BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (449 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040547|gb|ACT57343.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 449

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE
Sbjct: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS
Sbjct: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS
Sbjct: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD
Sbjct: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA
Sbjct: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV
Sbjct: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH
Sbjct: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           RLTGIREDMSLEEVINYASHRFSNNRPVL
Sbjct: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449


>gi|315122709|ref|YP_004063198.1| prolyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496111|gb|ADR52710.1| prolyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 453

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/442 (80%), Positives = 398/442 (90%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+RSKYFLP +QENP+DAEI SHK+MLRTGMI QHSKG+YSWLPLG KAL  VNAIIREE
Sbjct: 1   MKRSKYFLPAMQENPKDAEIISHKMMLRTGMISQHSKGMYSWLPLGNKALSKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+EMS PTLQSADLW+ESGRY+SYGKEMLR+ DRNDK+M+YGPT+EE+MTDIFRS
Sbjct: 61  QDRIGALEMSNPTLQSADLWIESGRYESYGKEMLRIVDRNDKSMLYGPTNEEMMTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+KSYR+LP   YQ+QLKFRDELRPRFG MRSREFLMKDAYSFDLT E S HSYNKMFVS
Sbjct: 121 HVKSYRDLPLILYQMQLKFRDELRPRFGTMRSREFLMKDAYSFDLTFEDSVHSYNKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIFHRLGLKSIPMRAESGPIGG LSHEFIVL++TGETQ+FCSKDFM+FPIPSENTDFD
Sbjct: 181 YLRIFHRLGLKSIPMRAESGPIGGSLSHEFIVLSNTGETQLFCSKDFMNFPIPSENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DI+SL  IV QWT PYAATSDVHNEKLF SL E  R+ ARGIEVGHIF+FGTKYS PMSA
Sbjct: 241 DIVSLKDIVRQWTTPYAATSDVHNEKLFHSLSEEDRIVARGIEVGHIFHFGTKYSHPMSA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF+GADGK HYVQMGSYGIG MRVVAA+IESSHD +GIIWPDSV+PF ISLIN+K HDQ 
Sbjct: 301 TFQGADGKKHYVQMGSYGIGPMRVVAAIIESSHDAQGIIWPDSVSPFHISLINLKIHDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A +KIY +LS+ GCDVF DD+ EQ GS+FA+ADLLGFPLQ+I+GSKF+SDSKVEIK+
Sbjct: 361 CCSASDKIYTQLSQAGCDVFLDDVDEQAGSKFALADLLGFPLQIIIGSKFISDSKVEIKN 420

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R TG +E MSLEEV+NYAS+RF
Sbjct: 421 RSTGTKEYMSLEEVVNYASNRF 442


>gi|327194827|gb|EGE61661.1| prolyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 440

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 288/436 (66%), Positives = 364/436 (83%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRINDRQERPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+DF IP E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVDFDIPGESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTIEAAIN 436


>gi|190891305|ref|YP_001977847.1| prolyl-tRNA synthetase [Rhizobium etli CIAT 652]
 gi|226701323|sp|B3PW17|SYP_RHIE6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|190696584|gb|ACE90669.1| prolyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 440

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 287/436 (65%), Positives = 363/436 (83%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQERPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+DF IP E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVDFDIPGESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIE GHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEAGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTIEAAIN 436


>gi|162329642|ref|YP_469149.2| prolyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|114152238|sp|Q2K9R4|SYP_RHIEC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 440

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 288/436 (66%), Positives = 360/436 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP ENTDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPGENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLKAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+K  DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKVGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALKKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTIEAAIN 436


>gi|241204106|ref|YP_002975202.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857996|gb|ACS55663.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 440

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 288/436 (66%), Positives = 361/436 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG LSHEFI+LADTGE++VFC KDF+DF IP  +TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGKLSHEFIILADTGESEVFCHKDFVDFDIPGAHTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTIEAAIN 436


>gi|218463078|ref|ZP_03503169.1| prolyl-tRNA synthetase [Rhizobium etli Kim 5]
          Length = 440

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 288/436 (66%), Positives = 361/436 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E TDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDERTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I E+WT+ YAATS++H+E  F+++PE+ R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 SVEGLQAIFEKWTSLYAATSEMHDEAAFNAVPESDRLSARGIEVGHIFYFGTKYSETMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTIEAAIN 436


>gi|116251485|ref|YP_767323.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|114152239|sp|Q1MIJ6|SYP_RHIL3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115256133|emb|CAK07214.1| putative prolyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 440

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 287/436 (65%), Positives = 361/436 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT E ++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREAAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG LSHEFI+LADTGE++VFC KDF+DF +P E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGKLSHEFIILADTGESEVFCHKDFVDFDVPGEHTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA LSK G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALSKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTIEAAIN 436


>gi|222085595|ref|YP_002544125.1| prolyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723043|gb|ACM26199.1| prolyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 475

 Score =  635 bits (1637), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 286/436 (65%), Positives = 362/436 (83%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VN IIREE
Sbjct: 36  MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNKIIREE 95

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 96  QNRSGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 155

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG+  +YNKMF +
Sbjct: 156 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTQEGAVIAYNKMFAA 215

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF++F IPSE+T+FD
Sbjct: 216 YLRTFDRLGLRAIPMRADTGPIGGELSHEFIILADTGESEVFCHKDFVNFDIPSEDTNFD 275

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  I ++WT+ YAATS++H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 276 DVAGLKGIFDKWTSLYAATSEMHDEATFNAIPEGERLSARGIEVGHIFYFGTKYSEPMGA 335

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+K+ DQ 
Sbjct: 336 KVQGPDGKEHAVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVVINMKSGDQA 395

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE IYA LSK G DV +DD  ++ G++FA ADL+G P+Q+IVG + ++  +VE+K 
Sbjct: 396 CDAACETIYAALSKAGKDVLFDDRDDRAGTKFATADLIGVPVQIIVGPRSIAGGEVEVKD 455

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 456 RKTGARETMTVEAAIN 471


>gi|209548882|ref|YP_002280799.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226701324|sp|B5ZYN2|SYP_RHILW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|209534638|gb|ACI54573.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 440

 Score =  635 bits (1637), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 286/436 (65%), Positives = 359/436 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP + TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDDRTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 SVDGLKAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPFQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTIEAAIN 436


>gi|150396141|ref|YP_001326608.1| prolyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166980159|sp|A6U7Z3|SYP_SINMW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150027656|gb|ABR59773.1| prolyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 442

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 280/436 (64%), Positives = 355/436 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLRTGMI Q S GIY+WLPLG++ LD VNA+IREE
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRTGMIRQQSAGIYTWLPLGKRVLDKVNAVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+Y +MF +
Sbjct: 121 YVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDRAGAEHAYKRMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E+T+FD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFLGFDIPGEDTNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ S+N+I E+WT+ YAATS++H E  FD++PE +R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 DVASMNAIFEKWTSRYAATSEMHEEAAFDAIPEGERLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP  +APF I +IN+K  D  
Sbjct: 301 KVLGPDGKEHTVHMGSYGIGPTRLVPAIIEASHDDNGIIWPKGIAPFDIVVINMKTGDDA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC ++Y+ L K G DV  DD  E+ G +FA AD++G P+QVIVG + +++ +VE+K 
Sbjct: 361 CDTACGRLYSDLGKAGFDVLLDDTDERAGGKFATADIIGVPVQVIVGPRSIANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTVEAAIN 436


>gi|15965039|ref|NP_385392.1| prolyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|307301111|ref|ZP_07580880.1| prolyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|307317844|ref|ZP_07597282.1| prolyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|81854328|sp|Q92QN2|SYP_RHIME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15074218|emb|CAC45865.1| Probable prolyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|306896606|gb|EFN27354.1| prolyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306904066|gb|EFN34652.1| prolyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 442

 Score =  621 bits (1601), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 278/436 (63%), Positives = 354/436 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLRTGM+ Q S GIY+WLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRTGMVRQQSAGIYTWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMF +
Sbjct: 121 YVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDRAGAEHAYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E+T+FD
Sbjct: 181 YLRTFDRMGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFLGFDIPGEDTNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I ++WT+ YAATS++H+E  F ++ E +R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 DVAGLKTIFDKWTSRYAATSEMHDEAAFGAIAEGERLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP  +APF + +IN+K  D+ 
Sbjct: 301 KVLGPDGKEHTVHMGSYGIGPTRLVPAIIEASHDDNGIIWPKGIAPFDVVVINMKTGDEA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC K+Y+ L K G DV  DD  E+ G +FA ADL+G P+QVIVG + +++ +VE+K 
Sbjct: 361 CDAACGKVYSDLGKAGFDVLLDDTDERAGGKFATADLIGVPVQVIVGPRSIANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 421 RKTGARETMTVEAAIN 436


>gi|227821637|ref|YP_002825607.1| prolyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227340636|gb|ACP24854.1| prolyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 501

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 279/436 (63%), Positives = 354/436 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLRTGMI Q S GIYSWLPLG++ LD VNAIIREE
Sbjct: 60  MRLSRYFMPILKENPKEAEIVSHRLMLRTGMIRQQSAGIYSWLPLGKRVLDKVNAIIREE 119

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GA+E+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 120 QNRSGAVELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 179

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL  EG++H+YNKMF +
Sbjct: 180 SVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDREGAEHAYNKMFAA 239

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGG+LSHEFI+LADTGE++V+C KDF+ F IP ++T+FD
Sbjct: 240 YLRTFDRMGLRAIPMRADTGPIGGNLSHEFIILADTGESEVYCHKDFLGFDIPGKDTNFD 299

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I ++WT+ YAATS++H+E  FD++ E ++VSARGIEVGHIFYFGTKYS  M A
Sbjct: 300 DVAGLKAIFDKWTSRYAATSEMHDEAAFDAISEGEKVSARGIEVGHIFYFGTKYSEAMGA 359

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF   +IN+K  D  
Sbjct: 360 KVLGPDGKEHIVHMGSYGIGPTRLVPAIIEASHDENGIIWPKSVAPFDAVVINMKTGDAA 419

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC  +Y+ L K G DV  DD  ++ G++FA ADL+G P+Q+IVG + +++ +VE+K 
Sbjct: 420 CDAACGTLYSDLGKAGFDVLLDDTDDRAGAKFATADLIGVPVQIIVGPRSIANGEVEVKD 479

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 480 RKTGERETMTVEAAIN 495


>gi|222148295|ref|YP_002549252.1| prolyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735283|gb|ACM36246.1| prolyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 498

 Score =  617 bits (1592), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 281/436 (64%), Positives = 355/436 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLRTGMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 59  MRLSRYFLPILKENPKEAEIVSHRLMLRTGMIRQQSQGIYSWLPLGKRVLDKVNAIIRQE 118

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQSA+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 119 QNRAGAVELLMPTLQSAELWQESGRYDDYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 178

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMF +
Sbjct: 179 YVKSYKSLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLTKESAIHSYNKMFAA 238

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IPS +TDFD
Sbjct: 239 YLRTFDRLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPSADTDFD 298

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I + WT+ YAATS++H+E  + ++P++ ++SARGIEVGHIFYFGTKYS PM A
Sbjct: 299 DVAGLQAIFDDWTSHYAATSEMHDEAAYGAMPDDAKISARGIEVGHIFYFGTKYSEPMGA 358

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF   +IN+KA D  
Sbjct: 359 KVQGPDGKEHLVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDAIIINMKAGDAG 418

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC+ +Y  L+K G DV  DD  ++ G++FA+ADL+G P QVIVG + V++ +VE+K+
Sbjct: 419 CDGACDTVYGALTKAGKDVLLDDTDDRAGAKFALADLIGVPYQVIVGPRSVANGEVELKN 478

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE M++E  IN
Sbjct: 479 RKTGERETMTIEAAIN 494


>gi|159184694|ref|NP_354297.2| prolyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|81848693|sp|Q8UFV9|SYP_AGRT5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159139984|gb|AAK87082.2| prolyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 440

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 284/438 (64%), Positives = 358/438 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q S GIYSWLPLG++ LD VN IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGKRVLDKVNKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ+A+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELLMPTLQTAELWQESGRYDDYGKEMLRIKDRQDRQMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMFV+
Sbjct: 121 YVKSYKNLPLNLYHIQLKFRDEVRPRFGTMRSREFLMKDAYSFDLTKEDAIHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IP+E+TDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPAESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  + ++WTA YAATS++H++  +D++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQGVFDEWTADYAATSEMHDDAAYDAIPEGERLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA D  
Sbjct: 301 KVQGKDGKEHPVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVIINMKAGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK+Y +LS  G DV +DD  ++ G +FA ADL+G P+Q+IVG + V++ +VE+K 
Sbjct: 361 CDAACEKLYYQLSNAGKDVLYDDTDDRAGQKFATADLIGVPVQIIVGPRSVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE +++E  +N A
Sbjct: 421 RKTGERETVTIEAAMNKA 438


>gi|325292651|ref|YP_004278515.1| Prolyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060504|gb|ADY64195.1| Prolyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 477

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 279/436 (63%), Positives = 357/436 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S GIYSWLPLG++ LD VN IIREE
Sbjct: 38  MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGKRVLDKVNRIIREE 97

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PTLQ+A+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 98  QDRSGAIELLMPTLQTAELWQESGRYDDYGKEMLRIKDRQDRQMLYGPTNEEMITDIFRS 157

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMFV+
Sbjct: 158 YVKSYKNLPLNLYHIQLKFRDEVRPRFGTMRSREFLMKDAYSFDLTKEDAIHSYNKMFVA 217

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IP+++T+FD
Sbjct: 218 YLRTFERLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPADDTNFD 277

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  + ++WTA YAATS++H+E  +D++P+ +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 278 DVAALQGVFDEWTADYAATSEMHDEAAYDAIPDGQRLSARGIEVGHIFYFGTKYSEPMGA 337

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +GADGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA D  
Sbjct: 338 KVQGADGKEHPVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVIINMKAGDAA 397

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK+Y  LS  G DV +DD  ++ G +FA ADL+G P+Q+IVG +  ++ +VE+K 
Sbjct: 398 CDAACEKLYYSLSNAGKDVLYDDTDDRAGQKFATADLIGVPMQIIVGPRSAANGEVEVKD 457

Query: 421 RLTGIREDMSLEEVIN 436
           R TG RE +++E  +N
Sbjct: 458 RKTGDRETVTIEAAMN 473


>gi|86281359|gb|ABC90422.1| prolyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 410

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 267/406 (65%), Positives = 333/406 (82%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI Q S+GIYSWLPLG++ LD VNAIIREEQNR GAIE+S+PTLQSA+LW ESGRYD+YG
Sbjct: 1   MIRQQSQGIYSWLPLGKRVLDKVNAIIREEQNRAGAIELSMPTLQSAELWQESGRYDAYG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEMLR+ DR D+ M+YGPT+EE++TDIFRS +KSY++LP   Y IQLKFRDE+RPRFG M
Sbjct: 61  KEMLRIKDRQDRPMLYGPTNEEMVTDIFRSSVKSYKDLPLNLYHIQLKFRDEIRPRFGTM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           RSREF+MKDAYSFDLT EG++HSYNKMF +YLR F RLGL++IPMRA++GPIGG+LSHEF
Sbjct: 121 RSREFMMKDAYSFDLTREGAEHSYNKMFAAYLRTFERLGLRAIPMRADTGPIGGNLSHEF 180

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+LADTGE++VFC KDF+ F IP ENTDFD +  L +I ++WT+ YAATS++H+E  F++
Sbjct: 181 IILADTGESEVFCHKDFVGFDIPGENTDFDSVEGLKAIFDKWTSLYAATSEMHDEAAFNA 240

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +PE  R+SARGIEVGHIFYFGTKYS PM A  +G DGK+H+V MGSYGIG  R+V A+IE
Sbjct: 241 VPEGDRLSARGIEVGHIFYFGTKYSEPMGAKVQGPDGKEHFVHMGSYGIGPTRLVPAIIE 300

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD  GIIWP SVAPF + +IN+K  DQ C D CE IYA L K G DV +DD  ++ G+
Sbjct: 301 ASHDDNGIIWPASVAPFDVVVINMKVGDQACDDTCELIYAALKKAGKDVLYDDTDDRAGT 360

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +FA ADL+G P+Q+I G + V++ +VE+K R TG RE M++E  IN
Sbjct: 361 KFATADLIGVPVQIIAGPRAVANGEVEVKDRKTGARETMTIEAAIN 406


>gi|110633394|ref|YP_673602.1| prolyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123162548|sp|Q11JI8|SYP_MESSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110284378|gb|ABG62437.1| prolyl-tRNA synthetase [Chelativorans sp. BNC1]
          Length = 442

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 261/434 (60%), Positives = 347/434 (79%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E PR+AEI SH+LMLR+GMI Q   G +SWLPLG++ LD V  I+REE
Sbjct: 1   MRVSRYFLPILKETPREAEIVSHRLMLRSGMIRQQGAGSFSWLPLGKRVLDKVCQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PT+QSADLW+ESGRY+ YGKEMLR+ DR D+AM+YGPT+EE++TDIFR+
Sbjct: 61  QDRAGAQEILMPTIQSADLWIESGRYNDYGKEMLRIRDRQDRAMLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +YN+MFV+
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKAAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA TGE++VFC+KDF+D P+P  + DF 
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDLSHEFIILASTGESEVFCNKDFLDLPVPPADVDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  +V +WT PYAAT ++H+E  +  +P  K+++ARGIEVGHIF+FGTKYS PM+A
Sbjct: 241 NDAEIGGVVSEWTTPYAATDEMHDEAAWAEVPAEKQLAARGIEVGHIFHFGTKYSKPMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++H+V MGSYGIG  R+ AA+IE+SHD  GIIWP+SVAPF ++LIN+K  D  
Sbjct: 301 KVTGPDGQEHFVSMGSYGIGPTRLTAAIIEASHDDGGIIWPESVAPFDVALINMKVGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA ++  G +V +DD  ++ G++FA ADL+G P QVIVG + ++  +VE+K+
Sbjct: 361 CDRVCEELYAGMTAAGREVLYDDTDQRAGAKFATADLIGLPWQVIVGPRGIAAGEVEVKN 420

Query: 421 RLTGIREDMSLEEV 434
           R TG RE++ +  V
Sbjct: 421 RATGERENLPISAV 434


>gi|260462251|ref|ZP_05810495.1| prolyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259032111|gb|EEW33378.1| prolyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 442

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 272/443 (61%), Positives = 343/443 (77%), Gaps = 4/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR D+ M+YGPT+EEV+T+I R+
Sbjct: 61  QNRAGALEILMPTIQSADLWRESGRYDDYGKEMLRIKDRQDRDMLYGPTNEEVVTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGAKAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QV+C +D++   +P ENTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVYCDRDYLSLQVPGENTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H++  +D L E  RVSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDGEIADIVKTWTTPYAATDEMHDQAAWDKLGEADRVSARGIEVGHIFHFGDKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+V  GSYGIG  R+VAA+IE+SHD  GIIWP++VAPF I +IN+K  D  
Sbjct: 301 KVTGPDGKDHFVSGGSYGIGPSRLVAAIIEASHDENGIIWPEAVAPFDIGVINMKVGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   C+++YA  +  G DV +DD  ++ G +FA ADL+G P QVIVG + V+  +VEIK+
Sbjct: 361 CDRVCDELYAAFADAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEVEIKN 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG RE + + E    A  RF 
Sbjct: 421 RKTGERETLPIAE----AKKRFG 439


>gi|163759522|ref|ZP_02166607.1| prolyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283119|gb|EDQ33405.1| prolyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 447

 Score =  585 bits (1507), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/441 (62%), Positives = 342/441 (77%), Gaps = 5/441 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+ENP+DAEI SH+LM R GMI Q S GIYSWLPLG++ LD V  I+REE
Sbjct: 1   MRLSKYFLPILKENPKDAEIVSHRLMARAGMIKQQSAGIYSWLPLGKRVLDKVCNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PT+Q ADLW ESGRYD YG+EMLR+ DRND+ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGAIEILMPTIQPADLWRESGRYDDYGQEMLRINDRNDREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  E SK +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDYEASKAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GLKSIPMRA++GPIGG LSHEFIVLA+TGE+QVFC +DF  F +P  + ++D
Sbjct: 181 YLRTFERCGLKSIPMRADTGPIGGSLSHEFIVLAETGESQVFCHRDFDGFAVPPVDMNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE-----KLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
           D  ++ ++VEQWT P+AAT ++ ++     + +D L E+ RVSARGIEVGHIF+FGTKYS
Sbjct: 241 DAAAVAAVVEQWTTPFAATDEIMDKEEWAREAWDGLGEDARVSARGIEVGHIFHFGTKYS 300

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            PM+A  +G DGK HYV MGSYGIG  R++ A+IE+SHD  GIIWP  VAPF + LIN+K
Sbjct: 301 EPMNAFVQGPDGKQHYVSMGSYGIGPSRLLGAIIEASHDENGIIWPKGVAPFDVGLINMK 360

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D  C  ACE+I   L   G ++ +DD  E+ G++FA ADL+G P+QVI G + V+D  
Sbjct: 361 PGDAACDAACERIETALENAGIELLYDDTDERAGAKFAKADLIGLPIQVIAGPRAVADGN 420

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           VEIK R TG RE +S++E IN
Sbjct: 421 VEIKVRATGERETLSIDEAIN 441


>gi|49474193|ref|YP_032235.1| prolyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|81827622|sp|Q6FZX5|SYP_BARQU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49239697|emb|CAF26072.1| Prolyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 441

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 267/436 (61%), Positives = 341/436 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIISHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKVCKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAVEILMPTVQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVHSYKDLPLNLYHIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGG+LSHEFI+LA+TGE+ +FC K F +  +P  + DF 
Sbjct: 181 YLRTFSCLGLKAIPMRADTGPIGGELSHEFIILAETGESAIFCDKKFFELTVPHSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L +IV+QWT+ YAAT ++HNE+ +  + +N R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLANIVKQWTSFYAATEEMHNEEEWAKVSDNDRLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAAVIE+SHD  GIIWP S+APF   +IN+K +D+ 
Sbjct: 301 KVMGQDGKEHLVSMGSYGIGPSRLVAAVIEASHDENGIIWPKSIAPFDFGIINMKPNDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y+ L + G D   DD  E+ GS+FA  DL+G P Q+IVG K ++ ++VEIK 
Sbjct: 361 CTRACETLYSGLMQAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPKSIAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG+++ +++E V+N
Sbjct: 421 RKTGVKKSLTVENVLN 436


>gi|13471387|ref|NP_102953.1| prolyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|81855688|sp|Q98KS5|SYP_RHILO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14022129|dbj|BAB48739.1| proline-tRNA ligase [Mesorhizobium loti MAFF303099]
          Length = 442

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 268/443 (60%), Positives = 342/443 (77%), Gaps = 4/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRY+ YGKEMLR+ DR D+ M+YGPT+EE++T+IFR+
Sbjct: 61  QNRAGALEILMPTIQSADLWRESGRYNDYGKEMLRIKDRQDRDMLYGPTNEEMVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG++ +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGARSAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QVFC +D++   +P  NTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVFCHRDYLSLAVPGANTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H+E  ++ +PE+ +VSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDGEIADIVKTWTTPYAATDEMHDEAAWEKVPESDKVSARGIEVGHIFHFGEKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+   GSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF I LIN+K  D  
Sbjct: 301 KVTGPDGKDHFASGGSYGIGPSRLVAAIIEASHDENGIIWPDAVAPFDIGLINMKVGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E++ A  +  G DV +DD  ++ G +FA ADL+G P QVIVG + V+  +VEIK+
Sbjct: 361 CDRVSEELNAAFTAAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEVEIKN 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG RE + + +    A  RF 
Sbjct: 421 RRTGERETLPIAD----AKKRFG 439


>gi|240850599|ref|YP_002971999.1| prolyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267722|gb|ACS51310.1| prolyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 441

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 265/439 (60%), Positives = 343/439 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIVSHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKVCRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRA++GPIGG+LSHEFI+LA+TGE+ +FC+K F++  +P  + DF 
Sbjct: 181 YLRTFSRLGLKAIPMRADTGPIGGELSHEFIILAETGESAIFCNKQFLELTVPDSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L+ IV+QWT+ YAAT ++HNE+ +  + ++ R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLDDIVKQWTSFYAATEEMHNEEEWAKVSDHNRLSARGIEVGHIFHFGTKYSAPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP S+APF   +IN+K+ D+ 
Sbjct: 301 KVMGQDGKEHVVSMGSYGIGPSRLVAAAIEASHDENGIIWPKSMAPFDFGIINMKSDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L + G D   DD  E+ GS+FA  DL+G P Q+IVG   ++ ++VEIK 
Sbjct: 361 CTKACEFLYQGLKEAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPNSIAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+++ + +E+V++  S
Sbjct: 421 RKTGVKKSLKVEDVLSQLS 439


>gi|154248383|ref|YP_001419341.1| prolyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|226701431|sp|A7INT8|SYP_XANP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154162468|gb|ABS69684.1| prolyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 440

 Score =  578 bits (1489), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 262/427 (61%), Positives = 337/427 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLP G + L+ V  IIREE
Sbjct: 1   MRLSRYFLPILREVPKEAEIVSHRLMLRAGMIRQESAGIYAWLPFGLRVLNKVCNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIEM +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R+
Sbjct: 61  QNRSGAIEMLMPTIQSADLWRESGRYDDYGKEMLRIKDRHEREMLFGPTNEEMITEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y IQ KFRDE+RPRFGV RSREFLMKDAYSFDL   G++HSYNKMFV+
Sbjct: 121 YVKSYKALPLNLYHIQWKFRDEVRPRFGVYRSREFLMKDAYSFDLDAAGARHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGG+LSHEFI+LA TGE++VFC  D+++   PS + +FD
Sbjct: 181 YLRTFARMGLKAIPMVADTGPIGGNLSHEFIILASTGESEVFCHGDYLEMAPPSADVNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L S+ ++WT  YAATS+ H+E  F ++PE  R++ARGIEVGHIFYFGTKYS P  A
Sbjct: 241 DAAGLQSVFDRWTELYAATSEKHDEAAFAAIPEASRMAARGIEVGHIFYFGTKYSEPFGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              GADG +H + MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF++ ++N+KA D  
Sbjct: 301 KVLGADGAEHTIHMGSYGIGPSRLVAAMIEASHDDNGIIWPDAVAPFQVGILNLKAGDST 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEK+YA L+  G DV +DD  E+ G++FA ADL+G P Q++VG K ++D KVE+K 
Sbjct: 361 TGAACEKLYAELTAAGYDVLYDDTEERAGAKFATADLIGLPWQILVGPKGLADGKVELKR 420

Query: 421 RLTGIRE 427
           R+ G RE
Sbjct: 421 RVDGSRE 427


>gi|323139097|ref|ZP_08074155.1| prolyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322395661|gb|EFX98204.1| prolyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 447

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 263/435 (60%), Positives = 338/435 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR G+I Q S GIY+WLPLG K L+N+  IIREE
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGLIRQESAGIYAWLPLGLKVLNNITRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE  +PT+QSADLW ESGRYD+YGKEMLR+ DR+D+ M++GPT+EE++T+IFR+
Sbjct: 61  QNRAGAIECLMPTIQSADLWRESGRYDAYGKEMLRITDRHDREMLFGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDLT E  +HSYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLTAEAGRHSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM AESGPIGG+LSHEFI+LA+TGE++VFC KDF+ F  P  N DFD
Sbjct: 181 YLRTFARMGLTAIPMAAESGPIGGNLSHEFIILAETGESEVFCHKDFLSFAPPPANVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L  IV +WT+ YAATS++H+   ++++PE  RVSARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DAPALEEIVGKWTSRYAATSEMHDAAAYEAVPEASRVSARGIEVGHIFYFGTKYSEPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+  VQMGSYGIG  R+VAA+IE+ HD  GI+WP+ VAPF + + ++K  D  
Sbjct: 301 VVNGPDGKEVVVQMGSYGIGPSRLVAAIIEAGHDEAGIVWPEQVAPFHVGVADLKVGDAN 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C  +  +L   G DV  DD  E+ G++FA  DL+G P Q++VG K +++ +VE+K 
Sbjct: 361 TGRVCGDLVQQLENAGLDVLHDDRDERPGAKFATLDLIGLPWQILVGPKGLAEGRVEVKR 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG RE +S E+V+
Sbjct: 421 RRTGERELLSPEDVV 435


>gi|163868357|ref|YP_001609566.1| prolyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|189083488|sp|A9IUL1|SYP_BART1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161018013|emb|CAK01571.1| Prolyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 441

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 267/439 (60%), Positives = 338/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+ MLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIVSHRFMLRAGMIRQQTSGIYSWLPLGKKVLDKVCKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRA++GPIGG LSHEFI+LA+TGE+ +FC K F++  +P+ + DF 
Sbjct: 181 YLRTFSRLGLKAIPMRADTGPIGGKLSHEFIILAETGESAIFCDKQFLELSVPNSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L+  V+QWT+ YAAT ++HNE+ +  L E  R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLDDTVKQWTSFYAATEEMHNEEEWARLSEENRLSARGIEVGHIFHFGTKYSAPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD KGIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHVVSMGSYGIGPSRLVAAAIEASHDEKGIIWPKSMAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L   G D F DD  E+ GS+FA  DL+G P Q+IVG   ++ ++VEIK 
Sbjct: 361 CTQACEFLYQGLKDAGFDPFLDDRNERPGSKFATMDLIGLPTQIIVGPNSIAHNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG ++ + +E+V++  S
Sbjct: 421 RKTGAKKSLKVEDVLSQLS 439


>gi|319783000|ref|YP_004142476.1| prolyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168888|gb|ADV12426.1| prolyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 442

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 266/443 (60%), Positives = 343/443 (77%), Gaps = 4/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR D+ M+YGPT+EEV+T+I R+
Sbjct: 61  QDRAGALEILMPTIQSADLWRESGRYDDYGKEMLRIKDRQDRDMLYGPTNEEVVTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG++ +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGARAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QV+C +D++   +P  NTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVYCHRDYLALDVPGANTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H+E  ++ + E+ +VSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDAEIADIVKTWTTPYAATDEMHDEAAWEKIGESDKVSARGIEVGHIFHFGDKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+V  GSYGIG  R+VAA+IE+SHD  GIIWP++VAPF I LIN+KA D  
Sbjct: 301 KVTGPDGKDHFVSGGSYGIGPSRLVAAIIEASHDDNGIIWPEAVAPFDIGLINMKAGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   C++++A     G DV +DD  ++ G +FA ADL+G P QVIVG + V+  ++EIK+
Sbjct: 361 CDGVCDELHAAFVAAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEIEIKN 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG RE + + +    A  RF 
Sbjct: 421 RKTGERETLPIAD----AKKRFG 439


>gi|49475642|ref|YP_033683.1| prolyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|81827712|sp|Q6G3A4|SYP_BARHE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49238449|emb|CAF27677.1| Prolyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 441

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/439 (61%), Positives = 339/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIISHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ES RYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESDRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YIRSYKDLPLNLYHIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYEGSKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGG LSHEFI+LA+TGE+ +FC K F++  +P  + DF 
Sbjct: 181 YLRTFSCLGLKAIPMRADTGPIGGKLSHEFIILAETGESAIFCDKHFLELTVPDSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L +IV+QWT+ YAAT ++H+E+ +  + +N R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAILANIVKQWTSFYAATEEMHDEEEWAKISDNNRLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAAVIE+SHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHLVSMGSYGIGPSRLVAAVIEASHDENGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L   G D   DD  E+ GS+FA  DL+G P Q+IVG K V+ ++VEIK 
Sbjct: 361 CTHACETLYKGLRYAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPKSVAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TGI++ +++E V+N  S
Sbjct: 421 RKTGIKKSLTVENVLNQFS 439


>gi|170742529|ref|YP_001771184.1| prolyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|226701312|sp|B0ULM2|SYP_METS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168196803|gb|ACA18750.1| prolyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 444

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 257/430 (59%), Positives = 341/430 (79%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNRVVEVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PT+QSA+LW ESGRY++YGKEMLR+ DR+++ M++GPT+EE++T IFRS
Sbjct: 61  QDRSGAIELLMPTIQSAELWRESGRYEAYGKEMLRIRDRHEREMLFGPTNEEMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP + Y IQ KFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMFV+
Sbjct: 121 AVRSYKDLPKSLYHIQWKFRDEVRPRFGTMRSREFLMKDAYSFDLDEAGARHAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRAE+GPIGG+LSHEFI+LA TGE++V+C + ++DFPIP  +TDFD
Sbjct: 181 YLRTFARLGLKAIPMRAETGPIGGNLSHEFIILAQTGESEVYCDRAYLDFPIPPGSTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L + V+ WT+ YAATS++H  + F ++PE  R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQATVDHWTSRYAATSEMHEPERFAAVPEEARMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA+IE+SHD  GI+WPD+VAPF + L+N+K  D  
Sbjct: 301 RVTGPDGQERPVHMGSYGIGPSRLVAAIIEASHDEAGIVWPDAVAPFDVGLLNLKTGDIA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC +I  +L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ +VE+K 
Sbjct: 361 TDAACARIQEQLEAAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGQVELKR 420

Query: 421 RLTGIREDMS 430
           R TG RE ++
Sbjct: 421 RATGERETVA 430


>gi|220924023|ref|YP_002499325.1| prolyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|254782908|sp|B8IUW4|SYP_METNO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219948630|gb|ACL59022.1| prolyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 443

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 257/434 (59%), Positives = 339/434 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNRVTEVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PT+QSA+LW ESGRY++YGKEMLR+ DR+++ M++GPT+EE++T IFRS
Sbjct: 61  QDRSGAIELLMPTIQSAELWRESGRYEAYGKEMLRIRDRHEREMLFGPTNEEMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   Y IQ KFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMFV+
Sbjct: 121 AVRSYKDLPKNLYHIQWKFRDEVRPRFGTMRSREFLMKDAYSFDLDEAGARHAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRAE+GPIGG+LSHEFI+LA TGE++VFC + ++ FPIP  + DFD
Sbjct: 181 YLRTFARLGLKAIPMRAETGPIGGNLSHEFIILAQTGESEVFCDRAYLGFPIPPASIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L + V+ WT+ YAATS++H    F+++PE  R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQATVDHWTSRYAATSEMHEPAAFEAVPEEARMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA+IE+SHD  GI+WPDSVAPF ++L+N+K  D  
Sbjct: 301 RVTGPDGQERPVHMGSYGIGPSRLVAAIIEASHDEAGIVWPDSVAPFDVALLNLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC K+   L   G  V  DD  E+ G++FA ADL+G P QVIVG K +++  +E+K 
Sbjct: 361 TDAACAKLQEELEAAGLTVLTDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGTIELKR 420

Query: 421 RLTGIREDMSLEEV 434
           R TG RE ++++ V
Sbjct: 421 RATGEREIVAVDAV 434


>gi|254713929|ref|ZP_05175740.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254717013|ref|ZP_05178824.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261218820|ref|ZP_05933101.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261321681|ref|ZP_05960878.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|260923909|gb|EEX90477.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294371|gb|EEX97867.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
          Length = 442

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 262/436 (60%), Positives = 337/436 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V AIIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|319407251|emb|CBI80890.1| Prolyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 441

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 264/443 (59%), Positives = 343/443 (77%), Gaps = 4/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E+P++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKESPKEAEVISHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEILMPTIQSADLWRESERYNDYGLEMLRIRDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+LA TGE+ +FC K F++F +PS + DF 
Sbjct: 181 YLRTFSRIGLKAIPMRADTGPIGGELSHEFIILAKTGESSIFCDKRFLEFTVPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  +P++ ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADIVRQWTSLYAATEEMHNEEEWSKVPDSNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H+V MGSYGIG  R+VAAVIESSHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHFVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD GE+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYICETLYQELIRRGFDPLLDDTGERPGSKFATMDLIGLPVQMIIGPKNATQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG+RE +++E V+N    RFS
Sbjct: 421 RKTGLREVLTVEAVLN----RFS 439


>gi|163850499|ref|YP_001638542.1| prolyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|226701309|sp|A9W1L5|SYP_METEP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163662104|gb|ABY29471.1| prolyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 441

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 255/429 (59%), Positives = 332/429 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 121 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDM 429
           R +G RE +
Sbjct: 421 RASGERETL 429


>gi|240137564|ref|YP_002962035.1| proline-tRNA ligase [Methylobacterium extorquens AM1]
 gi|240007532|gb|ACS38758.1| proline-tRNA ligase [Methylobacterium extorquens AM1]
          Length = 442

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 255/429 (59%), Positives = 332/429 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 2   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 62  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 122 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 182 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 242 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 301

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 302 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 361

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 362 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 421

Query: 421 RLTGIREDM 429
           R +G RE +
Sbjct: 422 RASGERETL 430


>gi|225627317|ref|ZP_03785354.1| prolyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617322|gb|EEH14367.1| prolyl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 445

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/436 (59%), Positives = 336/436 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 424 RKTGERQSLGIEAAIN 439


>gi|254560035|ref|YP_003067130.1| proline-tRNA ligase [Methylobacterium extorquens DM4]
 gi|254267313|emb|CAX23145.1| proline-tRNA ligase [Methylobacterium extorquens DM4]
          Length = 442

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 255/429 (59%), Positives = 332/429 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 2   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 62  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 122 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 182 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 242 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 301

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 302 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 361

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 362 CDAACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 421

Query: 421 RLTGIREDM 429
           R +G RE +
Sbjct: 422 RASGERETL 430


>gi|153009733|ref|YP_001370948.1| prolyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|166980136|sp|A6X1L5|SYP_OCHA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151561621|gb|ABS15119.1| prolyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 442

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 264/436 (60%), Positives = 336/436 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQERDMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QVFC K ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVFCDKAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVNRWTTPYAATDEMHDEADWSKVKPEDQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+ HD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEAFHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EKIY  L+  G D   DD  ++ G++FA  DL+G P QVIVG + V+  +VEIK 
Sbjct: 361 CDAVSEKIYEALTNAGVDPLLDDTDDRPGAKFATMDLIGLPTQVIVGPRGVAAGEVEIKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ +S+E  IN
Sbjct: 421 RKTGERQSLSVEAAIN 436


>gi|218529196|ref|YP_002420012.1| prolyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|254782907|sp|B7KPK1|SYP_METC4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218521499|gb|ACK82084.1| prolyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 441

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 255/429 (59%), Positives = 332/429 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 1   MRLSRYFLPILRETPKEAEIISHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 121 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDM 429
           R +G RE +
Sbjct: 421 RASGERETL 429


>gi|163843095|ref|YP_001627499.1| prolyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254706964|ref|ZP_05168792.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254709928|ref|ZP_05171739.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|256031421|ref|ZP_05445035.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256159542|ref|ZP_05457310.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256254829|ref|ZP_05460365.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|260168555|ref|ZP_05755366.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261222010|ref|ZP_05936291.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261314427|ref|ZP_05953624.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261317474|ref|ZP_05956671.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261758028|ref|ZP_06001737.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988510|ref|ZP_06101067.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|265997974|ref|ZP_06110531.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|189083490|sp|B0CLE9|SYP_BRUSI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163673818|gb|ABY37929.1| prolyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|260920594|gb|EEX87247.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261296697|gb|EEY00194.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261303453|gb|EEY06950.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261738012|gb|EEY26008.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|262552442|gb|EEZ08432.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|264660707|gb|EEZ30968.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 442

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/436 (59%), Positives = 336/436 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|254718929|ref|ZP_05180740.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265983916|ref|ZP_06096651.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838840|ref|ZP_07471671.1| prolyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662508|gb|EEZ32769.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406124|gb|EFM62372.1| prolyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 442

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/436 (59%), Positives = 336/436 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|90417824|ref|ZP_01225736.1| prolyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337496|gb|EAS51147.1| prolyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 440

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/435 (59%), Positives = 335/435 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + G+YS+LPLG++ LD V AIIREE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQAAGLYSFLPLGKRVLDKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PT+QSADLW ESGRY+ YGKEMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTIQSADLWRESGRYEDYGKEMLRIEDRHGRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++++Y++LP   Y +Q KFRDE+RPRFGVMRSREFLMKDAYSFDL  + SK +Y++MFV+
Sbjct: 121 YVRTYKDLPLNLYHLQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYDNSKIAYDRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GLK+IPMRA++GPIGG+LSHEFIVLA TGE++VFC +D++D  +P E  DFD
Sbjct: 181 YLRTFERCGLKAIPMRADTGPIGGELSHEFIVLASTGESEVFCHRDYLDLAVPCEGVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV+ WT PYAAT ++H    +D L E+ +++ARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DAAGLAEIVKAWTTPYAATDEMHETATWDQLAEDDKLAARGIEVGHIFHFGTKYSEPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYGIG  R++AA+IE+SHD  GIIWP SVAPF + LIN+K  D  
Sbjct: 301 VVTGPDGKDVPVHMGSYGIGPSRLLAAIIEASHDENGIIWPKSVAPFDVGLINMKPGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y ++   G DV +DD   + G++FA  DL+G P+QVIVG +     + EIK 
Sbjct: 361 CDAACEDLYRQMQAAGIDVLYDDQDTRAGAKFASMDLIGLPMQVIVGPRGAKAGEAEIKL 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG R+ + L  V+
Sbjct: 421 RATGERQSLPLSSVL 435


>gi|239831704|ref|ZP_04680033.1| prolyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239823971|gb|EEQ95539.1| prolyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 446

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 262/436 (60%), Positives = 338/436 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIY+WLP+G K L+ V  IIREE
Sbjct: 5   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYAWLPIGLKVLNKVCDIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 65  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQERDMLFGPTNEEMVTDIFRS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 125 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QVFC K ++D  +P  +TDF 
Sbjct: 185 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVFCDKAYLDLAVPGADTDFR 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV++WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 245 NDAQLTDIVQRWTTPYAATDEMHDEADWAKVKPEDQVSARGIEVGHIFHFGTKYSEPMGA 304

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+ HD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 305 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEAFHDDAGIIWPKAIAPFGAGIVNMKPGDEG 364

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  ++ G++FA  DL+G P QVIVG + V+  +VEIK 
Sbjct: 365 CDAVSEKLYEALTNAGVDPLLDDTDDRPGAKFATMDLIGLPTQVIVGPRGVAAGEVEIKD 424

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+++S+E  IN
Sbjct: 425 RKTGERQNLSVEAAIN 440


>gi|254689076|ref|ZP_05152330.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693559|ref|ZP_05155387.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|256257325|ref|ZP_05462861.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260754574|ref|ZP_05866922.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|260883601|ref|ZP_05895215.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|261213824|ref|ZP_05928105.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|297248174|ref|ZP_06931892.1| prolyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|260674682|gb|EEX61503.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|260873129|gb|EEX80198.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260915431|gb|EEX82292.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|297175343|gb|EFH34690.1| prolyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 442

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/436 (59%), Positives = 335/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|256060932|ref|ZP_05451090.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261324932|ref|ZP_05964129.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261300912|gb|EEY04409.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
          Length = 442

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/436 (59%), Positives = 335/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAGTGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKLGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|114707388|ref|ZP_01440285.1| prolyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537269|gb|EAU40396.1| prolyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 440

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/435 (60%), Positives = 336/435 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E PR+AEI SH+LMLR GMI Q + G+Y++LPLG K L+ V AIIREE
Sbjct: 1   MRLSRYFLPILKETPREAEIVSHQLMLRAGMIRQQAAGLYTFLPLGLKVLNKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YG+EMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QNRAGANELLMPTIQSADLWRESGRYDAYGEEMLRITDRHKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E ++ +Y++MFVS
Sbjct: 121 YVRSYRSLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDFESAQTAYHRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GL++IPMRA++GPIGG+LSHEFI+LA TGE++VFC +D++   IPSE  DFD
Sbjct: 181 YLRTFDRCGLQAIPMRADTGPIGGNLSHEFIILASTGESEVFCHRDYLGMEIPSEAIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L SIVE+WT PYAAT ++H+E  ++++P N +++ARGIEVGHIFYFGTKYS  M+A
Sbjct: 241 DAGQLASIVEKWTTPYAATDEMHDETAWNTVPANHQLNARGIEVGHIFYFGTKYSAAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYGIG  R+VAA IE+ HD  GIIWP S+APF + LIN+K  D  
Sbjct: 301 AVTGPDGKDVPVHMGSYGIGPSRLVAAAIEAFHDEAGIIWPRSIAPFDVGLINMKPGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEKIY  + + G DV +DD   + G +FA  DL+G P QVI+G +     + E+K 
Sbjct: 361 CDAACEKIYEEMKQAGIDVLYDDQEGRAGGKFATMDLIGLPTQVIIGPRGAKSGEAEVKD 420

Query: 421 RLTGIREDMSLEEVI 435
           R +G RE + +++VI
Sbjct: 421 RASGARETIPMDQVI 435


>gi|254701588|ref|ZP_05163416.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261752141|ref|ZP_05995850.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261741894|gb|EEY29820.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 442

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/436 (59%), Positives = 335/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKFYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|237815257|ref|ZP_04594255.1| prolyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790094|gb|EEP64304.1| prolyl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 445

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/436 (59%), Positives = 335/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + ++  IN
Sbjct: 424 RKTGERQSLGIKAAIN 439


>gi|148560203|ref|YP_001258799.1| prolyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|166980104|sp|A5VQ02|SYP_BRUO2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148371460|gb|ABQ61439.1| prolyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 442

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/436 (59%), Positives = 336/436 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVFMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLDIEAAIN 436


>gi|306843758|ref|ZP_07476357.1| prolyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275949|gb|EFM57662.1| prolyl-tRNA synthetase [Brucella sp. BO1]
          Length = 442

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 259/436 (59%), Positives = 336/436 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + +++  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLNLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|161618786|ref|YP_001592673.1| prolyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|254704135|ref|ZP_05165963.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|260566616|ref|ZP_05837086.1| prolyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261754801|ref|ZP_05998510.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|189083489|sp|A9MAJ9|SYP_BRUC2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161335597|gb|ABX61902.1| prolyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|260156134|gb|EEW91214.1| prolyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261744554|gb|EEY32480.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
          Length = 442

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/436 (59%), Positives = 335/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R  G R+ + +E  IN
Sbjct: 421 RKMGERQSLGIEAAIN 436


>gi|328543706|ref|YP_004303815.1| Prolyl-tRNA synthetase [polymorphum gilvum SL003B-26A1]
 gi|326413449|gb|ADZ70512.1| Prolyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 442

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 255/436 (58%), Positives = 333/436 (76%), Gaps = 2/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGFRVLRKIEKIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M+YGPT+EE++T+IFRS
Sbjct: 61  QARAGAVQLLMPTIQPADLWRESGRYDAYGKEMLRITDRHEREMLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFD+  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDIDKEAARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGD+SHEFI+LA TGE+ VFC +  +D P P E+TDF 
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDMSHEFIILASTGESAVFCDRSLLDLPTPGEDTDF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L+ IVE WT PYAAT ++H+E  F +LPE +RVSARGIEVGHIFYFGTKYS PM A
Sbjct: 240 -LSDLSPIVEAWTTPYAATDEMHDETTFAALPEAERVSARGIEVGHIFYFGTKYSEPMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GIIWP SVAPF + LIN+K  D  
Sbjct: 299 RVMTAEGTEVPVHMGSYGVGVSRLLGALIEANHDDDGIIWPASVAPFHVGLINLKPGDAD 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YARL  VG +V +DD+  + G++FA  DL+G P Q+I G + + D  VE+K 
Sbjct: 359 TDSACAGLYARLEAVGVEVLYDDVDTRAGAKFATMDLIGLPFQIIAGPRGLKDGVVEVKE 418

Query: 421 RLTGIREDMSLEEVIN 436
           R +G RE +SLE   N
Sbjct: 419 RASGQRESLSLEAAFN 434


>gi|62289771|ref|YP_221564.1| prolyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699699|ref|YP_414273.1| prolyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024014|ref|YP_001934782.1| prolyl-tRNA synthetase [Brucella abortus S19]
 gi|254697210|ref|ZP_05159038.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260545481|ref|ZP_05821222.1| prolyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260761620|ref|ZP_05873963.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|81309431|sp|Q57DT1|SYP_BRUAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152174|sp|Q2YNE3|SYP_BRUA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699122|sp|B2S561|SYP_BRUA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|62195903|gb|AAX74203.1| ProS, prolyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82615800|emb|CAJ10798.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase,
           class IIa:Anticodon binding domain:Prolyl-tRNA
           synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189019586|gb|ACD72308.1| prolyl-tRNA synthetase [Brucella abortus S19]
 gi|260096888|gb|EEW80763.1| prolyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260672052|gb|EEX58873.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 442

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/436 (59%), Positives = 335/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + ++  IN
Sbjct: 421 RKTGERQSLGIKAAIN 436


>gi|17987423|ref|NP_540057.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|17983114|gb|AAL52321.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
          Length = 445

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/436 (59%), Positives = 334/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L   V +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDTVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATIDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 424 RKTGERQSLGIEAAIN 439


>gi|225852336|ref|YP_002732569.1| prolyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256044499|ref|ZP_05447403.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113355|ref|ZP_05454213.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|256264165|ref|ZP_05466697.1| prolyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563853|ref|ZP_05834339.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265990923|ref|ZP_06103480.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994761|ref|ZP_06107318.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|114152175|sp|Q8YGL8|SYP_BRUME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782889|sp|C0RIF7|SYP_BRUMB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225640701|gb|ACO00615.1| prolyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|260153869|gb|EEW88961.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|262765874|gb|EEZ11663.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|263001707|gb|EEZ14282.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094383|gb|EEZ18228.1| prolyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408844|gb|ADZ65909.1| prolyl-tRNA synthetase [Brucella melitensis M28]
 gi|326538559|gb|ADZ86774.1| prolyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 442

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 260/436 (59%), Positives = 334/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L   V +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDTVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATIDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|256369253|ref|YP_003106761.1| prolyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|255999413|gb|ACU47812.1| prolyl-tRNA synthetase [Brucella microti CCM 4915]
          Length = 442

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 260/436 (59%), Positives = 335/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEML + DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLCIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+ + +E  IN
Sbjct: 421 RKTGERQSLGIEAAIN 436


>gi|158423310|ref|YP_001524602.1| prolyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|172047938|sp|A8I438|SYP_AZOC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158330199|dbj|BAF87684.1| prolyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 440

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 255/434 (58%), Positives = 335/434 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++A+I SH+LMLR GMI Q S GIY+WLPLG + L+ +  IIREE
Sbjct: 1   MRLSRYFLPILREVPKEADIVSHRLMLRAGMIRQESAGIYAWLPLGLRVLNKICNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNRTGA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R 
Sbjct: 61  QNRTGAVELLMPTIQSADLWRESGRYDDYGKEMLRIKDRHERDMLFGPTNEEMITEIVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE+RPRFGV RSREFLMKDAYSFDL  EG+KHSYNKMFV+
Sbjct: 121 SIKSYKSLPLNLYHIQWKFRDEVRPRFGVYRSREFLMKDAYSFDLDAEGAKHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGG+LSHEFI+LA TGE++VFC  D+++   P  + +FD
Sbjct: 181 YLRTFARMGLKAIPMVADTGPIGGNLSHEFIILASTGESEVFCHGDYLEMAPPPADVNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  ++  +V  WT  YAAT + H+   F ++P  ++++ARGIEVGHIFYFGTKYS P +A
Sbjct: 241 DAAAIQQVVNDWTTLYAATEEKHDAATFAAIPAERQMAARGIEVGHIFYFGTKYSAPFNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +H + MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF++ ++N+K  D  
Sbjct: 301 KVLGPDGAEHLIHMGSYGIGPSRLVAAMIEASHDDAGIIWPDAVAPFQVGILNLKVGDSA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YA+L+  G DV +DD  E+ GS+FA ADL+G P Q++VG K ++D KVE+K 
Sbjct: 361 VDAACADLYAKLTAAGVDVLYDDTDERAGSKFATADLIGLPWQILVGPKSLADGKVELKR 420

Query: 421 RLTGIREDMSLEEV 434
           R+ G RE ++  E 
Sbjct: 421 RVDGSRELVTPAEA 434


>gi|23501709|ref|NP_697836.1| prolyl-tRNA synthetase [Brucella suis 1330]
 gi|81847158|sp|Q8G197|SYP_BRUSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23347633|gb|AAN29751.1| prolyl-tRNA synthetase [Brucella suis 1330]
          Length = 442

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 259/436 (59%), Positives = 334/436 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRY +YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYGAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R  G R+ + +E  IN
Sbjct: 421 RKMGERQSLGIEAAIN 436


>gi|319404243|emb|CBI77836.1| Prolyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 441

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 262/443 (59%), Positives = 341/443 (76%), Gaps = 4/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E+P++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKESPKEAEVISHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEILMPTIQSADLWRESERYNDYGLEMLRIRDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+LA TGE+ +FC K F++F +PS + DF 
Sbjct: 181 YLRTFSRVGLKAIPMRADTGPIGGELSHEFIILAKTGESSIFCDKRFLEFTVPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  + ++ ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADIVRQWTSLYAATEEMHNEEEWSKVSDSNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H+V MGSYGIG  R+VAAVIESSHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHFVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYICETLYQGLIRSGFDPLLDDTSERPGSKFATMDLIGLPVQMIIGPKNATQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG+RE +++E V+N    RFS
Sbjct: 421 RKTGLREVLTVEAVLN----RFS 439


>gi|319408595|emb|CBI82250.1| Prolyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 441

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 261/439 (59%), Positives = 333/439 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+PIL+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSKYFIPILKENPKEAEIVSHRLMLRAGMIRQQTAGIYSWLPLGKKVLDKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + GA+E+ +PT+QS DLW ESGRYD YG EMLR+ DR ++ ++YGPT+EE++TDIFRS
Sbjct: 61  QKQAGALEILMPTIQSVDLWHESGRYDDYGFEMLRIKDRQERDLLYGPTNEEIVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  E +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYQIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYESAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IP RA++GPIGG+ SHEF +LA+TGE+ +FC K F+D   P  + DF 
Sbjct: 181 YLRTFSRMGLKVIPTRADTGPIGGERSHEFTILAETGESAIFCDKQFLDINAPLFSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV+QWT  YAAT ++HNE+ +  +P++ ++SARGIEVGHIFYFGTKYS+PM A
Sbjct: 241 DKTVLTDIVKQWTTFYAATEEMHNEEEWSKIPKSNQLSARGIEVGHIFYFGTKYSVPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP  +APF   +IN+K  D+ 
Sbjct: 301 KVMGKDGKEHPVFMGSYGIGPSRLVAAAIEASHDENGIIWPKPIAPFDFGIINMKPDDKK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ G +FA+ DL+G P Q+IVG K  + ++VEIK 
Sbjct: 361 CNHMCETLYQGLIRAGFDPLLDDRNERPGVKFAIMDLIGLPTQIIVGPKSAAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG +E +++E V+N  S
Sbjct: 421 RKTGAKESLTIESVLNRLS 439


>gi|170748459|ref|YP_001754719.1| prolyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|226701311|sp|B1LUL8|SYP_METRJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170654981|gb|ACB24036.1| prolyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 441

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 254/435 (58%), Positives = 334/435 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P++AEI SH+LMLR G++ Q + GIY+WLPLG + L+ V A+IR E
Sbjct: 1   MRLSRYFMPTLRETPKEAEIVSHRLMLRAGLVRQEAAGIYAWLPLGLRVLERVCAVIRRE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GA+E+ +PT+QSA+LW ESGRYD+YGKEMLRL DR+D+ M+YGPT EE++T+IFR+
Sbjct: 61  QDRSGAVEILMPTVQSAELWRESGRYDAYGKEMLRLKDRHDREMLYGPTAEEMVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQI  KFRDE+RPRFG MRSREFLMKDAYSFD    G++H+YN+MFV+
Sbjct: 121 SVRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDAYSFDFDQAGARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGGDLSHEFI+LA TGE++VFC K ++ F IP    DFD
Sbjct: 181 YLRTFAGLGLKAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDKAYLGFDIPPATVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  IV+ WT+ YAAT ++H    F  +PE+ R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQGIVDAWTSHYAATEEMHEPAAFAEVPEDSRMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF ++LIN+K  D  
Sbjct: 301 KVAGPDGIERPVHMGSYGIGPSRLVAAIIEASHDEAGIIWPDAVAPFDVALINLKVGDSA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC +I + L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ KVE+K 
Sbjct: 361 TEAACAQIQSDLEAAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKVELKR 420

Query: 421 RLTGIREDMSLEEVI 435
           R  G RE ++  +++
Sbjct: 421 RAGGERESLATVDLL 435


>gi|319405682|emb|CBI79305.1| Prolyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 441

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/443 (59%), Positives = 337/443 (76%), Gaps = 4/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AE+ SH+ MLR GMI Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEVVSHRFMLRAGMIRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERIGALEILMPTIQSADLWRESNRYNDYGLEMLRIKDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+L++TGE+ +FC K F++F IPS + DF 
Sbjct: 181 YLRTFSRIGLKAIPMRADTGPIGGELSHEFIILSETGESSIFCDKRFLEFTIPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  +V QWT+ YAAT ++HNE+ ++ +    ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADVVRQWTSLYAATEEMHNEEEWNKVSAMNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+  V MGSYGIG  R+VAAVIESSHD  GIIWP SVAPF   +IN+K  DQ 
Sbjct: 301 KIMGQDGKERLVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSVAPFDFGIINMKPDDQK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ GS+FA  DL+G P+Q+I+  K V+ ++VEIK 
Sbjct: 361 CSYICETLYQGLIRNGFDPLLDDTSERPGSKFATMDLIGLPVQMIISPKNVTQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG RE +++E     A HRF+
Sbjct: 421 RKTGFREVLTVEA----ALHRFA 439


>gi|298291828|ref|YP_003693767.1| prolyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928339|gb|ADH89148.1| prolyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 440

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 255/431 (59%), Positives = 334/431 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLPLG++ LD +  ++REE
Sbjct: 1   MRLSRYFLPILREVPKEAEIVSHRLMLRAGMIRQESAGIYAWLPLGKRVLDKICNVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R+
Sbjct: 61  QNRSGAIEILMPTIQSADLWRESGRYDDYGKEMLRIKDRHERDMLFGPTNEEMLTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYS DL  E +  +YN+MFV+
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSVDLDFESAVVAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPM A++GPIGG+ SHEFI+LA TGE+QVFC  D++    P  + DF 
Sbjct: 181 YLRTFERLGLKAIPMVADTGPIGGNHSHEFIILASTGESQVFCHSDYLGMDTPGSDVDFQ 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L +IV +WT+ YAAT + H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM+A
Sbjct: 241 DPAALQTIVNRWTSLYAATEEKHDEAAFEAIPEGQRLSARGIEVGHIFYFGTKYSEPMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG +  V MGSYGIG  R+ AA+IE+SHD  GIIWP+++APF++ L+N+K  D  
Sbjct: 301 TVAGPDGVERPVHMGSYGIGPSRLAAAIIEASHDENGIIWPEAIAPFRVGLLNLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IYA L+    DV +DD  E+ GS+FA ADL+G P Q+IVG K +++  VE+K 
Sbjct: 361 TDAACEAIYAELASRNIDVLYDDTDERPGSKFATADLIGLPWQIIVGPKGLANGMVELKR 420

Query: 421 RLTGIREDMSL 431
           R  G RE + +
Sbjct: 421 RADGTRETLPV 431


>gi|118590019|ref|ZP_01547423.1| prolyl-tRNA synthetase [Stappia aggregata IAM 12614]
 gi|118437516|gb|EAV44153.1| prolyl-tRNA synthetase [Stappia aggregata IAM 12614]
          Length = 442

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 250/436 (57%), Positives = 332/436 (76%), Gaps = 2/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGLKVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAI++ +PT+QSADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFR 
Sbjct: 61  QARAGAIQLLMPTIQSADLWRESGRYDAYGKEMLRITDRHERDMLFGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKESARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM+A++GPIGGD+SHEFI+LA+TGE++VFC K  ++ P P+E+TDF 
Sbjct: 181 YLRTFARMGLKAIPMKADTGPIGGDMSHEFIILAETGESEVFCDKSLLELPTPAEDTDF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  IV +WT PYAAT ++H+E  F +LPE+ RVSARGIEVGHIFYFGTKYS  M A
Sbjct: 240 -FSDLTPIVTEWTTPYAATDEMHDEAAFGALPEDTRVSARGIEVGHIFYFGTKYSDAMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GI+WP SVAPF + L+N+K  D++
Sbjct: 299 KVATAEGTEVPVHMGSYGVGVSRLLGALIEANHDENGIVWPKSVAPFHVGLVNLKPGDEL 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE +YA+    G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K 
Sbjct: 359 TDPVCEDLYAKFEAAGIEVLYDDTDTRAGAKFATMDLIGLPFQVVAGPRGLKDGLLEVKD 418

Query: 421 RLTGIREDMSLEEVIN 436
           R TG +E +S E  +N
Sbjct: 419 RATGEKEMLSPEATLN 434


>gi|254469374|ref|ZP_05082779.1| prolyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211961209|gb|EEA96404.1| prolyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 441

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 255/436 (58%), Positives = 334/436 (76%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLPLG + L+ +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYAWLPLGHRVLNKIQRIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRSGAVQLLMPTIQPADLWRESGRYDAYGKEMLRIEDRHEREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E S  +Y +MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKERSTEAYRRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM+A++GPIGGDLSHEFIVLA TGE++VF  KD +D PIP E+TDFD
Sbjct: 181 YLRTFARMGLTAIPMKADTGPIGGDLSHEFIVLASTGESEVFLDKDILDLPIPGEDTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L+ I+EQWT PYAAT ++++E  F ++ E+K+VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 G--DLSGIIEQWTTPYAATDEMYDEAAFGAVAEDKKVSARGIEVGHIFHFGTKYSEPMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+GK+  VQMGSYGIG  R++ A+IE+ HD  GIIWP  VAPF + LIN+KA  + 
Sbjct: 299 KVMTAEGKEVPVQMGSYGIGVSRLLGAIIEACHDDDGIIWPKEVAPFHVGLINMKAGSE- 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C + CE +YA L K G +V +DD     G +FA  DL+G P Q++VG + +   +VE+K 
Sbjct: 358 CDEVCESVYAELEKAGIEVLYDDRKTSAGQKFASMDLIGLPYQLVVGPRGLKTGEVEVKD 417

Query: 421 RLTGIREDMSLEEVIN 436
           R  G RE ++ E  +N
Sbjct: 418 RAAGDREMLTPEAAVN 433


>gi|182678768|ref|YP_001832914.1| prolyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|226699120|sp|B2IDI9|SYP_BEII9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182634651|gb|ACB95425.1| prolyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 439

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 257/437 (58%), Positives = 334/437 (76%), Gaps = 3/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q + GIY+WLPLG + L  V  I+REE
Sbjct: 1   MRLSRYFLPILRENPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGFRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PTLQ ADLW E+GRYD+YG EMLR+ DR+++ ++YGPT+E+++T+IFR+
Sbjct: 61  MDRAGAIELLMPTLQLADLWRETGRYDAYGPEMLRIKDRHERELLYGPTNEDMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  EG++ SYNKMFV+
Sbjct: 121 YVRSYRDLPKILYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEEGARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRI+ R+GL +IPMRAE+GPIGGDLSHEFI+LADTGE+ VFC+KD +D PIP E+TD+D
Sbjct: 181 YLRIYKRMGLTAIPMRAETGPIGGDLSHEFIILADTGESAVFCNKDVLDLPIPDEHTDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L+ I++QWT+ YAAT DVH+   F+S  P  KR+  RGIEVG +FYFG KYS PM 
Sbjct: 241 G--DLSPIIKQWTSLYAATEDVHDAARFESETPPEKRIERRGIEVGQVFYFGEKYSKPMR 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +   G DG +   Q GSYG+G  R+V A+IE+SHD  GIIWP++VAPF + L N+K  D 
Sbjct: 299 SLITGPDGSEKPFQGGSYGVGVSRLVGAIIEASHDEAGIIWPEAVAPFTVGLANLKVGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC +IY RL  +G DV +DD  ++ G +FA  DL+G P Q+IVG K +++ K+E+K
Sbjct: 359 ATDAACAEIYERLEALGVDVLYDDTDDRPGGKFAKLDLIGLPYQIIVGPKGLAEGKIEMK 418

Query: 420 HRLTGIREDMSLEEVIN 436
            R TG RE++S+  VI 
Sbjct: 419 TRATGARENLSIAAVIE 435


>gi|294852177|ref|ZP_06792850.1| prolyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820766|gb|EFG37765.1| prolyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 435

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 255/429 (59%), Positives = 330/429 (76%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +PIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREEQNR GA 
Sbjct: 1   MPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREEQNRAGAN 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS+++SY++
Sbjct: 61  EILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRSYVRSYKD 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVSYLR F R
Sbjct: 121 LPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVSYLRTFAR 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF +   L  
Sbjct: 181 VGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTD 240

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A  +G DG
Sbjct: 241 IVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDG 300

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ C    EK
Sbjct: 301 KEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEGCDGVSEK 360

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K R TG R+
Sbjct: 361 LYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQ 420

Query: 428 DMSLEEVIN 436
            + +E  IN
Sbjct: 421 SLGIEAAIN 429


>gi|319898898|ref|YP_004158991.1| Prolyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319402862|emb|CBI76413.1| Prolyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 442

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 257/443 (58%), Positives = 335/443 (75%), Gaps = 4/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEVVSHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ESGRY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAVEILMPTIQSADLWRESGRYNDYGLEMLRIKDRQDRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IP+RA++GPIGG+LSHEFI+LA+TGE+ +FC K F++F +P  + DF 
Sbjct: 181 YLRTFSRIGLKAIPVRADTGPIGGELSHEFIILAETGESSIFCDKRFLEFTVPPISIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  +  N +++ARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDILADIVRQWTSLYAATEEMHNEEEWSKVSTNNKLAARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H + MGSYGIG  R+VAA+IESSHD  GIIWP  + PF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHLISMGSYGIGPSRLVAAIIESSHDEHGIIWPKPITPFDCGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y RL   G D   DD  E+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYMCETLYQRLIHGGFDPLLDDTNERPGSKFATMDLIGLPIQMIIGPKSAAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  RE +++E  +N    RFS
Sbjct: 421 RKTDAREILTVEAALN----RFS 439


>gi|304391639|ref|ZP_07373581.1| prolyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303295868|gb|EFL90226.1| prolyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 451

 Score =  555 bits (1429), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 258/446 (57%), Positives = 342/446 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLP+L+E PR+AEIASH+LMLR GMI Q S GIYSWLPLG K L  V  I+REE
Sbjct: 1   MRLTQYFLPVLKEAPREAEIASHQLMLRAGMIKQQSAGIYSWLPLGLKVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++TDIFR+
Sbjct: 61  QNRAGAVEVLMPTIQSADLWRESGRYDDYGKEMLRIQDRHERDMLFGPTNEEMITDIFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  + ++ +Y +MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLNADAARAAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IPMRA++GPIGGDLSHEF++LADTGE++VFC  DF    +P    D+ 
Sbjct: 181 YLRTFDRLGVKAIPMRADTGPIGGDLSHEFLILADTGESEVFCHSDFSKKTVPDAGVDYS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   +  IV+ WT+ YA T ++H+E L+  +PE+++++ARGIEVGHIF FG+KYS PM A
Sbjct: 241 DDALIAGIVDDWTSGYARTDEMHDEALWAEVPEDEQLNARGIEVGHIFNFGSKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V+MGSYGIG  RVVAA++E+ HD  GIIWPDSVAPF + LIN+++ D+V
Sbjct: 301 KVTGPDGKDVPVEMGSYGIGPSRVVAALVEAGHDENGIIWPDSVAPFDVGLINLRSGDEV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA+LS  G DV +DD   + G +FA+ADL+G P Q+IVG + +   +VE+K 
Sbjct: 361 TDAACDDMYAQLSAAGLDVLYDDTDGRAGGKFALADLIGLPWQLIVGPRGLKTGEVELKA 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R +G R  +S++  IN  +    ++R
Sbjct: 421 RASGERHTVSIDAAINQLTAWHVDSR 446


>gi|316933915|ref|YP_004108897.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601629|gb|ADU44164.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 439

 Score =  555 bits (1429), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 252/436 (57%), Positives = 334/436 (76%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLADTGE+ VF  +D ++ P+P EN D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLADTGESGVFIDRDVLNLPVPDENVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH    ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 --ADLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R+V A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 299 ANVAGPDGTDAPIHGGSYGVGVSRLVGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P QV VG + +++ KVE+K
Sbjct: 359 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQVHVGPRGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++L +++
Sbjct: 419 RRSDGSRENLALADLV 434


>gi|188580267|ref|YP_001923712.1| prolyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|226701310|sp|B1ZA28|SYP_METPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|179343765|gb|ACB79177.1| prolyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 441

 Score =  555 bits (1429), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 254/429 (59%), Positives = 332/429 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAVEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFDL    ++HSYNK+FVS
Sbjct: 121 SARSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDLDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFETLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDRAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDSWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGQERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I + L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDAACAEIQSALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDM 429
           R +G RE +
Sbjct: 421 RASGERETL 429


>gi|121602198|ref|YP_989086.1| prolyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|152112216|sp|A1USY3|SYP_BARBK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120614375|gb|ABM44976.1| prolyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 441

 Score =  555 bits (1429), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 258/439 (58%), Positives = 328/439 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH LMLR G+I Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEIISHCLMLRAGIIRQQTSGIYSWLPLGKKVLDKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+S+PT+QSADLW ESGRYD YG EMLR+ DR ++ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEISMPTIQSADLWRESGRYDDYGLEMLRIKDRQERDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   YQIQ KFRDE+RPRFGVMRSREFLMKD YSFDL  E +K SYN+MF++
Sbjct: 121 YVRSYKDLPLNLYQIQWKFRDEIRPRFGVMRSREFLMKDGYSFDLDYESAKTSYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRA++GPIGG+LSHEFI+LA TGE+ VFC K F++   P  + DF 
Sbjct: 181 YLRTFSRIGLKVIPMRADTGPIGGELSHEFIILAKTGESAVFCDKRFLEMTAPPVSVDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L  IV+QWTA YA T ++HN + +  + ++ ++SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DNVVLTDIVKQWTALYATTEEMHNAEEWAQICKSNQLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK++ V MGSYGIG  R+VAA IE+SHD  GIIWP  + PF   +IN K+ +  
Sbjct: 301 KVMGRDGKEYPVFMGSYGIGPSRLVAAAIEASHDENGIIWPKPITPFDFGIINTKSDNAK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L   G D   DD  E+ G++FA  DL+G P Q+IVG K  +  +VEIK 
Sbjct: 361 CYGMCETLYQGLVNAGFDPLLDDRNERPGAKFATMDLIGLPTQIIVGPKSAAQDEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG +E +++E  +N  S
Sbjct: 421 RKTGTKEVLTVEAALNRLS 439


>gi|91977335|ref|YP_569994.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|123762679|sp|Q135Z6|SYP_RHOPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91683791|gb|ABE40093.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
          Length = 439

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 249/436 (57%), Positives = 332/436 (76%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D ++ P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLNLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+   ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIIQQWTSVYAATEDVHDAARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R+V A+IE+ HD  GI WP+ VAPF+++++N+K  D 
Sbjct: 299 ANVAGPDGADAPIHGGSYGVGVSRLVGAIIEACHDENGIKWPEEVAPFRVAILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L+  G DV +DD  ++ G++FA ADL+G P QV+VG K ++D KVE+K
Sbjct: 359 QTDAACEQLYRELAAKGVDVLYDDTDQRAGAKFATADLIGIPWQVLVGPKGLADGKVELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE ++L E +
Sbjct: 419 RRSDGSRETIALAEAV 434


>gi|86749715|ref|YP_486211.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|114152241|sp|Q2IWW0|SYP_RHOP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86572743|gb|ABD07300.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
          Length = 439

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 248/436 (56%), Positives = 331/436 (75%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D +  P+P E  D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLSLPVPDETVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+   ++S +PE  R+  RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIIKQWTSVYAATEDVHDAVRYESEVPEANRLHTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R+V A+IE+ HD  GIIWP+ VAPF+++++N+K  D 
Sbjct: 299 ANVAGPDGTDAPIHGGSYGVGVSRLVGAIIEACHDDNGIIWPEEVAPFRVAILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L+  G DV +DD  ++ G++FA ADL+G P QV+VG K ++D K+E+K
Sbjct: 359 ATDAACEQLYKELAAKGVDVLYDDTDQRAGAKFATADLIGIPWQVLVGPKGLADGKIELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++L E +
Sbjct: 419 RRSDGSRENIALAETV 434


>gi|39935993|ref|NP_948269.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|81829575|sp|Q6N5P6|SYP_RHOPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39649847|emb|CAE28369.1| proline-tRNA ligase [Rhodopseudomonas palustris CGA009]
          Length = 438

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 249/436 (57%), Positives = 334/436 (76%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH    ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 299 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 359 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++L +V+
Sbjct: 419 RRSDGARENLALADVV 434


>gi|27379988|ref|NP_771517.1| prolyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|81841648|sp|Q89KM8|SYP_BRAJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27353142|dbj|BAC50142.1| prolyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 439

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 251/436 (57%), Positives = 332/436 (76%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGFRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QDRSGALELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ +YNKMFV+
Sbjct: 121 YVKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLNEAAARVAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VF ++D +D P+P E+ D++
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFINRDVLDLPVPGEDVDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+   F+  +PE KR++ RGIEVG IFYFGTKYS PM 
Sbjct: 241 S--DLTPIIKQWTSVYAATEDVHDAARFEQEVPEAKRLNTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GI WP++VAPF+  ++N+K  D 
Sbjct: 299 AMVAGPDGVDVPIHGGSYGVGVSRLLGAIIEACHDDAGIKWPEAVAPFRAVVLNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+YA L   G DV +DD  ++ G++FA ADL+G P Q+++G K ++D KVE+K
Sbjct: 359 AVDAACEKLYAELQAKGVDVLYDDTDQRAGAKFAAADLIGIPWQIMIGPKGLADGKVELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE MS  + +
Sbjct: 419 RRSDGSRETMSPADAV 434


>gi|118138193|pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138194|pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138195|pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138196|pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138197|pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138198|pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138199|pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138200|pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138201|pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138202|pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
 gi|118138203|pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
 gi|118138204|pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
          Length = 458

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 249/436 (57%), Positives = 334/436 (76%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 21  MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 81  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 201 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 260

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH    ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 261 G--DLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 318

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 319 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 378

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 379 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 438

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++L +V+
Sbjct: 439 RRSDGARENLALADVV 454


>gi|209885076|ref|YP_002288933.1| prolyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|226701315|sp|B6JH58|SYP_OLICO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|209873272|gb|ACI93068.1| prolyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 441

 Score =  551 bits (1420), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 256/436 (58%), Positives = 330/436 (75%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLPIL+E P++AEIASH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLTRYFLPILKETPKEAEIASHRLMLRAGMLRQEAAGIYAWLPLGFRVLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFRS
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ SYNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAAARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC+KD +D P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCNKDVLDLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT  YAAT DVH+   +++ +P  KRV+ RGIEVG IFYFGTKYS  M 
Sbjct: 241 S--DLTPIIKQWTELYAATEDVHDAARYETEVPAEKRVNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  V  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVVGPDGVEKPVHSGSYGVGVSRLVGAIIEACHDENGIKWPEAVAPFTVAILNLKQGAS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+Y  L+  G DV +DD  ++ G +FA ADL+G P Q+++G K +++ KVEIK
Sbjct: 359 DTDAACEKLYRALTANGVDVLYDDTDQRPGGKFATADLIGIPWQILIGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE MS E+ +
Sbjct: 419 CRADGSRELMSPEDAL 434


>gi|254502934|ref|ZP_05115085.1| prolyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439005|gb|EEE45684.1| prolyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 442

 Score =  551 bits (1420), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 248/436 (56%), Positives = 332/436 (76%), Gaps = 2/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGLKVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFRS
Sbjct: 61  QARAGAVQLLMPTIQPADLWRESGRYDAYGKEMLRITDRHEREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFDL  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDLDQETARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM+A++GPIGGDLSHEFI+LA+TGE++VF  K  ++ PIP+++TDF 
Sbjct: 181 YLRTFDRMGLKAIPMKADTGPIGGDLSHEFIILAETGESEVFLDKSLLEMPIPAKDTDF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L+ IVE WT PYAAT ++H+E  F +L E+ RVSARGIEVGHIFYFGTKYS  M A
Sbjct: 240 -WSDLSPIVESWTTPYAATDEMHDEAAFGALEEDTRVSARGIEVGHIFYFGTKYSDAMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GIIWP SVAPF + +IN++  D +
Sbjct: 299 KVATAEGTEVPVHMGSYGVGVSRLLGALIEANHDEDGIIWPKSVAPFHVGIINMRPGDDL 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE +YA+L   G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K 
Sbjct: 359 TDPVCEDLYAKLEAAGIEVLYDDTDSRAGAKFATMDLIGLPFQVVAGPRGLKDGVLEVKD 418

Query: 421 RLTGIREDMSLEEVIN 436
           R TG +E ++ E  +N
Sbjct: 419 RATGEKEMLTPEATLN 434


>gi|192291648|ref|YP_001992253.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|226701325|sp|B3Q7L2|SYP_RHOPT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|192285397|gb|ACF01778.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 438

 Score =  551 bits (1420), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 249/436 (57%), Positives = 334/436 (76%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH    ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 299 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 359 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++L +V+
Sbjct: 419 RRSDGSRENLALADVV 434


>gi|16126174|ref|NP_420738.1| prolyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221234945|ref|YP_002517381.1| prolyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|81856261|sp|Q9A6Z5|SYP_CAUCR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782893|sp|B8GWT1|SYP_CAUCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13423386|gb|AAK23906.1| prolyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220964117|gb|ACL95473.1| prolyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 443

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 254/436 (58%), Positives = 329/436 (75%), Gaps = 1/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRSSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLNKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + +++GPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRELLFGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  +G++ SYN+MFV+
Sbjct: 121 SIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDADGARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++ P P  + D+ 
Sbjct: 181 YLNLFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMPAPGPDLDWI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  +V Q TA YAAT ++H+E  F++LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 241 N-GDLQPLVNQRTALYAATEEMHDEAAFNALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+   VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + ++N++  D  
Sbjct: 300 TVQGPDGQQVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGIVNMRQGDAA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L   G +V +DD   + G++FA  DL+G P Q+IVG K +++  VEIKH
Sbjct: 360 CDAACETAYNALKAAGREVLYDDTDARGGAKFATMDLIGLPWQLIVGPKGIAEGVVEIKH 419

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R   SLE V++
Sbjct: 420 RKTGERHTASLESVLD 435


>gi|85717006|ref|ZP_01047968.1| prolyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85696130|gb|EAQ34026.1| prolyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 439

 Score =  548 bits (1412), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 253/436 (58%), Positives = 329/436 (75%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR 
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAGARRSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D P+P  + D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPVPGTDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  IV+QWT  YAAT DVH+   ++  +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIVKQWTVAYAATEDVHDGPRYEREVPEERRVHTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
               G DG +  +  GSYG+G  R+V A+IE+ HD  GI WPD+VAPF+++++N+K    
Sbjct: 299 TLVTGPDGVEQPIHGGSYGVGVSRLVGAIIEACHDEGGIKWPDAVAPFRVAILNLKQGAG 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE+IY  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDAACERIYRELSAKGIDVLYDDTDQRAGAKFATADLIGIPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++LE+V+
Sbjct: 419 RREDGSRENVALEDVV 434


>gi|114799658|ref|YP_760468.1| prolyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123323241|sp|Q0C1C5|SYP_HYPNA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114739832|gb|ABI77957.1| prolyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 439

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 249/435 (57%), Positives = 329/435 (75%), Gaps = 2/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+FLP+ +E P DA I SH+LMLRTGMI Q+  GIYSWLPLG + L  +  I+REE
Sbjct: 1   MRLSKFFLPVSKEAPADAAIVSHQLMLRTGMIRQNGAGIYSWLPLGYRVLKRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIEM +PTLQ ADLW ESGRYD YGKEMLR+ DR+++ M+YGPT+EE++TD+FR+
Sbjct: 61  MNRAGAIEMLMPTLQQADLWRESGRYDDYGKEMLRIKDRHERDMLYGPTNEELITDVFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y  Q KFRDE+RPRFGVMR REFLMKDAYSFDLT E ++ +Y KMF +
Sbjct: 121 YVKSYKQLPLNLYHQQWKFRDEVRPRFGVMRGREFLMKDAYSFDLTEEDARAAYRKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GL +IPMRA++GPIGGDLSHEFI+LADTGE+ VFC K  +D P P  + DF+
Sbjct: 181 YLNAFDRMGLTAIPMRADTGPIGGDLSHEFIILADTGESAVFCDKALLDLPAPGLDLDFE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L   V + T  YAAT ++H+E  F++LPE++RVSARGIEVGHIF+FGTKYS PM+A
Sbjct: 241 S--DLTPFVTERTGYYAATEEMHDEAAFNALPEDRRVSARGIEVGHIFFFGTKYSKPMNA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DG+   VQMGSYGIG  R++ A+IE+ HD  GI+WP+SVAPF + LIN++  ++ 
Sbjct: 299 VVQGPDGQMVPVQMGSYGIGVSRLLGAIIEACHDENGIVWPESVAPFDVGLINMRPGNEA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC  +YA L+  G +V +D+  ++ G++FA  DL+G P Q  VG + V++ KVE+K+
Sbjct: 359 CDAACNTLYAALTAAGREVLYDETDDRAGAKFARMDLIGLPWQTTVGPRGVTEGKVEVKN 418

Query: 421 RLTGIREDMSLEEVI 435
           R TG + D+ +E+++
Sbjct: 419 RKTGEKHDVKIEDML 433


>gi|75676056|ref|YP_318477.1| prolyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|114152223|sp|Q3SRG6|SYP_NITWN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|74420926|gb|ABA05125.1| Prolyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 439

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 252/436 (57%), Positives = 327/436 (75%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR 
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYN+MFV+
Sbjct: 121 YIRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAGARRSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D PIP    D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPIPGTEVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  IV QWT  YAAT DVH+   ++  +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIVRQWTTAYAATEDVHDGPRYEREVPEERRVHTRGIEVGQIFYFGTKYSESMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVTGTDGVEQPIHGGSYGVGVSRLVGAIIEACHDEAGIKWPEAVAPFTVAILNLKQGAS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +ACE+IY  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDEACERIYRELSARGVDVLYDDTDQRAGAKFATADLIGSPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++LE+ +
Sbjct: 419 RRGDGSRENVALEDAV 434


>gi|83592911|ref|YP_426663.1| prolyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|114152243|sp|Q2RU19|SYP_RHORT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83575825|gb|ABC22376.1| Prolyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
          Length = 435

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/435 (59%), Positives = 319/435 (73%), Gaps = 5/435 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ LP L+E P +AEI SH+LMLR GMI QH+ GIY+WLPLG + L  +  ++REE
Sbjct: 1   MRLSRFLLPTLKETPSEAEIVSHRLMLRAGMIRQHASGIYNWLPLGLRVLRKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+ TGA E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M+YGPTHEEV TD+FR 
Sbjct: 61  QDATGAQEILMPTIQSADLWRESGRYDDYGKEMLRIVDRHERDMLYGPTHEEVATDVFRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDLT EG++HSYNKMFV+
Sbjct: 121 NVKSYRALPQNLYQIQWKFRDEVRPRFGVMRGREFLMKDNYSFDLTYEGARHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPM A++GPIGG LSHEFI+LADTGE+ VFC +D +D P P EN D+D
Sbjct: 181 YLRTFARLGLKAIPMAADTGPIGGKLSHEFIILADTGESAVFCHRDLLDKPAP-ENVDYD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +V+ WT+ YAAT ++H       +PE   VSARGIEVGHIF+FGTKYS PM A
Sbjct: 240 S--DLQPLVDSWTSLYAATDEMHRPD--HGVPEGDLVSARGIEVGHIFHFGTKYSAPMGA 295

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V MGSYGIG  R+VA +IE+SHD  GIIWPD VAPF I +IN+K  D  
Sbjct: 296 TVTAPDGSSQAVFMGSYGIGVSRLVAGIIEASHDDNGIIWPDGVAPFDIGVINLKVGDAA 355

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C  +Y RL   G DV +DD  ++ G++FA  DL+G P QVI G K V+   VE+K 
Sbjct: 356 TDGVCADLYGRLRAAGKDVLFDDTDDRAGAKFATMDLIGLPWQVIAGPKGVAKGMVELKE 415

Query: 421 RLTGIREDMSLEEVI 435
           R TG R ++S++  +
Sbjct: 416 RATGERHELSIDSAL 430


>gi|295689605|ref|YP_003593298.1| prolyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295431508|gb|ADG10680.1| prolyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 443

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/436 (58%), Positives = 328/436 (75%), Gaps = 1/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRLSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLNKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + +++GPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRELLFGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE RPRFGVMR REF MKDAYSFDL  +G++ SYN+MFV+
Sbjct: 121 SIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFFMKDAYSFDLDADGARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++ P P  + D+ 
Sbjct: 181 YLNLFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMPAPGPDLDWI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV Q TA YAAT ++H+E  F++LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 241 N-GDLQPIVNQRTALYAATEEMHDEAAFNALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+   VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + ++N++  D  
Sbjct: 300 TVQGPDGQQVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGIVNMRQGDAA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L   G DV +DD   + G++FA  DL+G P Q+IVG K +++  VEIK+
Sbjct: 360 CDAACETAYNALKAAGRDVLYDDTDARGGAKFATMDLIGLPWQLIVGPKGIAEGVVEIKN 419

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R   SL+ V++
Sbjct: 420 RKTGERHTASLDSVLD 435


>gi|329850610|ref|ZP_08265455.1| prolyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328840925|gb|EGF90496.1| prolyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 443

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 247/436 (56%), Positives = 332/436 (76%), Gaps = 4/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP+L+ENP +A+I SH+LMLRTGMI Q + GIY+WLPLG K L  V  I+ EE
Sbjct: 1   MRLSRFFLPLLKENPAEAQIVSHRLMLRTGMIRQQAAGIYAWLPLGLKVLRKVERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+I++ +PTLQ ADLW ESGRY+ YG+EMLR+ DR+D+ ++YGPT EE +T++FR+
Sbjct: 61  MARAGSIQLLMPTLQLADLWRESGRYEDYGQEMLRIKDRHDRDLLYGPTAEEAVTEVFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQI  KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF++
Sbjct: 121 SVKSYKDLPLNLYQISWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEASARKAYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFI+LADTGE+ VFC KD +D P P  + D++
Sbjct: 181 YLNTFSRMGLKAVPMRADTGPIGGDLSHEFIILADTGESAVFCHKDLVDMPAPGHDVDWN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  +V+Q TA YAAT ++H+E  F  +PE+K++SARGIEVGHIFYFG KYS PM A
Sbjct: 241 D---LQGLVDQRTALYAATEEMHDEAAFGEVPEDKKLSARGIEVGHIFYFGEKYSKPMKA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG +  V MGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF +++IN++  D+ 
Sbjct: 298 TVNGPDG-EVTVHMGSYGVGVSRLLGAIIEASHDEAGIIWPESVAPFDVAVINLRPGDEA 356

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK YA L+  G DV ++D  E+ G++FA  DL+G P Q+I+G K +++ KVE+K 
Sbjct: 357 CDAACEKAYAALTAAGRDVLYNDTDERPGAKFASMDLIGIPWQLIIGPKGLAEGKVELKQ 416

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R+    ++V+N
Sbjct: 417 RATGERQTALFDDVLN 432


>gi|148255883|ref|YP_001240468.1| prolyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|166980102|sp|A5EK68|SYP_BRASB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146408056|gb|ABQ36562.1| Prolyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
          Length = 444

 Score =  545 bits (1403), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 250/436 (57%), Positives = 326/436 (74%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGFKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++TDIFR+
Sbjct: 61  QNRAGALELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL   G++ +YNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D +D PIP  + D+D
Sbjct: 181 YLRTFARMGLKGIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLDLPIPPASVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+   F++ +PE +R+  RGIEVG IFYFGTKYS PM 
Sbjct: 241 G--DLTPIIKQWTSLYAATEDVHDGARFEAEVPEERRLHTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+  A+IE+ HD  GI WP+ VAPF+  ++N+K    
Sbjct: 299 ALVAGPDGAEVTIHGGSYGVGVSRLAGAIIEACHDDAGIKWPEEVAPFRAVILNLKQGGS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEQLYRDLLAKGVDVLYDDTEQRAGGKFATADLIGIPWQIMVGPKSLAEGKVEVK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G R+ MS  +V+
Sbjct: 419 TRSDGARQMMSPADVV 434


>gi|315499825|ref|YP_004088628.1| prolyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315417837|gb|ADU14477.1| prolyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 439

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 243/436 (55%), Positives = 326/436 (74%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y LP+L+ENP +A+I SH+LMLRTGMI Q + GIY+WLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYLLPLLKENPSEAQIVSHRLMLRTGMIRQEAAGIYAWLPLGLRVLRKIEKIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ M+YGPT+EE++T+IFR 
Sbjct: 61  MQRAGAVELLMPTLQLADLWRESGRYDDYGQEMLRIKDRHEREMLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF++
Sbjct: 121 TVKSYKDLPMNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEASARKAYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PMRA++GPIGGDLSHEFI+LA+TGE+ VFC KD +D P P  + D+D
Sbjct: 181 YLNTFSRLGLKAVPMRADTGPIGGDLSHEFIILAETGESAVFCHKDLVDMPAPGADVDWD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  +V+Q T+ YAAT ++H+E  F+++P +K++SARGIEVGHIFYFG KYS PM A
Sbjct: 241 D---LQGLVDQRTSLYAATEEMHDEAAFNAVPADKQLSARGIEVGHIFYFGEKYSAPMGA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              GADG    V MGSYG+G  R++  +IE+SHD  GIIWP+SV PF ++L+N++  D+ 
Sbjct: 298 KVSGADGSQVNVHMGSYGVGVSRLIGGIIEASHDEAGIIWPESVTPFDVALVNLRVGDEA 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK Y  L   G DV + D  ++ G++FA  DL+G P Q+I+G K +++ +VEIKH
Sbjct: 358 CDAACEKAYKALKAAGRDVLYHDTDDRPGAKFASMDLIGIPWQLIIGPKGIAEGQVEIKH 417

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R   + + V+ 
Sbjct: 418 RATGERHTAAFDAVLE 433


>gi|92117720|ref|YP_577449.1| prolyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|123083656|sp|Q1QLA8|SYP_NITHX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91800614|gb|ABE62989.1| prolyl-tRNA synthetase [Nitrobacter hamburgensis X14]
          Length = 439

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 249/437 (56%), Positives = 329/437 (75%), Gaps = 3/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFRS
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYN+MFV+
Sbjct: 121 YVRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEVGARLSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D P+P  + D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPVPGTDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  IV+QWT  YAAT DVH+   ++  +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIVKQWTTAYAATEDVHDGARYEREVPEERRVHTRGIEVGQIFYFGTKYSESMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVAGPDGVEQPIHGGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFTVAILNLKQGAG 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDAACERLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVIN 436
            R  G RE+++LE+ + 
Sbjct: 419 RRGDGTRENVALEDAVE 435


>gi|307942137|ref|ZP_07657488.1| prolyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307774423|gb|EFO33633.1| prolyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 443

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 247/437 (56%), Positives = 329/437 (75%), Gaps = 3/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLP+G + L  +  I+ EE
Sbjct: 1   MRLSKYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPMGHRVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+++ +PT+QSA+LW ESGRYD+YGKEMLR+ DR+++ +++GPT+EE++TDIFR 
Sbjct: 61  QNRAGAVQLLMPTIQSAELWRESGRYDAYGKEMLRITDRHERDILFGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKESAVESYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPM+AE+GPIGGDLSHEFIVLADTGE++V+C  D++    P E+ +FD
Sbjct: 181 YLRTYKRMGLTAIPMKAETGPIGGDLSHEFIVLADTGESEVYCHADYLTKQTPGEDVNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               LN IV  WT+ YAAT DV ++  F++ +PE+KR+ ARGIEVG  FYFGTKYS PM 
Sbjct: 241 G--DLNPIVNDWTSHYAATEDVVDKAAFEAKVPEDKRIVARGIEVGQTFYFGTKYSEPMG 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G+DGK+  V MGSYG+G  R++ A+IE+SHD  GIIW  SVAPF + LIN+K  D+
Sbjct: 299 AKVAGSDGKEVPVHMGSYGVGVSRLLGALIEASHDDAGIIWHKSVAPFHVGLINLKPGDE 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE +YA+    G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K
Sbjct: 359 TTDAACEDLYAKFEAAGVEVLYDDTDNRAGAKFASMDLIGLPYQVVAGPRGLKDGVLEVK 418

Query: 420 HRLTGIREDMSLEEVIN 436
           +R TG +E ++ E  +N
Sbjct: 419 NRATGEKEMLTPEATLN 435


>gi|299135009|ref|ZP_07028200.1| prolyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298589986|gb|EFI50190.1| prolyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 445

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 249/435 (57%), Positives = 328/435 (75%), Gaps = 3/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLTRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGFRVLKKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QDRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR+LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYNKMFV+
Sbjct: 121 YVKSYRSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC+KD +D P+P  + ++D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCNKDVLDLPVPGADVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT  YAAT DVH+   ++  +P +KRV+ RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIIKQWTELYAATEDVHDTARYEKEVPADKRVNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G+DG +  +  GSYGIG  R+V A+IE+ HD  GI WP+ VAPF+++++N+K    
Sbjct: 299 ALVVGSDGAEKPIHGGSYGIGVSRLVGAIIEACHDENGIQWPEEVAPFRVAILNLKQGAA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+Y  LS  G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVEIK
Sbjct: 359 DTDTACEKLYKELSAAGVDVLYDDTDQRPGGKFATADLIGIPWQILVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEV 434
            R  G RE MS++E 
Sbjct: 419 KRADGSREMMSVDEA 433


>gi|167646774|ref|YP_001684437.1| prolyl-tRNA synthetase [Caulobacter sp. K31]
 gi|189083491|sp|B0SZ28|SYP_CAUSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167349204|gb|ABZ71939.1| prolyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 445

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/435 (58%), Positives = 323/435 (74%), Gaps = 2/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  V  I+REE
Sbjct: 1   MRLSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLKKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + ++YGPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRDLLYGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  EG++ +YN+MFV+
Sbjct: 121 SVKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDAEGARKAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++   P  + D+ 
Sbjct: 181 YLNLFSRMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMAAPGPDIDW- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +V + TA YAAT ++H+E  F +LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 240 -YGDLQPLVNERTALYAATEEMHDEAAFAALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + +IN++  D  
Sbjct: 299 LVTGPDGKDVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGVINMRQGDAA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +ACE  Y  L   G DV +DD   + G++FA  DL+G P Q+IVG K +++  VE+K+
Sbjct: 359 CDEACETAYKALQAAGRDVLYDDNDTRGGAKFATMDLIGVPWQLIVGPKGIAEGVVELKN 418

Query: 421 RLTGIREDMSLEEVI 435
           R TG R    L EVI
Sbjct: 419 RKTGERHSAPLAEVI 433


>gi|146341083|ref|YP_001206131.1| prolyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|166980103|sp|A4YVI0|SYP_BRASO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146193889|emb|CAL77906.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Bradyrhizobium sp. ORS278]
          Length = 444

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 248/436 (56%), Positives = 326/436 (74%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGFKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGALELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL   G++ +YNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C ++ +D PIPS + D+D
Sbjct: 181 YLRTFARMGLKGIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRNVLDLPIPSASVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I+++WT+ YAAT DVH+   F++ +P  +RV  RGIEVG IFYFGTKYS PM 
Sbjct: 241 G--DLTPIIKEWTSLYAATEDVHDGARFEAEVPAERRVHTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+  A+IE+ HD  GI WP+ VAPF+  ++N+K    
Sbjct: 299 ALVAGPDGAEVTIHGGSYGVGVSRLAGAIIEACHDDAGIKWPEEVAPFRAVILNLKQGGS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEQLYRDLLAKGVDVLYDDTEQRAGGKFATADLIGIPWQIMVGPKSLAEGKVEVK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE MS  +++
Sbjct: 419 TRSDGAREMMSPADIV 434


>gi|254418115|ref|ZP_05031839.1| prolyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196184292|gb|EDX79268.1| prolyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 438

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 249/437 (56%), Positives = 327/437 (74%), Gaps = 4/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPTLKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR+
Sbjct: 61  QQRAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 YVKSYKSLPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDVDEASARKAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC K  ++ P P  + D+D
Sbjct: 181 YLNTFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCDKALVEMPAPGADVDWD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D   L SIV+Q TA YAAT ++H+E  F++   E  R+SARGIEVGHIFYFG KYS PM 
Sbjct: 241 D---LQSIVDQRTALYAATEEMHDEARFEAETAEGDRLSARGIEVGHIFYFGEKYSAPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG+D  V MGSYG+G  R++ A+IE+SHD  GIIWPD+VAPF + +IN++A+D 
Sbjct: 298 AKVAGPDGQDAEVHMGSYGVGVSRLLGAIIEASHDEGGIIWPDAVAPFDVVVINLRANDA 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE   A+L K+G DV +DD  E+ G +FA ADL+G P Q+ +G K ++D  VE+K
Sbjct: 358 AVSAACEDAVAQLEKLGKDVLYDDTDERPGGKFATADLIGVPWQLTIGPKGLADGVVELK 417

Query: 420 HRLTGIREDMSLEEVIN 436
            R TG +  + L E I 
Sbjct: 418 RRATGEKVSVPLAEAIE 434


>gi|115524551|ref|YP_781462.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|122296196|sp|Q07NK2|SYP_RHOP5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115518498|gb|ABJ06482.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
          Length = 439

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 241/436 (55%), Positives = 326/436 (74%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARRAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C  + ++ P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESAVYCDSEVLNLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH  + FD  +P  +++  RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIIKQWTSVYAATEDVHEAERFDREVPAERKLHTRGIEVGQIFYFGTKYSEAMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R++ A+IE+ HD  GI WP++VAPF+ +++N+K    
Sbjct: 299 ALVAGPDGVEVPIHGGSYGVGVSRLLGAIIEACHDENGIKWPEAVAPFRAAILNLKQGAA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G++FA ADL+G P Q++VG K ++D  VE+K
Sbjct: 359 ETDAACEQLYRELIAKGVDVLYDDTDQRAGAKFATADLIGIPWQILVGPKGLADGTVELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++L E +
Sbjct: 419 RRADGSRENVALAEAV 434


>gi|217976887|ref|YP_002361034.1| prolyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|254782909|sp|B8EP84|SYP_METSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217502263|gb|ACK49672.1| prolyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 440

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 249/437 (56%), Positives = 324/437 (74%), Gaps = 3/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG + L  V  I+R+E
Sbjct: 1   MRLSRYFLPILRENPKEAEIVSHRLMLRAGMIRQEAAGIYSWLPLGLRVLQKVAEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PTLQ ADLW E+GRY++YG EMLR+ DR+++ M+YGPT+E+++T IFRS
Sbjct: 61  MNRAGAIELLMPTLQLADLWRETGRYEAYGPEMLRIKDRHEREMLYGPTNEDMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFVS
Sbjct: 121 YVRSYRELPKILYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARLAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF R+GL+ IPMRAE+GPIGGD SHEFI+LA+TGE+ V+C    ++ PIP E  D+D
Sbjct: 181 YLRIFARMGLRVIPMRAETGPIGGDQSHEFIILAETGESAVYCDAGVLNLPIPDETIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L+ IV+QWT+ YAAT DVH+ + F     E +R+  RGIEVG +F+FG KYS PM+
Sbjct: 241 G--DLSPIVKQWTSLYAATEDVHDAERFALETTEGQRIETRGIEVGQVFFFGDKYSKPMN 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +   Q GSYG+G  R+V A+IE++HD  GIIWP SVAPFK+ + N+K  D 
Sbjct: 299 ANIAGPDGVERPFQGGSYGVGVSRLVGALIEANHDEAGIIWPASVAPFKVGIANLKVGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+ A L K G DV +DD  ++ G++FA  DL+G P Q IVG K +++ K+EIK
Sbjct: 359 ATDAACEKLLAALEKAGVDVLYDDSADRPGAKFAKLDLIGLPYQAIVGPKGLAEGKIEIK 418

Query: 420 HRLTGIREDMSLEEVIN 436
            R +G R ++SL+E I 
Sbjct: 419 TRASGERVELSLDEAIE 435


>gi|154253644|ref|YP_001414468.1| prolyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|171769681|sp|A7HY28|SYP_PARL1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154157594|gb|ABS64811.1| prolyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 439

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 245/436 (56%), Positives = 329/436 (75%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+ENP +A+IASH+LMLR GM+ Q + GIY+WLPLG   L  +  I+R+E
Sbjct: 1   MRLSRYFLPTLKENPAEAQIASHRLMLRAGMVRQTAAGIYAWLPLGLAVLRKIEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PTLQSADLW +SGRYD+YG EMLR+ DR+++ M+YGPT+EE++TDIFR 
Sbjct: 61  QKRAGAIELLMPTLQSADLWRQSGRYDAYGPEMLRIVDRHERDMLYGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   + IQ KFRDE+RPRFGVMR REFLMKD YSFDL  EG++ +Y KMFVS
Sbjct: 121 AVRSYRDLPRNLFHIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDVEGARRAYRKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGGD+SHEFI+LA+TGE+ VFC +D +D  +P ++ D++
Sbjct: 181 YLRSFARMGLKAIPMAADTGPIGGDMSHEFIILAETGESAVFCHRDLVDMAVPGDDIDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               LN ++   T  YAAT + H+   FD+ +P++K++SARGIEVGHIF+FGTKYS  M 
Sbjct: 241 --TDLNPVIAARTDLYAATDEKHDAAKFDAEVPKDKQLSARGIEVGHIFFFGTKYSQSMG 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DGK+  VQMGSYGIG  R+V A+IE+SHD  GI+WPD+VAPF + LIN+K+ D 
Sbjct: 299 ALVTGPDGKEVPVQMGSYGIGVSRLVGAIIEASHDDAGIVWPDAVAPFTVGLINLKSGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE IY +L+  G DV +DD  E+ G++F+  DL+G P Q+++G + +    VE+K
Sbjct: 359 ETDAACESIYEKLTAQGIDVLYDDTDERAGAKFSNMDLIGLPWQLVIGPRGLKSGTVELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R TG +E++S E  +
Sbjct: 419 RRATGEKEELSPEAAL 434


>gi|90423927|ref|YP_532297.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|114152242|sp|Q215F8|SYP_RHOPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|90105941|gb|ABD87978.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 439

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 244/436 (55%), Positives = 325/436 (74%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGLRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE  +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIECLMPTLQLADLWRESGRYDAYGPEMLRITDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+NLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVRSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC  D ++ P+P ++ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCDSDVLNLPVPGDDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+ + F+  +P +K+++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 G--DLTPIIKQWTSVYAATEDVHDAERFEREVPADKKLNTRGIEVGQIFYFGTKYSDKMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  V  GSYG+G  R+V A+IE+ HD  GI WP+ VAPF+ +++N+K    
Sbjct: 299 ALVAGPDGVDVPVHGGSYGVGVSRLVGAIIEACHDENGIKWPEEVAPFRAAILNLKQGSA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE +Y  LS  G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEALYKELSAKGVDVLYDDTDQRAGGKFATADLIGIPWQILVGPKGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVI 435
            R  G RE+++  E +
Sbjct: 419 RRADGSRENVTPAEAV 434


>gi|83858393|ref|ZP_00951915.1| prolyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83853216|gb|EAP91068.1| prolyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 442

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 248/437 (56%), Positives = 325/437 (74%), Gaps = 4/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPVLKETPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PTLQ ADLW ESGRYD YGKEMLR+ DR+++ ++YGPT+EE++T+IFR 
Sbjct: 61  QDRAGAIELLMPTLQPADLWRESGRYDDYGKEMLRIVDRHERDLLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + +SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  EG+  +YNKMFV+
Sbjct: 121 YCRSYKDLPKILYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDYEGAVKAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLKS+PMRA++GPIGG LSHEFI+LA+TGE++VFC    +D P P E  DFD
Sbjct: 181 YLNTFARMGLKSVPMRADTGPIGGKLSHEFIILAETGESEVFCDSRLVDMPAPGE-VDFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L   V+Q TA YAAT ++H+   F++ +PE +R+SARGIEVGHIF FGTKYS PM 
Sbjct: 240 G--DLQPYVDQRTALYAATEEMHDAARFEAEVPEERRLSARGIEVGHIFNFGTKYSDPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DGK+  V MGSYG+G  R++ A+IE+SHD  G+IWP++VAPF   +IN++A D 
Sbjct: 298 AQVAGPDGKETAVHMGSYGVGVSRLLGAIIEASHDENGVIWPEAVAPFGAGVINMRAGDA 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C  A ++IY +L   G +   DD     G++FA  DL+G P QVIVG + + + K E+K
Sbjct: 358 DCAKAADEIYTKLDAAGLEPLLDDTAASAGAKFATMDLIGVPYQVIVGPRGLKEGKAEVK 417

Query: 420 HRLTGIREDMSLEEVIN 436
            R +G R ++SLE+ +N
Sbjct: 418 IRASGERHELSLEDAVN 434


>gi|114569925|ref|YP_756605.1| prolyl-tRNA synthetase [Maricaulis maris MCS10]
 gi|122316107|sp|Q0APX0|SYP_MARMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114340387|gb|ABI65667.1| prolyl-tRNA synthetase [Maricaulis maris MCS10]
          Length = 444

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 244/436 (55%), Positives = 325/436 (74%), Gaps = 2/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DAEI SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPVLKETPSDAEIVSHQLMLRAGMIKQEAAGIYAWLPLGHRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+QSADLW ESGRYD YG EMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QDRAGAVELLMPTIQSADLWRESGRYDDYGDEMLRITDRHDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSY+++P   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YCKSYKDVPKLLYHIQWKFRDERRPRFGVMRGREFLMKDAYSFDVDEAAARRSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PM+A++GPIGGDLSHEFIVLA+TGE++VFC  D ++   P  + DFD
Sbjct: 181 YLNTFARLGLKAVPMQADTGPIGGDLSHEFIVLAETGESEVFCHADLVEMGAPGLDVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +V+Q TA YAAT ++H  + F ++P ++++SARGIEVGHIF FGTKYS PM A
Sbjct: 241 G--DLQPLVDQRTALYAATEEMHQPEEFAAVPADRQLSARGIEVGHIFNFGTKYSEPMKA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +  DG+   V MGSYG+G  R++ A+IE+ HD KG IWP+SVAPF   +IN++  D+ 
Sbjct: 299 TVQHQDGQPRPVHMGSYGVGVSRLLGAIIEAHHDEKGCIWPESVAPFGAGIINMRVGDEA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L K G D  +DD   + G++FA ADL+G P Q++VG + + + K+E+K 
Sbjct: 359 CDAACETAYQGLVKAGLDPLYDDTDSRAGAKFATADLIGLPYQLVVGPRGLKEGKIELKV 418

Query: 421 RLTGIREDMSLEEVIN 436
           R TG   +MS E+ ++
Sbjct: 419 RRTGETHEMSPEDAVS 434


>gi|254294083|ref|YP_003060106.1| prolyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254042614|gb|ACT59409.1| prolyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 441

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 236/437 (54%), Positives = 325/437 (74%), Gaps = 3/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+FLP+L+E P +A+I SH+LMLR GM+ Q   GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSKFFLPVLKETPAEAKIISHQLMLRAGMVKQTGSGIYTWLPLGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+D+ M++GPT+EEV+TDIFRS
Sbjct: 61  QNRAGAIELLMPTIQPADLWKESGRYDAYGKEMLRITDRHDREMLFGPTNEEVITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+    ++ SY KMF +
Sbjct: 121 YVKSYKQLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDVNEVEARKSYYKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFI+LA+TGE++VFC  + ++ P P  +   D
Sbjct: 181 YLNTFSRMGLKAVPMRADTGPIGGDLSHEFIILAETGESEVFCDAELVNMPPPGLDL--D 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L    E+ T  YAAT ++H++  F+S +PE +RVSARGIEVGHIF FGTKYS PM 
Sbjct: 239 FDSDLLGEFEKRTQYYAATEEMHDQTKFESEVPEERRVSARGIEVGHIFNFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A     +GK+  V MGSYG+G  R++ A+IE+ HD KG+IWP+ VAPFK +++N++  D+
Sbjct: 299 AKVMTPEGKEAPVHMGSYGVGVSRLLGAIIEACHDDKGVIWPEEVAPFKSAVVNLRQGDE 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C  ACE +YA+L   G D  +DD  ++ G++ +  +L+G P  +++G + + +  VE+K
Sbjct: 359 ACDKACEDVYAKLRATGLDPMYDDRDDRPGAKLSTLELIGIPKAIVIGPRGLKNGVVEVK 418

Query: 420 HRLTGIREDMSLEEVIN 436
            R++G+ E+MSL+  +N
Sbjct: 419 DRISGVTEEMSLDAALN 435


>gi|254488857|ref|ZP_05102062.1| prolyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214045726|gb|EEB86364.1| prolyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 446

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 237/446 (53%), Positives = 321/446 (71%), Gaps = 5/446 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRYDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+  LF  +P++++ +ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVLEEFTSRYARTDETHDAALFSEVPQDRQRTARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  ++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADSACQALYDSITALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHR 441
           R TG  E+M+ E+ +      YA HR
Sbjct: 421 RRTGESEEMAPEDAVQKIAEIYAKHR 446


>gi|329889349|ref|ZP_08267692.1| prolyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
 gi|328844650|gb|EGF94214.1| prolyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
          Length = 438

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 238/437 (54%), Positives = 319/437 (72%), Gaps = 4/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+R+E
Sbjct: 1   MRLSRYFLPILKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLRKIEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR+
Sbjct: 61  QVKAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ +Y +MF +
Sbjct: 121 YVKSYKALPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDEASARIAYKRMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PMRA++GPIGGDLSHEFIVLA+TGE++VFC +  ++   P  N   +
Sbjct: 181 YLNTFARLGLKAVPMRADTGPIGGDLSHEFIVLAETGESEVFCDRKLVEMAAPGHNLSVE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  +  + TA YAAT ++H+   F++   E  R+SARGIEVGHIFYFGTKYS  M 
Sbjct: 241 ---QLEGVFNERTALYAATEEMHDAAQFETQTAEGDRLSARGIEVGHIFYFGTKYSAAMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G +G+D  V MGSYG+G  R++ A+IE+SHD  GIIWPDSVAPF + +IN++A D+
Sbjct: 298 AKVAGPNGQDTEVHMGSYGVGVSRLLGAIIEASHDEGGIIWPDSVAPFDVVVINLRASDE 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE   A+L  +G DV +DD  E+ G +FA ADL+G P Q+ +G K ++D  VE+K
Sbjct: 358 AVSAACEDAVAKLEALGKDVLYDDTDERPGGKFATADLIGVPWQLTIGPKGLADGVVELK 417

Query: 420 HRLTGIREDMSLEEVIN 436
            R TG ++ +SL+  + 
Sbjct: 418 RRATGEKQSLSLDAALE 434


>gi|119384044|ref|YP_915100.1| prolyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|152112938|sp|A1B1L0|SYP_PARDP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119373811|gb|ABL69404.1| prolyl-tRNA synthetase [Paracoccus denitrificans PD1222]
          Length = 450

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 233/435 (53%), Positives = 316/435 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P+L+E+P++A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFMPVLKEDPKEAQIVSHRLMLRAGMIKQQAAGIYSWLPLGYKVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QARAGHIAMLMPTLQSADLWRESGRYDDYGEEMLRIKDRHKRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYHVQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGDRRIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+    +++E++T+ YA T + H+  LF+ +P+ +R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 DVAQCRAVLEEFTSRYARTDETHDAALFEQIPKERRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVGPDGSRVPVHMGSHGIGVSRLLGAIIEASHDDRGIIWPEGVTPFHVGIVNLKQGDAS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L   G D  +DD  E+ G++FA  DL+G P ++ VG + ++ +KVE+  
Sbjct: 361 TDGACEALYAELKAQGLDALYDDRDERAGAKFATMDLVGLPWRITVGPRGLAANKVELTS 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG   +MS +E +
Sbjct: 421 RRTGESVEMSPQEAV 435


>gi|83942873|ref|ZP_00955333.1| prolyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83845881|gb|EAP83758.1| prolyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 446

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 237/436 (54%), Positives = 314/436 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGR+D+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRFDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVGSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYTFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF  +P  ++ SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVMEEFTSRYARTDETHDEALFAEVPAERQRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNALYASLQALGLDPLYDDTKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG  E+M+ E  I 
Sbjct: 421 RRTGESEEMTPEAAIE 436


>gi|83954043|ref|ZP_00962763.1| prolyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83841080|gb|EAP80250.1| prolyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 446

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 236/436 (54%), Positives = 315/436 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGR+D+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRFDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVGSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYTFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF  +P  ++ SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVMEEFTSRYARTDETHDEALFAEVPAERQRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYASLQALGLDPLYDDTKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG  E+M+ E  + 
Sbjct: 421 RRTGESEEMTPEAAVE 436


>gi|254441019|ref|ZP_05054512.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198251097|gb|EDY75412.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 453

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 236/435 (54%), Positives = 312/435 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+PRDA I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKESPRDATIVSHQYMLRAGMIKQSSAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD YG EMLR+ DRN   ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGHIAMLMPTIQSADLWRESGRYDDYGDEMLRITDRNKNDLLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY+ LP T Y IQ KFRDE RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKALPLTLYHIQWKFRDERRPRFGVMRGREFYMKDGYTFDLTKEDAMHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDAAVTDLSFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+     ++E++TA YA T + H++ LFD++P +++ +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DVTQCAEVMEEFTAKYARTDETHDQALFDAIPADRQRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA ++ +G +  +DD  E+ GS+F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQSLYAAVAALGLEALYDDRDERAGSKFGTMDMIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG  E+M  E+ I
Sbjct: 421 RKTGESEEMPPEQAI 435


>gi|56696018|ref|YP_166372.1| prolyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|81820109|sp|Q5LUD3|SYP_SILPO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56677755|gb|AAV94421.1| prolyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 238/449 (53%), Positives = 322/449 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q   GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQIVSHRLMLRAGMIKQAQAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M++GPT+EE++TDIFR 
Sbjct: 61  QIRAGHIPMLMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLFGPTNEELITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D  +     D+D
Sbjct: 181 YIRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSKVTDIRLGEREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E +F+ +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCRAVMEEFTSLYARTDETHDEAVFNQIPEERRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDGE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+++YA LS +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDQLYAALSAIGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R TG   ++S EE +   +  ++ + P L
Sbjct: 421 RKTGESVELSPEEAVKKVADIYAPHHPHL 449


>gi|163795649|ref|ZP_02189615.1| Prolyl-tRNA synthetase [alpha proteobacterium BAL199]
 gi|159179248|gb|EDP63781.1| Prolyl-tRNA synthetase [alpha proteobacterium BAL199]
          Length = 437

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/436 (55%), Positives = 315/436 (72%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YFLP +++ PRDAEI SH+LMLR GMI Q S GIYSWLPLG + L  +  ++REE
Sbjct: 1   MRLSGYFLPTMKDTPRDAEIVSHRLMLRAGMIQQASAGIYSWLPLGLRVLKKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  G  E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+D+ M++GPT+EEV+TDIFR+
Sbjct: 61  QDAAGWQEVLMPTIQSADLWRESGRYDDYGKEMLRIKDRHDRDMLFGPTNEEVITDIFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H++SY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +K +YN+ FV+
Sbjct: 121 HVRSYKALPGRLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDFEAAKRAYNRQFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RLGLK+IPM A+SGPIGGDLSHEFI+LADTGE++VFC KD++         D+D
Sbjct: 181 YLKTFDRLGLKAIPMAADSGPIGGDLSHEFIILADTGESEVFCHKDWLTSEAVPATVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  IV+   A YAAT + H+      + E   V  RGIEVGHIFYFGTKYS P+ A
Sbjct: 241 --ADLQPIVDACLARYAATDEKHDPATC-PVAEADLVRTRGIEVGHIFYFGTKYSDPLGA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYG+G  R+V  +IE+SHD  GI+WP+ VAPFK+ L+N+K  D  
Sbjct: 298 KVAGPDGKDVTVHMGSYGVGVSRLVGGIIEASHDDAGIVWPEPVAPFKVGLVNLKVGDAA 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A E +Y +L K G +V  DD  E+ G++ A  DL+G P QV+VG + +++  VE+K+
Sbjct: 358 CDSATEGLYGKLLKAGIEVLMDDRDERPGAKLAGMDLIGLPWQVVVGPRGLANGIVEMKN 417

Query: 421 RLTGIREDMSLEEVIN 436
           R TG +++M+ +  +N
Sbjct: 418 RKTGAKDEMTPDAALN 433


>gi|260430967|ref|ZP_05784938.1| prolyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414795|gb|EEX08054.1| prolyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 446

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/436 (54%), Positives = 313/436 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQAAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +P LQSADLW ESGRYD YG+EMLR+ DR+ + M+Y PT EE++TDIFR 
Sbjct: 61  QIRAGHIPIQMPILQSADLWRESGRYDDYGQEMLRMKDRHGRDMLYTPTAEELVTDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +   + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDIRLGQRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +I+E++T+ YA T + H+E LF  +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 DKAQCQAIMEEFTSLYARTDETHDEALFQQVPEERRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKQVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KIY  L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDKIYKALTALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG  E++S E  + 
Sbjct: 421 RRTGESEELSPEAAVT 436


>gi|89070126|ref|ZP_01157455.1| prolyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89044243|gb|EAR50389.1| prolyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 466

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/453 (53%), Positives = 324/453 (71%), Gaps = 5/453 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q   GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQAGAGIYSWLPLGYRVLKKIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G   + +PTLQ+A+LW ESGRYD+YG EMLR+ DR+D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHHPVLMPTLQTAELWRESGRYDAYGPEMLRIRDRHDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVASYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLRFGEREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +++ ++T+ YA T + H+E LF  +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAQCEAVMAEFTSRYARTDETHDEALFAEVPEARRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R+V A+IE++HD KGI+WP+ V PF + L+N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLVGALIEANHDDKGIVWPEGVTPFHVGLVNLKTGDGD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KIY +L+  G +V +DD  E+ G++FA  DL+G P +V VG + + +  VE+  
Sbjct: 361 ADAACQKIYDQLTACGLEVLYDDRDERAGAKFATMDLIGLPWRVTVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHRFSNNRPV 448
           R TG  E+++ + + +     YA H     RP+
Sbjct: 421 RRTGDSEEIAPDALTDRLCEIYAPHHAHVGRPM 453


>gi|83949530|ref|ZP_00958263.1| prolyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83837429|gb|EAP76725.1| prolyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 452

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/443 (54%), Positives = 321/443 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGYKVLRNIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QQRVGHIPMLMPTLQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLTFGEREIDHD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              +  +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SHEACQAVLEEFTSRYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP++VAPF + ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEAVAPFHVGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA+++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYAQVAALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++S E  I      FS
Sbjct: 421 RRTGESEELSPEAAIAKLKEHFS 443


>gi|197105248|ref|YP_002130625.1| prolyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|226701316|sp|B4RBZ9|SYP_PHEZH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|196478668|gb|ACG78196.1| prolyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 439

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 238/437 (54%), Positives = 321/437 (73%), Gaps = 3/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG K L  +  ++REE
Sbjct: 1   MRLSRYFMPTLREAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLKVLKKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ ++YGPT EEV+TDIFR+
Sbjct: 61  MDRAGAIEVLMPTLQLADLWRESGRYDDYGEEMLRIKDRHERDLLYGPTAEEVITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF +
Sbjct: 121 YIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDIDEAAARRAYNRMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL ++ RLGLK+IP+RA++GPIGGDLSHEFI+LADTGE+QVF  +D ++   P  + D+D
Sbjct: 181 YLNVYARLGLKAIPVRADTGPIGGDLSHEFIILADTGESQVFAHRDLVEMGAPGPDIDWD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  +V+Q T  YAA+ ++H++  F++  PE+KR++ARGIEVGHIFYFG KYS PM+
Sbjct: 241 G--DLEPLVQQRTRLYAASDEMHDQARFETEAPEDKRMTARGIEVGHIFYFGEKYSRPMN 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG + +V MGSYG+G  R+V A+IE+SHD  GI+WPDSVAPF  +++N++  + 
Sbjct: 299 AKVAGPDGAERFVHMGSYGVGVSRLVGAIIEASHDEAGIVWPDSVAPFGAAVVNLRPGEA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E+ Y  L   G +   DD  E+ G++FA  DL+G P Q+IVG K V++  VEIK
Sbjct: 359 AVDAVAEQAYGALQAAGKEPLLDDRDERPGAKFASLDLVGVPWQLIVGPKGVAEGVVEIK 418

Query: 420 HRLTGIREDMSLEEVIN 436
            R TG R+ + L+  + 
Sbjct: 419 RRATGERQTLPLDAALK 435


>gi|218661849|ref|ZP_03517779.1| prolyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 354

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 232/354 (65%), Positives = 293/354 (82%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS +KS
Sbjct: 1   GAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRSSVKS 60

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +YLR 
Sbjct: 61  YKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAAYLRT 120

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E TDFD +  
Sbjct: 121 FERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDERTDFDSVEG 180

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L +I E+WT+ YAATS++H+E  F+++PE+ R+SARGIEVGHIFYFGTKYS  M A  +G
Sbjct: 181 LQAIFEKWTSLYAATSEMHDEAAFNAVPESDRLSARGIEVGHIFYFGTKYSETMGAKVQG 240

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ C D 
Sbjct: 241 PDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQACDDT 300

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+
Sbjct: 301 CELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEV 354


>gi|260575893|ref|ZP_05843888.1| prolyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259021819|gb|EEW25120.1| prolyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 445

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 315/435 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFLPVLKENPAEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRQKRELLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVTSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA TGE++VF      D  + +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAATGESEVFYDSAVTDIRLGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     ++++++T+ YA T + H+E LF+++PE +R SARGIEVG IF+FGTKYS  M A
Sbjct: 241 DKAQCAAVMQEFTSLYARTDETHDESLFNAIPEERRRSARGIEVGQIFFFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    VQMGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTPDGSRVPVQMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDNG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IY  L   G D  +DD  E+ G++FA  DL+G P ++ VG + +++ KVE+  
Sbjct: 361 TDAACEAIYKALKARGLDPLYDDRDERAGAKFATMDLIGLPWRITVGPRGLANGKVELTS 420

Query: 421 RLTGIREDMSLEEVI 435
           R +G+ E+MS E+ +
Sbjct: 421 RRSGVSEEMSAEDAV 435


>gi|84501591|ref|ZP_00999763.1| prolyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
 gi|84390212|gb|EAQ02771.1| prolyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
          Length = 445

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 233/436 (53%), Positives = 317/436 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+ MLR GMI Q S GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPADAQIVSHRYMLRAGMIKQASAGIYSWLPLGYRVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD+YG EMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYDAYGPEMLRIRDRHDRDMLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E++F+ +PE++R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEEVFNRIPEDRRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQGPDGKQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y   + +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQALYDGFTALGLDPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG  E++  EE + 
Sbjct: 421 RRTGESEELPPEEAVR 436


>gi|302383072|ref|YP_003818895.1| prolyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193700|gb|ADL01272.1| prolyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 437

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/437 (55%), Positives = 322/437 (73%), Gaps = 4/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRLSRYFLPTLKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLNRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR 
Sbjct: 61  QERAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 FVKSYKALPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDIDEASARRAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFIVLADTGE+QVFC K  ++ P P  + D++
Sbjct: 181 YLNTFARMGLKAVPMRADTGPIGGDLSHEFIVLADTGESQVFCDKQLVEMPAPGADVDWN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D   L +IV+  T+ YAAT ++H+   F+S   +  R++ARGIEVGHIFYFGTKYS PM 
Sbjct: 241 D---LQAIVDGRTSLYAATEEMHDAAQFESQTADGDRLTARGIEVGHIFYFGTKYSAPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG+D  V MGSYG+G  R++ A+IE+SHD  GIIWPD+VAPF + +IN++A+D 
Sbjct: 298 AKVAGPDGQDTEVHMGSYGVGVSRLLGAIIEASHDDAGIIWPDAVAPFDVVVINLRANDP 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +ACE     L   G  V +DD  E+ G +FA ADL+G P Q+ +G K V++  VE+K
Sbjct: 358 GVCEACEAAVEALEAAGKSVLYDDTDERPGGKFATADLIGIPWQLTIGPKGVAEGVVELK 417

Query: 420 HRLTGIREDMSLEEVIN 436
            R +G +  + L++ + 
Sbjct: 418 RRASGEKSTLPLDQAME 434


>gi|126463194|ref|YP_001044308.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640237|ref|YP_002526499.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|166980147|sp|A3PMH0|SYP_RHOS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782913|sp|B9KLX3|SYP_RHOSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126104858|gb|ABN77536.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|221161018|gb|ACM01998.1| Prolyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 445

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/430 (55%), Positives = 308/430 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAVFGQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVVTADGSRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + +S  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGISAGKVELTN 420

Query: 421 RLTGIREDMS 430
           R TG  E+MS
Sbjct: 421 RRTGESEEMS 430


>gi|255262231|ref|ZP_05341573.1| prolyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255104566|gb|EET47240.1| prolyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 445

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 232/436 (53%), Positives = 314/436 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP DA+I SH+LMLR GMI Q + GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPADAQIVSHRLMLRAGMIKQSAAGIYSWLPLGYKVLKNIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + G + M +PT+QSADLW ESGRYD YG+EMLR+ DR+ + M+Y PT EE++T+IFRS
Sbjct: 61  QAKAGHMPMLMPTMQSADLWRESGRYDDYGEEMLRVTDRHGRDMLYTPTAEELITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY+++P T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDMPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + DFD
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLSFGDRDIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +I++++T  YA T + H+E +F+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVDQCAAIMQEFTTKYARTDETHDEAVFNEVPEERRRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVAVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGILNMKQGDED 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ IY   + +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 TDAACQAIYDSFAALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN 436
           R T   E+M+ E+ + 
Sbjct: 421 RRTSESEEMTAEQAVE 436


>gi|146276453|ref|YP_001166612.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|166980148|sp|A4WPJ3|SYP_RHOS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145554694|gb|ABP69307.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 445

 Score =  511 bits (1316), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/430 (54%), Positives = 310/430 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG KAL  V  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRFMLRAGMIKQQAAGIYSWLPLGFKALKRVEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDL  + + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYHVQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDFDSAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV++WT PYA T + H+E +F+++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SREECEAIVKEWTTPYARTDETHDEAIFNAIPEERRRTSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTADGARVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + ++  KVE+ +
Sbjct: 361 TDLACEALYRDLSAKGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGIAAGKVELTN 420

Query: 421 RLTGIREDMS 430
           R TG  E+MS
Sbjct: 421 RRTGESEEMS 430


>gi|77464352|ref|YP_353856.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|114152244|sp|Q3IZS9|SYP_RHOS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77388770|gb|ABA79955.1| Prolyl-tRNA synthetase, class IIa [Rhodobacter sphaeroides 2.4.1]
          Length = 445

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 238/430 (55%), Positives = 307/430 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAVFGQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVVTADGSRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + +S  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGISAGKVELTN 420

Query: 421 RLTGIREDMS 430
           R TG  E+MS
Sbjct: 421 RRTGESEEMS 430


>gi|84683507|ref|ZP_01011410.1| prolyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84668250|gb|EAQ14717.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 444

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 231/435 (53%), Positives = 313/435 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q + GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIASHRLMLRAGMIKQQAAGIYSWLPLGYKVLKNIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFR+
Sbjct: 61  QQRAGHIPILMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFFMKDGYNFDLTREDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            + +  +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEACQAVLEEFTSRYARTDETHDEALFNEIPEERRRVARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + +DG    V+MGS+GIG  R+V A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQDSDGNKVPVEMGSHGIGVSRLVGALIEANHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACETLYKALTAAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG  E+++ E  +
Sbjct: 421 RRTGESEELAPEAAV 435


>gi|288958966|ref|YP_003449307.1| prolyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911274|dbj|BAI72763.1| prolyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 437

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/435 (55%), Positives = 317/435 (72%), Gaps = 3/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+P L+E P +A+I SH+LMLR GMI Q S GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSSFFMPTLKETPTEAQIVSHRLMLRAGMIRQTSAGIYAWLPLGYRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QDAAGAQELLMPTIQSADLWRESGRYDDYGKEMLRITDRHDREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+ P G++ SY KMF++
Sbjct: 121 FVKSYRQLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDPAGARRSYQKMFLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA+TGE+ VFC KD+M   +  +    +
Sbjct: 181 YLRTFARIGLKAIPMRADTGPIGGDLSHEFIILAETGESGVFCHKDWMTLDVLKDAPGME 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L    ++ T  YAAT + H+      +P+   VSARGIEVGHIF FGTKYS PM+A
Sbjct: 241 D--DLQPFFDRVTGIYAATDEKHDPA-NSPVPDADLVSARGIEVGHIFNFGTKYSKPMNA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G +G+   V+MGSYGIG  R++ A+IE+SHD  GIIWPD+VAPF + LIN+K+ D  
Sbjct: 298 VVAGPNGESIPVEMGSYGIGVSRLMGAIIEASHDDNGIIWPDAVAPFNVGLINLKSGDAE 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++YA+L   G +V +DD  E+ G++FA  DL+G P Q++VG + +    VE+K 
Sbjct: 358 TDRVCAELYAKLEAAGLEVAYDDRDERPGAKFADMDLIGVPWQLVVGPRGLKSGVVELKR 417

Query: 421 RLTGIREDMSLEEVI 435
           R TG +E++ +E  +
Sbjct: 418 RATGEKEELPVEAAL 432


>gi|126739185|ref|ZP_01754879.1| prolyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126719802|gb|EBA16510.1| prolyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 451

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/445 (53%), Positives = 311/445 (69%), Gaps = 5/445 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ +E
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRYMLRAGMIKQSSAGIYSWLPLGFKVLKKIETIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFR 
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGEEMLRINDRHGRDMLYGPTNEELITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF  +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFKEIPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTADGGSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEKIYA LS VG +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEKIYAALSAVGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASH 440
           R TG  E+MS EE +      YA H
Sbjct: 421 RRTGESEEMSPEEAVKKVAEIYAKH 445


>gi|254466898|ref|ZP_05080309.1| prolyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206687806|gb|EDZ48288.1| prolyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 451

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 235/446 (52%), Positives = 316/446 (70%), Gaps = 5/446 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q S GIYSWLPLG K L  + +I+ +E
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGFKVLKKIESIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M + T+Q ADLW ESGRYD YG+EMLR+ DR+D+ M++GPT+EE++TDIFR+
Sbjct: 61  QIRAGHIPMLMATMQPADLWRESGRYDDYGQEMLRIKDRHDRDMLFGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQ+Q KFRDE+RPRFGVMR REF MKD Y+FDL+ E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTMYQVQWKFRDEIRPRFGVMRGREFYMKDGYNFDLSKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSESMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++YA LS  G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNQLYAALSAAGLDPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHR 441
           R TG  E++S EE +      Y  HR
Sbjct: 421 RRTGESEELSPEEAVKKVVSIYEKHR 446


>gi|332559243|ref|ZP_08413565.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
 gi|332276955|gb|EGJ22270.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
          Length = 445

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/430 (55%), Positives = 307/430 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAIFAQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   A G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVVTAGGNRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + ++  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGIAAGKVELTN 420

Query: 421 RLTGIREDMS 430
           R TG  E+MS
Sbjct: 421 RRTGESEEMS 430


>gi|163737417|ref|ZP_02144834.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161388943|gb|EDQ13295.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 451

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 235/446 (52%), Positives = 313/446 (70%), Gaps = 5/446 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR++DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGQEMLRISDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLADTGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLADTGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKQSPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACESLYEALTAAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHR 441
           R +G  E++S E  +      YA+H+
Sbjct: 421 RRSGESEELSPEAAVQKIVEIYANHQ 446


>gi|163740902|ref|ZP_02148295.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385893|gb|EDQ10269.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 451

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 235/446 (52%), Positives = 313/446 (70%), Gaps = 5/446 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR++DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGQEMLRISDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLADTGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLADTGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKQSPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACESLYEALTAAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHR 441
           R +G  E++S E  +      YA+H+
Sbjct: 421 RRSGESEELSPEAAVQKIVEIYANHQ 446


>gi|99081693|ref|YP_613847.1| prolyl-tRNA synthetase [Ruegeria sp. TM1040]
 gi|122984229|sp|Q1GFI1|SYP_SILST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|99037973|gb|ABF64585.1| prolyl-tRNA synthetase [Ruegeria sp. TM1040]
          Length = 451

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 228/445 (51%), Positives = 322/445 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A++ SH+ MLR GMI Q + GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLPLGYRVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG+EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QMRAGHIPMLMPTIQSADLWRESGRYDAYGEEMLRIRDRHDRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 NVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLTFGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++    +++E++T+ YA T + H+E LF+++PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 NVEQCQAVLEEFTSRYARTDETHDEALFNAVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + ADG+   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTADGQSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE++YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEQLYAALTAIGLEPLYDDRKERAGGKFASMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+MS E+ +   +  ++N+
Sbjct: 421 RRTGESEEMSPEDAVKKIAAIYANH 445


>gi|296536135|ref|ZP_06898264.1| proline--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263547|gb|EFH10043.1| proline--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 436

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/435 (54%), Positives = 322/435 (74%), Gaps = 5/435 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+E P +A IASHKLMLR GMI Q S GIY+WLPLG + L  V+ I+REE
Sbjct: 1   MRLSRAFLPTLKEVPAEAAIASHKLMLRAGMIRQTSAGIYAWLPLGLRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW +SGRYD YGKEMLR+ DR+++ M++GPT+EE++TD+F+S
Sbjct: 61  QDAAGAQEILMPTIQSAELWKQSGRYDDYGKEMLRITDRHEREMLFGPTNEEMVTDLFKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E ++ SY KMFV+
Sbjct: 121 YAKSYRDLPRNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDAEAARLSYKKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA+TGE+QV+  KD ++F + ++  D++
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDLSHEFIILAETGESQVYLHKDLLEFDVLAQKPDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L+  V+ WT+ YAAT ++H+E  +++L    +VSARGIEVGHIFYFG KYS  M  
Sbjct: 241 G--DLDPTVDFWTSRYAATDEMHDEAAWNALGAENQVSARGIEVGHIFYFGEKYSKAMGL 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG     QMGSYGIG  R++ A+IE++HD  GI WPD+VAPF+ +++N+K  D  
Sbjct: 299 TVAGPDGNPVIPQMGSYGIGVSRLLGALIEANHDDAGIKWPDAVAPFRCAILNLKPGDLA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EK+YA L   G D  +DD GE+ G +F  ADL G+P Q I+G +  ++  +E+K 
Sbjct: 359 TDALSEKLYAAL---GGDAVYDDRGERAGVKFNDADLAGYPWQAIIGPRGAANGIIELKR 415

Query: 421 RLTGIREDMSLEEVI 435
           R TG R+++S+E  +
Sbjct: 416 RATGERQEVSIEAAL 430


>gi|110679326|ref|YP_682333.1| prolyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|114152246|sp|Q168E6|SYP_ROSDO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109455442|gb|ABG31647.1| prolyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 451

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 236/450 (52%), Positives = 314/450 (69%), Gaps = 5/450 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YF+P+L+ENP +A+I SH+LMLR GMI Q++ GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFMPVLRENPAEAQIVSHRLMLRAGMIKQNAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QIRAGHVPMLMPTMQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFFMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H++ LF ++P  ++  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQGVMEEFTNLYARTDETHDQALFAAIPAERQRQARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKPTAVHMGSHGIGVSRLVGAIIEASHDEKGIIWPEGVTPFHCGIVNLKQGDTE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYASLRALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHRFSNN 445
           R TG   ++  EE I      YA H  S N
Sbjct: 421 RKTGESSELPPEEAIEKIAKIYAPHHVSGN 450


>gi|85704335|ref|ZP_01035438.1| prolyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85671655|gb|EAQ26513.1| prolyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 451

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/445 (54%), Positives = 316/445 (71%), Gaps = 5/445 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIASHRLMLRAGMIKQASAGIYSWLPLGFKILRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG EMLR+ DR+D+ M+YGPT+EE++TDIFR+
Sbjct: 61  QVRAGHIPVLMPTLQSADLWRESGRYDDYGAEMLRIKDRHDRDMLYGPTNEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT + + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKDDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +     D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAITDLSLGDRVVDYA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV +WT PYA T + H+  L+D++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SRAECAAIVTEWTTPYARTDETHDAALYDAIPEARRRASRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKSVPVHMGSHGIGVSRLVGAIIEANHDDKGIIWPEGVTPFHAGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IYA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE   
Sbjct: 361 ADAACEAIYASLTALGMEPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVEFTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASH 440
           R TGI E++  EE +      YA H
Sbjct: 421 RRTGISEELPPEEAVAKLVQIYAGH 445


>gi|86138530|ref|ZP_01057103.1| prolyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85824590|gb|EAQ44792.1| prolyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 451

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 232/446 (52%), Positives = 317/446 (71%), Gaps = 5/446 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSSAGIYSWLPLGFKVLKKLEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD YG+EMLR+ DR+ + M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHMPMLMPTIQSADLWRESGRYDDYGQEMLRVEDRHGRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  ++A
Sbjct: 241 NVEQCQGVLEEFTSKYARTDETHDEALFNQVPEERRRVARGIEVGQIFYFGTKYSDALNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++YA ++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNQLYAAMTALGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHR 441
           R TG  E++S E+ +      YASH+
Sbjct: 421 RRTGESEELSPEDAVKKVAAIYASHQ 446


>gi|254511426|ref|ZP_05123493.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221535137|gb|EEE38125.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 456

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/435 (53%), Positives = 312/435 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 11  MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQAAAGIYSWLPLGFKVLRKLENIVHEE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +P LQSADLW ESGRYD YG+EMLR+ DR+D+ M++ PT EE++TDIFR 
Sbjct: 71  QARAGHIAIQMPILQSADLWRESGRYDGYGQEMLRMKDRHDRDMLFTPTAEELVTDIFRG 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 131 HVSSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTMEDALHAYNRHLVS 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D      + D+D
Sbjct: 191 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDRDIDYD 250

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +     +I++++T+ YA T + H+E LFD +PE++R  ARGIEVG IFYFGT YS  M A
Sbjct: 251 NRDQCQAIMDEFTSKYARTDETHDEALFDQVPEDRRRVARGIEVGQIFYFGTNYSEAMGA 310

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 311 TVQGPDGKPVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 370

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 371 ADAACDTLYAALTALGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 430

Query: 421 RLTGIREDMSLEEVI 435
           R TG  E++S E  +
Sbjct: 431 RRTGESEELSPEAAV 445


>gi|260428562|ref|ZP_05782541.1| prolyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260423054|gb|EEX16305.1| prolyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 447

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 310/435 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLP+G K L  +  II EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRYMLRAGMIKQASAGIYSWLPMGFKVLRKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSA+LW ESGRYD+YG EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHIPMLMPTIQSAELWRESGRYDAYGAEMLRITDRHDREMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP T YQIQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVSSYRDLPLTMYQIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +++E++T+ YA T + H+E +F+ +PE +R  ARGIEVG IFYFGTKYS P+ A
Sbjct: 241 SREQCQAVLEEFTSRYARTDETHDEAVFNQVPEERRRVARGIEVGQIFYFGTKYSEPLGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVADADGNQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKTGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEKI+A L  +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEKIHAALIALGLDPLYDDTTERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG  E+M  E  +
Sbjct: 421 RRTGESEEMPPEAAV 435


>gi|149201764|ref|ZP_01878738.1| prolyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149144812|gb|EDM32841.1| prolyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 451

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/451 (53%), Positives = 320/451 (70%), Gaps = 2/451 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQASAGIYSWLPLGFKILRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG EMLR+ DR+D+ M+YGPT+EE++TDIFR+
Sbjct: 61  QVRAGHIPVLMPTLQSADLWRESGRYDDYGAEMLRIKDRHDRDMLYGPTNEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +     D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAITDLRLGGRVVDYA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV +WT PYA T + H+  L++++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SRAECEAIVTEWTTPYARTDETHDAALYEAIPEARRRASRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKSVPVHMGSHGIGVSRLIGAIIEANHDDKGIIWPEGVTPFHAGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L  +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYASLVALGMEPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN--RPVL 449
           R TGI E++  E+ +   +  ++ +  RP L
Sbjct: 421 RRTGISEELPPEQAVEKLAQIYAGHVLRPSL 451


>gi|126725673|ref|ZP_01741515.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704877|gb|EBA03968.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 470

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 230/445 (51%), Positives = 314/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP DA+I SH+LMLR GMI Q S GIYSWLPLG K L N+  I+ EE
Sbjct: 26  MRLSRYFLPVLKENPADAQIVSHRLMLRAGMIKQASAGIYSWLPLGLKVLRNIERIVHEE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + G I + +PT+QSADLW ESGRYD YG+EMLR++DR+   M+YGPT+EE +TDIFR+
Sbjct: 86  QAKAGHIPVLMPTVQSADLWRESGRYDDYGEEMLRISDRHGHDMLYGPTNEEQITDIFRA 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE RPRFGVMR REFLMKD Y+FD+  + + H+YN+  V+
Sbjct: 146 HVHSYKDLPLTLYQIQWKFRDERRPRFGVMRGREFLMKDGYNFDIDYDSAMHAYNRHMVA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GLK+IPMRA+SGPIGG+ +HEF+VLADTGE++VF   D +D        DFD
Sbjct: 206 YLRTYERMGLKAIPMRADSGPIGGEDTHEFLVLADTGESEVFYDSDILDLNFGDRVVDFD 265

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +   +V +WT PYA T + H+E L++ +PE +R S+RGIEVG IFYFGTKYS  M A
Sbjct: 266 DVSACAEVVTEWTTPYARTDETHDEALYNDIPEARRKSSRGIEVGQIFYFGTKYSDSMGA 325

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +     V MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N++  D+ 
Sbjct: 326 SVVDGEQNKVPVHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLRQGDEA 385

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +Y  L+  G +  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 386 TDGACGALYEALTAAGLEPLYDDRNERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 445

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  +++S+E  +      + N+
Sbjct: 446 RRTGESQELSIEAAVEAVVKVYENH 470


>gi|259416086|ref|ZP_05740006.1| prolyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259347525|gb|EEW59302.1| prolyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 451

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 227/445 (51%), Positives = 321/445 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A++ SH+ MLR GMI Q + GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLPLGYRVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG+EMLR+ DR+D+ M++ PT EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTIQSADLWRESGRYDAYGEEMLRIRDRHDRDMLFTPTAEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 NVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLSFGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF+++PE++R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEALFNAVPEDRRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + A+G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTAEGDSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE++YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEQLYAALTAIGLEPLYDDRKERAGGKFASMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G  E+MS E+ +   +  ++N+
Sbjct: 421 RRSGESEEMSPEDAVKKIAAIYANH 445


>gi|159043296|ref|YP_001532090.1| prolyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|189083497|sp|A8LQU6|SYP_DINSH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157911056|gb|ABV92489.1| prolyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 445

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/444 (52%), Positives = 309/444 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRLMLRAGMIKQASAGIYSWLPLGYKVLRRIEEIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDAEITDLSFGDRQIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+    +++E++T+ YA T + H+   F  +PE +R SARGIEVG IFYFGTKYS  M A
Sbjct: 241 DVGQCQAVLEEFTSRYARTDETHDPDAFAKVPEARRRSARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    D     V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVIDKDQNQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+K G +  +DD  E+ G +FA  DL+G P ++ VG + +    VE+  
Sbjct: 361 ADAACEGLYDALTKAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKAGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG  E++S E  +     R++ 
Sbjct: 421 RKTGESEELSPEAAVAKVVARYAG 444


>gi|163745976|ref|ZP_02153335.1| prolyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380721|gb|EDQ05131.1| prolyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 446

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/436 (53%), Positives = 311/436 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q S GIYSWLPLG K L  V  I+ +E
Sbjct: 1   MRLSQYFLPVLKENPAEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGYKVLRKVEEIVHQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRVGHIPMLMPTLQSADLWKESGRYDAYGPEMLRIRDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D    +   D  
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLTFGNREIDPS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  ++++++T+ YA T + H+ +LF  +PE ++ +ARGIEVG IFYFGTKYS  M+A
Sbjct: 241 DHDACRAVLDEFTSRYARTDETHDPELFAKVPEERQRTARGIEVGQIFYFGTKYSDAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L  +G D  +DD     G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYKSLKALGLDPLYDDRKGGAGMKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG  E++  E+ + 
Sbjct: 421 RRTGESEELPPEQAVE 436


>gi|114764030|ref|ZP_01443271.1| prolyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114543622|gb|EAU46636.1| prolyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 445

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/435 (53%), Positives = 310/435 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  II EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRYMLRAGMIKQASAGIYSWLPLGYKVLRKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG EMLR+ DR+D+ M+Y PT EE++TDIFR+
Sbjct: 61  QARAGHIPMLMPTIQSADLWRESGRYDAYGAEMLRITDRHDRDMLYTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVSSYRDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  +        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITELKFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E +F+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEAVFNQVPEARRRTARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVSDKDGNQVPVHMGSHGIGVSRLLGAIIEASHDDRGIIWPEGVTPFHCGIVNLKTGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KI+A L  +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDKIHAALIALGLDPLYDDTNERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG  E++  E  +
Sbjct: 421 RRTGESEELPPEAAV 435


>gi|294084092|ref|YP_003550850.1| prolyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663665|gb|ADE38766.1| prolyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 437

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/437 (53%), Positives = 320/437 (73%), Gaps = 8/437 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P++A+IASH+LMLR GM+ Q S GIYSWLPLG++ LD +  I+REE
Sbjct: 1   MRLSQYFLPLLKETPKEAQIASHRLMLRAGMVQQSSAGIYSWLPLGKRVLDKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+Q A+LW ESGRYD YG EMLR+ DR+++ M+YGPT+EE +TDIFR+
Sbjct: 61  QNRAGALEILMPTIQPAELWQESGRYDDYGAEMLRIVDRHERNMLYGPTNEEQITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H++SY+ LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFDL  + ++ +YN+MFVS
Sbjct: 121 HVRSYKALPLNMYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDLDGDKARAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F R+GL +IPM A++GPIGGD+SHEFI+LA+TGE+ V+  KD+M+  +   + D D
Sbjct: 181 YLKTFARMGLTAIPMEADTGPIGGDMSHEFIILAETGESGVYFHKDWMNINL---DADID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
               L   V+++T+ YA   D+H+    D+ P   ++ +S RGIE+GHIFYFGTKYS  M
Sbjct: 238 YNADLQPFVDKYTSLYARADDMHDA---DNCPVTADELMSLRGIEIGHIFYFGTKYSEAM 294

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT  G DGK   V MGSYGIG  R+V  +IE+SHD KGIIWPDSVAPF ++++N+K  D
Sbjct: 295 GATVSGPDGKAVPVHMGSYGIGVSRLVGGIIEASHDDKGIIWPDSVAPFGVAIVNLKPGD 354

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            VC    E++Y +    G +   DD  ++ G++ A  DL+G P Q++VG + + ++ VE+
Sbjct: 355 AVCDAEAERLYEQFDNAGLEPLLDDRNDRPGAKMASMDLIGIPWQIVVGPRGMENNMVEV 414

Query: 419 KHRLTGIREDMSLEEVI 435
           K R TG   +MS +  +
Sbjct: 415 KRRKTGETAEMSPDSAV 431


>gi|114769540|ref|ZP_01447166.1| prolyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114550457|gb|EAU53338.1| prolyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 446

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 230/432 (53%), Positives = 314/432 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+ENP DA+IASH+LMLR GMI Q   GIYSWLP+G K L  +  I+ +E
Sbjct: 1   MRLSKYFLPILKENPSDAQIASHRLMLRAGMIRQAQSGIYSWLPMGYKVLRKLENIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G   M +PT+QSADLW ESGRYD YGKEMLR+ DR+ + M++GPT+EE++TDIFR+
Sbjct: 61  QIRAGHNPMLMPTIQSADLWRESGRYDDYGKEMLRITDRHGRDMLFGPTNEELITDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + HSYN+  VS
Sbjct: 121 SVKSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLNKEAAMHSYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+G+K+IPMRA+SGPIGG+ +HEF+VLADTGE++VF  ++ +D  +  +  D++
Sbjct: 181 YLRTYERMGMKAIPMRADSGPIGGEDTHEFLVLADTGESEVFFDRNILDLSLGDKEIDYN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +     SI ++WT PYA T + HN +LF  +P+ +++++RGIEVG IFYFGTKYS  M+A
Sbjct: 241 NWDECASIFKEWTTPYARTDETHNPELFAKIPDERQMTSRGIEVGQIFYFGTKYSESMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                +  +  V MGS+GIG  R+V A+IE+SHD  GIIWP++V+PF + ++N+K  D  
Sbjct: 301 KVSTPNDGEIPVHMGSHGIGVSRMVGAIIEASHDENGIIWPEAVSPFGVGIVNLKQGDDQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y   S +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADLACENLYKSASLLGIDPLYDDRSERAGAKFASMDLIGLPWRITVGPRGLKNGVVELTC 420

Query: 421 RLTGIREDMSLE 432
           R TG+ E++  E
Sbjct: 421 RRTGVSEELPPE 432


>gi|294677986|ref|YP_003578601.1| prolyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476806|gb|ADE86194.1| prolyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 446

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/446 (52%), Positives = 311/446 (69%), Gaps = 5/446 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQIVSHRLMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ M+YGPT+EE++TDIFR+
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGQEMLRIKDRHEREMLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTREDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPMRA SGPIGGD +HEF+VLA TGE++VF      D  +     D+D
Sbjct: 181 YLRTYERMGLTAIPMRAASGPIGGDNTHEFLVLAQTGESEVFYDAQVPDLKLGDRAVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   + +I +++T  YA T + H+E +F+ +PE +R   RGIEVG IFYFGTKYS  M A
Sbjct: 241 DRDQVAAICQEFTTLYARTDETHDEAVFNQIPEARRCVGRGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V+MGS+GIG  R++ A+IE++HD +GIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTPDGTRVPVEMGSHGIGVSRLLGALIEANHDERGIIWPEGVTPFHVGIVNLKQGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  IY  L   G D  +DD  E+ G++FA  DL+G P ++ VG + ++   VE+  
Sbjct: 361 TDAACAGIYKALVAKGLDPLYDDRDERAGAKFATMDLIGLPWRITVGPRGLAGGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHR 441
           R TG  E+MS E  ++     YA+HR
Sbjct: 421 RRTGESEEMSAEAAVDRIAQIYAAHR 446


>gi|40063567|gb|AAR38356.1| prolyl-tRNA synthetase [uncultured marine bacterium 582]
          Length = 445

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 224/435 (51%), Positives = 308/435 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P+L+ENP DA+I SH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFMPVLKENPVDAQIVSHRLMLRAGMIKQSSAGIYSWLPMGFKVLKKIEDIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD++G EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHMPMLMPTIQSADLWRESGRYDAFGDEMLRIKDRHDRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SG +GGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGAMGGDNTHEFLVLAETGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  ++A
Sbjct: 241 SVAQCQGVLEEFTTKYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSEALNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T     G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D+ 
Sbjct: 301 TVDDGQGGKTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDEA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y+ L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDGLYSALTNAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVI 435
           R +G+ E+M+ E  +
Sbjct: 421 RRSGVSEEMTPEAAV 435


>gi|241761006|ref|ZP_04759095.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260753028|ref|YP_003225921.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|241374625|gb|EER64086.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552391|gb|ACV75337.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 443

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/436 (54%), Positives = 316/436 (72%), Gaps = 2/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTAAGIYAWLPLGLRVLRRIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ+ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++T + R 
Sbjct: 61  QARAGALELLMPTLQTADLWRESGRYDAYGPEMLRIKDRHNRELLYGPTNEEMITALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP  FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV+
Sbjct: 121 NLQSYRDLPRIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE+ VF   ++ + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGESDVFYHSNW-EQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT D   + L ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAAT-DEKRDPLREAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      VE+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVVELKN 418

Query: 421 RLTGIREDMSLEEVIN 436
           R +G ++ +S+E+  N
Sbjct: 419 RASGEKQTISVEDAFN 434


>gi|306841942|ref|ZP_07474620.1| prolyl-tRNA synthetase [Brucella sp. BO2]
 gi|306287975|gb|EFM59383.1| prolyl-tRNA synthetase [Brucella sp. BO2]
          Length = 400

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 227/394 (57%), Positives = 299/394 (75%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           +P+G K L+ V  IIREEQNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++
Sbjct: 1   MPIGLKVLNKVCTIIREEQNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQER 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            M++GPT+EE++TDIFRS+++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYS
Sbjct: 61  EMLFGPTNEEMVTDIFRSYVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYS 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           FDL  EG+K +Y +MFVSYLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+
Sbjct: 121 FDLDYEGAKMAYYRMFVSYLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVY 180

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  +    +VSARGI
Sbjct: 181 CDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGI 240

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP 
Sbjct: 241 EVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPK 300

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P 
Sbjct: 301 AIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPT 360

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           QVIVG + V+  +VE+K R TG R+ + ++  IN
Sbjct: 361 QVIVGPRGVAAGEVEVKDRKTGERQSLGIDAAIN 394


>gi|304319826|ref|YP_003853469.1| prolyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303298729|gb|ADM08328.1| prolyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 446

 Score =  498 bits (1282), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 229/437 (52%), Positives = 316/437 (72%), Gaps = 3/437 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ +LP+L+E P +A IASH+LMLR+GM+ Q + GIY+WLPLG K L  V AI+REE
Sbjct: 1   MKLSRTYLPLLKETPAEAVIASHRLMLRSGMVRQQAAGIYAWLPLGLKVLKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G  E+ +PT+Q A LW +SGRYD+YG EMLRL DR+ + M+YGPT+EE++T++ R+
Sbjct: 61  QERAGVAELLMPTIQPASLWHQSGRYDAYGPEMLRLKDRHGRDMLYGPTNEEMITELVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T + IQ KFRDE+RPRFGVMR REFLMKDAYSFDL+PE ++ SY + F +
Sbjct: 121 GIKSYKELPKTLFHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLSPEAARRSYLRFFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IP+RA++GPIGG LSHEF+VLA+TGE++VF +K  ++   P  + D+D
Sbjct: 181 YLRTFARLGVKAIPVRADTGPIGGKLSHEFVVLAETGESEVFTAKGLVEKTPPPTSLDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +  +WT  YAAT ++H+E  F +LPE++R+ ARGIEVGHIFYFGTKYS PM  
Sbjct: 241 G--DLEPLFAEWTGTYAATDEMHDEAAFLALPEDQRLQARGIEVGHIFYFGTKYSEPMQF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DG+  +V+MGSYGIG  R+V A+IE+ HD +G  WP  VAP+++ L+N+K     
Sbjct: 299 AVEGPDGR-AFVEMGSYGIGVSRLVGALIEAHHDDQGCRWPVPVAPYEVGLVNLKTGHDG 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++Y      G DV  DD G++ G +FA  DL+G PL V +G + V   + E+K 
Sbjct: 358 TDGACHRLYDEAVAAGLDVLLDDSGDRAGEKFARMDLIGLPLIVTIGPRGVEAGQAEVKD 417

Query: 421 RLTGIREDMSLEEVINY 437
           R TG ++++ L  +++Y
Sbjct: 418 RRTGAKQEVPLTGLVDY 434


>gi|283856263|ref|YP_162195.2| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495061|sp|P75000|SYP_ZYMMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|283775258|gb|AAV89084.2| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 443

 Score =  498 bits (1282), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/436 (54%), Positives = 314/436 (72%), Gaps = 2/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTAAGIYAWLPLGLRVLRRIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ+ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++T + R 
Sbjct: 61  QARAGALELLMPTLQTADLWRESGRYDAYGPEMLRIKDRHNRELLYGPTNEEMITALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP  FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV+
Sbjct: 121 NLQSYRDLPRIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE+ VF   ++ + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGESDVFYHSNW-EQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT D   + L ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAAT-DEKRDPLREAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      VE+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVVELKN 418

Query: 421 RLTGIREDMSLEEVIN 436
           R  G ++ +S+E   N
Sbjct: 419 RANGEKQTISVENAFN 434


>gi|310815331|ref|YP_003963295.1| prolyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754066|gb|ADO41995.1| prolyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 445

 Score =  498 bits (1282), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/433 (53%), Positives = 314/433 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q S GIY+WLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQILSHRYMLRAGMIKQESAGIYAWLPLGYKVLSRLEKIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD+YG EMLR+ DRN + M++GPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYDAYGPEMLRMTDRNKREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFLMKDGYNFDLTREDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPMRA+SGPIGGD +HEF+VLA+TGE++VF  +D     +     ++D
Sbjct: 181 YLRTYERMGLTAIPMRADSGPIGGDDTHEFLVLANTGESEVFYDEDVTRLKLGERAINYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   + +I +++T PYA T + H+  LFD++PE +R   RGIEVG IFYFGTKYS PM A
Sbjct: 241 NREEVAAICQEFTTPYARTDETHDAALFDAIPEGRRKVGRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + A+GK   V+MGS+GIG  R++ A+IE++HD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQNAEGKQVPVEMGSHGIGVSRLIGALIEANHDDKGIIWPEGVTPFHVGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE ++     +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALHDSFVALGLDPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEE 433
           R TG+ E++  EE
Sbjct: 421 RRTGVSEELPPEE 433


>gi|254474756|ref|ZP_05088142.1| prolyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214028999|gb|EEB69834.1| prolyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 450

 Score =  498 bits (1282), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 230/446 (51%), Positives = 312/446 (69%), Gaps = 6/446 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M + T+Q ADLW ESGRYD YG+EMLR+ DR+D+ M++GPT+EE++TDIFR+
Sbjct: 61  QMRAGHIPMLMSTMQPADLWRESGRYDDYGQEMLRIKDRHDRDMLFGPTNEEMITDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQ+Q KFRDE+RPRFGVMR REF MKD Y+FDL+ E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTMYQVQWKFRDEIRPRFGVMRGREFYMKDGYNFDLSKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE++R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEIPEDRRRVARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG+   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D+ 
Sbjct: 301 KVQTPDGEVP-VHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDEA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L   G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 360 ADGACEDLYKALVAAGLDPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 419

Query: 421 RLTGIREDMSLEEVIN-----YASHR 441
           R TG  E+++ E  +      YA+HR
Sbjct: 420 RRTGESEELAPEAAVAKIIEIYANHR 445


>gi|163733470|ref|ZP_02140913.1| prolyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161393258|gb|EDQ17584.1| prolyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 451

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/450 (51%), Positives = 315/450 (70%), Gaps = 5/450 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YF+P+L+ENP +A+I SH+LMLR GMI Q++ GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFMPVLRENPAEAQIVSHRLMLRAGMIKQNAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QIRAGHVPMLMPTMQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFFMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H++ LFD++P  ++  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVAQCQGVMEEFTNLYARTDETHDQALFDAIPAERQRKARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKPTAVHMGSHGIGVSRLVGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYTSLRALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVIN-----YASHRFSNN 445
           R +G   +M  E+ +      YA+H  + N
Sbjct: 421 RKSGESVEMPPEQAVEKIASIYATHHVTGN 450


>gi|126728909|ref|ZP_01744724.1| prolyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710839|gb|EBA09890.1| prolyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 445

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/445 (52%), Positives = 315/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q   GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRLMLRAGMIKQAQAGIYSWLPLGYKVLKKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRY++YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYEAYGEEMLRITDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    + + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGTRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    S++E++T+ YA T + H+E LF  +PE +R +ARGIEVG IFYFGTKYS  M+A
Sbjct: 241 SVEECQSVLEEFTSRYARTDETHDEALFGEIPEERRRTARGIEVGQIFYFGTKYSDAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +   G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   +IN+K  D  
Sbjct: 301 VVQDHSGAQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIINLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IY  L K G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEAIYLDLVKSGLEPLYDDTDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+M  E+ +      ++N+
Sbjct: 421 RRTGESEEMPPEQAVERIRQIYANH 445


>gi|126735142|ref|ZP_01750888.1| prolyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126715697|gb|EBA12562.1| prolyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 446

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 226/435 (51%), Positives = 311/435 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E PR+A+I SH+ ML+ GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPREAQIVSHRYMLQAGMIKQASAGIYSWLPLGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PT+QSADLW ESGRYD+YG+EMLR+ DR  + M++ PT EE++TDIFR+
Sbjct: 61  QARAGHIAIQMPTIQSADLWRESGRYDAYGEEMLRIKDRGGRDMLFTPTAEELVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYQIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLKFGDRQIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  +++E++T+ YA T + H+E LFD++PE ++ +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DKAACQAVLEEFTSRYARTDETHDEALFDAIPEERKRTARGIEVGQIFYFGTKYSESMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+++ D  
Sbjct: 301 LVDDGQGGKVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGILNMRSGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L+ +G +  +DD  E+ G++F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYASLTALGLEPLYDDRDERAGAKFGTMDMIGLPWRITVGPRGLKNGVVEVTC 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG  E+M  E+ +
Sbjct: 421 RRTGESEEMPPEDAV 435


>gi|148555262|ref|YP_001262844.1| prolyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|166980160|sp|A5V8U0|SYP_SPHWW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148500452|gb|ABQ68706.1| prolyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 437

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/435 (54%), Positives = 320/435 (73%), Gaps = 3/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP+++E+P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRHFLPVMKESPADAQIVSHKLMLRAGMIRQTAAGIYAWLPLGHRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+QSADLW ESGRYD+YG EMLR+ DR+D+ M++GPT+EE++T IFR 
Sbjct: 61  QDRAGAIELLMPTMQSADLWRESGRYDAYGPEMLRIKDRHDREMLFGPTNEEMITAIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + +SYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  EG++HSYN+MFV+
Sbjct: 121 NARSYRDLPRILYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDIEGARHSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM+A++GPIGGDLSHEFIVLA TGE++VF   ++      + + D D
Sbjct: 181 YLRTFRRMGLSAIPMQADTGPIGGDLSHEFIVLAPTGESEVFYHTNWE--VERALDVDVD 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L   V+  TA YAAT D   +   ++   +    +RGIEVGHIFYFGTKYS  M  
Sbjct: 239 DVAALQGFVDGLTADYAAT-DEKRDPAREAAAGDSLKQSRGIEVGHIFYFGTKYSAAMGM 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+    QMGSYGIG  R++ A+IE+SHD  GI+WPD+VAP+ + LIN++A D  
Sbjct: 298 TVQGPDGQPVTPQMGSYGIGVSRLMGAIIEASHDDAGIVWPDAVAPYTVGLINMRADDAR 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A + +YA+L   G +  +DD  E+ G++FA  DL+G P Q++VG K +    VE+K 
Sbjct: 358 CAAAADDLYAKLEAAGIETLYDDRDERGGAKFATMDLIGLPWQIVVGPKGLDKGVVELKR 417

Query: 421 RLTGIREDMSLEEVI 435
           R TG + ++S+E+ I
Sbjct: 418 RATGEKVELSVEDAI 432


>gi|149914370|ref|ZP_01902901.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149811889|gb|EDM71722.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 455

 Score =  491 bits (1265), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/450 (52%), Positives = 316/450 (70%), Gaps = 6/450 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQASAGIYSWLPMGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R   + M +PTLQ ADLW ESGRYD YG+EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QIRARHVPMLMPTLQPADLWRESGRYDDYGEEMLRIKDRQGRDLLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFFMKDGYNFDLTREDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRAESGPIGGD +HEF+VLA+TGE+ VF   +  D        D+ 
Sbjct: 181 YLRTYERMGLQAIPMRAESGPIGGDDTHEFLVLAETGESGVFYDSEITDLRFGDREIDYT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            + +  +++E++T+ YA T D H+E +F D +PE +R S RGIEVG IFYFGTKYS PM 
Sbjct: 241 SVEACQAVMEEFTSRYARTDDTHDESVFHDRVPEERRRSGRGIEVGQIFYFGTKYSEPMG 300

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           AT +  DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF   ++N+K  D 
Sbjct: 301 ATVQDRDGNTVPVHMGSHGIGVSRLIGAIIEASHDDRGIIWPEGVTPFHAGIVNLKTGDA 360

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE IYA L+ +G +  +DD  ++ G++FA  DL+G P ++ VG + + +  VE+ 
Sbjct: 361 EADAACEAIYASLTALGLEPLYDDTDDRAGAKFATMDLIGLPWRITVGPRGLKNGVVELT 420

Query: 420 HRLTGIREDMSLEEVIN-----YASHRFSN 444
            R TG  E++  E+ +      YA+HR  +
Sbjct: 421 SRRTGESEELPPEQAVEKLARIYAAHRIGS 450


>gi|254463517|ref|ZP_05076933.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206680106|gb|EDZ44593.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 445

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/435 (53%), Positives = 308/435 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP DA+I SH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKENPADAQIVSHRLMLRAGMIKQSSAGIYSWLPMGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW +SGRYD+YG EMLR+ DR+D+ M+YGPT+EE++TD+  +
Sbjct: 61  QQRAGHIPMLMPTLQSADLWRKSGRYDAYGPEMLRIKDRHDREMLYGPTNEELITDMVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 FVGSYKSLPLTLYHVQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF   +  D        DFD
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLADTGESEVFYDSEITDLSFGDRTIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  S++E++T+ YA T + H E  F+ LPE +R  ARGIEVG IFYFGT+YS  M A
Sbjct: 241 DKAACQSVMEEFTSRYARTDETHEEAAFNELPEERRRVARGIEVGQIFYFGTEYSEKMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG+   + MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N+K  D  
Sbjct: 301 MVQNEDGQRVPLHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L+ +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYDSLTALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVI 435
           R TG  E+M+ E  I
Sbjct: 421 RRTGESEEMTPELAI 435


>gi|84515335|ref|ZP_01002697.1| prolyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84510618|gb|EAQ07073.1| prolyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 446

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 220/429 (51%), Positives = 302/429 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E PR+A+I SH+ ML+ GMI Q S GIYSWLPLG K L  +  I+ +E
Sbjct: 1   MRLSRYFLPVLKETPREAQIVSHRYMLQAGMIKQASAGIYSWLPLGFKVLRKIENIVHQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PT+QSADLW ESGRYD+YG+EMLR+ DR  + M++ PT EE++TDIFR+
Sbjct: 61  QERAGHIAIQMPTIQSADLWRESGRYDAYGEEMLRIKDRGGREMLFTPTAEELVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVTSYKDLPLTLYQIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D        D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSQITDLKFGDRQIDYS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  ++++++T+ YA T + H+  LF+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DHAACAAVLDEFTSRYARTDETHDAALFNQVPEERRRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 LVDDGKGGKVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L+ +G +  +DD  E+ G++F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQALYDSLTALGLEPLYDDRDERAGTKFGTMDMIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDM 429
           R TG  E++
Sbjct: 421 RRTGESEEL 429


>gi|695786|emb|CAA58846.1| orf5 [Zymomonas mobilis]
          Length = 443

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/436 (53%), Positives = 307/436 (70%), Gaps = 2/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L     IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTASGIYAWLPLGLRVLGRNEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA E+ +PTLQ+ADLW ESGRYD+YG EMLR  DR++  ++YGPT+EE++T + R 
Sbjct: 61  QARAGAAELLMPTLQTADLWPESGRYDAYGPEMLRFKDRHNCELLYGPTNEEMITALIRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY  L   FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV 
Sbjct: 121 NLQSYAILAGIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVG 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE  VF   ++ + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGERHVFYHSNW-EQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT D   + L ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAAT-DEKRDPLREAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      +E+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVIELKN 418

Query: 421 RLTGIREDMSLEEVIN 436
           R +G ++ +S+E+  N
Sbjct: 419 RASGEKQTISVEDAFN 434


>gi|329114694|ref|ZP_08243453.1| Prolyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696174|gb|EGE47856.1| Prolyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 459

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/440 (50%), Positives = 314/440 (71%), Gaps = 13/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q + GIY+WLP G K L N++ I+REE
Sbjct: 22  MRLSRSFLPTLKENPAEAQIVSHRLMLRAGLIRQTASGIYAWLPAGLKVLRNISQIVREE 81

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PTLQSADLW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TD+F  
Sbjct: 82  QDRVGAQEVLMPTLQSADLWKRSGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITDLFGQ 141

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  +Y +M ++
Sbjct: 142 TVKSYKDLPQVLYHIQWKFRDEMRPRFGVMRGREFLMKDAYSFDLDYESAVATYRRMLLA 201

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-----SKDFMDFPIPSE 235
           YLR F RLG++++PMRA++GPIGG+LSHEF++LA TGE+ VF       +D++D P+   
Sbjct: 202 YLRTFQRLGVRAVPMRADTGPIGGELSHEFLILAPTGESGVFYDAALEEQDWLDEPV--- 258

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D +  I+L +   + T PYAAT ++H+E  + ++P  ++   RG+EVGHIFYFG KY+
Sbjct: 259 --DTNSPIALEAFFNRVTTPYAATDEMHDEAGWQAVPAERQREGRGVEVGHIFYFGDKYT 316

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
             M  +  G DG   Y +MGSYGIG  R+  A+IE+ HD  GIIWPD+VAPF+  ++N+K
Sbjct: 317 RSMDVSVSGPDGNQLYPEMGSYGIGVSRLAGAIIEACHDDNGIIWPDAVAPFRAVILNLK 376

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D++C   CE+IY+   +      +DD  E+ G +FA ADL+G P Q++VG +   + K
Sbjct: 377 NGDELCDAICERIYSTNEEA---FLYDDRAERAGVKFADADLMGHPWQIVVGPRGAKEGK 433

Query: 416 VEIKHRLTGIREDMSLEEVI 435
           VE+K R TG R ++S+++ +
Sbjct: 434 VELKRRATGERHEVSVDDAL 453


>gi|258542706|ref|YP_003188139.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633784|dbj|BAH99759.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636843|dbj|BAI02812.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639896|dbj|BAI05858.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642952|dbj|BAI08907.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646007|dbj|BAI11955.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649060|dbj|BAI15001.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652047|dbj|BAI17981.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655104|dbj|BAI21031.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 438

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/440 (50%), Positives = 314/440 (71%), Gaps = 13/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q + GIY+WLP G K L N++ I+REE
Sbjct: 1   MRLSRSFLPTLKENPAEAQIVSHRLMLRAGLIRQTASGIYAWLPAGLKVLRNISQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PTLQSADLW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TD+F  
Sbjct: 61  QDRVGAQEVLMPTLQSADLWKRSGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  +Y +M ++
Sbjct: 121 TVKSYKDLPQVLYHIQWKFRDEMRPRFGVMRGREFLMKDAYSFDLDYESAVATYRRMLLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-----SKDFMDFPIPSE 235
           YLR F RLG++++PMRA++GPIGG+LSHEF++LA TGE+ VF       +D++D P+   
Sbjct: 181 YLRTFQRLGVRAVPMRADTGPIGGELSHEFLILAPTGESGVFYDAALEEQDWLDEPV--- 237

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D +  ++L +   + T PYAAT ++H+E  + ++P  ++   RG+EVGHIFYFG KY+
Sbjct: 238 --DTNSPVALEAFFNRVTTPYAATDEMHDEAGWQAVPAERQREGRGVEVGHIFYFGDKYT 295

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
             M  +  G DG   Y +MGSYGIG  R+  A+IE+ HD  GIIWPD+VAPF+  ++N+K
Sbjct: 296 RSMDVSVSGPDGNQLYPEMGSYGIGVSRLAGAIIEACHDDNGIIWPDAVAPFRAVILNLK 355

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D++C   CE+IY+   +      +DD  E+ G +FA ADL+G P Q++VG +   + K
Sbjct: 356 NGDELCDAICERIYSTNEEA---FLYDDRAERAGVKFADADLMGHPWQIVVGPRGAKEGK 412

Query: 416 VEIKHRLTGIREDMSLEEVI 435
           VE+K R TG R ++S+++ +
Sbjct: 413 VELKRRATGERHEVSVDDAL 432


>gi|148259950|ref|YP_001234077.1| prolyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|326403096|ref|YP_004283177.1| prolyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|166980092|sp|A5FX26|SYP_ACICJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146401631|gb|ABQ30158.1| prolyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|325049957|dbj|BAJ80295.1| prolyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 437

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 222/435 (51%), Positives = 308/435 (70%), Gaps = 3/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+I SH+LMLR G+I Q S GIY+WLP G + L N+  I+REE
Sbjct: 1   MRLSRSLIPTLKETPAEAQIVSHRLMLRAGLIRQQSAGIYAWLPAGLRVLHNIANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G+ E+ +PT+QSA+LW ESGRYD+YG EMLR+ DR+D+ M+YGPT+EE++T I R 
Sbjct: 61  QARAGSQEILMPTIQSAELWRESGRYDAYGPEMLRIRDRHDREMLYGPTNEEMLTAIMRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   YQIQ KFRDE+RPRFGV+R REF MKD YSFDL  EG+  SY +M ++
Sbjct: 121 SVQSYRDLPQMLYQIQWKFRDEVRPRFGVLRGREFYMKDGYSFDLDYEGAVESYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F R+G++++PMRA++GPIGG+LSHEF +LA TGE+ VF    F    +  +  D++
Sbjct: 181 YMRTFKRMGVRAVPMRADTGPIGGNLSHEFHILAPTGESGVFYDSSFETIELGDDAYDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L++  ++ T+ YAAT + H+E  +  +PE++R   RGIEVG IFYFGTKYS  M+ 
Sbjct: 241 ARADLDAFFDRMTSLYAATDEKHDEAAWAKVPEDRRREGRGIEVGQIFYFGTKYSQAMNF 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   + +MGSYGIG  R+  A+IE+SHD  GIIWPD++APF+ S++N++  DQV
Sbjct: 301 TVVGPDGARLHPEMGSYGIGVSRLTGAIIEASHDEAGIIWPDAIAPFRASILNLRQGDQV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE+IY     +G D  +DD   + G +FA ADL+G P QVIVG +  +  +VE+KH
Sbjct: 361 TDALCERIY---DALGRDALYDDREARAGEKFADADLMGHPWQVIVGPRGAAKGQVELKH 417

Query: 421 RLTGIREDMSLEEVI 435
           R TG R ++ +E  +
Sbjct: 418 RRTGERAELDIESAL 432


>gi|162139874|ref|YP_745105.2| prolyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|148887022|sp|Q0BSM0|SYP_GRABC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 440

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/435 (51%), Positives = 308/435 (70%), Gaps = 2/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+IASH+LMLR G+I Q + GIY+WLP G + L+ +  I+R+E
Sbjct: 1   MRLSRALIPTLKETPAEAQIASHRLMLRAGLIQQEAAGIYAWLPAGLRVLNAIANIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   GA E+ +PT+QSADLW ESGRYD+YG EMLRL DR+++ ++YGPT+EEV+TDI+R 
Sbjct: 61  QAGIGAQEVLMPTIQSADLWRESGRYDAYGPEMLRLKDRHERDLLYGPTNEEVITDIYRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDL   G+  SY ++ +S
Sbjct: 121 SVKSYRELPQMAYQIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDYAGAVRSYRRIMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F RLG+K+IPM A++GPIGGDLSHEFI+LA TGE++VF    F +      + + D
Sbjct: 181 YMRTFQRLGVKAIPMLADTGPIGGDLSHEFIILAPTGESEVFYDAAFEEIDWSGASFNVD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L    +  T  YAAT + H+   +++LPE +R + RGIEVGHIFYFGTKYS  ++ 
Sbjct: 241 SDADLERFFQTITGHYAATDEKHDTAAYEALPEARRRTGRGIEVGHIFYFGTKYSKALNM 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG+  + +MGSYGIG  R+VAAVIE+SHD  GIIWPDS+APF+ +++N+K  D  
Sbjct: 301 TVAGRDGQKLHPEMGSYGIGVSRMVAAVIEASHDEAGIIWPDSIAPFRAAVLNLKNGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E +Y R+        +DD  E+ G +FA ADL+G P QV++G +  +  +VE+K 
Sbjct: 361 CDAMAEDVYRRIGV--RHALYDDRDERAGVKFADADLMGHPWQVVIGPRGAAAGRVELKR 418

Query: 421 RLTGIREDMSLEEVI 435
           R TG R ++++E+ +
Sbjct: 419 RRTGERVELTVEDAL 433


>gi|89053551|ref|YP_509002.1| prolyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|114152201|sp|Q28TI5|SYP_JANSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88863100|gb|ABD53977.1| prolyl-tRNA synthetase [Jannaschia sp. CCS1]
          Length = 452

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/448 (49%), Positives = 315/448 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRLMLRAGMIKQASAGIYSWLPLGYKVLKRIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW +SGR+D+YG EMLRL DR+D+ M+YGPT+EE++TD+  +
Sbjct: 61  QIRAGHIPMLMPTLQSADLWQKSGRFDAYGPEMLRLKDRHDRDMLYGPTNEEMITDMVGT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 FVTSYKSLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLADTGESEVFYDAEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+   +++++++T+ YA T + H+E  F ++P +++ SARGIEVG IFYFGT+YS  + A
Sbjct: 241 DVAQCDAVLQEFTSRYARTDETHDEAEFAAIPGDRQRSARGIEVGQIFYFGTEYSEKLGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  +G+   + MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 HVQNDEGERVPLHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +   L   G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALETALENAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R TG  E+++ +  +   +  ++ ++PV
Sbjct: 421 RRTGESEELTPDAAVARVAEVYAAHKPV 448


>gi|144899844|emb|CAM76708.1| prolyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 429

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/435 (52%), Positives = 308/435 (70%), Gaps = 11/435 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP L+E P +A+IASH+LMLR GMI Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPTLKETPSEAQIASHRLMLRAGMIRQSASGIYTWLPLGWKVLQKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSAD+W ESGRYD+YGKEMLR+ DR+D+ M++GPT+EE++T IFR 
Sbjct: 61  QDAAGAQELLMPTIQSADIWRESGRYDAYGKEMLRIVDRHDREMLFGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKD+YSFD+  +G+K SY  MF +
Sbjct: 121 NVKSYRELPKILYHIQWKFRDEVRPRFGVMRGREFLMKDSYSFDIDFDGAKRSYEAMFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM A+SG IGG+L+HEF VLA+TGE+ VF       + +  E     
Sbjct: 181 YLRTFKRMGLTAIPMVADSGAIGGNLTHEFHVLAETGESGVF-------YDVAYEELAAK 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L ++    +  YA T + H+    +  P ++   ARGIEVGHIFYFGTKYS  M A
Sbjct: 234 DAVDLEAL----SKLYAVTDEKHDPNSPECPPADRLKVARGIEVGHIFYFGTKYSKAMGA 289

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   +V+MGSYGIG  R+V A+IE+ HD +GI WP++VAPFK+ LIN+KA D  
Sbjct: 290 VVAGPDGNPVHVEMGSYGIGVSRLVGAIIEAYHDDRGIKWPEAVAPFKVGLINLKAGDGA 349

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  LS+ G +V +DD  ++ G +FA  DL+G P Q++ G K V+   VE+K+
Sbjct: 350 CDRVCEDMYRALSEQGVEVLYDDRDDRAGVKFADMDLIGLPWQLVAGPKGVAAGLVELKN 409

Query: 421 RLTGIREDMSLEEVI 435
           R TG ++++S+E  +
Sbjct: 410 RHTGEKQELSVEAAL 424


>gi|209545456|ref|YP_002277685.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533133|gb|ACI53070.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 438

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/435 (52%), Positives = 308/435 (70%), Gaps = 3/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A++ SH+LMLR G+I Q + GIY+WLP G + L N+  I+REE
Sbjct: 1   MRLSRGFLPTLKENPAEAQVISHRLMLRAGLIRQTAAGIYAWLPAGWRVLQNIARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 61  QDAIGAQELLMPTVQSAELWKRSGRYDAYGPEMLRIQDRHERELLYGPTNEEMITDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL    +  SY +M ++
Sbjct: 121 VVKSYRELPQVLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDYASAVDSYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPM A++GPIGG+LSHEF++LA TGE+ VF    F +    S+  D D
Sbjct: 181 YLRTFQRLGVRAIPMVADTGPIGGELSHEFLILAPTGESGVFFDGAFEEQDWLSDPVDID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL++   + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 241 DRESLDAFFTRMTSFYAATDEKHDEAAWADVPAERRREGRGIEVGHIFHFGRKYTESMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   Y +MGSYGIG  R+VAA+IE+SHD  GIIWPDSVAPF+ +++N+K  D  
Sbjct: 301 TVSGPDGAPLYPEMGSYGIGVSRLVAAIIEASHDDNGIIWPDSVAPFRAAILNLKTGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA   +      +DD GE+ G +FA ADL+G P QVIVG +   + KVE+K 
Sbjct: 361 CDAICEQVYAAAPE---SFLYDDRGERAGVKFADADLMGHPWQVIVGPRGAKEGKVELKR 417

Query: 421 RLTGIREDMSLEEVI 435
           R  G R ++S+++ +
Sbjct: 418 RADGARFELSVDDAL 432


>gi|114316122|gb|ABI62182.1| prolyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 499

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/435 (51%), Positives = 308/435 (70%), Gaps = 2/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+IASH+LMLR G+I Q + GIY+WLP G + L+ +  I+R+E
Sbjct: 60  MRLSRALIPTLKETPAEAQIASHRLMLRAGLIQQEAAGIYAWLPAGLRVLNAIANIVRDE 119

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   GA E+ +PT+QSADLW ESGRYD+YG EMLRL DR+++ ++YGPT+EEV+TDI+R 
Sbjct: 120 QAGIGAQEVLMPTIQSADLWRESGRYDAYGPEMLRLKDRHERDLLYGPTNEEVITDIYRH 179

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDL   G+  SY ++ +S
Sbjct: 180 SVKSYRELPQMAYQIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDYAGAVRSYRRIMLS 239

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F RLG+K+IPM A++GPIGGDLSHEFI+LA TGE++VF    F +      + + D
Sbjct: 240 YMRTFQRLGVKAIPMLADTGPIGGDLSHEFIILAPTGESEVFYDAAFEEIDWSGASFNVD 299

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L    +  T  YAAT + H+   +++LPE +R + RGIEVGHIFYFGTKYS  ++ 
Sbjct: 300 SDADLERFFQTITGHYAATDEKHDTAAYEALPEARRRTGRGIEVGHIFYFGTKYSKALNM 359

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG+  + +MGSYGIG  R+VAAVIE+SHD  GIIWPDS+APF+ +++N+K  D  
Sbjct: 360 TVAGRDGQKLHPEMGSYGIGVSRMVAAVIEASHDEAGIIWPDSIAPFRAAVLNLKNGDAA 419

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E +Y R+        +DD  E+ G +FA ADL+G P QV++G +  +  +VE+K 
Sbjct: 420 CDAMAEDVYRRIGVR--HALYDDRDERAGVKFADADLMGHPWQVVIGPRGAAAGRVELKR 477

Query: 421 RLTGIREDMSLEEVI 435
           R TG R ++++E+ +
Sbjct: 478 RRTGERVELTVEDAL 492


>gi|162148795|ref|YP_001603256.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787372|emb|CAP56967.1| Prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 476

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/435 (52%), Positives = 308/435 (70%), Gaps = 3/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A++ SH+LMLR G+I Q + GIY+WLP G + L N+  I+REE
Sbjct: 39  MRLSRGFLPTLKENPAEAQVISHRLMLRAGLIRQTAAGIYAWLPAGWRVLQNIARIVREE 98

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 99  QDAIGAQELLMPTVQSAELWKRSGRYDAYGPEMLRIQDRHERELLYGPTNEEMITDLFGQ 158

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL    +  SY +M ++
Sbjct: 159 VVKSYRELPQVLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDYASAVDSYRRMMLA 218

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPM A++GPIGG+LSHEF++LA TGE+ VF    F +    S+  D D
Sbjct: 219 YLRTFQRLGVRAIPMVADTGPIGGELSHEFLILAPTGESGVFFDGAFEEQDWLSDPVDID 278

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL++   + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 279 DRESLDAFFTRMTSFYAATDEKHDEAAWADVPAERRREGRGIEVGHIFHFGRKYTESMDI 338

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   Y +MGSYGIG  R+VAA+IE+SHD  GIIWPDSVAPF+ +++N+K  D  
Sbjct: 339 TVSGPDGAPLYPEMGSYGIGVSRLVAAIIEASHDDNGIIWPDSVAPFRAAILNLKTGDAA 398

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA   +      +DD GE+ G +FA ADL+G P QVIVG +   + KVE+K 
Sbjct: 399 CDAICEQVYAAAPE---SFLYDDRGERAGVKFADADLMGHPWQVIVGPRGAKEGKVELKR 455

Query: 421 RLTGIREDMSLEEVI 435
           R  G R ++S+++ +
Sbjct: 456 RADGARFELSVDDAL 470


>gi|209964526|ref|YP_002297441.1| prolyl-tRNA synthetase [Rhodospirillum centenum SW]
 gi|209957992|gb|ACI98628.1| prolyl-tRNA synthetase ProS [Rhodospirillum centenum SW]
          Length = 404

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/405 (55%), Positives = 301/405 (74%), Gaps = 6/405 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI Q S GIY+WLPLG + L  V  I+REEQ+R GA EM +PT+QSADLW +SGRY++YG
Sbjct: 1   MIRQTSAGIYAWLPLGWRVLQKVAQIVREEQDRAGAQEMLMPTIQSADLWKQSGRYEAYG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEMLR+ DR+D+ M+YGPT+EE++TDIF++ +KSY++LP   Y IQ KFRDE+RPRFG+M
Sbjct: 61  KEMLRITDRHDREMLYGPTNEEMITDIFKTFVKSYKDLPKNLYHIQWKFRDEIRPRFGLM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REFLMKD YSFDL  EG+K SY +MF++YLR F R+G+K+IPMRA++GPIGGDLSHEF
Sbjct: 121 RGREFLMKDNYSFDLDVEGAKLSYRRMFLAYLRTFARMGIKAIPMRADTGPIGGDLSHEF 180

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+LA+TGE+QVFC + +++  + +E    D    L    +++T+ YAAT ++H+      
Sbjct: 181 IILAETGESQVFCDRRWLELDVLAEAPAPDS--DLKEFFDRYTSIYAATEEMHDAA---K 235

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P +  V+ARGIEVGHIFYFG KYS PM A   G DG+   V+MGSYGIG  RVVAA+IE
Sbjct: 236 APAD-LVTARGIEVGHIFYFGKKYSQPMEAIVAGPDGQPVTVEMGSYGIGVSRVVAAIIE 294

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD +GIIWP+ VAPFK++++N+K  D  C   CE +YARLS    +V +DD  E+ G+
Sbjct: 295 ASHDEQGIIWPEPVAPFKLAIVNLKVDDAECSRVCEDLYARLSGAKVEVLYDDRNERPGA 354

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +FA  DL+G P Q+ VG + +    VE+K R TG + ++S+E+ +
Sbjct: 355 KFADMDLIGVPWQLTVGPRGLKAGVVELKRRATGEKFELSVEDAL 399


>gi|330994071|ref|ZP_08318001.1| Prolyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329759017|gb|EGG75531.1| Prolyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 440

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/435 (51%), Positives = 303/435 (69%), Gaps = 3/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR GMI Q + GIY+WLP G + L N+  I+R E
Sbjct: 1   MRLSRSFLPTLKENPTEAQITSHRLMLRAGMIRQTAAGIYAWLPTGLRVLRNIANIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ M++GPT+EE++TD+F  
Sbjct: 61  QDAIGAQELLMPTMQSAELWKRSGRYDAYGPEMLRIQDRHERDMLFGPTNEEMVTDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFDL    +  +Y +M +S
Sbjct: 121 AIKSYKELPQVLYQIQWKFRDEVRPRFGVMRGREFYMKDAYSFDLDHAAAVDTYRRMMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPMRA++GPIGG+LSHEF++LA TGE+ VF      +     E  D +
Sbjct: 181 YLRTFQRLGVRAIPMRADTGPIGGELSHEFLILAPTGESGVFFDSALEEQDWVGETIDVN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L +     T+ YAAT ++H+E  +  +P  +R   RGIEVGHIF FG KY+  M  
Sbjct: 241 DRDALGAFFTSLTSFYAATDEMHDEAAWAKVPAERRREGRGIEVGHIFNFGRKYTQSMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   + +MGSYGIG  R+VAA+IE+SHD  GIIWP+SVAPF+  +IN+K  D  
Sbjct: 301 AVSGPDGAPLHPEMGSYGIGVSRLVAAIIEASHDENGIIWPESVAPFRAVIINLKNGDAQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CEK+YA       D+ +DD  E+ G++FA ADLLG P Q+IVG +   + KVE+K+
Sbjct: 361 CDAICEKLYAAAPD---DLLYDDRAERAGAKFADADLLGHPWQLIVGPRGAKEGKVEVKN 417

Query: 421 RLTGIREDMSLEEVI 435
           R TG R + +++  +
Sbjct: 418 RRTGERTEETVDAAL 432


>gi|254453587|ref|ZP_05067024.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198267993|gb|EDY92263.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 428

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 288/410 (70%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI Q S GIYSWLPLG K L  +  I+ EEQ R G I + +PT+QSADLW ESGR
Sbjct: 1   MLRAGMIKQSSAGIYSWLPLGFKVLKRIEQIVHEEQERAGHIAIQMPTIQSADLWRESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y++YG EMLR+ DRN   +++ PT EE++TDIFRSH+ SY++LP T YQIQ KFRDE RP
Sbjct: 61  YEAYGDEMLRIKDRNGNDLLFTPTAEELVTDIFRSHVASYKSLPMTLYQIQWKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR REF MKD Y+FDLT E + H+YN+  VSYLR + R+GL++IPMRA SGPIGGD
Sbjct: 121 RFGVMRGREFYMKDGYTFDLTKEDAMHAYNRHLVSYLRTYERMGLQAIPMRAASGPIGGD 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +HEF+VLADTGE++VF      +    +   D+DD+     ++E++T  YA T + H+ 
Sbjct: 181 DTHEFLVLADTGESEVFYDAAVTELSFGNREIDYDDVAQCADVMEEFTTKYARTDETHDP 240

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            LFD++P +++ +ARGIEVG IFYFGTKYS  M AT +G DGK   V MGS+GIG  R++
Sbjct: 241 ALFDAIPADRQRTARGIEVGQIFYFGTKYSDAMGATVQGPDGKPTAVHMGSHGIGVSRLL 300

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+IE+SHD KGIIWP+ V PF + ++N+K  D     AC+ +Y  ++ +G +  +DD  
Sbjct: 301 GAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDADADAACQSLYDAVAALGLEALYDDRD 360

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E+ GS+F   D++G P ++ VG + + +  VE+  R TG  E+M  E+ I
Sbjct: 361 ERAGSKFGTMDMIGLPWRITVGPRGLKNGVVELTSRKTGESEEMPPEQAI 410


>gi|58038568|ref|YP_190532.1| prolyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|81819190|sp|Q5FUU9|SYP_GLUOX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58000982|gb|AAW59876.1| Prolyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 438

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/435 (51%), Positives = 303/435 (69%), Gaps = 3/435 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K F P L+E P +A+IASH+LMLR G++ Q + GIY+WLP G + L N+  IIREE
Sbjct: 1   MRLTKAFQPTLKEVPAEAQIASHRLMLRAGLVRQTASGIYAWLPAGLRVLRNIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PTLQSA+LW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TDIF S
Sbjct: 61  QDAIGAQEVLMPTLQSAELWRRSGRYDAYGPEMLRIQDRHGRDLLYGPTNEEMITDIFGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD + EG+  SY +M +S
Sbjct: 121 SVKSYKELPKALYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDASYEGAVASYRRMMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF RLG++++PM A++GPIGGDLSHEF+VLA TGE+ VF      +    S   D D
Sbjct: 181 YLRIFQRLGVRAVPMVADTGPIGGDLSHEFLVLAPTGESAVFFDAALEEQDWLSRPVDCD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL +     T  YAAT + H+E  +  +P  ++   RGIEVGHIFYFGTKY+  M  
Sbjct: 241 DAESLATFFATVTDHYAATDEKHDEAEWAKVPAERKREGRGIEVGHIFYFGTKYTASMGI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   +  MGSYG+G  R+V A+IE+SHD  GIIWP SVAP++ +++N++  D+ 
Sbjct: 301 EVSGPDGAPFHPHMGSYGVGVSRLVGAIIEASHDDAGIIWPASVAPYRAAILNLRQDDEA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   C++IY    +   ++ +DD  E+ G +F  ADL+G P Q+IVG +   + KVE+K 
Sbjct: 361 CDAICDRIYGTDPE---NLLYDDRSERAGVKFNDADLMGHPWQIIVGPRGAKEGKVELKQ 417

Query: 421 RLTGIREDMSLEEVI 435
           R TG R ++S+E+ +
Sbjct: 418 RATGERFELSVEDAL 432


>gi|262277283|ref|ZP_06055076.1| prolyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262224386|gb|EEY74845.1| prolyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 442

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/438 (50%), Positives = 306/438 (69%), Gaps = 8/438 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S YFLPIL+ENP +A+I SH+LMLR GMI Q + GIYSWLP+G K L N+  I+REE
Sbjct: 1   MKLSNYFLPILKENPSEAKIKSHQLMLRAGMIRQSASGIYSWLPMGFKVLKNIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GAIE+ +PT+QSAD+W ESGRYD YGKEMLR++DR+++ ++YGPT+EE++T IFR 
Sbjct: 61  QNKAGAIELLMPTIQSADIWKESGRYDDYGKEMLRISDRHERDLLYGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+NLP   Y IQ KFRDE+RPRFGVMR REFLMKD YSFD+    ++ SY KMF+S
Sbjct: 121 NIKSYKNLPLMLYHIQWKFRDEIRPRFGVMRCREFLMKDTYSFDVDKATAEFSYKKMFLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F +  L +IPM+AE+GPIGGDLSHEFI+LADTGE++VF  K+ +D  I     D+ 
Sbjct: 181 YLKTFQKFELNAIPMKAETGPIGGDLSHEFIILADTGESEVFLDKNLLD--IDVNEVDYS 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +  ++N I+E+++  Y+AT + H+   F+ ++ +  ++  +GIE+GHIFYFG KYS  M 
Sbjct: 239 E-KNINEIIERFSKFYSATDEKHDVNEFENNVSKENQLRTKGIEIGHIFYFGDKYSKSMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A     +GK+   QMGSYGIG  R+ AA+IE+ ++G  + WP +V PFK+++IN+  +  
Sbjct: 298 ALVNNKEGKNINPQMGSYGIGVSRLPAAIIEAKYNGTFMKWPKTVTPFKVAIINLGKNGD 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +IY  L     D   DD  E   S+F   DL+G P Q+I+GSK   D   E +
Sbjct: 358 EADQKSNEIYQNLINANLDPILDDTSENPSSKFKNFDLIGIPYQIIIGSKLKKD---EFE 414

Query: 420 HRLTGIRE-DMSLEEVIN 436
            +  G  +  +S EEVIN
Sbjct: 415 FKEIGEEKLILSKEEVIN 432


>gi|296116519|ref|ZP_06835129.1| prolyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976731|gb|EFG83499.1| prolyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 439

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/436 (51%), Positives = 301/436 (69%), Gaps = 3/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q S GIY+WLP G K L N+  I+R E
Sbjct: 1   MRLSRSFLPTLKENPAEAQITSHRLMLRAGLIRQTSAGIYAWLPAGLKVLRNIANIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA EM +PTLQS++LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 61  QDAIGAQEMLMPTLQSSELWKRSGRYDAYGPEMLRIRDRHERDLLYGPTNEEMVTDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y +Q KFRDE+RPRFGVMR REF MKDAYSFD   + +  SY +M ++
Sbjct: 121 VVKSYRELPQVLYHVQWKFRDEVRPRFGVMRGREFYMKDAYSFDADYDAAVDSYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IPM A++GPIGG+LSHEF+VLA TGE+ VF    F +    SE  D  
Sbjct: 181 YLRTFQRLGVKAIPMVADTGPIGGELSHEFLVLAPTGESGVFFDGAFEEQDWLSEEVDIA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL     + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 241 DRASLAKFFARMTSFYAATDEKHDEAQWAKVPVERRREGRGIEVGHIFHFGRKYTESMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G DG   + +MGSYGIG  R+VAA+IE+SHD +GIIWP++VAPF   +IN+K  D  
Sbjct: 301 SVSGPDGAPLFPEMGSYGIGVSRLVAAIIEASHDEQGIIWPETVAPFGAVIINLKNGDAQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C + CE++YA        + +DD  E+ G +FA ADL+G P QVIVG +      VE+K+
Sbjct: 361 CDEICERLYAAAPD---RLLYDDRPERAGVKFADADLMGHPWQVIVGPRGAKAGVVELKN 417

Query: 421 RLTGIREDMSLEEVIN 436
           R +G R ++ ++ V+ 
Sbjct: 418 RASGERSELPIDAVLT 433


>gi|330814001|ref|YP_004358240.1| prolyl-tRNA synthetase Bacterial type [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487096|gb|AEA81501.1| prolyl-tRNA synthetase Bacterial type [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 441

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/439 (51%), Positives = 308/439 (70%), Gaps = 9/439 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S +FLPIL++ P DA I SH+LMLR+GMI Q + GIYSWLPLG K L  + +I+R+E
Sbjct: 1   MKLSNFFLPILRDVPSDATIKSHQLMLRSGMIRQSASGIYSWLPLGFKVLKKIESIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GA EM +PT+QSADLW ESGRYD YG EMLR+ DR D+ ++YGPT+EE++T IFR 
Sbjct: 61  QNKAGAQEMLMPTIQSADLWKESGRYDGYGLEMLRIRDRQDRELLYGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++K+Y++LP   Y IQ KFRDE+RPRFG+MR REFLMKD+YSFD   EG+  SYNKMF +
Sbjct: 121 NVKTYKSLPLILYHIQWKFRDEIRPRFGIMRCREFLMKDSYSFDENKEGAIISYNKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           YL+ F RLGL++IPM A++GPIGGDLSHEFI+LADTGE+Q+F SK  +D  I    +DF 
Sbjct: 181 YLKTFERLGLRAIPMAADTGPIGGDLSHEFIILADTGESQIFTSKKILDLKI----SDFK 236

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPM 298
           +D  SL  +V+ +T  Y+AT +  N+  FD   E K ++  RGIEVGHIFYFG KYS PM
Sbjct: 237 NDSESLAKMVKSYTDIYSATDEKFNQSDFDKSVEKKDQLVTRGIEVGHIFYFGDKYSKPM 296

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
            A    ++GK+  ++MGSYGIG  R+  A+IE+++    + WP SV PF +++I + K +
Sbjct: 297 KALVNSSEGKNITIEMGSYGIGVSRLAGAIIEANYKDNVMKWPASVTPFHVAVIYLGKKN 356

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+  +     +Y +L     +V  DD  E   S+F   DL+G P Q+I+G+K   D + E
Sbjct: 357 DETLKKKTSDVYEKLLNNSFEVLLDDTDESPASKFKNFDLIGIPYQIIIGAKQSGD-EFE 415

Query: 418 IKHRLTGIREDMSLEEVIN 436
            K  L   +E ++L+ +IN
Sbjct: 416 FKE-LGEEKEIINLDIIIN 433


>gi|67458992|ref|YP_246616.1| prolyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|75536572|sp|Q4ULX2|SYP_RICFE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|67004525|gb|AAY61451.1| Prolyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 427

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/439 (49%), Positives = 308/439 (70%), Gaps = 16/439 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++ +K F       +N + D
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYNKRFKTL---KDNPNID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   VE+  + YAA  + H+    + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 238 --------VEEIKSWYAAAEEKHD---VNKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 286

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   V+M SYGIG  R+VAA+IE++ + KGIIWP +VAPFK+SLIN+  HD
Sbjct: 287 NALINDEHGKLTPVEMSSYGIGISRLVAAIIEANCNEKGIIWPSNVAPFKVSLINLNIHD 346

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +   K+Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +D  VE+
Sbjct: 347 SKCVELAAKVYKELSAQNIEVLYDDTEARAGSKFATHDLIGSPYQIIIGPKKAADDIVEL 406

Query: 419 KHRLTGIREDMSLEEVINY 437
           K+R  G+ ED+ +E +I+Y
Sbjct: 407 KNRKIGVIEDIEVENLIHY 425


>gi|51473574|ref|YP_067331.1| prolyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|81826313|sp|Q68WZ3|SYP_RICTY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51459886|gb|AAU03849.1| Proline translase [Rickettsia typhi str. Wilmington]
          Length = 428

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/437 (50%), Positives = 304/437 (69%), Gaps = 12/437 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLPIL+E P +A++ SHKLMLR+GMI + + G+Y+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPILKEEPSEAQVISHKLMLRSGMIMKQASGLYTWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR++ YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKVGALEVLMPCIQPAHLWIESGRFEYYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E + ++YNKM+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINQENAVNTYNKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K    F I  +N D D
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDK---RFKILKDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   VE+  + YAA  + H+     S PE    S++GIEVGHIFY G+KYS+ M+A
Sbjct: 238 --------VEEIKSWYAAAEEKHDVNKLSSFPEG-ITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+ AA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLIPVEMSSYGIGISRLAAAIIEANCDKKGIIWPFSVAPFKVSLINLNIHDNK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K    LS    +V +DD   + GS+FA  DL+G P QVI+G K  +++ VE+K 
Sbjct: 349 CVELAAKTDKELSNKNIEVLYDDTEARPGSKFATHDLIGSPYQVIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINY 437
           R TG+ ED+ +E +INY
Sbjct: 409 RKTGVLEDIEIENLINY 425


>gi|239947222|ref|ZP_04698975.1| prolyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|241068545|ref|XP_002408465.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|215492453|gb|EEC02094.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|239921498|gb|EER21522.1| prolyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 426

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/433 (50%), Positives = 303/433 (69%), Gaps = 16/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLM R+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMFRSGMIRQQAAGIYTWLPLGLKLLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F       +N+D D
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKRFKTL---KDNSDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   VE+  + YAA  + H+    + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 238 --------VEEIKSWYAAAEEKHD---VNKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 286

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD
Sbjct: 287 NALINDEHGKLTPVEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHD 346

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +   K Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +D+ VE+
Sbjct: 347 SKCVELAAKAYKELSAQNIEVLYDDTEARAGSKFATHDLIGSPYQIIIGPKKAADNIVEL 406

Query: 419 KHRLTGIREDMSL 431
           K+R +G+ ED+ +
Sbjct: 407 KNRKSGVIEDIEI 419


>gi|58698845|ref|ZP_00373719.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630527|ref|YP_002727318.1| prolyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|254782927|sp|C0R3N5|SYP_WOLWR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58534643|gb|EAL58768.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592508|gb|ACN95527.1| prolyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 422

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/441 (51%), Positives = 306/441 (69%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIYSWLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYSWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GAIE+ +P +Q A+LW ESGRYD YGKEMLR+ DR+++ M++GPTHEEV TD+ R 
Sbjct: 61  MDKSGAIEVLMPCVQPANLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEVATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++GPIGG+LSHEF +LA+TGE+ ++    F      SE  + +
Sbjct: 181 YIKIFKRMGLTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKF------SELLESE 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ SL SI       YA   D+H+ +      E   VS +GIE+GHIFYFG KYS PM A
Sbjct: 235 DVESLKSI-------YAVADDMHDPETCPISQEQLNVS-KGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+SVAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPESVAPFRIGLINLQTK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K + +  VE+K+
Sbjct: 344 VTEAADKIYKALK--SDEVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAIDEKIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE IN+ S +
Sbjct: 402 RATGEVKEMQIEEAINHFSTK 422


>gi|15604249|ref|NP_220765.1| prolyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|6226191|sp|Q9ZDE7|SYP_RICPR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3860941|emb|CAA14841.1| PROLYL-TRNA SYNTHETASE (proS) [Rickettsia prowazekii]
 gi|292571991|gb|ADE29906.1| Prolyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 432

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/437 (49%), Positives = 302/437 (69%), Gaps = 12/437 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLPIL+E P +A++ SHKLMLR+GMI + + G+Y+WLPLG K L N+  ++R  
Sbjct: 1   MLLSKYFLPILKEEPSEAKVISHKLMLRSGMIMKQAAGLYTWLPLGLKVLKNIENVVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR++ YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKVGALEVLMPCIQPAHLWIESGRFEHYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  + + ++YNKM+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINQKNAVNTYNKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K    F I  +N D D
Sbjct: 181 YMNTFRDLGVFAIPVIADNGPIGGNLSHEFHIVAETGESTIYYDK---RFKILKDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   VE+    YAA  + H+     S PE     ++GIEVGHIFY G+KYS+ M+A
Sbjct: 238 --------VEEIKGWYAAAEEKHDVNKLSSFPEG-ITRSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+ AA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLIPVEMSSYGIGISRLAAAIIEANCDKKGIIWPCSVAPFKVSLINLNIHDNK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K    LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAAKTDKELSHQNIEVLYDDTDARPGSKFATHDLIGSPYQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINY 437
           R TG+ ED+ +E +INY
Sbjct: 409 RKTGVLEDIEVENIINY 425


>gi|157803870|ref|YP_001492419.1| prolyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|166980151|sp|A8EZ51|SYP_RICCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157785133|gb|ABV73634.1| prolyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 438

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/433 (50%), Positives = 305/433 (70%), Gaps = 16/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A+I SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQITSHKLMLRSGMIRQQAAGIYTWLPLGLKILKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+++YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFENYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+MF +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LS+EF ++A+TGE+ ++  K F  F    +N D D
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSNEFHIIAETGESTLYYDKRFKIF---KDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   VE+  + YAA+ + H+    + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 238 --------VEEIKSWYAASEEKHD---VNKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 286

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD
Sbjct: 287 NALINDEHGKLTPVEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHD 346

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +  E+ Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE 
Sbjct: 347 SKCTELAERAYKELSAQNIEVLYDDTDVRPGSKFATHDLIGSPYQIIIGPKKAANNIVEF 406

Query: 419 KHRLTGIREDMSL 431
           K+R +G+ ED+ +
Sbjct: 407 KNRKSGVIEDIKI 419


>gi|190570494|ref|YP_001974852.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019252|ref|ZP_03335059.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356766|emb|CAQ54125.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995361|gb|EEB56002.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 419

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/443 (51%), Positives = 305/443 (68%), Gaps = 26/443 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+LP L+E P  AEI SH+ +LR G+I Q + GIYSWLPLG   L N+  IIR+E
Sbjct: 1   MRLSQYYLPTLKETPAGAEIISHQYLLRAGLIKQTASGIYSWLPLGLLVLKNIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+ +P +Q A LW ESGRYD YGKEMLR+ DR++  M++GPTHEEV+TD+ R+
Sbjct: 61  ---IGAIEVLMPCVQPASLWRESGRYDDYGKEMLRIKDRHESDMLFGPTHEEVVTDLIRN 117

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 118 TVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 177

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++GPIGG+LSHEF +LA+TGE+ ++      +        + +
Sbjct: 178 YIKIFKRMGLTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKLFEL------LESE 231

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DI SL SI       YA   D+H+ +      E   VS +GIE+GHIFYFG KYS PM A
Sbjct: 232 DIESLKSI-------YAVADDMHDPESCPITQEQLNVS-KGIEIGHIFYFGDKYSKPMKA 283

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP++VAPFK+ LIN++     
Sbjct: 284 SVTSQDGKNVNMHMGSYGIGVSRLVGAIIEAFHDDKGIIWPEAVAPFKVGLINLQTK--- 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD  E +G +FA  DL+G P Q+I+G K VS++ VE+K+
Sbjct: 341 VTEAADKIYKALK--SDEVLYDDTDESVGVKFARMDLIGLPWQIIIGKKAVSENIVEVKN 398

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++ +EE IN    RFS
Sbjct: 399 RATGEVEEIQVEEAIN----RFS 417


>gi|91205619|ref|YP_537974.1| prolyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|157827332|ref|YP_001496396.1| prolyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|114152245|sp|Q1RIC9|SYP_RICBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980150|sp|A8GU77|SYP_RICB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91069163|gb|ABE04885.1| Prolyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|157802636|gb|ABV79359.1| prolyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 432

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/433 (49%), Positives = 301/433 (69%), Gaps = 13/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E+P +A+I SHKLMLR+GMI Q + GIYSWLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEDPSEAQITSHKLMLRSGMIRQQAAGIYSWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G +E+ +P +Q A LWVESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR+
Sbjct: 61  MDKAGCLEVLMPCIQPAHLWVESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMVTDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDEESAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ ++P+ A++GPIGG LSHEF ++A+TGE+ ++  K F       +N D D
Sbjct: 181 YINTFRDLGVFAVPVIADNGPIGGKLSHEFHIIAETGESNIYYDKRFKTL---KDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E+  + YAA  + H+     S  + +  S++GIEVGHIFY GTKYS+ M+A
Sbjct: 238 --------IEEIKSWYAAAEEKHDASKLSS--DKEITSSKGIEVGHIFYIGTKYSVNMNA 287

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP +VAPFKISLIN+  HD  
Sbjct: 288 LINDEHGKLTPIEMSSYGIGISRLVAAIIEANSDAKGIIWPIAVAPFKISLINLNIHDSK 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E++Y  L     +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K+
Sbjct: 348 CLELAERVYNELLAQNIEVLYDDTDVRAGSKFATHDLIGSPYQIIIGPKKAANNIVELKN 407

Query: 421 RLTGIREDMSLEE 433
           R  G  ED+ L +
Sbjct: 408 RKNGEIEDIDLNK 420


>gi|58584338|ref|YP_197911.1| prolyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|81311670|sp|Q5GTK5|SYP_WOLTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58418654|gb|AAW70669.1| Prolyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 425

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/437 (50%), Positives = 299/437 (68%), Gaps = 16/437 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+LP L+E P  A I SH+  LR G+I Q + GIY+WLPLG + L N+  IIR+E
Sbjct: 1   MRLSQYYLPTLKEKPAHARIISHQYSLRAGLIKQIASGIYTWLPLGLRVLKNIEGIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGK MLR+ DR+++ M++GPTHEEV TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKTMLRIRDRHEEDMLFGPTHEEVATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+NLP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSF++  E + +SYN M+ +
Sbjct: 121 IVKSYKNLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFNVNYESALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++G IGG+LSHEF +LA TGE+ ++    F +        + +
Sbjct: 181 YIKIFKRMGLIPIGVRADTGLIGGNLSHEFHILASTGESTLYYDNKFFEL------LESE 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ SL SI       YA   D+H+ K    +P+ +   ++GIE+GHIFYFG KYS PM+A
Sbjct: 235 DVKSLKSI-------YAVADDIHDPKTC-PVPQEQLNVSKGIEIGHIFYFGDKYSKPMNA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                DGK+  + MGSYGIG  R+V A+IE+ HD KGI WP++VAPF++ LIN++     
Sbjct: 287 KVTAQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGITWPEAVAPFRVGLINLQTKTAE 346

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KIY+ L     +V +DD    IG +FA  DL+G P Q+IVG K VS++ +EIK+
Sbjct: 347 YVEIANKIYSTLK--SDEVLYDDTEGSIGVKFAKMDLIGLPWQIIVGKKAVSENIIEIKN 404

Query: 421 RLTGIREDMSLEEVINY 437
           R TG  E++ +EE INY
Sbjct: 405 RATGKVEEVQIEEAINY 421


>gi|225631202|ref|ZP_03787900.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591110|gb|EEH12294.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 422

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/441 (50%), Positives = 303/441 (68%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIY+WLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYTWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+G   I +RA++GPIGG+LSHEF +LA+TGE+ ++    F      SE  + +
Sbjct: 181 YIKIFKRMGFTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKF------SELLESE 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DI SL SI       YA   D+H+ +      E   VS +GIE+GHIFYFG KYS PM A
Sbjct: 235 DIESLKSI-------YAVADDMHDPETCPISQEQLNVS-KGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+SVAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPESVAPFRIGLINLQPK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K + +  VE+K+
Sbjct: 344 VTEAADKIYKALK--SDEVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAIDEKIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE +N+ S +
Sbjct: 402 RATGEVKEMPIEEAVNHFSTK 422


>gi|42520651|ref|NP_966566.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81831258|sp|Q73GW6|SYP_WOLPM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42410390|gb|AAS14500.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 422

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/441 (51%), Positives = 303/441 (68%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIY+WLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYTWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+G   I + A++GPIGG+LSHEF +LA+TGE+ ++    F      SE  + +
Sbjct: 181 YIKIFKRMGFTPIGVGADTGPIGGNLSHEFHILANTGESTLYYDNKF------SELLESE 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DI SL SI       YA   D+H+ +      E   VS +GIE+GHIFYFG KYS PM A
Sbjct: 235 DIESLKSI-------YAVADDMHDPETCPISQEQLNVS-KGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+ VAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPEEVAPFRIGLINLQTK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K VS++ VE+K+
Sbjct: 344 VTEAADKIYKALK--SDEVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAVSENIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE IN+ S +
Sbjct: 402 RATGEVKEMQIEEAINHFSAK 422


>gi|157964462|ref|YP_001499286.1| prolyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844238|gb|ABV84739.1| Prolyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 437

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/433 (49%), Positives = 300/433 (69%), Gaps = 16/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 10  MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 69

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++ PT+E+++TDIFR 
Sbjct: 70  MNKAGALEILMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFSPTNEDMITDIFRH 129

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 130 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 189

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F       +N D D
Sbjct: 190 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKKFKTL---KDNPDID 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   VE+  + YAA  + H     + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 247 --------VEEIKSWYAAAEEKHE---VNKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 295

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD
Sbjct: 296 NALINDEHGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHD 355

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+
Sbjct: 356 SKCVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVEL 415

Query: 419 KHRLTGIREDMSL 431
           K R +G+ ED+ +
Sbjct: 416 KDRKSGVIEDIEV 428


>gi|157828402|ref|YP_001494644.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933112|ref|YP_001649901.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|166980152|sp|A8GRW1|SYP_RICRS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083508|sp|B0BXB9|SYP_RICRO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157800883|gb|ABV76136.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908199|gb|ABY72495.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 426

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/433 (49%), Positives = 302/433 (69%), Gaps = 16/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K    F I  +N D D
Sbjct: 181 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDK---KFKILKDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   VE+  + YAA  + +     + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 238 --------VEEIKSWYAAAEEKYE---VNKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 286

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD
Sbjct: 287 NALINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHD 346

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+
Sbjct: 347 SKCVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVEL 406

Query: 419 KHRLTGIREDMSL 431
           K R +G+ ED+ +
Sbjct: 407 KDRKSGVIEDIEV 419


>gi|157825653|ref|YP_001493373.1| prolyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|166980149|sp|A8GN90|SYP_RICAH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157799611|gb|ABV74865.1| prolyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 427

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/439 (49%), Positives = 303/439 (69%), Gaps = 16/439 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+YFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+   
Sbjct: 1   MLLSQYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVSLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+++YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFNNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG LSHEF ++A+TGE+ ++  K F       +N D D
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGKLSHEFHIIAETGESTIYYDKRFKTL---KDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   V++  + YAA  + H+    + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 238 --------VDEIKSWYAAAEEKHD---INKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 286

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A      GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD
Sbjct: 287 KALINDEHGKLAPVEMSSYGIGISRLVAAIIEANCDEKGIIWPFSVAPFKVSLINLNIHD 346

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +   K Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+
Sbjct: 347 SKCVELAAKAYKDLSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVEL 406

Query: 419 KHRLTGIREDMSLEEVINY 437
           K R +G  ED+ +E +INY
Sbjct: 407 KDRKSGNIEDIEVENLINY 425


>gi|15892451|ref|NP_360165.1| prolyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|229586653|ref|YP_002845154.1| prolyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|81854111|sp|Q92I92|SYP_RICCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511616|sp|C3PNA1|SYP_RICAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15619605|gb|AAL03066.1| prolyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|228021703|gb|ACP53411.1| Prolyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 426

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/433 (49%), Positives = 300/433 (69%), Gaps = 16/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+  IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F       +N D D
Sbjct: 181 YINAFRDLGVFVIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKKFKTL---KDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   VE+  + YAA  + +     + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 238 --------VEEIKSWYAAAEEKYE---VNKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 286

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD
Sbjct: 287 NALINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHD 346

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+
Sbjct: 347 SKCVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVEL 406

Query: 419 KHRLTGIREDMSL 431
           K R +G+ ED+ +
Sbjct: 407 KDRKSGVIEDIEV 419


>gi|238650930|ref|YP_002916786.1| prolyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|259511617|sp|C4K2D7|SYP_RICPU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238625028|gb|ACR47734.1| prolyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 426

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/433 (49%), Positives = 300/433 (69%), Gaps = 16/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F       +N D D
Sbjct: 181 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKKFKTL---KDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   VE+  + YAA  + +     + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 238 --------VEEIKSWYAAAEEKYE---VNKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 286

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD
Sbjct: 287 NALINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHD 346

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ V +
Sbjct: 347 SKCVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVAL 406

Query: 419 KHRLTGIREDMSL 431
           K R +G+ ED+ +
Sbjct: 407 KDRKSGVIEDIEV 419


>gi|34580554|ref|ZP_00142034.1| prolyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28261939|gb|EAA25443.1| prolyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 426

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/433 (49%), Positives = 300/433 (69%), Gaps = 16/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIEHIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++ DIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMIMDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+  IP+ A++GPIGG+LSHEF V+A+TGE+ ++  K    F I  +N D D
Sbjct: 181 YINAFRDLGVFVIPVIADNGPIGGNLSHEFHVIAETGESTIYYDK---KFKILKDNPDID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
                   VE+  + YAA  + +     + LP  E +  S++GIEVGHIFY G+KYS+ M
Sbjct: 238 --------VEEIKSWYAAAEEKYE---VNKLPISEQEITSSKGIEVGHIFYIGSKYSVNM 286

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD
Sbjct: 287 NALINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHD 346

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +  +  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+
Sbjct: 347 SKCVELADMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVEL 406

Query: 419 KHRLTGIREDMSL 431
           K R +G+ ED+ +
Sbjct: 407 KDRKSGVIEDIEV 419


>gi|148284536|ref|YP_001248626.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|146739975|emb|CAM80015.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 433

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/438 (48%), Positives = 297/438 (67%), Gaps = 15/438 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+P  AEI SHKLMLR GMI Q   GIY+WLPLG K L N+  I+R+ 
Sbjct: 1   MRLSQYFLPLLKEDPAGAEIISHKLMLRAGMIKQACAGIYNWLPLGIKVLQNIQDIVRKN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     E+ +P +Q A LW ES RY++YGKEML++ DR+D  +++GPT+EE++TDIFRS
Sbjct: 61  MNAAQCTELLMPCIQPASLWKESSRYNAYGKEMLKIKDRHDNDLLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP  FY IQ KFRDE+RPRFGVMRSREF+MKDAYSFD+    +  SYN M+++
Sbjct: 121 CIQSYKDLPKNFYHIQWKFRDEIRPRFGVMRSREFIMKDAYSFDIDQTSAIQSYNLMYLT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
           YL+IF  LGLK IP++A++G IGG LSHEF ++  TG+++++  S  F  F       D+
Sbjct: 181 YLKIFKDLGLKVIPVQADNGAIGGKLSHEFHIITATGDSKIYYDSTKFNPF-------DY 233

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-RGIEVGHIFYFGTKYSLPM 298
           +  +SLN + EQ    Y  T D H  K + +   N ++S   GIEVGHIFYFGTKYS  M
Sbjct: 234 NQDLSLNKL-EQL---YIVTEDKH--KTYQNQISNDKISTISGIEVGHIFYFGTKYSELM 287

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +  +GK   V+MGSYGIG  R++ A+IE++HD  GIIWP +VAPFK+S+IN+  ++
Sbjct: 288 KACIQMQNGKLTAVEMGSYGIGISRLIGAIIEANHDQYGIIWPQNVAPFKVSVINLLPNN 347

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C+    ++Y  L++   D   DD     G + AV DL+G P Q+I+G  F+  S +E 
Sbjct: 348 DKCKQTSNQLYQILTQQKTDALLDDTSSSAGHKLAVHDLIGIPYQIIIGKNFIETSTIEF 407

Query: 419 KHRLTGIREDMSLEEVIN 436
           K+R     + +S++ +IN
Sbjct: 408 KYRHNHQLQKLSIDALIN 425


>gi|189182913|ref|YP_001936698.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|189179684|dbj|BAG39464.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 433

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/437 (48%), Positives = 294/437 (67%), Gaps = 13/437 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+P  AEI SHKLMLR GMI Q   GIY+WLPLG K L N+  I+R+ 
Sbjct: 1   MRLSQYFLPLLKEDPAGAEIISHKLMLRAGMIKQACAGIYNWLPLGIKVLQNIQDIVRKN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    IE+ +P +Q A LW ES RY++YGKEML++ DR+D  +++GPT+EE++TDIFRS
Sbjct: 61  MNAAQCIELLMPCIQPASLWKESSRYNAYGKEMLKIKDRHDNDLLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP  FY IQ KFRDE+RPRFGVMRSREF+MKDAYSFD+    +  SYN M+++
Sbjct: 121 SIQSYKDLPKNFYHIQWKFRDEIRPRFGVMRSREFIMKDAYSFDIDQASAIQSYNLMYLT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
           YL+IF  LGLK IP++A++G IGG LSHEF ++  TG+++++  S  F  F       D+
Sbjct: 181 YLKIFKDLGLKVIPVQADNGAIGGKLSHEFHIITATGDSKIYYDSTKFNPF-------DY 233

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +  +SLN + EQ    Y  T D H     + +  +   +  GIEVGHIFYFGTKYS  M 
Sbjct: 234 NQDLSLNKL-EQL---YIVTEDKHKTDQ-NQISNDTISTISGIEVGHIFYFGTKYSELMK 288

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A  +  +GK   V+MGSYGIG  R++ A+IE++HD  GIIWP +VAPFK+S+IN+  ++ 
Sbjct: 289 ACIQLQNGKLTAVEMGSYGIGISRLIGAIIEANHDEYGIIWPQNVAPFKVSVINLLPNND 348

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C+    ++Y  L++   D   DD     G + A  DL+G P Q+I+G  F+  + +E K
Sbjct: 349 KCKQTSNQLYQILTQQKTDALLDDTSSSAGHKLAAHDLIGIPYQIIIGKNFIETATIEFK 408

Query: 420 HRLTGIREDMSLEEVIN 436
           +R     + +S++ +IN
Sbjct: 409 YRHNQQLQKLSIDALIN 425


>gi|254455357|ref|ZP_05068786.1| prolyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082359|gb|EDZ59785.1| prolyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 444

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/449 (47%), Positives = 301/449 (67%), Gaps = 9/449 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MLLSKSFIPILKNNPSEAKIKSHQLMLRVGMIKQASAGIYSWLPLGFKVMKKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q++ GA E+ +PT+QS+++W ESGRYD YG+EMLR+ DR ++ M+YGPT+EE +T+IFRS
Sbjct: 61  QDKIGAQEILMPTIQSSEIWKESGRYDDYGEEMLRIKDRQNREMLYGPTNEEQVTEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+T E +  SYNK F+S
Sbjct: 121 SLKSYKSLPQLLYHIQWKFRDEIRPRFGIMRGREFYMKDAYSFDITDEDAFFSYNKFFLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D  + +++T+ +
Sbjct: 181 YLRTFKRLSLTAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRIFD--LTNDDTELE 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
              SL  + +++   Y+ T +  N+  F+ +  E  R+  +GIEVGHIFYFG KYS  M 
Sbjct: 239 K-SSLEQMRKRYEKFYSVTDEKFNKVEFEKMVSEENRLITKGIEVGHIFYFGDKYSKAMD 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--WPDSVAPFKISLIN-IKA 356
                  GK  +V+MGSYGIG  R+V A+IE+ +D +  I  WP SVAP+ I+LI  I  
Sbjct: 298 TAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDDENEIMKWPLSVAPYDIALIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    +   KI + L +   +   DD  E   S+    +L+G P Q+I+G K  SD  +
Sbjct: 358 NDNSALEKANKINSELIRNNIEAIIDDTDENYSSKIKKMNLIGAPYQIIIGKK--SDGDL 415

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
                  G  +++SLE++I   + + ++N
Sbjct: 416 LEFKEPGGETQNLSLEKIIEIITKQKASN 444


>gi|71083600|ref|YP_266319.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
 gi|114152227|sp|Q4FM73|SYP_PELUB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71062713|gb|AAZ21716.1| proline-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 444

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/424 (50%), Positives = 284/424 (66%), Gaps = 8/424 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MYISKSFIPILKNNPSEAKIKSHQLMLRVGMIKQSSAGIYSWLPLGFKVMKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GA E+ +PT+Q +D+W ESGRYD YG EMLR+ DR  + M+YGPT+EE++TDIFRS
Sbjct: 61  QNKIGAQEILMPTIQPSDIWKESGRYDDYGDEMLRIKDRQGREMLYGPTNEELVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+  E +  SYNK F S
Sbjct: 121 SVKSYKSLPQLLYHIQWKFRDEVRPRFGIMRGREFYMKDAYSFDVNDEDATFSYNKFFFS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D  + SE T  D
Sbjct: 181 YLKTFKRLELSAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRVFD--LGSEGTVLD 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              SL  + +++   YA   +  N+  F + + E  R+  +GIEVGHIFYFG KYS  ++
Sbjct: 239 R-QSLQDLRKKYEQYYAVADEKFNKNEFEEKVSEENRLITKGIEVGHIFYFGDKYSKALN 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--WPDSVAPFKISLIN-IKA 356
           A      GK  +V+MGSYGIG  R+V A+IE+ +D K  I  WP SVAP+++++I  I  
Sbjct: 298 AAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDQKDEIMKWPFSVAPYELAIIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    D   K++        D   DDM E + S+    +L+G P Q+I+G K   D+ +
Sbjct: 358 NDTSALDKANKLFKHFESKNIDTIIDDMDENLSSKIKKFNLIGVPYQIILG-KNSEDNLL 416

Query: 417 EIKH 420
           E K 
Sbjct: 417 EFKE 420


>gi|58617074|ref|YP_196273.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|81311371|sp|Q5FHL5|SYP_EHRRG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58416686|emb|CAI27799.1| Prolyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 426

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/436 (46%), Positives = 287/436 (65%), Gaps = 15/436 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E P D  + SH   LR+G+I Q + GIY+WLPLG K L N+  +I+EE
Sbjct: 1   MRLSKYYIPTLKETPTDVSVTSHVYSLRSGLIRQVASGIYAWLPLGLKVLKNIENVIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G +E+ +P +Q A LW ESGRY+ YG EMLR+ DRN++ M++GPTHEEV+TD+ R+
Sbjct: 61  MNKSGILEVLMPLIQPASLWQESGRYNDYGSEMLRIKDRNNREMVFGPTHEEVVTDLLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQ+Q KFRDELRPR+G+MR REFLMKDAYSFD     +  SYN MF  
Sbjct: 121 TLTSYKNLPLILYQVQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFNSAIESYNLMFKV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF RLGL  I ++A+SGPIGG+LSHEF +LA++GE+ ++            +    +
Sbjct: 181 YIQIFRRLGLTPIAVKADSGPIGGNLSHEFHILANSGESTLYY-----------DQDIIN 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I + N  +E+    Y A  D+HN +    +P +   +++GIE+GHIFY G KYS  M+A
Sbjct: 230 LINNDNIDIEKIKNTYTAADDLHNSETC-PIPASNIKTSKGIEIGHIFYLGDKYSKTMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   + +   + MG YGIG  R+V A+IE SHD  GIIWP+ +APFK SL+N+ + ++ 
Sbjct: 289 AF-SQNNETQLLHMGCYGIGVSRLVGAIIEVSHDNNGIIWPEEIAPFKFSLVNVFSANKE 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR+  E +YA+L     DV +DD  +  G +F+  DLLG P QVI+G   +    +E++ 
Sbjct: 348 CRNISENLYAKLD--SNDVLYDDTEDSTGIKFSRMDLLGMPWQVIIGKTTIEHGLIEVRQ 405

Query: 421 RLTGIREDMSLEEVIN 436
           R +     MS E+ +N
Sbjct: 406 RSSKKSLLMSTEQFLN 421


>gi|91761979|ref|ZP_01263944.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717781|gb|EAS84431.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 444

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/424 (50%), Positives = 283/424 (66%), Gaps = 8/424 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MYISKSFIPILKNNPSEAKIKSHQLMLRVGMIKQSSAGIYSWLPLGFKVMKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN  GA E+ +PT+Q +D+W ESGRYD YG EMLR+ DR  + M+YGPT+EE++TDIFRS
Sbjct: 61  QNTIGAQEILMPTIQPSDIWKESGRYDDYGDEMLRIKDRQGREMLYGPTNEELVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+  E +  SYNK F S
Sbjct: 121 SVKSYKSLPQLLYHIQWKFRDEVRPRFGIMRGREFYMKDAYSFDVNDEDATFSYNKFFFS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D  + SE T  D
Sbjct: 181 YLKTFKRLELSAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRVFD--LGSEGTVLD 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              SL  + +++   YA   +  N+  F + + E  R+  +GIEVGHIFYFG KYS  ++
Sbjct: 239 R-QSLQDLRKKYEQYYAVADEKFNKNEFEEKVSEENRLITKGIEVGHIFYFGDKYSKALN 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--WPDSVAPFKISLIN-IKA 356
           A      GK  +V+MGSYGIG  R+V A+IE+ +D K  I  WP SVAP+++++I  I  
Sbjct: 298 AAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDQKDEIMKWPFSVAPYELAIIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    D   K++        D   DDM E + S+    +L+G P Q+I+G K   D+ +
Sbjct: 358 NDTSALDKANKLFKHFESKNIDTIIDDMDENLSSKIKKFNLIGVPYQIILG-KNSEDNLL 416

Query: 417 EIKH 420
           E K 
Sbjct: 417 EFKE 420


>gi|73666953|ref|YP_302969.1| prolyl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|114152194|sp|Q3YSD4|SYP_EHRCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72394094|gb|AAZ68371.1| Prolyl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 424

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/436 (46%), Positives = 287/436 (65%), Gaps = 18/436 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+E   D  + SHK  +R G+I Q + GIY+WLPLG + L N+  I+REE
Sbjct: 1   MRLSNYYIPTLKETSADVSVVSHKYSIRAGLIKQIASGIYTWLPLGLRVLRNIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q A LW ESGRYD YG EMLR+ DRN + M++GPTHEEV+TD  R+
Sbjct: 61  MNKSGALEVLMPLIQPASLWKESGRYDDYGSEMLRITDRNQREMLFGPTHEEVITDTLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S++NLP T YQIQ KFRDELRPR+G+MR REFLMKDAYSFD    G+  SYN MF +
Sbjct: 121 TLTSHKNLPITLYQIQWKFRDELRPRYGIMRCREFLMKDAYSFDKDLSGAILSYNLMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF  LGL  I ++AESGPIGG+LSHEF VLA++GE+ ++  ++ ++  + S+N D  
Sbjct: 181 YIKIFKNLGLTPIAVKAESGPIGGNLSHEFHVLANSGESTLYYDQEIIEL-MNSDNID-- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E+    Y A  D+H+ +    +P N   +++GIE+GHIFY G KYS PM+A
Sbjct: 238 --------IERIKNTYTAADDMHDPQTC-PIPPNNIKTSKGIEIGHIFYLGDKYSKPMNA 288

Query: 301 TFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F   D  D   +QMG YGIG  R+VAA+IE  HD KGI WP+ ++PFK SL+N+ + + 
Sbjct: 289 NF--CDNNDSKPLQMGCYGIGISRLVAAIIEVFHDNKGITWPEEISPFKFSLVNLYSSND 346

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C    E ++ +L     DV +DD  +  G +    DLLG P Q+I+G   V    +E++
Sbjct: 347 KCIKVAENLHMQLHN---DVLYDDTDDSPGIKLTRTDLLGMPWQIIIGKSTVEQDLIEVR 403

Query: 420 HRLTGIREDMSLEEVI 435
           +R    +  +S+E+ +
Sbjct: 404 NRSNKDKFLISVEQFL 419


>gi|57239072|ref|YP_180208.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579015|ref|YP_197227.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81819260|sp|Q5HBI6|SYP_EHRRW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57161151|emb|CAH58064.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417641|emb|CAI26845.1| Prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 426

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/436 (46%), Positives = 285/436 (65%), Gaps = 15/436 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E P D  + SH   LR+G+I Q + GIY+WLPLG K L N+  +I+EE
Sbjct: 1   MRLSKYYIPTLKETPADVSVTSHVYSLRSGLIRQVASGIYAWLPLGLKVLKNIENVIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G +E+ +P +Q A LW ESGRY+ YG EMLR+ DRN++ M++GPTHEEV+TD+ R+
Sbjct: 61  MNKSGILEVLMPLIQPASLWQESGRYNDYGSEMLRIKDRNNREMVFGPTHEEVVTDLLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQ+Q KFRDELRPR+G+MR REFLMKDAYSFD     +  SYN MF  
Sbjct: 121 TLTSYKNLPLILYQVQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFNSAIESYNLMFKV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF RLGL  I ++A+SGPIGG+LSHEF +LA++GE+ ++            +    +
Sbjct: 181 YIQIFRRLGLTPIAVKADSGPIGGNLSHEFHILANSGESTLYY-----------DQDIIN 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I + N  +E+    Y A  D+HN +    +P +    ++GIE+GHIFY G KYS  M+A
Sbjct: 230 LINNDNIDIEKIKNTYTAADDLHNSETC-PIPASNIKKSKGIEIGHIFYLGDKYSKTMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   + +   + MG YGIG  R+V A+IE SHD  GIIWP+ +APFK SL+N+ + ++ 
Sbjct: 289 VF-SQNNETQLLHMGCYGIGVSRLVGAIIEVSHDNNGIIWPEEIAPFKFSLVNVFSANKE 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E +YA+L     DV +DD  +  G +FA  DLLG P QVI+G   +    +E++ 
Sbjct: 348 CHNISENLYAKLG--SNDVLYDDTEDSTGIKFARMDLLGMPWQVIIGKTTIEHGLIEVRQ 405

Query: 421 RLTGIREDMSLEEVIN 436
           R +     MS E+ +N
Sbjct: 406 RSSKKSLLMSTEQFLN 421


>gi|56416716|ref|YP_153790.1| prolyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|81821288|sp|Q5PAZ5|SYP_ANAMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56387948|gb|AAV86535.1| prolyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 425

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/435 (47%), Positives = 283/435 (65%), Gaps = 15/435 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG   SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGVMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D    S+N D+ 
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDL---SKN-DY- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 236 ------CTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DG   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKDGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALADSS---LYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVI 435
           R  G  E  +++ +I
Sbjct: 406 RANGATERCTVDALI 420


>gi|222475082|ref|YP_002563497.1| prolyl-tRNA synthetase (proS) [Anaplasma marginale str. Florida]
 gi|254994925|ref|ZP_05277115.1| prolyl-tRNA synthetase [Anaplasma marginale str. Mississippi]
 gi|255003060|ref|ZP_05278024.1| prolyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico]
 gi|222419218|gb|ACM49241.1| prolyl-tRNA synthetase (proS) [Anaplasma marginale str. Florida]
          Length = 425

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/435 (46%), Positives = 284/435 (65%), Gaps = 15/435 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIEHIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG+  SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGAMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D    S+N D+ 
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDL---SKN-DY- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 236 ------CTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKNGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALADSS---LYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVI 435
           R  G  E  +++ +I
Sbjct: 406 RANGATEKCTVDALI 420


>gi|88657672|ref|YP_507541.1| prolyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|114152195|sp|Q2GG92|SYP_EHRCR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88599129|gb|ABD44598.1| prolyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 424

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/436 (46%), Positives = 287/436 (65%), Gaps = 16/436 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+E   D  + SHK  +R G+I Q + GIY+WLPLG K L N+  I+REE
Sbjct: 1   MRLSDYYVPTLKETSADISVISHKYSIRAGLIKQIASGIYTWLPLGLKVLKNIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G++E+ +P +Q A LW ESGRYD YG EMLR+ DRN + M++GPTHEEV+TDI R+
Sbjct: 61  MNKSGSLEILMPLIQPASLWKESGRYDDYGSEMLRITDRNQREMLFGPTHEEVITDILRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              S+++LP   YQIQ KFRDELRPR+G+MR REFLMKDAYSFD    G+  SYN MF +
Sbjct: 121 TPVSHKDLPLILYQIQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFSGAISSYNLMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF +LGL  I ++A+SGPIGG+LSHEF VLA++GE+ ++  +D ++  + SE+ D  
Sbjct: 181 YIKIFQKLGLTPIAVKADSGPIGGNLSHEFHVLANSGESTLYYDQDIIEL-MNSESID-- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   VE+    Y A  D+H+ +      +  ++S +GIE+GHIF+ G KYS PM+A
Sbjct: 238 --------VEKIKNTYTAADDMHDPQACPISSDKVKIS-KGIEIGHIFHLGDKYSKPMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F  ++  +  +QMG YGIG  R+VAA+IE  HD KGIIWP++VAPFK SL+N+   +  
Sbjct: 289 NFCDSNN-NKLLQMGCYGIGVSRLVAAIIEVFHDNKGIIWPETVAPFKFSLVNLYTSNDK 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E ++ +L             +  G + A  DLLG P QVI+G   V    +E+++
Sbjct: 348 CKKVAENLHMQLYDDVLYDD---TDDSPGIKLARTDLLGMPWQVIIGKSTVEQDLIEVRN 404

Query: 421 RLTGIREDMSLEEVIN 436
           RLT  +  +S E+ +N
Sbjct: 405 RLTKDKVLISTEQFLN 420


>gi|255004184|ref|ZP_05278985.1| prolyl-tRNA synthetase [Anaplasma marginale str. Virginia]
          Length = 425

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/435 (46%), Positives = 283/435 (65%), Gaps = 15/435 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIEHIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG   SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGVMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D    S+N D+ 
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDL---SKN-DY- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 236 ------CTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKNGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALADSS---LYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVI 435
           R  G  E  +++ +I
Sbjct: 406 RANGATEKCTVDALI 420


>gi|269958866|ref|YP_003328655.1| prolyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848697|gb|ACZ49341.1| prolyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 425

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/435 (45%), Positives = 284/435 (65%), Gaps = 15/435 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASH+  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVIVASHRYSLRAGLVRQNASGLYTWLPLGLKVLRGIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q A+LW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPAELWRESQRYDSYGLEMLRMQDRSGREMVFGPTHEESISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP + YQ+Q KFRDELRPR G+MR REFLMKDAYSFD+  E +  SY+ +F +
Sbjct: 121 SLKSYRDLPISLYQMQWKFRDELRPRHGIMRCREFLMKDAYSFDVDFESAMRSYSNVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF RLGL +I  +A+SG IGG  SHEF VL  TGE+ V+  +  +D    S+ +   
Sbjct: 181 YLRIFRRLGLVAIAAKADSGAIGGSTSHEFHVLVPTGESTVYHDRKALDISRKSDCS--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E  T  YAAT D H+ +     P++ +VS +GIEV H+FY G +YS PM+ 
Sbjct: 238 --------MEDVTGVYAATEDAHDPQNCGVHPDDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F    G  +   MG YGIG  R+VAA+IE  HD  GI WP+S+APF++ ++N+ A +  
Sbjct: 289 KFHDKSGNSNNALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFRVGIVNLLATNGD 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IY  L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYTALADSS---LYDDSADSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVI 435
           R +G+ E  ++  +I
Sbjct: 406 RASGVTEKCTVGSLI 420


>gi|88608761|ref|YP_506256.1| prolyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|114152220|sp|Q2GE40|SYP_NEOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88600930|gb|ABD46398.1| prolyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 436

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/440 (45%), Positives = 285/440 (64%), Gaps = 11/440 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+Y+LP+++    + ++ SHK  LR G++ Q   G+YSWLPLG K L N+ ++IR+E 
Sbjct: 6   RVSEYYLPLMKNVSGEVKLRSHKYSLRAGLVKQCGAGLYSWLPLGLKVLRNIESVIRQEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P +Q A LW ESGRY  YGKE+L+  DR+D  +++GPT+EEV+T I R  
Sbjct: 66  DSMGMHEMLMPCIQLAKLWEESGRYSDYGKELLKFKDRHDNELLFGPTNEEVITAIVRDD 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY+ LP   Y IQ KFRDE+RPRFG+MR+REFLMKDAYSFD+  + ++ SYNK++ SY
Sbjct: 126 LASYKQLPKILYHIQWKFRDEIRPRFGLMRAREFLMKDAYSFDVDQQSARISYNKVYQSY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           LRIF RLGL  IP RA +G IGG L+HEF I   + GE ++F  ++  +        D  
Sbjct: 186 LRIFKRLGLNPIPCRANAGVIGGSLNHEFHITTTEGGEGKIFYPEEMGELVDEFCKIDPS 245

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +  +++ + E+    +  T + ++  + +   +N+  +A+GIEVGHIF FG KYS PM A
Sbjct: 246 NEHAVSVMTEKLQELFCFTEECNSSGIGN---DNRICTAQGIEVGHIFLFGEKYSAPMQA 302

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G DGK     MGSYGIG  R++AA+IE   D KGIIWP+S+APFKI LIN+  H + 
Sbjct: 303 RFSGRDGKKKNFYMGSYGIGISRLLAAIIEVHSDDKGIIWPESIAPFKIGLINL--HGES 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A E+I+++L      V +DD  +  G +FA  DL+G P Q+IVG        +E+K+
Sbjct: 361 CGFA-EEIFSKLD----SVIYDDTADSQGVKFARMDLIGVPFQIIVGKNGPIHGTIELKY 415

Query: 421 RLTGIREDMSLEEVINYASH 440
           RL   RE  SL E+++  SH
Sbjct: 416 RLDSKRESRSLNELVSLFSH 435


>gi|254796740|ref|YP_003081576.1| prolyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589987|gb|ACT69349.1| prolyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 436

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/436 (45%), Positives = 280/436 (64%), Gaps = 11/436 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+Y+LP+++    + ++ SHK  LR G++ Q   G+YSWLPLG K L N+ +IIR+E 
Sbjct: 6   RVSEYYLPLMKNVSGEVKLRSHKYSLRAGLVKQCGAGLYSWLPLGLKVLKNIESIIRQEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P +Q A LW ESGRY  YG+E+L+  DR+D  +++GPT+EEV+T I R  
Sbjct: 66  DSMGMHEMLMPCIQLAKLWEESGRYSDYGRELLKFKDRHDNELLFGPTNEEVITAIVRDD 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY+ LP   Y IQ KFRDE+RPRFG+MR+REFLMKDAYSFD+  + ++ SYNK++ SY
Sbjct: 126 LASYKQLPKILYHIQWKFRDEIRPRFGLMRAREFLMKDAYSFDVDQQSARISYNKVYQSY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           LRIF RLGL  IP RA +G IGG L+HEF I   + GE ++F  ++  +        D  
Sbjct: 186 LRIFKRLGLNPIPCRANAGVIGGSLNHEFHITTTEGGEGKIFYPEEIGELVDEFCKIDPS 245

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +++ +  +       T + ++  + D   +N+  +A+GIEVGHIF FG KYS PM A
Sbjct: 246 DEHAVSVMTAKLQELSCFTEECNSSSIED---DNRICAAQGIEVGHIFLFGEKYSAPMQA 302

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DG      MGSYGIG  R++AA+IE   D KGIIWP+S+APFK+ LIN+  H++ 
Sbjct: 303 RFSDRDGMKKNFYMGSYGIGISRLLAAIIEVYSDDKGIIWPESIAPFKVGLINL--HEES 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A E+I+++L      V +DD  +  G +FA  DL+G P Q+IVG   + D  VE+K 
Sbjct: 361 CGLA-EEIFSKLD----SVIYDDTTDSQGVKFARMDLIGVPFQIIVGKNAIIDGTVELKC 415

Query: 421 RLTGIREDMSLEEVIN 436
           RL   RE  +  E+I+
Sbjct: 416 RLDSKRESCNFNELIS 431


>gi|88607069|ref|YP_505231.1| prolyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|114152168|sp|Q2GK70|SYP_ANAPZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88598132|gb|ABD43602.1| prolyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 426

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/440 (45%), Positives = 284/440 (64%), Gaps = 16/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P ++    D   ASHK  +R G++ Q + GIY+ LPLG   L  V  IIREE
Sbjct: 1   MRLSEFYSPTVKNVSSDVVSASHKYSIRAGIVSQTASGIYTLLPLGLMVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +PT+Q ADLW ES RYDSYG+E++R+ DR  + M+ GPTHEEV+TD+ RS
Sbjct: 61  INAVGFSEILMPTMQPADLWKESQRYDSYGQELIRIHDRGGREMVLGPTHEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G++RSREFLM DAYSFD   E +  +Y+ +F +
Sbjct: 121 SLKSYRDLPVNLYQIQWKFRDELRPRNGILRSREFLMMDAYSFDTDFEKAMKTYDAVFRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F R+ L++I ++A+ G IGG +SHEF VL  TGE+ V+  +  ++    SE  D+ 
Sbjct: 181 YRKAFKRMNLQTIALKADMGAIGGSVSHEFHVLTPTGESTVYYDERALEL---SEMNDYG 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E+    YAAT D+H+EK     PE+ + +ARGIEVGHIFY   +YS  M+ 
Sbjct: 238 --------IEELKEVYAATDDMHDEKSCGIAPEDLK-TARGIEVGHIFYLDDRYSRTMNV 288

Query: 301 TFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F   DG    +V+MG YGIG  R++ A+IE  HD  GI WP SVAPFK+ ++N+ + ++
Sbjct: 289 KFCNTDGHSGTHVKMGCYGIGISRLIGALIEVFHDDAGIKWPLSVAPFKVGIVNLFSKNE 348

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C+   E+I++ L     D  +DD  +  G + +  DL+G P QVIVG+ F+ D  +E+K
Sbjct: 349 ECKRVSERIHSVLPN---DSLYDDRDDTPGVKLSRMDLIGLPWQVIVGNSFIKDGVLELK 405

Query: 420 HRLTGIREDMSLEEVINYAS 439
           +R TG  E +S+++V++  S
Sbjct: 406 NRATGDIELLSVDDVVSRIS 425


>gi|293374695|ref|ZP_06621003.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325840610|ref|ZP_08167091.1| proline--tRNA ligase [Turicibacter sp. HGF1]
 gi|292646609|gb|EFF64611.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325490259|gb|EGC92592.1| proline--tRNA ligase [Turicibacter sp. HGF1]
          Length = 420

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/448 (42%), Positives = 271/448 (60%), Gaps = 34/448 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+ +LR G I Q + G+Y++LPL ++ L+NV  I+R+E
Sbjct: 1   MKQSMMFIPTLREVPSDAEIRSHQFLLRAGFIKQVAAGVYTYLPLAKRVLNNVEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ  +LW ESGR+D YG E++RL DRN++    GPTHEEV+T + R 
Sbjct: 61  LDAIGGNELLMPALQPKELWDESGRWDVYGSELMRLTDRNNREFALGPTHEEVITHVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQIQ KFRDE RPRFG+MR REF+MKDAYSF  T E    +YN    +
Sbjct: 121 FLNSYKKLPLTVYQIQTKFRDEARPRFGLMRGREFIMKDAYSFHATQESLDEAYNNFVKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGG  S EF+ LA+ GE                      
Sbjct: 181 YTNIFTRCGLNFRMVEADSGQIGGSQSAEFMALAEVGE---------------------- 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
                ++IV   T  +AA  +V + ++    P+   V   A+GIEVGH+F  GTKYS PM
Sbjct: 219 -----DTIVYSTTGSFAANIEVADLEVGAPSPDGVGVVAHAKGIEVGHVFKLGTKYSEPM 273

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKA 356
           +A F   + K   + MG YGIG  RV+ AVIE ++D  G+IWP  +APF I +  +++K 
Sbjct: 274 NAVFLDENQKKQPIIMGCYGIGVSRVMMAVIEQNNDENGMIWPKGIAPFDIHVVPVDVKK 333

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            DQ+  +A E IYA L   G +V  DD  E+ G +F+ ADL+G P+++ VG + ++D  V
Sbjct: 334 ADQL--EAAENIYAELKAAGFEVLLDDRKERAGVKFSDADLIGLPIRITVG-RGIADGIV 390

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E+K R TG   ++++ +++ +   ++  
Sbjct: 391 EVKVRQTGEVAEVAVADLMTFVKEKYET 418


>gi|118595268|ref|ZP_01552615.1| prolyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
 gi|118441046|gb|EAV47673.1| prolyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
          Length = 411

 Score =  358 bits (920), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 183/424 (43%), Positives = 270/424 (63%), Gaps = 36/424 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK+++   +E P +AE+ SHKLM+R G+I +   G+Y+W+P+G + L  +   IREE
Sbjct: 1   MKASKFYISTFKEAPAEAELTSHKLMIRAGLIKKLGSGLYTWMPMGLRVLKKIENTIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P +Q A+LW E+GR++ +G +ML+++DR+D+   +GPTHEEV+TD+ R+
Sbjct: 61  MQQAGAVELLMPAIQPAELWEETGRWELFGPQMLKISDRHDRPFCFGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ+KFRDE+RPRFGVMR+REFLMKDAYSF    E  KH+Y+ MF +
Sbjct: 121 ELNSYKQLPMNFYQIQMKFRDEIRPRFGVMRAREFLMKDAYSFHADIESLKHTYDLMFKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF +LGL    ++A++G IGGD SHEF VLAD+GE ++          +  E++DF 
Sbjct: 181 YNAIFTKLGLIFRAVQADNGAIGGDGSHEFHVLADSGEDEI----------VYDEHSDF- 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV-SARGIEVGHIFYFGTKYSLPMS 299
                           AA  +V  +      P+ + + + RGIEVGHIF  GTKYS  M 
Sbjct: 230 ----------------AANIEVAKDH-----PDKRNLKTCRGIEVGHIFQLGTKYSEAMK 268

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ATF    GK   + MG YGIG  R++AA IE +HD KGII+P+S+APF++ +  I  +D+
Sbjct: 269 ATFINQSGKPSPMIMGCYGIGVSRIIAAAIEQNHDDKGIIFPESMAPFEVIITPI-GYDK 327

Query: 360 --VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  + +Y  L   G DV  DD G + G  F+ A+L+G P ++ V    + ++K E
Sbjct: 328 SSSVKEGVDDLYQLLIAEGYDVLLDDRGLRPGIMFSEAELIGIPHRITVSETTLKENKYE 387

Query: 418 IKHR 421
            K+R
Sbjct: 388 YKNR 391


>gi|196019376|ref|XP_002118967.1| hypothetical protein TRIADDRAFT_9363 [Trichoplax adhaerens]
 gi|190577501|gb|EDV18547.1| hypothetical protein TRIADDRAFT_9363 [Trichoplax adhaerens]
          Length = 408

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 182/423 (43%), Positives = 272/423 (64%), Gaps = 19/423 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y LP  ++   +A++ SHKLML++GMI Q S G+YSWLPLG   L+ +  +IR E
Sbjct: 1   MRLSNYLLPTTKDISSEAKLMSHKLMLKSGMIKQSSSGVYSWLPLGLNVLNKLANLIRVE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRY--DSYGK-EMLRLADRNDKAMIYGPTHEEVMTDI 117
            N+    E+ +P+LQ   +W +SGR   DS  K ++  + D+   A +  P+ EE + ++
Sbjct: 61  LNKINCHEIVLPSLQLLSIWEKSGRAVEDSDMKSQIFHIKDQKQTAYVLPPSGEEAVAEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F+S + SY+++    YQI  KFRDE+RPR GVMR++EFLMKDAYSFD+  E +  SY K+
Sbjct: 121 FKSSVHSYKDVSKILYQITWKFRDEIRPRHGVMRAKEFLMKDAYSFDVNKEKALISYEKI 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-TGETQVFCSKDFMDFPIPSEN 236
           F +YL +F ++GL+ IP+ A +G +GG+ SHEF VL+D  GE+ ++  ++         N
Sbjct: 181 FKAYLEVFKKIGLRVIPVLAPTGAMGGNYSHEFHVLSDKNGESTIYYQEEL-------NN 233

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              DD  SL      +   YA   + H   + D     K + ++ IEVGH+FY GTKYS 
Sbjct: 234 YLKDDEFSLKG----YEKFYAKEEEKH---VVDDCKTLKIIKSKSIEVGHLFYLGTKYSK 286

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            ++ T++ ++G+  + +MG YGIG  R++AA+IES HD KGIIWPD+++PFK+++INIKA
Sbjct: 287 SLNCTYQDSNGELQFPEMGCYGIGVTRLIAAIIESCHDDKGIIWPDAISPFKLAIINIKA 346

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D VCR+  +K+YA LS    DV +DD  +  G +FA  DL+G  L++I+G K  ++ KV
Sbjct: 347 EDSVCREFSDKLYANLSG-KYDVLYDDTNKSPGKKFADMDLIGINLEIIIGPKHAANKKV 405

Query: 417 EIK 419
           E+K
Sbjct: 406 ELK 408


>gi|99034562|ref|ZP_01314532.1| hypothetical protein Wendoof_01000659 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 339

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 181/358 (50%), Positives = 246/358 (68%), Gaps = 19/358 (5%)

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R  +KSY++LP   YQIQ KFRDE+
Sbjct: 1   GRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRDVVKSYKDLPLCLYQIQWKFRDEV 60

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +Y++IF R+G   I +RA++GPIG
Sbjct: 61  RPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKTYIKIFKRMGFTPIGVRADTGPIG 120

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G+LSHEF +LA+TGE+ ++    F      SE  + +DI SL SI       YA   D+H
Sbjct: 121 GNLSHEFHILANTGESTLYYDNKF------SELLESEDIESLKSI-------YAVADDMH 167

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + +      E   VS +GIE+GHIFYFG KYS PM A+    DGK+  + MGSYGIG  R
Sbjct: 168 DPETCPISQEQLNVS-KGIEIGHIFYFGDKYSKPMKASVTSQDGKNVNIHMGSYGIGVSR 226

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +V A+IE+ HD KGIIWP+ VAPF+I LIN++       +A +KIY  L     +V +DD
Sbjct: 227 LVGAIIEAFHDDKGIIWPEEVAPFRIGLINLQTK---VTEAADKIYKALK--SDEVLYDD 281

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               +G +F+  DL+G P Q+IVG K VS++ VE+K+R TG  ++M +EE IN+ S +
Sbjct: 282 TEGSVGVKFSRMDLIGLPWQIIVGKKAVSENIVEVKNRATGEVKEMQIEEAINHFSAK 339


>gi|206603805|gb|EDZ40285.1| Prolyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 422

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 191/432 (44%), Positives = 261/432 (60%), Gaps = 29/432 (6%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L E P +AE+ SH+LMLR G++ + + G+YS+LP+  +AL  V AIIREE N  G  E+ 
Sbjct: 11  LHEEPAEAEVVSHRLMLRAGLVRKLAGGVYSYLPMAVRALRKVEAIIREEMNSAGGQEVL 70

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P LQ +DLW ++GR+ +YG E+ RL DR+++A   GPTHEEV+TD+    I+SYR LPF
Sbjct: 71  LPALQPSDLWEKTGRWQAYGPELFRLHDRHERAFALGPTHEEVITDLVSQVIRSYRQLPF 130

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQIQ KFRDE RPRFG++R REF+MKDAYSF ++ E ++  Y +M  +Y RIF RLGL
Sbjct: 131 IAYQIQTKFRDERRPRFGILRGREFIMKDAYSFSVSEENARQIYTRMQEAYGRIFLRLGL 190

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               + A+SG IGG+LSHEF+V+AD+GE T V C K                  S  S +
Sbjct: 191 DHRMVEADSGLIGGNLSHEFMVMADSGEDTVVTCEK-----------------CSWASNI 233

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+  AP A    V    L          S   IEVGH+FY G KYS PM  TF  + GK+
Sbjct: 234 EK--APDARVCPVCGSVL---------ESRTAIEVGHVFYLGHKYSTPMETTFLDSAGKE 282

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               MG YGIG  R++AA IE SHD KGIIWP ++AP++ +++ +       R+    + 
Sbjct: 283 VPFFMGCYGIGVSRILAATIEQSHDDKGIIWPVAMAPYRTAVLPLGPGMSERREVLSLLE 342

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +  S    + ++DD   + G +F  ADL GFP QVI+G + V     E+K R TG R  +
Sbjct: 343 SLESLWPGESYFDDREIRPGMKFQDADLRGFPFQVILGDRHVDKGDGEVKIRRTGERLVL 402

Query: 430 SLEEVINYASHR 441
            L+++    S R
Sbjct: 403 PLKDIPALLSAR 414


>gi|124515073|gb|EAY56584.1| Prolyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 422

 Score =  343 bits (881), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 190/432 (43%), Positives = 258/432 (59%), Gaps = 29/432 (6%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L E P +AE+ SH+LMLR G + + + G+YS+LP+  +AL  V +IIREE N  G  E+ 
Sbjct: 11  LHEEPAEAEVVSHRLMLRAGFVRKLAGGVYSYLPMAVRALRKVESIIREEMNSAGGQEVL 70

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P LQ +DLW ++GR+ +YG E+ RL DR+++A   GPTHEEV+TD+    I+SYR LPF
Sbjct: 71  LPALQPSDLWEKTGRWQAYGPELFRLHDRHERAFALGPTHEEVITDLVSQIIRSYRQLPF 130

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E ++  Y +M  +Y RIF RLGL
Sbjct: 131 LAYQIQTKFRDERRPRFGILRGREFIMKDAYSFSASEENARQIYARMQEAYGRIFLRLGL 190

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               + A+SG IGG+LSHEF+V+AD+GE T V C K                  S  S +
Sbjct: 191 DHRMVEADSGLIGGNLSHEFMVMADSGEDTVVTCEK-----------------CSWASNI 233

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+  AP A    V    L          S   IEVGH+FY G KYS PM  TF  + GK+
Sbjct: 234 EK--APDARVCPVCGSAL---------TSRTAIEVGHVFYLGHKYSAPMETTFLDSAGKE 282

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               MG YGIG  R++AA IE SHD KGIIWP ++AP++ +++ +       R+    + 
Sbjct: 283 VPFFMGCYGIGVSRILAATIEQSHDDKGIIWPVAMAPYRTAVLPLGPGMSERREVLSLLE 342

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +  S    + ++DD   + G +F  ADL GFP QVI+G + V     E+K R TG R  +
Sbjct: 343 SLESLWPGEAYFDDREIRPGMKFQDADLRGFPFQVILGDRHVDKGNGEVKIRRTGERLVL 402

Query: 430 SLEEVINYASHR 441
            L ++    S R
Sbjct: 403 PLRDIPALLSAR 414


>gi|251772092|gb|EES52662.1| prolyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 429

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/450 (40%), Positives = 256/450 (56%), Gaps = 30/450 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++       E+P +AE  SH+LMLR G + + + G+Y +LP G + L  V  I+REE
Sbjct: 1   MRTTRLPYVTFHEDPAEAETVSHRLMLRGGYVRKVAGGLYDFLPFGARVLRRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A++W ++GR++ YGKE+ RL DR+D++   GPTHEEV+T++   
Sbjct: 61  MDRAGAFEILMPALQPAEMWEKTGRWEKYGKELFRLTDRHDRSFALGPTHEEVVTELASG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + E     Y  M  +
Sbjct: 121 LLNSYRQLPVTLYQIQTKFRDEMRPRFGLMRGREFVMKDAYSFARSKEEGAECYRIMQEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDF 239
           Y RIF RLGL    + A++G IGG  SHEF+VLA +GE T VFC                
Sbjct: 181 YFRIFARLGLSVRMVEADTGNIGGYSSHEFMVLAPSGEDTVVFCG--------------- 225

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                        +  YA+  ++        L +        IEVGH+F  G +YS PM 
Sbjct: 226 -------------SCRYASNVELAGAATHCPLCQAPLERTTAIEVGHVFDLGDRYSAPME 272

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A F   DG++    MG YGIG  R++AA IE SHD  GIIWP ++APF ++++ +   D 
Sbjct: 273 AGFLDPDGRETLFHMGCYGIGVSRLLAAAIEQSHDDAGIIWPTAMAPFAVAVLPLGGRDA 332

Query: 360 VCRDACEKIYARL-SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   +I   L  +   +V  DD   + G +FA ADL GFP+QVI+G K + +++ EI
Sbjct: 333 ELSEKALRIAGLLEERFPEEVLVDDRDLRAGVKFADADLCGFPIQVILGEKGLRENRAEI 392

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           K R +G R  + L  +  + +    +   V
Sbjct: 393 KVRSSGERNTVDLSALSEWIADHLGSGGAV 422


>gi|254730106|ref|ZP_05188684.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 213

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 181/210 (86%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           YLR F R+GL++IPMRA++GPIGGDLSHEF
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEF 213


>gi|260757796|ref|ZP_05870144.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|260668114|gb|EEX55054.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 210

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 181/210 (86%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           YLR F R+GL++IPMRA++GPIGGDLSHEF
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEF 210


>gi|78777058|ref|YP_393373.1| prolyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|114152275|sp|Q30S93|SYP_SULDN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78497598|gb|ABB44138.1| Prolyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 435

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 172/449 (38%), Positives = 255/449 (56%), Gaps = 34/449 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRS+ F+P  +E P DA + SHK ++R G I+Q   G+Y++LPLG+  L+ + A+++EE
Sbjct: 1   MRRSRAFIPTAKEAPSDATLPSHKFLVRGGFINQQGAGLYNFLPLGKIVLEKIRAVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +    LW  SGR ++ GKEMLR+ DR+    +  PT+EE M ++ ++
Sbjct: 61  LDLAGCNEVQLSFVTPIGLWERSGRSEAMGKEMLRINDRHQNEFVLSPTNEEAMVELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  KFRDE RPR+G++R REFLMKD YSF  + +     ++ M  +
Sbjct: 121 RVTSYKDLPLNLYQINTKFRDEARPRYGLLRGREFLMKDGYSFHSSTQDMIREFDLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTD- 238
           Y +IF RLGL    + A+SG IGGD S EF VLAD+GE T + C     ++    E  D 
Sbjct: 181 YKKIFTRLGLDFRVVAADSGAIGGDGSKEFHVLADSGEDTLIVCQS--CNYGANIETIDE 238

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE---NKRVSA-------RGIEVGHIF 288
           F D I                 D  NEK ++ L E   +++ S        +GIEVGHIF
Sbjct: 239 FKDKI-----------------DELNEKSYEELKELKIDQKCSCGANLHFKKGIEVGHIF 281

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GTKYS  + A F   +G+    +M ++GIG  R+VAA+IE +HD  G IW    AP+ 
Sbjct: 282 QLGTKYSAALEANFSDENGRSKPFEMATFGIGVSRLVAAIIEQNHDESGCIWTKESAPYI 341

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++     D+      E +YA+L     DV +DD  E+ G +   A+L+GFP  +I+G 
Sbjct: 342 VNIMVSNVKDEAQMSLGEDLYAKLRAAKVDVIFDDTKERFGFKMKDAELIGFPYTLIIG- 400

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           K +    V+I  R T  +E +S+E    Y
Sbjct: 401 KELEGGLVQIFDRKT--KESISVESSSAY 427


>gi|254458440|ref|ZP_05071865.1| prolyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207084748|gb|EDZ62035.1| prolyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 434

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/434 (38%), Positives = 248/434 (57%), Gaps = 30/434 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRS+ F+P  +E P DA + SH+ ++R G I+Q   G+Y++LPLG+  L+ +  I++EE
Sbjct: 1   MRRSRAFIPTTKEVPNDATLPSHQFLVRGGFINQQGAGLYNFLPLGKIVLEKIRTIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +    LW  SGR D+ GKEMLR+ DR+    +  PT+EE M ++ ++
Sbjct: 61  LDMAGCNEVQLSFVTPIGLWDRSGRADAMGKEMLRIQDRHQNDFVLSPTNEEAMVELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  KFRDE RPR+G++R REFLMKD YSF  + E     ++ M  +
Sbjct: 121 RVTSYKDLPLNLYQINTKFRDEARPRYGLLRGREFLMKDGYSFHASTEDMIREFDLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    ++A+SG IGG+ S EF VLAD+GE          D  I  E+ D+ 
Sbjct: 181 YKKIFTRLGLDFRVVQADSGAIGGEGSKEFHVLADSGE----------DTIIVCESCDYG 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS-----------ARGIEVGHIFY 289
              ++ +I +          D  NEK ++ L + K +S            +GIEVGHIF 
Sbjct: 231 --ANIETIFDN-----EEEVDALNEKTYEEL-QTKEISEKCSCGGNLSFKKGIEVGHIFQ 282

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  + A F   +GK    +M ++GIG  R+VA+VIE +HD  G IW    AP+ I
Sbjct: 283 LGTKYSSALEANFSDENGKPRPFEMATFGIGVSRLVASVIEQNHDENGCIWTKETAPYTI 342

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +++     D+      E++Y +L     +  +DD  E+ G +   A+L+GFP  VI+G K
Sbjct: 343 NIMVSNIKDETQMTLGEELYLKLLGENVEAMFDDRKERFGFKMKDAELIGFPYTVIIG-K 401

Query: 410 FVSDSKVEIKHRLT 423
            + +  V++  R T
Sbjct: 402 ELDNGLVQVYDRKT 415


>gi|260596616|ref|YP_003209187.1| prolyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260215793|emb|CBA28231.1| Prolyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 572

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/314 (47%), Positives = 197/314 (62%), Gaps = 29/314 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR D+A + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWEQYGPELLRFVDRGDRAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQQTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +            S+ +DF 
Sbjct: 181 YSKIFTRMGLDFRPVQADTGSIGGSASHEFQVLAQSGEDDIVF----------SDTSDFA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   V   T   AAT ++    L D+   N +  A  +E         ++SLP+  
Sbjct: 231 ANIELAEAVAPLTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFSLPVEK 276

Query: 301 T-----FKGADGKD 309
           T      K A+G D
Sbjct: 277 TVKTLLVKAAEGSD 290



 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 113/182 (62%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSDALKASVQGEDGRNQVLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDDRGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYAELRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  V++G + + + ++E K+R  G ++ +   +++
Sbjct: 504 GIDVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDEIEYKYRRDGEKKMIKTGDIL 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|167586051|ref|ZP_02378439.1| prolyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 578

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/229 (58%), Positives = 173/229 (75%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNEFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   +G   SY KM+ +
Sbjct: 121 QIRSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDADGLAESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL+  P+ A+SG IGG+ SHEF V+ADTGE  + +C S DF
Sbjct: 181 YVRIFTRLGLEFRPVAADSGSIGGNFSHEFHVIADTGEDAIAYCPSSDF 229



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N +  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADIRNVQKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFIDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D +GIIWP+S+APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDRGIIWPESIAPFEVVLCPM-GYDRSDAVREATDKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 501 ELAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKLEYQGR 551


>gi|156935287|ref|YP_001439203.1| prolyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|166980122|sp|A7MI22|SYP_ENTS8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156533541|gb|ABU78367.1| hypothetical protein ESA_03144 [Cronobacter sakazakii ATCC BAA-894]
          Length = 572

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/303 (47%), Positives = 193/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR D+A + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWEQYGPELLRFVDRGDRAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQQTYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +            S+ +DF 
Sbjct: 181 YSKIFTRMGLDFRPVQADTGSIGGSASHEFQVLAQSGEDDIVF----------SDTSDFA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   V   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAVAPLTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 113/182 (62%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSDALKASVQGEDGRNQVLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYAELRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  V++G + + + ++E K+R  G ++ +   +++
Sbjct: 504 GIDVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDEIEYKYRRDGEKKMIKTGDIL 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|242278211|ref|YP_002990340.1| prolyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259511591|sp|C6BYX7|SYP_DESAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|242121105|gb|ACS78801.1| prolyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 580

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/226 (56%), Positives = 170/226 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P +AE+ SHKL++R GMI + + GIY++LPLG K+++ V AI+REE
Sbjct: 1   MRLSRYYIPTLKEDPSEAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLKSVNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  DLW E+GR+D YGKE+LR+ DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLMPMVQPGDLWQETGRWDYYGKELLRVKDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EVKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDEAGAEESYRGMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P++A+SG IGGD SHEF VLADTGE  +   KD
Sbjct: 181 YKKAFSRIGLNFRPVQADSGAIGGDFSHEFHVLADTGEDTIAVCKD 226



 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 101/153 (66%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  G+KYS  M ATF   +GK   + MG YGIG  R+VA+ IE ++D  G I
Sbjct: 407 KGIEVGHVFKLGSKYSKSMEATFLDENGKTQPMVMGCYGIGVSRIVASAIEQNNDENGAI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P ++APF++ +I++   D+   +  E+ Y  L ++G D  +DD  E+ G +FA ADL+G
Sbjct: 467 FPPTIAPFELCVISLGGKDEAVNEKAEEFYNELMEMGIDAAYDDRKERPGVKFADADLIG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +P+Q+++G K + +  VE K+R TG + ++ LE
Sbjct: 527 YPMQLVIGGKGLKNGIVEAKNRKTGEKIELPLE 559


>gi|239907072|ref|YP_002953813.1| prolyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259511592|sp|C4XTD0|SYP_DESMR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239796938|dbj|BAH75927.1| prolyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 575

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/224 (59%), Positives = 168/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E P +AE+ SHKL+LR GMI + + GIY++LPLG KAL+NV  I+REE
Sbjct: 1   MRLSRYYAPTLKETPAEAEVISHKLLLRAGMIRKLTAGIYTYLPLGLKALNNVAKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR+D YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWDFYGRELLRFVDRHDRESCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDSGADASYWGMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RIF RLGLK   + A+SG IGG  SHEF+VLADTGE T V C
Sbjct: 181 YARIFKRLGLKFRAVAADSGAIGGSFSHEFMVLADTGEDTIVAC 224



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 98/153 (64%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  G KYS  ++ATF    GK+ ++ MG YGIG  R+VA+ IE +HD  GI+
Sbjct: 403 KGIEVGHVFKLGLKYSKALNATFLDEAGKEQFMIMGCYGIGVSRIVASAIEQNHDDGGIV 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P ++APF+ +LIN+   D+      ++IYA L+  G +   DD  E+ G +F  ADL+G
Sbjct: 463 FPPTIAPFEAALINLSPKDETACAKADEIYAALTAAGIETLLDDRDERPGVKFKDADLMG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            P+Q+ +G K ++   VE K R TG + ++ LE
Sbjct: 523 HPIQLTLGGKGLARGIVETKDRRTGEKGELPLE 555


>gi|322420273|ref|YP_004199496.1| prolyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126660|gb|ADW14220.1| prolyl-tRNA synthetase [Geobacter sp. M18]
          Length = 573

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/225 (57%), Positives = 167/225 (74%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR+D YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWDFYGKELLRFKDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR +P   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EIRSYRQMPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
           Y RIF R GLK   + A++G IGG+ SHEF+VLAD+GE  +  CS
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGNYSHEFMVLADSGEDAIVSCS 225



 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 261 DVHNEKLFDSLP--ENKRVSA-RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N  + D+ P  E+ ++   RGIEVGH+F  GTKYS  ++A+F  A+GK+  + MG Y
Sbjct: 383 DIRNVVIGDACPRCESGKLEIWRGIEVGHVFKLGTKYSKALNASFLDANGKEQIIFMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R VAA IE +HD  GII+P  +APF   +  + A +   + A E+IY+ L + G 
Sbjct: 443 GIGIGRTVAACIEQNHDENGIIFPIPIAPFHCIVSALSAKEDEVKAASEQIYSELLEAGV 502

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +V  DD  E+ G +F  ADL+G PL+++VG+K + D KVE+K R +G
Sbjct: 503 EVLLDDRDERPGFKFKDADLIGIPLRLVVGAKNLVDGKVELKERRSG 549


>gi|253699963|ref|YP_003021152.1| prolyl-tRNA synthetase [Geobacter sp. M21]
 gi|259511598|sp|C6E496|SYP_GEOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|251774813|gb|ACT17394.1| prolyl-tRNA synthetase [Geobacter sp. M21]
          Length = 573

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 129/225 (57%), Positives = 167/225 (74%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V AI+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWEFYGKELLRFNDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EVRSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
           Y RIF R GLK   + A++G IGG+ SHEF+VLAD+GE  +  CS
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGNYSHEFMVLADSGEDAIVSCS 225



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 108/178 (60%), Gaps = 3/178 (1%)

Query: 261 DVHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N  + D+ P     K    RGIEVGH+F  GTKYS  + ATF  ADGK+  + MG Y
Sbjct: 383 DIRNVVIGDACPRCDSGKLEIWRGIEVGHVFKLGTKYSKALKATFLDADGKEQTIFMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R VAA IE +HD  GII+P  +APF+  + ++   +   + A E IY  L + G 
Sbjct: 443 GIGVGRTVAACIEQNHDENGIIFPIPIAPFQCIISSLSVKEDEVKAASESIYQELLEAGI 502

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +V  DD  E+ G +F  ADL+G PL+++VG+K +++ KVE+K R +G  E + + E I
Sbjct: 503 EVLLDDRDERPGFKFKDADLIGIPLRIVVGAKALAEGKVELKERRSGEVEVLPIAEAI 560


>gi|323700409|ref|ZP_08112321.1| prolyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323460341|gb|EGB16206.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 580

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 168/221 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P DAE+ SHKL++R GMI + + GIY++LPLG +A++ V  I+REE
Sbjct: 1   MRLSRYYIPTLKEDPADAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLRAINKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +PT+Q ADLW E+GR+D YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLLPTVQPADLWRETGRWDYYGKELLRFKDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFD    G++ SY  MF +
Sbjct: 121 EIKSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDGYSFDKDEAGAEQSYWDMFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y   F R+GL+  P++A+SG IGG  SHEF+VLA+TGE  +
Sbjct: 181 YKAAFTRIGLRFKPVQADSGAIGGSFSHEFMVLAETGEDTI 221



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 102/153 (66%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  G KYS  M ATF   +GK  Y+ MG YGIG  R+VA+ IE + D  G  
Sbjct: 406 KGIEVGHVFKLGLKYSKKMEATFLDENGKSQYMIMGCYGIGVSRIVASAIEQNFDENGCC 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P S+APF++ LI++   DQ   D  E++YA L K+G DV +DD GE+ G +FA ADL+G
Sbjct: 466 FPPSIAPFEVCLISLGGKDQDVADKAEELYAELMKLGVDVAFDDRGERPGVKFAEADLIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +P+Q+++G K + +  +E K R TG + ++ L+
Sbjct: 526 YPMQLVLGGKGLKNGIIEAKDRKTGEKVELPLD 558


>gi|197119263|ref|YP_002139690.1| prolyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|226701292|sp|B5EIT9|SYP_GEOBB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|197088623|gb|ACH39894.1| prolyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 573

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/225 (57%), Positives = 166/225 (73%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V AI+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWEFYGKELLRFNDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EVRSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +  CS
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGSYSHEFMVLADSGEDAIVSCS 225



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 3/178 (1%)

Query: 261 DVHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N  + D+ P     K    RGIEVGH+F  GTKYS  + ATF  ADGK+  + MG Y
Sbjct: 383 DIRNVVIGDACPRCDSGKLEIWRGIEVGHVFKLGTKYSKALKATFLDADGKEQIIFMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R VAA IE +HD  GII+P  +APF+  + ++ A +   + A E IY  L + G 
Sbjct: 443 GIGVGRTVAACIEQNHDENGIIFPIPIAPFQCIISSLSAKEDEVKAASESIYQELLEAGI 502

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +V  DD  E+ G +F  ADL+G PL+++VG+K +++ KVE+K R +G  E + + E I
Sbjct: 503 EVLLDDRDERPGFKFKDADLIGIPLRIVVGAKALAEGKVELKERRSGEVEVLPIAEAI 560


>gi|303248073|ref|ZP_07334338.1| prolyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302490472|gb|EFL50380.1| prolyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 575

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 172/231 (74%), Gaps = 3/231 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E P +AE+ SHKL+LR GMI + + GIY++LPLG KAL+NV  I+REE
Sbjct: 1   MRLSRYYAPTLKETPAEAEVVSHKLLLRAGMIRKLTAGIYTYLPLGLKALNNVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR++ YG+E+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWEFYGRELLRFVDRHEREFCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EIRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDAGADASYWAMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDF 230
           Y+RIF RLGLK   + A+SG IGG  SHEF+VLA+TGE T  +C  D  DF
Sbjct: 181 YIRIFERLGLKFRAVSADSGAIGGSFSHEFMVLAETGEDTIAYC--DACDF 229



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 101/154 (65%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVGH+F  G KYS  ++ATF    GK+ ++ MG YGIG  R+VAA IE ++D  GI
Sbjct: 402 AKGIEVGHVFKLGLKYSKSLNATFLDEAGKEQFMIMGCYGIGVSRIVAACIEQNNDASGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           ++P ++APF+++L+N+ A D       +++Y  L+  G +   DD  E+ GS+F  ADL+
Sbjct: 462 VFPPAIAPFEVALLNLNAKDAEASAKADELYDALTAAGIETLLDDREERPGSKFKDADLM 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           GFP+Q+ +G K ++   VE K R TG + ++ L+
Sbjct: 522 GFPIQLTLGGKGLARGIVETKDRRTGEKGELPLD 555


>gi|317154070|ref|YP_004122118.1| prolyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944321|gb|ADU63372.1| prolyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 579

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 127/225 (56%), Positives = 171/225 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P DAE+ SHKL++R GMI + + GIY++LPLG ++++ V  I+REE
Sbjct: 1   MRLSRYYIPTLKEDPADAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLRSINKVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+S+P +Q ADLW E+GR+D YGKE+LRL DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAMEVSMPMVQPADLWQETGRWDYYGKELLRLKDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EIKSYKQLPINLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFDRDEAGAETSYWAMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y   F R+GL+  P++A+SG IGGD SHEF+VLADTGE  +   K
Sbjct: 181 YKAAFSRIGLRFKPVQADSGAIGGDFSHEFMVLADTGEDTIASCK 225



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 92/145 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  G KYS  M ATF   +GK  Y+ MG YGIG  R+VA+ IE ++D  G  
Sbjct: 406 KGIEVGHVFKLGLKYSKKMEATFLDENGKTQYMVMGCYGIGVSRIVASAIEQNNDEAGCC 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P S+APF+  LI++   D+       ++Y +L  +G D  +DD  E+ G +FA ADL+G
Sbjct: 466 FPPSIAPFEAVLISLGGKDEAVDAKAAELYEQLRVLGVDACFDDRKERPGVKFAEADLIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
           +P+Q+++G K ++   VE K R TG
Sbjct: 526 YPMQLVLGGKGLASGIVEAKDRKTG 550


>gi|78222566|ref|YP_384313.1| prolyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|114152198|sp|Q39VY6|SYP_GEOMG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78193821|gb|ABB31588.1| Prolyl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 570

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 166/221 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVVSHKLMLRAGMIRKLAAGIYNYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P++Q A+LW ES R++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPSVQPAELWQESKRWEQYGKELLRFKDRKDAEFCLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD++ E +  SY+KM+ +
Sbjct: 121 EVKSYRQLPLNLYQVQSKFRDEIRPRFGLMRGREFIMKDAYSFDVSSEAADTSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +
Sbjct: 181 YRRIFQRCGLKFRAVEADTGSIGGSSSHEFMVLADSGEDAI 221



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 100/157 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GTKYS  + ATF  ADGK+  + MG YGIG  R VAA IE +HD  GII
Sbjct: 402 RGIEVGHVFKLGTKYSESLRATFLDADGKEQVIFMGCYGIGISRTVAACIEQNHDADGII 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF   +  +   D     AC+++Y  L+ VG +V +DD  E+ GS+F  ADL+G
Sbjct: 462 FPIPIAPFHCIISAVSTKDAEVVAACDELYRALTAVGVEVLFDDRDERPGSKFKDADLIG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PL+++VGSK +++ KVE+K R  G    + L E + 
Sbjct: 522 IPLRIVVGSKNLAEGKVELKSRKGGEVSLLPLAEAVE 558


>gi|283850295|ref|ZP_06367584.1| prolyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283574321|gb|EFC22292.1| prolyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 575

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/224 (58%), Positives = 169/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E+P +AE+ SHKL+LR GMI + + GIY++LPLG +A++NV  I+REE
Sbjct: 1   MRLSRYYAPTLKESPAEAEVISHKLLLRAGMIRKLTAGIYTYLPLGLRAVNNVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR+D YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWDFYGRELLRFVDRHDRESCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  MF +
Sbjct: 121 EIRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDAGADASYKSMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RIF RLGLK   + A+SG IGG  SHEF+VLA+TGE T V C
Sbjct: 181 YARIFTRLGLKFRAVSADSGAIGGSFSHEFMVLAETGEDTIVAC 224



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 98/153 (64%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  G KYS  +SATF    GK+ ++ MG YGIG  R+VAA IE ++D  GI+
Sbjct: 403 KGIEVGHVFKLGLKYSKALSATFLDEAGKEQFMIMGCYGIGVSRIVAACIEQNNDASGIV 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF+ +LIN+   D+      ++IYA L+K G +   DD  E+ G +F  ADL+G
Sbjct: 463 FPPPIAPFEAALINLSPKDETASAKADEIYAALTKAGVETLLDDRDERPGVKFKDADLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            P+Q+ +G K ++   VE K R TG + ++ LE
Sbjct: 523 LPIQLTLGGKGLARGIVETKDRRTGEKGELPLE 555


>gi|161525965|ref|YP_001580977.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189349316|ref|YP_001944944.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221202408|ref|ZP_03575440.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221208132|ref|ZP_03581137.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221213248|ref|ZP_03586223.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|226699126|sp|A9AI56|SYP_BURM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160343394|gb|ABX16480.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189333338|dbj|BAG42408.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221166700|gb|EED99171.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221172035|gb|EEE04477.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221177685|gb|EEE10100.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 578

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 170/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAVELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRNVKKGDPSPDGKGAIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 LMGCYGIGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 ELTAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|114152266|sp|Q2LTR7|SYP_SYNAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 578

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 166/225 (73%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP  +E P DAE+ SH+LMLR GMI + S GIYS+LPLG + L  V  IIREE
Sbjct: 1   MRYSEMFLPTEREIPSDAEVVSHQLMLRAGMIRKLSAGIYSYLPLGYRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVYLPMVQPAELWQESGRWEHYGKELLRFRDRHDREYCLGPTHEEVITDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IK+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD   EG++ SY KMF +
Sbjct: 121 EIKTYRQLPKNLYQIQTKFRDEIRPRFGVMRGREFGMKDAYSFDADEEGAEISYQKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y RIF R GL+  P+ A+SG IGG  SHEF+V+AD+GE   VFC+
Sbjct: 181 YKRIFARCGLRFRPVEADSGTIGGSFSHEFMVMADSGEDGLVFCA 225



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 110/180 (61%), Gaps = 2/180 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           +A +D+   +  DS P  +     ARGIEVGH+F  GTKYS  M A++   +GK+  + M
Sbjct: 380 SAFADLKVARETDSCPRCQGALKFARGIEVGHVFKLGTKYSKAMGASYLDKNGKEQIMIM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R VAA IE +HD  GI+WP  ++P+++ +  +  +D+   +  E++Y  L+ 
Sbjct: 440 GCYGIGTGRTVAACIEQNHDENGIVWPMPISPYQVIITPVNMNDKALAETAERLYESLAG 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G +F  ADL+G P++V VG K +++ KVE++ R TG   D+ ++ V
Sbjct: 500 KGAEVLLDDRDERAGVKFKDADLIGIPIRVTVGPKKLAEGKVEVRLRDTGETSDVQVDSV 559


>gi|85859447|ref|YP_461649.1| prolyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85722538|gb|ABC77481.1| prolyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 597

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 166/225 (73%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP  +E P DAE+ SH+LMLR GMI + S GIYS+LPLG + L  V  IIREE
Sbjct: 20  MRYSEMFLPTEREIPSDAEVVSHQLMLRAGMIRKLSAGIYSYLPLGYRVLRKVEQIIREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 80  MNRAGAQEVYLPMVQPAELWQESGRWEHYGKELLRFRDRHDREYCLGPTHEEVITDLVRH 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IK+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD   EG++ SY KMF +
Sbjct: 140 EIKTYRQLPKNLYQIQTKFRDEIRPRFGVMRGREFGMKDAYSFDADEEGAEISYQKMFEA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y RIF R GL+  P+ A+SG IGG  SHEF+V+AD+GE   VFC+
Sbjct: 200 YKRIFARCGLRFRPVEADSGTIGGSFSHEFMVMADSGEDGLVFCA 244



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 110/180 (61%), Gaps = 2/180 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           +A +D+   +  DS P  +     ARGIEVGH+F  GTKYS  M A++   +GK+  + M
Sbjct: 399 SAFADLKVARETDSCPRCQGALKFARGIEVGHVFKLGTKYSKAMGASYLDKNGKEQIMIM 458

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R VAA IE +HD  GI+WP  ++P+++ +  +  +D+   +  E++Y  L+ 
Sbjct: 459 GCYGIGTGRTVAACIEQNHDENGIVWPMPISPYQVIITPVNMNDKALAETAERLYESLAG 518

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G +F  ADL+G P++V VG K +++ KVE++ R TG   D+ ++ V
Sbjct: 519 KGAEVLLDDRDERAGVKFKDADLIGIPIRVTVGPKKLAEGKVEVRLRDTGETSDVQVDSV 578


>gi|167564170|ref|ZP_02357086.1| prolyl-tRNA synthetase [Burkholderia oklahomensis EO147]
 gi|167571291|ref|ZP_02364165.1| prolyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 578

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 172/229 (75%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD   EG K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDRDHEGLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+R+F R+GL+  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRVFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVIADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSEAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGIIWP+++APF++ L  +  +D+    R+A +++YA
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIIWPEAIAPFEVVLCPM-GYDRSDAVREAADQLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D KVE + R
Sbjct: 501 ALAAAGVDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKVEYQGR 551


>gi|325528042|gb|EGD05262.1| prolyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 578

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 169/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLNESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 LMGCYGIGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            LS  G DV  DD GE+ G  FA  +L+G P +V++G + + + K+E + R
Sbjct: 501 ELSAAGIDVILDDRGERPGVMFADWELIGVPHRVVIGERGLKEGKIEYQGR 551


>gi|115350544|ref|YP_772383.1| prolyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122324080|sp|Q0BIH4|SYP_BURCM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115280532|gb|ABI86049.1| prolyl-tRNA synthetase [Burkholderia ambifaria AMMD]
          Length = 578

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 133/229 (58%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV + K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRDVKKGDPSPDGKGTIDICRGIEVGHVFQLGTKYSDAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +  +D+  + R+A +K+YA
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDMVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 501 ELAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGR 551


>gi|170699968|ref|ZP_02890995.1| prolyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170135116|gb|EDT03417.1| prolyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 578

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 5/167 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +DV + K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   + MG 
Sbjct: 386 VADVRDVKKGDPSPDGKGTIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSK 374
           YG+G  R++ A IE + D KGIIWP+S+APF++ L  +  +D+  + R+A +K+YA L+ 
Sbjct: 446 YGVGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDMVREAADKLYAELAA 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 505 AGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGR 551


>gi|167842004|ref|ZP_02468688.1| prolyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 578

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MRASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFSRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVIADVRNVKAGDPSPDGKGVLDICRGIEVGHVFQLGTKYSDAMGATFIDESGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A + +YA
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADTLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 DLVAAGVDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|39996560|ref|NP_952511.1| prolyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|81832056|sp|Q74D59|SYP_GEOSL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39983441|gb|AAR34834.1| prolyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298505576|gb|ADI84299.1| prolyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 570

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/226 (56%), Positives = 167/226 (73%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + YF+P L+E P DAE+ SH+LMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYTNYFIPTLKETPSDAEVVSHQLMLRAGMIRKLAAGIYNYLPLGLRSIRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P++Q A+LW ES R++ YGKE+LR  DR D     GPTHEEV+TDI R 
Sbjct: 61  MDRAGAIELLMPSVQPAELWQESTRWEQYGKELLRFKDRKDAEFCLGPTHEEVVTDIVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR +PF  YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    S  SY+KM+ +
Sbjct: 121 EVKSYRQMPFNLYQIQAKFRDEIRPRFGLMRGREFIMKDAYSFDVDSSASDLSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +  C++
Sbjct: 181 YRRIFQRCGLKFRAVEADTGSIGGSSSHEFMVLADSGEDAIVSCTQ 226



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/152 (48%), Positives = 96/152 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GTKYS  + AT+  ADGK+  + MG YGIG  R VAA IE +HD  GII
Sbjct: 402 RGIEVGHVFKLGTKYSEALRATYLDADGKEQIIFMGCYGIGISRTVAACIEQNHDADGII 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF   +  +   D     ACE +Y  L   G +V +DD  E+ G +F  ADL+G
Sbjct: 462 FPIPIAPFHCIVSAVNTKDAEVMAACESLYLDLRAAGVEVLFDDRDERPGIKFKDADLIG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            PL+++VGSK ++D KVE+K R TG  E + L
Sbjct: 522 IPLRLVVGSKNLADGKVELKSRRTGEVELLPL 553


>gi|294634711|ref|ZP_06713243.1| proline--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291091887|gb|EFE24448.1| proline--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 572

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/226 (56%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S D
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSTD 226



 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKY+  ++AT +G DG++  + MG YGIG  RVVAA IE +HD +GII
Sbjct: 407 RGIEVGHIFQLGTKYTEALNATVQGEDGRNQLMTMGCYGIGVTRVVAAAIEQNHDERGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H     +D  E++Y  L   G +V  DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVAILPMNMHKSFRVKDVAERLYDALRLKGIEVLLDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P  +++G + + +++VE K+R  G +  +SL+E+
Sbjct: 527 GIPYTIVIGDRNLDNNEVEYKYRRDGEKLMISLDEI 562


>gi|171316236|ref|ZP_02905459.1| prolyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171098650|gb|EDT43447.1| prolyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 578

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV + K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRDVKKGDPSPDGKGTIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D +GIIWP+S+APF++ L  +  +D+  + R+A +K+YA
Sbjct: 442 LMGCYGVGVTRILGAAIEQNFDDRGIIWPESIAPFEVVLCPM-GYDRSDMVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 501 ELTAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGR 551


>gi|120602767|ref|YP_967167.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|152112308|sp|A1VE74|SYP_DESVV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120562996|gb|ABM28740.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 574

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 128/225 (56%), Positives = 166/225 (73%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+++P+G +AL+ V AI+REE
Sbjct: 1   MRWSRCYIPTLKEAPSDAEVVSHKLLVRAGMIRKLTSGIYTFMPMGLRALNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVLMPMVQPADLWQETGRWEFYGKELLRFRDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDQAGCDESYKAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y RIF RLGL+   + A+SG IGG  SHEF+VLADTGE T   C+
Sbjct: 181 YQRIFSRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTLAVCT 225



 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 97/153 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  G KYS  M+ATF   +GK+  + MG YGIG  RVVA+ IE ++DG GI+
Sbjct: 403 KGIEVGHVFKLGLKYSKSMNATFLDENGKEQVMVMGCYGIGVSRVVASCIEQNNDGDGIV 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +AP++++L+ +   ++       +I + L   G DV  DD  E+ G +F  ADL+G
Sbjct: 463 FPPPIAPYEVALLLLDPKNEEAAAKAAEIESFLEAEGHDVLLDDRDERPGVKFKDADLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            P Q+++G K ++   VE K+R +G + ++ +E
Sbjct: 523 SPYQLVLGGKGLARGVVEAKNRRSGEKTELPVE 555


>gi|46579756|ref|YP_010564.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|81830448|sp|Q72CD8|SYP_DESVH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46449171|gb|AAS95823.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233547|gb|ADP86401.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 574

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 128/225 (56%), Positives = 166/225 (73%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+++P+G +AL+ V AI+REE
Sbjct: 1   MRWSRCYIPTLKEAPSDAEVVSHKLLVRAGMIRKLTSGIYTFMPMGLRALNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVLMPMVQPADLWQETGRWEFYGKELLRFRDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDQSGCDESYKAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y RIF RLGL+   + A+SG IGG  SHEF+VLADTGE T   C+
Sbjct: 181 YQRIFSRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTLAVCT 225



 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 97/153 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  G KYS  M+ATF   +GK+  + MG YGIG  RVVA+ IE ++DG GI+
Sbjct: 403 KGIEVGHVFKLGLKYSKSMNATFLDENGKEQVMVMGCYGIGVSRVVASCIEQNNDGDGIV 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +AP++++L+ +   ++       +I + L   G DV  DD  E+ G +F  ADL+G
Sbjct: 463 FPPPIAPYEVALLLLDPKNEEAAAKAAEIESFLEAEGHDVLLDDRDERPGVKFKDADLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            P Q+++G K ++   VE K+R +G + ++ +E
Sbjct: 523 SPYQLVLGGKGLARGVVEAKNRRSGEKTELPVE 555


>gi|134294675|ref|YP_001118410.1| prolyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166980110|sp|A4JBC2|SYP_BURVG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134137832|gb|ABO53575.1| prolyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 578

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 168/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPDVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +     ++ R+A +K+YA 
Sbjct: 442 LMGCYGVGVTRILGAAIEQNFDDKGIIWPESIAPFELVLCPMGYDRSEMVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D KVE + R
Sbjct: 502 LTAAGVDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKVEYQGR 551


>gi|206561773|ref|YP_002232538.1| prolyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|226699125|sp|B4E5W6|SYP_BURCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|198037815|emb|CAR53759.1| prolyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 578

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 168/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C
Sbjct: 181 YVRIFSRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPDVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D +GIIWP+S+APF++ L  +  +D+  + R+  +K+YA
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDRGIIWPESIAPFEVVLCPM-GYDRSDLVRETADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 501 ELVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGR 551


>gi|317484633|ref|ZP_07943536.1| prolyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316924107|gb|EFV45290.1| prolyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 574

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 127/225 (56%), Positives = 169/225 (75%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++++P L+E P DAE+ SHKL++R GMI + + GIY+WLPLG + L+    I+REE
Sbjct: 1   MRWSQWYIPTLKEAPGDAEVISHKLLIRAGMIRKLTSGIYTWLPLGLRTLNKAANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +PT+Q ADLW ESGR++ YGKE+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAQEILMPTVQPADLWRESGRWEHYGKELLRFKDRHERDYCLGPTHEEVVTDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REFLMKDAYSFD    G+  SY KMF +
Sbjct: 121 EVRSYRQLPMNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDRDDAGADISYKKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y +IF R+ L+  P+ A+SG IGG+ SHEF+VLA+TGE T  +C+
Sbjct: 181 YKKIFSRMALQFRPVEADSGSIGGNFSHEFMVLAETGEDTIAYCT 225



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 111/180 (61%), Gaps = 2/180 (1%)

Query: 255 PYAATSDVHNEKLFDSLPE-NKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P  A +D+ +    D  P   K V+ A+GIEVGH+F  GTKYS  ++A +   +GK+  +
Sbjct: 376 PAFAYADLRSIAEGDVCPRCGKPVAFAKGIEVGHVFKLGTKYSTALNAIYLDENGKEQTI 435

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE ++DG GI +P  +APF + L+N+   +       +++Y  L
Sbjct: 436 IMGCYGIGVSRVVAACIEQNNDGDGIAFPPPLAPFDLELLNLDPKNADTAAKADELYDLL 495

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + +G DV  DD  E+ G +F  ADL+G P+QV+VG K ++   VE+K+R TG + ++ +E
Sbjct: 496 TGMGLDVLLDDREERPGVKFKDADLVGLPMQVVVGGKGLARGIVEVKNRKTGEKGELPVE 555


>gi|254253311|ref|ZP_04946629.1| Prolyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895920|gb|EAY69800.1| Prolyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 578

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLDESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPDVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G  FA  +L+G P +V++G + + + K+E + R
Sbjct: 501 ELVAAGIDVILDDRGERPGVMFADWELIGVPHRVVIGERGLKEGKIEYQGR 551


>gi|172059576|ref|YP_001807228.1| prolyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|226699123|sp|B1YSV1|SYP_BURA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171992093|gb|ACB63012.1| prolyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 578

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV + K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRDVKKGDPSPDGKGTIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D +GIIWP+S+APF++ L  +  +D+  + R+A +K+YA
Sbjct: 442 LMGCYGVGVTRILGAAIEQNFDDRGIIWPESIAPFEVVLCPM-GYDRSDMVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 501 ELAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGR 551


>gi|148264838|ref|YP_001231544.1| prolyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146398338|gb|ABQ26971.1| prolyl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 585

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 124/221 (56%), Positives = 166/221 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SH+LMLR GMI + + G+Y++LPLG +++  V  I+REE
Sbjct: 15  MRYSQYFIPTVKETPSDAEVISHQLMLRAGMIRKLAAGVYNYLPLGLRSIRKVENIVREE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PT+Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 75  MNRAGAIELLMPTVQPAELWQESGRWEQYGKELLRFKDRKDTEFCMGPTHEEVITDLVRR 134

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  + +  SY+KM+ +
Sbjct: 135 EVKSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEKAADISYDKMYQA 194

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GL+   + A++G IGG  SHEF+VLA++GE  +
Sbjct: 195 YRRIFERCGLRFRAVEADTGSIGGSYSHEFMVLAESGEDAI 235



 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 112/179 (62%), Gaps = 3/179 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +D+ N  L D  P     +    RGIEVGH+F  GTKYS  M AT+  ADGK+  + MG 
Sbjct: 394 ADIRNVVLGDPCPRCDSGTLEMWRGIEVGHVFKLGTKYSKAMKATYLDADGKEQIIFMGC 453

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA IE +HD  GII+P  +APF   +  +   ++  RD+ E IYA+L+  G
Sbjct: 454 YGIGIGRTVAACIEQNHDDNGIIFPLPIAPFHCIISALNMKEEPVRDSSEAIYAQLAAAG 513

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +V  DD  E+ G +F  ADL+G PL+++VGSK ++D KVE+K+R TG  E +S+ + +
Sbjct: 514 VEVLLDDRDERPGFKFKDADLIGIPLRIVVGSKNLADGKVELKNRKTGDVELLSIADAV 572


>gi|107021665|ref|YP_619992.1| prolyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|123072438|sp|Q1BZD6|SYP_BURCA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|105891854|gb|ABF75019.1| prolyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 168/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +  +D+  + R+  +K+YA
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDMVRETADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 501 ELVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGR 551


>gi|29653442|ref|NP_819134.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|81839111|sp|Q83F67|SYP_COXBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29540704|gb|AAO89648.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 493]
          Length = 566

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 167/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDE 228



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 128/240 (53%), Gaps = 17/240 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+  +L   FIV  D  +         +DF   +   DF  I    ++  +   P  + 
Sbjct: 338 GPV--NLPIPFIVDRDAAQ--------LVDFSCGANEDDFHWI----NVNWERDVPLGSV 383

Query: 260 SDVHNEKLFDSLPENK-RVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D  P+ K R+  ARGIEVG +F  G KYS  M+AT     GK  Y+QMG Y
Sbjct: 384 ADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKMNATVVDELGKSRYLQMGCY 443

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H     R+ACEK+Y  L   G
Sbjct: 444 GIGVSRTVAAAIEQNHDERGIIWPMPMAPFFIALVPVNMHKSYRVREACEKLYNELIDAG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V WDD  E+ G  FA  DL+G P ++++    +    VE K R +   E++SLE V++
Sbjct: 504 YEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVEYKARKSKEAENVSLENVLS 563


>gi|189083494|sp|A9KGU5|SYP_COXBN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 167/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDE 226



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 128/240 (53%), Gaps = 17/240 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+  +L   FIV  D  +         +DF   +   DF  I    ++  +   P  + 
Sbjct: 336 GPV--NLPIPFIVDRDAAQ--------LVDFSCGANEDDFHWI----NVNWERDVPLGSV 381

Query: 260 SDVHNEKLFDSLPENK-RVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D  P+ K R+  ARGIEVG +F  G KYS  M+AT     GK  Y+QMG Y
Sbjct: 382 ADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKMNATVVDELGKSRYLQMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H     R+ACEK+Y  L   G
Sbjct: 442 GIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHKSYRVREACEKLYNELIDAG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V WDD  E+ G  FA  DL+G P ++++    +    VE K R +   E++SLE V++
Sbjct: 502 YEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVEYKARKSKEAENVSLENVLS 561


>gi|116688611|ref|YP_834234.1| prolyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|170731910|ref|YP_001763857.1| prolyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|152016591|sp|A0K4B4|SYP_BURCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699124|sp|B1JVA5|SYP_BURCC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116646700|gb|ABK07341.1| prolyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|169815152|gb|ACA89735.1| prolyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 578

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 168/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +  +D+  + R+  +K+YA
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDMVRETADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 501 ELVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGR 551


>gi|212213390|ref|YP_002304326.1| prolyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212011800|gb|ACJ19181.1| prolyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 566

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 167/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDE 228



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 119/216 (55%), Gaps = 7/216 (3%)

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVS-ARG 281
           +   +DF   +   DF  I    ++  +   P  + +D+      D  P+ K R+  ARG
Sbjct: 352 AAQLVDFSCGANEDDFHWI----NVNWERDVPLGSVADIRKVVEGDISPDGKGRLRFARG 407

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVG +F  G KYS  M+AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP
Sbjct: 408 IEVGQVFQLGDKYSRQMNATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWP 467

Query: 342 DSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             +APF I+L+ +  H     R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G 
Sbjct: 468 TPMAPFFIALVPVNMHKSYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGI 527

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           P ++++    +    VE K R +   E++SLE V++
Sbjct: 528 PHRLVISESGLDRGIVEYKARKSKEAENVSLENVLS 563


>gi|161829880|ref|YP_001596051.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|189083495|sp|A9N9Z2|SYP_COXBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161761747|gb|ABX77389.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 564

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 167/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDE 226



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 128/240 (53%), Gaps = 17/240 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+  +L   FIV  D  +         +DF   +   DF  I    ++  +   P  + 
Sbjct: 336 GPV--NLPIPFIVDRDAAQ--------LVDFSCGANEDDFHWI----NVNWERDVPLGSV 381

Query: 260 SDVHNEKLFDSLPENK-RVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D  P+ K R+  ARGIEVG +F  G KYS  M+AT     GK  Y+QMG Y
Sbjct: 382 ADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKMNATVVDELGKSRYLQMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H     R+ACEK+Y  L   G
Sbjct: 442 GIGVSRTVAAAIEQNHDERGIIWPMPMAPFFIALVPVNMHKSYRVREACEKLYNELIDAG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V WDD  E+ G  FA  DL+G P ++++    +    VE K R +   E++SLE V++
Sbjct: 502 YEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVEYKARKSKEAENVSLENVLS 561


>gi|256828741|ref|YP_003157469.1| prolyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256577917|gb|ACU89053.1| prolyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 580

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 129/225 (57%), Positives = 167/225 (74%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+++P L+E P +AE+ SHKL+LR GMI + + GIY+++PLG +A++ V  I+REE
Sbjct: 1   MLFSKFYVPTLKETPAEAEVISHKLLLRAGMIRKLTSGIYTYMPLGLRAINKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+S+P +Q ADLW ESGR+D YGKE+LRL DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEISMPMVQPADLWQESGRWDFYGKELLRLKDRHGRDYCLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   EG   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDDEGVNASYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y R+F RLGL+   + A+SG IGG  SHEF+VLADTGE T   C+
Sbjct: 181 YTRVFTRLGLEFRAVSADSGAIGGSFSHEFMVLADTGEDTLAVCT 225



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 100/157 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  GTKYS  M+ATF   +GK+  + MG YGIG  RVVAA IE ++D  G+I
Sbjct: 408 KGIEVGHVFKLGTKYSKSMNATFLDENGKEQVIIMGCYGIGVSRVVAACIEQNNDANGMI 467

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P S+APF+I+++ +   D+       +I+  L   G D  +DD  E+ G +F  ADLLG
Sbjct: 468 FPPSIAPFEITILAMSTKDEKVMAKGREIHDWLESQGIDTLFDDRDERPGVKFNEADLLG 527

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            P+Q+++G K +    +E+K+R TG + ++ + +  N
Sbjct: 528 SPMQIVIGGKGLEKGVLEVKNRKTGEKRELPVADWQN 564


>gi|209364247|ref|YP_001425332.2| prolyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|207082180|gb|ABS76694.2| prolyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 566

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 167/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDE 228



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 128/240 (53%), Gaps = 17/240 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+  +L   FIV  D  +         +DF   +   DF  I    ++  +   P  + 
Sbjct: 338 GPV--NLPIPFIVDRDAAQ--------LVDFSCGANEDDFHWI----NVNWERDVPLGSV 383

Query: 260 SDVHNEKLFDSLPENK-RVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D  P+ K R+  ARGIEVG +F  G KYS  M+AT     GK  Y+QMG Y
Sbjct: 384 ADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKMNATVVDELGKSRYLQMGCY 443

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H     R+ACEK+Y  L   G
Sbjct: 444 GIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHKSYRVREACEKLYNELIDAG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V WDD  E+ G  FA  DL+G P ++++    +    VE K R +   E++SLE V++
Sbjct: 504 YEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVEYKARKSKEAENVSLENVLS 563


>gi|238754780|ref|ZP_04616131.1| Prolyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238706940|gb|EEP99306.1| Prolyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 572

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/277 (48%), Positives = 180/277 (64%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GM+ + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMVRKLASGLYTWLPTGIRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y RIF R+GL   P+ A++G IGGD SHEF VLAD+GE  +  S         +F +   
Sbjct: 181 YNRIFSRMGLDFRPVLADTGSIGGDASHEFQVLADSGEDDIVFSTGSDYAANIEFAEAMA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P+E            D  +  ++  +VEQ+  P   T
Sbjct: 241 PTEPRAAATEALRIIDTPNAKTIAELVEQFQMPIEKT 277



 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 113/186 (60%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPPVADLRNVVEGDISPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 AMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R TG ++ +  
Sbjct: 500 LRTKGIEVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRTGEKQMIKT 559

Query: 432 EEVINY 437
            E+I +
Sbjct: 560 SEIIEF 565


>gi|222055493|ref|YP_002537855.1| prolyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|254782902|sp|B9LZK1|SYP_GEOSF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221564782|gb|ACM20754.1| prolyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 570

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 166/221 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SH+LMLR GMI + + G+Y++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHQLMLRGGMIRKLAAGVYNYLPLGLRSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PT+Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPTVQPAELWQESGRWEQYGKELLRFRDRKDTEFCLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  + +  SY+KM+ +
Sbjct: 121 EVKSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVDEKAADISYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GLK   + A++G IGG  SHEF+VLA++GE  +
Sbjct: 181 YRRIFERCGLKFRAVEADTGSIGGSWSHEFMVLAESGEDAI 221



 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 111/179 (62%), Gaps = 3/179 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +D+ N  L D  P  +  +    RGIEVGH+F  GTKYS  M AT+  ADGK+  + MG 
Sbjct: 380 ADIRNVVLGDPCPRCESGTLEMWRGIEVGHVFKLGTKYSKAMKATYLDADGKEQIIFMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA IE +HD  GII+P  +APF   +  +   + V R+A E IY +L+  G
Sbjct: 440 YGIGIGRTVAACIEQNHDENGIIFPLPIAPFHCIISALNMKEDVVREASEAIYGQLAAAG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +V  DD  E+ G +F  ADL+G P++++VGSK ++D KVE+K R +G  E +S+ + +
Sbjct: 500 IEVLLDDRDERPGFKFKDADLIGIPMRIVVGSKNLADGKVELKCRRSGEVELLSIADAV 558


>gi|238918575|ref|YP_002932089.1| prolyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259511594|sp|C5B780|SYP_EDWI9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238868143|gb|ACR67854.1| prolyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 572

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYEAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFS 224



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 114/178 (64%), Gaps = 3/178 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  GTKY+  ++AT +G DG++  + MG Y
Sbjct: 385 ADIRNVIEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEALNATVQGEDGRNQLMTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++Y  L   G
Sbjct: 445 GIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVKEVAERLYDGLRAKG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +V  DD  E+ G  FA  +L+G P  +++G + + ++++E K+R +G +  +S++E+
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNNEIEYKYRRSGDKLMISVDEI 562


>gi|295677734|ref|YP_003606258.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295437577|gb|ADG16747.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 578

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 139/257 (54%), Positives = 181/257 (70%), Gaps = 11/257 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIISHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRRQGDFVLGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDFMDFPIPSENTD 238
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  + +C S DF      + N +
Sbjct: 181 YVRIFTRLGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYCPSSDF------AANVE 234

Query: 239 FDDIISLNSIVEQWTAP 255
             D + L   + Q  AP
Sbjct: 235 AADALPL---IAQRAAP 248



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDETGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +  +D+    R+  +K+YA
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDAVREQADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 ELAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKIEYQGR 551


>gi|83720100|ref|YP_441693.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167618612|ref|ZP_02387243.1| prolyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|257137862|ref|ZP_05586124.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|114152178|sp|Q2SZF6|SYP_BURTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83653925|gb|ABC37988.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 578

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVIADIRNVKAGDPSPDGKGVLDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGIIWP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 VMGCYGIGVTRILGAAIEQNFDDKGIIWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|82523942|emb|CAI78664.1| prolyl-tRNA synthetase [uncultured delta proteobacterium]
          Length = 574

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 166/226 (73%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E P DAE+ SHKLM+R GMI + + GIYS+LPLG + +  V  I+REE
Sbjct: 1   MRYSEMHLPTLREIPSDAEVVSHKLMIRAGMIRKLTSGIYSYLPLGYRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +Q ++LW ESGR+  YGKE+LR  DR+D+   +GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAQEVFMPMVQPSELWEESGRWVHYGKELLRFRDRHDRPYCFGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD    G+++SY KMF +
Sbjct: 121 DVKTYRQLPLNLYQIQTKFRDEVRPRFGVMRCREFGMKDAYSFDADEAGAQNSYEKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y  IF R GL+  P+ A+SG IGG  SHEF+V+AD+GE   VFC K
Sbjct: 181 YNNIFRRCGLRFRPVEADSGSIGGKYSHEFMVMADSGEDAMVFCEK 226



 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 102/158 (64%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GTKYS  M A +   DG++  + MG YGIG  R VAA IE ++D +GI
Sbjct: 403 ARGIEVGHVFKLGTKYSKAMKAVYLDKDGQEKVMIMGCYGIGIGRTVAACIEQNYDDQGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP  +AP+ + +  +  +D+   D  E +Y ++     +V  DD  E+ G +F  ADL+
Sbjct: 463 VWPVPLAPYHVIITPVNVNDKSISDVAENLYNKMQDKKIEVILDDRDERAGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL+V++G K ++ +KVE+K R TG  + ++++E++N
Sbjct: 523 GIPLRVVIGQKNLAQNKVELKIRKTGENKLIAVDEIVN 560


>gi|167580503|ref|ZP_02373377.1| prolyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 578

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVIADIRNVKAGDPSPDGKGVLDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGIIWP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 VMGCYGIGVTRILGAAIEQNFDDKGIIWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|51245016|ref|YP_064900.1| prolyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|81826866|sp|Q6AP31|SYP_DESPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50876053|emb|CAG35893.1| probable prolyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 570

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P  +E P +AE+ASH+LMLR G + + S G+YS+LP G  A+  V  I+REE
Sbjct: 1   MRYSQSFIPTKKETPAEAEVASHQLMLRAGFMRKLSSGVYSYLPYGLAAIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA EM +P +Q ADLW E+GRY+ YG E+LR  DRN++    GPTHEEV+TDI R+
Sbjct: 61  MNRAGAQEMLMPMVQPADLWKETGRYEKYGPELLRFFDRNNRESCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  E +  SY+KMF +
Sbjct: 121 ELSSYRDLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDVDDEQANLSYDKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+  P++A+SG IGG  SHEF+VLA TGE  +   KD
Sbjct: 181 YKRIFTRCGLQFRPVQADSGAIGGSHSHEFMVLAKTGEDTIVVCKD 226



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 93/160 (58%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGH+F  GT YS  M+A F+   G +    MG YGIG  RVVAA IE +HD  GII+
Sbjct: 403 GIEVGHVFKLGTGYSESMNARFQDGTGDEKPFVMGCYGIGVSRVVAAAIEQNHDKDGIIF 462

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP+ ++++N+   D     A EK+YA L   G  V  DD  E+ G++F  ADLLG 
Sbjct: 463 PVPLAPYTVTVLNLGLKDPEITAAAEKLYAELQAAGLSVLLDDRDERPGAKFKDADLLGI 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           P ++ VG     +  VE++ R  G  E+M+ E   ++ + 
Sbjct: 523 PYRLTVGKGLAKNGMVEVRRRRDGHTEEMTPEVAADFLAR 562


>gi|164685792|ref|ZP_01945930.2| prolyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165918393|ref|ZP_02218479.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|164601306|gb|EAX33436.2| prolyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917899|gb|EDR36503.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 334]
          Length = 564

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM  + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMFRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDE 226



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 128/240 (53%), Gaps = 17/240 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+  +L   FIV  D  +         +DF   +   DF  I    ++  +   P  + 
Sbjct: 336 GPV--NLPIPFIVDRDAAQ--------LVDFSCGANEDDFHWI----NVNWERDVPLGSV 381

Query: 260 SDVHNEKLFDSLPENK-RVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D  P+ K R+  ARGIEVG +F  G KYS  M+AT     GK  Y+QMG Y
Sbjct: 382 ADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKMNATVVDELGKSRYLQMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H     R+ACEK+Y  L   G
Sbjct: 442 GIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHKSYRVREACEKLYNELIDAG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V WDD  E+ G  FA  DL+G P ++++    +    VE K R +   E++SLE V++
Sbjct: 502 YEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVEYKARKSKEAENVSLENVLS 561


>gi|212219440|ref|YP_002306227.1| prolyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|212013702|gb|ACJ21082.1| prolyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 566

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM  + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMFRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDE 228



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 128/240 (53%), Gaps = 17/240 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+  +L   FIV  D  +         +DF   +   DF  I    ++  +   P  + 
Sbjct: 338 GPV--NLPIPFIVDRDAAQ--------LVDFSCGANEDDFHWI----NVNWERDVPLGSV 383

Query: 260 SDVHNEKLFDSLPENK-RVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D  P+ K R+  ARGIEVG +F  G KYS  M+AT     GK  Y+QMG Y
Sbjct: 384 ADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKMNATVVDELGKSRYLQMGCY 443

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H     R+ACEK+Y  L   G
Sbjct: 444 GIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHKSYRVREACEKLYNELIDAG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V WDD  E+ G  FA  DL+G P ++++    +    VE K R +   E++SLE V++
Sbjct: 504 YEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVEYKARKSKEAENVSLENVLS 563


>gi|126440120|ref|YP_001060493.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|166980109|sp|A3NDS2|SYP_BURP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126219613|gb|ABN83119.1| proline--tRNA ligase [Burkholderia pseudomallei 668]
          Length = 578

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 ELAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|269137906|ref|YP_003294606.1| prolyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267983566|gb|ACY83395.1| prolyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304557958|gb|ADM40622.1| Prolyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 572

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T    + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQASLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YGRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFS 224



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 115/181 (63%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  GTKY+  ++AT +G DG++  + MG Y
Sbjct: 385 ADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEALNATVQGEDGRNQLMTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++Y  L   G
Sbjct: 445 GIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVKEVAERLYDELRAKG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  V++G + + ++++E K+R +G +  +S++E+  
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNLDNNEIEYKYRRSGEKLMISVDEIAA 564

Query: 437 Y 437
           +
Sbjct: 565 F 565


>gi|237813889|ref|YP_002898340.1| proline--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|237505775|gb|ACQ98093.1| proline--tRNA ligase [Burkholderia pseudomallei MSHR346]
          Length = 578

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|167825898|ref|ZP_02457369.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|226196858|ref|ZP_03792437.1| proline--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|254299336|ref|ZP_04966786.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157809003|gb|EDO86173.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|225931118|gb|EEH27126.1| proline--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
          Length = 578

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|291280439|ref|YP_003497274.1| prolyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290755141|dbj|BAI81518.1| prolyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 573

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/251 (52%), Positives = 175/251 (69%), Gaps = 10/251 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+E+P +AE+ SHK MLR GMI + + GIY++LP G K +  V  I+R+ 
Sbjct: 1   MRLSQYFLPTLREDPSEAEVVSHKFMLRAGMIRKVAAGIYNYLPAGLKVIKKVENIVRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +  A+LW+ESGR++ YGKE+LRL DR+D+    GPTHEEV+TDI R+
Sbjct: 61  MNEAGAIELLMPAVVPAELWIESGRWNVYGKELLRLKDRHDRDFCIGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  EG++ SY  M+ +
Sbjct: 121 EVKSYKQLPLNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDVDDEGAEKSYMLMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF   GL+ + + A+SG IGG+ SHEF+V ADTGE          DF I   N DF 
Sbjct: 181 YCKIFEACGLEYVVVEADSGAIGGNFSHEFMVTADTGE----------DFVISCTNCDFA 230

Query: 241 DIISLNSIVEQ 251
             I    I+++
Sbjct: 231 ANIEKAPILDE 241



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 94/157 (59%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  GTKYS  M+A +   DGK   + MG YGIG  R  AA IE +HD KGI
Sbjct: 402 TKGIEVGHIFKLGTKYSKAMNAYYLDKDGKQKLMVMGCYGIGIGRTAAAAIEQNHDEKGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  +APF++ ++ I  + +   +  E +Y +L     DV  DD  E+ G +F  ADL+
Sbjct: 462 IWPVQIAPFEVVIVPINTNSEDVVNLSETLYLKLKNNNVDVLIDDRDERAGVKFNDADLV 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G+PL++ VG+K ++   VEI  R T    ++  E+ I
Sbjct: 522 GYPLRINVGAKALAKGNVEIFIRKTKETVEVKKEDAI 558


>gi|78065148|ref|YP_367917.1| prolyl-tRNA synthetase [Burkholderia sp. 383]
 gi|114152177|sp|Q39JU3|SYP_BURS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77965893|gb|ABB07273.1| Prolyl-tRNA synthetase [Burkholderia sp. 383]
          Length = 578

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/224 (57%), Positives = 167/224 (74%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  + +C
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPDVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +  +D+  + R+  +K+YA
Sbjct: 442 LMGCYGVGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDMVRETADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 501 ELVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGR 551


>gi|251788479|ref|YP_003003200.1| prolyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247537100|gb|ACT05721.1| prolyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 572

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ MF +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVFS 224



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 109/182 (59%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RV+AA IE +HD +GIIWPD++ PF+++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVIAAAIEQNHDDRGIIWPDAITPFQVAILPMNMHKSFRVQEVAEGIYQQLRAN 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E KHR  G +E +   +++
Sbjct: 504 GIDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIEYKHRRKGEKEMIKAGDIV 563

Query: 436 NY 437
            +
Sbjct: 564 EF 565


>gi|53720607|ref|YP_109593.1| prolyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76808687|ref|YP_334889.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121599492|ref|YP_991789.1| prolyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124386640|ref|YP_001027282.1| prolyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126449387|ref|YP_001082781.1| prolyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126455301|ref|YP_001067757.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134280246|ref|ZP_01766957.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|167920563|ref|ZP_02507654.1| prolyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217421246|ref|ZP_03452751.1| proline--tRNA ligase [Burkholderia pseudomallei 576]
 gi|242316379|ref|ZP_04815395.1| proline--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|251766621|ref|ZP_02264460.2| proline--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254178869|ref|ZP_04885523.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254180577|ref|ZP_04887175.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254190985|ref|ZP_04897491.1| prolyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254199071|ref|ZP_04905486.1| prolyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254258028|ref|ZP_04949082.1| proline--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|81824656|sp|Q63QM5|SYP_BURPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152176|sp|Q3JNG4|SYP_BURP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980105|sp|A3MR95|SYP_BURM7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980106|sp|A2S5R3|SYP_BURM9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980107|sp|A1V0N6|SYP_BURMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980108|sp|A3NZI6|SYP_BURP0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52211021|emb|CAH37009.1| prolyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76578140|gb|ABA47615.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121228302|gb|ABM50820.1| prolyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124294660|gb|ABN03929.1| proline--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126228943|gb|ABN92483.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242257|gb|ABO05350.1| proline--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134248253|gb|EBA48336.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|157938659|gb|EDO94329.1| prolyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160694783|gb|EDP84791.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169656901|gb|EDS88298.1| prolyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184211116|gb|EDU08159.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217396658|gb|EEC36675.1| proline--tRNA ligase [Burkholderia pseudomallei 576]
 gi|242139618|gb|EES26020.1| proline--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243065285|gb|EES47471.1| proline--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254216717|gb|EET06101.1| proline--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 578

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|238026159|ref|YP_002910390.1| prolyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237875353|gb|ACR27686.1| Prolyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 578

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/229 (56%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRIAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDQAGLKESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+R+F R+GL+   + A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRVFTRIGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  + ATF    GK   +
Sbjct: 382 PEPVVADLRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSKALGATFLDEGGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D +GIIWP+++APF++ L  +     ++ R+  +++YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDRGIIWPEAIAPFEVVLCPMGYDRSELVRETADQLYAA 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           LS  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 502 LSAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|260548877|ref|ZP_05823099.1| prolyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260408045|gb|EEX01516.1| prolyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 571

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAFSTE 226



 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGII
Sbjct: 410 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGII 469

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G DV  DD  E+ G +F+  +L+
Sbjct: 470 WPQAIAPFEIAIVPMNAHKSPRTLEAAEALYAELQAQGFDVLLDDRNERPGVKFSDLELM 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 530 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|184159387|ref|YP_001847726.1| prolyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|239501767|ref|ZP_04661077.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|332876227|ref|ZP_08444002.1| proline--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|226695842|sp|B2HY33|SYP_ACIBC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731481|sp|A3M8I1|SYP_ACIBT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183210981|gb|ACC58379.1| Prolyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|193078264|gb|ABO13225.2| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|322509299|gb|ADX04753.1| proS [Acinetobacter baumannii 1656-2]
 gi|323519326|gb|ADX93707.1| prolyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735499|gb|EGJ66551.1| proline--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 571

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTE 226



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGII
Sbjct: 410 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGII 469

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G DV  DD  E+ G +F+  +L+
Sbjct: 470 WPQAIAPFEIAIVPMNAHKSPRTLEAAEALYAELQAQGFDVLLDDRNERPGVKFSDLELM 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 530 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|260557205|ref|ZP_05829421.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260409311|gb|EEX02613.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 571

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTE 226



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGII
Sbjct: 410 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGII 469

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G D+  DD  E+ G +F+  +L+
Sbjct: 470 WPQAIAPFEIAIVPMNAHKSPRTLEAAEALYAELQAQGFDLLLDDRNERPGVKFSDLELM 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 530 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|169794838|ref|YP_001712631.1| prolyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|213157835|ref|YP_002320633.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|215482385|ref|YP_002324567.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|301345755|ref|ZP_07226496.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301511535|ref|ZP_07236772.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|301594855|ref|ZP_07239863.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|332852292|ref|ZP_08434097.1| proline--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332870515|ref|ZP_08439279.1| proline--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|226695840|sp|B7GWV6|SYP_ACIB3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226695841|sp|B7I854|SYP_ACIB5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731418|sp|B0V4Y6|SYP_ACIBY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169147765|emb|CAM85628.1| prolyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|213056995|gb|ACJ41897.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|213986493|gb|ACJ56792.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|332729422|gb|EGJ60762.1| proline--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332732252|gb|EGJ63520.1| proline--tRNA ligase [Acinetobacter baumannii 6013113]
          Length = 571

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTE 226



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGII
Sbjct: 410 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGII 469

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G DV  DD  E+ G +F+  +L+
Sbjct: 470 WPQAIAPFEIAIVPMNAHKSPRTLEAAEALYAELQAQGFDVLLDDRNERPGVKFSDLELM 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 530 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|326426858|gb|EGD72428.1| prolyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 447

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 244/438 (55%), Gaps = 17/438 (3%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           + F+P+L+E P+ A   SH+L+LR G I Q   G+Y+ LP+  + +  + +++R E N  
Sbjct: 11  RLFVPLLKEVPKHAVAHSHQLLLRGGYIWQAGSGLYALLPMANRVVQRLQSLVRAELNAI 70

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G+ E  +P +    LW +SGR+   G E+ RL DR   A     THEE +T +  S + S
Sbjct: 71  GSQECVLPAITDKHLWQQSGRWQEAGDELFRLEDRKGAAYCLAATHEETVTALVSSLVSS 130

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP   YQ+Q K+RDE+RPR+G++R REF+MKD Y+FD + + ++ +Y K+   Y RI
Sbjct: 131 HRSLPLYLYQMQPKYRDEMRPRYGLLRCREFMMKDMYTFDSSEQDARATYAKVVECYQRI 190

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             RLG+    ++A++G IGG LSHEF + A+ GE ++     F D    + N     I  
Sbjct: 191 LQRLGVPFAKVQADTGLIGGSLSHEFQIKAEIGEDELI----FCDTCNQAAN-----IEK 241

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           ++ +++       + S                 +++GIEVGH F  GTKYS    A F  
Sbjct: 242 IDGLIDACPHASPSPSTSPRPPSASC----SWTTSKGIEVGHAFLLGTKYSTVFDAAFLD 297

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           AD +   + MG YG+G  R+++AV E+ HD +G+IWP ++APF +S+ ++   +    + 
Sbjct: 298 ADSQRQDIHMGCYGLGLTRMLSAVAEAQHDAEGLIWPIAMAPFVVSIASVGRMNTFKDEK 357

Query: 365 CEKIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           C  +Y  L+   ++   +  D        + A + ++G P  V+VG  F S+  +E+  R
Sbjct: 358 CRALYEVLNSRPELSDLIVLDTRDMSPRHKLANSRMVGIPFTVLVGDWFDSE-HLEVYAR 416

Query: 422 LTGIREDMSLEEVINYAS 439
            +  ++DMS+EE ++  S
Sbjct: 417 TSHDKQDMSVEEFVSLLS 434


>gi|330815470|ref|YP_004359175.1| Prolyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327367863|gb|AEA59219.1| Prolyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 578

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 169/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRIKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDQAGLKESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+R+F R+GL+   + A++G IGG  SHEF V+ADTGE  + +C
Sbjct: 181 YVRVFTRIGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N +  D  P+ K V    RGIEVGH+F  GTKYS  M +TF    GK   +
Sbjct: 382 PEPEVADLRNVQKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSKAMGSTFLDEGGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +     +  R+A ++++A 
Sbjct: 442 EMGCYGIGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSEAVRNAADQLHAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 502 LLAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|163750377|ref|ZP_02157617.1| prolyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161329867|gb|EDQ00853.1| prolyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 569

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/226 (56%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GM+ +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVVSHQLMLRAGMVRRNASGLYSWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWIETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y+ MF +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQESMDVTYDTMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL   P+ A++G IGG +SHEF VLAD+GE  +  S +
Sbjct: 181 YNNIFERMGLSFRPVLADTGSIGGSMSHEFHVLADSGEDLIAYSTE 226



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M A     +GK   + MG YG+G  R+VAA IE +HD +GII
Sbjct: 406 RGIEVGHIFQLGTNYSESMHANVLDKNGKSKTLLMGCYGVGVSRIVAAAIEQNHDDRGII 465

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APFK+ ++ +  H     +D  EK+Y  L+  G +V +DD  E+ G  FA  +L+
Sbjct: 466 WPAAIAPFKVGILPMNMHKSHRVKDMAEKLYQDLNDAGIEVLFDDRKERPGVMFADMELV 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  V++G + + +   E K+R TG + D+  ++++++
Sbjct: 526 GLPHVVVIGDRNIDNGVFEYKNRRTGEKRDIPFDQLLDF 564


>gi|302342678|ref|YP_003807207.1| prolyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301639291|gb|ADK84613.1| prolyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 571

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 163/221 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y +P L+ENP DAE+ SH+LMLR G+I + + GIY+WLP+G + L  V AI+R+E
Sbjct: 1   MNFSRYLIPTLKENPSDAEVVSHQLMLRAGLIRKLAGGIYTWLPMGLRVLRKVEAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q A+LW ESGR+D YG+E+LR  DR+D      PTHEEV+TD+ R 
Sbjct: 61  MNAAGAQELLMPGVQPAELWRESGRWDFYGRELLRFVDRHDNEYCLAPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR++P   YQIQ KFRDE+RPRFGVMR+REFLMKDAYSFD + + +  SY  M  +
Sbjct: 121 EIQSYRDMPLNLYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFDASEDAAAQSYQIMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y+RIF RLGL+   + A+SG IGG  SHEF+VLADTGE  +
Sbjct: 181 YMRIFDRLGLRYGVVEADSGSIGGSFSHEFMVLADTGEDAI 221



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 3/170 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A  A  +D+ N    D  P        ARGIEVGHIF  GTKYS  + AT+   DG+   
Sbjct: 374 AAGATIADLRNLAAGDPCPSCGAPPTLARGIEVGHIFRLGTKYSKALGATYLDVDGQAKT 433

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R+VAA IE  +D  GI++P ++AP  ++++ ++A      +A ++++  
Sbjct: 434 IVMGCYGIGVSRIVAAAIEQGNDEAGIVFPLAIAPVSVAVLPMRAEGPAM-EAAQRLHDE 492

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L  +G D   DD   + G +F  +DLLG PL+V+VG K +   +VE+K R
Sbjct: 493 LWALGVDCLLDDRDIRPGVKFKDSDLLGVPLRVVVGPKGLETGEVELKKR 542


>gi|311280836|ref|YP_003943067.1| prolyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308750031|gb|ADO49783.1| prolyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 572

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 195/303 (64%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DTSDY---AANIEFA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           + ++        +AP AA +      L D+   N +  A  +E         ++SLP+  
Sbjct: 237 EALAP-------SAPRAAAT--QEMTLVDT--PNAKTIAELVE---------QFSLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 112/182 (61%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  M+A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGTKYSQAMNAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  V++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDDIEYKYRRNGDKQLIKTGDIL 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|169632514|ref|YP_001706250.1| prolyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|226695258|sp|B0VRW9|SYP_ACIBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169151306|emb|CAP00010.1| prolyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 571

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRTSRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG  +LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPGLLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +YN M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYNVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTE 226



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGIIW
Sbjct: 411 GIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIW 470

Query: 341 PDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           P ++APF+I+++ + AH      +A E +YA L   G DV  DD  E+ G +F+  +L+G
Sbjct: 471 PQAIAPFEIAIVPMNAHKSPRTLEAAEALYAELQAQGFDVLLDDRNERPGVKFSDLELMG 530

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P ++++G K +     E K R      +++ EE++
Sbjct: 531 IPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|307132338|ref|YP_003884354.1| prolyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306529867|gb|ADM99797.1| prolyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 572

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVFSTE 226



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 110/181 (60%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +G DG++  + MG Y
Sbjct: 385 ADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQGEDGRNQTLTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H     ++  E IY +L   G
Sbjct: 445 GIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVQEVAEGIYQQLRANG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G  FA  +L+G P  +++G + + + ++E KHR  G +E +   +++ 
Sbjct: 505 VDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIEYKHRRKGEKEMIKAGDIVE 564

Query: 437 Y 437
           +
Sbjct: 565 F 565


>gi|226942102|ref|YP_002797176.1| prolyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|226717029|gb|ACO76167.1| Syp [Laribacter hongkongensis HLHK9]
          Length = 569

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 166/224 (74%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL  L+E P +AE+ SHKLMLR GMI + S G+Y+W+PLG + L  V AI+REE
Sbjct: 1   MRASQYFLSTLKEAPNEAELPSHKLMLRAGMIKRLSSGLYTWMPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR+ DR+++    GPTHEEV+TD  R 
Sbjct: 61  MNRAGAIELLMPAIQPAELWQESGRWEFYGKELLRVKDRHERDFCVGPTHEEVITDAVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  K +Y  M+ +
Sbjct: 121 EVKSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDFDSLKATYQGMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y R+F RLGL   P+ A++G IGG  SHEF VLAD+GE  + +C
Sbjct: 181 YCRVFTRLGLDFRPVAADTGSIGGTGSHEFQVLADSGEDVIAYC 224



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 5/208 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSL 296
           +D + L  +      P    +D+ N    D  P+ +   R+  RGIEVGH+F    KY+ 
Sbjct: 362 EDDVHLTGVNFGRDCPEPEVADLRNVVEGDPSPDGQGEIRLC-RGIEVGHVFQLRKKYAE 420

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK- 355
            M   F   DGK   ++MG YGIG  RVVAA IE   D +GII+ D++APF +S++ +  
Sbjct: 421 AMDCGFLDQDGKRQIMEMGCYGIGVSRVVAAAIEQGFDERGIIFTDAMAPFTVSIVPMGY 480

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +  + A + +YA L   G DV  DD  E+ G   A ++L+G P +V++G + + + K
Sbjct: 481 RRSESVKAAADALYAELVAAGVDVLLDDRDERPGVLLADSELIGIPHRVVIGDRGLKEGK 540

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           VE + R       + + E+  +   + +
Sbjct: 541 VEYQGRRETEATSVEVAEIAAFVRSKLA 568


>gi|294140027|ref|YP_003556005.1| prolyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293326496|dbj|BAJ01227.1| prolyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 569

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GM+ +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVVSHQLMLRAGMVRRNASGLYSWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGAVEILMPMVQPADLWIETGRWEKFGPELLRFQDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y+ MF +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQESMDVTYDAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL   P+ A++G IGG +SHEF VLAD+GE  +  S +
Sbjct: 181 YNNIFERMGLSFRPVLADTGSIGGSMSHEFHVLADSGEDLIAYSTE 226



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 108/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P  K   A  RGIEVGHIF  GT YS  M A     +GK   +
Sbjct: 379 PQAEAADLRNIIEGEPSPCGKGTIALLRGIEVGHIFQLGTNYSESMHANVLDQNGKSKTL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE +HD +GIIWP ++APF + ++ +  H     +D  EK+Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNHDDRGIIWPKAIAPFTVGILPMNMHKSHRVKDIAEKLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E K+R TG ++++  
Sbjct: 499 LNDAGIEVLFDDRKERPGVMFADMELVGLPHVVVIGDRNIDNGVFEYKNRRTGEKQEIPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQLLDF 564


>gi|146310396|ref|YP_001175470.1| prolyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166980121|sp|A4W6T9|SYP_ENT38 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145317272|gb|ABP59419.1| prolyl-tRNA synthetase [Enterobacter sp. 638]
          Length = 572

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR++ YG E+LR  DR +++ + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWEQYGPELLRFVDRGERSFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKD+YSF  + E  + +Y+KM+ +
Sbjct: 121 ELNSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDSYSFHTSQESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS 224



 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 113/182 (62%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  ++A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGTKYSEALNASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIVWPDNLAPFQVAILPMNMHKSYRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  V++G + +    +E K+R +G ++ +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDSDDIEYKYRRSGEKQMIKTGDIL 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|118580173|ref|YP_901423.1| prolyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166980138|sp|A1APU5|SYP_PELPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118502883|gb|ABK99365.1| prolyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 576

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 125/218 (57%), Positives = 161/218 (73%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+YF+P ++E P DAE+ SH+LMLR GMI + + GIY++LPLG +++    AI+REE NR
Sbjct: 4   SRYFIPTIKETPSDAEVVSHQLMLRAGMIRKLAAGIYNYLPLGLRSIRKFEAIVREEMNR 63

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GAIEM +P++Q A+LW ESGR+  YGKE+LR  DR D     GPTHEEV+TD+ R  IK
Sbjct: 64  AGAIEMLMPSVQPAELWEESGRWSFYGKELLRFRDRKDGEFCMGPTHEEVITDMVRREIK 123

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR +P  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    +  SY  MF +Y+R
Sbjct: 124 SYRQMPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDVDSAAADGSYELMFQAYMR 183

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           IF R GL    + A++G IGG  SHEF+VLAD+GE  +
Sbjct: 184 IFERCGLNFRAVEADTGTIGGSSSHEFMVLADSGEDAI 221



 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 261 DVHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N +  D  P     K    RGIEVGH+F  GTKYS  + AT+  ADGK+  + MG Y
Sbjct: 384 DLRNVEAGDPCPRCEGGKLEMWRGIEVGHVFKLGTKYSQALGATYLDADGKEQVIFMGCY 443

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R VAA IE +HD  GII+P  +APF  S++ +   D+    A E++Y RL + G 
Sbjct: 444 GIGIGRTVAAAIEQNHDDNGIIFPLPLAPFHCSVVALNTKDKGVMAAAEEMYFRLEQQGI 503

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +V +DD  E+ G +F   DL+G PL+++VGSK +S+ KVE+K R +G
Sbjct: 504 EVLFDDRDERPGVKFKDNDLIGIPLRIVVGSKGLSEGKVEVKIRASG 550


>gi|283783983|ref|YP_003363848.1| prolyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282947437|emb|CBG86984.1| prolyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 572

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 138/303 (45%), Positives = 189/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL+   ++A++G IGG  SHEF VLA +GE  +          I S+ +D+ 
Sbjct: 181 YSKIFTRIGLEFRAVQADTGSIGGSASHEFQVLAQSGEDDI----------IFSDTSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   V    AP A  +    E      P+ K ++              +Y+LP+  
Sbjct: 231 ANIELAEAV----APKAPRAAATQEMTLVDTPDAKTIAE----------LVEQYNLPIEN 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
           ++
Sbjct: 564 SF 565


>gi|53726087|ref|YP_104063.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|238561266|ref|ZP_00442346.2| proline--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|254202783|ref|ZP_04909146.1| prolyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254208125|ref|ZP_04914475.1| prolyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|81823924|sp|Q62GV8|SYP_BURMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52429510|gb|AAU50103.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|147747030|gb|EDK54107.1| prolyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147752019|gb|EDK59086.1| prolyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|238524974|gb|EEP88404.1| proline--tRNA ligase [Burkholderia mallei GB8 horse 4]
          Length = 578

 Score =  275 bits (704), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/229 (56%), Positives = 170/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R+G +  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRIGFEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|320084496|emb|CBY94289.1| Prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 572

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 140/303 (46%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  I GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFILGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|271501814|ref|YP_003334840.1| prolyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270345369|gb|ACZ78134.1| prolyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 572

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YGKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVFSTE 226



 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 110/181 (60%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +G DG++  + MG Y
Sbjct: 385 ADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQGEDGRNQTLTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H     ++  E IY +L   G
Sbjct: 445 GIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVQEVAEGIYQQLRANG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G  FA  +L+G P  +++G + + + ++E KHR  G +E +   +++ 
Sbjct: 505 IDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIEYKHRRKGEKEMIKAGDIVE 564

Query: 437 Y 437
           +
Sbjct: 565 F 565


>gi|50083997|ref|YP_045507.1| prolyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|81827514|sp|Q6FE23|SYP_ACIAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49529973|emb|CAG67685.1| prolyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 570

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY  YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPASLWEESGRYVQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHVDQASLQETYDNMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLAD+GE  +  S +
Sbjct: 181 YCRIFTRLGLDFRPVQADTGSIGGSGSHEFHVLADSGEDDIVFSTE 226



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 106/185 (57%), Gaps = 3/185 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A ++   D+ N    D  P+ + V    RGIEVGHIF  G KYS  ++ T  G DGK   
Sbjct: 382 AKFSEIYDLRNVVDGDPSPDGQGVLQIKRGIEVGHIFQLGQKYSEALNCTVLGDDGKPLV 441

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYA 370
           V MG YGIG  RVVA+ IE ++D KGIIWP ++APF+I+++ + AH      +A E +YA
Sbjct: 442 VTMGCYGIGVTRVVASAIEQNYDDKGIIWPSAIAPFEIAIVPMNAHKSPKTLEAAEALYA 501

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R      +++
Sbjct: 502 ELQAQGYDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRTDAESVNLT 561

Query: 431 LEEVI 435
            +E++
Sbjct: 562 KDELL 566


>gi|157147374|ref|YP_001454693.1| prolyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|166980115|sp|A8AL94|SYP_CITK8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157084579|gb|ABV14257.1| hypothetical protein CKO_03172 [Citrobacter koseri ATCC BAA-895]
          Length = 572

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 194/303 (64%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG+ SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           + ++         AP AA S      L D+   N +  A  +E         +++LP+  
Sbjct: 237 EAVAPK-------APRAAAS--QEMTLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y  L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYGELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   E++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGEIV 563

Query: 436 NY 437
           ++
Sbjct: 564 DF 565


>gi|307731045|ref|YP_003908269.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307585580|gb|ADN58978.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 578

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 168/229 (73%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 229



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT    +GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDENGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +     +  R+  +K+Y +
Sbjct: 442 EMGCYGIGITRILGAAIEQNFDEKGIIWPESIAPFEVVLCPMGYDRSEAVREQADKLYTQ 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 502 LVDAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKLEYQGR 551


>gi|213423623|ref|ZP_03356603.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 322

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 193/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +          + S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDI----------VFSDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279


>gi|161504638|ref|YP_001571750.1| prolyl-tRNA synthetase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189083510|sp|A9MPG5|SYP_SALAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160865985|gb|ABX22608.1| hypothetical protein SARI_02759 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 572

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLIDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|317493988|ref|ZP_07952404.1| prolyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917761|gb|EFV39104.1| prolyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 572

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWMPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KMF +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTSQESLQETYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  V  S +
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLAQSGEDDVVFSSE 226



 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   +  RGIEVGHIF  GTKY+  + AT +G DG++  +
Sbjct: 380 PLPLVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEALKATVQGEDGRNQLM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +D  E +Y  
Sbjct: 440 TMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVKDLAESLYNS 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  V++G + +   ++E K+R  G ++ +  
Sbjct: 500 LRSKGIDVIMDDRKERPGVMFADMELIGVPHTVVIGDRNLDSDEIEYKNRRNGEKQMIKT 559

Query: 432 EEVINY 437
            E+ ++
Sbjct: 560 GEIEDF 565


>gi|167553343|ref|ZP_02347092.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|238911308|ref|ZP_04655145.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|205322190|gb|EDZ10029.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 572

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|194443070|ref|YP_002039482.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197250542|ref|YP_002145247.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|226701326|sp|B5F8V6|SYP_SALA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701335|sp|B4SV24|SYP_SALNS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194401733|gb|ACF61955.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197214245|gb|ACH51642.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 572

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|121997498|ref|YP_001002285.1| prolyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|152112924|sp|A1WUX1|SYP_HALHL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121588903|gb|ABM61483.1| prolyl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 568

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 164/221 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L   +E P DAEI SH+LMLR GMI + S G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRVTRFPLSTTRETPADAEIVSHQLMLRAGMIRRLSSGLYTWLPLGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+D+   +GPTHEEV+TD+FR 
Sbjct: 61  MNRAGALEVLMPAVQPAELWQESGRWEKYGPELLRIRDRHDREGCFGPTHEEVITDLFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  +YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L  +  +  Y +M  +
Sbjct: 121 EIRSYRQLPVNYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDDDLRAEYQRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GL   P+ A++G IGG +SHEF+VLAD+GE  +
Sbjct: 181 YCRIFQRTGLAFRPVEADTGAIGGSVSHEFMVLADSGEDAI 221



 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 105/191 (54%), Gaps = 2/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T+D+      D  P  E      RGIEVGHIF  GT YS  M A+     G++  V
Sbjct: 378 PEPETADLREVTAGDPSPDGEGTLTLRRGIEVGHIFQLGTTYSEAMGASVLDEQGQERTV 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI WP  +APF+++L+ IKA D    +A E +YA L
Sbjct: 438 TMGCYGIGVSRVVAAAIEQNHDDRGICWPAPIAPFQVALVAIKAEDPAVAEAAEALYADL 497

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +  G DV +DD   + G +FA  +L+G P +V+V  + + +  VE K R       +   
Sbjct: 498 TASGIDVLYDDRDARPGVKFADMELIGIPHRVVVSPRAIQEGSVEYKGRQDADPTHVPRA 557

Query: 433 EVINYASHRFS 443
           E++ +  +R +
Sbjct: 558 EIVTWLKNRLT 568


>gi|168235024|ref|ZP_02660082.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735941|ref|YP_002113265.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204926680|ref|ZP_03217882.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|226701337|sp|B4TYF5|SYP_SALSV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194711443|gb|ACF90664.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291887|gb|EDY31237.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323345|gb|EDZ08540.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 572

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|300724773|ref|YP_003714098.1| proline tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297631315|emb|CBJ92010.1| proline tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 573

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW+ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWLESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 EVTSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+GL   P+ A++G IGG  SHEF VLA++GE  +  S +
Sbjct: 181 YSKIFTRIGLDFRPVLADTGSIGGSASHEFQVLAESGEDDIVFSTE 226



 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 113/186 (60%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  + AT +  DG +  V
Sbjct: 380 PLPEIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDALKATVQNEDGHNQVV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE SHD +GIIW D++APF+++++ +  H     ++  EK+YA 
Sbjct: 440 TMGCYGIGVTRIVAAAIEQSHDDRGIIWSDAIAPFQVAILPMNMHKSYRVKEVAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + + + ++E K R TG ++ + L
Sbjct: 500 LRASGIDVIFDDRKERPGVMFADMELIGVPHTLVIGDRNLDNGEIEYKCRRTGDKQMLKL 559

Query: 432 EEVINY 437
           E +I Y
Sbjct: 560 ESIIEY 565


>gi|192359534|ref|YP_001982928.1| prolyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|190685699|gb|ACE83377.1| prolyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 611

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 37  MRSSRFLIATLKETPADAEVISHQLMLRAGMIRKMASGLYNWLPLGLRVLRKVETIVREE 96

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV+TD+ R+
Sbjct: 97  MNKSGAMEVLMPVVQPAELWEESGRWQQYGPELLRITDRHDRPFCLGPTHEEVITDLIRN 156

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF LT E  + +Y+ M  +
Sbjct: 157 ELKSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLTQESLQQTYDVMHTT 216

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 217 YCNIFSRLGLGYRPVLADTGSIGGAYSHEFHVLADSGEDYIVFS 260



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 107/188 (56%), Gaps = 6/188 (3%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           AP  A  D+ N    D  P  K      RGIEVGHIF  GTKYS  M A     +GK+  
Sbjct: 419 APLVA--DIRNVVTGDPSPCGKGTLEIKRGIEVGHIFQLGTKYSDAMKARVLDENGKEQT 476

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           + MG YGIG  RVVAA IE + D  GIIWPD++APF I+++ I  A  +     CE++YA
Sbjct: 477 MIMGCYGIGVTRVVAAAIEQNFDDNGIIWPDAIAPFHIAIVPINMAKSEAVATKCEELYA 536

Query: 371 RLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +LS  G DV   D+   ++G   A  DL+G P +++VG + +    +E K R    ++++
Sbjct: 537 QLSAAGLDVLLMDEDKARLGVMLADTDLMGIPHRIVVGDRGLEAGSIEYKGRRDAEKQEI 596

Query: 430 SLEEVINY 437
           ++ +++ +
Sbjct: 597 AVGDIVEF 604


>gi|226327022|ref|ZP_03802540.1| hypothetical protein PROPEN_00883 [Proteus penneri ATCC 35198]
 gi|225204240|gb|EEG86594.1| hypothetical protein PROPEN_00883 [Proteus penneri ATCC 35198]
          Length = 571

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/303 (45%), Positives = 194/303 (64%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y W+P G + L  +  I+REE
Sbjct: 1   MRTSHYLLSTLKETPADAEIVSHQLMLRAGMIRKLASGLYDWMPTGVRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+S+P +Q ADLW+ESGR++ YG E+LR +DR ++  + GPTHEEV+TDI R+
Sbjct: 61  MDNAGSLEISMPVVQPADLWLESGRWEQYGPELLRFSDRGERPFVLGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y++M+ +
Sbjct: 121 EITSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHISQESLQETYDRMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL   P+ A++G IGG+ SHEF VLAD+GE  +  S            +D+ 
Sbjct: 181 YSKIFSRIGLDFRPVLADTGSIGGNASHEFQVLADSGEDDIVFST----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   V   T   AAT ++   +L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAVMPATPRTAATEEL---RLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 116/192 (60%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  + AT +  +G +  V
Sbjct: 380 PVAEIADIRNVVEGDQSPDGKGTLLIKRGIEVGHIFQLGTKYSEALKATVQNEEGHNQIV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H     ++  +++Y  
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDARGIIWPDAIAPFQVAILPMNMHRSYRVKEVADRLYNE 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + + ++++E K R +  +  +++
Sbjct: 500 LRAQGIDVLFDDRKERPGVMFADMELIGIPHTIVIGDRNLDNNQIEYKARRSDDKSLVNV 559

Query: 432 EEVINYASHRFS 443
           ++V+ +   + +
Sbjct: 560 DDVVAFIKEQLA 571


>gi|224582089|ref|YP_002635887.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|254782914|sp|C0Q6L7|SYP_SALPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|224466616|gb|ACN44446.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 572

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P  E   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGEGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGKKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|213648168|ref|ZP_03378221.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 306

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 193/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +          + S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDI----------VFSDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279


>gi|162139614|ref|YP_215228.2| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|114152248|sp|Q57T14|SYP_SALCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|322713265|gb|EFZ04836.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 572

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGKKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|322616066|gb|EFY12983.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620849|gb|EFY17709.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623800|gb|EFY20637.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627248|gb|EFY24039.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630555|gb|EFY27319.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638227|gb|EFY34928.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322645504|gb|EFY42031.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648203|gb|EFY44670.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322657523|gb|EFY53795.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663843|gb|EFY60043.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666676|gb|EFY62854.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672166|gb|EFY68278.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676523|gb|EFY72594.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679385|gb|EFY75430.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|323193468|gb|EFZ78676.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197510|gb|EFZ82645.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201221|gb|EFZ86290.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209616|gb|EFZ94549.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212132|gb|EFZ96956.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216437|gb|EGA01163.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223373|gb|EGA07708.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225934|gb|EGA10154.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228525|gb|EGA12654.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236862|gb|EGA20938.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239638|gb|EGA23685.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242315|gb|EGA26344.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249977|gb|EGA33873.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252407|gb|EGA36258.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255690|gb|EGA39443.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262873|gb|EGA46423.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265359|gb|EGA48855.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271854|gb|EGA55272.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 572

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|16759234|ref|NP_454851.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16763631|ref|NP_459246.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140783|ref|NP_804125.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56412515|ref|YP_149590.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161612617|ref|YP_001586582.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167990131|ref|ZP_02571231.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230553|ref|ZP_02655611.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168245012|ref|ZP_02669944.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264654|ref|ZP_02686627.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168464192|ref|ZP_02698095.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194449602|ref|YP_002044232.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472823|ref|ZP_03078807.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197264294|ref|ZP_03164368.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361450|ref|YP_002141086.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242516|ref|YP_002214203.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200386929|ref|ZP_03213541.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205351579|ref|YP_002225380.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207855760|ref|YP_002242411.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213051828|ref|ZP_03344706.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213428490|ref|ZP_03361240.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213580835|ref|ZP_03362661.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213865222|ref|ZP_03387341.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|81821351|sp|Q5PD80|SYP_SALPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81832731|sp|Q7CR62|SYP_SALTY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81849080|sp|Q8XEY9|SYP_SALTI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083511|sp|A9N0U7|SYP_SALPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701327|sp|B5FJ42|SYP_SALDC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701328|sp|B5R434|SYP_SALEP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701329|sp|B5R5J8|SYP_SALG2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701334|sp|B4TK70|SYP_SALHS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701336|sp|B5BAQ2|SYP_SALPK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25293215|pir||AF0532 prolyl-tRNA synthetase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16418747|gb|AAL19205.1| proline tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501525|emb|CAD08702.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136407|gb|AAO67974.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56126772|gb|AAV76278.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161361981|gb|ABX65749.1| hypothetical protein SPAB_00308 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407906|gb|ACF68125.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194459187|gb|EDX48026.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195632930|gb|EDX51384.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197092926|emb|CAR58355.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197242549|gb|EDY25169.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197937032|gb|ACH74365.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199604027|gb|EDZ02572.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205271360|emb|CAR36153.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205331403|gb|EDZ18167.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335202|gb|EDZ21966.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336220|gb|EDZ22984.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205346928|gb|EDZ33559.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206707563|emb|CAR31837.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|267991932|gb|ACY86817.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156869|emb|CBW16345.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911213|dbj|BAJ35187.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225175|gb|EFX50235.1| Prolyl-tRNA synthetase ; Bacterial type [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128562|gb|ADX15992.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326621946|gb|EGE28291.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326626606|gb|EGE32949.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332987194|gb|AEF06177.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 572

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|168823087|ref|ZP_02835087.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205340609|gb|EDZ27373.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
          Length = 572

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|301065031|ref|ZP_07205376.1| proline--tRNA ligase [delta proteobacterium NaphS2]
 gi|300440880|gb|EFK05300.1| proline--tRNA ligase [delta proteobacterium NaphS2]
          Length = 575

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 163/221 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YF+P  +E P DAEI SH+LM+R GMI + + GIY++LP+G K++  V  I+REE
Sbjct: 1   MRYSSYFIPTKKEIPADAEIISHQLMIRAGMIRKLTSGIYTYLPVGLKSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIEVLMPAVQPAELWQESGRWEYYGRELLRFKDRHDRDACMGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ +P   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY  M+ +
Sbjct: 121 EIHSYKQMPINLYQIQTKFRDEIRPRFGIMRGREFIMKDAYSFDVDEAGANRSYEAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GLK   + A+SG IGG  SHEF+VLAD+GE Q+
Sbjct: 181 YERIFQRCGLKFRAVEADSGTIGGSYSHEFMVLADSGEDQI 221



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 91/143 (63%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGH+F  G KYS  M A F    GK+  + MG YGIG  R VAA IE +HD  GI
Sbjct: 404 GRGIEVGHVFKLGVKYSEAMKALFLNEQGKELPMIMGCYGIGIGRTVAAAIEQNHDENGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           ++P  VAPF++S++ ++ H+    +A +KIY  L K G D   DD  E+ G +F  ADLL
Sbjct: 464 VFPIPVAPFEVSILPLQMHNDHVVNAADKIYEELMKSGIDALLDDRDERAGVKFNDADLL 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+++ VGS+ + + +VE+K R
Sbjct: 524 GIPVRITVGSRGLKNGEVEVKLR 546


>gi|295098681|emb|CBK87771.1| prolyl-tRNA synthetase, family II [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 572

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/277 (48%), Positives = 181/277 (65%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S         +F +   
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAANIEFAEALA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P E            D  +  ++  +VEQ+T P   T
Sbjct: 241 PKEPRGAATQEMTLVDTPNAKTIAELVEQFTLPIEKT 277



 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 112/182 (61%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGKGTLMIKRGIEVGHIFQLGDKYSRAMNAAVQGEDGRNQVLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA LS  
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDNIAPFQVAILPMNMHKSYRVQELAEKLYAELSAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   +++
Sbjct: 504 GIDVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIEYKYRRNGEKQMIKTGDIL 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|78357249|ref|YP_388698.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|114152190|sp|Q30Z93|SYP_DESDG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78219654|gb|ABB39003.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 574

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/265 (49%), Positives = 183/265 (69%), Gaps = 9/265 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +++P L+E P DAE+ SHKL++R GMI + + GIY +LPLG ++++   +I+R+E
Sbjct: 1   MRWSNFYIPTLKEAPADAEVVSHKLLIRAGMIRKLTSGIYIYLPLGLRSIEKAASIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q ADLW ESGR+D YGKE+LR++DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNSAGAQELLMPMVQPADLWQESGRWDFYGKELLRISDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   +G   SY  M+ +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFMMKDAYSFDRDAQGLDLSYRAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDF 239
           Y++IF R+GLK   + A+SG IGG  SHEF+VLA+TGE T  FC     D+   S N + 
Sbjct: 181 YMKIFSRMGLKFRAVEADSGSIGGSFSHEFMVLAETGEDTIAFCHD--CDY---SANVER 235

Query: 240 DDIISLNSIVEQWTAPYAATSDVHN 264
            +++     +++  AP A   +VH 
Sbjct: 236 AEVV---CTLDECDAPVAGVEEVHT 257



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 94/153 (61%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GTKYS  M   F   +GK+  + MG YGIG  RVVAA IE + D  GI+
Sbjct: 403 RGIEVGHVFKLGTKYSEAMGCKFLDENGKEQVMLMGCYGIGVSRVVAACIEQNSDENGIV 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF++ L+N+   +       +++Y  +   GCDV  DD  E+ G +F  ADL+G
Sbjct: 463 FPPPIAPFEVLLLNLDGKNDDVNARVDELYGAVQAAGCDVLMDDRNERPGVKFKDADLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            P+Q++VG K ++   VE K R TG + ++ ++
Sbjct: 523 VPMQLVVGGKGLARGIVEAKDRRTGEKTELPVD 555


>gi|320540052|ref|ZP_08039708.1| prolyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320029901|gb|EFW11924.1| prolyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 570

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+ENP DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKENPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFG+MRSREFLMKDAYSF  + +  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGIMRSREFLMKDAYSFHTSQDSLQVTYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YNKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 3/190 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           Q   P    +D+ N    D+ P+ +   +  RGIEVGHIF  GTKYS  M AT +G DG+
Sbjct: 374 QRDLPLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGR 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEK 367
           +  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H      A  E 
Sbjct: 434 NQVLTMGCYGIGVTRVVAAAIEQNHDERGIIWPDTIAPFQVAILPMNMHKSFRVQALAED 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++
Sbjct: 494 LYTTLRSHGIDVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRIGEKQ 553

Query: 428 DMSLEEVINY 437
            +  EE++N+
Sbjct: 554 MIKTEEIVNF 563


>gi|283835256|ref|ZP_06354997.1| proline--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291068967|gb|EFE07076.1| proline--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 572

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 191/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           + +          AP A  +    E      P N +  A  +E         +++LP+  
Sbjct: 237 EAV----------APKAPRAAATQEMTLVDTP-NAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|289830168|ref|ZP_06547590.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 282

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 193/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +          + S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDI----------VFSDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279


>gi|218703449|ref|YP_002410968.1| prolyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293403264|ref|ZP_06647361.1| prolyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|293408287|ref|ZP_06652127.1| prolyl-tRNA synthetase [Escherichia coli B354]
 gi|298378800|ref|ZP_06988684.1| prolyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300900763|ref|ZP_07118909.1| prolyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|301025919|ref|ZP_07189405.1| prolyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|331661569|ref|ZP_08362493.1| proline--tRNA ligase [Escherichia coli TA143]
 gi|226701283|sp|B7N862|SYP_ECOLU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218430546|emb|CAR11412.1| prolyl-tRNA synthetase [Escherichia coli UMN026]
 gi|284919970|emb|CBG33025.1| prolyl-tRNA synthetase [Escherichia coli 042]
 gi|291430179|gb|EFF03193.1| prolyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|291472538|gb|EFF15020.1| prolyl-tRNA synthetase [Escherichia coli B354]
 gi|298281134|gb|EFI22635.1| prolyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300355748|gb|EFJ71618.1| prolyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300395774|gb|EFJ79312.1| prolyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|331061484|gb|EGI33447.1| proline--tRNA ligase [Escherichia coli TA143]
 gi|332341528|gb|AEE54862.1| prolyl-tRNA synthetase ProS [Escherichia coli UMNK88]
          Length = 572

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 112/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|253689709|ref|YP_003018899.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259511609|sp|C6DDF6|SYP_PECCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|251756287|gb|ACT14363.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S D
Sbjct: 181 YSQIFSRMDLDFRAVQADTGSIGGNASHEFQVLAASGEDDIVFSTD 226



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E KHR  G ++ +   E++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKHRRIGEKQMIKTNEIV 563

Query: 436 NY 437
           ++
Sbjct: 564 DF 565


>gi|320180897|gb|EFW55819.1| prolyl-tRNA synthetase [Shigella boydii ATCC 9905]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|254037614|ref|ZP_04871691.1| prolyl-tRNA synthetase [Escherichia sp. 1_1_43]
 gi|226840720|gb|EEH72722.1| prolyl-tRNA synthetase [Escherichia sp. 1_1_43]
          Length = 590

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 242



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 402 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 461

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 462 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 521

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 522 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 581

Query: 436 NY 437
            Y
Sbjct: 582 EY 583


>gi|194428300|ref|ZP_03060842.1| prolyl-tRNA synthetase [Escherichia coli B171]
 gi|194413675|gb|EDX29955.1| prolyl-tRNA synthetase [Escherichia coli B171]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++  + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLSDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|262281159|ref|ZP_06058941.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257390|gb|EEY76126.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 571

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHANPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAFSTE 226



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGI+
Sbjct: 410 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIM 469

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G D+  DD  E+ G +F+  +L+
Sbjct: 470 WPQAIAPFEIAIVPMNAHKSPRTLEAAESLYAELQAQGFDILLDDRNERPGVKFSDLELM 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 530 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|309700402|emb|CBI99691.1| prolyl-tRNA synthetase [Escherichia coli ETEC H10407]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R    ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNCEKQLIKTGDIVD 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|300920118|ref|ZP_07136571.1| prolyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300412852|gb|EFJ96162.1| prolyl-tRNA synthetase [Escherichia coli MS 115-1]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|260866343|ref|YP_003232745.1| prolyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|257762699|dbj|BAI34194.1| prolyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++I
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDII 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|194435019|ref|ZP_03067260.1| prolyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|300902015|ref|ZP_07120042.1| prolyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|301305332|ref|ZP_07211428.1| prolyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|331651100|ref|ZP_08352128.1| proline--tRNA ligase [Escherichia coli M718]
 gi|331671699|ref|ZP_08372497.1| proline--tRNA ligase [Escherichia coli TA280]
 gi|194416755|gb|EDX32883.1| prolyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|300405901|gb|EFJ89439.1| prolyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300839437|gb|EFK67197.1| prolyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|315254998|gb|EFU34966.1| prolyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|331051554|gb|EGI23603.1| proline--tRNA ligase [Escherichia coli M718]
 gi|331071544|gb|EGI42901.1| proline--tRNA ligase [Escherichia coli TA280]
 gi|332095137|gb|EGJ00169.1| prolyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332097597|gb|EGJ02574.1| prolyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|332282869|ref|ZP_08395282.1| prolyl-tRNA synthetase [Shigella sp. D9]
 gi|332105221|gb|EGJ08567.1| prolyl-tRNA synthetase [Shigella sp. D9]
          Length = 590

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 242



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 403 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 462

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 463 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 522

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 523 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 582

Query: 437 Y 437
           Y
Sbjct: 583 Y 583


>gi|218885229|ref|YP_002434550.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226699140|sp|B8DNM5|SYP_DESVM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218756183|gb|ACL07082.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 575

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 161/221 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P DAE+ SHKL+ R GMI + + GIY ++PLG KA++   AI+REE
Sbjct: 1   MRWSNCYIPTLKEAPADAEVVSHKLLTRAGMIRKLTSGIYIYMPLGLKAIEKTAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q ADLW ESGR++ YGKE+LR  DRN +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALELSMPMVQPADLWQESGRWEFYGKELLRFQDRNGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDRDEAGADKSYWAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  +F RLGL+   + A+SG IGG  SHEF+VLADTGE  +
Sbjct: 181 YQNVFKRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTI 221



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 93/153 (60%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GTKYS P+  TF   DGK+  + MG YGIG  RVVA+ IE +HD  GI+
Sbjct: 404 RGIEVGHVFKLGTKYSEPLKCTFLDEDGKEKVMVMGCYGIGVSRVVASCIEQNHDADGIV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF+  L  +   +       E+ YA L   G DV  DD  E+ G +F  ADL+G
Sbjct: 464 FPPPIAPFEAVLCCLDPKNGETLGKAEEFYAELKAQGVDVILDDRDERPGVKFKDADLVG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            PLQ++VG K ++   VE K R TG + ++ +E
Sbjct: 524 MPLQLVVGGKGLARGIVEAKDRRTGEKTELPVE 556


>gi|15799876|ref|NP_285888.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15829450|ref|NP_308223.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168752178|ref|ZP_02777200.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168765280|ref|ZP_02790287.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168769963|ref|ZP_02794970.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168777697|ref|ZP_02802704.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168782925|ref|ZP_02807932.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168789305|ref|ZP_02814312.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168802460|ref|ZP_02827467.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|195939891|ref|ZP_03085273.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208809448|ref|ZP_03251785.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208812619|ref|ZP_03253948.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208821168|ref|ZP_03261488.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209398549|ref|YP_002268803.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217324314|ref|ZP_03440398.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254791327|ref|YP_003076164.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|261226949|ref|ZP_05941230.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255353|ref|ZP_05947886.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281017|ref|YP_003497835.1| Prolyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|81848971|sp|Q8X8W2|SYP_ECO57 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731431|sp|B5Z0H4|SYP_ECO5E RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12512925|gb|AAG54496.1|AE005195_5 proline tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13359652|dbj|BAB33619.1| proline tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187767123|gb|EDU30967.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188013912|gb|EDU52034.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|188999651|gb|EDU68637.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189361055|gb|EDU79474.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189364925|gb|EDU83341.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189371068|gb|EDU89484.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189375548|gb|EDU93964.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|208729249|gb|EDZ78850.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208733896|gb|EDZ82583.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208741291|gb|EDZ88973.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209159949|gb|ACI37382.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209745624|gb|ACI71119.1| proline tRNA synthetase [Escherichia coli]
 gi|209745626|gb|ACI71120.1| proline tRNA synthetase [Escherichia coli]
 gi|209745628|gb|ACI71121.1| proline tRNA synthetase [Escherichia coli]
 gi|209745630|gb|ACI71122.1| proline tRNA synthetase [Escherichia coli]
 gi|209745632|gb|ACI71123.1| proline tRNA synthetase [Escherichia coli]
 gi|217320535|gb|EEC28959.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254590727|gb|ACT70088.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290760890|gb|ADD54851.1| Prolyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320190279|gb|EFW64929.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320640001|gb|EFX09586.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320644771|gb|EFX13815.1| prolyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320652927|gb|EFX21165.1| prolyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320658315|gb|EFX26044.1| prolyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663625|gb|EFX30909.1| prolyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668938|gb|EFX35733.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
 gi|326339750|gb|EGD63558.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|326345084|gb|EGD68827.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|191167053|ref|ZP_03028875.1| prolyl-tRNA synthetase [Escherichia coli B7A]
 gi|309796373|ref|ZP_07690782.1| prolyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|190902946|gb|EDV62673.1| prolyl-tRNA synthetase [Escherichia coli B7A]
 gi|308120077|gb|EFO57339.1| prolyl-tRNA synthetase [Escherichia coli MS 145-7]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|218693660|ref|YP_002401327.1| prolyl-tRNA synthetase [Escherichia coli 55989]
 gi|256021628|ref|ZP_05435493.1| prolyl-tRNA synthetase [Shigella sp. D9]
 gi|293476853|ref|ZP_06665261.1| prolyl-tRNA synthetase [Escherichia coli B088]
 gi|300921804|ref|ZP_07137964.1| prolyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|301325160|ref|ZP_07218690.1| prolyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|254782900|sp|B7LHA4|SYP_ECO55 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218350392|emb|CAU96077.1| prolyl-tRNA synthetase [Escherichia coli 55989]
 gi|291321306|gb|EFE60748.1| prolyl-tRNA synthetase [Escherichia coli B088]
 gi|300421799|gb|EFK05110.1| prolyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300847966|gb|EFK75726.1| prolyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|323935035|gb|EGB31408.1| prolyl-tRNA synthetase [Escherichia coli E1520]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|152968789|ref|YP_001333898.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|166980131|sp|A6T4Z7|SYP_KLEP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150953638|gb|ABR75668.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 173/244 (70%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIIS 244
           + ++
Sbjct: 237 EAVA 240



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA LS  
Sbjct: 444 YGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELSAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|30061751|ref|NP_835922.1| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56479623|ref|NP_706140.2| prolyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|74310815|ref|YP_309234.1| prolyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|82542793|ref|YP_406740.1| prolyl-tRNA synthetase [Shigella boydii Sb227]
 gi|157159661|ref|YP_001456979.1| prolyl-tRNA synthetase [Escherichia coli HS]
 gi|162139361|ref|YP_687766.2| prolyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|170021452|ref|YP_001726406.1| prolyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|187730943|ref|YP_001878997.1| prolyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|188494186|ref|ZP_03001456.1| prolyl-tRNA synthetase [Escherichia coli 53638]
 gi|193063143|ref|ZP_03044234.1| prolyl-tRNA synthetase [Escherichia coli E22]
 gi|193067639|ref|ZP_03048606.1| prolyl-tRNA synthetase [Escherichia coli E110019]
 gi|194439920|ref|ZP_03071982.1| prolyl-tRNA synthetase [Escherichia coli 101-1]
 gi|209917387|ref|YP_002291471.1| prolyl-tRNA synthetase [Escherichia coli SE11]
 gi|218552775|ref|YP_002385688.1| prolyl-tRNA synthetase [Escherichia coli IAI1]
 gi|253774778|ref|YP_003037609.1| prolyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160314|ref|YP_003043422.1| prolyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|256025507|ref|ZP_05439372.1| prolyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|260842426|ref|YP_003220204.1| prolyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260853405|ref|YP_003227296.1| prolyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|293418080|ref|ZP_06660702.1| prolyl-tRNA synthetase [Escherichia coli B185]
 gi|297519907|ref|ZP_06938293.1| prolyl-tRNA synthetase [Escherichia coli OP50]
 gi|300820114|ref|ZP_07100286.1| prolyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300825388|ref|ZP_07105464.1| prolyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300932153|ref|ZP_07147436.1| prolyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300949771|ref|ZP_07163746.1| prolyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300956080|ref|ZP_07168404.1| prolyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301028690|ref|ZP_07191910.1| prolyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|301646520|ref|ZP_07246394.1| prolyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|307136795|ref|ZP_07496151.1| prolyl-tRNA synthetase [Escherichia coli H736]
 gi|307311357|ref|ZP_07590999.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|331640649|ref|ZP_08341797.1| proline--tRNA ligase [Escherichia coli H736]
 gi|331666440|ref|ZP_08367321.1| proline--tRNA ligase [Escherichia coli TA271]
 gi|331680776|ref|ZP_08381435.1| proline--tRNA ligase [Escherichia coli H591]
 gi|81839318|sp|Q83MC8|SYP_SHIFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152250|sp|Q325U6|SYP_SHIBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152252|sp|Q3Z5G3|SYP_SHISS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148887036|sp|Q0T815|SYP_SHIF8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980120|sp|A7ZWE2|SYP_ECOHS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083498|sp|B1IQE6|SYP_ECOLC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701281|sp|B7M1Z9|SYP_ECO8A RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701284|sp|B6HZR3|SYP_ECOSE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701339|sp|B2U338|SYP_SHIB3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30039993|gb|AAP15727.1| proline tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56383174|gb|AAN41847.2| proline tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|73854292|gb|AAZ86999.1| proline tRNA synthetase [Shigella sonnei Ss046]
 gi|81244204|gb|ABB64912.1| proline tRNA synthetase [Shigella boydii Sb227]
 gi|157065341|gb|ABV04596.1| prolyl-tRNA synthetase [Escherichia coli HS]
 gi|169756380|gb|ACA79079.1| prolyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|187427935|gb|ACD07209.1| prolyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|188489385|gb|EDU64488.1| prolyl-tRNA synthetase [Escherichia coli 53638]
 gi|192931051|gb|EDV83654.1| prolyl-tRNA synthetase [Escherichia coli E22]
 gi|192959051|gb|EDV89487.1| prolyl-tRNA synthetase [Escherichia coli E110019]
 gi|194421166|gb|EDX37191.1| prolyl-tRNA synthetase [Escherichia coli 101-1]
 gi|209910646|dbj|BAG75720.1| prolyl-tRNA synthase [Escherichia coli SE11]
 gi|218359543|emb|CAQ97083.1| prolyl-tRNA synthetase [Escherichia coli IAI1]
 gi|242376026|emb|CAQ30709.1| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253325822|gb|ACT30424.1| prolyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972215|gb|ACT37886.1| prolyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253976424|gb|ACT42094.1| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|257752054|dbj|BAI23556.1| prolyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257757573|dbj|BAI29070.1| prolyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|281599550|gb|ADA72534.1| putative prolyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|291430798|gb|EFF03796.1| prolyl-tRNA synthetase [Escherichia coli B185]
 gi|299878289|gb|EFI86500.1| prolyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300317074|gb|EFJ66858.1| prolyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300450836|gb|EFK14456.1| prolyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300460090|gb|EFK23583.1| prolyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300522148|gb|EFK43217.1| prolyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300527328|gb|EFK48390.1| prolyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|301075273|gb|EFK90079.1| prolyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|306908336|gb|EFN38834.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|315059413|gb|ADT73740.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|315616320|gb|EFU96938.1| prolyl-tRNA synthetase [Escherichia coli 3431]
 gi|320173324|gb|EFW48527.1| prolyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|320186617|gb|EFW61342.1| prolyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|320200278|gb|EFW74864.1| prolyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|323157966|gb|EFZ44068.1| prolyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|323165899|gb|EFZ51681.1| prolyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323170987|gb|EFZ56636.1| prolyl-tRNA synthetase [Escherichia coli LT-68]
 gi|323380028|gb|ADX52296.1| prolyl-tRNA synthetase [Escherichia coli KO11]
 gi|323939929|gb|EGB36127.1| prolyl-tRNA synthetase [Escherichia coli E482]
 gi|323945673|gb|EGB41722.1| prolyl-tRNA synthetase [Escherichia coli H120]
 gi|323959956|gb|EGB55603.1| prolyl-tRNA synthetase [Escherichia coli H489]
 gi|323970674|gb|EGB65930.1| prolyl-tRNA synthetase [Escherichia coli TA007]
 gi|324019415|gb|EGB88634.1| prolyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|324118316|gb|EGC12211.1| prolyl-tRNA synthetase [Escherichia coli E1167]
 gi|331040395|gb|EGI12602.1| proline--tRNA ligase [Escherichia coli H736]
 gi|331066651|gb|EGI38528.1| proline--tRNA ligase [Escherichia coli TA271]
 gi|331072239|gb|EGI43575.1| proline--tRNA ligase [Escherichia coli H591]
 gi|332762067|gb|EGJ92338.1| prolyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|332765044|gb|EGJ95272.1| prolyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332768698|gb|EGJ98878.1| prolyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333009265|gb|EGK28721.1| prolyl-tRNA synthetase [Shigella flexneri K-218]
 gi|333010690|gb|EGK30123.1| prolyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333011036|gb|EGK30455.1| prolyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333021831|gb|EGK41080.1| prolyl-tRNA synthetase [Shigella flexneri K-227]
 gi|333022223|gb|EGK41462.1| prolyl-tRNA synthetase [Shigella flexneri K-304]
          Length = 572

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|291286279|ref|YP_003503095.1| prolyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883439|gb|ADD67139.1| prolyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 570

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/258 (51%), Positives = 174/258 (67%), Gaps = 11/258 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+E P DAE+ SHKLM R GMI + + GIYS+LPLG   +  V  I+R+ 
Sbjct: 1   MRYSKYFIPTLREVPADAEVVSHKLMARAGMIKKVASGIYSYLPLGLVVIKKVEDIVRKC 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A+E+ +P++Q A+LW ESGR+D YGKE+LR+ DR+++   YGPTHEEV TDI RS
Sbjct: 61  MNEADAVELMMPSVQPAELWQESGRWDFYGKELLRIKDRHNREFCYGPTHEEVTTDIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 YINSYKALPVNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDMDDAGANISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF   GL+   + A+SG IGG  SHEF+VLA TGE          DF I   + D+ 
Sbjct: 181 YRRIFEMCGLRYKVVDADSGAIGGSFSHEFMVLASTGE----------DFVISCNSCDYS 230

Query: 241 DIISLNSIVEQWTAPYAA 258
             +   + V + T P++ 
Sbjct: 231 ANVE-KATVRKSTEPFSG 247



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 98/157 (62%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GTKYS  M+A +   DGK     MG YGIG  RVVAA IE +HD KGI+
Sbjct: 402 KGIEVGHIFKLGTKYSSSMNAMYLDKDGKRKPFVMGCYGIGITRVVAAAIEQNHDEKGIV 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APFKI ++ +   DQ   +  E IY  L   G +V  DD  E+ G +F  A+L+G
Sbjct: 462 WPVNLAPFKICVLPLAMKDQEVSETAENIYKDLINKGVEVLLDDRDERPGVKFNDAELIG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PL+V++G K ++  K+E+  R +G   ++ +E  ++
Sbjct: 522 IPLRVVIGKKTLAQGKIEVTVRASGESYEVDVEGCVD 558


>gi|325123334|gb|ADY82857.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 571

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTE 226



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGII
Sbjct: 410 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGII 469

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G DV  DD  E+ G +F+  +L+
Sbjct: 470 WPQAIAPFEIAIVPMNAHKSPRTLEAAESLYAELQAQGFDVLLDDRNERPGVKFSDLELM 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 530 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|149909734|ref|ZP_01898386.1| prolyl-tRNA synthetase [Moritella sp. PE36]
 gi|149807248|gb|EDM67203.1| prolyl-tRNA synthetase [Moritella sp. PE36]
          Length = 573

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GM+ + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRSSNYLLSTLKETPNDAEVISHQLMLRAGMVRRLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E  +P +Q ADLW E+GR D +G E+LR+ DR++++ + GPTHEEV+TDI R 
Sbjct: 61  MDKAGAVETLMPMVQPADLWQETGRIDKFGPELLRINDRHNRSFVLGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF ++ E    +YNKM  +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHISDECLNDTYNKMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL+  P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YCNIFERIGLEYRPVLADTGSIGGAVSHEFHVLAESGEDDIVFS 224



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 102/159 (64%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT+Y+  M A      GK   + MG YGIG  R+VAA IE +HD  GII
Sbjct: 409 RGIEVGHIFQLGTQYAEAMKAGVLNMQGKQQIMTMGCYGIGVSRIVAAAIEQNHDENGII 468

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           W +S+AP+K+S+I +  H     ++A EKIYA L   G +VF+DD  E+ G  FA ++L+
Sbjct: 469 WNESIAPYKVSIIPMNMHKSADVKEAAEKIYADLQAAGIEVFFDDRKERPGVMFADSELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +I+G + + +  VE K RLTG + ++++ +++ +
Sbjct: 529 GIPHNIIIGDRSLKNGLVEHKLRLTGDKTEVAVADIVAH 567


>gi|254496505|ref|ZP_05109377.1| prolyl-tRNA synthase [Legionella drancourtii LLAP12]
 gi|254354272|gb|EET12935.1| prolyl-tRNA synthase [Legionella drancourtii LLAP12]
          Length = 577

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LMLRTGMI +   G+Y+W+PLG K L  V  I+REE
Sbjct: 9   MRASQWFLATLKETPNDAEIVSHQLMLRTGMIRKLGSGLYTWMPLGLKVLRKVEHIVREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  ++E+ +P +Q A+LW E+GR++++G ++L + D N +   YGPTHEEV+TDI R+
Sbjct: 69  MNRINSVELLMPAVQPAELWQETGRWETFGGQLLTMKDSNGREYCYGPTHEEVITDIMRN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E  +++Y  M+ +
Sbjct: 129 ELQSYKQLPRCFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLNLESLQNTYKDMYQA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  +F S
Sbjct: 189 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLADSGEDLIFYS 232



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 3/178 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N K  D  P+ K    S RGIEVGH+F  G KY+  M+A      G+   + MG YG
Sbjct: 391 DLRNVKEGDISPDGKGTLHSCRGIEVGHVFQLGDKYAKAMNAAVINEQGQLETMMMGCYG 450

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGC 377
           +G  RVVAA IE  HD +GIIWP ++APF++ +I +  H  Q  +D  + +Y +    G 
Sbjct: 451 LGITRVVAAAIEQHHDEQGIIWPSNIAPFQVVIIPLNGHKSQAVKDQADVLYKQFRNAGI 510

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DV  DD  E+ G+ FA  DL+G P +++V  + +  + VE K R TG  + + L   +
Sbjct: 511 DVLLDDRNERAGALFADHDLIGVPHRLVVSDRNLEQNCVEYKSRATGETKSLDLNTAV 568


>gi|293611014|ref|ZP_06693313.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826666|gb|EFF85032.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 571

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTE 226



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGII
Sbjct: 410 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGII 469

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G DV  DD  E+ G +F+  +L+
Sbjct: 470 WPQAIAPFEIAIVPMNAHKSPRTLEAAESLYAELQAQGFDVLLDDRNERPGVKFSDLELM 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 530 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|82775586|ref|YP_401933.1| prolyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|114152251|sp|Q32JR3|SYP_SHIDS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81239734|gb|ABB60444.1| proline tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 572

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|238893191|ref|YP_002917925.1| prolyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545507|dbj|BAH61858.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 572

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 173/244 (70%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIIS 244
           + ++
Sbjct: 237 EAVA 240



 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 109/182 (59%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y  LS  
Sbjct: 444 YGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYTELSAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|37524693|ref|NP_928037.1| prolyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|81834075|sp|Q7N8M7|SYP_PHOLL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|36784118|emb|CAE12987.1| prolyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 572

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/277 (48%), Positives = 179/277 (64%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGIRVLKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNTGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T    + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHATQTSLQETYDNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-------------- 226
           Y +IF R+GL    + A++G IGG  SHEF VLA +GE  +  S +              
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLAASGEDDIVFSTESNYAANIELAEAVA 240

Query: 227 -FMDFPIPSEN---TDFDDIISLNSIVEQWTAPYAAT 259
              D  +P+E+    D  +  ++  +VEQ+  P   T
Sbjct: 241 PAHDRAVPTEDMHLVDTPNAKTIAELVEQFNLPIEKT 277



 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG +  V
Sbjct: 380 PVPEVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDAMKATVQGEDGHNQIV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H     ++  EK+YA 
Sbjct: 440 TMGCYGIGVTRIVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSYRVKEVAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  V++G + + + +VE KHR    ++ + L
Sbjct: 500 LRASGIDVIFDDRKERPGVMFADMELIGVPHTVVIGDRNLDNGEVEYKHRRNDEKQMLKL 559

Query: 432 EEVINYASHRF 442
           + V++Y   + 
Sbjct: 560 DNVVDYLKQQL 570


>gi|157156008|ref|YP_001461365.1| prolyl-tRNA synthetase [Escherichia coli E24377A]
 gi|166980119|sp|A7ZHT6|SYP_ECO24 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157078038|gb|ABV17746.1| prolyl-tRNA synthetase [Escherichia coli E24377A]
          Length = 572

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRIGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|16128187|ref|NP_414736.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|89107075|ref|AP_000855.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|170079831|ref|YP_001729151.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899593|ref|YP_002925389.1| prolyl-tRNA synthetase [Escherichia coli BW2952]
 gi|34395980|sp|P16659|SYP_ECOLI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Global RNA
           synthesis factor; AltName: Full=Proline--tRNA ligase;
           Short=ProRS
 gi|226701282|sp|B1XD64|SYP_ECODH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511593|sp|C4ZRT7|SYP_ECOBW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1552770|gb|AAB08622.1| proline-tRNA ligase [Escherichia coli]
 gi|1786392|gb|AAC73305.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|85674379|dbj|BAA77870.2| prolyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|169887666|gb|ACB01373.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863283|gb|ACR65281.1| prolyl-tRNA synthetase [Escherichia coli BW2952]
 gi|260450602|gb|ACX41024.1| prolyl-tRNA synthetase [Escherichia coli DH1]
 gi|315134885|dbj|BAJ42044.1| prolyl-tRNA synthetase [Escherichia coli DH1]
          Length = 572

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P  + + +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|322657154|gb|EFY53437.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322686289|gb|EFY82273.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
          Length = 277

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/230 (54%), Positives = 166/230 (72%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S D  D+
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFS-DVSDY 229


>gi|299768873|ref|YP_003730899.1| prolyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298698961|gb|ADI89526.1| prolyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 571

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTE 226



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGI+
Sbjct: 410 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIM 469

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G DV  DD  E+ G +F+  +L+
Sbjct: 470 WPQAIAPFEIAIVPMNAHKSPRTLEAAEALYAELQAQGFDVLLDDRNERPGVKFSDLELM 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 530 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 566


>gi|261245474|emb|CBG23264.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
          Length = 572

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLVSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +            S+ +D+ 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF----------SDVSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   AAT ++    L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAIAPQTPRAAATQEM---TLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|329996732|ref|ZP_08302530.1| proline--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|328539331|gb|EGF65355.1| proline--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 572

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 173/244 (70%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIIS 244
           + ++
Sbjct: 237 EAVA 240



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA LS  
Sbjct: 444 YGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELSAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|253988145|ref|YP_003039501.1| prolyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779595|emb|CAQ82756.1| prolyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 574

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 163/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGIRVLKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFADRGDRPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+GL    + A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLAASGEDDIVFSTE 226



 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG +  +
Sbjct: 380 PIPEIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDAMKATVQGEDGHNQII 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H     ++  EK+YA 
Sbjct: 440 TMGCYGIGVTRIVAAAIEQNHDNRGIIWPDAIAPFQVAILPMNMHKSYRVKEIAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + +   +VE K+R    ++ + L
Sbjct: 500 LRACGIDVIFDDRKERPGVMFADMELIGVPHTIVIGDRNLDSGEVEYKYRRCDDKQMLKL 559

Query: 432 EEVINYASHRF 442
           + V+++   + 
Sbjct: 560 DCVVDHLKQQL 570


>gi|50122450|ref|YP_051617.1| prolyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|81827028|sp|Q6D1B9|SYP_ERWCT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49612976|emb|CAG76427.1| prolyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 572

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYDTMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLASSGEDDIVFSTE 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 109/182 (59%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNNDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   E+I
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRVGEKQMIKTSEII 563

Query: 436 NY 437
           ++
Sbjct: 564 DF 565


>gi|186477394|ref|YP_001858864.1| prolyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|226699127|sp|B2JHD3|SYP_BURP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|184193853|gb|ACC71818.1| prolyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 578

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/229 (56%), Positives = 169/229 (73%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIADTGEDDIAYCPTSDF 229



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+ATF    GK   +
Sbjct: 382 PEPVVADIRNVKKDDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMNATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
           QMG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +  +D+    R+  +K++ 
Sbjct: 442 QMGCYGIGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPM-GYDRSDAVREQADKLHD 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 ELTAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 551


>gi|237729500|ref|ZP_04559981.1| prolyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226909229|gb|EEH95147.1| prolyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 590

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 174/244 (71%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D++ + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVLMPVVQPSELWEESGRWEQYGPELLRIADRGDRSFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 254

Query: 241 DIIS 244
           + ++
Sbjct: 255 EAVA 258



 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG 
Sbjct: 402 VADIRNVVAGDPSPDGKGTLMIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQTLTMGC 461

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 462 YGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAQ 521

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G +E +   +++
Sbjct: 522 GIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKELIKTGDIV 581

Query: 436 NY 437
           ++
Sbjct: 582 DF 583


>gi|261822741|ref|YP_003260847.1| prolyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261606754|gb|ACX89240.1| prolyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 572

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQTTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVFSTE 226



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   E+I
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRIGEKQMIKTGEII 563

Query: 436 NY 437
           ++
Sbjct: 564 DF 565


>gi|323527403|ref|YP_004229556.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323384405|gb|ADX56496.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 578

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/229 (56%), Positives = 168/229 (73%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  + +C + DF
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPTSDF 229



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT    +GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDENGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +     +  R+  +K+YA 
Sbjct: 442 EMGCYGVGITRILGAAIEQNFDEKGIIWPESIAPFEVVLCPMGYDRSEAVREQADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 502 LVDAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKEGKLEYQGR 551


>gi|288937023|ref|YP_003441082.1| prolyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|288891732|gb|ADC60050.1| prolyl-tRNA synthetase [Klebsiella variicola At-22]
          Length = 572

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 173/244 (70%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIIS 244
           + ++
Sbjct: 237 EAVA 240



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M+A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAMNAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAH 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|261338808|ref|ZP_05966666.1| hypothetical protein ENTCAN_05003 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318631|gb|EFC57569.1| proline--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 572

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           + +          AP A  +    E      P N +  A  +E         +++LP+  
Sbjct: 237 EAL----------APKAPRAAATEEMTLVDTP-NAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  G KYS  M+A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGDKYSRAMNAAVQGEDGRNQVLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDNIAPFQVAILPMNMHKSYRVQELAEKLYAELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R +G ++ +   +++
Sbjct: 504 GVDVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIEYKYRRSGEKQMIKTGDIL 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|206579512|ref|YP_002240318.1| prolyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|226701300|sp|B5Y1H7|SYP_KLEP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206568570|gb|ACI10346.1| prolyl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 572

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 173/244 (70%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIIS 244
           + ++
Sbjct: 237 EAVA 240



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M+A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAMNAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAH 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|157371993|ref|YP_001479982.1| prolyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166980154|sp|A8GIB4|SYP_SERP5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157323757|gb|ABV42854.1| prolyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 572

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 188/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVCMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYEAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S            +DF 
Sbjct: 181 YSKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVFST----------GSDFA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   V     P AA S+    ++ D+   N +  A  +E         ++ LP++ 
Sbjct: 231 ANIELAEAVAP-AEPRAAASE--ELRIVDT--PNAKTIAELVE---------QFQLPVTK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H      A  E++Y  
Sbjct: 440 TMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVQALAEELYNT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSEEIEYKNRRVGEKQMIKT 559

Query: 432 EEVINY 437
            EVI++
Sbjct: 560 GEVIDF 565


>gi|313672947|ref|YP_004051058.1| prolyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939703|gb|ADR18895.1| prolyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 572

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 170/239 (71%), Gaps = 10/239 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+ENP DAE+ SHKLM+R GMI + + GIY++LP+G + +  V  IIR+ 
Sbjct: 1   MRLSKYFVPTLRENPSDAEVVSHKLMVRAGMIRKVAAGIYNYLPMGLRVIRKVENIIRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +  A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TDI R+
Sbjct: 61  MNEAGAIEILMPAVVPAELWKESGRWNVYGKELLRFKDRHDRDFCMGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  EG++ SY  M  +
Sbjct: 121 EIKSYKDLPVNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDVDDEGAEKSYGLMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y +IF   GLK   + A+SG IGG+ SHEF+V A+TGE          DF I  ++ D+
Sbjct: 181 YCKIFESCGLKYKVVEADSGAIGGNFSHEFMVTAETGE----------DFVISCDSCDY 229



 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 135/258 (52%), Gaps = 18/258 (6%)

Query: 195 MRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           ++A +GP+G  G +     + AD         K   ++ +     D    I L ++    
Sbjct: 323 VKATNGPLGFSGPIGINVKIYADNA------VKKLKNYVVGGNEKD----IHLINVNHTR 372

Query: 253 TAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                A SD  N K  D  P+     V  +GIEVGHIF  GTKYS  M+AT+   DGK  
Sbjct: 373 DFKVTAFSDFINAKPGDKCPKCGGTYVITKGIEVGHIFKLGTKYSKSMNATYLDKDGKQQ 432

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           Y+ MG YGIG  R  AA IE +HD KGIIWP  +APF++ +I I   D+   +  E +Y 
Sbjct: 433 YIVMGCYGIGVGRTAAAAIEQNHDEKGIIWPIQIAPFEVVIIPINTDDEDVVNLSETLYK 492

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IR 426
           +L K   +V  DD  E+ G +F  ADL+G+P++V +G K + + +VEI  R TG     +
Sbjct: 493 KLLKKNVEVIIDDRNERAGVKFNDADLVGYPIRVNIGKKTLENGEVEIVIRKTGDKINCK 552

Query: 427 EDMSLEEVINYASHRFSN 444
           +D +L E++      ++N
Sbjct: 553 KDDALSEILRIREELYNN 570


>gi|95930704|ref|ZP_01313437.1| prolyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95133184|gb|EAT14850.1| prolyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 571

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y LP L+ENP DAEI SH+LM+R GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRLTEYLLPTLKENPADAEIVSHQLMMRAGMIRKVAAGIYTYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +  A LW ESGR++ YGKE+LR+ DR D     GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAMELLMPMVVPAGLWEESGRWEQYGKELLRIRDRKDTEFCLGPTHEEVITDVVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFDL   G+  +Y KM+ +
Sbjct: 121 TVRSYRQLPLNLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDLEDAGADTAYEKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF R GLK   + A++G IGG  SHEF+VLA++GE  +  S D  D+    E    
Sbjct: 181 YQRIFKRCGLKFRAVEADTGNIGGSSSHEFMVLAESGEDAIV-SCDQCDYAANVEKAQM 238



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 99/158 (62%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GTKYS  + AT   A+GK+  + MG YGIG  R VAA IE +HD +G+I
Sbjct: 403 RGIEVGHVFKLGTKYSEALGATVLNAEGKEAPLVMGCYGIGIGRTVAAAIEQNHDDQGVI 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF++ +  +   D+    A  ++Y +L   G +V  DD  E+ GS+F  A+L+G
Sbjct: 463 FPMPIAPFQVIITLLNPKDEQVMQAGSELYQQLMDAGVEVLLDDRDERPGSKFKDAELIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            P++V VG++ + +   E++ RL G R  M + E +++
Sbjct: 523 IPIRVTVGNRALKEGAFEVQKRLEGERMMMPVAETLSW 560


>gi|170695316|ref|ZP_02886462.1| prolyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139716|gb|EDT07898.1| prolyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 578

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/229 (56%), Positives = 168/229 (73%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  + +C + DF
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPTSDF 229



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 112/198 (56%), Gaps = 11/198 (5%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEV 284
           DF + S   DF      ++    W    P    +D+ + K  D  P+ K V    RGIEV
Sbjct: 360 DFVVGSNEVDF------HTTGVNWGRDLPEPVVADIRDVKKGDPSPDGKGVLDICRGIEV 413

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GTKYS  M+AT    +GK   ++MG YG+G  R++ A IE + D KGIIWP+S+
Sbjct: 414 GHVFQLGTKYSEAMNATCLDENGKPQPMEMGCYGVGITRILGAAIEQNFDDKGIIWPESI 473

Query: 345 APFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF++ L  +     +  R+  +K+YA L + G DV  DD GE+ G  FA  +L+G P +
Sbjct: 474 APFEVVLCPMGYDRSEAVREQADKLYAELVEAGIDVILDDRGERPGVMFADWELIGVPHR 533

Query: 404 VIVGSKFVSDSKVEIKHR 421
           +++G + + + K+E + R
Sbjct: 534 LVIGDRGLKEGKLEYQGR 551


>gi|296101364|ref|YP_003611510.1| prolyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055823|gb|ADF60561.1| prolyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 572

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/244 (52%), Positives = 173/244 (70%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSHESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIIS 244
           + ++
Sbjct: 237 EALA 240



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 112/182 (61%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  G KYS  ++A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGDKYSRALNAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDNIAPFQVAILPMNMHKSYRVQELAEKLYAELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R +G ++ +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIEYKYRRSGEKQMIKTGDIL 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|227327749|ref|ZP_03831773.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 572

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVFSTE 226



 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 109/181 (60%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG Y
Sbjct: 385 ADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  E IY +L   G
Sbjct: 445 GIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAKG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   E+I+
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRGGEKQMIKTSEIID 564

Query: 437 Y 437
           +
Sbjct: 565 F 565


>gi|227114059|ref|ZP_03827715.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 572

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVFSTE 226



 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   E+I
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRVGEKQMIKTSEII 563

Query: 436 NY 437
           ++
Sbjct: 564 DF 565


>gi|296160514|ref|ZP_06843330.1| prolyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295889263|gb|EFG69065.1| prolyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 578

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/229 (56%), Positives = 170/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  + +C + DF
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPTSDF 229



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMNATCLDETGKPRPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D +GIIWP+S+APF++ L  +     +  R+A +K+YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDRGIIWPESIAPFEVVLCPMGYDRSEAVREAADKLYAT 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L + G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 502 LVEAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKLEYQGR 551


>gi|290512444|ref|ZP_06551810.1| prolyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|289774785|gb|EFD82787.1| prolyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 583

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 173/244 (70%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 12  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 72  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 132 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 192 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 247

Query: 241 DIIS 244
           + ++
Sbjct: 248 EAVA 251



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M+A  +G DG++  + MG 
Sbjct: 395 VADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAMNAAVQGEDGRNQILTMGC 454

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 455 YGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAH 514

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 515 GIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 574

Query: 436 NY 437
            Y
Sbjct: 575 EY 576


>gi|91785266|ref|YP_560472.1| prolyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123358448|sp|Q13U19|SYP_BURXL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91689220|gb|ABE32420.1| Prolyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 578

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/229 (56%), Positives = 170/229 (74%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  + +C + DF
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPTSDF 229



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMNATCLDETGKPRPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D +GIIWP+S+APF++ L  +     +  R+A +K+YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDRGIIWPESIAPFEVVLCPMGYDRSEAVREAADKLYAT 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L + G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 502 LLEAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKLEYQGR 551


>gi|323964912|gb|EGB60378.1| prolyl-tRNA synthetase [Escherichia coli M863]
 gi|327255174|gb|EGE66777.1| prolyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 572

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 112/182 (61%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|226951685|ref|ZP_03822149.1| prolyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|294651367|ref|ZP_06728686.1| proline--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837601|gb|EEH69984.1| prolyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|292822769|gb|EFF81653.1| proline--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 571

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+YSWLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYSWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGR++ YG E+LR  DR++   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPAALWEESGRFEQYGPELLRFKDRHNNDFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFSRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTE 226



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 101/184 (54%), Gaps = 3/184 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A +    D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK   
Sbjct: 382 ATFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGKPFT 441

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           V MG YGIG  RVVAA IE + D KGIIWP ++APF ++++ + AH      +A E +YA
Sbjct: 442 VTMGCYGIGVTRVVAAAIEQNFDDKGIIWPQAIAPFDVAIVPMNAHKSPRTVEAAEALYA 501

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      +++
Sbjct: 502 ELQAQGYDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEASNLN 561

Query: 431 LEEV 434
            EE+
Sbjct: 562 KEEL 565


>gi|116515089|ref|YP_802718.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256943|gb|ABJ90625.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 422

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 153/424 (36%), Positives = 235/424 (55%), Gaps = 27/424 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   KY L  L+E P++ E  SH+LMLR+GMI   S GIY+WLP G + +  +  II   
Sbjct: 1   MYTKKYLLSTLKEKPKNIESISHQLMLRSGMIRMLSSGIYTWLPTGYRIIKKITKIISSI 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G +E+ +P +Q  +LW +SGR   YG+E++++ DR +K  +  PTHEE +  I + 
Sbjct: 61  LNNHGCMEICMPIIQPENLWKKSGRKKLYGEELIKITDRRNKKYVLSPTHEEAINYICQQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP TFYQIQ KFRDE+RPRFGV+R+ EFLMKDAYSF +  +  K +Y  M   
Sbjct: 121 EIHSYKQLPITFYQIQKKFRDEIRPRFGVIRTIEFLMKDAYSFHINKDSLKKTYENMKNI 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF +L L    ++A S  +GG +S EF  +++ GE ++   K          N  F+
Sbjct: 181 YIKIFKKLKLNFKIVKAHSKIMGGSISDEFHAISEMGENKIIFLK--------KSNYAFN 232

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
                          Y   ++   +     L  E K +    IE+GHIF    KYS   +
Sbjct: 233 ---------------YNEFNEKKKKFKNYLLQKEKKLIKKNSIEIGHIFQIEKKYSKNTN 277

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAH 357
              +    K   + MG YGIG  R+++++IE +HD  GIIWP+ +APF++ +  IN+  +
Sbjct: 278 FYIQDKKNKKKLLNMGCYGIGINRIISSIIEQNHDKYGIIWPNCIAPFQVFILPINMYKN 337

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            ++ + A +     ++K   DV +D+  E +G  FA  +L+G P  +++    ++  KVE
Sbjct: 338 KKIKKIAKKLYKKLINK-NIDVLFDNRNESLGKMFADMNLIGIPFGILISKNTITSKKVE 396

Query: 418 IKHR 421
           +  R
Sbjct: 397 LYSR 400


>gi|306815206|ref|ZP_07449355.1| prolyl-tRNA synthetase [Escherichia coli NC101]
 gi|305850868|gb|EFM51323.1| prolyl-tRNA synthetase [Escherichia coli NC101]
          Length = 572

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 112/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGSLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|218547650|ref|YP_002381441.1| prolyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226701288|sp|B7LW79|SYP_ESCF3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218355191|emb|CAQ87798.1| prolyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|323975637|gb|EGB70733.1| prolyl-tRNA synthetase [Escherichia coli TW10509]
          Length = 572

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 112/182 (61%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
           +Y
Sbjct: 564 DY 565


>gi|110640415|ref|YP_668143.1| prolyl-tRNA synthetase [Escherichia coli 536]
 gi|117622479|ref|YP_851392.1| prolyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|161486316|ref|NP_752183.2| prolyl-tRNA synthetase [Escherichia coli CFT073]
 gi|162138494|ref|YP_539251.2| prolyl-tRNA synthetase [Escherichia coli UTI89]
 gi|170680577|ref|YP_001742323.1| prolyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|191171415|ref|ZP_03032964.1| prolyl-tRNA synthetase [Escherichia coli F11]
 gi|215485356|ref|YP_002327787.1| prolyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218557136|ref|YP_002390049.1| prolyl-tRNA synthetase [Escherichia coli S88]
 gi|218688070|ref|YP_002396282.1| prolyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227884892|ref|ZP_04002697.1| proline--tRNA ligase [Escherichia coli 83972]
 gi|300977725|ref|ZP_07174019.1| prolyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300990442|ref|ZP_07179210.1| prolyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|301046653|ref|ZP_07193784.1| prolyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|331661266|ref|ZP_08362198.1| proline--tRNA ligase [Escherichia coli TA206]
 gi|331681580|ref|ZP_08382217.1| proline--tRNA ligase [Escherichia coli H299]
 gi|114152192|sp|Q8FKZ4|SYP_ECOL6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152193|sp|Q1RFZ4|SYP_ECOUT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123148404|sp|Q0TLD7|SYP_ECOL5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112309|sp|A1A7N8|SYP_ECOK1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699141|sp|B7MBH6|SYP_ECO45 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701285|sp|B1LGZ7|SYP_ECOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782899|sp|B7UJ96|SYP_ECO27 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782901|sp|B7MP55|SYP_ECO81 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110342007|gb|ABG68244.1| prolyl-tRNA synthetase [Escherichia coli 536]
 gi|115511603|gb|ABI99677.1| prolyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|170518295|gb|ACB16473.1| prolyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|190908349|gb|EDV67939.1| prolyl-tRNA synthetase [Escherichia coli F11]
 gi|215263428|emb|CAS07748.1| prolyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218363905|emb|CAR01570.1| prolyl-tRNA synthetase [Escherichia coli S88]
 gi|218425634|emb|CAR06420.1| prolyl-tRNA synthetase [Escherichia coli ED1a]
 gi|222032025|emb|CAP74764.1| Prolyl-tRNA synthetase [Escherichia coli LF82]
 gi|227838141|gb|EEJ48607.1| proline--tRNA ligase [Escherichia coli 83972]
 gi|294489624|gb|ADE88380.1| prolyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|300301388|gb|EFJ57773.1| prolyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300305742|gb|EFJ60262.1| prolyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300409810|gb|EFJ93348.1| prolyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|307552047|gb|ADN44822.1| prolyl-tRNA synthetase [Escherichia coli ABU 83972]
 gi|307629771|gb|ADN74075.1| prolyl-tRNA synthetase [Escherichia coli UM146]
 gi|312944803|gb|ADR25630.1| prolyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285273|gb|EFU44718.1| prolyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315295532|gb|EFU54858.1| prolyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315300667|gb|EFU59894.1| prolyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|323950806|gb|EGB46683.1| prolyl-tRNA synthetase [Escherichia coli H252]
 gi|323955077|gb|EGB50853.1| prolyl-tRNA synthetase [Escherichia coli H263]
 gi|324008226|gb|EGB77445.1| prolyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|324014120|gb|EGB83339.1| prolyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|324112394|gb|EGC06371.1| prolyl-tRNA synthetase [Escherichia fergusonii B253]
 gi|325496126|gb|EGC93985.1| prolyl-tRNA synthetase [Escherichia fergusonii ECD227]
 gi|331052308|gb|EGI24347.1| proline--tRNA ligase [Escherichia coli TA206]
 gi|331081801|gb|EGI52962.1| proline--tRNA ligase [Escherichia coli H299]
          Length = 572

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 112/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|170768387|ref|ZP_02902840.1| prolyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170122491|gb|EDS91422.1| prolyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 572

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 112/182 (61%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
           ++
Sbjct: 564 DF 565


>gi|262044730|ref|ZP_06017778.1| proline-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037920|gb|EEW39143.1| proline-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 572

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 126/244 (51%), Positives = 173/244 (70%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P D+E+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADSEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D  D+   + N +F 
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS-DSSDY---AANIEFA 236

Query: 241 DIIS 244
           + ++
Sbjct: 237 EAVA 240



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA LS  
Sbjct: 444 YGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELSAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|209521097|ref|ZP_03269827.1| prolyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209498480|gb|EDZ98605.1| prolyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 578

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 135/257 (52%), Positives = 179/257 (69%), Gaps = 11/257 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIISHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQADFVMGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKD+YSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDSYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDFMDFPIPSENTD 238
           Y+RIF RLGL+   + A++G IGG  SHEF V+AD GE  + +C + DF      + N +
Sbjct: 181 YVRIFTRLGLEFRAVAADNGSIGGSGSHEFHVIADIGEDAIAYCPTSDF------AANVE 234

Query: 239 FDDIISLNSIVEQWTAP 255
             D + L   + Q  AP
Sbjct: 235 AADALPL---IAQRAAP 248



 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDETGKPRPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +  +D+    R+  +K+YA
Sbjct: 442 EMGCYGIGITRILGAAIEQNFDEKGIIWPESIAPFEVVLCPM-GYDRSDAVREQADKLYA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 501 ELVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKIEYQGR 551


>gi|237704354|ref|ZP_04534835.1| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|26106541|gb|AAN78727.1|AE016755_227 Prolyl-tRNA synthetase [Escherichia coli CFT073]
 gi|91070839|gb|ABE05720.1| prolyl-tRNA synthetase [Escherichia coli UTI89]
 gi|226902266|gb|EEH88525.1| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
          Length = 590

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 242



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 112/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 403 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 462

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 463 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 522

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 523 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 582

Query: 437 Y 437
           Y
Sbjct: 583 Y 583


>gi|291616370|ref|YP_003519112.1| ProS [Pantoea ananatis LMG 20103]
 gi|291151400|gb|ADD75984.1| ProS [Pantoea ananatis LMG 20103]
          Length = 572

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 132/277 (47%), Positives = 181/277 (65%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRVADRHERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS--KDFM---------- 228
           Y +IF+R+GL    ++A++G IGG  SHEF VLA +GE  V  S   DF           
Sbjct: 181 YSQIFNRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSTASDFAANIEFAEAVA 240

Query: 229 ---DFPIPSE---NTDFDDIISLNSIVEQWTAPYAAT 259
              D P P+E     D  +  ++  +V Q+  P   T
Sbjct: 241 PAGDRPAPAEEMREVDTPNTKTIAELVSQFQQPIEKT 277



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PMAQVADLRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +        ++  E++Y  
Sbjct: 440 TMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQKSFRVKELAEELYNT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G ++ +  
Sbjct: 500 LRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKARRAGEKQMIKQ 559

Query: 432 EEVINY 437
           +E++ +
Sbjct: 560 DEIVEF 565


>gi|149927159|ref|ZP_01915416.1| prolyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824098|gb|EDM83319.1| prolyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 586

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 143/338 (42%), Positives = 209/338 (61%), Gaps = 32/338 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL  L+E P DAE+ SH+LM+R GMI + + GIY+++P+G +++  V  I+REE
Sbjct: 1   MRATQFFLNTLKEAPADAEVISHQLMMRAGMIKRLAGGIYTYMPVGLRSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEKYGPELLRMKDRHDRDYVIGPTHEEVITDVVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REF+MKDAYSFD T E +  +Y+ M+ +
Sbjct: 121 EVKSYRQLPLNLYQIQTKFRDEIRPRFGVMRGREFVMKDAYSFDRTQEAALKTYDVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RIF RLGL    + A++G IGG+ SHEF V+ADTGE  + +C         PS  +D+
Sbjct: 181 YRRIFTRLGLNFRAVNADTGSIGGNRSHEFHVIADTGEDAIAYC---------PS--SDY 229

Query: 240 DDIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              + L   V     P A+ +   VH        P N    A   ++G          L 
Sbjct: 230 AANVELAEAVCTAQRPVASKTMDKVHT-------PGNSTCEAVAAQLG----------LA 272

Query: 298 MSATFKGADGKDHYVQMG-SYGIGAMRVVAAVIESSHD 334
           ++AT K     + Y++   +  +  +++V A++   H+
Sbjct: 273 LTATVKSVVFANEYLEKDETKPVKKVQIVLALVRGDHE 310



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 101/171 (59%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    SD+ N    D  P+ K V A  RGIEVGH+FY GTKYS  + A F   +GK   +
Sbjct: 388 PEPEVSDIRNVVEGDPSPDGKGVLAMCRGIEVGHVFYLGTKYSEALQAKFLEENGKPAVI 447

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYA 370
           +MG YGIG  R++ A IE + D +GIIWP S+APF++ L  I  K  D+V   A +K+Y 
Sbjct: 448 EMGCYGIGVTRILGAAIEQNFDDRGIIWPLSIAPFEVVLCPIGYKKSDEVKAQA-DKLYQ 506

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD  E+ G  FA  +L+G PL+V +G + + + KVE + R
Sbjct: 507 MLKDAGVDVMLDDRDERPGVMFADWELIGVPLRVTLGDRGLKEGKVEFQSR 557


>gi|242238324|ref|YP_002986505.1| prolyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242130381|gb|ACS84683.1| prolyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 572

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 131/277 (47%), Positives = 178/277 (64%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFG+MR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGIMRAREFLMKDAYSFHTTQESLQITYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S         +  +   
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLAASGEDDIVFSTGSDYAANIELAEAVA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P+ N           D  +  ++  +VEQ+  P   T
Sbjct: 241 PAHNRAAPSQDMLLVDTPNAKTITELVEQFKVPVEKT 277



 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 115/188 (61%), Gaps = 3/188 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + AT +  DG++  + MG Y
Sbjct: 385 ADIRNVVEGDQSPDGRGSLLIKRGIEVGHIFQLGTKYSEALKATVQVEDGRNQVLTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H     ++  E IY +L   G
Sbjct: 445 GIGVTRVIAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVQEVAESIYQQLRAKG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E KHR  G +E + + +++N
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDNDDIEYKHRRKGEKEMIKVGDIVN 564

Query: 437 YASHRFSN 444
           + + + ++
Sbjct: 565 FLTVQITH 572


>gi|327392821|dbj|BAK10243.1| Prolyl-tRNA synthetase ProS [Pantoea ananatis AJ13355]
          Length = 572

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 132/277 (47%), Positives = 181/277 (65%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRVADRHERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS--KDFM---------- 228
           Y +IF+R+GL    ++A++G IGG  SHEF VLA +GE  V  S   DF           
Sbjct: 181 YSQIFNRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSTASDFAANIEFAEAVA 240

Query: 229 ---DFPIPSE---NTDFDDIISLNSIVEQWTAPYAAT 259
              D P P+E     D  +  ++  +V Q+  P   T
Sbjct: 241 PAGDRPAPAEEMREVDTPNTKTIAELVSQFQQPIEKT 277



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PMAQVADLRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +        ++  E++Y  
Sbjct: 440 TMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQKSFRVKELAEELYNT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G ++ +  
Sbjct: 500 LRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKARRAGEKQMIKQ 559

Query: 432 EEVINY 437
           +E++ +
Sbjct: 560 DEIVEF 565


>gi|92114261|ref|YP_574189.1| prolyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
 gi|114152183|sp|Q1QVL8|SYP_CHRSD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91797351|gb|ABE59490.1| prolyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 573

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DA+I SH+LMLR GMI + S G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASQLLISTLKETPADADIVSHQLMLRAGMIRRLSSGLYTWLPLGLRTLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P++Q A+LW ESGR+D YG  +LR+ DR+++   YGPTHEEV+TD+ R+
Sbjct: 61  MNRAGAQEVLMPSIQPAELWQESGRWDQYGNLLLRIRDRHERDFCYGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSFD+   G + SY+ M+ +
Sbjct: 121 EIRSYKQLPSNFYQIQTKFRDETRPRFGVMRAREFIMKDAYSFDIDQAGLQRSYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF VLAD+GE  V  S
Sbjct: 181 YMRIFTRLGLDFRAVEADNGDIGGSGSHEFQVLADSGEDAVIFS 224



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 103/166 (62%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K     ARGIEVGH+F  GTKYS  M+AT    +G+   + MG 
Sbjct: 385 VADLRNVVEGDPSPDGKGTLSIARGIEVGHVFQLGTKYSTAMNATVLDDNGQAVPLLMGC 444

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD  GIIWPD++APF+I+L+ + AH  +  R+  + +Y +LS  
Sbjct: 445 YGIGVTRVVAAAIEQNHDAGGIIWPDAIAPFEIALVPMNAHKSERVREYADTLYQQLSDA 504

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD   + G +FA  +L+G P +V++G + + + ++E K R
Sbjct: 505 GFDVLIDDRDLRPGVKFADQELIGIPHRVVIGDRGLDNDELEYKGR 550


>gi|218698853|ref|YP_002406482.1| prolyl-tRNA synthetase [Escherichia coli IAI39]
 gi|226701079|sp|B7NKX8|SYP_ECO7I RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218368839|emb|CAR16587.1| prolyl-tRNA synthetase [Escherichia coli IAI39]
          Length = 572

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLQIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|238784905|ref|ZP_04628905.1| Prolyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238714222|gb|EEQ06234.1| Prolyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 572

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S D
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTD 226



 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H     ++  E++Y  
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNYDNRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYVT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE KHR  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKHRRAGEKQMIKT 559

Query: 432 EEVINY 437
            E+I++
Sbjct: 560 SEIIDF 565


>gi|114563918|ref|YP_751432.1| prolyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122299171|sp|Q07ZH1|SYP_SHEFN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114335211|gb|ABI72593.1| prolyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 571

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/218 (55%), Positives = 162/218 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYTWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGAIE+ +P +Q ADLWVE+GR+D +G E+LR  DRN++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKTGAIEILMPLVQPADLWVETGRWDKFGPELLRFQDRNNRDFVLGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+Q KFRDE+RPRFGVMR+REFLMKDAYSF L  E   ++Y+ M  +
Sbjct: 121 ELSSYKQLPLTLYQVQTKFRDEVRPRFGVMRAREFLMKDAYSFHLDQETMDNTYHAMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  I  R+GL   P+ A++G IGG +SHEF VLA++GE
Sbjct: 181 YSNILTRMGLSFRPVLADTGSIGGSMSHEFHVLANSGE 218



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 3/189 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLATAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTSYSKSMNATVLDENGKAQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE ++D +GI WP+++APF + ++ +  H      D  EK+Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNNDDRGITWPEAIAPFTVGILPMNMHKSHRVADIAEKLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LADAGVEVLMDDRKERPGVMFADMELIGLPHVVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINYASH 440
           +E++ + ++
Sbjct: 559 DEIVAFLTN 567


>gi|270264794|ref|ZP_06193058.1| prolyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270041092|gb|EFA14192.1| prolyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 572

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVCMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 112/186 (60%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H      A  E++Y  
Sbjct: 440 TMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVQALAEELYNT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSEEIEYKNRRVGEKQMIKT 559

Query: 432 EEVINY 437
            E++++
Sbjct: 560 GEIVDF 565


>gi|262371768|ref|ZP_06065047.1| prolyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262311793|gb|EEY92878.1| prolyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 571

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+YSWLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYSWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGR++ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPAALWEESGRFEQYGPELLRFKDRHTNDFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAFSTE 226



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 104/185 (56%), Gaps = 3/185 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y+   D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK   
Sbjct: 382 AKYSEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGKPFT 441

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           V MG YGIG  RVVAA IE + D KGIIWP ++APF+++++ + AH      +A E +YA
Sbjct: 442 VTMGCYGIGVTRVVAAAIEQNFDDKGIIWPQAIAPFEVAIVPMNAHKSPRTLEAAEALYA 501

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      ++S
Sbjct: 502 ELQAQGYDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDEESTNLS 561

Query: 431 LEEVI 435
            EE+I
Sbjct: 562 KEELI 566


>gi|238751425|ref|ZP_04612917.1| Prolyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238710292|gb|EEQ02518.1| Prolyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 572

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 132/277 (47%), Positives = 177/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD--------FMDFPI 232
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S D        F +   
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTDSDYAANIEFAEALA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P+E            D  +  ++  +VEQ+  P   T
Sbjct: 241 PTEPRAVAGEELRIIDTPNAKTIAELVEQFNLPIEKT 277



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 112/186 (60%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQIADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNYDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRAGEKQMIKT 559

Query: 432 EEVINY 437
            E+I++
Sbjct: 560 SEIIDF 565


>gi|270157462|ref|ZP_06186119.1| prolyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164147|ref|YP_003454285.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella longbeachae NSW150]
 gi|269989487|gb|EEZ95741.1| prolyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288857320|emb|CBJ11147.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella longbeachae NSW150]
          Length = 569

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LM+RTGMI +   G+Y+W+PLG K L  +  I+REE
Sbjct: 1   MRASQWFLATLKETPNDAEIVSHQLMVRTGMIRKLGSGLYTWMPLGLKVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   ++E+ +P +Q A+LW E+GR+D++G ++L + D ND+   +GPTHEEV+TDI R 
Sbjct: 61  MNNINSMEVLMPAVQPAELWQETGRWDTFGGQLLTMKDSNDREYCFGPTHEEVITDIMRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP +FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPASFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLNLESLQDTYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +F S
Sbjct: 181 YCRIFDRLGLKYRAVEADTGAIGGSASHEFQVLADSGEDLIFYS 224



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N K  D  P+ K    S RGIEVGH+F  G KY+  M+A      G+   + MG YG
Sbjct: 382 DLRNVKDGDISPDGKGTLYSCRGIEVGHVFQLGDKYAKAMNAVVINEQGQLETMLMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGC 377
           +G  RVVAA IE  HD KGIIWP ++APF++ +I + AH     +   +++Y +   +  
Sbjct: 442 LGITRVVAAAIEQHHDEKGIIWPQNIAPFQLVIIPLNAHRSPEVKKQADRLYEQFKNLSI 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DV  DD  E+ G  FA  DL+G P +++V  + +  + VE K R TG  +  +L+  ++
Sbjct: 502 DVLIDDRNERAGVLFADHDLIGIPHRLVVSDRNIEQNCVEYKSRATGEMQQFNLDTAVD 560


>gi|123443459|ref|YP_001007432.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332160618|ref|YP_004297195.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|152112962|sp|A1JP53|SYP_YERE8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122090420|emb|CAL13288.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606904|emb|CBY28402.1| prolyl-tRNA synthetase; Bacterial type [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664848|gb|ADZ41492.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330860908|emb|CBX71188.1| prolyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 572

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+ L    + A++G IGG  SHEF VLAD+GE  +  S +
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLADSGEDDIVFSTE 226



 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H      A  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVQALAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRAGEKQMIKT 559

Query: 432 EEVINY 437
            E+I++
Sbjct: 560 SEIIDF 565


>gi|300938604|ref|ZP_07153336.1| prolyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|331645338|ref|ZP_08346449.1| proline--tRNA ligase [Escherichia coli M605]
 gi|281177420|dbj|BAI53750.1| prolyl-tRNA synthetase [Escherichia coli SE15]
 gi|300456450|gb|EFK19943.1| prolyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|330910045|gb|EGH38555.1| prolyl-tRNA synthetase [Escherichia coli AA86]
 gi|331046095|gb|EGI18214.1| proline--tRNA ligase [Escherichia coli M605]
          Length = 572

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 112/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 Y 437
           Y
Sbjct: 565 Y 565


>gi|187925415|ref|YP_001897057.1| prolyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|226699128|sp|B2SYU8|SYP_BURPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187716609|gb|ACD17833.1| prolyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 578

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/229 (56%), Positives = 169/229 (73%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEKYGPELLRFKDRRQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  + +C + DF
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPTSDF 229



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMGATCLDETGKPRPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +     +  R   +K+YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSEAVRAEADKLYAA 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L + G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R
Sbjct: 502 LVEAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKEGKLEYQGR 551


>gi|227122|prf||1614347A Pro-tRNA synthetase
          Length = 572

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+L++R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLIVRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGQASHEFQVLAQSGEDDVVFS 224



 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P  + + +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
            GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 TGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|293394735|ref|ZP_06639027.1| proline-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291422861|gb|EFE96098.1| proline-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 572

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKD+YSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDSYSFHTTQESLQATYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMGLDFRPVQADTGSIGGSASHEFQVLAASGEDDIVFS 224



 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 3/190 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           Q   P    +D+ N    D+ P+ +   +  RGIEVGHIF  GTKYS  M AT +G DG+
Sbjct: 376 QRDLPLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGR 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEK 367
           +  + MG YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  EK
Sbjct: 436 NQLLNMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFHVAILPMNMHKSFRVQELAEK 495

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++
Sbjct: 496 LYAELRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSDEIEYKNRRVGEKQ 555

Query: 428 DMSLEEVINY 437
            +   +++ Y
Sbjct: 556 MIKTGDIVEY 565


>gi|328861737|gb|EGG10840.1| hypothetical protein MELLADRAFT_42095 [Melampsora larici-populina
           98AG31]
          Length = 486

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 249/439 (56%), Gaps = 41/439 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIAS--HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ ++Y   I  +   D  I+S  H L+LR G + Q S GI+++LP   + L  V  I+R
Sbjct: 31  LQSNRYSPTIKTQAQSDTSISSPGHHLLLRAGFLRQSSTGIWNFLPNAIRVLKKVEDIVR 90

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  R GA E+S+  LQ++ LW  SGR+++ GKE+ RL+DR D  ++  PTHEE +T + 
Sbjct: 91  EEMERIGASEVSLSHLQTSSLWKASGRWNTAGKELFRLSDRKDAHLLLAPTHEEEITQLV 150

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  + S + LP   + I  K+RDELRPR G++RSREF+MKD Y+FDL    +  +Y+ + 
Sbjct: 151 KLDVNSSKQLPVRLFHIGRKYRDELRPRAGLLRSREFIMKDLYTFDLDRTKALETYSAVQ 210

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENT 237
            +Y +I  R+G+  +   A+SG IGG  SHE+   + +GE T + C+K            
Sbjct: 211 GAYEKILKRIGIPFVVAEADSGAIGGSQSHEYQFESPSGEDTVIKCTK------------ 258

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D I+   + +    P    SDV+  +    L      S++ IEV H FY GTKYS  
Sbjct: 259 --CDYIANVELAKSVLVP--PLSDVNALRCRSPLG-----SSKAIEVAHTFYLGTKYSSS 309

Query: 298 MSATFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +SAT+K +D      K++ ++MG +GIG  R++ A+ E SH   G+ WP +VAPFK+ +I
Sbjct: 310 LSATYKISDPKTGLQKENPLEMGCFGIGISRLMGAIAECSHTETGLRWPINVAPFKVCII 369

Query: 353 N------------IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                        IK+  Q+     E I  ++ ++  +V  DD  ++IG +   ADL+G+
Sbjct: 370 IPMQENDAGSSDLIKSVAQIIGREVESIKTKVGELKGEVLIDDRIQRIGWKLMDADLVGY 429

Query: 401 PLQVIVGSKFVSDSKVEIK 419
           P+ +++G++++ +  +EI+
Sbjct: 430 PILIVLGNRWIKNQVIEIR 448


>gi|48783|emb|CAA39134.1| ProRS [Escherichia coli]
 gi|147362|gb|AAA24420.1| prolyl-tRNA synthetase [Escherichia coli]
          Length = 572

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+L++R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLIVRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGQASHEFQVLAQSGEDDVVFS 224



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P  + + +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NY 437
            Y
Sbjct: 564 EY 565


>gi|322831614|ref|YP_004211641.1| prolyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321166815|gb|ADW72514.1| prolyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 572

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/230 (54%), Positives = 164/230 (71%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y +IF+R+GL    + A++G IGG  SHEF VLA +GE  V  S D  DF
Sbjct: 181 YSQIFNRMGLDFRAVLADTGSIGGSASHEFQVLAQSGEDDVVFS-DSSDF 229



 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 114/187 (60%), Gaps = 3/187 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A     +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  M+AT +G DG++  
Sbjct: 379 AALPEVADIRNVVAGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAMNATVQGEDGRNQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +DA E +Y 
Sbjct: 439 MTMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKDAAEALYK 498

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G DV  DD  E+ G  FA  +L+G P QV++G + +   ++E K+R TG ++ + 
Sbjct: 499 ELRSHGIDVILDDRKERPGVMFADMELIGVPHQVVIGDRNLDAEELEYKNRRTGEKQMIK 558

Query: 431 LEEVINY 437
             +++ Y
Sbjct: 559 QSDIVEY 565


>gi|238787209|ref|ZP_04631008.1| Prolyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238724471|gb|EEQ16112.1| Prolyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 572

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 132/277 (47%), Positives = 177/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S         +F +   
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTGSDYAANIEFAEAMA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           PSE            D  +  ++  +VEQ+  P   T
Sbjct: 241 PSEPRAAAAEELRIIDTPNAKTIADLVEQFQMPIEKT 277



 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  G+KYS  M AT +G DG++  +
Sbjct: 380 PLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRAGEKQMIKT 559

Query: 432 EEVINY 437
            E+I +
Sbjct: 560 NEIIEF 565


>gi|238763953|ref|ZP_04624909.1| Prolyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238697770|gb|EEP90531.1| Prolyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 572

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M AT +G DG++  + MG YGIG  RVVAA IE +HD +GII
Sbjct: 407 RGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H     ++  E++Y  L   G DV  DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRAHGIDVILDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  V++G + +   +VE K+R  G +  +   E+I++
Sbjct: 527 GVPHNVVIGDRNLDSEEVEYKNRRAGEKHMIKTSEIIDF 565


>gi|94986834|ref|YP_594767.1| prolyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|114152206|sp|Q1MRD0|SYP_LAWIP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94731083|emb|CAJ54446.1| Prolyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 575

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 165/226 (73%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+WLPLG K L+   +IIR E
Sbjct: 1   MRWSQCYIPTLKEAPGDAELLSHKLLIRAGMIRKLTSGIYTWLPLGLKTLNKAISIIRSE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR+D YGKE+LR+ DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRIGAEEILMPMVQPADLWKESGRWDQYGKELLRIKDRHDREYCLGPTHEEVVTHLLRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR+REFLMKDAYSFD   EG+  SY+ MF +
Sbjct: 121 EVRSYRQLPINVYQIQTKFRDEIRPRFGLMRAREFLMKDAYSFDQDNEGADISYHTMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y  IF  + L    + A+SG IGG+ SHEF+V+AD+GE T  FC K
Sbjct: 181 YKAIFTCMALDFRAVEADSGSIGGNFSHEFMVIADSGEDTIAFCRK 226



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P   R  A  +GIEVGH+F  GTKYS  M+A F   +G++  + MG YGIG  RV+A
Sbjct: 390 DGCPSCGREIALTKGIEVGHVFKLGTKYSKSMNAFFLDENGEEQLMVMGCYGIGVSRVIA 449

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE ++D  GII+P  +APF+I LIN+   D+       +IY      G +VF DD  E
Sbjct: 450 ACIEQNNDKYGIIFPPPLAPFEIMLINLDPRDESVVMKASEIYQFFLSEGIEVFLDDREE 509

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G +F  ADLLGFP+QVI+G+K +++  +E+K+R TG +   SLE
Sbjct: 510 RPGIKFNDADLLGFPIQVIIGAKSLANGIIEVKNRKTGEKSSFSLE 555


>gi|284008500|emb|CBA75007.1| prolyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 571

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHKLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGAIEISMPIVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    +  + +Y+ M+ +
Sbjct: 121 EVTSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTDQDSLQQTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+G     ++A++G IGG+ SHEF VLAD+GE  +  S
Sbjct: 181 YSAIFTRIGFNFRAVQADTGSIGGNASHEFQVLADSGEDNIVFS 224



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M A+ +  DG +  V MG YGIG  R+VAA IE SHD KGII
Sbjct: 407 RGIEVGHIFQLGTKYSEAMKASVQNEDGHNQTVTMGCYGIGVTRIVAAAIEQSHDDKGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H     ++  E++Y  L   G DV  DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVAILPMNMHKSYRVKEVAERLYRDLQAKGIDVLLDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + + +++VE K R    +E +++  ++++
Sbjct: 527 GIPHTIVIGDRNLDNNQVEYKQRRNNEKEYINIAGIVDF 565


>gi|332704074|ref|ZP_08424162.1| Prolyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554223|gb|EGJ51267.1| Prolyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
          Length = 576

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 165/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++LP L+E P DAE+ SHKL+LR G+I Q + GIY++LP+G +AL+ V  I+R+E
Sbjct: 1   MRLSRFYLPTLKEVPADAEVVSHKLLLRAGLIRQLTSGIYTYLPMGLRALNKVADIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW E+GR++ YGKE+LR  DR D     GPTHEEV+T++ R 
Sbjct: 61  MDRAGAQEILMPMVQPAELWKETGRWEFYGKELLRFKDRKDSDYCLGPTHEEVVTNLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   EG+  SY  M+ +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDEEGANKSYWSMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF RLGLK   + A+SG IGG  SHEF+VLA TGE  +   ++
Sbjct: 181 YAQIFRRLGLKFKAVEADSGAIGGSFSHEFMVLAATGEDTIATCQE 226



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 101/155 (65%), Gaps = 2/155 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G KYS  M ATF   +GKD  + MG YGIG  R++A+ IE +HD  GII
Sbjct: 402 RGIEVGHVFKLGYKYSKAMHATFLDENGKDQTMVMGCYGIGVSRIIASAIEQNHDDGGII 461

Query: 340 WPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +P S+AP++ +LI++ K+ D V   A E +Y  L   G +V +DD  E+ G +F  ADL+
Sbjct: 462 FPPSIAPYEAALISLGKSGDAVNAKAAE-LYESLRAEGIEVLFDDREERPGVKFKDADLV 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G+P+Q+++G K +    VE K R TG + ++ LE+
Sbjct: 521 GYPMQIVLGGKGLERGVVEAKDRRTGEKAELPLED 555


>gi|238796636|ref|ZP_04640143.1| Prolyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238719614|gb|EEQ11423.1| Prolyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 572

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 131/277 (47%), Positives = 177/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S         +F +   
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTGSDYAANIEFAEALA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P+E            D  +  ++  +VEQ+  P   T
Sbjct: 241 PTEPRGTATEELRIVDTPNAKTIAELVEQFKLPIEKT 277



 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADLRNVVEGDISPDGQGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNYDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE KHR  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKHRRAGEKQMIKT 559

Query: 432 EEVINY 437
            E+I +
Sbjct: 560 SEIIEF 565


>gi|291613215|ref|YP_003523372.1| prolyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291583327|gb|ADE10985.1| prolyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 566

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 129/264 (48%), Positives = 179/264 (67%), Gaps = 12/264 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SH+LMLR G I + S G+Y+W+PLG + L  V A++REE
Sbjct: 1   MRVSQFFISTLKEAPSEAELPSHRLMLRAGYIRKLSSGLYTWMPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G IE+ +P +Q A+LW E+GR+D +G +ML++ DR+D    +GPTHEEV+TDI R 
Sbjct: 61  MNKSGGIELLMPAVQPAELWQETGRWDVFGPQMLKIKDRHDNLFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYRQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHSSFESLEQTYRVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  + FC            N+D+
Sbjct: 181 YTRIFTRLGLQFRAVAADTGAIGGSGSHEFHVLADSGEDALAFCP-----------NSDY 229

Query: 240 DDIISLNSIVEQWTAPYAATSDVH 263
              + L   V   TA   A+ ++ 
Sbjct: 230 AANVELAEAVAPATARAPASQELQ 253



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 107/186 (57%), Gaps = 5/186 (2%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D+ P+ K      RGIEVGHIF   TKYS  + AT+   +GK   ++MG YG
Sbjct: 382 DLRNVVAGDASPDGKGALELCRGIEVGHIFQLRTKYSEALQATYLDENGKAQVMEMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVG 376
           IG  R+VAA IE + D +GI  P  +APF++++  I IK  + V R+A E++YA L+  G
Sbjct: 442 IGVSRIVAAAIEQNFDERGIALPSGMAPFQVAIAPIGIKKSEAV-RNAAEQLYAELTAAG 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P ++++G + + + KVE + R     + + L++ + 
Sbjct: 501 VEVLLDDRDERPGVMFADLELIGVPHRIVIGDRGLKEGKVEYQGRKDETAQSIPLQDAVK 560

Query: 437 YASHRF 442
               + 
Sbjct: 561 LVQSKL 566


>gi|119774298|ref|YP_927038.1| prolyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|152016599|sp|A1S4R2|SYP_SHEAM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119766798|gb|ABL99368.1| prolyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 572

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/243 (51%), Positives = 168/243 (69%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q  DLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPGDLWVETGRWDQFGPELLRFTDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF LT E    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLTQETLDETYQAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  IF R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNIFSRMGLAFRPVLADTGSIGGSVSHEFHVLAQSGEDLIAYSTGSDYAANIEKAEAPL 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 110/193 (56%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    ++ P+ K   A  RGIEVGHIF  G KYS  M+AT    +GK   +
Sbjct: 379 PLVQGADIRNVVEGEATPDGKGTYAFARGIEVGHIFQLGNKYSEAMNATVLDENGKSQIM 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE ++D +GI+WP+++APF + ++ +  H      D  E +Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNNDERGIVWPEAIAPFTVGILPMNMHKSHRVTDTAEALYKE 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L++ G +V +DD  E+ G  FA  +LLG P  V++G + +     E K+R TG + ++  
Sbjct: 499 LTEAGFEVLFDDRKERPGVMFADMELLGIPHTVVIGDRNIDTGVYEYKNRRTGEKTEVPF 558

Query: 432 EEVINYASHRFSN 444
            E++++   +F  
Sbjct: 559 AELVSFLKAQFQQ 571


>gi|167721308|ref|ZP_02404544.1| prolyl-tRNA synthetase [Burkholderia pseudomallei DM98]
          Length = 568

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/219 (57%), Positives = 165/219 (75%), Gaps = 2/219 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR+ DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRIKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           +  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 219



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 372 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 432 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 490

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 491 NLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 541


>gi|332289599|ref|YP_004420451.1| prolyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330432495|gb|AEC17554.1| prolyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 568

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPTDAEVVSHQLMLRAGMIRKLAAGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q ADLW ES R++ YG E+LR  DR D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVVMPVVQPADLWQESQRWEQYGPELLRFTDRGDRPFVLGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKD YSF L  E  + +Y+ M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDGYSFHLDKESLQQTYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL   P++A++G IGG  SHEF VLAD+GE  +  S +
Sbjct: 181 YCNIFNRLGLDFRPVQADNGSIGGSGSHEFQVLADSGEDDIVFSTE 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P  K   +  RGIEVGHIF  G KYS  M AT +G DGK   +
Sbjct: 377 PTPQIADIRNVVEGDPSPCGKGTLLIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPQTM 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC-RDACEKIYAR 371
            MG YGIG  RVVAA IE SHD +GIIW D++APF+++++ +  H     +   E++Y  
Sbjct: 437 MMGCYGIGITRVVAAAIEQSHDERGIIWSDALAPFQVAIVPMNMHKSAAVQQYAEELYQT 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V +DD  E+ G  FA  +L+G P  +I+G K +   ++E K R +G ++ +  
Sbjct: 497 LLAQGIEVLFDDRKERPGVMFADMELIGIPHMIIIGEKNLEKGEIEYKSRRSGEKQMVDK 556

Query: 432 EEVINYASHRF 442
           ++++ + + + 
Sbjct: 557 QQLVKFITEKL 567


>gi|197286110|ref|YP_002151982.1| prolyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227357229|ref|ZP_03841586.1| prolyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|226701319|sp|B4F249|SYP_PROMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194683597|emb|CAR44486.1| prolyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227162492|gb|EEI47481.1| prolyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 571

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 137/303 (45%), Positives = 189/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y W+P G + L  +  I+REE
Sbjct: 1   MRTSHYLLSTLKETPADAEIVSHQLMLRAGMIRKLASGLYDWMPTGVRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TDI R+
Sbjct: 61  MDNAGSLEISMPVVQPADLWQESGRWEQYGPELLRFTDRGERPFVLGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y++M+ +
Sbjct: 121 EITSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHISQESLQETYDRMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S            +D+ 
Sbjct: 181 YSNIFTRIGLDFRPVLADTGSIGGSASHEFQVLADSGEDDIVFST----------ASDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   V   T    AT ++   +L D+   N +  A  +E         +++LP+  
Sbjct: 231 ANIELAEAVMPATPRSPATEEL---RLVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +  +G +  V
Sbjct: 380 PLAEMADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQNEEGHNQVV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H     ++  EK+YA 
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDARGIIWPDAIAPFQVAILPMNMHRSYRVKEVAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + + + +VE K R +  +  +++
Sbjct: 500 LRAQGIDVLFDDRKERPGVMFADMELIGVPHTIVIGDRNLDNEQVEYKARRSDDKSLVNV 559

Query: 432 EEVINYASHRF 442
            +V+ +   + 
Sbjct: 560 NDVVAFIKEQL 570


>gi|218513336|ref|ZP_03510176.1| prolyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 215

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 121/211 (57%), Positives = 161/211 (76%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           DF+DF IP E+TDFD +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIE G
Sbjct: 1   DFVDFDIPGESTDFDSVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEAG 60

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           HIFYFGTKYS PM A  +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVA
Sbjct: 61  HIFYFGTKYSEPMGAKVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVA 120

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           PF + +IN+KA DQ C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I
Sbjct: 121 PFDVVVINMKAGDQACDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQII 180

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            G + V++ +VE+K R TG RE M++E  IN
Sbjct: 181 AGPRAVANGEVEVKDRKTGARETMTIEAAIN 211


>gi|189424968|ref|YP_001952145.1| prolyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|226701293|sp|B3E1X5|SYP_GEOLS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189421227|gb|ACD95625.1| prolyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 576

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 119/221 (53%), Positives = 162/221 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++F+P L+E P DAE+ SH+LM+R+GMI + + GIY+++PLG +++     I+REE
Sbjct: 1   MRYTQFFIPTLKETPSDAEVVSHQLMMRSGMIRKIAAGIYTYMPLGLRSIRKFEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW+ES R+  YGKE+LR  DR D     GPTHEE++TDI R 
Sbjct: 61  MNRAGAIELLMPGVQPAELWIESKRWAQYGKELLRFKDRKDNEFCMGPTHEEIITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR +P  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    +  SY+KM+ +
Sbjct: 121 EVKSYRQMPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDVDSSAADLSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GL    + A++G IGG  SHEF+VLA +GE  +
Sbjct: 181 YNRIFERCGLNFRAVEADTGSIGGSASHEFMVLASSGEDAI 221



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 136/278 (48%), Gaps = 43/278 (15%)

Query: 182 LRIFHRLGLKSIPMRAES-------------GPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           L++ +RLG   I M  +              GP+G  L  E  V+AD      +  +   
Sbjct: 303 LKLKNRLGWDEIQMATDDEILRFTGSPPGFLGPLG--LKAELQVVAD------YAVETMA 354

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAA----TSDVHNEKLFDSLPENKRVSA----- 279
           DF I +  TD           + +T          S + + +L  +     R S      
Sbjct: 355 DFVIGANETD-----------QHYTGANTGRDFQISQIADIRLIGAGDPCPRCSGGTLEV 403

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGH+F  GTKYS  M+AT+   DGK+  + MG YGIG  R VAA IE +HD  G+
Sbjct: 404 WRGIEVGHVFKLGTKYSSSMNATYLDKDGKEQIIFMGCYGIGIGRTVAASIEQNHDENGV 463

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP  +APF  S++ I A  D+    A + I+ RL   G +V  DD  E+ G +F   DL
Sbjct: 464 IWPLPLAPFHCSVVAINAQKDEAVMAAAQDIHDRLEAAGVEVLLDDRDERPGVKFKDHDL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G PL+++VG K +++  VE K R  G  + ++ E+ I
Sbjct: 524 IGIPLRIVVGGKNLAEGNVEFKQRAGGEMQLLAPEQAI 561


>gi|308185763|ref|YP_003929894.1| Prolyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308056273|gb|ADO08445.1| Prolyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 572

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAVEILMPVVQPADLWQESGRWEEYGPELLRIADRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D
Sbjct: 181 YSQIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSTD 226



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 114/186 (61%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A+ +D+ N    D  P+ K      RGIEVGHIF  GTKYS  + A+ +G DG++  +
Sbjct: 380 PLASVADIRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSDALKASVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +        ++  E++YA 
Sbjct: 440 SMGCYGIGITRVVAAAIEQNHDDRGIIWPDALAPFEVAILPMNMQKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G ++ +  
Sbjct: 500 LRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKSRRAGEKQMIKQ 559

Query: 432 EEVINY 437
           +E++++
Sbjct: 560 DEIVDF 565


>gi|254785039|ref|YP_003072467.1| proline--tRNA ligase [Teredinibacter turnerae T7901]
 gi|259511626|sp|C5BPN9|SYP_TERTT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|237684457|gb|ACR11721.1| proline--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 574

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAE+ SHKLMLR G+I + + G+Y+WLPLG + L  V  I+R+E
Sbjct: 1   MRASQYLIATQKETPADAEVISHKLMLRAGLIRKMASGLYNWLPLGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A++W ESGR+  YG E+LR+ DR+D+A   GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPVVQPAEIWQESGRWQQYGPELLRINDRHDRAFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF ++ E  + +Y+ M  +
Sbjct: 121 EVKSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHISQESLQETYDVMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL+  P+ A++G IGG  SHEF VLAD+GE  +  S D
Sbjct: 181 YCNIFDRIGLQYRPVLADTGSIGGSASHEFHVLADSGEDDIAFSSD 226



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 100/172 (58%), Gaps = 4/172 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y+   D+ N  + D  P  K      RGIEVGHIF  GTKYS  M AT    +GKD  
Sbjct: 380 ASYSRVEDLRNVVVGDPSPCGKGTIEIKRGIEVGHIFQLGTKYSAAMKATVLDENGKDVT 439

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYA 370
           + MG YGIG  R+VA+ IE +HD  GIIWPD++APF+++++ I  H     ++ACE +Y 
Sbjct: 440 MTMGCYGIGVSRIVASAIEQNHDDNGIIWPDAIAPFQLAIVPINMHKSDAVKEACETLYD 499

Query: 371 RLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +    G DV   D+   ++G+  A  +L+G P +V++G + +    +E K R
Sbjct: 500 QCQTAGIDVLLMDEPKARLGAMLADVELVGIPHRVVIGDRGLEQGNIEYKGR 551


>gi|82701584|ref|YP_411150.1| prolyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|114152221|sp|Q2YBW3|SYP_NITMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|82409649|gb|ABB73758.1| prolyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 569

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 125/225 (55%), Positives = 165/225 (73%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+  L+E P +AE+ SHKLMLR G+I +   G+Y+W+PLG K L  V  I+REE
Sbjct: 1   MRASGFFISTLKEAPAEAELISHKLMLRAGIIRRLGSGLYTWMPLGLKVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MDAAGALELLMPAVQPAELWRETGRWDVFGPQMLKIRDRHERDFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M V+
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDIPSLEETYQAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y RIF RLGLK  P++A++G IGG  SHEF VLAD+GE  + FCS
Sbjct: 181 YCRIFDRLGLKFRPVKADTGAIGGSSSHEFHVLADSGEDAIAFCS 225



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 3/169 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGHIF   TKYS  M A +    G+   ++MG YGIG  R+VAA IE +HD +GI
Sbjct: 402 CRGIEVGHIFQLLTKYSEAMKANYLDESGQARPMEMGCYGIGVSRIVAAAIEQNHDERGI 461

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I+P ++APF++ +I I  K + +V R   EK+YA LS VG +V  DD  ++ G  FA  +
Sbjct: 462 IFPAAMAPFQVVIIPIGLKKNAEV-RAEAEKLYATLSSVGIEVLLDDRDDRPGVMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           L+G P +V+VG + + +   E + R     E + L E+ ++   + +  
Sbjct: 521 LIGIPHRVVVGERGLKEGNAEYRGRRDEKSEVVPLPEIADFIKSKLAGG 569


>gi|257094575|ref|YP_003168216.1| prolyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047099|gb|ACV36287.1| prolyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 574

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LMLR GMI + + GIY+W+P+G + +  V  I+REE
Sbjct: 1   MRTSRFFLSTLKEAPSDAEIISHQLMLRAGMIKRLAGGIYTWMPIGLRVMRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAIELSMPAVQPAELWQESGRWEKYGPELLRCKDRHQRDFVIGPTHEEVITDVVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQ+Q+KFRDE+RPRFGVMR REFLMKD YSF    E  +  Y  MF +
Sbjct: 121 EVKSYRQLPLHFYQVQVKFRDEIRPRFGVMRGREFLMKDGYSFHSGFEDLQREYRNMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  + +C
Sbjct: 181 YTRIFTRLGLQFRAVAADTGAIGGTGSHEFHVLADSGEDALAYC 224



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+ +      RGIEVGHIF   T+Y+  +  TF    G+   ++M
Sbjct: 383 AVVADLRNVVAGDPSPDGRGTLELCRGIEVGHIFQLRTRYAEALKCTFLDESGQSRVMEM 442

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           G YGIG  R+V A IE  HD +GI++P ++APF++ ++ +  A  Q  RDA + +Y  L 
Sbjct: 443 GCYGIGVTRIVGAAIEQGHDERGIVFPAAIAPFEVCIVPMGYAKSQAVRDAADALYGELM 502

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + G DV  DD  E+ G  FA  +L+G P +V+VG + ++  K+E K R+
Sbjct: 503 REGIDVLLDDRNERPGVMFAEMELIGVPHRVVVGERGLAQGKLEYKGRV 551


>gi|167740276|ref|ZP_02413050.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 14]
          Length = 568

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/219 (57%), Positives = 164/219 (74%), Gaps = 2/219 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           +  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 219



 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 372 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+W +++APF++ L  +  +D+    R+A +K+YA
Sbjct: 432 VMGCYGIGITRILGAAIEQNFDDKGIVWAEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 490

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 491 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 541


>gi|167817496|ref|ZP_02449176.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167847384|ref|ZP_02472892.1| prolyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167904356|ref|ZP_02491561.1| prolyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167912616|ref|ZP_02499707.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 112]
          Length = 568

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 127/219 (57%), Positives = 164/219 (74%), Gaps = 2/219 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           +  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 219



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 372 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 432 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 490

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 491 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGR 541


>gi|307544897|ref|YP_003897376.1| prolyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307216921|emb|CBV42191.1| prolyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 573

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DA+I SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASQLLIATLKETPADADIVSHQLMLRAGMIRRLNAGLYTWLPLGLRTLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR+D YG  +LR+ DR+D+   YGPTHEEV+TD+ R+
Sbjct: 61  MNRAGAQEVLMPAIQPAELWQESGRWDQYGNLLLRIRDRHDRDFCYGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSFD+   G + SY+ M+ +
Sbjct: 121 ELRSYKQVPSNFYQIQTKFRDETRPRFGVMRAREFIMKDAYSFDVDQAGLQRSYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF VLAD+GE  V  S
Sbjct: 181 YVRIFTRLGLDFRAVEADNGDIGGSGSHEFQVLADSGEDAVVFS 224



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 1/166 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GTKYS  M+AT    +G+   + MG YGIG  RVVAA IE +HD  GI
Sbjct: 407 ARGIEVGHVFQLGTKYSTAMNATVLDDNGQAVPLLMGCYGIGVTRVVAAAIEQNHDDAGI 466

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWPD++APF ++L+ + AH  Q  RD  E++Y  LS  G DV  DD   + G +FA  +L
Sbjct: 467 IWPDAIAPFNVALVPMNAHKSQRVRDESERLYQALSDAGLDVLLDDRDLRPGVRFADQEL 526

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P ++++G + +   ++E K R       + +++VI +   +  
Sbjct: 527 MGIPHRIVIGDRSLDKGELEYKGRRDSEATMIPIDDVIAFLREKIG 572


>gi|258405882|ref|YP_003198624.1| prolyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257798109|gb|ACV69046.1| prolyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 579

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 121/221 (54%), Positives = 161/221 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P +AE+ SHKL++R GMI + + GIY++LPLG +ALD +  ++REE
Sbjct: 1   MRLSNAYIPTLKEEPAEAEVVSHKLLVRAGMIRKVTSGIYTFLPLGLRALDKIAHVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G  E+ +P +Q  DLW E+GR++ YGKE+LRL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRAGCQEIFMPMVQPGDLWKETGRWEYYGKELLRLKDRHDRDYCLGPTHEEVVTSLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRCREFIMKDAYSFDRDEAGAQKSYQTMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y R F RLGL+   + A+SG IGG +SHEF+VLA TGE  +
Sbjct: 181 YTRAFQRLGLQFRAVEADSGAIGGSVSHEFMVLAATGEDTI 221



 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  GTKYS PM A +   +GK+  + MG YGIG  R++AA IE +HD  GI+
Sbjct: 404 QGIEVGHVFNLGTKYSAPMQALYLDENGKEREMVMGCYGIGVSRILAAAIEQNHDASGIM 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P S+AP++I+L+ +   ++  R   E  Y  L + G DV +DD  E+ G +F  ADL+G
Sbjct: 464 FPPSIAPYEIALLCLDTKNEEVRTKAEAFYETLQEQGVDVLYDDRVERPGFKFKDADLMG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN-YASHR 441
            PLQV+ G K V+   VE+K R TG + ++ L+ +   +AS R
Sbjct: 524 LPLQVVFGGKGVARGIVEVKDRRTGEKAELPLDGLAEAFASWR 566


>gi|167895971|ref|ZP_02483373.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 7894]
          Length = 568

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 127/219 (57%), Positives = 164/219 (74%), Gaps = 2/219 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           +  P+ A++G IGG  SHEF V+ADTGE  + +C + DF
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDF 219



 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 372 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +  +D+    R+A +K+YA
Sbjct: 432 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPM-GYDRSDAVREAADKLYA 490

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R
Sbjct: 491 DLAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYRGR 541


>gi|161723258|ref|YP_094730.2| prolyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|114152207|sp|Q5ZXN7|SYP_LEGPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 569

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 168/224 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYS 224



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y    D+ N K  D  P+ K      RGIEVGH+F  G KY+  M+A+     G+   
Sbjct: 376 AKYDDAYDLRNVKEGDPSPDGKGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQLQT 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E +Y 
Sbjct: 436 MIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAESLYQ 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    VE K R++   + ++
Sbjct: 496 QLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCVEYKARISSETQLIN 555

Query: 431 LEEVINY 437
           L++V+N+
Sbjct: 556 LDKVVNF 562


>gi|327481520|gb|AEA84830.1| prolyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 571

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 133/278 (47%), Positives = 182/278 (65%), Gaps = 20/278 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+W+P+G +AL    AI+REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWMPMGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNKAGALEVLMPAIQPAELWQESGRWEQYGPELLRLKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF L+ E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLSQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF--------PI 232
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S D  D+         I
Sbjct: 181 YCNIFTRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAFS-DSSDYAANIEKAEAI 239

Query: 233 PSEN-----------TDFDDIISLNSIVEQWTAPYAAT 259
           P E             D  D  ++  +VEQ+  P   T
Sbjct: 240 PRETERAAPGEELRLIDTPDAKTIAELVEQFGLPVERT 277



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M+    G +GK   +
Sbjct: 378 PLPQVADLRNVVAGDPSPDGKGSLVIKRGIEVGHIFQLGTKYSEAMNCQVMGENGKPATL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE ++D +GI+WPD++APF+I+L+ +K   +  R+A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNYDERGILWPDALAPFQIALVPMKYETEAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +E KHR     + ++
Sbjct: 498 TAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSDRGLADGMLEYKHRRDAQPQPVA 557

Query: 431 LEEVINYASHR 441
             E++++ + R
Sbjct: 558 ASEILSFINSR 568


>gi|307609489|emb|CBW98986.1| prolyl-tRNA synthetase [Legionella pneumophila 130b]
          Length = 569

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 168/224 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSTSHEFQVLAESGEDLIFYS 224



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 106/187 (56%), Gaps = 3/187 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G+   
Sbjct: 376 AKYDDAYDLRNVKEGDPSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQLQT 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E +Y 
Sbjct: 436 MIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAESLYQ 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   + ++
Sbjct: 496 QLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQLIN 555

Query: 431 LEEVINY 437
           L++V+N+
Sbjct: 556 LDKVVNF 562


>gi|127513524|ref|YP_001094721.1| prolyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166980157|sp|A3QG64|SYP_SHELP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126638819|gb|ABO24462.1| prolyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 569

 Score =  268 bits (686), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 126/243 (51%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNNAGAVEILMPMVQPADLWVETGRWDKFGPELLRFQDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDDTYQAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA++GE  +  S +          + P+
Sbjct: 181 YSNILGRMGLAFRPVLADTGSIGGSMSHEFHVLANSGEDLIAYSTESDYAANIEKAEAPM 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P  K      RGIEVGHIF  GT YS  M A+    +GK   +
Sbjct: 379 PQAEVADLRNVIEGEPSPCGKGTIGLLRGIEVGHIFQLGTNYSKAMGASVLDENGKAQTL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE +HD +GIIWP ++APFK+ ++ +  H     +D  EK+Y+ 
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNHDDRGIIWPAAIAPFKVGILPMNMHKSHRIKDMAEKLYSD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G +V +DD  E+ G  FA  +L+G P  +++G + + +   E K+R TG ++++  
Sbjct: 499 LSDAGIEVLFDDRKERPGVMFADMELIGLPHVIVIGERNIDNGVFEYKNRRTGEKQEIPF 558

Query: 432 EEVINY 437
           EE++++
Sbjct: 559 EEIVDF 564


>gi|303326973|ref|ZP_07357415.1| proline--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302862961|gb|EFL85893.1| proline--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 580

 Score =  268 bits (686), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 164/224 (73%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P DAE+ SHKL+LR GM+ + + G+Y +LPLG K +D +  ++REE
Sbjct: 1   MRFSSCYIPTLKESPADAEVVSHKLLLRAGMVRRLTSGLYIYLPLGLKIIDKIARVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +G  E+ +P +Q ADLW E+GR++ YGKE+LR  DRN++    GPTHEEV+TD+ R 
Sbjct: 61  INASGFQELLMPMVQPADLWKETGRWEHYGKELLRFKDRNERDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD    G++ SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQIQSKFRDEIRPRFGLMRGREFMMKDGYSFDADIAGAEESYKLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RIF RLGLK   + A++G IGG+ SHEF+VLADTGE T  FC
Sbjct: 181 YTRIFKRLGLKFRAVEADTGSIGGNFSHEFMVLADTGEDTIAFC 224



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 93/151 (61%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M A F   +GK+  + MG YGIG  RV AA IE +HD  GI+
Sbjct: 406 KGIEVGHIFMLGLKYSESMHAAFLDENGKEKLMIMGCYGIGVSRVAAAAIEQNHDENGIV 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  VAPF+  L+N+   +       E+IYA L  +G DV  DD  E+ G +F  ADLLG
Sbjct: 466 FPPPVAPFECILLNLDPRNAEVTAKAEEIYAMLRDMGVDVLLDDREERPGVKFKDADLLG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            P+Q++VG K ++   VE K R +G + ++S
Sbjct: 526 APMQLVVGGKGLARGIVECKDRRSGEKGELS 556


>gi|54296718|ref|YP_123087.1| prolyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|81822631|sp|Q5X756|SYP_LEGPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53750503|emb|CAH11897.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella pneumophila str. Paris]
          Length = 569

 Score =  268 bits (686), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 168/224 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYS 224



 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 106/187 (56%), Gaps = 3/187 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G+   
Sbjct: 376 AKYDDAYDLRNVKEGDQSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQLQT 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E +Y 
Sbjct: 436 MIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQTVKEQAESLYQ 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   + ++
Sbjct: 496 QLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQLIN 555

Query: 431 LEEVINY 437
           L++V+N+
Sbjct: 556 LDKVVNF 562


>gi|54293678|ref|YP_126093.1| prolyl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|81822437|sp|Q5WYK5|SYP_LEGPL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53753510|emb|CAH14965.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella pneumophila str. Lens]
          Length = 569

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 168/224 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYS 224



 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 3/187 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G+   
Sbjct: 376 AKYDDAYDLRNVKEGDPSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQLQT 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A     ++  E +Y 
Sbjct: 436 MIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSHAVKEQAESLYQ 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   + ++
Sbjct: 496 QLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQLIN 555

Query: 431 LEEVINY 437
           L++V+N+
Sbjct: 556 LDKVVNF 562


>gi|51597293|ref|YP_071484.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|186896398|ref|YP_001873510.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|81825738|sp|Q667L4|SYP_YERPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701360|sp|B2JZ09|SYP_YERPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51590575|emb|CAH22216.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|186699424|gb|ACC90053.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 572

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/277 (47%), Positives = 176/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDELRPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDELRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S         +F +   
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTGSDYAANIEFAEALA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P+E            D  +  ++  +VEQ+  P   T
Sbjct: 241 PTEPRAPATEELRIVDTPNAKTIAELVEQFKLPIEKT 277



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M AT +G DG++  + MG YGIG  RVVAA IE +HD +GII
Sbjct: 407 RGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H     ++  E++Y  L   G DV  DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + +   +VE K+R  G ++ +   E++ +
Sbjct: 527 GVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKTSEIVEF 565


>gi|212703017|ref|ZP_03311145.1| hypothetical protein DESPIG_01055 [Desulfovibrio piger ATCC 29098]
 gi|212673605|gb|EEB34088.1| hypothetical protein DESPIG_01055 [Desulfovibrio piger ATCC 29098]
          Length = 576

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/267 (48%), Positives = 179/267 (67%), Gaps = 8/267 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P +AE+ SHKL+LR GM+ + + G+Y +LPLG KAL+NV  ++REE
Sbjct: 1   MRFSSTYIPTLKESPSEAEVVSHKLLLRAGMVRKLTSGVYIYLPLGLKALENVQRVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +   DLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MDAAGFSELLMPMVIPGDLWKETGRWEYYGKELLRFKDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD +  G+  SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDSSDAGADESYKLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDF 239
           Y RIF RLGL+   + A++G IGG+ SHEF+VLADTGE T   C++        + N + 
Sbjct: 181 YCRIFKRLGLRFRAVEADTGSIGGNFSHEFMVLADTGEDTIAACTECSY-----AANVER 235

Query: 240 DDIISLNSIVEQWTAPY--AATSDVHN 264
            +++   +   +  APY   AT   H 
Sbjct: 236 AEVVWNGTPCTETCAPYEKVATPAAHT 262



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 97/153 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GTKYS  M A +   +GK++ + MG YGIG  RVVA+ IE +HD  GII
Sbjct: 402 KGIEVGHIFKLGTKYSDAMHAVYLDENGKENVMIMGCYGIGISRVVASAIEQNHDEHGII 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P +VAP +  L+N+    +  R   E+IYA L K G  V  DD  E+ G +F  ADL+G
Sbjct: 462 FPPTVAPVECILLNLDPGKEEVRAKAEEIYAMLCKAGVTVLLDDREERPGVKFKDADLIG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            P+Q+++G K +S   +E K R TG + ++ ++
Sbjct: 522 APMQLVLGGKGLSRGVLECKDRRTGEKGELPVD 554


>gi|238792729|ref|ZP_04636360.1| Prolyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238727837|gb|EEQ19360.1| Prolyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 572

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y ++F R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKVFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQIADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKT 559

Query: 432 EEVINY 437
            E+I++
Sbjct: 560 SEIIDF 565


>gi|52628042|gb|AAU26783.1| prolyl-tRNA synthase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 589

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 168/224 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 21  MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 81  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 141 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S
Sbjct: 201 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYS 244



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y    D+ N K  D  P+ K      RGIEVGH+F  G KY+  M+A+     G+   
Sbjct: 396 AKYDDAYDLRNVKEGDPSPDGKGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQLQT 455

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E +Y 
Sbjct: 456 MIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAESLYQ 515

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    VE K R++   + ++
Sbjct: 516 QLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCVEYKARISSETQLIN 575

Query: 431 LEEVINY 437
           L++V+N+
Sbjct: 576 LDKVVNF 582


>gi|148360654|ref|YP_001251861.1| prolyl-tRNA synthase [Legionella pneumophila str. Corby]
 gi|296106282|ref|YP_003617982.1| prolyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166980133|sp|A5IGL5|SYP_LEGPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148282427|gb|ABQ56515.1| prolyl-tRNA synthase [Legionella pneumophila str. Corby]
 gi|295648183|gb|ADG24030.1| prolyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 569

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 168/224 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSIESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYS 224



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y    D+ N K  D  P+ + +    RGIEVGH+F  G KY+  M+A+     G+   
Sbjct: 376 AKYDDAYDLRNVKEGDPSPDGRGMLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQLQT 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E +Y 
Sbjct: 436 MIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQTVKEQAESLYQ 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   + ++
Sbjct: 496 QLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQLIN 555

Query: 431 LEEVINY 437
           L++V+N+
Sbjct: 556 LDKVVNF 562


>gi|304413226|ref|ZP_07394699.1| Prolyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304284069|gb|EFL92462.1| Prolyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 597

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE  SHKLMLR GMI Q + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLATQKEIPADAESISHKLMLRAGMIQQVTSGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR+D YG E+LR  DR+++  + GPTHEEV+T + R+
Sbjct: 61  MNNAGAIEVSMPMVQPADLWQESGRWDKYGLELLRFVDRHERHFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   +QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M  +
Sbjct: 121 QIKSYKQLPLNLFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQKTYDTMHAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFSRIGLDFRAVQADTGSIGGSRSHEFQVLADSGEDDIVFS 224



 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 115/195 (58%), Gaps = 3/195 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N  + D+ P+ +   +  RGIEVGHIF  GT+YS  M+AT +  +GK   +
Sbjct: 385 PLPQVADIRNVVVGDASPDGQGTLLLKRGIEVGHIFQLGTQYSKIMNATIENKEGKKQAI 444

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE ++D  GI+WP+++APF+++++ +  H     ++  E +Y  
Sbjct: 445 TMGCYGIGVSRIVAAAIEQNYDEDGILWPEAIAPFQVAILPMNMHKSFRVQEQAEALYKA 504

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G +V  DD  E+ G  F   +L+G P  +++  +   + +VE K+R +G  + +  
Sbjct: 505 LSDHGVEVILDDRCERPGVMFTDMELIGVPNSIVISERNHDNQEVEYKNRRSGETQMIKS 564

Query: 432 EEVINYASHRFSNNR 446
           +++I++   + + +R
Sbjct: 565 DKIIDFLIAQITKHR 579


>gi|317129168|ref|YP_004095450.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315474116|gb|ADU30719.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 566

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/277 (47%), Positives = 181/277 (65%), Gaps = 14/277 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S +  P L++ P DAE+ SH+LMLR G+I Q + G+YS LPLG KAL  V AI+REE
Sbjct: 1   MKQSTFLAPTLRDVPSDAEVTSHQLMLRAGLIRQSTSGVYSLLPLGLKALKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA EM +P +Q ++LW ESGR+++YG E++RL DR+ +    GPTHEEV+T + R 
Sbjct: 61  MNRAGAQEMLMPAIQQSELWKESGRWEAYGPELMRLHDRHGREFALGPTHEEVITTVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ KFRDE RPRFGV+RSREFLMKDAYSFD + EG   SYNKM+ +
Sbjct: 121 DVKTYKKLPMTLYQIQTKFRDERRPRFGVLRSREFLMKDAYSFDTSQEGLDESYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +            S+++ F 
Sbjct: 181 YTNIFTRCGLDFRAVVADSGAMGGKDTHEFMVLSEIGEDTIAY----------SDSSSFA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             I +  +       Y  T+++  EK   + PE K +
Sbjct: 231 ANIEIAPV----NVEYETTNELLKEKELVNTPEKKSI 263



 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N +  D  P+ K       GIEVGH+F  GT+YS  M A +   +GK+  + MG Y
Sbjct: 382 ADLRNIQEGDPSPDGKGTIRFKEGIEVGHVFKLGTRYSEAMGAMYLDENGKNKPMIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA+IE  HD  GIIWP SV PF + ++ I    +  +   E++Y  L++   
Sbjct: 442 GIGVTRTLAAIIEQFHDESGIIWPTSVTPFDVHIVPINMKQEEQKQLAEELYNELTEERL 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +V  DD  E+ G +F  ADL GFP++V VG K  ++  VE+K R TG
Sbjct: 502 EVLIDDRPERPGVKFKDADLYGFPVRVTVGKK-ANEGVVELKVRKTG 547


>gi|119476901|ref|ZP_01617182.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119449708|gb|EAW30945.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 576

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/230 (54%), Positives = 166/230 (72%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +  ++E P DA + SH+LMLR GMI + S G+YSWLP+G + L  V AI+REE
Sbjct: 1   MRASQFLIATVKETPSDAVVISHQLMLRAGMIRKLSSGLYSWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +Q ++LW ESGR+  YG E+LR+ DR++ +   GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAQELLMPVVQPSNLWQESGRWQQYGPELLRITDRHNNSFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y  M  +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHNDQESLQQTYELMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y +IF RLGL+  P+ A++G IGG+ SHEF VLAD+GE  +  S D  DF
Sbjct: 181 YTKIFTRLGLRFRPVVADTGSIGGNASHEFHVLADSGEDDIAFS-DSSDF 229



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 108/180 (60%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ +    D  P+ K +    RGIEVGHIF  G KY+  + AT    +GKD  + MG YG
Sbjct: 389 DIRDVVAGDPSPDGKGILHIKRGIEVGHIFQLGAKYAEALKATVLNENGKDQTILMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           IG  R+VAA IE ++D KGIIWP S+APF+I++I +     V   +   K+Y +LS++G 
Sbjct: 449 IGMTRIVAAAIEQNNDEKGIIWPASIAPFQIAIIPLNMQKSVDVAEQSNKLYQQLSELGY 508

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA  +L+G P ++++G + + D K+E K R     + + +  +I++
Sbjct: 509 EVLLDDRNERPGVKFADMELIGIPHRIVIGDRGLKDGKMEYKGRQDSENQHIDISNIIDF 568


>gi|157962683|ref|YP_001502717.1| prolyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083515|sp|A8H6J5|SYP_SHEPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157847683|gb|ABV88182.1| prolyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 570

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/244 (50%), Positives = 168/244 (68%), Gaps = 8/244 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF +  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHIDQETMDETYEAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +  S +          + P+
Sbjct: 181 YSNILTRLGLAFRPVMADTGSIGGSMSHEFHVLANSGEDLIAYSTESDYAANIEKCEAPL 240

Query: 233 PSEN 236
           P+E 
Sbjct: 241 PTET 244



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    +  P  K   A  RGIEVGHIF  GT YS  M+A     +GK   +
Sbjct: 379 PEAPAFDLRNIIEGEPSPCGKGTIALLRGIEVGHIFQLGTNYSEAMNANVLDQNGKSQTL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE ++D +GIIWP+++APF + ++ +  H     +D  E++Y  
Sbjct: 439 LMGCYGVGVSRMVAAAIEQNNDDRGIIWPEAIAPFTVGILPMNMHKSHRVKDIAEQLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E K+R TG ++D+ L
Sbjct: 499 LNDAGIEVMFDDRKERPGVMFADMELIGIPHVVVIGDRNIDNGMFEYKNRRTGEKQDIPL 558

Query: 432 EEVINY 437
           ++++ +
Sbjct: 559 DQIVEF 564


>gi|212636240|ref|YP_002312765.1| prolyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|212557724|gb|ACJ30178.1| Prolyl-tRNA synthetase, bacterial [Shewanella piezotolerans WP3]
          Length = 596

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/267 (49%), Positives = 174/267 (65%), Gaps = 13/267 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 27  MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 86

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLW E+GR+D +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 87  MNKAGSVEILMPMVQPADLWQETGRFDKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 146

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 147 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLEQECMDETYEAMFQA 206

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           Y  I  RLGL   P+ A++G IGG LSHEF VLA++GE  +  S +          + P+
Sbjct: 207 YNNILTRLGLSFRPVMADTGSIGGSLSHEFHVLANSGEDLIAYSTESDYAANIEKCEAPM 266

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAAT 259
           P+E        +  S +     PYA T
Sbjct: 267 PTETRQ-----AATSEMTLVDTPYAKT 288



 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 109/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    ++ P  K   A  RGIEVGHIF  G+ YS  M A     +GK   +
Sbjct: 405 PSAPAFDLRNIIEGEASPCGKGTIALLRGIEVGHIFQLGSNYSEAMHANVLDQNGKSKTL 464

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE +HD +GIIWP+++APF++ ++ +  H     +D  E++Y  
Sbjct: 465 LMGCYGVGVSRMVAAAIEQNHDDRGIIWPEAIAPFQVGILPMNMHKSHRVKDMAEQLYQD 524

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E K+R TG ++D+  
Sbjct: 525 LTDAGMEVLFDDRKERAGVMFADMELVGLPNVVVIGDRNIDNGVFEYKNRRTGEKQDVPF 584

Query: 432 EEVINY 437
           ++++ +
Sbjct: 585 DQIVEF 590


>gi|167624874|ref|YP_001675168.1| prolyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083514|sp|B0TNJ5|SYP_SHEHH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167354896|gb|ABZ77509.1| prolyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 570

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/244 (50%), Positives = 168/244 (68%), Gaps = 8/244 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF +  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHIDQETMDETYEAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +  S +          + P+
Sbjct: 181 YNNILTRLGLSFRPVMADTGSIGGSMSHEFHVLANSGEDLIAYSTESDYAANIEKCEAPL 240

Query: 233 PSEN 236
           P+E 
Sbjct: 241 PTET 244



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P AA  D+ N    +  P  K V A  RGIEVGHIF  GT YS  M+A     +GK   +
Sbjct: 379 PEAAAFDLRNIIEGEPSPCGKGVIALLRGIEVGHIFQLGTNYSEAMNANVLDQNGKSKTL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE ++D +GIIWPD++APF + ++ +  H     +D  E++Y  
Sbjct: 439 LMGCYGVGVSRMVAAAIEQNNDDRGIIWPDAIAPFTVGILPMNMHKSHRVKDIAEQLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E K+R TG ++D+ L
Sbjct: 499 LNDAGIEVMFDDRKERPGVMFADMELIGIPHVVVIGDRNIDNGMFEYKNRRTGEKQDIPL 558

Query: 432 EEVINY 437
            +++ +
Sbjct: 559 GDIVEF 564


>gi|255320540|ref|ZP_05361720.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262379097|ref|ZP_06072253.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255302390|gb|EET81627.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298554|gb|EEY86467.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 571

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E  +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGALETFMPVTQPASLWEESGRYVQYGPELLRFNDRHTNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDQASLQETYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YCRIFSRLGLDFRPVQADTGSIGGSGSHEFHVLASSGEDDIAFSTE 226



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 3/171 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A +    D+ N    D  P+ K      RGIEVGHIF  G KYS  +     G DGK   
Sbjct: 382 ASFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEALGCKVLGEDGKPLT 441

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           V MG YGIG  RV+A+ IE ++D KGIIWP ++APF+++++ + AH      +A E +Y 
Sbjct: 442 VTMGCYGIGVTRVIASAIEQNYDEKGIIWPAAIAPFEVAIVPMNAHKSPRTLEAAEALYI 501

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R
Sbjct: 502 ELQAQGFDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGR 552


>gi|157376262|ref|YP_001474862.1| prolyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|157318636|gb|ABV37734.1| prolyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
          Length = 584

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/244 (51%), Positives = 168/244 (68%), Gaps = 8/244 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 16  MRVSKYLLSTQKETPADAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKVEAIVREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 76  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 136 EVNSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDETYETMFQA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +  S +          + P+
Sbjct: 196 YNNILTRLGLAFRPVMADTGSIGGSMSHEFHVLANSGEDLIAYSTESDYAANIEKAEAPM 255

Query: 233 PSEN 236
           P+E 
Sbjct: 256 PTET 259



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 98/159 (61%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+A     +GK   + MG YG+G  R+VAA IE +HD +GI 
Sbjct: 421 RGIEVGHIFQLGKNYSEAMNANVLDHNGKAQTLLMGCYGVGVSRMVAAAIEQNHDDRGIT 480

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF++ ++ +  H     +D  EK+Y  +   G +V +DD  E+ G  FA  +L+
Sbjct: 481 WPDAIAPFRVGILPMNMHKSHRVKDMAEKLYQDMQDAGFEVLFDDRKERAGVMFADMELV 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  V++G + + +   E K+R TG ++++  +++I++
Sbjct: 541 GLPHVVVIGDRNIDNGVFEYKNRRTGEKQEIPFDQIIDF 579


>gi|90408309|ref|ZP_01216474.1| prolyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90310610|gb|EAS38730.1| prolyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 573

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DA I SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTTQYLLSTQKEAPSDAVIVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q ADLWVE+GR+D YG E+LRL DR+D+  + GPTHEEV+T++ R 
Sbjct: 61  MERAGAVEILMPVVQPADLWVETGRWDKYGGELLRLKDRHDRDFVLGPTHEEVVTELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE RPRFGVMRSREF MKDAYSF L  E  + +Y  MF +
Sbjct: 121 EINSYKQLPLNLFQIQTKFRDETRPRFGVMRSREFTMKDAYSFHLEDECLEKTYQTMFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL+  P+ A+SG IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YCRIFERLGLEYRPVIADSGSIGGNSSHEFHVLAPSGEDAIAFSSE 226



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 113/189 (59%), Gaps = 5/189 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+ N +  D  P  K   +  RGIEVGHIF  G  YS  M+A+     GK+  + MG 
Sbjct: 386 TADLRNVQEGDLSPCGKGTLSITRGIEVGHIFQLGKTYSEAMNASVLNQQGKNQTLTMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSK 374
           YGIG  R+VAA IE ++D  GIIW +++APF + ++  N+K   +V  D  E+ YA L  
Sbjct: 446 YGIGISRIVAAAIEQNNDANGIIWNEALAPFSVVIVPMNMKKSHRVA-DLAERYYAELQA 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G  FA A+L+G P  +I+G + + +  +E K+R +G ++D+ +E+V
Sbjct: 505 AGIEVLFDDRKERPGVMFADAELIGIPHMLIIGDRSIDNGVIEYKNRKSGEKQDVKIEDV 564

Query: 435 INYASHRFS 443
           I +   + S
Sbjct: 565 IAFIKEQRS 573


>gi|91793895|ref|YP_563546.1| prolyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123060765|sp|Q12L53|SYP_SHEDO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91715897|gb|ABE55823.1| prolyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 571

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPLVQPADLWIETGRWEKFGPELLRFQDRHNRDFVLGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L       +Y  MF +
Sbjct: 121 EVSSYKQLPLSLYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHLDQGTMDETYQAMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL   P+ A++G IGG LSHEF VLA++GE  +  S
Sbjct: 181 YNNIFTRMGLAFRPVLADTGSIGGSLSHEFHVLANSGEDLIAYS 224



 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    ++ P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLATAADIRNVVEGEATPDGLGTYAMARGIEVGHIFQLGTNYSKAMNATVLDENGKSQVM 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE +HD +GI+ P+++APF + ++ +  H      D  EK+Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNHDDRGIMLPEALAPFTVGILPMNMHKSHRVADIAEKLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+ L
Sbjct: 499 LNDAGIEVLLDDRKERPGVMFADMELIGLPHVVVIGDRNIDAGVFEYKNRRTGEKQDIPL 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQIVDF 564


>gi|146283154|ref|YP_001173307.1| prolyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166980144|sp|A4VNB4|SYP_PSEU5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145571359|gb|ABP80465.1| prolyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 571

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+W+P+G +AL    AI+REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWMPMGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNKAGALEVLMPAIQPAELWQESGRWEQYGPELLRLKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF L  E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLNQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YCNIFTRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAFS 224



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 117/191 (61%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M+    G +GK   +
Sbjct: 378 PLPQVADLRNVVAGDPSPDGKGSLVIKRGIEVGHIFQLGTKYSEAMNCQVMGENGKPATL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE ++D +GI+WPD++APF+I+L+ +K   +  R+A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNYDERGILWPDALAPFQIALVPMKYETEAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +E KHR     + ++
Sbjct: 498 TAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSDRGLADGMLEYKHRRDAQPQQVA 557

Query: 431 LEEVINYASHR 441
           + +++++ + R
Sbjct: 558 VSDILSFINSR 568


>gi|254360942|ref|ZP_04977088.1| proline--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261492183|ref|ZP_05988753.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494250|ref|ZP_05990749.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092421|gb|EDN73484.1| proline--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261310102|gb|EEY11306.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312163|gb|EEY13296.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 571

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/276 (49%), Positives = 178/276 (64%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LWVESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGERDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L EN
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEN 268



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 4/182 (2%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K      RGIEVGHIF  G KYS  M AT +G DGK   + MG Y
Sbjct: 383 ADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           GIG  RVVAA IE  +D +GIIWP D +APF ++++ +  H  +  +   E++YA L   
Sbjct: 443 GIGVTRVVAAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQ 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R +G ++ ++ E ++
Sbjct: 503 GVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLL 562

Query: 436 NY 437
            +
Sbjct: 563 AF 564


>gi|238759923|ref|ZP_04621077.1| Prolyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238701830|gb|EEP94393.1| Prolyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 572

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/277 (47%), Positives = 176/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S         +F +   
Sbjct: 181 YSKIFARMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTESDYAANIEFAEALA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           PSE            D  +  ++  +VEQ+  P   T
Sbjct: 241 PSEPRTGATEELRIIDTPNAKTIAELVEQFKLPIEKT 277



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNYDERGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRIGEKQMIKT 559

Query: 432 EEVINY 437
            E+I +
Sbjct: 560 SEIIEF 565


>gi|170727590|ref|YP_001761616.1| prolyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|226701338|sp|B1KNR3|SYP_SHEWM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169812937|gb|ACA87521.1| prolyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 569

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 159/218 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDETYESMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE
Sbjct: 181 YSNILTRLGLAFRPVIADTGSIGGSMSHEFHVLANSGE 218



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+A     +GK   + MG YG+G  R+VAA IE +HD +GII
Sbjct: 406 RGIEVGHIFQLGKNYSEAMNANVLDQNGKAQTLLMGCYGVGVSRMVAAAIEQNHDDRGII 465

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF++ ++ +  H     +D  E++Y  LS  G +V +DD  E+ G  FA  +L+
Sbjct: 466 WPDAIAPFRVGILPMNMHKSHRVQDMAEQLYKDLSDAGIEVLFDDRKERAGVMFADMELI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  V++G + +     E K+R TG ++++  ++++ +
Sbjct: 526 GLPHVVVIGDRNIDAGVFEYKNRRTGEKQEVPFDQIVEF 564


>gi|146329716|ref|YP_001210021.1| prolyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|166980118|sp|A5EXK9|SYP_DICNV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146233186|gb|ABQ14164.1| prolyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 572

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 162/221 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++L   +E+P +AE+ SH+LMLR GMI Q + GIYSWLPLG + L+ V+AIIREE
Sbjct: 1   MRLSQFWLVTKKESPAEAEVISHQLMLRAGMIRQTAVGIYSWLPLGLRVLNKVSAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P  Q A+LW ESGR+ +YG E+ R  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEVVMPAAQPAELWQESGRWHAYGPELQRFIDRHQRDYCIGPTHEEVVTDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF+MKD YSFDL   G K+SY KM+ +
Sbjct: 121 DLSSYKQLPVNLYQIQTKFRDEIRPRFGVMRGREFVMKDGYSFDLDVAGMKNSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF RLGL   P+ A++G IGG  SHEF VLA+TGE  +
Sbjct: 181 YCRIFDRLGLNYRPVIADNGAIGGTGSHEFHVLAETGEDSI 221



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 99/180 (55%), Gaps = 3/180 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+ N    D  P+ +   +  RGIEVGH+F  G KYS  M+ T    DG      MG 
Sbjct: 384 TADIRNVVEGDPSPDGQGTLLIRRGIEVGHVFQLGEKYSKAMNLTVPLEDGTLCTPLMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  RV+AA IE +HD  GIIW   +APF ++++ I A   +  RDA E +Y +  + 
Sbjct: 444 YGIGVTRVIAAAIEQNHDENGIIWSKELAPFSVAILPINADKSEAVRDAAEALYQKFLQA 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD   + G  FA  DL+G P ++++  K ++   VE K R       +SLEE++
Sbjct: 504 GVDVVLDDRNRRAGVMFADIDLIGIPARIVISDKTLATGSVEFKRRNEQETFHISLEEIV 563


>gi|145598925|ref|YP_001163001.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|166980173|sp|A4TL66|SYP_YERPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145210621|gb|ABP40028.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides F]
          Length = 572

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/277 (46%), Positives = 176/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S         +F +   
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTGSDYAANIEFAEALA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P+E            D  +  ++  +VEQ+  P   T
Sbjct: 241 PTEPRAPATEELRIVDTPNAKTIAELVEQFKLPIEKT 277



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M AT +G DG++  + MG YGIG  RVVAA IE +HD +GII
Sbjct: 407 RGIEVGHIFQLGTKYSEVMKATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H     ++  E++Y  L   G DV  DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + +   +VE K+R  G ++ +   E++ +
Sbjct: 527 GVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKTSEIVEF 565


>gi|153947724|ref|YP_001400022.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|170023340|ref|YP_001719845.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|166980172|sp|A7FFJ4|SYP_YERP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701362|sp|B1JQI5|SYP_YERPY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152959219|gb|ABS46680.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|169749874|gb|ACA67392.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
          Length = 572

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/277 (46%), Positives = 176/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S         +F +   
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTGSDYAANIEFAEALA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P+E            D  +  ++  +VEQ+  P   T
Sbjct: 241 PTEPRAPATEELRIVDTPNAKTIAELVEQFKLPIEKT 277



 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M AT +G DG++  + MG YGIG  RVVAA IE +HD +GII
Sbjct: 407 RGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H     ++  E++Y  L   G DV  DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + +   +VE K+R  G ++ +   E++ +
Sbjct: 527 GVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKTSEIVEF 565


>gi|74318130|ref|YP_315870.1| prolyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|74057625|gb|AAZ98065.1| prolyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
          Length = 579

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 164/224 (73%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL   +E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  V A++REE
Sbjct: 4   MRTTQFFLSTTKEAPSEAELVSHKLMLRAGLIKRLGSGLYTWMPLGLRVLRRVEAVVREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TD+ R 
Sbjct: 64  MNRAGAIELLMPAVQPAELWQETGRWAQFGPQMLKIKDRHEREFCFGPTHEEVITDLARR 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E    +Y  M+ +
Sbjct: 124 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHASRESLAATYQAMYDA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  + +C
Sbjct: 184 YGRIFTRLGLRFRAVAADTGAIGGSASHEFHVLADSGEDLIAYC 227



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 100/166 (60%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   A  RGIEVGH+F  G KYS  M+AT+    GK   ++MG 
Sbjct: 386 VADIRNVVAGDPSPDGKGTLALCRGIEVGHVFQLGNKYSQAMNATYLDEAGKAQAMEMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA +E +HDGKGI+WP S+APF + ++ I        ++A + +YA L  V
Sbjct: 446 YGIGVSRIVAAAVEQNHDGKGIVWPASMAPFSVVIVAIGYGKSASVKNAADTLYADLMAV 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G +V  DD  E+ G  FA A+L+G P +V +G + +++  VE + R
Sbjct: 506 GVEVLLDDRDERPGVMFADAELVGIPHRVTLGERGLNEGVVEYQPR 551


>gi|22126985|ref|NP_670408.1| prolyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45442549|ref|NP_994088.1| prolyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108806542|ref|YP_650458.1| prolyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108813091|ref|YP_648858.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|149366930|ref|ZP_01888963.1| prolyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162418775|ref|YP_001607747.1| prolyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165927072|ref|ZP_02222904.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939831|ref|ZP_02228371.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011913|ref|ZP_02232811.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211331|ref|ZP_02237366.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400131|ref|ZP_02305649.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419446|ref|ZP_02311199.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425324|ref|ZP_02317077.1| prolyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470133|ref|ZP_02334837.1| prolyl-tRNA synthetase [Yersinia pestis FV-1]
 gi|218928237|ref|YP_002346112.1| prolyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229837776|ref|ZP_04457936.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229840998|ref|ZP_04461157.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843099|ref|ZP_04463249.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903534|ref|ZP_04518647.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270487315|ref|ZP_06204389.1| proline--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503084|ref|YP_003567146.1| prolyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|116256081|sp|Q7CH25|SYP_YERPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123246276|sp|Q1CFH2|SYP_YERPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123372686|sp|Q1CAK9|SYP_YERPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701361|sp|A9R371|SYP_YERPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21960030|gb|AAM86659.1|AE013912_3 proline tRNA synthetase [Yersinia pestis KIM 10]
 gi|45437414|gb|AAS62965.1| prolyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108776739|gb|ABG19258.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|108778455|gb|ABG12513.1| prolyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|115346848|emb|CAL19734.1| prolyl-tRNA synthetase [Yersinia pestis CO92]
 gi|149290544|gb|EDM40620.1| prolyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162351590|gb|ABX85538.1| prolyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165912234|gb|EDR30871.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920968|gb|EDR38192.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989179|gb|EDR41480.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207102|gb|EDR51582.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962187|gb|EDR58208.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050839|gb|EDR62247.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055724|gb|EDR65508.1| prolyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679304|gb|EEO75407.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229689975|gb|EEO82034.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229697364|gb|EEO87411.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229704153|gb|EEO91165.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361122|gb|ACY57843.1| prolyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365363|gb|ACY61920.1| prolyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270335819|gb|EFA46596.1| proline--tRNA ligase [Yersinia pestis KIM D27]
 gi|294353543|gb|ADE63884.1| prolyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320014203|gb|ADV97774.1| prolyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 572

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/277 (46%), Positives = 176/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S         +F +   
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFSTGSDYAANIEFAEALA 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P+E            D  +  ++  +VEQ+  P   T
Sbjct: 241 PTEPRAPATEELRIVDTPNAKTIAELVEQFKLPIEKT 277



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M AT +G DG++  + MG YGIG  RVVAA IE +HD +GII
Sbjct: 407 RGIEVGHIFQLGTKYSEVMKATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H     ++  E++Y  L   G DV  DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + +   +VE K+R  G ++ +   E++ +
Sbjct: 527 GVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKTSEIVEF 565


>gi|212710377|ref|ZP_03318505.1| hypothetical protein PROVALCAL_01437 [Providencia alcalifaciens DSM
           30120]
 gi|212686959|gb|EEB46487.1| hypothetical protein PROVALCAL_01437 [Providencia alcalifaciens DSM
           30120]
          Length = 572

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/303 (46%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHKLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+G     + A++G IGG+ SHEF VLA +GE  V  S +  DF   + N +F 
Sbjct: 181 YSKIFTRIGFDFRAVHADTGSIGGNASHEFQVLAQSGEDDVVFSTE-SDF---AANIEFA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           + ++ N    Q  AP   + ++H   L D+   N +  A  +E         +++LP+  
Sbjct: 237 EAVAPNV---QRAAP---SQEMH---LVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 104/165 (63%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M A+ +  +G +  V MG YGIG  R+VAA IE SHD +GII
Sbjct: 407 RGIEVGHIFQLGTKYSEAMKASVQNEEGHNQIVTMGCYGIGVTRIVAAAIEQSHDDRGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF ++++ +  H     ++  EK+YA L   G DV +DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFHVAILPMNMHKSYRVKEVAEKLYADLKAQGIDVIFDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + +  ++VE K R +  ++ + L+ V+++   + +
Sbjct: 527 GVPYTIVIGDRNLDTNQVEYKSRRSDDKQLVGLDNVVSFLKEKLA 571


>gi|114152274|sp|Q3SH24|SYP_THIDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 576

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 164/224 (73%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL   +E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  V A++REE
Sbjct: 1   MRTTQFFLSTTKEAPSEAELVSHKLMLRAGLIKRLGSGLYTWMPLGLRVLRRVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQETGRWAQFGPQMLKIKDRHEREFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E    +Y  M+ +
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHASRESLAATYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  + +C
Sbjct: 181 YGRIFTRLGLRFRAVAADTGAIGGSASHEFHVLADSGEDLIAYC 224



 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 100/166 (60%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   A  RGIEVGH+F  G KYS  M+AT+    GK   ++MG 
Sbjct: 383 VADIRNVVAGDPSPDGKGTLALCRGIEVGHVFQLGNKYSQAMNATYLDEAGKAQAMEMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA +E +HDGKGI+WP S+APF + ++ I        ++A + +YA L  V
Sbjct: 443 YGIGVSRIVAAAVEQNHDGKGIVWPASMAPFSVVIVAIGYGKSASVKNAADTLYADLMAV 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G +V  DD  E+ G  FA A+L+G P +V +G + +++  VE + R
Sbjct: 503 GVEVLLDDRDERPGVMFADAELVGIPHRVTLGERGLNEGVVEYQPR 548


>gi|50751644|ref|XP_422493.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Gallus gallus]
          Length = 470

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 161/428 (37%), Positives = 230/428 (53%), Gaps = 37/428 (8%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           SH+LML+ G+IH  S G Y  LP   ++++ +  +I       G  ++++P+L SA+LW 
Sbjct: 65  SHRLMLQGGLIHPASPGCYHLLPPAVRSMEKLIRLIDGAMRNIGGQKVNMPSLSSAELWR 124

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFR 140
            SGR++  G E+ RLADR+ K    GPTHEE +T++  +H   SYR LP   YQ+  KFR
Sbjct: 125 TSGRWEQMGPELFRLADRHGKEYCLGPTHEEAVTELVAAHSNLSYRQLPLRLYQVTRKFR 184

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE +PRFG++RSREF MKD Y+FD + E ++H+Y  +  +Y  +F RLGL+ + +RA +G
Sbjct: 185 DEPKPRFGLLRSREFYMKDMYTFDASEEAARHTYELVCTAYRSLFKRLGLRCVQVRAATG 244

Query: 201 PIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            IGG  SHEF + AD GE + V C          + N +  D        E+ TA  A  
Sbjct: 245 TIGGTASHEFQLPADIGEDRLVLCPAGHF-----AANVEMVD--------EEQTACPAC- 290

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                EKL  S         RGIEVGH FY GTKYS   +A F   + K    +MG YG+
Sbjct: 291 ----GEKLTQS---------RGIEVGHTFYLGTKYSSVHNAAFYTPENKLQLAEMGCYGL 337

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC--EKIY----ARLS 373
           G  R++AA IE       I WP  +AP+++  I  K   +  R A   E +Y      L 
Sbjct: 338 GVTRILAASIEVLSTEDSIRWPSLIAPYQVCFIPPKKGSREERGAALLEHLYDDVAEALP 397

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMSL 431
           ++  DV  DD  +  IG +   A+ LG+P  V+ G +   D  V E+  + +G    ++ 
Sbjct: 398 RLAGDVVLDDRTQMTIGKRLKDANKLGYPYVVVAGRRVCEDPPVFEVWDQSSGTVLYLTK 457

Query: 432 EEVINYAS 439
           E VI   S
Sbjct: 458 EGVIELLS 465


>gi|91774775|ref|YP_544531.1| prolyl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|123254834|sp|Q1H497|SYP_METFK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91708762|gb|ABE48690.1| prolyl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 573

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 167/224 (74%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P++AE+ASHKLMLR G+I +   G+YSW+PLG + L  V  I+REE
Sbjct: 1   MRASQFFLATQKEAPQEAELASHKLMLRAGLIKRLGSGLYSWMPLGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPAVQPKELWEETGRWAVFGPQMLKIRDRHERDFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKD YSF  + E  + +Y+ M+ +
Sbjct: 121 EIRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDGYSFHTSLESLQQTYDTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y  IF+RLGLK   +RA++G IGGD SHEF VLAD+GE  + +C
Sbjct: 181 YSNIFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYC 224



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 106/181 (58%), Gaps = 3/181 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF   TKY+  M AT+   +G+  +++MG 
Sbjct: 387 VADIRNVVEGDPSPDGKGCISLCRGIEVGHIFQLRTKYTEAMEATYLDENGQKQFMEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE  +D +GII+P ++APF +++  I     +  + A   +Y  LS +
Sbjct: 447 YGIGVSRIVGAAIEQGNDERGIIFPAAMAPFSVAIAPIGYDKSEAVQSAAHALYDELSAL 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G  FA  +L+G P ++++G + + + +VE + R     E ++L +++
Sbjct: 507 GIDVLLDDRGERPGVMFADLELIGIPHRIVIGDRGLKEGQVEYQARTAASAETVALADIV 566

Query: 436 N 436
           +
Sbjct: 567 S 567


>gi|188533062|ref|YP_001906859.1| prolyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|226701287|sp|B2VDZ9|SYP_ERWT9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188028104|emb|CAO95961.1| Prolyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 572

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 188/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  +  S            +D+ 
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDIVFST----------GSDY- 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + N  + +   P    +D   E++  + PE K ++              +++LP+  
Sbjct: 230 ---AANIEMAEALPPAGGRADATQERVQFATPEAKTIAD----------LVEQFTLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           Q   P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M A+ +G DG+
Sbjct: 376 QRDLPLPRIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKASVQGEDGR 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEK 367
           +  + MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E 
Sbjct: 436 NQTLTMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEA 495

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G + 
Sbjct: 496 LYQQLRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGERNLDNDEIEYKARRGGEKR 555

Query: 428 DMSLEEVINY 437
            +  +E++++
Sbjct: 556 LIKTDEIVDF 565


>gi|77918296|ref|YP_356111.1| prolyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|114152225|sp|Q3A6R6|SYP_PELCD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77544379|gb|ABA87941.1| prolyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 571

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 120/221 (54%), Positives = 161/221 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + Y LP L+E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V  I+REE
Sbjct: 1   MRYTDYLLPTLKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +  ++LW ESGR++ YGKE+LR  DR D +   GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAMELLMPMVVPSELWEESGRWEHYGKELLRFTDRKDASFCLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  +Y KM+ +
Sbjct: 121 TVRSYRQLPLNLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDIDEAGADVAYEKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GLK   + A++G IGG  SHEF+VLA +GE  +
Sbjct: 181 YRRIFERCGLKFRAVEADTGNIGGSSSHEFMVLAASGEDAI 221



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 93/154 (60%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GTKYS  + AT     G+D  + MG YGIG  R VAA IE +HD  GI+
Sbjct: 403 RGIEVGHVFKLGTKYSAALGATVLDDQGQDRELFMGCYGIGVGRTVAAAIEQNHDENGIV 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF + +  +    +    A E +YA L  +G +V  DD  E+ GS+F  ADL+G
Sbjct: 463 FPMPIAPFHVLVTVVNPRQEEVLAAAENLYAELQALGVEVLLDDRDERPGSKFKDADLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            PL++ VG++ + ++ VE++ R  G R  + L E
Sbjct: 523 IPLRLTVGARGLKENAVELQERAGGERRMLPLAE 556


>gi|323144099|ref|ZP_08078739.1| proline--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416114|gb|EFY06808.1| proline--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 593

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 155/226 (68%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+ENP +A + SH+LMLR G+I Q + GIY WLP G + L  V  IIREE
Sbjct: 22  MRTSKYLLSTLKENPVEAAVVSHRLMLRAGLIRQIASGIYVWLPTGMRVLQKVEKIIREE 81

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGRY+ YG E+ RL DR     + GPTHEEV+T I R 
Sbjct: 82  LNRAGAIELFMPFVQPADLWKESGRYEKYGPELCRLKDRKKNEFVLGPTHEEVITAIARR 141

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS R LP   YQIQ KFRDE+RPRFGVMR REF+MKDAYSF +     + +Y  M+ +
Sbjct: 142 EIKSARQLPINLYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFHIDHASLEKTYKDMYDA 201

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y RIF RLGL   P+ A++G IGG  SHEF VLAD GE T VF  K
Sbjct: 202 YSRIFTRLGLDFRPVEADNGSIGGSSSHEFQVLADAGEDTIVFSDK 247



 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 108/164 (65%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG +F  GTKYS  M AT  G DGK   +QMG YGIG  RV+AA IE  HD KGII
Sbjct: 430 KGIEVGQVFMLGTKYSESMGATVLGEDGKPINMQMGCYGIGVTRVIAAAIEQHHDDKGII 489

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPDS+APF+++++ IK +  Q  R+A EK+YA L   G +V +DD  E+ G  FA  +L+
Sbjct: 490 WPDSMAPFQVAIVAIKPNKSQAVREAAEKLYAELEAKGVEVLYDDRDERPGVMFADMELI 549

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  + +G + ++   VE K R TG +E++S+++++++   + 
Sbjct: 550 GIPHVITIGDRGLAAGSVEYKSRKTGQKEEVSVDKILDFVCAKL 593


>gi|152977868|ref|YP_001343497.1| prolyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171472919|sp|A6VKR5|SYP_ACTSZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150839591|gb|ABR73562.1| prolyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 571

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRSMASGLYNWLPTGVKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +QSA+LW ESGR++ YG E+LR +DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQSAELWQESGRWEQYGPELLRFSDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y  M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTQESLQQTYEVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YTNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 106/181 (58%), Gaps = 4/181 (2%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  G KYS  M+AT +G DGK   + MG YG
Sbjct: 384 DLRNVAEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMNATVQGEDGKPLVMTMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           IG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  R   E++Y  L   G
Sbjct: 444 IGVTRVVAAAIEQHHDERGIIWPTDEIAPFTVAIVPMNMHKSESVRAFAEELYQTLKAQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  E+ G  FA  +L+G P  V++G K +   ++E K+R  G ++ ++ + ++ 
Sbjct: 504 VDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDKGEIEYKNRRNGEKQMIAKDRLLA 563

Query: 437 Y 437
           +
Sbjct: 564 F 564


>gi|238021436|ref|ZP_04601862.1| hypothetical protein GCWU000324_01336 [Kingella oralis ATCC 51147]
 gi|237868416|gb|EEP69422.1| hypothetical protein GCWU000324_01336 [Kingella oralis ATCC 51147]
          Length = 611

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/264 (49%), Positives = 175/264 (66%), Gaps = 7/264 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V AI+REE
Sbjct: 45  MKASQFFISTLKEAPAEAVLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAIVREE 104

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D A  + PT EE++TDI R 
Sbjct: 105 MNRAGAIELLMPVVQPADLWKESGRWDFYGDELLRITDRHDNAFCFSPTCEELITDIVRK 164

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF    E  K +Y  M+ +
Sbjct: 165 EINSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADFESLKATYQTMYDA 224

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF+RLGL   P+ A++G IGG  SHEF VLAD+GE  V    D  D+   + N +  
Sbjct: 225 YCRIFNRLGLDYRPVAADTGSIGGTGSHEFQVLADSGE-DVIAYSDASDY---AANVELA 280

Query: 241 DIISLNSIVEQWTAPYAATSDVHN 264
             + L+        P  A + +H 
Sbjct: 281 QTLPLSGC---RVVPAQALAKIHT 301



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 99/159 (62%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KYS  ++A+F  ++GK   ++MG YGIG  R+VAA IE ++D +GI
Sbjct: 448 ARGIEVGHVFQLRDKYSAALNASFLDSNGKSQIMEMGCYGIGITRIVAAAIEQNNDERGI 507

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW +++APF + ++  N K  + V R+A ++IYA L   G DV  DD  E+ G     ++
Sbjct: 508 IWTEAMAPFSVVIVPMNYKKSNSV-REAADQIYADLQAAGVDVLLDDRDERAGVLLNDSE 566

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R +G    + L E++
Sbjct: 567 LLGIPHRIVIGDRALKEGNVEYAERRSGESISVPLNEIV 605


>gi|226945724|ref|YP_002800797.1| prolyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259511575|sp|C1DRG4|SYP_AZOVD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226720651|gb|ACO79822.1| prolyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 571

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/278 (47%), Positives = 181/278 (65%), Gaps = 20/278 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+LMLR GMI + + G+Y+WLPLG +AL    AI+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPLGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDKAGALEVLMPAIQPAELWQESGRWEQYGPELLRIRDRHAREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF LT E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLTQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF--------PI 232
           Y  IF RLGL+  P++A++G IGG  SHEF VLA +GE  +  S D  D+         I
Sbjct: 181 YCNIFSRLGLEFRPVQADTGSIGGTGSHEFHVLAASGEDDIAFS-DSSDYAANIEKAEAI 239

Query: 233 PSENT-----------DFDDIISLNSIVEQWTAPYAAT 259
           P E             D  D  +++ +V Q+  P   T
Sbjct: 240 PREKARAAASEELRLVDTPDARTIDELVRQFGLPVEKT 277



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  M+    G +GK   +
Sbjct: 378 PLPQVADLRNVVEGDPSPDGQGSLVIKRGIEVGHIFQLGTKYSEAMNCKVLGENGKPVTL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE ++D +GI+WP ++APF+I+L+ +K      R+A +++YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNYDERGILWPQALAPFQIALVPMKYESAAVREATDRLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + + 
Sbjct: 498 VAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSERGLAEGTLEYKGRRETEVQAIP 557

Query: 431 LEEVINYASHRF 442
             ++I +  +R 
Sbjct: 558 AADLITFLGNRI 569


>gi|290473678|ref|YP_003466550.1| proline tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289172983|emb|CBJ79754.1| proline tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 573

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GM  + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMTRKLASGLYNWMPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFEDRGARPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 EVTSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+GL    + A++G IGG  SHEF VLAD+GE  +  S +
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLADSGEDDIAFSTE 226



 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 114/186 (61%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +   +  RGIEVGHIF  GTKYS  + AT +  DG +  V
Sbjct: 380 PLPEIADIRNVLEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSDALKATVQNEDGHNQVV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++L+ +  H     ++  EK+YA 
Sbjct: 440 SMGCYGIGVTRIVAAAIEQNHDDRGIIWPDAIAPFQVALLPMNMHKSYRVKEVAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + + + +VE K+R  G ++ + L
Sbjct: 500 LRANGIDVIFDDRKERPGVMFADMELIGVPHTLVIGDRNLDNGEVEYKYRRNGDKQMLKL 559

Query: 432 EEVINY 437
           E +I Y
Sbjct: 560 EGIIEY 565


>gi|90020556|ref|YP_526383.1| Pectate lyase/Amb allergen [Saccharophagus degradans 2-40]
 gi|114152247|sp|Q21MA8|SYP_SACD2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89950156|gb|ABD80171.1| prolyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 575

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 163/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY +   +E P DAE+ SH+LMLR G+I + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRASKYLIATYKETPADAEVISHQLMLRAGLIRKLASGLYNWLPAGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+A   GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPAELWEESGRWQQYGPELLRINDRHDRAFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E  + +Y+ M  +
Sbjct: 121 ELKSYKQLPANFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHASQECLQETYDIMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S +
Sbjct: 181 YCKIFDRIGLDYRPVLADTGSIGGTGSHEFHVLADSGEDDIAFSTE 226



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 116/191 (60%), Gaps = 6/191 (3%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N  + D  P  K      RGIEVGHIF  GTKYS  M A+    +GKD  + MG YG
Sbjct: 386 DIRNVVIGDPSPCGKGTIDIKRGIEVGHIFQLGTKYSEAMKASVLDENGKDKTMIMGCYG 445

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVG 376
           IG  R+VA+ IE ++D  GIIWPD++APF +++  IN++  + V +  CE++YA+L+++G
Sbjct: 446 IGVSRIVASAIEQNYDDNGIIWPDAIAPFHVAIVPINMQKSEAVAQK-CEELYAQLNQLG 504

Query: 377 CDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DV   D+   ++G   A  +L+G P +++VG + +   ++E K R     +D++++++I
Sbjct: 505 YDVLLMDEPKARLGGMLADTELMGIPHRIVVGDRGLEKGQLEYKCRRDSDSQDIAVDDII 564

Query: 436 NYASHRFSNNR 446
            + ++     +
Sbjct: 565 EFINNAVKTGK 575


>gi|304396668|ref|ZP_07378549.1| prolyl-tRNA synthetase [Pantoea sp. aB]
 gi|304356177|gb|EFM20543.1| prolyl-tRNA synthetase [Pantoea sp. aB]
          Length = 572

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAVEILMPVVQPADLWQESGRWEEYGPELLRIADRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQASLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S D
Sbjct: 181 YSQIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSTD 226



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 112/186 (60%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A+ +D+ N    D  P+ K      RGIEVGHIF  GTKYS  + A+ +G DG++  +
Sbjct: 380 PLASVADIRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSDALKASVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +        ++  E++YA 
Sbjct: 440 SMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G ++ +  
Sbjct: 500 LRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKSRRAGEKQMIKQ 559

Query: 432 EEVINY 437
           +E++ +
Sbjct: 560 DEIVEF 565


>gi|34496029|ref|NP_900244.1| prolyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|81834766|sp|Q7P0J3|SYP_CHRVO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34101883|gb|AAQ58250.1| prolyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 568

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DA+I S KLM+R G I + + GIYSW+P+G + +  V  IIREE
Sbjct: 1   MRASQFFISTLKEAPADADITSQKLMIRAGFIRKQAAGIYSWMPMGLRVVRKVETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+S+P +Q A+LW E+GR+D+ G E+LR  DR+++     PT EEV+TDI R 
Sbjct: 61  MNRAGGIEVSLPVVQPAELWQETGRWDAMGAELLRFKDRHERDFALQPTAEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ M+ +
Sbjct: 121 ELRSYRALPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSAEDAGKSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE   V+C
Sbjct: 181 YRRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYC 224



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 7/183 (3%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ +   A  RGIEVGH+FY GTKYS  M+ATF   DGK    +MG YG
Sbjct: 383 DIRNVVEGDPSPDGQGALAIQRGIEVGHVFYLGTKYSAAMNATFLDEDGKPKPFEMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGC 377
           IG  R++ A IE ++D KG+IWPDS+APF + +  +     +  ++A +K+YA L   G 
Sbjct: 443 IGVTRILGAAIEQNYDDKGMIWPDSIAPFAVVVCPVGYDRSEAVKEAADKLYADLQARGV 502

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEE 433
           DV  DD GE+ G+ FA  +L+G P +V +G + + + KVE +HR     T +  D  LE 
Sbjct: 503 DVMLDDRGERPGAMFADWELIGAPHRVTIGDRGLKEGKVEYQHRRDSEATAVAADAILEH 562

Query: 434 VIN 436
           V++
Sbjct: 563 VLS 565


>gi|317047006|ref|YP_004114654.1| prolyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316948623|gb|ADU68098.1| prolyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 572

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 163/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWEESGRWEQYGPELLRIKDRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSSE 226



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYA 257
           GP+G  L+   I      +T  FC+           N D      +N     W    P  
Sbjct: 339 GPVG--LTMPVIADRTVAKTSDFCA---------GANIDGKHYAGIN-----WGRDLPEP 382

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  + A  +G DG++  + MG
Sbjct: 383 RVEDIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSDALKAAVQGEDGRNQIMTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +  H     ++  +++Y  L  
Sbjct: 443 CYGIGITRVVAAAIEQNHDERGIIWPAALAPFEVAILPMNMHKSFRVKEVADELYNALRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD  E+ G  FA  +L+G P  +++G + + ++++E K R    +E +   E+
Sbjct: 503 KGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNAEIEYKARSASEKEMIKHSEI 562

Query: 435 INY 437
           +++
Sbjct: 563 VDF 565


>gi|45387545|ref|NP_991118.1| probable prolyl-tRNA synthetase, mitochondrial [Danio rerio]
 gi|41350986|gb|AAH65673.1| Prolyl-tRNA synthetase (mitochondrial) [Danio rerio]
          Length = 477

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 147/405 (36%), Positives = 220/405 (54%), Gaps = 33/405 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    S +LM++TG+IH  + G + +LP+  ++L+ +  +I EE +  G  ++ +P L S
Sbjct: 66  DLTCRSQRLMVQTGLIHPSNPGCFYYLPVALRSLEKLVRLIDEEMHAIGGQKVDMPALCS 125

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQI 135
           A+LW +SGR++  GKEM RL DR++     GPTHEE +T++F S    SY+ LP   YQ+
Sbjct: 126 AELWKKSGRWELMGKEMFRLLDRHNGEYCLGPTHEEAVTELFASQTTMSYKKLPLLLYQV 185

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             KFRDE +P+FG++R REF MKD YSFD+  E + H+YN +  +Y RI  RL LK + +
Sbjct: 186 TRKFRDEQKPKFGLLRGREFYMKDMYSFDINEEAALHTYNSVCQAYRRILDRLHLKWVQV 245

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +A++G IGG LSHEF + AD GE ++    +                   ++ +E     
Sbjct: 246 QADTGNIGGTLSHEFQLPADIGEDKLLVCGN----------------CGFSANIETMEPG 289

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            A  S     KL +S         RGIEVGH FY GTKYS    A F  A       +MG
Sbjct: 290 QAKCSQCQTGKLTES---------RGIEVGHTFYLGTKYSQAFKALFVNASNVPAVAEMG 340

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI----NIKAHD--QVCRDACEKIY 369
            +G+G  R++AA IE       I WP  +AP+++ ++      KAH+  Q   +  + + 
Sbjct: 341 CFGLGVTRILAASIEVMSTEDAIHWPGLIAPYQVCVLPPKKGSKAHEATQKAEELAQSLG 400

Query: 370 ARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
             L  +  +V  DD  +  IG +   A +LG+P  V+VG   + D
Sbjct: 401 NSLPNLRGEVVLDDRTQMTIGKRLKDAKILGYPFVVVVGQTALDD 445


>gi|310764925|gb|ADP09875.1| prolyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 572

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 189/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +  S            +D+ 
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFST----------GSDY- 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + N  + +   P    +D   +++  + PE K ++              +++LP+  
Sbjct: 230 ---AANIEMAEALPPTGGRADATQQRVQFATPEAKTIAD----------LVEQFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 108/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E++Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEELYHQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  V++G + +   ++E K R  G +  M  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTVVIGERNLDSEEIEYKSRRAGEKRMMKT 559

Query: 432 EEVINY 437
            E++++
Sbjct: 560 NEIVDF 565


>gi|259907567|ref|YP_002647923.1| prolyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224963189|emb|CAX54673.1| Prolyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283477409|emb|CAY73325.1| proS [Erwinia pyrifoliae DSM 12163]
          Length = 572

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 189/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +  S            +D+ 
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFST----------GSDY- 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + N  + +   P    +D   +++  + PE K ++              +++LP+  
Sbjct: 230 ---AANIEMAEALPPTGGRADATQQRVQFATPEAKTIAD----------LVEQFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E++Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEELYHQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  V++G + +   +VE K R  G +  M  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGIPHTVVIGERNLDSEEVEYKSRRAGEKRMMKT 559

Query: 432 EEVINY 437
            E++++
Sbjct: 560 NEIVDF 565


>gi|261344716|ref|ZP_05972360.1| hypothetical protein PROVRUST_05973 [Providencia rustigianii DSM
           4541]
 gi|282567158|gb|EFB72693.1| proline--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 576

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+G     + A++G IGG+ SHEF VLA +GE  V  S +  DF   + N +F 
Sbjct: 181 YSKIFTRIGFDFRAVLADTGSIGGNASHEFQVLAQSGEDDVVFSTE-SDF---AANIEFA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           + ++ N    Q  AP   + ++H   L D+   N +  A  +E         +++LP+  
Sbjct: 237 EAVAPNV---QRAAP---SEEMH---LVDT--PNAKTIAELVE---------QFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 115/194 (59%), Gaps = 3/194 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T D+ N  + D  P+ K   +  RGIEVGHIF  GTKYS  M A+ +  +G +  V
Sbjct: 380 PLPETYDLRNVVVGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKASVQNEEGHNQIV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE SHD +GIIW D++APF+++++ +  H     ++  EK+YA 
Sbjct: 440 TMGCYGIGVTRIVAAAIEQSHDDRGIIWSDAIAPFQVAILPMNMHKSYRVKEVAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + +  ++VE K R +  +  + L
Sbjct: 500 LKAQGIDVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDTNQVEYKSRRSDDKALVGL 559

Query: 432 EEVINYASHRFSNN 445
           + V+++   + + N
Sbjct: 560 DNVVSFLKEKLATN 573


>gi|238897616|ref|YP_002923295.1| proline tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259511602|sp|C4K3K4|SYP_HAMD5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|229465373|gb|ACQ67147.1| proline tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 579

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/277 (46%), Positives = 181/277 (65%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTTQYLLSTLKELPADAEIISHQLMLRAGMIRKLASGLYTWLPTGTRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ES R++ YG E+LR ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAIEVVMPIVQPADLWQESERWEHYGPELLRFADRSERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFG+MR+REFLMKDAYSF  T E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEIRPRFGIMRAREFLMKDAYSFHNTLESLQETYQTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y +IF R+ L    ++A++G IGG  SHEF VLAD+GE ++  S         +  +  +
Sbjct: 181 YTKIFERMQLNFRAVQADTGSIGGSRSHEFQVLADSGEDEIVFSTVSDFAANIELAEALV 240

Query: 233 PSEN----------TDFDDIISLNSIVEQWTAPYAAT 259
           P E            D  +  +++ +VEQ++ P   T
Sbjct: 241 PHEKRASPCETLRIIDTPNAKTIDQLVEQFSIPIEKT 277



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 121/199 (60%), Gaps = 11/199 (5%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G +G+   +
Sbjct: 380 PLPIIEDLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAMGAKVQGENGRQQMM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYA 370
            MG YGIG  R+VAA IE  HD  GI+WP+++APF++++  I++K  D V R   E++YA
Sbjct: 440 IMGCYGIGVSRLVAAAIEQHHDQHGILWPEAIAPFQVAILPIHLKKSDAV-RQEAERLYA 498

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI----R 426
            LS +G DV +DD  E+ G  FA  +L+G P  +I+G + + ++++E ++R  GI    +
Sbjct: 499 ELSSLGMDVIFDDRQERPGVMFADMELIGIPHTLIIGDRDLENNELEYRYR--GIDDHKK 556

Query: 427 EDMSLEEVINYASHRFSNN 445
           + + + +V+++   + +++
Sbjct: 557 QQLKISDVVSFLLEKINSH 575


>gi|15596153|ref|NP_249647.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|107100413|ref|ZP_01364331.1| hypothetical protein PaerPA_01001438 [Pseudomonas aeruginosa PACS2]
 gi|218893073|ref|YP_002441942.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|81857350|sp|Q9I502|SYP_PSEAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701320|sp|B7UXX6|SYP_PSEA8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|9946862|gb|AAG04345.1|AE004529_11 prolyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|218773301|emb|CAW29113.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 571

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 130/279 (46%), Positives = 189/279 (67%), Gaps = 14/279 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +          + S+++D+ 
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDI----------VFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             I     V + +A  +AT D+   +L D+ P  K ++A
Sbjct: 231 ANIEKAEAVPRESARGSATEDM---RLVDT-PNTKTIAA 265



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 113/193 (58%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M  +     GK   +
Sbjct: 378 PLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLSVLSEQGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   +  + A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVKQATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P ++++  + +S+  +E K R     +++ 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLSEGVLEYKGRRDSESQNLP 557

Query: 431 LEEVINYASHRFS 443
           + E++++ + + S
Sbjct: 558 IGELMSFITEKLS 570


>gi|116048881|ref|YP_792318.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313105843|ref|ZP_07792106.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|122257988|sp|Q02IB8|SYP_PSEAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115584102|gb|ABJ10117.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878608|gb|EFQ37202.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 571

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 130/279 (46%), Positives = 189/279 (67%), Gaps = 14/279 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +          + S+++D+ 
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDI----------VFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             I     V + +A  +AT D+   +L D+ P  K ++A
Sbjct: 231 ANIEKAEAVPRESARGSATEDM---RLVDT-PNTKTITA 265



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 112/193 (58%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M        GK   +
Sbjct: 378 PLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLNVLSEQGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   +  + A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVKQATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P ++++  + +++  +E K R     +++ 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLNEGVLEYKGRRDSESQNLP 557

Query: 431 LEEVINYASHRFS 443
           + E++++ + + S
Sbjct: 558 IGELMSFITEKLS 570


>gi|152984493|ref|YP_001349901.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166980141|sp|A6VA16|SYP_PSEA7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150959651|gb|ABR81676.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 571

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 130/279 (46%), Positives = 189/279 (67%), Gaps = 14/279 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L  E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLNQESLQATYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +          + S+++D+ 
Sbjct: 181 YSKIFTRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDI----------VFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             I     V + +A  AA+ D+   +L D+ P+ K ++A
Sbjct: 231 ANIEKAEAVPRESARGAASEDM---RLVDT-PDTKTIAA 265



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 113/193 (58%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M  +     GK   +
Sbjct: 378 PLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLSVLSEQGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   +  R A +++YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVRQATDRLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +LLG P +++V  + +++  +E K R     +++ 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGVKFADMELLGIPHRIVVSDRGLNEGVLEYKGRRDSESQNLP 557

Query: 431 LEEVINYASHRFS 443
           + E++++ + + S
Sbjct: 558 IGELMSFITEKLS 570


>gi|296390688|ref|ZP_06880163.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 571

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 130/279 (46%), Positives = 189/279 (67%), Gaps = 14/279 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +          + S+++D+ 
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDI----------VFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             I     V + +A  +AT D+   +L D+ P  K ++A
Sbjct: 231 ANIEKAEAVPRESARGSATEDM---RLVDT-PNTKTIAA 265



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 112/193 (58%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M        GK   +
Sbjct: 378 PLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLNVLSEQGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   +  + A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVKQATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P ++++  + +++  +E K R     +++ 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLNEGVLEYKGRRDSESQNLP 557

Query: 431 LEEVINYASHRFS 443
           + E++++ + + S
Sbjct: 558 IGELMSFITEKLS 570


>gi|253999985|ref|YP_003052048.1| prolyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253986664|gb|ACT51521.1| prolyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 574

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 169/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+   +E P++AE+ SH+LMLR G+I +   G+Y+W+PLG + L  V  ++R+E
Sbjct: 1   MRASQFFIATQKEAPQEAELPSHRLMLRAGLIKRLGSGLYTWMPLGLRVLRKVETVVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR++++  +GPTHEEV+TD+ R 
Sbjct: 61  MNKAGALELLMPAVQPAELWQETGRWDVFGPQMLKITDRHERSFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHTSLESLEATYASMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y  +F+RLGLK   +RA++G IGGD SHEF VLAD+GE  + +C
Sbjct: 181 YSNVFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYC 224



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 110/182 (60%), Gaps = 5/182 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF   TKY+  M+AT++  +G+   ++MG 
Sbjct: 387 VADIRNVINGDPSPDGKGVLELCRGIEVGHIFQLRTKYAEAMNATYQAENGELKIMEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSK 374
           YGIG  R+V A IE  +D +GII+P ++APF +++  I +   D V +DA   +YA L +
Sbjct: 447 YGIGVSRIVGAAIEQGNDARGIIFPAAMAPFSVAIAPIGMDRSDAV-KDAALALYAELQQ 505

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G  FA  +L+G P +V++G + + + +VE + R     + ++L E+
Sbjct: 506 AGIDVLLDDRGERPGVMFADLELIGIPHRVVIGDRGLKEGQVEYQARTDEQAQSVALSEI 565

Query: 435 IN 436
           ++
Sbjct: 566 VS 567


>gi|329905673|ref|ZP_08274169.1| Prolyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547550|gb|EGF32358.1| Prolyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 578

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPADAEIVSHQLMMRAGMIKRLGSGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E++R+ DR+ +  I  PT EEV+TDI R+
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRWQEYGAELMRVKDRHGRDFIIQPTSEEVITDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY +Q KFRDE RPRFG+MR REF MKDAYSFD  P G K SY  MF +
Sbjct: 121 EIKSYRQLPVNFYHVQTKFRDERRPRFGLMRGREFTMKDAYSFDRDPAGMKQSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y+RIF R GL   P+ A++G IGG  SHEF V+ADTGE   V+C
Sbjct: 181 YVRIFTRFGLGFRPVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   + D+ N    D+ P+ K V A  RGIEVGH+F  GT+YS  M ATF   +GK   +
Sbjct: 386 PEPVSFDLRNVVAGDASPDGKGVLAIQRGIEVGHVFQLGTRYSEDMKATFLDENGKPQLL 445

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D KGIIWP S+APF+I L  +    ++  + A + + A 
Sbjct: 446 QMGCYGIGVTRILGAAIEQNFDDKGIIWPVSIAPFEIVLCPMGYDRNEAVKTAADTLLAD 505

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G D   DD GE+ G+ FA  +L+G P ++++G + + D K+E + R
Sbjct: 506 LLAAGIDAILDDRGERPGAMFADWELIGVPHRIVIGDRGLKDGKLEYQGR 555


>gi|313201958|ref|YP_004040616.1| prolyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312441274|gb|ADQ85380.1| prolyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 574

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 169/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+   +E P++AE+ SH+LMLR G+I +   G+Y+W+PLG + L  V  ++R+E
Sbjct: 1   MRASQFFIATQKEAPQEAELPSHRLMLRAGLIKRLGSGLYTWMPLGLRVLRKVETVVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR++++  +GPTHEEV+TD+ R 
Sbjct: 61  MNKAGALELLMPAVQPAELWQETGRWDVFGPQMLKITDRHERSFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHTSLESLEATYATMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y  +F+RLGLK   +RA++G IGGD SHEF VLAD+GE  + +C
Sbjct: 181 YSNVFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYC 224



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 110/182 (60%), Gaps = 5/182 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF   TKY+  M+AT++  +G+   ++MG 
Sbjct: 387 VADIRNVINGDPSPDGKGVLELCRGIEVGHIFQLRTKYAEAMNATYQAENGELKIMEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSK 374
           YGIG  R+V A IE  +D +GII+P ++APF +++  I +   D V +DA   +YA L +
Sbjct: 447 YGIGVSRIVGAAIEQGNDARGIIFPAAMAPFSVAIAPIGMDRSDAV-KDATLALYAELQQ 505

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G  FA  +L+G P +V++G + + + +VE + R     + ++L E+
Sbjct: 506 AGIDVLLDDRGERPGVMFADLELIGIPHRVVIGDRGLKEGQVEYQARTDEQAQSVALSEI 565

Query: 435 IN 436
           ++
Sbjct: 566 VS 567


>gi|220904224|ref|YP_002479536.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254782896|sp|B8IZD1|SYP_DESDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219868523|gb|ACL48858.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 574

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P DAE+ SHKL+LR GM+ + + G+Y +LPLG + ++ +   +REE
Sbjct: 1   MRFSSCYIPTLKESPADAEVISHKLLLRAGMVRRLTSGLYIYLPLGLRVINKIARTVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+ +P +Q  DLW E+GR++ YGKE+LR  DRN++    GPTHEEV+TD+ R 
Sbjct: 61  MEKAGFRELLMPMVQPGDLWKETGRWEHYGKELLRFKDRNEREYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFD T EG++ SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQVQTKFRDEIRPRFGLMRGREFMMKDGYSFDATAEGAEESYKIMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y+ IF RLGL+   + A++G IGG+ SHEF+VLADTGE T  FC
Sbjct: 181 YMSIFSRLGLRFRAVEADTGSIGGNFSHEFMVLADTGEDTIAFC 224



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 105/190 (55%), Gaps = 9/190 (4%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++ ++ V  W    A T+D       D  P    +    RGIEVGHIF  G KYS  M A
Sbjct: 370 LARDAAVTAWADLRAITAD-------DQCPRCGGRMELTRGIEVGHIFMLGLKYSEAMHA 422

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +GK+  + MG YGIG  RV AA IE +HD  GI++P  VAPF+  L+N+    + 
Sbjct: 423 VFLDENGKERTMIMGCYGIGVSRVAAAAIEQNHDEHGIVFPPPVAPFECVLLNLDPRSEE 482

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E+IYA L  +G +V  DD  E+ G +F  ADLLG P+Q++VG K +    VE K 
Sbjct: 483 VNAKVEEIYALLQGMGIEVLLDDREERPGVKFKDADLLGIPMQLVVGGKGLGRGIVECKD 542

Query: 421 RLTGIREDMS 430
           R TG + ++S
Sbjct: 543 RRTGEKGELS 552


>gi|302391162|ref|YP_003826982.1| prolyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302203239|gb|ADL11917.1| prolyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 569

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 163/226 (72%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ + P L+E P DAE+ SH+LMLR G++ +   GIYS LPLG K +  V  IIREE
Sbjct: 1   MKMSQMYSPTLKETPADAEVVSHQLMLRAGLMRKLGSGIYSHLPLGYKVIQKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P LQ A+LW ES R+  YG E++RL DR+ +    GPTHEEV+TD+ + 
Sbjct: 61  MNKAGAQEVLLPALQPAELWKESNRWADYGPELMRLEDRHKRDFCLGPTHEEVITDLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LPF  YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF+   E    SY KM+ S
Sbjct: 121 EVRSYKDLPFNLYQIQTKFRDEIRPRFGVLRSREFIMKDAYSFNPDKESLDESYEKMYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y+ IF R GL    + A++GPIGG  SHEF+VLAD+GE T VFCS+
Sbjct: 181 YVEIFDRCGLDFRTVVADNGPIGGTDSHEFMVLADSGEDTVVFCSE 226



 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 1/145 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVG +F  GTKYS  M AT+   +GK   + MG YGIG  R VAA IE +HD  GI
Sbjct: 403 TRGIEVGQVFKLGTKYSDSMKATYIDDNGKSQSIFMGCYGIGVTRTVAAAIEQNHDDYGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+AP+ + ++ +  +D+  +   E +Y  L++ G +  +DD  E+ G +F  ADL+
Sbjct: 463 IWPKSIAPYSVHIMQL-GNDEEIKRVSEDLYTALNQTGLEALYDDRSERAGVKFNDADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLT 423
           G P+QVI+G   + D+K+EIK R T
Sbjct: 522 GCPIQVIIGKNSLEDNKLEIKLRQT 546


>gi|312795091|ref|YP_004028013.1| Prolyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312166866|emb|CBW73869.1| Prolyl-tRNA synthetase (EC 6.1.1.15) [Burkholderia rhizoxinica HKI
           454]
          Length = 589

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 168/224 (75%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R GMI + + GIY+++P+G +++  V AI+REE
Sbjct: 12  MKASRFFIGTLKEAPADAEIVSHQLMVRAGMIRRVAGGIYNYMPIGLRSIRKVEAIVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ES R++ YG E+LR+ DR+D+  + GPTHEEV+TDI R 
Sbjct: 72  MNRAGAVELLMPAVQPAELWQESSRWEQYGPELLRVKDRHDRDFVVGPTHEEVVTDIARK 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 132 EIKSYRQMPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDRDRAGLQLSYQKMYDA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF RLGL+   + A++G IGG  SHEF V+A TGE  + +C
Sbjct: 192 YVRIFTRLGLEFRAVAADNGAIGGTGSHEFHVIAATGEDAIAYC 235



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 3/190 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N +  D  P+ +      RGIEVGH+F  GTKYS  M ATF   +GK   +
Sbjct: 393 PEPEVADLRNVRKGDPSPDGRGELDLCRGIEVGHVFQLGTKYSEAMGATFLDENGKPAPM 452

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D +GIIWP+++APF + L  +        R+   K+Y  
Sbjct: 453 MMGCYGIGITRILGAAIEQNFDERGIIWPEAIAPFHLVLCPMGYERSDAVREQAHKLYDE 512

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       + L
Sbjct: 513 LLGAGMDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDVEPTLLPL 572

Query: 432 EEVINYASHR 441
           E+   +   R
Sbjct: 573 EQAAAWVVER 582


>gi|160872889|ref|ZP_02063021.1| prolyl-tRNA synthetase [Rickettsiella grylli]
 gi|159121688|gb|EDP47026.1| prolyl-tRNA synthetase [Rickettsiella grylli]
          Length = 572

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/224 (56%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S ++LP L+E P DAEI SH+LMLR GMI + + GIYSWLPLG + L  V  I+REE
Sbjct: 1   MRSSHFYLPTLKEAPADAEIKSHQLMLRAGMIRKVASGIYSWLPLGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  A E+ +P LQ A+LW ES R+++YG E+LRL DR+ +A   GPTHEE++T + R 
Sbjct: 61  MNRIHAQEVLLPILQPAELWQESERWEAYGPELLRLTDRHQRAFCLGPTHEEIITALVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF         +Y  M  S
Sbjct: 121 EVRSYKQLPLIFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHPDKTSLSETYQMMHAS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGLK   + A++G IGG  SHEF VLA TGE  +F S
Sbjct: 181 YCRIFTRLGLKFRVVLADTGNIGGSQSHEFQVLAQTGEDHIFYS 224



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 3/196 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENK-RVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            P    +D+   ++ D  P+ K R+   RGIEVGHIF  G KY+  M+A    +  ++  
Sbjct: 376 CPLPPIADLRKVRVGDPSPDGKGRLKMERGIEVGHIFQLGNKYACAMNARITTSHAREIP 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYA 370
           ++MG YGIG  RVV   IE  HD +GIIWP ++APF++ +I I  H ++  ++A + +Y 
Sbjct: 436 MEMGCYGIGISRVVGGAIEQCHDDQGIIWPSAMAPFQVVIIPIAYHRNRSVKEAADTLYQ 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L +   DV  DD  E+ G  FA  DL+G P ++++  K + +  V  K R+      ++
Sbjct: 496 QLQQARIDVLLDDRKERPGKLFADNDLIGIPHRLVINEKMILEKTVAYKARIEKHEHPVN 555

Query: 431 LEEVINYASHRFSNNR 446
           LE ++N+   + +  R
Sbjct: 556 LENILNFLHQKINIPR 571


>gi|224823461|ref|ZP_03696570.1| prolyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224603916|gb|EEG10090.1| prolyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 571

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/270 (49%), Positives = 176/270 (65%), Gaps = 13/270 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DA+I S KLMLR G I + + GIYSW+P+G K+L  V AI+REE
Sbjct: 1   MRASQFFISTLKEAPADADIVSQKLMLRAGFIRKAAAGIYSWMPMGLKSLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A LW E+GR+D+ G+EMLR  DR+++  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAIEVIMPIVQPAGLWQETGRWDTMGEEMLRFKDRHERDFVIQPTSEEVVTDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + + +  SY+ M+ +
Sbjct: 121 DLKSYRALPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSADAAGVSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    + A++G IGGD SHEF V+A TGE  +    D          +D+ 
Sbjct: 181 YCKIFDRIGLTYRAVAADTGAIGGDRSHEFQVIAATGEDAIIYCPD----------SDYA 230

Query: 241 DIISLNSIVE---QWTAPYAATSDVHNEKL 267
             I L   V    +  AP AA   V+  K+
Sbjct: 231 ANIELAEAVAPAGERPAPGAAMEKVYTPKV 260



 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 114/189 (60%), Gaps = 9/189 (4%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K V A  RGIEVGH+FY GTKYS  M+ATF   DGK  + 
Sbjct: 379 PEPIVADIRNVVAGDPSPDGKGVLAIERGIEVGHVFYLGTKYSQAMNATFLDEDGKPKFF 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC--RDACEKIYA 370
           +MG YGIG  R++ A IE + D KGIIWPD++APF + L  +  +D+    + A +++YA
Sbjct: 439 EMGCYGIGVTRILGAAIEQNFDAKGIIWPDAIAPFTVVLCPV-GYDRSAEVKAAADQLYA 497

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIR 426
            L   G DV  DD GE+ G+ FA  +L+G P +V +G + + + KVE +HR     TG+ 
Sbjct: 498 ELVANGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKEGKVEYQHRRDSEATGMA 557

Query: 427 EDMSLEEVI 435
            D  LE V+
Sbjct: 558 VDAILEHVL 566


>gi|119899055|ref|YP_934268.1| prolyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|152074747|sp|A1K976|SYP_AZOSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119671468|emb|CAL95381.1| unnamed protein product [Azoarcus sp. BH72]
          Length = 581

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/260 (50%), Positives = 173/260 (66%), Gaps = 6/260 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+  L+E P DAE+ S KLMLR GMI + + GIY++LP+G K++  V  IIREE
Sbjct: 1   MRARQFFISTLKEAPADAEVVSQKLMLRAGMIRKVAAGIYNYLPMGLKSIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q ++LW E+GR+D  G EMLR  DR+++     PT EEV+TDI R 
Sbjct: 61  MNRAGALELTMPLVQPSELWQETGRWDKMGPEMLRFKDRHERDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ M+ +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSAEAAGESYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE   V+C          + N + 
Sbjct: 181 YSRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYCPDSSY-----AANIEL 235

Query: 240 DDIISLNSIVEQWTAPYAAT 259
            + +SL       +AP A T
Sbjct: 236 AEALSLLPARAGASAPLAKT 255



 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 108/192 (56%), Gaps = 6/192 (3%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   A  RGIEVGH+FY GTKYS  M+ATF   DGK  + +MG 
Sbjct: 393 VADIRNVVEGDPSPDGKGKLAIQRGIEVGHVFYLGTKYSKAMNATFLDVDGKPKHFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R++ A IE +HD +GIIWP S+APF++ +  +  +  +  RD  +K+Y  L   
Sbjct: 453 YGIGVTRILGAAIEQNHDERGIIWPASIAPFEVVICPVGWSKSEAVRDEAQKLYDALVAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P +V +G + + +   E + R       +++ E+ 
Sbjct: 513 GVDVILDDRDERPGVMFADWELIGVPHRVTIGDRGLKEGVAEYQGRRDPEASRVAVAEI- 571

Query: 436 NYASHRFSNNRP 447
             A H  S  RP
Sbjct: 572 --APHLISRLRP 581


>gi|33152900|ref|NP_874253.1| prolyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|81836009|sp|Q7VKI5|SYP_HAEDU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33149125|gb|AAP96642.1| prolyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 571

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVISHQLMLRAGMIRPTAAGLYNWLPTGVKILKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ES R++ YG E+LR ADR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEILMPVVQPAELWQESSRWEQYGPELLRFADRGKRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  TPE  + +Y  M+  
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTPESLQQTYEVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    ++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YHRIFTRLGLDFRTVQADTGSIGGSASHEFQVLASSGEDDIVFSTE 226



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 4/184 (2%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N  + D  P+ + +    RGIEVGHIF  G KYS  M+AT +G DGK   + MG YG
Sbjct: 384 DLRNVVVGDPSPDGRGILLIKRGIEVGHIFQLGQKYSAAMNATVQGEDGKPLVMTMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKVG 376
           IG  RVVAA IE  HD +GIIWP D +APF ++++ +         A  E++Y  L   G
Sbjct: 444 IGVTRVVAAAIEQHHDERGIIWPTDEIAPFTVAIVPMNMFKSASVQAFAEQLYTDLMAQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G  FA  +L+G P  +++G K + + +VE K+R TG +  ++ ++++ 
Sbjct: 504 VDVILDDRKERPGVMFADMELIGVPHMIVIGEKNLENGEVEYKNRRTGEKTMIAKDQLLA 563

Query: 437 YASH 440
           Y + 
Sbjct: 564 YLAQ 567


>gi|298528346|ref|ZP_07015750.1| prolyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511998|gb|EFI35900.1| prolyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 577

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/238 (52%), Positives = 166/238 (69%), Gaps = 1/238 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P +AE+ SHKLMLR GMI + + GIY++LP G +AL  ++ +IR E
Sbjct: 1   MRWSRYFMPTLKEEPAEAEVVSHKLMLRAGMIRKLTAGIYTYLPAGWRALQKISEVIRGE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  AIE+ +P +Q  DLW E+GR+++YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRFYAIELLMPAVQPGDLWKETGRWEAYGKELLRFRDRHDRDYCIGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M  +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDEAGAAQSYEWMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y+ IF +LGL+   + A+SG IGG +S EF+VLADTGE  V  +    DF    E  +
Sbjct: 181 YVSIFEKLGLQFRGVEADSGAIGGSVSQEFMVLADTGE-DVIATCTHCDFAANLEKAE 237



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 97/154 (62%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A +    G +  + MG YGIG  RV+AA IE +HD  GII
Sbjct: 403 KGIEVGHIFMLGAKYSQSMNAAYLDEHGAEKPLIMGCYGIGVGRVLAACIEQNHDENGII 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +  ++APF++++I +   D++ R+  E +Y  L     DV  DD  E+ G +F   DL+G
Sbjct: 463 FTPAIAPFEVTIIALNPKDEMVRNHSESLYNELCSQNVDVLLDDRDERPGFKFKDCDLVG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            PLQVIVG+K + +  +E+K R +G R ++ LE+
Sbjct: 523 SPLQVIVGAKGIKNGVLEVKERHSGHRHELPLED 556


>gi|300715419|ref|YP_003740222.1| Prolyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299061255|emb|CAX58364.1| Prolyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 572

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNVFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHASQESLQATYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSQSFKRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSTE 226



 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           Q   P     D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG+
Sbjct: 376 QRDLPLPRVEDIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGR 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEK 367
           +  + MG YGIG  R+VAA IE +HD +GIIWP ++APF+++++ +  H     ++  E+
Sbjct: 436 NQILTMGCYGIGITRIVAASIEQNHDERGIIWPAALAPFQVAILPMNMHKSFRVKELAEE 495

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA+L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K R  G + 
Sbjct: 496 LYAQLRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEVEYKSRREGEKR 555

Query: 428 DMSLEEVINY 437
            +   E++++
Sbjct: 556 MIKTGEILDF 565


>gi|117925064|ref|YP_865681.1| prolyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|152112926|sp|A0L8I2|SYP_MAGSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117608820|gb|ABK44275.1| prolyl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 576

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/218 (55%), Positives = 160/218 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A++ SHKLMLR G+I Q   GIY+WLP+G K L  V  I+R+E
Sbjct: 1   MRFSQTLIPTLKEEPSEAQVISHKLMLRAGLIRQLGAGIYTWLPMGLKVLRKVETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P++Q A+LW ESGR+  YGKE+LR+ DR++++  YGPTHEEV++D+ R 
Sbjct: 61  MDRAGAQEVLMPSIQPAELWEESGRWKMYGKELLRITDRHNRSFCYGPTHEEVISDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSFD+       SY  MF +
Sbjct: 121 EIHSYKQLPANFYQIQTKFRDEVRPRFGIMRGREFLMKDAYSFDIDEAALDKSYRLMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF+RL LK  P+ A++G IGG  SHEF VLA +GE
Sbjct: 181 YNKIFNRLDLKFRPVEADTGAIGGASSHEFHVLAQSGE 218



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 108/195 (55%), Gaps = 3/195 (1%)

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSAT 301
           L  +  Q   P     D+ N +  D  P     S   +RGIEVGH+F  G KYS  M   
Sbjct: 370 LTGVNWQRDLPKPEFVDLRNVEEGDGCPRCGPGSMELSRGIEVGHVFKLGYKYSEAMGVK 429

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               DGK+  + MG YGIG  R+VAA IE +HD  GIIWP ++APF++ ++ +  ++   
Sbjct: 430 VLDEDGKEKPLIMGCYGIGVSRIVAAAIEQNHDENGIIWPLAIAPFEVEVVVMNPNESDA 489

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E+I A+L     +V  DD  E+ GS+F  ADLLG P +V+VG +   +   E+K+R
Sbjct: 490 MEKAEEITAQLQAGQLEVLLDDRDERAGSKFKDADLLGAPYRVLVGGRAFKEGVCEVKNR 549

Query: 422 LTGIREDMSLEEVIN 436
            +G+ E + +E V+ 
Sbjct: 550 RSGVVEKIPVESVVE 564


>gi|183597570|ref|ZP_02959063.1| hypothetical protein PROSTU_00851 [Providencia stuartii ATCC 25827]
 gi|188023065|gb|EDU61105.1| hypothetical protein PROSTU_00851 [Providencia stuartii ATCC 25827]
          Length = 575

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/303 (44%), Positives = 186/303 (61%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G+IE+S+P +Q ADLW ESGR++ YG E+LR ADR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGSIEVSLPVVQPADLWQESGRWEQYGPELLRFADRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGIMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+G     ++A++G IGG  SHEF VLA +GE  +  S            +DF 
Sbjct: 181 YSKIFTRIGFDFRAVQADTGSIGGSASHEFQVLAQSGEDDIVFST----------GSDFA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L   +   T   A T ++   +L D+   N +  A  +E         ++ LP+  
Sbjct: 231 ANIELAEAITPLTPRSAPTEEM---RLVDT--PNAKTIAELVE---------QFGLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 3/190 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A+ +  +G +  V MG 
Sbjct: 384 TFDLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKASVQNEEGHNQIVTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  R+VAA IE SHD +GIIWPD++APF ++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRIVAAAIEQSHDERGIIWPDAIAPFHVAILPMNMHKSYRVKEVAEKLYADLKAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G  FA  +L+G P  +++G + + +++VE K R    +  + L+ V+
Sbjct: 504 GIDVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDNNQVEYKARRNDEKALIGLDNVV 563

Query: 436 NYASHRFSNN 445
           ++   + +N 
Sbjct: 564 SFLKEKLANT 573


>gi|262376731|ref|ZP_06069959.1| prolyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262308441|gb|EEY89576.1| prolyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 572

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G++++ +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MDKVGSLQVYMPVTQPASLWEESGRYVQYGPELLRFNDRHGNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPANFYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQQTYDDMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YCKIFTRLGLNFRPVQADTGSIGGSGSHEFHVLASSGEDDIAFSTE 226



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 3/185 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A +    D+ N    D  P+ K      RGIEVGHIF  G KYS  +     G DGK   
Sbjct: 383 AQFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGQKYSEALGCKVLGEDGKPFT 442

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           V MG YGIG  RVVA+ IE + D KGIIWP ++APF+++++ + AH      +A E +YA
Sbjct: 443 VTMGCYGIGVTRVVASAIEQNFDEKGIIWPTAIAPFEVAIVPMNAHKSPRTMEAAEALYA 502

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R      ++S
Sbjct: 503 ELQAAGFDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRRDAESVNIS 562

Query: 431 LEEVI 435
            EE++
Sbjct: 563 KEELL 567


>gi|56459994|ref|YP_155275.1| prolyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81821672|sp|Q5QW31|SYP_IDILO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56179004|gb|AAV81726.1| Prolyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 567

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAEI SH+LMLR GMI + + G+Y+W P G + L  V  ++REE
Sbjct: 1   MRSSKYLLSTLKETPSDAEIVSHQLMLRAGMIRKVAAGLYTWTPTGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P +Q ADLW ESGR+D YG E+LR+ DRN +  + GPTHEE+++ + R 
Sbjct: 61  MEAINALEILMPMVQPADLWQESGRWDDYGPELLRIKDRNQRDFLLGPTHEEIISQLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDESLQKTYDDMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P+ A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCRIFERLGLDYRPVIADTGSIGGSHSHEFHVLASSGEDAIAFS 224



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 3/185 (1%)

Query: 261 DVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P  + K   ARGIEVGHIF  G KYS  M        GK   + MG YG
Sbjct: 383 DIRNVVAGDPSPCGQGKVKIARGIEVGHIFQLGKKYSDAMKVGVLSESGKHETLTMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           IG  R+VAA IE ++D +GI WP+++APF++ ++ +  H     ++A EK+Y  L   G 
Sbjct: 443 IGVSRIVAAAIEQNNDERGICWPEALAPFQVVIVPMNMHKSARVQEAAEKLYTDLKAQGI 502

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV +DD  E+ G  F   +L+G P QV+VG + + +++VE + R  G ++ ++L++ I++
Sbjct: 503 DVLFDDRKERPGVMFTDMELIGIPHQVVVGERNLDENQVEYQSRKGGEKQKINLDDCISF 562

Query: 438 ASHRF 442
              + 
Sbjct: 563 IQQQL 567


>gi|329298700|ref|ZP_08256036.1| prolyl-tRNA synthetase [Plautia stali symbiont]
          Length = 572

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 163/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGIRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWEESGRWEQYGPELLRIKDRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNVYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSGSHEFQVLAQSGEDDVIFSSE 226



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  +
Sbjct: 380 PETRVEDIRNVVEGDPSPDGKGMLMIKRGIEVGHIFQLGTKYSDAMKAAVQGEDGRNQIM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +  H     ++  E++Y  
Sbjct: 440 TMGCYGIGITRVVAAAIEQNHDERGIIWPAALAPFEVAILPMNMHKSFRVKELAEQLYNE 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E K R    ++ +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKARAASEKQMIKQ 559

Query: 432 EEVINYASHRFS 443
            +++++ S   +
Sbjct: 560 HDIVDFLSRALN 571


>gi|161510954|ref|YP_089255.2| prolyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|114152209|sp|Q65QU0|SYP_MANSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 571

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSKYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPSGIRVLEKVKNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVLMPVVQPAELWQESGRWEQYGLELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTKESLQATYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 111/182 (60%), Gaps = 4/182 (2%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+AT +G DGK   + MG Y
Sbjct: 383 ADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGQKYSEAMNATVQGEDGKPLVMTMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKV 375
           GIG  RVVA+ IE  HD +GIIWP D++APF ++++ +  H      A  E++Y  L   
Sbjct: 443 GIGVTRVVASAIEQHHDERGIIWPSDAIAPFTVAIVPMNMHKSESVQAYAEELYQTLLAQ 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G  FA  +L+G P  VI+G K + + ++E K+R T  ++ ++ ++++
Sbjct: 503 GVEVIFDDRKERPGVMFADMELIGVPHMVIIGEKNLENGEIEYKNRRTSEKQMIAKDQLL 562

Query: 436 NY 437
           ++
Sbjct: 563 DF 564


>gi|167856063|ref|ZP_02478806.1| prolyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|219871797|ref|YP_002476172.1| prolyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|254782903|sp|B8F7C2|SYP_HAEPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167852812|gb|EDS24083.1| prolyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|219692001|gb|ACL33224.1| prolyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 571

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPLASGMYNWLPTGLRVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q ADLWVES R++ YG E+LR  DR D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGALEVEMPVVQPADLWVESERWEDYGPELLRFKDRGDRPFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL   P+ A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFTRLGLDFRPVAADTGSIGGSASHEFQVLAQSGEDDVVFSTE 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 114/189 (60%), Gaps = 4/189 (2%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG+   + MG Y
Sbjct: 383 ADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRPQTMIMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           GIG  RVVAA IE  HD +GIIWP D++APF ++++ +  H  +  +   E +Y  L   
Sbjct: 443 GIGVTRVVAAAIEQHHDERGIIWPTDAIAPFTVAVVPMNMHKSESVQTFAEDLYKTLRSQ 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G  FA  +L+G P  +++G K + + ++E K+R TG ++ ++ ++++
Sbjct: 503 GVDVIFDDRKERPGVMFADMELIGVPHMLVIGEKNLENGEIEYKNRRTGEKQMIAKDQLL 562

Query: 436 NYASHRFSN 444
           ++   R + 
Sbjct: 563 DFLKGRINQ 571


>gi|330828282|ref|YP_004391234.1| Prolyl-tRNA synthetase, family II [Aeromonas veronii B565]
 gi|328803418|gb|AEB48617.1| Prolyl-tRNA synthetase, family II [Aeromonas veronii B565]
          Length = 574

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/218 (54%), Positives = 156/218 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEVVSHQLMLRAGMIRKLASGMYAWLPTGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAVEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITALVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +  E    +Y KM  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKESLVDTYEKMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y + F R+GL   P++A++G IGG  SHEF VLA++GE
Sbjct: 181 YCKAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGE 218



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 109/180 (60%), Gaps = 3/180 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P  + K +  RGIEVGHIF  GTKYS  M A+     GK   ++MG 
Sbjct: 386 VADLRNVVEGDPSPCGQGKLLLKRGIEVGHIFQLGTKYSEAMKASVLNEAGKSVTMEMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE ++D  GIIWPD++APF+++++ +  H  +   +  ++ YA L   
Sbjct: 446 YGIGVSRLVAAAIEQNNDQYGIIWPDAIAPFEVAIVPMNMHKSERVAEQAQQFYAELKAA 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G  FA  +LLG P  +++G + + +  VE K R TG ++++++ ++I
Sbjct: 506 GVDVLFDDRKERPGVMFADMELLGIPHAIVIGDRGLDNGVVEYKCRRTGEKQEVAISDII 565


>gi|254517451|ref|ZP_05129507.1| prolyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226911200|gb|EEH96401.1| prolyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 570

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 126/225 (56%), Positives = 159/225 (70%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + GIY+++PLG K L NV  I+REE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMASGIYNYMPLGLKVLKNVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +Q A+LW ESGR+D YG E++RL DRN++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASAVQPAELWQESGRWDVYGAELIRLKDRNNREFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   EG   SYNKM  +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDKDQEGLDVSYNKMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y++IF+R G+ + P+ A+SG IGG  S EF+V ++ GE   VFC+
Sbjct: 181 YIKIFNRCGIDAKPVEADSGAIGGSNSAEFMVRSEVGEDDVVFCT 225



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RG EVGHIF  GTKYS  M+A F   +GK+    MG YGIG  R +A++IE  +D  GI
Sbjct: 401 SRGTEVGHIFKLGTKYSEAMNANFIDENGKEKPFIMGCYGIGVTRTMASIIEQHNDENGI 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAP+ +++I +   D+       +IY  L  +G D   DD  E+ G +F  +DL+
Sbjct: 461 VWPLSVAPYHVNIIPVNIKDEEQMKIANEIYEDLKSIGVDAILDDRNERAGVKFKDSDLM 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P+++ VG K V D +VE K R + + E++ +EE ++     F  N+
Sbjct: 521 GIPMRITVGKKIV-DGEVEFKLRTSDM-ENIKIEEAVDRVREEFKKNK 566


>gi|288940948|ref|YP_003443188.1| prolyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896320|gb|ADC62156.1| prolyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 572

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  ++E P DAEIASH+LMLR G+I + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRTSEFPLQTIKETPADAEIASHRLMLRAGLIRKLAAGLYTWLPLGLRVLRRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+S+P +Q A+LW ESGR++ YG E+LR  DR+ +   +GPTHEE++T++ R+
Sbjct: 61  MDRAGALEVSMPAVQPAELWQESGRWEQYGPELLRFKDRHQREFCFGPTHEEIITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L       +Y +M  +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDASLAETYQRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL   P+ A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCRIFTRCGLDFRPVSADTGSIGGSASHEFHVLASSGEDAIAFS 224



 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +     ARGIEVGHIF  G KYS  M AT  G DGK   +
Sbjct: 380 PLPEVADLRNVVEGDPSPDGQGTLTIARGIEVGHIFQLGRKYSEAMKATVLGEDGKATVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  RVVAA IE  HD +GI WP  +APF+++L+ +K       R+A EK+YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQHHDERGICWPAPIAPFEVALLPMKLGKSYRVREATEKLYAE 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD   + G  FA  +L+G P +++VG K + D +VE K R     + + +
Sbjct: 500 LQAAGIDVLLDDRDARPGFMFADMELIGIPHRIVVGDKGLDDGQVEYKGRADAEMQLIPI 559

Query: 432 EEVINYASHRF 442
           + ++ +   R 
Sbjct: 560 DTIVEFVRERL 570


>gi|295696152|ref|YP_003589390.1| prolyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295411754|gb|ADG06246.1| prolyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 567

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/225 (54%), Positives = 165/225 (73%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+  L+E P +AE+ SH+LMLR GMI Q   G+YS+LPLG + L  + AI+REE
Sbjct: 1   MRQSHFFVQTLREVPAEAEVPSHRLMLRAGMIRQVVSGVYSYLPLGYRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A LW ESGR+D YGKE+LR  DR+ + ++ GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLLPAVQPASLWQESGRWDDYGKELLRFEDRHQRMLVLGPTHEEVITDLVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T YQIQ KFRDE+RPRFGVMR+REF+MKDAYSFD+  EG   SY  M+ +
Sbjct: 121 EVRSYRQLPMTLYQIQTKFRDEVRPRFGVMRAREFIMKDAYSFDVDEEGLDRSYRAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCS 224
           Y +IF R GL+   ++A+ G IGG+  SHEF+VL++ GE  +   
Sbjct: 181 YEQIFRRCGLEFRVVQADPGAIGGEGGSHEFMVLSEVGEDTILVC 225



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GTKYS  +SA+F    G    V MG YGIG  R++AA +E  HD KGI+
Sbjct: 403 RGIEVGHVFKLGTKYSEALSASFLDERGVQRPVIMGCYGIGVSRLIAAAVEQHHDDKGIM 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  +APF + ++ +   D   RDA E++  RL   G +V  DD  E+ G +F  ADL+G
Sbjct: 463 WPMPIAPFHVHVLPVNLKDAAQRDAAEQLCTRLEDAGIEVLLDDRDERPGVKFNDADLMG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            P+Q+IVG K +S+  VE+K R TG    +S +E +  A
Sbjct: 523 IPIQLIVG-KRISEGLVEMKRRKTGEVTLLSPDEAVRAA 560


>gi|52308170|gb|AAU38670.1| ProS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 589

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 19  MRTSKYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPSGIRVLEKVKNIIREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 79  MNKSGAIEVLMPVVQPAELWQESGRWEQYGLELLRFNDRGNRDFVLGPTHEEVITDLVRR 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 139 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTKESLQATYDVMYQT 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 199 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 244



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 111/182 (60%), Gaps = 4/182 (2%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+AT +G DGK   + MG Y
Sbjct: 401 ADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGQKYSEAMNATVQGEDGKPLVMTMGCY 460

Query: 318 GIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKV 375
           GIG  RVVA+ IE  HD +GIIWP D++APF ++++ +  H      A  E++Y  L   
Sbjct: 461 GIGVTRVVASAIEQHHDERGIIWPSDAIAPFTVAIVPMNMHKSESVQAYAEELYQTLLAQ 520

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G  FA  +L+G P  VI+G K + + ++E K+R T  ++ ++ ++++
Sbjct: 521 GVEVIFDDRKERPGVMFADMELIGVPHMVIIGEKNLENGEIEYKNRRTSEKQMIAKDQLL 580

Query: 436 NY 437
           ++
Sbjct: 581 DF 582


>gi|237807601|ref|YP_002892041.1| prolyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259511628|sp|C4LBX6|SYP_TOLAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|237499862|gb|ACQ92455.1| prolyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 574

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/218 (55%), Positives = 156/218 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRTSQYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLHKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+S+P +Q A+LW ESGR++ YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNKAGAIEVSMPVVQPAELWQESGRWEQYGPELCRLTDRHNRPFVLGPTHEEVVTALVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSF +  E    +Y KM  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFTMKDAYSFHMNKESLIETYGKMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R+GL   P+ A++G IGG  SHEF VLA++GE
Sbjct: 181 YCNIFSRMGLDFRPVLADTGSIGGTGSHEFHVLANSGE 218



 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M+AT     GK   ++MG YGIG  RVVAA IE + D +GII
Sbjct: 409 RGIEVGHIFQLGTKYSEAMNATVLNEAGKATVMEMGCYGIGVTRVVAAAIEQNFDDRGII 468

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           W DS+APF++ +I +  H  +  ++  E+ Y  L   G +V  DD  E+ G  FA  +L+
Sbjct: 469 WTDSIAPFQVVIIPMNMHKSERVQELAERFYNELQAAGVEVLLDDRKERPGVMFADMELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  +++G + + +  VE K+R +G + +++++E+I
Sbjct: 529 GIPHSIVIGDRSIDNGVVEYKYRRSGDKTEVAIDEII 565


>gi|148826625|ref|YP_001291378.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166980127|sp|A5UDZ4|SYP_HAEIE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148716785|gb|ABQ98995.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 572

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/275 (48%), Positives = 178/275 (64%), Gaps = 10/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPE 273
           + +++     +  AP A  +  D  N K  + L E
Sbjct: 237 EAVAIG----ERQAPTAEMTLVDTPNAKTINELVE 267



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSESVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R +G +E +S +++++  + +  N
Sbjct: 525 IGVPHMVVIGEKNLDNGEIEYKNRRSGEKEMISKDKLLSVLNEKLGN 571


>gi|268590504|ref|ZP_06124725.1| hypothetical protein PROVRETT_06701 [Providencia rettgeri DSM 1131]
 gi|291314090|gb|EFE54543.1| proline--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 572

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+G     ++A++G IGG  SHEF VLA  GE  V  S +
Sbjct: 181 YSKIFTRIGFDFRAVQADTGSIGGSASHEFQVLAKNGEDDVIFSTE 226



 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 112/180 (62%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M A+ +  DG +  V MG YG
Sbjct: 386 DLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKASVQNEDGHNQIVTMGCYG 445

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           IG  R+VAA IE SHD +GIIWPD++APF+++++ +  H     ++  EK+YA L   G 
Sbjct: 446 IGVTRIVAAAIEQSHDDRGIIWPDAIAPFQVAILPMNMHKSYRVKEVAEKLYADLKANGI 505

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV +DD  E+ G  FA  +L+G P  +++G + + ++++E K R +  +E + LE VI++
Sbjct: 506 DVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDNNQIEYKSRRSDDKELVGLENVISF 565


>gi|292489201|ref|YP_003532088.1| prolyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292898564|ref|YP_003537933.1| prolyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291198412|emb|CBJ45519.1| prolyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291554635|emb|CBA22316.1| Prolyl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 572

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M  +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSSE 226



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E +Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEALYHQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  ++VG + +   +VE K R  G +  +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVVGERHLDSEEVEYKSRRAGEKRMIKT 559

Query: 432 EEVINY 437
            E+I++
Sbjct: 560 NEIIDF 565


>gi|73542636|ref|YP_297156.1| prolyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|114152236|sp|Q46X21|SYP_RALEJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72120049|gb|AAZ62312.1| Prolyl-tRNA synthetase, bacterial [Ralstonia eutropha JMP134]
          Length = 573

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE   V+C
Sbjct: 181 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 381 PEPIVADLRNVVAGDASPDGKGTLEICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 440

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D +GIIWP ++APF++ +  +     +  +   ++I+A 
Sbjct: 441 QMGCYGIGVTRILGAAIEQNFDERGIIWPAAIAPFEVVVCPVGYDRSEAVKAEADRIHAE 500

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R       +++
Sbjct: 501 LLAAGVDVIIDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGRRDAQATQVAV 560

Query: 432 EEVINY 437
            +V+ +
Sbjct: 561 ADVVGH 566


>gi|312173361|emb|CBX81615.1| Prolyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 572

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M  +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +  S +
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSSE 226



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E +Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEALYHQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  ++VG + +   +VE K R  G +  +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVVGERHLDSEEVEYKSRRAGEKRMIKT 559

Query: 432 EEVINY 437
            E+I++
Sbjct: 560 NEIIDF 565


>gi|293390782|ref|ZP_06635116.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951316|gb|EFE01435.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 571

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 159/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLLSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V  S +
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFSTE 226



 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+AT +G DG+   V MG 
Sbjct: 382 VADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSQAMNATVQGEDGRPMVVTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD +GIIWP D++APF ++++ +  +  +  +   E +Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHHDERGIIWPSDAIAPFTVAIVPMNMYKSESVQQFAEDLYRTLQA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++  ++
Sbjct: 502 QGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKAQL 561

Query: 435 INY 437
           +++
Sbjct: 562 LDF 564


>gi|261867437|ref|YP_003255359.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412769|gb|ACX82140.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 571

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 159/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLLSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V  S +
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFSTE 226



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 112/182 (61%), Gaps = 4/182 (2%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+AT +G DG+   V MG Y
Sbjct: 383 ADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSQTMNATVQGEDGRPMVVTMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           GIG  RVVAA IE  HD +GIIWP D++APF ++++ +  +  +  +   E +Y  L   
Sbjct: 443 GIGVTRVVAAAIEQHHDERGIIWPSDAIAPFSVAIVPMNMYKSESVQQFAEDLYRTLQAQ 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++  +++
Sbjct: 503 GVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKAQLL 562

Query: 436 NY 437
           ++
Sbjct: 563 DF 564


>gi|308048689|ref|YP_003912255.1| prolyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307630879|gb|ADN75181.1| prolyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 570

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  ++E P DAEI SH+LM+R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQTLISTMKETPSDAEIVSHQLMMRAGMIRKLAAGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E  +P +Q ADLW E+GR+D  G EM RL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGAVETLMPVVQPADLWQETGRWDDMGAEMARLKDRHDRDFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFGVMR+REFLMKDAYSF L  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPINLYQIQTKFRDERRPRFGVMRAREFLMKDAYSFHLDQETMDETYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RI  R+GL   P+ A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YCRILERMGLAYRPVLADTGAIGGSHSHEFQVLAQSGEDAIAYSTE 226



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 108/166 (65%), Gaps = 1/166 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  GTKYS  M+AT    +GK   + MG YG+G  R+VAA IE +HD +GI
Sbjct: 405 ARGIEVGHIFQLGTKYSESMNATVLDPNGKATPLIMGCYGVGVSRIVAAAIEQNHDDRGI 464

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWPD++AP++++++ +  H      +  EK+YA L+  G +V +DD  E+ G  FA  +L
Sbjct: 465 IWPDAIAPYQVAILPMNMHKSHRVAELAEKLYAELTAAGIEVLFDDRKERPGVMFADHEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P  +++G + + D  VE K R TG + ++++++V+ +   +F+
Sbjct: 525 IGIPHTIVIGDRGIDDGNVEYKVRKTGEKSELAIDQVVEFFKGKFA 570


>gi|148827919|ref|YP_001292672.1| prolyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166980128|sp|A5UHN3|SYP_HAEIG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148719161|gb|ABR00289.1| prolyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 572

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/275 (48%), Positives = 176/275 (64%), Gaps = 10/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPE 273
           + I++     +  AP A     D  N K    L E
Sbjct: 237 EAIAIG----ERQAPTAEMCLVDTPNAKTIAELVE 267



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGIPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|85059898|ref|YP_455600.1| prolyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|114152253|sp|Q2NRN0|SYP_SODGM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84780418|dbj|BAE75195.1| prolyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 574

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+YSWLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKEVPADAEVVSHQLMLRAGMIRKLASGLYSWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+S+P +Q ADLW ESGR+  YG E+LR  DR  +A + GPTHEEV+TD+ R+
Sbjct: 61  MDNAGAIEVSMPVVQPADLWQESGRWVQYGPELLRFTDRGARAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTSQASLQATYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL+   ++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSAIFTRMGLEFRAVQADTGSIGGSASHEFQVLAGSGEDDIVFS 224



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M AT +G DG++  + MG YGIG  RVV A IE +HD +GI+
Sbjct: 407 RGIEVGHIFQLGTKYSEAMKATVQGEDGRNQTLTMGCYGIGITRVVVAAIEQNHDDRGIL 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP+++APF ++++ +  H     ++  E +Y +L   G DV  DD  E+ G  FA  +L+
Sbjct: 467 WPETLAPFNVAILPMNMHKSFRVKEVAEDLYQQLQARGIDVLLDDRKERPGVMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P Q+++G + +   ++E K+R +G +  + L  ++++
Sbjct: 527 GVPHQLVIGDRNLDTEEIEYKNRRSGEKRMIKLSAIVDF 565


>gi|328954064|ref|YP_004371398.1| Prolyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454388|gb|AEB10217.1| Prolyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 573

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 122/221 (55%), Positives = 156/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK  LP L+E P +AE  SH+L+LR GMI + + GIY +LPLG   L  V AI+REE
Sbjct: 1   MYYSKMLLPTLKETPAEAETVSHQLLLRAGMIRKLTSGIYDYLPLGLMVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q A+LW ESGR+  YGKE+LR  DR+D+   +GPTHEEV+TD+ R 
Sbjct: 61  MNCAGAQELLLPAVQPAELWQESGRWQIYGKELLRFQDRHDRDYCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFG++R REF+MKD YSFD+   G+  +Y  M+ +
Sbjct: 121 EVHSYRQLPLNLYQIQTKFRDEIRPRFGLIRGREFIMKDGYSFDIDEAGADQTYRAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GL+   + A+SGPIGG  SHEF+VLA+TGE  V
Sbjct: 181 YTRIFSRCGLRFKTVEADSGPIGGSFSHEFMVLAETGEDVV 221



 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 95/158 (60%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G KYS  + ATF    G++ Y+ MG YGIG  R+VAA IE +HD  GII
Sbjct: 403 RGIEVGHVFKLGYKYSKALKATFLDDQGREQYMFMGCYGIGVSRIVAAAIEQNHDLDGII 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF++ L+ I A+D        ++Y  +   G +V +DD  E+ G +F   DLLG
Sbjct: 463 FPMPLAPFQVLLVPIAANDVDTMAVASRLYQEIRAAGIEVLFDDRNERPGIKFKDGDLLG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            P++V++G K ++    E++ R +   + + L  ++ Y
Sbjct: 523 IPVRVVLGPKTLAQGAAEVRQRRSRAVQLIPLASLVAY 560


>gi|237746898|ref|ZP_04577378.1| prolyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229378249|gb|EEO28340.1| prolyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 578

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  +  IIREE
Sbjct: 1   MRASQFFISTLKEAPADAEIISHKLMVRAGMIRRLGSGIYAYMPMGLRVIHKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E+LR+ DR+D+  I  PT EEV+TDI R+
Sbjct: 61  MNRAGAVELLMPLVQPAELWQETGRWQKYGPELLRVKDRHDRDFIIQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G K SY  MF +
Sbjct: 121 VIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVAGLKKSYQVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y++IF R GLK  P+ A++G IGG  SHEF V+ADTGE  +  S+D
Sbjct: 181 YIKIFTRFGLKFRPVAADNGAIGGSGSHEFHVIADTGEDALVYSRD 226



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 137/273 (50%), Gaps = 22/273 (8%)

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV---FCSKDFMDFPIPS 234
           F S   I H LG  S       GP+G     +  + AD   T +    C  +  D     
Sbjct: 321 FASESEIVHYLGCPS----GYLGPVGLSERTDIALYADHAVTVMSDFICGANEKDMHYTG 376

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGT 292
            N + D  + L S V          +D  N    D  P+ K   A  RGIEVGH+F  GT
Sbjct: 377 VNWERD--VPLPSTV----------ADFRNVVEGDPSPDGKGTLAIQRGIEVGHVFQLGT 424

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +YS  M AT+   +GK   +QMG YGIG  R++ A IE ++D +GIIWP S+APF++ L 
Sbjct: 425 RYSEDMHATYLDENGKPQLMQMGCYGIGVTRIMGAAIEQNNDERGIIWPVSIAPFEVVLC 484

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     ++ R+  +K+Y  L   G DV  DD GE+ G  F+  +L+G P ++++G + +
Sbjct: 485 PLGYDRSEMVRNTADKLYGTLKNAGLDVLMDDRGERPGVMFSDWELIGIPHRIVIGERGL 544

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + K+E + R       ++++++ N+   + ++
Sbjct: 545 KEGKLEYQGRRDKEATAVAIDDMANFIKDKLAS 577


>gi|88798124|ref|ZP_01113711.1| prolyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88779321|gb|EAR10509.1| prolyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 573

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA I SHKLMLR G++ + + G+Y+WLP G++ L+ +  IIREE
Sbjct: 1   MRASRYLLATVKETPADAVIVSHKLMLRAGLVRKLASGLYNWLPTGRRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +PT+Q A+LW ESGR D    +ML++ DR+ +  +YGPTHEEV+TDI R+
Sbjct: 61  LDRSGAQEVLMPTIQPAELWEESGRIDKMEGQMLKMQDRHQRDFVYGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREF+MKD YSF +  E     Y+ M+ +
Sbjct: 121 ELTSYKQLPMNFYQIQNKFRDEFRPRFGVMRSREFVMKDGYSFHVDQECLNKEYDNMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P+ A++G +GG  SHEF VLAD+GE  +  S D
Sbjct: 181 YCRIFDRLGLDYRPVLADTGAMGGSASHEFQVLADSGEDYIVYSTD 226



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G  YS  + A     +GK   +QMG YGIG  R+VAA IE +HD  GII
Sbjct: 407 KGIEVGHIFQLGDTYSKSLKAEVLDQNGKSQAMQMGCYGIGVTRIVAAAIEQNHDENGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVAD 396
           WPD++APF + ++ + AH      +  EK+YA L   G DV  DD  ++   G +FA  +
Sbjct: 467 WPDAIAPFHVGIVPLNAHKSPEVMEVAEKLYADLQAAGYDVLLDDRDKKTSPGVKFADME 526

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           L+G P +++V  + ++D KVE K R    +E+++L +++ +   +
Sbjct: 527 LVGVPHRIVVSDRGLADGKVEYKARRASDKEEIALTDILAHIQQQ 571


>gi|237749052|ref|ZP_04579532.1| prolyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229380414|gb|EEO30505.1| prolyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 587

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+RTGMI +   GIY+++P+G + +  +  IIREE
Sbjct: 9   MRASQFFISTLKEAPADAEIISHKLMVRTGMIRRLGSGIYAYMPMGLRVIHKIENIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E+LR+ DR+D+  I  PT EEV+TDI R+
Sbjct: 69  MNRAGAVELLMPLVQPAELWQETGRWQKYGPELLRIKDRHDRDFIIQPTSEEVITDIARN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  MF +
Sbjct: 129 VIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVDGLKKSYQIMFDA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y++IF R GLK  P+ A++G IGG  SHEF V+A+TGE  +  S++
Sbjct: 189 YVKIFTRFGLKFRPVAADNGAIGGSGSHEFHVIAETGEDALVYSRE 234



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 125/250 (50%), Gaps = 22/250 (8%)

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV---FCSKDFMDFPIPS 234
           F S   I H LG  +       GPIG +   +  + AD   T +    C  +  D     
Sbjct: 329 FASESEIIHHLGCPA----GYLGPIGLEKREDIALYADHAVTVMSDFICGANEKDMHFTG 384

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGT 292
            N + D  +  N             +D  N    D  P+ K   A  RGIEVGH+F  GT
Sbjct: 385 VNWERDLPLPEN------------IADFRNVVEGDPSPDGKGTLAIQRGIEVGHVFQLGT 432

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +YS  M+A++   +GK   +QMG YGIG  R+V A IE ++D KGIIWP S+APF++ L 
Sbjct: 433 RYSEDMNASYLDENGKPQLMQMGCYGIGVTRIVGAAIEQNNDDKGIIWPTSIAPFEVVLC 492

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  +   +++Y  L + G DV  DD GE+ G  F+  +L+G P ++++G + +
Sbjct: 493 PLGYDRSEAVKKTADELYESLKQSGIDVIMDDRGERPGVMFSDWELIGVPHRIVIGDRGL 552

Query: 412 SDSKVEIKHR 421
            D K+E + R
Sbjct: 553 KDGKLEYQGR 562


>gi|221133881|ref|ZP_03560186.1| prolyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 570

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 117/221 (52%), Positives = 163/221 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR+GM+ + + G+Y++LP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVVSHQLMLRSGMVRKVASGLYNYLPTGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEIQMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVVTALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REFLMKDAYSF L+ +  + +Y+KMF +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGIMRGREFLMKDAYSFHLSQDCLQTTYDKMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  +F R+GL+  P+ A++G IGG  SHEF VLAD+GE  +
Sbjct: 181 YCNVFERIGLEYRPVIADNGSIGGSGSHEFHVLADSGEDDI 221



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 95/159 (59%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M+       GK   + MG YGIG  R++AA IE +HD  GI 
Sbjct: 408 RGIEVGHIFQLGNKYSQAMNCGVLTETGKHETLTMGCYGIGVSRIMAAAIEQNHDKYGIK 467

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF I++I +  H     ++  EK+Y     +G +V +DD  E+ G  F   +L+
Sbjct: 468 WPDAIAPFTIAIIPMNMHKSHRIKEVAEKLYEECLALGVEVLFDDRKERPGVMFNDMELI 527

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + + + +VE K+R TG ++ +++ ++  +
Sbjct: 528 GVPHSIVIGERNLDNQEVEYKNRRTGEKKMLNIADLSEF 566


>gi|297568238|ref|YP_003689582.1| prolyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924153|gb|ADH84963.1| prolyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 576

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/225 (54%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR G I + + G+YS+LPLG  A+  V  I+REE
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRGGFIRKLTAGVYSYLPLGLAAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFKDRHQRESCLGPTHEEVITDLVRM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFDL   G++ +Y KM+ +
Sbjct: 121 NIHSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDGYSFDLDEAGAELTYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +
Sbjct: 181 YQRIFSRCGLAFRAVEADTGTIGGSFSHEFMVLAATGEDVVVICQ 225



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 93/145 (64%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  ++ATF    G+  +  MG +GIG  R VAA IE +HD  G+I
Sbjct: 402 RGIEVGHIFKLGTNYSEALNATFLDDQGQSRHFVMGCFGIGVSRTVAAAIEQNHDRDGMI 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF++ L+N+   D+V     E++Y  L+  G +V  DD  E+ GS+F  ADL+G
Sbjct: 462 FPLPIAPFQVILLNLTPKDEVISAEAERLYQALTADGIEVLLDDRDERPGSKFKDADLIG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
            P++++VG +F +D  +EI+ R  G
Sbjct: 522 IPIRLMVGKRFKNDGLLEIRTRADG 546


>gi|117919846|ref|YP_869038.1| prolyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|152016600|sp|A0KV13|SYP_SHESA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117612178|gb|ABK47632.1| prolyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 570

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS VG DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LSAVGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDVPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQIVDF 564


>gi|85711988|ref|ZP_01043042.1| Prolyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85694174|gb|EAQ32118.1| Prolyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 569

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+W P G + L  V  ++REE
Sbjct: 1   MRSSQYLLSTLKETPSDAEIVSHQLMLRAGMIRKVASGLYTWTPTGLRVLKKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEE+++++ R 
Sbjct: 61  MERINALEILMPMVQPADLWQESGRWEDYGPELLRIKDRHERDFLLGPTHEEIISELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMR+REF+MKDAYSF LT E  + +Y++M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHLTDESLQQAYDEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P+ A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCRIFQRLGLDFRPVIADTGSIGGHASHEFHVLAGSGEDAIAFS 224



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 101/194 (52%), Gaps = 3/194 (1%)

Query: 254 APYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A  +A  D+ N    D  P  +     ARGIEVGHIF  G KYS  M        GK   
Sbjct: 375 AEISAVEDIRNVVAGDPSPCGQGTLQIARGIEVGHIFQLGKKYSNAMKVGVLSETGKHET 434

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           + MG YGIG  RVVAA IE  HD +GI WP+ +APF+++++ +  H     +    ++Y 
Sbjct: 435 LTMGCYGIGVSRVVAAAIEQFHDDRGINWPNELAPFEVAIVPMNMHKSARVQKVANELYQ 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G DV +DD  E+ G  F   +L+G P Q+++G + + +  VE + R    ++ M 
Sbjct: 495 QLRDAGFDVLFDDRKERPGVMFTDMELIGVPHQIVIGERNLDEEMVEYQSRSDRDKQKMP 554

Query: 431 LEEVINYASHRFSN 444
           +  V+ + +    N
Sbjct: 555 INSVLEFLNQTLRN 568


>gi|113969687|ref|YP_733480.1| prolyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|123130574|sp|Q0HKJ4|SYP_SHESM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113884371|gb|ABI38423.1| prolyl-tRNA synthetase [Shewanella sp. MR-4]
          Length = 570

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDVPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQIVDF 564


>gi|16272670|ref|NP_438888.1| prolyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260579822|ref|ZP_05847652.1| prolyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174537|sp|P43830|SYP_HAEIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1573733|gb|AAC22388.1| prolyl-tRNA synthetase (proS) [Haemophilus influenzae Rd KW20]
 gi|260093106|gb|EEW77039.1| prolyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 572

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGVPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|114046916|ref|YP_737466.1| prolyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|122944801|sp|Q0HWU6|SYP_SHESR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113888358|gb|ABI42409.1| prolyl-tRNA synthetase [Shewanella sp. MR-7]
          Length = 570

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDVPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQIVDF 564


>gi|319775327|ref|YP_004137815.1| prolyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|319897767|ref|YP_004135964.1| prolyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|329122677|ref|ZP_08251255.1| proline--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317433273|emb|CBY81648.1| prolyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317449918|emb|CBY86130.1| prolyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327472551|gb|EGF17981.1| proline--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 572

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 VGVPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|145630468|ref|ZP_01786248.1| frataxin-like protein [Haemophilus influenzae R3021]
 gi|144983858|gb|EDJ91300.1| frataxin-like protein [Haemophilus influenzae R3021]
          Length = 572

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGVPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|315635289|ref|ZP_07890566.1| proline--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315476035|gb|EFU66790.1| proline--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 571

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSKYLLSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLQKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR +++ + GPT+EE +TD+ R 
Sbjct: 61  MNKSGAIEIKMPVVQPAELWQESGRWDQYGPELLRFTDRGERSFVIGPTNEEAITDLMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF +  E  + +Y  M+ +
Sbjct: 121 EVTSYRQLPLNLYHIQTKFRDEVRPRFGVMRSREFIMKDAYSFHMDKESLQQTYEVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V  S +
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFSTE 226



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+AT +G DG+   V MG 
Sbjct: 382 VADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSNAMNATVQGEDGRPTVVTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQVCRDA-CEKIYARLSK 374
           YGIG  RVVAA IE  HD +GIIWP D++APF ++++ +  H      A  E++Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHHDERGIIWPSDAMAPFTVAIVPMNMHKSESVQAFAEELYRTLLA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R +G ++ ++  ++
Sbjct: 502 QGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRSGEKQMIAKAQL 561

Query: 435 INY 437
           I++
Sbjct: 562 IDF 564


>gi|145634860|ref|ZP_01790568.1| prolyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268026|gb|EDK08022.1| prolyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 572

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R +G +E +S +++++  + +  N
Sbjct: 525 IGVPHMVVIGEKNLDNGEIEYKNRRSGEKEMISKDKLLSVLNEKLGN 571


>gi|145628390|ref|ZP_01784191.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145638474|ref|ZP_01794084.1| prolyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|144980165|gb|EDJ89824.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145272803|gb|EDK12710.1| prolyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309751606|gb|ADO81590.1| Prolyl-tRNA synthetase [Haemophilus influenzae R2866]
 gi|309973773|gb|ADO96974.1| Prolyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 572

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 176/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + I++     +  AP A     D  N K    L E 
Sbjct: 237 EAIAIG----ERQAPTAEMCLVDTPNAKTIAELVEQ 268



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGVPHMVVIGEKNLENGEIEYKNRRTGEKEMISKDQLLSVLNEKLGN 571


>gi|312111641|ref|YP_003989957.1| prolyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311216742|gb|ADP75346.1| prolyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 567

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAVELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERNFALGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYS 224



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  ++AT+   +G+   + MG YGIG  R+VAA+ E   D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEALNATYLDENGRSQTMIMGCYGIGVSRLVAAIAEQFADENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + LI   A  +  R   ++ Y +L + G +V +DD  E+ G +FA +DL+
Sbjct: 463 VWPVAVAPFHVHLITANAKSEEQRQLADEWYEKLRQAGLEVLYDDRPERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P++V VG K   +  VE+K R TG   ++ + E+I+
Sbjct: 523 GIPVRVTVG-KRAGEGVVEVKVRQTGESVEVPVHELID 559


>gi|254284280|ref|ZP_04959248.1| prolyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219680483|gb|EED36832.1| prolyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 564

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 122/221 (55%), Positives = 162/221 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR GMI + + GIY+W+PLG + L  V A++REE
Sbjct: 5   MRASQFPLFTLKETPSDAEIISHQLMLRAGMIRRIAAGIYTWMPLGLRVLRRVEAVVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+++P +Q A+LW ESGR++ YG E+ RL DR+D+    GPTHEEV++ + RS
Sbjct: 65  MNNAGALEITMPVVQPAELWQESGRWEQYGPELARLRDRHDREFCLGPTHEEVVSALARS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y +M  +
Sbjct: 125 EIKSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDQASQEETYWRMHDA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF+RL L   P+ A++G IGG+ SHEF VLAD+GE  +
Sbjct: 185 YSRIFNRLSLAFRPVEADTGSIGGNHSHEFHVLADSGEDAI 225



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 76/126 (60%), Gaps = 1/126 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGHIF  GTKYS  M A     +GK   + MG YGIG  R+VAA IE ++D  GI
Sbjct: 408 CRGIEVGHIFQLGTKYSEAMGAEVLDENGKSTAMAMGCYGIGITRIVAAAIEQNNDDNGI 467

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP S+APF ++L+ +     Q   DA E +Y+   + G DVF DD  ++ G +FA  +L
Sbjct: 468 IWPVSMAPFTVALVPLNMGKSQAVADATEDLYSACVEAGIDVFMDDRDQRPGVKFAEMEL 527

Query: 398 LGFPLQ 403
           +  P +
Sbjct: 528 IASPFE 533


>gi|240947869|ref|ZP_04752309.1| prolyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240297831|gb|EER48267.1| prolyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 571

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 131/277 (47%), Positives = 174/277 (62%), Gaps = 19/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  I+REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--------- 231
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF          
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVIFSTE-SDFAANIELAEAV 239

Query: 232 ------IPSEN---TDFDDIISLNSIVEQWTAPYAAT 259
                  P+ +    D  +  ++N +VEQ+  P   T
Sbjct: 240 AVGERQAPTADMQLVDTPNAKTINELVEQFNLPIEKT 276



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 112/186 (60%), Gaps = 4/186 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D  P+ K V    RGIEVGHIF  G KYS  M+AT +G DGK   + MG 
Sbjct: 382 TFDLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGKKYSEAMNATVQGEDGKPLVMTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSEKVQAFAEELYKTLKA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG ++ ++ E++
Sbjct: 502 QGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRTGEKQMIAKEQL 561

Query: 435 INYASH 440
           + + + 
Sbjct: 562 LAFLAE 567


>gi|301169449|emb|CBW29049.1| prolyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 572

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M+AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMNATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGVPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|145632080|ref|ZP_01787815.1| frataxin-like protein [Haemophilus influenzae 3655]
 gi|144986987|gb|EDJ93517.1| frataxin-like protein [Haemophilus influenzae 3655]
          Length = 572

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGIPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|120598308|ref|YP_962882.1| prolyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|152016601|sp|A1RI33|SYP_SHESW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120558401|gb|ABM24328.1| prolyl-tRNA synthetase [Shewanella sp. W3-18-1]
          Length = 571

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/243 (50%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPM 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQLVDF 564


>gi|331000280|ref|ZP_08323964.1| proline--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|329572446|gb|EGG54099.1| proline--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 582

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+   +E P DAEI S KLMLR GMI + + G+Y+++P+G ++L  +  I+REE
Sbjct: 1   MRAKQFFISTQKEAPADAEIVSQKLMLRAGMIRKLAAGVYNYMPMGLRSLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P +Q A+LW E+GR+  YG E+LR  DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAIELLMPIVQPAELWQETGRWQKYGSELLRFKDRHDRDFVLQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  FYQIQ KFRDE RPRFGVMR R+F+MKDAYSFD T E +  SY+KMF +
Sbjct: 121 EIKSWRQLPVNFYQIQTKFRDERRPRFGVMRGRDFVMKDAYSFDRTAEDAGKSYDKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF RLGL    +RA+SG IGG  S EF V+ADTGE   VFC
Sbjct: 181 YCRIFDRLGLVYRAVRADSGSIGGSRSQEFQVIADTGEDLIVFC 224



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 3/181 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+F+ G KYS PM+AT+   +GK   +QMG 
Sbjct: 393 VADIRNVVEGDVSPDGKGTLKMQRGIEVGHVFFLGDKYSAPMNATYLDENGKPQLLQMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R++ A IE  HD KGIIWPDS+APF + +  +     +  + A  ++Y RL + 
Sbjct: 453 YGIGISRLLGAAIEQGHDDKGIIWPDSIAPFTVVICPVGYDKSEEVQKASNELYGRLREA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA  +L+G P +V +G + + + +VE  HR     E++ + E+ 
Sbjct: 513 GIDVILDDRGLRPGVMFADWELIGVPHRVTIGDRGLKNGEVEYAHRGDLQNENVPVTEIA 572

Query: 436 N 436
           +
Sbjct: 573 D 573


>gi|313901629|ref|ZP_07835066.1| prolyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313468110|gb|EFR63587.1| prolyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 586

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+++P +AEIASH+LMLR G+I + + GIY WLPLG++A+  V  I+REE
Sbjct: 1   MRWTRLLIPTLRDDPAEAEIASHRLMLRAGLIRRVTAGIYEWLPLGRRAVVKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +Q A+LW E+GR+  YG+EM RL DR+ +    GPTHEE++TD+ R+
Sbjct: 61  MNRKGGLEVGLPIVQPAELWRETGRWAQYGEEMWRLKDRHGREYCLGPTHEEIITDLVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ K+RDE+RPRFGVMR+REF+MKDAYSFD+  EG + SY  M  +
Sbjct: 121 TVSSYRQLPLLLYQIQNKYRDEIRPRFGVMRAREFIMKDAYSFDVDAEGLERSYQAMDDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL   P+ A+ G IGG  +HEF+ LAD GE   V+C
Sbjct: 181 YRRIFSRCGLVFRPVAADPGAIGGSGTHEFMALADYGEALIVYC 224



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 99/158 (62%), Gaps = 2/158 (1%)

Query: 269 DSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D+ PE      +ARGIEVG IF   TKYS  +  TFK ADG++  + MG YGIG  R VA
Sbjct: 394 DACPECGTPMAAARGIEVGQIFKLWTKYSEALGCTFKDADGQERPMVMGCYGIGITRTVA 453

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           AVIE  HD KGIIWP SVAP+ + ++ +   +   R A E++Y +L + G +   DD  E
Sbjct: 454 AVIEQHHDEKGIIWPMSVAPYHVVVVPVNYAEPDQRQAAERVYGQLLEAGVEAVLDDRDE 513

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + G +F  ADL+GFPL+V VG + + + KVE+  R TG
Sbjct: 514 RPGVKFNDADLIGFPLRVTVGPRGLVEGKVEVVERATG 551


>gi|229845777|ref|ZP_04465889.1| prolyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810781|gb|EEP46498.1| prolyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 572

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  + AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAVKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGIPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|146293614|ref|YP_001184038.1| prolyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166980158|sp|A4Y8F6|SYP_SHEPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145565304|gb|ABP76239.1| prolyl-tRNA synthetase [Shewanella putrefaciens CN-32]
          Length = 571

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/243 (50%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPM 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQLVDF 564


>gi|319426918|gb|ADV54992.1| prolyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 571

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/243 (50%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNEAYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPM 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQLVDF 564


>gi|251793646|ref|YP_003008376.1| prolyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247535043|gb|ACS98289.1| hypothetical protein NT05HA_1971 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 571

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLFSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V  S +
Sbjct: 181 YSNIFSRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFSTE 226



 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 113/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+AT +G DG+   + MG 
Sbjct: 382 VADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSKAMNATVQGEDGRPMVLTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  ++  E +Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHHDERGIIWPCDEMAPFTVAIVPMNMHKSESVQEFAEDLYRTLLA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++ +++
Sbjct: 502 QGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKDQL 561

Query: 435 INY 437
           +++
Sbjct: 562 LDF 564


>gi|295399847|ref|ZP_06809828.1| prolyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978250|gb|EFG53847.1| prolyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 567

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAVELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYS 224



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  ++AT+   +G+   + MG YGIG  R+VAA+ E   D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEALNATYLDENGRSQTMIMGCYGIGVSRLVAAIAEQFADENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + LI   A  +  R   ++ Y +L + G +V +DD  E+ G +FA +DL+
Sbjct: 463 VWPVAVAPFHVHLITANAKSEEQRQLADEWYEKLRQAGLEVLYDDRPERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P++V VG K   +  VE+K R TG   ++ + E+I+
Sbjct: 523 GIPVRVTVG-KRAGEGVVEVKVRQTGESVEVPVHELID 559


>gi|303258207|ref|ZP_07344214.1| proline--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|302858960|gb|EFL82044.1| proline--tRNA ligase [Burkholderiales bacterium 1_1_47]
          Length = 582

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+   +E P DAEI S KLMLR GMI + + G+Y+++P+G ++L  +  I+REE
Sbjct: 1   MRAKQFFISTQKEAPADAEIVSQKLMLRAGMIRKLAAGVYNYMPMGLRSLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P +Q A+LW E+GR+  YG E+LR  DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAIELLMPIVQPAELWQETGRWQKYGAELLRFKDRHDRDFVLQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  FYQIQ KFRDE RPRFGVMR R+F+MKDAYSFD T E +  SY+KMF +
Sbjct: 121 EIKSWRQLPVNFYQIQTKFRDERRPRFGVMRGRDFVMKDAYSFDRTAEDAGKSYDKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF RLGL    +RA+SG IGG  S EF V+ADTGE   VFC
Sbjct: 181 YCRIFDRLGLVYRAVRADSGSIGGSRSQEFQVIADTGEDLIVFC 224



 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 3/181 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+F+ G KYS PM+AT+   +GK   +QMG 
Sbjct: 393 VADIRNVVEGDVSPDGKGTLKMQRGIEVGHVFFLGDKYSAPMNATYLDENGKPQLLQMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R++ A IE  HD KGIIWPDS+APF + +  +     +  + A  ++Y RL + 
Sbjct: 453 YGIGISRLLGAAIEQGHDDKGIIWPDSIAPFTVVICPVGYDKSEEVQKASNELYGRLREA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA  +L+G P +V +G + + + +VE  HR     E++ + E+ 
Sbjct: 513 GIDVILDDRGLRPGVMFADWELIGVPHRVTIGDRGLKNGEVEYAHRGDLQNENVPVSEIA 572

Query: 436 N 436
           +
Sbjct: 573 D 573


>gi|239826651|ref|YP_002949275.1| prolyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259511599|sp|C5D9C3|SYP_GEOSW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239806944|gb|ACS24009.1| prolyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 567

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAIELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEIITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYS 224



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+AT+   +G+   + MG YGIG  R+VAA+ E   D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSKAMNATYLDENGRSQTMIMGCYGIGVSRLVAAIAEQFADENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + LI++ A ++  R   ++ Y +L + G +V +DD  E+ G +FA +DL+
Sbjct: 463 VWPASVAPFHVHLISVNAKNEEQRQLADEWYEKLGQAGFEVLYDDRPERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P++V VG K  ++  VEIK R TG   ++S++E+I+
Sbjct: 523 GIPIRVTVG-KRANEGIVEIKVRQTGESMEVSVDELID 559


>gi|171057265|ref|YP_001789614.1| prolyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|226701306|sp|B1XYW5|SYP_LEPCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170774710|gb|ACB32849.1| prolyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 581

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SH+LM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MKASQFFIATLKEAPADAEVKSHQLMMRAGMIKRLGAGIYNYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+D  G E+LR+ DR+D+  I  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRFDKMGPELLRVKDRHDRDFIIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD     +  SY+ MF +
Sbjct: 121 ELRSYKQLPKNFYHIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAASAARSYDAMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL+   + A++G IGGDLSHEF V+ADTGE   V+C
Sbjct: 181 YKRIFDRFGLQYRAVAADTGAIGGDLSHEFQVIADTGEDAIVYC 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 128/252 (50%), Gaps = 22/252 (8%)

Query: 200 GPIGGDLSHEFIVLADTGETQV---FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           GPIG  L     V+AD    Q+    C  + +DF +   N   D                
Sbjct: 345 GPIG--LKKPVKVIADRTVAQMADFICGANEIDFHLTGINWGRD------------LPEP 390

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            A +D+ N    D  P+ + V A  RGIEVGH+F+ GTKYS  M+AT+   +GK  +++M
Sbjct: 391 DAVADIRNVVEGDPSPDGQGVLAIQRGIEVGHVFFLGTKYSKAMNATYLDENGKPQFMEM 450

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC--RDACEKIYARL 372
           G YGIG  R++ A IE  HD +GI+WPD++APF + +  I  +D+    + A + ++  L
Sbjct: 451 GCYGIGVTRILGAAIEQKHDARGILWPDAIAPFTVVVCPI-GYDRSAEVKAAADALHDEL 509

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G DV  DD GE+ G+ FA  +L+G P +V++  + +   +VE + R       +   
Sbjct: 510 QAAGIDVMLDDRGERPGAMFADWELIGVPHRVVISDRGLKAGQVEYQGRCDEAASTVPAA 569

Query: 433 EVINYASHRFSN 444
           EV  +   R  +
Sbjct: 570 EVAAFVKGRLRS 581


>gi|145637732|ref|ZP_01793384.1| prolyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145269081|gb|EDK09032.1| prolyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 572

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGVPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|254491952|ref|ZP_05105130.1| prolyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224462767|gb|EEF79038.1| prolyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 569

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   +  L+E P DAEI SH+LMLR G+I + + G+Y+WLP+G K L    AIIR+E
Sbjct: 1   MRASNLLISTLKETPADAEIVSHQLMLRAGLIRRLASGLYTWLPMGLKVLRKTEAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P++Q ++LW ES R++ YG E+LR+ DR+ +   YGPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPSVQPSELWQESQRWEKYGPELLRITDRHQREFCYGPTHEEVITDLVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFG+MR+REFLMKDAYSF L     + +Y+ MF +
Sbjct: 121 EIRSYKQLPINFYQIQTKFRDEIRPRFGLMRAREFLMKDAYSFHLDHASLQQTYDDMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL   P++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSRIFSRIGLDFRPVQADTGSIGGNASHEFHVLASSGEDAIAFS 224



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+ N    D  P+ +     ARGIEVGHIF  G  YS  ++A      GK   + MG 
Sbjct: 382 TADLRNVVAGDPSPDGQGTLDIARGIEVGHIFQLGENYSSKLNAVVLNETGKSQVITMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GIIWP+++AP+++ L+ + AH  V  +   E+IY +L   
Sbjct: 442 YGIGVSRVVAAAIEQNNDDRGIIWPEAIAPYQVVLVPVNAHKSVRVKQKAEEIYQQLQAA 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA  +L+G P ++I+G + + +  +E K R TG  ++  +E VI
Sbjct: 502 GIDVLLDDRGLRPGVAFADMELIGIPHRLILGERGLDNGMIEYKSRRTGEGDEFPIESVI 561

Query: 436 NYASHRFS 443
                + S
Sbjct: 562 ETIKQKLS 569


>gi|89093619|ref|ZP_01166566.1| prolyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89082015|gb|EAR61240.1| prolyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 574

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  ++E P DAE+ SH+LMLR G+I + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRTSQYLISTVKETPSDAEVISHQLMLRAGLIRKVASGLYNWLPLGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDKSGAMEVLMPAVQPAELWEESGRWEQYGPELLRVNDRHNREFCVGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +  +  + +Y+ M  +
Sbjct: 121 EIKSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHVGQDSLQETYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YTNIFTRLGLDFRPVLADTGSIGGATSHEFHVLADSGEDDIAFS 224



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  + A     +GK   + MG YGIG  RV+AA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGQKYSEALKAEVLDQNGKSVVMNMGCYGIGVTRVIAAAIEQNHDDGGII 466

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVAD 396
           WP+++APF I+LI ++       ++  +++Y  L + G DV  DD  ++   G +FA  D
Sbjct: 467 WPEAIAPFHIALIPLQYDKSAEVKELTDRLYQELQQAGYDVIVDDRDKKTSPGVKFADMD 526

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           L+G P +V++  +      +E K R    ++D+ ++EV+   + R +
Sbjct: 527 LMGIPHRVVISPRGNEAGTLEYKGRRDDEKQDVQIDEVLPLLAERIN 573


>gi|24374667|ref|NP_718710.1| prolyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|81845788|sp|Q8ECI8|SYP_SHEON RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24349306|gb|AAN56154.1|AE015752_11 prolyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 570

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 124/244 (50%), Positives = 167/244 (68%), Gaps = 8/244 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDMDTLNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPM 240

Query: 233 PSEN 236
           P+E 
Sbjct: 241 PTET 244



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDVPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQIVDF 564


>gi|68249330|ref|YP_248442.1| prolyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|229844600|ref|ZP_04464739.1| prolyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|81336245|sp|Q4QMG5|SYP_HAEI8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68057529|gb|AAX87782.1| prolyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|229812314|gb|EEP48004.1| prolyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 572

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 175/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFRRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + I++     +  AP A     D  N K    L E 
Sbjct: 237 EAIAIG----ERQAPTAEMCLVDTPNAKTIAELVEQ 268



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGIPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|317121850|ref|YP_004101853.1| prolyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315591830|gb|ADU51126.1| prolyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 586

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+++P +AEIASH+LMLR G+I + + GIY WLPLG++A+  V AI+REE
Sbjct: 1   MRWSRLLIPTLRDDPAEAEIASHRLMLRAGLIRRVTAGIYEWLPLGRRAVAKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +Q A+LW E+GR+  YG+EM RL DR+ +    GPTHEE++TD+ R+
Sbjct: 61  MNRKGGLEVGLPIVQPAELWRETGRWAEYGEEMWRLKDRHGREYCLGPTHEEIITDLVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ K+RDE+RPRFGVMR+REF+MKDAYSFD+  EG + SY  M  +
Sbjct: 121 TVSSYRQLPLLLYQIQNKYRDEIRPRFGVMRAREFVMKDAYSFDVDAEGLERSYQAMDDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL    + A+ G IGG  +HEF+ LAD GE   V+C
Sbjct: 181 YRRIFSRCGLVFRAVAADPGAIGGSGTHEFMALADYGEALIVYC 224



 Score =  149 bits (376), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 106/176 (60%), Gaps = 2/176 (1%)

Query: 269 DSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           DS P+      SARGIEVG IF   TKYS  +  TFK ADG++  + MG YGIG  R VA
Sbjct: 394 DSCPDCGAPMASARGIEVGQIFKLWTKYSEALGCTFKDADGRERPMVMGCYGIGVTRTVA 453

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           AVIE  HD KGIIWP SVAPF   ++ +  ++   R A E+IY +L + G +   DD  E
Sbjct: 454 AVIEQHHDEKGIIWPMSVAPFHAVVVPVNYNEPDQRQAAERIYGQLVEAGVEAVLDDRDE 513

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + G +F  ADL+GFPL+V VG + +++ KVEI  R TG  + + +E      + R 
Sbjct: 514 RPGVKFNDADLIGFPLRVTVGPRGLAEGKVEIVDRATGQADPVPVEHAAAEVARRV 569


>gi|224058287|ref|XP_002194154.1| PREDICTED: prolyl-tRNA synthetase 2, mitochondrial (putative)
           [Taeniopygia guttata]
          Length = 470

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 226/435 (51%), Gaps = 46/435 (10%)

Query: 1   MRRSKYFLPIL---------QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALD 51
           +R S+ F P+          +  P +    S +LML+ G+IH  S G Y +LP   +A++
Sbjct: 34  LRLSQLFQPLALPVGGQVSSEARPGEPTCRSQRLMLQAGLIHPTSPGCYCYLPPTVRAME 93

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
            +  ++ EE    G  ++++P+L SA+LW  SGR+D  G E+ RL DR+D     GPTHE
Sbjct: 94  KLIQLMDEEMQAVGGQKLNLPSLCSAELWRASGRWDQMGPELFRLVDRHDHGYCLGPTHE 153

Query: 112 EVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           EV+T +  S    SY+ LP   YQ+  KFRDE +PRFG++RSREF MKD Y+FD + E +
Sbjct: 154 EVVTALVASQTGLSYKQLPLRLYQVTRKFRDEPKPRFGLLRSREFYMKDMYTFDSSEEAA 213

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMD 229
           + +Y ++  +Y  +F RLGL  + ++A +G IGG  SHEF + AD GE + + C +    
Sbjct: 214 RRTYEQVCAAYCSLFARLGLPFVKVQAATGSIGGSTSHEFQLPADIGEDRLLLCPQGHFA 273

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             + + N             EQ  AP         EKL ++         +GIEVGH FY
Sbjct: 274 AKVETLNR------------EQPRAPTC------GEKLTET---------KGIEVGHTFY 306

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS   +A F  A+ K    +MG YG+G  R++AA IE       I WP  +AP+++
Sbjct: 307 LGTKYSSVANAVFSSAENKPQLAEMGCYGLGVTRILAASIEVLSTEDSIRWPSLIAPYQL 366

Query: 350 SLINIKAHDQ---VCRDACEKIYARLSK----VGCDVFWDDMGE-QIGSQFAVADLLGFP 401
             I  K   +         E++Y  L +    +  D   DD  +  IG +   A  LG+P
Sbjct: 367 CFIPPKRGSKEEEEGAALLERVYDELEEALPHLAGDSVLDDRSQLTIGKRLKDAKRLGYP 426

Query: 402 LQVIVGSKFVSDSKV 416
             V+ G +   D  V
Sbjct: 427 YVVVAGKRVCEDPPV 441


>gi|256823089|ref|YP_003147052.1| prolyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796628|gb|ACV27284.1| prolyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 571

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E+P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRSSQYLLSTQREDPSDAELISHKLMLRAGMIRKIASGMYTWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIEM +P++Q ++LW ESGR+D +G E+LR  DR+ +    GPTHEE++T + R 
Sbjct: 61  MNKAGAIEMLMPSVQPSELWEESGRWDQFGPELLRFKDRHGRDFCLGPTHEEIITAVIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP +FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF +  E    +Y  M  +
Sbjct: 121 EINSYKQLPASFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHVDEESLSETYQVMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL   P+ A++G IGG  SHEF VLA++GE  +  S +
Sbjct: 181 YCNIFERIGLDYRPVLADTGAIGGSNSHEFHVLAESGEDAIAFSSE 226



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           Q  A  +   D+ N    D  P+ K +    RGIEVGHIF  G KYS  M+      +GK
Sbjct: 375 QRDAQISEVMDIRNVVAGDPSPDGKGILEIKRGIEVGHIFQLGNKYSEAMNCKVLDQNGK 434

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEK 367
              + MG YG+G  R+VAA IE ++D  GIIWP ++APF++++I +  H  +  +   +K
Sbjct: 435 AVTLAMGCYGVGVSRIVAAAIEQNYDNNGIIWPQAIAPFQVAIIPMNMHRSEQVQQIADK 494

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L + G DV +DD  E+ G  F+  +L+G P +++V  + + +  +E K+R    ++
Sbjct: 495 LYQDLQQQGIDVIFDDRKERPGVMFSDMELIGVPHRLVVSERGLENGTIEYKNRQNTAKD 554

Query: 428 DMSLEEVINY 437
           D+S+E V++Y
Sbjct: 555 DVSVENVVDY 564


>gi|260583173|ref|ZP_05850953.1| prolyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260093791|gb|EEW77699.1| prolyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 572

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE 226



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 405 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGII 464

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 465 WPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  V++G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 525 IGIPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|87121381|ref|ZP_01077270.1| prolyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86163224|gb|EAQ64500.1| prolyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 575

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/253 (50%), Positives = 169/253 (66%), Gaps = 4/253 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L+  P DA + SHKLM+R GMI Q SKG+Y+WLP G K    V  I+REE
Sbjct: 1   MRASNYLFSTLRNPPTDAVVTSHKLMMRAGMIRQVSKGLYTWLPTGLKVFRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q  +LW ESGR+  YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MQRAGALEIIMPGVQPKELWEESGRWQEYGPELLRIKDRHERDYCLGPTHEEVVTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +PE  + +Y+ M  +
Sbjct: 121 EISSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFMMKDAYSFHSSPESLQTTYDVMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y ++F R+GL   P+RA++G IGG  SHEF VLA++GE  +  S D  DF   + N +  
Sbjct: 181 YCKVFDRVGLNYRPVRADTGSIGGAFSHEFHVLAESGEDDIAFS-DSSDF---AANIELA 236

Query: 241 DIISLNSIVEQWT 253
           + IS   I +  T
Sbjct: 237 EAISDKQIADAPT 249



 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF  G KY+  ++A     +GK   + MG 
Sbjct: 388 VADIRNVVAGDPSPDGKGVIEIKRGIEVGHIFQLGQKYADALNANVLDENGKAQTMWMGC 447

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D KGI+WPD++APF++S++ +K    +  R+  ++IYA L   
Sbjct: 448 YGIGVSRVVAAAIEQNFDDKGILWPDAIAPFQVSIVAMKYEKSEAVREQADRIYAELQAA 507

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD     G +FA A+LLG P +V++  K +    +E KHR TG  +D+SL+ ++
Sbjct: 508 GVDVMLDDRKASPGVKFADAELLGIPHRVVISDKGLEKGTIEYKHRRTGDNDDLSLDSLV 567

Query: 436 NYASHRFS 443
                R +
Sbjct: 568 KTLISRLN 575


>gi|94676512|ref|YP_589036.1| prolyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|114152171|sp|Q1LSM8|SYP_BAUCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94219662|gb|ABF13821.1| prolyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 557

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/268 (46%), Positives = 177/268 (66%), Gaps = 6/268 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DAE+ SH+LMLR G+I Q + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTIKEIPLDAEVISHQLMLRAGIIRQLASGLYTWLPTGLRILRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW+ESGR+  YG E+LR  DR+ +  + GPTHEEV+TD+ R+
Sbjct: 61  MNNIGAIEVSMPIVQPANLWLESGRWGQYGPELLRFTDRSTRQFLLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   +QI+ KFRDE+RPR+GVMRSREF+MKDAYSF  + +  + +Y+ M+ +
Sbjct: 121 EVKSYKQLPLNLFQIKTKFRDEVRPRYGVMRSREFIMKDAYSFHTSQQSLQATYDLMYYT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF---CSKDFMDFPIPSENT 237
           Y  IF+R+GL    ++A+ G IGG LSHEF+ L    E Q+     S    +  +PSEN 
Sbjct: 181 YNTIFNRIGLDVRTVQADPGSIGGHLSHEFLALVSNYEDQMLLIDASHKATERNLPSENL 240

Query: 238 DFDD---IISLNSIVEQWTAPYAATSDV 262
              D   I +L  +V+ +  P    + +
Sbjct: 241 QLVDAPGIYTLTELVKLFNLPIEKIAQI 268



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  G+KYS  M AT +G DG +  + MG YGIG  RVVAA I+  +D +G++ P
Sbjct: 394 IEVGHIFQLGSKYSKVMKATVQGEDGNNMIMTMGCYGIGITRVVAAAIDKYNDKQGLLLP 453

Query: 342 DSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            S+APF++++I I  H   + +   E++Y +LS    DV  DD  E+ G  FA  +L+G 
Sbjct: 454 VSIAPFQVAIIPINLHKSLLVQTVAEQLYNQLSIRKIDVLLDDRKERPGVMFADIELIGI 513

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P  +I+G + ++  K+E K+R  G ++ M+L  ++++   + ++
Sbjct: 514 PHIIIIGDRNLAVQKIEYKNRSNGEKKLMNLSIIVDWIVAKLNS 557


>gi|326925418|ref|XP_003208912.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Meleagris gallopavo]
          Length = 470

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/428 (37%), Positives = 229/428 (53%), Gaps = 37/428 (8%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           SH+LML+ G+IH  S G Y  LP   ++++ +  +I       G  ++++P+L SA+LW 
Sbjct: 65  SHRLMLQGGLIHPASPGCYHLLPPAVRSMEKLIRLIDGAMRNIGGQKVNMPSLSSAELWR 124

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFR 140
            SGR++  G E+ RLADR+ K    GPTHEE +T++  +H   SYR+LP   YQ+  KFR
Sbjct: 125 ASGRWEQMGPELFRLADRHSKEYCLGPTHEEAVTELVAAHSNLSYRHLPLRLYQVTRKFR 184

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE +PRFG++RSREF MKD Y+FD + E ++H+Y  +  +Y  +F  LGL+ + +RA +G
Sbjct: 185 DEPKPRFGLLRSREFYMKDMYTFDTSEEAARHTYELVCRAYRSLFKHLGLRCVQVRAATG 244

Query: 201 PIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            IGG  SHEF + AD GE + V C          + N +  D        EQ   P    
Sbjct: 245 TIGGTASHEFQLPADIGEDRLVLCPAGHF-----AANVEMVD-------EEQTACPTC-- 290

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                EKL  S         RGIEVGH FY GTKYS   +A F   + K    +MG YG+
Sbjct: 291 ----GEKLTQS---------RGIEVGHTFYLGTKYSSVHNAVFYTPENKLQLAEMGCYGL 337

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC--EKIYARLSK-VG 376
           G  R++AA IE       I WP  +APF+   I  K   +    A   E++Y  +++ + 
Sbjct: 338 GVTRILAASIEVLSTEDSIRWPSLIAPFQACFIPPKKGSKEEEGAVLLEQLYDDVAEALP 397

Query: 377 C---DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMSL 431
           C   DV  DD  +  IG +   A+ LG+P  VI G +   D  V E+  + TG    ++ 
Sbjct: 398 CLVGDVVLDDRTQMTIGKRLKDANKLGYPYVVIAGRRACEDPPVFEVWDQSTGTVLYLTK 457

Query: 432 EEVINYAS 439
           E VI   S
Sbjct: 458 EGVIELLS 465


>gi|113869200|ref|YP_727689.1| prolyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123133602|sp|Q0K6Q0|SYP_RALEH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113527976|emb|CAJ94321.1| Prolyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 573

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPIGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G + SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDTDGLRKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE   V+C
Sbjct: 181 YVRIFRRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 381 PEPVVADLRNVVAGDASPDGQGTLEICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 440

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D +GIIWP ++APF + +  +     +  +   ++I+A 
Sbjct: 441 QMGCYGIGVTRILGAAIEQNFDERGIIWPAAIAPFAVVICPVGYDRSEAVKAEADRIHAE 500

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R       +S+
Sbjct: 501 LLAAGVDVILDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGRRDAQATAVSV 560

Query: 432 EEVINYASHRFSN 444
            +V+ +   + +N
Sbjct: 561 ADVVGHVRSQLAN 573


>gi|149378080|ref|ZP_01895802.1| prolyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149357649|gb|EDM46149.1| prolyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 577

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH++MLR GMI + + G+YSWLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQMMLRAGMIRKLASGLYSWLPMGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWQESGRWEQYGGELLRMNDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSF +  E    +Y  M  +
Sbjct: 121 ELKSYKELPANFYQIQTKFRDERRPRFGVMRAREFIMKDAYSFHVNAESLNDTYQVMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL   P+ A+SG IGG  SHEF VLA +GE  +  S D
Sbjct: 181 YCAIFDRLGLDYRPVEADSGAIGGSASHEFHVLASSGEDAIVFSTD 226



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M+AT    +GK   ++MG YGIG  R+VA+ IE +HD KGII
Sbjct: 409 RGIEVGHIFKLGNKYSKAMNATVLDENGKSAILEMGCYGIGVSRIVASSIEQNHDDKGII 468

Query: 340 WPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H       A EK+Y +L + G DV  DD  E+ G +FA  +L+
Sbjct: 469 WPDAIAPFEVAIVTLNGHKSPAVMAAGEKLYEQLRQAGFDVLLDDRNERPGVKFADMELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P + +V  + ++   +E K R    ++D+ L E + +
Sbjct: 529 GIPHRFVVSERGLAAETLEYKGRRDEDKQDIPLAEALPF 567


>gi|117619295|ref|YP_858106.1| prolyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|152074744|sp|A0KPA5|SYP_AERHH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117560702|gb|ABK37650.1| prolyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 574

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 118/218 (54%), Positives = 154/218 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEIVSHQLMLRAGMIRKLASGMYAWLPSGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITSLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +       +Y +M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKASLIETYERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y   F R+GL   P++A++G IGG  SHEF VLA++GE
Sbjct: 181 YCAAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGE 218



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 119/218 (54%), Gaps = 20/218 (9%)

Query: 223 CSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           C  +   F +   N D D    ++  L ++VE   +P                 + K + 
Sbjct: 363 CGANETGFHLTGANWDRDIASYEVADLRNVVEGDPSPCG---------------QGKLLL 407

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGHIF  GTKYS  M A+     GK   ++MG YGIG  R+VAA IE ++D  GI
Sbjct: 408 KRGIEVGHIFQLGTKYSEAMKASVLNEGGKSVTMEMGCYGIGVSRLVAAAIEQNNDQYGI 467

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP+++APF+++++ +  H  +   +  ++ YA L   G DV +DD  E+ G  FA  +L
Sbjct: 468 IWPEAIAPFEVAIVPMNMHKSERVAEQAQQFYAELKAAGVDVLFDDRKERPGVMFADMEL 527

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LG P  +++G + + +  VE K R TG ++++++ E++
Sbjct: 528 LGVPHAIVIGDRGLDNGVVEYKCRRTGEKQEVAISEIV 565


>gi|113461448|ref|YP_719517.1| prolyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123031424|sp|Q0I4S8|SYP_HAES1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112823491|gb|ABI25580.1| prolyl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 571

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 133/282 (47%), Positives = 177/282 (62%), Gaps = 14/282 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPNDAQVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ES R++ YG E+LR  DR ++  + GPTHEEV+TD+   
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESQRWEQYGPELLRFVDRGNRDFVLGPTHEEVITDLVHR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  +++Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKECLQNTYDVMYRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +          + S N+D+ 
Sbjct: 181 YNNIFTRLGLDFRAVQADTGSIGGSASHEFQVLAKSGEDDI----------VFSSNSDYA 230

Query: 241 DIISLNSIVE--QWTAPYAATS--DVHNEKLFDSLPENKRVS 278
             I L   V   Q  AP A     D  N K  + L E   +S
Sbjct: 231 ANIELAEAVAIGQRQAPSATMELVDTPNAKTINDLVEQFNLS 272



 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 111/189 (58%), Gaps = 4/189 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG+   + MG 
Sbjct: 382 VADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRPQTMIMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIW-PDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD KGIIW  D +APF +++I +  +  +  +   E++Y  L  
Sbjct: 442 YGIGVSRVVAATIEQCHDEKGIIWSSDEIAPFTVAIIPMNMYKSKNVQIFAEELYQSLLN 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              DV +DD  E+ G  FA  +L+G P  +++G K +   ++E K+R TG ++ ++ E+V
Sbjct: 502 KNVDVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEIEYKNRRTGEKQIIAKEQV 561

Query: 435 INYASHRFS 443
           +++ + R +
Sbjct: 562 LDFLAQRVN 570


>gi|217969648|ref|YP_002354882.1| prolyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|217506975|gb|ACK53986.1| prolyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 582

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/224 (56%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAE+ S KLMLR GMI + + GIYS++P+G +A+  V AI+REE
Sbjct: 1   MRASQFHLFTLKEAPSDAEVVSQKLMLRAGMIRKVAAGIYSYMPMGLRAIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW E+GR+D  G E+LR  DR+++     PT EEV+TDI R 
Sbjct: 61  MDRAGAMELIMPMVQPAELWDETGRWDKMGDELLRFKDRHERDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ MF +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSEEAAGRSYDIMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF RLGL+   + A++G IGGD SHEF V+ADTGE   V+C
Sbjct: 181 YKRIFDRLGLEYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYC 224



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 134/289 (46%), Gaps = 36/289 (12%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV---FCS 224
           EG K  +   F +   I    G K   +    GPIG  L     V+AD     +    C 
Sbjct: 319 EGLKAGFR--FATEAEILEHFGCKPGYL----GPIG--LKKPVKVIADRTVAHMADFICG 370

Query: 225 KDFMDFPIPSEN-----TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            +  DF     N      + D +  L ++VE                  D  P+ + V A
Sbjct: 371 ANEADFHFTGVNWGRDLPEPDQVADLRNVVEG-----------------DPSPDGRGVLA 413

Query: 280 --RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVGH+FY GTKYS  M+ATF   DGK  + +MG YGIG  R++ A IE +HD +G
Sbjct: 414 IQRGIEVGHVFYLGTKYSKAMNATFLDEDGKPKHFEMGCYGIGVTRILGAAIEQNHDARG 473

Query: 338 IIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I+WP ++APF++ +  +     Q  RD  +K+Y  L   G D   DD  E+ G  FA  +
Sbjct: 474 IVWPRAIAPFEVVVCPVGWGKSQAVRDEAQKLYDALVATGVDAILDDRDERPGVMFADWE 533

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           L+G P +V +G + + +  +E + R       +   EV+ +   R +  
Sbjct: 534 LIGVPHRVTIGDRGLKEGVIEYQGRRDAEAAKLPAGEVLGHVLERLNQG 582


>gi|170718445|ref|YP_001783662.1| prolyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083500|sp|B0UWK9|SYP_HAES2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168826574|gb|ACA31945.1| prolyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 571

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 133/282 (47%), Positives = 177/282 (62%), Gaps = 14/282 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPNDAQVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ES R++ YG E+LR  DR ++  + GPTHEEV+TD+   
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESQRWEQYGPELLRFVDRGNRDFVLGPTHEEVITDLVHR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  +++Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKECLQNTYDVMYRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +          + S N+D+ 
Sbjct: 181 YNNIFTRLGLDFRAVQADTGSIGGSASHEFQVLAKSGEDDI----------VFSSNSDYA 230

Query: 241 DIISLNSIVE--QWTAPYAATS--DVHNEKLFDSLPENKRVS 278
             I L   V   Q  AP A     D  N K  + L E   +S
Sbjct: 231 ANIELAEAVAIGQRQAPSATMELVDTPNAKTINDLVEQFNLS 272



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 111/189 (58%), Gaps = 4/189 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG+   + MG 
Sbjct: 382 VADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRPQTMIMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIW-PDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD KGIIW  D +APF +++I +  +  +  +   E++Y  L  
Sbjct: 442 YGIGVSRVVAATIEQCHDEKGIIWSSDEIAPFTVAIIPMNMYKSKNVQIFAEELYQSLLN 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              DV +DD  E+ G  FA  +L+G P  +++G K +   ++E K+R TG ++ ++ E+V
Sbjct: 502 KNVDVIFDDRKERPGVMFADIELIGVPHMIVIGEKNLEKGEIEYKNRRTGEKQIIAKEQV 561

Query: 435 INYASHRFS 443
           +++ + R +
Sbjct: 562 LDFLAQRVN 570


>gi|78042796|ref|YP_360595.1| prolyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|114152179|sp|Q3AB89|SYP_CARHZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77994911|gb|ABB13810.1| prolyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 569

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 175/265 (66%), Gaps = 4/265 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+ENP +AE+ SHKL+LR G I + + G+Y++LPL Q+ L  +  IIREE
Sbjct: 1   MRLSQYFMPTLRENPAEAEVISHKLLLRAGFIRKSASGVYTYLPLAQRVLKKIMQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P LQ A+LW+E+GR+  YG E+ +L DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDRQGGQELMLPILQPAELWLETGRWHVYGPELFKLKDRHNRDFCLGPTHEEIITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   EG + SY KM+ +
Sbjct: 121 EVRSYKELPLLLYQIQNKYRDEKRPRFGLMRGREFIMKDLYSFDRDEEGLEISYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDF 239
           Y  +F R GLK   + A++G IGG  +HEF+VLA++GE   V+C  D   +    E  + 
Sbjct: 181 YTNVFTRCGLKFRAVEADAGAIGGSTTHEFMVLANSGEAVVVYCPDDNCGYAANLEKAET 240

Query: 240 D---DIISLNSIVEQWTAPYAATSD 261
               ++I   + +++   P   T D
Sbjct: 241 KFTPEVIGTPAEIQKVATPNVKTVD 265



 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 93/160 (58%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIEVG IF    KYS  M A +   +G+   + MG YGIG  R +AA +E +HD  
Sbjct: 401 VFARGIEVGQIFKLKDKYSRKMGAFYLDENGQQKPIIMGCYGIGVTRTMAAAVEQNHDED 460

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP ++APF++ ++ +   D+      E++Y  L   G +V  DD  E+ G +F  AD
Sbjct: 461 GIIWPAAIAPFEVIVVPVSNKDEQQMKMAEEVYNLLLNAGFEVVIDDRDERPGVKFKDAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G PL++ VG + VS+   E+K R T   +    EE+++
Sbjct: 521 LIGIPLRITVGKRTVSEGVYEVKIRRTREEKVFQKEELVD 560


>gi|262368848|ref|ZP_06062177.1| prolyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262316526|gb|EEY97564.1| prolyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 572

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+ EE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVAAIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGSLEVLMPVTQPASLWEESGRYVQYGPELLRFKDRHGNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPANFYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHSNQESLQETYDIMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF RLGL   P++A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YCKIFTRLGLDFRPVQADTGSIGGSGSHEFHVLASSGEDDIAFSTE 226



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 102/185 (55%), Gaps = 3/185 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A +    D+ N    D  P+ K      RGIEVGHIF  G KYS  +     G DGK   
Sbjct: 383 AQFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGQKYSEALGCKVLGEDGKPFT 442

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           V MG YGIG  RVVA+ IE + D KGIIWP ++APF+++++ + AH      +A E +YA
Sbjct: 443 VTMGCYGIGVTRVVASAIEQNFDEKGIIWPAAIAPFEVAIVPMNAHKSPRSLEAAEALYA 502

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L+  G DV  DD  E+ G +F+  +L G P ++++G K +     E K R      ++S
Sbjct: 503 ELTTAGYDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRRDAESVNIS 562

Query: 431 LEEVI 435
            +E++
Sbjct: 563 KDELL 567


>gi|258543749|ref|ZP_05703983.1| proline--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258520985|gb|EEV89844.1| proline--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 567

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++L   +E P DAE+ SH+LMLR GMI Q++ G+YSWLPLG + L  V  IIREE
Sbjct: 1   MRLSRFWLTTQKETPADAEVISHQLMLRAGMIRQNALGVYSWLPLGLRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G++E+ +P +Q  +LW ESGR+  YG E+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGSLELLMPGVQPGELWQESGRWQDYGPELLRFLDRHEREYCLGPTHEEVITDLMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF L     + +Y  M+ +
Sbjct: 121 DLSSYKQLPLNVYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFHLDEASLQATYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P+ A++G IGG  SHEF VLA TGE  +  S
Sbjct: 181 YCRIFDRLGLDYRPVLADNGSIGGTGSHEFHVLAATGEDAIVFS 224



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 101/183 (55%), Gaps = 3/183 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+     A  RGIEVGHIF  G KYS  M    +  DG     
Sbjct: 377 PLGKVADLRNIVEGDPAPDGSGTLAIRRGIEVGHIFQLGKKYSEAMGLKIQLEDGGSAIP 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF ++++ + A        A E +Y +
Sbjct: 437 LMGCYGIGVTRVVAAAIEQNHDERGIIWPQAIAPFTVAILPLNAAKSPEVMAAAEALYQK 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD G++ G  FA  DL+G P +V++  K +++ +VE K R +   E ++L
Sbjct: 497 LLAAGVDVVLDDRGKRPGFMFADMDLIGIPARVVISDKTLANGEVEYKERRSDSAEMVAL 556

Query: 432 EEV 434
           + +
Sbjct: 557 DAI 559


>gi|109005002|ref|XP_001114166.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Macaca mulatta]
          Length = 475

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 221/412 (53%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKFGDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +PTL  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  +  K SY+ LP
Sbjct: 119 MPTLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIAAQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +YN +  +Y  +F+RLG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYNLVCDAYCSLFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ + ++A+ G IGG +SHEF +  D GE ++  C          S N +  D+  +N  
Sbjct: 239 LRFVKVQADVGSIGGTMSHEFQLPVDVGEDRLAICPHCSF-----SANLETLDLSQMNCP 293

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             Q  +P   T                    +GIEVGH FY GTKYS   +A F    GK
Sbjct: 294 ACQ--SPLTET--------------------KGIEVGHTFYLGTKYSSIFNAQFTNIYGK 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCR 362
               +MG YG+G  R++AA IE       + WP  +AP++  LI  K      A  ++  
Sbjct: 332 PSLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELIG 391

Query: 363 DACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
             C+ I   + ++  +V  DD     IG++   A+  G+P  +I G + + D
Sbjct: 392 QLCDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALED 443


>gi|289207688|ref|YP_003459754.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943319|gb|ADC71018.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 570

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/221 (54%), Positives = 159/221 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G + + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRVSQFPLNTLKETPADAEIVSHQLMLRAGYVRRLAAGLYTWLPLGLRVLRRVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR+D YG E+LRL DR+++   +GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLMPAVQPAELWQESGRWDFYGAELLRLKDRHERDFCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  +YQIQ KFRDE RPRFG+MR+REFLMKDAYSF L  +    +Y +M  +
Sbjct: 121 EIRSYRQLPVNYYQIQTKFRDERRPRFGIMRAREFLMKDAYSFHLDADSLSRTYQQMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GL    + A++G IGG+ SHEF VLA +GE  +
Sbjct: 181 YCRIFERCGLDFRAVEADTGAIGGNASHEFHVLASSGEDAI 221



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 1/166 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  + A     DG++  V MG YGIG  RVVAA IE + D +GI 
Sbjct: 405 RGIEVGHIFQLGDKYSQALGARVLDEDGREQVVTMGCYGIGVSRVVAAAIEQNSDERGIC 464

Query: 340 WPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF I+L  I A   Q  R+A EK++  L   G  V  DD  ++ G  FA  +L+
Sbjct: 465 WPTAIAPFDIALCPIGAKKSQRVREAAEKLHDELEAAGFQVLLDDREQRPGVMFADMELI 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P ++++G + +   ++E + R     E + ++ +++    R   
Sbjct: 525 GIPHRLVIGERGLDAGELEYQARTASEAEHLPMDGLLDALRERLQG 570


>gi|138894777|ref|YP_001125230.1| prolyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166980126|sp|A4IMD1|SYP_GEOTN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134266290|gb|ABO66485.1| Prolyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 567

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G + Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQGFIPTLREVPADAEVKSHQLLLRAGFVRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++  + GPTHEE++T I R 
Sbjct: 61  MNRAGALELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFVLGPTHEEMITTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLILYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S
Sbjct: 181 YANIFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYS 224



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GTKYS  M+A +   +G+   + MG YGIG  R+VAA+ E   D  G+
Sbjct: 403 ARGIEVGHVFKLGTKYSEAMNAVYLDENGRTQTMIMGCYGIGVSRLVAAIAEQFADENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + L+   A     R   E+ Y +L + G DV +DD  E+ G +FA +DL+
Sbjct: 463 VWPVSVAPFHVHLLTANAKSDEQRMLAEEWYEKLGQAGFDVLYDDRPERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G PL+V VG K  S+  VE+K R TG   D+ + E+I
Sbjct: 523 GIPLRVTVG-KRASEGVVEVKVRKTGETFDVPVGELI 558


>gi|171463016|ref|YP_001797129.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|226701317|sp|B1XT38|SYP_POLNS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171192554|gb|ACB43515.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 580

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ FL  L+E P DAE+ SHKLM+R G+I + S G+Y++LPLG K +  V  IIREE
Sbjct: 1   MKASQSFLATLKEAPSDAEVVSHKLMVRAGLIRKLSAGVYNYLPLGLKVIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TD+ R+
Sbjct: 61  MNRAGAIELLMPMIQPAELWQETGRWEKMGPELLRIKDRHDRDFLIQPTSEEVVTDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIKSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFSMKDAYSFDRDTEGLKKSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R+GL+   + A++G IGG  S EF V+ADTGE   V+C
Sbjct: 181 YTRIFKRMGLQFRAVTADNGAIGGSGSQEFHVIADTGEDAIVYC 224



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 102/183 (55%), Gaps = 3/183 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N  + D  P+ K V    RGIEVGH+F  GT+YS  M  T+    GK   +
Sbjct: 382 PEPLVLDIRNAVVGDPSPDGKGVVDICRGIEVGHVFQLGTRYSEAMGCTYLDQQGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE  HD KGIIWP S+AP ++ +  +     +  + AC++++  
Sbjct: 442 VMGCYGIGVTRLLGAAIEQGHDEKGIIWPISMAPCEVVICPMGYEKSEAVKAACDQLHDG 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G+ FA   L+G P +V++G + + DS+VE K R     +++ L
Sbjct: 502 LLAAGVDVILDDRNERPGAMFADWGLIGAPFRVVIGDRGLVDSQVEFKGRTDAESQNIPL 561

Query: 432 EEV 434
            ++
Sbjct: 562 TQI 564


>gi|296135005|ref|YP_003642247.1| prolyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795127|gb|ADG29917.1| prolyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 576

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 166/229 (72%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+   +++P DA++ S  LMLR GMI +H+ G+YS+LPLG +++  V AI+REE
Sbjct: 1   MKISRFFISTQKDDPADADVRSQALMLRAGMIKKHAAGLYSYLPLGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR D +G E+LR+ DR+D+  +  PT EEV+TD+ RS
Sbjct: 61  MNRAGAIELLMPVVQPAELWQETGRLDQFGPELLRIKDRHDRDFVIQPTSEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S+R LP  FY IQ KFRDE RPRFGVMR+REF MKDAYSFD   E ++ SY  MF +
Sbjct: 121 EVRSWRQLPLNFYHIQTKFRDERRPRFGVMRAREFTMKDAYSFDRDFEAAQISYRVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R G +   + A+SG IGG LSHEF V+ADTGE  + +C   DF
Sbjct: 181 YVRIFQRFGFEFRAVAADSGAIGGSLSHEFHVIADTGEDAIAYCEGSDF 229



 Score =  139 bits (350), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 129/266 (48%), Gaps = 33/266 (12%)

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAES-------------GPIGGDLSHEFIVLADTGE 218
           H+ N++ VS L      GL S  M  E+             GPIG    H   V+AD   
Sbjct: 305 HAVNEVKVSKL-----AGLASTRMATEAEIVATFGTPPGYLGPIG--TVHPVRVIADR-- 355

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                  +  DF + +   DF        +      P    +D+ N +  D  P+ K V 
Sbjct: 356 ----TVANMSDFVVGANAVDF----HYTGVNWGRDLPEPEVADIRNVQAGDPSPDGKGVL 407

Query: 279 A--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +  RGIEVGH+FY GTKYS  M ATF    GK   ++MG YGIG  R++ A IE +HD K
Sbjct: 408 SICRGIEVGHVFYLGTKYSAAMGATFLDDKGKSQTLEMGCYGIGITRILGACIEQNHDAK 467

Query: 337 GIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+IWPD++APF   +  I     +  R A + +YA L   G DV  DD GE+ G      
Sbjct: 468 GMIWPDAIAPFTAVICPIGYDRSEAVRQAADALYAELIAAGVDVALDDRGERPGVMLGDW 527

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +L+G P ++++  + ++   VE +HR
Sbjct: 528 ELIGVPHRMVISDRGLAAGTVEYQHR 553


>gi|33603207|ref|NP_890767.1| prolyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|81836865|sp|Q7WFN9|SYP_BORBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33568838|emb|CAE34596.1| prolyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 576

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/218 (55%), Positives = 159/218 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE
Sbjct: 181 YQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGE 218



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGH+F+ GTKYS  + ATF   +GK   +QMG 
Sbjct: 387 VADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++AP+++ +  +     +  RD    +Y  L   
Sbjct: 447 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVICPVGWGKSETVRDTALALYEALRAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD   + G  FA  +L+G PL+V VG + +++  VE++ R
Sbjct: 507 GVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGLNEGVVELQAR 552


>gi|294339022|emb|CAZ87369.1| proline tRNA synthetase [Thiomonas sp. 3As]
          Length = 576

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 166/229 (72%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+   +++P DA++ S  LMLR GMI +H+ G+YS+LPLG +++  V AI+REE
Sbjct: 1   MKISRFFISTQKDDPADADVRSQALMLRAGMIKKHAAGLYSYLPLGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR D +G E+LR+ DR+D+  +  PT EEV+TD+ RS
Sbjct: 61  MNRAGAIELLMPVVQPAELWQETGRLDQFGPELLRIKDRHDRDFVIQPTSEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S+R LP  FY IQ KFRDE RPRFGVMR+REF MKDAYSFD   E ++ SY  MF +
Sbjct: 121 EVRSWRQLPLNFYHIQTKFRDERRPRFGVMRAREFTMKDAYSFDRDFEAAQISYRVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-SKDF 227
           Y+RIF R G +   + A+SG IGG LSHEF V+ADTGE  + +C   DF
Sbjct: 181 YVRIFQRFGFEFRAVAADSGAIGGSLSHEFHVIADTGEDAIAYCEGSDF 229



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 129/266 (48%), Gaps = 33/266 (12%)

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAES-------------GPIGGDLSHEFIVLADTGE 218
           H+ N++ VS L      GL S  M  E+             GPIG    H   V+AD   
Sbjct: 305 HAVNEVKVSKL-----AGLASTRMATEAEIVATFGTPPGYLGPIG--TVHPVRVIADR-- 355

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                  +  DF + +   DF        +      P    +D+ N +  D  P+ K V 
Sbjct: 356 ----TVANMSDFVVGANAVDF----HYTGVNWGRDLPEPEVADIRNVQAGDPSPDGKGVL 407

Query: 279 A--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +  RGIEVGH+FY GTKYS  M ATF    GK   ++MG YGIG  R++ A IE +HD K
Sbjct: 408 SICRGIEVGHVFYLGTKYSAAMGATFLDDKGKSQTLEMGCYGIGITRILGACIEQNHDAK 467

Query: 337 GIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+IWPD++APF   +  I     +  R A + +YA L   G DV  DD GE+ G      
Sbjct: 468 GMIWPDAIAPFTAVICPIGYDRSEAVRQAADALYAELIAAGVDVALDDRGERPGVMLGDW 527

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +L+G P ++++  + ++   VE +HR
Sbjct: 528 ELIGVPHRMVISDRGLAAGTVEYQHR 553


>gi|161621298|ref|YP_585241.2| prolyl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|114152237|sp|Q1LIQ4|SYP_RALME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 573

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI R+
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDIDGLKASYQNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE   V+C
Sbjct: 181 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P  A +D+ N    D+ P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 381 PEPAVADLRNVVAGDASPDGKGTLDICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 440

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE ++D +GIIWP ++APF + +  +    ++  +   ++I+A 
Sbjct: 441 QMGCYGIGVTRILGAAIEQNYDERGIIWPAAIAPFAVVVCPVGYDRNEAVKAEADRIHAE 500

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R
Sbjct: 501 LLAAGVDVILDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGR 550


>gi|33594237|ref|NP_881881.1| prolyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|81836185|sp|Q7VTZ8|SYP_BORPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33564312|emb|CAE43613.1| prolyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|332383651|gb|AEE68498.1| prolyl-tRNA synthetase [Bordetella pertussis CS]
          Length = 576

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/218 (55%), Positives = 159/218 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE
Sbjct: 181 YQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGE 218



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGH+F+ GTKYS  + ATF   +GK   +QMG 
Sbjct: 387 VADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++AP+++ +  +     +  RD    +Y  L   
Sbjct: 447 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVICPVGWGKSETVRDTALALYEALRAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD   + G  FA  +L+G PL+V VG + +++  VE++ R
Sbjct: 507 GVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGLNEGVVELQAR 552


>gi|145297802|ref|YP_001140643.1| prolyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166980094|sp|A4SJ23|SYP_AERS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|142850574|gb|ABO88895.1| prolyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 574

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/218 (53%), Positives = 154/218 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEVVSHQLMLRAGMIRKLASGMYAWLPSGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITSLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +       +Y +M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKASLIETYERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y   F R+GL   P++A++G IGG  SHEF VLA++GE
Sbjct: 181 YCAAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGE 218



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 119/218 (54%), Gaps = 20/218 (9%)

Query: 223 CSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           C  +   F +   N D D    ++  L ++VE   +P                 + K + 
Sbjct: 363 CGANETGFHLTGANWDRDIATYEVADLRNVVEGDPSPCG---------------QGKLLL 407

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGHIF  GTKYS  M A+     GK   ++MG YGIG  R+VAA IE ++D  GI
Sbjct: 408 KRGIEVGHIFQLGTKYSEAMKASVLNEGGKSVTMEMGCYGIGVSRLVAAAIEQNNDQYGI 467

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWPD++APF+++++ +  H  +   +  ++ YA L   G DV +DD  E+ G  FA  +L
Sbjct: 468 IWPDAIAPFEVAIVPMNMHKSERVAEQAQQFYAELKAAGVDVLFDDRKERPGVMFADMEL 527

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LG P  +++G + + +  VE K R +G ++++++ E++
Sbjct: 528 LGVPHAIVIGDRGLDNGVVEYKCRRSGEKQEVAITEIV 565


>gi|153001389|ref|YP_001367070.1| prolyl-tRNA synthetase [Shewanella baltica OS185]
 gi|166980156|sp|A6WQB8|SYP_SHEB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151366007|gb|ABS09007.1| prolyl-tRNA synthetase [Shewanella baltica OS185]
          Length = 571

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/243 (50%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPV 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 108/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PTAQVADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQLLDF 564


>gi|71906284|ref|YP_283871.1| prolyl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|114152186|sp|Q47ID0|SYP_DECAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71845905|gb|AAZ45401.1| Prolyl-tRNA synthetase, bacterial [Dechloromonas aromatica RCB]
          Length = 576

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F   L+E P DAE+ S K+MLR G I + + GIY+W+PLG + L  V  I+REE
Sbjct: 1   MRTSQFFFTTLKEAPADAEVISQKMMLRAGYIKRAAAGIYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRHQREFVIGPTHEEVITDVVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSF  + +  K  Y  M+ +
Sbjct: 121 DVKSYRQLPIHLYQIQTKFRDEIRPRFGVMRGREFLMKDGYSFHASFDDLKREYGNMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  + FC
Sbjct: 181 YSRIFSRLGLKFRAVAADTGSIGGTGSHEFHVLADSGEDDIAFC 224



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 3/171 (1%)

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D+ P  + K    RGIEVGHIF    KY+  ++  +    GK   +
Sbjct: 383 PEPEVFDIRNVVAGDASPDGQGKLEILRGIEVGHIFQLRQKYAEALNCVYLDDSGKSQIM 442

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
           +MG YGIG  R+V A IE  +D KGII P ++APF++ ++ +  H  +  + + +++YA 
Sbjct: 443 EMGCYGIGVSRIVGAAIEQGNDDKGIILPPAIAPFEVCIVPMGYHKSEAVKASADQLYAD 502

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           L K+G DV  DD  E+ G  FA  +L+G P +V++G + + D   E K R+
Sbjct: 503 LKKIGVDVVLDDRNERPGVMFADMELIGIPHRVVIGERGLKDGLFEYKSRI 553


>gi|94267977|ref|ZP_01291052.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
 gi|93451782|gb|EAT02540.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
          Length = 572

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/225 (53%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR GMI + + G+YS+LPLG  A+  V  I+R+E
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRAGMIRKLTSGVYSYLPLGLAAIRKVEEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFQDRHQRESCLGPTHEEVITDLVRL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD     +  +Y KM  +
Sbjct: 121 NVHSYRDLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDADEAAADETYRKMQAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +
Sbjct: 181 YQRIFARCGLAFRAVEADTGSIGGSFSHEFMVLAATGEDLVVTCQ 225



 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 92/145 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G +YS  ++ATF   +G+  +  MG +GIG  R VAA IE +HD  GII
Sbjct: 402 RGIEVGHIFKLGNEYSRALNATFLDKEGQSRHFIMGCFGIGVSRTVAAAIEQNHDRDGII 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF++ L+N+   D       +++Y  L+  G +V  DD  E+ G++F  ADL+G
Sbjct: 462 FPLPIAPFQVILLNLTPKDPEISAEAQRLYRELTAAGLEVLLDDRNERPGAKFKDADLIG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
            P++++VG +F  +  +EI++R  G
Sbjct: 522 IPIRLMVGKRFAQEGLLEIRNRADG 546


>gi|160876111|ref|YP_001555427.1| prolyl-tRNA synthetase [Shewanella baltica OS195]
 gi|189083513|sp|A9KVR8|SYP_SHEB9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160861633|gb|ABX50167.1| prolyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315268308|gb|ADT95161.1| prolyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 571

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/243 (50%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPV 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+   +   ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLAQVADIRNVVEGEPTPDGSGIYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQLLDF 564


>gi|126175060|ref|YP_001051209.1| prolyl-tRNA synthetase [Shewanella baltica OS155]
 gi|166980155|sp|A3D6H7|SYP_SHEB5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125998265|gb|ABN62340.1| prolyl-tRNA synthetase [Shewanella baltica OS155]
          Length = 571

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/243 (50%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPV 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 3/185 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVIN 436
           +++++
Sbjct: 559 DQLLD 563


>gi|332534597|ref|ZP_08410430.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035947|gb|EGI72427.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 574

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR++ +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWNEFGPELMRFTDRHNRTFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF L+ E    +Y  M  +
Sbjct: 121 EISSYKQLPVTLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLSEECLDATYQAMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P+ A++G IGG LSHEF VLA++GE  +  S
Sbjct: 181 YCNIFERLGLDYRPVLADTGSIGGSLSHEFHVLAESGEDAIAFS 224



 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M A      GK+  + MG YGIG  R+VAA IE ++D  GII
Sbjct: 409 RGIEVGHIFQLGTKYSEAMKAGVLNEGGKNQTMTMGCYGIGVSRIVAAAIEQNNDQYGII 468

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP S+APF ++++ +  H      D    +Y  L   G DV +DD  E+ G  F   +L+
Sbjct: 469 WPQSIAPFDLAIVPMNMHKSHRIPDIANNLYQGLKDAGLDVLFDDRKERPGVMFNDMELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  +++G + + ++KVE+K+R TG +  + ++  I+
Sbjct: 529 GVPFTLVIGERNLDENKVELKNRRTGEKLMIDIDTAID 566


>gi|94265181|ref|ZP_01288943.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
 gi|93454322|gb|EAT04629.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
          Length = 572

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/225 (53%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR GMI + + G+YS+LPLG  A+  V  I+R+E
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRAGMIRKLTSGVYSYLPLGLAAIRKVEEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFQDRHQRESCLGPTHEEVITDLVRL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD     +  +Y KM  +
Sbjct: 121 NVHSYRDLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDADEAAADETYRKMQAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +
Sbjct: 181 YQRIFARCGLAFRAVEADTGSIGGSFSHEFMVLAATGEDLVVTCQ 225



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 92/145 (63%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G +YS  ++ATF   +G+  +  MG +GIG  R VAA IE +HD  GII
Sbjct: 402 RGIEVGHIFKLGNEYSRALNATFLDKEGQSRHFIMGCFGIGVSRTVAAAIEQNHDRDGII 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF++ L+N+   D       +++Y  L+  G +V  DD  E+ G++F  ADL+G
Sbjct: 462 FPLPIAPFQVILLNLTPKDPEISAEAQRLYQELTAAGLEVLLDDRNERPGAKFKDADLIG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
            P++++VG +F  +  +EI++R  G
Sbjct: 522 IPIRLMVGKRFAQEGLLEIRNRADG 546


>gi|291398822|ref|XP_002716008.1| PREDICTED: prolyl-tRNA synthetase (mitochondrial)(putative)
           [Oryctolagus cuniculus]
          Length = 478

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/426 (37%), Positives = 227/426 (53%), Gaps = 39/426 (9%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           S +LML+ G+I   S G Y  LP   +AL+ +  +I +E    G  ++S+P+L  A+LW 
Sbjct: 73  SQRLMLQVGLILPASPGCYHLLPYTVRALEKLVRLIDQEMQAVGGQKVSLPSLSPAELWR 132

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFR 140
            + R+D  GKE+LRL DR+ K    GPTHEEV+T +  S    SY+ LPF  YQ+  KFR
Sbjct: 133 ATQRWDLMGKELLRLQDRHGKEYCLGPTHEEVVTALVASQKNLSYKQLPFLLYQVTRKFR 192

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPRFG++R REF MKD Y+FD +PE ++ +Y  +  +Y  +F RLGL+ I  +A+ G
Sbjct: 193 DEPRPRFGLLRGREFYMKDMYTFDSSPEAARQTYGLVCDAYCSLFSRLGLQVIKAQADVG 252

Query: 201 PIGGDLSHEFIVLADTGETQ--VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
            IGG +SHEF +  + GE Q  V  S  F      S N +  D    N  V Q   P   
Sbjct: 253 SIGGTMSHEFQLPVEVGEDQLAVCPSCGF------SANVETLDSSQTNCPVCQ--GPLTE 304

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T                    RGIEVGH FY GTKYS    A F  A+GK    +MG YG
Sbjct: 305 T--------------------RGIEVGHTFYLGTKYSSIFRAQFTNAEGKPCLAEMGCYG 344

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKV- 375
           +G  R++AA IE       + WP  +AP+++ LI  K  + +    +  E++Y  +++  
Sbjct: 345 LGVSRILAAAIEVLATEDSVRWPGLLAPYQVCLIPPKKGSKEAAATELTERLYDHIAEAV 404

Query: 376 ----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMS 430
               G  V  D     IGS+   AD LG+P  V+ G + + +    E+  + TG +  ++
Sbjct: 405 PQLHGELVLDDRTHLTIGSRLKDADKLGYPFVVVAGKRALEEPACFEVWCQNTGEQLFLT 464

Query: 431 LEEVIN 436
            E V++
Sbjct: 465 REGVLD 470


>gi|217972680|ref|YP_002357431.1| prolyl-tRNA synthetase [Shewanella baltica OS223]
 gi|254782915|sp|B8EDD0|SYP_SHEB2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217497815|gb|ACK46008.1| prolyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 571

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/243 (50%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPV 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 108/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQLLDF 564


>gi|317402479|gb|EFV83047.1| ProS protein [Achromobacter xylosoxidans C54]
          Length = 576

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 163/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKIIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQKSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  + D
Sbjct: 181 YMRIFGRLGLEFRAVAADTGSIGGTRSHEFQVIADTGEDLLVYNAD 226



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGH+FY G KYS  + ATF    GK   ++MG 
Sbjct: 387 VADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGKKYSEALKATFLDETGKPAVLEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++APF++ +  +     +  R+   K+Y  L   
Sbjct: 447 YGIGITRIVGAAIEQNHDDRGIIWPRAIAPFEVVICPVGWGKSETVRNTSLKLYESLLAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD   + G  FA  +L+G PL+V VG + ++D  VE++ R
Sbjct: 507 GVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGLNDGVVELQAR 552


>gi|152976185|ref|YP_001375702.1| prolyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189083487|sp|A7GRE9|SYP_BACCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152024937|gb|ABS22707.1| prolyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 566

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/253 (50%), Positives = 168/253 (66%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  IIREE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+++F +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +     V R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDVQREVAENIYTSLQEQGYEVLLDDRTERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P++V VG K   +  VE+K R T    ++ +E++  Y
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEDLHTY 560


>gi|93355883|gb|ABF09972.1| prolyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 614

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 42  MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 101

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI R+
Sbjct: 102 MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIART 161

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 162 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDIDGLKASYQNMYDA 221

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE   V+C
Sbjct: 222 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 265



 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P  A +D+ N    D+ P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 422 PEPAVADLRNVVAGDASPDGKGTLDICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 481

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE ++D +GIIWP ++APF + +  +    ++  +   ++I+A 
Sbjct: 482 QMGCYGIGVTRILGAAIEQNYDERGIIWPAAIAPFAVVVCPVGYDRNEAVKAEADRIHAE 541

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R
Sbjct: 542 LLAAGVDVILDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGR 591


>gi|220934299|ref|YP_002513198.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254782924|sp|B8GPP4|SYP_THISH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219995609|gb|ACL72211.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 574

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/230 (53%), Positives = 164/230 (71%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L  L+E P DAE+ SH+LMLR GMI + + G+YSW PLG + L  V  ++R+E
Sbjct: 1   MRATRFPLATLKETPADAEVISHQLMLRAGMIRRLASGLYSWTPLGLRVLRKVEGLVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD  R 
Sbjct: 61  MDRAGALELLMPAVQPAELWQESGRWEQYGPELLRLKDRHMREFCFGPTHEEVITDYVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  +YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF +  +  K +Y +M  +
Sbjct: 121 EVKSYRQLPVNYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHVDEDSLKETYARMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y RIF R GL    + A++G IGG+ SHEF VLAD+GE  +  S D  D+
Sbjct: 181 YTRIFTRCGLDFRAVLADTGSIGGNASHEFHVLADSGEDAIAFS-DVSDY 229



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 101/165 (61%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT     G+   V MG YGIG  RVVAA IE +HD +GII
Sbjct: 407 RGIEVGHIFQLGRKYSEAMGATVLDEQGRSLVVTMGCYGIGVSRVVAAAIEQNHDAQGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP+++APF ++L  I A   Q  R+A + +Y RL   G +VF+DD G + G+ FA  +L+
Sbjct: 467 WPEALAPFTVALCPINAQKSQRLREAADALYERLLNAGFEVFYDDRGLRPGAMFADMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P ++++G + +   ++E K R       ++L+ V+++   R +
Sbjct: 527 GIPHRLVLGERGLDAGEIEYKGRRDTDTTQVALDGVLDFLRQRMN 571


>gi|304409899|ref|ZP_07391518.1| prolyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302394|ref|ZP_07582152.1| prolyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304351308|gb|EFM15707.1| prolyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306914432|gb|EFN44853.1| prolyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 571

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/243 (50%), Positives = 167/243 (68%), Gaps = 8/243 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPI 232
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S         +  + P+
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYSTGSDYAANIEKAESPV 240

Query: 233 PSE 235
           P+E
Sbjct: 241 PTE 243



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 108/186 (58%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSMNATVLDENGKSQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H      D  E++Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHKSHRVTDIAEQLYKD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINY 437
           ++++++
Sbjct: 559 DQLLDF 564


>gi|307822387|ref|ZP_07652619.1| prolyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307736953|gb|EFO07798.1| prolyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 569

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 164/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L  ++E P DAEIASH+LM+R G+I + + G+Y+WLPLG + +  V  I REE
Sbjct: 1   MRTTQFPLNTVKETPADAEIASHQLMIRAGLIRKLAAGLYTWLPLGLRVMRKVEKITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +TGA+E+ +P LQ A+LW E+GR++ YG E+ RL DR+D+    GPTHEE++TD+ R+
Sbjct: 61  MEKTGALEVLMPGLQPAELWQETGRWEQYGPELARLKDRHDRDFCLGPTHEEIITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T+YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L  E  + +Y  M  +
Sbjct: 121 EIKSYKQLPITYYQIQSKFRDEIRPRFGVMRSREFIMKDAYSFHLDHESLQVTYEAMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+ LGL    + A+SG IGG +SHEF VLAD+GE  +  S D
Sbjct: 181 YTNIFNHLGLNFRAVIADSGSIGGAVSHEFHVLADSGEDAIAFSTD 226



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  GTKYS  M A      GK+  + MG YGIG  RVVAA IE +HD KGI
Sbjct: 404 ARGIEVGHIFQLGTKYSEAMKAGVINEGGKNQIMTMGCYGIGISRVVAAAIEQNHDDKGI 463

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP ++APF+++L  +  H  +  ++A EK+Y  L   G DV +DD   + G  F+  +L
Sbjct: 464 IWPTNLAPFQVALCPMNMHKSERLKEASEKLYQDLLAAGIDVLFDDRKVRAGFMFSDMEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P  ++VG + +    VE K R     E++   ++I++   + 
Sbjct: 524 IGIPHCIVVGDRGLDSGTVEYKARTAEANEEIPFADIIDFLKAKL 568


>gi|257125504|ref|YP_003163618.1| prolyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257049443|gb|ACV38627.1| prolyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 570

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/305 (46%), Positives = 188/305 (61%), Gaps = 15/305 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++A+I SH+LMLR  MI+Q ++G+Y++LP G + L  +  I REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAQIVSHQLMLRAFMINQLTRGVYTYLPFGYRVLKKIENITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAQELLMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFSLGPTHEEVITDVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REF+MKD YSF LT E     Y  M  +
Sbjct: 121 SISSYKELPFNVYQIQTKFRDEMRPRFGLMRGREFVMKDGYSFHLTQESLDEEYLNMKDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    + A++G IGGD SHEF+VLA++GE  +  S D  D+    E     
Sbjct: 181 YSRIFERMGLNYRAVEADTGSIGGDASHEFMVLAESGEDDILYS-DSSDYAANVEKA--T 237

Query: 241 DIISLNSIVEQ------WTAPYAAT-SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            II L    E+         P A T  D+ N   F ++P+ K V A  + +  I   G K
Sbjct: 238 SIIELKESNEEKLPKELVETPNAKTIEDLAN---FLNIPKEKTVKA--VMLKEILEDGEK 292

Query: 294 YSLPM 298
           + L +
Sbjct: 293 FVLAL 297



 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 114/187 (60%), Gaps = 3/187 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y   +D+   K  D  P+ K V   ARGIEVGHIF  G KYS  ++AT    +GK  +++
Sbjct: 381 YDLVADIRTAKAGDLSPDGKGVLKIARGIEVGHIFKLGEKYSKALNATVLDENGKQQFIK 440

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YG+G  R+++A IE +HD  GIIWP ++AP+ + +I     D+   +  EK+Y  L+
Sbjct: 441 MGCYGMGMSRIISAAIEQNHDEYGIIWPKAIAPYHVDVIIANMKDETQVNIGEKLYNELN 500

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +   +   DD  E+ G +F  ADL+GFPL+++VG K  +D  VE+K R TG   D+ +EE
Sbjct: 501 QNKIETVLDDRNERAGFKFKDADLIGFPLKIVVG-KGAADGIVEVKDRKTGESTDVKVEE 559

Query: 434 VINYASH 440
           V+N+  +
Sbjct: 560 VLNFVKN 566


>gi|330502208|ref|YP_004379077.1| prolyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328916494|gb|AEB57325.1| prolyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 571

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 177/278 (63%), Gaps = 20/278 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAIQPAELWQESGRWVQYGPELLRIKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF       + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF---------- 230
           Y  +F RLGL   P++A++G IGG  SHEF VLAD+GE  +  S D  D+          
Sbjct: 181 YCNVFTRLGLNFRPVQADTGSIGGTGSHEFHVLADSGEDDIAFS-DSSDYAANIEKAEAL 239

Query: 231 ------PIPSEN---TDFDDIISLNSIVEQWTAPYAAT 259
                 P P+E     D  D  ++ ++VE +  P   T
Sbjct: 240 PREKVRPAPTEELRLVDTPDAKTITALVEGFNLPIEKT 277



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 24/240 (10%)

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  +F++ A+  +   F      D P+P+       +  L ++VE   +P         
Sbjct: 352 ELMSDFVIGANIDDKHYFGVNWERDLPVPT-------VADLRNVVEGDPSPDG------- 397

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                   +   V  RGIEVGHIF  GTKYS  M+    G +GK   + MG YGIG  RV
Sbjct: 398 --------QGTLVIKRGIEVGHIFQLGTKYSEAMNCQVLGENGKPVTLTMGCYGIGVSRV 449

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA IE + D +GI W D++APF I+L+ ++   +  R+A +K+YA L+  G DV  DD 
Sbjct: 450 VAAAIEQNFDERGIRWNDALAPFHIALVPLRYETEQVREATDKLYAELTAAGFDVLLDDR 509

Query: 385 GEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ++   G +FA  +L+G P +V+V  + +++ K+E K R     + + L E++++   R 
Sbjct: 510 DKKTSPGIKFADMELIGIPHRVVVSDRGLAEGKLEYKSRAETEAQAVPLAEILSFLQARI 569


>gi|299065636|emb|CBJ36808.1| Proline--tRNA ligase [Ralstonia solanacearum CMR15]
          Length = 574

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 163/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D  G EM+R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNASGAVEVLMPVVQPAELWQETGRWDKMGDEMMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYEKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +  S D
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYSPD 226



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 382 PEAEVYDLRNVVAGDPSPDGKGTLALCRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 MMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+  G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E++ R
Sbjct: 502 LAAAGIDVILDDRGERPGAMFADWELIGVPFRVVVGERGLKEGKLELQGR 551


>gi|239994929|ref|ZP_04715453.1| prolyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 440

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL    + A+SG IGG+ SHEF VLA +GE  +  S D
Sbjct: 181 YCNIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAASGEDDIAFSSD 226



 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           D+ N    D+ P+ K      RGIEVGHIF  G+KYS  M+       GK
Sbjct: 389 DIRNVVAGDASPDGKGTLDIKRGIEVGHIFQLGSKYSEAMNCGVLSESGK 438


>gi|145588388|ref|YP_001154985.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083506|sp|A4SVA7|SYP_POLSQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145046794|gb|ABP33421.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 580

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 129/249 (51%), Positives = 173/249 (69%), Gaps = 8/249 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ FL  L+E P DAE+ SHKLM+R G+I + S GIY++LPLG K +  V  IIREE
Sbjct: 1   MKASQSFLATLKEAPSDAEVVSHKLMVRAGLIRKISAGIYNYLPLGLKVIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TD+ R+
Sbjct: 61  MNRAGAIELLMPMIQPAELWQETGRWEKMGPELLRIKDRHDRDFLIQPTSEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFSMKDAYSFDRDTEGLKKSYQTMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC-SKDFMDFPIPSENTD 238
           Y +IF R+GL+   + A++G IGG  S EF V+ADTGE   V+C S D+      + N +
Sbjct: 181 YTQIFKRMGLEFRAVTADNGAIGGSGSQEFHVIADTGEDAIVYCPSSDY------AANLE 234

Query: 239 FDDIISLNS 247
             + ++LN+
Sbjct: 235 AAESLALNA 243



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 104/183 (56%), Gaps = 3/183 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N  + D  P+ K V    RGIEVGH+F  GT+YS  M  T+    GK   +
Sbjct: 382 PEPLVLDIRNAVIGDPSPDGKGVVDICRGIEVGHVFQLGTRYSEAMGCTYLDQQGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE  HD +GIIWP S+AP ++ +  +     +  + AC++++  
Sbjct: 442 VMGCYGIGVTRLLGAAIEQGHDERGIIWPISMAPVEVVICPMGYEKSEPVKAACDQLHDE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G+ FA  +L+G P +V++G + ++DS+VE K R     +++ L
Sbjct: 502 LVAAGIDVILDDRNERPGAMFADWELIGAPFRVVIGDRGLADSQVEFKGRTDADSQNIPL 561

Query: 432 EEV 434
            ++
Sbjct: 562 AQI 564


>gi|194290784|ref|YP_002006691.1| prolyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|226699135|sp|B3R894|SYP_CUPTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193224619|emb|CAQ70630.1| prolyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 573

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPIGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G + SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDTDGLRKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y+RIF R GL+   + A++G IGG  SHEF V+A+TGE   V+C
Sbjct: 181 YVRIFRRFGLEFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYC 224



 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 108/193 (55%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 381 PEPIVADLRNVVAGDASPDGQGTLEICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 440

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D +GIIWP ++APF + +  +     +  +   ++I+A 
Sbjct: 441 QMGCYGIGITRILGAAIEQNFDERGIIWPAAIAPFAVVICPVGYDRSEAVKAEADRIHAE 500

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R       +S+
Sbjct: 501 LLAAGVDVILDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGRRDAQATAVSV 560

Query: 432 EEVINYASHRFSN 444
            EV+ +     +N
Sbjct: 561 AEVVGHVRSLLAN 573


>gi|307246760|ref|ZP_07528828.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307255744|ref|ZP_07537547.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307260196|ref|ZP_07541905.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306852335|gb|EFM84572.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306861304|gb|EFM93295.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306865741|gb|EFM97620.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 571

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 113/188 (60%), Gaps = 4/188 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   
Sbjct: 377 AAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLV 436

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIY 369
           + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y
Sbjct: 437 MTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELY 496

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ +
Sbjct: 497 RTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMI 556

Query: 430 SLEEVINY 437
           + ++++ +
Sbjct: 557 AKDQLLAF 564


>gi|322515550|ref|ZP_08068532.1| proline--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322118393|gb|EFX90656.1| proline--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 571

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVEKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 111/188 (59%), Gaps = 4/188 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   
Sbjct: 377 AAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLV 436

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIY 369
           + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y
Sbjct: 437 MTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELY 496

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG +  +
Sbjct: 497 RSLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLVNGEIEYKNRRTGEKSMI 556

Query: 430 SLEEVINY 437
           + ++++ +
Sbjct: 557 TKDQLLAF 564


>gi|292491210|ref|YP_003526649.1| prolyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291579805|gb|ADE14262.1| prolyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 575

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR G I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGGFIRRLAAGLYTWLPLGLRVLRKVEGIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEILMPAVQPAELWQETGRWEQYGPELLRFTDRHQRPFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ+KFRDE+RPRFGVMR+REFLMKDAYSF L     + +Y +M+ +
Sbjct: 121 EIRSYKQLPANFYQIQVKFRDEIRPRFGVMRAREFLMKDAYSFHLDQTSLEQTYQQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL    ++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFERIGLTFRAVQADTGAIGGQTSHEFHVLAASGEDAIAFS 224



 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  G KYS  M+ T     G+   + MG YGIG  RVVAA IE +HD  GI
Sbjct: 403 ARGIEVGHIFQLGEKYSQAMNTTVLDETGQAIILTMGCYGIGVSRVVAAAIEQNHDEHGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWPD +APF+++L+ I AH  V  R+  +++Y++L   G +V  DD   + G  F   DL
Sbjct: 463 IWPDPIAPFQLALVPINAHKSVRVRETADQLYSQLQAAGFEVLLDDRQLRPGVIFTDMDL 522

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G P ++++  + +    VE K R  G    + L+ +I
Sbjct: 523 IGIPHRLVISDRGLDAGTVEYKRRRDGKTSTIQLDNLI 560


>gi|307262323|ref|ZP_07543971.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306867986|gb|EFM99814.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 571

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   + MG 
Sbjct: 382 VADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLVMTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELYRTLKA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++ +++
Sbjct: 502 QGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKDQL 561

Query: 435 INY 437
           + +
Sbjct: 562 LAF 564


>gi|307257929|ref|ZP_07539683.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306863576|gb|EFM95505.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 571

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 113/188 (60%), Gaps = 4/188 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   
Sbjct: 377 AAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLV 436

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIY 369
           + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y
Sbjct: 437 MTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELY 496

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ +
Sbjct: 497 RTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMI 556

Query: 430 SLEEVINY 437
           + ++++ +
Sbjct: 557 AKDQLLAF 564


>gi|17547535|ref|NP_520937.1| prolyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|81849506|sp|Q8XVL4|SYP_RALSO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|17429839|emb|CAD16523.1| probable prolyl-trna synthetase protein [Ralstonia solanacearum
           GMI1000]
          Length = 574

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 163/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D  G EM+R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNASGAVEVLMPVVQPAELWQETGRWDKMGDEMMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYEKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +  S D
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYSPD 226



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 382 PEAEVYDLRNVVEGDPSPDGKGTLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 MMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+  G DV  DD GE+ G+ FA  +L+G P +V+VG + + D K+E++ R
Sbjct: 502 LAAAGIDVILDDRGERPGAMFADWELIGVPFRVVVGERGLKDGKLELQGR 551


>gi|190151185|ref|YP_001969710.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307264534|ref|ZP_07546118.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|226731421|sp|B3GZ82|SYP_ACTP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189916316|gb|ACE62568.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306870133|gb|EFN01893.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 571

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   + MG 
Sbjct: 382 VADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGDDGKPLVMTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELYRTLKA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++ +++
Sbjct: 502 QGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKDQL 561

Query: 435 INY 437
           + +
Sbjct: 562 LAF 564


>gi|32035109|ref|ZP_00135161.1| COG0442: Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209292|ref|YP_001054517.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|166980093|sp|A3N3C6|SYP_ACTP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126098084|gb|ABN74912.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 571

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 113/188 (60%), Gaps = 4/188 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   
Sbjct: 377 AAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLV 436

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIY 369
           + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y
Sbjct: 437 MTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELY 496

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ +
Sbjct: 497 RTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMI 556

Query: 430 SLEEVINY 437
           + ++++ +
Sbjct: 557 AKDQLLAF 564


>gi|302879510|ref|YP_003848074.1| prolyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302582299|gb|ADL56310.1| prolyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 569

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 165/224 (73%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SH LM+R G I + + G+Y+W+PLG +AL  V AI+REE
Sbjct: 1   MRVSQFFISTLKEAPSEAELPSHILMMRAGYIRKLASGLYTWMPLGLRALRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW E+GR++ +G +ML++ DR++    +GPTHEEV+TDI R 
Sbjct: 61  MNNSGAIELLMPAVQPAELWDETGRWEVFGPQMLKIKDRHNNQFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF    +  + +Y  M+ +
Sbjct: 121 EIRSYRQLPVNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHADFDSLEQTYAVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  + +C
Sbjct: 181 YSRIFTRLGLKFRAVAADTGAIGGSGSHEFHVLADSGEDALAYC 224



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 7/176 (3%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF   TKY+  M ATF  A GK   ++MG 
Sbjct: 383 VADIRNVVTGDISPDGKGTLEICRGIEVGHIFQLRTKYAADMKATFLDAQGKAQTLEMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD +GI  P ++APF+++L+ I  +  +  R A E++YA L   
Sbjct: 443 YGIGVSRIVAAAIEQNHDPRGITLPAAIAPFQVALVPIGMNKSEAVRAAAEQLYAELKAS 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             +V +DD  E+ G  FA  +L+G P +++VG + + +  +E + R    R+D +L
Sbjct: 503 DIEVLFDDRDERPGVMFADMELIGIPHRIVVGDRGLKEGLIEYQGR----RDDAAL 554


>gi|307251435|ref|ZP_07533349.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306856519|gb|EFM88661.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 571

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 4/188 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   
Sbjct: 377 AAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLV 436

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIY 369
           + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y
Sbjct: 437 MTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELY 496

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L     DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ +
Sbjct: 497 RTLKAQDVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMI 556

Query: 430 SLEEVINY 437
           + ++++ +
Sbjct: 557 AKDQLLAF 564


>gi|303251144|ref|ZP_07337328.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307253514|ref|ZP_07535384.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649995|gb|EFL80167.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306859015|gb|EFM91058.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 571

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   + MG 
Sbjct: 382 VADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLVMTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELYRTLKA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++ +++
Sbjct: 502 QGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKDQL 561

Query: 435 INY 437
           + +
Sbjct: 562 LAF 564


>gi|303252707|ref|ZP_07338869.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307248901|ref|ZP_07530912.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648446|gb|EFL78640.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306854596|gb|EFM86788.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 571

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 4/188 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   
Sbjct: 377 AAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLV 436

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIY 369
           + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y
Sbjct: 437 MTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELY 496

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L     DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ +
Sbjct: 497 RTLKAQDVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMI 556

Query: 430 SLEEVINY 437
           + ++++ +
Sbjct: 557 AKDQLLAF 564


>gi|119470323|ref|ZP_01613082.1| prolyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119446495|gb|EAW27770.1| prolyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 574

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR+  +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWSEFGPELMRFTDRHNREFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF L+ E   ++Y  M  +
Sbjct: 121 EVNSYKQLPLTLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLSEECLNNTYQAMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YCNIFERLGLDYRPVIADTGSIGGSVSHEFHVLAESGEDAIAFS 224



 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 89/146 (60%), Gaps = 1/146 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+EVGHIF  GTKYS  M A     DGK+  + MG YG+G  R+VAA IE ++D  GII
Sbjct: 409 RGVEVGHIFQLGTKYSEAMKAGVLNEDGKNQVMTMGCYGVGVSRIVAAAIEQNNDKYGII 468

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP S+APF ++++ +  H      D    +Y  L   G DV +DD  E+ G  F   +L+
Sbjct: 469 WPQSIAPFDLAIVPMNMHKSHRIPDIANSLYQGLKDAGVDVLFDDRKERPGVMFNDMELV 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P  +++G + + ++KVE+K+R TG
Sbjct: 529 GVPFTLVIGERNLDENKVELKNRRTG 554


>gi|293603409|ref|ZP_06685836.1| proline--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292818182|gb|EFF77236.1| proline--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 576

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 129/259 (49%), Positives = 172/259 (66%), Gaps = 10/259 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKIIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G+  SY+ M+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGALKSYDTMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF+RLGL+   + A++G IGG  SHEF V+A+TGE          D  + +  TD+ 
Sbjct: 181 YMRIFNRLGLQFRAVAADTGSIGGTRSHEFQVIAETGE----------DLLVYNAETDYA 230

Query: 241 DIISLNSIVEQWTAPYAAT 259
             I L   V  +    AAT
Sbjct: 231 ANIELAEAVALYPTRGAAT 249



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGH+FY G KYS  + ATF    GK   ++MG 
Sbjct: 387 VADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGKKYSEALKATFLDETGKPAVLEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++APF++ +  +     +  RD  +K+Y  L   
Sbjct: 447 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPFEVVICPVGWGKSETVRDTAQKLYESLLAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD   + G  FA  +L+G PL+V VG + ++D  VE++ R
Sbjct: 507 GVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGLNDGVVELQAR 552


>gi|109897601|ref|YP_660856.1| prolyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|123171506|sp|Q15WD6|SYP_PSEA6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109699882|gb|ABG39802.1| prolyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 571

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR G++ + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGLVRKLASGLYTWLPTGLRVLNKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q ADLW ESGR+D YG E+LR+ DR+ +  + GPTHEEV+T + ++
Sbjct: 61  MDRAGSLEILMPVVQPADLWQESGRWDEYGPELLRIKDRHYRDFVLGPTHEEVVTALVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ+Q KFRDE+RPRFGVMR REF MKDAYSF L+ E    +Y+ MF +
Sbjct: 121 EVSSYKQLPLNVYQVQTKFRDEVRPRFGVMRGREFTMKDAYSFHLSDECLNKTYDDMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R+F R+ L+  P+ A++G IGG+ SHEF VLAD+GE  +  S
Sbjct: 181 YCRVFERINLEFRPVIADNGSIGGNASHEFHVLADSGEDDIAFS 224



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 108/183 (59%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N +  D  P+ +      RGIEVGHIF  G+KYS  ++      +GK   + MG Y
Sbjct: 387 ADIRNVQAGDPSPDGQGTLEIKRGIEVGHIFQLGSKYSEALNCGVLDENGKHQVLNMGCY 446

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD  GIIWPD++APFK++++ +  H     +   E +YA+L   G
Sbjct: 447 GIGVSRIVAAAIEQNHDKYGIIWPDAIAPFKVAIVPMNMHKSHRIQQVAEDLYAQLKAAG 506

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD  E+ G  F   +L+G P  +++G + + + KVE K+R +G ++ + + ++  
Sbjct: 507 VEVLFDDRKERPGVMFNDMELVGVPHTIVIGERNLDEQKVEYKNRRSGEKQLIDIPQLAE 566

Query: 437 YAS 439
           + S
Sbjct: 567 FVS 569


>gi|261419457|ref|YP_003253139.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319766272|ref|YP_004131773.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261375914|gb|ACX78657.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317111138|gb|ADU93630.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 567

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFMMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYS 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 127/241 (52%), Gaps = 15/241 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GPIG  +S +  V+AD     +          +   N +    I +N   +   + YA  
Sbjct: 334 GPIG--VSEDVTVIADHAVAAIVNG-------VCGANEEGYHYIGVNPGRDFAVSQYA-- 382

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   K  D  P+ K     ARGIEVGH+F  GTKYS  M+A +   +G+   + MG Y
Sbjct: 383 -DLRFVKEGDPSPDGKGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENGQTQTMIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+VAA+ E   D  G++WP SVAPF I L+   A     R   E+ Y +L + G 
Sbjct: 442 GIGVSRLVAAIAEQFADEHGLVWPASVAPFHIHLLTANAKSDEQRALAEEWYEKLGQAGF 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +DD  E+ G +FA +DL+G PL+V VG K   +  VE+K R TG   D+ + E+++ 
Sbjct: 502 EVLYDDRPERAGVKFADSDLIGIPLRVTVG-KRAGEGVVEVKVRKTGETFDVPVSELVDT 560

Query: 438 A 438
           A
Sbjct: 561 A 561


>gi|239817181|ref|YP_002946091.1| prolyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|259511631|sp|C5CXW9|SYP_VARPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239803758|gb|ACS20825.1| prolyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 581

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ASH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASRFFVSTLKEAPADAEVASHRLMMRAGMIKKLGTGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAEFWQETGRFDKMGPELLRIKDRHDRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDLDAAKASYQAMADA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V A  RGIEVGH+F  GTKYS  M+AT+    GK  +++MG 
Sbjct: 393 VADLRNVVAGDASPDGKGVLAIERGIEVGHVFVLGTKYSKDMNATYLDEAGKPQFLEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I        + A E +Y +L   
Sbjct: 453 YGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVVCPIGMDRSPEVKVAAEALYEQLLAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + ++E +HR
Sbjct: 513 GVDVLLDDRGERPGAMFADWELIGVPHRVVISDRGLKEGQLEYQHR 558


>gi|56419792|ref|YP_147110.1| prolyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81819753|sp|Q5L0J4|SYP_GEOKA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56379634|dbj|BAD75542.1| proline-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 567

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFMMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYS 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 1/160 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GTKYS  M+A +   +G+   + MG YGIG  R+VAA+ E   D  G+
Sbjct: 403 ARGIEVGHVFKLGTKYSEAMNAVYLDENGQTQTMIMGCYGIGVSRLVAAIAEQFADEHGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF I L+   A     R   E+ Y +L + G +V +DD  E+ G +FA +DL+
Sbjct: 463 VWPASVAPFHIHLLTANAKSDEQRALAEEWYEKLGQAGFEVLYDDRPERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G PL+V VG K   +  VE+K R TG   D+ + E+++ A
Sbjct: 523 GIPLRVTVG-KRAGEGVVEVKVRKTGETFDVPVSELVDTA 561


>gi|332140465|ref|YP_004426203.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|226731424|sp|B4RV73|SYP_ALTMD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|327550487|gb|AEA97205.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 572

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 159/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRVKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQVQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL    + A+SG IGG+ SHEF VLA++GE  +  S D
Sbjct: 181 YCAIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAESGEDAIAFSSD 226



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 3/176 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D+ P+ +      RGIEVGHIF  G KYS  M+       GK   + MG 
Sbjct: 387 TVDIRNVVAGDASPDGQGTLDIKRGIEVGHIFQLGRKYSEAMNCGVLSETGKHQTLTMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +  H     ++A E +Y  L  +
Sbjct: 447 YGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAAEALYEELVAL 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ + L
Sbjct: 507 GIEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQLLDL 562


>gi|300702990|ref|YP_003744592.1| proline--tRNA ligase [Ralstonia solanacearum CFBP2957]
 gi|299070653|emb|CBJ41948.1| Proline--tRNA ligase [Ralstonia solanacearum CFBP2957]
          Length = 574

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +  S +
Sbjct: 181 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYSPE 226



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 382 PEAEVADLRNVVEGDPSPDGKGTLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGR 551


>gi|332141950|ref|YP_004427688.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551972|gb|AEA98690.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 572

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 159/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRVKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQVQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL    + A+SG IGG+ SHEF VLA++GE  +  S D
Sbjct: 181 YCAIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAESGEDAIAFSSD 226



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 3/176 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D+ P+ +      RGIEVGHIF  G KYS  M+       GK   + MG 
Sbjct: 387 TVDIRNVVAGDASPDGQGTLDIKRGIEVGHIFQLGRKYSEAMNCGVLSETGKHQTLTMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +  H     ++A E +Y  L  +
Sbjct: 447 YGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAVEALYEELVAL 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ + L
Sbjct: 507 GIEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQLLDL 562


>gi|134095943|ref|YP_001101018.1| prolyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166980129|sp|A4G8R0|SYP_HERAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|133739846|emb|CAL62897.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) (Global RNA
           synthesis factor) [Herminiimonas arsenicoxydans]
          Length = 577

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGSGIYTYMPIGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  AIE+ +P +Q A+LW E+GR+D  G E++R+ DR+ +     PT EEV+TD+ RS
Sbjct: 61  MNRAHAIELLMPLVQPAELWQETGRWDKMGPELMRVKDRHGREYAIQPTSEEVVTDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIKSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDAEGLKRSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y++IF+R GL+   + A++G IGG  SHEF V+ADTGE   V+C
Sbjct: 181 YVKIFNRFGLQFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    D  P+ K V A  RGIEVGH+F  GT YS  M AT+   +GK   +
Sbjct: 385 PEAMVLDLRNVVEGDPSPDGKGVLAIQRGIEVGHVFQLGTAYSEKMKATYLDENGKPQLI 444

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R+V A IE + D +GIIWP ++APF++ L  +     +  +   +K+Y  
Sbjct: 445 QMGCYGIGVTRIVGAAIEQNFDDRGIIWPAALAPFEVVLCPMGYDRSESVKTETDKLYEA 504

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G+ FA  +L+G P ++++G + + +  +E K R       ++L
Sbjct: 505 LLAAGVDVILDDRGERPGAMFADWELIGAPHRIVIGERGLKEGALEYKGRRDADATAVAL 564

Query: 432 EEVINYASHRFS 443
           ++++ +   R +
Sbjct: 565 DDMLAFVQARLA 576


>gi|223041831|ref|ZP_03612021.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
 gi|223017400|gb|EEF15821.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 317

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 175/276 (63%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268


>gi|311259273|ref|XP_003128020.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like [Sus
           scrofa]
          Length = 472

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 152/440 (34%), Positives = 234/440 (53%), Gaps = 37/440 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+  P D    S +LML+ G+IH  S G Y  LP   +A++ +  ++ +E    G  +++
Sbjct: 56  LEGRPGDLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRAMEKLVRVVDQEMQAIGGQKVN 115

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLP 129
           +P+L  A+LW  + R+DS GKE+LRL DR+ K    GPTHEE +T +  S    SY+ LP
Sbjct: 116 MPSLSPAELWRATSRWDSMGKELLRLRDRHGKEYCLGPTHEEAITALVASQKTLSYKQLP 175

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F RLG
Sbjct: 176 VLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARRTYSLVCDAYGSLFDRLG 235

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ + ++A+ G IGG +SHEF +  D GE ++  C +        S N +  D+   N  
Sbjct: 236 LQCLQVQADVGSIGGTMSHEFQLPVDVGEDRLALCPRCSF-----SANVETLDLAQTNCP 290

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             Q   P   T                    +GIEVGH FY GTKYS   +A F    GK
Sbjct: 291 ACQ--GPLTET--------------------KGIEVGHTFYLGTKYSSIFNAQFTNVHGK 328

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       I WP  +AP+++ LI  K  + ++   +   
Sbjct: 329 ASLAEMGCYGLGVTRILAAAIEVLSAEDCIRWPGLLAPYQVCLIPPKKGSKEEAAAELTG 388

Query: 367 KIYARLS----KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKH 420
            +Y  ++    ++  +V  DD     IG++   AD LG+P  +I G + + + +  E++ 
Sbjct: 389 HLYDHITEAVPQLRGEVLLDDRTHLTIGNRLKDADKLGYPFVIIAGKRALDEPAHFEVRC 448

Query: 421 RLTGIREDMSLEEVINYASH 440
           + TG    ++ E V+   S 
Sbjct: 449 QNTGEVVFLTREGVLELLSQ 468


>gi|119946895|ref|YP_944575.1| prolyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|152112944|sp|A1SZR1|SYP_PSYIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119865499|gb|ABM04976.1| prolyl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 571

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 156/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + Y L   +E P DA I SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTNYLLSTQKEAPSDAVIVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G +E+ +P +Q ADLW+E+GR+D YG E+LR+ DR+ +  + GPTHEEV+T++ R 
Sbjct: 61  MERAGGVEVLMPIVQPADLWLETGRWDQYGGELLRIKDRHTRDFVLGPTHEEVITELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE RPRFGVMR+REF MKDAYSF +     + +Y KMF +
Sbjct: 121 EVNSYKQLPLNLFQIQTKFRDETRPRFGVMRAREFTMKDAYSFHMDQACLEKTYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA +GE  +  S +
Sbjct: 181 YCRIFDRLGLEYRPVIADTGSIGGSASHEFHVLAQSGEDAIVFSTE 226



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 103/166 (62%), Gaps = 1/166 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  G  Y+  M+A      GK+  + MG YGIG  R+VAA IE ++D  GI
Sbjct: 406 ARGIEVGHIFQLGDTYTKAMNAGVLNQQGKNQILTMGCYGIGISRIVAAAIEQNNDKNGI 465

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW +++APF + ++ +  H      +  EK YA L   G +V +DD  E+ G  FA A+L
Sbjct: 466 IWNNTLAPFSVVIVPMNMHKSHRVAELAEKYYAELQAAGIEVLFDDRKERPGIMFADAEL 525

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P  +++G + + +  +E K RL+G++++++++EVIN+   + +
Sbjct: 526 MGIPHTLVIGDRSLDNGVIEYKDRLSGVKQEVAIDEVINFIKAQLA 571


>gi|260889054|ref|ZP_05900317.1| proline--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260861114|gb|EEX75614.1| proline--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 570

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++A+I SH+LMLR  MI Q ++G+Y++LP G + L  +  I REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAQIVSHQLMLRAFMIKQLTRGVYTYLPFGYRVLKKIENITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TDI R 
Sbjct: 61  MDRAGAQELLMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFSLGPTHEEVITDIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REF+MKD YSF LT E     Y  M  +
Sbjct: 121 SISSYKELPFNVYQIQTKFRDEMRPRFGLMRGREFVMKDGYSFHLTQESLDEEYLNMKDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL    + A++G IGGD+SHEF+VLA++GE  +  S
Sbjct: 181 YSRIFERMGLNYRAVEADTGSIGGDVSHEFMVLAESGEDDILYS 224



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y   +D+   +  D  P+ K +   ARGIEVGHIF  G KYS  ++AT    +GK   ++
Sbjct: 381 YDLAADIRTARAGDLSPDGKGILKIARGIEVGHIFKLGEKYSKALNATVLDENGKQAIMK 440

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YG+G  R+++A IE +HD  GIIWP ++AP+   +I     D+   +  EK+Y  L+
Sbjct: 441 MGCYGMGMSRIISAAIEQNHDEYGIIWPKAIAPYHADIIIANMKDETQVNIGEKLYNELN 500

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +   +   DD  E+ G +F  ADL+GFPL+++VG K  +D  VEIK R TG   D+ +E+
Sbjct: 501 QNKIEAVLDDRNERAGFKFKDADLIGFPLKIVVG-KGAADGIVEIKDRKTGESTDVKVED 559

Query: 434 VINYASH 440
           V+ + ++
Sbjct: 560 VLKFVNN 566


>gi|297530568|ref|YP_003671843.1| prolyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297253820|gb|ADI27266.1| prolyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 567

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYS 224



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 97/160 (60%), Gaps = 1/160 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GTKYS  M+A +   +G+   + MG YGIG  R+VAA+ E   D  G+
Sbjct: 403 ARGIEVGHVFKLGTKYSEAMNAVYLDENGQTQTMIMGCYGIGVSRLVAAIAEQFADEHGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF I L+   A         E+ Y +L + G +V +DD  E+ G +FA +DL+
Sbjct: 463 VWPASVAPFHIHLLTANAKSDEQHALAEEWYEKLGQAGFEVLYDDRPERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G PL+V VG K   +  VE+K R TG   D+ + E+++ A
Sbjct: 523 GIPLRVTVG-KRAGEGVVEVKVRKTGETFDVPVSELVDTA 561


>gi|332307477|ref|YP_004435328.1| prolyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174806|gb|AEE24060.1| prolyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 571

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR G++ + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGLVRKLASGLYTWLPTGLRVLNKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q ADLW ESGR+D YG E+LR+ DR+ +  + GPTHEEV+T + ++
Sbjct: 61  MDRAGSLEILMPVVQPADLWQESGRWDEYGPELLRVKDRHFRDFVLGPTHEEVVTALVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSF L+ E    +Y++MF +
Sbjct: 121 EVSSYKQLPLNVYQIQTKFRDEVRPRFGVMRGREFTMKDAYSFHLSDECLNKTYDEMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R+F R+ L+  P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCRVFERINLEFRPVIADNGSIGGNASHEFHVLAESGEDDIAFS 224



 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 109/181 (60%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N +  D  P+ K      RGIEVGHIF  G+KYS  ++      +GK   + MG Y
Sbjct: 387 ADIRNVQAGDPSPDGKGTLEIKRGIEVGHIFQLGSKYSEALNCGVLDENGKHQVLNMGCY 446

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD  GIIWPD++APFK++++ +  H     +   E++YA+L   G
Sbjct: 447 GIGVSRIVAAAIEQNHDKYGIIWPDAIAPFKVAIVPMNMHKSHRIQQVAEQMYAQLKAAG 506

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD  E+ G  F   +L+G P  +++G + + + KVE K+R +G ++ + + ++ +
Sbjct: 507 IEVLFDDRKERPGVMFNDMELVGVPHTIVIGERNLDEQKVEYKNRRSGEKQLIDIPQIAD 566

Query: 437 Y 437
           +
Sbjct: 567 F 567


>gi|262037473|ref|ZP_06010933.1| proline--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261748508|gb|EEY35887.1| proline--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 576

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R SK FL   +E P++AEI SH+LMLR  MI Q ++G+YS+LPLG K L  +  I+REE
Sbjct: 7   VRLSKAFLKTYKEAPKEAEIISHQLMLRASMIKQLTRGVYSYLPLGYKVLRKIENIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  A E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TDI R+
Sbjct: 67  MNRANAQEIHMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFALGPTHEEVVTDIVRN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LPF  YQIQ KFRDE+RPRFG+MR REFLMKDAYSF +  +     Y  M  +
Sbjct: 127 MVSSYKDLPFNLYQIQTKFRDEMRPRFGLMRGREFLMKDAYSFHIDQKSLDEEYLNMKSA 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R+F R GL    + A+SG IGGD SHEF+VLAD+GE  +  S
Sbjct: 187 YERVFIRCGLDFRAVEADSGSIGGDSSHEFMVLADSGEDDILYS 230



 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 4/189 (2%)

Query: 256 YAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y   +D+   +  D  P+ K     ARGIEVGHIF  G KYS  ++AT    +GK   + 
Sbjct: 387 YDFVADIREARAGDGSPDGKGTLKVARGIEVGHIFKLGDKYSKALNATVLDENGKQQIIA 446

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  RV+AA IE +HD  GIIWP ++AP+ + +I     D+      EK+Y  L 
Sbjct: 447 MGCYGIGISRVMAAAIEQNHDEFGIIWPKNIAPYLVDVIIANIKDEAQFSLGEKLYKELC 506

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +   DD  E+ G +F  ADL+G PL+++VG K  ++ KVEIK R TG   ++  EE
Sbjct: 507 DNGIETVLDDRNERAGFKFKDADLIGIPLKIVVG-KGAAEGKVEIKDRRTGESREVKAEE 565

Query: 434 VINYASHRF 442
           V ++   RF
Sbjct: 566 VTDFV-RRF 573


>gi|301760003|ref|XP_002915815.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Ailuropoda melanoleuca]
 gi|281353585|gb|EFB29169.1| hypothetical protein PANDA_003827 [Ailuropoda melanoleuca]
          Length = 475

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/419 (35%), Positives = 220/419 (52%), Gaps = 35/419 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R    LP L++   +    S +LML+ G+IH  S G Y  LP   +A++ +  +I +E  
Sbjct: 52  REDQVLP-LEDRSGNLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRAMEKLERVIDQEMQ 110

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH- 121
             G  ++++P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  
Sbjct: 111 AIGGQKVNMPSLSPAELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAVTALVASQK 170

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++H+Y  +  +Y
Sbjct: 171 TMSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARHTYGLVCEAY 230

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F RLGL+ + ++A+ G IGG  SHEF + AD GE +      F   P    + + + 
Sbjct: 231 GSLFRRLGLRCVRVQADVGSIGGTASHEFQLPADIGEDR------FAVCPSCGFSANTET 284

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + S  +       P                       ARGIEVGH FY GTKYS   +A 
Sbjct: 285 LRSSQTDCPTCRGPL--------------------TKARGIEVGHTFYLGTKYSSIFNAQ 324

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------ 355
           F  A GK    +MG YG+G  R++AA IE       I WP  +AP+++ LI  K      
Sbjct: 325 FTDAQGKPCLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPGLLAPYQVCLIPPKKGSKEE 384

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           A  ++     + I   + ++  +V  DD     IG++   A+  G+P  +I G + + D
Sbjct: 385 AAAELMGHLYDLITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALED 443


>gi|332526531|ref|ZP_08402643.1| prolyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332110799|gb|EGJ10976.1| prolyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 582

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MKASQTFISTLKEAPADAEIVSHKLMMRAGMIKRLGAGIYNYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW+E+GR+ +YG E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWMETGRFQAYGPELLRVKDRHDRDFVIQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TFY +Q KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELRSYKQLPRTFYHVQTKFRDERRPRFGVMRGREFTMKDAYSFDRDKASALKSYDTMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y  IF R GL    + A++G IGGD SHEF V+ADTGE   V+C
Sbjct: 181 YCAIFDRFGLTYRAVAADTGAIGGDASHEFQVIADTGEDAIVYC 224



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 6/189 (3%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTK-YSLPMSATFKGADGKDHYVQMG 315
            +D+ N    D  P+ + V A  RGIEVGH+FY GTK YS PM AT+   +GK    +MG
Sbjct: 393 VADIRNVVAGDPSPDGQGVLAIQRGIEVGHVFYLGTKKYSEPMGATYLDENGKPQPFEMG 452

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC--RDACEKIYARLS 373
            YGIG  R++ A IE +HD +GIIWPD++APF +++  I  +D+    + A ++++  L+
Sbjct: 453 CYGIGVTRILGAAIEQNHDERGIIWPDAIAPFTVAVCPI-GYDRSADVKAAADQLHDELA 511

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G DV  DD GE+ G+ FA  +L+G P +V+V  + +    VE++ R       + L E
Sbjct: 512 ALGIDVVLDDRGERPGAMFADWELIGVPHRVVVSDRGLKAGTVEVQGRRETAAHTVPLAE 571

Query: 434 VINYASHRF 442
            + +   R 
Sbjct: 572 AVAFVKGRL 580


>gi|91078076|ref|XP_971952.1| PREDICTED: similar to prolyl-tRNA synthetase [Tribolium castaneum]
          Length = 448

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 250/458 (54%), Gaps = 54/458 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASH-------KLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R S+ F P+    P++AE+  H       +LML  G+I Q S G + +LPLG K+L+ + 
Sbjct: 8   RLSRLFQPV-SVVPKNAEVKRHDITSKSQRLMLELGIIRQASPGCFHFLPLGVKSLEKLT 66

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++ EE  + G  ++  PTL +A LW ++GR ++   E+ ++ DR+D++ I  PTHEE  
Sbjct: 67  RLVDEEMKKIGGQKIIFPTLTNAKLWEKTGRLETVSSELFQIKDRHDQSYILSPTHEEAA 126

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +++  S    SY++LP   YQI  K+RDE++PRFG+MR ++FLMKD YSFD   E +KH+
Sbjct: 127 SNLLASLAPISYKHLPLKLYQITSKYRDEMKPRFGLMRGKQFLMKDMYSFDTDLETAKHT 186

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+++  SY RIF R+G+  + +   SG +GG+LSHE+   AD GE               
Sbjct: 187 YDEICKSYDRIFRRIGIDFVKVVGCSGHMGGELSHEYHYKADVGE--------------- 231

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR---GIEVGHIFYF 290
                 D I++ N         Y+A ++V  E   +  P     S +   GIEVGH F  
Sbjct: 232 ------DKILTCNK------CNYSANTEVSGE---EKCPNCGNTSVKIHLGIEVGHTFLL 276

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS P++ATF    GK   +QMGSYG+G  R++AAVIE     + I WP  ++P+ + 
Sbjct: 277 GEKYSKPLNATFLNNHGKPDVLQMGSYGLGLSRILAAVIEVMSSEQEIRWPQILSPYSVI 336

Query: 351 LINIKA---HDQVCRDA--CEKIYARLSKVGC----DVFWDDMGE-QIGSQFAVADLLGF 400
           ++  K+    +   +D+   + +Y ++ +  C    +V  DD     IG +F  A   G+
Sbjct: 337 ILPPKSGSKEETHIKDSGLVDSLYEKI-ETTCNLQDNVLIDDRTNFTIGRRFLEAKKNGY 395

Query: 401 PLQVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVINY 437
           P  V +G K V +  + EI +  T     +S  +++NY
Sbjct: 396 PFIVTLGKKIVENPLLYEITNLKTNETLFLSENDLMNY 433


>gi|90417103|ref|ZP_01225031.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90331119|gb|EAS46375.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 574

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E+P DAE+ SH+LMLR GMI + + G+YSWLPLG +    V AI+R+E
Sbjct: 1   MRASQYLISTKKESPADAEVISHQLMLRAGMIRKVASGLYSWLPLGLRVFRKVEAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA+E+ +P +Q ADLW ESGR+  +G E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDRSGALEIMMPVVQPADLWTESGRWGQFGPELLRIKDRHGREFCLGPTHEEVVTDIIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFGVMR+REF MKDAYSF +     + +Y+ M+ +
Sbjct: 121 EIRSYKQLPANFYQIQTKFRDERRPRFGVMRTREFCMKDAYSFHVDSASLQETYDLMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R GL    + A++G IGG +SHEF VLAD+GE  +  S +
Sbjct: 181 YSAIFDRTGLVYRAVLADTGSIGGSVSHEFHVLADSGEDAIVFSSE 226



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 4/166 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ + V    RGIEVGHIF  GTKYS  M AT    +GKD  + MG Y
Sbjct: 386 ADIRNVVAGDPSPDGRGVLEIKRGIEVGHIFQLGTKYSEAMKATVLDENGKDRAMSMGCY 445

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD  GIIWP+S+APF+++++ I  H  +   + C+ +Y++L   G
Sbjct: 446 GIGVSRIVAAAIEQNHDDNGIIWPESIAPFQVAIVPINMHKSERVAETCQTLYSKLVSAG 505

Query: 377 CDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +V F D+   ++G   A  +L+G P ++++G + ++D  VE ++R
Sbjct: 506 YEVLFMDEPKARLGGMLADIELIGIPHRIVIGDRGLADGNVEYRNR 551


>gi|170723171|ref|YP_001750859.1| prolyl-tRNA synthetase [Pseudomonas putida W619]
 gi|226701321|sp|B1JD82|SYP_PSEPW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169761174|gb|ACA74490.1| prolyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 571

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/303 (44%), Positives = 192/303 (63%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  V          I S+++D+ 
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDV----------IFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     + + TA  A T ++   +L D+ P+ K + A+ +E          Y LP+  
Sbjct: 231 ANIEKAEAIPRETARLAPTEEL---RLVDT-PDAKTI-AQLVE---------NYGLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +     G +GK   +
Sbjct: 378 PVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEALKCQVLGENGKPVVL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++    V R+A +K+YA L
Sbjct: 438 SMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYETDVVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +E KHR     + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNLEYKHRTEQDAQALP 557

Query: 431 LEEVINYASHR 441
           L EV+ +   R
Sbjct: 558 LNEVLTFLQAR 568


>gi|315126673|ref|YP_004068676.1| prolyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315015187|gb|ADT68525.1| prolyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 574

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR+  +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWSEFGPELMRFTDRHNREFAMGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF LT E    +Y  M  +
Sbjct: 121 EINSYKQLPITLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLTDECLDATYQVMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YCNIFERLGLDFRPVIADTGSIGGSVSHEFHVLAESGEDAIAFS 224



 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 96/165 (58%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M A      GK+  + MG YGIG  RVVAA IE ++D  GI 
Sbjct: 409 RGIEVGHIFQLGTKYSEAMKAGVLSESGKNQTMTMGCYGIGVSRVVAAAIEQNNDQYGIT 468

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF ++++ +  H      D    +Y  L   G DV +DD  E+ G  F   +LL
Sbjct: 469 WPKAIAPFDLAIVPMNMHKSHRIPDIANNLYQGLKDAGLDVLFDDRKERPGVMFNDMELL 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + ++KVE+K+R TG +  + ++  I    ++F+
Sbjct: 529 GVPYTLVIGERNLDENKVELKNRRTGEKLMIDIDSAIETIKNQFN 573


>gi|169836558|ref|ZP_02869746.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 282

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++AE+ SHKLMLR  MI Q ++G+YS+LPLG K L  +  I+REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAEVISHKLMLRASMIRQLTRGVYSYLPLGYKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A LW ESGR+ +YG E++R+ DRN++    GPTHEEV+TDI R+
Sbjct: 61  MDRAGSQEILMPVLQPASLWEESGRWFAYGSELMRMKDRNEREFALGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REFLMKDAYSF LT E     +  M  +
Sbjct: 121 TITSYKELPFNLYQIQTKFRDEMRPRFGLMRGREFLMKDAYSFHLTKESLDEEFLNMKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RI  R+ LK   + A+SG IGGD S+EF+VLA+ GE  +  S
Sbjct: 181 YSRILERMELKFRAVDADSGSIGGDASNEFMVLAENGEDDILYS 224


>gi|196247600|ref|ZP_03146302.1| Proline--tRNA ligase [Geobacillus sp. G11MC16]
 gi|196212384|gb|EDY07141.1| Proline--tRNA ligase [Geobacillus sp. G11MC16]
          Length = 271

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P DAE+ SH+L+LR G + Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQGFIPTFREVPADAEVKSHQLLLRAGFVRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++  + GPTHEE++T I R 
Sbjct: 61  MNRAGALELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFVLGPTHEEMITTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLILYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S
Sbjct: 181 YANIFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYS 224


>gi|311103966|ref|YP_003976819.1| prolyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310758655|gb|ADP14104.1| prolyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 575

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/265 (49%), Positives = 173/265 (65%), Gaps = 13/265 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIHSYRQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQASYDTMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE          D  + + +TD+ 
Sbjct: 181 YMRIFGRLGLGFRAVAADTGSIGGTRSHEFQVIADTGE----------DLLVYNADTDYA 230

Query: 241 DIISLNSIVEQW---TAPYAATSDV 262
             I L   V  +     P  A +DV
Sbjct: 231 ANIELAEAVALYPTRAEPAQAMADV 255



 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGH+FY G KYS  + ATF    GK   ++MG 
Sbjct: 386 VADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGKKYSEALKATFLDETGKPAVLEMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++APF++ +  +     +  RD  +K+Y  L   
Sbjct: 446 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPFEVVICPVGWGKSETVRDTAQKLYESLLAR 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD   + G  FA  +L+G PL+V VG + ++D  VE++ R
Sbjct: 506 GVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGLNDGVVELQAR 551


>gi|296132879|ref|YP_003640126.1| prolyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031457|gb|ADG82225.1| prolyl-tRNA synthetase [Thermincola potens JR]
          Length = 579

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/262 (46%), Positives = 175/262 (66%), Gaps = 3/262 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH LMLR G I + + GIY++LPL  + +  V+ I+REE
Sbjct: 1   MRASEILAPTLREVPAEAEVISHILMLRAGFIRKSASGIYTYLPLANRVIKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR+D YG E+ RL DR+ ++   GPTHEE++TD+ R+
Sbjct: 61  MDRKGGQELILPIMQPAELWQESGRWDVYGDELFRLKDRHGRSFALGPTHEEIITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SYNKMF +
Sbjct: 121 EIRSYKQMPMLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLDESYNKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK-DFMDFPIPSENTD 238
           Y R+F R GLK  P+ A+SG IGG  +HEF+VLA++GE   V+C++ ++      +E   
Sbjct: 181 YTRVFSRCGLKFRPVEADSGAIGGSSTHEFMVLAESGEAAIVYCTECEYAANVEKAEACS 240

Query: 239 FDDIISLNSI-VEQWTAPYAAT 259
            D +  ++ + +E+   P A T
Sbjct: 241 VDTVTPMDMLPMEEVATPNART 262



 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 106/162 (65%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG IF  GTKYS  + A F   +GK+ Y+ MG YGIG  R VAA IE +HD  GI
Sbjct: 402 ARGIEVGQIFKLGTKYSKALGAKFLDENGKEQYIVMGCYGIGITRTVAAAIEQNHDQDGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+APF++ ++ + A      +  E+IY++L + G +V  DD  E+ G +F  ADL+
Sbjct: 462 IWPMSIAPFQVIVVPVSAKSSEQVELAERIYSQLLEAGIEVIIDDRNERPGVKFKDADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G+P++V VG+K V + +VE++ R TG   D+ +EEV+ Y  +
Sbjct: 522 GYPIRVTVGNKAVDEGRVEVRLRKTGDTRDLPVEEVVTYVKN 563


>gi|53803705|ref|YP_114445.1| prolyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|81823621|sp|Q606K3|SYP_METCA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53757466|gb|AAU91757.1| prolyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 583

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/224 (56%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G+I + + G+Y+WLPLG K L  V  ++REE
Sbjct: 1   MRTSQFPLNTLKEIPSDAEIVSHQLMLRAGLIRKLAAGLYTWLPLGLKVLRRVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR++ YG E+ RL DR+D+A   GPTHEE++TD+ R+
Sbjct: 61  MDRAGALEVLMPVVQPAELWQESGRWEQYGPELARLHDRHDRAFCLGPTHEEIITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E    +Y+ M+V+
Sbjct: 121 ELKSYRQLPVNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLDQESLAQTYDAMYVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+  P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSNIFSRLGLRFRPVLADTGAIGGSHSHEFHVLADSGEDAIAFS 224



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 102/165 (61%), Gaps = 3/165 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  GTKYS  ++AT    +G+   + MG YGIG  RVVAA IE +HD +GI
Sbjct: 416 ARGIEVGHIFQLGTKYSAALNATVLNEEGRSQVMLMGCYGIGVSRVVAAAIEQNHDERGI 475

Query: 339 IWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +WP+++APF+++L  IN++   +V R   E++YA LS  G +V +DD   + G  FA  +
Sbjct: 476 VWPEALAPFQVALCPINMQTSARV-RTTAERLYAELSAAGFEVLYDDRKVRPGVMFADME 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           L+G P ++++  + +    +E K R     + + ++ VI +   R
Sbjct: 535 LIGIPHRIVISERGLDSGALEYKGRRDADNQSIGIDGVIEFLRER 579


>gi|165977268|ref|YP_001652861.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|226731422|sp|B0BT03|SYP_ACTPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|165877369|gb|ABY70417.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 571

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/276 (47%), Positives = 173/276 (62%), Gaps = 10/276 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ Q KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQTQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
           + ++    V +  AP A     D  N K  + L E 
Sbjct: 237 EAVA----VGERQAPTAEMQLVDTPNAKTINELVEQ 268



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   + MG 
Sbjct: 382 VADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLVMTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSEELYRTLKA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++ +++
Sbjct: 502 QGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKDQL 561

Query: 435 INY 437
           + +
Sbjct: 562 LAF 564


>gi|126667243|ref|ZP_01738216.1| prolyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126628188|gb|EAZ98812.1| prolyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 576

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR G+I + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQLMLRAGLIRKLAAGLYTWLPMGLRTLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW ESGR+D YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDRSGAQELLMPAVQPAELWRESGRWDEYGGELLRMNDRHGREFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  F+QIQ KFRDE RPRFGVMR+REF+MKDAYSF +  E    +Y  M  +
Sbjct: 121 ELKSYKQLPANFFQIQTKFRDERRPRFGVMRAREFIMKDAYSFHINAESLDETYQLMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P++A+SG IGG  S EF VLA +GE  +  S
Sbjct: 181 YCAIFDRLGLDYRPVQADSGAIGGSGSQEFHVLASSGEDAIVFS 224



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/198 (36%), Positives = 111/198 (56%), Gaps = 3/198 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSA 300
           + L  +  Q   P     D+ N    D+ P  +      RGIEVGHIF  G KYS  ++A
Sbjct: 372 VHLTGVNWQRDLPLGRVEDLRNVVEGDASPCGQGTLEIRRGIEVGHIFKLGNKYSKALNA 431

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ- 359
           T    +GK   + MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H   
Sbjct: 432 TVLDENGKTATIYMGCYGIGVSRIVAASIEQNHDDRGIIWPDAIAPFRVAVVLLNGHKSP 491

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +A EK+Y +L + G DV  DD  E+ G +FA  +L G P + +V  + +    +E K
Sbjct: 492 TVAEAGEKLYQQLQEAGYDVLLDDRNERPGVKFADMELTGIPHRFVVSDRGLEAGTLEYK 551

Query: 420 HRLTGIREDMSLEEVINY 437
            R    ++D++L + IN+
Sbjct: 552 GRRDADKQDVALADAINF 569


>gi|254468329|ref|ZP_05081735.1| prolyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087139|gb|EDZ64422.1| prolyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 561

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 159/218 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P+DAE+ SH+LM+R G + + S G+Y+W+P+G + L  + +IIREE
Sbjct: 1   MKTSQFFISTLKEAPQDAELKSHQLMVRAGYVKRLSSGLYTWMPIGLRVLRKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+  +G +ML++ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNASGAVELLMPAIQPAELWQETGRWQQFGPQMLKINDRHQNEFCFGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF       +  Y  MF +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHANENCLQKMYELMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF R+GL+   + A+SG IGGD SHEF VLAD+GE
Sbjct: 181 YNRIFSRIGLQFRSVAADSGAIGGDASHEFHVLADSGE 218



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 1/160 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGHIF  G KYS  M A+    +GK   + MG YGIG  R+VAA IE ++D  G+
Sbjct: 397 CRGIEVGHIFQLGKKYSESMQASILNEEGKSQTMTMGCYGIGVSRIVAAAIEQNNDENGM 456

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P S+APF++ ++ I  H +   R    KIYA L K G DV  DD   + G  FA +DL
Sbjct: 457 ILPKSIAPFELIIVPIGYHKNDKVRAQANKIYADLLKSGIDVILDDRVARPGIMFAESDL 516

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P ++++G K ++++KVE K R     E +++ ++I++
Sbjct: 517 IGIPNRLVIGEKSLNENKVEFKSRSESNSEMINISDLIHF 556


>gi|332974215|gb|EGK11148.1| proline--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 570

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 158/218 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPAEASLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR++    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVVQPADLWKESGRWDFYGDELLRITDRHENPFCFSPTCEEMITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY I  KFRDE RPRFGVMR+REF+MKDAYSF    +  K +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHINTKFRDERRPRFGVMRAREFVMKDAYSFHADFDSLKETYQNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y R+F+RLGL   P+ A++G IGG  SHEF VLA++GE
Sbjct: 181 YCRVFNRLGLNFRPVAADTGSIGGTGSHEFQVLAESGE 218



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KYS  M+ATF   +GK   ++MG YGIG  R+VAA IE ++D +GI
Sbjct: 404 ARGIEVGHVFQLRDKYSKAMNATFLDNNGKSQIMEMGCYGIGVTRIVAAAIEQNNDERGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW D+++PF + ++  N K  D V + A +KIYA+L   G DV  DD  E+ G     ++
Sbjct: 464 IWTDAMSPFTVVIVPMNYKKSDDV-KAAADKIYAQLQAAGVDVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P +V++G + + +  VE   R     + +S+ +++
Sbjct: 523 LLGIPHRVVIGDRALKEGNVEYAQRRDTESQAISVNDIV 561


>gi|56475942|ref|YP_157531.1| prolyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|81821206|sp|Q5P7T1|SYP_AZOSE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56311985|emb|CAI06630.1| prolyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 583

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+  L+E P DAE+ S KLMLR G I + + GIYS+LP+G + +  V  I+R+E
Sbjct: 1   MRASQYFISTLKEAPSDAEVVSQKLMLRAGFIRKVAAGIYSYLPIGLRVIRKVEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR++  G EMLR  DR+ +     PT EEV+TDI R 
Sbjct: 61  MNRAGALELTMPLVQPAELWDETGRWEQMGAEMLRFKDRHQRDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDVAAAGRSYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE   V+C
Sbjct: 181 YCRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYC 224



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 3/186 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   A  RGIEVGH+FY GTKYS  M+ATF   +GK  + +MG Y
Sbjct: 394 ADLRNIIEGDPSPDGRGRLAIQRGIEVGHVFYLGTKYSQSMNATFLDENGKPKHFEMGCY 453

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           GIG  R++ A IE +HD +GIIWPD++APF++ +  +        R    K+Y  L   G
Sbjct: 454 GIGVTRILGAAIEQNHDARGIIWPDAIAPFRVVVCPVGWGKSDAVRTEATKLYETLCAGG 513

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G  FA  +L+G P +V++G + + D   E + R       + L E+  
Sbjct: 514 IDVILDDRDERPGVMFADWELIGVPHRVVIGDRGLKDGMAEYQGRRDAEAAKIPLAELAA 573

Query: 437 YASHRF 442
           +   + 
Sbjct: 574 FVGSKL 579


>gi|33598297|ref|NP_885940.1| prolyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|81836505|sp|Q7W481|SYP_BORPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33566855|emb|CAE39070.1| prolyl-tRNA synthetase [Bordetella parapertussis]
          Length = 576

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 158/218 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL L+   + A++G IGG  SHEF V+ADTGE
Sbjct: 181 YQRIFQRLSLEFRAVAADTGSIGGSRSHEFQVIADTGE 218



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGH+F+ GTKYS  + ATF   +GK   +QMG 
Sbjct: 387 VADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++AP+++ +  +     +  RD    +Y  L   
Sbjct: 447 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVICPVGWGKSETVRDTALALYEALRAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD   + G  FA  +L+G PL+V VG + +++  VE++ R
Sbjct: 507 GVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGLNEGVVELQAR 552


>gi|83746821|ref|ZP_00943869.1| Prolyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83726590|gb|EAP73720.1| Prolyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 626

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 53  MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 112

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 113 MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 172

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 173 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 232

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +  S +
Sbjct: 233 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYSPE 278



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 434 PEAEVADLRNVVEGDPSPDGKGSLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 493

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 494 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 553

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R
Sbjct: 554 LAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGR 603


>gi|325982765|ref|YP_004295167.1| prolyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532284|gb|ADZ27005.1| prolyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 569

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFVSTLKEAPAEAELISHKLMLRAGLIKRLGSGLYTWMPLGLRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR+     +GPTHEE++TD  R 
Sbjct: 61  MNSSGAVEILMPAIQPAELWQETGRWDVFGLQMLKIKDRHKHDFCFGPTHEEIITDTVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +    +Y  M+ +
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHTNEDSLMQTYQLMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R+GL+   + A++G IGG  SHEF VLAD+GE  + FC
Sbjct: 181 YSRIFTRIGLQFRAVSADTGAIGGSGSHEFHVLADSGEDAIAFC 224



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 5/181 (2%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D+ P+ K +    RGIEVGHIF   TKYS  M ATF    G   Y++MG YG
Sbjct: 382 DIRNVVPGDASPDGKGILEICRGIEVGHIFQLRTKYSKIMKATFLDESGSTQYMEMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVG 376
           IG  R+VAA IE +HD  GII+P ++APF++++I I  + + QV ++  EK+Y +     
Sbjct: 442 IGVSRIVAAAIEQNHDEYGIIFPAAIAPFQLAIIPIGLQKNPQV-KEIVEKLYQQFLDAH 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P ++++G + +  S +E + R     E + ++E+  
Sbjct: 501 IEVLLDDRDERPGVMFADMELMGIPHRIVIGERGLKQSTIEYQGRKDRSPEAIFIDEIFP 560

Query: 437 Y 437
           +
Sbjct: 561 F 561


>gi|207721477|ref|YP_002251917.1| prolyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206586637|emb|CAQ17223.1| prolyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 574

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 121 EIRSYKQMPVNFYQIQNKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +  S +
Sbjct: 181 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYSPE 226



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 382 PEAEVADLRNVVEGDPSPDGKGSLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R
Sbjct: 502 LVAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGR 551


>gi|269119306|ref|YP_003307483.1| prolyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613184|gb|ACZ07552.1| prolyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 571

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/284 (46%), Positives = 181/284 (63%), Gaps = 9/284 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+   +E P++AE+ SHKLMLR  MI + + G+YS+LPLG + L  V  I+REE
Sbjct: 1   MRLSKAFVKTYKEAPKEAEVISHKLMLRASMIKRLASGVYSYLPLGNRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P LQ ADLW ESGR+ +YG E++R+ DR+++    GPTHEEV+TDI R+
Sbjct: 61  MDKSGAQEVFMPVLQPADLWKESGRWIAYGPELMRMKDRHEREFALGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     Y  M  +
Sbjct: 121 EINSYKDLPMNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTTHESLDEEYLNMKTT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSE---- 235
           Y  IF R GL    + A+SG IGGD++HEF+VLA++GE  V +C  D  D+    E    
Sbjct: 181 YENIFTRCGLDFRAVEADSGSIGGDVTHEFMVLAESGEDDVLYC--DSCDYAANKEKATS 238

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             DF +       +E    P   T  + +   F ++P +K V A
Sbjct: 239 KADFKESDEEAKSIELVETPNTWT--IEDVAAFFNIPTSKTVKA 280



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 7/191 (3%)

Query: 256 YAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y  T D+   K  +  P        ARGIEVGHIF  GTKYS  M A     +GK   ++
Sbjct: 382 YDMTGDIREAKEGEKCPRCGGTLKIARGIEVGHIFELGTKYSEAMKANVLDENGKQATLK 441

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYAR 371
           MG YGIG  R+++A IE ++D  GIIWP ++AP+++ +I  NIK  DQV     E +Y  
Sbjct: 442 MGCYGIGVSRIMSAAIEQNYDENGIIWPVNIAPYEVDVIIPNIKDKDQV--RVAEDVYQL 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L     DV  DD  E+ G +F  ADL+GFP+++I G K +++ KVE+K R TG  E + +
Sbjct: 500 LKDHNIDVILDDRDERAGFKFKDADLIGFPMKIITG-KSIAEGKVEVKDRKTGNTEIVEI 558

Query: 432 EEVINYASHRF 442
             +++Y  +  
Sbjct: 559 GTLLDYVKNHL 569


>gi|196008377|ref|XP_002114054.1| hypothetical protein TRIADDRAFT_58133 [Trichoplax adhaerens]
 gi|190583073|gb|EDV23144.1| hypothetical protein TRIADDRAFT_58133 [Trichoplax adhaerens]
          Length = 473

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 247/454 (54%), Gaps = 36/454 (7%)

Query: 4   SKYFLPILQENPRDAE--IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           S  F+P+++ + + A   ++   ++   G++ Q   G+Y  LP+  +A+  +  ++ EE 
Sbjct: 33  SSLFIPMMRTSDQSASASVSRKTILENAGLLKQSRPGLYYILPVALRAMYKLIKVVDEEM 92

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G  ++  P L  ADLW  SGR+D+ G EM +L DR+++    GPTHEE ++++  ++
Sbjct: 93  TRIGGSKLGTPCLIPADLWQSSGRWDTLGAEMFKLKDRHNRHYCLGPTHEESISELVGTY 152

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + S   +P   YQI  KFRDE+RPR G+ R+REF MKD YSFD+  E S +SY  +  +Y
Sbjct: 153 LNSKNMMPLRLYQIDRKFRDEIRPRLGLRRAREFWMKDMYSFDIDKEASLNSYEIICEAY 212

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLGL  + + A+SG +GGD SHEF ++AD GE                     D+
Sbjct: 213 VRIFNRLGLNVVKVVADSGAMGGDTSHEFHLIADDGE---------------------DE 251

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-RGIEVGHIFYFGTKYSLPMSA 300
           I+  +   +        + DV  E       +NK +   RG+E+GH FY GTKYS   S 
Sbjct: 252 ILICDQCHKAMNMETLKSGDVMAECNLCEGKQNKNIQKYRGVEIGHAFYLGTKYSKAASV 311

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---- 356
           T+   +    YV+MGSYGIG  R++ A +E       I WP  + P+ I ++ + +    
Sbjct: 312 TYTDENNCKVYVEMGSYGIGVTRLLDAALEVQSTCNKIRWPSVITPYNICIVPLGSPKDN 371

Query: 357 HDQVCRDACEKIYARLS--KVGCDVFWDD---MGEQI--GSQFAVADLLGFPLQVIVGSK 409
             Q      +++Y +L+  K+  +V  DD   + + +  G++   A LLG+P  +I+G +
Sbjct: 372 SSQQLLQLAQQLYDKLAVGKLQNEVVIDDRIYLSKTVGPGTRLRQATLLGYPYLIILGKQ 431

Query: 410 FVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
            +     +E++ +L G ++++ ++ ++++    +
Sbjct: 432 ALQKQGYIELEDQLNGSKQNIHIDNIVDHIQQVY 465


>gi|301629493|ref|XP_002943874.1| PREDICTED: prolyl-tRNA synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 657

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 161/226 (71%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLMLR G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMLRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E ++P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAAECAMPVVQPAELWQETGRFEKMGPELLRIKDRHDRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  +K SY  M  +
Sbjct: 121 ELRSYKQLPRNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPASAKASYQVMAAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE   V+C +
Sbjct: 181 YCRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQ 226



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            +D+ N    D  P+   +    R IEVGH+FY GTKYS  M ATF G DGK  ++
Sbjct: 393 VADLRNVVAGDKSPDGAGELCIERAIEVGHVFYLGTKYSKAMGATFLGEDGKPAFL 448


>gi|229086371|ref|ZP_04218548.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696983|gb|EEL49791.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 566

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/253 (49%), Positives = 167/253 (66%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSRLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFSRCGLNFRAVIADSGAMGGKDTHEFMALSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVASYT 243



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKMKPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY+ L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREVGETIYSSLQEQGYEVLLDDRTERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R T    ++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEELHTYIAN 563


>gi|163854968|ref|YP_001629266.1| prolyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|226699121|sp|A9I4I5|SYP_BORPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163258696|emb|CAP40995.1| proS [Bordetella petrii]
          Length = 576

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  + AI+R E
Sbjct: 1   MRASTYHLNTLKEAPAEAEVASHRLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEAIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MDAAGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+KM+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQQSYDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  + D
Sbjct: 181 YMRIFERLGLQFRAVAADTGSIGGSRSHEFQVIADTGEDLLVYNPD 226



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+   +    RGIEVGH+F+ GTKYS  + ATF    GK   +QMG 
Sbjct: 387 VADLRNVVEGDPAPDGAGRLAIQRGIEVGHVFFLGTKYSEALKATFLDETGKPALLQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+  A IE +HD +GIIWP ++APF++ +  +    ++  R+   K+Y  L   
Sbjct: 447 YGIGITRIAGAAIEQNHDERGIIWPRAIAPFEVVICPVGWGKNETVRNESVKLYDALRAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD   + G  FA  +L+G PL+V VG + ++D  VE++ R
Sbjct: 507 GVDVILDDRDARPGVMFAEWELIGVPLRVTVGERGLNDGVVELQAR 552


>gi|300690369|ref|YP_003751364.1| proline--tRNA ligase [Ralstonia solanacearum PSI07]
 gi|299077429|emb|CBJ50055.1| Proline--tRNA ligase [Ralstonia solanacearum PSI07]
          Length = 574

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 163/226 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYGKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   + A++G IGG  SHEF V+A+TGE  +  S +
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYSPE 226



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 382 PEAEVADLRNVVEGDPSPDGKGALALCRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGR 551


>gi|194207413|ref|XP_001492689.2| PREDICTED: prolyl-tRNA synthetase 2, mitochondrial (putative)
           [Equus caballus]
          Length = 472

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 218/410 (53%), Gaps = 34/410 (8%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+    D    S +LML+ G+IH  S G Y  LP   +AL+ +  +I +E    G  
Sbjct: 53  VPSLEGGSGDLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRALEKLVRVIDQEMRAIGGQ 112

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYR 126
           ++S+P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S    SY+
Sbjct: 113 KVSMPSLSPAELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAVTALVASQKTLSYK 172

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y  +  +Y  +F 
Sbjct: 173 QLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARQTYGLVCDAYSSLFA 232

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           RLGL  + ++A  G IGG +SHEF + AD GE Q         F +    +   ++ +LN
Sbjct: 233 RLGLPCVKVQAGVGSIGGTMSHEFQLPADVGEDQ---------FAVCPSCSFSANVETLN 283

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             + Q   P                 +      +GIEVGH FY GTKYS   +A F    
Sbjct: 284 --LSQTNCPAC---------------QGPLTETKGIEVGHTFYLGTKYSSVFNAQFTNVH 326

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDA 364
           GK    +MG YG+G  R++AA IE       + WP  +AP+++ LI  K  + ++V  + 
Sbjct: 327 GKPSLAEMGCYGLGVTRILAAAIEVLSTEYCLRWPGLLAPYQVCLIPPKKGSKEEVATEL 386

Query: 365 CEKIYARLS----KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSK 409
              +Y  ++    ++  +V  DD     IG++   A+  G+P  +I G +
Sbjct: 387 AGHLYDHITEAVPQLRGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKR 436


>gi|104783084|ref|YP_609582.1| prolyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123380820|sp|Q1I6D7|SYP_PSEE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|95112071|emb|CAK16798.1| prolyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 571

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHDRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLASSGEDDVIFS 224



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 112/192 (58%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +     G +GK   +
Sbjct: 378 PVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEALKCQVLGENGKPVVL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++    V R+A +K+YA L
Sbjct: 438 SMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYETDVVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +E KHR     + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNLEYKHRTESEAQALP 557

Query: 431 LEEVINYASHRF 442
           L EV+ +   R 
Sbjct: 558 LNEVLTFLQARI 569


>gi|254516715|ref|ZP_05128774.1| prolyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219675138|gb|EED31505.1| prolyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 571

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +   +E P DAEI SH+LMLR G+I + S G+Y+W+P+G K L  V  ++REE
Sbjct: 1   MRSSEFLITTHKETPADAEIVSHRLMLRAGLIRKLSSGLYTWMPMGLKVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+EM++P +Q A+LW ESGR++ YG E+LR+ DR+++    GPTHEEV+TDI R+
Sbjct: 61  MDAAGALEMAMPMVQPAELWQESGRWEQYGPELLRIQDRHNRDFCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K RDE+RPRFG+MR+REFLMKDAYSF       + +Y  M  +
Sbjct: 121 EISSYKQLPLNLYQIQNKVRDEIRPRFGIMRAREFLMKDAYSFHSDQASLEETYQVMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R+F RLGL   P+ A+SG IGG+ SHEF VLAD+GE  +  S
Sbjct: 181 YSRVFERLGLDFRPVMADSGSIGGNTSHEFHVLADSGEDAIAFS 224



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 94/143 (65%), Gaps = 1/143 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M+A     +G++  + MG YGIG  R+VAA IE +HD +GII
Sbjct: 404 RGIEVGHIFQLGTKYSEAMNARVLDENGRNVTISMGCYGIGVSRIVAAAIEQNHDDRGII 463

Query: 340 WPDSVAPFKISLINIKAHDQVC-RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP+++ PF+++++ +  H      +A E ++A+  + G DV  DD  E+ G +FA  +LL
Sbjct: 464 WPNAMTPFQLAIVPLNMHKSTAVAEAAEALHAQCLEEGIDVLMDDRNERPGVKFADMELL 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P ++++G + +++ ++E + R
Sbjct: 524 GIPHRIVIGDRSLAEGELEYQGR 546


>gi|310779485|ref|YP_003967818.1| prolyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748808|gb|ADO83470.1| prolyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 570

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  ++  L+E P+DAE+ SHKLMLR GMI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MKFSNLYVKTLKETPKDAEVISHKLMLRAGMIKKLASGVYTYLPLGYKALRKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+ E+ +P LQ +++W ESGR+D+ G EM+R+ DR+D+  + GPTHEEV+TDI R+
Sbjct: 61  MERAGSQEIFMPVLQPSEIWQESGRWDTMGPEMMRIKDRHDREFVLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQIQ KFRDE RPRFG+MRSREFLMKDAYSF  + E   + +  M  +
Sbjct: 121 DISSYKSLPMNLYQIQTKFRDERRPRFGLMRSREFLMKDAYSFHASEECLDNEFENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GLK   + A+SG IGG  S EF VLA++GE + ++C
Sbjct: 181 YTRIFERCGLKFRSVEADSGAIGGSGSQEFHVLAESGEDEIIYC 224



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GH+F  GTKYS  M ATF   +GK + + MG YGIG  R  AA IE ++D  G
Sbjct: 404 SARGIETGHVFKLGTKYSESMKATFLDVNGKSNVMMMGCYGIGVSRTTAAAIEQNYDENG 463

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+ + ++  N+K  DQV     EKIY  L + G D   DD  E+ G +F  A
Sbjct: 464 IIWPSAIAPYVVDVVPANMKNKDQVA--LGEKIYTELLEAGIDTVLDDRNERPGFKFKDA 521

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DL+GFP +V+ G K  ++  +EIK R TG   D+  EEV+ 
Sbjct: 522 DLIGFPFKVVSG-KQAAEGIIEIKIRKTGETLDVKSEEVVT 561


>gi|253583421|ref|ZP_04860619.1| proline-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251833993|gb|EES62556.1| proline-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 569

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AE ASHKL+LR GMI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MRFSKSYIKTLKETPKEAETASHKLLLRAGMIKKLTSGVYTYLPLGYKALRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G+ E+ +P LQ A+LW ESGR+D  G  M++L DRN +  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGSQEILMPVLQPAELWKESGRWDVMGPLMMKLQDRNKRDFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP + YQIQ KFRDE+RPRFG+MR REF+MKD YSF  T E     +  M  +
Sbjct: 121 DISSYKSLPLSLYQIQTKFRDEIRPRFGLMRGREFVMKDGYSFHATVESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GLK  P+ A+SG IGG  S EF VLAD+GE + ++C
Sbjct: 181 YSRIFSRCGLKFRPVEADSGAIGGSGSQEFHVLADSGEDEIIYC 224



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVGHIF  G KYS  M+ATF    G+   + MG YGIG  R +A+ IE ++D  G
Sbjct: 403 SARGIEVGHIFKLGDKYSKAMNATFLDDKGESKVMIMGCYGIGVSRTLASAIEQNNDEFG 462

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+ + +I  NIK  +QV     E+IY  L   G +   DD  E+ G +F  A
Sbjct: 463 IIWPTALAPYIVDVIPANIKNEEQV--KVAEEIYEALLNDGIEAMIDDRDERPGFKFKDA 520

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DL+GFP +V+ G K   +  VE+K R TG   ++S ++V++
Sbjct: 521 DLIGFPFKVVSGKK-AGEGIVELKIRRTGETIELSKDDVVS 560


>gi|188587611|ref|YP_001919651.1| prolyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|226699131|sp|B2UY89|SYP_CLOBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188497892|gb|ACD51028.1| prolyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 570

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFC++
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTE 226



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 2/176 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S+   K   +RG EVGHIF  GTKYS  M A F   +GK+    MG YGIG  R +A++I
Sbjct: 392 SICGGKLTISRGTEVGHIFKLGTKYSEAMDAKFIAENGKEAPFIMGCYGIGVTRTMASII 451

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  +D  GI+WP +VAP+ +S+I +   D+       K+Y  L  +G +   DD  E+ G
Sbjct: 452 EQHNDESGIVWPLAVAPYHVSVIAVNVKDEEQVKIATKLYEDLKSIGVEALLDDRNERAG 511

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +F  ++++G P+++ VG K V D +VE K R TG  E + +E+V       F  N
Sbjct: 512 VKFKDSEIMGIPMRITVGKKIV-DGEVEFKLR-TGDMEVVKIEDVCQIVKGEFDKN 565


>gi|114152232|sp|Q3IGT7|SYP_PSEHT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 574

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  AIEM +P +Q ADLW ESGR+D +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MNKANAIEMLMPVIQPADLWEESGRWDEFGPELMRFTDRHNRTFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K RDE RPRFGVMR+REF MKDAYSF L+ E    +Y  M  +
Sbjct: 121 EISSYKQLPISLYQIQTKVRDERRPRFGVMRAREFTMKDAYSFHLSDECLDATYQVMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RL L   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YCNIFERLNLDYRPVIADTGSIGGSVSHEFHVLAESGEDAIAFS 224



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 1/158 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M A      GK+  + MG YGIG  R+VAA IE ++D  GII
Sbjct: 409 RGIEVGHIFQLGTKYSQAMKAGVLNESGKNQIMTMGCYGIGVSRIVAAAIEQNNDQYGII 468

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +APF ++++ +  H      D    +Y  L   G DV +DD  E+ G  F   +L+
Sbjct: 469 WPQPIAPFDLAIVPMNMHKSHRIPDIATNLYQGLKDAGLDVLFDDRKERPGVMFNDMELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  +++G + + ++KVE+K+R TG +  + ++  I+
Sbjct: 529 GVPFTLVIGERNLDENKVELKNRRTGEKLMIDIDTAID 566


>gi|124265710|ref|YP_001019714.1| prolyl-tRNA synthetase [Methylibium petroleiphilum PM1]
 gi|152112930|sp|A2SD40|SYP_METPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124258485|gb|ABM93479.1| prolyl-tRNA synthetase [Methylibium petroleiphilum PM1]
          Length = 581

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIYS++P+G + +  V AIIREE
Sbjct: 1   MKASQFFVSTLKEAPADAEITSHKLMMRAGMIKRLGAGIYSYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++  G E++R+ DR+D+  I  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRFEKMGPELMRVKDRHDRDFIIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FY IQ KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELRSYRQLPKNFYHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAAAGRSYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL    + A++G IGGD SHEF V+A+TGE   V+C
Sbjct: 181 YGRIFDRFGLSYRAVAADTGAIGGDRSHEFQVIAETGEDAIVYC 224



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 112/190 (58%), Gaps = 5/190 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N  + D  P+ K V A  RGIEVGH+FY GTKYS  M+AT+    GK   ++MG 
Sbjct: 393 VADIRNAVVGDPSPDGKGVLAIQRGIEVGHVFYLGTKYSAAMNATYLDETGKPRLMEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC--RDACEKIYARLSK 374
           YGIG  R++ A IE  HD +GI+WP ++APF++ +  I  +D+    R A + ++  L  
Sbjct: 453 YGIGVTRILGAAIEQRHDARGIVWPTAIAPFEVVICPI-GYDRSAEVRQAADTLHDELQA 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G D+  DD GE+ G+ FA  +L+G P +V++  + + + +VE++ R       +++ EV
Sbjct: 512 LGMDLMLDDRGERPGAMFADWELIGIPQRVVISDRGLKEGQVELQGRQEAEAGKLAVAEV 571

Query: 435 INYASHRFSN 444
           +     R  +
Sbjct: 572 VAQLRARLRD 581


>gi|251778178|ref|ZP_04821098.1| proline--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082493|gb|EES48383.1| proline--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 570

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFC++
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTE 226



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 2/176 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S+   K   +RG EVGHIF  GTKYS  M A F   +GK+    MG YGIG  R +A++I
Sbjct: 392 SICGGKLTISRGTEVGHIFKLGTKYSEAMDAKFIAENGKEAPFIMGCYGIGVTRTMASII 451

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  +D  GI+WP +VAP+ +S+I +   D+       K+Y  L  +G +   DD  E+ G
Sbjct: 452 EQHNDESGIVWPLAVAPYHVSVIAVNVKDEEQVKIATKLYEDLKSIGVEALLDDRNERAG 511

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +F  ++++G P+++ VG K V D +VE K R TG  E + +E+V       F  N
Sbjct: 512 VKFKDSEIMGIPMRITVGKKIV-DGEVEFKLR-TGDMEVVKIEDVCQIVKGEFDKN 565


>gi|121635048|ref|YP_975293.1| prolyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|152112936|sp|A1KUG4|SYP_NEIMF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120866754|emb|CAM10507.1| prolyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325138239|gb|EGC60808.1| prolyl-tRNA synthetase [Neisseria meningitidis ES14902]
          Length = 570

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 180/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERTAAQAELTKVHTPNVKTIESLVE 268



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDAV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 561


>gi|119504253|ref|ZP_01626333.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119459761|gb|EAW40856.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 569

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G+I + + GIY+W+PLG + +  V  ++REE
Sbjct: 1   MRASQFLLSTLKETPADAEIISHQLMLRAGLIRRVAAGIYNWMPLGLRVIRRVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+S+P +Q A+LW+ESGR++ YG E+ RL DR+++    GPTHEE++T + RS
Sbjct: 61  MCRAGALEISMPVVQPAELWLESGRWEQYGPELARLQDRHNRDFCLGPTHEEIITALGRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y +M  +
Sbjct: 121 EIKSYKQLPLNFFQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHADQVSLEQTYWRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    + A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YTAIFTRLGLNFRSVEADTGSIGGSHSHEFHVLADSGEDAIAFS 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 108/182 (59%), Gaps = 3/182 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T+D+      D+ P  +      RGIEVGHIF  GTKYS  M A     +GK   +
Sbjct: 376 PLIETADIREVIAGDASPCGQGALEIRRGIEVGHIFQLGTKYSEAMKAVVLNDEGKSVPM 435

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++L+ +     +    A E +Y +
Sbjct: 436 AMGCYGIGVTRIVAAAIEQNHDDQGIIWPDAMAPFEVALVPLNMDKSEAVATATEALYEQ 495

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L  +G +VF DD  E+ G +FA  +L+G P++V +G + +++  +E++ R +  ++ + +
Sbjct: 496 LLTMGVEVFMDDRKERPGVKFAQMELIGIPVRVTLGDRSLAEGNIELQERTSDQKQLIPV 555

Query: 432 EE 433
            E
Sbjct: 556 SE 557


>gi|187933014|ref|YP_001884453.1| prolyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|226699132|sp|B2TIF5|SYP_CLOBB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187721167|gb|ACD22388.1| proline--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 570

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFC++
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTE 226



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 2/167 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RG EVGHIF  GTKYS  M A F   +GK+    MG YGIG  R +A++IE  +D  GI
Sbjct: 401 SRGTEVGHIFKLGTKYSEAMDAKFIAENGKEAPFIMGCYGIGVTRTMASIIEQHNDENGI 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAP+ +S+I +   D+       K+Y  L  +G +   DD  E+ G +F  ++++
Sbjct: 461 VWPLAVAPYHVSVIAVNVKDEEQVKIATKLYEDLKSMGVEALLDDRNERAGVKFKDSEIM 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P+++ VG K V D +VE K R+ G  E + +E+V       F  N
Sbjct: 521 GIPMRITVGKKIV-DGEVEFKLRI-GDMEVVKIEDVCQMVKGEFDKN 565


>gi|254805135|ref|YP_003083356.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668677|emb|CBA06388.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 570

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 180/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERTAAQAELTKVHTPNVKTIESLVE 268



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 561


>gi|77164414|ref|YP_342939.1| prolyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|254434306|ref|ZP_05047814.1| prolyl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|114152222|sp|Q3JCN7|SYP_NITOC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76882728|gb|ABA57409.1| Prolyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207090639|gb|EDZ67910.1| prolyl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 574

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/221 (54%), Positives = 157/221 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR   I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGSFIRRLAAGLYTWLPLGLRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPAVQPAELWRETGRWEQYGPELLRFTDRHQRFFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQLKFRDE+RPRFGVMRSREFLMKDAYSF         +YN+M+ +
Sbjct: 121 EIRSYKQLPANFYQIQLKFRDEIRPRFGVMRSREFLMKDAYSFHPDQTSLAQTYNQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R+GL    ++A++G IGG  SHEF VLA +GE  +
Sbjct: 181 YSRIFDRIGLTFRAVQADTGAIGGKTSHEFHVLAASGEDAI 221



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 3/185 (1%)

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P  +T+D+ N    D  P  E     ARGIEVGHIF  G KYS  M+AT     G+   +
Sbjct: 377 PEPSTADIRNVVDGDPSPDGEGTLSIARGIEVGHIFQLGEKYSQAMNATVLDETGRAISL 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD  GIIWP S+APF+++L+ I AH     ++  +++Y  
Sbjct: 437 AMGCYGIGVSRVVAAAIEQNHDEHGIIWPASIAPFQLALVPINAHKSARVKEMSDRLYTE 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD   + G  FA  DL+G P ++++  + + ++ VE K R  G    + L
Sbjct: 497 LQAAGFEVLLDDRQLRPGVIFADMDLIGIPYRLVISERGLENNTVEYKRRQDGKTCAIQL 556

Query: 432 EEVIN 436
           +  I+
Sbjct: 557 DNFIS 561


>gi|88860213|ref|ZP_01134852.1| prolyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88818207|gb|EAR28023.1| prolyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 573

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 159/221 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V AI+R+E
Sbjct: 1   MRTSQYILATLKEVPSDAEIISHQLMLRAGMIRRLASGLYTWLPSGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GAIEM +P +Q ADLW+ESGR++ +G E+LR+ DR+++    GPTHEEV+T+  R 
Sbjct: 61  MEKAGAIEMLMPVIQPADLWIESGRWEQFGPELLRIKDRHNREFALGPTHEEVITEFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ K RDE+RPRFGVMR+REF MKDAYSF L+ E   ++Y  M  +
Sbjct: 121 EVSSYKQLPLNLFQIQTKVRDEVRPRFGVMRAREFTMKDAYSFHLSDECLANTYAIMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  +F R+GL+  P+ A++G IGG +SHEF VLA++GE  +
Sbjct: 181 YCNVFERIGLEYRPVIADTGSIGGSVSHEFHVLAESGEDAI 221



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 1/143 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M A      GK+  + MG YGIG  R+VAA IE + D KGI+
Sbjct: 409 RGIEVGHIFQLGTKYSDAMKAGVLNETGKNQIMTMGCYGIGVSRIVAAAIEQNFDAKGIV 468

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ +  H         E+IY  L   G +V +DD  E+ G  F   +L+
Sbjct: 469 WPKAIAPFQIAIVPMNMHKSHRIPAVAERIYQELKAAGIEVLFDDRKERPGVMFNDMELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P  +++G + + D+ VE K R
Sbjct: 529 GIPHTLVIGERNLDDNCVEYKSR 551


>gi|308389457|gb|ADO31777.1| prolyl-tRNA synthetase [Neisseria meningitidis alpha710]
 gi|325130423|gb|EGC53187.1| prolyl-tRNA synthetase [Neisseria meningitidis OX99.30304]
 gi|325201951|gb|ADY97405.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240149]
          Length = 570

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 180/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERTAAQAELTKVHTPNVKTIESLVE 268



 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 561


>gi|212639527|ref|YP_002316047.1| prolyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212561007|gb|ACJ34062.1| Prolyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 568

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 127/264 (48%), Positives = 175/264 (66%), Gaps = 7/264 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+L+LR G I Q++ G+YS+LPLG++ L  + AIIREE
Sbjct: 5   MKQSMSFIPTLREVPADAEIKSHQLLLRAGFIRQNASGVYSFLPLGKRVLQKIEAIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ A+LW ESGR+ SYG E++RL DR+++    G THEEV+T + R 
Sbjct: 65  MERAGAVELLMPALQQAELWQESGRWYSYGPELMRLKDRHERDFALGATHEEVITALVRD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     YNKM+ +
Sbjct: 125 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASHESLDEVYNKMYEA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL    + A+SG +GG  +HEF+VL+D GE  +  S D  D+   + N +  
Sbjct: 185 YANVFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYS-DSSDY---AANIEMA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHN 264
            +I   +  E+   P+A    VH 
Sbjct: 241 PVI---TTYERSDEPHAPLEKVHT 261



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 22/242 (9%)

Query: 200 GPIGGDLSHEFIVLADTGETQVF---CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           GPIG  + ++ +VLAD     +    C  +   +     N D D           + A Y
Sbjct: 338 GPIG--VRNDVLVLADHAVKAIVNGVCGANEAHYHYKGVNPDRD-----------FVAQY 384

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   DV   +  D  P+ K     ARGIEVGH+F  GT+YS  M+AT+   +G+   + M
Sbjct: 385 A---DVRFIQEGDPSPDGKGTIRFARGIEVGHVFKLGTRYSEAMNATYLDENGRTQPMIM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +AA+ E  +D  G+IWP +VAPF + LI++       R+  ++ Y +L +
Sbjct: 442 GCYGIGVSRTLAAIAEQYNDEHGLIWPTAVAPFHVHLISVNPKVDEQRELADEWYVQLQQ 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G +FA +DL+G P++V VG K  S+  VE+K R TG  E++ + ++
Sbjct: 502 EGFEVLYDDRAERPGVKFADSDLIGLPVRVTVG-KRASEGIVEVKVRKTGETEEVHVSQL 560

Query: 435 IN 436
           + 
Sbjct: 561 VE 562


>gi|115638543|ref|XP_783415.2| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) isoform 1 [Strongylocentrotus
           purpuratus]
 gi|115931464|ref|XP_001186319.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Strongylocentrotus
           purpuratus]
          Length = 569

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 230/447 (51%), Gaps = 46/447 (10%)

Query: 2   RRSKYFLP--ILQENPR--DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           R SK + P  +L E  +  D +  SH+LM+  G+I Q S G +  LPL  +AL+ +  +I
Sbjct: 137 RVSKMYQPSFVLPEGSKVADVKCKSHRLMMEAGLIRQASPGTFHLLPLAMRALEKLIKVI 196

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
             E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     GPTHEE +TDI
Sbjct: 197 DTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCLGPTHEEAVTDI 256

Query: 118 FRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
                  S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD   EG++ +Y  
Sbjct: 257 VAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDSNLEGAEETYRS 316

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSE 235
           +  +Y RIF  L L  +     +G IGG  SHEF +L++ GE  V+ CS+          
Sbjct: 317 VCEAYQRIFSILDLPIVQAVGATGAIGGSFSHEFHLLSEIGEDHVYHCSR---------- 366

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                        V Q T     +   H      S P+      +GIEVGH F  GTKYS
Sbjct: 367 ---------CGYAVNQETVEGVPSCPDH-----PSTPDCNMSLRQGIEVGHAFLLGTKYS 412

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-- 353
               A F   DGK    +MG YG+G  R++AA IE     K I WP  +AP+++ +++  
Sbjct: 413 KTFKADFYDKDGKPRLAEMGCYGLGVTRILAAAIEVLSSEKEIRWPQIIAPYQVCIVSPK 472

Query: 354 --------IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
                   I   + + +D C  +      +  D+  DD G   IG +   A  +G+PL V
Sbjct: 473 EGGAERSAIHLAEWLYQDVCLHV----PHLAADLLLDDRGHMTIGRRVKDAAHVGYPLIV 528

Query: 405 IVGSKFV-SDSKVEIKHRLTGIREDMS 430
           +VG + + +D K E+ +  +G  E +S
Sbjct: 529 VVGKRALEADPKFEVINTASGSTEYLS 555


>gi|94498868|ref|ZP_01305406.1| prolyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94428500|gb|EAT13472.1| prolyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 584

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E+P DA + SH+LMLR GMI + + G+Y+WLPLG K L  V  ++REE
Sbjct: 1   MRASQYLVATLKESPSDAVVVSHQLMLRAGMIRKLASGLYTWLPLGLKTLRKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q A+LW ESGR+  YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGAQEVLMPAVQPAELWEESGRWFEYGGELLRLKDRHNRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREF+MKDAYSF +  +  + +Y++M  +
Sbjct: 121 ELNSYKQLPSNFYQIQTKFRDETRPRFGVMRSREFIMKDAYSFHIDGDSLQQTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YTNIFTRLGLDFRPVAADTGSIGGAVSHEFHVLAQSGEDDIAFS 224



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 95/147 (64%), Gaps = 7/147 (4%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A     +GK+  + MG YGIG  RVVAA IE +HD +GII
Sbjct: 414 RGIEVGHIFQLGTKYSEALGAKVLDENGKEKTMMMGCYGIGVSRVVAAAIEQNHDDRGII 473

Query: 340 WPDSVAPFKISLINIKAHDQVCRDAC---EKIYARLSKVGCDVFWDDMGEQI--GSQFAV 394
           WP+++APF++S++ I A  Q   D     E++Y  L+ +G DVF DD  ++   G +FA 
Sbjct: 474 WPEAIAPFQVSIVQIDA--QKSEDVVKYSEELYESLTALGVDVFLDDRDKKTSPGVKFAD 531

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++L+G P +V++ S+ +   K E KHR
Sbjct: 532 SELMGIPHRVVLSSRGLKAGKAEYKHR 558


>gi|241760072|ref|ZP_04758170.1| proline--tRNA ligase [Neisseria flavescens SK114]
 gi|241319526|gb|EER55956.1| proline--tRNA ligase [Neisseria flavescens SK114]
          Length = 595

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 26  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 86  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 146 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQNMYDA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGLK  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 206 YCRIFTRLGLKFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 261

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 262 PTLPLKG---ERAAAQAELTKVHTPNVKTIESLVE 293



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 429 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 488

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W  ++APF++ ++  N K  + V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 489 VWTKAMAPFEVVIVPMNYKKSEAV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 547

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ EV+
Sbjct: 548 LLGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAVSEVV 586


>gi|269123109|ref|YP_003305686.1| prolyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314435|gb|ACZ00809.1| prolyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 574

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+   +E P++AE  SH+LMLR  MI Q ++G+Y++LPLG K L  +  I+REE
Sbjct: 1   MRFSKSFIKTYKEVPKEAETISHQLMLRASMIKQLTRGVYTYLPLGLKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  A E+ +P LQ ADLW ESGR+ SYG E++RL DRN++  + GPTHEEV+ D+FR+
Sbjct: 61  LNKINAQEILMPVLQPADLWQESGRWFSYGAELMRLHDRNNRDFVLGPTHEEVIVDLFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSF LT E     YNK+  +
Sbjct: 121 IVTSYKDLPLNVYQIQTKFRDERRPRFGLMRGREFIMKDAYSFHLTQECLDREYNKVKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R GL    + A++G IGG  SHEF+VLA +GE  +  S
Sbjct: 181 YCKIFERCGLNFRAVDADTGSIGGSESHEFMVLASSGEDDILYS 224



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 99/168 (58%), Gaps = 2/168 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  G KYS  M+       G    V MG YGIG  RV AA IE + D  GI
Sbjct: 409 ARGIEVGHIFKLGKKYSAAMNTKVLNDKGVAETVIMGCYGIGVSRVAAAAIEQNFDDFGI 468

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+AP+ + LI +   D++ ++  EKIY+ +     DV +DD  E+ G +F  ADL+
Sbjct: 469 IWPKSIAPYLVDLILVNVKDEIAKEVSEKIYSDMLLNNIDVIYDDRDEKAGFKFKDADLI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G PL+VIVG   V +  VEIKHR      ++ +E+VI+Y    F  N+
Sbjct: 529 GIPLKVIVGKGAV-NGMVEIKHRDGSFSGEIKVEDVISYIKE-FEKNK 574


>gi|218768358|ref|YP_002342870.1| prolyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|81857470|sp|Q9JU09|SYP_NEIMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121052366|emb|CAM08698.1| prolyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 570

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 180/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A    VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERTAAQAELVKVHTPNVKTIESLVE 268



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++A F++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMASFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAIAIGEIV 561


>gi|325132465|gb|EGC55158.1| prolyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 599

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 180/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A  + VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERTAAQAELTKVHTPNVKTIESLVE 297



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDAV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 590


>gi|225023763|ref|ZP_03712955.1| hypothetical protein EIKCOROL_00627 [Eikenella corrodens ATCC
           23834]
 gi|224943457|gb|EEG24666.1| hypothetical protein EIKCOROL_00627 [Eikenella corrodens ATCC
           23834]
          Length = 570

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/277 (47%), Positives = 179/277 (64%), Gaps = 15/277 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V A++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVIQPADLWKESGRWDFYGDELLRITDRHDNTFCFSPTCEELITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG-SKHSYNKMFV 179
            I SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF    E   +  Y  M+ 
Sbjct: 121 EITSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADYESLVREGYQPMYN 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y R+F RLGL   P+ A++G IGG  SHEF VLA++GE  +  S +          +DF
Sbjct: 181 AYCRVFDRLGLDYRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSSE----------SDF 230

Query: 240 DDIISLNSIVEQ--WTAP-YAATSDVHNEKLFDSLPE 273
              I L   + Q    AP  AA + VH   +  ++PE
Sbjct: 231 AANIELAPTLRQSGERAPAQAALAKVHTPGV-KTIPE 266



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 15/224 (6%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-------APYAATSDVHNEKLFDSLPEN 274
           F  K + DF +       D +I  N     +T       +P    +D+ N    D  P+ 
Sbjct: 342 FKGKVYADFAVEKLA---DTVIGANEDDHHYTGFNFGRDSPEPEFADIRNVIAGDPSPDG 398

Query: 275 KRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           K     ARGIEVGH+F    KYS  ++A+F   +GK   ++MG YGIG  R+VAA IE +
Sbjct: 399 KGYLKLARGIEVGHVFQLRDKYSAALNASFLDNNGKSQIMEMGCYGIGITRIVAAAIEQN 458

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +D +GIIW +++APF+  ++  N K  + V R+A +KIYA L+  G DV  DD  E+ G 
Sbjct: 459 NDERGIIWTNAMAPFQAVIVPMNYKKSEAV-REAADKIYAELTAAGVDVLLDDRDERAGV 517

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             A ++LLG P ++ +G + + + KVE   R +G  E ++  E+
Sbjct: 518 LLADSELLGIPHRIAIGDRGLKEGKVEYTERRSGETELVAAGEI 561


>gi|313497556|gb|ADR58922.1| ProS [Pseudomonas putida BIRD-1]
          Length = 571

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 24/302 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V          I S+++D+ 
Sbjct: 181 YTNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDV----------IFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATS-----DVHNEKLFDSLPEN---------KRVSARGIEVGH 286
             I     + + T   A T      D  N K    L EN         K +  RG E G 
Sbjct: 231 ANIEKAEAIPRETVRPAPTEELRLVDTPNAKTIAQLVENHGLPIEKTVKTLIVRGAEEGK 290

Query: 287 IF 288
           + 
Sbjct: 291 LI 292



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 112/191 (58%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +     G +GK   +
Sbjct: 378 PVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEALKCQVLGENGKPVVL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++    V R+A +K+YA L
Sbjct: 438 SMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYETDVVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E KHR     + + 
Sbjct: 498 TAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKHRTEQDAQALP 557

Query: 431 LEEVINYASHR 441
           L EV+ +   R
Sbjct: 558 LNEVLTFLQAR 568


>gi|325205891|gb|ADZ01344.1| prolyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 570

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A    VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERTAAQAELVKVHTPNVKTIESLVE 268



 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQVMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 561


>gi|325136158|gb|EGC58766.1| prolyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 599

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 180/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A  + VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERTAAQAELTKVHTPNVKTIESLVE 297



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 590


>gi|187479380|ref|YP_787405.1| prolyl-tRNA synthetase [Bordetella avium 197N]
 gi|114152173|sp|Q2KVA0|SYP_BORA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115423967|emb|CAJ50520.1| prolyl-tRNA synthetase [Bordetella avium 197N]
          Length = 576

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 159/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P DAE+ASH+LM R GMI + + GIYS++PLG K +  V  IIREE
Sbjct: 1   MRASNYHINTLKEAPADAEVASHQLMTRAGMIRKLAGGIYSYMPLGLKVIRKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW ESGR++ YG+E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWQESGRWEQYGQELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  F+ IQ KFRDE RPRFGVMR REF MKDAYSFD    G+  SY+ MF +
Sbjct: 121 EIHSYRQLPVNFFHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAGAGRSYDIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    + A++G IGG  SHEF V+ADTGE  +  + D
Sbjct: 181 YHRIFRRLGLAFRAVAADTGSIGGSRSHEFQVIADTGEDLLVFNPD 226



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 106/185 (57%), Gaps = 7/185 (3%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   A  RGIEVGH+F+ GTKYS  + ATF    GK   +QMG 
Sbjct: 387 VTDLRNVVAGDPSPDGKGTLAIQRGIEVGHVFFLGTKYSEALKATFLDETGKPALMQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE + D +GIIWP ++APF++ +  +     +  R+  E +Y  L + 
Sbjct: 447 YGIGVTRIVGAAIEQNFDNRGIIWPRAIAPFEVVICPVGWGKSETVRNKSEALYQALREQ 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSL 431
           G DV  DD   + G  FA  +L+G PL+V +G + ++D  +E++ R       I  D +L
Sbjct: 507 GIDVILDDRDARPGVMFAEWELIGVPLRVTIGDRGLNDGVIELQGRRDTETVKISVDSAL 566

Query: 432 EEVIN 436
           +E++N
Sbjct: 567 KEILN 571


>gi|304387349|ref|ZP_07369541.1| proline--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304338600|gb|EFM04718.1| proline--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 599

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 180/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A    VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERTAAQAELVKVHTPNVKTIESLVE 297



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 590


>gi|114331243|ref|YP_747465.1| prolyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|123026746|sp|Q0AGN2|SYP_NITEC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114308257|gb|ABI59500.1| prolyl-tRNA synthetase [Nitrosomonas eutropha C91]
          Length = 568

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P +AE+ASH+LMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFLSTLKEAPAEAELASHRLMLRAGLIKRLGSGLYTWMPLGLRILHKIEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +  A+LW ESGR+D +G +ML++ DR+     +GPTHEEV+ DI R 
Sbjct: 61  MNSSGALELLMPAVHPAELWQESGRWDVFGPQMLKIQDRHQHDFCFGPTHEEVIVDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M  +
Sbjct: 121 EIKSYRQLPINFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHADLGSLEQTYQLMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  + FC
Sbjct: 181 YSRIFTRIGLKFRAVAADTGAIGGSGSHEFHVLADSGEDAIAFC 224



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 103/178 (57%), Gaps = 3/178 (1%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K +    RGIEVGHIF   TKYS  M AT+    G+   ++MG YG
Sbjct: 382 DIRNVVTGDPSPDGKGMLEICRGIEVGHIFQLRTKYSEKMKATYLDESGQTQILEMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKVGC 377
           IG  R+VAA IE + D +GII+P ++APF++S+I I  H  +   A  EK+Y      G 
Sbjct: 442 IGVSRIVAAAIEQNCDERGIIFPVAIAPFQLSIIPIGYHKNLQIQAEVEKLYRACRAAGI 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +V  DD  E+ G  FA  +L+G P ++++G + + D  VE + RL      +SL+EVI
Sbjct: 502 EVLLDDREERPGVMFADQELIGIPHRIVIGERNLRDGMVEYQGRLDKTSRLLSLQEVI 559


>gi|301155393|emb|CBW14859.1| prolyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 571

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MDKSGALEIKMPVVQPAELWEESGRWEQYGPELLRFEDRGNRHFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EVSSYRQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHADHASLQQTYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA++GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFSTE 226



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 113/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+AT +G DG+   V MG 
Sbjct: 382 VADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEAMNATVQGEDGRPMVVTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE   D +GI+WP D +APF ++++ +  H  +  ++  E++Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHFDERGIVWPTDEIAPFTVAVVPMNMHKSESVQEYAEELYRTLQA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++ +++
Sbjct: 502 QGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKDQL 561

Query: 435 INY 437
           +++
Sbjct: 562 LDF 564


>gi|325142550|gb|EGC64950.1| prolyl-tRNA synthetase [Neisseria meningitidis 961-5945]
 gi|325198486|gb|ADY93942.1| prolyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 570

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ S
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 268



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 561


>gi|319410604|emb|CBY90973.1| prolyl-tRNA synthetase [Neisseria meningitidis WUE 2594]
          Length = 599

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 180/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A    VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERTAAQAELVKVHTPNVKTIESLVE 297



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++A F++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMASFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAIAIGEIV 590


>gi|325295715|ref|YP_004282229.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066163|gb|ADY74170.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 576

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 163/226 (72%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P ++E+P DAEI SHKL++R G I + + G+Y  LPLG K L  +  +IREE
Sbjct: 1   MRFSRAFIPTMKESPADAEIPSHKLLIRAGFIRKKASGLYDILPLGVKVLLKIEKVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +  A+LW+ESGR+D YGKEM++  DR+D+    GPT EE++TD+ R 
Sbjct: 61  MNKAGAQEVILPIMHPAELWIESGRWDVYGKEMIKFKDRHDRDYALGPTAEEMITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQI  KFRDE+RPRFG+MR+REF+MKDAYSF  + E ++  Y  M+ +
Sbjct: 121 EVKSYKDLPLNLYQIGRKFRDEIRPRFGLMRAREFIMKDAYSFHASNEDAEREYWNMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF ++GL    + A++G IGG  SHEF+V+ADTGE + V+C K
Sbjct: 181 YSRIFRKMGLVFKAVEADTGEIGGKFSHEFMVIADTGEGKLVYCEK 226



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +  RGIEVGHIF  GTKYS  M+ATF   DGK+  + MG YGIG  RV+AA +E ++D  
Sbjct: 401 IEKRGIEVGHIFKLGTKYSQAMNATFVDEDGKEKPMVMGCYGIGVTRVMAAAVEQNYDEN 460

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP  +APF++ +I +    +   +  E IY  L K G DV  DD   + G +F  AD
Sbjct: 461 GIIWPVEIAPFEVIVIPVNVKKEEIIETAENIYDELQKNGFDVAIDDRNARPGFKFKDAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P Q+IVG K   +  VEIK R TG R ++++ +V+
Sbjct: 521 LIGIPYQIIVGKK-AGEGVVEIKVRKTGERFEIAVNKVV 558


>gi|88705599|ref|ZP_01103309.1| prolyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88700112|gb|EAQ97221.1| prolyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 571

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/221 (52%), Positives = 158/221 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +   +E P DAEI SH+LMLR G+I + S G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MRSSEFLITTHKETPADAEIISHRLMLRAGLIRKLSSGLYTWMPMGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+++P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDASGALELAMPMVQPAELWEESGRWEQYGPELLRIQDRHQRDFCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K RDE+RPRFGVMR+REFLMKDAYSF       + +Y  M  +
Sbjct: 121 EISSYKQLPLNLYQIQNKVRDEIRPRFGVMRAREFLMKDAYSFHADATSLEATYGVMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF RLGL   P+ A+SG IGG+ SHEF VLAD+GE  +
Sbjct: 181 YTRIFERLGLDFRPVMADSGSIGGNTSHEFHVLADSGEDAI 221



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           ++D+ N    D  P+ K      RGIEVGHIF  GTKYS  M+A      G++  + MG 
Sbjct: 381 SADLRNVVAGDPSPDGKGQLQIRRGIEVGHIFQLGTKYSEAMNARVLDETGRNVTLSMGC 440

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC-RDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD +GIIWP ++APF+++++ +  H      +A E ++     +
Sbjct: 441 YGIGVSRIVAAAIEQNHDDRGIIWPSAMAPFQLAIVPLNMHKSAAVAEAAETLHQECLAL 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA  +LLG P ++++G + +++ ++E + R     + ++L E +
Sbjct: 501 GIEVLMDDRNERPGVKFADMELLGIPHRIVIGDRSLAEGEIEYQGRRDADSQRVALTEAM 560

Query: 436 NYASHRFSNN 445
           ++ + + ++ 
Sbjct: 561 SFITAQLTSG 570


>gi|325274563|ref|ZP_08140621.1| prolyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324100290|gb|EGB98078.1| prolyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 571

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 133/301 (44%), Positives = 184/301 (61%), Gaps = 24/301 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  V          I S+++D+ 
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDV----------IFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATS-----DVHNEKLFDSLPEN---------KRVSARGIEVGH 286
             I     + + T   A T      D  N K    L EN         K +  RG E G 
Sbjct: 231 ANIEKAEAIPRETVRPAPTEELRLVDTPNAKTIAQLVENFGLPIEKTVKTLIVRGAEEGK 290

Query: 287 I 287
           +
Sbjct: 291 L 291



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 112/191 (58%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  +     G +GK   +
Sbjct: 378 PVPQVADLRNVVEGDPSPDGQGTLIIKRGIEVGHIFQLGTKYSEALKCQVLGENGKPVVL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   +  R+A +K+YA L
Sbjct: 438 SMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYETEAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E KHR     + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKHRTEQDAQPLP 557

Query: 431 LEEVINYASHR 441
           L EV+ +   R
Sbjct: 558 LNEVLTFLQAR 568


>gi|295106076|emb|CBL03619.1| prolyl-tRNA synthetase, family II [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 585

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 124/283 (43%), Positives = 185/283 (65%), Gaps = 10/283 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E+P DAEIASHKL+LR GMI + + G+Y++LPLG++ L  V  I+REE
Sbjct: 7   MRMSELCVPTLKEDPTDAEIASHKLLLRAGMIRKTASGVYTFLPLGKRVLAKVERIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 67  MDAIGSQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITALVRN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF  + E  + +Y+ M  +
Sbjct: 127 ELRSYKELPLTLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHASQESLQKTYDDMSAA 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y RI  R+ +   P+ A+SG IGG ++ EF+ LA+ GE + V C+  +      + N + 
Sbjct: 187 YGRICERMDMDYRPVEADSGQIGGSVTCEFMALAEAGEAELVHCACGW------AANAEA 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHN---EKLFDSLPENKRVSA 279
            D ++  ++ +       AT  VH       F  +PE+  V A
Sbjct: 241 GDCLARPTVYDVPAMEKVATPGVHTIAELAAFLDIPESSTVKA 283



 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 103/169 (60%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIEV  +F  G KYS  M ATF   DG +    MG YG+G  R +AA++E  +D  G
Sbjct: 403 GARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMGCYGVGVSRTMAAIVEQHNDENG 462

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I WP SVAP  + ++ +   D   + A EK+   L+K+G +V  DD  E+ G +FA ADL
Sbjct: 463 IAWPFSVAPAHVCVLPLTVGDDEVQPAAEKLAGDLAKLGLEVVIDDRKERAGVKFADADL 522

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G+PLQV+VG + +++ KVEIKHR TG R D+SL  + +  +    N +
Sbjct: 523 VGWPLQVVVGKRGLAEGKVEIKHRKTGARRDISLMALTDAVAFAQRNTK 571


>gi|148546477|ref|YP_001266579.1| prolyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166980143|sp|A5VZT5|SYP_PSEP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148510535|gb|ABQ77395.1| prolyl-tRNA synthetase [Pseudomonas putida F1]
          Length = 571

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 24/302 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V          I S+++D+ 
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDV----------IFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATS-----DVHNEKLFDSLPEN---------KRVSARGIEVGH 286
             I     + + T   A T      D  N K    L EN         K +  RG E G 
Sbjct: 231 ANIEKAEAIPRETVRPAPTEELRLVDTPNAKTIAQLVENHGLPIEKTVKTLIVRGAEEGK 290

Query: 287 IF 288
           + 
Sbjct: 291 LI 292



 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +     G +GK   +
Sbjct: 378 PVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEALKCQVLGENGKPVVL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   +V R+A +K+YA L
Sbjct: 438 SMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYETEVVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E KHR     + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKHRTEQDAQALP 557

Query: 431 LEEVINYASHR 441
           L EV+ +   R
Sbjct: 558 LNEVLTFLQAR 568


>gi|288553027|ref|YP_003424962.1| prolyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288544187|gb|ADC48070.1| prolyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 572

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+    LP L++ P DA+I SH+LMLR GMI Q + G+YS+LPL ++ L  V +I+REE
Sbjct: 1   MRQRSLLLPTLRDVPADADIISHQLMLRAGMIRQIAAGVYSYLPLAKRVLHKVESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++PT+  A+LW E+GR+D  G E++RL DR+D+    GPTHEEV+T I R 
Sbjct: 61  MDAAGAQELTMPTMHPAELWQETGRWDKMGGELMRLKDRHDRDFALGPTHEEVITSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  TPE    +Y +M+ +
Sbjct: 121 SISSYKKLPVNLYQIQTKFRDERRPRFGLLRGREFMMKDAYSFHATPESLDEAYKEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL   P+ A+SG IGG  +HEF+ LAD GE  +  S +
Sbjct: 181 YSRIFSRAGLTFRPVIADSGAIGGKDTHEFMALADVGEDTIAYSDE 226



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 91/146 (62%), Gaps = 1/146 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  GT YS  M+AT    +GK   + MG YG+G  R VAA+IE  HD  GI
Sbjct: 402 AQGIEVGQVFKLGTVYSEAMNATILDENGKTQPMIMGCYGVGVSRTVAAIIEQHHDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAP+ + L+ + + +    +  E++Y  L K G DV +DD  E+ G +F  +DL+
Sbjct: 462 VWPPSVAPYDVHLLTLNSKNAEQSELSEELYQSLKKTGFDVLYDDRPERAGVKFKDSDLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G PL+V VG K  ++  VE+K R +G
Sbjct: 522 GIPLRVSVG-KRAAEGIVEVKIRKSG 546


>gi|261392382|emb|CAX49924.1| prolyl-tRNA synthetase (proline--tRNA ligase; ProRS; global RNA
           synthesis factor) [Neisseria meningitidis 8013]
          Length = 570

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A    VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERTAAQAELVKVHTPNVKTIESLVE 268



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +S VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKESNVEYAERRNNEAQAVAIGEIV 561


>gi|161870212|ref|YP_001599382.1| prolyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|161595765|gb|ABX73425.1| prolyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 599

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ S
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDS 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 297



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 590


>gi|126306083|ref|XP_001381501.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Monodelphis domestica]
          Length = 475

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 148/408 (36%), Positives = 220/408 (53%), Gaps = 36/408 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    +    S +LML+TG+IH    G Y +LP   +A++ +  +I +E    G  ++ 
Sbjct: 59  LESKSAEVTCKSQRLMLQTGLIHPAGPGCYHYLPYTVRAMEKLVKVIDQEMQAIGGQKLD 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLP 129
           +PTL SA+LW  + R++  GKE+ RL DR++K    GPTHEEV+T +  S    SY+ LP
Sbjct: 119 MPTLSSAELWRVTDRWNLMGKELFRLQDRHNKDYCLGPTHEEVITSLMASQKTLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           +  YQI  KFRDE RPRFG++R REF MKD Y+FD + E +  +Y+ +  +Y R+F+RLG
Sbjct: 179 YLLYQITRKFRDEPRPRFGLLRGREFYMKDMYTFDCSSEAAHQTYDLVCEAYGRVFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ + ++A  G IGG +SHEF +  + GE     CS    +F    E  D          
Sbjct: 239 LQFVRVQAAVGSIGGTMSHEFQLPLNIGEDVLAVCSN--CNFAANVETLD---------- 286

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                 P   T  V   KL ++         +G+EVGH FY GTKYS   +A F  A GK
Sbjct: 287 ------PRDPTCPVCQGKLTET---------KGVEVGHTFYLGTKYSSVFNAEFINAQGK 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD------QVCR 362
              ++MG YG+G  R++AA IE     + I WP  +AP+++ LI  K         ++  
Sbjct: 332 PSLLEMGCYGLGVTRILAAAIEMLSMEECIRWPSLLAPYQVCLIPPKKGSKEEMGIELMG 391

Query: 363 DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSK 409
              + I   L ++  +V  DD +   IG++   A+ LG+P  VI G +
Sbjct: 392 TLYDDITEALPQLKGEVLLDDRIHLTIGNRLKDANKLGYPFVVIAGKR 439


>gi|26987940|ref|NP_743365.1| prolyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|81840777|sp|Q88NK2|SYP_PSEPK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24982651|gb|AAN66829.1|AE016311_9 prolyl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 571

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 24/302 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V          I S+++D+ 
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDV----------IFSDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATS-----DVHNEKLFDSLPEN---------KRVSARGIEVGH 286
             I     + + T   A T      D  N K    L EN         K +  RG E G 
Sbjct: 231 ANIEKAEAIPRETVRPAPTEELRLVDTPNAKTIAQLVENHGLPIEKTVKTLIVRGAEEGK 290

Query: 287 IF 288
           + 
Sbjct: 291 LI 292



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 112/191 (58%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +     G +GK   +
Sbjct: 378 PVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEALKCQVLGENGKPVVL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++    V R+A +K+YA L
Sbjct: 438 SMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYETDVVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E KHR     + + 
Sbjct: 498 TAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKHRTEQDAQALP 557

Query: 431 LEEVINYASHR 441
           L EV+ +   R
Sbjct: 558 LNEVLTFLQAR 568


>gi|325577191|ref|ZP_08147675.1| proline--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160773|gb|EGC72894.1| proline--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 571

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MDKSGALEIKMPVVQPAELWEESGRWEQYGPELLRFEDRGNRHFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVSSYRQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHADHSSLQQTYEVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGL    ++A++G IGG  SHEF VLA++GE  V  S +
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFSTE 226



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 113/183 (61%), Gaps = 4/183 (2%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+AT +G DG+   V MG 
Sbjct: 382 VADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEAMNATVQGEDGRPMVVTMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE   D +GI+WP D +APF ++++ +  H  +  ++  E++Y  L  
Sbjct: 442 YGIGVTRVVAAAIEQHFDERGIVWPTDEIAPFTVAVLPMNMHKSESVQEYAEELYCTLQA 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG ++ ++ E++
Sbjct: 502 QGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEKQMIAKEQL 561

Query: 435 INY 437
           +++
Sbjct: 562 LDF 564


>gi|311694949|gb|ADP97822.1| prolyl-tRNA synthetase [marine bacterium HP15]
          Length = 577

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQLMLRAGMIRKLAAGLYTWLPMGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWEESGRWTQYGGELLRMKDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQ+Q KFRDE RPRFGVMR+REFLMKDAYSF L  E    +Y  M  +
Sbjct: 121 EISSYKELPANFYQVQTKFRDERRPRFGVMRAREFLMKDAYSFHLNAESLNETYELMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    ++A+SG IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCAIFDRFGLDYRAVQADSGAIGGSASHEFHVLASSGEDDIVFS 224



 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M+AT    +GK   + MG YG+G  RVVAA IE +HD  GII
Sbjct: 409 RGIEVGHIFKLGNKYSTAMNATVLDENGKTVIMDMGCYGLGVSRVVAAAIEQNHDENGII 468

Query: 340 WPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ + AH      +A EK+Y +L + G DV  DD  E+ G +FA  +L+
Sbjct: 469 WPDAIAPFQVAIVTLNAHKSPTVAEAGEKLYEQLRQAGYDVLLDDRKERPGVKFADMELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P + +V  + ++   +E K R    ++D+ + E + +
Sbjct: 529 GIPHRFVVSERGLAAGTLEYKGRKDAEKQDVPVAEALPF 567


>gi|319795456|ref|YP_004157096.1| prolyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315597919|gb|ADU38985.1| prolyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 581

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ASH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASRFFVSTLKEAPADAEVASHRLMMRAGMIKKLGTGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+++P +Q A+ W E+GR++  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIELTMPVVQPAEFWQETGRFEKMGPELLRIKDRHDRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDLDAAKASYQIMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y  IF R GL+   + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRNIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V A  RGIEVGH+F  GTKYS  M+AT+    GK  +++MG 
Sbjct: 393 VADLRNVVAGDASPDGKGVLAIERGIEVGHVFVLGTKYSKDMNATYLDEGGKPQFLEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I        + + E +Y  L   
Sbjct: 453 YGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVVCPIGMDRSPEVKVSAEALYEELLAK 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + ++E +HR
Sbjct: 513 GVDVLLDDRGERPGAMFADWELIGVPHRVVISDRGLKEGQLEYQHR 558


>gi|298368808|ref|ZP_06980126.1| proline--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282811|gb|EFI24298.1| proline--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 569

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 179/273 (65%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTDSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A  A  + VH  N K  DSL
Sbjct: 237 PTLPLKG---ERAAAQAELTKVHTPNVKTIDSL 266



 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 89/145 (61%), Gaps = 3/145 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIY  L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDAV-REAADKIYTELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           LLG P ++++G + + +  VE   R
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAER 547


>gi|241664234|ref|YP_002982594.1| prolyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240866261|gb|ACS63922.1| prolyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 574

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKLSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +    D
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYCPD 226



 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 382 PEPEVYDLRNVVAGDPSPDGKGTLAVCRGIEVGHVFMLGTRYSEAMNATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +        R+  ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPASIAPFQVVICPVGYDRSNAVREEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E + R
Sbjct: 502 LVAAGIDVMLDDRGERPGAMFADWELIGVPFRVVVGDRGLKEGKLEFQGR 551


>gi|329893675|ref|ZP_08269809.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328923602|gb|EGG30914.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 571

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 127/264 (48%), Positives = 175/264 (66%), Gaps = 7/264 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DAE+ SH+LMLR GMI + + G+Y+W+PLG K L  V  I+REE
Sbjct: 1   MRTSQTLISTLKETPADAEVISHRLMLRAGMIKKLASGLYTWMPLGLKVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDAAGAIELLMPVVQPAELWQESGRWAQYGPELLRMHDRHTREFCLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +     + +Y  M  +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDQASLEETYWVMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S +  DF   + N +  
Sbjct: 181 YSNVFDRLGLMYRPVEADTGSIGGSHSHEFHVLADSGEDDIAFSNE-SDF---AANVELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHN 264
           + ++ N  +E+  AP    +++H 
Sbjct: 237 EAVAPN--IER-PAPSQPMTELHT 257



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M+A    A+GK   + MG YGIG  R+VAA IE +HD KGII
Sbjct: 405 RGIEVGHIFQLGQKYSEAMNAQVLDANGKAQTLSMGCYGIGISRIVAAAIEQNHDDKGII 464

Query: 340 WPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WPD++AP++++++  N++  + V + A E +YA+L+  G +V  DD  E+ G +FA  +L
Sbjct: 465 WPDAMAPYQVAIVPLNMQKSEAVAQ-AAETLYAQLTDAGIEVLLDDRNERPGIKFADMEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G P ++++G + +++ ++E KHR     E++++ + + 
Sbjct: 524 IGIPHRIVIGDRSLAEGQLEYKHRAAPDSENIAVTDTLT 562


>gi|288575624|ref|ZP_05977335.2| proline--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288567367|gb|EFC88927.1| proline--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 581

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 179/273 (65%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 12  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 72  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 132 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 192 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 247

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A  A  + VH  N K  DSL
Sbjct: 248 PTLPLKG---ERAAAQAELTKVHTPNVKTIDSL 277



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 415 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 474

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 475 IWTKAMAPFEVVIVPMNYKKSDAV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 533

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           LLG P ++++G + + +  VE   R     + + L E+
Sbjct: 534 LLGIPHRIVIGDRALKEGNVEYAERRDNQAQTVGLNEI 571


>gi|71279026|ref|YP_269920.1| prolyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|114152184|sp|Q47Z50|SYP_COLP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71144766|gb|AAZ25239.1| prolyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 569

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/230 (52%), Positives = 157/230 (68%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P +AE+ SH+LMLR G++   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPANAEVISHQLMLRAGLVRNLASGLYTWLPTGLRVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ +P +Q ADLW ESGR D YG E+LR+ DR+ +  + GPTHEEV+T +  +
Sbjct: 61  MQRAGGNEILMPMVQPADLWQESGRLDDYGPELLRINDRHKRPFVLGPTHEEVVTKLVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMR REFLMKDAYSF L  E  + +Y  MF +
Sbjct: 121 ELSSYKQLPLNVFQIQSKFRDEIRPRFGVMRGREFLMKDAYSFHLEDECLEKTYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y RIF RL L   P+ A++G IGG+ SHEF VLAD+GE  +  S D  DF
Sbjct: 181 YCRIFERLELNFRPVLADTGSIGGEKSHEFHVLADSGEDDIAFS-DASDF 229



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KY+  M+       GK+  + MG YGIG  R+VAA IE +HD  GI 
Sbjct: 409 RGIEVGHIFQLGRKYAEAMNCAVLNEGGKNQTLTMGCYGIGVSRIVAAAIEQNHDKYGIK 468

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+++++ +  A     ++  E +Y  L++ G +V +DD  E+ G  FA  +L+
Sbjct: 469 WPKAIAPFQVAIVPMNMAKSARVKETAEALYESLNQAGIEVLFDDRKERPGVMFADHELM 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL +I+G + +   ++E+K+R+TG +  ++++EV++
Sbjct: 529 GTPLLLIIGERNLDAQQIELKNRITGEKSLIAIDEVMS 566


>gi|325144523|gb|EGC66822.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325208298|gb|ADZ03750.1| prolyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 599

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     + TA  A    VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERTAAQAELVKVHTPNVKTIESLVE 297



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQVMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 590


>gi|187930129|ref|YP_001900616.1| prolyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|226701322|sp|B2UCU9|SYP_RALPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187727019|gb|ACD28184.1| prolyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 574

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +    D
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYCPD 226



 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D+ P+ K   A  RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 382 PEPEVYDLRNVVAGDASPDGKGTLAICRGIEVGHVFMLGTRYSEAMNATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +  +D+    R+  ++++A
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPASIAPFQVVICPV-GYDRSDAVREEADRLHA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E + R
Sbjct: 501 ELVAAGIDVMLDDRGERPGAMFADWELIGVPFRVVVGDRGLKEGKLEFQGR 551


>gi|320352952|ref|YP_004194291.1| prolyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320121454|gb|ADW17000.1| prolyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 570

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP  +E P +AE+ SH+L++R G I + + G+Y++LP+G  AL  V  I+R+E
Sbjct: 1   MRYSQMLLPTTKETPSEAEVVSHQLLVRGGFIRKLTSGMYTYLPMGFLALQKVTEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q  DLW ESGR+  YG E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEILMPMVQPGDLWEESGRWKKYGPELLRFRDRHDRDYCLGPTHEEVVTDVARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY  M  +
Sbjct: 121 ELQSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDVDDAGASRSYEIMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RIF R GL+   + A+SG IGG  SHEF+VLA+TGE T V C
Sbjct: 181 YHRIFERCGLEFRAVEADSGAIGGSFSHEFMVLAETGEDTLVIC 224



 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 103/161 (63%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M A F+ +DG++    MG YGIG  RVVAA IE +HD KGII+
Sbjct: 404 GIEVGHIFKLGTKYSEAMKANFQDSDGQEKPFVMGCYGIGVSRVVAAAIEQNHDAKGIIF 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +APF++ ++N+   D+    A E +Y +L   G DV  DD  E+ GS+FA ADLLG 
Sbjct: 464 PVPLAPFQVIVLNLGPKDEGYCTAAEDLYTQLRAQGLDVLLDDRDERPGSKFADADLLGI 523

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P ++ VG  F  + KVEI+ R TG  + +SLEE   Y + R
Sbjct: 524 PYRLTVGKTFEKEGKVEIRSRKTGETQVLSLEEATAYLAER 564


>gi|114319700|ref|YP_741383.1| prolyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312397|sp|Q0AB94|SYP_ALHEH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114226094|gb|ABI55893.1| prolyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 568

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S + L   +E P DAEI SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRASLFPLSTSKETPADAEIVSHQLMLRAGMIRKLAAGLYTWTPLGLRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW ES R+D YG E+LRL DR+++   +GPTHEEV+TD  R 
Sbjct: 61  MDRAGAHELLMPAVQPAELWQESTRWDKYGPELLRLKDRHERDFCFGPTHEEVITDYVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVKSYRQLPLNLYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDDCLARTYQVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL    + A+SG IGG +SHEF VLA++GE  V  S +
Sbjct: 181 YTRIFERTGLVFRAVAADSGNIGGSVSHEFHVLAESGEDAVAFSDE 226



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 95/166 (57%), Gaps = 1/166 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  G +YS  M AT     G    V MG YGIG  RVVAA IE +HD  GI
Sbjct: 403 ARGIEVGHIFQLGREYSEKMKATVLNEAGDAQTVTMGCYGIGVSRVVAAAIEQNHDDNGI 462

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP  +APF+++L+ I  +  +   +  EK+YA L   G +VF+DD   + G +FA  +L
Sbjct: 463 IWPAPIAPFQLALVPIGMNRSEAVTEQAEKLYAELQAEGVEVFFDDRDARPGVKFADMEL 522

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P ++++G + + +  VE + R      D+ L E+  +   R  
Sbjct: 523 IGIPHRLVIGDRGLKNGVVEYRGRRDSESTDVPLAELSAFLRERLG 568


>gi|198283898|ref|YP_002220219.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666412|ref|YP_002426532.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226731419|sp|B7J4Y9|SYP_ACIF2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731420|sp|B5EKH7|SYP_ACIF5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|198248419|gb|ACH84012.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518625|gb|ACK79211.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 570

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 159/221 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P L+E P +AE+ SH+L+LR G I + + G+Y+W+PLG + L  V  ++REE
Sbjct: 1   MRASQIFIPTLKETPAEAELVSHQLLLRGGFIRRLASGLYTWMPLGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV++D+ R 
Sbjct: 61  MDRSGAQELLMPVVQPAELWQESGRWEQYGPELLRLRDRHDREFCLGPTHEEVISDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF +     + +Y  M+ +
Sbjct: 121 EIHSYRQLPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHMDHSSLEITYQAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y R+F RLGL    + A++G IGG  SHEF VLAD+GE  +
Sbjct: 181 YQRVFTRLGLSFRAVEADNGAIGGKRSHEFHVLADSGEDAI 221



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 98/184 (53%), Gaps = 6/184 (3%)

Query: 255 PYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A +D+ N +  D+ P   E      RGIEVGH+F  G +YS  M  T     G+D  
Sbjct: 376 PRPAAADLRNVRAGDACPHCAEGTLSIRRGIEVGHVFQLGERYSESMGITVLDETGRDAT 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           V MG YGIG  RVVAA +E   D +GIIWP ++APF++ ++ I A        A + ++ 
Sbjct: 436 VTMGCYGIGVSRVVAAAVEQHFDDRGIIWPVALAPFEVGIVAINARKSPDVAAAAQALHD 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL   G  V  DD  E+ G QFA  DL+G P +++V    ++    E + R T   E++ 
Sbjct: 496 RLEAEGYSVLLDDRDERPGVQFATMDLVGLPHRIVVSDTVLAQGVWEYRARRT--TENVL 553

Query: 431 LEEV 434
           L+E 
Sbjct: 554 LDET 557


>gi|297584075|ref|YP_003699855.1| prolyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297142532|gb|ADH99289.1| prolyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 567

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 159/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+  Y  P L++ P DA++ SH+LMLR G+I Q + G+YS+LPLG K L  V AI+REE
Sbjct: 1   MRQRTYLSPTLRDIPSDADVVSHQLMLRAGLIRQSTSGVYSFLPLGYKVLQKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA EM +P++Q A+LW ESGR+D YG E++R  DR+ +    GPTHEEV+T I R 
Sbjct: 61  MDRAGAQEMFMPSIQPAELWQESGRWDDYGAELMRFKDRHQREFALGPTHEEVITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP T YQIQ KFRDE RPRFGV+R REFLMKDAYSFD+  EG   SY++M+ +
Sbjct: 121 DIRSYKELPMTLYQIQTKFRDERRPRFGVLRGREFLMKDAYSFDVDFEGLDQSYDQMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y ++F R  L    + A+SG +GG  +HEF+VL+  GE  +  S +
Sbjct: 181 YKKVFTRCDLNFRAVVADSGAMGGKDTHEFMVLSSIGEDTIAYSDE 226



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 91/146 (62%), Gaps = 5/146 (3%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGH+F  GTKYS  + AT     GK   + MGSYGIG  R VAA+IE  HD  GIIW
Sbjct: 405 GIEVGHVFKLGTKYSEALGATVLDDQGKARPIVMGSYGIGVSRTVAAIIEEHHDEDGIIW 464

Query: 341 PDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           P SVAPF+  LI  NIK  +Q  +   E +Y  L + G D+ +DD  E+ G +F  +DLL
Sbjct: 465 PLSVAPFQAHLIPVNIKQDEQ--KALAESLYTELQESGLDILFDDRQERPGVKFKDSDLL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P++V +G K   +  VE+K+R +G
Sbjct: 523 GLPIRVTIGKK-AGEGIVEVKYRKSG 547


>gi|229006095|ref|ZP_04163783.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228755171|gb|EEM04528.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock1-4]
          Length = 566

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/221 (53%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMALSDVGEDTI 221



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAAV E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAVAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREVGETIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R T    ++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEELHAYIAN 563


>gi|228992547|ref|ZP_04152474.1| Prolyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228998595|ref|ZP_04158182.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228761063|gb|EEM10022.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228767181|gb|EEM15817.1| Prolyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 566

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/221 (53%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMALSDVGEDTI 221



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAAV E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAVAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREVGETIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R T    ++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEELHAYIAN 563


>gi|261855252|ref|YP_003262535.1| prolyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261835721|gb|ACX95488.1| prolyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 568

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/221 (53%), Positives = 158/221 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P +AEI SH+LMLR GMI + + G+Y+W PLG + L  V A++REE
Sbjct: 1   MRSSQFPLNTLKETPTEAEIISHQLMLRAGMIRRLASGLYTWSPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV++D  R 
Sbjct: 61  MEGIGALELLMPAIQPAELWQESGRWQKYGPELLRVKDRHDREFCVGPTHEEVISDYARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  +YQ+Q KFRDE+RPRFGVMR+REF+MKDAYSF    E  + +Y  M+ +
Sbjct: 121 ELKSYRQLPICYYQVQTKFRDEIRPRFGVMRAREFIMKDAYSFHADVESLRVTYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +
Sbjct: 181 YTRIFTRLGLKFRAVEADTGSIGGKGSHEFHVLADSGEDAI 221



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T+D+ N    D  P  ++K   ARGIEVGH+F  GT YS  M   F    GK    
Sbjct: 377 PEPETADLRNAVEGDPAPDGQDKLAIARGIEVGHVFQLGTTYSEKMHCEFLDEHGKPATA 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYAR 371
            MG YGIG  R+VAA IE +HD  GI+WP  +APF+++++ I  H      A  E++ A 
Sbjct: 437 IMGCYGIGVSRIVAAAIEQNHDDNGIVWPVPLAPFEVAIVPINGHRAPAVQAEAERLEAE 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+  G +V  DD G + G  FA  +L+G PL+++V  + ++  + E + R
Sbjct: 497 LTAQGFNVLLDDRGLRPGVAFADMELIGIPLRIVVSERGLAAGEYETRLR 546


>gi|255065704|ref|ZP_05317559.1| proline--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255050022|gb|EET45486.1| proline--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 570

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 179/273 (65%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A  A  + VH  N K  DSL
Sbjct: 237 PTLPLKG---ERAAAQAELAKVHTPNVKTIDSL 266



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 96/158 (60%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V RDA +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDAV-RDAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           LLG P ++++G + + +  VE   R     + +SL E+
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRDNQAQTVSLNEI 560


>gi|223939080|ref|ZP_03630964.1| prolyl-tRNA synthetase [bacterium Ellin514]
 gi|223892240|gb|EEF58717.1| prolyl-tRNA synthetase [bacterium Ellin514]
          Length = 576

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+E P +AEI SHKL+LR G++ + S G+Y+++PLG +AL  V  I+REE
Sbjct: 1   MRWTQTLIPTLKETPAEAEITSHKLLLRAGLVRKLSGGLYTFMPLGLRALRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  ++W +SGRY +  +   ++ DR  K  I GPTHEEV+T +   
Sbjct: 61  MNRAGALELLMPAMQPPEIWEKSGRYVTASEVFFKVRDRAKKEWILGPTHEEVITTLVAG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FYQIQ KFRDE+RPRFG+MR++EF+MKDAYSFD+T E ++ SY KM+ +
Sbjct: 121 EISSYRQLPKNFYQIQTKFRDEIRPRFGLMRAKEFIMKDAYSFDVTDELAQISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GLK++ + A++G +GG  SHEF+V A+TGE + V+C
Sbjct: 181 YTRIFQRCGLKAVAVEADTGVMGGKFSHEFMVPAETGENEVVYC 224



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 4/161 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IEVGH+F  GTKYS  + A F   DGK     MG YGIG  R + A+IE S+D  GII
Sbjct: 412 RAIEVGHVFKLGTKYSEKLGALFLDEDGKQKPAVMGCYGIGVTRTLQAIIEQSNDKDGII 471

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP SVAP+ + +  +  A         EKIY+ L   G DV  DD  E+ G +F  ++L+
Sbjct: 472 WPVSVAPYTVCITPLGVAAGSATMVLAEKIYSELVAQGIDVILDDRDERPGVKFKDSELV 531

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR---LTGIREDMSLEEVIN 436
           GFP+++ +G K ++  +VE+K R   LT ++ + ++ +++ 
Sbjct: 532 GFPIRLGIGEKSLAKGEVELKLRGGVLTPVKTEEAVAKILE 572


>gi|309783049|ref|ZP_07677768.1| proline--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918157|gb|EFP63835.1| proline--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 574

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +    D
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYCPD 226



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 382 PEPEVYDLRNVVAGDPSPDGKGTLAVCRGIEVGHVFMLGTRYSEAMNATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +  +D+    R+  ++++A
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPASIAPFQVVICPV-GYDRSDAVREEADRLHA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E + R
Sbjct: 501 ELVAAGIDVMLDDRGERPGAMFADWELIGVPFRVVVGDRGLKEGKLEFQGR 551


>gi|229592381|ref|YP_002874500.1| prolyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229364247|emb|CAY51951.1| proline tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 596

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 186/303 (61%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G K +  V AI+REE
Sbjct: 26  MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLKVMRKVEAIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 86  MNAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLMRN 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 146 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 206 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 255

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V + T+  A   ++   +L D+ PE K ++A             K++LP+  
Sbjct: 256 ANIEKAEAVPRETSRPAPAEEL---RLVDT-PETKTIAA----------LVEKFNLPIEK 301

Query: 301 TFK 303
           T K
Sbjct: 302 TIK 304



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 111/192 (57%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M     G +GK   +
Sbjct: 403 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAMKCEVLGENGKPITL 462

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +MG YGIG  RVVAA IE ++D KGIIW D++APF+++L+ ++   +  R+A +K+YA L
Sbjct: 463 EMGCYGIGVSRVVAAAIEQNNDEKGIIWSDALAPFQVALVPLRYETEQVREATDKLYAEL 522

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +E K R     + + 
Sbjct: 523 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNLEYKSRTEAEAQPLP 582

Query: 431 LEEVINYASHRF 442
           + +V+++   R 
Sbjct: 583 VADVLSFLQARI 594


>gi|332809089|ref|XP_513427.3| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial [Pan
           troglodytes]
          Length = 475

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/412 (35%), Positives = 222/412 (53%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSI 248
           L  + ++A+ G IGG +SHEF +  D GE ++  C +        S N +  D+  +N  
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEDRLAICPRCSF-----SANMETLDLSQMNCP 293

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             Q   P   T                    +GIEVGH FY GTKYS   +A F    GK
Sbjct: 294 ACQ--GPLTKT--------------------KGIEVGHTFYLGTKYSSIFNAQFTNVCGK 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       + WP  +AP++  LI  K  + +Q   +   
Sbjct: 332 PTLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIG 391

Query: 367 KIYARLS----KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           ++Y  ++    ++  +V  DD     IG++   A+  G+P  +I G + + D
Sbjct: 392 QLYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALED 443


>gi|121533721|ref|ZP_01665548.1| prolyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121307712|gb|EAX48627.1| prolyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 567

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 157/225 (69%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L+E P +AE+ SH+LMLR GMI + + GIY++LPL  + L  +  IIREE
Sbjct: 1   MRASNLYAPTLRETPAEAEVISHQLMLRAGMIRKAAGGIYTYLPLAWRVLKKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ++GR+D YG EM RL DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAKGGQELLMPIVQPAEIWKKTGRWDVYGDEMFRLKDRHQRDFCLGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ K+RDE+RPRFG+MR REF+MKD YSFD   EG   SYNKM+ +
Sbjct: 121 EVRSYRQLPLLLYQIQNKYRDEIRPRFGLMRGREFIMKDLYSFDRDEEGLNESYNKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y R+F R GL   P+ A+SG IGG  SHEF+VLA++GE   V+C+
Sbjct: 181 YTRVFTRCGLTFRPVEADSGAIGGSGSHEFMVLAESGEAAIVYCT 225



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 94/147 (63%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEVG +F   TKYS  + AT+   +G++  + MG YGIG  R +AA IE +HD  G
Sbjct: 400 TARGIEVGQVFKLYTKYSNALGATYLDENGQERPIVMGCYGIGVTRTMAAAIEQNHDENG 459

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP  +APF + +I + A ++      E++Y  L+K G +   DD  E+ G +F  ADL
Sbjct: 460 IIWPVPIAPFHVVVIPVNAKEEAQMSLAEEVYTELNKAGVEAILDDRNERPGVKFKDADL 519

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G+PL+V +G K +S+ +VE+K R TG
Sbjct: 520 IGYPLRVTIGPKALSEGRVEVKVRRTG 546


>gi|34303926|ref|NP_689481.2| probable prolyl-tRNA synthetase, mitochondrial precursor [Homo
           sapiens]
 gi|73919761|sp|Q7L3T8|SYPM_HUMAN RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|33873290|gb|AAH11758.2| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|39644604|gb|AAH07956.2| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|56204888|emb|CAI18996.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119627074|gb|EAX06669.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Homo sapiens]
 gi|158260381|dbj|BAF82368.1| unnamed protein product [Homo sapiens]
 gi|312152388|gb|ADQ32706.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [synthetic
           construct]
          Length = 475

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/412 (35%), Positives = 222/412 (53%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSI 248
           L  + ++A+ G IGG +SHEF +  D GE ++  C +        S N +  D+  +N  
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEDRLAICPRCSF-----SANMETLDLSQMNCP 293

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             Q   P   T                    +GIEVGH FY GTKYS   +A F    GK
Sbjct: 294 ACQ--GPLTKT--------------------KGIEVGHTFYLGTKYSSIFNAQFTNVCGK 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       + WP  +AP++  LI  K  + +Q   +   
Sbjct: 332 PTLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIG 391

Query: 367 KIYARLS----KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           ++Y  ++    ++  +V  DD     IG++   A+  G+P  +I G + + D
Sbjct: 392 QLYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALED 443


>gi|167035206|ref|YP_001670437.1| prolyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083507|sp|B0KTK4|SYP_PSEPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166861694|gb|ABZ00102.1| prolyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 571

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFS 224



 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +     G +GK   +
Sbjct: 378 PVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEALKCQVLGENGKPVVL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++    V R+A +K+YA L
Sbjct: 438 SMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYETDVVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +E KHR     + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNLEYKHRTEQDAQALP 557

Query: 431 LEEVINYASHR 441
           L EV+ +   R
Sbjct: 558 LNEVLTFLQAR 568


>gi|331016426|gb|EGH96482.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 544

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 188/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V +  A  AAT ++   +L D+   N +  A+ +E          + LP+  
Sbjct: 231 ANIEKAEAVPREKARAAATEEL---RLVDT--PNAKTIAQLVE---------GFGLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 4/167 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLE 544


>gi|28871133|ref|NP_793752.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81840044|sp|Q87Y24|SYP_PSESM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28854383|gb|AAO57447.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 571

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 188/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAVGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V +  A  AAT ++   +L D+   N +  A+ +E          + LP+  
Sbjct: 231 ANIEKAEAVPREKARAAATEEL---RLVDT--PNAKTIAQLVE---------GFGLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINYASHR 441
           + +V+++   R
Sbjct: 558 VADVLSFIQGR 568


>gi|330968902|gb|EGH68968.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 571

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFS 224



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYETDAVREATDKLYADL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINY 437
           + +V+++
Sbjct: 558 VADVLSF 564


>gi|330975337|gb|EGH75403.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 571

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFS 224



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYETDAVREATDKLYADL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINY 437
           + +V+++
Sbjct: 558 VADVLSF 564


>gi|330872665|gb|EGH06814.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 571

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/278 (45%), Positives = 181/278 (65%), Gaps = 14/278 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             I     V +  A  AAT ++   +L D+ P+ K ++
Sbjct: 231 ANIEKAEAVPREKARAAATEEL---RLVDT-PDAKTIA 264



 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 110/191 (57%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P  A +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPAVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINYASHR 441
           + +V+++   R
Sbjct: 558 VADVLSFIQGR 568


>gi|213969174|ref|ZP_03397313.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301384830|ref|ZP_07233248.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302064183|ref|ZP_07255724.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
 gi|302130620|ref|ZP_07256610.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926172|gb|EEB59728.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 571

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 188/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V +  A  AAT ++   +L D+   N +  A+ +E          + LP+  
Sbjct: 231 ANIEKAEAVPREKARAAATEEL---RLVDT--PNAKTIAQLVE---------GFGLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TTAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRSLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINYASHR 441
           + +V+++   R
Sbjct: 558 VADVLSFIQGR 568


>gi|330950620|gb|EGH50880.1| prolyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 571

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFS 224



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYETDAVREATDKLYADL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINY 437
           + +V+++
Sbjct: 558 VADVLSF 564


>gi|47569097|ref|ZP_00239786.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47554259|gb|EAL12621.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 566

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 167/253 (66%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GLK   + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLKFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDESGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGESIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|66044647|ref|YP_234488.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|81308436|sp|Q4ZWM2|SYP_PSEU2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|63255354|gb|AAY36450.1| Prolyl-tRNA synthetase, bacterial [Pseudomonas syringae pv.
           syringae B728a]
          Length = 571

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFS 224



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYETDAVREATDKLYADL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINY 437
           + +V+++
Sbjct: 558 VADVLSF 564


>gi|255020885|ref|ZP_05292941.1| Prolyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254969676|gb|EET27182.1| Prolyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 572

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP+L+E P +AE+ SH+L+LR G I + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MRASQSFLPLLKETPAEAELVSHQLLLRGGFIRRLASGLYTWLPLGLRVLRRVEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  +Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV++D+ R 
Sbjct: 61  MDRSGAQEILMTVVQPAELWQESGRWELYGPELLRLKDRHQRDFCLGPTHEEVISDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR+REF+MKDAYSF +     +  Y  M+ +
Sbjct: 121 EIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRAREFIMKDAYSFHMDQASLEEGYRAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y R+F RLGL    + A+SG IGG  SHEF VLAD+GE  + FC
Sbjct: 181 YCRVFQRLGLDFRAVEADSGAIGGKRSHEFHVLADSGEDAIAFC 224



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 1/144 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGH+F  GT+YS  +        G++  V MG YGIG  R+VAA +E SHD +GI
Sbjct: 408 CRGIEVGHVFQLGTRYSERLGVRVLDEGGREQTVLMGCYGIGVSRIVAATVEQSHDERGI 467

Query: 339 IWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +WP+++APF++ ++ I          A  +++ RL   G     DD  E+ G QFA  DL
Sbjct: 468 VWPEALAPFRVGIVAINGRKSPAVLSAALELHDRLEAAGIPTLLDDRDERPGVQFATLDL 527

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           +G P +V+V  K ++   +E + R
Sbjct: 528 IGLPHRVVVSDKLLAQGMLEYRAR 551


>gi|225076521|ref|ZP_03719720.1| hypothetical protein NEIFLAOT_01569 [Neisseria flavescens
           NRL30031/H210]
 gi|224952200|gb|EEG33409.1| hypothetical protein NEIFLAOT_01569 [Neisseria flavescens
           NRL30031/H210]
          Length = 570

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFARLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQAELTKVHTPNVKTIESLVE 268



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRNKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W  ++APF++ ++  N K  + V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 VWTKAMAPFEVVIVPMNYKKSEAV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ EV+
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAISEVV 561


>gi|254483545|ref|ZP_05096771.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214036202|gb|EEB76883.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 580

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S + +   +E P DAE+ SH+LMLR G+I + + G+YSWLPLG + L  V  ++REE
Sbjct: 11  MRTSNFLIATQKETPADAEVISHQLMLRAGLIRKLAAGLYSWLPLGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+S+P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 71  MNAAGAQEVSMPVVQPAELWQESGRWEQYGSELLRIQDRHQRDFCLGPTHEEVITDLIRN 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K RDE+RPRFG+MRSREFLMKDAYSF  +    + +Y  M  +
Sbjct: 131 EVKSYKQLPLNMYQIQTKVRDEIRPRFGIMRSREFLMKDAYSFHASQASLEDTYQIMHGA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y ++F RLGL   P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 191 YTKVFTRLGLDFRPVIADTGSIGGSASHEFHVLANSGEDDIAFS 234



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 115/193 (59%), Gaps = 5/193 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            P +  +D+      D+ P+ K      RGIEVGHIF  GTKYS  M A     +GK+  
Sbjct: 387 CPLSQVADLREVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKAEVLNENGKNVT 446

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIY 369
           + MG YGIG  RVVAA IE +HD KGIIWP+++APF+++++  N++  + V  +  E +Y
Sbjct: 447 MTMGCYGIGVSRVVAAAIEQNHDDKGIIWPEAMAPFQLAIVPLNMQKSEAVA-NCAEALY 505

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L  VG DV  DD  E+ G +FA  +L+G P ++++G + +++ ++E K R     + +
Sbjct: 506 ANLQSVGVDVLLDDRNERPGVKFADMELIGIPHRIVIGDRALAEGQIEYKGRRDEDSQLI 565

Query: 430 SLEEVINYASHRF 442
             E+++++   + 
Sbjct: 566 PQEDIVSFLQEQL 578


>gi|330964813|gb|EGH65073.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 571

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 126/278 (45%), Positives = 181/278 (65%), Gaps = 14/278 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             I     V +  A  AAT ++   +L D+ P+ K ++
Sbjct: 231 ANIEKAEAVPREKARAAATEEL---RLVDT-PDAKTIA 264



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINYASHR 441
           + +V+++   R
Sbjct: 558 VADVLSFIQGR 568


>gi|304312891|ref|YP_003812489.1| Prolyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301798624|emb|CBL46856.1| Prolyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 574

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E+P DAE+ SHKLMLR GMI + + G+Y+W P G + L  V  I+REE
Sbjct: 1   MRASQYLLATLREDPADAEVISHKLMLRAGMIRRLAAGLYTWTPTGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P  Q A+LW ESGR+ +YG E+LR  DR+ +  + GPTHEEV++D+ R+
Sbjct: 61  MDRAGAQEVLMPVTQPAELWQESGRFQAYGPELLRFKDRHARDFVLGPTHEEVISDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE RPRFGVMR+REFLMKD+YSF +T +  + +Y  M+ +
Sbjct: 121 NVQSYKQLPANFYQIQTKFRDETRPRFGVMRAREFLMKDSYSFHMTEDCLRETYQVMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+   + A++G IGG+ SHEF VLA  GE  +  S
Sbjct: 181 YTAIFTRLGLEFRAVLADTGSIGGNNSHEFHVLASAGEDSIAFS 224



 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 116/193 (60%), Gaps = 3/193 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A +A  +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  ++ T    +GK   
Sbjct: 380 ANFAEVADLRNVVEGDPSPDGKGEILIRRGIEVGHIFQLGTKYSKALNVTVLDENGKSQV 439

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           + MG YGIG  RVVAA IE ++D +GIIWPD++APF I+LI +  H       A E +Y 
Sbjct: 440 LPMGCYGIGVSRVVAAAIEQNNDAQGIIWPDAIAPFHIALIPMNQHKSPRVHAAAEALYE 499

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G +VF+DD  E+ G +FA A+L+G P ++++G + +   +VE KHR      D+ 
Sbjct: 500 RLKQAGYEVFYDDRKERPGVKFADAELIGIPHRIVIGDRGLDQQQVEYKHRTDKETSDVG 559

Query: 431 LEEVINYASHRFS 443
           L++++ +   R +
Sbjct: 560 LDQLVEFLQTRVT 572


>gi|284799796|ref|ZP_05984887.2| proline--tRNA ligase [Neisseria subflava NJ9703]
 gi|284796829|gb|EFC52176.1| proline--tRNA ligase [Neisseria subflava NJ9703]
          Length = 595

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 26  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 86  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 146 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 206 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 261

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 262 PTLPLKG---ERAAAQAELTKVHTPNVKTIESLVE 293



 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 429 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 488

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 489 VWTKAMAPFEVVIVPMNYKKSDAV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 547

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ EV+
Sbjct: 548 LLGIPHRIVIGDRALKEGNVEYAERRNNQAQAVAVSEVV 586


>gi|254673039|emb|CBA07634.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 599

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 297



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 590


>gi|257467949|ref|ZP_05632045.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062235|ref|ZP_07926720.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313687911|gb|EFS24746.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 569

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AE ASHKL+LR  MI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MRFSKSYIKTLKETPKEAETASHKLLLRASMIKKLTSGVYTYLPLGYKALKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR+D  G  M++L DRN +  + GPTHEEV+TD+ R+
Sbjct: 61  MDRAGSQEILMPVLQPAELWKESGRWDVMGPLMMKLQDRNKRDFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     +  M  +
Sbjct: 121 DISSYKALPLSLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHATAESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GLK  P+ A+SG IGG  S EF VLAD+GE + ++C
Sbjct: 181 YSRIFSRCGLKFRPVEADSGAIGGSGSQEFHVLADSGEDEIIYC 224



 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVGHIF  G KYS  ++ATF    G+   + MG YGIG  R +A+ IE ++D  G
Sbjct: 403 SARGIEVGHIFKLGDKYSKALNATFLDDKGESKVMLMGCYGIGVSRTLASAIEQNNDEFG 462

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+ + +I  N+K  +QV     E+IY  L   G D   DD  E+ G +F  A
Sbjct: 463 IIWPTALAPYIVDVIPANVKNEEQV--KVAEEIYEALLNDGIDSMIDDRDERPGFKFKDA 520

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DL+GFP +V+ G K   +  VE+K R TG   ++S ++V++
Sbjct: 521 DLIGFPFKVVSG-KRAGEGIVELKIRRTGETLEISKDDVVS 560


>gi|121609349|ref|YP_997156.1| prolyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|152112961|sp|A1WKI1|SYP_VEREI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121553989|gb|ABM58138.1| prolyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 581

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 161/226 (71%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L++ P DAE+ SH+LM+R G+I +   GIYS++P+G + L  + AI+REE
Sbjct: 1   MKASRFFVSTLKDAPADAEVVSHQLMMRAGLIKKLGAGIYSYMPMGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAELWQETGRFDKMGPELLRIQDRHGRDFVVQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  +K SY  M  +
Sbjct: 121 ELRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPAAAKASYLVMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C +
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVVAATGEDAIVYCPQ 226



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 109/188 (57%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V A  RGIEVGH+FY GTKYS  M+A+F   +GK   ++MG 
Sbjct: 393 VADLRNVVAGDRSPDGKGVLAIERGIEVGHVFYLGTKYSRAMNASFLDENGKPQPLEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF   +  I        + A +K+YA     
Sbjct: 453 YGIGITRLPAAAIEQNHDARGIIWPDAIAPFTAVICPIGMERSAAVQAAADKLYADFLAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + ++E +HR       ++  +++
Sbjct: 513 GIDVLLDDRGERPGAMFADWELIGVPHRVVISERGLKEDQLEYQHRRDQSATKVAAADIL 572

Query: 436 NYASHRFS 443
            +   R +
Sbjct: 573 AHVKGRMT 580


>gi|332992302|gb|AEF02357.1| prolyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 554

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G +E+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGGVEVLMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG+MR REF MKDAYSF L       +Y  M+ +
Sbjct: 121 EISSYKQLPINLYQIQTKFRDEVRPRFGIMRGREFTMKDAYSFHLDDTCLDKTYQTMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+R+GL    + A+SG IGG+ SHEF VLA++GE  +  + D
Sbjct: 181 YGNIFNRMGLDYRAVIADSGSIGGNHSHEFHVLAESGEDAIAFASD 226



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 4/189 (2%)

Query: 252 WTAPYAATSDVHNEKLFDSLPE-NKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           WT     T+D+ N    D+ P+ N  +   RGIEVGHIF  G+KYS  M+       GK 
Sbjct: 363 WTVDIQ-TADLRNIVAGDASPDGNGTIEIKRGIEVGHIFQLGSKYSEAMNCGVLSETGKH 421

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKI 368
             + MG YGIG  R+VAA IE +HD  GI+WPD +APFKI+LI +  H     ++A E +
Sbjct: 422 QTLTMGCYGIGVSRIVAAAIEQNHDKYGIMWPDPIAPFKIALIPMNMHKSHRIKEAAEAL 481

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y +L  +G DV +DD  E+ G  F   +L+G P  +++G + + + ++E K+R TG ++ 
Sbjct: 482 YEQLIALGIDVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQIEYKNRRTGEKQL 541

Query: 429 MSLEEVINY 437
           + L+   ++
Sbjct: 542 LDLDSAKDF 550


>gi|152996360|ref|YP_001341195.1| prolyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083502|sp|A6VXT1|SYP_MARMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150837284|gb|ABR71260.1| prolyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 574

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/262 (47%), Positives = 172/262 (65%), Gaps = 7/262 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L++ P DA + SH+LM+R GMI Q SKG+Y+WLP G K    +  I+R+E
Sbjct: 1   MRASNYLFSTLRDAPTDAVVTSHQLMIRAGMIRQVSKGLYTWLPTGLKVFRKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G++E+ +P +Q A+LW E+GR+  YG E+LRL DR+ +    GPTHEEV+T++ R+
Sbjct: 61  MEKAGSLEVMMPGVQPAELWQETGRWQKYGPELLRLQDRHGREYCLGPTHEEVITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF MKDAYSF +  E  + +Y+ M  +
Sbjct: 121 ELTSYKQLPMNFFQIQTKFRDEVRPRFGVMRSREFCMKDAYSFHVGAESLQETYDIMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R+GL   P+RA++G IGG  SHEF VLAD+GE  +  S D  DF   + N +  
Sbjct: 181 YCNVFDRIGLNYRPVRADTGSIGGAYSHEFHVLADSGEDDIAFS-DSSDF---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDV 262
           + I L    E+  AP    ++V
Sbjct: 237 EAICLK---EKADAPTQDITEV 255



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   V  RGIEVGHIF  G +Y+  + AT    +GK   + MG 
Sbjct: 388 VADIRNVVEGDPSPDGQGTIVIKRGIEVGHIFQLGQQYAEALKATVLDENGKAQVMHMGC 447

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE + D KGI+WP+S+APF I+++ +     +  R  C+++YA L   
Sbjct: 448 YGIGVSRIVAAAIEQNFDEKGILWPESIAPFDIAIVAMNYDKSEAVRTECDRLYAELKAK 507

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +FA  +LLG P +++VG K +    +E K+R  G  ED+++ + +
Sbjct: 508 GLDVLLDDRKERPGVKFADCELLGIPHRLVVGDKGLEKGTLEYKYRKAGDNEDIAIADAV 567

Query: 436 NY 437
            +
Sbjct: 568 EF 569


>gi|260220337|emb|CBA27773.1| Prolyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 580

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPTDAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR+D  G E+LR+ DR+++  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVIQPAELWQETGRFDKMGPELLRIKDRHERDYVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQDSAKASYQVMAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 108/187 (57%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V A  RGIEVGH+FY GTKYS  M+ATF   +GK  +++MG 
Sbjct: 392 VADLRNVVEGDASPDGKGVLAIERGIEVGHVFYLGTKYSKAMNATFLDVNGKPQFMEMGC 451

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD KGIIWPD++APF + L  I        + A +K+Y  L   
Sbjct: 452 YGIGITRLPAAAIEQNHDDKGIIWPDALAPFTVVLCPINPDRFPDVKAAADKLYEELLSA 511

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G+ FA  +L+G P +V +G + + +  VE +HR       + + E+ 
Sbjct: 512 GVDVILDDRNERPGAMFADWELIGVPHRVNIGDRGLKEGVVEYQHRRESAATSVPVAEIA 571

Query: 436 NYASHRF 442
           +    R 
Sbjct: 572 SLLLGRL 578


>gi|269467800|gb|EEZ79555.1| prolyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 560

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 164/239 (68%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +   +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V AIIREE
Sbjct: 1   MKTTNLLIPTQKEAPNDAQIISHQLMIRAGLISKLASGLYSYLPMGLRVLKKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P  Q A+LW ESGR++ YG E+LR  DR+++    GPTHEEV+T +   
Sbjct: 61  MNKSGAQEVLMPVAQPAELWQESGRWEQYGPELLRFNDRHNRKFCLGPTHEEVITHLAAQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L     + +++ M  +
Sbjct: 121 YIRSYKQLPMNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLDQNSLQQTFDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  IF+RLGL   P+ A+SG IGGD S EF VLAD+GE  + C  D  D+    E   F
Sbjct: 181 YCNIFNRLGLDYRPVLADSGSIGGDNSVEFHVLADSGEDAI-CFSDRSDYAANIEKVAF 238



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 3/194 (1%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           W       +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A   G  GK 
Sbjct: 366 WQGIEFNEADLRNAVEGDVSPDGKGRLLIKRGIEVGHIFQLGTKYSQAMKANVIGESGKA 425

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKI 368
               MG YGIG  RV+AA IE +HD +GII+P+S+APF++ ++ I  +     +D  +++
Sbjct: 426 VTTTMGCYGIGVTRVIAASIEQNHDDRGIIFPESIAPFQVVIVPINYNKSTRVKDLADQL 485

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y +    G +V  DD  E+ G  FA ++LLG P ++++      +  VE K R    + +
Sbjct: 486 YRQCLDAGIEVLLDDRKERAGIMFADSELLGIPHRMVLSDTHADNGNVEYKARNNPDKVE 545

Query: 429 MSLEEVINYASHRF 442
           +  +EV+++   + 
Sbjct: 546 VKFDEVLSFIQSKL 559


>gi|330823518|ref|YP_004386821.1| Prolyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329308890|gb|AEB83305.1| Prolyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 581

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM+R G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMMRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D+ N    D  P+ K V A  RGIEVGH+FY  TKYS  M+ATF G DGK  + +MG
Sbjct: 392 AVADLRNVVAGDPSPDGKGVLAIERGIEVGHVFYLSTKYSKAMNATFLGEDGKPAFFEMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  R   EK++  L  
Sbjct: 452 CYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPIGMDRSEEVRAVAEKLHGELLA 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G+ FA  +L+G P ++ +G K + + +VE  HR       + + E+
Sbjct: 512 SGIDVILDDRGERPGAMFADWELIGVPHRITIGDKGLKEGQVEYLHRRDAGATKVGVAEI 571

Query: 435 INYASHRFS 443
           + +   R +
Sbjct: 572 LAHVKERVA 580


>gi|241763800|ref|ZP_04761846.1| prolyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241366932|gb|EER61337.1| prolyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 580

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVVQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C +
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQ 226



 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 109/187 (58%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   A  RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG 
Sbjct: 392 VADLRNVVAGDRSPDGRGELAIERGIEVGHVFYLGTKYSKGMNATFLGDDGKPAFFEMGC 451

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  +        + A EK+YA L   
Sbjct: 452 YGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVICPVGMDRSDAVKAAAEKLYADLLAA 511

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V +G K + +  VE +HR       +++ +++
Sbjct: 512 GVDVILDDRGERPGAMFADWELIGVPHRVTIGDKSLKEGVVEYQHRRDAAATKVAVADIL 571

Query: 436 NYASHRF 442
                R 
Sbjct: 572 ARVKGRM 578


>gi|325140439|gb|EGC62960.1| prolyl-tRNA synthetase [Neisseria meningitidis CU385]
          Length = 599

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERAAAQAELTKVHTPNVKTIESLVE 297



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F    KY+  M+  F   +GK   ++MG YGIG  RVVAA IE ++D KGII
Sbjct: 434 RGIEVGHVFQLRDKYTHAMNVNFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGII 493

Query: 340 WPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           W  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 494 WTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 552

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LG P ++++G + + +  VE   R     + +++ E++
Sbjct: 553 LGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 590


>gi|145803|gb|AAA23710.1| RNA synthesis factor (drpA) [Escherichia coli]
          Length = 516

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 151/204 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+++P  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKHVPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG 204
           Y +IF R+GL    ++A++G IGG
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGG 204



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 3/132 (2%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P  + + +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 383 VADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 443 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 502

Query: 376 GCDVFWDDMGEQ 387
           G +V  DD  E+
Sbjct: 503 GIEVLLDDRKER 514


>gi|319761647|ref|YP_004125584.1| prolyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|317116208|gb|ADU98696.1| prolyl-tRNA synthetase [Alicycliphilus denitrificans BC]
          Length = 581

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM+R G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMMRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D+ N    D  P+ K V A  RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG
Sbjct: 392 AVADLRNVVAGDPSPDGKGVLAIERGIEVGHVFYLGTKYSKAMNATFLGEDGKPAFFEMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  R   EK++  L  
Sbjct: 452 CYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPIGMDRSEEVRAVAEKLHGELLA 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G+ FA  +L+G P ++ +G K + + +VE  HR       + + E+
Sbjct: 512 SGIDVILDDRGERPGAMFADWELIGVPHRITIGDKGLKEGQVEYLHRRDAGATKVGVAEI 571

Query: 435 INYASHRFS 443
           + +   R +
Sbjct: 572 LAHVKERVA 580


>gi|296314467|ref|ZP_06864408.1| proline--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838764|gb|EFH22702.1| proline--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 570

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 181/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTAYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L    E+ TA +A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG--ERATA-HAELTKVHTPNVKTIESLLE 268



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKTMAPFEVVIVPMNYKKSDAV-REATDKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRDNEVQAVAIGEIV 561


>gi|325128468|gb|EGC51349.1| prolyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 570

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A    VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQAELVKVHTPNVKTIESLVE 268



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 561


>gi|152981235|ref|YP_001354678.1| prolyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166980130|sp|A6T2D1|SYP_JANMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151281312|gb|ABR89722.1| prolyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 577

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKKIGSGIYTYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q A+LW E+GR+D  G E++R+ DR+ +     PT EEV+TD+ R+
Sbjct: 61  MNNAHAIELLMPLVQPAELWQETGRWDKMGAELMRVKDRHGREFAIQPTSEEVVTDVVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  MF +
Sbjct: 121 EIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDIDGLKKSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y++IF+R GL+   + A++G IGG  SHEF V+ADTGE   V+C
Sbjct: 181 YVKIFNRFGLQFRAVAADNGAIGGSGSHEFHVIADTGEDALVYC 224



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 109/193 (56%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    D  P+ K   A  RGIEVGH+F  GT YS  M AT+   +GK   +
Sbjct: 385 PEAQVFDIRNVVEGDPSPDGKGTLAIQRGIEVGHVFQLGTAYSESMKATYLDENGKPQLI 444

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D KGIIWP ++APF++ L  +     +  +   +K+Y  
Sbjct: 445 QMGCYGIGVTRILGAAIEQNFDDKGIIWPTALAPFEVVLCPMGYDRSEGVKAETDKLYEA 504

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G+ FA  +L+G P ++++G + + + K+E + R       ++L
Sbjct: 505 LQAAGVDVILDDRGERPGAMFADWELIGVPHRIVIGDRGLKEGKLEYQGRRDAAATPVAL 564

Query: 432 EEVINYASHRFSN 444
           EE++ +   + +N
Sbjct: 565 EEMLGFVQAKLAN 577


>gi|312143669|ref|YP_003995115.1| prolyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904320|gb|ADQ14761.1| prolyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 568

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  +LP L+E+P +A+I SHKLMLR G++  HS GIYS+LPLG + +  +  I R+ 
Sbjct: 1   MRMSNLYLPTLKEDPAEADITSHKLMLRAGLMRNHSAGIYSYLPLGYRVIKKIENITRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +P LQ+A +W +S R+D +G  M+RL DR D+    GPTHEEV+TD+ + 
Sbjct: 61  MDASGAQEVLLPILQTAQIWKDSKRWDKFGPLMMRLRDRKDREYCLGPTHEEVVTDLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP   YQIQ K RDE+RPRFGVMR REF+MKDAYS D+  EG   SY  M+ +
Sbjct: 121 EIRSYKDLPLNLYQIQTKVRDEIRPRFGVMRGREFIMKDAYSLDIDYEGLDKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y + F   GL ++ + A++G +GG  SHEF+VLAD+GE QV FC
Sbjct: 181 YEKTFAECGLDAVAVEADTGAMGGKDSHEFMVLADSGEDQVAFC 224



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 89/137 (64%), Gaps = 1/137 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M A +   +G+   + MGSYGIG  R+VAA IE ++D  GIIW
Sbjct: 404 GIEVGHIFKLGTKYSENMGANYLDENGRTQPIVMGSYGIGITRLVAAAIEQNNDEYGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++AP++I ++ +  +D+   +  E+IY  L   G +V  DD  E+ G +F  ++L+G 
Sbjct: 464 PKAIAPYQIIILAL-GNDEAVAEKSEEIYQELEAEGWEVLLDDRKERAGVKFNDSELIGI 522

Query: 401 PLQVIVGSKFVSDSKVE 417
           PL++ +GS+ + + ++E
Sbjct: 523 PLRLTIGSRSLENGEIE 539


>gi|327441016|dbj|BAK17381.1| prolyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 568

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 174/263 (66%), Gaps = 10/263 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+++K F+P L+ENP DA++ SH+++LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQTKTFIPTLRENPSDADVKSHRMLLRAGFIRQNAAGVYSYLPLARRVLSKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P LQ A+LW ESGR+++YG E++RL DR+D+    G THEEV+T + R 
Sbjct: 61  MEAINSIELLMPALQPAELWQESGRWEAYGPELMRLKDRHDRDFALGATHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHSSRESLDATYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +            S+ +D+ 
Sbjct: 181 YSNIFTRLGLNFRAVIADAGTIGGKGTHEFMVLSEIGEDTIAY----------SDTSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVH 263
             I +  +V ++TAP     D+ 
Sbjct: 231 ANIEMAEVVVEYTAPTTPMKDIE 253



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 1/167 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GT YS  ++ATF    GK     MG YGIG  R++AAV E   D  G 
Sbjct: 403 AEGIEVGHIFKLGTTYSEKLNATFLDEQGKAKPYIMGCYGIGVSRILAAVAEHFQDENGF 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP  +AP+ + L+ + A D+      +++Y  L     +V +D+  E+ G +FA ADL+
Sbjct: 463 VWPAQLAPYDLQLVPVNAKDEAQVQLADELYGVLKSYRYEVLYDNRAERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P+++ VG K  S+  VE+K R TG   + + EEV++  +  F  N
Sbjct: 523 GLPVRITVGKK-ASEGLVEVKFRSTGESAEWAKEEVVDRLNEYFRQN 568


>gi|327270906|ref|XP_003220229.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Anolis carolinensis]
          Length = 472

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 153/428 (35%), Positives = 235/428 (54%), Gaps = 37/428 (8%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           S +LML  G+I   S G Y ++P   +A++ +  +I +E    G  +M++PTL SA LW 
Sbjct: 67  SQRLMLLGGLICPASPGCYHYMPYAVRAMEKLIKVIDQEMQAIGGQKMNMPTLCSAKLWR 126

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFR 140
           +SGR++  GKE+LR+ DR+ +    GPTHEE +TD+  S    SY+ LP   YQ+  KFR
Sbjct: 127 DSGRWELMGKELLRMKDRHGQEYCLGPTHEEAITDLIASQGCLSYKQLPLLLYQVTRKFR 186

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE +PRFG++R REF MKD Y+FD + E +  +Y  +  +Y  IF+ LGL+ I ++A +G
Sbjct: 187 DEPKPRFGLLRGREFYMKDMYTFDASKEAALQTYECVSNAYSNIFNNLGLQFIKVQAATG 246

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            IGG +SHEF + A+ GE Q+          +   N DF                 A   
Sbjct: 247 SIGGTMSHEFQLPAEVGEDQL----------MMCANCDFS----------------ANVE 280

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +++ ++   + + K + ++GIEVGH F+ GTKYS   +AT   A  K    +MG YG+G
Sbjct: 281 TMNSNEMGCPVCKGKLIESKGIEVGHTFFLGTKYSSVFNATVHTAQNKPVSAEMGCYGLG 340

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA--CEKIYARLS----K 374
             R++AA IE       I WPD +AP+++ LI  K      + A   E++Y  +S    +
Sbjct: 341 VSRILAASIEVLSTEDAIRWPDLIAPYQVCLIPPKKGSNEEKGAILLEELYDFISETVPR 400

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSL 431
           +  ++  DD     IG +   A+ LG+P  VI+G K V D  S  E+ ++ TG    ++ 
Sbjct: 401 LKNEMVLDDRTRLTIGKRLKDANKLGYPY-VIIGGKKVFDKPSLFELHNQNTGEILFLTK 459

Query: 432 EEVINYAS 439
           E +I+  S
Sbjct: 460 EAIIDLLS 467


>gi|254669934|emb|CBA04522.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha153]
          Length = 570

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A    VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQAELVKVHTPNVKTIESLVE 268



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAIAIGEIV 561


>gi|330959255|gb|EGH59515.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 571

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 189/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 181 YSNIFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V + T+  AAT ++   +L D+   N +  A+ +E          + LP+  
Sbjct: 231 ANIEKAEAVPRETSRPAATEEL---RLVDT--PNAKTIAQLVE---------GFGLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +++YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDRLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TGAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINYASHR 441
           + +V+++   R
Sbjct: 558 VADVLSFIQGR 568


>gi|308068985|ref|YP_003870590.1| Prolyl-tRNA synthetase class II (Proline--tRNA ligase class II)
           [Paenibacillus polymyxa E681]
 gi|305858264|gb|ADM70052.1| Prolyl-tRNA synthetase class II (Proline--tRNA ligase class II)
           [Paenibacillus polymyxa E681]
          Length = 579

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 161/226 (71%), Gaps = 2/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  L  L+E P +AE+ SH+LMLR G I Q + G+Y+++PLG++ L  V  I+R+E
Sbjct: 1   MRQSQLLLTTLREAPAEAEVISHQLMLRGGFIRQLAAGMYTYMPLGRRVLRKVEQIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ  +LW ESGRYD YG E++RL DR+D+    GPTHEEV+T + R+
Sbjct: 61  MDRAGAGELLMPVLQPTELWQESGRYDVYGPELMRLQDRHDREFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++RSREFLMKDAYSFD   EG  H+Y  MF +
Sbjct: 121 EVNSYRKLPVTLYQIQTKFRDERRPRFGLLRSREFLMKDAYSFDAHWEGLDHTYWTMFRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGE-TQVFCS 224
           Y RIF R GL    + A++G IGG+  +HEF+ LAD GE T V C+
Sbjct: 181 YHRIFTRCGLYFRAVEADAGAIGGEGETHEFMALADIGEDTIVACT 226



 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GH+F  GTKYS  + ATF  A G +  + MG YGIG  R+++A++E +HD  G+IW
Sbjct: 419 GIEIGHVFKLGTKYSEKLGATFLDAFGTEQAMIMGCYGIGVSRILSAIVEQNHDQNGMIW 478

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++APF++ +I I   D++     EK+Y +L   G +V  DD  E+ G +F  +DL+G 
Sbjct: 479 PYALAPFQVHIIPISVKDRLQMQIAEKLYNQLQDRGVEVLLDDREERPGVKFKDSDLVGI 538

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           P++++VG K     KVE+  R +  +E + +E++
Sbjct: 539 PVRIVVG-KDAEHGKVELVERKSCNKETIHIEDI 571


>gi|228940907|ref|ZP_04103466.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973836|ref|ZP_04134412.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980425|ref|ZP_04140735.1| Prolyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228779245|gb|EEM27502.1| Prolyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785861|gb|EEM33864.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818743|gb|EEM64809.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941586|gb|AEA17482.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 566

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 167/253 (66%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V+ +T
Sbjct: 231 ANIEMAPVVDTYT 243



 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQIYITN 563


>gi|313668476|ref|YP_004048760.1| prolyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313005938|emb|CBN87395.1| prolyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 570

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 176/273 (64%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A  A    VH  N K  DSL
Sbjct: 237 PTLPLKG---ERAAAQAELVKVHTPNVKTIDSL 266



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWAKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRENEAQAVAIGEIV 561


>gi|325266259|ref|ZP_08132938.1| proline--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982221|gb|EGC17854.1| proline--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 569

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A + SHKLMLR G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALPSHKLMLRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVIQPADLWKESGRWDFYGDELLRITDRHDNEFCFSPTCEEMVTDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADFASLQETYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y R+F RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+
Sbjct: 181 YCRVFGRLGLNFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDASDY 229



 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 3/145 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KYS  ++A+F   +GK   ++MG YGIG  RVVAA IE +HD +GI
Sbjct: 404 ARGIEVGHVFQLRDKYSAALNASFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNHDERGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW D++APF   ++  N K  + V R+A +KIYA L   G DV  DD  E+ G   A ++
Sbjct: 464 IWTDTMAPFAAVIVPMNYKKSEAV-REAADKIYADLLAAGVDVLLDDRDERAGVLLADSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           LLG P ++++G + + +  VE   R
Sbjct: 523 LLGIPHRIVIGDRGLKEGNVEYARR 547


>gi|313893443|ref|ZP_07827015.1| proline--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442084|gb|EFR60504.1| proline--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 572

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 161/226 (71%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEIITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G + SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLEESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF+R GL   P+ A+SG IGG  +HEF+ +A+ GE   V+C+K
Sbjct: 181 YTRIFNRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTK 226



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 126/253 (49%), Gaps = 24/253 (9%)

Query: 201 PIGGDLSHEFIVLADTG--ETQVFCS----KDFMDFPI-PSENTDFDDII--SLNSIVEQ 251
           P+G   + EF ++ D    ET   C     KD     I P  + + +DII   +  I + 
Sbjct: 334 PVGLQQTEEFTIVVDESVMETYNVCGGANKKDAHYVNINPKRDFNVEDIIVAPIRLITKD 393

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
              P    S  H               A+GIEVG +F  GTKYS  + ATF   +G+ + 
Sbjct: 394 DVCPTCGGSLEH---------------AKGIEVGQVFKLGTKYSEALQATFLDQNGRPNP 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R +AA IE  HD  GIIWP S+APF+  ++ I A D+      E IY+ 
Sbjct: 439 MIMGCYGIGVSRTLAAAIEQYHDENGIIWPRSIAPFEAVIVPINAKDEALMSTSETIYSA 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G DV  DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R TG     ++
Sbjct: 499 LQEAGVDVLLDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKTGEALSCAI 558

Query: 432 EEVINYASHRFSN 444
           + V    +    N
Sbjct: 559 DSVATKVTELLQN 571


>gi|210633121|ref|ZP_03297688.1| hypothetical protein COLSTE_01601 [Collinsella stercoris DSM 13279]
 gi|210159275|gb|EEA90246.1| hypothetical protein COLSTE_01601 [Collinsella stercoris DSM 13279]
          Length = 569

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 112/224 (50%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E+P +AE+ASH+LMLR G+I + + G+YS+LPL  ++L  +  I+R+E
Sbjct: 1   MKMSKLYAPTLKEDPAEAELASHRLMLRAGLIRKQAAGLYSYLPLAWRSLRKIEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A +W ESGRY++YG E++R+ DR+D+  + GPTHEE +TD+ ++
Sbjct: 61  MDAAGAQELLMPIMVDAQVWRESGRYNAYGPELMRIDDRHDREFVLGPTHEETVTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF+ T E  + +Y++M  +
Sbjct: 121 ELKSYKQLPVNLYQIQDKFRDEMRPRFGLMRGREFIMKDGYSFNATQESLQETYDEMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y  I  R GLK++P+ A+SG IGGD S EF+ LAD GE   V+C
Sbjct: 181 YANICERCGLKALPVVADSGQIGGDTSVEFMALADAGEAALVYC 224



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 99/158 (62%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
             ARGIEV  +F  GTKYS  M ATF   +G++    MG YG+G  R +AA +E  HDG 
Sbjct: 399 AGARGIEVSQVFQLGTKYSEAMGATFADENGEEKPFLMGCYGVGVSRTLAASVEQHHDGH 458

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP S+AP+++S++ +    + C + C ++   L   G +V  DD   + G +FA  D
Sbjct: 459 GIIWPVSIAPYEVSIMPLDPTIEECAEVCARLTDELCAAGIEVIVDDRDIRPGVKFADND 518

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L+GFP Q+++G + + +  VE+K R TG RED++++EV
Sbjct: 519 LMGFPYQIVLGKRGLKNGTVELKDRATGEREDVAIDEV 556


>gi|88810462|ref|ZP_01125719.1| prolyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88792092|gb|EAR23202.1| prolyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 569

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + + L   +E P DAEI SH+LMLR G+I +   G+Y+WLPLG + L NV  ++REE
Sbjct: 1   MRVTGFPLFTSREIPADAEIISHQLMLRAGLIARLGAGLYTWLPLGLRVLRNVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDRIGSLEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHAREFCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP T+YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L     + +Y  M  +
Sbjct: 121 EIHSYRQLPVTYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDQASLEATYRAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RL L    +RA++G IGG +S EF VLAD+GE  +   +
Sbjct: 181 YSRIFQRLNLDFRAVRADTGAIGGSVSEEFHVLADSGEDAIAVCR 225



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G KYS  M A      G    + MG YGIG  RVVAA IE +HD +GII
Sbjct: 403 RGIEVGHVFQLGAKYSESMDARVLNEHGDQVPMIMGCYGIGVSRVVAAAIEQNHDERGII 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +APF++++++I AH  +   +  E+++  L   G +  WDD   + G +FA  +L+
Sbjct: 463 WPTPLAPFQVAIVSINAHRSEAVHNEAERLHEALGAAGLEPLWDDREARPGVKFADMELI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P ++++  + +S   VE + R       +  E V+ +
Sbjct: 523 GIPHRLVISDRGLSAGTVEYRGRSEPTSRHLPCERVVEF 561


>gi|331007686|ref|ZP_08330821.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418506|gb|EGG93037.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 579

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 120/247 (48%), Positives = 168/247 (68%), Gaps = 4/247 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR G++ + + G+Y+W+PLG + L  V  IIREE
Sbjct: 1   MRASRFLLSTSKETPADAEVISHQLMLRAGLVRKLASGLYTWMPLGLRVLRKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNKSGAQEVLMPVVQPAELWQESGRWQEYGPELLRIKDRHQREFCLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF +     + +Y+ M  +
Sbjct: 121 DVNSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHIDQASLQDTYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL   P+ A++G IGG  SHEF VLA +GE  +  S D  D+   + N +  
Sbjct: 181 YCNIFDRIGLDYRPVIADNGSIGGSGSHEFHVLASSGEDDIAFS-DGSDY---AANVEMA 236

Query: 241 DIISLNS 247
           + I  N+
Sbjct: 237 EAIETNT 243



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 4/181 (2%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N  + D  P  K      RGIEVGHIF  GTKYS  M+AT    +GK   + MG YG
Sbjct: 393 DIRNVMVGDPSPCGKGTLDIKRGIEVGHIFQLGTKYSESMNATVLDQNGKAQAITMGCYG 452

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC-RDACEKIYARLSKVGC 377
           IG  RVVAA IE +HD  GIIWP ++APF+++LI I AH      + C+ +Y  L   G 
Sbjct: 453 IGVTRVVAAAIEQNHDDNGIIWPSALAPFQVALIPINAHKSAAVSEKCDVLYKELQAAGY 512

Query: 378 DVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DV + D+   ++G   A  +L+G P +++VG + + + +VE K R    ++++    V++
Sbjct: 513 DVIYMDEPKARLGVMLADTELVGIPHRIVVGDRGLENGQVEYKGRRDSEKQEIDAGSVVD 572

Query: 437 Y 437
           +
Sbjct: 573 F 573


>gi|312962836|ref|ZP_07777323.1| prolyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311282863|gb|EFQ61457.1| prolyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 571

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 175/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G K +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLKVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--DF----------- 227
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S   D+           
Sbjct: 181 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSNGSDYAANIEKAEAIP 240

Query: 228 --MDFPIPSEN---TDFDDIISLNSIVEQWTAPYAAT 259
                P P+E     D  D  ++ ++VE++  P   T
Sbjct: 241 RETSRPAPAEELRLVDTPDTKTIAALVEKFNLPIEKT 277



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 110/192 (57%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAMKCEVLGENGKPITL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE ++D KGIIW D++APF+++L+ ++   +  R+A +K+YA L
Sbjct: 438 DMGCYGIGVSRVVAAAIEQNNDDKGIIWSDALAPFQVALVPLRYETEQVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +E K R     + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNLEYKSRTEAEAQPLP 557

Query: 431 LEEVINYASHRF 442
           + +V+++   R 
Sbjct: 558 VADVLSFLQARI 569


>gi|73956414|ref|XP_546694.2| PREDICTED: similar to prolyl-tRNA synthetase
           (mitochondrial)(putative) [Canis familiaris]
          Length = 632

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 230/433 (53%), Gaps = 35/433 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    S +LM + G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  
Sbjct: 222 DLTCKSQRLMQQVGLIYPASPGCYHLLPYTVRAMEKLQRVIDQEMQAIGGQKVNMPSLSP 281

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQI 135
           A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S    SYR LPF  YQ+
Sbjct: 282 AELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAVTALVASQKTLSYRQLPFLLYQV 341

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y  +  +Y  +F RLGL+ I +
Sbjct: 342 TRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARQTYGLVCGAYSSLFRRLGLRCIRV 401

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +A+ G IGG  SHEF + AD GE +      F   P    + + + +      + Q   P
Sbjct: 402 QADVGSIGGTASHEFQLPADIGEDR------FAVCPSCGFSANMETL-----RLSQTDCP 450

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                            ++    ARGIEVGH FY GTKYS   +A F  A G+    +MG
Sbjct: 451 AC---------------QSPLTEARGIEVGHTFYLGTKYSSIFNAQFTDAQGRPCPAEMG 495

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLS 373
            YG+G  R++AA IE       I WP  +AP+++ LI  K  + ++V  +    +Y  ++
Sbjct: 496 CYGLGVTRILAAAIEVLSTEDCIRWPGLLAPYQVCLIPPKKGSKEEVATELTGHLYDLIT 555

Query: 374 ----KVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRE 427
               ++  +V  DD   + IG++   A+  G+P  +I G + + D +  E+  + TG   
Sbjct: 556 EAVPQLRGEVLLDDRTHRTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWSQNTGEVV 615

Query: 428 DMSLEEVINYASH 440
            ++ E V  + S 
Sbjct: 616 FLTREGVTEFLSQ 628


>gi|269213497|ref|ZP_06158007.1| proline--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269146261|gb|EEZ72679.1| proline--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 594

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/273 (46%), Positives = 178/273 (65%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 25  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 85  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 145 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 205 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANVELA 260

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A     + VH  N K  DSL
Sbjct: 261 PTLPLKG---ERAAAQVELTKVHTPNVKTIDSL 290



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 428 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 487

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 488 IWTKAMAPFEVVIVPMNYKKSDAV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 546

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + + + E++
Sbjct: 547 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQSVPIGEIV 585


>gi|15677205|ref|NP_274358.1| prolyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|81857571|sp|Q9JZ14|SYP_NEIMB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7226583|gb|AAF41714.1| prolyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|325134423|gb|EGC57068.1| prolyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325200038|gb|ADY95493.1| prolyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 570

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 176/273 (64%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A  A    VH  N K  DSL
Sbjct: 237 PTLPLKG---ERAAAQAELVKVHTPNVKTIDSL 266



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIV 561


>gi|30249296|ref|NP_841366.1| prolyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718]
 gi|81838727|sp|Q82UZ8|SYP_NITEU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30180615|emb|CAD85228.1| Prolyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 568

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P +AE+ SH+LMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFLATLKEAPAEAELISHRLMLRAGLIKRLGSGLYTWMPLGLRILHKIEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +  A+LW E+GR+D +G +ML++ DR+     +GPTHEEV+ DI R 
Sbjct: 61  MNNSGALELLMPAVHPAELWQETGRWDVFGPQMLKIQDRHKHDFCFGPTHEEVIVDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  + +Y  M  +
Sbjct: 121 EIKSYRQLPINFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHADVDSLEQTYRLMQET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  + FC
Sbjct: 181 YSRIFTRIGLKFRAVAADTGAIGGSGSHEFHVLADSGEDAIAFC 224



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 104/182 (57%), Gaps = 3/182 (1%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K V    RGIEVGH+F   TKYS  M AT+    G+   ++MG YG
Sbjct: 382 DIRNIVAGDPSPDGKGVLEICRGIEVGHVFQLRTKYSEKMKATYLDESGQTRIMEMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGC 377
           IG  R+VAA IE ++D +GII+P ++APF++S+I +  H  Q  R   EK+Y      G 
Sbjct: 442 IGVSRIVAAAIEQNYDERGIIFPQTIAPFQLSIIPVGYHKSQQVRTEAEKLYQACRSAGI 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G  FA  +L+G P ++++G + + +  VE + RL    + +SL E  + 
Sbjct: 502 EVLLDDREERPGVMFADQELIGIPHRIVIGERNLREGMVEYQGRLDKTPQMLSLSEAASI 561

Query: 438 AS 439
            S
Sbjct: 562 IS 563


>gi|75760863|ref|ZP_00740877.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218898971|ref|YP_002447382.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228902322|ref|ZP_04066479.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228966764|ref|ZP_04127808.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|226731427|sp|B7IUH7|SYP_BACC2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|74491647|gb|EAO54849.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218543850|gb|ACK96244.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228792863|gb|EEM40421.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228857291|gb|EEN01794.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 566

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEKGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|332247927|ref|XP_003273115.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial [Nomascus
           leucogenys]
          Length = 475

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 144/412 (34%), Positives = 219/412 (53%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKFDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F+RLG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSI 248
           L  + ++A+ G IGG +SHEF +  D GE ++  C +    F    E  DF         
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEDRLAICPR--CSFSANMETLDFS-------- 288

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             Q   P                 +      +GIEVGH FY GTKYS   +A F    GK
Sbjct: 289 --QMNCPAC---------------QGPLTKTKGIEVGHTFYLGTKYSSIFNAQFTNVYGK 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       + WP  +AP++  LI  K  + ++   +   
Sbjct: 332 PTLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELIG 391

Query: 367 KIYARLS----KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           ++Y  ++    ++  +V  DD     IG++   A+  G+P  +I G + + D
Sbjct: 392 QLYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALED 443


>gi|229047505|ref|ZP_04193095.1| Prolyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229081074|ref|ZP_04213584.1| Prolyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229111290|ref|ZP_04240843.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229191988|ref|ZP_04318958.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228591539|gb|EEK49388.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228672066|gb|EEL27357.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228702118|gb|EEL54594.1| Prolyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228723752|gb|EEL75107.1| Prolyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 566

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|83647457|ref|YP_435892.1| prolyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|114152199|sp|Q2SD07|SYP_HAHCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83635500|gb|ABC31467.1| prolyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 574

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASRYLIATLKETPADAEVISHQLMLRAGMIRKLAAGLYTWLPLGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW+ESGR++ YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDRSGAQEVLMPAVQPAELWIESGRWEQYGGELLRIHDRHNRDFCVGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ+KFRDE RPRFG+MR+REFLMKDAYSF +  E    +Y  M+ +
Sbjct: 121 ELKSYKQLPANFYQIQMKFRDERRPRFGIMRAREFLMKDAYSFHVNQESLDETYMVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL   P++A+SG IGG  SHEF VLA++GE  +  S +
Sbjct: 181 YTRIFTRFGLDFRPVQADSGSIGGSSSHEFHVLANSGEDLIAFSTE 226



 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 114/187 (60%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+ N    D  P+ K V    +GIEVGH+F  G KYS  M+AT    +GK   +QMG 
Sbjct: 386 TADLRNVVEGDLSPDGKGVLVLKKGIEVGHVFKLGDKYSSAMNATVLDENGKATVMQMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  RVVAA IE  HD KGIIWPD++APF+++L+ +  H   V R+  E +YA L + 
Sbjct: 446 YGIGVSRVVAAAIEQGHDDKGIIWPDALAPFEVALVPLNMHKSDVVREKAESLYAELLQA 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +FA  +L+G P +V++  + +++ KVE K R      DM+++ V+
Sbjct: 506 GVDVLLDDRNERPGVKFAEMELIGIPHRVVISDRGLAEGKVEYKGRRDTDSTDMTVDTVV 565

Query: 436 NYASHRF 442
           N+   + 
Sbjct: 566 NFIKEKL 572


>gi|319638108|ref|ZP_07992872.1| prolyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400753|gb|EFV81410.1| prolyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 570

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 179/275 (65%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  +  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQSELTKVHTPNVKTIESLVE 268



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYAKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDAV-REAADKIYAGLLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ EV+
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAVSEVV 561


>gi|253995828|ref|YP_003047892.1| prolyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253982507|gb|ACT47365.1| prolyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 573

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/260 (46%), Positives = 171/260 (65%), Gaps = 12/260 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P +AE+ SH LM+R G+I +   G+YSW+PLG + L  V  ++REE
Sbjct: 1   MRASQFFFNTQKEAPNEAELQSHILMVRAGLIKRLGSGLYSWMPLGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MNNAGALELLMPAVQPKELWEETGRWAVFGPQMLKIQDRHEREFCFGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EIRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHTDFASLEQTYDTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y  +F RLGLK   ++A++G IGGD SHEF VLAD+GE  + +C           E +DF
Sbjct: 181 YSNVFTRLGLKFRAVKADTGAIGGDGSHEFHVLADSGEDGLAYC-----------ETSDF 229

Query: 240 DDIISLNSIVEQWTAPYAAT 259
              + L   +   T+  AA 
Sbjct: 230 AANVELAEAIPASTSRSAAA 249



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 108/182 (59%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V +  RGIEVGHIF   TKYS  MSAT+   +G+   ++MG 
Sbjct: 387 VADIRNVVAGDASPDGKGVLSLCRGIEVGHIFQLRTKYSEAMSATYLDENGQTQVMEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE  +D +GII+P S+APF++ +  I     +  + A +K++  L   
Sbjct: 447 YGIGVSRIVGAAIEQGNDERGIIFPKSMAPFEVVICAIGYDKSEAVQAATKKLHDELQAA 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G  FA ADL+G P ++++G + +++  VE K R     + ++L  V+
Sbjct: 507 GVDVLLDDRGERPGVMFAEADLMGIPHRLVIGERGLNEGNVEYKARTQADAQSVALASVV 566

Query: 436 NY 437
            +
Sbjct: 567 EF 568


>gi|70728636|ref|YP_258385.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|114152231|sp|Q4KH98|SYP_PSEF5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68342935|gb|AAY90541.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 571

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 175/277 (63%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--DF----------- 227
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S   D+           
Sbjct: 181 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSNGSDYAANIEKAEAVP 240

Query: 228 --MDFPIPSEN---TDFDDIISLNSIVEQWTAPYAAT 259
                P P+E     D  D  ++ ++VE++  P   T
Sbjct: 241 RETSRPAPAEELRLVDTPDTKTIAALVEKFNLPIEKT 277



 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAMKCEVLGENGKPVTL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +MG YGIG  RVVAA IE ++D  GIIW D++APF+I+L+ ++   +  R+A +K+Y+ L
Sbjct: 438 EMGCYGIGVSRVVAAAIEQNNDANGIIWSDTLAPFQIALVPLRYETEQVREATDKLYSEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTEAEAQALP 557

Query: 431 LEEVINYASHRF 442
           + +V+++   R 
Sbjct: 558 VADVLSFLQARI 569


>gi|218235963|ref|YP_002368620.1| prolyl-tRNA synthetase [Bacillus cereus B4264]
 gi|226731428|sp|B7HDU2|SYP_BACC4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218163920|gb|ACK63912.1| proline--tRNA ligase [Bacillus cereus B4264]
          Length = 566

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 100/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++++EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVNVEELQTYIAN 563


>gi|316984142|gb|EFV63120.1| prolyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 599

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 176/273 (64%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A  A    VH  N K  DSL
Sbjct: 266 PTLPLKG---ERAAAQAELVKVHTPNVKTIDSL 295



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIV 590


>gi|297617181|ref|YP_003702340.1| prolyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145018|gb|ADI01775.1| prolyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 567

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F P L+E+P +AE  SH+L+ R GM+ + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MKASELFFPTLREDPAEAETVSHRLLFRAGMVRKTAAGIYTYLPLGFRVIKKIMNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q  +LW +SGR++ YG EM RL DR+ +    GPTHEEV+TD+   
Sbjct: 61  MDRAGGQEVGLPIIQPRELWAQSGRWEVYGDEMFRLKDRHQRDFCLGPTHEEVITDVVNH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ K+RDE+RPRFG++R REF+MKD YSFD+   G + SY KM+ +
Sbjct: 121 EVHSYRDLPLLLYQIQNKYRDEIRPRFGLLRGREFIMKDLYSFDVDEAGLEVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y R+F RLGL+   + A+SG IGG++SHEFIVLA TGE+  VFC
Sbjct: 181 YCRVFERLGLQYRVVEADSGAIGGNVSHEFIVLAPTGESVIVFC 224



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 258 ATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  D+ N +  D  P   E K  + RGIE GHIF  GTKYS  M ATF   +GK+  + M
Sbjct: 377 AFCDLRNAEEGDICPVCREGKLKATRGIETGHIFKLGTKYSGKMGATFLDENGKERLMVM 436

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +AA +E +HD  GIIWP ++AP++I ++ + + D    +   K+Y  L K
Sbjct: 437 GCYGIGISRTMAAAVEQNHDENGIIWPLAIAPYQIIIVPVNSKDGQQMEIGMKLYHELVK 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G +V  DD  ++ G +F  ADL+G P+++ +G K +   +VEIK R
Sbjct: 497 QGYEVIIDDRDQRAGVKFKDADLIGVPVRITIGPKLLKAGQVEIKKR 543


>gi|296113641|ref|YP_003627579.1| prolyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921335|gb|ADG61686.1| prolyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|326568678|gb|EGE18749.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 572

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 172/264 (65%), Gaps = 12/264 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D          +DF 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD----------SDFA 230

Query: 241 DIISLNSIV--EQWTAPYAATSDV 262
             I L   V  ++  AP  A +DV
Sbjct: 231 ANIELAEAVCYDKRAAPTQARTDV 254



 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 8/183 (4%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K V +  RGIEVGHIF  G KYS  ++ +  G +GK   + MG YG
Sbjct: 387 DIRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPVTLMMGCYG 446

Query: 319 IGAMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE +HD  GIIW       DS+APF ++++ +K+ D       + +Y  L
Sbjct: 447 IGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAKAQSLYQTL 506

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG ++ +SL+
Sbjct: 507 KARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATGDQQMLSLD 566

Query: 433 EVI 435
           E++
Sbjct: 567 ELL 569


>gi|229152018|ref|ZP_04280213.1| Prolyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228631367|gb|EEK88001.1| Prolyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 566

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 100/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++++EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVNVEELQTYIAN 563


>gi|71736091|ref|YP_275923.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257487021|ref|ZP_05641062.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298488219|ref|ZP_07006255.1| Prolyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|114152230|sp|Q48FB4|SYP_PSE14 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71556644|gb|AAZ35855.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157277|gb|EFH98361.1| Prolyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320323063|gb|EFW79152.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329665|gb|EFW85654.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330892229|gb|EGH24890.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020]
 gi|330988958|gb|EGH87061.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009335|gb|EGH89391.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 571

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 190/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +          + S+ +D+ 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDI----------VFSDGSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V +  A  AAT ++   +L D+   N +  A+ +E          + LP+  
Sbjct: 231 ANIEKAEAVPREKARPAATEEL---RLIDT--PNAKTIAQLVE---------GFDLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINY 437
           + +V+++
Sbjct: 558 VADVLSF 564


>gi|228960035|ref|ZP_04121699.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799551|gb|EEM46504.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 566

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKAQLLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|228954095|ref|ZP_04116124.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071317|ref|ZP_04204540.1| Prolyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228711771|gb|EEL63723.1| Prolyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228805661|gb|EEM52251.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 566

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|326566943|gb|EGE17081.1| prolyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 572

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 172/264 (65%), Gaps = 12/264 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D          +DF 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD----------SDFA 230

Query: 241 DIISLNSIV--EQWTAPYAATSDV 262
             I L   V  ++  AP  A +DV
Sbjct: 231 ANIELAEAVCYDKRAAPTQARTDV 254



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 107/183 (58%), Gaps = 8/183 (4%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+   V +  RGIEVGHIF  G KYS  ++ +  G +GK   + MG YG
Sbjct: 387 DIRNVVDGDPSPDGNGVISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPVTLMMGCYG 446

Query: 319 IGAMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE +HD  GIIW       DS+APF ++++ +K+ D       + +Y  L
Sbjct: 447 IGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAKAQSLYQTL 506

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG ++ +SL+
Sbjct: 507 KARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATGDQQMLSLD 566

Query: 433 EVI 435
           E++
Sbjct: 567 ELL 569


>gi|326559635|gb|EGE10049.1| prolyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326560025|gb|EGE10420.1| prolyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326562507|gb|EGE12824.1| prolyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326567687|gb|EGE17793.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC1]
 gi|326574268|gb|EGE24216.1| prolyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
 gi|326575054|gb|EGE24983.1| prolyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 572

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 172/264 (65%), Gaps = 12/264 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D          +DF 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD----------SDFA 230

Query: 241 DIISLNSIV--EQWTAPYAATSDV 262
             I L   V  ++  AP  A +DV
Sbjct: 231 ANIELAEAVCYDKRAAPTQARTDV 254



 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 8/183 (4%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K V +  RGIEVGHIF  G KYS  ++ +  G +GK   + MG YG
Sbjct: 387 DIRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPVTLMMGCYG 446

Query: 319 IGAMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE +HD  GIIW       DS+APF ++++ +K+ D       + +Y  L
Sbjct: 447 IGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAKAQSLYQTL 506

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG ++ +SL+
Sbjct: 507 KARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATGDQQMLSLD 566

Query: 433 EVI 435
           E++
Sbjct: 567 ELL 569


>gi|319779147|ref|YP_004130060.1| Prolyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317109171|gb|ADU91917.1| Prolyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 582

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 156/218 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKY +  L+E P +AE+ SHK MLR GMI +   GIY+++PLG K L  V AI+REE
Sbjct: 1   MLASKYHINTLKEAPAEAEVVSHKYMLRAGMIRKLGAGIYTYMPLGFKVLKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW+++ R+++YG E+LR  DR+ +  I  PT EEV+TDI  +
Sbjct: 61  MNRAGAIELLMPIVQPAELWMKTERWNAYGPELLRFKDRHSRDFIIQPTSEEVITDIVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S+R LP  FY IQ KFRDE RPRFG+MR REFLMKDAYSFD T E +  SY KM+ +
Sbjct: 121 EVHSWRQLPLNFYHIQTKFRDERRPRFGLMRGREFLMKDAYSFDRTEEEANISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+RIF RLGLK   + A++G IGG  SHEF V+A TGE
Sbjct: 181 YVRIFTRLGLKFRAVNADTGSIGGSRSHEFQVIAQTGE 218



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 96/160 (60%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F+ G KYS  + A +   +GK+  +QMG YGIG  R+VAA IE +HD  GII
Sbjct: 412 RGIEVGHVFFLGDKYSSKLRAVYLDENGKEAVIQMGCYGIGVSRIVAAAIEQNHDENGII 471

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP++I +  I  +  +  ++   ++Y +L   G DV  DD   + G  F   +L+
Sbjct: 472 WPLPMAPYEIVICPIGWSKSEEVKNKSLELYEQLKAEGYDVILDDRDLRTGVMFTEWELI 531

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P+++ VG + + D  +E++ R     + +SL EVINY 
Sbjct: 532 GVPIRITVGDRGLKDGVIEVQKRTEKEAKKLSLNEVINYV 571


>gi|311030092|ref|ZP_07708182.1| prolyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 561

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+L+LR G I Q++ GIYS+LPLG+K L  V  ++REE
Sbjct: 1   MKQSNMLIPTLREVPADAEVKSHQLLLRAGYIRQNTSGIYSFLPLGKKVLKKVEDVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA+E+ +P +Q+A+LW ESGR+ SYG E++RL DR+++    G THEEV+T + R 
Sbjct: 61  MENAGAVELLMPAMQAAELWKESGRWYSYGPELMRLNDRHNREFALGATHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ KFRDE RPRFG++R REFLMKDAYSF    E    +Y KMF +
Sbjct: 121 EVKSYKKLPLSLYQIQTKFRDEKRPRFGLLRGREFLMKDAYSFHANAESLDETYEKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL    + A+SG +GG  +HEF+VL+D GE  +  S +
Sbjct: 181 YSNIFTRLGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSTE 226



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVGHIF  GT+YS  M A F   +G++  + MG YGIG  RV+AA++E  HD  GI
Sbjct: 402 AKGIEVGHIFKLGTRYSEAMGANFLDENGRNQPMIMGCYGIGVSRVLAAIVEQYHDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +V PF + +I +   ++      E+IY+ L   G  V  DD  E+ G +FA ADL+
Sbjct: 462 VWPKAVTPFDVHVIPVNIKNEAQASLAEEIYSELKNSGLAVLMDDRQERPGVKFADADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P++V VG K   +  VE+K R TG  E++S+EE+I
Sbjct: 522 GLPVRVTVGKK-AEERIVEVKWRETGDMEELSVEELI 557


>gi|229129095|ref|ZP_04258068.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229146390|ref|ZP_04274761.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|296504314|ref|YP_003666014.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|228637023|gb|EEK93482.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228654332|gb|EEL10197.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|296325366|gb|ADH08294.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 566

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|206972654|ref|ZP_03233595.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206732411|gb|EDZ49592.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 566

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|289628621|ref|ZP_06461575.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651507|ref|ZP_06482850.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868600|gb|EGH03309.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 571

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 190/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +          + S+ +D+ 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDI----------VFSDGSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V +  A  AAT ++   +L D+   N +  A+ +E          + LP+  
Sbjct: 231 ANIEKAEAVPREKARPAATEEL---RLIDT--PNAKTIAQLVE---------GFDLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINY 437
           + +V+++
Sbjct: 558 VSDVLSF 564


>gi|326568855|gb|EGE18925.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 572

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 172/264 (65%), Gaps = 12/264 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D          +DF 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD----------SDFA 230

Query: 241 DIISLNSIV--EQWTAPYAATSDV 262
             I L   V  ++  AP  A +DV
Sbjct: 231 ANIELAEAVCYDKRAAPTQARTDV 254



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 108/183 (59%), Gaps = 8/183 (4%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K + +  RGIEVGHIF  G KYS  ++ +  G +GK   + MG YG
Sbjct: 387 DIRNVVDGDPSPDGKGIISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPVTLMMGCYG 446

Query: 319 IGAMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE +HD  GIIW       DS+APF ++++ +K+ D       + +Y  L
Sbjct: 447 IGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAKAQSLYQTL 506

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG ++ +SL+
Sbjct: 507 KARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATGDQQMLSLD 566

Query: 433 EVI 435
           E++
Sbjct: 567 ELL 569


>gi|169827162|ref|YP_001697320.1| prolyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
 gi|226701308|sp|B1HQZ9|SYP_LYSSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168991650|gb|ACA39190.1| Prolyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
          Length = 568

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 169/244 (69%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLSKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S D  D+   + N +  
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAYS-DTSDY---AANIEMA 236

Query: 241 DIIS 244
           ++I+
Sbjct: 237 EVIA 240



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GT YS  M+ TF    GK     MG YGIG  R++AAV E   D  G 
Sbjct: 403 AEGIEVGHIFKLGTTYSAKMNGTFLDEQGKSQPFIMGCYGIGVSRILAAVAEHFQDENGF 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +AP+ I ++ +   D+V     +++Y  L     DV  DD  E+ G +FA ADL+
Sbjct: 463 TWPTQLAPYDIHVVPVNTKDEVQVALADELYGLLKSYRYDVLLDDRAERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P++V VG K  ++  VE+K R TG   +   EEVI+  +  F  N
Sbjct: 523 GLPVRVTVGKK-ATEGIVEVKFRQTGETFEWKKEEVIDRLNEFFRKN 568


>gi|228986962|ref|ZP_04147088.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772740|gb|EEM21180.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 566

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDESGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|160900913|ref|YP_001566495.1| prolyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|226699138|sp|A9BP65|SYP_DELAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160366497|gb|ABX38110.1| prolyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 581

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/229 (51%), Positives = 164/229 (71%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A++W E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEMWEETGRFEKMGPELLRIKDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDTAQISYQTMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC-SKDF 227
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE   V+C S D+
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYCPSSDY 229



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+     A  RGIEVGH+FY GTKYS  M+ATF   +GK    +MG 
Sbjct: 393 VADLRNVVAGDKSPDGAGELAIERGIEVGHVFYLGTKYSQAMNATFLAENGKPSLFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  ++A EK++A L  +
Sbjct: 453 YGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVVCPIGMDRSEPVKEAAEKLHAELLAL 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + +VE +HR       M+  +V+
Sbjct: 513 GVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGLKEGQVEYQHRRDTEATKMAAADVL 572

Query: 436 NYASHRFS 443
            +   R  
Sbjct: 573 GHLKQRLG 580


>gi|326572669|gb|EGE22658.1| prolyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 572

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 172/264 (65%), Gaps = 12/264 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D          +DF 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD----------SDFA 230

Query: 241 DIISLNSIV--EQWTAPYAATSDV 262
             I L   V  ++  AP  A +DV
Sbjct: 231 ANIELAEAVCYDKRAAPTQARTDV 254



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 107/183 (58%), Gaps = 8/183 (4%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D  N    D  P+ K V +  RGIEVGHIF  G KYS  ++ +  G +GK   + MG YG
Sbjct: 387 DTRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPVTLMMGCYG 446

Query: 319 IGAMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE +HD  GIIW       DS+APF ++++ +K+ D       + +Y  L
Sbjct: 447 IGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAKAQSLYQTL 506

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG ++ +SL+
Sbjct: 507 KARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATGDQQMLSLD 566

Query: 433 EVI 435
           E++
Sbjct: 567 ELL 569


>gi|229157395|ref|ZP_04285473.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228626122|gb|EEK82871.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 566

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 98/162 (60%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDESGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R T   E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATAESEEVKVEELQTYIAN 563


>gi|228935133|ref|ZP_04097960.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824498|gb|EEM70303.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 566

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNYRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|169344114|ref|ZP_02865097.1| prolyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169297725|gb|EDS79824.1| prolyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 570

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 121/225 (53%), Positives = 156/225 (69%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E   P L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLAPALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFC+
Sbjct: 181 YVNIFNRCGLDAKTVAADSGAIGGSGSAEFMVKSEVGEDDVVFCT 225



 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 109/188 (57%), Gaps = 7/188 (3%)

Query: 259 TSDVHNEKLFDSLPE-NKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D  N  + +  PE  K ++ +RG EVGHIF  GTKYS  M ATF   DGK     MG 
Sbjct: 379 VGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDGKAKPFIMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSK 374
           YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I  N+K  +Q  +   E+IY  L K
Sbjct: 439 YGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATK--AEEIYNELRK 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E +S+EEV
Sbjct: 497 MGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVETLSIEEV 555

Query: 435 INYASHRF 442
            N     F
Sbjct: 556 YNRVREEF 563


>gi|126654116|ref|ZP_01725934.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126589396|gb|EAZ83546.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 568

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 169/244 (69%), Gaps = 4/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLSKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S D  D+   + N +  
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAYS-DTSDY---AANIEMA 236

Query: 241 DIIS 244
           ++I+
Sbjct: 237 EVIA 240



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GT YS  M+ TF    GK     MG YGIG  R++AAV E   D  G 
Sbjct: 403 AEGIEVGHIFKLGTTYSAKMNGTFLDEQGKSQPFIMGCYGIGVSRILAAVAEHFQDENGF 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +AP+ I ++ +   D+      +++Y  L     DV  DD  E+ G +FA ADL+
Sbjct: 463 TWPTQLAPYDIHVVPVNTKDEAQVALADELYGLLKSYRYDVLLDDRAERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P++V VG K + +  VE+K R TG   +   EEVI++ +  F  N
Sbjct: 523 GLPVRVTVGKKAI-EGIVEVKFRQTGETFEWKKEEVIDHLNEFFRKN 568


>gi|42782910|ref|NP_980157.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|217961239|ref|YP_002339807.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229140460|ref|ZP_04269015.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|81409464|sp|Q732Q0|SYP1_BACC1 RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|226731429|sp|B7HLF2|SYP_BACC7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42738837|gb|AAS42765.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|217063356|gb|ACJ77606.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228643021|gb|EEK99297.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|324327716|gb|ADY22976.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 566

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|237738009|ref|ZP_04568490.1| prolyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229419889|gb|EEO34936.1| prolyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 569

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKL+LR GMI + + G+Y++LPLG KAL  V  I+R E
Sbjct: 1   MRFSKSYIKTLKETPKEAEIASHKLLLRAGMIKKLTSGVYTYLPLGLKALKKVENIVRRE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A+LW ESGR++  G  M++L DR  +  + GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEIFMPVLQPAELWKESGRWEVMGPLMMKLQDRAKRDFVLGPTHEEVVTDVIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     ++ M  +
Sbjct: 121 DVASYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHATRESLDEEFDNMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF   GLK  P+ A+SG IGG  S EF VLAD+GE + ++C
Sbjct: 181 YKRIFSSCGLKFRPVEADSGAIGGSGSKEFHVLADSGEDEIIYC 224



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 99/160 (61%), Gaps = 5/160 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVGHIF  GTKYS  + ATF    G  H + MG YGIG  R +A+ IE ++D  G
Sbjct: 403 SARGIEVGHIFKLGTKYSEKLEATFIDEKGVTHPIIMGCYGIGVSRTLASAIEQNNDEFG 462

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           I+WP ++AP+ + +I  N+K  +QV     E++Y  L   G D   DD  E+ G +F  A
Sbjct: 463 IVWPSAIAPYVVDVIPANMKDAEQVA--LAEELYNSLLDEGIDTILDDRDERPGFKFKDA 520

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DL+GFP +VI G K  ++  VE+K R TG   ++S +EVI
Sbjct: 521 DLIGFPFKVICGKK-AAEGIVELKIRKTGETFEISKDEVI 559


>gi|229197929|ref|ZP_04324645.1| Prolyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228585647|gb|EEK43749.1| Prolyl-tRNA synthetase [Bacillus cereus m1293]
          Length = 566

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|297539468|ref|YP_003675237.1| prolyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258815|gb|ADI30660.1| prolyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 573

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 158/218 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P DAE+ SH LM+R G+I +   G+YSW+PLG + L  V  I+R+E
Sbjct: 1   MRASQFFFNTQKEAPNDAELPSHILMVRAGLIKRLGSGLYSWMPLGLRVLRKVETIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+ +   +GPTHEEV+TDI RS
Sbjct: 61  MNKAGALELLMPAVQPRELWDETGRWAVFGPQMLKITDRHSREFCFGPTHEEVITDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHTDFASLETTYANMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  +F+RLGLK   ++A++G IGGD SHEF VLAD+GE
Sbjct: 181 YSNVFNRLGLKFRAVKADTGAIGGDGSHEFHVLADSGE 218



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K + +  RGIEVGHIF   TKYS  M+AT+     +   ++MG 
Sbjct: 386 VADIRNVVEGDASPDGKGILSLCRGIEVGHIFQLRTKYSEAMNATYLDEASQTQVMEMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE  +D +GII+P S+APF +++  I     +    A  KIYA L+  
Sbjct: 446 YGIGVSRIVGAAIEQGNDARGIIFPKSMAPFTVTICPIGYDKSEAVSAAANKIYADLNAA 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   DD GE+ G  FA ADL+G P ++++G + ++D  VE K R     + ++L+ V+
Sbjct: 506 GIEALLDDRGERPGVMFAEADLMGIPHRLVIGERGLADGTVEYKGRTDAEAQMVALKNVV 565

Query: 436 NY 437
            +
Sbjct: 566 EF 567


>gi|222097264|ref|YP_002531321.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
 gi|254782885|sp|B9IVA8|SYP_BACCQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221241322|gb|ACM14032.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
          Length = 566

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|229180095|ref|ZP_04307439.1| Prolyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228603304|gb|EEK60781.1| Prolyl-tRNA synthetase [Bacillus cereus 172560W]
          Length = 566

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTI 221



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|237800208|ref|ZP_04588669.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023065|gb|EGI03122.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 571

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSNIFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFS 224



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETDAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +V+V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRVVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINYASHR 441
           + +V+++   R
Sbjct: 558 VADVLSFIQGR 568


>gi|30263823|ref|NP_846200.1| prolyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47529247|ref|YP_020596.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186669|ref|YP_029921.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|65321146|ref|ZP_00394105.1| COG0442: Prolyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|118479041|ref|YP_896192.1| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|165872601|ref|ZP_02217232.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167635829|ref|ZP_02394138.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639857|ref|ZP_02398126.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170687854|ref|ZP_02879068.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170706810|ref|ZP_02897268.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177652150|ref|ZP_02934696.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190568409|ref|ZP_03021316.1| prolyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196042144|ref|ZP_03109427.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196044700|ref|ZP_03111935.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218904947|ref|YP_002452781.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225865800|ref|YP_002751178.1| prolyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227813273|ref|YP_002813282.1| prolyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228916456|ref|ZP_04080022.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928867|ref|ZP_04091899.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947538|ref|ZP_04109828.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229092859|ref|ZP_04223993.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229123332|ref|ZP_04252536.1| Prolyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229186058|ref|ZP_04313228.1| Prolyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229602364|ref|YP_002868057.1| proline--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254683474|ref|ZP_05147334.1| prolyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254721995|ref|ZP_05183784.1| prolyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254735857|ref|ZP_05193563.1| prolyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739617|ref|ZP_05197311.1| prolyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254756010|ref|ZP_05208041.1| prolyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254759329|ref|ZP_05211354.1| prolyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|81583682|sp|Q81WL6|SYP1_BACAN RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|152074739|sp|A0RHJ2|SYP1_BACAH RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|226731426|sp|B7JJ97|SYP_BACC0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782882|sp|C3P5M1|SYP_BACAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782883|sp|C3L7A8|SYP_BACAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782884|sp|C1EP43|SYP_BACC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30258467|gb|AAP27686.1| proline--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47504395|gb|AAT33071.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180596|gb|AAT55972.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|118418266|gb|ABK86685.1| proline--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|164711633|gb|EDR17179.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512258|gb|EDR87635.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167528786|gb|EDR91544.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128228|gb|EDS97097.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170668170|gb|EDT18919.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172082519|gb|EDT67584.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190560413|gb|EDV14391.1| prolyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196024735|gb|EDX63407.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196026996|gb|EDX65620.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218535709|gb|ACK88107.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225789269|gb|ACO29486.1| proline--tRNA ligase [Bacillus cereus 03BB102]
 gi|227007610|gb|ACP17353.1| proline--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228597477|gb|EEK55127.1| Prolyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228660108|gb|EEL15744.1| Prolyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228690481|gb|EEL44264.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228812058|gb|EEM58389.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830674|gb|EEM76279.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843035|gb|EEM88117.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266772|gb|ACQ48409.1| proline--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|196036918|ref|ZP_03104302.1| prolyl-tRNA synthetase [Bacillus cereus W]
 gi|195990473|gb|EDX54457.1| prolyl-tRNA synthetase [Bacillus cereus W]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|121603656|ref|YP_980985.1| prolyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|152112939|sp|A1VK86|SYP_POLNA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120592625|gb|ABM36064.1| prolyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 581

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHQLMMRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIEMS+P +Q A+LW E+GR+++ G E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAIEMSMPVIQPAELWQETGRFEAMGPELLRIKDRHGRDFVVQPTSEEVVTDVMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 DIRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQTAAKVSYQNMAEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 3/165 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K + A  RGIEVGH+FY GTKYS  M+ATF G +GK  +++MG Y
Sbjct: 394 ADIRNVVAGDPSPDGKGLLAIERGIEVGHVFYLGTKYSRAMNATFLGENGKPQFLEMGCY 453

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVG 376
           GIG  R+ AA IE +HD +GIIWPD++APF + +  I        + A +K+Y+ L   G
Sbjct: 454 GIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPITPERFPDVKAAADKLYSELLGAG 513

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            DV  DD GE+ G+ FA  +L+G P +V +G + + +  +E +HR
Sbjct: 514 VDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKEGHIEYQHR 558


>gi|229117305|ref|ZP_04246683.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228666205|gb|EEL21669.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-3]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTI 221



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  + IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGKNIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|30021908|ref|NP_833539.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|81433856|sp|Q819Y4|SYP1_BACCR RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|29897464|gb|AAP10740.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|299534746|ref|ZP_07048076.1| prolyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
 gi|298729834|gb|EFI70379.1| prolyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
          Length = 568

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 126/277 (45%), Positives = 178/277 (64%), Gaps = 14/277 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLTKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y  M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYEDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +            S+ +D+ 
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAY----------SDTSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             I +  ++  +     A  DV  EK+  + PE K +
Sbjct: 231 ANIEMAEVIVDYQPSDEALKDV--EKV--ATPEQKTI 263



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 91/167 (54%), Gaps = 1/167 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GT YS  M+ TF    GK     MG YGIG  R++AAV E   D  G 
Sbjct: 403 AEGIEVGHIFKLGTTYSAKMNGTFLDEQGKAQPFIMGCYGIGVSRILAAVAEHFQDDNGF 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +AP+ I ++ +   D+      E++Y  L     DV  DD  E+ G +FA ADL+
Sbjct: 463 TWPTQLAPYDIHVVPVNTKDEAQVALAEELYGLLKSYRYDVLLDDRPERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P++V VG K  ++  VE+K R TG   +   EEVI+  +  F  N
Sbjct: 523 GLPVRVTVGKK-ATEGIVEVKFRQTGETFEWKKEEVIDRLNEFFRKN 568


>gi|49481697|ref|YP_037880.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|81395110|sp|Q6HEZ6|SYP1_BACHK RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|49333253|gb|AAT63899.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|52141669|ref|YP_085160.1| prolyl-tRNA synthetase [Bacillus cereus E33L]
 gi|81686584|sp|Q636K7|SYP1_BACCZ RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|51975138|gb|AAU16688.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEIKVEELQTYIAN 563


>gi|301055309|ref|YP_003793520.1| prolyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300377478|gb|ADK06382.1| prolyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|224476386|ref|YP_002633992.1| prolyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420993|emb|CAL27807.1| putative prolyl-tRNA synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P ++E P +AE  SH+L+L+ G+I Q + G+YS+LPL  + L+ + AI+REE
Sbjct: 1   MRQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGVYSYLPLATRVLNKITAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQPSELWEESGRWDAYGSELMRLTDRNGRQFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +YN+M+ +
Sbjct: 121 EVKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDETYNQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++
Sbjct: 181 YSRIFKRAGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSEN 226



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 2/165 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E + D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSETMNATFLDNQGKAKPLIMGCYGIGVSRTLSAIVEQNSDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI I       R+  ++IYA L +   +V +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLITINPKKDDQRELGDQIYAELQQ-SYEVLYDDRKERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P++++VG K   +  VE+K R  G  E++ +  + +Y  + ++
Sbjct: 521 GLPIRIVVG-KRADEGIVEVKRRDNGESEEVEVSNLASYIDNLYT 564


>gi|229104381|ref|ZP_04235050.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228679079|gb|EEL33287.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTI 221



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|323701857|ref|ZP_08113527.1| prolyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323533161|gb|EGB23030.1| prolyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 568

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SH+L+LR G I + + GIY++LPL Q+ L  +  I+REE
Sbjct: 1   MRTSQMLMPTLREVPAEAEVVSHQLLLRAGFIRKSASGIYTYLPLAQRVLKKIKEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +P +Q A++W+ESGR+  YG E+ RL DR+++    GPTHEEV+T + R 
Sbjct: 61  MDKQGGQELLMPIVQPAEMWLESGRWHVYGPELFRLKDRHNRDFCLGPTHEEVITILVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P   YQIQ KFRDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EVRSYKQMPLLLYQIQNKFRDERRPRFGLMRGREFIMKDLYSFDRDEAGLDISYQKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y  +F+R GLK  P+ A+SG IGG  +HEF+VLAD+GE  + FCS+
Sbjct: 181 YTNVFNRCGLKFRPVEADSGAIGGSDTHEFMVLADSGEAAILFCSQ 226



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 102/157 (64%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIEVG IF  GTKYS  + ATF   +GK+  + MG YGIG  R +AA IE +HD  G
Sbjct: 401 QARGIEVGQIFKLGTKYSKALGATFLDENGKEKPIVMGCYGIGVSRTMAAAIEQNHDQDG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+   +I + A D+      E +Y +L+++G +   DD  E+ G +F  ADL
Sbjct: 461 IIWPASIAPYHAIVIPVSAKDEKQMQLAESLYNKLNQIGVETVLDDRAERPGVKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G+PL+++VG+K ++D  VE++ R +G  + + L+++
Sbjct: 521 IGYPLRIVVGNKAMTDGLVEVRQRKSGQTDLIPLDQI 557


>gi|240013893|ref|ZP_04720806.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240016334|ref|ZP_04722874.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
 gi|240121462|ref|ZP_04734424.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
 gi|260440251|ref|ZP_05794067.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 570

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 268



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A ++IYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADRIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIV 561


>gi|83589892|ref|YP_429901.1| prolyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|114152213|sp|Q2RJN1|SYP_MOOTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83572806|gb|ABC19358.1| prolyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 573

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 157/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AEI SH+L+LR G I + + GIY++LPLG++ L  +  IIREE
Sbjct: 1   MRASELLAPTLRETPAEAEIVSHQLLLRGGFIRKAAAGIYTYLPLGRRVLAKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR++ YG+EM RL DR+ +    GPTHEE++T + RS
Sbjct: 61  MDRAGGQEVVLPIIQPAELWQESGRWEVYGEEMFRLQDRHRRQFCLGPTHEEIITALVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFDL  EG   SY KM+ +
Sbjct: 121 EVTSYKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDLDQEGLNQSYRKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSK 225
           Y  +F R GL   P++A+SG IGG+ SHEF+ LA  GE   V+C +
Sbjct: 181 YSNVFRRCGLDFRPVQADSGAIGGNYSHEFMALATAGEALLVYCRE 226



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 91/144 (63%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIEVG +F  GTKYS  + A +  A G++H + MG YGIG  R +AA++E  HD +G
Sbjct: 401 QARGIEVGQVFQLGTKYSGALGANYTDARGQEHPIVMGCYGIGVSRTMAAIVEQCHDDQG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAP+++ +I     D   R   E +Y  L+  G +V +DD  E+ G +F  ADL
Sbjct: 461 IIWPLSVAPYQVVIIPASLKDDGQRQVAEGLYRELAAAGVEVVYDDRDERAGLKFVEADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           +G+PL++ VG + ++   V++K R
Sbjct: 521 IGYPLRITVGKRTITSGTVDVKWR 544


>gi|229098288|ref|ZP_04229235.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228685186|gb|EEL39117.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 566

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTI 221



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|294788637|ref|ZP_06753879.1| proline--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483514|gb|EFG31199.1| proline--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 571

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/231 (51%), Positives = 159/231 (68%), Gaps = 2/231 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEATLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +QSADLW ESGR+  YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRVGCVELLMPVIQSADLWKESGRWQFYGDELLRITDRHDNEFCFSPTCEEMITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG-SKHSYNKMFV 179
            I SY+ LP  FY I  KFRDE RPRFGVMR+REF+MKDAYSF    E   +  Y  M+ 
Sbjct: 121 EINSYKQLPKNFYHINTKFRDERRPRFGVMRAREFVMKDAYSFHADFESLVRDGYQPMYD 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +Y RIF+RLGL   P+ A++G IGG  SHEF VLAD+GE  V    D  D+
Sbjct: 181 AYCRIFNRLGLNFRPVAADTGSIGGTGSHEFQVLADSGE-DVIAYSDSSDY 230



 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F   TKYS  M+ATF   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 405 ARGIEVGHVFQLRTKYSEAMNATFLDNNGKSQIMEMGCYGIGVTRVVAAAIEQNNDEKGI 464

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW D++APF + ++  N K    V + A +KI+A L   G DV  DD  E+ G   A ++
Sbjct: 465 IWTDAMAPFTVVIVPMNYKKSADV-KAAADKIHAELLAQGVDVLLDDRDERAGVLLADSE 523

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R  G  + +++ E++
Sbjct: 524 LLGIPHRIVIGDRALKEGNVEYAERKVGESQSIAVNEIV 562


>gi|47222174|emb|CAG11600.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 483

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 226/425 (53%), Gaps = 36/425 (8%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           S +LM + G+IH  + G Y +LP   ++++ +  +I +E    G  ++ +P+L SA+LW 
Sbjct: 77  SQRLMQQAGLIHPSNPGCYYYLPATVRSVEKLIRVIDQEMQEIGGQKLDMPSLCSAELWK 136

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFR 140
            S R+D  GKE+LRL DR+       PTHEE +T +       SY+ LP   YQI  KFR
Sbjct: 137 ASERWDLMGKELLRLKDRHGGDYCLAPTHEEAVTTLVAHQTSLSYKQLPLLLYQITRKFR 196

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE +PRFG++R REF MKD YSFD++ E +  +Y  +  +Y R+F RLGL  + ++A++G
Sbjct: 197 DEPKPRFGLLRGREFYMKDMYSFDVSEEAAYQTYESVCQAYTRLFARLGLHCVQVQADTG 256

Query: 201 PIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            IGG LSHEF + AD GE + + C        I + ++D  D             P   T
Sbjct: 257 NIGGKLSHEFQLPADIGEDRLLLCGNCSFAANIETVSSDRTD------------CPQCRT 304

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             +              V ++GIEVGH FY G KYS   +ATF  A  K    +MG +G+
Sbjct: 305 GTL--------------VESKGIEVGHTFYLGKKYSSVFNATFSNAQNKLAEAEMGCFGL 350

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV------CRDACEKIYARLS 373
           G  R++AA IE     +GI WP  +AP+++ ++  K   +V        +  + +   L 
Sbjct: 351 GVTRILAAAIEVMSTEEGIRWPGLLAPYQVCVVPPKKGSKVDKATIIAEELVQTLTVTLP 410

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSL 431
           ++  +V  DD  +  IG +   A  LG+P  V+VG   + + S+ E+  + TG    +S 
Sbjct: 411 RLRGEVVLDDRTQMTIGRRLKDASKLGYPYVVVVGQGALEEPSRFEVICQQTGATMFLSQ 470

Query: 432 EEVIN 436
           E +++
Sbjct: 471 EGLLD 475


>gi|239999200|ref|ZP_04719124.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240080454|ref|ZP_04724997.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|240113176|ref|ZP_04727666.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240115935|ref|ZP_04729997.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|240118232|ref|ZP_04732294.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|240123781|ref|ZP_04736737.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|240125970|ref|ZP_04738856.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|240128484|ref|ZP_04741145.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493969|ref|ZP_05107140.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268603943|ref|ZP_06138110.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268682406|ref|ZP_06149268.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268684564|ref|ZP_06151426.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|226513009|gb|EEH62354.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268588074|gb|EEZ52750.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268622690|gb|EEZ55090.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268624848|gb|EEZ57248.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 570

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 268



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A ++IYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADRIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIV 561


>gi|229162755|ref|ZP_04290712.1| Prolyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228620637|gb|EEK77506.1| Prolyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 566

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTI 221



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 100/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDESGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY+ L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGESIYSSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|251797797|ref|YP_003012528.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545423|gb|ACT02442.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 571

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 118/222 (53%), Positives = 156/222 (70%), Gaps = 1/222 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  LP L+E P +AE  SH+LMLR G+I Q + GIY++LP G+  L  +  IIREE
Sbjct: 1   MRQSQLLLPTLREAPSEAEAVSHQLMLRAGLIRQLAAGIYTYLPAGRLVLRKLEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q ADLW +SGRY+ YG E++RL DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDNAGCQEVFMPAMQPADLWRQSGRYEKYGPELVRLKDRHDREFALGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPR+G++R REF+MKDAYSFD   EG   SY +M+ +
Sbjct: 121 EVNSYRQLPVTLYQIQTKFRDEKRPRYGLLRGREFMMKDAYSFDADWEGLNESYQRMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQV 221
           Y RIF R GL   P+ A++G IGG+  +HEF+ LAD GE  +
Sbjct: 181 YHRIFSRCGLHFRPVEADAGTIGGEGGTHEFMALADIGEDTI 222



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 4/191 (2%)

Query: 257 AATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A   DV N  L D  P   E K    RGIEVG +F  GTKYS  M A +  A G +  + 
Sbjct: 382 ARLRDVRNAVLGDGCPNCAEGKLRMFRGIEVGQVFKLGTKYSEVMQANYLDATGSEKPII 441

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  RV++AV+E  HD +GI WP  +AP+++ ++ + A D    D   K+Y  L 
Sbjct: 442 MGCYGIGISRVMSAVVEQHHDEQGIRWPLELAPYQVHVVPVSAKDGQQMDVAGKLYRELM 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V  DD  E+ G +F  +DL+G P++++VG +  +D  VE+K+R  G     + EE
Sbjct: 502 SAGFEVLLDDRDERPGVKFKDSDLIGIPVRIVVGRQ-AADGVVELKYRNEGEVLQATTEE 560

Query: 434 VINYASHRFSN 444
            +   +  F +
Sbjct: 561 ALGLVTGYFRS 571


>gi|269797927|ref|YP_003311827.1| prolyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094556|gb|ACZ24547.1| prolyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 572

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG K++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWKSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDIDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE   V+C+K
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTK 226



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 90/146 (61%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG  R +AA IE  HD  GI
Sbjct: 406 AKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIGVSRTLAAAIEQYHDENGI 465

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+APF+  ++ I A D+      + IY  L   G DV  DD  ++ G +F  ADL+
Sbjct: 466 IWPRSIAPFEAVIVPINAKDEALMATSQTIYTALQNAGVDVLLDDRKDRAGVKFKDADLI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G+PL++ V    + +++VEI+ R +G
Sbjct: 526 GYPLRITVSKNTLENNEVEIQIRKSG 551


>gi|229031449|ref|ZP_04187449.1| Prolyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228729738|gb|EEL80718.1| Prolyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 566

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYS 224



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|269214916|ref|ZP_05987412.2| proline--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269208774|gb|EEZ75229.1| proline--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 625

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/273 (46%), Positives = 175/273 (64%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 56  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 115

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR+  YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 116 MARAGSVELLMPVVQPAELWQESGRWKFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 175

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 176 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 235

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 236 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 291

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A  A    VH  N K  DSL
Sbjct: 292 PTLPLKG---ERAAAQAELVKVHTPNVKTIDSL 321



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 459 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 518

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 519 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 577

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 578 LLGIPHRIVIGDRALKEGNVEYAERRENEAQAVAIGEIV 616


>gi|325204335|gb|ADY99788.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 570

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ Y KE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYXKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 268



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIV 561


>gi|268596592|ref|ZP_06130759.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268601604|ref|ZP_06135771.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268550380|gb|EEZ45399.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268585735|gb|EEZ50411.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
          Length = 580

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 11  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 71  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 131 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 191 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 246

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 247 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 278



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 414 ARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 473

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A ++IYA L   G DV  DD  E+ G     ++
Sbjct: 474 IWTKAMAPFEVVIVPMNYKKSDTV-REAADRIYAELLAAGADVLLDDRDERAGVLLNDSE 532

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 533 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIV 571


>gi|121593268|ref|YP_985164.1| prolyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|222109990|ref|YP_002552254.1| prolyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|152074743|sp|A1W4B3|SYP_ACISJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782898|sp|B9ME00|SYP_DIAST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120605348|gb|ABM41088.1| prolyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|221729434|gb|ACM32254.1| prolyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 581

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SH+LM+R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHQLMMRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFDKMGPELLRIHDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   A  RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG 
Sbjct: 393 VADLRNVVAGDLSPDGQGELAIERGIEVGHVFYLGTKYSKAMNATFLGEDGKPAFFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  +     +  +   E +YA L   
Sbjct: 453 YGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVICPVGMDRSEAVKAQAESLYADLLAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V +G K + + +VE +HR       + + +++
Sbjct: 513 GVDVILDDRGERPGAMFADWELIGVPHRVTIGDKSLKEGQVEYQHRRDASATKVGVADIL 572

Query: 436 NYASHRFS 443
            +   R +
Sbjct: 573 AHVKERLA 580


>gi|194098918|ref|YP_002001983.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|291043544|ref|ZP_06569260.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398861|ref|ZP_06643026.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|193934208|gb|ACF30032.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|291012007|gb|EFE03996.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610275|gb|EFF39385.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 599

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 297



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A ++IYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTV-REAADRIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIV 590


>gi|317164487|gb|ADV08028.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 599

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 265

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 266 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 297



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A ++IYA L   G DV  DD  E+ G     ++
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTV-REAADRIYAELLAAGADVLLDDRDERAGVLLNDSE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 552 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIV 590


>gi|91786735|ref|YP_547687.1| prolyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123356060|sp|Q12FA3|SYP_POLSJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91695960|gb|ABE42789.1| prolyl-tRNA synthetase [Polaromonas sp. JS666]
          Length = 580

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 156/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R GMI +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHQLMMRAGMIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM++P +Q A+ W E+GR++  G E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAVEMTMPVIQPAEFWQETGRFEKMGPELLRIKDRHGRDFVVQPTSEEVITDVMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF MKDAYSFD     +K SY  M  +
Sbjct: 121 DIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDQASAKASYQIMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 5/167 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    +  P+ K V A  RGIEVGH+FY GTKYS  M+ATF   +GK  +++MG 
Sbjct: 392 VADLRNVVAGNPSPDGKGVLAIERGIEVGHVFYLGTKYSQAMNATFLDENGKPQFLEMGC 451

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC--RDACEKIYARLSK 374
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I + D+    + A +K+Y  L  
Sbjct: 452 YGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPI-SPDRFADVKAAADKLYGELLA 510

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G DV  DD GE+ G+ FA  +L+G P +V +G + + + ++E +HR
Sbjct: 511 AGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKEGQLEYQHR 557


>gi|268595028|ref|ZP_06129195.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599257|ref|ZP_06133424.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268686874|ref|ZP_06153736.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268548417|gb|EEZ43835.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583388|gb|EEZ48064.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268627158|gb|EEZ59558.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 580

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 11  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 71  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 131 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 191 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 246

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 247 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 278



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 414 ARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 473

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A ++IYA L   G DV  DD  E+ G     ++
Sbjct: 474 IWTKAMAPFEVVIVPMNYKKSDTV-REAADRIYAELLAAGADVLLDDRDERAGVLLNDSE 532

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 533 LLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIV 571


>gi|312898748|ref|ZP_07758137.1| prolyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620179|gb|EFQ03750.1| prolyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 574

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 164/226 (72%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+++P +A++ASHKLML+ GM+ +++ G+YS+LPLG+K    V  IIR+E
Sbjct: 1   MLASKLYAPTLRDDPAEADVASHKLMLKAGMLRKNAAGLYSFLPLGRKVCLKVENIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA E+ +P +Q A++W E+GR+D YG EM +L DR+D     GPTHEE++T + R+
Sbjct: 61  MNRSGAQEVMMPIVQPAEIWRETGRWDVYGPEMFKLKDRHDNEYCLGPTHEELITTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   +Q+Q K+RDE+RPRFG+MRSREF+MKDAYSFD+  EG   SY  M+ +
Sbjct: 121 ELRSYKQLPVNLWQMQNKYRDEIRPRFGLMRSREFVMKDAYSFDVDREGMIKSYESMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF   G++  P+ A+SG IGG+ SHEF+ LA  GE   V C+K
Sbjct: 181 YSRIFTECGIEYRPVLADSGQIGGNYSHEFMALAKAGEADVVICTK 226



 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG +F  GTKYS  ++ATF   DGK     MG YGIG  R VAA IE  HD KGII
Sbjct: 405 QGIEVGQVFGLGTKYSESLNATFLDKDGKAKPFVMGCYGIGVTRTVAATIEQLHDDKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP + APF+  ++ +   D+      +K+Y  L  +  DV  DD  E+ G +F  ADL+G
Sbjct: 465 WPVATAPFEAVVLPVNMKDEAIVSVAKKLYDELLDLDVDVLLDDRDERAGVKFNDADLIG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +P+++ VGSK  +D KVE+K R T   E++++E    + +    + R
Sbjct: 525 YPVRLTVGSK-AADGKVEVKIRRTDEEEEVTIEGAAEHVARLLRDLR 570


>gi|330877991|gb|EGH12140.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 412

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 189/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +            S+ +D+ 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF----------SDGSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V +  A  AAT ++   +L D+   N +  A+ +E          + LP+  
Sbjct: 231 ANIEKAEAVPREKARPAATEEL---RLIDT--PNAKTIAQLVE---------GFDLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279


>gi|62078861|ref|NP_001014086.1| probable prolyl-tRNA synthetase, mitochondrial precursor [Rattus
           norvegicus]
 gi|73919763|sp|Q5M7W7|SYPM_RAT RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|56789529|gb|AAH88403.1| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Rattus
           norvegicus]
 gi|149035787|gb|EDL90468.1| rCG50302 [Rattus norvegicus]
          Length = 475

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 218/412 (52%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    D    S +LML+ G+I   S G Y  +P   +A++ +  +I +E    G  +++
Sbjct: 59  LEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKIN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  +GR+D  G+E+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWRATGRWDLMGRELLRLKDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ +Y+ +  +Y R+F RLG
Sbjct: 179 LLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQETYSLVCDAYCRLFDRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ +  RA+ G IGG +SHEF +  D GE + V C          S NT+  D+     I
Sbjct: 239 LRWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHF-----SANTEIVDLS--QKI 291

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                 P   T                    +GIEVGH FY GTKYS   +A F  A G+
Sbjct: 292 CPDCQGPLTET--------------------KGIEVGHTFYLGTKYSSIFNAHFTNAHGE 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       I WP  +AP+++ +I  K  + +    +  E
Sbjct: 332 SLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPSLLAPYQVCIIPPKKGSKEAAATEIVE 391

Query: 367 KIY----ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           ++Y      L ++  +V  DD     IG++   A+ LG+P  +I   + + D
Sbjct: 392 RLYDDVTEALPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIASKRALED 443


>gi|294668560|ref|ZP_06733657.1| proline--tRNA ligase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309523|gb|EFE50766.1| proline--tRNA ligase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 569

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/273 (47%), Positives = 180/273 (65%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL L+  P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLDLEFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L    E+ TA  A  + VH  N K  DSL
Sbjct: 237 PTLPLKG--ERATA-QAELAKVHTPNVKTIDSL 266



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 3/144 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGII
Sbjct: 405 RGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGII 464

Query: 340 WPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           W  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 465 WTKAMAPFEVVIVPMNYKKSDAV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           LG P ++++G + + +  VE   R
Sbjct: 524 LGIPHRIVIGDRALKEGNVEYAER 547


>gi|229918663|ref|YP_002887309.1| prolyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|229470092|gb|ACQ71864.1| prolyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 569

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/221 (52%), Positives = 152/221 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE  SH+L++R G I Q++ GIYS+LPLG K L N+  IIREE
Sbjct: 4   MKQSRLLMPTLREVPADAEAVSHQLLVRGGFIRQNAAGIYSYLPLGHKVLHNIQTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW E+GR+  YG E++RL DR+D+    G THEE++T I R 
Sbjct: 64  MNRAGAQELLMPAIQPAELWEETGRWGIYGPELMRLTDRHDRRFALGATHEELITSIVRD 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REFLMKDAYSF  T E     Y  M+ +
Sbjct: 124 ELNSYKKLPMNLYQIQTKYRDERRPRFGLLRGREFLMKDAYSFHATQEDLDEEYTNMYNA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GLK  P+ A+SG IGG  +HEF  LAD GE  +
Sbjct: 184 YSRIFDRTGLKYRPVVADSGAIGGKDTHEFQALADIGEDTI 224



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 102/165 (61%), Gaps = 2/165 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG +F  GT+YS  M ATF   +G+   + MG YGIG  R ++A++E  HD +GI
Sbjct: 404 ARGIEVGQVFKLGTRYSEAMGATFLNEEGRAEPLIMGCYGIGVSRTLSAIVEQHHDDRGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + LI I A D+   +   ++Y  L +   DV +DD  E+ G +FA ADL+
Sbjct: 464 VWPRNVAPFDLHLIAINAKDETQVELANRLYEELGQT-YDVLFDDRKERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P++V VG K   +  VE+K R TG   + S++E+    + +FS
Sbjct: 523 GLPIRVNVGKK-AGEGIVEVKVRATGEVIETSIDELKEVIASKFS 566


>gi|76613805|ref|XP_585755.2| PREDICTED: hypothetical protein [Bos taurus]
 gi|297473149|ref|XP_002686423.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296489106|gb|DAA31219.1| hypothetical protein BOS_3571 [Bos taurus]
          Length = 475

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 36/406 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    S +LML+ G+IH  S G Y  LP   +A++ +  +I +E    G  ++++P+L  
Sbjct: 65  DLTCKSQRLMLQMGLIHPASPGCYHLLPYTVRAMEKLVRVIDQEMQTIGGQKVNMPSLSP 124

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQI 135
           A+LW  + R+DS G+E+LRL DR+ K    GPTHEE +T +  S    SY+ LPF  YQ+
Sbjct: 125 AELWRATKRWDSMGRELLRLRDRHGKDYCLGPTHEEAITALVASQKTLSYKQLPFLLYQV 184

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F+RLGL+ I +
Sbjct: 185 TRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQLTYSLVCDAYSSLFNRLGLRCIKV 244

Query: 196 RAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +A+ G IGG +SHEF +  D GE + V C       P    + + + + S  +       
Sbjct: 245 QADVGSIGGMVSHEFQLPVDVGEDRLVVC-------PSCHFSANMETLDSSRTNCPACQG 297

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           P   T                    +GIEVGH FY GTKYS   +A F    GK    +M
Sbjct: 298 PLTET--------------------KGIEVGHTFYLGTKYSSIFNAQFINVHGKPSLAEM 337

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKI 368
           G YG+G  R++AA IE       + WP  +AP+++ LI  K      A  ++  D    I
Sbjct: 338 GCYGLGVTRILAAAIEVLSTEDCVRWPGLLAPYQVCLIPPKKGSKEEAAAELAGDLYNHI 397

Query: 369 YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
              + ++  +V  DD     IG++   A+ LG+P  +I   + + D
Sbjct: 398 TEAVPQLQGEVLLDDRTHLTIGNRLKDANKLGYPFVIIAAKRALDD 443


>gi|228909643|ref|ZP_04073466.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228849932|gb|EEM94763.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 566

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 165/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDCLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 100/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +     V R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDVQREMGENIYNSLQEKGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|78485419|ref|YP_391344.1| prolyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|114152273|sp|Q31GQ3|SYP_THICR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78363705|gb|ABB41670.1| prolyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 572

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   L   +E P DA + SH+LMLR G+I   + G+Y+WLPLG + L  V AIIR+E
Sbjct: 1   MKTSSLLLATTRETPADAVVISHQLMLRAGIIRPLAGGLYNWLPLGVRVLRKVEAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  A E+ +P +Q  +LW ESGR ++YG E+LR  DR+ +    GPTHEE++TD+ R 
Sbjct: 61  MNKAQAQELLMPVVQPMELWEESGRAEAYGPELLRFKDRHQREFALGPTHEEIITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +  +  + +Y  M+ +
Sbjct: 121 EIRSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHMDKDSLQKTYEDMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL   P++A++G IGG+ SHEF VLAD+GE  +  S D
Sbjct: 181 YNRIFTRLGLDFRPVQADTGSIGGEGSHEFHVLADSGEDDIAFSSD 226



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 1/167 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  ++AT    + +   ++MG YGIG  RVVAA IE ++D KGII
Sbjct: 406 RGIEVGHIFQLGNKYSEALNATVLNENSRAQILEMGCYGIGVTRVVAAAIEQNYDDKGII 465

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP+++APF++ ++ ++ H      +A   +Y  L+  G +V  DD  E+ G  F   +L+
Sbjct: 466 WPEAIAPFQVCIVPMQMHKSPRVEEAVMTLYNELTAKGIEVLLDDRKERPGVMFNDMELI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P ++++G + +   ++E KHR     +D+   E + +   + S N
Sbjct: 526 GIPHRIVIGERGLDKGEIEYKHRRDEKSQDIPEAEFMEFLLGKLSGN 572


>gi|319788022|ref|YP_004147497.1| prolyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466534|gb|ADV28266.1| prolyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 565

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 153/218 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SHKLMLR GMI + + G+Y+W PLG + L  V A++REE
Sbjct: 1   MRLSRFHLHTTKETPADAELVSHKLMLRAGMIRKLAAGLYTWTPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +PT+Q  +LW E+GR+  +G ++L++ DR +    + PT EE +TD  R 
Sbjct: 61  MNRAGAVELQLPTIQPRELWEETGRWGKFGGQLLKIKDRKEAEYCFSPTAEEAITDFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQI  KFRDE+RPRFGVMR+REFLMKDAYSF ++ E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQIHTKFRDEIRPRFGVMRAREFLMKDAYSFHVSDEDLAREYENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+R+F RLGL+   ++A+SG IGGD S EF VLAD+GE
Sbjct: 181 YIRVFGRLGLEFRAVQADSGAIGGDASQEFHVLADSGE 218



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 94/181 (51%), Gaps = 4/181 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+ N    D   +   +  ARGIEVGH+F  G KYS  M  T    +GK     MG Y
Sbjct: 381 VADIRNVVAGDRAADGGEIRLARGIEVGHVFQLGRKYSQAMGFTVLDENGKAVVPAMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS--LINIKAHDQVCRDACEKIYARLSKV 375
           GIG  R+VAA IE +HD  GI+WP  +AP+ ++  +IN K   QV  +A E +   L   
Sbjct: 441 GIGVSRIVAAAIEQNHDEAGIVWPVPMAPWTVAVCVINPKKDAQV-DEAAESLLVELQAA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G D   DD G + G  FA  +L+G P +V+V ++ +     E + R  G  E +   +++
Sbjct: 500 GIDAVLDDRGLRPGPMFADMELIGIPHRVVVSARGLEAGTYEYRARSGGEAEALDRAQLL 559

Query: 436 N 436
            
Sbjct: 560 E 560


>gi|330720665|gb|EGG98912.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 576

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 156/218 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ +  L+E+P DA + SHKLMLR GMI + + G+Y+W PLG + L     IIREE
Sbjct: 1   MRATQFPINTLKESPADAAVISHKLMLRAGMIRRLAAGLYTWSPLGLRVLRKSENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  +G E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNRAGALELLMPAVQPAELWEETGRWGQFGDELLRVKDRHGREFCIGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREFLMKDAYSF L  E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPVNFYQIQTKFRDERRPRFGVMRSREFLMKDAYSFHLDAESLQQTYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y R+F R+GL    + A+SG IGG  S EF VLA++GE
Sbjct: 181 YCRVFERMGLVFRAVDADSGSIGGSQSQEFHVLAESGE 218



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 130/250 (52%), Gaps = 33/250 (13%)

Query: 200 GPIGGDL----SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD----DIISLNSIVEQ 251
           GP+G D+         VLAD       C  +     +   N D D    D+  +  +VE 
Sbjct: 341 GPVGTDIPVIVDRSAAVLAD-----FICGANETGKHMTGVNWDRDCSITDVADIREVVEG 395

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             +P        N KL         V  RGIEVGHIF  G KY+  M+AT     G+   
Sbjct: 396 DPSPCG------NGKL---------VFKRGIEVGHIFQLGQKYAAAMNATVLNEKGQAQV 440

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIY 369
           + MG YGIG  RVVAA IE ++D  GIIWP  +APF++ ++  N    +QV ++   ++Y
Sbjct: 441 MTMGCYGIGVTRVVAAAIEQNNDDNGIIWPAGLAPFQVGIVPMNYDKSEQV-KETANRVY 499

Query: 370 ARLSKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             L ++G DV+ DD  ++   G +FA  DL+G P ++++  + + ++++E + R +  R+
Sbjct: 500 QELKELGIDVYMDDRDKKTSPGVKFADMDLIGIPHRIVISDRGLKENQIEYQERRSQERQ 559

Query: 428 DMSLEEVINY 437
           +++ ++VI +
Sbjct: 560 NLAADQVIAF 569


>gi|309378830|emb|CBX22535.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 570

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/273 (46%), Positives = 175/273 (64%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +  +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEVALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             + L     +  A  A    VH  N K  DSL
Sbjct: 237 PTLPLKG---ERAAAQAELVKVHTPNVKTIDSL 266



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A +KIYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADKIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRENEAQAVAIGEIV 561


>gi|302187169|ref|ZP_07263842.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 571

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL D +++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDLHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFS 224



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   +  R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYETEAVREATDKLYADL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINY 437
           +  V+++
Sbjct: 558 VAGVLSF 564


>gi|319944615|ref|ZP_08018883.1| proline--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319742152|gb|EFV94571.1| proline--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 589

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/309 (45%), Positives = 185/309 (59%), Gaps = 17/309 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +   LP  +E P DAE+ SHKLM R GMI + + GIY+++PLG + +  + AIIREE
Sbjct: 1   MKATALHLPTFKEAPADAEVVSHKLMTRAGMIRKLAGGIYTYMPLGLRVIRRIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MDAAGAIELLMPVIQPAELWMESGRWEEYGPELLRIRDRHQRDFVIQPTSEEVVTDLARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FY IQ KFRDE RPRFGVMR REF MKDAYSFD   E +  SY KMF +
Sbjct: 121 DLRSYRQLPKNFYHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDSESALVSYRKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE          D  + S  +D+ 
Sbjct: 181 YHRIFDRLGLQYRAVAADTGSIGGSASHEFQVIADTGE----------DALVYSTGSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I L   V     P  AT     + L   + P   R  A   E   +    T  S+ +S
Sbjct: 231 ANIELAEAV-----PLLATRMAPTQPLTRTATPGQARCEAVA-EYLKLPLDQTLKSIVLS 284

Query: 300 ATFKGADGK 308
               GADG+
Sbjct: 285 TETPGADGQ 293



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N +  D  P+ +   A  RGIEVGH+FY GTKYS  M+ATF   +G+   ++MG Y
Sbjct: 401 ADIRNVQAGDPSPDGQGTLAIQRGIEVGHVFYLGTKYSQAMNATFIDENGQSKPLEMGCY 460

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           GIG  R++ A IE +HD KGIIWP S+APF++ +  +     +  R+A +++ A L   G
Sbjct: 461 GIGVTRLLGAAIEQNHDDKGIIWPASIAPFEVVVCPMGLERSEAVREAVDRLAADLQAAG 520

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                DD  E+ G  FA  +L+G PL++ VG + + +  +E+  R
Sbjct: 521 IRYVVDDRNERPGVMFADWELIGVPLRITVGDRGLKEGLLELTVR 565


>gi|257453930|ref|ZP_05619207.1| prolyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257448702|gb|EEV23668.1| prolyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 586

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 167/245 (68%), Gaps = 4/245 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LMLR GMI + + G+Y+WLP+G K L  V  IIREE
Sbjct: 1   MRASQFTFATLKETPSDADIISSQLMLRAGMIRKSASGLYTWLPMGLKTLQKVKKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+ +P +QSA+LW ESGR+++YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MDAINCQELLMPVVQSAELWQESGRWEAYGPELLRFKDRHQRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP ++YQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 LLKSYKQLPVSYYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHIDQPSLQRTYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +     F D    + N +  
Sbjct: 181 YHNIFTRLGLDFRAVQADTGSIGGFASHEFQVLAGSGEDDIV----FSDSSAYAANIELA 236

Query: 241 DIISL 245
           + ++L
Sbjct: 237 EAVTL 241



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 12/152 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KY+  ++    G  GK     MG YGIG  R+VAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGDKYAKALNCAVMGEQGKPVITMMGCYGIGVTRIVAAAIEQNHDDNGII 466

Query: 340 WP-----DSVAPFKISLINI---KAHDQVCRDA---CEKIYARLSKVGCDVFWDDMGEQI 388
           W      +S+APF ++++ +   K  D     A    E +Y  L   G DV  DD  E+ 
Sbjct: 467 WKTSSTGESLAPFTVAIVPMIKGKMKDAATDKAMQLAEALYTELKAQGVDVLLDDRDERA 526

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           G +FA  +L+G P ++++  K +S++  E+K+
Sbjct: 527 GVKFADLELIGIPHRIVISEKNISETG-EVKY 557


>gi|73662814|ref|YP_301595.1| prolyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|114152258|sp|Q49X48|SYP_STAS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72495329|dbj|BAE18650.1| prolyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 566

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P  AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+REE
Sbjct: 1   MKQSKVFIPTMKEVPAGAEALSHRLLLKAGLIKQSTSGIYSYLPLAARVLNNIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MERIDAVEILMPALQQAELWEESGRWSAYGPELMRLQDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    +    SY  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEDSLDASYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S+
Sbjct: 181 YGRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSE 225



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLLMGCYGIGVSRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF + LI I       R+  +++Y +L K   DV +DD  E+ G +F  ADL+
Sbjct: 462 IWPKSVTPFDLHLITINPKKDDQRELADQLYTQL-KENYDVLYDDRKERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P++V+VG K  ++  VE+K R TG  ED+ ++ +INY +  +SN
Sbjct: 521 GLPVRVVVG-KNAAEGIVEVKRRDTGESEDVHVDNLINYVNTLYSN 565


>gi|228922573|ref|ZP_04085873.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837002|gb|EEM82343.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 566

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/253 (47%), Positives = 166/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMIFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|299529723|ref|ZP_07043160.1| prolyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298722586|gb|EFI63506.1| prolyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 580

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYC 224



 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+     A  RGIE+GH+FY GTKYS  M ATF G +GK  + +M
Sbjct: 390 AVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGTKYSKAMEATFLGDNGKPQHFEM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           G YGIG  R+ AA +E +HD +G+IWPD++APF + +  I     +  +   EK+Y  L 
Sbjct: 450 GCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVICPIGMGRSEAVKTEAEKLYGELL 509

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G DV  DD  E+ G+  A  +L+G P +V++G + + +  VE + R       ++  E
Sbjct: 510 ALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGLKEGVVEYQQRRDTEATKLATNE 569

Query: 434 VINYASHRFS 443
           V+ +   R  
Sbjct: 570 VLAHLKSRLG 579


>gi|264676905|ref|YP_003276811.1| prolyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262207417|gb|ACY31515.1| prolyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 580

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYC 224



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+     A  RGIE+GH+FY GTKYS  M ATF G +GK  + +M
Sbjct: 390 AVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGTKYSKAMEATFLGDNGKPQHFEM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           G YGIG  R+ AA +E +HD +G+IWPD++APF + +  I     +  +   EK+Y  L 
Sbjct: 450 GCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVICPIGMGRSEAVKTEAEKLYGELL 509

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G DV  DD  E+ G+  A  +L+G P +V++G + + +  VE + R       ++  E
Sbjct: 510 ALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGLKEGVVEYQQRRDTEATKLATNE 569

Query: 434 VINYASHRFS 443
           V+ +   R  
Sbjct: 570 VLAHLKSRLG 579


>gi|146306290|ref|YP_001186755.1| prolyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166980142|sp|A4XRQ7|SYP_PSEMY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145574491|gb|ABP84023.1| prolyl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 571

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAIQPAELWQESGRWVQYGPELLRVKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YCNVFSRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAFS 224



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 111/193 (57%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M+    G +GK   +
Sbjct: 378 PLPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAMNCQVLGENGKPVTL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+W D++APF I+L+ ++   +  R+A +K+YA L
Sbjct: 438 TMGCYGIGVSRVVAAAIEQNHDERGILWNDALAPFHIALVPLRYETEQVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +V+V  + +++  +E K R     + + 
Sbjct: 498 TAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRVVVSDRGLAEGNLEYKSRAETEAQAVP 557

Query: 431 LEEVINYASHRFS 443
           L E++ +   R S
Sbjct: 558 LAEILPFLQARIS 570


>gi|238019359|ref|ZP_04599785.1| hypothetical protein VEIDISOL_01223 [Veillonella dispar ATCC 17748]
 gi|237864058|gb|EEP65348.1| hypothetical protein VEIDISOL_01223 [Veillonella dispar ATCC 17748]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE   V+C+K
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTK 226



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 24/233 (10%)

Query: 201 PIGGDLSHEFIVLADTG--ETQVFCS----KDFMDFPI-PSENTDFDDII--SLNSIVEQ 251
           P+G   + EF ++ D    ET   C     KD     I P  + + +DII   +  I + 
Sbjct: 334 PVGLKQTEEFAIVVDESVMETYNVCGGANKKDAHYININPKRDFNVEDIIVAPIRLITDD 393

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
              P    +  H               A+GIEVG +F  GTKYS  + ATF   +G+ + 
Sbjct: 394 DVCPTCGGTLEH---------------AKGIEVGQVFKLGTKYSEALQATFLDQNGRPNP 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R +AA IE  HD  GIIWP ++APF+  ++ I A D+      + IY  
Sbjct: 439 MIMGCYGIGVSRTLAAAIEQYHDENGIIWPRAIAPFEAVIVPINAKDEALMSTSQTIYTA 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           L   G DV  DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R +G
Sbjct: 499 LQDAGVDVLLDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKSG 551


>gi|300113463|ref|YP_003760038.1| prolyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299539400|gb|ADJ27717.1| prolyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 574

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/221 (53%), Positives = 156/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR   I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGSFIRRLAAGLYTWLPLGLRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPAVQPAELWRETGRWEQYGSELLRFTDRHQRFFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQLKFRDE+RPRFGVMRSREFLMKDAYSF         +Y++M+ +
Sbjct: 121 EIQSYKQLPANFYQIQLKFRDEIRPRFGVMRSREFLMKDAYSFHTDQTSLGQTYHQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R+GL    ++A++G IGG  SHEF VLA +GE  +
Sbjct: 181 YSCIFDRIGLTFRAVQADTGMIGGKTSHEFHVLATSGEDAI 221



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 98/173 (56%), Gaps = 3/173 (1%)

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T+D+ N    D  P  E     ARGIEVGHIF  G KYS  M+AT     G+   +
Sbjct: 377 PEPTTADIRNVVDGDPSPDGEGTLSIARGIEVGHIFQLGKKYSQAMNATVLDEAGRAINL 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD  GIIWP  +APF+++L+ I AH  V  ++  +++Y  
Sbjct: 437 AMGCYGIGVSRVVAAAIEQNHDEHGIIWPAPIAPFQLALVPINAHKSVRVKEMSDQLYTE 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           L   G +V  DD   + G  FA  DL+G P ++++  + + +S VE K R  G
Sbjct: 497 LQAAGFEVLLDDRQLRPGVIFADMDLIGIPHRLVISERGLENSTVEYKRRQDG 549


>gi|5911945|emb|CAB55948.1| hypothetical protein [Homo sapiens]
          Length = 409

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 218/401 (54%), Gaps = 36/401 (8%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  A+LW 
Sbjct: 4   SQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVNMPSLSPAELWQ 63

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFR 140
            + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LPF  YQ+  KFR
Sbjct: 64  ATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQVTRKFR 123

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LGL  + ++A+ G
Sbjct: 124 DEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLGLPFVKVQADVG 183

Query: 201 PIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            IGG +SHEF +  D GE ++  C +        S N +  D+  +N    Q   P   T
Sbjct: 184 TIGGTVSHEFQLPVDIGEDRLAICPRCSF-----SANMETLDLSQMNCPACQ--GPLTKT 236

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               +GIEVGH FY GTKYS   +A F    GK    +MG YG+
Sbjct: 237 --------------------KGIEVGHTFYLGTKYSSIFNAQFTNVCGKPTLAEMGCYGL 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLS---- 373
           G  R++AA IE       + WP  +AP++  LI  K  + +Q   +   ++Y  ++    
Sbjct: 277 GVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQLYDHITEAVP 336

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           ++  +V  DD     IG++   A+  G+P  +I G + + D
Sbjct: 337 QLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALED 377


>gi|150015022|ref|YP_001307276.1| prolyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|189083493|sp|A6LPP0|SYP_CLOB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149901487|gb|ABR32320.1| prolyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 570

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 155/226 (68%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + G+Y+++PLG K L  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMAAGVYNYMPLGLKVLKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW ESGR+D+YG EM RL DR D+    GPTHEEV TDI R+
Sbjct: 61  MNAAGAQEFLASAIIPAELWQESGRWDAYGAEMFRLKDRGDRDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   +Y+KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQGGLDLAYDKMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFCS+
Sbjct: 181 YVKIFNRCGLDAKCVAADSGAIGGSNSAEFMVKSEVGEDDVVFCSE 226



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG EVGHIF  GTKYS  M+A F   DGK+    MG YGIG  R +A++IE  HD  GI
Sbjct: 401 ARGTEVGHIFKLGTKYSEAMNAKFIDEDGKEKPFIMGCYGIGVTRTMASIIEQHHDENGI 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAP+ +S+I +   D+       +IY +L+  G +   DD  E+ G +F  ++L+
Sbjct: 461 VWPLSVAPYHVSVIPVNVKDEEQARIANEIYEKLTSAGIEALLDDRNERAGVKFKDSELM 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P+++ VG K ++D ++E K R  G  E + +E+V N     F  N+
Sbjct: 521 GIPMRITVGKK-INDGEIEFKLR-DGEMEVIKIEDVYNIIKGEFEKNK 566


>gi|148244484|ref|YP_001219178.1| prolyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166980170|sp|A5CX68|SYP_VESOH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146326311|dbj|BAF61454.1| prolyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 560

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 164/239 (68%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K  +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V  IIR+E
Sbjct: 1   MKTTKLLIPTQKEAPNDAKIISHQLMIRAGLISKLALGLYSYLPIGIRVLQKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+T + R 
Sbjct: 61  MNKSGAQEVLMPIVQPAELWKESGRWNKYGAELLRFIDRHQREFCLGPTHEEVITHLARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGV+R REF+MKDAYSF +     + +Y  M+ +
Sbjct: 121 YLRSYKQLPMNFYQIQTKFRDEIRPRFGVIRMREFIMKDAYSFHIDEASLQETYEVMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  IF+RLGL    + A+SG IGG+ SHEF VLAD+GE  + C  D  D+    E   F
Sbjct: 181 YCNIFNRLGLNYRIVLADSGSIGGNTSHEFHVLADSGEDTI-CFSDKSDYAANIEKVTF 238



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 9/198 (4%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEV 284
             DF   +   D+  +I +N     W       +D+ N    D  P+ K   +  RGIEV
Sbjct: 347 LCDFVCGANECDYH-LIGVN-----WQGIKFIDADLRNAVDGDYSPDGKGKLMIKRGIEV 400

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKYS  M A   G  GK     MG YGIG  R++AA IE +HD KGII+  ++
Sbjct: 401 GHIFQLGTKYSSVMKANVIGESGKAVTTTMGCYGIGVTRIIAAFIEQNHDDKGIIFSQAI 460

Query: 345 APFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF+I ++ I  +     +   +++Y +  K   DV  DD  E +G  FA ++LLG P +
Sbjct: 461 APFQIVIVPINYNKSTRVKALADRLYQQFIKASIDVLLDDRKEHVGIMFADSELLGIPHR 520

Query: 404 VIVGSKFVSDSKVEIKHR 421
           +++      +  VE K R
Sbjct: 521 IVISDTHADNGSVEYKAR 538


>gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300072496|gb|ADJ61895.1| prolyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
          Length = 575

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGAGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++  G E++R+ DR+ +     PT EEV+TD+ RS
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVKDRHGRDFAIQPTSEEVVTDVARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 121 ELRSYKQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVDGLKKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y+RIF R GL+   + A++G IGG  SHEF V+A TGE   V+C
Sbjct: 181 YVRIFTRFGLEFRAVAADNGAIGGSGSHEFHVVAATGEDALVYC 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K V A  RGIEVGH+F  GT YS  M AT+    GK   +
Sbjct: 383 PEPLVADIRNVVEGDASPDGKGVLAIQRGIEVGHVFQLGTTYSEAMKATYLDEAGKPQPL 442

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D +GIIWP S+APF++ L  +     +  +   +K+YA+
Sbjct: 443 VMGCYGIGVTRILGAAIEQNFDDRGIIWPTSIAPFEVVLCPMGYDRSEAVKTEIDKLYAQ 502

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS+ G DV  DD GE+ G+ FA  +L+G P +++VG + + D  +E + R       + L
Sbjct: 503 LSEAGVDVVLDDRGERPGAMFADWELIGVPHRIVVGDRGLKDGNIEYQGRRDTEATQVPL 562

Query: 432 EEVINYASHRFS 443
            E + +   + +
Sbjct: 563 AEALAFIQGKLA 574


>gi|282850156|ref|ZP_06259535.1| proline--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579649|gb|EFB85053.1| proline--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE   V+C+K
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTK 226



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 97/166 (58%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG  R +AA IE  HD  GI
Sbjct: 406 AKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIGVSRTLAAAIEQYHDENGI 465

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+APF+  ++ I A D+      + IY  L   G DV  DD  ++ G +F  ADL+
Sbjct: 466 IWPRSIAPFEAVIVPINAKDEALMSTSQTIYTALQNAGVDVLLDDRKDRAGVKFKDADLI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G+PL++ V    + +++VEI+ R +G     +++ V +  +    N
Sbjct: 526 GYPLRITVSKNTLENNEVEIQIRKSGEALPCAIDSVADKVTELLQN 571


>gi|294791808|ref|ZP_06756956.1| proline--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294793669|ref|ZP_06758806.1| proline--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455239|gb|EFG23611.1| proline--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294457038|gb|EFG25400.1| proline--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE   V+C+K
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTK 226



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 125/253 (49%), Gaps = 24/253 (9%)

Query: 201 PIGGDLSHEFIVLADTG--ETQVFCS----KDFMDFPI-PSENTDFDDII--SLNSIVEQ 251
           PIG   + EF ++ D    ET   C     KD     I P  + + +DII   +  I + 
Sbjct: 334 PIGLKQTEEFAIVVDESVMETYNVCGGANKKDAHYVNINPKRDFNVEDIIVAPIRLITKD 393

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
              P    +  H               A+GIEVG +F  GTKYS  + ATF   +G+ + 
Sbjct: 394 DVCPKCGGALEH---------------AKGIEVGQVFKLGTKYSEALQATFLDQNGRPNP 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R +AA IE  HD  GIIWP S+APF+  ++ I A D+      + IY  
Sbjct: 439 MIMGCYGIGVSRTLAAAIEQYHDENGIIWPRSIAPFEAVIVPINAKDEALMSTSQTIYTA 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R +G     ++
Sbjct: 499 LQNAGVDVLLDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKSGEALPCAI 558

Query: 432 EEVINYASHRFSN 444
           + V +  +    N
Sbjct: 559 DSVSDKVTELLQN 571


>gi|260914628|ref|ZP_05921094.1| proline-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631227|gb|EEX49412.1| proline-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 571

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/245 (49%), Positives = 165/245 (67%), Gaps = 4/245 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEASIVSHQLMLRAGMIRPLASGLYTWLPTGLRVLNKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +   Q A+LW ESGR++ YG E+LR  DR D+  + GPT+EEV+TD+ R 
Sbjct: 61  MDKSGALEVKMAVTQPAELWQESGRWEEYGPELLRFKDRGDRDFVIGPTNEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ECASYKQLPLNLYHIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTHECLQKTYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISL 245
           + ++L
Sbjct: 237 EAVAL 241



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 117/193 (60%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M+AT +G DG+   +
Sbjct: 379 PLPQIADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSAAMNATVQGEDGRPQTM 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YGIG  RV+AA IE  HD +GIIWP+++APFK++++ +  H  +  +   E++Y  
Sbjct: 439 IMGCYGIGVTRVIAAAIEQHHDERGIIWPENIAPFKVAIVPMNMHKSESVQQFAEELYRT 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V +DD  E+ G  FA  +L+G P  +++G K +   ++E K+R +G +E ++ 
Sbjct: 499 LMAQGVEVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEIEYKNRRSGEKEMIAK 558

Query: 432 EEVINYASHRFSN 444
           E++++    +F+ 
Sbjct: 559 EQLLDVLKAKFNQ 571


>gi|329118470|ref|ZP_08247175.1| proline--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465411|gb|EGF11691.1| proline--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 571

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/231 (51%), Positives = 162/231 (70%), Gaps = 2/231 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASRFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+TDI R 
Sbjct: 61  MERAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG-SKHSYNKMFV 179
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF    E   +  Y  M+ 
Sbjct: 121 EITSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYESLVRDGYQPMYD 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+
Sbjct: 181 AYCRIFDRLGLNYRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDASDY 230



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 100/158 (63%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KYS  M+A F  ++GK   ++MG YGIG  R+VAA IE ++DG+GI
Sbjct: 405 ARGIEVGHVFQLRDKYSAAMNAAFLDSNGKSQIMEMGCYGIGITRIVAAAIEQNNDGRGI 464

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW D++APF+  ++  N K  D V R+A +KIYA L   G DV  DD  E+ G   A ++
Sbjct: 465 IWTDAMAPFQAVIVPMNYKKSDAV-REAADKIYAELCAAGADVLLDDRDERAGVLLADSE 523

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           LLG P ++++G + + + KVE   R     + +++EE 
Sbjct: 524 LLGIPHRIVIGDRGLKEGKVEYARRTDSEAQSVAVEEA 561


>gi|74152256|dbj|BAE32409.1| unnamed protein product [Mus musculus]
          Length = 511

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 217/412 (52%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    D    S +LML+ G+I   S G Y  +P   +A++ +  +I +E    G  +++
Sbjct: 95  LEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKIN 154

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 155 MPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLP 214

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ +Y  +  +Y R+F RLG
Sbjct: 215 LLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLG 274

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ +  RA+ G IGG +SHEF +  D GE + V C          S NT+  D+     I
Sbjct: 275 LRWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHF-----SANTEILDLS--QKI 327

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                 P   T                    +GIEVGH FY GTKYS   +A F  A G+
Sbjct: 328 CPDCQGPLTET--------------------KGIEVGHTFYLGTKYSSIFNALFTNAHGE 367

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       I WP  +AP+++ +I  K  + +    +  E
Sbjct: 368 SLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVE 427

Query: 367 KIY----ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           K+Y      + ++  +V  DD     IG++   A+ LG+P  +I G + + D
Sbjct: 428 KLYDDVMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIAGKRALED 479


>gi|73919762|sp|Q8CFI5|SYPM_MOUSE RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|24416455|gb|AAH38817.1| Prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 475

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 217/412 (52%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    D    S +LML+ G+I   S G Y  +P   +A++ +  +I +E    G  +++
Sbjct: 59  LEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKIN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ +Y  +  +Y R+F RLG
Sbjct: 179 LLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ +  RA+ G IGG +SHEF +  D GE + V C          S NT+  D+     I
Sbjct: 239 LRWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHF-----SANTEILDLS--QKI 291

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                 P   T                    +GIEVGH FY GTKYS   +A F  A G+
Sbjct: 292 CPDCQGPLTET--------------------KGIEVGHTFYLGTKYSSIFNALFTNAHGE 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       I WP  +AP+++ +I  K  + +    +  E
Sbjct: 332 SLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVE 391

Query: 367 KIY----ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           K+Y      + ++  +V  DD     IG++   A+ LG+P  +I G + + D
Sbjct: 392 KLYDDVMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIAGKRALED 443


>gi|229134626|ref|ZP_04263436.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228648887|gb|EEL04912.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 566

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 165/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|229025259|ref|ZP_04181679.1| Prolyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228736012|gb|EEL86587.1| Prolyl-tRNA synthetase [Bacillus cereus AH1272]
          Length = 566

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTI 221



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|89344805|gb|ABD69008.1| prolyl-tRNA synthetase [Rhodoferax ferrireducens T118]
          Length = 600

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 155/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R GMI +   GIYS +P+G + +  V  I+REE
Sbjct: 21  MKASQFFISTLKEAPADAEVVSHKLMTRAGMIKKLGAGIYSLMPMGLRVVRKVEQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++S G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 81  MNRAGAVELVMPVVQPAELWQETGRFESNGPELLRIKDRHGRDFVVQPTSEEVVTDIARQ 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 141 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQASAKASYQVMAAA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 201 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 244



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D+ P+ + V A  RGIE+GH+FY GTKYS  M+ATF   +GK  +++M
Sbjct: 410 ALVADLRNVVAGDASPDGQGVLAIERGIEIGHVFYLGTKYSQAMNATFLDVNGKPQFMEM 469

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLS 373
           G YGIG  R+ AA IE +HD +GIIWPD++APF + L  I        + A +K+YA L 
Sbjct: 470 GCYGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVLCPISPERFPDVKAASDKLYAELL 529

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G DV  DD GE+ G+ FA  +L+G P +V +G + +   +VE +HR
Sbjct: 530 AAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKAGEVEYQHR 577


>gi|163941557|ref|YP_001646441.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|226731430|sp|A9VT57|SYP_BACWK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163863754|gb|ABY44813.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 566

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 165/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKSVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|257792203|ref|YP_003182809.1| prolyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|257476100|gb|ACV56420.1| prolyl-tRNA synthetase [Eggerthella lenta DSM 2243]
          Length = 578

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 124/285 (43%), Positives = 185/285 (64%), Gaps = 15/285 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEIASH+L+LR G I + + G+Y++LPLG++ L  V  I+REE
Sbjct: 1   MRMSQLYAPTLKEDPADAEIASHRLLLRAGFIRKTASGVYTFLPLGKRVLAKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 61  MDGIGAQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP + YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF    E  + +Y+ M  +
Sbjct: 121 ELRSYKELPLSLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHADQESLQKTYDDMSEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y RI  R+G+   P+ A+ G IGG ++ EF+ LA+ GE + V C+  +      + NT+ 
Sbjct: 181 YGRICDRMGMDYRPVEADPGQIGGSVTCEFMALAEAGEAELVHCTCGY------AANTEA 234

Query: 240 DDIISLNSIVEQWTAPY--AATSDVHN---EKLFDSLPENKRVSA 279
            D ++  ++   +  P    AT  VH       F  +PE+  V A
Sbjct: 235 GDCLARPTV---YDVPMEKVATPGVHTIAELAAFLDIPESSTVKA 276



 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 103/169 (60%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIEV  +F  G KYS  M ATF   DG +    MG YG+G  R +AA++E  +D  G
Sbjct: 396 GARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMGCYGVGISRTMAAIVEQHNDENG 455

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP +VAP  + +I +   D   + A EK+ + L+K+G +V  DD  E+ G +FA ADL
Sbjct: 456 IMWPLTVAPAHVCVIPLTVGDDEVQPAAEKLASDLAKLGLEVVIDDRKERAGVKFADADL 515

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G+PLQVIVG + +++ KVEIK R TG R D+ L  + +  +    N +
Sbjct: 516 IGWPLQVIVGKRGLAEQKVEIKRRSTGARRDIPLAALTDALAFSQRNAK 564


>gi|162289255|ref|YP_522539.2| prolyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|114152240|sp|Q21YZ5|SYP_RHOFD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 580

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 155/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R GMI +   GIYS +P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGMIKKLGAGIYSLMPMGLRVVRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++S G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELVMPVVQPAELWQETGRFESNGPELLRIKDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQASAKASYQVMAAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D+ P+ + V A  RGIE+GH+FY GTKYS  M+ATF   +GK  +++M
Sbjct: 390 ALVADLRNVVAGDASPDGQGVLAIERGIEIGHVFYLGTKYSQAMNATFLDVNGKPQFMEM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLS 373
           G YGIG  R+ AA IE +HD +GIIWPD++APF + L  I        + A +K+YA L 
Sbjct: 450 GCYGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVLCPISPERFPDVKAASDKLYAELL 509

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G DV  DD GE+ G+ FA  +L+G P +V +G + +   +VE +HR
Sbjct: 510 AAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKAGEVEYQHR 557


>gi|229174485|ref|ZP_04302017.1| Prolyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228609045|gb|EEK66335.1| Prolyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 566

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTI 221



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|229013002|ref|ZP_04170167.1| Prolyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228748256|gb|EEL98116.1| Prolyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 566

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 165/253 (65%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 98/162 (60%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + +I +       R+    IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKSVAPFHVHVIPVNMKSDAQREMGGNIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|15603235|ref|NP_246309.1| prolyl-tRNA synthetase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|81856712|sp|Q9CL72|SYP_PASMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12721741|gb|AAK03454.1| ProS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 571

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/245 (48%), Positives = 166/245 (67%), Gaps = 4/245 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEASIVSHQLMLRAGMIRPLASGLYTWLPTGLRVLNKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +   Q A+LW ESGR++ YG E+LR  DR ++  + GPT+EEV+TD+ R 
Sbjct: 61  MDKSGALEVKMAVTQPAELWQESGRWEEYGPELLRFKDRGERDFVIGPTNEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYHIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTHECLQKTYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S +  DF   + N +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSTE-SDF---AANIELA 236

Query: 241 DIISL 245
           + ++L
Sbjct: 237 EAVAL 241



 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 119/193 (61%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M+AT +G DG+   +
Sbjct: 379 PVPHIADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSAAMNATVQGEDGRPQTM 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            MG YGIG  RV+AA IE  HD +GIIWPD++APFK++++ +  H  +  +   E++Y  
Sbjct: 439 IMGCYGIGVTRVIAAAIEQHHDERGIIWPDNIAPFKVAIVPMNMHKSESVQQFAEELYRT 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V +DD  E+ G  FA  +L+G P  +++G K +   ++E K+R +G +E ++ 
Sbjct: 499 LTAQGVEVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEIEYKYRRSGEKEMIAK 558

Query: 432 EEVINYASHRFSN 444
           +++++    +F++
Sbjct: 559 DQLLDVLKAKFAS 571


>gi|182420015|ref|ZP_02951249.1| prolyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237666786|ref|ZP_04526771.1| proline--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376052|gb|EDT73639.1| prolyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657985|gb|EEP55540.1| proline--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 570

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 155/226 (68%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + GIY+++PLG K L NV  I+REE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMAAGIYNYMPLGLKVLKNVEDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW ESGR+D+YG EM R+ DR  +    GPTHEEV TDI R+
Sbjct: 61  MNAAGAQEFLASAMIPAELWQESGRWDAYGAEMFRVKDRGARDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G    +NKM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDKDQDGLDIVFNKMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFCS+
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDVVFCSE 226



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG EVGHIF  GTKYS  M+A F   DGK+    MG YGIG  R +A++IE  HD  GI
Sbjct: 401 ARGTEVGHIFKLGTKYSDAMNANFIDEDGKEKPFVMGCYGIGVTRTMASIIEQHHDENGI 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+ IS+I +   D+       ++Y +L  +G +V  DD  E+ G +F  ++L+
Sbjct: 461 IWPLSVAPYHISVIPVNVKDEEQVKIATELYDQLFSMGVEVLLDDRNERAGVKFKDSELM 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P++V VG K ++D +VE K R  G  E + + +V N     F  N
Sbjct: 521 GIPMRVTVGKK-ITDGEVEFKLR-DGDMEVIKISDVCNIVKGEFEKN 565


>gi|296208047|ref|XP_002750943.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Callithrix jacchus]
          Length = 475

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 144/407 (35%), Positives = 217/407 (53%), Gaps = 38/407 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  
Sbjct: 65  DLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQVIGGQKVNMPSLSP 124

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQI 135
           A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LPF  YQ+
Sbjct: 125 AELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQV 184

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F+RLGL+ + +
Sbjct: 185 TRKFRDEPRPRFGLLRCREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNRLGLRFVKV 244

Query: 196 RAESGPIGGDLSHEFIVLADTGE--TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
           +A  G IGG +SHEF +  D GE    +  S  F      S N +  D+  +N    Q  
Sbjct: 245 QANVGSIGGTMSHEFQLPMDIGEDWLAICPSCSF------SANMETLDVSQMNCPACQ-- 296

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            P   T                    +GIEVGH FY GTKYS   +A F    GK    +
Sbjct: 297 GPLTKT--------------------KGIEVGHTFYLGTKYSSIFNAQFTNVYGKPSLAE 336

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYAR 371
           MG YG+G  R++AA IE       + WP  +AP++  LI  K  + ++   +   ++Y  
Sbjct: 337 MGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELAGQLYDH 396

Query: 372 LS----KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           ++    ++  +V  DD     IG++   A   G+P  +I G + + D
Sbjct: 397 ITEAVPQLHGEVLLDDRTHLTIGNRLKDASKFGYPFVIIAGKRALED 443


>gi|194014474|ref|ZP_03053091.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194013500|gb|EDW23065.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 565

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE  SH+L++R G I Q++ GIY +LPL  K + ++ +I+R+E
Sbjct: 1   MRQSLTFIPTLREVPADAEAKSHQLLVRAGFIRQNTSGIYHYLPLAHKVIQHIQSIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQ A++W ESGR+ +YG E++R+ DR+ +    GPTHEEV+T + RS
Sbjct: 61  MEKAGAAELLMPVLQQAEMWQESGRWYTYGPELMRMKDRHGREFALGPTHEEVITSLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  +PE    +YNKMF +
Sbjct: 121 EVKSYKKLPLTLYQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHSSPESLDDTYNKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  +F ++GL   P+ A+SG +GG  +HEF+ L++ GE  +  S
Sbjct: 181 YSNVFSKVGLNFRPVIADSGAMGGKDTHEFMALSEVGEDTIAYS 224



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 102/159 (64%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  GT+YS  M AT+   +G+   + MG YGIG  R ++A++E  HD KGI
Sbjct: 404 AKGIEVGQVFKLGTRYSESMDATYLDENGRAQPMIMGCYGIGISRTLSAIVEQHHDEKGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP++VAP+ + L+ +   +   ++  E +Y RL   G DV +DD  E+ G +FA +DL+
Sbjct: 464 IWPEAVAPYDLHLLALNMKNDAQKELAETLYERLEDEGFDVLFDDRQERAGVKFADSDLI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P+++  G K   +  VE+K R +G   ++S++E+I++
Sbjct: 524 GLPIRISCG-KRSEEGIVEVKFRKSGESHEVSVDELISF 561


>gi|59800999|ref|YP_207711.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|81311217|sp|Q5F938|SYP_NEIG1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|59717894|gb|AAW89299.1| putative prolyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 570

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 126/275 (45%), Positives = 178/275 (64%), Gaps = 9/275 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + RIF RLGL   P+ A++G IGG  SHEF VLA++GE  V    D  D+   + N +  
Sbjct: 181 HCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE-DVIAYSDTSDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPE 273
             + L     +  A  A  + VH  N K  +SL E
Sbjct: 237 PTLPLKG---ERAAAQAVLTKVHTPNVKTIESLVE 268



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  ++APF++ ++  N K  D V R+A ++IYA L   G DV  DD  E+ G     ++
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTV-REAADRIYAELLAAGADVLLDDRDERAGVLLNDSE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P ++++G + + +  VE   R     + +++ E++
Sbjct: 523 LLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIV 561


>gi|148698861|gb|EDL30808.1| prolyl-tRNA synthetase (mitochondrial)(putative), isoform CRA_a
           [Mus musculus]
 gi|148698862|gb|EDL30809.1| prolyl-tRNA synthetase (mitochondrial)(putative), isoform CRA_a
           [Mus musculus]
          Length = 475

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 217/412 (52%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    D    S +LML+ G+I   S G Y  +P   +A++ +  +I +E    G  +++
Sbjct: 59  LEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKIN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ +Y  +  +Y R+F RLG
Sbjct: 179 LLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ +  RA+ G IGG +SHEF +  D GE + V C          S NT+  D+     I
Sbjct: 239 LQWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHF-----SANTEILDLS--QKI 291

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                 P   T                    +GIEVGH FY GTKYS   +A F  A G+
Sbjct: 292 CPDCQGPLTET--------------------KGIEVGHTFYLGTKYSSIFNALFTNAHGE 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       I WP  +AP+++ +I  K  + +    +  E
Sbjct: 332 SLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVE 391

Query: 367 KIY----ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           K+Y      + ++  +V  DD     IG++   A+ LG+P  +I G + + D
Sbjct: 392 KLYDDVMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIAGKRALED 443


>gi|221068963|ref|ZP_03545068.1| prolyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220713986|gb|EED69354.1| prolyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 580

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKATQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE   V+C
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYC 224



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+     A  RGIE+GH+FY GTKYS  M ATF G +GK  + +M
Sbjct: 390 AVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGTKYSKAMDATFLGDNGKPQHFEM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           G YGIG  R+ AA +E +HD +G+IWPD++APF + +  I     +  +   EK+Y  L 
Sbjct: 450 GCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVICPIGMGRSEAVKTEAEKLYGELL 509

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G DV  DD  E+ G+  A  +L+G P +V++G + + +  VE + R       ++  E
Sbjct: 510 ALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGLKEGVVEYQQRRDTEATKLATNE 569

Query: 434 VINYASHRFS 443
           V+ +   R  
Sbjct: 570 VLGHLKSRLG 579


>gi|326795786|ref|YP_004313606.1| prolyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326546550|gb|ADZ91770.1| Prolyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 577

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/265 (46%), Positives = 173/265 (65%), Gaps = 10/265 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L++ P DA + SH+LM+R GMI Q SKG+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRASNYLFSTLRDAPTDAVVTSHQLMVRAGMIRQISKGLYTWLPTGLRVLKKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+++    GPTHEEV+T++ R+
Sbjct: 61  MEKAGALEVMMPGVQPAELWEESGRWQKYGPELLRMKDRHNRDYCLGPTHEEVITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF    +  + +Y+ M  +
Sbjct: 121 ELTSYKQLPINFFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHSNSDSLRQTYDVMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R+GL   P++A++G IGG  SHEF VLA +GE       D + F   S++++F 
Sbjct: 181 YCNVFDRIGLDYRPVQADTGSIGGAYSHEFHVLAQSGE-------DDIAF---SDSSEFA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
             + L   V    +P   T +V  E
Sbjct: 231 ANVELAEAVCSKKSPDTPTQEVSEE 255



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D  P  E   V  RGIEVGHIF  G +YS  + A+    +GK   + MG 
Sbjct: 388 TKDIRNVVEGDPSPDGEGHIVIKRGIEVGHIFQLGQQYSEALRASVLDENGKAQTMWMGC 447

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE + D KGI+WP+S+ PF +++I +     +  RD C+ +Y  L ++
Sbjct: 448 YGIGVSRIVAAAIEQNFDDKGILWPESITPFSVAIIAMNYDKSEAVRDECDHLYNELKQL 507

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +FA  +LLG P +++VG K + ++ +E K+R TG  ED+  +E +
Sbjct: 508 GIDVLLDDRKERPGVKFADCELLGIPHRLVVGDKGLKNNSLEYKYRKTGEGEDVPKDEAV 567

Query: 436 NYASHRFSNN 445
            +       N
Sbjct: 568 KFIRKVLQAN 577


>gi|317490123|ref|ZP_07948612.1| prolyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325833438|ref|ZP_08165887.1| proline--tRNA ligase [Eggerthella sp. HGA1]
 gi|316910828|gb|EFV32448.1| prolyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325485362|gb|EGC87831.1| proline--tRNA ligase [Eggerthella sp. HGA1]
          Length = 584

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 124/285 (43%), Positives = 185/285 (64%), Gaps = 15/285 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEIASH+L+LR G I + + G+Y++LPLG++ L  V  I+REE
Sbjct: 7   MRMSQLYAPTLKEDPADAEIASHRLLLRAGFIRKTASGVYTFLPLGKRVLAKVENIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 67  MDGIGAQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITSLVRN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP + YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF    E  + +Y+ M  +
Sbjct: 127 ELRSYKELPLSLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHADQESLQKTYDDMSEA 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y RI  R+G+   P+ A+ G IGG ++ EF+ LA+ GE + V C+  +      + NT+ 
Sbjct: 187 YGRICDRMGMDYRPVEADPGQIGGSVTCEFMALAEAGEAELVHCTCGY------AANTEA 240

Query: 240 DDIISLNSIVEQWTAPY--AATSDVHN---EKLFDSLPENKRVSA 279
            D ++  ++   +  P    AT  VH       F  +PE+  V A
Sbjct: 241 GDCLARPTV---YDVPMEKVATPGVHTIAELAAFLDIPESSTVKA 282



 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 103/169 (60%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIEV  +F  G KYS  M ATF   DG +    MG YG+G  R +AA++E  +D  G
Sbjct: 402 GARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMGCYGVGISRTMAAIVEQHNDENG 461

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP +VAP  + +I +   D   + A EK+ + L+K+G +V  DD  E+ G +FA ADL
Sbjct: 462 IMWPLTVAPAHVCVIPLTVGDDEVQPAAEKLASDLAKLGLEVVIDDRKERAGVKFADADL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G+PLQVIVG + +++ KVEIK R TG R D+ L  + +  +    N +
Sbjct: 522 IGWPLQVIVGKRGLAEQKVEIKRRSTGARRDIPLAALTDALAFSQRNAK 570


>gi|229168558|ref|ZP_04296281.1| Prolyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614964|gb|EEK72066.1| Prolyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 566

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 154/221 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTI 221



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKSVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|157692336|ref|YP_001486798.1| prolyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|166980100|sp|A8FDC1|SYP_BACP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157681094|gb|ABV62238.1| proline--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 565

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE  SH+L++R G I Q++ GIY +LPL  K + ++ +I+R+E
Sbjct: 1   MRQSLTFIPTLREVPADAEAKSHQLLVRAGFIRQNTSGIYHYLPLAHKVIQHIQSIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQ A++W ESGR+ +YG E++R+ DR+ +    GPTHEEV+T + RS
Sbjct: 61  MEKAGAAELLMPVLQQAEMWQESGRWYTYGPELMRMKDRHGREFALGPTHEEVITSLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  +PE    +YNKMF +
Sbjct: 121 EVKSYKKLPLTLYQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHSSPESLDDTYNKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  +F ++GL   P+ A+SG +GG  +HEF+ L++ GE  +  S
Sbjct: 181 YSNVFSKVGLNFRPVIADSGAMGGKDTHEFMALSEVGEDTIAYS 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 102/159 (64%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  GT+YS  M AT+   +G+   + MG YGIG  R ++A++E  HD KGI
Sbjct: 404 AKGIEVGQVFKLGTRYSESMDATYLDENGRAQPMIMGCYGIGISRTLSAIVEQHHDEKGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP++VAP+ + L+ +   +   ++  E +Y RL   G DV +DD  E+ G +FA +DL+
Sbjct: 464 IWPEAVAPYDLHLLALNMKNDAQKELAETLYERLENEGFDVLFDDRQERAGVKFADSDLI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P+++  G K   +  VE+K R +G   ++S++E+I++
Sbjct: 524 GLPIRISCG-KRSEEGIVEVKFRKSGESHEVSVDELISF 561


>gi|258516344|ref|YP_003192566.1| prolyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780049|gb|ACV63943.1| prolyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 572

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 158/227 (69%), Gaps = 1/227 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SHKL+LR G I + + G+Y++LPL Q+ L  +  I+REE
Sbjct: 1   MRASQLLIPTLRETPAEAEVISHKLLLRAGYIRRSAAGVYTYLPLAQRVLSKIKRIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR+D YG E+ RL DR+ +    GPTHEE++T + +S
Sbjct: 61  MDRQGGQEILMPIMQPAELWQESGRWDVYGPELFRLKDRHGRDFALGPTHEEIITALVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G   +Y KM+ +
Sbjct: 121 ELSSYKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDADEAGLDITYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKD 226
           Y+RIF R GL+  P+ A+SG IGG  +HEF+VLA++GE   VFC  +
Sbjct: 181 YVRIFQRCGLRFRPVEADSGAIGGSDTHEFMVLAESGEALVVFCQNE 227



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 96/159 (60%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  G KYS  + ATF+  +GK  +  MG YGIG  R +AA IE  +D  GI
Sbjct: 403 AKGIEVGQVFKLGDKYSKSLEATFQDENGKTRHYVMGCYGIGVSRTMAAAIEQHNDLNGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP ++APF + ++ +   DQ   D  E +Y    + G +V  DD  E+ G +F  ADL+
Sbjct: 463 TWPAAIAPFHLVIVPVNVKDQALMDISEVLYRSFLESGVEVVLDDRPERPGVKFKDADLV 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G+PL++ VG KF+ +  +E++ R +G    +  EE++++
Sbjct: 523 GYPLRLTVGKKFLEEGLLELRERRSGKTHFLKEEEILSF 561


>gi|110801651|ref|YP_699687.1| prolyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123341520|sp|Q0SQC0|SYP_CLOPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110682152|gb|ABG85522.1| prolyl-tRNA synthetase [Clostridium perfringens SM101]
          Length = 570

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFC+
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCT 225



 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 109/188 (57%), Gaps = 7/188 (3%)

Query: 259 TSDVHNEKLFDSLPE-NKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D  N  + +  PE  K ++ +RG EVGHIF  GTKYS  M ATF   DGK     MG 
Sbjct: 379 VGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDGKAKPFIMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSK 374
           YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I  N+K  +Q  +   E+IY  L K
Sbjct: 439 YGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATK--AEEIYNELRK 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E +S+EEV
Sbjct: 497 MGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVETLSIEEV 555

Query: 435 INYASHRF 442
            N     F
Sbjct: 556 YNRVRKEF 563


>gi|110799310|ref|YP_697117.1| prolyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168211250|ref|ZP_02636875.1| prolyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|123049576|sp|Q0TMM3|SYP_CLOP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110673957|gb|ABG82944.1| prolyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170710790|gb|EDT22972.1| prolyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 570

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFC+
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCT 225



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 109/188 (57%), Gaps = 7/188 (3%)

Query: 259 TSDVHNEKLFDSLPE-NKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D  N  + +  PE  K ++ +RG EVGHIF  GTKYS  M ATF   DGK     MG 
Sbjct: 379 VGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDGKAKPFIMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSK 374
           YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I  N+K  +Q  +   E+IY  L K
Sbjct: 439 YGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATK--AEEIYNELRK 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E +S+EEV
Sbjct: 497 MGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVETLSIEEV 555

Query: 435 INYASHRF 442
            N     F
Sbjct: 556 YNRVREEF 563


>gi|332286931|ref|YP_004418842.1| prolyl-tRNA synthetase [Pusillimonas sp. T7-7]
 gi|330430884|gb|AEC22218.1| prolyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 577

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 156/218 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKY +  L+E P +AE+ SH+LM R GMI + + GIY+++PLG K L  +  I+R+E
Sbjct: 1   MHASKYHINTLKEAPAEAEVKSHQLMTRAGMIRKAAGGIYTYMPLGLKVLRKIENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIE+ +P +Q A+LWVESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MDQAGAIELLMPVVQPAELWVESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S+R LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD     ++ SY+ M+ +
Sbjct: 121 EIHSWRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEASAQSSYDTMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE
Sbjct: 181 YMRIFQRLGLTFRAVAADTGSIGGSRSHEFQVIADTGE 218



 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 2/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           P A  +D+ N    D  P+  +++  RGIEVGH+F+ G KYS  ++ATF   DGK   +Q
Sbjct: 385 PEATVADLRNVVAGDPDPQGGQLAIQRGIEVGHVFFLGDKYSKALNATFLETDGKPALLQ 444

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARL 372
           MG YGIG  R+ AA IE  HD KGIIWP S+APF++ +  +  H  +  R+  E++Y  L
Sbjct: 445 MGCYGIGISRIAAAAIEQCHDEKGIIWPKSIAPFELVICPMGWHKSETVRNTAEELYQSL 504

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD   + G  FA  +L+G PL++ +G + + +  VEI+ R   I   +++ 
Sbjct: 505 KAQGVEVMLDDRDVRPGIMFADWELIGVPLRITIGDRGLKEGIVEIQARRQEITNKVAVA 564

Query: 433 EVINYA 438
           + ++YA
Sbjct: 565 DALDYA 570


>gi|291277468|ref|YP_003517240.1| prolyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964662|emb|CBG40517.1| prolyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 577

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 160/239 (66%), Gaps = 10/239 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+ENP+DA + SH+ ++R G I Q   GIY++LPLG+K L+ ++ IIREE
Sbjct: 1   MRFSKYFIPTLKENPKDAVLKSHQYLVRGGFIEQIGSGIYNFLPLGKKVLEKISQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM+   +  ++LW +SGRY+ YGKE+LR  DR +   + GPT EE +T++ ++
Sbjct: 61  MNEAGALEMAAGFVVPSELWKQSGRYEKYGKELLRFKDRRENEFVLGPTCEEALTNLAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP  FYQI LKFRDE+RPRFG+MR REF+MKDAYSF    E     +  M  +
Sbjct: 121 LIKSYKSLPLNFYQIHLKFRDEVRPRFGLMRGREFIMKDAYSFHANFEDLDREFENMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF RLGL    + A+SG IGG  S EF+VLAD GE          D  +  EN D+
Sbjct: 181 YCRIFTRLGLDFRVVDADSGAIGGSGSKEFMVLADCGE----------DIIVVCENCDY 229



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 1/152 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           +  + K    +GIEVGHIF  GTKYS  M A F   +GK     MG YGIG  R++ A++
Sbjct: 408 TCCDGKLTHKKGIEVGHIFKLGTKYSQAMQAVFLDQNGKSQAFVMGCYGIGVSRLLPAIL 467

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E   D  G +W  + APFK+ +I     +    +  +++Y  L + G DV  DD  E+ G
Sbjct: 468 EQKSDALGCVWSSTTAPFKVVIIPSNKKNPSEVEFSQRLYENLLQRGVDVLLDDRDERFG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +L+GF   ++VG K +   +VEI  R
Sbjct: 528 FKMKDFELIGFEFAIVVG-KELEGGRVEIFER 558


>gi|295706249|ref|YP_003599324.1| prolyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294803908|gb|ADF40974.1| prolyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 565

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+I SH+L+LR G + Q+S G+YS+LPLG++ L  V  I+REE
Sbjct: 1   MRQSSTLIPTLREVPADADIKSHQLLLRAGYMRQNSSGVYSFLPLGKRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P LQ A+LW ESGR+ SYG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MDRAGSVELLMPALQQAELWQESGRWYSYGPELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+KMF +
Sbjct: 121 EVKSYKRLPLNLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASQESLDEVYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG +GG  +HEF+VL++ GE  +  S
Sbjct: 181 YSRIFERCGLNFRAVIADSGAMGGKDTHEFMVLSEIGEDTIAYS 224



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVGH+F  GT+YS  M AT+   +G+   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 401 AKGIEVGHVFKLGTRYSEAMGATYLDENGRSQPMIMGCYGIGVSRTVAAIAEQFNDENGL 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP++V P+++ +I +   +   R+  EK+Y  L     +V  DD  E+ G +FA +DL+
Sbjct: 461 LWPEAVTPYQVHVIPVNVKNDEQRELGEKLYNELLDNRFEVLLDDRQERAGVKFADSDLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P++V VG K  S+  VE+K R TG   ++S++ +++
Sbjct: 521 GLPVRVTVG-KRASEGIVEVKVRKTGESLEVSVDNLVS 557


>gi|229815406|ref|ZP_04445738.1| hypothetical protein COLINT_02454 [Collinsella intestinalis DSM
           13280]
 gi|229808939|gb|EEP44709.1| hypothetical protein COLINT_02454 [Collinsella intestinalis DSM
           13280]
          Length = 569

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  + P L+E+P +AE+ASH+LMLR GMI + + G+YS+LPL  ++L  +  I+R+E
Sbjct: 1   MKMSNLYAPTLKEDPAEAELASHRLMLRAGMIRKQAAGLYSYLPLAWRSLRKIEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A +W ESGRY+ YG E++R++DR+++  + GPTHEE +TD+ ++
Sbjct: 61  MDAAGAQELLMPIMVDAQVWRESGRYNVYGPELMRISDRHEREFVLGPTHEETVTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF+ T E  + +Y+ M  +
Sbjct: 121 ELKSYKQLPVNLYQIQDKFRDEMRPRFGLMRGREFIMKDGYSFNATQESLQETYDDMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y  I  R GLK++P+ A+SG IGGD S EF+ LAD GE   V+C
Sbjct: 181 YANICERCGLKALPVVADSGQIGGDTSVEFMALADAGEAALVYC 224



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 104/170 (61%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
             ARGIEV  +F  GTKYS  M ATF   +G++    MG YG+G  R +AA +E  HD  
Sbjct: 399 AGARGIEVSQVFQLGTKYSEAMGATFADENGEEKPFLMGCYGVGVSRTLAASVEQHHDEN 458

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP S+AP+++S++ +      C + C+++ A L + G +V  DD   + G +FA  D
Sbjct: 459 GIIWPVSIAPYEVSIMPLDPTIPECAEVCDRLTAELCEAGIEVIVDDRDIRPGVKFADND 518

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           L+GFP Q+++G + + +  VE+K R TG RED++++EV +  +    + R
Sbjct: 519 LMGFPYQIVLGKRGLKNGTVELKDRATGEREDVAIDEVASKVADLVISQR 568


>gi|325915741|ref|ZP_08178043.1| prolyl-tRNA synthetase, family II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538005|gb|EGD09699.1| prolyl-tRNA synthetase, family II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 564

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L+++DR  +   Y PT EE   D  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKISDRKQQEFCYSPTAEEAAADFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 3/153 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGSQYAQALQATVIDESGKPAVLKMGCYGIGISRIVAAAIEQNHDDAGI 461

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +WP  +AP++  + +IN K  D     A + +   L   G D   DD G + G+ FA  +
Sbjct: 462 LWPAPMAPWQVVVCVINPK-QDAQVVAAAQALLDELLAAGLDAALDDRGLRPGAMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LLG P +V+V  + ++    E + R     E++
Sbjct: 521 LLGIPHRVVVSERGLAAGTFEYRARTAEAAENL 553


>gi|126642843|ref|YP_001085827.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 546

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 149/201 (74%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP+G + L  V+AI+REE NR+GA+E+ +P  Q A LW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREEMNRSGAMEVFMPVTQPASLWEESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y+ YG E+LR  DR+D   + GPTHEEV+TD+ R+ +KSY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  YEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARNELKSYKQLPVNFYQIQTKFRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +Y RIF RLGL   P++A++G IGG 
Sbjct: 121 RFGVMRSREFIMKDAYSFHATQESLQETYDVMYDTYSRIFTRLGLDFRPVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKD 226
            SHEF VLA +GE  +  S +
Sbjct: 181 ASHEFHVLAASGEDDIAFSTE 201



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  +     G DGK   V MG YGIG  RVVAA IE ++D KGII
Sbjct: 385 RGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGII 444

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+I+++ + AH      +A E +YA L   G DV  DD  E+ G +F+  +L+
Sbjct: 445 WPQAIAPFEIAIVPMNAHKSPRTLEAAEALYAELQAQGFDVLLDDRNERPGVKFSDLELM 504

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++++G K +     E K R      +++ EE++
Sbjct: 505 GIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELL 541


>gi|18311410|ref|NP_563344.1| prolyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|168206822|ref|ZP_02632827.1| prolyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168214717|ref|ZP_02640342.1| prolyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168217921|ref|ZP_02643546.1| prolyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182626988|ref|ZP_02954718.1| prolyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|81849146|sp|Q8XHQ4|SYP_CLOPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18146094|dbj|BAB82134.1| proline-tRNA ligase [Clostridium perfringens str. 13]
 gi|170661763|gb|EDT14446.1| prolyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170713833|gb|EDT26015.1| prolyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177907658|gb|EDT70282.1| prolyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182380028|gb|EDT77507.1| prolyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 570

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE   VFC+
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCT 225



 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 109/188 (57%), Gaps = 7/188 (3%)

Query: 259 TSDVHNEKLFDSLPE-NKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D  N  + +  PE  K ++ +RG EVGHIF  GTKYS  M ATF   DGK     MG 
Sbjct: 379 VGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDGKAKPFIMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSK 374
           YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I  N+K  +Q  +   E+IY  L K
Sbjct: 439 YGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATK--AEEIYNELRK 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E +S+EEV
Sbjct: 497 MGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVETLSIEEV 555

Query: 435 INYASHRF 442
            N     F
Sbjct: 556 YNRVREEF 563


>gi|289550945|ref|YP_003471849.1| Bacterial type prolyl-tRNA synthetase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658447|ref|ZP_07911319.1| proline--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|289180477|gb|ADC87722.1| Bacterial type prolyl-tRNA synthetase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496776|gb|EFU85099.1| proline--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 566

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MRQSKVFIPTMREVPAEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEILMPVLQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+   P+ A+SG IGG+ +HEF+ L+  GE  +  S +
Sbjct: 181 YGRIFKRVGINVRPVLADSGAIGGNHTHEFMALSKIGEDTIVYSNE 226



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP +V PF + LI +    +  +   + +Y +L+ +  DV +DD  E+ G +F  ADL+
Sbjct: 462 IWPKTVTPFDLHLITVNPKKEEQQSLADNLYEQLNGM-FDVLYDDRKERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P++++VG K  ++  VE+K R TG  ED+ +E++  Y
Sbjct: 521 GLPIRIVVG-KQAAEGIVEVKVRRTGTSEDVHVEQLEQY 558


>gi|323441042|gb|EGA98749.1| prolyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323443911|gb|EGB01522.1| prolyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 567

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 162/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEESLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|148887021|sp|Q0VRL1|SYP_ALCBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 572

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 127/273 (46%), Positives = 174/273 (63%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE
Sbjct: 1   MRTSQYLLATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +
Sbjct: 121 ELHSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S D  D+   + N +  
Sbjct: 181 YCAIFDRLGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFS-DGSDY---AANVELA 236

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSL 271
           + ++  S   +  AP AA    D  N K  + L
Sbjct: 237 EALAPTS---ERPAPGAAIEKVDTPNAKTIEEL 266



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 108/169 (63%), Gaps = 4/169 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + AT    +GK   + MG YGIG  RVVAA IE ++D +GII
Sbjct: 405 RGIEVGHIFQLGTKYSEALGATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGII 464

Query: 340 WPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           WP+++APF+++L  +NIK   +  R+  EK+YA L+ +G +V +DD   E++G + A  +
Sbjct: 465 WPEAIAPFQVALVPVNIKKSPR-ERELAEKLYAELTAMGIEVLFDDREKERLGVKLADTE 523

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           LLG P ++++  + + +  +E K R    + +++++E++ +   +   N
Sbjct: 524 LLGIPHRIVIAERGMDNGVLEYKGRRDADKTEVAMDEIVAFLKEKMGMN 572


>gi|310641908|ref|YP_003946666.1| prolyl-tRNA synthetase 1 [Paenibacillus polymyxa SC2]
 gi|309246858|gb|ADO56425.1| Prolyl-tRNA synthetase 1 [Paenibacillus polymyxa SC2]
          Length = 581

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 159/226 (70%), Gaps = 2/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  L  L+E P +AE+ SH+LMLR G I Q + G+Y+++PLG++ L  V  I+R+E
Sbjct: 1   MRQSQLLLTTLREAPAEAEVISHQLMLRAGFIRQLAAGMYTYMPLGRRVLRKVEQIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ  +LW ESGRYD YG E++RL DR+D+    GPTHEEV+T + R+
Sbjct: 61  MDRAGAGELLMPVLQPTELWQESGRYDVYGPELMRLQDRHDREFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++RSREFLMKDAYSFD    G  H+Y  MF +
Sbjct: 121 EVNSYRKLPVTLYQIQTKFRDERRPRFGLLRSREFLMKDAYSFDANWAGLDHTYWTMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGE-TQVFCS 224
           Y RIF R  L    + A++G IGG+  +HEF+ LA+ GE T V C+
Sbjct: 181 YQRIFTRCSLNFRAVEADAGAIGGEGETHEFMALAEIGEDTIVACT 226



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 1/162 (0%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E K    RGIE+GH+F  GTKYS  + ATF  A G D  + MG YGIG  R+++A++E +
Sbjct: 411 EGKLELHRGIEIGHVFKLGTKYSEKLGATFLDASGTDQVMIMGCYGIGVSRILSAIVEQN 470

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD  G+IWP ++APF++ +I I   D++     E +Y++L   G +V  DD  E+ G +F
Sbjct: 471 HDQNGMIWPHALAPFQVHIIPISVKDRLQMQIAEDLYSQLQDRGVEVLLDDREERPGVKF 530

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             +DL+G P +++VG K     KVE   R +  +E + + +V
Sbjct: 531 KDSDLVGIPARIVVG-KDAEHGKVEFVERRSSHKESIHIHDV 571


>gi|147677598|ref|YP_001211813.1| prolyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|189083504|sp|A5D2U6|SYP_PELTS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146273695|dbj|BAF59444.1| prolyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 570

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/231 (48%), Positives = 159/231 (68%), Gaps = 1/231 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P L+E P +AE+ SH+L+LR G I + + G+Y++LPL  + +  +  I+REE
Sbjct: 1   MRASELFSPTLREVPAEAEVVSHQLLLRAGFIRRAAAGVYTYLPLAMRVIKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A++W ESGR+D YG E+ RL DR+D+    GPTHEE++T + R 
Sbjct: 61  MDRQGGQELLMPIIQPAEIWQESGRWDVYGPELFRLKDRHDRDFALGPTHEEIITVLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   EG   SY KM+ +
Sbjct: 121 EVSSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEEGLNVSYMKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDF 230
           Y R+F R GL   P+ A+SG IGG  +HEF+VLA++GE T ++C  +  D+
Sbjct: 181 YTRVFQRCGLHFRPVEADSGAIGGSDTHEFMVLAESGEATVLYCDGNGCDY 231



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 88/146 (60%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG IF  G KYS  + A++    G+   V MG YGIG  R +AA IE +HD  GI
Sbjct: 404 AKGIEVGQIFKLGDKYSRALGASYLDEKGQSRPVIMGCYGIGITRTMAAAIEQNHDRDGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+APF + +I +   D       E++Y+RL   G +   DD  E+ G +F  ADL+
Sbjct: 464 IWPASIAPFHVVVIPVNVKDGGQYAMAEEVYSRLWAAGIEAVLDDRTERAGVKFKDADLI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G+PL++ +G+K V +  VEI+ R  G
Sbjct: 524 GYPLRITIGAKAVEEKLVEIRIRKNG 549


>gi|330896119|gb|EGH28340.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 571

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + +  +Y+WLP G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASVLYTWLPRGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFS 224



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D +APF+I+L+ ++      R+A +K+YA L
Sbjct: 438 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDILAPFQIALVPLRYETDAVREATDKLYADL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 557

Query: 431 LEEVINY 437
           + +V+++
Sbjct: 558 VADVLSF 564


>gi|77457424|ref|YP_346929.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|114152233|sp|Q3KH16|SYP_PSEPF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77381427|gb|ABA72940.1| proline tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 571

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 188/303 (62%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+ +P+ Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRIKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD+YSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDSYSFHADQASLQVTYDRMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 181 YCNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V + T+  A + ++   +L D+ P+ K ++A             K++LP+  
Sbjct: 231 ANIEKAEAVPRETSRAAPSEEL---RLVDT-PDTKTIAA----------LVEKFNLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TIK 279



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 112/192 (58%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAMKCEVLGENGKPVTL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +MG YGIG  RVVAA IE ++D  GIIW D++APF+I+L+ ++   ++ R+A +K+YA L
Sbjct: 438 EMGCYGIGVSRVVAAAIEQNNDENGIIWSDALAPFQIALVPLRYETELVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R  G  + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTEGQAQALP 557

Query: 431 LEEVINYASHRF 442
           + +V+++   R 
Sbjct: 558 VADVLSFLQARI 569


>gi|254427770|ref|ZP_05041477.1| prolyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196193939|gb|EDX88898.1| prolyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 572

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 176/273 (64%), Gaps = 9/273 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE
Sbjct: 1   MRTSQYLLATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +
Sbjct: 121 ELHSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S D  D+   + N +  
Sbjct: 181 YCAIFDRLGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFS-DGSDY---AANVELA 236

Query: 241 DIISLNSIVEQWTAPYAA--TSDVHNEKLFDSL 271
           +  +L   +E+  AP AA  T D  N +  + L
Sbjct: 237 E--ALAPAIER-PAPGAAMETVDTPNARTIEEL 266



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 4/169 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + AT    +GK   + MG YGIG  RVVAA IE ++D +GII
Sbjct: 405 RGIEVGHIFQLGTKYSEALGATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGII 464

Query: 340 WPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           WP+++APF+++LI  NIK   +  R+  E +YA L+  G +V +DD   E++G + A ++
Sbjct: 465 WPEAIAPFQVALIPVNIKKSPR-ERELAETLYAELTAAGIEVIFDDREKERLGVKLADSE 523

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           L+G P ++++  + + +  +E K R    + ++ ++ V+ +   +   N
Sbjct: 524 LIGIPHRIVIAERGMDNGVLEYKGRGDADKTEVPVDVVVAFIKGKLGTN 572


>gi|319788986|ref|YP_004150619.1| prolyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317113488|gb|ADU95978.1| prolyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 568

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 161/226 (71%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P  +E+P DAEI SHKL++R G I + + G+Y  LPLG + +  +  +IR+E
Sbjct: 1   MRFSRAFIPTKKESPADAEIPSHKLLVRAGFIRKVASGLYDILPLGARVIRKIEQVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P +  A+LW ESGR+D YGKEM++  DR+++    GPT EE++TD+ R 
Sbjct: 61  MERAGAQEVILPIMHPAELWQESGRWDVYGKEMIKFKDRHERDYALGPTAEEMITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFRDE+RPRFG+MRSREF+MKDAYSF  + E ++  Y  MF +
Sbjct: 121 EVKSYKELPLNLYQIGRKFRDEIRPRFGLMRSREFIMKDAYSFHASDEDAEREYWNMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF RLGL+   + A++G IGG  SHEF+V+ADTGE++ V+C +
Sbjct: 181 YSRIFKRLGLEFKAVEADTGEIGGSFSHEFMVIADTGESKLVYCPE 226



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 98/160 (61%), Gaps = 1/160 (0%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RGIEVGHIF  GTKYS  M ATF    G +  + MG YGIG  RV+AA +E  HD  
Sbjct: 401 VEKRGIEVGHIFKLGTKYSEAMGATFVDEQGNEKPMVMGCYGIGVTRVMAAAVEQGHDEN 460

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP  +APF++ +I +    +   +A E++Y+ L + G DV  DD   + G +F  AD
Sbjct: 461 GIIWPVEIAPFEVIVIPVNVKKEEIVEAAERVYSELMEAGFDVLLDDRNARPGFKFKDAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P QVIVG K  S+  VE+K R +G R ++ ++ V+ 
Sbjct: 521 LIGIPYQVIVGKK-ASEGVVELKIRRSGERLELPVDGVVG 559


>gi|323489584|ref|ZP_08094811.1| prolyl-tRNA synthetase 1 [Planococcus donghaensis MPA1U2]
 gi|323396715|gb|EGA89534.1| prolyl-tRNA synthetase 1 [Planococcus donghaensis MPA1U2]
          Length = 567

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+++  F+P L+E P DAE+ SH+L+LR G I Q++ GIYS+LPLG++ L  V  +IREE
Sbjct: 1   MKQTATFIPTLRETPADAEVRSHQLLLRAGFIRQNTSGIYSFLPLGKRVLQKVETVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                ++E+ +P LQ A+LW ESGR+ SYG E++RL DRND+    G THEEV+T + R 
Sbjct: 61  MEAANSVEIFMPALQQAELWQESGRWYSYGDELMRLKDRNDREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   +QIQ KFRDE RPRFG++R REFLMKDAYSF  T E    +Y+ M  +
Sbjct: 121 EIKSYKKLPLNLFQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHATTESLDETYDVMMQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    + A+SG IGG  +HEF+VL++ GE  +  S
Sbjct: 181 YTNIFTRLGLNFRAVIADSGAIGGKDNHEFMVLSEIGEDTIAYS 224



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 96/164 (58%), Gaps = 1/164 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVGHIF  GT YS+P+  TF    GK     MG YGIG  RV+AAV E   D  G 
Sbjct: 403 AKGIEVGHIFKLGTTYSIPLKGTFLNDQGKSMPYIMGCYGIGVSRVLAAVAEQFQDENGF 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WPD VAP+++ L+ +   D   R+  E++YA L +   +V  DD  E+ G +FA ADL+
Sbjct: 463 TWPDVVAPYEVHLVPVNVKDDTQRELGEELYALLKENRYEVLLDDRKERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++ +G K  ++  +E+K R TG   + + +EV+      F
Sbjct: 523 GLPIRITIGKK-AAEGILEVKIRRTGETFEWTRDEVLEKIQQFF 565


>gi|290968110|ref|ZP_06559655.1| proline--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781785|gb|EFD94368.1| proline--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 575

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 187/295 (63%), Gaps = 22/295 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+++P +AE+ASHK ML+ GMI +++ G YS+LPL ++++  +  IIREE
Sbjct: 1   MLASKLYCPTLRDDPAEAEVASHKYMLKAGMIRKNASGFYSFLPLARRSVLKIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+ +P +Q A++W ESGR+D YGKEM +LADR+       PTHEE++T + R+
Sbjct: 61  MDKTGAQEIMMPIVQPAEIWQESGRWDVYGKEMFKLADRHGNEYCLAPTHEELITTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE+RPRFG+MRSREF+M+D+YSFD   EG + SY  M+ +
Sbjct: 121 ELRSYKQLPVNLYQIQNKYRDEIRPRFGLMRSREFVMQDSYSFDTDQEGLEKSYQAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK--------DFMDFP 231
           Y RIF R GL+   + A+SG IGG  SHEF+ LA +GE   V C++             P
Sbjct: 181 YSRIFTRCGLQYRTVLADSGQIGGKHSHEFMALAASGEADIVTCTQCAYAADVEQATPNP 240

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEV 284
           +P+       I       E++  P+ AT     E+L  +  +P  K + A  +++
Sbjct: 241 LPAAAEPLQAI-------EKFATPHCATI----EELVQAAGVPAEKTIKAVALDI 284



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 94/157 (59%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG +F  GTKYS  + A+F   DGK     MG YGIG  R +AA IE  HD +GI+
Sbjct: 405 RGIEVGQVFQLGTKYSEALQASFLDKDGKAKPFVMGCYGIGVTRTMAAAIEQYHDERGIL 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++AP++  ++ +   D+V   A  ++Y +LS    ++  DD  E+ G +F  ADL+G
Sbjct: 465 WPVAIAPYEAVILPLNMKDEVMVTAARELYTQLSADSSEIVLDDRPERAGVKFNDADLIG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +P+Q++VG    +   VEIK R TG +E + +   + 
Sbjct: 525 YPVQIVVGKDTKTKGTVEIKVRRTGAKEAVPVRTAVG 561


>gi|330685674|gb|EGG97315.1| proline--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 567

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MEKVDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNE 226



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E  HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSETMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQHHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF + LI I    +  R+   ++Y +L     DV +DD  E+ G +F  ADL+
Sbjct: 462 IWPKSVTPFDLHLITINPKKEDQRELGNQLYDQLMN-NYDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P++V+VG K   +  VE+K R TG  E++ ++++ NY
Sbjct: 521 GLPIRVVVG-KRAEEGIVEVKQRSTGESEEIHIDDLENY 558


>gi|294500903|ref|YP_003564603.1| prolyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294350840|gb|ADE71169.1| prolyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 565

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+I SH+L+LR G + Q++ G+YS+LPLG++ L  V  I+REE
Sbjct: 1   MRQSSTLIPTLREVPADADIKSHQLLLRAGYMRQNASGVYSFLPLGKRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P LQ A+LW ESGR+ SYG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MDRAGSVELLMPALQQAELWQESGRWYSYGPELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+KMF +
Sbjct: 121 EVKSYKRLPLNLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASQESLDEVYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG +GG  +HEF+VL++ GE  +  S
Sbjct: 181 YSRIFERCGLNFRAVIADSGAMGGKDTHEFMVLSEIGEDTIAYS 224



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVGH+F  GT+YS  M AT+   +G++  + MG YGIG  R VAA+ E  +D  G+
Sbjct: 401 AKGIEVGHVFKLGTRYSEAMGATYLDENGRNQPMIMGCYGIGVSRTVAAIAEQFNDENGL 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP++V P+++ +I +   +   R+  EK+Y  L     +V  DD  E+ G +FA +DL+
Sbjct: 461 LWPEAVTPYQVHVIPVNVKNDEQRELGEKLYNELLDNRFEVLLDDRQERAGVKFADSDLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P++V VG K  S+  VE+K R TG   ++S++ +++
Sbjct: 521 GLPVRVTVG-KRASEGIVEVKVRKTGESLEVSVDNLVS 557


>gi|239636259|ref|ZP_04677261.1| prolyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239597614|gb|EEQ80109.1| prolyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 567

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MEKVDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNE 226



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E  HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQHHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF + LI I    +  R   +++Y +L     DV +DD  E+ G +F  ADL+
Sbjct: 462 IWPKSVTPFDLHLITINPKKEEQRKLGDQLYDQLMN-NYDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G PL+V+VG K   +  VE+K R TG  E++ ++++ NY
Sbjct: 521 GLPLRVVVG-KRAEEGIVEVKQRSTGESEEIHIDDLENY 558


>gi|270002317|gb|EEZ98764.1| hypothetical protein TcasGA2_TC001328 [Tribolium castaneum]
          Length = 351

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 207/362 (57%), Gaps = 42/362 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASH-------KLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R S+ F P+    P++AE+  H       +LML  G+I Q S G + +LPLG K+L+ + 
Sbjct: 8   RLSRLFQPV-SVVPKNAEVKRHDITSKSQRLMLELGIIRQASPGCFHFLPLGVKSLEKLT 66

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++ EE  + G  ++  PTL +A LW ++GR ++   E+ ++ DR+D++ I  PTHEE  
Sbjct: 67  RLVDEEMKKIGGQKIIFPTLTNAKLWEKTGRLETVSSELFQIKDRHDQSYILSPTHEEAA 126

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +++  S    SY++LP   YQI  K+RDE++PRFG+MR ++FLMKD YSFD   E +KH+
Sbjct: 127 SNLLASLAPISYKHLPLKLYQITSKYRDEMKPRFGLMRGKQFLMKDMYSFDTDLETAKHT 186

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+++  SY RIF R+G+  + +   SG +GG+LSHE+   AD GE               
Sbjct: 187 YDEICKSYDRIFRRIGIDFVKVVGCSGHMGGELSHEYHYKADVGE--------------- 231

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR---GIEVGHIFYF 290
                 D I++ N         Y+A ++V  E   +  P     S +   GIEVGH F  
Sbjct: 232 ------DKILTCNK------CNYSANTEVSGE---EKCPNCGNTSVKIHLGIEVGHTFLL 276

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS P++ATF    GK   +QMGSYG+G  R++AAVIE     + I WP  ++P+ + 
Sbjct: 277 GEKYSKPLNATFLNNHGKPDVLQMGSYGLGLSRILAAVIEVMSSEQEIRWPQILSPYSVI 336

Query: 351 LI 352
           ++
Sbjct: 337 IL 338


>gi|296122745|ref|YP_003630523.1| prolyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015085|gb|ADG68324.1| prolyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 590

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 158/229 (68%), Gaps = 4/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P L+ENP DAEI SH+LMLR G + Q   G Y++LPLG +++  + AIIREE
Sbjct: 1   MRWSQSFIPTLKENPSDAEIPSHQLMLRAGYVRQLMAGAYTYLPLGWRSIRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY---GPTHEEVMTDI 117
            + TGA+EM +P LQ  DL+  +GR +++G  ++    R     ++   GPTHEEV+TD+
Sbjct: 61  MDATGALEMLMPALQPIDLFERTGRKEAFGNVLINFNIRRQNHQVHLALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              HI SYR LP T YQIQ KFR+E RPRFGV+R+ EF+MKDAYSF  + E    +Y K+
Sbjct: 121 MSRHISSYRQLPMTVYQIQTKFRNEERPRFGVLRTSEFIMKDAYSFHSSVESLSETYQKI 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           + +Y RIF R GL+ +P+ AESGPIGGD SHEF+  A  GE Q VFC K
Sbjct: 181 YRAYCRIFARCGLEYLPVEAESGPIGGDASHEFMAPAANGEDQIVFCRK 229



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D  P  E       GIEVGH+F  GTKYS+ ++AT+         + MG 
Sbjct: 392 TFDLRNAAAGDPSPRGEGTLELVHGIEVGHVFKLGTKYSVSLNATYDDEAATRQPLIMGC 451

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R++A++ E+  D  G++ P S+AP+ + +  I  +D    +   ++   L+  G
Sbjct: 452 YGIGVNRILASMAETKFDDNGLVLPLSIAPYSVVISTIGVNDPEVDEVVNQLEKELTAAG 511

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D+  DD  ++ G +F  ADL+G PL+V++G K + + +VE+K R
Sbjct: 512 VDLLIDDRDQRPGVKFKDADLIGIPLRVVIGGKGLKEGQVELKWR 556


>gi|330839271|ref|YP_004413851.1| Prolyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329747035|gb|AEC00392.1| Prolyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 568

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DAEI SH+LMLR GMI + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MLTSKLYAPTLREVPSDAEITSHRLMLRAGMIRKAAGGVYTYLPLAWRTIKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ESGR+  +G+EM RL D + +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQELCMPIMQPAEIWQESGRWSVFGQEMFRLKDCHGREFCLGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE+RPRFG+MRSREF+MKD YSFD    G+  SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIQNKYRDEIRPRFGLMRSREFIMKDLYSFDKDEAGADISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  +F R GLK  P+ A++G IGG+ +HEF VLA  GE+++ C 
Sbjct: 181 YTNVFTRCGLKFRPVEADAGAIGGNHTHEFTVLAAAGESEIACC 224



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE G +F  GTKYS  + ATF   +GK+  + MG YGIG  R +AA IE  +D  GII
Sbjct: 403 RGIEAGQVFKLGTKYSEALGATFLDENGKEKALFMGCYGIGVGRTMAAAIEQHNDEHGII 462

Query: 340 WPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP ++AP+++ +  +N KA +Q+     E++Y  L   G D   DD  ++ G +F  ADL
Sbjct: 463 WPRAIAPYEVVVVPVNAKASEQLA--LAEEVYEMLLAAGVDAILDDRKDRAGVKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G+PL++ +G K + + K+E+K R +G   D +  E +
Sbjct: 521 IGYPLRITIGPKALEEGKIELKVRRSGESCDCTKAECL 558


>gi|118602380|ref|YP_903595.1| prolyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|152016598|sp|A1AW17|SYP_RUTMC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118567319|gb|ABL02124.1| prolyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 559

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K  +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V  IIR+E
Sbjct: 1   MKTTKLLIPTQKEVPNDAQIISHQLMIRAGLISKLASGLYSYLPMGVRVLHKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW  SGR+D YG E+LR  DR+ +    GPTHEEV+T +   
Sbjct: 61  MNKSGAQEVFMPVVQPAELWKTSGRWDKYGTELLRFTDRHQREFCLGPTHEEVITHLAAQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L     + +Y+ M+ +
Sbjct: 121 YLRSYKQLPMNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLDQYSLQQTYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  IF RL L    + A+SG IGGD SHEF VLA++GE  + C  D  ++    E   F
Sbjct: 181 YCNIFDRLSLDYHAVLADSGSIGGDASHEFHVLAESGEDTI-CFSDESNYAANIEKVSF 238



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 1/171 (0%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K +  RGIEVGHIF  GTKYS  M     G  GK     MG YGIG  R++AA IE +
Sbjct: 389 KGKLIIKRGIEVGHIFQLGTKYSSAMKVNVIGESGKAITTTMGCYGIGVTRIIAASIEQN 448

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +D KGII+P ++APF++ ++ I  +     +   +K+Y +    G +V  DD  E+ G  
Sbjct: 449 YDDKGIIFPQAIAPFQVVIVPINYNKSTRVKALSDKLYQQFIGAGIEVLLDDRKERAGIM 508

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FA ++LLG P ++++      +  VE K R    +  M  ++ +++   + 
Sbjct: 509 FADSELLGIPHRMVISDTHADNGNVEYKARDKIDKMQMKFDDALSFIQFKL 559


>gi|89098602|ref|ZP_01171484.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89086564|gb|EAR65683.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 568

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/276 (44%), Positives = 175/276 (63%), Gaps = 15/276 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+L+LR G I Q++ G+YS+LP+ +K L  + AI+REE
Sbjct: 1   MKQSMTLIPTLREVPADAEVRSHQLLLRAGFIRQNAAGVYSYLPMARKVLQKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ A+LW ESGR+ +YG E++RL DRND+    G THEEV+T + R 
Sbjct: 61  MDDAGASELLMPALQQAELWQESGRWYTYGPELMRLKDRNDREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+++F +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEQRPRFGILRGREFIMKDAYSFHSSQESLDEVYSRLFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGE----------DTIAYSDASDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
             + +  ++  +     A SD   ++L     EN+R
Sbjct: 231 ANVEMAPVINAY-----AKSDAAPKELEKVQTENQR 261



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 1/168 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVGH+F  GT+YS  M+A +   +G+   + MG YGIG  R++AA+ E  +D KG 
Sbjct: 402 AKGIEVGHVFKLGTRYSEAMNAVYLDENGRTQPMIMGCYGIGVSRILAAIAEQYNDDKGF 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  +APFK+ +I +   D+      E++Y  L   G +V +DD  E+ G +FA ADL+
Sbjct: 462 IWPADLAPFKVHVIAVNMKDEAQAGLGEELYKELRGNGYEVLFDDRPERAGVKFADADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P+++  G K  S+  VE+K R TG  E++  ++++ + +   ++ +
Sbjct: 522 GLPVRITAGKK-ASEGIVEVKVRSTGEMEEIHKDQLLEHIASILTSQK 568


>gi|304315915|ref|YP_003851060.1| prolyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777417|gb|ADL67976.1| prolyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 570

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  M+ + + G+Y +LPLG++ L  +  I+REE
Sbjct: 1   MRLSQLLIPTLREVPAEAEIPSHTLMLKAAMMRKLASGVYIYLPLGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +  A+L  ESGR+D +G EM +L DRND+    GPTHEEV TD+ R+
Sbjct: 61  MDRAGAQEVLMPAIIPAELLKESGRWDVFGPEMFKLKDRNDREFCLGPTHEEVFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD+  +G   S++KM+ +
Sbjct: 121 EVKSYRQLPLTIYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDVDWDGLDASFDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK   + A+SG +GG  S EF+V +  GE  + +C
Sbjct: 181 YCRIFDRCGLKYTVVEADSGAMGGKDSKEFMVTSSVGEAVIAYC 224



 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 98/166 (59%), Gaps = 1/166 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R+ AA IE +HD KGII
Sbjct: 405 RGIEVGHIFKLGTKYSDALGANYIDENGNEKPMIMGCYGIGLNRIAAAAIEQNHDDKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+AP+   ++ +   +   R+  EKIY  LSK G +   DD   + G +F  ADLLG
Sbjct: 465 WPMSIAPYHAIVVPVNVSNDAQRNLAEKIYDELSKAGIETLIDDRDLRAGVKFNDADLLG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P+++ VG K  SD+ VE+K R      +++ +EV+N       N+
Sbjct: 525 IPIRITVGKK-ASDNIVELKLRRDENSIELNYDEVVNKVKELIINS 569


>gi|326318382|ref|YP_004236054.1| prolyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375218|gb|ADX47487.1| prolyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 581

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 157/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFVSTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEFWQETGRFDKMGPELLRIRDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C +
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQ 226



 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 3/166 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   A  RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG 
Sbjct: 393 VADLRNVVAGDPSPDGKGALAIERGIEVGHVFYLGTKYSRAMNATFLGEDGKPAFFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  R A EK++A L   
Sbjct: 453 YGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVVCPIGMDRSEEVRAAAEKLHADLLAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + +VE +HR
Sbjct: 513 GVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGLKEGQVEYQHR 558


>gi|262276504|ref|ZP_06054313.1| prolyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262220312|gb|EEY71628.1| prolyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 571

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 149/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLQKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  INNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF M DAYSFDL  EG + SY  M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRAREFSMMDAYSFDLDKEGLQKSYEAMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y   F R+GL   P+ A++G IGG  SHEF VLA++GE
Sbjct: 181 YCAAFDRMGLDYRPVLADTGAIGGSASHEFHVLANSGE 218



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 103/165 (62%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M     GADGK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMGCGVLGADGKNVILEMGCYGIGVSRVVAAAIEQNHDENGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF ++++ +  H  +  +DA EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFTVAIVPMNMHKSERVKDAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E KHR  G +  + +E ++ +   + +
Sbjct: 527 GIPHTIIIGERSMDNGVFEYKHRRNGEKVPVDMENMVEFLKAKLA 571


>gi|226313026|ref|YP_002772920.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|254782888|sp|C0ZF57|SYP_BREBN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226095974|dbj|BAH44416.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 581

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/282 (43%), Positives = 178/282 (63%), Gaps = 4/282 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAEIASHKL+LR GM  Q + GIY++LPL  ++L  + AI+REE
Sbjct: 1   MKQSQMLIPTLREVPSDAEIASHKLLLRAGMARQLASGIYTYLPLALRSLHKIQAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q A+LW ++GR+D YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNNAGGQELLMPAMQPAELWHQTGRWDVYGPELVRLRDRHDRPFALGPTHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG++R REF+MKDAYSFD + +G   ++  M+ +
Sbjct: 121 EINSYKKLPINLYQIQTKFRDEVRPRFGLIRCREFIMKDAYSFDTSQDGLDRNFQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A++G IGG  ++EF+ L D GE  +  S++  DF   + N +  
Sbjct: 181 YTNIFTRVGLNFRAVEADAGAIGGKGTYEFMALCDIGEDTIAYSEEG-DF---AANLEKA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           +++   S      AP          K  D L +  ++ A+ I
Sbjct: 237 EVVYKPSAKPATEAPAREKLHTPGIKTIDQLVQALQIEAKQI 278



 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 130/241 (53%), Gaps = 17/241 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+G D   +  ++AD         +D  D  + +  TD+     L  +V       +  
Sbjct: 335 GPVGID-PEKVDIIADN------FVQDVYDGVVGANETDY----HLTHVVAGRDFTVSKY 383

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P    V   ARG+EVGH+F  GTKYS  M AT+   +G+   + MG Y
Sbjct: 384 ADLRNITEGDECPRTGGVIKFARGVEVGHVFKLGTKYSTAMGATYLDENGRSQPMIMGCY 443

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKV 375
           GIG  R +AAVIE ++D  GIIWP SVAPF + +I  N+K  +Q  R A E+I   L K 
Sbjct: 444 GIGVSRTIAAVIEQNNDENGIIWPVSVAPFHVHVIPVNVKVEEQ--RQASEQITEALRKA 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G +F  ADL+G PL++ V  K   +  VE++ R  G   D+ L++++
Sbjct: 502 GIEVLFDDRPERAGVKFKDADLIGLPLRITVSDKAAQEGTVEVRIRKNGETHDVKLDQLV 561

Query: 436 N 436
           +
Sbjct: 562 D 562


>gi|20808685|ref|NP_623856.1| prolyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|81848077|sp|Q8R7S9|SYP_THETN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|20517322|gb|AAM25460.1| Prolyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 573

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P DAEI SH LML+ G++ + + GIY +LPLG++ L  V  I+REE
Sbjct: 1   MRLSQLLMPTLREVPADAEIPSHVLMLKAGLMRKLAAGIYVYLPLGKRVLKKVEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L+ E+GR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDREGSQEVLMSALIPAELFKETGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD   EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDADWEGLDESFNKMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK + + A+ G +GG  S EF+V++  GE  + +C
Sbjct: 181 YCRIFDRCGLKYLVVEADPGAMGGRDSKEFMVISSVGEAVIAYC 224



 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 89/141 (63%), Gaps = 1/141 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  GTKYS  + AT+   +G +  + MG YGIG  R VAA+IE  HD KGI
Sbjct: 403 ARGIEVGHIFKLGTKYSEALGATYTDEEGNEKPIVMGCYGIGINRTVAAIIEQHHDEKGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+ + ++ +   D+  +   EKIY +L +   +V  DD   + G +F  ADL+
Sbjct: 463 IWPMSVAPYHVIVVPVNVSDEEQKQIAEKIYNKLLEEKLEVLIDDRDVRAGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIK 419
           G P++V +G K V +  VEIK
Sbjct: 523 GIPVRVTIGKK-VKEGIVEIK 542


>gi|319401447|gb|EFV89657.1| prolyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 567

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHFDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S +
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNE 226



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF I LI I       R   +++Y +L     DV +DD  E+ G +F  +DL+
Sbjct: 462 IWPKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMD-SYDVLYDDRKERAGVKFNDSDLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P++V+VG K   +  VE+K R+ G+ E++ ++E+  Y    F N
Sbjct: 521 GLPVRVVVG-KRAEEGIVEVKQRINGLSEEVQVDELETYLQELFKN 565


>gi|82750864|ref|YP_416605.1| prolyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|114152256|sp|Q2YXK5|SYP_STAAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|82656395|emb|CAI80814.1| prolyl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 567

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGTELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ + +++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIADLMTVITNKYDN 565


>gi|314933442|ref|ZP_07840807.1| proline--tRNA ligase [Staphylococcus caprae C87]
 gi|313653592|gb|EFS17349.1| proline--tRNA ligase [Staphylococcus caprae C87]
          Length = 567

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEESLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNE 226



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF + LI I       R+  +++YA+L+    DV +DD  E+ G +F  ADL+
Sbjct: 462 IWPKSVTPFDLHLITINPKKDDQRELGDQLYAQLND-KFDVLYDDRKERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G PL+V+VG K   +  VE+K RL G  E++ + ++ NY
Sbjct: 521 GLPLRVVVG-KRAEEGVVEVKQRLNGESEEIHVNDLENY 558


>gi|40063052|gb|AAR37908.1| prolyl-tRNA synthetase [uncultured marine bacterium 560]
          Length = 567

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/230 (50%), Positives = 161/230 (70%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +P ++E P DA+I SH+LM+R G++ + + G+YS+LP+G + +  V  IIREE
Sbjct: 1   MKSSDLLIPTIKEAPNDAQIISHQLMIRAGLVSKLASGLYSYLPIGLRVIQKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++ A E+ +P  Q A+LW ESGR++ YG E+LR  DR+++    GPTHEEV+T+I + 
Sbjct: 61  MNKSLAQELLMPVAQPAELWQESGRWEEYGPELLRFKDRHERDFCLGPTHEEVITNIAKQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 YLRSYKQLPINFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHIDEASLGETYQVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  IF RLGL+   + A+SG IGGD SHEF VLAD+GE  + C  +  D+
Sbjct: 181 YCNIFDRLGLEYKVVLADSGAIGGDSSHEFHVLADSGEDAI-CFSNKSDY 229



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 1/143 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M+A   G DGK   + MG YGIG  R+VAA IE +HD KGII
Sbjct: 403 RGIEVGHIFQLGTKYSDAMNANVIGEDGKAVNMNMGCYGIGVTRIVAASIEQNHDDKGII 462

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +P+S+APF++ ++ I  +     R   +++Y +    G +V  D+  E+ G  FA ++LL
Sbjct: 463 FPESIAPFQLVIVPINYNKSSRVRKLADELYEQFLSQGVEVLLDNRKERPGIMFADSELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P ++++         +E K R
Sbjct: 523 GIPHRLVISDTHADSGNIEYKSR 545


>gi|229061422|ref|ZP_04198767.1| Prolyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228717845|gb|EEL69493.1| Prolyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 566

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/253 (47%), Positives = 164/253 (64%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  L    + A+SG +GG  +HEF+VL+D GE          D    S+ +D+ 
Sbjct: 181 YSNIFARCSLNFRAVIADSGAMGGKDTHEFMVLSDVGE----------DTIAYSDTSDYA 230

Query: 241 DIISLNSIVEQWT 253
             I +  +V  +T
Sbjct: 231 ANIEMAPVVATYT 243



 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 98/162 (60%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 403 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFNDENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + +I +       R+    IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 463 VWPKSVAPFHVHVIPVNMKSDAQREMGGNIYNSLQEQGYEVLLDDRAERAGVKFADADLF 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 523 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 563


>gi|330807862|ref|YP_004352324.1| proline--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375970|gb|AEA67320.1| Proline--tRNA ligase (proline tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 571

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/303 (42%), Positives = 186/303 (61%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+ +P  Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGSLEVLMPGTQPAELWQESGRWEEYGPELLRIKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD+YSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDSYSFHADLASLQITYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S            +D+ 
Sbjct: 181 YCNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN----------GSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I     V + T+  A T ++   +L D+   N +  A+ +E          Y+LP+  
Sbjct: 231 ANIEKAEAVPRETSRAAPTEEL---RLVDT--PNAKTIAQLVE---------GYNLPIER 276

Query: 301 TFK 303
           T K
Sbjct: 277 TIK 279



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 111/192 (57%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M     G +GK   +
Sbjct: 378 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAMKCEVLGENGKPVTL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +MG YGIG  RVVAA IE ++D KGIIW D++APF+I+L+ ++    + R+A +K+YA L
Sbjct: 438 EMGCYGIGVSRVVAAAIEQNNDEKGIIWSDTLAPFQIALVPLRYETDLVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + + 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTEAEPQALP 557

Query: 431 LEEVINYASHRF 442
           + +V+++   R 
Sbjct: 558 VADVLSFLQARI 569


>gi|167036776|ref|YP_001664354.1| prolyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115198|ref|YP_004185357.1| prolyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|226701349|sp|B0KCH5|SYP_THEP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166855610|gb|ABY94018.1| prolyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928289|gb|ADV78974.1| prolyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 570

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDMDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  + +C
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYC 224



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  HD KGII
Sbjct: 405 RGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHHDEKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F  ADLLG
Sbjct: 465 WPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFNDADLLG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 525 IPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVV 559


>gi|139948347|ref|NP_758476.2| probable prolyl-tRNA synthetase, mitochondrial isoform 1 [Mus
           musculus]
 gi|123239922|emb|CAM27480.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 475

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/412 (35%), Positives = 216/412 (52%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    D    S +LML+ G+I   S G Y  +P   +A++ +  +I +E    G  +++
Sbjct: 59  LEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKIN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ +Y  +  +Y R+F RLG
Sbjct: 179 LLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ +  RA+ G IGG +SHEF +  D GE + V C          S NT+  D+     I
Sbjct: 239 LQWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHF-----SANTEILDLS--QKI 291

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                 P   T                    +GIEVGH FY  TKYS   +A F  A G+
Sbjct: 292 CPDCQGPLTET--------------------KGIEVGHTFYLSTKYSSIFNALFTNAHGE 331

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       I WP  +AP+++ +I  K  + +    +  E
Sbjct: 332 SLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVE 391

Query: 367 KIY----ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           K+Y      + ++  +V  DD     IG++   A+ LG+P  +I G + + D
Sbjct: 392 KLYDDIMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIAGKRALED 443


>gi|15614982|ref|NP_243285.1| prolyl-tRNA synthetase [Bacillus halodurans C-125]
 gi|81857777|sp|Q9KA71|SYP_BACHD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|10175039|dbj|BAB06138.1| prolyl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 569

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 168/255 (65%), Gaps = 10/255 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S + +P ++E P DA++ SH+LMLR GMI Q + GIY++LPL ++ +  + +I+REE
Sbjct: 1   MKQSFFLVPTMREVPADADVVSHQLMLRAGMIRQVAAGIYTYLPLARRVIRKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+++PTL  A+LW ESGR++ YG E++RL DR+++    GPTHEEV+T + R 
Sbjct: 61  LDQTGAQEITMPTLHPAELWQESGRWEKYGDELMRLTDRHNRQFALGPTHEEVITSLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF    E     Y  M+ +
Sbjct: 121 SINSYKKLPLNVYQIQSKFRDERRPRFGLLRGREFIMKDAYSFHTGGESLDEMYKVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL   P+ A+SG IGG  +HEF+ LAD GE  +            S+ +D+ 
Sbjct: 181 YSRIFRRAGLNVRPVIADSGAIGGKDTHEFMALADVGEDTIAY----------SDQSDYA 230

Query: 241 DIISLNSIVEQWTAP 255
             I + ++   +T P
Sbjct: 231 ANIEMAAVKVNYTRP 245



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 91/148 (61%), Gaps = 5/148 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  GT YS  + ATF   +GK   + MG YGIG  R+VAAVIE  HD  GI
Sbjct: 402 AQGIEVGQVFKLGTVYSEKLGATFLDENGKSQPMLMGCYGIGVSRMVAAVIEQHHDEDGI 461

Query: 339 IWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +WP SVAPF + +  +N+K  +Q+     + +Y  L + G DV  DD  E+ G +F  AD
Sbjct: 462 VWPTSVAPFDVHVLALNVKKEEQM--KLADSVYHSLQQAGLDVLLDDRPERAGVKFKDAD 519

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           L+G PL+V VG K   +  VE+K R TG
Sbjct: 520 LIGLPLRVAVG-KRADEGYVEVKVRKTG 546


>gi|332983243|ref|YP_004464684.1| prolyl-tRNA synthetase [Mahella australiensis 50-1 BON]
 gi|332700921|gb|AEE97862.1| prolyl-tRNA synthetase [Mahella australiensis 50-1 BON]
          Length = 569

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F   L+E P +AEI SH+LMLR G++ + + GIY++LPLG++ L  V  I+REE
Sbjct: 1   MKMSEMFFTTLRETPSEAEIPSHQLMLRAGLMRKLASGIYNYLPLGKRVLKKVEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+    L  A+LW E+GR+D +G EM +L DRN++    GPTHEE+ TDI R+
Sbjct: 61  MDKTGAQEILASALLPAELWKETGRWDVFGPEMFKLKDRNEREFCLGPTHEEIFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LPF  YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SY KM+ +
Sbjct: 121 EIKSYKQLPFNLYQIQTKYRDEKRPRFGVMRSREFIMKDAYSFDKDWDGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y  IF R  LK   + A++G +GG  S+EF+V +D GE +V +C +
Sbjct: 181 YCAIFDRCDLKYWVVDADTGAMGGKDSNEFMVSSDVGEAEVAYCDE 226



 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 106/180 (58%), Gaps = 3/180 (1%)

Query: 259 TSDVHNEKLFDSLPE-NKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N ++ D  P+  K ++ ARGIEVGHIF  GTKY+  + AT+   +G++  + MG 
Sbjct: 380 VADIRNIEVGDPCPKCGKPINIARGIEVGHIFKLGTKYTEALGATYLDENGQEQPIIMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA+IE  HD +GIIWP SV P+ + ++    +      A EKI+  L   G
Sbjct: 440 YGIGINRTVAAIIEQHHDDRGIIWPMSVTPYHVIIVVASNYQPEQIQAAEKIHYELVSRG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F  ADL+G P+++ VG K +S   VE K R      D+ + ++++
Sbjct: 500 IEVLLDDRDERAGVKFNDADLIGIPIRITVGKK-ISAGMVEFKRRDKADSIDIPVSDIVD 558


>gi|326391122|ref|ZP_08212668.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992821|gb|EGD51267.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 570

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  + +C
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYC 224



 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 127/241 (52%), Gaps = 19/241 (7%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPIG  L  E +++ D    Q        +F + +  TD+  I ++N     +   + A
Sbjct: 334 AGPIG--LKGEVMIIVDNEIPQ------MRNFIVGANETDYH-IKNVN-----YGRDFKA 379

Query: 259 --TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +D+ N    D  P    +    RGIEVGHIF  GTKYS  + A +   +G +  + M
Sbjct: 380 DVVADIKNVIEGDKCPRCGSLLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R VAA+IE  HD KGIIWP SVAP+ + ++ +   ++      E IYA L K
Sbjct: 440 GCYGIGINRTVAAIIEQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQK 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD   + G +F  ADLLG P+++ VG K V D  VEIK R     E++ + +V
Sbjct: 500 EGIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-VDDGIVEIKLREKEEAEEVKISDV 558

Query: 435 I 435
           +
Sbjct: 559 V 559


>gi|120554655|ref|YP_959006.1| prolyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|152112927|sp|A1U1F0|SYP_MARAV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120324504|gb|ABM18819.1| prolyl-tRNA synthetase [Marinobacter aquaeolei VT8]
          Length = 577

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPSDAEIISHQLMLRAGMIRKLAAGLYTWLPLGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWQESGRWEQYGGELLRLNDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSF L  E    +Y  M  +
Sbjct: 121 ELKSYKELPANFYQIQTKFRDERRPRFGVMRAREFIMKDAYSFHLNAESLDETYKVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P++A+SG IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCNIFDRLGLDYRPVQADSGSIGGSSSHEFHVLASSGEDAIVFS 224



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 102/159 (64%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M+A+     GK   ++MG YGIG  R+VAA IE +HD KGII
Sbjct: 409 RGIEVGHIFKLGNKYSKAMNASVLDEHGKTSIMEMGCYGIGVSRIVAASIEQNHDEKGII 468

Query: 340 WPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H   V  +A +K+Y +L + G DV  DD  E+ G +FA  +L+
Sbjct: 469 WPDAIAPFEVAIVTLNGHKSPVVAEAGDKLYEQLRQAGYDVLLDDRNERPGVKFADIELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P + +V  + +S   +E K R    ++D+ ++E +++
Sbjct: 529 GIPHRFVVSERGLSAGTLEYKGRRDEEKQDIPVDEALSF 567


>gi|139948914|ref|NP_001077356.1| probable prolyl-tRNA synthetase, mitochondrial isoform 2 [Mus
           musculus]
 gi|159575933|emb|CAP19280.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 511

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/412 (35%), Positives = 216/412 (52%), Gaps = 36/412 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    D    S +LML+ G+I   S G Y  +P   +A++ +  +I +E    G  +++
Sbjct: 95  LEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKIN 154

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 155 MPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLP 214

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ +Y  +  +Y R+F RLG
Sbjct: 215 LLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLG 274

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L+ +  RA+ G IGG +SHEF +  D GE + V C          S NT+  D+     I
Sbjct: 275 LQWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHF-----SANTEILDLS--QKI 327

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                 P   T                    +GIEVGH FY  TKYS   +A F  A G+
Sbjct: 328 CPDCQGPLTET--------------------KGIEVGHTFYLSTKYSSIFNALFTNAHGE 367

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
               +MG YG+G  R++AA IE       I WP  +AP+++ +I  K  + +    +  E
Sbjct: 368 SLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVE 427

Query: 367 KIY----ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           K+Y      + ++  +V  DD     IG++   A+ LG+P  +I G + + D
Sbjct: 428 KLYDDIMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIAGKRALED 479


>gi|307266366|ref|ZP_07547904.1| prolyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918602|gb|EFN48838.1| prolyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 570

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  + +C
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYC 224



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  HD KGII
Sbjct: 405 RGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHHDEKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F  ADLLG
Sbjct: 465 WPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFNDADLLG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 525 IPIRITVGKK-VDDGIVEIKLREKEEAEEVKISDVV 559


>gi|269940754|emb|CBI49136.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
          Length = 567

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|258452562|ref|ZP_05700568.1| prolyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257859780|gb|EEV82622.1| prolyl-tRNA synthetase [Staphylococcus aureus A5948]
          Length = 567

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|298694555|gb|ADI97777.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 567

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|87161679|ref|YP_493853.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194973|ref|YP_499773.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221385|ref|YP_001332207.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509429|ref|YP_001575088.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142497|ref|ZP_03566990.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262048155|ref|ZP_06021042.1| prolyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262051325|ref|ZP_06023548.1| prolyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282920507|ref|ZP_06328228.1| prolyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|284024256|ref|ZP_06378654.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|294848259|ref|ZP_06789006.1| prolyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|304381173|ref|ZP_07363826.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|114152254|sp|Q2FHH5|SYP_STAA3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152255|sp|Q2G1Z4|SYP_STAA8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172049021|sp|A6QGG3|SYP_STAAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083518|sp|A8Z3U3|SYP_STAAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87127653|gb|ABD22167.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202531|gb|ABD30341.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374185|dbj|BAF67445.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368238|gb|ABX29209.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259160700|gb|EEW45721.1| prolyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|259163721|gb|EEW48276.1| prolyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|282594169|gb|EFB99156.1| prolyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|294825059|gb|EFG41481.1| prolyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|302751086|gb|ADL65263.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340156|gb|EFM06097.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198505|gb|EFU28834.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140920|gb|EFW32767.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144364|gb|EFW36130.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313933|gb|AEB88346.1| Prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
 gi|329727831|gb|EGG64282.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 567

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|312877991|ref|ZP_07737931.1| prolyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795226|gb|EFR11615.1| prolyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 572

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 154/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++ +C
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYC 224



 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 123/242 (50%), Gaps = 17/242 (7%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPIG  +     V AD         K   +F + +  TD+   I   ++ +     +A 
Sbjct: 333 AGPIGLSID----VYADNE------VKYLKNFVVGANKTDYH--IKNVNLSDFKVTKFAD 380

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             ++  + L       K    RGIEVGHIF  GTKY+   +  +    G+   + MG YG
Sbjct: 381 LRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCYG 440

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L K G +
Sbjct: 441 IGINRTAAAIIEQMHDEDGIIWPITVAPYEVIIVPVNVKDEAQNKIAFEIYENLQKNGVE 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
           V  DD  E+ G +F  ADL+G P +V VG K VS+ K+EI++R T     +  D ++E +
Sbjct: 501 VLIDDRDERAGVKFKDADLIGIPFRVTVGKK-VSEGKLEIRNRRTKESFEVEIDNAVEFI 559

Query: 435 IN 436
           IN
Sbjct: 560 IN 561


>gi|282916523|ref|ZP_06324281.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770327|ref|ZP_06343219.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319010|gb|EFB49362.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460474|gb|EFC07564.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 567

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|260881838|ref|ZP_05893576.1| proline--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260847809|gb|EEX67816.1| proline--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 571

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/287 (43%), Positives = 174/287 (60%), Gaps = 16/287 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L+  P +AEIASH+LM R GMI + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRASNLYAPTLRNTPAEAEIASHQLMYRAGMIRKTAGGMYTFLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+ W ESGR+ +YG EM+R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAEFWQESGRWGAYGDEMMRIKDRHGRDFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MRSREF+MKD YSFD   EG   SY KM+ +
Sbjct: 121 EVRSYKELPLMLYQIQDKFRDERRPRFGLMRSREFIMKDLYSFDKDVEGMNESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y  IF R+GL+  P+ A++G IGG  SHEF VLAD GE+ +  C+K   D+    E  + 
Sbjct: 181 YTNIFTRMGLEFRPVEADNGAIGGGHSHEFTVLADAGESNIAVCTK--CDYAASDEKAEL 238

Query: 240 -------DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                  +D + L  +    T    A  D      F  +P +K + A
Sbjct: 239 KPVEAPAEDELPLEKVSTPGTNTIEALCD------FLKVPADKTIKA 279



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 89/145 (61%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE G +F  GTKYS  M ATF   +GK+  + MG YGIG  R +AA IE ++D +GI+
Sbjct: 406 RGIEAGQVFTLGTKYSKAMGATFLDENGKEQPLVMGCYGIGVGRTMAAAIEQNNDDQGIV 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF++ ++ + A  +      E IY    K G DV  DD  E+ G +F   DL+G
Sbjct: 466 WPRAIAPFEVVVVAVNAKKEEQLTYAEGIYDECRKAGLDVLLDDRKERAGVKFKDCDLIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
           +P++V +G K V +  +E+K R TG
Sbjct: 526 YPVRVTIGPKAVDEDIIEVKVRKTG 550


>gi|312128280|ref|YP_003993154.1| prolyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778299|gb|ADQ07785.1| prolyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 572

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 154/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++ +C
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYC 224



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 101/183 (55%), Gaps = 1/183 (0%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +A   ++  + L       K    RGIEVGHIF  GTKY+   +  +    G+   + MG
Sbjct: 378 FADLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLMIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L K 
Sbjct: 438 CYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNVKDENQNKIAFEIYENLQKN 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +F  ADL+G P +V VG K +S+ K+EI++R T    ++ +E+ I
Sbjct: 498 GVEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-ISEGKLEIRNRRTKESFEVEIEKAI 556

Query: 436 NYA 438
            + 
Sbjct: 557 EFV 559


>gi|45656749|ref|YP_000835.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|81830828|sp|Q72U06|SYP_LEPIC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|45599985|gb|AAS69472.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 576

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 158/225 (70%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G++ + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MKASKYILPTEKENPADAVVASHRLMIRAGLVRKSSAGLYFYLPLGLKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNSTGALEFDLPILTPSDFWEQSGRWSAMGKEMFRIQDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M V+
Sbjct: 121 LLKSYKDLPVNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDSSLDDTYQAMRVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCS 224
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  G ET + C+
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCN 225



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 84/145 (57%), Gaps = 3/145 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +GIEVGHIF  G KY+          +GK   +  G YGIG  R +A VIE  +D KG
Sbjct: 402 AEKGIEVGHIFKLGDKYTKAFGIQVLDQNGKSKTLTTGCYGIGVNRTMATVIEQCNDEKG 461

Query: 338 IIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I WP S+APF++SL++I K  DQ  +   E+ Y  L   G +VFWDD     G +   ++
Sbjct: 462 IFWPISIAPFEVSLVSIVKGEDQYSK--IEEFYNVLINEGIEVFWDDRDLGPGFKLKDSE 519

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+GFP+++ +G KF    ++ I +R
Sbjct: 520 LIGFPIRITIGKKFFESGEISIYNR 544


>gi|312794183|ref|YP_004027106.1| prolyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181323|gb|ADQ41493.1| prolyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 572

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 154/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++ +C
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYC 224



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 13/240 (5%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPIG  +     V AD         K   +F + +  TD+   I   ++ +     +A 
Sbjct: 333 AGPIGLSID----VYADNE------VKYLKNFVVGANKTDYH--IKNVNLSDFKVTKFAD 380

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             ++  + L       K    RGIEVGHIF  GTKY+   +  +    G+   + MG YG
Sbjct: 381 LRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCYG 440

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R  AA+IE  HD  GIIWP +VAP+++ ++ +  +D+       +IY +L K G +
Sbjct: 441 IGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNVNDENQNKIAFEIYEKLQKNGVE 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +F  ADL+G P +V VG K VS+ K+EI++R T    ++ +E+ I + 
Sbjct: 501 VLIDDRDERAGVKFKDADLIGIPFRVTVGKK-VSEGKLEIRNRRTKESFEVEIEKAIEFV 559


>gi|329733665|gb|EGG69993.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 567

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|57651833|ref|YP_186139.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|81175020|sp|Q5HGG8|SYP_STAAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57286019|gb|AAW38113.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
          Length = 567

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|120612314|ref|YP_971992.1| prolyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|152074741|sp|A1TTD0|SYP_ACIAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120590778|gb|ABM34218.1| prolyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
          Length = 581

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 157/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFVSTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEYWQETGRFDKMGPELLRIRDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE   V+C +
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQ 226



 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 5/167 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   A  RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG 
Sbjct: 393 VADLRNVVAGDPSPDGKGTLAIERGIEVGHVFYLGTKYSRAMNATFLGEDGKPAFFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSK 374
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I +   D+V R A EK++A L  
Sbjct: 453 YGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVVCPIGMDRSDEV-RAAAEKLHADLLT 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G DV  DD GE+ G+ FA  +L+G P +V++  + + + +VE +HR
Sbjct: 512 AGVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGLKEGQVEYQHR 558


>gi|49486102|ref|YP_043323.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81175024|sp|Q6G9V0|SYP_STAAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49244545|emb|CAG42974.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 567

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|15924253|ref|NP_371787.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926846|ref|NP_374379.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|21282875|ref|NP_645963.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|148267753|ref|YP_001246696.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393812|ref|YP_001316487.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979584|ref|YP_001441843.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315619|ref|ZP_04838832.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733499|ref|ZP_04867664.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006050|ref|ZP_05144651.2| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795681|ref|ZP_05644660.1| prolyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258416084|ref|ZP_05682352.1| prolyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258421667|ref|ZP_05684591.1| prolyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258434823|ref|ZP_05688897.1| prolyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258444601|ref|ZP_05692930.1| prolyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258447566|ref|ZP_05695710.1| prolyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258449408|ref|ZP_05697511.1| prolyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258454787|ref|ZP_05702751.1| prolyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|269202880|ref|YP_003282149.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282892751|ref|ZP_06300986.1| prolyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|295406200|ref|ZP_06816007.1| prolyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296274821|ref|ZP_06857328.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297208091|ref|ZP_06924522.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297244428|ref|ZP_06928311.1| prolyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|300912172|ref|ZP_07129615.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81175021|sp|Q99UK9|SYP_STAAM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175022|sp|Q7A5Y3|SYP_STAAN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175025|sp|Q7A120|SYP_STAAW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980161|sp|A7X1P3|SYP_STAA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083516|sp|A6U182|SYP_STAA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083517|sp|A5ISE7|SYP_STAA9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13701063|dbj|BAB42358.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus N315]
 gi|14247033|dbj|BAB57425.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204314|dbj|BAB95011.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|147740822|gb|ABQ49120.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946264|gb|ABR52200.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721719|dbj|BAF78136.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253728553|gb|EES97282.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789653|gb|EEV27993.1| prolyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257839232|gb|EEV63708.1| prolyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257842353|gb|EEV66778.1| prolyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257849184|gb|EEV73166.1| prolyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257850094|gb|EEV74047.1| prolyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257853757|gb|EEV76716.1| prolyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257857396|gb|EEV80294.1| prolyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257863170|gb|EEV85934.1| prolyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262075170|gb|ACY11143.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282764748|gb|EFC04873.1| prolyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|285816945|gb|ADC37432.1| Prolyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|294968788|gb|EFG44810.1| prolyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296887334|gb|EFH26236.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178458|gb|EFH37704.1| prolyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|300886418|gb|EFK81620.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312829657|emb|CBX34499.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315131057|gb|EFT87041.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727670|gb|EGG64126.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 567

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|320335266|ref|YP_004171977.1| prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756555|gb|ADV68312.1| prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 504

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/485 (31%), Positives = 227/485 (46%), Gaps = 66/485 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  +    +  P +A++ASH+ ++R G + +   G+Y+ LPL  +    + A++  E
Sbjct: 1   MRWSALWAFTSRAMPSEADVASHQWLVRAGFVERVGAGLYASLPLMSRVEARLEALVHAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
               GA E+ +P LQ A LW  SGR+D+Y  E  M  LADR  +A+   PTHEE +  + 
Sbjct: 61  MRAVGAQEVRLPMLQPAALWAASGRWDAYRAEGLMFSLADRAGRALTLAPTHEEAVAFLA 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  ++   +LP   YQ+  KFRDELRPR G++R+REF MKDAYS          ++  M 
Sbjct: 121 RG-LRREADLPKVVYQVGRKFRDELRPRGGLLRAREFTMKDAYSVHADEVSLAGTFEAMS 179

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y R+   LG+    + A+SG IGG +S EF+VL+D GE  V  + D +   +    + 
Sbjct: 180 GAYARLLGALGVPWRAVEADSGSIGGAVSREFMVLSDIGEDTVLTAPDGVAVNVERAVSL 239

Query: 239 FDDIISLNSIVEQWTAPYA---------------ATSDVHNEKLFDSLPENKRVSAR--- 280
            D    + + V+ WT  +A               A + V   ++   L     V AR   
Sbjct: 240 PDAAPGVGARVDAWTVTFADGAVVGVRVRVRADHAVNGVKLARVVAGLSGQAVVDAREGI 299

Query: 281 -------------GIEVG-------------------------------HIFYFGTKYSL 296
                        G+ VG                               H F  G +Y+ 
Sbjct: 300 AAVQFEVTDGACPGVGVGAVADVRVARAGERTAHAPQQRWVAARGIEVGHAFQLGARYTE 359

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            + A F GADG      MG YGIG  R+  AV E + DG G+ WP  +APF + +    +
Sbjct: 360 ALGARFVGADGSSRAPLMGCYGIGVSRLAQAVAEVTCDGWGLNWPAVIAPFGVVVTVTNS 419

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D   R+A E++Y  L   G D   DD  E+ G +   A+++G PL+V VG    +   V
Sbjct: 420 ADAAQREAGERVYGALVAAGVDALLDDRAERAGVKLRDAEMIGVPLRVTVGRDLAA-GNV 478

Query: 417 EIKHR 421
           E+  R
Sbjct: 479 ELFTR 483


>gi|302332869|gb|ADL23062.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 567

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV+PF + LI+I       R+  +++YA+ ++   DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVSPFDVHLISINPKKDDQRELADQLYAKFNE-KFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|167039496|ref|YP_001662481.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300915254|ref|ZP_07132569.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307725178|ref|YP_003904929.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|226701350|sp|B0K5F2|SYP_THEPX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166853736|gb|ABY92145.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300888978|gb|EFK84125.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307582239|gb|ADN55638.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 570

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  + +C
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSIGEAVIAYC 224



 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  HD KGII
Sbjct: 405 RGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHHDEKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F  ADLLG
Sbjct: 465 WPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFNDADLLG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 525 IPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVV 559


>gi|282927605|ref|ZP_06335221.1| prolyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282590608|gb|EFB95685.1| prolyl-tRNA synthetase [Staphylococcus aureus A10102]
          Length = 567

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|256752497|ref|ZP_05493354.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748632|gb|EEU61679.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 570

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  + +C
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSIGEAVIAYC 224



 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  HD KGII
Sbjct: 405 RGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHHDEKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F  ADLLG
Sbjct: 465 WPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFNDADLLG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 525 IPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVV 559


>gi|332637693|ref|ZP_08416556.1| prolyl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 573

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 152/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SH++MLR G +   S G+Y++LPL Q+ L+ +NAIIREE
Sbjct: 1   MKQSKVFIPTLRETPADAEVISHQMMLRAGYMRPVSAGVYAYLPLAQRVLNKINAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEMS P L  A++W ESGRY++YG  + +L +R+D+ MI GPTHEE MT + R 
Sbjct: 61  MEKIDAIEMSAPMLLPAEMWQESGRYETYGPNLFKLKNRHDRDMILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFGV+R REF+MKDAYSF +  +G   SY  M  +
Sbjct: 121 DIKSYKRLPLTVYQIQTKFRDENRPRFGVLRGREFIMKDAYSFSVDQDGLDESYKNMESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+ IF R+GL    +  ++G +GG  S EF   A+ GE
Sbjct: 181 YINIFDRIGLDYRVIVGDAGAMGGSDSKEFSAPAEAGE 218



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GT+YS  M A    A+G+   V MGSYGIG  R++AA+ E + D  G+ 
Sbjct: 404 KGIEIGHIFKLGTRYSKSMGAQVLDANGRQADVIMGSYGIGVSRLLAAIAEQNADENGLA 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+ + L+ +K  D+  R   +++  +L + G +V  DD  E+ G +F  +DL+G
Sbjct: 464 WPTSVAPWDVHLVPMKYSDETQRALTDELNDKLVEAGYEVLVDDRNERAGVKFNDSDLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            P++V +G K   +  VE+K R      ++  EE+++
Sbjct: 524 LPVRVTIGKK-AGEGIVEVKLRKADEAIEVRTEELVS 559


>gi|302871195|ref|YP_003839831.1| prolyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574054|gb|ADL41845.1| prolyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 572

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 154/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAIFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++ +C
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYC 224



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 94/168 (55%), Gaps = 1/168 (0%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +A   ++  + L       K    RGIEVGHIF  GTKY+      +    G+  ++ MG
Sbjct: 378 FADLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTEAFGCVYTDEKGEKKFMIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L K 
Sbjct: 438 CYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNVKDENQSKIAFEIYENLQKN 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           G +V  DD  E+ G +F  ADL+G P +V VG K VS+ K+EI++R T
Sbjct: 498 GVEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-VSEGKIEIRNRRT 544


>gi|24215989|ref|NP_713470.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|81846319|sp|Q8F148|SYP_LEPIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24197213|gb|AAN50488.1|AE011490_3 prolyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 576

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 158/225 (70%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G++ + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MKASKYILPTEKENPADAVVASHRLMIRAGLVRKSSAGLYFYLPLGLKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNSTGALEFDLPILTPSDFWEQSGRWSAMGKEMFRIQDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M V+
Sbjct: 121 LLKSYKDLPVNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDSSLDDTYQAMRVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCS 224
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  G ET + C+
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCN 225



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 85/145 (58%), Gaps = 3/145 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +GIEVGHIF  G KY+          +GK   + MG YGIG  R +A VIE  +D KG
Sbjct: 402 AEKGIEVGHIFKLGDKYTKAFGIQVLDQNGKSKTLTMGCYGIGVNRTMATVIEQCNDEKG 461

Query: 338 IIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I WP S+APF++SL++I K  DQ  +   E+ Y  L   G +VFWDD     G +   ++
Sbjct: 462 IFWPISIAPFEVSLVSIVKGEDQYFK--IEEFYNVLMNEGIEVFWDDRDLGPGFKLKDSE 519

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+GFP+++ +G KF    ++ I +R
Sbjct: 520 LIGFPIRITIGKKFFESGEISIYNR 544


>gi|303232046|ref|ZP_07318749.1| proline--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513152|gb|EFL55191.1| proline--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 572

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 158/225 (70%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AIIREE
Sbjct: 1   MLASKLYAPTLREVPSDADVVSQQLMLRAGFMRKVANGLYSFLPLGWRSIKKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRSGAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDVEYCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKD YSFD+    +  SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDGYSFDIDDAAADVSYKNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +  CS
Sbjct: 181 YSRIFTRCGLTFRPVEADSGAIGGSNTHEFMAIAEAGEADIIHCS 225



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 93/156 (59%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIEVG +F  GTKYS  + AT+   +G+ + + MG YGIG  R +AA IE  HD  GI
Sbjct: 406 SKGIEVGQVFKLGTKYSESLQATYLDQNGRPNAMVMGCYGIGVSRTLAAAIEQYHDENGI 465

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP ++APF++ ++ I A D+        IY  L     DV  DD  ++ G +F  ADL+
Sbjct: 466 VWPRAIAPFEVVIVPINAKDEALMSTSTSIYDTLLNNKVDVLLDDRKDRAGVKFKDADLI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G+PL++ V    +  ++VEI+ R TG   +  ++EV
Sbjct: 526 GYPLRITVSKNTLESNEVEIRVRKTGEAINCPIDEV 561


>gi|312134482|ref|YP_004001820.1| prolyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774533|gb|ADQ04020.1| prolyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 572

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 153/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQELHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRELPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++ +C
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYC 224



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 93/168 (55%), Gaps = 1/168 (0%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +A   ++  + L       K    RGIEVGHIF  GTKY+      +    G+   + MG
Sbjct: 378 FADLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTEAFGCVYTDEKGEKKLMIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L K 
Sbjct: 438 CYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNIKDENQHKIAFEIYENLQKN 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           G +V  DD  E+ G +F  ADL+G P +V VG K VS+ K+EI++R T
Sbjct: 498 GIEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-VSEGKLEIRNRRT 544


>gi|332528434|ref|ZP_08404426.1| prolyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
 gi|332042113|gb|EGI78447.1| prolyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 581

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SH+LM R GMI +   GIY+++P+G + ++ V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHQLMTRAGMIKKLGAGIYTYMPMGLRVINKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+++P +Q A+LW E+GR++  G E+LR+ DR+++  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIELTMPVIQPAELWQETGRFEKMGPELLRIQDRHERDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  ++ SY  M  +
Sbjct: 121 EFKSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPASAQISYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y   F R GL+   + A+SG IGGDLS EF V+A TGE   ++C
Sbjct: 181 YRAAFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIIYC 224



 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+ K V A  RGIE+GHIFY GTKYS  M+ATF   +GK  + +M
Sbjct: 391 ALVADLRNVVEGDLSPDGKGVLAIERGIEIGHIFYLGTKYSKAMNATFLDENGKPQFFEM 450

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  R+ AA IE +HD KGIIWPD++APF + +  I        + A EK+YA L 
Sbjct: 451 GCYGIGITRLPAAAIEQNHDAKGIIWPDAIAPFTVVVCPINPDRSPEVKTAAEKLYAELL 510

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G DV  DD GE+ G+ FA  +L+G P +V +G + + + KVE +HR
Sbjct: 511 AAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRTLKEGKVEYQHR 558


>gi|228474993|ref|ZP_04059721.1| proline--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270978|gb|EEK12366.1| proline--tRNA ligase [Staphylococcus hominis SK119]
          Length = 566

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L++++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPSEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNHISRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MENIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y +M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQEMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGHHTHEFMALSEIGEDTIVYSEN 226



 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+A F    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSEAMNAKFIDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF + LI I    +   +  +K+Y+ L +   DV +DD  E+ G +F  ADL+
Sbjct: 462 IWPKSVTPFDLHLITINPKKEEQLELGDKLYSEL-QSKYDVLYDDRKERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P++++VG K  S+  VE+K R TG  E++ + E+ N+
Sbjct: 521 GLPIRIVVG-KNASEGIVEVKVRQTGESEEVHINELDNH 558


>gi|303234780|ref|ZP_07321406.1| proline--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302494121|gb|EFL53901.1| proline--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 576

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/235 (48%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPVTQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVNEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGEG-VICYSDDSDFAATDE 234



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG+IF  G KYS  M+ATF   +GK+ +  MGSYGIG  R V+A++E +HD KG+I
Sbjct: 403 RGIEVGNIFQLGQKYSKSMNATFLDENGKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMI 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAP+ + +  +   D+      EK+Y +L   G +V  DD  E++G +F   DL+G
Sbjct: 463 WPLVVAPYHVIITIVNTKDEEQNTLAEKLYEKLLLQGVEVLLDDRKERVGVKFNDRDLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            PL++ VG K   D  VE   R T    +MS  E
Sbjct: 523 IPLRITVGKKAAEDI-VEFSERRTLENVEMSSTE 555


>gi|253731882|ref|ZP_04866047.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724292|gb|EES93021.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 567

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 161/226 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRRFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|222528589|ref|YP_002572471.1| prolyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|254782881|sp|B9MPD7|SYP_ANATD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222455436|gb|ACM59698.1| prolyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 572

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 153/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+   G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDENGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++ +C
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYC 224



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 260 SDVHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +D+ N    D  P+    K    RGIEVGHIF  GTKY+   +  +    G+   + MG 
Sbjct: 379 TDLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+  +    +IY  L + G
Sbjct: 439 YGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIIVPVNVKDENQKKIAFEIYENLQRNG 498

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +V  DD  E+ G +F  ADL+G P +V VG K +S+ K+EI++R T    ++ +E+ I
Sbjct: 499 VEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-ISEGKLEIRNRRTKESFEVEIEKAI 556


>gi|314936576|ref|ZP_07843923.1| proline--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313655195|gb|EFS18940.1| proline--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 566

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L++++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPSEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNHISRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MENIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y +M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQEMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGHHTHEFMALSEIGEDTIVYSEN 226



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+A F    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSEAMNAKFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF + LI I    +   +  +K+Y+ L +   DV +DD  E+ G +F  ADL+
Sbjct: 462 IWPKSVTPFDLHLITINPKKEEQLELGDKLYSEL-QSKYDVLYDDRKERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P++++VG K  S+  VE+K R TG  E++ + E+ N+
Sbjct: 521 GLPIRIVVG-KNASEGIVEVKVRQTGESEEVHINELDNH 558


>gi|303228556|ref|ZP_07315384.1| proline--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516803|gb|EFL58717.1| proline--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 572

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 158/225 (70%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AIIREE
Sbjct: 1   MLASKLYAPTLREVPSDADVVSQQLMLRAGFMRKVANGLYSFLPLGWRSIKKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRSGAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDVEYCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKD YSFD+    +  SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDGYSFDIDDAAADVSYKNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +  CS
Sbjct: 181 YSRIFTRCGLTFRPVEADSGAIGGSNTHEFMAIAEAGEADIIHCS 225



 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 95/165 (57%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIEVG +F  GTKYS  + AT+   +G+ + + MG YGIG  R +AA IE  HD  GI
Sbjct: 406 SKGIEVGQVFKLGTKYSESLQATYLDQNGRPNAMVMGCYGIGVSRTLAAAIEQYHDENGI 465

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++APF++ ++ I A D+        IY  L     DV  DD  ++ G +F  ADL+
Sbjct: 466 IWPRAIAPFEVVIVPINAKDEALMSTSTSIYDTLLNNKVDVLLDDRKDRAGVKFKDADLI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G+PL++ V    +  ++VEI+ R TG   +  ++EV N      S
Sbjct: 526 GYPLRITVSKNTLESNEVEIRVRKTGEAINCPIDEVSNKVQELLS 570


>gi|317052052|ref|YP_004113168.1| prolyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316947136|gb|ADU66612.1| prolyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 572

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 153/226 (67%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FL   +E P DAE+ SH+LMLR G I + + GIYS+LPL  + L  +  IIREE
Sbjct: 1   MRYSQAFLFTAKETPSDAEVISHQLMLRGGYIKKTAAGIYSYLPLAWRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P    A+LW+ESGR+  YG E+LR  DR+ +    GPTHEE +TDI R 
Sbjct: 61  MTREGAEELMMPAALPAELWMESGRWQKYGPELLRFQDRHGRDFCIGPTHEEAITDIVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD+  E S  +Y KM+ +
Sbjct: 121 AVSSYRHLPKNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDVDDEASATTYEKMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
           Y  IF R GL    + A+SG IGG  SHEF+VLA++GE  +  CSK
Sbjct: 181 YSSIFRRCGLSFKAVEADSGQIGGSFSHEFMVLANSGEDGIASCSK 226



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 2/156 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GT YS  M AT+   +GK+  + MG YGIG  R  AA IE +HD KGII
Sbjct: 402 RGIEVGHVFRLGTVYSQSMKATYLDRNGKEQPMVMGCYGIGVGRTAAAAIEQNHDDKGII 461

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP S+AP+++ +  +  + D+  R   + +Y RL+   CDV +DD  E+ G +F  ++L+
Sbjct: 462 WPMSIAPYQVVICTVNPSRDEQSRATADSLYERLAAT-CDVLYDDRDERPGVKFIDSELI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ +  K +  S VEI  R +G +    LE +
Sbjct: 521 GIPLRLTISQKTLEQSSVEITIRKSGEKYLHPLETI 556


>gi|258423896|ref|ZP_05686781.1| prolyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257845925|gb|EEV69954.1| prolyl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 567

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  E +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELAEALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|194364305|ref|YP_002026915.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|226701341|sp|B4SJ64|SYP_STRM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194347109|gb|ACF50232.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 567

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQTFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVFS 224



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 92/166 (55%), Gaps = 4/166 (2%)

Query: 259 TSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+ N +  D +L   +   ARGIEVGH+F  G  Y+  + AT    +GK   + MG Y
Sbjct: 384 VADIRNVRAGDRALDGGELKIARGIEVGHVFQLGRTYARALDATVLDENGKAAVMAMGCY 443

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKV 375
           GIG  RVVAA IE +HD  GIIWPD++AP++  + +IN K  D    DA   +   L   
Sbjct: 444 GIGISRVVAAAIEQNHDDAGIIWPDAMAPWQVVVCVINPKG-DAAVADAATNLLQELRDA 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G D   DD G + G+ FA  +L+G P +V+V  + ++    E + R
Sbjct: 503 GLDAALDDRGLRPGAMFADMELIGIPHRVVVSERGLAAGTYEYRSR 548


>gi|283470478|emb|CAQ49689.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
          Length = 567

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|282903818|ref|ZP_06311706.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282595436|gb|EFC00400.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
          Length = 567

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|15896426|ref|NP_349775.1| prolyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|81854743|sp|Q97ED5|SYP_CLOAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15026247|gb|AAK81115.1|AE007813_2 Prolyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325510583|gb|ADZ22219.1| prolyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 570

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/265 (46%), Positives = 169/265 (63%), Gaps = 10/265 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E+P +AEI SHKLMLR+GMI + + G+Y+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLMLTLRESPAEAEIESHKLMLRSGMIRKMASGVYNYMPLGLKALKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  ++LW ESGR++ +G EM +L DRN++    GPTHEEV TD  RS
Sbjct: 61  MNAAGAQEFLASALLPSELWKESGRWEVFGPEMFKLKDRNEREFCLGPTHEEVFTDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG++RSREF+MKDAYSFD   EG   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGMIRSREFVMKDAYSFDKDNEGLDVSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK-----DFMDFPIPS 234
           Y +IF R  +    + A+SG +GG  S EF+V ++ GE ++ FC++     +    P   
Sbjct: 181 YTKIFKRCNVSCSAVAADSGAMGGSGSAEFMVKSEIGEDEIAFCTECNYAANIEKAPAVP 240

Query: 235 ENTDFDDIISLNSIVEQWTAPYAAT 259
           E  D +++  L  +      P+A T
Sbjct: 241 EKADKEELGELKKV----ETPHAKT 261



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 103/173 (59%), Gaps = 5/173 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  GTKYS  M A F   +G+   + MG YGIG  R ++AV+E  HD  GI
Sbjct: 400 ARGIEVGHIFKLGTKYSEAMKAYFVDENGESKPLIMGCYGIGVNRTMSAVVEQHHDDNGI 459

Query: 339 IWPDSVAPFKISLIN--IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +WP SVAP+++ ++    K+ +Q+     EK+Y  L K+G D   DD  E+ G +F  AD
Sbjct: 460 VWPLSVAPYEVIVVPAVFKSEEQM--KEAEKLYTELKKIGVDALLDDRNERAGVKFKDAD 517

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K +S+ KVE K R +   E + L++VI      F  N   L
Sbjct: 518 LIGIPMRITVGKK-ISEGKVEFKCRNSEEVEVIDLDKVIARVEEEFEKNNLAL 569


>gi|49483426|ref|YP_040650.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425317|ref|ZP_05601742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427978|ref|ZP_05604376.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430611|ref|ZP_05606993.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433371|ref|ZP_05609729.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436213|ref|ZP_05612260.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282905581|ref|ZP_06313436.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908556|ref|ZP_06316386.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910835|ref|ZP_06318638.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914040|ref|ZP_06321827.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282918962|ref|ZP_06326697.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282924085|ref|ZP_06331761.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|283958006|ref|ZP_06375457.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501072|ref|ZP_06666923.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510034|ref|ZP_06668742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293526620|ref|ZP_06671305.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427750|ref|ZP_06820382.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591292|ref|ZP_06949930.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|81175023|sp|Q6GHH2|SYP_STAAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49241555|emb|CAG40241.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271774|gb|EEV03912.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274819|gb|EEV06306.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278739|gb|EEV09358.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281464|gb|EEV11601.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284495|gb|EEV14615.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282314057|gb|EFB44449.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282316772|gb|EFB47146.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282322108|gb|EFB52432.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325440|gb|EFB55749.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327618|gb|EFB57901.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330873|gb|EFB60387.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283790155|gb|EFC28972.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920692|gb|EFD97755.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291096077|gb|EFE26338.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466978|gb|EFF09496.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|295128108|gb|EFG57742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576178|gb|EFH94894.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|312438357|gb|ADQ77428.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194151|gb|EFU24544.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 567

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKE 226



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+
Sbjct: 462 VWPKSVTPFDLHLISINPKKDDQRELADALYAEFN-TKFDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+++VG K  S+  VE+K RLTG  E++ +++++   ++++ N
Sbjct: 521 GLPLRIVVG-KRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDN 565


>gi|302335688|ref|YP_003800895.1| prolyl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301319528|gb|ADK68015.1| prolyl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 571

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 114/223 (51%), Positives = 157/223 (70%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+ + P L+E+P DAE+ASH+L+LR GMI + + G+YS+LPL  +++  + AIIR+E 
Sbjct: 6   KMSRLYAPTLKEDPTDAELASHRLLLRAGMIRKGAAGLYSYLPLAWRSIRKIEAIIRDEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA EM VP L  ADLW +SGR++ YG E++R+ DR+  +   GPTHEE  TD+  + 
Sbjct: 66  ETIGAQEMQVPILTDADLWHQSGRWEVYGPELMRIDDRHGHSYALGPTHEESFTDLVHNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP T YQ+Q KFRDE RPRFG+MR REF+MKDAYSF  T E  +  Y +   +Y
Sbjct: 126 LKSYKQLPVTLYQVQDKFRDERRPRFGLMRGREFIMKDAYSFSATQESLRQCYEEEKAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
            RI  R GL+++P+ A+SG IGGD S EF+ LAD GE + V+C
Sbjct: 186 ARIAERCGLRALPVVADSGQIGGDSSVEFMALADAGEAELVYC 228



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 96/169 (56%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIE+  +F  GTKYS  M ATF   DG++    MG YGIG  R +AAV+E  HD  G
Sbjct: 402 GARGIEISQVFQLGTKYSEAMGATFTDEDGREKPFLMGCYGIGVSRTLAAVVEQHHDEHG 461

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I WP SVAP+++ +I +   D +     E++   L   G +V  DD  E+ G +F  ADL
Sbjct: 462 ISWPVSVAPYEVEVIPLDVRDDLVWPVAERLATGLVDAGVEVVVDDRKERPGVKFNDADL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +GFP QV+ G K + D  VE+K R TG R ++ + E +   + R    R
Sbjct: 522 MGFPFQVVCGKKAIRDGNVELKLRATGERLELPIAEAVRAVAERVLAQR 570


>gi|169823842|ref|YP_001691453.1| prolyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|226701290|sp|B0RZJ0|SYP_FINM2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167830647|dbj|BAG07563.1| prolyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 576

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/235 (48%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPITQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVNEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGEG-VICYSDDSDFAATDE 234



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG+IF  G KYS  M+ATF   +GK+ +  MGSYGIG  R V+A++E +HD KG+I
Sbjct: 403 RGIEVGNIFQLGQKYSKSMNATFLDENGKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMI 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAP+ + +  +   D+      EK+Y +L   G +V  DD  E++G +F   DL+G
Sbjct: 463 WPLVVAPYHVIITIVNTKDEEQNTLAEKLYEKLLLQGVEVLLDDRKERVGVKFNDRDLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            PL++ VG K   D  VE   R T    +MS  E
Sbjct: 523 IPLRITVGKKAAEDI-VEFSERRTLENVEMSSTE 555


>gi|327398599|ref|YP_004339468.1| Prolyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181228|gb|AEA33409.1| Prolyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 578

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 157/221 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E+ ++A I SH L+LR G I + + GIY++LPLG + +  V+ I+REE
Sbjct: 1   MRYSESFIYTLKEDQKEAAIVSHNLLLRGGFILKLASGIYNYLPLGLRVIRKVSDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +  +Q A+LW ESGR++ YGKE+LR+ DR D+  ++GPTHEEV+TDI R 
Sbjct: 61  MNKAGAQEILMAAIQPAELWKESGRWNDYGKELLRIKDRGDRDFVFGPTHEEVVTDIVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDELRPRFG+MR REF+MKDAYSFD    G   SY KM ++
Sbjct: 121 FVKSYKQMPLNLYQIQTKFRDELRPRFGLMRGREFIMKDAYSFDKDEAGMDVSYEKMNIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R GL    + A++G IGG  S EF+VL+ TGE ++
Sbjct: 181 YHNIFRRCGLAFRSVEADTGSIGGKDSEEFMVLSQTGEDEI 221



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 104/180 (57%), Gaps = 3/180 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           T+D+   K  +  P  K+ +    RGIEVGHIF  G KYS  M+ATF   +G+     MG
Sbjct: 379 TADLRVVKEGELCPRCKKGTLKKIRGIEVGHIFKLGQKYSKAMNATFLDENGRSVPYYMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R   A IE +HD  GIIWP S+APF+I ++++   ++   + C+ +Y ++ K 
Sbjct: 439 CYGIGIGRTAQAAIEQNHDEYGIIWPISIAPFEIEIVSLDTRNKELVEFCDILYEQMKKE 498

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G +    DL+G P++VIVG K     +VE+  R    ++ +  +EV+
Sbjct: 499 GFDVLYDDRDERAGIKLNDMDLIGIPIRVIVGKKAFEKGEVEVSLRRDRQKQSVEKDEVL 558


>gi|242373554|ref|ZP_04819128.1| prolyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348917|gb|EES40519.1| prolyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 567

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 159/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNE 226



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF++ LI I       R+   ++Y++L+    DV +DD  E+ G +F  ADL+
Sbjct: 462 IWPKSVTPFELHLITINPKKDEQRELGNQLYSQLNG-RYDVLYDDRQERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+V+VG K   +  VE+K RL G  ED+ ++++ NY    + N
Sbjct: 521 GLPLRVVVG-KRAGEGIVEVKQRLNGESEDVHIDDLENYLKSLYEN 565


>gi|146295842|ref|YP_001179613.1| prolyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166980111|sp|A4XHN7|SYP_CALS8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145409418|gb|ABP66422.1| prolyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 572

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 153/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P ++E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTMKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L   +LW ESGR+  +G EM ++ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRAGAQEVHMSALMPKELWEESGRWAVFGPEMFKIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  EG   SY KM+ +
Sbjct: 121 EVTSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDMNEEGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++ +C
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGSNSHEFMVPSSVGEAEIAYC 224



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 123/239 (51%), Gaps = 13/239 (5%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GP+G  LS E  + AD         K   +F + S  TD+   I   ++ +     +A 
Sbjct: 333 AGPVG--LSIE--IYADNE------VKYLKNFVVGSNKTDYH--IKNVNLSDFKVTKFAD 380

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             ++  + L       K    RGIEVGHIF  GTKY+   +  +    G+   + MG YG
Sbjct: 381 LRNITQDDLCPKCLSQKVTIERGIEVGHIFKLGTKYTEAFNCVYTDEKGEKKLMIMGCYG 440

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L K G +
Sbjct: 441 IGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNIKDEQQSKIAFEIYEDLQKKGVE 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  E+ G +F  ADL+G P +V +G K ++D ++E+++R T    ++ +E  + +
Sbjct: 501 VLIDDRDERAGVKFKDADLIGIPFRVTIGRK-IADGRIEVRNRRTKESVEVDIESAVEF 558


>gi|242242546|ref|ZP_04796991.1| prolyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233973|gb|EES36285.1| prolyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 567

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S +
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNE 226



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF I LI I    +  R   +++Y +L     D+ +DD  E+ G +F  +DL+
Sbjct: 462 IWPKSVTPFDIHLITINPKKEDQRTLGDQLYQKLMD-SYDILYDDRKERAGVKFNDSDLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P++V+VG K   +  VE+K R  G+ E++ ++E+  Y    F N
Sbjct: 521 GLPVRVVVG-KRAEEGIVEVKQRFNGLSEEVQIDELETYLQDLFKN 565


>gi|329724323|gb|EGG60835.1| proline--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 567

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S +
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNE 226



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF I LI I       R   +++Y +L     DV +DD  E+ G +F  +DL+
Sbjct: 462 IWPKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMD-SYDVLYDDRKERAGVKFNDSDLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P++V+VG K   +  VE+K R+ G+ E++ ++E+  Y    F N
Sbjct: 521 GLPVRVVVG-KRAEEGIVEVKQRINGLSEEVQIDELEYYLQDLFKN 565


>gi|27467857|ref|NP_764494.1| prolyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57866745|ref|YP_188412.1| prolyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251810694|ref|ZP_04825167.1| prolyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876305|ref|ZP_06285172.1| proline--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|293366773|ref|ZP_06613449.1| proline-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|81175026|sp|Q8CST7|SYP_STAES RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175027|sp|Q5HPS8|SYP_STAEQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27315402|gb|AAO04536.1|AE016747_33 proline-tRNA ligase [Staphylococcus epidermidis ATCC 12228]
 gi|57637403|gb|AAW54191.1| prolyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805854|gb|EES58511.1| prolyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295330|gb|EFA87857.1| proline--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|291319074|gb|EFE59444.1| proline-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736329|gb|EGG72601.1| proline--tRNA ligase [Staphylococcus epidermidis VCU028]
 gi|329736632|gb|EGG72898.1| proline--tRNA ligase [Staphylococcus epidermidis VCU045]
          Length = 567

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 158/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S +
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNE 226



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF I LI I       R   +++Y +L     DV +DD  E+ G +F  +DL+
Sbjct: 462 IWPKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMD-SYDVLYDDRKERAGVKFNDSDLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P++V+VG K   +  VE+K R+ G+ E++ ++E+  Y    F N
Sbjct: 521 GLPVRVVVG-KRAEEGIVEVKQRINGLSEEVQIDELEYYLQELFKN 565


>gi|332978157|gb|EGK14892.1| proline--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 576

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 123/269 (45%), Positives = 172/269 (63%), Gaps = 12/269 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LM+R G+I + + G+Y WLP+G K L  V  I+REE
Sbjct: 1   MRASQFLFATLKETPSDADIVSSQLMVRAGLIRKLASGLYVWLPMGLKVLQKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW ESGR++ YG E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQESGRFEDYGPELLRFTDRHNRDFVLGPTHEEVITDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFG+MR+REF MKDAYSF +     + +Y +M+ +
Sbjct: 121 ELRSYKQLPVTFFQIQGKFRDEIRPRFGIMRAREFTMKDAYSFHVDQASLEITYQQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A++G IGG  SHEF VLA +GE       D + F   S+ +D+ 
Sbjct: 181 YTRIFQRLGLTFRAVLADTGSIGGSASHEFHVLAGSGE-------DAIAF---SDGSDYA 230

Query: 241 DIISLNSIV--EQWTAPYAATSDVHNEKL 267
             + L   V  ++  AP     DV   K+
Sbjct: 231 ANVELAEAVCNDERAAPTQDRQDVATPKI 259



 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 8/188 (4%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K   +  RGIEVGHIF  G KYS  ++ T  G DGK   + MG YG
Sbjct: 389 DIRNVVEGDPSPDGKGTLSIKRGIEVGHIFQLGDKYSKALNCTVMGEDGKPVTLMMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE +HD  GIIW       DS+APF I+++ +K+ ++      E +Y  L
Sbjct: 449 IGVSRIIAAAIEQNHDDNGIIWAKTPNVNDSIAPFDIAIVPMKSKEETVMQTAEALYQEL 508

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E   R  G ++ +S E
Sbjct: 509 KAKGLNVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEEKYEYVDRRDGEKQLLSRE 568

Query: 433 EVINYASH 440
           EV+   S 
Sbjct: 569 EVLAKVSQ 576


>gi|254303428|ref|ZP_04970786.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323620|gb|EDK88870.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 567

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I     ++V  +  EKIY  L +   D   DD  E+ G +F  ADL
Sbjct: 461 IIWPVSIAPYIVDVIPANIKNEVQVNLAEKIYNELEEEKIDSMLDDRDEKPGFKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFP +V+VG K   +  VE+K R TG   ++S  EVI
Sbjct: 521 IGFPFKVVVG-KRADEGIVELKIRRTGETLEVSENEVI 557


>gi|312884352|ref|ZP_07744060.1| prolyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367982|gb|EFP95526.1| prolyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 571

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPSGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E  +P +Q  +LW E+GR +  G E+LRL DR+D+  +  PT EEV+T + R+
Sbjct: 61  INNAGAVETLMPVVQPFELWEETGRSEKMGAELLRLNDRHDRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYEAMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y R F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCRAFDRMGLNYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSSE 226



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 103/165 (62%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVAA IE +HD  GI 
Sbjct: 407 RGIEVGHIFQLGKNYSEKMNCGVLGPDGKNTILEMGCYGIGVTRVVAAAIEQNHDKFGIS 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            PD++APF+++++ +  H  +  + A E +Y  L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 LPDAIAPFQVAIVPMNMHKSEEVQQAAENLYRELTDLGVEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  V++G + + +   E K+R TG +E +++ +++ +  ++ +
Sbjct: 527 GIPHTVVIGDRSMKEGNFEYKNRRTGEKEAIAMADILGHLKNQLA 571


>gi|296329234|ref|ZP_06871735.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153590|gb|EFG94407.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 567

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+    GK  ++ MG YGIG  R +AA IE ++D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDEKGKTQFMLMGCYGIGVTRTMAASIEQNNDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I     ++V     EKIY  L +   DV  DD  E+ G +F  ADL
Sbjct: 461 IIWPVSIAPYIVDVIPANIKNEVQVSLAEKIYNELQEEKIDVMLDDRDEKPGFKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFP +V+VG K   +  VE+K R TG   ++S  EVI
Sbjct: 521 IGFPFKVVVG-KRADEGIVELKIRRTGETLEVSQNEVI 557


>gi|148652560|ref|YP_001279653.1| prolyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048509|sp|A5WDG2|SYP_PSYWF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148571644|gb|ABQ93703.1| prolyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 576

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LMLR G+I + + G+Y WLP+G K L  V  I+REE
Sbjct: 1   MRASQFLFATLKETPSDADIVSSQLMLRAGLIRKLASGLYVWLPMGLKVLQKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P  Q A+LW ESGR++ YG E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MQNIGGQEVLMPMTQPAELWQESGRFEDYGPELLRFTDRHNRDFVLGPTHEEVITDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFG+MR+REF MKDAYSF +     + +Y +M+ +
Sbjct: 121 ELRSYKQLPVTFFQIQGKFRDEIRPRFGIMRAREFTMKDAYSFHVDQASLEVTYQQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    + A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YTRIFQRLGLNFRAVLADTGSIGGSASHEFHVLAGSGEDAIAFS 224



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 8/187 (4%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D+ P+ K   +  RGIEVGHIF  G KYS  ++ T  G DGK   + MG YG
Sbjct: 389 DIRNVVEGDASPDGKGTLSIKRGIEVGHIFQLGDKYSKALNCTVMGEDGKPVTLMMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE +HD  GIIW       DS+APF I+++ +K+ +       E +Y  L
Sbjct: 449 IGVSRIIAAAIEQNHDDNGIIWAKTPDIKDSIAPFDIAIVPMKSKEDTVMQTAEALYEEL 508

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E   R  G ++ +S E
Sbjct: 509 KARGLNVILDDRNERPGVKFADLELIGIPHRIVVSDRNLAEDKYEYVDRRDGEKQLLSRE 568

Query: 433 EVINYAS 439
           E++   S
Sbjct: 569 ELLAKVS 575


>gi|10438145|dbj|BAB15178.1| unnamed protein product [Homo sapiens]
          Length = 402

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 215/397 (54%), Gaps = 36/397 (9%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ML+ G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  A+LW  + R
Sbjct: 1   MLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVNMPSLSPAELWQATNR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELR 144
           +D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LPF  YQ+  KFRDE R
Sbjct: 61  WDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQVTRKFRDEPR 120

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LGL  + ++A+ G IGG
Sbjct: 121 PRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLGLPFVKVQADVGTIGG 180

Query: 205 DLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +SHEF +  D GE ++  C +        S N +  D+  +N    Q   P   T    
Sbjct: 181 TVSHEFQLPVDIGEDRLAICPRCSF-----SANMETLDLSQMNCPACQ--GPLTKT---- 229

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                           +GIEVGH FY GTKYS   +A F    GK    +MG YG+G  R
Sbjct: 230 ----------------KGIEVGHTFYLGTKYSSIFNAQFTNVCGKPTLAEMGCYGLGVTR 273

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLS----KVGC 377
           ++AA IE       + WP  +AP++  LI  K  + +Q   +   ++Y  ++    ++  
Sbjct: 274 ILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQLYDHITEAVPQLHG 333

Query: 378 DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +V  DD     IG++   A+  G+P  +I G + + D
Sbjct: 334 EVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALED 370


>gi|297587908|ref|ZP_06946552.1| proline--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297574597|gb|EFH93317.1| proline--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 576

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/235 (48%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPVTQPREIWEESGRWKTFGPEMFKLQDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+D+Y+FD+  E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMEDSYTFDVDEEAMREAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGEG-VICYSDDSDFAATDE 234



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 96/156 (61%), Gaps = 5/156 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG+IF  G KYS  M+ATF   +GK+ +  MGSYGIG  R V+A++E +HD KG+I
Sbjct: 403 RGIEVGNIFQLGQKYSKSMNATFLDENGKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMI 462

Query: 340 WPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP  VAP+   I+++N K  +Q      EK+Y +L   G +V  DD  E++G +F   DL
Sbjct: 463 WPLVVAPYHVIITIVNTKNDEQ--NTLAEKLYEKLLLQGVEVLLDDRKERVGVKFNDRDL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +G PL++ VG K   D  VE   R T    +MS +E
Sbjct: 521 IGIPLRITVGKKADEDI-VEFSERKTLENVEMSSQE 555


>gi|116327681|ref|YP_797401.1| prolyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122284523|sp|Q053M7|SYP_LEPBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116120425|gb|ABJ78468.1| Prolyl-tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 576

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 157/225 (69%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G+  + S G+Y +LPLG K L  +  IIREE
Sbjct: 1   MKASKYILPTEKENPSDAVVASHRLMIRAGLARKSSAGLYFYLPLGLKILQKIKQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNKTGALEFDLPILTPSDFWEQSGRWTAMGKEMFRIKDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 LLKSYKDLPLNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDVSLDETYQSMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCS 224
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  G ET + C+
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCN 225



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 106/198 (53%), Gaps = 10/198 (5%)

Query: 229 DFP--IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-NKRVSA-RGIEV 284
           DFP  + S   DF    +   ++E+  +     +DV   +  D  P  N  + A +GIEV
Sbjct: 352 DFPYVVASNKEDFH---TQGFVLEKEVSGLPEFADVALAREGDLCPNCNAPLKAEKGIEV 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  G KY+          +GK   + MG YGIG  R +A VIE  +D KGI WP S+
Sbjct: 409 GHIFKLGEKYTKAFGIQVLDQNGKARTLTMGCYGIGVNRTMATVIEQRNDEKGIFWPISI 468

Query: 345 APFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF+++L++I K  +Q  +   E+ Y  L     +VFWDD     G +   ++L+GFP++
Sbjct: 469 APFEVTLVSITKGEEQYSK--AEEFYNVLKNENLEVFWDDRDVGPGFKLKDSELIGFPIR 526

Query: 404 VIVGSKFVSDSKVEIKHR 421
           V +G KF  + ++ I +R
Sbjct: 527 VTIGKKFFENGEISIYNR 544


>gi|302379784|ref|ZP_07268268.1| proline--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302312372|gb|EFK94369.1| proline--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 576

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/235 (48%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPITQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVDEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGEG-VICYSDDSDFAATDE 234



 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG+IF  G KYS  M+ATF   +GK+ +  MGSYGIG  R V+A++E +HD KG+I
Sbjct: 403 RGIEVGNIFQLGQKYSKSMNATFLDENGKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMI 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAP+ + +  +   D+      EK+Y +L   G +V  DD  E+ G +F   DL+G
Sbjct: 463 WPLVVAPYHVIITIVNTKDEEQNTLAEKLYEKLLLQGVEVLLDDRKERAGVKFNDRDLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            PL++ VG K  ++  VE   R T    +MS  E
Sbjct: 523 IPLRITVGKK-AAEEIVEFSERRTLENVEMSSTE 555


>gi|223044242|ref|ZP_03614279.1| prolyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442392|gb|EEE48500.1| prolyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 567

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEESLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +
Sbjct: 181 YSKIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNE 226



 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNNDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF + LI I       R+  +++Y +L+    D+ +DD  E+ G +F  ADL+
Sbjct: 462 IWPKSVTPFDLHLITINPKKDDQRELGDQLYDQLNG-KFDILYDDRKERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P++V+VG K   +  VE+K RL+G  E++ + ++ NY    + N
Sbjct: 521 GLPMRVVVG-KRAEEGIVEVKQRLSGESEEIHVNDLENYLKDLYDN 565


>gi|19704979|ref|NP_602474.1| prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|81848323|sp|Q8RIE2|SYP_FUSNN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19712883|gb|AAL93773.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 567

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+    GK  ++ MG YGIG  R +AA IE ++D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDEKGKTQFMLMGCYGIGVTRTMAASIEQNNDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I     ++V     EKIY  L +   DV  DD  E+ G +F  ADL
Sbjct: 461 IIWPVSIAPYIVDVIPANIKNEVQVSLAEKIYNELQEEKIDVMLDDRDEKPGFKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFP +V+VG K   +  VE+K R TG   ++S  EVI
Sbjct: 521 IGFPFKVVVG-KRADEGIVELKIRRTGETLEVSQNEVI 557


>gi|253576294|ref|ZP_04853624.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844187|gb|EES72205.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 571

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 119/222 (53%), Positives = 151/222 (68%), Gaps = 1/222 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+   P L+E P DAE ASH+ +LR G I Q + GIYS+LPLG+K L  +  I+REE
Sbjct: 1   MRQSRLLSPTLREAPSDAEAASHQHLLRAGYIRQLAAGIYSYLPLGRKVLLRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW  SGRY+ YG E++R  DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRAGAQELLLPAMQPAELWQRSGRYERYGPELIRFKDRHDREFALGPTHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++R REFLMKDAYSFD    G   +Y  M  +
Sbjct: 121 EVNSYRQLPLTVYQIQTKFRDERRPRFGLLRGREFLMKDAYSFDTDWTGLDRAYQSMVSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQV 221
           Y +IF R GLK   + A+ G IGG+  +HEF+ LAD GE  V
Sbjct: 181 YEKIFRRCGLKFRAVEADPGTIGGEGGTHEFMALADIGEDVV 222



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 108/195 (55%), Gaps = 4/195 (2%)

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           L S+      P A+  D  N    D+ P   E +    RGIEVGH+F  GT+YS  + A 
Sbjct: 370 LRSVCPTRDVPEASIGDFRNVVNGDACPRCKEGRLQLLRGIEVGHVFKLGTRYSEQLGAV 429

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F  A G    + MG YGIG  R+++A+ E  HD  G+IWP S+AP+++ +I I   + + 
Sbjct: 430 FLDAQGHQQPMIMGCYGIGLSRLMSAIAEQHHDEHGLIWPVSIAPYQVHIIPISVTNPLQ 489

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++Y +L++ G DV  DD  E+ GS+F  ADL+G P +VI+G K     +VE   R
Sbjct: 490 MELALQLYEKLTQAGIDVLLDDRDERPGSKFHDADLIGIPYRVIIG-KSAEQGQVEWVER 548

Query: 422 LTGIREDMSLEEVIN 436
               RE +SLEE I 
Sbjct: 549 NIMKRELISLEEAIQ 563


>gi|114566427|ref|YP_753581.1| prolyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318501|sp|Q0AYJ4|SYP_SYNWW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114337362|gb|ABI68210.1| prolyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 570

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 160/226 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F P L+E P +AE+ SH+L+LR G I + + G+YS+LPL  + L  +  I+REE
Sbjct: 1   MKASELFFPTLREVPSEAEVLSHQLLLRAGFIRKATAGVYSYLPLANRVLKKIMNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW +SGR++ YG EM RL DR+++    GPTHEE++T +  +
Sbjct: 61  MDRAGGQEVILPIIQPAELWKKSGRWEVYGDEMFRLKDRHNRDFALGPTHEEIITTLVDA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ K+RDE+RPRFG+MR REF+MKD YSFD+  EG   SY+KM+ +
Sbjct: 121 DVHSYRHLPLLLYQIQNKYRDEIRPRFGLMRGREFIMKDLYSFDIDEEGLDISYHKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RL L+   + A+SG IGG+ SHEF+VLA+ GE ++   K+
Sbjct: 181 YNRIFQRLKLQYRVVEADSGAIGGNESHEFMVLAENGEAEIVYCKN 226



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 2/167 (1%)

Query: 257 AATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    DS P       S RGIEVGHIF  GTKYS  + A +    G++  + M
Sbjct: 378 AGINDIRNAVAGDSCPVCSAPLYSMRGIEVGHIFKLGTKYSEVLEANYLDQKGQEKPMVM 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +AA +E S D  GI+WP  + PF++ ++ + + ++    A   +Y    +
Sbjct: 438 GCYGIGISRTMAAAVEQSADENGIVWPLPITPFEVIIVPVNSKNEEQMQAAWSLYEEFKQ 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G +   DD  E+ G +F  ADL+G PL++ +G + + + +VE+K R
Sbjct: 498 EGLETIVDDRDERAGVKFKDADLIGIPLRITIGPRSLQEKQVEVKKR 544


>gi|297545340|ref|YP_003677642.1| prolyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843115|gb|ADH61631.1| prolyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 570

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 156/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  IIREE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+ KM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFEKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  + +C
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSVGEAVIAYC 224



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE +HD KGII
Sbjct: 405 RGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIVMGCYGIGINRTVAAIIEQNHDDKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F  ADLLG
Sbjct: 465 WPMSVAPYHVIIVPVNVSNEAQNGVAEDIYAALQKEGIEVLIDDRDLRAGVKFNDADLLG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P+++ VG K VSD  VEIK R     E++ + +V+
Sbjct: 525 IPIRITVGKK-VSDGIVEIKLRENEEAEEVKISDVV 559


>gi|302876555|ref|YP_003845188.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307687227|ref|ZP_07629673.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302579412|gb|ADL53424.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 566

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 119/225 (52%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  ++E P +AEI+SH+LMLR G++ + + G+Y+++P+G KAL  V  IIR+E
Sbjct: 1   MKLSKALMLTMREVPAEAEISSHQLMLRAGLMRKMASGVYNYMPMGLKALKKVEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E     L  A+LW ESGR+D+ G EM RL DRND+    GPTHEEV TDI R+
Sbjct: 61  MDKAGAQEFLASALIPAELWKESGRWDTMGPEMFRLKDRNDRDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   EG   SYN M+ +
Sbjct: 121 EIKSYKQLPITLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDSEGLDISYNAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y  IF R  ++     A+SG +GG  S EF+V ++ GE   VFCS
Sbjct: 181 YKNIFFRCDIECKAAEADSGAMGGSGSAEFMVKSEVGEDDIVFCS 225



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 1/164 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  GTKYS  M+A F   DG      MG YGIG  R +AAVIE  +D  GI
Sbjct: 401 ARGIEVGHIFKLGTKYSESMNAVFTDQDGTQKPFIMGCYGIGVNRTLAAVIEQHNDENGI 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  VAP+++ ++     D+V     E++Y  L  +G DV  DD  E+ G +F  ADLL
Sbjct: 461 IWPLEVAPYQVIVVPAVFKDEVQMKKAEELYDALKAIGVDVILDDRNERAGIKFKDADLL 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++ VG K +++ +VE K R +   E ++ ++VI+     F
Sbjct: 521 GIPMRITVGKK-IAEGEVEFKLRSSADLEVIAYDKVIDRVKEEF 563


>gi|116330596|ref|YP_800314.1| prolyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281649|sp|Q04U64|SYP_LEPBJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116124285|gb|ABJ75556.1| Prolyl-tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 576

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 157/225 (69%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G+  + S G+Y +LPLG K L  +  IIREE
Sbjct: 1   MKASKYILPTEKENPSDAVVASHRLMIRAGLARKSSAGLYFYLPLGLKILQKIKQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNKTGALEFDLPILTPSDFWEQSGRWTAMGKEMFRIKDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 LLKSYKDLPLNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDVSLDETYQSMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCS 224
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  G ET + C+
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCN 225



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 106/198 (53%), Gaps = 10/198 (5%)

Query: 229 DFP--IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-NKRVSA-RGIEV 284
           DFP  + S   DF    +   ++E+  +     +DV   +  D  P  N  + A +GIEV
Sbjct: 352 DFPYVVASNKEDFH---TQGFVLEKEVSGLPEFADVALAREGDLCPNCNAPLKAEKGIEV 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  G KY+          +GK   + MG YGIG  R +A VIE  +D KGI WP S+
Sbjct: 409 GHIFKLGEKYTKAFGIQVLDQNGKARTLTMGCYGIGVNRTMATVIEQRNDEKGIFWPISI 468

Query: 345 APFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF+++L++I K  +Q  +   E+ Y  L     +VFWDD     G +   ++L+GFP++
Sbjct: 469 APFEVTLVSITKGEEQYSK--AEEFYNVLKNENLEVFWDDRDVGPGFKLKDSELIGFPIR 526

Query: 404 VIVGSKFVSDSKVEIKHR 421
           V +G KF  + ++ I +R
Sbjct: 527 VTIGKKFFENGEISIYNR 544


>gi|254521784|ref|ZP_05133839.1| prolyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219719375|gb|EED37900.1| prolyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 567

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQVFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQ+Q KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQVQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVFS 224



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 92/166 (55%), Gaps = 4/166 (2%)

Query: 259 TSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+ N +  D +L   +   ARGIEVGH+F  G  Y+  + AT    +GK   + MG Y
Sbjct: 384 VADIRNVRAGDRALDGGELKIARGIEVGHVFQLGRTYAKALDATVLDENGKAAVMAMGCY 443

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKV 375
           GIG  RVVAA IE +HD  GIIWPD++AP++  + +IN K    V  DA   +   L   
Sbjct: 444 GIGISRVVAAAIEQNHDDAGIIWPDAMAPWQVVVCVINPKGDAAV-ADAAASLLQELRDA 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G D   DD G + G+ FA  +L+G P +V+V  + ++    E + R
Sbjct: 503 GLDAALDDRGLRPGAMFADMELIGIPHRVVVSERGLAAGTYEYRSR 548


>gi|241895744|ref|ZP_04783040.1| prolyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241870787|gb|EER74538.1| prolyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 570

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SH++MLR G + Q + G+Y++LPL Q+ L+ +NAIIREE
Sbjct: 1   MKQSKVFIPTLRETPADAEVISHQMMLRAGYVRQVTAGVYAYLPLAQRVLNKINAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEM+ P L  A+LW ESGRY++YG  + +L +R+ + MI GPTHEE MT + R 
Sbjct: 61  MEKIDAIEMTAPVLLPAELWEESGRYETYGPNLFKLKNRHGRDMILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K RDE RPRFGV+R REF+MKDAYSF +   G   +Y KM  +
Sbjct: 121 DIKSYKRLPLTLYQIQTKLRDEDRPRFGVLRGREFIMKDAYSFSIDEAGLDDAYKKMETA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y+ IF R+GL    +  ++G +GG  S EF   A  GE  +  S +
Sbjct: 181 YVNIFDRVGLNYRVIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSDE 226



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 1/142 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GT+YS  M A    A+G+   V MGSYGIG  R++AA+ E + D  G+ 
Sbjct: 404 KGIEVGHIFKLGTRYSKSMGAQVLDANGRQADVIMGSYGIGVSRLLAAIAEQNADEHGLS 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAP+ + L+ IK  D+      + +   L   G +V  DD  E+ G +FA +DL+G
Sbjct: 464 WPAAVAPWDVHLVPIKYKDETQAKLTDDLNESLVAAGYEVLVDDRNERPGVKFADSDLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
            P++V VG K  SD  VE+K R
Sbjct: 524 LPVRVTVGKK-ASDGIVEVKLR 544


>gi|126697615|ref|YP_001086512.1| prolyl-tRNA synthetase [Clostridium difficile 630]
 gi|255099207|ref|ZP_05328184.1| prolyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255304990|ref|ZP_05349162.1| prolyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|123174666|sp|Q18CD2|SYP1_CLOD6 RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|115249052|emb|CAJ66863.1| Prolyl-tRNA synthetase [Clostridium difficile]
          Length = 571

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEIPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE + VFCS
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSAEFMVKSEVGEDEVVFCS 225



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 93/145 (64%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+EVGHIF  GTKYS  M+A F   DGK   + MG YGIG  R  AA+IE  +D KGI
Sbjct: 401 ARGVEVGHIFKLGTKYSESMNANFIDKDGKSKPIVMGCYGIGVERTAAAIIEQHNDEKGI 460

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP SVAP+ + ++  N+K  +Q+     E IY  L  +G +V  DD  E+IG +F  ++
Sbjct: 461 IWPLSVAPYHVVIVPANMKNEEQI--SIAENIYNDLQAMGVEVLLDDRDERIGVKFNDSE 518

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P+++ VG K +++ KVE K R
Sbjct: 519 LIGIPMRITVG-KNINEGKVEFKLR 542


>gi|255654136|ref|ZP_05399545.1| prolyl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296449825|ref|ZP_06891592.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296877889|ref|ZP_06901909.1| proline--tRNA ligase [Clostridium difficile NAP07]
 gi|296261312|gb|EFH08140.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296431086|gb|EFH16913.1| proline--tRNA ligase [Clostridium difficile NAP07]
          Length = 571

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEVPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE + VFCS
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSTEFMVKSEVGEDEVVFCS 225



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 94/145 (64%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+EVGHIF  GTKYS  M+A F   DGK   + MG YGIG  R  AA+IE  +D KGI
Sbjct: 401 ARGVEVGHIFKLGTKYSESMNANFIDRDGKSKPIVMGCYGIGVERTAAAIIEQHNDEKGI 460

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP SVAP+ + ++  N+K  +Q+     EKIY  L  +G +V  DD  E+IG +F  ++
Sbjct: 461 IWPLSVAPYHVVIVPANMKNEEQI--SIAEKIYNDLQAMGVEVLLDDRDERIGVKFNDSE 518

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P+++ VG K +++ KVE K R
Sbjct: 519 LIGIPMRITVG-KNINEGKVEFKFR 542


>gi|190572717|ref|YP_001970562.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|226701342|sp|B2FMR5|SYP_STRMK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|190010639|emb|CAQ44248.1| putative prolyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 567

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQVFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQ+Q KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQVQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVFS 224



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 4/170 (2%)

Query: 255 PYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           P    +D+ N +  D +L   +   ARGIEVGH+F  G KY+  + AT    +GK   + 
Sbjct: 380 PEPEVADIRNVRAGDRALDGGELKIARGIEVGHVFQLGRKYAEALDATVLDENGKAAVMA 439

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
           MG YGIG  RVVAA IE +HD  GIIWPD++AP++  + +IN K    V  DA   +   
Sbjct: 440 MGCYGIGISRVVAAAIEQNHDDAGIIWPDAMAPWQVVVCVINPKGDAAV-ADAAASLLQE 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G D   DD G + G+ FA  +L+G P +V+V  + +     E + R
Sbjct: 499 LRDAGLDAALDDRGLRPGAMFADMELIGIPHRVVVSERGLGAGTYEYRSR 548


>gi|254973700|ref|ZP_05270172.1| prolyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091090|ref|ZP_05320568.1| prolyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255312745|ref|ZP_05354328.1| prolyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515506|ref|ZP_05383182.1| prolyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255648598|ref|ZP_05395500.1| prolyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|260681818|ref|YP_003213103.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685415|ref|YP_003216548.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
 gi|306518722|ref|ZP_07405069.1| prolyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|260207981|emb|CBA60132.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211431|emb|CBE01529.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 571

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEIPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE + VFCS
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSAEFMVKSEVGEDEVVFCS 225



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 93/145 (64%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+EVGHIF  GTKYS  M+A F   DGK   + MG YGIG  R  AA+IE  +D KGI
Sbjct: 401 ARGVEVGHIFKLGTKYSESMNANFIDKDGKSKPIVMGCYGIGVERTAAAIIEQHNDEKGI 460

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP SVAP+ + ++  N+K  +Q+     E IY  L  +G +V  DD  E+IG +F  ++
Sbjct: 461 IWPLSVAPYHVVIVPANMKNEEQI--SIAENIYNDLQAMGVEVLLDDRDERIGVKFNDSE 518

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P+++ VG K +++ KVE K R
Sbjct: 519 LIGIPMRITVG-KNINEGKVEFKLR 542


>gi|289579170|ref|YP_003477797.1| prolyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528883|gb|ADD03235.1| prolyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 570

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 156/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+ KM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFEKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  + +C
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSVGEAVIAYC 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE +HD KGII
Sbjct: 405 RGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIVMGCYGIGINRTVAAIIEQNHDDKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F  ADLLG
Sbjct: 465 WPMSVAPYHVIIVPVNVSNEAQNGVAEDIYAALQKEGIEVLIDDRDLRAGVKFNDADLLG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 525 IPIRITVGKK-VGDGIVEIKLRENEEAEEVKISDVV 559


>gi|260495035|ref|ZP_05815164.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260197478|gb|EEW94996.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 567

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERGFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDKEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 1/159 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+    G+ HY+ MG YGIG  R +AA IE  +D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDEKGQSHYMLMGCYGIGVTRTMAAAIEQYNDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I +   ++   +  EKIY  L +   DV  DD  E+ G +F  ADL
Sbjct: 461 IIWPVSIAPYIVDVIPVNIKNEAQVNLAEKIYNNLQEEKIDVMLDDRDEKPGFKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +GFP +V+VG K   + +VE+K R TG   ++S  E+IN
Sbjct: 521 IGFPFKVVVGKK-AEEGRVELKIRKTGETFEISQNEIIN 558


>gi|312623109|ref|YP_004024722.1| prolyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203576|gb|ADQ46903.1| prolyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 572

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 154/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDKSGAQEVHMSALMPKELWEESGRWAVFGPEMFRVKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDVDEKGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++ +C
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYC 224



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 13/237 (5%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPIG  ++    V AD         K   +F + +  TD+   I   ++ +     +A 
Sbjct: 333 AGPIGLSIN----VYADNE------VKYLKNFVVGANKTDYH--IKNVNLSDFKVTKFAD 380

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             ++  + L       K    RGIEVGHIF  GTKY+   +  +    G+   + MG YG
Sbjct: 381 LRNITQDDLCPKCCSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCYG 440

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L + G +
Sbjct: 441 IGINRTAAAIIEQMHDEDGIIWPITVAPYEVIIVPVNVKDENQNRIAFEIYENLQRNGVE 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           V  DD  E+ G +F  ADL+G P +V VG K +S+ K+EI++R T    ++ +E+ I
Sbjct: 501 VLIDDRDERAGVKFKDADLIGIPFRVTVGKK-ISEGKLEIRNRRTKESFEVEIEKAI 556


>gi|70726652|ref|YP_253566.1| prolyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|114152257|sp|Q4L5W5|SYP_STAHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68447376|dbj|BAE04960.1| proline-tRNA ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 566

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 111/225 (49%), Positives = 158/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  ++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTRRDVPAEAEALSHQLLLKAGLIKQSTSGIYSYLPLASRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S+
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSE 225



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 100/166 (60%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GI
Sbjct: 402 AEGIEVGQVFKLGTKYSEAMNATFLDNQGKAKPLIMGCYGIGVSRTLSAIVEQNNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SV PF + LI I        +  +++Y  L +   DV +DD  ++ G +F  ADL+
Sbjct: 462 IWPKSVTPFDLHLITINPKKDEQLELGDQLYKELQQ-QYDVLYDDRKDRAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P++++VG K  S+  VE+K R TG  E++ + ++  + +  +SN
Sbjct: 521 GLPIRIVVG-KNASEGIVEVKVRQTGESEEVHINDLNTHIATLYSN 565


>gi|193661987|ref|XP_001946406.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 433

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 149/427 (34%), Positives = 222/427 (51%), Gaps = 34/427 (7%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           S KLML  G+I Q + G+Y  LPL Q++LD +  II +     GA ++S+P L  ++LW 
Sbjct: 29  SQKLMLELGIIRQSANGLYHLLPLAQRSLDKLIFIINKNMMDIGAQKISMPVLIHSNLWK 88

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           ++GR +   +++  + DR  K  +  PTHEEV+TD+F S  K+Y+ LP   YQ+  KFRD
Sbjct: 89  KTGRLNKNIEDLYLVNDRKSKEFLLSPTHEEVVTDLFSSDPKTYKQLPLMLYQVGTKFRD 148

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RP+ G++RS+EFLMKD YSFD     +  +YNK+  +Y +IF  +G+K I +   SG 
Sbjct: 149 EIRPKLGIIRSKEFLMKDLYSFDRDQTSATFTYNKVCQAYEKIFKHIGVKFIRVEGASGM 208

Query: 202 IGGDLSHEFIVLADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           +GG+ SHEF   A+ G +T + C K    F +  E +            E    P  +++
Sbjct: 209 MGGNQSHEFHYPAEVGDDTLLQCKK--CGFGMNKEMSP-----------ESVQCPKCSST 255

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           D+   K               IEVGH F+ GT YS  +SAT+   DG      M SYG+G
Sbjct: 256 DIEFTK--------------AIEVGHTFHLGTFYSSALSATYSDTDGTMKPPYMCSYGLG 301

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCRDACEKIYARLSKV-G 376
             R++ A +E       I WP S++PF I +I  K     +    +    +Y   +++ G
Sbjct: 302 VSRIIGASVECLSTQDVIQWPRSISPFTICIIPAKEGSIEENASLNNVHSLYNHFTEIFG 361

Query: 377 CDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKF-VSDSKVEIKHRLTGIREDMSLEEV 434
            D+  DD     IG +   A  LGFP  V++G K   + S  E+    T   E   L  +
Sbjct: 362 DDIIVDDRTHMTIGKRLIEAKKLGFPFVVVMGKKMNETPSLYELYEANTNKSEHYELSNL 421

Query: 435 INYASHR 441
           INY   +
Sbjct: 422 INYLKQQ 428


>gi|237742688|ref|ZP_04573169.1| prolyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229430336|gb|EEO40548.1| prolyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 567

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKVMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I     ++V     EKIY  L +   D   DD  E+ G +F  ADL
Sbjct: 461 IIWPVSIAPYTVDVIPANIKNEVQVSLAEKIYNELEEEKIDAMLDDRDEKPGFKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFP +++VG K   +  VE+K R TG   ++S  EVI
Sbjct: 521 IGFPFKIVVG-KRADEGIVELKIRRTGETLEISQNEVI 557


>gi|257453020|ref|ZP_05618319.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|257467420|ref|ZP_05631731.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 593

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 25  MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 85  MDRAGSQELLMPVLQPAELWQESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 145 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 205 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYS 248



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  + A++    G+   + MG YGIG  R +AA IE ++D  G
Sbjct: 427 SARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYGIGVGRTMAAAIEQNYDEHG 486

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+ + +I  NIK  +Q+     EKIY +L+    D   DD  E+ G +F  A
Sbjct: 487 IIWPSALAPYLVDVIPANIKNAEQM--QLAEKIYEQLNAEHLDAMLDDRDERPGFKFKDA 544

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DL+GFP +VI G K  +++ VE+K R TG   ++ ++E+I+
Sbjct: 545 DLIGFPFKVICGKK-AAENIVELKIRKTGETFEIPVDEIIS 584


>gi|315645695|ref|ZP_07898819.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315279173|gb|EFU42483.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 576

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 124/265 (46%), Positives = 166/265 (62%), Gaps = 10/265 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  +  IIR+E
Sbjct: 1   MRQSQLLMTTMRDMPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIEGIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDAAGAQEMLMPAVQPAELWKESGRYDVYGPELIRLHDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD   EG   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWEGLDVSYRSMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDF--------MDFP 231
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE  V   +D          +  
Sbjct: 181 YERIFERCGLTFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCRDCRYAANLERAESV 240

Query: 232 IPSENTDFDDI-ISLNSIVEQWTAP 255
           +P+     D + +  +S +E+   P
Sbjct: 241 VPARQGSVDSVKVDGDSAIERVVTP 265



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 2/168 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  GTKYS  M+  +  +DG++  + MG YGIG  RV+AA+ E    G+ ++
Sbjct: 409 RGIELGHVFKLGTKYSEVMNGMYLDSDGREKPLIMGCYGIGVSRVMAAIAEQRISGERLV 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL- 398
           WP SVAPF++ +I +   D+   +  E IY  L K G +   DD  E+ G +F  A+   
Sbjct: 469 WPMSVAPFQVHVIPVAVKDEAQMNLAEHIYKELIKAGLEPLLDDRDERAGVKFKDAESRH 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P ++I+G +  +  +VE      G++ ++     I  A    +  R
Sbjct: 529 GAPQRLIIG-RGAASGEVEWDRVEDGVKVNLPAAAAIQRACEAAARVR 575


>gi|315918544|ref|ZP_07914784.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059560|ref|ZP_07924045.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313685236|gb|EFS22071.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313692419|gb|EFS29254.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 569

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 61  MDRAGSQELLMPVLQPAELWQESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYS 224



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  + A++    G+   + MG YGIG  R +AA IE ++D  G
Sbjct: 403 SARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYGIGVGRTMAAAIEQNYDEHG 462

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+ + +I  NIK  +Q+     EKIY +L+    D   DD  E+ G +F  A
Sbjct: 463 IIWPSALAPYLVDVIPANIKNAEQM--QLAEKIYEQLNAEHLDAMLDDRDERPGFKFKDA 520

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DL+GFP +VI G K  +++ VE+K R TG   ++ ++E+I+
Sbjct: 521 DLIGFPFKVICGKK-AAENIVELKIRKTGETFEIPVDEIIS 560


>gi|237743345|ref|ZP_04573826.1| prolyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229433124|gb|EEO43336.1| prolyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 567

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 1/159 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+    G+ HY+ MG YGIG  R +AA IE  +D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDEKGQSHYMLMGCYGIGVTRTMAAAIEQYNDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I +   ++   +  EKIY  L +   DV  DD  E+ G +F  ADL
Sbjct: 461 IIWPVSIAPYIVDVIPVNIKNEAQVNLAEKIYNNLQEEKIDVMLDDRDEKPGFKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +GFP +V+VG K   +  VE+K R TG   ++S  E+IN
Sbjct: 521 IGFPFKVVVGKK-AEEGIVELKIRKTGETFEISQNEIIN 558


>gi|309389227|gb|ADO77107.1| prolyl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 568

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 159/225 (70%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK +LP L+E+P +A++ SH+LMLR GM+ +H+ GIYS+LPLG K +  +  I R+ 
Sbjct: 1   MRMSKLYLPTLKEDPAEADVISHQLMLRAGMMRKHASGIYSYLPLGYKVIKKIEKIARKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + + A E+ +P +Q + +W +S R+D +G  M++  DR ++    GPTHEEV+TD+ R 
Sbjct: 61  MDNSEAQEVLLPIMQDSQIWKDSKRWDKFGPLMIKFNDRKNREFCLGPTHEEVVTDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQIQ K RDE+RPRFGVMR REF+MKDAYS D+   G   SY  M+ +
Sbjct: 121 EVRSYKDLPLNLYQIQTKVRDEIRPRFGVMRGREFIMKDAYSLDIDSAGLDKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y +IF   GL+++ + A++G +GG  SHEF+VLAD+GE ++ FC+
Sbjct: 181 YEKIFAECGLEAVSVEADTGAMGGKDSHEFMVLADSGEDEIAFCN 225



 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M A +   +GK   + MGSYGIG  R+VAA IE ++D  GI W
Sbjct: 404 GIEVGHIFKLGTKYSENMDANYLDENGKAQPIVMGSYGIGITRLVAAAIEQNNDQYGIKW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++AP++I ++ +   D+V +   E IY  L   G +V  DD  E+ G +F  ++L+G 
Sbjct: 464 PKAIAPYQIIILPLGNDDEV-QTKSEAIYQDLKAKGWEVLIDDRKERAGVKFNDSELIGI 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           PL++ +GS+ + +  VE   R   ++ ++ LE++
Sbjct: 523 PLRLTIGSRSLKNGVVEAMTRENNMKTEIELEQL 556


>gi|256846083|ref|ZP_05551541.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256719642|gb|EEU33197.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 567

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 2/178 (1%)

Query: 259 TSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   K+ ++ +   K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG Y
Sbjct: 381 VTDIRTAKVGENCITGGKLYSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V     EKIY  L +   
Sbjct: 441 GIGVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEVQVSLAEKIYNELEEEKI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D   DD  E+ G +F  ADL+GFP +V+VG K   +  VE+K R TG   ++   E+I
Sbjct: 501 DTMLDDRDEKPGFKFKDADLIGFPFKVVVG-KRADEGIVELKIRRTGETLELPQNEII 557


>gi|294784787|ref|ZP_06750075.1| proline--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294486501|gb|EFG33863.1| proline--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 567

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKVMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I     ++V     EKIY  L +   D   DD  E+ G +F  ADL
Sbjct: 461 IIWPVSIAPYTVDVIPANIKNEVQVSLAEKIYNELEEEKIDAMLDDRDEKPGFKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFP +++VG K   +  VE+K R TG   ++   E+I
Sbjct: 521 IGFPFKIVVG-KRADEGIVELKIRRTGETLELPQNEII 557


>gi|256028463|ref|ZP_05442297.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289766384|ref|ZP_06525762.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289717939|gb|EFD81951.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 567

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 1/159 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+    G+ HY+ MG YGIG  R +AA IE  +D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDEKGQSHYMLMGCYGIGVTRTMAAAIEQYNDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I +   ++   +  EKIY  L +   DV  DD  E+ G +F  ADL
Sbjct: 461 IIWPVSIAPYIVDVIPVNIKNEAQVNLAEKIYNNLQEEKIDVMLDDRDEKPGFKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +GFP +V+VG K   +  VE+K R TG   ++S  E+IN
Sbjct: 521 IGFPFKVVVGKK-AEEGIVELKIRKTGETFEISQNEIIN 558


>gi|205373425|ref|ZP_03226229.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 494

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG++ L  V  IIREE
Sbjct: 1   MKQSMTFIPTLRETPADAEIKSHQLLLRAGFMKQNTSGIYSFLPLGKRVLAKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P LQ A+LW ESGR+ +YG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MENAGVVEMFMPALQQAELWQESGRWYTYGSELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ K+RDE RPRFG++R REF+MKDAYSF  + E    +Y+++F +
Sbjct: 121 DVKSYKKLPLSLYQIQTKYRDEARPRFGLLRGREFIMKDAYSFHASKESLDETYDRIFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S
Sbjct: 181 YSNIFERCGLNYRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYS 224



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 6/106 (5%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ K V   A+GIEVGH+F  GT+YS  M+AT    +GK  ++ MG YGIG  R +A
Sbjct: 389 DPSPDGKGVIKFAKGIEVGHVFKLGTRYSEAMNATVLDENGKAKHMIMGCYGIGVSRTLA 448

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           AV E  +D  G++WP+++AP+++ ++ +   +    D  +KI  R 
Sbjct: 449 AVAEQYNDENGLLWPENLAPYQVHIVPVNMKN----DETKKIRRRF 490


>gi|62126444|gb|AAX64147.1| proline tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 547

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/278 (44%), Positives = 174/278 (62%), Gaps = 24/278 (8%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  F+QIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRNELSSYKQLPLNFFQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y RIF R+GL    ++A++G IGG+
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSRIFSRMGLDFRAVQADTGSIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            SHEF VLA +GE  +            S+ +D+   I L   +   T   AAT ++   
Sbjct: 181 ASHEFQVLAQSGEDDIVF----------SDVSDYAANIELAEAIAPQTPRAAATQEM--- 227

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L D+   N +  A  +E         +++LP+  T K
Sbjct: 228 TLVDT--PNAKTIAELVE---------QFNLPIEKTVK 254



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 359 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 418

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 419 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 478

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 479 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGKKSLIKTGDIV 538

Query: 436 NY 437
           +Y
Sbjct: 539 DY 540


>gi|257462679|ref|ZP_05627088.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 593

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 25  MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 85  MDRAGSQELLMPVLQPAELWRESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 145 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 205 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYS 248



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 99/160 (61%), Gaps = 5/160 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  + A++    G+   + MG YGIG  R +AA IE ++D  G
Sbjct: 427 SARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYGIGVGRTMAAAIEQNYDENG 486

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+ + +I  NIK  +Q+     E+IY  L+K   D   DD  E+ G +F  A
Sbjct: 487 IIWPTALAPYLVDVIPANIKNTEQM--KLAEEIYENLNKEHLDAMIDDRDERPGFKFKDA 544

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DL+GFP ++I G K  +++ VE+K R TG   ++S +EVI
Sbjct: 545 DLIGFPFKIICGKK-AAENIVELKIRKTGETLEVSADEVI 583


>gi|187251094|ref|YP_001875576.1| prolyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|226701286|sp|B2KCB2|SYP_ELUMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|186971254|gb|ACC98239.1| Prolyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 573

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/221 (51%), Positives = 149/221 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++Y+LP L+E P+DA+  S KLMLR G+I + + GIY WLPLG K L  V  I+REE
Sbjct: 1   MKLTQYYLPTLKEAPKDADTISAKLMLRAGLIRKTASGIYEWLPLGLKVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q  +LW ESGR+  YGKE+LR+ DR      + PT EEV+TD+ R 
Sbjct: 61  MDAAGAHEVWLPLIQPKELWEESGRWTYYGKELLRIKDRKGAEFCFAPTAEEVITDVVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ   KFRDE+RPRFGVMR+REF MKDAYSF  T E     Y K F +
Sbjct: 121 DVTSYKQLPVALYQFASKFRDEIRPRFGVMRAREFYMKDAYSFHATEESINEWYLKFFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y ++  R G K   + A++G IGG+ SHEF+VLADTGE ++
Sbjct: 181 YKKVCTRCGFKFKAVEADTGAIGGNFSHEFMVLADTGENEI 221



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH F  GTKYS  M A F   + K H   MG YGIG  R+VAA IE SHD  GII
Sbjct: 407 RGIEVGHTFKLGTKYSQSMKAEFLDENQKSHPFLMGCYGIGISRIVAAAIEQSHDENGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +APF I L++I    +   ++  + IY +L++ G +V  DD  E+ G +F  ADL+
Sbjct: 467 WPAPLAPFDIYLVSIDTDINPKVKEETDSIYNQLTQAGLNVLLDDRNERPGIKFKDADLI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLT 423
           G P ++++ S+ V   + E K R +
Sbjct: 527 GLPHRIVISSRTVETGEYEYKQRTS 551


>gi|254730107|ref|ZP_05188685.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 232

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 154/226 (68%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+LA+TGE+QV+C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  
Sbjct: 1   IILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAK 60

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +    +VSARGIEVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE
Sbjct: 61  VKPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIE 120

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD  GIIWP ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G+
Sbjct: 121 ASHDDAGIIWPKTIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGA 180

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +FA  DL+G P QVIVG + V+  +VE+K R TG R+ + ++  IN
Sbjct: 181 KFATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQSLGIKAAIN 226


>gi|317060327|ref|ZP_07924812.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686003|gb|EFS22838.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 569

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 61  MDRAGSQELLMPVLQPAELWRESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYS 224



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 99/160 (61%), Gaps = 5/160 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  + A++    G+   + MG YGIG  R +AA IE ++D  G
Sbjct: 403 SARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYGIGVGRTMAAAIEQNYDENG 462

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+ + +I  NIK  +Q+     E+IY  L+K   D   DD  E+ G +F  A
Sbjct: 463 IIWPTALAPYLVDVIPANIKNTEQM--KLAEEIYENLNKEHLDAMIDDRDERPGFKFKDA 520

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DL+GFP ++I G K  +++ VE+K R TG   ++S +EVI
Sbjct: 521 DLIGFPFKIICGKK-AAENIVELKIRKTGETLEVSADEVI 559


>gi|254285550|ref|ZP_04960514.1| prolyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|150424412|gb|EDN16349.1| prolyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R +G +E +++  +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMASIIDFIQAKLA 571


>gi|153802043|ref|ZP_01956629.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124122402|gb|EAY41145.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|297581262|ref|ZP_06943186.1| prolyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297534578|gb|EFH73415.1| prolyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R +G +E +++  +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMASIIDFIQTKLA 571


>gi|229525492|ref|ZP_04414897.1| prolyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229339073|gb|EEO04090.1| prolyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|327483617|gb|AEA78024.1| Prolyl-tRNA synthetase Bacterial type [Vibrio cholerae LMA3894-4]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R +G +E +++  +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMASIIDFIQAKLA 571


>gi|254225105|ref|ZP_04918719.1| prolyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125622492|gb|EAZ50812.1| prolyl-tRNA synthetase [Vibrio cholerae V51]
          Length = 571

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R +G +E +++  +I++   + +
Sbjct: 527 GVPHTLIIGDRSMDEGHFEYKNRRSGEKEAVAMASIIDFIHAKLA 571


>gi|221194513|ref|ZP_03567570.1| prolyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185417|gb|EEE17807.1| prolyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 571

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ S  + P L+E+P +A +ASH+L+LR GMI + + G+YS+LPL  ++L  +  IIR+E
Sbjct: 5   VKMSSLYAPTLKEDPAEAVLASHRLLLRAGMIRKTAAGLYSYLPLAWRSLRKIEEIIRDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ VP L  A+LW ESGR+D YG E++RL DR+++    GPTHEE  TD+ R+
Sbjct: 65  MDGIGAQEILVPILTPAELWEESGRWDVYGPELMRLHDRHERKFALGPTHEETFTDLVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E  +  Y+    +
Sbjct: 125 ELKSYKQLPVTLYQIQDKFRDEMRPRFGLMRGREFIMKDAYSFSSTQESLQECYDAEKGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RI  R G++++P+ A+SG IGGD S EF+ LAD GE   V+C
Sbjct: 185 YARICERTGIRALPVIADSGQIGGDTSVEFMALADAGEAALVYC 228



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 99/168 (58%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEV  +F  GTKYS  + ATF   DG +    MG YGIG  R++AAV+E  +D  GI
Sbjct: 402 ARGIEVSQVFQLGTKYSEALGATFTAEDGTEQPFLMGCYGIGVSRLLAAVVEQHNDEHGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  VAP+++ ++ +   D       +++     + G +   DD  E+ G +FA ADL+
Sbjct: 462 IWPVCVAPYEVEIVPLSVGDDTVWPVAKQLADSFVEAGLETVVDDRDERPGVKFADADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P QVIVG + V++   E+K+R TG R D++L+EV  +   R +  R
Sbjct: 522 GLPWQVIVGKRGVANGVAEVKNRETGERVDVALDEVAAWLVSRIAPLR 569


>gi|284048708|ref|YP_003399047.1| prolyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952929|gb|ADB47732.1| prolyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 571

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 155/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P +A I SHKLMLR G I + + G+YS+LPL  ++L  +  IIREE
Sbjct: 1   MRVSQLYAPTLREVPAEAVIESHKLMLRAGYIRKVAGGLYSYLPLAWRSLRKIEEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              TGA E+ +P +Q +++W ESGR+ +YG EM +L DR+ +    GPTHEE++T + R 
Sbjct: 61  MVPTGAQEIMMPIVQPSEIWQESGRWPAYGAEMFKLKDRHGRDFCLGPTHEELVTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T YQIQ KFRDE RPRFG+MRSREF+MKDAYSFD   EG   SY   + +
Sbjct: 121 DLRSYRQLPVTLYQIQSKFRDEKRPRFGLMRSREFIMKDAYSFDKDAEGLDKSYQDEYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RIF R GL   P+ A+SG IGG  SHEF+ LAD+GE   V+C
Sbjct: 181 YSRIFTRCGLDYRPVEADSGAIGGKGSHEFMALADSGEAGIVYC 224



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 2/179 (1%)

Query: 256 YAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y   +D+      D  P  +     ARGIEVG +F   TKYS  + AT+   DGK+H + 
Sbjct: 378 YTQVADISTAVAGDKCPHCDGHLKEARGIEVGQVFKLNTKYSEALHATYLDVDGKEHPLV 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R +AA IE  HD  GII P ++AP+++ ++ +   D+       +I+  L+
Sbjct: 438 MGCYGIGVGRTLAAAIEQHHDKDGIIMPRNIAPYQVMVLAMNVKDEESWQKAVEIHDALN 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G D   DD  E+ G +F  ADL+G PL++++G K +  + +E K R  G   D+S E
Sbjct: 498 QAGIDTLLDDRDERAGVKFKDADLIGCPLRIVIGPKTMKRNAMETKLRCNGEMADVSFE 556


>gi|323142328|ref|ZP_08077160.1| proline--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413212|gb|EFY04099.1| proline--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 569

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 158/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +AEI SH+L+LR G + + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKVSKMYAPTLREVPSEAEIPSHQLLLRAGFMRKSTNGMYTYLPLAWRVIKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ESGR+D+YG EM+RL DR+      GPTHEE++T + ++
Sbjct: 61  MDHAGCQEIMMPIMQPAEIWKESGRWDAYGAEMVRLKDRHGHEYCLGPTHEEMVTTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE RPRFG+MRSR+F+MKD YSFD    G   SY  M+ +
Sbjct: 121 DVRSYRQLPLNLYQIQDKFRDERRPRFGLMRSRDFIMKDGYSFDRDEAGLDVSYKAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y +IF R GL   P+ A+SG IGG  SHEF+VLAD+GE ++ +C+K
Sbjct: 181 YDKIFTRCGLNFRPVEADSGAIGGTGSHEFMVLADSGEAEITYCTK 226



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 91/146 (62%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE G +F   TKYS  M  T+   +GK+  + MG YGIG  R +AA +E SHD  G+
Sbjct: 402 ARGIEAGQVFKLHTKYSAAMKCTYLDENGKEQPMVMGCYGIGVGRTMAACVEQSHDADGM 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++AP+++ ++ +   D+      EKIY  L K G +V  DD  E+ G +F  ADL+
Sbjct: 462 IWPVAIAPYEVLVVPVNVKDEASFAKAEKIYNELHKAGVEVVIDDRKERPGVKFKDADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G+PL+V+VG K +   ++E+K R TG
Sbjct: 522 GYPLRVVVGPKTLQTGELEVKVRKTG 547


>gi|169830802|ref|YP_001716784.1| prolyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
 gi|226699139|sp|B1I2J1|SYP_DESAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169637646|gb|ACA59152.1| prolyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
          Length = 566

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 161/239 (67%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +P L+E P +AE+ SH+L+L+ G I + + G+Y+ LPL  + L  +  IIREE
Sbjct: 1   MRASEYLIPTLREIPAEAEVVSHRLLLKAGFIRKAASGVYTLLPLAHRVLRKIMRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW+ SGR+  YG E+ RL DR+ +    GPTHEE++T++   
Sbjct: 61  MDRQGGQEILLPIMQPAELWLRSGRWHVYGPELFRLKDRHGRDFCLGPTHEEIITELVMG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S++ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G + SY KMF +
Sbjct: 121 DVRSHKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDRDEAGLEVSYRKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTD 238
           Y R+F R GL+  P+ A+SGPIGG +SHEF+VLA +GE   V+C +D   +    E  +
Sbjct: 181 YQRVFSRCGLEFRPVEADSGPIGGSVSHEFMVLAGSGEALVVYCPEDACGYAANVEKAE 239



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 3/184 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+   +  D  P+  R  ++ARGIEVG +F  GTKYS  M  T+    G +  V
Sbjct: 378 PLQVVTDLRLVREEDPCPQCGRPLLAARGIEVGQVFKLGTKYSEVMGLTYLDEHGTERPV 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R +AA +E +HD +GIIWP ++APF + ++ +   D+V     EK Y  L
Sbjct: 438 VMGCYGIGVTRTLAAAVEQNHDEQGIIWPTAIAPFAVVVVPVNVRDEVQSALAEKAYTVL 497

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           S+ G +V  DD  E+ G +F  ADL+G+PL+V VG   V D  VE++ R  G    + + 
Sbjct: 498 SEAGVEVLLDDRPERPGVKFKDADLVGYPLRVTVGKTAV-DGLVELRLRKNGDTRLVGIG 556

Query: 433 EVIN 436
           E+++
Sbjct: 557 ELVD 560


>gi|172057852|ref|YP_001814312.1| prolyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|226701289|sp|B1YI68|SYP_EXIS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171990373|gb|ACB61295.1| prolyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 566

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/356 (39%), Positives = 207/356 (58%), Gaps = 36/356 (10%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE  SH+L+LR G + Q++ GIYS+LPL ++ L  +  IIR+E
Sbjct: 1   MKQSKLFMPTLREVPSDAEAISHQLLLRAGFMRQNAAGIYSYLPLAKRVLSKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P +Q A+LW E+GR+D YG E++RL DR+D+    G THEE++T I R 
Sbjct: 61  MEGAGAQELLMPAIQPAELWEETGRWDIYGPELMRLTDRHDRRFALGATHEELITSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ+K+RDE RPRFG++R REF+MKDAYSF  T E  +  Y  MF +
Sbjct: 121 ELNSYKKLPVNLFQIQMKYRDERRPRFGLLRGREFIMKDAYSFHSTQESLEEEYQNMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL+  P+ A+SG IGG  +HEF  LA  GE          D  + S+ +D+ 
Sbjct: 181 YTKIFTRVGLEFRPVVADSGAIGGSGTHEFHALAAIGE----------DTIVYSDQSDYA 230

Query: 241 DIISLNSIVEQWT----APYAA----TSDVHNEKLFDS---LPENKRVSARGIEVGHIFY 289
             + +   V+Q+T    AP A     T D    +   S   LPE + +            
Sbjct: 231 ANLEMAESVDQYTKQDKAPEALEEVHTGDAKTIEAVSSVLGLPEQESIKT--------VV 282

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWP 341
           F T+  L M A  +G D + + +++ +Y +GA+ ++ A  E    + H   G + P
Sbjct: 283 FKTEQGLVM-ALVRG-DHEVNDIKLKNY-LGALDIMMATDEEIEQALHSTPGTLGP 335



 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG +F  GT+YS  M+ATF    GK   + MG YGIG  R ++AV+E  +D +GI
Sbjct: 400 ARGIEVGQVFKLGTRYSEGMNATFLDEGGKAQPLIMGCYGIGVSRTMSAVVEQHYDERGI 459

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++APF + LI +   +    +  E +Y  L+  G  V +DD  E+ G +FA ADL+
Sbjct: 460 IWPKAIAPFDVHLIAVNGKNAEQLEVAETVYRELTAAGFSVLFDDRKERAGVKFADADLI 519

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P+++ VG K   D  VE+K R  G  E++   +++ 
Sbjct: 520 GLPVRINVGKK-APDGIVELKARRGGEAEEIQQADLLE 556


>gi|323705637|ref|ZP_08117211.1| prolyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535114|gb|EGB24891.1| prolyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 570

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P ++E P +AEI SH LML+  M+ + + G+Y +LPLG++ L  +  I+REE
Sbjct: 1   MRLSQLFIPTMREVPAEAEIPSHILMLKAAMMRKLASGVYIYLPLGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  +  A+L  ESGR+D +G EM +L DRND+    GPTHEEV TD+ R+
Sbjct: 61  MDRAGAQEVLMSAIIPAELLKESGRWDVFGPEMFKLKDRNDREFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD+  +G   S++KM+ +
Sbjct: 121 DVKSYRQLPLTIYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDVDWDGLDVSFDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF R GLK   + A++G +GG  S EF+V ++ GE  + +C
Sbjct: 181 YCRIFDRCGLKYTVVEADTGAMGGKDSKEFMVTSNVGEAVIAYC 224



 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 1/166 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R+ AA IE +HD KGII
Sbjct: 405 RGIEVGHIFKLGTKYSDALGANYIDENGNEKPIIMGCYGIGLNRIAAAAIEQNHDDKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+AP+ + ++ +   + V RD  EK+Y  LSK G +V  DD   + G +F  ADLLG
Sbjct: 465 WPMSIAPYHVIIVPVNVSNDVQRDLAEKLYDELSKAGIEVLIDDRDLRAGVKFNDADLLG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P+++ VG K   D+ VE+K R      ++  +EV+       S N
Sbjct: 525 IPIRITVGKK-AEDNIVELKLRREEKPIELKYDEVLGKVKELISEN 569


>gi|229513024|ref|ZP_04402490.1| prolyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229349917|gb|EEO14871.1| prolyl-tRNA synthetase [Vibrio cholerae TMA 21]
          Length = 600

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +I+G + + +   E K+R +G +E +++  +I++   + 
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMASIIDFIQAKL 570


>gi|220931621|ref|YP_002508529.1| prolyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|254782904|sp|B8CW65|SYP_HALOH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219992931|gb|ACL69534.1| prolyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 568

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 160/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P++AE+ SH+LMLR G+I   + G+YS+LPLG + +  +  IIR+ 
Sbjct: 1   MRMSNLYIPTLKEVPKEAEVVSHQLMLRAGLIRNLTAGVYSFLPLGYRVIKKIEGIIRKV 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +P + ++DLW ESGR++ +G  M++  DR  +    GPTHEEV+TD+ R 
Sbjct: 61  MDESGAQEVLMPVIHTSDLWKESGRWEKFGPLMIKFEDRKGREYCLGPTHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP   YQIQ K RDE+RPRFG+MRSREF+MKDAYSFD   EG   SY  M+ +
Sbjct: 121 EIRSYKDLPLNLYQIQTKVRDEIRPRFGLMRSREFIMKDAYSFDRDYEGLDKSYQVMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y  +F+R GL+   + A++G +GG  SHEF+VLA++GE  + FC++
Sbjct: 181 YTEVFNRCGLEVRAVEADTGAMGGKDSHEFMVLAESGEDDIAFCNR 226



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 1/164 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M AT+   +GK+  + MGSYGIG  R+VAA IE +HD  GIIW
Sbjct: 404 GIEVGHIFKLGTKYSESMGATYLDENGKEQPIVMGSYGIGVTRLVAAAIEQNHDEHGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++AP+++ ++ +   D+V + A E++Y  L     +V  DD  E+ G +F  ADL+G 
Sbjct: 464 PKAIAPYQVIILPLGKGDEVNKRA-EELYLELKDNNIEVLLDDRNERAGVKFNDADLIGI 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           PL++ +GS+ +    +E + R TG   ++S+E+ I        N
Sbjct: 523 PLRLTIGSRSLDKGVIEARVRGTGQDYEISVEDAIKDIKKLLEN 566


>gi|309787126|ref|ZP_07681738.1| prolyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308924704|gb|EFP70199.1| prolyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 547

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 144/199 (72%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            SHEF VLA +GE  V  S
Sbjct: 181 ASHEFQVLAQSGEDDVVFS 199



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 359 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 418

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 419 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 478

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 479 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 538

Query: 436 NY 437
            Y
Sbjct: 539 EY 540


>gi|312970296|ref|ZP_07784478.1| prolyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|110613794|gb|ABF02461.1| proline tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|310337794|gb|EFQ02905.1| prolyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|313646744|gb|EFS11203.1| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|323160236|gb|EFZ46194.1| prolyl-tRNA synthetase [Escherichia coli E128010]
 gi|332098769|gb|EGJ03729.1| prolyl-tRNA synthetase [Shigella boydii 3594-74]
 gi|332762199|gb|EGJ92468.1| prolyl-tRNA synthetase [Shigella flexneri 4343-70]
          Length = 547

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 144/199 (72%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            SHEF VLA +GE  V  S
Sbjct: 181 ASHEFQVLAQSGEDDVVFS 199



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 359 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 418

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 419 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 478

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 479 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 538

Query: 436 NY 437
            Y
Sbjct: 539 EY 540


>gi|229530020|ref|ZP_04419410.1| prolyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229333794|gb|EEN99280.1| prolyl-tRNA synthetase [Vibrio cholerae 12129(1)]
          Length = 571

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q   LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFQLWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|323181612|gb|EFZ67027.1| prolyl-tRNA synthetase [Escherichia coli 1357]
          Length = 547

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 144/199 (72%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            SHEF VLA +GE  V  S
Sbjct: 181 ASHEFQVLAQSGEDDVVFS 199



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 360 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 419

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 420 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 479

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 480 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 539

Query: 437 Y 437
           Y
Sbjct: 540 Y 540


>gi|323176512|gb|EFZ62104.1| prolyl-tRNA synthetase [Escherichia coli 1180]
          Length = 547

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 144/199 (72%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            SHEF VLA +GE  V  S
Sbjct: 181 ASHEFQVLAQSGEDDVVFS 199



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 359 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 418

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 419 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 478

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++I
Sbjct: 479 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDII 538

Query: 436 NY 437
            Y
Sbjct: 539 EY 540


>gi|91204601|emb|CAJ70829.1| strongly similar to prolyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 576

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 155/218 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +P L+E+P +AEI SHKLM+R G+I + + G Y++LPLG   L+ V AI+REE
Sbjct: 1   MKWSQTLIPTLKESPSEAEIDSHKLMIRAGLIRRITSGAYAYLPLGTLVLNKVIAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GAIE+ +P LQ  DL  ESGR D +G +++   DR+ K  +  PTHEEV+T I ++
Sbjct: 61  MNRSGAIEVFLPALQHLDLLKESGRLDVFGADLITFQDRHGKETVLSPTHEEVITYIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGV+RS+EF+MKDAYSFDL  +G  +SY  M+ +
Sbjct: 121 EINSYKQLPITLYQIQTKFRDEMRPRFGVLRSKEFIMKDAYSFDLDEKGLNNSYQLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF R  L  I   A+SG +GGD SHEF+V +  GE
Sbjct: 181 YCRIFDRCRLDYIIAEADSGAMGGDASHEFMVPSPVGE 218



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 95/147 (64%), Gaps = 1/147 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIE+GH+F  GTKY+  + A +  ADGK+    MG YGIG  R++AA+IE SHD  GI
Sbjct: 401 SQGIEIGHVFKLGTKYTSALKAHYLDADGKEKPKVMGCYGIGVNRIIAAIIEISHDENGI 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADL 397
           IWP S+AP+ + +I +   D +C DA   IY  ++ + G DV  DD   + G +F  ADL
Sbjct: 461 IWPMSLAPYHVIIIPVNVKDTICMDAARSIYDDMTNMKGIDVLLDDRDLRPGVKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G P+++I+G K+    ++EIK R +G
Sbjct: 521 IGIPVKIIIGKKYTETKELEIKLRKSG 547


>gi|262165127|ref|ZP_06032864.1| prolyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262172111|ref|ZP_06039789.1| prolyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|261893187|gb|EEY39173.1| prolyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|262024843|gb|EEY43511.1| prolyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 571

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVFSTE 226



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 107/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSAKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  VI+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 527 GVPHTVIIGDRSMDEGHFEYKNRRNGEKEAVAMESIIDFIQAKLA 571


>gi|258625204|ref|ZP_05720117.1| prolyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258582494|gb|EEW07330.1| prolyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 571

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVFSTE 226



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 107/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSAKMNCGVLDSNGKNAILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  VI+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 527 GVPHTVIIGDRSMDEGHFEYKNRRNGEKEAVAMESIIDFIQAKLA 571


>gi|260757797|ref|ZP_05870145.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|260668115|gb|EEX55055.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 232

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 154/226 (68%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           ++LA+TGE+QV+C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  
Sbjct: 1   MILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAK 60

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +    +VSARGIEVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE
Sbjct: 61  VKPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIE 120

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD  GIIWP ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G+
Sbjct: 121 ASHDDAGIIWPKTIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGA 180

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +FA  DL+G P QVIVG + V+  +VE+K R TG R+ + ++  IN
Sbjct: 181 KFATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQSLGIKAAIN 226


>gi|52080260|ref|YP_079051.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52785637|ref|YP_091466.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319645960|ref|ZP_08000190.1| prolyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|81825303|sp|Q65JJ1|SYP_BACLD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52003471|gb|AAU23413.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52348139|gb|AAU40773.1| ProS [Bacillus licheniformis ATCC 14580]
 gi|317391710|gb|EFV72507.1| prolyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 572

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K +  + +I+REE
Sbjct: 1   MRQSRTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLANKVIHKIQSIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T I R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHSSAESLDETYNDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  +F R GL   P+ A+SG +GG  +HEF+ L+D GE  +  S
Sbjct: 181 YTNVFTRCGLNFRPVIADSGAMGGKDTHEFMALSDVGEDTIAYS 224



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 95/159 (59%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  GT+YS  M AT+   +G+   + MG YGIG  R ++A++E  HD KG+
Sbjct: 403 AKGIEVGQVFKLGTRYSEAMDATYLDENGRAQPMLMGCYGIGISRTLSAIVEQHHDDKGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  V P+ + ++ +   +       EK+Y      G DV +DD  E+ G +FA +DL+
Sbjct: 463 IWPLEVTPYDLHILALNMKNDAQVQLAEKLYEEFKANGYDVLFDDRAERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P+++ VG K   +  VE+K R TG   +++ +E+ ++
Sbjct: 523 GLPIRITVG-KRADEGVVEVKIRKTGESFEIAADELFDF 560


>gi|325109306|ref|YP_004270374.1| prolyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324969574|gb|ADY60352.1| Prolyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 578

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/229 (50%), Positives = 158/229 (68%), Gaps = 4/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P ++E P DAE+ SH+LMLR G+I Q   G Y++LPLG +++    AIIREE
Sbjct: 1   MRWTQSLIPTMKETPADAEVPSHQLMLRAGLIRQLMAGAYTYLPLGWRSVQKAAAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDK--AMIYGPTHEEVMTDI 117
             R GA E+ +P LQ  +L+  +GR +++G  +++    R D+   +  GPTHEEV+TD+
Sbjct: 61  MERAGACELHMPALQPIELFERTGRINAFGSVLMKFDVPRGDRKVPVALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              HI SYR LP T YQIQ KFR+E RPRFGV+R+ EFLMKDAYSF  + E    +Y+ M
Sbjct: 121 ISRHISSYRQLPLTVYQIQTKFRNEERPRFGVLRTSEFLMKDAYSFASSLEQLNTTYDAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           + +Y R+F R GL+ IP+ AESGPIGGD SHEF++ AD GE Q V+C K
Sbjct: 181 YDAYCRVFKRCGLEFIPVEAESGPIGGDASHEFMIPADNGEDQIVYCKK 229



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 2/193 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D  P++        GIEVGH+F  GTKYS  +SA +     K H + MG 
Sbjct: 384 THDLRNAAAGDPCPKSGEPMDLVHGIEVGHVFKLGTKYSESLSAMYLDEHEKRHPIIMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+VA + E+ HD KG++WP S+AP+++ +I +K  D+    A   IYA L + G
Sbjct: 444 YGIGVNRIVAGLAETRHDDKGLLWPISIAPYEVLIIPLKTDDEELMSAANSIYAELKEQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD   + G +F  ADL+G P ++++G K + +   E+K R     E + L++V+ 
Sbjct: 504 VDVLMDDRSARPGVKFNDADLIGIPYRIVIGGKGLKEGVAEVKARTDADAEKVPLDQVVA 563

Query: 437 YASHRFSNNRPVL 449
             +   S  +  L
Sbjct: 564 NVTSLVSAAKEAL 576


>gi|296125160|ref|YP_003632412.1| prolyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296016976|gb|ADG70213.1| prolyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 578

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P L+E P DA IAS+KLM+R  +  + S G+YS+LPLG + L  ++ IIREE
Sbjct: 1   MRLSKLFMPTLKEAPSDAIIASNKLMIRAALARKISNGLYSYLPLGVRVLSKISNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++
Sbjct: 61  MDAIGSNECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +
Sbjct: 121 EIQSYKDLPLTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCSK 225
           Y +IF R+GL ++ ++A+SG +GG+ S EF+VL++ G ET +FCSK
Sbjct: 181 YTKIFKRMGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSK 226



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 2/183 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D    K  D  PE        +G+E+GHIF  G KY+   +      + K+    MG YG
Sbjct: 384 DFRTAKEGDKCPECGETLYQKKGLELGHIFKLGDKYTQAFNFKVLDENNKEITPIMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +A+VIE ++D KGII+P SVAP++  ++ I    +      E+IY  L+ +  +
Sbjct: 444 IGVNRALASVIEQNYDDKGIIFPISVAPYEAIVVAIDKEGEESFKKAEEIYNALNALKVE 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD  E++G +    DL+G P++++VG K +    VE K R +    ++  +E++ Y 
Sbjct: 504 TMFDDRKERLGVKLNDCDLIGIPMRIMVGKKSLQRGVVEFKLRSSSESIEVKADEIVEYV 563

Query: 439 SHR 441
             +
Sbjct: 564 KAK 566


>gi|328955488|ref|YP_004372821.1| prolyl-tRNA synthetase [Coriobacterium glomerans PW2]
 gi|328455812|gb|AEB07006.1| prolyl-tRNA synthetase [Coriobacterium glomerans PW2]
          Length = 576

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 155/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  + P L+E+P +A++ SH+L+LR GMI + + GIYS+LPL  ++L  +  I+R+E
Sbjct: 5   MKMSNLYAPTLKEDPAEADLVSHRLLLRAGMIRKMASGIYSYLPLAWRSLKKIEEIVRDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E  +P L  A+LW  SGR+D+YG E++R+ DR+ +    GPTHEE +TD+ ++
Sbjct: 65  MDAIGAQECLLPILTDAELWRLSGRWDAYGPELMRIVDRHQRQFALGPTHEETVTDLVKN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP + YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T    +  Y  M  +
Sbjct: 125 ELASYRQLPVSLYQIQTKFRDEMRPRFGLMRGREFIMKDAYSFSATQASLQECYEDMKAA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y RI  R GL ++P+ A+SG IGGD S E++ LAD+GE   V+C
Sbjct: 185 YGRICERCGLAALPVAADSGQIGGDTSVEYMALADSGEASLVYC 228



 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 125/230 (54%), Gaps = 19/230 (8%)

Query: 223 CSKDFMDF----PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           C  + +DF      P  + + D+   L ++V     P      V  E+L           
Sbjct: 359 CGANEVDFHLTGACPGRDFEVDEWADLVTVVAGDPCP------VCGEEL---------SG 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEV  +F  GTKYSLPM ATF    G+   + MG YG+G  R +AAV+E  HD  GI
Sbjct: 404 ARGIEVSQVFQLGTKYSLPMGATFTDEAGRTQPMLMGCYGVGISRTLAAVVEQHHDEAGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+++S++ +    Q C  A +++   LS  G DV  DD  E+ G +FA  DL+
Sbjct: 464 IWPVSVAPYEVSIVLLDTKLQACVAAGDRLAFELSAGGIDVVLDDRAERPGVKFADNDLM 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           GFP Q+IVG + ++   VEIK R TG R D++L++  NYA  R    R V
Sbjct: 524 GFPYQIIVGKRGIAAGTVEIKDRATGERVDVALDDASNYAVERIRRARGV 573


>gi|225619417|ref|YP_002720643.1| prolyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|254782887|sp|C0QY98|SYP_BRAHW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225214236|gb|ACN82970.1| prolyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 578

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P L+E P DA IAS+KLMLR  +  + S G+YS+LPLG + L+ ++ IIREE
Sbjct: 1   MRLSKLFMPTLKEAPSDAIIASNKLMLRAALARKISNGLYSYLPLGVRVLNKISNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++
Sbjct: 61  MDAIGSNECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++ P T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +
Sbjct: 121 EIQSYKDFPLTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCSK 225
           Y +IF R+GL ++ ++A+SG +GG+ S EF+VL++ G ET +FCSK
Sbjct: 181 YTKIFKRMGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSK 226



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 93/162 (57%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +G+E+GHIF  G KY+   +      + K+    MG YGIG  R +A+VIE ++D KGII
Sbjct: 405 KGLELGHIFKLGDKYTEAFNFKVLDENNKEITPIMGCYGIGVNRALASVIEQNYDDKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P SVAP++  ++ I    +      E+IY  L+ +G +  +DD  E++G +    DL+G
Sbjct: 465 FPISVAPYEAIVVAIDKETEDSFKKAEEIYNTLNSIGVETMFDDRKERLGVKLNDCDLIG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            P+++IVG K +    VE K R +    ++ +E++I Y   +
Sbjct: 525 IPIRIIVGKKSLQKGVVEFKLRKSQESVEVKVEDIIEYVKTK 566


>gi|149183492|ref|ZP_01861921.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148848804|gb|EDL63025.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 569

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/221 (51%), Positives = 153/221 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+ +LR G I Q+S GIYS+LPLG+K L  V  IIREE
Sbjct: 1   MKQSMTLIPTLRETPADAEVKSHQQLLRAGFIRQNSSGIYSFLPLGRKVLQKVEEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +E+ +P LQ A+LW ESGR+ +YG E++RL DR+ ++   G THEEV+T + R 
Sbjct: 61  MINAGGVELLMPALQQAELWQESGRWGTYGPELMRLEDRHKRSFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y K+F +
Sbjct: 121 EIKSYKKLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHSSYESLDDTYEKIFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  +F R GL    + A+SG +GG  +HEF+VL+D GE  +
Sbjct: 181 YSNVFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTI 221



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 87/148 (58%), Gaps = 1/148 (0%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V A+GIEVGH+F  GT+YS  M A +   +G+   + MG YGIG  R +AAV E   D  
Sbjct: 401 VFAKGIEVGHVFKLGTRYSDAMGAQYLDENGRAQSMIMGCYGIGVSRTLAAVAEQYCDEN 460

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP S+ PF + ++ I   +   R+  E++Y+ L +   DV  DD  E+ G +F  +D
Sbjct: 461 GLQWPSSLTPFDVHIVPINIKNDEQRELAEQLYSELKEQRFDVLLDDRQERPGVKFTDSD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           L+G P +V VG K  +D  VE+K R TG
Sbjct: 521 LIGLPFRVTVGKK-AADGVVEVKIRKTG 547


>gi|289662612|ref|ZP_06484193.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289668443|ref|ZP_06489518.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 564

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 3/153 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDEAGI 461

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K  D     A + +   L   G D   DD G + G+ FA  +
Sbjct: 462 IWPAPMAPWQVVVCVINPK-QDANVVAAAQALLDELIAAGLDAALDDRGLRPGAMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LLG P +V+V  + ++    E + R     E++
Sbjct: 521 LLGIPHRVVVSERGLAAGTFEYRARTADAAENL 553


>gi|237739058|ref|ZP_04569539.1| prolyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423658|gb|EEO38705.1| prolyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 567

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR  MI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 97/160 (60%), Gaps = 5/160 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENG 460

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP S+AP+ + +I  NIK   QV     EKIY  L     DV  DD  E+ G +F  A
Sbjct: 461 IIWPVSIAPYIVDVIPANIKNEGQVS--LAEKIYNELQAEDIDVMLDDRDEKPGFKFKDA 518

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DL+GFP +V+VG K   +  VE+K R TG   ++S  EV+
Sbjct: 519 DLIGFPFKVVVG-KRADEGIVEVKIRKTGETLEVSESEVV 557


>gi|319649526|ref|ZP_08003682.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317398688|gb|EFV79370.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 567

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 119/277 (42%), Positives = 175/277 (63%), Gaps = 15/277 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE  SH+L+LR G I Q++ GIYS++PL +K L  V AIIREE
Sbjct: 1   MKQSMTLIPTLKEVPADAETRSHQLLLRAGFIRQNASGIYSYMPLAKKVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P LQ A+LW ESGR+ +YG E++R+ DR+++    G THEEV+T + R 
Sbjct: 61  MDNAGAVELLMPALQQAELWQESGRWYTYGPELMRMKDRHEREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF    E     Y+K+F +
Sbjct: 121 AVKSYKKLPLALYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHSNQESLDEMYDKLFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL    + A+SG +GG  +HEF+VL++ GE          D    S+ +++ 
Sbjct: 181 YSNVFRRCGLNFRAVIADSGAMGGKDTHEFMVLSEVGE----------DTIAYSDTSEYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             I +  ++ Q++      S+   ++L  +  ENK+ 
Sbjct: 231 ANIEMAPVLAQYS-----KSNEEPQELEKAATENKKT 262



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 88/146 (60%), Gaps = 1/146 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVGHIF  GT+YS  M ATF   +G+   + MG YGIG  R +AAV E   D  G 
Sbjct: 402 AKGIEVGHIFKLGTRYSEAMEATFLDENGRTQPMIMGCYGIGVSRTMAAVAEQFSDENGF 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+APF + LI I   D+      E++Y  L +   DV  DD  E+ G +FA +DL+
Sbjct: 462 IWPRSLAPFDLHLIPINMKDETQSAVAEELYTMLKRDRYDVLMDDRQERPGVKFADSDLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P+++ VG K  S+  VE+K R TG
Sbjct: 522 GLPIRITVGKK-ASEGIVEVKVRKTG 546


>gi|262402773|ref|ZP_06079334.1| prolyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262351555|gb|EEZ00688.1| prolyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 571

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 153/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKDGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVFSTE 226



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 107/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|71898157|ref|ZP_00680343.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Ann-1]
 gi|71732131|gb|EAO34187.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Ann-1]
          Length = 564

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 150/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGE 218



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGRKYTEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHDVAGI 461

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP  +AP+++++  I    D V   A E + A L     D   DD G + G  FA  +L
Sbjct: 462 IWPAPIAPWQVAVCVINPKKDPVITAAAELLLAELQSADVDTVLDDRGLRPGVMFADMEL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +G P +++V  + ++    E + R T + E++
Sbjct: 522 IGIPHRIVVSERGLAAGTYEYRARRTAMVENL 553


>gi|255994086|ref|ZP_05427221.1| proline--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993754|gb|EEU03843.1| proline--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 582

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 154/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK +   L+E P +AE+ SH L+LR GMI + + G+Y ++P+G KAL  +  IIR E
Sbjct: 1   MRLSKAYFKTLREVPAEAELKSHILLLRAGMIRKLASGVYGYMPMGLKALKKIENIIRNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  LQ A+LW ESGR+++YG EM R+ DR+D+    GPTHEEV TDI R+
Sbjct: 61  MDAEGCQEILMSALQPAELWKESGRWNAYGPEMWRVCDRHDREFCLGPTHEEVFTDIIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S+R LP   YQIQ K+RDE RPRFG+MRSREF+MKD+YSFD   EG   SY  M+  
Sbjct: 121 DVDSHRKLPINLYQIQTKYRDEARPRFGLMRSREFIMKDSYSFDKDEEGLDVSYENMYKR 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y  +F R+ L  +P+ A++G +GG+ SHEFI  AD GE+++ FC
Sbjct: 181 YENVFKRMELDVMPVEADTGAMGGNGSHEFIAKADAGESEIAFC 224



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/173 (43%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K +  RGIEVG +F  GTKYS PM A +K  D  +  + MGSYGIG  R +AAVIE + D
Sbjct: 404 KILYTRGIEVGQLFKLGTKYSEPMKAIYKDEDMNERLMYMGSYGIGVSRTLAAVIEQNSD 463

Query: 335 GKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             GIIWP  VAP+   I+LIN    DQ      E IY +L K   DV  DD  E+ G +F
Sbjct: 464 ENGIIWPLPVAPYHVIITLINPSDKDQTA--LAEDIYEKLRKSNIDVILDDRDERPGVKF 521

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             ADL+G P ++ VG +  +D KVE K R +    DM   E +   S+    N
Sbjct: 522 KDADLIGIPFRINVG-RDAADGKVEFKVRGSNYGMDMKKRETVVIDSNEAVKN 573


>gi|325928567|ref|ZP_08189755.1| prolyl-tRNA synthetase, family II [Xanthomonas perforans 91-118]
 gi|325541106|gb|EGD12660.1| prolyl-tRNA synthetase, family II [Xanthomonas perforans 91-118]
          Length = 564

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGI 461

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +  +L   G D   DD G + G+ FA  +
Sbjct: 462 IWPAPMAPWQVVVCVINPKQDPQVL-AAAQALLDQLLAAGLDAALDDRGLRPGAMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LLG P +V+V  + ++    E + R     E +    + +  +H
Sbjct: 521 LLGIPHRVVVSERGLAAGTFEYRARTADAAESLDKAALFSRLAH 564


>gi|281411733|ref|YP_003345812.1| prolyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281372836|gb|ADA66398.1| prolyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 577

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 158/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEQFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V FC K
Sbjct: 181 YSRIMERLGVRYMIIEAETGTIGGNASHEFVVPAKIGETNVLFCEK 226



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +GIE+GHIF  GTKYS  M A F   +G+     MG YG G  R +AAV+E  HD  G
Sbjct: 400 ATKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENG 459

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +IWP S+AP+ + +  +  +D   +   E IY  LS+ G +V  DD     G +F  ADL
Sbjct: 460 MIWPLSIAPYTVVVDILNMNDAEQKQIGELIYQVLSEKGEEVVLDDREVSPGFKFKDADL 519

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +GFP+++ VG + + +  VE+K R +
Sbjct: 520 IGFPIRINVG-RSLKEGVVELKKRYS 544


>gi|15643280|ref|NP_228324.1| prolyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|81859132|sp|Q9WYY4|SYP_THEMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4981026|gb|AAD35599.1|AE001727_11 prolyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 577

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 158/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEQFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V FC K
Sbjct: 181 YSRIMERLGVRYMIIEAETGAIGGNASHEFVVPAKIGETNVLFCEK 226



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +GIE+GHIF  GTKYS  M A F   +G+     MG YG G  R +AAV+E  HD  G
Sbjct: 400 ATKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENG 459

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +IWP S+AP+ + +  +  +D   +   EKIY  LS+ G +V  DD     G +F  ADL
Sbjct: 460 MIWPLSIAPYTVVVDILNMNDAEQKQVGEKIYQVLSEKGEEVVLDDREVSPGFKFKDADL 519

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +GFP+++ VG + + +  VE+K R +
Sbjct: 520 IGFPIRINVG-RSLKEGVVELKKRYS 544


>gi|298499001|ref|ZP_07008808.1| prolyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|297543334|gb|EFH79384.1| prolyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 571

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEKNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|229523326|ref|ZP_04412733.1| prolyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229339689|gb|EEO04704.1| prolyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
          Length = 571

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKTGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R +G +E +++  +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMASIIDFIQAKLA 571


>gi|262197045|ref|YP_003268254.1| prolyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262080392|gb|ACY16361.1| prolyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 584

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 118/244 (48%), Positives = 158/244 (64%), Gaps = 10/244 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+P L+E+P DA++ SH  M+R G + + + G+Y++LPLG + +  +  I+REE
Sbjct: 1   MRLSWAFIPTLKESPADAQVVSHVYMVRGGYMRRLAAGVYTFLPLGWRVIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P     +LW ESGR+  YG E+LR  DR      +GPTHEEV+ D+ R 
Sbjct: 61  MDAAGAQEVLMPAAIPGELWQESGRWSKYGPELLRFQDRKGADFCFGPTHEEVVVDMVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSYR LP T YQIQ KFRDELRPR G+MR REF+MKDAYSFD++ E + HSY  M+ +
Sbjct: 121 DTKSYRELPLTLYQIQSKFRDELRPRAGLMRGREFIMKDAYSFDVSEEAAMHSYTGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF---------P 231
           Y RIF R GL   P+ A++G IGG  SHEF VLA++GE  +  S D  ++         P
Sbjct: 181 YERIFRRCGLDFRPVEADTGAIGGSRSHEFQVLAESGEDAIV-SCDACEYAANVEEAKVP 239

Query: 232 IPSE 235
            PSE
Sbjct: 240 APSE 243



 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 106/170 (62%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+FY GT YS PM  TF    G++  ++MG YGIG  R+ AA IE +HD  GI+
Sbjct: 410 RGIEVGHVFYLGTTYSAPMGCTFLDEAGQETAMEMGCYGIGITRIAAAAIEQNHDEGGIV 469

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+AP++++++ ++  D+    A E +YA+L + G +V  DD  E+ G++F  ADL+G
Sbjct: 470 WPLSIAPYEVAILPLQMKDEDVAAAGETLYAKLKECGIEVLLDDRAERPGAKFKDADLIG 529

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            PL+V +G + + D KVE+K R  G  E + + + + + +      R  L
Sbjct: 530 IPLRVAIGKRSLDDGKVEVKWRKGGDAELVPVADAVEHVAGLIRAERERL 579


>gi|209694468|ref|YP_002262396.1| prolyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|226731423|sp|B6EHZ8|SYP_ALISL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|208008419|emb|CAQ78577.1| prolyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 571

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEEMGPELLRFTDRHARPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y R F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCRAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 3/166 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     A+GK+  ++MG YGIG  RVVA+ IE ++D  GI+
Sbjct: 407 RGIEVGHIFQLGTAYSEAMNCGVLDANGKNSILEMGCYGIGVSRVVASAIEQNNDEYGIV 466

Query: 340 WPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP+++APF ++++  N+   D+V ++A EK+YA L+ +G DV +DD  E+ G  F   +L
Sbjct: 467 WPEALAPFTVAIVPMNMYKSDRV-KEAAEKLYAELTAMGIDVLFDDRKERPGVMFKDIEL 525

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P  V++G + + +   E K+R    +E + +  ++ +   + S
Sbjct: 526 IGIPHTVVIGDRSMDEGNFEYKNRRANSKEVIEIANIVEHIKAQLS 571


>gi|153216557|ref|ZP_01950520.1| prolyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|153830554|ref|ZP_01983221.1| prolyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|124114232|gb|EAY33052.1| prolyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|148873952|gb|EDL72087.1| prolyl-tRNA synthetase [Vibrio cholerae 623-39]
          Length = 571

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R +G +E +++  +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMASIIDFIQAKLA 571


>gi|162138530|ref|YP_365423.2| prolyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|114152278|sp|Q3BP90|SYP_XANC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGI 461

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +  +L   G D   DD G + G+ FA  +
Sbjct: 462 IWPAPMAPWQVVVCVINPKQDPQVL-AAAQALLDQLLAAGLDAALDDRGLRPGAMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LLG P +V+V  + ++    E + R     E +    + +   H
Sbjct: 521 LLGIPHRVVVSERGLAAGTFEYRARTADAAESLDKAALFSRLGH 564


>gi|15640891|ref|NP_230522.1| prolyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585725|ref|ZP_01675520.1| prolyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121728341|ref|ZP_01681371.1| prolyl-tRNA synthetase [Vibrio cholerae V52]
 gi|147673158|ref|YP_001216355.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|153819016|ref|ZP_01971683.1| prolyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153823083|ref|ZP_01975750.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227081051|ref|YP_002809602.1| prolyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229505518|ref|ZP_04395028.1| prolyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510812|ref|ZP_04400291.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229517932|ref|ZP_04407376.1| prolyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229608537|ref|YP_002879185.1| prolyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254848011|ref|ZP_05237361.1| prolyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255744669|ref|ZP_05418620.1| prolyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262161198|ref|ZP_06030309.1| prolyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262168701|ref|ZP_06036396.1| prolyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|81858145|sp|Q9KTM7|SYP_VIBCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172047427|sp|A5F340|SYP_VIBC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782925|sp|C3LTC5|SYP_VIBCM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|9655329|gb|AAF94037.1| prolyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550088|gb|EAX60104.1| prolyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121629396|gb|EAX61826.1| prolyl-tRNA synthetase [Vibrio cholerae V52]
 gi|126510449|gb|EAZ73043.1| prolyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126519409|gb|EAZ76632.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|146315041|gb|ABQ19580.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227008939|gb|ACP05151.1| prolyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|227012695|gb|ACP08905.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229344647|gb|EEO09621.1| prolyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229350777|gb|EEO15718.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229357741|gb|EEO22658.1| prolyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229371192|gb|ACQ61615.1| prolyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254843716|gb|EET22130.1| prolyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255737700|gb|EET93094.1| prolyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262022819|gb|EEY41525.1| prolyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262028948|gb|EEY47601.1| prolyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
          Length = 571

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|134299814|ref|YP_001113310.1| prolyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|172044305|sp|A4J5Y2|SYP_DESRM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134052514|gb|ABO50485.1| prolyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 569

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 110/225 (48%), Positives = 156/225 (69%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SH+L+LR G I + + G+Y++LPL Q+ L  +  IIREE
Sbjct: 1   MRVSQMLVPTLREVPAEAEVVSHQLLLRAGFIRKTASGVYTYLPLAQRVLKKLRQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +P +Q A++W+ESGR+  YG E+ RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  IDKQGGQELLMPIIQPAEMWLESGRWHVYGPELFRLKDRHDRNFCLGPTHEEVITILIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G   SY KM  +
Sbjct: 121 EVRSYKQMPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDRDEAGLDISYQKMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y  IF R G+K  P+ A+SG IGG  +HEF+VLA++GE  + +CS
Sbjct: 181 YTSIFSRCGVKFRPVEADSGAIGGSSTHEFMVLAESGEAAILYCS 225



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 102/159 (64%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           + ARGIEVG IF  GTKYS  + ATF   +GK+  + MG YGIG  R +AA IE ++D  
Sbjct: 401 LEARGIEVGQIFKLGTKYSKALGATFLDENGKEQPIVMGCYGIGVSRTMAAAIEQNYDKD 460

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP S+AP++  +I +   D       E++Y  L++ G +   DD  E+ G +F  AD
Sbjct: 461 GIIWPASIAPYQAIVIPVAPKDDNQMKIAEELYKALNQAGVETILDDRSERPGVKFKDAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G+PL+++VG+K V++  VEI+ R +G  + +S+++ +
Sbjct: 521 LIGYPLRIVVGNKAVTEGVVEIRQRRSGQTDLVSVKDSV 559


>gi|153824641|ref|ZP_01977308.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|149741859|gb|EDM55888.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-2]
          Length = 571

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSTE 226



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A E++YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVQQAAEQLYAELTAAGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R +G +E +++  +I++   + +
Sbjct: 527 GVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMASIIDFIHAKLA 571


>gi|148269548|ref|YP_001244008.1| prolyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166980169|sp|A5IJQ9|SYP_THEP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147735092|gb|ABQ46432.1| prolyl-tRNA synthetase [Thermotoga petrophila RKU-1]
          Length = 577

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 158/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEEFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V FC K
Sbjct: 181 YSRIMERLGVRYMIIEAETGAIGGNASHEFVVPAKIGETNVLFCEK 226



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +GIE+GHIF  GTKYS  M A F   +G+     MG YG G  R +AAV+E  HD  G
Sbjct: 400 ATKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENG 459

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +IWP S+AP+ + +  +  +D   +   EKIY  LS+ G +V  DD     G +F  ADL
Sbjct: 460 MIWPLSIAPYTVVVDILNMNDAEQKQVGEKIYQVLSEKGEEVVLDDREVSPGFKFKDADL 519

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +GFP+++ VG + + +  VE+K R +
Sbjct: 520 IGFPIRINVG-RSLKEGVVELKKRYS 544


>gi|312966332|ref|ZP_07780558.1| prolyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312289575|gb|EFR17469.1| prolyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|323190405|gb|EFZ75680.1| prolyl-tRNA synthetase [Escherichia coli RN587/1]
          Length = 547

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 145/199 (72%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+ +P +Q ++LW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVLMPVVQPSELWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            SHEF VLA +GE  V  S
Sbjct: 181 ASHEFQVLAQSGEDDVVFS 199



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 112/181 (61%), Gaps = 3/181 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 360 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 419

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 420 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 479

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 480 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 539

Query: 437 Y 437
           Y
Sbjct: 540 Y 540


>gi|262065930|ref|ZP_06025542.1| proline--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291380410|gb|EFE87928.1| proline--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 567

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR  MI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLQDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 97/160 (60%), Gaps = 5/160 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENG 460

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP S+AP+ + +I  NIK   QV     EKIY  L     DV  DD  E+ G +F  A
Sbjct: 461 IIWPVSIAPYIVDVIPANIKNEGQVS--LAEKIYNELQAENIDVMLDDRDEKPGFKFKDA 518

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DL+GFP +V+VG K   +  VE+K R TG   +++  EV+
Sbjct: 519 DLIGFPFKVVVG-KRADEGIVEVKIRRTGETLELAQAEVV 557


>gi|164686598|ref|ZP_02210626.1| hypothetical protein CLOBAR_00190 [Clostridium bartlettii DSM
           16795]
 gi|164604327|gb|EDQ97792.1| hypothetical protein CLOBAR_00190 [Clostridium bartlettii DSM
           16795]
          Length = 566

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 119/219 (54%), Positives = 146/219 (66%), Gaps = 1/219 (0%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            +P L+E P DAEI SH+LMLR GMI + + GIY+ LP+G +    V  IIREE N  GA
Sbjct: 2   LMPTLKEVPSDAEITSHQLMLRAGMIRKMASGIYNQLPMGIRVFRKVEDIIREEMNAKGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+S   L  A+LW ESGR+D  G EM RL DRN +    GPTHEE  T I R+ I SY+
Sbjct: 62  QEISCALLVPAELWQESGRWDVMGPEMFRLKDRNGRDYCLGPTHEETFTHIVRNEITSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP   YQI+ KFRDE RPRFGVMR+R F MKDAYSFD   EG   SY+ MF +Y RIF 
Sbjct: 122 QLPLNLYQIETKFRDERRPRFGVMRTRNFTMKDAYSFDADQEGLDKSYDDMFDAYTRIFA 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           R  L + P++A+SG +GG  S EF+V ++ GE + VFCS
Sbjct: 182 RCELDNSPVQADSGAMGGSASAEFMVKSEVGEDEIVFCS 220



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 1/166 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+EVGHIF  GTKYS  M ATF   +GK   + MG YGIG  R VAAVIE  HD  GII
Sbjct: 397 RGVEVGHIFKLGTKYSESMGATFLDQNGKSQPIIMGCYGIGVERTVAAVIEQHHDENGII 456

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++AP+ + ++ +    +   +  EKIY  L   G +V  DD  E+ G +F  +DLLG
Sbjct: 457 WPLAIAPYHVVVVPVNVKKEEHLENAEKIYKELEAAGVEVLLDDRNERAGFKFKDSDLLG 516

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P+++ VG   V D KVE K R    +E +S++EV++     F+ N
Sbjct: 517 IPMRITVGKDIV-DGKVEFKLRKEADKEIISVDEVLDRVKAEFAKN 561


>gi|77748729|ref|NP_643874.2| prolyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
 gi|114152277|sp|Q8PGP9|SYP_XANAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGI 461

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +  +L   G D   DD G + G+ FA  +
Sbjct: 462 IWPAPMAPWQVVVCVINPKQDPQVL-AAAQALLDQLLAAGLDAALDDRGLRPGAMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LLG P +V+V  + ++    E + R     E +
Sbjct: 521 LLGIPHRVVVSERGLAAGTFEYRARTADAAESL 553


>gi|302036852|ref|YP_003797174.1| prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|190343267|gb|ACE75655.1| prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300604916|emb|CBK41249.1| Prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 543

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 147/201 (73%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR G+I + + GIY++LPLG + L  +  I+REE NR GA E+ +P    A+LW E+GR
Sbjct: 1   MLRAGLIRKVAAGIYTYLPLGLRVLRKIERIVREEMNRAGAQELLMPVASPAELWRETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +D YGKE+LR  DR+++    GPTHEEV+TD+FR  ++SYR +P  FYQIQ KFRDE+RP
Sbjct: 61  WDFYGKELLRFKDRHERDFCLGPTHEEVITDLFRREVRSYRQMPLNFYQIQTKFRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFG+MR REF+MKDAYSFD    G++ +Y KM+ +Y RIF R GL   P+ A++G IGG 
Sbjct: 121 RFGLMRGREFIMKDAYSFDRDEAGARLNYQKMYDAYNRIFTRCGLTFRPVEADTGLIGGT 180

Query: 206 LSHEFIVLADTGETQVFCSKD 226
            SHEF+VLA+TGE  +  S+D
Sbjct: 181 SSHEFMVLAETGEETIVYSED 201



 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 3/182 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N +  DS P       +A+GIEVGH+F  GTKYS  M ATF  A G++    MG Y
Sbjct: 356 ADLRNARAGDSSPRKDGTLKTAKGIEVGHVFMLGTKYSQAMKATFLDAQGQEQLAVMGCY 415

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R  AA +E +HD KGI WP  +APF ++L+ + +  Q      E +Y  + + G 
Sbjct: 416 GIGVSRTAAASVEQNHDAKGIKWPVPIAPFHVTLLPL-SQSQPVTQLAETLYRAMQEAGI 474

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V WDD  E+ G +F  ADL+G P  +++G K ++  +VE+K R TG  + ++ ++V+  
Sbjct: 475 EVLWDDRDERAGVKFNDADLIGAPYHLVIGEKGLAQGQVELKLRHTGETQKVAPDQVVAL 534

Query: 438 AS 439
            S
Sbjct: 535 LS 536


>gi|90413553|ref|ZP_01221544.1| prolyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90325485|gb|EAS41968.1| prolyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 571

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 121/263 (46%), Positives = 164/263 (62%), Gaps = 10/263 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE       D + F   S  +D+ 
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGE-------DLIAF---SSESDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVH 263
             I     +   T P AAT ++ 
Sbjct: 231 ANIEKAEALAPTTEPAAATQEME 253



 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+    G DGK   ++MG YGIG  RVVA+ IE ++D  GII
Sbjct: 407 RGIEVGHIFQLGTNYSEKMNCNVLGPDGKSVTLEMGCYGIGVSRVVASAIEQNYDENGII 466

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+++++ +  A  +  + A E +YA L+  G +V +DD  E+ G  F   +L+
Sbjct: 467 WPTALAPFQVAIVPMNMAKSEEVKAAAESLYAELTAAGIEVLFDDRKERPGVMFKDIELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G++ + + ++E K R  G +  + + +V+     + +
Sbjct: 527 GIPHTIVIGNRSLENGEMEYKDRRDGNKVAVPVTDVVEMIKQKLA 571


>gi|313896347|ref|ZP_07829900.1| proline--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975146|gb|EFR40608.1| proline--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 570

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 121/282 (42%), Positives = 173/282 (61%), Gaps = 6/282 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLMYRAGLIRKSAGGMYTYLPLAWRTLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+LW ESGR+ +YG EM+R+ DR+++A   GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAELWEESGRWGAYGAEMMRIQDRHERAFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVMLYQIQDKFRDERRPRFGVMRSREFIMQDLYSFDKDVEGMHESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL    + A+ G IGG  S EF VLA  GE+++ C  D   +    E     
Sbjct: 181 YTNVFTRCGLNFRAVEADCGAIGGGRSEEFTVLAPEGESRIACC-DACSYAASDEKAQLR 239

Query: 241 DIISLNSI---VEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            + + +     +E+ + P+ +T  +  E  F  +P  K + A
Sbjct: 240 PLDAPDEAELPLEKVSTPHTSTIALLAE--FLKIPVEKTIKA 279



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 8/160 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIE G IF  GTKYS  M A F   DGK   +QMG YGIG  R +AA IE +HD  GI
Sbjct: 404 SRGIEAGQIFALGTKYSEAMQANFLDVDGKLKPLQMGCYGIGVGRTMAAAIEQNHDEHGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++AP+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+
Sbjct: 464 IWPRAIAPYEVVVVAVNAKVEEQLAYAEEIYEELRAAGIDVLLDDRRERAGVKFNDCDLI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G+P+++ +G K + +  +E+K R TG        E++N+A
Sbjct: 524 GYPVRIAIGPKTIENGSIEVKLRRTG--------ELVNFA 555


>gi|299823039|ref|ZP_07054925.1| proline--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816568|gb|EFI83806.1| proline--tRNA ligase [Listeria grayi DSM 20601]
          Length = 566

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 150/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE+ +H+L+LR G I Q + G+YS+LPL    L N+  IIREE
Sbjct: 1   MRQSMTFIPTLKEVPADAEVKNHQLLLRAGFIRQTASGVYSYLPLATLTLRNIERIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P LQ A+LW ESGR+  YG E++RL DRN++    GPTHEEV+T + R 
Sbjct: 61  LNKVGASEILMPALQPAELWEESGRWADYGPELMRLKDRNNRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHADLESLDKTYQDMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  + EF+ L+  GE  +  S
Sbjct: 181 YSNIFTRCGLDFRAVIADSGSIGGKETKEFMALSAIGEDTIAYS 224



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M A F   +G+ + + MG YGIG  RV++A+ E + D  G+
Sbjct: 403 AEGIEVGHIFKLGTKYSDAMKANFLDENGRANPIIMGCYGIGVSRVLSAIAEQNADENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +W   ++PF + LI +   ++      E++Y  L + G  V +DD  E+ G +FA ADL+
Sbjct: 463 VWDREISPFDLHLIPVNMKNEEQASFAEELYVSLQESGFTVLFDDRAERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P+++ VG K   +  VE+K R TG   ++  EE++N
Sbjct: 523 GLPIRITVGKK-ADEGIVEVKIRKTGEMIEVKKEELLN 559


>gi|320104617|ref|YP_004180208.1| prolyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
 gi|319751899|gb|ADV63659.1| prolyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
          Length = 595

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 115/222 (51%), Positives = 150/222 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +P L+E P  A   SH+L+L+ GMI Q   G Y++LPLG + L+ + AI+R+ 
Sbjct: 1   MRWSKALIPTLKEAPAGAVAPSHQLLLKAGMIRQLGSGAYTYLPLGWRVLNKIVAIVRKG 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM +P LQ  +LW E+GRY ++G  +++L    D+ M  GPTHEEV+TD+ R 
Sbjct: 61  MDDAGAQEMLMPALQPVELWKETGRYQTFGDLLMQLKVGGDQTMALGPTHEEVVTDLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP T YQIQ KFRDE RPRFGV+R+REFLMKDAYSFD   +    SY+ M+ +
Sbjct: 121 LIKSYRQLPMTLYQIQTKFRDEPRPRFGVLRTREFLMKDAYSFDANLDQLNQSYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y RIF   G+  + + AESGPIGGD SHEF+V A  GE  + 
Sbjct: 181 YQRIFDECGIPYVVVEAESGPIGGDSSHEFMVPASIGEDVIL 222



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 2/181 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSA 300
           + L  +V     P    +D+ N    D  P + +  +  RGIEVGH+F  GTKYS  M A
Sbjct: 370 LHLTGVVPGRDFPLDRVADLRNAVAGDPCPLSGQPMIETRGIEVGHVFKLGTKYSKAMGA 429

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF    G    + MG YGIG  R++AA +E+ HD  GI+WP ++AP+++ LI +K  +  
Sbjct: 430 TFLDETGTAQDIIMGCYGIGINRILAAAVEALHDAHGIVWPLAIAPYEVILIPLKVSNPD 489

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E +   L+  G DV  DD   Q G +F  ADL+G PL+V++G + + + K+E+K 
Sbjct: 490 LMAVVETLERELAAAGIDVLTDDRDHQPGFKFKDADLIGIPLRVVIGERGLKEGKLELKW 549

Query: 421 R 421
           R
Sbjct: 550 R 550


>gi|269217138|ref|ZP_06160992.1| proline--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129275|gb|EEZ60360.1| proline--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 569

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 113/222 (50%), Positives = 164/222 (73%), Gaps = 2/222 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ ++P ++E+P DA++ S KL+ R GM+ + + G+YS+LPLG + L+ + +IIREE + 
Sbjct: 2   SELYMPTIKEDPADADVTSAKLLYRAGMLRKEASGLYSFLPLGMRVLNKLESIIREEMDS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+ +P +QS+DLW ESGR+ +YG+EMLR+ADR+      GPTHEEV+TD+ ++ ++
Sbjct: 62  HGAQEILMPFVQSSDLWRESGRWGAYGEEMLRMADRHGNEFCLGPTHEEVVTDLVKNELR 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQLKFRDE RPRFG++RSREF+MKDAYSFD   EG   SY +M  +Y  
Sbjct: 122 SYKDLPRNLYQIQLKFRDERRPRFGLLRSREFIMKDAYSFDADREGLDASYERMREAYEN 181

Query: 184 IFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQ-VFC 223
           +  R+GL+   + A++G IGGD  + EF+VLAD GE + V+C
Sbjct: 182 VCDRMGLEYRVVVADAGQIGGDGGTEEFMVLADNGEAELVYC 223



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 99/166 (59%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVG IF  G KYS  M ATF  ADG +    MG YGIG  R +AA +E  +D  G
Sbjct: 404 SARGIEVGQIFKLGDKYSRAMGATFMDADGSEKPFIMGCYGIGVSRAMAAAVEQRNDEHG 463

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP ++AP  +++I +         A E++   L+  G +V  DD  E+ G +F   DL
Sbjct: 464 IIWPAAIAPAHVAVIPLSPKPDEVTAAAEELAGALADAGLEVVIDDRDERAGVKFNDNDL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G+P+QV+VG + + +  VE+K R TG +E ++L++V++      S
Sbjct: 524 IGWPVQVVVGKRGLKEGVVEVKDRATGEKESVALDQVLSAVERVLS 569


>gi|149190039|ref|ZP_01868316.1| prolyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148836069|gb|EDL53029.1| prolyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 571

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 120/277 (43%), Positives = 167/277 (60%), Gaps = 18/277 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGAELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-------------- 226
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +              
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSSESDYAANIEKAEAVA 240

Query: 227 -FMDFPIPSEN---TDFDDIISLNSIVEQWTAPYAAT 259
             MD   P++     D  +  ++  +VEQ+  P   T
Sbjct: 241 PAMDLAAPTQEMTLVDTPNAKTIAELVEQFDLPIEKT 277



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 107/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE ++D  GII
Sbjct: 407 RGIEVGHIFQLGKNYSEKMNCGVLGPDGKNTILEMGCYGIGVSRVVASAIEQNNDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVKEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDIELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R TG +  +++E+++ + + + +
Sbjct: 527 GIPHTIVIGDRSMDEGNFEYKNRRTGDKTPVAMEQIVAHVTSQLA 571


>gi|319892279|ref|YP_004149154.1| Prolyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161975|gb|ADV05518.1| Prolyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 567

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P +AE  SH+L+L+ G+I Q++ G+YS+LP+  + +  ++ IIR+E
Sbjct: 1   MKQSKVFIPTLREVPAEAEAISHQLLLKAGLIKQNAAGVYSYLPVATRVIHKISDIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEVVMPVLQQSELWKESGRWDAYGMELMRLRDRNQREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELRSYKQLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTDEESLMETYQNMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL   P+ A+SG IGG+ +HEF  L+  GE  +  S +
Sbjct: 181 YSTIFKRVGLNVRPVVADSGAIGGNHTHEFHALSAIGEDTIVYSNN 226



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 4/160 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  G KYS  M AT     G++  + MG YGIG  R ++A+IE  HD  GI
Sbjct: 403 AEGIEVGQVFVLGEKYSEAMKATVLNQQGREQNLTMGCYGIGVSRTLSAIIEQHHDDNGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADL 397
           IWP SV PF + LI++       R   +++Y +L  +G  DV +DD  E+ G +F  ADL
Sbjct: 463 IWPKSVTPFDVHLISVNPKKDEQRACADRLYDQL--LGTYDVLYDDRNERAGVKFNDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P++V+VG K  S+  VE+K R TG  ED+ + +++ +
Sbjct: 521 IGIPVRVVVG-KNASEGIVEVKRRDTGDSEDVHVNDLVTH 559


>gi|139439769|ref|ZP_01773160.1| Hypothetical protein COLAER_02191 [Collinsella aerofaciens ATCC
           25986]
 gi|133774919|gb|EBA38739.1| Hypothetical protein COLAER_02191 [Collinsella aerofaciens ATCC
           25986]
          Length = 573

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 157/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E+P DAE+ASH+L+LR GMI + + G+YS+LPL  +++  +  I+R+E
Sbjct: 5   MYMSKLYAPTLKEDPADAELASHRLLLRAGMIRKEAAGLYSYLPLAWRSIRKIENIVRDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A+LW ESGR D+YGKE++R  DR+ +  + GPTHEE +T + R+
Sbjct: 65  MDAAGAQELMMPIMVDAELWRESGRIDAYGKELVRFDDRHGREFVLGPTHEETVTALVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   Y IQ KFRDE RPRFG+MR REF+MKDAYSF  T E  +  Y+KM  +
Sbjct: 125 ELRSYKQLPVNLYHIQDKFRDEFRPRFGLMRGREFIMKDAYSFSATQESLQEEYDKMKQA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y  I  R  +K++P+ A+SG IGGD S E++ LAD GE   V+C +
Sbjct: 185 YANICERCYIKALPVVADSGEIGGDTSVEYMALADAGEASLVYCDE 230



 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 103/158 (65%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEV  +F  GTKYS  M ATF   DGK+  + MG YG+G  R +AAV+E  +D  G
Sbjct: 404 AARGIEVSQVFQLGTKYSEAMGATFMDEDGKEKPLIMGCYGVGVSRSLAAVVEQHNDEHG 463

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP SVAP+++++I +    + C   CE+I   L   G +V  DD  E+ G +FA  DL
Sbjct: 464 IVWPVSVAPYEVAVIPLDPKKEECATVCEQIVDGLCAEGIEVVVDDRDERPGFKFADNDL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFP QV++G + + +  VE+K R TG RED++++EV+
Sbjct: 524 MGFPYQVVLGKRGLKNGTVELKDRATGEREDVAIDEVV 561


>gi|21109942|gb|AAM38410.1| prolyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 583

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 20  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 80  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 140 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 200 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 237



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 421 ARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGI 480

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +  +L   G D   DD G + G+ FA  +
Sbjct: 481 IWPAPMAPWQVVVCVINPKQDPQVL-AAAQALLDQLLAAGLDAALDDRGLRPGAMFADME 539

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LLG P +V+V  + ++    E + R     E +    + +   H
Sbjct: 540 LLGIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRLGH 583


>gi|222151097|ref|YP_002560251.1| proline-tRNA ligase [Macrococcus caseolyticus JCSC5402]
 gi|254782906|sp|B9EBE4|SYP_MACCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222120220|dbj|BAH17555.1| proline-tRNA ligase [Macrococcus caseolyticus JCSC5402]
          Length = 568

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DA+  SH+L+L+ GMI Q + G+YS+LP+ ++ L+ + +I+REE
Sbjct: 1   MKQSKMFIPTLREVPSDADSKSHQLLLKAGMIKQVASGVYSYLPIAKRVLNKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                 +E+ +P LQ ++LW ESGR+ SYG E++R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MEAIDGVEILMPALQPSELWSESGRWQSYGAELMRMTDRHGREFALGPTHEEIITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF  T      +Y  M+ +
Sbjct: 121 ELKSYKKLPVTLFQIQNKFRDEKRPRFGLLRGREFIMKDAYSFHATEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y +IF RL L+  P+ A+SG IGG  +HEF+ LA+ GE  + C  D  D+
Sbjct: 181 YSKIFSRLNLQFRPVIADSGAIGGSHTHEFMALAEIGEDTI-CYTDGSDY 229



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIE+G +F  GTKYS  M+ATF    G+   + MG YGIG  R ++AVIE  +D KGI
Sbjct: 402 AEGIEIGQVFKLGTKYSESMNATFLNDQGRAEPMIMGCYGIGVSRTLSAVIEQHNDDKGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++ P+++ +I++    +V ++  +++Y    +   +V +DD  E+ G +F  ADL+
Sbjct: 462 IWPTAITPYEVHIISVNPKQEVQKNLADQLYDTY-RTQYEVLYDDRAERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P++V+VG K  +D  VE+K+R TG
Sbjct: 521 GIPVRVVVG-KQAADGIVEVKNRRTG 545


>gi|290893569|ref|ZP_06556552.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|290556914|gb|EFD90445.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
          Length = 568

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQGAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|78037678|emb|CAJ25423.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 621

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 275



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 459 ARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGI 518

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +  +L   G D   DD G + G+ FA  +
Sbjct: 519 IWPAPMAPWQVVVCVINPKQDPQVL-AAAQALLDQLLAAGLDAALDDRGLRPGAMFADME 577

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LLG P +V+V  + ++    E + R     E +    + +   H
Sbjct: 578 LLGIPHRVVVSERGLAAGTFEYRARTADAAESLDKAALFSRLGH 621


>gi|217964534|ref|YP_002350212.1| prolyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|254782905|sp|B8DG08|SYP_LISMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217333804|gb|ACK39598.1| prolyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|307570900|emb|CAR84079.1| proS [Listeria monocytogenes L99]
          Length = 568

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQGAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|320120274|gb|EFE27922.2| proline--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 596

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/248 (45%), Positives = 167/248 (67%), Gaps = 10/248 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ +LP L+E P DAE+ SH+L+LR G+I +   G+YS+LPLG++ L  +  +IREE
Sbjct: 24  MKMSRMYLPTLREVPSDAEVISHQLLLRAGLIRKLVSGVYSYLPLGKRVLAKIERVIREE 83

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   + E+ +  +Q ++LW ESGR++++G EM RL DRN++    GPTHEE+ T + R 
Sbjct: 84  MDAANSQEVLMSAIQPSELWKESGRWENFGPEMFRLYDRNEREFCLGPTHEEIFTSLVRD 143

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ K+RDE RPRFGV+R+REF+MKDAY+FD  P+G K SY +M+ +
Sbjct: 144 ELKSYKQLPLSLYQIQTKYRDEKRPRFGVIRAREFIMKDAYTFDRDPDGMKQSYQEMWEA 203

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF----CSKDFMD------F 230
           Y +IF RL +K   +  +SG +GG  SHEF  +A++GE+ V     C     D      F
Sbjct: 204 YTKIFDRLHMKYRVVEGDSGAMGGSDSHEFTAMAESGESTVMYAEGCDYAATDEKAECIF 263

Query: 231 PIPSENTD 238
            +P ++T+
Sbjct: 264 ELPVQDTE 271



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 110/180 (61%), Gaps = 8/180 (4%)

Query: 269 DSLPENKRV---SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           D  P+++R+   S RGIEVG+IF  GTKYS  ++ T+   DGK   V MGS+GIG  R +
Sbjct: 416 DICPQDRRLRLKSDRGIEVGNIFQLGTKYSDSLNLTYLDQDGKSKKVWMGSHGIGVSRTM 475

Query: 326 AAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           AA+IE ++D KGIIWP  VAP+   I+++N K  DQ+     E++Y   +K+G +V +DD
Sbjct: 476 AAIIEQNYDEKGIIWPLVVAPYHILITVVNAKKEDQM--QLGEQLYQEYTKLGYEVLFDD 533

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +F  ADL+G P+++ VG +   +  VE   R  G +E++ + E+       F+
Sbjct: 534 RNERAGVKFNDADLIGIPIRINVGRR-AEEGIVEFSLRRGGEKEEIPVSEIAQKVKDEFA 592


>gi|254932366|ref|ZP_05265725.1| prolyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293583922|gb|EFF95954.1| prolyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|328475041|gb|EGF45829.1| prolyl-tRNA synthetase [Listeria monocytogenes 220]
 gi|332311762|gb|EGJ24857.1| Prolyl-tRNA synthetase [Listeria monocytogenes str. Scott A]
          Length = 568

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y+ L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNVKSEEQVA--FAETLYSSLQDAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|294664482|ref|ZP_06729831.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605740|gb|EFF49042.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 621

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 275



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 459 ARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGI 518

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +  +L   G D   DD G + G+ FA  +
Sbjct: 519 IWPAPMAPWQVVVCVINPKQDPQVL-AAAQALLDQLLAAGLDAALDDRGLRPGAMFADME 577

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LLG P +V+V  + ++    E + R     E +    + +   H
Sbjct: 578 LLGIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRLGH 621


>gi|46907545|ref|YP_013934.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093943|ref|ZP_00231680.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|254824622|ref|ZP_05229623.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852630|ref|ZP_05241978.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|255522074|ref|ZP_05389311.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
 gi|300765441|ref|ZP_07075423.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|81830231|sp|Q720A3|SYP_LISMF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46880813|gb|AAT04111.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017681|gb|EAL08477.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|258605946|gb|EEW18554.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|293593860|gb|EFG01621.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300513878|gb|EFK40943.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|328468602|gb|EGF39602.1| prolyl-tRNA synthetase [Listeria monocytogenes 1816]
          Length = 568

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y+ L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYSSLQDAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|294625222|ref|ZP_06703863.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600496|gb|EFF44592.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 621

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 275



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 459 ARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGI 518

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +  +L   G D   DD G + G+ FA  +
Sbjct: 519 IWPAPMAPWQVVVCVINPKQDPQVL-AAAQALLDQLLAAGLDAALDDRGLRPGAMFADME 577

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LLG P +V+V  + ++    E + R     E +    + +   H
Sbjct: 578 LLGIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRLGH 621


>gi|226223920|ref|YP_002758027.1| prolyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|259511604|sp|C1L2M5|SYP_LISMC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225876382|emb|CAS05091.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 568

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y+ L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYSSLQDAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|71064999|ref|YP_263726.1| prolyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|114152234|sp|Q4FUL6|SYP_PSYA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71037984|gb|AAZ18292.1| prolyl-tRNA synthetase, class IIa [Psychrobacter arcticus 273-4]
          Length = 572

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/276 (42%), Positives = 170/276 (61%), Gaps = 17/276 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LM+R G+I + + G+Y WLP+G + L  V  I+REE
Sbjct: 1   MKASQFLFATLKETPSDADIASSQLMVRAGLIRKIASGLYIWLPMGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW  +GR++ YG E+LR  DR+D+  + GPTHEEV+T++ + 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQMTGRFNDYGPELLRFKDRHDRDFVLGPTHEEVITNLAQG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFGVMR+REF MKDAYSF +       +Y+ M+ +
Sbjct: 121 ELRSYKQLPITFFQIQNKFRDEIRPRFGVMRAREFTMKDAYSFHVDQASLAKTYDDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-----------------FC 223
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +                  C
Sbjct: 181 YTRIFTRLGLDFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSDSSEYAANVELAESVC 240

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           + +     +  EN D  ++ +  ++ E      A T
Sbjct: 241 TAERQPATMARENVDTVNMPTCEAVAEYLNVELATT 276



 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 8/189 (4%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  G KYS  M+ T  G DGK   + MG YG
Sbjct: 384 DIRNVNQGDPSPDGKGTLQIKRGIEVGHIFQLGNKYSQAMNCTVSGDDGKPVTLMMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE ++D  GI+WP      DS+APF+++++ +K+ ++        +Y  L
Sbjct: 444 IGVSRIIAAAIEQNNDENGIMWPLTPNISDSLAPFEVAIVPMKSKEETVMQTATALYDEL 503

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E  +R    ++ +S +
Sbjct: 504 KALGVNVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEDKYEYINRRDTEKQLLSRD 563

Query: 433 EVINYASHR 441
           EV+   S +
Sbjct: 564 EVLAKVSSK 572


>gi|323464624|gb|ADX76777.1| prolyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 567

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 157/226 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P +AE  SH+L+L+ G+I Q++ G+YS+LP+  + +  ++ IIR+E
Sbjct: 1   MKQSKVFIPTLREVPAEAEAISHQLLLKAGLIKQNAAGVYSYLPVATRVIHKISDIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEVVMPVLQQSELWKESGRWDAYGMELMRLRDRNQREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELRSYKQLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTDEESLMETYQNMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R+GL   P+ A+SG IGG+ +HEF  L+  GE  +  S +
Sbjct: 181 YSTIFKRVGLNVRPVVADSGAIGGNHTHEFHALSAIGEDTIVYSDN 226



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 4/160 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  G KYS  M AT     G++  + MG YGIG  R ++A+IE  HD  GI
Sbjct: 403 AEGIEVGQVFVLGEKYSEAMKATVLNQQGREQNLTMGCYGIGVSRTLSAIIEQHHDDNGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADL 397
           IWP SV PF + LI++       R   +++Y +L  +G  DV +DD  E+ G +F  ADL
Sbjct: 463 IWPKSVTPFDVHLISVNPKKDEQRACADRLYDQL--LGTYDVLYDDRNERAGVKFNDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P++V+VG K  S+  VE+K R TG  ED+ + +++ +
Sbjct: 521 IGIPVRVVVG-KNASEGIVEVKRRDTGDSEDVHVNDLVTH 559


>gi|294783936|ref|ZP_06749258.1| proline--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294479748|gb|EFG27527.1| proline--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 567

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SHKLMLR  MI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIVSHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYS 224



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 98/160 (61%), Gaps = 5/160 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D  G
Sbjct: 401 SARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENG 460

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP S+AP+ + +I  NIK   QV     EKIY  L     DV  DD  E+ G +F  A
Sbjct: 461 IIWPVSIAPYIVDVIPANIKNEGQVS--LAEKIYNELQAEDIDVMLDDRDEKPGFKFKDA 518

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DL+GFP +V+VG K V +  VE+K R TG   ++S  EV+
Sbjct: 519 DLIGFPFKVVVG-KRVDEGIVEVKIRRTGETLEVSESEVV 557


>gi|224499901|ref|ZP_03668250.1| prolyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 568

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQDAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|16803359|ref|NP_464844.1| prolyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501738|ref|ZP_03670045.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|81849855|sp|Q8Y7G2|SYP_LISMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|16410735|emb|CAC99397.1| prolyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 568

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQDAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|254828679|ref|ZP_05233366.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|254829924|ref|ZP_05234579.1| prolyl-tRNA synthetase [Listeria monocytogenes 10403S]
 gi|254898516|ref|ZP_05258440.1| prolyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254911993|ref|ZP_05262005.1| prolyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936320|ref|ZP_05268017.1| prolyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|284801704|ref|YP_003413569.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284994846|ref|YP_003416614.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|258601083|gb|EEW14408.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258608910|gb|EEW21518.1| prolyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|284057266|gb|ADB68207.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060313|gb|ADB71252.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|293589957|gb|EFF98291.1| prolyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 568

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQDAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|71274618|ref|ZP_00650906.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Dixon]
 gi|170730883|ref|YP_001776316.1| prolyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|226701359|sp|B0U4A7|SYP_XYLFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71164350|gb|EAO14064.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Dixon]
 gi|167965676|gb|ACA12686.1| Proline--tRNA ligase [Xylella fastidiosa M12]
          Length = 564

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 150/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+       Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLSDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGE 218



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHDVAGI 461

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP  +AP+++++  I    D V   A E + A L     D   DD G + G  FA  +L
Sbjct: 462 IWPAPIAPWQVAVCVINPKKDPVIIAAAELLLAELQSADVDTVLDDRGLRPGVMFADMEL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +G P +++V  + ++    E + R T + E++
Sbjct: 522 IGIPHRIVVSERGLAAGTYEYRARRTAMVENL 553


>gi|308233721|ref|ZP_07664458.1| prolyl-tRNA synthetase [Atopobium vaginae DSM 15829]
          Length = 575

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/235 (48%), Positives = 157/235 (66%), Gaps = 3/235 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK + P L+E+P DA+IASHKL++R GMI + + G+YS+LPL  +++  + +IIREE 
Sbjct: 6   RMSKLYAPTLKEDPTDADIASHKLLVRAGMIRKAAAGLYSYLPLAWRSIQKIESIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A EM  P L  A+LW +SGR+ +YG E++RL DR+D     GPTHEE  TD+ R+ 
Sbjct: 66  EAIDAQEMLAPILTDAELWHQSGRWGAYGPELMRLTDRHDHEYALGPTHEETFTDLIRNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY++LP T Y IQ KFRDE RPRFG+MR REF+MKD YSF    E     Y +   +Y
Sbjct: 126 LKSYKDLPVTLYHIQDKFRDERRPRFGLMRGREFIMKDGYSFCANQESLHECYEQEKDAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSE 235
             I  R GL+++P+ A+SG IGGD S EF+ LAD GE + ++C  D  D+   +E
Sbjct: 186 ATIARRCGLRAVPVVADSGQIGGDTSVEFMALADAGEAELIYC--DACDYAADTE 238



 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 107/169 (63%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE+  +F  GTKYS  M ATF   DG +    MG YGIG  R +AAV+E SHD  G
Sbjct: 402 SARGIEISQVFQLGTKYSKAMGATFMDEDGTEKPFIMGCYGIGVSRTLAAVVEQSHDEHG 461

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAP+++++I +  HD+      +++   L K G +V  DD GE+ G +F  ADL
Sbjct: 462 IIWPVSVAPYEVAVIPLDVHDETVWPVAQRLAEGLIKAGIEVIVDDRGERPGIKFNDADL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +GFP QV+ G K ++ + VE+K+R TG R ++ ++EV+++  H     R
Sbjct: 522 MGFPYQVVCGKKALAHACVEVKNRATGERTEVPVDEVVDHLVHEIVPQR 570


>gi|77747502|ref|NP_297735.2| prolyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|114152281|sp|Q9PG57|SYP_XYLFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 149/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGNQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHDVAGI 461

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP S+AP+++++  I    D V   A E + A L     D   DD G + G  FA  +L
Sbjct: 462 IWPASIAPWQVAVCVINPKKDPVITAAAEVLLAELQSADVDTVLDDRGLRPGVMFADMEL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +G P +++V  + ++    E + R T + E++
Sbjct: 522 IGIPHRIVVSERGLAAGTYEYRARHTAMVENL 553


>gi|328944057|ref|ZP_08241522.1| proline--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327492026|gb|EGF23800.1| proline--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 616

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/235 (48%), Positives = 157/235 (66%), Gaps = 3/235 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK + P L+E+P DA+IASHKL++R GMI + + G+YS+LPL  +++  + +IIREE 
Sbjct: 47  RMSKLYAPTLKEDPTDADIASHKLLVRAGMIRKAAAGLYSYLPLAWRSIQKIESIIREEM 106

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A EM  P L  A+LW +SGR+ +YG E++RL DR+D     GPTHEE  TD+ R+ 
Sbjct: 107 EAIDAQEMLAPILTDAELWHQSGRWGAYGPELMRLTDRHDHEYALGPTHEETFTDLIRNE 166

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY++LP T Y IQ KFRDE RPRFG+MR REF+MKD YSF    E     Y +   +Y
Sbjct: 167 LKSYKDLPVTLYHIQDKFRDERRPRFGLMRGREFIMKDGYSFCANQESLHECYEQEKDAY 226

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSE 235
             I  R GL+++P+ A+SG IGGD S EF+ LAD GE + ++C  D  D+   +E
Sbjct: 227 ATIARRCGLRAVPVVADSGQIGGDTSVEFMALADAGEAELIYC--DACDYAADTE 279



 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 107/169 (63%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE+  +F  GTKYS  M ATF   DG +    MG YGIG  R +AAV+E SHD  G
Sbjct: 443 SARGIEISQVFQLGTKYSKAMGATFMDEDGTEKPFIMGCYGIGVSRTLAAVVEQSHDEHG 502

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAP+++++I +  HD+      +++   L K G +V  DD GE+ G +F  ADL
Sbjct: 503 IIWPVSVAPYEVAVIPLDVHDETVWPVAQRLAEGLIKAGIEVIVDDRGERPGIKFNDADL 562

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +GFP QV+ G K ++ + VE+K+R TG R ++ ++EV+++  H     R
Sbjct: 563 MGFPYQVVCGKKALAHACVEVKNRATGERTEVPVDEVVDHLVHEIVPQR 611


>gi|28199512|ref|NP_779826.1| prolyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182682245|ref|YP_001830405.1| prolyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|81839496|sp|Q87B25|SYP_XYLFT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701358|sp|B2I7W6|SYP_XYLF2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28057627|gb|AAO29475.1| prolyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632355|gb|ACB93131.1| prolyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578519|gb|ADN62488.1| prolyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 564

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 149/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHDVAGI 461

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP  +AP+++++  I    D V   A E + A L     D   DD G + G  FA  +L
Sbjct: 462 IWPAPIAPWQVAVCVINPKKDPVITAAAEMLLAELQSADVDTVLDDRGLRPGVMFADMEL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +G P +++V  + ++    E + R T + E++
Sbjct: 522 IGIPHRIVVSERGLAAGTYEYRARRTAMVENL 553


>gi|172087674|ref|YP_204065.3| prolyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|59479390|gb|AAW85177.1| prolyl-tRNA synthetase [Vibrio fischeri ES114]
          Length = 575

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 5   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 65  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 125 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDINKEGLQKSYDAMHDA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 185 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 230



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 102/165 (61%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     A+GK+  ++MG YGIG  RVVA+ IE ++D  GI+
Sbjct: 411 RGIEVGHIFQLGTAYSEAMNCGVLDANGKNVILEMGCYGIGVSRVVASAIEQNNDEYGIV 470

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP+++APF ++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+
Sbjct: 471 WPEAIAPFTVAIVPMNMHKSERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELI 530

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R    +E + +  ++ +   + S
Sbjct: 531 GIPHTIVIGDRSMDEGHFEYKNRRANTKEAVEMANIVEHIKAQLS 575


>gi|47096944|ref|ZP_00234521.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|47014704|gb|EAL05660.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
          Length = 502

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVG 376
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQDAG 500


>gi|255030222|ref|ZP_05302173.1| prolyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 505

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 4/104 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V 
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQDAGFSVL 504


>gi|114152276|sp|Q5E719|SYP_VIBF1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 571

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDINKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 102/165 (61%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     A+GK+  ++MG YGIG  RVVA+ IE ++D  GI+
Sbjct: 407 RGIEVGHIFQLGTAYSEAMNCGVLDANGKNVILEMGCYGIGVSRVVASAIEQNNDEYGIV 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP+++APF ++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+
Sbjct: 467 WPEAIAPFTVAIVPMNMHKSERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R    +E + +  ++ +   + S
Sbjct: 527 GIPHTIVIGDRSMDEGHFEYKNRRANTKEAVEMANIVEHIKAQLS 571


>gi|9105289|gb|AAF83255.1|AE003895_6 prolyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 582

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 149/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 19  MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 79  MNRAGAVEMLLPTIQPRELWEESERWEKFGNQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 139 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE
Sbjct: 199 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGE 236



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD  GI
Sbjct: 420 ARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHDVAGI 479

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP S+AP+++++  I    D V   A E + A L     D   DD G + G  FA  +L
Sbjct: 480 IWPASIAPWQVAVCVINPKKDPVITAAAEVLLAELQSADVDTVLDDRGLRPGVMFADMEL 539

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +G P +++V  + ++    E + R T + E++
Sbjct: 540 IGIPHRIVVSERGLAAGTYEYRARHTAMVENL 571


>gi|320529253|ref|ZP_08030345.1| prolyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138883|gb|EFW30773.1| prolyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 570

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/282 (42%), Positives = 173/282 (61%), Gaps = 6/282 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+L+ R G+I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLLYRAGLIRKSAGGMYTYLPLAWRTLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+LW ESGR+ +YG EM+R+ DR+++A   GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAELWEESGRWGAYGAEMMRIQDRHERAFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVMLYQIQDKFRDERRPRFGVMRSREFIMQDLYSFDKDVEGMHESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL    + A+ G IGG  S EF VLA  GE+++ C  D   +    E     
Sbjct: 181 YTNVFTRCGLNFRAVEADCGAIGGGRSEEFTVLAPEGESRIACC-DACSYAASDEKAQLR 239

Query: 241 DIISLNSI---VEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            + + +     +E+ + P+ +T  +  E  F  +P  K + A
Sbjct: 240 PLDAPDEAELPLEKVSTPHTSTIALLAE--FLKIPVEKTIKA 279



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 8/160 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIE G IF  GTKYS  M A F   DGK   +QMG YGIG  R +AA IE +HD  GI
Sbjct: 404 SRGIEAGQIFALGTKYSEAMQANFLDVDGKLKPLQMGCYGIGVGRTMAAAIEQNHDEHGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++AP+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+
Sbjct: 464 IWPRAIAPYEVVVVAVNAKVEEQLAYAEEIYEELRAAGIDVLLDDRRERAGVKFNDCDLI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G+P+++ +G K + +  +E+K R TG        E++N+A
Sbjct: 524 GYPVRIAIGPKTIENGSIEVKLRRTG--------ELVNFA 555


>gi|54310060|ref|YP_131080.1| prolyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|81828683|sp|Q6LN48|SYP_PHOPR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46914499|emb|CAG21278.1| putative prolyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 571

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 151/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S D
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSSD 226



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+    G DGK   ++MG YGIG  R+VA+ IE ++D  GII
Sbjct: 407 RGIEVGHIFQLGTNYSKKMNCNVLGPDGKSATLEMGCYGIGVSRIVASAIEQNNDENGII 466

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP ++APF+++++ +  A  +  + A E +YA L+  G +V +DD  E+ G  F   +L+
Sbjct: 467 WPTALAPFQVAIVPMNMAKSEEVKAAAESLYAELTAAGIEVLFDDRKERPGVMFKDIELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G++ + + ++E K R  G +  + + +V+     + +
Sbjct: 527 GIPHTIVIGNRSLENGEMEYKDRRDGNKVAVPVADVVEMIKQKLA 571


>gi|71899288|ref|ZP_00681449.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71730914|gb|EAO32984.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 303

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 150/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+       Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLSDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGE 218


>gi|325923311|ref|ZP_08184984.1| prolyl-tRNA synthetase, family II [Xanthomonas gardneri ATCC 19865]
 gi|325546238|gb|EGD17419.1| prolyl-tRNA synthetase, family II [Xanthomonas gardneri ATCC 19865]
          Length = 564

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 151/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF V+A +GE
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAASGE 218



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT    +GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGSQYAQALQATVIDENGKLAVMKMGCYGIGISRIVAAAIEQNHDEAGI 461

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A   +   L   G +   DD G + G+ FA  +
Sbjct: 462 IWPAPMAPWQVVVCVINPKQDPQVI-AAAGALLDELIAAGIEAALDDRGLRPGAMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LLG P +V+V  + ++    E + R     E++
Sbjct: 521 LLGIPHRVVVSERGLAAGTFEYRARTAEAAENL 553


>gi|93005293|ref|YP_579730.1| prolyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|114152235|sp|Q1QDK7|SYP_PSYCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|92392971|gb|ABE74246.1| prolyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 572

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LM+R G+I + + G+Y WLP+G + L  V  I+REE
Sbjct: 1   MKASQFLFATLKETPSDADIASSQLMVRAGLIRKIASGLYIWLPMGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW  +GR++ YG E+LR  DR+D+  + GPTHEEV+T++ + 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQLTGRFNDYGPELLRFKDRHDRDFVLGPTHEEVITNLAQG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFGVMR+REF MKDAYSF +       +Y++M+ +
Sbjct: 121 ELRSYKQLPITFFQIQNKFRDEIRPRFGVMRAREFTMKDAYSFHVDQASLAKTYDEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YTRIFTRLGLDFRAVQADTGSIGGFASHEFHVLADSGEDDIAFS 224



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 8/189 (4%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  G KYS  M+ T  G DGK   + MG YG
Sbjct: 384 DIRNVHEGDPSPDGKGTLQIKRGIEVGHIFQLGDKYSQAMNCTVSGEDGKPVTLMMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           IG  R++AA IE ++D  GI+WP      DS+APF+++++ +K+ +    +    +Y  L
Sbjct: 444 IGVSRIIAAAIEQNNDENGIMWPSTPDISDSLAPFEVAIVPMKSKEDTVMETATALYEEL 503

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E  +R    ++ +S +
Sbjct: 504 KALGINVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEDKYEYVNRRDSEKQLLSRD 563

Query: 433 EVINYASHR 441
           EVI   S +
Sbjct: 564 EVIAKVSGK 572


>gi|188997600|ref|YP_001931851.1| prolyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226701347|sp|B2V6W5|SYP_SULSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188932667|gb|ACD67297.1| prolyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 564

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 153/226 (67%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+F+P L+ENP DA + SH  ++R G I   S GIY +LPLG K L  +  IIR+ 
Sbjct: 1   MLASKFFMPTLKENPSDAVVPSHIYLVRGGFIRSLSAGIYEYLPLGLKVLRKIENIIRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+ +P L  A+LW E+GR+  YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDDSGALEVLLPILTPAELWKETGRWHVYGKELFRLKDRKDAEFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YSFD++ E +K +Y  M  +
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYSFDVSEEDAKKTYEVMKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y +IF  LGL  + + A+ G IGG  SHEF+V   +GE   V+C K
Sbjct: 181 YHKIFKELGLDYLMVEADVGAIGGKFSHEFVVKVPSGEAHIVYCEK 226



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G+EVGHIF  GTKYS  M A F   DGK+  + MG YGIG  R+++A++E  HD KGIIW
Sbjct: 402 GLEVGHIFLLGTKYSESMKAYFVDKDGKEKSIIMGCYGIGVSRLISAIVEQYHDDKGIIW 461

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P+++APF + ++ +   DQ   +    IY +L + G DV  D+  E  G++F  ADL+G 
Sbjct: 462 PENLAPFNVHILVLNPKDQESLNVGFDIYKKLKEKGLDVLLDERDESAGAKFKDADLIGI 521

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           P ++++G K + + KVE + R   I+E + ++ +IN
Sbjct: 522 PHRIVIG-KALKEGKVEYQKRDGSIKELVDVKLIIN 556


>gi|166713436|ref|ZP_02244643.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 564

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 150/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGSQYAQALQATVIDEGGKVAVMKMGCYGIGISRIVAAAIEQNHDDAGI 461

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +   L   G D   DD G + G+ FA  +
Sbjct: 462 IWPAPMAPWQVVVCVINPKQDAQVV-SAAQALLDELIAAGLDAALDDRGLRPGAMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LLG P +V+V  + ++    E + R     E++
Sbjct: 521 LLGIPHRVVVSERGLAAGTFEYRARTAAAAENL 553


>gi|170288224|ref|YP_001738462.1| prolyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|226701351|sp|B1L8Y1|SYP_THESQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170175727|gb|ACB08779.1| prolyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 577

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 156/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKTAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELRSYRQLPLVVYQVANKYRDEIRPRFGLLRAREFIMKDAYSFHSSWESLDETYELFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y RI  RLG+K + + AE+G IGG+ SHEF+V A  GET V FC K
Sbjct: 181 YSRIMERLGVKYMVIEAETGAIGGNASHEFVVPAKIGETNVLFCEK 226



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +GIE+GHIF  GTKYS  M A F   +G+     MG YG G  R +AAV+E  HD  G
Sbjct: 400 ATKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENG 459

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +IWP S+AP+ + +  +  +D   +   EKIY  LS+ G +V  DD     G +F  ADL
Sbjct: 460 MIWPLSIAPYTVVVDILNMNDAEQKQVGEKIYQVLSEKGEEVVLDDREVSPGFKFKDADL 519

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +GFP+++ VG + + +  VE+K R +
Sbjct: 520 IGFPIRINVG-RSLKEGVVELKKRYS 544


>gi|197334450|ref|YP_002155444.1| prolyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|226701355|sp|B5FBD6|SYP_VIBFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|197315940|gb|ACH65387.1| prolyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 571

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 102/165 (61%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     A+GK+  ++MG YGIG  RVVA+ IE ++D  GI+
Sbjct: 407 RGIEVGHIFQLGTAYSEAMNCGVLDANGKNVILEMGCYGIGVSRVVASAIEQNNDEYGIV 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP+++APF ++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+
Sbjct: 467 WPEAIAPFTVAIVPMNMHKSERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R    +E + +  ++ +   + S
Sbjct: 527 GIPHTIVIGDRSMDEGNFEYKNRRANTKEAVEMANIVEHIKAQLS 571


>gi|260892490|ref|YP_003238587.1| prolyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260864631|gb|ACX51737.1| prolyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 574

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/265 (44%), Positives = 168/265 (63%), Gaps = 3/265 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + + +P L+E P +AE+ASH+L+LR G I + + GIY+ LPLG++ L  + +I+REE
Sbjct: 1   MRLTTWLVPTLREVPAEAEVASHRLLLRAGFIRRVAAGIYTLLPLGKRVLAKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G  E+ +P LQ A+LW  SGR++ YG E+ RL DR+ +    GPTHEE++T +  +
Sbjct: 61  MNRAGGQEILMPILQPAELWHRSGRWEVYGPELFRLKDRHGRDFCLGPTHEEMITALVAA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  K+RDE RPRFG++R REF+MKD YSFD    G + SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIGNKYRDERRPRFGLLRGREFIMKDLYSFDRDWAGLEESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDF 239
           Y R+F R+GL    + A++G IGG +SHEF+ LAD GE   V+C      +    E    
Sbjct: 181 YTRVFTRVGLNFRAVEADTGAIGGSVSHEFMALADAGEAVVVYCPDAACGYAANVEKA-- 238

Query: 240 DDIISLNSIVEQWTAPYAATSDVHN 264
           + + SL  I E+      AT  V +
Sbjct: 239 ESLPSLEEIGEEGPMELVATPGVRS 263



 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 7/189 (3%)

Query: 255 PYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+      D  P   +  +S RGIEVG IF  G KYS  ++A +    G+   +
Sbjct: 376 PVQNVADIRQVSEGDPCPRCGQPLLSVRGIEVGQIFQLGDKYSRALNAYYLDEKGEKRPI 435

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R +AAV+E  HD +GIIWP +VAPF++ ++ +   +   R+  E+IY  L
Sbjct: 436 IMGCYGIGITRTMAAVVEQHHDEEGIIWPLAVAPFQVLVLPVNYEEVPQREVAEEIYNLL 495

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IRED 428
            + G +V  DD  E+ G +F  ADL+G+PL++ VG +  ++ KVE+K R TG    + +D
Sbjct: 496 REKGIEVLLDDREERPGVKFKDADLVGYPLRITVG-RHAAEGKVELKLRRTGETWLVDKD 554

Query: 429 MSLEEVINY 437
             LE+V  +
Sbjct: 555 EVLEKVAAF 563


>gi|254992869|ref|ZP_05275059.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 568

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 147/218 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGE 218



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y+ L   G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYSSLQDAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGVVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|315282166|ref|ZP_07870634.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313614198|gb|EFR87874.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 308

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234


>gi|313887818|ref|ZP_07821498.1| proline--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846161|gb|EFR33542.1| proline--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 567

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 158/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEIASHK +LR GMI + + G+Y++LPLG +++  +  I+R+E
Sbjct: 1   MRLSKLYMPTLREDPQDAEIASHKFLLRAGMIRKSASGVYTYLPLGYRSIRKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +  +Q A++W ESGR++ +G EM +L DRND+    GPT EE  T + R 
Sbjct: 61  MDKAGAMEILMSAIQPAEIWKESGRWEKFGPEMFKLRDRNDREFCLGPTAEEYFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD +PE    +Y  M+ +
Sbjct: 121 EVKSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDTSPETLHTAYMNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF RL L    +  ++G +GG  SHEFI L++TGE  +  S+
Sbjct: 181 YEKIFDRLELDYKIVEGDNGAMGGTGSHEFIALSETGEGVIVYSE 225



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 5/159 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG+IF  GTKYS  ++AT+   +GK +Y  MGSYG+G  R V AVIE +HD  GI
Sbjct: 401 ARGIEVGNIFKLGTKYSEALNATYLDENGKANYFYMGSYGVGVTRSVTAVIEQNHDDNGI 460

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP SVAP++  ++++N K  +QV     EKIY  L   G +V  DD  E+ G +F   D
Sbjct: 461 IWPISVAPYEAIVTIVNTKDEEQVA--LGEKIYKELEAKGVEVLLDDRKERPGVKFKDRD 518

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G PL++  G K   +S VE   R      ++S +E I
Sbjct: 519 LIGIPLRITCGKK-SGESIVEYSTRREMENSEISADEAI 556


>gi|110833600|ref|YP_692459.1| prolyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110646711|emb|CAL16187.1| Prolyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 566

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/267 (46%), Positives = 169/267 (63%), Gaps = 9/267 (3%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE +R GA
Sbjct: 1   MLATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREEMDRAGA 60

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+ + SY+
Sbjct: 61  QEVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRNELHSYK 120

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +Y  IF 
Sbjct: 121 QLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRAYCAIFD 180

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           RLGL   P+ A++G IGG  SHEF VLA++GE  +  S D  D+   + N +  + ++  
Sbjct: 181 RLGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFS-DGSDY---AANVELAEALAPT 236

Query: 247 SIVEQWTAPYAATS--DVHNEKLFDSL 271
           S   +  AP AA    D  N K  + L
Sbjct: 237 S---ERPAPGAAIEKVDTPNAKTIEEL 260



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 108/169 (63%), Gaps = 4/169 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  + AT    +GK   + MG YGIG  RVVAA IE ++D +GII
Sbjct: 399 RGIEVGHIFQLGTKYSEALGATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGII 458

Query: 340 WPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           WP+++APF+++L  +NIK   +  R+  EK+YA L+ +G +V +DD   E++G + A  +
Sbjct: 459 WPEAIAPFQVALVPVNIKKSPR-ERELAEKLYAELTAMGIEVLFDDREKERLGVKLADTE 517

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           LLG P ++++  + + +  +E K R    + +++++E++ +   +   N
Sbjct: 518 LLGIPHRIVIAERGMDNGVLEYKGRRDADKTEVAMDEIVAFLKEKMGMN 566


>gi|160946442|ref|ZP_02093651.1| hypothetical protein PEPMIC_00402 [Parvimonas micra ATCC 33270]
 gi|158447558|gb|EDP24553.1| hypothetical protein PEPMIC_00402 [Parvimonas micra ATCC 33270]
          Length = 567

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 159/238 (66%), Gaps = 1/238 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y++P L+E+P++AEI SHKL+LR GMI + + GIYS+LPLG + +  V  I+REE
Sbjct: 1   MKMKRYYMPTLREDPQEAEIISHKLLLRAGMIRKSAAGIYSYLPLGYRTIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +  LQ  ++W ESGR+ ++G EM ++ DRN++    GPT EE  T +   
Sbjct: 61  MDRMGGYEILMSALQPKEIWEESGRWQTFGPEMFKVKDRNEREFCLGPTAEEYFTTLISG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD++PE    SY +M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDVSPEMMMESYKEMWKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y ++F+RLGL    +  ++G +GG+ SHEFI L+D GE  V C  D   +    E  +
Sbjct: 181 YEKVFNRLGLNYKIVAGDAGAMGGNSSHEFIALSDVGEG-VICYCDESGYAATDEKAE 237



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 98/160 (61%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG+IF  GTKYS  ++ATF   +G   Y  MGS+GIG  R + A+IE ++D KGI
Sbjct: 401 ARGIEVGNIFQLGTKYSKALNATFLDENGVSQYFWMGSHGIGITRSITAIIEQNNDEKGI 460

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  VAP+   ++++NI   +Q+     EKI+  L   G +V  DD  E+IG +F   D
Sbjct: 461 IWPIQVAPYHAIVTVVNINDEEQM--KLGEKIHDELEAQGVEVMLDDRKERIGVKFNDRD 518

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G PL++ VG K  +++ +E   R      +MS E+ IN
Sbjct: 519 LIGIPLRITVGKK-ANENIIEFSTRREMENVEMSSEDAIN 557


>gi|296330872|ref|ZP_06873347.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674390|ref|YP_003866062.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151877|gb|EFG92751.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412634|gb|ADM37753.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 564

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIQNIQQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKIDAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    +Y KM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYQKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R G+   P+ A+SG +GG  +HEF+ L+  GE  +  S +
Sbjct: 181 YSNIFARCGINVRPVIADSGAMGGKDTHEFMALSAIGEDTIAYSDE 226



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 102/163 (62%), Gaps = 1/163 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GT+YS  M+AT+   +G+   + MG YG+G  R ++A+ E  HD KG+
Sbjct: 403 AEGIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGVGVSRTLSAIAEQHHDDKGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+ + ++ +   +   R+  EK+YA L   G +V +DD  E+ G +FA +DL+
Sbjct: 463 IWPKSVAPYDLHILALNMKNDSQRELAEKLYANLKAEGYEVLYDDRAERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G P+++ VG K   +  VE+K R TG   ++S++E+  + S +
Sbjct: 523 GLPIRITVG-KRADEGIVEVKIRQTGESTEVSVDELTAFISKQ 564


>gi|261405336|ref|YP_003241577.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261281799|gb|ACX63770.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 575

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 153/226 (67%), Gaps = 2/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  +  IIR+E
Sbjct: 1   MRQSQLLMTTMRDVPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDAAGGQELLMPAVQPAELWKESGRYDVYGAELIRLYDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD   EG   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWEGLDASYRNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGE-TQVFCS 224
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE T V CS
Sbjct: 181 YERIFSRCGLMFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCS 226



 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  GTKYS  M+  +  ADG++  + MG YGIG  RV+AA+ E     + ++
Sbjct: 410 RGIELGHVFKLGTKYSDAMNGKYLDADGREKPLIMGCYGIGVSRVMAAIAEQRISDERLV 469

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAPF++ +I +   D+      E IY  LS  G +   DD  E+ G +F  ADL G
Sbjct: 470 WPMSVAPFRVHIIPVAVKDETQMQLAEHIYRELSGAGLEPLLDDRDERAGVKFKDADLAG 529

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PL++IVG +  +  +VE      GI+  M  EE I 
Sbjct: 530 APLRIIVG-RGAASGEVEWMGE-DGIKISMPAEEAIQ 564


>gi|166367159|ref|YP_001659432.1| prolyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|189083503|sp|B0JTD7|SYP_MICAN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166089532|dbj|BAG04240.1| proline-tRNA ligase [Microcystis aeruginosa NIES-843]
          Length = 603

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/229 (51%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHK ++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQQLFVTLREDPAEAEIPSHKCLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNKAGAQECLLPQLQPAELWQESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+L  E  K +Y  M
Sbjct: 121 ARDLIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNLDEECLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            ++Y  IF R GL    + A+SG IGG  S EF+VLAD GE +V  + D
Sbjct: 181 DIAYRNIFRRCGLAFRAVEADSGAIGGSASQEFMVLADAGEDEVLFTAD 229



 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 5/174 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  G KYS  M+A +    G+   + MG YGIG  R+  A +E 
Sbjct: 427 PNQTLQSARGIEVGHIFQLGYKYSQAMNAFYTNEAGESTPICMGCYGIGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++AP++  ++  N+   +QV     E +Y  L++ G +   DD  E+ G
Sbjct: 487 SYDKDGIIWPVAIAPYQAIVVIPNLADAEQV--KTAESLYNELNQAGIETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F  ADL+G P +++ G K +   KVE+  R +    ++++ EV++Y     S
Sbjct: 545 VKFKDADLIGIPYRIVTG-KSLKSGKVELVERASKKASEVAINEVVSYLKTAIS 597


>gi|16800424|ref|NP_470692.1| prolyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|81853975|sp|Q92C35|SYP_LISIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|16413829|emb|CAC96587.1| prolyl-tRNA synthetase [Listeria innocua Clip11262]
          Length = 568

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLATLTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G+
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGLSRILSAIAEQSNDENGL 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L K G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAESLYDSLQKAGFSVLIDDRTERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGIVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|21230114|ref|NP_636031.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769896|ref|YP_244658.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|81304150|sp|Q4UQN5|SYP_XANC8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81860394|sp|Q8PCS4|SYP_XANCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21111643|gb|AAM39955.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575228|gb|AAY50638.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 564

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 152/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYTPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+RIF RLGL+   ++A+SG IGGD S EF V+A++GE
Sbjct: 181 YIRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAESGE 218



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G+KY+  + AT    +GK   ++MG YGIG  R+VAA IE +HD  GI+
Sbjct: 403 RGIEVGHVFQLGSKYAEALQATVLDENGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGIV 462

Query: 340 WPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP  +AP+K  + +IN K   QV   A + +   L   G D   DD G + G+ FA  +L
Sbjct: 463 WPAPMAPWKVVVCVINPKQDAQVAAAAGD-LLEELIAAGIDAALDDRGLRPGAMFADMEL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LG P +V+V  + ++    E + R     E++
Sbjct: 522 LGVPHRVVVSERGLAAGTFEYRARTAESAENL 553


>gi|313623934|gb|EFR94040.1| prolyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 568

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLATLTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234



 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G+
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGLSRILSAIAEQSNDENGL 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L K G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAESLYDSLQKAGFSVLIDDRTERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGIVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|188993111|ref|YP_001905121.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|226701356|sp|B0RVJ2|SYP_XANCB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167734871|emb|CAP53083.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 564

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 152/218 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYTPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+RIF RLGL+   ++A+SG IGGD S EF V+A++GE
Sbjct: 181 YIRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAESGE 218



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G+KY+  + AT    +GK   ++MG YGIG  R+VAA IE +HD  GI+
Sbjct: 403 RGIEVGHVFQLGSKYAEALQATVLDENGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGIV 462

Query: 340 WPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP  +AP+K  + +IN K   QV   A + +   L   G D   DD G + G+ FA  +L
Sbjct: 463 WPAPMAPWKVVVCVINPKQDAQVAAAAGD-LLEELIAAGIDAALDDRGLRPGAMFADMEL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LG P +V+V  + ++    E + R     E++
Sbjct: 522 LGIPHRVVVSERGLAAGTFEYRARTAESAENL 553


>gi|329925255|ref|ZP_08280198.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328940088|gb|EGG36421.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 575

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 153/226 (67%), Gaps = 2/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  + AIIR+E
Sbjct: 1   MRQSQLLMTTMRDVPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIEAIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDSAGGQELLMPAVQPAELWKESGRYDVYGAELIRLHDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD    G   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWGGLDASYRNMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGE-TQVFCS 224
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE T V CS
Sbjct: 181 YERIFRRCGLMFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCS 226



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  GTKYS  M+  +  ADG++  + MG YGIG  RV+AA+ E       ++
Sbjct: 410 RGIELGHVFKLGTKYSDAMNGKYLDADGREKPLIMGCYGIGVSRVMAAIAEQRISDGRLV 469

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAPFK+ +I +   D+      E IY  LS  G +   DD  E+ G +F  ADL G
Sbjct: 470 WPMSVAPFKVHIIPVAVKDETQMQLAEHIYRELSGAGLEPLLDDRDERAGVKFKDADLAG 529

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PL++IVG +  +  +VE      GI+  + +EE I 
Sbjct: 530 APLRIIVG-RGAASGEVEWMGE-DGIKISLPVEEAIQ 564


>gi|159030425|emb|CAO91326.1| proS [Microcystis aeruginosa PCC 7806]
          Length = 603

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 117/229 (51%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHK ++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQQLFVTLREDPAEAEIPSHKCLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNKAGAQECLLPQLQPAELWQESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+L  E  K +Y  M
Sbjct: 121 ARDLIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNLDEECLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            ++Y  IF R GL    + A+SG IGG  S EF+VLAD GE +V  + D
Sbjct: 181 DIAYRNIFRRCGLAFRAVEADSGAIGGSASQEFMVLADAGEDEVLFTAD 229



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 5/168 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  G KYS  M+A +    G+   + MG YGIG  R+  A +E 
Sbjct: 427 PNQTLQSARGIEVGHIFQLGYKYSQAMNAFYTNEAGESTPICMGCYGIGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++AP++  ++  N+   +QV     E +Y  L++ G +   DD  E+ G
Sbjct: 487 SYDKDGIIWPVAIAPYQAIVVIPNLADAEQV--KTAESLYNELNQAGIETLLDDRNERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +F  ADL+G P +++ G K +   KVE+  R +    ++++ EV++Y
Sbjct: 545 VKFKDADLIGIPYRIVTG-KSLKSGKVELVERASKKASEVAINEVVSY 591


>gi|330445168|ref|ZP_08308820.1| prolyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489359|dbj|GAA03317.1| prolyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 571

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAFSTE 226



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVA+ IE ++D  GII
Sbjct: 407 RGIEVGHIFQLGTTYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVASAIEQNNDENGII 466

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF++S++ +  A  +  ++A EK+YA L+  G DV +DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVSIVPMNMAKSEEVKEAAEKLYAELTAAGIDVLFDDRKERPGVMFADHELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G++ + + ++E K+R  G +E +++ +V+ +   + +
Sbjct: 527 GIPHTIVIGNRSLENGEMEYKNRRAGTKEAVAVNDVVEFLKQKLA 571


>gi|313638094|gb|EFS03361.1| prolyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 568

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFVALSDIGEDTIAYS 224



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G+
Sbjct: 403 AEGIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGL 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L + G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKKISPFDLHLIPVNMKSEEQVA--FAETLYQSLQQAGFSVLIDDRSERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGIVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|313633402|gb|EFS00238.1| prolyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 568

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFVALSDIGEDTIAYS 224



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G+
Sbjct: 403 AEGIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGL 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L + G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKKISPFDLHLIPVNMKSEEQVA--FAETLYQSLQQAGFSVLIDDRSERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGIVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|285019440|ref|YP_003377151.1| prolyl-tRNA synthetase [Xanthomonas albilineans GPE PC73]
 gi|283474658|emb|CBA17157.1| probable prolyl-trna synthetase protein [Xanthomonas albilineans]
          Length = 564

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 147/218 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  ++REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR+  +G  MLR+ DR ++   Y PT EE   D  R 
Sbjct: 61  MNRAGALEVVFPTIQPRELWDATGRWKKFGDLMLRIRDRKEQDYCYSPTAEEAAADFARH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L+       Y  M  +
Sbjct: 121 ELNSYKQLPVNFYQIQSKFRDEIRPRFGVMRAREFLMKDAYSFHLSDTDLAREYENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+   ++A+SG IGGD S EF VLAD+GE
Sbjct: 181 YHRIFTRLGLQFRAVQADSGDIGGDASQEFHVLADSGE 218



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 1/153 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G +Y+  + AT    +GK   + MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGRQYAQALDATVLDENGKTVAMAMGCYGIGISRIVAAAIEQNHDAAGI 461

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            WP  +AP+ +++  I   HD     A + + A L + G D   DD G + G+ FA  +L
Sbjct: 462 RWPQPMAPWAVAICVINPKHDPAIDAAGDALLADLQQAGLDAILDDRGLRAGTMFADIEL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +G P +V+V  + ++    E + R  G  E ++
Sbjct: 522 IGIPHRVVVSERGLAAGTFEYRARSGGDPESLN 554


>gi|269101961|ref|ZP_06154658.1| prolyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161859|gb|EEZ40355.1| prolyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 572

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEIISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHARPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAFSTE 226



 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 113/166 (68%), Gaps = 1/166 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVA+ IE ++D  GII
Sbjct: 407 RGIEVGHIFQLGTTYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVASAIEQNNDENGII 466

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF++S++ +  A  +  ++A EK+YA L+  G DV +DD  E+ G  FA  +L+
Sbjct: 467 WPDAIAPFQVSIVPMNMAKSEEVKEAAEKLYADLTAAGIDVLFDDRKERPGVMFADHELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P  +++G++ + + ++E K+R TG +E++++ +++ + + + +N
Sbjct: 527 GIPHTIVIGNRSLENGEMEYKNRRTGTKENVAVTDIVAFVTSKLAN 572


>gi|90580993|ref|ZP_01236794.1| prolyl-tRNA synthetase [Vibrio angustum S14]
 gi|90437871|gb|EAS63061.1| prolyl-tRNA synthetase [Vibrio angustum S14]
          Length = 571

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAFSTE 226



 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+     A+GK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNAYSEKMNCGVLDANGKNTILEMGCYGIGVSRVVASAIEQNHDENGII 466

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF +S++ +  A  +  ++A EK+YA L+  G +V +DD  E+ G  FA  +LL
Sbjct: 467 WPDALAPFHVSIVPMNMAKSEEVKEAAEKLYADLTAAGIEVLFDDRKERPGVMFADHELL 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G++ + + ++E K+R TGI+E +++ +V+ +   + +
Sbjct: 527 GVPHTIVIGNRSLENGEMEYKNRRTGIKEAVAVNDVVAFLKQKMA 571


>gi|303232756|ref|ZP_07319441.1| proline--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302481242|gb|EFL44317.1| proline--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 574

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 110/221 (49%), Positives = 151/221 (68%), Gaps = 1/221 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ + P L+ENP DA+IASH+L+ R GMI + + G+Y++LPL  +++  +  IIR+E   
Sbjct: 8   SRLYAPTLKENPVDADIASHRLLCRAGMIRKAASGLYTYLPLAWRSILKIEGIIRDEMEA 67

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               EM  P L SA+LW +SGR+D YG E++RL DR+D     GPTHEE   D+ RS ++
Sbjct: 68  IDCQEMLTPILTSAELWHQSGRWDVYGPELMRLTDRHDHEYALGPTHEETYVDLVRSELR 127

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+ LP T Y IQ KFRDE RPRFG+MRSREF+MKDAYSF  T E  +  Y+    +Y  
Sbjct: 128 SYKQLPVTLYHIQDKFRDERRPRFGLMRSREFIMKDAYSFCATQESLQQCYDDQKQAYAN 187

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           +  R G++++P+ A+SG IGGD S EF+ LAD GE + V+C
Sbjct: 188 VARRCGIRALPVVADSGQIGGDTSVEFMALADAGEAELVYC 228



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 102/172 (59%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE+  +F  GTKYS  M ATF   DG +    MG YGIG  R +AAV+E  +D  G
Sbjct: 402 SARGIEISQVFQLGTKYSSAMGATFMDEDGTEKPFIMGCYGIGVSRTLAAVVEQHYDDHG 461

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAP+++ +I +  +D V       I  +L+  G +V  DD   + G +F  ADL
Sbjct: 462 IIWPISVAPYEVEVIALDTNDDVIWPQATAIAEKLTARGIEVIVDDRELRPGVKFNDADL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +GFP QV+ G K +    VE+K R  G R +++L+ +++    R ++++ +L
Sbjct: 522 MGFPYQVVCGKKALERGCVELKCRADGSRVEVALDAIVSELEQRIAHDKELL 573


>gi|116872750|ref|YP_849531.1| prolyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463747|sp|A0AIC0|SYP_LISW6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116741628|emb|CAK20752.1| prolyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 568

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AIIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLLPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y  M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYKLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L++ GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSEIGEDTIAYS-DASDYAANTE 234



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G+
Sbjct: 403 AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGL 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L K G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKQISPFDLHLIPVNMKSEEQVA--FAESLYDSLQKAGFSVLIDDRAERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGIVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|313609001|gb|EFR84741.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
          Length = 344

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L++ GE  +  S D  D+   +E
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSEIGEDTIAYS-DASDYAANTE 234


>gi|218438508|ref|YP_002376837.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|226699136|sp|B7K9K1|SYP_CYAP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218171236|gb|ACK69969.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 600

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+R+E
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALEDRQERELGLGPTHEEVITFI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD  PEG K +Y  M
Sbjct: 121 AREMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDTDPEGLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D
Sbjct: 181 DKAYRNILRRCGLAFRAVDADSGAIGGSGSQEFMVLADAGEDEVLYTDD 229



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 96/159 (60%), Gaps = 1/159 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVGHIF  GTKYS  M AT+    G++  + MG YGIG  R+  + +E S+D  G
Sbjct: 433 SARGIEVGHIFQLGTKYSHAMGATYTNEQGEEMPLVMGCYGIGVSRLAQSAVEQSYDKDG 492

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP ++AP+   ++    +D    +  EK+Y  L+  G +   DD  E+ G +F  ++L
Sbjct: 493 IIWPVAIAPYHAIVVIPNINDPQQVEVAEKLYTELNAAGIETLLDDRDERAGVKFKDSEL 552

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G P +++ G + + + K+E+  R T   +D+ ++EV++
Sbjct: 553 VGIPYRIVTG-RSLKEGKLEVVERATKKSQDIPIDEVVS 590


>gi|289434600|ref|YP_003464472.1| hypothetical protein lse_1235 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170844|emb|CBH27386.1| proS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 568

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFLALSDIGEDTIAYS 224



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G+
Sbjct: 403 AEGIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGL 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L + G  V  DD  E+ G +FA AD
Sbjct: 463 VWDKKISPFDLHLIPVNMKSEEQVA--FAETLYQSLQQAGFSVLIDDRSERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L+G P+++ VG K  ++  VE+K R TG        E+I        N  P+L
Sbjct: 521 LIGLPIRITVGKK-AAEGIVEVKIRKTG--------EMIEVRQDELLNTLPIL 564


>gi|122879049|ref|YP_199448.6| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|162319805|ref|YP_449766.2| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578630|ref|YP_001915559.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|114152279|sp|Q2P7I5|SYP_XANOM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152280|sp|Q5H4Q7|SYP_XANOR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701357|sp|B2SPG9|SYP_XANOP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188523082|gb|ACD61027.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 564

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 150/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 218



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 402 ARGIEVGHVFQLGSQYAQALQATVIDEGGKVAVMKMGCYGIGISRIVAAAIEQNHDDAGI 461

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +   L   G D   DD G + G+ FA  +
Sbjct: 462 IWPAPMAPWQVVVCVINPKQDAQVV-SAAQALLDELIAAGLDAALDDRGLRPGAMFADME 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LLG P +V+V  + ++    E + R     E++
Sbjct: 521 LLGIPHRVVVSERGLAAGTFEYRARTAAAAENL 553


>gi|313619139|gb|EFR90927.1| prolyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 409

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLAILTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S D  D+   +E
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYS-DASDYAANTE 234


>gi|16078720|ref|NP_389539.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309535|ref|ZP_03591382.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313859|ref|ZP_03595664.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318782|ref|ZP_03600076.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323054|ref|ZP_03604348.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315424|ref|YP_004207711.1| prolyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|11134893|sp|O31755|SYP_BACSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2634029|emb|CAB13530.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484212|dbj|BAI85287.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320021698|gb|ADV96684.1| prolyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 564

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIQNIQQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKIDAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y KM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASAESLDETYQKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R G+   P+ A+SG +GG  +HEF+ L+  GE  +  S +
Sbjct: 181 YSNIFARCGINVRPVIADSGAMGGKDTHEFMALSAIGEDTIAYSDE 226



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 102/163 (62%), Gaps = 1/163 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD KG+
Sbjct: 403 AEGIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGIGVSRTLSAIAEQHHDEKGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+ + ++ +   +   R+  EK+YA L   G +V +DD  E+ G +FA +DL+
Sbjct: 463 IWPKSVAPYDLHILALNMKNDGQRELAEKLYADLKAEGYEVLYDDRAERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G P+++ VG K   +  VE+K R TG   ++S++E+  + S +
Sbjct: 523 GLPIRITVG-KRADEGIVEVKIRQTGESTEISVDELSAFISKQ 564


>gi|150388509|ref|YP_001318558.1| prolyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|166980095|sp|A6TL31|SYP_ALKMQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149948371|gb|ABR46899.1| prolyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 570

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 157/238 (65%), Gaps = 3/238 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E P +AE+ SH+L+LR GMI +   G+YS+LPLG + L  V  I+REE
Sbjct: 1   MRMSKLYMPTLREVPSEAELPSHQLLLRAGMIRKLVAGVYSYLPLGYRTLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E  +  LQ  +LW  +GR+ + G EM+RL DR+++    GPTHEEV+TD+ ++
Sbjct: 61  MDRAGAQEALMSALQPKELWEATGRWQAIGPEMMRLKDRHNREFCLGPTHEEVITDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPRFG+MRSREF+MKDAYSFD   EG K SY  M+  
Sbjct: 121 ELKSYKQLPLNLYQIQTKYRDEKRPRFGLMRSREFIMKDAYSFDKDEEGMKKSYEDMWKG 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENT 237
           Y R+F R  LK   +  ++G +G   SHEF+ ++  GE+ V +C  D  D+    E  
Sbjct: 181 YERVFDRCELKYKVVEGDAGAMGDSESHEFMAMSQYGESLVAYC--DHCDYAATDEKA 236



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG+IF    KYS  ++ATF   +GK+ Y  MGSYGIG  R +AAVIE  HD KGI 
Sbjct: 406 RGIEVGNIFQLDMKYSKGLNATFLDENGKEQYFYMGSYGIGIGRTMAAVIEQYHDEKGIK 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++AP+++ +  +  +    R+  EKIY++L   G +V  DD  E  G +F  A+L+G
Sbjct: 466 WPLALAPYQVVVTIVNPNKDEQRELGEKIYSKLLSKGVEVLLDDRKESPGVKFKDAELIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P++V+ G K   ++ VE   R T  ++++  +EV+
Sbjct: 526 IPIRVVAG-KNAGENIVEFALRATDEKKEVEADEVV 560


>gi|84366334|dbj|BAE67492.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 583

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 150/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 20  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 80  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 140 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 200 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 237



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 421 ARGIEVGHVFQLGSQYAQALQATVIDEGGKVAVMKMGCYGIGISRIVAAAIEQNHDDAGI 480

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +   L   G D   DD G + G+ FA  +
Sbjct: 481 IWPAPMAPWQVVVCVINPKQDAQVV-SAAQALLDELIAAGLDAALDDRGLRPGAMFADME 539

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LLG P +V+V  + ++    E + R     E++
Sbjct: 540 LLGIPHRVVVSERGLAAGTFEYRARTAAAAENL 572


>gi|89075398|ref|ZP_01161815.1| prolyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89048814|gb|EAR54384.1| prolyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 571

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 150/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEIISHQLMLRAGMIRKLASGLYAWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHARPFVLSPTAEEVFTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+     A+GK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNAYSEKMNCGVLDANGKNAILEMGCYGIGVSRVVASAIEQNHDENGII 466

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF +S++ +  A  +  ++A EK+YA L+  G +V +DD  E+ G  FA  +LL
Sbjct: 467 WPDALAPFHVSIVPMNMAKSEEVKEAAEKLYADLTAAGIEVLFDDRKERPGVMFADHELL 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G++ + + ++E K+R TGI+E +++ +V+ +   + +
Sbjct: 527 GIPHTIVIGNRSLENGEMEYKNRRTGIKEAVAVNDVVTFLKQKMA 571


>gi|319941771|ref|ZP_08016093.1| prolyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804704|gb|EFW01571.1| prolyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 582

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 171/258 (66%), Gaps = 7/258 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR   +F+  L+E P DA++ S + M+R+GMI + + G+Y+++PLG + +  +  IIR+E
Sbjct: 1   MRARSFFISTLKEAPADADVISQQYMIRSGMIKKLAAGVYTYMPLGLRVIRKIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+IE+ +P +Q A+LW E+GR++ YG E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MVRAGSIELLMPMVQPAELWQETGRWEKYGPELLRIKDRHMRDFVLQPTSEEVITDVARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  F+ IQ KFRDE RPRFGVMR REF MKDAYSFD    G+  SY+KM+ +
Sbjct: 121 EIKSWRQLPVNFFHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAGAGLSYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    +RA++G IGG  SHEF V+A+ GE  +    D  D+   + N +  
Sbjct: 181 YQRIFTRIGLVFRAVRADTGSIGGSRSHEFQVIANAGEDVIAYCPD-SDY---AANIELA 236

Query: 241 DIISLNSIVEQWTAPYAA 258
           D    +S+++   AP AA
Sbjct: 237 DA---SSVLDGRKAPTAA 251



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 96/170 (56%), Gaps = 3/170 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K V    RGIEVGH+F+ GT+YS PM ATF   +G+   +
Sbjct: 388 PEPVVMDLRNVVEGDKSPDGKGVLRLQRGIEVGHVFFLGTRYSEPMHATFLDENGQPKPM 447

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  RV  A IE  HD KGI WPD++APF++ +  +  A  +  R A + +Y  
Sbjct: 448 QMGCYGIGVTRVAGAAIEQRHDDKGIQWPDAIAPFEVVICPMNYAKSEDVRKAADALYED 507

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L   G DV  DD   + G  FA  +L+G P +V++G + + + ++E   R
Sbjct: 508 LKARGVDVILDDRDMRPGVMFAEWELIGVPHRVVIGDRGLKNGEIEYAER 557


>gi|260775255|ref|ZP_05884152.1| prolyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608436|gb|EEX34601.1| prolyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 571

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 151/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 113/186 (60%), Gaps = 3/186 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P  K   A  RGIEVGHIF  G  YS  M+    G DGK+  ++MG YG
Sbjct: 386 DLRNVVEGDPSPCGKGTIALKRGIEVGHIFQLGNVYSQAMNCGVLGPDGKNVILEMGCYG 445

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGC 377
           IG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H  +  ++A EK+YA L+ +G 
Sbjct: 446 IGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGI 505

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R TG +  +++ +++ +
Sbjct: 506 EVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFEYKNRRTGDKTPVAMADIVEH 565

Query: 438 ASHRFS 443
              + +
Sbjct: 566 IKAQLA 571


>gi|218710332|ref|YP_002417953.1| prolyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|254782926|sp|B7VIT2|SYP_VIBSL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218323351|emb|CAV19528.1| prolyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 571

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 151/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSSE 226



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 104/165 (63%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK   ++MG YGIG  RVVA+ IE +HD  GI 
Sbjct: 407 RGIEVGHIFQLGNTYSKAMNCNVLGPDGKSVILEMGCYGIGVSRVVASAIEQNHDKFGIT 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELV 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R TG +E ++++ VI +   + +
Sbjct: 527 GIPHTIVIGDRSMDEGNFEYKNRRTGDKEAIAMDTVIEHLKAQLA 571


>gi|163803792|ref|ZP_02197646.1| prolyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159172411|gb|EDP57283.1| prolyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 571

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 150/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNVYSQAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGVEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +++G + + +   E K+R +G +  +++ +++ +   + 
Sbjct: 527 GIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMTDIVEHVKAQL 570


>gi|156975521|ref|YP_001446428.1| prolyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166980171|sp|A7N1W0|SYP_VIBHB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156527115|gb|ABU72201.1| hypothetical protein VIBHAR_03253 [Vibrio harveyi ATCC BAA-1116]
          Length = 571

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 150/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNVYSEAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +++G + + +   E K+R +G +  +++ +++ +   + 
Sbjct: 527 GIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMADIVEHVKAQL 570


>gi|153835582|ref|ZP_01988249.1| prolyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148867822|gb|EDL67058.1| prolyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 571

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 150/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNVYSQAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +++G + + +   E K+R +G +  +++ +++ +   + 
Sbjct: 527 GIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMADIVEHVKAQL 570


>gi|58425026|gb|AAW74063.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 595

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 150/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 32  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 91

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 92  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 151

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 152 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 211

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE
Sbjct: 212 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGE 249



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI
Sbjct: 433 ARGIEVGHVFQLGSQYAQALQATVIDEGGKVAVMKMGCYGIGISRIVAAAIEQNHDDAGI 492

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +AP++  + +IN K   QV   A + +   L   G D   DD G + G+ FA  +
Sbjct: 493 IWPAPMAPWQVVVCVINPKQDAQVV-SAAQALLDELIAAGLDAALDDRGLRPGAMFADME 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LLG P +V+V  + ++    E + R     E++
Sbjct: 552 LLGIPHRVVVSERGLAAGTFEYRARTAAAAENL 584


>gi|269960577|ref|ZP_06174949.1| prolyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269834654|gb|EEZ88741.1| prolyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 571

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 150/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNVYSEAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +++G + + +   E K+R +G +  +++ +++ +   + 
Sbjct: 527 GIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMADIVEHVKAQL 570


>gi|222099131|ref|YP_002533699.1| Prolyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|254782923|sp|B9KBD7|SYP_THENN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221571521|gb|ACM22333.1| Prolyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 577

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 156/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  + + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKQLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW  SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKRSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELRSYRQLPLVVYQVANKYRDEIRPRFGLLRAREFIMKDAYSFHSSWESLDETYELFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y RI  RLG+K + + AE+G IGG+ SHEF+V A  GET V +C K
Sbjct: 181 YSRIMERLGVKYMVIEAETGAIGGNASHEFVVPAKIGETNVLYCEK 226



 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +GIE+GHIF  GTKYS  M A F   +G+     MG YG G  R +AAV+E  HD  G
Sbjct: 400 ATKGIELGHIFKLGTKYSEAMEAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENG 459

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +IWP S+AP+ + +  +  +D   +   E+IY  L + G +V  DD     G +F  ADL
Sbjct: 460 MIWPLSIAPYTVIVDILNMNDPDQKRVGEEIYRALLEKGEEVVLDDREVSPGFKFKDADL 519

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +GFP+++ VG + + D  +E+K R +
Sbjct: 520 IGFPIRINVG-RSLKDGVIELKKRYS 544


>gi|254508639|ref|ZP_05120754.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219548396|gb|EED25406.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 571

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 150/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNTYSEAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R +G +  +++ +++ +   + +
Sbjct: 527 GIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMADIVEHVKAQLA 571


>gi|56963999|ref|YP_175730.1| prolyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|81822102|sp|Q5WFT6|SYP_BACSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56910242|dbj|BAD64769.1| proline-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 566

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/275 (44%), Positives = 175/275 (63%), Gaps = 6/275 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S Y  P +++ P DAE  SH+LMLR GM+ Q + G+Y++LPL ++ +  + AIIREE
Sbjct: 1   MRQSTYLAPTMRDVPADAEAISHQLMLRAGMMRQIAAGVYAYLPLAKRTIAKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++P+L  A+LW  SGR+++ G E++RL DR+++    GPTHEEV+T + + 
Sbjct: 61  LDAIGAQELTLPSLHPAELWQASGRWEAMGDELVRLKDRHNRDFALGPTHEEVITSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE RPRFG++R REF+MKDAYSF  +PE    +Y +M  +
Sbjct: 121 GIASYKKLPLCVYQVQTKFRDERRPRFGLLRGREFIMKDAYSFHDSPESLDEAYWQMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y RIF R+GL+  P+ A+SG +GG  +HEF+ LA  GE  V  S D  D+    E     
Sbjct: 181 YSRIFTRVGLEFRPVIADSGAMGGKDTHEFMALASVGEDTVVYS-DGSDYAANLEMAKAA 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKL-FDS 270
                 +  + ++E+   P A T D   E L FD+
Sbjct: 240 LPEAPSVQAHGLLEKRATPEAKTVDEAAEALGFDA 274



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 7/184 (3%)

Query: 258 ATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D+   +  D  P+ K     A GIE+G IF  GT+YS  + A +    GK     MG
Sbjct: 379 AYKDLRTVREGDPSPDGKGTLRFAEGIEIGQIFKLGTRYSESLDAKYLDGQGKAQPFLMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLS 373
            YGIG  R +AAVIE  HD  GI+WP +VAPF + L  +N+K  DQ  +   E++Y+ + 
Sbjct: 439 CYGIGVSRTLAAVIEQHHDEAGIVWPKAVAPFDVHLLALNVKNEDQ--KTLAEQLYSDIR 496

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G DV +DD  E+ G +F  ADL+G P++V VG K   +  +E+K R TG + +++  E
Sbjct: 497 QAGIDVLYDDRPERAGVKFKDADLIGLPVRVAVG-KRAGEGIIEVKVRKTGEQLELTASE 555

Query: 434 VINY 437
           ++ +
Sbjct: 556 LVRW 559


>gi|22298319|ref|NP_681566.1| prolyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|81844949|sp|Q8DKT0|SYP_THEEB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22294498|dbj|BAC08328.1| proline-tRNA ligase [Thermosynechococcus elongatus BP-1]
          Length = 602

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/279 (45%), Positives = 169/279 (60%), Gaps = 19/279 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L++ P +AEI SHKL+LR G I + + GIYS+LPL  + L  V+AI+REE
Sbjct: 1   MRLSQMLFVTLRDEPAEAEIPSHKLLLRAGYIRRIASGIYSYLPLMWRVLQKVSAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR+GA+E  +P LQ A+LW ESGR+D+Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRSGALECLLPQLQPAELWQESGRWDTYTKAEGIMFSLTDRAQRQLGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF       K +Y  M
Sbjct: 121 AKDLIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHADVASLKETYQVM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD---------FM 228
           + +Y RI  R GL    + A+SG IGG  SHEF+VLA  GE +V  + D          +
Sbjct: 181 YDTYSRILQRCGLTFRAVEADSGAIGGSGSHEFMVLAAAGEDEVLYTADGQYAANVEKAV 240

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             P  +  T +  + +L++       P AAT D   E+L
Sbjct: 241 SLPPDAVPTTYKTVATLDT-------PNAATIDALVEQL 272



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIE+GHIF  GTKYS  M AT+    G++  + MG YGIG  R+  A +E 
Sbjct: 427 PTQHLEAARGIEIGHIFQLGTKYSEAMKATYTNEQGEEVPLVMGCYGIGISRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD +GI+WP ++AP+++ ++     D     A   +Y +L   G +V  DD  E+ G +
Sbjct: 487 HHDAQGIVWPLAIAPYQVIIVVPNIGDAQQMQAATDLYEQLQAAGIEVLLDDRDERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F  ADL+G P +++ G + +++ +VE+  R TG +  + L EV+ Y     +  
Sbjct: 547 FKDADLIGIPYRLVTG-RAIANGEVELIIRATGAKSTLPLTEVVRYLQKEIAQQ 599


>gi|167630335|ref|YP_001680834.1| prolyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|226701294|sp|B0THP0|SYP_HELMI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167593075|gb|ABZ84823.1| prolyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 575

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 160/240 (66%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P L+E P +AE+ SH+L+LR G I + S G+Y +LPLGQ+ L  + AI+REE
Sbjct: 1   MRMSRLFAPTLREIPAEAEVISHQLLLRAGFIRRSSAGVYHYLPLGQRVLQRIMAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q A++W++SGR+  YG E+ RL DR+ +     PTHEE +TD+ ++
Sbjct: 61  MNAAGGQELLMPIIQPAEIWLQSGRWHVYGDELFRLKDRHQRDFCLSPTHEESITDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   Y I  K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 NVSSYRDLPMLLYHITNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLHESYMKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTD 238
           Y+ IF R GL   P+ A+ G IGG   SHEF+VLA++GE + V+C  D  D+   +E  +
Sbjct: 181 YVNIFRRCGLTFRPVEADPGAIGGTGGSHEFMVLAESGEAEIVYC--DACDYAANTEKAE 238



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 96/157 (61%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG +F  GTKYS  ++ TF    G+++ + MG YG+G  R +AA IE +HD  GI
Sbjct: 402 ARGIEVGQVFKLGTKYSKALNCTFLDEKGQENLMVMGCYGVGVSRTMAAAIEQNHDDNGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP ++APF++ ++ +   D    +A E IY  L   G D   DD  E+ G +F  ADL+
Sbjct: 462 VWPMAIAPFQVLVVPVSNKDAAQMEAAEAIYKELIAKGVDTLLDDRPERAGVKFKDADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P+++ VG+K  SD  VE+K R  G +   S E+V+
Sbjct: 522 GIPVRITVGNKLASDGVVEVKLRRGGEQFTASREDVV 558


>gi|225849769|ref|YP_002730003.1| prolyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|254782911|sp|C0QTI8|SYP_PERMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225645347|gb|ACO03533.1| prolyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 563

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 153/224 (68%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P +AE+ SH  ++R G I Q + G+Y +LPLG + L  +  IIR+ 
Sbjct: 1   MRASQYFIPTLKEAPAEAEVPSHIYLIRAGFIRQLAAGLYEYLPLGFRVLKKIEGIIRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P L  A+LW E+GR+D YGKE+ R+ DR  +    GPTHEE +TD+ R 
Sbjct: 61  MDDAGALEVLLPILAPAELWQETGRWDVYGKELFRVEDRKGRFFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP  FYQIQ KFRDE RPR+G++R REF+MKDAYSFD++ E +  SY  M  +
Sbjct: 121 NIRSYKDLPKNFYQIQTKFRDEARPRYGLIRGREFIMKDAYSFDISEEMAVKSYEIMKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y +IF  LGL  + + A+ G IGG  SHEF+V    GE   VFC
Sbjct: 181 YKKIFDELGLDYLMVEADVGAIGGKYSHEFVVKVPNGEAHIVFC 224



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G+EVGHIF  GTKYS  + A F   DG++  + MG YGIG  R++AA +E SHD  GIIW
Sbjct: 404 GLEVGHIFLLGTKYSEALKAYFVDKDGREKPIVMGCYGIGVSRLMAAAVEQSHDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P+++APFK+ ++ +   D   +   E IY +  + G +V +DD     G++F  ADL+G 
Sbjct: 464 PENIAPFKLHILALNIKDDQIKTVAEDIYTKAKEKGIEVLFDDRDISPGAKFKDADLIGI 523

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           P +++VG + V + KVEI+ R  G +E++ + E+ N+
Sbjct: 524 PYRIVVG-RGVKNGKVEIQTRKDGKKEEIDINEIDNF 559


>gi|114777677|ref|ZP_01452637.1| prolyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114551893|gb|EAU54427.1| prolyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 572

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 146/218 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+P L++ P DAE+ SH+L+LR G I + + G+Y +LPL  + L  + AIIREE
Sbjct: 1   MRYSNCFVPTLRDVPADAEVISHQLLLRAGYIRRVTSGVYDYLPLALRVLRRIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P +Q  +LW +SGR   YG E+LR  DR+      GPTHEEV+ D+   
Sbjct: 61  MERAGAQELLMPMVQPTELWEKSGRLAKYGPELLRFEDRHAHQSCLGPTHEEVICDLMSR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E     Y  MF +
Sbjct: 121 ELRSYKQLPLNLYQIQNKFRDEIRPRFGLMRGREFVMKDAYSFHADDESLMAEYRNMFDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+  P+ A++G IGG  SHEF VLAD+GE
Sbjct: 181 YTRIFDRLGLRFRPVEADTGSIGGSDSHEFHVLADSGE 218



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 4/190 (2%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+   +  D  P      A  RGIEVG +F  G +Y+ PM   F+   GK     M
Sbjct: 379 AQLVDLRETRAGDGCPRCGGTIALSRGIEVGQVFALGRRYTEPMEVVFQNQQGKREVATM 438

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R++AAV+E  HD  GI WPD +APF + L+++   D V  +A  +IY +L  
Sbjct: 439 GCYGIGVSRLMAAVVEQCHDDGGIAWPDVLAPFPVILVSMGKSDAVL-EASGEIYKQLQT 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV WD+  E+ G +F  A+L+G PLQ+++G + + +   E   R +  RE +++ +V
Sbjct: 498 AGIDVLWDERNERPGVKFKDAELIGIPLQIVIGDRGLKEGVAEFGRRGSDRRE-VAIADV 556

Query: 435 INYASHRFSN 444
           +  A+   +N
Sbjct: 557 VAMATTELAN 566


>gi|27365189|ref|NP_760717.1| prolyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|81844691|sp|Q8DBH9|SYP_VIBVU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27361336|gb|AAO10244.1| prolyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 571

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 151/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAFSTE 226



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+     ++GK+  ++MG YGIG  RVVAA IE ++D  GII
Sbjct: 407 RGIEVGHIFQLGNVYSEAMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + + +   E K+R +G +  +++ +++ +
Sbjct: 527 GIPHTIVIGDRSMDEGHFEYKNRRSGEKTPVAMADIVEH 565


>gi|37680756|ref|NP_935365.1| prolyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|81859846|sp|Q7MIE5|SYP_VIBVY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|37199505|dbj|BAC95336.1| prolyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 571

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 151/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAFSTE 226



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+     ++GK+  ++MG YGIG  RVVAA IE ++D  GII
Sbjct: 407 RGIEVGHIFQLGNVYSEAMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + + +   E K+R +G +  +++ +++ Y
Sbjct: 527 GIPHTIVIGDRSMDEGHFEYKNRRSGEKTPVAMADIVEY 565


>gi|320155572|ref|YP_004187951.1| prolyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319930884|gb|ADV85748.1| prolyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 571

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 151/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAFSTE 226



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+     ++GK+  ++MG YGIG  RVVAA IE ++D  GII
Sbjct: 407 RGIEVGHIFQLGNVYSEAMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  +++G + + +   E K+R +G +  +++ +++ +
Sbjct: 527 GIPHTIVIGDRSMDEGHFEYKNRRSGEKTPVAMADIVEH 565


>gi|238926724|ref|ZP_04658484.1| proline--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885256|gb|EEQ48894.1| proline--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 570

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHQLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ ++LW ESGR+ +YG EM+R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPSELWEESGRWGAYGAEMIRVKDRHGREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+MKD YSFD    G   SY KM V+
Sbjct: 121 EVRSYKQLPLMLYQIQDKFRDERRPRFGVMRSREFIMKDLYSFDKDIAGMNESYRKMSVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C 
Sbjct: 181 YTNIFTRCGLNFRAVEADSGAIGGGHSEEFTVLAPEGESRIACC 224



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 88/146 (60%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE G IF  GTKYS  M ATF    GK   +QMG YGIG  R +AA IE +HD  GI
Sbjct: 404 GRGIEAGQIFALGTKYSKAMGATFLDEAGKTQPLQMGCYGIGVGRTMAAAIEQNHDEHGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++AP+++ ++ + A  +      E++Y  L   G DV  DD  E+ G +F   DL+
Sbjct: 464 IWPRAIAPYEVVVVAVNAKAEEQLAYAEEVYEELRAAGVDVLLDDRRERAGVKFNDCDLI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G+P+++ +G K + +  +E+K R +G
Sbjct: 524 GYPVRIAIGPKTIENGTIEVKIRKSG 549


>gi|154686074|ref|YP_001421235.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166980099|sp|A7Z4S8|SYP_BACA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154351925|gb|ABS74004.1| ProS [Bacillus amyloliquefaciens FZB42]
          Length = 564

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/271 (43%), Positives = 168/271 (61%), Gaps = 5/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SHKL+LR G I Q++ G+YS++PL  + + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHKLLLRAGFIRQNTSGVYSYMPLAYRVIQNIQKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLEETYQNMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S    D    + NT+  
Sbjct: 181 YSSIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYS----DGSSYAANTEMA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +++ +NS     T       D  N K  + L
Sbjct: 237 EVV-MNSEPSDETPEALEKIDTPNVKSIEEL 266



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD KG+
Sbjct: 403 AEGIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGIGVSRTLSAIAEQHHDEKGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+ + ++ +   ++  ++  E++Y +    G +V +DD  E+ G +FA +DL+
Sbjct: 463 IWPKSVAPYDLHILALNMKNEAQKELAEQLYGKFQAEGYEVLYDDRAERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P+++ VG K   +  VE+K R TG   ++S++E+  +
Sbjct: 523 GLPIRITVG-KRADEGIVEVKIRKTGESAEVSVDELSEF 560


>gi|220906778|ref|YP_002482089.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|254782895|sp|B8HNJ7|SYP_CYAP4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219863389|gb|ACL43728.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 613

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/229 (51%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+R+E
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLGKVSQIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P +Q A+LW ESGR+D+Y K    M  L DR D+ +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQIQPAELWQESGRWDTYTKAEGIMFALTDRQDRQLGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I++YR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   E  + +Y KM
Sbjct: 121 ARDLIRTYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDADVESLRVAYGKM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GLK   + A+SG IGG  S EF+VLAD GE +V  ++D
Sbjct: 181 HQAYCNILQRCGLKYRAVDADSGAIGGSGSQEFMVLADAGEDEVLYTED 229



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 98/164 (59%), Gaps = 1/164 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           PE    +ARGIE+GHIF  GTKYS  M AT+    G++  + MG YGIG  R+  A +E 
Sbjct: 438 PEQTLKTARGIEIGHIFQLGTKYSQAMGATYTNEQGEEVPLVMGCYGIGVSRLAQAAVEQ 497

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP++  ++    ++    +A  ++Y  L+  G +   DD  E+ G +
Sbjct: 498 SYDKDGIIWPVAIAPYQAIVVIPNLNETTQVEAATQLYQDLNAAGIETLLDDRNERAGVK 557

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           F  ADL+G P +++ G + ++  KVE+  R +    +++L++VI
Sbjct: 558 FKDADLIGIPYRIVTG-RSLAQGKVEVVQRASRSSTEIALDQVI 600


>gi|183221968|ref|YP_001839964.1| prolyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912036|ref|YP_001963591.1| prolyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226701304|sp|B0SDM9|SYP_LEPBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701305|sp|B0SM58|SYP_LEPBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167776712|gb|ABZ95013.1| Prolyl-tRNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780390|gb|ABZ98688.1| Prolyl-tRNA synthetase (Proline--tRNA ligase; ProRS) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 586

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/224 (48%), Positives = 152/224 (67%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S Y +P  +E+P+DA +ASHKLM+R G+I + + G+YS+LPLG + L  +  I+R+E
Sbjct: 1   MKASSYLIPTAKEDPQDAVVASHKLMMRAGLIRKSAAGLYSYLPLGLRVLRKIEGIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G +E  +P L  +++W ESGR+D  GKEM RL DR+D     GPTHEE    + + 
Sbjct: 61  MDKAGGLEFQLPILTPSEIWKESGRWDKMGKEMFRLKDRHDNESCLGPTHEESFCVLVKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQI  KFRDE+RPRFGV+RSREF MKDAYSF L  E    +Y  M  +
Sbjct: 121 MVRSYKDLPINVYQIHTKFRDEIRPRFGVIRSREFTMKDAYSFHLDDESLDKTYQTMRKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFC 223
           Y RIF  +GL +IP++A+SG +GG  S EF+V++  G ET   C
Sbjct: 181 YRRIFAGMGLTTIPVQADSGNMGGSASEEFMVVSPIGEETLTIC 224



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 5/164 (3%)

Query: 261 DVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K+ D  P       + +GIEVGHIF  G KYS     T     GK     MG YG
Sbjct: 385 DISQAKVGDPCPSCGTGLTAEKGIEVGHIFKLGQKYSKAFDITVLNDKGKATTTTMGCYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGC 377
           IG  R +A VIE  +D KGI WP S+APF + L++I K  D + +   E IY  L + G 
Sbjct: 445 IGVNRCMATVIEQCNDEKGIFWPVSIAPFTVCLVSIAKNPDDIAK--IETIYKSLVESGI 502

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +V WDD     G +F  ++L+GFP+++ +G  F+  +++ I  R
Sbjct: 503 EVLWDDRDLGPGFKFKDSELIGFPIRITLGKGFLEKNEITILDR 546


>gi|323498007|ref|ZP_08103016.1| prolyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323317052|gb|EGA70054.1| prolyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 571

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 151/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGKAYSEAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R +G +  +++ +++ +   + +
Sbjct: 527 GIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMTDIVEHVKAQLT 571


>gi|308173620|ref|YP_003920325.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307606484|emb|CBI42855.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328553448|gb|AEB23940.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328911761|gb|AEB63357.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 564

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 159/243 (65%), Gaps = 4/243 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SHKL+LR G I Q++ G+YS++PL  + + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHKLLLRAGFIRQNTSGVYSYMPLAYRVIQNIQKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLEETYQNMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S    D    + NT+  
Sbjct: 181 YSSIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYS----DGSSYAANTEMA 236

Query: 241 DII 243
           +++
Sbjct: 237 EVV 239



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD KG+
Sbjct: 403 AEGIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGIGVSRTLSAIAEQHHDEKGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+ + ++ +   ++  ++  EK+Y +    G +V +DD  E+ G +FA +DL+
Sbjct: 463 IWPKSVAPYDLHILALNMKNEAQKELAEKLYGKFQAEGYEVLYDDRAERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P+++ VG K   +  VE+K R TG   ++S++E+  +
Sbjct: 523 GLPIRITVG-KRADEGIVEVKIRKTGESAEVSVDELSEF 560


>gi|229544430|ref|ZP_04433488.1| prolyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229324915|gb|EEN90592.1| prolyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 569

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/272 (43%), Positives = 173/272 (63%), Gaps = 16/272 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SH+L+LR G I Q + G+Y++LPL +K L  + AIIREE
Sbjct: 1   MKQSKLFIPTLRDVPAEAEVKSHQLLLRAGYIRQIASGVYTYLPLAKKVLHKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G++E+ +P+LQ A+LW ESGR+ SYG +++RL DR+++    GPTHEEV+T + R+
Sbjct: 61  LEAIGSMELLMPSLQPAELWQESGRWYSYGPDLMRLKDRHERDFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 EVKSYKRLPLSLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHANKESLDETYKDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  L    + A+SG IGG  + EF+VL++ GE  +            S+++D+ 
Sbjct: 181 YTNIFSRCKLDFRAVLADSGAIGGKDTQEFMVLSEIGEDTIAY----------SDSSDYA 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             I +  +   +T P  A      EK  + +P
Sbjct: 231 ANIEMAEVKTVYTKPDEA------EKPLEKIP 256



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 128/264 (48%), Gaps = 35/264 (13%)

Query: 179 VSYLRIFHRLGLKSIPMR-------------AESGPIGGDLSHEFIVLADTGETQV---F 222
           V+ +++ H LG ++I M                 GP+G     +  +LAD     V    
Sbjct: 300 VNEVKVKHLLGSETIEMADPEAIKSIMGADPGSLGPVGA--PEQIRILADHAVRYVVNGI 357

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--AR 280
           C  +  DF   + N + D  + L               D+ N +  D  P+ K     AR
Sbjct: 358 CGANENDFHYVNANPERDYRVDL-------------YGDLRNIQEGDPSPDGKGTIRFAR 404

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M A F   +G++  + MG YGIG  R + AV E  +D KG++W
Sbjct: 405 GIEVGHIFKLGTKYSEAMHAAFLDENGREQVMLMGCYGIGVSRTLTAVCEQHNDDKGLVW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++APF + L+ +   D       E ++A L K    V  DD  E+ G +FA +DL+G 
Sbjct: 465 PVNLAPFDVHLVPVNMKDAQQSALAESLHAELEK-QFTVLMDDRNERPGVKFADSDLIGL 523

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTG 424
           P++V VG K  ++  VE+K R TG
Sbjct: 524 PVRVTVGKK-AAEGIVEVKIRKTG 546


>gi|320593705|gb|EFX06114.1| prolyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 495

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/467 (31%), Positives = 232/467 (49%), Gaps = 51/467 (10%)

Query: 2   RRSKYFLPILQENPRDAEI--ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R +++++P  Q   +DA+    SH  ++R G   Q   G++  LPLG +  D + A++ +
Sbjct: 45  RLTQFWVPPPQVALKDAKQNEESHAKLVRAGFFRQAHSGVFHMLPLGLRVQDKIEALVDK 104

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                GA  +++ ++ SA LW  SGR  S   E+ +  DR     +  PTHEE +T++  
Sbjct: 105 HMRSIGASRVALSSITSAGLWERSGRLGSVKPELFQFEDRKQAKFLLAPTHEEEITELVA 164

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + SYR+LP   YQI  K+RDE+RPR+G++RSREF+MKD Y+FD T E +  +Y ++  
Sbjct: 165 QSVHSYRDLPLRLYQITRKYRDEMRPRYGILRSREFIMKDLYTFDTTVEAALATYEQVRA 224

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y  IF  L +     RA SG +GGDLSHE+ + A  GE  V  S     F   + NT+ 
Sbjct: 225 AYAAIFAELRVPVRVARASSGDMGGDLSHEYHLAASLGEDDV-ASCRACGF---AGNTEI 280

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA----RGIEVGHIFYFGTKYS 295
             I                  D    +  D  P+     +    R IE+GH FY GT+YS
Sbjct: 281 THI----------------GPDSRPARSGDDCPDCGAAGSLQVERAIELGHTFYLGTRYS 324

Query: 296 LPMSATFKGADGKDHYVQ----MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            P++   +G             MG YGIG  R++ AV +   D  G+ WP ++APF++++
Sbjct: 325 EPLNVRVQGDQNTPATSTITPLMGCYGIGISRILGAVADHLADPTGLRWPRAIAPFEVAV 384

Query: 352 INIKAHDQVCRDACEKIYARL---SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVG 407
             + A         E++Y  L   ++   D   DD     +  +   ADL G+P+ VIVG
Sbjct: 385 --VAAGGSPLAQVAERVYDELTANTETRLDALLDDRPAASLPYKLKDADLTGYPVVVIVG 442

Query: 408 SKF------VSDSK---------VEIKHRLTGIREDMSLEEVINYAS 439
           + +       +DS           E++ R  G+R+D+ L E+  + S
Sbjct: 443 AAWRRSTATATDSSAPNISLDGLCEVQCRQLGLRQDVPLSELKTFVS 489


>gi|256827500|ref|YP_003151459.1| prolyl-tRNA synthetase, family II [Cryptobacterium curtum DSM
           15641]
 gi|256583643|gb|ACU94777.1| prolyl-tRNA synthetase, family II [Cryptobacterium curtum DSM
           15641]
          Length = 588

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 160/225 (71%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  ++P L+E P DA+IASH+L+LR GM+ + + G Y++LPLG + +  +  I+REE
Sbjct: 5   IRMSALYVPTLKEVPTDADIASHQLLLRAGMMRKSATGAYTYLPLGWRVIRKIERIVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P +Q A+LW ESGR++ YG E++R+ DR+   +  GPTHEE++T + R+
Sbjct: 65  MDAIGSQEIMMPVIQPAELWHESGRWNDYGPELMRMDDRHGHGLCLGPTHEELITALVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E  + +Y++M  +
Sbjct: 125 ELRSYKQLPVILYQIQSKFRDEIRPRFGLMRSREFIMKDAYSFHASKESLQKTYDEMSAA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
           Y RI  R+GL   P+ A++G IGG ++ E+  LAD GE ++  CS
Sbjct: 185 YARICERVGLVYRPVEADAGQIGGSVTCEYHALADAGEAELASCS 229



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  PE   +    RGIEVG +F  G KYS  M ATF   DG +    MG Y
Sbjct: 381 ADLCTIKAGDVCPECGELVEITRGIEVGQVFQLGDKYSRAMGATFMAEDGSEQPFLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+G  R +AAV+E  +D  GI WP SVAP ++ ++ +   D+    A E +   L+ +G 
Sbjct: 441 GVGVSRTMAAVVEQHNDEYGIKWPLSVAPAQVCILPLAVGDEEVEPAAEALAHELAGMGL 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +V  DD  E+ G +FA ADLLG+PLQ+I+G + +   + E+K+R TG +  ++++E
Sbjct: 501 EVVIDDRKERPGVKFAEADLLGWPLQIIIGKRGLDAGEYELKNRSTGAKRTIAIDE 556


>gi|167517909|ref|XP_001743295.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778394|gb|EDQ92009.1| predicted protein [Monosiga brevicollis MX1]
          Length = 421

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 208/392 (53%), Gaps = 29/392 (7%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L+++ G I Q S G+Y  LPL ++ L  +  ++R E +  GA E+S+ TL   DLW  S
Sbjct: 6   QLLVQAGYIAQSSSGMYHMLPLAKRVLGKLENLVRAEMSAIGAQEISLSTLTGKDLWTHS 65

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR+D+   E+ R+ DR        PTHEE +T + +S+++S RN+P   YQ+  K+RDEL
Sbjct: 66  GRWDTVSSELFRVEDRRGAVYCLAPTHEEAITTLAKSYVRSARNMPLYLYQLDRKYRDEL 125

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR G++R REF MKD Y+FD+  + ++ +Y  +  +Y  +F  L +  + + A++G IG
Sbjct: 126 RPRSGLLRGREFYMKDLYTFDVDEQAARLTYESVVKAYHNLFTHLHVPYVAVEADTGAIG 185

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G +SHEF VLA  GE  V                D    + +    E  T P A T    
Sbjct: 186 GSMSHEFQVLAPVGEDSVTV----------CHTCDRAANLEVMPGSEAGTTPVAPTDHCQ 235

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E            S  GIEVGH F  G KYS     T+    G +    MG YG+G  R
Sbjct: 236 FE------------SHAGIEVGHTFLLGHKYSSMFDVTYDSPSGPE-LAFMGCYGLGTSR 282

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSK-VGCDVF 380
           ++AAV E+     G+ WP S+AP+++++I + A  +D +   A   +  +L++ +  DV 
Sbjct: 283 ILAAVTEALASENGLRWPLSLAPYRVAVITLGASRNDNI-ESAATCLTEQLNEAMPGDVL 341

Query: 381 WDD--MGEQIGSQFAVADLLGFPLQVIVGSKF 410
            DD  +   +  + A   L+G P  V+VGS++
Sbjct: 342 LDDRCVDLSLRQKIATMRLIGVPYVVVVGSRY 373


>gi|292670562|ref|ZP_06603988.1| proline-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647728|gb|EFF65700.1| proline-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 570

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIR E
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEEIIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P LQ ++LW ESGR+ +YG EM+R+ DR+D+    GPTHEE++T + R 
Sbjct: 61  MEAVGGQEIMMPILQPSELWEESGRWGAYGAEMIRIKDRHDREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVLLYQIQDKFRDERRPRFGIMRSREFIMQDLYSFDEDIEGMNESYRKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C 
Sbjct: 181 YSNIFTRCGLDFRVVEADSGAIGGGRSEEFTVLAPEGESRIACC 224



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 8/164 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIE G IF  GTKYS  M ATF  A GK   +QMG YGIG  R +AA IE +HD  GI
Sbjct: 404 SRGIEAGQIFALGTKYSEAMDATFLDAAGKAQPLQMGCYGIGVGRTMAAAIEQNHDDSGI 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++AP+++ ++ + A         E++Y  L   G D   DD  E+ G +F   DL+
Sbjct: 464 IWPRAIAPYEVVVVAVNAKVPEQLAYAEEVYEELRAAGVDALLDDRRERAGVKFNDCDLI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G+P+++ VG K +    +E+K R TG        E++N+A   +
Sbjct: 524 GYPVRIAVGPKTIESGSIEVKLRRTG--------ELVNFARDTY 559


>gi|167627536|ref|YP_001678036.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189083499|sp|B0TXX4|SYP_FRAP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167597537|gb|ABZ87535.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 565

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/230 (46%), Positives = 158/230 (68%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+P+G K L  +  I+REE
Sbjct: 1   MKATQTLIATTKELPKEAVLTSHQYMLKAGLIKKLASGIYTWMPIGLKVLQKIQNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSVLPSELLQETHRWDKFGPELLKLKDRHERDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    E   ++YNKM  +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSECLHNTYNKMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P+RA++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLVYRPVRADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 3/180 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+N        GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDNNGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+++AP++++++ I  +  +  +   +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPETIAPYQVAILPINYNKSESVKQTADKLYQELLVKG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+GF   V++G + +    VE K+R T  ++++ LE++ +
Sbjct: 503 IDVILDDRGARPGVMFADADLIGFSHHVVIGDRLLEQGLVEYKNRKTQEKQEIRLEKLFD 562


>gi|148979813|ref|ZP_01815720.1| prolyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145961607|gb|EDK26907.1| prolyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 572

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y   F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCNAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNVYSQAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDIELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R  G +E ++++ ++ + + +F+
Sbjct: 527 GIPHTIVIGDRSMKEGNFEYKNRRAGTKEAVAIDSIVEHVTSQFA 571


>gi|28899107|ref|NP_798712.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364768|ref|ZP_05777355.1| proline--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260876810|ref|ZP_05889165.1| proline--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260895895|ref|ZP_05904391.1| proline--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|81839761|sp|Q87MC3|SYP_VIBPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28807331|dbj|BAC60596.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089375|gb|EFO39070.1| proline--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308091476|gb|EFO41171.1| proline--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308115298|gb|EFO52838.1| proline--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|328474355|gb|EGF45160.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 571

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLAD+GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLADSGEDLIAFSTE 226



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 106/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+ +  G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNVYSEAMNCSVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDIELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +++G + + +   E K+R TG +  +++ +++ +   + 
Sbjct: 527 GIPHTIVIGDRSMDEGNFEYKNRRTGEKTPVAMADIVEHVKSQL 570


>gi|153836755|ref|ZP_01989422.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260900371|ref|ZP_05908766.1| proline--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|149749901|gb|EDM60646.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308108556|gb|EFO46096.1| proline--tRNA ligase [Vibrio parahaemolyticus AQ4037]
          Length = 571

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLAD+GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLADSGEDLIAFSTE 226



 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+ +  G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNVYSEAMNCSVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++  EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSERVKEEAEKLYAELTAMGIEVLFDDRKERPGVMFSDIELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +++G + + +   E K+R TG +  +++ +++ +   + 
Sbjct: 527 GIPHTIVIGDRSMDEGNFEYKNRRTGEKTPVAMADIVEHVKSQL 570


>gi|261253697|ref|ZP_05946270.1| prolyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937088|gb|EEX93077.1| prolyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 571

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKSGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 105/165 (63%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNTYSQAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R  G +  +++ +++ +   + +
Sbjct: 527 GIPHTIVIGDRSMKEGNFEYKNRRNGEKTAVAMADIVEHIKAQLA 571


>gi|237752688|ref|ZP_04583168.1| prolyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376177|gb|EEO26268.1| prolyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 582

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 158/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P  +E P+D  + SH+ ++R G I Q   GIY++LPLG++ LD + +I++EE
Sbjct: 1   MRFSKIFIPTFKEAPKDVVLKSHEYLIRGGFIQQIGSGIYNFLPLGKRVLDKIKSIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++  +  A+LW +SGR++ YGKE+LR  DR D A + GPTHEEV+T++ ++
Sbjct: 61  MDNAGANEVTLGFVTPANLWQKSGRFERYGKELLRFNDRKDNAFVLGPTHEEVITELVKA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE+RPRFG+MR+REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 NVKSYKQLPLHLYQINLKFRDEMRPRFGLMRAREFIMKDGYSFHSNFEDLKREFDLMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +IF RLGL    + A+SG IGG  S EF+VLA++GE  + C  D
Sbjct: 181 YSKIFTRLGLDFRAVFADSGAIGGSGSKEFMVLANSGEDTI-CVCD 225



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE GHIF  GTKYS  M ATF    GK     MG YGIG  R+++A+IE  HD KG+I
Sbjct: 414 KGIEAGHIFQLGTKYSSAMDATFLDESGKAQPFIMGCYGIGVSRLLSAIIEQHHDKKGMI 473

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D    +  EKIY  L+K G +   DD  E+ G++ A  +L+G
Sbjct: 474 WTQATAPFDVDIMVSNIKDSAQLEMGEKIYTALNKEGIECLLDDRAERYGAKIADFELIG 533

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           FP  +I+G K +   ++E+  R    RE + + + +
Sbjct: 534 FPFGIIIG-KGLEKGEIELVRRKDLSREVLKVSDFM 568


>gi|91223451|ref|ZP_01258716.1| prolyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|269966231|ref|ZP_06180320.1| prolyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|91191537|gb|EAS77801.1| prolyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|269829146|gb|EEZ83391.1| prolyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 571

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 147/218 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y + F R+GL   P+ A+SG IGG  S EF VLA++GE
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGSGSQEFHVLAESGE 218



 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNAYSAAMNCGVLGPDGKNVILEMGCYGIGITRVVAAAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +I+G + + +   E K+R TG +  +++ +++ +   + 
Sbjct: 527 GVPHTIIIGDRSMKEGNFEYKNRATGEKTAVAMTDIVEHVKAQL 570


>gi|323495331|ref|ZP_08100409.1| prolyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323310402|gb|EGA63588.1| prolyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 571

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSTE 226



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNTYSEAMNCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R +G +  +++ +++ +   + +
Sbjct: 527 GVPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMADIVEHVKAQLA 571


>gi|254421628|ref|ZP_05035346.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196189117|gb|EDX84081.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 597

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 151/219 (68%), Gaps = 3/219 (1%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+E+P +AEI SHKL+LR G + + + G+Y++LPL Q+ LD V+AI+REE N TGA E  
Sbjct: 6   LREDPAEAEIPSHKLLLRAGYMRRIASGLYAYLPLLQRVLDKVSAIVREEMNATGAQECL 65

Query: 71  VPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           +P LQ A LW ESGR+D+Y K    M  L DR D+ +  GPTHEEV+T I R  I+SY+ 
Sbjct: 66  LPQLQPASLWKESGRWDTYTKAEGIMFSLGDRRDQELALGPTHEEVITAIARDMIRSYKQ 125

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y++M+ +Y  I  R
Sbjct: 126 LPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDAESLKATYDQMYRTYSNILRR 185

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            GL    + A+SG IGG  S EF+VLA+ GE +V  ++D
Sbjct: 186 TGLAFRAVEADSGAIGGSGSTEFMVLAEAGEDEVLYTED 224



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIE+GHIF  G KYS  + AT+    GK+  ++MG YG+G  R+  A +E S+D  G
Sbjct: 428 TARGIEIGHIFQLGHKYSEALGATYTSEQGKEVPLEMGCYGVGVSRLAQAAVEQSYDKNG 487

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+   ++  NI   DQ+   A +++Y  L+  G +   DD  E+ G +F  A
Sbjct: 488 IIWPVAIAPYHAIVVVPNIGDDDQMA--AAKQLYDDLNSAGVETLLDDRKERAGVKFKDA 545

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +L+G P +V+ G + +   KVE+  R  G  E+++L+E ++
Sbjct: 546 ELVGIPFRVVTG-RSLKQGKVEVAKRANGEVEEIALDEAVH 585


>gi|315302972|ref|ZP_07873693.1| prolyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628661|gb|EFR97073.1| prolyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 538

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AIIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR+  YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWSDYGPELMRLKDRAARDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL+   + A+SG IGG  + EF+ L++ GE  +  S
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGKETKEFMALSEIGEDTIAYS 224



 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 4/133 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G+
Sbjct: 403 AEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGL 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L + G  V  DD GE+ G +FA AD
Sbjct: 463 VWDKKISPFDLHLIPVNMKSEEQVA--FAETLYVSLQQAGYSVLIDDRGERAGVKFADAD 520

Query: 397 LLGFPLQVIVGSK 409
           L+G PL++ VG K
Sbjct: 521 LIGLPLRITVGKK 533


>gi|241668104|ref|ZP_04755682.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876639|ref|ZP_05249349.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842660|gb|EET21074.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 565

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 106/230 (46%), Positives = 158/230 (68%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+P+G K L  +  I+REE
Sbjct: 1   MKATQTLIATTKELPKEAVLTSHQYMLKAGLIKKLASGIYTWMPIGLKVLQKIQNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSVLPSELLQETHRWDKFGPELLKLKDRHERDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +   ++YNKM  +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLHNTYNKMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P+RA++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLVYRPVRADTGAIGGDNSHEFQVLANAGE-DIICYSNSSDY 229



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 105/180 (58%), Gaps = 3/180 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+N        GIEVGHIF     YS PM+A     DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDNNGTLELTNGIEVGHIFELEDVYSKPMNANIISQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+++AP++++++ I  +  +  +   +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPEAIAPYQVAILPINYNKSESVKQTADKLYQELLAKG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  +++++LE++++
Sbjct: 503 IDVILDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITLEKLLD 562


>gi|304440717|ref|ZP_07400601.1| proline--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370904|gb|EFM24526.1| proline--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 582

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 161/257 (62%), Gaps = 15/257 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K ++P L+E P DAE+ SHKL+LR  MI + + GIYS+LPLG + +  +  I+REE
Sbjct: 1   MRLTKLYMPTLREVPTDAEVESHKLLLRAAMIRRSTTGIYSYLPLGYRVVRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q A++W ESGR+D +G EM +L DRN +    GPT EE  T + + 
Sbjct: 61  MDRAGSQEILMSAIQPAEIWEESGRWDKFGPEMFKLVDRNGRDFCLGPTAEEYFTTLVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG+ R+REFLMKDAYSFD   EG + SY+  + +
Sbjct: 121 EVSSYKQLPLNIYQIQTKYRDEKRPRFGINRAREFLMKDAYSFDKDEEGLQKSYDMYYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--------------- 225
           Y  +F RL L    +  ++G +GG +SHEFI L++TGE  +F S+               
Sbjct: 181 YQNVFDRLSLDYKIVEGDNGAMGGHMSHEFIALSETGEGIIFYSENSDKAYTEEKAPVHY 240

Query: 226 DFMDFPIPSENTDFDDI 242
           DF+D   P E  + + I
Sbjct: 241 DFVDTSEPLEKEEVETI 257



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 7/172 (4%)

Query: 269 DSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D +P    V  + RGIEVG+IF  GTKYS  + ATF   +GK  Y  MGSYGIG  R V+
Sbjct: 391 DKIPGTDEVYKTRRGIEVGNIFQLGTKYSEALDATFLDENGKSQYFVMGSYGIGVTRSVS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           AV+E  HD  GI+WP ++AP++  I+++N K  +Q+  +  EK++A L  +G +V  DD 
Sbjct: 451 AVVEQYHDDHGIVWPMAIAPYQIIITVMNPKKEEQL--ELGEKLHAALVNMGYEVLLDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               G +F   DL+G PL++ VG K   DS VE   R      +M+ +E I+
Sbjct: 509 NVGAGVKFNDRDLIGIPLRITVGKK-AQDSIVEFSRRDNRENIEMTSKEAID 559


>gi|304436529|ref|ZP_07396502.1| proline--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370472|gb|EFM24124.1| proline--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 569

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHQLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ ++LW ESGR+ +YG EM+ + DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPSELWEESGRWGAYGAEMICVKDRHGREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+MKD YSFD    G   SY KM V+
Sbjct: 121 EVRSYKQLPLMLYQIQDKFRDERRPRFGVMRSREFIMKDLYSFDKDIAGMNESYRKMAVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C 
Sbjct: 181 YTNIFTRCGLNFRAVEADSGAIGGGHSEEFTVLAPEGESRIACC 224



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 88/146 (60%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE G IF  GTKYS  M ATF    GK   +QMG YGIG  R +AA IE +HD  GI
Sbjct: 403 GRGIEAGQIFALGTKYSEAMGATFLDESGKTQPLQMGCYGIGVGRTMAAAIEQNHDAHGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++AP+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+
Sbjct: 463 IWPRAIAPYEVVVVAVNAKVEEQLAYAEEIYEELRAAGVDVLLDDRRERAGVKFNDCDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G+P+++ +G K + +  +E+K R +G
Sbjct: 523 GYPVRIAIGPKTIENGTIEVKIRQSG 548


>gi|208779640|ref|ZP_03246985.1| prolyl-tRNA synthetase [Francisella novicida FTG]
 gi|208744601|gb|EDZ90900.1| prolyl-tRNA synthetase [Francisella novicida FTG]
          Length = 565

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLNDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D+V ++  +K+Y  L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKV-KEVADKLYQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQELIEYKNRKTQEKQEITIAELI 561


>gi|254229498|ref|ZP_04922912.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262393498|ref|YP_003285352.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151937963|gb|EDN56807.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262337092|gb|ACY50887.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 571

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 147/218 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y + F R+GL   P+ A+SG IGG  S EF VLA++GE
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGSGSQEFHVLAESGE 218



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 407 RGIEVGHIFQLGNAYSAAMNCGVLGPDGKNVILEMGCYGIGITRVVAAAIEQNHDKYGII 466

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+
Sbjct: 467 WPDAIAPFQVAIVPMNMHKSEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  +I+G + + +   E K+R TG +  +++ ++I +   + 
Sbjct: 527 GVPHTIIIGDRSMKEGNFEYKNRATGEKTPVAMTDIIEHVKAQL 570


>gi|56708459|ref|YP_170355.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670930|ref|YP_667487.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457616|ref|ZP_03666089.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371083|ref|ZP_04987085.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875304|ref|ZP_05248014.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81820763|sp|Q5NF37|SYP_FRATT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123359400|sp|Q14GJ0|SYP_FRAT1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56604951|emb|CAG46045.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321263|emb|CAL09428.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569323|gb|EDN34977.1| hypothetical protein FTBG_00840 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841303|gb|EET19739.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159660|gb|ADA79051.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 565

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D++ ++  +K+Y  L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKI-KEVADKLYQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELI 561


>gi|225849003|ref|YP_002729167.1| prolyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644474|gb|ACN99524.1| prolyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 563

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 151/225 (67%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+YF+P L+ENP +A++ SH  ++R G I   + GIY +LPLG + L  +  IIR+ 
Sbjct: 1   MLASRYFMPTLKENPSEAQVPSHIYLIRGGFIRSLAAGIYEYLPLGFRVLKKIENIIRKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P L  A+LW E+GR+D YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDEAGALELLLPILTPAELWKETGRWDVYGKELFRLKDRKDADFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YSFD++ E +  +Y  M  +
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYSFDVSEEDAIKTYEVMKET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
           Y +IF  L L  + + A+ G IGG  SHEF+V   +GE   V+C 
Sbjct: 181 YHKIFQDLKLDYLMVEADVGAIGGKFSHEFVVKVPSGEAHIVYCE 225



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 23/227 (10%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI---ISLNSIVEQWTAPY 256
           GP+G DL     + AD      +  K+  +F + +   D+  I   +  +  VE++    
Sbjct: 332 GPMGLDLP----IYAD------YSIKELYNFVVGANEKDYHYINVNLGRDVKVEEFY--- 378

Query: 257 AATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+   K  D  P  +N      G+EVGHIF  GTKYS  M A F   DGK+  + M
Sbjct: 379 ----DLATAKEGDPCPVCKNPLKETTGLEVGHIFLLGTKYSQAMKAYFTDKDGKEKPIIM 434

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R+++A++E  HD KGIIWPD VAPF + ++ +   D+    A  +IY +  +
Sbjct: 435 GCYGIGVSRLISAIVEQYHDDKGIIWPDVVAPFDLHILVLNVKDEKSLKAGFEIYEKAKR 494

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G DV  D+     GS+F  ADL+G P ++++G K +++ KVE + R
Sbjct: 495 QGLDVLLDERDISPGSKFKDADLIGIPNRIVIG-KSLNEGKVEYQRR 540


>gi|254368866|ref|ZP_04984879.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121787|gb|EDO65957.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 565

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 103/179 (57%), Gaps = 3/179 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I  +     ++  +K+   L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSAKVKEVADKLCQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELI 561


>gi|57234857|ref|YP_181114.1| prolyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|114152187|sp|Q3Z9I5|SYP_DEHE1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57225305|gb|AAW40362.1| prolyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 569

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 158/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKSGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDESYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE   ++C K
Sbjct: 181 YENVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPK 226



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 89/159 (55%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R++AA IE +HD K
Sbjct: 398 ASKRGVEVGHIFKLGTFLSERFGANFTDAEGISHPIIMGCYGMGVGRLLAAAIEQNHDEK 457

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP  +AP++I +  +   +     A EKIY  L   G +V +DD     G +F  AD
Sbjct: 458 GIIWPMPIAPYQIYICGLFLDNPAVSQAAEKIYTELEAQGVEVLFDDRELTAGVKFNDAD 517

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG PL++ +  + +    VE+K R     E + LE ++
Sbjct: 518 LLGIPLRLTISPRNLDKGGVELKLRRNKESELVPLESIM 556


>gi|89256041|ref|YP_513403.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314517|ref|YP_763240.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502051|ref|YP_001428116.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010208|ref|ZP_02275139.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|290953930|ref|ZP_06558551.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312679|ref|ZP_06803424.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|114152197|sp|Q2A4E9|SYP_FRATH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122325457|sp|Q0BMT1|SYP_FRATO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980124|sp|A7NB07|SYP_FRATF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89143872|emb|CAJ79090.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129416|gb|ABI82603.1| proline--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156252654|gb|ABU61160.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 565

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 105/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D+V ++  +K+   L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKV-KEVADKLCQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELI 561


>gi|187931393|ref|YP_001891377.1| prolyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|226701291|sp|B2SFQ6|SYP_FRATM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187712302|gb|ACD30599.1| prolyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 565

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDCKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D+V ++  +K+Y  L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKV-KEVADKLYQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G K +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDKLLEQGLIEYKNRKTQEKQEITIAELI 561


>gi|270307741|ref|YP_003329799.1| prolyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153633|gb|ACZ61471.1| prolyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 569

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKSGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDESYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE + ++C K
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPK 226



 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 89/159 (55%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R++AA IE +HD K
Sbjct: 398 ASKRGVEVGHIFKLGTFLSERFGANFTDAEGISHPIIMGCYGMGVGRLLAAAIEQNHDEK 457

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP  +AP+++ +  +         A EK+YA L   G +V +DD     G +F  AD
Sbjct: 458 GIIWPMPIAPYQVYICGLFLDKPAVSQAAEKMYAELEAQGVEVLFDDRELTAGVKFNDAD 517

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG PL++ +  + +    VE+K R     E + L+ ++
Sbjct: 518 LLGIPLRLTISPRNLDKGGVELKLRRNKEAELVPLDNIV 556


>gi|134301543|ref|YP_001121511.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166980125|sp|A4IWT9|SYP_FRATW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134049320|gb|ABO46391.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 565

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D++ ++  +K+Y  L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKI-KEVADKLYQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELI 561


>gi|332678669|gb|AEE87798.1| Prolyl-tRNA synthetase Bacterial type [Francisella cf. novicida
           Fx1]
          Length = 565

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D+V ++  +K+Y  L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKV-KEVADKLYQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELI 561


>gi|195016104|ref|XP_001984341.1| GH15069 [Drosophila grimshawi]
 gi|193897823|gb|EDV96689.1| GH15069 [Drosophila grimshawi]
          Length = 461

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 239/467 (51%), Gaps = 48/467 (10%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S  F P L   P++A +        S KL+   G++     G Y  +P+ Q+A+D   
Sbjct: 3   KASSLFWPALV-TPKNAIVKQTEQLSRSQKLLTELGLVKPGCNGTYQIMPIAQRAVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQRNMQEAGGQKISMPVLTPTQLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD+T E ++ +
Sbjct: 122 TAMLATTAPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVTKEAAEKT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y ++  +Y + F +L +  + + A +G +GG LSHE+  ++  GE               
Sbjct: 182 YARISNTYAQFFRQLEVPFVTVEAATGIMGGSLSHEYHYISPVGE--------------- 226

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE---NKRVSARGIEVGHIFYF 290
                 D ++  N+        YA   +V      ++ P    ++ +  RG+EV H F  
Sbjct: 227 ------DTLLKCNN------CGYAGNVEVFGNTSANTCPSCQGSQLIPVRGVEVAHTFLL 274

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS P+ ATF    GK   + MG YGIG  RV+AA +E     + + WP  +AP+ + 
Sbjct: 275 GDKYSKPLGATFLNTSGKPETLVMGCYGIGITRVIAAALEVLSTEQELRWPKLLAPYDVC 334

Query: 351 LINIK--AHDQVCRDACE-KIYARLSKVGC---DVFWDDMGE-QIGSQFAVADLLGFPLQ 403
           LI  K  + +QV  +  E ++  +L+++ C   ++  DD  E  IG +   A  LG PL 
Sbjct: 335 LIGPKQGSKEQVPAEGVEIELLQQLTQI-CGAEELLHDDRKELTIGKRLFDAKRLGHPLT 393

Query: 404 VIVGSKFVSDSKVEIKHRLTGIRE-DMSLEEVINYASHRFSNNRPVL 449
           ++VG+K V   + +++  L+G  + ++ L EV++  +    + + +L
Sbjct: 394 IVVGTKAVQKEEPKLELHLSGAEKLELELPEVLSLVTAHVRHKQQLL 440


>gi|254373305|ref|ZP_04988793.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151571031|gb|EDN36685.1| prolyl-tRNA synthetase [Francisella novicida GA99-3549]
          Length = 565

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGVKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D+V ++  +K+Y  L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKV-KEVADKLYQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELI 561


>gi|254374768|ref|ZP_04990249.1| hypothetical protein FTDG_00943 [Francisella novicida GA99-3548]
 gi|151572487|gb|EDN38141.1| hypothetical protein FTDG_00943 [Francisella novicida GA99-3548]
          Length = 565

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D+V ++  +K+Y  L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKV-KEVADKLYQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELI 561


>gi|147668995|ref|YP_001213813.1| prolyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|189083496|sp|A5FS84|SYP_DEHSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146269943|gb|ABQ16935.1| prolyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 569

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 158/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE + ++C K
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPK 226



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 90/158 (56%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R++AA IE +HD KG
Sbjct: 399 SKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCYGMGVGRLLAAAIEQNHDEKG 458

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP  +AP+++ +  +   + V R++ EKIY  L     +V +DD     G +F  ADL
Sbjct: 459 IIWPMPIAPYQVYICGLFLDNPVVRESAEKIYKELEAKSIEVLFDDRELTAGVKFNDADL 518

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LG PL++ +  + +    VE K R     E + L+ ++
Sbjct: 519 LGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIV 556


>gi|300870022|ref|YP_003784893.1| prolyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687721|gb|ADK30392.1| prolyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 571

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 155/219 (70%), Gaps = 1/219 (0%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E P DA IAS+KLM+R  +  + S G+YS+LPLG + L+ ++ IIREE +  G+ 
Sbjct: 1   MPTLKEAPSDAIIASNKLMIRAALARKISNGLYSYLPLGVRVLNKISNIIREEMDAIGSN 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++ I+SY++
Sbjct: 61  ECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQNEIQSYKD 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +Y +IF R
Sbjct: 121 LPVTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSGAYTKIFKR 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCSK 225
           +GL ++ ++A+SG +GG+ S EF+VL++ G ET +FCSK
Sbjct: 181 MGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSK 219



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 2/175 (1%)

Query: 269 DSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE   K    +G+E+GHIF  G KY+   + T    + K     MG YGIG  R +A
Sbjct: 385 DRCPECGEKLYQKKGLELGHIFKLGDKYTQAFNFTVLDENNKAITPIMGCYGIGVNRALA 444

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +VIE ++D KGII+P SVAP++  ++ I    +      E+IY  LS +G +  +DD  E
Sbjct: 445 SVIEQNYDDKGIIFPISVAPYEAIVVAIDKETEESFKKAEEIYKALSAIGVETMFDDRKE 504

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++G +    DL+G P+++IVG K +    VE K R      ++ LE+++ Y   +
Sbjct: 505 RLGVKLNDCDLIGVPMRIIVGKKSLERGVVEFKLRRDLESVEVKLEDIVEYVKAK 559


>gi|118497952|ref|YP_899002.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323174|ref|ZP_03056958.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
 gi|152112922|sp|A0Q7N3|SYP_FRATN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118423858|gb|ABK90248.1| prolyl-tRNA synthetase [Francisella novicida U112]
 gi|194322538|gb|EDX20018.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 565

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D+V ++  +K+Y  L   
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKV-KEVADKLYQDLLGD 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITITELI 561


>gi|163781697|ref|ZP_02176697.1| prolyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882917|gb|EDP76421.1| prolyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 570

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 152/225 (67%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL  L+E+P +AE  SH+L+L+ G I Q S GIY  LP G + +  + +I+R+E
Sbjct: 1   MRWSRYFLYTLKEDPAEAEAPSHRLLLKAGFIKQVSAGIYEILPAGWRVIRKIESIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L  A+LW E+GR+D+YG E+ RL DR+ +    GPTHEE +TD+ R 
Sbjct: 61  MDRSGAQELLLTVLNPAELWKETGRWDTYGNELFRLKDRSGREYCLGPTHEEEITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 VVHSYRQLPVTLYQIQVKFRDEKRPRFGLIRGREFIMKDAYSFDADEFSATMSYENMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y R+F +L L+ I  +A +G IGG  SHEFI   D GE +V +C 
Sbjct: 181 YDRVFKKLRLEVIMAQASTGQIGGKQSHEFIAFTDYGEAKVGYCE 225



 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 1/167 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GHIF  GT+YS PM A F   +G +  + MG YGIG  R+++A++E  HD KGI 
Sbjct: 404 RGLELGHIFLLGTRYSEPMKAYFTDPEGNEKPIIMGCYGIGISRIMSAIVEQYHDDKGIK 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAPF++ +I +   D    +  EK+Y    + G +V +DD  E  G +FA ADL+G
Sbjct: 464 WPTPVAPFELEIICLNMSDSQMTEVAEKLYLEAEEKGIEVIYDDREESAGFKFADADLVG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           FP +++VG K V + KVE++ R TG + D+ +EEVI+      + ++
Sbjct: 524 FPYRIVVGRK-VKEGKVELQKRATGEKLDVPVEEVIDRVKEMIAEDK 569


>gi|62261354|gb|AAX77983.1| unknown protein [synthetic construct]
          Length = 600

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 27  MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 86

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 87  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 146

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 147 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 206

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 207 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 255



 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 409 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKV 375
           G G  RV+AA IE SHD  GIIWP+S+AP+++++  IN    D++ ++  +K+Y  L   
Sbjct: 469 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKI-KEVADKLYQDLLGD 527

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 528 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELI 587


>gi|311068179|ref|YP_003973102.1| prolyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310868696|gb|ADP32171.1| prolyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 564

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 151/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADADAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIKNIQTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  LEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLDETYENMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S +
Sbjct: 181 YTNIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYSDE 226



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD KG+
Sbjct: 403 AEGIEVGQVFKLGTRYSEAMNATYLDENGRSQPMLMGCYGIGISRTLSAIAEQHHDEKGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+ + ++ +   +   ++  EK+Y      G DV +DD  E+ G +FA +DL+
Sbjct: 463 IWPKSVAPYDLHILALNMKNDAQKELAEKLYETFKTEGYDVLFDDRAERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P+++ VG K   +  VE+K R TG   ++S+EE+ ++
Sbjct: 523 GLPIRITVG-KRADEGIVEVKIRKTGESSEVSIEELSDF 560


>gi|20071917|gb|AAH27073.1| Pars2 protein [Mus musculus]
          Length = 397

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 206/392 (52%), Gaps = 36/392 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I   S G Y  +P   +A++ +  +I +E    G  ++++P+L  A+LW  + R+D  G
Sbjct: 1   LILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGV 149
           +E+LRL DR+ K    GPTHEE +T +  S  K SY+ LP   YQ+  KFRDE RPRFG+
Sbjct: 61  RELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGL 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R REF MKD Y+FD + E ++ +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHE
Sbjct: 121 LRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHE 180

Query: 210 FIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           F +  D GE + V C          S NT+  D+     I      P   T         
Sbjct: 181 FQLPVDIGEDRLVVCPSCHF-----SANTEILDLS--QKICPDCQGPLTET--------- 224

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      +GIEVGH FY  TKYS   +A F  A G+    +MG YG+G  R++AA 
Sbjct: 225 -----------KGIEVGHTFYLSTKYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAA 273

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIY----ARLSKVGCDVFWD 382
           IE       I WP  +AP+++ +I  K  + +    +  EK+Y      + ++  +V  D
Sbjct: 274 IEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVEKLYDDIMEAVPQLRGEVLLD 333

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D     IG++   A+ LG+P  +I G + + D
Sbjct: 334 DRTHLTIGNRLKDANKLGYPFVIIAGKRALED 365


>gi|19112749|ref|NP_595957.1| mitochondrial proline-tRNA ligase (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74676105|sp|O74765|SYPM_SCHPO RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|3687477|emb|CAA21147.1| mitochondrial proline-tRNA ligase (predicted) [Schizosaccharomyces
           pombe]
          Length = 425

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/421 (33%), Positives = 216/421 (51%), Gaps = 32/421 (7%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           ++++L++  G I     GI+ +LPLG +  + +  ++       GA  +S+  L S ++W
Sbjct: 26  SANQLLIDMGFIQPSMPGIFQYLPLGLRVQNKICDLLHISMRSLGASAISLAHLSSKEIW 85

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            +SGR+   G E+ RL DRND+ M   PTHEE +T    + I S + LP   YQI  KFR
Sbjct: 86  EKSGRWQKTGSELFRLHDRNDREMCLAPTHEEDVTRTMATIIDSQKQLPIRVYQIGRKFR 145

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DELRPR G++R REF+MKD Y+FD+    +  +Y  +  +Y   F  +GL  + ++A +G
Sbjct: 146 DELRPRGGLLRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFVMVKAATG 205

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            IGG+LSHEF      GE  ++       +   SE  D                    +S
Sbjct: 206 NIGGNLSHEFHYRHPVGEDVIYTCPS-CHYSTNSEMLDLSK----------------TSS 248

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           D+      D L      S   IEVGH FY G  YS   +AT +    K   + MG YGIG
Sbjct: 249 DISCPNCNDQL-----TSTTAIEVGHAFYLGKIYSSKFNATVE-VKNKQEVLHMGCYGIG 302

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY-ARLSKVGCD- 378
             R++AAV   + D KG++WP S+AP+K+  + +   D   + A E +Y A  + VG D 
Sbjct: 303 VSRLIAAVAHVTKDAKGLVWPSSIAPWKV--LVVPTSDNHIQSA-ETVYDATANVVGFDN 359

Query: 379 -VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM---SLEEV 434
            +  D      G +   A+L+G+P  ++VGS+F  +   EI  R +G R  +   SL +V
Sbjct: 360 VLLEDRQNRAFGYKMRDAELIGYPFVIVVGSRFQEEGICEIIVRSSGERYKLDKDSLHQV 419

Query: 435 I 435
           +
Sbjct: 420 L 420


>gi|332184487|gb|AEE26741.1| Prolyl-tRNA synthetase Bacterial type [Francisella cf. novicida
           3523]
          Length = 565

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 159/230 (69%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLRDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNIMYTT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDY 229



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 105/181 (58%), Gaps = 5/181 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K       GIEVGHIF     YS PM+A     DGK   + MG 
Sbjct: 382 VADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIDQDGKSKPMLMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSK 374
           YG G  RV+AA IE SHD  GIIWP+++AP+++++  IN    D+V ++  +K+Y  L  
Sbjct: 442 YGFGVSRVMAAAIEQSHDQNGIIWPEAIAPYQVAILPINYNKSDKV-KEVADKLYQDLLT 500

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+
Sbjct: 501 NGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITVTEL 560

Query: 435 I 435
           I
Sbjct: 561 I 561


>gi|257884339|ref|ZP_05663992.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|261207398|ref|ZP_05922084.1| prolyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289566680|ref|ZP_06447097.1| prolyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294613940|ref|ZP_06693875.1| prolyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|257820177|gb|EEV47325.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|260078289|gb|EEW65994.1| prolyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289161539|gb|EFD09422.1| prolyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291593215|gb|EFF24789.1| prolyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 569

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 11/183 (6%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N  V A  RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++
Sbjct: 391 DPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD  E
Sbjct: 451 AIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + G +FA +DL+G P+++ VG K V D  VE+K + TG        E++       +N  
Sbjct: 511 RAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTG--------EMVEVRKEELANTL 561

Query: 447 PVL 449
           P+L
Sbjct: 562 PIL 564


>gi|325847870|ref|ZP_08170092.1| proline--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480888|gb|EGC83941.1| proline--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 572

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 161/239 (67%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+++P+DAE  SHKL++R   I + S G+YS+LPLG + ++ +  I+R+ 
Sbjct: 1   MRLSNYYMPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMRVINKIENIVRKS 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  +IE+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T + + 
Sbjct: 61  MEKYDSIEVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREYCLGPTAEEQFTSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLEKSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y+ +F  LGL    +  +SG +GG+ SHEF+ LA+TGE ++F +++  D+    E+  F
Sbjct: 181 YVEVFDALGLDYKIVEGDSGAMGGNTSHEFMALAETGEGEIFYTEN-SDYAATDESAKF 238



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 91/159 (57%), Gaps = 5/159 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R ++A+IE ++D  GI
Sbjct: 404 ARGIEVGNIFQLGTKYSESLEAYFLDENGKQKPFIMGSYGIGITRSISAIIEQNYDDNGI 463

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  VAPF+  I+L+N    DQ  +   EKIY  L   G +V  DD  E+ G +F   D
Sbjct: 464 IWPTKVAPFEAWITLVNKNKEDQ--KQLAEKIYESLLDQGIEVMLDDRKERAGVKFNDRD 521

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P ++ VG K  SD  VE   R       MS +E I
Sbjct: 522 LVGCPYRITVG-KDASDDIVEFSKRSDMENLKMSSDEAI 559


>gi|69246859|ref|ZP_00604151.1| Prolyl-tRNA synthetase, bacterial [Enterococcus faecium DO]
 gi|257889274|ref|ZP_05668927.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|258615945|ref|ZP_05713715.1| prolyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560114|ref|ZP_05832292.1| prolyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293560203|ref|ZP_06676705.1| prolyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|314937502|ref|ZP_07844835.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942161|ref|ZP_07849015.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314947499|ref|ZP_07850914.1| prolyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951486|ref|ZP_07854535.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314992576|ref|ZP_07857994.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314995489|ref|ZP_07860589.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195040|gb|EAN09503.1| Prolyl-tRNA synthetase, bacterial [Enterococcus faecium DO]
 gi|257825634|gb|EEV52260.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260073949|gb|EEW62273.1| prolyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291605875|gb|EFF35307.1| prolyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313590323|gb|EFR69168.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313592868|gb|EFR71713.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596326|gb|EFR75171.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313599084|gb|EFR77929.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313643143|gb|EFS07723.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313646049|gb|EFS10629.1| prolyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 569

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N  V A  RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++
Sbjct: 391 DPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD  E
Sbjct: 451 AIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + G +FA +DL+G P+++ VG K V D  VE+K + TG   ++  EE++N
Sbjct: 511 RAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELVN 559


>gi|257887080|ref|ZP_05666733.1| prolyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257895645|ref|ZP_05675298.1| prolyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293377744|ref|ZP_06623933.1| proline--tRNA ligase [Enterococcus faecium PC4.1]
 gi|257823134|gb|EEV50066.1| prolyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257832210|gb|EEV58631.1| prolyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|292643744|gb|EFF61865.1| proline--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 569

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 11/183 (6%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N  V A  RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++
Sbjct: 391 DPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD  E
Sbjct: 451 AIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + G +FA +DL+G P+++ VG K V +  VE+K + TG        E++       +N  
Sbjct: 511 RAGVKFADSDLIGCPIRITVGKKAV-EGIVEVKIKKTG--------EMVEVRKEELANTL 561

Query: 447 PVL 449
           P+L
Sbjct: 562 PIL 564


>gi|257898235|ref|ZP_05677888.1| prolyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293570616|ref|ZP_06681667.1| prolyl-tRNA synthetase [Enterococcus faecium E980]
 gi|257836147|gb|EEV61221.1| prolyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291609287|gb|EFF38558.1| prolyl-tRNA synthetase [Enterococcus faecium E980]
          Length = 569

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 11/183 (6%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N  V A  RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++
Sbjct: 391 DPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD  E
Sbjct: 451 AIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + G +FA +DL+G P+++ VG K V D  VE+K + TG        E++       +N  
Sbjct: 511 RAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTG--------EMVEVRKEELANTL 561

Query: 447 PVL 449
           P+L
Sbjct: 562 PIL 564


>gi|257878529|ref|ZP_05658182.1| prolyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257882947|ref|ZP_05662600.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257894712|ref|ZP_05674365.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|293567720|ref|ZP_06679062.1| prolyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|294618726|ref|ZP_06698258.1| prolyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|294620760|ref|ZP_06699967.1| prolyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|257812757|gb|EEV41515.1| prolyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818605|gb|EEV45933.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257831091|gb|EEV57698.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|291589563|gb|EFF21369.1| prolyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291595039|gb|EFF26384.1| prolyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291599740|gb|EFF30750.1| prolyl-tRNA synthetase [Enterococcus faecium U0317]
          Length = 569

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 104/183 (56%), Gaps = 11/183 (6%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N  V A  RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++
Sbjct: 391 DPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E   D +GI WP  +APF + ++ +   D+       ++   ++K G +V  DD  E
Sbjct: 451 AIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTSLTNELEEAMTKAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + G +FA +DL+G P+++ VG K V D  VE+K + TG        E++       +N  
Sbjct: 511 RAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTG--------EMVEVRKEELANTL 561

Query: 447 PVL 449
           P+L
Sbjct: 562 PIL 564


>gi|227551759|ref|ZP_03981808.1| proline--tRNA ligase [Enterococcus faecium TX1330]
 gi|227179064|gb|EEI60036.1| proline--tRNA ligase [Enterococcus faecium TX1330]
          Length = 569

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 11/183 (6%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N  V A  RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++
Sbjct: 391 DPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD  E
Sbjct: 451 AIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + G +FA +DL+G P+++ VG K V +  VE+K + TG        E++       +N  
Sbjct: 511 RAGVKFADSDLIGCPIRITVGKKAV-EGIVEVKIKKTG--------EMVEVRKEELANTL 561

Query: 447 PVL 449
           P+L
Sbjct: 562 PIL 564


>gi|293556646|ref|ZP_06675211.1| prolyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601181|gb|EFF31468.1| prolyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 569

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKILIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 104/183 (56%), Gaps = 11/183 (6%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N  V A  RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++
Sbjct: 391 DPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E   D +GI WP  +APF + ++ +   D+       ++   ++K G +V  DD  E
Sbjct: 451 AIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTSLTNELEEAMTKAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + G +FA +DL+G P+++ VG K V D  VE+K + TG        E++       +N  
Sbjct: 511 RAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTG--------EMVEVRKEELANTL 561

Query: 447 PVL 449
           P+L
Sbjct: 562 PIL 564


>gi|73748213|ref|YP_307452.1| prolyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|114152188|sp|Q3ZZD0|SYP_DEHSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|73659929|emb|CAI82536.1| prolyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
          Length = 569

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 157/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE   ++C K
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPK 226



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 92/159 (57%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R++AA IE +HD K
Sbjct: 398 ASKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCYGMGVGRLLAAAIEQNHDEK 457

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP  +AP+++ +  +   + V R++ EKIYA L   G +V +DD     G +F  AD
Sbjct: 458 GIIWPMPIAPYQVYICGLFLDNPVVRESAEKIYAELEAKGIEVLFDDRELTAGVKFNDAD 517

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG PL++ +  + +    VE K R     E + L+ ++
Sbjct: 518 LLGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIV 556


>gi|239618079|ref|YP_002941401.1| prolyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|259511603|sp|C5CFP9|SYP_KOSOT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239506910|gb|ACR80397.1| prolyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 581

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/224 (47%), Positives = 155/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P DA++ S KL++R G + +++ G+Y++LPLG + L  V  I+REE
Sbjct: 1   MRFSQLYAPTLKEAPSDADLVSIKLLIRGGFVRKNAAGVYTYLPLGLRVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P +Q A+LW ESGR+D YG EM++  DR+++    GPTHEE++T I R+
Sbjct: 61  MAAIGCQEILMPIIQPAELWFESGRWDDYGPEMMKFKDRHERDFTLGPTHEELLTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR  P + +QI  K+RDE+RPRFG++R+REFLMKDAYSF    E    +Y   + +
Sbjct: 121 ELRSYRQFPLSLFQIANKYRDEIRPRFGLIRAREFLMKDAYSFHTDWESLDKAYKDFYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RI  R+GLK + + A++G IGGD SHEF  LADTGE T ++C
Sbjct: 181 YGRIMERIGLKYLVVEADTGAIGGDESHEFNALADTGESTLLYC 224



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIE+GHIF  GTKYS  M+  F   +G++H   MG YG G  R ++AV+E  HD  G+
Sbjct: 404 TKGIELGHIFKLGTKYSEKMNGYFTDENGENHPYIMGCYGWGISRTMSAVVEQMHDEHGM 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+APF I +  +    +      E++Y  L K   +V  DD     G +F  ADL+
Sbjct: 464 IWPLSIAPFHIIITMVNPSQEQISKVGEELY-ELLKEKYEVLLDDRQASPGVKFKDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G PL++ VG K ++   +E+K R      ++S+ E
Sbjct: 523 GIPLRITVGKK-LTKGLIELKLRTEKQLVEVSISE 556


>gi|152990768|ref|YP_001356490.1| prolyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|166980135|sp|A6Q3S4|SYP_NITSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151422629|dbj|BAF70133.1| prolyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 569

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 152/226 (67%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P ++ENP+DA + SH  ++R G I Q + GIY++LP+G+K LD + AI++EE
Sbjct: 1   MRFSKTFIPTMKENPKDAVLPSHIYLVRGGFITQVASGIYNFLPIGKKVLDKIRAIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+S+  +   +LW ESGR   YGKE+LR  DR +   + GPTHEE+M D+ R+
Sbjct: 61  LDKAGCQEVSLGFVTPCELWEESGRLGKYGKELLRFKDRKENCFVLGPTHEEMMVDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E  +  Y+ M  +
Sbjct: 121 RVTSYKQLPLNLYQINWKFRDEARPRFGLLRGREFLMKDGYSFHADEEDMRREYDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y  IF RLGL+   + A+ G IGG+ S EF+VLA++GE T   C++
Sbjct: 181 YRNIFGRLGLRFRAVEADVGAIGGNASKEFMVLAESGEDTIAICTE 226



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 97/158 (61%), Gaps = 5/158 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  GT+YS  M+ATF   DGK     MG+YGIG  R+VAA IE +HD +G 
Sbjct: 404 TKGIEVGHIFQLGTRYSAAMNATFLDKDGKAKPFVMGTYGIGVSRLVAASIEQNHDERGC 463

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +APF++ +I  NIK  +Q+     E++Y +L   G DV  DD  E+ G +    +
Sbjct: 464 IWPLQIAPFEVDIIVSNIKDEEQIAFG--EELYEQLKNAGVDVILDDRPERFGPKIKDFE 521

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L+GFP  +IVG K + +  V+I  R T  + ++  E+V
Sbjct: 522 LIGFPYGIIVG-KGLKEGTVQIVQRETLDKVEIPKEDV 558


>gi|299143351|ref|ZP_07036431.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517836|gb|EFI41575.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 584

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/218 (49%), Positives = 149/218 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK ++P L+E P DAEIASH+L+LR   I + + GIY++LPLG K +  V  I+REE
Sbjct: 1   MKLSKLYMPTLREVPADAEIASHQLLLRGAFIRKSASGIYTYLPLGYKVIKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W  S R+D +G EM +L DRND+    GPT EE  T + + 
Sbjct: 61  MDRAGSQEILMSAIQPKEIWEASDRWDRFGPEMFKLRDRNDREFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPRFG+ R+REF MKDAYSFD TPE  + SY +M+ +
Sbjct: 121 EVKSYKQLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYSFDTTPETMQVSYMEMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF RLGL    +  ++G +GG  SHEFI L++TGE
Sbjct: 181 YEKIFDRLGLDYKIVEGDNGAMGGKKSHEFIALSETGE 218



 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 1/167 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG+IF  GTKYS  ++AT+   +GK+  + MGSYG+G  R V A++E ++D  GI
Sbjct: 403 ARGIEVGNIFQLGTKYSEALNATYLDENGKEQLIWMGSYGVGVTRTVTAIVEQNYDENGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+ + +  +   D++  +  EKIY  L ++G +V  DD  E+ G +F   DL+
Sbjct: 463 IWPMSVAPYHVIVTVVNPKDEIQLELGEKIYNSLVELGHEVLLDDRNERAGVKFKDRDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P+++ VG K  ++  VE   R    + ++  +E I   S    N+
Sbjct: 523 GIPIRITVG-KRAAEEIVEYSLRRETEKTEIFAKEAIEKVSGEIFNS 568


>gi|257784517|ref|YP_003179734.1| prolyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257473024|gb|ACV51143.1| prolyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 565

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 153/221 (69%), Gaps = 1/221 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  + P L+E+P +A +ASH+L+LR GMI + + G+YS+LPL  ++L  + AIIR+E + 
Sbjct: 2   SSLYAPTLKEDPAEAVLASHRLLLRAGMIRKTAAGLYSYLPLAWRSLLKIEAIIRDEMDG 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+ VP +  A+LW ESGR+D YG E++R+ DR+D+    GPTHEE  TD+ R+ +K
Sbjct: 62  IGAQEILVPIMTPAELWEESGRWDVYGDELMRMHDRHDRQFALGPTHEETFTDLIRNELK 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+ LP T YQIQ KFRDE RPRFG+MR REF+MKD YSF    E  +  Y++  V+Y  
Sbjct: 122 SYKQLPVTLYQIQDKFRDERRPRFGLMRGREFIMKDGYSFSANQESLQECYDQEKVAYQN 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           +  R  L+++ + A+SG IGGD S EF+ LA+ GE   V+C
Sbjct: 182 VCDRTRLRALQVVADSGQIGGDTSVEFMALAEAGEASLVYC 222



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEVG +F  GTKYS  ++ATF   +G+D  + MG YGIG  R++AAV+E  +D KG
Sbjct: 395 AARGIEVGQVFQLGTKYSSALNATFTDENGQDKPLVMGCYGIGVSRLLAAVVEQYNDEKG 454

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I WP SVAP+++S++ +   D    DA   +       G +   DD  E+ G +FA ADL
Sbjct: 455 IKWPVSVAPYEVSVLCLSNKDPEIWDAAGAVADACVAAGLETVVDDRVERPGVKFADADL 514

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +GFP QVIVG K V++   E+K R TG R +++L+EV ++ + +    R
Sbjct: 515 IGFPWQVIVGKKGVTNGIAEVKERATGERFEVALDEVASWLAEKILPER 563


>gi|152992232|ref|YP_001357953.1| prolyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166980164|sp|A6Q7Y7|SYP_SULNB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151424093|dbj|BAF71596.1| prolyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 568

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 151/225 (67%), Gaps = 2/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIRE 59
           MR S+  +P  +E P DA +ASH  ++R G I      G+Y++LPLG+K LD V  +++E
Sbjct: 1   MRFSRLLIPTTKETPNDATLASHIYLIRGGFIQSVGGSGLYNFLPLGKKVLDRVRNVVKE 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G  E+S+  +  A LW ESGRY+ YGKE+LR  DR +   + GPTHEE+M ++ R
Sbjct: 61  ELDKAGCQEVSLSFVTPASLWEESGRYEKYGKELLRFKDRKNNEFVLGPTHEEMMVNLVR 120

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +KSY+ LP   YQI LKFRDE+RPRFG+MR REFLMKD YSF  + E  K  ++ M  
Sbjct: 121 QSVKSYKQLPLNLYQINLKFRDEIRPRFGLMRGREFLMKDGYSFHTSEEDMKREFDLMEE 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           +Y +IF RLGL+   + A+SG IGG  S EF+VLAD+GE T V C
Sbjct: 181 TYKKIFTRLGLEFRVVEADSGAIGGSGSKEFMVLADSGEDTIVVC 225



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 98/165 (59%), Gaps = 5/165 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIE GHIF  GT+YS P+ ATF   +GK   + MG+YGIG  R++AA+IE +HD +G 
Sbjct: 406 TKGIEAGHIFQLGTQYSEPLGATFLDENGKAQPMVMGTYGIGVSRLLAAIIEQNHDDRGC 465

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW    APF + LI  NIK   QV     EK+Y  L+  G DV +DD  ++ G++    +
Sbjct: 466 IWTKESAPFDLQLIVSNIKDETQVALG--EKLYEALTAKGLDVLFDDRKDRFGAKMKDYE 523

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           LLG P  V++G K + D  VE   R   ++E++S E +++    R
Sbjct: 524 LLGIPYAVVIGKK-LQDGLVEFISREGLVKEEVSAEAILDVVGER 567


>gi|330936741|gb|EGH40917.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 548

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/201 (52%), Positives = 147/201 (73%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +LMLR GMI + + G+Y+WLP+G + L  V AI+REE +  GA+E+ +P +Q A+LW ES
Sbjct: 1   QLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREEMDAAGALEILMPGIQPAELWQES 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR++ YG E++RL DR+++    GPTHEEV+TD+ R+ + SY+ LP   YQIQ KFRDE+
Sbjct: 61  GRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARNELNSYKQLPINLYQIQTKFRDEI 120

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPRFG+MR REF+MKDAYSF    E  + +Y++M ++Y  IF RLGLK  P+ A++G IG
Sbjct: 121 RPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLAYSNIFTRLGLKFRPVEADNGSIG 180

Query: 204 GDLSHEFIVLADTGETQVFCS 224
           G  SHEF VLA++GE  +  S
Sbjct: 181 GAGSHEFHVLAESGEDDIVFS 201



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 355 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 414

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++      R+A +K+YA L
Sbjct: 415 AMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYETDAVREATDKLYADL 474

Query: 373 SKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +E K R     + ++
Sbjct: 475 TAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNLEYKSRTESQPQAIA 534

Query: 431 LEEVINY 437
           + +V+++
Sbjct: 535 VADVLSF 541


>gi|281419389|ref|ZP_06250404.1| prolyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|281407009|gb|EFB37272.1| prolyl-tRNA synthetase [Clostridium thermocellum JW20]
          Length = 572

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 152/224 (67%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++ +C
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSGSQEFMVKSAVGESRIAYC 224



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 87/141 (61%), Gaps = 1/141 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  +   +    GK+  + MG YGIG  R +AAVIE ++D  GIIW
Sbjct: 406 GIEVGHIFKLGTKYSEALDCIYLDETGKERPMIMGCYGIGINRSMAAVIEQNNDENGIIW 465

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P S+AP+ + +I +   D V  +  EKIY +L ++G +V  DD  E+ G +F  ADL+G 
Sbjct: 466 PISIAPYHVIVIPVNTTDSVQMELAEKIYTQLGEMGIEVLLDDRDERPGVKFKDADLIGI 525

Query: 401 PLQVIVGSKFVSDSKVEIKHR 421
           P+++ VG +   +  VE K R
Sbjct: 526 PIRITVGKR-AGEGIVEYKLR 545


>gi|242309901|ref|ZP_04809056.1| prolyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523198|gb|EEQ63064.1| prolyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 578

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 155/226 (68%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+P L+E P+D  + SH+ +LR G I Q   GIY++LPLG++ LD ++ I+++E
Sbjct: 1   MRFSNFFIPTLKETPKDVVLKSHEYLLRGGFIQQIGSGIYNFLPLGKRVLDKISKIVKQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRY+ YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDNAGANEVLLGCVTPASLWQASGRYERYGKELLRFKDRKENEFVFGPTHEETITELVKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K  +++M  +
Sbjct: 121 YVKSYKQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSSYEDLKREFDEMERT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF +LGL    + A+SG IGG  S EF+VLA++GE  + C  D
Sbjct: 181 YSVIFSKLGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTI-CVCD 225



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG  R++AA+IE  +D KG+
Sbjct: 411 TKGIEVGHIFQLGEKYSQAMGATFLDENGKSKPFIMGCYGIGISRLLAAIIEQHYDEKGM 470

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            W  + APF + ++  N+K  +QV  +   +IY  LS+   +   DD  E+ G++ A  +
Sbjct: 471 KWTKATAPFLLDIVISNVKDCEQV--ELATRIYHALSEQKIECLLDDRNERYGAKMADFE 528

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P  +IVG K + + KVE+  R
Sbjct: 529 LIGMPYALIVG-KGIQEGKVELVCR 552


>gi|291566398|dbj|BAI88670.1| prolyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 601

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEESLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLYTPD 229



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 5/176 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +E 
Sbjct: 428 PSQTLESARGIEVGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++AP+   I++ N+  + Q+     +++Y++L++ G +   DD  E+ G
Sbjct: 488 SYDKDGIIWPVAIAPYHAIITVPNVSDNQQMA--IAQQLYSQLNQAGVETLLDDRNERAG 545

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S +
Sbjct: 546 VKFKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKISQS 600


>gi|325479231|gb|EGC82327.1| proline--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 572

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E+P DAE ASHK + R   I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MRLSKYYMPTLREDPVDAETASHKYLTRGAFIRKQASGVYSFLPLGKKVINKIEAIVRES 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM +L DR+++    GPT EE  TD+ ++
Sbjct: 61  MENHDSIEVSTSILQAKEIWETSGRWETFGPEMFKLEDRHNRQYCLGPTAEEAFTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD + EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDASYEGLELSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y+  F ++GL+   +  +SG +GG  SHEFI L++TGE  +  + D  D+    E   F
Sbjct: 181 YVEAFDKMGLEYKIVEGDSGSMGGRKSHEFIALSETGEGVILYT-DSSDYAATDEKARF 238



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 101/174 (58%), Gaps = 9/174 (5%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R V+A++E  HD KG
Sbjct: 402 AARGIEVGNIFQLGTKYSESLEAYFLDENGKQQPFIMGSYGIGISRSVSAIVEQYHDDKG 461

Query: 338 IIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           I+WP SVAPF+  +++IN    DQ  ++  E+IY +L +   DV  DD  E+ G +F   
Sbjct: 462 ILWPTSVAPFEAIVTIINPNKEDQ--KELGEEIYNKLKEERIDVLLDDRKERAGVKFNDR 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFSNN 445
           DL+G P ++ VG K  SD  VE   R       I  D ++E++I+      S N
Sbjct: 520 DLIGIPYRITVG-KDASDEIVEYSTRREMENEKITVDTAIEKIISSVKKDLSFN 572


>gi|256005276|ref|ZP_05430242.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|255990712|gb|EEU00828.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|316939553|gb|ADU73587.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 572

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 152/224 (67%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++ +C
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSGSQEFMVKSAVGESRIAYC 224



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  +   +    GK+  + MG YGIG  R +AAVIE ++D  GIIW
Sbjct: 406 GIEVGHIFKLGTKYSEALDCIYLDETGKERPMIMGCYGIGINRSMAAVIEQNNDENGIIW 465

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P S+AP+ + +I +   D V  +  EKIY +L ++G +V  DD  E+ G +F  ADL+G 
Sbjct: 466 PISIAPYHVIVIPVNTTDSVQMELAEKIYTQLGEMGIEVLLDDRDERPGVKFKDADLIGI 525

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P+++ VG +   +  VE K R       +  EE I  A    +  
Sbjct: 526 PIRITVGKR-AGEGIVEYKLRREKDFAAIPYEEAIAKAKEEVAEG 569


>gi|257065041|ref|YP_003144713.1| prolyl-tRNA synthetase, family II [Slackia heliotrinireducens DSM
           20476]
 gi|256792694|gb|ACV23364.1| prolyl-tRNA synthetase, family II [Slackia heliotrinireducens DSM
           20476]
          Length = 570

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/224 (48%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  ++P L+E+P DA+I S KL+ R GMI + + G+YS+LPLG + L  +  I+REE
Sbjct: 10  LRMSTMYVPTLKEDPSDADIPSAKLLTRAGMIRKEAAGLYSFLPLGLRVLRKIENIVREE 69

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +QSADLW +SGR+ +YG+EM+ + DR+D     GPT EEV+TD+ ++
Sbjct: 70  MDSHGGEELLMPFVQSADLWRQSGRWGAYGEEMMTMRDRHDNEFCLGPTAEEVITDLVKN 129

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   Y IQLKFRDE RPRFG++RSREF+MKDAYSFD   EG + +Y  M  +
Sbjct: 130 ELRSYKDLPKNLYHIQLKFRDERRPRFGLLRSREFIMKDAYSFDKDQEGLEVNYQLMRDA 189

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y R+  R+G++   ++A+ G IGG+ + EF+ LA+TGE + V+C
Sbjct: 190 YSRMCERMGMEYRIVQADPGEIGGNGTEEFMTLAETGEAELVYC 233



 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 101/160 (63%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEVG IF  GTKYS  M A F   DG +    MG YG+G  R +AA +E SHD  G
Sbjct: 406 AARGIEVGQIFKLGTKYSEAMGALFMDEDGTEKPFIMGCYGVGVSRCMAAAVEQSHDDMG 465

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP  +AP  +++I +        +A E + A+L+  G +V  DD  E+ G +FA  DL
Sbjct: 466 IIWPVGIAPAHVAVIPLSTKPDEVTEAAEDVAAKLAAAGLEVCIDDRDERAGVKFADNDL 525

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G+P QV++G + ++   VE+K+R TG + D+++++V+++
Sbjct: 526 IGWPAQVVIGKRGLAAGTVEVKNRKTGEKTDVAVDDVVSF 565


>gi|256396855|ref|YP_003118419.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256363081|gb|ACU76578.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 582

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/223 (49%), Positives = 150/223 (67%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + GIYSWLPLG++ L+NV  ++REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRGGYVRRVAPGIYSWLPLGKQVLENVTRVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ +S 
Sbjct: 64  DRMGGQEVQFPALLPREYYEATGRWTEYGDNLFRLQDRRGNDYLLGPTHEEMFTDMVKSE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++LP T YQIQ K+RDE RPR G++R REFLMKD+YSFDL  +G KHSY +   +Y
Sbjct: 124 VSSYKDLPVTLYQIQTKYRDEARPRAGILRGREFLMKDSYSFDLDDDGLKHSYAEHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           +RIF RLG+K   + A SG +GG  S EF+  A TGE T V C
Sbjct: 184 IRIFDRLGIKYKIVSAVSGAMGGSASEEFLATAPTGEDTYVAC 226



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+        G DGK   V MGSYG+G  R VA + E  HD  G++
Sbjct: 418 RGIEIGHIFQLGRKYADAAKLDVLGKDGKPVRVTMGSYGVGVSRAVAVLAEQLHDELGLV 477

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVADL 397
           WP  VAP  + ++     D    +   +    L   G  V +DD    +  G +F  A+L
Sbjct: 478 WPREVAPADVHIVA-AGKDPAIYETANRYAEELGARGVRVLYDDRVGSVSPGVKFKDAEL 536

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P  V+VG + ++D  VE++ R TG + ++++ +++ +
Sbjct: 537 IGVPTIVVVG-RNLADGVVEVRDRQTGEKAEVAVPDLVEH 575


>gi|125975428|ref|YP_001039338.1| prolyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|152016597|sp|A3DJL6|SYP_CLOTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125715653|gb|ABN54145.1| prolyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
          Length = 572

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 152/224 (67%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++ +C
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSDSQEFMVKSAVGESRIAYC 224



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 87/141 (61%), Gaps = 1/141 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  +   +    GK+  + MG YGIG  R +AAVIE ++D  GIIW
Sbjct: 406 GIEVGHIFKLGTKYSEALDCIYLDETGKERPMIMGCYGIGINRSMAAVIEQNNDENGIIW 465

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P S+AP+ + +I +   D V  +  EKIY +L ++G +V  DD  E+ G +F  ADL+G 
Sbjct: 466 PISIAPYHVIVIPVNTTDSVQMELAEKIYTQLGEMGIEVLLDDRDERPGVKFKDADLIGI 525

Query: 401 PLQVIVGSKFVSDSKVEIKHR 421
           P+++ VG +   +  VE K R
Sbjct: 526 PIRITVGKR-AGEGIVEYKLR 545


>gi|227824508|ref|ZP_03989340.1| prolyl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226905007|gb|EEH90925.1| prolyl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 571

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 161/245 (65%), Gaps = 3/245 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P +A + SHKLMLR G I + + G+Y++LPL  K++  +  IIREE
Sbjct: 1   MLVSKLYAPTLREVPAEAVLESHKLMLRAGYIRKIAGGLYTYLPLAWKSIKKIERIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   + E+ +P +Q +++W ESGR+D YG EM R+ DR+ +    GPTHEE++T + ++
Sbjct: 61  MDAIDSQEIMMPIVQPSEIWKESGRWDVYGAEMFRVRDRHGREFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP + YQIQ KFRDE RPRFG+MRSREF+MKDAY+FD    G   SY KM+ +
Sbjct: 121 ELHSYRQLPTSLYQIQSKFRDEKRPRFGLMRSREFIMKDAYTFDADEAGLDESYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y RIF R GL   P+ A+ G IGG+ SHEF+ +A +GE   V+C  D  D+    E  + 
Sbjct: 181 YARIFDRCGLNYRPVEADPGAIGGNGSHEFMGIAASGEAGIVYC--DTCDYAADVEKAEC 238

Query: 240 DDIIS 244
           + + S
Sbjct: 239 EALPS 243



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 118/237 (49%), Gaps = 17/237 (7%)

Query: 200 GPIGGDLSHEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           GPIG DL+   I++  T      V C  + +D       T + D       V      Y 
Sbjct: 333 GPIGLDLNKCTILIDATVMNMHNVCCGANEVD-------THYVDAEPCRDFV------YT 379

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D  P  K     ARGIEVG +F   TKYS  + ATF   +GK+    MG
Sbjct: 380 KVLDIRTAHEGDQCPHCKGHLKEARGIEVGQVFKLYTKYSEALHATFLDPEGKEKPFYMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +AAVIE  HD  G I P ++AP+++ ++ +   D+       +IY  L+  
Sbjct: 440 SYGIGVGRTLAAVIEQYHDANGAIMPKNIAPYEVIVLPVNVKDEESFAKAGEIYQALNAQ 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           G D   DD  E+ G +F  ADL+G+P++V+VG K +    +E+K R TG   D+ L+
Sbjct: 500 GIDAILDDRDERAGVKFKDADLIGYPVRVVVGPKTLQRGAMEVKVRYTGEMCDLPLD 556


>gi|56752145|ref|YP_172846.1| prolyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|81820564|sp|Q5N044|SYP_SYNP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56687104|dbj|BAD80326.1| proline-tRNA ligase [Synechococcus elongatus PCC 6301]
          Length = 600

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQETLLPQLQPAELWQESGRWETYAKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 121 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D
Sbjct: 181 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTED 229



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 89/146 (60%), Gaps = 5/146 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D  G
Sbjct: 432 SARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDKDG 491

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP++  ++  NI   +QV   A EKIYA L+  G +   DD  E+ G +F  A
Sbjct: 492 IIWPVAIAPYQAVVVIPNITDTEQVA--AAEKIYADLTAAGIETLLDDRDERAGVKFKDA 549

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           DL+G P +++ G + + + KVE+  R
Sbjct: 550 DLIGIPYRIVTG-RSLKEGKVEVVQR 574


>gi|260424720|ref|ZP_05778980.1| proline--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402944|gb|EEW96491.1| proline--tRNA ligase [Dialister invisus DSM 15470]
          Length = 576

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/266 (44%), Positives = 165/266 (62%), Gaps = 17/266 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA + SH+ ML+ GM+ + S G+Y++LPL  +++  V  I+REE
Sbjct: 3   MLASKLYSPTLREIPSDAVVVSHQYMLKAGMMRKVSNGLYAFLPLALRSVRKVEDIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G+ E+ +P  Q A++W +S R+D YG+EM +L DR+      GPTHEE++T + + 
Sbjct: 63  MNAIGSQEILMPITQPAEIWKQSERWDVYGEEMFKLNDRHGHEYCLGPTHEELVTVLAKM 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 123 DTSSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDMDEEGLDRQYHLMYDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL   P+ A+SG IGG  SHEF V+AD+GE  +   KD  DF    E  +  
Sbjct: 183 YTRIFTRCGLHFRPVVADSGAIGGSGSHEFEVIADSGEADIVYCKD-CDFAANIEAVE-- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEK 266
                         P A +S VHN+K
Sbjct: 240 --------------PKALSSSVHNDK 251



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 94/155 (60%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG +F  GTKYS  +  T+   DGK H + MG YGIG  R VAA IE +HD  GII
Sbjct: 406 KGIEVGQVFKLGTKYSEKLGCTYLDRDGKTHPMVMGCYGIGITRTVAASIEQNHDKDGII 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++AP+++ ++     D+   +A   +Y ++     +V  DD  E+ G +F  ADL+G
Sbjct: 466 WPVAIAPYEVVIVPANNKDEGVMNAARHLYDKMEDCRDEVILDDRDERAGIKFKDADLIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +P++V +G K+     VE++ R +G+  +++L + 
Sbjct: 526 YPIRVTIGKKWKESGLVEVRLRRSGVVSEVALADC 560


>gi|307297853|ref|ZP_07577659.1| prolyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306917113|gb|EFN47495.1| prolyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 580

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/224 (47%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P DA++ S KL++R G + + + GIYS+LPLG + L  +  I+R+E
Sbjct: 1   MRFSQLYAPTLKEAPADADLISIKLLVRGGFVRKVAAGIYSFLPLGFRVLKKIEDIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G+ E+ +P +Q A+LW E+GR+D YG EM+R+ DR+++    GPTHEE++T + R+
Sbjct: 61  MNAIGSQEILMPIIQPAELWHETGRWDDYGPEMMRMQDRHERFFTLGPTHEEIITHLLRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQI +K+RDE+RPRFG+MRSREFLMKDAYSF  +      +Y + + +
Sbjct: 121 ELNSYKQLPVSLYQIAMKYRDEIRPRFGLMRSREFLMKDAYSFHGSWSSLDETYKQFYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y +I  R+GL+ + + A+SG IGG+ SHEF VLAD GE T ++C
Sbjct: 181 YSKILQRIGLEFLVVEADSGAIGGNESHEFNVLADYGESTLLYC 224



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 95/175 (54%), Gaps = 5/175 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SA+GIEVGHIF  GTKYS  M+       G   +  MG YG G  R ++A++E  HD  G
Sbjct: 401 SAKGIEVGHIFKLGTKYSEKMNGYVTDEKGNSIHYIMGCYGWGVSRTISAIVEQLHDENG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP +VAPF I +  +   D +  +   ++Y  LS+ G +V  DD     G +F  ADL
Sbjct: 461 IIWPLAVAPFDIIVTAVNIKDPIVSEKSIQLYDILSEAGFEVLLDDREISPGMKFKDADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL----EEVINYASHRFSNNRPV 448
           +G P+++ +G K ++   VE+K R      ++S+    + ++       SN RPV
Sbjct: 521 IGIPVRITLGKK-LAQGIVEVKPRTEKKPLEVSIVDGFDTLLEEIKKELSNYRPV 574


>gi|289432262|ref|YP_003462135.1| prolyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288945982|gb|ADC73679.1| prolyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 569

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 156/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D  ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDHNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE   ++C K
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPK 226



 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 90/158 (56%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R++AA IE +HD KG
Sbjct: 399 SKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCYGMGVGRLLAAAIEQNHDEKG 458

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP  +AP+++ +  +   + V R++ EKIY  L     +V +DD     G +F  ADL
Sbjct: 459 IIWPMPIAPYQVYICGLFLDNPVVRESAEKIYKELEAKSIEVLFDDRELTAGVKFNDADL 518

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LG PL++ +  + +    VE K R     E + L+ ++
Sbjct: 519 LGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIV 556


>gi|282896497|ref|ZP_06304517.1| Prolyl-tRNA synthetase [Raphidiopsis brookii D9]
 gi|281198603|gb|EFA73484.1| Prolyl-tRNA synthetase [Raphidiopsis brookii D9]
          Length = 604

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 117/229 (51%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  ++ IIREE
Sbjct: 2   MRLSQKLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKISQIIREE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 62  MNATGAEECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQHLGLGPTHEEVITTI 121

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 122 GRDMIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEESLKKTYQDM 181

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D
Sbjct: 182 YKAYSNILRRCGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTQD 230



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 5/167 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIE GHIF  GTKYSL M AT+    G++  + MG YG+G  R+  + +E 
Sbjct: 428 PSQTLETARGIEAGHIFQLGTKYSLAMGATYTNEQGEEKPLVMGCYGVGVSRLAQSAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+DG GIIWP ++AP+   IS+ NIK   QV  +  EKIY  L+KVG +   DD  E+ G
Sbjct: 488 SYDGDGIIWPVAIAPYHAIISIPNIKDSQQV--EIAEKIYTELNKVGIETLLDDRNERAG 545

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +F  ADL+G P +++ G + ++  KVE+  R T   +++++E+++N
Sbjct: 546 VKFKDADLIGIPYRIVTG-RSITHGKVEVVTRATRESKEIAIEDLVN 591


>gi|213405351|ref|XP_002173447.1| prolyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212001494|gb|EEB07154.1| prolyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 418

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 135/423 (31%), Positives = 216/423 (51%), Gaps = 38/423 (8%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L++  G + Q S G++  LPLG + +DN++ I+ +E    GAI +S+ +L +  +W +S 
Sbjct: 30  LLIDQGYVQQSSSGVFQLLPLGLRVMDNISNIVHQELAGLGAIRVSLASLSAKAVWQQSK 89

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R++  G EML + DR  +     PTHEE MT +  +   S + LP + YQI  K+RDE R
Sbjct: 90  RWEKMGSEMLHIRDRAQRDYCLCPTHEEEMTRMVANVFHSSKQLPISVYQIGSKYRDEAR 149

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R++EFLM D Y++D T E ++ +Y ++F S+ RIF  +GL      A+ G +GG
Sbjct: 150 PRGGLLRAKEFLMMDLYTYDATKEAAEKTYERVFQSFHRIFRAIGLPYTVAEAQQGTMGG 209

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             SHEF  L + GE  V      +                           +AA +D ++
Sbjct: 210 AYSHEFHYLNEVGEDVVLRCPQCL---------------------------HAANTDAYH 242

Query: 265 EKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             +   +    + +  + IEVGH F  G  Y+ P        D     + M SYGIG  R
Sbjct: 243 GSIDKCVHCGGELLQQKCIEVGHTFNLGQTYTRPFQLCLSNGDA----LYMNSYGIGISR 298

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
           ++AAV   +HD KG++WP ++AP+KI  I + A D    DA E +Y  L++     ++  
Sbjct: 299 LLAAVAHMTHDEKGLVWPTAIAPWKI--IILPASDSKIPDA-EALYDSLAQTFGANNILL 355

Query: 382 DDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           DD G +  G +   A+L+GFP  + VG  +  D   ++  R +  R  +   ++    S 
Sbjct: 356 DDRGHKSYGRKIRDAELIGFPFIITVGESYTRDGSFDVLARASNTRYKLKAAQLHTVVSG 415

Query: 441 RFS 443
            F+
Sbjct: 416 NFA 418


>gi|282899245|ref|ZP_06307218.1| Prolyl-tRNA synthetase [Cylindrospermopsis raciborskii CS-505]
 gi|281195881|gb|EFA70805.1| Prolyl-tRNA synthetase [Cylindrospermopsis raciborskii CS-505]
          Length = 603

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 116/229 (50%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  ++ I+REE
Sbjct: 1   MRLSQKLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKISQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAEECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQHLGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 GRDMIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D
Sbjct: 181 YQAYSNILRRCGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTQD 229



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 5/167 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIE GHIF  GTKYSL M AT+    G++  + MG YG+G  R+  + +E 
Sbjct: 427 PSQTLETARGIEAGHIFQLGTKYSLAMGATYTNEQGEEKPLVMGCYGVGVSRLAQSAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+DG GIIWP ++AP+   IS+ NIK   QV  +  EKIY  L+KVG +   DD  E+ G
Sbjct: 487 SYDGDGIIWPVAIAPYHAIISIPNIKDTHQV--EIAEKIYTELNKVGIETLLDDRNERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +F  ADL+G P +++ G + +S  KVE+  R T   +++++E +++
Sbjct: 545 VKFKDADLIGIPYRIVTG-RSISHGKVEVVTRATRESQEIAIENLVD 590


>gi|161344091|ref|YP_400976.2| prolyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|114152269|sp|Q31LT0|SYP_SYNE7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 600

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQETLLPQLQPAELWQESGRWETYTKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 121 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D
Sbjct: 181 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTED 229



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 89/146 (60%), Gaps = 5/146 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D  G
Sbjct: 432 SARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDKDG 491

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP++  ++  NI   +QV   A EKIYA L+  G +   DD  E+ G +F  A
Sbjct: 492 IIWPVAIAPYQAVVVIPNITDTEQVA--AAEKIYADLTAAGIETLLDDRDERAGVKFKDA 549

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           DL+G P +++ G + + + KVE+  R
Sbjct: 550 DLIGIPYRIVTG-RSLKEGKVEVVQR 574


>gi|186680962|ref|YP_001864158.1| prolyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|226701314|sp|B2J707|SYP_NOSP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|186463414|gb|ACC79215.1| prolyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 604

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 119/251 (47%), Positives = 156/251 (62%), Gaps = 12/251 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGLYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ADLW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPADLWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF       K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEASLKETYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD---------FM 228
           + +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D          +
Sbjct: 181 YKAYSNILRRSGLAFRAVEADSGAIGGSGSTEFMILAEAGEDEVLYTEDGKYAANVEKAV 240

Query: 229 DFPIPSENTDF 239
             PI +E + F
Sbjct: 241 SLPIDAETSRF 251



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 101/165 (61%), Gaps = 5/165 (3%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           PE    SARGIE GHIF  GTKYS  M AT+    G++  + MG +G+G  R+  A +E 
Sbjct: 427 PEQTLQSARGIEAGHIFQLGTKYSQAMGATYTNEQGEEKPLLMGCFGVGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++AP+   +++ NIK   QV  +  +K+Y  L++ G +   DD  E+ G
Sbjct: 487 SYDNDGIIWPVAIAPYHAIVTIPNIKDAQQV--EVAQKLYTELNQAGIETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +F  ADL+G P +++ G + +++ KVE+  R T   +++ ++EV
Sbjct: 545 VKFKDADLIGIPYRIVTG-RAIANGKVEVVERATRKSQEIVIDEV 588


>gi|89895282|ref|YP_518769.1| hypothetical protein DSY2536 [Desulfitobacterium hafniense Y51]
 gi|114152191|sp|Q24UG7|SYP_DESHY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89334730|dbj|BAE84325.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 575

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/227 (48%), Positives = 153/227 (67%), Gaps = 1/227 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH+L++R G+I + + GIY++LPLG + L  +  I+REE
Sbjct: 1   MRVSQILNPTLREVPAEAEVVSHQLLVRAGLIRKSAAGIYTYLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGR+D YG+E++RL DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDAKGGQEVLLPIIQPAELWRESGRWDLYGQELMRLNDRHNREFCLGPTHEEIITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EIRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLAESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL   P+ A+     G   +HEF+VLA++GE  V    D
Sbjct: 181 YTRIFTRCGLSFRPVEADAGAIGGTGGTHEFMVLAESGEAAVVYCPD 227



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 99/157 (63%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIEVG +F  GTKYS  ++A F   +G +H   MG YGIG  R +AA IE ++D  G
Sbjct: 404 EARGIEVGQVFKLGTKYSKALNAVFLDENGAEHPCVMGCYGIGVSRTMAAAIEQNNDKDG 463

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP  +AP+ + ++ +   D   R+  E +Y  L K+G +   DD  E+ G +F  ADL
Sbjct: 464 IIWPIPIAPYHVIVVPVNMKDDQVRETGEALYQELLKLGVEAVLDDRDERPGVKFKDADL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G+PL+V VGSK +++ +VE++ R TG  + + +EE+
Sbjct: 524 VGYPLRVTVGSKTLANGEVELRDRKTGEVQLVKVEEL 560


>gi|81169649|gb|ABB57989.1| prolyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 606

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 7   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 67  MDATGAQETLLPQLQPAELWQESGRWETYTKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 126

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 127 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 186

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D
Sbjct: 187 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTED 235



 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 89/146 (60%), Gaps = 5/146 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D  G
Sbjct: 438 SARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDKDG 497

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP++  ++  NI   +QV   A EKIYA L+  G +   DD  E+ G +F  A
Sbjct: 498 IIWPVAIAPYQAVVVIPNITDTEQVA--AAEKIYADLTAAGIETLLDDRDERAGVKFKDA 555

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           DL+G P +++ G + + + KVE+  R
Sbjct: 556 DLIGIPYRIVTG-RSLKEGKVEVVQR 580


>gi|325290366|ref|YP_004266547.1| Prolyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965767|gb|ADY56546.1| Prolyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 571

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 149/225 (66%), Gaps = 2/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AEI SH+LMLR G I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRVSQLLNPTLREVPAEAEIVSHQLMLRAGFIRKVAGGVYTYLPLALRVLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q ++LW E+ R+D YG EM RL DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNAKGGQELLLPIVQPSELWKETKRWDIYGPEMFRLKDRHDREFCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   E    SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDAEAGAESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQ-VFC 223
           Y +IF R GL   P+ A+     G   +HEF+VLAD+GE   VFC
Sbjct: 181 YTKIFSRCGLTFRPVEADAGAIGGTGGTHEFMVLADSGEAAVVFC 225



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 99/159 (62%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIEVG +F  GTKYS  + AT+    G++    MG YGIG  R +AA IE +HD  G
Sbjct: 404 EARGIEVGQVFNLGTKYSEALKATYLDEKGQEKLCYMGCYGIGVSRTMAAAIEQNHDTNG 463

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +IWP  +APF+  ++ +    +   +  EK+YA++ + G +V  DD  E+ G +F  ADL
Sbjct: 464 VIWPIPIAPFECIIVPVSLKSEAVVETSEKLYAQMLEAGIEVIIDDRDERPGVKFKDADL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G+PL++ +G K +++ KVE+  R TG  E + +E+V+ 
Sbjct: 524 IGYPLRINIGEKSLAEGKVELFRRKTGQMELLDIEQVMT 562


>gi|284051766|ref|ZP_06381976.1| prolyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 601

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + +  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEDSLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLYTPD 229



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 98/174 (56%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +E 
Sbjct: 428 PSQTLESARGIEVGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S++  GIIWP ++AP+ + +      D       +++Y++L++ G +   DD  E+ G +
Sbjct: 488 SYNKDGIIWPVAIAPYHVIITVPNVSDNQQMAIAQQLYSQLNQAGVETLLDDRNERAGVK 547

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S +
Sbjct: 548 FKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKISQS 600


>gi|209525764|ref|ZP_03274300.1| prolyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209493737|gb|EDZ94056.1| prolyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 601

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + +  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEDSLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLYTPD 229



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 98/174 (56%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIE+GHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +E 
Sbjct: 428 PSQTLESARGIEIGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+ + +      D       +++Y++L++ G +   DD  E+ G +
Sbjct: 488 SYDKDGIIWPVAIAPYHVIITVPNVSDNQQMAIAQQLYSQLNQAGVETLLDDRNERAGVK 547

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S +
Sbjct: 548 FKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKISQS 600


>gi|219669716|ref|YP_002460151.1| prolyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|254782897|sp|B8FR28|SYP_DESHD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219539976|gb|ACL21715.1| prolyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 575

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/227 (48%), Positives = 153/227 (67%), Gaps = 1/227 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH+L++R G+I + + GIY++LPLG + L  +  I+REE
Sbjct: 1   MRVSQILNPTLREVPAEAEVVSHQLLVRAGLIRKSAAGIYTYLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGR+D YG+E++RL DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDAKGGQEVLLPIIQPAELWRESGRWDLYGQELMRLNDRHNREFCLGPTHEEIITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EIRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLAESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL   P+ A+     G   +HEF+VLA++GE  V    D
Sbjct: 181 YTRIFTRCGLTFRPVEADAGAIGGTGGTHEFMVLAESGEAAVVYCPD 227



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 99/157 (63%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIEVG +F  GTKYS  ++A F   +G +H   MG YGIG  R +AA IE ++D  G
Sbjct: 404 EARGIEVGQVFKLGTKYSKALNAVFLDENGAEHPCVMGCYGIGVSRTMAAAIEQNNDKDG 463

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP  +AP+ + ++ +   D   R+  E +Y  L K+G +   DD  E+ G +F  ADL
Sbjct: 464 IIWPIPIAPYHVIVVPVNMKDDQVRETGEALYQELLKLGVEAVLDDRDERPGVKFKDADL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G+PL+V VGSK +++ +VE++ R TG  + + +EE+
Sbjct: 524 VGYPLRVTVGSKTLANGEVELRDRKTGEVQLVKVEEL 560


>gi|150019972|ref|YP_001305326.1| prolyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|166980168|sp|A6LJ40|SYP_THEM4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149792493|gb|ABR29941.1| prolyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 564

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 155/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+ENP DAEI S  L+ R G I + + G+Y++LPL ++ L  +  I+REE
Sbjct: 1   MRFSQLYAPTLRENPADAEIPSQALLQRAGFIRKIAAGVYTYLPLARRTLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW++SGR+D YG EM++L DR+++    GPTHEE++T++ ++
Sbjct: 61  MDRIGAQEILMPIIQPAELWIKSGRWDDYGPEMMKLKDRHNRDFTLGPTHEELVTELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQI  K+RDE+RPRFGV+R+REF+MKDAYSF  + E     Y K   +
Sbjct: 121 ELNSYKQLPVTLYQIANKYRDEIRPRFGVLRAREFIMKDAYSFHDSWESLDEVYKKFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RI  R+GL+   + A SG IGG  SHEF+  A+ GE+ + +C
Sbjct: 181 YSRILERIGLRYTVIEASSGAIGGKESHEFVAFAEYGESNILYC 224



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S RGIE+GHIF  GTKYS  M   +   DGK     MG YG G  R + A++E  HD  G
Sbjct: 400 SERGIELGHIFKLGTKYSETMDVKYMNKDGKMKPFIMGCYGWGISRTLGAIVEQLHDDNG 459

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAP+++ +  +   ++  +   EK+Y  L   G DV  DD     G +F  ADL
Sbjct: 460 IIWPVSVAPYEVVITVVGKENE--KSFAEKLYRYLLDKGVDVLIDDRDVSPGVKFKDADL 517

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFPL++ +G  +  D KVE+K R+  +    + EEVI
Sbjct: 518 IGFPLRITIGKSY-KDGKVELKERVGNVTIIEADEEVI 554


>gi|195440008|ref|XP_002067851.1| GK12501 [Drosophila willistoni]
 gi|194163936|gb|EDW78837.1| GK12501 [Drosophila willistoni]
          Length = 461

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 241/466 (51%), Gaps = 47/466 (10%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R SK F P+L + P+DA I        S KL+   G+I   S G Y  +P+ Q++LD   
Sbjct: 3   RASKIFWPMLVK-PKDAVIKQTEQLSRSQKLLTELGLIKSGSNGTYQIMPIAQRSLDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++++     G  ++++P L S  LW +SGR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQQNMVEAGGQKITLPVLTSTALWKKSGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FDL+ E +K +
Sbjct: 122 TAMLATAAPISYRQLPLRLYQIGPKFRDELKSRFGMMRAKEFLMKDMYTFDLSQETAKDT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R F +L +  + + AE+G +GG LSHE+  ++  GE          D  + 
Sbjct: 182 YDIITKAYDRFFQQLEVPFVKVNAETGIMGGSLSHEYHYISSVGE----------DTLVK 231

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            E+  F    + N+ V      +  +S+  N +  D+L +       G+EV H F  G K
Sbjct: 232 CESCGF----AGNAEV------FHQSSNCPNCQKADNLSQ-----VHGVEVAHTFLLGDK 276

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E     + + WP  +AP+ + +I 
Sbjct: 277 YSKPLGATFLNTSGKPQSLIMGCYGIGLSRVLAASLEVLSTDQELRWPKLLAPYDVCVIG 336

Query: 354 IK--AHDQVCRDACEKIYARLSKVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
            K  + +Q   +  E  Y  L  +G  C   +V  DD  +  IG +      LG P  ++
Sbjct: 337 PKQGSKEQTLAERVE--YNLLEHLGDICGSDEVLHDDRKDLTIGKRLLDGKRLGHPFIIV 394

Query: 406 VGSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            G+K V   D ++E+ H   G + +++L E +   +   S  + ++
Sbjct: 395 AGAKSVLPEDPRLEL-HSSDGNKMELNLNEALQMVNQYVSQKKHLI 439


>gi|224419073|ref|ZP_03657079.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313142583|ref|ZP_07804776.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313131614|gb|EFR49231.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 573

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 152/226 (67%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F+P  +E P+D  + SH+ +LR G I Q   GIY++LPLG+K LD ++ I++ +
Sbjct: 1   MRFSKFFIPTFKEVPKDVILKSHEYLLRGGFIQQIGSGIYNFLPLGKKVLDKISRIVKNK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRYD YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDEAGANEVLLGCVTPASLWQASGRYDRYGKELLRFKDRKENEFVFGPTHEETITELAKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 YIKSYKQLPLHFYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSNYEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF  LGL    + A+SG IGG  S EF+VLA++GE  + C  D
Sbjct: 181 YSAIFLELGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTI-CVCD 225



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG  R++AA+IE +HD KG+
Sbjct: 411 TKGIEVGHIFQLGEKYSQAMEATFLDEEGKAKPFVMGCYGIGISRLLAAIIEQNHDEKGM 470

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            W  + APF + ++  NIK  +Q   +  EKIY  LS  G +   DD  E+ G++ A  +
Sbjct: 471 KWTATTAPFLLDIVVSNIKDENQ--SELAEKIYHALSANGIECLLDDRKERYGAKMADFE 528

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P  +IVG K V + K+E+  R
Sbjct: 529 LIGIPYALIVG-KGVEEGKIELVCR 552


>gi|28212194|ref|NP_783138.1| prolyl-tRNA synthetase [Clostridium tetani E88]
 gi|81841121|sp|Q890M2|SYP_CLOTE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28204638|gb|AAO37075.1| prolyl-tRNA synthetase [Clostridium tetani E88]
          Length = 570

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/254 (46%), Positives = 159/254 (62%), Gaps = 6/254 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GM+ + + G+Y+++P G + +  +  I+REE
Sbjct: 1   MKLSNMLVSTLREVPAEAEIPSHKLMLRAGMMRKMASGVYNFMPFGLRVIKKIEDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E     L  ++LW ESGR+D +G EM RL DRN++    GPTHEEV TDI R+
Sbjct: 61  MDNAGAQEFLASALLPSELWKESGRWDVFGPEMFRLQDRNNREFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG+MRSREF+MKDAYSFD   E    SY KM+ +
Sbjct: 121 EINSYKQLPLNLYQIQTKYRDERRPRFGLMRSREFIMKDAYSFDKDYEDLDVSYKKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC-----SKDFMDFPIPS 234
           Y  IF R GL+   + A+SG +GG  S EF+V ++ GE ++ FC       +    P  S
Sbjct: 181 YHNIFIRCGLECNCVEADSGAMGGAGSAEFMVKSEVGEDEIAFCDSCGYGANIEKAPAIS 240

Query: 235 ENTDFDDIISLNSI 248
           E  D +++  L  I
Sbjct: 241 EKFDQEELKELAKI 254



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  GTKYS  M A F    G+   + MG YGIG  R +AA IE +HD  GI
Sbjct: 401 ARGIEVGHIFKLGTKYSESMGANFLDEKGESRPLVMGCYGIGVSRTMAAAIEQNHDENGI 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP S+AP+ + ++ +   D+    A E+IY +L  +G +V  DD  E+ G +F  ADL+
Sbjct: 461 VWPLSIAPYHVIVVPVITKDEEQMKAAEEIYNKLKSMGVEVLLDDRAERPGVKFKDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P++V VG K + + KVE K R     E +++E+V +     F 
Sbjct: 521 GIPIRVTVGKK-IKEGKVEYKLRKEEDLEILNIEQVYDKVREEFE 564


>gi|17232545|ref|NP_489093.1| prolyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|81852728|sp|Q8YM83|SYP_ANASP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|17134191|dbj|BAB76752.1| prolyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 604

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPSDAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEDSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + +Y  +  R GL   P+ A+SG IGG  S EF+VLA+ GE +V  + D
Sbjct: 181 YQAYSNMLRRAGLAFRPVEADSGAIGGSGSTEFMVLAEAGEDEVLYTDD 229



 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 100/161 (62%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVGHIF  GTKYS  + AT+    G++  + MG YG+G  R+  + +E S+D  G
Sbjct: 433 SARGIEVGHIFQLGTKYSQALGATYTNEQGEEKPLVMGCYGVGVSRLAQSAVEQSYDKDG 492

Query: 338 IIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+   +++ NI    QV  +  EK+Y  L++ G +   DD  E+ G +F  A
Sbjct: 493 IIWPVAIAPYHAIVTIPNINDAQQV--EIAEKLYTELNQSGVETLLDDRNERAGVKFKDA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DL+G P +++ G + +++ KVEI  R T   +++ ++EVI 
Sbjct: 551 DLIGIPYRIVTG-RAITNGKVEIVERATRQSQEIPIDEVIT 590


>gi|253828011|ref|ZP_04870896.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253511417|gb|EES90076.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 578

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 152/226 (67%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F+P  +E P+D  + SH+ +LR G I Q   GIY++LPLG+K LD ++ I++ +
Sbjct: 1   MRFSKFFIPTFKEVPKDVILKSHEYLLRGGFIQQIGSGIYNFLPLGKKVLDKISRIVKNK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRYD YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDEAGANEVLLGCVTPASLWQASGRYDRYGKELLRFKDRKENEFVFGPTHEETITELAKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 YIKSYKQLPLHFYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSNYEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF  LGL    + A+SG IGG  S EF+VLA++GE  + C  D
Sbjct: 181 YSAIFLELGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTI-CVCD 225



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG  R++AA+IE +HD KG+
Sbjct: 411 TKGIEVGHIFQLGEKYSQAMEATFLDEEGKAKPFVMGCYGIGISRLLAAIIEQNHDEKGM 470

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            W  + APF + ++  NIK  +Q   +  EKIY  LS  G +   DD  E+ G++ A  +
Sbjct: 471 KWTATTAPFLLDIVVSNIKDENQ--SELAEKIYHALSANGIECLLDDRKERYGAKMADFE 528

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P  +IVG K V + K+E+  R
Sbjct: 529 LIGIPYALIVG-KGVEEGKIELVCR 552


>gi|157127485|ref|XP_001655003.1| prolyl-tRNA synthetase [Aedes aegypti]
 gi|108872928|gb|EAT37153.1| prolyl-tRNA synthetase [Aedes aegypti]
          Length = 435

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 145/436 (33%), Positives = 223/436 (51%), Gaps = 54/436 (12%)

Query: 4   SKYFLP--ILQENP----RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDN-VNAI 56
           SK F P  I+ +N     +D    S +LML  G++ Q   G +  LPL Q+++   ++ +
Sbjct: 5   SKIFQPSLIIPKNAIVKNQDITSKSQRLMLEQGLMRQAGNGTFYILPLLQRSVQKAIDLV 64

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
               Q+  GA ++++P L SADLW +SGR ++ G E++   DR+ K  I GPTHEE +T 
Sbjct: 65  DHHMQHFAGAEKLTLPILTSADLWRKSGRLETAGGELMSTTDRHGKRQILGPTHEESITA 124

Query: 117 IFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +  +    SYR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+    ++ +Y 
Sbjct: 125 LLAAISPVSYRQFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVGLAEARQTYE 184

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +  +Y R+F  +G+  + +R ++G +GG  SHE+   ++ GE Q+ C            
Sbjct: 185 VVNEAYRRLFEAVGVPFVKVRGDTGVMGGSTSHEYHFPSEVGEDQLVCC----------- 233

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS------ARGIEVGHIFY 289
                 +  +                  N+++FD     +R +        GIEVGH F 
Sbjct: 234 -----SVCGMGC----------------NQEMFDGEKACERCNNSNIGRQAGIEVGHAFI 272

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              KYS  + A F   +GK   +QMG YGIG  R++AA +E     K I WP ++APFK+
Sbjct: 273 LEDKYSKALGAMFLNQNGKPEALQMGCYGIGITRLIAAGVEVLSSEKEIRWPRALAPFKV 332

Query: 350 SLINIKAHD------QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPL 402
            LI  K         +      E   ++LS VG +V  DD     IG +   A   G+P+
Sbjct: 333 CLIPPKKGSKEESLVEPWLHRLEDEVSKLSSVGSEVVVDDRTSLTIGKRLLDAKKTGYPV 392

Query: 403 QVIVGSKFVSDSKVEI 418
            V++G K  +D   E+
Sbjct: 393 VVVIGPK-AADEGAEL 407


>gi|257066241|ref|YP_003152497.1| prolyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798121|gb|ACV28776.1| prolyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 572

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 155/239 (64%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E+P DAE ASHK + R   I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MRLSKYYMPTLREDPVDAETASHKFLTRGAFIRKQASGVYSFLPLGKKVINKIEAIVREA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MENHDSIEVSTSILQAREIWEASGRWETFGPEMFKLKDRHDREYCLGPTAEEAFTALVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD   EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDADIEGLEISYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y+  F ++GL    +  +SG +GG  SHEFI L++TGE  +  + D  D+    E   F
Sbjct: 181 YVEAFDKMGLDYKIVEGDSGTMGGKKSHEFIALSETGEGVILYTDD-SDYAATDEKARF 238



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 96/160 (60%), Gaps = 5/160 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R V+A++E  HD KG
Sbjct: 402 AARGIEVGNIFQLGTKYSESLEAYFLDENGKQKPFIMGSYGIGISRSVSAIVEQYHDDKG 461

Query: 338 IIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           I+WP SVAPF+  +++INI   +Q  ++  EKIY RL +   DV  DD  E+ G +F   
Sbjct: 462 IVWPTSVAPFEAIVTIININKDEQ--KELGEKIYQRLREERIDVILDDRKERAGVKFNDR 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DL+G P ++ VG K  +D  VE   R     E +S  E I
Sbjct: 520 DLIGIPYRITVG-KDAADDIVEYSTRKDMENEKISSSEAI 558


>gi|255322659|ref|ZP_05363803.1| prolyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255300220|gb|EET79493.1| prolyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 570

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 151/239 (63%), Gaps = 10/239 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  +E P+DA +ASHK +LR G   Q   G+Y++LPLG++ L+N+  I++EE
Sbjct: 1   MKFSKLYAPTAKEAPKDASLASHKFLLRAGYAEQVGSGLYNFLPLGKRVLENIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S+  + SADLW ESGR+D YGKE+LR  DR +   +  PT+EE +  + R 
Sbjct: 61  LDEAGAQEISMSFVTSADLWRESGRFDVYGKELLRFKDRKENDFVLSPTNEESVVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E     ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFLMKDGYSFHANAEDLDREFDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y +IF RLGL    +RA+SG IGG  S EF+VLA++GE  +          I  EN D+
Sbjct: 181 YSKIFTRLGLNFRAVRADSGAIGGSGSKEFMVLANSGEDDI----------IVCENCDY 229



 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIEVGHIF  GTKYS PM ATF   +GK     MG YGIG  R+VA  +E+SHD KGI
Sbjct: 409 SKGIEVGHIFKLGTKYSEPMGATFLDENGKAKPFIMGCYGIGVSRLVAVAVEASHDEKGI 468

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IW +++APFK  +I     D+      + +Y  L   G  V  DD  E+ G + +  +L+
Sbjct: 469 IWNETLAPFKFEIIVSNLKDEEGVKFAQGLYEDLRGAGVSVLLDDRNERFGVKMSEFELM 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           GFP  VIVG K +++  VE+  R    +E +   E++
Sbjct: 529 GFPYAVIVG-KGLAEGTVELVTRDGLAKETVKASEIL 564


>gi|223040968|ref|ZP_03611229.1| prolyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222877765|gb|EEF12885.1| prolyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 570

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 151/239 (63%), Gaps = 10/239 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  +E P+DA +ASHK +LR G   Q   G+Y++LPLG++ L+N+  I++EE
Sbjct: 1   MKFSKLYAPTAKEAPKDASLASHKFLLRAGYAEQVGSGLYNFLPLGKRVLENIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S+  + SADLW ESGR+D YGKE+LR  DR +   +  PT+EE +  + R 
Sbjct: 61  LDEAGAQEISMSFVTSADLWRESGRFDVYGKELLRFKDRKENDFVLSPTNEESVVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E     ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFLMKDGYSFHANAEDLDREFDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y +IF RLGL    +RA+SG IGG  S EF+VLA++GE  +          I  EN D+
Sbjct: 181 YSKIFTRLGLNFRAVRADSGAIGGSGSKEFMVLANSGEDDI----------IVCENCDY 229



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 124/240 (51%), Gaps = 19/240 (7%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
            GP+G      +I     GE+Q+ C  +  D+     +     + S NS  E++      
Sbjct: 341 CGPVGLKGVEFYIDKELEGESQMICGANERDYHFVGVS-----VSSFNS--ERF------ 387

Query: 259 TSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             D+   K  D  P    N  VS +GIEVGHIF  GTKYS PM+ATF   +GK     MG
Sbjct: 388 -KDLTAVKAGDKCPCCGGNLSVS-KGIEVGHIFKLGTKYSEPMNATFLDENGKAKPFIMG 445

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+VA  +E+ HD KGIIW ++++PFK  +I     D+      + +Y  L + 
Sbjct: 446 CYGIGVSRLVAVAVEAKHDEKGIIWNETLSPFKFEIIISNLKDEEGVKFAQGLYEDLREA 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD  E+ G + +  +L+GFP  VIVG K +++  VE+  R   ++E +   E++
Sbjct: 506 GVSVLLDDRNERFGVKMSEFELMGFPYAVIVG-KGLAEGTVELVTRGGLVKETVKASEIL 564


>gi|195125579|ref|XP_002007255.1| GI12837 [Drosophila mojavensis]
 gi|193918864|gb|EDW17731.1| GI12837 [Drosophila mojavensis]
          Length = 460

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 231/459 (50%), Gaps = 49/459 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+ALD   
Sbjct: 3   KASRLFCPALI-IPKNAVVKQTEQLSVSQKLLTELGLVKSGSNGTYQIMPIAQRALDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQRNMQEAGGQKISLPVLTPTQLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAI 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTAPISYRQLPLLLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSKEKAELT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R F +L +  + + A +G +GG LSHE+  ++  GE               
Sbjct: 182 YATVSEAYERFFRQLEVPFVKVEAATGIMGGSLSHEYHYISPVGE--------------- 226

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYF 290
                 D +++ +S        YA  ++V  E    + P  +       RG+EV H F  
Sbjct: 227 ------DTLLNCSS------CGYAGNAEVFGEDATSTCPNCQSTQLNRVRGVEVAHTFLL 274

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS P+ AT+    GK   + MG YGIG  R++AA +E       + WP  +AP+ + 
Sbjct: 275 GDKYSKPLGATYLNTSGKPETLVMGCYGIGITRIIAAALEVLSTEHELRWPTLLAPYDVC 334

Query: 351 LINIK--AHDQVCRDACEK-IYARLSKVGC---DVFWDDMGE-QIGSQFAVADLLGFPLQ 403
           LI  K  + +QV  +  E  +  +L++V C    +  DD  E  IG +   A  LG PL 
Sbjct: 335 LIGPKQGSKEQVSGERIESDLLQQLTQV-CGAEQLLHDDRKELTIGKRLMEAKRLGHPLT 393

Query: 404 VIVGSKFVSDSKVEIKHRLTGIRE-DMSLEEVIN-YASH 440
           V+VG+K       +++   +G    ++++ EV+   ASH
Sbjct: 394 VVVGAKATQGEAPKLELHASGAETVELNITEVLERVASH 432


>gi|298489744|ref|YP_003719921.1| prolyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298231662|gb|ADI62798.1| prolyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 597

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S      L+++P DAEI SH+L+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSNKLFVTLRDDPGDAEIPSHQLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW +SGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNATGAEECLLPQLQPAELWKDSGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MRSREF+MKD YSF    E  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHTDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + +Y  +  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D
Sbjct: 181 YQAYSNMLRRAGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTED 229



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 5/167 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIEVGHIF  GTKYS  M AT+    G+   + MG YG+G  R+  + +E 
Sbjct: 427 PSQTLKTARGIEVGHIFQLGTKYSEAMGATYINEQGEKKPLIMGCYGVGVSRLAQSAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++AP+   I++ NIK   Q+  +  EK+Y  L+K G +   DD  E+ G
Sbjct: 487 SYDKDGIIWPVAIAPYHSIITIPNIKDAQQI--EVAEKLYTELNKAGVETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +F  ADL+G P +++ G + +++ KVE+  R     + +++EEV+N
Sbjct: 545 VKFKDADLIGIPFRIVTG-RAIANGKVEVVKRANRESQQIAIEEVVN 590


>gi|21672515|ref|NP_660582.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009415|sp|Q8K9S2|SYP_BUCAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21623136|gb|AAM67793.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 571

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P  A+I SH+LML++GMI + S GIY WLP G + L+ +  II+ E
Sbjct: 1   MRASKYLFSTLKETPHHAKIISHQLMLKSGMIRKLSSGIYIWLPTGIRVLNKIKDIIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW  SGR   YG+E+ +  DR ++  I GPT+EEV+T+  R+
Sbjct: 61  MRKINALEVLMPVVQPKKLWENSGRLSIYGEELFQFYDRRNQKFILGPTNEEVVTNFIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S++ LP   YQIQ KFRDE+RPRFG++RSREF+MKDAYSF +     + +YN  + S
Sbjct: 121 EINSFKELPLIIYQIQTKFRDEIRPRFGIVRSREFIMKDAYSFHINKHCLEKTYNDFYQS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y+ IF+++ ++   + A+SG +GG +SHEF  L++ GE ++  SK+
Sbjct: 181 YINIFNKIKIQFRAVNADSGSMGGSISHEFQALSENGEDEIVFSKN 226



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + IE+GHIF  G +YS  M+   +       ++ MG YGIG  R+VA+VIE ++D  GII
Sbjct: 405 KSIEIGHIFQLGKEYSKKMNVLVQEQHNNYKHIHMGCYGIGITRIVASVIEQNYDDNGII 464

Query: 340 WPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPDS+APF++ ++ +   + +  ++  E +Y  L K   DV   D  E+ G  F   DL+
Sbjct: 465 WPDSIAPFQVVILPLNTKNCIKIKEITENLYKILKKEKIDVILYDRNERPGIMFNQIDLI 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P Q+I+  + ++++KVE + R       + ++E+  +   + +
Sbjct: 525 GIPHQIIISPRHINENKVEYRERKNNKSTLIKVKEITYFLKKKLN 569


>gi|307154337|ref|YP_003889721.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306984565|gb|ADN16446.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 600

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/229 (50%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIKSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNAIGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALGDRQERELGLGPTHEEVITFI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AREMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTDETSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  +F R GL    + A+SG IGG  S EF+VLAD GE +V  + D
Sbjct: 181 DQAYRNMFRRCGLAFRGVEADSGAIGGSGSQEFMVLADAGEDEVLYTAD 229



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  A +E 
Sbjct: 427 PTQTLQSARGIEVGHIFQLGTKYSQAMGATYTNEQGEEIPLVMGCYGMGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+   ++    +D +  +  EK+Y  L++VG +   DD   + G +
Sbjct: 487 SYDKDGIIWPVAIAPYHAIVVIPDLNDPLQVETAEKLYQELNQVGVETLLDDRDARAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           F  ++L+G P +++ G + + D KVE+  R +   +D+++EEV++
Sbjct: 547 FKDSELIGIPYRIVTG-RSLKDGKVEVVERASKKSQDIAIEEVVS 590


>gi|219681610|ref|YP_002467996.1| prolyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682167|ref|YP_002468551.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471296|ref|ZP_05635295.1| prolyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254782890|sp|B8D937|SYP_BUCA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782891|sp|B8D7E1|SYP_BUCAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219621900|gb|ACL30056.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624453|gb|ACL30608.1| prolyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311086555|gb|ADP66636.1| prolyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087136|gb|ADP67216.1| prolyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087672|gb|ADP67751.1| prolyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 572

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 149/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y L   ++ P DA+I SH+LM+R+GMI + S G+Y WLP G + L  +  II  E
Sbjct: 1   MLTSQYLLSTSKDIPYDAKIISHQLMIRSGMIRKTSSGLYVWLPTGMRVLKKIKNIITTE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW ESGR + YG+E+LR  DR     I GPT+EEV+T+   S
Sbjct: 61  MEKINALEILMPIIQPEYLWKESGRLNLYGEELLRFLDRRKNQFILGPTNEEVVTNFIGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFG++R+REF MKDAYSF +     +++YNK + S
Sbjct: 121 EIHSYKQLPLTVYQIQTKFRDEIRPRFGIIRTREFTMKDAYSFHINQSCLENTYNKFYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y+ IF ++ L    ++A+SG +GG++SHEF   +  GE ++  S D
Sbjct: 181 YINIFKKMNLNFCAVKADSGSMGGNISHEFQAFSQNGEDEIVFSND 226



 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + IE+GHIF  G KYS  +  + K  +G    + MG YGIG  R+ AAVIE  HD  GII
Sbjct: 407 QSIEIGHIFQLGQKYSRKIQQSVKIKNGNLKNLYMGCYGIGITRIAAAVIEQHHDKNGII 466

Query: 340 WPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WPDS+APF++ +  IN+K  +++ +     +Y +  K G DV  DD  E+ G  F   DL
Sbjct: 467 WPDSIAPFEVVILPINMKKDNKI-KIIAHFLYKKFKKTGIDVILDDRDERPGVMFNEVDL 525

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P Q+I+  + ++   VE + R       ++++++ N+   + 
Sbjct: 526 IGIPHQIIISKRSINYDNVEYRERKNKENILINIKDIKNFIIQKL 570


>gi|332705120|ref|ZP_08425202.1| prolyl-tRNA synthetase, family II [Lyngbya majuscula 3L]
 gi|332356070|gb|EGJ35528.1| prolyl-tRNA synthetase, family II [Lyngbya majuscula 3L]
          Length = 603

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+E+P +AEI SHKL+LR G I +   GIY++LP+  + L  V+ I+REE
Sbjct: 1   MRLSQMLLVTLREDPVEAEIPSHKLLLRAGYIRRIGSGIYAYLPMMWRVLKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALIDRQKRELGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTDHESLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  +F R GL+   + A+SG IGG  S EF+VLAD GE ++  ++D
Sbjct: 181 DQAYRNMFSRSGLEFRAVEADSGAIGGSGSQEFMVLADAGEDEILYTED 229



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 1/164 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  A +E 
Sbjct: 427 PNQTLKSARGIEVGHIFQLGTKYSSAMGATYTSEQGEEIPLCMGCYGVGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+ + +      D     A EK+Y +L++ G +   DD  E+ G +
Sbjct: 487 SYDKDGIIWPVAIAPYHVIITIPNVGDTQQMAAAEKLYTQLNEAGIETLLDDRNERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           F  ADL+G P +++ G + + D KVE+  R T    ++SLEEV+
Sbjct: 547 FKDADLIGIPYRIVTG-RSLKDGKVEVVERATHKSTELSLEEVL 589


>gi|256847045|ref|ZP_05552491.1| prolyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715709|gb|EEU30684.1| prolyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 577

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 112/228 (49%), Positives = 146/228 (64%), Gaps = 1/228 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V AIIREE
Sbjct: 1   MKQSKILIPTKKEAPSDAEALSHKMMIRAGYIYQVSSGVWSYLPLAYRVIRKVKAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EM  P++  ADLW ++GRY++YG  + +  DRND+  I GPT EEVMT+I R 
Sbjct: 61  MEKADAFEMETPSMLPADLWQQTGRYEAYGDTLFKFKDRNDREHILGPTDEEVMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQI  KFRDE RPRFGV+R +EF M D YSF     G   +YN+   +
Sbjct: 121 SIKSYKKLPLTVYQITDKFRDEPRPRFGVLRGKEFSMLDGYSFAADQAGLDEAYNQQAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDF 227
           Y  IF R+GL    + A+SG IGGD S EF   A  GE T V+   D+
Sbjct: 181 YRNIFDRIGLDYKIILADSGTIGGDNSQEFSAPAKVGEDTIVYTDGDY 228



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT YS  + A     +G+   + MG YGIG  R+++AV E + D  G++W
Sbjct: 408 GIEIGHIFKLGTGYSEKLGAQVLDQNGRLVDMIMGCYGIGVTRLLSAVAEQNADEYGLVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PDS+APF + +I + A          +I  +L K G +V  DD  E+ G +FA +DL+G 
Sbjct: 468 PDSIAPFDVHVIPVNAKKADQMKMANEISEQLEKAGLEVLVDDRKERAGVKFADSDLIGI 527

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           PL+V VG K  S+  VEIK R TG   ++  EEV N
Sbjct: 528 PLRVTVGKK-ASEGIVEIKIRKTGETVEVKTEEVAN 562


>gi|237751610|ref|ZP_04582090.1| prolyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229372976|gb|EEO23367.1| prolyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 575

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 151/226 (66%), Gaps = 2/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F P L+E P+DA + SH  +LR G IHQ   GIY++LPL Q  +D +  I+REE
Sbjct: 1   MRFSTFFAPTLKEAPKDAVLKSHIYLLRAGYIHQIGSGIYNFLPLAQIVMDKIKTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+++  L    LW +SGRY+ Y  E+    D+   + + GPTHEE +T+I ++
Sbjct: 61  MNRAGANEITMGFLTPTSLWEQSGRYEKYS-ELALFTDKKGASFVLGPTHEECVTEIAKT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP   YQI LKFRDELRPRFG++R+REF+MKDAYSF  + E     +  M  +
Sbjct: 120 YIKSYKQLPLNLYQIHLKFRDELRPRFGLLRAREFVMKDAYSFHDSLESLNKEFINMRDT 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y+RIF RLGL    + A+SG IGG  S EF+VLA+ GE T V C+K
Sbjct: 180 YVRIFSRLGLDFRIVEADSGAIGGSGSREFMVLAECGEDTIVTCAK 225



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 95/159 (59%), Gaps = 6/159 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIEVGHIF    KYS PM A F  ++G      MG YG+G  R+++A++E   D KG 
Sbjct: 414 SKGIEVGHIFKLEDKYSKPMQANFLLSNGSSMPFTMGCYGLGVSRLISAILEQKADEKGC 473

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W  +VAPFK+ +I  N+K  ++V       +Y +L + G +V  DD  E+ GS+ A  +
Sbjct: 474 VW-GAVAPFKLDIIISNMKNEEEVL--FATNLYTQLQEKGIEVILDDRNERFGSKIADFE 530

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+GF   +IVG + ++++K+E+  R   IR + S   ++
Sbjct: 531 LIGFEYALIVGKR-LAENKLELIKRDGLIRTEYSSANIL 568


>gi|75908528|ref|YP_322824.1| prolyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|114152169|sp|Q3MAQ7|SYP_ANAVT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|75702253|gb|ABA21929.1| Prolyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 604

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEDSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + +Y  +  R GL   P+ A+SG IGG  S EF+VLA+ GE +V  + D
Sbjct: 181 YQAYSNMLRRAGLAFRPVEADSGAIGGSGSTEFMVLAEAGEDEVLYTDD 229



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVGHIF  GTKYS  + AT+    G++  + MG YG+G  R+  + +E S+D  G
Sbjct: 433 SARGIEVGHIFQLGTKYSQALGATYTNEQGEEKPLVMGCYGVGVSRLAQSAVEQSYDKDG 492

Query: 338 IIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+   +++ NI    QV  +  E++Y  L++ G +   DD  E+ G +F  A
Sbjct: 493 IIWPVAIAPYHAIVTIPNINDAQQV--EIAERLYTELNQSGVETLLDDRNERAGVKFKDA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DL+G P +++ G + +++ KVEI  R T   +++ ++EVI 
Sbjct: 551 DLIGIPYRIVTG-RAITNGKVEIVERATRQSQEIPIDEVIT 590


>gi|257060371|ref|YP_003138259.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256590537|gb|ACV01424.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 598

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ A+LW ESGR+++Y K    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPAELWRESGRWETYTKAEGIMFSLIDRRDTELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + +  K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHASEDSLKETYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  +  R GL+   ++A+SG IGG  S EF++LA+ GE +V  ++D
Sbjct: 181 DQAYRNMITRCGLEFRAVQADSGAIGGSASQEFMILAEAGEDEVLYTED 229



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEVGHIF  G KYS  M ATF    G++  + MG YG+G  R+  A +E S+D  G
Sbjct: 433 TARGIEVGHIFQLGVKYSQAMGATFTNEQGEEKPLIMGCYGVGVSRLAQAAVEQSYDKDG 492

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP ++AP+   ++    +D    +  EK+Y  L+KVG +   DD  E+ G +F  A+L
Sbjct: 493 IIWPVAIAPYHAVVVIPNINDAQQVEVAEKLYTELNKVGVETLLDDRDERAGVKFKDAEL 552

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G P +++ G    S  KVE+  R T   +++++++V+
Sbjct: 553 IGIPYRIVTGRSLQS-GKVELVERSTKNSQEIAIDQVV 589


>gi|158291808|ref|XP_313346.3| AGAP003589-PA [Anopheles gambiae str. PEST]
 gi|157017465|gb|EAA08954.3| AGAP003589-PA [Anopheles gambiae str. PEST]
          Length = 461

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 146/446 (32%), Positives = 220/446 (49%), Gaps = 63/446 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASH-------KLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R SK F P L   P++A I S        +LML  G+I Q   G +  LPL Q++L    
Sbjct: 3   RVSKLFQPALI-IPKNATIKSQDITSKSQRLMLEQGLIRQAGNGTFYLLPLLQRSLQKAV 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYD----SYGKEMLRLADRNDKAMIYGPTH 110
            +I       GA +M +P L SA+LW +SGR          E+L+  DR+ K  I GPTH
Sbjct: 62  DLIDRHMEAVGAQKMVLPLLTSAELWKKSGRLSVTEAGTPTELLQTTDRHGKVQILGPTH 121

Query: 111 EEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           EE +T +  +    +YR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+   G
Sbjct: 122 EESITSLLAAIAPVTYRQFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVDRAG 181

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFM 228
            + +Y+ +  +Y R+F  +G+  + +  + G +GG LSHE+   ++ GE ++  C++  M
Sbjct: 182 CQETYDSVNEAYGRLFREIGVPFVKVAGDCGTMGGSLSHEYHFPSEVGEDELIRCTRCGM 241

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR-------- 280
                                              N +LF +L E  +            
Sbjct: 242 H---------------------------------TNAELFPALSERCKSCETGSDTFERQ 268

Query: 281 -GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
            GIEV H F    +Y+  + AT   A+GK   +QMG YGIG  R++AA IE     K I 
Sbjct: 269 AGIEVAHAFILEDRYTKALGATCLAANGKPVPLQMGCYGIGVTRLLAASIEVLSSEKEIR 328

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKI------YARLSKVGCDVFWDDMGE-QIGSQF 392
           WP ++AP+++ +I  KA  +    A   +         L+    DV  DD  +  IG + 
Sbjct: 329 WPVALAPYRVCIITPKAGSKEEAQATPWVGKLHDDLQSLANCAGDVIVDDRTQLTIGKRL 388

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEI 418
                +G+P+ V+VG+K  S+ K+E+
Sbjct: 389 LDTRKMGYPVIVVVGAKAASEKKLEL 414


>gi|302411110|ref|XP_003003388.1| prolyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261357293|gb|EEY19721.1| prolyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 474

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 133/432 (30%), Positives = 217/432 (50%), Gaps = 33/432 (7%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +H  ++R G++ Q   GI+  LP+G +    + ++I +     GA  +++ ++ S  LW 
Sbjct: 56  AHDKLIRAGLLRQSHSGIFHLLPMGYRIQSKLESLIDKYMQSLGASRVALSSITSKKLWQ 115

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +SGRY+  G E+    DR     +  PTHEE +T +    +KSY+ LP   YQ   K+RD
Sbjct: 116 QSGRYEKLGSELFNFQDRRGADYMLAPTHEEEVTSLVAQSVKSYKELPLRLYQTTRKYRD 175

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           ELRPR G++R+REF MKD Y+FD+    +  +Y ++  +Y   F  LGL  +  RA SG 
Sbjct: 176 ELRPRHGLLRTREFTMKDLYTFDVDTSAAIQTYEQVQGAYASFFGSLGLPVVKARAGSGD 235

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +GGDLSHE+   +  GE          D  +   N +F    ++NS + +  A  +A   
Sbjct: 236 MGGDLSHEYHFTSPIGE----------DLIMKCNNCEF----AVNSDIAEQPANDSAMDA 281

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA------TFKG--------ADG 307
            H  K      E K      +EVGH F+ GT+YS P+ A      T +G        A  
Sbjct: 282 QHCPKCEAGTLEVKEA----LEVGHTFHLGTRYSEPLGARIALPTTSQGDSQSADTSAAR 337

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
              ++QMG +GIG  R++ AV E   D  G+ WP +++P+++ ++     +       + 
Sbjct: 338 ASTHIQMGCHGIGVSRLIGAVAEHFADPVGLQWPRAISPYEVEIVFADGLEAQAVQIYDD 397

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   LS    DV  DD    +  +   ADL G+P+ V++G  +     +E++ R  GI+E
Sbjct: 398 VVHGLSHT-TDVLLDDRPVSLPWKLKDADLTGYPIVVVLGQVWKKTGNIELQCRRLGIKE 456

Query: 428 DMSLEEVINYAS 439
            +   +++   S
Sbjct: 457 TVQPSDILQRIS 468


>gi|218248302|ref|YP_002373673.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|226699137|sp|B7K1H5|SYP_CYAP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218168780|gb|ACK67517.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 598

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ A+LW ESGR+++Y K    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPAELWRESGRWETYTKAEGIMFSLIDRRDTELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + +  K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHASEDSLKETYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  +  R GL+   ++A+SG IGG  S EF++LA+ GE +V  ++D
Sbjct: 181 DQAYRNMITRCGLEFRAVQADSGAIGGSASQEFMILAEAGEDEVLYTED 229



 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEVGHIF  G KYS  M ATF    G++  + MG YG+G  R+  A +E S+D  G
Sbjct: 433 TARGIEVGHIFQLGVKYSQAMGATFTNEQGEEKPLIMGCYGVGVSRLAQAAVEQSYDKDG 492

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP ++AP+   ++    +D    +  EK+Y  L+KVG +   DD  E+ G +F  A+L
Sbjct: 493 IIWPVAIAPYHAVVVIPNINDAQQVEVAEKLYTELNKVGVETLLDDRDERAGVKFKDAEL 552

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G P +++ G    S  KVE+  R T   +++++++V+
Sbjct: 553 IGIPYRIVTGRSLQS-GKVELVERSTKNSQEIAIDQVV 589


>gi|113475053|ref|YP_721114.1| prolyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|123161090|sp|Q116D3|SYP_TRIEI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110166101|gb|ABG50641.1| prolyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 601

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 115/252 (45%), Positives = 159/252 (63%), Gaps = 12/252 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL++R G I +   GIY++LPL  + ++ V+ I+REE
Sbjct: 1   MRLSQMLLVTLRDDPAEAEIPSHKLLIRAGYIRRIGNGIYAYLPLMLRVINKVSTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPAELWQESGRWDTYTQAEGIMFSLIDRQNRELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 AKDIIRSYRQLPIHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHADEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD---------FM 228
             +Y  +  R GL+   + A+SG IGG  S EF+VLAD GE ++  ++D          +
Sbjct: 181 DKAYRNMLRRSGLQFRAVDADSGAIGGSASQEFMVLADAGEDEILYTQDGKYAANMEKAI 240

Query: 229 DFPIPSENTDFD 240
             P+  E + FD
Sbjct: 241 SLPVDVEASPFD 252



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 5/167 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  A +E 
Sbjct: 427 PSKTLETARGIEVGHIFQLGTKYSEAMGATYTNEQGQEVPLLMGCYGVGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++AP+   I + NIK   Q+  +    +Y  L++ G D   DD  E+ G
Sbjct: 487 SYDKDGIIWPVAIAPYHVVICIPNIKDTQQI--EVAGNLYKELNEAGIDTILDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +F  ADL+G P +++ G    S  KVE+  R T   +++ + +V++
Sbjct: 545 VKFKDADLIGIPYRIVTGRSLKS-GKVELIERSTHQCQEIVVAQVLS 590


>gi|195375658|ref|XP_002046617.1| GJ12980 [Drosophila virilis]
 gi|194153775|gb|EDW68959.1| GJ12980 [Drosophila virilis]
          Length = 464

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 232/455 (50%), Gaps = 39/455 (8%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P+L   P++A +        S KL++  G+I   S G Y  +P+ Q+ +D   
Sbjct: 3   KASRLFWPVLI-TPKNAVVKQTEQLSRSQKLLMELGLIKSGSNGTYQIMPIAQRVVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           ++++      G  ++S+P L  A LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  SLVQRNMQEAGGQKISLPVLTPAQLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATAAPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSKEAAECT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R F +L +  + + A +G +GG LSHE+  ++  GE               
Sbjct: 182 YATVSDAYERFFRQLEVPFVKVEAATGIMGGSLSHEYHYISPVGE--------------- 226

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                 D +++ ++      A     SD        S    +    RG+EV H F  G K
Sbjct: 227 ------DTLLNCSACGYAGNAEVLG-SDAETASTCPSCQSTQLSRVRGVEVAHTFLLGDK 279

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   +QMG YG+G  RV+AA +E     + + WP  +AP+ + LI 
Sbjct: 280 YSKPLGATFLNKSGKPETLQMGCYGVGITRVIAAALEVLSTEQELRWPKLLAPYDVCLIG 339

Query: 354 IK--AHDQVCRDACE-KIYARLSKV-GCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVG 407
            K  + +Q   +  E ++  +L+++ G +    D  ++  IG +   A  LG PL ++VG
Sbjct: 340 PKQGSKEQAPVERLENELLQQLTQICGAEQLLHDERKELTIGKRLLDAKRLGHPLTIVVG 399

Query: 408 SKFVSDSKVEIKHRLTGIRE-DMSLEEVIN-YASH 440
           +K       +++   +G  + ++S  EV+   A+H
Sbjct: 400 AKAAQQEAPQLELHASGAEKMELSAAEVLRVVATH 434


>gi|170078264|ref|YP_001734902.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|226701348|sp|B1XP53|SYP_SYNP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169885933|gb|ACA99646.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 601

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P DAEI SHKL+LR G I +  +GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQSLFVTLREDPADAEIPSHKLLLRAGYIRRIGRGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A++W ESGR+D+Y +    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNATGAQETLLPQLQPAEIWQESGRWDTYTQAEGIMFSLRDRLDGELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPQHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHASEECLKKTYADM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  +  R GL+   + A+SG IGG  S EF++LAD GE ++  ++D
Sbjct: 181 DQAYRNMLRRCGLQFRAVEADSGAIGGSGSQEFMILADAGEDEILYTED 229



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 5/160 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIE GHIF  GTKYS  M ATF   +GK+H + MG YG+G  R+  A +E S+D  G
Sbjct: 433 TARGIEAGHIFQLGTKYSEAMGATFTDENGKEHPLVMGCYGVGVSRLAQAAVEQSYDENG 492

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+   ++  N+K+ +Q+   A EK+YA L+  G +   DD  E+ G +F  A
Sbjct: 493 IIWPVAIAPYHAVVVVPNVKSEEQMA--AAEKLYADLNAAGVETILDDRNERAGVKFKDA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +L+G P +V+ G K + D KVE+  R  G R+D+ L+ V+
Sbjct: 551 ELIGIPFRVVTG-KSLKDGKVEVVRRKEGDRQDLDLDAVV 589


>gi|119511594|ref|ZP_01630701.1| prolyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119463755|gb|EAW44685.1| prolyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 602

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 149/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N T A E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNATNAQECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +     K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEVSLKETYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + +Y  +  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D
Sbjct: 181 YQAYSNMLRRSGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTED 229



 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 108/167 (64%), Gaps = 5/167 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           PE    +ARGIEVGHIF  GTKYS  MSAT+    G+++ + MG YG+G  R+  + +E 
Sbjct: 427 PEQTLQTARGIEVGHIFQLGTKYSQAMSATYTNEQGEENPLFMGCYGVGVSRLAQSAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++AP+   +++ NIK   QV  +  +K+Y +L+K G +   DD  E+ G
Sbjct: 487 SYDKDGIIWPVAIAPYHAIVTIPNIKDAQQV--EIAQKLYTQLNKAGVETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +F  ADL+G P +++ G + +++ KVE+  R T   +++++EEV+N
Sbjct: 545 VKFKDADLIGIPYRIVTG-RAINNGKVEVVKRATRETQEIAIEEVVN 590


>gi|71892071|ref|YP_277801.1| prolyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|114152172|sp|Q493B4|SYP_BLOPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71796177|gb|AAZ40928.1| prolyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 581

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 149/221 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P++ +  SH+LMLR G+I Q S G+Y+WLP G + L  +  IIREE
Sbjct: 1   MRTSQYLLATLKEAPKNCKAISHQLMLRAGLIRQVSSGLYTWLPTGLRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIE+++P +Q A LW +SGR+  YG E+LR  +RN++  + GPTHEE++++I   
Sbjct: 61  MSKIGAIEIAMPIVQPARLWKKSGRWTGYGTELLRFKNRNNQEFVLGPTHEEMVSEIICK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
               Y+  P   YQI  K+RDE RPR GV+R+REF+MKD YSF +  +  +++YN M+ +
Sbjct: 121 ETMLYKQFPLIVYQIHTKYRDEARPRSGVIRAREFIMKDGYSFHINQKSLQNTYNNMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF+R+GL    ++AE G IGG LSHEF   ++ GE  +
Sbjct: 181 YHTIFNRIGLNFCVVQAEPGKIGGALSHEFQAYSENGEDSI 221



 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 110/188 (58%), Gaps = 6/188 (3%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKY-SLPMSATFKGADGKDHY- 311
           ++  +D+H     +S    K + +    IE+GHIF  G KY +L  + + K  + K +  
Sbjct: 386 FSKVADLHEVLHHNSYTNKKNILSIHNCIEIGHIFQLGQKYLNLHTNYSQKNNEHKHNLS 445

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYA 370
           ++MG YGIG  R++A +IE ++D  GI+WPD +APFK+++I I  +  V  R+  EKIY 
Sbjct: 446 MEMGCYGIGITRIIAVIIEQNYDKNGILWPDVIAPFKLAIIPIDMYRSVNVRNIAEKIYT 505

Query: 371 R-LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           + LS +G D+  DD  E  G+ FA  DL+G P  +I+  + +++ +VE K+R     E +
Sbjct: 506 QLLSVIGIDILIDDRKEYPGTMFADIDLIGIPHILIISDRSLANQEVEYKYRKKNKIEKI 565

Query: 430 SLEEVINY 437
            LE +I Y
Sbjct: 566 KLEMLIRY 573


>gi|194749304|ref|XP_001957079.1| GF10245 [Drosophila ananassae]
 gi|190624361|gb|EDV39885.1| GF10245 [Drosophila ananassae]
          Length = 458

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 233/465 (50%), Gaps = 46/465 (9%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G+I   S G Y  +P+ Q++LD + 
Sbjct: 3   KASRLFCPALI-TPKNAVVKQTEQLSRSQKLLTDLGLIKSGSNGTYQIMPIAQRSLDKLI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L  + LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQLAGGQKISLPILTPSALWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAI 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E ++ S
Sbjct: 122 TAMLATTSPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYSFDVSEETARES 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG LSHE+  ++  GE               
Sbjct: 182 YSAVSEAYDRLFQQLEVPFVKVNAATGMMGGSLSHEYHYVSTVGE--------------- 226

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDV-HNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                       +S+V+  +  +A  S+V    +   S   +     RG+E+ H F  G 
Sbjct: 227 ------------DSLVQCTSCGFAGNSEVLTTPENCPSCQSSNLNEVRGVEIAHTFLLGD 274

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS P+ ATF    GK   V MG YGIG  RV+AA +E     + + WP  +APF + LI
Sbjct: 275 KYSTPLGATFLNTSGKPQSVIMGCYGIGITRVIAAALEVFSSEQELQWPKLLAPFDVCLI 334

Query: 353 NIKAHDQVCRDACEKIYARLSKVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
             K   +  + A       L+ VG  C   ++  DD  +  IG +   A  LG PL ++V
Sbjct: 335 GPKQGSKEQQPAEVIENELLNSVGQLCGPQELLHDDRKDLTIGKRLLEAKRLGHPLTIVV 394

Query: 407 GSKFVSDS--KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           G K +     K+E+ H   G + ++ L E +   +    + + +L
Sbjct: 395 GGKAIQQDSPKLEV-HFNGGDKLELDLSETLKLVAEHSRHKKDLL 438


>gi|172039373|ref|YP_001805874.1| prolyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171700827|gb|ACB53808.1| prolyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 623

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/229 (48%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 21  MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+++Y K    M  L DR D+ +  GPTHEEV+T +
Sbjct: 81  MNAAGAQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQDRELGLGPTHEEVITTV 140

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY+ M
Sbjct: 141 AKDMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNEDEASLQRSYDAM 200

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D
Sbjct: 201 DQAYRNIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTED 249



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVGHIF  GTKYS  M ATF   +G++  + MG YG+G  R+  A +E S+D  G
Sbjct: 453 SARGIEVGHIFQLGTKYSEAMGATFTDENGEEKPIVMGCYGVGVSRLAQAAVEQSYDKDG 512

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP ++AP+++ +I    +DQ   +  + +Y +L+K+G +   DD  E+ G +F  ADL
Sbjct: 513 IIWPVAIAPYQVIIIVPNINDQNQIEVAQNLYDKLNKMGVETLLDDRDERAGVKFKDADL 572

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G P +V+ G    S  KVE+  R +   +++ ++ ++
Sbjct: 573 IGIPYRVVTGRSLKS-GKVEVVTRKSKESQEIEVKNLV 609


>gi|217076405|ref|YP_002334121.1| prolyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|226701439|sp|B7IFB6|SYP_THEAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217036258|gb|ACJ74780.1| prolyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 561

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 155/224 (69%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEI S  L+ R G I + + G+Y++LPL ++ L  +  I+REE
Sbjct: 1   MRFSRLYAPTLREDPSDAEIPSQALLQRAGFIRKIAAGVYTYLPLARRTLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW  SGR+D YG EM++L DR+++    GPTHEE++T++ R+
Sbjct: 61  MDKIGAQEILMPIIQPAELWQRSGRWDDYGPEMMKLKDRHNRDFTLGPTHEELVTELIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQI  KFRDE+RPRFGV+R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELNSYKQLPVSLYQITTKFRDEIRPRFGVLRAREFIMKDAYSFHDSWESLDETYQLFKDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y +I  R+GL+   + A +G IGG+ SHEF+  A+TGE+ V +C
Sbjct: 181 YSKIMERIGLRYSVIEAATGAIGGNESHEFVAFANTGESNVLYC 224



 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GTKYS  M   +   DGK     MG YG G  R + A++E  HD  GII
Sbjct: 402 KGIELGHIFKLGTKYSDSMDVKYMDKDGKMKSFIMGCYGWGISRTLGAIVEQLHDDDGII 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+++ ++ +    +      EK+Y+ L   G DV  DD     G +F  ADL+G
Sbjct: 462 WPRSVAPYEVDIVVVGKEKEKE--FSEKLYSYLLDKGVDVIIDDRNVSPGVKFKDADLIG 519

Query: 400 FPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVIN 436
           FP+++ VG K + + KVEIK R    I  D ++E+++N
Sbjct: 520 FPIRITVGRK-LKEGKVEIKERGKEAILVDANMEQILN 556


>gi|87302633|ref|ZP_01085450.1| prolyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87282977|gb|EAQ74934.1| prolyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 610

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/229 (47%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G + + + G+Y++LPL  + L  ++AI+R+E
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRGGYMRRVASGVYAYLPLLWRVLSKISAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A LW  SGR+  Y      M  L DR ++++  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPALQPASLWERSGRWQGYTAGEGIMFHLVDRQERSLGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y +M
Sbjct: 121 AADLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEADLRLTYQRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D
Sbjct: 181 DQAYRRIFSRCGLRTVAVEADSGAIGGSASQEFMVTADAGEDLILSSAD 229



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P  +  ++RGIEVGHIF  G KYS  + ATF    G D  + MG YGIG  R+  A +E 
Sbjct: 428 PSQRLEASRGIEVGHIFQLGRKYSQALEATFTNEQGLDEPLWMGCYGIGVSRLAQAAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD +GI WP ++APF++ ++   A D V     E+++  L + G +V  DD  E+ G +
Sbjct: 488 HHDQQGICWPVAIAPFEVIVLVASAQDPVQVALGEQLHDELEQAGLEVLLDDRSERAGVK 547

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F  ADL+G P +V+VG +  + ++VE+  R  G + D++   V+       +  R
Sbjct: 548 FKDADLIGIPWRVVVG-RGAASAQVELVERAGGAKRDVAAGAVVALLQDHIAAAR 601


>gi|148238958|ref|YP_001224345.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166980165|sp|A5GJD3|SYP_SYNPW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147847497|emb|CAK23048.1| Prolyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 594

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/231 (48%), Positives = 151/231 (65%), Gaps = 3/231 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I +   GIY++LP+  K L  +NAI+R E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIPSHQLLVRGGYIRRIGSGIYAYLPMMWKVLRKINAIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ ADLW  SGR+  Y +    M  L DR ++ +  GPTHEEV+T++
Sbjct: 61  LNHLGALETLLPQLQPADLWERSGRWQGYTEGEGIMFHLEDRQNRQLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  +++Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANQEDLENTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +Y RIF R GL+++ + A+SG IGG  S E++V A  GE  +  S D +
Sbjct: 181 ATAYARIFERCGLEAVAVDADSGAIGGAASQEYMVTAAAGEDLILTSSDGL 231



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 252 WTA-PYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           W A P    +D+   +  D     P       RGIEVGHIF  G KYS  + A F  + G
Sbjct: 397 WDAMPAQIKADLRTARAGDQCVHDPSQTLSECRGIEVGHIFQLGRKYSEALDARFTNSAG 456

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   + MG YGIG  R+  A +E  HD  GI WP  +APF++ ++  K  D       E+
Sbjct: 457 QQEALLMGCYGIGISRLAQAAVEQHHDEAGISWPLGIAPFQVIVVIAKIQDPTQVALAEE 516

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +Y      G D   DD  E+ G +F  ADL+G P +++VG +   + KVE+  R T
Sbjct: 517 LYQSFLDAGIDALLDDRDERAGVKFKDADLIGIPWRIVVG-RDAGEGKVEVVERST 571


>gi|158335473|ref|YP_001516645.1| prolyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|189083486|sp|B0C230|SYP_ACAM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158305714|gb|ABW27331.1| prolyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 600

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRVGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA E  +P +Q A+LW ESGR+D+Y +    M  L DR D+ +  GPTHEEV+T +
Sbjct: 61  MDAAGAQECLLPQIQPAELWQESGRWDTYTQAEGIMFALQDRQDRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K  Y+KM
Sbjct: 121 ARDMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFSTDEADLKIIYSKM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF+VLA+ GE +V  + D
Sbjct: 181 HDAYCNILQRSGLAYRAVDADSGAIGGSGSQEFMVLAEAGEDEVLYTDD 229



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 7/179 (3%)

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T+ V +  + D  P+    +ARGIE+GHIF  GTKYS  + AT+    GK+  + MG YG
Sbjct: 414 TAQVGDRAVHD--PKQTLQTARGIEIGHIFQLGTKYSQALGATYTNEAGKEQPLVMGCYG 471

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVG 376
           +G  R+  A +E S+D  GI+WP ++AP+   +I  N K  DQV  +A EK+Y+ L+  G
Sbjct: 472 VGVSRLAQAAVEQSYDKDGIVWPVAIAPYHAIIIIPNGKDSDQV--EAAEKLYSELNAAG 529

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +   DD  E+ G +F  ADL+G P +++ G + + +  VE+  R T     ++L++V+
Sbjct: 530 IETLLDDRTERAGVKFKDADLIGIPYRIVTG-RSLKEGNVEMVERATHDAHQIALDQVL 587


>gi|319956647|ref|YP_004167910.1| prolyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319419051|gb|ADV46161.1| prolyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 571

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/225 (48%), Positives = 148/225 (65%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +P  +E P DA + SH  +LR G I     G+Y++LPLG+++LD V  +++EE
Sbjct: 1   MRFSKLLIPTAKEAPSDAVLPSHIYLLRAGFIQSVGAGLYNFLPLGKRSLDRVRQVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +  A+LW ESGR++ YGKE+LR  DR +   + GPTHEE+M ++ R 
Sbjct: 61  LDAAGCQEVDLAFVTPAELWRESGRFEKYGKELLRFTDRKENEFVLGPTHEEMMVNLVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI+ KFRDE+RPRFG+MR REFLM+D YSF    E  K  ++ M  +
Sbjct: 121 SVKSYKQLPLHLYQIKTKFRDEIRPRFGLMRGREFLMEDGYSFHKDEEDMKREFDHMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y RIF RLGL    + A+SG IGG  S EF+VLAD+GE T V C 
Sbjct: 181 YSRIFTRLGLDFRVVEADSGAIGGSGSKEFMVLADSGEDTIVVCE 225



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 1/163 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  GT+YS P++ATF   +GK     MG+YGIG  R++AA+IE  HD +G 
Sbjct: 409 TKGIEVGHIFQLGTRYSEPLNATFLDENGKRRPFVMGTYGIGVSRLLAAIIEQHHDDRGC 468

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IW    APF + +I     +   R+A E++Y  L   G +V  DD  E+ G +    +L+
Sbjct: 469 IWTRESAPFDVEIIVSNIANDAEREAAEELYRLLKSKGVEVLLDDRKERFGFKMKDFELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G PL ++VG K ++D +VE+  R    R D+ LE V +    R
Sbjct: 529 GIPLGIVVGKK-LADGQVELIVRDGLERIDLPLERVADEVLER 570


>gi|299139552|ref|ZP_07032726.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298598480|gb|EFI54644.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 614

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/223 (49%), Positives = 148/223 (66%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHKL+LR G I Q   GIYS+LPLGQ++L+ + AI+REE 
Sbjct: 3   RWSKLFIPTLREAPTDAEVASHKLLLRAGYIRQLGAGIYSYLPLGQRSLNKIIAIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N+ G  E  +P L   +LW ESGR+   G+ +  L DR    +    THEEVMT I R+ 
Sbjct: 63  NKIGQ-EFLLPALNPRELWEESGRWTGMGQNLFHLQDRKGAELCLAMTHEEVMTSIARNE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY K + +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPKAGLLRVRQFTMKDAYSFDVDQAGLDESYRKHYDTY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +RIF R GL+ + + A+SG +GG  S EF+V  D GE  +  S
Sbjct: 182 VRIFKRCGLEFVAVDADSGAMGGSGSQEFMVYTDAGEDLIASS 224



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 8/164 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDG 335
            + +E+GHIF  GTKYS  M A    A+GK+    MG YGIG  R++ A IESS   + G
Sbjct: 444 GKAVEIGHIFKLGTKYSESMGARVLDANGKEVLPIMGCYGIGIERILTAAIESSAAANAG 503

Query: 336 KGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +    P ++APF   +++ N++  D +   A EKI A L   G DV  DD  E+ G +F 
Sbjct: 504 EQYALPAAIAPFAVVVTITNVREADLLA--AGEKIAADLEAAGVDVLLDDRDERAGVKFK 561

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            A+L+G P ++ +G K  ++ +VE+  RLT    D+ L+ +  +
Sbjct: 562 DAELIGVPYRINIGKKL-AEGQVELVDRLTQTTTDLPLDAITAH 604


>gi|161344762|ref|NP_441328.2| prolyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|114152887|sp|P73942|SYP_SYNY3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 603

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL++R G I +   G+Y++LPL  + L+ V  I++EE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLVRAGFIRRLGSGLYAYLPLIWRVLEKVKRIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NRTGA E  +P LQ ++LW  SGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNRTGAQECLLPQLQPSELWKMSGRWDTYTESEGIMFALRDRLERELGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEASLKATYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  IF R GL   P+ A+SG IGG  S EF+VLAD GE ++  ++D
Sbjct: 181 DQAYRNIFSRCGLDFRPVDADSGAIGGSGSQEFMVLADAGEDEILYTED 229



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 17/235 (7%)

Query: 206 LSHEFIVLADTGE---TQVFCSKDFMDFPIPSEN--TDFDDIISLNSIVEQWTAPYAATS 260
           ++ +F+ L D      T      D +D+ +   N  TDF    +L  +V       A   
Sbjct: 367 VADKFLRLVDQTAVDLTNFATGADAVDYHVTGANWSTDF----TLPKLVVDVRKALAGDR 422

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            VH+       P  +  +ARGIEVGHIF  GTKYS  M ATF    G++  + MG YGIG
Sbjct: 423 PVHD-------PTGELKTARGIEVGHIFQLGTKYSQAMGATFTNEQGEEKPLVMGCYGIG 475

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+  A +E S+D  GIIWP ++AP+++ ++     D+      E+IY        DV 
Sbjct: 476 VSRLAQAAVEQSYDKDGIIWPTAIAPYEVVIVVPNVGDEEQMQVAEQIYTEFQAAEVDVL 535

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E+ G +F  ++L+G P +V+ G K +   ++E+  R     +++++  V+
Sbjct: 536 LDDRNERAGVKFKDSELIGIPYRVVTG-KSLKQGQLEVVKRADKSVQNLAIAAVV 589


>gi|119484696|ref|ZP_01619178.1| prolyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457514|gb|EAW38638.1| prolyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 604

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK     L+E+P +AEI SHKL++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSKMLFVTLREDPAEAEIPSHKLLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAEECLLPQVQPAELWQESGRWDTYTKAEGIMFALRDRRNRDLALGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +  E  K +Y  M
Sbjct: 121 AKEMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHIDEESLKATYKDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF+VLA+ GE +V  ++D
Sbjct: 181 DRAYRNILTRSGLAFRAVEADSGAIGGSGSQEFMVLAEAGEDEVLYTED 229



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIEVGHIF  GTKYS  M AT     G++  + MG YG+G  R+  + +E S+D  G
Sbjct: 433 TARGIEVGHIFQLGTKYSQMMGATCTNEKGEEIPLVMGCYGVGVSRLAQSAVEQSYDKDG 492

Query: 338 IIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+   I++ NI    Q+  +  E +Y +L++VG +   DD  E+ G +F  A
Sbjct: 493 IIWPVAIAPYHAIITIPNINDTQQL--ETAENLYTQLNQVGIETLLDDRNERAGVKFKDA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DL+G P +++ G    S  KVEI  R T   +++++E+V++Y
Sbjct: 551 DLIGIPYRIVTGRSLKS-GKVEIVERATHTSQEVAVEDVVSY 591


>gi|288818560|ref|YP_003432908.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288787960|dbj|BAI69707.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752150|gb|ADO45633.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 569

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 149/224 (66%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YF    +E P DAE  SHK +L+ G I Q + GIY++ P G + L  +  I+R+E
Sbjct: 1   MRWSTYFWYTSKEEPADAEAPSHKYLLKGGFIKQVASGIYAFTPAGYRVLKKIENIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L  A+LW E+GR+D YG+E+  L DR+ +    GPTHEE +TD+ R+
Sbjct: 61  MDRSGAQELLLTVLNPAELWRETGRWDLYGRELFTLKDRHGRDYCLGPTHEEEITDMVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LPF  YQIQ+KFRDE RPRFG++R REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 FVNSYRQLPFILYQIQVKFRDEKRPRFGLIRGREFIMKDAYSFDTDEFSALMSYETMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y RIF +L LK++ + A  G IGG  SHEF++L D GE +V +C
Sbjct: 181 YERIFKKLRLKTLMVEASVGAIGGMSSHEFVILTDYGEARVAYC 224



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++G+E+GHIF  GT+YSLPM A +K   G+D  + MG YGIG  R ++A++E   D  GI
Sbjct: 402 SKGLELGHIFLLGTRYSLPMKAFYKDQQGEDKPIYMGCYGIGISRCMSAIVEQYSDELGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAPF++++I +   D   +   EKIY +  ++G DV +DD     G +FA ADL 
Sbjct: 462 KWPTVVAPFELNVICLNPSDAEQKTVAEKIYYQAQEMGLDVIYDDREASAGFKFADADLC 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           GFP +++VG K   + KVE++ R TG + D+ +E+ +
Sbjct: 522 GFPYRIVVGKK-TKEGKVELQKRHTGEKLDVPIEDAV 557


>gi|289548806|ref|YP_003473794.1| prolyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182423|gb|ADC89667.1| prolyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 570

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 152/225 (67%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF    +++P D E  SHK +++ G I Q + G+Y + P   + L  + +I+R+E
Sbjct: 1   MRWSRYFWYTSKDDPADVEAPSHKYLVKGGFIKQIASGVYQYTPPALRVLRKIESIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +RTGA E+ +  L  A+LW E+GR+D YG+E+  L DR+ +    GPTHEE +TD+FRS
Sbjct: 61  MDRTGAQEVLLTVLNPAELWRETGRWDLYGRELFTLKDRHGRDYCLGPTHEEEVTDLFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR LP   YQIQ+KFRDE RPRFG++R+REF+MKDAYSFDL    +  SY  M  +
Sbjct: 121 YVTSYRQLPLILYQIQVKFRDEKRPRFGLIRAREFIMKDAYSFDLDEFSAIMSYEAMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y RIF ++ LK++ + A  G IGG  SHEF+VL D GE +V +C 
Sbjct: 181 YDRIFKKMRLKTLMVEASVGAIGGKSSHEFVVLTDYGEARVAYCE 225



 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+EVGHIF  GT+YS PM A  K ++GKD  V MG YGIG  R ++A++E  HD KGI 
Sbjct: 404 RGLEVGHIFLLGTRYSEPMKAFVKDSEGKDVPVVMGCYGIGISRCMSAIVEQHHDEKGIK 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAPF++ ++ +   D+  R   EK+Y    ++G +V +DD  E  GS+FA ADL G
Sbjct: 464 WPTPVAPFELDIVCVNISDEEQRAVAEKLYTTAQEMGVEVLYDDRDESPGSKFADADLCG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           FP +++VG K V + KVE++ R TG R D  +EE + 
Sbjct: 524 FPYRIVVGKK-VKEGKVEVQSRHTGERWDAPIEEAVG 559


>gi|1653092|dbj|BAA18008.1| proline-tRNA ligase [Synechocystis sp. PCC 6803]
          Length = 617

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL++R G I +   G+Y++LPL  + L+ V  I++EE
Sbjct: 15  MRLSQMLFVTLRDDPADAEIPSHKLLVRAGFIRRLGSGLYAYLPLIWRVLEKVKRIVQEE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NRTGA E  +P LQ ++LW  SGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 75  MNRTGAQECLLPQLQPSELWKMSGRWDTYTESEGIMFALRDRLERELGLGPTHEEVITAI 134

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 135 AKEMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEASLKATYGAM 194

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  IF R GL   P+ A+SG IGG  S EF+VLAD GE ++  ++D
Sbjct: 195 DQAYRNIFSRCGLDFRPVDADSGAIGGSGSQEFMVLADAGEDEILYTED 243



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 17/235 (7%)

Query: 206 LSHEFIVLADTGE---TQVFCSKDFMDFPIPSEN--TDFDDIISLNSIVEQWTAPYAATS 260
           ++ +F+ L D      T      D +D+ +   N  TDF    +L  +V       A   
Sbjct: 381 VADKFLRLVDQTAVDLTNFATGADAVDYHVTGANWSTDF----TLPKLVVDVRKALAGDR 436

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            VH+       P  +  +ARGIEVGHIF  GTKYS  M ATF    G++  + MG YGIG
Sbjct: 437 PVHD-------PTGELKTARGIEVGHIFQLGTKYSQAMGATFTNEQGEEKPLVMGCYGIG 489

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+  A +E S+D  GIIWP ++AP+++ ++     D+      E+IY        DV 
Sbjct: 490 VSRLAQAAVEQSYDKDGIIWPTAIAPYEVVIVVPNVGDEEQMQVAEQIYTEFQAAEVDVL 549

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E+ G +F  ++L+G P +V+ G K +   ++E+  R     +++++  V+
Sbjct: 550 LDDRNERAGVKFKDSELIGIPYRVVTG-KSLKQGQLEVVKRADKSVQNLAIAAVV 603


>gi|149179156|ref|ZP_01857725.1| prolyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148842016|gb|EDL56410.1| prolyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 584

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 152/227 (66%), Gaps = 4/227 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   +P ++E P DAEI SH+LMLR G+I Q   G Y++LPLG KA+     I+REE
Sbjct: 1   MRWSNTLIPTIKEVPADAEIPSHQLMLRAGLIRQLMAGAYTYLPLGWKAIQKAAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDK--AMIYGPTHEEVMTDI 117
            +  GA E+ +P LQ   L+  + R +++G  +++    R ++   M  GPTHEEV+TD+
Sbjct: 61  MDAAGAAELHMPALQPIGLFERTQRKEAFGSVLIQFNVPRGNRQIPMALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP T YQIQ KFR+E RPRFGV+R+ EFLMKDAYSF  + +     Y++M
Sbjct: 121 ISHCISSYKQLPLTVYQIQTKFRNEERPRFGVLRTSEFLMKDAYSFSSSVKQLDEIYDRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           + +Y RIF R GLK +P+ AESGPIGGD SHEF++ AD GE + V+C
Sbjct: 181 YRAYCRIFARCGLKYLPVEAESGPIGGDASHEFMIPADNGEDSIVYC 227



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 12/193 (6%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N +  D  P++        GIEVGH+F  GTKY+  + A F     K H + MG 
Sbjct: 384 TFDLRNAEAGDPCPKSGEPLTIVHGIEVGHVFKLGTKYTEALDANFLDEKEKRHPIIMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+VA + E+ HD  G+IWP S+AP+++ +I +   D       E+ Y  L   G
Sbjct: 444 YGIGVNRIVAGLAETRHDENGLIWPLSIAPYEVLVIPLNVKDDEVMQTAERYYNELKAAG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD   + G +F  ADL+G P +V++G K +   ++E K R     E ++L+  I 
Sbjct: 504 VDVLFDDRNARPGVKFKDADLIGIPYRVVIGGKGLQKGEIETKWRTAENAEMIALDAGI- 562

Query: 437 YASHRFSNNRPVL 449
                    RPVL
Sbjct: 563 ---------RPVL 566


>gi|32267225|ref|NP_861257.1| prolyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|81835913|sp|Q7VFF0|SYP_HELHP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32263278|gb|AAP78323.1| prolyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 588

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/225 (48%), Positives = 150/225 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E+P+DA + SH+ ++R G I Q   GIY++LPLG+K LD V  I++EE
Sbjct: 1   MRFSQLFVNTLKESPKDAVLKSHQYLIRGGFIQQIGSGIYNFLPLGKKLLDKVRFIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +  +  A+LW ESGRY+ YG+E+LR  DR +   + GPTHEEV+T I ++
Sbjct: 61  MDKSGAQEILMGFVTPAELWRESGRYEQYGRELLRFVDRKENEFVLGPTHEEVITHIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDELRPRFG+MR REF+MKD YSF          ++ M  +
Sbjct: 121 TIKSYKQLPLHLYQIHSKFRDELRPRFGLMRGREFIMKDGYSFHSNYADLNREFDVMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RI  R+GL+   + A+SG IGG  S EF+VLA  GE  +   K
Sbjct: 181 YKRILQRMGLEFKVVEADSGAIGGSGSKEFMVLAPCGEDTIVVCK 225



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 96/185 (51%), Gaps = 10/185 (5%)

Query: 260 SDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P+   +    +GIEVGHIF  G KYS  M+A F   DGK   + MG Y
Sbjct: 401 ADIAQSKEGDLCPKCAQELYYTKGIEVGHIFKLGDKYSRAMNAQFLDNDGKTQPLIMGCY 460

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G G  R++ A++E   D  G IW   V+ F I++I     D V  D    +Y  LS  G 
Sbjct: 461 GFGISRILPAILEQKSDDLGCIWSKEVSVFDIAIIISNTKDSVQNDFGSALYEILSACGI 520

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI-------KHRLTGIREDMS 430
           DV  D+  E+ G +    +LLGF   +IVG K +++ KVE+       K+ L    +++ 
Sbjct: 521 DVLLDERDERFGVKMKDFELLGFHSALIVG-KGLNEGKVELIKREGLKKYELCATDKEIL 579

Query: 431 LEEVI 435
           LEE++
Sbjct: 580 LEEIL 584


>gi|318041155|ref|ZP_07973111.1| prolyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 609

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/229 (48%), Positives = 147/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G I +   GIY++LPL  + L  ++AI+REE
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRAGYIRRVGSGIYAYLPLLWRVLQKISAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNAAGALETLLPQLQPAELWQRSGRWAGYTAGEGIMFHLEDRQGRELGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AGDLLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEACLKQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D
Sbjct: 181 DQAYRRIFSRCGLRAVAVEADSGAIGGSASQEFMVTADAGEDLILASGD 229



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 96/169 (56%), Gaps = 1/169 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           ++RGIEVGHIF  G KYS  + ATF    G++  + MG YGIG  R+  A +E  HD  G
Sbjct: 436 ASRGIEVGHIFQLGRKYSAALEATFTNEAGQEEPLWMGCYGIGVSRLAQAAVEQHHDANG 495

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I WP ++APF++ ++     D   R+  E++YA     G DV  DD  E+ G +F  ADL
Sbjct: 496 ICWPTAIAPFEVIVVIANVADAAQRELGEQLYAEFQVAGMDVLLDDRTERAGVKFKDADL 555

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           LG P +V+VG +  +D KVE+  R  G R D++  +V+     +    R
Sbjct: 556 LGIPWRVVVG-RGAADGKVELVQRAGGERSDLAAADVLAQLQGQLERER 603


>gi|283955965|ref|ZP_06373455.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792625|gb|EFC31404.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 568

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDYAANVEAAKRA 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             I  +   E+  A YA+     N K  DSL +  +++A
Sbjct: 240 KKICQD---ERPEANYASKFHTPNIKTIDSLAQFFKINA 275



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 94/161 (58%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD
Sbjct: 401 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 461 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E   R   ++E +  +E++
Sbjct: 521 FELMGFPYALVIG-KGLENNEIEFIQREGLVKELIKTDELM 560


>gi|256545377|ref|ZP_05472740.1| proline--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398938|gb|EEU12552.1| proline--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 565

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 152/219 (69%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+++P+DAE  SHKL++R   I + S G+YS+LPLG K ++ +  I+R+   +  +I
Sbjct: 1   MPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMKVINKIENIVRKSMEKYDSI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T++ +  + SY+ 
Sbjct: 61  EVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREFCLGPTAEEQFTNLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG K SY KM+ +Y+ +F  
Sbjct: 121 LPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLKKSYQKMWDAYVEVFDA 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           L L    +  +SG +GG++SHEF+ LA+TGE ++F +++
Sbjct: 181 LDLDYKIVEGDSGAMGGNISHEFMALAETGEGEIFYTEN 219



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 86/145 (59%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R ++A+IE  +D  GI
Sbjct: 397 ARGIEVGNIFQLGTKYSESLEAYFLDENGKQKPFIMGSYGIGITRSISAIIEQHYDENGI 456

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  VAPF+  I+L+N    +Q  ++  EKIY +L   G +V  DD  E+ G +F   D
Sbjct: 457 IWPTKVAPFEAWITLVNKNNEEQ--KEIAEKIYNKLLDAGIEVMLDDRKERAGVKFNDRD 514

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P ++ VG K   D  VE   R
Sbjct: 515 LVGVPYRITVG-KDAKDDMVEFSKR 538


>gi|227499759|ref|ZP_03929859.1| proline--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227218145|gb|EEI83411.1| proline--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 572

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 155/239 (64%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY++P L+++P DAE  SHK + R G I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MKLSKYYMPTLRQDPVDAETESHKFLTRGGFIRKQASGVYSFLPLGKKVVNKIEAIVREA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM ++ DR+D+    GPT EE  T + + 
Sbjct: 61  MEDYDSIEVSTSILQTREIWEASGRWETFGPEMFKIKDRHDREYCLGPTAEESFTSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD   EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDKDMEGLEVSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y + F R+GL    +  +SG +GG  SHEFI L++TGE  +  + D  D+    E   F
Sbjct: 181 YEQAFDRMGLDYKIVEGDSGSMGGKKSHEFIALSETGEGVILYTDD-SDYAATDEKARF 238



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 90/145 (62%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R V+A++E  HD KGI
Sbjct: 403 ARGIEVGNIFQLGTKYSDSLGAYFLDENGKQQAFIMGSYGIGITRSVSAIVEQYHDDKGI 462

Query: 339 IWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP SVAPF+  ++++NI   +Q  ++  EKIY RL +   DV  DD  E+ G +F   D
Sbjct: 463 IWPTSVAPFEAIVTIVNINNEEQ--KELGEKIYKRLKEERIDVLLDDRKERAGVKFNDRD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P ++ VG K  SD  VE   R
Sbjct: 521 LIGIPYRITVG-KDASDDIVEYSTR 544


>gi|187607298|ref|NP_001120088.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Xenopus
           (Silurana) tropicalis]
 gi|165971208|gb|AAI58530.1| LOC100145097 protein [Xenopus (Silurana) tropicalis]
          Length = 466

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/435 (32%), Positives = 222/435 (51%), Gaps = 35/435 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +  P +    S KLM++ G+I   S G + +LP   +A++ +  +I +E    G  ++ +
Sbjct: 51  EAKPNEPTSKSQKLMIKAGLIRPSSPGCFHYLPFTVRAMEKLIRLIDKEMQDIGGQKIDM 110

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPF 130
           PTL SA LW +SGR+D  GKE+ RL DR+++    GPTHEE +T +  S    + + LP 
Sbjct: 111 PTLSSAALWRQSGRWDLMGKELFRLMDRHNQEYCLGPTHEEAVTHLVASEGGINNKELPL 170

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQI  KFRDE RP FG++R REF MKD Y+FD++ E +  +Y  +  +Y  IF  LG+
Sbjct: 171 LLYQITRKFRDEQRPCFGLLRGREFYMKDMYTFDISDESAYETYRNVCDAYTNIFRALGV 230

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           + + ++A++G IGG +SHEF + A+ GE ++              + DF   + L     
Sbjct: 231 RFVKVQADTGNIGGKMSHEFHLPANIGEDRLLVCG----------SCDFSANVELLQ--- 277

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                       HNEK    +   +    +GIE+GH FY GTKYS    AT   +     
Sbjct: 278 ------------HNEKNC-PVCTGQLKETKGIEIGHTFYLGTKYSHVFKATCYDSQKTPF 324

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ------VCRDA 364
             +MG YGIG  R++AA +E       I WP  +AP+++ LI+ K   +      +    
Sbjct: 325 IAEMGCYGIGVSRLLAASLEVLSKEDDIHWPGLIAPYQVCLISPKKGSKESEAITISETL 384

Query: 365 CEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRL 422
            ++I   +  +  +   DD     IG +   A + G+P  ++VG K + + S  E++   
Sbjct: 385 YDEIIQSVPWLRDETVLDDRSYLTIGKRVKEAHMTGYPYIIVVGKKALETPSLFEVRSHN 444

Query: 423 TGIREDMSLEEVINY 437
           T      S E VI++
Sbjct: 445 TDEVHFFSREGVIDF 459


>gi|254413846|ref|ZP_05027615.1| prolyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196179443|gb|EDX74438.1| prolyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 596

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 112/223 (50%), Positives = 148/223 (66%), Gaps = 3/223 (1%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            L  L+E+P +AEI SHKL++R G I +   GIY++LPL  + L  V+ I+REE N TGA
Sbjct: 2   LLVTLREDPAEAEIPSHKLLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREEMNATGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            E  +P LQ +DLW ESGR+D+Y K    M  L+DR ++ +  GPTHEEV+T I R  I+
Sbjct: 62  QECLLPQLQPSDLWRESGRWDTYTKAEGIMFALSDRQNRELGLGPTHEEVITTIAREMIR 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M  +Y  
Sbjct: 122 SYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHVNEDSLKKTYQDMDQAYRN 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           +  R GL    + A+SG IGG  S EF+VLAD GE ++  ++D
Sbjct: 182 MISRCGLAFRAVEADSGAIGGSGSQEFMVLADIGEDEILYTED 224



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  GTKYS  M AT+    G+++ + MG YG+G  R+  A +E S+D  G
Sbjct: 428 SARGIEAGHIFQLGTKYSKAMGATYTNEAGEENPLYMGCYGVGVSRLAQAAVEQSYDKDG 487

Query: 338 IIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIW  ++AP+   I++ NI    Q+  +A E +Y +L + G +   DD  E+ G +F  A
Sbjct: 488 IIWAPAIAPYHAIITVPNISDTKQM--EAAETLYQQLWQAGVETLLDDRNERAGVKFKDA 545

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DL+G P +++ G + +   KVE+  R T   +++ L++V++
Sbjct: 546 DLIGIPYRIVTG-RSLKQGKVEVAVRATHQSQELPLDQVVS 585


>gi|317969639|ref|ZP_07971029.1| prolyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 633

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 109/229 (47%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEIASHKL+LR G I +   GIY++LPL  + L  V+A++REE
Sbjct: 26  MRVSRLMLVTLRDDPAEAEIASHKLLLRAGYIRRIGSGIYAYLPLLWRVLQKVSAVVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ ++LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 86  LNAAGALETLLPQLQPSELWQRSGRWAGYTDGEGIMFHLEDRQGRELGLGPTHEEVITAL 145

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF    +  K +Y  M
Sbjct: 146 AADLLRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEDCLKQTYGLM 205

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL+++ + A+SG IGG  S EF+V A++GE  +  + D
Sbjct: 206 DQAYRRIFQRCGLRAVAVEADSGAIGGSASQEFMVTAESGEDLILAAGD 254



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 5/165 (3%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     ++RGIEVGHIF  G KYS  + ATF    G++  + MG YGIG  R+  A +E 
Sbjct: 451 PSQTLEASRGIEVGHIFQLGRKYSTALDATFTNESGQEEPLWMGCYGIGVSRLAQAAVEQ 510

Query: 332 SHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            HD  GI WP ++AP+++ ++  N+KA +QV  D  E +Y +L   G DV  DD  E+ G
Sbjct: 511 HHDANGICWPTAIAPYEVIVVIANVKATEQV--DLAEGLYDQLQAAGVDVLLDDRSERAG 568

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +F   +LLG P +V+VG +  ++ +VE+  R TG ++D++ +++
Sbjct: 569 VKFKDTELLGIPWRVVVG-RGAAEGQVELVQRSTGAKQDLAADQL 612


>gi|227544954|ref|ZP_03975003.1| prolyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300910015|ref|ZP_07127475.1| proline--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227185065|gb|EEI65136.1| prolyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300892663|gb|EFK86023.1| proline--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 577

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 115/269 (42%), Positives = 159/269 (59%), Gaps = 2/269 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEAPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +       I    + F 
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDGDYAANIEKAESKFT 240

Query: 241 DI--ISLNSIVEQWTAPYAATSDVHNEKL 267
            +   +  + +E+   P A T D   E L
Sbjct: 241 GVQQTAAPAPIEKKATPGAHTVDEAAESL 269



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 107/179 (59%), Gaps = 6/179 (3%)

Query: 261 DVHNEKLFDSLPENKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D  N K  +  P+ K +    GIE+GHIF  GT YS  + A    ++G+   V MGSYGI
Sbjct: 387 DFRNVKEGEIAPDGKPLKFTPGIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVIMGSYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGC 377
           G  R+++AV E + D  G++WP+S+APF + +I  N K  DQ+     +KI  +L++ G 
Sbjct: 447 GVTRLLSAVAEQNADENGLVWPNSIAPFDVHVIPVNAKKEDQMA--MADKIDQQLTEAGY 504

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V  DD  E+ G +FA +DL+G P++V VG K   D  VEIK R TG   ++  EE++N
Sbjct: 505 EVLVDDRKERAGVKFADSDLIGIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEELVN 562


>gi|254432589|ref|ZP_05046292.1| prolyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197627042|gb|EDY39601.1| prolyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 615

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 149/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G + +   GIY++LPL  + L  V+AI+REE
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRAGYMRRIGSGIYAYLPLLWRVLRKVSAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P +Q A+LW  SGR+  Y      M  L DR  +AM  GPTHEEV+T +
Sbjct: 61  LDAIGALETLLPQMQPAELWQRSGRWSGYTDGEGIMFHLEDRQGRAMGLGPTHEEVVTAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y  M
Sbjct: 121 AADLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEASLRRTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  V  S D
Sbjct: 181 DRAYARIFRRCGLRALAVEADSGAIGGSASQEFMVTADAGEDLVLSSAD 229



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+    S+RGIEVGHIF  G KYS  M A+F    G++  + MG YGIG  R+  A +E 
Sbjct: 430 PDQCLQSSRGIEVGHIFQLGRKYSSAMEASFTNEAGEEEPLWMGCYGIGVSRLAQAAVEQ 489

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD +GI WP  +APF++ ++     D       E+IYA L + G D   DD  E+ G +
Sbjct: 490 HHDDQGIRWPTPIAPFEVIVVVANGADATQAALGEQIYATLQQAGVDTLLDDRSERAGVK 549

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           F  ADL+G P +V+VG +   D +VE+  R  G+R D++ E ++ 
Sbjct: 550 FKDADLIGIPWRVVVG-RGAPDGQVELVRRADGVRVDLAAEALLE 593


>gi|156548890|ref|XP_001606543.1| PREDICTED: similar to ENSANGP00000011343 [Nasonia vitripennis]
          Length = 430

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 229/452 (50%), Gaps = 48/452 (10%)

Query: 2   RRSKYFLPIL----QENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R SK F P +       P+ D    S++LM+  G+I   + G+Y++LPLG ++L  +  +
Sbjct: 6   RVSKLFQPSIVIPKSSLPKIDLTSKSYQLMINAGIISNVATGMYAFLPLGLRSLQKLINL 65

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           I +E    GA ++ +P L   +LW ++ R      E+  L DR+ K  +  PT+EE +++
Sbjct: 66  IDQEMTAIGAQKILLPVLTQTNLWQQTARLKQAQSELFMLNDRHGKEFLLSPTYEESISN 125

Query: 117 IFRSHIKSY--RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +  S +     + LP   YQ   K+RDE++PR G++RSREF+MKD Y+FDL  + +K +Y
Sbjct: 126 MI-SQVGPLQRKQLPLRLYQTSSKWRDEIKPRLGLLRSREFIMKDLYTFDLDADSAKCTY 184

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            ++  +Y +IF R+G+    + A++G IGG +SHE+  ++D GE  +   K         
Sbjct: 185 EEVSDAYKKIFERIGIPYKKVIADTGIIGGSISHEYHYVSDIGEDVILSCK--------- 235

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                    S    V++   P                 E   +S   IEVGH F  GTKY
Sbjct: 236 ---------SCKYEVDKVDEPKTRCPKC----------EEPLISTNSIEVGHTFLLGTKY 276

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S P+ ATF  ++ K  +++MG YG+G  R++A  IE       I WP  +AP  I +I  
Sbjct: 277 SKPLKATFVDSNCKKQFLEMGCYGLGLTRILATAIEILSTNLEIRWPLELAPHSICVIPP 336

Query: 355 K------AHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVG 407
           K      A  Q+  D    +Y+ +     DV +DD +   IG +F  A   G+P+ +I+G
Sbjct: 337 KKGSKEEAKAQLAYD----VYSTIQNCNLDVIFDDRVDMTIGKRFIDARKTGYPVVIIIG 392

Query: 408 SKFVSDSK-VEIKHRLTGIREDMSLEEVINYA 438
              ++D   VE+ +       +++LE V+ + 
Sbjct: 393 KSCLADKPLVEVHNVYKASHVNLALENVVEHV 424


>gi|15616855|ref|NP_240068.1| prolyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11134948|sp|P57333|SYP_BUCAI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25293219|pir||B84958 proline-tRNA ligase (EC 6.1.1.15) [imported] - Buchnera sp.
           (strain APS)
 gi|10038919|dbj|BAB12954.1| prolyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 572

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 148/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y L   ++ P DA+I SH+LM+R+GMI + S G+Y WLP G + L  +  II  E
Sbjct: 1   MLTSQYLLSTSKDIPYDAKIISHQLMIRSGMIRKTSSGLYVWLPTGMRVLKKIKNIITTE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW ES R + YG+E+LR  DR     I GPT+EEV+T+   S
Sbjct: 61  MEKINALEILMPIIQPEYLWKESRRLNLYGEELLRFLDRRKNQFILGPTNEEVVTNFIGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFG++R+REF MKDAYSF +     +++YNK + S
Sbjct: 121 EIHSYKQLPLTVYQIQTKFRDEIRPRFGIIRTREFTMKDAYSFHINQSCLENTYNKFYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y+ IF ++ L    ++A+SG +GG++SHEF   +  GE ++  S D
Sbjct: 181 YINIFKKMNLNFCAVKADSGSMGGNISHEFQAFSQNGEDEIVFSND 226



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + IE+GHIF  G KYS  +  + K  +G    + MG YGIG  R+ AAVIE  HD  GII
Sbjct: 407 QSIEIGHIFQLGQKYSRKIQQSVKIKNGNLKNLYMGCYGIGITRIAAAVIEQHHDKNGII 466

Query: 340 WPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WPDS+APF++ +  IN+K  +++ +     +Y +  K G DV  DD  E+ G  F   DL
Sbjct: 467 WPDSIAPFEVVILPINMKKDNKI-KIIAHFLYKKFKKTGIDVILDDRDERPGVMFNEVDL 525

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P Q+I+  + ++   VE + R       ++++++ N+   + 
Sbjct: 526 IGIPHQIIISKRSINYDNVEYRERKNKENILINIKDIKNFIIQKL 570


>gi|307747462|gb|ADN90732.1| Prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931738|gb|EFV10693.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 568

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G I Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFIEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 275



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD
Sbjct: 401 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 461 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 521 FELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELM 560


>gi|159903050|ref|YP_001550394.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|226701318|sp|A9BED0|SYP_PROM4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159888226|gb|ABX08440.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 600

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I + + GIY++LPL  + +  +N IIREE
Sbjct: 1   MRVSRLMLVTLRDAPADAEIISHQLLIRGGFIKRITSGIYAYLPLMWRVIQKINCIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  G +E  +P L  +DLW ++GR++ Y      M  L DR  + +  GPTHEE++T I
Sbjct: 61  LNAKGCLEALLPQLHPSDLWKKTGRWEGYTAGEGIMFNLKDRQGRELGLGPTHEEIITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               + SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    E  K SY  M
Sbjct: 121 AGESLHSYKQLPVNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANEEDLKTSYASM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y +IF R G+K++ + A+SG IGG  S EF+V AD GE  +  SKD
Sbjct: 181 DDAYRKIFERCGIKTVAVEADSGAIGGAASQEFMVTADAGEDLILISKD 229



 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 95/172 (55%), Gaps = 5/172 (2%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +  RGIEVGHIF  G KYS  + A F    G      MG YGIG  R+  A +E SHD  
Sbjct: 427 IEKRGIEVGHIFQLGRKYSSSLEANFTNEKGSSEPFWMGCYGIGVSRIAQAAVEQSHDQS 486

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GIIWP S++PF++ ++     D+V     E IY +L   G DV  DD  E+ G +F  AD
Sbjct: 487 GIIWPLSISPFEVIIVIANIKDEVQNRLGEDIYKQLRHKGIDVLLDDRDERAGVKFKDAD 546

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVINYASHRFSN 444
           L+G P +V+VG +  S  KVE+  R    +  I  ++ ++E+I   S + S+
Sbjct: 547 LIGIPWRVVVG-RDSSSGKVELLKRSDRSVKLIESEIVVKELIAEISRKKSS 597


>gi|160902700|ref|YP_001568281.1| prolyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|189083505|sp|A9BGA8|SYP_PETMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160360344|gb|ABX31958.1| prolyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 582

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 152/226 (67%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK + P L+E P D++I S++L++R G I + S G+YS+LPLG K +  +  I+REE
Sbjct: 1   MRFSKLYAPTLKETPSDSDIKSYELLIRGGFIRKISSGVYSYLPLGWKVIRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G+ E+ +P +  A+LW  +GR++ YG E+++L DR+D+    GPTHEE++T + ++
Sbjct: 61  MEKIGSQEIMLPIIHPAELWKMTGRWEDYGPELMKLKDRHDREFTLGPTHEEIVTFLMKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+  P   +QI  KFRDE+RPRFGV+R+REF+MKDAY+F         SY   + +
Sbjct: 121 ELRSYKQFPVNLFQIATKFRDEIRPRFGVLRAREFIMKDAYTFHTDYNSLHESYQHFYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
           Y  I  R+GLK + + A++G IGG  SHEF VLA  GE ++F C K
Sbjct: 181 YENIIKRIGLKYVVVEADTGAIGGSFSHEFHVLAQNGEGEIFYCEK 226



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 84/143 (58%), Gaps = 1/143 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVG IF  G KYS  M+A F   +G+     MG YG G  R + A++E  +D  GI
Sbjct: 406 TRGIEVGQIFELGDKYSSKMNAVFTDENGEQKPYIMGCYGWGVSRTLGAIVEQLNDENGI 465

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAPF++++I +  +D+      ++IY    K G DV  DD     G +F   DL+
Sbjct: 466 IWPKSVAPFEVAIIPVAMNDEAIVSTSQEIYDYFLKEGIDVIIDDREVSAGFKFKDIDLI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+++I+G + + + K+E+K R
Sbjct: 526 GVPIKIIIGKR-LKEGKIELKQR 547


>gi|81428868|ref|YP_395868.1| prolyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|114152205|sp|Q38W72|SYP_LACSS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78610510|emb|CAI55561.1| Prolyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 569

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P  AE  SH++MLR G IHQ S G+YS+LPL  + L+N+ AII++E
Sbjct: 1   MKQSKLFIPTLKEVPNSAEAKSHRMMLRAGYIHQVSAGVYSYLPLAYRVLENIQAIIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A++M +P +  A+LW ESGRY +YG  + +  DR+ +  I GPTHEE   D+ R+
Sbjct: 61  MSKIDAVQMQMPGILPAELWEESGRYATYGPNLFKFKDRHSRDFILGPTHEETFADLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP T YQIQ K+RDE RPR+G++R REF+M+DAYSF         ++ +M  +
Sbjct: 121 NIKSYKKLPLTLYQIQTKYRDEDRPRYGLLRGREFIMQDAYSFSANEADLDTTFQQMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    +  ++G +GG  S EF  +A+ GE  +  S
Sbjct: 181 YTNIFERCGLDFRAIVGDAGAMGGKDSMEFSAIAEIGEDTIVYS 224



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 1/167 (0%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E K    +GIE+GHIF  GT+Y+    ATF   +G+   + MGSYGIG  R+++A+ E  
Sbjct: 397 EGKLQFTKGIEIGHIFKLGTRYTEQFGATFLDENGRAKPIIMGSYGIGVSRLLSAITEQQ 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++WP ++AP+ + ++ +   D    +  E+I   L + G  V  DD  E+ G +F
Sbjct: 457 ADENGLVWPSAIAPYDLHVVPVNVKDDAQVELAEQIEGLLEEAGYSVLVDDRKERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           A +DL+G P+++ VG K  ++  VE+K R TG   ++  +E+IN  S
Sbjct: 517 ADSDLIGLPIRITVGKK-AAEEIVEVKLRKTGETLEVKKDELINSLS 562


>gi|148543925|ref|YP_001271295.1| prolyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184153321|ref|YP_001841662.1| prolyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364834|ref|ZP_03848881.1| prolyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325682540|ref|ZP_08162057.1| proline--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|166980132|sp|A5VJD4|SYP_LACRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701303|sp|B2G6V0|SYP_LACRJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148530959|gb|ABQ82958.1| prolyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183224665|dbj|BAG25182.1| prolyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070097|gb|EEI08473.1| prolyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324978379|gb|EGC15329.1| proline--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 577

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/218 (48%), Positives = 142/218 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEAPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGE 218



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 5/158 (3%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT YS  + A    ++G+   V MGSYGIG  R+++AV E + D  G++W
Sbjct: 408 GIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVIMGSYGIGVTRLLSAVAEQNADENGLVW 467

Query: 341 PDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           PDS+APF + +I  N K  DQ+     +KI  +L++ G +V  DD  E+ G +FA +DL+
Sbjct: 468 PDSIAPFDVHVIPVNAKKEDQMA--MADKIDQQLTEAGYEVLVDDRKERAGVKFADSDLI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P++V VG K   D  VEIK R TG   ++  EE++N
Sbjct: 526 GIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEELVN 562


>gi|67922129|ref|ZP_00515644.1| Prolyl-tRNA synthetase, bacterial [Crocosphaera watsonii WH 8501]
 gi|67856029|gb|EAM51273.1| Prolyl-tRNA synthetase, bacterial [Crocosphaera watsonii WH 8501]
          Length = 602

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 149/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+++Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNAAGAQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQERELGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY  M
Sbjct: 121 AKDMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNEDEASLQKSYEAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D
Sbjct: 181 DRAYRNIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTED 229



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 5/175 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M ATF   +G +  + MG YG+G  R+  A +E 
Sbjct: 427 PSQILASARGIEVGHIFQLGTKYSQAMGATFTDENGAEKPIVMGCYGVGVSRLAQASVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++ P+   +I  NIK  +Q+  +  + +Y +L+K+G +   DD  E+ G
Sbjct: 487 SYDKDGIIWPVAITPYHAIIIVPNIKDKNQM--EVAQNLYNQLNKIGVETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F  ADL+G P +V+ G + +   KVE+  R T   +++ +  ++    +   N
Sbjct: 545 VKFKDADLIGIPYRVVTG-RSLKAGKVEVVTRQTKESQEIEVTNLVETLKNWLKN 598


>gi|315124065|ref|YP_004066069.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017787|gb|ADT65880.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 508

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 275



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 63/108 (58%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 401 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  +
Sbjct: 461 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLE 508


>gi|157363113|ref|YP_001469880.1| prolyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166980167|sp|A8F3T2|SYP_THELT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157313717|gb|ABV32816.1| prolyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 575

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 151/226 (66%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ + P L+E P DAE+ SH L+ R G I + + G+YS+LPL ++ L  + AI+R+E
Sbjct: 1   MKFSQLYAPTLKEAPADAEVISHALLYRAGFIRKIAAGVYSYLPLAKRTLSKIEAIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+S+P +Q A+LW  +GR+D YG EM++L DR+++    GPTHEEV T + + 
Sbjct: 61  MNEIGAQEVSMPVIQPAELWKTTGRWDDYGPEMMKLKDRHERDFTLGPTHEEVFTHMVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  K+RDE+RPRFG++R+REF+MKD YSF  + +    +Y     +
Sbjct: 121 ELRSYKQLPLFLYQIGPKYRDEIRPRFGLLRAREFIMKDGYSFHDSDQSLNETYEACKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
           Y +I  ++GLK I + A SG IGG+ SHEF+  A  GET +  C K
Sbjct: 181 YRKITEKIGLKYIIIEAASGAIGGNESHEFVSFAPVGETNLLKCEK 226



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 83/143 (58%), Gaps = 1/143 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIE+  IF  GTKYS  M+A +    G+     MG YG G  R +AA++E  HD  GI
Sbjct: 402 SKGIEIAQIFKLGTKYSKAMNALYMDDKGEVKPFIMGCYGWGISRTMAAIVEQLHDEDGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF++ +  + A DQ  R   +K+Y  L     DV  DD     G +F  ADL+
Sbjct: 462 LWPRSVAPFELIITVVSAQDQDQRIFAQKLYNSLLSSEIDVLLDDRDISPGMKFKDADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           GFPL++ VG K + +  VE+K R
Sbjct: 522 GFPLRITVG-KSLKEGMVELKSR 543


>gi|148235110|ref|NP_001079554.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Xenopus laevis]
 gi|28278090|gb|AAH44273.1| MGC53152 protein [Xenopus laevis]
          Length = 466

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 139/435 (31%), Positives = 225/435 (51%), Gaps = 35/435 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +  P +    S KLM++ G+I   + G + +LP   +A++ +  +I +E    G  ++ +
Sbjct: 51  ESKPNEPTSKSQKLMIKAGLIRPSNPGCFHYLPYTVRAMEKLIRLIDKEMQDIGGQKIDM 110

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPF 130
           PTL SA LW +SGR+D  GKE+ RL DR+++    GPTHEE++T +  S    + + LP 
Sbjct: 111 PTLGSAALWRQSGRWDLMGKELFRLKDRHNQEYCLGPTHEELVTHLVASEGGINNKELPL 170

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQI  KFRDE RP FG++R REF MKD Y+FD++ E +  +Y  +  +Y  IF  LG+
Sbjct: 171 LLYQITRKFRDEQRPCFGLLRGREFYMKDMYTFDISEESAYETYRNVCDAYSNIFRALGV 230

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + ++A++G IGG +SHEF + A+ GE ++              + DF   + L     
Sbjct: 231 HFVKVQADTGNIGGKMSHEFHLPANIGEDRLLVCG----------SCDFSANVELL---- 276

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                      +H+EK    +   +    +GIE+GH FY GTKYS    A    +     
Sbjct: 277 -----------LHDEKNC-PVCTGQLKETKGIEIGHTFYLGTKYSHVFKANCYDSQKTPF 324

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--DACEKI 368
             +MG YGIG  R++AA +E   +   I WP  +AP+++ LI+ K   +        E +
Sbjct: 325 LAEMGCYGIGVSRLLAASLEVLSNEDDIHWPGLIAPYQVCLISPKKGSKEIEAISVAETL 384

Query: 369 YARLSKVGC----DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRL 422
           Y  + +  C    +   DD     IG +   A ++G+P  +++G K + + S  E++   
Sbjct: 385 YDDIIQSVCGLRDETVLDDRSYLTIGKRVKEAHMMGYPYVIVIGKKALETPSLFEVRSHN 444

Query: 423 TGIREDMSLEEVINY 437
           T     +S E VI++
Sbjct: 445 TDEVHFLSREGVIDF 459


>gi|157414824|ref|YP_001482080.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047085|sp|A8FKW6|SYP_CAMJ8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157385788|gb|ABV52103.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
          Length = 568

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G I Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFIEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGCEFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 275



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD
Sbjct: 401 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 461 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 521 FELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELM 560


>gi|205355399|ref|ZP_03222170.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346633|gb|EDZ33265.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 569

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  ++VG K +  +++E+  R   I+E +  +E++
Sbjct: 522 FELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELM 561


>gi|57238257|ref|YP_178662.1| prolyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|81819550|sp|Q5HVM3|SYP_CAMJR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57167061|gb|AAW35840.1| prolyl-tRNA synthetase [Campylobacter jejuni RM1221]
          Length = 569

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A   E+SHD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVATEASHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  ++VG K +  +++E+  R   I+E +  +E++
Sbjct: 522 FELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELM 561


>gi|87123890|ref|ZP_01079740.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Synechococcus sp. RS9917]
 gi|86168459|gb|EAQ69716.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Synechococcus sp. RS9917]
          Length = 594

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 112/228 (49%), Positives = 147/228 (64%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I +   GIY++LPL  + L  +NAI+REE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGFIRRVGSGIYAYLPLMWRVLQRINAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNALGALETLLPQLQPAELWERSGRWQGYTAGEGIMFHLDDRQGRQLGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       +  Y  M
Sbjct: 121 AGELLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHADASDLQACYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +Y RIF R GL+++ + A+SG IGG  S EF+V A+ GE  +  S+
Sbjct: 181 DGAYRRIFDRCGLQTVAVEADSGAIGGAASQEFMVTAEAGEDLILMSE 228



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 101/182 (55%), Gaps = 8/182 (4%)

Query: 261 DVHNEKLFD---SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N +  D   S PE   ++ RGIEVGHIF  G KYS  M A+F  ADG    + MG Y
Sbjct: 408 DLRNAQAGDRCQSDPEQTLMARRGIEVGHIFQLGRKYSQAMDASFTNADGGQEALWMGCY 467

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A +E  HD  GI WP ++APF++ ++     +   R   E +YARL   G 
Sbjct: 468 GIGVSRLAQAAVEQHHDDAGICWPLAIAPFQVIVVVANLQEATQRSLGEDLYARLMAQGV 527

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEE 433
           D   DD  E+ G +F  ADL+G P +++VG +  +D +VE+  R T     +  D +LE 
Sbjct: 528 DALLDDRQERAGVKFKDADLIGIPWRIVVG-RAAADGQVELVERATRQADVLTVDAALER 586

Query: 434 VI 435
           V+
Sbjct: 587 VL 588


>gi|315057961|gb|ADT72290.1| Prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 568

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 275



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A   E+SHD
Sbjct: 401 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVATEASHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 461 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  ++VG K +  +++E+  R   I+E +  +E++
Sbjct: 521 FELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELM 560


>gi|86153499|ref|ZP_01071703.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843225|gb|EAQ60436.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 569

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 522 FELMGFPYALVIG-KGLENNEIELIQREDLVKELIKTDELM 561


>gi|206895814|ref|YP_002247094.1| prolyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|226699133|sp|B5Y8J7|SYP_COPPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206738431|gb|ACI17509.1| prolyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 558

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 105/222 (47%), Positives = 150/222 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F   L+E+P+DAE  SHKL++R  MI Q + G+Y++LP G K L  +  ++REE
Sbjct: 1   MRASKFFYKTLREDPKDAEATSHKLLIRASMIKQIASGVYAFLPFGHKVLKKIETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  EM++  +  A++W ++GR++ YG +M++  DR ++    GPTHEE +T +   
Sbjct: 61  MDRIGGQEMTMSIMMPAEMWKKTGRWELYGDDMIKFKDRKEQDFCLGPTHEEQITTLAGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  K +Y+++  +
Sbjct: 121 LISSYKQLPQLVYQIQTKFRDEPRPRFGLIRLREFVMKDAYSFHDSEESLKTTYDQVLNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y RI  R+GL    + A+ G IGG LSHEFIV A+ GE+ VF
Sbjct: 181 YKRILERIGLNYEVVAADPGQIGGTLSHEFIVPAEVGESTVF 222



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 98/160 (61%), Gaps = 8/160 (5%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S  G+EVGHIF  GT+YS P+ A +   DG+     MG YGIG  R+V+AVIE  HD  G
Sbjct: 397 SFTGLEVGHIFRLGTRYSEPLEAFYHSEDGERKPFIMGCYGIGVTRLVSAVIEQHHDDFG 456

Query: 338 IIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I+WP SVAP+ + +I I     QV     +++   LS  G DVF DD  E+ G +F  AD
Sbjct: 457 IVWPWSVAPYHVVIIPIGDVEAQV-----QELENTLSSAGLDVFVDDRDERPGVKFVDAD 511

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+GFP++++V +K   + KVEIK R TG    +  E+V++
Sbjct: 512 LIGFPVRLVVNAK--KEGKVEIKFRKTGETLLVGQEDVLD 549


>gi|194467742|ref|ZP_03073728.1| prolyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194452595|gb|EDX41493.1| prolyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 577

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 106/218 (48%), Positives = 142/218 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEVPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGE 218



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 107/179 (59%), Gaps = 6/179 (3%)

Query: 261 DVHNEKLFDSLPENKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D  N K  +  P+ K +    GIE+GHIF  GT YS  + A    ++G+   V MGSYGI
Sbjct: 387 DFRNVKEGEIAPDGKPLKFTPGIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVIMGSYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGC 377
           G  R+++AV E + D  G++WPDS+APF + +I  N K  DQ+     +KI  +L++ G 
Sbjct: 447 GVTRLLSAVAEQNADENGLVWPDSIAPFDVHVIPVNAKKEDQMA--MADKIDQQLTEAGY 504

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V  DD  E+ G +FA +DL+G P++V VG K   D  VEIK R TG   ++  EE++N
Sbjct: 505 EVLVDDRKERAGVKFADSDLIGIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEELVN 562


>gi|86151603|ref|ZP_01069817.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85841232|gb|EAQ58480.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 569

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 522 FELMGFPYALVIG-KGLENNEIELIQREDLVKELIKTDELM 561


>gi|212697111|ref|ZP_03305239.1| hypothetical protein ANHYDRO_01677 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675886|gb|EEB35493.1| hypothetical protein ANHYDRO_01677 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 447

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 156/232 (67%), Gaps = 1/232 (0%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+++P+DAE  SHKL++R   I + S G+YS+LPLG + ++ +  I+R+   +  +I
Sbjct: 1   MPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMRVINKIENIVRKSMEKYDSI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T + +  + SY+ 
Sbjct: 61  EVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREYCLGPTAEEQFTSLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG + SY KM+ +Y+ +F  
Sbjct: 121 LPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLEKSYQKMWDAYVEVFDA 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           LGL    +  +SG +GG+ SHEF+ LA+TGE ++F +++  D+    E+  F
Sbjct: 181 LGLDYKIVEGDSGAMGGNTSHEFMALAETGEGEIFYTEN-SDYAATDESAKF 231



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           ARGIEVG+IF  GTKYS  + A F   +GK   +  G
Sbjct: 397 ARGIEVGNIFQLGTKYSESLEAYFLDENGKQKTIYNG 433


>gi|218562195|ref|YP_002343974.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|81858473|sp|Q9PHX1|SYP_CAMJE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112359901|emb|CAL34689.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 569

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 522 FELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELM 561


>gi|315453026|ref|YP_004073296.1| prolyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132078|emb|CBY82706.1| prolyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 577

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 144/226 (63%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P  +E P+DA + SH+ M++ G + Q   G+Y +LPLG K L  + A+++E 
Sbjct: 1   MRFSQLFAPTTKEVPKDAVLKSHQFMVQGGYLQQMGSGLYHFLPLGHKVLSKIRAVVKEV 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E ++  +  A LW ESGR++ YGKE+L   DR +   +  PTHEE +T I +S
Sbjct: 61  MDSYGAQECTLGFVVPASLWQESGRFEQYGKELLSFPDRKNNLCVLSPTHEEAITQIAKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           HIKSY+ LP   YQI  KFRDE+RPRFG+MR+REF+MKDAYSF  + E     + +M  +
Sbjct: 121 HIKSYKQLPLNLYQIHTKFRDEIRPRFGLMRAREFVMKDAYSFHASTECLDKEFERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
           Y  IF RLGL    + A+SG IGG  S EF+VLA  GE  V  C K
Sbjct: 181 YSEIFSRLGLNFRAVEADSGAIGGSKSKEFVVLAACGEDSVIVCQK 226



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 2/151 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D+ PE +      R IEVGHIF  G KYS  + A +   +G+  Y +MG YG
Sbjct: 394 DIAQARPEDACPECQGTLSEQRSIEVGHIFKLGNKYSKSLEARYLDQEGQLQYFEMGCYG 453

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A++E + D KG +W  + APF++ ++   + D       E++Y  L   G D
Sbjct: 454 IGVSRLMSAILEQNSDEKGCVWSKTSAPFEVVVLVANSKDSALESLGEELYQELKGAGVD 513

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           V  DD  ++ G++ A  +L+G    +IVG +
Sbjct: 514 VLLDDRIDRFGAKMADFELIGCSHALIVGKQ 544


>gi|88597079|ref|ZP_01100315.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190768|gb|EAQ94741.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315927040|gb|EFV06395.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 568

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 275



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 401 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 461 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDRNERFGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 521 FELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELM 560


>gi|86149024|ref|ZP_01067256.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840382|gb|EAQ57639.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 569

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 522 FELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELM 561


>gi|300864298|ref|ZP_07109176.1| Prolyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300337687|emb|CBN54322.1| Prolyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 601

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E P +AEI SHKL+LR G I +   G+Y +LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFATLREEPAEAEIPSHKLLLRAGYIRRIGSGVYVYLPLLWRVLKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MDATGAQECLLPQLQPAELWRESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHKDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  +  R GL+   + A+SG IGG  S EF+VLA+ GE +V  ++D
Sbjct: 181 AQAYSNMLRRCGLEFRGVDADSGAIGGSGSQEFMVLAEAGEDEVLYTED 229



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 5/165 (3%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  + +E 
Sbjct: 427 PAQTLQTARGIEVGHIFQLGTKYSQAMGATYTNEQGEEIPLVMGCYGLGVSRLAQSAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           S+D  GIIWP ++AP++  IS+ NI    Q+  +  EK+Y  L++ G +   DD  E+ G
Sbjct: 487 SYDKDGIIWPVAIAPYQVIISIPNISDAQQI--EVAEKLYTELNQAGVETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +F  ADL+G P +++ G + +   KVE+  R      ++++++V
Sbjct: 545 VKFKDADLIGIPYRIVTG-RSLKQGKVEVVERAAHKSHEIAIDDV 588


>gi|148925913|ref|ZP_01809600.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844899|gb|EDK22003.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 576

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 9   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 69  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 129 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 189 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 245 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 283



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A   E+SHD
Sbjct: 409 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVATEASHD 468

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 469 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 528

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  ++VG K +  +++E+  R   I+E +  +E++
Sbjct: 529 FELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELM 568


>gi|307720827|ref|YP_003891967.1| prolyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306978920|gb|ADN08955.1| prolyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 568

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 146/226 (64%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRSK F+P  +E P DA + SH  + R G I Q + G+Y++LPL ++ +  +  II EE
Sbjct: 1   MRRSKAFIPTTKEAPSDATLPSHIFLSRAGFITQVAAGLYNYLPLAKRVIKKIENIINEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +  +  A+LW ESGR + +GKE+LR  DR +   + GPTHEE+M D+ R+
Sbjct: 61  MTKIGAQEVELSFVTPAELWQESGRIEKFGKELLRFHDRKNNLFVLGPTHEEMMVDVVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQI+ KFRDE RPRFG+MR REF+MKD YSF  T E     ++ +  +
Sbjct: 121 RVTSYKNLPLNLYQIKTKFRDEARPRFGLMRGREFIMKDGYSFHATTEDLDREFDTVEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y +I  RLGL    + A+SG IGG  S E +VLAD+GE T   CSK
Sbjct: 181 YKKILTRLGLDFRIVEADSGAIGGSGSKELMVLADSGEDTIAVCSK 226



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 94/160 (58%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  GT YS  + A F   +GK     MG+YG+G  R+VAAVIE  HD  G 
Sbjct: 406 TKGIEVGHIFKLGTTYSEALKAEFLDENGKAQPFIMGTYGMGVSRMVAAVIEQHHDDNGC 465

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW  + AP+ ++++  NIK   QV   A EK+Y +L     +V  DD  E+ G +   A+
Sbjct: 466 IWTKATAPYMVNIMISNIKDEAQV--QAGEKLYKQLQDADVEVMLDDRKERFGFKMKDAE 523

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+GFP  +++G + V +  ++I  R+T  + D+  EE+ N
Sbjct: 524 LIGFPYTIVIGKELV-NGHMQIFERVTKEKTDIKSEEIFN 562


>gi|224373093|ref|YP_002607465.1| prolyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|254782910|sp|B9LA07|SYP_NAUPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|223588823|gb|ACM92559.1| prolyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 574

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 150/226 (66%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P+DA +ASHK ++R G I Q + GIY + PLG+  LDN+  II++E
Sbjct: 1   MRWSRFFAYTQKEAPKDAVVASHKYLVRGGYIKQVAAGIYDFAPLGKMVLDNIRDIIKKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +  +   +LW E+GR   YGKE+LR+ DR D++ +  PT+EE + D+ R 
Sbjct: 61  MDASGAQEVMLTFVTPNELWEETGRAKKYGKELLRIKDRKDQSFVLAPTNEESVVDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF  T E     +N M  +
Sbjct: 121 TIKSYKQLPVNLYQINLKFRDEARPRFGLLRGREFIMKDAYSFHATEEDLDREFNLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y  IF +LGL    + A+SG IGG  S EF+VLADTGE   V CS+
Sbjct: 181 YKNIFTKLGLDFRAVWADSGAIGGSGSKEFMVLADTGEDDIVVCSE 226



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 103/163 (63%), Gaps = 9/163 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  GT YS PM+ATF   +GK     MG YGIG  R+++A IE +HD KGI
Sbjct: 410 TKGIEVGHIFKLGTVYSEPMNATFLDENGKAKPFIMGCYGIGVSRLISAAIEQNHDDKGI 469

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +APF + +I  ++K  +Q+     E +Y +L+  G     DD  E+ G + A  +
Sbjct: 470 IWPKQIAPFVVDIIVGDVKKDEQLI--FAEDLYDKLTSAGVKTILDDRAERFGPKIADFE 527

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVI 435
           L+GFP+ VIVG K + D KVE++ R TG    + +DM+LE+V+
Sbjct: 528 LVGFPVCVIVGKK-LKDGKVEVRDRRTGEKFEVEKDMALEKVM 569


>gi|329769169|ref|ZP_08260589.1| prolyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328839388|gb|EGF88966.1| prolyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 566

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 20/315 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  K + N+  +IR+E
Sbjct: 1   MRQSRTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATKVIQNIEKVIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQS D W +SGR+   G E++R+ DR +      PT EEV+     +
Sbjct: 61  HAKIGASELLMPILQSEDYWKQSGRWYKMGDELIRVTDRKNAGYALSPTAEEVICQTVSN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  +PE  + +YN  + +
Sbjct: 121 MVTSYKQLPVNLYQIQTKFRDEIRPRLGLLRGKEFIMKDGYSFHDSPESLRETYNDYYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE          D  + +E +D+ 
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEVGE----------DTIVYTEESDYA 230

Query: 241 DIISLNSIVEQ-WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I   ++VEQ +T P   T     E+     P  + +           Y G + +  M 
Sbjct: 231 ANIETAAVVEQNYTMP---TDYEKKERSLLETPNQQTIDDIAA------YCGVEVNRAMK 281

Query: 300 ATFKGADGKDHYVQM 314
           A    ADG+ + V M
Sbjct: 282 ALALKADGEFYLVLM 296



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 104/160 (65%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  G  YS  M  T+  A+G+ ++  MG YGIG  RV++A+IE  +D  GI
Sbjct: 403 AKGIEVGQVFELGKGYSESMDITYLDANGRANHFYMGCYGIGVSRVISAIIEQHNDENGI 462

Query: 339 IWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  V P+++ L  ++IK  +QV +   E++Y +L++ G +V +DD  E+ G +F  AD
Sbjct: 463 IWPKEVTPYQVHLVCVDIKKEEQVKQ--SEELYKQLTEAGYEVLYDDRAERAGVKFNDAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G PLQV+VG K V D  VE+K R T  + D  +E+V++
Sbjct: 521 LIGIPLQVVVGKK-VGDGIVEVKERKTLEKVDTKVEDVLS 559


>gi|221124302|ref|XP_002161215.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 587

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 140/198 (70%), Gaps = 1/198 (0%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           +R GMI +   GIY+++P+G + +  V AI+REE NR GA+E+++P +Q A+LW E+GR+
Sbjct: 1   MRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREEMNRAGAVELTMPVIQPAELWQETGRF 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  G E+LR+ DR+++  +  PT EEV+TDI R  IKSY+ LP   YQIQ KFRDE RPR
Sbjct: 61  DKMGPELLRIKDRHERDYVVQPTSEEVVTDIARQEIKSYKQLPKNLYQIQTKFRDERRPR 120

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           FG+MR REF+MKDAYSFD   + +K SY  M  +Y RIF R GL    + A+SG IGGDL
Sbjct: 121 FGLMRGREFIMKDAYSFDRDQDSAKASYQVMAKAYRRIFDRFGLTYRAVAADSGAIGGDL 180

Query: 207 SHEFIVLADTGETQ-VFC 223
           S EF V+A TGE   V+C
Sbjct: 181 SEEFQVIAATGEDAIVYC 198



 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 108/187 (57%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V A  RGIEVGH+FY GTKYS  M+ATF   +GK  +++MG 
Sbjct: 366 VADLRNVVEGDASPDGKGVLAIERGIEVGHVFYLGTKYSKAMNATFLDVNGKPQFMEMGC 425

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD KGIIWPD++APF + L  I        + A +K+Y  L   
Sbjct: 426 YGIGITRLPAAAIEQNHDDKGIIWPDALAPFTVVLCPINPDRFPDVKAAADKLYEELLSA 485

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G+ FA  +L+G P +V +G + + +  VE +HR       + + E+ 
Sbjct: 486 GVDVILDDRNERPGAMFADWELIGVPHRVNIGDRGLKEGVVEYQHRRESAATSVPVAEIA 545

Query: 436 NYASHRF 442
           +    R 
Sbjct: 546 SLLLGRL 552


>gi|305433094|ref|ZP_07402250.1| proline--tRNA ligase [Campylobacter coli JV20]
 gi|304443795|gb|EFM36452.1| proline--tRNA ligase [Campylobacter coli JV20]
          Length = 569

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/285 (40%), Positives = 166/285 (58%), Gaps = 16/285 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MKFSKLYAPSLKEAPKDATLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +          +  EN D+ 
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDI----------LICENCDYA 231

Query: 240 ---DDIISLNSIV--EQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
              +  +  N     E+  A YA+     N K  DSL +  +++A
Sbjct: 232 ANVEAAVRANKTCDEERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 91/159 (57%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG 
Sbjct: 406 SKGIEVGHIFKLGQKYSKAMNANFLDENGKSKPFYMGCYGIGVSRLLAVAIEANHDEKGC 465

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IW  ++APF + +I     D+   +   K+Y  LS  G +V  DD  E+ G +    +L+
Sbjct: 466 IWNKTLAPFTLEIIISNIKDEKSLEFATKLYEDLSNAGIEVLLDDRNERFGVKMNDFELM 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           GFP  ++VG     D ++E   R T  ++ +S +EV ++
Sbjct: 526 GFPYALVVGKGLEKD-ELEFIDRKTLEKKIISSKEVFDF 563


>gi|300813650|ref|ZP_07093972.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512192|gb|EFK39370.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 570

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEI SHK +LR G I + + GIY++L LG + +  +  I+REE
Sbjct: 1   MRLSKLYMPTLREDPQDAEIVSHKFLLRGGFIRKSASGIYTYLTLGYRVVRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W +SGR++ YG EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MDRCGSQEILMSAIQPREIWEDSGRWEKYGPEMFKLKDRHDRDFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD   EG + SY  M+ +
Sbjct: 121 EVNSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDEDLEGLEKSYMNMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y ++F RL L    +  ++G +GG  SHEFI LA++GE  +  S++
Sbjct: 181 YEKVFDRLSLNYKIVEGDNGAMGGSGSHEFIALAESGEGVIVFSEN 226



 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 1/168 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG+IF  GTKYS  ++AT+   +GK  Y  MGSYGIG  R VAA++E ++D  GI
Sbjct: 403 ARGIEVGNIFQLGTKYSKSLNATYLDRNGKAQYFYMGSYGIGITRTVAAIVEQNYDENGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP + AP++  +  I  +++  ++  EKIY  L + G +V  DD   + G +F   DL+
Sbjct: 463 IWPVATAPYECIVTVINPNNEEQKELGEKIYKSLQEKGIEVLIDDRDLRAGVKFKDRDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P+++ VG K  SD  VE   R      ++S +  I  A     + R
Sbjct: 523 GIPVRITVGKK-ASDDVVEYSLRKEMKNSEISSQSAIESAIKEVYDGR 569


>gi|282883093|ref|ZP_06291693.1| proline--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297070|gb|EFA89566.1| proline--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 570

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEI SHK +LR G I + + GIY++L LG + +  +  I+REE
Sbjct: 1   MRLSKLYMPTLREDPQDAEIVSHKFLLRGGFIRKSASGIYTYLTLGYRVVRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W +SGR++ YG EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MDRCGSQEILMSAIQPREIWEDSGRWEKYGPEMFKLKDRHDRDFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD   EG + SY  M+ +
Sbjct: 121 EVNSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDEDLEGLEKSYMNMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y ++F RL L    +  ++G +GG  SHEFI LA++GE  +  S++
Sbjct: 181 YEKVFDRLSLNYKIVEGDNGAMGGSGSHEFIALAESGEGVIVFSEN 226



 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 1/168 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG+IF  GTKYS  ++AT+   +GK  Y  MGSYGIG  R VAA++E ++D  GI
Sbjct: 403 ARGIEVGNIFQLGTKYSKSLNATYLDRNGKAQYFYMGSYGIGITRTVAAIVEQNYDENGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP + AP++  +  I  +++  ++  EKIY  L + G +V  DD   + G +F   DL+
Sbjct: 463 IWPVATAPYECIVTVINPNNEEQKELGEKIYKSLQEKGIEVLIDDRDLRAGVKFKDRDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P+++ VG K  SD  VE   R      ++S +  I  A     + R
Sbjct: 523 GIPVRITVGKK-ASDDVVEYSLRKEMKNSEISSQSAIESAIKEVYDGR 569


>gi|154249367|ref|YP_001410192.1| prolyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|171769336|sp|A7HKV2|SYP_FERNB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154153303|gb|ABS60535.1| prolyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 574

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/225 (46%), Positives = 152/225 (67%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P L+E P DAE+ S +L+ R G I + + G+Y++LPLG++ L  +  I+REE
Sbjct: 1   MRFSQFYAPTLKEAPADAEVPSQELLTRAGFIRKIAAGVYTYLPLGRRVLLKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q A+LW +SGR++ YG EM++L DR+ +    GPTHEE++T + ++
Sbjct: 61  MDNIGANEILMPIIQPAELWKQSGRWEDYGPEMMKLKDRHGRDFTLGPTHEELVTFLVQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+  K+RDE+RPRFGV+R+REF+MKD YSF    E    +Y     +
Sbjct: 121 ELNSYKQLPITLYQMANKYRDEIRPRFGVLRAREFIMKDGYSFHSDWESLDETYKAHRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y  I  R+GLK   + A SG IGG+ SHEF+  ADTGE+ V FC 
Sbjct: 181 YSNIMERIGLKYAVVEASSGAIGGNESHEFVAFADTGESNVLFCE 225



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +GIE+GHIF  GTKYS  M + +   DG+     MG YG G  R + A++E  HD KG
Sbjct: 400 AKKGIELGHIFKLGTKYSEAMGSKYMDKDGQLKPFIMGCYGWGVSRTLGAIVEQLHDEKG 459

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAPF + +  +  ++ + +   E++Y  L + G +V  DD     G +F  ADL
Sbjct: 460 IIWPLSVAPFAVVITPVSNNENLMK-FSEELYNFLVEKGEEVLLDDRNISPGMKFNDADL 518

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVINY 437
           +G P +V VG K +S+  VEIK R TG   +   +LEE+  +
Sbjct: 519 IGIPFRVTVG-KALSEGMVEIKWR-TGQQFKVKATLEEIYEF 558


>gi|78212243|ref|YP_381022.1| prolyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|114152271|sp|Q3ALR5|SYP_SYNSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78196702|gb|ABB34467.1| prolyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 593

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 146/229 (63%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LPL  + L  + A++REE
Sbjct: 1   MRVSRLLLVTLRDVPAEAEITSHQLLLRAGYIRRVGSGIYAYLPLMWRVLQKITAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA E  +P L  A+LW +SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRAGAQETLLPQLHPAELWQKSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  +    + +Y  M
Sbjct: 121 AGELLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRETYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D
Sbjct: 181 DQAYRRIFERCGLDAVPVDADSGAIGGAASQEFMVTADAGEDLILISDD 229



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 107/230 (46%), Gaps = 13/230 (5%)

Query: 200 GPIGGDLSHEFIVLADTGETQVF-----CSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           G IG DLS + +  A T +          + +   F   +   D     +  + +EQ   
Sbjct: 346 GSIGPDLSDDVLKGAKTWQPTFLRLADETASELGSFICGANQPDLHRFNTSWTAIEQ--- 402

Query: 255 PYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
               T D+ N +  D      E++    RGIEVGHIF  G KYS  M + F   +GK   
Sbjct: 403 -KPTTLDLRNARAGDVCQHNLESRLTEKRGIEVGHIFQLGRKYSEAMESGFTNENGKTEP 461

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG YGIG  R+  A +E  HD  GI WP ++APF+  ++     D       E +YA 
Sbjct: 462 FWMGCYGIGVSRLAQAAVEQHHDDSGICWPTAIAPFEAIVVVANIQDDTQGQLGEALYAE 521

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L     DV  DD  E+ G +F  ADL+G P +++VG +  S+  VE+  R
Sbjct: 522 LQAADVDVLLDDRKERAGVKFKDADLIGIPWRIVVG-RDASEGIVELVRR 570


>gi|260436778|ref|ZP_05790748.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260414652|gb|EEX07948.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 597

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 146/229 (63%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LPL  + L  + A++REE
Sbjct: 5   MRVSRLLLVTLRDIPAEAEITSHQLLLRAGYIRRVGSGIYAYLPLMWRVLQKITAVVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA E  +P L  A+LW +SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 65  MNRAGAQETLLPQLHPAELWQKSGRWQGYTAGEGIMFHLEDRQGRELGIGPTHEEVITSL 124

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  +    + +Y  M
Sbjct: 125 AGELLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRETYGAM 184

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D
Sbjct: 185 DQAYRRIFERCGLDAVPVDADSGAIGGAASQEFMVTADAGEDLILISDD 233



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS--ENTDFDDIISLNSIVEQWTAPYA 257
           G IG DLS + +  A T E       D     + S     +  D+   N+    WTA   
Sbjct: 350 GSIGPDLSDDVLQGAKTWEPTFLRLADATASELGSFICGANKPDLHRFNT---SWTAIGQ 406

Query: 258 ATS--DVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             +  D+ N +  D     P+++    RGIEVGHIF  G KYS  M + F   +GK    
Sbjct: 407 KPTRLDLRNARAGDVCQHNPKSRLTEKRGIEVGHIFQLGRKYSQAMESRFTNENGKTEPF 466

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R+  A +E  HD  GI WP ++APF+  ++     D +     E +YA L
Sbjct: 467 WMGCYGIGVSRLAQAAVEQHHDDSGICWPTAIAPFEAIVVVANIQDDIQAQLGEALYAEL 526

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G DV  DD  E+ G +F  ADL+G P +++VG +  S+  VE+  R
Sbjct: 527 QAAGVDVLLDDRKERAGVKFKDADLIGIPWRIVVG-RDASEGTVELVCR 574


>gi|124022453|ref|YP_001016760.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|152112941|sp|A2C7N5|SYP_PROM3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123962739|gb|ABM77495.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 599

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/229 (48%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I + + GIY++LPL  + L  + AI++EE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGYIRRVTSGIYAYLPLMWRVLRKITAIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWRRSGRWQGYTAGEGLMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF         +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHACEADLAMTYTAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D
Sbjct: 181 DEAYQRIFSRCGLETVAVEADSGAIGGASSQEFMVTADAGEDLILISGD 229



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  + A F    G      MG YGIG  R+  A +E  HD  G+ 
Sbjct: 430 RGIEVGHIFQLGRKYSEALEACFTNDKGTQEPFWMGCYGIGISRLAQAAVEQHHDEAGMN 489

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF++ ++     D+V +   E++Y+ L     +V  DD  E+ G +F  ADL+G
Sbjct: 490 WPLAIAPFEVIIVVANIQDEVQQKLAEQLYSELQAADIEVLLDDRNERAGVKFKDADLIG 549

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            P +++VG +  +  +VE+  R +   E +S  +         + N+
Sbjct: 550 IPWRIVVG-RDAAKGQVELIQRSSRKVEILSATQAFTALVQEIAANQ 595


>gi|121612398|ref|YP_001000243.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|152016593|sp|A1VYQ2|SYP_CAMJJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87250412|gb|EAQ73370.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 569

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 165/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR     + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKKNEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 522 FELMGFPYALVIG-KGLENNEIELIQREDLVKELIKTDELM 561


>gi|153952152|ref|YP_001398429.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|166980114|sp|A7H4J9|SYP_CAMJD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152939598|gb|ABS44339.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 569

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/285 (40%), Positives = 164/285 (57%), Gaps = 16/285 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +          +  EN D+ 
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDI----------LICENCDYA 231

Query: 241 DIISLNSIV------EQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             I            E+  A YA+     N K  DSL +  + +A
Sbjct: 232 ANIEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKTNA 276



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 1/160 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+++G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNIKDEKTLEFANKLYEDLTELGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +L+GFP  +++G K + ++++E   R   ++E +  +E+
Sbjct: 522 FELMGFPYALVIG-KGLENNEIEFIQREGLVKELIKTDEL 560


>gi|148241975|ref|YP_001227132.1| prolyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|166980166|sp|A5GSC0|SYP_SYNR3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147850285|emb|CAK27779.1| Prolyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 600

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   L  L+++P +AEI SHKL+LR G I + + GIY++LPL  + L  V+AI+R+E
Sbjct: 1   MRVSALLLVTLRDDPAEAEIPSHKLLLRGGYIRRVASGIYAYLPLMWRVLRKVSAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P LQ A+LW  SGR+  Y      M  L DR D+ +  GPTHEEV+T +
Sbjct: 61  MDAAGALETLLPQLQPAELWQRSGRWSGYTAGEGIMFHLQDRQDRELGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + E     Y  M
Sbjct: 121 AADLLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASAEDLGRGYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL+ + ++A+SG IGG  S EF+V A+ GE  +  S D
Sbjct: 181 DQAYRRIFSRCGLQVVAVQADSGAIGGSASQEFMVTAEAGEDLILSSAD 229



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P  +  + RGIEVGHIF  G KYS  + ATF    G+D  + MG YGIG  R+  A +E 
Sbjct: 424 PSQQLQARRGIEVGHIFQLGLKYSEALGATFANEQGQDAPLWMGCYGIGVSRLAQAAVEQ 483

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD  G++WP  +APF++ ++   + +    +  E +Y +L + G DV  DD  E+ G +
Sbjct: 484 HHDSAGMVWPVPIAPFEVVIVIASSKEAQQVELAEDLYGQLQQAGVDVLLDDRNERAGVK 543

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           F  A+L+G P +++VG   V + +VE+  R +G +++
Sbjct: 544 FKDAELIGIPWRLVVGRGAV-NGQVELVERCSGEKQE 579


>gi|167005199|ref|ZP_02270957.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 568

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 165/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR     + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKKNEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 275



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 401 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 461 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 521 FELMGFPYALVIG-KGLENNEIELIQREDLVKELIKTDELM 560


>gi|189485415|ref|YP_001956356.1| prolyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|226701354|sp|B1H063|SYP_UNCTG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170287374|dbj|BAG13895.1| prolyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 569

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/263 (44%), Positives = 154/263 (58%), Gaps = 16/263 (6%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK  +P L+E P DA+I S KLM+R+GMI + + G Y  LPLG K L  V  IIR+E N 
Sbjct: 4   SKMLIPTLKEAPSDADIVSVKLMVRSGMIRKLASGFYELLPLGLKVLRKVENIIRQEMNS 63

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW+E+ R+++YGKE+ +L DR D      PT EEV+TD+ R  IK
Sbjct: 64  AGGQEVIFPLVFPKALWLETDRWNAYGKELFKLKDRKDAEFCLAPTAEEVVTDLIRKDIK 123

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+ LP   YQ   KFRDE+RPRFGVMRSREFLMKDAYSF       +  Y  MF +Y  
Sbjct: 124 SYKQLPVMLYQFGTKFRDEIRPRFGVMRSREFLMKDAYSFHADEADLEKYYKTMFDAYTN 183

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDF--------------- 227
           I  + G +   + A SG IGG  SHEF+VL DTGE ++ +CS  +               
Sbjct: 184 ICIKCGFQFRAVEAASGVIGGSFSHEFMVLTDTGEEEMTWCSCGYGANSAKTECLKIEQS 243

Query: 228 MDFPIPSENTDFDDIISLNSIVE 250
            + P+PSE     D+ ++  + +
Sbjct: 244 KEEPLPSEEIFTTDVCAIEDVAK 266



 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            +D+   K  D+ P  K+     +RGIE+GH F  G KYS  M+A++  A+GK+ ++ MG
Sbjct: 378 VADIRKVKRGDTCPRCKKEELKFSRGIEIGHTFKLGDKYSKSMNASYLDANGKEKFIIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R++AA+IE SHD  GIIW +++APF++ ++ +   D+  ++  EKIY  LS  
Sbjct: 438 CYGIGVTRILAAIIEQSHDDDGIIWTNNIAPFEVVIVPLNYADEKTKETTEKIYKELSSK 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G DV  DD  E+ G +F  ADL+G P ++ +  K +++  VE+K R  G
Sbjct: 498 GLDVLIDDRDERAGIKFKDADLIGIPYRITISEKNLANGNVELKARRDG 546


>gi|283954167|ref|ZP_06371692.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794446|gb|EFC33190.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 568

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/279 (40%), Positives = 167/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDAILPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E  +  +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLEREFELMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 181 YSQILQRMGLDFRAVEANSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             +      E+  A YA+     N K  +SL +  +++A
Sbjct: 237 KRVKKTCQDERPEANYASKFYTPNIKTIESLAQFFKINA 275



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD
Sbjct: 401 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGISRLLAVAIEANHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW   +APF + +I     D+   +   K+Y  L+K+G +V  DD  E+ G +   
Sbjct: 461 EKGCIWNKVLAPFVLEIIVSNIKDEKALEFANKLYEDLTKLGLEVLLDDRNERFGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  +++G K + +++VE+  R    +E + ++E++
Sbjct: 521 FELMGFPYALVIG-KGLENNEVELIQREALTKELVKIDELM 560


>gi|157165397|ref|YP_001466693.1| prolyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|171855061|sp|A7ZD35|SYP_CAMC1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112800481|gb|EAT97825.1| prolyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 566

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/225 (44%), Positives = 143/225 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK++ P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG+   D ++ +++EE
Sbjct: 1   MKFSKFYAPTTKEAPKDASLPSHQFLIRGGFVEQIGSGLYNYLPLGKIMHDKISRVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+S   + S +LW +SGRY+ +GKE+LR  DR D   +  PT+EE    + R 
Sbjct: 61  MNEAGALEVSFSVVTSGELWKQSGRYNVFGKELLRFKDRKDNDFVISPTNEEAAVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REF MKD YSF  + E  K  ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFTMKDGYSFHSSKEDLKREFDLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  + C +
Sbjct: 181 YSKIFTRLGLNFRAVEADSGAIGGSGSKEFMVLASNGEDDILCCE 225



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 1/143 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIEVGHIF  G KYS  M+AT+   +GK     MG YGIG  R++A +IE+SHD KG 
Sbjct: 404 SKGIEVGHIFQLGDKYSAAMNATYLDENGKVKPFLMGCYGIGISRLIAVMIEASHDEKGC 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IW    APF + +I     D+       ++Y  L K G  V  DD  E+ G +    +L+
Sbjct: 464 IWKKECAPFDVEIIISNLKDEAGVKFAFELYESLKKAGVSVIIDDRNERFGVKMNDFELI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           GFP  ++VG +F ++ KVE   R
Sbjct: 524 GFPYALLVGKEF-ANGKVEFITR 545


>gi|34557905|ref|NP_907720.1| prolyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
 gi|81832821|sp|Q7M8L1|SYP_WOLSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34483623|emb|CAE10620.1| PROLYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 570

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 147/221 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F P L+E P+DA + SH+ ++R G I Q   GIY++LPLG++ +D +  +++EE
Sbjct: 1   MRFSAFFAPTLKEAPKDATLKSHEYLIRGGYIQQVGSGIYNFLPLGKRVMDKIRQVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +  +  A+LW  SGR++ YGKE+LR  DR +   + GPTHEE++ ++ + 
Sbjct: 61  MDQAGAQEVMLGFVTPAELWRNSGRFEKYGKELLRFKDRKENDFVLGPTHEEMVVELAKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE+RPRFG+MR REF+MKD YSF          +  M  +
Sbjct: 121 YVKSYKQLPLHLYQIHLKFRDEIRPRFGLMRGREFVMKDGYSFHANEADLIREFELMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF RLGL    + A+SG IGG  S EF+VLA +GE  +
Sbjct: 181 YKRIFTRLGLDFRVVEADSGAIGGSGSKEFMVLAQSGEDTI 221



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           L E +    +GIEVGHIF  GT+YS P+ A F   +GK   + MG YGIG  R++AAVIE
Sbjct: 401 LCEGRLTYKKGIEVGHIFQLGTRYSEPLGANFLNPEGKSQPLVMGCYGIGVSRLLAAVIE 460

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             HD KG IW  S APF + ++     D   +   E +Y  L K G +V  DD  E+ GS
Sbjct: 461 QHHDEKGCIWTKSTAPFNLVIVVSNVKDPSQKAYAENLYNALQKEGIEVLLDDRDERYGS 520

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           + A  +LLG P  VIVG   + + +VE+ +R
Sbjct: 521 KMADFELLGIPYAVIVGKGLI-EGQVELVNR 550


>gi|88807669|ref|ZP_01123181.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88788883|gb|EAR20038.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 598

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/231 (46%), Positives = 151/231 (65%), Gaps = 3/231 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I +   GIY++LP+  + L  +NAI+R+E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIPSHQLLVRGGYIRRIGAGIYAYLPMMWRVLRKINAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P LQ ADLW  SGR+  Y      M  L DR ++ +  GPTHEEV+T++
Sbjct: 61  LDSLGALETLLPQLQPADLWERSGRWQGYTAGEGIMFHLEDRQNRQLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    +  + +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANQDDLEGTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +Y RIF R GL+++ + A+SG IGG  S E++V A+ GE  +  S D +
Sbjct: 181 AAAYARIFKRCGLEAVAVDADSGAIGGAASQEYMVTAEAGEDLILTSSDGL 231



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGIEVGHIF  G KYS  + A F  + G+   + MG YGIG  R+  A +E 
Sbjct: 421 PSQTLSACRGIEVGHIFQLGRKYSEALDARFTNSAGQQEALLMGCYGIGISRLAQAAVEQ 480

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD  GI WP  +APF++ ++  K  D       E +Y      G D   DD  E+ G +
Sbjct: 481 HHDDAGICWPVGIAPFQVIVVIAKMKDSNQVALGEGLYQSFLDAGIDALLDDRDERAGVK 540

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           F  ADL+G P +++VG +   D +VE+  R
Sbjct: 541 FKDADLIGIPWRIVVG-RDAGDGEVEVVER 569


>gi|291242165|ref|XP_002740982.1| PREDICTED: prolyl-tRNA synthetase (mitochondrial)(putative)-like
           [Saccoglossus kowalevskii]
          Length = 443

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 208/397 (52%), Gaps = 47/397 (11%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           S +LM+  G+I Q S G+Y  LPL  ++L+ +  +I EE +  G  ++S+P + +++LW 
Sbjct: 48  SQRLMMEHGLIRQSSPGVYHLLPLALRSLEKLIRLIDEEMHSIGGTKISMPCMTTSELWK 107

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFR 140
            + R+++ G E+ ++ DR+      GPTHEE +TD+  S  + S++ LP   YQI  KFR
Sbjct: 108 ATNRWETNGPELFKVEDRHGIQYCLGPTHEEAVTDLIASQGRLSHKQLPLRIYQITRKFR 167

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPRFG++R REF MKD Y+FD   E +  +Y  +  +Y               A++G
Sbjct: 168 DEKRPRFGLLRGREFYMKDMYTFDANTENAIKTYEAVNQAYF-------------SADTG 214

Query: 201 PIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            IGG +SHE+ + ADTGE ++ FC++    F    E  D D        +E  +  +  T
Sbjct: 215 SIGGSMSHEYHLPADTGEDELWFCNR--CGFGANKELGDID--------IEHCS--HCGT 262

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +             N   S +GIEVGH FY GTKYS   +A +  ++ +    +MG YG+
Sbjct: 263 T-------------NSLESRQGIEVGHAFYLGTKYSKVFNADYSDSNNQTRTTEMGCYGL 309

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLS 373
           G  R++AA IE S     I WP  +AP++I +I  K          +     ++I + L 
Sbjct: 310 GVTRILAAAIEVSSTDNEIRWPHLLAPYQIYIIPSKDGSKEAGAQPIAVGLYDQIVSHLP 369

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSK 409
            +  ++  DD     IG +   A  LG+P  +++G K
Sbjct: 370 HLKHEIILDDRNHMTIGKRMKEAKSLGYPFVIVIGKK 406


>gi|301300275|ref|ZP_07206484.1| proline--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852116|gb|EFK79791.1| proline--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 570

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 147/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYS 224



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+YS  + A     +G+   ++MG YGIG  R+++A++E  +D  GI
Sbjct: 402 TRGIEIGHIFQLGTRYSESLGADVLDENGRQVPMRMGCYGIGVSRLLSAIVEQHNDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +APF I ++ +   +   R+  EK+ A L   G  V  DD  E+ G +FA +DL+
Sbjct: 462 AWPREIAPFDIHVVPVNVKNDTQRELSEKVTAMLEDAGYQVLVDDRKERAGVKFADSDLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P+++ VG K   +  VEIK R  G + ++ LEE++N     F+
Sbjct: 522 GLPIRITVGKK-ADEGIVEIKLRQNGEKIEVKLEELLNSVKILFN 565


>gi|323481345|gb|ADX80784.1| prolyl-tRNA synthetase [Enterococcus faecalis 62]
          Length = 572

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 145/226 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ + AI+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|116075299|ref|ZP_01472559.1| prolyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116067496|gb|EAU73250.1| prolyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 600

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I +   GIY++LPL  + L  ++AI+++E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGYIRRVGSGIYAYLPLMWRVLRKISAIVQQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWERSGRWQGYTAGEGIMFHLEDRQGRQVGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    +     Y +M
Sbjct: 121 AGELLRSYRQLPVTVYQIQNKFRDEIRPRFGLMRGREFIMKDAYSFHADEQDLGRCYGEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            ++Y RIF R GL+++ + A+SG IGG  S EF+V A+ GE  +  S+D
Sbjct: 181 DLAYRRIFERCGLQAVAVEADSGAIGGAASQEFMVTAEAGEDLILTSED 229



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 4/166 (2%)

Query: 261 DVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N +  D     P+   V+ RGIEVGHIF  G KYS  M ATF  A+G      MG Y
Sbjct: 408 DLRNAQAGDRCLQSPDQTLVARRGIEVGHIFQLGRKYSQAMDATFTTAEGGQDAFWMGCY 467

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A +E  HD  GI WP ++APF++ ++     D       E++Y+ L   G 
Sbjct: 468 GIGVSRLAQAAVEQHHDKAGICWPLAIAPFQVVIVVANMQDDTQLQLGEQLYSTLQASGI 527

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           DV  DD  E+ G +F  ADL+G P +++VG +  ++ +VE+  R T
Sbjct: 528 DVLLDDRSERAGVKFKDADLIGIPWRLVVG-RDAANGQVELVERAT 572


>gi|270290317|ref|ZP_06196542.1| prolyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|270281098|gb|EFA26931.1| prolyl-tRNA synthetase [Pediococcus acidilactici 7_4]
          Length = 571

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 147/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P ++E P DAE+ SHK+MLR G I Q S G+Y++LP+  K ++ +  IIREE
Sbjct: 1   MKQSKILIPTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPMAYKVMEKIKRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MTAIDAVEMLTPAVLPAELWKKSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+K+RDE RPR+G++R REFLM DAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLTLYQIQMKYRDEDRPRYGLLRGREFLMSDAYSFHADEETLDESFRAFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R GLK   +  ++G +GG  S EF  +A  GE  +  S++
Sbjct: 181 YQNIFDRCGLKYREIVGDAGAMGGHDSKEFSAIASIGEDTIAYSEE 226



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GTKYS  + AT    +G+   V MG YGIG  R+++AV E   D  G++
Sbjct: 406 KGIEIGHIFKIGTKYSKALDATVLDQNGRAIPVIMGCYGIGVSRLLSAVSEQLADENGLV 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF + +I + A +       ++I   L   G DV  DD  E+ G +FA +DL+G
Sbjct: 466 WPKNIAPFDVHVIPVNAKNDEQMQVADQINTELVAAGYDVLIDDRKERAGVKFADSDLIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PL+V VG K  S+  VE+K R TG   ++ L E+ N
Sbjct: 526 IPLRVTVGKK-ASEGIVEVKLRQTGETVEVKLAELKN 561


>gi|304384864|ref|ZP_07367210.1| proline--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|304329058|gb|EFL96278.1| proline--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 571

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 147/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P ++E P DAE+ SHK+MLR G I Q S G+Y++LP+  K ++ +  IIREE
Sbjct: 1   MKQSKILIPTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPMAYKVMEKIKRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MTAIDAVEMLTPAVLPAELWKKSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+K+RDE RPR+G++R REFLM DAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLTLYQIQMKYRDEDRPRYGLLRGREFLMSDAYSFHADEETLDESFRAFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R GLK   +  ++G +GG  S EF  +A  GE  +  S++
Sbjct: 181 YQNIFDRCGLKYREIVGDAGAMGGHDSKEFSAIASIGEDTIAYSEE 226



 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GTKYS  + AT    +G+   V MG YGIG  R+++AV E   D  G++
Sbjct: 406 KGIEIGHIFKIGTKYSKALDATVLDQNGRAIPVIMGCYGIGVSRLLSAVSEQLADENGLV 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF + +I + A +       ++I   L   G DV  DD  E+ G +FA +DL+G
Sbjct: 466 WPKNIAPFDVHVIPVNAKNDEQMQVADQINTELVAAGYDVLIDDRKERAGVKFADSDLIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PL+V VG K  S+  VE+K R TG   ++ L E+ N
Sbjct: 526 IPLRVTVGKK-ASEGIVEVKLRQTGETVEVKLAELKN 561


>gi|227890630|ref|ZP_04008435.1| prolyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867568|gb|EEJ74989.1| prolyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|300214372|gb|ADJ78788.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 571

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 147/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYS 224



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+YS  + A     +G+   ++MG YGIG  R+++A++E  +D  GI
Sbjct: 403 TRGIEIGHIFQLGTRYSESLGADVLDENGRQVPMRMGCYGIGVSRLLSAIVEQHNDENGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +APF I ++ +   +   R+  EK+ A L   G  V  DD  E+ G +FA +DL+
Sbjct: 463 AWPREIAPFDIHVVPVNVKNDTQRELSEKVTAMLEDAGYQVLVDDRKERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P+++ VG K   +  VEIK R  G + ++ LEE++N     F+
Sbjct: 523 GLPIRITVGKK-ADEGIVEIKLRQNGEKIEVKLEELLNSVKILFN 566


>gi|284925806|gb|ADC28158.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 569

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/279 (40%), Positives = 166/279 (59%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + S+  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSYIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+   + N +  
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICEN-CDY---AANVEAA 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    E+  A YA+     N K  DSL +  +++A
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA 276



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A   E+SHD
Sbjct: 402 KLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVATEASHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +   
Sbjct: 462 EKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMND 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L+GFP  ++VG K +  +++E+  R   I+E +  +E++
Sbjct: 522 FELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELM 561


>gi|90961542|ref|YP_535458.1| prolyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|114152204|sp|Q1WUG0|SYP_LACS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|90820736|gb|ABD99375.1| Prolyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 571

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 147/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYS 224



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+YS  + A     +G+   ++MG YGIG  R+++A++E  +D  GI
Sbjct: 403 TRGIEIGHIFQLGTRYSESLGADVLDENGRQVPMRMGCYGIGVSRLLSAIVEQHNDENGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +APF I ++ +   +   R+  EK+ A L   G  V  DD  E+ G +FA +DL+
Sbjct: 463 AWPREIAPFDIHVVPVNVKNDTQRELSEKVTAMLEDAGYQVLVDDRKERAGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P+++ VG K   +  VEIK R  G + ++ LEE++N     F+
Sbjct: 523 GLPIRITVGKK-ADEGIVEIKLRQNGEKIEVKLEELLNSVKILFN 566


>gi|72161176|ref|YP_288833.1| prolyl-tRNA synthetase [Thermobifida fusca YX]
 gi|114152272|sp|Q47RV7|SYP_THEFY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71914908|gb|AAZ54810.1| prolyl-tRNA synthetase, bacterial [Thermobifida fusca YX]
          Length = 582

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 105/218 (48%), Positives = 145/218 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG+  L+NV A++REE
Sbjct: 3   LRMSNLFLRTLREDPADAEVPSHKLLVRGGFVRRTAPGVYSWLPLGKIVLENVAAVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P L   + +  +GR+  YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MNRIGAQEVLLPALLPREYYEATGRWTEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKG 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P   YQIQ KFRDE RPR G++R REF MKD+YSFDL  EG + SY     +
Sbjct: 123 EYTSYKDYPVILYQIQEKFRDEARPRAGILRGREFHMKDSYSFDLDDEGLQRSYEAHRQA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+RIF RLGL+ + ++A SG +GG  S EF+ +A TGE
Sbjct: 183 YIRIFDRLGLEYVIVKATSGAMGGSASEEFLAIAPTGE 220



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 6/171 (3%)

Query: 269 DSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ K    +ARGIE+GH+F  G KY+   S    G DGK   + MGSYGIG  RVVA
Sbjct: 407 DPAPDGKGTLYTARGIEIGHVFQLGRKYTDAFSLDALGPDGKPVRITMGSYGIGVSRVVA 466

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MG 385
           A++E SHD +GIIWP  VAP  + ++     DQV  +   +I   L   G  V  DD  G
Sbjct: 467 AIVEQSHDERGIIWPREVAPADVHVVGTGKGDQV--EVALRISQELVDRGVRVLVDDRKG 524

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              G +F  A+LLG P  +IVG + +++  VE++ R +G R ++S++ V++
Sbjct: 525 VSPGVKFTDAELLGVPTVLIVG-RGLANGVVELRDRASGDRSEVSVDTVVD 574


>gi|317495744|ref|ZP_07954109.1| prolyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914197|gb|EFV35678.1| prolyl-tRNA synthetase [Gemella moribillum M424]
          Length = 566

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/256 (42%), Positives = 156/256 (60%), Gaps = 11/256 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  K + N+  +IREE
Sbjct: 1   MRQSRTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATKVIQNIERVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P LQS D W ESGR+   G E++RL DR        PT EE++     +
Sbjct: 61  HDKIGAVELLMPLLQSEDYWKESGRWYKMGDELMRLKDRKGAGYALSPTAEEIICQTVNN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  +PE  + +Y   + +
Sbjct: 121 MLTSYKQLPMNLYQIQTKFRDEMRPRLGLLRGKEFIMKDGYSFHDSPESLRETYLDYYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE          D    +E +D+ 
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEIGE----------DTIAYTEESDYA 230

Query: 241 DIISLNSIVEQ-WTAP 255
             I   ++VEQ +T P
Sbjct: 231 ANIETAAVVEQNYTIP 246



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  G  YS  M+ T+  A+G+ ++  MG YGIG  RV++A+IE  +D KGI
Sbjct: 403 AKGIEVGQVFELGKGYSEAMNITYLDANGRANHFYMGCYGIGVSRVISAIIEQHNDEKGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  VAPF++ L+ +    Q   +  EK+YA L+  G  V +DD  E+ G +F  ADL+
Sbjct: 463 IWPKEVAPFQVHLVCVDVKKQEQLELSEKLYAELTSAGYTVLYDDRAERAGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PLQV+VG K  ++  VE+K R T  + D S+ EV++
Sbjct: 523 GIPLQVVVGKK-ATEGIVEVKERKTLEKVDTSITEVLS 559


>gi|241888520|ref|ZP_04775828.1| prolyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241864787|gb|EER69161.1| prolyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 572

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 179/315 (56%), Gaps = 20/315 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R+SK F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  + +  +  +IREE
Sbjct: 7   VRQSKTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATRVIQKIEKVIREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P LQS + W +SGR+D  G+E++R+ DR        PT EE+++    +
Sbjct: 67  HSKIGAAELLMPILQSDEYWKKSGRWDKMGEELIRVTDRKKAGYALSPTAEEIVSQTVNN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKDAYSF  +PE  + +Y   + +
Sbjct: 127 MVTSYKQLPMNLYQIQTKFRDEIRPRLGLLRCKEFIMKDAYSFHDSPESLRETYKDYYQA 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE          D  + +E +D+ 
Sbjct: 187 YSSIFDRFELKYRAVQADSGNIGGSYTHEFQALAEVGE----------DTIVYTEESDYS 236

Query: 241 DIISLNSIVEQ-WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I   ++VEQ +T P   T     E+     P+ + +           + G + +  M 
Sbjct: 237 ANIETAAVVEQNYTMP---TGFEKKERSLLETPDQQSIDDVAA------FCGVEVNRAMK 287

Query: 300 ATFKGADGKDHYVQM 314
           A    ADG+ + V M
Sbjct: 288 ALALKADGEFYLVLM 302



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 5/159 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  G  YS  M  T+  A+G+ ++  MG YGIG  R ++A+IE  +D KGI
Sbjct: 409 AKGIEVGQVFELGKGYSEAMDVTYLDANGRANHFYMGCYGIGVTRCISAIIEQHNDEKGI 468

Query: 339 IWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  VAP+++ L  +++K  DQV     +++YA+L+  G +V +DD  E+ G +F  AD
Sbjct: 469 IWPKEVAPYQVHLVCVDVKKEDQV--KLSDELYAQLTAAGYEVLYDDRAERAGVKFNDAD 526

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G PLQV+VG K   +  VE+K R T  + D  + +V+
Sbjct: 527 LIGIPLQVVVGKK-AGEGIVEVKERQTLEKVDTQVVDVL 564


>gi|330718639|ref|ZP_08313239.1| prolyl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 572

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 107/230 (46%), Positives = 146/230 (63%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH L+L+ G I   + G++S+LPL Q+ L+ + AI+REE
Sbjct: 1   MKQSKLLMPTLREVPADAEVRSHALLLKAGYIRPVAAGMFSYLPLAQRVLNKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EMSVP +  A+LW ESGRY +YG  + +  +R ++  I GPTHEE  T + R 
Sbjct: 61  MAKIDANEMSVPEILPAELWQESGRYATYGPALYKFKNRQNRDFILGPTHEETFTQLMRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +Y  M  +
Sbjct: 121 DIKSYKKLPLLVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDDAYRAMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  IF R+GL    +  ++G +GG  S EF   AD GE  +    D  D+
Sbjct: 181 YTNIFDRVGLTYRAIVGDAGAMGGSDSKEFSAPADAGE-DIIAYSDATDY 229



 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 1/162 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K V  +GIE+GHIF  GT+YS  + A     +G+   + MGSYGIG  R+++A+ E   D
Sbjct: 402 KLVFTKGIEIGHIFKLGTRYSEALGAQVLDKNGRQTDMIMGSYGIGISRLLSAISEQKAD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G++WP SVAPF + ++ I   D        ++ +     G +V  DD  E+ G +FA 
Sbjct: 462 EDGLVWPTSVAPFDVHIVPINLKDTEQARVTRQLESEFLAQGLEVLVDDRKERAGVKFAD 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ADL+G P+++ VG K   D  VE+K R +    +M + EV++
Sbjct: 522 ADLIGLPIRITVGKKAEEDI-VEVKVRASNTNIEMRVSEVVD 562


>gi|15674109|ref|NP_268284.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|81856528|sp|Q9CDT4|SYP_LACLA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12725184|gb|AAK06225.1|AE006441_3 prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
          Length = 616

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 144/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 14/171 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R+++A++E        
Sbjct: 440 ARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSRLLSAILEQFARIYVE 499

Query: 332 ---SHDGK---GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                + K    I +P  +APF I L+ +   D+   +   ++  +L   G  V  DD  
Sbjct: 500 KTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEEKLRGKGYQVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++ +E++N
Sbjct: 560 ERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEINKDELVN 609


>gi|326407711|gb|ADZ64782.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 616

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 144/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 14/171 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R+++A++E        
Sbjct: 440 ARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSRLLSAILEQFARIYVE 499

Query: 332 ---SHDGK---GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                + K    I +P  +APF I L+ +   D+   +   ++  +L   G  V  DD  
Sbjct: 500 KTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEEKLRGKGYQVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++ +E++N
Sbjct: 560 ERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEINKDELVN 609


>gi|281492788|ref|YP_003354768.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|281376440|gb|ADA65926.1| Prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
          Length = 616

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 144/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 14/171 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R+++A++E        
Sbjct: 440 ARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSRLLSAILEQFARIYVE 499

Query: 332 ---SHDGK---GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                + K    I +P  +APF I L+ +   D+   +   ++  +L   G  V  DD  
Sbjct: 500 KTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEEKLRGKGYQVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++ +E++N
Sbjct: 560 ERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEINKDELVN 609


>gi|284929738|ref|YP_003422260.1| prolyl-tRNA synthetase, family II [cyanobacterium UCYN-A]
 gi|284810182|gb|ADB95879.1| prolyl-tRNA synthetase, family II [cyanobacterium UCYN-A]
          Length = 606

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK     L+E+P +AEI SHKL+LR+  I + S GIYS+LPL  + L   + IIREE
Sbjct: 1   MQLSKVLFVTLREDPAEAEIISHKLLLRSCYIRRVSSGIYSYLPLMWRVLRKTSQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  G  E  +P LQ +DLW ESGR+ +Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNSIGGQECLLPQLQISDLWEESGRWKTYTEAEGIMFSLIDRQNRELALGPTHEEVVTSI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  + SY+ +P   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSFD   E  + +Y+ +
Sbjct: 121 VRDMVVSYKQMPLNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFDENLENLQKNYDMV 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  I  R GL    + A+SG IGG  S EF+VL D GE ++  ++D
Sbjct: 181 SQAYCNILKRCGLSFKVVEADSGTIGGLASQEFMVLTDVGEDEILYTED 229



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 8/189 (4%)

Query: 261 DVHNEKLFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           DV   K  D + EN +   +S +G+EVGH+F  GTKYS  M ATF   +G++  + MG Y
Sbjct: 413 DVRRAKEGDKISENSQERLISKKGVEVGHVFQLGTKYSKKMKATFTDKNGEEKPIVMGCY 472

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKV 375
           GIG  R+V + +E +HD  GIIWP ++AP+   +I  N+K   Q+  +  EKIY  L+ +
Sbjct: 473 GIGVSRLVQSAVEQNHDKHGIIWPLAIAPYHAIIIVPNVKEKQQM--EIAEKIYYDLNSI 530

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   DD  E+IGS+F  A+L+G P Q++ G + +   KVE+  R T   +++ +EE+ 
Sbjct: 531 GIETILDDRTERIGSKFKDAELIGIPYQIVTG-RTLKFGKVEVVDRKTKNSQEVIIEELP 589

Query: 436 NYASHRFSN 444
                 F N
Sbjct: 590 KLFHEFFKN 598


>gi|312374940|gb|EFR22399.1| hypothetical protein AND_15306 [Anopheles darlingi]
          Length = 467

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 225/439 (51%), Gaps = 40/439 (9%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           LML  G++ Q   G    LP+ Q+A+     +I        A  +++P L  A+LW +SG
Sbjct: 35  LMLEQGLMRQAGNGTLHVLPVLQRAVQKAIDLIDRHMQSVDAQRITLPVLTPAELWRQSG 94

Query: 85  RYDSYG--KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRD 141
           R +      E+L+  DR+ K  I GPTHEE +T +  +    SYR  P   YQI  KFRD
Sbjct: 95  RLNESDPPTELLQTKDRHGKMQILGPTHEESITALMAAIAPVSYRQFPLRLYQISTKFRD 154

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E++PRFG+MR++EFLMKD Y+FD+ P   + +Y  +  +Y R+F  +G+  + +  +SG 
Sbjct: 155 EMKPRFGLMRAKEFLMKDLYTFDVDPHRCRQTYETVNAAYGRLFSEIGVPFVKVAGDSGT 214

Query: 202 IGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           +GG LSHE+   ++ GE ++  C +      + + +     I +L           A+TS
Sbjct: 215 MGGSLSHEYHFPSEVGEDELLQCDQ----CGVRTNSEHLQKICALCDRCGAGKESTASTS 270

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
               +              RGIEVGH F    +Y+ P+ A+    +GK   +QMG YGIG
Sbjct: 271 SFERQ--------------RGIEVGHAFILEDRYTKPLGASCLQPNGKPTPLQMGCYGIG 316

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCRDACEKIYARLSKV-- 375
             R++AA +E     K + WP ++AP+++ ++  KA    + +     +++Y  L     
Sbjct: 317 VTRLIAASLEVLSSEKELRWPLALAPYRVCIVTPKAGSKEESLVSPWVDRLYNLLHTAVP 376

Query: 376 GC--DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS---KVEIKHRLTGIREDM 429
           GC  DV  DD  +  IG +   A  +G+PL V++G+K  + +   + E+ +   G  +D+
Sbjct: 377 GCQGDVIVDDRNQLTIGKRVLDARRMGYPLIVVIGAKAANPAGSERFELHNLHAGTEQDL 436

Query: 430 S-------LEEVINYASHR 441
           S       + +V++   HR
Sbjct: 437 SYTDLAAAIGDVLSTTHHR 455


>gi|332295560|ref|YP_004437483.1| Prolyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332178663|gb|AEE14352.1| Prolyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 572

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 148/225 (65%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   L+E P DAE  SH L+LR G I + S GIY++LPL ++ L  +  I+REE
Sbjct: 1   MKLSKLFFKTLKEVPGDAEAISHVLLLRAGYIRRLSSGIYTYLPLAKRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                + E+ +P LQ  ++W  SGR+  YG E++R  DR+DK    GPTHEEV+TD+   
Sbjct: 61  MININSQELLLPALQPREIWEISGRWKKYGLELMRFKDRHDKDYALGPTHEEVITDLINR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + +QIQ KFRDE+RPRFG+MR+REF+MKDAYSF    E    +Y  MF +
Sbjct: 121 EVNSYKQLPISVFQIQTKFRDEIRPRFGLMRTREFIMKDAYSFHRNEEDLDKTYWDMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y +I  R+GL    + A+SG IGG +SHEF+VL   GE ++ +CS
Sbjct: 181 YEKILTRMGLNFKSVEADSGAIGGSVSHEFMVLTPFGEDKILYCS 225



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/192 (38%), Positives = 107/192 (55%), Gaps = 10/192 (5%)

Query: 261 DVHNEKLFD----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           D + +K+FD          S   ++ + + G E GH+F  GTKYS PM A FK  DGK+ 
Sbjct: 377 DFYTDKIFDLRISKAGEFCSRCGSRLLESTGSEAGHVFKLGTKYSEPMKAYFKDEDGKEK 436

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             +MG YGIG  R++A V+E  HD  GIIWP+S++P+++ +I    +D+      E I+ 
Sbjct: 437 PFEMGCYGIGISRLLAIVVEQHHDEFGIIWPNSISPYQVIIIPTNINDKNQLTTSEMIFY 496

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G  V +DD  E+ G +F  ADLLG P+++I+GS F     VEIK R  G    + 
Sbjct: 497 ELKERGISVLFDDRDERAGVKFKDADLLGIPIKIIIGSHFSKSGLVEIKVRRDGSSNLVP 556

Query: 431 LEEVINYASHRF 442
            +E   Y S + 
Sbjct: 557 PDEASVYVSLKL 568


>gi|126659940|ref|ZP_01731064.1| prolyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126618804|gb|EAZ89549.1| prolyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 598

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 146/219 (66%), Gaps = 3/219 (1%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE N  GA E  
Sbjct: 6   LREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREEMNAAGAQECL 65

Query: 71  VPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           +P LQ ++LW ESGR+++Y K    M  L DR ++ +  GPTHEEV+T + +  I+SYR 
Sbjct: 66  LPQLQPSELWKESGRWETYTKAEGIMFSLIDRQERELGLGPTHEEVITTVAKDMIRSYRQ 125

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY+ M  +Y  I  R
Sbjct: 126 LPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNENEASLQKSYDAMDQAYRNIISR 185

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            GL    + A+SG IGG  S EF++LA+ GE +V  ++D
Sbjct: 186 CGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTED 224



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 5/146 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVGHIF  GTKYS  M ATF   +G++  + MG YG+G  R+  A +E S+D  G
Sbjct: 428 SARGIEVGHIFQLGTKYSEAMGATFTDENGEEKPIVMGCYGVGVSRLAQAAVEQSYDKDG 487

Query: 338 IIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           IIWP ++AP+ + +I  NIK  +Q+  +  E +Y  L+K+G +   DD  E+ G +F  A
Sbjct: 488 IIWPVAIAPYHVIIIVPNIKDKNQI--EVAENLYNELNKIGIETMLDDRDERAGVKFKDA 545

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           DL+G P +V+ G + +   KVE+  R
Sbjct: 546 DLIGIPYRVVTG-RSLKAGKVEVVTR 570


>gi|57167588|ref|ZP_00366728.1| prolyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|57020710|gb|EAL57374.1| prolyl-tRNA synthetase [Campylobacter coli RM2228]
          Length = 569

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 168/285 (58%), Gaps = 16/285 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MKFSKLYAPSLKEAPKDATLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIRTIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFVTPATLWQESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     ++ M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLTREFDLMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y +I  R+GL+   + A+SG IGG  S EF+VLA  GE  +          +  EN D+ 
Sbjct: 182 YSQILQRMGLEFRAVDADSGAIGGSGSKEFMVLAKNGEDDI----------LICENCDYA 231

Query: 240 ---DDIISLNSIVEQW--TAPYAATSDVHNEKLFDSLPENKRVSA 279
              +  I  N   E+    A YA+     + K  ++L +  +++A
Sbjct: 232 ANVEAAIRANKTCEEERPEANYASKFHTPDVKTIEALAQFFKINA 276



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG 
Sbjct: 406 SKGIEVGHIFKLGQKYSKAMNANFLDENGKSKPFYMGCYGIGVSRLLAVAIEANHDEKGC 465

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IW  ++APF + +I     D+   +   K+Y  LS  G +V  DD  E+ G +    +L+
Sbjct: 466 IWNKTLAPFTLEIIISNIKDEKSLEFATKLYEDLSNAGIEVLLDDRNERFGVKMNDFELM 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           GFP  ++VG     D ++E   R T  ++ +S +E  ++
Sbjct: 526 GFPYALVVGKGLEKD-ELEFIDRKTLEKKIISSKEAFDF 563


>gi|331701343|ref|YP_004398302.1| Prolyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128686|gb|AEB73239.1| Prolyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 569

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 145/224 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P+ AE  SH++++R G I Q S G+Y++LPL  + L+ +  IIR+E
Sbjct: 1   MKQSQMLIPTLKETPKGAEALSHQMLVRGGYIRQISAGMYAYLPLAYRVLNKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  ADLW ESGRYD+YG E+ +  +R++   I GPTHEE  T + R 
Sbjct: 61  MEKTSAHEMLMPDILPADLWKESGRYDTYGPELFKFKNRHETDFILGPTHEETFTALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF    E    +YN M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDENRPRYGLLRSREFIMKDAYSFATNDEDLDKTYNAMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S
Sbjct: 181 YRNIFDRIGLKYKVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYS 224



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 96/165 (58%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E + D  G++
Sbjct: 404 RGIEIGHIFKLGTRYSKSLKANVLDENGRAVPVIMGSYGIGVSRLLSAISEQNADENGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + +I I A   V  D   +I A+L+     V  DD  E+ G +FA +DL+G
Sbjct: 464 WPKAVAPFDVHVIPINAKKAVQMDLAHQIEAQLTADQLQVLVDDRKERAGVKFADSDLMG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            PL+V +G K   +  VEIK R TG   ++++ E+ +       N
Sbjct: 524 IPLRVTIGKK-AEEGIVEIKIRKTGETVEVNVTELSDTIKKMLKN 567


>gi|194477323|ref|YP_002049502.1| prolyl-tRNA synthetase [Paulinella chromatophora]
 gi|171192330|gb|ACB43292.1| prolyl-tRNA synthetase [Paulinella chromatophora]
          Length = 604

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   L  L+++P +AE+ SHKL+LR G I + + GIY++LPL  + L  +++ +REE
Sbjct: 1   MRVSHLMLVTLRDDPAEAEVISHKLLLRAGYIRRVTIGIYAYLPLLWRVLKKISSCVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
               GAIE+ +P LQ AD+W  S R+  Y +    M  L DR  + +  GPTHEEV+T++
Sbjct: 61  MTSAGAIELLMPQLQPADIWQLSKRWAGYTQGEGIMFNLKDRQGRELALGPTHEEVVTNL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
             + IKSYR LP T YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  +    K SY++M
Sbjct: 121 VDNLIKSYRQLPCTLYQIQTKFRDEIRPRFGLMRSREFVMKDAYSFHSSEIDLKVSYDRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            + Y  IF R GL  + + A+SG IGG  S EF+V A+ GE  +  S+D
Sbjct: 181 DLGYRNIFRRCGLNVVAVEADSGSIGGAASQEFMVTAEAGEDLILISED 229



 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 8/184 (4%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A  A    +HN     +L EN     RGIEVGHIF  G KYS+ ++A +    G      
Sbjct: 414 AAQANDQCIHNP--IYTLTEN-----RGIEVGHIFRLGHKYSIALNANYTNEIGNQEPFW 466

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R+  A +E  HD KGI WP S+APF++ ++ +   D++ R   E +Y+ + 
Sbjct: 467 MGCYGIGISRLSQAAVEQHHDQKGICWPLSIAPFEVIIVIVSIQDEIQRTLGEALYSIMK 526

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DV  DD  ++ G +F  ADL+G P Q+++G   + ++++E+  R+T   E +    
Sbjct: 527 AARVDVLIDDRQDRAGVKFKDADLIGIPWQIVIGRGAI-NNQIELVERITSRSEQLDAGY 585

Query: 434 VINY 437
           ++ Y
Sbjct: 586 LVKY 589


>gi|116495061|ref|YP_806795.1| prolyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122263522|sp|Q038L9|SYP_LACC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116105211|gb|ABJ70353.1| Prolyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|327382602|gb|AEA54078.1| Prolyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327385800|gb|AEA57274.1| Prolyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 575

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 146/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYS 224



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+
Sbjct: 403 TRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+
Sbjct: 463 VWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGYSVLVDDRNERPGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL+V VG K V D  VE+K R TG   ++  EE+I+
Sbjct: 523 GVPLRVTVGKKAV-DEIVELKLRKTGETIEVKKEELIS 559


>gi|301066624|ref|YP_003788647.1| prolyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300439031|gb|ADK18797.1| Prolyl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 575

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 146/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYS 224



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+
Sbjct: 403 TRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+
Sbjct: 463 VWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEDAGYSVLVDDRNERPGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL+V VG K V D  VE+K R TG   ++  EE+I+
Sbjct: 523 GVPLRVTVGKKAV-DEIVELKLRKTGETIEVKKEELIS 559


>gi|227534928|ref|ZP_03964977.1| prolyl-tRNA synthetase (proline--tRNA ligase) (ProRS)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187684|gb|EEI67751.1| prolyl-tRNA synthetase (proline--tRNA ligase) (ProRS)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 575

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 146/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYS 224



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+
Sbjct: 403 TRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+
Sbjct: 463 VWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGYSVLVDDRNERPGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL+V VG K V D  VE+K R TG   ++  EE+I+
Sbjct: 523 GVPLRVTVGKKAV-DEIVELKLRKTGETIEVKKEELIS 559


>gi|191638564|ref|YP_001987730.1| prolyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|190712866|emb|CAQ66872.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Lactobacillus casei BL23]
          Length = 579

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 146/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 5   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 65  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 125 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S
Sbjct: 185 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYS 228



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+
Sbjct: 407 TRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGL 466

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+
Sbjct: 467 VWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGYSVLVDDRNERPGVKFADSDLI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL+V VG K V D  VE+K R TG   ++  EE+I+
Sbjct: 527 GVPLRVTVGKKAV-DEIVELKLRKTGETIEVKKEELIS 563


>gi|315032880|gb|EFT44812.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315150170|gb|EFT94186.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0012]
          Length = 572

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|229545199|ref|ZP_04433924.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256853721|ref|ZP_05559086.1| prolyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|257079587|ref|ZP_05573948.1| prolyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294779463|ref|ZP_06744861.1| proline--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|307270862|ref|ZP_07552149.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307287732|ref|ZP_07567775.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|307291052|ref|ZP_07570938.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|229309744|gb|EEN75731.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256710664|gb|EEU25707.1| prolyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256987617|gb|EEU74919.1| prolyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294453469|gb|EFG21873.1| proline--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|306497901|gb|EFM67432.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|306501470|gb|EFM70773.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306512775|gb|EFM81420.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|315030982|gb|EFT42914.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 572

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|229549443|ref|ZP_04438168.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255972147|ref|ZP_05422733.1| prolyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|257421971|ref|ZP_05598961.1| prolyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|312953422|ref|ZP_07772262.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|229305680|gb|EEN71676.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255963165|gb|EET95641.1| prolyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|257163795|gb|EEU93755.1| prolyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|310628631|gb|EFQ11914.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315152090|gb|EFT96106.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155317|gb|EFT99333.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315159106|gb|EFU03123.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|327535671|gb|AEA94505.1| proline--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 572

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|268679949|ref|YP_003304380.1| prolyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617980|gb|ACZ12345.1| prolyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 567

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 145/221 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  ++ P+DA + SH+ ++R G I Q   G+Y++LP+G+  LD +  +++EE
Sbjct: 1   MKFSKLYAPTTKDAPKDATLPSHQYLVRGGFIVQVGSGLYNFLPMGKIVLDKIRNVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +  +  A+LW +SGRYD +GKE+ R+ DR +   + GPTHEEV+ DI R+
Sbjct: 61  MDETGAQEIQMGVVSPAELWKQSGRYDVFGKELCRIKDRKENEFVLGPTHEEVVVDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF+MKD YSF       K  ++ M  +
Sbjct: 121 RINSYKQLPLHLYQITTKFRDEARPRFGLLRGREFIMKDGYSFHEDEASMKAEFDVMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y +IF+RLGL    + A+SG IGG  S EF+VLA  GE  +
Sbjct: 181 YTKIFNRLGLDFRAVEADSGAIGGSGSKEFMVLAQNGEDDI 221



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 81/144 (56%), Gaps = 1/144 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KY+  M ATF   +GK     MG YG+G  R+VA +IE+SHD KG I
Sbjct: 405 KGIEVGHIFQLGQKYAKAMGATFLDKNGKAQPFYMGCYGVGVSRLVAVMIEASHDEKGCI 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W    AP+ + +I   + D+      E+IY+ L +    V  DD  E+ G +    +L+G
Sbjct: 465 WNKQTAPYLLDIIVSNSKDEAQSAYAEEIYSALMQERLSVLLDDRNERFGFKMKDYELIG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLT 423
            P  +IVG K + +  VEI  R T
Sbjct: 525 LPYALIVG-KELEEGFVEIVERKT 547


>gi|257084658|ref|ZP_05579019.1| prolyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256992688|gb|EEU79990.1| prolyl-tRNA synthetase [Enterococcus faecalis Fly1]
          Length = 572

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|257087410|ref|ZP_05581771.1| prolyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995440|gb|EEU82742.1| prolyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|315025439|gb|EFT37371.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 572

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D  GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADEHGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|315164831|gb|EFU08848.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1302]
          Length = 572

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|227553916|ref|ZP_03983963.1| prolyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|255975215|ref|ZP_05425801.1| prolyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256617163|ref|ZP_05474009.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256763073|ref|ZP_05503653.1| prolyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256961317|ref|ZP_05565488.1| prolyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256963555|ref|ZP_05567726.1| prolyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257082033|ref|ZP_05576394.1| prolyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257416590|ref|ZP_05593584.1| prolyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257419837|ref|ZP_05596831.1| prolyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|293383602|ref|ZP_06629512.1| proline--tRNA ligase [Enterococcus faecalis R712]
 gi|293387285|ref|ZP_06631842.1| proline--tRNA ligase [Enterococcus faecalis S613]
 gi|307271494|ref|ZP_07552766.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277205|ref|ZP_07558309.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307285834|ref|ZP_07565968.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312899806|ref|ZP_07759125.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312906152|ref|ZP_07765164.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312909497|ref|ZP_07768352.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|227176902|gb|EEI57874.1| prolyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|255968087|gb|EET98709.1| prolyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256596690|gb|EEU15866.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256684324|gb|EEU24019.1| prolyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256951813|gb|EEU68445.1| prolyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256954051|gb|EEU70683.1| prolyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256990063|gb|EEU77365.1| prolyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257158418|gb|EEU88378.1| prolyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|257161665|gb|EEU91625.1| prolyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|291079114|gb|EFE16478.1| proline--tRNA ligase [Enterococcus faecalis R712]
 gi|291083322|gb|EFE20285.1| proline--tRNA ligase [Enterococcus faecalis S613]
 gi|295113413|emb|CBL32050.1| prolyl-tRNA synthetase, family II [Enterococcus sp. 7L76]
 gi|306502595|gb|EFM71862.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306506135|gb|EFM75301.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306511766|gb|EFM80764.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|310627798|gb|EFQ11081.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311290170|gb|EFQ68726.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311293056|gb|EFQ71612.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315146006|gb|EFT90022.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315146660|gb|EFT90676.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315161730|gb|EFU05747.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315166430|gb|EFU10447.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315170318|gb|EFU14335.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315173646|gb|EFU17663.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1346]
 gi|315574384|gb|EFU86575.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315580142|gb|EFU92333.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 572

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|33863527|ref|NP_895087.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|81834835|sp|Q7TUU4|SYP_PROMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33640976|emb|CAE21434.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 599

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I + + GIY++LPL  + L  + +I++EE
Sbjct: 1   MRVSRLMLVTLRDIPADAEIASHQLLLRGGYIRRVTSGIYAYLPLMWRVLRKITSIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWRRSGRWQGYTAGEGLMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF         +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHSCEADLAMTYRAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D
Sbjct: 181 DEAYQRIFSRCGLETVAVEADSGAIGGASSQEFMVTADAGEDLILISGD 229



 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  + A F    G      MG YGIG  R+  A +E  HD  G+ 
Sbjct: 430 RGIEVGHIFQLGRKYSEALEACFTNDQGTQEPFWMGCYGIGISRLAQAAVEQHHDEAGMK 489

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF++ ++     D+V +   E++Y+ L     +   DD  E+ G +F  ADL+G
Sbjct: 490 WPLAIAPFEVIIVVANIQDEVQQKLAEQLYSELQAADIEALLDDRTERAGVKFKDADLIG 549

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
            P +V+VG +  +  +VE+  R
Sbjct: 550 IPWRVVVG-RDAAKGQVELIQR 570


>gi|256956661|ref|ZP_05560832.1| prolyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|257090544|ref|ZP_05584905.1| prolyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300861128|ref|ZP_07107215.1| proline--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|312903702|ref|ZP_07762876.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256947157|gb|EEU63789.1| prolyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256999356|gb|EEU85876.1| prolyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300850167|gb|EFK77917.1| proline--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|310632894|gb|EFQ16177.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315035640|gb|EFT47572.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315578695|gb|EFU90886.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 572

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A + + G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMIEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|323339428|ref|ZP_08079710.1| proline--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323093139|gb|EFZ35729.1| proline--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 572

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 146/226 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+LMLR G I Q + G+Y++LPL  + L N+ AIIREE
Sbjct: 1   MKQSKLLIPTLKEVPSDAEAISHQLMLRGGYIKQITAGMYAYLPLAYRVLRNIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A EM VP    A+LW ++GRY++YG  + +  DR+++  I GPTHEE  T I R 
Sbjct: 61  MENIDAAEMLVPAALPAELWQQTGRYETYGPNLFKFQDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ K+RDE RPRFG++R REF+MKDAYSF    E    ++  M  +
Sbjct: 121 AVKTYKKLPITLYQIQTKYRDENRPRFGLLRGREFIMKDAYSFHAEEESLDKTFRDMDSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  +F+R+GL    +  ++G +GG+ S EF+ +A  GE  V  S +
Sbjct: 181 YTNVFNRVGLNFRSIIGDAGAMGGNNSKEFMAIAPIGEDTVVYSDE 226



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 97/160 (60%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+YS  + A     +G+   + MG YGIG  R+++A++E   D  GI
Sbjct: 403 TRGIEIGHIFKLGTRYSKDLDAVVLDENGRQLPIIMGCYGIGVSRLLSAIVEQHSDENGI 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +WP S+APF + +I  N+K  +QV  +  EK+   L   G  V  DD  E+ G +FA +D
Sbjct: 463 VWPRSIAPFDVHVIPVNVKKEEQV--ELSEKVTELLENAGYKVLVDDRKERPGVKFADSD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P ++ VG K  ++  VEIK R TG   ++ L+E++N
Sbjct: 521 LIGIPARITVGKK-AAEGIVEIKLRRTGETLEVKLDELLN 559


>gi|224437778|ref|ZP_03658725.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313144224|ref|ZP_07806417.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313129255|gb|EFR46872.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 593

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 150/226 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E P+DA + SH+ ++R G I Q   GIY++LPLG+K LD V  II+EE
Sbjct: 1   MRFSQLFVNTLKEAPKDALLKSHQYLVRGGFIQQVGSGIYNFLPLGKKLLDKVRFIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + T A E+ +  +  ADLW ESGRY+ YG+E+LRL DR +   + GPTHEEV+T I ++
Sbjct: 61  MDITNAQEILMGFVTPADLWRESGRYEKYGRELLRLVDRKENEFVLGPTHEEVVTFIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFRDE+RPRFG+MR REF+MKD YSF  + E     ++ M  +
Sbjct: 121 GVKSYKQLPVHLYQIHTKFRDEVRPRFGLMRGREFIMKDGYSFHSSFEDLDREFDVMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +I  R+G+    + A+SG IGG  S EF+VLA  GE  +   K+
Sbjct: 181 YKKILERIGVDFKIVEADSGAIGGSGSKEFMVLAPCGEDTIVVCKN 226



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 1/143 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  GTKYS  M+A F   DGK   + MG YG G  R++ A++E   D  G 
Sbjct: 426 TKGIEVGHIFKLGTKYSHAMNAQFLDKDGKAQDLIMGCYGFGVSRILPAILEQKSDELGC 485

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +W   V  F +++I     D    +   KIY      G DV  DD  E+ G +    +LL
Sbjct: 486 VWGKEVKVFDLAIIISNVKDIAQSEFATKIYEECKARGIDVLLDDRDERFGVKMKDFELL 545

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           GF   +IVG K +++ ++E+  R
Sbjct: 546 GFSFALIVG-KGLNEGRLELIKR 567


>gi|321472321|gb|EFX83291.1| hypothetical protein DAPPUDRAFT_127919 [Daphnia pulex]
          Length = 406

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 203/396 (51%), Gaps = 39/396 (9%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            KL+   G++ Q+S G+++  PLG ++L+ +  I+ +E    G  ++ +P L + +LW  
Sbjct: 5   QKLLNEMGIVRQNSPGLFTLTPLGVRSLEKLVKIVDDELKYVGCQKLQLPILTAGNLWKT 64

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRD 141
           +GR++S G E+L + DR+ +  +  PTHEE +TD   S  + +++ LP   YQI  KFRD
Sbjct: 65  TGRWESTGSELLTIKDRHARDYVLSPTHEEAITDFVASLPQLTHKQLPLKLYQITSKFRD 124

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E++PRFG++R REF MKD Y+FD T E +  +Y+ +  +Y RIF RL +  + +   +G 
Sbjct: 125 EIKPRFGLLRGREFTMKDLYTFDKTVEAAHETYDLICTAYNRIFQRLNVPFVKVVGSTGN 184

Query: 202 IGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           IGG  SHE+   +  GE  +  CS         + N+  +  I+   +  +  +P   T 
Sbjct: 185 IGGLSSHEYHFPSSIGEDDLKICS---------ACNSGSNAEIATTDVCSKCGSPVKQT- 234

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                              +GIEV H F  GTKYS  ++A F   DG     QMG YGIG
Sbjct: 235 -------------------KGIEVAHTFLLGTKYSQILNALFSAEDGSRSVCQMGCYGIG 275

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD------QVCRDACEKIYARLSK 374
             R++AA +E       I WP  +AP+ + ++  K         Q+      +I  ++  
Sbjct: 276 ISRILAASVEVLGTDSEIRWPKLIAPYSVCVVAPKGGSKEESAIQLAHFLANQI-DQIQP 334

Query: 375 VGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSK 409
              DV  DD M   +G +   A  +G+P  ++VG K
Sbjct: 335 FMQDVILDDRMTTTVGKKLMEAKRVGYPYIIVVGKK 370


>gi|260886940|ref|ZP_05898203.1| proline--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260863002|gb|EEX77502.1| proline--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 543

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 137/199 (68%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y++LPL  + +  +  IIREE +  G  E+ +P +Q A++W ESGR
Sbjct: 1   MLRAGMIRKAAGGVYTYLPLAWRTIKKIEQIIREEMDAAGGQELCMPIMQPAEIWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +  +G+EM RL D + +    GPTHEE++T + R  ++SY+ LP   YQIQ K+RDE+RP
Sbjct: 61  WSVFGQEMFRLKDCHGREFCLGPTHEEMITTLVRDEVRSYKQLPLLLYQIQNKYRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFG+MRSREF+MKD YSFD    G+  SY KM+ +Y  +F R GLK  P+ A++G IGG+
Sbjct: 121 RFGLMRSREFIMKDLYSFDKDEAGADISYKKMYDAYTNVFTRCGLKFRPVEADAGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            +HEF VLA  GE+++ C 
Sbjct: 181 HTHEFTVLAAAGESEIACC 199



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE G +F  GTKYS  + ATF   +GK+  + MG YGIG  R +AA IE  +D  GII
Sbjct: 378 RGIEAGQVFKLGTKYSEALGATFLDENGKEKALFMGCYGIGVGRTMAAAIEQHNDEHGII 437

Query: 340 WPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP ++AP+++ +  +N KA +Q+     E++Y  L   G D   DD  ++ G +F  ADL
Sbjct: 438 WPRAIAPYEVVVVPVNAKASEQLA--LAEEVYEMLLAAGVDAILDDRKDRAGVKFKDADL 495

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G+PL++ +G K + + K+E+K R +G   D +  E +
Sbjct: 496 IGYPLRITIGPKALEEGKIELKVRRSGESCDCTKAECL 533


>gi|257459695|ref|ZP_05624804.1| prolyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257443120|gb|EEV18254.1| prolyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 572

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/225 (48%), Positives = 139/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F P L+E PRDA + SH L++R G I Q   G+Y++LPLG+  L+ + A+IR+E
Sbjct: 1   MKFSKLFAPSLKEAPRDAVLPSHALLIRAGFIEQLGSGLYNFLPLGKIVLERICAVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S   + SAD W +SGRY  YGKE+LR  DR D   +  PT+EE    +   
Sbjct: 61  MDAAGAQEVSFSVVTSADAWKKSGRYAKYGKELLRFKDRKDNDFVLSPTNEEAAVLMVAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF MKDAYSF       K  +  M  +
Sbjct: 121 KITSYKQLPLNIYQINTKFRDEARPRFGLLRGREFTMKDAYSFHADAADMKREFEVMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    + A+SG IGG  S EF+VLAD GE  +   K
Sbjct: 181 YSRIFTRLGLNFRTVDADSGAIGGSGSKEFMVLADNGEDDIVVCK 225



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 1/163 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GT+YS PM A F  A+GK     MG YGIGA R++A  IESSHD +G +
Sbjct: 407 KGIEVGHIFQLGTRYSEPMGARFLDANGKARAFYMGCYGIGASRLIAVAIESSHDERGCV 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  +APF++ +I     D    +  EK+Y +  + G  V  DD  E+ G +    +L+G
Sbjct: 467 WPRELAPFELEIIISNHKDAAAVEFAEKLYEQCRERGIRVLLDDRAERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  V+VG K +++  VE   R    R+ +S +E++++   + 
Sbjct: 527 FPYAVLVG-KALAERSVEFITRAGLKRQSVSADEILSFIERKL 568


>gi|28378679|ref|NP_785571.1| prolyl-tRNA synthetase [Lactobacillus plantarum WCFS1]
 gi|254556877|ref|YP_003063294.1| prolyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300768192|ref|ZP_07078097.1| proline--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180820|ref|YP_003924948.1| prolyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|81840975|sp|Q88VK1|SYP_LACPL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28271515|emb|CAD64420.1| proline--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|254045804|gb|ACT62597.1| prolyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300494256|gb|EFK29419.1| proline--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046311|gb|ADN98854.1| prolyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 569

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH++MLR G I Q S G+Y++LPL  + L N+  IIR+E
Sbjct: 1   MKQSKLLIPTLKEVPNDAEALSHQMMLRAGYIRQISAGMYAYLPLAYRVLTNIEKIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EM VP +  A+LW  +GRY++YG E+ +L +R+D+  I GPTHEE  T I R 
Sbjct: 61  MEKIDAAEMLVPAVIPAELWKATGRYETYGPELFKLKNRHDREFILGPTHEETFTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K+RDE RPR+G++R REF+MKDAYSF         ++  M  +
Sbjct: 121 EIKSYKRLPLTLYQIQAKYRDEDRPRYGLLRGREFIMKDAYSFHADEASLDDTFQDMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GLK   +  + G +GG  S E+  +A  GE  +  S
Sbjct: 181 YQNIFERVGLKFRSIIGDGGAMGGKDSREYSAIAPVGEDTIVYS 224



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 5/159 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GT+YS  + A    A+G++  V MG YGIG  R+++A+ E   D  G+I
Sbjct: 404 KGIEIGHIFKLGTRYSKDLHAEVLDANGRNIPVIMGCYGIGVSRLLSAIAEQRADENGLI 463

Query: 340 WPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP ++APF + +I  N K  DQV  +  +++ A+L   G +V +DD  E+ G +FA +DL
Sbjct: 464 WPKAIAPFDVHVIPVNPKKADQV--EVADQVEAQLEAAGYNVLYDDRKERPGVKFADSDL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G P ++ +G K  S+  VEIK R TG   ++  EE+ N
Sbjct: 522 MGIPARITIGKK-ASEGIVEIKLRQTGETLEVKQEEIAN 559


>gi|195953061|ref|YP_002121351.1| prolyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|226701299|sp|B4U8B2|SYP_HYDS0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|195932673|gb|ACG57373.1| prolyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 565

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL   +E P + E ASH+ + + G I Q + GIY   P+  + L  +  I+R+E
Sbjct: 1   MRWSRYFLYTTKEEPSETEAASHRFLTKAGFIKQVASGIYELTPIAFRVLKKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +  L  A+LW E+GR+D YG E+ +L DR+D+    GPTHEE +TD+ R 
Sbjct: 61  MDKAGAQELLLTILNPAELWKETGRWDYYGNELFKLKDRSDRDYCLGPTHEEEITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  KFRDE RPR+G++R REF+MKDAYSFD   E +K+SY+ M  +
Sbjct: 121 TVRSYKQLPLNLYQIHTKFRDEKRPRYGLIRGREFIMKDAYSFDTDEESAKNSYDIMVKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
           Y  IF RL L  + ++A+ G IGG  SHEF+ +   GE  + +C
Sbjct: 181 YKNIFKRLNLNILMVKADVGQIGGKSSHEFVAITKYGEALIAYC 224



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 1/159 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+G+E+GH F  GT+YSLPM A F   DG +  V MG YGIG  R++AA++E  HD KGI
Sbjct: 398 AQGLELGHTFLLGTRYSLPMKAFFTDKDGVEKPVVMGCYGIGISRLIAALVEQYHDEKGI 457

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAPF++ +  +   D +     E +Y  L++ G +V +DD     G +F  ADL+
Sbjct: 458 KWPLPVAPFQVLISCVNTSDDIQYSTSEHLYKSLTQEGIEVLFDDRDVSPGVKFNDADLI 517

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P +++VG K   D  VE+  R T    D+ +++V++Y
Sbjct: 518 GIPYRIVVGKK-AKDGLVEVVDRHTLKAVDVPIDKVLDY 555


>gi|307198619|gb|EFN79469.1| Probable prolyl-tRNA synthetase, mitochondrial [Harpegnathos
           saltator]
          Length = 434

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 223/445 (50%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPI---LQENPRDAEI--ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R SK F P+   +  N    EI   S+KLM+  G+I   S G+YS LPLG + L+ +  I
Sbjct: 11  RTSKIFQPLPSGIFANKDKTEILSKSYKLMINYGIIKSVSTGMYSILPLGMRVLNKLIKI 70

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           I +E    GA ++ +P L SA LW +S RY+S   E+  + DR+DK  I  PT+EE + D
Sbjct: 71  IDKEMTDLGAEKIMLPALTSAKLWKKSNRYNSNKTELFTVTDRHDKEYILSPTYEEAICD 130

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +  +     ++LP   YQI  K+RDE++PR G +RSREF+MKD Y+FD T   ++ +YN 
Sbjct: 131 LVSATYLPEKSLPLRLYQISSKWRDEMKPRLGFIRSREFIMKDLYTFDTTLNKAQDTYNL 190

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSE 235
           +  SY  IF ++G+  +    + G IGG  SHE+  ++D GE  + +CS         S 
Sbjct: 191 VCESYSNIFKQIGIDHMKAVGDVGTIGGLSSHEYHYISDIGEDVILWCS---------SC 241

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTK 293
           N   ++IIS                         + PE K    R   +E+GH F   TK
Sbjct: 242 NYTINEIIS----------------------KITTCPECKGELQRHNSVEIGHTFLLNTK 279

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P++A +   + K   + MG YG+G  R+ A ++E       + WP  +AP+   +I 
Sbjct: 280 YSQPLNAMYI-ENNKLKPMIMGCYGLGVSRIFALIVEILSTNNEMRWPTKLAPYTACIIP 338

Query: 354 IK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKF 410
            K  + ++      E+++  L K   D   DD  +  IG +   A  +G+P  +++G   
Sbjct: 339 PKTGSKEEYISAYIEQLFEILQKRDIDTILDDRTQFTIGKRLVYARAIGYPYIIVIGKAA 398

Query: 411 VSDSKV-EIKHRLTGIREDMSLEEV 434
                + EI      +   +SLE++
Sbjct: 399 TQSIPLFEIHDINNSVSHKLSLEQI 423


>gi|229552422|ref|ZP_04441147.1| proline--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258539792|ref|YP_003174291.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|229314159|gb|EEN80132.1| proline--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257151468|emb|CAR90440.1| Prolyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 576

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 145/224 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVYAYLPLAERVLSRIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPALLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLNTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+   +  + G +GG  S EF  +A  GE  +  S
Sbjct: 181 YTNIFDRLGLRYRTIIGDGGAMGGKDSKEFSAIASIGEDTIVYS 224



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 5/159 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+YS  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+I
Sbjct: 404 RGIEIGHIFKLGTRYSETMGADFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADDHGLI 463

Query: 340 WPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP ++APF I LI  N+K  +Q    A   I   L   G  V  DD  E+ G +FA +DL
Sbjct: 464 WPTTIAPFDIHLIPVNLKREEQKTLTAA--IGTMLEDAGYSVLVDDRNERPGVKFADSDL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G PL+V VG K V D  VE+K R TG   ++  EE+I+
Sbjct: 522 IGIPLRVTVGKKAV-DEIVELKLRKTGETIEVKKEELIS 559


>gi|113955222|ref|YP_731224.1| prolyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031649|sp|Q0I8J8|SYP_SYNS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113882573|gb|ABI47531.1| prolyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 598

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIAS +L++R G I +   GIY++LPL  + L  V  I+REE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASQQLLIRGGFIRRVGSGIYAYLPLMWRVLQRVMRIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA+E  +P LQ A+LW +SGR+  Y      M  L DR ++++  GPTHEEV+T++
Sbjct: 61  MNQIGALETLLPQLQPAELWEKSGRWQGYTAGEGIMFHLEDRQERSLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF          Y +M
Sbjct: 121 ASDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHGDEGDLARMYEEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y R+F R GL ++ + A+SG IGG  S EF+V AD GE  +  S D
Sbjct: 181 EKAYTRVFQRCGLTAVGVDADSGAIGGAASQEFMVTADAGEDLILISPD 229



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 123/242 (50%), Gaps = 20/242 (8%)

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GL+ +P+    G IG DLS   +  A + + + +   D       +E   F  +   N+ 
Sbjct: 339 GLQPLPL----GSIGPDLSDHSLAGARSWKERFYKLAD----TTAAELERF--VCGANTS 388

Query: 249 VE-QWTAPYA-----ATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMS 299
            E +W A ++        D+ N K  D     PE      RGIEVGHIF  G KYSL M 
Sbjct: 389 NEHRWGASWSDLGTIPAMDLRNAKAGDHCVHRPEQSLEERRGIEVGHIFQLGRKYSLSMG 448

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A     +GK  ++ MG YGIG  R+  A +E  HD  GIIWP S+APF++ ++     D+
Sbjct: 449 AQITTKEGKQEHLWMGCYGIGISRLAQAAVEQHHDDAGIIWPLSIAPFQVIVVVANVQDE 508

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V     E+IY  L   G DV  DD GE+ G +F  ADL+G P +V+VG +  ++  VE+ 
Sbjct: 509 VQMALGEEIYNELLASGIDVLLDDRGERAGVKFKDADLIGIPWRVVVG-RAAAEGNVELV 567

Query: 420 HR 421
            R
Sbjct: 568 KR 569


>gi|225874389|ref|YP_002755848.1| proline--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|254782879|sp|C1F3P3|SYP_ACIC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225793232|gb|ACO33322.1| proline--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 585

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/225 (48%), Positives = 147/225 (65%), Gaps = 2/225 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DAE+ASHK +LR+G I Q   GIYS+L  GQ++++ +  I+REE 
Sbjct: 3   RWSRLFVPTLREAPSDAEVASHKFLLRSGYIRQLGAGIYSYLLFGQRSINKIVGIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ G  E  +P +  ADLW ESGR+   G  M RL DR    +  G THEEVMTDI R+ 
Sbjct: 63  DKIGQ-EFLLPAIHPADLWRESGRWTVMGDNMFRLKDRKGAELCLGMTHEEVMTDIARNE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RPR G++R R+FLMKD+YSFDL   G   SY+    +Y
Sbjct: 122 LRSYKQLPQIWYQIQNKFRDEPRPRSGLLRVRQFLMKDSYSFDLNQAGLDKSYDLHDAAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
             IF R GL  + + A+SG +GG  S EF+V  D GE  +  C+K
Sbjct: 182 RAIFTRCGLNFVVVEADSGAMGGSGSQEFMVYTDAGEDLIASCAK 226



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 5/183 (2%)

Query: 256 YAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           +   +D+ N    +  P   E  +V A+ +E+GHIF  GTKY+  M A     +GK+   
Sbjct: 397 WTVAADIRNAAEGEGCPVCGEPLKV-AKAVEIGHIFKLGTKYTESMGARVLDENGKEVMP 455

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R++ A IE ++D  G   P S+APF + +      D+  R A E + A+L
Sbjct: 456 VMGCYGIGIERILTASIEQNNDANGFWLPRSIAPFDVVVTITNMADETLRQAGEALAAQL 515

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G DV  DD  E+ G +F  ADL+G P +  VG K + + K E+  R T   +D++L+
Sbjct: 516 EAAGYDVLLDDREERAGVKFKDADLVGIPYRFNVGKKTL-EGKTELVTRATASSQDVALD 574

Query: 433 EVI 435
             +
Sbjct: 575 AAV 577


>gi|199597103|ref|ZP_03210535.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258508613|ref|YP_003171364.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199591907|gb|EDY99981.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257148540|emb|CAR87513.1| Prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|259649920|dbj|BAI42082.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 576

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 145/224 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVYAYLPLAERVLSRIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPALLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+   +  + G +GG  S EF  +A  GE  +  S
Sbjct: 181 YTNIFDRLGLRYRTIIGDGGAMGGKDSKEFSAIASIGEDTIVYS 224



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+YS  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+
Sbjct: 403 TRGIEIGHIFKLGTRYSETMGADFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADDHGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+
Sbjct: 463 IWPTTIAPFDIHLIPVNLKREEQKTLTASIGTMLEDAGYSVLVDDRNERPGVKFADSDLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL+V VG K V D  VE+K R TG   ++  EE+I+
Sbjct: 523 GIPLRVTVGKKAV-DEIVELKLRKTGETIEVKKEELIS 559


>gi|116072890|ref|ZP_01470155.1| prolyl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116064416|gb|EAU70177.1| prolyl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 593

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 112/250 (44%), Positives = 152/250 (60%), Gaps = 10/250 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEIASH+L+LR G I +   GIY +LPL  K +  + AI+R+E
Sbjct: 1   MRVSRLLLVTLRDVPAEAEIASHQLLLRGGYIRRVGSGIYGYLPLMWKVIQRITAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P L  A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNKAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF  +    +++Y  M
Sbjct: 121 AGDLLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRNTYLDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM-------DF 230
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D           
Sbjct: 181 DQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDDGTYAANQEKAI 240

Query: 231 PIPSENTDFD 240
            +PS+  D D
Sbjct: 241 SVPSKAMDLD 250



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A  + VHN       PE   +  RGIEVGHIF  G KYS  M + F    GK  +  MG 
Sbjct: 414 AGEACVHN-------PEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTNEAGKTEHFWMGC 466

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD  GI WP ++AP++  ++     DQ   +  E +Y +L   G
Sbjct: 467 YGIGISRLAQAAVEQHHDDAGICWPPAIAPYEAIVVVANMQDQTQAELGESLYEQLLAAG 526

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +DD  E+ G +F  ADL+G P +V+VG +   D  VE+  R
Sbjct: 527 VDALFDDRKERAGVKFKDADLIGIPWRVVVG-RDAGDGVVELVER 570


>gi|322434762|ref|YP_004216974.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321162489|gb|ADW68194.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 612

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/223 (48%), Positives = 147/223 (65%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHKL+LR G + Q   GIYS+L LGQ++++ + AIIR+E 
Sbjct: 3   RWSKLFIPTLREAPSDAEVASHKLLLRAGYVRQLGAGIYSYLFLGQRSVNKIVAIIRQEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +PT+   ++W ESGR+   G  M RL DR    +  G THEEVMT I RS 
Sbjct: 63  DTIGQ-EFLLPTIHPREVWEESGRWTGMGDNMFRLKDRKGAELCLGMTHEEVMTTIARSE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RP+ G++R R+F+MKD+YSFD+   G   SYN    +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPKSGLLRVRQFIMKDSYSFDIDEAGLDLSYNLHDAAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF R GL+ + + A+SG +GG  S EF+V  D GE  +  S
Sbjct: 182 RRIFDRCGLEYVAVEADSGAMGGSQSQEFMVYTDAGEDLIASS 224



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 6/183 (3%)

Query: 259 TSDVHN--EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+ N  E   D +        + +E+GHIF  G KYS  M AT    DGK+    MGS
Sbjct: 423 TADLRNILEGELDPIGNLPLRLGKAVEIGHIFKLGYKYSKSMGATVLNRDGKEVTPIMGS 482

Query: 317 YGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           YGIG  R++ A IE+S   + G+    P S+APF++ +      +    +A EKI A L+
Sbjct: 483 YGIGVERILTAAIETSAAKNGGEAYALPASIAPFQVIVTVTNIKEPALVEAGEKIAADLA 542

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G DV  DD  E+ G +F  ADL G P ++ VG K  S+ +VE+  RL     D+ +E 
Sbjct: 543 AAGLDVLLDDRDERAGVKFKDADLTGVPYRIAVGKKL-SEGQVELLDRLQNQTLDIPVEA 601

Query: 434 VIN 436
            + 
Sbjct: 602 AVQ 604


>gi|256832247|ref|YP_003160974.1| prolyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256685778|gb|ACV08671.1| prolyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 594

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 106/218 (48%), Positives = 141/218 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASH+L++R G I + + GIYSWLPLG + LD V+A++REE
Sbjct: 3   LRLSTLFVRTLREDPVDAEVASHRLLVRAGYIRRAAPGIYSWLPLGLRVLDKVDAVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA  +  P L   + +  +GR+  YG  + RL DR D   +  PTHEE+ T + + 
Sbjct: 63  MERAGAQRVHFPALLPREPYEATGRWTEYGPNLFRLQDRKDGDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFDLT EG   SY     +
Sbjct: 123 LYSSYKDLPVTLYQIQTKYRDEARPRAGLIRGREFIMKDAYSFDLTEEGLAESYRAQRDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL  + + A SG +GG  S EF+   D GE
Sbjct: 183 YERIFRRLGLDYVIVAATSGAMGGSRSEEFLTPTDIGE 220



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 3/145 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYGIG  RV+AA+ ++ HD +G+
Sbjct: 425 ARGIEIGHIFQLGRKYAEALGLKVLDVNGKHTTVTMGSYGIGVTRVMAALAQAHHDSQGL 484

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADL 397
            WP  VAP  + L+     D    +A E +  RLS  G +V +DD +    G +F  A+L
Sbjct: 485 AWPIQVAPAHVHLV-ATGKDARIFEAAESLAQRLSDRGVEVIYDDRVKVSPGVKFKDAEL 543

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRL 422
            G P  V+VG + + +  +E + R+
Sbjct: 544 FGVPFIVVVG-RGLDEGTIEFRTRV 567


>gi|332686700|ref|YP_004456474.1| prolyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332370709|dbj|BAK21665.1| prolyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 574

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 147/226 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P L+E P DAE+ SH+++LR G I Q + G+Y++LPL  + ++N+  I+REE
Sbjct: 1   MRQSKMFIPTLREIPNDAEVLSHQILLRGGYIRQIAAGVYAYLPLANRIIENLKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEM +P +  A+LW +SGRY +YG ++ RL DRN++  I GPTHEE   ++  +
Sbjct: 61  FEKIDAIEMLLPAILPAELWEKSGRYQTYGPDLYRLKDRNERQYILGPTHEETFVELIGN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSF  T E    +YN    +
Sbjct: 121 DVNSYKRLPLNLYQIQSKYRDEKRPRFGLLRGREFIMKDGYSFHATEESLDTTYNDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R GL    +  + G +GG  S EF+ ++D GE  +  S +
Sbjct: 181 YSAIFKRCGLVFRSIIGDGGAMGGKDSKEFMAISDIGEDTICFSTE 226



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIE+GHIF  GT+YS  M+AT    +GK+ Y+ MGSYGIG  R+ AA+ E + D KG+
Sbjct: 403 TKGIEIGHIFKLGTRYSESMNATILDENGKEQYIIMGSYGIGVSRLFAAIAEQNADDKGV 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +APF I ++ +   D       E+I   +   G +V  DD  E+ G +FA ADL+
Sbjct: 463 NWPIGIAPFDIHVVQMNMKDDEQTQLSEEIEELMISAGYEVLVDDRNERAGVKFAEADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K + D  VEIK + TG   ++  EE+
Sbjct: 523 GCPIRITVGKKAIDDI-VEIKIKRTGEMLEVKKEEL 557


>gi|329767542|ref|ZP_08259065.1| prolyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328835876|gb|EGF85598.1| prolyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 566

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/256 (40%), Positives = 155/256 (60%), Gaps = 11/256 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y+ LPL  + +  +  +IREE
Sbjct: 1   MRQSRTFIPTTREVPSSAEATSHKLLIKAGMVKQVSAGVYTHLPLATRVIQKIEKVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P LQS + W +SGR++  G E++R+ DR +      PT EE++     +
Sbjct: 61  HEKIGAVELLMPILQSDEYWKKSGRWNKMGDELIRVTDRKNAGYALSPTAEEIICQTVSN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  TPE  + +Y   + +
Sbjct: 121 MVTSYKQLPVNLYQIQTKFRDEIRPRLGLLRCKEFIMKDGYSFHDTPESLRETYKDYYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE          D    +E +D+ 
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEVGE----------DTIAYTEESDYA 230

Query: 241 DIISLNSIVEQ-WTAP 255
             I   ++VEQ +T P
Sbjct: 231 ANIETAAVVEQNYTMP 246



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 101/159 (63%), Gaps = 5/159 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG +F  G  YS  M  T+  A+G+ ++  MG YGIG  RV++A+IE   D KGI
Sbjct: 403 AKGIEVGQVFELGKGYSESMDITYLDANGRANHFYMGCYGIGVTRVISAIIEQHSDDKGI 462

Query: 339 IWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  VAP+++ L  +++K  +QV     E++YA+L+  G +V +DD  E+ G +F  AD
Sbjct: 463 IWPKEVAPYQVHLVCVDVKKEEQV--KLSEELYAQLTAAGYEVLYDDRAERAGVKFNDAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G PLQV+VG K   +  VE+K R T  + D  + +V+
Sbjct: 521 LIGIPLQVVVGKK-AGEGIVEVKERKTLEKVDTEVADVL 558


>gi|15605873|ref|NP_213250.1| prolyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|81816424|sp|O66690|SYP_AQUAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2983039|gb|AAC06648.1| proline-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 570

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 151/225 (67%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL   +E P++AE  SH+L+L+ G I Q S GIY  LP   K L  V +IIR+E
Sbjct: 1   MRWSRYFLYTEKEEPKEAEAPSHRLLLKAGFIKQVSAGIYELLPPAYKVLKKVESIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW E+GR+++YG+E+ +L DRN +    GPTHEE +TD+ R 
Sbjct: 61  MDRSGAQELLLTVLNPKELWEETGRWETYGEELFKLKDRNGREYCLGPTHEEEITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ+KFRDE RPRFG++R+REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 VVRSYRQLPVILYQIQVKFRDEKRPRFGLIRAREFIMKDAYSFDTDDMSAMISYEAMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y RIF++L L  I   A+ G IGG +SHEFI   D GE +V +C 
Sbjct: 181 YQRIFNKLRLNVIMAEADVGQIGGKMSHEFIAFTDYGEAKVAYCE 225



 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 108/167 (64%), Gaps = 1/167 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GHIF  GT+YS PM A F   DGK+  + MG YGIG  R++AA++E  HD KGI 
Sbjct: 404 RGLELGHIFLLGTRYSEPMKAYFTDRDGKEKPIIMGCYGIGVSRILAALVEQYHDDKGIK 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAPF++ +I +   D+  ++  EK+Y    + G DV +DD  E  G +FA ADL+G
Sbjct: 464 WPTPVAPFELDIILLNTKDEEMKNVAEKLYLEAEEKGIDVIFDDREESPGFKFADADLVG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           FP +++VG K V + KVE++ R TG + D+ +E+ I++   +   ++
Sbjct: 524 FPYRIVVGKK-VKEGKVEVQSRHTGEKWDVEIEKAIDFVKEKIEEDK 569


>gi|116492650|ref|YP_804385.1| prolyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
 gi|122265886|sp|Q03FS9|SYP_PEDPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116102800|gb|ABJ67943.1| Prolyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
          Length = 571

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 145/226 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +  ++E P DAE+ SHK+MLR G I Q S G+Y++LPL  K +  +  I+REE
Sbjct: 1   MKQSKILISTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPLAYKVISKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MEAIDAVEMLTPAVLPAELWKQSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ+K+RDE RPR+G++R REFLMKDAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLSLYQIQMKYRDEDRPRYGLLRGREFLMKDAYSFHADEETLDQSFRDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF R GL    +  ++G +GG  S EF  +A  GE  +  S++
Sbjct: 181 YQNIFRRCGLNFREIVGDAGAMGGRDSKEFSAIASIGEDTIAYSEE 226



 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GTKYS  + A     +G+   V MG YGIG  R+++AV E   D  G++
Sbjct: 406 KGIEIGHIFKIGTKYSEALDAKVLDENGRAIPVIMGCYGIGVSRLLSAVSEQQSDENGLV 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++AP+ + +I + A +    +  ++I   L+K G DV  DD  E+ G +FA +DL+G
Sbjct: 466 WPKNIAPYDVHVIPVNAKNAEQMEIADQINGELTKAGYDVLVDDRKERAGVKFADSDLIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PL+V +G K  S+  VE+K R TG   ++ + E+ N
Sbjct: 526 IPLRVTIGKK-ASEGIVEVKLRKTGEAVEVKVAELNN 561


>gi|328957405|ref|YP_004374791.1| proline--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673729|gb|AEB29775.1| proline--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 568

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SHK++LR G I Q S G+YS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKLFIPTLRDVPNEAEVLSHKMLLRAGYIRQISSGVYSYLPLATRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P+L   +LW ESGRY++YG++++ L DR+ +  + GPTHEE  T + R 
Sbjct: 61  FEKINAVEMLMPSLLPRELWEESGRYETYGEDLMTLQDRHGRDYLLGPTHEEAFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE RPR G++R REF+MKDAYSF  + E    +Y     +
Sbjct: 121 EITSYKRLPLSLYQIQTKFRDEKRPRSGLLRGREFIMKDAYSFHDSFESLDATYQDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    +  ++G +GG  S EF+ L+D GE  +  S
Sbjct: 181 YTRIFERCGLDFRNIIGDAGAMGGSNSKEFMALSDIGEDTIVYS 224



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIE+GHIF  GT+YS  M+AT    +G+   V MG YGIG  R+++A+ E     +G+
Sbjct: 403 AKGIEIGHIFKLGTRYSESMNATVLDNNGRSIPVVMGCYGIGVSRLLSAITEQQSSEEGL 462

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            WP  +AP+++ LI  N+KA DQV  +   ++Y  L   G  V  DD  E++G +F  +D
Sbjct: 463 NWPRHLAPYELHLIPVNMKADDQV--NLSNELYTSLQNAGFSVLLDDRNERVGVKFKDSD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P+++ VG K   ++ VE+K R TG   ++  EE+I+
Sbjct: 521 LIGMPIRITVGKK-AQENIVELKLRKTGEALEVRTEELID 559


>gi|27904721|ref|NP_777847.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|46396631|sp|Q89AN7|SYP_BUCBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27904118|gb|AAO26952.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 574

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 99/224 (44%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  KY    L+E P +++  SH LMLR G+I Q++ G Y WLP G + L  V  II+ E
Sbjct: 1   MQARKYLFSTLKETPHNSDCISHALMLRAGIIRQNTSGTYIWLPTGLRILKKVIRIIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+++P LQ  +LW  S R  +YG+E+ ++ DR +K  I GPTHEE++T   ++
Sbjct: 61  MKQCGAMEIAMPFLQKKNLWDLSKRVITYGQELFQVTDRTNKKFILGPTHEEMITYFIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE+RPRFG++R++EF+MKDAYSF +     + +YN M+ +
Sbjct: 121 ELQSYKQLPLILYQIQTKFRDEIRPRFGIIRTKEFMMKDAYSFHINMLSLEKTYNLMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y++IF ++ LK   + A+SG +GG  SHEF   ++TGE  +  S
Sbjct: 181 YIKIFKKMKLKFYAVEADSGLMGGLKSHEFQAPSNTGEDVIVLS 224



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 39/249 (15%)

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +L  TG T+ F     +DFP+ +   DF  +I+L +        +   S++ N K F+++
Sbjct: 329 ILNVTGTTKDFIGPINLDFPVIA---DFS-VINLEN--------FTIGSNITN-KYFNNM 375

Query: 272 PENKRVS-------------------------ARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             NK +S                          + IE+ HIF  G KYS  M+   +   
Sbjct: 376 NWNKDISIPQTYDIRYVLEGDPSPDGAGELKMQKSIEIAHIFQLGKKYSKIMNVKIQNKI 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   + MG YGIG  R++AA+IE ++D  GIIWPDS+APF I++I +  H   + +   
Sbjct: 436 GKKDTLIMGCYGIGITRIIAAIIEQNNDKNGIIWPDSIAPFTIAIIPVCFHKSTLVKQQS 495

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EKIY    K   D   DD  + +    +  +L+G P  +I+  K + +  VE + R   +
Sbjct: 496 EKIYNFCKKNNIDALLDDRKQNLSITLSEIELIGIPYSIIISEKLLKNDMVEYRERHKNV 555

Query: 426 REDMSLEEV 434
           ++ ++   V
Sbjct: 556 KKIINKNHV 564


>gi|300087319|ref|YP_003757841.1| prolyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527052|gb|ADJ25520.1| prolyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 573

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/225 (46%), Positives = 150/225 (66%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P +AE  SH+L+LR GMI Q + G+YS+LP   +    +  IIR+E
Sbjct: 1   MRLSQLFGKTQREIPGEAETISHRLLLRAGMIAQLTAGVYSYLPPAWRTSRKIMDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+++P LQ  +LW +SGR  ++G  + +L DR +  +  GPTHEEV++D+   
Sbjct: 61  MDAAGCQEITMPVLQPIELWQKSGRGAAFGDNLFQLTDRKEHTLALGPTHEEVVSDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ K RDE RPR G++R REF+MKD YSFD    G + SY +M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKLRDEPRPRGGLIRVREFIMKDMYSFDADEAGLEESYQRMVQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y  I+ R GLK++ + A+SG IGG  SHEF+VLA++GE +V FC+
Sbjct: 181 YKNIYRRCGLKAMAIEADSGAIGGKASHEFMVLAESGEDEVIFCA 225



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 93/167 (55%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGIEVGH+F  GT  +    A +  A+G      MG YGIG  R++AA IE +HD KG
Sbjct: 398 ATRGIEVGHVFKLGTFLAETFGAVYTDAEGNQKPCIMGCYGIGIGRLLAAAIEQNHDDKG 457

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP  +AP+++ L  +   ++  R A EK+Y  L+  G +V +DD  E  G +F  ADL
Sbjct: 458 IIWPMPIAPWQVHLTGLGLENEPVRAAAEKLYGELTSAGIEVLYDDRPESPGVKFNDADL 517

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           LG PL++ +  + +    VE+K R     E +  +EV+       S+
Sbjct: 518 LGMPLRLTISPRSMDKGSVEVKQRAEKAFELVPADEVVEVTRKLVSD 564


>gi|315930573|gb|EFV09608.1| Proline-tRNA ligase [Campylobacter jejuni subsp. jejuni 305]
          Length = 220

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 142/218 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGE 218


>gi|33866303|ref|NP_897862.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|81835080|sp|Q7U5D6|SYP_SYNPX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33639278|emb|CAE08286.1| Prolyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 593

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 108/229 (47%), Positives = 145/229 (63%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LP+  K L  +  IIREE
Sbjct: 1   MRVSRLMLVTLRDVPAEAEITSHQLLLRGGFIRRVGSGIYAYLPMMWKVLQRITTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA+E  +P L  ++LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRAGALETLLPQLHPSELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF       + +Y  M
Sbjct: 121 AGELLRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEADLQATYAVM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL+++P+ A+SG IGG  S EF+V A+ GE  +  S D
Sbjct: 181 DQAYRRIFERCGLEAVPVDADSGAIGGAASQEFMVTAEAGEDLILISDD 229



 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 118/251 (47%), Gaps = 29/251 (11%)

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHE-----------FIVLADTGET---QVFCSKDFMDF 230
             R G+ +IP     G IG DL+ +           F+ LADT  T   Q  C  +  D 
Sbjct: 335 LQRQGINTIPF----GFIGPDLADKVLADASSWTTSFLRLADTTATELEQFHCGANAEDQ 390

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                +  + D+       E      A    VHN       P+ +    RGIEVGHIF  
Sbjct: 391 H--RSHCSWGDLGGAPQ-GEDLRKARAGERCVHN-------PDARLQEKRGIEVGHIFQL 440

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS  +   F   +G+D    MG YGIG  R+  A +E  HD  GI WP ++AP+++ 
Sbjct: 441 GRKYSQALDCCFTNENGRDEPFWMGCYGIGVSRLAQAAVEQHHDDGGIRWPAAIAPYEVI 500

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++    HD    D  + +YA L + G DV  DD  E+ G +F  ADL+G P ++++G + 
Sbjct: 501 VVIANNHDDAQTDLGDTVYATLLEAGIDVLLDDRKERAGVKFKDADLIGIPWRLVIG-RD 559

Query: 411 VSDSKVEIKHR 421
            ++  VE+  R
Sbjct: 560 AAEGTVELVQR 570


>gi|222874274|gb|EEF11405.1| predicted protein [Populus trichocarpa]
          Length = 191

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 138/191 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A++W E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEMWEETGRFEKMGPELLRIKDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDTAQISYQTMRAA 180

Query: 181 YLRIFHRLGLK 191
           Y RIF R GL+
Sbjct: 181 YKRIFDRFGLQ 191


>gi|322379566|ref|ZP_08053903.1| prolyl-tRNA synthetase [Helicobacter suis HS1]
 gi|321147960|gb|EFX42523.1| prolyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 576

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 144/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F P L+E P+DA + SH+ +++ G I Q   GIYS+LPLGQK L  +  II+EE
Sbjct: 1   MRYSTLFAPSLKEPPKDAVLKSHQFLIQAGFIKQIGSGIYSFLPLGQKVLSKIKNIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E     +  A LW +S R   YG+E+L   DR +   + GPTHEEV  ++ + 
Sbjct: 61  MDKHGAQECMFNFITPASLWEQSKRLHKYGQELLVFKDRKNYPFVLGPTHEEVAVEVVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  KFRDE+RPRFG+MR+REF+MKD YSF ++ +  +  +N M   
Sbjct: 121 FVQSYKQLPLHLYQIHTKFRDEIRPRFGLMRAREFIMKDGYSFHVSTQDLEREFNAMEQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF RLGL    ++A+SG IGG+ S EF+VLA+ GE  +    +
Sbjct: 181 YSRIFTRLGLNFRAVQADSGAIGGNKSKEFVVLAECGEDSIIACTN 226



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + IEVGHIF  G  Y+  + A F   +G+  + +MG YGIG  R++ A++E   D KG +
Sbjct: 416 KSIEVGHIFQLGNTYAKNLGANFLNTEGEATFFEMGCYGIGVSRLLPAILEQKSDSKGCV 475

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W    APF++ L+   + D       + +Y  L + G DV  DD   + G++    + +G
Sbjct: 476 WSLESAPFEVVLVVANSKDTELIALAQTLYQELLEAGVDVLLDDRNLRFGAKMIDFERIG 535

Query: 400 FPLQVIVGSK 409
               +I+G +
Sbjct: 536 SSYALIIGKE 545


>gi|116491012|ref|YP_810556.1| prolyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|122276806|sp|Q04F81|SYP_OENOB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116091737|gb|ABJ56891.1| Prolyl-tRNA synthetase [Oenococcus oeni PSU-1]
          Length = 570

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 110/248 (44%), Positives = 155/248 (62%), Gaps = 12/248 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  +E P +A++ SH  MLR G I Q + GIY++LPL  + ++ + +IIREE
Sbjct: 1   MKQSKIFIPTEKEVPAEAQVKSHIFMLRAGFIRQVAGGIYAYLPLANRIINKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  A EM +P +  A+LW ESGR+ +YG +M +L DR+D+  I  PTHEE  T I   
Sbjct: 61  MNRIDANEMLMPEMIPAELWKESGRFYTYGPQMYQLKDRHDREFIMAPTHEETFTKIISD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDELRP+ G++R REF+MKDAYSF    +G   +Y+ +  +
Sbjct: 121 EIKSYKKLPLILYQIQQKFRDELRPKNGLLRGREFIMKDAYSFSSDQKGLDDAYDLIESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE------------TQVFCSKDFM 228
           Y RIF R+GL    + A+SG +GG  S EF  +A TGE              +  +++F 
Sbjct: 181 YKRIFDRVGLDYREIIADSGSMGGKDSAEFQAIAATGEDIIAYSNSGKYAANIEMAEEFF 240

Query: 229 DFPIPSEN 236
           +  IP E+
Sbjct: 241 EKKIPDED 248



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 1/169 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K V  +GIE+GHIF  GT Y+  M    +   GK   + MG YGIG  R+++A+ E S+D
Sbjct: 400 KLVFTKGIEIGHIFKLGTFYTSKMGGQIQNEKGKLSDIIMGCYGIGISRLLSAIAEQSND 459

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IWP +VAPF + LI +   ++   +  ++I   L + G +V  DD  E+ G +FA 
Sbjct: 460 PKGFIWPKAVAPFNVHLITMNTKNESQVNLTKQIDKNLQEAGFEVLVDDRKERPGVKFAD 519

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +DL+G P++V+VG +      VE+K R      D+S + +I +   + +
Sbjct: 520 SDLIGIPIRVVVGRQ-ADQQIVEVKARGQESTNDVSTDNLIAFLKDKLN 567


>gi|125980520|ref|XP_001354284.1| GA11463 [Drosophila pseudoobscura pseudoobscura]
 gi|54642590|gb|EAL31337.1| GA11463 [Drosophila pseudoobscura pseudoobscura]
          Length = 462

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 228/450 (50%), Gaps = 48/450 (10%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRLFWPALV-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPIAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++     R G  ++S+P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVDGNMKRAGGQKISLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR +P   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTAPISYRQMPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSEETARGT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG LSHE+  ++  GE               
Sbjct: 182 YSVVSEAYDRLFKQLEVPFVKVNAATGMMGGSLSHEYHYVSPVGE--------------- 226

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-----FDSLPENKRVSARGIEVGHIF 288
                       +++++  +  YA  ++V + K+       S   +     RG+EV H F
Sbjct: 227 ------------DTLLQCSSCGYAGNAEVLDSKVEASTDCPSCHSSHLSQVRGVEVAHTF 274

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G KYS P+ ATF    GK   + MG YGIG  RV+A+ +E     + + WP  +AP+ 
Sbjct: 275 LLGEKYSKPLGATFLNTSGKPQSLVMGCYGIGITRVLASALEVLSTEQELRWPKLLAPYD 334

Query: 349 ISLINIK--AHDQVCRDACE-KIYARLSKVGCD--VFWDDMGE-QIGSQFAVADLLGFPL 402
           + LI  K  + +Q   +  E ++   + K+  D  +  DD  E  IG +   A  LG PL
Sbjct: 335 VCLIGPKQGSKEQQPAEVIENELLQHIGKICGDQELLHDDRKELTIGKRLLDAKRLGHPL 394

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++VG+  V     +++  ++G  E M LE
Sbjct: 395 TIVVGATAVQQEAPKLELHVSG-GEKMELE 423


>gi|116513081|ref|YP_811988.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123025108|sp|Q02VZ7|SYP_LACLS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116108735|gb|ABJ73875.1| Prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 616

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 142/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYETYGEDLYKLKNRDSSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +Y     S
Sbjct: 121 EITSYKKLPLNVYQIATKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYLDYKKS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 14/171 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R+++A++E        
Sbjct: 440 ARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSRLLSAILEQFARIYVE 499

Query: 332 ---SHDGK---GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                + K    I +P  +APF I L+ +   D+   +   ++  +L   G  V  DD  
Sbjct: 500 KTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEEKLRGKGYQVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++ +E++N
Sbjct: 560 ERAGVKFADSDLIGLPVRVTIGKK-AAEGIVEVKIRATGEVVEINKDELVN 609


>gi|194865182|ref|XP_001971302.1| GG14505 [Drosophila erecta]
 gi|190653085|gb|EDV50328.1| GG14505 [Drosophila erecta]
          Length = 458

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 226/455 (49%), Gaps = 44/455 (9%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMLQAGGQKITLPILTPTGLWRKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD+  E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVCEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +   K    F   
Sbjct: 182 YSVVNAAYDRLFKQLEVPFVKVNAATGMMGGSVSHEYHYVSPVGEDNLLQCKS-CGFAGN 240

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           SE            ++     P  ++SD+                 RG+EV H F  G K
Sbjct: 241 SE-----------VVMAPANCPSCSSSDLKE--------------VRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTKGKPQSLVMGCYGIGITRVIAAALEVLSSDNELHWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +   +A       L  VG  C   ++  DD  E  IG +   A  LG PL ++VG
Sbjct: 336 PKQGSKEQPEAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVG 395

Query: 408 SKFV-SDS-KVEIKHRLTGIREDMSLEEVINYASH 440
           +K +  DS K+E+ H   G   ++ L E +   + 
Sbjct: 396 AKAIRQDSPKLEV-HTSKGETLELDLSETLKLVAE 429


>gi|154175003|ref|YP_001408388.1| prolyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|166980112|sp|A7GYU6|SYP_CAMC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112802606|gb|EAT99950.1| prolyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 567

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 139/224 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK++ P  +E P+DA + SH  ++R G + Q   G+Y++LPLG+  LD +  +++EE
Sbjct: 1   MRFSKFYAPTTKEAPKDASLPSHIFLVRGGFVEQIGSGLYNFLPLGKMMLDKITKVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E+S   + S +LW +SGR++ +GKE+LR  DR +   +  PT+EE    + R 
Sbjct: 61  MDAAGVLEVSFSVVTSGELWKQSGRFNVFGKELLRFKDRKENDFVLSPTNEEAAVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REF MKDAYSF       K  ++ M  +
Sbjct: 121 KVTSYKQLPLNIYQINTKFRDEARPRFGLLRGREFTMKDAYSFHANEADMKREFDLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  + C 
Sbjct: 181 YSKIFTRLGLNFRAVEADSGAIGGSGSKEFMVLAKNGEDDILCC 224



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 29/253 (11%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKD-----FMDFPIPSENTD-FDDIISLNSIVEQW 252
            GP+G      +I     G+TQ+ C  +     F+   + S N + F D++S+ +     
Sbjct: 336 CGPVGLSGVDFYIDNELKGQTQMICGANEKDYHFVGVSVSSFNDERFKDLVSVQA----- 390

Query: 253 TAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                           D  P+   K   ++GIEVGHIF  G KYS  M ATF   +GK  
Sbjct: 391 ---------------GDICPKCGGKLELSKGIEVGHIFQLGYKYSSAMGATFLDENGKAR 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              MG YGIG  R++A ++E+SHD +G +W     PF+  ++     D+       K+Y 
Sbjct: 436 PFLMGCYGIGVSRLIAVMVEASHDDRGCVWKKECTPFECEIVISNLKDEAGVKFATKLYE 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +G  V  DD  E+ G +    +LLGFP  +IVG K + + +VE+  R   ++E + 
Sbjct: 496 NLRNLGLCVLLDDRNERFGVKMNDFELLGFPYAIIVG-KGLENGEVELITRDGLVKEVVK 554

Query: 431 LEEVINYASHRFS 443
            +E+++    +  
Sbjct: 555 KDEILSVLKEKLC 567


>gi|315638151|ref|ZP_07893333.1| proline--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315481687|gb|EFU72309.1| proline--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 568

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 142/225 (63%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+++ P  +E P+DA + SH  + R G I Q+  G+Y++LPLG+     + +II+EE
Sbjct: 1   MKFSQFYAPTFKEAPKDATLPSHIFLTRAGFIEQNGSGLYNFLPLGKMVYSKIESIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E S+     A  W ESGRY+ +GKE+LR  DR +   + GPTHEE M ++ ++
Sbjct: 61  MDKAGALETSLSFTTPASFWRESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLNVVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+ LKFRDE RPRFG++R REF+MKDAYSF    E     +  M  +
Sbjct: 121 KITSYKQLPLNLYQVGLKFRDEARPRFGLLRCREFVMKDAYSFHKDEEDLTREFENMQGT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y +I  RLGL    + A+SG IGG  S EF+VLA  GE  +  CS
Sbjct: 181 YSKILKRLGLDFRVVEADSGAIGGSGSKEFMVLAQNGEDDILLCS 225



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  GTKYS  M ATF   +GK     MG YG+G  R+VA  +E+S D
Sbjct: 401 KLTKSKGIEVGHIFKLGTKYSAAMQATFLDENGKAKPFVMGCYGMGVSRLVAVAVEASFD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            +GI+W ++++PFK+ +I     D+   +    +Y  L K+G DV  DD  E+ G +   
Sbjct: 461 ERGIVWQEALSPFKLVIILSNIKDEKALNLGISLYEDLRKLGIDVLLDDRNERYGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG---IREDMSLEEV 434
            +L+GF   +I+G    ++    +K +  G   ++ D +L E+
Sbjct: 521 FELMGFNYALIIGKGLENNELELVKRKDLGKIKLKADTALTEL 563


>gi|29376876|ref|NP_816030.1| prolyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227519897|ref|ZP_03949946.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|81838863|sp|Q831W7|SYP_ENTFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118138617|pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With A Prolyl-Adenylate Analogue
           ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
 gi|118138618|pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With A Prolyl-Adenylate Analogue
           ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
 gi|118138619|pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With Atp, Manganese And Prolinol
 gi|118138620|pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With Atp, Manganese And Prolinol
 gi|29344341|gb|AAO82100.1| prolyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227072691|gb|EEI10654.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0104]
          Length = 572

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 143/226 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE R R G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 226



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 391 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 451 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 511 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 557


>gi|297191728|ref|ZP_06909126.1| prolyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151037|gb|EDY65325.2| prolyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 691

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 169/298 (56%), Gaps = 22/298 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG++ L+NV  ++REE 
Sbjct: 133 RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKRVLENVTRVVREEM 192

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 193 DAIGAQEVLLPALLPKEPYEATGRWEEYGAELFRLKDRKGADYLLGPTHEEIFTQLVKDQ 252

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF MKD+YSFD + EG   SY     +Y
Sbjct: 253 CTSYKDLPVILYQIQTKYRDEARPRSGILRGREFQMKDSYSFDTSDEGLAESYALHREAY 312

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK----------DFMDF 230
           +RIF RLGLK   + A SG +GG  S EF+  A  GE T V+C             F   
Sbjct: 313 VRIFERLGLKHKIVSAVSGAMGGSASEEFLAPAPAGEDTFVYCPSCDYAANTEAVTFALA 372

Query: 231 PI------PSENTDFDDIISLNSIVEQWTAPYAAT-----SDVHNEKLFDSLPENKRV 277
           P+      P E  D  D  ++ ++ +    P +AT       V  E +   +P N+ V
Sbjct: 373 PVEGAEHGPVEELDTPDTPTIETLADHLGVPASATLKNLLVKVDGEIVAVGVPGNREV 430



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYG+G  R VAA+ E + D +G+ 
Sbjct: 533 RAIEIGHIFQLGRKYADAFQLDVLGQNGKPVRVTMGSYGVGVSRAVAALAEQTADEQGLC 592

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  +AP  + +  + A   +  +    +  +L   G  V  DD  G   G +F  A+L+
Sbjct: 593 WPREIAPADVHV--VAAGKALQTELALDVAEQLGAAGLRVLVDDRAGVSPGVKFTDAELI 650

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P +++V  +  ++  +E+K R TG RE++++ + +
Sbjct: 651 GVP-KILVAGRRSAEGVLELKDRRTGEREELTVADAV 686


>gi|297562530|ref|YP_003681504.1| prolyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846978|gb|ADH68998.1| prolyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 582

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 144/218 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG+  L+NV  I+REE
Sbjct: 3   LRMSTLFLRTLREDPADAEVPSHKLLVRGGFVRRAAPGVYTWLPLGKIVLENVARIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P L   + +  +GR++ YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MDAIGAQEVLLPALLPREYYEATGRWEEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKG 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P T YQIQ KFRDE RPR GV+R REF MKD+YSFD+  EG + SY     +
Sbjct: 123 EYSSYKDFPVTLYQIQEKFRDEARPRAGVLRGREFHMKDSYSFDIDDEGLRASYADHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+R+F RLGL+ + + A SG +GG  S EF+ +A TGE
Sbjct: 183 YIRVFDRLGLEYVIVSATSGAMGGSASEEFLAVAPTGE 220



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 6/184 (3%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T DV   +  D  P+ +    +ARGIE+GHIF  G KY+        G DGK   + MG
Sbjct: 396 GTIDVAEVRDGDPSPDGRGTLYTARGIEIGHIFQLGRKYTDAFQVDALGPDGKPRRITMG 455

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R VAAV+E SHD KG++WP  VAP  + ++     +Q+  +   +I   L   
Sbjct: 456 SYGIGVSRAVAAVVEQSHDDKGVVWPREVAPADVHVVGTGKGEQI--EEALRIARELEAR 513

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  G   G +F  A+LLG P  VIVG + + D  VE++ R TG RE+++L E+
Sbjct: 514 GLRVLVDDRKGVSPGVKFTDAELLGVPTGVIVG-RGLKDGLVELRDRATGDREEVALAEI 572

Query: 435 INYA 438
           ++ A
Sbjct: 573 VDRA 576


>gi|163791590|ref|ZP_02185991.1| prolyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873139|gb|EDP67242.1| prolyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 568

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SHK++LR G I Q S G+YS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSKLFIPTLRDVPNEAEVLSHKMLLRAGYIRQISSGVYSYLPLANRVIEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P+L   +LW ESGRY++YG ++++L DR+ +  + GPTHEE  T + R 
Sbjct: 61  FEKIDAVEMLMPSLLPRELWEESGRYETYGDDLMKLQDRHGRDYLLGPTHEEAFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE RPR G++R REF+MKDAYSF  + E    +Y     +
Sbjct: 121 EITSYKRLPLSLYQIQTKFRDEKRPRSGLLRGREFIMKDAYSFHDSYESLDETYLDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    +  ++G +GG  S EF+ ++D GE  +  S
Sbjct: 181 YTRIFERCGLDFRSIIGDAGAMGGSNSKEFMAISDIGEDTIVYS 224



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIE+GHIF  GT+YS  M+AT    +G+   V MG YGIG  R+++A+ E     +G+
Sbjct: 403 AKGIEIGHIFKLGTRYSEAMNATVLDNNGRSIPVVMGCYGIGVTRLLSAITEQQATEEGL 462

Query: 339 IWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            WP  ++PF++ L  +N+KA DQV      ++Y  L   G  V  DD  E++G +F  +D
Sbjct: 463 NWPRHLSPFELHLVPVNMKADDQVT--LSNELYETLQHAGFSVLLDDRNERVGVKFKDSD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P+++ VG K   ++ VE+K R TG   ++  +E+++
Sbjct: 521 LIGLPIRITVGKK-AQENIVELKLRKTGEALEVRADELVD 559


>gi|254392125|ref|ZP_05007314.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294815425|ref|ZP_06774068.1| Prolyl-tRNA synthetase 1 [Streptomyces clavuligerus ATCC 27064]
 gi|326443777|ref|ZP_08218511.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197705801|gb|EDY51613.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294328024|gb|EFG09667.1| Prolyl-tRNA synthetase 1 [Streptomyces clavuligerus ATCC 27064]
          Length = 566

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/276 (40%), Positives = 159/276 (57%), Gaps = 19/276 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K L+NV  ++REE 
Sbjct: 7   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLENVTRVVREEM 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 67  DAIGAQEVLLPALLPKEPYEITGRWDEYGAELFRLKDRKGAEYLLGPTHEEIFTQLVKDQ 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF MKD+YSFD T EG   SY     +Y
Sbjct: 127 CSSYKDLPVILYQIQTKYRDEARPRSGILRGREFQMKDSYSFDTTDEGLAESYALHREAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE------------------TQVFC 223
           +RIF RLGL    + A SG +GG  S EF+  A  GE                  T V  
Sbjct: 187 IRIFRRLGLDHRIVSAVSGAMGGSASEEFLAPAAAGEDTFVHCPSCDYAANTEAVTYVAA 246

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           + + +D P   E  D  D  ++ ++ E    P +AT
Sbjct: 247 APEAVDHPA-VELLDTPDTPTIETLAEHLGVPASAT 281



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 407 RAIEIGHIFQLGRKYADAFQLDVLGQNGKPTRVTMGSYGIGVSRAVAALAEQTADEKGLC 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLL 398
           WP  +AP  + ++      Q+  +   ++  +L+  G  V  D+  G   G +F  A+L+
Sbjct: 467 WPAEIAPADVHVVAAGKAVQI--ELALEVADQLAAAGLRVLVDERPGVSPGVKFTDAELI 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  ++V  +  ++  VE+K R TG RE++ + E +
Sbjct: 525 GVP-TILVAGRRSAEGVVELKDRRTGEREELPVAEAV 560


>gi|116629465|ref|YP_814637.1| prolyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|282850819|ref|ZP_06260193.1| proline--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311110887|ref|ZP_07712284.1| proline--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273597|sp|Q044C3|SYP_LACGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116095047|gb|ABJ60199.1| Prolyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|282557771|gb|EFB63359.1| proline--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311066041|gb|EFQ46381.1| proline--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 565

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 110/222 (49%), Gaps = 16/222 (7%)

Query: 200 GPIGGDLSHEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           GPIG D + + IV  +T  G   V    +  D+   + N D D    ++   +  TA   
Sbjct: 334 GPIGADWADK-IVADETVKGLYNVVVGANETDYQYQNANLDRD--FKVDEFADIRTANEG 390

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
               V      D LP     S   IEVGHIF  GT Y+  M A F   +GK   V MGSY
Sbjct: 391 ELDPV------DHLPLKFTTS---IEVGHIFKLGTYYTKTMGADFLDNNGKAKPVIMGSY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A +E      GI WP  +APF + LI +K  D+   +  EK+   LS    
Sbjct: 442 GIGVTRMLSAAVEQHLTENGIAWPKEIAPFDVHLIQMKMKDEAQTELAEKLEKELS-TKY 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K
Sbjct: 501 DVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVK 541


>gi|227529103|ref|ZP_03959152.1| prolyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227350947|gb|EEJ41238.1| prolyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 580

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 140/218 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++++LP+  + +  V  IIR+E
Sbjct: 1   MQQSKILIPTKKEAPSDAEALSHKMMVRAGYIYQVSAGVWAYLPMAYRVIRKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MEKAGAVEMMMPALLPADLWKESGRYESYGDNLFKLKDRRDRDFIMGPTHEETFTEVIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQARA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAEVGE 218



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT YS  + A     +G+   V MGSYGIG  R+++AV E + D  G++W
Sbjct: 408 GIEIGHIFKLGTHYSKKLGAQVLDNNGRLVDVIMGSYGIGVSRLLSAVAEQTADDNGLVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PDS+APF + +I + A      +   ++   L K G DV  DD  E+ G +FA +DL+G 
Sbjct: 468 PDSIAPFDVHVIPVNAKKADQMEMANELTVALEKAGYDVLVDDRKERAGVKFADSDLIGI 527

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           P+++ VG K  SD  VE+K R TG   ++  EEV+N
Sbjct: 528 PIRITVGKK-ASDGIVEVKIRKTGETVEVKTEEVVN 562


>gi|116333948|ref|YP_795475.1| prolyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269368|sp|Q03QS8|SYP_LACBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116099295|gb|ABJ64444.1| Prolyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 569

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 142/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE  SH++MLR G I Q + G+Y++LPL  + L N+  IIREE
Sbjct: 1   MKQSQLLIPTLKEVPNDAEALSHQMMLRAGYIRQVTAGMYAYLPLAFRVLTNIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P +  A LW ESGRY++YG  + +  +R+D   I  PTHEE  T + R 
Sbjct: 61  MEKINAVEMLMPAVLPASLWQESGRYETYGPNLFKFKNRHDSDFILAPTHEETFTMLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++R REF+MKDAYSF L+ E     YN+M  +
Sbjct: 121 AIKSYKRLPLVMYQIQPKYRDEDRPRYGLLRGREFIMKDAYSFSLSDEDLDRIYNQMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL    +  + G +GG  S EF  +A  GE  +  S
Sbjct: 181 YENIFDRIGLNYRAIVGDGGAMGGKDSKEFSAIAPVGEDTIVYS 224



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 97/167 (58%), Gaps = 5/167 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GT+YS  + AT     G+   V MGSYGIG  R+++A+ E   D KG++
Sbjct: 404 KGIEIGHIFKLGTRYSDALGATVLDEGGRQKPVVMGSYGIGVSRLLSAIAEQQADDKGLV 463

Query: 340 WPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP ++APF I L  +N+K  DQ       ++  +L+  G  +  DD  E+ G +FA +DL
Sbjct: 464 WPRNIAPFDIHLVPVNLKKDDQA--QLTSELEEQLTAKGYRILTDDRKERPGVKFADSDL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P+++ +G K   +  VEIK R TG   ++  +EV +     F +
Sbjct: 522 MGIPVRITIGKK-AGEGIVEIKIRKTGETVEVIKDEVASTVEILFKD 567


>gi|77360564|ref|YP_340139.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875475|emb|CAI86696.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 544

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/194 (52%), Positives = 132/194 (68%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI + + G+Y+WLP G + L  V  I+REE N+  AIEM +P +Q ADLW ESGR+D +G
Sbjct: 1   MIRRVASGLYTWLPTGLRVLRKVENIVREEMNKANAIEMLMPVIQPADLWEESGRWDEFG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            E++R  DR+++    GPTHEEV+TD  R  I SY+ LP + YQIQ K RDE RPRFGVM
Sbjct: 61  PELMRFTDRHNRTFALGPTHEEVITDFVRKEISSYKQLPISLYQIQTKVRDERRPRFGVM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REF MKDAYSF L+ E    +Y  M  +Y  IF RL L   P+ A++G IGG +SHEF
Sbjct: 121 RAREFTMKDAYSFHLSDECLDATYQVMHKAYCNIFERLNLDYRPVIADTGSIGGSVSHEF 180

Query: 211 IVLADTGETQVFCS 224
            VLA++GE  +  S
Sbjct: 181 HVLAESGEDAIAFS 194



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 1/158 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M A      GK+  + MG YGIG  R+VAA IE ++D  GII
Sbjct: 379 RGIEVGHIFQLGTKYSQAMKAGVLNESGKNQIMTMGCYGIGVSRIVAAAIEQNNDQYGII 438

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +APF ++++ +  H      D    +Y  L   G DV +DD  E+ G  F   +L+
Sbjct: 439 WPQPIAPFDLAIVPMNMHKSHRIPDIATNLYQGLKDAGLDVLFDDRKERPGVMFNDMELI 498

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  +++G + + ++KVE+K+R TG +  + ++  I+
Sbjct: 499 GVPFTLVIGERNLDENKVELKNRRTGEKLMIDIDTAID 536


>gi|300361905|ref|ZP_07058082.1| proline--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300354524|gb|EFJ70395.1| proline--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 565

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDQQFDDQKGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 107/221 (48%), Gaps = 14/221 (6%)

Query: 200 GPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           GPIG D + + +      +   V    +  D+   + N D D    ++   +  TA    
Sbjct: 334 GPIGADWADKIVADETVKDLYNVVVGANETDYQYQNANLDRD--FKVDEFADIRTANEGE 391

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              V      D LP     S   IEVGHIF  GT Y+  M A F   +GK   V MGSYG
Sbjct: 392 PDPV------DHLPLKFTTS---IEVGHIFKLGTYYTKTMGADFLDNNGKAKPVIMGSYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A +E      GI WP  +APF I LI +K  D+   +  EK+   LS    D
Sbjct: 443 IGVTRMLSAAVEQHLTKNGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEKELS-TKYD 501

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K
Sbjct: 502 VLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVK 541


>gi|125625170|ref|YP_001033653.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|152112925|sp|A2RNT2|SYP_LACLM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124493978|emb|CAL98976.1| ProS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071979|gb|ADJ61379.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 616

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 142/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYETYGEDLYKLKNRDSSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +Y     +
Sbjct: 121 EITSYKKLPLNVYQIATKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYLDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 14/171 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R+++A++E        
Sbjct: 440 ARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSRLLSAILEQFARIYVE 499

Query: 332 ---SHDGK---GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                + K    I +P  +APF I L+ +   D+   +   ++  +L   G  V  DD  
Sbjct: 500 KTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEEKLRGKGYQVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++ +E++N
Sbjct: 560 ERAGVKFADSDLIGLPVRVTIGKK-AAEGIVEVKIRATGEVVEINKDELVN 609


>gi|315038578|ref|YP_004032146.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312276711|gb|ADQ59351.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 565

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 142/226 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEN 226



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E     +G+ WP
Sbjct: 406 IEVGHIFKLGTYYTKTMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVEQHLTERGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF+I ++ +K +     +  EK+  + S+   DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFEIHIVQMKMNKDDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 525 IRITIGKK-AADGIVEVKRPTDAKATEMSIDELDKFVNQEL 564


>gi|325957052|ref|YP_004292464.1| prolyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325333617|gb|ADZ07525.1| prolyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
          Length = 565

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 142/226 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEN 226



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E     +G+ WP
Sbjct: 406 IEVGHIFKLGTYYTKTMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVEQHLTERGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF+I ++ +K +     +  EK+  + S+   DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFEIHIVQMKMNKDDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 525 IRITIGKK-AADGIVEVKRPTDAKATEMSIDELDKFVNQEL 564


>gi|271963639|ref|YP_003337835.1| proline--tRNA ligase [Streptosporangium roseum DSM 43021]
 gi|270506814|gb|ACZ85092.1| Proline--tRNA ligase [Streptosporangium roseum DSM 43021]
          Length = 580

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 144/226 (63%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P DAE+ SHKL++R G + + + GIYSWLPLG+  L+NV  I+REE
Sbjct: 3   LRMSSLFLRTLRDDPADAEVPSHKLLVRAGYVRRVAPGIYSWLPLGKMVLENVTRIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G  E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ + 
Sbjct: 63  MNRMGGQEVLFPALLPREYYEATGRWTEYGDTLFRLQDRKGADYLLGPTHEEMFTDMVKG 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  +G K SY +   +
Sbjct: 123 EYSSYKDYPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDDGLKRSYEQHRET 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y+R F RLG+      A SG +GG  S EF+  A TGE T V C +
Sbjct: 183 YIRTFDRLGISYKICFATSGAMGGSASEEFLAPAATGEDTFVACHQ 228



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+        G DGK   V MGSYG+G  R VA + E  HD  G++
Sbjct: 418 RGIEIGHIFQLGRKYADAAKLDALGPDGKPIRVTMGSYGVGVSRAVAVLAEQRHDELGLV 477

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + ++      Q+  +A  ++   L   G  V  DD  G   G +F  A+LL
Sbjct: 478 WPREVAPVDVHVVGTGKDGQI--EAANRLAEDLQARGLRVLVDDRAGVSPGVKFKDAELL 535

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  +I+G + ++    E++ R+TG++E++ ++E  +
Sbjct: 536 GMPTILIIG-RGLAQGVAELRDRVTGVKEEIPIDEAAD 572


>gi|327183775|gb|AEA32222.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 565

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 142/226 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEN 226



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E     +G+ WP
Sbjct: 406 IEVGHIFKLGTYYTKTMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVEQHLTERGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF+I ++ +K +     +  EK+  + S+   DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFEIHIVQMKMNKDDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 525 IRITIGKK-AADGIVEVKRPTDAKATEMSIDELDKFVNQEL 564


>gi|78185232|ref|YP_377667.1| prolyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|114152270|sp|Q3AWR9|SYP_SYNS9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78169526|gb|ABB26623.1| Prolyl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 593

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/229 (47%), Positives = 145/229 (63%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEIASH+L+LR G I +   GIY +LPL  K +  + AI+R+E
Sbjct: 1   MRVSRLLLVTLRDVPAEAEIASHQLLLRGGYIRRIGSGIYGYLPLMWKVIQRITAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P L  A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNTAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF       +++Y +M
Sbjct: 121 AGELLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEADLQNTYLEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D
Sbjct: 181 DQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDD 229



 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 88/165 (53%), Gaps = 8/165 (4%)

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A  + VHN       PE   +  RGIEVGHIF  G KYS  M + F    GK  +  MG 
Sbjct: 414 AGEACVHN-------PEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTNEAGKTEHFWMGC 466

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD  GI WP ++AP++  ++     DQ   +  E +Y +L   G
Sbjct: 467 YGIGISRLAQAAVEQHHDDAGICWPAAIAPYEAIVVVANMQDQTQAELGESLYKQLLAAG 526

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +DD  E+ G +F  ADL+G P +V+VG +  SD  VE+  R
Sbjct: 527 VDALFDDRKERAGVKFKDADLIGIPWRVVVG-RDASDGVVELVER 570


>gi|238852615|ref|ZP_04643025.1| proline--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|238834761|gb|EEQ26988.1| proline--tRNA ligase [Lactobacillus gasseri 202-4]
          Length = 565

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 110/222 (49%), Gaps = 16/222 (7%)

Query: 200 GPIGGDLSHEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           GPIG D + + IV  +T  G   V    +  D+   + N D D    ++   +  TA   
Sbjct: 334 GPIGADWADK-IVADETVKGLYNVVVGANETDYQYQNANLDRD--FKVDEFADIRTANEG 390

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
               V      D LP     S   IEVGHIF  GT Y+  M A F   +GK   V MGSY
Sbjct: 391 ELDPV------DHLPLKFTTS---IEVGHIFKLGTYYTKTMGADFLDNNGKAKPVIMGSY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A IE      GI WP  +APF + LI +K  D+   +  EK+   LS    
Sbjct: 442 GIGVTRMLSAAIEQHLTENGIAWPKEIAPFDVHLIQMKMKDEDQTELAEKLEKELS-TKY 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K
Sbjct: 501 DVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVK 541


>gi|227510249|ref|ZP_03940298.1| prolyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189901|gb|EEI69968.1| prolyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 569

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYRAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYS 224



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+YS  ++A     +G+   V MGSYGIG  R+++A+ E + D  G+
Sbjct: 403 TRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMGSYGIGISRLLSAISEQNADENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAP+ + +I I    +V  +   +I  +L++ G +V  DD  E+ G +FA +DLL
Sbjct: 463 VWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTENGIEVLVDDRKERPGVKFADSDLL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ VG K   +  VEIK R  G   +  +EE+
Sbjct: 523 GIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEEL 557


>gi|86606966|ref|YP_475729.1| prolyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|114152267|sp|Q2JSB6|SYP_SYNJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86555508|gb|ABD00466.1| prolyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 609

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 147/230 (63%), Gaps = 5/230 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P +AE+ SHKL+LR G I + S GIY++LPL  + L  ++ I+REE 
Sbjct: 6   RLSQMLFVTLREDPAEAELISHKLLLRGGFIRRLSPGIYTYLPLLWRVLQKISDIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIF 118
           N  GA E  +P LQ A++W ESGR+D Y +    M  L DR  +    GPTHEEV+T + 
Sbjct: 66  NAIGAQECLLPQLQPAEIWRESGRWDVYTQAEGIMFALKDRQGREQALGPTHEEVITLLA 125

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  I+SYR LP   YQIQ KFRDE+RPRFG++R REFLMKDAYSF    E  + +Y  M+
Sbjct: 126 RDLIRSYRQLPQILYQIQTKFRDEIRPRFGLLRGREFLMKDAYSFHANEESLRQTYQDMY 185

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGETQVFCSKD 226
            +Y RI  R GL+   + A++G IGG    S EF+VLA  GE ++  + D
Sbjct: 186 RAYGRILRRCGLEFCVVEADAGAIGGPSAASQEFMVLASAGEDEILYTPD 235



 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P A   DV   +  D     P+    +ARGIE+GHIF  G K+SLPM A+F    G +  
Sbjct: 412 PLAEVVDVRKAQAGDRCLLNPDQILETARGIEIGHIFQLGLKFSLPMRASFTDEQGSEQP 471

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R+  A +E SHD  GIIWP ++AP+ + ++     D       EK+   
Sbjct: 472 LWMGCYGIGVSRLAQAAVEQSHDANGIIWPVAIAPYHVVVVVPNVSDPEQTKVAEKLVQE 531

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +  WDD  E+ G +F  ADL+G P ++  G + +   KVE+  R TG   ++ +
Sbjct: 532 LAAAGIETLWDDRDERAGVKFKDADLIGIPYRLTTG-RSLKQGKVELAERATGQAVEIPI 590

Query: 432 EEVINYASHRFS 443
           EEV+     R +
Sbjct: 591 EEVVATLKERIA 602


>gi|227549046|ref|ZP_03979095.1| prolyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078900|gb|EEI16863.1| prolyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 604

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/223 (44%), Positives = 144/223 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG + L  +  ++REE 
Sbjct: 15  RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRAAPGVYSWLPLGLRTLRKIETVVREEM 74

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA+E+  P L   + + ++ R+  YG ++ RL DR    M+ GPTHEE+ T   +S 
Sbjct: 75  DAMGALELLFPALLPREPYEQTNRWTEYGDDLFRLKDRKGADMLLGPTHEEMFTVAVKSM 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG + SY K   +Y
Sbjct: 135 FSSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDMTDEGLEQSYQKHRSAY 194

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF R+G++     A SG +GG  S EF+  +D+GE     S
Sbjct: 195 QRIFDRVGIRYEICEATSGAMGGSASEEFLAYSDSGEDTFVIS 237



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 3/144 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  M        GK     MGSYGIG  R++A V E  HD KG+
Sbjct: 440 ARGIELGHIFQLGRKYTEAMDVQILDEGGKRAVPTMGSYGIGVSRMMAVVAEQRHDEKGL 499

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP ++AP+++ ++ +   D     A E I   L   G +V +DD  +   G +F  A+L
Sbjct: 500 VWPVAIAPYQVHVV-VANKDAAALQAGEDIAGELDAAGLEVLFDDRPKTSPGVKFKDAEL 558

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           LG P  VI+G  F ++  VE++ R
Sbjct: 559 LGMPFIVILGRSF-AEGIVELRIR 581


>gi|258593203|emb|CBE69542.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) [NC10
           bacterium 'Dutch sediment']
          Length = 572

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 150/226 (66%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+E P +AE  SHKLM+R G++ Q + GIY  LPLGQ+ +D ++AIIREE
Sbjct: 1   MRWTRSLIPTLKEEPAEAEAISHKLMVRAGLVRQLAAGIYITLPLGQRVMDKISAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR    E+++P L  A+LW ++GR+ + G+EM RL DR  + M  G THEEV+  +   
Sbjct: 61  MNRIDGQEITMPVLHPAELWQQTGRWATIGEEMFRLYDRGKRQMCLGMTHEEVVAWLAAR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR+LP T+YQIQ K RDE RP+ GV+R+REF+MKD+YS D    G + SY     +
Sbjct: 121 EIRSYRDLPQTWYQIQTKLRDEARPKSGVLRTREFVMKDSYSLDRDDAGLEKSYELHKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSK 225
           Y RIF R GL    + ++ G +GG ++HEF+  ++ GE ++  C +
Sbjct: 181 YCRIFTRCGLSFHAVESDPGMMGGAVAHEFMAPSEAGEDEIALCDR 226



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 2/179 (1%)

Query: 260 SDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+H     D  P  E      R IE+G+IF  GTKYS+PM A +    G+++ + MGSY
Sbjct: 374 ADIHQVSNGDRCPHCEGSLRIERVIEIGNIFRLGTKYSIPMKAVYLSEAGEEYPIVMGSY 433

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+ AA +E  HD  GIIWP ++APF++ L+ +   DQ   +  E +Y++L + G 
Sbjct: 434 GIGLARIAAAAVEQHHDDLGIIWPSAIAPFQLHLLPVNMRDQKMAELAEALYSQLQQAGI 493

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +DD  E+ G +F  ADLLG P+++ +G++ + +  V++K R T     + L E ++
Sbjct: 494 ETLYDDRDERAGVKFKDADLLGLPMRMTIGTRTLKEGMVDLKIRKTAKEVQIPLSEAVS 552


>gi|116514305|ref|YP_813211.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122274963|sp|Q049U9|SYP_LACDB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116093620|gb|ABJ58773.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325126002|gb|ADY85332.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 565

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 138/221 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLQLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTI 221



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 3/139 (2%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E      G+ WP
Sbjct: 407 IEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTRLLSAVVEQHATENGVAWP 466

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I +I +K  D++     E + A+ +K   DV +DD  E+ G +F  ADL+G P
Sbjct: 467 KEIAPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKH 420
           +++ VG +  +D  VE+K 
Sbjct: 525 IRITVG-RDAADGIVEVKR 542


>gi|227524393|ref|ZP_03954442.1| prolyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
 gi|227088624|gb|EEI23936.1| prolyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
          Length = 569

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLILYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYRAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYS 224



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+YS  ++A     +G+   V MGSYGIG  R+++A+ E + D  G+
Sbjct: 403 TRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMGSYGIGISRLLSAISEQNADENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAP+ + +I I    +V  +   +I  +L++ G +V  DD  E+ G +FA +DLL
Sbjct: 463 VWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTENGIEVLVDDRRERPGVKFADSDLL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ VG K   +  VEIK R  G   +  +EE+
Sbjct: 523 GIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEEL 557


>gi|104774217|ref|YP_619197.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|122983932|sp|Q1G9P3|SYP_LACDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|103423298|emb|CAI98139.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 565

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 138/221 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLQLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTI 221



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 3/139 (2%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E      G+ WP
Sbjct: 407 IEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTRLLSAVVEQHATENGVAWP 466

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I +I +K  D++     E + A+ +K   DV +DD  E+ G +F  ADL+G P
Sbjct: 467 KEIAPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKH 420
           +++ VG +  +D  VE+K 
Sbjct: 525 IRITVG-RDAADGIVEVKR 542


>gi|239631344|ref|ZP_04674375.1| prolyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239525809|gb|EEQ64810.1| prolyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 570

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/218 (45%), Positives = 141/218 (64%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E  +  A
Sbjct: 2   FIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDEMTKIDA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           ++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+ +KSY+
Sbjct: 62  VKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRNELKSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +Y  IF 
Sbjct: 122 RMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHAYTNIFD 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           RLGL+   +  + G +GG  S EF  +AD GE  +  S
Sbjct: 182 RLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYS 219



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+
Sbjct: 398 TRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGL 457

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+
Sbjct: 458 VWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEDAGYSVLVDDRNERPGVKFADSDLI 517

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL+V VG K V D  VE+K R TG   ++  EE+I+
Sbjct: 518 GVPLRVTVGKKAV-DEIVELKLRKTGETIEVKKEELIS 554


>gi|290890493|ref|ZP_06553568.1| hypothetical protein AWRIB429_0958 [Oenococcus oeni AWRIB429]
 gi|290479889|gb|EFD88538.1| hypothetical protein AWRIB429_0958 [Oenococcus oeni AWRIB429]
          Length = 570

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/248 (43%), Positives = 155/248 (62%), Gaps = 12/248 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  +E P +A++ SH  MLR G I Q + GIY++LPL  + ++ + +IIREE
Sbjct: 1   MKQSKIFIPTEKEVPAEAQVKSHIFMLRAGFIRQVAGGIYAYLPLANRIINKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM +P +  A+LW ESGR+ +YG +M +L DR+D+  I  PTHEE  T I   
Sbjct: 61  MSRIDANEMLMPEMIPAELWKESGRFYTYGPQMYQLKDRHDREFIMAPTHEETFTKIISD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDELRP+ G++R REF+MKDAYSF    +G   +Y+ +  +
Sbjct: 121 EIKSYKKLPLILYQIQQKFRDELRPKNGLLRGREFIMKDAYSFSSDQKGLDDAYDLIESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE------------TQVFCSKDFM 228
           Y RIF R+GL    + A+SG +GG  S EF  +A TGE              +  +++F 
Sbjct: 181 YKRIFDRVGLDYREIIADSGSMGGKDSAEFQAIAATGEDIIAYSNSGKYAANIEMAEEFF 240

Query: 229 DFPIPSEN 236
           +  IP E+
Sbjct: 241 EKKIPDED 248



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 1/169 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K V  +GIE+GHIF  GT Y+  M    +   GK   + MG YGIG  R+++A+ E S+D
Sbjct: 400 KLVFTKGIEIGHIFKLGTFYTSKMGGQIQNEKGKLSDIIMGCYGIGISRLLSAIAEQSND 459

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG IWP +VAPF + LI +   ++   +  ++I   L + G +V  DD  E+ G +FA 
Sbjct: 460 PKGFIWPKAVAPFNVHLITMNTKNESQVNLAKQIDKNLQEAGFEVLVDDRKERPGVKFAD 519

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +DL+G P++V+VG +      VE+K R      D+S + +I +   + +
Sbjct: 520 SDLIGIPIRVVVGRQ-ADQQIVEVKARGQESTNDVSTDNLIAFLKDKLN 567


>gi|159901383|ref|YP_001547630.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894422|gb|ABX07502.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 570

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 143/224 (63%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK      +E P DAE+ SH L++R G + Q S GIYS LPL  ++   ++ IIREE
Sbjct: 1   MRMSKLATSTTKEAPNDAELISHSLLVRAGYVKQQSAGIYSLLPLCVRSTQKISQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+ +P + SADLW E+GRY+   +E+LR  DRN+K M+   THEEV+TDI R 
Sbjct: 61  MDAIDGQELLMPVVTSADLWRETGRYEGVTEELLRFKDRNNKDMVLNMTHEEVVTDIMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSYR +P   YQIQ K+RDE RPR G++R REF MKDAYSF  T E     Y ++  +
Sbjct: 121 YIKSYRQMPVMVYQIQTKYRDEARPRGGIIRLREFTMKDAYSFHATIEDLDQYYEQVLNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RI+ R GL    ++++ G +GG ++HEF+ +   GE T + C
Sbjct: 181 YKRIYQRCGLPVEVVQSDPGMMGGKIAHEFMAVTPAGEDTLILC 224



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 94/160 (58%), Gaps = 1/160 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           AR IEVG+IF  GTKYS  M   F    G+     MG YGIG  R++A++IE  +D +G+
Sbjct: 398 ARAIEVGNIFKLGTKYSAAMKCVFANEKGEMQPAIMGCYGIGVQRILASLIEKFNDARGM 457

Query: 339 IWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + P +VAP+++ ++          +   +++Y+ L   G  V  DD     G++F  ADL
Sbjct: 458 MLPITVAPYQVHVVGTDYQSNAETKSVADQLYSDLQAQGVTVLLDDRDVNAGNKFGDADL 517

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P+QVI+GS+ + + + E+K R TG    ++L +++++
Sbjct: 518 IGNPIQVIIGSRGLKNGQAEVKIRSTGETTMVALADLLSH 557


>gi|326776245|ref|ZP_08235510.1| prolyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|326656578|gb|EGE41424.1| prolyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 567

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 146/238 (61%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           ++IF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPHCDYAANTEAVTF 242



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 8/159 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G  GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 406 RAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVSRAVAALTEQTADDKGLC 465

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           WP  +AP  + ++   KA   ++  D  EK    L+  G  V  DD  G   G +F  ++
Sbjct: 466 WPREIAPADVHVVAAGKALQTELALDVSEK----LNAAGLRVLVDDRPGVSPGVKFTDSE 521

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P +++V  +  +D  +E+K R TG RE+++++E I
Sbjct: 522 LIGVP-KILVAGRRSADGVLELKDRRTGEREELTVDEAI 559


>gi|227513178|ref|ZP_03943227.1| prolyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
 gi|227083559|gb|EEI18871.1| prolyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
          Length = 569

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYCAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYS 224



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GT+YS  ++A     +G+   V MGSYGIG  R+++A+ E + D  G+
Sbjct: 403 TRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMGSYGIGISRLLSAISEQNADENGL 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAP+ + +I I    +V  +   +I  +L++ G +V  DD  E+ G +FA +DLL
Sbjct: 463 VWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTENGIEVLVDDRRERPGVKFADSDLL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ VG K   +  VEIK R  G   +  +EE+
Sbjct: 523 GIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEEL 557


>gi|118474251|ref|YP_891864.1| prolyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|152016592|sp|A0RNT1|SYP_CAMFF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118413477|gb|ABK81897.1| prolyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 567

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/224 (44%), Positives = 144/224 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K ++P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG++ L  V  I+R+E
Sbjct: 1   MKFTKLYVPTTKEAPKDATLPSHQFLIRAGFVAQIGSGLYNFLPLGKRVLRKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +   +LW +S RY  +GKE+LRL DR D   +  PTHEE + D+ R 
Sbjct: 61  MDKAGANEVALSFVVPGELWKQSRRYFKFGKELLRLKDRKDNDFLLAPTHEESIVDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI LKFRDE RPRFG++R REF+MKD YSF  +    K  ++ M  +
Sbjct: 121 KVTSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFIMKDGYSFHASEADLKREFDLMETT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  +  S
Sbjct: 181 YTKIFSRLGLNFRAVEADSGAIGGSGSKEFMVLAKNGEDDILIS 224



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 5/145 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  G +YS  M ATF   +GK     MG YGIG  R+VA ++E+SHD KG 
Sbjct: 405 TKGIEVGHIFQLGVRYSETMGATFLDENGKSKPFFMGCYGIGVSRLVAVMVEASHDEKGC 464

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IW    APF + +I  NIK  +Q+       + + L   G +V  DD  E+ G + A  +
Sbjct: 465 IWKKECAPFMVHIIVSNIKDTEQM--QFALNLESNLESSGVEVLLDDRNERFGVKMADFE 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L+G P  V+VG K + +++VE   R
Sbjct: 523 LIGVPFGVVVG-KGLQNAEVEFIKR 546


>gi|325685949|gb|EGD28012.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 565

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 138/221 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDNEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTI 221



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 3/139 (2%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E      G+ WP
Sbjct: 407 IEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTRLLSAVVEQYATENGVAWP 466

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I +I +K  D++     E + A+ +K   DV +DD  E+ G +F  ADL+G P
Sbjct: 467 KEIAPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKH 420
           +++ VG +  +D  VE+K 
Sbjct: 525 IRITVG-RDAADGIVEVKR 542


>gi|227890230|ref|ZP_04008035.1| prolyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227849232|gb|EEJ59318.1| prolyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 565

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 142/226 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  +++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEN 226



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E      GI WP
Sbjct: 406 IEVGHIFKLGTYYTDTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHLTENGIAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I LI +K  D+   +  EK+   LS    DV +DD  E+ G +F  ADL+G P
Sbjct: 466 KEIAPFAIHLIQMKMKDETQTELAEKLEKELS-AKYDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIK 419
           L++ +G K   D  VE+K
Sbjct: 525 LRITIGRK-AKDGIVEVK 541


>gi|319760426|ref|YP_004124364.1| prolyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039140|gb|ADV33690.1| prolyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 595

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 144/210 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P++ E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+E
Sbjct: 1   MRATQYLLTTLKEIPKNCETISHQLMLRSGMIRQISTGLYTWLPIGLRVLRKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    IE+S+P +Q A+LW +SGR+  YG E+LR  +R ++  + GPTHEE+++++   
Sbjct: 61  MNNISFIEISMPIIQPANLWKQSGRWSEYGPELLRFKNRVNQEFVLGPTHEEMISNLICK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+  P   YQ+  K+RDE+RPRFG++R++EF MKD YSF    +  +++YN ++  
Sbjct: 121 EIISYKQFPIKLYQMNTKYRDEIRPRFGLIRAKEFTMKDGYSFHTNNKCLQNTYNNIYHQ 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           Y  IF+R+GL    ++A++G  GG LSHEF
Sbjct: 181 YHTIFNRIGLNFHVVQADTGNTGGTLSHEF 210



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 6/161 (3%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE+GHIF  G KYS  + +  +  +  +  + MG YGIG  R++  +IE ++D  GIIWP
Sbjct: 430 IEIGHIFQLGDKYSRSIYSCIQKYNKFNIKIIMGCYGIGITRIIPTIIEQNYDQYGIIWP 489

Query: 342 DSVAPFKISLINIKAHDQV-CRDACEKIYARL-SKVGCDVFWDDMGEQIGSQFAVADLLG 399
           DS+APFK+++I I  H  V  R+  E++Y +  S +G DVF  D  E  G  FA  DL+G
Sbjct: 490 DSIAPFKLAIIPINMHVSVNVRNTTEELYTQFKSIIGSDVFIYDRKENPGIMFADIDLIG 549

Query: 400 FPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVIN 436
            P  +++  + +++ +VE KHR     T I+ D+ L+ +IN
Sbjct: 550 IPHILVISDRNLNNQEVEYKHRKTRTTTKIKLDVILQFLIN 590


>gi|24656200|ref|NP_647737.1| Prolyl-tRNA synthetase [Drosophila melanogaster]
 gi|7292265|gb|AAF47674.1| Prolyl-tRNA synthetase [Drosophila melanogaster]
          Length = 458

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 210/423 (49%), Gaps = 43/423 (10%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPI 232
           Y  +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +  CS     F  
Sbjct: 182 YTLVNAAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSS--CGFAG 239

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            SE            +    + P   +SD+                 RG+EV H F  G 
Sbjct: 240 NSE-----------VVKAPASCPSCNSSDLKE--------------VRGVEVAHTFLLGD 274

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI
Sbjct: 275 KYSKPLGATFLNTTGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLI 334

Query: 353 NIKAHDQVCRDACEKIYARLSKVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
             K   +   +A       L  VG  C   ++  DD  E  IG +   A  LG PL ++V
Sbjct: 335 GPKQGSKEQPEAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVV 394

Query: 407 GSK 409
           G+K
Sbjct: 395 GAK 397


>gi|256851262|ref|ZP_05556651.1| prolyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260660686|ref|ZP_05861601.1| prolyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|282934730|ref|ZP_06339973.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297206129|ref|ZP_06923524.1| proline--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256616324|gb|EEU21512.1| prolyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260548408|gb|EEX24383.1| prolyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|281301305|gb|EFA93606.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297149255|gb|EFH29553.1| proline--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 565

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA  ASHK+M+R G I Q + G+YS+LPLG + L     II EE
Sbjct: 1   MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATKEQLDKQFDDQKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 91/153 (59%), Gaps = 2/153 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E +    G+ WP
Sbjct: 406 IEVGHIFKLGTYYTETMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVEQNLTEHGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF + LI +K  D+V     E +YA+ S    DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFALHLIQMKMKDEVQTKLAESLYAKFSD-KYDVLYDDRNERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L++ +G K  +D  VE+K  L     +++L E+
Sbjct: 525 LRITIGKK-AADGIVEVKRPLDEKASEVTLAEL 556


>gi|301168478|emb|CBW28068.1| proline tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 573

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 104/228 (45%), Positives = 151/228 (66%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F    +E P DAEI SH+LM+R G+IH+   G+YS+LP G +++  V  IIREE
Sbjct: 1   MKLSTGFWQTYKEVPADAEIPSHQLMVRAGLIHKMGSGLYSYLPFGYRSIRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +  +   +LW ESGR+D+ G +ML++ D+  + +   PT+EE +TDIFR 
Sbjct: 61  LDKAGCHEILMSMVTPGELWQESGRWDAMGDQMLKVKDKGGRDLCLSPTNEEAVTDIFRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+NLP T YQI  KFRDELRPRFG+MR REF MKD YSF +  +     Y+++F +
Sbjct: 121 TIKSYKNLPVTLYQINTKFRDELRPRFGLMRGREFTMKDGYSFHIDKDSLDEVYDRIFKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQV-FCSK 225
           Y  IF R GL+   + A++G +      +HEF V+A+TGE +V +C++
Sbjct: 181 YEAIFTRAGLEFSAVEADAGAMADSDQKTHEFQVIANTGEDEVIYCNE 228



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KY+  M  T   ++GK     MG YGIG  RVVAA +E  HD KGI+
Sbjct: 409 RGIEVGHIFQLGDKYTKAMGTTVLDSNGKAMNPLMGCYGIGVTRVVAAAVEQHHDDKGIV 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++AP+ +    I    +  ++  EKIY  + +   +V +DD     G +F  ADLLG
Sbjct: 469 WPMALAPYHVYFAEITKSAE-NKELAEKIYNEILEANIEVVFDDRKAGPGFKFKDADLLG 527

Query: 400 FPLQVIVGSK-FVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PLQ++ G + F  D  +EI+ R TG    +  E+V++
Sbjct: 528 LPLQLVFGERDFKKDGMLEIRIRKTGESLKVKPEDVVS 565


>gi|222823773|ref|YP_002575347.1| prolyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254782892|sp|B9KGB1|SYP_CAMLR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222538995|gb|ACM64096.1| prolyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 565

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 143/222 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK++    +ENP+DA + SH  +++   I Q   G+Y++LPLG++ LD +  II+EE
Sbjct: 1   MKFSKFYAISTKENPKDATLPSHIFLVKGAFIEQIGSGLYNFLPLGKRVLDKIKNIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+++     A+LW ESGR++ +GKE+LR  DR +   + GPTHEE M  + R+
Sbjct: 61  MDKAGALEVNLSFNTPAELWKESGRFNVFGKELLRFKDRKENDFVLGPTHEEAMVALIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF  +       +N M  +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHASEADLDKEFNLMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y +I  RLGL    + A+SG IGG  S EF+VLA  GE  + 
Sbjct: 181 YSKILTRLGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDIL 222



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 3/165 (1%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           ++K   ++GIEVGHIF  G KYS  M+A++   +GK  +  MG YG+G  R+VA  IE+S
Sbjct: 399 QHKLKQSKGIEVGHIFKLGKKYSQAMNASYLDENGKAQFFTMGCYGMGVSRLVAVAIEAS 458

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD KG IW  ++APF + +I     D    +  E+IY        ++ +DD  E+ G + 
Sbjct: 459 HDEKGCIWNKTLAPFVLDIIVSNIKDIKAMEFAEQIYTHFKDK--EILFDDRNERFGVKI 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              +L+GFP  +++G    +D +VE+ HR T  ++ +  +EVI++
Sbjct: 517 NDFELMGFPYALVIGKSLEND-EVELIHRNTLEKQVLKTQEVISH 560


>gi|300812560|ref|ZP_07092977.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496433|gb|EFK31538.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 565

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 138/221 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTI 221



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 3/139 (2%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E      G+ WP
Sbjct: 407 IEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTRLLSAVVEQHATENGVAWP 466

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             + PF I +I +K  D++     E + A+ +K   DV +DD  E+ G +F  ADL+G P
Sbjct: 467 KEITPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKH 420
           +++ VG +  +D  VE+K 
Sbjct: 525 IRITVG-RDAADGIVEVKR 542


>gi|227892604|ref|ZP_04010409.1| prolyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227865589|gb|EEJ73010.1| prolyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 565

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 139/221 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +
Sbjct: 181 YKRIFKRAGVSVHPVIADSGTMGGKNSTEFQAPAAVGEDTI 221



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E      G+ WP
Sbjct: 406 IEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVEQHLTEHGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I ++ +K +     +  EK+  + S    DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFSIHIVQMKMNKDDQTELAEKLEKKFSD-KYDVLYDDRKERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +++ VG K  +D  VE+K        +MS++E+  + +   
Sbjct: 525 IRITVGKK-AADGIVEVKRPTDEKATEMSIDELDKFVNQEL 564


>gi|227432324|ref|ZP_03914317.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351930|gb|EEJ42163.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 572

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/230 (44%), Positives = 148/230 (64%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L++ P +AE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLRDIPAEAEVKSHQLLLKAGYIRPIAAGMFSYLPLAKRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A EM VP +  A+LW  SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDKIDANEMLVPEVLPAELWQRSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLIAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDEAFHNMEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  IF RLGL+   +  ++G +GG  S EF   A  GE  +  S D  D+
Sbjct: 181 YTNIFDRLGLEYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYS-DATDY 229



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 1/149 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E   D  G++W
Sbjct: 407 GIEIGHIFKLGTRYSKTLGAQVLDNNGRQTDVIMGSYGIGVSRLLSAIAEQKADEDGLVW 466

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SVAPF+I ++ I   D+      E++   L   G +V  DD  E+ G +FA ADL+G 
Sbjct: 467 PASVAPFEIHIVPINMKDEDQARVAEQLETLLVAQGMEVLVDDRKERAGVKFADADLIGL 526

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           P+++ VG K   D  VE+K R +    +M
Sbjct: 527 PIRITVGKKADEDV-VEVKVRASNTNIEM 554


>gi|42519365|ref|NP_965295.1| prolyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|81832202|sp|Q74IS2|SYP_LACJO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41583653|gb|AAS09261.1| prolyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 565

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/225 (46%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 2/138 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E      GI WP
Sbjct: 406 IEVGHIFKLGTYYTDTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHLTENGIAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I LI +K  D+      EK+   LS    DV +DD  E+ G +F  ADL+G P
Sbjct: 466 KEIAPFAIHLIQMKMKDETQTKLAEKLEKELS-AKYDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIK 419
           L++ +G K   D  VE+K
Sbjct: 525 LRITIGRK-AKDGIVEVK 541


>gi|254447045|ref|ZP_05060512.1| prolyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198263184|gb|EDY87462.1| prolyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 522

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 131/175 (74%), Gaps = 1/175 (0%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           L  V AI+REE N  G +E+ +PT+Q  +LW ESGR + YG E+LRL+DR+++   YGPT
Sbjct: 2   LKKVEAIVREEMNSAGGVELLMPTIQPTELWQESGRLEQYGPELLRLSDRHERPFCYGPT 61

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           HEEV+TD+ R  IKSY+ LP  FYQIQLKFRDE+RPRFGVMR+REF+MKDAYSF L  + 
Sbjct: 62  HEEVITDLARREIKSYKQLPVNFYQIQLKFRDEIRPRFGVMRAREFVMKDAYSFHLDADS 121

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FC 223
            +++Y  M+ +Y  IF RLGL+   + A++G IGG+ SHEF VLAD+GE  + FC
Sbjct: 122 LQNTYEAMYRAYSNIFTRLGLRFRAVHADTGSIGGNASHEFHVLADSGEDAIAFC 176



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M AT    +GKD  + MG YGIG  RV+AA IE +HD KGI+
Sbjct: 359 RGIEVGHIFQLGTKYSESMGATVLDENGKDSVMTMGCYGIGVTRVIAAAIEQNHDNKGIV 418

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APFK++++ +  +  +  RD  E++Y +    G DV  DD   + G +FA  +L+
Sbjct: 419 WPDNIAPFKLAIVPLNQNKSERVRDYAEELYRQCQSKGIDVVLDDRDARPGVKFADIELV 478

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P +++VG + + +  +E K R      D+ L+++
Sbjct: 479 GIPHRIVVGDRGLDNGALEYKGRGDADSRDIPLDQL 514


>gi|182435611|ref|YP_001823330.1| prolyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|226701340|sp|B1VYP2|SYP_STRGG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|178464127|dbj|BAG18647.1| putative prolyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 146/238 (61%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           ++IF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPNCDYAANTEAVTF 242



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 8/159 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G  GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 406 RAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVSRAVAALTEQTADDKGLC 465

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           WP  +AP  + ++   KA   ++  D  EK    L+  G  V  DD  G   G +F  ++
Sbjct: 466 WPREIAPADVHVVAAGKALQTELALDVSEK----LNAAGLRVLVDDRPGVSPGVKFTDSE 521

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P +++V  +  +D  +E+K R TG RE+++++E I
Sbjct: 522 LIGVP-KILVAGRRSADGVLELKDRRTGEREELTVDEAI 559


>gi|329667116|gb|AEB93064.1| prolyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 565

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/225 (46%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E      GI WP
Sbjct: 406 IEVGHIFKLGTYYTDTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHLTENGIAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I LI +K  D+   +  EK+   LS    DV +DD  E+ G +F  ADL+G P
Sbjct: 466 KEIAPFAIHLIQMKMKDETQTELAEKLEKELS-AKYDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIK 419
           L++ +G K   D  VE+K
Sbjct: 525 LRITIGRK-AKDGIVEVK 541


>gi|311744140|ref|ZP_07717946.1| proline--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313270|gb|EFQ83181.1| proline--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 593

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 143/218 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FL  L+++P DAE+ SH+L++R G + + + GIYSWLPLG K L  V AI+REE
Sbjct: 1   MRMSRLFLRTLRDDPADAEVPSHRLLVRAGYVRRVAPGIYSWLPLGLKVLARVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  S R+  YG  + RL DR    ++ GPTHEE+ T + + 
Sbjct: 61  MEAIGAQEVRFPALLPREPYEASNRWTEYGPNLFRLTDRKGADLLLGPTHEELFTLLVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G + SY     +
Sbjct: 121 LYGSYKDLPLSIYQIQTKYRDEARPRAGILRGREFIMKDSYSFDVDDAGLEASYQAHRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+RIF RLG + + + A+SG +GG  S EF+ ++DTGE
Sbjct: 181 YVRIFDRLGFEYVVVHADSGAMGGSASEEFLAVSDTGE 218



 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 4/172 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAAV+ESSHD  GI
Sbjct: 420 ARGIEMGHIFQLGRKYAEVLDLKVLDENGKLVTVTMGSYGVGVSRAVAAVVESSHDDLGI 479

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVAD 396
           +WP ++AP+ + LI     D+       ++Y  L   G DV +DD   +I  G +F  A+
Sbjct: 480 VWPRALAPYDVHLIA-AGKDEAVHLGAARLYDELRAAGLDVLFDDRPGKISLGVKFKDAE 538

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           LLG P  V+VG  F +D  VE+K R TG R D+ +++++   S      RP+
Sbjct: 539 LLGMPTIVVVGKGF-ADGVVEVKDRATGDRSDVPVDDLVELLSASVREGRPL 589


>gi|268319258|ref|YP_003292914.1| hypothetical protein FI9785_773 [Lactobacillus johnsonii FI9785]
 gi|262397633|emb|CAX66647.1| proS [Lactobacillus johnsonii FI9785]
          Length = 565

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/225 (46%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E      GI WP
Sbjct: 406 IEVGHIFKLGTYYTDTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHLTENGIAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I LI +K  D+   +  EK+   LS    DV +DD  E+ G +F  ADL+G P
Sbjct: 466 KEIAPFAIHLIQMKMKDETQTELAEKLEKELS-AKYDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIK 419
           L++ +G K   D  VE+K
Sbjct: 525 LRITIGRK-AKDGIVEVK 541


>gi|116617800|ref|YP_818171.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271999|sp|Q03YC4|SYP_LEUMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116096647|gb|ABJ61798.1| Prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 572

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/230 (44%), Positives = 148/230 (64%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L++ P +AE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLRDIPAEAEVKSHQLLLKAGYIRPIAAGMFSYLPLAKRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A EM VP +  A+LW  SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDKIDANEMLVPEVLPAELWQRSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLIAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDEAFHNMEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  IF RLGL+   +  ++G +GG  S EF   A  GE  +  S D  D+
Sbjct: 181 YTNIFDRLGLEYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYS-DATDY 229



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 1/149 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E   D  G++W
Sbjct: 407 GIEIGHIFKLGTRYSKTLGAQVLDNNGRQTDVIMGSYGIGVSRLLSAIAEQKADEDGLVW 466

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SVAPF I ++ I   D+      E++   L   G +V  DD  E+ G +FA ADL+G 
Sbjct: 467 PASVAPFDIHIVPINMKDEDQARVAEQLETLLVAQGMEVLVDDRKERAGVKFADADLIGL 526

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           P+++ VG K   D  VE+K R +    +M
Sbjct: 527 PIRITVGKKADEDV-VEVKVRASNTNIEM 554


>gi|27820035|gb|AAO25049.1| GM03563p [Drosophila melanogaster]
          Length = 458

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 209/423 (49%), Gaps = 43/423 (10%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G +   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGFVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPI 232
           Y  +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +  CS     F  
Sbjct: 182 YTVVNAAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSS--CGFAG 239

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            SE            +    + P   +SD+                 RG+EV H F  G 
Sbjct: 240 NSE-----------VVKAPASCPSCNSSDLKE--------------VRGVEVAHTFLLGD 274

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI
Sbjct: 275 KYSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLI 334

Query: 353 NIKAHDQVCRDACEKIYARLSKVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
             K   +   +A       L  VG  C   ++  DD  E  IG +   A  LG PL ++V
Sbjct: 335 GPKQGSKEQPEAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVV 394

Query: 407 GSK 409
           G+K
Sbjct: 395 GAK 397


>gi|260905197|ref|ZP_05913519.1| prolyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 615

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 143/218 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+   +E+P  AE+ASHKL+ R G I + + GIY+WLPLG + L  + AI+REE
Sbjct: 3   LRMSSLFVRTQKEDPVGAEVASHKLLHRAGYIRRSAPGIYTWLPLGLQVLGKIEAIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+ E+  P L  AD + +SGR++++G ++  L DR D   I  PTHEEV T + + 
Sbjct: 63  MARAGSQEVHFPGLLPADPYRKSGRWEAFGPDLFHLKDRKDNDYILAPTHEEVFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQ+Q K+RDE RPR G++R REF+MKDAYSFD+   G   SY  M V+
Sbjct: 123 LYSSYKDLPLSIYQVQTKYRDEARPRAGLLRGREFIMKDAYSFDIDDAGLDASYEAMRVA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           YLR F RLG+  +P++A  G +GG  + EFI  ++ GE
Sbjct: 183 YLRAFARLGVPCLPVKATPGAMGGSGTEEFIYPSEVGE 220



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+E+G IF  G KY+  +       +GK   V MGSYG+G  RV+A + E  H   G+
Sbjct: 432 ARGVEIGQIFKLGRKYAEALDLKVLDQNGKATTVTMGSYGLGVTRVMACIAEEYHSEGGL 491

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADL 397
           +WP  +AP  + +I     +++  +A EK+ A L   G  V  DD +    G +FA A+L
Sbjct: 492 LWPQHLAPADVHIIAAGKGEEIA-EAAEKLTAELESEGVSVLLDDRLKVSPGFKFADAEL 550

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G P  ++VG + ++D  VE+++RL   ++++ + EV+
Sbjct: 551 IGIPTVIVVG-RGLADGVVEVRNRLADEKQEVPVAEVV 587


>gi|116748707|ref|YP_845394.1| prolyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|152112959|sp|A0LHQ7|SYP_SYNFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116697771|gb|ABK16959.1| prolyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 581

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 147/226 (65%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+  L E P++AE  SH L+LR   IH  + G+YS LPLG +  + + AI+REE
Sbjct: 1   MRYSKYFIHTLFEVPKEAETPSHILLLRGCYIHPVAAGVYSLLPLGHRVAEKIKAILREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    +E+++P L  A+LW +S RY   G+E+ R+ DR D+  +   THEEV+TDI R 
Sbjct: 61  LNAIEGLEVTMPVLNPAELWKKSSRYYDIGQELFRIKDRKDREFVLAMTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   YQIQ K RDE RPR G++R REF M DAYSF          Y ++F +
Sbjct: 121 FLRSYRHLPVMLYQIQTKIRDEARPRAGLLRVREFFMNDAYSFHPDFADLDAYYPRIFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           YLRIF R GL ++P+ A+SG +GG  SHEF++ +  GE + V C++
Sbjct: 181 YLRIFTRCGLTTVPIEADSGIMGGTGSHEFMLESPNGEDRFVVCTQ 226



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 87/148 (58%), Gaps = 4/148 (2%)

Query: 280 RGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           RGIE+GH F  GTKY+    M AT+  A G    V MG YGIG  R++A+ +E  HD  G
Sbjct: 404 RGIELGHTFKLGTKYTAAESMDATYLDAAGNQQRVVMGCYGIGVERLMASAVEQWHDEGG 463

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + +P S+APF++ L ++    ++  +A + +Y RL     D  +DD  E  G +   ADL
Sbjct: 464 MSFPYSIAPFQVILCSLGRKPEIL-EAAQALYERLG-AHYDTIYDDRDESPGVKLKDADL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           LG P++V+V  K +   +VEIK R TG+
Sbjct: 522 LGVPIRVVVSQKLLQKGEVEIKVRRTGV 549


>gi|154148423|ref|YP_001406459.1| prolyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|166980113|sp|A7I1R8|SYP_CAMHC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|153804432|gb|ABS51439.1| prolyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 569

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 98/222 (44%), Positives = 143/222 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK+F P L+E P+DA + SH  ++R G I Q   G+Y++LPLG+  ++ + A+I++E
Sbjct: 1   MKFSKFFAPTLKEAPKDAILPSHVFLIRAGFIEQLGSGLYNFLPLGEMVIEKIKAVIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA++++   +  ++ W ESGRY+ YGKE+LR+ DR +   +  PT+EE    +  +
Sbjct: 61  MDKTGALQVNFSFVTPSEFWQESGRYNVYGKELLRIKDRKENGFVLSPTNEESSVKMIAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 KITSYKQLPIHIYQINTKFRDEARPRFGLLRGREFIMKDGYSFHANMEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y  IF RLGL    + A+SG IGG  S EF+VLA  GE  + 
Sbjct: 181 YTNIFSRLGLNFRAVEADSGAIGGSGSKEFMVLAQNGEDDIL 222



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A +IE+ HD KG I
Sbjct: 407 KGIEVGHIFQLGQKYSKAMNAIFLDENGKAVPFFMGCYGIGVSRLLAVMIEAGHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W    APFK+ +I   + D+   +   ++Y +    G     DD  E+ G +    +L+G
Sbjct: 467 WNTQTAPFKLEIIISNSKDEDASNFAIQLYEKCKNAGISTLLDDRKERFGVKMNDFELIG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
           FP  V+VG K + D  VE+  R
Sbjct: 527 FPFAVLVG-KGLKDGNVELIER 547


>gi|238854745|ref|ZP_04645075.1| proline--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260663977|ref|ZP_05864830.1| prolyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282932864|ref|ZP_06338261.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313472268|ref|ZP_07812760.1| proline--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238832535|gb|EEQ24842.1| proline--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239529664|gb|EEQ68665.1| proline--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260561863|gb|EEX27832.1| prolyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281302899|gb|EFA95104.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 565

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA  ASHK+M+R G I Q + G+YS+LPLG + L     II EE
Sbjct: 1   MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E +    G+ WP
Sbjct: 406 IEVGHIFKLGTYYTETMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVEQNLTEHGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF + LI +K +D+      E +  + S+   DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFTLHLIQMKMNDEDQTKLAESLETKFSE-KYDVLYDDRKERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIK 419
           +++ +G K  +D  VE+K
Sbjct: 525 IRITIGKK-AADGIVEVK 541


>gi|300173485|ref|YP_003772651.1| prolyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887864|emb|CBL91832.1| Prolyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 571

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/230 (43%), Positives = 146/230 (63%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++S+LP+ ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREIPADAEVKSHQLLLKAGFIRPVAAGMFSYLPMAKRVLNKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A EM VP +  A+LW +SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MNAIDANEMLVPEILPAELWEKSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLMSD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF     G   +++ M  +
Sbjct: 121 DIKSYKKLPLVVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDQAFHNMETA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y++IF R+GL    +  ++G +GG  S EF   A  GE  +    D  D+
Sbjct: 181 YIKIFDRIGLSYRAIVGDAGAMGGSDSKEFSAPAAAGE-DIIAYSDATDY 229



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 5/168 (2%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT+YS  + A     +G+   + MGSYGIG  R+++A++E   D  G+IW
Sbjct: 407 GIEIGHIFKLGTRYSKVLGAQVLNENGRQTDMIMGSYGIGVSRLLSAIVEQKADADGLIW 466

Query: 341 PDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           P +VAPF + +  +NIK  DQV      ++   L+  G +V  DD  E+ G +FA ADL+
Sbjct: 467 PANVAPFDVHIVPVNIKDADQVR--VAGQLETLLTTQGLEVLVDDRKERAGVKFADADLI 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P+++ VG K  S+  VE+K R +    +M L EV++  S   S ++
Sbjct: 525 GLPIRITVGKK-ASEDIVEVKVRASNTNIEMRLSEVVDSVSVLLSGDK 571


>gi|281357583|ref|ZP_06244070.1| prolyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281315840|gb|EFA99866.1| prolyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 575

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 143/218 (65%), Gaps = 1/218 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E+P+DA+  SHK ++R G +   S GIYS LPLG++ ++ + AIIREE NR    E+ 
Sbjct: 9   IKEDPKDAKTVSHKFLVRGGYVRPVSAGIYSLLPLGKRIVEKIEAIIREEMNRIEGQEVL 68

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +  ADLW ESGRY+S G E+LR  DRNDK MI   THEE +  + R+ + SY+ LP 
Sbjct: 69  MPVVLPADLWKESGRYESVGAELLRFRDRNDKPMILAMTHEEGIVHLVRTELNSYKQLPV 128

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQIQ K+RDE RPR G++R REF MKDAYSF       +  Y +   +Y RIF R+G+
Sbjct: 129 MLYQIQTKYRDEARPRAGLIRVREFTMKDAYSFHTDQADLEKYYYRCHEAYERIFRRVGM 188

Query: 191 KSI-PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           K++  + A SG +GG +SHEF+ + D GE  V  + D+
Sbjct: 189 KNVLSIEANSGMMGGKVSHEFMAICDCGEDTVITNADY 226



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 98/154 (63%), Gaps = 2/154 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIEVG+IF  GTKY+  M   +   DGK H + MG YGIG  R +AAVIE S D  G 
Sbjct: 404 SRGIEVGNIFQLGTKYTESMHCDYLDRDGKSHPMIMGCYGIGVGRAMAAVIEQSCDEYGP 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+AP+++ L  I        +ACEK+YA L+  G +V +DD GE+ GS F+ ADL+
Sbjct: 464 IWPMSIAPYQVELCAINPDKAGVGEACEKLYADLTAAGIEVLYDDRGEKAGSMFSDADLI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           G PL+++V  K ++D+ VE K R  G R+   LE
Sbjct: 524 GIPLRLVVSPKTLADNAVEFKVR--GSRDAEKLE 555


>gi|84394652|ref|ZP_00993343.1| prolyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84374725|gb|EAP91681.1| prolyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 551

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 138/205 (67%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E +  GA+E+ +P +Q  +LW 
Sbjct: 2   SHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAVEILMPVVQPFELWE 61

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+ I SY+ LP   YQIQ KFRD
Sbjct: 62  ETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRNEISSYKQLPLNLYQIQTKFRD 121

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E RPRFGVMR+REF M DAYSFD+  EG + SY  M  +Y + F R+GL+  P+ A+SG 
Sbjct: 122 ERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDAYCKAFDRMGLEYRPVLADSGA 181

Query: 202 IGGDLSHEFIVLADTGETQVFCSKD 226
           IGG  S EF VLA++GE  +  S +
Sbjct: 182 IGGSGSQEFHVLAESGEDLIAFSSE 206



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 104/165 (63%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK   ++MG YGIG  RVVA+ IE +HD  GI 
Sbjct: 387 RGIEVGHIFQLGNTYSKAMNCNVLGPDGKSVILEMGCYGIGVSRVVASAIEQNHDKFGIT 446

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF++++I +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+
Sbjct: 447 WPDALAPFQVAIIPMNMHKSERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELV 506

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R TG +E ++++ VI +   + +
Sbjct: 507 GIPHTIVIGDRSMDEGNFEYKNRRTGDKEVIAMDTVIEHLKAQLA 551


>gi|33519754|ref|NP_878586.1| prolyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|81836111|sp|Q7VRC8|SYP_BLOFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33504099|emb|CAD83360.1| prolyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 581

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 105/266 (39%), Positives = 160/266 (60%), Gaps = 2/266 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  ++E P+  E  SH+LMLR+GM+ Q S G+Y+WLP G + L  +  II EE
Sbjct: 1   MRTTQYLLATIKEIPKSCEPISHQLMLRSGMVRQISSGVYTWLPTGLRVLKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G +E+ +P  Q A+LW +SGR+  YG E+LR  +R ++  + GPTHEE++TD+  +
Sbjct: 61  MNKIGFLEIFMPITQPANLWKQSGRWSEYGLELLRFKNRTNQKFVLGPTHEEMITDLVCN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S++  P   YQI  K+RDE RP+FGV+RS+EF+MKD YSF +  +  + +Y  ++  
Sbjct: 121 EILSHKQFPIKLYQINTKYRDEARPQFGVIRSKEFIMKDGYSFHIHQKSLEDTYYNIYQQ 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT--GETQVFCSKDFMDFPIPSENTD 238
           Y  IF R+GLK   ++A+ G IGG +SHEF    +    ET +F      D    +   +
Sbjct: 181 YHIIFKRIGLKFCVVQADPGNIGGIVSHEFQAYYNNTQNETAIFTETFNKDMSNINTRKN 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHN 264
            D +I+   I+         ++D HN
Sbjct: 241 NDIVINNIHILNTIQTIKLTSADFHN 266



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 4/168 (2%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE+GHIF  G KYS  +++  +  +  +  + MG YGIG  R+V  VIE  HD  GIIWP
Sbjct: 414 IEIGHIFQLGKKYSNCINSCIQKKNKDNLNITMGCYGIGITRIVPMVIEQHHDKHGIIWP 473

Query: 342 DSVAPFKISLINIKAHDQV-CRDACEKIYARLSK---VGCDVFWDDMGEQIGSQFAVADL 397
           + +APFK+++I I  +  +  ++  E++Y +LS    +G D+  DD  E  G  F   DL
Sbjct: 474 NEIAPFKLAIIPINMYRFINVQNTAEELYTQLSSIPVIGFDILLDDRKENPGIMFTDIDL 533

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           LG P  +I+  + +++ +VE K+R TGI + + L  +I + + +  NN
Sbjct: 534 LGIPHILIISERNLNNQEVEYKYRKTGIIQKIKLNLIIQFLTEKLMNN 581


>gi|313891975|ref|ZP_07825576.1| proline--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313119618|gb|EFR42809.1| proline--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 574

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 146/226 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +A + SHK ML+ GMI + S G YS+LPL  +++  +  II EE
Sbjct: 1   MKASKLYAPTLREIPSEAVVISHKYMLKAGMIRKISSGFYSYLPLAWRSIKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +   Q A++W ++GR+D YG+EM RL DR+++     PTHEE++T +   
Sbjct: 61  MAKIESQEILMSIAQPAEIWQQTGRWDVYGEEMFRLKDRHERDYCLAPTHEELVTTLVHM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 121 DTFSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDVDEEGLDKQYHDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF + GL    + A+SG IGG  SHEF VLA+ GE  +    D
Sbjct: 181 YTNIFTKCGLNFRTVIADSGAIGGSSSHEFEVLAEAGEADIVYEVD 226



 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 90/145 (62%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG +F  GTKYS  ++ T+   +GK   + MG YGIG  R +AA IE +HD  GII
Sbjct: 404 KGIEVGQVFKLGTKYSESLNCTYLDKNGKSKPMVMGCYGIGVTRTMAASIEQNHDKDGII 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  S+AP+++ +I     +       E++Y  +SK   ++ +DD  E+ G +F  ADL+G
Sbjct: 464 WAVSIAPYEVVIIPANNKNSEVMKVAEELYRNMSKENNEIVFDDRNERAGIKFKDADLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
           +P++V +G K+  + KVEIK R TG
Sbjct: 524 YPIRVTIGKKWEENGKVEIKIRRTG 548


>gi|239944683|ref|ZP_04696620.1| prolyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239991146|ref|ZP_04711810.1| prolyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291448145|ref|ZP_06587535.1| prolyl-tRNA synthetase 1 [Streptomyces roseosporus NRRL 15998]
 gi|291351092|gb|EFE77996.1| prolyl-tRNA synthetase 1 [Streptomyces roseosporus NRRL 15998]
          Length = 567

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 146/238 (61%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI++WLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWTWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           ++IF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPNCDYAANTEAVTF 242



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 8/159 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G  GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 406 RAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVSRAVAALTEQTADDKGLC 465

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVAD 396
           WP  +AP  + ++   KA   ++  D  EK    L+  G  V  DD  G   G +F  ++
Sbjct: 466 WPREIAPADVHVVAAGKALQTELALDVSEK----LNAAGLRVLVDDRAGVSPGVKFTDSE 521

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P +++V  +  +D  +E+K R TG RE+++++E I
Sbjct: 522 LIGVP-KILVAGRRSADGVLELKDRRTGEREELTVDEAI 559


>gi|332024431|gb|EGI64629.1| Putative prolyl-tRNA synthetase, mitochondrial [Acromyrmex
           echinatior]
          Length = 437

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/397 (32%), Positives = 200/397 (50%), Gaps = 34/397 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    SHKLM+  G+I   S G+Y+ LPLG + L+ +  I+ +E    GA ++ +P L  
Sbjct: 30  DITSKSHKLMINYGIIKPLSIGMYALLPLGMRILNKLIDIVDKEMMNIGAQKILLPALTP 89

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR---SHIKSYRNLPFTFY 133
           A LW ++ RYDS   E+  L DR+ K  I  PTHEE + D+       +   + LP   Y
Sbjct: 90  AALWKKTDRYDSNKTELFTLTDRHKKEYILSPTHEEAICDLISLAGPTVPISKLLPLKLY 149

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           QI  K+RDE++PR G +RSREF+MKD Y+FD + + ++H+Y+ +  SY  IF ++G+K  
Sbjct: 150 QISSKWRDEMKPRLGFLRSREFIMKDLYTFDSSLDNARHTYDLVCESYNNIFRQIGIKYT 209

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               + G IGG +SHE+  ++D GE  +           PS +       S+N  + + T
Sbjct: 210 KSIGDVGTIGGLMSHEYHYVSDIGEDTI--------LQCPSCH------FSINQSISKTT 255

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           +     +++H              S    EVGH F   TKYS P+   F     K   + 
Sbjct: 256 SCPECKNELH--------------SYTAAEVGHTFLLDTKYSRPLEVMFFMEQNKPTPMV 301

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYAR 371
           MG +G+G  R++  V+E       + WP  +AP+ + +I  KA   ++      E+++  
Sbjct: 302 MGCFGLGLSRIITLVVEILSINDEMRWPVKLAPYTVCIIPPKAGSKEESTSAYIEQLFEI 361

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
             K   D   DD     IG +   A LLG+P  +++G
Sbjct: 362 FYKRNIDTILDDRTHYTIGKRLVFARLLGYPYIIVIG 398


>gi|313124034|ref|YP_004034293.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280597|gb|ADQ61316.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 565

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 138/221 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  + +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPSSMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDNEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTI 221



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 3/139 (2%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E      G+ WP
Sbjct: 407 IEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTRLLSAVVEQHATENGVAWP 466

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I +I +K  D++     E + A+ +K   DV +DD  E+ G +F  ADL+G P
Sbjct: 467 KEIAPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDDRNERPGVKFNDADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKH 420
           +++ VG +  +D  VE+K 
Sbjct: 525 IRITVG-RDAADGIVEVKR 542


>gi|153003352|ref|YP_001377677.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|166980097|sp|A7H7J7|SYP_ANADF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152026925|gb|ABS24693.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 575

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 140/221 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL ++ L  + AI+REE
Sbjct: 4   VRLSQAFVPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRTLAKIEAIVREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E  +P L  A++W ESGR++  G  M RL DR +     G THEE+ T I R 
Sbjct: 64  MDAIGGQEFYLPALHPAEIWKESGRWEVMGDNMFRLKDRKNGDYCLGMTHEEIFTAIARD 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +
Sbjct: 124 ELRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDKSYEDQRRA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R GL  + ++A SG +GG  S EF+V  D GE  V
Sbjct: 184 YERIFTRCGLDFVAVQAHSGAMGGSESSEFMVRTDAGEDLV 224



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 108/196 (55%), Gaps = 3/196 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           T P+A  +++   +  +  P         + +EVGHIF  GTKYS  M AT   ADGK  
Sbjct: 381 TGPHATVAELRTVRAGEGCPRCDGTLDVFKALEVGHIFKLGTKYSESMKATVLDADGKAV 440

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R++AA IE  HD  GI WP ++APF+ +++ +    ++ + A E + A
Sbjct: 441 PIVMGSYGIGVERIMAAAIELHHDELGIRWPPAIAPFQATVLTLGPEPELKKAADELVKA 500

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            LS  G +V  DD  E+ G +F  ADL+G PL++ VG K +++ KVE K R     E + 
Sbjct: 501 -LSDAGLEVLHDDREERAGVKFKDADLVGIPLRISVGKKGLAEGKVEWKLRGDKAVELVP 559

Query: 431 LEEVINYASHRFSNNR 446
           L EV   A+      R
Sbjct: 560 LAEVARRAAEHVRAGR 575


>gi|326692543|ref|ZP_08229548.1| prolyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 571

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/230 (44%), Positives = 145/230 (63%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++++LPL Q+ L+ + AIIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVAAGMFAYLPLAQRVLNKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM VP +  A+LW +SGRY++YG  + +  +R  +  I GPTHEE  T +   
Sbjct: 61  MDRIDANEMLVPEILPAELWEKSGRYETYGPALYKFKNRQARDFILGPTHEETFTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPRFG++R+REF+MKDAYSF     G   +Y+ M  +
Sbjct: 121 DIKSYKKLPLIVYQLQAKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDQAYHDMEAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  IF R+GL    +  ++G +GG  S EF   A  GE  +    D  D+
Sbjct: 181 YTNIFDRIGLSYRAIVGDAGAMGGSDSKEFSAPAAAGE-DIIAYSDASDY 229



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 1/153 (0%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RGIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+++A+ E   D  
Sbjct: 403 VFTRGIEIGHIFKLGTRYSKTMGAQILDENGRQIDMIMGSYGIGVSRLLSAIAEQMADDD 462

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++WP SVAPF + ++ +   D+       ++ A L+  G DV  DD  E+ G +FA AD
Sbjct: 463 GLVWPASVAPFDVHIVPVNLKDEDQARITSQLEAELTAQGLDVLVDDRKERAGVKFADAD 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L+G P+++ VG K   D  VE+K R +    +M
Sbjct: 523 LIGLPIRITVGKKAAEDV-VEVKVRASNTNIEM 554


>gi|33239959|ref|NP_874901.1| prolyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|81835850|sp|Q7VD75|SYP_PROMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33237485|gb|AAP99553.1| Prolyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 603

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 149/229 (65%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L++R G I + + GIY+++PL  K +  + +I++EE
Sbjct: 1   MRVSRLMLVTLRDVPAEAEIVSHQLLIRGGFIKRVTSGIYAYMPLMWKVIKKITSIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G +E  +P L  A+LW ESGR+D Y      M  L+DR  + +  GPTHEEV+T I
Sbjct: 61  LDSKGCLETLLPQLHPAELWKESGRWDGYTAGEGIMFHLSDRQGRELGLGPTHEEVITKI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF       K +Y +M
Sbjct: 121 ANEFLQSYKQLPVNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHADETNLKETYLEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y +IF R GL+++ + A+SG IGG  S EF+V A+ GE  +  S D
Sbjct: 181 NDAYEKIFKRCGLETVAVDADSGAIGGAESREFMVTAEAGEDLILLSPD 229



 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+ K ++ RGIEVGHIF  G KYS  + A+F    G +    MG YGIG  R+  A +E 
Sbjct: 422 PKQKLIAKRGIEVGHIFQLGRKYSSCLQASFTNEMGLEEPFWMGCYGIGISRLAQASVEQ 481

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++D  GIIWP  +APF++ +I     D + R+  EK+Y++L   G DV  DD  E+ G +
Sbjct: 482 NYDQSGIIWPLGIAPFEVIVIVANMKDDLQRELGEKLYSQLKDEGVDVLIDDRKERAGVK 541

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G P ++I G    +   VE+  R TGI + +  EE I       SN
Sbjct: 542 FKDADLIGIPWKIISGRDSAT-GIVELVERSTGISKSLKAEEAIKELLEEISN 593


>gi|195587264|ref|XP_002083385.1| GD13380 [Drosophila simulans]
 gi|194195394|gb|EDX08970.1| GD13380 [Drosophila simulans]
          Length = 458

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 213/425 (50%), Gaps = 47/425 (11%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYTFDVSEESARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPI 232
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +  CS     F  
Sbjct: 182 YSVVNSAYDRLFKQLEVPFVKVNAATGMMGGSVSHEYHYVSPVGEDNLLQCSS--CGFAG 239

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            SE            +      P   +SD+                 RG+EV H F  G 
Sbjct: 240 NSE-----------VVTAPARCPSCNSSDLKE--------------VRGVEVAHTFLLGD 274

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI
Sbjct: 275 KYSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLI 334

Query: 353 NIK--AHDQVCRDACEKIYARLSKVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K  + +Q   +  E     L  VG  C   ++  DD  E  IG +   A  LG PL +
Sbjct: 335 GPKQGSKEQPQAEVIEN--ELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTI 392

Query: 405 IVGSK 409
           +VG+K
Sbjct: 393 VVGAK 397


>gi|58337540|ref|YP_194125.1| prolyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227904181|ref|ZP_04021986.1| prolyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|81311450|sp|Q5FJN0|SYP_LACAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58254857|gb|AAV43094.1| prolyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227868200|gb|EEJ75621.1| prolyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 565

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/225 (46%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    +II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAESIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMMMPHLLPATLWQESGRYQKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDQQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E     +G+ WP
Sbjct: 406 IEVGHIFKLGTYYTKTMGADFLDQNGKAQPVIMGSYGIGVTRMLSAVVEQHLTDRGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF+I ++ +K + +   +  EK+  + S+   DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFEIHIVQMKMNKEDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 525 VRITIGKK-AADGIVEVKRPTDEKAVEMSIDELDKFVNQEL 564


>gi|296269038|ref|YP_003651670.1| prolyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296091825|gb|ADG87777.1| prolyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 580

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/224 (46%), Positives = 144/224 (64%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG+  L+N+  ++REE
Sbjct: 3   LRMSTLFLRTLREDPADAELPSHKLLVRAGYIRRVAPGVYSWLPLGKIVLENIARVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ + 
Sbjct: 63  MDRMGAQEVLFPALLPREYYEATGRWTEYGDTLFRLKDRKGADYLLGPTHEEMFTDMVKG 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFDL  +G K SY     +
Sbjct: 123 ELSSYKDFPVTLYQIQTKYRDEARPRAGLLRAREFVMKDSYSFDLDDDGLKRSYEAHRET 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y+RIF RLGL      A SG +GG  S EF+     GE T V C
Sbjct: 183 YIRIFDRLGLDYRICFAVSGAMGGSASEEFLAPCPNGEDTFVAC 226



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KYS        G DGK   + MGSYGIG  R+VA + E  HD  G++
Sbjct: 418 RGIEIGHIFQLGRKYSDAAGLDALGPDGKPIRITMGSYGIGVSRLVAVIAEQRHDELGLV 477

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLL 398
           WP  VAP  + ++     +Q+  +   ++   L   G  V  DD  G   G +F  A+LL
Sbjct: 478 WPREVAPADVHIVGTGKENQI--EVAVELAETLESRGLRVLVDDRPGVSPGVKFKDAELL 535

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  VIVG + +++  +E++ R +G RE++ L E  +
Sbjct: 536 GMPTIVIVG-RGLANGVLELRDRASGAREEIPLGEAAD 572


>gi|329120957|ref|ZP_08249588.1| proline--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327471119|gb|EGF16573.1| proline--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 574

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 146/226 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +A + SHK ML+ GMI + S G YS+LPL  +++  +  II EE
Sbjct: 1   MKASKLYAPTLREIPSEAVVISHKYMLKAGMIRKISSGFYSYLPLAWRSIKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +   Q A++W ++GR+D YG+EM RL DR+++     PTHEE++T +   
Sbjct: 61  MAKIESQEILMSIAQPAEIWQQTGRWDVYGEEMFRLKDRHERDYCLAPTHEELVTTLVHI 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 121 DTFSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDVDEEGLDKQYHDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF + GL    + A+SG IGG  SHEF VLA+ GE  +    D
Sbjct: 181 YTNIFTKCGLNFRTVIADSGAIGGSSSHEFEVLAEAGEADIVYEVD 226



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 90/145 (62%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG +F  GTKYS  ++ T+   +GK   + MG YGIG  R +AA IE +HD  GII
Sbjct: 404 KGIEVGQVFKLGTKYSESLNCTYLDKNGKSKPMVMGCYGIGVTRTMAASIEQNHDKDGII 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  S+AP+++ +I     +       E++Y  +SK   ++ +DD  E+ G +F  ADL+G
Sbjct: 464 WAVSIAPYEVVIIPANNKNSEIMKVAEELYRNMSKENNEIVFDDRNERAGIKFKDADLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
           +P++V +G K+  + KVEIK R TG
Sbjct: 524 YPIRVTIGKKWEENGKVEIKIRRTG 548


>gi|195492914|ref|XP_002094195.1| GE21696 [Drosophila yakuba]
 gi|194180296|gb|EDW93907.1| GE21696 [Drosophila yakuba]
          Length = 458

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/456 (31%), Positives = 229/456 (50%), Gaps = 48/456 (10%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMLLAGGQKITLPILTPTALWRKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  S    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD+  E ++ +
Sbjct: 122 TAMLASTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVCEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPI 232
           Y+ +  +Y R+F +L +  + + A++G +GG +SHE+  ++  GE  +  CS        
Sbjct: 182 YSVVNAAYDRLFKQLEVPFVKVNADTGMMGGSVSHEYHYVSAVGEDNLLQCSSCGF---- 237

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + NT+         +    + P   ++D+                 RG+EV H F  G 
Sbjct: 238 -AGNTEV--------VKTPASCPSCNSTDLKE--------------VRGVEVAHTFLLGD 274

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI
Sbjct: 275 KYSKPLGATFLNTKGKPQSLVMGCYGIGITRVIAAALEVLSSDHELHWPKLLAPYDVCLI 334

Query: 353 NIKAHDQVCRDACEKIYARLS-KVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K   +   +A E I   L   VG  C   ++  DD  E  IG +   A  LG PL ++
Sbjct: 335 GPKQGSKEQSEA-EMIENELVLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLIIV 393

Query: 406 VGSKFV-SDS-KVEIKHRLTGIREDMSLEEVINYAS 439
           VG+K +  DS K+E+ H   G   ++ L E +   +
Sbjct: 394 VGAKAIRQDSPKLEV-HTSKGETLELDLSETLKLVA 428


>gi|187924092|ref|YP_001895734.1| Proline--tRNA ligase [Burkholderia phytofirmans PsJN]
 gi|187715286|gb|ACD16510.1| Proline--tRNA ligase [Burkholderia phytofirmans PsJN]
          Length = 380

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/429 (30%), Positives = 201/429 (46%), Gaps = 63/429 (14%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           Q+N R   +    L  +  ++HQ + G+YSW+ LG +A   V +++REE  R G  E+ +
Sbjct: 15  QDNTR---LELTDLARKACLVHQDAAGLYSWMSLGLRAQRRVESVVREEMERAGFCEIQM 71

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
             LQ ADLW ++GR D+YG E++RL  R+ +    G T EE+ T + R+H     ++   
Sbjct: 72  SLLQDADLWRQTGRLDAYGDELMRLTSRSGRLFCLGATCEELATQMVRTHYNRT-DMSLG 130

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            YQ   K+RDELR R G+ R++EF+MKD YSF+ T +G++ +Y  +  +YLRIF RLGL 
Sbjct: 131 LYQFGNKYRDELRTRGGLARAKEFIMKDGYSFNATEDGARAAYEAVREAYLRIFRRLGLD 190

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +I   +++G IGG  S E                    F + SE                
Sbjct: 191 AIVKSSDNGEIGGQSSEE--------------------FHVVSE---------------- 214

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                              L E++      +E  HIF  G +YS  M       + K  +
Sbjct: 215 -------------------LGEDETDGQTSLECAHIFDLGDRYSKAMGLV----NAKGKF 251

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V+MG +G+G  R+   ++    D +G    +S   F + L  I    Q  ++A E +   
Sbjct: 252 VRMGCFGVGISRLAMLLLSRQRDERGFWGSESFNTFDVVLTVIDWERQERQEAAETLRRE 311

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  DD   Q G + A A+L+    +V+V  K ++  + E   R T  R D S 
Sbjct: 312 LQAAGLSVLMDDRLAQAGKKLADAELIACRQRVVVSGKALASGRFEWMDRRTFARRDASA 371

Query: 432 EEVINYASH 440
            E++   + 
Sbjct: 372 AEIVTLCAR 380


>gi|57242133|ref|ZP_00370073.1| prolyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57017325|gb|EAL54106.1| prolyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 568

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 140/225 (62%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+++ P  +E P+DA + SH  + R G I Q+  G+Y++LPLG+     +  II+EE
Sbjct: 1   MKFSQFYAPTFKEAPKDATLPSHIFLTRAGFIEQNGSGLYNFLPLGKMVYSKIENIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E S+     A  W ESGRY+ +GKE+LR  DR +   + GPTHEE M ++ ++
Sbjct: 61  MDKAGALETSLSFTTPASFWQESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLNVVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF    E     +  M  +
Sbjct: 121 KITSYKQLPLNLYQIGLKFRDEARPRFGLLRCREFVMKDAYSFHKDEEDLTREFENMQGT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           Y +I  RL L    + A+SG IGG  S EF+VLA  GE  +  CS
Sbjct: 181 YSKILKRLELDFRIVEADSGAIGGSGSKEFMVLAQNGEDDILLCS 225



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 1/147 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ++GIEVGHIF  GTKYS  M ATF   +GK     MG YG+G  R+VA  +E+S D
Sbjct: 401 KLTKSKGIEVGHIFKLGTKYSAAMQATFLDENGKAKPFVMGCYGMGVSRLVAVAVEASFD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            +GI+W ++++PFK+ +I     D+   +    +Y  L K+G +V  DD  E+ G +   
Sbjct: 461 ERGIVWQEALSPFKLVIILSNIKDEKALNLGISLYEDLRKLGINVLLDDRNERYGVKMND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +L+GF   +I+G K + ++++E+  R
Sbjct: 521 FELMGFNYALIIG-KSLENNELELVKR 546


>gi|322392576|ref|ZP_08066036.1| proline--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144568|gb|EFX39969.1| proline--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 617

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 141/213 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM VP L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLVPALLSADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG+ S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGEDSQEFMAI 213



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M       +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGTDVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+        I   L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEASLALTNHIEEALVNKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  ++  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AAEGIVEVKIKATG 597


>gi|312867906|ref|ZP_07728110.1| proline--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311096310|gb|EFQ54550.1| proline--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 616

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 139/216 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRYD+YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYDTYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           Y RIF R GL    +  + G +GG  S EF+ +  T
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPT 216



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 99/188 (52%), Gaps = 19/188 (10%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +TA Y    +V   ++    P+ K V   ARGIE+GHIF  GT+YS  M A     +G+ 
Sbjct: 414 FTAEYVDIREVREGEIS---PDGKGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRA 470

Query: 310 HYVQMGSYGIGAMRVVAAVIES--------SHDGK-----GIIWPDSVAPFKISLINIKA 356
             + MG YGIG  R+++AV+E         +  G+     GI +P  +APF + LI +  
Sbjct: 471 VPIIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNV 530

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+       +I   L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  V
Sbjct: 531 KDEASLALTNRIEEALVNKGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIV 589

Query: 417 EIKHRLTG 424
           E+K + TG
Sbjct: 590 EVKIKATG 597


>gi|320008235|gb|ADW03085.1| prolyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 565

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 144/238 (60%), Gaps = 10/238 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R G + + + GI+SWLPLG+K L+NV  ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLNHKLLVRAGYVRRTAAGIWSWLPLGKKVLENVTRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  SGRYD YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGGQEVLLPALLPKEAYEASGRYDEYGDLLFRLQDRKGADYLLGPTHEEIFTQVVKDM 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   +Y     +Y
Sbjct: 126 CSSYKDLPVILYQIQTKYRDEARPRAGVLRGREFQMKDSYSFDTTDEGLAEAYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +RIF RLGL    + A SG +GG  S EF+  A  GE        F+D P    N D+
Sbjct: 186 IRIFERLGLDHRVVSAVSGAMGGSASEEFLAPAPAGEDT------FVDCP----NCDY 233



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 8/165 (4%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+   S    G  GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 405 RAIEIGHIFQLGRKYADIFSLDVLGQQGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 464

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVAD 396
           WP  +AP  + ++   KA   ++  D  EK    L+  G  V  DD  G   G +F  ++
Sbjct: 465 WPREIAPADVHVVAAGKALQTELALDVSEK----LNAAGLRVLVDDRAGVSPGVKFTDSE 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           L+G P +++V  +  ++  +E+K R TG RE+++++E I   + R
Sbjct: 521 LIGVP-KILVAGRRSAEGVLELKDRRTGEREELTVDEAIARLTDR 564


>gi|296110429|ref|YP_003620810.1| prolyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295831960|gb|ADG39841.1| prolyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 571

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 144/224 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVAAGMFSYLPLAKRVLNKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A EM VP +  A+LW +SGRY +YG ++ +  +R D+  I GPTHEE  T +   
Sbjct: 61  MANIDANEMLVPEVLPAELWQKSGRYATYGPDLYKFKNRQDRDFILGPTHEETYTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDQTFHAMENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+ IF R+G+    +  ++G +GG  S EF   A  GE  +  S
Sbjct: 181 YINIFDRIGISYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYS 224



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 1/167 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+++A+ E   D  G++
Sbjct: 406 KGIEIGHIFKLGTRYSKAMGAQVLDENGRQTDMIMGSYGIGVSRLLSAIAEQKADDLGLV 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+APF + ++ +   D        ++   L   G +V  DD  E+ G +FA ADL+G
Sbjct: 466 WPASIAPFDVHIVPVNMKDDEQSRVANQLETLLMAQGLEVLVDDRKERAGVKFADADLIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            P+++ VG K   D  VE+K R +    +M + EV++  S   + ++
Sbjct: 526 LPIRITVGKKAGEDI-VEVKVRASNTNIEMRMSEVVDSVSVLLNGDK 571


>gi|261417283|ref|YP_003250966.1| prolyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373739|gb|ACX76484.1| prolyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327884|gb|ADL27085.1| proline--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 564

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/226 (44%), Positives = 148/226 (65%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKYF   L+E P DA + SH  ++R G I   S GIYS +P+G + +  +  IIREE
Sbjct: 1   MKLSKYFYVTLRETPSDATMPSHIFLMRGGYIKPVSTGIYSMMPIGYRVIQKIVNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G IE+ +P +Q+A+LW ESGRY + G+E+LR  DRN+  M+   THEE MTD+ R 
Sbjct: 61  MNKIGGIEVDLPVVQTAELWSESGRYQAIGEELLRFKDRNNHNMVLAMTHEEAMTDLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ + K+RDE R R G++R REFLMKDAYSF  + E     Y + + +
Sbjct: 121 VLNSYKQLPVMLYQFKTKYRDEARARGGLIRVREFLMKDAYSFHTSQEDLDRHYQEEYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           YLRI+ R+G++ + +++++G +GG ++HEF++    GE   + C K
Sbjct: 181 YLRIYRRVGIEPVVVQSDTGIMGGKVAHEFMLDTPNGEDYLILCKK 226



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+G+IF  GTK+S  M A F  A+       MG YGIG  R++A+V+E+SHD  G 
Sbjct: 400 TRGIEMGNIFKLGTKFSESMGAKFLTAEKTTAPAIMGCYGIGVGRLMASVVENSHDDFGP 459

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+APF++ ++ I    ++   A EK    L   G DV  DD  E+ G +F  ADL 
Sbjct: 460 IWPKSIAPFQVEIVPIGKEAELMELA-EKFEKELEAAGIDVLVDDRDERPGVKFKDADLW 518

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P+++ +G K +++ +VE K R       + +E+VI  A   F+
Sbjct: 519 GSPVRIAIGKKGLANGEVEWKFRNEKQFTMVKVEDVIAKAKEYFA 563


>gi|328885400|emb|CCA58639.1| Prolyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 566

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/238 (44%), Positives = 145/238 (60%), Gaps = 10/238 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L N+  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLSNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+++P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVTLPALLPREPYEATGRWDEYGAELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 CSSYKDLPVILYQIQNKFRDEARPRAGILRGREFLMKDSYSFDTEDEGLAQSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            R+F RLGL    + A +G +GG  S EF+  A+ GE        F D P    N DF
Sbjct: 188 QRVFERLGLDYRIVAATAGAMGGSKSEEFLAPAEAGEDT------FADCP----NCDF 235



 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 408 RAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADEKGLC 467

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +   ++  +LS  G  V  DD  G   G +F  A+L+
Sbjct: 468 WPAEVAPADVHV--VAAGKALQTELALEVSDKLSAAGLRVLVDDRAGVSPGVKFTDAELM 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P +++V  +   +  VE+K R TG RE++++EE + 
Sbjct: 526 GVP-KILVAGRRSGEGIVELKDRRTGDREELTVEEALT 562


>gi|328907631|gb|EGG27395.1| proline--tRNA ligase [Propionibacterium sp. P08]
          Length = 585

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 143/225 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + L  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVLRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  AGIGAQEVSFPALLASDPYKETGRWAEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDDAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVHSAD 228



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 2/146 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 422 SRGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP  VAPF + ++       +  D   +I + L++VG +V  DD     G +FA +++L
Sbjct: 482 VWPREVAPFDVQVLATGKGTDIL-DEATRIASELAEVGLEVLLDDRKASPGVKFADSEIL 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P  V+VG + + D  VE++ R TG
Sbjct: 541 GVPTSVVVG-RGLKDGLVEVRDRATG 565


>gi|282861434|ref|ZP_06270499.1| prolyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282564092|gb|EFB69629.1| prolyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 566

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/275 (40%), Positives = 157/275 (57%), Gaps = 17/275 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R G + + + G++SWLPLG+K L+NV+ ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLNHKLLVRAGYVRRTAAGLWSWLPLGKKVLENVSRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  SGRYD YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGGQEVLLPALLPKEPYEASGRYDEYGDLLFRLRDRKGAEYLLGPTHEEIFTQVVKDM 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 CSSYKDLPVILYQIQTKYRDEARPRAGVLRGREFQMKDSYSFDTTDEGLAESYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK----------DFMDF 230
           +RIF RLGL    + A SG +GG  S EF+  A  GE T V C             ++  
Sbjct: 186 IRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAPAGEDTFVDCPNCDYAANTEAVTYVAT 245

Query: 231 PI------PSENTDFDDIISLNSIVEQWTAPYAAT 259
           P       P E  D  D  ++ S+ +    P +AT
Sbjct: 246 PAEAPAAGPVEELDTPDTPTIESLADFLGVPASAT 280



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 8/159 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+   S    G  GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 406 RAIEIGHIFQLGRKYADIFSLDVLGQQGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 465

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVAD 396
           WP  VAP  + ++   KA   ++  D  EK    L   G  V  DD  G   G +F  ++
Sbjct: 466 WPREVAPADVHVVAAGKALQTELALDVSEK----LGAAGLRVIVDDRAGVSPGVKFTDSE 521

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P +++V  +  ++  +E+K R TG RE+++++E +
Sbjct: 522 LIGVP-KILVAGRRSAEGVLELKDRRTGEREELTVDEAL 559


>gi|94968092|ref|YP_590140.1| prolyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
 gi|122986393|sp|Q1IST4|SYP_ACIBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94550142|gb|ABF40066.1| prolyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 587

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/220 (47%), Positives = 143/220 (65%), Gaps = 1/220 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHK ++R G I Q + GIYS+L LG ++++ +  I+REE 
Sbjct: 3   RWSKLFIPTLREAPADAEVASHKFLVRAGYIRQLAAGIYSYLFLGNRSMNKIIGIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ G  E  +P L   ++W  SGR+   G  M RL DR    +  G THEE+MT+I R  
Sbjct: 63  DKIGQ-EYYLPALNPREIWEASGRWAVMGDNMFRLKDRKGAELCLGMTHEEIMTEIARKE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RPR G++R R+F+MKD+YSFD+   G   SY K   +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPRSGLLRVRQFIMKDSYSFDIDAAGLDISYQKHHDAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            RIF R GLK + + A+SG +GG  S EF+V  D GE  V
Sbjct: 182 CRIFDRCGLKYVVVHADSGAMGGSGSQEFMVYTDAGEDLV 221



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +E+GHIF  G KY+  M A     DGK+    MGSYGIG  R++ A +E S+D  G 
Sbjct: 421 GKTVEIGHIFKLGYKYTDAMGARVLDKDGKEVMPIMGSYGIGMERILTASVEQSNDDNGF 480

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +APF++ +      D+      E+I A+L   G DV  DD  E+ G +F  ADL+
Sbjct: 481 WLPAQIAPFEVVVTPTNVSDEKLAKGAEEIAAKLEAAGFDVILDDRDERPGVKFKDADLV 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P+++ VG KFV + KVE+ HR T    D ++ E++
Sbjct: 541 GIPVRINVGKKFV-EGKVEVIHRSTRESLDATIPEIV 576


>gi|32491346|ref|NP_871600.1| prolyl-tRNA synthetase [Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis]
 gi|81844435|sp|Q8D1V9|SYP_WIGBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25166553|dbj|BAC24743.1| proS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 561

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/290 (39%), Positives = 165/290 (56%), Gaps = 6/290 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+L  L+++P + E  SH+LM+R+GMI + S G+Y+WLP G + L  +  IIR E
Sbjct: 1   MRTSQYYLATLKDSPSETEGISHRLMIRSGMIRKLSSGLYAWLPTGFRVLKKIENIIRHE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q + +W  SGRY+ YG E+L+  DR  K  +  PTHEEV++ I   
Sbjct: 61  MNKIGAIEILMPIIQPSLIWKNSGRYEEYGLELLKFYDRKKKQFVLAPTHEEVISKIILK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I   +  P  FYQI  KFRDE RPR G MRS+EF+MKD+YSF L  +  + +Y+ M  +
Sbjct: 121 EINFNKVFPINFYQIYSKFRDEARPRCGTMRSKEFVMKDSYSFHLNEKSLEKTYHIMQET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN--TD 238
           Y +IF+RL L    +RA++G IGG +SHEF    +  +  +   K   D      N    
Sbjct: 181 YKKIFNRLNLDYFVIRAKTGKIGGFISHEFHAYYNKSDVLINSYKKIFD----KNNIINK 236

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           F   I + +++E        TSD+  +   D     K +    IE  H F
Sbjct: 237 FKKKIEIKNLIEINAEDILLTSDLAKKFNIDIKQIIKILLVHSIEKNHPF 286



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 87/145 (60%), Gaps = 2/145 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            IE+GHIF  G KYS P++ +    D     + MG YGIG  R+V+  IE ++D  GIIW
Sbjct: 395 SIEIGHIFQLGDKYSKPLNYSL-LKDYNKKKIFMGCYGIGISRLVSTYIEQNYDSNGIIW 453

Query: 341 PDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            + +APFK+++I I  +  +  ++  E+IY +L  +  DV + D  E+ G  F+  +L+G
Sbjct: 454 NEEIAPFKVAIIPININFSIKVKNFSEEIYYKLCNLKIDVLFYDNVERPGIMFSNIELIG 513

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
            P  +I+  K + +S +E K+R+TG
Sbjct: 514 IPHILIISDKNLKNSIIEYKNRITG 538


>gi|225166271|ref|ZP_03727968.1| Proline--tRNA ligase [Opitutaceae bacterium TAV2]
 gi|224799484|gb|EEG18016.1| Proline--tRNA ligase [Opitutaceae bacterium TAV2]
          Length = 302

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/231 (44%), Positives = 157/231 (67%), Gaps = 9/231 (3%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+YF+P L+E+P DAEIASHKL++R G++ + S G+Y+++PLG +AL  ++ I REE 
Sbjct: 3   RWSQYFIPTLKESPADAEIASHKLLVRAGLVRKLSGGLYTFMPLGLRALHKISQICREEI 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--------NDKAMIYGPTHEEV 113
           +  G IE+ +P L  A+LW +  R+ +  +E++  AD          D   + GPTHEE+
Sbjct: 63  DAGGGIELWMPHLHPAELWEQGPRWAA-AREIMFRADSAGDGKRAPRDPEFVLGPTHEEI 121

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +T + +S I SYR+LP  FYQI  KFR+E+RPR+G+MR+REF+M DAYSFD+  + +  +
Sbjct: 122 ITPLVKSEISSYRDLPKNFYQIATKFRNEIRPRYGLMRAREFVMMDAYSFDVDDDSAVKA 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  M  +Y + F RLG+++I + A++G +GG  SHEF+V A+ G+  V  S
Sbjct: 182 YFAMKTAYEKFFARLGVQAIAVEADTGVMGGSYSHEFMVPAEVGDDDVIYS 232


>gi|329936661|ref|ZP_08286368.1| prolyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329303891|gb|EGG47774.1| prolyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 564

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/272 (41%), Positives = 157/272 (57%), Gaps = 6/272 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + ++S GI+SWLPLG+K LDNV+ ++REE 
Sbjct: 6   RMSRLLVKTLRDDPADAETLSHKLLVRAGYVRRNSAGIWSWLPLGKKVLDNVSRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  S R++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASARWEEYGDLLFRLKDRKGGEYLLGPTHEEIFTLVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 VSSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAESYRLHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +IF RLGL    + A SG +GG  S EF+  A  GE        F+D P      + + 
Sbjct: 186 QKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDT------FVDCPNCDYAANTEA 239

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           +    + VE    P A   D  +    +SL E
Sbjct: 240 VTFALTPVEGAAHPAAEELDTPDTPTIESLAE 271



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 8/159 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E   D +G+ 
Sbjct: 406 RAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQHADEQGLY 465

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           WP  +AP  + ++   KA   ++  D  EK    L+  G  V  D+  G   G +F  A+
Sbjct: 466 WPKEIAPADVHVVAAGKALQTELALDVSEK----LAAAGVRVLVDERSGVSPGVKFTDAE 521

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P Q++V  +   +  VE+K R TG RE++++EE I
Sbjct: 522 LIGVP-QILVAGRRSGEGVVELKDRRTGEREELTVEEAI 559


>gi|300780959|ref|ZP_07090813.1| proline--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532666|gb|EFK53727.1| proline--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 611

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/223 (46%), Positives = 139/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG KA+ N+  I+REE 
Sbjct: 17  RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYSWLPLGLKAVRNIEEIVREEM 76

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R+  YG ++ RL DR    M+ GPTHEE+ T   +  
Sbjct: 77  NAIGAQELLFPALLPREPYEATNRWTEYGDDLFRLQDRKGTDMLLGPTHEEMFTLAVKDL 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG   SY     +Y
Sbjct: 137 YSSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDMTDEGLSESYAAHRRAY 196

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             IF R+GLK    +A SG +GG  S EF+  +D GE     S
Sbjct: 197 QAIFDRVGLKYEICQATSGAMGGSASEEFLAYSDNGEDTFVVS 239



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 3/144 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  M       +GK     MGSYGIG  R++A + E  HD KG+
Sbjct: 442 ARGIELGHIFQLGRKYTEAMDVQILDENGKRAVPTMGSYGIGVTRMLAVIAEQLHDDKGL 501

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP  +AP+++ L  +   D    +A E++       G DV  DD  +   G +F  A+L
Sbjct: 502 VWPVEIAPYQVHL-AVANKDAAAMEASERLVGEFEAAGIDVLVDDRPKVSPGVKFKDAEL 560

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           LG P  VI+G  F +D  +E++ R
Sbjct: 561 LGMPFIVILGRSF-ADGIIELRIR 583


>gi|320105902|ref|YP_004181492.1| prolyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319924423|gb|ADV81498.1| prolyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 613

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 144/225 (64%), Gaps = 1/225 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DA +ASH+++LR G + Q   G+YS+L L  ++++ + AI+REE 
Sbjct: 30  RWSKLFIPTLREAPADAVVASHQILLRAGYVRQLGAGLYSYLFLATRSINKIVAIVREEM 89

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  EM +P L  A++W ESGR+   G  M RL DR    +  G THEEVMT I RS 
Sbjct: 90  DRIGQ-EMYLPALNPAEVWQESGRWTGMGDNMFRLKDRKGADLCLGMTHEEVMTSIARSE 148

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SY+ LP  +YQIQ KFRDE RP+ G++R R+F MKD+YSFDL  EG   SY     +Y
Sbjct: 149 IRSYKQLPQIWYQIQTKFRDEPRPKSGLLRVRQFTMKDSYSFDLNEEGLDVSYKLHDEAY 208

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             IF R GL  + + A+SG +GG  S EF+V  + GE  +  S D
Sbjct: 209 RCIFTRCGLSFVAVEADSGAMGGSQSQEFMVYTEAGEDLIASSPD 253



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +E+GHIF  G KY+  M A     +GK+    MG YGIG  R++ A +E S    G+
Sbjct: 441 GKAVEIGHIFKLGYKYTESMGARVLDQNGKETMPIMGCYGIGIERILTAAMERSAASMGL 500

Query: 339 --------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                     P S+APF++ +   K  D    +A E I   L   G DV  DD  +  G 
Sbjct: 501 SDRGDIRYALPASIAPFQVIVTVTKQSDATLAEAGETIAKALDSAGFDVLLDDRDQSAGV 560

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +F  ADL+G P +V VG K V D  VE+  RLTG   + ++ EV+
Sbjct: 561 KFKDADLIGVPYRVNVGKKLV-DGLVELVDRLTGNTIECAVNEVV 604


>gi|297156817|gb|ADI06529.1| prolyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 566

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 158/275 (57%), Gaps = 17/275 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  L  L+E+P DAE ASHKL++R G + + S GI++WLP+G+K L+NV  I+REE 
Sbjct: 6   RMSRLMLKTLREDPADAETASHKLLVRAGYVRRTSAGIWTWLPIGKKVLENVARIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + R+ DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRIKDRKGADYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVILYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAESYRLHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK-DFMD---------F 230
            RIF RLGL    + A SG +GG  S EF+  A  GE T V C   D+            
Sbjct: 186 QRIFERLGLDYRIVSAISGAMGGSASEEFLAPAAAGEDTFVDCPNCDYAANTEAVTLALT 245

Query: 231 PI------PSENTDFDDIISLNSIVEQWTAPYAAT 259
           P+      P E  D  D  +++++ E    P +AT
Sbjct: 246 PVEGAEHGPVEELDTPDTPTIDTLAEHLNIPASAT 280



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E +HD  G+ 
Sbjct: 408 RAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTHDESGLC 467

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +   ++  +L   G  V  DD  G   G +F  A+L+
Sbjct: 468 WPREVAPADVHI--VAAGKALQTELALELADKLGTAGVRVMVDDRAGVSPGVKFTDAELI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  ++VG +   D  VE+K R TG RE++ ++E ++
Sbjct: 526 GVPTILVVG-RGAKDGVVELKDRRTGEREELPVDEALS 562


>gi|307179779|gb|EFN67969.1| Probable prolyl-tRNA synthetase, mitochondrial [Camponotus
           floridanus]
          Length = 422

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 142/455 (31%), Positives = 228/455 (50%), Gaps = 52/455 (11%)

Query: 4   SKYFLPI---LQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK F P+   L +     EI+ SHKLM++ G+I   + G+Y+ LPLG + L+ +  ++ +
Sbjct: 2   SKIFQPMATELSDTGDKTEISRSHKLMIKYGIIKPCNVGMYALLPLGMRVLNKLINLVDK 61

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    GA ++ +P L S  LW ++ RYDS   E+  + DR++K  I  PT+EE + D+  
Sbjct: 62  EMTNLGAEKILLPALTSTSLWKKTNRYDSNKNELFTIKDRHEKEYILSPTYEEAICDLIS 121

Query: 120 SHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S    S + LP   YQI  K+RDE++PR G +RSREF+MKD Y+FD   + ++++Y+ + 
Sbjct: 122 STGSLSTKLLPLRLYQISSKWRDEMKPRLGFLRSREFIMKDLYTFDTNLDNAQYTYDLVC 181

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENT 237
            SY  IF ++G+K   +  + G IGG +SHE+  +++ GE  +  C   +          
Sbjct: 182 ESYNNIFKQIGIKYEKVIGDVGTIGGLISHEYHYISNIGEDVILQCPSCYF--------- 232

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI--EVGHIFYFGTKYS 295
                 S+N  + + T                + P+ K    R I  E+GH F    KYS
Sbjct: 233 ------SINQTISKTT----------------NCPQCKNELQRHIAAEIGHTFLLNIKYS 270

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            P+ A +   +     V MG +G+G  R++   IE       I WP  +AP+ + +I  K
Sbjct: 271 QPLKAMYVEQNELKPVV-MGCFGLGLSRIIMLTIEILSTINEIRWPVKLAPYTVCIIPPK 329

Query: 356 AHDQVCRDACEKIYARLSKVGC----DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKF 410
           A  +   +   K   +LS++ C    D   DD     IG +F +A  LGFP  +I+G   
Sbjct: 330 AGSK--EENSSKYIEQLSEILCKRDIDTVLDDRTHLTIGKRFVLARALGFPYIIIIGKAS 387

Query: 411 V-SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             S    E+      +  ++SLE++    +H F N
Sbjct: 388 TRSIPSFEVHDINNSVTNELSLEQI----NHYFDN 418


>gi|257055068|ref|YP_003132900.1| prolyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256584940|gb|ACU96073.1| prolyl-tRNA synthetase, family II [Saccharomonospora viridis DSM
           43017]
          Length = 586

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 137/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G YSWLPLG + L NV AI+REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGGYSWLPLGLRVLRNVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQEIQFPALLPKEPYETTGRWTEYGPSLFRLVDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG   SY     +Y
Sbjct: 124 YSSYKDYPVILYQIQTKYRDEARPRAGILRGREFIMKDSYSFDLDDEGLARSYELHRNAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           LRIF RLGL  + + A SG +GG  S EF+ +A+TGE
Sbjct: 184 LRIFDRLGLDYVVVAATSGAMGGSASEEFLAVAETGE 220



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GHIF  G KY+        G D K   + MGSYGIG  RVVAA+ E  HD  
Sbjct: 417 VTARGIEIGHIFQLGRKYTDAFEVDALGPDSKPIRITMGSYGIGVSRVVAAIAEQHHDEL 476

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++WP SVAP  + ++ I   D    +  E++ A+L++ G  V  DD     G +FA A+
Sbjct: 477 GLVWPRSVAPADVHVV-IAGKDDAVTEGGERLAAQLAERGVRVLLDDRKATPGVKFADAE 535

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           L+G P  V+VG + ++   VE+K R TG R +++++  + +
Sbjct: 536 LIGVPTIVVVG-RGLAKGVVEVKDRATGERTEVAVDSAVGH 575


>gi|237785730|ref|YP_002906435.1| prolyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758642|gb|ACR17892.1| Prolyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 594

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 139/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG K L N+  I+REE 
Sbjct: 8   RMSSLFVRTLREDPADAEVPSHKLLVRAGFIRRIAPGVYSWLPLGLKVLRNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   D +  +GR+  YG  + RL DR     + GPTHEE+ T+  +  
Sbjct: 68  DGIGAQEIELPALLPRDAYEVTGRWTEYGDALFRLKDRKKGDYLLGPTHEEIFTETVKGE 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+M D+YSFD+  EG + SY K   +Y
Sbjct: 128 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMCDSYSFDMKDEGLEESYQKHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            R+F+RLGL      A SG +GG  S EF+ ++  GE     S
Sbjct: 188 QRMFNRLGLDYAICAATSGAMGGSASEEFLAVSPVGEDTFVTS 230



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  G KY+          +GK     MGSYG+G  R+VA V E  HD KG+ 
Sbjct: 431 QGIEIGHIFQLGRKYTNAFELDVLDENGKRSRPTMGSYGVGVSRLVAVVAEQYHDDKGLK 490

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP SVAPF + L+ +   D    +A   +   LS  G D+ +DD  +   G +F  ++LL
Sbjct: 491 WPVSVAPFPVHLV-VANKDAEAAEAASTLAEELSNRGLDILFDDRPKVSPGVKFKDSELL 549

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  V++G  F  + K+E++ RL    E + +++   +
Sbjct: 550 GMPYVVVLGRAF-KEGKIEVRDRLADSVETVPVDDAAEH 587


>gi|295693140|ref|YP_003601750.1| prolyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295031246|emb|CBL50725.1| Prolyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 565

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E     +G+ WP
Sbjct: 406 IEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVEQHLTERGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I ++ +K + +   +  EK+  + S+   DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFAIHIVQMKMNKEDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 525 IRITIGKK-AADGIVEVKRPTDNKATEMSIDELDKFVNQEL 564


>gi|309811510|ref|ZP_07705292.1| proline--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308434561|gb|EFP58411.1| proline--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 587

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 141/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+  HKL++R G I + + G+Y+WLPLG K L NV  I+REE 
Sbjct: 4   RMSNLFLRTLREDPADAELPGHKLLVRAGYIRRAAPGVYTWLPLGLKVLRNVETIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L   + +  + R+D YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  EAIGAQELSFPALLPREPYEATNRWDEYGPNLFRLQDRKGVDMLLGPTHEEMFTITVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +QIQ K+RDE RPR G++R REF+MKD+YSFD T +G + SY K   +Y
Sbjct: 124 FSSYKDLPTTLFQIQTKYRDEARPRAGLLRGREFIMKDSYSFDHTKQGLEESYAKHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           ++IF RLG + + + A+SG +GG  S EF+ ++  GE
Sbjct: 184 VKIFDRLGFEYVVVHADSGAMGGSASEEFLAVSRHGE 220



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  GTKY+  +       +GK   V MGSYGIG  R VAA+ E + D KG+
Sbjct: 422 ARGIEMGHIFQLGTKYAEALGLKVLDENGKLVTVTMGSYGIGVSRAVAAIAEDNLDDKGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           IWP  +APF + ++     D    +  E++ A L   G  V +DD  +   G +F  A+L
Sbjct: 482 IWPRHIAPFDVHVVAT-GKDAAVFEKAEQVVADLESAGLGVLFDDRPKVSPGVKFKDAEL 540

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G P  V++G + +SD  +E+K R +G   D+ ++EV
Sbjct: 541 IGVPTIVVLG-RGLSDGTIEVKDRRSGTSRDVGVDEV 576


>gi|227878822|ref|ZP_03996729.1| prolyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256843344|ref|ZP_05548832.1| prolyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256849837|ref|ZP_05555268.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|262046917|ref|ZP_06019877.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|293381211|ref|ZP_06627219.1| prolyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|312978246|ref|ZP_07789990.1| proline--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|227861570|gb|EEJ69182.1| prolyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256614764|gb|EEU19965.1| prolyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256713326|gb|EEU28316.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|260572899|gb|EEX29459.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|290922251|gb|EFD99245.1| prolyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|310894964|gb|EFQ44034.1| proline--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 565

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E     +G+ WP
Sbjct: 406 IEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVEQHLTERGVAWP 465

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF I ++ +K + +   +  EK+  + S+   DV +DD  E+ G +FA ADL+G P
Sbjct: 466 KEIAPFAIHIVQMKMNKEDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAP 524

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 525 IRITIGKK-AADGIVEVKRPTDDKATEMSIDELDKFVNQEL 564


>gi|259503119|ref|ZP_05746021.1| proline-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259168985|gb|EEW53480.1| proline-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 578

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 137/218 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +ENP DAE  SH +M R G I+Q S G++++LPL  + +  V  II+EE
Sbjct: 1   MKQSKLLIPTKKENPSDAEALSHIMMERAGYIYQISAGVWAYLPLAYRVIRKVKGIIQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA EM  P++  ADLW ++GRY++YG  + +  D ND+  I GPT EE MT+I R 
Sbjct: 61  MEKAGAYEMETPSMLPADLWRQTGRYEAYGDTLYKFKDHNDREYILGPTDEEAMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFR+E RPR+GV+R +EF M DAYSF    EG   +Y     +
Sbjct: 121 SVKSYKKLPLVVYQITDKFRNEPRPRYGVLRGKEFSMLDAYSFAADEEGLDEAYQAQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R GL    + A+SG IGGD S EF   A+ GE
Sbjct: 181 YHNIFDRAGLHYKVILADSGTIGGDNSQEFSAPAEIGE 218



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT YS  + A     +G+   + MG YGIG  R+++AV E + D  G++W
Sbjct: 408 GIEIGHIFKLGTGYSKKLGAQVLDKNGRLVDMIMGCYGIGVTRMLSAVAEQNADENGLVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PDS+APF + +I + A          ++  +L+  G +V  DD  E+ G +FA +DL+G 
Sbjct: 468 PDSIAPFDVHVIPVNAKKDEQMAMANELEQQLTAAGYEVLVDDRKERAGVKFADSDLIGI 527

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           PL+V VG K  +D  VE+K R TG   ++  EE++N
Sbjct: 528 PLRVTVGKK-AADGIVEVKIRKTGETLEVKQEELVN 562


>gi|161507687|ref|YP_001577641.1| prolyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048310|sp|A8YVR3|SYP_LACH4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160348676|gb|ABX27350.1| Prolyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 565

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 139/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 107/208 (51%), Gaps = 11/208 (5%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           EN + D    ++  V+  TA       V      D LP     S   IEVGHIF  GT Y
Sbjct: 368 ENANLDRDFKVDEFVDIRTANEGEPDPV------DHLPLKFTTS---IEVGHIFKLGTYY 418

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +  M A F   +GK   V MGSYGIG  R+++A +E      G+ WP  +APF I ++ +
Sbjct: 419 TKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVEQHLTEHGVAWPKEIAPFAIHIVQM 478

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K + +   +  EK+  + S+   DV +DD  E+ G +FA ADL+G P+++ VG K  +D 
Sbjct: 479 KMNKEDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAPIRITVGKK-AADG 536

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            VE+K        ++S++E+  + +   
Sbjct: 537 IVEVKRPTDDKATEISIDELDKFVNQEL 564


>gi|260101368|ref|ZP_05751605.1| proline-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260084820|gb|EEW68940.1| proline-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|328465729|gb|EGF36933.1| prolyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 565

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 139/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 11/208 (5%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           EN + D    ++  V+  TA       V      D LP     S   IEVGHIF  GT Y
Sbjct: 368 ENANLDRDFKVDEFVDIRTANEGEPDPV------DHLPLKFTTS---IEVGHIFKLGTYY 418

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +  M A F   +GK   V MGSYGIG  R+++A +E      G+ WP  +APF I ++ +
Sbjct: 419 TKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVEQHLTEHGVAWPKEIAPFAIHIVQM 478

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K + +   +  EK+  + S+   DV +DD  E+ G +FA ADL+G P+++ VG K  +D 
Sbjct: 479 KMNKEDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAPIRITVGKK-AADG 536

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            VE+K  +     +MS++E+  + +   
Sbjct: 537 IVEVKRPIDDKATEMSIDELDKFVNQEL 564


>gi|323466334|gb|ADX70021.1| Proline-tRNA ligase [Lactobacillus helveticus H10]
          Length = 565

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 139/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 11/208 (5%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           EN + D    ++  V+  TA       V      D LP     S   IEVGHIF  GT Y
Sbjct: 368 ENANLDRDFKVDEFVDIRTANEGEPDPV------DHLPLKFTTS---IEVGHIFKLGTYY 418

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +  M A F   +GK   V MGSYGIG  R+++A +E      G+ WP  +APF I ++ +
Sbjct: 419 TKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVEQHLTEHGVAWPKEIAPFAIHIVQM 478

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K + +   +  EK+  + S+   DV +DD  E+ G +FA ADL+G P+++ VG K  +D 
Sbjct: 479 KMNKEDQTELAEKLEKKFSE-KYDVLYDDRKERAGVKFADADLVGAPIRITVGKK-AADG 536

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            VE+K        +MS++E+  + +   
Sbjct: 537 IVEVKRPTDDKATEMSIDELDKFVNQEL 564


>gi|313681998|ref|YP_004059736.1| prolyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313154858|gb|ADR33536.1| prolyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 567

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 143/224 (63%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P  +E P+DA++ SH  + R G + Q + G+Y++LP+G++ L  +  II EE
Sbjct: 1   MRFSKAYIPTTKEAPKDAQLPSHIYLSRAGFVTQVAAGLYNFLPMGKRVLRKIETIINEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+ +  +  A+LW ESGR + +GKE+LR  DR D   + GPTHEE+M +I R+
Sbjct: 61  MAACDAQEVDLSFVTPAELWEESGRIEKFGKELLRFRDRKDNLFVLGPTHEEMMVNIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI+ KFRDE RPRFG+MR REF+MKD YSF  + E     ++ M  +
Sbjct: 121 RVTSYKQLPLNLYQIKTKFRDEARPRFGLMRGREFVMKDGYSFHSSNEDLDREFDAMEAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RI  RLGL+   + A+SG IGG  S E +VLA +GE T   C
Sbjct: 181 YKRILERLGLEFRIVEADSGAIGGTGSKELMVLAGSGEDTLAIC 224



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K +  +GIEVGHIF  GT YS P+ A F   +G+     MG+YG+G  R+VAAVIE  HD
Sbjct: 400 KILHTKGIEVGHIFKLGTVYSAPLKAEFLDENGRSQPFIMGTYGMGVSRLVAAVIEQHHD 459

Query: 335 GKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            KG IW  + AP+ ++++  NIK    +     E++YA L   G +   DD  E+ G + 
Sbjct: 460 EKGCIWTHATAPYLVNVMVSNIKEESHMAY--AEELYASLQSRGIETMLDDRKERFGFKM 517

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           + A+L+GFP  VIVG K + +  V+I  R T
Sbjct: 518 SDAELIGFPYTVIVG-KELENGSVQIMVRAT 547


>gi|296272187|ref|YP_003654818.1| prolyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096362|gb|ADG92312.1| prolyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 572

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 100/226 (44%), Positives = 145/226 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P  +E P DA +ASH+ ++R G I Q   G+Y++LPLG+  LD + A+++EE
Sbjct: 1   MKFSQMFMPTTKETPNDATLASHQYLIRGGFITQTGSGLYNFLPLGKIVLDKIRAVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +  +   +LW +SGR    G E+L+  DR     +  PT+EE + DI ++
Sbjct: 61  MDNTGANELLMSFVTPLELWEQSGRASVMGPELLKFKDRKGAGFVLSPTNEETVVDIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y I  KFRDE RPRFG+MR REFLMKDAYSF  T E     ++ M  +
Sbjct: 121 RITSYKDLPINLYHINTKFRDEARPRFGLMRGREFLMKDAYSFHATHEDLVREFHVMEDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y +I+ RLGL+   + A+SG IGG  S EF+VLA++GE  +   +D
Sbjct: 181 YKKIYERLGLEYRVVAADSGAIGGSGSKEFMVLANSGEDTIVVCED 226



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K +  +GIE GHIF  GTKYS  M ATF   +GK     MG YGIG  R+VAAVIE +HD
Sbjct: 405 KLIHTKGIEAGHIFQLGTKYSSAMDATFLDNNGKAQPFIMGCYGIGVSRLVAAVIEQNHD 464

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFA 393
            KG IW    APF + +I   A  +   +A +KIY  L   G     DD +  + G + +
Sbjct: 465 DKGCIWTKETAPFMVDVIVSNAKKEEELNAGKKIYNDLKIAGISTILDDRVNARFGFKMS 524

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +L+GFP  V+VG K + +  VEI +R T  +E++SL+EV+N
Sbjct: 525 DFELIGFPYAVVVGKK-LPEGIVEIVNRKTLEKEEVSLDEVVN 566


>gi|313836817|gb|EFS74531.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314929774|gb|EFS93605.1| prolyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314972203|gb|EFT16300.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 581

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 142/223 (63%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + L  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVLRRIEAICREEMAG 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWAEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDDAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           IF+RLG     ++A SGP+GG  S EF+ +A  GE     S D
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVHSAD 224



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 2/146 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 SRGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP  VAPF + ++       +  D   +I + L++VG +V  DD     G +FA +++L
Sbjct: 478 VWPREVAPFDVQVLATGKGTDIL-DEATRIASELAEVGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P  V+VG + + D  VE++ R TG
Sbjct: 537 GVPTSVVVG-RGLKDGLVEVRDRATG 561


>gi|260662303|ref|ZP_05863199.1| prolyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260553686|gb|EEX26578.1| prolyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 573

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 140/218 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P L  ADLW ESGRYD+YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 61  MDKAGAVEILLPGLLPADLWKESGRYDAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R+GL    + A+SG +GG  S EF   A  GE
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGE 218



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT YS    AT    +G+D  + MG YGIG  R+++A+ E + D  G++W
Sbjct: 408 GIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCYGIGVSRLLSAISEQNADENGLVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P +VAPF I +I + A  +      E+I A L + G +V  DD  E+ G +FA ADL+G 
Sbjct: 468 PQAVAPFDIHVIPVNAKKEDQMAMAEEITANLEEAGYEVLVDDRKERAGVKFADADLIGV 527

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           P++V VG K   +  VEIK R TG   ++  EE+
Sbjct: 528 PIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEEL 560


>gi|29829100|ref|NP_823734.1| prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|81838439|sp|Q82K46|SYP1_STRAW RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|29606206|dbj|BAC70269.1| putative prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 564

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 172/329 (52%), Gaps = 37/329 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R   + + + GI+SWLPLG+K L+NV  ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLNHKLLVRADYVRRTAAGIWSWLPLGKKVLENVARVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAMGGQEVLLPALLPKEPYEATGRWEEYGPELFRLKDRKGAEYLLGPTHEEIFTQLVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 126 CSSYKDLPVILYQIQAKYRDEARPRAGILRGREFLMKDSYSFDTADEGLAQSYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           ++IF+RLGL    + A SG +GG  S EF+  A  GE        F+D P      + + 
Sbjct: 186 IKIFNRLGLDHRIVSAVSGAMGGSASEEFLAPAPAGEDT------FVDCPACDYAANTEA 239

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +  +   VE    P     D  +    +SL E               Y G    +P SAT
Sbjct: 240 VTFVAPAVESVEHPAVEELDTPDTPTIESLAE---------------YLG----VPASAT 280

Query: 302 FKG----ADGK--------DHYVQMGSYG 318
            K     ADG+        D  V +G  G
Sbjct: 281 LKNLLVKADGEIVAVGVPGDREVDLGKLG 309



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 8/159 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D +G+ 
Sbjct: 406 RAIEIGHIFQLGRKYADAFQLDVLGKEGKPVRVTMGSYGIGVSRAVAALAEQTADEQGLC 465

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVAD 396
           WP  +AP  + ++   KA   ++  D  EK    L   G  V  DD  G   G +F  A+
Sbjct: 466 WPKEIAPADVHVVAAGKALQTELALDVAEK----LGAAGVRVLVDDRAGVSPGVKFTDAE 521

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P Q++V  +  ++  +E+K R TG RE++++EE I
Sbjct: 522 LIGVP-QILVAGRRSAEGVLELKDRKTGEREELTVEEAI 559


>gi|333024111|ref|ZP_08452175.1| putative prolyl-tRNA synthetase [Streptomyces sp. Tu6071]
 gi|332743963|gb|EGJ74404.1| putative prolyl-tRNA synthetase [Streptomyces sp. Tu6071]
          Length = 563

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 113/275 (41%), Positives = 157/275 (57%), Gaps = 17/275 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE--------------TQVFCSKD- 226
            +IF RLGL    + A SG +GG  S EF+  A  GE              T+    K  
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFADCPNCGFAANTEAVTFKGA 245

Query: 227 FMDFPI--PSENTDFDDIISLNSIVEQWTAPYAAT 259
            MD     P E  D  D  ++ S+ E    P +AT
Sbjct: 246 AMDGSAHGPVEELDTPDTPTIESLAEHLGVPASAT 280



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 405 RAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +   +I  +L+  G  V  DD  G   G +F  A+L+
Sbjct: 465 WPAEVAPADVHV--VAAGKVLQTELALEIADKLAAAGARVLVDDRAGVSPGVKFTDAELI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  VI G +  ++  VE+K R TG RE++S+EE +
Sbjct: 523 GVPKTVIAGRRS-AEGIVELKDRRTGEREELSVEEAV 558


>gi|284030961|ref|YP_003380892.1| prolyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810254|gb|ADB32093.1| prolyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 587

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 142/218 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L NV  I+REE
Sbjct: 3   LRMSSLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGMYTWLPLGLRVLRNVEKIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  +GR+  YG  + RL DR    M+ GPTHEE+ T   + 
Sbjct: 63  MDAIGAQELVFPALLPREPYEATGRWTEYGPNLFRLKDRKGADMLLGPTHEEMFTLAVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR GV+R REF+MKD+YSFD+   G + SY+    +
Sbjct: 123 LYSSYKDLPLSIYQIQNKYRDEARPRAGVLRGREFVMKDSYSFDVDQAGLQASYDLHRKA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+RIF RLG   + ++A SG +GG  S EF+ +A+ GE
Sbjct: 183 YIRIFDRLGFDYVIVQAMSGAMGGSASEEFLAVAENGE 220



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E +HD  G
Sbjct: 422 SARGIEMGHIFQLGQKYAEALDLKVLDQNGKLVTVTMGSYGVGVTRAVAAIAEGNHDELG 481

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVA 395
           +IWP  + P  + L+      +V   A E +   L   G  V +DD  E++  G +F  A
Sbjct: 482 LIWPREITPADVHLVATGKETEVFAKAAE-LATELESRGLTVLYDDR-EKVSPGVKFKDA 539

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +LLG P   +VG K ++D  +E+K R +G R D+++ EV++
Sbjct: 540 ELLGIPTIAVVG-KGLADGTIEVKDRRSGDRTDVAVTEVVD 579


>gi|318056620|ref|ZP_07975343.1| prolyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318080757|ref|ZP_07988089.1| prolyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 563

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 112/281 (39%), Positives = 155/281 (55%), Gaps = 29/281 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTEEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI--------- 232
            +IF RLGL    + A SG +GG  S EF+  A  GE        F D P          
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDT------FADCPNCGFAANTEA 239

Query: 233 --------------PSENTDFDDIISLNSIVEQWTAPYAAT 259
                         P E  D  D  ++ S+ E    P +AT
Sbjct: 240 VTFKGAEVDGSAHGPVEELDTPDTPTIESLAEHLGVPASAT 280



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 405 RAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  V+P  + +  + A   +  +   +I  +L+  G  V  DD  G   G +F  A+L+
Sbjct: 465 WPAEVSPADVHV--VAAGKVLQTELALEIADKLAAAGARVLVDDRAGVSPGVKFTDAELI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  VI G +  ++  VE+K R TG RE++S+EE +
Sbjct: 523 GVPKTVIAGRRS-AEGIVELKDRRTGEREELSVEEAV 558


>gi|184155197|ref|YP_001843537.1| prolyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|226701302|sp|B2GBM5|SYP_LACF3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183226541|dbj|BAG27057.1| prolyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
          Length = 573

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 140/218 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY++YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 61  MDKAGAVEMLLPGLLPADLWKESGRYEAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R+GL    + A+SG +GG  S EF   A  GE
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGE 218



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT YS    AT    +G+D  + MG YGIG  R+++A+ E + D  G++W
Sbjct: 408 GIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCYGIGVSRLLSAISEQNADENGLVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P +VAPF I +I + A  +      E I A L + G +V  DD  E+ G +FA ADL+G 
Sbjct: 468 PQAVAPFDIHVIPVNAKKEDQMAMAEGITANLEEAGYEVLVDDRKERAGVKFADADLIGV 527

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           P++V VG K   +  VEIK R TG   ++  EE+
Sbjct: 528 PIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEEL 560


>gi|302542146|ref|ZP_07294488.1| proline-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459764|gb|EFL22857.1| proline-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 569

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 158/275 (57%), Gaps = 17/275 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE ASHKL++R G + + S GI++WLP+G+K L+NV+ I+REE 
Sbjct: 9   RMSTLMLKTLREDPADAETASHKLLVRAGYVRRASAGIWTWLPVGKKVLENVSRIVREEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 69  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD + EG   SY     +Y
Sbjct: 129 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTSDEGLAESYRLHREAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC-------SKDFMDFPIP 233
            RIF RLGL    + A SG +GG  S EF+  A  GE T V C       + + +   +P
Sbjct: 189 QRIFERLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPNCDYAANTEAVTTAVP 248

Query: 234 S---------ENTDFDDIISLNSIVEQWTAPYAAT 259
           +         E  D  D  ++ ++ E    P +AT
Sbjct: 249 AVEGAEHGPVEELDTPDTPTIETLAEHLGVPASAT 283



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 8/160 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  RVVAA+ E + D  G+ 
Sbjct: 411 RAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRVVAALAEQTFDDSGLC 470

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVAD 396
           WP  VAP  + ++   KA   ++  D  EK    L   G  V  DD  G   G +F  A+
Sbjct: 471 WPREVAPADVHIVAAGKALQTELALDLAEK----LGTAGVRVMVDDRAGVSPGVKFTDAE 526

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P  ++VG +   D  VE+K R TG RE++ ++E ++
Sbjct: 527 LIGVPTILVVG-RGAKDGVVELKDRRTGDREELPIDEALS 565


>gi|282854645|ref|ZP_06263980.1| proline--tRNA ligase [Propionibacterium acnes J139]
 gi|282582227|gb|EFB87609.1| proline--tRNA ligase [Propionibacterium acnes J139]
          Length = 585

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 141/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ANIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 220



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 422 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 482 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 541 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576


>gi|332296932|ref|YP_004438854.1| Prolyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332180035|gb|AEE15723.1| Prolyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 615

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 145/226 (64%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +  L+E P +A IASH+LMLR G+I +   G++++LP G ++   V  IIREE
Sbjct: 1   MKTSETLISTLREVPAEAVIASHQLMLRAGLIRKLGNGLFTYLPFGLRSFRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+    +   +LW ESGR+D+ G  MLR+ +R D+ ++  PT EE +T + R 
Sbjct: 61  MDAIGALEIKPSVVVPGELWRESGRWDTMGAGMLRIKNRVDQELVVSPTAEEAVTALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  K+RDE+RPR+GVMR REF+MKDAYSF    E    +Y  M  +
Sbjct: 121 ELSSYKQLPIVAYQINTKYRDEIRPRYGVMRGREFMMKDAYSFHADAESLDKTYLAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCSK 225
           Y RIF RLGL  IP+ A+SG +GG  S EF+V +  G +T + C K
Sbjct: 181 YKRIFKRLGLSVIPVSADSGAMGGSGSEEFMVESPIGDDTLILCPK 226



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S +G E+GHIF  G KY+  M+ T+   +GK     MG YGIG  R +A++IE  HDG G
Sbjct: 445 SKKGNELGHIFKLGYKYTKSMNVTYLDENGKQQVPTMGCYGIGVDRSLASIIEEHHDGNG 504

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP S AP+++ ++ +K ++   ++  + +YA L + G +V  DD  E+ G +F   DL
Sbjct: 505 IVWPMSAAPYQVVIVPVK-YEGTMKEIADSLYAELRQAGIEVLLDDRNERPGVKFKDMDL 563

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           +G P++++VG K + +  VE+K R
Sbjct: 564 IGIPVRIVVGEKNLPN--VELKLR 585


>gi|302522218|ref|ZP_07274560.1| prolyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302431113|gb|EFL02929.1| prolyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 563

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 112/281 (39%), Positives = 155/281 (55%), Gaps = 29/281 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI--------- 232
            +IF RLGL    + A SG +GG  S EF+  A  GE        F D P          
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDT------FADCPNCGFAANTEA 239

Query: 233 --------------PSENTDFDDIISLNSIVEQWTAPYAAT 259
                         P E  D  D  ++ S+ E    P +AT
Sbjct: 240 VTFKGAAVDGSAHGPVEELDTPDTPTIESLAEHLGVPASAT 280



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 405 RAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  V+P  + +  + A   +  +   +I  +L+  G  V  DD  G   G +F  A+L+
Sbjct: 465 WPAEVSPADVHV--VAAGKVLQTELALEIADKLAAAGARVLVDDRAGVSPGVKFTDAELI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  VI G +  ++  VE+K R TG RE++S+EE +
Sbjct: 523 GVPKTVIAGRRS-AEGIVELKDRRTGEREELSVEEAV 558


>gi|149193855|ref|ZP_01870953.1| prolyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149135808|gb|EDM24286.1| prolyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 574

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 145/226 (64%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+E P+DA   SH  ++R G I Q + GIY + PLG+  LDN+  II++E
Sbjct: 1   MRFSRLFCYTLKEAPKDAVTPSHIYLIRGGYIKQVAAGIYDFAPLGKIVLDNIRDIIKKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +  +   +LW E+GR   YG E+LR+ DR     +  PT+EE + D+ RS
Sbjct: 61  MDNSGAQEVMLSFITPYELWEETGRAKKYGDELLRIEDRKGNKFVLSPTNEESIVDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF    E     +N M  +
Sbjct: 121 YVKSYKQLPINLYQINLKFRDEARPRFGLLRGREFIMKDAYSFHKDEEDLDREFNLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK 225
           Y +IF ++GL    + A+SG IGG  S EF+VLA+TGE   V CS+
Sbjct: 181 YKKIFSKMGLDFRVVEADSGAIGGSGSKEFMVLANTGEDDIVVCSE 226



 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 97/169 (57%), Gaps = 5/169 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  G  YS PM+ATF   +GK     MG YGIG  R++AA IE +HD KGI
Sbjct: 409 TKGIEVGHIFKLGDVYSKPMNATFLDENGKAKPFIMGCYGIGVSRLIAAAIEQNHDDKGI 468

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP  +APF + +I  ++K  +QV     E +Y +L      V  DD  E+ G +    +
Sbjct: 469 IWPKEIAPFVVDIIIGDVKKENQV--KFAENLYEKLKSENIKVLLDDRKERFGVKINDFE 526

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           LLGFP  VIVG K + D  VEI+ R +  + ++  +EV ++   +   +
Sbjct: 527 LLGFPYAVIVGKK-LKDGIVEIRDRRSDEKIEVKSDEVFDFLKEKLKKD 574


>gi|50842977|ref|YP_056204.1| prolyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289428734|ref|ZP_06430417.1| proline--tRNA ligase [Propionibacterium acnes J165]
 gi|295131048|ref|YP_003581711.1| proline--tRNA ligase [Propionibacterium acnes SK137]
 gi|81826419|sp|Q6A7L9|SYP_PROAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50840579|gb|AAT83246.1| prolyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289158132|gb|EFD06352.1| proline--tRNA ligase [Propionibacterium acnes J165]
 gi|291375052|gb|ADD98906.1| proline--tRNA ligase [Propionibacterium acnes SK137]
 gi|332675928|gb|AEE72744.1| proline--tRNA ligase [Propionibacterium acnes 266]
          Length = 585

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 141/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ASIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 220



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 422 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 482 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 541 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576


>gi|227514714|ref|ZP_03944763.1| proline--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|227086918|gb|EEI22230.1| proline--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 581

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 140/218 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 9   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY++YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 69  MDKAGAVEMLLPGLLPADLWKESGRYEAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 129 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R+GL    + A+SG +GG  S EF   A  GE
Sbjct: 189 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGE 226



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 94/156 (60%), Gaps = 5/156 (3%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT YS    AT    +G+D  + MG YGIG  R+++A+ E + D  G++W
Sbjct: 416 GIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCYGIGVSRLLSAISEQNADENGLVW 475

Query: 341 PDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           P +VAPF I +I  N K  DQ+     E+I A L + G +V  DD  E+ G +FA ADL+
Sbjct: 476 PQAVAPFDIHVIPVNAKKEDQMA--MAEEITANLEEAGYEVLVDDRKERAGVKFADADLI 533

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V VG K   +  VEIK R TG   ++  EE+
Sbjct: 534 GVPIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEEL 568


>gi|289426352|ref|ZP_06428095.1| proline--tRNA ligase [Propionibacterium acnes SK187]
 gi|289153080|gb|EFD01798.1| proline--tRNA ligase [Propionibacterium acnes SK187]
          Length = 585

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 141/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ASIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 220



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 422 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 482 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 541 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576


>gi|270292053|ref|ZP_06198268.1| proline--tRNA ligase [Streptococcus sp. M143]
 gi|270279581|gb|EFA25423.1| proline--tRNA ligase [Streptococcus sp. M143]
          Length = 617

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDLTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     G+ +P  +APF + LI +   D+  +   EK+ A L + G +V  DD  
Sbjct: 500 KTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTEKLEANLMEAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|306828825|ref|ZP_07462017.1| proline--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304429003|gb|EFM32091.1| proline--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 617

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     G+ +P  +APF + LI + A D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGVNFPKELAPFDVHLITVNAKDEEAQALTEKLEANLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|290957026|ref|YP_003488208.1| prolyl tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260646552|emb|CBG69649.1| prolyl tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 567

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 143/239 (59%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + G+++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGVWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T I +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEATGRWDEYGPELFRLKDRKGGDYLLGPTHEEIFTLIVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQTKFRDEARPRAGILRGREFLMKDSYSFDTEDEGLAQSYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            ++F RLGL      A +G +GG  S EF+  A  GE   F      DF   +E   F+
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAGAGE-DTFADCPACDFAANTEAITFE 245



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 8/159 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+  +     G  GK   V MGSYGIG  R VAA+ E S D KG+ 
Sbjct: 409 RAIEIGHIFQLGRKYADALKLDVLGQHGKPVRVTMGSYGIGVSRAVAALAEQSADDKGLC 468

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVAD 396
           WP  VAP  + ++   KA   ++  D  EK+ A     G  V  DD  G   G +F  ++
Sbjct: 469 WPAEVAPADVHVVAAGKALQTELALDVSEKLRA----AGLRVLVDDRAGVSPGVKFTDSE 524

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P +++V  +  ++  +E+K R TG RE+++++E I
Sbjct: 525 LIGVP-KILVAGRRSAEGVLELKDRRTGEREELTVDEAI 562


>gi|86608604|ref|YP_477366.1| prolyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|114152268|sp|Q2JMD8|SYP_SYNJB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86557146|gb|ABD02103.1| prolyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 609

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 108/230 (46%), Positives = 146/230 (63%), Gaps = 5/230 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P +AE+ SHKL+LR   I + S GIY++LPL  + L  ++ I+R+E 
Sbjct: 6   RLSQMLFVTLREDPVEAELPSHKLLLRGCFIRRLSPGIYTYLPLLWRVLQKISEIVRQEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIF 118
           N  G  E  +P LQ A++W ESGR+D Y +    M  L DR  +    GPTHEEV+T + 
Sbjct: 66  NAIGGQECLLPQLQPAEIWRESGRWDVYTQAEGIMFALKDRQGREQSLGPTHEEVITLLA 125

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  I+SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M+
Sbjct: 126 RDLIRSYRQLPQTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEESLRQTYQDMY 185

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGETQVFCSKD 226
            +Y RI  R GL+   + A++G IGG    S EF+VLA  GE ++  + D
Sbjct: 186 RAYSRILRRCGLEFRVVDADAGAIGGPSAASQEFMVLASAGEDEILYTPD 235



 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P     DV   +  D     P+    +ARGIE+GHIF  G K+SLPM ATF    G +  
Sbjct: 412 PLPEVVDVRKAQAGDRCLLNPDQILETARGIEIGHIFQLGLKFSLPMRATFTDEQGSEQP 471

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R+  A +E SHD  GIIWP ++AP+ + ++     D       EK+   
Sbjct: 472 LWMGCYGIGVSRLAQAAVEQSHDANGIIWPVAIAPYHVVVVVPNISDPEQMSVAEKLVQD 531

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +  WDD  E+ G +F  ADL+G P ++  G + +   KVE+  R +G   ++ +
Sbjct: 532 LATAGIETLWDDRDERAGVKFKDADLIGIPYRITTG-RSLKQGKVELTERASGQATEIPI 590

Query: 432 EEVINYASHRF 442
           EEV+     R 
Sbjct: 591 EEVVTTLKERI 601


>gi|331267089|ref|YP_004326719.1| prolyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683761|emb|CBZ01379.1| prolyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 617

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     G+ +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|293364306|ref|ZP_06611032.1| proline--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307702728|ref|ZP_07639680.1| prolyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291317152|gb|EFE57579.1| proline--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623844|gb|EFO02829.1| prolyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 617

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     G+ +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQTLTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+IG +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERIGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|239928618|ref|ZP_04685571.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291436943|ref|ZP_06576333.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291339838|gb|EFE66794.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 567

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/238 (44%), Positives = 144/238 (60%), Gaps = 10/238 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFDL  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQTKFRDEARPRAGILRGREFLMKDSYSFDLEDEGLARSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++F RLGL      A +G +GG  S EF+  A+ GE        F D P    N DF
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDT------FADCP----NCDF 235



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 8/159 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 408 RAIEIGHIFQLGRKYTDALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 467

Query: 340 WPDSVAPFKISLINI-KA-HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           WP  VAP  + ++   KA   ++  D  EK    L+  G  V  DD  G   G +F  ++
Sbjct: 468 WPQEVAPADVHVVAAGKALQTELALDVSEK----LAAAGVRVLVDDRPGVSPGVKFTDSE 523

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P +++V  +  ++  VE+K R TG RE++++EE I
Sbjct: 524 LIGVP-RILVAGRRAAEGVVELKDRRTGEREELTVEEAI 561


>gi|309799607|ref|ZP_07693832.1| prolyl-tRNA synthetase [Streptococcus infantis SK1302]
 gi|308116758|gb|EFO54209.1| prolyl-tRNA synthetase [Streptococcus infantis SK1302]
          Length = 617

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/214 (45%), Positives = 139/214 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKMGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y RIF R GL    +  + G +GG  S EF+ + 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAIT 214



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 19/188 (10%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +TA Y    +V   ++    P+ K V   ARGIE+GHIF  GT+YS  M A     +G+ 
Sbjct: 414 FTAEYVDIREVREGEIS---PDGKGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRA 470

Query: 310 HYVQMGSYGIGAMRVVAAVIES--------SHDGK-----GIIWPDSVAPFKISLINIKA 356
             + MG YGIG  R+++AV+E         +  G+     GI +P  +APF + LI +  
Sbjct: 471 VPIIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNV 530

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+       +I   L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  V
Sbjct: 531 KDEASLTLTNRIEEALVNKGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIV 589

Query: 417 EIKHRLTG 424
           E+K + TG
Sbjct: 590 EVKIKATG 597


>gi|319945653|ref|ZP_08019905.1| proline--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319748252|gb|EFW00494.1| proline--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 616

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+   +   KI  +L K G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEASLELTSKIEDQLVKAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P+++ VG K  +D  VE+K + +G
Sbjct: 560 ERAGVKFSDSDLIGLPIRITVGKK-AADGVVEVKIKASG 597


>gi|322374996|ref|ZP_08049510.1| proline--tRNA ligase [Streptococcus sp. C300]
 gi|321280496|gb|EFX57535.1| proline--tRNA ligase [Streptococcus sp. C300]
          Length = 617

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     G+ +P  +APF + LI +   D+  +   +K+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTDKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|320535781|ref|ZP_08035862.1| prolyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320147329|gb|EFW38864.1| prolyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 576

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 145/226 (64%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P +A IASH+L+LR GMI +   G++++LPLG ++   +  IIREE
Sbjct: 1   MKMSQMFMPTLREVPSEAVIASHQLLLRAGMIRKIGNGLFAYLPLGLRSFHKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E     +   +LW ESGR+D+ G E+LR+ +R ++ ++  PT EE  T + R 
Sbjct: 61  LDAIGCLECKPSVVIPGELWQESGRWDAMGDELLRMKNRLNQDLVVSPTAEEAFTALLRF 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+  P T YQI  K+RDE+RPR+G+MR+REF M DAYSF  T E     Y     +
Sbjct: 121 ELSSYKQFPLTLYQINTKYRDEIRPRYGLMRAREFTMMDAYSFHTTQESLDEVYEHFSQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCSK 225
           Y +IF R GL  IP+RA+SG +GG  S EF+V ++ G +T + C K
Sbjct: 181 YRKIFARCGLSVIPVRADSGAMGGSGSEEFMVESEVGDDTLILCPK 226



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S +G E+GHIF  G KY+  M+ TF   +GK  Y  MG YGIG  R +A+VIE  HD  G
Sbjct: 408 SKKGNELGHIFKLGFKYTKSMNMTFLDENGKQQYPTMGCYGIGVDRTLASVIEEHHDEDG 467

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP +VAP+   ++ IK   ++ ++A + +Y  L   G +V  DD  E+ G +F   DL
Sbjct: 468 IVWPLTVAPYHAVIVPIKYEGKM-KEAADALYTELQTAGVEVLLDDRHERPGVKFKDMDL 526

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P++++VG K +   ++E K R     + ++ +EV  +
Sbjct: 527 IGIPIRLVVGEKNL--PQIECKLRTEKESKLIAQKEVCAF 564


>gi|307331523|ref|ZP_07610636.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306882840|gb|EFN13913.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 573

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 144/238 (60%), Gaps = 10/238 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE ASHKL++R G + + + GI++WLP+G+K L+NV  I+REE 
Sbjct: 9   RLSTTMLKTLREDPADAETASHKLLVRAGYVRRAAAGIWTWLPIGKKVLENVARIVREEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+D YG  + R+ DR     + GPTHEE+ T   +  
Sbjct: 69  DAIGAQEVLLPALLPREPYEVSGRWDEYGDLLFRIKDRKGADYLLGPTHEEIFTLTVKDQ 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REFLMKD+YSFD T EG   SY     +Y
Sbjct: 129 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFLMKDSYSFDTTDEGLAESYRLHREAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            RIF RLGL    + A SG +GG  S EF+  A  GE        F+D P    N D+
Sbjct: 189 QRIFQRLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDT------FVDCP----NCDY 236



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYG+G  R VAA+ E +HD  G+ 
Sbjct: 411 RAIEIGHIFQLGRKYADAFQLDVLGQNGKPARVTMGSYGVGVSRAVAALAEQTHDESGLC 470

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +    I  +L   G  V  DD  G   G +F  A+L+
Sbjct: 471 WPREVAPADVHI--VAAGKALQTELALDIAEKLGTAGVRVMVDDRAGVSPGVKFTDAELI 528

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  ++VG +   D  VE+K R TG RE++ ++E I+
Sbjct: 529 GVPTILVVG-RGAKDGVVELKDRRTGEREELPIDEAIS 565


>gi|322388633|ref|ZP_08062233.1| proline--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140553|gb|EFX36058.1| proline--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 617

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKMGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I   L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEASLALTDRIEEALVNKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|300783993|ref|YP_003764284.1| prolyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299793507|gb|ADJ43882.1| prolyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 582

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 139/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G + + + G YSWLPLG + L  + A++REE 
Sbjct: 4   RTSSLFLRTLREDPADAEVPSHRLLVRAGYVRRVAPGGYSWLPLGLRVLRRIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAMGAQEIQFPALLPREPYETTGRWTEYGDGLFRLKDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG   SY     +Y
Sbjct: 124 YSSYRDYPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDEGLARSYQAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +++F RLGL+ + ++A SG +GG  S EF+ +A+TGE
Sbjct: 184 VKLFDRLGLEYVVVKATSGAMGGSASEEFLAVAETGE 220



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 2/161 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GHIF  G KY+        G D K   + MGSYG+G  R+V  + E +HD  
Sbjct: 417 VAARGIEIGHIFQLGRKYTDAFEVDALGPDSKPIRITMGSYGVGVSRLVGVLAEQNHDDL 476

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+IWP   +PF + ++ I   D+      EKI A L   G +V  DD     G +FA A+
Sbjct: 477 GLIWPRVASPFDVHIV-IAGKDETIAAGAEKIAAELDAAGVEVILDDRKATPGVKFADAE 535

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           L+G P  ++VG + +++  VE+K R +G RE++++E V+ +
Sbjct: 536 LVGVPTILVVG-RGLANGVVEVKDRRSGEREEIAVEAVVEH 575


>gi|315612430|ref|ZP_07887343.1| proline--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315315411|gb|EFU63450.1| proline--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 617

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     G+ +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|327446413|gb|EGE93067.1| prolyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
          Length = 581

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 141/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A +GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAASGE 216



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|68536224|ref|YP_250929.1| prolyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|260578924|ref|ZP_05846827.1| proline--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|114152185|sp|Q4JV46|SYP_CORJK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68263823|emb|CAI37311.1| proS [Corynebacterium jeikeium K411]
 gi|258602898|gb|EEW16172.1| proline--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 596

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 140/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L N+ A++REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLVRAGYIRRVAPGVYSWLPLGLRVLRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S P L   + +  +GR+  YG  + RL DR +   + GPTHEE+ T + +S 
Sbjct: 64  NAIGAQEISFPALLPREPYDTTGRWVEYGDALFRLKDRKNADYLLGPTHEEMFTSVVKSE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQ+Q K+RDE RPR G++R REF+MKD+YSF++  EG + SY     +Y
Sbjct: 124 YNSYKDFPVILYQVQTKYRDEERPRAGILRGREFIMKDSYSFNMDDEGLEESYQLHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             IF RLG+K     A SG +GG  S EF+ +A  GE
Sbjct: 184 QNIFDRLGIKYAICSATSGAMGGSASEEFLAVAANGE 220



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 3/147 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+           GK     MGSYG+G  R+V  + E   D  G+
Sbjct: 428 ARGIEIGHIFQLGRKYTEAFDVKILDESGKRSVPTMGSYGVGVSRLVGVIAEQMLDDSGL 487

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP SVAPF + ++ I   D    +A  ++   LS  G +V +DD  +   G +F  ++L
Sbjct: 488 RWPASVAPFDVHVV-IANKDAAAGEAAVELVETLSNDGLEVLFDDRPKVSPGVKFKDSEL 546

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LG PL V+VG  F +D KVE+++RLTG
Sbjct: 547 LGMPLVVVVGRGF-ADGKVELRNRLTG 572


>gi|306825925|ref|ZP_07459263.1| proline--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431857|gb|EFM34835.1| proline--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 617

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF         +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYNSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     G+ +P  +APF + LI +   D+  +   EK+ A L + G +V  DD  
Sbjct: 500 KTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMEAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|170016989|ref|YP_001727908.1| prolyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|226701307|sp|B1MY62|SYP_LEUCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169803846|gb|ACA82464.1| Prolyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 571

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/230 (43%), Positives = 142/230 (61%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   S G +S+LP+ ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVSAGTFSYLPMAKRVLNKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM VP +  A+LW +SGRY +YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDRIDANEMLVPEILPAELWQKSGRYTTYGPNLYKFKNRQDRDFILGPTHEETFTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF     G   ++  M  +
Sbjct: 121 DIKSYKKLPLVVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDTAFRNMESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  +F R+GL    +  ++G +GG  S EF   A  GE  +    D  D+
Sbjct: 181 YTNVFDRIGLNYRAIVGDAGAMGGSDSKEFSAPAAAGE-DIIAYSDTTDY 229



 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 1/153 (0%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  +GIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+++A++E   D  
Sbjct: 403 VFTKGIEIGHIFKLGTRYSKAMGAQVLDENGRQVDMIMGSYGIGVSRLLSAIVEQKADDD 462

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++WP SVAPF + ++ +   D        ++   L+K G +V  DD  E+ G +FA AD
Sbjct: 463 GLVWPASVAPFDVHIVPVNTKDDEQAGVASQLEELLTKQGLEVLIDDRKERAGVKFADAD 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L+G P+++ VG K  S+  VE+K R +    +M
Sbjct: 523 LIGLPIRITVGKK-ASEDVVEVKVRASNTNIEM 554


>gi|314923910|gb|EFS87741.1| prolyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|314966030|gb|EFT10129.1| prolyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
 gi|314981915|gb|EFT26008.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315090730|gb|EFT62706.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
 gi|315094978|gb|EFT66954.1| prolyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|315104203|gb|EFT76179.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327328087|gb|EGE69856.1| proline--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 581

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAN 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|295698550|ref|YP_003603205.1| prolyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157056|gb|ADD79501.1| prolyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 583

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 142/210 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+Y L  L +   ++EI S +LM+R+GMI + S GIY WLP G K ++ + +IIR+E
Sbjct: 1   MKTSQYLLSTLTDYQVNSEILSDRLMMRSGMIRKLSSGIYYWLPTGVKVIEKLKSIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G IE S P +Q   LW +SGR D YG+E+ R+ DR  +  I  PT+EE +  + + 
Sbjct: 61  MDSIGLIEFSSPLIQPMKLWKKSGRLDQYGEELFRINDRKSRPFILSPTNEESIIYLMKH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP + YQI+ KFRDELRP+FG++RS+EF+MKDAYSF    +  + +Y  M  +
Sbjct: 121 EIQSYKQLPISLYQIRTKFRDELRPQFGIIRSKEFIMKDAYSFHTNLQSLQKTYEMMLDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           Y RIF+R+GL    + AE+G IGG+LSHEF
Sbjct: 181 YKRIFNRIGLDFRVILAENGFIGGNLSHEF 210



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE+GHIF  G KYS  M+A F+   G+   + MG YGIG  RV+AA+IE +HD  GI+WP
Sbjct: 412 IEIGHIFQIGNKYSRAMNAFFQDERGERKLITMGCYGIGIGRVIAAIIEQNHDINGIVWP 471

Query: 342 DSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD--LL 398
           D +APF+++++ I  +   + R     +Y  L K   +V +DD   QIG    + D  L+
Sbjct: 472 DVLAPFQVAILPINMYKFNIVRKVSNDLYCDLKKNNFEVIFDD--RQIGFSKMLKDIELI 529

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P  +I+  + +  + +  ++R     E + L   +++    F  N
Sbjct: 530 GVPNILIINKENLLSNNIIYRNRSNHSEEMIHLSCTLSFLKKLFIKN 576


>gi|239982632|ref|ZP_04705156.1| prolyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291454473|ref|ZP_06593863.1| prolyl-tRNA synthetase 1 [Streptomyces albus J1074]
 gi|291357422|gb|EFE84324.1| prolyl-tRNA synthetase 1 [Streptomyces albus J1074]
          Length = 564

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/275 (40%), Positives = 156/275 (56%), Gaps = 17/275 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETISHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISHIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG + SY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLEESYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK----------DFMDF 230
            +IF RLGL    + A SG +GG  S EF+  A  GE T   C             F   
Sbjct: 186 QKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAPAGEDTFADCPNCSYAANTEAVTFALA 245

Query: 231 PI------PSENTDFDDIISLNSIVEQWTAPYAAT 259
           P+      P E  D  D  ++ ++      P +AT
Sbjct: 246 PVEGAEHGPVEVLDTPDTPTIETLAAHLGVPASAT 280



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G  GK   V MGSYGIG  R VAA+ E + DG+G+ 
Sbjct: 406 RAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVSRAVAALAEQTADGQGLC 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +   ++  +L+  G  V  DD  G   G +F  A+L+
Sbjct: 466 WPAEVAPADVHV--VAAGKALQTELALEVSEKLNAAGVRVLVDDRAGVSPGVKFTDAELI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P +++V  +  +D  VE+K R TG RE++ + E +
Sbjct: 524 GVP-KILVAGRRSADGIVELKDRRTGEREELPVAEAV 559


>gi|257867713|ref|ZP_05647366.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257874040|ref|ZP_05653693.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257876619|ref|ZP_05656272.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257801796|gb|EEV30699.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257808204|gb|EEV37026.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257810785|gb|EEV39605.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 569

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/230 (42%), Positives = 148/230 (64%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  +IREE
Sbjct: 1   MKQSKCLIPTLRETPSDAETLSHQLLVRAGYIRQVAAGIYVYLPLAQRVLEKIKRVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM++P+L   + W ESGR   YG+ + RL DRN++ ++ GPTHEE  T + ++
Sbjct: 61  LAQIDAVEMAMPSLLPYEPWKESGRASLYGESLYRLTDRNEREIVLGPTHEEPFTTLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +YN+  ++
Sbjct: 121 EITSYKRLPLSLYQIQTKYRDEQRPRFGLIRSREFIMQDGYSFHADEASLDQTYNRYEMA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  R G++   +  ++G +GG  S EF+ L+  GE ++ C     D+
Sbjct: 181 YHAILKRCGIEYRAVVGDNGLMGGRDSKEFLALSGIGE-ELICYSTESDY 229



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 1/167 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGHIF  GTKYS    AT    +G +  + MG YG+G  R+++ ++E   +  GI
Sbjct: 403 TRGIEVGHIFKLGTKYSEAQEATVVDENGDEQPIIMGCYGLGVSRLLSTIVEQYGNEFGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +APF + +I     D       E++   +++VG  V  DD  E+ G +FA ADL+
Sbjct: 463 DWPQEIAPFDVHIIQTSIEDSYQNALSEEVEEMMNQVGYQVLVDDRNERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P+++ +G K V +  VEIK + TG   ++  EEV +  +   +N 
Sbjct: 523 GCPIRLTIGKKAV-EGIVEIKIKHTGATVEVRKEEVASTLTILLANQ 568


>gi|315180910|gb|ADT87824.1| prolyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 546

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 135/201 (67%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +R GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDRAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRNEVSSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFDL  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDLDKQGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKD 226
            S EF VLA++GE  +  S +
Sbjct: 181 GSQEFHVLAESGEDLIVFSTE 201



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+ +  G DGK+  ++MG YGIG  RVVAA IE ++D  GII
Sbjct: 382 RGIEVGHIFQLGTNYSEKMNCSVLGPDGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGII 441

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA LS  G DV +DD  E+ G  F+  +L+
Sbjct: 442 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELSAAGIDVLFDDRKERPGVMFSDMELI 501

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R  G +  +++++++ +   + +
Sbjct: 502 GVPHTIVIGDRSMDEGNFEYKNRRNGEKTAIAIDQIVEHIKAQLA 546


>gi|313793980|gb|EFS42004.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801367|gb|EFS42618.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313839912|gb|EFS77626.1| prolyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314963668|gb|EFT07768.1| prolyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315079518|gb|EFT51511.1| prolyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327451998|gb|EGE98652.1| prolyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 581

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|313813363|gb|EFS51077.1| prolyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
          Length = 581

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|221231165|ref|YP_002510317.1| prolyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|225853864|ref|YP_002735376.1| prolyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|254782918|sp|B8ZKT3|SYP_STRPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782920|sp|C1CC55|SYP_STRZJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|220673625|emb|CAR68112.1| prolyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|225723520|gb|ACO19373.1| prolyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|332076711|gb|EGI87173.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
          Length = 617

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  PTL SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPTLLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|327334245|gb|EGE75959.1| proline--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 581

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|313763586|gb|EFS34950.1| prolyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313807954|gb|EFS46435.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313822153|gb|EFS59867.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313823613|gb|EFS61327.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825936|gb|EFS63650.1| prolyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|314914740|gb|EFS78571.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314919298|gb|EFS83129.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920792|gb|EFS84623.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314924644|gb|EFS88475.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314930471|gb|EFS94302.1| prolyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314954371|gb|EFS98777.1| prolyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314957443|gb|EFT01546.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314962089|gb|EFT06190.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314968504|gb|EFT12602.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
 gi|314978817|gb|EFT22911.1| prolyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314986526|gb|EFT30618.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314990885|gb|EFT34976.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315081252|gb|EFT53228.1| prolyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
 gi|315083450|gb|EFT55426.1| prolyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
 gi|315087136|gb|EFT59112.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315089308|gb|EFT61284.1| prolyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315099214|gb|EFT71190.1| prolyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
 gi|315100435|gb|EFT72411.1| prolyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315106771|gb|EFT78747.1| prolyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315109012|gb|EFT80988.1| prolyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327329728|gb|EGE71484.1| proline--tRNA ligase [Propionibacterium acnes HL096PA3]
 gi|327454965|gb|EGF01620.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327457749|gb|EGF04404.1| prolyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328752168|gb|EGF65784.1| prolyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328755200|gb|EGF68816.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328758320|gb|EGF71936.1| prolyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 581

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|313773524|gb|EFS39490.1| prolyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313831317|gb|EFS69031.1| prolyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313834927|gb|EFS72641.1| prolyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314974192|gb|EFT18288.1| prolyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976699|gb|EFT20794.1| prolyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314984337|gb|EFT28429.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|315095331|gb|EFT67307.1| prolyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|327328406|gb|EGE70168.1| proline--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327444193|gb|EGE90847.1| prolyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327444928|gb|EGE91582.1| prolyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|328760064|gb|EGF73644.1| proline--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 581

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG +   D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVGRRL-KDGLVEVRDRSTGENRQVSVAEAV 572


>gi|21224048|ref|NP_629827.1| prolyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|256784874|ref|ZP_05523305.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289768768|ref|ZP_06528146.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|15214317|sp|Q9KYR6|SYP_STRCO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7801271|emb|CAB91135.1| prolyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289698967|gb|EFD66396.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 567

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 144/238 (60%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK     L+++P DAE+ SHKL++R G + + + G++SWLPLG+K L N+  I+REE 
Sbjct: 8   RMSKLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGLWSWLPLGKKVLGNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+  YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVQLPALLPREPYEATGRWQEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVADEGLAESYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            RIF RLGL    + A +G +GG  S EF+  A+ GE   F      D+   +E   F
Sbjct: 188 QRIFERLGLDYRIVAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDYAANTEAITF 244



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E   D KG++
Sbjct: 409 RAIEIGHIFQLGRKYADALKLDVLGQNGKPARVTMGSYGIGVSRAVAALAEQHADDKGLV 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           W   VAP  + +  + A   +  +   ++  +L+  G  V  DD  G   G +F  A+L+
Sbjct: 469 WSKEVAPADVHV--VAAGKALQTELALEVSDKLAAAGVRVLVDDRAGVSPGVKFTDAELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P Q++V  +   +  VE+K R TG RE++++EE + 
Sbjct: 527 GVP-QILVAGRRSGEGVVELKDRRTGEREEVTVEEALT 563


>gi|213964749|ref|ZP_03392949.1| prolyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213952942|gb|EEB64324.1| prolyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 590

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 141/225 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG K L NV  ++REE 
Sbjct: 4   RMSQLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGVYSWLPLGLKVLRNVEKVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E++ P L   + +  + R+  YG E+ RL DR     + GPTHEE+     +  
Sbjct: 64  EGIGAQELAFPALLPREPYEATNRWTEYGPELFRLKDRKGADYLLGPTHEEMFALAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T +QIQ K+RDE RPR G++R REF+MKD+YSFD+  EG ++SY +   +Y
Sbjct: 124 FSSYKDFPTTLFQIQTKYRDEARPRAGILRGREFVMKDSYSFDMDDEGLENSYQQHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            RIF RLG+K     A SG +GG  S EF+ +++ GE     S D
Sbjct: 184 QRIFDRLGIKYEICHATSGAMGGSASEEFLAVSENGEDSFVVSTD 228



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 3/166 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+          +GK     MGSYGIG  R+VA + E   D KG+ 
Sbjct: 426 RGIEIGHIFQLGRKYTNAFEIDILDVNGKRARPTMGSYGIGVSRLVAVLAEQQLDEKGLK 485

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP + AP+K+  I +   +    +A E++   LS+ G +V +DD  +   G +F  A+LL
Sbjct: 486 WPVAAAPYKVH-IAVAGKNAEAAEAAEQLAEDLSQQGIEVLFDDRPKVSPGVKFKDAELL 544

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P  VI G  + +D KVE+++RLT   ++++ + +  + +   S 
Sbjct: 545 GMPFVVIFGRGY-ADGKVELRNRLTNETDEVAADGIAAHVAELVSK 589


>gi|313811577|gb|EFS49291.1| prolyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
          Length = 581

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG +   D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVGRRL-KDGLVEVRDRSTGENRQVSVAEAV 572


>gi|322390835|ref|ZP_08064345.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321142505|gb|EFX37973.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 616

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R G+    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGIDYKAIIGDGGAMGGKDSQEFMAV 213



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 19/188 (10%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +TA Y    +V   ++    P+ K V   ARGIE+GHIF  GT+YS  M A     +G+ 
Sbjct: 414 FTAEYVDIREVREGEIS---PDGKGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRA 470

Query: 310 HYVQMGSYGIGAMRVVAAVIES--------SHDGK-----GIIWPDSVAPFKISLINIKA 356
             + MG YGIG  R+++AV+E         +  G+     GI +P  +APF + LI +  
Sbjct: 471 VPIIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNV 530

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+      ++I   L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  V
Sbjct: 531 KDEASLALTDRIEEALVNKGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIV 589

Query: 417 EIKHRLTG 424
           E+K + TG
Sbjct: 590 EVKIKATG 597


>gi|302537254|ref|ZP_07289596.1| prolyl-tRNA synthetase [Streptomyces sp. C]
 gi|302446149|gb|EFL17965.1| prolyl-tRNA synthetase [Streptomyces sp. C]
          Length = 570

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 144/238 (60%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P DAE  SH+L++R G + + S G+++WLPLG+K LDNV+ I+REE 
Sbjct: 13  RMSRLMAKTLREDPADAETLSHRLLVRAGYVRRSSAGVWTWLPLGKKVLDNVSRIVREEM 72

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 73  DAIGAQEVLLPALLPKEPYEVSGRWSEYGDLLFRLKDRKGADYLLGPTHEEIFTLVVKDQ 132

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD++ EG   SY     +Y
Sbjct: 133 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDVSDEGLAESYRLHREAY 192

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +RIF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F
Sbjct: 193 VRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAGAGE-DTFADCPSCDYAANTEAVTF 249



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D +G+ 
Sbjct: 413 RAIEIGHIFQLGRKYADAFGLDVLGKEGKPVRVTMGSYGIGVSRAVAALAEQTADERGLR 472

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLL 398
           WP +VAP  + +  + A   V     E+  A L+  G  V  DD  G   G +   A+L+
Sbjct: 473 WPAAVAPADVHV--VAAGKAVPLALAEEAAAALAAAGRRVLLDDRPGLSPGVKLTDAELI 530

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  ++V  +  ++  VE++ R  G RE++ L E +
Sbjct: 531 GVPW-ILVAGRRSAEGVVELQDRAAGTREELPLTEAL 566


>gi|257068210|ref|YP_003154465.1| prolyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559028|gb|ACU84875.1| prolyl-tRNA synthetase, family II [Brachybacterium faecium DSM
           4810]
          Length = 594

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 140/224 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REE
Sbjct: 2   IRLSSSFIRTLREDPADAEVASHKLLVRAGYIRRSAAGVYTWLPLGLKVLRKVEQIVREE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  G  E+    LQ  + +  +GR++ YG  + RL DR     +  PTHEE+ T   + 
Sbjct: 62  QDAIGGQEVLFSALQPREPYEATGRWEDYGPNLFRLQDRKQDDYLLAPTHEEMFTLTVKD 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R+REFLMKDAYSFD+  EG   SY K  ++
Sbjct: 122 LFSSYKDLPTMLYQIQAKYRDEARPRAGLLRTREFLMKDAYSFDVDDEGLDASYEKQRLA 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R F RLGL ++  RA++G +GG  S EF+     GE     S
Sbjct: 182 YQRTFERLGLPTVICRADAGAMGGSRSEEFLHPTPVGEDTFVVS 225



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 3/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GHIF  G  Y+  +       +GK   V MGSYGIG  R +AAV E  HD KG+ 
Sbjct: 430 RGMEMGHIFQLGRTYAEALGLKVLDENGKSVVVTMGSYGIGVTRAIAAVAELCHDEKGLC 489

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++       +  +A E+I   L   G +V +DD  +   G +F  ++LL
Sbjct: 490 WPRQLAPADVHIVATGKDPAIFAEA-ERIAGALEARGLEVLYDDRPKVSPGVKFKDSELL 548

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  V+VG + ++   VE++ R  G   ++S EEV++
Sbjct: 549 GVPTSVVVG-RGLATGVVEVRDRAGGEIREVSPEEVVD 585


>gi|295836236|ref|ZP_06823169.1| proline-tRNA ligase [Streptomyces sp. SPB74]
 gi|295825921|gb|EFG64555.1| proline-tRNA ligase [Streptomyces sp. SPB74]
          Length = 563

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/281 (39%), Positives = 155/281 (55%), Gaps = 29/281 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + G++SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGVWSWLPLGKKVLDNISQIVREEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEATGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REFLMKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFLMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI--------- 232
            +IF RLGL    + A SG +GG  S EF+  A  GE        F D P          
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDT------FADCPNCGFAANTEA 239

Query: 233 --------------PSENTDFDDIISLNSIVEQWTAPYAAT 259
                         P E  D  D  ++ ++ E    P +AT
Sbjct: 240 VTFKGAAVDGSAHGPVEELDTPDTPTIETLAEHLGVPASAT 280



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 405 RAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +   ++  +L+  G  V  DD  G   G +F  A+L+
Sbjct: 465 WPAEVAPADVHV--VAAGKVLQTELALEVADKLAAAGARVLVDDRAGVSPGVKFTDAELI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  VI G +  ++  VE+K R TG RE++ +EE +
Sbjct: 523 GVPKTVIAGRR-AAEGIVELKDRRTGEREELPVEEAV 558


>gi|302558076|ref|ZP_07310418.1| prolyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302475694|gb|EFL38787.1| prolyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 566

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 144/238 (60%), Gaps = 10/238 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLMVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFDL  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQSKYRDEARPRAGILRGREFLMKDSYSFDLEDEGLAKSYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++F RLGL      A +G +GG  S EF+  A+ GE        F D P    N DF
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDT------FADCP----NCDF 235



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 408 RAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 467

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +   ++  +LS  G  V  DD  G   G +F  ++L+
Sbjct: 468 WPAEVAPADVHV--VAAGKALQTELALEVSEKLSAAGLRVLVDDRPGVSPGVKFTDSELI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P Q++V  +  ++  VE+K R TG RE++++EE + 
Sbjct: 526 GVP-QILVAGRRAAEGVVELKDRRTGEREELTIEEALT 562


>gi|325571083|ref|ZP_08146655.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156168|gb|EGC68354.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 569

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/230 (42%), Positives = 147/230 (63%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  +IREE
Sbjct: 1   MKQSKCLIPTLRETPSDAETLSHQLLVRAGYIRQVAAGIYVYLPLAQRVLEKIKRVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM++P+L   + W ESGR   YG+ + RL DRN++ ++ GPTHEE  T + ++
Sbjct: 61  LAEIDAVEMAMPSLLPYEPWKESGRASLYGESLYRLTDRNEREIVLGPTHEEPFTTLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +YN+  ++
Sbjct: 121 EITSYKRLPLSLYQIQTKYRDEQRPRFGLIRSREFIMQDGYSFHADEASLDQTYNRYEMA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  R G++   +  ++G +GG  S EF+ L+  GE ++ C     D+
Sbjct: 181 YHAILKRCGIEYRAVVGDNGLMGGRDSKEFLALSGIGE-ELICYSTESDY 229



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 1/167 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGHIF  GTKYS    AT    +G +  + MG YG+G  R+++ ++E   +  GI
Sbjct: 403 TRGIEVGHIFKLGTKYSEAQEATVVDENGDEQPIIMGCYGLGVSRLLSTIVEQYGNEFGI 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +APF + +I     D       E++   +++VG  V  DD  E+ G +FA ADL+
Sbjct: 463 DWPQEIAPFDVHIIQTSIEDSYQNALSEEVEEMMNQVGYQVLVDDRNERAGVKFADADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P+++ +G K V +  VEIK + TG   ++  EEV +  +   +N 
Sbjct: 523 GCPIRLTIGKKAV-EGIVEIKIKHTGATVEVRKEEVASTLTILLANQ 568


>gi|319441431|ref|ZP_07990587.1| prolyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 585

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 140/225 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG + L N+ AI+R E 
Sbjct: 4   RMSSFFLRTLREDPADAEVPSHKLLVRAGYIRRVTPGVYSWLPLGLRVLHNIEAIVRREM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   + +  S R+  YG  +LRL DR     + GPTHEE+ TD+ +  
Sbjct: 64  NAIGAQEIRLPALLPREPYERSNRWTEYGDSLLRLKDRKGADYLLGPTHEEMFTDLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y    V+Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFIMKDSYSFTMDDAGLDEAYQAHRVAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            RIF  LG++     A SG +GG  S EF+ ++ +GE     + D
Sbjct: 184 QRIFDSLGVEYAICAATSGAMGGSASEEFLAVSASGEDTFVRATD 228



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+          +GK     MGSYG+G  R++A + E  HD KG+ 
Sbjct: 422 RGIEIGHIFQLGRKYTEAFDVKILDENGKRSVPTMGSYGLGVSRLIAVLAEQMHDDKGLR 481

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP +VAPF + ++ I   D    +A   +   L   G +V +D+  +   G +F  A+LL
Sbjct: 482 WPTTVAPFDVHVV-IANKDAAAGEAAGSLAGELDAAGLEVIFDERPKVGPGVKFKDAELL 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G PL VIVG  F ++  VE+++RLTG
Sbjct: 541 GMPLVVIVGRGF-AEGTVELRNRLTG 565


>gi|296877243|ref|ZP_06901283.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296431763|gb|EFH17570.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 616

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R G+    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGIDFKAIIGDGGAMGGKDSQEFMAV 213



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 99/188 (52%), Gaps = 19/188 (10%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +TA Y    +V   ++    P+ K V   ARGIE+GHIF  GT+YS  M A     +G+ 
Sbjct: 414 FTAEYVDIREVREGEIS---PDGKGVLKFARGIEIGHIFKLGTRYSASMGADVLDENGRA 470

Query: 310 HYVQMGSYGIGAMRVVAAVIES--------SHDGK-----GIIWPDSVAPFKISLINIKA 356
             + MG YGIG  R+++AV+E         +  G+     GI +P  +APF + LI +  
Sbjct: 471 VPIIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNI 530

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+       +I   L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  V
Sbjct: 531 KDEASLALTNQIEESLVNKGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIV 589

Query: 417 EIKHRLTG 424
           E+K + TG
Sbjct: 590 EVKIKATG 597


>gi|327468388|gb|EGF13873.1| proline--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 616

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + +I +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHMIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|288904427|ref|YP_003429648.1| prolyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|306830460|ref|ZP_07463630.1| proline--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977424|ref|YP_004287140.1| prolyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731152|emb|CBI12700.1| prolyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|304427485|gb|EFM30587.1| proline--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177352|emb|CBZ47396.1| proS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 618

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++   AI+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 105/190 (55%), Gaps = 16/190 (8%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  +  P+ K V   ARGIE+GHIF  GT+YS  M AT    +G+   + MG YG
Sbjct: 420 DIREVKEGEISPDGKGVLKFARGIEIGHIFKLGTRYSESMGATILDQNGRAIPIVMGCYG 479

Query: 319 IGAMRVVAAVIES------SHDGK-------GIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           IG  R+++AVIE       S   K       GI +P  +APF + +I +   D+  +   
Sbjct: 480 IGVSRILSAVIEQHARLFVSKTPKGAYRFAWGINFPKELAPFDVHVITVNVKDEEAQALT 539

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+ A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  +D  VE+K + TG 
Sbjct: 540 AKVEAELVAKGYEVLVDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKATGD 598

Query: 426 REDMSLEEVI 435
             +++ E +I
Sbjct: 599 TIEVNAENLI 608


>gi|170782218|ref|YP_001710551.1| prolyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189083492|sp|B0RDZ1|SYP_CLAMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169156787|emb|CAQ01950.1| prolyl tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 590

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 138/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ASH+L++R G I + + GI++WLPLG +  + V AI+REE 
Sbjct: 4   RLSKLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGIFAWLPLGLRVKNKVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R GA E+  P L  A+ +  +GRYD YG  M RL DR    M+  PTHEE    + +  
Sbjct: 64  ERIGAQEVHFPALLPAEPYQATGRYDEYGPGMFRLEDRKRAPMVLAPTHEEFFALLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLSIYQIQDKYRDEARPRAGILRGREFTMKDAYSFDHTDAGLAVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL+ + + A++G +GG  S EF+     GE
Sbjct: 184 ERIFQRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGE 220



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 3/158 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARG E+GH+F  G KY+  +       +GK   V MGSYGIG  R +A V E++ DG+G
Sbjct: 427 TARGTEIGHVFELGRKYAEALGLKVLDENGKLVTVTMGSYGIGITRNLALVAEATQDGRG 486

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD 396
           ++WP S++PF + ++ +   D     A E++   L   G DV +DD  +   G +F  A+
Sbjct: 487 LLWPASISPFDVHVV-MTGKDPAVGTAAEELVDALDAAGLDVLFDDRPKVSPGVKFGDAE 545

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L+G P  VIVG   V D   E+  R T  R  ++L +V
Sbjct: 546 LIGVPTVVIVGRGAV-DGMAELWDRRTNERTPVALADV 582


>gi|306832697|ref|ZP_07465834.1| proline--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304425153|gb|EFM28282.1| proline--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 618

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++   AI+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 105/190 (55%), Gaps = 16/190 (8%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  +  P+ K V   ARGIE+GHIF  GT+YS  M AT    +G+   + MG YG
Sbjct: 420 DIREVKEGEISPDGKGVLKFARGIEIGHIFKLGTRYSESMGATILDQNGRAIPIIMGCYG 479

Query: 319 IGAMRVVAAVIES------SHDGKG-------IIWPDSVAPFKISLINIKAHDQVCRDAC 365
           IG  R+++AVIE       S   KG       I +P  +APF + +I +   D+  +   
Sbjct: 480 IGVSRILSAVIEQHARLFVSKTPKGAYRFAWGINFPKELAPFDVHVITVNVKDEEAQALT 539

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+ A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  +D  VE+K + TG 
Sbjct: 540 AKVEAELVAKGYEVLVDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKATGD 598

Query: 426 REDMSLEEVI 435
             +++ E +I
Sbjct: 599 TIEVNAENLI 608


>gi|148273336|ref|YP_001222897.1| prolyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166980116|sp|A5CSZ7|SYP_CLAM3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147831266|emb|CAN02222.1| proS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 590

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 138/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ASH+L++R G I + + GI++WLPLG +  + V AI+REE 
Sbjct: 4   RLSKLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGIFAWLPLGLRVKNKVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R GA E+  P L  A+ +  +GRYD YG  M RL DR    M+  PTHEE    + +  
Sbjct: 64  ERIGAQEVHFPALLPAEPYQATGRYDEYGPGMFRLEDRKRAPMVLAPTHEEFFALLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLSIYQIQDKYRDEARPRAGILRGREFTMKDAYSFDHTDAGLAVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL+ + + A++G +GG  S EF+     GE
Sbjct: 184 ERIFQRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGE 220



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RG E+GH+F  G KY+  +       +GK   V MGSYGIG  R +A V E++ DG+
Sbjct: 426 TAGRGTEIGHVFELGRKYAEALGLKVLDENGKLVTVTMGSYGIGITRNLALVAEATQDGR 485

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           G++WP S++PF + ++     D++   A E++   L   G DV +DD  +   G +F  A
Sbjct: 486 GLLWPASISPFDVHVVMTGKGDEIA-SASEELVDALDAAGLDVLFDDRPKVSPGVKFGDA 544

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +L+G P  VIVG   V D   E+  R T  R  ++L +V+ 
Sbjct: 545 ELIGVPTIVIVGRGAV-DGMAELWDRRTNERTPVALADVVG 584


>gi|312869026|ref|ZP_07729203.1| proline--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311095452|gb|EFQ53719.1| proline--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 578

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 137/218 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +ENP DAE  SH +M R G I+Q S G++++LPL  + +  ++ I+ EE
Sbjct: 1   MKQSKLLIPTKKENPSDAEALSHIMMERAGYIYQISAGVWAYLPLAYRVIRKIHQIMHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA +M  P++  ADLW ++GRY++YG  + +  D ND+  I GPT EE MT+I R 
Sbjct: 61  MEKAGAFQMETPSMLPADLWKQTGRYEAYGDTLYKFKDHNDREYILGPTDEEAMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFR+E RPR+GV+R +EF M DAYSF    EG   +Y     +
Sbjct: 121 SVKSYKKLPLVVYQITDKFRNEPRPRYGVLRGKEFSMLDAYSFAADEEGLDEAYQAQAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y  IF R GL    + A+SG IGGD S EF   A+ GE
Sbjct: 181 YRNIFDRAGLSYKVILADSGTIGGDNSQEFSAPAEIGE 218



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT YS  + A     +G+   + MG YGIG  R+++AV E + D  G++W
Sbjct: 408 GIEIGHIFKLGTGYSKKLGAQVLDKNGRLVDMIMGCYGIGVTRMLSAVAEQNADENGLVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PDS+APF + +I + A          ++  +L+  G +V  DD  E+ G +FA +DL+G 
Sbjct: 468 PDSIAPFDVHVIPVNAKKDEQMTMANELEQQLTAAGYEVLVDDRKERAGVKFADSDLIGI 527

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           PL+V +G K  +D  VE+K R TG   ++  EE++N
Sbjct: 528 PLRVTIGKK-AADGIVEVKIRKTGETLEVKQEELVN 562


>gi|332359971|gb|EGJ37785.1| proline--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 616

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPLIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALTLTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|325688976|gb|EGD30984.1| proline--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 616

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALTLTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|313819523|gb|EFS57237.1| prolyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
          Length = 581

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 139/215 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+ LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKALPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|262202081|ref|YP_003273289.1| prolyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085428|gb|ACY21396.1| prolyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 576

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/269 (39%), Positives = 158/269 (58%), Gaps = 7/269 (2%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+++P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++REE + 
Sbjct: 2   STLFLRTLRDDPADAEVPSHKLLVRGGYVRRAAPGVYTWLPLGLRVLKAIENVVREEMDA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+ +P L   D +  +GR+  YG  + RL DR    M+ GPTHEE+  ++ +    
Sbjct: 62  IGAQEILLPALLPRDPYETTGRWTEYGDALFRLKDRKGADMLLGPTHEELFANLVKGEYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFDL  +G K SY     +Y R
Sbjct: 122 SYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDAYSFDLDDDGLKVSYQAHREAYQR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFDDI 242
           +F RLG+K + + A SG +GG  S EF+  ++ GE T V C +      + +  T   + 
Sbjct: 182 LFARLGVKYVIVAATSGAMGGSASEEFLAESEVGEDTFVRCLESGYAANVEAVITPAPEP 241

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           I  + +      P A T D  +    D+L
Sbjct: 242 IPFDGL------PVATTYDTGDTPTIDTL 264



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 269 DSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ K   VSA+GIE+GHIF  G KY+        G  GK   + MGSYG+G  R+VA
Sbjct: 401 DPSPDGKGPLVSAKGIEIGHIFQLGQKYTDAFEVDVLGESGKPVRLTMGSYGVGVSRLVA 460

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP  VAPF + L+     D     A E +   L   G  V  DD   
Sbjct: 461 VIAEQCHDDKGLRWPREVAPFAVHLVIANKDDAAVTGAGE-LAEDLDAAGVSVLLDDRKA 519

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G +F  A+LLG P  V+VG  + ++  +EI+ R TG   +++++  ++
Sbjct: 520 SPGVKFKDAELLGMPTVVVVGRGY-ANGTIEIRDRFTGETTEVAVDSAVD 568


>gi|308176793|ref|YP_003916199.1| proline--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744256|emb|CBT75228.1| proline--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 595

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 142/218 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ S  FL  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG K L  V AI+REE
Sbjct: 3   LKLSTTFLRTLREDPVDAEVASHKLLVRAGYIRRAAPGIYTWLPLGLKVLARVEAIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + + ++GR+  YG  + RL DR D   +  PTHEE+ T + + 
Sbjct: 63  MNAIGAQEVHFPALLPREPYEQTGRWAEYGDGLFRLKDRKDADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +
Sbjct: 123 LYNSYKDLPVYLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFNIDDEGLDEAYMAHRGA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           YL+IF RLGL+ +P+ A++G +GG  S EF+     GE
Sbjct: 183 YLKIFERLGLEVVPVFAQAGAMGGSKSEEFLHPTAIGE 220



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 3/159 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGIE+GHIF  G KY+  ++      +GK   V MGSYGIG  R VAA+ E+ HD  G
Sbjct: 434 TERGIEMGHIFQLGRKYAEALNLKVLDQNGKQTVVTMGSYGIGVTRAVAALAEAYHDENG 493

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD 396
           + WP  VAP  I ++ +        +A EK+  +    G +V  DD  +   G +F+ A+
Sbjct: 494 LAWPKQVAPADIHIV-VTGKGPELLEAAEKLAGQFEAAGKEVILDDRPKVSAGVKFSDAE 552

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L+G P  V+VG + ++D  VE+K R TG R D+++E V+
Sbjct: 553 LIGIPTIVVVG-RGLADGVVEVKDRATGERRDVNVENVV 590


>gi|261212071|ref|ZP_05926357.1| prolyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260838679|gb|EEX65330.1| prolyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 546

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 135/201 (67%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVETIVRQEIDNAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+++  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHERPFVLSPTAEEVITALVRNEVNSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKDGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKD 226
            S EF VLA++GE  +  S +
Sbjct: 181 GSQEFHVLAESGEDLIVFSTE 201



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 107/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 382 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGII 441

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 442 WPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 501

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +I+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 502 GVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMESIIDFIQAKLA 546


>gi|325695492|gb|EGD37392.1| proline--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 616

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALTLTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + +G
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKASG 597


>gi|328944571|gb|EGG38732.1| proline--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 616

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEDAVALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|327488783|gb|EGF20582.1| proline--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 616

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+       +I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNIKDEEALALTNQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|198413603|ref|XP_002126928.1| PREDICTED: similar to prolyl-tRNA synthetase
           (mitochondrial)(putative) [Ciona intestinalis]
          Length = 435

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 219/450 (48%), Gaps = 51/450 (11%)

Query: 11  LQENP----RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +QEN     R ++  S  L+L++  I   SKGIY ++P   K+L+ + ++I E+     A
Sbjct: 19  MQENIISTFRASDSRSANLLLQSSFISPSSKGIYHFMPPLVKSLEKLTSLIDEKMKNICA 78

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK--- 123
            ++ +  L   D+W  SGR+D++GKE++   +  +      PTHEE +  +         
Sbjct: 79  QKVQMSMLSGKDIWSLSGRWDAFGKELIT-TNLGEAKHCLSPTHEEAVCKVLSQTFNKFL 137

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP   YQ   KFR+E  P+ G++R REFLM D Y+FD T + +  +YN +   Y  
Sbjct: 138 SYRHLPLRLYQTNTKFRNEPDPQRGLLRCREFLMNDLYTFDTTKKAAVETYNAVCNIYEE 197

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F  L +     +A SG IGGD SHE+ +LA  GE  +F   D                 
Sbjct: 198 FFKELNIPVTKAQAGSGLIGGDFSHEYHILAGVGEDNIFICPD----------------- 240

Query: 244 SLNSIVEQWTAPYAATSDVHN-EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                        A  S+  N EK  D+L +       GIEVGH FY G KYS     +F
Sbjct: 241 ----------TGQAWNSECTNIEKKLDTLKQ-----VDGIEVGHTFYLGKKYSKMFKTSF 285

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K    +MG YG+G  R++AA +E      G+ WP  +AP+K+ L+  K   +   
Sbjct: 286 LTPDSKPVPCEMGCYGLGVTRILAACLEVLSTESGMRWPHKIAPYKVCLVLPKTGSKEFE 345

Query: 363 D---ACEKIYARLSK---VGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD-- 413
           +   A   ++ +L     +  DV  DD  ++ IG +   A+L+G+PL ++ G    S+  
Sbjct: 346 NGTAAVNNVFDKLQNYPLLKNDVIIDDTPKRSIGWKTKHANLIGYPLVIVFGKGLNSEEQ 405

Query: 414 -SKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ++V I++    + + + L+ V+ +    F
Sbjct: 406 YAEVIIQNPDQQLTKHVPLQNVVEFIHDYF 435


>gi|195336930|ref|XP_002035086.1| GM14112 [Drosophila sechellia]
 gi|194128179|gb|EDW50222.1| GM14112 [Drosophila sechellia]
          Length = 458

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 212/425 (49%), Gaps = 47/425 (11%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPSLI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQSNMQQAGGQKITLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPI 232
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +  CS     F  
Sbjct: 182 YSVVNSAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSSVGEDNLLQCSS--CGFAG 239

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            SE            +    + P   +SD+                 RG+EV H F    
Sbjct: 240 NSE-----------VVKAPASCPSCNSSDLKE--------------VRGVEVAHTFLLED 274

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+   LI
Sbjct: 275 KYSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELHWPKLLAPYDACLI 334

Query: 353 NIK--AHDQVCRDACEKIYARLSKVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K  + +Q   +  E     L  VG  C   ++  DD  E  IG +   A  LG PL +
Sbjct: 335 GPKQGSKEQPQAEVIEN--ELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTI 392

Query: 405 IVGSK 409
           +VG+K
Sbjct: 393 VVGAK 397


>gi|162139703|ref|YP_819759.2| prolyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|148887037|sp|Q03MK9|SYP_STRTD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 620

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 140/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAV 213



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +AP+ + LI +   D+      +++ A L+  G DV  DD  
Sbjct: 500 KTPKGQYRYAWGINFPKELAPYDVHLITVNTKDEEANALTDRLEAALAAEGYDVLIDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + TG
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVKIKATG 597


>gi|332365115|gb|EGJ42878.1| proline--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 616

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEDAVALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|307708104|ref|ZP_07644572.1| prolyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307615889|gb|EFN95094.1| prolyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 617

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D   +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDDEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|289168683|ref|YP_003446952.1| prolyl-tRNA synthetase [Streptococcus mitis B6]
 gi|288908250|emb|CBJ23092.1| prolyl-tRNA synthetase [Streptococcus mitis B6]
          Length = 617

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|324989750|gb|EGC21693.1| proline--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 616

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEDAVALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|322377188|ref|ZP_08051680.1| proline--tRNA ligase [Streptococcus sp. M334]
 gi|321281901|gb|EFX58909.1| proline--tRNA ligase [Streptococcus sp. M334]
          Length = 617

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|307710999|ref|ZP_07647421.1| prolyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307616961|gb|EFN96139.1| prolyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 617

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|332359309|gb|EGJ37130.1| proline--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 616

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPLIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEAVTLTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|307704119|ref|ZP_07641047.1| prolyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307622341|gb|EFO01350.1| prolyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 617

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNIKDEEAQALTEKLEANLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|254446533|ref|ZP_05060009.1| prolyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198260841|gb|EDY85149.1| prolyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 588

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 149/225 (66%), Gaps = 7/225 (3%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK ++P L+E+P +AEI SHKL+LR G++ +   GIY++LPLG KAL+NV  +  EE NR
Sbjct: 5   SKNYIPTLKESPAEAEIDSHKLLLRAGLVRKVGSGIYAFLPLGTKALENVKRLCCEEMNR 64

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-------MIYGPTHEEVMTD 116
            GA+E+ +P +  A+ W    R+++  + M ++A   +KA        + GPTHEE++T 
Sbjct: 65  AGAMELLMPAVVPAEYWKAGPRWNAAREIMYQVASAGEKAEFPEEPAFVLGPTHEEIVTL 124

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +      SYR++  TFYQ+Q KFR+E+RPR+G+MR+REF+MKD YSFD T E +  +Y  
Sbjct: 125 LIGGEGMSYRDMGKTFYQVQTKFRNEIRPRYGLMRAREFIMKDGYSFDATDEEATATYKN 184

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           M  +Y   F R GLK I + A++G +GG  SHEF+V A+ G+  V
Sbjct: 185 MAKAYEAFFSRCGLKFISVEADTGVMGGAFSHEFMVPAEVGDDDV 229



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 2/144 (1%)

Query: 280 RGIEVGHIFYFGTKYSL--PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           R IEVGHIF  GTKYS      A +   DG      MG YGIG  R + ++IE  HD  G
Sbjct: 419 RAIEVGHIFKLGTKYSENEEFGALYVDKDGNRQPSVMGCYGIGISRTLQSIIEQKHDKNG 478

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP +VAP+++ +  +    +       K+       G  V  DD  E+ G +F  ADL
Sbjct: 479 IVWPWAVAPYQVIITVLDPGMEEADTLAIKLGEAAEAAGASVLVDDREERPGVKFKDADL 538

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           +G PL+V +G + + + +VE+K R
Sbjct: 539 IGIPLRVTIGGRGLKNGEVEMKWR 562


>gi|325686585|gb|EGD28611.1| proline--tRNA ligase [Streptococcus sanguinis SK72]
 gi|325697433|gb|EGD39319.1| proline--tRNA ligase [Streptococcus sanguinis SK160]
          Length = 616

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKTKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEKALALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|307709960|ref|ZP_07646407.1| prolyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619331|gb|EFN98460.1| prolyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 617

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|323350534|ref|ZP_08086196.1| proline--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322123216|gb|EFX94901.1| proline--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 616

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSSGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|324992477|gb|EGC24398.1| proline--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324995993|gb|EGC27904.1| proline--tRNA ligase [Streptococcus sanguinis SK678]
 gi|327460709|gb|EGF07044.1| proline--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327472430|gb|EGF17861.1| proline--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 616

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+       +I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNIKDEEALALTNQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|254382091|ref|ZP_04997453.1| prolyl-tRNA synthetase 1 [Streptomyces sp. Mg1]
 gi|194340998|gb|EDX21964.1| prolyl-tRNA synthetase 1 [Streptomyces sp. Mg1]
          Length = 565

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 143/238 (60%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P DAE  SHKL++R G + + S G+++WLPLG++ LDNV+ ++REE 
Sbjct: 8   RMSRLMAKTLREDPADAETLSHKLLVRAGYVRRSSAGVWTWLPLGKRVLDNVSRVVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEVSGRWSEYGDLLFRLKDRKGADYLLGPTHEEIFTLVVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD++ EG   SY     +Y
Sbjct: 128 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDVSDEGLAESYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            RIF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F
Sbjct: 188 RRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGE-DTFVDCPSCDYAANTEAVTF 244



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 84/157 (53%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D +G+ 
Sbjct: 408 RAIEIGHIFQLGRKYADAFGLDVLGREGKPVRVTMGSYGIGVSRAVAALAEQTADERGLC 467

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   V     E   A LS  G  V  DD  G   G +   A+L+
Sbjct: 468 WPAEVAPADVHV--VAAGKAVPLALAESAAAALSASGLRVLLDDRAGLSPGVKLTDAELI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  ++V  +   D  VE++HR TG RE+++L+E +
Sbjct: 526 GVPW-ILVAGRRSGDGVVELQHRPTGTREELTLDEAL 561


>gi|316974411|gb|EFV57903.1| proline--tRNA ligase [Trichinella spiralis]
          Length = 413

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 207/401 (51%), Gaps = 42/401 (10%)

Query: 22  SHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           S +LML  G+I +   KG++ +LP+G +AL+ +  IIR E +  GA  M++  L    +W
Sbjct: 5   SQRLMLDNGLIEYVGGKGLFHYLPVGLRALEKLCIIIRHEMDLLGAGRMALSNLCERSVW 64

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR--SHIKSYRNLPFTFYQIQLK 138
            ++GR++    E+LRL DR  K     PTHEE +T +    S I S R LP   YQI LK
Sbjct: 65  EQTGRWEEVSAELLRLKDRKGKEYCLCPTHEESVTSLISRFSPITSSR-LPLLLYQITLK 123

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDE  PRFG+ R+REF MKD YSFDL  + +  +Y+ +  +Y  IF  LG+K   + A 
Sbjct: 124 YRDEPNPRFGLARAREFFMKDMYSFDLDTKSAMKTYDAVNKAYFSIFQTLGIKVHRVEAA 183

Query: 199 SGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            G IGG+LSHEF   +  GE  +  C K             F + + +NS          
Sbjct: 184 VGSIGGNLSHEFHCESQYGEDYILMCEKC---------QKKFTEEVLVNS---------- 224

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T  V NE      P  K    R +E+ H F+ G KYS  + AT     G    +QMG +
Sbjct: 225 TTCPVCNE------PFQK---VRSLELAHTFFLGEKYSQALGATVTCNPGSPIPLQMGCF 275

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ------VCRDACEKIYAR 371
           GIG  R++AA+++     + I WP  +AP+K+ +I  K   +      +     E++ + 
Sbjct: 276 GIGISRLLAAIVDYFSSDEEIRWPLCIAPYKVCVIPPKNGSREYPATPMALHLAEQL-SS 334

Query: 372 LSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFV 411
           L+    ++ +DD   Q +G++   A   G+P  VIV +K V
Sbjct: 335 LANFNEEIVYDDRTHQTVGTRLRDAKRRGYPY-VIVANKTV 374


>gi|15900198|ref|NP_344802.1| prolyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|81855097|sp|Q97SR1|SYP_STRPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14971734|gb|AAK74442.1| prolyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
          Length = 617

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|148994606|ref|ZP_01823748.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168489739|ref|ZP_02713938.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147927136|gb|EDK78174.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183571778|gb|EDT92306.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332075929|gb|EGI86396.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 617

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|294631730|ref|ZP_06710290.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835063|gb|EFF93412.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 567

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 143/238 (60%), Gaps = 10/238 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + G++SWLPLG++ L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGVWSWLPLGRRVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEATGRWDEYGGELFRLKDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQSKYRDEARPRAGILRGREFLMKDSYSFDTADEGLAESYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            RIF RLGL      A +G +GG  S EF+  A+ GE        F D P    N DF
Sbjct: 188 QRIFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDT------FADCP----NCDF 235



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E   D  G++
Sbjct: 409 RAIEIGHIFQLGRKYTDALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQHADEHGLV 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +    +  +L+  G  V  DD  G   G +F  A+L+
Sbjct: 469 WPAEVAPADVHV--VAAGKALQTEVALDVSQKLAAAGVRVLVDDRAGVSPGVKFTDAELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P Q++V  +   +  +E+K+R TG RE++++EE + 
Sbjct: 527 GVP-QILVAGRRAGEGVLELKNRRTGEREELTVEEALT 563


>gi|168485970|ref|ZP_02710478.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183570860|gb|EDT91388.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 617

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLTPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|182683244|ref|YP_001834991.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|303259373|ref|ZP_07345350.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303261128|ref|ZP_07347077.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303263456|ref|ZP_07349379.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303265748|ref|ZP_07351646.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303267821|ref|ZP_07353623.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|226701345|sp|B2ISI9|SYP_STRPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182628578|gb|ACB89526.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|302637965|gb|EFL68451.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639307|gb|EFL69765.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302642517|gb|EFL72862.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302644656|gb|EFL74905.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302647229|gb|EFL77453.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 617

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-ATDGIVEVKIKATG 597


>gi|148988004|ref|ZP_01819467.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148996688|ref|ZP_01824406.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149001621|ref|ZP_01826594.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168484646|ref|ZP_02709598.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|168493960|ref|ZP_02718103.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|168576309|ref|ZP_02722192.1| prolyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|169833273|ref|YP_001693792.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|225860301|ref|YP_002741810.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649666|ref|ZP_04523918.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237821366|ref|ZP_04597211.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229643|ref|ZP_06963324.1| prolyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298256044|ref|ZP_06979630.1| prolyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502082|ref|YP_003724022.1| proline--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|307066942|ref|YP_003875908.1| prolyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|226701344|sp|B1I8Z1|SYP_STRPI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782922|sp|C1CPD8|SYP_STRZT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147757263|gb|EDK64302.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147760079|gb|EDK67068.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147926468|gb|EDK77541.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|168995775|gb|ACA36387.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|172042164|gb|EDT50210.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|183576158|gb|EDT96686.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183577873|gb|EDT98401.1| prolyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225727194|gb|ACO23045.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237677|gb|ADI68808.1| proline--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|301801205|emb|CBW33879.1| prolyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|306408479|gb|ADM83906.1| Prolyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|327390681|gb|EGE89021.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332077566|gb|EGI88027.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332202178|gb|EGJ16247.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
 gi|332203430|gb|EGJ17497.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
 gi|332204272|gb|EGJ18337.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 617

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|326382934|ref|ZP_08204624.1| prolyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198524|gb|EGD55708.1| prolyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 576

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 137/215 (63%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+++P DAE+ SHKL++R G I + + GIY WLPLG K    V  ++REE + 
Sbjct: 2   SNLFLRTLRDDPADAEVPSHKLLVRAGYIRRAAPGIYEWLPLGLKVFRAVENLVREEMDA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+ +P L   D +  +GR+  YG  + R+ DR    M+ GPTHEE+ T + +    
Sbjct: 62  MGAQEILLPALLPRDPYETTGRWTEYGPALFRVKDRKGADMMLGPTHEEIFTQLVKGEYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G + SY+    +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEERPRAGLLRGREFVMKDSYSFDIDDAGLQASYDAHRAAYQR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLG+K + + A SG +GG  S EF+   + GE
Sbjct: 182 IFDRLGVKYVIVAATSGAMGGSASEEFLAECEVGE 216



 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 4/158 (2%)

Query: 269 DSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ K V  +A+GIE+GHIF  G KY+   +    G +GK     MGSYG+G  R+VA
Sbjct: 401 DPSPDGKGVLETAKGIEIGHIFQLGRKYTDAFAFDVLGENGKPVRPTMGSYGLGVSRMVA 460

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP  VAPF + L+ I   D+      +++ A L   G  V +DD   
Sbjct: 461 VLAEQLHDEKGLRWPREVAPFDVHLV-IANKDEAAVAGAQRLAADLDAAGVSVLFDDRKA 519

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             G +F  A+LLG P+ V+VG  + +D  +EI+ RL+G
Sbjct: 520 SPGVKFKDAELLGMPVVVVVGRGW-ADGTIEIRDRLSG 556


>gi|168492219|ref|ZP_02716362.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183573637|gb|EDT94165.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 617

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|149011134|ref|ZP_01832439.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|147764770|gb|EDK71700.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
          Length = 617

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-ATDGIVEVKIKATG 597


>gi|319940262|ref|ZP_08014614.1| prolyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319810564|gb|EFW06900.1| prolyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 619

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/214 (45%), Positives = 137/214 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++ V  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQISAGVYSYLPLANRVIEKVKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRYD+YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYDTYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R  +    +  + G +GG  S EF+ + 
Sbjct: 181 YENIFTRSEVDFKGIIGDGGAMGGKDSQEFMAIT 214



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+AT    +G+   V MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSESMNATVLDENGRAVPVVMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   D+      E++ A L K G +V  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLIPVNVKDEEALALTEQLEAELLKAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V +G K  +D  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTIGKK-AADRIVEVKIKATG 597


>gi|290579880|ref|YP_003484272.1| putative prolyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996779|dbj|BAH87380.1| putative prolyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 616

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 139/214 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DA++ SH LM+R G + Q S GIYS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSNMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYSYLPLAHRVIEKIKEIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T++ R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTNLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHADYDSLDATYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R+GL    +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRVGLDFKAIIGDGGAMGGKDSQEFMAVT 214



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 106/198 (53%), Gaps = 16/198 (8%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           AA  D+      ++ P+ K V   ARGIE+GHIF  GT+YS  M +     +G+   + M
Sbjct: 416 AAYVDIREVCEGEASPDGKGVLKFARGIEIGHIFKLGTRYSESMGSNILDENGRSIPIIM 475

Query: 315 GSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVC 361
           GSYGIG  R+++AVIE +                 G+ +P ++APF + LI +   D+V 
Sbjct: 476 GSYGIGVSRILSAVIEQNARIFVNKTPKGAYRFSWGVNFPKTLAPFDVHLITVNVKDEVS 535

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +    K+   L      V  D+  E+IGS+F+ +DL+G P++V VG K  SD  VE+K +
Sbjct: 536 QQLTAKVEESLVDAHYSVLTDNRNERIGSKFSDSDLIGLPIRVTVGKK-ASDGIVEVKIK 594

Query: 422 LTGIREDMSLEEVINYAS 439
            TG   +++ E ++   S
Sbjct: 595 STGDTIEVNAENLLETLS 612


>gi|148983669|ref|ZP_01816988.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923816|gb|EDK74928.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301799407|emb|CBW31944.1| prolyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 617

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|327462766|gb|EGF09088.1| proline--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 616

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|194397930|ref|YP_002036964.1| prolyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|307126481|ref|YP_003878512.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|226701343|sp|B5E6T8|SYP_STRP4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194357597|gb|ACF56045.1| prolyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|306483543|gb|ADM90412.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
          Length = 617

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|149006018|ref|ZP_01829747.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147762374|gb|EDK69335.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
          Length = 617

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|301793532|emb|CBW35907.1| prolyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 617

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALIEKLEASLMGDGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|313816766|gb|EFS54480.1| prolyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
          Length = 581

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 138/215 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFVRTLREAPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+ LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKALPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|225856022|ref|YP_002737533.1| prolyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254782921|sp|C1CIE5|SYP_STRZP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225724634|gb|ACO20486.1| prolyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 617

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKIPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|225858114|ref|YP_002739624.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|254782917|sp|C1CB39|SYP_STRP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225721841|gb|ACO17695.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 70585]
          Length = 617

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|303255041|ref|ZP_07341117.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302597871|gb|EFL64941.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS455]
          Length = 617

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +AP  + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPLDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|125718857|ref|YP_001035990.1| prolyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|152112958|sp|A3CQI5|SYP_STRSV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125498774|gb|ABN45440.1| Prolyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 616

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|15902287|ref|NP_357837.1| prolyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116515963|ref|YP_815764.1| prolyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|81845175|sp|Q8DRB0|SYP_STRR6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122279350|sp|Q04MI4|SYP_STRP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15457791|gb|AAK99047.1| Prolyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116076539|gb|ABJ54259.1| prolyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 617

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|326333619|ref|ZP_08199856.1| proline--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325948525|gb|EGD40628.1| proline--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 582

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 142/215 (66%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  F+  L+E+P DAE+ASHKL++R G I + + GIYSWLPLG + L  V  IIREE   
Sbjct: 2   STLFVRTLREDPADAEVASHKLLVRAGYIRRAAPGIYSWLPLGLRVLGKVEQIIREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G+ E+  P L   + +  +GR+  YG  + RL DR +   + GPTHEE+ T + +    
Sbjct: 62  IGSQEVHFPALLPREPYEATGRWTEYGDGIFRLKDRKEADYLLGPTHEEMFTLLVKDLYG 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG + +Y     +Y+R
Sbjct: 122 SYKDLPLSIYQIQTKYRDEARPRAGLLRGREFIMKDSYSFDVTDEGLEAAYQAHRDAYVR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +F RLG + + ++A SG +GG  S EF+ +++ GE
Sbjct: 182 VFDRLGFEYVIVKATSGAMGGSASEEFLAVSEAGE 216



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GH+F  G KY+  +       +GK   V MGSYGIG  R VAA+ E + D  G+
Sbjct: 418 ARGIEMGHVFQLGRKYADALGLQVLDENGKLVTVTMGSYGIGVTRAVAAIAEGTLDEIGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP +VAP+ + L+     D    +A   +   L   G DV +DD  +   G +F  A+L
Sbjct: 478 AWPRNVAPYDVHLVAT-GKDSAVFEAAATLAEELEAAGIDVLYDDRPKVSPGVKFKDAEL 536

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G P  V VG   V + K+E+K R +G + +++L + + + + 
Sbjct: 537 IGVPTIVTVGKGLV-EGKIEVKDRKSGEKTEVALADAVAHLTE 578


>gi|55820298|ref|YP_138740.1| prolyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822188|ref|YP_140629.1| prolyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|81820361|sp|Q5M1N3|SYP_STRT1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81820523|sp|Q5M674|SYP_STRT2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|55736283|gb|AAV59925.1| prolyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738173|gb|AAV61814.1| prolyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 620

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTVLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAV 213



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +AP+ + LI +   D+      +++ A L+  G DV  DD  
Sbjct: 500 KTPKGQYRYAWGINFPKELAPYDVHLITVNTKDEEANALTDRLEAALAAEGYDVLIDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + TG
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVKIKATG 597


>gi|86146905|ref|ZP_01065224.1| prolyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85835357|gb|EAQ53496.1| prolyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 546

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/201 (48%), Positives = 134/201 (66%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GA+E+ +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAVEILMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ I SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRNEISSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  EG + SY  M  +Y + F R+GL+  P+ A+SG IGG 
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDAYCKAFDRMGLEYRPVLADSGAIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKD 226
            S EF VLA++GE  +  S +
Sbjct: 181 GSQEFHVLAESGEDLIAFSSE 201



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G  YS  M+    G DGK   ++MG YGIG  RVVA+ IE +HD  GI 
Sbjct: 382 RGIEVGHIFQLGNTYSKAMNCNVLGPDGKSVILEMGCYGIGVSRVVASAIEQNHDKFGIT 441

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+
Sbjct: 442 WPDALAPFQVAIVPMNMHKSERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELV 501

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R TG +E ++++ VI + + + +
Sbjct: 502 GIPHTIVIGDRSMDEGNFEYKNRRTGDKEAIAMDTVIEHLTAQLA 546


>gi|171778813|ref|ZP_02919875.1| hypothetical protein STRINF_00734 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282459|gb|EDT47883.1| hypothetical protein STRINF_00734 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 618

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------S 332
           ARGIE+GHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE       S
Sbjct: 440 ARGIEIGHIFKLGTRYSESMGATILDQNGRAIPIVMGCYGIGVSRILSAVIEQHARLFVS 499

Query: 333 HDGK-------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              K       GI +P  +APF + +I +   D+  +    K+ A L   G +V  D+  
Sbjct: 500 KTPKGAYRFAWGINFPKELAPFDVHVITVNVKDEEAQALTAKVEAELVAKGYEVLVDNRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  +D  VE+K + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKATGDTIEVNAENLI 608


>gi|322373816|ref|ZP_08048351.1| proline--tRNA ligase [Streptococcus sp. C150]
 gi|321277188|gb|EFX54258.1| proline--tRNA ligase [Streptococcus sp. C150]
          Length = 620

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++   AI+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAV 213



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +AP+ + LI +   D+      E++ A L   G DV  DD  
Sbjct: 500 KTPKGQYRYAWGINFPKDLAPYDVHLITVNTKDEEATALTERLEAALMAEGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + TG
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVKIKATG 597


>gi|312863998|ref|ZP_07724234.1| proline--tRNA ligase [Streptococcus vestibularis F0396]
 gi|322517545|ref|ZP_08070414.1| proline--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|311100411|gb|EFQ58618.1| proline--tRNA ligase [Streptococcus vestibularis F0396]
 gi|322123805|gb|EFX95379.1| proline--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 620

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAV 213



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +AP+ + LI +   D+      +++ + L+  G DV  DD  
Sbjct: 500 KTPKGQYRYAWGINFPKELAPYDVHLITVNTKDEEANALTDRLESALAAEGYDVLIDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + TG
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVKIKATG 597


>gi|206889362|ref|YP_002248875.1| prolyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226701352|sp|B5YKW0|SYP_THEYD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206741300|gb|ACI20357.1| prolyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 571

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 109/247 (44%), Positives = 150/247 (60%), Gaps = 1/247 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P ++E P      SH LML+ G + Q + G++ +LPLG + L+ +N I++EE
Sbjct: 1   MRYSKLFIPTMREIPSGINAISHILMLKAGYVRQLAAGLFIFLPLGWRVLNKINMILKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+S+P L  A++W E+GR+ +  +EM RL DR  + M  G THEE+MT I   
Sbjct: 61  MERIGAQEISMPILHPAEIWQETGRWYTIKEEMFRLKDRTGRDMCLGMTHEEIMTWIASK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  +YQIQ K RDE RPR GV+R+REF+MKD+YSFD+  EG   SYN    +
Sbjct: 121 EIKSYRQLPQIWYQIQTKLRDEARPRGGVLRTREFIMKDSYSFDIDWEGLDKSYNLHAEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y RIF + GLK   + ++ G +G   SHEF+     GE + V C        I    ++ 
Sbjct: 181 YHRIFTKCGLKYYQVESDPGIMGDMESHEFMAPTPAGEDEIVLCDSCGYSANIEVAKSEL 240

Query: 240 DDIISLN 246
             + SLN
Sbjct: 241 PTLPSLN 247



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 9/171 (5%)

Query: 257 AATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+   K  D  P+  N     + IEVG+IF  GTKY+ P+ A F   DGK+  + M
Sbjct: 373 AQWADIRRVKEEDRCPKCGNSLKIEKAIEVGNIFKLGTKYTEPLHAYFLDKDGKEKPIIM 432

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           GSYGIG  RV AA IE +HD  GIIWP S++PF I +I +   D+      E++Y ++++
Sbjct: 433 GSYGIGPARVAAAAIEQNHDSDGIIWPKSISPFDIEIIPLNMDDEKTVSIAEELYEKVTE 492

Query: 375 V-------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +         +V  DD  E+ G +F  ADL+G P+Q+++G K + ++KVEI
Sbjct: 493 IYNSFADRHMEVLIDDRDERPGVKFKDADLIGIPIQIVIGKKGLKENKVEI 543


>gi|116669968|ref|YP_830901.1| prolyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|152074746|sp|A0JUT1|SYP_ARTS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116610077|gb|ABK02801.1| prolyl-tRNA synthetase [Arthrobacter sp. FB24]
          Length = 603

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 154/271 (56%), Gaps = 6/271 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R SK FL  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG   L  V  +IREE
Sbjct: 3   LRLSKLFLRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEKVIREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MAAIGAQEVHFPALLPKEPYEATNRWTEYGEGIFRLKDRKGGDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SYN    +
Sbjct: 123 LYSSYKDLPLSIYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYNAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF RLGL+ IP+ A +G +GG  S EF+   + GE     S       + +  T   
Sbjct: 183 YLKIFERLGLEVIPVAATAGAMGGSRSEEFLHPTEIGEDTFVRSAGGYAANVEAVTTVVP 242

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             I  ++      AP A   D  N    D+L
Sbjct: 243 AEIDFSN------APAAEIRDTPNTPTIDTL 267



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 97/161 (60%), Gaps = 3/161 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ ES+HD KG
Sbjct: 437 TARGIEMGHIFQLGRKYAEALELKVLDQNGKQVVVTMGSYGVGVTRAVAALAESNHDAKG 496

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD 396
           ++WP +VAP  + ++ +   +++   A E++   L   G +V +DD  +   G +F  A+
Sbjct: 497 LVWPRAVAPADVHVVAVGRGEEIFA-AAEQLSLELEAAGLEVIYDDRPKVSPGVKFGDAE 555

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           L+G P  + VG   V D  VEIK R +G  E++++E+ ++Y
Sbjct: 556 LIGVPTILAVGRGLV-DGVVEIKDRRSGEAENVAVEKAVDY 595


>gi|84498663|ref|ZP_00997420.1| prolyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84381060|gb|EAP96946.1| prolyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 593

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 157/271 (57%), Gaps = 5/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P DAE+  H+L++R G + + + GIY+WLPLG + L  V AI+REE
Sbjct: 1   MRMSSLFLRTLREDPVDAELPGHRLLVRAGYVRRAAPGIYTWLPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E++ P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   + 
Sbjct: 61  MDAIGAQELTFPALLPREPYEATNRWTEYGDNIFRLKDRKGGDYLLGPTHEEMFTLAVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD++ EG + SY     +
Sbjct: 121 MFSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFVMKDSYSFDVSDEGLEASYQAHRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF RLG + + + A SG +GG  S EF+ ++  GE   F   D   +    E     
Sbjct: 181 YIKIFDRLGFEYVIVSAMSGAMGGSASEEFLAVSAIGE-DTFVRNDAGTYAANVEAV--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +++  + V+    P A   D  +    D+L
Sbjct: 237 -VVTQAAPVDASGVPAAHVEDTPDTPTIDTL 266



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 9/175 (5%)

Query: 269 DSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V  +ARGIE+GHIF  G K++  +       +GK   V MGSYG+G  R VA
Sbjct: 410 DPSPDGNGVLHTARGIEMGHIFQLGRKFAEALDLKVLDENGKLVTVTMGSYGVGVSRAVA 469

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           A+ E + D  G+IWP +V P  + ++     +  D       ++I A L   G  V +DD
Sbjct: 470 AIAEDNLDDLGLIWPRAVTPADVHVVATGKNRDRDGDVFAKADEITASLEAQGISVLYDD 529

Query: 384 MGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E++  G +F  ++L+G P  V+VG K + +  +EIK R +G R +++++ VI+
Sbjct: 530 R-EKVSPGVKFKDSELIGIPTIVVVG-KSLENGVIEIKDRRSGERREVAVDSVID 582


>gi|320547753|ref|ZP_08042037.1| proline--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320447513|gb|EFW88272.1| proline--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 618

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++++  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQTQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y +   +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDETYEEYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 16/190 (8%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  +  P+ K V   ARGIE+GHIF  GT+YS  M AT    +G+   + MG YG
Sbjct: 420 DIREVKEGEISPDGKGVLKFARGIEIGHIFKLGTRYSESMGATILDQNGRAVPIIMGCYG 479

Query: 319 IGAMRVVAAVIES------SHDGKG-------IIWPDSVAPFKISLINIKAHDQVCRDAC 365
           IG  R+++AVIE       S   KG       I +P  +APF + +I +   D+  +   
Sbjct: 480 IGVSRILSAVIEQHARLFVSKTPKGAYRFAWGINFPKELAPFDVHVITVNVKDEEAQALT 539

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+ A L + G +V  DD  E++GS+F+ +DL+G P++V VG K  +D  VE+K + TG 
Sbjct: 540 AKVEAELVEKGYEVLVDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKATGD 598

Query: 426 REDMSLEEVI 435
             +++ E +I
Sbjct: 599 TIEVNAENLI 608


>gi|313891198|ref|ZP_07824817.1| proline--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120561|gb|EFR43681.1| proline--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 617

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGIYAYLPLANRTIEKLKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNDEDLDITYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRSGLEFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  + AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSNSLGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D   K+   L+  G +V  DD  
Sbjct: 500 KTPKGDYRFAWGINFPEELAPFDVHLITVNTKDQEAQDLTSKVEKDLTAKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P+++ VG K  ++  VEIK + +G
Sbjct: 560 ERVGSKFSDSDLIGLPIRITVGKK-AAEGIVEIKIKASG 597


>gi|332523321|ref|ZP_08399573.1| proline--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314585|gb|EGJ27570.1| proline--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 617

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 138/214 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGIYAYLPLANRTIEKLKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNDEDLDITYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R GL+   +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAIT 214



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  + AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSKSLGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D   K+   L   G +V  DD  
Sbjct: 500 KTPKGDYRFAWGINFPEELAPFDVHLITVNTKDQDAQDLTSKVEHDLMTKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P+++ VG K  S+  VEIK + +G
Sbjct: 560 ERVGSKFSDSDLIGLPIRITVGKK-ASEGIVEIKIKASG 597


>gi|325475063|gb|EGC78249.1| prolyl-tRNA synthetase [Treponema denticola F0402]
          Length = 595

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++ ++P L+E P +A + SHKL+LR GMI   + G++++LPLG KA   V  IIREE
Sbjct: 1   MKMTQMYMPTLREIPNEAVVESHKLLLRAGMIRNLANGLFAYLPLGLKAFRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E   P +   ++W ESGR+DS G E+LR+ +R ++ ++  PT EE  T + ++
Sbjct: 61  MDAIGCLEFKPPVIVPGEIWQESGRWDSMGPELLRIKNRLNQELVVSPTAEEAFTALLKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+N P   YQI  K+RDE+RPR+G+MR+REF MKDAYSF    +    +Y     +
Sbjct: 121 ELSSYKNYPLLTYQINTKYRDEIRPRYGLMRTREFTMKDAYSFHTNDKSLDEAYLSFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFC 223
           Y++IF R GL  I ++A+SG +GG  S EF+V +  G +T + C
Sbjct: 181 YIKIFKRCGLTVIGVKADSGAMGGSGSQEFMVESSVGDDTLLLC 224



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +G E+GHIF  G KY+  M+ T+   +GK  +  MG YGIG  R+ A+++E  HD  G
Sbjct: 426 TKKGNELGHIFKLGYKYTKAMNMTYLDENGKQQHPSMGCYGIGLDRLTASIVEEHHDEDG 485

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+APF+++++ IK   ++ ++A +++Y    K G +   DD  E+ G +F   DL
Sbjct: 486 IIWPMSIAPFQVAIVPIKYEGEMQKEA-DRLYEECKKRGIEALLDDRKERTGVKFKDMDL 544

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           +G P++++VG K + +  +E K R
Sbjct: 545 IGIPIRLVVGEKNLPN--IEFKLR 566


>gi|289705162|ref|ZP_06501565.1| proline--tRNA ligase [Micrococcus luteus SK58]
 gi|289558106|gb|EFD51394.1| proline--tRNA ligase [Micrococcus luteus SK58]
          Length = 608

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 141/226 (62%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P +AE+ASH+L++R G I + + GIYSWLPLG K L  V  I+REE
Sbjct: 3   LRMSTLFLRTLRDDPAEAEVASHRLLVRAGYIRRAAPGIYSWLPLGLKVLAQVERIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  +GR+D YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MDAIGAQEVHFPALLPREPYEATGRWDEYGDGLFRLQDRRGNDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y     +
Sbjct: 123 LYSSYKDLPAYLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFTVDDAGLDAAYEAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           YLRIF RLGL+ +P+RA SG +GG  S EF+   + GE   F   D
Sbjct: 183 YLRIFDRLGLEVVPVRATSGAMGGSRSEEFLHPTEVGE-DTFVESD 227



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 82/147 (55%), Gaps = 5/147 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GHIF  G KY+  +        GK   V MGSYGIG  R VAA+ E  HD KG+ 
Sbjct: 443 RGMEMGHIFQLGRKYAEALDLKVLDVHGKQVVVTMGSYGIGITRAVAAIAERYHDDKGLA 502

Query: 340 WPDSVAPFKIS-LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           WP +VAP  +  ++  K  D +   A E + A L   G  V  DD  +   G +F  A+L
Sbjct: 503 WPRAVAPADVHVVVATKGEDGLA--AAETLAAGLEAEGLTVLVDDRPKVSPGVKFKDAEL 560

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G P  V+VG + ++D ++E+K R TG
Sbjct: 561 IGVPTAVVVG-RGLADGELELKDRATG 586


>gi|54026044|ref|YP_120286.1| prolyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|81822939|sp|Q5YSB9|SYP_NOCFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|54017552|dbj|BAD58922.1| putative prolyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 585

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 139/223 (62%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++R E 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLRVLRKVEDVVRAEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+S+P L   D +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEISLPALLPRDPYETTNRWTEYGDSLFRLHDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  +G K SYN    +Y
Sbjct: 124 YNSYKDLPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDEDGLKASYNAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RLG+K + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFDRLGVKYVIVAATSGAMGGSASEEFLADSPVGEDTYVIC 226



 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 2/151 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIE+GHIF  G KY+        G +GK   + MGSYGIG  R+VA + E  HD KG
Sbjct: 421 AARGIEIGHIFQLGYKYTDAFEVDVLGENGKPVRLIMGSYGIGVSRMVAVIAEQQHDEKG 480

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP +VAPF + ++ +   D+  R   E++ A L   G DV +DD     G +F  A+L
Sbjct: 481 LRWPAAVAPFDVHVV-VANKDEAARTGAEQVVAGLDAQGLDVLFDDRTASPGVKFKDAEL 539

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           LG P  V++G  + +D  VE+++R TG  E+
Sbjct: 540 LGMPWVVVIGRGW-ADGTVELRNRFTGEAEN 569


>gi|322386937|ref|ZP_08060561.1| proline--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321269219|gb|EFX52155.1| proline--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 616

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|239917224|ref|YP_002956782.1| prolyl-tRNA synthetase, family II [Micrococcus luteus NCTC 2665]
 gi|281414302|ref|ZP_06246044.1| prolyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|259511606|sp|C5C9S6|SYP_MICLC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239838431|gb|ACS30228.1| prolyl-tRNA synthetase, family II [Micrococcus luteus NCTC 2665]
          Length = 608

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 141/226 (62%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P +AE+ASH+L++R G I + + GIYSWLPLG K L  V  I+REE
Sbjct: 3   LRMSTLFLRTLRDDPAEAEVASHRLLVRAGYIRRAAPGIYSWLPLGLKVLAKVERIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  +GR+D YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MDAIGAQEVHFPALLPREPYEATGRWDEYGDGLFRLQDRRGNDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y     +
Sbjct: 123 LYSSYKDLPAYLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFTVDDAGLDAAYEAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           YLRIF RLGL+ +P+RA SG +GG  S EF+   + GE   F   D
Sbjct: 183 YLRIFDRLGLEVVPVRATSGAMGGSRSEEFLHPTEVGE-DTFVESD 227



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 5/147 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GHIF  G KY+  +        GK   V MGSYGIG  R VAA+ E  HD KG+ 
Sbjct: 443 RGMEMGHIFQLGRKYAEALDLKVLDVHGKQVVVTMGSYGIGITRAVAAIAERYHDDKGLA 502

Query: 340 WPDSVAPFKIS-LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           WP +VAP  +  ++  K  D +   A E + A L   G  V  DD  +   G +F  A+L
Sbjct: 503 WPRAVAPADVHVVVATKGEDGLA--AAETLAASLEAEGLTVLVDDRPKVSPGVKFKDAEL 560

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G P  V++G + ++D ++E+K R TG
Sbjct: 561 IGVPTTVVIG-RGLADGELELKDRATG 586


>gi|210623134|ref|ZP_03293600.1| hypothetical protein CLOHIR_01550 [Clostridium hiranonis DSM 13275]
 gi|210153811|gb|EEA84817.1| hypothetical protein CLOHIR_01550 [Clostridium hiranonis DSM 13275]
          Length = 580

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 137/225 (60%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P  +E P D EI SHKLM+R+GMI + + GIY+ LPLG K    +  II+EE
Sbjct: 17  MRFSKMFIPTKREIPTDVEIESHKLMIRSGMIKKSASGIYNQLPLGLKVERKIENIIKEE 76

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM    L  ++LW ESGR+   G EM RL DR  K    GPTHEEV TDI R 
Sbjct: 77  VEDADFREMLCSALIPSELWQESGRWARRGAEMFRLEDRTGKEFCLGPTHEEVFTDIVRQ 136

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE +PRFG +R++ F M DAYSFD   E    SY +M  +
Sbjct: 137 EVSSYKQLPVKLYQIQSKYRDEKKPRFGAIRTKSFTMFDAYSFDKDEESLNKSYEEMIAA 196

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCS 224
           + RIF R G+K   + AESG  G   S EF+V ++ GE ++  CS
Sbjct: 197 FKRIFDRCGVKYSLVEAESGIEGAPSSIEFMVKSEIGEDELAICS 241



 Score =  119 bits (298), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 93/151 (61%), Gaps = 1/151 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G K+S  M+A ++  +  D Y+ +G Y IG  R+ A +IE + D  GI+
Sbjct: 418 RGIEIGHIFKAGQKFSENMNAMYRSEEETDEYIHLGCYEIGTERLTATIIEQNFDADGIV 477

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAPF++ +I +   ++   +  E+IY  L  +G DV  DD   + G++F  +DL+G
Sbjct: 478 WPLSVAPFEVEIIPVNLKNEDVVNTAERIYKELKLMGVDVLIDDRDARPGTKFKDSDLIG 537

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            P+++ VG + + +  VE+K R +  RE +S
Sbjct: 538 IPVRITVG-RDLKEGLVEMKFRNSEERELIS 567


>gi|24380149|ref|NP_722104.1| prolyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|81845206|sp|Q8DSJ9|SYP_STRMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24378150|gb|AAN59410.1|AE015006_3 putative prolyl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 616

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 138/214 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DA++ SH LM+R G + Q S GIYS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSNMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYSYLPLAHRVIEKIKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY +YG+++ +L +R+    I GPTHEE  T++ R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYGTYGEDLYKLKNRDQSDFILGPTHEETFTNLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHADYDSLDATYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R+GL    +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRVGLDFKAIIGDGGAMGGKDSQEFMAVT 214



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 14/174 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---- 334
           ARGIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+++AVIE +      
Sbjct: 440 ARGIEIGHIFKLGTRYSESMGANILDENGRSIPIIMGSYGIGVSRILSAVIEQNARIFVN 499

Query: 335 ---------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                      G+ +P ++APF + LI +   D+V +    K+   L      V  D+  
Sbjct: 500 KTPKGAYRFSWGVNFPKTLAPFDVHLITVNVKDEVSQQLTAKVEESLVDAHYSVLTDNRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           E+IGS+F+ +DL+G P++V VG K  SD  VE+K + TG   +++ E ++   S
Sbjct: 560 ERIGSKFSDSDLIGLPIRVTVGKK-ASDGIVEVKIKSTGDTIEVNAENLLETLS 612


>gi|42527722|ref|NP_972820.1| prolyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|81831353|sp|Q73KJ8|SYP_TREDE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41818550|gb|AAS12739.1| prolyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 595

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++ ++P L+E P +A + SHKL+LR GMI   + G++++LPLG KA   V  IIREE
Sbjct: 1   MKMTQMYMPTLREIPNEAVVESHKLLLRAGMIRNLANGLFAYLPLGLKAFRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E   P +   ++W ESGR+DS G E+LR+ +R ++ ++  PT EE  T + ++
Sbjct: 61  MDAIGCLEFKPPVIVPGEIWQESGRWDSMGPELLRIKNRLNQELVVSPTAEEAFTALLKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+N P   YQI  K+RDE+RPR+G+MR+REF MKDAYSF    +    +Y     +
Sbjct: 121 ELSSYKNYPLLTYQINTKYRDEIRPRYGLMRTREFTMKDAYSFHTNDKSLDEAYLSFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFC 223
           Y++IF R GL  I ++A+SG +GG  S EF+V +  G +T + C
Sbjct: 181 YIKIFKRCGLTVIGVKADSGAMGGSGSQEFMVESSVGDDTLLLC 224



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +G E+GHIF  G KY+  M+ T+   +GK  +  MG YGIG  R+ A+++E  HD  G
Sbjct: 426 TKKGNELGHIFKLGYKYTKAMNMTYLDENGKQQHPSMGCYGIGLDRLTASIVEEHHDEDG 485

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+APF+++++ IK   ++ ++A +++Y    K G +   DD  E+ G +F   DL
Sbjct: 486 IIWPMSIAPFQVAIVPIKYEGEMQKEA-DRLYEECKKRGIEALLDDRKERTGVKFKDMDL 544

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           +G P++++VG K + +  +E K R
Sbjct: 545 IGIPIRLVVGEKNLPN--IEFKLR 566


>gi|227486766|ref|ZP_03917082.1| proline--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235236|gb|EEI85251.1| proline--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 563

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 144/219 (65%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E+P DAE ASHKL++R   I Q + GIYS+LPLG+K L+ + AI+R+  +  GAI
Sbjct: 1   MPTLREDPVDAETASHKLLVRGAFIRQQASGIYSFLPLGKKVLNKIEAIVRDAMDSYGAI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E++   LQ   +W +S R++++G EM +L DR+++    GPT EE   D+ +  + SY+ 
Sbjct: 61  EVATSILQPRQIWDKSTRWETFGPEMFKLKDRHEREYALGPTAEEAFVDLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+FLMKDAY+FD    G + +Y  M+ SY   F +
Sbjct: 121 LPVNLYQIVDKFRDEKRPRFGINRSRDFLMKDAYTFDEDQAGLEKAYMNMWESYEYAFDK 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + L    +  ++G +GG  SHEFI L+++GE  +  +++
Sbjct: 181 MKLDYKIVEGDTGAMGGHKSHEFIALSESGEGVILYTEN 219



 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 1/159 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEVG+IF  GTKYS  + ATF   +G   Y +MGSYGIG  R ++A++E  HD KG
Sbjct: 394 SARGIEVGNIFQLGTKYSKALDATFLDQNGVSKYFEMGSYGIGISRSISAIVEQYHDDKG 453

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAPF++ +  IK +D+      E IY +L     DV  DD  E+ G +F   DL
Sbjct: 454 IIWPTSVAPFEVIITLIKPNDEDQAKLAEDIYKKLKARRIDVVLDDRKERPGVKFNDRDL 513

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G P ++ VG K   DS VE   R     +++   E IN
Sbjct: 514 IGIPYRITVG-KDAKDSIVEYSTRAEMENKNIDANEAIN 551


>gi|300933077|ref|ZP_07148333.1| prolyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 592

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 139/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L  V  ++R E 
Sbjct: 4   RMSTLFLRTLRDDPADAEVPSHKLLVRAGYIRRAAPGVYSWLPLGLRVLRKVENVVRNEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+S P L   + +  +GR+  YG  +LRL DR     + GPTHEE+ T + +  
Sbjct: 64  DAIGAQELSFPALLPREPYETTGRWTEYGDALLRLKDRKGADYLLGPTHEEMFTSVVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+  EG + SY+K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQNKYRDEERPRAGILRGREFIMKDSYSFDMDDEGLERSYHKHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            +IF  LG++     A SG +GG  S EF+ +A+ GE
Sbjct: 184 QKIFDTLGVQYAICAATSGAMGGSASEEFLAVAENGE 220



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+          +GK     MGSYGIG  R+VA + E  HD  G+
Sbjct: 428 ARGIEIGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSYGIGVSRLVAVLAEQMHDEYGL 487

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP +VAP+ + ++ I   D    +A EK+   LS  G DV  DD  +   G +F  ++L
Sbjct: 488 RWPVAVAPYDVHVV-IANKDAAAAEAAEKLTTELSSTGLDVLIDDRPKVSPGVKFKDSEL 546

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG PL V+VG  F ++ KVE+++RL+G + +++ E+ ++    + +
Sbjct: 547 LGMPLVVVVGRGF-AEGKVELRNRLSGDKLEVAYEDAVSAVQQQLT 591


>gi|149017957|ref|ZP_01834416.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|147931521|gb|EDK82499.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
          Length = 617

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E   DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMSSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  PTL SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPTLLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 560 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 597


>gi|182414610|ref|YP_001819676.1| prolyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|177841824|gb|ACB76076.1| prolyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 590

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/226 (42%), Positives = 148/226 (65%), Gaps = 7/226 (3%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+YF+P L+E+P DAEIASHKL++R G++ +   G+Y++LPLG + +  +  + REE  R
Sbjct: 5   SQYFVPTLKESPADAEIASHKLLIRAGLVRKLGGGLYTYLPLGLRVMQKLTQLCREELER 64

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-------KAMIYGPTHEEVMTD 116
            GAIE+ +P +   +LW +  R+ +  + M R     D          + GPTHEE++T 
Sbjct: 65  AGAIELWMPHVHPVELWQQGPRWAAAREIMFRADSAGDGKHGPREPEFVLGPTHEEIVTP 124

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + ++ I SYR+LP  F+QI  KFR+E+RPRFG+MR+REF+M DAYSFD+  + +  SY  
Sbjct: 125 LVKAEITSYRDLPKNFFQIATKFRNEIRPRFGLMRAREFVMMDAYSFDVDDDRAIKSYQA 184

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           M  +Y   F R+G+++I + A++G +GG  SHEF+V A+ G+  V 
Sbjct: 185 MKAAYEAFFRRIGVQAIAVEADTGVMGGSFSHEFMVPAEVGDDDVI 230



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 81/142 (57%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS    A +     + H + MGSYGIG  R + A+IE SHD  GI+
Sbjct: 419 RGIEVGHIFKLGTKYSEKSGAVYTDDQKQSHLMVMGSYGIGISRTLQAIIEQSHDADGIV 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP + APF + +  +        D   K+ A   K G +V  DD  E+ G +F  ADL+G
Sbjct: 479 WPWNSAPFHVLICVLDPQLAEAVDLARKLAAAAEKAGAEVLVDDRAERPGVKFKDADLVG 538

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
            PL++ +G K + +  VE+K R
Sbjct: 539 IPLRLTIGGKGLKEGVVELKWR 560


>gi|260773310|ref|ZP_05882226.1| prolyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612449|gb|EEX37652.1| prolyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 548

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 131/193 (67%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRNEVSSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  +G + SY  M  +Y + F R+GL   P+ A++G IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKDGLEKSYQAMHDAYCKAFDRMGLDYRPVLADTGAIGGN 180

Query: 206 LSHEFIVLADTGE 218
            SHEF VLA++GE
Sbjct: 181 GSHEFHVLAESGE 193



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK   ++MG YGIG  RVVA+ IE +HD  GII
Sbjct: 382 RGIEVGHIFQLGTNYSEKMNCGVLDSNGKHTILEMGCYGIGVSRVVASAIEQNHDKYGII 441

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A E +YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 442 WPDALAPFQVAIVPMNMHKSERVQQAAETLYAELTAAGIEVLFDDRKERPGVMFSDMELI 501

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P  +I+G + + +   E KHR +G +  + +  ++++   +  ++
Sbjct: 502 GIPHTIIIGDRSMDEGNFEYKHRRSGEKSAVPMANMVSFIHEQLGDS 548


>gi|297202727|ref|ZP_06920124.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197713306|gb|EDY57340.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 567

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/254 (41%), Positives = 148/254 (58%), Gaps = 8/254 (3%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P +   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPAILPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQHKYRDEARPRAGILRGREFLMKDSYSFDTEDEGLARSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN----- 236
            ++F RLGL      A +G +GG  S EF+  A+ GE   F      DF   +E      
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDFAANTEAITYEL 246

Query: 237 --TDFDDIISLNSI 248
              D D + +L  I
Sbjct: 247 KPVDADGVAALEEI 260



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E + D KG+ 
Sbjct: 409 RAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADDKGLC 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + ++      Q+  +    +  +L + G  V  DD  G   G +F  ++L+
Sbjct: 469 WPAEVAPADVHVVAAGKALQI--ELALDVSEKLREAGLRVLVDDRAGVSPGVKFTDSELI 526

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P +++V  +  ++  +E+K R TG RE+++++E I
Sbjct: 527 GVP-KILVAGRRSAEGVLELKDRRTGEREELTVDEAI 562


>gi|145295898|ref|YP_001138719.1| prolyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|166980117|sp|A4QF01|SYP_CORGB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|140845818|dbj|BAF54817.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 588

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 137/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + GIYSWLPLG +A+ N+ A++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGIYSWLPLGLRAVRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPALLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAATVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD++  G   SY K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMSDAGLDESYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL+    +A SG +GG  S EF+ +++ GE
Sbjct: 184 QRIFDRLGLEYAICQATSGAMGGSASEEFLAVSENGE 220



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 3/144 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+          +GK     MGSYG+G  R++A + E  HD  G+
Sbjct: 422 ARGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGLGVTRLLAVLAEQRHDDAGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            W   VAP+++ ++     D    +A E+  A LS  G DV +DD  +   G +F  A+L
Sbjct: 482 NWSVEVAPYQVHVVAAN-KDAAAIEAAERFAAELSAAGLDVLFDDRPKVSPGVKFKDAEL 540

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           LG P  +I+G  + ++ KVE++ R
Sbjct: 541 LGMPFALILGRGY-AEGKVELRVR 563


>gi|302554518|ref|ZP_07306860.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302472136|gb|EFL35229.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 566

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 143/238 (60%), Gaps = 10/238 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLLAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P +   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAVGAQEVLLPAILPREPYEATGRWEEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQNKYRDEARPRAGILRGREFLMKDSYSFDTDDEGLAQSYALHREAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +IF RLGL      A +G +GG  S EF+  A+ GE        F D P    N DF
Sbjct: 188 QKIFARLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDT------FADCP----NCDF 235



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E S D KG+ 
Sbjct: 408 RAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQSADDKGLC 467

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  VAP  + +  + A   +  +    I  +L+  G  V  DD  G   G +F  ++L+
Sbjct: 468 WPKEVAPADVHV--VAAGKALQTELALDISGKLAAAGVRVLVDDRAGVSPGVKFTDSELI 525

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P Q++V  +  +D  VE+K R TG RE++++EE +
Sbjct: 526 GVP-QILVAGRRAADGVVELKDRRTGEREELTVEEAV 561


>gi|19746872|ref|NP_608008.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|81847886|sp|Q8NZB4|SYP_STRP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19749114|gb|AAL98507.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
          Length = 618

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R+
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLI 608


>gi|19553198|ref|NP_601200.1| prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62390834|ref|YP_226236.1| prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|81847611|sp|Q8NP31|SYP_CORGL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21324764|dbj|BAB99387.1| Prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41326172|emb|CAF20335.1| PROBABLE PROLYL-TRNA SYNTHETASE PROTEIN [Corynebacterium glutamicum
           ATCC 13032]
          Length = 588

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 137/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + GIYSWLPLG +A+ N+ A++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGIYSWLPLGLRAVRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPALLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAATVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD++  G   SY K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDISDAGLDESYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL+    +A SG +GG  S EF+ +++ GE
Sbjct: 184 QRIFDRLGLEYAICQATSGAMGGSASEEFLAVSENGE 220



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 3/144 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+          +GK     MGSYG+G  R++A + E  HD  G+
Sbjct: 422 ARGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGLGVTRLLAVLAEQRHDDAGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            W   VAP+++ ++     D    +A E+  A LS  G DV +DD  +   G +F  A+L
Sbjct: 482 NWSVEVAPYQVHVVAAN-KDAAAIEAAERFAAELSAAGLDVLFDDRPKVSPGVKFKDAEL 540

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           LG P  +I+G  + ++ KVE++ R
Sbjct: 541 LGMPFALILGRGY-AEGKVELRVR 563


>gi|21911224|ref|NP_665492.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896602|ref|NP_802952.1| prolyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|81847409|sp|Q8K5S7|SYP_STRP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21905437|gb|AAM80295.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811856|dbj|BAC64785.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 618

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R+
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLI 608


>gi|319948036|ref|ZP_08022210.1| prolyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438275|gb|EFV93221.1| prolyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 581

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 140/225 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVLSHKLLVRAGYIRRVAPGVYSWLPLGLRTLRRVEQVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+S+P L   + +  +GR+  YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  DAFGAQEISLPALLPREPYETTGRWTEYGPALFRLKDRKGNDMMLGPTHEELFTLTVQGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDVDDAGLGRSYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            RIF RLG++ +   A SG +GG  S EF+ ++  GE     S D
Sbjct: 184 QRIFDRLGIEYVICAATSGAMGGSASEEFLAVSAAGEDTFVRSTD 228



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 6/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+        G +GK   V MGSYGIG  R+VA + E   D KG+
Sbjct: 418 ARGIEIGHIFQLGRKYTDAFGFDVLGENGKPARVTMGSYGIGVSRLVAVLAEQFADDKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP   AP  + ++ I   DQ   D    +     +   +V +DD     G +F  A+L+
Sbjct: 478 VWPAEAAPADVHVV-IANKDQAAIDGAATLVEAFDRARLEVLFDDRKASPGVKFKDAELI 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVI 435
           G P  V+VG  + S+  VE++HR TG    +  D + EE+I
Sbjct: 537 GVPWVVVVGRGW-SEGTVELRHRATGDVTQVAVDGAAEEII 576


>gi|163839404|ref|YP_001623809.1| prolyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162952880|gb|ABY22395.1| prolyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 619

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 166/311 (53%), Gaps = 26/311 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAEIASHKLM+R G I + + GIYSWLPLG + L  V AIIREE
Sbjct: 16  LRLSTLFLRTLREDPVDAEIASHKLMVRAGYIRRAAPGIYSWLPLGLRVLGKVEAIIREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G+ E+  P L   + +  + R+  YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 76  MAAIGSQEVHFPALLPCEPYEATNRWTEYGDGIFRLKDRKGNDYLLAPTHEEMFTLLVKD 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + +QIQ K+RDE RPR G+MR REF+MKD+YSFD+   G   SY     +
Sbjct: 136 LYGSYKDLPVSLFQIQNKYRDEARPRAGLMRGREFIMKDSYSFDIDDAGLDISYEAHRAA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE------------------TQVF 222
           Y +IF RL L+ + ++A +G +GG  S EF+     GE                  T V 
Sbjct: 196 YFKIFERLSLEVVAVKATAGAMGGSKSEEFLHPTPVGEDTYVRSAGGYAANVEAVSTVVP 255

Query: 223 CSKDFMDFP------IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--N 274
              DF D         P+  T    + + NS+V +  AP+ A   + N  L   LP   +
Sbjct: 256 ADIDFADLADAMVHDTPNTPTIETLVAAANSMVPRADAPWTAADTLKNVVLAVDLPAVGD 315

Query: 275 KRVSARGIEVG 285
           K+   R + +G
Sbjct: 316 KKAERRLVVIG 326



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 83/147 (56%), Gaps = 3/147 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE GH+F  G KY+          +GK   V MGSYG+G  R VAA+ E ++D +G+
Sbjct: 453 ARGIETGHVFQLGRKYAEIFDLKVLDQNGKQVVVTMGSYGVGVTRAVAAIAEGNNDDRGL 512

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP +VAP  + ++ +   D    +  EK+ A L   G DV  DD  +   G +F  A+L
Sbjct: 513 VWPIAVAPADVHVVAV-GRDSEVFETAEKLAADLEAAGLDVILDDRQKVSPGVKFGDAEL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G P+ + VG   V D  VE+K+R TG
Sbjct: 572 IGVPMVLAVGRGLV-DGVVELKNRRTG 597


>gi|164658475|ref|XP_001730363.1| hypothetical protein MGL_2745 [Malassezia globosa CBS 7966]
 gi|159104258|gb|EDP43149.1| hypothetical protein MGL_2745 [Malassezia globosa CBS 7966]
          Length = 509

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/476 (30%), Positives = 230/476 (48%), Gaps = 61/476 (12%)

Query: 2   RRSKYFLPILQENPRDA--EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R S+ ++P +  +   +   + S + +LR G I Q + G Y++LP+G + L  + AII +
Sbjct: 24  RLSRLYVPTVSADALGSLDTLESVRRLLRGGYIRQSASGTYTYLPIGLRMLKKLTAIIED 83

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++  A ++ +P L S  LW ++GR+++ G E+ RL DR    MI  PTHEE +T +  
Sbjct: 84  EMHQISASQLELPQLLSPALWHKTGRFEAMGSELFRLKDRRGNDMILAPTHEEEITKLVG 143

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I S ++LP   +QI  KFRDE RPR G++R++EFLMKD YSFD++ E ++ +Y  +  
Sbjct: 144 MEIDSAKSLPVRVFQIGRKFRDEPRPRAGLLRTKEFLMKDMYSFDVSVEDARITYEDVLC 203

Query: 180 SYLRIFHRL-------GLKSIPMR--AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +Y RIF R+         ++  MR  A+SG +GG LSHEF V    GE  +  S D   +
Sbjct: 204 AYERIFQRVFCWDQARSSETTWMRATADSGTMGGKLSHEFHVPDPAGEDTLL-SCDQCSY 262

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK----LFDSLPENKRVSARGIEVGH 286
              + N +    +   +  E+    +     V N         S         + IEVGH
Sbjct: 263 ---TSNVECAKSLGRGTKQEEQGHQHGRDETVTNAARAGDRCASCTHGTLREHKAIEVGH 319

Query: 287 IFYFGTKYS--LPMSATFKGADGKDHY---VQMGSYGIGAMRVVAAVIESS-------HD 334
            F  GT+YS  L      + AD K      +QMG YGIG  RV+ A+ + +       H 
Sbjct: 320 TFLLGTRYSEALGYHVVPRHADPKRPERVPLQMGCYGIGITRVLGALAQRAAREFDAWHA 379

Query: 335 GK----------------GIIWPDSVAPFK-ISLINIKAHDQVCRDACEKIYARLSKVGC 377
                             G  WP  +APF+ + L +   H  +    C ++   L+    
Sbjct: 380 ATAQTSSMPLQRRRPQRVGFFWPCEIAPFRALVLPSTPQHMDIAMRLCTQLDGGLAVTWA 439

Query: 378 ------------DVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                       DV  DD   Q +GS+   +DL+G+P+ +I+G  +    +VE++ 
Sbjct: 440 DGMQELLHVPNEDVALDDRTHQSLGSRLFDSDLMGYPIVLILGKHYDQTGEVEVRQ 495


>gi|157736649|ref|YP_001489332.1| prolyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|166980098|sp|A8ERT9|SYP_ARCB4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157698503|gb|ABV66663.1| prolyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 568

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 140/224 (62%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P  +E P DA + SH+ ++R G I Q   GIY ++PLG+  L+ + AI++EE
Sbjct: 1   MKFSKMFIPTTKETPNDATLPSHQYLVRGGFIAQTGAGIYDFMPLGKIVLEKIRAIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+    +    LW ESGR  + G EMLR  DR +   +  PT+EE + ++ ++
Sbjct: 61  MDEAGANEVQFGFVTPLTLWQESGRATTMGAEMLRFKDRKNGEFVLSPTNEEAVVNMVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQI  KFRDE RPRFG+MR REFLMKD YSF  + E     +N M  +
Sbjct: 121 RITSYKDLPLHLYQINTKFRDEARPRFGLMRGREFLMKDGYSFHSSEEDLVREFNLMETT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y +I+ +LGL    + A+SG IGG  S EF V+AD+GE T V C
Sbjct: 181 YKKIYTKLGLDFRVVAADSGAIGGSGSKEFHVIADSGEDTLVVC 224



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIE GHIF  GTKYS  M+A F   +GK     MG YGIG  R+VAAVIE +HD KG 
Sbjct: 404 TKGIEAGHIFQLGTKYSSAMNANFLDENGKAKPFIMGCYGIGVSRLVAAVIEQNHDDKGC 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADL 397
           IW  + APF + +I   +  +      E++Y++L + G     DD +  + G + +  +L
Sbjct: 464 IWTKATAPFMVDIIVSNSKKEEEAKVGEELYSKLKQAGISTILDDRINARFGFKMSDFEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           LGFP  V++G K + D  VEI  R T  + D+ ++EVI+
Sbjct: 524 LGFPYAVVIGKK-LEDGLVEIVDRKTLEKIDVKVDEVIS 561


>gi|303557|dbj|BAA03654.1| DrpA protein [Escherichia coli W3110]
          Length = 155

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 116/155 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREF 155


>gi|56808720|ref|ZP_00366440.1| COG0442: Prolyl-tRNA synthetase [Streptococcus pyogenes M49 591]
 gi|94995163|ref|YP_603261.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|209560100|ref|YP_002286572.1| prolyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|114152263|sp|Q1J4L9|SYP_STRPF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701346|sp|B5XIL5|SYP_STRPZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94548671|gb|ABF38717.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|209541301|gb|ACI61877.1| Prolyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 618

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLI 608


>gi|258652410|ref|YP_003201566.1| prolyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258555635|gb|ACV78577.1| prolyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 585

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 137/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L NV  I+REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHRLLVRAGYIRRAAPGIYTWLPLGYRVLRNVERIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  DAIGAQEVHFPALLPREPYEATGRWTEYGDNLFRLQDRKQGDYLLGPTHEEMFTLLVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY+ LP + YQIQ K+RDE RPR G++R REF+MKD+YSFDL   G   SY +   +Y
Sbjct: 124 YSSYKGLPLSLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDAGLAASYQRHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +RIF RLGL+ + + A SG +GG  S EF+     GE
Sbjct: 184 IRIFDRLGLRYVIVAAMSGAMGGSASEEFLADCVNGE 220



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYGIG  R VAA+ ESS+D KG+
Sbjct: 422 ARGIEMGHIFQLGRKYAQALGLQVLDENGKLVTVTMGSYGIGVSRAVAAIAESSYDDKGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  VAP  + ++ I        D  E I A L   G  V  DD    +G +FA A+L+
Sbjct: 482 IWPREVAPADVHVV-IAGKSAEIVDTAELIAAGLDAAGITVMLDDRNASVGVKFADAELI 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P   +VG + V++  VE++ R +G + ++ L EV+     R 
Sbjct: 541 GVPTICVVG-RGVANGVVEVRDRASGDKTEVPLVEVVEQLRARV 583


>gi|94989304|ref|YP_597405.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94993193|ref|YP_601292.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|114152260|sp|Q1J9R3|SYP_STRPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152261|sp|Q1JJW2|SYP_STRPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94542812|gb|ABF32861.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546701|gb|ABF36748.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 618

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 100/170 (58%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      G+ +P  +APF + LI +   DQV +D   K+ A L+  G DV  DD  
Sbjct: 500 KTPKGDYRYAWGVNFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLTAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGASIEVNAENLI 608


>gi|332365812|gb|EGJ43569.1| proline--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 616

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I   
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVHD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  L    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSESMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  
Sbjct: 500 KTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597


>gi|15675760|ref|NP_269934.1| prolyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71911486|ref|YP_283036.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|81856026|sp|Q99XY4|SYP_STRP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13622982|gb|AAK34655.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71854268|gb|AAZ52291.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 618

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLI 608


>gi|50915027|ref|YP_060999.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|139474448|ref|YP_001129164.1| prolyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|81822684|sp|Q5X9U7|SYP_STRP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112957|sp|A2RGI4|SYP_STRPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50904101|gb|AAT87816.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|134272695|emb|CAM30966.1| prolyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 618

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGAKILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQ  +D   K+ A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQAAQDLTAKLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLI 608


>gi|94991250|ref|YP_599350.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|114152262|sp|Q1JEV3|SYP_STRPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94544758|gb|ABF34806.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 618

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    + +   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENSRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLI 608


>gi|315222088|ref|ZP_07863998.1| prolyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188838|gb|EFU22543.1| prolyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 619

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 137/214 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQISAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R  ++   +  + G +GG  S EF+ + 
Sbjct: 181 YENIFTRSEIEFKGIIGDGGAMGGKDSQEFMAIT 214



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+AT    +G+   V MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSESMNATVLDENGRAVPVVMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   D+      E++ A L K G +V  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLIPVNVKDEEALVLTEQLEAELVKAGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+ G +F+ +DL+G P++V VG K  +D  VE+K + TG
Sbjct: 560 ERAGVKFSDSDLIGLPIRVTVGKK-AADRIVEVKIKATG 597


>gi|325962798|ref|YP_004240704.1| prolyl-tRNA synthetase, family II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468885|gb|ADX72570.1| prolyl-tRNA synthetase, family II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 603

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 138/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG   L  V A+IREE 
Sbjct: 4   RLSQLFLRTLREDPVDAEVASHRLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEAVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + +  
Sbjct: 64  AAIGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYAAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           LRIF RLGL+ IP+ A +G +GG  S EF+   D GE
Sbjct: 184 LRIFERLGLEVIPVTATAGAMGGSKSEEFLHPTDIGE 220



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 3/160 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ ES+HD +G+
Sbjct: 438 ARGIEMGHIFQLGRKYAEALELKVLDQNGKQVTVTMGSYGVGVTRAVAALAESNHDARGL 497

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP +VAP  + ++ +   +++   A E++ A L   G DV  DD  +   G +F  A+L
Sbjct: 498 VWPRAVAPADVHVVAVGKGEEIFATA-ERLAAELEAAGLDVLLDDRPKVSPGVKFGDAEL 556

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P  + VG   V D  VEIK R +G  E++++++ ++Y
Sbjct: 557 VGVPTILAVGRGLV-DGVVEIKDRRSGEAENVAVDKAVDY 595


>gi|323341796|ref|ZP_08082029.1| proline--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464221|gb|EFY09414.1| proline--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 569

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 141/218 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   ++E+ RD +  S  L++R G I + S G+Y ++PLG K  + +  IIREE
Sbjct: 9   MKLSKSFFYTIREDVRDEDSTSGNLLVRAGYIKKSSSGVYMYMPLGLKVKNKIENIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A EM++PTL   D++V SGR D  G  M +L DR  K  + GPTHEE+     + 
Sbjct: 69  MNAIDAQEMTMPTLIPEDVYVASGRRDIIGTSMFQLDDRFKKPFVLGPTHEELFAQAAQM 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF+ YQ Q KFRDE RPRFG++R REF+MKD+Y+FD   E +  SY+ MF +
Sbjct: 129 KIRSYKDMPFSLYQFQTKFRDEARPRFGLIRVREFVMKDSYTFDADLESADKSYDAMFEA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF R+GL    +RA++G +GG LS EF  + D GE
Sbjct: 189 YKRIFDRVGLDYRIVRADTGIMGGLLSEEFQAVTDIGE 226



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 106/178 (59%), Gaps = 3/178 (1%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV N K  D  P+ K V   ++GIEVG+ F  GTKYS  M   +   + K   V MGSYG
Sbjct: 387 DVSNVKEGDPNPDGKGVLTFSKGIEVGNTFKLGTKYSKAMGLEYLDQNNKLQDVYMGSYG 446

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +AAV+E ++D  GI+WP ++APF+++++ I   ++      + +Y  LS+ G +
Sbjct: 447 IGLGRTLAAVVEQNNDENGIVWPMNLAPFQVAIVVINNKNEEHMAFADDLYQELSQAGLE 506

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           V  DD  ++ G +F   DL+G PL++ VG + V   +VE+K R +G  + +  E+++N
Sbjct: 507 VILDDRKQRPGIKFNDMDLIGVPLRITVG-RDVEHGEVELKERKSGNEQKIKREDILN 563


>gi|71904323|ref|YP_281126.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|114152264|sp|Q48R89|SYP_STRPM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71803418|gb|AAX72771.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 618

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAV 213



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLI 608


>gi|297626631|ref|YP_003688394.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922396|emb|CBL56968.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 588

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 154/264 (58%), Gaps = 19/264 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK F+  L+++P  AEI SH+ ++R G I + + GIYSWLPLG K L  V  I+REE + 
Sbjct: 2   SKLFVRTLRDDPAAAEIPSHRFLVRAGYIRRVAPGIYSWLPLGLKVLQRVENIVREEMDA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+ +P L   + +  S R+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  MGGQEVLLPALLPREPYEISNRWAEYGPNLFRLVDRKGADMLLGPTHEEMFTLLVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+  EG   SY K   +Y+R
Sbjct: 122 SYKDLPVILYQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDEGLDASYLKHRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK------------------ 225
           IF RLG + + ++A +G +GG  S EF+ L++ GE     S                   
Sbjct: 182 IFDRLGFEYVIVKANAGAMGGSASEEFLALSENGEDTFVRSAGGYAANVEAVTVPVPDPI 241

Query: 226 DFMDFPIPSENTDFDDIISLNSIV 249
           DF D P P+   D  D+ +++++V
Sbjct: 242 DFTDAP-PARVVDTPDVPTIDTLV 264



 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 4/181 (2%)

Query: 258 ATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +DV + +  D  P+N      ARG+E+GHIF  G KY+  +       +GK   V MG
Sbjct: 400 GVADVADVREGDPAPDNSGPLTLARGVEMGHIFQLGRKYAESLDLKVLDKNGKLVTVTMG 459

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R V  + ES+ D KG+ WP  VAPF++ ++      ++  +A  +I  +L   
Sbjct: 460 SYGIGVSRAVGMIAESTCDDKGLCWPAEVAPFQVQIVATGKGGEIL-EAATRIAEQLDAA 518

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +F  A+LLG P  ++VG + ++D  VE++ R TG + ++S+EE +
Sbjct: 519 GVRVLLDDRKASPGVKFTDAELLGMPTSLVVG-RGLADGVVELRDRKTGSKREVSVEEAV 577

Query: 436 N 436
           +
Sbjct: 578 D 578


>gi|295426319|ref|ZP_06818978.1| proline--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295063992|gb|EFG54941.1| proline--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 566

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 138/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLMLR G I Q + G+YS+LPLG + L     I+ +E
Sbjct: 1   MRQSKFFMPTLKEAPADAVAESHKLMLRGGYIRQVTAGVYSYLPLGFRVLRKAENIMEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P    A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMMMPHFLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M DAYSF  T E     ++    +
Sbjct: 121 NLKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDAYSFAATREQLDEQFDDEKRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  ++ R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 FENVYRRCGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 3/162 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-HDGKGIIW 340
           IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E    +  GI W
Sbjct: 406 IEVGHIFKLGTYYTKTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAVVEQHLTNHGGIAW 465

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +APF I LI +K ++       EK+   LS    DV +DD  E+ G +F  ADL+G 
Sbjct: 466 PKEIAPFSIHLIQMKMNNDEQTQLAEKLEKELS-AKYDVLYDDRKERPGVKFNDADLVGA 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           P+++ +G K  +D  VE+K        ++S++++ +Y +   
Sbjct: 525 PVRITIGRK-AADGIVEVKRPNDDKATEISVDQLNDYLTKEL 565


>gi|257869604|ref|ZP_05649257.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803768|gb|EEV32590.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 575

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/230 (42%), Positives = 146/230 (63%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  ++REE
Sbjct: 9   MKQSKLFIPTLREIPSDAETLSHQLLVRAGYIRQVAAGIYMYLPLAQRVLEKIKKLMREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM++P L   +LW  +GR   YG+ + +L DRN++  + GPTHEE  T++ +S
Sbjct: 69  LAKIDAVEMTMPVLLPLELWQSTGRDGLYGRSLYQLTDRNEREYVLGPTHEEPFTELIKS 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +Y +   +
Sbjct: 129 EISSYKRLPISLYQIQSKYRDEQRPRFGLIRSREFIMQDGYSFHADESSLDTTYRRYEAA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I  R GL+   +  ++G +GG  S EF+ L+  GE ++ C     D+
Sbjct: 189 YHAILQRCGLEYRAVIGDNGLMGGHDSKEFMALSQIGE-ELICYSTESDY 237



 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ K V    RGIEVGHIF  GTKYS  + AT    +G++  V MG YGIG  R+++
Sbjct: 397 DPSPDGKGVLTFTRGIEVGHIFKLGTKYSERLGATVVDENGQETPVMMGCYGIGVSRLLS 456

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++E   + +GI WP  +AP+ I +I     D      CE++   +  VG +V  DD  E
Sbjct: 457 TIVEQHGNEEGIDWPKEIAPYDIHIIQTTMEDSYQTALCEEVEQAMLAVGYEVLVDDRNE 516

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ +G+K  ++  VEIK + T    ++  EEV
Sbjct: 517 RAGVKFADADLIGCPIRLTIGNK-ATEGIVEIKIKHTNATVEVRKEEV 563


>gi|332670041|ref|YP_004453049.1| prolyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
 gi|332339079|gb|AEE45662.1| prolyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
          Length = 597

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 106/272 (38%), Positives = 152/272 (55%), Gaps = 8/272 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG + L  V A++REE
Sbjct: 3   LRLSTLFVRTLREDPADAEVASHKLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEAVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  +GR+  YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MAAAGAQEVHFPALLPKEPYEATGRWTEYGPNIFRLKDRKGGDYLLAPTHEELFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T +QIQ K+RDE RPR G++R REF+MKDAYSFD+   G   SY     +
Sbjct: 123 LYSSYKDLPLTLFQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLDASYAAQRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F RLGL+ + + A SG +GG  S EF+     GE     S             + +
Sbjct: 183 YQRVFERLGLEYVIVSATSGAMGGSRSEEFLTPTAIGEDTFVRSAG-------GYAANVE 235

Query: 241 DIISLNSIVEQWT-APYAATSDVHNEKLFDSL 271
            + ++      W+ AP A   D  +    D+L
Sbjct: 236 AVTTVAPPALDWSDAPAAHVEDTPDTPTIDTL 267



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++HD +G+
Sbjct: 429 ARGIEIGHIFQLGRKYAQALGLTVLDQNGKSQVVTMGSYGIGVTRVLAALAEANHDDRGL 488

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  VAP  + ++     D    +A E + A+L   G +V +DD  +   G +FA A+L
Sbjct: 489 AWPAHVAPAHVHVVA-TGKDASVFEAAEDVAAQLVARGVEVLYDDRPKVSPGVKFADAEL 547

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G PL V+VG + +++  VE++ R+ G    + + +V+ + + R + 
Sbjct: 548 FGVPLVVVVG-RGLAEGLVEVRPRVGGEPVQVPVADVVEHVAGRVAE 593


>gi|213024165|ref|ZP_03338612.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 194

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 123/164 (75%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           REE N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+
Sbjct: 1   REEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDL 60

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R+ + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M
Sbjct: 61  VRNELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAM 120

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           + +Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +
Sbjct: 121 YAAYSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDI 164


>gi|25028444|ref|NP_738498.1| prolyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|259507503|ref|ZP_05750403.1| proline--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|81846817|sp|Q8FP97|SYP_COREF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23493729|dbj|BAC18698.1| putative prolyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|259164888|gb|EEW49442.1| proline--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 588

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/225 (43%), Positives = 139/225 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG +AL N+  ++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGVYSWLPLGLRALRNIEQVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPGLLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFASTVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEESYARHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            RIF RLG++ +  +A SG +GG  S EF+ ++  GE     + D
Sbjct: 184 QRIFDRLGIEYVICKATSGAMGGSASEEFLAVSANGEDTFVRATD 228



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 6/171 (3%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE +     ARGIE+GHIF  G KY+          +GK     MGSYGIG  R++A
Sbjct: 410 DPAPEGQGTLTLARGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGVSRLLA 469

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD  G+ W  +VAP+++ ++     D    +A E+    LS+ G DV +DD  +
Sbjct: 470 VLAEQRHDEAGLNWSPAVAPYQVHVVAAN-KDAAAIEAAERYATELSQAGIDVLFDDRPK 528

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              G +F  A+LLG P  +I+G  + +D  VE++ R  G + ++ ++E + 
Sbjct: 529 VSPGVKFKDAELLGMPFALILGRGY-ADGTVELRVR-GGEKTELPVDEAVE 577


>gi|227833360|ref|YP_002835067.1| Prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184346|ref|ZP_06043767.1| prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|254782894|sp|C3PH25|SYP_CORA7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227454376|gb|ACP33129.1| Prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 589

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG +A+  +  +IR+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRAMRKIEDVIRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  EM  P L   + + ES R+  YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  NAIGGQEMLFPALLPREPYEESNRWTEYGDNLFRLKDRKGADMLLGPTHEEMFTTAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYARHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             IF RL +     +A SG +GG  S EF+ +++ GE
Sbjct: 184 QNIFDRLEIDYAICKATSGAMGGSASEEFLAVSEVGE 220



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A + E  HD KG+ 
Sbjct: 427 RGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSYGIGVTRMLAVLAEQRHDEKGLN 486

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP +VAP+++  + +   D    +A +K+   L + G +V +DD  +   G +F  A+LL
Sbjct: 487 WPVAVAPYQVH-VAVANKDAAALEAGQKLVEDLDRAGIEVLYDDRPKVSPGVKFKDAELL 545

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           G P   I+G  F +D  +E++ R    RE
Sbjct: 546 GMPFIAILGRAF-ADGIIELRIRGGETRE 573


>gi|313829616|gb|EFS67330.1| prolyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
          Length = 581

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 137/215 (63%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F    +E P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE   
Sbjct: 2   SQLFARPRREAPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +    
Sbjct: 62  IGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+R
Sbjct: 122 SYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG     ++A SGP+GG  S EF+ +A  GE
Sbjct: 182 IFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGE 216



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E + D KG+
Sbjct: 418 ARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIAEGTCDEKGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAP+ + ++      ++  D   +I + L++ G +V  DD     G +FA +++L
Sbjct: 478 CWPREVAPYDVQVLATGKGTEIL-DEATRIASELAEAGLEVLLDDRKASPGVKFADSEIL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 537 GMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|312864390|ref|ZP_07724623.1| proline--tRNA ligase [Streptococcus downei F0415]
 gi|311100111|gb|EFQ58322.1| proline--tRNA ligase [Streptococcus downei F0415]
          Length = 633

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 136/213 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q + G+YS+LPL  + ++    I+REE
Sbjct: 15  MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVTAGVYSYLPLANRVIEKFKTIMREE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 75  FDKIGAVEMLAPALLTADLWKESGRYETYGDDLYKLKNRDQAEFILGPTHEETFTALVRD 134

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 135 SIKSYKQLPMNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDEAYEAYRQA 194

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 195 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAV 227



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 455 ARGIEIGHIFKLGTRYSDSMGANILDENGRSIPIIMGCYGIGVSRILSAVIEQHARLFVN 514

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQV +D    + ++L K G  V  DD  
Sbjct: 515 KTPKGAYRFSWGINFPKELAPFDVHLITVNTKDQVAQDLTANLESQLVKAGYQVLTDDRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 575 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 612


>gi|222152444|ref|YP_002561619.1| prolyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254782919|sp|B9DTD1|SYP_STRU0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222113255|emb|CAR40772.1| prolyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 618

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 137/214 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMMRAGYVRQVSAGIYAYLPLANRTIEKLKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRESSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R GL+   +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRSGLEFKGIIGDGGAMGGKDSQEFMAIT 214



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  + A     +GK   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSLGANILDENGKSIPIVMGCYGIGVSRILSAVIEQHARLFVS 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF I LI +   D+  +   +K+   L   G +V  DD  
Sbjct: 500 KTPKGEYRYSWGINFPKELAPFDIHLITVNTKDEEAQTLTDKLEKELMTKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P+++ VG K  S+  VEIK + +G   +++ E VI
Sbjct: 560 ERVGSKFSDSDLIGLPIRITVGKK-ASEGIVEIKIKASGDSIEVNAENVI 608


>gi|256824985|ref|YP_003148945.1| prolyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688378|gb|ACV06180.1| prolyl-tRNA synthetase, family II [Kytococcus sedentarius DSM
           20547]
          Length = 596

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 139/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P DAE+  H+L++R G + + + GIY+WLPLG K ++ V  I+REE
Sbjct: 3   MRMSTLFLRTLREDPTDAELPGHRLLVRAGYVRRVAPGIYTWLPLGLKVMEKVKGIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E++ P+L   + +  S R+  YG ++ RL DR    M+ GPTHEE+ T   + 
Sbjct: 63  MEAIGDQEIAFPSLLPREPYEASNRWTEYGDDLFRLTDRKGADMLLGPTHEEMFTLAVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   +QI  K+RDELRPR GV+R REF MKDAYSFD+   G + +Y +   +
Sbjct: 123 LYTSYKDLPLGLFQILPKYRDELRPRAGVLRGREFTMKDAYSFDVDEAGLEAAYQRHRKA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y R+F RLG + + + A+SG +GG  S EF+ + D+GE
Sbjct: 183 YTRVFDRLGFEYVAVHADSGAMGGSASEEFLAVMDSGE 220



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 3/147 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+E+GHIF  GTKY+  +       +GK   VQMGSYGIG  R V  V E+ HD  G+
Sbjct: 431 ARGVEMGHIFQLGTKYAEALGLKVLDQNGKLVTVQMGSYGIGITRAVGVVAETHHDEIGL 490

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP  ++P  + ++     D    +  E++ A L + G  V  DD  +   G +F  A+L
Sbjct: 491 VWPRELSPADVHVVAT-GKDAAVLEKAEELTAALEQQGLTVLLDDRPKVSPGVKFKDAEL 549

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G P  ++VG K +++ +VEIK R  G
Sbjct: 550 IGVPTILVVG-KGLAEGEVEIKDRAAG 575


>gi|228476457|ref|ZP_04061147.1| prolyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228251878|gb|EEK10924.1| prolyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 621

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +  L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 2   MKQSKMLISTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 62  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 122 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 182 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAV 214



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 441 ARGIEIGHIFKLGTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVN 500

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +AP+ + LI +   D+      E++ A L   G DV  DD  
Sbjct: 501 KTPKGQYRYAWGINFPKELAPYDVHLITVNTKDEEANALTERLEAALMAEGYDVLTDDRN 560

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + TG
Sbjct: 561 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVKIKATG 598


>gi|302864555|ref|YP_003833192.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302567414|gb|ADL43616.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 589

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 162/304 (53%), Gaps = 17/304 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD + AI+R+E
Sbjct: 3   LRMSTLLLRTLREDPADAEVPSHRLLLRAGYVRRAAPGGYTWLPLGKLVLDRITAIVRDE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + + 
Sbjct: 63  MTGIGDQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRKGAEHLLAPTHEELAALLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR+ P T +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +
Sbjct: 123 LFTSYRDFPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDF 239
           Y R+F RLGL    + A SG +GG  S EF+     GE T V C             T  
Sbjct: 183 YERVFTRLGLDFTTVHAMSGAMGGSASEEFLAATPVGEDTFVGC-------------TAC 229

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D   +  ++V +  AP A   D +        PE   ++A  +E+      G +     +
Sbjct: 230 DYAANTEAVVTR--APAAGDPDAYPPAEVHDTPETPTIAAL-VELAEARELGGRTGWTAA 286

Query: 300 ATFK 303
            T K
Sbjct: 287 DTLK 290



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G +Y+   +    G +GK     MG YGIG  R VAAV E  HD +G++
Sbjct: 421 RGIEIGHIFQLGRRYTDAFAVDVLGPEGKPVRPTMGCYGIGVSRAVAAVAEQHHDDRGLV 480

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP +VAP  + LI      Q+  DA   +  RL+  G  V  DD      G +F  A+L+
Sbjct: 481 WPAAVAPCDVHLIAAGKGPQL--DAALDLGGRLAAAGLRVLVDDRTHVSAGVKFTDAELI 538

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  V+VG +  ++  VE++ R TG R ++ +E ++ 
Sbjct: 539 GIPRAVVVGRRL-AEGYVELRDRATGERTELPVEAIVE 575


>gi|227874914|ref|ZP_03993066.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|269976484|ref|ZP_06183469.1| prolyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|306818238|ref|ZP_07451968.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307701739|ref|ZP_07638753.1| proline--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|227844491|gb|EEJ54648.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|269935285|gb|EEZ91834.1| prolyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|304648977|gb|EFM46272.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307612997|gb|EFN92252.1| proline--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 633

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 169/319 (52%), Gaps = 38/319 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S YF   L+E+P +AE+ SHKL++R G I + + GIY+WLPLG + L N+  ++REE 
Sbjct: 4   RMSSYFARTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLRVLRNIENVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L   + +  + R++ +G  + +L DR     + GPTHEE+ T I +  
Sbjct: 64  DRIGGQELQFPVLLPREPYEATNRWEEFGSSLFKLQDRKGGDYLLGPTHEEMFTVIVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQI+ K+RDE RPR GV+R REF+MKD YSFDLT EG  HSY     +Y
Sbjct: 124 FSSYKDLPILLYQIKEKYRDEARPRAGVIRGREFVMKDLYSFDLTDEGLAHSYALNRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE------------------TQVFC 223
            R++ RLGL+    +A+SG +GG  S EF+   D GE                  T V  
Sbjct: 184 RRVYTRLGLEFAICQAQSGAMGGSASEEFLFPCDIGEDTFVRSPGGYAANAEAVTTAVPE 243

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQ-----------WTAP--------YAATSDVHN 264
           +  F D P P E     D  ++ S+V +           W A          A   D H+
Sbjct: 244 ALPFDDAPAP-EVLPTPDSTTIESLVAKANELYPRKDRPWRAEDTLKNVVVVAEEPDGHS 302

Query: 265 EKLFDSLPENKRVSARGIE 283
           E +   +P N+ V  + +E
Sbjct: 303 EVIVVGVPGNREVDMKRLE 321



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  R+VAA+ E++HD KG+
Sbjct: 433 ARGIEIGHIFALGRKYAKALGLTVLDENGKAQVVTMGSYGIGVSRLVAAIAENTHDDKGL 492

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP +VAPF++ ++      QV   A EK+   L   G  V +DD  +   G +F  A+L
Sbjct: 493 VWPVNVAPFQVHVLATGKDPQVFA-AAEKLARELEAAGIPVLYDDRAKASAGVKFKDAEL 551

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G P  ++VG K +++  VEI+ R  G   D ++E  +
Sbjct: 552 MGMPYLLVVG-KGLANGTVEIRDRRAGNTLDCTVEAAV 588


>gi|315500848|ref|YP_004079735.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315407467|gb|ADU05584.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 589

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 162/304 (53%), Gaps = 17/304 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD + AI+R+E
Sbjct: 3   LRMSTLLLRTLREDPADAEVPSHRLLLRAGYVRRAAPGGYTWLPLGKLVLDRITAIVRDE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + + 
Sbjct: 63  MTGIGDQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRKGAEHLLAPTHEELAALLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR+ P T +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +
Sbjct: 123 LFTSYRDFPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDF 239
           Y R+F RLGL    + A SG +GG  S EF+     GE T V C             T  
Sbjct: 183 YERVFTRLGLDFTTVHAMSGAMGGSASEEFLAATPVGEDTFVGC-------------TAC 229

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D   +  ++V +  AP A   D +        PE   ++A  +E+      G +     +
Sbjct: 230 DYAANTEAVVTR--APAAGDPDAYPPAEVHDTPETPTIAAL-VELAEARELGGRTGWTAA 286

Query: 300 ATFK 303
            T K
Sbjct: 287 DTLK 290



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G +Y+   +    G +GK     MG YGIG  R VAAV E  HD +G++
Sbjct: 421 RGIEIGHIFQLGRRYTDAFAVDVLGPEGKPVRPTMGCYGIGVSRAVAAVAEQHHDDRGLV 480

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP +VAP  + LI      Q+  DA   +  RL+  G  V  DD      G +F  A+L+
Sbjct: 481 WPAAVAPCDVHLIAAGKGPQL--DAALDLGGRLAAAGLRVLVDDRTHVSAGVKFTDAELI 538

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  V+VG +  ++  VE++ R TG R ++ +E ++ 
Sbjct: 539 GIPRAVVVGRRL-AEGYVELRDRATGERTELPVEAIVE 575


>gi|324998197|ref|ZP_08119309.1| prolyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 577

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 135/215 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG K L  +  ++REE + 
Sbjct: 2   SSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLKVLRRIENVVREEMDA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L   + +  + R+  YG  + R+ DR     + GPTHEE+ T   +    
Sbjct: 62  MGGQEIQFPALLPREPYEATNRWTEYGPALFRIQDRKGGDYLLGPTHEELFTLAVKGEYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY K   +Y+R
Sbjct: 122 SYKDYPVVLYQIQTKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLSESYGKHRDTYIR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RL LK + + A SG +GG  S EF+  ++TGE
Sbjct: 182 IFDRLALKYVIVAATSGAMGGSASEEFLAESETGE 216



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 2/152 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIE+GHIF  G KY+   S    G D K   + MGSYGIG  R+VAA+ E  HD  G
Sbjct: 412 AARGIEIGHIFQLGRKYADAFSLDALGPDSKPVRITMGSYGIGVSRLVAAIAEQCHDDSG 471

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++WP SVAPF + ++ +        +  E + A L   G  V  DD     G +FA A+L
Sbjct: 472 LVWPRSVAPFDVHVV-VAGKSAELLEGGEVLAAELEAEGLSVILDDRKASPGVKFADAEL 530

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +G P  V+VG + ++D K+E+K R TG R ++
Sbjct: 531 VGVPTIVVVG-RGLADGKIELKDRATGERTEI 561


>gi|315635814|ref|ZP_07891076.1| proline--tRNA ligase [Arcobacter butzleri JV22]
 gi|315479793|gb|EFU70464.1| proline--tRNA ligase [Arcobacter butzleri JV22]
          Length = 568

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 139/224 (62%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P  +E P DA + SH+ ++R G I Q   GIY ++PLG+  L+ +  I++EE
Sbjct: 1   MKFSKMFIPTTKETPNDATLPSHQYLVRGGFIAQTGAGIYDFMPLGKIVLEKIRTIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+    +    LW ESGR  + G EMLR  DR +   +  PT+EE + ++ ++
Sbjct: 61  MDEAGANEVQFGFVTPLTLWQESGRATTMGAEMLRFKDRKNGEFVLSPTNEEAVVNMVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQI  KFRDE RPRFG+MR REFLMKD YSF  + E     +N M  +
Sbjct: 121 RITSYKDLPLHLYQINTKFRDEARPRFGLMRGREFLMKDGYSFHSSEEDLVREFNLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y +I+ +LGL    + A+SG IGG  S EF V+AD+GE T V C
Sbjct: 181 YKKIYTKLGLDFRVVAADSGAIGGSGSKEFHVIADSGEDTLVVC 224



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 2/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE GHIF  GTKYS  M+A F   +GK     MG YGIG  R+VAAVIE +HD KG +
Sbjct: 405 KGIEAGHIFQLGTKYSSAMNANFLDENGKAKPFIMGCYGIGVSRLVAAVIEQNHDDKGCV 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           W  + APF + +I   +  +      E++Y++L + G     DD +  + G + +  +LL
Sbjct: 465 WTKATAPFMVDIIVSNSKKEEEAKVGEELYSKLKQAGISTILDDRINARFGFKMSDFELL 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           GFP  V++G K + D  VEI  R T  + D+ ++EVI+
Sbjct: 525 GFPYAVVIGKK-LEDGLVEIVDRKTLEKIDLKVDEVIS 561


>gi|227488647|ref|ZP_03918963.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227543250|ref|ZP_03973299.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091541|gb|EEI26853.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181059|gb|EEI62031.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 588

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/225 (43%), Positives = 137/225 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGVYTWLPLGLRVLRKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  NAIGGQELRFPALLPREPYELTQRWTEYGNSLFRLKDRKGNDMLLGPTHEEMFTQVVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   SY     +Y
Sbjct: 124 YSSYKDFPVLLYQIQTKYRDEERPRAGILRGREFVMKDSYSFNMDDEGLDESYQNHRQAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             IF+RLGL  +  +A SG +GG  S EF+ +++ GE     S D
Sbjct: 184 QNIFNRLGLDYVICKATSGAMGGSASEEFLAVSENGEDTFVQSSD 228



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 6/161 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  M       +GK     MGSYGIG  R +A ++E S+D KG++
Sbjct: 422 RGIEIGHIFQLGRKYTTAMDVQILDENGKRSVPTMGSYGIGVSRAMAVIVEQSYDDKGLV 481

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP+ + ++ +   D+  +DA EK+ A L   G +V +DD  +   G +F  A+LL
Sbjct: 482 WPACVAPYHVHVV-VANKDKEAQDAAEKLVADLDAAGIEVLFDDRPKVSPGVKFKDAELL 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR---LTGIREDMSLEEVIN 436
           G P  V++G  F  D ++E + R    + I  D +LE ++ 
Sbjct: 541 GIPYTVVLGRAF-KDGEIEFRVRAGETSTIPVDGALEHIVT 580


>gi|119963667|ref|YP_947320.1| prolyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|152074745|sp|A1R508|SYP_ARTAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119950526|gb|ABM09437.1| prolyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 603

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/271 (40%), Positives = 154/271 (56%), Gaps = 6/271 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S+ FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG   L  V  IIR+E
Sbjct: 3   LRLSQLFLRTLREDPVDAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEDIIRQE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MSAIGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +
Sbjct: 123 LYSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDIDDAGLDASYAAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF RLGL+ IP+ A +G +GG  S EF+   + GE     S       + +  T   
Sbjct: 183 YLKIFERLGLEVIPVAATAGAMGGSKSEEFLFPTEIGEDTFVRSAGGYYANVEAVTTVVP 242

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           D I  ++      AP A   D  N    D+L
Sbjct: 243 DEIDFSN------APAAEVLDTPNTPTIDTL 267



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 98/161 (60%), Gaps = 3/161 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E+++D +G
Sbjct: 437 TARGIEMGHIFQLGRKYAEALDLKVLDQNGKQQVVTMGSYGVGVTRAVAALAEANNDDRG 496

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD 396
           ++WP SVAP  + ++ +   D++  +A EK+   L   G DV +DD  +   G +F  A+
Sbjct: 497 LVWPRSVAPADVHVVAVGRGDEIF-EAAEKLSLELEAAGLDVIFDDRPKVSPGVKFGDAE 555

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           L+G P  + VG   V D  VEIK R +G  E++S+++ ++Y
Sbjct: 556 LVGVPTILAVGRGLV-DGVVEIKDRRSGEAENISVDKAVDY 595


>gi|225867815|ref|YP_002743763.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259511619|sp|C0MFA1|SYP_STRS7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225701091|emb|CAW97925.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 618

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 16/183 (8%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+   K  ++ P+   V   ARGIE+GHIF  GT+YS  M+A     +G+   + M
Sbjct: 416 AEYADIREVKEGETSPDGHGVLQFARGIEIGHIFKLGTRYSDSMAANILDENGRAVPIVM 475

Query: 315 GSYGIGAMRVVAAVIES------SHDGKG-------IIWPDSVAPFKISLINIKAHDQVC 361
           G YGIG  R+++AVIE       S   KG       I +P  +APF + LI +   DQ  
Sbjct: 476 GCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQEA 535

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D  EK+ A L   G DV  DD  E++GS+F+ +DL+G P++V +G K  ++  VEIK +
Sbjct: 536 QDLTEKVEASLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTIGKK-AAEGIVEIKIK 594

Query: 422 LTG 424
            TG
Sbjct: 595 ATG 597


>gi|330464914|ref|YP_004402657.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328807885|gb|AEB42057.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 583

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/225 (45%), Positives = 139/225 (61%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S   L  L+++P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD V+ I+R E
Sbjct: 3   LRMSTTLLRTLRDDPADAEVPSHRLLLRAGYLRRAAPGGYTWLPLGKLVLDRVSEIVRAE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + + 
Sbjct: 63  MAAIGGQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRRGAEHLLAPTHEEMAALLVKE 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR+LP T +QIQ KFRDE RPR G++R REFLMKDAYSFDL  EG + +Y +   +
Sbjct: 123 LFTSYRDLPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDDEGLRAAYGRHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y +IF RLGL    + A SG +GG  S EF+  A  GE T V C+
Sbjct: 183 YQKIFDRLGLDYTVVHAVSGAMGGSASEEFLATAAVGEDTYVGCT 227



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 4/157 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G +Y+   +    G  GK   + MG YGIG  R VAA+ E  HD +G++
Sbjct: 421 RGIEIGHIFQLGRRYTDAFAVDVLGPQGKPVRLTMGCYGIGVSRAVAAIAEQHHDERGLV 480

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP SVAP  + L+      Q+  DA   + A+L+  G  V  DD +G   G +F  A+L+
Sbjct: 481 WPTSVAPCDVHLVAAGKGPQL--DAAVDLGAQLAAAGLRVLVDDRVGVSAGVKFTDAELI 538

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+VG +  +D  VE++ R TG R ++SL +++
Sbjct: 539 GIPRTVVVGRRL-ADGYVELRDRATGERVELSLPDLL 574


>gi|225871275|ref|YP_002747222.1| prolyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|254782916|sp|C0M9E6|SYP_STRE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225700679|emb|CAW95268.1| prolyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 618

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 16/183 (8%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+   K  ++ P+   V   ARGIE+GHIF  GT+YS  M+A     +G+   + M
Sbjct: 416 AEYADIREVKEGETSPDRHGVLQFARGIEIGHIFKLGTRYSDSMAANILDENGRAVPIVM 475

Query: 315 GSYGIGAMRVVAAVIES------SHDGKG-------IIWPDSVAPFKISLINIKAHDQVC 361
           G YGIG  R+++AVIE       S   KG       I +P  +APF + LI +   DQ  
Sbjct: 476 GCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQEA 535

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D  E++ A L   G DV  DD  E++GS+F+ +DL+G P++V +G K  ++  VEIK +
Sbjct: 536 QDLTERVEASLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTIGKK-AAEGIVEIKIK 594

Query: 422 LTG 424
            TG
Sbjct: 595 ATG 597


>gi|256379843|ref|YP_003103503.1| prolyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255924146|gb|ACU39657.1| prolyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 581

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 135/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G YSWLPLG + L N+  ++REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGGYSWLPLGLRVLRNIERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQEIQFPALLPKEPYEATNRWTEYGPNIFRLKDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDLT EG   +Y +   +Y
Sbjct: 124 YSSYKDYPVALYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLTDEGLAEAYQRHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           ++IF RLG+  + + A SG +GG  S EF+ +A  GE
Sbjct: 184 IKIFDRLGMDYVIVSATSGAMGGSASEEFLAVAPNGE 220



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 102/182 (56%), Gaps = 4/182 (2%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T DV   +  D  P+ K V  +ARGIE+GHIF  G KY+   S    G DGK   + MG
Sbjct: 395 GTIDVAEVREGDPSPDGKGVLVAARGIEIGHIFQLGRKYADAFSLDALGPDGKPVRITMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VAA+ E SHD +G+IWP +VAP  + ++ +   D    +  EK+   LS  
Sbjct: 455 SYGIGVSRLVAAIAEQSHDDRGLIWPRNVAPADVHVV-VAGKDATLLEGGEKLAGELSSA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +FA A+L+G P  ++VG    S   VE+K R +G R ++ ++E +
Sbjct: 514 GLSVLLDDRKASPGVKFADAELVGVPTILVVGRGLAS-GLVEVKDRRSGERVEVPVDEAV 572

Query: 436 NY 437
            +
Sbjct: 573 QH 574


>gi|50550793|ref|XP_502869.1| YALI0D15620p [Yarrowia lipolytica]
 gi|49648737|emb|CAG81057.1| YALI0D15620p [Yarrowia lipolytica]
          Length = 445

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 219/433 (50%), Gaps = 48/433 (11%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L+  TG +   S G+ + LPLG +    +  IIR E +  G  E+S+      DLW ++G
Sbjct: 25  LLAVTGYVSYPSSGLANLLPLGLRVQRKIENIIRSELDSIGCAEVSLSNFSDPDLWRKTG 84

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R ++   E+ R+ D ++   I  PTHEE +T++    I S ++LP  +YQI  K+R+E R
Sbjct: 85  RINN--GELFRVNDGSEDPPIIAPTHEEEITNLIAQKISSPKDLPILWYQIGKKYRNEAR 142

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R +EF MKD YSFD+    +  SY+ +  +Y +IF +LG+    + A+SG IGG
Sbjct: 143 PRGGLLRGKEFTMKDLYSFDVDEPRALESYDLVRKAYDQIFGKLGVPVKSVAADSGAIGG 202

Query: 205 DLSHEFIVLADTGE-TQVFCSK-DFMDFPIPSENTDFDD---IISLNSIVEQWTAPYAAT 259
             SHE+ V+  +GE T V CS  D+      +E    D       +N ++    + +A  
Sbjct: 203 SHSHEYHVIDASGEDTLVTCSSCDYSANIEVAERAAGDSETICTEVNGVLVTHESSHAVN 262

Query: 260 SDV-----------------------HN---EKLFDSLPENKRVS---ARGIEVGHIFYF 290
             +                       HN    K  DS P N   S   +  IEVGH FY 
Sbjct: 263 PRLVDRALSSYGHDAYKISMLRDGVSHNLTTPKEGDSCP-NCTSSLKFSNAIEVGHTFYL 321

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-I 349
           GTKYS  +S  FK ++ K     MG YGIG  R+VAA+ E S D  G+ WP +VAP++ +
Sbjct: 322 GTKYSKSLSCDFKNSENKLTPAFMGCYGIGITRLVAAIAEVSRDQHGLKWPSNVAPYETV 381

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGS 408
            ++   A +    D   ++ A L     D   DD  ++ IG +   A L+GFP QV+V  
Sbjct: 382 VILGGGATESTLLDKASELGALLQ----DAVIDDRPKRSIGWKINEAKLMGFP-QVVV-- 434

Query: 409 KFVSDSKVEIKHR 421
             V    +E+ HR
Sbjct: 435 --VKKDGIEVIHR 445


>gi|251781674|ref|YP_002995976.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390303|dbj|BAH80762.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 618

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 135/213 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQ  +D    + A L   G +V  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQAAQDLTATLEADLMAKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  +D  VEIK + TG   +++ + +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEIKIKATGDSIEVTADNLI 608


>gi|323126466|gb|ADX23763.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 618

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 135/213 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQ  +D    + A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQAAQDLTATLEADLMANGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  +D  VEIK + TG   +++ + +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEIKIKATGDSIEVTADNLI 608


>gi|289674658|ref|ZP_06495548.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 172

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 122/163 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSF 163


>gi|72383677|ref|YP_293032.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|114152229|sp|Q46GR7|SYP_PROMT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72003527|gb|AAZ59329.1| prolyl-tRNA synthetase, bacterial [Prochlorococcus marinus str.
           NATL2A]
          Length = 596

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/229 (44%), Positives = 145/229 (63%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +A+I SH+L++R G + + + GIY+++PL  K L  + +I+ EE
Sbjct: 1   MRVSRLMLNTLRDVPAEADIISHQLLVRGGYVKRLTGGIYAYMPLLWKVLKKITSIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G ++  +P LQ +++W  SGR+ SY K    M  L DR  K +  GPTHEEV+T I
Sbjct: 61  LSTKGCLQTLLPQLQPSEIWERSGRWKSYTKGEGIMFSLKDRQGKELGLGPTHEEVITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF       + +Y+ M
Sbjct: 121 ISQTIHSYKQLPINIFQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANENDLQSTYSDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  IF + GL  + + A+SG IGG  S EF+V A++GE  +  S D
Sbjct: 181 RNAYENIFTKCGLDFVCVDADSGAIGGAASQEFMVTAESGEDLILISSD 229



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 132/276 (47%), Gaps = 29/276 (10%)

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-----CSKDFMDF----PIPSE 235
             + G+ +IP     G IG DLS   +  +   E +        +KD   F     I  E
Sbjct: 335 MQKQGISNIPF----GFIGPDLSDNLLAQSKAWEKKFIRIADNSAKDLKSFICGNNIKDE 390

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGT 292
           +  F +   +N++            D+   K  D    +K       RGIE+GHIF  GT
Sbjct: 391 HKIFYNWNLINTV--------QMICDIRKAKPGDRCIHDKTQKLQECRGIEIGHIFQLGT 442

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI--S 350
           KYS  ++ATF    G + +  MG YGIG  R+  A +E +HD  GIIWP S+APF +   
Sbjct: 443 KYSKSLNATFTNEKGVEDHFWMGCYGIGISRLAQAAVEQNHDDLGIIWPTSIAPFTVIII 502

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           + NIK +DQ C    E IY +L +   DV  DD  E+ G +F  ADL+G P +++ G + 
Sbjct: 503 IANIKNNDQKC--LAEDIYQKLIQDRVDVLLDDRDERAGIKFKDADLIGIPWRIVAGRE- 559

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            S   VE+ +R T I E + L  V    S  F+  +
Sbjct: 560 ASSGLVELHNRKTKITELLDLNSVFKKLSEEFNTEK 595


>gi|297571190|ref|YP_003696964.1| prolyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931537|gb|ADH92345.1| prolyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 595

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 137/215 (63%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+++P DAE+ SHKL++R G + + + GIY+WLPLG K L  V A++REE + 
Sbjct: 2   SELFVRTLRDDPADAEVRSHKLLVRAGYVRRAAPGIYTWLPLGLKVLRKVEAVVREEMDA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G+ EM  P L   + +  + R++ YG  + RL DR +   +  PTHEE+ T   +    
Sbjct: 62  AGSQEMHFPALLPREPYEATNRWEEYGPNLFRLKDRRENDYLLAPTHEEMFTLAVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP + YQIQ K+RDE RPR G++R+REF+MKDAYSFD+   G  HSY  M  +Y R
Sbjct: 122 SYKDLPVSLYQIQHKYRDEARPRAGIIRTREFIMKDAYSFDIDDSGLDHSYETMRNAYQR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLG+  +   A+SG +GG  S EF+     GE
Sbjct: 182 IFTRLGVPFVICSAQSGAMGGSRSEEFLAPCAIGE 216



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 3/146 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +       +GK   V MGSYGIG  RV+AA+ E + D KG+ 
Sbjct: 430 RGIEIGHIFQLGRKYAKALDLKVLDQNGKAVVVTMGSYGIGVSRVMAALAELNSDDKGLA 489

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP  +AP  + +I     D V  D   +  A LS+ G +V +DD +    G +FA  +L+
Sbjct: 490 WPAHLAPATVHVIATGKDDAVF-DTASRFAAELSEQGVEVIYDDRVKVSAGVKFADYELI 548

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P  ++VG + + D KVEI+ R +G
Sbjct: 549 GVPFAIVVG-RGLKDGKVEIRDRRSG 573


>gi|322411037|gb|EFY01945.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 618

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 135/213 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDDNGRAVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQ  +D    + A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQAAQDLTATLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  +D  VEIK + TG   +++ + +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEIKIKATGDSVEVTADNLI 608


>gi|319745866|gb|EFV98156.1| proline--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 617

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 136/214 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R GL    +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVT 214



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+ + + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  
Sbjct: 500 KTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + +G
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVKIKASG 597


>gi|157150969|ref|YP_001451117.1| prolyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083519|sp|A8AZA7|SYP_STRGC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157075763|gb|ABV10446.1| prolyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 616

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L+LR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGDDLFKLKNREGSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVTYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  +    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSEIDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+AT    +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNATVLDENGRAVPLVMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      +KI   L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEESLALTDKIEESLVGAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P++V VG K  ++  VE+K + +G
Sbjct: 560 ERVGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKASG 597


>gi|220912189|ref|YP_002487498.1| prolyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|219859067|gb|ACL39409.1| prolyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 599

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 161/301 (53%), Gaps = 29/301 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ FL  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG   L  V  +IREE   
Sbjct: 2   SQLFLRTLREDPVDAEVASHKLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEQVIREEMAA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + +    
Sbjct: 62  IGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +YL+
Sbjct: 122 SYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYAAHRSAYLK 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE------------------TQVFCSK 225
           IF RLGL  +P+ A +G +GG  S EF+   + GE                  T V    
Sbjct: 182 IFERLGLDVVPVAATAGAMGGSRSEEFLFPTEIGEDTFVRSAAGYAANVEAVTTVVPADI 241

Query: 226 DFMDFPIPSENTDFDDIISLNSIV----------EQWTAPYAATSDVHNEKLFDSLPENK 275
           DF   P  +E  D  D  ++ ++V          E    P+ A   + N  L  +LP  +
Sbjct: 242 DFTGAPA-AEVLDTPDTPTIETLVNASNQIAPRAEADGGPWTAADTLKNVVLAVTLPTGE 300

Query: 276 R 276
           R
Sbjct: 301 R 301



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 3/169 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E++HD KG
Sbjct: 433 TARGIEMGHIFQLGRKYAAALDLKVLDQNGKQVTVTMGSYGVGVTRAVAALAEANHDAKG 492

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVAD 396
           + WP +VAP  + ++ +   + +   A E++   L   G DV +DD      G +F  A+
Sbjct: 493 LTWPRAVAPADVHVVAVGKGEDIFA-AAEQLSVGLEAAGLDVIYDDRFKVSPGVKFGDAE 551

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           LLG P  + VG   V D  VEIK R TG  E++++++ ++Y  +   N+
Sbjct: 552 LLGVPTILAVGRGLV-DGVVEIKDRRTGEAENVAVDKAVDYVVNAVRNS 599


>gi|77405643|ref|ZP_00782731.1| prolyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|161486742|ref|YP_330466.2| prolyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|114152259|sp|Q3JZ37|SYP_STRA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77175716|gb|EAO78497.1| prolyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 617

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 136/214 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R GL    +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVT 214



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           +RGIE+GHIF  GT+YS  M A     +G+ + + MG YGIG  R+++AVIE        
Sbjct: 440 SRGIEIGHIFKLGTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  
Sbjct: 500 KTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + +G
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVKIKASG 597


>gi|22538051|ref|NP_688902.1| prolyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76798737|ref|ZP_00780956.1| prolyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77414704|ref|ZP_00790836.1| prolyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|81845373|sp|Q8DXD8|SYP_STRA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22534955|gb|AAN00775.1|AE014278_2 prolyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76585916|gb|EAO62455.1| prolyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77159248|gb|EAO70427.1| prolyl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 617

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 136/214 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R GL    +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVT 214



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+ + + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  
Sbjct: 500 KTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + +G
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVKIKASG 597


>gi|262283493|ref|ZP_06061259.1| prolyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262260984|gb|EEY79684.1| prolyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 616

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 137/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L+LR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGDDLFKLKNREGSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVTYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y +IF R  +    +  + G +GG  S EF+ +
Sbjct: 181 YEKIFTRSEIDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+AT    +G+   + MG YGIG  R+++AV+E        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMNATVLDENGRAVPLVMGCYGIGVSRLLSAVMEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+      +KI   L   G +V  DD  
Sbjct: 500 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEESLALTDKIEESLVGAGYEVLVDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P++V VG K  ++  VE+K + +G
Sbjct: 560 ERVGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKASG 597


>gi|77412297|ref|ZP_00788612.1| prolyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77161644|gb|EAO72640.1| prolyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 617

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 136/214 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R GL    +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVT 214



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+ + + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  
Sbjct: 500 KTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + +G
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVKIKASG 597


>gi|308235415|ref|ZP_07666152.1| prolyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
 gi|311114822|ref|YP_003986043.1| proline--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946316|gb|ADP39020.1| proline--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 602

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 139/215 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIREE N 
Sbjct: 2   SQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIREEING 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEEV T + +    
Sbjct: 62  IGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHEADYLLAPTHEEVFTLLVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+M+DAYSF +  +G K +Y +   +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDAYSFSIDEDGLKSAYVEERAAYAR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLG+K + + A SGP+GG  S EF+     GE
Sbjct: 182 IFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMAIGE 216



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 436 RGVEIGQVFQLGLKYSKALGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLA 495

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     DQV  DA EK+   LSK G +V +DD  +   G +F  A+L+
Sbjct: 496 WPMAIAPAQVHVVAT-GKDQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELV 554

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +EI+ R
Sbjct: 555 GVPLIAVAGRDTVNNGTIEIRDR 577


>gi|111658322|ref|ZP_01409011.1| hypothetical protein SpneT_02000512 [Streptococcus pneumoniae
           TIGR4]
          Length = 612

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 133/206 (64%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E  + GA+
Sbjct: 3   IPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQEFEKIGAV 62

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R  +KSY+ 
Sbjct: 63  EMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRDSVKSYKQ 122

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +Y RIF R
Sbjct: 123 LPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAAYERIFTR 182

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVL 213
            GL    +  + G +GG  S EF+ +
Sbjct: 183 SGLDFKAIIGDGGAMGGKDSQEFMAI 208



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 435 ARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVN 494

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  
Sbjct: 495 KTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRN 554

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P+++ VG K  +D  VE+K + TG
Sbjct: 555 ERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATG 592


>gi|25011939|ref|NP_736334.1| prolyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|81845546|sp|Q8E362|SYP_STRA3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24413481|emb|CAD47559.1| prolyl-tRNA synthetase [Streptococcus agalactiae NEM316]
          Length = 617

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 136/214 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           Y  IF R GL    +  + G +GG  S EF+ + 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVT 214



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+ + + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEIGHIFKLGTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  
Sbjct: 500 KTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + +G
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVKIKASG 597


>gi|119717421|ref|YP_924386.1| prolyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|152112937|sp|A1SLL4|SYP_NOCSJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119538082|gb|ABL82699.1| prolyl-tRNA synthetase [Nocardioides sp. JS614]
          Length = 589

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 141/225 (62%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L  +  +IREE
Sbjct: 3   MRMSSLFVRTLREDPADAEVPSHRLLVRAGYIRRAAPGIYTWLPLGLRVLRKIENVIREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MDAIGAQEMLFPALLPREPYEATNRWTEYGDGIFRLQDRKGADYLLGPTHEEMFTLVVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY K   +
Sbjct: 123 LYSSYKDLPLSIYQIQTKYRDEARPRAGLLRGREFVMKDSYSFDVDDAGLDVSYQKHRDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y+RIF RLG + + + A SG +GG  S EF+  A  GE T V C+
Sbjct: 183 YVRIFDRLGFEYVIVEAMSGAMGGSKSEEFLAKASVGEDTYVRCT 227



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 3/160 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARGIE+GHIF  G KY+  +        GK   V MGSYGIG  R VAA+ E +HD  G
Sbjct: 424 TARGIEMGHIFQLGRKYADALDLKVLDEQGKLVTVTMGSYGIGPSRAVAAIAEGTHDELG 483

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD 396
           + WP  VAP  + ++     + V   A E+I   L K G +V +DD  +   G +F  A+
Sbjct: 484 LAWPREVAPADVHIVATGKDEHVFA-AAERIAHELDKQGVEVLYDDRPKVSPGVKFKDAE 542

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P  V+VG K ++   +E+K R TG R+D+  + +++
Sbjct: 543 LIGVPTIVVVG-KGLAAGTIEVKDRRTGQRQDVPADHLVD 581


>gi|124025277|ref|YP_001014393.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|152112940|sp|A2C0W8|SYP_PROM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123960345|gb|ABM75128.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 596

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/229 (44%), Positives = 145/229 (63%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +A+I SH+L++R G I + + GIY+++PL  K L  + +I+ EE
Sbjct: 1   MRVSRLMLNTLRDVPSEADIISHQLLVRGGYIKRITGGIYAYMPLLWKVLKKITSIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G ++  +P LQ +++W  SGR+ SY +    M  L DR  K +  GPTHEEV+T I
Sbjct: 61  LSTKGCLQTLLPQLQPSEIWERSGRWKSYTQGEGIMFSLKDRQGKELGLGPTHEEVITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF       + +Y+ M
Sbjct: 121 ISQTIHSYKQLPINIFQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANENDLQSTYSDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             +Y  IF + GL  + + A+SG IGG  S EF+V A++GE  +  S D
Sbjct: 181 RNAYQNIFTKCGLDFVCVDADSGAIGGAASQEFMVTAESGEDLILISSD 229



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  GTKYS  ++ATF    G + ++ MG YGIG  R+  A +E +HD  GI
Sbjct: 429 CRGIEIGHIFQLGTKYSKSLNATFTNEKGIEDHLWMGCYGIGISRLAQAAVEQNHDDLGI 488

Query: 339 IWPDSVAPFKI--SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IWP S+APF +   + NIK +DQ C    E IY +L +   DV  DD  ++ G +F  AD
Sbjct: 489 IWPTSIAPFTVIIIIANIKNNDQKC--LAEDIYQKLIQNRVDVLLDDRDDRAGIKFKDAD 546

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           L+G P +++ G +  S   VE+ +R T   E + L  V+   S  F+  +
Sbjct: 547 LIGIPWRIVAGRE-ASSGLVELHNRKTKTTELLDLNSVLKKLSEEFNTEK 595


>gi|256371437|ref|YP_003109261.1| prolyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008021|gb|ACU53588.1| prolyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 572

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/218 (43%), Positives = 146/218 (66%), Gaps = 1/218 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S       +E+PRDAE+ASH+L++R G +   + G++S LPLG + L+ + AI+ EE
Sbjct: 1   MRASDLVFATQREDPRDAEVASHRLLVRGGYMRALASGVWSLLPLGFRVLERIGAIVAEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  ++ +P L   +LW E+GR  +    ++R+ D    +++ GPTHEE +      
Sbjct: 61  FDRAGGNQLLLPALHPVELWQETGRNVTMDDVLMRV-DSKLGSLVLGPTHEEAVIAAVGP 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE R RFG+MR+REF+M D Y+FD+  E  + SY +++ +
Sbjct: 120 DLASYRSLPAFVYQIQTKFRDEPRARFGLMRTREFVMADGYTFDVDREHMRVSYQRVYEA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           YLR++ RLGLK++P+ A++G IGGD++HEF+V +  GE
Sbjct: 180 YLRVYRRLGLKAVPVEADAGAIGGDVNHEFMVPSAIGE 217



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMS-ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R +EVGH F  G  YS  MS  TF G DG  H   MG YGIG  R++A + E      G+
Sbjct: 402 RAVEVGHTFQLGQLYSSRMSRGTFVGEDGATHPFWMGCYGIGVSRLIAVIAEEYQRDGGL 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  +APF+++++   + D V   A   I   L ++G  V  +D G   G      +L+
Sbjct: 462 AWPLEIAPFQVAVVPAGSSDDVAATAA-NIAEELERMGRRVLLEDRGLSFGVAARDQELV 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL V+VG++ ++  +VE+++R+ G    + L +V
Sbjct: 521 GAPLWVVVGARSLARGEVELRNRVDGRTLTVQLRDV 556


>gi|283458510|ref|YP_003363138.1| prolyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134553|dbj|BAI65318.1| prolyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 624

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 138/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  IIREE
Sbjct: 17  LRLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIIREE 76

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+D YG  + RL DR    M+  PTHEE+ T + + 
Sbjct: 77  MDAIGAQEVHFPALLPREPYEATNRWDEYGDNLFRLKDRKGADMLLAPTHEEMFTLLVKD 136

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +
Sbjct: 137 LYSSYKDLPVYLYQIQTKYRDEARPRAGLLRGREFVMKDSYSFNIDDEGLNEAYMAHRAA 196

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+ + + A+SG +GG  S EF+     GE
Sbjct: 197 YQRIFERLGLEIVIVTAQSGAMGGSRSEEFLHPTPIGE 234



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 91/160 (56%), Gaps = 3/160 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R +AA+ E +HD K
Sbjct: 457 VAARGIEMGHIFALGRKYAEALGLKVLDQNGKLQTVTMGSYGVGVTRALAAIAEGNHDEK 516

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           G+IWP ++AP  + ++ I   D    +  E++ A L   G  V  DD  +   G +F  A
Sbjct: 517 GLIWPRNLAPADVHIV-ITGKDAASHEYAEELSASLESAGLQVMLDDRPKTSPGVKFGDA 575

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +LLG P  +++G  F  D  +E+K R +G   ++S+E  +
Sbjct: 576 ELLGVPTILVIGRGF-KDGVLELKDRRSGEAREVSVENAV 614


>gi|255326388|ref|ZP_05367472.1| proline--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255296605|gb|EET75938.1| proline--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 610

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 138/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  IIREE
Sbjct: 3   LRLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIIREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+D YG  + RL DR    M+  PTHEE+ T + + 
Sbjct: 63  MDAIGAQEVHFPALLPREPYEATNRWDEYGDNLFRLKDRKGADMLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +
Sbjct: 123 LYSSYKDLPVYLYQIQTKYRDEARPRAGLLRGREFVMKDSYSFNIDDEGLNEAYMAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+ + + A+SG +GG  S EF+     GE
Sbjct: 183 YQRIFERLGLEIVIVTAQSGAMGGSRSEEFLHPTPIGE 220



 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 3/160 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R +AA+ E +HD K
Sbjct: 443 VAARGIEMGHIFALGRKYAEALGLKVLDQNGKLQTVTMGSYGVGVTRALAAIAEGNHDEK 502

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           G+IWP ++AP  + ++ I   +    +  E++ A L   G  V  DD  +   G +F  A
Sbjct: 503 GLIWPRNLAPADVHIV-ITGKEAASHEYAEELSASLESAGLQVMLDDRPKTSPGVKFGDA 561

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +LLG P  +++G  F  D  +E+K R +G   ++S+E  +
Sbjct: 562 ELLGVPTILVIGRGF-KDGVLELKDRRSGEAREVSVENAV 600


>gi|270284377|ref|ZP_05966008.2| proline--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270276752|gb|EFA22606.1| proline--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 602

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 138/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G + + + GI++WLPLG   L+ + AIIREE
Sbjct: 5   LRMSSLFLRTLREDPADADVDSDKLLQRAGYLRKAAPGIWTWLPLGLSVLNKIEAIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L     +  + R++ YG+ + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MNGIGAQEVHFPALLPRAPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG K  Y +   +
Sbjct: 125 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDEEGMKRCYMEERAA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL L+ +P+ A SGP+GG  S EF+     GE
Sbjct: 185 YERIFQRLDLQYVPVFAMSGPMGGSASEEFLAPLAIGE 222



 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 2/166 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + ES HD +G+ 
Sbjct: 437 RGVEIGQVFQLGLKYSEALGLNVLNQNGKSVPVWMGCYGIGVSRVLACIAESHHDERGLA 496

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     D+   +A EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 497 WPANIAPAQVHVVAT-GKDEAAFEAAEKLVAELEARGVEVIFDDRKKVSPGVKFKDAELI 555

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL  + G   V+D  +E++ R    ++ +  E      + R +N
Sbjct: 556 GVPLIAVAGRDTVNDGTIEVRLRDGSDKQAVPAETAAQVIADRVAN 601


>gi|311064741|ref|YP_003971466.1| prolyl-tRNA synthetase ProS [Bifidobacterium bifidum PRL2010]
 gi|310867060|gb|ADP36429.1| ProS Prolyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 616

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 140/218 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE
Sbjct: 16  LRMSTMFLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + + 
Sbjct: 76  IDGIGAQEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKD 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +
Sbjct: 136 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 196 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMAIGE 233



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD +G+ 
Sbjct: 448 RGVEIGQVFQLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAETHHDERGLA 507

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    DA EK+ A L + G +V +DD  +   G +F  A+L+
Sbjct: 508 WPAVIAPAQVHVVAT-GKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGVKFKDAELI 566

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +EI++R
Sbjct: 567 GVPLIAVAGRDTVNNGTIEIRNR 589


>gi|296139421|ref|YP_003646664.1| prolyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027555|gb|ADG78325.1| prolyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 585

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 137/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L NV  ++REE 
Sbjct: 4   RFSQLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLRNVEHVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPREPYETTNRWTEYGDSLFRLQDRKGADMMLGPTHEEIFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD + EG   +Y K   +Y
Sbjct: 124 YNSYKDLPVILYQIQNKYRDEERPRAGILRGREFVMKDSYSFDTSDEGLSEAYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RL ++ + + A SG +GG  S EF+ ++  GE
Sbjct: 184 QRIFARLAIEHVIVSATSGAMGGSASEEFLAVSPVGE 220



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 269 DSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D+ P+ +   VSARGIE+GHIF  G KY+        G +GK   +  GSYGIG  R+VA
Sbjct: 411 DASPDGRGTLVSARGIEIGHIFQLGRKYTDAFEVDVLGENGKPVRLTQGSYGIGVSRLVA 470

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP  VAPF + ++ I   D+      E + A L   G  V  DD   
Sbjct: 471 VIAEQQHDDKGLRWPKGVAPFDVHVV-IANKDEGAWTGAESLAAELDAAGLQVLLDDRKA 529

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             G +F  ++LLG P  V+VG  + +D  VE++ RLTG
Sbjct: 530 SPGIKFKDSELLGVPTVVVVGRGW-ADGVVELRDRLTG 566


>gi|306826599|ref|ZP_07459905.1| proline--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|304431207|gb|EFM34210.1| proline--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 618

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 136/213 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E   DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMSSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI 213



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIEVGHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE        
Sbjct: 440 ARGIEVGHIFKLGTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVN 499

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  
Sbjct: 500 KTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++GS+F+ +DL+G P++V VG K  ++  VEIK + TG   +++ E +I
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLI 608


>gi|116100417|gb|ABJ65563.1| Prolyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 615

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 135/207 (65%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE  + GA
Sbjct: 2   LIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREEFEKIGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R  +KSY+
Sbjct: 62  VEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRDAVKSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +Y  IF 
Sbjct: 122 QLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKAYEAIFT 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVL 213
           R GL+   +  + G +GG  S EF+ +
Sbjct: 182 RAGLEFKAIIGDGGAMGGKDSQEFMAV 208



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 435 ARGIEIGHIFKLGTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVN 494

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +AP+ + LI +   D+      +++ A L+  G DV  DD  
Sbjct: 495 KTPKGQYRYAWGINFPKELAPYDVHLITVNTKDEEANALTDRLEAALAAEGYDVLIDDRN 554

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + TG
Sbjct: 555 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVKIKATG 592


>gi|312277616|gb|ADQ62273.1| Prolyl-tRNA synthetase [Streptococcus thermophilus ND03]
          Length = 615

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 135/207 (65%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE  + GA
Sbjct: 2   LIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREEFEKIGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R  +KSY+
Sbjct: 62  VEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRDAVKSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +Y  IF 
Sbjct: 122 QLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKAYEAIFT 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVL 213
           R GL+   +  + G +GG  S EF+ +
Sbjct: 182 RAGLEFKAIIGDGGAMGGKDSQEFMAV 208



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE        
Sbjct: 435 ARGIEIGHIFKLGTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVN 494

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +AP+ + LI +   D+      +++ A L+  G DV  DD  
Sbjct: 495 KTPKGQYRYAWGINFPKELAPYDVHLITVNTKDEEANALTDRLEAALAAEGYDVLIDDRN 554

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + TG
Sbjct: 555 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVKIKATG 592


>gi|331698443|ref|YP_004334682.1| Prolyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326953132|gb|AEA26829.1| Prolyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 577

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 135/215 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG + L  +  I+REE + 
Sbjct: 2   SSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLRVLRRIEEIVREEMDA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   D +  + R+  YG  + RL DR     + GPTHEE+ T   +    
Sbjct: 62  IGAQEIQFPALLPRDPYESTNRWTEYGPNLFRLKDRKGNDYLLGPTHEELFTLAVKGEYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY     +Y++
Sbjct: 122 SYKDYPVILYQIQNKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLSESYALHRKAYVK 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +F RL L+ + + A SG +GG  S EF+  A+TGE
Sbjct: 182 VFDRLSLRYVIVSATSGAMGGSASEEFLAEAETGE 216



 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 2/160 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE+GHIF  G KY+        G D K   + MGSYGIG  R+VA + E SHD  G
Sbjct: 413 SARGIEIGHIFQLGRKYTNAFGLDALGPDSKPVRITMGSYGIGVSRLVAVIAEQSHDESG 472

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++WP +V+P+ + ++    ++++     EK+ A L   G  V  DD     G +FA A+L
Sbjct: 473 LVWPRAVSPYDVHVVVAGKNEEITA-GGEKLAAELEAAGLSVLLDDRKASPGVKFADAEL 531

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P  V+VG + ++D K+E+K R +G RE+++L+  + +
Sbjct: 532 VGVPTIVVVG-RGLADGKIEVKDRRSGEREEIALDGAVAH 570


>gi|297243824|ref|ZP_06927754.1| prolyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296888245|gb|EFH26987.1| prolyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 604

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIREE N 
Sbjct: 2   SQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIREEING 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEEV T + +    
Sbjct: 62  IGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHEADYLLAPTHEEVFTLLVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+M+D YSF +  +G K +Y +   +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDGYSFSIDEDGLKSAYVEERAAYAR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF+RLG+K + + A SGP+GG  S EF+     GE
Sbjct: 182 IFNRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGE 216



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 436 RGVEIGQVFQLGLKYSKALGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLA 495

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     DQV  DA EK+   LSK G +V +DD  +   G +F  A+L+
Sbjct: 496 WPMAIAPAQVHVVAT-GKDQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELV 554

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +EI+ R
Sbjct: 555 GVPLIAVAGRDTVNNGTIEIRDR 577


>gi|317125361|ref|YP_004099473.1| prolyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
 gi|315589449|gb|ADU48746.1| prolyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
          Length = 588

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 1/223 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DAE+ SH+L++R G I + S G+Y+WLPLG + L NV  I+REE + 
Sbjct: 6   SSLFLRTLREDPADAEVPSHRLLVRAGYIRRVSPGVYTWLPLGLRVLRNVERIVREEMDA 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T   +    
Sbjct: 66  IGAQELLFPALLPREPFDASGRWAEYGDNIFRLQDRKGADHLLGPTHEEMFTLTVKDLYS 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y+R
Sbjct: 126 SYKDLPLSIYQIQTKYRDEARPRAGLLRGREFVMKDSYSFDIDEAGLDKSYQAHRDAYVR 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           IF RLG   + + A +G +GG  S EF+  A+ GE T V C+ 
Sbjct: 186 IFDRLGFHYVIVEAMAGAMGGSKSEEFLATAEVGEDTYVHCTN 228



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 5/174 (2%)

Query: 266 KLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P    V   ARGIE+GH+F  G KY+  +       +GK   V MGSYG+G  R
Sbjct: 408 RFGDPCPNCDHVLEGARGIEMGHVFQLGKKYAEALDLRVLDQNGKLTTVVMGSYGVGVSR 467

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VA V+E ++D  GIIWP  + P  + ++     + + R A + I   L   G     DD
Sbjct: 468 AVACVVEGNYDDSGIIWPRELTPADVHIVAAGKDEPLFR-AADDIARDLEAHGLTCIVDD 526

Query: 384 -MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G   G +F  ++L+G P  ++VG + ++D KVEIK R +G R +++L+ V+ 
Sbjct: 527 RKGVSPGVKFKDSELIGVPTIIVVG-RGLADGKVEIKDRRSGERREVALDSVVE 579


>gi|300743963|ref|ZP_07072983.1| proline--tRNA ligase [Rothia dentocariosa M567]
 gi|300380324|gb|EFJ76887.1| proline--tRNA ligase [Rothia dentocariosa M567]
          Length = 605

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/218 (44%), Positives = 138/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REE
Sbjct: 3   LRLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR    M+  PTHEE+ T + + 
Sbjct: 63  MNAIGAQEVLFPALLPREPYEATNRWEEYGDNLFRLQDRKGADMLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +  EG   +Y     +
Sbjct: 123 LYSSYKDLPLYIYQIQNKYRDEARPRAGLLRGREFVMKDSYSFTVDDEGLNEAYEAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF+RLGL ++ + A+SG +GG  S EF+     GE
Sbjct: 183 YQRIFNRLGLDTVIVTAQSGAMGGSRSEEFLHPTPVGE 220



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 3/160 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           ++ARGIE+GHIF  G KY+  +       +GK   V MGSYGIG  R +AA+ E +HD K
Sbjct: 439 IAARGIEMGHIFQLGRKYAEALGLKVLDQNGKLQTVTMGSYGIGVTRALAAIAEGNHDEK 498

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVA 395
           G+IWP ++AP  + ++ I   D    +  E + A L   G  V  DD +    G +F  A
Sbjct: 499 GLIWPRNLAPADVHIV-ITNKDAQSHEYAETLSAELEGAGVQVLLDDRLKTSPGVKFGDA 557

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +LLG P  +++G  F  D  +E+K R +G   D+++ + +
Sbjct: 558 ELLGVPTILVIGRGF-KDGTLELKDRRSGEARDIAVSDAV 596


>gi|291004232|ref|ZP_06562205.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 581

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G + +   GIYSWLPLG + L N+  I+R+E 
Sbjct: 4   RMSTLFLRTLREDPADAEVPSHRLLVRAGYVRRIGPGIYSWLPLGLRVLRNIEEIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  DAIGAQEIHFPALLPKEPYEATNRWTEYGPNLFRLKDRKGGDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG  +SY     +Y
Sbjct: 124 YSSYKDYPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDDEGLTNSYRLHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +RIF R+GL+ + + A SG +GG  S EF+  A TGE
Sbjct: 184 IRIFDRVGLRYVIVAATSGAMGGSASEEFLAEAPTGE 220



 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E   V+ARGIE+GHIF  G KY+   S    G DGK   + MGSYG+G  R+VAA+ E S
Sbjct: 412 EGTLVAARGIEIGHIFQLGRKYADAFSLDALGQDGKPKRITMGSYGVGVSRMVAAIAEQS 471

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD  G++WP  VAP  + ++ I   D+  R+  E++ A L   G  V  DD     G +F
Sbjct: 472 HDELGLVWPREVAPADVHVV-IAGKDESVREGAERLAADLDAAGVRVLLDDRNASPGVKF 530

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           A A+L+G P  ++VG K ++   VE+K R +G RE++ ++  + +
Sbjct: 531 ADAELVGVPTILVVG-KGLAKGVVEVKDRRSGDREEVPVDGAVEH 574


>gi|329117585|ref|ZP_08246302.1| proline--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326907990|gb|EGE54904.1| proline--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 618

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 154/253 (60%), Gaps = 3/253 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLSPALLTADLWRESGRYETYGDDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHPDYEDLDIAYEDYRRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +  T E         +D  IPS +   +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAI--TPERTDLDRWLVLDKSIPSVDEIPE 238

Query: 241 DII-SLNSIVEQW 252
           D++ ++ + ++ W
Sbjct: 239 DVLDAIKAELKAW 251



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 14/169 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------S 332
           ARGIE+GHIF  GT+YS  + AT    +G+   + MG YGIG  R+++AVIE       S
Sbjct: 440 ARGIEIGHIFKLGTRYSDSLGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVS 499

Query: 333 HDGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              KG       I +P  +APF + LI +   DQ  ++   +I   L   G +V  DD  
Sbjct: 500 KTPKGDYRFAWGINFPKELAPFDVHLITVNTKDQEAQELTNRIETDLMAKGYEVLTDDRN 559

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           E++GS+F+ +DL+G P++V VG K  S+  VEIK + +G   +++ E +
Sbjct: 560 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEIKIKSSGASIEVNAENL 607


>gi|146319615|ref|YP_001199327.1| prolyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146321813|ref|YP_001201524.1| prolyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253752613|ref|YP_003025754.1| prolyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253754439|ref|YP_003027580.1| prolyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|253756372|ref|YP_003029512.1| prolyl-tRNA synthetase [Streptococcus suis BM407]
 gi|166980162|sp|A4W435|SYP_STRS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980163|sp|A4VXT8|SYP_STRSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145690421|gb|ABP90927.1| Prolyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145692619|gb|ABP93124.1| Prolyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251816902|emb|CAZ52551.1| prolyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251818836|emb|CAZ56679.1| prolyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251820685|emb|CAR47447.1| prolyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292559230|gb|ADE32231.1| Prolyl-tRNA synthetase [Streptococcus suis GZ1]
          Length = 620

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 135/213 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 441 ARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQHARLFVN 500

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+   +  + I A L   G +V  DD  
Sbjct: 501 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRN 560

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P++V VG K  +D  VE+K + TG
Sbjct: 561 ERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTG 598


>gi|311113213|ref|YP_003984435.1| proline--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310944707|gb|ADP41001.1| proline--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 605

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/218 (44%), Positives = 138/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REE
Sbjct: 3   LRLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR    M+  PTHEE+ T + + 
Sbjct: 63  MNAIGAQEVLFPALLPREPYEATNRWEEYGDNLFRLQDRKGADMLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +  EG   +Y     +
Sbjct: 123 LYSSYKDLPLYIYQIQNKYRDEARPRAGLLRGREFVMKDSYSFTVDDEGLNEAYEAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF+RLGL ++ + A+SG +GG  S EF+     GE
Sbjct: 183 YQRIFNRLGLDTVIVTAQSGAMGGSRSEEFLHPTPVGE 220



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 3/160 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           ++ARGIE+GHIF  G KY+  +       +GK   V MGSYGIG  R +AA+ E +HD K
Sbjct: 439 IAARGIEMGHIFQLGRKYAEALGLKVLDQNGKLQTVTMGSYGIGVTRALAAIAEGNHDEK 498

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVA 395
           G+IWP ++AP  + ++ I   D    +  E + A L   G  V  DD +    G +F  A
Sbjct: 499 GLIWPRNLAPADVHIV-ITNKDAQSHEYAETLSAELEGAGVQVLLDDRLKTSPGVKFGDA 557

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +LLG P  +++G  F  D  +E+K R  G   D+++ + +
Sbjct: 558 ELLGVPTILVIGRGF-KDGTLELKDRRNGEARDIAVSDAV 596


>gi|302024530|ref|ZP_07249741.1| prolyl-tRNA synthetase [Streptococcus suis 05HAS68]
          Length = 620

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 135/213 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 441 ARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQHARLFVN 500

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+   +  + I A L   G +V  DD  
Sbjct: 501 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRN 560

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P++V VG K  +D  VE+K + TG
Sbjct: 561 ERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTG 598


>gi|223933900|ref|ZP_03625863.1| prolyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897426|gb|EEF63824.1| prolyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 620

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 135/213 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF R GL+   +  + G +GG  S EF+ +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 14/170 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 441 ARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQHARLFVN 500

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+   +  + I A L   G +V  DD  
Sbjct: 501 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRN 560

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++G +F+ +DL+G P++V VG K  +D  VE+K + TG   ++ +++++
Sbjct: 561 ERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLL 609


>gi|283783528|ref|YP_003374282.1| proline--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441181|gb|ADB13647.1| proline--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 610

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/218 (44%), Positives = 139/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIR+E
Sbjct: 6   LRMSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIRDE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR+    +  PTHEEV T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHQADYLLAPTHEEVFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+M+D YSF +  +G K +Y +   +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDGYSFSIDEDGLKSAYVEERAA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLG+K + + A SGP+GG  S EF+     GE
Sbjct: 186 YARIFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGE 223



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 443 RGVEIGQVFQLGLKYSKALGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLA 502

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     DQV  DA EK+   LSK G +V +DD  +   G +F  A+L+
Sbjct: 503 WPMAIAPAQVHVV-ATGKDQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELV 561

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  + G   V++  +EI+ R     E + ++E       R S
Sbjct: 562 GVPLIAVAGRDTVNNGTIEIRDRNGSNVEAVPVDEAAARIVERVS 606


>gi|269219602|ref|ZP_06163456.1| proline--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210844|gb|EEZ77184.1| proline--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 594

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 135/215 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  +  I+REE   
Sbjct: 2   SSLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLRKIERIVREEMEA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G+ E+  P L   + +  SGR+  YG  + +L DR +   +  PTHEE+ T + +    
Sbjct: 62  AGSQEVHFPALLPREPYEASGRWSDYGPTLFKLKDRKESDYLLAPTHEELFTLLVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP + YQIQ K+RDE RPR GV+RSREF+MKDAYSFD+   G   SY  M  +Y R
Sbjct: 122 SYKDLPLSLYQIQTKYRDEARPRAGVIRSREFVMKDAYSFDVDEAGLDASYAAMRSAYQR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLGL  +   A SG +GG  S EF+   + GE
Sbjct: 182 IFARLGLPFVICSAVSGAMGGSRSEEFLFPCEIGE 216



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 86/144 (59%), Gaps = 3/144 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVGHIF  G KY+  +  +    +GK   V MGSYGIG  RV+AA+ E +HDG+G+
Sbjct: 425 AKGIEVGHIFQLGRKYAKALGLSVLDENGKSRTVTMGSYGIGITRVLAALAEENHDGRGL 484

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP SVAP  + ++     D     A E+I A L   G +V  DD  +   G +FA  +L
Sbjct: 485 MWPASVAPAHVHIVA-AGKDDALYAAAEEIAAGLEADGVEVLLDDRRKVSAGVKFADYEL 543

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           LG P  V+VG + +++  VEI+ R
Sbjct: 544 LGVPFGVVVG-RGLAEGLVEIRDR 566


>gi|269795644|ref|YP_003315099.1| prolyl-tRNA synthetase, family II [Sanguibacter keddieii DSM 10542]
 gi|269097829|gb|ACZ22265.1| prolyl-tRNA synthetase, family II [Sanguibacter keddieii DSM 10542]
          Length = 591

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 138/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V A++REE
Sbjct: 3   LRLSTLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEAVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  +GR+  YG  + RL DR D   +  PTHEE+ T + + 
Sbjct: 63  MQAAGAQEVHFPALLPREPYEATGRWTEYGPNLFRLKDRRDNDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T +Q+Q K+RDE RPR G++R REF+MKDAYSFD+   G + SY     +
Sbjct: 123 LYSSYKDLPVTLFQVQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLEASYLVQRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF RLGL+ + + A SG +GG  S EF+     GE
Sbjct: 183 YEKIFTRLGLEYVVVAATSGAMGGSRSEEFLHPTAIGE 220



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 3/147 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYGIG  R +AA+ E++HD KG+
Sbjct: 426 ARGIEIGHIFQLGRKYADALGLKVLDVNGKQVTVTMGSYGIGVTRALAALAEANHDEKGL 485

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  VAP  + ++     D     A E I   LS    +V +DD  +   G +FA A+L
Sbjct: 486 AWPAHVAPAHVHVVA-TGKDPAVFAAAETIAQELSAQRVEVLYDDRPKVSPGVKFADAEL 544

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LG    V+V  + ++D  VE++ R+ G
Sbjct: 545 LGV-PLVVVVGRGLADGVVEVRPRVGG 570


>gi|328869252|gb|EGG17630.1| prolyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 642

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 147/223 (65%), Gaps = 2/223 (0%)

Query: 3   RSKYFLPILQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RSK F+P++++ P D E++ S  LM +TGMI + S G+Y  LPL Q+A++N+  II EE 
Sbjct: 77  RSKLFIPVVRDQPMDKEMSQSQLLMQKTGMIRRASLGMYMTLPLAQRAMENLIKIIDEEM 136

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  ++++P L S DLW ++GR+++ G E++++ DR ++     PTHEE+ T +  + 
Sbjct: 137 QGVGGQKLTMPLLVSKDLWEKTGRWETTGAELIKVKDRKEEEYCLAPTHEEIFTSLVANE 196

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             S  N P   YQI  K+RDE+RPRFG++R REFLMKD YSFD T   +  +YN +  +Y
Sbjct: 197 RLSNSNFPLRLYQIGNKYRDEIRPRFGLVRGREFLMKDLYSFDQTRVEAVATYNDIKGAY 256

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            R+F R+GLK   + A+SG IGG +SHEF VL  +GE T V C
Sbjct: 257 HRVFDRVGLKYACVEADSGNIGGSMSHEFQVLTGSGEDTVVSC 299



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 12/173 (6%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIFY GTKYS  + A  K  +GK+  ++MG YGIG  R++AA+IES  D +GI+
Sbjct: 469 QGIEVGHIFYLGTKYSSKLGANMKDKNGKNQPIEMGCYGIGVSRLLAAMIESKRDDRGIV 528

Query: 340 WPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSK----VGCDVFWDDMGEQIGSQF 392
           W   VAP+K   I I   DQ  R   ++ E +Y  L +        V  + +   IG + 
Sbjct: 529 WSKCVAPYK--AIIIPFSDQRNRGSYESAEHLYDLLIRDPFLRNQIVLENRLDMSIGKRI 586

Query: 393 AVADLLGFPLQVIV---GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             A+L+GFP  + V    SK   +   E++ R  G +   +  E+ ++  ++F
Sbjct: 587 NEANLIGFPYLIFVNNNASKKNGEDVFEVEDRDNGQKSYFTAFELYHFFRYQF 639


>gi|296394267|ref|YP_003659151.1| prolyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181414|gb|ADG98320.1| prolyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 599

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/247 (42%), Positives = 148/247 (59%), Gaps = 7/247 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+A+HKL++R G + + S G+++WLPLG K L  V A++REE 
Sbjct: 4   RLSELFVRTLREDPADAEVANHKLLVRGGYVRRVSPGVFTWLPLGLKVLRQVEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L     +  S R+  YG  + RL DR     +  PTHEE+   I +  
Sbjct: 64  DAIGAQEILLPALAPRQPYETSNRWTEYGDNLFRLKDRKGGDYLLAPTHEELFALIVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G+K +Y+    +Y
Sbjct: 124 YTSYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDAYSFDVDEAGNKAAYHAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPI------PS 234
            RIF RLG+  + + A SG +GG  S EF+  +  GE T V C +      +      P+
Sbjct: 184 QRIFDRLGVSYVIVAATSGAMGGSASEEFLAESAIGEDTYVRCLESGYAANVEAVATPPA 243

Query: 235 ENTDFDD 241
           E  DF D
Sbjct: 244 EPVDFSD 250



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 3/169 (1%)

Query: 258 ATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T D    +  D  P+ +   V+ARGIE+GH+F  GTKY+   S    G +GK   + MG
Sbjct: 394 GTIDAAEVREGDPSPDGRGPLVAARGIEIGHVFALGTKYTDAFSVDVLGENGKPARLIMG 453

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+V  + E   D KG+ WP  VAPF++ +++          A        S  
Sbjct: 454 SYGIGVSRLVGVIAEQWLDEKGLRWPPQVAPFQVHVLSTGKGGAEAEAAERYAAELESH- 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G  V  DD     G +FA A+LLG P+ V+VG  +  + KVE+K R +G
Sbjct: 513 GLRVLLDDRKASPGVKFADAELLGAPVVVVVGRDWAGEGKVELKERFSG 561


>gi|227495079|ref|ZP_03925395.1| proline--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831531|gb|EEH63914.1| proline--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 603

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 138/215 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S +F+  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  ++REE + 
Sbjct: 6   SSFFVRTLREDPADAEVTSHKLLVRAGYIRRTAPGIYTWLPLGLQVLKRIEKVVREEMDA 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L  A+ + ++ R++ YG  + +L DR     +  PTHEE+ T + +    
Sbjct: 66  VGAQEVHFPALLPAEPYQKTNRWEEYGPTLFKLRDRKAADYLLAPTHEEMFTLLVKDMYS 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY+    +Y R
Sbjct: 126 SYKDLPVTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDQEGLNTSYDLQRQAYQR 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLGL+ +   A SG +GG  S EF+   + GE
Sbjct: 186 IFERLGLEYVICSAMSGAMGGSRSEEFLHPCEIGE 220



 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  RV+AA+ ES +D  G+
Sbjct: 433 ARGIEIGHIFQLGKKYAEALDLKVLDQNGKTQVVTMGSYGVGVSRVLAALAESCNDENGL 492

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  +APF + ++     +++   A   I   +S  G DV +DD  +   G +FA A+L
Sbjct: 493 AWPMILAPFHLQVLATGKGEELFETAG-SIAKAVSDAGFDVLYDDRPKVSAGVKFADAEL 551

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           LG P  ++VG + + D  VE++ R  G   ++ + E           NR
Sbjct: 552 LGMPYVLVVG-RGLKDGVVELRDRRNGTAVELPVAEASAEILRVLEENR 599


>gi|260771311|ref|ZP_05880237.1| prolyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260613627|gb|EEX38820.1| prolyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 541

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 131/196 (66%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI + + G+Y+WLP G + L  V  I+R+E +R GAIE  +P +Q  +LW E+GR +  G
Sbjct: 1   MIRKLASGLYTWLPTGLRVLRKVENIVRQEIDRAGAIETLMPVVQPFELWEETGRSEKMG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RPRFGVM
Sbjct: 61  PELLRFTDRHVRPFVLSPTAEEVITALVRNEVSSYKQLPLNLYQIQTKFRDERRPRFGVM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REF M DAYSFDL  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+ S EF
Sbjct: 121 RAREFSMMDAYSFDLDKQGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGNGSQEF 180

Query: 211 IVLADTGETQVFCSKD 226
            VLA++GE  +  S +
Sbjct: 181 HVLAESGEDLIVFSTE 196



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+ +  G DGK+  ++MG YGIG  RVVAA IE ++D  GII
Sbjct: 377 RGIEVGHIFQLGTNYSEKMNCSVLGPDGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGII 436

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  + A EK+YA LS  G DV +DD  E+ G  F+  +L+
Sbjct: 437 WPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELSAAGIDVLFDDRKERPGVMFSDMELI 496

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  +++G + + +   E K+R  G +  +++++++ +   + +
Sbjct: 497 GVPHTIVIGDRSMDEGNFEYKNRRNGEKTAIAIDQIVEHIKAQLA 541


>gi|296454700|ref|YP_003661843.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184131|gb|ADH01013.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 604

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 139/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 6   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 186 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 223



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 438 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPSVIAPAAVHVVAT-GKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  +VG  +V+D  +EI+ R    +  +   E     + RF+
Sbjct: 557 GVPLIAVVGRDYVNDGTIEIRDRNGENKVAVPAAEAAGTLADRFA 601


>gi|298346548|ref|YP_003719235.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|298236609|gb|ADI67741.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 43063]
          Length = 623

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 140/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            R+F RLGL  +   A SGP+GG  S EF+     GE
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGE 220



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  +    +GK   V MGSYGIG  R+VAA+ E +HD +G++
Sbjct: 434 RGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMGSYGIGVSRLVAAIAEENHDDRGLM 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++APF++ ++      ++   A EK+  +L   G  V +DD  +   G +F  A+LL
Sbjct: 494 WPLNIAPFQVHVLATGKDPEIFATA-EKLACQLDAAGLQVLYDDRPKASAGVKFKDAELL 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  ++VG K +++ KVEI+ R  G  ++ + E  + 
Sbjct: 553 GMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESCVE 589


>gi|218282600|ref|ZP_03488838.1| hypothetical protein EUBIFOR_01424 [Eubacterium biforme DSM 3989]
 gi|218216471|gb|EEC90009.1| hypothetical protein EUBIFOR_01424 [Eubacterium biforme DSM 3989]
          Length = 564

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 98/221 (44%), Positives = 143/221 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F   L+EN +D +  S  L++R GMI + S GIY  +P+G+K L  V  IIREE
Sbjct: 1   MKLSQSFFYTLRENAKDEDSVSSNLLVRAGMIKKCSNGIYMIMPMGKKVLSKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A E+ +P L   D++V+SGR +++G  M  L+DR +K  + GPTHEE+       
Sbjct: 61  MDAKDAQELLMPALIPEDVYVQSGRREAFGSNMFSLSDRYNKRYVLGPTHEELFAVASSM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY++ P+  YQIQ K+RDE RPR+G++R REF+MKDAY+FD+   G   +YNKM+ +
Sbjct: 121 DGKSYKDFPYNLYQIQTKYRDETRPRYGLIRVREFIMKDAYTFDVDEAGLDVAYNKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y RI  RLGL+   ++A++G +GG LS E+  L+  GE  V
Sbjct: 181 YCRIMDRLGLEYKIVKADTGAMGGLLSEEYQALSSIGEDVV 221



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 1/163 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG++F  GTKYS  M+  +  A+ +   V MGSYGIG  R +AAV +  HD  GI W
Sbjct: 402 GIEVGNLFKLGTKYSKSMNLYYTDANNQLQPVWMGSYGIGLERCMAAVADQHHDDFGIKW 461

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +APF+++++ +   D+        +Y    +   DV  DD  E+ G +F   +L+G 
Sbjct: 462 PVEIAPFRLAIVPVSLKDEEQVKIANDLYEYCKEHKFDVILDDRNERPGVKFKDMELIGI 521

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P ++ VG + V + K+E   R TG + ++++E+V +     F+
Sbjct: 522 PYRITVG-RGVKEGKLEWTDRYTGEKSEIAIEDVYSEIEKVFA 563


>gi|315657037|ref|ZP_07909922.1| proline--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492429|gb|EFU82035.1| proline--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 623

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 140/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            R+F RLGL  +   A SGP+GG  S EF+     GE
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGE 220



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  +    +GK   V MGSYGIG  R+VAA+ E +HD +G++
Sbjct: 434 RGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMGSYGIGVSRLVAAIAEENHDDRGLM 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++APF++ ++      ++   A EK+  +L   G  V +DD  +   G +F  A+LL
Sbjct: 494 WPLNIAPFQVHVLATGKDPEIFATA-EKLACQLDAAGLQVLYDDRPKASAGVKFKDAELL 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  ++VG K +++ KVEI+ R  G  ++ + E  + 
Sbjct: 553 GMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESCVE 589


>gi|315655105|ref|ZP_07908007.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490586|gb|EFU80209.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 623

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 140/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            R+F RLGL  +   A SGP+GG  S EF+     GE
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGE 220



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  +    +GK   V MGSYGIG  R+VAA+ E +HD KG+I
Sbjct: 434 RGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMGSYGIGVSRLVAAIAEENHDDKGLI 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++APF++ ++      ++   A EK+  +L   G  V +DD  +   G +F  A+LL
Sbjct: 494 WPLNIAPFQVHVLATGKDPEIFATA-EKLACQLDAAGLQVLYDDRPKASAGVKFKDAELL 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P  ++VG K +++ K+EI+ R  G  ++ + E  +        N 
Sbjct: 553 GMPYALVVG-KGLAEGKIEIRQRREGTTQETTPESCVEELLQAIENE 598


>gi|213691491|ref|YP_002322077.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522952|gb|ACJ51699.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457566|dbj|BAJ68187.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 604

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 139/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 6   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 186 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 223



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 438 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ + L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPSVIAPAAVHVVAT-GKDAVAFEGAEKLVSELEAKGLEVIYDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  +VG  +V+D  +E++ R
Sbjct: 557 GVPLVAVVGRDYVNDGTIELRDR 579


>gi|304389734|ref|ZP_07371693.1| proline--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304326910|gb|EFL94149.1| proline--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 623

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 140/217 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            R+F RLGL  +   A SGP+GG  S EF+     GE
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGE 220



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  +    +GK   V MGSYGIG  R+VAA+ E +HD +G++
Sbjct: 434 RGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMGSYGIGVSRLVAAIAEENHDDRGLM 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++APF++ ++      ++   A EK+  +L   G  V +DD  +   G +F  A+LL
Sbjct: 494 WPLNIAPFQVHVLATGKDPEIFATA-EKLACQLDAAGLQVLYDDRPKASAGVKFKDAELL 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  ++VG K +++ KVEI+ R  G  ++ + E  + 
Sbjct: 553 GMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESCVE 589


>gi|312134020|ref|YP_004001359.1| pros [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773326|gb|ADQ02814.1| ProS [Bifidobacterium longum subsp. longum BBMN68]
          Length = 604

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 139/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 6   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 186 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 223



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 438 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPSVIAPAAVHVVAT-GKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  +VG  +V+D  +E++ R
Sbjct: 557 GVPLVAVVGRDYVNDGTIELRDR 579


>gi|322689774|ref|YP_004209508.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691722|ref|YP_004221292.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456578|dbj|BAJ67200.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320461110|dbj|BAJ71730.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 614

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 139/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 16  LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 76  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 136 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 196 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 233



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 448 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 507

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 508 WPSVIAPAAVHVVAT-GKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 566

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  +VG  +V+D  +E++ R
Sbjct: 567 GVPLVAVVGRDYVNDGTIELRDR 589


>gi|298252610|ref|ZP_06976404.1| prolyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297532974|gb|EFH71858.1| prolyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 603

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 138/215 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIR+E N 
Sbjct: 2   SQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIRDEING 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R++ YG  + RL DR+    +  PTHEEV T + +    
Sbjct: 62  IGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHQADYLLAPTHEEVFTLLVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+M+DAYSF +  +G K +Y +   +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDAYSFSIDEDGLKSAYVEERAAYAR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLG+K + + A SGP+GG  S EF+     GE
Sbjct: 182 IFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGE 216



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 436 RGVEIGQVFQLGLKYSKALGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLA 495

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     DQV  DA EK+   LSK G +V +DD  +   G +F  A+L+
Sbjct: 496 WPMAIAPAQVHVVAT-GKDQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELV 554

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +EI++R
Sbjct: 555 GVPLIAVAGRDTVNNGTIEIRNR 577


>gi|296129352|ref|YP_003636602.1| prolyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021167|gb|ADG74403.1| prolyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 597

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 134/218 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V  ++REE
Sbjct: 3   LRMSTLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEQVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  +GR+  YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MAAIGAQEVHFPALLPKEPYEATGRWTEYGPNIFRLKDRKGGDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G   SY     +
Sbjct: 123 LYSSYKDLPLALYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLAASYEAQRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL+ + + A SG +GG  S EF+     GE
Sbjct: 183 YQRIFDRLGLEYVIVAATSGAMGGSRSEEFLTPTAIGE 220



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 88/154 (57%), Gaps = 3/154 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++HD +G+
Sbjct: 429 ARGIEIGHIFQLGRKYAQALGLTVLDQNGKAQVVTMGSYGIGVTRVLAALAEANHDERGL 488

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  VAP  + ++     D    +A E +   LS  G +V +DD  +   G +FA A+L
Sbjct: 489 AWPADVAPAHVHVLA-TGKDAAVFEAAEALATTLSARGVEVLYDDRPKVSPGVKFADAEL 547

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LG    V+V  + ++D  VE++ R  G  E + +
Sbjct: 548 LGV-PLVVVVGRGLADGVVEVRPRAGGTSEQVPV 580


>gi|189440768|ref|YP_001955849.1| prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|189429203|gb|ACD99351.1| Prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
          Length = 604

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 139/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 6   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 186 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 223



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 438 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPSVIAPAAVHVVAT-GKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  +VG  +V+D  +E++ R
Sbjct: 557 GVPLVAVVGRDYVNDGTIELRDR 579


>gi|239621659|ref|ZP_04664690.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515534|gb|EEQ55401.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 607

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 139/218 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 9   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 69  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 129 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 189 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 226



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 441 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 500

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 501 WPSVIAPAAVHVVAT-GKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 559

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  +VG  +V+D  +E++ R
Sbjct: 560 GVPLVAVVGRDYVNDGTIELRDR 582


>gi|295396369|ref|ZP_06806535.1| proline--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970809|gb|EFG46718.1| proline--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 609

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 142/218 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E P DA++ SHKL+ R   I + + GIY+WLPLG + LD V AI+R+E
Sbjct: 3   LRMSTLFVRTLKEEPADADVKSHKLLHRASYIRRSAPGIYTWLPLGLRVLDKVEAIVRDE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G+ E+  P L  A+ + +SGR++++G+ + RL DR     +  PTHEEV T + + 
Sbjct: 63  MSKAGSQEVHFPALLPAEPYEKSGRWEAFGEGIFRLQDRKKADYLLAPTHEEVFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKDAYSFD    G   +Y KM  +
Sbjct: 123 LYSSYKDLPASLYQIQTKYRDEARPRAGLLRGREFIMKDAYSFDTDDAGLDAAYEKMRKA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+ +++RL L  + + A  G +GG  +HEF+  ++ GE
Sbjct: 183 YINVYNRLQLPFVMVEATPGAMGGSGTHEFLYPSEVGE 220



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 84/147 (57%), Gaps = 3/147 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+E+G IF  GT+Y+  +  +    +GK   V MGSYGIG  RV+A + E   D KG+
Sbjct: 432 ARGVEIGQIFKLGTRYAEALGLSVLDENGKARVVTMGSYGIGVSRVLACIAEEHADDKGL 491

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP ++AP  + ++      QV  D  E++ A + K G  V  DD  +   G +F  A+L
Sbjct: 492 VWPANLAPADVHIVATGKDAQVF-DVAEELTAEVEKAGYTVLLDDRPKVSPGMKFGDAEL 550

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LG P  V+VG + + D  VE++ R TG
Sbjct: 551 LGMPTIVVVG-RGLKDGVVELRDRATG 576


>gi|225021160|ref|ZP_03710352.1| hypothetical protein CORMATOL_01172 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946067|gb|EEG27276.1| hypothetical protein CORMATOL_01172 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 584

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 19/249 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  ++REE 
Sbjct: 4   RLSSLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLRKIEKVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L S + + ++ R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  DHIGAQELLFPALLSREPYEQTRRWTEYGDNLFRLKDRKGNDMLLGPTHEEMFARQVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY     +Y
Sbjct: 124 FTSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEQSYLAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-------------------TQVF 222
             IF RL L+    +A SG +GG  S EF+ ++  GE                   TQ  
Sbjct: 184 QAIFDRLNLEYAICKATSGAMGGSASEEFLAISPNGEDTFVRATEGDYAANVEAVTTQPG 243

Query: 223 CSKDFMDFP 231
            ++DF + P
Sbjct: 244 TTRDFTNLP 252



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ + V    RGIE+GHIF  G KY+           GK     MGSYGIG  R+V 
Sbjct: 409 DPAPDGQGVLTLERGIEIGHIFQLGRKYTEVFDVQILDEHGKRAIPTMGSYGIGVSRLVG 468

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD  G+ WP  VAP+++ ++ +   D+    A + I  +L   G +V +DD  +
Sbjct: 469 VIAEQHHDDNGLNWPVEVAPYQVHVV-VANKDKAALAAGDDIVVQLDAAGVEVLFDDRPK 527

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  ++LLG P  V++G  F S+  VE++ R
Sbjct: 528 VSPGVKFKDSELLGMPYIVVLGRSF-SNGIVELRIR 562


>gi|294790672|ref|ZP_06755830.1| proline--tRNA ligase [Scardovia inopinata F0304]
 gi|294458569|gb|EFG26922.1| proline--tRNA ligase [Scardovia inopinata F0304]
          Length = 598

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/271 (39%), Positives = 155/271 (57%), Gaps = 6/271 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG + L+ + AIIREE
Sbjct: 6   LRMSSLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + + 
Sbjct: 66  INAIGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K +Y +   +
Sbjct: 126 MYTSYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKAYLQERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIFHRL L  + + A SGP+GG  S EF+     GE     +     + + +  T   
Sbjct: 186 YERIFHRLDLNYVIVHAVSGPMGGSESEEFLAPMPIGEDTFALAPSGKAWNVEALTTPES 245

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           + +  +SI      P A   D  +    DSL
Sbjct: 246 EPLDFSSI------PAAQVKDTPDSTTIDSL 270



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 92/158 (58%), Gaps = 2/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  M       +G+   V MG YGIG  RV++ + E+ HD KG+I
Sbjct: 432 RGVEIGQVFQLGLKYSHAMGLKVLNKNGQAVPVWMGCYGIGVSRVMSCIAETHHDDKGLI 491

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
           WP ++AP ++ L+     D+    A + ++ +L   G +V +DD +    G +F  ++LL
Sbjct: 492 WPAAIAPAQVHLVATGKDDRAFHIADDLLH-QLEGEGIEVLYDDRLKVSPGVKFKDSELL 550

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL ++VG   V++  VEI++R +G  + + LE+  +
Sbjct: 551 GMPLVLVVGRDAVNNGTVEIRNRRSGQVQIVPLEQAFH 588


>gi|305681315|ref|ZP_07404122.1| proline--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659520|gb|EFM49020.1| proline--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 666

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 19/249 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  ++REE 
Sbjct: 86  RLSSLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLRKIEKVVREEM 145

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L S + + ++ R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 146 DNIGAQELLFPALLSREPYEQTRRWTEYGDNLFRLKDRKGNDMLLGPTHEEMFARQVKDM 205

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY     +Y
Sbjct: 206 FTSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEQSYLAHRAAY 265

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-------------------TQVF 222
             IF RL L+    +A SG +GG  S EF+ ++  GE                   TQ  
Sbjct: 266 QAIFDRLNLEYAICKATSGAMGGSASEEFLAISPNGEDTFVRATEGDYAANVEAVTTQPG 325

Query: 223 CSKDFMDFP 231
            ++DF + P
Sbjct: 326 TTRDFTNLP 334



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ + V    RGIE+GHIF  G KY+           GK     MGSYGIG  R+V 
Sbjct: 491 DPAPDGQGVLTLERGIEIGHIFQLGRKYTEVFDVQILDEHGKRTIPTMGSYGIGISRLVG 550

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD  G+ WP  VAP+++ ++ +   D+    A + I A+L   G +V +DD  +
Sbjct: 551 VIAEQHHDDNGLNWPVEVAPYQVHVV-VANKDKAALAAGDDIVAQLDATGVEVLFDDRPK 609

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  ++LLG P  V++G  F S+  VE++ R
Sbjct: 610 VSPGVKFKDSELLGMPYIVVLGRSF-SNGIVELRIR 644


>gi|38234063|ref|NP_939830.1| prolyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|81829888|sp|Q6NGM7|SYP_CORDI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|38200325|emb|CAE50010.1| prolyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 585

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  V  ++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGVYTWLPLGLRTLRKVETVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + + ++ R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQELLFPALLPREPYEQTHRWTEYGDSLFRLKDRKGGDYLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD++  G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMSDAGLEDSYQRHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RI  RLG++ +   A SG +GG  S EF+ ++D GE
Sbjct: 184 QRILDRLGVEYVICAATSGAMGGSASEEFLAVSDNGE 220



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 83/156 (53%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE +     ARGIEVGHIF  G KY+           GK     MGSYGIG  R++A
Sbjct: 410 DPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDESGKRAIPTMGSYGIGVSRLMA 469

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD  G+ WP  VAP+++ ++ +   D+   +A + + A L   G +V +DD  +
Sbjct: 470 VLAEQRHDETGLNWPLEVAPYQVHVV-VANKDKEAIEAGDALVAALDSHGIEVLFDDRPK 528

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  A+LLG P  V++G  F  D  +E++ R
Sbjct: 529 VSPGVKFKDAELLGMPFVVVLGRAF-KDGNIELRER 563


>gi|309809554|ref|ZP_07703412.1| proline--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|308170226|gb|EFO72261.1| proline--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
          Length = 483

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 130/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L N   II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRNAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 47/73 (64%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI WP
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFWP 466

Query: 342 DSVAPFKISLINI 354
             VAPF+I +I +
Sbjct: 467 KEVAPFEIHIIQM 479


>gi|229820980|ref|YP_002882506.1| prolyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566893|gb|ACQ80744.1| prolyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 586

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ FL  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L  V AI+REE + 
Sbjct: 2   SRLFLRTLREDPVDAEVDSHRLLVRAGYIRRAAPGIYTWLPLGLRVLARVEAIVREEMDA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  SGR+ +YG+ + RL DR +   +  PTHEE+ T + +    
Sbjct: 62  AGAQEVHFPALLPREPYEASGRWTTYGQGIFRLKDRREGDYLLAPTHEEMFTLLVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+     + SY+    +Y R
Sbjct: 122 SYKDLPLTLYQIQTKYRDEARPRAGLLRGREFIMKDAYSFDVDLARFERSYDAQRHAYQR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLGL+ + ++A SG +GG  S EF+     GE
Sbjct: 182 IFDRLGLEYVIVKASSGLMGGTRSEEFLSPCAIGE 216



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 6/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  GT +S  +  T    +GK     MGSYG+G  R VAA+ E+ HD +G+
Sbjct: 418 ARGIEIGHIFDLGTTFSDALGLTVLDENGKAIVPTMGSYGVGVSRAVAALAETHHDERGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  VAP ++ ++     D V   A E   A  ++   DV  DD  +   G +FA  +L
Sbjct: 478 TWPVHVAPAQVHIVATGKDDAVFAAAEELGAALTARR-IDVLLDDRRKVSAGVKFADGEL 536

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LG P+ V+VG + ++D  +E++ R + +RED+   EV   A H
Sbjct: 537 LGMPVIVVVG-RGLADGTIEVRLRASDLREDV---EVARAADH 575


>gi|223984654|ref|ZP_03634777.1| hypothetical protein HOLDEFILI_02073 [Holdemania filiformis DSM
           12042]
 gi|223963395|gb|EEF67784.1| hypothetical protein HOLDEFILI_02073 [Holdemania filiformis DSM
           12042]
          Length = 566

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 143/226 (63%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+EN +D +  S  L++R GMI + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MRLSQSFFTTLRENVKDEDSVSGNLLVRAGMIKKSSAGVYMYLPLGYKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G+ E+ +P L   +++V SGR D++G  M  L DR +K+ + GPTHEE+       
Sbjct: 61  MDQAGSQELLMPALIPEEVYVASGRRDNFGSSMFSLKDRFNKSYVLGPTHEELFAVAAGM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF  YQ Q K+RDE RPR+G++R REF+MKDAYSFD    G   +Y KMF +
Sbjct: 121 KIRSYKDMPFNLYQFQTKYRDEARPRYGLIRVREFIMKDAYSFDKDEAGMDVAYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
           Y R F R+ +    +RA++G +GG LS EF  + + GE   V C +
Sbjct: 181 YKRAFDRMHMDYKIVRADTGVMGGLLSEEFQAVTEIGEDVLVLCDQ 226



 Score =  119 bits (298), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 5/188 (2%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           E + A Y  T+DV      D+ P    K V  +GIE+G+ F  GTKY+  M   +   + 
Sbjct: 371 EDFKADY--TADVRQIMEGDTCPICGGKIVFKKGIEIGNTFKLGTKYAQAMDLEYLDQEN 428

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K + V MGSYGIG  R +AA+ E   D  G+ WP ++AP+ ++++ I   D+    A E+
Sbjct: 429 KLNPVWMGSYGIGIGRCMAALAEQHSDEHGLCWPINIAPYPVAIVVIAKKDEQQMAAAEQ 488

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA+L   G DV  DD  E+ G +F   DL+G P+++ VG K + D  VE+K R     E
Sbjct: 489 LYAQLQAAGVDVMLDDRDERPGVKFKDMDLIGTPIRLTVGKK-IGDGLVEMKLRKAEKAE 547

Query: 428 DMSLEEVI 435
           D+S++ V+
Sbjct: 548 DISIDNVV 555


>gi|224283879|ref|ZP_03647201.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287860|ref|YP_003939118.1| prolyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251796|gb|ADO53544.1| prolyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 599

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 138/215 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE + 
Sbjct: 2   STMFLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREEIDG 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + +    
Sbjct: 62  IGAQEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGAYER 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 182 IFQRLDLKYVPVFAMSGPMGGSASEEFLAPMAIGE 216



 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD +G+ 
Sbjct: 431 RGVEIGQVFQLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAETHHDERGLA 490

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    DA EK+ A L + G +V +DD  +   G +F  A+L+
Sbjct: 491 WPAVIAPAQVHVVAT-GKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGVKFKDAELI 549

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +EI++R
Sbjct: 550 GVPLIAVAGRDTVNNGTIEIRNR 572


>gi|293401596|ref|ZP_06645738.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304854|gb|EFE46101.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 563

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 150/253 (59%), Gaps = 10/253 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F   ++EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSFFYTIRENAKDEDSVSGNLLVRAGMIKKSSSGIYMIMPMGKRVLQKIETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +P L   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDATGAQELLMPVLIPEEVYEKSGRREAFGANMFALKDRYQKRYVMGPTHEELFTIAATM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+  E    SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDVDEESMHVSYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  RLGL    ++A++G +GG LS EF  +   GE          D  +  E+ +F 
Sbjct: 181 YKKIMERLGLTYKIVKADTGAMGGSLSEEFQAITPIGE----------DVVVGCEHCNFS 230

Query: 241 DIISLNSIVEQWT 253
             + +  +V+Q +
Sbjct: 231 SNLEITEVVDQAS 243



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 1/155 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIEVG+ F  GTKY+  +   ++    K H VQMG YG G  R +AA++E  +D  GI
Sbjct: 400 AKGIEVGNTFKLGTKYAESLGLEYQDETNKLHPVQMGCYGFGLGRAMAAIVEQHNDASGI 459

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP++++++ +   D+        +Y  LS  G DV  DD  E+ G +F   +L+
Sbjct: 460 IWPASVAPYQVAIVVVAIKDEEQMRVATALYEELSAAGIDVVLDDRKERPGVKFKDMELI 519

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G P ++ VG   V D KVE + R     E+  + E
Sbjct: 520 GIPYRITVGRGAV-DGKVEFRARTASENEEWLISE 553


>gi|296117670|ref|ZP_06836254.1| proline--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969401|gb|EFG82642.1| proline--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 585

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/283 (37%), Positives = 159/283 (56%), Gaps = 21/283 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P +AE+ SHKL++R G + + + GIYSWLPLG + L  +  ++REE 
Sbjct: 4   RLSELFLRTLREDPAEAEVPSHKLLVRAGYLRRAAPGIYSWLPLGLRTLRKIEDVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQELLFPALLPREPYELTDRWTEYGDNLFRLKDRKGADMLLGPTHEEMFAQTVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD++ EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFIMKDSYSFDMSDEGLDKSYARHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD--------FMDFPIP 233
            +IF RLG++    +A SG +GG  S EF+ +++ GE     + D         +  P+P
Sbjct: 184 QKIFDRLGIEYAICQATSGAMGGSASEEFLAVSEVGEDTFVRATDGDYAANVEAVVTPVP 243

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           +E  D+ ++            P A   D  + +  D+L E  R
Sbjct: 244 AE-IDYSNL------------PEAKEYDTPDSETIDTLVEWAR 273



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           +   S+VH     D  PE +      RGIE+GHIF  G KY+          +GK     
Sbjct: 399 FVEASEVHE---GDPAPEGQGTLTLKRGIELGHIFQLGRKYTQAFDVQILDENGKRAIPT 455

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R++A + E  HD KG+ WP  VAP+++  + +   D+    A  ++   L 
Sbjct: 456 MGSYGIGVSRMMAVLAEQRHDEKGLNWPLDVAPYQVH-VAVANKDEDATKAGNELVEALD 514

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           K G +V +DD  +   G +F  A+LLG P   I+G  F  D  +E++ R
Sbjct: 515 KAGVEVLFDDRPKVSPGVKFKDAELLGMPYCAILGRSF-KDGIIELRIR 562


>gi|323356826|ref|YP_004223222.1| prolyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323273197|dbj|BAJ73342.1| prolyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 600

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +FL  L+E+P DAE+ASH+L++R G I +++ GI++WLPLG K    +  ++REE 
Sbjct: 6   RLSNFFLRTLREDPSDAEVASHRLLVRAGYIRRNAPGIFAWLPLGLKVKAKIETVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR++ YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 66  ANAGAFEVHFPALLPREPYEVTGRWEEYGDALFRLQDRKGADYLLAPTHEEMFTLLVKDL 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 126 YSSYKDLPLTIYQIQDKYRDEARPRAGLLRGREFTMKDAYSFDATDAGLNASYQAQRDAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL+ + + A++G +GG  S EF+     GE
Sbjct: 186 ERIFTRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGE 222



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+E+GH+F  G KY+  +       +GK   V MGSYGIG  R++A + E ++D KG+
Sbjct: 440 ARGMEIGHVFQLGRKYAEALGLKVLDENGKLATVTMGSYGIGVTRILAIIAELNNDEKGL 499

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           IWP SVAPF + ++     D    +  E++ A L   G DV +DD  +   G +F  A+L
Sbjct: 500 IWPASVAPFDVHVVA-TGRDAAAFELAEQVSADLEAAGLDVLYDDRPKVSPGVKFGDAEL 558

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G P  +IVG +  ++ +VE+  R TG RE + + + +
Sbjct: 559 VGIPRILIVG-RGAAEGQVELWDRRTGERETLPVADAL 595


>gi|320096236|ref|ZP_08027820.1| proline--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976817|gb|EFW08576.1| proline--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 594

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 138/215 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +R
Sbjct: 6   STLFLRTLREDPADAEVNSHKLLVRAGYIRRAAPGIYTWLPLGLRTLRKIEGIVREEMDR 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L  A+ +  + R++ YG  + +LADR     +  PTHEE+ T + +    
Sbjct: 66  MGAQEVHFPGLIPAEPYKATNRWEDYGPTLFKLADRKGGDYLLAPTHEEMFTLLVKDMYS 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G + SY     +Y R
Sbjct: 126 SYKDLPTTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDEAGLEASYQAERDTYER 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLGL+ + + A SG +GG  S EF+  +  GE
Sbjct: 186 IFTRLGLEYVIVSAMSGAMGGSRSEEFLHPSPIGE 220



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 51/81 (62%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G+KY+  +  +    +GK   V MGSYGIG  RV+AA+ E++ D KG+ 
Sbjct: 426 RGIEIGHIFQLGSKYAEALGLSVLDENGKSRVVTMGSYGIGVTRVMAALAEANCDDKGLS 485

Query: 340 WPDSVAPFKISLINIKAHDQV 360
           WP  +APF + ++     + V
Sbjct: 486 WPAGIAPFDVHVLATGKDNAV 506


>gi|134102383|ref|YP_001108044.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915006|emb|CAM05119.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 574

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/212 (45%), Positives = 134/212 (63%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           FL  L+E+P DAE+ SH+L++R G + +   GIYSWLPLG + L N+  I+R+E +  GA
Sbjct: 2   FLRTLREDPADAEVPSHRLLVRAGYVRRIGPGIYSWLPLGLRVLRNIEEIVRQEMDAIGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   +    SY+
Sbjct: 62  QEIHFPALLPKEPYEATNRWTEYGPNLFRLKDRKGGDYLLGPTHEELFTLTVKGEYSSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           + P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG  +SY     +Y+RIF 
Sbjct: 122 DYPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDDEGLTNSYRLHRDAYIRIFD 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           R+GL+ + + A SG +GG  S EF+  A TGE
Sbjct: 182 RVGLRYVIVAATSGAMGGSASEEFLAEAPTGE 213



 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E   V+ARGIE+GHIF  G KY+   S    G DGK   + MGSYG+G  R+VAA+ E S
Sbjct: 405 EGTLVAARGIEIGHIFQLGRKYADAFSLDALGQDGKPKRITMGSYGVGVSRMVAAIAEQS 464

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD  G++WP  VAP  + ++ I   D+  R+  E++ A L   G  V  DD     G +F
Sbjct: 465 HDELGLVWPREVAPADVHVV-IAGKDESVREGAERLAADLDAAGVRVLLDDRNASPGVKF 523

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           A A+L+G P  ++VG K ++   VE+K R +G RE++ ++  + +
Sbjct: 524 ADAELVGVPTILVVG-KGLAKGVVEVKDRRSGDREEVPVDGAVEH 567


>gi|169630222|ref|YP_001703871.1| prolyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|226701313|sp|B1MD96|SYP_MYCA9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169242189|emb|CAM63217.1| Prolyl-tRNA synthetase ProS [Mycobacterium abscessus]
          Length = 580

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/223 (43%), Positives = 138/223 (61%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+++P DAE+ SHKL++R G +   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RLSELFVRTLRDDPADAEVPSHKLLIRAGYVRPVAPGVYSWLPLGLRVLRKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L     +  + R+  YG  + RL DR D  M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRAPYETTNRWTEYGDSLFRLKDRRDNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQ+Q K+RDE RPR G++R REF+MKD+YSFD + +G K +Y+    +Y
Sbjct: 124 YSSYKDFPVILYQVQTKYRDEARPRAGILRGREFVMKDSYSFDTSDDGLKAAYHAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RLGL  + + A SG +GG  S EF+  + TGE T V C
Sbjct: 184 QRIFGRLGLDYVIVAATSGAMGGSASEEFLAESPTGEDTFVRC 226



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIE+GHIF  G KY+   +    G +GK   +  GSYGIG  R+VA V E  HD  
Sbjct: 416 VSARGIEIGHIFQLGRKYTDAFTVDVLGENGKPVRLTQGSYGIGVSRLVAVVAEQQHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +V+PF + ++ I   D   R   E++ A L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPSAVSPFDVHVV-IANKDDAARAGAEELAAELDRLGHEVLLDDRTASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LLG P  V++G  + +D  +E+++R TG  + +++ + +
Sbjct: 535 LLGVPWIVVIGRGW-ADGTIELRNRFTGETQPIAVTDAV 572


>gi|325972766|ref|YP_004248957.1| prolyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324028004|gb|ADY14763.1| Prolyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 588

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+E P  A+   ++ +LR G I Q   GI+S LP G  A   +  IIR+E
Sbjct: 1   MRMSRLFSKTLREAPNGADSKGYEYLLRAGFIRQLGAGIFSLLPFGFNATKKIEQIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +  AD+W E+GRY S  KEM R +DR  + M+   THEE +TD+ R 
Sbjct: 61  MNAIGGQEILMPLVNPADIWKETGRYYSIDKEMSRFSDRVGRDMVLAMTHEEAVTDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RD+ RPR G++R REF MKD+YSFD+  EG    Y   + +
Sbjct: 121 EIDSYKRLPLLVYQIQTKWRDDPRPRAGLIRVREFTMKDSYSFDVDQEGLDAQYAAHYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RIF R GL  I + A+SG +GG +SHE++ L+  GE T + C
Sbjct: 181 YFRIFSRCGLPVIVVGADSGMMGGKISHEYMYLSSIGEDTIITC 224



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 104/176 (59%), Gaps = 7/176 (3%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ +     S PE  +   S++G+EVG+IF   T+YS  M+ +++   G    V MGS
Sbjct: 387 VADIASAAAGYSCPECSKPLSSSKGVEVGNIFQLNTRYSESMNCSYQDEGGLRKPVIMGS 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R++A + E+  D +G+  P SVAP ++ L+++    ++     E+IY +LS  G
Sbjct: 447 YGIGVGRLLACLAENYSDEQGLSLPISVAPMQVHLVSLVKDAEI----GEQIYNKLSDAG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +V +DD  E  G +FA ADL+G P+++ +G++ + + KVE+K R   + E  S E
Sbjct: 503 IEVLYDDRKESAGVKFADADLIGLPIRITLGNRSLKEGKVEVKLR-RNLEESFSFE 557


>gi|293189858|ref|ZP_06608572.1| proline--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292821273|gb|EFF80218.1| proline--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 602

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 138/221 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE + 
Sbjct: 6   STFFLRTLREDPADAEVNSHKLLVRAGYIRRSAPGIYTWLPLGLRTLRKIEDIVREEMDA 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +    
Sbjct: 66  MGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLNDRKGGDYLLAPTHEEMFTLLVKDMYS 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY     +Y R
Sbjct: 126 SYKDLPATLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDDEGLNASYQAERDTYER 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           IF RLGL+ + + A SG +GG  S EF+  +  GE     S
Sbjct: 186 IFQRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVAS 226



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++ D KG+ 
Sbjct: 434 RGIEIGHIFQLGRKYAKALGLTVLDENGKTQVVTMGSYGIGVTRVMAALAEANCDDKGLS 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +APF + ++     D+V   A + +   L   G DV  DD  +   G +F   +L+
Sbjct: 494 WPAQIAPFDVHVLATGKGDEVFETA-QSLGEELDAAGLDVLVDDRRKVSAGVKFKDYELV 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  ++VG + ++DS+VEI+ R TG    + +EE +
Sbjct: 553 GVPFGLVVG-RSLADSEVEIRVRATGETIVLPVEEAV 588


>gi|154509145|ref|ZP_02044787.1| hypothetical protein ACTODO_01666 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798779|gb|EDN81199.1| hypothetical protein ACTODO_01666 [Actinomyces odontolyticus ATCC
           17982]
          Length = 602

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 138/221 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE + 
Sbjct: 6   STFFLRTLREDPADAEVNSHKLLVRAGYIRRSAPGIYTWLPLGLRTLRKIEDIVREEMDA 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +    
Sbjct: 66  MGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLNDRKGGDYLLAPTHEEMFTLLVKDMYS 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY     +Y R
Sbjct: 126 SYKDLPATLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDDEGLNASYQAERDTYER 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           IF RLGL+ + + A SG +GG  S EF+  +  GE     S
Sbjct: 186 IFQRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVAS 226



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 3/157 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++ D KG+ 
Sbjct: 434 RGIEIGHIFQLGRKYAKALGLTVLDENGKTQVVTMGSYGIGVTRVMAALAEANCDDKGLS 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +APF + ++     D+V   A + +   L   G DV  DD  +   G +F   +L+
Sbjct: 494 WPAQIAPFDVHVLATGKGDEVFETA-QSLGEELDAAGLDVLVDDRRKVSAGVKFKDYELV 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  ++VG + ++D  VEI+ R TG    + +EE +
Sbjct: 553 GVPFGLVVG-RSLADGDVEIRVRGTGETIVVPVEEAV 588


>gi|227497547|ref|ZP_03927775.1| proline--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226833001|gb|EEH65384.1| proline--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 614

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 136/215 (63%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  F+  L+E+P DAE+ASHKL++R   I + + GIY+WLPLG   +  + AI+REE NR
Sbjct: 6   STAFIRTLREDPADAEVASHKLLVRASYIRRTAPGIYTWLPLGLAVVRKIEAIVREEMNR 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L  A+ +  + R+D YG  +  L DR     +  PTHEE+ T + +    
Sbjct: 66  MGGQEVHFPALLPAEPYKATQRWDEYGPTLFTLQDRKGGDYLLAPTHEEMFTLLAKDMFS 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY +   +Y R
Sbjct: 126 SYKDLPATLYQIQTKYRDEARPRAGLIRGREFIMKDSYSFDVDDAGLDASYQRHRDAYER 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RLGL+ +P+ A +G +GG  S EF+  +  GE
Sbjct: 186 IFRRLGLEYVPVNAMAGAMGGSHSEEFLHPSPIGE 220



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 85/148 (57%), Gaps = 2/148 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++HD +G+ 
Sbjct: 439 RGIEVGHIFALGRKYAQALGFTVLDENGKARVVTMGSYGIGVSRVMAALAEANHDERGLA 498

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP+ + ++     +QV   A   +   L   G +V +DD  +   G +FA ++LL
Sbjct: 499 WPIQVAPYHVQVLATGKDEQVFATA-HALARELDAAGLEVLYDDRRKVSAGVKFADSELL 557

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           G P  V+VG     +  VEI+ R +G R
Sbjct: 558 GVPFTVVVGRDLAKEGTVEIRDRRSGER 585


>gi|294786669|ref|ZP_06751923.1| proline--tRNA ligase [Parascardovia denticolens F0305]
 gi|294485502|gb|EFG33136.1| proline--tRNA ligase [Parascardovia denticolens F0305]
          Length = 601

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/271 (39%), Positives = 152/271 (56%), Gaps = 6/271 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG K L+ + AIIREE
Sbjct: 10  LRMSTLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLKVLNKIEAIIREE 69

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + + 
Sbjct: 70  INALGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKD 129

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K SY     +
Sbjct: 130 MYTSYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKSYLAERAA 189

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIFHRL +  + + A SGP+GG  S EF+     GE     +     + + +  T   
Sbjct: 190 YERIFHRLAVDYVIVHAVSGPMGGSESEEFLAPLPIGEDTFALAPSGKAWNVEALTTPAM 249

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           D +  +        P A   D  +    DSL
Sbjct: 250 DPVDYSQ------TPAATVVDTPDSPTIDSL 274



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  M       +GK   V MG YGIG  RV++ + E+ HD KG+I
Sbjct: 436 RGVEIGQVFQLGLKYSKAMGLNVLNQNGKAVPVWMGCYGIGVSRVMSCIAEAHHDDKGLI 495

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP SVAP ++ LI     DQ   D  E +   L K   +V +DD  +   G +F  ++LL
Sbjct: 496 WPLSVAPAQVHLIAT-GKDQKAYDLAESLLGDLEKADVEVLYDDRAKMSPGVKFKDSELL 554

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G P+ V+VG   +SD  VEI++R TG ++ + L++
Sbjct: 555 GLPMIVVVGRDTLSDGTVEIRNRATGEKDVVPLDQ 589


>gi|302206413|gb|ADL10755.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330969|gb|ADL21163.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276656|gb|ADO26555.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           I19]
          Length = 585

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 135/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSALFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLKKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DGIGAQELLFPALLPREPYQATNRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T +G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDDGLESSYQRHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RI  RLG++     A SG +GG  S EF+ +++ GE
Sbjct: 184 QRILDRLGVEYAICSATSGAMGGSASEEFLAISENGE 220



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE +     ARGIEVGHIF  G KY+          +GK     MGSYGIG  R++A
Sbjct: 410 DPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGVSRLMA 469

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP  VAPF + ++ +   D    +A + + + L   G +V +DD  +
Sbjct: 470 VLAEQRHDEKGLNWPIEVAPFAVHVV-VANKDTAAIEAGDALVSELDAAGVEVLFDDRPK 528

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  A+LLG P  V++G  F  + KVE++ R
Sbjct: 529 VSPGVKFKDAELLGMPYVVVLGRSF-KEGKVELRVR 563


>gi|283769476|ref|ZP_06342372.1| proline--tRNA ligase [Bulleidia extructa W1219]
 gi|283103744|gb|EFC05130.1| proline--tRNA ligase [Bulleidia extructa W1219]
          Length = 561

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/226 (42%), Positives = 142/226 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    +   L+EN +D +  S  L++R GMI + S G+Y  LP+G K  + + +II+EE
Sbjct: 1   MRLKNSYFFTLRENAKDEDSQSSNLLVRAGMIKKSSTGVYMILPMGLKVFNKIKSIIQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+ +P+L   +++V SGR + +G +M  L DR ++  + GPTHEE+     + 
Sbjct: 61  MEAIHCQELLMPSLIPEEVYVASGRREGFGSDMFSLKDRKNQNYVLGPTHEELFATAAKL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF+ YQIQ KFRDE RPR+G++R REF MKDAYSFD    G   SYNK F +
Sbjct: 121 KIRSYKDMPFSIYQIQTKFRDEPRPRYGLIRVREFQMKDAYSFDANEAGMDSSYNKQFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF RLGL  + ++A++G +GG LS EF  L+  GE  +  ++D
Sbjct: 181 YKNIFDRLGLNYVVVKADTGVMGGLLSEEFQALSPVGEDTLALNED 226



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG+ F  GTKYS  M   +  A+ +  YV MG YGIG  R +AA++E ++D  GI 
Sbjct: 401 KGIEVGNTFKLGTKYSKAMDLQYSNANNQLEYVWMGCYGIGPARAMAALVEQNYDENGIN 460

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++AP++ S+  I   D         +Y +L K G DV  DD  E+ G +F   DL+G
Sbjct: 461 WPKNLAPYRCSITIISMKDDQQIQVANDLYDQLRKAGIDVLLDDRDERPGVKFKDMDLIG 520

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            P Q+ VG K V D +VEIK R   +++ +S++ V++Y + +
Sbjct: 521 IPTQITVG-KNVVDGQVEIKER-GHMKQSISIDSVLDYLTQK 560


>gi|313141032|ref|ZP_07803225.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133542|gb|EFR51159.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 596

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 137/212 (64%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE +  GA
Sbjct: 2   FLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREEIDGIGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + +    SY+
Sbjct: 62  QEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKDMYSSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +Y RIF 
Sbjct: 122 DLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGAYERIFQ 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 182 RLDLKYVPVFAMSGPMGGSASEEFLAPMAIGE 213



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD +G+ 
Sbjct: 428 RGVEIGQVFQLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAETHHDERGLA 487

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    DA EK+ A L + G +V +DD  +   G +F  A+L+
Sbjct: 488 WPAVIAPAQVHVVAT-GKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGVKFKDAELI 546

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +EI++R
Sbjct: 547 GVPLIAVAGRDTVNNGTIEIRNR 569


>gi|117928726|ref|YP_873277.1| prolyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|152074742|sp|A0LV31|SYP_ACIC1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117649189|gb|ABK53291.1| prolyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
          Length = 583

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 137/223 (61%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ SH+L++R G I + + GIYSWLPLG   L  +  I+R+E 
Sbjct: 4   RMSKLFVRTLREDPADAEVPSHRLLVRAGYIRRVAPGIYSWLPLGYAVLRKIEEIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L   +++  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  LHIGGQEVHFPALIPREIYEASGRWNEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   +QIQ K+RDE RPR G++R REF+MKD+YSFDL   G   SY     +Y
Sbjct: 124 YSSYKDYPVILFQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDAGLAASYTAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFC 223
            RIF RLGL+   + A SG +GG  S EF+ + + GE   V+C
Sbjct: 184 RRIFDRLGLRYRIVSAVSGAMGGSASEEFLAVTEVGEDAFVYC 226



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+GIE+GHIF  G KY+        G DG+   + MGSYGIG  R VAA+ E  HD  G+
Sbjct: 419 AQGIEIGHIFQLGRKYTDAFELDALGPDGRPIRITMGSYGIGVSRAVAAIAEQCHDDAGL 478

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADL 397
           IWP SV+P  + ++     +Q      E+  A L   G DV  DD +    G +FA A+L
Sbjct: 479 IWPRSVSPADVHVVIAGKGEQ--EKLAEEFAAALDTAGLDVLLDDRVDASAGVKFADAEL 536

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G P   +VG +  +   VE++ R +G R +++L + +
Sbjct: 537 IGIPSIAVVG-RGAARGVVEVRDRGSGERRELALTDAV 573


>gi|311739686|ref|ZP_07713521.1| proline--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305502|gb|EFQ81570.1| proline--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 589

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++R+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRTLRKIEDVVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  M+ GPTHEE+     +  
Sbjct: 64  DAIGGQEMLFPALLPREPYEKTNRWVEYGDNLFRLKDRKNADMLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYGRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             IF+RL +     +A SG +GG  S EF+ +++ GE
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSEVGE 220



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PEN       RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A
Sbjct: 414 DLAPENHGTLTLERGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSYGIGITRMLA 473

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP +VAP+++  + +   D    +A +K+   LS  G +V +DD  +
Sbjct: 474 VLAEQRHDDKGLNWPVAVAPYQVH-VAVANKDAAAMEAGDKLVEELSAKGLEVLFDDRPK 532

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  A+LLG P   I+G  F  + K+E++ R
Sbjct: 533 VSPGVKFKDAELLGMPFVAILGRAF-KEGKIELRIR 567


>gi|172040525|ref|YP_001800239.1| prolyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|226699134|sp|B1VGB6|SYP_CORU7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171851829|emb|CAQ04805.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 592

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 137/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G I + + G+YSWLP+G + L  V  ++R E 
Sbjct: 4   RMSSLFLHTLRDDPADAELASHKLLVRAGYIRRVAPGVYSWLPMGLRVLRKVENVVRREM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+D YG E+ RL DR +   + GPTHEE+ T + +  
Sbjct: 64  DAIGGQELMFPALLPKEPYEVTRRWDEYGPELFRLKDRKEADYLLGPTHEELFTWLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSF++T EG   SY     +Y
Sbjct: 124 LNSYKDFPKVLYQIQTKYRDEARPRAGILRGREFVMKDSYSFNMTDEGLDESYRLHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF  LG++ +   A SG +GG  S EF+ +A  GE
Sbjct: 184 QRIFDALGIEYVICYATSGAMGGSASEEFLAVAADGE 220



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 5/171 (2%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ K V   +RGIE+GHIF  G KY+          +G+     MGSYGIG  R++A
Sbjct: 416 DPSPDGKGVLTLSRGIEIGHIFQLGRKYTEAFDVQILDENGRRTVPTMGSYGIGVSRLLA 475

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            V E  HD KG+ WP S+AP+ + ++ I   D+   +A  ++   LS  G +V +DD  +
Sbjct: 476 VVAEQMHDEKGLRWPRSIAPYDVHVV-IANKDEAAGEAARELAEALSDAGLEVLFDDRPK 534

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              G +F  ++LLG P  V+VG  F ++ KVE++ RL   R ++   + ++
Sbjct: 535 VSPGVKFKDSELLGMPQVVVVGRGF-AEGKVELRDRLNDERSEIDYADAVD 584


>gi|220919170|ref|YP_002494474.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254782880|sp|B8J9M0|SYP_ANAD2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219957024|gb|ACL67408.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 574

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 140/221 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  V AI+REE
Sbjct: 4   VRYSQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLAKVEAIVREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E  +P L  A++W ESGR+D  G  M RL DR       G THEE+ T + R 
Sbjct: 64  MDAIGGQEFYLPALHPAEIWKESGRWDVMGDNMFRLKDRKGGDYCLGMTHEEIFTAVARD 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +
Sbjct: 124 ELRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDRSYEDQRRA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y +IF R GL  + ++A SG +GG  S EF+V  D GE  V
Sbjct: 184 YEKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTDAGEDLV 224



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 98/161 (60%), Gaps = 1/161 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +E+GHIF  GTKYS  M AT   A+GK   + MGSYGIG  R++AA IE  HD  GI+
Sbjct: 409 KALEIGHIFKLGTKYSESMKATVLDAEGKQVPIVMGSYGIGVERILAAAIELHHDDNGIV 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P ++APF  +++ +    ++ R A E++ A L K G +V +DD  E+ G +F  ADLLG
Sbjct: 469 FPMAIAPFHATVLTLGPEPEL-RKAAEEVVAALGKEGVEVLFDDRDERAGVKFKDADLLG 527

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            P+++ VG K ++   VE K R  G  E + + EV   A+ 
Sbjct: 528 IPIRIAVGKKGLAAGNVEWKLRKGGAVELVPVGEVARKAAE 568


>gi|255325212|ref|ZP_05366318.1| proline--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297777|gb|EET77088.1| proline--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 589

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++R+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRTLRKIEDVVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  M+ GPTHEE+     +  
Sbjct: 64  DAIGGQEMLFPALLPREPYEKTNRWVEYGDNLFRLKDRKNADMLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYGRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             IF+RL +     +A SG +GG  S EF+ +++ GE
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSEVGE 220



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PEN       RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A
Sbjct: 414 DLAPENHGTLTLERGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSYGIGITRMLA 473

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP +VAP+++  + +   D    +A +K+   LS  G +V +DD  +
Sbjct: 474 VLAEQRHDDKGLNWPVAVAPYQVH-VAVANKDAAAMEAGDKLVEELSAKGLEVLFDDRPK 532

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  A+LLG P   I+G  F  + K+E++ R
Sbjct: 533 VSPGVKFKDAELLGMPFVAILGRAF-KEGKIELRIR 567


>gi|227504819|ref|ZP_03934868.1| prolyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198669|gb|EEI78717.1| prolyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 591

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 133/217 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSNLFLRTLREDPADAEVLSHKLLVRAGYVRRAAPGVYTWLPLGLRTLTKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  EM  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEMLFPALLPREPYELTDRWTEYGDNLFRLKDRKGADMLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDEGLDESYMRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             IF+RL +     +A SG +GG  S EF+ ++  GE
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSPAGE 220



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 3/143 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A + E   D KG+ 
Sbjct: 429 RGIELGHIFQLGRKYTKAFDVQILDENGKRAVPTMGSYGIGVSRMMAVLAEQQADEKGLR 488

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAPF++  + +   D    +A +K+   L   G +V +DD  +   G +F  A+LL
Sbjct: 489 WPVDVAPFQVH-VAVANKDAAALEAGQKLVEDLDAAGIEVLFDDRPKVSPGVKFKDAELL 547

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P   I+G  F +D  +E++ R
Sbjct: 548 GMPFIAILGRSF-ADGIIELRIR 569


>gi|312871363|ref|ZP_07731459.1| proline--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872484|ref|ZP_07732553.1| proline--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312873339|ref|ZP_07733392.1| proline--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311091129|gb|EFQ49520.1| proline--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311092066|gb|EFQ50441.1| proline--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311093115|gb|EFQ51463.1| proline--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
          Length = 566

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPASIGE 218



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 8/164 (4%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E       I WP
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNSIFWP 466

Query: 342 DSVAPFKISLI--NIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             VAPF+I +I  N+K  +Q V     E+I++       DV +DD  E+ G +F  ADL+
Sbjct: 467 KEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSD----KYDVLYDDRNERPGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++IVG + VS+  VE+K        +MSL+ +  Y S   
Sbjct: 523 GAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKEL 565


>gi|23466273|ref|NP_696876.1| prolyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227546627|ref|ZP_03976676.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|81847214|sp|Q8G3N0|SYP_BIFLO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23327022|gb|AAN25512.1| prolyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227212944|gb|EEI80823.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291516313|emb|CBK69929.1| prolyl-tRNA synthetase, family II [Bifidobacterium longum subsp.
           longum F8]
          Length = 597

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 137/215 (63%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE N 
Sbjct: 2   STMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEING 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +    
Sbjct: 62  IGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAYER 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 182 IFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 216



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 431 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 490

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 491 WPSVIAPAAVHVVAT-GKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 549

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  +VG  +V+D  +E++ R
Sbjct: 550 GVPLVAVVGRDYVNDGTIELRDR 572


>gi|281206251|gb|EFA80440.1| prolyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 880

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 146/225 (64%), Gaps = 2/225 (0%)

Query: 3   RSKYFLPILQENPRDAE-IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RSK F+P+ ++ P D + + S  LM +TGMI + S G+Y  LPL  +AL+N+  II +E 
Sbjct: 342 RSKLFIPMQRDQPLDKDMLKSQLLMQKTGMIRRASLGMYMTLPLAHRALENLIKIIDQEM 401

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  ++S+P L S +LW ++GR++S G E++++ DR  +     PTHEE+ T +  + 
Sbjct: 402 SNIGGQKLSMPKLLSKELWEKTGRWESSGDELIKVKDRKGEEYCLAPTHEEIFTSMLANE 461

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             +  NLP   YQI  K+RDE+RPRFG++R REFLMKD YSFD +   ++ +YN +  +Y
Sbjct: 462 RIATNNLPMKLYQIGDKYRDEIRPRFGLLRGREFLMKDMYSFDKSVADAEETYNLVKTAY 521

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
            RIF RLG+    + A+SG IGG  SHEF ++ D GE T V CSK
Sbjct: 522 HRIFSRLGVNYACVEADSGNIGGSTSHEFQIITDVGEDTIVSCSK 566



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 8/171 (4%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS+P+ A  K ++G D  ++MG YGIG  R++AA++E+  D  GI+
Sbjct: 711 RGIEVGHIFRLGTKYSVPLKANIKNSEGVDVPMEMGCYGIGVSRLMAALVEAHKDLDGIV 770

Query: 340 WPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSK----VGCDVFWDDMGEQIGSQFA 393
           WP  VAP+K+ ++    +   +  R A E +Y  LSK        +  D +      +  
Sbjct: 771 WPIQVAPYKLIILPYATELETENLRKATE-LYDYLSKEPSLTNQIILEDRLDITFARRIK 829

Query: 394 VADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYASHRFS 443
            A ++G P  + V      D  V E++ R TG +   ++ E++ +   + S
Sbjct: 830 EATIIGVPYILFVTQSKTRDQDVYELEDRTTGEKSFFNMVELLYFFRFKLS 880


>gi|315604524|ref|ZP_07879587.1| proline--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313536|gb|EFU61590.1| proline--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 602

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 138/221 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE + 
Sbjct: 6   STFFLRTLREDPADAEVNSHKLLVRAGYIRRTAPGIYTWLPLGLRTLRKIEDIVREEMDA 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +    
Sbjct: 66  MGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLEDRKGGDYLLAPTHEEMFTLLVKDMFS 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+T  G   SY     +Y R
Sbjct: 126 SYKDLPTTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVTEVGLDASYQAERDTYER 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           IF RLGL+ + + A SG +GG  S EF+  +  GE     S
Sbjct: 186 IFTRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVAS 226



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  T     GK   V MGSYGIG  RV+AA+ E++ D +G+ 
Sbjct: 434 RGIEIGHIFQLGRKYAQALGLTVLDECGKTQVVTMGSYGIGVTRVMAALAEANCDERGLS 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +APF + ++     ++V   A   +   L   G DV  DD  +   G +F   +L+
Sbjct: 494 WPAQIAPFDVHVLATGKGEEVFATAA-SLGDELDVAGLDVLVDDRRKVSAGVKFKDFELV 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P  ++VG + ++D KVEI+ R TG
Sbjct: 553 GIPFGLVVG-RSLADGKVEIRVRATG 577


>gi|309805512|ref|ZP_07699557.1| proline--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165163|gb|EFO67401.1| proline--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 472

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI   
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFLA 466

Query: 342 DSVAPF 347
                F
Sbjct: 467 KRSCSF 472


>gi|227503402|ref|ZP_03933451.1| prolyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227075905|gb|EEI13868.1| prolyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 594

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 137/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + GIY+WLPLG +AL  +  ++R+E 
Sbjct: 9   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGIYTWLPLGLRALRKIEDVVRQEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  ++ GPTHEE+  +  +  
Sbjct: 69  DAIGGQEMLFPALLPREPYEKTNRWVEYGPNLFRLQDRKNADLLLGPTHEEMFANAVKDM 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD+  EG   SY +   +Y
Sbjct: 129 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMNDEGLDSSYARHRKAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             +F RL +     +A SG +GG  S EF+ L++ GE
Sbjct: 189 QNVFDRLEIDYAICKATSGAMGGSASEEFLALSEVGE 225



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N+   A  RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A
Sbjct: 419 DPAPDNQGTLALQRGIELGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGISRMLA 478

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP +VAP+++  + +   D    +A +K+   LS+ G +V +DD  +
Sbjct: 479 VLAEQRHDDKGLNWPVAVAPYQVH-VAVANKDAAAMEAGDKLVEELSQAGLEVLFDDRPK 537

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  A+LLG P   IVG  F  D  +E++ R
Sbjct: 538 VSPGVKFKDAELLGMPFVAIVGRAF-KDGIIELRIR 572


>gi|309807201|ref|ZP_07701175.1| proline--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308166422|gb|EFO68627.1| proline--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
          Length = 472

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI   
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFLA 466

Query: 342 DSVAPF 347
                F
Sbjct: 467 KRSCSF 472


>gi|309808806|ref|ZP_07702691.1| proline--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308167932|gb|EFO70065.1| proline--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 472

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI   
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFLA 466

Query: 342 DSVAPF 347
                F
Sbjct: 467 KRSCSF 472


>gi|302191444|ref|ZP_07267698.1| prolyl-tRNA synthetase [Lactobacillus iners AB-1]
          Length = 566

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 8/164 (4%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI WP
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFWP 466

Query: 342 DSVAPFKISLI--NIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             VAPF+I +I  N+K  +Q V     E+I++       DV +DD  E+ G +F  ADL+
Sbjct: 467 KEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSD----KYDVLYDDRNERPGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++IVG + VS+  VE+K        +MSL+ +  Y S   
Sbjct: 523 GAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKEL 565


>gi|325913484|ref|ZP_08175850.1| proline--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|325477253|gb|EGC80399.1| proline--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 566

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 8/164 (4%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI WP
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFWP 466

Query: 342 DSVAPFKISLI--NIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             VAPF+I +I  N+K  +Q V     E+I++       DV +DD  E+ G +F  ADL+
Sbjct: 467 KEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSD----KYDVLYDDRNERPGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++IVG + VS+  VE+K        +MSL+ +  Y S   
Sbjct: 523 GAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKEL 565


>gi|315653428|ref|ZP_07906350.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|315489353|gb|EFU78993.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 487

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 16  MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 76  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 136 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 196 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 233



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI   
Sbjct: 422 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFLA 481

Query: 342 DSVAPF 347
                F
Sbjct: 482 KRSCSF 487


>gi|329919866|ref|ZP_08276804.1| proline--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|328936956|gb|EGG33386.1| proline--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 566

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 8/164 (4%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI WP
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFWP 466

Query: 342 DSVAPFKISLI--NIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             VAPF+I +I  N+K  +Q V     E+I++       DV +DD  E+ G +F  ADL+
Sbjct: 467 KEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSD----KYDVLYDDRNERPGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++IVG + VS+  VE+K        +MSL+ +  Y S   
Sbjct: 523 GAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKEL 565


>gi|325911837|ref|ZP_08174241.1| proline--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|325476343|gb|EGC79505.1| proline--tRNA ligase [Lactobacillus iners UPII 143-D]
          Length = 566

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 8/164 (4%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E       I WP
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNSIFWP 466

Query: 342 DSVAPFKISLI--NIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             VAPF+I +I  N+K  +Q V     E+I++       DV +DD  E+ G +F  ADL+
Sbjct: 467 KEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSD----KYDVLYDDRNERPGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++IVG + VS+  VE+K        +MSL+ +  Y S   
Sbjct: 523 GAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKEL 565


>gi|309804213|ref|ZP_07698290.1| proline--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|312875784|ref|ZP_07735776.1| proline--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|308163616|gb|EFO65886.1| proline--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|311088688|gb|EFQ47140.1| proline--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 566

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 218



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 8/164 (4%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI WP
Sbjct: 407 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFWP 466

Query: 342 DSVAPFKISLI--NIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             VAPF+I +I  N+K  +Q V     E+I++       DV +DD  E+ G +F  ADL+
Sbjct: 467 KEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSD----KYDVLYDDRNERPGVKFNDADLI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++IVG + VS+  VE+K        +MSL+ +  Y S   
Sbjct: 523 GAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKEL 565


>gi|259501582|ref|ZP_05744484.1| proline-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|259167100|gb|EEW51595.1| proline-tRNA ligase [Lactobacillus iners DSM 13335]
          Length = 581

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 129/218 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 16  MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 76  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 136 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y +IF R G++  P+ A SG +GG  S EF   A  GE
Sbjct: 196 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGE 233



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 8/164 (4%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E      GI WP
Sbjct: 422 IEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFWP 481

Query: 342 DSVAPFKISLI--NIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             VAPF+I +I  N+K  +Q V     E+I++       DV +DD  E+ G +F  ADL+
Sbjct: 482 KEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSD----KYDVLYDDRNERPGVKFNDADLI 537

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+++IVG + VS+  VE+K        +MSL+ +  Y S   
Sbjct: 538 GAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKEL 580


>gi|118472270|ref|YP_886958.1| prolyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|302595855|sp|A0QVM0|SYP_MYCS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118173557|gb|ABK74453.1| prolyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 585

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 139/223 (62%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     GIYSWLPLG + L  +  ++R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRAVGPGIYSWLPLGLRVLRKIENVVRSEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L     +  + R+  YG  + RL DR +   + GPTHEE+ T   +  
Sbjct: 64  NAIGAQEILLPALLPRGPYETTNRWTEYGDTLFRLQDRRNNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+  +G K++Y +   +Y
Sbjct: 124 YSSYKDFPVILYQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDDGLKNAYYQHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RLG++ + + A SG +GG  S EF+  ++ GE T V C
Sbjct: 184 QRIFARLGVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRC 226



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 2/148 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            SARGIE+GHIF  G KY+   SA   G DGK   + MGSYGIG  R+VA + E  HD  
Sbjct: 420 TSARGIEIGHIFQLGRKYTDAFSADVLGEDGKPLRLTMGSYGIGVSRLVAVIAEQQHDQL 479

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP SVAPF + ++ +   D   R    ++ A L ++G +V +DD     G +F  A+
Sbjct: 480 GLRWPSSVAPFDVHVV-VANKDAGARAGAAELVADLDRLGHEVLFDDRQASPGVKFKDAE 538

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LLG P  V+VG  + +D  VE+++R TG
Sbjct: 539 LLGMPWIVVVGRGW-ADGVVELRNRFTG 565


>gi|46190981|ref|ZP_00120791.2| COG0442: Prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|317482435|ref|ZP_07941452.1| prolyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916095|gb|EFV37500.1| prolyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 594

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 136/212 (64%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE N  GA
Sbjct: 2   FLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEINGIGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +    SY+
Sbjct: 62  QEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMYSSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y RIF 
Sbjct: 122 DLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAYERIFQ 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 182 RLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 213



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 428 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 487

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 488 WPSVIAPAAVHVVAT-GKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 546

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  +VG  +V+D  +E++ R
Sbjct: 547 GVPLVAVVGRDYVNDGTIELRDR 569


>gi|37522094|ref|NP_925471.1| prolyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|81834313|sp|Q7NHL0|SYP_GLOVI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|35213093|dbj|BAC90466.1| prolyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 589

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 106/230 (46%), Positives = 141/230 (61%), Gaps = 8/230 (3%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIRE 59
           R S  F   L+E P +A   SHKL+LR G I     + G+Y++ PL Q+ L  V  I+RE
Sbjct: 3   RLSSSFFFTLREAPAEAVAVSHKLLLRAGFIRPLAGTAGLYAYGPLMQRVLQKVGRIVRE 62

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLAD-RNDKAMIYG--PTHEEVM 114
           E + TGA E     LQ A++W ESGR+  Y ++  M  L D + ++A  YG  PTHEE +
Sbjct: 63  EMDATGAQEALFCQLQPAEIWKESGRWTVYTQDGTMFTLKDGQGEQAREYGLGPTHEEAV 122

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            D  R+ + SY+ LPF  YQ+Q KFR+E RPRFG+MR REF+MKD YSF  TPE    +Y
Sbjct: 123 CDFVRASLNSYKQLPFHLYQVQTKFRNEKRPRFGLMRGREFIMKDGYSFHATPESLDETY 182

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
             M+ +Y  +F R GL    + A+SG IGG  SHEF+ L D GE T ++C
Sbjct: 183 RAMYRAYTNMFRRCGLDFRAVEADSGAIGGSGSHEFMALCDIGEDTILYC 232



 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 1/164 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           PE    SARG+E+GHIF  GTKYS PM   F    G+     MG YG+G  R+ AAV+E 
Sbjct: 410 PEATLQSARGVELGHIFKLGTKYSRPMQVLFADEAGELQPALMGCYGVGVSRLPAAVVEQ 469

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           SHD  GI+WP ++AP+++ L+      +  R A E++Y  L+  G D   DD  E+ G +
Sbjct: 470 SHDNDGILWPIAIAPYQVVLVPANVAVEAQRQAAEELYRSLTAAGIDTLLDDRPERAGVK 529

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           F  ADL+G PL+V +G    +   VEIK R  G  E + L E +
Sbjct: 530 FKDADLIGIPLRVTLGRDLEA-GLVEIKVRGGGAAEKVPLAEAL 572


>gi|241190576|ref|YP_002967970.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195982|ref|YP_002969537.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|240248968|gb|ACS45908.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250536|gb|ACS47475.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793563|gb|ADG33098.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9]
          Length = 605

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 137/218 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE
Sbjct: 5   LRMSTLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 125 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 185 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 222



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD KG+ 
Sbjct: 438 RGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPVWMGCYGIGVSRVLACIAETHHDDKGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     D+   +A E++   LS  G +V +DD  +   G +F  A+L+
Sbjct: 498 WPMNIAPAQVHVM-ATGKDEAAFEAAERLVDELSANGIEVLYDDRRKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+  + G   V++  +E++ R     E++S++ V
Sbjct: 557 GVPIIAVAGRDTVNNGTIEVRDRDGSNSENISVDSV 592


>gi|291457352|ref|ZP_06596742.1| proline--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381187|gb|EFE88705.1| proline--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 597

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 136/215 (63%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG K L+ +  IIREE N 
Sbjct: 2   STMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLKVLNKIEDIIREEING 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +    
Sbjct: 62  IGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGAYER 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 182 IFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 216



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 431 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 490

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D+   +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 491 WPSVIAPAAVHVVAT-GKDEKAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 549

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  +VG  +V+D  +EI+ R    +  +   E     + RF+
Sbjct: 550 GVPLVAVVGRDYVNDGTIEIRDRNGENKVAVPAAEAAGTLADRFA 594


>gi|149198845|ref|ZP_01875887.1| prolyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149138043|gb|EDM26454.1| prolyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 577

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 141/227 (62%), Gaps = 1/227 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK     ++E P+DA+ ASH  ++R G I   S GIY+ LPL ++    +  IIREE
Sbjct: 1   MRLSKLVGKRVKEAPKDAQSASHIFLMRGGYIRPVSTGIYTLLPLAKRMTTKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+ +P +  A++W ESGRYDS  + +LR  DRN K M+   THEE +  + R+
Sbjct: 61  MEAVDCQEIMMPVVNPAEIWQESGRYDSVDQSLLRFKDRNQKDMVLAMTHEEAVCHMART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE R R G++R REF MKDAYSF  + +     Y+++  +
Sbjct: 121 EITSYKQLPASVYQIQTKYRDEARARAGLIRVREFTMKDAYSFHDSEKCLSDYYDRVHQA 180

Query: 181 YLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y RIF R+GL   + + +++G IGG LSHEF+ ++D GE  +F S D
Sbjct: 181 YERIFERVGLSDCVSIESDAGMIGGSLSHEFMAISDIGEDTLFLSPD 227



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 88/162 (54%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG+IF  GTKYS  M   +   +GK     MG YGIG  R +A+V E  +D  G +
Sbjct: 407 KGIEVGNIFQLGTKYSDSMGVRYLDKNGKAQIPTMGCYGIGVGRALASVCEQRNDKWGPV 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+AP+++ +I +       ++  E++Y  L K G +V +DD   + G  F  ADL+G
Sbjct: 467 WPISIAPYQVHVIALTGGQPEIKEEAEELYKNLQKEGIEVIFDDRDPKPGFAFNDADLIG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            PL++I+  K ++    E K R    +E +   E   +  +R
Sbjct: 527 VPLRLIISKKSMAQDSYEFKTRDGSEKELIPKAEAFEFIVNR 568


>gi|312195504|ref|YP_004015565.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226840|gb|ADP79695.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 580

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/218 (40%), Positives = 140/218 (64%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ F+  L+E+P DAE A+H+L++R G + + + GIYS+LPLG + L  + A++R+E   
Sbjct: 14  SRTFIRTLREDPADAETANHRLLVRGGYVRKAASGIYSYLPLGLRVLRRIEAVVRQEMAA 73

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+ +P L   +LW  SGR+  YG  M R+ DR       GPTHEE++T +  + + 
Sbjct: 74  AGCQELLMPALMPRELWDRSGRWADYGDLMFRVVDRKGTEFCLGPTHEELITSLVANELG 133

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            +R+LP   +QIQ K+RDELRPR G++RSR+F+MKDAY+F    +  + +Y +M+ +Y R
Sbjct: 134 GHRDLPLRVFQIQTKYRDELRPRSGLVRSRDFVMKDAYTFHADEDSLRETYREMYAAYER 193

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +F R GL+   + A++G +GG  + EF+   + GE  V
Sbjct: 194 VFTRCGLRFRAVEAQAGEMGGGRNQEFMAPTEIGEDLV 231



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 6/180 (3%)

Query: 260 SDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +DV N +  D+ P++       R +E+GHIF  GT+YS+P+ ATF  A G +    MG Y
Sbjct: 395 ADVVNVRAGDASPDDSGPLTLERAVEIGHIFQLGTRYSVPLGATFLDAAGVERPALMGCY 454

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++ VIE  HD  GI WP  +AP+ + +I +    +V  D    +   L+ VG 
Sbjct: 455 GIGISRLMSVVIEQHHDEHGIRWPAELAPYDVQVIPLG--RRVDEDLVRSVADMLAGVGL 512

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V  DD  G   G +FA ADL+G P QV++G +  ++   E++ R      +++L E+ N
Sbjct: 513 EVLVDDRSGASAGVKFADADLIGAPFQVVLGRR-AAEGIAELRTRDRSTVTEVALTELTN 571


>gi|306785673|ref|ZP_07423995.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu003]
 gi|308329673|gb|EFP18524.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu003]
          Length = 582

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RL ++ + + A SG +GG  S EF+  + +GE
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGE 220



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  
Sbjct: 416 VMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASAGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LLG P  V+VG  + +D  VE++ R +G
Sbjct: 535 LLGMPWIVVVGRGW-ADGVVELRDRFSG 561


>gi|289178315|gb|ADC85561.1| Prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 615

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 137/218 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE
Sbjct: 15  LRMSTLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 75  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 134

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 135 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGA 194

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 195 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 232



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD KG+ 
Sbjct: 448 RGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPVWMGCYGIGVSRVLACIAETHHDDKGLA 507

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     D+   +A E++   LS  G +V +DD  +   G +F  A+L+
Sbjct: 508 WPMNIAPAQVHVM-ATGKDEAAFEAAERLVDELSANGIEVLYDDRRKVSPGVKFKDAELI 566

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+  + G   V++  +E++ R     E++S++ V
Sbjct: 567 GVPIIAVAGRDTVNNGTIEVRDRDGSNSENISVDSV 602


>gi|15609982|ref|NP_217361.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|148662686|ref|YP_001284209.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148824035|ref|YP_001288789.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|161350062|ref|NP_337423.2| prolyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|167967198|ref|ZP_02549475.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404817|ref|ZP_03416998.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215412677|ref|ZP_03421395.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428284|ref|ZP_03426203.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431786|ref|ZP_03429705.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|218754593|ref|ZP_03533389.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558862|ref|ZP_03537938.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|253798069|ref|YP_003031070.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 1435]
 gi|254232940|ref|ZP_04926267.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis C]
 gi|254365491|ref|ZP_04981536.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551909|ref|ZP_05142356.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260201976|ref|ZP_05769467.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|260206156|ref|ZP_05773647.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289444396|ref|ZP_06434140.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289553367|ref|ZP_06442577.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 605]
 gi|289571033|ref|ZP_06451260.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T17]
 gi|289575546|ref|ZP_06455773.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis K85]
 gi|289746643|ref|ZP_06506021.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289751506|ref|ZP_06510884.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T92]
 gi|289754953|ref|ZP_06514331.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289763021|ref|ZP_06522399.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis GM 1503]
 gi|297635458|ref|ZP_06953238.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732457|ref|ZP_06961575.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298526313|ref|ZP_07013722.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|306777129|ref|ZP_07415466.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu001]
 gi|306781035|ref|ZP_07419372.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu002]
 gi|306789713|ref|ZP_07428035.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu004]
 gi|306794347|ref|ZP_07432649.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu005]
 gi|306798770|ref|ZP_07437072.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu006]
 gi|306804616|ref|ZP_07441284.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu008]
 gi|306807350|ref|ZP_07444018.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu007]
 gi|306968909|ref|ZP_07481570.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu009]
 gi|306973245|ref|ZP_07485906.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu010]
 gi|307080954|ref|ZP_07490124.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu011]
 gi|307085549|ref|ZP_07494662.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu012]
 gi|313659789|ref|ZP_07816669.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|2501040|sp|O05814|SYP_MYCTU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2078014|emb|CAB08445.1| PROBABLE PROLYL-TRNA SYNTHETASE PROS (PROLINE--TRNA LIGASE) (PRORS)
           (GLOBAL RNA SYNTHESIS FACTOR) (PROLINE TRANSLASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|124601999|gb|EAY61009.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis C]
 gi|134151004|gb|EBA43049.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506838|gb|ABQ74647.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722562|gb|ABR07187.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis F11]
 gi|253319572|gb|ACT24175.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 1435]
 gi|289417315|gb|EFD14555.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289437999|gb|EFD20492.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 605]
 gi|289539977|gb|EFD44555.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis K85]
 gi|289544787|gb|EFD48435.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T17]
 gi|289687171|gb|EFD54659.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289692093|gb|EFD59522.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T92]
 gi|289695540|gb|EFD62969.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289710527|gb|EFD74543.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis GM 1503]
 gi|298496107|gb|EFI31401.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214498|gb|EFO73897.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu001]
 gi|308326143|gb|EFP14994.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu002]
 gi|308333812|gb|EFP22663.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu004]
 gi|308337323|gb|EFP26174.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu005]
 gi|308340981|gb|EFP29832.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu006]
 gi|308346273|gb|EFP35124.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu007]
 gi|308348796|gb|EFP37647.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu008]
 gi|308353522|gb|EFP42373.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu009]
 gi|308357363|gb|EFP46214.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu010]
 gi|308361316|gb|EFP50167.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu011]
 gi|308364916|gb|EFP53767.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu012]
 gi|323718544|gb|EGB27714.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CDC1551A]
 gi|326904458|gb|EGE51391.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis W-148]
 gi|328457842|gb|AEB03265.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 4207]
          Length = 582

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RL ++ + + A SG +GG  S EF+  + +GE
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGE 220



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  
Sbjct: 416 VMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LLG P  V+VG  + +D  VE++ R +G
Sbjct: 535 LLGMPWIVVVGRGW-ADGVVELRDRFSG 561


>gi|260187861|ref|ZP_05765335.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|289448507|ref|ZP_06438251.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CPHL_A]
 gi|289421465|gb|EFD18666.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CPHL_A]
          Length = 582

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RL ++ + + A SG +GG  S EF+  + +GE
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGE 220



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  
Sbjct: 416 VMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LLG P  V+VG  + +D  VE++ R +G
Sbjct: 535 LLGMPWIVVVGRGW-ADGVVELRDRFSG 561


>gi|197124440|ref|YP_002136391.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|226731425|sp|B4UGI0|SYP_ANASK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|196174289|gb|ACG75262.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 574

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 140/221 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  V AI+REE
Sbjct: 4   VRYSQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLAKVEAIVREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E  +P L  A++W ESGR+D  G  M RL DR       G THEE+ T + R 
Sbjct: 64  MDAIGGQEFYLPALHPAEIWKESGRWDVMGDNMFRLKDRKGGDYCLGMTHEEIFTAVARD 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +
Sbjct: 124 ELRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDRSYEDQRRA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y +IF R GL  + ++A SG +GG  S EF+V  + GE  V
Sbjct: 184 YEKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTEAGEDLV 224



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 98/161 (60%), Gaps = 1/161 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +E+GHIF  GTKYS  M AT   A+GK   + MGSYGIG  R++AA IE  HD  GI+
Sbjct: 409 KALEIGHIFKLGTKYSESMKATVLDAEGKQVPIVMGSYGIGVERILAAAIELHHDDNGIV 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P ++APF  +++ +    ++ R A E++ A L K G +V +DD  E+ G +F  ADLLG
Sbjct: 469 FPMAIAPFHATVLTLGPEPEL-RKAAEEVVAALGKEGVEVLFDDRDERAGVKFKDADLLG 527

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            P+++ VG K ++   VE K R  G  E + + EV   A+ 
Sbjct: 528 IPIRIAVGKKGLAAGNVEWKLRKGGAVELVPVGEVARKAAE 568


>gi|269956006|ref|YP_003325795.1| prolyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304687|gb|ACZ30237.1| prolyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 607

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 137/218 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V AI+REE
Sbjct: 11  LRLSSLFVRTLREDPADAEVASHRLLIRAGYIRRAAPGIYTWLPLGLRVLAKVEAIVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L   + +  +GR++ YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 71  MAAIGGQEVHFPALLPREPYEATGRWEEYGPNLFRLQDRKRADYLLAPTHEEMFTLLVKD 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T +QIQ K+RDE RPR G++R REF+MKD+YSFD T  G   +Y +   +
Sbjct: 131 LYSSYKDLPLTLFQIQTKYRDEARPRAGLIRGREFVMKDSYSFDHTDAGLDEAYQRHRDA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RLGL  + + A SG +GG  S EF+  +  GE
Sbjct: 191 YERIFTRLGLDYVIVSAMSGAMGGSRSEEFLSPSVIGE 228



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 3/144 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +       +GK   V MGSYGIG  R +AA+ E++HD +G+
Sbjct: 441 ARGIEMGHIFQLGRKYAEALGLKVLDENGKAVTVTMGSYGIGVTRALAALAEANHDERGL 500

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  VAP  + ++      +V  DA  ++   L   G +V +DD  +   G +FA A+L
Sbjct: 501 AWPAHVAPAHVHVVATGRGAEVF-DAAAELAEGLVANGVEVVYDDRPKVSPGVKFADAEL 559

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
           LG    ++V  + ++D  VE++ R
Sbjct: 560 LGV-PLLVVVGRGLADGVVEVRPR 582


>gi|195978861|ref|YP_002124105.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975566|gb|ACG63092.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 613

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/207 (43%), Positives = 134/207 (64%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E ++ GA
Sbjct: 2   LIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQEFDKIGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY+
Sbjct: 62  VEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRDAVKSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +Y  IF 
Sbjct: 122 QLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQAYEAIFT 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVL 213
           R GL    +  + G +GG  S EF+ +
Sbjct: 182 RAGLDFKGIIGDGGAMGGKDSQEFMAI 208



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 16/183 (8%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+   K  ++ P+   V   ARGIE+GHIF  GT+YS  M+A     +G+   + M
Sbjct: 411 AEYADIREVKEGETSPDGHGVLQFARGIEIGHIFKLGTRYSDSMAANILDENGRAVPIVM 470

Query: 315 GSYGIGAMRVVAAVIES------SHDGKG-------IIWPDSVAPFKISLINIKAHDQVC 361
           G YGIG  R+++AVIE       S   KG       I +P  +APF + LI +   DQ  
Sbjct: 471 GCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQEA 530

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D  EK+ A L   G DV  DD  E++GS+F+ +DL+G P++V +G K  ++  VEIK +
Sbjct: 531 QDLTEKVEASLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTIGKK-AAEGIVEIKIK 589

Query: 422 LTG 424
            TG
Sbjct: 590 ATG 592


>gi|315226277|ref|ZP_07868065.1| proline--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|315120409|gb|EFT83541.1| proline--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 590

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/268 (39%), Positives = 150/268 (55%), Gaps = 6/268 (2%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG K L+ + AIIREE N 
Sbjct: 2   STLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLKVLNKIEAIIREEINA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + +    
Sbjct: 62  LGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKDMYT 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K SY     +Y R
Sbjct: 122 SYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKSYLAERAAYER 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           IFHRL +  + + A SGP+GG  S EF+     GE     +     + + +  T   D +
Sbjct: 182 IFHRLAVDYVIVHAVSGPMGGSESEEFLAPLPIGEDTFALAPSGKAWNVEALTTPAMDPV 241

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             +        P A   D  +    DSL
Sbjct: 242 DYSQ------TPAATVVDTPDSPTIDSL 263



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  M       +GK   V MG YGIG  RV++ + E+ HD KG+I
Sbjct: 425 RGVEIGQVFQLGLKYSKAMGLNVLNQNGKAVPVWMGCYGIGVSRVMSCIAEAHHDDKGLI 484

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP SVAP ++ LI     DQ   D  E +   L K   +V +DD  +   G +F  ++LL
Sbjct: 485 WPLSVAPAQVHLIAT-GKDQKAYDLAESLLGDLEKADVEVLYDDRAKMSPGVKFKDSELL 543

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G P+ V+VG   +SD  VEI++R TG ++ + L++
Sbjct: 544 GLPMIVVVGRDTLSDGTVEIRNRATGEKDVVPLDQ 578


>gi|238061935|ref|ZP_04606644.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237883746|gb|EEP72574.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 582

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 133/219 (60%), Gaps = 1/219 (0%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            L  L+E+P DAE+ SH+L+LR G I + + G Y+WLPLG+  LD V  ++R E    G 
Sbjct: 2   LLRTLREDPADAEVPSHRLLLRAGYIRRAAPGGYTWLPLGKLVLDRVTDVVRGEMTAIGD 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + +    SYR
Sbjct: 62  QEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRRGAEHLLAPTHEELAALLVKDLFTSYR 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           + P T +Q+Q KFRDE RPR G++R REFLMKDAYSFDL   G   +Y +   +Y RIF 
Sbjct: 122 DFPVTLFQVQTKFRDEARPRAGLLRGREFLMKDAYSFDLDDAGLTAAYERHRAAYQRIFD 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           +LGL+   +RA SG +GG  S EF+     GE T V C+
Sbjct: 182 QLGLEYAVVRATSGAMGGSASEEFLAATQVGEDTFVGCT 220



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G +Y+   +    G  GK     MG YGIG  R VAA+ E  HD +G++
Sbjct: 414 RGIEVGHIFQLGRRYTDAFTVDVLGPAGKPVRPTMGCYGIGVSRAVAAIAEQHHDERGLV 473

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP +VAP  + L+      Q+  DA   +  RL+  G  V  DD      G +F  A+L+
Sbjct: 474 WPAAVAPCDVHLVAAGKGPQL--DAALDLGTRLAAAGLRVLVDDRTHVSAGVKFTDAELI 531

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  V+VG +  +D  VE++ R TG R ++ +  +++
Sbjct: 532 GLPRAVVVGRRL-ADGYVELRDRATGERTELPVAGLVD 568


>gi|31794022|ref|NP_856515.1| prolyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638725|ref|YP_978949.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224991217|ref|YP_002645906.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|81834897|sp|Q7TXQ5|SYP_MYCBO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112932|sp|A1KMI8|SYP_MYCBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|31619616|emb|CAD95055.1| PUTATIVE PROLYL-TRNA SYNTHETASE PROS (PROLINE--TRNA LIGASE) (PRORS)
           (GLOBAL RNA SYNTHESIS FACTOR) (PROLINE TRANSLASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494373|emb|CAL72854.1| Putative prolyl-tRNA synthetase proS [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774332|dbj|BAH27138.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 582

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 135/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y     +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYRAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RL ++ + + A SG +GG  S EF+  + +GE
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGE 220



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  
Sbjct: 416 VMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LLG P  V+VG  + +D  VE++ R +G
Sbjct: 535 LLGMPWIVVVGRGW-ADGVVELRDRFSG 561


>gi|306836356|ref|ZP_07469334.1| proline--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567716|gb|EFM43303.1| proline--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 594

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/217 (42%), Positives = 136/217 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + GIY+WLPLG + L  +  ++R+E 
Sbjct: 9   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGIYTWLPLGLRTLRKIEDVVRQEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  ++ GPTHEE+  +  +  
Sbjct: 69  DAIGGQEMLFPALLPREPYEKTNRWVEYGPNLFRLQDRKNADLLLGPTHEEMFANAVKDM 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD+  EG   SY +   +Y
Sbjct: 129 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMNDEGLDSSYARHRKAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             +F RL +     +A SG +GG  S EF+ L++ GE
Sbjct: 189 QNVFDRLEIDYAICKATSGAMGGSASEEFLALSEVGE 225



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+N+   A  RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A
Sbjct: 419 DPAPDNQGTLALQRGIELGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGISRMLA 478

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP +VAP+++  + +   D    +A +K+   LS+ G +V +DD  +
Sbjct: 479 VLAEQRHDDKGLNWPVAVAPYQVH-VAVANKDAAAMEAGDKLVEELSQAGLEVLFDDRPK 537

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  A+LLG P   IVG  F  D  +E++ R
Sbjct: 538 VSPGVKFKDAELLGMPFVAIVGRAF-KDGIIELRIR 572


>gi|184201256|ref|YP_001855463.1| prolyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|226701301|sp|B2GKS1|SYP_KOCRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183581486|dbj|BAG29957.1| prolyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 606

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 159/298 (53%), Gaps = 24/298 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ SHKL++R G I + + GIY+WLPLG   L  V  I+REE
Sbjct: 3   LRLSSLFLRTLREDPVDADVDSHKLLVRAGYIRRAAPGIYTWLPLGLAVLRRVEGIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  S R+  YG+ + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MDAIGAQEVHFPALLPREPYEASNRWTEYGENLFRLQDRKGADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y K   +
Sbjct: 123 MYSSYKDLPVMLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDDAYAKHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE------------------TQVF 222
           Y+RIF RLGL  + + A SG +GG  S EF+  +  GE                  T V 
Sbjct: 183 YVRIFERLGLPVVAVSATSGAMGGSRSEEFMHPSVVGEDTFVRSAGGYAANVEAVTTVVP 242

Query: 223 CSKDFMDFPIPS-----ENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              D  D P        ++   D ++S  N +  +   P+ A   + N  L  SLPE 
Sbjct: 243 EPVDCTDAPAAQVHRTPDSPTIDTLVSRSNELHPREGQPWTAADTLKNVLLSVSLPEG 300



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+E+GH+F  G KY+  +       +GK   V MGSYGIG  R +AAV E  HD  G+
Sbjct: 435 ARGMEMGHVFQLGRKYAEALGLKVLDNNGKLVTVTMGSYGIGVTRALAAVAEFYHDEHGL 494

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP +++P  + ++      +V  +A E+I A L   G  V +DD  +   G +F  A+L
Sbjct: 495 LWPRNLSPADVHVVATGKGPEVL-EAAEEIVAHLEAAGVSVLFDDRPKVSPGVKFRDAEL 553

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           LG P  ++VG + ++D  +E+K R +G   D++ + V+
Sbjct: 554 LGVPTVLVVG-RGLADGVLELKDRRSGTSRDIARDRVV 590


>gi|76563495|gb|ABA46079.1| prolyl-tRNA synthetase [Streptococcus agalactiae A909]
          Length = 612

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/208 (44%), Positives = 131/208 (62%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E  + GA
Sbjct: 2   LIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQEFEKIGA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY+
Sbjct: 62  VEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRDAVKSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +Y  IF 
Sbjct: 122 QLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKAYEAIFT 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           R GL    +  + G +GG  S EF+ + 
Sbjct: 182 RAGLDFKGIIGDGGAMGGKDSQEFMAVT 209



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           +RGIE+GHIF  GT+YS  M A     +G+ + + MG YGIG  R+++AVIE        
Sbjct: 435 SRGIEIGHIFKLGTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVN 494

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  
Sbjct: 495 KTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRN 554

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + +G
Sbjct: 555 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVKIKASG 592


>gi|86160363|ref|YP_467148.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|114152165|sp|Q2IGK6|SYP1_ANADE RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|85776874|gb|ABC83711.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 575

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 140/221 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R ++ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  + AI+REE
Sbjct: 4   VRYTQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLTKIEAIVREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E  +P L  A++W ESGR++  G  M RL DR       G THEE+ T I R 
Sbjct: 64  MNAIGGQEFFLPALHPAEIWKESGRWEVMGDNMFRLKDRKGGDYGLGMTHEEIFTAIARD 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +
Sbjct: 124 ELRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDKSYEDQRQA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y +IF R GL  + ++A SG +GG  S EF+V  D GE  V
Sbjct: 184 YEKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTDAGEDLV 224



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 97/161 (60%), Gaps = 1/161 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  GTKYS  M AT   A GK   + MGSYGIG  R++AA IE  HD  GI+
Sbjct: 409 KALEVGHIFKLGTKYSESMKATVLDAGGKQVPIVMGSYGIGVERILAAAIELHHDDNGIV 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P ++APF  +++ +    ++ R A E++ A L K G +V +DD  E+ G +F  ADLLG
Sbjct: 469 FPMAIAPFHATVLTLGPEPEL-RKAAEEVVAALGKEGVEVLFDDRDERAGVKFKDADLLG 527

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            P++V VG K ++   VE K R  G  E + L EV   A+ 
Sbjct: 528 IPIRVAVGKKGLAAGNVEWKLRRGGAVELVPLGEVARKAAE 568


>gi|229491433|ref|ZP_04385257.1| prolyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229321718|gb|EEN87515.1| prolyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 581

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 154/271 (56%), Gaps = 7/271 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   D +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRDPYEASNRWTEYGPNLFRLKDRKGNDYMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REFLMKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFLMKDSYSFDLTDEGLTESYQAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFD 240
            +IF RLG+K + + A SG +GG  S EF+  ++ GE T V C +      + +  T   
Sbjct: 184 EKIFTRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTVVP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           D I  + +      P A   D  N    D+L
Sbjct: 244 DSIPFDGL------PEAKVYDTANTPTIDTL 268



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 6/164 (3%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIE+GH+F  G KY+   +      +GK     MGSYG+G  R+VA + E  HD K
Sbjct: 416 VSARGIEIGHVFQLGRKYTDVFTVDVLAENGKPVRPTMGSYGVGVSRLVAVIAEQHHDEK 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  V+P  + L+ I   D+  R+  E + A+L + G +V  DD     G +F  ++
Sbjct: 476 GLRWPAEVSPADVYLV-IANKDETAREGAEGLAAQLDRAGLEVILDDRKASPGVKFKDSE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVIN 436
           L+G PL V+VG  + +D KVEI+ R TG    I  + ++EE+I+
Sbjct: 535 LIGVPLIVVVGRGW-ADGKVEIRDRFTGESREIDANSAIEEIIS 577


>gi|313898260|ref|ZP_07831797.1| proline--tRNA ligase [Clostridium sp. HGF2]
 gi|312956642|gb|EFR38273.1| proline--tRNA ligase [Clostridium sp. HGF2]
          Length = 564

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 10/250 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK +   L+EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSKSYFYTLRENVKDEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G + SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLQESYMKMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R  L    ++A++G +GG LS EF  + + GE          D  +  E  DF 
Sbjct: 181 YKNIMDRCNLNYKIVKADTGAMGGSLSEEFQAITEIGE----------DVVVTCEGCDFS 230

Query: 241 DIISLNSIVE 250
             + +  +++
Sbjct: 231 SNLEITEVID 240



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVG+ F  GTKY+  +   ++  + K H V+MG YG G  R +AA++E  +D  GI
Sbjct: 400 CKGIEVGNTFKLGTKYAKALGLEYQDVNNKLHPVEMGCYGFGLERCMAAIVEQHNDASGI 459

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAPF+++++ + + D        ++Y  L K G DV  DD  E+ G +F   +L+
Sbjct: 460 IWPTSVAPFEVAVVVVSSKDDEQMRIGNELYEALKKEGIDVLLDDRKERPGVKFKDMELI 519

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P ++ VG + + D  VE + R      D+SL E+++
Sbjct: 520 GIPYRITVG-RGIKDGNVEFRARTADESSDVSLHEIVD 556


>gi|183981901|ref|YP_001850192.1| prolyl-tRNA synthetase ProS [Mycobacterium marinum M]
 gi|183175227|gb|ACC40337.1| prolyl-tRNA synthetase ProS [Mycobacterium marinum M]
          Length = 582

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 137/223 (61%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I     G+YSWLPLG + L N+  +IREE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVGPGLYSWLPLGLRVLRNIERVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ+K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLTLYQIQIKYRDEARPRAGILRAREFVMKDSYSFDIDSGGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RL ++ + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFDRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G KY+   +A   G DGK   + MGSYGIG  R+VA + E  HD  
Sbjct: 416 VMARGIEIGHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVIAEQHHDNL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  +APF + L+ I   D   R     + + L  +G +V  DD     G +F  A+
Sbjct: 476 GLRWPAEIAPFGVHLV-IANKDAEARAGAIGLASELDGLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LLG P  V+VG  + +D  VE++ R  G   ++++
Sbjct: 535 LLGMPWVVVVGRGW-ADGVVELRDRFGGQTRELTV 568


>gi|13882685|gb|AAK47237.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
          Length = 578

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/215 (43%), Positives = 135/215 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E N 
Sbjct: 2   SELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEMNA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +    
Sbjct: 62  IGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGEYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y R
Sbjct: 122 SYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAYQR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RL ++ + + A SG +GG  S EF+  + +GE
Sbjct: 182 IFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGE 216



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  
Sbjct: 412 VMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDEL 471

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+
Sbjct: 472 GLRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAE 530

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LLG P  V+VG  + +D  VE++ R +G
Sbjct: 531 LLGMPWIVVVGRGW-ADGVVELRDRFSG 557


>gi|145224625|ref|YP_001135303.1| prolyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|145217111|gb|ABP46515.1| prolyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
          Length = 588

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/250 (40%), Positives = 147/250 (58%), Gaps = 1/250 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIEHIVRSEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +  
Sbjct: 64  DAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRDNDYLLGPTHEEMFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y+    +Y
Sbjct: 124 YSSYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVDDDGLKNAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  ++ GE T V C++      + +  T   
Sbjct: 184 QRIFDRLKVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRCAQSGYAANVEAVVTTAP 243

Query: 241 DIISLNSIVE 250
           D I L+ + E
Sbjct: 244 DPIPLDGLPE 253



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GH+F  G KY+   +A   G +GK   + MGSYGIG  R+VA + E  HD  
Sbjct: 420 VAARGIEIGHVFQLGRKYADAFNADVLGENGKPVRLTMGSYGIGVSRLVAVIAEQHHDEL 479

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP SVAPF + ++ I   D   R    ++   L + G DV  DD     G +F  A+
Sbjct: 480 GLRWPGSVAPFAVHVV-IANKDAEARAGATELATALDRAGADVLLDDRTASPGVKFKDAE 538

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LLG P  V+VG  + +D  VE++ R +G + ++ +
Sbjct: 539 LLGVPWIVVVGRGW-ADGVVELRDRFSGEKREIPV 572


>gi|118617676|ref|YP_906008.1| prolyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|152112934|sp|A0PQB8|SYP_MYCUA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118569786|gb|ABL04537.1| prolyl-tRNA synthetase ProS [Mycobacterium ulcerans Agy99]
          Length = 582

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 137/223 (61%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I     G+YSWLPLG + L N+  +IREE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVGPGLYSWLPLGLRVLRNIERVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLEDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ+K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLTLYQIQIKYRDEARPRAGILRAREFVMKDSYSFDIDSGGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RL ++ + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFDRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G KY+   +A   G DGK   + MGSYGIG  R+VA + E  HD  
Sbjct: 416 VMARGIEIGHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVIAEQHHDNL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  +APF + L+ I   D   R     +   L  +G +V  DD     G +F  A+
Sbjct: 476 GLRWPAEIAPFGVHLV-IANKDAEARAGAIGLAGELDGLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LLG P  V+VG  + +D  VE++ R  G   ++++
Sbjct: 535 LLGMPWVVVVGRGW-ADGVVELRDRFGGQTRELTV 568


>gi|300858703|ref|YP_003783686.1| prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686157|gb|ADK29079.1| Prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
          Length = 585

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 134/217 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R   I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSALFLRTLREDPADAEVPSHKLLVRARYIRRAAPGVYTWLPLGLRTLKKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DGIGAQELLFPALLPREPYQATNRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T +G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDDGLESSYQRHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RI  RLG++     A SG +GG  S EF+ +++ GE
Sbjct: 184 QRILDRLGVEYAICSATSGAMGGSASEEFLAISENGE 220



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 5/156 (3%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE +     ARGIEVGHIF  G KY+          +GK     MGSYGIG  R++A
Sbjct: 410 DPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGVSRLMA 469

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD KG+ WP  VAPF + ++ +   D    +A + + + L   G +V +DD  +
Sbjct: 470 VLAEQRHDEKGLNWPIEVAPFAVHVV-VANKDTAAIEAGDALVSELDAAGVEVLFDDRPK 528

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F  A+LLG P  V++G  F  + KVE++ R
Sbjct: 529 VSPGVKFKDAELLGMPYVVVLGRSF-KEGKVELRVR 563


>gi|123965807|ref|YP_001010888.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|152112942|sp|A2BVH0|SYP_PROM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123200173|gb|ABM71781.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 600

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 139/226 (61%), Gaps = 4/226 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  K ++ ++ II +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKGGYIRRVNSGIYAYMPIMLKVIEKISNIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  A+LW  S R++ Y      M  L DR  K     PTHEEV+T+
Sbjct: 61  ELNNNGCSKLLLPQLHPAELWKRSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITN 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + E     Y K
Sbjct: 121 IASEIINSYKQLPLCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSKEDLSSFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           M  SY  IF   GL ++ + A+SG IGG  S EF+V AD GE  + 
Sbjct: 181 MERSYENIFKNCGLDTVGVDADSGAIGGAASKEFMVTADAGEDYIL 226



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 82/151 (54%), Gaps = 3/151 (1%)

Query: 260 SDVHNEKLFD--SLPENKRV-SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           SD+ N K  D  SL  N+ +   RGIE+GHIF  G KYS  ++A F   DGK   + MG 
Sbjct: 408 SDIRNAKKGDRISLESNEELKEKRGIEIGHIFQLGQKYSEKLNAKFSDKDGKLKNLWMGC 467

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A IE +HD  GI WP  ++PF+I +I     D       E+IY       
Sbjct: 468 YGIGVTRIAQAAIEQNHDENGISWPIQISPFEILIIPTNLKDPYQTKLTEEIYKEFESKK 527

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            DV  DD   + G +F  ADL+G P Q+I+G
Sbjct: 528 IDVLLDDRDVRAGVKFKDADLIGIPFQIIIG 558


>gi|319759028|gb|ADV70970.1| prolyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 615

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 130/207 (62%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE ++  A
Sbjct: 2   IIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREEFDKIDA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           IE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R  ++SY+
Sbjct: 62  IEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARDAVQSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +Y  IF 
Sbjct: 122 QLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAAYEAIFT 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVL 213
           R GL+   +  + G +GG  S EF+ +
Sbjct: 182 RAGLEFKAIIGDGGAMGGKDSQEFMAI 208



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 436 ARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQHARLFVN 495

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+   +  + I A L   G +V  DD  
Sbjct: 496 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRN 555

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P++V VG K  +D  VE+K + TG
Sbjct: 556 ERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTG 593


>gi|123968100|ref|YP_001008958.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|152112943|sp|A2BPZ0|SYP_PROMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123198210|gb|ABM69851.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 600

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/229 (44%), Positives = 142/229 (62%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++PL  + ++ ++AII +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVNSGIYAYMPLMLRVIEKISAIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  +       Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSQNDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++
Sbjct: 181 VSNAYENIFKSCGLQTVGVEADSGAIGGASSKEFMVTADAGEDSILFTQ 229



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 98/178 (55%), Gaps = 4/178 (2%)

Query: 261 DVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +    + +    +GIE+GHIF  G KYS  ++A F   DG+   + MG Y
Sbjct: 409 DIRNAKKGDKISVYDDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGQLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  D  E+IY+       
Sbjct: 469 GIGVTRIAQAAIEQNHDQKGICWPIHISPFEVIIIPTNLKDPIQSDLTEQIYSNFLINKI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DV  DD  ++ G +F  A+L+G P Q+I+G   + + +VE+  R    +  +S ++++
Sbjct: 529 DVLLDDRNDRAGVKFKDAELIGIPFQIIIGRDSI-NKEVELLCRTNNTKLKISTDKLL 585


>gi|291059576|gb|ADD72311.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 619

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 143/252 (56%), Gaps = 11/252 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S +F P L+  P DA IASH+L++R G + + + G++++LPLG +    + AIIREE
Sbjct: 1   MKMSAFFAPTLRSAPADATIASHQLLMRAGYVRKIANGLFAYLPLGLRVRHKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +E + P +  A+LW ESGR+   G E+LR  +R D  +++ PT EE  T + R 
Sbjct: 61  LEAIGCLECTAPVVTPAELWKESGRWYRMGAELLRAKNRLDHELLFSPTAEESFTALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P + YQI  K+RDE+RPR+G+MR+REF M DAYSF         +Y K   +
Sbjct: 121 DCTSYKHFPLSLYQINAKYRDEIRPRYGLMRAREFTMADAYSFHTDCACLARTYEKFAHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF----------CSKDFMDF 230
           Y  IF R+GL  I + A  G +GG  S EF+V +  G+  +           C K     
Sbjct: 181 YRAIFRRIGLSVIAVHAHLGAMGGQESEEFMVESAVGDNTLLLCPHCTYAANCEKAVGQR 240

Query: 231 PIP-SENTDFDD 241
           P+P + +T   D
Sbjct: 241 PLPDTHDTHLKD 252



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 3/142 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +G E+GH+F  G KY+  M  TF    G   +  MG YGIG  R +A+V+E+ HD +GI 
Sbjct: 451 KGNELGHLFKLGDKYTRSMHLTFTDEQGVRQFPLMGCYGIGLDRTLASVVENHHDTRGIS 510

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +++P+ + LI I  H Q    A E +Y +L   G +V +DD  E+ G +FA ADL+G
Sbjct: 511 WPLAISPYAVVLIPIP-HTQAPYAAAEALYVQLRTRGVEVLFDDRAERPGVKFADADLIG 569

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
            PL+V++ +K +   +VE   R
Sbjct: 570 IPLRVVLSAKTL--PRVECTTR 589


>gi|330833575|ref|YP_004402400.1| prolyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329307798|gb|AEB82214.1| prolyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 615

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 130/207 (62%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE ++  A
Sbjct: 2   IIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREEFDKIDA 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           IE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R  ++SY+
Sbjct: 62  IEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARDAVQSYK 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +Y  IF 
Sbjct: 122 QLPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAAYEAIFT 181

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVL 213
           R GL+   +  + G +GG  S EF+ +
Sbjct: 182 RAGLEFKAIIGDGGAMGGKDSQEFMAI 208



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E        
Sbjct: 436 ARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQHARLFVN 495

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G+     GI +P  +APF + LI +   D+   +  + I A L   G +V  DD  
Sbjct: 496 KTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRN 555

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++G +F+ +DL+G P++V VG K  +D  VE+K + TG
Sbjct: 556 ERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTG 593


>gi|183602502|ref|ZP_02963867.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683545|ref|YP_002469928.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|254782886|sp|B8DTM3|SYP_BIFA0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183218143|gb|EDT88789.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621195|gb|ACL29352.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 599

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 135/215 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE N 
Sbjct: 2   STLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREEING 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +    
Sbjct: 62  IGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGAYER 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           IF RL LK +P+ A SGP+GG  S EF+     GE
Sbjct: 182 IFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGE 216



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD KG+ 
Sbjct: 432 RGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPVWMGCYGIGVSRVLACIAETHHDDKGLA 491

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     D+   +A E++   LS  G +V +DD  +   G +F  A+L+
Sbjct: 492 WPMNIAPAQVHVM-ATGKDEAAFEAAERLVDELSANGIEVLYDDRRKVSPGVKFKDAELI 550

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+  + G   V++  +E++ R     E++S++ V
Sbjct: 551 GVPIIAVAGRDTVNNGTIEVRDRDGSNSENISVDSV 586


>gi|126695873|ref|YP_001090759.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166980139|sp|A3PBN3|SYP_PROM0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126542916|gb|ABO17158.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 600

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/229 (44%), Positives = 142/229 (62%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++PL  + ++ ++AII +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVNSGIYAYMPLMLRVVEKISAIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  +       Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSENDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++
Sbjct: 181 VGNAYENIFESCGLQTVGVDADSGAIGGASSKEFMVTADAGEDSILFTQ 229



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 261 DVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +    + +    +GIE+GHIF  G KYS  ++A F   DG+   + MG Y
Sbjct: 409 DIRNAKKGDKISIDDDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGQLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  D  E+IY        
Sbjct: 469 GIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDPIQSDLTEQIYNNFLINKI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DV  DD  ++ G +F  A+L+G P QVI+G   + + +VE+  R    +  +S ++++
Sbjct: 529 DVLLDDRNDRAGVKFKDAELIGIPFQVIIGRDSI-NKEVELFCRTNNTKIKISTDKLL 585


>gi|157412925|ref|YP_001483791.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166980140|sp|A8G3M4|SYP_PROM2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157387500|gb|ABV50205.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 600

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/229 (44%), Positives = 142/229 (62%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++AII  
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLQAGYIRRVNSGIYAYMPIMLRVIEKISAIIER 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWRKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  +K
Sbjct: 181 VGNAYENIFKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTK 229



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 4/178 (2%)

Query: 261 DVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +    + +    +GIE+GHIF  G KYS  ++A F   DG    + MG Y
Sbjct: 409 DIRNAKKGDKISIANDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGTLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  +  E+IY        
Sbjct: 469 GIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDPIQSELTEQIYNNFLINKI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DV  DD  ++ G +F  A+L+G P Q+I+G   V + +VE+  R    +  +S ++++
Sbjct: 529 DVLLDDRNDRAGVKFKDAELIGIPFQIIIGRDSV-NKEVELLSRTNNTKFKISTDKLL 585


>gi|88855365|ref|ZP_01130029.1| prolyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88815272|gb|EAR25130.1| prolyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 593

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 137/217 (63%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ASH+L++R G I + + G+++WLPLG K    + AIIREE 
Sbjct: 4   RLSQLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGVFAWLPLGLKVRRKIEAIIREEL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR+  YG  + RL DR D   +  PTHEEV T + +  
Sbjct: 64  ESFGAQEVLFPALLPREPYELTGRWTEYGDGIFRLKDRKDADYLLAPTHEEVFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKD+YSFD T  G   SY +   +Y
Sbjct: 124 YSSYKDLPLSLYQIQDKYRDEARPRAGLLRGREFSMKDSYSFDYTDAGLDLSYQQHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL+ + + A++G +GG  S EF+     GE
Sbjct: 184 ERIFTRLGLEYVVVSADAGAMGGSKSEEFLHPTPIGE 220



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 5/180 (2%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +V + +  D  P+      +ARG+E+GH+F  G KY+  +       +GK   V MG
Sbjct: 410 GTVEVSDVRAGDPAPDGSGPIETARGMEIGHVFQLGRKYAEVLGLKVLDENGKLVTVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++AA+ E+++DGKG++WP +++PF + ++     D V  +  E +   L   
Sbjct: 470 SYGIGVTRLMAAIAETTNDGKGLLWPKNISPFDVHIVA-AGKDAVVFETAESLVTTLESA 528

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD +    G +F  A+LLG P  VIVG +  ++  VE+  R+T  R   ++ +V
Sbjct: 529 GLDVLFDDRVKVSPGVKFGDAELLGVPKIVIVG-RDAANGMVEVWDRVTNERTSTAIADV 587


>gi|312139298|ref|YP_004006634.1| prolyl-tRNA ligase pros [Rhodococcus equi 103S]
 gi|311888637|emb|CBH47949.1| prolyl-tRNA ligase ProS [Rhodococcus equi 103S]
          Length = 581

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 111/267 (41%), Positives = 155/267 (58%), Gaps = 18/267 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RMSHLFLRTLRDDPADAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   D +  S R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAMGAQEILLPALLPRDPYETSNRWTEYGAGLFRLKDRKGNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC-----------SKDFMD 229
            RI  RLG+K + + A SG +GG  S EF+  ++ GE T V C            K    
Sbjct: 184 ERILARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTLAP 243

Query: 230 FPI------PSENTDFDDIISLNSIVE 250
            P+      P+E  D  D  +++++VE
Sbjct: 244 APVPFDGLPPAEVRDTPDTETIDTLVE 270



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 93/164 (56%), Gaps = 6/164 (3%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIEVGH+F  G KY+        G +GK     MGSYGIG  R+VA + E  HD K
Sbjct: 416 VAARGIEVGHVFQLGRKYTDVFGVDVLGENGKPVRPTMGSYGIGVSRLVAVIAEQHHDDK 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  V+PF + L+ I   D   R+  E + A L K   DV +DD     G +F  ++
Sbjct: 476 GLRWPSEVSPFDVHLV-IANKDDAAREGAEALAAELDKARVDVLFDDRKASPGVKFKDSE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVIN 436
           L+G PL V+VG  F ++  VE++ R TG    +  D +L+E++ 
Sbjct: 535 LIGVPLVVVVGRGF-AEGNVELRDRFTGESREVPVDAALDEILT 577


>gi|325673396|ref|ZP_08153087.1| proline--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325555417|gb|EGD25088.1| proline--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 581

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 111/267 (41%), Positives = 155/267 (58%), Gaps = 18/267 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RMSHLFLRTLRDDPADAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   D +  S R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAMGAQEILLPALLPRDPYETSNRWTEYGAGLFRLKDRKGNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC-----------SKDFMD 229
            RI  RLG+K + + A SG +GG  S EF+  ++ GE T V C            K    
Sbjct: 184 ERILARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTLAP 243

Query: 230 FPI------PSENTDFDDIISLNSIVE 250
            P+      P+E  D  D  +++++VE
Sbjct: 244 APVPFDGLPPAEVRDTPDTETIDTLVE 270



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 93/164 (56%), Gaps = 6/164 (3%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIEVGH+F  G KY+        G +GK     MGSYGIG  R+VA + E  HD K
Sbjct: 416 VAARGIEVGHVFQLGRKYTDVFGVDVLGENGKPVRPTMGSYGIGVSRLVAVIAEQHHDDK 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  V+PF + L+ I   D   R+  E + A L K   DV +DD     G +F  ++
Sbjct: 476 GLRWPSEVSPFDVHLV-IANKDDAAREGAEALAAELDKARVDVLFDDRKASPGVKFKDSE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVIN 436
           L+G PL V+VG  F ++  VE++ R TG    +  D +L+E++ 
Sbjct: 535 LIGVPLVVVVGRGF-AEGNVELRDRFTGESREVPVDAALDEILT 577


>gi|152965404|ref|YP_001361188.1| prolyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|189083501|sp|A6W7Y5|SYP_KINRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151359921|gb|ABS02924.1| prolyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 586

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 135/218 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P +AE+ASHKL++R G + + + GIY+WLPLG K L  V  ++REE
Sbjct: 3   MRMSTLFLRTLREDPVEAEVASHKLLVRAGYVRRAAPGIYTWLPLGLKVLRKVEQVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+  YG  + +L DR     +  PTHEE+ T + + 
Sbjct: 63  MDAAGAQEVHFPALLPREPYEATNRWSDYGDGIFKLKDRKGADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF MKD+YSFD+   G + SY     +
Sbjct: 123 LYSSYKDLPLSIYQIQTKYRDEARPRAGIIRGREFTMKDSYSFDVDDAGLERSYELHRQA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+RIF RLGL  + + A SG +GG  S EF+     GE
Sbjct: 183 YVRIFERLGLDFVIVSAVSGAMGGSRSEEFLHPTAIGE 220



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+ HIF  G +++  +       +GK   V MGSYG+G  R +A V E +HD KG+
Sbjct: 422 ARGIEIAHIFALGRRFAQALDLKVLDENGKQVVVTMGSYGVGVTRALACVAEGNHDEKGL 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP ++AP  + ++      ++   A E++   L   G +V +DD  +   G +F  A+L
Sbjct: 482 VWPRALAPADVHVVATGKDPEIFATA-ERLAGELVAQGLEVLYDDRPKVSPGVKFKDAEL 540

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G P  ++VG K +++  VE+K R +G  E ++L++ ++
Sbjct: 541 IGVPTILVVG-KGLAEGLVELKDRRSGDSEQVALDDAVS 578


>gi|226306102|ref|YP_002766062.1| prolyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|259511615|sp|C0ZY88|SYP_RHOE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226185219|dbj|BAH33323.1| prolyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 581

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 154/271 (56%), Gaps = 7/271 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   D +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRDPYEASNRWTEYGPNLFRLKDRKGNDYMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLTESYQAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFD 240
            +IF RLG+K + + A SG +GG  S EF+  ++ GE T V C +      + +  T   
Sbjct: 184 EKIFTRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTVVP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           D I  + +      P A   D  N    D+L
Sbjct: 244 DSIPFDGL------PEAKVYDTANTPTIDTL 268



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 6/164 (3%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIE+GH+F  G KY+   +      +GK     MGSYG+G  R+VA + E  HD K
Sbjct: 416 VSARGIEIGHVFQLGRKYTDVFTVDVLAENGKPVRPTMGSYGVGVSRLVAVIAEQHHDEK 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  V+P  + L+ I   D+  R+  E + A+L + G +V  DD     G +F  ++
Sbjct: 476 GLRWPAEVSPADVYLV-IANKDETAREGAEGLAAQLDRAGLEVILDDRKASPGVKFKDSE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVIN 436
           L+G PL V+VG  + +D KVEI+ R TG    I  D ++E +I+
Sbjct: 535 LIGVPLIVVVGRGW-ADGKVEIRDRFTGESREIDADSAIEAIIS 577


>gi|315444957|ref|YP_004077836.1| prolyl-tRNA synthetase, family II [Mycobacterium sp. Spyr1]
 gi|315263260|gb|ADU00002.1| prolyl-tRNA synthetase, family II [Mycobacterium sp. Spyr1]
          Length = 584

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 146/248 (58%), Gaps = 1/248 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E + 
Sbjct: 2   SELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIEHIVRSEMDA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +    
Sbjct: 62  IGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRDNDYLLGPTHEEMFTLTVKGEYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y+    +Y R
Sbjct: 122 SYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVDDDGLKNAYHAHREAYQR 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFDDI 242
           IF RL ++ + + A SG +GG  S EF+  ++ GE T V C++      + +  T   D 
Sbjct: 182 IFDRLKVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRCAQSGYAANVEAVVTTAPDP 241

Query: 243 ISLNSIVE 250
           I L+ + E
Sbjct: 242 IPLDGLPE 249



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GH+F  G KY+   +A   G +GK   + MGSYGIG  R+VA + E  HD  
Sbjct: 416 VAARGIEIGHVFQLGRKYADAFNADVLGENGKPVRLTMGSYGIGVSRLVAVIAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP SVAPF + ++ I   D   R    ++   L + G DV  DD     G +F  A+
Sbjct: 476 GLRWPGSVAPFAVHVV-IANKDAEARAGATELATALDRAGADVLLDDRTASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LLG P  V+VG  + +D  VE++ R +G + ++ +
Sbjct: 535 LLGVPWIVVVGRGW-ADGVVELRDRFSGEKREIPV 568


>gi|309775936|ref|ZP_07670928.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916218|gb|EFP61966.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 564

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 10/263 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKDEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYKKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R  L    ++A++G +GG LS EF  + + GE          D  +  +  DF 
Sbjct: 181 YENIMERCDLTYKIVKADTGAMGGSLSEEFQAITEIGE----------DVVVTCDGCDFS 230

Query: 241 DIISLNSIVEQWTAPYAATSDVH 263
             + +  +++  T   A   D+ 
Sbjct: 231 SNLEITEVIDTSTPSDAPMQDME 253



 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVG+ F  GTKY+  +   ++  + K H V+MG YG G  R +AA++E  +D  GI
Sbjct: 400 CKGIEVGNTFKLGTKYAKALGLEYQDVNNKLHPVEMGCYGFGLERCMAAIVEQHNDASGI 459

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAPF+++++ + + D+       ++Y  L K G DV  DD  E+ G +F   +L+
Sbjct: 460 IWPASVAPFEVAVVVVSSKDEEQMRIGNELYEALKKEGVDVLLDDRKERPGVKFKDMELI 519

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P ++ VG + + D  VE + R      D++L EV+
Sbjct: 520 GIPYRITVG-RGIKDGNVEFRARTASESSDIALSEVV 555


>gi|33861065|ref|NP_892626.1| prolyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|81835597|sp|Q7V2H0|SYP_PROMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33639797|emb|CAE18967.1| Prolyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 600

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 169/310 (54%), Gaps = 12/310 (3%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++ II +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKGGYIRRVNSGIYAYMPIMLRVIEKISTIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N     ++ +P L  A+LW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNNIYCSKLLLPQLHPAELWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E     Y K
Sbjct: 121 IASEMINSYKQLPLCFYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHSSKEDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           M  +Y  IF   GL ++ + A+SG IGG  S EF+V AD GE  +  ++        S  
Sbjct: 181 MEKAYENIFKNCGLDTVGVDADSGAIGGAASKEFMVTADAGEDSILFTES------GSYA 234

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY--FGTKY 294
            + +  +SL S        +    +  N+K    + +N  + A  I    IF   F  K 
Sbjct: 235 ANIEKAVSLPSKEIPLIRSHEEWIETPNQKSIVDICQNNNLDASQIIKVVIFLAKFEDKS 294

Query: 295 SLPMSATFKG 304
            +P+ A  +G
Sbjct: 295 EVPILACIRG 304



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 3/151 (1%)

Query: 260 SDVHNEKLFDSLPE--NKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           SD+ N K  D + +  N+ +   RGIE+GHIF  G KYS  ++A F   +G+   + MG 
Sbjct: 408 SDIRNAKKGDCISQESNEELKEKRGIEIGHIFQLGQKYSEKLNAKFSDKNGQLKNLWMGC 467

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A IE +HD  GI WP  ++PF+I +I     D + ++  ++IY       
Sbjct: 468 YGIGVTRIAQAAIEQNHDENGISWPIQISPFEILIIPTNLKDPIQKELTQEIYEEFISNQ 527

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            DV  DD  ++ G +F  ADL+G P Q+I+G
Sbjct: 528 IDVLLDDRDDRAGVKFKDADLIGIPFQIIIG 558


>gi|317508518|ref|ZP_07966185.1| prolyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316253209|gb|EFV12612.1| prolyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 606

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 137/223 (61%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ +HKL++R G   + S G+++WLPLG KAL  +  ++REE 
Sbjct: 4   RLSELFLRTLREDPADAEVPNHKLLVRGGYFRRVSPGVFAWLPLGLKALRQIENVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L     +  S R+  YG  + RL DR     +  PTHEE+   + +  
Sbjct: 64  DGIGGQEILLPALAPRQPYETSNRWTEYGDNLFRLKDRKGGDYLLAPTHEELFALLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G+K +Y+    +Y
Sbjct: 124 YTSYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDVDEAGNKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RLG+  + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFDRLGISYVIVAATSGAMGGSASEEFLAESAIGEDTYVRC 226



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            K V+ARGIE+GH+F  GTKY+   S    G +GK   + MGSYGIG  R+V  + E  H
Sbjct: 417 GKLVAARGIEIGHVFALGTKYTDAFSVDVLGENGKPARLIMGSYGIGVSRLVGVIAEQWH 476

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KG+ WP  VAPF++ +++         +A E+  A L   G  V  DD     G +FA
Sbjct: 477 DEKGLRWPPQVAPFQVHVLST-GKGSAEAEAAEQYAAELEAHGLRVLLDDRKASPGVKFA 535

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            A+LLG P+ V+VG  + S+ KVE+K R  G
Sbjct: 536 DAELLGAPVIVVVGRDWASEGKVELKERFAG 566


>gi|254525440|ref|ZP_05137492.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221536864|gb|EEE39317.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 598

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/225 (43%), Positives = 140/225 (62%), Gaps = 3/225 (1%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + + L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++AII  E N 
Sbjct: 3   TSFPLGTLRDTPSEAEIISHQLLLQAGYIRRVNSGIYAYMPIMLRVIEKISAIIERELNS 62

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T I   
Sbjct: 63  IGCTKLLLPQLHPADLWRKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITSIASE 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K+  +
Sbjct: 123 TINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEKVGNA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  +K
Sbjct: 183 YENIFKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTK 227



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 261 DVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +    + +    +GIE+GHIF  G KYS  ++A F   DGK   + MG Y
Sbjct: 407 DIRNAKKGDKISIANDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGKLKNLWMGCY 466

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  +  E+IY        
Sbjct: 467 GIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDPIQSELTEQIYNNFLINKI 526

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DV  DD  ++ G +F  A+L+G P Q+I+G   V + +VE+  R    +  +S ++++
Sbjct: 527 DVLLDDRNDRAGVKFKDAELIGIPFQIIIGRDSV-NKEVELLSRTNNTKFKISTDKLL 583


>gi|160915433|ref|ZP_02077644.1| hypothetical protein EUBDOL_01441 [Eubacterium dolichum DSM 3991]
 gi|158432553|gb|EDP10842.1| hypothetical protein EUBDOL_01441 [Eubacterium dolichum DSM 3991]
          Length = 553

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/241 (39%), Positives = 144/241 (59%), Gaps = 10/241 (4%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE +  GA E+ 
Sbjct: 1   MRENAKDEDSVSGNLLVRAGMIKKSSAGIYMIMPMGKRVLKKIEDIVREEMDAAGAQELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P L   +++  SGR D++G  M  L DR  K  + GPTHEE+ T       +SY++ P+
Sbjct: 61  MPALIPEEVYEISGRRDAFGSNMFALKDRYQKNYVLGPTHEELFTLAAMMKGRSYKDFPY 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQIQ KFRDE RPR+G++R+REF+MKDAYSFD+  E    SY KMF +Y +IF R  L
Sbjct: 121 NLYQIQTKFRDETRPRYGLIRTREFIMKDAYSFDIDNEHLHESYMKMFDAYKKIFDRCDL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++A++G +GG LS EF  + D GE          D  +  E+  F   + +  +V+
Sbjct: 181 NYKIVKADTGAMGGSLSEEFQAICDVGE----------DVVVTCEHCGFSSNLEITEVVD 230

Query: 251 Q 251
           +
Sbjct: 231 R 231



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVG+ F  G KY+  +   +  A+   H V+MG YG+G  R +A+++E  HD  GI
Sbjct: 390 CKGIEVGNTFKLGNKYAKALGLEYLDANNTLHPVEMGCYGLGLERTLASIVEQHHDDDGI 449

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP++++++ +   D+       ++Y  L   G DV  DD  E+ G +F   +L+
Sbjct: 450 IWPLSVAPYQVAIVIVSMKDEEQVRIANELYETLKAEGYDVLLDDRKERPGVKFKDMELI 509

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P ++ VG + ++   VE++ R     E++++E V+ Y  ++  
Sbjct: 510 GIPYRITVG-RGIAQGNVELRARGAHENEEVAIENVVTYLQNKLQ 553


>gi|331087039|ref|ZP_08336114.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409489|gb|EGG88932.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 564

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 147/251 (58%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN ++ +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKEEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R  L    ++A++G +GG LS EF  + D GE  V  + D  DF    E T+  
Sbjct: 181 YQNIMERCKLNYKIVKADTGAMGGSLSEEFQAITDIGE-DVIVTCDGCDFSSNLEITEVI 239

Query: 241 DIISLNSIVEQ 251
           D+   +   EQ
Sbjct: 240 DVSEPSDAEEQ 250



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVG+ F  GTKY+  +   ++  D K H V+MG YG G  R +AA++E  +D  GI
Sbjct: 400 CKGIEVGNTFKLGTKYAKTLGLEYQDVDNKLHPVEMGCYGFGLERCMAAIVEQHNDEAGI 459

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAPF+++++ + + D+       ++Y  L K G DV  DD  E+ G +F   +L+
Sbjct: 460 IWPASVAPFEVAVVVVSSKDEEQMRIGSELYEALKKEGIDVLLDDRKERPGVKFKDMELI 519

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P ++ VG + + + KVE + R      +++L EVI        
Sbjct: 520 GIPYRITVG-RGIQEGKVEFRARTAAENREIALGEVIKLVKEELQ 563


>gi|330791908|ref|XP_003284033.1| hypothetical protein DICPUDRAFT_74994 [Dictyostelium purpureum]
 gi|325086079|gb|EGC39475.1| hypothetical protein DICPUDRAFT_74994 [Dictyostelium purpureum]
          Length = 606

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 141/223 (63%), Gaps = 1/223 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RSK F+P   +      I S  LM + G+I + + G YS LP  QKAL+N+  +I EE  
Sbjct: 45  RSKMFIPFQDQKMETDLIESQLLMQKGGLIRKLAVGSYSTLPFAQKALENLIKVIDEEME 104

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  +M++P +   +LW ++GR+D++GK++++L DR +     GPTHEEV+T I  +  
Sbjct: 105 QVGGQKMTMPKMIPKELWDKTGRWDAFGKDLIKLKDRRENEYCMGPTHEEVVTSIVGNEK 164

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
             + N P   YQI  KFRDE+RPRFG++R +EFLMKD YSFD+T E ++ +Y ++  +Y 
Sbjct: 165 LPFNNFPIKLYQIGEKFRDEIRPRFGLLRGKEFLMKDMYSFDVTKEDAEKTYYQVKQAYH 224

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCS 224
            I  RL L    + A+SG IGG++SHEF V+   GE + + CS
Sbjct: 225 NILDRLELPYACVEADSGNIGGNMSHEFQVVTKAGEDKLIHCS 267



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 22/181 (12%)

Query: 280 RGIEVGHIFYFGTKYSLPMSAT-FKGADGKDHYVQMGSYGIGAMRVVAAVIES-SHDGK- 336
           +GIEVGHIFY G KYS   +AT  K    KD  ++MG +GIG  R++AA +E+ S  GK 
Sbjct: 429 KGIEVGHIFYLGNKYSSSFNATSCKNNIVKD--LEMGCFGIGVSRLLAASVEALSKSGKE 486

Query: 337 --------GIIWPDSVAPFKISLINIKAHDQVCRDACE---KIYARLSKVGCDVFWDDMG 385
                    I +P  + P+ I ++  K   Q  +DA E   ++  ++ ++   +  DD  
Sbjct: 487 IDGTVTKDKITFPKEITPYHIIIVPKKESLQ--KDAEEISQQLQQQIPELKGRIIIDDRH 544

Query: 386 E-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED---MSLEEVINYASHR 441
           +  +G +   +  LG P  +++       +  ++++    I+E+   ++  + ++Y  ++
Sbjct: 545 DANVGHKIFESKFLGIPYLLVLNIDKSKQTNYKVEYDYGQIKEENNYLNQPDTLDYFKNK 604

Query: 442 F 442
           F
Sbjct: 605 F 605


>gi|170055177|ref|XP_001863466.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167875210|gb|EDS38593.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 315

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 169/321 (52%), Gaps = 37/321 (11%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDN-VNAIIREEQNRTGAIEMSVPTLQSADLW 80
           S +LML  G+I Q   G +  +PL Q++L   V+ +    Q    A ++++P L +A LW
Sbjct: 13  SQRLMLEQGLIRQAGNGTFYLMPLLQRSLQKAVDLVDHFMQRHASAQKLTLPILTAASLW 72

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKF 139
            +SGR +S G E++R  DR+ K  I GPTHEE +T +  S    SYR  P   YQI  KF
Sbjct: 73  RQSGRLESAGPELMRTTDRHGKQQILGPTHEESITALVASISPVSYRAFPLRLYQISTKF 132

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE++PRFG+MR++EFLMKD Y+FD+    ++ +Y ++  +Y ++F  +G+  + +R ++
Sbjct: 133 RDEMKPRFGLMRAKEFLMKDLYTFDVGRGEARETYEEVNEAYRKLFDAVGVGYVKVRGDT 192

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG  SHE+   ++ GE Q+ C  +                         W       
Sbjct: 193 GTIGGSESHEYHFPSEVGEDQLVCCGE---------------------CGMGW------- 224

Query: 260 SDVHNEKLFDSLPE--NKRVSAR-GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               N+++F          VS + GIEV H F    KYS  M A F   +GK   +QMG 
Sbjct: 225 ----NQEMFGGCERCGGANVSRQAGIEVAHAFILDDKYSKTMGAKFLAQNGKPETLQMGC 280

Query: 317 YGIGAMRVVAAVIESSHDGKG 337
           YGIG  R++AA +E     KG
Sbjct: 281 YGIGVTRLLAAGVEVLSGEKG 301


>gi|15639153|ref|NP_218599.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025393|ref|YP_001933165.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094411|sp|O83195|SYP_TREPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701353|sp|B2S2A7|SYP_TREPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3322426|gb|AAC65149.1| prolyl-tRNA synthetase (proS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017968|gb|ACD70586.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 617

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 141/249 (56%), Gaps = 11/249 (4%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S +F P L+  P DA IASH+L++R G + + + G++++LPLG +    + AIIREE   
Sbjct: 2   SAFFAPTLRSAPADATIASHQLLMRAGYVRKIANGLFAYLPLGLRVRHKIEAIIREELEA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E + P +  A+LW ESGR+   G E+LR  +R D  +++ PT EE  T + R    
Sbjct: 62  IGCLECTAPVVTPAELWKESGRWYRMGAELLRAKNRLDHELLFSPTAEESFTALVRGDCT 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++ P + YQI  K+RDE+RPR+G+MR+REF M DAYSF         +Y K   +Y  
Sbjct: 122 SYKHFPLSLYQINAKYRDEIRPRYGLMRAREFTMADAYSFHTDCACLARTYEKFAHAYRA 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF----------CSKDFMDFPIP 233
           IF R+GL  I + A  G +GG  S EF+V +  G+  +           C K     P+P
Sbjct: 182 IFRRIGLSVIAVHAHLGAMGGQESEEFMVESAVGDNTLLLCPHCTYAANCEKAVGQRPLP 241

Query: 234 -SENTDFDD 241
            + +T   D
Sbjct: 242 DTHDTHLKD 250



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 3/142 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +G E+GH+F  G KY+  M  TF    G   +  MG YGIG  R +A+V+E+ HD +GI 
Sbjct: 449 KGNELGHLFKLGDKYTRSMHLTFTDEQGVRQFPLMGCYGIGLDRTLASVVENHHDTRGIS 508

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +++P+ + LI I  H Q    A E +Y +L   G +V +DD  E+ G +FA ADL+G
Sbjct: 509 WPLAISPYAVVLIPIP-HTQAPYAAAEALYVQLRTRGVEVLFDDRAERPGVKFADADLIG 567

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
            PL+V++ +K +   +VE   R
Sbjct: 568 IPLRVVLSAKTL--PRVECTTR 587


>gi|325663512|ref|ZP_08151922.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470411|gb|EGC73642.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 564

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 145/243 (59%), Gaps = 4/243 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN ++ +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKEEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R  L    ++A++G +GG LS EF  + D GE  V  + D  DF   S N +  
Sbjct: 181 YQNIMERCKLNYKIVKADTGAMGGSLSEEFQAITDIGE-DVIVTCDGCDF---SSNLEIT 236

Query: 241 DII 243
           ++I
Sbjct: 237 EVI 239



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVG+ F  GTKY+  +   ++  D K H V+MG YG G  R +AA++E  +D  GI
Sbjct: 400 CKGIEVGNTFKLGTKYAKTLGLEYQDVDNKLHPVEMGCYGFGLERCMAAIVEQHNDEAGI 459

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAPF+++++ + + D+       ++Y  L K G DV  DD  E+ G +F   +L+
Sbjct: 460 IWPASVAPFEVAVVVVSSKDEEQMRIGNELYEALKKEGIDVLLDDRKERPGVKFKDMELI 519

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P ++ VG + + + KVE + R      +++L+EVI        
Sbjct: 520 GIPYRITVG-RGIQEGKVEFRARTAAENREIALDEVIKLVKEELQ 563


>gi|254819680|ref|ZP_05224681.1| prolyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 583

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 135/223 (60%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEGIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLKDRRGSDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFLMKDSYSFDVDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RL ++ + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  
Sbjct: 416 VSARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP SVAPF + L+ I   D   R    ++   L ++G DV  DD     G +F  A+
Sbjct: 476 GLRWPSSVAPFDVHLV-IANKDDRARTGATELAGELDRLGVDVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LLG P  V+VG  + +D  VE++ R  G   +++
Sbjct: 535 LLGVPWIVVVGRGW-ADGVVELRDRFGGQTRELA 567


>gi|226366073|ref|YP_002783856.1| prolyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|254782912|sp|C1B2Z4|SYP_RHOOB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226244563|dbj|BAH54911.1| prolyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 581

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 141/223 (63%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S+P L   + +  S R+  YG+ + RL DR     + GPTHEE+     +  
Sbjct: 64  NGIGAQEISLPALLPREPYEASNRWTEYGEGLFRLKDRKGGDYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTESYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RLG+K + + A SG +GG  S EF+  ++ GE T V C
Sbjct: 184 ERIFARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRC 226



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 2/160 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GH+F  G KY+   S    G +GK     MGSYG+G  R+VA + E  HD K
Sbjct: 416 VAARGIEIGHVFQLGRKYTDVFSVDVLGENGKPVRPTMGSYGVGVSRLVAVIAEQHHDDK 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  V+P  + ++ I   D   R+  E + A L K G +V  DD     G +F  ++
Sbjct: 476 GLRWPAEVSPADVHVV-IANKDDTAREGAEGLAADLDKAGLEVILDDRKASPGVKFKDSE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           LLG PL V+VG  +  + KVE++ R TG   +++ E  ++
Sbjct: 535 LLGVPLVVVVGRGW-GEGKVEVRDRFTGESREVAAESALS 573


>gi|240172755|ref|ZP_04751414.1| prolyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 582

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 1/225 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +   + G+YSWLPLG + L N+  ++REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYVRPIAPGLYSWLPLGLRVLRNIERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLVLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDSAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
            RIF RL ++ + + A SG +GG  S EF+  +  GE T V C +
Sbjct: 184 QRIFERLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCPE 228



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G KY+   SA   G DGK   + MGSYGIG  R+VA V E  HD  
Sbjct: 416 VMARGIEIGHIFQLGQKYTDAFSADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP ++APF + L+ I   D   R     +   L++ G +V  DD     G +F  A+
Sbjct: 476 GLRWPPAIAPFDVHLV-IANKDAEARTGAVALATELNQQGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LLG P  V+VG  + +D  VE++ R +G   +++
Sbjct: 535 LLGMPWIVVVGRGW-ADGVVELRDRFSGQTRELA 567


>gi|311897171|dbj|BAJ29579.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 586

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 140/221 (63%), Gaps = 1/221 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E+P DA+ ASH+L++R G + Q + G YS LPL  +    + A++REE
Sbjct: 1   MRWSQLYVPTLREDPADADAASHRLLVRAGYVRQLAAGHYSLLPLAARVRARIVAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E  +P L  A+LW  +GR++S G+EM RL DR       G THEEV   +   
Sbjct: 61  MERIGAQEFLLPALHPAELWRRTGRWESMGEEMFRLTDRKGAEQALGMTHEEVFAHLA-E 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T+YQ Q KFRDE RPR G++R REF MKD+YSFDL   G   S+    ++
Sbjct: 120 ELRSYRQLPQTWYQFQTKFRDEARPRSGLLRVREFTMKDSYSFDLDEAGMARSFEAHRLA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           YLRIF RLGL +  +RA SG +GG  S EF+  +  GE  V
Sbjct: 180 YLRIFERLGLPAFGVRASSGAMGGSGSVEFMSPSAAGEDLV 220



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 19/240 (7%)

Query: 200 GPIGGDLSHEFIVLADT---GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           GP+GG   H   VLAD    G T + C  +   F +   +   D  ++  + + + TA  
Sbjct: 354 GPLGG---HGLPVLADEALRGRTGLTCGANRDGFHLRGVSIGRDVRVTRWADLREVTAGE 410

Query: 257 -AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             A      E L            R IEVGHIF  G +Y+  +     G  G+     MG
Sbjct: 411 PCAECGAALEVL------------RTIEVGHIFQLGRRYTEALGVAVAGPAGERVVPLMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++AA++E+ HD +GI WP +VAPF + L  +        +A E++   L   
Sbjct: 459 SYGIGVERLLAALVEAHHDERGIRWPAAVAPFDLVLTVLPDRGGAVAEAAERLCGELGAA 518

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD  E+ G +FA A+L+G P ++ +G++ ++    E+  R  G   ++ L+  +
Sbjct: 519 GVRVLLDDRAERPGVKFADAELIGVPWRLTLGARGLAAGTAELTARADGSTRELGLDAAV 578


>gi|111023587|ref|YP_706559.1| prolyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|122955090|sp|Q0S235|SYP1_RHOSR RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|110823117|gb|ABG98401.1| proline--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 581

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 140/223 (62%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S+P L   + +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NGIGAQEISLPALLPREPYEASNRWTEYGDGLFRLKDRKGGDYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RLG+K + + A SG +GG  S EF+  ++ GE T V C
Sbjct: 184 ERIFSRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRC 226



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 2/160 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GH+F  G KY+   S    G +GK     MGSYG+G  R+VA + E  HD K
Sbjct: 416 VAARGIEIGHVFQLGRKYTDVFSVDVLGENGKPVRPTMGSYGVGVSRLVAVIAEQHHDEK 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  V+P  + ++ I   D+  R+  E + A L K G +V  DD     G +F  ++
Sbjct: 476 GLRWPAEVSPADVHVV-IANKDETAREGAEGLAAELDKAGLEVILDDRKASPGVKFKDSE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           LLG PL V+VG  +  + KVE++ R TG   +++ E  ++
Sbjct: 535 LLGVPLVVVVGRGW-GEGKVEVRDRFTGESREVAAESALS 573


>gi|120403299|ref|YP_953128.1| prolyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|152112935|sp|A1T7H2|SYP_MYCVP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119956117|gb|ABM13122.1| prolyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 585

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIENIVRNEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR +   + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRNNDYLLGPTHEEMFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y     +Y
Sbjct: 124 YSSYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDIDDDGLKNAYIAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF  L ++ + + A SG +GG  S EF+  +D GE T V C
Sbjct: 184 QRIFDLLKVRYVIVSAVSGAMGGSASEEFLAESDVGEDTYVRC 226



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 6/167 (3%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GH+F  G KY+    A   G +GK   + MGSYGIG  R+VA + E  HD  
Sbjct: 419 VAARGIEIGHVFQLGRKYADAFGADVLGENGKPVRLTMGSYGIGVSRLVAVIAEQHHDEL 478

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +V+PF + ++ I   D   R    ++ A L ++G DV  DD     G +F  A+
Sbjct: 479 GLRWPSTVSPFDVHVV-IANKDADARTGATELAAELDRLGVDVLLDDRTASPGVKFKDAE 537

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LLG P  V+VG  + +D  VE++ R  G + ++     ++ A+ R S
Sbjct: 538 LLGVPWIVVVGRGW-ADGIVELRDRFGGDKHEIP----VDGAAERIS 579


>gi|145594337|ref|YP_001158634.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|189083512|sp|A4X5V6|SYP_SALTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145303674|gb|ABP54256.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 595

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 142/240 (59%), Gaps = 3/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F   L   P  +E   H+L+ R  M+ Q  +GI+++LPLG + +  + A++R E
Sbjct: 1   MKMSTMFGATLHTAPGRSESEGHQLLQRAAMLRQVGQGIFAYLPLGWRTIRKIEAVLRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+S+P +  A+LW ++GRY + G E+ R  DR  + ++   THEE++T + RS
Sbjct: 61  LERVGGQEVSMPVVNPAELWKQTGRYFTIGPELARFRDRRGRDLVLAMTHEELVTFLGRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR+LP   +Q+Q KFRD+ RPR G++R REF+MKDAYSFD+   G    Y   + +
Sbjct: 121 EIESYRHLPRMVFQLQTKFRDDPRPRAGLIRVREFVMKDAYSFDVDAAGLAARYRAQYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDF 239
           YL IF R GL    + ++ G +GG L+HEF+ L   GE T + C  D   F    E   F
Sbjct: 181 YLTIFRRCGLPVAAVLSDVGMMGGSLAHEFVYLTPIGEDTLLIC--DSCGFAANREAATF 238



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 105/190 (55%), Gaps = 2/190 (1%)

Query: 259 TSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+   +  D+  E  ++  +ARG+EVG IF  GT+YS  + A +  ADG+   + MG 
Sbjct: 387 TGDITAARAGDACAECGSELRTARGVEVGQIFKLGTRYSTALGAEYLDADGQRKPLTMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R++A + E   D +G+  P ++AP+++ L  +        +   ++Y  L   G
Sbjct: 447 YGIGVGRLLACLAEEHRDERGLRLPVTIAPYQVHLTLLDDLASAAGELARRVYDELWAAG 506

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD  E+ G +FA AD++G PL+V +G + V++   E++ R TG+   +  +EV+ 
Sbjct: 507 VEVLFDDRDERAGVKFADADVIGLPLRVTIGRRSVANGAAEVRDRATGVTAQVPFDEVVA 566

Query: 437 YASHRFSNNR 446
               R +  R
Sbjct: 567 ELVRRIAALR 576


>gi|284992392|ref|YP_003410946.1| prolyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284065637|gb|ADB76575.1| prolyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 582

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 133/218 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P DAE+ SH+L++R G I + + G ++WLPLG +   NV  ++REE
Sbjct: 3   LRMSTLFLRTLRDDPADAEVPSHRLLVRAGYIRRAAPGGFTWLPLGYRVFRNVERVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MDRMGAQEVHFPALLPREPYEATNRWTEYGPNLFRLQDRRGADFLLGPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G+ R REF MKD+YSFD+   G   SY     +
Sbjct: 123 LYSSYKDLPLSLYQIQTKYRDEARPRAGLFRGREFTMKDSYSFDVDDAGLDKSYAAHRDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y+R+F RLGL  + + A SG +GG  S EF+     GE
Sbjct: 183 YIRVFDRLGLDYVIVSAMSGAMGGSRSEEFLHPTPIGE 220



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARG+E+GHIF  G KY+  +       +GK   V MGSYGIG  R VAA+ ES+HD  G+
Sbjct: 418 ARGVEMGHIFQLGRKYAEALDLKVLDENGKLVTVTMGSYGIGVSRAVAAIAESTHDELGL 477

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           +WP  VAP  + ++     D    +  E +   L   G  V +DD  +   G +F  A+L
Sbjct: 478 VWPREVAPADVHVVA-TGKDAAVFETAEALAQELLAAGLTVLYDDRPKVSPGVKFKDAEL 536

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           LG P  V VG + +++  +E++ R TG RE++ + EV
Sbjct: 537 LGMPTIVTVG-RGLAEGVLELRDRATGEREEVPVGEV 572


>gi|295100007|emb|CBK89096.1| prolyl-tRNA synthetase, family II [Eubacterium cylindroides T2-87]
          Length = 564

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 95/250 (38%), Positives = 148/250 (59%), Gaps = 10/250 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   L+EN +D +  S  L++R GMI + S G+Y  +P+G+K L  +  I+REE
Sbjct: 1   MKLSKSFFYTLRENAKDEDSVSSNLLVRAGMIKKSSNGMYMIMPMGKKVLAKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A E+ +P L   +++++SGR + +G  M  + DR  K  + GPTHEE+       
Sbjct: 61  MDAKDAQELLMPALIPEEVYIKSGRREVFGSNMFTMNDRYMKRYVLGPTHEELFAVAASM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAY+FD+   G   +Y KM+ +
Sbjct: 121 DGKSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYTFDIDEAGLDEAYAKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+ L+   ++A++G +GG LS E+  ++  GE          D  +  E  DF 
Sbjct: 181 YCRIFDRMELEYKIVKADTGAMGGLLSEEYQAISGIGE----------DIVVGCEGCDFS 230

Query: 241 DIISLNSIVE 250
             + +  +V+
Sbjct: 231 SNLEITEVVD 240



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG++F  GTKY+  M+  +  A+ +   V MGSYGIG  R +AA++E  HD KGIIW
Sbjct: 402 GIEVGNLFKLGTKYAQSMNLYYTDANNQLQPVWMGSYGIGLERCMAAIVEQHHDDKGIIW 461

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  VAPF +S++ I   D+   +    +Y   +K    V  DD  E+ G +F   +L+G 
Sbjct: 462 PKEVAPFILSIVPISLKDEKQMEIANDLYNYCTKNKYSVLLDDRNERPGVKFKDMELIGI 521

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           P ++ VG K   +  +E  +R TG +E++S++ +
Sbjct: 522 PYRITVGRK-AQEGILEFSNRYTGEKEEVSIDSI 554


>gi|317177054|dbj|BAJ54843.1| prolyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 577

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 133/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLHQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|261839095|gb|ACX98860.1| prolyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 577

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 133/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 79/142 (55%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G DV  DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDVLLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
             L +I+G + + + + E   R
Sbjct: 532 ERLALIIGKQTLENKEFECIKR 553


>gi|320531911|ref|ZP_08032821.1| prolyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135880|gb|EFW27918.1| prolyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 610

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 134/217 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAIVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL  + + A +G +GG  S EF+   + GE
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLYPCEIGE 220



 Score =  119 bits (298), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 2/147 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KYS  +  +    +GK   V MGSYGIG  RV+AA+ E++HD KG+
Sbjct: 438 ARGIEIGHIFELGRKYSQALGLSVLDENGKARVVTMGSYGIGVSRVMAALAEANHDDKGL 497

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  +AP+ + ++     DQ   D   +I + L   G +V +DD  +   G +FA A+L
Sbjct: 498 TWPVQIAPYHVQVLA-TGKDQAVFDVAGQIASSLDADGVEVLYDDRRKVSAGVKFADAEL 556

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LG P  V+VG     +  VEI+ R TG
Sbjct: 557 LGLPYTVVVGRDLAREGTVEIRDRRTG 583


>gi|317010519|gb|ADU84266.1| prolyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 577

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 134/226 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQIGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDEEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I + LGL    + A+SG IGG+ S EF+VL + GE  +   K+
Sbjct: 181 YKEILNDLGLDFRIVEADSGAIGGNKSKEFVVLTECGEDTIVVCKN 226



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G DV  DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDVLLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESREFECIKRANLEKQTLKDTELEEKI 570


>gi|325067070|ref|ZP_08125743.1| prolyl-tRNA synthetase [Actinomyces oris K20]
          Length = 605

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 134/217 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAVIYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL  + + A +G +GG  S EF+   + GE
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLHPCEIGE 220



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KYS  +  T    +GK   V MGSYGIG  RV+AA+ E++HD KG+
Sbjct: 438 ARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMGSYGIGVSRVMAALAEANHDDKGL 497

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  +AP+ + ++     DQ   D  E+I + L   G +V +DD  +   G +FA A+L
Sbjct: 498 TWPVQIAPYHVQVLA-TGKDQAVFDVAEQIASSLDADGVEVLYDDRRKVSAGVKFADAEL 556

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           LG P  ++VG     +  VEI+ R TG R  +S +
Sbjct: 557 LGLPYTLVVGRDLAKEGTVEIRDRRTGERRSVSAD 591


>gi|159039093|ref|YP_001538346.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|189083509|sp|A8LYE7|SYP_SALAI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157917928|gb|ABV99355.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 584

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/225 (43%), Positives = 134/225 (59%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD V  +IR E
Sbjct: 3   LRMSTLLLRTLREDPADAEVPSHRLLLRAGYLRRAAPGGYTWLPLGKLVLDRVAEVIRTE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L  A+ +  SGR+  YG +++ L DR     +  PTHEE    + + 
Sbjct: 63  MLAIGDQEVHFPALLPAEPYRTSGRWTEYGDDLITLVDRRGAEHLLAPTHEEPAALLVKE 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR+ P   +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +
Sbjct: 123 LFTSYRDFPVGIFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRSA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y +IF RLGL    + A SG +GG  S EF+  +  GE   V C+
Sbjct: 183 YQKIFARLGLDYAVVHAVSGAMGGSASEEFLATSKIGEDVYVGCT 227



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G +Y+   +    G +G+     MG YGIG  R VA + E  HD +G++
Sbjct: 421 RGIEIGHIFQLGRRYTDAFTVDVLGPEGQSVRPTMGCYGIGVSRAVAVIAEQHHDERGLV 480

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP  + L+      QV  +    +  RL++ G  V  DD G    G +F  A+L+
Sbjct: 481 WPTEVAPCDVHLVAAGRGPQV--ETALGLGNRLAEAGLRVLVDDRGHVSAGVKFTDAELV 538

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G P  V+VG +  +D   E++ R +G R D+ ++ ++ +
Sbjct: 539 GIPRTVVVGRRL-ADGYAEVRDRPSGKRADVRVDALVEH 576


>gi|28493150|ref|NP_787311.1| prolyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|81839144|sp|Q83GR4|SYP_TROWT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28476190|gb|AAO44280.1| prolyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 613

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 132/223 (59%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S +     +E+P   E   +  +LR G I Q   GI+SW+PLG K    +  IIR E  +
Sbjct: 6   SGFLFRTFREDPATTESRGYGFLLRAGYIRQTGSGIFSWMPLGLKVRHKIENIIRYEMGQ 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             AIE+  P L SADL+ +SGR+  YG ++ RL DR     +  PTHEE  T + +    
Sbjct: 66  VNAIEVLFPALFSADLFKQSGRWSEYGDDIFRLKDRRQGDYLLAPTHEEAFTQMMKEICT 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP T YQIQ K+RDELRPR G++RSREF MKDAYSFDL  +G + SY     +Y +
Sbjct: 126 SYRDLPRTVYQIQDKYRDELRPRAGLLRSREFSMKDAYSFDLDEKGLRQSYEAQKRAYKK 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           IF RL +  + ++A +G +GG +S EF+   + G+     + D
Sbjct: 186 IFDRLKIDYVIVKANAGAMGGSVSEEFLHPTEMGDDTFVVTAD 228



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 8/181 (4%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +  T DV + K  D          RGIE+GH+F  G KYS  +       DG +  V MG
Sbjct: 407 FDCTLDVSSIKTGDKSEWGPVTVKRGIEIGHLFQLGLKYSNALGLKVLDKDGYNKAVFMG 466

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+ A + E + D +G+ WP  +APF + ++ + +       A  ++   L+  
Sbjct: 467 SYGIGVSRLFALIAEKNCDERGLKWPAVLAPFDLHVVLLSS-------ARAELIDSLTDC 519

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD     G +F  A L+G P  +++G K      VE+  R    R  + L+E+I
Sbjct: 520 GLDVLVDDRRVSPGVKFTDAQLIGVPKIIVIGDK-TRGEDVEVWDRANDQRTVLPLKEMI 578

Query: 436 N 436
            
Sbjct: 579 Q 579


>gi|322786154|gb|EFZ12760.1| hypothetical protein SINV_13030 [Solenopsis invicta]
          Length = 347

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 174/329 (52%), Gaps = 30/329 (9%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           LM+  G+I   S G+Y+ LPLG + L+ +  ++ +E    GA ++ +P L S  LW ++ 
Sbjct: 18  LMINYGIIKPVSIGMYALLPLGMRILNKLINLVDKEMTSIGAEKILLPALTSVALWKKTD 77

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDEL 143
           RYD    E+  L DR+ K  I  PTHEE + D+  S  + S ++LP   YQI  K+RDE+
Sbjct: 78  RYDCNKTELFTLMDRHKKEYILSPTHEEAICDLISSAGQFSAKSLPLKLYQISSKWRDEM 137

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           +PR G++RSREF+MKD Y+FD + + ++++YN +  SY  IF ++G++      + G IG
Sbjct: 138 KPRLGLLRSREFIMKDLYTFDTSLDNARYTYNLVCESYNNIFRKIGVEYTKSIGDMGTIG 197

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G +SHE+  +++ GE  +   +    F             S+N  + + T+     +++H
Sbjct: 198 GLMSHEYHYISNIGEDTILRCR-LCHF-------------SINQSISKTTSCPECKNELH 243

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                              EVGH F   TKYS P+ A +   + K   + MGS+G+G  R
Sbjct: 244 QHT--------------AAEVGHTFLLDTKYSQPLKALY-VEENKSKPMIMGSFGLGLSR 288

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++   +E       + WP  +AP+ I +I
Sbjct: 289 IITLAVEILSTKNELRWPVKLAPYTICVI 317


>gi|218132358|ref|ZP_03461162.1| hypothetical protein BACPEC_00217 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992696|gb|EEC58698.1| hypothetical protein BACPEC_00217 [Bacteroides pectinophilus ATCC
           43243]
          Length = 578

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 131/217 (60%), Gaps = 1/217 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +E P D  I S++  +R G I   + GIYS  P  ++    +  IIREE +  G  E+ 
Sbjct: 11  FKEKPADCVIDSYEFCIRGGYIKYVANGIYSLFPPMRRITQKIEKIIREEMDSVGCQEVL 70

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P    + LW ESGRY S G E+LR  DRN   M+ G THEE    + R + +SY   PF
Sbjct: 71  FPVTLPSSLWEESGRYQSVGDELLRFKDRNGSQMVLGMTHEEAAVHLVREYGRSYARYPF 130

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + YQIQ KFRDE RPR G++R REF MKDAYSF LT +  +  Y +M  SY RIF ++G+
Sbjct: 131 SIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHLTQKSLEDYYQQMANSYNRIFAKVGI 190

Query: 191 -KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            + I ++++SG IGG++SHE+++L D GE  +    D
Sbjct: 191 PEVISVKSDSGMIGGNVSHEYMLLCDAGEDSIVLCDD 227



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 93/157 (59%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIEVG+IF  GTKYS  M   +   +G++    MG YGIG  R+ A++ E+ HD  G 
Sbjct: 403 SRGIEVGNIFQLGTKYSDAMGLKYVDTNGEEKVPIMGCYGIGIGRLAASICEAHHDDYGP 462

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP SVAP+++ +  ++A    C++  ++IY  L     +V +DD     G  F+ ADLL
Sbjct: 463 IWPISVAPWQVHICCMRADKIECKEVTDRIYNELQSSNVEVLYDDRKVSAGVMFSDADLL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P+++I G K +   KVEI  R   +++ + ++ V+
Sbjct: 523 GIPIRIIAGPKNIEQGKVEILTRNKAVKKLVDIDSVV 559


>gi|50954884|ref|YP_062172.1| prolyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81826655|sp|Q6AEX8|SYP_LEIXX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50951366|gb|AAT89067.1| prolyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 590

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 132/217 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R + YFL  L+E+P DAE+ SH+L++R G I + + G+++WLPLG +    +  IIREE 
Sbjct: 4   RLTNYFLRTLREDPADAEVTSHRLLVRAGYIRRQAPGVFAWLPLGLRVKAKIERIIREEL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR++ YG  +  L DR     +  PTHEE  T + +  
Sbjct: 64  AAAGAHEVHFPALLPREPYEITGRWEEYGDALFHLKDRKGADYLLAPTHEEAFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +QIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLTIFQIQDKYRDEARPRAGLLRGREFTMKDAYSFDATDAGLDVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL  + ++A++G +GG  S EF+     GE
Sbjct: 184 ERIFARLGLDFVIVQADAGAMGGSRSEEFLHPTPIGE 220



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 5/183 (2%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           +  T +V   K  D  P+       ARG+E+GH+F  G KY+  +  T    +GK   V 
Sbjct: 403 WDGTVEVAEVKAGDPAPDGSGPVELARGMEIGHVFQLGRKYADALGLTVLDENGKLVTVT 462

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R++A + E ++D KG++WP++VAPF + ++     +QV  D  E+  A+L 
Sbjct: 463 MGSYGIGVTRILAIIAEENNDDKGLVWPEAVAPFDVHVV-AAGREQVAFDVAEQAVAQLE 521

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            VG DV +DD  +   G +F  A+L+G P  ++VG +  +  +VE+  R  G    + L 
Sbjct: 522 AVGLDVLYDDRPKVSPGVKFGDAELIGVPRVLVVG-RGAAQGEVELWDRRGGNHTTLPLS 580

Query: 433 EVI 435
           E +
Sbjct: 581 EAV 583


>gi|317181547|dbj|BAJ59331.1| prolyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 577

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 133/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     ++    +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLDKEFSNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|28572736|ref|NP_789516.1| prolyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|81839165|sp|Q83HI1|SYP_TROW8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28410869|emb|CAD67254.1| prolyl-tRNA synthetase [Tropheryma whipplei TW08/27]
          Length = 601

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 132/223 (59%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S +     +E+P   E   +  +LR G I Q   GI+SW+PLG K    +  IIR E  +
Sbjct: 6   SDFLFRTFREDPATTESRGYGFLLRAGYIRQTGSGIFSWMPLGLKVRHKIENIIRYEMRQ 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             AIE+  P L SADL+ +SGR+  YG ++ RL DR     +  PTHEE  T + +    
Sbjct: 66  VNAIEVLFPALFSADLFKQSGRWSEYGDDIFRLKDRRQGDYLLAPTHEEAFTQMMKEICT 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP T YQIQ K+RDELRPR G++RSREF MKDAYSFDL  +G + SY     +Y +
Sbjct: 126 SYRDLPRTVYQIQDKYRDELRPRAGLLRSREFSMKDAYSFDLDEKGLRQSYEAQKRAYKK 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           IF RL +  + ++A +G +GG +S EF+   + G+     + D
Sbjct: 186 IFDRLEIDYVIVKANAGAMGGSVSEEFLHPTEMGDDTFVVTAD 228



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 8/186 (4%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +  T DV + K  D          RGIE+GH+F  G KYS  +       DG +  V MG
Sbjct: 407 FDCTLDVSSIKTGDKSEWGPVTVKRGIEIGHLFQLGLKYSNALGLKVLDKDGYNKAVFMG 466

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+ A + E + D +G+ WP  +APF + ++ + +       A  ++   L+  
Sbjct: 467 SYGIGVSRLFALIAEKNCDERGLKWPAVLAPFDLHVVLLSS-------ARAELIDSLTDC 519

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD     G +F  A L+G P  +++G K      VE+  R    R  + L+E+I
Sbjct: 520 GLDVLVDDRRVSPGVKFTDAQLIGVPKIIVIGDK-TRGEDVEVWDRANDQRTVLPLKEMI 578

Query: 436 NYASHR 441
                R
Sbjct: 579 QGVIQR 584


>gi|317013684|gb|ADU81120.1| prolyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 577

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 133/224 (59%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  +  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENVTHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLGEEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVC 224



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G DV  DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDVLLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTIKDTELEEKI 570


>gi|326771743|ref|ZP_08231028.1| proline--tRNA ligase [Actinomyces viscosus C505]
 gi|326637876|gb|EGE38777.1| proline--tRNA ligase [Actinomyces viscosus C505]
          Length = 610

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 134/217 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAVVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL  + + A +G +GG  S EF+   + GE
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLHPCEIGE 220



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 88/149 (59%), Gaps = 2/149 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KYS  +  T    +GK   V MGSYGIG  RV+AA+ E++HD KG+
Sbjct: 438 ARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMGSYGIGVSRVMAALAEANHDDKGL 497

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  +AP+ + ++     DQ   D  E+I + L   G +V +DD  +   G +FA A+L
Sbjct: 498 TWPAQIAPYHVQVLAT-GKDQAVFDVAEQIASSLDADGVEVLYDDRRKVSAGVKFADAEL 556

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           LG P  ++VG     +  VEI+ R TG R
Sbjct: 557 LGLPYTLVVGRDLAKEGTVEIRDRRTGER 585


>gi|320528402|ref|ZP_08029564.1| prolyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131316|gb|EFW23884.1| prolyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 561

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/224 (42%), Positives = 138/224 (61%), Gaps = 1/224 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           ++ YF  I +EN +D +  S  L++R GMI + S G+Y  LP+G + L  + AIIR+E N
Sbjct: 4   KNSYFFTI-RENAKDEDSVSSNLLVRAGMIKKSSAGVYMMLPMGNRVLSKIYAIIRDEMN 62

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+S+P+L   +++V SGR   +GK M  L DR     + GPTHEE+     +  I
Sbjct: 63  KIDCQELSMPSLIPEEVYVSSGRRAGFGKGMFSLEDRKGVPYVLGPTHEELFAMAAKMQI 122

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SY+++PF+ YQIQ KFRDE RPR+G++R REF MKD+Y+FD    G   SY K F +Y 
Sbjct: 123 RSYKDMPFSLYQIQTKFRDEPRPRYGLIRVREFTMKDSYTFDKDEAGLDVSYAKQFNAYK 182

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            I +RL L    +RA++G +GG LS EF  +   GE  +  S D
Sbjct: 183 NIMNRLHLDYRIVRADTGVMGGLLSEEFQAITPLGEDILVLSDD 226



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 4/190 (2%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           V Q         D+ N +  D  P  + V   A GIEVG+ F  GTKYS  +   +   +
Sbjct: 368 VNQRDFTLTGHGDLRNIQEGDKNPNGEGVVHFAHGIEVGNTFKLGTKYSKALDLQYLDQN 427

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            +  YV MGSYGIG  R +AA+ E + D  GI WP  +APF+++++ I   D+       
Sbjct: 428 NQLQYVWMGSYGIGPARAMAALAEQNADENGINWPKDLAPFQVAVVIISMKDEEQVRIGN 487

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +++  L   G +V  D+  E+ G +F   +L+G P ++ VG + V+D KVE+K R TG  
Sbjct: 488 ELHDELQAQGIEVVLDNRDERPGVKFKDMELIGIPFRITVG-RGVADGKVELKSR-TGES 545

Query: 427 EDMSLEEVIN 436
            ++ + E I+
Sbjct: 546 MEVPVTEAID 555


>gi|328947267|ref|YP_004364604.1| Prolyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447591|gb|AEB13307.1| Prolyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 603

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 138/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+     L+++P +A I+SH+LM+R  +I +   G+Y+++P G +A   +  II+EE
Sbjct: 1   MKTSQIPFRTLRDSPSEAIISSHQLMMRADLIRKLGNGLYTYMPFGLRAYRKLEKIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              +GA+E     +   D+W ESGR+++ G +ML+  +R  + M+  PT EE  T I R 
Sbjct: 61  IEASGAMEFKPTVIVPGDIWKESGRWETMGPQMLKAQNRQQQDMVVSPTAEEAYTAIMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  K+RDE+RPR+GVMR REF M D Y+ +   E    SY     +
Sbjct: 121 GLTSYKQLPINCYQINTKYRDEIRPRYGVMRGREFNMMDGYTLNADDESLDQSYQAYAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFC 223
           YLRIF RLGL  I ++A++G +GG  S EF+V ++ G +T + C
Sbjct: 181 YLRIFKRLGLDVITVKADTGAMGGSGSEEFMVESEIGDDTLILC 224



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 107/184 (58%), Gaps = 5/184 (2%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+   K  D  P   +   + +G E+GHIF  G KY+  M+ T+   +GK     MG 
Sbjct: 412 TADLRTAKAGDICPVCGKPFYTTKGNELGHIFKLGKKYTESMNVTYLDKNGKSAVPTMGC 471

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  RV+A++IE+ HD +GIIWP S AP++++++ IK +    ++A +KIY  L K  
Sbjct: 472 YGIGVDRVLASIIEAFHDDRGIIWPMSTAPYQVAIVPIK-YSGAMKEAADKIYDELLKAS 530

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F   DL+GFP+++ VG K + +  VEIK R +   E + LE    
Sbjct: 531 VEVLLDDRDERPGVKFNDMDLIGFPVRITVGDKNLPN--VEIKMRSSEQAELVPLENAAA 588

Query: 437 YASH 440
            AS 
Sbjct: 589 KASE 592


>gi|108562666|ref|YP_626982.1| prolyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|123373844|sp|Q1CUR4|SYP_HELPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|107836439|gb|ABF84308.1| prolyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 577

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 133/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I + LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILNDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKN 226



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLRASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +I+G + + + + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIIGKQTLENKEFECIKRANLEKQTIKDIELEEKI 570


>gi|261837685|gb|ACX97451.1| prolyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 577

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +     + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENATHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQST 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRVVEADSGAIGGSKSKEFVVLTECGEDTIVVCKN 226



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDNLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|254778944|ref|YP_003057049.1| prolyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254000855|emb|CAX28787.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) (Global RNA
           synthesis factor) [Helicobacter pylori B38]
          Length = 577

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R++ A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLGAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +I+G + +   + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEKI 570


>gi|108799043|ref|YP_639240.1| prolyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868158|ref|YP_938110.1| prolyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126434646|ref|YP_001070337.1| prolyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|122977105|sp|Q1BAA0|SYP_MYCSS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112933|sp|A1UER2|SYP_MYCSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108769462|gb|ABG08184.1| prolyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119694247|gb|ABL91320.1| prolyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126234446|gb|ABN97846.1| prolyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 584

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+Y+WLPLG +    +  I+R+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYTWLPLGLRVFRKIEQIVRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +  
Sbjct: 64  TAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLKDRRDNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   +QIQ K+RDE RPR G++R REF+MKD+YSFD+  +G K +Y+    +Y
Sbjct: 124 YSSYKDFPLILFQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDDGLKTAYHLHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RLG+  + + A SG +GG  S EF+  ++ GE T V C
Sbjct: 184 QRIFARLGVHYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRC 226



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 91/157 (57%), Gaps = 2/157 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIE+GHIF  G KY+   SA   G DGK   + MGSYGIG  R+VA + E  HD  
Sbjct: 420 VSARGIEIGHIFQLGRKYTEAFSADVLGEDGKPVRLTMGSYGIGVSRLVAVIAEQQHDEL 479

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +VAPF + ++ I   D   R    ++   L ++G +V  DD     G +F  A+
Sbjct: 480 GLRWPAAVAPFDVHVV-IANKDDGARTGATELAGELDRLGLEVLLDDRKSSPGVKFKDAE 538

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           LLG P  V+VG  +  D  VE++ R +G + ++ +++
Sbjct: 539 LLGVPWIVVVGRGW-GDGVVELRDRFSGEKREIGVDD 574


>gi|118463800|ref|YP_882877.1| prolyl-tRNA synthetase [Mycobacterium avium 104]
 gi|152112931|sp|A0QIY9|SYP_MYCA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118165087|gb|ABK65984.1| prolyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 582

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RL ++ + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  
Sbjct: 416 VSARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP SVAPF + L+ I   D   R     +   L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPASVAPFDVHLV-IANKDAQARAGATALADDLDRLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LLG P  V+VG  + +D  VE++ R  G   +++
Sbjct: 535 LLGVPWIVVVGRGW-ADGVVELRDRFAGQTRELA 567


>gi|254776130|ref|ZP_05217646.1| prolyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 582

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RL ++ + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  
Sbjct: 416 VSARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP SVAPF + L+ I   D   R     +   L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPASVAPFDVHLV-IANKDAQARAGATALADDLDRLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LLG P  V+VG  + +D  VE++ R  G   +++
Sbjct: 535 LLGVPWIVVVGRGW-ADGVVELRDRFAGQTRELA 567


>gi|41409011|ref|NP_961847.1| prolyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|81831677|sp|Q73VU8|SYP_MYCPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41397370|gb|AAS05230.1| ProS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 582

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF RL ++ + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  
Sbjct: 416 VSARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP SVAPF + L+ I   D   R     +   L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPASVAPFDVHLV-IANKDAQARAGATALADDLDRLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LLG P  V+VG  + +D  VE++ R  G   +++
Sbjct: 535 LLGVPWIVVVGRGW-ADGVVELRDRFAGQTRELA 567


>gi|308063100|gb|ADO04987.1| prolyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 577

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIASN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   + K+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNAKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D   +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDGAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTLKDIELEEKI 570


>gi|291538408|emb|CBL11519.1| prolyl-tRNA synthetase, family II [Roseburia intestinalis XB6B4]
          Length = 567

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 139/231 (60%), Gaps = 5/231 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 1   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITHKIEQILRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 60  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 120 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 179

Query: 180 SYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK-DF 227
           +Y RIF R G+ + + + ++SG +GG LSHEF++L   GE   V C++ DF
Sbjct: 180 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNECDF 230



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 92/155 (59%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIEVG+IF  G KY+  M  T+   +G+     MG YGIG  R+ AAV E+ HD  G 
Sbjct: 404 SRGIEVGNIFQLGDKYTKAMKMTYVDQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGP 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+AP+++ L  ++A ++  R   + +Y +L ++G +V +DD     G  F+ ADLL
Sbjct: 464 IWPKSIAPWQVHLCAVRADNEEVRKFADDLYEKLQEMGIEVIYDDRTVSAGVMFSDADLL 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G PL+VIV  + +    VE+  R   ++  + +EE
Sbjct: 524 GIPLRVIVSPRNMKQGVVEVASRDKTLQTQVKMEE 558


>gi|332673080|gb|AEE69897.1| proline--tRNA ligase [Helicobacter pylori 83]
          Length = 577

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRVVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD     G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDREAHFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|291535914|emb|CBL09026.1| prolyl-tRNA synthetase, family II [Roseburia intestinalis M50/1]
          Length = 567

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 139/231 (60%), Gaps = 5/231 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 1   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITRKIEQILRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 60  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 120 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 179

Query: 180 SYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSK-DF 227
           +Y RIF R G+ + + + ++SG +GG LSHEF++L   GE   V C++ DF
Sbjct: 180 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNECDF 230



 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 92/155 (59%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIEVG+IF  G KY+  M  T+   +G+     MG YGIG  R+ AAV E+ HD  G 
Sbjct: 404 SRGIEVGNIFQLGDKYTRAMKMTYVDQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGP 463

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+AP+++ L  ++A ++  R   + +Y +L ++G +V +DD     G  F+ ADLL
Sbjct: 464 IWPKSIAPWQVHLCAVRADNEEVRKFADDLYEKLQEIGIEVIYDDRTVSAGVMFSDADLL 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G PL+VIV  + +    VE+  R   ++  + +EE
Sbjct: 524 GIPLRVIVSPRNMKQGVVEVASRDKTLQTQVKMEE 558


>gi|328779973|ref|XP_001122171.2| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Apis mellifera]
          Length = 428

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 215/442 (48%), Gaps = 38/442 (8%)

Query: 2   RRSKYFLPILQE--NPRDAEI--ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           + S+ F P+       +  EI   S++ +L+ G+I Q + G+Y+ LPLG +  + + A++
Sbjct: 11  KLSQLFQPVTATIATTKQTEIRSKSYENLLKYGLIKQVTTGMYAILPLGLRIFNKLTALV 70

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
             E  + GA ++ +P L    LW ++ R ++   E+ ++ DR  +  I  PTHEE +  +
Sbjct: 71  DNEMQKIGAQKLLLPALTPTHLWKKTDRLNNV-TELFKIQDRAQRQYILSPTHEESICSV 129

Query: 118 FRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
             +  I S + LP   YQI  K+RDE++PRFG +RSREF+MKD Y+FD+    ++ +Y  
Sbjct: 130 MSTIGILSPKMLPLKLYQISNKWRDEIKPRFGFLRSREFMMKDLYTFDINLNNAQETYAL 189

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +Y  IF ++G+  I    + G IG  +SHE+  ++D GE  + C         PS  
Sbjct: 190 VCNAYENIFKKIGITYIKSIGDPGLIGDSISHEYHYISDIGE-DIVCI-------CPSCQ 241

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +  I   S   +         +  NEK                EVGH F   TKY++
Sbjct: 242 YSINKTICKESYCPK-------CKNAFNEK-------------SAAEVGHTFLLNTKYTI 281

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           P+    K  + +   + MG +G+G  R+   + E     + + WP ++AP+ + LI  KA
Sbjct: 282 PLEVKIK-INNESIPLVMGCFGLGLSRIFTVMTELLSTKEELRWPKNLAPYTVCLIPPKA 340

Query: 357 --HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
              ++      +++   L+++  D   DD     IG +F  A + GFP  +I+    +  
Sbjct: 341 GSKEENKSQYVKEVMEILNQLNIDTILDDRTNLTIGKRFMHARITGFPYVIIIDCSGLQI 400

Query: 414 SKVEIKHRLTGIREDMSLEEVI 435
           +++     + G  E  +L + +
Sbjct: 401 AEITGISCIAGALEKSTLSQSV 422


>gi|317012082|gb|ADU82690.1| prolyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 577

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 77/142 (54%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D   +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDGAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
             L +I+G + + + + E   R
Sbjct: 532 ERLALIIGKQTLENKEFECIKR 553


>gi|317180044|dbj|BAJ57830.1| prolyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 577

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|168334910|ref|ZP_02693030.1| prolyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 570

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 99/225 (44%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P++A+  SH  +LR G I Q + G+++ L   QK   N+  IIREE
Sbjct: 1   MLLSKLLGERFKEKPQEAKSISHIFLLRGGYIRQVANGLFTMLLPAQKVKVNIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+  P +   +LW ESGR++S G E+LR+ DR DK ++ G THEE    + RS
Sbjct: 61  MNKIDGQEVIFPVVLPGELWQESGRFESVGSELLRMKDRTDKDLVLGMTHEEAAVHLARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY   PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E     Y+K   +
Sbjct: 121 EAKSYTQYPFMIYQIQTKFRDEARSRGGLIRVREFTMKDAYSFHTSNEDLDAYYDKCLKA 180

Query: 181 YLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I+ R G+ + + + ++SG +GG++SHEF++LAD GE T V C
Sbjct: 181 YNEIYRRTGVPEVVCVESDSGMMGGNVSHEFMLLADIGEDTIVVC 225



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 1/155 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG+IF  GTKY+  M  T+   DGK     MG YGIG  R++A+ IE+ HD  G I
Sbjct: 402 RGIEVGNIFKLGTKYTDVMKMTYVDQDGKSKTPIMGCYGIGVGRLIASAIEAHHDDYGPI 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+AP+++ +  +K+          +IY +LS+   +V +DD G   G QFA ADLLG
Sbjct: 462 WPISIAPWQVHICALKSKTMDINAIGAEIYGKLSQ-EFEVIFDDRGAAPGVQFADADLLG 520

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            P+++++G K + +  VEI  R   I++ ++ E+V
Sbjct: 521 VPVRIVLGEKNLKNGNVEIVTRDKSIKKLIAKEDV 555


>gi|297379463|gb|ADI34350.1| prolyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 577

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++ ++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSTILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|225377425|ref|ZP_03754646.1| hypothetical protein ROSEINA2194_03073 [Roseburia inulinivorans DSM
           16841]
 gi|225210771|gb|EEG93125.1| hypothetical protein ROSEINA2194_03073 [Roseburia inulinivorans DSM
           16841]
          Length = 575

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/270 (39%), Positives = 153/270 (56%), Gaps = 14/270 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D ++ SH LM+R G +   + GIYS ++PL ++    +  IIRE
Sbjct: 1   MKLEKLVGDRFKERPADCQVDSHALMIRGGYMKNVANGIYSSYMPL-RRITRKIEQIIRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E +     E+  P +  A LW ESGRYDS GKE+LR  DRN   M+ G THEE    + R
Sbjct: 60  EMDAIDGQEVQFPVVMPASLWQESGRYDSIGKELLRFTDRNGAPMVLGMTHEEAAVQLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + +SY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   
Sbjct: 120 EYGQSYAKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHK 179

Query: 180 SYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENT 237
           +Y RI+ R G+ + + ++++SG +GG++SHEF++L   GE   V C++   D+    E  
Sbjct: 180 AYERIYARAGIPEVVSVKSDSGMMGGNVSHEFMLLTPIGEDSIVICNE--CDYRANMEAA 237

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +        +IVE  T      + VH  ++
Sbjct: 238 E--------NIVENETEAMQELTKVHTPEM 259



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 23/245 (9%)

Query: 200 GPIGGDLSHEFIVLAD---TGETQVFCSKDFMDFPIPSENTD--FDDI--ISLNSIVEQW 252
           GP+  + + + IVL D    G T + C  + +D+     N +  F D+  + L  +VE  
Sbjct: 331 GPV--NQNADCIVLFDRSLKGTTNLVCGANEVDYHYTGLNMEREFPDVEYVDLAKVVEGG 388

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             P      +                +RGIEVG+IF  GTKY+  M+ T+   DG     
Sbjct: 389 ICPCCGKKSL--------------TISRGIEVGNIFQLGTKYTKTMNMTYVDKDGISKNP 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R+ A++ E+ HD  G IWP S+AP+++ +  +    +  R+  + +Y  L
Sbjct: 435 IMGCYGIGVGRMAASICEAHHDDYGPIWPMSIAPWQVHICAMNLDKEGVREVADTLYENL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V +DD     G++F+ ADLLG P++V+V  + + +S VE+  R   + E + +E
Sbjct: 495 QNAGVEVIYDDRSVSAGNKFSDADLLGVPVRVVVSPRNLKESVVEVSTRDKSLMEKVPVE 554

Query: 433 EVINY 437
               Y
Sbjct: 555 NAEQY 559


>gi|317008889|gb|ADU79469.1| prolyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 577

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDEEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++ ++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSTILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +I+G + +   + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIIGKQTLESREFECIKRANLEKQTLKDIELEEKI 570


>gi|315586236|gb|ADU40617.1| proline--tRNA ligase [Helicobacter pylori 35A]
          Length = 577

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +I+G + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIIGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|188527045|ref|YP_001909732.1| prolyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|226701297|sp|B2US70|SYP_HELPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188143285|gb|ACD47702.1| prolyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 577

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|210134438|ref|YP_002300877.1| prolyl-tRNA synthetase [Helicobacter pylori P12]
 gi|226701295|sp|B6JKG9|SYP_HELP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|210132406|gb|ACJ07397.1| prolyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 577

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVC 224



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEKI 570


>gi|308061592|gb|ADO03480.1| prolyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 577

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIR---EDMSLEEVI 435
             L +IVG + +   + E   R    +   +D  LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKRTLKDTELEEKI 570


>gi|296171596|ref|ZP_06852836.1| proline--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894051|gb|EFG73813.1| proline--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 582

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 135/223 (60%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIERIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  DAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFLMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
            RIF+RL ++ + + A SG +GG  S EF+  +  GE T V C
Sbjct: 184 QRIFNRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           VSARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  
Sbjct: 416 VSARGIEVAHIFQLGRKYTDAFAADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDEL 475

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP SVAPF + L+ I   D   R     +   L ++G +V  DD     G +F  A+
Sbjct: 476 GLRWPSSVAPFDVHLV-IANKDAEARTGATGLATDLDRLGVEVLLDDRQASPGVKFKDAE 534

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LLG P  ++VG  + ++  VE++ R  G   ++++
Sbjct: 535 LLGVPWILVVGRGW-ANGVVELRDRFGGQTRELAV 568


>gi|297664845|ref|XP_002810834.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 436

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 134/209 (64%), Gaps = 1/209 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLNPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F+RLG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           L  + ++A+ G IGG +SHEF +  D GE
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGE 267


>gi|15644866|ref|NP_207036.1| prolyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|2501038|sp|P56124|SYP_HELPY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2313329|gb|AAD07305.1| prolyl-tRNA synthetase (proS) [Helicobacter pylori 26695]
          Length = 577

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVC 224



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +I+G + +   + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEKI 570


>gi|308184043|ref|YP_003928176.1| prolyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308059963|gb|ADO01859.1| prolyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 577

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 132/225 (58%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C 
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQ 225



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDTLLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +I+G + + + + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIIGKQTLENKEFECIKRANLEKQTIKDIELEEKI 570


>gi|208434185|ref|YP_002265851.1| prolyl-tRNA synthetase [Helicobacter pylori G27]
 gi|226701296|sp|B5ZA05|SYP_HELPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|208432114|gb|ACI26985.1| prolyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 577

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVC 224



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIVGKQALESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|308182413|ref|YP_003926540.1| prolyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308064598|gb|ADO06490.1| prolyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 577

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVC 224



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEKI 570


>gi|307636931|gb|ADN79381.1| prolyl tRNA synthetase [Helicobacter pylori 908]
 gi|325995521|gb|ADZ50926.1| Prolyl-tRNA synthetase [Helicobacter pylori 2018]
 gi|325997119|gb|ADZ49327.1| Prolyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 577

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVC 224



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G DV  DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDVLLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +I+G + +   + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEKI 570


>gi|317179366|dbj|BAJ57154.1| prolyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 577

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 131/226 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW  SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWERSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKN 226



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLT---GIREDMSLEEVI 435
             L +IVG + +   + E   R      + +D  LEE I
Sbjct: 532 ERLVLIVGKQTLESKEFECIKRANLEKQVLKDTELEEKI 570


>gi|329947841|ref|ZP_08294773.1| proline--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328523465|gb|EGF50563.1| proline--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 619

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/217 (41%), Positives = 134/217 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   I + + G+Y+WLPLG + L  + AI+R+  
Sbjct: 12  RLSTSFIRTLREDPADAEVASHRLLVRACYIRRAAPGVYTWLPLGLRTLRKIEAIVRQGM 71

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  ++ +  +GR++ YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 72  DAMGGQEVHFPALLPSEPYQATGRWNDYGPTLFKLHDRKDGDYLLAPTHEEMFTLAVKDL 131

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 132 YSSYKDLPAIVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDAY 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            RIF RLGL  + + A +G +GG  S EF+   + GE
Sbjct: 192 ERIFARLGLDYVIVNAMAGAMGGSHSEEFLYPCEIGE 228



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 2/149 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KYS  +  T    +GK   V MGSYGIG  RV+AA+ E++HD KG+
Sbjct: 446 ARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMGSYGIGVSRVMAALAEANHDDKGL 505

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP  +AP+ + ++     DQ   D  E++ + L   G +V +DD  +   G +FA A+L
Sbjct: 506 SWPVQIAPYHVQVL-ATGKDQAVFDVAEQVASALDADGVEVLYDDRRKVSAGVKFADAEL 564

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           LG P  ++VG     +  VEI+ R TG R
Sbjct: 565 LGLPYTLVVGRDLAKEGTVEIRDRRTGDR 593


>gi|298736816|ref|YP_003729346.1| prolyl-tRNA synthetase [Helicobacter pylori B8]
 gi|298356010|emb|CBI66882.1| prolyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 577

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/226 (42%), Positives = 132/226 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR +   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKNNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKN 226



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + + + + E   R    ++   D+ LEE I
Sbjct: 532 ERLALIVGKQTLENKEFECVKRANLEKQTIKDIELEEKI 570


>gi|207108695|ref|ZP_03242857.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 254

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVC 224


>gi|257413581|ref|ZP_04743496.2| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203071|gb|EEV01356.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 241

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 140/231 (60%), Gaps = 5/231 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 9   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITCKIEQILRE 67

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 68  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 127

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 128 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 187

Query: 180 SYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK-DF 227
           +Y RIF R G+ + + + ++SG +GG LSHEF++L   GE + V C++ DF
Sbjct: 188 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNECDF 238


>gi|330836102|ref|YP_004410743.1| Prolyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
 gi|329748005|gb|AEC01361.1| Prolyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
          Length = 586

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/224 (41%), Positives = 136/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P  A+   ++L+LR G I Q   GI++ LPLG +++  + +IIR+E
Sbjct: 1   MRMSALFSKTLREAPSGADAKGYELLLRAGFIRQLGAGIFTMLPLGYRSVKKIESIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +  AD+W  +GRY S  KEM R  DR  + M+   THEE +TD+ + 
Sbjct: 61  MDAIGGQEILMPVVNPADIWKSTGRYYSIDKEMSRFQDRVGRDMVLAMTHEEAVTDVAKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RD+ RPR G++R REF MKD+YSFD    G +  Y   + +
Sbjct: 121 EIDSYKRLPQLVYQLQTKWRDDPRPRAGLIRVREFTMKDSYSFDRDQAGMEKQYRAHYSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RIF   GL    + ++SG +GG ++HE++ L+  GE T + C
Sbjct: 181 YFRIFGHAGLPVTVVGSDSGMMGGKIAHEYMYLSPVGEDTIITC 224



 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 91/143 (63%), Gaps = 4/143 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++G+EVG+IF  GT+YS  M   ++  DG    V MGSYGIG  R++A + E  HD  G+
Sbjct: 409 SKGVEVGNIFQLGTRYSEAMGCLYQDEDGVRKPVIMGSYGIGVGRMLACLAEEYHDDSGL 468

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P +VAP+++ L+++   +QV     + IY RL+  G +V +DD  E  G +FA ADLL
Sbjct: 469 ALPVTVAPYQVHLVSLVKDEQV----GDTIYGRLTHAGIEVLYDDRKESAGVKFADADLL 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+++ VG++ + + KVE+K R
Sbjct: 525 GMPIRITVGNRSLKEGKVEVKLR 547


>gi|302525268|ref|ZP_07277610.1| prolyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302434163|gb|EFL05979.1| prolyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 578

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/215 (43%), Positives = 135/215 (62%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DAE+ SH+L++R G + + + G YSWLPLG + L  V  ++REE N 
Sbjct: 2   SSLFLRTLREDPADAEVPSHRLLVRAGYVRRVAPGGYSWLPLGLRVLRRVEEVVREEMNA 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +    
Sbjct: 62  IGAQEIQFPALLPREPYEATNRWTEYGDNLFRLKDRKGADYLLGPTHEELFALTVKGEYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG + SY     +Y++
Sbjct: 122 SYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDEGLERSYQAHRDAYIK 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +F RLG++ + + A SG +GG  S EF+ +A+ GE
Sbjct: 182 LFDRLGIEYVIVAATSGAMGGSASEEFLAVAENGE 216



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 100/161 (62%), Gaps = 2/161 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+ARGIE+GHIF  G KY+        G D K   + MGSYG+G  R+VA + E +HD +
Sbjct: 413 VAARGIEIGHIFQLGRKYTDAFEVDALGPDSKPVRITMGSYGVGVSRLVAVLAEQNHDEQ 472

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++WP  V+PF + ++ I   D+  R+  EK+ A L   G ++  DD     G +FA A+
Sbjct: 473 GLVWPREVSPFDVHVV-IAGKDETVREGAEKLAAELDAAGLEIILDDRKATPGVKFADAE 531

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           L+G P  ++VG + +++  VE+K R TG RE+++++ V+++
Sbjct: 532 LVGVPTILVVG-RGLANGLVEVKDRRTGEREEIAVDSVVDH 571


>gi|154486903|ref|ZP_02028310.1| hypothetical protein BIFADO_00736 [Bifidobacterium adolescentis
           L2-32]
 gi|154084766|gb|EDN83811.1| hypothetical protein BIFADO_00736 [Bifidobacterium adolescentis
           L2-32]
          Length = 611

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 149/263 (56%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   
Sbjct: 185 YERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEP 244

Query: 241 DIISLNSI--VEQWTAPYAATSD 261
           + I   +    E+   P AAT D
Sbjct: 245 EAIDFTATPAAEKRPTPDAATID 267



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 444 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDEKGLA 503

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++   L   G +V +DD  +   G +F  A+L+
Sbjct: 504 WPAVIAPAQVHVVAT-GKDAAAFEAAEQLIGELEAKGIEVIFDDRKKVSPGVKFKDAELI 562

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+  + G   V++  +E++ R
Sbjct: 563 GVPIIAVAGRDTVNNGTIEVRDR 585


>gi|237756770|ref|ZP_04585264.1| prolyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691073|gb|EEP60187.1| prolyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 162

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 114/162 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+F+P L+ENP DA + SH  ++R G I   S GIY +LPLG + L  +  IIR+ 
Sbjct: 1   MLASKFFMPTLKENPSDAVVPSHIYLVRGGFIRSLSAGIYEYLPLGLRVLRKIENIIRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+ +P L  A+LW E+GR+  YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDDSGALEVLLPILTPAELWKETGRWYVYGKELFRLKDRKDAEFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YS
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYS 162


>gi|229817161|ref|ZP_04447443.1| hypothetical protein BIFANG_02420 [Bifidobacterium angulatum DSM
           20098]
 gi|229784950|gb|EEP21064.1| hypothetical protein BIFANG_02420 [Bifidobacterium angulatum DSM
           20098]
          Length = 637

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 133/218 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G + + + GI++WLPLG   L+ +  IIREE
Sbjct: 36  LRMSTMFLRTLREDPADADVVSDKLLQRAGYLRKAAPGIWTWLPLGLNVLNKIENIIREE 95

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 96  MASINAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 155

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 156 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 215

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF RL L  +P+ A +GP+GG  S EF+   + GE
Sbjct: 216 YERIFKRLDLDYVPVHAMAGPMGGFESEEFLAPMEIGE 253



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD +G+ 
Sbjct: 475 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDERGLA 534

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D+   +  E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 535 WPSCIAPAQVHVVAT-GKDEKAFEGAEQLIAELEAKGVEVIFDDRKKVSPGVKFKDAELI 593

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P   +VG  +V+D  +EI+ R
Sbjct: 594 GVPQIAVVGRDYVNDGTIEIRDR 616


>gi|217033470|ref|ZP_03438900.1| hypothetical protein HP9810_1g84 [Helicobacter pylori 98-10]
 gi|216944175|gb|EEC23603.1| hypothetical protein HP9810_1g84 [Helicobacter pylori 98-10]
          Length = 577

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 97/226 (42%), Positives = 131/226 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ L    YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLSVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKN 226



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 412 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 472 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDRDARFGAKMRDFELIG 531

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +I+G + +   + E   R    ++   D  LEE I
Sbjct: 532 ERLALIIGKQTLESKEFECIKRANLEKQTLKDTELEEKI 570


>gi|15835287|ref|NP_297046.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270285461|ref|ZP_06194855.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270289472|ref|ZP_06195774.1| prolyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|301336858|ref|ZP_07225060.1| prolyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
 gi|13633968|sp|Q9PK01|SYP_CHLMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7190706|gb|AAF39493.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 579

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 141/229 (61%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MKTSLLFYRTSKNANKEASVLSYELLEKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQSA+LW ++GR++++  E L   L DR +K M   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQSAELWQKTGRWEAFLSEKLLYVLKDRENKEMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 SQWLTGRKQLPVHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVTADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 5/174 (2%)

Query: 269 DSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           D  P+N        +G+EV HIF  GT+Y+   S  F+  +G+     MG+YGIG  R +
Sbjct: 393 DLCPQNNEAPYEIFQGVEVAHIFNLGTRYTECFSVGFQDENGEKQLCWMGTYGIGVGRTL 452

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA IE   D KGI+WP +VAPF I+++     D        + Y  L+  G +   DD  
Sbjct: 453 AACIEQLADSKGIVWPLAVAPFSITIL-YNGGDTEGEAVASQFYQSLNTAGFEPLLDDRN 511

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           E++G +   +DLLG P ++I+G  F     +EI+ R +G + ++S E ++++ S
Sbjct: 512 ERLGFKLKDSDLLGIPYKLIIGKSFQKTGMLEIESR-SGEKYNISPENLLDWCS 564


>gi|291557497|emb|CBL34614.1| prolyl-tRNA synthetase, family II [Eubacterium siraeum V10Sc8a]
          Length = 574

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K      +E P D +I SH +M+R G I   + GI+S     ++    +  IIREE
Sbjct: 1   MKLDKLVGDRFKERPSDCQIDSHAIMVRGGYIKYMANGIFSSYTPTKRITKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P +  A LW ESGRYDS G E+LR  DRN   M+ G THEE    + R 
Sbjct: 61  MDKIDGQEVQFPVVMPASLWQESGRYDSIGSELLRFTDRNRMPMVLGMTHEEAAVHLVRE 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   +
Sbjct: 121 YGKSYTKYPFMIYQIQTKFRDEARPRGGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHKA 180

Query: 181 YLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R G+ + I ++++SG +GG +SHEF++L   GE  +
Sbjct: 181 YENIFRRAGVPEVISVKSDSGMMGGSISHEFMLLTPVGEDTI 222



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 91/156 (58%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIEVG+IF  GTKY+  M+ T+  ++G++    MG YGIG  R+ A+V E+ HD  G 
Sbjct: 402 SRGIEVGNIFQLGTKYTKTMNMTYLDSNGEEKTPIMGCYGIGVGRLAASVCEAHHDDYGP 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  +AP+++ +  +++ D   +   +K+Y  L   G +V +DD     G  F+ ADLL
Sbjct: 462 IWPMPIAPWQVHICAVRSDDADVKACADKLYNTLQNAGAEVIYDDRQVSAGVMFSDADLL 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL+V+V  + + D+  EI  R       + +EE 
Sbjct: 522 GVPLRVVVSPRNLKDNCCEISARDKSFSYKVPVEET 557


>gi|284044947|ref|YP_003395287.1| prolyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283949168|gb|ADB51912.1| prolyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 560

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 149/266 (56%), Gaps = 11/266 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S Y LP  ++ P DAE  SH+LM+R G+I Q   G++++LP G +    V  IIREE 
Sbjct: 3   RLSSYLLPTEKQAPADAEAISHQLMVRAGLIRQLGAGLWTYLPAGWRVHRRVEQIIREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P L  A+ W  +GR +    E+ +L DR    M+   THEE++T      
Sbjct: 63  DAIGGQEMLMPLLNPAEPWRRTGRIEI--DEIFKLEDRKGTEMVLAMTHEEIVTTHVAQV 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP   YQIQ+K RDE RPR GV+R+REF MKD+YSFD    G + SY K  V+Y
Sbjct: 121 VRSYRDLPQILYQIQVKERDEPRPRAGVLRTREFRMKDSYSFDRDEAGLEESYAKHIVAY 180

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF R GL+   + ++ G +GG  +HE++     GE +V  +  +      + N    +
Sbjct: 181 DRIFERTGLEWYRVESDVGMMGGTAAHEYMAPCAAGEDEVALAPGY------AANL---E 231

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKL 267
           + S +    +  AP +   +VH   L
Sbjct: 232 VASADPQPAELPAPLSQPEEVHTPGL 257



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 86/153 (56%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + IEVG+IF  GT+YS  + A+F    G    V MG YGIG  R+VAA +E   D  GI 
Sbjct: 394 KAIEVGNIFKLGTRYSSALGASFLDESGAQQLVTMGCYGIGPARIVAAAVEQYADDAGIA 453

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF   L+ I   +   R   +++Y  L   G DV +DD     G +FA A+LLG
Sbjct: 454 WPRALAPFDAELVVISRGESEERAFADRLYEELKATGLDVLYDDRDAGPGEKFADAELLG 513

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            PL+V VG + ++  ++E++ R    R  + LE
Sbjct: 514 APLRVTVGKRTLAAGELEVQLRRGRERRSVPLE 546


>gi|237802818|ref|YP_002888012.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804740|ref|YP_002888894.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273040|emb|CAX09953.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274052|emb|CAX10846.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
          Length = 581

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E L   L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 5/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S  F+  +G    
Sbjct: 379 PLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA IE   D KG++WP +V PF I+++     D        ++Y  
Sbjct: 439 CWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVTPFSITIL-YNGGDTEGEATALQLYQS 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ R +G + ++S 
Sbjct: 498 LNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSP 556

Query: 432 EEVINYASHRF 442
           E ++++ S   
Sbjct: 557 ENLLDWCSKNL 567


>gi|166154604|ref|YP_001654722.1| prolyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155479|ref|YP_001653734.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335871|ref|ZP_07224115.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|226699129|sp|B0B7W3|SYP_CHLT2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699130|sp|B0BC28|SYP_CHLTB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|165930592|emb|CAP04089.1| prolyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931467|emb|CAP07043.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 581

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E L   L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S  F+  +G    
Sbjct: 379 PLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D        ++Y  
Sbjct: 439 CWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTEGEATALQLYQS 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ R +G + ++S 
Sbjct: 498 LNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSP 556

Query: 432 EEVINYASHRF 442
           E ++++ S   
Sbjct: 557 ENLLDWCSKNL 567


>gi|296436840|gb|ADH19010.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/11222]
          Length = 581

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E L   L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S  F+  +G    
Sbjct: 379 PLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D        ++Y  
Sbjct: 439 CWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTEGEATALQLYQS 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +   +D  E++G +   +DLLG P ++I+G  F S   +EI+ R +G + ++S 
Sbjct: 498 LNTEGFEPLLNDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSP 556

Query: 432 EEVINYASHRF 442
           E ++++ S   
Sbjct: 557 ENLLDWCSKNL 567


>gi|296435914|gb|ADH18088.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437774|gb|ADH19935.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140274|gb|ADH97032.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 581

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E L   L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S  F+  +G    
Sbjct: 379 PLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D        ++Y  
Sbjct: 439 CWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTEGEATALQLYQS 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ R +G + ++S 
Sbjct: 498 LNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSP 556

Query: 432 EEVINYASHRF 442
           E ++++ S   
Sbjct: 557 ENLLDWCSKNL 567


>gi|109947885|ref|YP_665113.1| prolyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|123173273|sp|Q17W62|SYP_HELAH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109715106|emb|CAK00114.1| proS [Helicobacter acinonychis str. Sheeba]
          Length = 577

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 1/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQIGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR     +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKGNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           Y  I + LGL    + A++G IGG  S EF+VL + GE T V C 
Sbjct: 181 YKEILNDLGLDFRIVEADNGAIGGSKSKEFVVLTECGEDTIVVCQ 225



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 5/181 (2%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +R     + +EVGHIF     Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIIQVKESDCCPNCQRALKYHKSLEVGHIFKLSQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+V +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEVQKKLAFEVYERLLQRGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEV 434
           DV  DD   + G++    +L+G  L +IVG + + + + E   R    ++   D  LEE 
Sbjct: 510 DVLLDDRDVRFGAKMRDFELIGERLALIVGKQTLENKEFECIKRANLEKQTLKDRELEEK 569

Query: 435 I 435
           I
Sbjct: 570 I 570


>gi|76789124|ref|YP_328210.1| prolyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|114152182|sp|Q3KLW0|SYP_CHLTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76167654|gb|AAX50662.1| prolyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
          Length = 581

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E L   L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 5/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S  F+  +G    
Sbjct: 379 PLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA IE   D KG++WP +V PF I+++     D        ++Y  
Sbjct: 439 CWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVTPFSITIL-YNGGDTEGEATALQLYQS 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ R +G + ++S 
Sbjct: 498 LNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSP 556

Query: 432 EEVINYASHRF 442
           E ++++ S   
Sbjct: 557 ENLLDWCSKNL 567


>gi|255311199|ref|ZP_05353769.1| prolyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317500|ref|ZP_05358746.1| prolyl-tRNA synthetase [Chlamydia trachomatis 6276s]
          Length = 581

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E L   L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S  F+  +G    
Sbjct: 379 PLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D        ++Y  
Sbjct: 439 CWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTEGEATALQLYQS 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ R +G + ++S 
Sbjct: 498 LNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSP 556

Query: 432 EEVINYASHRF 442
           E ++++ S   
Sbjct: 557 ENLLDWCSKNL 567


>gi|15605118|ref|NP_219903.1| prolyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|6686306|sp|P36431|SYP_CHLTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3328819|gb|AAC67990.1| Prolyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|297748523|gb|ADI51069.1| Prolyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749403|gb|ADI52081.1| Prolyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 581

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRMSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E L   L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S  F+  +G    
Sbjct: 379 PLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D        ++Y  
Sbjct: 439 CWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTEGEATALQLYQS 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ R +G + ++S 
Sbjct: 498 LNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSP 556

Query: 432 EEVINYASHRF 442
           E ++++ S   
Sbjct: 557 ENLLDWCSKNL 567


>gi|225350874|ref|ZP_03741897.1| hypothetical protein BIFPSEUDO_02448 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158330|gb|EEG71572.1| hypothetical protein BIFPSEUDO_02448 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 611

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 134/218 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF+RL LK +P+ A +GP+GG  S EF+   + GE
Sbjct: 185 YERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGE 222



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 444 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDEKGLA 503

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 504 WPAIIAPAQVHVV-ATGKDAAAFEAAEQLIADLEAKGIEVIFDDRKKVSPGVKFKDAELI 562

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +E++ R
Sbjct: 563 GVPLIAVAGRDTVNNGTIEVRDR 585


>gi|212716449|ref|ZP_03324577.1| hypothetical protein BIFCAT_01373 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660702|gb|EEB21277.1| hypothetical protein BIFCAT_01373 [Bifidobacterium catenulatum DSM
           16992]
          Length = 611

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 134/218 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y RIF+RL LK +P+ A +GP+GG  S EF+   + GE
Sbjct: 185 YERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGE 222



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 444 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDEKGLA 503

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 504 WPAIIAPAQVHVV-ATGKDAAAFEAAERLIAELEAKGIEVIFDDRKKVSPGVKFKDAELI 562

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +E++ R
Sbjct: 563 GVPLIAVAGRDTVNNGTIEVRDR 585


>gi|300123658|emb|CBK24930.2| unnamed protein product [Blastocystis hominis]
          Length = 457

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 198/395 (50%), Gaps = 40/395 (10%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           +YS+LPLGQ+ LD V  II       GA +M +P +Q+ + W++SGR D  GKE+  L D
Sbjct: 1   MYSFLPLGQRVLDEVEKIIDRNLETIGAQKMQMPIVQNLNRWMKSGRRDQIGKELYTLKD 60

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R  + +   PT+EEV+T++ +  + +  N P   YQ   KFRDE+R + GV+RS+EFLM 
Sbjct: 61  RKGQELCLSPTNEEVITELVKDLVATPSNYPLMLYQTSPKFRDEMRLKAGVLRSKEFLMM 120

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D YSFD   + +  +++++   +  IF  L +    + A++G +GG  S E+      GE
Sbjct: 121 DLYSFDTNLKKANETFDQVDTCFSNIFRELEIPVEALEADNGIMGGSRSKEYQCCCGVGE 180

Query: 219 TQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            +V  CSK           + +    S+ ++++ +       S+  N+ LF         
Sbjct: 181 DRVTRCSK-------CGYKSLYTSSTSIPTVIDYF------FSETFNQLLFQ-------- 219

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + +E+GH F  G +YS   +   +G+      +QMG YG+G  R+V ++ E      G
Sbjct: 220 --QSLELGHSFVLGDRYSTLFNLQNRGSP-----LQMGCYGLGVSRIVGSLFELFGHSSG 272

Query: 338 IIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVG--CDVFWDDMGE-QI 388
           I++PD +  F + ++N           +    A  K    L  +G    + +DD  E   
Sbjct: 273 ILFPDPITTFDVVVLNTGTPIDRVFESEKTEAARAKTAELLDALGDALRICFDDRDELSA 332

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIK--HR 421
           G++   A+L+G  + VI G +F     +E++  HR
Sbjct: 333 GNRLMDAELMGARVAVIAGKEFAMGGNLEVRLLHR 367


>gi|306823404|ref|ZP_07456779.1| proline--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|309802595|ref|ZP_07696699.1| proline--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|304553111|gb|EFM41023.1| proline--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|308220659|gb|EFO76967.1| proline--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 611

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 147/263 (55%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   
Sbjct: 185 YERIFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEP 244

Query: 241 DIISLNSI--VEQWTAPYAATSD 261
           + I        E+   P AAT D
Sbjct: 245 EAIDCTDTPAAEKRPTPDAATID 267



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 444 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDDKGLA 503

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 504 WPAVIAPAQVHVVAT-GKDAAAFEAAEQLIAELEAKGIEVIFDDRKKVSPGVKFKDAELI 562

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +E++ R
Sbjct: 563 GVPLIAVAGRDTVNNGTIEVRDR 585


>gi|171741061|ref|ZP_02916868.1| hypothetical protein BIFDEN_00127 [Bifidobacterium dentium ATCC
           27678]
 gi|171276675|gb|EDT44336.1| hypothetical protein BIFDEN_00127 [Bifidobacterium dentium ATCC
           27678]
          Length = 611

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 147/263 (55%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   
Sbjct: 185 YERIFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEP 244

Query: 241 DIISLNSI--VEQWTAPYAATSD 261
           + I        E+   P AAT D
Sbjct: 245 EAIDCTDTPAAEKRPTPDAATID 267



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 444 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDDKGLA 503

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 504 WPAVIAPAQVHVVAT-GKDAAAFEAAEQLIAELEAKGIEVIFDDRKKVSPGVKFKDAELI 562

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +E++ R
Sbjct: 563 GVPLIAVAGRDTVNNGTIEVRDR 585


>gi|291299271|ref|YP_003510549.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290568491|gb|ADD41456.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 562

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 138/222 (62%), Gaps = 1/222 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L++ P +AE  SH+ ++R G I Q + G YS LPL  +    + A+IREE
Sbjct: 1   MRWSTLYAPTLRDFPAEAEAPSHQRLVRAGFIRQLAAGHYSLLPLAIRVRAKIMAVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E  +P +  A++W  SGR+D  G EM RL DR    +  G THEE+ T I  +
Sbjct: 61  LDRIGAQEFLLPAMHPAEIWHASGRWDVMGSEMFRLKDRKGAQLALGMTHEEIFTSIA-T 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  +YQ Q KFRDE RP+ G++R REF MKD+YSFDL   G   +++K   +
Sbjct: 120 ELNSYKQLPQIWYQFQTKFRDEPRPKGGLLRVREFTMKDSYSFDLDAAGLDAAFDKHRGA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           YLRIF RLG+ +IP+ A SG +GG  S EF+  A +GE  V 
Sbjct: 180 YLRIFERLGIPAIPVDASSGTMGGSGSTEFMSPAPSGEDLVM 221



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 90/154 (58%), Gaps = 2/154 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IEVGHIF  GTKYS  + A    A+GK   V MGSYGIG  R +AA++E+ HD  GI 
Sbjct: 400 RTIEVGHIFKLGTKYSEVLDAKVLDANGKAVPVVMGSYGIGVERAIAAIVEAHHDEAGIK 459

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAP+ ++++ +   D   R A E +Y +LS    DV  DD   + G++    +L+G
Sbjct: 460 WPVNVAPYTVAVVMMSTKDDEVRQAAENLYRQLSD--TDVILDDRDARPGAKLTDVELVG 517

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            P +V VG++ +    VEI  R TG  E + + E
Sbjct: 518 IPFRVTVGARGLKTGSVEITSRATGETETVPVAE 551


>gi|66819305|ref|XP_643312.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60471379|gb|EAL69339.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 674

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 139/223 (62%), Gaps = 2/223 (0%)

Query: 3   RSKYFLPILQENPRDAE-IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RS  F+P   +    ++ + S  LM + G+I + S G YS LPL QK ++N+  II EE 
Sbjct: 52  RSNLFIPFQNDQKIGSDMLESQLLMQKGGLIRRLSAGTYSTLPLAQKVMENIIKIIDEEM 111

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  +MS+P +   +LW ++GR+DS G ++++L DR  +     PTHEEV+T I  + 
Sbjct: 112 EKVGGQKMSMPKMLPRELWEKTGRWDSAGDDLIKLKDRKGEEYCLAPTHEEVITTIVANE 171

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             S  + P   YQI  K+RDE+RPRFG++R REF MKD YSFD + E ++ +Y ++  +Y
Sbjct: 172 SLSNSSFPIKLYQIGEKYRDEVRPRFGLLRGREFTMKDMYSFDTSKEAAEITYYQVKQAY 231

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
             I  RL L    + A+SG IGG++SHEF VLA+ GE + ++C
Sbjct: 232 HNILERLELPYACVEADSGNIGGNMSHEFQVLANVGEDSLIYC 274



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 17/181 (9%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES-SHDGK 336
           + RGIEVGHIFY GTKYS  + A + GA  +   ++MG +GIG  R++A ++E+ S +  
Sbjct: 496 TKRGIEVGHIFYLGTKYSSKLGAYYTGAAQQRIPLEMGCFGIGVSRLLATIVETFSKEET 555

Query: 337 GIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
           G IWP  VAP++I ++  ++K+   +     E++   +  +   +  +D  +     +  
Sbjct: 556 GFIWPQQVAPYQIIIVPKHLKSQLSLAESVSEQLQTEIPYLKSRIIIEDRSKAHFAQKVL 615

Query: 394 VADLLGFPLQVIV-----------GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  +G P  +++            S  V+  K+E K     + ++    ++INY  ++F
Sbjct: 616 ESKFMGIPYFLVIDNNNKSIELGESSTKVNSFKIEYKSETPTLIQNQF--DLINYFKNKF 673

Query: 443 S 443
           +
Sbjct: 674 N 674


>gi|298245367|ref|ZP_06969173.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297552848|gb|EFH86713.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 578

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/228 (41%), Positives = 134/228 (58%), Gaps = 6/228 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E   D E  +  L+ R G + Q + G+YS LPLG++ +  +  IIR E
Sbjct: 1   MRYSQLLGGTLRERAHDVESTNLDLLTRGGFVRQLTSGVYSMLPLGERVMRKLTEIIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWV------ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
             R G  E+S+P LQ  ++W       ++ R + YG  +  L DR ++ ++ GPTHEE+ 
Sbjct: 61  MERIGGQEVSMPVLQPREIWEARPQSGKASRAEGYGPVLFSLHDRRERELVLGPTHEEIC 120

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           T + +  I+SYR+LP   +Q+Q KFRDE R R G++R REFLMKD YSFD   EG   ++
Sbjct: 121 TLLAQEFIRSYRDLPRLVFQVQRKFRDEPRARGGLLRLREFLMKDLYSFDADEEGLNANF 180

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             +  +Y RIF R GL  I + A+SG IGG  S EFI L + GE  + 
Sbjct: 181 ELVREAYCRIFARCGLDFIVVEADSGAIGGKESLEFIALTEAGEDTIL 228



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 95/157 (60%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG E+GHIF  GT YS   +ATF  A+G+   + M SYGIG  R++A ++E  HD +G+ 
Sbjct: 413 RGCELGHIFKLGTIYSDLFNATFLDAEGRTQPLIMASYGIGISRLLACIVEQQHDARGLT 472

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAP+ +SL+ I    +    A E++YA L   G +V +DD  E  G +F  ADLLG
Sbjct: 473 WPLAVAPYAVSLVGIDLVKEEIGRAAEQLYADLCAAGVEVLFDDRHESAGIKFNDADLLG 532

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            PL+V+V  + +    VE+K R +   + +SL E +N
Sbjct: 533 LPLRVVVSKRSLKQGGVELKVRTSQESQIVSLSEALN 569


>gi|320162939|gb|EFW39838.1| prolyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 788

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 1/222 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  F P+      DA+  SH+ +   G++ QH+ GIY+  P+G +AL+NV  II EE   
Sbjct: 126 STLFAPLFAPLGADAKTLSHRYLTYAGLMVQHAAGIYALTPVGLRALENVTRIICEELEL 185

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA   ++P L + +LW ++GR+ S G+E+ RL DR  + M+ GPTHEE + ++  +   
Sbjct: 186 VGAQRTALPMLMTKELWDKTGRWTSSGQEVFRLQDRKGRDMLLGPTHEEAVCELAATKPL 245

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P   YQ+  KFRDE RPR G+MR REF MKD Y+FD+  E +  +Y+ +   Y R
Sbjct: 246 GRGQFPLMLYQLDRKFRDEARPRHGLMRGREFWMKDLYTFDVDIEHAAKTYDTICGVYGR 305

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           IF RLGL  +   A++G IGG  SHEF V++  GE T + CS
Sbjct: 306 IFDRLGLDYVRAEADTGNIGGVRSHEFHVISPAGEDTLLVCS 347



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 58/181 (32%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-HDG 335
           V+  G+EVGH F  G KYS P+  TF  A  K    +MG YG+G  R++AA++E+  H+ 
Sbjct: 543 VTKLGMEVGHAFLLGQKYSQPLGVTFTNAANKRVTTEMGCYGLGVSRILAALVETQLHNA 602

Query: 336 KGII---------------------------------WPDSVAPFKISL----------- 351
           +  I                                 WP  VAPF +             
Sbjct: 603 QTTIAQSPAASTTAPAGAAAAATPKHQQQTDLLTLVRWPIEVAPFAVCFSFGGLGLSDET 662

Query: 352 ------INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 + +  HD + R     + A L         D +G     Q  V+D+LG P+ + 
Sbjct: 663 RDKWQKVALALHDTIVRQGILPVNAML-------IDDRLGASAREQARVSDVLGVPINIT 715

Query: 406 V 406
           +
Sbjct: 716 I 716


>gi|119025474|ref|YP_909319.1| prolyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|152112217|sp|A1A0K4|SYP_BIFAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118765058|dbj|BAF39237.1| prolyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
          Length = 605

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 147/260 (56%), Gaps = 2/260 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE   
Sbjct: 2   STMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +    
Sbjct: 62  IDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAYER 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           IF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   + I
Sbjct: 182 IFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPEAI 241

Query: 244 SLNSI--VEQWTAPYAATSD 261
              +    E+   P AAT D
Sbjct: 242 DFTATPAAEKRPTPDAATID 261



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 438 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDEKGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++   L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPAVIAPAQVHVVAT-GKDAAAFEAAEQLIGELEAKGIEVIFDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+  + G   V++  +E++ R
Sbjct: 557 GVPIIAVAGRDTVNNGTIEVRDR 579


>gi|326793278|ref|YP_004311099.1| prolyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326544042|gb|ADZ85901.1| prolyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 568

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 134/225 (59%), Gaps = 2/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P +A   SH  +LR G + Q + GIYS LP  ++ +  +  IIR+E
Sbjct: 1   MLMSKLLGERFKEKPGEATSISHIYLLRGGYVRQVTNGIYSLLPPAKRVVSKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+  P     DLW ESGR+D+ G E++R  DR  K M+ G THEE    + R+
Sbjct: 61  MDAIDGQEVLFPVALPGDLWRESGRFDAVGSELVRFKDRGGKDMVLGMTHEEAAVHLART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY N PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E  +  Y +   +
Sbjct: 121 EAKSYNNYPFMIYQIQTKFRDEPRARGGLIRVREFTMKDAYSFHTSQEDLEAYYEQCLQA 180

Query: 181 YLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RIF R G+ +++ +++++G +GG ++HEF++L D GE T + C
Sbjct: 181 YHRIFARAGVPETVCVQSDTGMMGGKVAHEFMLLTDIGEDTIIIC 225



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 1/155 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+EVG+IF  GT+YS  M  T+  +DGK     MG YGIG  R++A +IE+ HD  G I
Sbjct: 403 RGVEVGNIFQLGTRYSESMGMTYIDSDGKAKTPIMGCYGIGVGRLLACIIEARHDEWGPI 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP+++ +  +K+          +IY +LS    +V  DD     G QFA ADLLG
Sbjct: 463 WPMSVAPWQVHICVLKSKKTDMDAIGNEIYNKLSS-KYEVIMDDRNVGAGVQFADADLLG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            P++V+VG K + + KVE+  R   +++ + L +V
Sbjct: 522 IPVRVVVGEKNLKEGKVELMTRDKSVKKLVDLGDV 556


>gi|167749838|ref|ZP_02421965.1| hypothetical protein EUBSIR_00806 [Eubacterium siraeum DSM 15702]
 gi|167657150|gb|EDS01280.1| hypothetical protein EUBSIR_00806 [Eubacterium siraeum DSM 15702]
          Length = 589

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/222 (42%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K      +E P D +I SH +M+R G I   + GI+S     ++    +  IIREE
Sbjct: 16  MKLEKLVGDRFKERPSDCQIDSHAIMVRGGYIKYMANGIFSSYAPTKRITKKIEQIIREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P +  A LW ESGRY+S G E+LR  DRN   M+ G THEE    + R 
Sbjct: 76  MDKIDGQEVQFPVVMPASLWQESGRYESIGSELLRFTDRNRMPMVLGMTHEEAAVHLVRE 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   +
Sbjct: 136 YGKSYTKYPFMIYQIQTKFRDEARPRGGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHKA 195

Query: 181 YLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y  IF R G+ + I ++++SG +GG +SHEF++L   GE  +
Sbjct: 196 YENIFRRAGVPEVISVKSDSGMMGGSISHEFMLLTPVGEDTI 237



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 90/156 (57%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIEVG+IF  GTKY+  M  T+  ++G++    MG YGIG  R+ A+V E+ HD  G 
Sbjct: 417 SRGIEVGNIFQLGTKYTKTMGMTYLDSNGEEKTPIMGCYGIGVGRLAASVCEAHHDDYGP 476

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  +AP+++ +  +++ D   +   +K+Y  L   G +V +DD     G  F+ ADLL
Sbjct: 477 IWPMPIAPWQVHICAVRSDDADVKACADKLYDTLQNAGAEVIYDDRQVSAGVMFSDADLL 536

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL+V+V  + + D+  EI  R       + +EE 
Sbjct: 537 GVPLRVVVSPRNLKDNCCEISARDKSFSYKVPVEET 572


>gi|159900080|ref|YP_001546327.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|226701298|sp|A9B562|SYP_HERA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159893119|gb|ABX06199.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 566

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 133/224 (59%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AE+A+H+L+LR G+  Q   G  + LPLG +    + AI+  E
Sbjct: 1   MRMSSGFGRTLREAPSEAELAAHQLILRAGLARQLLAGGMALLPLGMRVFRRIEAIMHAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E   P + +A LW ++GRY  YG+ MLR  +RN +A+++ PTHEE + ++ R 
Sbjct: 61  LAAIGAGEFRTPVVHAASLWEQTGRYAQYGEAMLRFNNRNQQALLFAPTHEEAVAELARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQI  K+RDELR R G++R REF M DAYS D    G    Y+++ ++
Sbjct: 121 EVDSYRQLPSLLYQIHTKYRDELRVRGGLLRLREFTMLDAYSLDTDWAGLDMVYDRVALA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           +  IF R G++   + A+ G +GG    E++  + +GE + V C
Sbjct: 181 FETIFERCGVRFTAVEADGGEMGGREPREYMAFSSSGEDSLVVC 224



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 112/186 (60%), Gaps = 5/186 (2%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           W A   A  D+ N +  D+ P      +  RGIE+GHIF  GT+Y+  + AT+    G+ 
Sbjct: 374 WQATVVA--DIANVEEGDACPVCGAALSLERGIEIGHIFKLGTRYTEALGATYLDPQGQA 431

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + MGSYGIG  R++  +IE  HD KGI+WP SVAPF + L+ + A   V  +A  ++Y
Sbjct: 432 QPIVMGSYGIGLERLLQVIIEQHHDEKGIVWPASVAPFDLHLVQLGASATVS-EAANQLY 490

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +LS+ G  V +DD  E  G +F  ADLLG PL++ VG + +  + VE++ R TG+ E +
Sbjct: 491 QQLSEAGLSVLYDDRNESAGVKFNDADLLGMPLRLTVGERGLKQNVVELRQRATGVVETI 550

Query: 430 SLEEVI 435
           +L++V+
Sbjct: 551 ALDQVV 556


>gi|255348758|ref|ZP_05380765.1| prolyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503298|ref|ZP_05381688.1| prolyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255506977|ref|ZP_05382616.1| prolyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|407685|gb|AAA23161.1| aminoacyl-tRNA synthetase [Chlamydia trachomatis]
 gi|289525435|emb|CBJ14912.1| prolyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296434987|gb|ADH17165.1| prolyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438707|gb|ADH20860.1| prolyl-tRNA synthetase [Chlamydia trachomatis E/11023]
 gi|745528|prf||2016314B AA-tRNA synthetase
          Length = 581

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNVNKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E L   L DR ++AM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENEAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSY 229



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S  F+  +G    
Sbjct: 379 PLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQL 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D        ++Y  
Sbjct: 439 CWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTEGEATALQLYQS 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ R +G + ++S 
Sbjct: 498 LNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSP 556

Query: 432 EEVINYASHRF 442
           E ++++ S   
Sbjct: 557 ENLLDWCSKNL 567


>gi|301117334|ref|XP_002906395.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262107744|gb|EEY65796.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 603

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 150/256 (58%), Gaps = 4/256 (1%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  + P  ++ P DA + SH+L++R G + +   G+++ LPLG++ +  + A+I +E  
Sbjct: 34  RSVLWAPTEKQAPSDAAVPSHQLLVRAGFVRKGGHGLFALLPLGRRVVAKLEALIDDEMC 93

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   + +  L   +LW +SGR+ S G E++ L DR +  +I GPTHEE +T +  +H 
Sbjct: 94  KIGGNRVDLTVLTPNELWKQSGRWQSRGPELMTLEDRREDLLILGPTHEESITSLVAAHY 153

Query: 123 KS--YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +    +     YQI  KFRDE+RPRFG++R+REF+MKD YSFD + E +  +Y  +  +
Sbjct: 154 NAAGTADSSLRLYQIGRKFRDEIRPRFGLLRAREFVMKDMYSFDTSYEKALQTYEDVTAA 213

Query: 181 YLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTD 238
           Y  I   RL L    + A+SG IGG+LSHEF VLAD GE  +  CS    D+    E  +
Sbjct: 214 YNEILISRLKLPVKRVEADSGNIGGNLSHEFHVLADVGEDAILSCSSSECDYAANVEKAE 273

Query: 239 FDDIISLNSIVEQWTA 254
            +  +S   + ++ +A
Sbjct: 274 GNLPVSSEELSDEVSA 289



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 9/153 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+FY G KYS P  AT+  A      ++MG YG+G  R+VAA +E+SHD  GI 
Sbjct: 427 RGIEVGHVFYLGQKYSKPFGATYTDAKNNKVSLEMGCYGLGVSRLVAAAVEASHDDHGIA 486

Query: 340 WPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSK------VGCDVFWDD-MGEQIGS 390
           WP  +AP+K+ +++I  K  D     A   +  +L+       V  DV  DD   E  GS
Sbjct: 487 WPMEIAPYKVLVMSIGGKKQDDPVSQAAWYVAGKLASGDVAGLVRDDVLLDDRWRESPGS 546

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           + A ++L+G+P +V+VG +F  +  VE++ R T
Sbjct: 547 KLAESELIGYPYRVVVGKRFTKEGLVEVQTRAT 579


>gi|154483386|ref|ZP_02025834.1| hypothetical protein EUBVEN_01089 [Eubacterium ventriosum ATCC
           27560]
 gi|149735896|gb|EDM51782.1| hypothetical protein EUBVEN_01089 [Eubacterium ventriosum ATCC
           27560]
          Length = 579

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/222 (41%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK      +E P +  I SH LM+R G I   + GIYS  P  ++    +  IIR+E
Sbjct: 1   MKLSKLVGDRFKERPANCLIDSHALMVRGGYIKNVANGIYSQFPPMKRISQKIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P      LW ESGRY+S G E+LR  DR    M+ G THEE    + R 
Sbjct: 61  MDKLDGQEVLFPVALPGSLWEESGRYESVGSELLRFTDRTGSKMVLGMTHEEASVQLVRE 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +  SY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y K++ +
Sbjct: 121 YANSYAKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLEQYYQKVYDA 180

Query: 181 YLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQV 221
           Y RIF R G+  + + +++SG +GG +SHE+++L   GE  +
Sbjct: 181 YSRIFARCGIPEVAIVKSDSGMMGGSISHEYMLLTPVGEDSI 222



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 102/163 (62%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIEVG+IF  GTKYS  M+ T+   +GK+ Y  MG YGIG  R+ A++ E  HD  G 
Sbjct: 402 SRGIEVGNIFQLGTKYSKAMNFTYTDENGKEQYPIMGCYGIGVGRMAASICEVRHDDYGP 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++AP+++ L  +++ D  C++  ++IY  L  +G +V +DD   + G+ FA ADLL
Sbjct: 462 IWPITIAPWQVHLCCLRSDDAECKEKADEIYETLQNMGIEVIYDDRKARPGAMFADADLL 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIRE-----DMSLEEVIN 436
           G P++V+V  + ++++ VEI  R   I +     D ++ EV N
Sbjct: 522 GVPVRVVVSPRNLAENVVEISTRDKSIDKQKTPVDQAVTEVQN 564


>gi|283455556|ref|YP_003360120.1| proS Prolyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283102190|gb|ADB09296.1| proS Prolyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 605

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 145/260 (55%), Gaps = 2/260 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE   
Sbjct: 2   STMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREEMAS 61

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +    
Sbjct: 62  IDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDLYS 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y R
Sbjct: 122 SYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAYER 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           IF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   + I
Sbjct: 182 IFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPEAI 241

Query: 244 SLNSI--VEQWTAPYAATSD 261
                   E+   P AAT D
Sbjct: 242 DCTDTPAAEKRPTPDAATID 261



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 438 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDDKGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPAVIAPAQVHVVAT-GKDAAAFEAAEQLIAELEAKGIEVIFDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL  + G   V++  +E++ R
Sbjct: 557 GVPLIAVAGRDTVNNGTIEVRDR 579


>gi|15611293|ref|NP_222944.1| prolyl-tRNA synthetase [Helicobacter pylori J99]
 gi|11135064|sp|Q9ZMJ6|SYP_HELPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4154734|gb|AAD05795.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 576

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 98/224 (43%), Positives = 130/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + S K   + G I+Q   GIY++LPL +K LD +  +  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSPKHPGKAGYIYQIGSGIYNFLPLAKKVLDKIENVTHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y  I   LGL    + A+SG IGG  S EF+VL + GE T V C
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVC 224



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++ ++E   D  G +
Sbjct: 411 KSLEVGHIFKLGQSYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSVILEQKSDDLGCV 470

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 471 WTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 530

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + +   + E   R    ++   D+ LEE I
Sbjct: 531 ERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEKI 569


>gi|34763882|ref|ZP_00144786.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886345|gb|EAA23616.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 175

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 112/153 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 5   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 65  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
            I SY++LP   Y IQ KFRDE RPRFG+MR R
Sbjct: 125 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGR 157


>gi|89898569|ref|YP_515679.1| prolyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|114152181|sp|Q253K4|SYP_CHLFF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89331941|dbj|BAE81534.1| prolyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 577

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 137/229 (59%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +   +DA + S++L+ + G I + +KG+Y++ PL  +    +  I+REE
Sbjct: 1   MRTSQLFYKTSKNANKDAAVLSYELLEKAGYIFKTAKGVYTYTPLFWRVALKMMDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E L   L DR DK +   PTHEEV+T   
Sbjct: 61  LNAIGGQELMLPILHPAELWQKTGRWEAFRSEGLLYTLTDREDKELCLAPTHEEVVTMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR+REFLM+D+Y+F  +PE     Y+K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAREFLMEDSYTFSDSPEQMNEQYDKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +Y +IF RL +K + + A+ G IG   S EF VL   GE  +  S D+
Sbjct: 181 RAYQKIFDRLEIKYVIVEADGGKIGKGKSEEFHVLCSLGEDTICVSGDY 229



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G+EV HIF  GT+Y+      F+   G+     MG+YGIG  R +AA +E   D +GI+W
Sbjct: 408 GVEVAHIFNLGTRYTECFDVGFQNEQGEQQTCWMGTYGIGIGRTLAACVEQLADDRGIVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++APF IS++     D   ++A EKIY  L   G     DD  E++G +   +DL+G 
Sbjct: 468 PKAIAPFDISIL-YNGGDSASQEAAEKIYTELQNSGYAPLLDDRNERLGFKLKDSDLIGI 526

Query: 401 PLQVIVGSKFVSDSKVEIKHR 421
           P ++I+G  F++   +EI+ R
Sbjct: 527 PYKLILGKTFLNSGTLEIESR 547


>gi|78778894|ref|YP_397006.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
 gi|114152228|sp|Q31C25|SYP_PROM9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78712393|gb|ABB49570.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 600

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I +   GIY+++P+  K ++ ++ II  
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVYSGIYAYMPIMLKVIEKISKIIEI 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  A+LW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPANLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K
Sbjct: 121 IASEIINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++
Sbjct: 181 VGNAYENIFKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTQ 229



 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 261 DVHNEKLFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +  N        +GIE+GHIF  G KYS  ++A F   DG    + MG Y
Sbjct: 409 DIRNAKKGDKIKINDNEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGHLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     DQ+ RD  E+IY        
Sbjct: 469 GIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDQIQRDLTEQIYNNFLVNKI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DV  DD  ++ G +F  A+L+G P Q+I+G   + +++VE+  R    +  +S  +++
Sbjct: 529 DVLLDDREDRAGVKFKDAELIGIPFQIIIGRDSI-NNEVELICRTNNTKFKISAHKLL 585


>gi|257456072|ref|ZP_05621275.1| prolyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257446530|gb|EEV21570.1| prolyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 578

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 140/226 (61%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+RS+ F+P L+E P +A + SH+L+LR GMI +   G++++LPLG +    V  I+REE
Sbjct: 1   MKRSQTFIPTLRETPAEAVVVSHQLLLRAGMIRRLGNGLFNYLPLGLRVFRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E     +   ++W ES R+ + G  +LR+ +R  + ++  PT+EE  T + R 
Sbjct: 61  IDAIGCLECKASVVAPGEIWQESKRWYTMGDGLLRMKNRLGQDLVVSPTNEESFTALMRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++ P + Y I  K+RDE+RPR+G+MR+REF MKDAYSF    E    +Y     +
Sbjct: 121 ELGSYKDYPLSVYHINTKYRDEIRPRYGLMRAREFTMKDAYSFHTNAECLDKTYRAFGEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCSK 225
           Y +IF R GL  I +RA+SG +GG  S EF+V +  G +T + C +
Sbjct: 181 YEKIFRRFGLSIIRVRADSGSMGGSGSEEFMVESAIGDDTLILCPQ 226



 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 5/187 (2%)

Query: 257 AATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   DV   K  DS P       S +G E+GHIF  GTKY+  M+ T+    G+  Y  M
Sbjct: 385 AMVYDVRVVKAGDSCPLCGTPFYSKKGNELGHIFKLGTKYTKSMNMTYLDESGQQQYPLM 444

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +A++IE  HD  GIIWP SVAP+ + ++ I+ ++   + A ++++  L+ 
Sbjct: 445 GCYGIGIDRALASIIEEHHDSNGIIWPMSVAPYHVGIVPIQ-YEGTMKAAADRLHDELTM 503

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G +F   DL+G P+++++  K + +  VE K R      +M L+ V
Sbjct: 504 RGIEVLLDDRVERPGVKFKDMDLIGLPIRIVISDKKLPN--VEFKFRSDTDPVNMPLDGV 561

Query: 435 INYASHR 441
            +Y   R
Sbjct: 562 ADYVVQR 568


>gi|115532348|ref|NP_001040689.1| Prolyl tRNA Synthetase family member (prs-2) [Caenorhabditis
           elegans]
 gi|3880329|emb|CAB04884.1| C. elegans protein T27F6.5a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 454

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 200/399 (50%), Gaps = 46/399 (11%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +H +++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++++P + +  LW 
Sbjct: 22  AHTMLVENGFILPTAKGFYSLLPLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWE 81

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR--SHIKSYRNLPFTFYQIQLKF 139
           ++GR+++ G EM+R  DR    M   PT EE+ T++    S +K  +  P   YQI  KF
Sbjct: 82  KTGRWEAMGPEMIRFHDRQQNHMCLQPTAEEMCTELIATLSPLKKSQ-FPLIVYQIGEKF 140

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH---RLGLKSIPMR 196
           RDE+ PRFG+MR R+FLMKD YSF    E S+ +Y ++   Y RIF    +L    I + 
Sbjct: 141 RDEMNPRFGLMRGRQFLMKDMYSFSTDAETSQQTYAQIRQIYDRIFGEILQLDEDVIKVE 200

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A+SG  GG +SHE+ + +   E       DF++F    +N +            ++  P 
Sbjct: 201 ADSGVHGGHISHEYHLKSSLEE-------DFVNFCENCKNHN------------KFEGPG 241

Query: 257 AATSDVHNE---KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            A  +   E   K    +P         +E+ H F+ GTKYS  + A F+G       + 
Sbjct: 242 PAKCEKCAENSSKTVQKIPS--------VEIAHTFHLGTKYSEALGAKFQGKP-----LD 288

Query: 314 MGSYGIGAMRVVAAVIE-SSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
           M  +GIG  R++ A I+  S   K +  P ++APF   +I  K+    V  +      +R
Sbjct: 289 MCCFGIGVTRLLPAAIDLLSVSDKALRLPRAIAPFDAVIIVKKSLMSNVIVEMASSSASR 348

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSK 409
             K G  +  DD  E   G +   A+ LG P  +++ ++
Sbjct: 349 YLKGG--ILLDDRVEMSAGKRIHDANRLGIPFILVIANE 385


>gi|312077863|ref|XP_003141488.1| hypothetical protein LOAG_05904 [Loa loa]
 gi|307763347|gb|EFO22581.1| hypothetical protein LOAG_05904 [Loa loa]
          Length = 515

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 220/473 (46%), Gaps = 65/473 (13%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLG--------------- 46
           R S   L  L    + A+I  H+LML   +I Q  KGIYS LP+G               
Sbjct: 72  RASTMLLGSLDVKAKTAQIF-HQLMLSKALIAQEHKGIYSILPIGIEKYIGLKWSLTVHF 130

Query: 47  -----QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                Q+ +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  EM  L D+ +
Sbjct: 131 AFFFGQRIIDKLVEVIETELNAIGAYKISMPILGAKEMWQKAGRWSTFESEMFHLNDKTN 190

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +     PTHEE++T +     +  + + P   YQ+  KFRDE     G +RSREFLM D 
Sbjct: 191 QVFCLQPTHEEMVTKLVAEQGELRKAIYPLMLYQMGPKFRDETVVGHGFLRSREFLMNDL 250

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           YSFD+T E +  +Y+ +   Y RIF  RLG+    +RA++G IGG++SHE+ +   T   
Sbjct: 251 YSFDITEENASDTYSLVSEVYQRIFRDRLGINFYTVRADTGNIGGEMSHEYHLPCRTSHD 310

Query: 220 QV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            + +C+K  +       N D      L S  +        TS +                
Sbjct: 311 SIAYCAKCSLGV-----NHDL-----LKSGEKPCCCDEEYTSII---------------- 344

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES-SHDGKG 337
            + IE+ H F  G  ++    A  +G       + M  +GIG  R++AA+I+S S   + 
Sbjct: 345 -KTIEIAHTFQLGDLFTKKFGAKHRG-----QLLIMNCFGIGIGRLIAALIDSMSPSARA 398

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC---DVFWDD-MGEQIGSQFA 393
           +  P  + PFK+++I             + I   LSK+     D+F DD +   IG +  
Sbjct: 399 LRLPYPLTPFKVAVILPNKTQPETMAFAQDIIGLLSKIPSLQDDIFVDDRLDNSIGRRLR 458

Query: 394 VADLLGFPLQVIVGS----KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           VA  LG P  ++VG+    K  S   VE       I E +S+ ++  +   RF
Sbjct: 459 VAANLGVPHILVVGNRTARKLTSQPTVEYYRTEAYIDEPISVGDIEYFEIPRF 511


>gi|308464804|ref|XP_003094666.1| CRE-PARS-2 protein [Caenorhabditis remanei]
 gi|308247063|gb|EFO91015.1| CRE-PARS-2 protein [Caenorhabditis remanei]
          Length = 470

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 204/413 (49%), Gaps = 56/413 (13%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           A+H++++  G I    KG YS LPLGQ+ +D +  I+  E  + GA+++ +P + +  LW
Sbjct: 21  AAHRMLIENGFILPTGKGFYSLLPLGQRVIDKLCRILDTEFQKAGAMKIGMPIVGTKTLW 80

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKF 139
            ++ R+D+ G EM++L DR    +   PT EE+ T++  S     ++  P   YQI  KF
Sbjct: 81  DKTKRWDAMGTEMIKLEDRQKAPLCLQPTAEEMCTELIASLPPLKKSQFPVMIYQIGDKF 140

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-------------- 185
           RDE+ PRFG+MRSR+FLMKD Y+F    E S+ +Y K+   Y +IF              
Sbjct: 141 RDEMNPRFGLMRSRQFLMKDMYTFSTDQEASRETYRKICRVYEKIFGQQLQLGGDLIKPI 200

Query: 186 ---HRLGL----KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              +RL L        + A+SG  GG +SHE+ + ++  E       DF++         
Sbjct: 201 SGQNRLNLILNYSLFQVEADSGIHGGHISHEYHLRSNLDE-------DFVNL-------- 245

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D   + N   +  T       D  ++K       +++VS+  +E+ H F+ GTKYS  +
Sbjct: 246 CDSCGTFNKSEDVTTLKKCPNCDSAHQK-------SRKVSS--VEIAHTFHLGTKYSETI 296

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIE-SSHDGKGIIWPDSVAPFKISLINIKA- 356
            A F+G       + M  +GIG  R++ A ++  S   K +  P ++APF  ++I  K+ 
Sbjct: 297 GAKFQGKP-----LDMCCFGIGVSRLLPATVDLLSCSEKAMRLPRAIAPFDAAIIVKKSL 351

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGS 408
              V  +      +R  K G  +  DD  E   G +   A+ LG P  +++ +
Sbjct: 352 MSNVIVEMTSSSASRYLKGG--ILLDDRIEMSAGRRIHEANRLGIPFIIVLAN 402


>gi|241818170|ref|XP_002416554.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|215511018|gb|EEC20471.1| tRNA synthetases class II, putative [Ixodes scapularis]
          Length = 410

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 196/398 (49%), Gaps = 43/398 (10%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +LML  G+I     G +  LPL  K+L+ +  +I  E    G  ++ +P L    L+ ++
Sbjct: 1   QLMLDYGLISPSGTGTFVLLPLATKSLERLVDLIDSELQSVGGQKILLPCLVPGSLFKKT 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEE-VMTDIFRSHIKSYRNLPFTFYQIQLK---F 139
           G+++  G E+ +L DR D     GPTHEE V   +      S R LP   YQ++ +   +
Sbjct: 61  GKWEDMGDELFKLKDRRDHDYCLGPTHEEAVSQLLASLPSLSLRCLPILLYQVRGRLSHY 120

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R  + P  G + +   L  D YSFD + E +  +Y+ +  +Y RI  RLG+  + ++A S
Sbjct: 121 RRCMAP--GFVATCGTLFADMYSFDRSAESAAETYDIVCTAYSRILERLGVPFVKVKASS 178

Query: 200 GPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           G +GG+ SHEF  L++ GE ++F C K  +   + ++ T+       N   +Q + P   
Sbjct: 179 GAMGGNYSHEFHFLSNIGEDRLFVCPKCHIG--VSADKTE-------NQPCDQCSTP--- 226

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                       L E      RG+EV H F  GT YS P+ A+F  +DGK+  + M  +G
Sbjct: 227 ------------LEEE-----RGVEVAHAFSLGTVYSDPLKASFMDSDGKNKALVMNCFG 269

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCRDACEKIYARLSK- 374
           IG  R++AA +E       + WP ++APFK++++  KA    ++V       + + LS  
Sbjct: 270 IGVTRLLAASLEVLSTQSQLRWPLAIAPFKVAVVTPKARSHEEEVGLPLSLHLTSCLSSQ 329

Query: 375 --VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSK 409
             +  DV  DD     IG +    D +G P  V+ G +
Sbjct: 330 DILAGDVLLDDRDSWTIGKRLKDLDHMGVPFVVVAGKR 367


>gi|225016294|ref|ZP_03705486.1| hypothetical protein CLOSTMETH_00197 [Clostridium methylpentosum
           DSM 5476]
 gi|224950969|gb|EEG32178.1| hypothetical protein CLOSTMETH_00197 [Clostridium methylpentosum
           DSM 5476]
          Length = 574

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 97/225 (43%), Positives = 132/225 (58%), Gaps = 2/225 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P DA I SH  ML+ G I Q   GIYS L   ++ ++ +  IIREE
Sbjct: 8   MLLSKLLGERYKEKPADASIPSHIFMLKGGYIRQVGNGIYSMLMPTKRIVNKIENIIREE 67

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+  P +   +LW ESGRY+S G E++R  DR+    + G THEE    + R+
Sbjct: 68  MDAIDGQEVLFPVVLPRELWDESGRYESVGSELVRFHDRSGGDYVLGMTHEEAAVHLARN 127

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY   PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E  +  Y+    +
Sbjct: 128 EAQSYAKYPFMIYQIQTKFRDEPRSRGGLIRVREFTMKDAYSFHTSQEDLERYYDICHKA 187

Query: 181 YLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
           Y RIF R+GL + I + ++SG +GG ++HEF++L D GE T V C
Sbjct: 188 YERIFERVGLPEVISVGSDSGMMGGAVAHEFMLLCDAGEDTIVTC 232



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 1/155 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+EVG+IF  GTKY+  M   +   DGK     MG YGIG  R+ A +IES HD  G I
Sbjct: 409 RGVEVGNIFQLGTKYTESMQMVYTDQDGKQQTPIMGCYGIGVGRLAACIIESHHDDYGPI 468

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAP++I +  +       +    ++Y +LSK   +V  DD G   G QFA ADLLG
Sbjct: 469 WPYAVAPWQIHICALSNKKMDVQPIARELYDKLSK-NYEVILDDRGANAGVQFADADLLG 527

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            P++++V  K + + +VEI  R   I+  + LE++
Sbjct: 528 VPIRIVVSVKNIENGEVEISTRDKSIQTKVKLEDI 562


>gi|167589833|ref|ZP_02382221.1| prolyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 382

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 194/426 (45%), Gaps = 62/426 (14%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           +A++    L  +    HQ + G+YSW+ LG +A   V  ++R+E +R G  E+ +  LQ 
Sbjct: 17  NAKLELTDLARKACFFHQDAAGLYSWMSLGLRAQRCVERVVRDEMDRAGFCEVQMSLLQD 76

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           ADLW +SGR D YG E++RL +R  +    G T EE+  ++ R+H     +L    YQ  
Sbjct: 77  ADLWRQSGRLDIYGDELMRLTNRAGRLFCLGATCEELAANMVRTHYNRT-DLSLGLYQFG 135

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            K+RDELR R G++R+REF+MKDAY+F  T +G++ +Y  +  +Y RIF RLGL +I   
Sbjct: 136 NKYRDELRTRGGLVRAREFIMKDAYAFHATDDGARAAYETVRDAYRRIFGRLGLDAIAKS 195

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            ++G IGG  S EF V+++ GE +    +      I      +  ++ L           
Sbjct: 196 GDNGEIGGRSSEEFHVVSELGEDEADGRRSLECAHIFDLGDRYSKVLGL----------- 244

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMG 315
                               V+A+G E   +  FG   S L M    +  DG+  +   G
Sbjct: 245 --------------------VNAKG-EFVRMGCFGVGISRLVMLLLDRQRDGRGFW---G 280

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           S       VV  VI+         W                      DA +++   L   
Sbjct: 281 SDAFNTFDVVLTVID---------WERQACQ----------------DAAQRLQRDLQAA 315

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD   Q G + A A+L+    +V+V  K ++  + E   R T   E +S E++ 
Sbjct: 316 GISVLVDDRVVQAGKKLADAELIACRQRVVVSRKAIASGRFEWMDRRTLACESVSAEDLA 375

Query: 436 NYASHR 441
            + + R
Sbjct: 376 GHCARR 381


>gi|15618411|ref|NP_224696.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|16752543|ref|NP_444805.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33241851|ref|NP_876792.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|13633970|sp|Q9Z851|SYP_CHLPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4376787|gb|AAD18640.1| Prolyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189180|gb|AAF38117.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33236360|gb|AAP98449.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 568

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 133/229 (58%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E L   L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +Y +IF RLGL  + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 SAYSKIFDRLGLAYVIVTADGGKIGKGKSEEFQVLCSLGEDTICVSGSY 229



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 269 DSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           D+ PEN     R   GIEV HIF  GT+Y+      F+   G+     MG+YGIG  R +
Sbjct: 393 DTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFQDEHGQTQQCWMGTYGIGVGRTL 452

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA +E   D +GI+WP ++APF I+ I     D V ++  E IY  L   G +   DD  
Sbjct: 453 AACVEQLADDRGIVWPKALAPFSIT-IAFNGGDTVSQELAETIYHELQSQGYEPLLDDRD 511

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E++G +   +DL+G P ++I+G  + S    EI+ R
Sbjct: 512 ERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR 547


>gi|269127985|ref|YP_003301355.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268312943|gb|ACY99317.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 565

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/222 (41%), Positives = 131/222 (59%), Gaps = 7/222 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P L+++P DAE A H+L++R G I + + G YS LP   +    +  +IR+E
Sbjct: 1   MRWSRFYAPTLRQDPADAETAGHRLLVRAGFIRRLAAGHYSLLPPAARVRSKIIEVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A+LW  +GR+D+ G+E  RL DR       G THEEV+  +  +
Sbjct: 61  MDRIGAQEVLLPALQPAELWRRNGRWDASGEETFRLTDRKGAEAALGTTHEEVVASLA-T 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP  +YQ Q  FRDE RPR G++  REF +KDAYS D      + S+     +
Sbjct: 120 ELGSYRRLPQLWYQFQTAFRDEARPRSGLLGLREFTLKDAYSLDADEAALEGSFQAHREA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y RIF RLGL   P+    GP GG L  EF+  ++ G+  V 
Sbjct: 180 YRRIFQRLGL---PVIEAQGP-GGSL--EFLCPSEAGDDAVV 215



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEV H+   G + +  + A   G DG +    MG Y IG  R +AA+ E+ HD  G+ WP
Sbjct: 403 IEVAHLRKPGRRCTEALGARVLGPDGTEITPLMGRYSIGVERAIAAIAETGHDDSGLRWP 462

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +APF +++  +   D     A E+IY  L+  G +   DD  E+ G++FA  +L+G P
Sbjct: 463 AGIAPFDVAVTLLDPRDDQVTAAAEQIYTALAAAGVETILDDRDERPGAKFADTELIGIP 522

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +V VG + +    VEIK R TG  + + + E 
Sbjct: 523 YRVTVGKRGLKSGTVEIKTRATGRTDTVPIPEA 555


>gi|15836031|ref|NP_300555.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|8978870|dbj|BAA98706.1| prolyl tRNA synthetase [Chlamydophila pneumoniae J138]
          Length = 568

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 133/229 (58%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E L   L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +Y +IF RLGL  + + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 SAYSKIFDRLGLAYVIVTADGGKIGKGKSEEFQVLCSLGEDTICVSGSY 229



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 4/156 (2%)

Query: 269 DSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           D+ PEN     R   GIEV HIF  GT+Y+      F    G+     MG+YGIG  R +
Sbjct: 393 DTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFLDEHGQTQQCWMGTYGIGVGRTL 452

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA +E   D +GI+WP ++APF I+ I     D V ++  E IY  L   G +   DD  
Sbjct: 453 AACVEQLPDDRGIVWPKALAPFSIT-IAFNGGDTVSQELAETIYHELQSQGYEPLLDDRD 511

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E++G +   +DL+G P ++I+G  + S    EI+ R
Sbjct: 512 ERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR 547


>gi|218513382|ref|ZP_03510222.1| prolyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 105

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 93/105 (88%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQERPML 105


>gi|29840011|ref|NP_829117.1| prolyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|81838013|sp|Q824A9|SYP_CHLCV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29834358|gb|AAP04995.1| prolyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 577

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  I+REE
Sbjct: 1   MKTSQLFYKTSKNANKEAAVLSYELLEKAGYIFKTAKGIYTYTPLFWRVALKMMDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E L   L DR DK +   PTHEEV++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTLTDREDKELCLAPTHEEVVSMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR+REFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAREFLMEDSYTFSDSPEQMNEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            +Y  IF RL +K + + A+ G IG   S EF VL   GE  +  S
Sbjct: 181 QAYQNIFDRLEIKYVIVEADGGKIGKGKSEEFHVLCSLGEDTICVS 226



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 6/168 (3%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G+EV HIF  GT+Y+      F+    +     MG+YGIG  R +AA IE   D +GI+W
Sbjct: 408 GVEVAHIFNLGTRYTECFEVGFQNEQEEQQTCWMGTYGIGIGRTLAACIEQLADDRGIVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++APF I+++     D   ++A EKIY  L   G     DD  E++G +   +DL+G 
Sbjct: 468 PKAIAPFDIAIL-YNGGDAASQEAAEKIYKDLQNYGYAPLLDDRNERLGFKLKDSDLIGI 526

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYASHRFSNNR 446
           P ++I+G  F +   +EI+ R    RE   +E  +  N+  + F   R
Sbjct: 527 PYKLILGKTFQNSGVLEIESR---SREKFFVEPKDFFNWCKNYFPKPR 571


>gi|269303377|gb|ACZ33477.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 568

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 131/229 (57%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E L   L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             Y +IF RLGL    + A+ G IG   S EF VL   GE  +  S  +
Sbjct: 181 SGYSKIFDRLGLAYAIVTADGGKIGKGKSEEFQVLCSLGEDTICVSGSY 229



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 269 DSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           D+ PEN     R   GIEV HIF  GT+Y+      F+   G+     MG+YGIG  R +
Sbjct: 393 DTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFQDEHGQTQQCWMGTYGIGVGRTL 452

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA +E   D +GI+WP ++APF I+ I     D V ++  E +Y  L   G +   DD  
Sbjct: 453 AACVEQLADDRGIVWPKALAPFSIT-IAFNGGDTVSQELAETLYHELQSQGYEPLLDDRD 511

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E++G +   +DL+G P ++I+G  + S    EI+ R
Sbjct: 512 ERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR 547


>gi|207092740|ref|ZP_03240527.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 204

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 120/204 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG 204
           Y  I   LGL    + A+SG IGG
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGG 204


>gi|242018749|ref|XP_002429836.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212514854|gb|EEB17098.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 379

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 178/359 (49%), Gaps = 35/359 (9%)

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N   A+EM +P L    ++  SG+  ++  ++ +     +++ I  PT EE+++++  S+
Sbjct: 2   NEISALEMLLPLLTDKKIFSASGK--AHLPDLFKFNQNVNESYILNPTCEEIVSELLASY 59

Query: 122 IK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP  FYQI  KFRDE RP++G++RS+EF+MKD Y FD T E S  +Y ++   
Sbjct: 60  TQMSYKNLPCRFYQISSKFRDEKRPKYGLLRSKEFIMKDLYCFDSTFESSMMTYEEVKNK 119

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y   F+ LG+  + ++   G IGG  S EF  +AD G+   V C K          + + 
Sbjct: 120 YKEFFNNLGIPYVVVKGTEGDIGGLKSDEFYFMADVGDNNLVLCQK--------CGHKEC 171

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            + + LN  V           DV   K+F           +GIEVGH F  GTKYS   +
Sbjct: 172 IEFVKLNDQV----CSNCQNGDV---KIF-----------KGIEVGHTFQIGTKYSKIFN 213

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             +   D +   V+M  +G+G  R++AA +E       I WP S+ P+++ LI  K +  
Sbjct: 214 TNYLSKDNEKIPVEMCCFGLGLTRILAASVEVLSSFNEIRWPHSIVPYQVCLIPPKKNSI 273

Query: 360 VCR---DACEKIYARLSKV-GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
             R   D    ++  L +  G D+  DD     IG +      LG P  +I+G   + +
Sbjct: 274 EERQGGDIVNILFNELYRTFGNDLVVDDRTSMTIGKRIQSIKELGLPFAIIIGKDIIKN 332


>gi|46108902|ref|XP_381509.1| hypothetical protein FG01333.1 [Gibberella zeae PH-1]
          Length = 548

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 123/211 (58%), Gaps = 1/211 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           +  H+ ++R G + Q   GI+  LPLG +  D +  +I +  +  GA  +S+ T+ S +L
Sbjct: 1   MVGHEKLIRGGFLRQAHSGIFQLLPLGLRVQDKIEKLIDKHMHSVGASRLSLSTISSEEL 60

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  S R DS   E+ RL DR D  +I  PTHEE +T +    + SY++LP   YQI  K+
Sbjct: 61  WRRSNRLDSVAPELFRLKDRKDTPLILSPTHEEEITTLVAGIVNSYKDLPIRLYQITRKY 120

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++RSREFLMKD Y+FDLT   +  +Y ++  +Y   F  L L  +   A S
Sbjct: 121 RDERRPRHGLLRSREFLMKDLYTFDLTTSEAVETYRQVSGAYRAFFAELKLPYLIAEASS 180

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           G +GGDLSHE+ + +  GE  V  S D  D+
Sbjct: 181 GDMGGDLSHEYHLPSAVGEDSVV-SCDSCDY 210



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 23/179 (12%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATF-------------KG-ADGKDHYVQMGSYGIGAMRVV 325
           + +E GH F  GT+YS+P+ A               +G   G    VQMG +G+G  R+ 
Sbjct: 368 KALECGHTFQLGTRYSVPLDACVDLPRSGLPEAAVEEGLTPGSRVPVQMGCHGVGVSRIF 427

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-----VGCDVF 380
            AV E   D +G+ WP ++APF++++I          D    IY  LSK      G DV 
Sbjct: 428 GAVAEILADERGLNWPRAIAPFEVTIIPSNG----LADEPLDIYDTLSKNNGSQSGFDVV 483

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD     G +   AD++G+P+ VI+G  F  +   E++ R   +++++ ++E+  + S
Sbjct: 484 LDDRKRSFGWKMKDADMVGYPVLVILGKSFKENGTCEVQCRRLSVKDNVKVDELPEFIS 542


>gi|329942565|ref|ZP_08291375.1| prolyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|332287196|ref|YP_004422097.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|313847792|emb|CBY16782.1| prolyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506498|gb|ADZ18136.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328815475|gb|EGF85463.1| prolyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328914444|gb|AEB55277.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 577

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 2/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKEASVLSYELLEKAGYIFKTAKGIYTYTPLFWRVARKMMEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E L   L DR DK     PTHEE+++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTLKDREDKEFCLAPTHEEIVSLFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   ++LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKHLPLHLYQIATKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMNKQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            +Y  IF RL ++ + + A+ G IG   S EF VL+  GE  +  S
Sbjct: 181 QAYQNIFDRLDIQYVIVEADGGKIGKGKSEEFHVLSSLGEDTICVS 226



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G+EV HIF  GT+Y+      F+   GK     MG+YGIG  R +AA IE   D +GI+W
Sbjct: 408 GVEVAHIFNLGTRYTECFEVVFQDEQGKPQSCWMGTYGIGIGRTLAACIEQLADDRGIVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++APF I+++     D  C +A EKIY  L   G     DD  E++G +   +DL+G 
Sbjct: 468 PKAIAPFDITIL-YNGGDATCEEAAEKIYKELQCHGYAPLLDDRNERLGFKLKDSDLIGI 526

Query: 401 PLQVIVGSKFVSDSKVEIKHR 421
           P ++I+G  F++   +EI+ R
Sbjct: 527 PYKLILGKTFLNSGMLEIESR 547


>gi|310793744|gb|EFQ29205.1| prolyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 566

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 124/211 (58%), Gaps = 3/211 (1%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ++R G + Q   GI+  LPLG++  D +  +I       GA  +++ T+ S DLW +SGR
Sbjct: 5   LIRAGFLRQSHSGIFHLLPLGRRVQDKLEHVIDYYMQDLGASRVALSTITSKDLWQKSGR 64

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
                 E+    DR     +  PTHEE +T +    +KSY+ LP   YQI  KFRDELRP
Sbjct: 65  LSQLEPELFSFDDRRGAKYMLSPTHEEEITTLVAKTVKSYKELPLRLYQITRKFRDELRP 124

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           R+G++R+REF MKD Y+FD + E +  +YNK+  +Y  +F+ L L  +  RA SG +GGD
Sbjct: 125 RYGLLRTREFTMKDLYTFDASAEAALETYNKVQSAYAGVFNALKLPVLVARASSGDMGGD 184

Query: 206 LSHEFIVLADTGE-TQVFCSKDFMDFPIPSE 235
           LSHE+ +    GE T V CSK   D+ + +E
Sbjct: 185 LSHEYHLPTTIGEDTVVTCSK--CDYTVNAE 213



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +EVGH F+ GT+YS P+ A           G   K   +QMG +GIG  R++ AV+E  
Sbjct: 392 ALEVGHTFHLGTRYSEPLGAVISVPEDNGRSGTSEKTTLMQMGCHGIGVSRLIGAVVEHL 451

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQ 391
            D KG+ WP  +AP++  +I++   D+      ++I A        D   DD    +  +
Sbjct: 452 ADSKGLQWPRVIAPYEAVVISVTDLDKEAVKVYDEITAYSKDFDAVDAVLDDRSVSLAWK 511

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMSL 431
              ADL+G+P+ +++G  +   + + E++ R  GI+E + L
Sbjct: 512 LKDADLVGYPVLIVLGKVWKKQTGICEVQCRRLGIKETVPL 552


>gi|170592483|ref|XP_001900994.1| probable proline-trna synthetase - fission yeast [Brugia malayi]
 gi|158591061|gb|EDP29674.1| probable proline-trna synthetase - fission yeast, putative [Brugia
           malayi]
          Length = 396

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 197/386 (51%), Gaps = 41/386 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+ S  +   L + ++ +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  
Sbjct: 3   VHRASTMLLGSLDV-KRIIDKLIKVIETELNAIGAYKISMPILGAKEMWQKAGRWSAFES 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVM 150
           EM  L+D+ ++     PTHEE++T +     +  + + P   YQ+  KFRDE     G +
Sbjct: 62  EMFHLSDKTNQIYCLQPTHEEMVTKLVAEQGELRQAVYPLMLYQMGPKFRDETVVGHGFL 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHE 209
           RSREFLM D YSFDLT + +  +Y+ +  +Y RIFH RLG+    +RA++G IGGD+SHE
Sbjct: 122 RSREFLMNDLYSFDLTEQNASDTYSLVSKTYQRIFHDRLGINFYIVRADAGNIGGDMSHE 181

Query: 210 FIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + +   TG   + +CSK  +       N D         ++++   P   +      K +
Sbjct: 182 YHLPCKTGRDSIAYCSKCNLGM-----NHD---------LLKRGEKPCCCS------KEY 221

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            S+ E        IE+ H F  G  ++        GA   +  + M  +GIG  R++AA+
Sbjct: 222 ISIVET-------IEIAHTFQLGDLFTKKF-----GAKHDNQPLIMNCFGIGIGRLIAAI 269

Query: 329 IES-SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC---DVFWDD- 383
           I+S S   K +  P ++ PFK+++I          +  E I   LS++     D+F DD 
Sbjct: 270 IDSMSPSTKALRLPYALVPFKVAVILPNKTQSETMEFAENIIGHLSQISSVQNDIFVDDR 329

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSK 409
           +   IG +   A  LG P   +VG++
Sbjct: 330 LDNSIGRRLLTAANLGIPHIFVVGNR 355


>gi|254569756|ref|XP_002491988.1| Protein with similarity to tRNA synthetases [Pichia pastoris GS115]
 gi|238031785|emb|CAY69708.1| Protein with similarity to tRNA synthetases [Pichia pastoris GS115]
 gi|328351517|emb|CCA37916.1| prolyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 564

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 125/204 (61%), Gaps = 2/204 (0%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           ++ +H ++L++  I+Q + GI  WLPLG +    +  +IR+  ++ G +EM + +L S  
Sbjct: 28  DLTTHDMLLQSRFIYQPAAGIVHWLPLGLRTYKKLQNVIRKRMDQAGGLEMELSSLSSKH 87

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  + R+D+   E+ +  D  D+     PT EE +T++      SY++LP   YQI  K
Sbjct: 88  LWERTKRWDN--NELFKFKDSKDRDYCLVPTCEEEITNLVGDLCSSYKDLPLLVYQISRK 145

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDELRPR G++R REFLMKDAYSFDLT E    SY+ +  +Y RIF  L L      A+
Sbjct: 146 YRDELRPRGGLLRGREFLMKDAYSFDLTKEDGLKSYDNVNEAYRRIFQDLKLPVTVANAD 205

Query: 199 SGPIGGDLSHEFIVLADTGETQVF 222
           SG IGGDLS E+ ++ ++GE  +F
Sbjct: 206 SGSIGGDLSLEYHLIHESGEDILF 229



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 3/130 (2%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            IEVGH FY   KYS P+  T      +   V MG YGIG  R++AA+ ++S D  G+ W
Sbjct: 377 AIEVGHTFYLDKKYSSPLDCTVVNEQNEQTTVYMGCYGIGVSRLIAAIAQTSRDEVGLTW 436

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP++I+L++ K   +   D   +I   LS     V   D    +G +   + + G 
Sbjct: 437 PQIIAPYQITLLSNKTSSKKNLDTVTEI---LSSFDVQVDNRDGKFSMGHKLKQSKVAGI 493

Query: 401 PLQVIVGSKF 410
           PLQ+IVG  F
Sbjct: 494 PLQIIVGKHF 503


>gi|330444263|ref|YP_004377249.1| prolyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807373|gb|AEB41546.1| prolyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 577

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+   +DA + S++L+ + G + +  KGIY++ PL  + +     IIREE
Sbjct: 1   MRTSQLFYRTLKHTKKDA-VLSNELLEKAGYLWRIGKGIYTYTPLLWRVVLKFMEIIREE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+ W+++GR+ ++  E L   L DR  K     PTHEE+++ + 
Sbjct: 60  LNAIGGQELLLPILHPAEYWLQTGRWHAFVSENLLYHLIDREGKEHCLAPTHEEIVSALL 119

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQ+  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 120 AQWLSGKKQLPLHLYQMAPKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMDEQYQKLR 179

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++Y +IF RLGL    + A+ G IG   S EF VL   GE  +  S D+
Sbjct: 180 MAYSKIFDRLGLAYAIVNADGGKIGKGKSEEFQVLCSLGEDTICVSGDY 228



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 5/183 (2%)

Query: 269 DSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           D  P N  V  +   GIEV HIF  G +Y+    ATF+  +GK+    MG+YGIG  R +
Sbjct: 392 DLCPVNPDVPYKIFQGIEVAHIFNLGIRYTESFQATFQDEEGKERPCWMGTYGIGIGRTL 451

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA +E   D +GI+WP+ +APF IS++     D         +Y  L + GC+   DD  
Sbjct: 452 AACVEQLSDSRGIVWPEIIAPFSISIL-YNGGDTPSEQVAYSLYQDLQQQGCEPLLDDRD 510

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E++G +   +DL+G P ++I+G  + +   +EI+ R +G +  +  E  I+++       
Sbjct: 511 ERLGFKLKDSDLIGIPYKLIIGKAYHASGILEIESR-SGEKFSVPPENFISWSHEHLPRF 569

Query: 446 RPV 448
           R +
Sbjct: 570 RRI 572


>gi|256075323|ref|XP_002573969.1| prolyl-tRNA synthetase [Schistosoma mansoni]
 gi|238659161|emb|CAZ30202.1| prolyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 472

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 205/445 (46%), Gaps = 45/445 (10%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S KL+   G+I   S G+Y++ P   ++L  + +++     + GA  + +PTL    +W
Sbjct: 26  VSQKLLRLYGLIFSDSTGVYAFGPEVLRSLRKLESLVDNSMLQLGAQRVLLPTLGPRHIW 85

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            +SGR+ +    + R+ DR        PTHEE +T+       SY++LP   YQI  KFR
Sbjct: 86  EKSGRWSTMQSSLFRVKDRLSHEYCLQPTHEEYITNFVACLNLSYKSLPVLVYQITSKFR 145

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE  P+ G++R REFLM+D Y+FD + E ++ +Y ++  +Y  +   L L  +   A+ G
Sbjct: 146 DEPHPKHGLVRGREFLMQDIYTFDASVETAEKTYKRVKTAYSDLMVNLELPYLVACADPG 205

Query: 201 PIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            +GG +S EF V AD GE ++  CSK  + F     N++ + I        Q   P    
Sbjct: 206 NVGGLISEEFHVEADIGEDRILTCSKCSLKF-----NSELEGIYHYEGNYLQVKLPAP-- 258

Query: 260 SDVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                     S+P N  +  +   +V H F  G +YS    AT++   G    + MG YG
Sbjct: 259 ----------SVPYNLAQKYSMKFKVAHCFLLGERYSKCFDATYRSPSG-SKLMFMGCYG 307

Query: 319 IGAMRVVAAVIE----------SSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACE 366
           +G  R++A  IE          S      + WP  +AP+  +++  K  A D V  D  +
Sbjct: 308 LGISRLLAVCIEHLTRVAFPDKSKDQITQLRWPVRIAPYSGAIVLQKEMAKDSVNPDELK 367

Query: 367 KIYARLS------KVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            I   +       K+  D+  DD MG  +G +      LG P  + V S+   D   E  
Sbjct: 368 YILDTIQSDSINFKLPGDILVDDRMGLSLGRKILDQSRLGIPWILTVKSQ--RDGTYE-- 423

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
             L  + +D S    +  A   F+N
Sbjct: 424 --LIDVYKDRSCVATLEQARSAFNN 446


>gi|302925353|ref|XP_003054078.1| hypothetical protein NECHADRAFT_89892 [Nectria haematococca mpVI
           77-13-4]
 gi|256735019|gb|EEU48365.1| hypothetical protein NECHADRAFT_89892 [Nectria haematococca mpVI
           77-13-4]
          Length = 548

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 121/206 (58%), Gaps = 1/206 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           +  H  ++R G + Q   GI+  LP+G +  D +  ++ +  +  GA  +S+ T+ S +L
Sbjct: 1   MVGHGKLIRGGFLRQAHSGIFQLLPMGLRVQDKIEKLLDKHMHSVGASRLSLSTISSEEL 60

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  S R D    E+ RLADR +  +I  PTHEE +T +    +KSY++LP   YQI  K+
Sbjct: 61  WRRSDRLDRVAPELFRLADRKEVPLILSPTHEEEITTLVAGTLKSYKDLPIRLYQITRKY 120

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++RSREFLMKD Y+FDLT   +  +Y  +  +Y   F  L L  +   A S
Sbjct: 121 RDERRPRHGLLRSREFLMKDLYTFDLTTAAAIETYRLVSAAYRAFFSELKLPYLVAEASS 180

Query: 200 GPIGGDLSHEFIVLADTGE-TQVFCS 224
           G +GGDLSHE+ + +  GE T V C+
Sbjct: 181 GDMGGDLSHEYHLPSAVGEDTVVNCN 206



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 15/175 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATF--------KGAD------GKDHYVQMGSYGIGAMRVV 325
           R +E GH F+ GT+YS+P+ A          K A       G    VQMG +G+G  R+ 
Sbjct: 368 RALECGHTFHLGTRYSVPLDACVFLPQSELPKVAKEEGLKPGSRVPVQMGCHGVGVSRIF 427

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-RLSKVGCDVFWDDM 384
            AV E   D +G+ WP ++APF++++I     D+   +  + + A   S+ G DV  DD 
Sbjct: 428 GAVAEILADERGLNWPRAIAPFEVAVIPTPGLDKESIEIYDNLVAGSSSQPGLDVVLDDR 487

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +  G +   AD++G+P+ VI+G  F      E++ R   ++E++ LEE+  + S
Sbjct: 488 KQSFGWKMNDADIVGYPVVVILGKAFKQGRLCEVQCRQLSVKENVKLEELPRFIS 542


>gi|62184882|ref|YP_219667.1| prolyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81312944|sp|Q5L6M5|SYP_CHLAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|62147949|emb|CAH63696.1| prolyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 577

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKEASVLSYELLEKAGYIFKTAKGIYTYTPLFWRVALKMMDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E L   + DR DK     PTHEE+++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTVKDREDKEFCLAPTHEEIVSMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMNEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            +Y  IF RL ++ + + A+ G IG   S EF VL+  GE  +  S
Sbjct: 181 QAYQNIFDRLEIQYVIVEADGGKIGKGKSEEFHVLSSLGEDTLCVS 226



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G+EV HIF  GT+Y+      F+   GK     MG+YGIG  R +AA IE   D +GI+W
Sbjct: 408 GVEVAHIFNLGTRYTEGFDVVFQDEQGKPQSCWMGTYGIGIGRTLAACIEQLADDRGIVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++APF IS++     D  C +A EKIY  L   G     DD  E++G +   +DL+G 
Sbjct: 468 PKAIAPFDISIL-YNGGDTACEEAAEKIYKELQGYGYAPLLDDRNERLGFKLKDSDLIGI 526

Query: 401 PLQVIVGSKFVSDSKVEIKHR 421
           P ++I+G  F++   +EI+ R
Sbjct: 527 PYKLILGKTFLNSGMLEIESR 547


>gi|170070377|ref|XP_001869557.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167866293|gb|EDS29676.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 489

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 137/228 (60%), Gaps = 8/228 (3%)

Query: 2   RRSKYFLP--ILQENP----RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDN-VN 54
           R +K F P  I+ +N     +D    S +LML  G+I Q   G +  +PL Q++L   V+
Sbjct: 3   RLTKIFQPTLIVPKNAVVKNQDVTSKSQRLMLEQGLIRQAGNGTFYLMPLLQRSLQKAVD 62

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +    Q    A ++++P L +A LW +SGR +S G E++R  DR+ K  I GPTHEE +
Sbjct: 63  LVDHFMQRHASAQKLTLPILTAASLWRQSGRLESAGPELMRTTDRHGKQQILGPTHEESI 122

Query: 115 TDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  S    SYR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+    ++ +
Sbjct: 123 TALVASISPVSYRAFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVGRGEARET 182

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y ++  +Y ++F  +G+  + +R ++G IGG  SHE+   ++ GE Q+
Sbjct: 183 YEEVNEAYRKLFDAVGVGYVKVRGDTGTIGGSESHEYHFPSEVGEDQL 230


>gi|325188965|emb|CCA23493.1| prolyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 620

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ ++P L+  P +A + S++L+LR G I +   G ++ LPL  + L  +  II  E  
Sbjct: 18  RSRVWIPTLKAAPIEAAVPSYQLLLRAGFIRKSGHGTFAMLPLATRVLQKLEDIIDTEME 77

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    +  +P + S+DLW  S R+ S   E+    DR +   I  PTHEE MT +   H 
Sbjct: 78  KINGNKCDLPAIVSSDLWKLSDRWRSRTSELFTFRDRRNNEQILAPTHEEPMTALVAQHH 137

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            S        YQI  K+RDE+RPRFG++R+REF+MKD YSFD     +  +Y+ +  SY 
Sbjct: 138 NSTHE-SLRLYQIGKKYRDEVRPRFGLLRAREFIMKDMYSFDTNYSNAVTTYDAVIGSYK 196

Query: 183 RIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
           RI  + L L  + ++A++G IGG+ SHEF VLA  GE  +  CS
Sbjct: 197 RILQQILRLPVVQVQADTGDIGGNFSHEFHVLASVGEDGILSCS 240



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 103/186 (55%), Gaps = 24/186 (12%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATF----KGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           ++RGIEV H FY G +YS  M+A      +G+  K+ Y +MG +G+G  R++AA++E+SH
Sbjct: 438 ASRGIEVAHAFYLGQRYSNSMNALHSRISEGSVVKEPY-EMGCFGLGVSRLLAAIVETSH 496

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRD-----ACEKIYARLSKV----------GCD 378
           D  GI WP  +AP+ I ++ I A    C D        KI A+LS++             
Sbjct: 497 DKNGIQWPGVIAPYHIIVLAIGA---TCVDHPLAIGANKIAAQLSQMPFVASSTLSGSVH 553

Query: 379 VFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  +   G +   ++L+G+P +V++G ++ +   VE+++RLT  +  +  EE+  Y
Sbjct: 554 VILDDRWQTSAGVKLVESELIGYPYRVVIGKQYATARLVEVQNRLTMEKTFIKPEELPAY 613

Query: 438 ASHRFS 443
              +F+
Sbjct: 614 FEDQFA 619


>gi|330930995|ref|XP_003303228.1| hypothetical protein PTT_15359 [Pyrenophora teres f. teres 0-1]
 gi|330938329|ref|XP_003305730.1| hypothetical protein PTT_18645 [Pyrenophora teres f. teres 0-1]
 gi|311317156|gb|EFQ86197.1| hypothetical protein PTT_18645 [Pyrenophora teres f. teres 0-1]
 gi|311320895|gb|EFQ88675.1| hypothetical protein PTT_15359 [Pyrenophora teres f. teres 0-1]
          Length = 529

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/241 (36%), Positives = 139/241 (57%), Gaps = 15/241 (6%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           SH L++R G + Q   G++  LPLG +  + +  +I +  N  GA ++S+ ++ +  LW 
Sbjct: 23  SHSLLVRGGFLRQAHSGVFHLLPLGLRVQNKLEGLIDKHMNSIGASKVSLSSITTEALWQ 82

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +SGRY S   E+LR+ DR +   +  PTHEE +T +  S + SY++LP   YQI  K+RD
Sbjct: 83  QSGRY-SANSELLRIKDRRESGFLLSPTHEEEITALVASMVHSYKDLPLRLYQIGRKYRD 141

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E RPR G++R++EF+MKD Y+FD +P+ +  +Y  +  +Y  +F+ L L  +   A+SG 
Sbjct: 142 ERRPRGGLLRAKEFVMKDLYTFDSSPKAALETYESVRQAYNNLFNELKLPYLVADADSGN 201

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA-TS 260
           +GG LSHE+   +  GE  VF  +               D ++   +VE+ T P A+ TS
Sbjct: 202 MGGKLSHEYHFASPKGEDYVFSCQSC-------------DYVANEELVEKKTDPAASKTS 248

Query: 261 D 261
           D
Sbjct: 249 D 249



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 7/187 (3%)

Query: 254 APYAATSDVHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-D 309
           AP   + D+   K  D  P     K    + IEVGH F+ GT+YS+P++A     D    
Sbjct: 333 APSTCSVDITLTKPGDPCPRCSTGKLNIQKAIEVGHTFHLGTRYSVPLNAVIALPDQNLS 392

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-ISLINIKAHDQVCRDACEKI 368
               MG +GIG  R++ AV     D +G+ WP  +AP++ I L + K  ++   +  + +
Sbjct: 393 SPTHMGCHGIGVSRIIGAVASLLSDARGLNWPRVIAPYEAIVLSDPKTEEKDTTEVYDAL 452

Query: 369 YARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +        D+  DD  G+ +G +   ADL+G+P+ V++G  +  D +VEI+ R  G+++
Sbjct: 453 HGEGRNSDIDLVLDDRAGKSLGWKLKDADLIGYPVVVVMGRSW-KDKRVEIQCRRLGVKK 511

Query: 428 DMSLEEV 434
           D+ L E+
Sbjct: 512 DVELNEL 518


>gi|315185841|gb|EFU19606.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 589

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 146/276 (52%), Gaps = 16/276 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+  PR+ E   + L+++ G +    +G+YS+LPLG +    +  +I  E
Sbjct: 25  MRYSQLFPHTLRTLPREHEGTPYGLLVKGGYVRGLGQGLYSFLPLGLRVFYKLKRLIAGE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ VP +   +LW  SGR    G ++++ +DR  + M+  PTHEE M ++ R 
Sbjct: 85  MKRLGGQEVLVPLVNPMELWERSGRDLLVGGDLVKFSDRAGRQMVISPTHEEAMVELLRQ 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ Q K+RDE R R G++RSREF+MKD YSF  T     + + K+F +
Sbjct: 145 SMRSYRMLPVFLYQFQTKYRDEERVRIGLLRSREFIMKDGYSFHRTYADLNNFFPKVFHA 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF--------CSKDF----- 227
           Y R+F    +  I   A  G +GG+ S+EF+V ++ G+  V          ++D      
Sbjct: 205 YERVFRTCNVPYIVAEAGVGYMGGERSYEFLVPSERGDNVVIRCPSCGYTANQDIAIGIK 264

Query: 228 ---MDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 P+P E  +    +S++ +V   + P +  +
Sbjct: 265 PLRTQIPLPMEEVETPGCVSMDDLVVHLSVPKSGLA 300



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 4/169 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R +E+GHIF  G  YS  M  +F    G++ +  MGSYGIG  R+++ ++E++ D  GI+
Sbjct: 425 RAVEIGHIFKLGDFYSQRMGLSFFDERGREIHPYMGSYGIGMGRLISMIVETNSDEHGIV 484

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAPF + L++I     + R    K+ A    +G     DD     G +F  ADLLG
Sbjct: 485 WPPQVAPFMVFLMSIGNSLSMKR----KLEALAEALGDRALLDDRHLSPGRKFLDADLLG 540

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            P ++++  + + + KVE+K R TG    ++ + V ++  +      PV
Sbjct: 541 IPYRILLTQELLEEGKVEVKERTTGKVWKLAYQRVEDFVHYLEEQYGPV 589


>gi|302340220|ref|YP_003805426.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301637405|gb|ADK82832.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 562

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 128/222 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    F   L+  P+D +      +LR G I     G+YS+LPLG K ++ +  IIREE
Sbjct: 1   MRYRHLFGKTLRSTPQDVKSEGLSFLLRGGFIRPLGHGLYSYLPLGVKVVEKLRKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+SVP +  AD+W  SGR     + M+R +DR+ +  +  P+HEE   ++ R 
Sbjct: 61  MDRLGGQEVSVPLVNPADIWKRSGREHLIDRAMIRFSDRSGRRYVLSPSHEEAFVELARY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+ P   +Q Q KFRDE R R G++R +EF MKDAYSF  +     + + KMF +
Sbjct: 121 GLRSYRDFPVLLFQFQRKFRDEERVRQGLVRLKEFEMKDAYSFHRSATALNNFFPKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y RIF R GL  +   +  G + G+ ++EF++ ++ G+  V 
Sbjct: 181 YERIFSRCGLDILTAESGVGYMRGEKAYEFLLPSNLGDDVVM 222



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + R IE+G+IF  G  Y+  M   F+  +GK  Y  MGSYGIG  R++ A+ E+  D +G
Sbjct: 399 AVRAIELGNIFKLGDFYARGMELVFREENGKRLYPHMGSYGIGIDRLLGAIAETKRDERG 458

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++WP S+AP++  L+ I     V R+  E++YA +S+   D   DD  E  G +F  ++L
Sbjct: 459 LLWPPSLAPYRFFLMGIGKGASVRRE-VEQLYASISE---DTLIDDRSESPGVKFKDSEL 514

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G P ++++ +  + + + E+  R    R  + L ++
Sbjct: 515 MGIPWRIVISASTLEEGRAELYDRRADRRRLVPLADI 551


>gi|307717987|ref|YP_003873519.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306531712|gb|ADN01246.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 577

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 147/285 (51%), Gaps = 19/285 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+  PR+ E   + L+++ G +    +G+YS+LPLG +    +  +I  E
Sbjct: 13  MRYSQLFPHTLRTLPREHEGTPYGLLVKGGYVRGLGQGLYSFLPLGLRVFYKLKRLIAGE 72

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P +   +LW  SGR    G ++++ +DR  + M+  PTHEE M ++ R 
Sbjct: 73  MKRLGGQEVLAPLVNPMELWERSGRDLLVGGDLVKFSDRAGRQMVISPTHEEAMVELLRQ 132

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ Q K+RDE R R G++RSREF+MKD YSF  T     + + K+F +
Sbjct: 133 SMRSYRMLPVFLYQFQTKYRDEERVRIGLLRSREFIMKDGYSFHRTYADLNNFFPKVFHA 192

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF--------CSKDF----- 227
           Y R+F    +  I   A  G +GG+ S+EF+V ++ G+  V          ++D      
Sbjct: 193 YERVFRTCNVPYIVAEAGVGYMGGERSYEFLVPSERGDNVVIRCPSCGYTANQDIAIGIK 252

Query: 228 ---MDFPIPSENTDFDDIISLNSIVEQWTAP---YAATSDVHNEK 266
                 P+P E  +    +S++ +V   + P    A T   H  K
Sbjct: 253 PLRTQIPLPMEEVETPGCVSMDDLVTHLSVPKSGLAKTMAYHTGK 297



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 4/169 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R +E+GHIF  G  YS  M  +F    G++ +  MGSYGIG  R+++ ++E++ D  GI+
Sbjct: 413 RAVEIGHIFKLGDFYSQRMGLSFVDERGREIHPYMGSYGIGMGRLISMIVETNSDEHGIV 472

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAPF + L++I     + R    K+ A    +G     DD     G +F  ADLLG
Sbjct: 473 WPPQVAPFMVFLMSIGNSLSMKR----KVEALAEALGDRALLDDRHLSPGRKFLDADLLG 528

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            P ++++  + + + KVE+K R TG    ++ + V ++  +      PV
Sbjct: 529 IPYRILLTQELLEEGKVEVKERSTGKVWKLAYQRVEDFVHYLEEQYGPV 577


>gi|315641198|ref|ZP_07896275.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315482965|gb|EFU73484.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 556

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 128/224 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P +A++ SH+L++R G I Q + G+Y++LPL Q+ +  + AII++E
Sbjct: 1   MKQSHLLVPTLRETPSEADVRSHQLLVRAGYIRQIATGVYAYLPLAQRVMKKITAIIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM +P +   D W +          +  ++DRN +  +  P+ E+   ++ R+
Sbjct: 61  LDAIGANEMQMPNILPMDYWQDDACRRLCTSSLFEVSDRNQRQYMLAPSQEKAFIELVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+Q+K+RDE +P+FG + SREFLM D YSF       + +Y ++  S
Sbjct: 121 EVQSYRKLPLKLYQVQMKYRDEKKPKFGFLYSREFLMTDFYSFHAGAVSLEQTYQQVESS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
              I  R GL    +   +  +G +   EF+ LA  G+ Q+  S
Sbjct: 181 IKTILARCGLTYHLVLGHTNRVGIEKVKEFMALASFGDEQLCLS 224



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +G+++GH+     +YS  +SA F    G+    ++    IG  R+++ ++E   D   I 
Sbjct: 391 KGLKIGHMMTMSKEYSQALSAQFIDETGQAVPTRICYCSIGVSRLLSLIVEQHCDENKIQ 450

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP++VAPF   ++ I   D   +   ++I  ++ +   +V  DD  E+ G +FA ADL+G
Sbjct: 451 WPNTVAPFDAHVVPIDYQDSDQQQLTDEIVEQMEQAEYEVLLDDRVERAGVKFADADLIG 510

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P+++ +G K   +  VEIK   +G   ++  EE++
Sbjct: 511 CPIRITIGKK-AKEGIVEIKLHQSGDSLEIRKEELV 545


>gi|329569947|gb|EGG51702.1| proline--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 516

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 105/170 (61%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           +REE  +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T+
Sbjct: 1   MREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTE 60

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + R  I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY  
Sbjct: 61  LIRDEINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRD 120

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
              +Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S +
Sbjct: 121 YEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTE 170



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 269 DSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+   V A  +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++
Sbjct: 335 DPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLS 394

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E
Sbjct: 395 AIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNE 454

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+
Sbjct: 455 RAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEEL 501


>gi|254578182|ref|XP_002495077.1| ZYRO0B02794p [Zygosaccharomyces rouxii]
 gi|238937967|emb|CAR26144.1| ZYRO0B02794p [Zygosaccharomyces rouxii]
          Length = 564

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 3/229 (1%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSAD 78
           + +H+L    G I Q   G+  WLP+G + L+ V +I+R   N+ G A+E+S+  L    
Sbjct: 28  LPTHELFQTLGFIRQSQSGLVHWLPMGLRTLNKVESIVRHRMNQDGDALEVSLSALSPRS 87

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW ++ R+   G E+ +L D    +    PT EE +T++   +I SYR++P T YQI  K
Sbjct: 88  LWEKTNRWS--GTELFKLKDAKKASYCLTPTCEEDITNLMNEYITSYRDMPTTVYQITRK 145

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDELRPR G++R REFLMKDAYSF    E +  ++ KM   Y +IF  L +  +   A+
Sbjct: 146 YRDELRPRGGLLRGREFLMKDAYSFASNEEEALQTFQKMNAVYNKIFQDLKIPFVSAWAD 205

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +G IGGDLS E+  L + GE  +       D     +   F D + L+S
Sbjct: 206 TGDIGGDLSKEYHYLHEGGEDTLLTCDQCGDVSNVEKCESFPDEVGLHS 254



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 12/143 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGI 338
           + IEVGH F+ GTKYS  M + F  ++   + + QMG YGIG  R+V A+ E + D KG 
Sbjct: 378 KSIEVGHTFHLGTKYSEAMGSKFTDSNNNSNSIPQMGCYGIGISRLVGAIAEVARDSKGF 437

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYAR--LSKVGCDVFWDDMGEQIGSQFAVAD 396
            WP SV+P+ +S+     ++Q+ ++  + I +   LS+     F   +G  +G++  ++ 
Sbjct: 438 KWPTSVSPYLMSICG--KNEQLVQETRQTIESPDVLSQ-----FNSKLG--LGARIKLSH 488

Query: 397 LLGFPLQVIVGSKFVSDSKVEIK 419
            LG PL +IVG K     +VE++
Sbjct: 489 ALGIPLAIIVGPKSWPKVEVEVR 511


>gi|50309671|ref|XP_454847.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643982|emb|CAG99934.1| KLLA0E19801p [Kluyveromyces lactis]
          Length = 549

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 127/204 (62%), Gaps = 2/204 (0%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           ++ +H+L+ + G + Q S G+  WLPLG K L N+  IIR   + +GA E+S+ +L    
Sbjct: 19  QLPTHELLQQLGYVKQASSGVLHWLPLGLKTLRNIEGIIRRRMDESGAHEVSLSSLSQRS 78

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  +GR+ +   E+ +L D   K     PT EE +T +  S++ SY++LP   YQI  K
Sbjct: 79  LWETTGRWSN--TELFKLKDAKKKDYCLVPTCEEEITWLMNSYLTSYKDLPIIAYQITRK 136

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDELRPR G++R REFLMKDAYSF L  E +  ++ ++  +Y +IF  +G+  +   A+
Sbjct: 137 YRDELRPRGGLLRGREFLMKDAYSFHLNSEDAVSTFERVNATYDKIFTDIGVPFVSAVAD 196

Query: 199 SGPIGGDLSHEFIVLADTGETQVF 222
           SG IGGDLS E+  + ++GE  +F
Sbjct: 197 SGDIGGDLSKEYHFIHESGEDTLF 220



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 6/174 (3%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           DV   ++     E +  SA+ IEVGH FY G KYS  ++ATF+  D  D  ++MG YGIG
Sbjct: 349 DVEEGEICAQCEEGELESAKSIEVGHTFYLGKKYSKALNATFRQQDNSDVVMEMGCYGIG 408

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++ A+ + + D KG+ WP SV+P+K+S+    A D+   D   K+ A L       F
Sbjct: 409 VSRLIGAIAQVTRDPKGLRWPSSVSPYKVSVC---ASDKSV-DQLNKVKALLDYKPYTDF 464

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             D    IG++   +  LG P+ ++VG K   + ++E++        + S E++
Sbjct: 465 --DAKTSIGAKIQQSHALGIPIAIVVGPKSWPNVEIEVRGNFRSKNWETSYEKL 516


>gi|33636681|gb|AAQ23638.1| AT04665p [Drosophila melanogaster]
          Length = 335

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 164/336 (48%), Gaps = 41/336 (12%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +Y  +  +Y R
Sbjct: 9   SYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMETYTVVNAAYDR 68

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDI 242
           +F +L +  + + A +G +GG +SHE+  ++  GE  +  CS     F   SE       
Sbjct: 69  LFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSS--CGFAGNSE------- 119

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +    + P   +SD+                 RG+EV H F  G KYS P+ ATF
Sbjct: 120 ----VVKAPASCPSCNSSDLKE--------------VRGVEVAHTFLLGDKYSKPLGATF 161

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI  K   +   
Sbjct: 162 LNTTGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIGPKQGSKEQP 221

Query: 363 DACEKIYARLSKVG--C---DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV--SDS 414
           +A       L  VG  C   ++  DD  E  IG +   A  LG PL ++VG+K V     
Sbjct: 222 EAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVGAKSVRLDSP 281

Query: 415 KVEIKHRLTGIREDMSLEE----VINYASHRFSNNR 446
           K+E+ H   G   ++   E    V  ++ H+ S  R
Sbjct: 282 KLEV-HTSKGETYELDFSETLKLVAEHSQHKKSLER 316


>gi|156841840|ref|XP_001644291.1| hypothetical protein Kpol_1030p43 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114930|gb|EDO16433.1| hypothetical protein Kpol_1030p43 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 580

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 133/234 (56%), Gaps = 9/234 (3%)

Query: 1   MRRSKYFLPILQE--NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R    FLP +++  N     + +  LM   G+IH    G  +WLPLG ++L  +  +I 
Sbjct: 12  LRSLHSFLPKIKKSGNGNIESLQTADLMKHAGLIHGSRSGFINWLPLGLRSLRKLELLIH 71

Query: 59  EE-QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
            + QN  GA E+ + T+   DLW +S R+++  KE+ +L D  D       T EE +T++
Sbjct: 72  NKMQNEAGAYEVKLSTISPKDLWEKSNRWNN--KELFKLKDSKDAQYCLTATCEEDITNL 129

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
             ++I SY+N+P T YQI  KFRDE RPR G++R+REFLMKDAYSF  +   +  ++N M
Sbjct: 130 MMNYITSYKNMPITVYQIGNKFRDEKRPRGGLLRAREFLMKDAYSFARSKAQAIEAFNNM 189

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF----CSKDF 227
              Y  +F  L +      A+SG IGGDLS E+  +  +GE  +F    C++ F
Sbjct: 190 NKVYDSLFTELKIPFKSAWADSGDIGGDLSKEYHYIHHSGEDTLFTCDHCNETF 243



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 107/214 (50%), Gaps = 27/214 (12%)

Query: 226 DFMDFPIPS-ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           +F DFP+      +F  I  ++ I            D  + +L  S  E +  S + IEV
Sbjct: 340 NFPDFPLKKYAKNNFTSITDVSII------------DAIDGELCGSCEEGQLKSDKSIEV 387

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH F+ GTKY+    AT+   + K   ++MG YGIG  R++ A+ E + D KG  WP  +
Sbjct: 388 GHTFHLGTKYTESFGATYFDENSKPSLIEMGCYGIGVSRLIGAIAEITRDSKGFRWPSVI 447

Query: 345 APFKISL---INI--KAHDQVCRDACEKIYARLSKVGCDVFW---DDMGEQIGSQFAVAD 396
           +P+ +S+   +N+  K  +Q   D  + I  +   +  ++F    D  G  IG Q  ++ 
Sbjct: 448 SPYIVSICSQVNVSHKELNQERIDQVKDILYQSPILKNEIFSSFPDKTG--IGKQIELSQ 505

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+G P  VI+GSK   + ++E++    GIR D S
Sbjct: 506 LIGIPFNVIIGSKSWPNVEIEVR----GIRWDNS 535


>gi|71024203|ref|XP_762331.1| hypothetical protein UM06184.1 [Ustilago maydis 521]
 gi|46101855|gb|EAK87088.1| hypothetical protein UM06184.1 [Ustilago maydis 521]
          Length = 735

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 125/213 (58%), Gaps = 4/213 (1%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  + S +L++R G +   S GI++ LP   + +  +  II E+     A  +++P L  
Sbjct: 72  DDPLPSLQLLVRGGYVRSSSSGIFTLLPNALRIVGKITNIIDEQLCAIHASRIAMPNLLP 131

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           + LW ++GRY   G E+ +L DR +   + GPTHEE +T +  + + S R LP   YQI 
Sbjct: 132 SKLWHQTGRYTVMGSELYKLRDRKNSEFVLGPTHEEEITKLVANQVDSDRQLPLRLYQIT 191

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-GL--KSI 193
            KFRDE RPR G++R++EFLMKD YSFD +   +  +Y ++  +Y RIF R+ G+  +  
Sbjct: 192 TKFRDEPRPRMGLLRTKEFLMKDLYSFDKSAADANTTYEEVRAAYARIFDRIFGVDGRWT 251

Query: 194 PMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
              A++G IGG+ SHE+ V    GE T + CS+
Sbjct: 252 AAEADTGAIGGNKSHEYHVKDPAGEDTLISCSR 284



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 96/245 (39%), Gaps = 79/245 (32%)

Query: 254 APYAATSDVHNEKLFDSLPENKRV----SARGIEVGHIFYFGTKYSLPMSATF------- 302
           AP     D+   +  D+ P  K       ++ IEVGH FY G +YS  + A F       
Sbjct: 473 APPLTLVDIRTAQASDTCPSCKSPHSLQESKAIEVGHTFYLGERYSRTLEAGFLPSHDVA 532

Query: 303 -------KGADGKDHYVQMGSYGIGAMRVV---------------------AAVIESSHD 334
                  K A+G+  + QMG YGIG  R++                     +AV      
Sbjct: 533 EQVSQVHKLANGRVPF-QMGCYGIGVSRILGALAQKAVGDFDRIFHGDAGDSAVASKKRQ 591

Query: 335 GKGIIWPDSVAPFKISLI------------------NIKAH----DQVCRDACEKIYARL 372
             G +WP  +APF   ++                   I +H    D+  R   E+I ++ 
Sbjct: 592 KAGFVWPSLIAPFTAVIVISDVKDPAKVEAAQIVWDRIVSHARRSDRTIRAVLERISSQR 651

Query: 373 SK-------VGCDVFW----------DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           S+       V  D  W          DD    +GS+ A +DL G+  ++IVG  F + +K
Sbjct: 652 SQPDQATPQVDQDQGWSREEASEIVIDDRTSTLGSKLADSDLTGYAYRIIVGKHFTAQAK 711

Query: 416 VEIKH 420
           +E+++
Sbjct: 712 LELQY 716


>gi|312212761|emb|CBX92844.1| similar to prolyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 610

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 2   RRSKYFLPILQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           R SK++ P    +P+D E   SH L++R G + Q   G++  LPLG +    + A+I + 
Sbjct: 42  RLSKFWAPTGGISPQDGEQDDSHALLVRGGFLRQAHSGVFHLLPLGLRVQSKLEALIDKH 101

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A ++S+  + +  LW +SGRY S   E+LR+ DR +   +  PTHEE +T +  S
Sbjct: 102 MSSISASKVSLSFITTEALWRQSGRY-SANSELLRINDRKESGFLLSPTHEEEITALVAS 160

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  K+RDE RPR G++R++EF+MKD Y+FD     +  +Y ++  +
Sbjct: 161 TVHSYKDLPLRLYQIGRKYRDERRPRQGLLRAKEFMMKDLYTFDTDANAALKTYEQVRQA 220

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y  +F  L +  +   A+SG +GG LSHE+  ++  GE  V+
Sbjct: 221 YNNLFDELRIPYLVADADSGNMGGKLSHEYHFISPKGEDNVW 262



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 29/184 (15%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R IE+ H F+ GT+YS P+SA F   DG     + MG +GIG  R+V AV     D +G+
Sbjct: 416 RAIEIAHTFHLGTRYSDPLSAVFAPRDGTAKLAMHMGCHGIGLSRIVGAVAGLLCDERGL 475

Query: 339 IWPDSVAPFKISLINI---------KAHDQVC---RDACEK---------------IYAR 371
            WP  +APF+  ++           + +D +    RD                       
Sbjct: 476 NWPRVMAPFECVVLGGGGEEGEVAGRVYDGLVFGGRDGAAPGGVDNADATAPAAAAAVDA 535

Query: 372 LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            +    D   DD  G+ +G +   ADL+G+P+ V+VG  +    +VE++ R  G++ D+S
Sbjct: 536 DTVQPIDTILDDRPGKSLGWKLRDADLIGYPVVVVVGRAWRERGEVEVQCRRLGVKRDVS 595

Query: 431 LEEV 434
           + EV
Sbjct: 596 VSEV 599


>gi|260949659|ref|XP_002619126.1| hypothetical protein CLUG_00285 [Clavispora lusitaniae ATCC 42720]
 gi|238846698|gb|EEQ36162.1| hypothetical protein CLUG_00285 [Clavispora lusitaniae ATCC 42720]
          Length = 565

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 2/207 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I +H+L+ R   +     G+  W+P+G   L+ +  ++ +     GA E+S+  L  +DL
Sbjct: 31  IPTHELLARLQYVSPPKPGLVHWMPMGMLVLNKMKQLVHKHMQDAGAEEISLSALSHSDL 90

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W ++GR+   G E+ RL D         PT EE +T + + ++ SY+NLP  FYQI  KF
Sbjct: 91  WKQTGRWG--GAELFRLKDSKGAEYCLAPTCEEEVTHLVQQNVASYKNLPLLFYQINTKF 148

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++R REF+MKDAYSFD++   +  +Y  M  +Y  +F  L    +   A++
Sbjct: 149 RDEKRPRSGLLRGREFVMKDAYSFDVSEAEAMRAYETMSRAYAGVFAALRAPCVRADADT 208

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKD 226
           G IGG +SHE+  +   GE  +F   D
Sbjct: 209 GEIGGSMSHEWHYVHAAGEDTLFECTD 235



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 40/231 (17%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +  DFP+   N      ++   +VE       A  D    +           S+R IEV 
Sbjct: 338 NLPDFPVKFANRSLVSTLTDVPLVEAEEGELCAHCDSGTLR-----------SSRAIEVA 386

Query: 286 HIFYFGTKYSLPMSATFK--GADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           H FY G +Y+  +  T +  GADG      V MG YGIG  R++AA+ E + D  G+ WP
Sbjct: 387 HTFYLGDRYTRALDCTVEVPGADGTVSRQPVLMGCYGIGISRIIAALAEINRDSHGLRWP 446

Query: 342 DSVAPFKISLINIKAHDQ---VCR---DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            ++AP+ +++++  A +Q   V R   D   ++ AR S             ++G +   +
Sbjct: 447 AAIAPWHVTVVDAGAQEQAHEVARSLGDMEVRLDARPSV------------RLGRKIRES 494

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTG-----IREDMSLEEVINY-ASH 440
             +G PL ++VG ++ +  ++E++ R  G     +R++ S + ++   ASH
Sbjct: 495 HAMGIPLVLVVGKRYPT-VEIEVRGRQHGRSWETVRQESSFDWIVETGASH 544


>gi|294654601|ref|XP_456661.2| DEHA2A07678p [Debaryomyces hansenii CBS767]
 gi|199429004|emb|CAG84617.2| DEHA2A07678p [Debaryomyces hansenii]
          Length = 576

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 120/203 (59%), Gaps = 2/203 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I +H+L  + G I+    G+  WLP+G     NV+ +I        A E+++  L S+ L
Sbjct: 40  IPTHELFTKFGFINHPKPGLVHWLPVGLAISQNVSRVIHRRMRECNAEEINLSLLSSSQL 99

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W E+GR+D+   E+ +L D +        T EE +T +  +++ SY+NLP  +YQI  KF
Sbjct: 100 WQETGRWDN--SELFKLKDSSKNDFCLVATCEEEITKLIGANLNSYKNLPLLYYQINEKF 157

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++R REFLMKDAYSFDL  E +  +YNK+  +Y +IF  L +  +   A++
Sbjct: 158 RDEKRPRSGLLRGREFLMKDAYSFDLNEEAAMKTYNKVVDAYYKIFQDLRIPFVKADADT 217

Query: 200 GPIGGDLSHEFIVLADTGETQVF 222
           G IGG LSHE+  L   GE  +F
Sbjct: 218 GEIGGTLSHEWHYLHKVGEDTLF 240



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 13/168 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK--GADGKDHY--VQMGSYGIGAMRVVAAVIESSHDG 335
           R IEVGH FY G KYS P+    +    DG      V MG YGIG  R++AA+ E + D 
Sbjct: 384 RAIEVGHTFYLGDKYSKPLKCEVEVPNQDGSQQLTNVLMGCYGIGISRIIAAIGEINKDS 443

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
            G  WP  +AP+ ++++     D        K+Y  L+        DD  +  +G +   
Sbjct: 444 TGFRWPSVIAPWNVTVVQSPKFDD---SKGIKVYNLLNAASISYRLDDRSKIGLGKKIKQ 500

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + ++G PL VI+G++F     VE++ R     +D+S + +  Y S  F
Sbjct: 501 SHMVGIPLTVILGNQF---PLVEVEIRGRRYTDDLSWKRL--YESRDF 543


>gi|116180206|ref|XP_001219952.1| hypothetical protein CHGG_00731 [Chaetomium globosum CBS 148.51]
 gi|88185028|gb|EAQ92496.1| hypothetical protein CHGG_00731 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 129/234 (55%), Gaps = 16/234 (6%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +H  ++R G + Q + G++  LPLG +  D V  ++                L+S  LW 
Sbjct: 27  AHAKLIRAGFLRQSNAGMFHMLPLGNRVQDKVERLVASRMEEL---------LES--LWE 75

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +SGR D+   E+ R +DR D   +  PTHEE +T +    +KSY+ LP   YQI  K+RD
Sbjct: 76  KSGRLDNVASELFRFSDRRDVPYLLAPTHEEEITTLAARSVKSYKELPLRLYQITRKYRD 135

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E RPR G++R REF+MKD Y+FD + + +  +YN +  +Y +IF  + L  +  +A SG 
Sbjct: 136 EFRPRHGLLRGREFIMKDLYTFDSSVDSALETYNDVRAAYNQIFSDMKLPVLSAKASSGD 195

Query: 202 IGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSE--NTDFDDIISLNSIVEQW 252
           +GGDLSHE+ +    GE +V  CS    ++ +  E  NT   D ++ +S  E W
Sbjct: 196 MGGDLSHEYHLPTPLGEDRVISCSS--CNYVVNEEVANTAISDEVATDSPFEIW 247



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 93/164 (56%), Gaps = 12/164 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSA--TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +R +E+GH F+ GT+YS P+ A  T   A  +   +QMG YGIG  R++ A  E   D  
Sbjct: 392 SRAMELGHTFFLGTRYSQPLHAMATIPPAT-QPTPLQMGCYGIGISRIIGAAAEHLADQT 450

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG------CDVFWDDMGEQIGS 390
           G+ WP ++AP+   +I  K  D+   DA + +Y ++  +        DV  DD  + +  
Sbjct: 451 GLNWPAAIAPYSCVVIPGKDADE--GDAVQ-VYQQIEGIVGPERRLVDVVLDDRAKSLPW 507

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + A ADL+GFP+ V++G ++ +  +VE++ R  G+++ + + ++
Sbjct: 508 KMADADLIGFPVIVLLGREWRAARRVEVQCRRLGVKQAVEIADL 551


>gi|242768112|ref|XP_002341505.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218724701|gb|EED24118.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 641

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/267 (35%), Positives = 149/267 (55%), Gaps = 13/267 (4%)

Query: 2   RRSKYFLPILQENPRDAEIA---SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P      + AE     ++ L++R G I Q   GI+  LPLG +  + + A+I 
Sbjct: 42  RVSNFWIPTGGIERKAAETVKEDANDLLIRAGFIRQAYSGIFHMLPLGLRVQNKLEALID 101

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 GA ++S+ +L S +LW ++GR  S G E+ +  DR +   +  PTHEE +T + 
Sbjct: 102 RHMESLGASKVSLSSLSSQELWEKTGRLKS-GSEVFKFNDRKESRFLLAPTHEEEITSLV 160

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S + SY+ LP   YQI  K+RDE RPR G++R REF+MKD Y+FD   E +  +Y    
Sbjct: 161 ASLVNSYKELPLRLYQITRKYRDEARPRQGLLRGREFVMKDLYTFDYNAEQALATYEATR 220

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK-DFMDFPIPSEN 236
            +Y RIF  L +  +   A+SG +GG+LSHEF  ++D GE T + CS  D++       N
Sbjct: 221 EAYKRIFDTLKVPYLVAAADSGNMGGNLSHEFHFISDKGEDTLISCSHCDYV------YN 274

Query: 237 TDFDDIISLNSIVEQ-WTAPYAATSDV 262
            +  D  +L +++E+  T P  + S V
Sbjct: 275 EEVSDGRALGTVIEKPLTPPVPSESGV 301



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 21/174 (12%)

Query: 281 GIEVGHIFYFGTKYSLPMSA--------------TFKGADGKDHYVQMGSYGIGAMRVVA 326
            +E+GH FY GT+YS  + A              +      ++  ++MG +GIG  R+++
Sbjct: 464 AVELGHTFYLGTRYSEVLKAKVFVDNSVIKSNESSTNSNKSQNVPMEMGCHGIGVSRMIS 523

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWDDM 384
           AV ++  D +G+ WP ++APF+I ++  +  +       E IY  L +     D+  DD 
Sbjct: 524 AVADARSDIRGLNWPRAIAPFEIIVVPARNLEP----EAENIYDLLRQHTDTSDIILDDR 579

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINY 437
            +Q+G +   ADL+G+P+ +++G  + S+ KVE+  R L G+RED+ L  ++ Y
Sbjct: 580 TKQVGWKLKDADLIGYPIVIVLGKAWKSEHKVEVHCRQLDGLREDVPLGNLVEY 633


>gi|149246389|ref|XP_001527664.1| prolyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146447618|gb|EDK42006.1| prolyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 557

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K +   L +   D ++ +H+L+ + G+I     G+  W   G    D +N I+RE  
Sbjct: 4   RVPKLYCHQLGKFKTDIQVPTHELLAKLGIISYPHSGLVHWGKTGLLIQDKINGIVRENL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +  L   +LW+++GR+  +  ++ +L  +ND+ ++  PT EE +T+  +  
Sbjct: 64  DHLGYEELKLSLLSHKNLWLQTGRW--HQPDLFKL--QNDEYLL-APTAEEEITEYVKRS 118

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SY++LP  +YQI  KFR E RPR G++R REFLMKDAYSFD+    +  +Y  M  +Y
Sbjct: 119 IQSYKHLPVGYYQINEKFRAEKRPRGGLLRGREFLMKDAYSFDIDETSALKTYESMVNAY 178

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             IF  +G+  +  +A+SG IGGDLSHE+ +L   GE  VF
Sbjct: 179 HNIFREIGVPYVKAQADSGDIGGDLSHEWHLLNQNGEDTVF 219



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 28/202 (13%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +F DFPI   N      ++   IV       A   +V  E       E     +  IE+G
Sbjct: 326 NFPDFPINFTNKSMITTLTEVPIV------LARAGEVCGE-----CEEGHLQESNAIEIG 374

Query: 286 HIFYFGTKYSLPMSATFK------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           H FY G KYS P++ T +      G   +  +V+MG YGIG  R++AAV E + D +G+ 
Sbjct: 375 HTFYLGEKYSKPLNLTVEVPTNDNGNTLESRFVKMGCYGIGISRIIAAVAEINRDDRGLR 434

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+AP++ ++I   A         E + ++L ++ C +  D   E+ G +F  +  +G
Sbjct: 435 WPASIAPWEATIITDDA------SKVEAVESQLMQIDCRL--DGRDERFGYKFKASTTMG 486

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
            PL +++G  F     VEI+ R
Sbjct: 487 IPLIIVLGKSF---PHVEIEIR 505


>gi|50290081|ref|XP_447472.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526782|emb|CAG60409.1| unnamed protein product [Candida glabrata]
          Length = 552

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 8/215 (3%)

Query: 15  PRDAEIASHK------LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAI 67
           PR  +I S K      ++   G I +   G+++WLPLG + L  + A++R+  +    AI
Sbjct: 18  PRKVDIQSLKDIPTLDVLQNLGFIRRTQSGLFNWLPLGLRTLHKLEALVRKRMDEDASAI 77

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S+ +L     W ++GR+D    E+ ++ D N       PT EE +T + +++IKSY++
Sbjct: 78  EVSLSSLSPKINWEKTGRWDK-SNELFKVKDNNAFEYCLTPTCEEDITSLMKNYIKSYKD 136

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP T YQI  K+RDE RPR G++R REF+MKDAYSF  + E +   +NKM   Y RIF  
Sbjct: 137 LPITAYQISRKYRDEKRPRGGLLRGREFIMKDAYSFASSEEQAIEIFNKMDSVYDRIFSD 196

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           L +      A+SG IGGDLS E+  L   GE  VF
Sbjct: 197 LKIPYKAAYADSGEIGGDLSKEYHFLNSFGEDTVF 231



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGK 336
           ++  IEVGHIF+ G KYS P    FK  +  D   V MG YGIG  R++ A  E   D  
Sbjct: 378 ASNSIEVGHIFHLGDKYSKPFEVNFKDENNSDDSIVSMGCYGIGISRLIGAAAEIGRDHM 437

Query: 337 GIIWPDSVAPFKISLINIKAHDQVC-RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+ WP  +AP+++S++       V   D  + +   L     D      G   G + A++
Sbjct: 438 GLRWPQVIAPYQVSVVTSNNEGMVAINDMKKSLMKNLDTFDLDDLHRSTG--FGGRIALS 495

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             +G P+ VI+G+K   + ++E++ +     +D  +E+
Sbjct: 496 HAIGIPICVIIGTKSWPNVEIEVRGKKWDNGDDTPIEK 533


>gi|212542487|ref|XP_002151398.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210066305|gb|EEA20398.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 641

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 5/227 (2%)

Query: 2   RRSKYFLPILQENPRDAEIA---SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S ++LP      + AE     ++ L++R G I Q   G++  LPLG +  + + A+I 
Sbjct: 42  RTSNFWLPTGGIERKAAETEKEDANDLLIRAGFIRQAYSGVFHMLPLGLRVQNKLEALID 101

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 GA ++S+ +L S +LW ++GR  S G E+ +  DR +   +  PTHEE +T + 
Sbjct: 102 THMQSLGASKVSLSSLSSQELWEKTGRLKS-GSEVFKFNDRKESRFLLAPTHEEEITSLV 160

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S + SY+ LP   YQI  K+RDE RPR G++R REF+MKD Y+FD   E +  +Y    
Sbjct: 161 ASLVNSYKELPLRLYQISRKYRDEARPRQGLLRGREFVMKDLYTFDYNAEQALATYEATR 220

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
            +Y RIF  L +  +   A+SG +GG+LSHEF  ++D GE T + CS
Sbjct: 221 EAYKRIFDTLKVPYLVAAADSGNMGGNLSHEFHFISDKGEDTLISCS 267



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 35/227 (15%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           ++F + +   D  D +SL  +VE    P  +   +H                  +E+GH 
Sbjct: 425 VEFALLNRFPDSKDGLSLTRVVEGEKCPKCSKGFLHTHN--------------AVELGHT 470

Query: 288 FYFGTKYSLPMSATF---------KGADGKDHYVQ-----MGSYGIGAMRVVAAVIESSH 333
           FY GT+YS  + A             +D   +  Q     MG +GIG  R+++AV ++  
Sbjct: 471 FYLGTRYSEVLKAKVFVDSSATKSNESDSNSNKPQNVPMEMGCHGIGVSRMISAVADACS 530

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQ 391
           D +G+ WP ++APF+I ++  +  +       E +Y  L +     DV  DD  + +G +
Sbjct: 531 DVRGLNWPRAIAPFEIIVVPARNLES----EAENVYDLLRQQTDTSDVILDDRTKHVGWK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINY 437
              AD++G+P+ V+VG  +    K+E+  R L G+RED+ ++ +I+Y
Sbjct: 587 LKDADMIGYPIVVVVGKAWQWAQKLEVHCRQLDGLREDVPVDNLIDY 633


>gi|190345647|gb|EDK37570.2| hypothetical protein PGUG_01668 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 526

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 123/207 (59%), Gaps = 5/207 (2%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           ++ +H+L  + G I+   +G+  W+P G   +  +  II       GA E+++  L SA+
Sbjct: 22  KVPTHQLYTKLGFINHPKQGLVHWMPPGWNMVRKLQTIIHRHMVGAGAEEVNLSLLSSAE 81

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW ++GR+++   E+ +L   ND       T EE +T + ++ I SY++LP  +YQI+ K
Sbjct: 82  LWNKTGRWEN--NELFKL---NDGETCLAATCEEEITQLVKNQIASYKSLPLLYYQIKEK 136

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDE RPR G++R REFLMKDAYSFD+  + +  +YN +  +Y  +F  L +  +   A+
Sbjct: 137 YRDEKRPRGGLLRGREFLMKDAYSFDIDEKSAMETYNTVVNAYHGVFKELKVPYVKAEAD 196

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSK 225
           +G IGG LSHE++ L   GE  VF  K
Sbjct: 197 TGDIGGSLSHEWLYLHPQGEDTVFVCK 223



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 26/206 (12%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           F DFPIP  N  F  I +L  I      P          ++  S  + +   +R IEV H
Sbjct: 322 FPDFPIPFVNRSF--ITTLTDI------PIVT---AEAGEICGSCEDGELECSRAIEVAH 370

Query: 287 IFYFGTKYSLPMSATFK--GADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
            FY G KY+ P+  T +  G +G  ++  + MG YGIG  R++ A+ E   D  G  WP 
Sbjct: 371 TFYLGDKYTDPLECTVQVPGPNGVTEERNLMMGCYGIGLSRIIGAIGEICKDENGFRWPA 430

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFP 401
           +++P+  ++I          +  E +   L  +  D+  D   +  IG +   +  +G P
Sbjct: 431 AISPWTATVI-------TSGELGEDLKQTLESMNIDMCVDSRSKVGIGKKVRQSQAMGIP 483

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + +IVG+K+    ++E+  R  G  E
Sbjct: 484 ISIIVGNKY---PQIEVNVRGVGKDE 506


>gi|119184159|ref|XP_001243013.1| hypothetical protein CIMG_06909 [Coccidioides immitis RS]
          Length = 668

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RSK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +   
Sbjct: 42  RSKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHME 101

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA ++ +  L S  LW  SGR      E+ R  DR +   +  PTHEE +T +     
Sbjct: 102 SLGASKLFLSALSSQLLWKLSGRLHD-DSEVFRFLDRKNAPFLLAPTHEEEITKLVGGLT 160

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+
Sbjct: 161 NSYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYV 220

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
           R+F  L L  I   A+SG +GG L+HEF + +  GE  V  CSK
Sbjct: 221 RLFDELKLPYIVAAADSGSMGGSLNHEFHLESSKGEDIVVSCSK 264



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 21/175 (12%)

Query: 282 IEVGHIFYFGTKYSLPMSATFK-------GADGKDHY------VQMGSYGIGAMRVVAAV 328
           IE+GH F  GT+YS P+ AT          ADG          +QMG YGIG  R++AAV
Sbjct: 492 IEMGHTFLLGTRYSSPLQATVAIDPAKSGNADGAKESPKSVVPLQMGCYGIGVSRMIAAV 551

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMG 385
            +   D +G+ WP ++APF   ++   A     ++  +KIY  ++       D   DD  
Sbjct: 552 ADILADSRGLNWPRAMAPFSAIIVPGLAF----QEDSKKIYDHIASYHNGSIDTILDDRE 607

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
           + +  +   ADL G P+  +VG  +     VE++  RL  +R D+SL+E+ ++ S
Sbjct: 608 QPLIRKLKDADLTGIPVICVVGKSWERHRNVEVQCRRLNNLRTDVSLDELPSFIS 662


>gi|146420078|ref|XP_001485997.1| hypothetical protein PGUG_01668 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 526

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 123/207 (59%), Gaps = 5/207 (2%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           ++ +H+L  + G I+   +G+  W+P G   +  +  II       GA E+++  L SA+
Sbjct: 22  KVPTHQLYTKLGFINHPKQGLVHWMPPGWNMVRKLQTIIHRHMVGAGAEEVNLSLLSSAE 81

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW ++GR+++   E+ +L   ND       T EE +T + ++ I SY++LP  +YQI+ K
Sbjct: 82  LWNKTGRWEN--NELFKL---NDGETCLAATCEEEITQLVKNQIASYKSLPLLYYQIKEK 136

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDE RPR G++R REFLMKDAYSFD+  + +  +YN +  +Y  +F  L +  +   A+
Sbjct: 137 YRDEKRPRGGLLRGREFLMKDAYSFDIDEKLAMETYNTVVNAYHGVFKELKVPYVKAEAD 196

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSK 225
           +G IGG LSHE++ L   GE  VF  K
Sbjct: 197 TGDIGGSLSHEWLYLHPQGEDTVFVCK 223



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 26/206 (12%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           F DFPIP  N  F  I +L  I                 ++  S  + +    R IEV H
Sbjct: 322 FPDFPIPFVNRSF--ITTLTDI---------PIVTAEAGEICGSCEDGELECLRAIEVAH 370

Query: 287 IFYFGTKYSLPMSATFK--GADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
            FY G KY+ P+  T +  G +G  ++  + MG YGIG  R++ A+ E   D  G  WP 
Sbjct: 371 TFYLGDKYTDPLECTVQVPGPNGVTEERNLMMGCYGIGLSRIIGAIGEICKDENGFRWPA 430

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFP 401
           +++P+  ++I          +  E +   L  +  D+  D   +  IG +   +  +G P
Sbjct: 431 AISPWTATVI-------TSGELGEDLKQTLESMNIDMCVDSRSKVGIGKKVRQSQAMGIP 483

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + +IVG+K+    ++E+  R  G  E
Sbjct: 484 ISIIVGNKY---PQIEVNVRGVGKDE 506


>gi|320031958|gb|EFW13915.1| prolyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 668

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RSK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +   
Sbjct: 42  RSKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHME 101

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA ++ +  L S  LW  SGR      E+ R  DR +   +  PTHEE +T +     
Sbjct: 102 SLGASKLFLSALSSQLLWKLSGRLHD-DSEVFRFLDRKNAPFLLAPTHEEEITKLVGGLT 160

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+
Sbjct: 161 NSYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYV 220

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
           R+F  L L  I   A+SG +GG+L+HEF +    GE  V  CSK
Sbjct: 221 RLFDELKLPYIVAAADSGNMGGNLNHEFHLENSKGEDIVVSCSK 264



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 21/175 (12%)

Query: 282 IEVGHIFYFGTKYSLPMSATFK-------GADGKDHY------VQMGSYGIGAMRVVAAV 328
           IE+GH F  GT+YS P+ AT          ADG          +QMG YGIG  R++AAV
Sbjct: 492 IEMGHTFLLGTRYSSPLQATVAIDPAKSVNADGAKESPKSVVPLQMGCYGIGVSRMIAAV 551

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMG 385
            +   D +G+ WP ++APF   ++   A     ++  +KIY  ++       D   DD  
Sbjct: 552 ADILADSRGLNWPRAMAPFSAIIVPGLAF----QEDSKKIYDHIASYHNGSIDTILDDRE 607

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
           + +  +   ADL G P+  +VG  +     VE++  RL  +R D+SL+E+ ++ S
Sbjct: 608 QPLIRKLKDADLTGIPVICVVGKSWERHRNVEVQCRRLNNLRTDVSLDELPSFIS 662


>gi|238498424|ref|XP_002380447.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220693721|gb|EED50066.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 627

 Score =  152 bits (384), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 134/227 (59%), Gaps = 5/227 (2%)

Query: 2   RRSKYFLP---ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P   I ++N +  +   + L++R G + Q   GI+  LPLG +  D +  +I 
Sbjct: 40  RVSNFWIPTGGISKKNIQGEKEDVNDLLVRGGFLRQAYSGIFHMLPLGLRVQDKLERLID 99

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +     GA ++S+ ++ S +LW  SGR    G E+ +  DR +   +  PTHEE +T + 
Sbjct: 100 KHMRSVGASKVSLSSISSQELWERSGRLGE-GSEVFKFHDRKESRFLLAPTHEEEITTLV 158

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T E +  +Y  + 
Sbjct: 159 GSLAKSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYTFDCTVEEALETYTSVK 218

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
            +Y R+F+ L +  +   A+SG +GG+LSHEF V +  GE T + C+
Sbjct: 219 AAYTRLFNDLKIPYLVAAADSGNMGGNLSHEFHVPSSKGEDTVISCT 265



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 15/168 (8%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF----KGADGKDHYV---QMGSYGIGAMRVVAAVIESSH 333
            IE+GH F+ GT+YS  + A+       +   +H V   QMG +GIG  R++ AV +S  
Sbjct: 456 AIELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQMGCHGIGVSRMITAVADSLA 515

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK---VGCDVFWDDMGEQIGS 390
           D KG+ WP +VAPF++ ++  K  ++      EKIY  L+       DV  DD  +Q+G 
Sbjct: 516 DSKGLNWPRAVAPFEVIVVPAKGLEE----EAEKIYDTLTSDPASPVDVILDDRDKQMGW 571

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINY 437
           +   ADL+G+P+ V+VG  +  +  +E++ R L  +RE++ LE++  +
Sbjct: 572 KLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVPLEQLSTF 619


>gi|317155666|ref|XP_001825276.2| prolyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 627

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 134/227 (59%), Gaps = 5/227 (2%)

Query: 2   RRSKYFLP---ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P   I ++N +  +   + L++R G + Q   GI+  LPLG +  D +  +I 
Sbjct: 40  RVSNFWIPTGGISKKNIQGEKEDVNDLLVRGGFLRQAYSGIFHMLPLGLRVQDKLERLID 99

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +     GA ++S+ ++ S +LW  SGR    G E+ +  DR +   +  PTHEE +T + 
Sbjct: 100 KHMRSVGASKVSLSSISSQELWERSGRLGE-GSEVFKFHDRKESRFLLAPTHEEEITTLV 158

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T E +  +Y  + 
Sbjct: 159 GSLAKSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYTFDCTVEEALETYTSVK 218

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
            +Y R+F+ L +  +   A+SG +GG+LSHEF V +  GE T + C+
Sbjct: 219 AAYTRLFNDLKIPYLVAAADSGNMGGNLSHEFHVPSSKGEDTVISCT 265



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 96/168 (57%), Gaps = 15/168 (8%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF----KGADGKDHYV---QMGSYGIGAMRVVAAVIESSH 333
            +E+GH F+ GT+YS  + A+       +   +H V   QMG +GIG  R++ AV +S  
Sbjct: 456 AVELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQMGCHGIGVSRMITAVADSLA 515

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK---VGCDVFWDDMGEQIGS 390
           D KG+ WP +VAPF++ ++  K  ++      EKIY  L+       DV  DD  +Q+G 
Sbjct: 516 DSKGLNWPRAVAPFEVIVVPAKGLEE----EAEKIYDTLTSDPASPVDVILDDRDKQMGW 571

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINY 437
           +   ADL+G+P+ V+VG  +  +  +E++ R L  +RE++ LE++  +
Sbjct: 572 KLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVPLEQLSTF 619


>gi|164422625|ref|XP_958617.2| hypothetical protein NCU09892 [Neurospora crassa OR74A]
 gi|157069749|gb|EAA29381.2| predicted protein [Neurospora crassa OR74A]
          Length = 631

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 118/202 (58%), Gaps = 1/202 (0%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLW 80
           +H  ++R G + Q   GI+  LPLG++  D V  ++ +    +  A  +S+ ++ S  LW
Sbjct: 113 AHSKLVRAGFLRQSHAGIFHMLPLGKRVQDKVERLVAKHMEESLAASRVSLSSISSEALW 172

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             SGR  +   E+ R  DR   A +  PTHEE +T +    ++SY++LP   YQI  KFR
Sbjct: 173 ERSGRLPNIAPELFRFPDRKGSAYLLSPTHEEEITYLVAQTVRSYKDLPLRLYQITRKFR 232

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DELRPR G++R REF+MKD Y+FD     +  +Y K+  +Y RIF+ + L  +  +A SG
Sbjct: 233 DELRPRHGLLRGREFIMKDLYTFDTDLTSALDTYEKVRAAYSRIFNDMKLPVLAAKASSG 292

Query: 201 PIGGDLSHEFIVLADTGETQVF 222
            +GGDLSHE+ + +  GE  + 
Sbjct: 293 DMGGDLSHEYHLPSPFGEDNII 314



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 25/144 (17%)

Query: 280 RGIEVGHIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSYGIGAMRV 324
           + +E+GH F+ GT+YS P+ A               T      K   +QMG +GIG  RV
Sbjct: 491 KAMELGHTFHLGTRYSQPLGAKISLPPPSSSEAKPSTGDSGTSKTVSMQMGCHGIGISRV 550

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-LSKVG-----CD 378
           + AV E   D KG+ WP ++AP+  + I + A D    D   ++Y R L+ +G      D
Sbjct: 551 IGAVAEHLADDKGLNWPVAIAPY--TCIVVFAEDNY--DDAVEVYKRILNGIGDQDERLD 606

Query: 379 VFWDDMGEQIGSQFAVADLLGFPL 402
           +  DD  + +  +   ADL+ F L
Sbjct: 607 IILDDRQKSLPWKLKDADLIDFEL 630


>gi|303320217|ref|XP_003070108.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109794|gb|EER27963.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 668

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RSK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +   
Sbjct: 42  RSKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHME 101

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA ++ +  L S  LW  SGR      E+ R  DR     +  PTHEE +T +     
Sbjct: 102 SLGASKLFLSALSSQLLWKLSGRLHD-DSEVFRFLDRKYAPFLLAPTHEEEITKLVGGLT 160

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+
Sbjct: 161 NSYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYV 220

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSK 225
           R+F  L L  I   A+SG +GG+L+HEF +    GE  V  CSK
Sbjct: 221 RLFDELKLPYIVAAADSGNMGGNLNHEFHLENSKGEDIVVSCSK 264



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 21/175 (12%)

Query: 282 IEVGHIFYFGTKYSLPMSATFK-------GADGKDHY------VQMGSYGIGAMRVVAAV 328
           IE+GH F  GT+YS P+ AT          ADG          +QMG YGIG  R++AAV
Sbjct: 492 IEMGHTFLLGTRYSSPLQATVAIDPAKSVNADGAKESPKSVVPLQMGCYGIGVSRMIAAV 551

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMG 385
            +   D +G+ WP ++APF   ++   A     ++  +KIY  ++       D   DD  
Sbjct: 552 ADILADSRGLNWPRAMAPFSAIIVPGLAF----QEDSKKIYDHIASYHNGSIDTILDDRE 607

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
             +  +   ADL G P+  +VG  +     VE++  RL  +R D+SL+E+ ++ S
Sbjct: 608 RPLIRKLKDADLTGIPVICVVGKSWERHRNVEVQCRRLNNLRTDVSLDELPSFIS 662


>gi|258569006|ref|XP_002585247.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237906693|gb|EEP81094.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 598

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/230 (39%), Positives = 127/230 (55%), Gaps = 5/230 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +++P      +  +   ++L++R G I Q   GI+  LPLG +    +  +I +  
Sbjct: 12  RLSTFWVPTGGVAEKSKKKDGNELLVRAGFIRQAYSGIFHLLPLGLRVQQKLENLIDKHM 71

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA ++S+ +L S +LW  SGR +    E+ R  DR   + +  PTHEE +T +  S 
Sbjct: 72  QSIGASKLSLSSLSSQELWKRSGRLND-DSEIFRFNDRKGASFLLAPTHEEEITALVGSL 130

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSYR+LP   YQI  K+RDE RPR G++R REFLMKD Y+FD + E    +YN +   Y
Sbjct: 131 VKSYRDLPLRVYQITRKYRDEPRPRQGLLRGREFLMKDLYTFDYSAEKGLDTYNTVKEVY 190

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF----CSKDF 227
            RIF  L L  +   A+SG +GGDLSHEF      GE  V     CS  F
Sbjct: 191 TRIFDDLRLPYLVAAADSGNMGGDLSHEFHFENPNGEDTVITCTNCSHAF 240



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 25/177 (14%)

Query: 282 IEVGHIFYFGTKYSLPMSATF----------KGADGKDHYV---QMGSYGIGAMRVVAAV 328
           IE+GH F+ GT+YS  + A            KG +G    +   +MG +GIG  R+++AV
Sbjct: 422 IELGHTFHLGTRYSSALQANVAVDPTKLIGGKGPEGASSVLVPLEMGCHGIGVSRMISAV 481

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY-----ARLSKVGCDVFWDD 383
                D KG+ WP  +APF   +   K  +Q   DA E++Y      ++S +  D   DD
Sbjct: 482 ATMLADHKGLKWPQVIAPFSAVICFGKGFEQ---DA-EQVYDALVSGQMSPI--DAVLDD 535

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYAS 439
                  +   ADL+GFP+ +++G ++ S   VE++ R L   ++D+ L E+ +  S
Sbjct: 536 RSHTFPWKLKDADLIGFPVILVLGKQWRSSKLVEVQCRQLDNFKDDVPLNELPSVVS 592


>gi|169836892|ref|ZP_02870080.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 568

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 137/242 (56%), Gaps = 10/242 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRR++ F    + +P      + +L++R G I +   G+Y++LPLG K ++N+ +I+REE
Sbjct: 1   MRRTELFTKTNKTSPSGEVSKNAQLLIRAGFIAKEMAGVYAFLPLGLKVVENIKSIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            N+ G+ E+ +  LQ  ++W ++ R+ D+      +   ++D  +  G +HEE + ++ R
Sbjct: 61  MNKIGSKELLMTNLQRKEVWEKTNRWNDNIVDIWFKTKLKDDTEVGLGWSHEEPIVNMMR 120

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+SY++LP + YQ Q K R+ELR + G+MR REF+MKD YSF  T E  +  Y+K+  
Sbjct: 121 QFIRSYKDLPVSVYQFQNKMRNELRAKSGIMRGREFVMKDMYSFHATKEDLEEYYHKVME 180

Query: 180 SYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +Y + + RLG+     +   SG      SHEF  + D GE  ++         +PS N  
Sbjct: 181 AYEQCYRRLGVGDDTYVTFASGGAFTKFSHEFQTVCDAGEDDIYI--------VPSMNIA 232

Query: 239 FD 240
           ++
Sbjct: 233 YN 234



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +  R  EVG+IF FG++ +  M   +  + G+   + +GSYGIG  R++  + E   D K
Sbjct: 407 IRKRTAEVGNIFNFGSQKTDEMELYYTDSKGEQKSIFLGSYGIGITRIMGVIAEKLSDEK 466

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++WP  +AP K+ L++I + D +     +++Y  +   G +V +DD   + G +F   +
Sbjct: 467 GLVWPVDIAPAKVYLVSIGSGDAIKE--ADRLYELMKIKGIEVIYDDRDVRPGEKFTDGE 524

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           L+G P  V V  + +     E K R TG    ++ +E+ +  S 
Sbjct: 525 LMGIPHMVTVSDRLIKTGNFEHKLRSTGEVSLLTQDELFDTISQ 568


>gi|289616456|emb|CBI56771.1| unnamed protein product [Sordaria macrospora]
          Length = 542

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 118/202 (58%), Gaps = 1/202 (0%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLW 80
           +H  ++R G + Q   GI+  LPLG++  D V  ++ +    +  A  +S+ ++ S  LW
Sbjct: 27  AHSKLIRAGFLRQSHAGIFHMLPLGKRVQDKVERLVAKHMEESLAASRVSLSSISSEALW 86

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             SGR  +   E+ R  DR   A +  PTHEE +T++    ++SY++LP   YQI  KFR
Sbjct: 87  ERSGRLQNIAPELFRFLDRKGGAYLLSPTHEEEITNLVAQTVRSYKDLPLRLYQITRKFR 146

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DELRPR G++R REF MKD Y+FD     +  +Y K+  +Y RIF+ + L  +  +A SG
Sbjct: 147 DELRPRHGLLRGREFTMKDLYTFDTDLRSALDTYEKVRGAYSRIFNDMKLPVLAAKASSG 206

Query: 201 PIGGDLSHEFIVLADTGETQVF 222
            +GGDLSHE+ + +  GE  V 
Sbjct: 207 DMGGDLSHEYHLPSPFGEDSVI 228



 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 25/142 (17%)

Query: 280 RGIEVGHIFYFGTKYSLPMSA-------------TFKGADGKDHYV--QMGSYGIGAMRV 324
           + +E+GH F+ GT+YS P++A             T  G  G    V  QMG +GIG  RV
Sbjct: 404 KAMELGHTFHLGTRYSEPLNAKISLPPPSPNEAKTSPGGSGTSKTVSMQMGCHGIGISRV 463

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-LSKVG-----CD 378
           + AV E   D KG+ WP ++AP+   ++  + H     DA E +Y R L   G      D
Sbjct: 464 MGAVAEHLADDKGLNWPVAIAPYTCVVVFAEDH---YNDAVE-VYKRILDGSGDQDERLD 519

Query: 379 VFWDDMGEQIGSQFAVADLLGF 400
           +  DD  + +  +   A LL F
Sbjct: 520 IILDDRQKSLPWKLKDATLLVF 541


>gi|6320931|ref|NP_011010.1| Aim10p [Saccharomyces cerevisiae S288c]
 gi|731489|sp|P39965|SYPM_YEAST RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Altered inheritance rate of mitochondria
           protein 10; AltName: Full=Proline--tRNA ligase;
           Short=ProRS
 gi|603325|gb|AAB64642.1| Yer087wp [Saccharomyces cerevisiae]
 gi|285811719|tpg|DAA07747.1| TPA: Aim10p [Saccharomyces cerevisiae S288c]
          Length = 576

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 3/230 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R    F P    N       + +L+   G + +   G++ WLPLG ++L+ V+  IR   
Sbjct: 9   RSCHIFHPKSLSNNTLKSETTQELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRM 68

Query: 62  NRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           +  G AIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ ++
Sbjct: 69  DSDGGAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I SY+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +
Sbjct: 127 YIASYKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDT 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y +IF  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D 
Sbjct: 187 YNKIFKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDI 236



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 26/210 (12%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +F DFP+     +    IS  SIV           D    ++     E +    + IEVG
Sbjct: 334 NFPDFPLKKYLKNNFGQISDVSIV-----------DAQENEICGKCEEGRLEPLKSIEVG 382

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           HIF  G KYS P++  F   + K+  +V MG YGIG  R+V A+ E   D  G  WP  +
Sbjct: 383 HIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRWPAIM 442

Query: 345 APFKISLI---NIKAHDQVCRDACEKIY-----ARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           AP+K+S+    N   + Q  +D   ++        L     D F + +G  IG++  ++ 
Sbjct: 443 APYKVSICTGPNNPENSQRLQDVKSELLNDPTMQNLQNDILDQFNEKLG--IGARIKLSH 500

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +G PL VIVGSK   + ++E++    GIR
Sbjct: 501 AMGIPLCVIVGSKSWPNVEIEVR----GIR 526


>gi|151944803|gb|EDN63062.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190405650|gb|EDV08917.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|259146006|emb|CAY79266.1| EC1118_1E8_2102p [Saccharomyces cerevisiae EC1118]
          Length = 576

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 125/211 (59%), Gaps = 3/211 (1%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADL 79
            + +L+   G + +   G++ WLPLG ++L+ V+  IR   +  G AIE+S+  + S  L
Sbjct: 28  TTQELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRMDSDGGAIEVSLSAISSKAL 87

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  + R+++   E+ +L D   K      T EE +TD+ +++I SY+++P T YQ+  K+
Sbjct: 88  WQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIASYKDMPITIYQMTRKY 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+S
Sbjct: 146 RDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADS 205

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           G IGG+ S EF ++ ++GE  +   K   D 
Sbjct: 206 GDIGGEFSKEFHLIHESGEDTLMSCKHCGDI 236



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 26/210 (12%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +F DFP+     +    IS  SIV           D    ++     E +    + IEVG
Sbjct: 334 NFPDFPLKKYLKNNFGQISDVSIV-----------DAQENEICGKCEEGRLEPLKSIEVG 382

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           HIF  G KYS P++  F   + K+  +V MG YGIG  R+V A+ E   D  G  WP  +
Sbjct: 383 HIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRWPAIM 442

Query: 345 APFKISLI---NIKAHDQVCRDACEKIY-----ARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           AP+K+S+    N   + Q  +D   K+        L     D F + +G  IG++  ++ 
Sbjct: 443 APYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQNLQNDILDQFNEKLG--IGARIKLSH 500

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +G PL VIVGSK   + ++EI+    GIR
Sbjct: 501 AMGIPLCVIVGSKSWPNVEIEIR----GIR 526


>gi|156089629|ref|XP_001612221.1| tRNA synthetase class II core domain containing protein [Babesia
           bovis]
 gi|154799475|gb|EDO08653.1| tRNA synthetase class II core domain containing protein [Babesia
           bovis]
          Length = 439

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 166/388 (42%), Gaps = 74/388 (19%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           + + G++   S GI + LP+G++ ++ +  +I  E +R GA E+ +P L S+D   E  R
Sbjct: 48  LRKPGILTHMSPGISTVLPIGKRIVNRIERVIHVEMSRIGAKEVELPMLLSSDTINE--R 105

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDEL 143
            + +G+E+  L DRN K     PT EE++  +    +   S RNLP   YQI  KFRDE 
Sbjct: 106 RNEFGRELFSLTDRNGKHYDLCPTCEELICRMLDKALSPLSKRNLPIYLYQIGRKFRDEA 165

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP    MR REF+MKDAYSF    + +   YNK   +Y RIF  L               
Sbjct: 166 RPCNSNMRCREFIMKDAYSFHSDKDSAAMDYNKFKQAYERIFTLL--------------- 210

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +LS + + + DT                                               
Sbjct: 211 -ELSFDTVTIGDT----------------------------------------------- 222

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E  F ++  NK+     +E+ HIF  G   +      ++G     H V + SYGIG  R
Sbjct: 223 -EHEFRAMLPNKKTL---MEIAHIFQLGDAITTEAGLKYEGEGRMKHPVYLNSYGIGIHR 278

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A      D +GI  P  +AP+ +++I     D+    A   IY  LSK G D F D 
Sbjct: 279 LLQAAASQHADSEGIRLPQIIAPYDVAVIPC---DENSEQASADIYTLLSKRGIDTFLDT 335

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFV 411
               I  + +    +G P  V V S + 
Sbjct: 336 RKAPINQRVSDMMNIGIPHIVYVSSVYT 363


>gi|256271449|gb|EEU06503.1| YER087W-like protein [Saccharomyces cerevisiae JAY291]
          Length = 576

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 125/211 (59%), Gaps = 3/211 (1%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADL 79
            + +L+   G + +   G++ WLPLG ++L+ V+  IR   +  G AIE+S+  + S  L
Sbjct: 28  TTQELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRMDSDGGAIEVSLSAISSKAL 87

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  + R+++   E+ +L D   K      T EE +TD+ +++I SY+++P T YQ+  K+
Sbjct: 88  WQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIASYKDMPITIYQMTRKY 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+S
Sbjct: 146 RDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADS 205

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           G IGG+ S EF ++ ++GE  +   K   D 
Sbjct: 206 GDIGGEFSKEFHLIHESGEDTLMSCKHCGDI 236



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 100/210 (47%), Gaps = 26/210 (12%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +F DFP+     +    IS  SIV           D    ++     E +    + IEVG
Sbjct: 334 NFPDFPLKKYLKNNFGQISDVSIV-----------DAQENEICGKCEEGRLEPLKSIEVG 382

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           HIF  G KYS P++  F   + K+  +V MG YGIG  R+V A+ E   D  G  WP  +
Sbjct: 383 HIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRWPAIM 442

Query: 345 APFKISLI---NIKAHDQVCRDACEKIY-----ARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           AP+K+S+    N   + Q  +D   K+        L     D F + +G  IG++  ++ 
Sbjct: 443 APYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQNLQNDILDQFNEKLG--IGARIKLSH 500

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +G PL VI+GSK   + ++EI+    GIR
Sbjct: 501 AMGIPLCVIIGSKSWPNVEIEIR----GIR 526


>gi|83774018|dbj|BAE64143.1| unnamed protein product [Aspergillus oryzae]
          Length = 632

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 122/203 (60%), Gaps = 2/203 (0%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           + L++R G + Q   GI+  LPLG +  D +  +I +     GA ++S+ ++ S +LW  
Sbjct: 69  NDLLVRGGFLRQAYSGIFHMLPLGLRVQDKLERLIDKHMRSVGASKVSLSSISSQELWER 128

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           SGR    G E+ +  DR +   +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE
Sbjct: 129 SGRLGE-GSEVFKFHDRKESRFLLAPTHEEEITTLVGSLAKSYRDLPLRVYQISRKYRDE 187

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            RPR G++R REF+MKD Y+FD T E +  +Y  +  +Y R+F+ L +  +   A+SG +
Sbjct: 188 PRPRQGLLRGREFIMKDLYTFDCTVEEALETYTSVKAAYTRLFNDLKIPYLVAAADSGNM 247

Query: 203 GGDLSHEFIVLADTGE-TQVFCS 224
           GG+LSHEF V +  GE T + C+
Sbjct: 248 GGNLSHEFHVPSSKGEDTVISCT 270



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 96/168 (57%), Gaps = 15/168 (8%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF----KGADGKDHYV---QMGSYGIGAMRVVAAVIESSH 333
            +E+GH F+ GT+YS  + A+       +   +H V   QMG +GIG  R++ AV +S  
Sbjct: 461 AVELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQMGCHGIGVSRMITAVADSLA 520

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK---VGCDVFWDDMGEQIGS 390
           D KG+ WP +VAPF++ ++  K  ++      EKIY  L+       DV  DD  +Q+G 
Sbjct: 521 DSKGLNWPRAVAPFEVIVVPAKGLEE----EAEKIYDTLTSDPASPVDVILDDRDKQMGW 576

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINY 437
           +   ADL+G+P+ V+VG  +  +  +E++ R L  +RE++ LE++  +
Sbjct: 577 KLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVPLEQLSTF 624


>gi|255711434|ref|XP_002552000.1| KLTH0B04906p [Lachancea thermotolerans]
 gi|238933378|emb|CAR21562.1| KLTH0B04906p [Lachancea thermotolerans]
          Length = 568

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 117/203 (57%), Gaps = 3/203 (1%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADL 79
           ++H L+   G I Q   G+  WLPLG + L+ +  II+      G A E+S+  L    L
Sbjct: 29  STHNLLQSLGYIKQTQSGLVHWLPLGLRTLNKITNIIKHRMETDGKAEEVSLSLLSPKSL 88

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           WV + R+D+   E+ +L D         PT EE +T +  S++ SY++LP T YQ+  K+
Sbjct: 89  WVHTNRWDN--GELFKLKDSKGSDYCLAPTCEEEITSLIGSYVTSYKDLPMTVYQVGRKY 146

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++R REFLMKDAYSFD + E +  ++  M  +Y  IF  LG+  +   A+S
Sbjct: 147 RDEKRPRGGLLRGREFLMKDAYSFDASKEEAVRTFESMNHTYDLIFKDLGVPFVSAWADS 206

Query: 200 GPIGGDLSHEFIVLADTGETQVF 222
           G IGGD+S E+    ++GE  V 
Sbjct: 207 GDIGGDMSKEYHYTHESGEDTVM 229



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A+  D    +L  S  E    S R IEVGH F+ G KYS P++A F   +  + Y +MG 
Sbjct: 357 ASIVDAEAGELCGSCEEGHLSSKRSIEVGHTFFLGQKYSEPLNAKFSTRENTEEYCEMGC 416

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+V A+   + D  G+ WP +VAP++IS+   K  + V      ++   LS  G
Sbjct: 417 YGIGVSRLVGAIAHVTRDDAGLRWPRAVAPYEISICAAKQDELVA-----EVEGLLSSWG 471

Query: 377 CDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +V+ + D    +G + A +  LG P+ VIVG K     ++E++  L G R
Sbjct: 472 REVWVNRDEKAGLGRKIAASHSLGIPVCVIVGKKSWPCVEIEVRAPLVGER 522


>gi|320582734|gb|EFW96951.1| prolyl-tRNA synthetase, putative [Pichia angusta DL-1]
          Length = 536

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 119/205 (58%), Gaps = 7/205 (3%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           A++ + +L+++ G + Q + G+  WLPLG   + N+  IIR+  ++ G  E+S+  +   
Sbjct: 22  ADLTTTELLMKAGYVSQPNAGLTHWLPLGLSTIRNIEEIIRKHHDKAGCQEVSLSVMSHQ 81

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            LW ++GR+ +   E+ ++ D          T EE MT + +    SY+ LP   YQI  
Sbjct: 82  SLWDKTGRWQN--DELFKVGD-----FCLAATAEEEMTQLVQRTADSYKKLPVIAYQIGR 134

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           K+R+E RPR G++R REF+MKDAYSFD+    +  S+ KM   Y  IF  L +  +   A
Sbjct: 135 KYRNEKRPRGGLLRGREFVMKDAYSFDVDQSSALRSFEKMNQVYYDIFKELNVPFVKANA 194

Query: 198 ESGPIGGDLSHEFIVLADTGETQVF 222
           +SG IGGDLS+E+  L+++GE  + 
Sbjct: 195 DSGAIGGDLSYEWHFLSESGEDTLL 219



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 8/157 (5%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            K  S +GIEVGH FY G +YS P+ A F  ++G+  + +MG YGIG  R+VAA+ E + 
Sbjct: 355 GKLKSFKGIEVGHTFYLGKRYSEPLDAGFVDSEGRRQHYEMGCYGIGVSRLVAAIAEVTR 414

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G+ WP SVAP ++ ++   ++      A EK  ++L   G     D     +G + A
Sbjct: 415 DADGLRWPASVAPIQVDIVVAGSYTGDL-GAVEKFCSQLD--GLRYRVDATEGHLGEKLA 471

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            +  LG PLQVI+G ++    K+EI+  L G+R D+ 
Sbjct: 472 RSKRLGTPLQVIIGKQY---PKIEIE--LRGLRRDLG 503


>gi|218186121|gb|EEC68548.1| hypothetical protein OsI_36857 [Oryza sativa Indica Group]
          Length = 490

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 113/186 (60%), Gaps = 3/186 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 298 PLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVL 357

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H      A  E++Y  
Sbjct: 358 TMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVQALAEELYNT 417

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E K+R  G ++ +  
Sbjct: 418 LRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDNEEIEYKNRRVGEKQMIKT 477

Query: 432 EEVINY 437
            E++++
Sbjct: 478 GEIVDF 483



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 69/91 (75%)

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +IQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL   
Sbjct: 52  KIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYEAYSKIFSRMGLDFR 111

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           P++A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 112 PVQADTGSIGGSASHEFQVLADSGEDDIVFS 142



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +    R+E
Sbjct: 1  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKIQTKFRDE 60


>gi|255722445|ref|XP_002546157.1| prolyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240136646|gb|EER36199.1| prolyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 559

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 122/204 (59%), Gaps = 4/204 (1%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+L+ + G I     G+ +W   G    + +++IIR   +  G  E+S+  +    
Sbjct: 28  DIPTHELLTKLGFITYPRSGLVNWSKSGLLIQNKISSIIRSRMDEIGFEELSLSLISYKK 87

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW E+GR+D    E+ +L    D+ ++  PT EE +TD    +++SY+ LP   YQI  K
Sbjct: 88  LWQETGRWDK-STEIFKL--EGDEYLLV-PTAEEEITDYINKNLESYKQLPILMYQINPK 143

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FR+E RPR G++R +EFLMKDAYSFDL    + ++Y K+  +Y +IF  L +  +  +A+
Sbjct: 144 FRNEKRPRGGLLRGKEFLMKDAYSFDLDESNAMNTYEKVVGAYHKIFGDLKIPYVKAQAD 203

Query: 199 SGPIGGDLSHEFIVLADTGETQVF 222
           SG IGG LSHE+  + +TGE  VF
Sbjct: 204 SGDIGGSLSHEWHYINETGEDTVF 227



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 11/144 (7%)

Query: 273 ENKRVSAR-GIEVGHIFYFGTKYSLPMSA-----TFKGADGKDHYVQMGSYGIGAMRVVA 326
           E+  +SA+  IEVGH FY G KYS P++      T +G   K   + MG YGIG  R++A
Sbjct: 361 EDGEISAQNAIEVGHTFYLGDKYSKPLNCNIDVPTAEGGMNK-QTIMMGCYGIGISRIIA 419

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+ + + D KG+ WP S+AP++++ + I   ++  ++    ++  L+    D   DD  E
Sbjct: 420 AIAQINRDSKGLNWPRSIAPWEVTAVEIGQDEERTKE----VFKLLNHGKIDYRLDDRNE 475

Query: 387 QIGSQFAVADLLGFPLQVIVGSKF 410
            +G +   ++L+G PL +I+G  +
Sbjct: 476 SMGKKLKQSNLMGIPLSIILGKHY 499


>gi|326479249|gb|EGE03259.1| prolyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 631

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           + S+ L++R G + Q   G++  LPLG +  + +  +I +   +  A ++S+ +L S  L
Sbjct: 59  VDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDKHMRKLSAAKLSLSSLSSQAL 118

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W +SGR      E+ R  DR     +  PTHEE +T +    IKSYR+LP   YQI  K+
Sbjct: 119 WKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVSGLIKSYRDLPLRVYQISRKY 178

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++R REF+MKD Y+FD T   +  +YN +  +Y+ +F  L L  +   A S
Sbjct: 179 RDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKEAYISLFKELKLPYVVASASS 238

Query: 200 GPIGGDLSHEFIVLADTGE-TQVFCSK 225
           G +GG+LSHEF   +  GE T V CSK
Sbjct: 239 GNMGGNLSHEFHFPSPKGEDTIVSCSK 265



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 14/178 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSA-------TFKGADGKDHY----VQMGSYGIGAMRVVAAV 328
           + IE+ H F+ GT+YS  + A       +  GA+ K       +QMG +GIG  R+++AV
Sbjct: 454 QSIELAHTFHLGTRYSEVLQANVSINPASLPGAEKKGKQEPVPIQMGCHGIGVSRMISAV 513

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   D KG+ WP ++APF++ ++  K  ++   +    I  + ++   D   DD  +  
Sbjct: 514 SDILADEKGLNWPQAIAPFQVVVVPGKGLEKEG-ELVYDIVTQNTQQLIDTILDDRKKDF 572

Query: 389 GSQFAVADLLGFPLQVIVG-SKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFSN 444
             +   AD +G+P+ + VG + + + +KVE++  RL  +R  +SLEEV  + S   SN
Sbjct: 573 AWKLRDADTIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTQVSLEEVPEFVSSLLSN 630


>gi|45185919|ref|NP_983635.1| ACR233Wp [Ashbya gossypii ATCC 10895]
 gi|44981709|gb|AAS51459.1| ACR233Wp [Ashbya gossypii ATCC 10895]
          Length = 562

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 116/201 (57%), Gaps = 2/201 (0%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +H+L+   G I Q   G+  WLPLG + L NV  I+R+  +  G  E+ + TL    LW 
Sbjct: 32  THELLQGLGYIRQSQSGLVHWLPLGLRCLRNVENIVRKRMDECGGQELQLSTLSPETLWQ 91

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            +GR+++  KE+ +L D   +      T EE +T +    ++SY++LP   YQI  K+RD
Sbjct: 92  RTGRWEN--KELFKLRDAKGRNYCLSATCEEDVTWLMSECLESYKDLPSLVYQIGTKYRD 149

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           ELRPR G++RSREFLMKDAYSF    + +   ++KM   Y +IF  L +      A+ G 
Sbjct: 150 ELRPRGGLLRSREFLMKDAYSFHADSQDAMQMFHKMKQVYDQIFTDLKVPFKSAAADCGS 209

Query: 202 IGGDLSHEFIVLADTGETQVF 222
           IGG+LS E+  + + GE  ++
Sbjct: 210 IGGELSREYHYIHEKGEDVLY 230



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGH FY G  YS  + A  +    +   ++MG YGIG  R+V A+ + + D +G+ WP
Sbjct: 381 IEVGHCFYLGRTYSEALGAAVRMRTNETTTLEMGCYGIGISRLVGAIADVTRDSQGLCWP 440

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             VAP+K+SL N    D       E +    S +  + +    G  +G+   ++  LG P
Sbjct: 441 SCVAPYKVSL-NYAGED-------ENVRTVRSLLSLEPYESPAGTSLGASLQLSQQLGIP 492

Query: 402 LQVIVGSKFVSDSKVEIKHR 421
           L VIVG K     ++E++ R
Sbjct: 493 LSVIVGKKSWPHVEIEVRGR 512


>gi|326474290|gb|EGD98299.1| prolyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 631

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           + S+ L++R G + Q   G++  LPLG +  + +  +I +   +  A ++S+ +L S  L
Sbjct: 59  VDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDKHMRKLSAAKLSLSSLSSQAL 118

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W +SGR      E+ R  DR     +  PTHEE +T +    IKSYR+LP   YQI  K+
Sbjct: 119 WKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVSGLIKSYRDLPLRVYQISRKY 178

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++R REF+MKD Y+FD T   +  +YN +  +Y+ +F  L L  +   A S
Sbjct: 179 RDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKEAYISLFKELKLPYVVASASS 238

Query: 200 GPIGGDLSHEFIVLADTGE-TQVFCSK 225
           G +GG+LSHEF   +  GE T V CSK
Sbjct: 239 GNMGGNLSHEFHSPSPKGEDTIVSCSK 265



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 14/178 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSA-------TFKGAD--GKDHYV--QMGSYGIGAMRVVAAV 328
           + IE+ H F+ GT+YS  + A       +  GA+  GK   V  QMG +GIG  R+++AV
Sbjct: 454 QSIELAHTFHLGTRYSEVLQANVSINPASLPGAEKKGKQELVPIQMGCHGIGVSRMISAV 513

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   D KG+ WP ++APF++ ++  K  ++   +    I  + ++   D   DD  +  
Sbjct: 514 SDILADEKGLNWPQAIAPFQVVVVPGKGLEKEG-ELVYDIVTQNTQQLIDTILDDRKKDF 572

Query: 389 GSQFAVADLLGFPLQVIVG-SKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFSN 444
             +   AD +G+P+ + VG + + + +KVE++  RL  +R  +SLEEV  + S   SN
Sbjct: 573 AWKLRDADTIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTQVSLEEVPEFVSSLLSN 630


>gi|317030877|ref|XP_001392403.2| prolyl-tRNA synthetase [Aspergillus niger CBS 513.88]
          Length = 576

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 19/240 (7%)

Query: 2   RRSKYFLPI--LQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P   + + P   E   ++ L++R G + Q   GI+  LPLG +  D +  +I 
Sbjct: 9   RVSNFWIPTGGITKKPVQGEKEDANDLLIRGGFLRQAYSGIFHMLPLGLRVQDKLERLI- 67

Query: 59  EEQNRT-------------GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           ++  RT             GA ++S+ +L + +LW +SGR    G E+ R  DR +   +
Sbjct: 68  DKHMRTVVIEFFLIGWISAGASKVSLSSLSAQELWEQSGRLKE-GSEIFRFQDRKESRFL 126

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             PTHEE +T +     KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD 
Sbjct: 127 LAPTHEEEITTLVGHLTKSYRDLPVRVYQISRKYRDEQRPRQGLLRGREFIMKDLYTFDY 186

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
             E +  +Y  +  +Y  +F  L +  +   A+SG +GG LSHEF   ++ GE  V  CS
Sbjct: 187 NAENALKTYTAVKKAYTELFDELKIPYLVAAADSGNMGGSLSHEFHFASNKGEDTVXSCS 246



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 9/135 (6%)

Query: 308 KDHYV--QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           KD  V  QMG +GIG  R+++AV ++  D KG+ WP ++AP+++ ++  K  ++      
Sbjct: 438 KDQLVPMQMGCHGIGVSRMISAVADNLADSKGLNWPRAIAPYEVIVVPAKGMEE----EA 493

Query: 366 EKIYARLSK---VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            +IY  L+       DV  DD  +Q+G +   ADL+G+P+ V+VG  +     +E++ R 
Sbjct: 494 VQIYDALTSEPTTALDVILDDRDKQMGWKLGDADLIGYPVIVVVGKGWKKQRTLEVQCRR 553

Query: 423 TGIREDMSLEEVINY 437
             +RED++LE +  +
Sbjct: 554 LEVREDVALEALPEF 568


>gi|14970558|emb|CAC44360.1| ProS protein [Erwinia chrysanthemi]
          Length = 224

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 110/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +G DG++  + MG 
Sbjct: 36  VADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQGEDGRNQTLTMGC 95

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H     ++  E IY +L   
Sbjct: 96  YGIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVQEVAEGIYQQLRAN 155

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E KHR  G +E +   +++
Sbjct: 156 GVDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIEYKHRRKGEKEMIKAGDIV 215

Query: 436 NY 437
            +
Sbjct: 216 EF 217


>gi|171688027|ref|XP_001908954.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943975|emb|CAP69627.1| unnamed protein product [Podospora anserina S mat+]
          Length = 577

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII-REE 60
           R S+ + P  ++ P       H  ++R G +     GI+  LPLG++    +  ++ R  
Sbjct: 8   RLSRVWFPT-KKRPASGVENGHAKLIRAGFLRPSHAGIFHMLPLGRRVQTKLEELVARHM 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           ++   A  +S+  + S  LW +SGR ++   E+ + +DR +   +  PTHEE +T +   
Sbjct: 67  EHMLAASRVSLSAVSSQSLWDKSGRLENTASELFKFSDRKNVGYLLAPTHEEEITALVAQ 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             K+ ++LP   +QI  K+RDE RPR G++R REF+MKD Y+FD + E +  +Y+ + + 
Sbjct: 127 TAKTAKDLPLRLFQITPKYRDEFRPRHGLLRGREFVMKDLYTFDSSKESALETYDNVRLV 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y +IF  + L  +  +A SG +GG+LSHE+ +    GE  V 
Sbjct: 187 YSQIFEEMKLPVLAAKASSGNMGGNLSHEYHLPTPLGEDHVI 228



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 11/165 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV--QMGSYGIGAMRVVAAVIESSHDG 335
           + + +E+GH FY GT+YS  + AT    + +   V  QMG YGIG  R++ AV E   D 
Sbjct: 405 AEKAMELGHTFYLGTRYSEALGATILVPNDERKAVPMQMGCYGIGISRILGAVAELLMDE 464

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG------CDVFWDDMGEQIG 389
           KG+ WP ++AP+   ++     D+  +DA E +Y +++++G       DV  DD  + + 
Sbjct: 465 KGLNWPVAIAPYSCVIVMGAGVDE--QDAVE-VYRQINQIGRVQAKYLDVVLDDRQKTLP 521

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +   ADL GFP+ V +G ++++  ++E++ R  G+++ + + E+
Sbjct: 522 WKLMDADLAGFPIIVTLGREWLAAKRLEVQCRRLGVKQAVGITEL 566


>gi|258620049|ref|ZP_05715089.1| prolyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|258587782|gb|EEW12491.1| prolyl-tRNA synthetase [Vibrio mimicus VM573]
          Length = 459

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 107/165 (64%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GT YS  M+     ++GK+  ++MG YGIG  RVVAA IE +HD  GII
Sbjct: 295 RGIEVGHIFQLGTNYSAKMNCGVLDSNGKNAILEMGCYGIGVSRVVAAAIEQNHDDYGII 354

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WPD++APF+++++ +  H  +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+
Sbjct: 355 WPDAIAPFQVAIVPMNMHKSERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELI 414

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  VI+G + + +   E K+R  G +E +++E +I++   + +
Sbjct: 415 GVPHTVIIGDRSMDEGHFEYKNRRNGEKEAVAMESIIDFIQAKLA 459



 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 79/114 (69%)

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           ++T + R+ + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + 
Sbjct: 1   MITALVRNEVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQK 60

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           SY+ M  +Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +  S +
Sbjct: 61  SYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVFSTE 114


>gi|296816643|ref|XP_002848658.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238839111|gb|EEQ28773.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 589

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 3/203 (1%)

Query: 26  MLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +LR G + ++    G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +S
Sbjct: 22  ILRAGCLQKYHPYSGVFHLLPLGLRVQEKLERLIDKHMRKLNASKLSLSSLSSQSLWKKS 81

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR      E+ RL DR    ++  PTHEE +T +  S +KSYR+LP   YQI  K+RDE 
Sbjct: 82  GRLHEGDSEVFRLLDRKKTPLLLAPTHEEEITTVISSLVKSYRDLPLRVYQISRKYRDEP 141

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR G++R REF+MKD Y+FD T   + ++YN +  +Y+ +F  L L  +   A SG +G
Sbjct: 142 RPRHGLLRGREFVMKDLYTFDSTEAEAINTYNTVKDAYMELFEELKLPFVVASAASGNMG 201

Query: 204 GDLSHEFIVLADTGE-TQVFCSK 225
           G+LSHEF   +  GE T V CS+
Sbjct: 202 GNLSHEFHFPSSKGEDTIVSCSQ 224



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATF--------KGADGKDHYV--QMGSYGIGAMRVVAAVI 329
           + IE+ H F+ GT+YS  + A          +G  GK   V  QMG +GIG  R+++AV 
Sbjct: 413 QAIELAHTFHLGTRYSGVLQANVAINPATLEEGQQGKTELVPIQMGCHGIGVSRMISAVS 472

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +   D KG+ WP ++APF+++++  K  ++      + +  +  +   D   DD  +   
Sbjct: 473 DILADNKGLNWPQAIAPFQVAVVPAKGLEKEAELVYDSVAGQNGET-VDTILDDRNKDFI 531

Query: 390 SQFAVADLLGFPLQVIVGSK-FVSDSKVEIKHR-LTGIREDMSLEEVINYASHRFS 443
            +   ADL+G+P+ + VG K + + ++VE++ R L  +R  +SLEE+    S   S
Sbjct: 532 WKLRDADLVGYPIILAVGKKSWNAGNQVEVQCRQLENLRTTVSLEEIPKLVSSLLS 587


>gi|255940600|ref|XP_002561069.1| Pc16g07440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585692|emb|CAP93414.1| Pc16g07440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 630

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 132/227 (58%), Gaps = 5/227 (2%)

Query: 2   RRSKYFLPI--LQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S  ++P   + + P D E   ++ L++R G + Q   G++  LPLG +  D +  +I 
Sbjct: 35  RVSNIWIPTGGISKKPVDGEKEDANDLLVRAGFLRQAYSGVFHLLPLGLRVQDKLEHLID 94

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +  +  GA ++S+ ++ S +LW +SGR  + G E+ R  DR     +  PTHEE +T + 
Sbjct: 95  KHMSSLGASKVSLSSISSQELWKQSGRL-TDGSELFRFNDRKGTPFLLAPTHEEEITTLV 153

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                SY++LP   YQI  K+RDE RPR G++R REF+MKD Y+FD + + +  +Y+ + 
Sbjct: 154 GHLTTSYKSLPLRVYQISRKYRDEARPRQGLLRGREFIMKDLYTFDYSVDEALKTYDAVK 213

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CS 224
            +Y  +F+ L +  +   A+SG +GG LSHE+  ++  GE +V  CS
Sbjct: 214 SAYTELFNELKIPYLVAAADSGNMGGSLSHEYHFISPKGEDEVVSCS 260



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 23/190 (12%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--------------GADG 307
           VH+             S   +E+GH F+ GT+YS  ++A+                 +  
Sbjct: 432 VHDGDRCSQCAHGSLTSHSAVELGHTFHLGTRYSKVLNASVSVNSALLEGSSELDAKSSA 491

Query: 308 KDHYV--QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           K+  V  QMG +GIG  R+++AV     D KG+ WP ++AP+++ +++ K  + V     
Sbjct: 492 KEQIVPMQMGCHGIGVSRMISAVANRLADSKGLNWPRAMAPYEVVVVSGKGLETV----A 547

Query: 366 EKIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +++Y  L+       DV  DD  + +G +   ADL+G+P+ V+VG+ +     +E++ R 
Sbjct: 548 DQVYDSLTGGAAASLDVILDDRDKGMGWKLGDADLIGYPIIVVVGNGWKKKETLEVQCRR 607

Query: 423 TGIREDMSLE 432
             ++ED+SL+
Sbjct: 608 LDVKEDVSLD 617


>gi|315049859|ref|XP_003174304.1| prolyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311342271|gb|EFR01474.1| prolyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 631

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 121/207 (58%), Gaps = 1/207 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           + S+ L++R G + Q   G++  LPLG +  + +  +I +   +  A ++S+ +L S  L
Sbjct: 59  VDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDKHMRKLSASKLSLSSLSSQAL 118

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W +SGR  +   E+ R  DR     +  PTHEE +T +    IKSYR+LP   YQI  K+
Sbjct: 119 WKKSGRLHNDDSEVFRFVDRKKTPFLLAPTHEEEITTLVSGLIKSYRDLPLRVYQISRKY 178

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++R REF+MKD Y+FD T   +  +YN +  +Y+ +F  L +  +   A S
Sbjct: 179 RDEPRPRHGLLRGREFVMKDLYTFDSTEGEAIKTYNTVKDAYISLFKELKIPYVVASASS 238

Query: 200 GPIGGDLSHEFIVLADTGE-TQVFCSK 225
           G +GG+LSHEF   +  GE T V CSK
Sbjct: 239 GNMGGNLSHEFHFPSPKGEDTVVSCSK 265



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 14/177 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK---------GADGKDHYV--QMGSYGIGAMRVVAAV 328
           + IE+ H F+ GT+YS  + A            G  GK   V  QMG +GIG  R+++AV
Sbjct: 454 QSIELAHTFHLGTRYSDVLQANVSINPAILANAGQKGKQEPVPIQMGCHGIGVSRMISAV 513

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   D KG+ WP ++APF+++++  K  ++   +    +  R ++   D   DD  +  
Sbjct: 514 SDILADEKGLNWPQAIAPFQVAVVPGKGLEKEA-ELVYDVVTRNTQQPIDTILDDRKKDF 572

Query: 389 GSQFAVADLLGFPLQVIVG-SKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFS 443
             +   ADL+G+P+ + VG + + + +KVE++  RL  +R  +SLEEV    S   S
Sbjct: 573 AWKLRDADLIGYPVILAVGKNSWSAGNKVEVQCRRLGNLRTKISLEEVPELVSSLLS 629


>gi|145608824|ref|XP_369830.2| hypothetical protein MGG_06345 [Magnaporthe oryzae 70-15]
 gi|145016254|gb|EDK00744.1| hypothetical protein MGG_06345 [Magnaporthe oryzae 70-15]
          Length = 617

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 115/205 (56%), Gaps = 20/205 (9%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +H+ ++R G + Q + GI+  +PLG +  D +  +I +     GA  +++ TL S  +W 
Sbjct: 42  AHEKLVRAGYLRQANAGIFHLMPLGYRVQDKIMKLIEKHMQSIGASRLALATLSSPGIWA 101

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +SGR++              KAM      EE +T + +  + SY+ LP   YQI  KFRD
Sbjct: 102 KSGRFE--------------KAMT-----EEEITTLVKHTLSSYKQLPARLYQITPKFRD 142

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR G++R REF+MKD Y+FDL+   +  +Y ++  +Y RIF  L L  +   A SG 
Sbjct: 143 EMRPRKGLLRGREFMMKDLYTFDLSVNTALQTYEQVRAAYDRIFSELRLPVMVAEASSGD 202

Query: 202 IGGDLSHEFIVLADTGETQVF-CSK 225
           IGGDLSHE+ +    GE  V  CS+
Sbjct: 203 IGGDLSHEYHLPTSEGEDDVISCSR 227



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 39/189 (20%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK------GADGKDHY-------------------VQM 314
           +  E+GH F+ G +YS PM  T K         G +                     VQM
Sbjct: 423 KATELGHTFHLGDRYSEPMGLTVKLPNTSQAESGSNTVSDEEGQIYSFSSKRQGEVNVQM 482

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R++AAV E   D +G+ WP ++AP+++++I   +      DA E IY  LS+
Sbjct: 483 GCHGIGVSRIIAAVAEHFGDSRGLNWPRAIAPYEVAIITKNS----LGDA-ESIYDLLSE 537

Query: 375 VGC---------DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            G          D+  DD  + +  +   ADL+G+P+ V++G  +V   + E++ R    
Sbjct: 538 GGAIATPAFPKPDLVLDDRDKTLPWKLKDADLVGYPVVVVLGKAWVESKQCEVQCRQLSF 597

Query: 426 REDMSLEEV 434
           +E ++L+ +
Sbjct: 598 KELVALDNL 606


>gi|327293800|ref|XP_003231596.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466224|gb|EGD91677.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 631

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +++P          + S+ L++R G + Q   G++  LPLG +  + +  +I +  
Sbjct: 41  RASSFWIPSGGIAESKNGVDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDKYM 100

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  A ++S+ +L S  LW +SGR      E+ R  DR     +  PTHEE +T +    
Sbjct: 101 RKLSASKLSLSSLSSQALWKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVSGL 160

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  +Y
Sbjct: 161 IKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKEAY 220

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
             +F  L L  +   A SG +GG+LSHEF   +  GE T V CSK
Sbjct: 221 SSLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKGEDTIVSCSK 265



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 14/177 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK---------GADGKDHYV--QMGSYGIGAMRVVAAV 328
           + IE+ H F+ GT+YS  + A            G  GK   V  QMG +GIG  R+++AV
Sbjct: 454 QSIELAHTFHLGTRYSEVLQANVTINPAILAGAGQKGKPEPVPIQMGCHGIGVSRMISAV 513

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   D KG+ WP ++APF++ ++  K  ++   +    I  + +K   D   DD  +  
Sbjct: 514 SDILADEKGLNWPQAIAPFQVVVVPGKGLEKEG-ELVYDIVTQKTKQPIDTILDDRKKDF 572

Query: 389 GSQFAVADLLGFPLQVIVG-SKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFS 443
             +   AD++G+P+ + VG + + + +KVE++  RL  +R  +SLEEV  + S   S
Sbjct: 573 AWKLRDADIIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKVSLEEVPEFVSSLLS 629


>gi|307069651|ref|YP_003878128.1| putative prolyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
 gi|306482911|gb|ADM89782.1| putative prolyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
          Length = 553

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 127/224 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K+F+  L++   +    + K++ + GMI + S GIY+++P+    L  + +II  E
Sbjct: 1   MLAKKFFIFTLKKILSNINNKTLKIINKIGMIKKISSGIYTYMPILLLILKKIKSIINYE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+ +P +Q +++W ++ R+     E+L+  +R  K  +  PT EE++T I + 
Sbjct: 61  MKKNNITEILMPIIQPSNIWKKTKRWYKMKNELLKFKNRKKKYFVMQPTSEELITYIIKK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + +Y+ LP  FY IQ KFRDELR + G++R +EF+MKDAYSFD++ + S  +Y  M   
Sbjct: 121 ELLNYKQLPLIFYNIQNKFRDELRCKSGLIRLKEFIMKDAYSFDISFKNSIKNYKLMLNI 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+++ LK   ++  +  +   +SHEF ++         CS
Sbjct: 181 YKNIFNKINLKFKILKTNNKNMEWIISHEFHIITKNSNNYFLCS 224



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + IE+ HIF  G  YS  +++ +   + K  +  MGSYGIG  R++  +IE + D  GI
Sbjct: 387 KKSIEIAHIFLLGKFYSRLINSKYINYNNKKKFFFMGSYGIGISRLLQIIIEKNIDKIGI 446

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP+++ PF + +  IK ++ + +     IY +L  +  ++  D+    IG      +L+
Sbjct: 447 KWPNNLIPFNLVICFIKNNNYI-KKISYFIYYKLLLLNINLIIDNRNINIGYMLNDWELI 505

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASHRFS 443
           G P  +IVG+ F+  + +  K R    I +++++ ++  +  ++ +
Sbjct: 506 GIPNYIIVGN-FIKKNIISYKVRKKKNIYKNININKIFKFIFNKIN 550


>gi|241958042|ref|XP_002421740.1| prolyl-tRNA synthetase, cytoplasmic, putative [Candida dubliniensis
           CD36]
 gi|223645085|emb|CAX39680.1| prolyl-tRNA synthetase, cytoplasmic, putative [Candida dubliniensis
           CD36]
          Length = 567

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 120/208 (57%), Gaps = 5/208 (2%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+++ + G I     G+ +W  +G    + +N IIR+  +     E+S+  +   D
Sbjct: 29  QIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKINQIIRQRMDEINFEEISLSLISHKD 88

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  + R+D   +E+ +L    D+ ++     EE+   + +  ++SY+N P   YQI  K
Sbjct: 89  LWKLTNRWDQ--EEIFKLV--GDEYLLVPTAEEEITNYVKKQFLESYKNFPVGLYQINPK 144

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +IF  LG+  +   A+
Sbjct: 145 FRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEAD 204

Query: 199 SGPIGGDLSHEFIVLADTGETQVF-CSK 225
           SG IGG LSHE+  L  +GE  VF C++
Sbjct: 205 SGDIGGSLSHEWHYLNSSGEDTVFECNE 232



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 79/143 (55%), Gaps = 10/143 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           ++  IEVGH FY G KYS P+           + +   + MG YGIG  R++AA+ E + 
Sbjct: 365 ASSAIEVGHTFYLGDKYSKPLDLEVDVPTLNNNIEKQRIMMGCYGIGISRIIAAIAEINR 424

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRD------ACEKIYARLSKVGCDVFWDDMGEQ 387
           D KG+ WP S+AP++++++ +    Q   D        +++Y  L++   D   D+  + 
Sbjct: 425 DEKGLKWPRSIAPWEVTIVEVSQQKQSTNDNDNPQENFKEVYNILNEANIDYRLDNRSDS 484

Query: 388 IGSQFAVADLLGFPLQVIVGSKF 410
           +G +   ++L+G PL +I+G+++
Sbjct: 485 MGKKLKQSNLIGIPLSIILGNQY 507


>gi|145640808|ref|ZP_01796390.1| prolyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274322|gb|EDK14186.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 430

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M AT +G DGK   + MG YGIG  RVVA+ IE  HD +GII
Sbjct: 263 RGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGII 322

Query: 340 WP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           WP D +APF ++++ +  H  +  +   E++Y  L   G DV +DD  E+ G  FA  +L
Sbjct: 323 WPSDEIAPFTVAIVPMNMHKSESVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMEL 382

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P  VI+G K + + ++E K+R TG +E +S +++++  + +  N
Sbjct: 383 IGVPHMVIIGEKNLDNGEIEYKNRRTGEKEMISKDQLLSVLNEKLGN 429



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 59/84 (70%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  Y  IF+RLGL    ++A++G I
Sbjct: 1   MRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQVYSNIFNRLGLDFRAVQADTGSI 60

Query: 203 GGDLSHEFIVLADTGETQVFCSKD 226
           GG  SHEF VLA +GE  V  S +
Sbjct: 61  GGSASHEFQVLASSGEDDVVFSTE 84


>gi|302657268|ref|XP_003020359.1| hypothetical protein TRV_05552 [Trichophyton verrucosum HKI 0517]
 gi|291184187|gb|EFE39741.1| hypothetical protein TRV_05552 [Trichophyton verrucosum HKI 0517]
          Length = 581

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 113/197 (57%), Gaps = 1/197 (0%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G+    + G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +SGR    
Sbjct: 19  GIAESKNGGVFHLLPLGLRVQEKLERLIDKHMRKLNASKLSLSSLSSQALWKKSGRLHDD 78

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             E+ R  DR     +  PTHEE +T +    IKSYR+LP   YQI  K+RDE RPR G+
Sbjct: 79  DSEVFRFVDRKKTPFLLAPTHEEEITTVVSGLIKSYRDLPLRVYQISRKYRDEPRPRHGL 138

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R REF+MKD Y+FD T   +  +YN +  +Y+ +F  L L  +   A SG +GG+LSHE
Sbjct: 139 LRGREFVMKDLYTFDSTEAEAIKTYNTVKEAYISLFKELKLPYVVASASSGNMGGNLSHE 198

Query: 210 FIVLADTGE-TQVFCSK 225
           F   +  GE T V CSK
Sbjct: 199 FHFPSPKGEDTIVSCSK 215



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 14/178 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK---------GADGKDHYV--QMGSYGIGAMRVVAAV 328
           + IE+ H F+ GT+YS  + A            G  GK   V  QMG +GIG  R+++AV
Sbjct: 404 QSIELAHTFHLGTRYSEVLQANVSINPAILAGAGQKGKQEPVPIQMGCHGIGVSRMISAV 463

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   D KG+ WP ++APF+++++  K  ++   +    I  + ++   D   DD  +  
Sbjct: 464 SDILADEKGLNWPQAIAPFQVAVVPGKGLEKEG-ELVYDIVTQTTQQPIDTILDDRKKDF 522

Query: 389 GSQFAVADLLGFPLQVIVG-SKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFSN 444
             +   AD++G+P+ + VG + + + +KVE++  RL  +R  +SLEEV    S   S 
Sbjct: 523 AWKLRDADMIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKVSLEEVPELVSSLLSQ 580


>gi|222873081|gb|EEF10212.1| predicted protein [Populus trichocarpa]
          Length = 264

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+     A  RGIEVGH+FY GTKYS  M+ATF   +GK    +MG 
Sbjct: 30  VADLRNVVAGDKSPDGAGELAIERGIEVGHVFYLGTKYSQAMNATFLAENGKPSLFEMGC 89

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  ++A EK++A L  +
Sbjct: 90  YGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVVCPIGMDRSEPVKEAAEKLHAELLAL 149

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + +VE +HR       M+  +V+
Sbjct: 150 GVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGLKEGQVEYQHRRDTEATKMAAADVL 209

Query: 436 NYASHRFS 443
            +   R  
Sbjct: 210 GHLKQRLG 217


>gi|134076914|emb|CAK45323.1| unnamed protein product [Aspergillus niger]
          Length = 497

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 106/183 (57%), Gaps = 2/183 (1%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LPLG +  D +  +I +     GA ++S+ +L + +LW +SGR    G E+ R  DR + 
Sbjct: 2   LPLGLRVQDKLERLIDKHMRTVGASKVSLSSLSAQELWEQSGRLKE-GSEIFRFQDRKES 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
             +  PTHEE +T +     KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+
Sbjct: 61  RFLLAPTHEEEITTLVGHLTKSYRDLPVRVYQISRKYRDEQRPRQGLLRGREFIMKDLYT 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           FD   E +  +Y  +  +Y  +F  L +  +   A+SG +GG LSHEF   ++ GE  V 
Sbjct: 121 FDYNAENALKTYTAVKKAYTELFDELKIPYLVAAADSGNMGGSLSHEFHFASNKGEDTVX 180

Query: 223 -CS 224
            CS
Sbjct: 181 SCS 183



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 9/135 (6%)

Query: 308 KDHYV--QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           KD  V  QMG +GIG  R+++AV ++  D KG+ WP ++AP+++ ++  K  ++      
Sbjct: 359 KDQLVPMQMGCHGIGVSRMISAVADNLADSKGLNWPRAIAPYEVIVVPAKGMEE----EA 414

Query: 366 EKIYARLSK---VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            +IY  L+       DV  DD  +Q+G +   ADL+G+P+ V+VG  +     +E++ R 
Sbjct: 415 VQIYDALTSEPTTALDVILDDRDKQMGWKLGDADLIGYPVIVVVGKGWKKQRTLEVQCRR 474

Query: 423 TGIREDMSLEEVINY 437
             +RED++LE +  +
Sbjct: 475 LEVREDVALEALPEF 489


>gi|327357537|gb|EGE86394.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 601

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 135/249 (54%), Gaps = 19/249 (7%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L+++ G + Q   G++  LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SG
Sbjct: 30  LLIQGGFLRQAYSGVFHMLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSG 89

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R      E  +  DR +   +  PTHEE +T +    + SYR+LP   YQI  K+RDE R
Sbjct: 90  RLKK-DSEFFKFQDRKEARFLLAPTHEEEITSLVAGAVNSYRDLPLRVYQISRKYRDEPR 148

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKD Y+FD +PE +  +Y+ +  +Y+R+F  L +  +   A+SG +GG
Sbjct: 149 PRQGLLRGREFIMKDLYTFDYSPETAIKTYSAVKKAYIRLFDELRIPYMIATADSGNMGG 208

Query: 205 DLSHEFIVLADTGE-TQVFCS-------------KDFMDFPIPSENTDFDDIISLNSIVE 250
            LSHEF +    GE T + CS             K + D   P  N + D    L++ +E
Sbjct: 209 SLSHEFHLPNPKGEDTIISCSSCGNVYNEELSDGKAYEDL-TPPANPNLD---KLSAGLE 264

Query: 251 QWTAPYAAT 259
           +  AP  +T
Sbjct: 265 EQQAPAIST 273



 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 98/171 (57%), Gaps = 21/171 (12%)

Query: 281 GIEVGHIFYFGTKYS--------LPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAA 327
            IE+ H F+ GT+YS        +P++    G+   D       ++MG +GIG  R+++A
Sbjct: 424 AIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPLEMGCHGIGVSRMISA 483

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--KVGC-DVFWDDM 384
           V ++  D KG+ WP ++APF++ +I     D+      E++Y  ++  ++G  DV  DD 
Sbjct: 484 VADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDINGRQIGAVDVIVDDR 539

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
              I  +   ADL+G+P+ +++G  + +++K+E++  RL  +RE +SL+++
Sbjct: 540 DRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRETVSLQDL 590


>gi|150866832|ref|XP_001386559.2| prolyl-tRNA synthetase, cytoplasmic [Scheffersomyces stipitis CBS
           6054]
 gi|149388088|gb|ABN68530.2| prolyl-tRNA synthetase, cytoplasmic [Scheffersomyces stipitis CBS
           6054]
          Length = 572

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 119/203 (58%), Gaps = 4/203 (1%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           + +H+L+++  +I+Q   G+ +W P+G   ++ ++ IIR   +     E+ +  L     
Sbjct: 29  LPTHELLVQLNLINQPRAGLVNWSPIGLTIMNKISDIIRRRMDEISFEEVKLSLLSHHSS 88

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W ++GR+D+   E+ +L     +  I  PT EE + +   ++  SY+NLP  +YQI  KF
Sbjct: 89  WRKTGRWDN-SSELFKLKG---EEYILSPTAEEDIVNYVSNNSSSYKNLPLLYYQINPKF 144

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R+E RPR G++R +EF+MKDAYSFD + + +  +Y  +  +Y +IF  L L      A+S
Sbjct: 145 RNEKRPRGGLLRGKEFMMKDAYSFDASEKDAMTTYQSVIGAYTKIFGDLKLPYTKAEADS 204

Query: 200 GPIGGDLSHEFIVLADTGETQVF 222
           G IGG LSHE+  + DTGE  ++
Sbjct: 205 GDIGGSLSHEWHYIDDTGEDIIY 227



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 29/196 (14%)

Query: 226 DFMDFPIPSEN----TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           +F DFPI   N    T F DI  +++I                 +L     E    S + 
Sbjct: 331 NFPDFPISFINRSLITTFTDIPIISAI---------------EGELCGKCEEGHLHSNKA 375

Query: 282 IEVGHIFYFGTKYSLPMSATF------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           IEVGH FY G KYS P+  +       KG   + + + MG YGIG  R++A++ E + D 
Sbjct: 376 IEVGHTFYLGDKYSKPLDCSMDFPVNEKGQVERRNLI-MGCYGIGVSRIIASIGEINRDD 434

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           KG+ WP S+AP+ +++  I+       ++ E  Y  L+    D   D+  +  +G +   
Sbjct: 435 KGLNWPQSIAPWTMTI--IEGAKSESGESYESFYNTLNDNSVDYRLDNRAKIGLGKKINQ 492

Query: 395 ADLLGFPLQVIVGSKF 410
           ++LLG PL VI+G ++
Sbjct: 493 SNLLGIPLAVILGKQY 508


>gi|223041833|ref|ZP_03612022.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
 gi|223017360|gb|EEF15782.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 263

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 111/184 (60%), Gaps = 4/184 (2%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   + MG YG
Sbjct: 76  DLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLIMTMGCYG 135

Query: 319 IGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           IG  RVVAA IE  HD +GIIWP D +APF ++++ +  H  +  +   E++Y  L   G
Sbjct: 136 IGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSEKVQAFAEELYKTLKAQG 195

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG ++ ++ E+++ 
Sbjct: 196 VDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRTGEKQMIAKEQLLA 255

Query: 437 YASH 440
           + + 
Sbjct: 256 FLAE 259


>gi|145640807|ref|ZP_01796389.1| prolyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274321|gb|EDK14185.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 125

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 82/116 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITD 116


>gi|229019013|ref|ZP_04175855.1| Prolyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228742341|gb|EEL92499.1| Prolyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 445

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G+
Sbjct: 282 ARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFNDENGL 341

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL 
Sbjct: 342 VWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLF 401

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++
Sbjct: 402 GLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIAN 442



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +Y
Sbjct: 1   MKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKAY 60

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
             IF R GL    + A+SG +GG  +HEF+VL++ GE  +
Sbjct: 61  SNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTI 100


>gi|217031454|ref|ZP_03436959.1| hypothetical protein HPB128_21g12 [Helicobacter pylori B128]
 gi|216946654|gb|EEC25250.1| hypothetical protein HPB128_21g12 [Helicobacter pylori B128]
          Length = 517

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 95/162 (58%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GA  + +  +  A LW +SGR D YGKE+L   DR +   +  PT EE +T+I  + IKS
Sbjct: 5   GAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKNNDFVLSPTLEENITEIAANFIKS 64

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +Y  I
Sbjct: 65  YKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSAYKEI 124

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
              LGL    + A+SG IGG  S EF+VL + GE  +   K+
Sbjct: 125 LSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKN 166



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 352 KSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCV 411

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 412 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 471

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEVI 435
             L +IVG + + + + E   R    ++   D+ LEE I
Sbjct: 472 ERLALIVGKQTLENKEFECVKRANLEKQTIKDIELEEKI 510


>gi|2501044|sp|P78600|SYPC_CANAL RecName: Full=Prolyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|1845347|gb|AAC49876.1| prolyl-tRNA synthetase [Candida albicans]
          Length = 575

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 120/208 (57%), Gaps = 5/208 (2%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +     E+S+  +   +
Sbjct: 29  QIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEIQFEEVSLSLISHKE 88

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  + R+D   +E+ +L    D+ ++     EE+   + +  ++SY+N P   YQI  K
Sbjct: 89  LWKLTNRWDQ--EEIFKLV--GDEYLLVPTAEEEITNYVKKQFLESYKNFPLALYQINPK 144

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +IF  LG+  +   A+
Sbjct: 145 FRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEAD 204

Query: 199 SGPIGGDLSHEFIVLADTGETQVF-CSK 225
           SG IGG LSHE+  L  +GE  VF C++
Sbjct: 205 SGDIGGSLSHEWHYLNSSGEDTVFECNE 232



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 15/153 (9%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD----HYVQMGSYGIGAMRVVAAV 328
           E K  ++  IEVGH FY G KYS P+          +      + MG YGIG  R++AA+
Sbjct: 360 EGKLSASSAIEVGHTFYLGDKYSKPLDLEVDVPTSNNSIEKQRIMMGCYGIGISRIIAAI 419

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQV-----------CRDACEKIYARLSKVGC 377
            E + D KG+ WP S+AP++++++ +    Q+            +D  ++IY  L++   
Sbjct: 420 AEINRDEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYNILNQANI 479

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           D   D+  + +G +   +DLLG PL +I+G+++
Sbjct: 480 DYRLDNRSDSMGKKLKQSDLLGIPLSIILGNQY 512


>gi|77409695|ref|ZP_00786360.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77171693|gb|EAO74897.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 549

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 90/146 (61%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           M  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY+ L
Sbjct: 1   MLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRDAVKSYKQL 60

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +Y  IF R 
Sbjct: 61  PLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKAYEAIFTRA 120

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLA 214
           GL    +  + G +GG  S EF+ + 
Sbjct: 121 GLDFKGIIGDGGAMGGKDSQEFMAVT 146



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------- 331
           ARGIE+GHIF  GT+YS  M A     +G+ + + MG YGIG  R+++AVIE        
Sbjct: 372 ARGIEIGHIFKLGTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVN 431

Query: 332 -SHDGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            +  G      GI +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  
Sbjct: 432 KTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRN 491

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++GS+F+ +DL+G P++V VG K  S+  VE+K + +G
Sbjct: 492 ERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVKIKASG 529


>gi|238879629|gb|EEQ43267.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 575

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 120/208 (57%), Gaps = 5/208 (2%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +     E+S+  +   +
Sbjct: 29  QIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEIQFEEVSLSLISHKE 88

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  + R+D   +E+ +L    D+ ++     EE+   + +  ++SY+N P   YQI  K
Sbjct: 89  LWKLTNRWDQ--EEIFKLV--GDEYLLVPTAEEEITNYVKKQFLESYKNFPLALYQINPK 144

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +IF  LG+  +   A+
Sbjct: 145 FRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEAD 204

Query: 199 SGPIGGDLSHEFIVLADTGETQVF-CSK 225
           SG IGG LSHE+  L  +GE  VF C++
Sbjct: 205 SGDIGGSLSHEWHYLNSSGEDTVFECNE 232



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 15/148 (10%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATF----KGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           ++  IEVGH FY G KYS P+             +   + MG YGIG  R++AA+ E + 
Sbjct: 365 ASSAIEVGHTFYLGDKYSKPLDLEVDVPTSNKSIEKQRIMMGCYGIGISRIIAAIAEINR 424

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQV-----------CRDACEKIYARLSKVGCDVFWD 382
           D KG+ WP S+AP++++++ +    Q+            +D  ++IY  L++   D   D
Sbjct: 425 DEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYNILNQANIDYRLD 484

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  + +G +   +DLLG PL +I+G+++
Sbjct: 485 NRSDSMGKKLKQSDLLGIPLSIILGNQY 512


>gi|322657153|gb|EFY53436.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322686288|gb|EFY82272.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
          Length = 290

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 102 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 161

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 162 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 221

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 222 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 281

Query: 436 NY 437
           +Y
Sbjct: 282 DY 283


>gi|289830169|ref|ZP_06547591.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 290

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 102 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 161

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 162 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 221

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 222 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 281

Query: 436 NY 437
           +Y
Sbjct: 282 DY 283


>gi|189189606|ref|XP_001931142.1| prolyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972748|gb|EDU40247.1| prolyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 488

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
           + +  +I +  N  GA ++S+ ++ +  LW +SGRY S   E+LR+ DR +   +  PTH
Sbjct: 11  NKLEGLIDKHMNSIGASKVSLSSITTEALWRQSGRY-SANSELLRIKDRRETGFLLSPTH 69

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           EE +T +  S + SY++LP   YQI  K+RDE RPR G++R++EF+MKD Y+FD +P+ +
Sbjct: 70  EEEITALVASMVHSYKDLPLRLYQIGRKYRDERRPRGGLLRAKEFMMKDLYTFDSSPKAA 129

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +Y  +  +Y  +F+ L L  +   A+SG +GG LSHE+   +  GE  +F  +
Sbjct: 130 LETYESVRDAYNNLFNELKLPYLVADADSGNMGGKLSHEYHFASPKGEDYIFSCQ 184



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 7/187 (3%)

Query: 254 APYAATSDVHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-D 309
           AP   + D+   K  D  P     K    + IEVGH F+ GT+YS+P++A     D    
Sbjct: 292 APSTCSIDITLTKPGDPCPRCATGKLNIQKAIEVGHTFHLGTRYSVPLNAVIALRDQNLS 351

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-ISLINIKAHDQVCRDACEKI 368
             V MG +GIG  R++ AV     D +G+ WP  +AP++ I L + K  ++   +  + +
Sbjct: 352 SPVHMGCHGIGVSRIIGAVASLLSDARGLNWPRVIAPYEAIVLSDPKTEEEDTTEVYDAL 411

Query: 369 YARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
                    D+  DD  G+ +G +   ADL+G+P+ V++G  +  D KVEI+ R  G+++
Sbjct: 412 RGEERNPDIDLVLDDRAGKSLGWKLKDADLIGYPVVVVLGRSW-KDKKVEIQCRRLGVKK 470

Query: 428 DMSLEEV 434
           D+ L+E+
Sbjct: 471 DVDLKEL 477


>gi|331233138|ref|XP_003329230.1| prolyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309308220|gb|EFP84811.1| prolyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 301

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 103/165 (62%), Gaps = 1/165 (0%)

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R GA E+S+P LQS  LW  SGR +  G E+ RL DR   +++  PTHEE +T++ +S 
Sbjct: 2   ERIGASEISMPLLQSQKLWDRSGRSNQAGPELFRLKDRKGSSLLLSPTHEEEVTNLVKSD 61

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+S + LP   + I  KFRDE RPR G++RSREF+MKD Y+FD     +  SY ++  +Y
Sbjct: 62  IQSGKQLPIKLFHIGRKFRDEARPRAGLLRSREFIMKDLYTFDADASAAMASYKEVQEAY 121

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSK 225
            RIF  +G+      A+SG IGG  SHE+   + +GE + + C++
Sbjct: 122 RRIFETIGIPFSVAEADSGAIGGATSHEYHYKSSSGEDSLIHCTR 166


>gi|213645917|ref|ZP_03375970.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 249

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 61  VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 120

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 121 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 180

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 181 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 240

Query: 436 NY 437
           +Y
Sbjct: 241 DY 242


>gi|213416593|ref|ZP_03349737.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 223

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 35  VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 94

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 95  YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 154

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 155 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 214

Query: 436 NY 437
           +Y
Sbjct: 215 DY 216


>gi|159131195|gb|EDP56308.1| prolyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 584

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 11/204 (5%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +++L++R G + Q   GI+  LPLG +  + +  +I +     GA ++S+ ++ S +LW 
Sbjct: 19  ANELLIRGGFLRQAYSGIFHMLPLGLRVQEKLERLIDKHMRSVGASKVSLSSISSQELWE 78

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +SGR          L + ++   +  PTHEE +T +  S  KSYR+LP   YQI  K+RD
Sbjct: 79  QSGR----------LKEGSESRFLLAPTHEEEITTLVGSLTKSYRDLPLRVYQISRKYRD 128

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E RPR G++R REFLMKD Y+FD + E +  +YN +  +Y  +F  L +  +   A+SG 
Sbjct: 129 EPRPRQGLLRGREFLMKDLYTFDYSVEEALKTYNLVKAAYKNLFDELKIPYLVAAADSGN 188

Query: 202 IGGDLSHEFIVLADTGE-TQVFCS 224
           +GG LSHEF   +  GE T + CS
Sbjct: 189 MGGSLSHEFHFPSSKGEDTVISCS 212



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 17/170 (10%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF-------KGADGKDHYV--QMGSYGIGAMRVVAAVIES 331
            +E+GH F+ GT+YS  + A+         G+  KD  V  QMG +GIG  R+++AV +S
Sbjct: 411 AVELGHTFHLGTRYSEVLQASVMVDRSLSGGSQSKDQLVPMQMGCHGIGVSRMISAVADS 470

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL---SKVGCDVFWDDMGEQI 388
             D KG+ WP ++AP+++ ++  +          EK+Y  L        D   DD  + +
Sbjct: 471 LSDSKGLNWPRAMAPYEVVVVPGRG----LETEAEKVYDSLVSNHTSSVDAILDDRDKPM 526

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINY 437
           G +   ADL+G+P+ V+VG  +     +E++  RL  +RED+ L+++ ++
Sbjct: 527 GWKLGDADLIGYPVIVVVGKGWKKAQTLEVQCRRLNNLREDVPLDQLPSF 576


>gi|70995366|ref|XP_752440.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66850075|gb|EAL90402.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
          Length = 584

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 11/204 (5%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +++L++R G + Q   GI+  LPLG +  + +  +I +     GA ++S+ ++ S +LW 
Sbjct: 19  ANELLIRGGFLRQAYSGIFHMLPLGLRVQEKLERLIDKHMRSVGASKVSLSSISSQELWE 78

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +SGR          L + ++   +  PTHEE +T +  S  KSYR+LP   YQI  K+RD
Sbjct: 79  QSGR----------LKEGSESRFLLAPTHEEEITTLVGSLTKSYRDLPLRVYQISRKYRD 128

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E RPR G++R REFLMKD Y+FD + E +  +YN +  +Y  +F  L +  +   A+SG 
Sbjct: 129 EPRPRQGLLRGREFLMKDLYTFDYSVEEALKTYNLVKAAYKNLFDELKIPYLVAAADSGN 188

Query: 202 IGGDLSHEFIVLADTGE-TQVFCS 224
           +GG LSHEF   +  GE T + CS
Sbjct: 189 MGGSLSHEFHFPSSKGEDTVISCS 212



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 17/170 (10%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF-------KGADGKDHYV--QMGSYGIGAMRVVAAVIES 331
            +E+GH F+ GT+YS  + A+         G+  KD  V  QMG +GIG  R+++AV +S
Sbjct: 411 AVELGHTFHLGTRYSEVLQASVMVDRSLSGGSQSKDQLVPMQMGCHGIGVSRMISAVADS 470

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL---SKVGCDVFWDDMGEQI 388
             D KG+ WP ++AP+++ ++  K          EK+Y  L        D   DD  + +
Sbjct: 471 LSDSKGLNWPRAMAPYEVVVVPGKG----LETEAEKVYDSLVSNHTSSVDAILDDRDKPM 526

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINY 437
           G +   ADL+G+P+ V+VG  +     +E++  RL  +RED+ L+++ ++
Sbjct: 527 GWKLGDADLIGYPVIVVVGKGWKKAQTLEVQCRRLNNLREDVPLDQLPSF 576


>gi|121701845|ref|XP_001269187.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119397330|gb|EAW07761.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 553

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 109/184 (59%), Gaps = 2/184 (1%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LPLG +  D +  +I +     GA ++S+ ++ S +LW +SGR    G E+ R  DR + 
Sbjct: 2   LPLGLRVQDKLERLIDKHMQSVGASKVSLSSISSQELWEQSGRLKE-GSEVFRFHDRKES 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
             +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+
Sbjct: 61  RFLLAPTHEEEITTLVGSLTKSYRDLPVRVYQISRKYRDEARPRQGLLRGREFMMKDLYT 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQV 221
           FD   E +  +YN +  +Y  +F  L +  +   A+SG +GG LSHEF   +  GE T +
Sbjct: 121 FDYNVEEALKTYNLVKAAYKNLFDELKIPYLVAAADSGNMGGSLSHEFHFPSSKGEDTVI 180

Query: 222 FCSK 225
            CS+
Sbjct: 181 SCSR 184



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 92/166 (55%), Gaps = 16/166 (9%)

Query: 281 GIEVGHIFYFGTKYSLPMSAT------FKGADGKDHYV--QMGSYGIGAMRVVAAVIESS 332
            +E+GH F+ GT+YS  + A+        G   KD  V  QMG +GIG  R+++AV ++ 
Sbjct: 381 AVELGHTFHLGTRYSEVLQASVMVDQSLSGGAAKDQQVPMQMGCHGIGVSRMISAVADNL 440

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC---DVFWDDMGEQIG 389
            D KG+ WP ++AP+++ ++  K          EK+Y  L+       D   DD  + +G
Sbjct: 441 ADSKGLNWPRAMAPYEVVVVPGKG----LETEAEKVYDLLASKQSSPIDTILDDREKPMG 496

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
            + + ADL+G+P+ ++VG  +     +E++  RL  +RE++ L+++
Sbjct: 497 WKLSDADLIGYPVIIVVGKGWKKQQTLEVQCRRLDNLREEVPLDQL 542


>gi|268567756|ref|XP_002647865.1| Hypothetical protein CBG23664 [Caenorhabditis briggsae]
 gi|187040879|emb|CAP20462.1| hypothetical protein CBG_23664 [Caenorhabditis briggsae AF16]
          Length = 265

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 102/166 (61%), Gaps = 3/166 (1%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +H++++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++ +P + +  LW 
Sbjct: 26  AHRMLIENGFILPTAKGFYSLLPLGQRVIDKLCRILDSEFQNSGAMKVGMPIVGTKQLWD 85

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR--SHIKSYRNLPFTFYQIQLKF 139
            + R+++ G EML+  DR    +   PT EE+ TD+    S +K    LP   YQI  KF
Sbjct: 86  RTRRWEAMGSEMLKFEDRQKAQLCLQPTAEEMCTDLIAQLSPLKK-SQLPVMLYQIGEKF 144

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           RDE+ PRFG+MR+R+FLMKD YSF L  E S+ +Y+ +   Y RIF
Sbjct: 145 RDEMNPRFGLMRARQFLMKDMYSFALDSESSQKTYHNISNVYDRIF 190


>gi|302497924|ref|XP_003010961.1| hypothetical protein ARB_02859 [Arthroderma benhamiae CBS 112371]
 gi|291174507|gb|EFE30321.1| hypothetical protein ARB_02859 [Arthroderma benhamiae CBS 112371]
          Length = 581

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 113/197 (57%), Gaps = 1/197 (0%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G+    + G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +SGR    
Sbjct: 19  GIAESKNGGVFHLLPLGLRVQEKLERLIDKHMRKLSASKLSLSSLSSQALWKKSGRLHDD 78

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             E+ R  DR     +  PTHEE +T +    IKSYR+LP   YQI  K+RDE RPR G+
Sbjct: 79  DSEVFRFVDRKKTPFLLAPTHEEEITTVVSGLIKSYRDLPLRVYQISRKYRDEPRPRHGL 138

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R REF+MKD Y+FD T   +  +YN +  +Y+ +F  L L  +   A SG +GG+LSHE
Sbjct: 139 LRGREFVMKDLYTFDSTEAEAIKTYNTVKEAYISLFKELKLPYVVASASSGNMGGNLSHE 198

Query: 210 FIVLADTGE-TQVFCSK 225
           F   +  GE T V CSK
Sbjct: 199 FHFPSPKGEDTIVSCSK 215



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 14/177 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSA---------TFKGADGKDHYV--QMGSYGIGAMRVVAAV 328
           + IE+ H F+ GT+YS  + A         T  G  GK   V  QMG +GIG  R+++AV
Sbjct: 404 QSIELAHTFHLGTRYSEVLQANISINPAILTGAGQKGKQEPVPIQMGCHGIGVSRMISAV 463

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   D KG+ WP ++APF+++++  K  ++   +    I  + ++   D   DD  +  
Sbjct: 464 SDILADEKGLNWPQAIAPFQVAVVPGKGLEKEG-ELVYDIVTQKTQQPIDTILDDRKKDF 522

Query: 389 GSQFAVADLLGFPLQVIVG-SKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFS 443
             +   AD++G+P+ + VG + + + +KVE++  RL  +R  +SLEEV  + S   S
Sbjct: 523 AWKLRDADIIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKVSLEEVPEFVSSLLS 579


>gi|153877657|ref|ZP_02004322.1| Prolyl-tRNA synthetase [Beggiatoa sp. PS]
 gi|152065879|gb|EDN65678.1| Prolyl-tRNA synthetase [Beggiatoa sp. PS]
          Length = 183

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 95/167 (56%), Gaps = 1/167 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  G KYS  M A      GK   + MG YGIG  R+VAA IE +HD  GI
Sbjct: 17  ARGIEVGHIFQLGQKYSQAMQANVLDEQGKSVILTMGCYGIGVSRLVAAAIEQNHDEHGI 76

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP S+APF + L+ +  H  Q  R+A E +Y +L   G DV +DD  E+ G  FA ADL
Sbjct: 77  IWPQSIAPFSVILLPMSMHKSQRLREAAEAMYNQLQSAGIDVLFDDRRERAGVMFANADL 136

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P ++++G   +   ++E K R       + + E +++   +  N
Sbjct: 137 IGIPHRLVIGESGLDKGEIEYKGRRDQKAHSIPMAEAVSFIQTQLQN 183


>gi|291533207|emb|CBL06320.1| Prolyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 253

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 96/164 (58%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  G KYS  + ATF   +GK+  + MG YGIG  R +AA IE  HD  GIIW
Sbjct: 89  GIEVGQVFKLGIKYSKALGATFLDENGKEKPLIMGCYGIGVSRTMAAAIEQFHDDNGIIW 148

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P S+APF++ ++ I A D+      EK+YA +  VG DV  DD  ++ G +F  ADL+G+
Sbjct: 149 PASIAPFEVVIVPINAKDEAQMQIAEKLYADMKNVGIDVLLDDRKDRAGVKFKDADLIGY 208

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P+++ V  K +  ++VEIK R  G   ++ +++          N
Sbjct: 209 PVRITVSPKLLDANEVEIKVRRDGATSNVKVDDCAQTVKDMLKN 252


>gi|169836559|ref|ZP_02869747.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 289

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 98/171 (57%), Gaps = 3/171 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y   +D+   +  D  P+ K V   ARG+EVGHIF  G KYS  + A     +GK   +Q
Sbjct: 100 YDIVADIRTARAGDVSPDGKGVLKIARGMEVGHIFKLGDKYSKALDAKVLDENGKQQVIQ 159

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R+++AVIE  HD  GIIWP S+AP+   +I     D+   +  E+IY  L 
Sbjct: 160 MGCYGIGVSRLMSAVIEQKHDDFGIIWPKSIAPYIADVIIANVKDETQVNVAERIYEALK 219

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               DV  DD  E+ G +F  ADL+GFPL+++ G K  ++  VE+K R TG
Sbjct: 220 NENIDVVLDDRNERAGFKFKDADLIGFPLKIVAG-KGAANGIVEVKDRATG 269


>gi|167947531|ref|ZP_02534605.1| prolyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 110

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 80/110 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  ++E P DAE ASHKLMLR GMI + + G+Y+WLPLG + L  V AI+REE
Sbjct: 1   MRTSEFPLQTVKETPADAETASHKLMLRAGMIRKLAAGLYTWLPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
            +R GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GP H
Sbjct: 61  MDRAGALELLMPAVQPAELWQESGRWEQYGPELLRLKDRHQREFCFGPNH 110


>gi|196247599|ref|ZP_03146301.1| Anticodon-binding domain protein [Geobacillus sp. G11MC16]
 gi|196212383|gb|EDY07140.1| Anticodon-binding domain protein [Geobacillus sp. G11MC16]
          Length = 298

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F  GTKYS  M+A +   +G+   + MG YGIG  R+VAA+ E   D  G+
Sbjct: 134 ARGIEVGHVFKLGTKYSEAMNAVYLDENGRTQTMIMGCYGIGVSRLVAAIAEQFADENGL 193

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + L+   A     R   E+ Y +L + G DV +DD  E+ G +FA +DL+
Sbjct: 194 VWPVSVAPFHVHLLTANAKSDEQRMLAEEWYEKLGQAGFDVLYDDRPERAGVKFADSDLI 253

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G PL+V VG K  S+  VE+K R TG   D+ + E+I
Sbjct: 254 GIPLRVTVG-KRASEGVVEVKVRKTGETFDVPVGELI 289


>gi|34763883|ref|ZP_00144787.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886346|gb|EAA23617.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 411

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D  G
Sbjct: 245 SARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENG 304

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP S+AP+ + +I     ++V     EKIY  L +   D   DD  E+ G +F  ADL
Sbjct: 305 IIWPVSIAPYTVDVIPANIKNEVQVSLAEKIYNELEEEKIDAMLDDRDEKPGFKFKDADL 364

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFP +++VG K   +  VE+K R TG   ++   E+I
Sbjct: 365 IGFPFKIVVG-KRADEGIVELKIRRTGETLELPQNEII 401



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 42/68 (61%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKDAYSF  + E     +  M  +Y RIF R GLK  P+ A+SG IGG  S EF VLA++
Sbjct: 1   MKDAYSFHTSQESLDEEFLNMRNAYSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAES 60

Query: 217 GETQVFCS 224
           GE ++  S
Sbjct: 61  GEDEIIYS 68


>gi|239608018|gb|EEQ85005.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 555

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 19/231 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR + 
Sbjct: 2   LPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFQDRKEA 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
             +  PTHEE +T +    + SYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+
Sbjct: 61  RFLLAPTHEEEITSLVAGAVNSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYT 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQV 221
           FD +PE +  +Y+ +  +Y+R+F  L +  +   A+SG +GG LSHEF +    GE T +
Sbjct: 121 FDYSPETAIKTYSAVKKAYIRLFDELRIPYMIATADSGNMGGSLSHEFHLPNPKGEDTII 180

Query: 222 FCS-------------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            CS             K + D   P  N + D    L++ +E+  AP  +T
Sbjct: 181 SCSSCGNVYNEELSDGKAYEDL-TPPANPNLD---KLSAGLEEQQAPAIST 227



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 98/171 (57%), Gaps = 21/171 (12%)

Query: 281 GIEVGHIFYFGTKYS--------LPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAA 327
            IE+ H F+ GT+YS        +P++    G+   D       ++MG +GIG  R+++A
Sbjct: 378 AIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPLEMGCHGIGVSRMISA 437

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--KVGC-DVFWDDM 384
           V ++  D KG+ WP ++APF++ +I     D+      E++Y  ++  ++G  DV  DD 
Sbjct: 438 VADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDINGRQIGAVDVIVDDR 493

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
              I  +   ADL+G+P+ +++G  + +++K+E++  RL  +RE +SL+++
Sbjct: 494 DRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRETVSLQDL 544


>gi|261200038|ref|XP_002626420.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239594628|gb|EEQ77209.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 555

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 19/231 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR + 
Sbjct: 2   LPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFQDRKEA 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
             +  PTHEE +T +    + SYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+
Sbjct: 61  RFLLAPTHEEEITSLVAGAVNSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYT 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQV 221
           FD +PE +  +Y+ +  +Y+R+F  L +  +   A+SG +GG LSHEF +    GE T +
Sbjct: 121 FDYSPETAIKTYSAVKKAYIRLFDELRIPYMIATADSGNMGGSLSHEFHLPNPKGEDTII 180

Query: 222 FCS-------------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            CS             K + D   P  N + D    L++ +E+  AP  +T
Sbjct: 181 SCSSCGNVYNEELSDGKAYEDL-TPPANPNLD---KLSAGLEEQQAPAIST 227



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 97/171 (56%), Gaps = 21/171 (12%)

Query: 281 GIEVGHIFYFGTKYS--------LPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAA 327
            IE+ H F+ GT+YS        +P++    G+   D       ++MG +GIG  R+++A
Sbjct: 378 AIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPLEMGCHGIGVSRMISA 437

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--KVGC-DVFWDDM 384
           V ++  D KG+ WP ++APF++ +I     D+      E++Y  ++  ++G  D   DD 
Sbjct: 438 VADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDINGRQIGAVDAIVDDR 493

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
              I  +   ADL+G+P+ +++G  + +++K+E++  RL  +RE +SL+++
Sbjct: 494 DRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRETVSLQDL 544


>gi|115906275|ref|XP_001189525.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 149

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 90/144 (62%), Gaps = 1/144 (0%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     G
Sbjct: 2   RALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCLG 61

Query: 108 PTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           PTHEE +TDI       S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD  
Sbjct: 62  PTHEEAVTDIVAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDSN 121

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGL 190
            EG++ +Y  +  +Y RIF  L L
Sbjct: 122 LEGAEETYRSVCEAYQRIFSILDL 145


>gi|115969223|ref|XP_001192584.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 185

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 90/144 (62%), Gaps = 1/144 (0%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     G
Sbjct: 2   RALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCLG 61

Query: 108 PTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           PTHEE +TDI       S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD  
Sbjct: 62  PTHEEAVTDIVAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDSN 121

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGL 190
            EG++ +Y  +  +Y RIF  L L
Sbjct: 122 LEGAEETYRSVCEAYQRIFSILDL 145


>gi|323348900|gb|EGA83137.1| YER087W-like protein [Saccharomyces cerevisiae Lalvin QA23]
          Length = 484

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 100/161 (62%), Gaps = 2/161 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCK 164



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGI 319
           D    ++     E +    + IEVGHIF  G KYS P++  F   + K+  +V MG YGI
Sbjct: 291 DAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGI 350

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIY-----AR 371
           G  R+V A+ E   D  G  WP  +AP+K+S+    N   + Q  +D   K+        
Sbjct: 351 GVSRLVGAIAELGRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQN 410

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           L     D F + +G  IG++  ++  +G PL VIVGSK   + ++EI+    GIR
Sbjct: 411 LQNDILDQFNEKLG--IGARIKLSHAMGIPLCVIVGSKSWPNVEIEIR----GIR 459


>gi|323337977|gb|EGA79216.1| YER087W-like protein [Saccharomyces cerevisiae Vin13]
 gi|323355284|gb|EGA87109.1| YER087W-like protein [Saccharomyces cerevisiae VL3]
          Length = 509

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 101/166 (60%), Gaps = 2/166 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D 
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDI 169



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGI 319
           D    ++     E +    + IEVGHIF  G KYS P++  F   + K+  +V MG YGI
Sbjct: 291 DAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGI 350

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIY-----AR 371
           G  R+V A+ E   D  G  WP  +AP+K+S+    N   + Q  +D   K+        
Sbjct: 351 GVSRLVGAIAELGRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQN 410

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           L     D F + +G  IG++  ++  +G PL VIVGSK   + ++EI+    GIR
Sbjct: 411 LQNDILDQFNEKLG--IGARIKLSHAMGIPLCVIVGSKSWPNVEIEIR----GIR 459


>gi|323305259|gb|EGA59006.1| YER087W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 509

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 101/166 (60%), Gaps = 2/166 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D 
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDI 169



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGI 319
           D    ++     E +    + IEVGHIF  G KYS P++  F   + K+  +V MG YGI
Sbjct: 291 DAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGI 350

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIY-----AR 371
           G  R+V A+ E   D  G  WP  +AP+K+S+    N   + Q  +D   K+        
Sbjct: 351 GVSRLVGAIAELGRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQN 410

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           L     D F + +G  IG++  ++  +G PL VIVGSK   + ++EI+    GIR
Sbjct: 411 LQNDILDQFNEKLG--IGARIKLSHAMGIPLCVIVGSKSWPNVEIEIR----GIR 459


>gi|322697644|gb|EFY89422.1| prolyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 506

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           GA  +S+ T+ S +LW  SGR D    E  + RL DR    ++  PTHEE +T +  S +
Sbjct: 5   GASRLSLSTITSEELWRRSGRLDRVSSEAQLFRLTDRKQVPIMLSPTHEEEITTLVASAL 64

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           KS+++LP   YQ   K+RDE+RPR G++RSREF+MKD Y+FD + E +  +Y  +  +Y 
Sbjct: 65  KSFKDLPLRLYQTTRKYRDEMRPRHGLLRSREFIMKDLYTFDTSFESAIDTYKCVSRAYR 124

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             F  + +  +   A SG +GGD SHE+ +    GE +V 
Sbjct: 125 AFFAEMRIPILVAEASSGDMGGDYSHEYHLAHPIGEDRVI 164



 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 280 RGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           R +E+GH FY G++YS P  +S TF  +      V+MG YGIG  R+  AV E   D +G
Sbjct: 339 RALELGHTFYLGSRYSKPFELSVTFPNSKAPVP-VEMGCYGIGVSRIFGAVAEHKADERG 397

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-RLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + WP ++APF+I +I     +    +  +K+ +   S  G D   DD  E  G +   AD
Sbjct: 398 LNWPRAIAPFEIVVIPTSGVNSQTLEFHDKLTSWSSSGPGFDAVLDDRKETFGWKMQDAD 457

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G+P+ +++G  +      E++ R    +E++++E++
Sbjct: 458 MTGYPVTIVLGKAWRERGVCEVQCRSLSSKENIAVEDL 495


>gi|311893995|dbj|BAJ26403.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 556

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 3/222 (1%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +    P  +    D    +  L+   G++ +  + G+++ LPLG +  D ++ I R+   
Sbjct: 10  ASRLFPTPRPRATDPTAPTKDLLEHLGLVGRTDTTGVHTLLPLGLRVRDQLDRITRDAFE 69

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSH 121
           R G   +++PTLQS  LW ESGR+  Y  E   +  R   A M   PT EE+ T   RSH
Sbjct: 70  RNGFNSLALPTLQSRTLWEESGRWKVYTAEGALVTTRVGGADMCLAPTSEEMATATVRSH 129

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++S+R+LP        KFRDEL PR G+MR REF M DAY+FD    G   S   +  + 
Sbjct: 130 LRSHRDLPVRLTLNTTKFRDELSPRGGLMRGREFTMADAYTFDPDRAGMLESVRLLNRAC 189

Query: 182 LRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGETQVF 222
                 +GL  +    A+ G I    + E +VLAD G++ + 
Sbjct: 190 TDALTGIGLHGVFQAPADGGAISAGPTTEHLVLADFGQSSIL 231



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +EV H+F  GT+YS  M  TF   +G      MG  GIG  R +  +     D  G+ W 
Sbjct: 397 VEVAHVFELGTQYSGKMHLTFTDDNGIQRTPYMGCSGIGLTRCIQTLAGIHRDANGLRWK 456

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
               P  + L+ +++     ++  ++   RL ++G  +  DD     G +F  A  LG P
Sbjct: 457 PGTGPADVHLVVLRSDQAEQQERTDRTARRLQQLGLRLLIDDRPLPAGEKFHYAQALGVP 516

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             +++ S   +D ++E   R TG R  ++ +++
Sbjct: 517 TALVL-SPQRADGELEAIDRWTGRRSTITSDQL 548


>gi|225560003|gb|EEH08285.1| prolyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 555

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 2/183 (1%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR   
Sbjct: 2   LPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFQDRKKA 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
             +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R REF+MKD Y+
Sbjct: 61  RFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYT 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQV 221
           FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG+LSHEF +    GE T +
Sbjct: 121 FDYNAEMAIKTYNAVKDTYVRLFDELRIPYIIATADSGNMGGNLSHEFHLPNPKGEDTII 180

Query: 222 FCS 224
            CS
Sbjct: 181 SCS 183



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 96/171 (56%), Gaps = 21/171 (12%)

Query: 281 GIEVGHIFYFGTKYSLPMSA------TFKGADGKDH-------YVQMGSYGIGAMRVVAA 327
            IE+ H F+ GT+YS  ++A      T    D K +        +QMG +GIG  R+++A
Sbjct: 378 AIELAHTFHLGTRYSKVLNASVAVPSTLLSNDSKANDNSSVSVPLQMGCHGIGVSRMISA 437

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDM 384
           + +S  + KG+ WP ++APF+  +I     D+   +  EK+Y  +S++     D   DD 
Sbjct: 438 IADSLANSKGLNWPRAIAPFEAMII----PDKGLEEEAEKVYDAISRINIDAVDAIIDDR 493

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
            + +  +   ADL+G+P+ ++VG  +  ++K+E++ HRL  +RE +SL ++
Sbjct: 494 DKNLAWKLRDADLIGYPVIIVVGKSWRMENKLEVQCHRLNNLRETVSLPDL 544


>gi|115491451|ref|XP_001210353.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114197213|gb|EAU38913.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 564

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 107/201 (53%), Gaps = 26/201 (12%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L++R G + Q   GI+  LPLG +  D +  +I +       ++M V             
Sbjct: 29  LLIRGGFLRQAYSGIFHMLPLGLRVQDKLERLIDKHMR---LLDMQV------------- 72

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                     R  DR +   +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE R
Sbjct: 73  ---------FRFLDRKESRFLLAPTHEEEITTLVGSLTKSYRDLPLRVYQISRKYRDEPR 123

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKD Y+FD + E +  +Y ++  +Y R+F+ L +  +   A+SG +GG
Sbjct: 124 PRQGLLRGREFIMKDLYTFDYSMEEALKTYGQVRAAYTRLFNELKIPYLVAVADSGNMGG 183

Query: 205 DLSHEFIVLADTGE-TQVFCS 224
           +LSHEF   +  GE T + C+
Sbjct: 184 NLSHEFHFPSSKGEDTVITCT 204



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF---KGADGK--DHYV--QMGSYGIGAMRVVAAVIESSH 333
            IE+GH F+ GT+YS  + A     +   GK  D  V  +MG +GIG  R++ AV +S  
Sbjct: 393 AIELGHTFHLGTRYSEVLQACVMVDRATAGKSEDQTVPMEMGCHGIGVSRMITAVADSLA 452

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC---DVFWDDMGEQIGS 390
           D KG+ WP ++AP+++ ++  K  +    DA EKIY  L+       D   DD  +Q+G 
Sbjct: 453 DSKGLNWPRAMAPYEVIVVPTKGLEA---DA-EKIYDVLASNPTSPFDTILDDRDKQMGW 508

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
           +   ADL+G+P+ V+VG  +     VE++  RL  +RE++ LE +  + +
Sbjct: 509 KLGDADLIGYPVIVVVGKGWKKQQTVEVQCRRLNNLRENVPLERLPEFVN 558


>gi|240276126|gb|EER39638.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325090008|gb|EGC43318.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 555

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 105/183 (57%), Gaps = 2/183 (1%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR   
Sbjct: 2   LPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFQDRKKA 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
             +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R REF+MKD Y+
Sbjct: 61  RFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYT 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQV 221
           FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG LSHEF +    GE T +
Sbjct: 121 FDYNAEMAIKTYNAVKDTYVRLFDELRIPYIIATADSGNMGGSLSHEFHLPNPKGEDTII 180

Query: 222 FCS 224
            CS
Sbjct: 181 SCS 183



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 96/171 (56%), Gaps = 21/171 (12%)

Query: 281 GIEVGHIFYFGTKYSLPMSA------TFKGADGKDH-------YVQMGSYGIGAMRVVAA 327
            IE+ H F+ GT+YS  ++A      T    D K +        +QMG +GIG  R+++A
Sbjct: 378 AIELAHTFHLGTRYSKVLNASVAVPSTLLSNDSKANDNSSVSVPLQMGCHGIGVSRMISA 437

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDM 384
           + +S  + KG+ WP ++APF+  +I     D+   +  EK+Y  +S++     D   DD 
Sbjct: 438 IADSLANSKGLNWPRAIAPFEAMIIP----DKGLEEEAEKVYDAISRINIDAVDAIIDDR 493

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
            + +  +   ADL+G+P+ ++VG  +  +SK+E++ HRL  +RE +SL ++
Sbjct: 494 DKNLAWKLRDADLIGYPVIIVVGKSWRMESKLEVQCHRLNNLRETVSLPDL 544


>gi|84995882|ref|XP_952663.1| prolyl-t-RNA synthase [Theileria annulata strain Ankara]
 gi|65302824|emb|CAI74931.1| prolyl-t-RNA synthase, putative [Theileria annulata]
          Length = 460

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 165/387 (42%), Gaps = 70/387 (18%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG-KEML 94
           S GIY+ LPLG + ++ ++ I   E  + GA+++S P L   ++   +G  ++ G  E+ 
Sbjct: 76  SSGIYTTLPLGHRIINRISNIFNVELYKLGAVQLSFPLLNPDNVVSNTG--NTVGDSELF 133

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +++           T E++   + ++ +   S   LP   YQI  KFRDELR   G +R 
Sbjct: 134 KVSRNGSLEYRLSGTCEDLCNVVLKNELTPLSKLQLPVLLYQINTKFRDELRVNEGKVRL 193

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFLM D YS   + + S  +Y+ +   ++ I   LGL+   +      I    SHE  V
Sbjct: 194 REFLMLDLYSLHSSEQCSDSTYSLVLECFVNILRLLGLQFTTLNCNRNNI---FSHELRV 250

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                + Q             + NT+ +                                
Sbjct: 251 QHSNNQDQ-------------NSNTELE-------------------------------- 265

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                      VGH+F FGT+YS      ++ +  +   + M SYGIG  R++  +I + 
Sbjct: 266 -----------VGHLFKFGTRYSDTYGLEYEVSGRRREKLYMNSYGIGINRLLNVLINNY 314

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  GI  P  VAP+ I++I     D   +D  + I   L K G  V +DD  + I ++ 
Sbjct: 315 SDEFGIKLPQLVAPYDITII-----DSTTKDGWQ-ISRGLMKKGLTVLYDDRNDTIKNKL 368

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +  +G P  +I+G+     +++  K
Sbjct: 369 LDSKRIGIPHILILGNSLNGKNRLNKK 395


>gi|255026350|ref|ZP_05298336.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 237

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 72  AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 131

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 132 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQDAGFSVLIDDRAERAGVKFADAD 189

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P+++ VG K  ++  VE+K R TG   ++  +E++N
Sbjct: 190 LIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLN 228


>gi|255017946|ref|ZP_05290072.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 248

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 83  AEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 142

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 143 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQDAGFSVLIDDRAERAGVKFADAD 200

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P+++ VG K  ++  VE+K R TG   ++  +E++N
Sbjct: 201 LIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLN 239


>gi|255527265|ref|ZP_05394146.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255509050|gb|EET85409.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 556

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 25/281 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  L  L+E P + E+ S+KLM+R G+I + + GIY+++P G+K + NVN +I+ E
Sbjct: 1   MKLSKMILGTLREAPGETELESYKLMVRAGIIRKVASGIYNFMPTGKKVIGNVNNLIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ V      +L  +    +S   +     D+++K    G   +E   +I ++
Sbjct: 61  MEKIDSQEIEVSQFVPFELLNQCNNKESSLTDTFETVDKSEKKFYVGADFKEPYIEIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF--DLTPEGSKHSYNKMF 178
            IKSY+ LP + Y IQ + +DE +P+FG+++S+EF     Y F  DLT   S    N + 
Sbjct: 121 EIKSYKQLPVSIYSIQKQIKDEPKPKFGIIKSKEFNELQCYVFHDDLTE--SSQYINSLC 178

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPS- 234
             +  I+H+  + SI             S  F +    GE  V C +      D  I + 
Sbjct: 179 EVFNSIYHKCRIDSIKTN----------SLRFFIKHPLGEEHVVCCESCGYKEDLEIATC 228

Query: 235 --ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             +  + DD+  +N I    + P   T D     LF++ PE
Sbjct: 229 TLQTEEEDDMKPMNKI----STPDTRTID-ELASLFNTTPE 264



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 1/138 (0%)

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +G I    T YS  M+A F    GK   + + +  I   R++A ++E +HD  GI+WP S
Sbjct: 396 LGQIMNLKTTYSENMNAVFLDKLGKSKPMSIINASINIDRLLALIVEQNHDKNGIVWPKS 455

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           VAP+++ +I     ++      E IY +L  +G DV  DD  E+ G +F  ADL+G P++
Sbjct: 456 VAPYEVIVIAAVFKNEEQMKTAENIYNKLKSLGIDVLLDDRDERAGVKFKDADLIGAPIR 515

Query: 404 VIVGSKFVSDSKVEIKHR 421
           + VG K +SD KVE K R
Sbjct: 516 ITVG-KRISDGKVEFKLR 532


>gi|295667908|ref|XP_002794503.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226285919|gb|EEH41485.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 589

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 1/132 (0%)

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +R  DR +   +  PTHEE +T +  S + SYR+LP   YQ   K+RDE RPR G++R R
Sbjct: 79  MRTLDRKEARFLLAPTHEEEITSLVESSVSSYRDLPLRLYQFGRKYRDEPRPRQGLLRGR 138

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF+MKD Y+FD + E +  +YN +  +Y+R+F+ L L  I   A+SG +GG LSHEF + 
Sbjct: 139 EFMMKDLYTFDYSAEKAIETYNAVKEAYIRLFNELKLPYIVAAADSGNMGGSLSHEFHLP 198

Query: 214 ADTGE-TQVFCS 224
              GE T V CS
Sbjct: 199 NSKGEDTIVSCS 210



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 97/189 (51%), Gaps = 27/189 (14%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSAT-------FKGADGKDHY------------VQ 313
           EN   +   IE+ H F+ GT+YS  ++A+        +G+   +              ++
Sbjct: 398 ENSVETHTAIELAHTFHLGTRYSEVLNASVAIPSSILRGSLTTERTALAQSSRTVSVPLE 457

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL- 372
           MG +GIG  R++AAV ++  D KG+ WP  ++PF + +I+    D+      E++Y  L 
Sbjct: 458 MGCHGIGVSRMIAAVADTLADPKGLNWPRVISPFDVIIIS----DRELEKEAEQVYDTLM 513

Query: 373 --SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDM 429
              K   D   DD  + +  +   ADL+G+P+ +++G  +  D+K+EI+  RL   RE +
Sbjct: 514 ESQKADVDAIIDDREKSLTWKLRDADLIGYPVIIVIGKSWKRDNKLEIQCRRLENFRETV 573

Query: 430 SLEEVINYA 438
           SL+++  Y 
Sbjct: 574 SLQDLRFYT 582


>gi|240144896|ref|ZP_04743497.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203029|gb|EEV01314.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 330

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 92/155 (59%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +RGIEVG+IF  G KY+  M  T+   +G+     MG YGIG  R+ AAV E+ HD  G 
Sbjct: 167 SRGIEVGNIFQLGDKYTKAMKMTYVDQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGP 226

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP S+AP+++ L  ++A ++  R   + +Y +L ++G +V +DD     G  F+ ADLL
Sbjct: 227 IWPKSIAPWQVHLCAVRADNEEVRKFADDLYEKLQEMGIEVIYDDRTVSAGVMFSDADLL 286

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G PL+VIV  + +    VE+  R   ++  + +EE
Sbjct: 287 GIPLRVIVSPRNMKQGVVEVASRDKTLQTQVKMEE 321


>gi|315282168|ref|ZP_07870635.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313614185|gb|EFR87862.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 252

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF   TKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G 
Sbjct: 87  AEGIEVGHIFKLRTKYSQAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGF 146

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 147 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQGAGFSVLIDDRAERAGVKFADAD 204

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L+G P+++ VG K  ++  VE+K R TG   ++  +E++N
Sbjct: 205 LIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLN 243


>gi|296187244|ref|ZP_06855640.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048115|gb|EFG87553.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 556

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 25/281 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  L  L+E P + E+ S+KLM+R G+I + + GIY+++P  +K + NVN +I+ E
Sbjct: 1   MKLSKMILGTLREAPGETELESYKLMVRAGIIRKVASGIYNFMPTRKKVIGNVNNLIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ V      +L  +    +S   +     D+++K    G   +E   +I ++
Sbjct: 61  MEKIDSQEIEVSQFVPFELLNQCNNKESSLTDTFETVDKSEKKFYVGADFKEPYIEIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF--DLTPEGSKHSYNKMF 178
            IKSY+ LP + Y IQ + +DE +P+FG+++S+EF     Y F  DLT   S    N + 
Sbjct: 121 EIKSYKQLPVSIYSIQKQIKDEPKPKFGIIKSKEFNELQCYVFHDDLTE--SSQYINSLC 178

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPS- 234
             +  I+H+  + SI             S  F +    GE  V C +      D  I + 
Sbjct: 179 EVFNSIYHKCRIDSIKTN----------SLRFFIKHPLGEEHVVCCESCGYKEDLEIATC 228

Query: 235 --ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             +  + DD+  +N I    + P   T D     LF++ PE
Sbjct: 229 TLQTEEEDDMKPMNKI----STPDTRTID-ELASLFNTTPE 264



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 1/138 (0%)

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +G I    T YS  M+A F    GK   + + +  I   R++A ++E +HD  GI+WP S
Sbjct: 396 LGQIMNLKTTYSENMNAVFLDKLGKSKPMSIINASINIDRLLALIVEQNHDKNGIVWPKS 455

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           VAP+++ +I     ++      E IY +L  +G DV  DD  E+ G +F  ADL+G P++
Sbjct: 456 VAPYEVIVIAAVFKNEEQMKTAENIYNKLKSLGIDVLLDDRDERAGVKFKDADLIGAPIR 515

Query: 404 VIVGSKFVSDSKVEIKHR 421
           + VG K +SD KVE K R
Sbjct: 516 ITVG-KRISDGKVEFKLR 532


>gi|330878004|gb|EGH12153.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 162

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 2/155 (1%)

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHI+  GTKYS  M     G +GK   + MG YGIG  RVVAA IE + D  GIIW D++
Sbjct: 1   GHIWQLGTKYSEAMKCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTL 60

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVADLLGFPL 402
           APF+I+LI ++      R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P 
Sbjct: 61  APFQIALIPLRYETDAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPH 120

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +++V  + +++  +E K R     + +++ +V+++
Sbjct: 121 RIVVSDRGLAEGNLEYKSRTESQPQAIAVADVLSF 155


>gi|315928700|gb|EFV07980.1| Proline-tRNA ligase [Campylobacter jejuni subsp. jejuni 305]
          Length = 347

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG
Sbjct: 183 QSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKG 242

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L
Sbjct: 243 CIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDRNERFGVKMNDFEL 302

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +GFP  +++G K + ++++E+  R   ++E +  +E++
Sbjct: 303 MGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELM 339


>gi|154287788|ref|XP_001544689.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408330|gb|EDN03871.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 523

 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 1/132 (0%)

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +R  DR     +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R R
Sbjct: 20  MRTLDRKKARFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGR 79

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF+MKD Y+FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG LSHEF + 
Sbjct: 80  EFIMKDLYTFDYNAEMAIKTYNAVKETYVRLFDELRIPYIIATADSGNMGGSLSHEFHLP 139

Query: 214 ADTGE-TQVFCS 224
              GE T + CS
Sbjct: 140 NPKGEDTIISCS 151



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 95/171 (55%), Gaps = 21/171 (12%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF-----------KGADGKDHYV--QMGSYGIGAMRVVAA 327
            IE+ H F+ GT+YS  ++A+            K  D     V  QMG +GIG  R+++A
Sbjct: 346 AIELAHTFHLGTRYSKVLNASVAVPSTLLSNDSKANDNSTFSVPLQMGCHGIGVSRMISA 405

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDM 384
           + +S  + KG+ WP ++APF+  +I     D+   +  EK+Y  +S++     D   DD 
Sbjct: 406 IADSLANSKGLNWPRAIAPFEAMII----PDKGLEEEAEKVYDAISRINIDAVDAIIDDR 461

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
            + +  +   ADL+G+P+ ++VG  +  ++K+E++ HRL  +RE +SL ++
Sbjct: 462 DKNLAWKLRDADLIGYPVIIVVGKSWRMENKLEVQCHRLNNLRETVSLPDL 512


>gi|225166272|ref|ZP_03727969.1| prolyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224799485|gb|EEG18017.1| prolyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 296

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 82/142 (57%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS   +A +     + H + MG YGIG  R + A+IE  HD  GII
Sbjct: 117 RGIEVGHIFKLGTKYSEKFNALYTDDQKQQHPMVMGCYGIGISRTLQAIIEQCHDADGII 176

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP + APF++ +  +   D       EK+ A   + G DV  DD  E+ G +F  ADL+G
Sbjct: 177 WPWACAPFQVLVTVLDPQDATVAALAEKLAAAAERAGADVLLDDRTERPGVKFKDADLIG 236

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
            PL++ VG K + D  +E+K R
Sbjct: 237 IPLRITVGGKGIKDGIIELKWR 258


>gi|289758965|ref|ZP_06518343.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T85]
 gi|289714529|gb|EFD78541.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T85]
          Length = 513

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  
Sbjct: 347 VMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDEL 406

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+
Sbjct: 407 GLRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAE 465

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           LLG P  V+VG  + +D  VE++ R +G
Sbjct: 466 LLGMPWIVVVGRGW-ADGVVELRDRFSG 492



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           GPT   V T   +    SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+ 
Sbjct: 41  GPTTRAV-TLTVKGEYSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDID 99

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             G K +Y+    +Y RIF RL ++ + + A SG +GG  S EF+  + +GE
Sbjct: 100 AAGLKAAYHAHREAYQRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGE 151


>gi|255024838|ref|ZP_05296824.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 170

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 75/127 (59%), Gaps = 4/127 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG   +++ + E S+D  G 
Sbjct: 46  AEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYGIGVSXILSTIAEQSNDENGF 105

Query: 339 IWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +W   ++PF + LI  N+K+ +QV     E +Y  L   G  V  DD  E+ G +FA AD
Sbjct: 106 VWDKQISPFDLHLIPVNMKSEEQVA--FAETLYTSLQDAGFSVLIDDRAERAGVKFADAD 163

Query: 397 LLGFPLQ 403
           L+G P++
Sbjct: 164 LIGLPIR 170


>gi|255027747|ref|ZP_05299733.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 90

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/89 (51%), Positives = 59/89 (66%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           L  +  IIREE    GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPT
Sbjct: 2   LRKIETIIREELEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPT 61

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           HEEV+T + R  +KSY+ LP T YQIQ K
Sbjct: 62  HEEVITALLRDEVKSYKRLPLTLYQIQTK 90


>gi|300870146|ref|YP_003785017.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687845|gb|ADK30516.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 643

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 180/435 (41%), Gaps = 42/435 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      +L L +   H    G   W P G      V + IR E ++ 
Sbjct: 228 KYLKKLKEAKERDHRKLGKELNLFS--FHDEGPGFPFWHPNGMIIYKAVESYIRNENDKR 285

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  P + + +LW  SG +D+Y KE +   + +D      P +      ++ S+I S
Sbjct: 286 GYVEIKTPAILNEELWHRSGHWDNY-KENMYFTEIDDTKYAVKPMNCPGGLIVYNSNIHS 344

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++    R EL     G+ R R F   DA+ F  T E            YL 
Sbjct: 345 YRDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIF-CTEEQLGDEIINTIEYYLS 403

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K                 +F +   T   +   S +  +    S     D + 
Sbjct: 404 VYKDFGFK-----------------DFEIFVSTRPAKSIGSDEIWELATKSLMNALDKLG 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SAT 301
               + E   A Y    D + + + D          R  + G +      +SLPM    +
Sbjct: 447 ISYKVNEGDGAFYGPKIDFNIKDVLD----------RNWQCGTL---QVDFSLPMRFEIS 493

Query: 302 FKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++G DGK H   M    I G+M     ++   ++GK  +W   ++P +++++N+  +++ 
Sbjct: 494 YEGKDGKKHTPVMLHRAILGSMERFIGILVEHYNGKFPLW---LSPIQVAVVNV-LNEEA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   ++  +L + G  V  D+  + +G++     L   P  VI+G++ VS+ K+ I+ 
Sbjct: 550 QINRVHEVAKKLKEAGFRVEIDESNDNLGTKIKKYRLQRTPYTVIIGAEEVSNGKLSIRT 609

Query: 421 RLTGIREDMSLEEVI 435
           R +   +DM L E +
Sbjct: 610 RSSQEIKDMDLTEFM 624


>gi|253795645|ref|YP_003038741.1| putative prolyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
 gi|253739953|gb|ACT34288.1| putative prolyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
          Length = 371

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 144/318 (45%), Gaps = 56/318 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H  SKG+++ LP    AL+ + + +R E N  G  E+ +P          + R  ++ +
Sbjct: 17  VHALSKGVHTLLPQAVHALNKLTSAVRREMNALGFCEVLMPC---------AVRASAFDR 67

Query: 92  EMLRLADRNDKA---MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            +  + D   KA   M+  PT E+V+  +  +        P   YQ+QLKFR E RP  G
Sbjct: 68  RLRAMGDAFIKASNNMVLAPTAEDVVVAMPSA------CAPAKLYQVQLKFRLEPRPSHG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           ++RS EF+MKD Y+   T  G+ +    +  SY+R+    G++  P  A +  IGG  S 
Sbjct: 122 LVRSYEFVMKDGYAVSATRRGALNELKAVMGSYVRVLRGAGIEVAPCVASARDIGGSHSL 181

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD--VHNEK 266
           E + +   G  +V  +K +    +P+         SL S    W A + + S   V ++K
Sbjct: 182 ELVAV---GLGRVAGAKYY----VPAR--------SLAS--ASWRARWLSFSKEYVDDQK 224

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +      +  +S  G+E+ H F F                 K   V M S+G+G  RVV 
Sbjct: 225 VVLG---SHFLSCEGVEIAHAFAFRKL--------------KRKKVWMASFGLGLSRVVG 267

Query: 327 AVIESSHDGKGIIWPDSV 344
             +  + +G+  + P +V
Sbjct: 268 CAL--AGNGELTLAPAAV 283


>gi|213024164|ref|ZP_03338611.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 244

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 2/101 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 133 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 192

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H
Sbjct: 193 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMH 233


>gi|239994811|ref|ZP_04715335.1| prolyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 131

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYA 370
           + MG YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +  H     ++A E +Y 
Sbjct: 1   LTMGCYGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAAEALYE 60

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ + 
Sbjct: 61  ELVALGVEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQLLD 120

Query: 431 LEEVINYAS 439
           +    ++ +
Sbjct: 121 ISAAKDFVA 129


>gi|71899287|ref|ZP_00681448.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71730913|gb|EAO32983.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 261

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 2/173 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS-ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+ N    D   +  ++  ARGIEVGH+F  G KY+  M AT     GK   + MG Y
Sbjct: 78  VADIRNVIEGDRAVDGGKICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCY 137

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD  GIIWP  +AP+++++  I    D V   A E + A L    
Sbjct: 138 GIGVSRIVAAAIEQNHDVAGIIWPAPIAPWQVAVCVINPKKDPVIIAAAELLLAELQSAD 197

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            D   DD G + G  FA  +L+G P +++V  + ++    E + R T + E++
Sbjct: 198 VDTVLDDRGLRPGVMFADMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENL 250


>gi|296127837|ref|YP_003635089.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296019653|gb|ADG72890.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 643

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 179/435 (41%), Gaps = 42/435 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      +L L +   H+   G   W P G      V + IR E ++ 
Sbjct: 228 KYLKRLKEAKERDHRKLGKELNLFS--FHEEGPGFPFWHPRGMVIYKAVESYIRNENDKR 285

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  P + + +LW  SG +D+Y KE +   + ++      P +      ++ S+I S
Sbjct: 286 GYVEIKTPAILNEELWHRSGHWDNY-KENMYFTEIDETKYAVKPMNCPGGLIVYNSNIHS 344

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++    R EL     G+ R R F   DA+ F  T E            YL 
Sbjct: 345 YRDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIF-CTEEQLGDEIINTIEYYLS 403

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G ++                 F +   T   +   S +  +    S     D + 
Sbjct: 404 VYKDFGFEN-----------------FEIFVSTRPAKSIGSDEIWELATKSLINALDKLG 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SAT 301
               I E   A Y    D + + + D          R  + G +      +SLPM    +
Sbjct: 447 IKYKINEGDGAFYGPKIDFNIKDVLD----------RNWQCGTL---QVDFSLPMRFEIS 493

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++G DG+ H  V +    +G+M     ++   ++GK  +W   ++P +++++N+   ++ 
Sbjct: 494 YEGKDGRKHTPVMLHRAILGSMERFIGILVEHYNGKFPLW---LSPLQVAVVNV-LDEKS 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  D+  E +G++     L   P  VI+G++ VS+ K+ I+ 
Sbjct: 550 QIDRVNEVAKALKDAGFRVETDEGNENLGTKIKKYRLQRTPYTVIIGAEEVSNGKLSIRT 609

Query: 421 RLTGIREDMSLEEVI 435
           R +   +DM L E I
Sbjct: 610 RSSQEIKDMDLNEFI 624


>gi|170595002|ref|XP_001902209.1| Met-10+ like-protein [Brugia malayi]
 gi|158590243|gb|EDP28945.1| Met-10+ like-protein [Brugia malayi]
          Length = 693

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 169/381 (44%), Gaps = 58/381 (15%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LP  ++ +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  EM  L+D+ ++
Sbjct: 341 LPCCRRIIDKLIKVIETELNAIGAYKISMPILGAKEMWQKAGRWSAFKSEMFHLSDKTNQ 400

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                PTHEE++T +      ++    F  Y   L  R++++    V+ +++  +   Y 
Sbjct: 401 VYCLQPTHEEMVTKLVAEQTANHFYGNFDNY--ILHSRNQIK---SVLVTKKHFVLYFYL 455

Query: 163 FD----LTPEGSKHSYNKMF----------VSYLRIFH-RLGLKSIPMRAESGPIGGDLS 207
            +       E  +  Y  M            +Y RIFH RL +    +RA++G IGGD+S
Sbjct: 456 LNNGTATIGELREAVYPLMLYQMGPKFRDETTYQRIFHDRLDINFYIVRADAGNIGGDMS 515

Query: 208 HEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           HE+ +   T    + +CSK  +       N D         ++++   P   + +     
Sbjct: 516 HEYHLPCKTSRDSIAYCSKCNLGM-----NHD---------LLKRGEKPCCCSKE----- 556

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
            + S+ E        IE+ H F  G  ++        GA   D  + M  +GIG   ++A
Sbjct: 557 -YISIVET-------IEIAHTFQLGDLFTKKF-----GAKHNDQPLIMNCFGIGIGLLIA 603

Query: 327 AVIES-SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC---DVFWD 382
            +I S S   K +    ++ PFK+++I          +  E I   LS++     D+F D
Sbjct: 604 VIINSMSPSTKALRLLYALIPFKVAVILPNKTQSETMEFAENIIGHLSQISSVQNDIFVD 663

Query: 383 D-MGEQIGSQFAVADLLGFPL 402
           D +   IG +   A  LG  L
Sbjct: 664 DRLDNSIGRRLLTAANLGIFL 684


>gi|169607863|ref|XP_001797351.1| hypothetical protein SNOG_06993 [Phaeosphaeria nodorum SN15]
 gi|111064524|gb|EAT85644.1| hypothetical protein SNOG_06993 [Phaeosphaeria nodorum SN15]
          Length = 373

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 7/158 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           A+ IEV H F+ GT+YS P+ A     DGK    VQMG +GIG  R++ A+     D KG
Sbjct: 210 AKAIEVAHTFHLGTRYSDPLGAIVSMPDGKTREAVQMGCHGIGVSRLIGAIASLLSDSKG 269

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           + WP  +AP++ +++      Q+     E++Y  L   G D   DD  G+ +G +   AD
Sbjct: 270 LNWPRVMAPYEAAIL---VAPQIEEGGAERVYDALD--GVDAVLDDREGKSLGWKLRDAD 324

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L+G+P+ V++G  +     VE++ R   +++D+ L+E+
Sbjct: 325 LIGYPVVVVMGRSWKEKGVVEVQCRRLDVKKDVGLDEL 362



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD  P  +  +Y  +  +Y  IF  L L  +   A+SG +GG LSHE+  ++  
Sbjct: 1   MKDLYTFDSNPSAALETYEAVRSAYTAIFDALKLPYLVADADSGNMGGKLSHEYHFVSPK 60

Query: 217 GETQVF 222
           GE  V+
Sbjct: 61  GEDNVW 66


>gi|225619668|ref|YP_002720925.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214487|gb|ACN83221.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 643

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 178/435 (40%), Gaps = 42/435 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      +L L +   H    G   W P G      V + IR E ++ 
Sbjct: 228 KYLKKLKEAKERDHRKLGKELNLFS--FHDEGPGFPFWHPRGMIIYKAVESYIRNENDKR 285

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  P + + +LW  SG +D+Y KE +   + ++      P +      ++ S+I S
Sbjct: 286 GYVEIKTPAILNEELWHRSGHWDNY-KENMYFTEIDETKYAVKPMNCPGGLIVYNSNIHS 344

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++    R EL     G+ R R F   DA+ F  T E            YL 
Sbjct: 345 YRDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIF-CTEEQLGDEIINTIEYYLS 403

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G ++                 F +   T   +   S +  +    S     D + 
Sbjct: 404 VYKDFGFEN-----------------FEIFVSTRPAKSIGSDEIWELATKSLINALDKLK 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SAT 301
               I E   A Y    D + + + D          R  + G +      +SLPM    +
Sbjct: 447 ISYKINEGDGAFYGPKIDFNIKDVLD----------RNWQCGTL---QVDFSLPMRFEIS 493

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++G DGK H  V +    +G+M     ++   ++GK  +W   ++P +++++N+  +++ 
Sbjct: 494 YEGKDGKKHTPVMLHRAILGSMERFIGILVEHYNGKFPLW---LSPLQVAVVNV-LNEKP 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  D+  + +G++     L   P  VI+G++ VS  K+ I+ 
Sbjct: 550 QIDRTNEVAKALKDAGFRVEVDESNDNLGTKIKKYRLQRTPYTVIIGAEEVSSGKLSIRT 609

Query: 421 RLTGIREDMSLEEVI 435
           R +   +DM L E I
Sbjct: 610 RSSQEIKDMDLNEFI 624


>gi|154304091|ref|XP_001552451.1| hypothetical protein BC1G_09681 [Botryotinia fuckeliana B05.10]
 gi|150854316|gb|EDN29508.1| hypothetical protein BC1G_09681 [Botryotinia fuckeliana B05.10]
          Length = 426

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 25/184 (13%)

Query: 280 RGIEVGHIFYFGTKYSLPMSAT-----------FKGAD-----GKDHYVQ----MGSYGI 319
           + IE+GH F+ GT+YS PM AT            K  +     G++  +Q    MG +GI
Sbjct: 246 KAIELGHTFHLGTRYSKPMEATVTVPSGLVGGNLKAGENEPQQGRNDQIQVPMEMGCHGI 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+V AV E+  D KG+ WP  +APF+I ++  K  D+   DA + I+  LS    D 
Sbjct: 306 GVTRMVGAVAETLADEKGLNWPRVMAPFEIVVVPGKGLDE---DALQ-IFDTLSAAAMDP 361

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD    IG +   ADL+G+P+ V++G K+  +   E++ R   ++ED+ +E++ N+  
Sbjct: 362 VVDDREVSIGWKMKDADLIGYPVIVLLGRKW-KEGLCEVQCRRLDVKEDIRVEDLKNFVG 420

Query: 440 HRFS 443
              S
Sbjct: 421 KLLS 424



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD     +  +Y  +  +Y  +F  L +  +   A+SG IGGDLSHEF      
Sbjct: 1   MKDLYTFDYNSTSALSTYEDVRKAYHNLFDELKIPYLVAEADSGDIGGDLSHEFHFPTKI 60

Query: 217 GETQVF-CSK 225
           GE  +  CSK
Sbjct: 61  GEDNIISCSK 70


>gi|68475164|ref|XP_718300.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|68475357|ref|XP_718201.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46439958|gb|EAK99269.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46440061|gb|EAK99371.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
          Length = 411

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 15/153 (9%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD----HYVQMGSYGIGAMRVVAAV 328
           E K  ++  IEVGH FY G KYS P++         +      + MG YGIG  R++AA+
Sbjct: 196 EGKLSASSAIEVGHTFYLGDKYSKPLNLEVDVPTSNNSIEKQRIMMGCYGIGISRIIAAI 255

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQV-----------CRDACEKIYARLSKVGC 377
            E + D KG+ WP S+AP++++++ +    Q+            +D  ++IY  L++   
Sbjct: 256 AEINRDEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYNILNQANI 315

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           D   D+  + +G +   +DLLG PL +I+G+++
Sbjct: 316 DYRLDNRSDSMGKKLKQSDLLGIPLSIILGNQY 348



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           YSFDL    +  +Y K+  +Y +IF  LG+  +   A+SG IGG LSHE+  L  +GE  
Sbjct: 3   YSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEADSGDIGGSLSHEWHYLNSSGEDT 62

Query: 221 VF 222
           VF
Sbjct: 63  VF 64


>gi|73667729|ref|YP_303744.1| prolyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|114152210|sp|Q46G28|SYP_METBF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72394891|gb|AAZ69164.1| prolyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 480

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 173/416 (41%), Gaps = 71/416 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG+Y W P G     N   IIRE  + +G  E   P L   + +++   +   +  E+  
Sbjct: 37  KGLYVWYPFGFAIRRNTYNIIREILDNSGHQEALFPLLIPENEFMKEAEHIKGFEDEVYW 96

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  D  +   PT E  +  +++  ++S+ + P   YQI   FR E +    ++R
Sbjct: 97  VTHGGRDTLDIPLALRPTSETAIYPMYKMWVRSHADFPIKIYQIVNTFRYETKHTRPLIR 156

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++   T E ++    +    Y  I+ RLG+  +  R              
Sbjct: 157 LREITSFKEAHTVHATWEDAEAQVKEAIGLYTEIYRRLGVPVLRSR-------------- 202

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          D+  FP      D+ D  +L++I                      
Sbjct: 203 -------------RPDWDKFP----GADYTD--ALDAI---------------------- 221

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+      R +++G   + G  ++      ++  DG+  Y     YGI + R +AA I 
Sbjct: 222 MPD-----GRTLQIGTAHHLGDNFAKTFDIKYETPDGEQRYAYQTCYGI-SERSIAATIS 275

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D KG++ P  +AP ++ +I I   K  ++V   AC+ +  RL+K G  V  D    +
Sbjct: 276 IHGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVLA-ACKDVKERLTKAGIRVEIDASDLR 334

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G+++   ++ G PL++ +G + + ++      R TG +E +SL E+    S +F 
Sbjct: 335 PGAKYYKWEMKGVPLRLEIGPRDLQNNVAVAVRRDTGEKEQISLPEIEAGVSSKFE 390


>gi|3873219|gb|AAC77448.1| DrpA [Streptococcus mutans]
          Length = 91

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 58/80 (72%)

Query: 11 LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
          L+E P DA++ SH LM+R G I Q + G+YS+LPL  + ++   AI+REE ++ GA+EM 
Sbjct: 12 LREMPSDAQVISHALMVRAGYIRQVTSGVYSYLPLPNRVIEKFKAIMREEFDKIGAVEML 71

Query: 71 VPTLQSADLWVESGRYDSYG 90
           PTL +ADLW ESGRYD+Y 
Sbjct: 72 APTLLTADLWKESGRYDTYA 91


>gi|218884312|ref|YP_002428694.1| prolyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218765928|gb|ACL11327.1| prolyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 479

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 169/408 (41%), Gaps = 69/408 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML- 94
           KG+Y W+P G KAL     II +   +TG  E   PT+    ++  E      +G E   
Sbjct: 36  KGMYVWMPYGLKALRLTQRIIVDLLEKTGHQEAYFPTMVPESVFSREKDFLQGFGGETFI 95

Query: 95  ---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
               +  R ++ +   PT E VM  ++   IK  ++LP   YQ+   FR E +    ++R
Sbjct: 96  VEGTMTRRFNERLFVRPTSETVMYYMWNMWIKGRKDLPLKMYQVVNVFRYETKMTHPILR 155

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +   +A++   + E ++    +    Y   F+RL L                   F
Sbjct: 156 VREIMGFIEAHTAHHSREEAEKQIIEAIGIYKEFFNRLQLPY-----------------F 198

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           IV     +T  F   ++        N DF  +                            
Sbjct: 199 IVKTPPWDT--FAGAEY--------NYDFITV---------------------------- 220

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K     G+E+G +   G K++      F   DG++ YV    YG+ + RV+ AVI 
Sbjct: 221 MPDGK-----GLELGSVINLGQKFAGAFEIKFMDTDGEEKYVYQTCYGV-SERVLGAVIG 274

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQI 388
              D  G+ +P  +AP ++ ++ I K  ++   +   KI + L   G  VF D D+    
Sbjct: 275 IHGDEVGLFFPPEIAPIQVVIVPIMKPGEKEILEYALKIGSMLESHGLRVFIDSDLEHTP 334

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G ++   ++ G P ++ VG++ V  S V I  R    ++ + LEEV+ 
Sbjct: 335 GWKYYYWEMKGVPTRIEVGAREVETSTVTIARRDKREKQVVRLEEVLE 382


>gi|324513749|gb|ADY45635.1| Prolyl-tRNA synthetase [Ascaris suum]
          Length = 287

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 45/279 (16%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGP 201
           + PRFG++RSREFLM D YSFD++ E +  +Y  +  +Y  I    L  +   +RA++G 
Sbjct: 1   MNPRFGLLRSREFLMNDLYSFDISEEDALKTYRIVSQAYNHILQDTLQFEVHVVRADNGQ 60

Query: 202 IGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           IGG +SHE+ + + +GE + V+C K                      I  +    +    
Sbjct: 61  IGGAVSHEYHLPSTSGEDSIVYCEK------------------CSKGINAELARRHEKPC 102

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
               E+    +P         +E+ H F  G  +S  + A ++        + M  YG+G
Sbjct: 103 SECTEECLKVIP--------SVEIAHTFQLGDLFSKSLGARYQNVA-----MVMNCYGLG 149

Query: 321 AMRVVAAVIES-SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA--------R 371
             R++AA I+  S D   +  PD++ PFK+++I      ++  D     YA         
Sbjct: 150 IGRIMAAAIDVLSPDQNSLRLPDAICPFKMAIIPPADSSKI--DPELASYAISLAQQLDS 207

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSK 409
            + +  +VF+DD  +  IG +  +A  LG P   +VGS+
Sbjct: 208 TTNLHNEVFYDDRTDYSIGKRLLLATQLGIPHIAVVGSR 246


>gi|156742938|ref|YP_001433067.1| proline--tRNA ligase [Roseiflexus castenholzii DSM 13941]
 gi|156234266|gb|ABU59049.1| Proline--tRNA ligase [Roseiflexus castenholzii DSM 13941]
          Length = 564

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 4/155 (2%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G  + H  + G   +    ATF   +G    + + S+ +   R +  +IE   D  GI+W
Sbjct: 408 GFTIVHAIHHG---AFAQDATFLDQEGVSRPIVLASFRMLLERALLTIIEQHCDQAGIVW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
               APF + LI +   D   R A + +Y  L   G  V +DD  E  G +F  ADL+G 
Sbjct: 465 TPETAPFDVHLIRLGKQDAT-RQAADALYDELIAAGIAVLYDDRNETAGVKFNDADLIGL 523

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           PL++++G +F++D  VEIK R TG+   M  +E+I
Sbjct: 524 PLRLVIGDRFLTDGLVEIKQRATGMITKMPRQEII 558



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 129/289 (44%), Gaps = 20/289 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P D +  + +LMLR G+  + S G  ++LP+G + L  + A+  EE
Sbjct: 1   MRISALFGRTLRETPADIDYPALRLMLRAGLA-RLSAGALAFLPIGTRVLRRLEAMAHEE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSY---GKEMLRLADRNDKAMIYGPTHEEVMTDI 117
             R GA E+ +P +++      S R  S        +  +D++ + + + PT    +  +
Sbjct: 60  LTRIGAQEIHLPPVRT---LSASDRVQSRLLPASSTMHGSDQSRRLLAFDPTDTTTIASL 116

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
             S I SYR LP   YQ      ++ R  +     RE +    Y+        + +  ++
Sbjct: 117 AASEIASYRQLPALLYQRHPISCNDCRSSW----LREEIALTVYALGGGAHELEETGTQV 172

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGETQVFCSKDFMDFPI-PS 234
           + ++ RIF R  +  I   AE+G  G +  ++  ++ +++ G+  +   +      I  +
Sbjct: 173 YSAFERIFRRCDMHLIA--AEAGYTGENDQVTRAYVAVSEHGDIDLMICESCSYTAIREA 230

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATS----DVHNEKLFDSLPENKRVSA 279
             T FD  ++ + + ++   P A  +     + +   F  +PE+    A
Sbjct: 231 ARTAFDSTLATSMMKDEPDHPEAIATPNCATIADLARFCGVPESATAKA 279


>gi|313619135|gb|EFR90924.1| prolyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 145

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 13/152 (8%)

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAH 357
           AT    +G+   + MG YGIG  R+++A+ E S+D  G++W   ++PF + LI  N+K+ 
Sbjct: 1   ATILDENGRAQPIIMGCYGIGLSRILSAIAEQSNDENGLVWDKQISPFDLHLIPVNMKSE 60

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +QV     E +Y  L K G  V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE
Sbjct: 61  EQVA--FAESLYDSLQKAGFSVLIDDRTERAGVKFADADLIGLPIRITVGKK-AAEGIVE 117

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K R TG        E+I        N  P+L
Sbjct: 118 VKIRKTG--------EMIEVRQDELLNTLPIL 141


>gi|313680219|ref|YP_004057958.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
 gi|313152934|gb|ADR36785.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
          Length = 649

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 169/420 (40%), Gaps = 49/420 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G    + + A +R+EQ + G   ++ P + S +L+  SG Y  Y +    
Sbjct: 266 GKGLVLWLPKGNVLREELVAFMRDEQIKRGYQLVTTPHIGSLELYKTSGHYPYYAESQFP 325

Query: 96  LADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
             +  D +A +  P +      I+    +SYR LP    +    +R E      G+ R R
Sbjct: 326 PMELEDGEAYLLKPMNCPHHVRIYAMRPRSYRELPLRLAEFGTVYRFEQSGELHGLTRVR 385

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-----GDLSH 208
            F   DA+ F  TPE  K  +  +    L++F  LGL     R      G     GD  H
Sbjct: 386 GFTQDDAHIF-CTPEQVKEEFLGVLDLTLKVFRTLGLSDFRARIGVRDPGSDKYVGDAEH 444

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
             +      + Q  C +  +D+ I   +  F     L+ +V                   
Sbjct: 445 WAVA---ERQIQEACDEAGLDYTIEEGDAAFYG-PKLDFVV------------------- 481

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
                 K V +R  ++G I      Y+LP      +KGADG++H  V +     G++   
Sbjct: 482 ------KDVLSREWQLGTI---QVDYNLPERFDIGYKGADGEEHRPVMIHRAPFGSLERF 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++     G+  +W   +AP ++ ++ I        D   K+ A L   G  V  DD  
Sbjct: 533 IGILIEHFAGEFPLW---LAPVQVVVVPITDRHH---DYARKVRAELEAAGLRVEVDDRP 586

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E++ ++   A+    P+ ++VG K   +  V ++ R TG R   +L EV+   + R    
Sbjct: 587 ERMNAKIRDAETQKVPVILVVGDKETEEGTVAVRDRRTGERTTRALSEVVRDLAERVRTR 646


>gi|148656401|ref|YP_001276606.1| proline--tRNA ligase [Roseiflexus sp. RS-1]
 gi|148568511|gb|ABQ90656.1| Proline--tRNA ligase [Roseiflexus sp. RS-1]
          Length = 571

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 1/155 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G  +G    +G +      ATF   +G    + M  + I   RV+   +E   D  GI+W
Sbjct: 408 GFIIGRDLRYGARSVQVSGATFLDREGVVRPITMSLFSIALERVLLVAVEQHCDQSGIVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +APF + L+ +   D   R A + +Y  L+  G  V +DD  E  G +F  ADL+G 
Sbjct: 468 SPEIAPFHVHLVRLGKQDAT-RQAADALYDELTAAGIAVLYDDRDETAGVKFNDADLIGA 526

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           PL++++G +F+SD  VE+K R +G+       E++
Sbjct: 527 PLRLVIGDRFLSDGLVEVKQRASGVIAKTPQSEIV 561



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  F   L+++P +    + +LM+R G++ + S G  + LP+G +AL  +  I+REE
Sbjct: 1   MRMTTLFGRTLRQSPSEINHPTLRLMVRAGLV-RLSSGALTLLPVGTRALRRIEMIVREE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ +P  +S           +    +L   D+  +++   PT E  +  +  +
Sbjct: 60  LTRIGLQEVYLPLFRSGAPLDPLFSSLASASSILHCTDQFGRSLSILPTDEAWIASLAAT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQ++  +  + R  +     R  +    Y+ D +    + S   +  +
Sbjct: 120 EIASYRQLPVLLYQVRPTYCGDCRSSW----LRAGVTAIIYALDHSDADVQESSALVRQA 175

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           + R+F R+ ++  P+ A   P+ GD +  ++ L++ G+  + 
Sbjct: 176 FTRLFERINVQVAPVEAGRDPVSGDEAFAYVALSEYGDVDLM 217


>gi|21226809|ref|NP_632731.1| prolyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|74580278|sp|Q8PYZ1|SYP_METMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|20905107|gb|AAM30403.1| Prolyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 480

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 172/407 (42%), Gaps = 71/407 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG+Y W P G     N  +IIRE  + +G  E   P L   + +++   +   +  E+  
Sbjct: 37  KGLYVWYPFGFAIRRNTYSIIREILDNSGHQETLFPLLIPENEFMKEAEHIKGFENEVYW 96

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  D  +   PT E  +  +++  ++S+ + P   YQI   FR E +    ++R
Sbjct: 97  VTHGGKDPLDIPLALRPTSETAIYPMYKKWVRSHADFPLKLYQIVNTFRYETKHTRPLIR 156

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++   T E ++    +    Y  I+ RL   ++P+     P         
Sbjct: 157 LREITSFKEAHTVHATWEDAEAQVKEAIGLYTEIYRRL---AVPVLRSRRP--------- 204

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          D+  FP      D+ D  +L+++                      
Sbjct: 205 ---------------DWDKFP----GADYTD--ALDAV---------------------- 221

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K      +++G + + G  ++      ++  DG+  Y     YGI + R +AA I 
Sbjct: 222 MPDGKT-----LQIGTVHHLGDNFAKTFDIKYEAPDGEQRYAHQTCYGI-SERSIAATIS 275

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D KG++ P  +AP ++ +I I   K  ++V   AC+ +  RL K G  V  D    +
Sbjct: 276 IHGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVFA-ACKDVQERLKKAGIRVEVDASDLR 334

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G+++   ++ G PL++ +G + + ++      R TG ++ ++L E+
Sbjct: 335 PGAKYYKWEMKGVPLRLEIGPRDLQNNVAVAVRRDTGEKDQITLLEI 381


>gi|315425642|dbj|BAJ47301.1| prolyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 484

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 172/431 (39%), Gaps = 72/431 (16%)

Query: 24  KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           KL+L   ++      KG   +L  G   L  V  ++ +E   TG  EM  P + + +L  
Sbjct: 26  KLLLEARIVDDRFPVKGFSVYLENGAYILRRVREMLEKELRETGHKEMIFPLVTTEELLG 85

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+     +  E+  +        D  +I  PT E +M  +F+  I+S+ +LP   +Q  
Sbjct: 86  KEAQHIKGFSTEVFVIESAGGKPLDVKLIVRPTSETIMYPMFKLWIRSHADLPLLVHQSN 145

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           + +R E +    ++R RE    +A++   T   ++    K    Y ++  +LGL  +   
Sbjct: 146 MVYRHETKATRPLLRVREIPWNEAHTVHATAAEAEQQVRKAVEIYRKVLDQLGLAYL--- 202

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                   V    DF  FP                      A Y
Sbjct: 203 ------------------------VLKRPDFDKFP---------------------GARY 217

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +          FD+   + RV+    +V  +   G  +S      F+  DGK        
Sbjct: 218 SIA--------FDAWNPDGRVN----QVATVHNLGKNFSKVFEIEFETRDGKRENPHQLC 265

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSK 374
           YG G  RV+AA+I    D +G++ P  VAP  + ++ I  K  ++  +  C  +  RL K
Sbjct: 266 YGFGYSRVLAALISQHGDDRGLVLPPVVAPLHVVIVPIVFKGQEESIKQFCHSLAERLQK 325

Query: 375 VGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               V  DD  +   G +F   + LG P+++ +G + V++++  +  R T  ++ +++EE
Sbjct: 326 FAVKV--DDREDVTPGEKFYHWEKLGVPVRLEIGPREVAENRATLFRRDTLEKQVVAVEE 383

Query: 434 VINYASHRFSN 444
           +     +  +N
Sbjct: 384 IERAVENVLTN 394


>gi|207092594|ref|ZP_03240381.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 372

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 77/142 (54%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E   D  G +
Sbjct: 207 KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILEQKSDDLGCV 266

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  + APF + ++     D+  +    ++Y RL + G D   DD   + G++    +L+G
Sbjct: 267 WTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIG 326

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
             L +IVG + +   + E   R
Sbjct: 327 ERLALIVGKQTLESKEFECIKR 348


>gi|297527274|ref|YP_003669298.1| prolyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256190|gb|ADI32399.1| prolyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 483

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 166/408 (40%), Gaps = 69/408 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEML- 94
           KG+  W+P G KAL  +  I+      TG  E   PT+    ++ +   +   +G E   
Sbjct: 39  KGMNVWMPYGLKALRMIQKIMINLLEETGHEEAYFPTMIPESVFSKEKDFLQGFGGETFV 98

Query: 95  ---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
               +  + ++ +   PT E VM  ++   IK  ++LP   YQI   FR E +    ++R
Sbjct: 99  VEGTMTKKFNEKLFVRPTSETVMYYMWNIWIKGRKDLPLKMYQIVNVFRYETKMTHPILR 158

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +   +A++   T E ++   N+    Y + F  L                 L   F
Sbjct: 159 VREIMSFIEAHTAHATSEEAEKQINEALNIYKKFFDSL-----------------LLPYF 201

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           IV     +T  F   ++        N DF                              +
Sbjct: 202 IVKTPPWDT--FAGAEY--------NYDF----------------------------ITA 223

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K     G+E+G +   G K++      F  +DGK  YV    YG+   R + AVI 
Sbjct: 224 MPDGK-----GLELGSVINLGQKFARAFDIKFMDSDGKTKYVYQTCYGVSE-RTLGAVIA 277

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQI- 388
              D KG+  P  +AP ++ ++ I   D Q   +    I  +LS+ G   + DD  E   
Sbjct: 278 IHGDKKGLFLPPIIAPIQVVIVPIARRDEQDIIEYARGISEKLSEAGIRTYLDDDPEHTP 337

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G ++   ++ G P ++ +G + ++++ V I  R    +  +++ E+I+
Sbjct: 338 GWKYYFWEMKGVPTRIEIGRRELNNNTVTIARRDGAKKITVNINELID 385


>gi|325969359|ref|YP_004245551.1| prolyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323708562|gb|ADY02049.1| prolyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 510

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 160/394 (40%), Gaps = 68/394 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG Y W P G K    V   +R   + TG  E+  P     + L  ES     +  E+  
Sbjct: 63  KGAYVWRPYGMKIRRLVETYVRFLHDETGHQEVLFPVFIPYEFLAKESEHIRGFESEVFW 122

Query: 96  LAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++    N++ ++  PT E  M  +F+  IK + +LPF  YQI   FR E +    ++R R
Sbjct: 123 VSKGGANEERLVLRPTSETAMMPMFKLWIKDHTDLPFRVYQIVSVFRAETKATRPMIRLR 182

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           E  M K+A++     E ++    +    Y +IF  LG   IP      P     +     
Sbjct: 183 EISMFKEAHTAHADREDAERQVREAVEIYKKIFDYLG---IPYLINQRPEWDKFAGAVYT 239

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +A                        FD ++     ++  T  Y  T+     K+FD   
Sbjct: 240 MA------------------------FDTVMPDGKTMQIGTVHYLGTN---FSKVFD--- 269

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                               KY  P        +G   YV   SYGI   RV+AA+I   
Sbjct: 270 -------------------VKYLTP--------NGDWDYVHTTSYGISE-RVIAAMIAMH 301

Query: 333 HDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-G 389
            D KG++ P +VAP ++ +I I  K  +++       I   LS VG  V  DD  ++  G
Sbjct: 302 GDDKGLVLPPNVAPIQVIIIPIMYKGTEEIILRETRSIQEELSNVGIRVKIDDRTDRTPG 361

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            ++   ++LG PL++ +G K + + +V +  R T
Sbjct: 362 WKYNYWEMLGVPLRIEIGPKDIENRQVVLARRDT 395


>gi|119495835|ref|XP_001264694.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119412856|gb|EAW22797.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 441

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 17/170 (10%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF-------KGADGKDHYV--QMGSYGIGAMRVVAAVIES 331
            +E+GH F+ GT+YS  + A+         G+  KD  V  QMG +GIG  R+++AV +S
Sbjct: 268 AVELGHTFHLGTRYSEVLQASVMVDRSLSGGSQSKDQLVPLQMGCHGIGVSRMISAVADS 327

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL---SKVGCDVFWDDMGEQI 388
             D KG+ WP ++AP+++ ++  K  +       EK+Y  L        D   DD  + +
Sbjct: 328 LADSKGLNWPRAMAPYEVVVVPGKGLET----EAEKVYDSLVSNHTSSIDAILDDRDKPM 383

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINY 437
           G +   ADL+G+P+ V+VG  +     +E++  RL  +RED+ L+++ ++
Sbjct: 384 GWKLGDADLIGYPVIVVVGKGWKKAQTLEVQCRRLDNLREDVPLDQLPSF 433



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD + E +  +YN +  +Y  +F  L +  +   A+SG +GG LSHEF   +  
Sbjct: 1   MKDLYTFDYSVEEALKTYNLVKAAYKNLFDELKIPYLVAAADSGNMGGSLSHEFHFPSSK 60

Query: 217 GE-TQVFCS 224
           GE T + CS
Sbjct: 61  GEDTVISCS 69


>gi|20092682|ref|NP_618757.1| prolyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|74580394|sp|Q8TJA2|SYP_METAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19917968|gb|AAM07237.1| prolyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 480

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 166/416 (39%), Gaps = 71/416 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG+Y W P G     +   IIRE  + +G  E   P L   + +++   +   +  E+  
Sbjct: 37  KGLYVWYPFGFAIRRSTYNIIREILDNSGHQETLFPLLIPENEFMKEAEHIKGFENEVYW 96

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  D  +   PT E  +  +++  ++S+ + P   YQI   FR E +    ++R
Sbjct: 97  VTHGGKDSLDIPLALRPTSETAIYPMYKMWVRSHADFPIKLYQIVNTFRYETKHTRPLIR 156

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++   T E ++    +    Y  I+ RL   ++P+     P         
Sbjct: 157 LREITSFKEAHTVHATWEDAEAQVKEAVELYTEIYRRL---AVPVLRSRRP--------- 204

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          D+  FP      D+ D I             A   D         
Sbjct: 205 ---------------DWDKFP----GADYTDAID------------AMMPD--------- 224

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R +++G + + G  ++      ++  DG+  Y     YGI + R +AA I 
Sbjct: 225 --------GRTLQIGTVHHLGDNFAKTFDIKYEAPDGEQRYAHQTCYGI-SERSIAATIS 275

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D KG++ P  +AP ++ +I I   K  ++V   AC  +  RL K G  V  D    +
Sbjct: 276 IHGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVLA-ACRDVQERLKKTGVKVEIDASDLR 334

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G+++   ++ G PL++ +G + + ++      R TG +E + L E+      +F 
Sbjct: 335 PGAKYYRWEMKGVPLRLEIGPRDLENNVAVSVRRDTGEKEQIPLPEIETGVLQKFE 390


>gi|67518071|ref|XP_658805.1| hypothetical protein AN1201.2 [Aspergillus nidulans FGSC A4]
 gi|40746638|gb|EAA65794.1| hypothetical protein AN1201.2 [Aspergillus nidulans FGSC A4]
          Length = 416

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 17/160 (10%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S   +E+GH F+ GT+YS  + A    ++     +QMG +GIG  R++ AV +S  D KG
Sbjct: 250 SQTTVELGHTFHLGTRYSEVLKARIVNSENDRVPMQMGCHGIGVSRMITAVADSLADAKG 309

Query: 338 IIWPDSVAPFKISLI--------NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           + WP  +AP+++ ++         +  +D +  D    I         DV  DD  +  G
Sbjct: 310 LNWPKIIAPWEVVIVPAPGNQEDALGVYDLLASDKASPI---------DVLLDDRDKTTG 360

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +   ADL+G+P+ V+VG+ + ++  +E++ R  GIR+D+
Sbjct: 361 WKLGDADLIGYPVIVVVGNGWKTNRILEVQCRRLGIRQDV 400



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD   E +  +Y  +  +Y R+F+ L +  +   A+SG +GG++SHEF  ++  
Sbjct: 1   MKDLYTFDDNVENALRTYESVKSAYTRLFNELKIPYLTAAADSGNMGGNMSHEFHFISSK 60

Query: 217 GE-TQVFCS 224
           GE T + C+
Sbjct: 61  GEDTLISCN 69


>gi|259488480|tpe|CBF87946.1| TPA: prolyl-tRNA synthetase (AFU_orthologue; AFUA_1G10750)
           [Aspergillus nidulans FGSC A4]
          Length = 427

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 17/160 (10%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S   +E+GH F+ GT+YS  + A    ++     +QMG +GIG  R++ AV +S  D KG
Sbjct: 261 SQTTVELGHTFHLGTRYSEVLKARIVNSENDRVPMQMGCHGIGVSRMITAVADSLADAKG 320

Query: 338 IIWPDSVAPFKISLI--------NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           + WP  +AP+++ ++         +  +D +  D    I         DV  DD  +  G
Sbjct: 321 LNWPKIIAPWEVVIVPAPGNQEDALGVYDLLASDKASPI---------DVLLDDRDKTTG 371

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +   ADL+G+P+ V+VG+ + ++  +E++ R  GIR+D+
Sbjct: 372 WKLGDADLIGYPVIVVVGNGWKTNRILEVQCRRLGIRQDV 411



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD   E +  +Y  +  +Y R+F+ L +  +   A+SG +GG++SHEF  ++  
Sbjct: 1   MKDLYTFDDNVENALRTYESVKSAYTRLFNELKIPYLTAAADSGNMGGNMSHEFHFISSK 60

Query: 217 GE-TQVFCS 224
           GE T + C+
Sbjct: 61  GEDTLISCN 69


>gi|327401992|ref|YP_004342831.1| Prolyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327317500|gb|AEA48116.1| Prolyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 482

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 163/406 (40%), Gaps = 70/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+Y W P G K    V   +RE  +R    E+  P L    +L  E      +  E+  
Sbjct: 36  KGLYVWYPFGFKIRQLVYGKLREIMDRDHD-EVYFPALIPETELGREGEHIKGFEDEVYW 94

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  M  +F+  I+S+ +LP   YQI   FR E +    ++R
Sbjct: 95  VTHGGLTPLDVKLALRPTSETAMYPMFKLWIRSHADLPLKVYQIVNTFRYETKHTRPLIR 154

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++   T E ++    K    Y   +  L +  + +R              
Sbjct: 155 LREITSFKEAHTVHRTFEEAEEQVRKAVGYYKEFYDFLAIPYLVIR-------------- 200

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP  +    FD ++                           
Sbjct: 201 -------------RPEWDKFPGAAYTIAFDTVMP-------------------------- 221

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R +++G + + G  ++     T++  DG+  +     YGI + R +AA+I 
Sbjct: 222 -------DGRTMQIGTVHHLGDNFARTFGITYEKPDGEHEFAHQTCYGI-SERCIAALIS 273

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D  G+I P  V+P +I +I +  K  ++   + CEKI+ RL   G  V  DD  E+ 
Sbjct: 274 IHGDDLGLILPFEVSPTQIVIIPVLYKGKEKEVLELCEKIFDRLKGFGYRVLLDDSDERP 333

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G+++   +L G  +++ VG K V+++ V +  R    +  +S+EE+
Sbjct: 334 GAKYYRWELKGAAMRIEVGPKEVAENAVVVSFRDERKKFKISVEEL 379


>gi|282164523|ref|YP_003356908.1| prolyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282156837|dbj|BAI61925.1| prolyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 474

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 177/431 (41%), Gaps = 78/431 (18%)

Query: 15  PRD--AEIASHKLMLRTGM-IHQHSKGIYSWLPLG---QKALDNVNAIIREEQNRTGAIE 68
           P+D  +E  +  LM+   M +    KGIY W P G   +K + N+   + +  ++     
Sbjct: 10  PKDNFSEWYNELLMMAQVMDVRYPIKGIYVWYPFGFSIRKKVYNMLRALMDVDHQECYFP 69

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKS 124
           M +P     +L  ES     +  E+  +        +  +   PT E  +  +++  I+S
Sbjct: 70  MLIP---KPELLKESEHIKGFEDEVYWVTHGGLSPLEIPLALRPTSETAIYPMYKLWIRS 126

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           + +LP   YQI   FR E +    ++R RE    K+A++   T E ++   ++    Y  
Sbjct: 127 HADLPLKLYQIVNTFRYETKQTRPLIRLREITSFKEAHTAHATWEDAEKQVHEAMDLYSD 186

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F +L   S+P      P                        D+  FP       FD ++
Sbjct: 187 FFTKL---SVPFVINKRP------------------------DWDKFPGADYTMAFDTLM 219

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                                             + R +++G + + GTK++     T++
Sbjct: 220 P---------------------------------NGRSLQIGTVHHLGTKFAKTYDITYE 246

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVC 361
              G+  YV    YGI   R +AAVI    D KG++ P + AP ++ +I I  K+  +  
Sbjct: 247 DDKGERQYVNQTCYGISE-RCIAAVIGIHGDNKGLVLPPNAAPTQVVIIPIVFKSGGEEV 305

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C K+ A L+  G     DD  E+ G+++   ++ G P ++ +G + + ++ V +  R
Sbjct: 306 LDVCRKVKAILNDSGITAVLDDTNERPGAKYYKWEMKGVPFRIEIGPRDIKNNAVMLVRR 365

Query: 422 LTGIREDMSLE 432
             G+++ + ++
Sbjct: 366 -DGVKQSIPMD 375


>gi|126466059|ref|YP_001041168.1| prolyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|126014882|gb|ABN70260.1| prolyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 493

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 166/408 (40%), Gaps = 69/408 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEML- 94
           KG+  W+P G KAL  +  I+      TG  E   PT+    ++ +   +   +G E   
Sbjct: 49  KGMNVWMPYGLKALRMIQKIMINLLEETGHEEAYFPTMIPESVFSKEKDFLQGFGGETFV 108

Query: 95  ---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
               +  + ++ +   PT E VM  ++   IK  ++LP   YQ+   FR E +    ++R
Sbjct: 109 VEGTMTKKFNEKLFVRPTSETVMYYMWNIWIKGRKDLPLKMYQVVNVFRYETKMTHPILR 168

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +   +A++   T E ++   N+    Y + F  L                 L   F
Sbjct: 169 VREIMSFIEAHTAHATSEEAEKQINEALSIYKKFFDSL-----------------LLPYF 211

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           IV     +T  F   ++        N DF                              +
Sbjct: 212 IVKTPPWDT--FAGAEY--------NYDF----------------------------ITA 233

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K     G+E+G +   G K++      F  +DG   +V    YG+   R + AVI 
Sbjct: 234 MPDGK-----GLELGSVINLGQKFARAFDIKFMDSDGVTKHVYQTCYGVSE-RTLGAVIA 287

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQI- 388
              D KG+  P  +AP ++ ++ I   D Q   +  +KI  +L K G   F DD  E   
Sbjct: 288 IHGDQKGLFLPPIIAPIQVVIVPIARRDEQDIIEYAKKISEKLKKAGIRTFLDDDPEHTP 347

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G ++   ++ G P ++ +G + ++++ V I  R    +  +S+ ++++
Sbjct: 348 GWKYYFWEMKGVPTRIEIGRRELNNNTVTIARRDGAKKITVSINDMVD 395


>gi|332796853|ref|YP_004458353.1| prolyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694588|gb|AEE94055.1| prolyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 481

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 168/411 (40%), Gaps = 98/411 (23%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL----------------W 80
           KG+  W+P G K   NV  IIR+  + TG  E+  P L    L                W
Sbjct: 34  KGMGVWMPYGFKIRQNVINIIRKFLDETGHEEVLFPLLIPEYLLRKESEHIKGFEGEVYW 93

Query: 81  VESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           V  G     G+E L  RLA R        PT E  +T +    IKSY+ LP  +YQI   
Sbjct: 94  VTKG-----GEEDLDIRLALR--------PTSEVAITYMESLWIKSYKELPKKYYQIVSI 140

Query: 139 FRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           FR E +    ++R RE    K+A++  ++ E ++    +    Y +IF  LG   IP   
Sbjct: 141 FRYETKATRPMIRLREVTTFKEAHTLHVSYEDAERQVKEAIEIYKKIFDTLG---IPY-- 195

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                         +L++  E   F           +E+T                  YA
Sbjct: 196 --------------ILSERPEWDRFAG---------AEHT------------------YA 214

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                     FD+L  +     R +++G + + G  ++  +    + ADG   Y    SY
Sbjct: 215 ----------FDTLMPD----GRALQIGTVHHLGQHFTKALDYKIQKADGSLDYPYQTSY 260

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH----DQVCRDACEKIYARLS 373
           GI   RV+A  I  + D  G I    +AP K+ +I I A     ++   + C++I  +LS
Sbjct: 261 GISD-RVIAVSIAVNGDDHGPILNPIIAPIKVVIIPIPAKTEEDNKRVENYCKEIQEKLS 319

Query: 374 KVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             G     D   E+  G +F   ++ G PL++ +G + V++  + IK R T
Sbjct: 320 SAGISAVVDSDKEKTPGEKFYYWEMKGVPLRIEIGLREVNNETITIKRRDT 370


>gi|46205115|ref|ZP_00049003.2| COG0442: Prolyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 260

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 1/105 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++HD  G+
Sbjct: 150 ARGIEIGHIFALGRKYAQALGLTVLDENGKQVVVTMGSYGIGVTRVLAALAEANHDDAGL 209

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            WP  VAP ++ ++       V  +A E++   LS  G +V +DD
Sbjct: 210 AWPAHVAPAQVHVVATGKDASVFEEA-ERLATELSGRGVEVIYDD 253


>gi|294495462|ref|YP_003541955.1| prolyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666461|gb|ADE36310.1| prolyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 478

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 173/415 (41%), Gaps = 69/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+Y W P G        +I+RE  +R     M    +   +   E+     + +E+  +
Sbjct: 37  KGLYVWHPFGFTIRKKTYSIMRELLDRDHEETMFPLLIPEHEFMKEAQHIKGFEEEVYWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                  +       PT E  +  +++  ++S+ +LP   YQI   FR E +    ++R 
Sbjct: 97  THGGTSPLEVNLALRPTSETAIYPMYKLWVRSHADLPLRLYQIVNTFRYETKHTRPLIRL 156

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE    K+A++   T E +    ++    Y   + RL   +IP+ +   P          
Sbjct: 157 REITSFKEAHTVHATWEDAASQIDEAMRIYKEFYRRL---AIPVLSSKRP---------- 203

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                         ++  FP        D  I+++S+                      +
Sbjct: 204 --------------EWDKFP------GADYTIAVDSL----------------------M 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+      R ++VG   + G  ++     T++ ++G+  Y     YG+ + R +AA+I +
Sbjct: 222 PD-----GRTLQVGTAHHLGDNFAKTFEITYEDSEGEQVYAHQACYGV-SERCLAALIST 275

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D KG++ P  VAP ++ +I I  K  ++V   ACE +   L   G  V  DD  ++ G
Sbjct: 276 HGDDKGLVLPPEVAPVQVVIIPIIFKKPEEVL-SACEMVAEDLKDAGIKVKIDDSDKRPG 334

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++   ++ G P+++ +G + + +    +  R TG +E + LE++ +     F++
Sbjct: 335 AKYYKWEMQGVPIRLEIGPRDLKNQAAMMARRDTGEKEQIPLEDISSTIKDTFAD 389


>gi|296423890|ref|XP_002841485.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637725|emb|CAZ85676.1| unnamed protein product [Tuber melanosporum]
          Length = 419

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 29/222 (13%)

Query: 225 KDFMD-FPIPS-----ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           K  MD FPIP+     +N +F   ++L  I      P                   K  +
Sbjct: 198 KKAMDYFPIPTISITPDNPEFGSSLNLLKIQGGDGCPKCGVG--------------KLKT 243

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              IE+GH F+ GT+Y++P+ A      G+   + MG +GIG  R++ A+ E   D  G+
Sbjct: 244 TGAIELGHTFHLGTRYTVPLRANVLNEAGEWKPMVMGCHGIGVSRMIPAIAEGYSDHNGL 303

Query: 339 IWPDSVAPFKISLI--NIKAHDQV-CRDACEKIYARLSKVG------CDVFWDDMGEQIG 389
            WP  VAP+ + L+  ++K +  V  ++  E +Y  L   G       DV  DD  + I 
Sbjct: 304 CWPRVVAPYDVVLVCGSMKKNAVVPPKEDIEAVYDVLVSKGLAGGTDVDVILDDRDKDIV 363

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +   A L+G+P+  I+G  +V   KVEI+ R TG R  + L
Sbjct: 364 WKIKDAVLVGYPIMCIMGKSWVDSKKVEIEVRKTGARLGVEL 405



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD T + +  +Y ++  +Y  +F  +GL  I   A+SG +GG +SHE+   + +
Sbjct: 1   MKDLYTFDATEDAALKTYRQVQGAYQALFEEIGLPYIHAEADSGNMGGSVSHEYHFPSLS 60

Query: 217 GETQVFCSKD 226
           GE  V    D
Sbjct: 61  GEDTVISCPD 70


>gi|167949162|ref|ZP_02536236.1| Prolyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 121

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 1/104 (0%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDAC 365
           GK   + MG YGIG  RVVAA IE  HD  GI WP S+APF++++  +K H     R+  
Sbjct: 4   GKAVVMTMGCYGIGVSRVVAATIEQHHDEHGISWPASIAPFQVAICPMKLHKSARVREPV 63

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           E++Y  L  +G +V  DD   + G  FA  +L+G P +V++G +
Sbjct: 64  EQLYTELQALGIEVLLDDRDVRPGFMFADMELIGIPHRVVIGER 107


>gi|212697112|ref|ZP_03305240.1| hypothetical protein ANHYDRO_01678 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675887|gb|EEB35494.1| hypothetical protein ANHYDRO_01678 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 134

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
           MGSYGIG  R ++A+IE ++D  GIIWP  VAPF+  I+L+N    DQ  +   EKIY  
Sbjct: 1   MGSYGIGITRSISAIIEQNYDDNGIIWPTKVAPFEAWITLVNKNKEDQ--KQLAEKIYES 58

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G +F   DL+G P ++ VG K  SD  VE   R       MS 
Sbjct: 59  LLDQGIEVMLDDRKERAGVKFNDRDLVGCPYRITVG-KDASDDIVEFSKRSDMENLKMSS 117

Query: 432 EEVI 435
           +E I
Sbjct: 118 DEAI 121


>gi|68475162|ref|XP_718299.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|68475355|ref|XP_718200.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46439957|gb|EAK99268.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46440060|gb|EAK99370.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
          Length = 169

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 81/145 (55%), Gaps = 4/145 (2%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +     E+S+  +   +
Sbjct: 29  QIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEIQFEEVSLSLISHKE 88

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  + R+D   +E+ +L    D+ ++     EE+   + +  ++SY+N P   YQI  K
Sbjct: 89  LWKLTNRWDQ--EEIFKLV--GDEYLLVPTAEEEITNYVKKQFLESYKNFPLALYQINPK 144

Query: 139 FRDELRPRFGVMRSREFLMKDAYSF 163
           FR+E RPR G++R +EFLMKDA  F
Sbjct: 145 FRNEKRPRGGLLRGKEFLMKDALFF 169


>gi|207744374|ref|YP_002260766.1| prolyl-trna synthetase (partial sequence ( central part) protein
           [Ralstonia solanacearum IPO1609]
 gi|206595779|emb|CAQ62706.1| prolyl-trna synthetase (partial sequence ( central part) protein
           [Ralstonia solanacearum IPO1609]
          Length = 328

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 53/80 (66%)

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G+MR REF MKDAYSFD   EG K SY KMF +Y RIF R GL    + A++G IGG  
Sbjct: 1   MGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDAYTRIFQRFGLAFRAVAADNGAIGGSG 60

Query: 207 SHEFIVLADTGETQVFCSKD 226
           SHEF V+A+TGE  +  S +
Sbjct: 61  SHEFHVIAETGEDAIVYSPE 80



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   A  RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 236 PEAEVADLRNVVEGDPSPDGKGSLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 295

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            MG YGIG  R++ A IE ++D +GIIWP S+A
Sbjct: 296 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIA 328


>gi|296241821|ref|YP_003649308.1| prolyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
 gi|296094405|gb|ADG90356.1| prolyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
          Length = 483

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 156/393 (39%), Gaps = 69/393 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG+  W+P G KAL     I+ +    TG  E   PT+    ++ +   +   +G E   
Sbjct: 39  KGMNVWMPYGLKALRLTQRILIQLLEETGHEEAYFPTMIPESVFSKEKDFLQGFGGETFV 98

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      R D+ +   PT E VM  ++   IK  ++LP   YQI   FR E +    ++R
Sbjct: 99  VEGTATKRFDERLFVRPTSETVMYYMWNMWIKGRKDLPVKMYQIVNVFRYETKMTHPILR 158

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +   +A++   + E ++    +    Y + F  L L                   F
Sbjct: 159 VREIMGFIEAHTAHASMEEAEAQIREALGIYKKFFDTLQLPY-----------------F 201

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           IV     +T  F   ++        N DF  +                            
Sbjct: 202 IVKTPPWDT--FAGAEY--------NYDFITV---------------------------- 223

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K     G+E+G +   G ++S      F   DG + YV    YG+ + R + AVI 
Sbjct: 224 MPDGK-----GLELGSVINLGQRFSRAFDIKFMDTDGVEKYVYQTCYGV-SERTLGAVIG 277

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQI 388
              D KG+ +P  +AP ++ ++ I K  +Q   D    +   L  +G  V  D D+    
Sbjct: 278 IHGDDKGLFFPPEIAPIQVVVVPIMKGVEQDVLDYSRNVEKHLKNLGVRVTVDMDLEHTP 337

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G ++   ++LG P ++ +G +  S + V I  R
Sbjct: 338 GWKYYYWEMLGVPTRIEIGKREASTNTVTIARR 370


>gi|255035014|ref|YP_003085635.1| threonyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254947770|gb|ACT92470.1| threonyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 647

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 171/416 (41%), Gaps = 65/416 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + + A + + Q+R G + +  P + S DL+V SG +D YGK+  + 
Sbjct: 266 QGLPLWLPKGAMLRERLQAFLSKAQSRAGYVPVITPHIGSKDLYVTSGHWDKYGKDSFQP 325

Query: 96  LADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +   N D+  +  P +     +I+++  +SY++LP  F +    +R E      G+ R R
Sbjct: 326 IKTPNLDEEYMLKPMNCPHHCEIYKTSPRSYKDLPLRFSEFGTVYRYEQSGELHGLTRVR 385

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + ++    L +F  LG               D S + I L
Sbjct: 386 GFTQDDAHIF-CRPDQVKEEFIRVIDLVLYVFKSLGF-------------NDYSAQ-ISL 430

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +  KD                       E W    +A  +   E+   ++ E
Sbjct: 431 RDPNNKEKYIGKD-----------------------EDWEKAESAIIEAAAERGLSTVTE 467

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y LP      + G+D + H  V +     
Sbjct: 468 LGEAAFYGPKLDFMVRDALGRKWQLGTIQVDYQLPQRFQLEYTGSDNQKHRPVMIHRAPF 527

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+M    A++  +  G+  +W  PD +A   IS        +   D  E+++ +L     
Sbjct: 528 GSMERFTAILIENTAGQFPLWLSPDQIAILPIS--------EKFADYAEEVFFQLQDHDI 579

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             F D   E+IG +   A++   P  +IVG K  ++ K+ ++ +  G    M++EE
Sbjct: 580 RGFVDHRDEKIGRKIRDAEVTKVPFMLIVGEKEAAEGKLSVRRKGEGDLGSMTIEE 635


>gi|225679653|gb|EEH17937.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 551

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 27/188 (14%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSAT-------FKGADGKDHY------------VQ 313
           EN   +   IE+ H F+ GT+YS  ++A+        +G+   +              ++
Sbjct: 360 ENSVETHTAIELAHTFHLGTRYSEVLNASVAIPSSILRGSLTTERTALAQSSSTVSVPLE 419

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL- 372
           MG +GIG  R++AAV ++  D KG+ WP  ++PF + +I+    D+      E++Y  L 
Sbjct: 420 MGCHGIGVSRMIAAVADTLADPKGLNWPRVISPFDVIIIS----DRELEKEAEQVYDTLM 475

Query: 373 --SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDM 429
              K   D   DD  + +  +   ADL+G+P+ +++G  +  DSK+EI+  RL   RE +
Sbjct: 476 ESRKADVDAIIDDREKSLAWKLRDADLIGYPVIIVIGKLWKRDSKLEIQCRRLENFRETV 535

Query: 430 SLEEVINY 437
           SL+++  Y
Sbjct: 536 SLQDLRFY 543



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 1/88 (1%)

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           K+RDE RPR G++R REF+MKD Y+FD + E +  +YN +  +Y+R+F+ L L  I   A
Sbjct: 85  KYRDEPRPRQGLLRGREFMMKDLYTFDYSAEKAIETYNAVKEAYIRLFNELKLPYIVAAA 144

Query: 198 ESGPIGGDLSHEFIVLADTGE-TQVFCS 224
           +SG +GG LSHEF +    GE T V CS
Sbjct: 145 DSGNMGGSLSHEFHLPNSKGEDTIVSCS 172


>gi|167752344|ref|ZP_02424471.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
 gi|167660585|gb|EDS04715.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
          Length = 651

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 165/433 (38%), Gaps = 69/433 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G    D +   +R  Q   G  ++  P + + +L+V SG Y  YGK+  + 
Sbjct: 260 QGLPLWLPKGAALRDRLEQFLRGVQKEYGYQQVITPHIGNKELYVTSGHYAKYGKDSFQP 319

Query: 97  ADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I+RS  +SY+ LP    +    +R E      G+ R R
Sbjct: 320 IHTPIEGEEYLLKPMNCPHHCEIYRSKPRSYKELPVRLAEFGTVYRYEQSGELHGLTRVR 379

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+     + K+    L IF  L   +   +              I L
Sbjct: 380 GFTQDDAHMF-VRPDQLLEEFEKVIDIVLYIFKTLKFDNYTAQ--------------ISL 424

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W    +A      EK  +++ E
Sbjct: 425 RDPNNKEKYIGSD-----------------------ENWEKAESAIIQAAKEKGLNTVIE 461

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP     T+KGAD K H  + +     
Sbjct: 462 YGEAAFYGPKLDFMVRDAIGRKWQLGTIQVDYNLPERFDLTYKGADDKMHRPIMIHRAPF 521

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+M    AV+     GK  +W  PD V    IS        +   D  EK+ A L+K   
Sbjct: 522 GSMERFVAVLLEHTGGKFPLWLSPDQVVVLPIS--------EKFNDYAEKVSAYLNKYDI 573

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               DD  E+IG +    +L   P  +IVG K  ++  V ++ +  G +  M+LE   +Y
Sbjct: 574 RSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLVSVRAQGEGDKGQMTLEAFRDY 633

Query: 438 ----ASHRFSNNR 446
                SH    N+
Sbjct: 634 MTDLVSHEIDANK 646


>gi|226324133|ref|ZP_03799651.1| hypothetical protein COPCOM_01911 [Coprococcus comes ATCC 27758]
 gi|225207682|gb|EEG90036.1| hypothetical protein COPCOM_01911 [Coprococcus comes ATCC 27758]
          Length = 481

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/444 (21%), Positives = 182/444 (40%), Gaps = 75/444 (16%)

Query: 1   MRRSKYFLPILQENPRDAEIAS-HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAII 57
           M + K F+  +    RD + A  +  ++R   +  +S  KG  ++LP G    + + A +
Sbjct: 1   MAKEKKFVQAI--TSRDEDFAQWYTDVVREAKLCDYSSVKGCLNYLPNGYAIWEKIQADL 58

Query: 58  REEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEE 112
            +    TG   + +P L   +L   ES   + +  E+  +     +   + M   PT E 
Sbjct: 59  DKRFKETGVENVYLPMLIPENLLQKESDHIEGFAPEVAWVTKGGLETLQEPMCIRPTSET 118

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           +  D++   ++SYR+LP  + Q    L++    RP    +RSREFL ++ ++   T E +
Sbjct: 119 LFCDLWARTVQSYRDLPKVWNQWCSVLRWEKTTRP---FLRSREFLWQEGHTIHATYEEA 175

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +     M    LR++  L   S+ +   SGP     S +F    DT              
Sbjct: 176 EQRTLTM----LRVYQELIRDSLAIPFVSGP--KTESEKFAGAQDT-------------- 215

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                                    Y   + +H+ K   S   +              +F
Sbjct: 216 -------------------------YTVEALMHDGKALQSATSH--------------FF 236

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G  +       +   + + H V   S+G+ + R++ A+I    D  G++ P  +AP +  
Sbjct: 237 GNAFPDAFDIKYLDKNNELHSVYETSWGL-STRIIGALIMVHGDDSGLVLPPRIAPVQTR 295

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +I I  H +   +   ++  RL K G  V  DD  +  G +F+  ++LG P ++ +G K 
Sbjct: 296 VIPIAQHKEGVLEKANELTERLKKAGYSVKIDDSEKSPGWKFSEQEMLGIPTRIEIGPKD 355

Query: 411 VSDSKVEIKHRLTGIREDMSLEEV 434
           +  ++V +  R T  +  +SL+E+
Sbjct: 356 IEQNQVVVVRRDTREKIVVSLDEI 379


>gi|268610123|ref|ZP_06143850.1| prolyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 480

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 162/417 (38%), Gaps = 78/417 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEML- 94
           KG     P G    +N+  I+      TG   + +P  +  + L  E    + +  E+  
Sbjct: 38  KGCMVIRPYGYAIWENIQRILDTTFKETGHENVCMPMFIPESLLQKEKDHVEGFAPEVAW 97

Query: 95  -------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRP 145
                  +L DR    +   PT E +  + + + I SYR+LP  + Q    +++    RP
Sbjct: 98  VTHGGNEKLEDR----LCVRPTSETLFCEHYSNIIHSYRDLPKLYNQWVSVVRWEKTTRP 153

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
               +RSREFL ++ ++   T E +     +M   Y                        
Sbjct: 154 ---FLRSREFLWQEGHTIHATAEEAIEETERMLNVY------------------------ 186

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                   AD      FC K      +  + T+ D      S        YA  + +H+ 
Sbjct: 187 --------AD------FCEKSLAMPVVKGKKTESDKFAGAVST-------YAIEALMHD- 224

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + ++ G   YFG  ++      +   + K       S+G+   R++
Sbjct: 225 -------------GKALQAGTSHYFGDGFAKAFGIEYTDKENKRVNPHQTSWGV-TTRLI 270

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            AVI +  D  G++ P +VAP ++ ++ I  H +   D   ++  RL K G  V  DD  
Sbjct: 271 GAVIMTHGDNSGLVLPPAVAPVQVVIVPIAQHKEGVLDKANELLERLKKAGVRVKLDDTD 330

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              G +FA  ++ G PL+V +G + + ++K  I  R  G + D SL+E+ +  + + 
Sbjct: 331 NSPGWKFAEYEMKGVPLRVEIGPRDIEENKCIIASRWNGEKADFSLDELESAVAQKL 387


>gi|282555147|gb|ADA82668.1| ProS [Candidatus Blochmannia vafer]
          Length = 77

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 53/77 (68%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR ++Y L  L+E P++ E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+E
Sbjct: 1  MRATQYLLTTLKEIPKNCETISHQLMLRSGMIRQISTGLYTWLPIGLRVLRKVENIVRDE 60

Query: 61 QNRTGAIEMSVPTLQSA 77
           N    IE+S+P +Q A
Sbjct: 61 MNNISFIEISMPIIQPA 77


>gi|226291392|gb|EEH46820.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 583

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 27/188 (14%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSAT-------FKGADGKDHY------------VQ 313
           EN   +   IE+ H F+ GT+YS  ++A+        +G+   +              ++
Sbjct: 392 ENSVETHTAIELAHTFHLGTRYSDVLNASVAIPSSILRGSLTTERTALAQSSSTVSVPLE 451

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL- 372
           MG +GIG  R++AAV ++  D KG+ WP  ++PF + +I+    D+      E++Y  L 
Sbjct: 452 MGCHGIGVSRMIAAVADTLADPKGLNWPRVISPFDVIIIS----DRELEKEAEQVYDTLM 507

Query: 373 --SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDM 429
              K   D   DD  + +  +   ADL+G+P+ +++G  +  DSK+EI+  RL   RE +
Sbjct: 508 ESRKADVDAIIDDREKSLTWKLRDADLIGYPVIIVIGKLWKRDSKLEIQCRRLENFRETV 567

Query: 430 SLEEVINY 437
           SL+++  Y
Sbjct: 568 SLQDLRFY 575



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 40/188 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G++  LPLG +  + +  +I +     GA ++S+ ++ S  LW +SGR      E  +  
Sbjct: 56  GVFHLLPLGLRVQEKLERLIDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFE 114

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           DR +   +  PTHEE +T +  S                                     
Sbjct: 115 DRKEARFLLAPTHEEEITSLVAS------------------------------------- 137

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
             A +  +     + +YN +  +Y+R+F  L L  I   A+SG +GG LSHEF +    G
Sbjct: 138 -SAGNIGMNQGLDRETYNAVKEAYIRLFDELKLPYIVAAADSGNMGGSLSHEFHLPNSKG 196

Query: 218 E-TQVFCS 224
           E T V CS
Sbjct: 197 EDTIVSCS 204


>gi|91772258|ref|YP_564950.1| prolyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121689406|sp|Q12ZC6|SYP_METBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91711273|gb|ABE51200.1| Prolyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 478

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 164/413 (39%), Gaps = 69/413 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG Y W P G     NV  IIR   ++     +    +   +   E+     + +E+  +
Sbjct: 37  KGSYVWYPFGFSIRRNVYDIIRGLLDKDHQETLFPLLIPENEFMKEAEHIKGFEEEVYWV 96

Query: 97  ADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +      D  +   PT E  +  ++R  ++S+ +LP   YQI   FR E +    ++R 
Sbjct: 97  LNGGTTPLDVKLALRPTSETAIYPMYRLWVRSHADLPLKLYQIVNTFRYETKHTRPLIRL 156

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE    K+A++   T + +     +    Y+  + RL   +IP+                
Sbjct: 157 REITSFKEAHTVHATWDEAASQVEEAIRLYIEFYKRL---AIPV---------------- 197

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                               +PS+   +D     +  +                   DSL
Sbjct: 198 --------------------LPSKRPSWDKFPGADYTI-----------------AVDSL 220

Query: 272 -PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+ K      ++VG   + G  ++      ++  DG+  Y     YG+ + R +A ++ 
Sbjct: 221 MPDGKT-----LQVGTAHHLGDNFAKTFDIKYEDVDGEQVYAHQTCYGV-SERCIATLLS 274

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +  D KG++ P  VAP ++ +I I   + +   +AC  + A L   G  V  DD  ++ G
Sbjct: 275 THGDDKGLVLPPEVAPTQVVIIPIIFKEPEAVLNACNDVKAELEAAGVRVTIDDSDKRPG 334

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           S++   ++ G PL++ +G + + +    +  R TG +E + L  + +    RF
Sbjct: 335 SKYYKWEMKGVPLRIEIGPRDLKNEAAMLARRDTGEKEQVPLASIKDEVLSRF 387


>gi|194246927|emb|CAQ76828.1| prolyl-tRNA synthetase [Campylobacter concisus]
          Length = 221

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 57/98 (58%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++GIEVGHIF  G KYS  M+AT+   +GK     MG YGIG  R++A +IE+SHD KG 
Sbjct: 119 SKGIEVGHIFQLGDKYSAAMNATYLDENGKAKPFLMGCYGIGISRLIAVMIEASHDEKGC 178

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           IW    APF + +I     D+       ++Y  L K G
Sbjct: 179 IWKKECAPFDVEIIISNLKDEAGVKFAFELYESLKKAG 216


>gi|322711570|gb|EFZ03143.1| prolyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 578

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R +E+GH FY G++YS P   +    + K    V+MG YGIG  R+  AV E   D +G+
Sbjct: 255 RALELGHTFYLGSRYSKPFELSVTLPNSKAPVPVEMGCYGIGVSRIFGAVAEHKADERGL 314

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADL 397
            WP ++APF+I +I     +    +  +K+ +  S   G D   DD  E  G +   AD+
Sbjct: 315 NWPRAIAPFEIVVIPTSGVNSQTLEFHDKLTSWSSTGPGFDAVLDDRKETFGWKMQDADM 374

Query: 398 LGFPLQVIVGSKFVSDSKVE 417
            G+P+ +++G  +    K++
Sbjct: 375 TGYPVTIVLGKAWRERGKLQ 394



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPR G++RSREF+MKD Y+FD + E +  +Y  +  +Y   F  + +  +   A SG +
Sbjct: 1   MRPRHGLLRSREFIMKDLYTFDTSFESAIETYKCVSKAYRAFFADMKIPILVAEASSGDM 60

Query: 203 GGDLSHEFIVLADTGETQVF 222
           GGD SHE+ +    GE +V 
Sbjct: 61  GGDYSHEYHLAHPIGEDRVI 80


>gi|171185819|ref|YP_001794738.1| prolyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|259511627|sp|B1Y963|SYP_THENV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170935031|gb|ACB40292.1| prolyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 487

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 159/408 (38%), Gaps = 69/408 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG Y W P G K   NV  +IR   + TG  E+  P     + +  ES     + KE+  
Sbjct: 39  KGAYVWRPYGMKLRRNVEELIRRVHDETGHEEVLFPVFIPYEFFGKESQHIRGFEKEVFW 98

Query: 96  LADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++   +  + ++  PT E  +  + +  I+ Y++LP   YQI   FR E +    ++R R
Sbjct: 99  VSKGGEGGERLVLRPTSETAIMPMVKLWIQDYKDLPLRLYQIVSVFRAETKMTHPMIRLR 158

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           E  M K+A++  +  E ++    +    Y RIF  + L  +                   
Sbjct: 159 EISMFKEAHTVHVDREDAERQVREAVEIYKRIFDEMCLAYM------------------- 199

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                   +    D+  F        FD ++     ++  TA Y  T+            
Sbjct: 200 --------INKRPDWDKFAGAEYTIAFDTVLPDGRTLQIGTAHYLGTN------------ 239

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                                ++     T+  ADG        SYGI    + A +I   
Sbjct: 240 ---------------------FTRVFEVTYLDADGTRKLAHTTSYGISERSIAAMLITHG 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGEQI- 388
            DG G   P  +AP +I+++ I   D+   +     E++ A L   G  +  DD  ++  
Sbjct: 279 DDG-GTTLPPKLAPIQIAVVPIYYSDEEMPLVMKFVEEVVAALKGAGLRLHVDDRRDKTP 337

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G +F   +L G PL++ VG + V   +V +  R T  +  ++L E+++
Sbjct: 338 GWKFYYWELKGVPLRLEVGKRDVEKRQVVVTRRDTLEKYAVALGELVD 385


>gi|325958767|ref|YP_004290233.1| prolyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325330199|gb|ADZ09261.1| Prolyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 469

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 169/410 (41%), Gaps = 77/410 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG++ WLP G K   +   I++   ++    E+  P L   D L  E+     + +E+  
Sbjct: 25  KGMHVWLPQGFKIRKHTLEILKTILDKDHE-EVMFPLLIPEDELAKEAIHVKGFEEEVYW 83

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        +K +   PT E  M  +F   ++++ +LP  +YQ+   FR E +    ++R
Sbjct: 84  VTHGGLTELNKKLALRPTSETAMYPMFSLWVRNHSDLPMRYYQVVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++   + E ++    +    Y + F  LG   IP      P         
Sbjct: 144 VREITTFKEAHTVHSSAEETEEQVKEALRIYRQFFDSLG---IPYTVSKRP--------- 191

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP       FD +                            
Sbjct: 192 ---------------EWDKFPGALYTMAFDTL---------------------------- 208

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           LP+ K      +++G +   G  ++     T++ A+G   YV    YG+   RV+A++I 
Sbjct: 209 LPDGKT-----LQIGTVHNLGQTFAKTFDITYETAEGNHEYVYQTCYGLSD-RVIASLIG 262

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARL-SKVGCDVFWDDMGEQ 387
              D  G+  P  VAP+ + ++ I  K   +V  D C+K+  +L S++   V++DD   +
Sbjct: 263 IHGDDSGLCLPPDVAPYHVVIVPIIFKKGGEVVIDFCKKLQEKLESELNLRVYFDDRDIR 322

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            G ++   ++ G PL++ VG + + +      H++   R +   +E+I+Y
Sbjct: 323 AGKKYYEWEMRGIPLRLEVGPRDIEN------HKIVTFRRESKEKEIIDY 366


>gi|256422752|ref|YP_003123405.1| threonyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256037660|gb|ACU61204.1| threonyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 646

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/427 (21%), Positives = 166/427 (38%), Gaps = 61/427 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G    + + + +++ Q  +G + +  P + + +L++ SG Y+ YGK+  +  
Sbjct: 262 GLPLWLPKGAMLRERLQSFLQKAQIESGYMPVVTPHIGNKNLYITSGHYEKYGKDSFQPI 321

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 +  +  P +     +I++S  KSY++LP  F +    +R E      G+ R R 
Sbjct: 322 HTPEEGEEFMLKPMNCPHHCEIYKSSPKSYKDLPVRFAEFGTVYRYEQHGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+    L +F  L                          
Sbjct: 382 FTQDDAHLF-CRPDQVKEEFCKVIDLVLYVFQSL-------------------------- 414

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                      +F D+       D +D        E W     A  +   EK   ++ E 
Sbjct: 415 -----------NFTDYTAQISLRDQEDRAKYIGSDENWNLAEQAIIESAAEKGLKTVVEY 463

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + GAD + H  V +     G
Sbjct: 464 GEAAFYGPKLDFMVKDALGRKWQLGTIQVDYNLPERFELEYVGADNQKHRPVMIHRAPFG 523

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++    AV+     GK  +W   + P ++ ++ I   +Q   +  EK+   L  V     
Sbjct: 524 SLERFIAVLIEHCGGKFPLW---LTPTQVKILPISDKNQ---EYAEKVAELLKNVEIRAE 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+IG +    +L   P  +++G K  ++SKV ++ +  G    M +++ I     
Sbjct: 578 IDDRSEKIGKKIRETELAKIPYMLVIGEKEAAESKVAVRRQAKGDLGAMDIDQFIALVKE 637

Query: 441 RFSNNRP 447
              + +P
Sbjct: 638 EVVSRKP 644


>gi|320100286|ref|YP_004175878.1| prolyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319752638|gb|ADV64396.1| prolyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 480

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 169/425 (39%), Gaps = 73/425 (17%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H ++   G+I      KG+  W+P G KAL     I+ +    TG  E   PT+    ++
Sbjct: 20  HSVLKEAGIIDIRYPVKGMNVWMPYGLKALRLTQRILMDLLEETGHQEAYFPTMVPESVF 79

Query: 81  V-ESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E      +G E       +  + ++ +   PT E VM  ++   IK  ++LP   YQ+
Sbjct: 80  SREKDFLKGFGGETFVVEGTVTRKFNERLFVRPTSETVMYYMWNMWIKGRKDLPLKMYQV 139

Query: 136 QLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E +    ++R RE +   +A++   T E ++   ++    Y   F+RL L    
Sbjct: 140 VNVFRYETKMTHPILRVREIMGFIEAHTAHATMEEAEKQISEAIAIYKEFFNRLQLPY-- 197

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                          FIV     +T  F   ++        N DF  +            
Sbjct: 198 ---------------FIVKTPPWDT--FAGAEY--------NYDFITV------------ 220

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                           +P+ K     G+E+G +   G K++      +   DG + +V  
Sbjct: 221 ----------------MPDGK-----GLELGSVINLGQKFAKAFEIKYMDTDGVEKHVYQ 259

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARL 372
             YG+ + RV+ AVI    D  G+ +P  +AP ++ ++ +     +QV   A  K+   L
Sbjct: 260 TCYGV-SERVLGAVIGIHGDETGLFFPPDIAPIQVVIVPVMKPGENQVLEYAF-KVSNIL 317

Query: 373 SKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G  VF D D     G ++   ++ G P ++ VG K +  S V I  R    +  + L
Sbjct: 318 KAHGVRVFVDTDQEHTPGWKYYYWEMKGVPTRIEVGRKELDASTVTIARRDKREKHVVKL 377

Query: 432 EEVIN 436
           EE ++
Sbjct: 378 EEAVD 382


>gi|288932452|ref|YP_003436512.1| prolyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894700|gb|ADC66237.1| prolyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 475

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 165/406 (40%), Gaps = 70/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+Y W P G K    V   +RE  +R    E+  PTL    +L  ES     +  E+  
Sbjct: 29  KGLYVWFPFGFKIRRLVYDKLREIMDRDHE-EVYFPTLIPETELGKESEHIKGFEDEVFW 87

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     ++ D  +   PT E  M  +F+  I+S+ +LP   YQI   FR E +    ++R
Sbjct: 88  VTHGGLEKLDVKLALRPTSETAMYPMFKLWIRSHADLPLRVYQIVNVFRYETKHTRPLIR 147

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++     E ++ +       Y   +  L +  + +R              
Sbjct: 148 LREITSFKEAHTAHRNYEEAEENVRLAVSLYKEFYDFLAIPYLILR-------------- 193

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP       FD ++     ++  T        VH+  L D+
Sbjct: 194 -------------RPEWDKFPGADYTIAFDTVMPDGRTMQIGT--------VHH--LADN 230

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             +                F  KY  P        DG   YV    YGI + R +AA+I 
Sbjct: 231 FAKT---------------FDIKYETP--------DGDHAYVHQTCYGI-SERCIAALIS 266

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D  G++ P  V+P +I +I I  K  ++   D  +++Y +L   G  V  DD  E+ 
Sbjct: 267 IHGDDLGLVLPFEVSPVQIVIIPILYKGKEEEVMDLSKRVYEKLKGYGFRVVLDDTDERP 326

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G+++   +L G P+++ +G K    ++  +  R   +++ +S+EE+
Sbjct: 327 GAKYYKWELKGVPIRIEIGPKEAERNEAVVSFRDEKVKKSLSVEEL 372


>gi|313674626|ref|YP_004052622.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Marivirga
           tractuosa DSM 4126]
 gi|312941324|gb|ADR20514.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Marivirga
           tractuosa DSM 4126]
          Length = 654

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 174/428 (40%), Gaps = 62/428 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G    D +   +++ Q + G   +  P + + +L++ SG Y+ YGK+  R  
Sbjct: 265 GLPLWLPKGTMLRDRLENFLKKAQVKAGYQPVITPHIGNKELYITSGHYEKYGKDSFRPI 324

Query: 98  -------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
                   ++D+  +  P +     +I+++  +SY++LP    +    +R E      G+
Sbjct: 325 AAPSDDDSKSDEEYLLKPMNCPHHCEIYKTKPRSYKDLPLRLAEFGTVYRYEQSGELHGL 384

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK----SIPMRAESGP---I 202
            R R F   DA+ F   P+  K  + K+    L +F+ LG +     + +R        I
Sbjct: 385 TRVRSFTQDDAHIF-CRPDQVKEEFIKVIDLVLFVFNSLGFEDFVTQVSLRDPDNREKYI 443

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           GGD       + D  E  +  +         +E      +I L        A Y    D 
Sbjct: 444 GGD------EVWDKAEKSIIEA---------AEEKGLKTVIELGE-----AAFYGPKLDF 483

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               + D+L        R  ++G I      Y+LP      + GAD   H  V +     
Sbjct: 484 M---VKDAL-------GRSWQLGTI---QVDYNLPERFKLEYVGADNSKHRPVMIHRAPF 530

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+M    AV+     G   +W  P+ VA   IS        +   D   K+Y+ L     
Sbjct: 531 GSMERFVAVLIEHCAGNFPLWLSPEQVAVLPIS--------EKYADYANKVYSELEANDI 582

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             F D   E+IG +   A++   P  +IVG +  ++ KV I+    G   +MSLE+  ++
Sbjct: 583 TGFIDHRDEKIGRKIRDAEINKIPYMLIVGEQEAAEEKVSIRKHGEGDVGNMSLEDFKSF 642

Query: 438 ASHRFSNN 445
            + + +++
Sbjct: 643 FNQKVTDS 650


>gi|124507052|ref|XP_001352123.1| prolyl-t-RNA synthase, putative [Plasmodium falciparum 3D7]
 gi|23505153|emb|CAD51934.1| prolyl-t-RNA synthase, putative [Plasmodium falciparum 3D7]
          Length = 579

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 24/234 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F  I  +N +     + +L+ R   I +   GIY+ LPLG + ++ +   + +   +  +
Sbjct: 65  FNRIFNDNIKSNGDKTSELLQRANYI-RDVNGIYNILPLGFRVINKIIDFLNKHLEKLNS 123

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDKA-------------MIYGPT 109
             MS+  LQ+  LW  S R   Y  E L +      +NDK+              I  PT
Sbjct: 124 HAMSLSILQAKKLWNISDRSKLYSDEFLYVYKQKQSKNDKSSEESLKKKIEDDGYILSPT 183

Query: 110 HEE----VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
            EE    ++  I+  +I + + LP   +Q   KFR+E R    + +S+EFLMKD YSF  
Sbjct: 184 CEESSLSLINQIYNENI-TIKCLPLLIHQYNYKFRNEKRFEKSLFKSKEFLMKDGYSFHS 242

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
             +    +Y K    Y  IF  L L  +I  + +   +    SHEF VL+  G+
Sbjct: 243 NEKCLNETYEKYKECYKNIFEELKLSFNIIKKRKKDKMNALESHEFQVLSRDGK 296



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E  HIF  G  YS  +   +     +   + MGSYGIG  R++  +IE+ +D +GI  P 
Sbjct: 299 EAAHIFKLGDYYSNKLDIKYLDKKNEKKNILMGSYGIGIYRLLYFLIENFYDEEGIKLPQ 358

Query: 343 SVAPFKISLI 352
            VAPF + LI
Sbjct: 359 QVAPFSVYLI 368


>gi|282555140|gb|ADA82663.1| ProS [Candidatus Blochmannia sayi]
          Length = 76

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 51/75 (68%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P++    SH+LMLR G+I Q S G+Y+WLP G + L  +  IIREE
Sbjct: 1  MRISQYLLATLKETPKNCTTISHQLMLRAGLIRQVSSGLYTWLPTGLRVLRKIENIIREE 60

Query: 61 QNRTGAIEMSVPTLQ 75
           ++  AIE+S+P +Q
Sbjct: 61 MSKINAIEISMPIVQ 75


>gi|307595133|ref|YP_003901450.1| prolyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307550334|gb|ADN50399.1| prolyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 489

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 157/394 (39%), Gaps = 68/394 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG Y W P G +    V + +R   + TG  E+  P     + +  ES     +  E+  
Sbjct: 42  KGAYVWRPYGMRIRRLVESYVRLVHDETGHQEVLFPVFIPYEFFSKESEHIRGFENEVFW 101

Query: 96  LAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++     ++ ++  PT E  M  +F+  IK + +LPF  YQI   FR E +    ++R R
Sbjct: 102 VSKGGTGEERLVLRPTSETAMMPMFKLWIKDHTDLPFKVYQIVSVFRAETKATRPMIRLR 161

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           E  M K+A++     E ++    +    Y +IF  L   SIP      P     +     
Sbjct: 162 EISMFKEAHTAHANREDAERQIKEAMEIYKKIFDYL---SIPYLISQRPEWDKFAGAVYT 218

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +A                        FD ++     ++  T  Y  T   +  ++FD   
Sbjct: 219 IA------------------------FDTVMPDGKTMQIGTVHYLGT---NFSRVFD--- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                               +Y  P         G   YV   SYGI   RV+AA+I   
Sbjct: 249 -------------------VRYLTP--------SGDWEYVHTTSYGISE-RVIAAMIAVH 280

Query: 333 HDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-G 389
            D KG+  P +VAP ++ ++ I  K  ++      + I   L+  G  V  DD  ++  G
Sbjct: 281 GDDKGLALPPNVAPIQVVIVPIMYKGTEEAIMREVKSITEELTNAGIRVKVDDRTDKTPG 340

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            ++   +++G PL++ +G K V + +V +  R T
Sbjct: 341 WKYNYWEMMGVPLRIEIGPKDVENRQVVLARRDT 374


>gi|282555151|gb|ADA82671.1| ProS [endosymbiont of Camponotus pudorosus]
          Length = 77

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 50/77 (64%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR ++Y L  L+E P+  E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+ 
Sbjct: 1  MRATQYLLTTLKEKPKSCETISHQLMLRSGMIRQISSGLYTWLPIGLRVLRKVENIVRDA 60

Query: 61 QNRTGAIEMSVPTLQSA 77
           N  G IE+ +P  Q A
Sbjct: 61 MNNIGFIEILMPMTQPA 77


>gi|317054829|ref|YP_004103296.1| prolyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315447098|gb|ADU20662.1| prolyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 480

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/417 (19%), Positives = 161/417 (38%), Gaps = 70/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  I+       G   + +P  +  + L  E    + +  E+  
Sbjct: 38  KGCMVIRPYGYAIWENIQKILDSRFKALGHENVCMPMFIPESLLQKEKDHVEGFAPEVAW 97

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    +++ +  +   PT E +  + + + + SYR+LP  + Q    +++    RP    
Sbjct: 98  VTHGGSEKLEDRLCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVVRWEKTTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +RSREFL ++ ++   TPE +     +M   Y                            
Sbjct: 155 LRSREFLWQEGHTIHETPEEAIEETERMLNCY---------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               AD      FC KD     +    TD D             A YA  + +H+     
Sbjct: 187 ----AD------FCEKDLAMPVVKGRKTDSDKFAGAE-------ATYAIEALMHD----- 224

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     + ++ G   YFG  ++      F G D K  +    S+G+   R++ A+I
Sbjct: 225 ---------GKALQAGTSHYFGDGFAKAFGIQFTGRDNKLAFPHQTSWGV-TTRLIGAII 274

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D  G++ P +VAP +  ++ ++   +   +   ++Y +L   G  V  DD  +  G
Sbjct: 275 MTHGDDNGLVLPPAVAPIQAVIVPVQQFKEGVLEKANEVYEQLKAAGIRVKLDDSDQSPG 334

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +FA  ++ G P+++ +G K + + +  I  R    +    L E++   + +    R
Sbjct: 335 WKFAEYEMKGVPVRIELGPKDIENGQCVIVTRHDREKTFTPLTELVETVNAKLEAVR 391


>gi|325279133|ref|YP_004251675.1| threonyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324310942|gb|ADY31495.1| threonyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 650

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 159/418 (38%), Gaps = 65/418 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G    D +   +R+ Q + G  ++  P + + +L+  SG Y  YGK+  ++ 
Sbjct: 263 GLPMWLPKGAMLRDRLEGFLRKVQKKYGYQQVITPHIGNVNLYKTSGHYQKYGKDSFQVI 322

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              +  +  +  P +     +I++   +SY++LP  F +    +R E      G+ R R 
Sbjct: 323 TTPQEGEEFMLKPMNCPHHCEIYKFKPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRG 382

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  TP+  K  + K+      IF  L  K    +              + L 
Sbjct: 383 FTQDDAHLF-CTPDQLKEEFKKVIDIIFTIFKALDFKDFTAQ--------------VSLR 427

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D   T+ +   D                       E W     A  +   EK   +  E 
Sbjct: 428 DPKNTEKYIGTD-----------------------ENWEKAERAIIEAAEEKGLKTTVEL 464

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + GAD   H  V +     G
Sbjct: 465 GEAAFYGPKLDFMVKDAIGRKWQLGTIQVDYNLPERFDLEYTGADNLKHRPVMIHRAPFG 524

Query: 321 AMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +M    AV+     GK  +W  PD V    IS        +   D  +K+   L+     
Sbjct: 525 SMERFVAVLIEHTGGKFPLWLAPDQVVVMPIS--------EKFNDYAQKLSDLLNNSDIR 576

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              DD  E+IG +    +L   P  +IVG   ++++ V ++ +  G    MS+E+ I+
Sbjct: 577 TVLDDRNEKIGRKIRDNELKKIPYLLIVGENEMNNNTVSVRRQGQGDMGTMSVEDFIS 634


>gi|261416474|ref|YP_003250157.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372930|gb|ACX75675.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 695

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 172/417 (41%), Gaps = 50/417 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I  HS G+  W P G K ++ +   IR + +R G +E+  P + +  LW++SG  D Y +
Sbjct: 315 IEDHSPGMVFWHPKGTKMVNALKDYIRGKIDRRGYLEVITPEIVNKTLWIKSGHADKYNE 374

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M +     D  M   P +      IF + ++S+R+LP    +     R E      G+M
Sbjct: 375 NMFKTL-AGDVEMAVKPMNCPCHIQIFNTGLRSWRDLPMRLAEFGKCHRYEPAGTMHGLM 433

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP---IGGDL 206
           R R F+  DA+ F    E    S    F + ++ I+H  G   I ++  + P   +G D 
Sbjct: 434 RVRGFVQDDAHIF--CTEDQIASEVADFCALVKEIYHDFGFDDIVVKFSTRPEKRVGSD- 490

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 + D  E  +            +E T    +  L+ I+      +      +  K
Sbjct: 491 -----EIWDKAEAAL------------AEAT---KLAGLDYILNPGEGAF------YGPK 524

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
           L  +L   K    R  + G I      ++LP  + A + G D + H  V +    +G++ 
Sbjct: 525 LEFTL---KDSLGRDWQCGTI---QVDFNLPQRLGAEYVGKDNQKHIPVMLHRAAVGSIE 578

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G   +W   +AP +  ++ I    +   D  +++   L   G  V  D+
Sbjct: 579 RFLGILIEEFMGDFPLW---LAPVQARVLPIS---EKFVDYAKQVEKELVNAGVRVEVDE 632

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             E++G +    +L   P  +IVG K V+D  V ++ R  G +  M++ + +   + 
Sbjct: 633 SNEKLGYKIRQCELQKVPYLLIVGEKEVADGVVSVRKRKDGDKGSMTVAQFLEMTAE 689


>gi|229916382|ref|YP_002885028.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|259516484|sp|C4L461|SYT_EXISA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229467811|gb|ACQ69583.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 647

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 176/413 (42%), Gaps = 39/413 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I +++   G   +  P L S DL+  SG +D Y  +M   
Sbjct: 266 QGLPMWLPKGASIRRTVERYIVDKELELGYQHVYTPVLGSVDLYKTSGHWDHYQDDMFPK 325

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++   +SYR LP    ++    R E+     G+ R R  
Sbjct: 326 MEMDNEELVLRPMNCPHHMTIYKHEPRSYRELPLRIAELGGMHRYEMSGALTGLQRVRYM 385

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
           ++ D ++F +TPE  K  +  +      ++   G+K    R +   P   +   +   + 
Sbjct: 386 VLNDGHTF-VTPEQMKQEFKDIVHLIQEVYADFGIKDYRFRLSYRDPADKEKYFDNDAIW 444

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  ++Q+  + D ++ P       F+         E   A Y    DV   ++  +L + 
Sbjct: 445 EMAQSQLKETMDELELPY------FE--------AEGEAAFYGPKLDV---QVRTALGKE 487

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGKDH   +   G+ +   R VA +IE  
Sbjct: 488 ETLSTVQLD----FLLPERFDL----TYTGPDGKDHRPIVLHRGVVSTMERFVAYLIEEY 539

Query: 333 HDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              KG  +P  +AP ++ LI +   HD+   +    + A L K G  V  D   E++G +
Sbjct: 540 ---KG-AFPTWLAPVQVKLIPVSHVHDEYVAE----VKAELVKRGVRVETDLRDEKLGYK 591

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              A +   P+ +++G K   +  V I+      +   SL+E I   +   +N
Sbjct: 592 IREAQMKKIPMTLVLGDKERDERAVNIRRYGQQEQVSASLDEFIASLTDEIAN 644


>gi|291522045|emb|CBK80338.1| prolyl-tRNA synthetase, family I [Coprococcus catus GD/7]
          Length = 477

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 168/418 (40%), Gaps = 73/418 (17%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVE 82
           ++++ G+I   S KG  +  P G    +N+   + +    TG   + +P  +  + L  E
Sbjct: 25  VVVKAGLIGYTSVKGCMAIKPAGYAIWENIQHELDKRFKATGVENVYMPMFIPESLLQKE 84

Query: 83  SGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-- 136
               + +  E+  +     +   + M   PT E +  D +   I+SYR+LP  + Q    
Sbjct: 85  KDHVEGFAPEVAWVTHGGLNELQERMCVRPTSETLFCDFYAKEIQSYRDLPKMYNQWCSV 144

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           +++  E RP    +RSREFL ++ ++   T E SK    +M   Y               
Sbjct: 145 VRWEKETRP---FLRSREFLWQEGHTAHATAEESKERTEQMLNLY--------------- 186

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                            AD      FC +      I  + T+ +             A Y
Sbjct: 187 -----------------AD------FCEQVLAMPVIRGQKTEKEKFAGAE-------ATY 216

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              + +H+ K   S              G    FG  ++      +   + K  YV   S
Sbjct: 217 TIEALMHDGKALQS--------------GTSHNFGDGFARAFGIQYTDKENKLQYVHQTS 262

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +G+   R++ A+I    D  G++ P  +AP ++ +I I  H +   +  E++  RLS  G
Sbjct: 263 WGM-TTRLIGAIIMVHGDDNGLVLPPMIAPTQVIVIPIAQHKEGVLEKAEELRDRLS--G 319

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             V  D    + G +FA A++ G P++V +G K +  ++  +  R TG +  +SL+E+
Sbjct: 320 FRVKLDATDNKPGWKFAEAEMRGIPVRVEIGPKDIEANQAVLARRDTGEKIVVSLDEL 377


>gi|302325997|gb|ADL25198.1| threonine--tRNA ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 645

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 172/417 (41%), Gaps = 50/417 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I  HS G+  W P G K ++ +   IR + +R G +E+  P + +  LW++SG  D Y +
Sbjct: 265 IEDHSPGMVFWHPKGTKMVNALKDYIRGKIDRRGYLEVITPEIVNKTLWIKSGHADKYNE 324

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M +     D  M   P +      IF + ++S+R+LP    +     R E      G+M
Sbjct: 325 NMFKTL-AGDVEMAVKPMNCPCHIQIFNTGLRSWRDLPMRLAEFGKCHRYEPAGTMHGLM 383

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP---IGGDL 206
           R R F+  DA+ F    E    S    F + ++ I+H  G   I ++  + P   +G D 
Sbjct: 384 RVRGFVQDDAHIF--CTEDQIASEVADFCALVKEIYHDFGFDDIVVKFSTRPEKRVGSD- 440

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 + D  E  +            +E T    +  L+ I+      +      +  K
Sbjct: 441 -----EIWDKAEAAL------------AEAT---KLAGLDYILNPGEGAF------YGPK 474

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
           L  +L   K    R  + G I      ++LP  + A + G D + H  V +    +G++ 
Sbjct: 475 LEFTL---KDSLGRDWQCGTI---QVDFNLPQRLGAEYVGKDNQKHIPVMLHRAAVGSIE 528

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G   +W   +AP +  ++ I    +   D  +++   L   G  V  D+
Sbjct: 529 RFLGILIEEFMGDFPLW---LAPVQARVLPIS---EKFVDYAKQVEKELVNAGVRVEVDE 582

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             E++G +    +L   P  +IVG K V+D  V ++ R  G +  M++ + +   + 
Sbjct: 583 SNEKLGYKIRQCELQKVPYLLIVGEKEVADGVVSVRKRKDGDKGSMTVAQFLEMTAE 639


>gi|146302666|ref|YP_001197257.1| prolyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|259511597|sp|A5FA31|SYP_FLAJ1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146157084|gb|ABQ07938.1| prolyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 492

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 153/357 (42%), Gaps = 65/357 (18%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  GK M+    + ++ +I  PT E ++   ++  ++SYR+LP    Q     R E+R R
Sbjct: 102 DRPGKLMVDPNAKLEEELIVRPTSEAIIWSTYKGWVQSYRDLPLLINQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R+ EFL ++ ++   T + +     KM   Y          +IP            
Sbjct: 162 L-FLRTAEFLWQEGHTAHATKDEAIEESEKMMNVYADFAE--NFMAIP------------ 206

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
               +V     ET+ F                 D+   + ++++   A  A TS      
Sbjct: 207 ----VVKGFKTETERFAGA--------------DETYCIEALMQDGKALQAGTS------ 242

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                                 + G  ++      F  A+GK  +V   S+G+ + R++ 
Sbjct: 243 ---------------------HFLGQNFAKAFDVKFANAEGKQEHVWGTSWGV-STRLMG 280

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDVFWDD 383
           A+I +  D +G++ P ++AP ++ ++ I K  +Q+ +   A  ++ A+L K+   V +DD
Sbjct: 281 ALIMTHSDDQGLVLPPNLAPIQVVIVPIHKTDEQLAQITAAVNELTAKLRKLKISVKYDD 340

Query: 384 MGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              Q  G +FA  +L G P+++ VG K + +   E+  R    +E ++ E+++++ +
Sbjct: 341 RTTQKPGFKFAEWELKGVPVRIAVGPKDLENGTFEVARRDNLSKEVVAAEKIVDHVN 397


>gi|168178808|ref|ZP_02613472.1| putative prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226950957|ref|YP_002806048.1| putative prolyl-tRNA synthetase [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670058|gb|EDT82034.1| putative prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226841905|gb|ACO84571.1| putative prolyl-tRNA synthetase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 545

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 112/227 (49%), Gaps = 26/227 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT--DIF 118
             + G  ++S+P                Y   +  ++++N+  ++   ++EE ++  +  
Sbjct: 61  SKKIGGSQISIP----------------YVNNLEEVSEKNNGFIL--NSNEETLSFINFL 102

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +S + SY+ LP  FY+   +F  + +   G+M  R+ L ++ +   L  E  K +  ++ 
Sbjct: 103 KSSVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQIL-REYFYMVLDGENDKFNKKELI 161

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             Y  IF  + L+   +  E      D + +FI+  + G+ ++   K
Sbjct: 162 KLYKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLRIVACK 203



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ATF    GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D
Sbjct: 400 CATFIDNKGKSKPFTIYKGFMDIYKIISWTIEQNKDELGIVWPMETSAFKVIVTIANVKD 459

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEI
Sbjct: 460 EQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEI 518

Query: 419 KHRLTGIREDMSLEEV 434
           K R +  ++++ ++++
Sbjct: 519 KLRNSKEKKEIPIDQL 534


>gi|170290808|ref|YP_001737624.1| prolyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174888|gb|ACB07941.1| prolyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 479

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 169/419 (40%), Gaps = 96/419 (22%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL----------------QSADLW 80
           KG+Y WLP G + ++N+ +I+     +TG   +  P++                Q +  W
Sbjct: 37  KGMYVWLPYGYELMENIMSIMERLLRQTGHKRVYFPSIVPESVLSREFRFIKGFQDSVFW 96

Query: 81  VES-GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           +   GR D+  K  LR            PT E +M ++    I SYR+LP   YQI   +
Sbjct: 97  ITKLGRQDAPEKLALR------------PTSEAIMYEVLSRWISSYRDLPIRIYQIAPIY 144

Query: 140 RDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E +    ++R RE    K+ ++F  T E +    N                       
Sbjct: 145 RYETKATRPMLRVREVAFFKEGHTFHATYEEAVEQVN----------------------- 181

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                                +V+  K F           +D+++    +V+  T P+  
Sbjct: 182 --------------------LEVWIYKSF-----------YDELLVPYIVVK--TLPWDT 208

Query: 259 -TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
               ++N  +   +P+ K      +E+G    FG  ++     T+   DG+   V   S+
Sbjct: 209 FPGALYNYDIVTIMPDGK-----ALELGSAINFGDLFARTYDLTYMDEDGQRKNVNTTSF 263

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKV 375
           GI   R +AAVI    D +G+  P  +AP +I ++ I  K +++   +   ++ + L + 
Sbjct: 264 GISE-RSLAAVIAIHGDDRGLRLPPKIAPIQIVIVPIPTKDYEERIMEYSREVKSTLER- 321

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              V  D+  E+ G +F   ++ G P+++ +G   +   +V +  R    RE + ++++
Sbjct: 322 SFRVHLDESEERPGYKFYKWEMKGVPIRIEIGRNELERREVTVFRRDKMEREAIPIDKL 380


>gi|170756076|ref|YP_001783145.1| putative prolyl-tRNA synthetase [Clostridium botulinum B1 str.
           Okra]
 gi|169121288|gb|ACA45124.1| putative prolyl-tRNA synthetase [Clostridium botulinum B1 str.
           Okra]
          Length = 545

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 111/227 (48%), Gaps = 26/227 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT--DIF 118
             + G  ++S+P                Y   +  ++++N+  ++   ++EE ++  +  
Sbjct: 61  SKKIGGSQISIP----------------YVNNLEEVSEKNNGFIL--NSNEETLSFINFL 102

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +S + SY+ LP  FY+   +F  + +   G+M  R+ L ++ +   L  E  K +  ++ 
Sbjct: 103 KSSVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQIL-REYFYMVLDGENDKFNKKELI 161

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             Y  IF  + L+   +  E      D + +FI+  + G+  +   K
Sbjct: 162 KLYKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLHIVACK 203



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ATF    GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D
Sbjct: 400 CATFIDNKGKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKVIVTIANVKD 459

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEI
Sbjct: 460 EQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEI 518

Query: 419 KHRLTGIREDMSLEEV 434
           K R +  ++++ ++++
Sbjct: 519 KLRNSKEKKEIPIDQL 534


>gi|303244992|ref|ZP_07331315.1| prolyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302484644|gb|EFL47585.1| prolyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 471

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 162/412 (39%), Gaps = 73/412 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG   +LP G K       IIR   + TG  E   P L   DL  + G +   +  E+  
Sbjct: 29  KGCGVYLPYGFKIRKYAFEIIRNMLDETGHDEALFPMLIPEDLLAKEGEHIKGFEDEVYW 88

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  +  + +  IK + +LP   YQ+   FR E +    ++R
Sbjct: 89  VTHGGKTPLDVKLALRPTSETPIYYMMKLWIKVHTDLPIKVYQVVNTFRYETKHTRPLIR 148

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +  K+A++   T E +++   +    Y   F  LG+ +I                 
Sbjct: 149 LREIMTFKEAHTAHATKEDAENQVKEAINIYKNFFDELGIPTI----------------- 191

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                     +    ++  FP       FD I      ++  T        VHN      
Sbjct: 192 ----------ISKRPEWDKFPGAEYTMAFDTIFPDGKTMQIGT--------VHN------ 227

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           L +N               F   + L       G D    Y     YGI   RV+A++I 
Sbjct: 228 LGQN---------------FAKTFELEFETADGGKD----YAYQTCYGISD-RVIASIIA 267

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG+I P +VAP +I +I +  K  +++  +  E++Y  L + G  V  DD   + 
Sbjct: 268 LHGDEKGLILPPNVAPIQIVIIPLLFKGKEEIAMNKAEEVYNTLKEKGFRVKLDDRDIRP 327

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVIN 436
           G +F   +L G P+++ +G + + + K+ +  R TG    I ED  L+ + N
Sbjct: 328 GRKFNDWELKGAPIRIELGPRDIENKKITLFRRDTGEKFQINEDDLLDGINN 379


>gi|254429307|ref|ZP_05043014.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195476|gb|EDX90435.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 638

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 7/190 (3%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R  G+ H  Q + G   W P G +   N+   IR +  + G  E+S P 
Sbjct: 239 EAEKRDHRKLAREMGLFHIQQEAVGSMFWHPKGWRMRQNLENYIRGKMEKGGYQEVSTPQ 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG +D YG++M  +   + K M   P +      IF+  I SYR+LP    
Sbjct: 299 MMDRILWEQSGHWDKYGEDMFTVCTHDHKEMAVKPMNCPGHVQIFKQGITSYRDLPIRLG 358

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLK 191
           +    FR+E      G+MR+R F   DA+ F    E   +     F+  LR ++   G  
Sbjct: 359 EFTTLFRNEAHGALHGLMRARSFSQDDAHIF--CTEEQINEETAGFIKMLREVYEDFGFD 416

Query: 192 SIPMRAESGP 201
           S  ++    P
Sbjct: 417 SFRIKFSDRP 426


>gi|256424918|ref|YP_003125571.1| prolyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256039826|gb|ACU63370.1| prolyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 493

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 149/336 (44%), Gaps = 65/336 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 117 EEELIVRPTSETIIWNTYKDWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEG 175

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     +M   Y                                AD  E  
Sbjct: 176 HTAHATAEEAIAETRQMLEVY--------------------------------ADFAE-- 201

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                ++M  P+         +  + S  E+    +A   D +     ++L ++     +
Sbjct: 202 -----NYMALPV---------VRGVKSPAER----FAGALDTY---CIEALMQD----GK 236

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F   + K  YV   S+G+ + R++ A++ +  D  G++ 
Sbjct: 237 ALQAGTSHFLGQNFAKAFDVKFSNKENKQEYVWATSWGV-STRLIGALVMAHSDDDGLVL 295

Query: 341 PDSVAPFKISLINI-KAHDQVCR-DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ ++ I K  +Q  + DA  ++I + L K+G  V +DD    + G +FA  +
Sbjct: 296 PPRIAPLQVVIVPIYKGEEQKSKIDAKVDEIISGLKKLGIRVKYDDSDNARPGWKFAEYE 355

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G P+++ +G++ + ++  E+  R T  +E +SL+
Sbjct: 356 MKGVPVRIALGARDLENNVAEVARRDTKTKESLSLD 391


>gi|156030577|ref|XP_001584615.1| hypothetical protein SS1G_14384 [Sclerotinia sclerotiorum 1980]
 gi|154700775|gb|EDO00514.1| hypothetical protein SS1G_14384 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 362

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 22/140 (15%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK-----------------GADGKDHY-VQMGSYGIGA 321
           + IE+GH F+ GT+YS PM AT                   G +G+    ++MG +GIG 
Sbjct: 223 KAIELGHTFHLGTRYSKPMEATVTVPCNLVENKSEEITALLGENGQVQVSMEMGCHGIGV 282

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ AV E+  DGKG+ WP  ++PF+I +I  K  D+       +I+   S    D   
Sbjct: 283 TRMIGAVAETLVDGKGLNWPRVMSPFEIVVIPGKGSDE----GALQIFDIFSIAAMDPVI 338

Query: 382 DDMGEQIGSQFAVADLLGFP 401
           DD G  I  +   ADL+G+P
Sbjct: 339 DDRGVSIAWKLRDADLIGYP 358


>gi|163847354|ref|YP_001635398.1| proline--tRNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222525199|ref|YP_002569670.1| Proline--tRNA ligase [Chloroflexus sp. Y-400-fl]
 gi|163668643|gb|ABY35009.1| Proline--tRNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222449078|gb|ACM53344.1| Proline--tRNA ligase [Chloroflexus sp. Y-400-fl]
          Length = 525

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 260 SDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   +  D  P     R+  RG  +G I         P +   + A+G++  + +   
Sbjct: 348 ADISQAEAGDPCPWCGTARIEGRGALIGAI-----TAPQPTALLVQDAEGQNRPLIITGL 402

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            I    ++  V+E  HD +GI+WP ++APF I L+ +   + V   A   + A L   G 
Sbjct: 403 EIDLEPLLYLVVEQHHDERGIVWPAAIAPFAIHLVTLGRGEAVV-TAGHALAAMLQTAGW 461

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            V  DD  E+ G +F  ADL+G P +V++  K ++ +++EI+HR
Sbjct: 462 HVLIDDRDERAGVKFNDADLIGAPWRVVISEKLLAANQLEIRHR 505


>gi|126662081|ref|ZP_01733080.1| prolyl-tRNA synthetase [Flavobacteria bacterium BAL38]
 gi|126625460|gb|EAZ96149.1| prolyl-tRNA synthetase [Flavobacteria bacterium BAL38]
          Length = 492

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 150/352 (42%), Gaps = 65/352 (18%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK M+    + ++ +I  PT E ++   ++  ++SYR+LP    Q     R E+R R   
Sbjct: 105 GKLMVDPNAKLEEELIVRPTSEAIIWSTYKGWVQSYRDLPLLINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T + +     KM   Y                            
Sbjct: 164 LRTAEFLWQEGHTAHATRQEAIEESEKMMNVY---------------------------- 195

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               AD        +++FM  P+         I  L +  E+    +A   + +     +
Sbjct: 196 ----AD-------FAQNFMAIPV---------IKGLKTETER----FAGADETY---CIE 228

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           +L ++     + ++ G   + G  ++      F   +GK  YV   S+G+ + R++ A++
Sbjct: 229 ALMQD----GKALQAGTSHFLGQNFAKAFDVKFANKEGKQEYVWGTSWGV-STRLMGALV 283

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGE 386
            +  D KG++ P ++AP ++ ++ I   D+      +    + A L K+G  V +D+   
Sbjct: 284 MTHSDDKGLVLPPNLAPIQVVIVPIYKTDEQFDAISEQVNALAAELRKLGISVKYDNRDT 343

Query: 387 QI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           Q  G +FA  +L G P+++ +G   + +   EI  R    +E +S E V +Y
Sbjct: 344 QKPGFKFAEWELKGVPVRIALGPNDLENGTYEIARRDNLSKEVVSKEGVASY 395


>gi|311747849|ref|ZP_07721634.1| proline--tRNA ligase [Algoriphagus sp. PR1]
 gi|126575841|gb|EAZ80151.1| proline--tRNA ligase [Algoriphagus sp. PR1]
          Length = 493

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 136/333 (40%), Gaps = 81/333 (24%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E V+   +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETVIWSTYKNWIQSYRDLPLLVNQWANVVRWEMRTRL-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T + ++    +M   Y                                       
Sbjct: 174 HTAHATAKEAEAETLQMMNVYATF------------------------------------ 197

Query: 221 VFCSKDFMDFPI----PSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              ++DFM  P+     S N  F   DD + + ++++                       
Sbjct: 198 ---AEDFMALPVVRGRKSANERFAGADDTLCIEAMMQ----------------------- 231

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 + ++ G   + G  ++      F   DGK  YV   S+G+ + R++ A+I +  
Sbjct: 232 ----DGKALQAGTSHFLGQNFAKAFDVKFAAKDGKLDYVWGTSWGV-STRLMGALIMAHS 286

Query: 334 DGKGIIWPDSVAPFKISLINI----KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           D  G++ P  +AP ++ ++ I    +  D +   A E I A L KVG  V +D+    + 
Sbjct: 287 DDNGLVLPPKLAPIQVVIVPIYRKEEEFDAISEKANE-IMAELRKVGISVKYDNRDTHKP 345

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G +FA  +L G PL++ +G + + +  +EI  R
Sbjct: 346 GWKFAEYELKGVPLRIAIGPRDLENGTIEIARR 378


>gi|332299347|ref|YP_004441268.1| Prolyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176410|gb|AEE12100.1| Prolyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 494

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 148/338 (43%), Gaps = 65/338 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++   +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 119 EEELIVRPTSETIIWSTYKNWIQSYRDLPLLCNQWANVVRWEMRTRL-FLRTAEFLWQEG 177

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     KM   Y                       D + E + L       
Sbjct: 178 HTAHATQEEAIAEARKMIGVY----------------------EDFAREMLAL------- 208

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                     P+         I+ + S  E+    +A   D +     +++ ++     +
Sbjct: 209 ----------PV---------IVGVKSETER----FAGAIDTYT---IEAMMQD----GK 238

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++     TF   +G   YV   S+G+ + R+V A+I +  D  G++ 
Sbjct: 239 ALQSGTSHFLGQNFAKAFDVTFLDKEGNRDYVWATSWGV-STRLVGALIMAHSDDNGLVL 297

Query: 341 PDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ ++ I K+ +++ R  +  +KI + L + G  V  DD   ++ G +FA  +
Sbjct: 298 PPRIAPIQVVIVPIYKSEEELQRIHETADKIVSELRQHGVSVQIDDNDNKKPGWKFAEYE 357

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G P+++ +G + +    VE+  R T  +E M LE +
Sbjct: 358 MKGVPVRLALGMRDLEHGTVEVARRDTLTKETMPLEGI 395


>gi|228471025|ref|ZP_04055869.1| prolyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|313885947|ref|ZP_07819685.1| proline--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|228307245|gb|EEK16268.1| prolyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|312924477|gb|EFR35248.1| proline--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 494

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 147/336 (43%), Gaps = 65/336 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++   +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 119 EEELIVRPTSETIIWSTYKNWIQSYRDLPLLCNQWANVVRWEMRTRL-FLRTAEFLWQEG 177

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     KM   Y                       D + E + L       
Sbjct: 178 HTAHATQEEAIAEARKMIGVY----------------------EDFAREMLAL------- 208

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                     P+         I+ + S  E+    +A   D +     +++ ++     +
Sbjct: 209 ----------PV---------IVGVKSETER----FAGAIDTYT---IEAMMQD----GK 238

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++     TF   +G   YV   S+G+ + R+V A+I +  D  G++ 
Sbjct: 239 ALQSGTSHFLGQNFAKAFDVTFLDKEGNRDYVWATSWGV-STRLVGALIMAHSDDNGLVL 297

Query: 341 PDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ ++ I K+ +++ R  +  +KI + L + G  V  DD   ++ G +FA  +
Sbjct: 298 PPRIAPIQVVIVPIYKSEEELQRIHETADKIVSELRQHGVSVQIDDNDNKKPGWKFAEYE 357

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G P+++ +G + +    VE+  R T  +E M LE
Sbjct: 358 MKGVPVRLALGMRDLEHGTVEVARRDTLTKETMPLE 393


>gi|33322959|gb|AAQ07216.1|AF496524_1 prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis]
          Length = 96

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V MGSYGIG  R+++AV+E      G+ WP  +APF I +I +K  D++     E + A+
Sbjct: 3   VIMGSYGIGVTRLLSAVVEQHAXENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEAK 62

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            +K   DV +DD  E+ G +F  ADL+G P+++ VG
Sbjct: 63  FAK--YDVLYDDRNERPGVKFNDADLVGAPIRITVG 96


>gi|315187358|gb|EFU21114.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 477

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 66/335 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +++  I+SYR+LP    Q     R E R R   +R+ EFL ++ 
Sbjct: 101 EEPLVVRPTSETIIWSMYKKWIQSYRDLPLLINQWANVVRWEKRTRL-FLRTTEFLWQEG 159

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           +    T   ++    +  +  L ++ +                   + E++ L       
Sbjct: 160 H----TAHATREEAEEEALRMLHVYRKF------------------AEEYLALP------ 191

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           VF  +        +E+  F   ++  SI                    +++ ++K+    
Sbjct: 192 VFYGRK-------TESEKFAGAVTTYSI--------------------EAMMQDKK---- 220

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++     TF+   G   YV   S+G+ + R++ AVI +  D +G++ 
Sbjct: 221 ALQAGTSHFLGQNFAKAFDVTFQTQAGSLDYVWATSWGV-STRLIGAVIMAHSDNRGLVL 279

Query: 341 PDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           P  +AP +  +I I   K  DQV  D  ++++ARL++ G  V  D D     G +FA  +
Sbjct: 280 PPRIAPTQAVIIPIYTKKTVDQVA-DYAKRVFARLTEAGLSVEMDLDDQNSPGWKFAEWE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L G P++V VG + +   K  +  R TG +  +S+
Sbjct: 339 LRGVPIRVEVGPRDMEQEKAVLVRRDTGEKRAVSV 373


>gi|319651798|ref|ZP_08005923.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396450|gb|EFV77163.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 643

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 175/404 (43%), Gaps = 36/404 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G     N+   I +++ R G   +  P + S DL+  SG +D Y ++M  +
Sbjct: 264 QGLPMWLPKGATIRRNIERYIVDKEERLGYDHVYTPIMGSVDLYKTSGHWDHYQEDMFPV 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I+++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNEQLVLRPMNCPHHMMIYKNGIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    +     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKEEFKRVVHLILEVYKDFDINDYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     +   +  D I L+    E   A Y    DV   ++  +L ++
Sbjct: 429 PQDTEKYFDDDEMWEKAQAMLKEAMDEIGLDYFEAEGEAAFYGPKLDV---QVKTALGKD 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+   DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYVAEDGKPHRPVVIHRGVVSTMERFVAFLIEEY 537

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +     +  D  +++  +L   G  V  DD  E+IG + 
Sbjct: 538 ---KG-AFPTWLAPVQVQVIPVSP--DIHFDYAKQVREQLQAEGFRVELDDRNEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             A +   P  ++VG   V++  V ++       E +S E+ I+
Sbjct: 592 REAQMQKTPYMLVVGDNEVAEKAVNVRKYGEQKSETVSFEDFIS 635


>gi|110834994|ref|YP_693853.1| threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110648105|emb|CAL17581.1| Threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 638

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 3   RSKYFLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIRE 59
           R K  L    +   +AE   H KL    G+ H  Q + G   W P G +   N+   IR 
Sbjct: 225 RDKKELNAYLKQLEEAEKRDHRKLAKEMGLFHIQQEAVGSMFWHPKGWRMRKNLENYIRG 284

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +  + G  E+S P +    LW +SG +D YG++M  +   + K M   P +      IF+
Sbjct: 285 KMEKGGYEEVSTPQMMDRILWEQSGHWDKYGEDMFTVCTHDHKEMAVKPMNCPGHVQIFK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             I SYR+LP    +    FR+E      G+MR+R F   DA+ F    E   +     F
Sbjct: 345 QGITSYRDLPIRLGEFTTLFRNEAHGALHGLMRARSFSQDDAHIF--CTEEQVNEETAGF 402

Query: 179 VSYLR-IFHRLGLKSIPMRAESGP 201
           +  LR ++   G  S  ++    P
Sbjct: 403 IKMLREVYADFGFDSFRIKFSDRP 426


>gi|148381445|ref|YP_001255986.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           3502]
 gi|153934131|ref|YP_001385820.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|153935851|ref|YP_001389227.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|148290929|emb|CAL85065.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152930175|gb|ABS35675.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|152931765|gb|ABS37264.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
          Length = 545

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 105/225 (46%), Gaps = 22/225 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y   +  ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIP----------------YVNNLEEVSEKNNGFILNFNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L ++ +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQIL-REYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF  + L+   +  E      D + +FI+  + G+  +   K
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLHIVACK 203



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ATF    GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D
Sbjct: 400 CATFIDNKGKSKPFTIYKGFMDIYKIISWTIEQNKDELGIVWPMETSAFKVIVTIANVKD 459

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEI
Sbjct: 460 EQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEI 518

Query: 419 KHRLTGIREDMSLEEV 434
           K R +  ++++ ++++
Sbjct: 519 KLRNSKEKKEIPIDQL 534


>gi|68076271|ref|XP_680055.1| prolyl-t-RNA synthase [Plasmodium berghei strain ANKA]
 gi|56500925|emb|CAH98273.1| prolyl-t-RNA synthase, putative [Plasmodium berghei]
          Length = 523

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 25/238 (10%)

Query: 4   SKY-FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +KY F  I  +N +     + +L+ R   I + + G+Y+ LPLG + ++ +   I     
Sbjct: 58  TKYIFNKIFNDNIKQNGDKASELLFRANYIKEIN-GLYNMLPLGLRVINKIKDFINNYLE 116

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-------ADRN----------DKAMI 105
           +  +  + +  LQ   LW  S RY  Y  E L +       AD N          +   I
Sbjct: 117 KINSHSVFLSILQPKRLWNISDRYKLYSDEFLYVYKQKQQKADTNLGETIKKKFEEDGNI 176

Query: 106 YGPTHEE----VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
             PT EE    ++ +++  +  + ++ P   +Q   KFR+E R    + +S+EFLMKD Y
Sbjct: 177 LSPTCEETALTLINEVYNLNA-TEKHFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGY 235

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
           SF    +     Y      Y  IF++LGLK +I  + +   +    SHE+ +L   G+
Sbjct: 236 SFHTNEKCMNEIYEIYKECYNDIFNKLGLKYNIIKKRKKDKMNALESHEYQILCRDGK 293



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 66/172 (38%), Gaps = 37/172 (21%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E  HIF  G  YS  ++  F     +   + MGSYGIG  R++  +I++ +D  GI  P 
Sbjct: 296 EGAHIFKLGDYYSKKLNINFLNKKNEKKNIYMGSYGIGINRLLYFLIDNFYDENGIKLPS 355

Query: 343 SVAPFKISLINIKAHDQVCRDACEKI---------------------------------- 368
            VAPF I LI      +   +   KI                                  
Sbjct: 356 QVAPFSIYLIQTNQKSKYSSEKVNKIANTLRNEINEKTNDNKTLYNSLNSNDMEYILTIW 415

Query: 369 -YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            Y  L     D ++D+    +  +    DL+G   +VI+  K  SD K +IK
Sbjct: 416 LYTILKANNIDTYYDNTDLHLSRKLKNCDLIGASNRVIINLK--SDEKKKIK 465


>gi|110638045|ref|YP_678253.1| threonyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354610|sp|Q11UK3|SYT_CYTH3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110280726|gb|ABG58912.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 645

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 173/458 (37%), Gaps = 77/458 (16%)

Query: 5   KYFLPILQE-NPRDAEIASHKLML-----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           K +L IL+E   RD      +L L     + GM      G+  WLP G    + +   ++
Sbjct: 229 KDYLTILEEAKKRDHRKLGKELELFAFSEKVGM------GLPLWLPKGALLRERLENFLK 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTD 116
           + Q R G   +  P + +  L+V SG +D YGK+  +        +  +  P +     +
Sbjct: 283 KAQVRAGYQPVVTPHIGNKQLYVTSGHFDKYGKDSFQPIFTPHEGEQFLLKPMNCPHHCE 342

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+++  +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + 
Sbjct: 343 IYKTKPRSYKDLPIRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFL 401

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L +F  LG      +              I L D      +  +D         
Sbjct: 402 KVIDLVLYVFKVLGFNDYTAQ--------------ISLRDPENKDKYIGED--------- 438

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHI 287
                         EQW     A  +   EK   ++ E    +  G +        +G  
Sbjct: 439 --------------EQWQKAEQAIIEASAEKGLSTVTELGEAAFYGPKLDFMVKDALGRK 484

Query: 288 FYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIW- 340
           +  GT    Y LP      + G+D + H  V +     G++    AV+     G   +W 
Sbjct: 485 WQLGTIQVDYQLPNRFELEYTGSDNQKHRPVMLHRAPFGSLERFIAVLIEHVAGNFPLWL 544

Query: 341 -PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            PD +A   IS        +   D  + +Y RL       F D+  E+IG +    ++  
Sbjct: 545 SPDQIAILPIS--------EKFNDYAQDVYDRLLVKDIRGFIDNRDEKIGKKIRDTEVKK 596

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            P  +++G K V++ K+ I+         M +E+ I Y
Sbjct: 597 VPFMLVIGEKEVNEGKIAIRKHGGEDLGSMLVEDFIQY 634


>gi|28211884|ref|NP_782828.1| threonyl-tRNA synthetase [Clostridium tetani E88]
 gi|73919782|sp|Q891T0|SYT_CLOTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28204327|gb|AAO36765.1| threonyl-tRNA synthetase [Clostridium tetani E88]
          Length = 639

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 185/448 (41%), Gaps = 56/448 (12%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T  I++   G   + P G    + +    RE+  + G
Sbjct: 231 YLKMLEEAKRRDHRKLGKELDLFT--INEEGPGFPFFHPKGMVVRNILENFWREKHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y KE +     +++     P +      +++SH+ SY
Sbjct: 289 YDEIRTPVILNEELWHRSGHWDHY-KENMYFTKIDNENFAIKPMNCPGSILVYKSHLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH---SYNKMFVSY 181
           +  P    ++ L  R EL     G+MR R F   DA+ F +T E  K    +  K+  S+
Sbjct: 348 KEFPMRLGELGLVHRHELSGALHGLMRVRCFTQDDAHIF-MTKEQIKDEILNVIKLIDSF 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++F       +  R E   +G D   E   +A  G          +++ I   +  F  
Sbjct: 407 YKVFGFEYFVELSTRPEDS-MGSDEDWE---VATNGLKNALEGAG-LEYKINEGDGAF-- 459

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
                         Y    D H   L D +        R  + G I   F    ++ L  
Sbjct: 460 --------------YGPKIDFH---LKDCI-------GRTWQCGTIQLDFQMPERFDL-- 493

Query: 299 SATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             T+ G DG+ H  V +     G++ R +  +IE         +P  +AP ++ ++ I  
Sbjct: 494 --TYVGQDGEKHRPVMVHRVVFGSIERFIGILIEHFAGA----FPTWLAPVQVKVMTITD 547

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D   K+   L + G  V +DD  E+IG +   A L   P  +I+G K VS++KV
Sbjct: 548 SQ---KDYANKVVNDLKEKGIRVEFDDRNEKIGYKIREAQLQKVPYMIILGDKEVSENKV 604

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R  G    +SL+E +   ++   N
Sbjct: 605 AVRSRKEGDLGAISLKEFVAKLNYEIDN 632


>gi|171780136|ref|ZP_02921040.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281484|gb|EDT46919.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 697

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 163/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G + +  P L S DL+  SG +D Y
Sbjct: 303 MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVESGYLHVYTPPLASVDLYKTSGHWDHY 362

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 363 REDMFPTMDMGDGEEFVLRPMNCPHHIQVYKYHVHSYRELPIRIAEIGMMHRYEKSGALS 422

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R           
Sbjct: 423 GLQRVREMSLNDGHLF-VTPEQIQEEFQKALQLIIDVYEDFNLTEYRFR----------- 470

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 471 ---LSLRDPKDTHKYYDDDEM-----WENAQSMLKAALDEMGVEYFEAEGEAAFYGPKLD 522

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I 
Sbjct: 523 I---QVKTALGNEETLSTIQLD----FLLPERFGL----TYIGADGEEHRPVMIHRGVIS 571

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I +     V  D   +I   L   G  V 
Sbjct: 572 TMERFTAILIENYKGAFPTW---LAPHQVTVIPVSNEAHV--DYAWEIAKVLRDKGVRVD 626

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 627 VDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 665


>gi|254495081|ref|ZP_05108005.1| prolyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85819431|gb|EAQ40588.1| prolyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 492

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/355 (19%), Positives = 154/355 (43%), Gaps = 65/355 (18%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D+ GK  +    + ++ ++  PT E ++ + ++  I+SYR+LP    Q     R E+R R
Sbjct: 102 DNEGKLRVDPEAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R+ EFL ++ ++   T   +     +M                           D+
Sbjct: 162 L-FLRTAEFLWQEGHTAHATKAEAVAEAKQM--------------------------QDV 194

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF             +++FM  P+         I  + S  E+    +A   D +   
Sbjct: 195 YAEF-------------AENFMAMPV---------IKGVKSDSER----FAGAEDTYT-- 226

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             ++L ++     + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ 
Sbjct: 227 -IEALMQD----GKALQAGTSHFLGQNFAKAFDVKYTSKEGKQEYVWATSWGV-STRLIG 280

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDD 383
            +I +  D  G++ P  +AP ++ ++ I  +D+      +K+ A    L K G  V +D+
Sbjct: 281 GLIMTHSDDNGLVLPPKLAPIQVVIVPIYKNDEQLEAISDKVNAISIELGKKGISVKYDN 340

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               + G++FA  +L G P+++ +G++ + +  +E+  R T  +  + + + ++Y
Sbjct: 341 RDTFRPGAKFAEYELKGVPVRIALGARDLENGTLEVARRDTLEKNTIDINDAVSY 395


>gi|306831875|ref|ZP_07465030.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425801|gb|EFM28918.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 648

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 163/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G + +  P L S DL+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVASGYLHVYTPPLASVDLYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQKALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPKDTHKYYDDDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFGL----TYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I +     V  D   ++   L   G  V 
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTVIPVSNEAHV--DYAWEVAKVLRDKGVRVD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 578 VDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 616


>gi|28948883|pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Cysteine
           Sulfamoyl Adenylate
 gi|28948884|pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus
 gi|28948885|pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Proline
           Sulfamoyl Adenylate
 gi|28948886|pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Alanine
           Sulfamoyl Adenylate
          Length = 501

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 158/413 (38%), Gaps = 74/413 (17%)

Query: 23  HKLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-L 79
           H ++    +I Q    KG++ W+P G     N   I+R   +R    E+  P L   D L
Sbjct: 45  HNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDRDHE-EVLFPLLVPEDEL 103

Query: 80  WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     +  E+  +      +  + +   PT E VM  +F   ++S+ +LP  FYQ+
Sbjct: 104 AKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQV 163

Query: 136 QLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E +    ++R RE    K+A++   T   ++    +    Y   F+ LG+  + 
Sbjct: 164 VNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLI 223

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R                              +  FP       FD ++     ++  T 
Sbjct: 224 TR---------------------------RPPWDKFPGSEYTVAFDTLMPDGKTLQIGT- 255

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                  VHN                          G  ++      F+  +G   YV  
Sbjct: 256 -------VHN-------------------------LGQTFARTFEIKFETPEGDHEYVHQ 283

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYAR 371
             YG+   RV+A+VI    D  G+  P  VA  ++ ++ I   KA ++V  +AC ++ +R
Sbjct: 284 TCYGLSD-RVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVM-EACRELRSR 341

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           L   G  V  DD   + G ++   ++ G PL+V +G + +      I  R TG
Sbjct: 342 LEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTG 394


>gi|288905772|ref|YP_003430994.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325978807|ref|YP_004288523.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732498|emb|CBI14070.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325178735|emb|CBZ48779.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 648

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 163/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G + +  P L S DL+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVASGYLHVYTPPLASVDLYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQKALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPKDTHKYYDDDEM-----WENAQSMLKAALDEMGVEYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFGL----TYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I +     V  D   ++   L   G  V 
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTVIPVSNEAHV--DYAWEVAKVLRDKGVRVD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 578 VDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 616


>gi|332664427|ref|YP_004447215.1| threonyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333241|gb|AEE50342.1| threonyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 645

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 181/455 (39%), Gaps = 77/455 (16%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIR 58
           P+  ++  H +ML       H K                G+  WLP G    D +   +R
Sbjct: 224 PKQKDLQEHLVMLEEARKRDHRKLGQELELFMFSERVGAGLPIWLPKGNALRDRLMNFLR 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTD 116
            EQ + G   ++ P +   +L+V SG Y  YGK+  +     ++ +  +  P +     +
Sbjct: 284 VEQEKRGYKLVTTPHIGRKELYVTSGHYAKYGKDSFQPIHTPKDGEEFLLKPMNCPHHCE 343

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+     SYR+LP    +    +R E      G+ R R F   DA+ F  T E  K  + 
Sbjct: 344 IYAHRPHSYRDLPMRIAEFGTVYRYEQTGELHGLSRVRGFTQDDAHIF-CTEEQVKGEFL 402

Query: 176 KMFVSYLRIFHRLGLK----SIPMRAESGP---IGGD---LSHEFIVLADTGETQVFCSK 225
            +      + +++G K     I +R  + P   +G D    + E  ++  T E  +  + 
Sbjct: 403 NVLDLTRTVLYKMGFKEFTAQISLRDPNTPEKYLGSDENWRNAENAIIEATREVGLKTTM 462

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +  +        DF   +  ++I  QW                              ++G
Sbjct: 463 ELGEAAFYGPKLDF---MVRDAIGRQW------------------------------QLG 489

Query: 286 HIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWP 341
            I      Y+LP      + GAD K H  V +     G+M R ++ +IE++  GK  +W 
Sbjct: 490 TI---QVDYNLPERFELEYVGADNKTHRPVMIHRAPFGSMERFISILIENTA-GKFPLW- 544

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             + P + +L+ I    +   D C++I  +L+      + DD  E IG +    +L   P
Sbjct: 545 --LMPEQYALLPI---SEKFVDYCKEIEEKLATHDIRGYVDDRNETIGRKIRDTELKRIP 599

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +IVG K +  + V ++ +  G +  MSLE  ++
Sbjct: 600 YMLIVGEKEMEATGVAVRRQGEGDKGSMSLEAFVS 634


>gi|284161870|ref|YP_003400493.1| prolyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011867|gb|ADB57820.1| prolyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 476

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 158/394 (40%), Gaps = 74/394 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG+Y WLP G K    V A +RE  +R    E+  PTL   D+ + ES     +  E+  
Sbjct: 35  KGLYVWLPFGFKIRQLVYAKLRELLDRDHQ-EVYFPTLIPEDMLMKESKHIKGFEDEVYW 93

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +  D  +   PT E  M  +F+  I+S+ +LP   YQI   FR E +    ++R
Sbjct: 94  VTHGGLEPLDVKLALRPTSETAMYPMFKLWIRSHADLPLKVYQIVNVFRYETKHTRPLIR 153

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++   T E ++    +    Y   +  L +  +                 
Sbjct: 154 LREVTSFKEAHTVHRTYEEAEEQVRQAVKLYKEFYDFLAIPYL----------------- 196

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                     VF   ++  FP        D  I+L++I                      
Sbjct: 197 ----------VFRRPEWDKFP------GADYTIALDTI---------------------- 218

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+      R +++G +      ++      ++  +G   Y     YGI   R +A++I 
Sbjct: 219 MPD-----GRTLQIGTVHNLADNFARTFEIKYETPEGDHAYAHQTCYGISE-RCIASLIS 272

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQ 387
              D  G++ P  VAP +I +I I  K  ++   +   K+Y RL    C  V  DD  E+
Sbjct: 273 IHGDDLGLVLPFEVAPVQIVIIPILYKGKEEKVMELSRKLYERLK---CFRVVLDDSDER 329

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G+++   +L G P++  +G +   + +V +  R
Sbjct: 330 PGAKYYKWELKGVPIRFEIGPREAENGEVVVSFR 363


>gi|187776553|ref|ZP_02993026.1| hypothetical protein CLOSPO_00065 [Clostridium sporogenes ATCC
           15579]
 gi|187775212|gb|EDU39014.1| hypothetical protein CLOSPO_00065 [Clostridium sporogenes ATCC
           15579]
          Length = 545

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 107/225 (47%), Gaps = 22/225 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +  L+E P D ++ S KL+L+ G+I +   G+Y++ PLG   L+N+  II + 
Sbjct: 1   MRLSKTLVHSLREYPADLDMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLENIQKIIEDN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y K+   ++ +N++ ++          +  ++
Sbjct: 61  SKKNGGFQISIP----------------YIKDFQDVSKKNNEFILDSNEENLRFINFLKN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+   +   + +   G+M  ++ L K+ +   L  E +K +  ++   
Sbjct: 105 NVTSYKQLPLFFYENNTEINYKGKNNLGIMCGKQVL-KEHFYMMLDEENNKFNKEELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF  + L+   +  E      D + +FI+  + G++ +   K
Sbjct: 164 YKDIFKIMNLQYHIVEDEL-----DGTIKFIIYDNIGDSHIVECK 203



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 1/151 (0%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           L  NK     G  +G I            ATF    GK     +    +   ++++  IE
Sbjct: 372 LCGNKLEINEGFVIGEIKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWAIE 431

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            + D  GI+WP   + FKI +      D+      E+IY+ L   G     DD  E+ G 
Sbjct: 432 QNKDELGIVWPMEASAFKIIVTIANEKDEQQFKVAEEIYSNLVNSGISTILDDRKERAGV 491

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +F  ADL G P+++ VG K + ++ VEIK R
Sbjct: 492 KFKDADLWGIPIRITVG-KNIKENNVEIKLR 521


>gi|306833981|ref|ZP_07467104.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304423847|gb|EFM26990.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 666

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 163/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G + +  P L S DL+  SG +D Y
Sbjct: 272 MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVASGYLHVYTPPLASVDLYKTSGHWDHY 331

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 332 REDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALS 391

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R           
Sbjct: 392 GLQRVREMSLNDGHLF-VTPEQIQEEFQKALQLIIDVYEDFDLTEYRFR----------- 439

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 440 ---LSLRDPKDTHKYYDDDEM-----WENAQSMLKAALDEMGVEYFEAEGEAAFYGPKLD 491

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I 
Sbjct: 492 I---QVKTALGNEETLSTIQLD----FLLPERFGL----TYIGADGEEHRPVMIHRGVIS 540

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I +     V  D   ++   L   G  V 
Sbjct: 541 TMERFTAILIENYKGAFPTW---LAPHQVTVIPVSNEAHV--DYAWEVAKVLRDKGVRVD 595

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 596 VDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 634


>gi|327402300|ref|YP_004343138.1| Ser-tRNA(Thr) hydrolase [Fluviicola taffensis DSM 16823]
 gi|327317808|gb|AEA42300.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Fluviicola
           taffensis DSM 16823]
          Length = 647

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 177/444 (39%), Gaps = 58/444 (13%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           ++Y   + +   RD      +L L T    +  +G+  WLP G    + +   +++ Q +
Sbjct: 229 TEYLERVEEAKRRDHRKVGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQRK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  ++  P + + +L+V SG Y+ YG +  +       D+  +  P +     +I++S 
Sbjct: 288 AGYEQVITPHIGNKELYVTSGHYEKYGADSFQAIKTPDPDEEFLLKPMNCPHHCEIYKSK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY++LP  F +    +R E      G+ R R F   DA+ F  T +  K  + K+   
Sbjct: 348 PRSYKDLPARFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTQDQVKEEFKKVIDL 406

Query: 181 YLRIFHRLGLKS----IPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            L IF  L  ++    I +R    P   IG D + E               K        
Sbjct: 407 VLYIFKTLDFQNFKAQISLRDPENPSKYIGSDENWE---------------KAESAIIEA 451

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +   +   ++ L        A Y    D   +   D+L        R  ++G I      
Sbjct: 452 AAEKNLPTVVELGE-----AAFYGPKLDFMVQ---DAL-------GREWQLGTI---QVD 493

Query: 294 YSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVAPFK 348
           Y+LP      + GAD + H  V +     G+M    AV+     G   +W   D VA   
Sbjct: 494 YNLPERFELEYTGADNQKHRPVMIHRAPFGSMERFVAVLLEHCGGDFPLWLATDQVAILP 553

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           IS      +++  +D  E     L+      F DD  E+IG +   A+L   P  ++VG 
Sbjct: 554 IS----DKYNEYAKDVLE----LLNNSDIRGFVDDRNEKIGKKIREAELKKIPFMLVVGE 605

Query: 409 KFVSDSKVEIKHRLTGIREDMSLE 432
           K   + +V ++ R  G +  MS++
Sbjct: 606 KEAEEKQVSVRQRGEGDKGSMSID 629


>gi|320547252|ref|ZP_08041545.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320448140|gb|EFW88890.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 697

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 163/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G + +  P L S DL+  SG +D Y
Sbjct: 303 MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVASGYLHVYTPPLASVDLYKTSGHWDHY 362

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 363 REDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALS 422

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R           
Sbjct: 423 GLQRVREMSLNDGHLF-VTPEQIQDEFQKALQLIIDVYEDFNLTDYRFR----------- 470

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 471 ---LSLRDPKDTHKYYDDDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 522

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I 
Sbjct: 523 I---QVKTALGNEETLSTIQLD----FLLPERFGL----TYVGADGEEHRPVMIHRGVIS 571

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I +     V  D   ++   L   G  V 
Sbjct: 572 TMERFTAILIENYKGAFPTW---LAPHQVTVIPVSNEAHV--DYAWEVAKLLRDKGVRVD 626

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 627 VDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 665


>gi|237796966|ref|YP_002864518.1| putative prolyl-tRNA synthetase [Clostridium botulinum Ba4 str.
           657]
 gi|229262943|gb|ACQ53976.1| putative prolyl-tRNA synthetase [Clostridium botulinum Ba4 str.
           657]
          Length = 545

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 112/227 (49%), Gaps = 26/227 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D EI S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEIDSQKLLLKGGLITKVDIGLYAFTPLGYSFLEGIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM--TDIF 118
             + G  ++S+P + + +                 ++++N++ ++    +EE++   +  
Sbjct: 61  SKKIGGSKISIPYVNNFE----------------DVSEKNNEFIL--NFNEEILRFINFL 102

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+++ SY+ LP  FY+   +F  + +   G+M  ++ L ++ +   L  E  K    ++ 
Sbjct: 103 RNNVTSYKQLPLFFYENNTRFSYKGKNNLGIMGGKQVL-REYFYMALDEENDKFYKKELI 161

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             Y  IF  + L+   +  E      D + +FI+  + G++++   K
Sbjct: 162 KLYKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNMGDSRIVACK 203



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ATF    GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D
Sbjct: 400 CATFIDNKGKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKVIVTITNVKD 459

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEI
Sbjct: 460 EQQFRVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEI 518

Query: 419 KHRLTGIREDMSLEEV 434
           K R +  ++++ ++++
Sbjct: 519 KLRNSKEKKEIPIDQL 534


>gi|168181840|ref|ZP_02616504.1| putative prolyl-tRNA synthetase [Clostridium botulinum Bf]
 gi|182674840|gb|EDT86801.1| putative prolyl-tRNA synthetase [Clostridium botulinum Bf]
          Length = 545

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 112/227 (49%), Gaps = 26/227 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D EI S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEIDSQKLLLKGGLITKVDIGLYAFTPLGYSFLEGIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM--TDIF 118
             + G  ++S+P + + +                 ++++N++ ++    +EE++   +  
Sbjct: 61  SKKIGGSKISIPYVNNFE----------------DVSEKNNEFIL--NFNEEILRFINFL 102

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+++ SY+ LP  FY+   +F  + +   G+M  ++ L ++ +   L  E  K    ++ 
Sbjct: 103 RNNVTSYKQLPLFFYENNTRFSYKGKNNLGIMGGKQVL-REYFYMALDEENDKFYKKELI 161

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             Y  IF  + L+   +  E      D + +FI+  + G++++   K
Sbjct: 162 KLYKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNMGDSRIVACK 203



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ATF    GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D+
Sbjct: 401 ATFIDNKGKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKVIVTITNVKDE 460

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK
Sbjct: 461 QQFRVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIK 519

Query: 420 HRLTGIREDMSLEEV 434
            R +  ++++ ++++
Sbjct: 520 LRNSKEKKEIPIDQL 534


>gi|153938792|ref|YP_001392858.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           Langeland]
 gi|152934688|gb|ABS40186.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           Langeland]
 gi|295320836|gb|ADG01214.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           230613]
          Length = 545

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 113/227 (49%), Gaps = 26/227 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG   L+ +  ++  +
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLECIQKVVENK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM--TDIF 118
             + G  ++S+P + + +                 ++++N+  ++    +EE++   +  
Sbjct: 61  SKKIGGSQISIPYVNNFE----------------DVSEKNNDFIL--NFNEEILMFINFL 102

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+++ SY+ LP  FY+   +F  + +   G+M  ++ L ++ +   L  E  K +  ++ 
Sbjct: 103 RNNVTSYKQLPLFFYENNTEFSYKGKNNLGIMSGKQVL-REHFYIALDEEKDKFNKKELI 161

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             Y  IF  + L+   +  E      D + +FI+  + G++++   K
Sbjct: 162 KLYKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSRIVACK 203



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ATF    GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D
Sbjct: 400 CATFIDNKGKSKLFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKVIVTIANVKD 459

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEI
Sbjct: 460 EQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEI 518

Query: 419 KHRLTGIREDMSLEEV 434
           K R +  ++++ ++++
Sbjct: 519 KLRNSKEKKEIPIDQL 534


>gi|307717742|ref|YP_003873274.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306531467|gb|ADN01001.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 477

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 66/335 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +++  I+SYR+LP    Q     R E R R   +R+ EFL ++ 
Sbjct: 101 EEPLVVRPTSETIIWSMYKKWIQSYRDLPLLINQWANVVRWEKRTRL-FLRTTEFLWQEG 159

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++       +  +  +     LR+ H               +  + + E++ L       
Sbjct: 160 HT-------AHATREEAEEEALRMLH---------------VYREFAEEYLALP------ 191

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           VF  +        +E+  F   ++  SI                    +++ ++K+    
Sbjct: 192 VFYGRK-------TESEKFAGAVTTYSI--------------------EAMMQDKK---- 220

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++     TF+   G   YV   S+G+ + R++ AVI +  D +G++ 
Sbjct: 221 ALQAGTSHFLGQNFAKAFDVTFQTQAGTLDYVWATSWGV-STRLIGAVIMAHSDDRGLVL 279

Query: 341 PDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           P  +AP +  +I I   K  DQV  D  ++++ RL++ G  V  D D     G +FA  +
Sbjct: 280 PPRIAPTQAVIIPIYTKKTVDQVA-DYAKRVFGRLAEAGLSVEMDLDDQNSPGWKFAEWE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L G P++V VG + +   K  +  R TG +  +S+
Sbjct: 339 LRGVPIRVEVGPRDMEQEKAVLVRRDTGEKRAVSV 373


>gi|310827810|ref|YP_003960167.1| threonyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308739544|gb|ADO37204.1| threonyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 637

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 167/408 (40%), Gaps = 47/408 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    + +    R E  + G  E+  P + +ADLW  SG +D+Y K
Sbjct: 254 MHEEGPGFPFFHPKGMVLRNELENFWRSEHMKKGYKEIKTPIMLNADLWRRSGHWDNY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      ++++   SYR LP    ++    R EL     G+M
Sbjct: 313 ENMYFTEIDGQEFAVKPMNCPGGMLVYKTRQHSYRELPLRMGELGQVHRHELHGALHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F LT +  K     +      I+   G K    +  + E   IG D  
Sbjct: 373 RVRTFTQDDAHIF-LTMDQVKDEVIGIIDLANEIYDIFGFKYKVELSTKPEKA-IGKDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   +A     +   +K  MD+ +   +  F                Y    D H E  
Sbjct: 431 WE---VATDALREALEAKG-MDYQLNPGDGAF----------------YGPKIDFHLE-- 468

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            DS+        R  + G I     +       T+ G+DG+ H  V +     G++    
Sbjct: 469 -DSI-------GRTWQCGTI-QLDMQMPERFDLTYVGSDGEKHRPVILHRTIFGSIERFL 519

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            ++     GK  +W   +AP ++ LI +  AHD   ++    I A+L + G  V  D   
Sbjct: 520 GILIEHFAGKFPLW---LAPVQVQLIPVSDAHDAFTKE----IAAKLEEAGIRVEIDFRD 572

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           E+IG +   A +   P  +++G K V   ++ I++R TG +E + ++E
Sbjct: 573 EKIGYRIREAQMQKIPYMLVIGDKEVESGRLSIRNRDTGEQETLKIDE 620


>gi|223932680|ref|ZP_03624679.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223898650|gb|EEF65012.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 650

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 173/412 (41%), Gaps = 36/412 (8%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 314 HEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPVRIAELGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDL 206
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R +   P   + 
Sbjct: 374 GLQRVREMTLNDGHIF-VTPEQIQEEFKKALQLIIDVYADFNLNDYRFRLSYRDPEDKEK 432

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            ++   + +  +  +  + D M         D+ +        E   A Y    D+   +
Sbjct: 433 YYDNDEMWENAQRMLKGAMDEM-------GVDYFE-------AEGEAAFYGPKLDI---Q 475

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           +  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I  M   
Sbjct: 476 VKTALGNEETLSTIQLD----FLLPERFGL----TYIGADGEEHRPVMIHRGVISTMERF 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++  ++ G    W   +AP ++++I I     +  D   K+   L   G  V  D+  
Sbjct: 528 TAILIETYKGAFPTW---LAPTQVTMIPISVEAHL--DYAWKVAKELQDRGVRVHVDERN 582

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           E++  +   +     P Q+IVG K + D+ V ++   +   +  S+ E +++
Sbjct: 583 EKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVRRYGSKATQTQSVSEFVDH 634


>gi|148984063|ref|ZP_01817358.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923352|gb|EDK74465.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800452|emb|CBW33086.1| threonyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 647

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVVKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|328951014|ref|YP_004368349.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451338|gb|AEB12239.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 647

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 168/416 (40%), Gaps = 60/416 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G    + +   +REEQ R G   ++ P + S +L+  SG Y  Y      
Sbjct: 267 GKGLPLWLPKGNTVRELLVQFMREEQLRRGYQLVTTPHVGSLELYKTSGHYPYYADSQFP 326

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             +  D+A +  P +      I+ +  +SYR LP    +    +R E      G+ R R 
Sbjct: 327 PIELEDEAYLLKPMNCPHHIRIYAARPRSYRELPLRLAEFGTVYRFEQSGELHGLTRVRG 386

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI--- 211
           F   DA+ F  TPE  K  +  +    + +F  LG+++   RA  G +    S +++   
Sbjct: 387 FTQDDAHIF-CTPEQVKEEFLSVLDLTMHVFRTLGMEN--YRARIG-VRDPSSDKYVGED 442

Query: 212 ---VLADTGETQVFCSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAPYAATSDVHN 264
               LA+  + Q  C +  + + + + +  F     D +  +++  +W            
Sbjct: 443 AKWALAER-QIQEACEEVGLAYTVEAGDAAFYGPKLDFVVRDALGREW------------ 489

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGA 321
                             ++G I      Y+LP     T+ G DG+ H  V +     G+
Sbjct: 490 ------------------QLGTI---QVDYNLPERFDLTYVGPDGEPHRPVMIHRAPFGS 528

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVF 380
           +     ++     G+  +W   +AP ++ ++ I   H    R+  +     L + G  V 
Sbjct: 529 LERFIGILIEHFAGEFPLW---LAPVQVVVVPITDRHLAYAREVAQA----LREAGIRVE 581

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   E++ ++   A+    P+ ++VG + V+   V ++ R T  R    LE V+ 
Sbjct: 582 VDTRSERMNAKIRDAETQKVPVILVVGDQEVAQRTVAVRDRRTKERATRPLEAVVQ 637


>gi|295115128|emb|CBL35975.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SM4/1]
          Length = 605

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 162/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+H    G   +LP G +  + +    RE   + G +E+S P + +  LW  SG +D Y 
Sbjct: 216 MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKKAGYVEISTPIILNRSLWETSGHWDHYK 275

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +      ++ S  +SYR+LP    ++ L  R E   +  G
Sbjct: 276 NNMYTTVIDEEDYAI--KPMNCPGGVLVYASEPRSYRDLPLRMGELGLVHRHEKSGQLHG 333

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           +MR R F   DA+ F +TPE  K     +      ++   G K    +  R E   +G D
Sbjct: 334 LMRVRCFTQDDAHIF-MTPEQIKDEIKGVATLINEVYTLFGFKYHVELSTRPEDS-MGSD 391

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E   LA  G   +  + D +  P      D               A Y    D H E
Sbjct: 392 EDWE---LATEG---LRSALDELGLPYVVNEGD--------------GAFYGPKIDFHLE 431

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
                             +G  +  GT    + LP      + GADG+ H  + +     
Sbjct: 432 DC----------------IGRTWQCGTIQLDFQLPQRFELEYTGADGEKHRPIMIHRVVF 475

Query: 320 GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           G++ R +  +IE         +P  +AP ++ ++ I   D+   D   K+Y  LS+ G  
Sbjct: 476 GSIERFIGILIEHFAGA----FPTWLAPVQVKVLPIS--DKYA-DYAAKVYESLSEAGIR 528

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              D   E+IG +   A     P  ++VG K   +  V ++ R  G     SLE  I 
Sbjct: 529 AEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSVRSRFAGDEGASSLESFIE 586


>gi|322807448|emb|CBZ05022.1| threonyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 635

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 163/420 (38%), Gaps = 49/420 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH+   G   + P G    + +    REE  + G  E+  P + + +LW +SG +D Y K
Sbjct: 255 IHEEGPGFPFFHPKGMIIRNILENFWREEHTKAGYQEIRTPLILNEELWHQSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D      P +      ++++ + SYR+LP    ++ +  R EL     G+M
Sbjct: 314 ENMYFTNIDDSDYAIKPMNCPGGILVYKNSMHSYRDLPLRLSELGIVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ + +T E  K     + +  +  F++L                    E+
Sbjct: 374 RVRCFTQDDAHLY-MTKEQIKEEIVGI-IKLIDKFYKL-----------------FGFEY 414

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V   T       S +  +          D I     + E   A Y    D H   L D 
Sbjct: 415 FVELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGPKIDFH---LKDC 471

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRV 324
           +        R  + G I   F    ++ L    ++ GADG+ H    V    YG    R 
Sbjct: 472 I-------GRTWQCGTIQLDFQMPERFDL----SYIGADGEKHRPVMVHRTIYG-SVERF 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +IE         +P  +AP ++ L+NI        D  +K+   L +    V  D  
Sbjct: 520 IGILIEQYAGA----FPTWLAPVQVKLMNITDSQY---DYLKKVEEALKENNIRVEIDTR 572

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +   A L   P  +I+G K V   KV ++ R  G    +SLEE I    +   N
Sbjct: 573 NEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKN 632


>gi|313159213|gb|EFR58586.1| threonine--tRNA ligase [Alistipes sp. HGB5]
          Length = 650

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 161/413 (38%), Gaps = 61/413 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G    D +   +R  Q   G  ++  P + + +L+V SG Y  YGK+  + 
Sbjct: 260 QGLPLWLPKGAALRDRLEQFLRNVQKEYGYQQVITPHIGNKELYVTSGHYAKYGKDSFQP 319

Query: 97  ADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I+RS  +SY+ LP    +    +R E      G+ R R
Sbjct: 320 IHTPIEGEEYLLKPMNCPHHCEIYRSKPRSYKELPVRLAEFGTVYRYEQSGELHGLTRVR 379

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+     + ++    L IF  L   +   +              I L
Sbjct: 380 GFTQDDAHLF-VRPDQLLEEFERVIDIVLYIFKTLKFDNYTAQ--------------ISL 424

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W    +A      EK  +++ E
Sbjct: 425 RDPNNKEKYIGSD-----------------------ENWEKAESAIMQAAEEKGLNTVVE 461

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP     T+KGAD K H  + +     
Sbjct: 462 YGEAAFYGPKLDFMVKDAIGRKWQLGTIQVDYNLPERFDLTYKGADDKLHRPIMIHRAPF 521

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+M    AV+     GK  +W   ++P ++ ++ I    +   D  +++   L++     
Sbjct: 522 GSMERFVAVLLEHTGGKFPLW---LSPQQVVVLPI---SEKFNDYAQQVAEYLNRSDVRT 575

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             DD  E+IG +    +L   P  +IVG K  ++  V ++ +  G +  M+LE
Sbjct: 576 EVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLVSVRAQGEGDKGQMTLE 628


>gi|225857248|ref|YP_002738759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254783542|sp|C1CLX1|SYT_STRZP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225725171|gb|ACO21023.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 647

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 156/387 (40%), Gaps = 35/387 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y ++M   
Sbjct: 261 QGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPT 320

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      G+ R RE
Sbjct: 321 MDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVRE 380

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D + F +TPE  +  + +     + ++    L     R              + L 
Sbjct: 381 MSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR--------------LSLR 425

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPE 273
           D  +T  +   D M     +      D + +N    E   A Y    D+   ++  +L +
Sbjct: 426 DPQDTHKYFDNDEMWENAQTMLRAALDEMGVNYFEAEGEAAFYGPKLDI---QIKTALGK 482

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESS 332
            + +S   ++    F    ++ L     + GADG+DH   M   G I  M    A++  +
Sbjct: 483 EETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVISTMERFTAILIEN 534

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + G    W   +AP +++LI +     V  D   ++  +L   G     D+  E++  + 
Sbjct: 535 YKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRADVDERNEKMQFKI 589

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +     P Q+IVG K + D  V ++
Sbjct: 590 RASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|313668802|ref|YP_004049086.1| threonyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313006264|emb|CBN87726.1| putative threonyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 637

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 154/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      V   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQAVEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 430

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           E    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 431 EVWDKAEQGLREALTACGVEWEE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 488

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 489 PERLNAEYVTENNDRARPVML-------------------------HRAILGSL----ER 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ ARL   G  V  D 
Sbjct: 520 FIGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAARLQAAGFRVELDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 573 RNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|88802133|ref|ZP_01117661.1| prolyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88782791|gb|EAR13968.1| prolyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 492

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/362 (19%), Positives = 149/362 (41%), Gaps = 79/362 (21%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D+ GK  +    + ++ ++  PT E ++   ++  I+SYR+LP    Q     R E+R R
Sbjct: 102 DNPGKLRVDPDAKLEEELVVRPTSEAIIWSTYKGWIQSYRDLPLLINQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R+ EFL ++ ++   T                             RAE+      +
Sbjct: 162 L-FLRTAEFLWQEGHTAHTT-----------------------------RAEAITEAQQM 191

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPI----PSENTDF---DDIISLNSIVEQWTAPYAAT 259
              +   A+          DFM  P+     S++  F   +D +++ ++++         
Sbjct: 192 QDIYATFAE----------DFMAMPVVKGAKSDSERFAGAEDTLTIEALMQ--------- 232

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G   + G  ++      F   +GK  YV   S+G+
Sbjct: 233 ------------------DGKALQAGTSHFLGQNFAKAFDVKFTSKEGKKEYVWATSWGV 274

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG 376
            + R++  +I +  D  G++ P  +AP ++ ++ I   +   Q   D        L   G
Sbjct: 275 -STRLIGGLIMTHSDDSGLVLPPKLAPIQVVIVPIYKDETQLQAISDKVAMFVKELRAKG 333

Query: 377 CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +DD    + G++FA  +L G P+++ +GS+ + +  VE+  R T  ++ ++ +EV+
Sbjct: 334 ASVKFDDRDTYRPGAKFAEYELKGVPVRIAIGSRDLENGTVEVARRDTFEKQTVAQDEVV 393

Query: 436 NY 437
           ++
Sbjct: 394 SF 395


>gi|295092070|emb|CBK78177.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Clostridium cf.
           saccharolyticum K10]
          Length = 650

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+H    G   +LP G +  + +    RE   + G +E+S P + +  LW  SG +D Y 
Sbjct: 261 MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKKAGYVEISTPIILNRSLWETSGHWDHYK 320

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +      ++ S  +SYR+LP    ++ L  R E   +  G
Sbjct: 321 NNMYTTVIDEEDYAI--KPMNCPGGVLVYASEPRSYRDLPLRMGELGLVHRHEKSGQLHG 378

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           +MR R F   DA+ F +TPE  K     +     +++   G K    +  R E   +G D
Sbjct: 379 LMRVRCFTQDDAHIF-MTPEQIKDEIKGVATLINQVYTLFGFKYHVELSTRPEDS-MGSD 436

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E   LA  G   +  + D +  P      D               A Y    D H E
Sbjct: 437 EDWE---LATEG---LRSALDELGLPYVVNEGD--------------GAFYGPKIDFHLE 476

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
                             +G  +  GT    + LP      + GADG+ H  + +     
Sbjct: 477 DC----------------IGRTWQCGTIQLDFQLPQRFELEYTGADGEKHRPIMIHRVVF 520

Query: 320 GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           G++ R +  +IE         +P  +AP ++ ++ I   D+   D   K+Y  LS+ G  
Sbjct: 521 GSIERFIGILIEHFAGA----FPTWLAPVQVKVLPIS--DKYA-DYAAKVYESLSEAGIR 573

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              D   E+IG +   A     P  ++VG K   +  V ++ R  G     SLE  I 
Sbjct: 574 AEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSVRSRFAGDEGASSLESFIE 631


>gi|148381087|ref|YP_001255628.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932923|ref|YP_001385460.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935084|ref|YP_001388867.1| threonyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|166223333|sp|A7FY87|SYT_CLOB1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223334|sp|A5I6L8|SYT_CLOBH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148290571|emb|CAL84700.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152928967|gb|ABS34467.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152930998|gb|ABS36497.1| threonine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 635

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 163/421 (38%), Gaps = 49/421 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH+   G   + P G    + + +  REE  + G  E+  P + +  LW +SG +D Y K
Sbjct: 255 IHEEGPGFPFFHPKGMIVRNILESFWREEHTKAGYQEIRTPLILNEALWHQSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D      P +      ++++ + SYR+LP    ++ +  R EL     G+M
Sbjct: 314 ENMYFTNIDDDDYAIKPMNCPGGILVYKNSMHSYRDLPLRLSELGIVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ + +T E  K     + +  +  F++L                    E+
Sbjct: 374 RVRCFTQDDAHLY-MTKEQIKEEVVGI-IKLIDKFYKL-----------------FGFEY 414

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V   T       S +  +          D I     + E   A Y    D H   L D 
Sbjct: 415 FVELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGPKIDFH---LKDC 471

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRV 324
           +        R  + G I   F    ++ L    ++ GADG+ H    V    YG    R 
Sbjct: 472 I-------GRTWQCGTIQLDFQMPERFDL----SYIGADGEKHRPVMVHRTIYG-SVERF 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +IE         +P  +AP ++ L+NI        D  +K+   L +    V  D  
Sbjct: 520 IGILIEQYAGA----FPTWLAPVQVKLMNITDSQY---DYLKKVEEALKENNIRVEIDTR 572

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +   A L   P  +I+G K V   KV ++ R  G    +SLEE I    +   N
Sbjct: 573 NEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKN 632

Query: 445 N 445
            
Sbjct: 633 K 633


>gi|71029934|ref|XP_764609.1| prolyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68351565|gb|EAN32326.1| prolyl-tRNA synthetase, putative [Theileria parva]
          Length = 461

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 3/172 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S GIY+ LPLG + ++ +  I + E  + GA ++S P L    +   +G       ++ +
Sbjct: 76  SSGIYTTLPLGHRIINRITNIFKVELCKLGAAQLSFPLLNPEKVVSNTGN-TVLDNDLFK 134

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHI--KSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++           T E++   + ++ +   S   LP   YQI  KFRDELR   G +R +
Sbjct: 135 VSGNGSVEYRLSGTCEDLCNIVLKNEMIPLSKLQLPVLLYQINTKFRDELRVNEGKVRLK 194

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           EFLM D YS   + + S  +Y  +  S+  +   LGL    +      I  D
Sbjct: 195 EFLMLDMYSLHSSEQCSDSTYTLVLESFANVLRLLGLNFATVNCNKNNIVSD 246



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S   +EVGH+F FGT YS      F+ +  K   + M SYGIG  R++  +I +  D  G
Sbjct: 260 SNTELEVGHLFKFGTHYSDVYGLKFEISGRKREKLYMNSYGIGINRLLNVLINNYSDEFG 319

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I  P  +AP+ +++I     D        +I   L K G  V +DD  E I ++   +  
Sbjct: 320 IKLPQLIAPYDVTII-----DSTTNGDGWEITRGLMKKGLTVLYDDRSETIKNKLLDSKR 374

Query: 398 LGFPLQVIVGSKF 410
           +G P  +I+G+  
Sbjct: 375 IGVPHILILGNSL 387


>gi|225855059|ref|YP_002736571.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|237649181|ref|ZP_04523433.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822258|ref|ZP_04598103.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|254783541|sp|C1CFK0|SYT_STRZJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225723844|gb|ACO19697.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 647

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|221232374|ref|YP_002511527.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|254783539|sp|B8ZM32|SYT_STRPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220674835|emb|CAR69409.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 647

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGAIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|148994898|ref|ZP_01823919.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|148997679|ref|ZP_01825243.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149006698|ref|ZP_01830384.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|149021279|ref|ZP_01835525.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168483499|ref|ZP_02708451.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|168487280|ref|ZP_02711788.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|168488656|ref|ZP_02712855.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|168491490|ref|ZP_02715633.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|168575182|ref|ZP_02721145.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|169834472|ref|YP_001695022.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|225859387|ref|YP_002740897.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225861459|ref|YP_002742968.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229236|ref|ZP_06962917.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254509|ref|ZP_06978095.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|307068259|ref|YP_003877225.1| threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|307127841|ref|YP_003879872.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|238688351|sp|B1I703|SYT_STRPI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783538|sp|C1C8M1|SYT_STRP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783543|sp|C1CSP6|SYT_STRZT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147756178|gb|EDK63220.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147761613|gb|EDK68577.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147926966|gb|EDK78011.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|147930380|gb|EDK81364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168996974|gb|ACA37586.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043101|gb|EDT51147.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|183569836|gb|EDT90364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183572780|gb|EDT93308.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|183574162|gb|EDT94690.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183578687|gb|EDT99215.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225720074|gb|ACO15928.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225727271|gb|ACO23122.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|306409796|gb|ADM85223.1| Threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|306484903|gb|ADM91772.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|327389816|gb|EGE88161.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332072464|gb|EGI82947.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
 gi|332072798|gb|EGI83279.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
 gi|332073965|gb|EGI84443.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332199661|gb|EGJ13736.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
 gi|332200192|gb|EGJ14265.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
          Length = 647

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|194397191|ref|YP_002038247.1| threonyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|238690846|sp|B5E6Q8|SYT_STRP4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194356858|gb|ACF55306.1| threonyl-tRNA synthetase (thrS) [Streptococcus pneumoniae G54]
          Length = 647

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|269214426|ref|ZP_05986526.2| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209844|gb|EEZ76299.1| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 643

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 154/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      V   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 261 LQDEAPGMVFWHPKGWALWQAVEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 321 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 379

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 380 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPGKRAGSD 436

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           E    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 437 EVWDKAEQGLREALTACGVEWEE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 494

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 495 PERLNAEYVTENNDRARPVML-------------------------HRAILGSL----ER 525

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ ARL   G  V  D 
Sbjct: 526 FIGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAARLQAAGFRVELDL 578

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 579 RNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 616


>gi|168493529|ref|ZP_02717672.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183576436|gb|EDT96964.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 647

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELEHYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|322807831|emb|CBZ05406.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 545

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 105/225 (46%), Gaps = 22/225 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+  D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  I+   
Sbjct: 1   MKLSKTLVHSLREDLADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKIVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y   +  ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIP----------------YVNNLEEVSEKNNGFILNFNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L ++ +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQIL-REYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF  + L+   +  E      D + +FI+  + G++ +   K
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSHIVACK 203



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 1/136 (0%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ATF    GK     +    +   ++++ VIE + D  GI+WP   + FK+ +      D
Sbjct: 400 CATFIDNKGKSKPFTIYKGFMDIYKIISWVIEQNKDELGIVWPMETSAFKVIVTIANVKD 459

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEI
Sbjct: 460 EQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEI 518

Query: 419 KHRLTGIREDMSLEEV 434
           K R +  ++++ ++++
Sbjct: 519 KLRNSKEKKEIPIDQL 534


>gi|170759933|ref|YP_001788845.1| putative prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406922|gb|ACA55333.1| putative prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 545

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 108/225 (48%), Gaps = 22/225 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSETLVHSLREDPADIEMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLECIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +        D   K    + + N+K +++         +  R+
Sbjct: 61  SKKIGGSKISIPYVNNFE--------DVSEKNNEFILNFNEKVLMF--------INFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+  ++F  + +   G+M  ++ L +  Y   L  E  K +  ++   
Sbjct: 105 NVTSYKQLPLFFYENNIEFSYKGKNNLGIMSGKQVLREHFYMV-LDEEKDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF  + L+   +  E      D + +FI+  + G++ +   K
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSSIVACK 203



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKA 356
            ATF    GK     +    +   ++++  IE + D  GI+WP   + FK  +++ N+K 
Sbjct: 400 CATFIDNKGKSKAFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKAIVTIANVKD 459

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             Q      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ V
Sbjct: 460 EQQF--KVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNV 516

Query: 417 EIKHRLTGIREDMSLEEV 434
           EIK R +  ++++ ++++
Sbjct: 517 EIKLRNSKEKKEIPIDQL 534


>gi|298503373|ref|YP_003725313.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238968|gb|ADI70099.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
          Length = 660

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 267 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 326

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 327 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 386

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 387 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 434

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 435 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 486

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 487 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 535

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 536 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 590

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 591 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 629


>gi|168179213|ref|ZP_02613877.1| threonyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182670074|gb|EDT82050.1| threonyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 635

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 163/421 (38%), Gaps = 49/421 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH+   G   + P G    + + +  REE  + G  E+  P + +  LW +SG +D Y K
Sbjct: 255 IHEEGPGFPFFHPKGMIVRNILESFWREEHTKAGYQEIRTPLILNEALWHQSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D      P +      ++++ + SYR+LP    ++ +  R EL     G+M
Sbjct: 314 ENMYFTNIDDDDYAIKPMNCPGGILVYKNSMHSYRDLPLRLSELGIVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ + +T E  K     + +  +  F++L                    E+
Sbjct: 374 RVRCFTQDDAHLY-MTKEQIKEEVVGI-IKLIDKFYKL-----------------FGFEY 414

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V   T       S +  +          D I     + E   A Y    D H   L D 
Sbjct: 415 FVELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGPKIDFH---LKDC 471

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRV 324
           +        R  + G I   F    ++ L    ++ GADG+ H    V    YG    R 
Sbjct: 472 I-------GRTWQCGTIQLDFQMPERFDL----SYIGADGEKHRPVMVHRTIYG-SVERF 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +IE         +P  +AP ++ L+NI        D  +K+   L +    V  D  
Sbjct: 520 IGILIEQYAGA----FPTWLAPVQVKLMNITDSQY---DYLKKVEEALKENNIRVEIDTR 572

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +   A L   P  +I+G K V   KV ++ R  G    +SLEE I    +   N
Sbjct: 573 NEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKN 632

Query: 445 N 445
            
Sbjct: 633 K 633


>gi|326572997|gb|EGE22976.1| threonyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 639

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 169/415 (40%), Gaps = 56/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +D+YG+
Sbjct: 255 MQEQAPGMVFWHPNGWTIWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGE 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   A ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTASEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F    +  + + N + ++ L ++   G   I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIFCTNAQIRQEALNFIKLT-LDVYKDFGFDHIQMKLSTRPEKRVGAD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 L D  E  +    D +D      N   D           W    A     +  K
Sbjct: 431 -----ELWDLAEQAL---ADALD------NAGLD-----------WELQ-AGEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           +  SL +          +G ++  GT    ++LP  + A F G  G ++  V +    +G
Sbjct: 465 IEFSLQDC---------IGRVWQCGTLQLDFNLPERLDAEFVGESGERERPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   + G   ++P  +AP ++ ++NI        D+   + ++L+  G    
Sbjct: 516 SFERFIGILIEHYAG---LFPAWLAPQQVVVMNITDKQA---DSVGDVVSKLNAKGYRAI 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E+IG +     L   P  +I+G K V    V ++ R       MSL++ I
Sbjct: 570 SDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRTGDNLGSMSLDDFI 624


>gi|301794619|emb|CBW37067.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 647

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|327405532|ref|YP_004346370.1| prolyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327321040|gb|AEA45532.1| prolyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 491

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 174/432 (40%), Gaps = 98/432 (22%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGK 91
           H   KG+    P G    +N+  I+  +   TG      P L   + L  E+   + + K
Sbjct: 28  HSDVKGMMVIKPYGYAIWENMRDILDAKFKETGHQNAYFPLLIPKSYLSKEASHIEGFAK 87

Query: 92  EML------RLADRN------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           E         ++D N            ++ +I  PT E ++ + ++  I+SYR+LP    
Sbjct: 88  ECAVVTHYRLMSDPNGGGVIVDPSAKLEEELIVRPTSETIIWNSYKKWIQSYRDLPILIN 147

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           Q     R E++ R   +R+ EFL ++ ++   T E +     +M                
Sbjct: 148 QWANVVRWEMKTRL-FLRTSEFLWQEGHTAHATKEEAIKETEQML--------------- 191

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI----PSENTDF---DDIISLN 246
                      D+  EF             ++ +M  P+     +E+  F   DD   + 
Sbjct: 192 -----------DVYAEF-------------AETYMAMPVIKGHKTESERFAGADDTYCIE 227

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           S+++   A  A TS                            + G  ++      +  A 
Sbjct: 228 SMMQDGKALQAGTS---------------------------HFLGQNFAKAFDVKYSDAQ 260

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRD 363
           GK  YV   S+G+ + R++ A+I +  D +G++ P ++AP ++ ++ I   D   Q+  D
Sbjct: 261 GKLEYVWATSWGV-STRLMGALIMTHSDDEGLVLPPALAPIQVVIVPIYRTDEELQLIND 319

Query: 364 ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           A  KI A L  +   V +D D  ++ G +FA  +  G P+++ +G + +++  VEI  R 
Sbjct: 320 AVAKITAELKDLKVKVKYDSDDQKRPGWKFAEHEAKGVPVRLAIGPRDLANGVVEIARRD 379

Query: 423 TGIREDMSLEEV 434
           T  +  M+++ +
Sbjct: 380 TKEKYAMNIDNI 391


>gi|153814564|ref|ZP_01967232.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|317501270|ref|ZP_07959474.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145848058|gb|EDK24976.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|316897337|gb|EFV19404.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 641

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 172/442 (38%), Gaps = 55/442 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +Y   I +   RD      +L L   M+ +   G   +LP G    + +    RE   R
Sbjct: 228 EEYLTMIEEAKKRDHRKLGKELGLF--MMREEGPGFPFFLPNGMVLKNTLLDYWREIHRR 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G +E++ P + S  LW  SG +D Y + M   + D  D A+   P +      ++ S  
Sbjct: 286 AGYVEINTPIMLSRHLWETSGHWDHYKENMYTTVVDEEDFAI--KPMNCPGGILVYESEP 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  K     +    
Sbjct: 344 RSYRDLPIRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIKDEIKGVVKLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K                  + V   T       S +  +    +  +  DD
Sbjct: 403 DEVYSLFGFK------------------YHVELSTRPDDSMGSDEDWEMATDALRSALDD 444

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLPM 298
           I     + E   A Y    D H E   DS             +G  +  GT    + LP+
Sbjct: 445 IGLPYIVNEGDGAFYGPKIDFHLE---DS-------------IGRTWQCGTIQLDFQLPL 488

Query: 299 --SATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                + GADG+ H  + +     G++ R +  +IE         +P  +AP ++ ++ I
Sbjct: 489 RFELEYTGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGA----FPTWLAPVQVKVLPI 544

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D+   D   K+   L + G     D   E+IG +   A +   P  ++VG+K   + 
Sbjct: 545 S--DKYL-DYAGKVLEDLKEAGIRAEIDSRAEKIGYKIREAQMKKIPYMLVVGAKEEEEG 601

Query: 415 KVEIKHRLTGIREDMSLEEVIN 436
           KV ++ R  G      LEE I 
Sbjct: 602 KVSVRSRFAGDEGQCGLEEFIE 623


>gi|150025459|ref|YP_001296285.1| prolyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|166980123|sp|A6GZF3|SYP_FLAPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149772000|emb|CAL43476.1| Proline--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 492

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 152/361 (42%), Gaps = 73/361 (20%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  GK M+    + ++ +I  PT E ++   ++  I+SYR+LP    Q     R E+R R
Sbjct: 102 DKPGKLMVDPNAKLEEELIVRPTSEAIIWSTYKGWIQSYRDLPLLINQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R+ EFL ++ ++   T + +     KM   Y                         
Sbjct: 162 L-FLRTAEFLWQEGHTAHATRKEAIEESEKMMNVY------------------------- 195

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  AD        +++FM  P+         I  L +  E+    +A   + +   
Sbjct: 196 -------AD-------FAQNFMAIPV---------IKGLKTETER----FAGAEETY--- 225

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             ++L ++     + ++ G   + G  ++      F  A+GK  +V   S+G+ + R++ 
Sbjct: 226 CIEALMQD----GKALQAGTSHFLGQNFAKAFDVKFANAEGKQEHVWGTSWGV-STRLMG 280

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------RLSKVGCDV 379
           A++ +  D  G++ P ++AP ++ ++ I   D+      EKI A       +  K+   V
Sbjct: 281 ALVMTHSDDNGLVLPPNLAPIQVVIVPIFKTDE----EFEKISALANDLISQFKKLNISV 336

Query: 380 FWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   Q  G +FA  +L G P+++ +G K + +   EI  R T  +E    E ++ Y 
Sbjct: 337 KFDNRTTQKPGFKFAEWELKGVPVRIAIGPKDLENETFEIARRDTLTKEVKPKEGIVKYI 396

Query: 439 S 439
           S
Sbjct: 397 S 397


>gi|116515338|ref|YP_816901.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|161410743|ref|NP_359065.2| threonyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|73621971|sp|Q8DNX8|SYT_STRR6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122278253|sp|Q04JD7|SYT_STRP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116075914|gb|ABJ53634.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 647

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELVSGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|226950568|ref|YP_002805659.1| threonine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|254783516|sp|C1FKN0|SYT_CLOBJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226841746|gb|ACO84412.1| threonine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 635

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 163/421 (38%), Gaps = 49/421 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH+   G   + P G    + + +  REE  + G  E+  P + +  LW +SG +D Y K
Sbjct: 255 IHEEGPGFPFFHPKGMIVRNILESFWREEHTKAGYQEIRTPLILNEALWHQSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D      P +      ++++ + SYR+LP    ++ +  R EL     G+M
Sbjct: 314 ENMYFTNIDDGDYAIKPMNCPGGILVYKNSMHSYRDLPLRLSELGIVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ + +T E  K     + +  +  F++L                    E+
Sbjct: 374 RVRCFTQDDAHLY-MTKEQIKEEIVGI-IKLIDKFYKL-----------------FGFEY 414

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V   T       S +  +          D I     + E   A Y    D H   L D 
Sbjct: 415 FVELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGPKIDFH---LKDC 471

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRV 324
           +        R  + G I   F    ++ L    ++ GADG+ H    V    YG    R 
Sbjct: 472 I-------GRTWQCGTIQLDFQMPERFDL----SYIGADGEKHRPVMVHRTIYG-SVERF 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +IE         +P  +AP ++ L+NI        D  +K+   L +    V  D  
Sbjct: 520 IGILIEQYAGA----FPTWLAPVQVKLMNITDSQY---DYLKKVEEALKENNIRVEIDTR 572

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +   A L   P  +I+G K V   KV ++ R  G    +SLEE I    +   N
Sbjct: 573 NEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKN 632

Query: 445 N 445
            
Sbjct: 633 K 633


>gi|89101224|ref|ZP_01174050.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084053|gb|EAR63228.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 408

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 172/400 (43%), Gaps = 36/400 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I +++ R G   +  P + + +L+  SG +D Y ++M  +
Sbjct: 29  QGLPMWLPKGATIRRIVERYIVDKEQRLGYEHVYTPVMANVELYKTSGHWDHYQEDMFPV 88

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I+++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 89  MEMDNEELVLRPMNCPHHMMIYKNSIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    ++    R         LS+      D
Sbjct: 149 TLNDAHIF-VRPDQIKEEFKRVVHLILEVYKDFNIEDYSFR---------LSYR-----D 193

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ + + D M     S   +  D + L+    E   A Y    DV    +  +L + 
Sbjct: 194 PQDTEKYFNDDEMWEKAQSMLKEAMDELGLDYYEAEGEAAFYGPKLDV---MVKTALGKE 250

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    ++ G DGK H   +   G+ +   R VA +IE  
Sbjct: 251 ETLSTAQLD----FLLPERFDL----SYVGEDGKQHRPVVIHRGVVSTMERFVAFLIE-- 300

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            + KG  +P  +AP ++ +I +        D  +K+   L   G  V  D   E+IG + 
Sbjct: 301 -EYKG-AFPTWLAPVQVQVIPVSPDAHF--DYAKKVQEELQAQGYRVELDARNEKIGYKI 356

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             A +   P  +++G K VSD+ V ++       E MS +
Sbjct: 357 REAQMQKIPYMLVLGDKEVSDNAVNVRKYGEQKSETMSFD 396


>gi|15459130|gb|AAL00276.1| Threonyl-tRNA synthetase 1 [Streptococcus pneumoniae R6]
          Length = 660

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 267 MISQEVGQGLPFWLPNGATIRRELERYIVNKELVSGYQHVYTPPLASVELYKTSGHWDHY 326

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 327 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 386

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 387 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 434

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 435 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 486

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 487 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 535

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 536 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 590

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 591 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 629


>gi|288818602|ref|YP_003432950.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788002|dbj|BAI69749.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752193|gb|ADO45676.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 637

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 164/420 (39%), Gaps = 53/420 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +    REE  + G   +  P + +A LW  SG  D Y   M    
Sbjct: 261 GLVLWLPKGGIYRKILEDYWREEHLKRGYQFVYTPHIGNAKLWQISGHLDYYRPNMFSSM 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             + +     P +      I++S ++SY+ LP    ++   +R E+     G+MR R F 
Sbjct: 321 QVDQEEYFVKPMNCPFHIAIYKSKVRSYKELPLKLAELGTVYRYEMSGVLHGLMRVRGFT 380

Query: 157 MKDAY--SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             DA+    +   E   H   +  +S LR F   G +                 EF V  
Sbjct: 381 QDDAHIICTEEQVEDVIHQTLEFAISMLRDF---GFE-----------------EFKVYI 420

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            T       S D       +EN       SL   VE    PY    D      +    + 
Sbjct: 421 STKPEDAIGSPDQWQL---AEN-------SLKKAVESMGIPYQI--DEGGGAFYGPKIDV 468

Query: 275 KRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAV 328
           K   A    +G ++   T    ++LP      + G D K H   M    + G++     +
Sbjct: 469 KIKDA----IGRLWQCSTIQFDFNLPERFDMEYVGPDNKRHRPYMIHRALLGSIERFTGI 524

Query: 329 IESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +   + G   +W   ++P ++ LI I +AH     D  +K+  RL + G  V  DD  E+
Sbjct: 525 LLEHYAGALPVW---LSPVQVRLIPIGEAH----MDYTKKLENRLKEEGLRVEVDDRDER 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           + ++   A++   P  +++G K VS  K+ ++ +  G    MS+EE I +   +  +  P
Sbjct: 578 LSAKIRDAEVQKIPYVIVIGDKEVSQGKISVRSKKEGNLGSMSVEEFIKHIKDKIKSKAP 637


>gi|261402296|ref|YP_003246520.1| prolyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261369289|gb|ACX72038.1| prolyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 464

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 159/431 (36%), Gaps = 95/431 (22%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL----------------W 80
           KG   +LP G K       +IR+  + TG  E   P L   DL                W
Sbjct: 33  KGCGVYLPYGFKIRRYAFELIRKLLDETGHDETLFPMLIPEDLLAKEAEHIKGFEDEVYW 92

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V  G     GK  L      D  +   PT E  +  + R  +K + +LP   YQI   FR
Sbjct: 93  VTHG-----GKTPL------DVKLALRPTSETPIYYMMRLWVKVHTDLPIKVYQIVNTFR 141

Query: 141 DELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            E +    ++R RE +  K+A++   T E ++    +    Y + F  LG   IP     
Sbjct: 142 YETKHTRPLIRLREIMTFKEAHTAHSTKEEAEKQVEEAISIYKKFFDVLG---IPHLVSK 198

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P                        ++  FP       FD I     +++         
Sbjct: 199 RP------------------------EWDKFPGAEYTMAFDTIFPDGRVMQ--------I 226

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           + VHN                          G  +S      F+   G   +     YGI
Sbjct: 227 ATVHN-------------------------LGQNFSKTFEIIFETPTGDKDFAYQTCYGI 261

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGC 377
              RV+A++I    D KG+I P  VAP +I ++ +  K   ++  +  ++IY RL K   
Sbjct: 262 SD-RVIASIIAIHGDEKGLILPPVVAPLQIVIVPLIFKGKKEIVMEKSKEIYERL-KDKY 319

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR---EDMSLEEV 434
            V+ DD   + G +F   ++ G PL++ VG K +   K+ I  R T  +   ED  LE+ 
Sbjct: 320 RVYIDDRDIRPGKKFYDWEIKGVPLRIEVGPKDIESGKITIFRRDTMEKFQVEDEQLEDE 379

Query: 435 INYASHRFSNN 445
           I    +    N
Sbjct: 380 IEKTLNNIMEN 390


>gi|15901467|ref|NP_346071.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111657539|ref|ZP_01408280.1| hypothetical protein SpneT_02001261 [Streptococcus pneumoniae
           TIGR4]
 gi|149011514|ref|ZP_01832761.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|303253984|ref|ZP_07340104.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303258557|ref|ZP_07344537.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262647|ref|ZP_07348587.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303263586|ref|ZP_07349508.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303266970|ref|ZP_07352845.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303269866|ref|ZP_07355610.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|22654131|sp|Q97PI4|SYT_STRPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14973120|gb|AAK75711.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|147764504|gb|EDK71435.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|301802334|emb|CBW35088.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302599072|gb|EFL66098.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636203|gb|EFL66698.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302640058|gb|EFL70513.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302640601|gb|EFL71004.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302643487|gb|EFL73759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302646624|gb|EFL76849.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 647

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELVSGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|257455909|ref|ZP_05621126.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257446655|gb|EEV21681.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 642

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 161/398 (40%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +++YG 
Sbjct: 255 MQEEAPGMVFWHPNGWTMWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWENYGD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    +++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTHSEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F  + E  K          L ++   G   + M+  + P       E
Sbjct: 373 MRVRGFTQDDAHIF-CSNEQIKQEAQDFIKLTLDVYKDFGFDDVQMKLSTRP-------E 424

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             V AD  E      KD  D              +L++    W          +  K+  
Sbjct: 425 KRVGAD--ELWDLAEKDLAD--------------ALDNAGLDWQY-LPGEGAFYGPKIEF 467

Query: 270 SLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMR 323
           SL +          +G ++  GT    ++LP  + A F    G ++  V +    +G+  
Sbjct: 468 SLKDC---------LGRVWQCGTLQLDFNLPERLGAEFVNEQGERERPVMLHRAILGSFE 518

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G   +W   +AP ++ ++NI  +      AC+K+  +L++ G  V  D 
Sbjct: 519 RFIGMLIEHYAGWMPVW---LAPQQVVVMNITDNQA---PACQKVAEQLNQAGLRVITDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  +++G K V  ++V ++ R
Sbjct: 573 RNEKIGFKIRERTLERIPYMIVMGDKEVESNQVNVRTR 610


>gi|289192180|ref|YP_003458121.1| prolyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938630|gb|ADC69385.1| prolyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 455

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 162/420 (38%), Gaps = 73/420 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP G K       IIR+  + +G  E   P L   DL   E+     +  E+  
Sbjct: 24  KGCGVYLPYGFKIRRYTFEIIRKLLDESGHDETLFPMLIPEDLLAKEAEHIKGFEDEVYW 83

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  +  + +  +K + +LP   YQI   FR E +    ++R
Sbjct: 84  VTHGGKTPLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKVYQIVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +  K+A++   T E ++    +    Y + F  LG   IP      P         
Sbjct: 144 LREIMTFKEAHTAHSTKEEAEEQVKQAISIYKKFFDTLG---IPYLISKRP--------- 191

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP       FD I     +++         + VHN      
Sbjct: 192 ---------------EWDKFPGAEYTMAFDTIFPDGRVMQ--------IATVHN------ 222

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                               G  +S      F+   G   Y     YGI   RV+A++I 
Sbjct: 223 -------------------LGQNFSKTFEILFETPTGGKDYAYQTCYGISD-RVIASIIA 262

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG+I P  VAP +I ++ +  K  ++V  +  +++Y +L K    V+ DD   + 
Sbjct: 263 IHGDEKGLILPPIVAPIQIVIVPLIFKGKEEVVMEKAKELYEKL-KGKYRVYIDDRDIRP 321

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR---EDMSLEEVINYASHRFSNN 445
           G +F   ++ G PL++ +G K + + K+ +  R T  +   ++  LEEVI    +    N
Sbjct: 322 GRKFNDWEIKGVPLRIEIGPKDIENKKITLFRRDTMEKFQVDETQLEEVIEKTLNNIMEN 381


>gi|306829065|ref|ZP_07462255.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304428151|gb|EFM31241.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 647

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDCGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|283797704|ref|ZP_06346857.1| threonine--tRNA ligase [Clostridium sp. M62/1]
 gi|291074600|gb|EFE11964.1| threonine--tRNA ligase [Clostridium sp. M62/1]
          Length = 650

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 162/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+H    G   +LP G +  + +    RE   + G +E+S P + +  LW  SG +D Y 
Sbjct: 261 MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKKAGYVEISTPIILNRSLWETSGHWDHYK 320

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +      ++ S  +SYR+LP    ++ L  R E   +  G
Sbjct: 321 NNMYTTVIDEEDYAI--KPMNCPGGVLVYASEPRSYRDLPLRMGELGLVHRHEKSGQLHG 378

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           +MR R F   DA+ F +TPE  K     +      ++   G K    +  R E   +G D
Sbjct: 379 LMRVRCFTQDDAHIF-MTPEQIKDEIKGVATLINEVYTLFGFKYHVELSTRPEDS-MGSD 436

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E   LA  G   +  + D +  P      D               A Y    D H E
Sbjct: 437 EDWE---LATEG---LRSALDELGLPYVVNEGD--------------GAFYGPKIDFHLE 476

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
                             +G  +  GT    + LP      + GADG+ H  + +     
Sbjct: 477 DC----------------IGRTWQCGTIQLDFQLPQRFELEYTGADGEKHRPIMIHRVVF 520

Query: 320 GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           G++ R +  +IE         +P  +AP ++ ++ I   D+   D   K+Y  LS+ G  
Sbjct: 521 GSIERFIGILIEHFAGA----FPTWLAPVQVKVLPIS--DKYA-DYAAKVYESLSEAGIR 573

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              D   E+IG +   A     P  ++VG K   +  V ++ R  G     SLE  I 
Sbjct: 574 AEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSVRSRFAGDEGASSLESFIE 631


>gi|146319020|ref|YP_001198732.1| threonyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146321228|ref|YP_001200939.1| threonyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253752085|ref|YP_003025226.1| threonyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753910|ref|YP_003027051.1| threonyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|166225507|sp|A4W2F0|SYT_STRS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225509|sp|A4VW43|SYT_STRSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145689826|gb|ABP90332.1| Threonyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145692034|gb|ABP92539.1| Threonyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251816374|emb|CAZ52005.1| threonyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251820156|emb|CAR46495.1| threonyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292558668|gb|ADE31669.1| Threonyl-tRNA synthetase [Streptococcus suis GZ1]
 gi|319758452|gb|ADV70394.1| threonyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 650

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 173/412 (41%), Gaps = 36/412 (8%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 314 SEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPVRIAELGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDL 206
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R +   P   + 
Sbjct: 374 GLQRVREMTLNDGHIF-VTPEQIQEEFKKALQLIIDVYADFNLNDYRFRLSYRDPEDKEK 432

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            ++   + +  +  +  + D M         D+ +        E   A Y    D+   +
Sbjct: 433 YYDNDEMWENAQRMLKGAMDEM-------GVDYFE-------AEGEAAFYGPKLDI---Q 475

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           +  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I  M   
Sbjct: 476 VKTALGNEETLSTIQLD----FLLPERFGL----TYIGADGEEHRPVMIHRGVISTMERF 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++  ++ G    W   +AP ++++I I     +  D   K+   L   G  V  D+  
Sbjct: 528 TAILIETYKGAFPTW---LAPTQVTMIPISVEAHL--DYAWKVAKELQDRGVRVHVDERN 582

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           E++  +   +     P Q+IVG K + D+ V ++   +   +  S+ E +++
Sbjct: 583 EKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVRRYGSKATQTQSVSEFVDH 634


>gi|331089982|ref|ZP_08338872.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402896|gb|EGG82462.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 641

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 163/415 (39%), Gaps = 53/415 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +   G   +LP G    + +    RE   R G +E++ P + S  LW  SG +D Y 
Sbjct: 253 MMREEGPGFPFFLPNGMVLKNTLLDYWREIHRRAGYVEINTPIMLSRHLWETSGHWDHYK 312

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   + D  D A+   P +      ++ S  +SYR+LP    ++ L  R E   +  G
Sbjct: 313 ENMYTTVVDEEDFAI--KPMNCPGGILVYESEPRSYRDLPIRMGELGLVHRHEKSGQLHG 370

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           +MR R F   DA+ F +TPE  K     +      ++   G K                 
Sbjct: 371 LMRVRCFTQDDAHIF-MTPEQIKDEIKGVVKLIDEVYSLFGFK----------------- 412

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            + V   T       S +  +    +  +  DDI     + E   A Y    D H E   
Sbjct: 413 -YHVELSTRPDDSMGSDEDWEMATDALRSALDDIGLPYIVNEGDGAFYGPKIDFHLE--- 468

Query: 269 DSLPENKRVSARGIEVGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSYGIGAM 322
           DS             +G  +  GT    + LP+     + GADG+ H  + +     G++
Sbjct: 469 DS-------------IGRTWQCGTIQLDFQLPLRFELEYTGADGEKHRPIMIHRVVFGSI 515

Query: 323 -RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +  +IE         +P  +AP ++ ++ I   D+   D   K+   L + G     
Sbjct: 516 ERFIGILIEHFAGA----FPTWLAPVQVKVLPIS--DKYL-DYAGKVLEDLKEAGIRAEI 568

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +   A +   P  ++VG+K   + KV ++ R  G      LEE I 
Sbjct: 569 DSRAEKIGYKIREAQMKKIPYMLVVGAKEEEEGKVSVRSRFVGDEGQCGLEEFIE 623


>gi|218438366|ref|YP_002376695.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|218171094|gb|ACK69827.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 608

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 177/423 (41%), Gaps = 56/423 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG + +Y ++M  + 
Sbjct: 222 GLPLWTPKGAIIRSTLEDFLKKEQIKRGYLPVVTPHIARIDLFKISGHWQNYKEDMFPMM 281

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
                +  N+   +  P +      I++S ++SYR+LP    +    +R E      G+ 
Sbjct: 282 AEDQESALNEMGFVLKPMNCPFHIQIYKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLT 341

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGG 204
           R R F + D++ F +TPE  +  +  +    L +F+ L LK+   R      A    IGG
Sbjct: 342 RVRGFTVDDSHLF-VTPEQLEEEFLSVVDLILSVFNSLQLKNFKARLSFRDPASDKYIGG 400

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D                       D    +EN     +  LN  +E + AP  A    + 
Sbjct: 401 D-----------------------DVWNKAENAIRSAVQKLN--MEHFEAPGEAA--FYG 433

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
            KL D +   K    R  ++G +      Y+LP      +   DG +   V +     G+
Sbjct: 434 PKL-DFI--FKDALEREWQLGTV---QVDYNLPERFDLEYVAEDGTRKRPVMIHRAPFGS 487

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +  +  ++   + G   +W   +AP ++ L+ + +  Q+  D  +++ A++   G     
Sbjct: 488 LERLVGILIEEYAGDFPLW---LAPIQVRLLPV-SDPQL--DYAKQVAAQMRSQGIRAEA 541

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  GE++G     A+    P+  +VG+K V  + + I+ R +G    M++ EVI   +  
Sbjct: 542 DTSGERLGKMIRNAEKQKIPVMGVVGAKEVESNTLSIRTRASGELGTMAVNEVIEKVTEA 601

Query: 442 FSN 444
            +N
Sbjct: 602 IAN 604


>gi|225571168|ref|ZP_03780166.1| hypothetical protein CLOHYLEM_07256 [Clostridium hylemonae DSM
           15053]
 gi|225159999|gb|EEG72618.1| hypothetical protein CLOHYLEM_07256 [Clostridium hylemonae DSM
           15053]
          Length = 480

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 176/438 (40%), Gaps = 87/438 (19%)

Query: 14  NPRDAEIAS-HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            PRD + A  +  ++R   +  +S  KG  ++LP G    + + A + +    TG   + 
Sbjct: 12  TPRDEDFAQWYTDVVREAELCDYSSVKGCLNYLPNGYAIWELIQADLDKRFKETGVENVY 71

Query: 71  VPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           +PTL   +L   E+   + +  E+  +     +R  + +   PT E +  D++   ++SY
Sbjct: 72  LPTLIPENLLEKEADHVEGFAPEVAWVTHGGMERLQERLCIRPTSETLFCDLWSKTVQSY 131

Query: 126 RNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           R+LP  + Q    L++    RP    +RSREFL ++ ++   T       Y +     ++
Sbjct: 132 RDLPKVWNQWNSVLRWEKTTRP---FLRSREFLWQEGHTLHAT-------YEEAEERTIQ 181

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS----ENTDF 239
           +FH                         V  D       C K+ +  P  S    E+  F
Sbjct: 182 MFH-------------------------VYED-------CYKETLAIPFVSGRKAEHEKF 209

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               D  ++ +++    A  +ATS                            +FG+ +  
Sbjct: 210 AGAQDTYTIEALMHDGKALQSATS---------------------------HFFGSGFPD 242

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                +   + + H     S+G  + R + A+I    D  G++ P  VAP +  +I I  
Sbjct: 243 AFDIKYVDKNNQLHSAYETSWG-WSTRSIGAIIMVHGDDSGLVLPPHVAPVECRIIPIAQ 301

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   D    +   L K G  V  DD  +  G +F+  ++LG P ++ +G K +  ++V
Sbjct: 302 HKEGVLDRANVLLDELKKAGYRVKIDDSEKSPGWKFSEQEMLGIPTRIEIGPKDIEKNQV 361

Query: 417 EIKHRLTGIREDMSLEEV 434
            +  R T  +  +SL+E+
Sbjct: 362 VVVRRDTREKIIVSLDEI 379


>gi|149001905|ref|ZP_01826859.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759714|gb|EDK66704.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 435

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 42  MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 101

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 102 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 161

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 162 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 209

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 210 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 261

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 262 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 310

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 311 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 365

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 366 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 404


>gi|182684576|ref|YP_001836323.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|182629910|gb|ACB90858.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 660

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 267 MISQEVGQGLPFWLPNGATIRRELERYIVNKELVSGYQHVYTPPLASVELYKTSGHWDHY 326

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 327 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 386

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 387 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 434

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 435 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 486

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 487 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 535

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 536 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 590

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 591 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 629


>gi|313677792|ref|YP_004055788.1| prolyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312944490|gb|ADR23680.1| prolyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 491

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 143/336 (42%), Gaps = 65/336 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +R+ ++SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETIIWNTYRNWVQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T + +     +M   Y                       D + EF+ L       
Sbjct: 174 HTAHATKQEAIEETERMINIY----------------------ADFAEEFMAL------- 204

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                     P+         I  L S  E+    +A   + +     + L ++     +
Sbjct: 205 ----------PV---------IKGLKSESER----FAGALETY---CIEGLMQD----GK 234

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A++ +  D +G++ 
Sbjct: 235 ALQAGTSHFLGQNFAKAFDVKFATKEGKQEFVWGTSWGV-STRLMGALVMAHSDDEGLVL 293

Query: 341 PDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ ++ I   D   Q   +  E +   L K    V +DD    + G +FA  +
Sbjct: 294 PPRLAPIQVVIVPIYKTDEEQQKITEVAENLRKSLKKKRITVKFDDRDTHKPGFKFAEWE 353

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           L G PL++ +G + + +  VE+  R T  ++ +S+E
Sbjct: 354 LKGVPLRIAIGPRDLDNGTVELARRDTKEKQTVSIE 389


>gi|326574765|gb|EGE24699.1| threonyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 639

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 170/415 (40%), Gaps = 56/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +D+YG+
Sbjct: 255 MQEQAPGMVFWHPNGWTIWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGE 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   A ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTASEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F    +  + + N + ++ L ++   G   I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIFCTNAQIRQEALNFIKLT-LDVYKDFGFDHIQMKLSTRPEKRVGAD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 L D  E  +    D +D      N   D           W    A     +  K
Sbjct: 431 -----ELWDLAEQAL---ADALD------NAGLD-----------WELQ-AGEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           +  SL +          +G ++  GT    ++LP  ++A F G  G ++  V +    +G
Sbjct: 465 IEFSLQDC---------IGRVWQCGTLQLDFNLPERLNAEFVGESGERERPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   + G   ++P  +AP ++ ++NI        D+   + ++L+  G    
Sbjct: 516 SFERFIGILIEHYAG---LFPTWLAPQQVVVMNITDKQA---DSVGDVVSKLNAKGYRAI 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E+IG +     L   P  +I+G K V    V ++ R       M+L++ I
Sbjct: 570 SDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRTGDNLGSMNLDDFI 624


>gi|283769478|ref|ZP_06342374.1| threonine--tRNA ligase [Bulleidia extructa W1219]
 gi|283103746|gb|EFC05132.1| threonine--tRNA ligase [Bulleidia extructa W1219]
          Length = 584

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 180/442 (40%), Gaps = 66/442 (14%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIR 58
           P D E+ ++  +L       H K                G+  WLP G      ++  I 
Sbjct: 163 PTDTELEAYLQVLEEAKERDHRKLGKDLKMFLFSETVGSGLPMWLPNGFTVRRLLSDYIM 222

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E++   G   +  P++ S  L+  SG    Y ++M  + +R+  + +  P +      I+
Sbjct: 223 EKEIALGYEHVLTPSVASTKLYEVSGHLAHYQEDMFPIMERDGDSYVLRPMNCPEHMIIY 282

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYR+LP    +I   FR E      G+ RSR F   D++ F L P+        +
Sbjct: 283 KASLHSYRDLPVRIAEIAHDFRFEASGALTGIERSRSFTQNDSHIF-LRPDQIAEEIKNV 341

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +++  G K    R              + L D   T  +   D  D    SEN 
Sbjct: 342 TKLILDVYNDFGFKDYSFR--------------LSLRDLNNTDKYFGND--DLWTRSEN- 384

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
                  L  ++++   PY    +   E  F     + +V +    +GH     T    Y
Sbjct: 385 ------ELREVLKEMKVPYY---EAEGEAAFYGPKIDVQVKS---ALGHDVTLSTIQLDY 432

Query: 295 SLPMSATFKGADGKDHYVQ---MGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            LP     +  +  +  V+   +    +G++ R VA ++E +   KG++ P  +AP ++ 
Sbjct: 433 QLPERFELEYVNKDNQKVRPVVIHRAILGSLDRFVAFLLEET---KGVL-PLWLAPLQVE 488

Query: 351 LI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +I  N +AH     D   KI   L + G     DD  E++G +   A +   P+Q++VG+
Sbjct: 489 VIPVNSEAHG----DYASKINRALKREGIRSHLDDRNEKLGYRIREAQMNKVPIQIVVGN 544

Query: 409 KFVSDSKVEIKHRLTGIREDMS 430
           + + +  V +  R  G +E+++
Sbjct: 545 RDIENETVTV--RTYGSKEEVT 564


>gi|315612715|ref|ZP_07887626.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314825|gb|EFU62866.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 647

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDCGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|307150016|ref|YP_003885400.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306980244|gb|ADN12125.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 608

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 179/428 (41%), Gaps = 64/428 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G + +  P L   DL+  SG + +Y ++M  + 
Sbjct: 222 GLPLWTPKGTIIRTTLEEFLKKEQVKRGYLPVVTPHLARVDLFKISGHWQNYKEDMFPMM 281

Query: 98  DRNDKAMIY------GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             ++++ ++       P +      I++S ++SYR+LP    +    +R E      G+ 
Sbjct: 282 AEDEESALHEIGFVLKPMNCPFHIQIYKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLT 341

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGG 204
           R R F + D++ F +TPE  +  +  +    L +F  L LK+   R      A    IGG
Sbjct: 342 RVRGFTVDDSHLF-VTPEQLEEEFLSVVDLILSVFKSLQLKNFKARLSFRDPASDKYIGG 400

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D                       D    +EN     +  +N  +E + AP  A    + 
Sbjct: 401 D-----------------------DVWNKAENAIRSAVQKMN--MEHFEAPGEAA--FYG 433

Query: 265 EKL----FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSY 317
            KL     D+L        R  ++G +      Y+LP      +   DG +   V +   
Sbjct: 434 PKLDFIFQDAL-------EREWQLGTV---QVDYNLPERFDLEYVAEDGSRKRPVMIHRA 483

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G++  +  ++   + G   +W   +AP ++ L+ + +  Q+  D  +++ A+L   G 
Sbjct: 484 PFGSLERLVGILIEEYAGDFPLW---LAPIQVRLLPV-SDPQL--DFAKEVAAQLLSQGI 537

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D  GE++G     A+    P+  +VG+K V  + + I+ R +G    +++ EVI  
Sbjct: 538 RAEADTSGERLGKMIRNAEKQKIPVMAVVGAKEVESNTLSIRTRASGELGTIAVSEVIEK 597

Query: 438 ASHRFSNN 445
            +   +N+
Sbjct: 598 VTEAITNH 605


>gi|253755215|ref|YP_003028355.1| threonyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251817679|emb|CAZ55427.1| threonyl-tRNA synthetase [Streptococcus suis BM407]
          Length = 650

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 173/412 (41%), Gaps = 36/412 (8%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 314 SEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPVRIAELGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDL 206
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R +   P   + 
Sbjct: 374 GLQRVREMTLNDGHIF-VTPEQIQEEFKKALQLIIDVYADFNLNDYRFRLSYRDPEDKEK 432

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            ++   + +  +  +  + D M         D+ +        E   A Y    D+   +
Sbjct: 433 YYDNDEMWENAQRMLKGAMDEM-------GVDYFE-------AEGEAAFYGPKLDI---Q 475

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           +  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I  M   
Sbjct: 476 VKTALGNEETLSTIQLD----FLLPERFGL----TYIGADGEEHRPVMIHRGVISTMERF 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++  ++ G    W   +AP ++++I I     +  D   K+   L   G  V  D+  
Sbjct: 528 TAILIETYKGAFPTW---LAPTQVTMIPISVEAHL--DYAWKVAKELQDRGVRVHVDERN 582

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           E++  +   +     P Q+IVG K + D+ V ++   +   +  S+ E +++
Sbjct: 583 EKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVRRYGSKATQTQSVSEFVDH 634


>gi|66806197|ref|XP_636821.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74852684|sp|Q54J66|SYTC1_DICDI RecName: Full=Probable threonyl-tRNA synthetase 1, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|60465220|gb|EAL63315.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 710

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 183/431 (42%), Gaps = 50/431 (11%)

Query: 16  RDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           R+A +  H+ + +   +   H +S G   +LP G +  + +   IREE +R G  E+  P
Sbjct: 310 REAALRDHRNVGKAQELFFFHPYSPGSAFFLPHGTRIYNKLVEFIREEYHRRGFTEVISP 369

Query: 73  TLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           ++ S  LW +SG +  Y + M  L  D+++ ++   P +      +F S  +SYR LP  
Sbjct: 370 SIFSQKLWEQSGHWQKYSENMFVLPVDKDNFSL--KPMNCPGHCLMFGSRQRSYRELPLR 427

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F    +  R+EL     G+ R R+F   DA+ F  T E  +   N            LG 
Sbjct: 428 FADFGVLHRNELAGALTGLTRVRKFQQDDAHIF-CTTEMIEDEINSC----------LGF 476

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
               M+   G  G +   E     D   GE   +   D  +  +      F     LN  
Sbjct: 477 ----MQYVYGIFGFEFGLELSTRPDNFLGEIAQW---DIAEASLEKALNKFGKPWKLNP- 528

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +  A Y    D+H   + D L  + + +   ++      F  +Y    +A  K     
Sbjct: 529 --KDGAFYGPKIDIH---ITDCLKRSHQCATIQLDFQLPIRFDLEYQSDDAAELKKRPVI 583

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEK 367
            H   +GS      R++A +IE +    G  WP  V+P +  ++ + K H++  +  C++
Sbjct: 584 IHRAILGS----VERMMAILIEHT----GGKWPLWVSPRQAIVVTVNKTHNEYGQKVCKE 635

Query: 368 IYARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           I    S  G  CD+  DD  + I  +   A L  +   ++VG + ++ + V ++ R   +
Sbjct: 636 I----SDAGFYCDI--DDSDKTISKKVREAQLAQYNYILVVGQEEINGNTVNVRTRDNVV 689

Query: 426 REDMSLEEVIN 436
           R  +++ ++I+
Sbjct: 690 RGSLTVNDLIS 700


>gi|325261340|ref|ZP_08128078.1| proline--tRNA ligase [Clostridium sp. D5]
 gi|324032794|gb|EGB94071.1| proline--tRNA ligase [Clostridium sp. D5]
          Length = 480

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 167/406 (41%), Gaps = 72/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG  ++LP G    +N+ + + +    TG   + +P L   A L  ES   + +  E+  
Sbjct: 38  KGCLNYLPNGYAIWENIQSDLDKRFKDTGVENVYLPVLIPEALLQKESDHIEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     +R  +     PT E +  D++   ++SYR+LP  + Q    L++    RP    
Sbjct: 98  VTHGGLERLQERFCIRPTSETLFCDLWSKTVQSYRDLPKVWNQWCSVLRWEKTTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +RSREFL ++ ++   T E ++                   +++ MR        D+  +
Sbjct: 155 LRSREFLWQEGHTIHATYEEAEQ------------------RTLTMR--------DVYRD 188

Query: 210 FIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           FI             +D +  P+ S   T+ +               Y   + +H+ K  
Sbjct: 189 FI-------------QDDLAIPLLSGRKTESEKFAGAQDT-------YTVEALMHDGKAL 228

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            S   +              +FG+ +       +   + + H V   S+G+ + R++ A+
Sbjct: 229 QSATSH--------------FFGSSFPDAFDIKYADKNNELHSVYETSWGL-STRIIGAI 273

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  +AP +  +I I  H +   D   ++   L   G     DD  +  
Sbjct: 274 IMVHGDDSGLVLPPRIAPVQTRVIPIAQHKEGVLDKANELLDVLKAAGYKAKIDDSEKSP 333

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F+  ++LG P ++ +G K + +++V +  R T  +  +S++E+
Sbjct: 334 GWKFSEQEMLGIPTRIEIGPKDIENNQVVVVRRDTREKIVVSIDEI 379


>gi|332876867|ref|ZP_08444621.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685150|gb|EGJ57993.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 492

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 146/355 (41%), Gaps = 65/355 (18%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK ++    + ++ +I  PT E ++   +++ I+SYR+LP    Q     R E+R R   
Sbjct: 105 GKLIVDPEAKLEEELIVRPTSESIIWSTYKNWIQSYRDLPILINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E +     +M   Y          ++P               
Sbjct: 164 LRTAEFLWQEGHTAHATKEEAIEESERMMNVYANFVE--NFMAVP--------------- 206

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            ++     ET+ F                 D+   + ++++   A  A TS         
Sbjct: 207 -VIRGFKTETERFAGA--------------DETYCIEAMMQDGKALQAGTSH-------- 243

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                              + G  ++      +   DGK  YV   S+G+ + R++ A+I
Sbjct: 244 -------------------FLGQNFAKAFDVKYATKDGKQEYVWASSWGV-STRLMGALI 283

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +  D  G++ P ++AP ++ ++ I    A  +  R+    +   L K G  V +DD   
Sbjct: 284 MTHSDDNGLVLPPNLAPIQVVIVPIYKGAAQLESVRERISPLMEALRKQGISVKFDDRDT 343

Query: 387 QI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           Q  G +F   +L G P+++ VG + + ++  E+  R T  +E +S +++I + + 
Sbjct: 344 QSPGFKFHEYELKGVPVRLAVGQRDLENNTFEVARRDTLTKETVSGDDIIAHIAQ 398


>gi|312132188|ref|YP_003999528.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
 gi|311908734|gb|ADQ19175.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
          Length = 650

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/431 (20%), Positives = 171/431 (39%), Gaps = 63/431 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM--- 93
           KG+  WLP G    + +   ++  Q R+G + +  P + S  L+V SG +D YG++    
Sbjct: 262 KGLPLWLPKGAMLRERLENFLKRAQLRSGYLPVVTPHIGSKQLYVTSGHWDKYGEDSFQP 321

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           ++  +  ++ M+  P +     +IF+S  +SYR+LP    +    +R E      G+ R 
Sbjct: 322 IKTPEEGEEFML-KPMNCPHHCEIFKSKPRSYRDLPLRLAEFGTVYRYEQSGELHGLTRV 380

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F    +  +  + K+    L +F  LG               D S +  +
Sbjct: 381 RGFTQDDAHIF-CANDQVEDEFKKVIDLVLYVFKSLGFD-------------DYSAQVSL 426

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            +    ++   S                         E W     A  +   EK   ++ 
Sbjct: 427 RSLENRSKYIGSD------------------------EDWDKAEKAIVNAAAEKGLKTVV 462

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      + G+D + H  V +    
Sbjct: 463 EYGEAAFYGPKLDFMVKDALGRKWQLGTIQVDYNLPKRFDLEYVGSDNQKHRPVMIHRAP 522

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G+M    A++  +  G    W   ++P +I+++ I    +   D   +++  L +    
Sbjct: 523 FGSMERFIAILLENTAGNFPFW---LSPEQIAVLPI---SEKYEDFANEVFLILQENDIR 576

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            + D   E+I  +   A++   PL +IVG K   + +V ++ +  G     S++E I +A
Sbjct: 577 GYIDHRAEKISRKIRDAEVAKVPLMLIVGEKEQEEGRVSVRKKGEGDLGSFSVQEFIEFA 636

Query: 439 SHRFSNNRPVL 449
            +  + N P  
Sbjct: 637 KNEINKNIPTF 647


>gi|302024085|ref|ZP_07249296.1| threonyl-tRNA synthetase [Streptococcus suis 05HAS68]
 gi|330832440|ref|YP_004401265.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329306663|gb|AEB81079.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 649

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 173/412 (41%), Gaps = 36/412 (8%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRTLERYITDKELTSGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 314 SEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPVRIAELGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDL 206
           G+ R RE  + D + F +TPE  +  + K     + ++    L     R +   P   + 
Sbjct: 374 GLQRVREMTLNDGHIF-VTPEQIQEEFKKALQLIIDVYADFNLNDYRFRLSYRDPEDKEK 432

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            ++   + +  +  +  + D M         D+ +        E   A Y    D+   +
Sbjct: 433 YYDNDEMWENAQRMLKGAMDEM-------GVDYFE-------AEGEAAFYGPKLDI---Q 475

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           +  +L   + +S   ++    F    ++ L    T+ GADG++H   M   G I  M   
Sbjct: 476 VKTALGNEETLSTIQLD----FLLPERFGL----TYIGADGEEHRPVMIHRGVISTMERF 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++  ++ G    W   +AP ++++I I     +  D   K+   L   G  V  D+  
Sbjct: 528 TAILIETYKGAFPTW---LAPTQVTMIPISVEAHL--DYAWKVAKELQDRGVRVHVDERN 582

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           E++  +   +     P Q+IVG K + D+ V ++   +   +  S+ E +++
Sbjct: 583 EKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVRRYGSKATQTQSVAEFVDH 634


>gi|212550458|ref|YP_002308775.1| prolyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|259511574|sp|B6YQ92|SYP_AZOPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|212548696|dbj|BAG83364.1| prolyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 493

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/348 (18%), Positives = 144/348 (41%), Gaps = 65/348 (18%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + ++  I SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIIRPTSESIIWNTYKKWIHSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   + E +     K+   Y                       +   +++ +  T   +
Sbjct: 177 HTAHTSKEEAIEETLKILDIY----------------------ANFVEQYMAIPVTKGVK 214

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
             C +                              +A  +D +     ++L ++     +
Sbjct: 215 TPCER------------------------------FAGATDTY---CIETLMQD----GK 237

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F    GK  YV   S+G+ + R++ A+I    D  G++ 
Sbjct: 238 ALQAGTSHFLGQNFAKAFDVQFLNKKGKREYVWATSWGV-STRLMGALIMMHSDDNGLVL 296

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP +I +I +        D  EK   I      +  +V +D+   ++ G +FA  +
Sbjct: 297 PPKLAPCQIVIIPVSKDRTSLEDINEKATNIINDFKNLDINVKYDNTDNKKPGWKFAEYE 356

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L G P+++ +G++ + +  +E+  R T  +E +S+  + +YA++  ++
Sbjct: 357 LKGIPIRLTLGTRDLENGTIEVSRRDTLTKETISINNITDYANNLLND 404


>gi|331266854|ref|YP_004326484.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683526|emb|CBZ01144.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 647

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLNEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|153938058|ref|YP_001392415.1| threonyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|166223335|sp|A7GI05|SYT_CLOBL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|152933954|gb|ABS39452.1| threonine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320405|gb|ADG00783.1| threonine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 635

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 163/421 (38%), Gaps = 49/421 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH+   G   + P G    + + +  RE+  + G  E+  P + +  LW +SG +D Y K
Sbjct: 255 IHEEGPGFPFFHPKGMIVRNILESFWREKHTKAGYQEIRTPLILNEALWHQSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D      P +      +++S + SYR+LP    ++ +  R EL     G+M
Sbjct: 314 ENMYFTNIDDGDYAIKPMNCPGGILVYKSSMHSYRDLPLRLSELGIVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ + +T E  K     + +  +  F++L                    E+
Sbjct: 374 RVRCFTQDDAHLY-MTKEQIKEEVIGI-IKLIDEFYKL-----------------FGFEY 414

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V   T       S +  +          D I     + E   A Y    D H   L D 
Sbjct: 415 FVELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGPKIDFH---LKDC 471

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRV 324
           +        R  + G I   F    ++ L    ++ GADG+ H    V    YG    R 
Sbjct: 472 I-------GRTWQCGTIQLDFQMPERFDL----SYIGADGEKHRPVMVHRTIYG-SVERF 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +IE         +P  +AP ++ L+NI        D  +K+   L +    V  D  
Sbjct: 520 IGILIEQYAGA----FPTWLAPVQVKLMNITDSQY---DYLKKVEETLKENNIRVEIDTR 572

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +   A L   P  +I+G K V   KV ++ R  G    +SLEE I    +   N
Sbjct: 573 NEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKN 632

Query: 445 N 445
            
Sbjct: 633 K 633


>gi|326571308|gb|EGE21325.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 639

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 170/415 (40%), Gaps = 56/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +D+YG+
Sbjct: 255 MQEQAPGMVFWHPNGWTIWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGE 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   A ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTASEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F    +  + + N + ++ L ++   G   I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIFCTNAQIRQEALNFIKLT-LDVYKDFGFDHIQMKLSTRPEKRVGAD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 L D  E  +    D +D      N   D           W    A     +  K
Sbjct: 431 -----ELWDLAEQAL---ADALD------NAGLD-----------WELQ-AGEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           +  SL +          +G ++  GT    ++LP  ++A F G  G ++  V +    +G
Sbjct: 465 IEFSLQDC---------IGRVWQCGTLQLDFNLPERLNAEFVGESGERERPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   + G   ++P  +AP ++ ++NI        D+   + ++L+  G    
Sbjct: 516 SFERFIGILIEHYAG---LFPTWLAPQQVVVMNITDKQA---DSVGDVVSKLNAKGYRAI 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E+IG +     L   P  +I+G K V    V ++ R       M+L++ I
Sbjct: 570 SDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRTGDNLGSMNLDDFI 624


>gi|326562407|gb|EGE12726.1| threonyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326569116|gb|EGE19178.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 639

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 169/415 (40%), Gaps = 56/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +D+YG+
Sbjct: 255 MQEQAPGMVFWHPNGWTIWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGE 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   A ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTASEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F    +  + + N + ++ L ++   G   I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIFCTNAQIRQEALNFIKLT-LDVYKDFGFDHIQMKLSTRPEKRVGAD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 L D  E  +    D +D      N   D           W    A     +  K
Sbjct: 431 -----ELWDLAEQAL---ADALD------NAGLD-----------WELQ-AGEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           +  SL +          +G ++  GT    ++LP  + A F G  G ++  V +    +G
Sbjct: 465 IEFSLQDC---------IGRVWQCGTLQLDFNLPERLDAEFVGESGERERPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   + G   ++P  +AP ++ ++NI        D+   + ++L+  G    
Sbjct: 516 SFERFIGILIEHYAG---LFPAWLAPQQVVVMNITDKQA---DSVGDVVSKLNAKGYRAI 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E+IG +     L   P  +I+G K V    V ++ R       MSL++ I
Sbjct: 570 SDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRAGENLGSMSLDDFI 624


>gi|15678639|ref|NP_275754.1| prolyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334356|sp|O26708|SYP_METTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2621691|gb|AAB85117.1| prolyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 482

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 160/415 (38%), Gaps = 78/415 (18%)

Query: 23  HKLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-L 79
           H ++    +I Q    KG++ W+P G     N   I+R   +R    E+  P L   D L
Sbjct: 25  HNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDRDHE-EVLFPLLVPEDEL 83

Query: 80  WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     +  E+  +      +  + +   PT E VM  +F   ++S+ +LP  FYQ+
Sbjct: 84  AKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQV 143

Query: 136 QLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E +    ++R RE    K+A++   T   ++    +    Y   F+ LG+  + 
Sbjct: 144 VNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLI 203

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R                              +  FP       FD ++     ++  T 
Sbjct: 204 TR---------------------------RPPWDKFPGSEYTVAFDTLMPDGKTLQIGT- 235

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF--YFGTKYSLPMSATFKGADGKDHYV 312
                  VHN                   +G  F   F  K+  P        +G   YV
Sbjct: 236 -------VHN-------------------LGQTFARTFEIKFETP--------EGDHEYV 261

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIY 369
               YG+   RV+A+VI    D  G+  P  VA  ++ ++ I   KA ++V  +AC ++ 
Sbjct: 262 HQTCYGLSD-RVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVM-EACRELR 319

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +RL   G  V  DD   + G ++   ++ G PL+V +G + +      I  R TG
Sbjct: 320 SRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTG 374


>gi|70953193|ref|XP_745713.1| prolyl-t-RNA synthase [Plasmodium chabaudi chabaudi]
 gi|56526123|emb|CAH76923.1| prolyl-t-RNA synthase, putative [Plasmodium chabaudi chabaudi]
          Length = 498

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 24/234 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F  I  +N +     + +L+ R   I + + G+Y+ LPLG + ++ +   I     +  +
Sbjct: 12  FNRIFNDNVKQNGDKASELLFRANYIKEIN-GLYNMLPLGLRVINKIKDFINNYLEKINS 70

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN-----------------DKAMIYGPT 109
             + +  LQ   LW  S R   Y +E L +  +                  D   I  PT
Sbjct: 71  HSVFLSILQPKRLWNISDRSKLYSEEFLYVYKQKQQKVDTDIGESVKKKFEDDGNILSPT 130

Query: 110 HEE----VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
            EE    ++ +I+  +  + ++ P   +Q   KFR+E R    + +S+EFLMKD YSF  
Sbjct: 131 CEESALTLINEIYNLNA-TEKHFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGYSFHT 189

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
             +     Y      Y  IF++LGLK +I  + +   +    SHE+ +L   G+
Sbjct: 190 NEKCMNEIYEIYKECYNNIFNKLGLKYNIIKKRKKDKMNALESHEYQILCRDGK 243


>gi|288927557|ref|ZP_06421404.1| proline--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330391|gb|EFC68975.1| proline--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 493

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 143/336 (42%), Gaps = 65/336 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +I  PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 DEELIIRPTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E ++    KM   Y +                                     
Sbjct: 177 HTAHATREEAEEEAKKMLDVYAKF------------------------------------ 200

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              ++D+M  P+         +  + S  E+    +A   D +         E      +
Sbjct: 201 ---AQDWMAVPV---------VCGVKSETER----FAGALDTYT-------IEAMMQDGK 237

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G++ 
Sbjct: 238 ALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVL 296

Query: 341 PDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ +I I KA  Q+    D  + +  +L K G  V +DD    + G ++A  +
Sbjct: 297 PPKLAPIQVVVIPIGKAGQQMQAIADKLQPVIEQLRKAGVTVKYDDSDNRRPGFKYADYE 356

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           L G P+++++G + + ++ VEI  R T  +E +  E
Sbjct: 357 LKGIPVRIVMGGRDLENNTVEIMRRDTLEKETIGFE 392


>gi|322388243|ref|ZP_08061847.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140915|gb|EFX36416.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 647

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLNEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616


>gi|291515296|emb|CBK64506.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Alistipes shahii
           WAL 8301]
          Length = 604

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 160/413 (38%), Gaps = 61/413 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G    D +   +R  Q   G  ++  P + + +L+V SG Y  YGK+  + 
Sbjct: 214 QGLPLWLPKGAALRDRLEQFLRGVQKEYGYQQVITPHIGNKELYVTSGHYAKYGKDSFQP 273

Query: 97  ADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I+RS  +SY+ LP    +    +R E      G+ R R
Sbjct: 274 IHTPIEGEEYLLKPMNCPHHCEIYRSKPRSYKELPVRLAEFGTVYRYEQSGELHGLTRVR 333

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+     + ++    L IF  L   +   +              I L
Sbjct: 334 GFTQDDAHLF-VRPDQLLEEFERVIDIVLYIFKTLKFDNYTAQ--------------ISL 378

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W    +A      EK   ++ E
Sbjct: 379 RDPNNKEKYIGSD-----------------------ENWEKAESAIMQAAKEKGLTTVVE 415

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP     T+KGAD + H  + +     
Sbjct: 416 LGEAAFYGPKLDFMVKDAIGRKWQLGTIQVDYNLPERFDLTYKGADDRLHRPIMIHRAPF 475

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+M    AV+     GK  +W   ++P ++ ++ I    +   D  +K+   L++     
Sbjct: 476 GSMERFVAVLLEHTGGKFPLW---LSPQQVVVLPI---SEKFNDYAQKVSEFLNRSDVRT 529

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             DD  E+IG +    +L   P  +IVG K  ++  V ++ +  G +  MSLE
Sbjct: 530 EVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLVSVRAQGEGDKGQMSLE 582


>gi|170754255|ref|YP_001782772.1| threonyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|229557978|sp|B1IMV3|SYT_CLOBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169119467|gb|ACA43303.1| threonyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 635

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 173/437 (39%), Gaps = 52/437 (11%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH+   G   + P G    + + +  REE  + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y KE +   + +D      P +      ++++ + SY
Sbjct: 289 YQEIRTPLILNEALWHQSGHWDHY-KENMYFTNIDDGDYAIKPMNCPGGILVYKNSMHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     + +  +  
Sbjct: 348 RDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEVVGI-IKLIDK 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L                    E+ V   T       S +  +          D I  
Sbjct: 406 FYKL-----------------FGFEYFVELSTRPEDSMGSDEDWEIATNGLKEALDSIGK 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              + E   A Y    D H   L D +        R  + G I   F    ++ L    +
Sbjct: 449 EYRVNEGDGAFYGPKIDFH---LKDCI-------GRTWQCGTIQLDFQMPERFDL----S 494

Query: 302 FKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + GADG+ H    V    YG    R +  +IE         +P  +AP ++ L+NI    
Sbjct: 495 YIGADGEKHRPVMVHRTIYG-SVERFIGILIEQYAGA----FPTWLAPVQVKLMNIT--- 546

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV +
Sbjct: 547 DAQYDYLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAV 606

Query: 419 KHRLTGIREDMSLEEVI 435
           + R  G    +SLEE I
Sbjct: 607 RSRKDGDLGAISLEEFI 623


>gi|322374759|ref|ZP_08049273.1| threonine--tRNA ligase [Streptococcus sp. C300]
 gi|321280259|gb|EFX57298.1| threonine--tRNA ligase [Streptococcus sp. C300]
          Length = 647

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|309378779|emb|CBX22605.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 637

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      V   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQAVEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +       +N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARVFNELLV---RIYKQFGFHDVSVKLSLRPGKRAGSD 430

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           E    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 431 EVWDKAEQGLREALTACGVEWEE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 488

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 489 PERLNAEYVTENNDRARPVML-------------------------HRAILGSL----ER 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ ARL   G  V  D 
Sbjct: 520 FIGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAARLQAAGFRVELDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 573 RNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|228478293|ref|ZP_04062901.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228249972|gb|EEK09242.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 648

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 164/394 (41%), Gaps = 36/394 (9%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRVLERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +A +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPTMDMGDGEAFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F +TPE  K  + +     + ++    L     R         LS
Sbjct: 374 GLQRVREMSLNDGHTF-VTPEQIKDEFQRTLQLIIDVYEDFNLTDYRFR---------LS 423

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEK 266
           +      D  +T  +   D M     S      D + L+    E   A Y    D+   +
Sbjct: 424 YR-----DPKDTHKYFDNDEMWENAQSMLKSAMDDMELDYFEAEGEAAFYGPKLDI---Q 475

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           +  +L   + +S   ++    F    ++ L     + GADG++H   M   G I  M   
Sbjct: 476 VKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVISTMERF 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++  ++ G    W   +AP ++++I +   ++   D   ++  +L   G  V  D+  
Sbjct: 528 TAILIENYKGAFPTW---LAPQQVTVIPVS--NEAHTDYAWEVAKQLRDRGIRVEVDERN 582

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           E++  +   +     P Q+IVG K + D  V ++
Sbjct: 583 EKMQYKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616


>gi|331003535|ref|ZP_08327032.1| prolyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412376|gb|EGG91767.1| prolyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 479

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 1/166 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  ++     TF   D +   V   S+G+   R++ AVI    D  G+
Sbjct: 225 GKALQSGTSHYFGDGFAKAFDVTFTDKDNQIKTVFETSFGV-TTRIIGAVIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +AP ++++I + AH +   +A   +  RL   G  V  DD  +  G +FA +++ 
Sbjct: 284 KLPPHIAPVQVNIIPVAAHKEGVLEAANDLKNRLIAAGVRVKLDDSEKSPGFKFAESEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL++ +G K + +++     R TG +  +SLE V N A     N
Sbjct: 344 GIPLRIEIGPKDIENNQCVFVRRDTGEKTFVSLENVENDAKECLEN 389



 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVE 82
           ++L+  ++   S KG     P G    +N+   I      TG     +P  +  + L  E
Sbjct: 25  IVLKAELVDYTSVKGCLVIRPAGYAIWENMKNEIDRRFKETGIENCYLPMFIPESLLQKE 84

Query: 83  SGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-- 136
           +   + +  E+  +     +  ++ +   PT E +  D +   +KSYR+LP    Q    
Sbjct: 85  ADHVEGFAPEVAWVTHGGLEELEERLCVRPTSETLFCDYYSKVVKSYRDLPQLLNQWCSV 144

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +++    RP    +RSREFL ++ ++   T + +     +M   Y   F +
Sbjct: 145 VRWEKTTRP---FLRSREFLWQEGHTIHATAKEAHDRTVQMLEVYADFFEK 192


>gi|147918785|ref|YP_687490.1| prolyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121690208|sp|Q0W0C9|SYP_UNCMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110622886|emb|CAJ38164.1| prolyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 474

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 164/406 (40%), Gaps = 75/406 (18%)

Query: 37  KGIYSWLPLG---QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           KG+Y W P G   +K + N+   + +  ++     M +P     +L  ES     +  E+
Sbjct: 35  KGVYVWYPFGFSIRKKVYNMLRNLLDVDHQETYFPMLIP---KPELLKESEHIKGFEDEV 91

Query: 94  LRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             +        +  +   PT E  +  +++  I+S+ +LP   YQI   FR E +    +
Sbjct: 92  YWVTHGGLSELEVPLALRPTSETAIYPMYKLWIRSHADLPLKLYQIVNTFRYETKHTRPL 151

Query: 150 MRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           +R RE    K+A++   T + ++   ++    Y   F +L   ++P      P       
Sbjct: 152 IRLREITSFKEAHTAHATWDDAEKQVHEAMDLYSEFFTKL---AVPFIVHKRP------- 201

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                            ++  FP       FD +                          
Sbjct: 202 -----------------EWDKFPGADYTMAFDTM-------------------------- 218

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             +P+ K      ++VG + + GTK++     T++   G+  YV    YGI   R +AAV
Sbjct: 219 --MPDGK-----SLQVGTVHHLGTKFAKTYDITYEDEKGERQYVNQTCYGISE-RCIAAV 270

Query: 329 IESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           I    D KG++ P + +  ++ +I I  K  D   ++AC+K+   L         DD  E
Sbjct: 271 IGIHGDNKGLVLPPNASQTQVVIIPIIFKKDDGGVKEACQKVKELLRANDIVAVIDDADE 330

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G+++   ++ G P ++ +G + + ++ V +  R  G +E + ++
Sbjct: 331 RPGAKYYKWEMKGTPFRIEIGPRDIKNNSVMLVRR-DGKKESIPMD 375


>gi|167766936|ref|ZP_02438989.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
 gi|167710911|gb|EDS21490.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
          Length = 645

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 168/429 (39%), Gaps = 55/429 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +   G   +LP G    + +    RE   + G +E+S P + S  LW  SG +D Y 
Sbjct: 257 MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAGYVEISTPIMLSRHLWETSGHWDHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +      ++ S  +SYR+LP    ++ L  R E   +  G+
Sbjct: 316 KENMYTTVIDDQDFAIKPMNCPGGVLVYDSEPRSYRDLPLRMGELGLVHRHEKSGQLHGL 375

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F +TP+  K     +     ++++  G K                  
Sbjct: 376 MRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQVYNLFGFK------------------ 416

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
           + V   T       S +  +    S     DD + L+ +V +   A Y    D H E   
Sbjct: 417 YHVELSTRPDDSMGSDEDWELATDSLRAALDD-LGLDYVVNEGDGAFYGPKIDFHLE--- 472

Query: 269 DSLPENKRVSARGIEVGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSYGIGAM 322
           DS             +G  +  GT    + LP+     + GADG+ H  + +     G++
Sbjct: 473 DS-------------IGRTWQCGTIQLDFQLPLRFDLHYTGADGEKHRPIMIHRVAFGSI 519

Query: 323 -RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +  +IE         +P  +AP ++ +I I        D   K+   L   G     
Sbjct: 520 ERFIGILIEHFAGA----FPTWLAPVQVEVIPISDKH---LDYANKVLDTLKAAGIRADI 572

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D   E++G +   A L   P  ++VG K   +  V ++ R  G    M L++ ++     
Sbjct: 573 DTRAEKMGYKIREAQLQKIPYMLVVGGKEEENEAVSVRSRFKGDEGQMKLDDFLDAIKEE 632

Query: 442 FSN--NRPV 448
            +N  NR V
Sbjct: 633 IANRENRKV 641


>gi|307709563|ref|ZP_07646017.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619694|gb|EFN98816.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 647

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|326570601|gb|EGE20637.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 639

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 170/415 (40%), Gaps = 56/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +D+YG+
Sbjct: 255 MQEQAPGMVFWHPNGWTIWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGE 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   A ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTASEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F    +  + + N + ++ L ++   G   I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIFCTNAQIRQEALNFIKLT-LDVYKDFGFDHIQMKLSTRPEKRVGAD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 L D  E  +    D +D      N   D           W    A     +  K
Sbjct: 431 -----ELWDLAEQAL---ADALD------NAGLD-----------WELQ-AGEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           +  SL +          +G ++  GT    ++LP  ++A F G  G ++  V +    +G
Sbjct: 465 IEFSLQDC---------IGRVWQCGTLQLDFNLPERLNAEFVGESGERERPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   + G   ++P  +AP ++ ++NI        D+   + ++L+  G    
Sbjct: 516 SFERFIGILIEHYAG---LFPAWLAPQQVVVMNITDKQA---DSVGDVVSKLNAKGYRAI 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E+IG +     L   P  +I+G K V    V ++ R       M+L++ I
Sbjct: 570 SDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRTGENLGSMNLDDFI 624


>gi|293364941|ref|ZP_06611658.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703194|ref|ZP_07640140.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316391|gb|EFE56827.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623269|gb|EFO02260.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 647

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|307707001|ref|ZP_07643798.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617527|gb|EFN96697.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 647

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|294670480|ref|ZP_06735360.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307759|gb|EFE49002.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 637

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 155/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S+
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSN 430

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 431 DVWDKAEQGLREALTACGVEWDE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 488

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 489 PERLDAEYVTENNDRARPVML-------------------------HRAILGSL----ER 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D 
Sbjct: 520 FIGILIE-NHAGSFPLW---LAPAQMVIMNITENQA---DYCREVAAKLQAAGFRVELDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 573 RNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|213024072|ref|ZP_03338519.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 60

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60


>gi|116626061|ref|YP_828217.1| anticodon-binding domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229223|gb|ABJ87932.1| Anticodon-binding domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 480

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 55/193 (28%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P L+ENP DAE  S +L++R G       G+Y WLPLGQ+A+  +  I R+E
Sbjct: 7   MRWSRLFIPTLRENPADAETVSQQLLVRAGYARAVKTGVYGWLPLGQRAMAKIQRIARQE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+    L +AD                                     +I R 
Sbjct: 67  LTALGGQEVG---LDAAD-----------------------------------AAEIGRG 88

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+  ++LP  +++++             +R R+F   D Y F             M   
Sbjct: 89  EIRGAKSLPQIWFRVEAPL----------LRRRQFAGLDVYGF-------GEDAGAMREC 131

Query: 181 YLRIFHRLGLKSI 193
           + RI  R G+ ++
Sbjct: 132 FQRILDRCGVSAL 144



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 1/122 (0%)

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G Y +   R++   IE+ +D  G+  P  VAPF + +    A D    +A E+IYA  + 
Sbjct: 354 GLYRLALDRILTTAIEAGNDKDGMALPAGVAPFDVVVSVAVAGDAAQMEAAERIYAECTA 413

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G D+ +DD  E+ G +F  ADL+G P +V VG K ++   VE+  R T +   + +  V
Sbjct: 414 AGMDLLFDDRDERPGVKFKDADLIGVPWRVTVGKK-IAGGLVELVERKTKVVTAVPIASV 472

Query: 435 IN 436
           + 
Sbjct: 473 ME 474


>gi|332827078|gb|EGJ99863.1| prolyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 493

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 149/336 (44%), Gaps = 65/336 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +R+ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIVRPTSETIIWNTYRNWIQSYRDLPILVNQWANVVRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E ++    +M   Y +                                     
Sbjct: 177 HTAHATREEAEAETIQMLNVYAQF------------------------------------ 200

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              ++++M  P+         I  + S  E+    +A   D +     +++ ++     +
Sbjct: 201 ---AEEYMAMPV---------IKGVKSASER----FAGAVDTYT---IEAMMQD----GK 237

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D  G++ 
Sbjct: 238 ALQSGTSHFLGQNFAKAFDVRFADKEGKMEHVWATSWGV-STRLIGALIMAHSDDNGLVL 296

Query: 341 PDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +APF++ ++ I   D+   +  +  + +   L  +G  V +D+   ++ G +F+  +
Sbjct: 297 PPKLAPFQVVIVPIYKGDEQLALINEKVDGLVKSLKALGISVKYDNADNKKPGWKFSEYE 356

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           L G P+++ +G++ + ++ VE+  R T  +E +S +
Sbjct: 357 LKGVPVRLAMGARDMENNTVEVARRDTLTKETVSCD 392


>gi|15674621|ref|NP_268795.1| threonyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71910240|ref|YP_281790.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|22654136|sp|Q9A115|SYT_STRP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13621733|gb|AAK33516.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes M1 GAS]
 gi|71853022|gb|AAZ51045.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 647

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 169/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIQEEFQRALQLIIDVYADFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 YR-----DPNDTHKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+EE +
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRRYGSKTTHTESVEEFV 630


>gi|213961830|ref|ZP_03390096.1| prolyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213955619|gb|EEB66935.1| prolyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 492

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 144/353 (40%), Gaps = 71/353 (20%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK ++    + ++ +I  PT E ++   +++ I+SYR+LP    Q     R E+R R   
Sbjct: 105 GKLIVDPEAKLEEELIVRPTSEAIIWSTYKNWIQSYRDLPILINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKM---FVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +R+ EFL ++ ++   T   +     KM   + +++  F  +            P+   L
Sbjct: 164 LRTAEFLWQEGHTAHATKAEALEEAEKMMNVYATFVENFMAV------------PVIKGL 211

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A   ET  FC +  M                                      
Sbjct: 212 KTESERFAGADET--FCIEAMMQ------------------------------------- 232

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                        + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ 
Sbjct: 233 -----------DGKALQAGTSHFLGQNFAKAFEVKYATKEGKQEYVWASSWGV-STRLMG 280

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDD 383
           A+I +  D  G++ P  +AP ++ ++ I K  +Q+   R   + +   L K G  V +DD
Sbjct: 281 ALIMTHSDDNGLVLPPKLAPIQVVIVPIYKGEEQLEKVRTHIQPLVEELKKRGISVKFDD 340

Query: 384 MGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              Q  G +F   +L G P+++ VG + + ++  E+  R T  +E ++ ++++
Sbjct: 341 RDTQSPGFKFHEYELKGVPVRLAVGQRDIENNTFEVARRDTLTKETVTGDQIV 393


>gi|50913800|ref|YP_059772.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|68052904|sp|Q5XDC4|SYT_STRP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50902874|gb|AAT86589.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 647

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 169/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIQEEFQRALQLIIDVYADFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 YR-----DPNDTHKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+EE +
Sbjct: 576 VDDRNEKMQYKIRTSQTSKIPYQLIVGDKEMEDKSVNVRRYGSKATHTESVEEFV 630


>gi|307702092|ref|ZP_07639099.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307707425|ref|ZP_07643907.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616377|gb|EFN95568.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616579|gb|EFN95769.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 647

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|266620391|ref|ZP_06113326.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288868018|gb|EFD00317.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 633

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 178/437 (40%), Gaps = 55/437 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T  I     G   +LP G    + +    RE   R G
Sbjct: 230 YLTRIEEAKKRDHRKLGKELGLFT--IMDEGPGFPFFLPKGMVLKNALTNFWREIHEREG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P + +  LW  SG +D Y KE +     +D      P +      +++S  +SY
Sbjct: 288 YVEIATPIMLNRSLWETSGHWDHY-KENMYTTTIDDTEFAIKPMNCPGSMLVYKSQPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+MR R F   DA+ + +TPE        +      +
Sbjct: 347 RDLPLRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIY-MTPEQITDEIKGVVRLIDEV 405

Query: 185 FHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           ++  G K    +  R E   +G D         +  E      ++ +D         +D 
Sbjct: 406 YNMFGFKYHVELSTRPEDS-MGSD---------EDWEMATNSLREALD------EMGYDY 449

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--S 299
           II+     E   A Y    D H E   DSL        R  + G I      + LP+   
Sbjct: 450 IIN-----EGDGAFYGPKIDFHLE---DSL-------GRTWQCGTI---QLDFQLPLRFE 491

Query: 300 ATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A + GADG+ H  + +    +G++     ++   + GK   W   +AP ++ ++ I   +
Sbjct: 492 AEYTGADGEKHRPIMIHRVLLGSIERFIGILIEHYAGKFPAW---LAPVQVKVLPISDKN 548

Query: 359 QVCRDACEKIYARLSK--VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                  + +Y  L K  + C++  D+  E+IG +   A L   P  ++ G+K   +  V
Sbjct: 549 AAY---AKDVYNTLKKNHIRCEI--DERPEKIGYKIREAQLEKVPYMLVAGAKEEENHTV 603

Query: 417 EIKHRLTGIREDMSLEE 433
            +++R +G    MS+E+
Sbjct: 604 AVRYRDSGENVTMSVED 620


>gi|170759804|ref|YP_001788457.1| threonyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|238688792|sp|B1L0T7|SYT_CLOBM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169406793|gb|ACA55204.1| threonine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 635

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 173/437 (39%), Gaps = 52/437 (11%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH+   G   + P G    + + +  REE  + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNILESFWREEHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y KE +   + +D      P +      ++++ + SY
Sbjct: 289 YQEIRTPLILNEALWHQSGHWDHY-KENMYFTNIDDGDYAIKPMNCPGGILVYKNSMHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     + +  +  
Sbjct: 348 RDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEIVGI-IKLIDK 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L                    E+ V   T       S +  +          D I  
Sbjct: 406 FYKL-----------------FGFEYFVELSTRPEDSMGSDEDWEIATNGLREALDSIGK 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              + E   A Y    D H   L D +        R  + G I   F    ++ L    +
Sbjct: 449 EYRVNEGDGAFYGPKIDFH---LKDCI-------GRTWQCGTIQLDFQMPERFDL----S 494

Query: 302 FKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + GADG+ H    V    YG    R +  +IE         +P  +AP ++ L+NI    
Sbjct: 495 YIGADGEKHRPVMVHRTIYG-SVERFIGILIEQYAGA----FPTWLAPVQVKLMNIT--- 546

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV +
Sbjct: 547 DAQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKIPYMLILGDKEVEAGKVAV 606

Query: 419 KHRLTGIREDMSLEEVI 435
           + R  G    +SLEE I
Sbjct: 607 RSRKDGDLGAISLEEFI 623


>gi|94989937|ref|YP_598037.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|123258050|sp|Q1JI30|SYT_STRPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94543445|gb|ABF33493.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 647

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 169/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIQEEFQRALQLIIDVYADFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 YR-----DPNDTHKYYDNDEM-----WENAQSMLKAALDEMDVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+EE +
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRRYGSKATHTESVEEFV 630


>gi|187776940|ref|ZP_02993413.1| hypothetical protein CLOSPO_00484 [Clostridium sporogenes ATCC
           15579]
 gi|187775599|gb|EDU39401.1| hypothetical protein CLOSPO_00484 [Clostridium sporogenes ATCC
           15579]
          Length = 635

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 173/437 (39%), Gaps = 52/437 (11%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH+   G   + P G    + + +  REE  + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y KE +   + +D      P +      ++++ + SY
Sbjct: 289 YQEIRTPLILNEALWHQSGHWDHY-KENMYFTNIDDGDYAIKPMNCPGGILVYKNSMHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     + +  +  
Sbjct: 348 RDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEVVGI-IKLIDK 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L                    E+ V   T       S +  +          D I  
Sbjct: 406 FYKL-----------------FGFEYFVELSTRPEDSMGSDEDWEIATNGLREALDSIGK 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              + E   A Y    D H   L D +        R  + G I   F    ++ L    +
Sbjct: 449 EYRVNEGDGAFYGPKIDFH---LKDCI-------GRTWQCGTIQLDFQMPERFDL----S 494

Query: 302 FKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + GADG+ H    V    YG    R +  +IE         +P  +AP ++ L+NI    
Sbjct: 495 YIGADGEKHRPVMVHRTIYG-SVERFIGILIEQYAGA----FPTWLAPVQVKLMNITDSQ 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV +
Sbjct: 550 Y---DYLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAV 606

Query: 419 KHRLTGIREDMSLEEVI 435
           + R  G    +SLEE I
Sbjct: 607 RSRKDGDLGAISLEEFI 623


>gi|172058202|ref|YP_001814662.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|171990723|gb|ACB61645.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 646

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 178/412 (43%), Gaps = 37/412 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I +++   G   +  P L S +L+  SG +D Y  +M   
Sbjct: 265 QGLPMWLPKGAAIRRTVERYIVDKELELGYEHVYTPVLGSVELYKTSGHWDHYQDDMFPK 324

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I+++  +SYR+LP    ++    R E+     G+ R R  
Sbjct: 325 MEMDNEELVLRPMNCPHHMMIYKNEPRSYRDLPLRVAELGGMHRYEMSGALTGLQRVRYM 384

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
           ++ D ++F + P+  K  +  +      ++   G+     R +   P   +   +   + 
Sbjct: 385 VLNDGHTF-VRPDQMKEEFKAIVHLIQEVYADFGITDYKFRLSYRDPADKEKYFDNDAIW 443

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  + ++  + D ++ P       F+         E   A Y    DV   ++  +L ++
Sbjct: 444 EMAQRELKETMDELELPY------FE--------AEGEAAFYGPKLDV---QVRTALGKD 486

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+KG DG+DH   +   G+ +   R VA +IE  
Sbjct: 487 ETLSTVQLD----FLLPERFEL----TYKGNDGQDHRPVVLHRGVVSTMERFVAYLIEEY 538

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ LI + +   V  D   +I   L K G  V  D   E++G + 
Sbjct: 539 ---KG-AFPTWLAPVQVKLIPVSS---VHEDYAREIKTMLLKKGIRVETDFRDEKLGYRI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             A +   P+ +++G K +   +V I+   +    + SLE+ ++      +N
Sbjct: 592 REAQVNKVPVMLVLGDKEIEAREVNIRRYGSKDSSNASLEQFVSDLEQEIAN 643


>gi|296113663|ref|YP_003627601.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921357|gb|ADG61708.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 639

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 169/415 (40%), Gaps = 56/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +D+YG+
Sbjct: 255 MQEQAPGMVFWHPNGWTIWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGE 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   A ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTASEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F    +  + + N + ++ L ++   G   I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIFCTNAQIRQEALNFIKLT-LDVYKDFGFDHIQMKLSTRPEKRVGAD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 L D  E  +    D +D      N   D           W    A     +  K
Sbjct: 431 -----ELWDLAEQAL---ADALD------NAGLD-----------WELQ-AGEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           +  SL +          +G ++  GT    ++LP  + A F G  G ++  V +    +G
Sbjct: 465 IEFSLQDC---------IGRVWQCGTLQLDFNLPERLDAEFVGESGERERPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   + G   ++P  +AP ++ ++NI        D+   + ++L+  G    
Sbjct: 516 SFERFIGILIEHYAG---LFPAWLAPQQVVVMNITDKQA---DSVGDVVSKLNAKGYRAI 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E+IG +     L   P  +I+G K V    V ++ R       M+L++ I
Sbjct: 570 SDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRTGENLGSMNLDDFI 624


>gi|256820371|ref|YP_003141650.1| prolyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581954|gb|ACU93089.1| prolyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 492

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 152/359 (42%), Gaps = 65/359 (18%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK M+    + ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   
Sbjct: 105 GKLMVDPEAKLEEELIVRPTSEAIIWNTYKNWIQSYRDLPILINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T   +     KM   Y                           +
Sbjct: 164 LRTAEFLWQEGHTAHATKAEAIEEAQKMMNVYA--------------------------D 197

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+             ++FM  P+         I  + S  E+    +A   D +     +
Sbjct: 198 FV-------------ENFMAVPV---------IKGVKSESER----FAGADDTY---CIE 228

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           +L ++     + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ A+I
Sbjct: 229 ALMQD----GKALQAGTSHFLGQNFAKAFDVKYVSKEGKQEYVWASSWGV-STRLMGALI 283

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDMGE 386
            +  D  G++ P  +AP ++ ++ I K  +Q+   R   + +   L K    V +DD   
Sbjct: 284 MTHSDDNGLVLPPKLAPIQVVIVPIYKGAEQLEKVRSHIQPLIEELKKHNISVKFDDRDT 343

Query: 387 QI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           Q  G +F   +L G P+++ VG + +  +  E+  R T  +E ++ ++++ +      N
Sbjct: 344 QSPGFKFHEYELKGIPVRLAVGQRDIEHNTFEVARRDTLTKETVAGDQIVAHIQQLLEN 402


>gi|71903081|ref|YP_279884.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|123734122|sp|Q48US7|SYT_STRPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71802176|gb|AAX71529.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 647

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 170/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIQEEFQRALQLIIDVYADFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T+ +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 YR-----DPNDTRKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+EE +
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRRYGSKATHTESVEEFV 630


>gi|326563502|gb|EGE13765.1| threonyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326573810|gb|EGE23767.1| threonyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 639

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 169/415 (40%), Gaps = 56/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +D+YG+
Sbjct: 255 MQEQAPGMVFWHPNGWTIWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGE 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   A ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTASEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F    +  + + N + ++ L ++   G   I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIFCTNAQIRQEALNFIKLT-LDVYKDFGFDHIQMKLSTRPEKRVGAD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 L D  E  +    D +D      N   D           W    A     +  K
Sbjct: 431 -----ELWDLAEQAL---ADALD------NAGLD-----------WELQ-AGEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           +  SL +          +G ++  GT    ++LP  + A F G  G ++  V +    +G
Sbjct: 465 IEFSLQDC---------IGRVWQCGTLQLDFNLPERLDAEFVGESGERERPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   + G   ++P  +AP ++ ++NI        D+   + ++L+  G    
Sbjct: 516 SFERFIGILIEHYAG---LFPAWLAPQQVVVMNITDKQA---DSVGDVVSKLNAKGYRAI 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E+IG +     L   P  +I+G K V    V ++ R       M+L++ I
Sbjct: 570 SDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRTGENLGSMNLDDFI 624


>gi|240013609|ref|ZP_04720522.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240112403|ref|ZP_04726893.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240120679|ref|ZP_04733641.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
          Length = 648

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 442 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 501

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R V
Sbjct: 502 RLDAEYVTENNDRARPVML-------------------------HRAILGSLE----RFV 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 533 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 585

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 586 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|19745635|ref|NP_606771.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|94988057|ref|YP_596158.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94991943|ref|YP_600042.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|139474254|ref|YP_001128970.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|306827837|ref|ZP_07461106.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|25453286|sp|Q8P234|SYT_STRP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123080426|sp|Q1JMY5|SYT_STRPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123382336|sp|Q1JD10|SYT_STRPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225506|sp|A2RFY5|SYT_STRPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19747765|gb|AAL97270.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes
           MGAS8232]
 gi|94541565|gb|ABF31614.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94545451|gb|ABF35498.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|134272501|emb|CAM30764.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|304429946|gb|EFM32986.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 647

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 169/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIQEEFQRALQLIIDVYADFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 YR-----DPNDTHKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+EE +
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRRYGSKATHTESVEEFV 630


>gi|307705352|ref|ZP_07642214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307621139|gb|EFO00214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 647

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYGDFNLNEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|157150881|ref|YP_001450077.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189083628|sp|A8AWB7|SYT_STRGC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157075675|gb|ABV10358.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 647

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEIAAGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|268681605|ref|ZP_06148467.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268621889|gb|EEZ54289.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 637

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 430

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 431 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 488

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 489 PERLDAEYVTENNDRARPVML-------------------------HRAILGSL----ER 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            V  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 520 FVGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 573 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 610


>gi|254493203|ref|ZP_05106374.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268598466|ref|ZP_06132633.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|226512243|gb|EEH61588.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268582597|gb|EEZ47273.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
          Length = 637

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 430

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 431 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 488

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 489 PERLDAEYVTENNDRARPVML-------------------------HRAILGSL----ER 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            V  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 520 FVGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 573 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 610


>gi|262282640|ref|ZP_06060408.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261931|gb|EEY80629.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 647

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEIAAGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|313158764|gb|EFR58151.1| proline--tRNA ligase [Alistipes sp. HGB5]
          Length = 494

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 147/346 (42%), Gaps = 79/346 (22%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIVRPTSETIIWNTYKNWIQSYRDLPILCNQWANVVRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     KM    + ++ R                                 
Sbjct: 177 HTAHATREEAVEEAEKM----IHVYQRF-------------------------------- 200

Query: 221 VFCSKDFMDFPI----PSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              ++++M  P+     S N  F   +D +++ ++++                       
Sbjct: 201 ---AEEWMSLPVVVGHKSPNERFAGAEDTLTIEALMQ----------------------- 234

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ A+I +  
Sbjct: 235 ----DGKALQSGTSHFLGQNFAKAFDVQYVNKEGKLEYVWATSWGV-STRLMGALIMAHS 289

Query: 334 DGKGIIWPDSVAPFKISLINI-KAHDQVC--RDACEKIYARLSKVGCDVFWDDMGE-QIG 389
           D  G++ P  +AP ++ +I I K  DQ+   R   E I A+L   G  V  DD    + G
Sbjct: 290 DNNGLVLPPKLAPIQVVMIPIYKGDDQLAEIRTRFEAIAAQLKAKGISVKIDDRDNVRSG 349

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA  +L G P+++ +G + + +  +E+  R T  ++ +S E ++
Sbjct: 350 FKFAEYELKGVPVRLAMGPRDMENGTIELVRRDTLEKQTVSQEGLV 395


>gi|319946565|ref|ZP_08020800.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319747311|gb|EFV99569.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 647

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYGDFNLNEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|240122983|ref|ZP_04735939.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 648

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 442 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 499

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 500 PERLDAEYVTENNDRARPVML-------------------------HRAILGSL----ER 530

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            V  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 531 FVGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDL 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 584 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|194098020|ref|YP_002001068.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|193933310|gb|ACF29134.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
          Length = 648

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 442 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 501

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R V
Sbjct: 502 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFV 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 533 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 585

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 586 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|327470637|gb|EGF16093.1| threonine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 645

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V DS V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDSTVNVR 616


>gi|187921760|ref|YP_001890792.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|187720198|gb|ACD21421.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 404

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 158/400 (39%), Gaps = 48/400 (12%)

Query: 31  MIHQHSKGI--YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           + HQ  +G+    W P G +    +   +R    R G  E+  P L +  LW +SG ++ 
Sbjct: 15  LFHQQEEGVGMVFWHPRGWELYRVLEVYVRARMRRAGFREIRTPQLLARSLWEKSGHWEK 74

Query: 89  YGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +G  M  LAD  + +A+   P        +F   ++SYR LP  + +     RDE     
Sbjct: 75  FGAAMYSLADAEEGRALCLKPMSCPCHVQVFNQRVRSYRELPVRYSEFGACHRDEPSGSL 134

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGD 205
            G+ R+R F+  DA+ F    E         F + LR ++  LG     +   + P    
Sbjct: 135 EGLKRTRAFVQDDAHVF--CTEAQIEVEVGRFCALLRTVYADLGFPRFKVALATRPA--- 189

Query: 206 LSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      G+ Q +  ++D +     +   +F+       ++E   A Y    + H 
Sbjct: 190 --------MRAGDDQTWDRAEDALANAARAAGLEFE-------VLEGEGAFYGPKLEFH- 233

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA-DGKDHYVQMGSYGIGA 321
             L DS        AR  + G I      + LP  + A F    + ++  V +    +G+
Sbjct: 234 --LLDS-------RARSWQCGTI---QLDFVLPERLDAEFVNERNERERPVMIHHAVLGS 281

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M    A++   H+G   +W   +AP ++ +  I    +  R   +++   L   G     
Sbjct: 282 MERFIAMLLEHHEGWLPVW---LAPEQVVVATIS---ETNRAYAQEVMQALDDAGVRAVL 335

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E++  +   A     PL V+VGS+   D  + I+ R
Sbjct: 336 DSRPERLEKKIVDAREKQVPLLVVVGSRDERDQTISIRLR 375


>gi|317129892|ref|YP_004096174.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315474840|gb|ADU31443.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 645

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/452 (20%), Positives = 187/452 (41%), Gaps = 53/452 (11%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK-----GIYS-----------WLPLGQKALDNVNAIIR 58
           P+  ++  H  ML       H K     GI++           WLP G      +   I 
Sbjct: 226 PKQQQLEDHLKMLEEAKERDHRKLGKELGIFTINQKVGQGLPLWLPKGATIRRTIERYIV 285

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + + R G   +  P L S +L+  SG +D Y ++M    + +++ ++  P +      I+
Sbjct: 286 DLEERLGYDHVYTPVLGSVELYKTSGHWDHYHEDMFPTMEMDNEDLVLRPMNCPHHMMIY 345

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYRNLP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++
Sbjct: 346 KNQLHSYRNLPVRIAELGTMHRHEMSGALAGLQRVRAMTLNDAHIF-CRPDQLKDEFIRV 404

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G+     R         LS+      D  + + +   D M     +   
Sbjct: 405 VELVQNVYQDFGIDDYYFR---------LSYR-----DPEDKEKYVDNDEMWEKAQAMLK 450

Query: 238 DFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           +  + ++++ +  E   A Y    DV   ++  +L +++ +S   ++    F+   ++ L
Sbjct: 451 EAMEDMNVDYVEAEGEAAFYGPKLDV---QVKTALGKDETLSTVQLD----FHLPNRFEL 503

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                + G DGK+H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I +
Sbjct: 504 ----AYVGEDGKEHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVEVIPV 555

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +V  D   ++  +L + G  V  D   E++G +   A +   P  +++G K +  S
Sbjct: 556 S---EVHMDYVRRVEDKLKQAGVRVHVDVRDEKLGYKIREAQMQKIPYILVLGDKEIEAS 612

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V ++       E + L+E ++       N +
Sbjct: 613 TVNVRKYGQKDSEAVGLDEFVSSMKEEIQNRK 644


>gi|255535772|ref|YP_003096143.1| prolyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341968|gb|ACU08081.1| Prolyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 491

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 147/348 (42%), Gaps = 79/348 (22%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ ++SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSEAIIWNTYKNWVQSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T + +     KM                           D+  +F          
Sbjct: 174 HTAHATRDEALEETEKML--------------------------DVYADF---------- 197

Query: 221 VFCSKDFMDFP----IPSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              +++FM  P    I +E+  F   D+   + ++++   A  A TS             
Sbjct: 198 ---TENFMAIPVIRGIKTESERFAGADETYCIEALMQDGKALQAGTS------------- 241

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                          + G  +       F   +GK  +    S+G  + R+V A+I +  
Sbjct: 242 --------------HFLGQNFGKAFDVKFTNREGKIEHAWGTSWGT-STRLVGALIMTHS 286

Query: 334 DGKGIIWPDSVAPFKISLINI-KAHDQVCR-DACE-KIYARLSKVGCDVFWDDMGE-QIG 389
           D  G++ P S+AP ++ ++ I K  +Q+ + DA    + A+L   G  V +D+  E + G
Sbjct: 287 DDLGLVLPPSLAPIQVVIVPIFKGEEQLSQIDAVAYDLQAKLKAKGISVKYDNRTENKPG 346

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +FA  +L G P+++ +G++ + +  VEI  R    +E   LE + NY
Sbjct: 347 WKFAEYELKGVPIRIAMGARDLENKTVEIARRDNLTKETQPLEGIENY 394


>gi|329118120|ref|ZP_08246832.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465780|gb|EGF12053.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 640

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 153/397 (38%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+E +  G  E+  P +     W  SG +D+Y  
Sbjct: 261 LQEEAPGMVFWHPRGWALWQAIEQHMRKELDAAGYREVKTPQIMDKTFWERSGHWDNYKD 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 321 NMF-VTQSEKREYAVKPMNCPGHVQIFNNSLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 379

Query: 151 RSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F+  DA+ F   D   E ++  +N++ V   RI+ + G   + ++    P     S
Sbjct: 380 RVRGFVQDDAHIFCTEDQIVEEARR-FNELLV---RIYKQFGFHDVAVKLSLRPEKRAGS 435

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHN 264
            +    A+ G      +       +P E   +   I     ++I   W         V  
Sbjct: 436 DDIWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDAIGRSWQCGTLQLDFV-- 493

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 LPE  R+ A  +                      ++G+   V +    +G++  
Sbjct: 494 ------LPE--RLDAEYV--------------------TESNGRARPVMLHRAILGSLER 525

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++  +H G   +W   +AP ++ ++NI  H     D C K+  +L   G  V  D  
Sbjct: 526 FIGILIENHAGSFPLW---LAPVQMVVMNITEHQA---DYCRKVVEKLRAEGFRVELDLR 579

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +        FP Q++VG K   + +V ++ +
Sbjct: 580 NEKIGYKIRDNSQYRFPYQIVVGDKEKENGQVAVRRK 616


>gi|326562776|gb|EGE13071.1| threonyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326563180|gb|EGE13448.1| threonyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 639

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 168/415 (40%), Gaps = 56/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG +D+YG+
Sbjct: 255 MQEQAPGMVFWHPNGWTIWQVLEQYMRKVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGE 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   A ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 MMFTTASEKRDYAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F    +    + N + ++ L ++   G   I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIFCTNAQIRSEALNFIKLT-LDVYKDFGFDHIQMKLSTRPEKRVGAD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 L D  E  +    D +D      N   D           W    A     +  K
Sbjct: 431 -----ELWDLAEQAL---ADALD------NAGLD-----------WELQ-AGEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           +  SL +          +G ++  GT    ++LP  + A F G  G ++  V +    +G
Sbjct: 465 IEFSLQDC---------IGRVWQCGTLQLDFNLPERLDAEFVGESGERERPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   + G   ++P  +AP ++ ++NI        D+   + ++L+  G    
Sbjct: 516 SFERFIGILIEHYAG---LFPAWLAPQQVVVMNITDKQA---DSVGDVVSKLNAKGYRAI 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E+IG +     L   P  +I+G K V    V ++ R       M+L++ I
Sbjct: 570 SDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRTGDNLGSMNLDDFI 624


>gi|330508032|ref|YP_004384460.1| prolyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928840|gb|AEB68642.1| prolyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 487

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 169/460 (36%), Gaps = 112/460 (24%)

Query: 23  HKLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIRE---------------EQNRTG 65
           H+L++   +I      KG+  W P G     NV  IIR+                +N   
Sbjct: 32  HELLMTGEIIDNRYPVKGMCVWFPFGFAIKKNVYGIIRQLLDPDHQETLFPLMIPENEFM 91

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                +   +    WV  G         ++LA R        PT E  +  +F+  I+S+
Sbjct: 92  KEAQHIKGFEEEVYWVTCGGTTPLE---VKLALR--------PTSETAIYPMFKLWIRSH 140

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            ++P   YQI   FR E +    ++R RE    K+A++   T E +          Y   
Sbjct: 141 ADMPLRIYQIVNTFRYETKHTRPLIRLREITSFKEAHTVHATWEEAAEQVEVAIKRYSEF 200

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + RL   +IP      P                         +  FP     T  D I  
Sbjct: 201 YRRL---AIPFLVSRRP------------------------SWDKFPGADYTTAIDVI-- 231

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                     +P+ K      ++VG   + G+ ++     T++ 
Sbjct: 232 --------------------------MPDGK-----TLQVGTAHHLGSTFAKTYEITYEA 260

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-----Q 359
            DG+   V    YGI + R +AA+I    D KG+  P  VAP ++ ++ I   D     +
Sbjct: 261 EDGEQKLVNQTCYGI-SERCIAALISVHGDDKGLALPWEVAPVQVVIVPILLGDKEKVLE 319

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           VCRD    +   L + G  V  D   E+ G++F   ++ G P+++ VG + +    V + 
Sbjct: 320 VCRD----LLRILQQAGIRVELDTSDERPGAKFYKWEMKGVPIRLEVGPRDIEKGVVTVV 375

Query: 420 HR----LTGIREDMS---------LEEVINYASHRFSNNR 446
            R    LT  RE ++         L+  +   +  F+N+R
Sbjct: 376 RRDAEKLTLPREGLAQALVREAERLQAALYQRAEAFANSR 415


>gi|94993836|ref|YP_601934.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|123080137|sp|Q1J7X1|SYT_STRPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94547344|gb|ABF37390.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 647

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 169/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIQEEFRRALQLIIDVYADFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 YR-----DPNDTHKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+EE +
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRRYGSKATHTESVEEFV 630


>gi|119476522|ref|ZP_01616873.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119450386|gb|EAW31621.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 645

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 158/418 (37%), Gaps = 68/418 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      + + +RE+Q      E+  P L    LW +SG  D +G 
Sbjct: 255 MQEEAPGMVFWHPKGWSIYTTIESYMREQQTLNNYQEIKTPQLVDFSLWQKSGHADKFGD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +M  L AD  D A+   P +      IF   +KSYR+LP    +     R+E      G+
Sbjct: 315 DMFTLEADGRDFAI--KPMNCPCHVQIFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSH 208
           MR R F+  DA+ F    E        +F+ +L  ++   G   +  R  + P       
Sbjct: 373 MRVRGFVQDDAHIF--ATENQIQPEVSVFIDFLHSVYEDFGFSDVIYRLSTRP------- 423

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK-- 266
                    E +V               TD           E W     A +D  N K  
Sbjct: 424 ---------EQRV--------------GTD-----------ESWDKAEKALADALNSKGL 449

Query: 267 LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQM 314
            ++ LP         IE      +G ++  GT    +S+P  + A +   DG +   V +
Sbjct: 450 PWEELPGEGAFYGPKIEFSLKDCIGRVWQLGTIQVDFSMPGRLDAQYVAEDGSRQTPVML 509

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G+      ++   ++G    W   +AP ++ + NI           +K++  L  
Sbjct: 510 HRAILGSFERFIGILIEHYEGAFPTW---LAPTQVVIANITDKQA---PYVKKVHQSLKN 563

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G  V  D   E+IG +     +   P  ++VG K + +  V ++ R       MSLE
Sbjct: 564 SGIRVDADLRNEKIGFKIREHIIQKVPYLLVVGDKEIENQTVAVRARNGEDLGSMSLE 621


>gi|88602429|ref|YP_502607.1| prolyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|114152211|sp|Q2FLY5|SYP_METHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88187891|gb|ABD40888.1| prolyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 478

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/420 (20%), Positives = 164/420 (39%), Gaps = 69/420 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+Y W P G      V  I+RE  +R     +    +   +   E+     +  E+  +
Sbjct: 35  KGLYVWFPFGFGIRKRVYGILRELLDRDHEETLFPLLIPEPEFMKEAEHIKGFENEVYWV 94

Query: 97  ADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   D  +   PT E  +  ++   ++S+ +LP   YQI   FR E +    ++R 
Sbjct: 95  THGGTTPLDIKLALRPTSETAIYPMYALWVRSHADLPIKVYQIVNTFRYETKHTRPLIRL 154

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE    K+A++   T E ++         Y   + RL   +IP+     P          
Sbjct: 155 REITSFKEAHTVHATWEDAERQVEDAIARYREFYDRL---NIPVLISKRP---------- 201

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                         D+  FP        D  I++++I                      +
Sbjct: 202 --------------DWDKFP------GADYTIAVDTI----------------------M 219

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+      R +++G + + G  +S   S  ++   G+  Y     YGI   R +AA+I  
Sbjct: 220 PD-----GRTLQIGTVHHLGDHFSKTFSIQYEDTKGQQQYCHQTCYGISE-RSIAALISM 273

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D +G++ P  VAP +I ++ +  K  ++    A E +   L   G  V  D    + G
Sbjct: 274 HGDDRGLMLPPEVAPVQIVIVPVIMKKREEEIMQAAELLEKELQNAGYRVKIDTRDLRPG 333

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++   ++ G PL++ +G + + D+ V +    +G +E +   ++I   + + +    +L
Sbjct: 334 AKYYYWEMRGVPLRLEIGPRDL-DNGVVMGVLRSGGKESLPRADIIAEVNRKMTEFTAIL 392


>gi|59800743|ref|YP_207455.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|73919809|sp|Q5F9U4|SYT_NEIG1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|59717638|gb|AAW89043.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 637

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 430

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 431 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 488

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 489 PERLDAEYVTENNDRARPVML-------------------------HRAILGSL----ER 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 520 FIGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 573 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 610


>gi|322385772|ref|ZP_08059416.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321270510|gb|EFX53426.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 649

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 168/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D+  E++  +   +     P Q+IVG K + D  V ++       + +S++E +
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRYGQKETQTVSVDEFV 632


>gi|77408338|ref|ZP_00785079.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77173019|gb|EAO76147.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 647

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 166/404 (41%), Gaps = 37/404 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++  +G   +  P + S + +  SG +D Y ++M   
Sbjct: 259 QGLPFWLPNGATIRRELERYIVDKEIASGYQHVYTPPMASVEFYKTSGHWDHYREDMFPT 318

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +     ++++ H+ SYR LP    ++ +  R E      G+ R RE
Sbjct: 319 MDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAELGMMHRYEKSGALTGLQRVRE 378

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVL 213
             + DA+ F +TPE  K  + K       I+    L     R +   P   +  H++   
Sbjct: 379 MTLNDAHIF-VTPEQIKDEFLKALNLIAEIYEDFNLTDYRFRLSYRDP---EDKHKYYDN 434

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLP 272
            +  E      K+ MD        DF     L+    E   A Y    D+   ++  +L 
Sbjct: 435 DEMWENAQAMLKEAMD--------DF----GLDYFEAEGEAAFYGPKLDI---QVKTALG 479

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIES 331
             + +S   ++    F    ++ L     + GADG++H  + +   GI  M    A++  
Sbjct: 480 NEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPIMIHRGGISTMERFTAILIE 531

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP ++S+I I     +  D   ++   L   G     DD  E++  +
Sbjct: 532 TYKGAFPTW---LAPQQVSVIPISNEAHI--DYAWEVARALKDRGIRAEVDDRNEKMQYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A     P Q+IVG K + +  V ++   +   E  S+EE +
Sbjct: 587 IRAAQTQKIPYQLIVGDKEMEEKAVNVRRYGSKATETKSIEEFV 630


>gi|268683833|ref|ZP_06150695.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|268624117|gb|EEZ56517.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 637

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 430

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 431 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 488

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 489 PERLDAEYVTENNDRARPVML-------------------------HRAILGSL----ER 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            V  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 520 FVGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 573 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 610


>gi|239998484|ref|ZP_04718408.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240125235|ref|ZP_04738121.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|317163762|gb|ADV07303.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 648

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 442 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 499

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 500 PERLDAEYVTENNDRARPVML-------------------------HRAILGSLE----R 530

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            V  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 531 FVGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDL 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 584 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|167746735|ref|ZP_02418862.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
 gi|167653695|gb|EDR97824.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
          Length = 644

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 167/415 (40%), Gaps = 55/415 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+     G   +LP G    + +    RE  N+ G +E+S P + S  LW  SG +D Y 
Sbjct: 253 MMRDEGPGFPFFLPNGMVLKNTLLDYWREIHNKAGYVEISSPIMLSRHLWETSGHWDHYQ 312

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   + D  D A+   P +      +++S  +SYR+LP    ++ L  R E   +  G
Sbjct: 313 ENMYTTVIDEEDFAI--KPMNCPGGVLVYQSEPRSYRDLPLRMGELGLVHRHEKSGQLHG 370

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           +MR R F   DA+ F + PE  K     +     +++   G K                 
Sbjct: 371 LMRVRCFTQDDAHIF-MMPEQIKDEIKGVAALIDQVYSLFGFKY---------------- 413

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKL 267
             + L+   E  +   +D+ +    S  +  DD + L+ +V +   A Y    D H E  
Sbjct: 414 -HVELSTRPEDSMGSDEDW-EMATDSLRSALDD-LGLDYVVNEGDGAFYGPKIDFHLE-- 468

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSYGIGA 321
            DS             +G  +  GT    + LP+     + GADG+ H  + +     G+
Sbjct: 469 -DS-------------IGRTWQCGTIQLDFQLPLRFDLHYTGADGEKHRPIMIHRVAFGS 514

Query: 322 M-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R +  +IE         +P  +AP ++ +I I        D   K+   L   G    
Sbjct: 515 IERFIGILIEHFAGA----FPTWLAPVQVKVIPISDKH---LDYGTKVLDALKAAGIRAE 567

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E++G +   A L   P  ++VG K   +  V ++ R  G    MSL++ I
Sbjct: 568 IDTRAEKMGYKIREAQLHKIPYMLVVGGKEEENQAVSVRSRFKGDEGQMSLDDFI 622


>gi|268596339|ref|ZP_06130506.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268550127|gb|EEZ45146.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 638

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 256 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 316 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 375 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 431

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 432 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYRVKDALGRSWQCGTLQLDFVLPE 491

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 492 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 522

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 523 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 575

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 576 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 611


>gi|268594343|ref|ZP_06128510.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547732|gb|EEZ43150.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 638

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 256 LQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 316 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 375 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 431

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 432 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 489

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 490 PERLDAEYVTENNDRARPVML-------------------------HRAILGSL----ER 520

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            V  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 521 FVGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 574 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 611


>gi|269213639|ref|ZP_05982445.2| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269145722|gb|EEZ72140.1| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 643

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 261 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 321 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 379

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 380 RVRGFVQDDAHIFCTEDQIVDEARAFNELLV---RIYKQFGFHDVAVKLSLRPEQRAGSD 436

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           E    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 437 EVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 496

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L       K   AR + +                         H   +GS      R +
Sbjct: 497 RLNAEYVTEKNDRARPVML-------------------------HRAILGSL----ERFI 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 528 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 580

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 581 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 616


>gi|317499591|ref|ZP_07957854.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893140|gb|EFV15359.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 641

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 167/429 (38%), Gaps = 55/429 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +   G   +LP G    + +    RE   + G +E+S P + S  LW  SG +D Y 
Sbjct: 253 MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAGYVEISTPIMLSRHLWETSGHWDHY- 311

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +      ++ S  +SYR+LP    ++ L  R E   +  G+
Sbjct: 312 KENMYTTVIDDQDFAIKPMNCPGGVLVYDSEPRSYRDLPLRMGELGLVHRHEKSGQLHGL 371

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F +TP+  K     +     ++++  G K                  
Sbjct: 372 MRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQVYNLFGFK------------------ 412

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
           + V   T       S +  +    S     DD + L+ +V +   A Y    D H E   
Sbjct: 413 YHVELSTRPDDSMGSDEDWELATDSLRAALDD-LGLDYVVNEGDGAFYGPKIDFHLE--- 468

Query: 269 DSLPENKRVSARGIEVGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSYGIGAM 322
           DS             +G  +  GT    + LP+     + GADG+ H  + +     G++
Sbjct: 469 DS-------------IGRTWQCGTIQLDFQLPLRFDLHYTGADGEKHRPIMIHRVAFGSI 515

Query: 323 -RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +  +IE         +P  +AP ++ +I I        D   K+   L   G     
Sbjct: 516 ERFIGILIEHFAGA----FPTWLAPVQVEVIPISDKH---LDYANKVLDTLKAAGIRADI 568

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D   E++G +   A L   P  ++VG K   +  V ++ R  G    M L++ +      
Sbjct: 569 DTRAEKMGYKIREAQLQKIPYMLVVGGKEEENEAVSVRSRFKGDEGQMKLDDFLAAIKEE 628

Query: 442 FSN--NRPV 448
            +N  NR V
Sbjct: 629 IANRENRKV 637


>gi|71984184|ref|NP_001022033.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis
           elegans]
 gi|1711653|sp|P52709|SYTC_CAEEL RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3875006|emb|CAA93762.1| C. elegans protein C47D12.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 725

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 173/420 (41%), Gaps = 61/420 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             HQ S G   W P G    + +   IR++  R G  E+  P + +  LW  SG +  Y 
Sbjct: 333 FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYS 392

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++M ++    ++  +  P +      +F     +Y  LPF F    +  R+E+     G+
Sbjct: 393 EDMFKIEVEKEEFGL-KPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGL 451

Query: 150 MRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIG 203
            R R F   DA+ F   D   E  K   + +  +Y ++F    +L L + P     G +G
Sbjct: 452 TRVRRFQQDDAHIFCRQDQISEEIKQCLDFLEYAYEKVFGFTFKLNLSTRP----EGFLG 507

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYA 257
                  I   D  E                     D   +LN+   +W       A Y 
Sbjct: 508 N------IETWDKAEA--------------------DLTNALNASGRKWVLNPGDGAFYG 541

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              D+    + D+L  N + +   ++    F    ++ L   + F     K   V +   
Sbjct: 542 PKIDI---TIQDALKRNFQCATIQLD----FQLPNQFDL---SYFDEKGEKQRPVMIHRA 591

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++  + A++  S+ GK   WP  ++P +  +I +  H+ V RD    +  ++ + G 
Sbjct: 592 VLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV--HESV-RDYANDVKKQIFEAGF 645

Query: 378 DV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++ + ++ G+ +  Q   A L  F   +++G+K   +  V ++ R   +R +++L+++I+
Sbjct: 646 EIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLIS 705


>gi|240080190|ref|ZP_04724733.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 648

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 442 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYRVKDALGRSWQCGTLQLDFVLPE 501

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 502 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 533 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 585

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 586 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|291559712|emb|CBL38512.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SSC/2]
          Length = 641

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 167/429 (38%), Gaps = 55/429 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +   G   +LP G    + +    RE   + G +E+S P + S  LW  SG +D Y 
Sbjct: 253 MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAGYVEISTPIMLSRHLWETSGHWDHY- 311

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +      ++ S  +SYR+LP    ++ L  R E   +  G+
Sbjct: 312 KENMYTTVIDDQDFAIKPMNCPGGVLVYDSEPRSYRDLPLRMGELGLVHRHEKSGQLHGL 371

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F +TP+  K     +     ++++  G K                  
Sbjct: 372 MRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQVYNLFGFK------------------ 412

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
           + V   T       S +  +    S     DD + L+ +V +   A Y    D H E   
Sbjct: 413 YHVELSTRPDDSMGSDEDWELATDSLRAALDD-LGLDYVVNEGDGAFYGPKIDFHLE--- 468

Query: 269 DSLPENKRVSARGIEVGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSYGIGAM 322
           DS             +G  +  GT    + LP+     + GADG+ H  + +     G++
Sbjct: 469 DS-------------IGRTWQCGTIQLDFQLPLRFDLHYTGADGEKHRPIMIHRVAFGSI 515

Query: 323 -RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +  +IE         +P  +AP ++ +I I        D   K+   L   G     
Sbjct: 516 ERFIGILIEHFAGA----FPTWLAPVQVEVIPISDKH---LDYANKVLDTLKAAGIRADI 568

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D   E++G +   A L   P  ++VG K   +  V ++ R  G    M L++ +      
Sbjct: 569 DTRAEKMGYKIREAQLQKIPYMLVVGGKEEENGAVSVRSRFKGDEGQMKLDDFLAAIKEE 628

Query: 442 FSN--NRPV 448
            +N  NR V
Sbjct: 629 IANRENRKV 637


>gi|261367962|ref|ZP_05980845.1| proline--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282569944|gb|EFB75479.1| proline--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 479

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 156/407 (38%), Gaps = 71/407 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG     P G    +N+   +      TG   +++P L    L  + G   + +  E+  
Sbjct: 39  KGFVVLRPYGYAIWENIQKNLDARFKATGHENVAMPMLMPESLLKKEGELVNGFAPEVAW 98

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    ++  ++ +   PT E +  D F   + SYR+LP  + Q    +++    RP    
Sbjct: 99  VTMGGSEPLEERLAVRPTSETLFCDHFSHVLHSYRDLPMLYNQWCSVVRWEKSTRP---F 155

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+REF  ++ ++   T E +K    +    Y                            
Sbjct: 156 LRTREFWWQEGHTIHETAEEAKAETEQQLNCY---------------------------- 187

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               AD      FC  D     I    TD +             A Y   + + + K   
Sbjct: 188 ----AD------FCENDLCIPVIKGRKTDKEKFAGAE-------ATYTIEAMMKDGKALQ 230

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S              G   YFG K+S     TF G D    Y    S+G  + R++ A+I
Sbjct: 231 S--------------GTSHYFGDKFSRAYDVTFTGRDNTLQYPFQTSWGASS-RLIGAII 275

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D  G+I P ++AP ++ ++ + AH     +   ++ A + K    V  DD  +Q G
Sbjct: 276 MTHGDDDGLILPPAIAPVQVVIVPVAAHKPGVLEKSRELAAEIGKYA-RVKLDDSDKQPG 334

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +FA  ++ G P+++ VG + +   +  +  R T  ++ +  E++ +
Sbjct: 335 WKFAQWEMKGVPIRLEVGPRDIEQGQCVLVRRDTREKQFVKFEDLAS 381


>gi|82753710|ref|XP_727786.1| prolyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483805|gb|EAA19351.1| prolyl-tRNA synthetase-related [Plasmodium yoelii yoelii]
          Length = 583

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 25/238 (10%)

Query: 4   SKY-FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +KY F  I  +N +     + +L+ R   I + + G+Y+ LPLG + ++ +   I     
Sbjct: 119 TKYIFNKIFNDNIKQNGDKASELLFRANYIKEIN-GLYNMLPLGMRVINKIKDFINNYLE 177

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN-----------------DKAMI 105
           +  +  + +  LQ   LW  S R   Y +E L +  +                  D   I
Sbjct: 178 KINSHSVFLSILQPKRLWNISDRSKLYSEEFLYVYKQKQQKVDTDLGEIIKKKYEDDGNI 237

Query: 106 YGPTHEEV----MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
             PT EE+    + +++  +  + +N P   +Q   KFR+E R    + +S+EFLMKD Y
Sbjct: 238 LSPTCEEIALTLINEVYNLN-ATEKNFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGY 296

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGE 218
           SF    +     Y      Y  IF++LGL    ++         L SHE+ +L   G+
Sbjct: 297 SFHANKKCMDEIYEIYKECYKNIFNKLGLTYRIIKKRKKDKMNALESHEYQILCRDGK 354



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 35/170 (20%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E  HIF  G  YS  ++  +     +   + MGSYGIG  R++  +I++ +D  GI  P+
Sbjct: 357 EGAHIFKLGDYYSKKLNINYLNKKNEKKNIYMGSYGIGINRLLYFLIDNFYDENGIKLPN 416

Query: 343 SVAPFKISLINIKAHDQVCRDACEKI---------------------------------Y 369
            +APF I LI      +   +   KI                                 Y
Sbjct: 417 QIAPFSIYLIQTNQKSKYSSEKVNKIVNELRKEIINDNNTTLYNSLNSNDIEYILTIWLY 476

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             L +   D ++D+    +  +    DL+G   +VI+  K  SD K +IK
Sbjct: 477 TILKENDIDTYYDNTDLHLSRKLKNCDLIGASNRVIINLK--SDEKKKIK 524


>gi|323333769|gb|EGA75160.1| YER087W-like protein [Saccharomyces cerevisiae AWRI796]
          Length = 294

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGI 319
           D    ++     E +    + IEVGHIF  G KYS P++  F   + K+  +V MG YGI
Sbjct: 196 DAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGI 255

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           G  R+V A+ E   D  G  WP  +AP+K+S+ 
Sbjct: 256 GVSRLVGAIAELGRDSNGFRWPAIMAPYKVSIC 288



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+SG IGG+ S EF ++ ++
Sbjct: 1   MKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADSGDIGGEFSKEFHLIHES 60

Query: 217 GETQVFCSK 225
           GE  +   K
Sbjct: 61  GEDTLMSCK 69


>gi|315652419|ref|ZP_07905407.1| proline--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485318|gb|EFU75712.1| proline--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 479

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 1/166 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  ++   + TF   D +   V   S+G+   R++ AVI    D  G+
Sbjct: 225 GKALQSGTSHYFGDGFAKAFNVTFTDKDNQVKPVFETSFGM-TTRIIGAVIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +AP ++++I + AH +   DA   +Y RL   G  V  D+  +  G +FA +++ 
Sbjct: 284 KLPPHIAPVQVNIIPVAAHKEGVLDAANTLYDRLKVAGLRVKLDNSEKSPGFKFAESEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL++ +G K + +++     R TG +  +SL+ V   A     N
Sbjct: 344 GIPLRIEIGPKDIENNQCVFVRRDTGEKSFVSLDNVEGDAKDCLEN 389



 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 11/171 (6%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVE 82
           ++L+  ++   S KG     P G    +N+   I      TG     +P  +  + L  E
Sbjct: 25  IVLKAELVDYTSVKGCLVIRPAGYAIWENMKNEIDRRFKETGIENCYLPMFIPESLLQKE 84

Query: 83  SGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-- 136
           +   + +  E+  +     ++ D+ +   PT E +  D +   +KSYR+LP    Q    
Sbjct: 85  ADHVEGFAPEVAWVTYGGMEKLDERLCVRPTSETLFCDYYAGAVKSYRDLPQLLNQWCSV 144

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +++    RP    +RSREFL ++ ++   T + +     +M   Y   F +
Sbjct: 145 VRWEKTTRP---FLRSREFLWQEGHTVHATAKEAHDRTVQMLDVYADFFEK 192


>gi|325197939|gb|ADY93395.1| threonyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 637

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|332201058|gb|EGJ15129.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 647

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 159/399 (39%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GAD +DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADSEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616


>gi|218249438|ref|YP_002374917.1| prolyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226321716|ref|ZP_03797242.1| prolyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|259511576|sp|B7J1X2|SYP_BORBZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218164626|gb|ACK74687.1| prolyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226232905|gb|EEH31658.1| prolyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 488

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 173/428 (40%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D C+ +   L K G  V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYCDCVVDALKKAGFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|323345462|ref|ZP_08085685.1| proline--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323093576|gb|EFZ36154.1| proline--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 493

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 97/201 (48%), Gaps = 10/201 (4%)

Query: 249 VEQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            EQW A P         E+   +L     E      + ++ G   + G  ++     T+ 
Sbjct: 201 AEQWMAVPVLQGVKSETERFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTYL 260

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQV 360
             + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I       Q 
Sbjct: 261 NKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPIQVVIIPITKGIEQLQA 319

Query: 361 CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  I A L ++G +V +DD   ++ G +FA  +L G P+++++G + + D+ +E+ 
Sbjct: 320 ISAKLSPIIASLRELGINVKYDDTDNKRPGFKFADYELKGVPVRLVMGGRDLEDNTIEVM 379

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R T  +E +SL+ +++Y  H
Sbjct: 380 RRDTLEKETVSLDGIVDYVKH 400



 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R D+ +I  PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL +
Sbjct: 116 RLDEELIIRPTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQ 174

Query: 159 DAYS 162
           + ++
Sbjct: 175 EGHT 178


>gi|270293200|ref|ZP_06199411.1| threonine--tRNA ligase [Streptococcus sp. M143]
 gi|270279179|gb|EFA25025.1| threonine--tRNA ligase [Streptococcus sp. M143]
          Length = 647

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEIAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|168183457|ref|ZP_02618121.1| threonine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796594|ref|YP_002864146.1| threonyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259516348|sp|C3KTK0|SYT_CLOB6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|182673322|gb|EDT85283.1| threonine--tRNA ligase [Clostridium botulinum Bf]
 gi|229263282|gb|ACQ54315.1| threonine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 635

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 160/411 (38%), Gaps = 49/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH+   G   + P G    + +    REE  + G  E+  P + +  LW +SG +D Y K
Sbjct: 255 IHEEGPGFPFFHPKGMIIRNILENFWREEHTKAGYQEIRTPLILNEALWHQSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D      P +      ++++ + SYR+LP    ++ +  R EL     G+M
Sbjct: 314 ENMYFTNIDDGDYAIKPMNCPGGILVYKNSMHSYRDLPLRLSELGIVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ + +T E  K     + +  +  F++L                    E+
Sbjct: 374 RVRCFTQDDAHLY-MTKEQIKEEIVGI-IKLIDKFYKL-----------------FGFEY 414

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V   T       S +  +          D I     + E   A Y    D H   L D 
Sbjct: 415 FVELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGPKIDFH---LKDC 471

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRV 324
           +        R  + G I   F    ++ L    ++ GADG+ H    V    YG    R 
Sbjct: 472 I-------GRTWQCGTIQLDFQMPERFDL----SYIGADGEKHRPVMVHRTIYG-SVERF 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +IE         +P  +AP ++ L+NI        D  +K+   L +    V  D  
Sbjct: 520 IGILIEQYAGA----FPTWLAPVQVKLMNIT---DAQYDYLKKVEEALKENNIRVEIDTR 572

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +   A L   P  +I+G K V   KV ++ R  G    +SLEE I
Sbjct: 573 NEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFI 623


>gi|323490461|ref|ZP_08095668.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323395865|gb|EGA88704.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 642

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 176/406 (43%), Gaps = 40/406 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P + S +L+  SG +D Y ++M  +
Sbjct: 264 QGLPMWLPKGATIRRIIERYIVDKEERLGYDHVYTPVMGSVELYKTSGHWDHYQEDMFPV 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      IF+  I SYR +P    ++ L  R E+     G+ R R  
Sbjct: 324 MKMDNEELVLRPMNCPHHMMIFKQGIHSYRQMPVRIAELGLMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    + ++    +     R         LS+      D
Sbjct: 384 TLNDAHLF-VRPDQIKEEFKRVVNLIVEVYKDFNINDYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             + + +   D M     +   +  D + ++ I VE   A Y    DV   ++  +L + 
Sbjct: 429 PEDKEKYFDDDAMWNRAQAMLKEAMDELDVDYIEVEGEAAFYGPKVDV---QVKTALGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    ++ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----SYIGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY 537

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ LI  ++ AH    ++  EK+ +   K+  D+  D+  E++G 
Sbjct: 538 ---KG-AFPTWLAPVQVELIPVSLDAHSAYTKELQEKLQSH--KIRVDI--DERDEKLGY 589

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +   A +   P  +++G K + D  V ++       E M  E+ + 
Sbjct: 590 KIREAQMQKVPYMLVLGDKELEDGSVNVRKYGEQKSESMPFEDFVK 635


>gi|149373221|ref|ZP_01892041.1| prolyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149354255|gb|EDM42826.1| prolyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 492

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/355 (19%), Positives = 155/355 (43%), Gaps = 65/355 (18%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           ++ GK ++    + ++ +I  PT E ++   ++  ++SYR+LP    Q     R E+R R
Sbjct: 102 ENAGKLIVDPNAKLEEELIVRPTSEAIIWSTYKGWVQSYRDLPLLINQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R+ EFL ++ ++   T + +     +M   Y                         
Sbjct: 162 L-FLRTAEFLWQEGHTAHTTKKEAIEESERMMNVYA------------------------ 196

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+             +DFM  P+         +  L +  E+    +A   + +   
Sbjct: 197 --DFV-------------QDFMAIPV---------VKGLKTESER----FAGAEETY--- 225

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             ++L ++     + ++ G   + G  ++      F   +GK  YV   S+G+ + R++ 
Sbjct: 226 CIEALMQD----GKALQAGTSHFLGQNFAKAFDVKFATKEGKQEYVWGTSWGV-STRLMG 280

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDD 383
           A++ +  D KG++ P ++AP ++ ++ I  +D+      +A  ++ A L   G  V +D+
Sbjct: 281 ALVMTHSDDKGLVLPPNLAPDQVVIVPIYRNDEQFDAVSEAANELMAALRAKGVRVKFDN 340

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               + G +F   +L G P+++ +G K + +   E+  R T  +E +S + ++++
Sbjct: 341 RDTHKPGWKFNEYELKGVPVRIAIGPKDLENGTFEVARRDTLTKEVLSKDVIVDH 395


>gi|260441039|ref|ZP_05794855.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|268600819|ref|ZP_06134986.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268584950|gb|EEZ49626.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
          Length = 637

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R V
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFV 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 610


>gi|240117427|ref|ZP_04731489.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 648

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 442 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 499

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 500 PERLDAEYVTENNDRARPVML-------------------------HRAILGSLE----R 530

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            V  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 531 FVGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDL 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 584 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|268603124|ref|ZP_06137291.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268587255|gb|EEZ51931.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 637

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R V
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFV 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 610


>gi|300727040|ref|ZP_07060459.1| proline--tRNA ligase [Prevotella bryantii B14]
 gi|299775584|gb|EFI72175.1| proline--tRNA ligase [Prevotella bryantii B14]
          Length = 493

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 154/339 (45%), Gaps = 65/339 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIIRPTSETIIWNTYKNWIHSWRDLPIKCNQWCNVMRWEMRTR-PFLRTSEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T                             R E+  +  D+ H   V AD  E  
Sbjct: 177 HTAHAT-----------------------------REEAEKMAQDMLH---VYADFAEK- 203

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                 +M  P+         I  + S  E+    +A   D +     +++ ++     +
Sbjct: 204 ------YMAVPV---------IQGVKSETER----FAGALDTYT---IEAMMQD----GK 237

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++     T+   + K  YV   S+G+ + R++ A+I +  D  G++ 
Sbjct: 238 ALQSGTSHFLGQNFAKSFDVTYLTKENKPEYVWATSWGV-STRLMGALIMTHSDDNGLVL 296

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ +I I  +D+      +K   +  +L+++G  V +DD   ++ G ++A  +
Sbjct: 297 PPKLAPVQVVIIPIYKNDEQHEQLNQKLQPVIDQLTELGVSVKYDDADNKRPGFKYADYE 356

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L G P+++++G + + ++ +E+  R T  +E+++ + ++
Sbjct: 357 LKGVPVRLVMGGRDLENNTIEVMRRDTLEKENVTFDGIV 395


>gi|22536875|ref|NP_687726.1| threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76787804|ref|YP_329459.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76799413|ref|ZP_00781564.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77405954|ref|ZP_00783034.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77413516|ref|ZP_00789706.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|73919828|sp|Q8E0L9|SYT_STRA5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771973|sp|Q3K1Z4|SYT_STRA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22533725|gb|AAM99598.1|AE014224_1 threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76562861|gb|ABA45445.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76585236|gb|EAO61843.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77160460|gb|EAO71581.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77175465|gb|EAO78254.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 647

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 166/404 (41%), Gaps = 37/404 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++  +G   +  P + S + +  SG +D Y ++M   
Sbjct: 259 QGLPFWLPNGATIRRELERYIVDKEIASGYQHVYTPPMASVEFYKTSGHWDHYREDMFPT 318

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +     ++++ H+ SYR LP    ++ +  R E      G+ R RE
Sbjct: 319 MDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAELGMMHRYEKSGALTGLQRVRE 378

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVL 213
             + DA+ F +TPE  K  + K       I+    L     R +   P   +  H++   
Sbjct: 379 MTLNDAHIF-VTPEQIKDEFLKALNLIAEIYEDFNLTDYRFRLSYRDP---EDKHKYYDN 434

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLP 272
            +  E      K+ MD        DF     L+    E   A Y    D+   ++  +L 
Sbjct: 435 DEMWENAQAMLKEAMD--------DF----GLDYFEAEGEAAFYGPKLDI---QVKTALG 479

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIES 331
             + +S   ++    F    ++ L     + GADG++H  + +   GI  M    A++  
Sbjct: 480 NEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPIMIHRGGISTMERFTAILIE 531

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP ++S+I I     +  D   ++   L   G     DD  E++  +
Sbjct: 532 TYKGAFPTW---LAPQQVSVIPISNEAHI--DYAWEVARVLKDRGIRAEVDDRNEKMQYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A     P Q+IVG K + +  V ++   +   E  S+EE +
Sbjct: 587 IRAAQTQKIPYQLIVGDKEMEEKAVNVRRYGSKATETKSIEEFV 630


>gi|25010739|ref|NP_735134.1| threonyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77410759|ref|ZP_00787117.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|73919827|sp|Q8E693|SYT_STRA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23095093|emb|CAD46328.1| theronyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77163138|gb|EAO74091.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 647

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 166/404 (41%), Gaps = 37/404 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++  +G   +  P + S + +  SG +D Y ++M   
Sbjct: 259 QGLPFWLPNGATIRRELERYIVDKEIASGYQHVYTPPMASVEFYKTSGHWDHYREDMFPT 318

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +     ++++ H+ SYR LP    ++ +  R E      G+ R RE
Sbjct: 319 MDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAELGMMHRYEKSGALTGLQRVRE 378

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVL 213
             + DA+ F +TPE  K  + K       I+    L     R +   P   +  H++   
Sbjct: 379 MTLNDAHIF-VTPEQIKDEFLKALNLIAEIYEDFNLTDYRFRLSYRDP---EDKHKYYDN 434

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLP 272
            +  E      K+ MD        DF     L+    E   A Y    D+   ++  +L 
Sbjct: 435 DEMWENAQAMLKEAMD--------DF----GLDYFEAEGEAAFYGPKLDI---QVKTALG 479

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIES 331
             + +S   ++    F    ++ L     + GADG++H  + +   GI  M    A++  
Sbjct: 480 NEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPIMIHRGGISTMERFTAILIE 531

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP ++S+I I     +  D   ++   L   G     DD  E++  +
Sbjct: 532 TYKGAFPTW---LAPQQVSVIPISNEAHI--DYAWEVARVLKDRGIRAEVDDRNEKMQYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A     P Q+IVG K + +  V ++   +   E  S+EE +
Sbjct: 587 IRAAQTQKIPYQLIVGDKEMEEKAVNVRRYGSKATETKSIEEFV 630


>gi|240115143|ref|ZP_04729205.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|291044371|ref|ZP_06570080.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291011265|gb|EFE03261.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 648

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 442 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 501

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R V
Sbjct: 502 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFV 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 533 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 585

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 586 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|293399557|ref|ZP_06643710.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291610126|gb|EFF39248.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 648

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 442 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 501

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 502 RLDAEYVTENNDRARPVML-------------------------HRAILGSLE----RFI 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 533 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 585

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 586 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|149182849|ref|ZP_01861310.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849464|gb|EDL63653.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 643

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 168/404 (41%), Gaps = 36/404 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ + G   +  P + S DL+  SG +D Y + M  +
Sbjct: 264 QGLPMWLPKGATIRRIIERYIVDKEEKLGYDHVYTPVMGSVDLYKTSGHWDHYQENMFPV 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            D +++ ++  P +      I+++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MDMDNEQLVLRPMNCPHHMMIYKNSIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    L     R         LS+      D
Sbjct: 384 TLNDAHLF-VRPDQIKEEFKRVVRLVLEVYKDFDLNDYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M         +  D + ++    E   A Y    DV   ++  +L + 
Sbjct: 429 PQDTEKYFDDDEMWNKAQQMLKEAMDEMEIDYFEAEGEAAFYGPKLDV---QVKTALGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYIGEDGKHHRPVVIHRGVVSTMERFVAFLIEEY 537

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +     V  D  +K+   L   G  V  D   E+IG + 
Sbjct: 538 ---KG-AFPTWLAPVQVQVIPVSP--DVHFDYAKKVQEELQAQGLRVELDSRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             A +   P  ++VG   + +  V ++       E +SL + + 
Sbjct: 592 REAQMSKIPYMLVVGDNEIQEEAVNVRKYGEQKSETVSLSDFVQ 635


>gi|322377382|ref|ZP_08051873.1| threonine--tRNA ligase [Streptococcus sp. M334]
 gi|321281582|gb|EFX58591.1| threonine--tRNA ligase [Streptococcus sp. M334]
          Length = 647

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  + + +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPEDKEKYFDNDQM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|154495989|ref|ZP_02034685.1| hypothetical protein BACCAP_00272 [Bacteroides capillosus ATCC
           29799]
 gi|150274872|gb|EDN01928.1| hypothetical protein BACCAP_00272 [Bacteroides capillosus ATCC
           29799]
          Length = 586

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 175/435 (40%), Gaps = 45/435 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T M      G   +LP G    + +    R+   + G
Sbjct: 181 YLQRIEEAKKRDHRKLGKELGLFTLM--DEGPGFPFFLPNGMVLRNTLIDYWRQIHKKYG 238

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            +E+S P + +  LW  SG +D Y   M   + D  D A+   P +      ++++   S
Sbjct: 239 YVEISTPMMLNRQLWERSGHWDHYKNNMYTTVIDGEDFAI--KPMNCPGGMLVYKTEPHS 296

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R EL     G+ R R F   DA+ F +T E  K    +    +  
Sbjct: 297 YRDLPLRVGELGLVHRHELSGALHGLFRVRCFTQDDAHVF-MTREQMKDVIQETVRLFDE 355

Query: 184 IFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++   GL  +I +          +  + I   +  E     ++D +   I     +F   
Sbjct: 356 VYSTFGLNYTIELST--------MPEDHIGTVEEWER----NQDILKNAITDMGKEF--- 400

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D H   L DSL        R  + G I    ++        +
Sbjct: 401 ----VINEGDGAFYGPKLDFH---LADSL-------GRTWQCGTI-QLDSQLPERFELEY 445

Query: 303 KGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H  V +    +G++     VI     G    W   ++P ++S++ I   D+  
Sbjct: 446 TGADGEKHRPVMIHRVVLGSIERFIGVITEHFAGAFPAW---LSPVQVSILPIT--DRTA 500

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           + A E + A L K G  V  D   E+IG +   A L   P  +++G K    + V +++R
Sbjct: 501 QYADE-VKALLEKAGFRVEVDHRNEKIGKKIREAQLKKVPYMLVLGDKEAEGATVAVRNR 559

Query: 422 LTGIREDMSLEEVIN 436
             G +  MSL+E IN
Sbjct: 560 AGGDQGAMSLDEFIN 574


>gi|71984192|ref|NP_001022034.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis
           elegans]
 gi|30145813|emb|CAD89723.1| C. elegans protein C47D12.6b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 684

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 173/420 (41%), Gaps = 61/420 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             HQ S G   W P G    + +   IR++  R G  E+  P + +  LW  SG +  Y 
Sbjct: 292 FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYS 351

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++M ++    ++  +  P +      +F     +Y  LPF F    +  R+E+     G+
Sbjct: 352 EDMFKIEVEKEEFGL-KPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGL 410

Query: 150 MRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIG 203
            R R F   DA+ F   D   E  K   + +  +Y ++F    +L L + P     G +G
Sbjct: 411 TRVRRFQQDDAHIFCRQDQISEEIKQCLDFLEYAYEKVFGFTFKLNLSTRP----EGFLG 466

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYA 257
                  I   D  E                     D   +LN+   +W       A Y 
Sbjct: 467 N------IETWDKAEA--------------------DLTNALNASGRKWVLNPGDGAFYG 500

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              D+    + D+L  N + +   ++    F    ++ L   + F     K   V +   
Sbjct: 501 PKIDI---TIQDALKRNFQCATIQLD----FQLPNQFDL---SYFDEKGEKQRPVMIHRA 550

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++  + A++  S+ GK   WP  ++P +  +I +  H+ V RD    +  ++ + G 
Sbjct: 551 VLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV--HESV-RDYANDVKKQIFEAGF 604

Query: 378 DV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++ + ++ G+ +  Q   A L  F   +++G+K   +  V ++ R   +R +++L+++I+
Sbjct: 605 EIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLIS 664


>gi|160934880|ref|ZP_02082266.1| hypothetical protein CLOLEP_03755 [Clostridium leptum DSM 753]
 gi|156866333|gb|EDO59705.1| hypothetical protein CLOLEP_03755 [Clostridium leptum DSM 753]
          Length = 478

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 155/398 (38%), Gaps = 71/398 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+  I+  E    G   +++P  +  + L  E    + +  E+  +    ++
Sbjct: 45  PYGWAIWENIRDILDHEFKELGHENVAMPLFIPESLLQKEKDHVEGFAPEVAWVTHGGEE 104

Query: 103 AM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFL 156
            +       PT E +  D +++ I S+R+LP  + Q    +++    RP    +RS EF 
Sbjct: 105 ELPERLCVRPTSETLFCDHYKNIIHSWRDLPKLYNQWCSVVRWEKTTRP---FLRSVEFY 161

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++ ++   T + +     +M   Y                                AD 
Sbjct: 162 WQEGHTMHATAQEAMEETERMLNVY--------------------------------AD- 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                FC K      +    T  +             A Y   + +H+ K   S      
Sbjct: 189 -----FCEKQLAIPVVKGRKTKKEQFAGAE-------ATYTIEALMHDGKALQS------ 230

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                   G   YFG  ++     T+   + K  Y    S+G+ + R++  +I +  D  
Sbjct: 231 --------GTSHYFGDGFARAFEITYTDKENKPQYPHQTSWGM-STRIIGGIIMTHGDDN 281

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P +VAP ++ +I I  H     +  E++ ARL K+ C V  DD  +  G +F+  +
Sbjct: 282 GLVLPPAVAPIQVMIIPIAQHKPGVLEKAEELRARLKKI-CRVRMDDSEQSPGWKFSQYE 340

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 341 MKGVPLRLEIGPKDIEKNQCVLVRRDNREKTFVSLDEL 378


>gi|319744717|gb|EFV97060.1| threonine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 647

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 166/404 (41%), Gaps = 37/404 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++  +G   +  P + S + +  SG +D Y ++M   
Sbjct: 259 QGLPFWLPNGATIRRELERYIVDKEIASGYQHVYTPPMASVEFYKTSGHWDHYREDMFPT 318

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +     ++++ H+ SYR LP    ++ +  R E      G+ R RE
Sbjct: 319 MDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAELGMMHRYEKSGALTGLQRVRE 378

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVL 213
             + DA+ F +TPE  K  + K       I+    L     R +   P   +  H++   
Sbjct: 379 MTLNDAHIF-VTPEQIKDEFLKALNLIAEIYEDFNLTDYRFRLSYRDP---EDKHKYYDN 434

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLP 272
            +  E      K+ MD        DF     L+    E   A Y    D+   ++  +L 
Sbjct: 435 DEMWENAQAMLKEAMD--------DF----GLDYFEAEGEAAFYGPKLDI---QVKTALG 479

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIES 331
             + +S   ++    F    ++ L     + GADG++H  + +   GI  M    A++  
Sbjct: 480 NEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPIMIHRGGISTMERFTAILIE 531

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP ++S+I I     +  D   ++   L   G     DD  E++  +
Sbjct: 532 TYKGAFPTW---LAPQQVSVIPISNEAHI--DYAWEVARVLKDRGIRAEVDDRNEKMQYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A     P Q+IVG K + +  V ++   +   E  S+EE +
Sbjct: 587 IRAAQTQKIPYQLIVGDKEMEEKGVNVRRYGSKATETKSIEEFV 630


>gi|226324523|ref|ZP_03800041.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
 gi|225206971|gb|EEG89325.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
          Length = 643

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 164/413 (39%), Gaps = 51/413 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +   G   +LP G +  + +    RE   + G +E+S P + S  LW  SG +D Y 
Sbjct: 253 MMREEGPGFPFFLPKGMELKNQLLDYWREIHKKAGYVEISTPIMLSRHLWETSGHWDHY- 311

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           K+ +     +D+     P +      ++ S  +SYR+LP    ++ L  R E   +  G+
Sbjct: 312 KDNMYTTVIDDEDFAIKPMNCPGGILVYESEPRSYRDLPLRMGELGLVHRHEKSGQLHGL 371

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F +TPE  +     +      ++   G K                  
Sbjct: 372 MRVRCFTQDDAHIF-MTPEQVRDEIKGVVKLINEVYSLFGFKY----------------- 413

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            + L+   E  +   +D+ D    +     DD+     + E   A Y    D H E   D
Sbjct: 414 HVELSTRPEDSMGSDEDW-DMATEALRGALDDLGLPYVVNEGDGAFYGPKIDFHLE---D 469

Query: 270 SLPENKRVSARGIEVGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSYGIGAM- 322
           S             +G  +  GT    + LP+  +  + GADG+ H  + +     G++ 
Sbjct: 470 S-------------IGRTWQCGTIQLDFQLPLRFNLEYTGADGEKHRPIMIHRVIFGSIE 516

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R +  +IE         +P  +AP ++ ++ I        D  +K+   L+  G     D
Sbjct: 517 RFIGILIEHFAGA----FPTWLAPVQVKVLPISDK---YMDYAQKVLDELNNSGVRAEID 569

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              E+IG +   A +   P  ++VG+K   D  V I+ R  G     SL + +
Sbjct: 570 TRAEKIGYKIREAQMKKIPYMLVVGAKEEEDGLVSIRSRFEGDEGQKSLTDFL 622


>gi|73981327|ref|XP_860843.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 6
           [Canis familiaris]
          Length = 701

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 173/419 (41%), Gaps = 59/419 (14%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E  R G  E+  PT
Sbjct: 296 EAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRRGFSEVKTPT 355

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L SA LW  SG ++ Y ++M  L    D  +   P +      +F    +S+R LP    
Sbjct: 356 LFSAKLWELSGHWEHYQEDMFVLHHSTD-TLALKPMNCPAHCLMFAHRPRSWRELPLRLA 414

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS------YNKMFVSYLRIFH 186
              +  R E      G+ R R F   DA+ F   P+  +        + +   + L    
Sbjct: 415 DFGVLHRAEASGSLGGLTRLRCFQQDDAHIF-CAPDQLEEEIQGCLDFLRSVYAVLGFSF 473

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           RL L + P    SG +G         L D  E QV   +   +F  P +    D      
Sbjct: 474 RLALSTRP----SGFLGES------CLWDQAE-QVL-QRALEEFGEPWDLKPGDG----- 516

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKG 304
                  A Y    DVH   L D+L        R  + G I      + LP+     +KG
Sbjct: 517 -------AFYGPKIDVH---LHDAL-------GRPHQCGTI---QLDFQLPLRFDLQYKG 556

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCR 362
             G  +  V +    +G++  +  V+  S+ GK   WP  ++PF++ +I + A  ++  R
Sbjct: 557 QAGVLERPVLIHRAVLGSVERMLGVLAESYGGK---WPLWLSPFQVVVIPVGAEQEEYAR 613

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +A +++ A  + + CD+   D G  +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 614 EAQQRLQA--AGLVCDLD-ADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSKKTVNIRTR 669


>gi|299535482|ref|ZP_07048804.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
 gi|298729243|gb|EFI69796.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
          Length = 643

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 189/437 (43%), Gaps = 38/437 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFTTS-QKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYRNLP    ++    R E+     G+ R R   + DA+ F + P+  K  + K+    L
Sbjct: 351 SYRNLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIF-VRPDQIKAEFQKVVQLIL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    L     R         LS+      D  +T+ +   D M     S   +  D 
Sbjct: 410 EVYKDFDLHDYSFR---------LSYR-----DPADTEKYFDDDAMWEKAQSMLKEAMDE 455

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + L+    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 456 LGLDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 504

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DGK H   +   G+ +   R VA +IE   + KG  +P  +AP ++ +I +   ++
Sbjct: 505 YVGEDGKPHRPVVIHRGVVSTMERFVAFLIE---EYKG-AFPTWLAPVQVEVIPVS--NE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V  + V ++
Sbjct: 559 AHFDYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEANGVNVR 618

Query: 420 HRLTGIREDMSLEEVIN 436
              +   E +S E+ ++
Sbjct: 619 RYGSKDSETISFEDFLS 635


>gi|324991486|gb|EGC23419.1| threonine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 647

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|317471544|ref|ZP_07930893.1| threonyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900979|gb|EFV22944.1| threonyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 539

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 167/412 (40%), Gaps = 49/412 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+     G   +LP G    + +    RE  N+ G +E+S P + S  LW  SG +D Y 
Sbjct: 149 MMRDEGPGFPFFLPNGMVLKNTLLDYWREIHNKAGYVEISSPIMLSRHLWETSGHWDHYQ 208

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   + D  D A+   P +      +++S  +SYR+LP    ++ L  R E   +  G
Sbjct: 209 ENMYTTVIDEEDFAI--KPMNCPGGVLVYQSEPRSYRDLPLRMGELGLVHRHEKSGQLHG 266

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           +MR R F   DA+ F + PE  K     +     +++   G K                 
Sbjct: 267 LMRVRCFTQDDAHIF-MMPEQIKDEIKGVAALIDQVYSLFGFKY---------------- 309

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKL 267
             + L+   E  +   +D+ +    S  +  DD + L+ +V +   A Y    D H E  
Sbjct: 310 -HVELSTRPEDSMGSDEDW-EMATDSLRSALDD-LGLDYVVNEGDGAFYGPKIDFHLE-- 364

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGKDHY-VQMGSYGIGAM-R 323
            DS+        R  + G I      + LP+     + GADG+ H  + +     G++ R
Sbjct: 365 -DSI-------GRTWQCGTI---QLDFQLPLRFDLHYTGADGEKHRPIMIHRVAFGSIER 413

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE         +P  +AP ++ +I I        +   K+   L   G     D 
Sbjct: 414 FIGILIEHFAGA----FPTWLAPVQVKVIPISDKH---LEYGTKVLDALKAAGIRAEIDT 466

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E++G +   A L   P  ++VG K   +  V ++ R  G    MSL++ I
Sbjct: 467 RAEKMGYKIREAQLHKIPYMLVVGGKEEENQAVSVRSRFKGDEGQMSLDDFI 518


>gi|256810346|ref|YP_003127715.1| prolyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793546|gb|ACV24215.1| prolyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 455

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 160/420 (38%), Gaps = 73/420 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP G K       IIR+  +++G  E   P L   DL   E+     +  E+  
Sbjct: 24  KGCGVYLPYGFKIRRYTFEIIRDLLDKSGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYW 83

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  +  + +  +K + +LP   YQI   FR E +    ++R
Sbjct: 84  VTHGGKTPLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +  K+A++   T E ++    +    Y + F  LG   IP      P         
Sbjct: 144 LREIMTFKEAHTAHSTKEEAEEQVKEAISIYKKFFDTLG---IPYLISKRP--------- 191

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP       FD I      ++         + VHN      
Sbjct: 192 ---------------EWDKFPGAEYTMAFDTIFPDGRTMQ--------IATVHN------ 222

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                               G  +S      F+   G   Y     YGI   RV+A++I 
Sbjct: 223 -------------------LGQNFSKTFEIIFETPTGDKDYAYQTCYGISD-RVIASIIA 262

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG+I P  VAP +I +I +  K  + V  +  +++Y +L K    V  DD   + 
Sbjct: 263 IHGDEKGLILPPIVAPIQIVIIPLIFKGKEDVVMEKAKELYEKL-KDKYRVHIDDRDIRP 321

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR---EDMSLEEVINYASHRFSNN 445
           G +F   ++ G PL++ +G K + + K+ +  R T  +   ++  LEEVI    +    N
Sbjct: 322 GRKFNDWEIKGVPLRIEIGPKDIENGKITLFRRDTMEKFQVDESELEEVIEKTLNNIMEN 381


>gi|332362439|gb|EGJ40239.1| threonine--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 654

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 261 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 320

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 321 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 380

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 381 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 428

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 429 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 480

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 481 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 529

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 530 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 584

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 585 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 623


>gi|21909901|ref|NP_664169.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896400|ref|NP_802750.1| threonyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|25453285|sp|Q8K8C0|SYT_STRP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21904088|gb|AAM78972.1| putative threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811651|dbj|BAC64583.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes SSI-1]
          Length = 647

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 169/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIQEEFQRALQLIIDVYADFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 YR-----DPNDTHKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + +  V ++   +      S+EE +
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVRRYGSKATHTESVEEFV 630


>gi|153854756|ref|ZP_01995990.1| hypothetical protein DORLON_01988 [Dorea longicatena DSM 13814]
 gi|149752663|gb|EDM62594.1| hypothetical protein DORLON_01988 [Dorea longicatena DSM 13814]
          Length = 479

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 158/405 (39%), Gaps = 70/405 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    + + A +      TG   + +P L    L   E+   + +  E+  
Sbjct: 37  KGCMNYLPNGYAIWELIQADLDRRFKETGVENVYLPVLIPESLLEKEADHVEGFAPEVAW 96

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     +R  + +   PT E +  D++   +KSYR+LP  + Q    L++    RP    
Sbjct: 97  VTHGGMERLQERLCVRPTSETLFCDLWAKTVKSYRDLPKVWNQWNSVLRWEKTTRP---F 153

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +RSREFL ++ ++   T E ++    +M+  Y   +      +IP  A     G    HE
Sbjct: 154 LRSREFLWQEGHTLHATYEEAEERTIQMWEVYKDCYKET--MAIPFVA-----GRKAEHE 206

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+                         D  ++ +++    A  +ATS         
Sbjct: 207 KFAGAE-------------------------DTYTIEALMHDGKALQSATS--------- 232

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                              +FG  +       +   + + H     S+G  + R + A+I
Sbjct: 233 ------------------HFFGNGFPDAFGIKYVDKNNELHSAYETSWGW-STRSIGALI 273

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               D  G++ P  VAP +  +I I  H +   D    +   L K G  V  DD  +  G
Sbjct: 274 MVHGDDDGLVLPPHVAPVECRIIPIAQHKEGVLDRSYALLDELKKAGYRVKIDDSDKSTG 333

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +F+  ++LG P ++ +G K +  ++V +  R    +  +SL+E+
Sbjct: 334 WKFSEQEILGIPTRIEIGPKDIEKNQVVVVRRDNREKIVVSLDEI 378


>gi|332358692|gb|EGJ36515.1| threonine--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 647

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|325694840|gb|EGD36745.1| threonine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 647

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMDVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|297250596|ref|ZP_06864620.2| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838509|gb|EFH22447.1| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 648

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 154/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 441

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 442 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 499

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 500 PERLNAEYVTENNDRARPVML-------------------------HRAILGSL----ER 530

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D 
Sbjct: 531 FIGILIE-NHAGSFPLW---LAPIQMVIMNITENQA---DYCREVAAKLQAAGFRVELDL 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 584 RNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 621


>gi|332367135|gb|EGJ44871.1| threonine--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 647

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|167749880|ref|ZP_02422007.1| hypothetical protein EUBSIR_00848 [Eubacterium siraeum DSM 15702]
 gi|167657192|gb|EDS01322.1| hypothetical protein EUBSIR_00848 [Eubacterium siraeum DSM 15702]
          Length = 639

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 164/436 (37%), Gaps = 47/436 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T  I     G   +LP G    + +    R+   R G
Sbjct: 232 YLNMIEEAKKRDHRKLGKELELFT--IMDEGPGFPFFLPKGMTLKNTLIDYWRQIHTRDG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y KE +     +D      P +      +++S  +SY
Sbjct: 290 YVEISTPIMLNRQLWETSGHWDHY-KENMYTTVIDDTEFAIKPMNCPGGILVYKSKPRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+MR R F   DA+ F +TP+        +      +
Sbjct: 349 RDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIF-MTPDQITDEIKGVVRLIDEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K                  + V   T       S++  D          D +  
Sbjct: 408 YKLFGFK------------------YHVELSTQPEDSMGSQEDWDMATEGLRKALDSLGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATF 302
              + E   A Y    D H E   DSL        R  + G I      + LPM     +
Sbjct: 450 PYVVNEGDGAFYGPKIDFHLE---DSL-------GRTWQCGTI---QLDFQLPMRFELEY 496

Query: 303 KGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQV 360
            GADG+ H  + +     G++     ++     G   IW   +AP ++ L+ I   H++ 
Sbjct: 497 TGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPIADRHNEF 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 K+ A L K G  V  D   E+IG +   A L   P  +++G K V    V I+ 
Sbjct: 554 ----TSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETENVSIRC 609

Query: 421 RLTGIREDMSLEEVIN 436
           R  G    MS+ +  +
Sbjct: 610 RKRGDIGTMSVSDFCD 625


>gi|327461002|gb|EGF07335.1| threonine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 647

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|325690794|gb|EGD32795.1| threonine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 647

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMDVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|229087132|ref|ZP_04219282.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696200|gb|EEL49035.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 643

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 227 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 286

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 287 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 346

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 347 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 405

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M     S   +
Sbjct: 406 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQSMLKE 451

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L     E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 452 AMDEMGLEYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 503

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 504 ---TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 556

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 557 P--QVHLDYAKKVQEELQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 614

Query: 416 VEIK 419
           V ++
Sbjct: 615 VNVR 618


>gi|327463110|gb|EGF09431.1| threonine--tRNA ligase [Streptococcus sanguinis SK1]
          Length = 647

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|288576250|ref|ZP_05978464.2| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288565905|gb|EFC87465.1| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 643

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 261 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 321 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 379

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 380 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 436

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 437 DVWDKAEQGLRDALTACGVEWDELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 496

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 497 RLDAEYVTENNDRARPVML-------------------------HRAILGSLE----RFI 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 528 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCCEVAAKLQAAGFRVELDLRN 580

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 581 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 616


>gi|304314752|ref|YP_003849899.1| prolyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588211|gb|ADL58586.1| prolyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 465

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 169/430 (39%), Gaps = 85/430 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++F  IL+E    AEI   +  +         KG++ W+P G +   N   I++   +R
Sbjct: 5   SEWFHNILEE----AEIIDQRYPV---------KGMHVWMPHGFRIRKNTLNILKRILDR 51

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
               E+  P L   D L  E+     +  E+  +      +  + +   PT E VM  +F
Sbjct: 52  DHE-EVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMF 110

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              ++S+ +LP  FYQI   FR E                           +KH+   + 
Sbjct: 111 ALWVRSHTDLPMRFYQIVNTFRYE---------------------------TKHTRPLIR 143

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           V  +  F                     +H     AD  E QV  + +           +
Sbjct: 144 VREITTFKE-------------------AHTIHATADEAEEQVERAIEIY--------RE 176

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLP 297
           F D + +  ++ +   P+           FD+L P+ K      +++G +   G  ++  
Sbjct: 177 FFDSLGIPYLITK-RPPWDKFPGSDYTMAFDTLMPDGK-----TLQIGTVHNLGQTFART 230

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--- 354
               F+  +G+  YV    YG+   RV+A+VI    D  G+  P  VA  ++ ++ +   
Sbjct: 231 FEIKFENPEGEHEYVHQTCYGLSD-RVIASVIAVHGDESGLCLPPEVAAHQVVIVPVIFK 289

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           KA D+V  +AC  +   L   G  V  DD   + G ++   ++ G PL+V +G + + ++
Sbjct: 290 KAADEVM-EACRDLRDSLGDAGFRVHLDDRDLRAGRKYYEWEMRGVPLRVEIGPRDLENN 348

Query: 415 KVEIKHRLTG 424
              I  R TG
Sbjct: 349 SAVISRRDTG 358


>gi|325136057|gb|EGC58667.1| threonyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 643

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 261 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 321 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 379

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 380 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 436

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 437 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 496

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 497 RLNAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 528 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 580

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 581 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 616


>gi|125718378|ref|YP_001035511.1| threonyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166225508|sp|A3CP56|SYT_STRSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125498295|gb|ABN44961.1| Threonyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 647

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDFFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|312131710|ref|YP_003999050.1| prolyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311908256|gb|ADQ18697.1| prolyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 490

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 146/348 (41%), Gaps = 79/348 (22%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E V+ + +++ ++S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETVIWNSYKNWVQSHRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +    N+M   Y +                                     
Sbjct: 174 HTAHATREEAVAETNQMLEVYAKF------------------------------------ 197

Query: 221 VFCSKDFMDFPI----PSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              ++++M  P+     + N  F   DD + + ++++   A  A TS             
Sbjct: 198 ---AEEWMAVPVVRGRKTANERFAGADDTLCIEALMQDGKALQAGTS------------- 241

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                          + G  ++      F+   GK  +V   S+G+ + R++ A+I +  
Sbjct: 242 --------------HFLGQNFAKAFDVKFQDKTGKQEFVWGTSWGV-STRLMGALIMAHS 286

Query: 334 DGKGIIWPDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDV-FWDDMGEQIG 389
           D  G++ P  +AP ++ ++ I K  +Q+    +  E     L   G  V F DD   + G
Sbjct: 287 DDLGLVLPPKLAPIQVVIVPIYKGEEQLNAIFERMEPTIKSLKVQGISVKFDDDDSARPG 346

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +FA  +L G P+++ VG++ + + +VE+  R T  +E +S++ +  Y
Sbjct: 347 WKFAEYELKGVPVRIAVGARDLENHQVEVARRDTLSKESVSMDGLDQY 394


>gi|309364909|emb|CAP23504.2| CBR-TARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 729

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 172/420 (40%), Gaps = 61/420 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             HQ S G   W P G    + +   IR++  R G  E+  P + +  LW  SG +  Y 
Sbjct: 337 FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYS 396

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++M ++    ++  +  P +      +F     +Y  LPF F    +  R+E+     G+
Sbjct: 397 EDMFKIEVEKEEFGL-KPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGL 455

Query: 150 MRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIG 203
            R R F   DA+ F   D   E  K   + +  +Y ++F    +L L + P     G +G
Sbjct: 456 TRVRRFQQDDAHIFCRQDQISEEIKQCLDFLEYAYEKVFGFTFKLNLSTRP----EGFLG 511

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYA 257
                  I   D  E                     D   +LN+   +W       A Y 
Sbjct: 512 K------IETWDQAEA--------------------DLTEALNATGRKWALNPGDGAFYG 545

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              D+    + D+L  N + +   ++    F    ++ L   + F     K   V +   
Sbjct: 546 PKIDI---TIQDALKRNFQCATIQLD----FQLPNQFDL---SYFDEKGEKQRPVMIHRA 595

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++  + A++  S+ GK   WP  ++P +  +I +  H+ V RD  + +  ++   G 
Sbjct: 596 VLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV--HESV-RDYAKDVKKQIFDAGF 649

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +D+  G+ +  Q   + L  F   +++G+K   +  V ++ R   +R ++ +E++++
Sbjct: 650 EVEYDEFCGDTMNKQVRNSQLAQFNFILVLGAKEKENGTVNVRTRDNAVRGEVPIEKLLS 709


>gi|328946743|gb|EGG40881.1| threonine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 647

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|291299687|ref|YP_003510965.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290568907|gb|ADD41872.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 468

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 161/397 (40%), Gaps = 67/397 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A + +    TGA   S P L   + L  E+   + +  E   +     K
Sbjct: 39  PTGFALWERMVAEMDDRIKETGAENASFPLLIPQSYLSKEAQHVEGFAPECWTVTHAGGK 98

Query: 103 AM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +    +  PT E V+ +     +KSYR+LP    Q     R E+R R   +RS EFL +
Sbjct: 99  ELEEPVVVRPTSETVIGESMSRWVKSYRDLPLLLNQWCNVMRYEMRTRL-FLRSSEFLWQ 157

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E +  +YN+      RI H                                
Sbjct: 158 EGHTAHATFEDAA-AYNR------RILH-------------------------------- 178

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +V+  +DFM           +++++L       TA       ++       + + K + 
Sbjct: 179 -EVY--QDFM-----------ENVVALPVFTGLKTAAERFAGAINTFTCEAMMRDGKALQ 224

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A     G     G  ++      + G+DGK H+    S+G+ + R+V A+I    D  G+
Sbjct: 225 A-----GTAHELGQNFAKAFDIQYLGSDGKQHHAWTTSWGV-STRMVGALIMGHGDDSGL 278

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
             P  +AP +  ++ +K  + V  +A  K +A L   G     +D  +   G +   A+L
Sbjct: 279 RVPPRLAPVQAYVMTVKDGEGVS-EAAAKTHAALRAAGVRSKLNDRSDVAFGRRAVDAEL 337

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G+P+++ +G + V++ K  +  R+ G +  +SL+ V
Sbjct: 338 KGYPVRLEIGPRDVAEGKAMLVRRIAGTKTQVSLDGV 374


>gi|126657277|ref|ZP_01728443.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126621548|gb|EAZ92259.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 607

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 86/424 (20%), Positives = 168/424 (39%), Gaps = 56/424 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG + +Y ++M  + 
Sbjct: 221 GLPLWTPKGTIIRSTLEDFLKQEQLKRGYLPVVTPHIGRVDLFKISGHWQNYKEDMFPMM 280

Query: 98  DRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             N++A       +  P +      I++S ++SYR+LP    +    +R E      G+ 
Sbjct: 281 AENEEAKTSEMGFVLKPMNCPFHIQIYKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLT 340

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL---S 207
           R R F + D++ F +TP+     +  +    L +F  L LK+   R        D    S
Sbjct: 341 RVRGFTVDDSHLF-VTPDQLDDEFLNVVDLILSVFRSLQLKNFKARLSFRDPNSDKYIGS 399

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAATSDVHN 264
           +E    A+    +   + D   F    E   +    D I  +++  +W            
Sbjct: 400 NEAWNKAENAIRRAVQTLDMNYFEAEGEAAFYGPKLDFIFQDALEREW------------ 447

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGA 321
                             ++G +      Y+LP      + G +G  H  V +     G+
Sbjct: 448 ------------------QLGTV---QVDYNLPERFELEYVGEEGNRHRPVMIHRAPFGS 486

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +  +  ++   + G   +W   +AP ++ L+ +     V  D  + I  ++  +G     
Sbjct: 487 LERLIGILIEEYAGDFPLW---LAPIQVRLLPV---SDVQLDYVKDIANKMLSLGIRAEA 540

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  GE++G      +    P+  IVG+K V  + + I+ R +G    M+++EVI      
Sbjct: 541 DTSGERLGKMIRNGEKQKIPVMAIVGAKEVEANALSIRTRASGELGTMAVDEVIEKLRDT 600

Query: 442 FSNN 445
            +N+
Sbjct: 601 ITNH 604


>gi|311693962|gb|ADP96835.1| threonyl-tRNA synthetase [marine bacterium HP15]
          Length = 641

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 96/440 (21%), Positives = 176/440 (40%), Gaps = 79/440 (17%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  + G+ H  + + G+  W P G      +   +R +Q   G  E+  P 
Sbjct: 237 EAEKRDHRKVGKKLGLFHMQEEAPGMVFWHPDGWSLYQEIEQYMRRKQQEHGYKEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + S +LW +SG +D +  +M    ++++D A+   P +      +F   +KSY++LP   
Sbjct: 297 VVSRNLWEKSGHWDKFKDDMFTTESEKHDYAI--KPMNCPCHVQVFNQGLKSYKDLPLRL 354

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R+E      G+MR R F   DA+ F       + +  +   S++ + H     
Sbjct: 355 AEFGSCHRNEASGALHGLMRVRGFTQDDAHIF-----CEEDAIQQEVSSFIEMLHE---- 405

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                               +  D G T++     +     P +    D++         
Sbjct: 406 --------------------IYTDFGFTEIL----YKLSTRPEKRVGSDEV--------- 432

Query: 252 WTAPYAATSDVHNEKLFDS--LPENKRVSARGIE------VGHIFYFGT---KYSLP--M 298
           W    AA  +  N +  D   LP         IE      +G ++  GT    +S+P  +
Sbjct: 433 WDKAEAALEEALNREGVDWELLPGEGAFYGPKIEFSLKDCIGRVWQCGTIQVDFSMPGRL 492

Query: 299 SATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            A +   + +       H   +GS+     R +  +IE  ++G    W   +AP +++++
Sbjct: 493 GAQYVADNSERKTPVMLHRAVLGSF----ERFIGILIE-EYEGAFPTW---LAPTQVAIL 544

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           NI  +    RD C+ +  +   +G  V  D   E+IG +     L   P  V+VG K V 
Sbjct: 545 NITDNQ---RDYCQNLAKKWDSLGYRVNADLRNEKIGFKIREHTLNKVPYLVVVGDKEVE 601

Query: 413 DSKVEIKHRLTGIREDMSLE 432
           ++ V ++ R       +SLE
Sbjct: 602 NNAVAVRTRKGEDLGTLSLE 621


>gi|332358962|gb|EGJ36783.1| threonine--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 647

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|161869662|ref|YP_001598829.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|189083614|sp|A9M375|SYT_NEIM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161595215|gb|ABX72875.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 637

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 430

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 431 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVL 488

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 489 PERLGAEYVTENNDRARPVML-------------------------HRAILGSL----ER 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 520 FIGILIE-NHAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRAELDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 573 RNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|289167501|ref|YP_003445770.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
 gi|288907068|emb|CBJ21902.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
          Length = 647

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|121634517|ref|YP_974762.1| threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|120866223|emb|CAM09963.1| putative threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325131827|gb|EGC54527.1| threonyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 648

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 149/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVAVKLSLRPEQRAGSD 441

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           E    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 442 EVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 501

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 502 RLDAEYVTENNDRARPVML-------------------------HRAILGSLE----RFI 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 533 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 585

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 586 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 621


>gi|320160257|ref|YP_004173481.1| putative prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994110|dbj|BAJ62881.1| putative prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 545

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 76/165 (46%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+ V     F + +       +   +G+   V M  + +   R  A + E  HD  G+I
Sbjct: 379 RGLTVARSIRFSSDFIRDRGLNYFDENGQSRPVWMEIHTLNLTRTFACLAELRHDNYGLI 438

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P   +PF++ L+ +   +     A  ++  +L ++  DV  DD  E  G +F  ADL+G
Sbjct: 439 LPPQASPFEVHLVVLPGKENGVASALPEVLKQLEQMNLDVLVDDRSESPGVKFNDADLIG 498

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            P+++ +  + +    +E++ R    R+ + LE++ ++     S 
Sbjct: 499 VPVRLTLSERSLQQGGIEVRKRWESERQTIPLEDLSDWIRKSLSQ 543


>gi|325127774|gb|EGC50682.1| threonyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 637

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLNAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|160890380|ref|ZP_02071383.1| hypothetical protein BACUNI_02821 [Bacteroides uniformis ATCC 8492]
 gi|270296935|ref|ZP_06203134.1| prolyl-tRNA synthetase [Bacteroides sp. D20]
 gi|317479089|ref|ZP_07938230.1| prolyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860112|gb|EDO53543.1| hypothetical protein BACUNI_02821 [Bacteroides uniformis ATCC 8492]
 gi|270272922|gb|EFA18785.1| prolyl-tRNA synthetase [Bacteroides sp. D20]
 gi|316904745|gb|EFV26558.1| prolyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 497

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/345 (20%), Positives = 143/345 (41%), Gaps = 65/345 (18%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++ +    T   ++    +  V  L ++     K + +    G                
Sbjct: 173 WQEGH----TAHATREEAEEEAVKMLNVYAEFAEKYMAVPVVKG---------------- 212

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                          + S N  F   ++  +I                        E   
Sbjct: 213 ---------------VKSANERFAGALNTYTI------------------------EAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  + ++     EK   I A+L  +G  V +D+   ++ G +F
Sbjct: 293 GLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMGISVKYDNADNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           A  ++ G P+++++G + + ++ +EI  R T  +E  S E +  Y
Sbjct: 353 ADYEVKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCEGIEEY 397


>gi|209558991|ref|YP_002285463.1| threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238065119|sp|B5XKA6|SYT_STRPZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209540192|gb|ACI60768.1| Threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 647

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 169/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG +D Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWDHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H++SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVRSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIQEEFQRALQLIIDVYADFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 YR-----DPNDTHKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKILRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+E+ +
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRRYGSKATHTESVEDFV 630


>gi|88607718|ref|YP_505783.1| threonyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|88598781|gb|ABD44251.1| threonyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 615

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 86/421 (20%), Positives = 166/421 (39%), Gaps = 51/421 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   + G   W   G      +   +R++    G  E+  P +    LW +SG ++ + +
Sbjct: 232 IQNEALGQVFWHDKGWTLYRTIEEYLRKKLRENGYTEIKTPIMLDRKLWEKSGHWEKFRE 291

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR-PRFGVM 150
            M  ++D+N + +   P +      IF+S  +SY++LP    +  +  R+E     +G+M
Sbjct: 292 NMFIVSDQNSQELAIKPMNCPCHVQIFKSKTRSYKDLPIRMAEFGMCHRNEPSGSLYGLM 351

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +    K +   + +++  G K+I ++    P   IG D  
Sbjct: 352 RVRGFTQDDAHIF-CTHDQIRDEVRKFYKLLVEVYNDFGFKNIDVKLSDRPEERIGSD-- 408

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                     E      +  MD          DD     +I +   A Y    +     L
Sbjct: 409 ----------EMWDMAERSLMD--------SMDDEGVKYTINKGDGAFYGPKLEF---TL 447

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D+L  N +     ++          + LP  + A + G+DG  H+  M    I G +  
Sbjct: 448 KDALGRNWQCGTIQLD----------FVLPSRLGAYYVGSDGNKHHPVMIHRAILGTLER 497

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++  S+ G    W   +AP ++ ++ + ++     +    +  +  +    V  +  
Sbjct: 498 FIGILIESYAGNLPAW---LAPVQLEILTVNSN---ALEYATTLANKAREHNIRVELNSG 551

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVINYASH 440
            E IG +   +     P+  +VGS   +D  V ++H  T     +  D +L+ ++ Y S 
Sbjct: 552 EESIGQKIRKSIFNKIPVLWVVGSAETADCTVSVRHYGTSNACSMEADKALKTLVTYVSI 611

Query: 441 R 441
           R
Sbjct: 612 R 612


>gi|291557532|emb|CBL34649.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           siraeum V10Sc8a]
          Length = 639

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 164/436 (37%), Gaps = 47/436 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T  I     G   +LP G    + +    R+   R G
Sbjct: 232 YLNMIEEAKKRDHRKLGKELELFT--IMDEGPGFPFFLPKGMTLKNTLIDYWRQIHTRDG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y KE +     +D      P +      +++S  +SY
Sbjct: 290 YVEISTPIMLNRQLWETSGHWDHY-KENMYTTVIDDTEFAIKPMNCPGGILVYKSKPRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+MR R F   DA+ F +TP+        +      +
Sbjct: 349 RDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIF-MTPDQITDEIKGVVRLIDEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K                  + V   T       S++  D          D +  
Sbjct: 408 YKLFGFK------------------YHVELSTQPEDSMGSQEDWDMATEGLRKALDSLGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATF 302
              + E   A Y    D H E   DSL        R  + G I      + LPM     +
Sbjct: 450 PYVVNEGDGAFYGPKIDFHLE---DSL-------GRTWQCGTI---QLDFQLPMRFELEY 496

Query: 303 KGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQV 360
            GADG+ H  + +     G++     ++     G   IW   +AP ++ L+ I   H++ 
Sbjct: 497 TGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPIADRHNEF 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 K+ A L K G  V  D   E+IG +   A L   P  +++G K V    V I+ 
Sbjct: 554 ----TSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETENVSIRC 609

Query: 421 RLTGIREDMSLEEVIN 436
           R  G    MS+ +  +
Sbjct: 610 RKRGDIGTMSVADFCD 625


>gi|240016048|ref|ZP_04722588.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
          Length = 648

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 442 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 501

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R V
Sbjct: 502 RLDAEYVTENNDRARPVML-------------------------HRAILGSLE----RFV 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE ++ G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 533 GILIE-NYAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 585

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 586 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|325137877|gb|EGC60452.1| threonyl-tRNA synthetase [Neisseria meningitidis ES14902]
          Length = 637

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 149/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVAVKLSLRPEQRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           E    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 431 EVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|308388909|gb|ADO31229.1| putative threonyl-tRNA synthetase [Neisseria meningitidis alpha710]
 gi|325202484|gb|ADY97938.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325207764|gb|ADZ03216.1| threonyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 637

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLNAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|198275235|ref|ZP_03207766.1| hypothetical protein BACPLE_01394 [Bacteroides plebeius DSM 17135]
 gi|198271818|gb|EDY96088.1| hypothetical protein BACPLE_01394 [Bacteroides plebeius DSM 17135]
          Length = 646

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 160/429 (37%), Gaps = 67/429 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +      I+++  +SYR+LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYRDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K  + ++      +F  +GL++   +              I 
Sbjct: 380 RSFTQDDAHIF-CRPDQVKDEFLRVMDIISIVFTSMGLENFEAQ--------------IS 424

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D    + +   D                       E W     A  +   EK   +  
Sbjct: 425 LRDKENREKYIGSD-----------------------ENWEKAEQAIVEACEEKGLKAKV 461

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      + G+D + H  V +    
Sbjct: 462 EYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYMGSDNQKHRPVMIHRAP 521

Query: 319 IGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            G+M R VA +IE +  GK  +W  PD VA   IS        +   D  +K+   L K 
Sbjct: 522 FGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYADKVRMELKKY 572

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                 DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M +EE  
Sbjct: 573 DVRALVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVRKQGEGDKGTMKIEEFA 632

Query: 436 NYASHRFSN 444
              +    N
Sbjct: 633 KNIAEEVHN 641


>gi|76155685|gb|AAX26970.2| SJCHGC07933 protein [Schistosoma japonicum]
          Length = 118

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 50/89 (56%)

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + GA  + +PTL   ++W +SGR+      + +L DR        PTHEE +T    S  
Sbjct: 14  KLGAQRVQLPTLGPRNMWEKSGRWSEMHSSLFKLRDRLSHDYCLQPTHEECITSFVTSLK 73

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            SY++LP   YQI  KFRDE RP+ G++R
Sbjct: 74  LSYKSLPVFLYQITSKFRDEPRPKNGLIR 102


>gi|325133766|gb|EGC56422.1| threonyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325144077|gb|EGC66385.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325206438|gb|ADZ01891.1| threonyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 637

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLNAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|190571398|ref|YP_001975756.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018797|ref|ZP_03334605.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|238055114|sp|B3CMJ4|SYT_WOLPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190357670|emb|CAQ55114.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995748|gb|EEB56388.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 633

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 157/407 (38%), Gaps = 45/407 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W   G    + + + IR++    G  E+  P L S +LW +SG +D + +
Sbjct: 253 IQEEAVGQIFWHEQGYTLYNVLESYIRKKLMNNGYFEVKTPILVSKELWEKSGHWDKFRE 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + +   K +   P +      IF SHI+SYR+LP    +     R+E      G+M
Sbjct: 313 NMFIIDESESKKLAIKPMNCPCHVQIFNSHIRSYRDLPIRMAEFGTCHRNESSGSLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHE 209
           R R F   DA+ F +  E   +S    F   L+ ++  LG   I ++    P     + E
Sbjct: 373 RVRGFTQDDAHIFCM--EKQVNSETVKFCDLLKEVYSELGFNEISVKFSDRPDTRSGNDE 430

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAATSDVHNEK 266
               A+    +            P E   +    + I  ++I   W         +    
Sbjct: 431 VWDRAERALLEAVKEAGLSYELNPGEGAFYGPKLEFILKDAIGRNWQCGTLQVDFI---- 486

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVV 325
               LPE  R+ A        FY GT             DG K H V +    +G     
Sbjct: 487 ----LPE--RLGA--------FYIGT-------------DGHKHHPVMLHRAILGTFERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++  ++ GK  +W   +AP +++++ I            +I   L + G  +  D   
Sbjct: 520 IGILIENYAGKFPVW---LAPTQLAILTITNESD---GYATEISNVLKEQGVRIKTDLTN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           E+I  +  +      P+  I+G   V++  V +++  +  +E  SLE
Sbjct: 574 EKISYKIRLHSSSKVPILWIIGKNEVTNKTVSVRNLGSEKQESFSLE 620


>gi|156097506|ref|XP_001614786.1| prolyl-t-RNA synthase [Plasmodium vivax SaI-1]
 gi|148803660|gb|EDL45059.1| prolyl-t-RNA synthase, putative [Plasmodium vivax]
          Length = 476

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 27/237 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F  I  +  + +   + +L+ R   I +   G+Y+ LPLG K+++ + + +     R  +
Sbjct: 7   FNKICNDTDKQSGDKASELLQRANYI-RDVNGLYNLLPLGYKSIEKIISFLNTHLKRVNS 65

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL-------ADRN-------------DKAMIY 106
             + +  LQ+   W  S R   Y  E L +        D N             D  +I 
Sbjct: 66  HCLFMSILQAKKWWNISDRSKLYSDEFLHVYKQKQQKGDSNKGTEAVMGKKKMEDDGLIL 125

Query: 107 GPTHEE----VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            PT EE    ++  ++  +I + ++LP   +Q   KFR+E R    + +S+EFLMKD YS
Sbjct: 126 SPTCEEQAISLINQVYNENIPA-KSLPLLIHQFNYKFRNEKRLEKTLFKSKEFLMKDGYS 184

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
           F         +Y      Y ++F  L L   +  + +   +    SHEF VL   G+
Sbjct: 185 FHSNDICLSETYEAYKECYEKVFSHLKLPFKVTKKRKMDKMNALESHEFQVLCRDGK 241



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 45/170 (26%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E  HIF  G  YS  +   +     +   + MGSYGIG  R++  +++S +DG+GI  P 
Sbjct: 244 EAAHIFKLGDYYSRKLGIKYLNKRNEKSNIFMGSYGIGIYRLLYFLVDSFYDGEGIRLPA 303

Query: 343 SVAPFKISLINIKAHDQVCRDACEKI---------------------------------- 368
            VAPF + LI      +       KI                                  
Sbjct: 304 QVAPFSVYLIQTNQRSKYSAAKVAKIGKLAQANEAVQAVEAVQAVNSPNVPSAPTPPLNS 363

Query: 369 -----------YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
                      Y        D+++DD    +  +    DL+G P ++I+ 
Sbjct: 364 NDVEYVLTLWLYNSFKNSDVDIYYDDTDLHLSRKLKNCDLIGVPNRIIIN 413


>gi|284799642|ref|ZP_05984463.2| threonine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284797591|gb|EFC52938.1| threonine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 643

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 261 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 321 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 379

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 380 RVRGFVQDDAHIFCAEDQIVDEARAFNELLV---RIYKQFGFHDVAVKLSLRPEQRAGSD 436

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           E    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 437 EVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 496

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 497 RLNAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 528 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 580

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 581 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 616


>gi|86134203|ref|ZP_01052785.1| Threonyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821066|gb|EAQ42213.1| Threonyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 647

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 151/413 (36%), Gaps = 61/413 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G    + +   ++  Q + G   +  P +   +L+V SG Y+ YG++  +  
Sbjct: 262 GLPLWLPKGAALRERLQNFLKAAQKKAGYEMVMTPHIGQKELYVTSGHYEKYGEDSFQAI 321

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              + D+  +  P +     +++     SY++LP  F +    +R E      G+ R R 
Sbjct: 322 KTPKMDEEFLLKPMNCPHHCEVYNFKPYSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  TPE     + ++    L +F  LG                         
Sbjct: 382 FTQDDAHIF-CTPEQLDQEFKEVIDLVLYVFGSLG------------------------- 415

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                       F DF       D +++      VE W     A      +K  D + E 
Sbjct: 416 ------------FEDFTAQVSIRDMENLDKYIGDVETWEIAENAIISAAKDKGLDYVIEE 463

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP     T+ G+D + H  V +     G
Sbjct: 464 GEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPKRFDLTYTGSDNQSHRPVMIHRAPFG 523

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +M    AV+     G   +W   + P ++ ++ I    Q      EK+   L        
Sbjct: 524 SMERFIAVLLEHTGGNFPLW---LTPEQVIILPISDKYQ---KYTEKVLESLENSEIRAL 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            DD  E+ G +   A++   P  VIVG K   D  V ++    G     ++EE
Sbjct: 578 VDDRSEKTGRKIRDAEVSKIPFMVIVGEKEEQDGTVSVRKHGEGDIGTFTIEE 630


>gi|288553677|ref|YP_003425612.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288544837|gb|ADC48720.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 643

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 166/387 (42%), Gaps = 36/387 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P L S++L+  SG +D Y  +M  +
Sbjct: 264 QGLPLWLPKGATVRRVIERYIVDKEERLGYQHVYTPILGSSELYKTSGHWDHYKDDMFPV 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +R+++  +  P +      +++  ++SYR LP    ++ +  R E+     G+ R R  
Sbjct: 324 MERDNEEFVLRPMNCPHHMMVYKQDMRSYRQLPLRIAELGMMHRYEMSGAVSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++      ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-CRPDQIKEEFLRVVYLIQEVYKDFGLDDYKFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             + + +   D M     S   +  D + ++    E   A Y    DV   ++  +L ++
Sbjct: 429 PEDKEKYFDDDAMWEKAQSMLKEAMDELDVDYYEAEGEAAFYGPKLDV---QVRTALGKD 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA ++E  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYVGEDGQQHRPVVVHRGVVSTMERFVAFLLEEY 537

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +     V  D  +K+   L + G  V  D+  E+IG + 
Sbjct: 538 ---KG-AFPTWLAPVQVQVIPVSP--DVHLDYAKKVQDALQQAGARVEIDERNEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
             A +   P  +++G K +    V I+
Sbjct: 592 REAQMQKIPYMLVLGDKEMESGAVNIR 618


>gi|82701621|ref|YP_411187.1| threonyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|123727233|sp|Q2YBS6|SYT_NITMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82409686|gb|ABB73795.1| Ser-tRNA(Thr) hydrolase [Nitrosospira multiformis ATCC 25196]
          Length = 638

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/431 (21%), Positives = 163/431 (37%), Gaps = 53/431 (12%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  + G+ H  + + G+  W P G      V   +R+     G +E+  P+
Sbjct: 237 EAEKRDHRKLGKQLGLFHLQEEAPGMVFWHPKGWVVWQQVEQYMRDIFRNNGYLEIRTPS 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW  SG ++++ + M  +    D+     P +      +F+  +KSYR+LP    
Sbjct: 297 VLDKGLWERSGHWENFRENMF-VTQAEDREFSVKPMNCPGHVQVFKQGLKSYRDLPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E         F+  L ++++  G  
Sbjct: 356 EFGSCHRNEPSGALHGIMRVRAFTQDDAHIF--CTESQVQDEAVQFIDLLQKVYNDFGFN 413

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            I ++  + P     S E    A+         K+ +    P E   +   I  +     
Sbjct: 414 DILVKLSTRPAKRVGSEEQWDKAEEALRSALNHKNLIWELQPGEGAFYGPKIEFS----- 468

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGAD 306
                          L DS             +G I+  GT    +S+P  + A F   D
Sbjct: 469 ---------------LKDS-------------IGRIWQCGTLQLDFSMPERLGAEFVAED 500

Query: 307 GKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                  M    I G++     ++  +H G   +W   ++P    ++NI        D  
Sbjct: 501 NSRQIPVMLHRAILGSLERFIGILIENHAGALPLW---LSPDHAVVLNISEGQA---DYA 554

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L + G   + D   E+I  +     L   P Q+IVG K V+  +V ++ R    
Sbjct: 555 REVTEELRRAGIRAYADLRNEKITYKIREHSLQKLPYQIIVGDKEVAAQRVAVRTRSGSD 614

Query: 426 REDMSLEEVIN 436
              M+L  +++
Sbjct: 615 LGQMTLPALVD 625


>gi|268532388|ref|XP_002631322.1| C. briggsae CBR-TRS-1 protein [Caenorhabditis briggsae]
          Length = 704

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 172/420 (40%), Gaps = 61/420 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             HQ S G   W P G    + +   IR++  R G  E+  P + +  LW  SG +  Y 
Sbjct: 313 FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYS 372

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++M ++    ++  +  P +      +F     +Y  LPF F    +  R+E+     G+
Sbjct: 373 EDMFKIEVEKEEFGL-KPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGL 431

Query: 150 MRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIG 203
            R R F   DA+ F   D   E  K   + +  +Y ++F    +L L + P     G +G
Sbjct: 432 TRVRRFQQDDAHIFCRQDQISEEIKQCLDFLEYAYEKVFGFTFKLNLSTRP----EGFLG 487

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYA 257
                  I   D  E                     D   +LN+   +W       A Y 
Sbjct: 488 K------IETWDQAEA--------------------DLTEALNATGRKWALNPGDGAFYG 521

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              D+    + D+L  N + +   ++    F    ++ L   + F     K   V +   
Sbjct: 522 PKIDI---TIQDALKRNFQCATIQLD----FQLPNQFDL---SYFDEKGEKQRPVMIHRA 571

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++  + A++  S+ GK   WP  ++P +  +I +  H+ V RD  + +  ++   G 
Sbjct: 572 VLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV--HESV-RDYAKDVKKQIFDAGF 625

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +D+  G+ +  Q   + L  F   +++G+K   +  V ++ R   +R ++ +E++++
Sbjct: 626 EVEYDEFCGDTMNKQVRNSQLAQFNFILVLGAKEKENGTVNVRTRDNAVRGEVPIEKLLS 685


>gi|319637847|ref|ZP_07992613.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317401002|gb|EFV81657.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 637

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVDEARAFNELLV---RIYKQFGFHDVAVKLSLRPEQRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           E    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 431 EVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLNAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|316983701|gb|EFV62682.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 648

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ +   RI+ + G   + ++    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLI---RIYKQFGFHDVSVKLSLRPEKRAGSD 441

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 442 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVL 499

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 500 PERLNAEYVTENNDRARPVML-------------------------HRAILGSL----ER 530

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D 
Sbjct: 531 FIGILIE-NHAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRAELDL 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 584 RNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 621


>gi|154499081|ref|ZP_02037459.1| hypothetical protein BACCAP_03073 [Bacteroides capillosus ATCC
           29799]
 gi|150271921|gb|EDM99147.1| hypothetical protein BACCAP_03073 [Bacteroides capillosus ATCC
           29799]
          Length = 497

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   YFG  ++     TF G D + H+    S+G+ + R++  +I +  D  G++
Sbjct: 244 KALQAGTSHYFGDGFAKAFDITFTGKDNQLHHPHQTSWGV-STRMIGGLIMTHGDNNGLV 302

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P  +AP ++ +I +  H     +A + +  RL K G  V  DD  +  G +FA  ++ G
Sbjct: 303 LPPRIAPIQVIIIPVAQHKPGVIEANQAVMDRLIKAGFRVKMDDSDQSAGWKFAEYEMKG 362

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            PL++ +G K +  ++  +  R +G +  +SL+ +
Sbjct: 363 VPLRLELGPKDIEKNQCVLARRDSGEKSFVSLDGI 397


>gi|322372498|ref|ZP_08047034.1| threonine--tRNA ligase [Streptococcus sp. C150]
 gi|321277540|gb|EFX54609.1| threonine--tRNA ligase [Streptococcus sp. C150]
          Length = 648

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 159/399 (39%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEDEFKKILQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
              +   D  +   +   D M      EN         DD+       E   A Y    D
Sbjct: 422 ---LSYRDPADKHKYFDNDEM-----WENAQRMLKAAVDDMGVEYYEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   K+  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWKVAKKLRDRGVRAE 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616


>gi|218767842|ref|YP_002342354.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|22654142|sp|Q9JVA3|SYT_NEIMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121051850|emb|CAM08156.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 637

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEQRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|15676618|ref|NP_273762.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|22654143|sp|Q9K095|SYT_NEIMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|7225946|gb|AAF41133.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|325140125|gb|EGC62654.1| threonyl-tRNA synthetase [Neisseria meningitidis CU385]
 gi|325200596|gb|ADY96051.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 637

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ +   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLI---RIYKQFGFHDVSVKLSLRPEKRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLNAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|298369384|ref|ZP_06980702.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283387|gb|EFI24874.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 648

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/398 (20%), Positives = 153/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E +  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPRGWALWQTIEQHMRKELDAAGYREVKTPQIMDKAFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTQSEKREYAVKPMNCPGHVQIFNNSLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +       +N++ V   RI+ + G   + ++    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVDEARRFNELLV---RIYKQFGFHDVAVKLSLRPEKRAGSD 441

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +    A+ G  +    C  ++ + P                      A Y    + H   
Sbjct: 442 DIWDKAEQGLRDALTACGVEWEELPGEG-------------------AFYGPKIEYH--- 479

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF-KGADGKDHYVQMGSYGIGAMR 323
                   K    R  + G +      + LP  + A +   ++G+   V +    +G++ 
Sbjct: 480 -------VKDAIGRSWQCGTL---QLDFVLPDRLDAEYVTESNGRARPVMLHRAILGSLE 529

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++  +H G   +W   +AP ++ ++NI  H     D C ++  RL      V  D 
Sbjct: 530 RFIGILIENHAGSFPLW---LAPVQMVVMNITEHQT---DYCRQVVERLQAENFRVELDL 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 584 RNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 621


>gi|39938732|ref|NP_950498.1| prolyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|81830053|sp|Q6YQX7|SYP_ONYPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39721841|dbj|BAD04331.1| prolyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 474

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/411 (18%), Positives = 165/411 (40%), Gaps = 71/411 (17%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           + +  +KG   +LP G    +N+   +     +TG   +  P +    L+  E      +
Sbjct: 31  IAYSEAKGFIIYLPYGYALWENIQKHLNCTLQKTGHQNVYFPLVFPEKLFHKEKNHIQGF 90

Query: 90  GKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDEL 143
             E   +     K     ++  PT E + +  +   I SYR+LP  + Q    +++    
Sbjct: 91  SPEAAMITTTGKKNLSEKLVIRPTSEILFSQYYSKTITSYRDLPKLYNQWCNVVRWEKTT 150

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           +P    +R +EFL ++ ++   T + +     +  +S L I+ +L              G
Sbjct: 151 KP---FLRGKEFLWQEGHTVHATEQEAM----QQTLSILDIYQKL--------------G 189

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +L     V     ET+ F                   +I+           Y+  + +H
Sbjct: 190 KNLLALPFVCGKKTETEKFAGA----------------LIT-----------YSIEALMH 222

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +               + ++ G   Y GT ++      F+  D +  YV   S+G+ + R
Sbjct: 223 D--------------GQALQAGTSHYLGTNFAKSFQIQFQDCDHQKKYVHQTSWGV-STR 267

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A+I    D +G++ P  V+P +I +I ++  D   +   E +++ L K    V  D 
Sbjct: 268 LIGALIMVHSDDEGLVLPPYVSPMQIVIIPLQPQDDAVKQTSENLFSILQK-NYRVHLDL 326

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             +  G +F+  +L G PL++ +G + + + +V I  R    ++++  +++
Sbjct: 327 QDKTAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKTKDL 377


>gi|209969467|dbj|BAG80638.1| hypothetic protein [Streptococcus parauberis]
          Length = 395

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 173/429 (40%), Gaps = 47/429 (10%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P + S +L+  SG ++ Y
Sbjct: 1   MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPMASVELYKTSGHWEHY 60

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 61  QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 120

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 121 GLQRVREMTLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR---------LS 170

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 171 YR-----DPKDTHKYYDNDEM-----WENAQAMLKAALDEMGVDYFEAEGEAAFYGPKLD 220

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 221 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 269

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 270 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGIRAD 324

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI-NYAS 439
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+EE + N  +
Sbjct: 325 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKAVNVRRYGSKATHTESIEEFVDNILA 384

Query: 440 HRFSNNRPV 448
                +RPV
Sbjct: 385 DIARKSRPV 393


>gi|169347325|ref|ZP_02866263.1| hypothetical protein CLOSPI_00040 [Clostridium spiroforme DSM 1552]
 gi|169293942|gb|EDS76075.1| hypothetical protein CLOSPI_00040 [Clostridium spiroforme DSM 1552]
          Length = 479

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 138/347 (39%), Gaps = 73/347 (21%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREF 155
           D  ++ +I  PT E +  + +   + SYR+LP  + Q    +++    RP    +R  EF
Sbjct: 103 DNLEENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVRWEKTTRP---FLRGSEF 159

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LKSIPMRAESGPIGGDLSHEFIVL 213
           L ++ ++   T E + H   +M    L+I+      L +IP                +V 
Sbjct: 160 LWQEGHTIHATKEEAYHETLQM----LKIYEETARDLLAIP----------------MVT 199

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               E + F   +                           A Y   + +H+ K   S   
Sbjct: 200 GRKTEREKFAGAE---------------------------ATYTIEALMHDGKALQS--- 229

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                      G   YFG  ++      F   + K  YV   S+G+ + R++ A+I    
Sbjct: 230 -----------GTTHYFGQGFAKAFDMKFLSKENKLEYVYQTSWGV-STRLLGAIIMVHG 277

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++ P  VAP ++ +I I+   +   D   ++  RL  VG  V  D   +  G +F+
Sbjct: 278 DNNGLVLPPRVAPIQVMIIPIQQQKEGVLDKAYELEQRLKAVGIRVKVDASDKTPGWKFS 337

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE----DMSLEEVIN 436
            A++ G PL++ +G K +++    +  R  G++     D SLE+ I 
Sbjct: 338 DAEMRGIPLRLEIGPKDIANDVCVLAKRNDGMKAVYSLDGSLEDTIK 384


>gi|50365293|ref|YP_053718.1| prolyl-tRNA synthetase [Mesoplasma florum L1]
 gi|81827288|sp|Q6F0Y9|SYP_MESFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50363849|gb|AAT75834.1| prolyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 473

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YF   +S P    F+  +GK  +    S+G+ + R++ A+I +  D  G+
Sbjct: 221 GQALQCGTSHYFADNFSKPYEIKFQNKEGKLEHAYSTSWGV-STRLIGAIIMTHSDDNGL 279

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  V+P ++ LI IK  D+V +   +   A  +K   D+  D   +  G + + A++ 
Sbjct: 280 VLPSMVSPVQVRLIQIKETDEVIKVTEDIKEALKNKYRVDI--DKTDKSFGFKISEAEIK 337

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G PL++ +G + + +++V I  R T  +  +++ EV N
Sbjct: 338 GIPLRIEIGPRDLENNQVTISRRDTREKIQVNVNEVTN 375



 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYS 162
           PT E +M + F++ +KSYR+LP  F Q    +++    RP    +R+ EFL ++ ++
Sbjct: 110 PTSEVLMANFFKNEVKSYRDLPLIFNQWTNVMRWEKTTRP---FLRTSEFLWQEGHT 163


>gi|293363544|ref|ZP_06610300.1| proline--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552893|gb|EFF41647.1| proline--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 478

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 159/392 (40%), Gaps = 78/392 (19%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IY 106
           N+N I +E     G   + +P L    L+ +E    + +  E+  +    +K +      
Sbjct: 53  NLNEIFKER----GVNNVYLPLLIPESLFSLEKDHIEGFNPELATVTHVGNKELQEKYYI 108

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E +  D+F++ I SY +LP  + Q     R E +     +RSREFL ++ ++    
Sbjct: 109 RPTSEVLFADLFKNSIDSYNDLPLVYNQWANVVRWE-KTTNPFLRSREFLWQEGHTCHAD 167

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P  ++     M  +Y +                                         K+
Sbjct: 168 PIEARKLTRCMISTYAKFL---------------------------------------KN 188

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           F+  P               +IV + T PY   +   +    +++ ++ R     ++ G 
Sbjct: 189 FLAIP---------------TIVGKKT-PYEKFAGACSTYTVEAMMKDGR----ALQAGT 228

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             Y    +S P S  FK  + +   V   S+G+ + R++ A+I +  D +GII P  VAP
Sbjct: 229 SHYLAQNFSKPYSIVFKNKNNELENVYQTSWGV-STRLIGALIMTHGDNRGIIIPPRVAP 287

Query: 347 FKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
            +I LI +  A     ++  +K+Y  L +    V  D   +Q G + A +++ G PL++ 
Sbjct: 288 IQIDLIELFGAKSAKVKEVSQKLYELLRR-KWRVRVDASDKQPGFKAANSEIQGVPLRIE 346

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G + + +  V I      +R D   + ++NY
Sbjct: 347 IGPRDLENDMVTI------VRRDTLEKTLVNY 372


>gi|327490276|gb|EGF22064.1| threonine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 647

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYYDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQMAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|319936200|ref|ZP_08010620.1| prolyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319808774|gb|EFW05307.1| prolyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 479

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/410 (21%), Positives = 160/410 (39%), Gaps = 70/410 (17%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSY 89
           M +   KG   + P G    + + A + ++   TG   + +P L   + L  E+   + +
Sbjct: 32  MDYSSVKGFIIYRPYGYALWEMIQAYMDKKFKETGHENVYMPMLIPESLLQKEADHVEGF 91

Query: 90  GKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDEL 143
             E   +     D  ++ +I  PT E +  + +   + SYR+LP  + Q    +++    
Sbjct: 92  APECAVVTRGGLDNLEENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVRWEKTT 151

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP    +R  EFL ++ ++   T E ++    +M   Y        L +IPM        
Sbjct: 152 RP---FLRGSEFLWQEGHTIHATEEEARAETMQMLDIYEETSR--NLLAIPM-------- 198

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                   V     E + F           +E T                  Y   + +H
Sbjct: 199 --------VTGKKTEREKFAG---------AEET------------------YTIEALMH 223

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + K   S              G   YFG  ++      F   D K  YV   S+G+ + R
Sbjct: 224 DGKALQS--------------GTSHYFGDGFAKAFGIQFLDKDNKQKYVHQTSWGV-STR 268

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A+I    D  G++ P  VAP ++ +I I+       D   ++  +L   G  V  D 
Sbjct: 269 LLGAIIMVHGDDNGLVLPPRVAPTQVMIIPIQQQKDGVLDKAYELEQQLKAHGIRVKVDA 328

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             +  G +F+ A++ G PL++ VG + + + +  +  R+ G +  +SL+E
Sbjct: 329 TDKSPGWKFSEAEMRGIPLRLEVGPRDLENGQCVVAKRVNGEKITLSLDE 378


>gi|125973743|ref|YP_001037653.1| threonyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256005747|ref|ZP_05430701.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281417900|ref|ZP_06248920.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166223337|sp|A3DET1|SYT_CLOTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125713968|gb|ABN52460.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|255990281|gb|EEU00409.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409302|gb|EFB39560.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316940063|gb|ADU74097.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 635

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 172/416 (41%), Gaps = 57/416 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I++   G   ++P G    + +    REE  + G  E+  P + + +LW  SG +D Y K
Sbjct: 255 IYEEGPGFPFFMPKGMVLRNVLEEYWREEHRKAGYQEIKTPIILNEELWHRSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     ++      P +      +++  + SYR+LP    ++ L  R EL     G+M
Sbjct: 314 ENMYFTKIDEADFAIKPMNCPGGMLVYKRKLHSYRDLPQRLAELGLVHRHELSGVLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-GLK---SIPMRAESGPIGGDL 206
           R R F   DA+ F +TP+  +     + +S +  F+++ G K    +  R E+  +G D 
Sbjct: 374 RVRCFTQDDAHIF-MTPDQIESEILGV-ISLIDDFYKVFGFKYHVELSTRPENS-MGSDE 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E      T   +    K  +D+ I   +  F                Y    D H   
Sbjct: 431 DWE----RATNALKNALEKKGIDYKINEGDGAF----------------YGPKIDFH--- 467

Query: 267 LFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM 322
           L DS+        R  + G I   F    ++ L    T+ G DG+ H  V +     G++
Sbjct: 468 LEDSI-------GRTWQCGTIQLDFQMPERFDL----TYIGPDGEKHRPVMIHRVVFGSI 516

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVF 380
               A++   + G   +W   ++P ++ ++ I  K HD V      ++   L + G  V 
Sbjct: 517 ERFIAILTEHYAGAFPVW---LSPVQVKILPILEKQHDYVA-----EVKKALEEKGVRVE 568

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   E+IG +   A L   P  +++G K + +  V ++ R  G    M LE+ +N
Sbjct: 569 ADLRNEKIGYKIREAQLEKVPYMLVIGDKEMENRTVAVRSRKDGDLGPMRLEDFVN 624


>gi|205373971|ref|ZP_03226772.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 476

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 162/398 (40%), Gaps = 71/398 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLRLA----D 98
           P G K  +++   +  +   TG   + +P  +  + L VE    + +  E+  +     +
Sbjct: 43  PYGYKIWEHIKDQLDRKIKETGHENVYMPLFIPESLLQVEKDHIEGFAPEVAWVTHGGEE 102

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFL 156
           +  + +   PT E +  + +R+ I SYR+LP  + Q    +++    RP    +R+ EFL
Sbjct: 103 KLQERLCVRPTSEVLFAEHYRNIIHSYRDLPKLYNQWANVVRWEKTTRP---FLRTLEFL 159

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++ ++   T + +     KM   Y  I   L   +IP                ++    
Sbjct: 160 WQEGHTCHETEQEAIEETEKMLNVYATICEEL--LAIP----------------VIRGRK 201

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E + F    F                ++ S++    A  AATS                
Sbjct: 202 TEKEKFAGATFT--------------YTIESLMHDGKALQAATS---------------- 231

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                       + G +++   S TF   +G++ +VQ  S+G    R++ A+I    D +
Sbjct: 232 -----------HFLGDRFAEAFSITFLNREGREQHVQQTSWGF-TTRIIGAMIMVHGDNR 279

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P +VAP ++ ++ I  H +   D    +  R+  V   V  D   +Q G +F  ++
Sbjct: 280 GLVLPPNVAPTQVMIVPIAQHKEGVLDHAYGLKERVKTVA-RVDIDASDKQPGWKFNESE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G P+++ VG K +   +V +  R TG +  + + EV
Sbjct: 339 MKGIPIRLEVGPKDMEQDQVILVRRDTGEKVQVGISEV 376


>gi|332521716|ref|ZP_08398167.1| prolyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332042546|gb|EGI78747.1| prolyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 492

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 143/357 (40%), Gaps = 71/357 (19%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D+ GK  +    + ++ ++  PT E ++ + ++  I+SYR+LP    Q     R E+R R
Sbjct: 102 DNEGKLRVDPEAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKD---AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +R+ EFL ++   A+   +       + N ++ ++   F  +            P+ 
Sbjct: 162 L-FLRTAEFLWQEGHTAHETRVEALAEAETMNNVYATFAEEFMAI------------PVV 208

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             L  E    A   ET  +C +  M                                   
Sbjct: 209 QGLKSESERFAGAEET--YCIEALMQ---------------------------------- 232

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                           + ++ G   + G  ++      F   +GK  YV   S+G+ + R
Sbjct: 233 --------------DGKALQAGTSHFLGQNFAKAFDVKFTNKEGKQDYVWATSWGV-STR 277

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVF 380
           ++ A+I +  D +G++ P ++AP ++ ++ I   D+      D    I   L      V 
Sbjct: 278 LMGALIMTHSDDQGLVLPPNLAPNQVVIVPIYKTDEQLEQITDVVNGIMKDLRAKHITVK 337

Query: 381 WDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +D+    + G++FA  +L G PL++ +G++ + +  VE+  R    +E + LE +++
Sbjct: 338 FDNRTTHRPGAKFAQHELQGVPLRIAIGARDLENGTVELARRDILTKETVYLESLVD 394


>gi|212691282|ref|ZP_03299410.1| hypothetical protein BACDOR_00773 [Bacteroides dorei DSM 17855]
 gi|237712289|ref|ZP_04542770.1| threonyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237726428|ref|ZP_04556909.1| threonyl-tRNA synthetase [Bacteroides sp. D4]
 gi|212666514|gb|EEB27086.1| hypothetical protein BACDOR_00773 [Bacteroides dorei DSM 17855]
 gi|229434954|gb|EEO45031.1| threonyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453610|gb|EEO59331.1| threonyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
          Length = 646

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 167/440 (37%), Gaps = 70/440 (15%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L + T M+    KG+  WLP G      +   +R  Q R    E+  P + + +L++ SG
Sbjct: 252 LFMFTDMV---GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKNLYITSG 308

Query: 85  RYDSYGKEMLRLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            Y  YGK+  +     ++   Y   P +      I+++  +SY++LP    +     R E
Sbjct: 309 HYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRIAEFGTVCRYE 368

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R F   DA+ F   P+  K  + ++      +F  +  +++  +     
Sbjct: 369 QSGELHGLTRVRSFTQDDAHLF-CRPDQVKEEFLRVMDIINIVFKSMNFENVEAQ----- 422

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                    I L D    + +   D                       E W     A  +
Sbjct: 423 ---------ISLRDKVNREKYIGSD-----------------------ENWEKAEQAIIE 450

Query: 262 VHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGK 308
              EK   +  E    +  G +        +G  +  GT    Y+LP      + G+D +
Sbjct: 451 ACEEKGLTAKVEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYMGSDNQ 510

Query: 309 DHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDA 364
            H  V +     G+M R VA +IE +  GK  +W  PD VA   IS        +   + 
Sbjct: 511 KHRPVMIHRAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNEY 561

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+ A L K       DD  E+IG +    ++   P  +IVG K   + +V ++ +  G
Sbjct: 562 AEKVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVRKQGEG 621

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M +EE     +   SN
Sbjct: 622 DKGTMKIEEFGKNIAEEVSN 641


>gi|315223470|ref|ZP_07865327.1| proline--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314946643|gb|EFS98634.1| proline--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 492

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 149/350 (42%), Gaps = 65/350 (18%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK M+    + ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   
Sbjct: 105 GKLMVDPEAKLEEELIVRPTSEAIIWNTYKNWIQSYRDLPILINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E +     KM   Y                           +
Sbjct: 164 LRTAEFLWQEGHTAHATKEEAIEEAQKMMNVYA--------------------------D 197

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+             ++FM  P+         I  + S  E+    +A   D +     +
Sbjct: 198 FV-------------ENFMAVPV---------IKGVKSESER----FAGADDTY---CIE 228

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           +L ++     + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ A+I
Sbjct: 229 ALMQD----GKALQAGTSHFLGQNFAKAFDVKYVSKEGKQEYVWASSWGV-STRLMGALI 283

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDMGE 386
            +  D  G++ P  +AP ++ ++ I K  +Q+       + +   L K    V +DD   
Sbjct: 284 MTHSDDNGLVLPPKLAPIQVVIVPIYKGAEQLEKVHSHIQPLIEELKKHNISVKFDDRDT 343

Query: 387 QI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           Q  G +F   +L G P+++ VG + +  +  E+  R T  +E ++  +++
Sbjct: 344 QSPGFKFHEYELKGIPVRLAVGQRDIEHNTFEVARRDTLTKETVAGGQIV 393


>gi|225630645|ref|YP_002727436.1| threonyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|254783546|sp|C0R403|SYT_WOLWR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225592626|gb|ACN95645.1| threonyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 633

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 170/442 (38%), Gaps = 48/442 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 221 RNKDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRK 280

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 281 KLINNGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           SH +SYR+LP    +     R+E      G+MR R F   DA+ F +  E   +S    F
Sbjct: 341 SHTRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM--EEQVNSETIKF 398

Query: 179 VSYLR-IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              L+ ++  LG   I ++    P       E    A+    +            P E  
Sbjct: 399 CDLLKEVYSELGFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAVKEAGLSYELSPGEGA 458

Query: 238 DFD---DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
            +    + +  ++I   W         +        LPE  R+ A        FY G   
Sbjct: 459 FYGPKLEFVLKDAIGRSWQCGTLQVDFI--------LPE--RLGA--------FYIG--- 497

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                     ADG K H V +    +G       ++  ++ GK  +W   +AP +++++ 
Sbjct: 498 ----------ADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVW---LAPTQLAILT 544

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I            KI   L + G  V  D   E+I  +  +  L   P+  IVG   V+ 
Sbjct: 545 ITNE---ADGYATKISNVLKEQGVRVKTDLTNEKISYKIRLHSLNKVPILWIVGKNEVTS 601

Query: 414 SKVEIKHRLTGIREDMSLEEVI 435
             V +++  +  +E  SLE+ I
Sbjct: 602 KTVSVRNLGSERQESFSLEKAI 623


>gi|291515023|emb|CBK64233.1| prolyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 494

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/346 (19%), Positives = 145/346 (41%), Gaps = 79/346 (22%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIVRPTSETIIWNTYKNWIQSYRDLPILCNQWANVVRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     KM    +R++ +                                 
Sbjct: 177 HTAHATREEAVEEAEKM----IRVYRKF-------------------------------- 200

Query: 221 VFCSKDFMDFPI----PSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              ++++M  P+     S N  F   +D +++ ++++                       
Sbjct: 201 ---AEEWMSLPVVVGHKSPNERFAGAEDTLTIEALMQ----------------------- 234

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ A+I +  
Sbjct: 235 ----DGKALQSGTSHFLGQNFAKAFDVQYVNKEGKLEYVWATSWGV-STRLMGALIMAHS 289

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDMGE-QIG 389
           D  G++ P  +AP ++ ++ I    +   + C +   I A L   G  V  DD    + G
Sbjct: 290 DNNGLVLPPKLAPIQVVMVPIYKTPEQLAEICARFGAIAAELRDKGISVKIDDRDNVRPG 349

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA  +L G P+++ +G + + +  +E+  R T  ++ +S E ++
Sbjct: 350 FKFAEYELKGVPVRLAMGGRDLENGTIELVRRDTLEKQTISQEGLV 395


>gi|326317187|ref|YP_004234859.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374023|gb|ADX46292.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 639

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 153/388 (39%), Gaps = 50/388 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R+     G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEHSPGTVFWHPKGWTIWQGVEQYMRQVYRDNGYQEVKGPQILDKHLWEKTGHWDKYRE 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    ++++D A+   P +      IF   +KSYR+LP  + +     R+E      G+
Sbjct: 315 NMFTTESEKHDYAL--KPMNCPGHILIFNQGVKSYRDLPLRYGEFGQCHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   D + F    +  +   N  F S L +++   G   I  +  + P   IG +
Sbjct: 373 MRVRAFTQDDGHIFCTEDQIQQECIN--FTSLLQKVYKDFGFTDIIYKVATRPEKRIGSE 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S       D  E  +  S       + +   D+   +   +               +  
Sbjct: 431 ES------WDKAENALIES-------LKASGCDYQIAVGDGAF--------------YGP 463

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM 322
           KL  +L   +    R  + G I       S+P  + A + G DG+ H  + +    +G++
Sbjct: 464 KLEYTL---RDAIGRHWQCGTI---QVDPSMPERLGAEYVGEDGQRHRPIVLHRAIVGSL 517

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFW 381
                ++   H G   +W   +AP +++++NI  A D  CR+   K+   L   G  V  
Sbjct: 518 ERFIGILIEQHAGALPVW---LAPVQVAVLNITGAQDDYCREIAAKLQKALPNQGLRVEL 574

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           D   E+I  +     L   P  ++VG K
Sbjct: 575 DLRNEKITYKIREHSLQKLPYILVVGDK 602


>gi|146340273|ref|YP_001205321.1| putative threonine tRNA synthetase (fragment) [Bradyrhizobium sp.
           ORS278]
 gi|146193079|emb|CAL77090.1| putative threonine tRNA synthetase (fragment) [Bradyrhizobium sp.
           ORS278]
          Length = 409

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W P G      +   IR +  R G  E+  P L   DLW++SG ++ +G 
Sbjct: 18  IQEDAPGMVFWHPRGHALYRVLENFIRGKMRRLGYAEVRTPQLLPLDLWMQSGHWEKFGA 77

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M  L +  ++AM   P        IF  +++S+R LP  + +     RDE      G+M
Sbjct: 78  QMFALGE-GERAMALKPMSCPCHVQIFNRNLRSWRELPLRYAEFGSCHRDEPSGALHGLM 136

Query: 151 RSREFLMKDAYSF 163
           R+R F   DA+ F
Sbjct: 137 RTRGFEQDDAHVF 149


>gi|225076640|ref|ZP_03719839.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
 gi|224952046|gb|EEG33255.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
          Length = 643

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 261 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNVAGYKEVKTPQIMDKTFWEKSGHWENYKD 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 321 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 379

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 380 RVRGFVQDDAHIFCTEDQIVDEARAFNELLV---RIYKQFGFHDVAVKLSLRPEQRAGSD 436

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           E    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 437 EVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 496

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 497 RLNAEYVTENNDRARPVML-------------------------HRAILGSLE----RFI 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 528 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 580

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 581 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 616


>gi|329115958|ref|ZP_08244675.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906363|gb|EGE53277.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 648

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 173/429 (40%), Gaps = 47/429 (10%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P + S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPMASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 374 GLQRVREMTLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR---------LS 423

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 424 YR-----DPKDTHKYYDNDEM-----WENAQAMLKAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 523 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGIRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI-NYAS 439
            DD  E++  +   +     P Q+IVG K + D  V ++   +      S+EE + N  +
Sbjct: 578 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKAVNVRRYGSKATHTESIEEFVDNILA 637

Query: 440 HRFSNNRPV 448
                +RPV
Sbjct: 638 DIARKSRPV 646


>gi|228967672|ref|ZP_04128693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792048|gb|EEM39629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 645

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 506 ---TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|205374566|ref|ZP_03227362.1| threonyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 643

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 163/389 (41%), Gaps = 40/389 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ + G   +  P L S DL+  SG +D Y + M  +
Sbjct: 264 QGLPLWLPKGATVRRMIERYIVDKEEKLGYDHVYTPVLGSVDLYKTSGHWDHYQENMFPV 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I+++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNEELVLRPMNCPHHMMIYKNGIHSYRELPIRIAELGTMHRYEMSGALAGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    + ++    LK    R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKEEFKRVVRLVMEVYKDFDLKDYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +T+ +   D M      +  E  D  D+    +  E   A Y    DV   ++  +L 
Sbjct: 429 PEDTEKYFDDDQMWERAQSMLKEAMDELDVHYFEADGE--AAFYGPKLDV---QVKTALG 483

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE
Sbjct: 484 KEETLSTVQLD----FLLPERFDL----TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIE 535

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                KG  +P  +AP ++ +I +     V  D  +K+   L   G     D   E+IG 
Sbjct: 536 EY---KG-AFPTWLAPVQVQVIPVSP--DVHFDYAKKVQEELRSAGIRADLDSRDEKIGY 589

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   A +   P  ++VG   + +  V ++
Sbjct: 590 KIREAQMQKIPYMLVVGDNEIEEEAVNVR 618


>gi|332878705|ref|ZP_08446422.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683342|gb|EGJ56222.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 647

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 169/444 (38%), Gaps = 63/444 (14%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q   G
Sbjct: 230 YLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRND-KAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   +L+V SG +D YGK+  + +A  N+ +  +  P +     +I+ SH  
Sbjct: 289 YEQVVTPHIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPW 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +    L
Sbjct: 349 SYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDAEFKHVIDLVL 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG  +   +              + L D             D P     TD    
Sbjct: 408 YVFGSLGFDNFTAQ--------------VSLRDP------------DNPTKYIGTD---- 437

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT-- 292
                  E W     A  +   EK  + + E    +  G +        +G  +  GT  
Sbjct: 438 -------ENWAKAENAIINAAKEKGLNYVIETGEAAFYGPKLDFMVKDALGRSWQLGTIQ 490

Query: 293 -KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y+LP      +KGAD + H  V +     G+M    A++     G   +W +      
Sbjct: 491 VDYNLPERFDLWYKGADNEMHRPVMIHRAPFGSMERFVAILLEHTAGNFPLWLNPNQAIV 550

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +SL       +   +  +K+   L         D+  E +G +   A+    P  +IVG 
Sbjct: 551 LSL------SEKYENYAQKVLRLLENSDIRTLIDNRAETMGKKIREAETQKVPYMLIVGE 604

Query: 409 KFVSDSKVEIKHRLTGIREDMSLE 432
               +  V ++ R       MS+E
Sbjct: 605 NEEKEGTVSVRKRGGEDLGSMSVE 628


>gi|218899729|ref|YP_002448140.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228903093|ref|ZP_04067229.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228910399|ref|ZP_04074214.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|218543438|gb|ACK95832.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228849165|gb|EEM94004.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228856502|gb|EEN01026.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 645

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 506 ---TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|265751997|ref|ZP_06087790.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|263236789|gb|EEZ22259.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 646

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 167/440 (37%), Gaps = 70/440 (15%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L + T M+    KG+  WLP G      +   +R  Q R    E+  P + + +L++ SG
Sbjct: 252 LFMFTDMV---GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKNLYITSG 308

Query: 85  RYDSYGKEMLRLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            Y  YGK+  +     ++   Y   P +      I+++  +SY++LP    +     R E
Sbjct: 309 HYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRIAEFGTVCRYE 368

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R F   DA+ F   P+  K  + ++      +F  +  +++  +     
Sbjct: 369 QSGELHGLTRVRSFTQDDAHLF-CRPDQVKEEFLRVMDIINIVFKSMNFENVEAQ----- 422

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                    I L D    + +   D                       E W     A  +
Sbjct: 423 ---------ISLRDKVNREKYIGSD-----------------------ENWEKAEQAIIE 450

Query: 262 VHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGK 308
              EK   +  E    +  G +        +G  +  GT    Y+LP      + G+D +
Sbjct: 451 ACEEKGLTAKVEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYMGSDNQ 510

Query: 309 DHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDA 364
            H  V +     G+M R VA +IE +  GK  +W  PD VA   IS        +   + 
Sbjct: 511 KHRPVMIHRAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNEY 561

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+ A L K       DD  E+IG +    ++   P  +IVG K   + +V ++ +  G
Sbjct: 562 AEKVKAELRKYDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVRKQGEG 621

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M +EE     +   SN
Sbjct: 622 DKGTMKIEEFGKNLAEEVSN 641


>gi|323351205|ref|ZP_08086861.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322122429|gb|EFX94140.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 647

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 159/399 (39%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S  L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVGLYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616


>gi|325678420|ref|ZP_08158040.1| proline--tRNA ligase [Ruminococcus albus 8]
 gi|324109921|gb|EGC04117.1| proline--tRNA ligase [Ruminococcus albus 8]
          Length = 480

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 138/354 (38%), Gaps = 69/354 (19%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRS 152
           +L DR    +   PT E +  + + + + SYR+LP  + Q    +++    RP    +RS
Sbjct: 105 KLEDR----LCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVVRWEKTTRP---FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E +     +M   Y                               
Sbjct: 158 REFLWQEGHTIHETAEEAIEETERMLNCY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD      FC K+     +    TD D             A YA  + +H+        
Sbjct: 187 -AD------FCEKELAMPVVKGRKTDSDKFAGAE-------ATYAIEALMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++      F G D K  Y    S+G+   R++ A+I + 
Sbjct: 225 ------GKALQAGTSHYFGDGFARAFDIQFTGRDNKLSYPHQTSWGV-TTRLIGAIIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P +VAP +  ++ I+   +   +  +++  +L   G  V  DD  +  G +F
Sbjct: 278 GDDNGLVLPPAVAPIQAVIVPIQQFKEGVLEKAQEVCEQLKAAGIRVKVDDSEQSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           A  ++ G P+++ +G K + + +  I  R    +    L E++   + +    R
Sbjct: 338 AEYEMKGVPVRIELGPKDIENGQCVIVTRHDREKTFTPLTELVETVNAKLEAVR 391


>gi|319943475|ref|ZP_08017757.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319743290|gb|EFV95695.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 636

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 160/422 (37%), Gaps = 49/422 (11%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL     + H  ++  G+  W P G      +   IRE+  +
Sbjct: 231 YLHMLEE----AEKRDHRKLGKDLDLFHTQAEAPGMVFWHPRGWTIWQRIEQYIREKYQK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +   DLW  SG +D+Y KE +  ++   +     P +      +F + ++
Sbjct: 287 NGYQEVRCPQILDVDLWKRSGHWDNY-KENMFFSESEKREYAVKPMNCPGHVQLFNASLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F  T E  +          +
Sbjct: 346 SYRDLPLRYAEFGSCHRNEPSGALHGIMRVRGFTQDDGHIF-CTEEQVEAEVTAFHQQAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     + E    A+        + D     +P E       
Sbjct: 405 AVYRDFGFTDVSVKLALRPTQRLGTDEAWDRAENALRAALSACDVAWEELPGEG------ 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
                      A Y    + H   L DS+        R  +VG I Y      +P  + A
Sbjct: 459 -----------AFYGPKIEYH---LKDSI-------GRAWQVGTIQY---DPMMPERLDA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   + +    +G+M     ++   H G    W   +AP +++++ +     
Sbjct: 495 EYVAEDNSRRRPIMLHRAIVGSMERFIGMLIEHHAGAMPTW---LAPVQVAVLTVT---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  E I  RL K G  V  D  G++IG +     L   P  V+VG K      + ++
Sbjct: 549 TAADYAEDIRQRLIKQGFRVISDLRGDKIGYKIREHSLQKIPYLVVVGEKDRQAGTLAVR 608

Query: 420 HR 421
            R
Sbjct: 609 AR 610


>gi|228941754|ref|ZP_04104301.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974678|ref|ZP_04135244.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981272|ref|ZP_04141572.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228778472|gb|EEM26739.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785081|gb|EEM33094.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817966|gb|EEM64044.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942359|gb|AEA18255.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 645

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 506 ---TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|213963363|ref|ZP_03391619.1| threonyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213954031|gb|EEB65357.1| threonyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 647

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 155/413 (37%), Gaps = 61/413 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + + A +R+ Q + G  ++  P +   +L+V SG +D YGK+  + 
Sbjct: 260 QGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTPHIGHKNLYVTSGHWDKYGKDSFQP 319

Query: 96  LADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +A  N+ +  +  P +     +I+ SH  SY++LP  F +    +R E      G+ R R
Sbjct: 320 IATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVR 379

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE     +  +    L +F  LG  +   +              + L
Sbjct: 380 CFTQDDAHIF-CTPEQLDDEFKHVIDLVLYVFGSLGFDNFTAQ--------------VSL 424

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D      +   D                       E W     A  +   EK  + + E
Sbjct: 425 RDPENLSKYIGSD-----------------------ENWAKAENAIINAAKEKGLNYVIE 461

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +KGAD + H  V +     
Sbjct: 462 TGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFDLWYKGADNEMHRPVMIHRAPF 521

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+M    A++     G   +W +      +SL       +   +  +K+ + L       
Sbjct: 522 GSMERFVAILLEHTAGNFPLWLNPNQAIILSL------SEKYENYAQKVLSLLENSDIRT 575

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             D+  E +G +   A+    P  +IVG     +  V ++ R       MS+E
Sbjct: 576 LIDNRAETMGKKIREAETQKIPYMLIVGENEEKEGTVSVRKRGGEDLGSMSVE 628


>gi|23099609|ref|NP_693075.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
 gi|73919811|sp|Q8EPF3|SYT_OCEIH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22777839|dbj|BAC14110.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
          Length = 646

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 175/416 (42%), Gaps = 40/416 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G     NV   I + + R G   +  P L + +L+  SG +D Y  +M   
Sbjct: 263 QGLPLWLPKGATIRRNVERYIVDLEERLGYSHVYTPVLGNVELYKTSGHWDHYQDDMFPT 322

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      +F++ + SYRNLP    ++    R E+     G+ R R  
Sbjct: 323 MEMDNEELVLRPMNCPHHMMVFKNQLWSYRNLPVRIAELGTMHRHEMSGALAGLQRVRAM 382

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++      ++   G+     R         LS+      D
Sbjct: 383 TLNDAHIF-ARPDQLKEEFIRVVELVQHVYKDFGIDDYYFR---------LSYR-----D 427

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             + + +   D M     +   +  + ++L  +  E   A Y    DV   ++  +L ++
Sbjct: 428 PEDKEKYVDNDEMWEKAQAMLKETMEDMNLEYVEAEGEAAFYGPKLDV---QVKTALGKD 484

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F+   ++ L    T+ G DG  H   +   G+ +   R VA +IE  
Sbjct: 485 ETLSTIQLD----FHLPERFDL----TYIGEDGNQHRPVVIHRGVVSTMERFVAFLIEEY 536

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I  +++AH    +D  EK+  +    G  V  D+  E+IG 
Sbjct: 537 ---KG-AFPTWLAPVQVKIIPVSLQAHLDYAKDIEEKLRYQ----GVRVELDERDEKIGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   A     P  +++G K +  + V  +       E +  ++ +N       N +
Sbjct: 589 KIREAQTQKVPFALVLGDKEMESNSVNYRRYGEQDTETLEFDQFLNLIKEEVDNKK 644


>gi|120554978|ref|YP_959329.1| threonyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|166223352|sp|A1U2C3|SYT_MARAV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120324827|gb|ABM19142.1| Ser-tRNA(Thr) hydrolase [Marinobacter aquaeolei VT8]
          Length = 641

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 173/423 (40%), Gaps = 67/423 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  + G+ H  + + G+  W P G      V   +R +Q++ G  E+  P 
Sbjct: 237 EAEKRDHRKIGKKLGLFHMQEEAPGMVFWHPDGWSLYQEVEQYMRAQQHKHGYKEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + S  LW +SG +D +  +M    ++++D A+   P +      +F   +KSY++LP   
Sbjct: 297 VVSRTLWEKSGHWDKFKDDMFTTESEKHDYAI--KPMNCPCHVQVFNQGLKSYKDLPLRL 354

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGL 190
            +     R+E      G+MR R F   DA+ F    E +       F++ L  I+   G 
Sbjct: 355 AEFGSCHRNEASGALHGLMRVRGFTQDDAHIF--CEEDAIQEEVSAFIAMLHEIYADFGF 412

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIV 249
             I  +  + P     S E    ++    Q   +++ +D+  +P E   +   I  +   
Sbjct: 413 SEILYKLSTRPEKRVGSDEVWDKSEAALEQAL-NREGVDWELLPGEGAFYGPKIEFS--- 468

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKG 304
                            L D L             G ++  GT    +S+P  + A +  
Sbjct: 469 -----------------LKDCL-------------GRVWQCGTIQVDFSMPGRLGAQYVA 498

Query: 305 ADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + +       H   +GS+     R +  +IE  ++G    W   +AP +++++NI    
Sbjct: 499 DNSERKTPVMLHRAVLGSF----ERFIGILIE-EYEGAFPTW---LAPTQVAVLNITDKQ 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              RD C+ +  +L   G  V  D   E+IG +     L   P  V+VG K + ++ V +
Sbjct: 551 ---RDYCQNLAKKLDSSGYRVNADLRNEKIGFKIREHTLNKVPYLVVVGDKEIENNAVAV 607

Query: 419 KHR 421
           + R
Sbjct: 608 RTR 610


>gi|284037110|ref|YP_003387040.1| threonyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816403|gb|ADB38241.1| threonyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 647

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 170/412 (41%), Gaps = 53/412 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G    + +   +R+ Q R G   +  P + S  L+V SG ++ YG++    +
Sbjct: 268 GLPLWLPKGTVLRERLENFLRKAQVRAGYSPVVTPHIGSKQLYVTSGHWEKYGEDSFQPI 327

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           R  D N++ ++  P +     +I+++  +SYR+LP    +    +R E      G+ R R
Sbjct: 328 RTPDPNEEFLL-KPMNCPHHCEIYKTKPRSYRDLPLRLAEFGTVYRYEQSGELHGLTRVR 386

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + K+    L +F+ LG               D S +  + 
Sbjct: 387 GFTQDDAHIF-CRPDQVKEEFMKVIDLVLYVFNTLGF-------------SDYSAQISLR 432

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               +T+   S D  +    S   +      L ++ E   A +      +  KL D +  
Sbjct: 433 DPENKTKYIGSDDLWE-KAESAIIEAAAEKGLPTVTELGEAAF------YGPKL-DFMVR 484

Query: 274 NKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAM-RVVA 326
           +         +G  +  GT    Y+LP      + GAD + H  V +     G+M R +A
Sbjct: 485 DA--------IGRKWQLGTIQVDYNLPNRFELEYIGADNQKHRPVMIHRAPFGSMERFIA 536

Query: 327 AVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            +IE+S  G   +W  PD +A   IS        +   D    ++  L +     F D  
Sbjct: 537 ILIENS-GGNFPLWLSPDQIAILPIS--------EKYEDYANDLFFSLQENDIRGFVDLR 587

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            E+IG +   A++   P  +IVG K  ++  V ++ +  G    M + + I 
Sbjct: 588 DEKIGRKIRDAEVNKVPYMLIVGEKEAAEGTVSVRRKGQGDLGSMPIADFIQ 639


>gi|325263795|ref|ZP_08130528.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324030833|gb|EGB92115.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 641

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 106/459 (23%), Positives = 177/459 (38%), Gaps = 74/459 (16%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK---------------GIYSWLPLGQKALDNVNAIIRE 59
           P+ AE+  +  ML       H K               G   +LP G    + +    RE
Sbjct: 222 PKKAELDEYLTMLEEAKKRDHRKLGKELGLFMMRDEGPGFPFFLPKGMVLKNTLLDYWRE 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIF 118
             +R G +E++ P + S  LW  SG +D Y   M   + D  D A+   P +      ++
Sbjct: 282 IHSRNGYVEIATPIMLSRHLWETSGHWDHYKDNMYTTVIDEEDFAI--KPMNCPGGILVY 339

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S  +SYR+LP    ++ L  R E   +  G+MR R F   DA+ F + PE  +     +
Sbjct: 340 QSEPRSYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MMPEQIRDEIKDV 398

Query: 178 FVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 ++   G K    +  R E   +G D   E    A  G      + D ++ P   
Sbjct: 399 ARLIDEVYSLFGFKYHVELSTRPEDS-MGSDEDWEMATEALRG------ALDDLELPYVV 451

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-- 292
              D               A Y    D H E   DS             +G  +  GT  
Sbjct: 452 NEGD--------------GAFYGPKIDFHLE---DS-------------IGRTWQCGTIQ 481

Query: 293 -KYSLPM--SATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPF 347
             + LP+     + GADG+ H  + +     G++ R +  +IE         +P  +AP 
Sbjct: 482 LDFQLPLRFDLEYTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGA----FPTWLAPV 537

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++ ++ I   D+  +   +K+   L+K G     D   E+IG +   A +   P  ++VG
Sbjct: 538 QVKVLPIS--DKYIK-YGKKVQDTLNKAGIRADIDMRAEKIGYKIREAQMQKIPYMLVVG 594

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +K   D  V ++ R  G     S++E I   +   +  +
Sbjct: 595 AKEEEDRLVSVRSRFAGDEGQKSMDEFIASITSEIAGKK 633


>gi|15643503|ref|NP_228549.1| threonyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|8928373|sp|Q9WZJ9|SYT_THEMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4981265|gb|AAD35821.1|AE001744_11 threonyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 640

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 157/391 (40%), Gaps = 41/391 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           +++ G+  +LP G   L+ +    RE     G  E+  P + +  LW  SG +D Y + M
Sbjct: 256 EYAPGMPFFLPKGVVVLNELMKFSRELHRERGYQEIFTPLIMNEQLWKISGHWDHYAENM 315

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               +++++     P +      +++S   SYR+LP  F++     R E      G+MR 
Sbjct: 316 Y-FIEKDEERYAVKPMNCPGHILVYKSRTVSYRDLPLRFFEFGRVHRYERSGVLHGLMRV 374

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD-LSHEFI 211
           R F   DA+ F  TP+  +     +      I+ + G      R E   +  D +  E I
Sbjct: 375 RSFTQDDAHIF-CTPDQIEEEILGVLDLINTIYSQFGFT---YRVELSTMPEDHMGDEAI 430

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               T   +    +  + + +      F                Y    D H   + DS+
Sbjct: 431 WEKATTALKNALERAGLSYKVNEGEGAF----------------YGPKIDFH---IRDSI 471

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIE 330
               + +   ++    F    K+++    T+ G D K+H   M    I G++     ++ 
Sbjct: 472 GREWQCATIQLD----FMMPEKFNV----TYIGPDNKEHRAVMIHRAIYGSLERFFGILI 523

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
               G    +P  +AP ++++I I        D  EK+  R+S+ G  VF+D+  E +G 
Sbjct: 524 EHFAGA---FPTWLAPIQVAVIPISEKHN---DGAEKVARRISQEGFRVFFDNRRETLGY 577

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   A     P  +I+G K +   K+ ++ R
Sbjct: 578 RIRQAQTQKIPYMIIIGDKELESGKISVRTR 608


>gi|240127689|ref|ZP_04740350.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 648

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 152/398 (38%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 266 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 326 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 384

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 385 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 441

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVH 263
           +    A+ G  E    C  ++ +  +P E   +   I     +++   W         V 
Sbjct: 442 DVWDKAEQGLREALTACGVEWGE--LPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVL 499

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+L           AR + +                         H   +GS      R
Sbjct: 500 PERLDAEYVTENNDRARPVML-------------------------HRAILGSLE----R 530

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L         D 
Sbjct: 531 FIGILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAADFRAELDL 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 584 RNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 621


>gi|324993844|gb|EGC25763.1| threonine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324994835|gb|EGC26748.1| threonine--tRNA ligase [Streptococcus sanguinis SK678]
 gi|325687276|gb|EGD29298.1| threonine--tRNA ligase [Streptococcus sanguinis SK72]
 gi|325696135|gb|EGD38026.1| threonine--tRNA ligase [Streptococcus sanguinis SK160]
 gi|327474719|gb|EGF20124.1| threonine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 647

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 159/399 (39%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATVRRELERYIVDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +++ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYADFNLTEYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     +  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEAHI--DYAWQVAKKLRDKGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K   D  V ++
Sbjct: 578 VDERNEKMQYKIRASQTSKIPYQLIVGDKEAEDGTVNVR 616


>gi|167771272|ref|ZP_02443325.1| hypothetical protein ANACOL_02630 [Anaerotruncus colihominis DSM
           17241]
 gi|167666523|gb|EDS10653.1| hypothetical protein ANACOL_02630 [Anaerotruncus colihominis DSM
           17241]
          Length = 478

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  +S     TF+G D K  Y    S+G+ + R++ A+I +  D  G+
Sbjct: 225 GKALQSGTSHYFGDGFSRAFGITFQGRDNKPQYPHQTSWGM-STRIIGAIIMTHGDNDGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P ++AP ++ ++ I  H +   +A   +  RL  V C V  DD     G +FA  ++ 
Sbjct: 284 VLPPAIAPVQVVVLPIAQHKEGVLEAARAVTERLRGV-CRVKIDDSDNSAGWKFAEYEMK 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ +G + ++  +  +  R    +  ++L+E+
Sbjct: 343 GVPLRLEMGPRDIAAGQCVVVRRDNREKTVVALDEL 378


>gi|229552552|ref|ZP_04441277.1| threonine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258539925|ref|YP_003174424.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|229314104|gb|EEN80077.1| threonine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257151601|emb|CAR90573.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 657

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 260 GLPYWMPNGATIRRVIERYIIDKEIADGYEHVYTPVLANLDLYKTSGHWDHYREDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQEEFKKILRLIMDVYEDFNITDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 425 PKNTEKYFDDDEMWTRSQSMLKGAMDDLHLDYYEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFNL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP +  LI +  ++ +  D   +I  ++   G  V  DD  E++G +  
Sbjct: 534 KGAFPTW---LAPTQAVLIPV--NNDLHLDYVNRIKRQMQAAGLRVKVDDRNEKMGYKIR 588

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  V+VG K ++D+ V ++
Sbjct: 589 EAQTKKIPYTVVVGDKELNDAAVSVR 614


>gi|55820651|ref|YP_139093.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822542|ref|YP_140983.1| threonyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|116627458|ref|YP_820077.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|73919831|sp|Q5M0T3|SYT_STRT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919832|sp|Q5M5B9|SYT_STRT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122267944|sp|Q03LP1|SYT_STRTD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|55736636|gb|AAV60278.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus LMG 18311]
 gi|55738527|gb|AAV62168.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus CNRZ1066]
 gi|116100735|gb|ABJ65881.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Streptococcus
           thermophilus LMD-9]
 gi|312277977|gb|ADQ62634.1| Threonyl-tRNA synthetase ThrS [Streptococcus thermophilus ND03]
          Length = 648

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 159/399 (39%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEEEFKKILQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
              +   D  +   +   D M      EN         DD+       E   A Y    D
Sbjct: 422 ---LSYRDPADKHKYFDNDEM-----WENAQRMLKAAVDDMGVEYYEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAE 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMKDGTVNVR 616


>gi|11499201|ref|NP_070438.1| prolyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|2648947|gb|AAB89637.1| prolyl-tRNA synthetase (proS) [Archaeoglobus fulgidus DSM 4304]
          Length = 575

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/406 (20%), Positives = 153/406 (37%), Gaps = 72/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+Y W P G K    V + +RE  +R    E+  P L    +L  E      +  E+  
Sbjct: 134 KGLYVWFPFGFKIRQLVYSKLREIMDREHD-EVYFPALIPETELGKEGEHIKGFEDEVYW 192

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  M  +FR  ++++ +LP   YQI   FR E +    ++R
Sbjct: 193 ITHGGLTPLDVKLALRPTSETAMYPMFRLWVRNHADLPLKVYQIVNTFRYETKHTRPLIR 252

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++     E +     K    Y   +  L +  + +R              
Sbjct: 253 LREITSFKEAHTVHKDFEEAAEHVKKAIGFYKEFYDFLAIPYMVIR-------------- 298

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP  +    FD I+                           
Sbjct: 299 -------------RPEWDKFPGAAYTIAFDTIMP-------------------------- 319

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R +++G + +    ++      ++  +G+ +Y     YGI   R +AA+I 
Sbjct: 320 -------DGRTLQIGTVHHLADNFARTFDIKYEAPNGEHYYAHQTCYGISE-RCIAALIS 371

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D  G++ P  VAP +I +I I  K  ++   +AC K+  +L      V  D+  ++ 
Sbjct: 372 VHGDDLGLVLPFEVAPVQIVIIPILYKGKEEAVMEACRKLAEKLK--AFRVVLDEGEDRP 429

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G+++   +L G P++  +G +        +  R    + ++ L+EV
Sbjct: 430 GAKYYKWELKGVPIRFEIGPRDAEKGVAVVSFRDEKRKFEVPLDEV 475


>gi|289434839|ref|YP_003464711.1| hypothetical protein lse_1474 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171083|emb|CBH27625.1| thrS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 640

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 186/445 (41%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDD 241
            ++    +K    R         LS+      D   T+ +   D M D       +  D+
Sbjct: 406 EVYKDFDIKDYSFR---------LSYR-----DPKNTEKYFDDDAMWDKAQAMLKSAMDE 451

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 452 MGMDYFEADGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ LI + A   
Sbjct: 501 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMELIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++
Sbjct: 557 L--DYAKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
              +   E M L+  I+      S 
Sbjct: 615 RYGSKDSETMELDTFISQVVQEVSK 639


>gi|199599516|ref|ZP_03212905.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258508749|ref|YP_003171500.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199589585|gb|EDY97702.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257148676|emb|CAR87649.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|259650055|dbj|BAI42217.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 657

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 260 GLPYWMPNGATIRRVIERYIIDKEIADGYEHVYTPVLANLDLYKTSGHWDHYREDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQEEFKKILRLIMDVYEDFNITDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 425 PKNTEKYFDDDEMWTRSQSMLKGAMDDLHLDYYEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFNL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP +  LI +  ++ +  D   +I  ++   G  V  DD  E++G +  
Sbjct: 534 KGAFPTW---LAPTQAVLIPV--NNDLHLDYVNRIKRQMQAAGLRVKVDDRNEKMGYKIR 588

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  V+VG K ++D+ V ++
Sbjct: 589 EAQTKKIPYTVVVGDKELNDAAVSVR 614


>gi|268686074|ref|ZP_06152936.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626358|gb|EEZ58758.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 637

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 149/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +D+Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + +R    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVRLSLRPEKRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L         D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAAKLQAADFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q+++G K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRK 610


>gi|313637683|gb|EFS03062.1| threonyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 483

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 186/445 (41%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 71  KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 129

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 130 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 189

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 190 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 248

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDD 241
            ++    +K    R         LS+      D   T+ +   D M D       +  D+
Sbjct: 249 EVYKDFDIKDYSFR---------LSYR-----DPKNTEKYFDDDAMWDKAQAMLKSAMDE 294

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 295 MGMDYFEADGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 343

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ LI + A   
Sbjct: 344 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMELIPVNADAH 399

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++
Sbjct: 400 L--DYAKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVR 457

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
              +   E M L+  I+      S 
Sbjct: 458 RYGSKDSETMELDTFISQVVQEVSK 482


>gi|85057755|ref|YP_456671.1| prolyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|114152170|sp|Q2NJ01|SYP_AYWBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84789860|gb|ABC65592.1| prolyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 474

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/417 (19%), Positives = 168/417 (40%), Gaps = 72/417 (17%)

Query: 25  LMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           + L+  +I +  +KG   +LP G    +N+   +     +TG   +  P +    L+  E
Sbjct: 24  ICLKAELIAYSEAKGFIIYLPYGYALWENIQKHLNCTLQKTGHQNVYFPLVFPEKLFHKE 83

Query: 83  SGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-- 136
                 +  E   +     K     ++  PT E + +  +   I SYR+LP  + Q    
Sbjct: 84  KEHIQGFSPEAAMITTTGKKNLSEKLVIRPTSEILFSQYYSKTITSYRDLPKLYNQWCNV 143

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           +++    +P    +R +EFL ++ ++   T + +     +  +S L I+ +L        
Sbjct: 144 VRWEKTTKP---FLRGKEFLWQEGHTVHATEQEAM----QQTLSILDIYQKL-------- 188

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G DL     V     ET+ F                   +I+           Y
Sbjct: 189 ------GKDLLALPFVCGKKTETEKFAGA----------------LIT-----------Y 215

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +  + +H+               + ++ G   Y G  ++      F+  D +  Y    S
Sbjct: 216 SIEALMHD--------------GQALQAGTSHYLGIIFAKSFQIQFQDCDNQKKYAHQTS 261

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +G+ + R++ A+I    D +G++ P  VAP +I +I ++  D+  +   E +++ L K  
Sbjct: 262 WGV-STRLIGALIMVHSDDEGLVLPPYVAPMQIVIIPLQTQDESVKQVSENLFSILQK-N 319

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             V  D   +  G +F+  +L G PL++ +G + + + +V I  R    ++++ +++
Sbjct: 320 YRVHLDLQDKTAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKIKD 376


>gi|166033170|ref|ZP_02235999.1| hypothetical protein DORFOR_02892 [Dorea formicigenerans ATCC
           27755]
 gi|166027527|gb|EDR46284.1| hypothetical protein DORFOR_02892 [Dorea formicigenerans ATCC
           27755]
          Length = 480

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 166/407 (40%), Gaps = 70/407 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG  ++LP G    + + A +      TG   + +P L   A L  E+   + +  E+  
Sbjct: 38  KGCLNYLPNGFAIWELIKADLDRRFKETGVENVYLPCLIPEALLEKEADHIEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     +R  +     PT E +  D++   ++SYR+LP  + Q    L++    RP    
Sbjct: 98  VTHGGMERLQERFCVRPTSETLFCDLWARTVQSYRDLPKVWNQWCSVLRWEKTTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +RSREFL ++ ++   T E ++    +M+  Y + F++  + ++P  A     G    HE
Sbjct: 155 LRSREFLWQEGHTIHATYEEAEQRTIQMWQIY-KDFYKETM-AVPFVA-----GRKAEHE 207

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A                          D  ++ +++    A  +ATS         
Sbjct: 208 KFAGA-------------------------QDTYTVEALMHDGKALQSATS--------- 233

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                              +FG+ +       +   D +   V   S+G+ + R + A+I
Sbjct: 234 ------------------HFFGSGFPEAFGIQYIDKDNQLKNVYETSWGL-STRSIGALI 274

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               D  G++ P  +AP +  +I I  H +   +   ++   L K G  V  DD  +  G
Sbjct: 275 MVHGDDDGLVIPPHLAPVECRVIPIAQHKEGVLEKANELLDELKKAGYRVKIDDSEKSPG 334

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +F+  ++LG P ++ +G K + +++V +  R T  +  +SL+E+  
Sbjct: 335 WKFSEQEILGIPTRIEIGPKDIENNQVVVVRRDTREKIVVSLDEITT 381


>gi|323704478|ref|ZP_08116056.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535940|gb|EGB25713.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 634

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 163/413 (39%), Gaps = 51/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHNEGPGFPFFHPKGMILRNILEDFWRKEHAKRGYQEIKTPIILNEELWHRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D+     P +      ++ S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTKIDDEDYAIKPMNCPGALLVYNSTMHSYRDLPLRLCELGLVHRHELSGALHGLM 372

Query: 151 RSREFLMKDAYSFDLTP---EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TP   E       K+   + +IF       +  R E+  IG D  
Sbjct: 373 RVRSFTQDDAHLF-MTPDQVESEILGVIKLIDYFYKIFGFEYFVELSTRPENS-IGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEK 266
            E   LA     +                    + I LN  V +   A Y    D H   
Sbjct: 431 WE---LATNALIKAM------------------EHIGLNYKVNEGDGAFYGPKIDFH--- 466

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
           L DS+        R  + G I      + +P   +  + G DG+ H  V +     G++ 
Sbjct: 467 LKDSI-------GRTWQCGTI---QLDFQMPERFNCEYVGDDGEKHRPVMLHRVVFGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A++  +  G    +P  +AP ++ ++ I           + I+ RL +    V  DD
Sbjct: 517 RFIAILTENFAGA---FPTWLAPVQVKILPISDKHLAY---AQNIHERLLENDIRVELDD 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E+IG +   A +   P  +I+G K V    V ++ R  G     SL+E ++
Sbjct: 571 RNEKIGYKIREAQMQKIPYMLILGDKEVEAGNVSVRSRKEGDLGSKSLQEFLS 623


>gi|114152886|sp|O28664|SYP_ARCFU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 471

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/406 (20%), Positives = 154/406 (37%), Gaps = 72/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+Y W P G K    V + +RE  +R    E+  P L    +L  E      +  E+  
Sbjct: 30  KGLYVWFPFGFKIRQLVYSKLREIMDREHD-EVYFPALIPETELGKEGEHIKGFEDEVYW 88

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  M  +FR  ++++ +LP   YQI   FR E +    ++R
Sbjct: 89  ITHGGLTPLDVKLALRPTSETAMYPMFRLWVRNHADLPLKVYQIVNTFRYETKHTRPLIR 148

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++     E +     K    Y   +  L +  + +R              
Sbjct: 149 LREITSFKEAHTVHKDFEEAAEHVKKAIGFYKEFYDFLAIPYMVIR-------------- 194

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP  +    FD I+                           
Sbjct: 195 -------------RPEWDKFPGAAYTIAFDTIMP-------------------------- 215

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R +++G + +    ++      ++  +G+ +Y     YGI + R +AA+I 
Sbjct: 216 -------DGRTLQIGTVHHLADNFARTFDIKYEAPNGEHYYAHQTCYGI-SERCIAALIS 267

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D  G++ P  VAP +I +I I  K  ++   +AC K+  +L      V  D+  ++ 
Sbjct: 268 VHGDDLGLVLPFEVAPVQIVIIPILYKGKEEAVMEACRKLAEKLK--AFRVVLDEGEDRP 325

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G+++   +L G P++  +G +        +  R    + ++ L+EV
Sbjct: 326 GAKYYKWELKGVPIRFEIGPRDAEKGVAVVSFRDEKRKFEVPLDEV 371


>gi|254804601|ref|YP_003082822.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668143|emb|CBA04768.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 637

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 149/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVAVKLSLRPEQRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           E    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 431 EVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|75812508|ref|YP_320127.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
 gi|75705264|gb|ABA24938.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
          Length = 614

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 170/420 (40%), Gaps = 50/420 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+    +G   +  P + + DLW  SG +D Y + M    
Sbjct: 237 GLVFWHPKGAIIRYIIEDYWRKSHLESGYQLLYTPHIANLDLWKTSGHFDFYQENMFDSM 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  ++A    P +       ++  + SYR LP  + ++   +R E      G+MR R F 
Sbjct: 297 DVENQAYQIKPMNCPFHVLTYKHQLHSYRELPLRWAELGTVYRYERSGALHGLMRVRGFT 356

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L  + +      + ++  +I    G K+  +   + P     + E   LA +
Sbjct: 357 QDDAHVFCLPNQIADEILGVLNLTE-QILSDFGFKNYEVNLSTRPEKSVGNDEVWELATS 415

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
              Q   +K +                  N IV E   A Y    D+   K+ D++    
Sbjct: 416 ALRQALNTKGW------------------NYIVDEGGGAFYGPKIDI---KIQDAIGRLW 454

Query: 276 RVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESS 332
           + S   ++          ++LP      +   DG      M    I G++     ++  +
Sbjct: 455 QCSTIQVD----------FNLPERFDMEYIAVDGSRQRPIMIHRAIFGSLERFFGILIEN 504

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + G   +W   +AP ++ L+ +   D+V R+  + +   L K G  V  D  GE++G Q 
Sbjct: 505 YSGDFPLW---LAPVQLRLLPVS--DEV-REYAQLVVISLKKAGIRVETDSSGERLGKQI 558

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS---NNRPVL 449
             A+L   P+  +VG K V +  + ++ R +G    ++++E++    HR     N++ VL
Sbjct: 559 RTAELEKIPVVAVVGKKEVENQNLSVRTRQSGDLGVLNMDEIL----HRLQDAINSKSVL 614


>gi|313633110|gb|EFS00008.1| threonyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 485

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 186/445 (41%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 73  KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 131

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 132 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 191

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 192 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 250

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDD 241
            ++    +K    R         LS+      D   T+ +   D M D       +  D+
Sbjct: 251 EVYKDFDIKDYSFR---------LSYR-----DPKNTEKYFDDDAMWDKAQAMLKSAMDE 296

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 297 MGMDYFEADGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 345

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ LI + A   
Sbjct: 346 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMELIPVNADAH 401

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++
Sbjct: 402 L--DYAKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVR 459

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
              +   E M L+  I+      S 
Sbjct: 460 RYGSKDSETMELDTFISQVVQEVSK 484


>gi|228993303|ref|ZP_04153219.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228766371|gb|EEM15014.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 643

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 227 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 286

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 287 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 346

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 347 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 405

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M     S   +
Sbjct: 406 NLTLEVYKDFGLENYSFR---------LSYR-----DPEDTKKYYADDEMWEKAQSMLKE 451

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L     E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 452 AMDEMGLEYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 503

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 504 ---TYVGEDGKPHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 556

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 557 P--QVHLDYAKKVQEDLQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENG 614

Query: 416 VEIK 419
           V ++
Sbjct: 615 VNVR 618


>gi|120611523|ref|YP_971201.1| threonyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|166223312|sp|A1TR39|SYT_ACIAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120589987|gb|ABM33427.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidovorax
           citrulli AAC00-1]
          Length = 639

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 153/388 (39%), Gaps = 50/388 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R+     G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEHSPGTVFWHPKGWTIWQGVEQYMRQVYRDNGYQEVKGPQILDKHLWEKTGHWDKYRE 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    ++++D A+   P +      IF   +KSYR+LP  + +     R+E      G+
Sbjct: 315 NMFTTESEKHDYAL--KPMNCPGHILIFNQGVKSYRDLPLRYGEFGQCHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   D + F    +  +   N  F + L +++   G   I  +  + P   IG +
Sbjct: 373 MRVRAFTQDDGHIFCTEDQIQQECIN--FTALLQKVYKDFGFTDIIYKVATRPEKRIGSE 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S       D  E  +  S       + +   D+   +   +               +  
Sbjct: 431 ES------WDKAENALIES-------LKASGCDYQIAVGDGAF--------------YGP 463

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM 322
           KL  +L   +    R  + G I       S+P  + A + G DG+ H  + +    +G++
Sbjct: 464 KLEYTL---RDAIGRHWQCGTI---QVDPSMPERLGAEYVGEDGQRHRPIVLHRAIVGSL 517

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFW 381
                ++   H G   +W   +AP +++++NI  A D  CR+   K+   L   G  V  
Sbjct: 518 ERFIGILIEQHAGALPVW---LAPVQVAVLNITGAQDDYCREIAAKLQKALPNQGLRVEL 574

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           D   E+I  +     L   P  ++VG K
Sbjct: 575 DLRNEKITYKIREHSLQKLPYILVVGDK 602


>gi|322389968|ref|ZP_08063508.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321143404|gb|EFX38842.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 647

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 167/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R         LS
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEEEFKKILQLIIDVYEDFNLTDYRFR---------LS 423

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
           +      D  +   +   D M      EN         DD+       E   A Y    D
Sbjct: 424 YR-----DPEDKHKYFDNDEM-----WENAQRMLKAAVDDMGVEYYEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D+  E++  +   +     P Q+IVG K + D  V ++       E MS++  +
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVRRYGQKETETMSVDAFV 632


>gi|312868227|ref|ZP_07728427.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311095972|gb|EFQ54216.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 647

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 167/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R         LS
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEEEFKKILQLIIDVYEDFNLTDYRFR---------LS 423

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
           +      D  +   +   D M      EN         DD+       E   A Y    D
Sbjct: 424 YR-----DPEDKHKYFDNDEM-----WENAQRMLKAAVDDMGVEYYEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D+  E++  +   +     P Q+IVG K + D  V ++       E MS++  +
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVRRYGQKETETMSVDAFV 632


>gi|228999356|ref|ZP_04158935.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229006911|ref|ZP_04164541.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228754311|gb|EEM03726.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228760301|gb|EEM09268.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 643

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 227 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 286

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 287 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 346

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 347 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 405

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M     S   +
Sbjct: 406 NLTLEVYKDFGLENYSFR---------LSYR-----DPEDTKKYYADDEMWEKAQSMLKE 451

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L     E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 452 AMDEMGLEYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 503

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 504 ---TYVGEDGKPHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 556

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 557 P--QVHLDYAKKVQEDLQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENG 614

Query: 416 VEIK 419
           V ++
Sbjct: 615 VNVR 618


>gi|282881717|ref|ZP_06290380.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281304476|gb|EFA96573.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 655

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 156/418 (37%), Gaps = 65/418 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R  Q R G  E+  P + S +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTELRLRLQDMLRNIQRRYGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     ++F    +SY++LP    +    +R E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVFAYKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K+ + ++      +F      +   +              I L
Sbjct: 383 SFTQDDAHIF-CRPDQVKNEFLRVMDIIQAVFKIFNFDNFEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W     A  D   EK  D+  E
Sbjct: 428 RDPKDKEKYIGSD-----------------------EVWAESEQAIIDACKEKGLDAKVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLPMSATFKGAD---GKDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP     +  D    K   V +     
Sbjct: 465 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPQRFKLEYTDEDNSKRTPVMVHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS    + ++   R   ++  A+  +   
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS----EKYNAYARQVAKQFAAQQVRATI 580

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               DD  E+IG +    +L   P  VIVG K  +D  V ++ R  G +  + ++E I
Sbjct: 581 ----DDRNEKIGRKIRDNELKRVPYMVIVGEKEAADGLVSMRERGGGEQATLRVDEFI 634


>gi|289548737|ref|YP_003473725.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182354|gb|ADC89598.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 645

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 163/411 (39%), Gaps = 55/411 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +    REE  + G   +  P + +A LW +SG  D Y + M    
Sbjct: 263 GLVIWLPKGGIYRKVLEDYWREEHLKRGYQLVYTPHIGNAKLWQKSGHLDHYRQNMFPPM 322

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  D+     P +      I++S ++SYR+LPF   ++   +R E+     G+MR R F 
Sbjct: 323 ELEDEEYFVKPMNCPFHIAIYKSKVRSYRDLPFRLAELGTVYRYEMSGVLHGLMRVRGFT 382

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+     P+       +     + +    G     +   + P   IG D   E    
Sbjct: 383 QDDAHII-CRPDQVDDVIQETLDFAISMLRDFGFDEFKVYISTKPEDAIGSDEQWE---- 437

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                     ++  +   + S   +++       I E   A Y    DV   K+ D+L  
Sbjct: 438 ---------KAESALKKAVESMGLEYE-------IDEGGGAFYGPKIDV---KIRDAL-- 476

Query: 274 NKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
                      G ++   T    ++LP      + G D + H   M    I G++     
Sbjct: 477 -----------GRLWQCSTIQFDFNLPERFDMEYVGPDNRRHRPYMIHRAILGSIERFTG 525

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           V+   H G    W   +AP ++ ++ ++  H +  R         L + G  V  D+  E
Sbjct: 526 VLLEHHAGLLPFW---LAPVQVRVLPVQERHVEYARSVANT----LREEGFRVEVDERDE 578

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++G++   A+L   P  +IVG K + D  V ++ +  G    MSL++++++
Sbjct: 579 RLGAKIRDAELQKIPYVLIVGDKEMQDGSVSVRGKREGDLGKMSLQDLLSF 629


>gi|222152709|ref|YP_002561885.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254783540|sp|B9DU13|SYT_STRU0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222113521|emb|CAR41303.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 648

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 168/416 (40%), Gaps = 46/416 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 374 GLQRVREMTLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR---------LS 423

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T+ +   D M      EN       +L+ +       E   A Y    D
Sbjct: 424 YR-----DPKDTEKYYDNDEM-----WENAQSMLKAALDEMGVEYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 523 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKALRDRGIRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DD  E++  +   +     P Q+IVG K + D  V ++   +      SL E ++
Sbjct: 578 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRRYGSKATHTESLSEFMD 633


>gi|308509394|ref|XP_003116880.1| CRE-TARS-1 protein [Caenorhabditis remanei]
 gi|308241794|gb|EFO85746.1| CRE-TARS-1 protein [Caenorhabditis remanei]
          Length = 749

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 170/417 (40%), Gaps = 55/417 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   W P G    + +   IR++  R G  E+  P + +  LW  SG +  Y 
Sbjct: 357 FFHPLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYS 416

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++M ++    ++  +  P +      +F     +Y  LPF F    +  R+E+     G+
Sbjct: 417 EDMFKIEVEKEEFGL-KPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGL 475

Query: 150 MRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            R R F   DA+ F   D   E  K   + +  +Y ++F      ++  R E        
Sbjct: 476 TRVRRFQQDDAHIFCRKDQIAEEIKQCLDFLEYAYEKVFGFTFKLNLSTRPEG------- 528

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATS 260
              F+     GE + +               + D   +LN+   +W       A Y    
Sbjct: 529 ---FL-----GEIETW------------NQAEADLTEALNATGRKWALNPGDGAFYGPKI 568

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           D+    + D+L  N + +   ++    F    ++ L   + F     K   V +    +G
Sbjct: 569 DI---TIQDALKRNFQCATIQLD----FQLPNQFDL---SYFDEKGEKQRPVMIHRAVLG 618

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++  + A++  S+ GK   WP  ++P +  +I +  H+ V RD    +  ++ + G +V 
Sbjct: 619 SVERMTAILTESYGGK---WPFWLSPRQCKIITV--HESV-RDYASDVKKKIFEAGFEVE 672

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +D   G+ +  Q   + L  F   +++G+K   +  V ++ R   +R ++ LE++++
Sbjct: 673 YDATCGDTMNKQVRNSQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVPLEKLLS 729


>gi|169831543|ref|YP_001717525.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638387|gb|ACA59893.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 635

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 154/405 (38%), Gaps = 46/405 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+   G   + P G    + +    REE  + G +E+  P +   +LW  SG +D Y +E
Sbjct: 255 HEAGPGFPFFHPRGMVLRNELERFWREEHTKNGYLEIRTPIILRQELWERSGHWDHY-RE 313

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +     +D+     P +      ++RS + SYR LP    ++ L  R EL     G+MR
Sbjct: 314 NMYFTTIDDEKYAVKPMNCPGGILVYRSKLHSYRELPIRLGELGLVHRHELSGVLHGLMR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R F   DA+ F   PE  +    ++ +     F+R                     ++ 
Sbjct: 374 ARCFTQDDAHIF-CRPEQVEEEIVRI-MDLTEYFYR----------------QVFGFDYH 415

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V   T   +   S +  +    +     ++      + E   A Y    D H   L D L
Sbjct: 416 VELSTRPEKSLGSDEIWESATAALRRALEERAVNYKVNEGDGAFYGPKVDFH---LRDCL 472

Query: 272 PENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
                   R  + G I   F    K+ L     + G DG+ H   M    I G+M    A
Sbjct: 473 -------GRTWQCGTIQVDFQMPEKFEL----EYVGEDGQRHRPVMIHRVIYGSMERFIA 521

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           ++     G   +W   +AP ++ ++ I   H    ++  E     L + G    +D   E
Sbjct: 522 ILTEHFAGAFPVW---LAPVQVRILPITDRHAAYAQEVTEA----LLRAGVRAEFDGRNE 574

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           ++G +   A +L  P  +++G +      V ++HR  G    M L
Sbjct: 575 KVGYKIREAQVLKVPYMLVIGDREAESRTVAVRHRTAGDLGSMEL 619


>gi|239827997|ref|YP_002950621.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259516491|sp|C5D639|SYT_GEOSW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239808290|gb|ACS25355.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 644

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 170/403 (42%), Gaps = 36/403 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y   M   
Sbjct: 264 QGLPLWLPKGATIRRIIERYIVDKEIELGYQHVYTPVLGSVELYKTSGHWDHYKDNMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++S I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNEQLVLRPMNCPHHMMIYKSKIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFKRVVNLILEVYKDFGLDEYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             + + +   D M     +   +  D + L     E   A Y    DV   ++  +L ++
Sbjct: 429 PHDKEKYYDDDEMWEKAQNMLREAMDELGLEYYEAEGEAAFYGPKLDV---QVRTALGKD 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYIGEDGKPHRPVVIHRGVVSTMERFVAFLIEEY 537

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +     +  D   K+   L   G  V  D+  E+IG + 
Sbjct: 538 ---KG-AFPTWLAPVQVEVIPVSPAAHL--DYAYKVKEALQSQGFRVEVDERDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A +   P  ++VG K ++++ V ++       E MSL++ I
Sbjct: 592 REAQIQKIPYMLVVGDKEMAENAVNVRKYGEQKSETMSLDDFI 634


>gi|150006539|ref|YP_001301283.1| threonyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|319642944|ref|ZP_07997580.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|166223322|sp|A6L7J7|SYT_BACV8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149934963|gb|ABR41661.1| threonyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|317385492|gb|EFV66435.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 646

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/440 (22%), Positives = 167/440 (37%), Gaps = 70/440 (15%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L + T M+    KG+  WLP G      +   +R  Q R    E+  P + + +L++ SG
Sbjct: 252 LFMFTDMV---GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKNLYITSG 308

Query: 85  RYDSYGKEMLRLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            Y  YGK+  +     ++   Y   P +      I+++  +SY++LP    +     R E
Sbjct: 309 HYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRIAEFGTVCRYE 368

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R F   DA+ F   P+  K  + ++      +F  +  +++  +     
Sbjct: 369 QSGELHGLTRVRSFTQDDAHLF-CRPDQVKEEFLRVMDIINIVFKSMNFENVEAQ----- 422

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                    I L D    + +   D                       E W     A  +
Sbjct: 423 ---------ISLRDKVNREKYIGSD-----------------------ENWEKAEQAIIE 450

Query: 262 VHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGK 308
              EK   +  E    +  G +        +G  +  GT    Y+LP      + G+D +
Sbjct: 451 ACEEKGLTAKVEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYMGSDNQ 510

Query: 309 DHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDA 364
            H  V +     G+M R VA +IE +  GK  +W  PD VA   IS        +   + 
Sbjct: 511 KHRPVMIHRAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNEY 561

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A L K       DD  E+IG +    ++   P  +IVG K   + +V ++ +  G
Sbjct: 562 AEQVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVRKQGEG 621

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M +EE     +   SN
Sbjct: 622 DKGTMKIEEFGKNLAEEVSN 641


>gi|291549825|emb|CBL26087.1| prolyl-tRNA synthetase, family I [Ruminococcus torques L2-14]
          Length = 478

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 164/405 (40%), Gaps = 70/405 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG  ++LP G    +N+   +      TG   + +P +   + L  E    + +  E+  
Sbjct: 36  KGCMNYLPNGYALWENIQKNLDARFKETGVENVYLPVMIPESLLQKEKDHIEGFAPEVAW 95

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     +   +     PT E +  D++   ++SYR+LP  + Q    L++    RP    
Sbjct: 96  VTHGGLEELQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +RSREFL ++ ++   T E ++    +M+  Y R F +  L +IP               
Sbjct: 153 LRSREFLWQEGHTIHATYEEAEERTKQMWRVY-RDFAQDVL-AIP--------------- 195

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +V     E++ F                  D  ++ +++    A  +ATS         
Sbjct: 196 -VVSGRKTESEKFAGA--------------QDTYTIEALMHDGKALQSATS--------- 231

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                           H F  G+ +       +   + + H V   S+G+ + R++ A+I
Sbjct: 232 ----------------HFF--GSSFPSAFGIQYSDKNNELHEVYETSWGL-STRIIGALI 272

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               D  G++ P  +AP +  +I I  H +   D   ++   L   G  V  DD  +  G
Sbjct: 273 MVHGDDSGLVIPPRIAPVQTMIIPIAQHKEGVLDKANELVDTLKAAGYKVKIDDSDKAPG 332

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +F+  ++LG P ++ +G K + +++  I  R T  +  +SL+E+
Sbjct: 333 WKFSGQEILGIPTRIEIGPKDIENNQAVIVRRDTREKIVVSLDEL 377


>gi|41615004|ref|NP_963502.1| prolyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M]
 gi|74580044|sp|Q74ND5|SYP_NANEQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|40068728|gb|AAR39063.1| NEQ210 [Nanoarchaeum equitans Kin4-M]
          Length = 537

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 170/421 (40%), Gaps = 34/421 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG+  + P G KA   + +++  +    GA     P +    ++  ES     + +E+  
Sbjct: 29  KGMPVYKPYGYKAFKFLMSLLENKLESIGAEPAWFPIVIPYSIFKKESEHIKGFEEEVFW 88

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D+ +  +I  PT E  M  +F   I+SYR+LP   Y     +R E +    ++R
Sbjct: 89  IERAGNDKLEDPLILRPTSETEMYYMFAKWIESYRDLPLIIYMTNTVYRYETKSTKALIR 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRA---ESGPIGGDLS 207
            RE L  + +S   + E ++    K    Y  IF   L L  I +R    +  P G +  
Sbjct: 149 GREVLWNETHSVHRSEEDAREHMAKAKEVYDYIFWDVLYLPYIWVRRPEWDKFPGGEETY 208

Query: 208 HEFIVLAD-----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD- 261
               ++ D      G   +   K    F IP E    D     +   +++  P     D 
Sbjct: 209 AADAIMPDGRFLQVGTIHLLGQK----FAIPFEIKFLD----YHPFYKKYGDPNIYIKDK 260

Query: 262 ------VHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                 VH  K F + L + K      I++G   Y  +     ++   K  D +  YV  
Sbjct: 261 NGNEYKVHAPKEFWEELEKGKLTKTYTIKIGDKEYTISSIE-EINEKLKEYDFR-KYVWQ 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            SYGI +MR     +    D  G++ P  +AP +I +I I   D        K    L K
Sbjct: 319 TSYGI-SMRAFGGALYWLGDDLGLVMPYKIAPIQIVIIPILGKDDTKVIEYSKKVYELIK 377

Query: 375 VGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               V+ D D  +  G ++   DL+G PL++ +G K V ++ + I  R    +  +SL E
Sbjct: 378 DKYRVYLDSDDTKTPGYKYYYYDLIGVPLRIDIGLKEVENNSITIVRRDNKKKYTISLNE 437

Query: 434 V 434
           +
Sbjct: 438 L 438


>gi|301066747|ref|YP_003788770.1| threonyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300439154|gb|ADK18920.1| Threonyl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 657

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 260 GLPYWMPNGATIRRVIERYIIDKEIADGYEHVYTPVLANLDLYKTSGHWDHYREDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQEEFKKILRLIMDVYEDFNITDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 425 PKNTEKYFDDDEMWTRSQSMLKGAMDDLKLDYYEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFNL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP +  LI +  ++ +  D   +I  ++   G  V  DD  E++G +  
Sbjct: 534 KGAFPTW---LAPTQAVLIPV--NNDLHLDYVNRIKKQMLAAGLRVKVDDRNEKMGYKIR 588

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  V+VG K ++D+ V ++
Sbjct: 589 EAQTKKIPYTVVVGDKELNDAAVSVR 614


>gi|191638692|ref|YP_001987858.1| threonyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|239632065|ref|ZP_04675096.1| ser-tRNA(Thr) hydrolase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|238693055|sp|B3WF49|SYT_LACCB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190712994|emb|CAQ67000.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Lactobacillus casei BL23]
 gi|239526530|gb|EEQ65531.1| ser-tRNA(Thr) hydrolase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327382733|gb|AEA54209.1| Threonyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327385920|gb|AEA57394.1| Threonyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 657

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 260 GLPYWMPNGATIRRVIERYIIDKEIADGYEHVYTPVLANLDLYKTSGHWDHYREDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQEEFKKILRLIMDVYEDFNITDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 425 PKNTEKYFDDDEMWTRSQSMLKGAMDDLKLDYYEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFNL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP +  LI +  ++ +  D   +I  ++   G  V  DD  E++G +  
Sbjct: 534 KGAFPTW---LAPTQAVLIPV--NNDLHLDYVNRIKKQMLAAGLRVKVDDRNEKMGYKIR 588

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  V+VG K ++D+ V ++
Sbjct: 589 EAQTKKIPYTVVVGDKELNDAAVSVR 614


>gi|166365884|ref|YP_001658157.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088257|dbj|BAG02965.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 599

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 169/428 (39%), Gaps = 64/428 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M   +
Sbjct: 213 GLPLWTPKGTLIRSLLEDFLKKEQLKRGYLPVVTPHIARVDLFKISGHWQKYKEDMFPMM 272

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           AD  + A      +  P +      I++S ++SYR LP    +    +R E      G+ 
Sbjct: 273 ADDEESAGKEIGFVLKPMNCPFHIQIYKSDLRSYRELPMRLAEFGTVYRYEQSGELGGLT 332

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGP-IGG 204
           R R F + D++ F +TPE     +  +    L +F  L LK+   R      ES   IG 
Sbjct: 333 RVRGFTVDDSHLF-VTPEQLDKEFLSVVDLILTVFKSLQLKNFKARLSFRDPESDKYIGS 391

Query: 205 DLSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFD---DIISLNSIVEQWTAPYAATS 260
           D + E    A     Q       MD F  P E   +    D I  +++  +W        
Sbjct: 392 DEAWEKAQSAIRKAVQTLG----MDYFEAPGEAAFYGPKLDFIFQDALEREW-------- 439

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSY 317
                                 ++G +      Y+LP      +   DG +   V +   
Sbjct: 440 ----------------------QLGTV---QVDYNLPERFELEYVAEDGNRKRPVMIHRA 474

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G++  +  ++   + G   +W   +AP +I L+ +        D  +++ A++  +G 
Sbjct: 475 PFGSLERLIGILIEEYAGDFPLW---LAPVQIRLLPV---SDTQLDYAKEVTAKMQLLGI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D  GE++G     A+    P+  +VG+K +  + + I+ R TG    +S+EEV+  
Sbjct: 529 RAETDTSGERLGKMIRNAETAKIPVMAVVGAKEMESNSLSIRTRATGDLGVISVEEVVAK 588

Query: 438 ASHRFSNN 445
                 N+
Sbjct: 589 LESAIQNH 596


>gi|56421254|ref|YP_148572.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297529120|ref|YP_003670395.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|73919792|sp|Q5KWD2|SYT_GEOKA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56381096|dbj|BAD77004.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297252372|gb|ADI25818.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 652

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 184/436 (42%), Gaps = 44/436 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    Q  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRLLEEAKERDHRKLGKELELFTTS-QQVGQGLPLWLPKGATIRRIIERYIVDKEVALG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + SY
Sbjct: 293 YDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G++    R         LS+      D  + + +   D M         +  D + 
Sbjct: 412 YKDFGIEEYSFR---------LSYR-----DPHDKEKYYDDDEMWEKAQRMLREAMDELG 457

Query: 245 LNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L    T+ 
Sbjct: 458 LDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFDL----TYI 506

Query: 304 GADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I +     + 
Sbjct: 507 GEDGKPHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVKVIPVSPEAHL- 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH- 420
            D    +   L + G  V  D+  E+IG +   A +   P  ++VG K VS+  V ++  
Sbjct: 562 -DYAYDVQRTLKERGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEVSERAVNVRRY 620

Query: 421 -----RLTGIREDMSL 431
                R  G+ E M+L
Sbjct: 621 GEKESRTMGLDEFMAL 636


>gi|15615703|ref|NP_244007.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
 gi|20139931|sp|Q9K866|SYT_BACHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10175763|dbj|BAB06860.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
          Length = 645

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 175/409 (42%), Gaps = 40/409 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ + G   +  P L S++L+  SG +D Y  +M   
Sbjct: 266 QGLPLWLPKGATIRRIIERYIVDKEEKLGYQHVYTPVLASSELYKTSGHWDHYKDDMFPT 325

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +  ++ ++  P +      ++++ ++SYR LP    ++ L  R E+     G+ R R  
Sbjct: 326 MEMENEELVLRPMNCPHHMMVYKTEMRSYRQLPLRIAELGLMHRYEMSGAVSGLQRVRGM 385

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++      ++   GLK+   R         LS+      D
Sbjct: 386 TLNDAHIF-CRPDQIKDEFVRVVRLIQAVYEDFGLKNYSFR---------LSYR-----D 430

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             + + +   D M         +  D + L     E   A Y    DV   ++  +L ++
Sbjct: 431 PEDKEKYFDDDNMWNKAQGMLKEAMDELELEYFEAEGEAAFYGPKLDV---QVRTALGKD 487

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA ++E  
Sbjct: 488 ETLSTVQLD----FLLPERFDL----TYVGEDGQPHRPVVVHRGVVSTMERFVAFLLEEY 539

Query: 333 HDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I +  +AH +  ++  E     L + G  V  D+  E+IG 
Sbjct: 540 ---KG-AFPTWLAPVQVQVIPVSPEAHLEYAKNVQET----LQQAGIRVEIDERDEKIGY 591

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +   A +   P  +++G K V  + V ++         M L+E + + +
Sbjct: 592 KIREAQMQKIPYMLVLGDKEVEANGVNVRKYGEKDSSSMGLDEFVRHVA 640


>gi|261418266|ref|YP_003251948.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767774|ref|YP_004133275.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374723|gb|ACX77466.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112640|gb|ADU95132.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 652

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 184/436 (42%), Gaps = 44/436 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    Q  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRLLEEAKERDHRKLGKELELFTTS-QQVGQGLPLWLPKGATIRRIIERYIVDKEVALG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + SY
Sbjct: 293 YDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G++    R         LS+      D  + + +   D M         +  D + 
Sbjct: 412 YKDFGIEEYSFR---------LSYR-----DPHDKEKYYDDDEMWEKAQRMLREAMDELG 457

Query: 245 LNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L    T+ 
Sbjct: 458 LDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFDL----TYI 506

Query: 304 GADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I +     + 
Sbjct: 507 GEDGKPHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVKVIPVSPEAHL- 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH- 420
            D    +   L + G  V  D+  E+IG +   A +   P  ++VG K VS+  V ++  
Sbjct: 562 -DYAYDVQRTLKERGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEVSERAVNVRRY 620

Query: 421 -----RLTGIREDMSL 431
                R  G+ E M+L
Sbjct: 621 GEKESRTMGLDEFMAL 636


>gi|254881560|ref|ZP_05254270.1| threonyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294778842|ref|ZP_06744259.1| threonine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|254834353|gb|EET14662.1| threonyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294447295|gb|EFG15878.1| threonine--tRNA ligase [Bacteroides vulgatus PC510]
          Length = 646

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/440 (22%), Positives = 167/440 (37%), Gaps = 70/440 (15%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L + T M+    KG+  WLP G      +   +R  Q R    E+  P + + +L++ SG
Sbjct: 252 LFMFTDMV---GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKNLYITSG 308

Query: 85  RYDSYGKEMLRLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            Y  YGK+  +     ++   Y   P +      I+++  +SY++LP    +     R E
Sbjct: 309 HYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRIAEFGTVCRYE 368

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R F   DA+ F   P+  K  + ++      +F  +  +++  +     
Sbjct: 369 QSGELHGLTRVRSFTQDDAHLF-CRPDQVKEEFLRVMDIINIVFKSMNFENVEAQ----- 422

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                    I L D    + +   D                       E W     A  +
Sbjct: 423 ---------ISLRDKVNREKYIGSD-----------------------ENWEKAEQAIIE 450

Query: 262 VHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGK 308
              EK   +  E    +  G +        +G  +  GT    Y+LP      + G+D +
Sbjct: 451 ACEEKGLTAKVEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYMGSDNQ 510

Query: 309 DHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDA 364
            H  V +     G+M R VA +IE +  GK  +W  PD VA   IS        +   + 
Sbjct: 511 KHRPVMIHRAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNEY 561

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A L K       DD  E+IG +    ++   P  +IVG K   + +V ++ +  G
Sbjct: 562 AEQVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVRKQGEG 621

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M +EE     +   SN
Sbjct: 622 DKGTMKIEEFGKNLAEEVSN 641


>gi|228472826|ref|ZP_04057584.1| threonine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275877|gb|EEK14643.1| threonine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 649

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 168/431 (38%), Gaps = 63/431 (14%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q + G
Sbjct: 230 YLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKQAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRND-KAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   +L+V SG ++ YGK+  + +A  N+ +  +  P +     +I+ SH  
Sbjct: 289 YEQVVTPHIGHKNLYVTSGHWEKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPW 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +    L
Sbjct: 349 SYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDAEFKHVIDLVL 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG  +   +              + L D      +   D                
Sbjct: 408 YVFGSLGFDNFTAQ--------------VSLRDPENLSKYIGTD---------------- 437

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT-- 292
                  E W     A  +   EK    + E    +  G +        +G  +  GT  
Sbjct: 438 -------ENWAKAENAIINAAKEKNLTYVIETGEAAFYGPKLDFMVKDALGRSWQLGTIQ 490

Query: 293 -KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y+LP      +KGAD + H  V +     G+M    A++     G   +W   + P +
Sbjct: 491 VDYNLPERFDLWYKGADNELHRPVMIHRAPFGSMERFVAILLEHTAGNLPLW---LVPEQ 547

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ I    +       K+   L +       D+  E IG +   A+   FP  VIVG 
Sbjct: 548 VNILCI---SEKYEGYAHKVANLLQEADLRPHVDNRNETIGKKIREAETQKFPYMVIVGE 604

Query: 409 KFVSDSKVEIK 419
           +   ++ + ++
Sbjct: 605 EEEKNATLSVR 615


>gi|89100585|ref|ZP_01173444.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084689|gb|EAR63831.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 423

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 185/449 (41%), Gaps = 71/449 (15%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H+ +   L   M  + + G+  +LP G +  + +  + +++ ++ G  E+  P 
Sbjct: 25  EAEKRNHRKLGAELELFMFREEAPGMPFYLPKGMQVRNILENLWKQKHHKAGYHEVKTPI 84

Query: 74  LQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           +    LW +SG +D Y + M     D +D A+   P        I+ S  +SYR LP  +
Sbjct: 85  MMKQALWEQSGHWDHYHENMYFSKVDEHDYAI--KPMSCPGAVLIYSSKRRSYRELPLRY 142

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++ L  R EL     G++R R F   DA+ F                          ++
Sbjct: 143 AELGLVHRHELSGSLNGLLRVRSFTQDDAHLF--------------------------VR 176

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              ++ E+  +  +L HEF  L    E +V  S    +F    E  +  +  SL S++++
Sbjct: 177 EDQIKEEAAKV-LELVHEFYSLFGF-EYKVELSTRPEEFMGSEETWNLAE-ASLESVLQE 233

Query: 252 WTAPYAATS----------DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              P+   S          D H   + DSL  + +     ++      FG +Y       
Sbjct: 234 RGIPFEINSGDGAFYGPKIDFH---ITDSLGRSWQCGTVQLDFQMPEQFGCQYI------ 284

Query: 302 FKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQ 359
             G D   H   M    I G++    A++   + G    W   ++P +  ++ + +AH  
Sbjct: 285 --GEDNLAHRPIMIHRAIYGSIERFLAILIEHYAGDFPFW---LSPVQAMVLPVSEAHIG 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +    + ARL + GC +  D   E++G +   A+L   P  +I+G K +      ++
Sbjct: 340 YALE----VKARLEEAGCRIDIDSRAEKLGLKIREAELQKVPYMIIIGEKEIEQGGAALR 395

Query: 420 HRLTGIREDMSLEEVINYASHRFSN-NRP 447
            +  G    + L+E+++    RF + +RP
Sbjct: 396 KKGAGNLGVLHLQELLD----RFRDEDRP 420


>gi|319410089|emb|CBY90425.1| threonyl-tRNA synthetase (threonine-tRNA ligase; ThrRS) [Neisseria
           meningitidis WUE 2594]
          Length = 637

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEQRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++ A+L   G     D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRAELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|126651397|ref|ZP_01723604.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591926|gb|EAZ86009.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 643

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 187/433 (43%), Gaps = 38/433 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFTTS-QKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++    R E+     G+ R R   + DA+ F + P+  K  + K+    L
Sbjct: 351 SYRSLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIF-VRPDQIKAEFQKVVQLIL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    L     R         LS+      D  +T+ + + D M     S   +  D 
Sbjct: 410 EVYKDFDLNDYSFR---------LSYR-----DPADTEKYFNDDAMWEKAQSMLKEAMDE 455

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + L+    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    +
Sbjct: 456 LGLDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----S 504

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DGK H   +   G+ +   R VA +IE   + KG  +P  +AP ++ +I +   ++
Sbjct: 505 YVGEDGKPHRPVVIHRGVVSTMERFVAFLIE---EYKG-AFPTWLAPVQVEVIPVS--NE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V  S V ++
Sbjct: 559 AHFDYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEASGVNVR 618

Query: 420 HRLTGIREDMSLE 432
              +   E +S E
Sbjct: 619 RYGSKDSETISFE 631


>gi|323344262|ref|ZP_08084488.1| threonine--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323094991|gb|EFZ37566.1| threonine--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 654

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 157/416 (37%), Gaps = 65/416 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R+ Q R G  E+  P + S +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTELRLRLQDMLRKIQKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     ++F    +SY++LP    +    +R E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVFAWKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+                      IF R      P + +S         EF+ +
Sbjct: 383 SFTQDDAH----------------------IFCR------PDQVKS---------EFLRV 405

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  +T VF   +F +F       D  D        E W     A  +   EK  D+   
Sbjct: 406 MDIIQT-VFKIFNFDNFEAQISLRDPKDREKYIGADEVWEESEQAIKEACAEKGLDAKIA 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLPMSATFKGADG---KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP     +  D    K   V +     
Sbjct: 465 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPQRFKLEYTDEDNVKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D  +K+       G 
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAKKVSKYFDAQGV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DD  E+IG +    +L+  P  VIVG K  +D  V ++ +  G +  M++EE
Sbjct: 577 RATIDDRNEKIGRKIRDNELMRVPYMVIVGEKEAADGLVSMRKQGGGEQATMTMEE 632


>gi|56964462|ref|YP_176193.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56910705|dbj|BAD65232.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 643

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 169/389 (43%), Gaps = 40/389 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P L S++L+  SG +D Y  +M   
Sbjct: 264 QGLPLWLPKGATIRRIIERYIVDKEERLGYQHVYTPILGSSELYKTSGHWDHYQDDMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      +++  ++SYR LP    ++ +  R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMVYKQDMRSYRQLPLRIAELGMMHRYEMSGAVSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++      ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-CRPDQIKEEFVRVVRLIQEVYKDFGLNDYKFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNEKLFDSLP 272
             + + +   D M     +   +  D + L    +I E   A Y    DV   ++  +L 
Sbjct: 429 PEDKEKYFDDDDMWNKAQAMLKEAMDTLGLPYYEAIGE--AAFYGPKLDV---QVKTALG 483

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA ++E
Sbjct: 484 KEETLSTVQLD----FLLPERFDL----TYVGEDGKLHRPVVVHRGVVSTMERFVAFLLE 535

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                KG + P  +AP ++ +I +   ++V  D  +++  +L + G  V  DD  E++G 
Sbjct: 536 EY---KGAL-PTWLAPVQVQVIPVS--NEVHLDYAKRVIEQLQQAGVRVEIDDRDEKLGY 589

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   A +   P  +++G K V+   V ++
Sbjct: 590 KIREAQIQKIPYMLVLGDKEVAAEAVNVR 618


>gi|89890591|ref|ZP_01202101.1| prolyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89517506|gb|EAS20163.1| prolyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 492

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 150/341 (43%), Gaps = 65/341 (19%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D+ GK  +    + ++ ++  PT E ++ + ++  I+SYR+LP    Q     R E+R R
Sbjct: 102 DNPGKLRVDPEAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R+ EFL ++ ++         HS  K  +                 AE+  +  D+
Sbjct: 162 L-FLRTAEFLWQEGHT--------AHSTKKEAI-----------------AEAEQMN-DI 194

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F             +++FM  P+         +  L +  E+    +A   + +   
Sbjct: 195 YADF-------------AQNFMAIPV---------VKGLKTESER----FAGADETY--- 225

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             ++L ++     + ++ G   + G  ++      F   +GK  YV   S+G+ + R++ 
Sbjct: 226 CIEALMQD----GKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEYVWATSWGV-STRLMG 280

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGCDVFWDD 383
           A+I +  D KG++ P ++AP ++ ++ I   D+   +      ++   L   G  V +D 
Sbjct: 281 ALIMTHSDDKGLVLPPNLAPNQVVIVPIFKTDEQFEEITTVVNELMKSLRLKGVTVKYDK 340

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + G++FA  +L G PL++ +G++ + +  VE+  R T
Sbjct: 341 RDTLRPGAKFAQHELQGVPLRIAIGARDLENGTVELARRDT 381


>gi|300856610|ref|YP_003781594.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300436725|gb|ADK16492.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 637

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 184/444 (41%), Gaps = 60/444 (13%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      +L L +  IH+   G   + P G    + +    R+  ++
Sbjct: 229 KDYLTMMEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNELQNYWRQVHHK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + + +LW +SG +D Y KE +     +D+     P +      ++++ I 
Sbjct: 287 AGYDEIMTPIILNEELWHQSGHWDHY-KENMYFTKIDDEDYAIKPMNCPGSILVYKNKIH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH---SYNKMFV 179
           SYR+LP  + ++ +  R E      G+MR R F   DA+ F +T +  K    +  K+  
Sbjct: 346 SYRDLPIRYGEMGIVHRHEKSGALHGLMRVRCFTQDDAHIF-MTKDNMKDEIVNVIKLID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           S+ ++F       +  R E   +G D   E    A T   +       +D+ +   +  F
Sbjct: 405 SFYKVFKFEYFVELSTRPEDS-MGSDEDWE----AATEGLKDALKAVGLDYKVNEGDGAF 459

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSL 296
                           Y    D H   L DS             +G  +  GT    + +
Sbjct: 460 ----------------YGPKIDFH---LKDS-------------IGRTWQCGTVQLDFQM 487

Query: 297 P--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P     T+ GADG+ H  V +     G++     ++  ++ G    +P  +AP ++ ++N
Sbjct: 488 PERFDLTYVGADGEKHRPVMVHRVVFGSIERFIGILIENYAG---AFPAWLAPVQVEVMN 544

Query: 354 IK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           I  A D    +  EK+     +V  D+      E+IG +   A +   P  +++G K + 
Sbjct: 545 ITDAQDDYVNEVVEKLKENDIRVESDM----RNEKIGYKIREAQMQKVPYMIVLGEKEMK 600

Query: 413 DSKVEIKHRLTGIREDMSLEEVIN 436
           D  + ++ R  G    M+L++ I+
Sbjct: 601 DKTISVRSRKGGDMGTMALDDFIS 624


>gi|326336128|ref|ZP_08202300.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691637|gb|EGD33604.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 649

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 178/460 (38%), Gaps = 64/460 (13%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q + G
Sbjct: 230 YLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKQAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRND-KAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   +L+V SG ++ YGK+  + +A  N+ +  +  P +     +I+ SH  
Sbjct: 289 YEQVVTPHIGHKNLYVTSGHWEKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPW 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +    L
Sbjct: 349 SYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDAEFKHVIDLVL 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG ++   +              + L D      +   D                
Sbjct: 408 YVFGSLGFENFTAQ--------------VSLRDPENLSKYIGSD---------------- 437

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT-- 292
                  E W    +A  +   EK    + E    +  G +        +G  +  GT  
Sbjct: 438 -------ENWAKAESAIINAAKEKNLTYVIETGEAAFYGPKLDFMVKDALGRSWQLGTIQ 490

Query: 293 -KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y+LP      +KGAD + H  V +     G+M    A++     G   +W   + P +
Sbjct: 491 VDYNLPERFDLWYKGADNEMHRPVMIHRAPFGSMERFVAILLEHTAGNLPLW---LVPEQ 547

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++++    +       K+   L +       D+  E IG +   A+   +P  +IVG 
Sbjct: 548 VNILSV---SEKYEGYAYKVANLLQEADLRPHVDNRNETIGKKIREAETQKYPYMIIVGE 604

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN-RP 447
           +   +  + ++         M + + I       + N RP
Sbjct: 605 EEEKNGTLSVRKHGGADLGTMKIADFITLIQEEINKNIRP 644


>gi|288959315|ref|YP_003449656.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911623|dbj|BAI73112.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 650

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 152/393 (38%), Gaps = 42/393 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   IR +      +E+  P L  + L+  SG +D YG 
Sbjct: 259 VQEEAVGSVFWHPKGWTLYRTLETYIRTKLKAADYVEVKTPQLIDSSLFKASGHWDMYGD 318

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M ++ AD  +K +   P +      IFR+ ++SYR+LP    +     R+E      G+
Sbjct: 319 NMFKVEADGGEKLLGIKPMNCPGHVQIFRNGLRSYRDLPIRMAEFGACHRNEPSGALHGI 378

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F  T +  +    + F   L ++  LG   I ++    P     + E
Sbjct: 379 MRVRAFTQDDAHIF-CTEDQVQSEAAEYFKLQLGVYKDLGFDQISVKLALRPDVRTGADE 437

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+    Q           +P E                  A Y    + H   L D
Sbjct: 438 LWDRAEGALAQALRDAGLEYEELPGEG-----------------AFYGPKVEFH---LTD 477

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVA 326
           ++        R  + G + Y     +LP  + A++ G DG  H   M    I G+M    
Sbjct: 478 AI-------GRTWQCGTLQY---DPNLPERLDASYIGEDGARHRPIMLHRAILGSMERFI 527

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + GK  +W   ++P ++++  I +      D   ++   L + G  V  D   E
Sbjct: 528 GMLIEHYAGKFPLW---LSPVQVTVATITSE---ADDYAVEVAKLLKRKGLRVELDTRNE 581

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +I  +     L   PL ++VG +   +  V ++
Sbjct: 582 KINLKVREHSLQKVPLMLVVGKREAEERTVALR 614


>gi|194017643|ref|ZP_03056254.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010915|gb|EDW20486.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 477

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 135/328 (41%), Gaps = 68/328 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  + +++ I SYR+LP  + Q    +++    RP    +R+ EFL ++ ++   
Sbjct: 113 PTSEVLFAEHYKNIIHSYRDLPKLYNQWANVVRWEKTTRP---FLRTLEFLWQEGHTCHE 169

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T + +     +M   Y  +   L   +IP                ++     E + F   
Sbjct: 170 TEQEAIEETERMLHIYASLCEEL--LAIP----------------VIKGRKTEKEKFAGA 211

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
            F                            Y   S +H+               + ++  
Sbjct: 212 RFT---------------------------YTVESLMHD--------------GKALQTA 230

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              +FG  ++      F   +GK  +VQ  S+G    R++ A+I    D +G++ P ++A
Sbjct: 231 TSHFFGNGFAKAFGIEFLNREGKLEHVQQTSWGF-TTRIIGAMIMVHGDDRGLVLPPNIA 289

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           P ++ ++ I +H +   D   ++  RL+++   D+  D   +Q G +F   ++ G PL+V
Sbjct: 290 PTQVRIVPIASHKEGVLDHAYELKERLTRIARADI--DASDKQPGWKFNECEMQGIPLRV 347

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            VG K +   +V +  R TG ++ ++L+
Sbjct: 348 EVGPKDIEKGQVMLARRDTGEKQAVTLD 375


>gi|296876104|ref|ZP_06900158.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296432815|gb|EFH18608.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 647

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 165/415 (39%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEIAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEEEFKKILQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
              +   D  +   +   D M      EN         DD+       E   A Y    D
Sbjct: 422 ---LSYRDPEDKHKYFDNDEM-----WENAQRMLKAAVDDMGVEYYEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKQLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D+  E++  +   +     P Q+IVG K + D  V ++       E MS++  +
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVRRYGQKETETMSVDAFV 632


>gi|282555136|gb|ADA82660.1| ProS [Candidatus Blochmannia nearcticus]
          Length = 64

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 40/63 (63%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P +    SH+LMLR G+I Q S GIYSWLP G + L  +  IIREE
Sbjct: 1  MRVSQYLLATLKEIPSNCTAISHRLMLRAGLIRQVSSGIYSWLPTGXRVLRKIKNIIREE 60

Query: 61 QNR 63
            +
Sbjct: 61 MGK 63


>gi|30022651|ref|NP_834282.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|29898209|gb|AAP11483.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 646

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 230 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 289

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 290 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 349

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 350 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 408

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 409 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 454

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 455 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 506

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              ++ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 507 ---SYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 559

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 560 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 617

Query: 416 VEIK 419
           V ++
Sbjct: 618 VNVR 621


>gi|313890276|ref|ZP_07823910.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121381|gb|EFR44486.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 648

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 166/404 (41%), Gaps = 35/404 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++  +G   +  P + S D +  SG +D Y ++M   
Sbjct: 261 QGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPMASVDFYKTSGHWDHYREDMFPT 320

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +     ++++ H+ SYR LP    ++ +  R E      G+ R RE
Sbjct: 321 MDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAELGMMHRYEKSGALSGLQRVRE 380

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D + F +TP+  +  + +     + ++    L     R         LS+      
Sbjct: 381 MTLNDGHLF-VTPDQIQEEFQRALQLIIDVYKDFNLTDYRFR---------LSYR----- 425

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPE 273
           D  + + +   D M     S      D + ++    E   A Y    D+   ++  +L  
Sbjct: 426 DPNDKEKYFDNDEMWEKAQSMLKAALDEMGVDYFEAEGEAAFYGPKLDI---QVKTALGN 482

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESS 332
            + +S   ++    F    ++ L     + GADG++H   M   G I  M    A++  +
Sbjct: 483 EETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVISTMERFTAILIET 534

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + G    W   +AP ++++I I     V  D   ++   L   G  V  DD  E++  + 
Sbjct: 535 YKGAFPTW---LAPHQVTVIPISNEAHV--DYAWEVAKLLRDKGVRVDVDDRNEKMQYKI 589

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +     P Q+IVG K + +  V ++   + + + +++ E ++
Sbjct: 590 RASQTGKIPYQLIVGDKEMDEKSVNVRRYGSKVTQTVAISEFVD 633


>gi|306825714|ref|ZP_07459053.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432075|gb|EFM35052.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 647

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 163/394 (41%), Gaps = 36/394 (9%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEIAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDL 206
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R +   P   + 
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEEEFKKILQLIIDVYEDFNLTDYRFRLSYRDP---ED 429

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            H++    +  E      K  MD      + + D   +     E   A Y    D+   +
Sbjct: 430 KHKYFDNDEMWENAQRMLKAAMD------DMELDYFEA-----EGEAAFYGPKLDI---Q 475

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           +  +L + + +S   ++    F    ++ L     + GADG++H   M   G I  M   
Sbjct: 476 VKTALGKEETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGVISTMERF 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G     D+  
Sbjct: 528 TAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRADVDERN 582

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           E++  +   +     P Q+IVG K + D  V ++
Sbjct: 583 EKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616


>gi|269102906|ref|ZP_06155603.1| threonyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162804|gb|EEZ41300.1| threonyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 643

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 158/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   +RE+ N+    E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWTIFRELEVFVREKLNQYDYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTESQVQQEVTSCIEMVYDTYKTFGFENIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + + MD P                I E   A Y    +     L
Sbjct: 433 ----AMWDKAEADLVTALESMDIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 472 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        +  ++I  +L K G  V  D  
Sbjct: 522 FIGILIEDYAG---FFPTWLAPQQAVVMNITDSQS---EYVQEIVEKLKKCGIRVNADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G + V   +V ++ R         +++++ Y     S+
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEVEAGEVAVRTRKGKDLGKFKIDDLVAYMQQEISS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|147678291|ref|YP_001212506.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146274388|dbj|BAF60137.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 640

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 155/404 (38%), Gaps = 57/404 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    REE  + G  E+  P + S +LW  SG ++ Y +
Sbjct: 260 IHDEGPGFPFFHPKGMILRNELEKFWREEHQKRGYQEIRTPVILSRNLWERSGHWEHY-R 318

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D      P +      I+++ + SYR LP    ++ L  R EL     G+M
Sbjct: 319 ENMYFTRIDDGDYAVKPMNCPGSILIYKNRLHSYRELPIRLAELGLVHRHELSGVLHGLM 378

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYN--KMFVSYLRIF---HRLGLKSIPMRAESGPIGGD 205
           R R F   DA+ F L  +  +      ++   + R+F   + + L + P +A    +G D
Sbjct: 379 RVRCFTQDDAHIFMLPSQVKEEIIGVIELVDDFYRVFGFPYHVELSTRPEKA----MGSD 434

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E      TG  +       +D+ +   +  F                Y    D H  
Sbjct: 435 ETWEMA----TGALRDALEARGLDYRVNEGDGAF----------------YGPKIDFH-- 472

Query: 266 KLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGA 321
            L DSL        R  + G I   F    K+ L    T+ G DG+ H  V +     G+
Sbjct: 473 -LQDSL-------GRTWQCGTIQLDFLMPEKFDL----TYIGEDGQKHRPVMIHRVVFGS 520

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVF 380
           +     ++     G    W   +AP ++ ++ I   H    R    K+   L+  G    
Sbjct: 521 IERFIGILTEHFAGAFPAW---LAPVQVRVLPIADRHAGYAR----KVLDCLTGAGIRAE 573

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            D   E+IG +   A     P  ++ G K   +  V ++HR TG
Sbjct: 574 LDARNEKIGYKIREAQAQKIPYMLVTGDKEAENGTVAVRHRTTG 617


>gi|28948887|pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948888|pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948889|pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948890|pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
          Length = 459

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 149/406 (36%), Gaps = 92/406 (22%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL----------------W 80
           KG   +LP G K       IIR   + +G  E   P L   DL                W
Sbjct: 28  KGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYW 87

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V  G     GK  L      D  +   PT E  +  + +  +K + +LP   YQI   FR
Sbjct: 88  VTHG-----GKTQL------DVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFR 136

Query: 141 DELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            E +    ++R RE +  K+A++   T E +++   +    Y + F  LG   IP     
Sbjct: 137 YETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLG---IPYLISK 193

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P                        ++  FP       FD I      ++         
Sbjct: 194 RP------------------------EWDKFPGAEYTMAFDTIFPDGRTMQ--------I 221

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           + VHN                          G  +S      F+   G   Y     YGI
Sbjct: 222 ATVHN-------------------------LGQNFSKTFEIIFETPTGDKDYAYQTCYGI 256

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGC 377
              RV+A++I    D KG+I P  VAP ++ ++ +  K  + +  +  ++IY +L K   
Sbjct: 257 SD-RVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKL-KGKF 314

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            V  DD   + G +F   ++ G PL++ VG K + + K+ +  R T
Sbjct: 315 RVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDT 360


>gi|307353929|ref|YP_003894980.1| prolyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157162|gb|ADN36542.1| prolyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 477

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 148/387 (38%), Gaps = 68/387 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+Y W P G         I+RE  +R     +    +   +   E+     + +E+  +
Sbjct: 35  KGLYVWFPHGFAIRKATYGILRELLDRDHEETLFPLLIPEYEFMKEAEHIKGFEEEVYWV 94

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + D  +   PT E  +  ++   ++S+ +LP   YQI   FR E +    ++R 
Sbjct: 95  TNGGLSKLDVPLALRPTSETAIYPMYALWVRSHADLPIKLYQIVNTFRYETKHTRPLIRL 154

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE    K+A++   T E +K         Y   + RL    +P+     P          
Sbjct: 155 REITSFKEAHTVHATWEEAKEQVEDAIALYKEFYERL---CVPVIMSKRP---------- 201

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                         D+  FP                      A Y   +D         +
Sbjct: 202 --------------DWDKFP---------------------GADYTIAADA-------VM 219

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+      R ++VG   + G  ++      ++  +G+  Y     YGI + R +AA+I  
Sbjct: 220 PD-----GRTLQVGTAHHLGDNFAKTFEICYEDENGEQQYAFQTCYGI-SERCIAALISI 273

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D KG++ P  +AP ++ ++ I  K   +    A + I A +   G  V  DD   + G
Sbjct: 274 HGDDKGLVLPPEIAPVQVVIVPIIMKKMAEEVTQAAKDIEAEMKAAGLRVKIDDRPLRPG 333

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +++   ++ G PL++ +G + + +  V
Sbjct: 334 AKYYHWEMRGTPLRLEIGPRDLENGVV 360


>gi|294673774|ref|YP_003574390.1| proline--tRNA ligase [Prevotella ruminicola 23]
 gi|294473292|gb|ADE82681.1| proline--tRNA ligase [Prevotella ruminicola 23]
          Length = 493

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 153/345 (44%), Gaps = 67/345 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIVRPTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E ++    KM    L+++ +                                 
Sbjct: 177 HTAHATREEAEEEAQKM----LKVYAKF-------------------------------- 200

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              ++++M  P+         +  + S  E+    +A   D +     +++ ++     +
Sbjct: 201 ---AEEWMAVPV---------VQGVKSETER----FAGALDTYT---IEAMMQD----GK 237

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++     T+   + K  YV   S+G+ + R++ A+I +  D  G++ 
Sbjct: 238 ALQSGTSHFLGQNFAKAFEVTYLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVL 296

Query: 341 PDSVAPFKISLINIKAH----DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
           P  +AP ++ +I I       +QV ++    I A  +K G  V +DD   ++ G +FA  
Sbjct: 297 PPRLAPIQVVIIPIATKPEQMEQVNKEVTPIIEALRAK-GITVKFDDADNKRPGFKFADY 355

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +L G P+++++G++ + +  +E+  R T  +E  S++ +  Y   
Sbjct: 356 ELKGVPVRLVLGARDLENGTIEVMRRDTLEKETRSIDGITEYVEQ 400


>gi|322517198|ref|ZP_08070081.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322124257|gb|EFX95773.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 648

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 158/399 (39%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEDEFKKILQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
              +   D  +   +   D M      EN         DD+       E   A Y    D
Sbjct: 422 ---LSYRDPADKHKYFDNDEM-----WENAQRMLKAAVDDMGVEYYEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++   L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKELRDRGVRAE 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616


>gi|319763197|ref|YP_004127134.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|330825391|ref|YP_004388694.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|317117758|gb|ADV00247.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|329310763|gb|AEB85178.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 639

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 149/387 (38%), Gaps = 48/387 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRDNGYQEVKAPQILDKSLWEKTGHWDKYRE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M +  +++ D A+   P +      IF+  IKSYR+LP  + +     R+E      G+
Sbjct: 315 NMFVTESEKRDYAL--KPMNCPGHILIFKQGIKSYRDLPLRYGEFGQCHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   D + F  T +  +H          R++   G   I  +  + P   IG D 
Sbjct: 373 MRVRGFTQDDGHIF-CTEDQIQHEVLAFTRLLQRVYQDFGFTDIVYKVATRPDARIGSD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 + D  E  +  S       + +   DF+             +P       +  K
Sbjct: 431 -----EIWDKAEAALIES-------LKASGCDFE------------ISP--GEGAFYGPK 464

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
           +  +L   K    R  + G I      +S+P  + A + G DG  H  V +    +G++ 
Sbjct: 465 IEYTL---KDAIGRHWQCGTI---QVDFSMPERLDAEYVGEDGGRHRPVMLHRAIVGSLE 518

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWD 382
               ++   H G   +W   +AP +++++NI  A    CR+   K+   L      V  D
Sbjct: 519 RFIGILIEQHAGALPVW---LAPVQVAVLNITDAQSDYCREIAAKLQKALPHQDLRVVQD 575

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSK 409
              E+I  +     L   P  ++ G K
Sbjct: 576 LRNEKITYKIREHALQKLPYILVAGDK 602


>gi|256370695|ref|YP_003108520.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009487|gb|ACU52847.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
          Length = 488

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 140/340 (41%), Gaps = 69/340 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +I  PT E ++ + ++  I SYR+LP  F Q     R E+RPRF  +R+ EFL ++ 
Sbjct: 112 DEELIVRPTSETIIWNSYKRWINSYRDLPILFNQWANIIRWEMRPRF-FLRTSEFLWQEG 170

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T + + +   KM   Y          SIP+       G   S E       G  +
Sbjct: 171 HTAHSTKKEAINHTKKMLNIYTNFVENFF--SIPVIQ-----GIKTSSE----KFAGAEK 219

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            FC +  M                                                   +
Sbjct: 220 TFCIESIMQ------------------------------------------------DGK 231

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            I++    + G  +S      +    GK  YV   S+GI + R++ A+I +  D KG+I 
Sbjct: 232 SIQIATSHFLGQNFSKAFDVKYTTKKGKKKYVWATSWGI-STRLIGAMIMTHSDDKGLIL 290

Query: 341 PDSVAPFKISLINI-KAHDQVCRDACEKIY----ARLSKVGCDVFWDDMGEQI-GSQFAV 394
           P  +AP +I +I + K  +Q+     EKI     A + K G ++ +D       G +F  
Sbjct: 291 PPKIAPIQIVIIPVYKTQEQL--HLIEKIVFPLKASIEKKGINIKYDKRTYYTPGWKFNE 348

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            ++ G P+++ +G K +    VE+  R T  ++++S++++
Sbjct: 349 YEIQGIPIRITIGKKDLDRGTVEVVRRDTLEKKNISIKKL 388


>gi|34496803|ref|NP_901018.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|73919781|sp|Q7NYC6|SYT_CHRVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34102658|gb|AAQ59023.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 633

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 164/417 (39%), Gaps = 55/417 (13%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL ++  + H    + G+  W P G +   NV   +R + N  G  E+  P 
Sbjct: 237 EAEKRDHRKLGVQLDLFHLQDEAPGMVFWHPKGWQLWQNVEQYMRAKLNHEGYKEVRTPM 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +  A+LW  SG   +Y + M  + +   +     P +      IF S ++SYR+LP  + 
Sbjct: 297 MMDANLWERSGHAANYRENMF-ITESEKRDYAVKPMNCPGHVQIFNSGLRSYRDLPLRYA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  D + F  T +             + ++ R G   
Sbjct: 356 EFGSCHRNEPSGALHGIMRVRGFVQDDGHIF-CTEDQINQEAKDFHRLVMEVYDRFGFDK 414

Query: 193 IPMRAESGP---IGGDLSHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNS 247
           + ++    P   IG + + +    A+ G  +    C  ++ + P                
Sbjct: 415 VAIKLALRPEKRIGEESTWD---KAEEGMREALRACGVEWEELPGEG------------- 458

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                 A Y    + H   + D+L        R  + G +      + LP  + A +   
Sbjct: 459 ------AFYGPKIEYH---IKDAL-------GRSWQCGTL---QLDFMLPERLDAEYVAD 499

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +   + 
Sbjct: 500 DNSRKRPVMLHRAALGSLERFLGILIENHAGAFPLW---LAPVQMVVMNIT---EAQAEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +I   L K G  V  D   E+IG +     L   P Q+IVG K  +D  V ++ R
Sbjct: 554 AAEIAKELEKQGFRVELDLRNEKIGYKIREHSLQKLPYQIIVGDKEKADGLVAVRAR 610


>gi|229169303|ref|ZP_04297013.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614066|gb|EEK71181.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 645

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 174/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP +  +I + 
Sbjct: 506 ---TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQAQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|154490252|ref|ZP_02030513.1| hypothetical protein PARMER_00484 [Parabacteroides merdae ATCC
           43184]
 gi|154089144|gb|EDN88188.1| hypothetical protein PARMER_00484 [Parabacteroides merdae ATCC
           43184]
          Length = 651

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 156/413 (37%), Gaps = 65/413 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G +    +   ++  Q + G  ++  P +    L+V SG Y  YGK+  +  
Sbjct: 262 GLPLWLPRGTQLRLKLEDFLKRIQKKYGYQQVMTPHIGGKQLYVTSGHYAKYGKDSFQPI 321

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              +  +  +  P +     +IF+S  +SY++LP  F +    +R E      G+ R R 
Sbjct: 322 HTPQEGEEFLLKPMNCPHHCEIFKSFPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+      IF  L  ++   +              I L 
Sbjct: 382 FTQDDAHLF-CRPDQLKDEFLKVMDIIFIIFKALDFENFEAQ--------------ISLR 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D         K   D  I SE              E W    +A  +   EK   +  E 
Sbjct: 427 D---------KVNRDKYIGSE--------------ENWEKAESAIIEACQEKGLKAKIEY 463

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G D K H  V +     G
Sbjct: 464 GEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYTGEDNKKHRPVMIHRAPFG 523

Query: 321 AMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +M    AV+     GK  +W  PD VA   IS        +   D   ++  +L      
Sbjct: 524 SMERFVAVLIEHTGGKFPLWLTPDQVAILPIS--------EKFNDYAYEVKRQLEAEDLS 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           V  DD  E+IG +    +L   P  +IVG K   +++V ++ +  G +  M +
Sbjct: 576 VLVDDRNEKIGRKIRDTELKRIPYMLIVGEKEAENNEVSVRKQGEGDKGSMKI 628


>gi|15669423|ref|NP_248233.1| prolyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2501043|sp|Q58635|SYP_METJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1591870|gb|AAB99242.1| prolyl-tRNA synthetase (proS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 455

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 149/406 (36%), Gaps = 92/406 (22%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL----------------W 80
           KG   +LP G K       IIR   + +G  E   P L   DL                W
Sbjct: 24  KGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYW 83

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V  G     GK  L      D  +   PT E  +  + +  +K + +LP   YQI   FR
Sbjct: 84  VTHG-----GKTQL------DVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFR 132

Query: 141 DELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            E +    ++R RE +  K+A++   T E +++   +    Y + F  LG   IP     
Sbjct: 133 YETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLG---IPYLISK 189

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P                        ++  FP       FD I      ++         
Sbjct: 190 RP------------------------EWDKFPGAEYTMAFDTIFPDGRTMQ--------I 217

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           + VHN                          G  +S      F+   G   Y     YGI
Sbjct: 218 ATVHN-------------------------LGQNFSKTFEIIFETPTGDKDYAYQTCYGI 252

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGC 377
              RV+A++I    D KG+I P  VAP ++ ++ +  K  + +  +  ++IY +L K   
Sbjct: 253 SD-RVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKL-KGKF 310

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            V  DD   + G +F   ++ G PL++ VG K + + K+ +  R T
Sbjct: 311 RVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDT 356


>gi|256819829|ref|YP_003141108.1| threonyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581412|gb|ACU92547.1| threonyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 647

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 153/413 (37%), Gaps = 61/413 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + + A +R+ Q + G  ++  P +   +L+V SG +D YGK+  + 
Sbjct: 260 QGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTPHIGHKNLYVTSGHWDKYGKDSFQP 319

Query: 96  LADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +A  N+ +  +  P +     +I+ SH  SY++LP  F +    +R E      G+ R R
Sbjct: 320 IATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVR 379

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE     +  +    L +F  LG  +   +              + L
Sbjct: 380 CFTQDDAHIF-CTPEQLDDEFKHVIDLVLYVFGSLGFDNFTAQ--------------VSL 424

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D      +   D                       E W     A  +   EK    + E
Sbjct: 425 RDPENPTKYIGSD-----------------------ENWAKAENAIINAAKEKGLSYVIE 461

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +KGAD + H  V +     
Sbjct: 462 TGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFDLWYKGADNEMHRPVMIHRAPF 521

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+M    A++     G   +W +      +SL       +   +  +K+   L       
Sbjct: 522 GSMERFVAILLEHTAGNFPLWLNPSQAIVLSL------SEKYENYAQKVLRLLENSDIRT 575

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             D+  E +G +   A+    P  +IVG     +  V ++ R       MS+E
Sbjct: 576 LIDNRAETMGKKIREAETQKIPYMLIVGENEEKEGTVSVRKRGGEDLGSMSVE 628


>gi|42783753|ref|NP_981000.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206969938|ref|ZP_03230892.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218234238|ref|YP_002369371.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|228923319|ref|ZP_04086607.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954844|ref|ZP_04116864.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960844|ref|ZP_04122479.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048283|ref|ZP_04193851.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229072077|ref|ZP_04205286.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|229081828|ref|ZP_04214320.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229112040|ref|ZP_04241583.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229129859|ref|ZP_04258825.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229147134|ref|ZP_04275493.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|229152770|ref|ZP_04280953.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|229180894|ref|ZP_04308229.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|229192776|ref|ZP_04319734.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|229198724|ref|ZP_04325422.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|296505048|ref|YP_003666748.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|42739683|gb|AAS43608.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206735626|gb|EDZ52794.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218162195|gb|ACK62187.1| threonine--tRNA ligase [Bacillus cereus B4264]
 gi|228584746|gb|EEK42866.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228590615|gb|EEK48476.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228602451|gb|EEK59937.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228630590|gb|EEK87236.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228636383|gb|EEK92854.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228653550|gb|EEL09422.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228671363|gb|EEL26664.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228701416|gb|EEL53910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228711011|gb|EEL62977.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228723008|gb|EEL74385.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228798866|gb|EEM45845.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228804833|gb|EEM51432.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228836273|gb|EEM81626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296326100|gb|ADH09028.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|324328469|gb|ADY23729.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 645

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              ++ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 506 ---SYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|227534800|ref|ZP_03964849.1| threonyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187556|gb|EEI67623.1| threonyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 674

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 277 GLPYWMPNGATIRRVIERYIIDKEIADGYEHVYTPVLANLDLYKTSGHWDHYREDMFPPM 336

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VALDQVQEEFKKILRLIMDVYEDFNITDYSFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 442 PKNTEKYFDDDEMWTRSQSMLKGAMDDLKLDYYEAEGEAAFYGPKLDIQTKT---ALGND 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 499 ETMSTIQLD----FMLPERFNL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 550

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP +  LI +  ++ +  D   +I  ++   G  V  DD  E++G +  
Sbjct: 551 KGAFPTW---LAPTQAVLIPV--NNDLHLDYVNRIKKQMLVAGLRVKVDDRNEKMGYKIR 605

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  V+VG K ++D+ V ++
Sbjct: 606 EAQTKKIPYTVVVGDKELNDAAVSVR 631


>gi|254477067|ref|ZP_05090453.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214031310|gb|EEB72145.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 648

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 168/430 (39%), Gaps = 59/430 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K  L +L+E    A+    KL    G+ H  + + G   W P G +    +   +R  Q+
Sbjct: 234 KAHLTMLEEA---AKRDHRKLGKEMGLFHMQEEAPGQVFWHPNGWRIYTQLQDYMRRMQD 290

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-----IYGPTHEEVMTDI 117
           R G +E++ P +    LW +SG +D Y + M  +    D A         P +      +
Sbjct: 291 RDGYVEVNTPQVVDRKLWEKSGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQV 350

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   +KSYR+LP    +     R E      G+MR R F   D + F    E    S   
Sbjct: 351 FNQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIF--CAEDQITSETA 408

Query: 177 MFVSYL-RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            F+++L +++  LG  +  ++  + P   IG D + + +  A  GE    C     DF  
Sbjct: 409 KFIAFLSKVYADLGFHNWTIKLSTRPEKRIGSDETWDHMEQA-LGEA---CKAAGYDF-- 462

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          I+E   A Y    +     L D++  N +     ++         
Sbjct: 463 --------------EILEGEGAFYGPKLEF---TLTDAIGRNWQCGTLQVDA-------- 497

Query: 293 KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             +LP  + ATF G DG  H  V +    +G+      ++   H GK   W   +AP ++
Sbjct: 498 --NLPERLEATFIGQDGAKHRPVMLHRACLGSFERFIGILIEEHAGKLPFW---LAPRQV 552

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + +I +      D   ++  +L   G     D   E+I  +     +   P+ + VG++
Sbjct: 553 VVASITSE---ADDYVLEVVEQLKAAGVRAEADMRNEKINYKVREHSVGKVPVILAVGAR 609

Query: 410 FVSDSKVEIK 419
            V +  V ++
Sbjct: 610 EVEERTVSVR 619


>gi|163942310|ref|YP_001647194.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229013779|ref|ZP_04170907.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|229062260|ref|ZP_04199581.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|229135411|ref|ZP_04264199.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|163864507|gb|ABY45566.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228648054|gb|EEL04101.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228716988|gb|EEL68669.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228747448|gb|EEL97323.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 645

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 174/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP +  +I + 
Sbjct: 506 ---TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQAQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|118586378|ref|ZP_01543828.1| threonyl-tRNA synthetase 1 [Oenococcus oeni ATCC BAA-1163]
 gi|118433195|gb|EAV39911.1| threonyl-tRNA synthetase 1 [Oenococcus oeni ATCC BAA-1163]
          Length = 663

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 169/410 (41%), Gaps = 43/410 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   + E++ + G + +  P + + DL+  SG +D Y  +M    
Sbjct: 267 GLPVWLPNGAAIRRTIEDYLVEKERQNGYMNVYTPVVSNLDLYKRSGHWDHYRDDMFPAM 326

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRFGVMRSREF 155
             ND + +   P +     +IF    +SYR+LP+   +  Q+   ++     G+ R RE 
Sbjct: 327 TANDGEQLELRPMNCPSHIEIFEHEPRSYRDLPYRIAEFGQMHRWEKSGALTGLSRVREM 386

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLA 214
            + D ++  + PE  +  +  +      ++H  G               D  + F +   
Sbjct: 387 TLNDGHTV-VAPEQVEPEFKGILQLIRDVYHDFGFT-------------DQDYRFRLSYR 432

Query: 215 DTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           D   T+ +   D M +    +     DD+       E   A Y    D+   +   +L  
Sbjct: 433 DPKNTKKYYDDDAMWEHAQAALKRAMDDMGLDYFEAEGEAAFYGPKLDI---QFKTALGN 489

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESS 332
            + +S   ++      F  KY+        G DGKDH   +   G +G M    A +   
Sbjct: 490 EETMSTIQLDFLLPERFDMKYT--------GEDGKDHRPVLIHRGVVGTMERFVAFLIEK 541

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G+   W   +AP +  +I  N  AH    R+    IY++L K G  +  D+  E++G 
Sbjct: 542 YKGQFPTW---LAPVQAVVIPVNYGAHGDYARN----IYSKLMKDGRRIKLDNRDEKLGY 594

Query: 391 QFAVADL-LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL---EEVIN 436
               A + L  P  ++VG + + D+ V ++ R +   ++M +   EE+IN
Sbjct: 595 LIRDAQVNLKTPYILVVGDQELRDNSVTVRFRGSDQTKEMKIDEFEEMIN 644


>gi|325265785|ref|ZP_08132472.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982768|gb|EGC18393.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 637

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/396 (20%), Positives = 152/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R E +  G  E+  P +     W +SG + +Y  
Sbjct: 255 LQDEAPGMVFWHPRGWTLWQVIEQHMRRELDAAGYREVKTPQIMDKTFWEKSGHWANYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   A    +  +  P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMFLTASEKREYAV-KPMNCPGHVQIFNNTLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F+  DA+ F  T +       K  +  ++I+ + G + + ++    P     S E 
Sbjct: 374 RVRGFVQDDAHIF-CTEDQIAEETRKFNLLVMKIYQQFGFEHVSVKLSLRPEQRAGSDEI 432

Query: 211 IVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              A+ G  +    C  ++ + P                      A Y    + H   + 
Sbjct: 433 WDKAEQGLRDALTACGVEWQELPGEG-------------------AFYGPKVEYH---IK 470

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVV 325
           D+L        R  + G I      + LP  + A +   D  K   V +    +G++   
Sbjct: 471 DAL-------GRSWQCGTI---QLDFVLPERLDAEYVAEDNSKKRPVMLHRAILGSLERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G   +W   +AP ++ ++NI        D C ++  +L   G     D   
Sbjct: 521 IGILIEEHAGSFPLW---LAPVQMVVMNITEKQA---DYCREVVEKLKAAGFRAEADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +      + +P Q++VG K + + +V ++ +
Sbjct: 575 EKIGYKIRDNSQMRYPYQIVVGDKEMENGQVAVRRK 610


>gi|241758603|ref|ZP_04756718.1| threonine--tRNA ligase [Neisseria flavescens SK114]
 gi|241321255|gb|EER57427.1| threonine--tRNA ligase [Neisseria flavescens SK114]
          Length = 637

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 149/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNVAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVDEARAFNELLV---RIYKQFGFHDVAVKLSLRPEQRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           E    A+ G      +       +P E   +   I     +++   W         V  E
Sbjct: 431 EVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLNAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE +H G   +W   +AP ++ ++NI  +     D C ++  +L   G  V  D   
Sbjct: 522 GILIE-NHAGSFPLW---LAPVQMVIMNITENQA---DYCREVAVKLQAAGFRVELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|291531005|emb|CBK96590.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           siraeum 70/3]
          Length = 639

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 166/437 (37%), Gaps = 49/437 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T  I     G   +LP G    + +    R+   R G
Sbjct: 232 YLNMIEEAKKRDHRKLGKELELFT--IMDEGPGFPFFLPKGMTLKNTLIDYWRQIHTRDG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            +E+S P + +  LW  SG +D Y + M   + D  + A+   P +      +++S  +S
Sbjct: 290 YVEISTPIMLNRQLWETSGHWDHYKENMYTTVIDGTEFAI--KPMNCPGGILVYKSKPRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R E      G+MR R F   DA+ F +TP+        +      
Sbjct: 348 YRDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIF-MTPDQITDEIKGVVRLIDE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K                  + V   T       S++  D          D + 
Sbjct: 407 VYKLFGFK------------------YHVELSTQPEDSMGSQEDWDMATEGLRKALDSLG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SAT 301
               + E   A Y    D H E   DSL        R  + G I      + LPM     
Sbjct: 449 LPYVVNEGDGAFYGPKIDFHLE---DSL-------GRTWQCGTI---QLDFQLPMRFELE 495

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQ 359
           + GADG+ H  + +     G++     ++     G   IW   +AP ++ L+ I   H++
Sbjct: 496 YTGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPIADRHNE 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  K+ A L K G  V  D   E+IG +   A L   P  +++G K V    V I+
Sbjct: 553 F----TSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETENVSIR 608

Query: 420 HRLTGIREDMSLEEVIN 436
            R  G    MS+ +  +
Sbjct: 609 CRKRGDIGTMSVSDFCD 625


>gi|304387978|ref|ZP_07370150.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304337977|gb|EFM04115.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 643

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 261 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 321 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 379

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 380 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEQRAGSD 436

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 437 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 496

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 497 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 527

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE ++ G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 528 GILIE-NYAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 580

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 581 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 616


>gi|315225228|ref|ZP_07867045.1| threonine--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314944911|gb|EFS96943.1| threonine--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 646

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 153/413 (37%), Gaps = 61/413 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + + A +R+ Q + G  ++  P +   +L+V SG +D YGK+  + 
Sbjct: 260 QGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTPHIGHKNLYVTSGHWDKYGKDSFQP 319

Query: 96  LADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +A  N+ +  +  P +     +I+ SH  SY++LP  F +    +R E      G+ R R
Sbjct: 320 IATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVR 379

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE     +  +    L +F  LG  +   +              + L
Sbjct: 380 CFTQDDAHIF-CTPEQLDDEFKHVIDLVLYVFGSLGFDNFTAQ--------------VSL 424

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D      +   D                       E W     A  +   EK    + E
Sbjct: 425 RDPENPTKYIGSD-----------------------ENWAKAENAIINAAKEKGLSYVIE 461

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +KGAD + H  V +     
Sbjct: 462 TGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFDLWYKGADNEMHRPVMIHRAPF 521

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+M    A++     G   +W +      +SL       +   +  +K+   L       
Sbjct: 522 GSMERFVAILLEHTAGNFPLWLNPSQAIVLSL------SEKYENYAQKVLRLLENSDIRT 575

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             D+  E +G +   A+    P  +IVG     +  V ++ R       MS+E
Sbjct: 576 LIDNRAETMGKKIREAETKKIPYMLIVGENEEKEGTVSVRKRGGEDLGSMSVE 628


>gi|297619256|ref|YP_003707361.1| prolyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297378233|gb|ADI36388.1| prolyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 481

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 158/406 (38%), Gaps = 70/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG   +LP G K       I+R+  + T   E   P L    L  + G +   +  E+  
Sbjct: 46  KGCGVYLPYGFKIRRYSFEILRDLLDSTKHDETLFPMLIPETLLAKEGEHIKGFEDEVFW 105

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +  D  +   PT E  +  + +  +K + +LPF  YQ    FR E +    ++R
Sbjct: 106 VTHGGKNELDVRLALRPTSETAIYYMMKQWLKVHTDLPFKIYQTVNTFRYETKHTRPLIR 165

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +   +A++   T E  +    +    Y   F  L   SIP+     P         
Sbjct: 166 LREIMTFNEAHTAHSTKEECEAQVKEGMYVYSSFFEAL---SIPVLISKRP--------- 213

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP     T +D I                            
Sbjct: 214 ---------------EWDKFPGAEYTTAYDTI---------------------------- 230

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+ K      +++G +   G  ++      F+ ADG+  Y     YGI   RV+A++I 
Sbjct: 231 YPDGK-----TMQIGTVHNLGQHFATTFDLEFETADGEKDYAYQTCYGISD-RVIASIIA 284

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D  G++ P  VAP +I++I +  K  ++   +   +IY +L K    +  D    + 
Sbjct: 285 IHGDKNGLLIPPKVAPVQIAMIPLLFKGKEEKVLEKANEIYDKLKKF-VRIELDTRDIRP 343

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   +L G PL++ +G + + + KV I  R    + D+++E++
Sbjct: 344 GRKFNDWELKGVPLRIELGPRDLENGKVMIFRRDKNEKFDIAIEDL 389


>gi|217962055|ref|YP_002340625.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222098038|ref|YP_002532095.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|229141301|ref|ZP_04269839.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|217064460|gb|ACJ78710.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221242096|gb|ACM14806.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|228642082|gb|EEK98375.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 645

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              ++ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 506 ---SYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGMRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|116495184|ref|YP_806918.1| threonyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122263399|sp|Q037Z6|SYT_LACC3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116105334|gb|ABJ70476.1| Ser-tRNA(Thr) hydrolase [Lactobacillus casei ATCC 334]
          Length = 657

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 260 GLPYWMPNGATIRRVIERYIIDKEIADGYEHVYTPVLANLDLYKTSGHWDHYREDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQEEFKKILRLIMDVYEDFNITDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 425 PKNTEKYFDDDEMWTRSQSMLKGAMDDLKLDYYEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFNL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP +  LI +  ++ +  D   +I  ++   G  V  DD  E++G +  
Sbjct: 534 KGAFPTW---LAPTQAVLIPV--NNDLHLDYVNRIKKQMLVAGLRVKVDDRNEKMGYKIR 588

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  V+VG K ++D+ V ++
Sbjct: 589 EAQTKKIPYTVVVGDKELNDAAVSVR 614


>gi|312863291|ref|ZP_07723529.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311100827|gb|EFQ59032.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 648

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 158/399 (39%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEDEFKKILQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
              +   D  +   +   D M      EN         DD+       E   A Y    D
Sbjct: 422 ---LSYRDPADKHKYFDNDEM-----WENAQRMLKAAVDDMGVEYYEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QVKTALGKEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++   L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKELRDRGVRAE 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616


>gi|295399484|ref|ZP_06809466.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109958|ref|YP_003988274.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978950|gb|EFG54546.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215059|gb|ADP73663.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 644

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 169/403 (41%), Gaps = 36/403 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y + M   
Sbjct: 264 QGLPLWLPKGATVRRIIERYIVDKEIELGYQHVYTPVLGSVELYKTSGHWDHYKENMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I+++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNEQLVLRPMNCPHHMMIYKNKIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFKRVVNLILEVYKDFGLDEYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             + + +   D M     S   +  D + L     E   A Y    DV   ++  +L ++
Sbjct: 429 PHDKEKYYDDDEMWEKAQSMLREAMDELGLEYYEAEGEAAFYGPKLDV---QVRTALGKD 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYIGEDGKPHRPVVIHRGVVSTMERFVAFLIEEY 537

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +     +  D   K+   L   G  V  D   E+IG + 
Sbjct: 538 ---KG-AFPTWLAPVQVEVIPVSPEAHL--DYAYKVKETLQSQGFRVEVDGRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A +   P  ++VG K ++++ V ++       E M+L + I
Sbjct: 592 REAQIQKIPYMLVVGDKEMAENAVNVRKYGEQKSETMALADFI 634


>gi|251772034|gb|EES52606.1| threonyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 587

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 157/407 (38%), Gaps = 43/407 (10%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I   +   RT  + ++  G+  WLP G +    +  I +   +R G   +  P +   D
Sbjct: 192 KIGKEQGFFRT--LDENGAGMVLWLPRGARIRRVIEEIWKTRHDRHGYQYVYTPHIARLD 249

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW +SG +D Y + M    +         P +      IF+  +KSYR+LP    ++   
Sbjct: 250 LWKQSGHWDFYRESMFSPMEIEGSEFELKPMNCPFHILIFKEAVKSYRDLPVRLAELGTV 309

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           +R E      G++R R F   DA+ F   PE       K+      +    G  +  +  
Sbjct: 310 YRYERSGTLHGLLRVRGFTQDDAHIF-CRPEDIASEIGKVLTLVDEMLLPFGFTNRSVYL 368

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPY 256
            + P G   S E   LA TG  +       + + I P E   +   I +           
Sbjct: 369 STRPEGSVGSDENWALA-TGALEEALKNAGIPYEIDPGEGVFYGPKIDM----------- 416

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMG 315
                    K  D L    ++S   ++    F    K+ +    T++ + G D   + + 
Sbjct: 417 ---------KFHDVLGRTWQLSTIQVD----FNLPEKFDI----TYRDSSGNDVRPIMIH 459

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
              +G++     ++     G   +W   +AP +++++ I   H    R    KI   L +
Sbjct: 460 RALLGSVERFFGILVEHFKGAFPLW---LAPEQVTILPIADRHIPYAR----KIAETLEQ 512

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G  V  D   E+IG++   A L+  P   ++G +   D  + I+HR
Sbjct: 513 EGVRVVTDFRNEKIGAKIRDAQLMKIPQMWVLGDREAQDETISIRHR 559


>gi|254674303|emb|CBA10087.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 637

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEQRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE ++ G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 522 GILIE-NYAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|261392911|emb|CAX50492.1| threonyl-tRNA synthetase (threonine--tRNA ligase; ThrRS) [Neisseria
           meningitidis 8013]
 gi|325203807|gb|ADY99260.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 637

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R+E N  G  E+  P +     W +SG +++Y  
Sbjct: 255 LQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +     +     P +      IF + ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++ V   RI+ + G   + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEDQIVSEARAFNELLV---RIYKQFGFHDVSVKLSLRPEQRAGSD 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDVHNE 265
           +    A+ G  +   +       +P E   +   I     +++   W         V  E
Sbjct: 431 DVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVRDALGRSWQCGTLQLDFVLPE 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L           AR + +                         H   +GS      R +
Sbjct: 491 RLDAEYVTENNDRARPVML-------------------------HRAILGSL----ERFI 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE ++ G   +W   +AP ++ ++NI  +     D C ++ A+L   G  V  D   
Sbjct: 522 GILIE-NYAGSFPLW---LAPVQLVIMNITENQA---DYCREVAAKLQAAGFRVELDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +        FP Q++VG K   ++KV ++ +
Sbjct: 575 EKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRK 610


>gi|312113796|ref|YP_004011392.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218925|gb|ADP70293.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 640

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R      + + + G   W P G      + A +R  Q
Sbjct: 230 KSYLTMLEE----AEKRDHRRLGREMDLFHLQEEAPGSVFWHPKGWTVFQALIAFMRRRQ 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           + +G +E++ P +    LW +SG ++ +G+ M      +++     P +      IF++ 
Sbjct: 286 HASGHVEVNSPDMMERKLWEQSGHWEKFGENMFVTETPDERVFCCKPMNCPGHIQIFKNG 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R E      G+MR R F   DA+ F  TPE        +   
Sbjct: 346 LKSYRDLPLRIAEFGKVHRYEPSGALHGIMRVRHFTQDDAHIF-CTPEQITEECVHLNSL 404

Query: 181 YLRIFHRLGLKSIPMRAESGP---IGGD 205
            L I+   G + + ++  + P   +G D
Sbjct: 405 LLSIYRDFGFEDVVIKLSTRPEKRVGSD 432


>gi|260911583|ref|ZP_05918168.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634289|gb|EEX52394.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 654

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 153/416 (36%), Gaps = 65/416 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R+ Q R G  E+  P + S +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTELRLRLQDMLRKIQKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     ++F    +SY++LP    +    +R E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVFAWKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   PE  K+ + ++      +F      +   +              I L
Sbjct: 383 SFTQDDAHIF-CRPEQVKNEFLRVMDIIQAVFKIFQFDNFEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D   T  +   D                       E W     A  D   EK  D+   
Sbjct: 428 RDPNNTTKYIGSD-----------------------EVWEESEQAIIDACKEKGLDAKIA 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFKLEYTAEDNTKKTPVMVHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+M   +AV+     G   +W  PD VA   IS        +   D  +++   L  VG 
Sbjct: 525 GSMERFSAVLIEHTTGHFPLWLIPDQVAILPIS--------EKFNDYAQRVAKYLDSVGV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               D   E+IG +    ++   P  VIVG K   +  V ++ +  G +  M++EE
Sbjct: 577 RATLDVRNEKIGRKIRDNEIKRVPYMVIVGEKEAEEGLVSMRKQGGGEQATMTMEE 632


>gi|119719726|ref|YP_920221.1| prolyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|152112960|sp|A1RYD8|SYP_THEPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119524846|gb|ABL78218.1| prolyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 482

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 4/163 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++      G +++   + TF   DGK  YV    YG G  R+ AA+I    D KG+
Sbjct: 222 GRVLQISSTHDLGQRFAKAFNVTFLDKDGKRKYVWQTCYGPGIWRITAALIAIHGDDKGL 281

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P +VAP ++ ++ I   ++  +   + C K+ A + + G  V+ D   E   G +F  
Sbjct: 282 VLPMNVAPIQVVIVPIYYKESDKERVLEKCRKLEAMIREAGYRVYLDAREEYTPGWKFND 341

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++ VG + V    V +  R   ++E ++  E+I++
Sbjct: 342 WELKGVPVRLEVGVREVETGTVTVFRRDLRVKEKVADSELISH 384


>gi|148261186|ref|YP_001235313.1| threonyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|166223313|sp|A5G0L2|SYT_ACICJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146402867|gb|ABQ31394.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidiphilium
           cryptum JF-5]
          Length = 640

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 161/429 (37%), Gaps = 49/429 (11%)

Query: 17  DAEIASHKLMLRT-GMIHQHSKGIYS--WLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R   + H   + + S  W   G +    V A +R  Q   G IE+  P 
Sbjct: 238 EAERRDHRKIGRQMDLFHMQEEAVGSVFWHEKGWRLYRTVEAYMRRRQEEFGYIEVRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG +D+Y   M +   +  DK +   P +      IF   ++SYR LP   
Sbjct: 298 LLDRKLWEASGHWDNYRSHMFIAEVEDEDKVLAVKPMNCPCHVQIFNHGLRSYRELPLRM 357

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGL 190
            +     R E      G+MR R F   DA+ F    E         FV  L R++   G 
Sbjct: 358 AEFGACHRYEPSGALHGIMRVRAFAQDDAHIF--CTEDQIADETVRFVEMLRRVYADFGF 415

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDFD---DIISLN 246
               ++    P     S E    A+    +  C    ++F + P E   +    + +  +
Sbjct: 416 PEFAVKFADRPTPRSGSDEVWDKAEAA-LRSACETAGVEFTVNPGEGAFYGPKLEFVLRD 474

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +I   W         V  E+L  S    +   AR + +                      
Sbjct: 475 AIGRDWQCGTLQVDFVLPERLDASYVTAESGRARPVML---------------------- 512

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
              H   +GS+     R +  +IE+   G+  +W   +AP + ++ +I        D  E
Sbjct: 513 ---HRAIVGSF----ERFIGILIENCA-GRFPLW---LAPTQAAVASIVTD---ANDYAE 558

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + ARL + G  V  D   E+I ++     L   P  ++VG +      V I+   +  +
Sbjct: 559 TVAARLKEAGLAVATDTRNEKINAKVRDLSLALVPNILVVGRREAEQQTVSIRRLGSDKQ 618

Query: 427 EDMSLEEVI 435
           + M+L+E I
Sbjct: 619 DSMTLDEAI 627


>gi|157690994|ref|YP_001485456.1| prolyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157679752|gb|ABV60896.1| proline--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 477

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 135/328 (41%), Gaps = 68/328 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  + +++ I SYR+LP  + Q    +++    RP    +R+ EFL ++ ++   
Sbjct: 113 PTSEVLFAEHYKNIIHSYRDLPKLYNQWANVVRWEKTTRP---FLRTLEFLWQEGHTCHE 169

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T + +     +M   Y  +   L   +IP                ++     E + F   
Sbjct: 170 TEQEAIEETERMLHIYASLCEEL--LAIP----------------VIKGRKTEKEKFAGA 211

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
            F                            Y   S +H+               + ++  
Sbjct: 212 RFT---------------------------YTVESLMHD--------------GKALQTA 230

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              +FG  ++      F   +GK  +VQ  S+G    R++ A+I    D +G++ P ++A
Sbjct: 231 TSHFFGNGFAKAFGIEFLNREGKLEHVQQTSWGF-TTRIIGAMIMVHGDDRGLVLPPNIA 289

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           P ++ ++ I +H +   D   ++  RL+++   D+  D   +Q G +F   ++ G PL+V
Sbjct: 290 PTQVRIVPIASHKEGVLDHAYELKDRLTRIARADI--DASDKQPGWKFNECEMQGIPLRV 347

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            VG K +   +V +  R TG ++ ++L+
Sbjct: 348 EVGPKDIEKGQVMLARRDTGEKQAVTLD 375


>gi|162147243|ref|YP_001601704.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544293|ref|YP_002276522.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|189083610|sp|A9HFP5|SYT_GLUDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161785820|emb|CAP55391.1| Threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531970|gb|ACI51907.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 641

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 153/409 (37%), Gaps = 55/409 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W P G +    +   +R  Q R G  E+  P L    LW  SG +D Y +
Sbjct: 256 IQEEAVGSIFWHPKGWRLYTALQDYMRRAQTRGGYQEVRTPQLVDRALWEASGHWDKYRE 315

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M +   +  DK +   P +      IFR  ++SYR LP    +     R E      G+
Sbjct: 316 HMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSYRELPLRMAEFGACHRYEPSGALHGI 375

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSH 208
           MR R F   DA+ F    E    +    FV  L  ++  LG +S  ++    P     S 
Sbjct: 376 MRVRSFTQDDAHIF--CTESQIAAETARFVRMLAEVYADLGFESFRVKFADRPEQRAGSD 433

Query: 209 EFIVLADTGETQVFCSKDFMDFPI-PSENTDFD---DIISLNSIVEQWTAPYAATSDVHN 264
           E    A+    +  C    +++   P E   +    + +  ++I   W         V  
Sbjct: 434 ETWDRAEGALIEA-CRLAGVEYEYNPGEGAFYGPKLEFVLRDAIGRDWQCGTLQVDYV-- 490

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMR 323
                 LPE                        + A+F G D   H   M    I G+  
Sbjct: 491 ------LPER-----------------------LDASFVGEDSARHRPVMLHRAILGSFE 521

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVF 380
               ++   H G+  +W   +AP ++ + +I        DA    E++   L++ G  V 
Sbjct: 522 RFLGILIEQHAGRFPLW---LAPVQVVVASI------VTDAAPYAEQVAETLTQAGLVVE 572

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            D   E+I ++     L   P+ ++VG K   D  V I+ RL G  +++
Sbjct: 573 TDIRNEKINAKVREHSLARVPVILVVGRKEAEDGTVAIR-RLGGAAQEV 620


>gi|120434969|ref|YP_860655.1| threonyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|117577119|emb|CAL65588.1| threonyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 667

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 161/406 (39%), Gaps = 39/406 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + +   +++ Q + G   +  P + S +L+V SG Y  YG++  + 
Sbjct: 278 QGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVSPHIGSKELYVTSGHYAKYGEDSFQP 337

Query: 96  LADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           ++  N+ +  +  P +     +++ +   SYR+LP  F +    +R E      G+ R R
Sbjct: 338 ISTPNEGEEFMLKPMNCPHHCEMYNASSWSYRDLPKRFAEFGTVYRYEQSGELHGLTRVR 397

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + PE     + K+    L +F  LG +    +              + L
Sbjct: 398 GFTQDDAHIFCM-PEQLDEEFKKVIDLTLYVFSSLGFEDFTAQ--------------VSL 442

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D       S   +  D   LN +VE   A +            D +  
Sbjct: 443 RDPDNKEKYIGSDDAWEKAESAIINAADEKGLNYVVETGEAAFYGPK-------LDFMV- 494

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIE 330
            K    R  ++G I      Y+LP     T+KG+D + H  V +     G+M    A++ 
Sbjct: 495 -KDALGRSWQLGTI---QVDYNLPERFDLTYKGSDNESHRPVMIHRAPFGSMERFIAILL 550

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
               G   +W   + P +  ++++    +      +K+   L         D+  E IG 
Sbjct: 551 EHTGGNFPLW---LMPEQAIILSLS---EKYEKYSQKVLTLLENNEIRALADNRNETIGK 604

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +   A++  +P  +IVG +   D  + ++    G    M +E+  N
Sbjct: 605 KIREAEVNKYPYMLIVGEQEAKDGTISVRKHSEGDLGTMKIEDFAN 650


>gi|297583666|ref|YP_003699446.1| threonyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297142123|gb|ADH98880.1| threonyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 649

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 169/400 (42%), Gaps = 37/400 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I + + R G   +  P L S DL+  SG +D Y  +M  +
Sbjct: 264 QGLPLWLPKGATVRRQVERYIVDIEERLGYDHVYTPVLGSVDLYKTSGHWDHYQDDMFPV 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      I+++   SYRNLP    ++    R E+     G+ R R  
Sbjct: 324 LQMDNEDLVLRPMNCPHHMMIYKNEKHSYRNLPLRIAELGTMHRHEMSGALAGLQRVRAM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++      ++    +K    R         LS+      D
Sbjct: 384 TLNDAHIF-CRPDQLKDEFIRVVELIQAVYKDFQIKDYYFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             + + +   D M     +   +  D + +  I  +   A Y    DV   ++  +L ++
Sbjct: 429 PEDKEKYVDNDEMWEKAQAMLKEAVDEMGVEYIEADGEAAFYGPKLDV---QVKTALGKD 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F+   ++ L    T+ G DGKDH   +   G+ +   R VA ++E  
Sbjct: 486 ETLSTVQLD----FHLPNRFDL----TYTGEDGKDHRPVVIHRGVVSTMERFVAFLLEEY 537

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP +  LI +   + V  D   ++   L + G  V  D   E++G + 
Sbjct: 538 ---KG-AFPTWLAPVQAELIPV---NDVHLDYVRQVEDELKRAGVRVHVDVRNEKLGYKI 590

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             A +   P  +++G +   ++ V ++       E++SL+
Sbjct: 591 REAQMQKVPYLLVLGDQERDNASVNVRRYGQKDSEEVSLD 630


>gi|167762197|ref|ZP_02434324.1| hypothetical protein BACSTE_00549 [Bacteroides stercoris ATCC
           43183]
 gi|167699840|gb|EDS16419.1| hypothetical protein BACSTE_00549 [Bacteroides stercoris ATCC
           43183]
          Length = 497

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 141/341 (41%), Gaps = 65/341 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I SYR+LP    Q    FR E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           +    T   ++    +  V  L ++     K + +    G                    
Sbjct: 177 H----TAHATREEAEEEAVRMLNVYSEFAEKYMAVPVVKG-------------------- 212

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                      + S N  F   ++  +I                        E      +
Sbjct: 213 -----------VKSANERFAGALNTYTI------------------------EAMMQDGK 237

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G++ 
Sbjct: 238 ALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGLVL 296

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ ++ I  + ++     EK   I A+L  +G  V +D+   ++ G +FA  +
Sbjct: 297 PPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKAMGISVKYDNADNKRPGFKFADYE 356

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           + G P+++++G + + ++ +E+  R T  +E  S + +  Y
Sbjct: 357 VKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEY 397


>gi|228472897|ref|ZP_04057654.1| proline--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275479|gb|EEK14256.1| proline--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 492

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 142/350 (40%), Gaps = 65/350 (18%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK M+    + ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   
Sbjct: 105 GKLMVDPEAKLEEELIVRPTSEAIIWNTYKNWIQSYRDLPLLINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E +     KM   Y     +     +P               
Sbjct: 164 LRTAEFLWQEGHTAHATREEAVEEAQKMNDVYATFVEK--YMGVP--------------- 206

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            ++     E++ F                 DD   + ++++   A  A TS         
Sbjct: 207 -VIRGHKTESERFAGA--------------DDTYCIEALMQDGKALQAGTS--------- 242

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                              + G  ++      F   +G   YV   S+G+ + R++ A+I
Sbjct: 243 ------------------HFLGQNFAKAFEVKFANKEGVLDYVWASSWGV-STRLMGALI 283

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDV-FWDDMG 385
            S  D  G++ P  +AP ++ ++ I   +   Q  R+    +   L +    V F DD  
Sbjct: 284 MSHSDDNGLVLPPLLAPIQVVIVPIYKGEEQLQAIRERITPLMKALKERNISVKFDDDDT 343

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           ++ G +F   +L G P+++ +G + + ++  E+  R T  +E +S + +I
Sbjct: 344 QKPGFKFHEYELKGVPVRLAIGQRDLENNTYEVSRRDTLTKESVSGDNII 393


>gi|152976959|ref|YP_001376476.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025711|gb|ABS23481.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 643

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 173/424 (40%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 227 KKAELDEHMRMLEEAKERDHRKLGKELKLFTNNQKVGQGLPLWLPKGATIRRIIERYIVD 286

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M      +++ ++  P +      +++
Sbjct: 287 KEVSLGYNHVYTPVLGSRELYETSGHWNHYRDGMFPSMQMDNEELVLRPMNCPHHMMVYK 346

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 347 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 405

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 406 NLTLEVYKDFGLENYSFR---------LSYR-----DPEDTKKYYADDEMWEKAQGMLKE 451

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L     E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 452 AMDEMGLEYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 503

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 504 ---TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 556

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 557 P--QVHLDYAKKVQEELQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENG 614

Query: 416 VEIK 419
           V ++
Sbjct: 615 VNVR 618


>gi|294101704|ref|YP_003553562.1| threonyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616684|gb|ADE56838.1| threonyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 633

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 151/398 (37%), Gaps = 44/398 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G   L+ +    R+   + G  E+  P +    LW+ SG +D Y ++ +   + ++  
Sbjct: 263 PKGMAILNKLTEFWRQVHEKNGYCEIRTPLILDRSLWIRSGHWDHY-RDNMYFTEIDEMP 321

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      I++S I+SYR+LP    ++ +  R E      G+MR R F   DA+ 
Sbjct: 322 FAIKPMNCPGGILIYKSQIRSYRDLPLRMAELGIVHRHERSGVLHGLMRVRCFTQDDAHL 381

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           +  TPE  K     +      I+  +      M   + P     S E   +A+T   +  
Sbjct: 382 Y-CTPEQVKDEIKGIMYLCQYIYRDIFGFKYTMELSTRPENSMGSEEQWNIAETALKEAL 440

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              + M + +   +  F                Y    D H E              R  
Sbjct: 441 EETN-MQYRVNPGDGAF----------------YGPKIDFHLEDCI----------GRTW 473

Query: 283 EVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGI 338
           + G I   F    K+ L    TF GADGK+H  V +    +G++     ++     G   
Sbjct: 474 QCGTIQLDFQMPEKFDL----TFVGADGKEHRPVMLHRTILGSLERFFGILIEQFAGAFP 529

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            W   +AP ++ L+ I    +   D    + A+L      V  D   E++G +   A + 
Sbjct: 530 YW---LAPVQVRLLPI---SEDFLDYARLVQAKLVANNIRVEIDSRDEKLGKKIRDAQIQ 583

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             P   ++G K V+  +V  + R  G    MS+   I+
Sbjct: 584 KIPYMAVIGEKEVASDQVAPRERSRGDLGAMSINSFID 621


>gi|322411327|gb|EFY02235.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 647

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWEHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIRDEFKRTLQLIIDVYEDFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
           +      D  +T  +   D M      EN         DD+       E   A Y    D
Sbjct: 422 YR-----DPEDTHKYYDNDEM-----WENAQAMLKGAMDDMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   +I   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEIAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            DD  E++  +   +     P Q+IVG K + +  V ++
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVR 614


>gi|296117435|ref|ZP_06836023.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976037|gb|EFG82827.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 642

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 167/440 (37%), Gaps = 61/440 (13%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R  G+ H  + + G   W P G +    +   +R  Q R G  E+  P 
Sbjct: 238 EAERRDHRRIGREMGLFHIQEEAVGQIFWHPKGWRLYSVLQDYMRRAQTRNGYQEVRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG +D Y + M +   +  DK +   P +      IFR  ++SYR LP   
Sbjct: 298 LVDRGLWEASGHWDKYRQHMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSYRELPLRM 357

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGL 190
            +     R E      G+MR R F   DA+ F    E         FV  L  ++  LG 
Sbjct: 358 AEFGACHRYEPSGALHGIMRVRGFTQDDAHIF--CTEEQIADETARFVRMLSAVYQDLGF 415

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +                H  +  AD                 P +    DD    +    
Sbjct: 416 E----------------HFRVKFADR----------------PEQRAGSDDTWDRSENAL 443

Query: 251 QWTAPYAATSDVHN--EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFK 303
           +     A     HN  E  F   P+ + V    I  G  +  GT    Y +P  + AT+ 
Sbjct: 444 KEACHMAGVEYEHNPGEGAFYG-PKLEFVLRDAI--GRDWQCGTLQVDYVMPERLDATYV 500

Query: 304 GADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVC 361
           G D   H   M    I G+      ++   H G+  +W   +AP ++ + +I    +   
Sbjct: 501 GEDSARHRPVMLHRAILGSFERFLGILIEQHAGRFPMW---LAPVQVVVASIVTDAEPYA 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R+  EK+ A    V  DV      E+I ++     L   P+ ++VG K   +  V ++ R
Sbjct: 558 REVVEKLQAAGVVVEADV----RNEKINAKIREHSLARVPVILVVGRKEAEERTVALR-R 612

Query: 422 LTG-IREDMSLEEVINYASH 440
           L G  +E + L+E +   +H
Sbjct: 613 LGGKAQEIVPLDEAVTALAH 632


>gi|226355500|ref|YP_002785240.1| threonyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|259516378|sp|C1D0W2|SYT_DEIDV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226317490|gb|ACO45486.1| putative threonine--tRNA ligase (threonyl-tRNA synthetase)
           [Deinococcus deserti VCD115]
          Length = 649

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 153/395 (38%), Gaps = 48/395 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G    + +   ++E+Q R G   +  P + + +L+  SG Y  Y      
Sbjct: 266 GKGLPLWLPNGTVLREELAGFLKEQQFRRGYQGVITPNIGNLELYKTSGHYPYYADGQFN 325

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             + +D+  +  P +      I+ S  +SYR+LP    +    +R E      G+ R R 
Sbjct: 326 PIEVDDEQYMLKPMNCPHHVRIYASKPRSYRDLPVRLAEFGTVYRYEQSGELNGLTRVRG 385

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHE 209
           F   DA+ F   P+  K  +  +    + +    G+  +  R      ES    GD ++ 
Sbjct: 386 FTQDDAHLF-CRPDQLKKEFLDVLDLTVLVLKTFGMNDVRFRVGTRDPESDKYVGDEAN- 443

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +  E Q+  + D +  P   E  D               A Y    D        
Sbjct: 444 ----WELAERQILEAVDEVGLPYTIEPGD--------------AAFYGPKLDF------- 478

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                K V  R  ++G I      Y+LP     ++ G DG+DH  + +     G++    
Sbjct: 479 ---VVKDVLGREWQLGTI---QVDYNLPERFDISYVGEDGQDHRPIMIHRAPFGSLERFV 532

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + G   +W   +AP ++ +I I        +  E++ + L   G     DD   
Sbjct: 533 GILIEHYAGDFPLW---LAPRQVMIIPIADRHN---EYAEELRSELHAAGLRAEVDDSSN 586

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++ ++   A+L   P+ +IVG K     +V ++ R
Sbjct: 587 RMQAKVRTAELSKIPVMLIVGDKEQEARQVSVRER 621


>gi|152996610|ref|YP_001341445.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083612|sp|A6VYI1|SYT_MARMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150837534|gb|ABR71510.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 645

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 166/440 (37%), Gaps = 55/440 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      KL L    + + + G+  W P G +    V   +R++Q    
Sbjct: 232 YLTRIEEAEKRDHRKLGKKLDLFH--VQEEAPGMVFWHPKGWRLYQAVEQYMRQKQLDNN 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +  Y + M      N    +  P +      ++   +KSY
Sbjct: 290 YQEVKTPQIVDRVLWEKSGHWGKYHENMFTTHSENRDYAV-KPMNCPCHIQVYNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-R 183
           R+LPF   +     R+E      G+MR R F+  D + F    EG        F+  L  
Sbjct: 349 RDLPFRMAEFGSCHRNEPSGALHGIMRVRNFVQDDGHIF--VTEGQIQQEVSEFIDLLHE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G  +I  R  + P     S E    A+   ++   S       +P E   +   I
Sbjct: 407 VYADFGFDNIVYRLSTRPEQRVGSDEVWDKAEKALSEALDSAGLDWEELPGEGAFYGPKI 466

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--M 298
             +                    L D+             +G ++  GT    +S+P  +
Sbjct: 467 EFS--------------------LKDA-------------IGRVWQCGTIQVDFSMPTRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   DG +   V +    +G++     ++    +G   +W   +AP ++ ++NI   
Sbjct: 494 GAQYVSEDGSRQTPVMLHRAIVGSLERFIGILIEDTEGAFPVW---LAPEQVVIMNITDR 550

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D C  +  RL+  G     D   E+IG +     L   P  ++VG K V   +V 
Sbjct: 551 QA---DYCSVLEKRLNSNGFRAKLDLRNEKIGFKIREHTLQRVPYMIVVGDKEVEQEQVA 607

Query: 418 IKHRLTGIREDMSLEEVINY 437
           ++ R TG  ED+ +  + ++
Sbjct: 608 VRTR-TG--EDLGVMSISDF 624


>gi|225870895|ref|YP_002746842.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|225700299|emb|CAW94574.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 655

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 162/394 (41%), Gaps = 36/394 (9%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 261 MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWEHY 320

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 321 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 380

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 381 GLQRVREMTLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR---------LS 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +      D  +T  +   D M     S      D++ +     E   A Y    D+   +
Sbjct: 431 YR-----DPKDTHKYYDNDEMWENAQSMLKAALDEMGADYFEAEGEAAFYGPKLDI---Q 482

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           +  +L   + +S   ++    F    +++L    ++ GADG++H   M   G I  M   
Sbjct: 483 VKTALGNEETLSTIQLD----FLLPERFNL----SYIGADGEEHRPVMIHRGVISTMERF 534

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++  ++ G    W   +AP ++++I I     +  D   ++   L   G     DD  
Sbjct: 535 TAILIETYKGAFPTW---LAPRQVTVIPISNEAHI--DYAWEVAKILRDHGIRADVDDRN 589

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           E++  +   +     P Q+IVG K + D  V ++
Sbjct: 590 EKMQYKIRASQTSKIPYQLIVGDKEMQDKSVNVR 623


>gi|195978510|ref|YP_002123754.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975215|gb|ACG62741.1| threonyl-tRNA synthetase ThrS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 655

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 163/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           M+ Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 261 MVSQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWEHY 320

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 321 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 380

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 381 GLQRVREMTLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR---------LS 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 431 YR-----DPKDTHKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 480

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    +++L    ++ GADG++H   M   G I 
Sbjct: 481 I---QVKTALGNEETLSTIQLD----FLLPERFNL----SYIGADGEEHRPVMIHRGVIS 529

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 530 TMERFTAILIETYKGAFPTW---LAPRQVTVIPISNEAHI--DYAWEVAKTLRDHGIRAD 584

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 585 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 623


>gi|254993456|ref|ZP_05275646.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 445

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 169/403 (41%), Gaps = 36/403 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P + + +L+  SG +D Y ++M   
Sbjct: 65  QGLPLWLPKGATIRRVIERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPT 124

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      I+++ I SYR LP    ++ +  R E+     G+ R R  
Sbjct: 125 MKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGM 184

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    +K    R         LS+      D
Sbjct: 185 TLNDAHVF-VRPDQIKDEFKRVVELILEVYKDFDIKDYSFR---------LSYR-----D 229

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     +      D + ++    E   A Y    DV   ++  ++ + 
Sbjct: 230 PKNTEKYFDDDAMWEKAQAMLKSAMDEMEMDYFEAEGEAAFYGPKLDV---QVKTAIGKE 286

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA +IE  
Sbjct: 287 ETLSTVQLD----FLLPERFDL----TYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY 338

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ LI + A   +  D  + +  +L + G     DD  E++G + 
Sbjct: 339 ---KG-AFPTWLAPVQMELIPVNADAHL--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKI 392

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A     P  +++G + V    V ++   +   E M L+  I
Sbjct: 393 REAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETMDLDAFI 435


>gi|251781963|ref|YP_002996265.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390592|dbj|BAH81051.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126789|gb|ADX24086.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 647

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 167/415 (40%), Gaps = 46/415 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 252 MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWEHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M  + D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R         LS
Sbjct: 372 GLQRVREMTLNDGHIF-VTPEQIRDEFKRTLQLIIDVYEDFNLTDYRFR---------LS 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
           +      D  +T  +   D M      EN         DD+       E   A Y    D
Sbjct: 422 YR-----DPEDTHKYYDNDEM-----WENAQAMLKGAMDDMGVDYFEAEGEAAFYGPKLD 471

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 472 I---QVKTALGNEETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVIS 520

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 521 TMERFTAILIETYKGAFPTW---LAPHQVTVIPISNEAHI--DYAWEVAKTLRDRGVRAD 575

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E++  +   +     P Q+IVG K + +  V ++   +      S+E+ +
Sbjct: 576 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVRRYGSKATHTESVEDFV 630


>gi|150400672|ref|YP_001324438.1| prolyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|171460849|sp|A6UTK4|SYP_META3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150013375|gb|ABR55826.1| prolyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 456

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 157/410 (38%), Gaps = 74/410 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP G K        IR+  + +   E   P L   DL  + G +    +E +  
Sbjct: 25  KGCGVYLPYGFKIRRYAFEAIRDMLDESNHDEALFPMLIPEDLLAKEGEHIKGFEEEVYW 84

Query: 97  ADRN-----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                    D  +   PT E  +  + +  IK + +LP   YQI   FR E +    ++R
Sbjct: 85  VTHGGTTPLDVKLALRPTSETPIYHMMKLWIKVHTDLPIKIYQIVNSFRYETKHTRPLIR 144

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +  K+A++   T E ++         Y   F R+G+ +I                 
Sbjct: 145 LREIMTFKEAHTAHSTSEEAEAQVQTALNIYKTFFDRMGVPTI----------------- 187

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                     V    ++  FP       FD I      ++  T        VHN      
Sbjct: 188 ----------VSQRPEWDKFPGADYTMAFDTIFPDGKTMQIGT--------VHN------ 223

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                        +G   +F   + L       G D    Y     YGI   R++A++I 
Sbjct: 224 -------------LGQ--HFAKTFELEFETPEGGKD----YAYQTCYGISD-RIIASIIA 263

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG+I P  VAP +I +I +  K  +++  +  ++IY  L K    V  DD   + 
Sbjct: 264 LHGDEKGLILPPEVAPHQIIIIPLLFKGKEEIAMNKAKEIYKSL-KNTYRVKLDDRDIRP 322

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
           G +F   +L G P+++ +G + + ++K+ I  R TG    I ED  L E+
Sbjct: 323 GKKFNDWELKGAPIRIELGPRDIENNKLTIYRRDTGEKFQIDEDNLLNEL 372


>gi|118479724|ref|YP_896875.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|118418949|gb|ABK87368.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 646

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 230 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 289

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 290 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 349

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 350 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 408

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 409 NLTLEVYKDFGLENYSFR---------LSYR-----DPEDTKKYYADDEMWEKAQGMLKE 454

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 455 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 506

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              ++ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 507 ---SYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 559

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 560 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 617

Query: 416 VEIK 419
           V ++
Sbjct: 618 VNVR 621


>gi|16800662|ref|NP_470930.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|22654125|sp|Q92BF5|SYT_LISIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16414081|emb|CAC96825.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|313618753|gb|EFR90658.1| threonyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 640

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 170/403 (42%), Gaps = 36/403 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P + + +L+  SG +D Y ++M   
Sbjct: 260 QGLPLWLPKGATIRRVIERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPT 319

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      I+++ I SYR LP    ++ +  R E+     G+ R R  
Sbjct: 320 MKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    +K    R         LS+      D
Sbjct: 380 TLNDAHVF-VRPDQIKDEFKRVVELILEVYKDFDIKDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     +      D ++++    E   A Y    DV   ++  ++ + 
Sbjct: 425 PKNTEKYFDDDAMWEKAQAMLKSAMDEMNMDYFEAEGEAAFYGPKLDV---QVKTAIGKE 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA +IE  
Sbjct: 482 ETLSTVQLD----FLLPERFDL----TYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY 533

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ LI + A   +  D  + +  +L + G     DD  E++G + 
Sbjct: 534 ---KG-AFPTWLAPVQMELIPVNADAHL--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKI 587

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A     P  +++G + V    V ++   +   E M L+  I
Sbjct: 588 REAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETMDLDAFI 630


>gi|88803834|ref|ZP_01119357.1| threonyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88780362|gb|EAR11544.1| threonyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 646

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 178/441 (40%), Gaps = 49/441 (11%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +   G+  WLP G      +   +++ Q + G
Sbjct: 231 YLALLEEAKQRDHRKLGRELELFT-FSQKVGAGLPLWLPKGAALRGRLEDFLKKAQKKAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y+ YG +  +     + D+  +  P +     +++     
Sbjct: 290 YEMVMTPHIGQKELYVTSGHYEKYGADSFQSIKTPKMDEEFLLKPMNCPHHCEVYNFKPY 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +    L
Sbjct: 350 SYKDLPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQLDQEFKDVIDLVL 408

Query: 183 RIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +F  LG +     + +R ++ P       ++I   +T E          +  I S  TD
Sbjct: 409 YVFSSLGFEDFTAQVSIRDKNTP------EKYIGDVETWE--------IAENAIISAATD 454

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
                 L+ +VE+  A +      +  KL D +   K    R  ++G I      Y+LP 
Sbjct: 455 ----KGLSFVVEEGEAAF------YGPKL-DFMV--KDALGRSWQLGTI---QVDYNLPK 498

Query: 298 -MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+KGAD + H  V +     G+M    AV+     G   +W   + P ++ L+ I 
Sbjct: 499 RFDLTYKGADNQLHRPVMIHRAPFGSMERFIAVLLEHTGGNFPLW---LTPDQVILLPIS 555

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              Q      EK+   L         D+  E+ G +   A++   P  VIVG K   +  
Sbjct: 556 DKYQ---KYSEKVLESLENSEIRALADNRNEKTGRKIRDAEVSKTPYMVIVGEKEEQEGT 612

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           V ++    G     ++EE I+
Sbjct: 613 VSVRKHGEGDIGTFTIEEFIS 633


>gi|295135444|ref|YP_003586120.1| threonyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294983459|gb|ADF53924.1| threonyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 648

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 159/405 (39%), Gaps = 43/405 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + +   +++ Q + G   +  P +   +L+V SG Y  YG++  + 
Sbjct: 261 QGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVSPHIGHKELYVTSGHYAKYGEDSFQP 320

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +++ S   SYR+LP  F +    +R E      G+ R R
Sbjct: 321 IKTPHEGEEFLLKPMNCPHHCEMYNSQSWSYRDLPKRFAEFGTVYRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE     + K+    L +F  LG ++   +              + L
Sbjct: 381 GFTQDDAHIF-CTPEQLDEEFKKVIDLTLYVFDSLGFENFTAQ--------------VSL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDI--ISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D    + +   D  D    +EN   +      LN ++E   A +            D +
Sbjct: 426 RDPENKEKYIGSD--DVWEKAENAIINAAKEKGLNYVIETGEAAFYGPK-------LDFM 476

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
              K    R  ++G I      Y+LP     T+KG+D + H  V +     G+M    A+
Sbjct: 477 V--KDALGRSWQLGTI---QVDYNLPERFDLTYKGSDNESHRPVMIHRAPFGSMERFIAI 531

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     G   +W   + P +  ++++    +      +K+ + L         D+  E I
Sbjct: 532 LLEHTAGNFPLW---LMPEQAIILSL---SEKYEKYSQKVLSLLENHEIRAVLDNRNETI 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G +   A++  FP  +IVG +   D  V ++    G    M +EE
Sbjct: 586 GKKIREAEVQKFPYMLIVGEQEAKDGTVSVRKHGEGDIGTMPVEE 630


>gi|94984677|ref|YP_604041.1| prolyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|114152189|sp|Q1J0W2|SYP_DEIGD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94554958|gb|ABF44872.1| prolyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 497

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 81/410 (19%), Positives = 160/410 (39%), Gaps = 71/410 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL----AD 98
           P G    +N+   + +    TG   +  PTL   +    E+   + +  E+  +     +
Sbjct: 54  PYGTALWENIQRWLDDRFKATGHESLIFPTLIPMNFITKEADHVEGFAPELFTVDRIGTE 113

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           +  +  +  PT E ++  ++   + SYR+LPF  YQ    FR ELR +   +R+ EF   
Sbjct: 114 QLTEPYVLRPTSETIIGYMWSGWLNSYRDLPFLHYQWGSVFRAELRTK-AFLRTSEFYWH 172

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   + E ++    ++                           DL HEF        
Sbjct: 173 EGHTAHASEEEARREVRQIL--------------------------DLYHEF-------- 198

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 +D +  P+         +    +  E++    A  S            E     
Sbjct: 199 -----CRDILALPV---------VRGEKTASERFAGAVATYS-----------IEGMMRD 233

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  +S      F+  + ++ Y    S+ I + R++ A+I +  D  G+
Sbjct: 234 GKALQSGTSHYLGQNFSKAFDVKFQTREQREEYAYTTSWAISS-RIIGAIIMTHGDDFGL 292

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           I P  +AP ++ +I +   +  DQ+  +  EK+   L   G  V  D   G   G ++  
Sbjct: 293 IMPPRIAPIQVVVIPVSRKENFDQMVAEG-EKLAHELRAQGLRVKVDRREGVTNGFKYND 351

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +L G P+++ +G + +    V +K+R    +E +  EE I   ++R  +
Sbjct: 352 WELKGVPVRIELGPRDLEQGVVVVKNRNAEEKETLPREEAIRGMANRLDS 401


>gi|160943086|ref|ZP_02090323.1| hypothetical protein FAEPRAM212_00565 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445555|gb|EDP22558.1| hypothetical protein FAEPRAM212_00565 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104698|emb|CBL02242.1| prolyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3]
          Length = 479

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   YFG K+S     TF G D + H+    S+G+ + R+V A+I +  D  G+I
Sbjct: 227 KALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV-STRLVGAIIMTHGDDDGLI 285

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P ++AP ++ ++ I AH     +   ++  ++SK    V  DD     G +FA  ++ G
Sbjct: 286 LPPAIAPIQVVVVPIAAHKPGVSEKAAELAEKISKYA-RVKLDDSDNAPGWKFAQWEMKG 344

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            PL++ +G K +  ++  +  R T  +  +SL+E+
Sbjct: 345 VPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDEL 379


>gi|159042526|ref|YP_001541778.1| prolyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|259511577|sp|A8MC04|SYP_CALMQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157921361|gb|ABW02788.1| prolyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 481

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G + Y G  +S      + G DG+ HY+   SYGI + R++A++I  + D +G+
Sbjct: 223 GRTMQIGTVHYLGENFSRVFDVKYLGKDGQMHYIHTTSYGI-SERIIASMIAVNGDDRGL 281

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           + P   AP ++ +I I    DQ   +  + +   L   G  V  DD  ++  G ++   +
Sbjct: 282 LLPPRYAPIQVVVIPIMYGEDQSVLNYAKGVSGELLNAGVRVHVDDRRDKTPGWKYYHWE 341

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L G P+++ VG   V D+ V +  R T
Sbjct: 342 LKGVPIRLEVGPSDVKDNAVTLTRRDT 368



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 4/158 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG Y W P G     NV A+IR   + TG  E+  P     + +  ES     +  E+  
Sbjct: 37  KGAYIWRPYGVAIRRNVEALIRRLHDETGHQEVLFPVFIPYEFFSKESEHIRGFESEVFW 96

Query: 96  LADRN--DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++     ++ ++  PT E  M  +F+  I+ + +LP   YQI   FR E +    ++R R
Sbjct: 97  VSKGTGGEERLVLRPTSETAMMPMFKLWIRDHTDLPLRVYQIVSVFRAETKMTHPMIRLR 156

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           E  M K+A++     + ++    +    Y RI   L +
Sbjct: 157 EISMFKEAHTAHADRDDAERQVKEAVGIYRRIMDELCI 194


>gi|255280775|ref|ZP_05345330.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255268712|gb|EET61917.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 642

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 172/418 (41%), Gaps = 61/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+     G   +LP G    + +    RE   + G +E+S P + +  LW  SG +D Y 
Sbjct: 253 MMRDEGPGFPFFLPNGMIVKNALLDYWREIHRKAGYVEISTPIMLNRQLWETSGHWDHYR 312

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   + D  D A+   P +      +++S  +SYR+LP    +I L  R E   +  G
Sbjct: 313 ENMYTTVIDDTDFAI--KPMNCPGGILVYQSEPRSYRDLPLRMGEIGLVHRHEKSGQLHG 370

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           +MR R F   DA+ F +TPE        +      ++   G K    +  R E+  +G D
Sbjct: 371 LMRVRCFNQDDAHIF-MTPEQICDEIKGVVKLIDEVYQLFGFKYHVELSTRPENS-MGSD 428

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHN 264
              E   +A  G                       D + L+ +V +   A Y    D H 
Sbjct: 429 EDWE---MATDGLRSAL------------------DDLGLDYVVNEGDGAFYGPKIDFHL 467

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSYG 318
           E   DS             +G  +  GT    + LP+  +  + GADG+ H  + +    
Sbjct: 468 E---DS-------------IGRTWQCGTIQLDFQLPLRFNCEYIGADGEKHRPIMIHRVV 511

Query: 319 IGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            G++ R +  +IE         +P  ++P ++ ++ I   D+   D  +K+ A L++ G 
Sbjct: 512 FGSVERFIGILIEHFAGA----FPTWLSPEQVRVLPIS--DKYL-DYADKVNAALNENGI 564

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               D   E+IG +   A L   P  ++VG+K   D KV ++ R  G     +L++ I
Sbjct: 565 RSSVDTRAEKIGYKIREARLAKVPYMLVVGAKEEEDGKVSVRSRFLGDEGQKNLDDFI 622


>gi|83590594|ref|YP_430603.1| threonyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|83573508|gb|ABC20060.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Moorella
           thermoacetica ATCC 39073]
          Length = 633

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 159/420 (37%), Gaps = 47/420 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   +   G    + +    REE  R G +E+  P + S  LW +SG +D Y +
Sbjct: 254 LHEEGPGFPFFHHKGMIIRNELEQFWREEHRRAGYLEIRTPVILSRTLWEQSGHWDHYRE 313

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      ++++   SYR+LP    ++ L  R E      G+
Sbjct: 314 NMYFTKIDGADYAI--KPMNCPGAILVYKTEQHSYRDLPLRLAELGLVHRHEKSGVLHGL 371

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   D++ F + P         +     R ++  G K   +   + P     S E
Sbjct: 372 MRVRAFTQDDSHIF-MLPSQIASEIQGVIDLVDRFYNLFGFK-YHVELSTRPDNAMGSEE 429

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A +   Q   +K  M + +   +  F                Y    D H E   D
Sbjct: 430 IWETATSALRQALEAKG-MPYAVNEGDGAF----------------YGPKIDFHLE---D 469

Query: 270 SLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           SL        R  + G I   F    K+ L    T+ G DG+ H  V +     G++   
Sbjct: 470 SL-------GRTWQCGTIQLDFLMPEKFDL----TYIGEDGQKHRPVMIHRVVFGSIERF 518

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP ++ ++ I        D   K+ A L + G     +D  
Sbjct: 519 IGILIEHYGGSFPVW---LAPVQVRVLPITDRHN---DYAFKVRAELIRAGIRAEVNDRN 572

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++IG +   A +   P  ++VG K  ++  V ++ R  G    + L E I   +   S  
Sbjct: 573 DKIGYKIRAAQMEHIPYMLVVGDKEAAEGTVAVRERQAGDTGRVPLAEFIARVTREISRR 632


>gi|229815156|ref|ZP_04445493.1| hypothetical protein COLINT_02202 [Collinsella intestinalis DSM
           13280]
 gi|229809386|gb|EEP45151.1| hypothetical protein COLINT_02202 [Collinsella intestinalis DSM
           13280]
          Length = 595

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 159/402 (39%), Gaps = 56/402 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+   + G   +LP G    + +    RE  ++ G +E+S P + +  LW+ SG +D Y 
Sbjct: 215 MMRDEAPGFPFFLPNGMVLKNTLLDYWREIHHKAGYVEISTPQIMNKSLWLTSGHWDHYK 274

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M      +D+     P +      ++ S   SYR LP    +I L  R ELR    G+
Sbjct: 275 DNMYSTM-IDDEEYCIKPMNCPGGVLVYSSKPHSYRELPIRAGEIGLVHRHELRGALHGL 333

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F +TPE        +      ++ + G K    +  R E   +G D 
Sbjct: 334 FRVRCFNQDDAHLF-VTPEQLTDEIVGVVRLIDSVYQKFGFKYHVELSTRPEDS-MGSD- 390

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A+ G  +V   K  MD+ +   +  F                Y    D H E 
Sbjct: 391 --EDWAAAEEG-LKVALDKLGMDYVVNEGDGAF----------------YGPKIDFHLE- 430

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLPMS--ATFKGADG-KDHYVQMGSYGIG 320
             DSL             G  +  GT    + +P +   T+  ADG K   + +     G
Sbjct: 431 --DSL-------------GRTWQCGTVQLDFQMPQNFDLTYVDADGEKKRPIMLHRVCFG 475

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++   + GK  +W   +AP ++ ++ +    +  RD   ++  +L   G  V 
Sbjct: 476 SIERFIGILIEHYAGKFPVW---LAPMQVKVLPVS---EKSRDYAHQVTEQLEAAGIRVV 529

Query: 381 WDDMGEQIGSQFAVADLLG-FPLQVIVGSKFVSDSKVEIKHR 421
            DD  E+IG +   A  +   P  +I+G K V    + ++ R
Sbjct: 530 CDDRDEKIGYKIREARGVDRVPYMLILGEKEVEAGNISVRDR 571


>gi|218961058|ref|YP_001740833.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167729715|emb|CAO80627.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 633

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 146/401 (36%), Gaps = 39/401 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    +E+  + G   +  P L  A+LW  SG  D Y + M    
Sbjct: 262 GLVLWHPKGAMVRHLIETYWKEQHLKKGYQLVYTPHLGRANLWETSGHLDFYKENMYSKM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D   +     P +      I+ S + SYR LP    ++   +R E      G+MR R F 
Sbjct: 322 DIEGQDYYIKPMNCPFHISIYNSSLHSYRELPIRLAELGTVYRYERSGVLHGLMRVRGFT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+    TPE      +K+ V  L +    G K                 EF++   T
Sbjct: 382 QDDAHII-CTPEQMDMEVDKLIVFSLDMLKAFGFK-----------------EFLIYLAT 423

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                   K+  D    S       +     + E   A Y    D+   K+ D+L     
Sbjct: 424 KPDDCVGEKEDWDKATASLANSLQKLGLEYKVDEGGGAFYGPKIDI---KIKDAL----- 475

Query: 277 VSARGIEVGHI-FYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHD 334
              R  +   I F F       M  T+ GAD   H   M    + G++    A +   H 
Sbjct: 476 --GRAWQCTTIQFDFNEPERFDM--TYIGADNSAHRPYMIHRAVLGSVERFFATLLEYHS 531

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G   +W   +AP +I LI I        +   KI  +L + G     D   E++G +   
Sbjct: 532 GNLPLW---LAPVQIMLIPIT---DAQLNYARKIEEQLLEQGFRCELDSRSEKMGYKIRS 585

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           A+    P   I+G    ++++V ++    G    M+LE  I
Sbjct: 586 AEKNKIPFMCILGKNEENNNQVTLRQHTVGDLGAMNLEAAI 626


>gi|46907789|ref|YP_014178.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093096|ref|ZP_00230873.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217964294|ref|YP_002349972.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|226224160|ref|YP_002758267.1| threonyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824382|ref|ZP_05229383.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852182|ref|ZP_05241530.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|254931499|ref|ZP_05264858.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|255520160|ref|ZP_05387397.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
 gi|290893960|ref|ZP_06556936.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|300764775|ref|ZP_07074765.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|67461796|sp|Q71ZA9|SYT_LISMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783526|sp|B8DHI9|SYT_LISMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516560|sp|C1KVK6|SYT_LISMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46881058|gb|AAT04355.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018536|gb|EAL09292.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217333564|gb|ACK39358.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|225876622|emb|CAS05331.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605487|gb|EEW18095.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|290556498|gb|EFD90036.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|293583051|gb|EFF95083.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293593617|gb|EFG01378.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300514451|gb|EFK41508.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|307571140|emb|CAR84319.1| thrS [Listeria monocytogenes L99]
 gi|313608610|gb|EFR84472.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
 gi|328465594|gb|EGF36823.1| threonyl-tRNA synthetase [Listeria monocytogenes 1816]
 gi|332312001|gb|EGJ25096.1| Threonyl-tRNA synthetase [Listeria monocytogenes str. Scott A]
          Length = 640

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 169/403 (41%), Gaps = 36/403 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P + + +L+  SG +D Y ++M   
Sbjct: 260 QGLPLWLPKGATIRRVIERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPT 319

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      I+++ I SYR LP    ++ +  R E+     G+ R R  
Sbjct: 320 MKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    +K    R         LS+      D
Sbjct: 380 TLNDAHVF-VRPDQIKDEFKRVVELILEVYKDFDIKDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     +      D + ++    E   A Y    DV   ++  ++ + 
Sbjct: 425 PKNTEKYFDDDAMWEKAQAMLKSAMDEMEMDYFEAEGEAAFYGPKLDV---QVKTAIGKE 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA +IE  
Sbjct: 482 ETLSTVQLD----FLLPERFDL----TYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY 533

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ LI + A   +  D  + +  +L + G     DD  E++G + 
Sbjct: 534 ---KG-AFPTWLAPVQMELIPVNADAHL--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKI 587

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A     P  +++G + V    V ++   +   E M L+  I
Sbjct: 588 REAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETMDLDAFI 630


>gi|30264646|ref|NP_847023.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47530117|ref|YP_021466.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187467|ref|YP_030719.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49481700|ref|YP_038622.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52140935|ref|YP_085897.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|65321944|ref|ZP_00394903.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165871455|ref|ZP_02216102.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167636725|ref|ZP_02395009.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167642081|ref|ZP_02400304.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170689721|ref|ZP_02880895.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170708708|ref|ZP_02899146.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177653139|ref|ZP_02935426.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196042361|ref|ZP_03109631.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218905803|ref|YP_002453637.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225866553|ref|YP_002751931.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227817360|ref|YP_002817369.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228917215|ref|ZP_04080772.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929623|ref|ZP_04092641.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935883|ref|ZP_04098693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948301|ref|ZP_04110584.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093673|ref|ZP_04224773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229124142|ref|ZP_04253334.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229186832|ref|ZP_04313987.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229601552|ref|YP_002868855.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254686931|ref|ZP_05150789.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254720893|ref|ZP_05182684.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254736684|ref|ZP_05194390.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741722|ref|ZP_05199409.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254754681|ref|ZP_05206716.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757513|ref|ZP_05209540.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30259321|gb|AAP28509.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505265|gb|AAT33941.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181394|gb|AAT56770.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49333256|gb|AAT63902.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974404|gb|AAU15954.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|164712752|gb|EDR18282.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167509956|gb|EDR85379.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167527843|gb|EDR90677.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170126388|gb|EDS95277.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170666324|gb|EDT17113.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081663|gb|EDT66734.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196026805|gb|EDX65442.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218536622|gb|ACK89020.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225787158|gb|ACO27375.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
 gi|227005330|gb|ACP15073.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228596569|gb|EEK54234.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228659444|gb|EEL15092.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228689760|gb|EEL43567.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228811288|gb|EEM57626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823651|gb|EEM69473.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830010|gb|EEM75629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842416|gb|EEM87507.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229265960|gb|ACQ47597.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 645

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 175/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPEDTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              ++ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + 
Sbjct: 506 ---SYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|154687027|ref|YP_001422188.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166223321|sp|A7Z7I1|SYT_BACA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154352878|gb|ABS74957.1| ThrS [Bacillus amyloliquefaciens FZB42]
          Length = 643

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 164/406 (40%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S DL+  SG +D Y   M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKELSLGYEHVYTPVLGSKDLYETSGHWDHYQDTMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMIYKQDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKEEFIRTVRLIQDVYEDFGLNDYTFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S      D++       E   A Y    DV   ++  ++ + 
Sbjct: 429 PEDTEKYFDDDEMWNKAQSMLKAAMDEMGHDYYEAEGEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIE-E 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL + G  V  D   E+IG + 
Sbjct: 537 HKGALPTW---LAPVQFQVIPVSP--SVHLDYAKKVQERLQREGLRVELDSRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E +SL++ +  A
Sbjct: 592 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQKSETVSLDDFVKKA 637


>gi|257875532|ref|ZP_05655185.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257809698|gb|EEV38518.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 646

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 172/416 (41%), Gaps = 48/416 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + + DL+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMANVDLYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D ++F + P+  K  + +     + ++    +     R +   P   D   +   + 
Sbjct: 382 TLNDGHTF-VRPDQIKEEFKRTLDLMIGVYEDFNITDYRFRLSYRDPQNKDKYFDDDAMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  +T +  + D ++        D+ +        E   A Y    DV   ++  +L   
Sbjct: 441 ENAQTMLKAAMDELEL-------DYFE-------AEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++++  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENNHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + S+I  +++AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQASIIPVSVEAHS----DYAYEIKERLQAQGLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIRE-----DMSLEEVINYA 438
           +   +     P Q++VG + V+D+ V I+    + T + E     D    EV NY+
Sbjct: 589 KIRASQTQKIPYQIVVGDQEVNDATVNIRRYGSKETQVEELNLFVDAMAAEVKNYS 644


>gi|194017082|ref|ZP_03055694.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010950|gb|EDW20520.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 646

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 167/406 (41%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P L + +L+  SG +  Y ++M  +
Sbjct: 267 QGLPLWLPKGATIRRVIERYIVDKEVRLGYEHVYTPVLANVELYKTSGHWAHYQEDMFPV 326

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I+++   SYR LP    ++    R E+     G+ R R  
Sbjct: 327 MEMDNEDLVLRPMNCPHHMMIYKNEPHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 386

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 387 TLNDAHIF-VRPDQIKDEFIRTVRLIEEVYQDFGLNDYTFR---------LSYR-----D 431

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   D  D +  +    E   A Y    DV   ++  +L + 
Sbjct: 432 PEDTEKYFDDDAMWNKAQSMLKDAMDELGHDYYEAEGEAAFYGPKLDV---QVKTALGKE 488

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 489 ETLSTVQVD----FLLPERFDL----TYIGEDGKHHRPVVIHRGVVSTMERFVAFLIEEY 540

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG + P  +AP +  +I +     V  D  +K+  RL   G  V  D   E+IG + 
Sbjct: 541 ---KGAL-PTWLAPVQFQVIPVSP--SVHLDYAKKVQERLQLEGLRVELDSRDEKIGYKI 594

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E M LE  + +A
Sbjct: 595 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQDSETMDLEAFVKHA 640


>gi|124025364|ref|YP_001014480.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166225477|sp|A2C155|SYT_PROM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123960432|gb|ABM75215.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 640

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 161/428 (37%), Gaps = 77/428 (17%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  +  + H  + + G+  W P G      +   IRE  ++    E+  P 
Sbjct: 237 EAEKRDHRKLGKKLSLFHFQEEAPGMIFWHPNGWTIYRVLQDFIRETISKYDYQELKSPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG +D + ++M      N +  I  P +      +F   +KSYR+LP    
Sbjct: 297 IVCRSLWEKSGHWDKFKEDMFTTTSENKEYAI-KPMNCPCHVQVFNQGLKSYRDLPIRLS 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  D + F  T E  +            ++   G  S
Sbjct: 356 EFGSCHRNEPSGALHGLMRVRNFVQDDGHIF-CTNEQIQEEVQSFIDLVFEVYKAFGFNS 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  +                                 P +    DD+         W
Sbjct: 415 ILIKLSTR--------------------------------PEKRVGSDDV---------W 433

Query: 253 TAPYAATSDVHNEKLFD--SLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
                A SD  + K  D   LP         IE      +  ++  GT    +S+P  ++
Sbjct: 434 DKSEKALSDALDSKGLDWSLLPGEGAFYGPKIEFSLKDCLNRVWQCGTIQVDFSMPERLN 493

Query: 300 ATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +++   DGK       H   +GS+     R +  +IE ++ G   IW   + P +I ++ 
Sbjct: 494 SSYIDVDGKKQPPVMLHRAILGSFE----RFIGILIE-NYSGNLPIW---LCPLQIVVMG 545

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I   +    DAC    ++L K G     D   E++G +     +   P  +I+G K   +
Sbjct: 546 ITDRNN---DACLDTKSKLIKYGFRASVDTRNEKVGFKIREHTMQRIPFLIIIGDKEEEN 602

Query: 414 SKVEIKHR 421
           +++ ++ R
Sbjct: 603 NEISVRTR 610


>gi|33322957|gb|AAQ07215.1|AF496523_1 prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis]
          Length = 105

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 49/81 (60%)

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPRFG++R REF+M D YSF  + E     ++    +YL+IF R G++  P+ A+SG
Sbjct: 1   DENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDNEKAAYLKIFKRTGVEVRPVIADSG 60

Query: 201 PIGGDLSHEFIVLADTGETQV 221
            +GG  S EF   A  GE  +
Sbjct: 61  TMGGKNSIEFQAPAAVGEDTI 81


>gi|326795752|ref|YP_004313572.1| threonyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326546516|gb|ADZ91736.1| threonyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 638

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/427 (21%), Positives = 162/427 (37%), Gaps = 58/427 (13%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      KL L    + + + G+  W P G +    V   +R++Q    
Sbjct: 232 YLLRIEEAEKRDHRKLGKKLDL--FHVQEEAPGMVFWHPKGWRLYQAVEQYMRQKQLDNN 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +  Y + M      N    +  P +      ++   +KSY
Sbjct: 290 YQEVKTPQIVDRVLWEKSGHWGKYQENMFTTHSENRDYAV-KPMNCPCHIQVYNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-R 183
           R+LPF   +     R+E      G+MR R F+  D + F    E    S    F+  L  
Sbjct: 349 RDLPFRMAEFGSCHRNEPSGALHGIMRVRNFVQDDGHIF--VTENQIQSEVSEFIKLLHE 406

Query: 184 IFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++   G  +I  R  + P   +G D       + D  E  +                D  
Sbjct: 407 VYADFGFDNIIYRLSTRPEQRVGSD------EVWDKAEKAL---------------ADAL 445

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP 297
           D+  L     +W          +  K+  SL +          +G ++  GT    +S+P
Sbjct: 446 DVAGL-----EWEE-LPGEGAFYGPKIEFSLKD---------AIGRVWQCGTIQVDFSMP 490

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A +   DG +   V +    +G++     ++    +G   +W   +AP ++ ++NI
Sbjct: 491 TRLGAQYVSEDGSRQTPVMLHRAIVGSLERFIGILIEETEGSFPLW---LAPEQVVIMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   + CE +   L+  G     D   E+IG +     L   P  ++VG K V + 
Sbjct: 548 TDRQT---EYCENLEKTLNSNGFRAKLDLRNEKIGFKIREHTLQRIPYLIVVGDKEVENG 604

Query: 415 KVEIKHR 421
           KV ++ R
Sbjct: 605 KVAVRTR 611


>gi|291543417|emb|CBL16526.1| prolyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 485

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 131/341 (38%), Gaps = 69/341 (20%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRS 152
           +L DR    +   PT E +  + + + + SYR+LP  + Q    +++    RP    +RS
Sbjct: 105 KLEDR----LCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVVRWEKTTRP---FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T + +     +M   Y                               
Sbjct: 158 REFLWQEGHTIHATAQEAIEETERMLNVY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD      FC        I    T+ D             A YA  + +H+        
Sbjct: 187 -AD------FCEHSLAMPVIKGRKTESDKFAGA-------VATYAIEALMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++      +   + K       S+G+   R++ A+I + 
Sbjct: 225 ------GKALQAGTSHYFGDGFAKAFDIEYTDKENKRVNPHQTSWGV-TTRLIGAIIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P +VAP +  ++ I  H +   +   ++   L   G  V  DD     G +F
Sbjct: 278 GDNSGLVLPPAVAPIQAVIVPIAQHKEGVLEKANQLAEALKAQGIRVKLDDSDNSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           A  ++ G P+++ +G K +  S+  +  R  G ++ ++L+E
Sbjct: 338 AEYEMKGVPVRIEIGPKDIEQSQCIVATRYNGEKQPVALDE 378


>gi|299822779|ref|ZP_07054665.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816308|gb|EFI83546.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 640

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 171/406 (42%), Gaps = 40/406 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I + + R G   +  P +   D + +SG +D Y ++M   
Sbjct: 260 QGLPLWLPKGATIRRVIERYIVDREERLGYSHVYTPIMAKVDFYKQSGHWDHYHEDMFPP 319

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      ++++ I SYR LP    ++ L  R E+     G+ R R  
Sbjct: 320 MKMDNEELVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGLMHRYEMSGALSGLQRVRGM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    +     R         LS+      D
Sbjct: 380 TLNDAHVF-VRPDQIKDEFKRVLELILAVYKDFDITDYKFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     +   D  D + ++    E   A Y    DV   ++  ++ + 
Sbjct: 425 PENTEKYFDDDAMWEKAQTMLKDAMDEMEMDYFEAEGEAAFYGPKLDV---QVKTAIGKE 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA +IE  
Sbjct: 482 ETLSTVQLD----FLLPERFDL----TYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY 533

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I  N  AH     D  +++  +L + G  V  DD  E++G 
Sbjct: 534 ---KG-AFPTWLAPIQMQIIPVNRDAH----FDYAKEVEDKLVRAGLRVEIDDRNEKLGY 585

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +   A     P  ++VG +   +  V I+   +   E +S+++ I 
Sbjct: 586 KIREAQTQKIPYALVVGDQESENGTVNIRRYGSKDSETLSVDDFIK 631


>gi|193216362|ref|YP_001997561.1| prolyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|259511584|sp|B3QYP1|SYP_CHLT3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193089839|gb|ACF15114.1| prolyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 481

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 136/328 (41%), Gaps = 65/328 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATE 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +K    +M   Y R F                                      ++++
Sbjct: 167 TEAKEEVLRMIEVY-RHF--------------------------------------AEEY 187

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           M  P+         I+ + +  E++       +  H     +++ ++     + ++ G  
Sbjct: 188 MAIPV---------IVGMKTESEKF-------AGAHETFCIEAMMQD----GKALQAGTS 227

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++      F+  DG   YV   S+G+ + R++ A+I +  D KG++ P  +A  
Sbjct: 228 HHLGQNFAKAFDCKFQTKDGSLEYVWASSWGV-STRLIGALIMAHSDDKGLVLPPKLASR 286

Query: 348 KISLINIKAHDQ--VCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQV 404
           +  ++ I   D+  V   A E +   L   G  VF DD  +   G +FA  +L G P+++
Sbjct: 287 QAVIVPILKGDKAAVLEKAVE-LEKMLKAAGVQVFLDDSEQNTPGWKFAEYELQGIPVRI 345

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +G + V+  K  +  R T  +E + ++
Sbjct: 346 ELGPRDVAAGKCVVARRDTSEKETLEID 373


>gi|218259669|ref|ZP_03475318.1| hypothetical protein PRABACTJOHN_00977 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224962|gb|EEC97612.1| hypothetical protein PRABACTJOHN_00977 [Parabacteroides johnsonii
           DSM 18315]
          Length = 651

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 156/413 (37%), Gaps = 65/413 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G +    +   ++  Q + G  ++  P +    L+V SG Y  YGK+  +  
Sbjct: 262 GLPLWLPRGTQLRLKLEDFLKRIQKKYGYQQVMTPHIGGKQLYVTSGHYAKYGKDSFQPI 321

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              +  +  +  P +     +IF+S  +SY++LP  F +    +R E      G+ R R 
Sbjct: 322 HTPQEGEEFLLKPMNCPHHCEIFKSFPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+      IF  L  ++   +              I L 
Sbjct: 382 FTQDDAHLF-CRPDQLKDEFLKVMDIIFIIFKALDFENFEAQ--------------ISLR 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D         K   D  I SE              E W    +A  +   EK   +  E 
Sbjct: 427 D---------KVNRDKYIGSE--------------ENWEKAESAIIEACQEKGLKAKIEY 463

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G D K H  V +     G
Sbjct: 464 GEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYTGEDNKKHRPVMIHRAPFG 523

Query: 321 AMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +M    AV+     GK  +W  PD V+   IS        +   D   ++  +L      
Sbjct: 524 SMERFVAVLIEHTGGKFPLWLTPDQVSILPIS--------EKFNDYAYEVKRQLEAEDLS 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           V  DD  E+IG +    +L   P  +IVG K   +++V ++ +  G +  M +
Sbjct: 576 VLVDDRNEKIGRKIRDTELKRIPYMLIVGEKEAENNEVSVRKQGEGDKGSMKI 628


>gi|90579635|ref|ZP_01235444.1| threonyl-tRNA synthetase [Vibrio angustum S14]
 gi|90439209|gb|EAS64391.1| threonyl-tRNA synthetase [Vibrio angustum S14]
          Length = 643

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 160/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   IRE+ N     E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWTIFRELEVFIREKLNEYDYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   + + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTEAQVQQEVTSCIEMVY-DTYKTFGFDNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E+ +  + + M+ P                I E   A Y    +     L
Sbjct: 433 ----AMWDKAESDLITALESMEIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 472 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        +  ++I  +L K G  V  D  
Sbjct: 522 FIGILIEDYAG---FFPTWLAPQQAVVMNIT---DAQSEYVQEIVEKLKKCGIRVNADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G K V    V ++ R         ++E++ +     S+
Sbjct: 576 NEKIGFKIREHTLKRVPFMLVCGDKEVEAGVVAVRTRKGKDLGKFKIDELVAFMQEEISS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|161831126|ref|YP_001597175.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|161762993|gb|ABX78635.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 660

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 169/440 (38%), Gaps = 77/440 (17%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+L+ +   + H    S G   W P G   +  +   IR+  ++ G  E+  P 
Sbjct: 246 EAEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIRQITHKYGYQEVHTPQ 305

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L  A LW +SG  + +G ++  L     + +I  P        IF   +KSYR+LP  + 
Sbjct: 306 LIDASLWDKSGHLEKFGDDIFSLPLEPQQYVI-KPMSCPAHVQIFNQGVKSYRDLPLRYA 364

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F    E    S    F+  L          
Sbjct: 365 EFGACHRNEPSGTLHGLMRLRGFVQDDAHIF--CTEDQIQSEVSAFIDQL---------- 412

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                          HE  V AD G T+V           P +    D++         W
Sbjct: 413 ---------------HE--VYADFGFTEVIHKLSTR----PEKRVGSDEV---------W 442

Query: 253 TAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
           T    A ++  N K   +D LP         IE      +G I+  GT    +S+P  + 
Sbjct: 443 TKAEQALAEALNRKGVEWDILPGEGAFYGPKIEFSLRDCLGRIWQCGTVQVDFSVPERLG 502

Query: 300 ATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           A +   DG        H   +GS+     R +  ++E S  GK  +W   +AP ++ ++N
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSF----ERFLGILLEESA-GKLPLW---LAPVQVVVMN 554

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D   +    L  +G     D   E+IG +     +   P  V++G + V+D
Sbjct: 555 ITDRQA---DYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVAD 611

Query: 414 SKVEIKHRLTGIREDMSLEE 433
             + ++         ++LEE
Sbjct: 612 KTLSVRALEDEASTTITLEE 631


>gi|73667547|ref|YP_303563.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ehrlichia canis
           str. Jake]
 gi|123745825|sp|Q3YQP0|SYT_EHRCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72394688|gb|AAZ68965.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ehrlichia canis
           str. Jake]
          Length = 633

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 158/410 (38%), Gaps = 46/410 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   + G   W   G      +   IR++    G IE+  P L + +LW +SG +D + +
Sbjct: 255 IQNEACGQVFWHKKGWTIYRTIENYIRKKLETNGYIEVKTPMLLNKELWEKSGHWDKFRE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  L++  DK +   P +      IF S I+SYR+LP    +  +  R E      G+M
Sbjct: 315 NMF-LSEAEDKVLAIKPMNCPCHIQIFNSKIRSYRDLPIRMAEFGICHRYEASGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSHE 209
           R R F   DA+ F    E    S    F + L  ++   G  +I ++    P     S E
Sbjct: 374 RVRGFTQDDAHIF--CTESQVISEALKFCNLLMEVYKDFGFTNILVKFSDRPENRAGSDE 431

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAATSDVHNEK 266
               A++   +   + +      P +   +    + +  ++I  +W         V    
Sbjct: 432 TWDRAESALKKSVEAANLNYVLNPGDGAFYGPKLEFVLKDAIGREWQCGTLQMDFV---- 487

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVV 325
               LPE                        + A + G+DGK H+  M    I G     
Sbjct: 488 ----LPER-----------------------LGAYYVGSDGKKHHPIMLHRAILGTFERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H GK  IW   +AP ++S++ I    +   +    +  +  +    V  D   
Sbjct: 521 IGILIEHHSGKFPIW---LAPTQLSILTI---SEESIEYANSLKTKAEEHNIRVELDATN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E+I  +         P+  IVG K V+++ V I++  +  ++ M +++ +
Sbjct: 575 EKINYKIRNHIHKKIPVFWIVGKKEVNENSVSIRYLESNTQQVMPIDKAL 624


>gi|291535587|emb|CBL08699.1| prolyl-tRNA synthetase, family I [Roseburia intestinalis M50/1]
          Length = 479

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 130/329 (39%), Gaps = 66/329 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D +++ I+SYR+LP  + Q    +++  E RP    +RSREFL ++ +    
Sbjct: 114 PTSETLFCDFYKNIIQSYRDLPKVYNQWCSVVRWEKETRP---FLRSREFLWQEGH---- 166

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T   +     +  V  L ++     + + M               +V     E + F   
Sbjct: 167 TAHATAEEAEQRTVQMLNVYADFCEEVLAMP--------------VVRGQKTEKEKFAGA 212

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +                           A Y   + +H+ K   S              G
Sbjct: 213 E---------------------------ATYTIEALMHDGKALQS--------------G 231

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               FG  ++      +   D K  YV   S+G+   R++ A+I    D  G++ P  +A
Sbjct: 232 TSHNFGNGFAKAFGIQYTDKDNKLQYVYQTSWGM-TTRLIGAIIMVHGDDSGLVLPPRIA 290

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +  +I I+       D  +++  R+ KV C    DD  +  G +F+  ++ G P+++ 
Sbjct: 291 PVQAMVIPIQQQKDGVLDTAKEVCERIGKV-CRAKLDDSDKSPGWKFSEQEMRGIPVRIE 349

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K ++  K     R T  + +++L+E+
Sbjct: 350 LGPKDIAAGKCVAVRRDTREKIEIALDEL 378


>gi|288928013|ref|ZP_06421860.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330847|gb|EFC69431.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 654

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 154/419 (36%), Gaps = 71/419 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R+ Q R G  E+  P + S +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTELRLRLQNMLRKIQKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     ++F    +SY++LP    +    +R E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVFAWKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            F   DA+ F   PE  K+ + +   +  +  +IFH                  D     
Sbjct: 383 SFTQDDAHIF-CRPEQVKNEFLRVMDIIQAVFKIFHF-----------------DDFEAQ 424

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I L D   T  +   D                       E W     A  D   EK  D+
Sbjct: 425 ISLRDPKNTTKYIGSD-----------------------EVWEESEQAIIDACKEKGLDA 461

Query: 271 LPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGS 316
                  +  G +        +G  +  GT    Y+LP      +   D  K   V +  
Sbjct: 462 KIAYGEAAFYGPKLDFMIKDAIGRRWQLGTIQVDYNLPERFKLEYTAEDNTKKTPVMVHR 521

Query: 317 YGIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              G+M    AV+     G   +W  PD VA   IS        +   D  +++      
Sbjct: 522 APFGSMERFTAVLIEHTAGHFPLWLIPDQVAILPIS--------EKYNDYAQRVAKYFDS 573

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           VG     D   E+IG +    ++   P  V+VG K  ++  V ++ +  G +  MS+EE
Sbjct: 574 VGVRATLDVRNEKIGRKIRDNEIKRVPYMVVVGEKEAAEGLVSMRKQGGGEQATMSMEE 632


>gi|157693298|ref|YP_001487760.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157682056|gb|ABV63200.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 646

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 167/406 (41%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P L + +L+  SG +  Y ++M  +
Sbjct: 267 QGLPLWLPKGATIRRVIERYIVDKEVRLGYEHVYTPVLANVELYKTSGHWAHYQEDMFPV 326

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I+++   SYR LP    ++    R E+     G+ R R  
Sbjct: 327 MEMDNEDLVLRPMNCPHHMMIYKNEPHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 386

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 387 TLNDAHIF-VRPDQIKDEFIRTVRLIEEVYQDFGLNDYTFR---------LSYR-----D 431

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   D  D +  +    E   A Y    DV   ++  +L + 
Sbjct: 432 PEDTEKYFDDDAMWNKAQSMLKDAMDELGHDYYEAEGEAAFYGPKLDV---QVKTALGKE 488

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 489 ETLSTVQLD----FLLPERFDL----TYIGEDGKHHRPVVIHRGVVSTMERFVAFLIEEY 540

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG + P  +AP +  +I +     V  D  +K+  RL   G  V  D   E+IG + 
Sbjct: 541 ---KGAL-PTWLAPVQFQVIPVSP--SVHLDYAKKVQERLQLEGLRVELDSRDEKIGYKI 594

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E M LE  + +A
Sbjct: 595 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQDSETMDLEAFVKHA 640


>gi|52081397|ref|YP_080188.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786773|ref|YP_092602.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319647305|ref|ZP_08001527.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
 gi|52004608|gb|AAU24550.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349275|gb|AAU41909.1| ThrS [Bacillus licheniformis ATCC 14580]
 gi|317390652|gb|EFV71457.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
          Length = 643

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 160/387 (41%), Gaps = 36/387 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S DL+  SG +D Y   M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKELALGYEHVYTPVLGSKDLYETSGHWDHYQDGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I+++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMIYKNDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL+    R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFIRTVRLIQDVYEDFGLEEYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   +  D I  +    E   A Y    DV   ++  ++ + 
Sbjct: 429 PEDTEKYYDDDEMWNKAQSMLKEAMDEIGHDYYEAEGEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    K+ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPEKFDL----TYVGEDGKPHRPVVIHRGVVSTMERFVAFLIE-E 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL + G  V  D   E+IG + 
Sbjct: 537 HKGALPTW---LAPVQFQVIPVSP--SVHLDYAKKVQERLQREGLRVEVDTRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
             A +   P  ++VG + V +  V ++
Sbjct: 592 REAQMQKIPYMLVVGDQEVENEAVNVR 618


>gi|284037200|ref|YP_003387130.1| prolyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816493|gb|ADB38331.1| prolyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 490

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 137/343 (39%), Gaps = 79/343 (23%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E V+   +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETVIWSTYKNWIQSYRDLPLLINQWANVVRWEMRTRI-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +K    +M                           D+  +F          
Sbjct: 174 HTAHATAEEAKFETRQML--------------------------DIYAQF---------- 197

Query: 221 VFCSKDFMDFPI----PSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              ++++M  P+     + N  F   DD + + ++++   A  A TS             
Sbjct: 198 ---AEEWMALPVVKGTKTANERFAGADDTLCIEAMMQDGKALQAGTS------------- 241

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                          + G  ++      F     +  YV   S+G+ + R++ A+I +  
Sbjct: 242 --------------HFLGQNFAKAFDVQFLNKQNQLDYVWGTSWGV-STRLMGALIMAHS 286

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI---YARLSKVGCDVFWDDM-GEQIG 389
           D  G++ P  +AP ++ ++ I   ++       KI      L K G  V +DD    + G
Sbjct: 287 DDDGLVLPPKLAPIQVVIVPIYRSEEQLELLSAKIKPLVQELRKAGVSVKYDDSDANKPG 346

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +FA  +L G P+++ +G + + +  VEI  R    +E +  E
Sbjct: 347 WKFAEYELRGVPVRLAMGGRDLENGTVEIARRDLKTKETVPFE 389


>gi|332971649|gb|EGK10599.1| threonine--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 637

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 155/399 (38%), Gaps = 52/399 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R E    G  E+  P +     W +SG + +Y  
Sbjct: 256 LQDEAPGMVFWHPRGWALWQVIEQHMRRELTEAGYQEVKTPQVMDKTFWEKSGHWANYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  L     +     P +      IF   ++SYR+LP    +     R+E      G+M
Sbjct: 316 NMF-LTSSEKREYAVKPMNCPGHVQIFNHGLRSYRDLPMRLAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F+  DA+ F   D   E +K ++N +    ++I+ + G K++ ++    P     S
Sbjct: 375 RVRGFVQDDAHIFCTEDQIAEETK-AFNLLV---MKIYQQFGFKNVSIKLSLRPEKRAGS 430

Query: 208 HEFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            E    A+ G  +    C  ++ + P                      A Y    + H  
Sbjct: 431 EEIWDKAEQGLRDALTACGVEWEELPGEG-------------------AFYGPKVEYH-- 469

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAM 322
            + D+L        R  + G I      + LP  + A +   D  K   V +    +G++
Sbjct: 470 -IKDAL-------GRSWQCGTI---QLDFVLPERLEAEYVAEDNTKKRPVMLHRAILGSL 518

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++   H G   +W   +AP ++ ++NI        D  +++ A+L   G  V  D
Sbjct: 519 ERFIGILIEEHAGSFPLW---LAPVQMVVMNITEKQA---DYAKEVQAKLQAAGFRVDLD 572

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              E+IG +      + +P Q+ VG K + + +V I+ +
Sbjct: 573 IRNEKIGYKIRSNSEMRYPYQLTVGDKEMENGQVSIRKK 611


>gi|229543582|ref|ZP_04432642.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328002|gb|EEN93677.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 640

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 165/389 (42%), Gaps = 40/389 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ + G   +  P L S DL+  SG +D Y ++M  +
Sbjct: 261 QGLPLWLPKGATIRRTIERYIVDKEVKLGYDHVYTPVLGSVDLYKTSGHWDHYQEDMFPV 320

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      ++++ I SYR LP    ++ L  R E+     G+ R R  
Sbjct: 321 MKMDNEELVLRPMNCPHHMMVYKNTIHSYRELPIRIAELGLMHRYEMSGALSGLQRVRGM 380

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + DA+ F + P+  K  + ++    L ++    +     R +   P   D  ++   + 
Sbjct: 381 TLNDAHIF-VRPDQIKEEFKRVVELILEVYKDFNITDYSFRLSYRDPENTDKYYDDDEMW 439

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  +  +  + D   F       D+ +        E   A Y    DV   ++  +L ++
Sbjct: 440 NKAQAMLKETMDDFGF-------DYYE-------AEGEAAFYGPKLDV---QVRTALGKD 482

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 483 ETLSTVQLD----FLLPERFDL----TYVGEDGKPHRPVVIHRGVVSTMERFVAYLIEEY 534

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I +   AH     D   K+   L   G     D   E++G 
Sbjct: 535 ---KG-AFPTWLAPIQVQVIPVSPDAH----YDYARKVQEALKAEGVRAELDARDEKLGY 586

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   A +   P  +IVG +  +D+ V ++
Sbjct: 587 RIREAQVQKIPYALIVGDQEATDNAVNVR 615


>gi|240144358|ref|ZP_04742959.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203608|gb|EEV01893.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291540831|emb|CBL13942.1| prolyl-tRNA synthetase, family I [Roseburia intestinalis XB6B4]
          Length = 479

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 130/329 (39%), Gaps = 66/329 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D +++ I+SYR+LP  + Q    +++  E RP    +RSREFL ++ +    
Sbjct: 114 PTSETLFCDFYKNIIQSYRDLPKVYNQWCSVVRWEKETRP---FLRSREFLWQEGH---- 166

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T   +     +  V  L ++     + + M               +V     E + F   
Sbjct: 167 TAHATAEEAEQRTVQMLNVYADFCEEVLAMP--------------VVRGQKTEKEKFAGA 212

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +                           A Y   + +H+ K   S              G
Sbjct: 213 E---------------------------ATYTIEALMHDGKALQS--------------G 231

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               FG  ++      +   D K  YV   S+G+   R++ A+I    D  G++ P  +A
Sbjct: 232 TSHNFGNGFAKAFGIQYTDKDNKLQYVYQTSWGM-TTRLIGAIIMVHGDDSGLVLPPRIA 290

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +  +I I+       D  +++  R+ KV C    DD  +  G +F+  ++ G P+++ 
Sbjct: 291 PVQAMVIPIQQQKDGVLDTAKEVCERIGKV-CRAKLDDSDKSPGWKFSEQEMRGIPVRIE 349

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K ++  K     R T  + +++L+E+
Sbjct: 350 LGPKDIAAGKCVAVRRDTREKIEIALDEL 378


>gi|257865905|ref|ZP_05645558.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257872238|ref|ZP_05651891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257799839|gb|EEV28891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257806402|gb|EEV35224.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 646

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 172/416 (41%), Gaps = 48/416 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + + DL+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMANVDLYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D ++F + P+  K  + +     + ++    +     R +   P   D   +   + 
Sbjct: 382 TLNDGHTF-VRPDQIKEEFKRTLDLMIGVYEDFNITDYRFRLSYRDPQNKDKYFDDDAMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  +T +  + D ++        D+ +        E   A Y    DV   ++  +L   
Sbjct: 441 ENAQTMLKAAMDELEL-------DYFE-------AEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++++  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENNHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + S+I  +++AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQASIIPVSVEAHS----DYAYEIKERLQAQGLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIRE-----DMSLEEVINYA 438
           +   +     P Q++VG + V+D+ V I+    + T + E     D    EV NY+
Sbjct: 589 KIRASQTQKIPYQIVVGDQEVNDATVNIRRYGSKETQVEELNLFVDAMAAEVKNYS 644


>gi|221054768|ref|XP_002258523.1| prolyl-t-rna synthase [Plasmodium knowlesi strain H]
 gi|193808592|emb|CAQ39295.1| prolyl-t-rna synthase, putative [Plasmodium knowlesi strain H]
          Length = 552

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 26/206 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+Y+ LPLG K+++ +   +     R  +  + +  LQ+   W  S R   Y  E L + 
Sbjct: 122 GLYNLLPLGYKSIEKLIHFLNIHLKRVNSHGLFMSILQAKKWWNISDRSKLYSDEFLYVY 181

Query: 98  DRN--------------------DKAMIYGPTHEE----VMTDIFRSHIKSYRNLPFTFY 133
            +                     D  +I  PT EE    ++  ++  +I + ++LP   +
Sbjct: 182 KQKQQKGDMSKVNETVMTKKKMEDDGLILSPTCEEQAICLINQVYNENIPA-KSLPLLIH 240

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-S 192
           Q   KFR+E R    + +S+EFLMKD YSF         +Y+     Y +IF  L L   
Sbjct: 241 QFNYKFRNEKRLEKTLFKSKEFLMKDGYSFHSNDICLNETYDSYKECYGKIFSDLKLPFK 300

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGE 218
           +  + +   +    SHEF VL   G+
Sbjct: 301 VTKKRKMDKMNALESHEFQVLCRDGK 326



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 36/161 (22%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E  HIF  G  YS  +   +     + + + MGSYGIG  R++  +++S +D  GI  P+
Sbjct: 329 EAAHIFKLGDYYSKKLGIKYLNKRNEKNNILMGSYGIGIYRLLYFLVDSFYDDDGIRLPE 388

Query: 343 SVAPFKISLINIKAHDQVCRDACEKI---------------------------------- 368
            +APF + LI      +       KI                                  
Sbjct: 389 QIAPFSVYLIQTNQRSKYSATKVAKIVKMAQVTDAVEAMDAPNMATPPLNSNDVEYVLTL 448

Query: 369 --YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
             Y        D+++DD    +  +    DL+G P ++I+ 
Sbjct: 449 WLYNTFKNSNVDIYYDDTDLHLSRKLKNCDLIGVPNRIIIN 489


>gi|169829542|ref|YP_001699700.1| threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
 gi|168994030|gb|ACA41570.1| Threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
          Length = 643

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 186/433 (42%), Gaps = 38/433 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFTTS-QKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++    R E+     G+ R R   + DA+ F + P+  K  + K+    L
Sbjct: 351 SYRSLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIF-VRPDQIKAEFQKVVQLIL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    L     R         LS+      D  +T+ + + D M     S   +  D 
Sbjct: 410 EVYKDFDLNDYSFR---------LSYR-----DPADTEKYFNDDAMWEKAQSMLKEAMDE 455

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + L+    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    +
Sbjct: 456 LGLDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----S 504

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DGK H   +   G+ +   R VA +IE   + KG  +P  +AP ++ +I +   ++
Sbjct: 505 YVGEDGKPHRPVVIHRGVVSTMERFVAFLIE---EYKG-AFPTWLAPVQVEVIPVS--NE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V    V ++
Sbjct: 559 AHFDYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEAKGVNVR 618

Query: 420 HRLTGIREDMSLE 432
              +   E +S E
Sbjct: 619 RYGSKDSETISFE 631


>gi|108758355|ref|YP_634772.1| prolyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|123073939|sp|Q1CXV1|SYP_MYXXD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108462235|gb|ABF87420.1| prolyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 483

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 139/341 (40%), Gaps = 75/341 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   F   I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 114 PTSETIINRSFAKWIQSYRDLPLLLNQWANVMRWEMRTRL-FLRTTEFLWQEGHTCHETE 172

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++    +M   Y R F                                      ++D+
Sbjct: 173 EDAEKETRQMLEVY-RTF--------------------------------------AEDY 193

Query: 228 MDFPI----PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           M  P+     SE+  F   +   SI                    +++ ++K+     ++
Sbjct: 194 MAMPVMTGQKSESERFAGALRTYSI--------------------EAMMQDKK----ALQ 229

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G     G  ++      F+G DGK H+V   S+G+ + R++  +I +  D  G+I P  
Sbjct: 230 AGTSHNLGQNFAKAFDTQFQGRDGKMHHVWQTSWGV-STRLIGGLIMTHSDDAGLIVPPK 288

Query: 344 VAPFKISLINI--KAHDQVCRDACEK---IYARLSKVGCDVFWDDMGEQI-GSQFAVADL 397
           +A   + +I I  KA D       EK   + A L K G  V  DD   +  G ++   +L
Sbjct: 289 LAATHVVIIPIFGKASDAEKAQVLEKTNALAADLRKAGLGVVLDDDDTKSPGFKYNEHEL 348

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G  L++ +G K ++ +   +  R    +E +SL+E ++ A
Sbjct: 349 IGTCLRIELGPKDLAKNSCVMVRRDVRQKEFVSLDEAVSKA 389


>gi|172038860|ref|YP_001805361.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171700314|gb|ACB53295.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 608

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 164/429 (38%), Gaps = 66/429 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG + +Y ++M  + 
Sbjct: 222 GLPLWTPKGTIIRSTLEDFLKQEQLKRGYLPVVTPHIGRVDLFKISGHWQNYKEDMFPMM 281

Query: 98  DRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
              ++A       +  P +      I++S ++SYR+LP    +    +R E      G+ 
Sbjct: 282 AETEEAKTSEMGFVLKPMNCPFHIQIYKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLT 341

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F + D++ F +TP+     +  +    L +F  L LK+   R              
Sbjct: 342 RVRGFTVDDSHLF-VTPDQLDDEFLNVVDLILSVFRSLQLKNFKAR-------------- 386

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                            + F  P+     D  I  N   E W     A          D 
Sbjct: 387 -----------------LSFRDPNS----DKYIGSN---EAWNKAENAIRRAVQTLEMDY 422

Query: 271 LPENKRVSARGIEVGHIF--------YFGT---KYSLP--MSATFKGADGKDHY-VQMGS 316
                  +  G ++  IF          GT    Y+LP      + G +G  H  V +  
Sbjct: 423 FEAEGEAAFYGPKLDFIFQDALEREWQLGTVQVDYNLPERFELEYVGEEGNRHRPVMIHR 482

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
              G++  +  ++   + G   +W   +AP ++ L+ +     V  D  + +  ++  +G
Sbjct: 483 APFGSLERLIGILIEEYAGDFPLW---LAPTQVRLLPV---SDVQLDYVKDVANKMLSLG 536

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D  GE++G      +    P+  IVG+K V  + + I+ R +G    M+++EVI 
Sbjct: 537 IRAEADTSGERLGKMIRNGEKQKIPVMAIVGAKEVEANALSIRTRASGELGTMAVDEVIE 596

Query: 437 YASHRFSNN 445
             +   +N+
Sbjct: 597 KLNDAITNH 605


>gi|298675789|ref|YP_003727539.1| prolyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288777|gb|ADI74743.1| prolyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 479

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++VG   + G  ++      ++  +G+  Y     YGI + R +AA+I    D KG+
Sbjct: 223 GRTLQVGTAHHLGNNFAKTFDIEYEDPNGEQVYAYQSCYGI-SERCIAAMISVHGDDKGL 281

Query: 339 IWPDSVAPFKISLIN--IKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           I P  +AP ++ +I    K  D +   DAC+ +   L   G     D    + G+++   
Sbjct: 282 ILPPEIAPVQVIIIPIIFKNKDKESILDACKNVKGSLESAGVKTKIDTSDRRPGAKYYRW 341

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G PL++ +G K + +  V +  R TG +E ++++E+ +  + +F +
Sbjct: 342 EMKGVPLRIEIGPKDLKNESVMMVRRDTGDKEQIAMDEINDTVASKFES 390



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 5/159 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+Y W P G        +IIRE  +R     +    +   +   E+     + +E+  +
Sbjct: 36  KGLYVWNPFGFSIRKKTYSIIRELLDRDHEETLFPLLIPENEFMKETKHIKGFEEEVYWV 95

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                  +       PT E  +  I++  ++S+ +LP  +YQI   FR E +    ++R 
Sbjct: 96  THGGTSPLEVNLALRPTSETAIYPIYKLWVRSHADLPIKYYQIVNTFRYETKHTRPLIRL 155

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           RE    K+A++   T E +    ++    Y   + RL L
Sbjct: 156 REITSFKEAHTVHETWEDAAAQVDEAIDRYHEFYERLCL 194


>gi|229175285|ref|ZP_04302800.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228608117|gb|EEK65424.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 645

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 174/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              ++ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP +  +I + 
Sbjct: 506 ---SYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQAQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|124023562|ref|YP_001017869.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166225478|sp|A2CAU4|SYT_PROM3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123963848|gb|ABM78604.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9303]
          Length = 640

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 157/416 (37%), Gaps = 90/416 (21%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GMI  H+KG   +  L Q         IRE  +     E+  P +    LW +SG ++ +
Sbjct: 261 GMIFWHAKGWAIYQVLEQ--------YIRETLSLHAYQEIRTPQVVDRSLWEKSGHWEKF 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             +M      N +  I  P +      IF   +KSYR+LP    +     R+E      G
Sbjct: 313 KDDMFTTTSENREYAI-KPMNCPCHVQIFNQGLKSYRDLPIRLAEFGSCLRNEPSGSLHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F+  DA+ F  T    +   +K       I+   G  S+ ++  + P   +G D
Sbjct: 372 LMRVRNFVQDDAHIF-CTELQVQEEVSKFIDLVFEIYRSFGFDSVLIKLSTRPEKRVGSD 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                                                       E W     A SD  + 
Sbjct: 431 --------------------------------------------EIWDKSEKALSDALDA 446

Query: 266 K--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADGKD--- 309
           K   +D LP         IE      +G ++  GT    +S+P  + A++   D +    
Sbjct: 447 KGLAWDLLPGEGAFYGPKIEFSLKDCLGRVWQCGTIQVDFSMPERLGASYVAEDSQRRTP 506

Query: 310 ---HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDAC 365
              H   +GS+     R +  +IE  + G+  +W   +AP +++++ I   + Q C+D C
Sbjct: 507 VMLHRAILGSFE----RFIGILIE-HYAGRMPVW---LAPVQVAVMGITDRNAQTCQDVC 558

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +K+ A   +   D+      E+IG +     L   P  +I+G K     +V ++ R
Sbjct: 559 KKLSALEYRTEVDL----RNEKIGFKVREHTLQRVPFLIIIGDKEQQSGEVAVRTR 610


>gi|195441810|ref|XP_002068665.1| GK18335 [Drosophila willistoni]
 gi|298206800|ref|YP_003714979.1| prolyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849432|gb|EAP87300.1| prolyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|194164750|gb|EDW79651.1| GK18335 [Drosophila willistoni]
          Length = 492

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +GK  YV   S+G+ + R++ A+I +  D KG+
Sbjct: 234 GKALQAGTSHFLGQNFAEAFDVKFTSKEGKQEYVWASSWGV-STRLMGALIMTHSDDKGL 292

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P ++AP ++ ++ I  +D+      E+   +   L  VG  V +D     + G +FA 
Sbjct: 293 VLPPNLAPIQVVIVPIYRNDEQFNAISEEAKLLTEELRAVGISVKFDGRDTHKPGWKFAQ 352

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +L G PL++ +G K + +  VE+  R T  +E +  E+V+  A
Sbjct: 353 YELQGVPLRIAIGPKDLENGTVELARRDTLTKEFVKREDVVAKA 396



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK ++    + ++ ++  PT E ++ + ++  I+SYR+LP    Q     R E+R R   
Sbjct: 105 GKLIVDPEAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLTPE---GSKHSYNKMFVSYLRIF 185
           +R+ EFL ++ ++   T E         N ++  ++  F
Sbjct: 164 LRTAEFLWQEGHTAHATREEALAETEQMNNIYAEFVENF 202


>gi|302389803|ref|YP_003825624.1| YbaK/prolyl-tRNA synthetase associated region [Thermosediminibacter
           oceani DSM 16646]
 gi|302200431|gb|ADL08001.1| YbaK/prolyl-tRNA synthetase associated region [Thermosediminibacter
           oceani DSM 16646]
          Length = 489

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 1/101 (0%)

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A+ E   D  G+IWPD +AP+K+ +I +   D+   D   K+Y  L+K+   +  DD
Sbjct: 364 LILAIAEKHCDDSGLIWPDFIAPYKVVVIPVNTKDERLLDRSIKVYEELNKIMPTII-DD 422

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +  G +F  A+LLGFP+++ +G + +     EI  R TG
Sbjct: 423 RPQSPGVKFKDAELLGFPIRITIGPRSLEKGVAEINLRRTG 463


>gi|224541864|ref|ZP_03682403.1| hypothetical protein CATMIT_01036 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525214|gb|EEF94319.1| hypothetical protein CATMIT_01036 [Catenibacterium mitsuokai DSM
           15897]
          Length = 479

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  ++   + TF   D K  +V   S+G+ + R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHYFGQGFAKAFNMTFLDKDNKLKHVYQTSWGV-STRLLGAIIMVHGDDNGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ +I I+       +  ++I A+L   G  V  D   +  G +F+ A++ 
Sbjct: 284 VLPPRLAPTQVVIIPIQQKKAGVLEKADEIAAQLKAAGMRVSVDASDKSPGWKFSEAEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P+++ VG + + +    +  R  G++  M L+E +  A H
Sbjct: 344 GIPVRIEVGPRDIENGHCVVVKRNDGVKTQMDLDENLPQAIH 385


>gi|229083697|ref|ZP_04216020.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
 gi|228699626|gb|EEL52288.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
          Length = 476

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 159/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   +G   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENIQKVMDEKLKASGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQEETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + TD +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTDKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +   +    +  R+ KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVIIVPIAQHKEGVLEKAAGLQERIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQL 376


>gi|313203193|ref|YP_004041850.1| prolyL-tRNA synthetase [Paludibacter propionicigenes WB4]
 gi|312442509|gb|ADQ78865.1| prolyl-tRNA synthetase [Paludibacter propionicigenes WB4]
          Length = 490

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 91/164 (55%), Gaps = 5/164 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++     TF     K  YV   S+G+ + R++ A+I +  D  G++
Sbjct: 234 KALQAGTSHFLGQNFAKAFDVTFMDKSNKLDYVWATSWGV-STRLMGALIMTHSDDNGLV 292

Query: 340 WPDSVAPFKISLINI-KAHDQVCR-DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P ++APF++ ++ I K  +Q+   DA  +++  +L  +G  V +D+   ++ G +FA  
Sbjct: 293 LPPNLAPFQVVIVPIYKNEEQLAAIDAKVDEMIPKLKALGISVKYDNNDNKKPGWKFAEY 352

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +L G P+++ +G++ + +  VE+  R T  +E +++E V NY S
Sbjct: 353 ELKGVPVRLALGARDLENGTVEVARRDTLTKETVAIEGVENYIS 396



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 87  DSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           D  GK ++   D + ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R 
Sbjct: 100 DPNGKGLIVDPDAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPILINQWANVVRWEMRT 159

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           R   +R+ EFL ++ ++   T   +     KM   Y     R 
Sbjct: 160 RL-FLRTAEFLWQEGHTAHATEAEAVTEARKMLEVYADFAERF 201


>gi|229159541|ref|ZP_04287556.1| Prolyl-tRNA synthetase 2 [Bacillus cereus R309803]
 gi|228623946|gb|EEK80757.1| Prolyl-tRNA synthetase 2 [Bacillus cereus R309803]
          Length = 502

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 159/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 122 VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 178

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 179 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 212

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + TD +             A Y   S +H+    
Sbjct: 213 ------------FC-EDYLAIPVIKGQKTDKEKFAGAK-------ATYTIESLMHD---- 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 249 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +   +   ++  R+  V   V  D   +  
Sbjct: 298 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQNVA-RVKVDVSNKTP 356

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 357 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 402


>gi|206889512|ref|YP_002249047.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741450|gb|ACI20507.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 617

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 157/388 (40%), Gaps = 41/388 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +    ++E  + G   +  P +   DLW +SG  D Y + M    
Sbjct: 242 GLIIWLPNGAIVRKIIEDFWKDEHLKAGYQLLYTPHIARLDLWRKSGHLDFYRENMYSPM 301

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++ A    P +      +++S ++SYR LP  F ++   +R E      G++R R F 
Sbjct: 302 EIDEIAYQLKPMNCPFHIQVYKSELRSYRELPLRFAELGTVYRYERSGVLHGLLRVRGFT 361

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  T E  +    K+    + I    G  +  +   + P       +++   + 
Sbjct: 362 QDDAHIF-CTEEQLEEEIQKVLDFTVFILSTFGFTAYDIYISTRP------EKYVGSIEN 414

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E   F     ++  + + N  +        I       Y    D+   K+ D L  N+ 
Sbjct: 415 WEKATFA----LEEALKTRNLPY-------QIDPGEGVFYGPKIDI---KIKDVL--NRS 458

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
                I+V         +++P     T++G DGK+H  + +    +G++     V+   +
Sbjct: 459 WQCSTIQVD--------FNIPERFDITYRGKDGKEHRPIMIHRALMGSLERFMGVLIEHY 510

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   +AP +I +++I        D   ++Y +L      V  +   E+IG +  
Sbjct: 511 AGAFPLW---LAPVQIEVMSISEKHA---DYAARVYRQLINNDFRVKLNIDNEKIGYKIR 564

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            A L   P  VI+G K + ++ + ++ R
Sbjct: 565 NATLNKVPYMVIIGDKEIENNAITVRKR 592


>gi|325103166|ref|YP_004272820.1| prolyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324972014|gb|ADY50998.1| prolyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 490

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 24/217 (11%)

Query: 249 VEQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            E W A P        NE+   +L     E      + ++ G   + G  ++      F 
Sbjct: 197 AENWLALPVVRGKKTANERFAGALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFT 256

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCR 362
             +GK  +V   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I K  +++ R
Sbjct: 257 SKEGKQEFVWATSWGV-STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPINKGEEELAR 315

Query: 363 DA--CEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                + I A+L   G  V +DD   Q  G +FA  ++ G P+++ +G + + ++ +E+ 
Sbjct: 316 ITVVADDIIAQLKAKGISVKYDDRDTQRPGFKFAEYEMKGVPVRLAIGGRDLDNNTIEVA 375

Query: 420 HRLTGIREDMS-----------LEEVIN---YASHRF 442
            R T  +E MS           LEE+ N     +HRF
Sbjct: 376 RRDTRTKETMSRDNIADVVESLLEEIQNNIYQKAHRF 412



 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 114 EEELIVRPTSETIIWNTYKGWIQSYRDLPILVNQWANVVRWEMRTRL-FLRTAEFLWQEG 172

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T E +     KM   Y
Sbjct: 173 HTAHATREEAVEETEKMLEVY 193


>gi|149374489|ref|ZP_01892263.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149361192|gb|EDM49642.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 641

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 179/450 (39%), Gaps = 79/450 (17%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      KL L    + + + G+  W P G      +   +R +Q++
Sbjct: 229 KAYLHRLEEAEKRDHRKIGKKLSLF--HMQEEAPGMVFWHPDGWSLYQEIEQYMRGKQHK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+  P + S  LW +SG +D +  +M    ++++D A+   P +      +F   +
Sbjct: 287 HGYQEIKTPQVVSRALWEKSGHWDKFKDDMFTTESEKHDYAI--KPMNCPCHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSY++LP    +     R+E      G+MR R F   DA+ F       + +  +    +
Sbjct: 345 KSYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIF-----CEEDAIQQEVSDF 399

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + + H                         + AD G T++     +     P +    D+
Sbjct: 400 IGMLHE------------------------IYADFGFTEIL----YKLSTRPEKRVGSDE 431

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIE------VGHIFYFGT- 292
           +         W    AA  +  N +  D   LP         IE      +G ++  GT 
Sbjct: 432 V---------WDKSEAALEEALNREGVDWELLPGEGAFYGPKIEFSLKDCIGRVWQCGTI 482

Query: 293 --KYSLP--MSATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +S+P  + A +   + +       H   +GS+     R +  +IE  ++G    W  
Sbjct: 483 QVDFSMPGRLGAQYVADNSERKTPVMLHRAVLGSF----ERFIGILIE-EYEGAFPTW-- 535

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP +I+++NI  +    RD C+ +  +   +G  V  D   E+IG +     +   P 
Sbjct: 536 -LAPTQIAVLNITDNQ---RDYCQNLAKKWDSLGYRVNADLRNEKIGFKIREHTINKVPF 591

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            V++G K V ++ V ++ R       +SLE
Sbjct: 592 LVVIGDKEVENNAVAVRTRKGEDLGTLSLE 621


>gi|326789266|ref|YP_004307087.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326540030|gb|ADZ81889.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 586

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 173/441 (39%), Gaps = 57/441 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T  I     G   +LP G    + +    R+   R G
Sbjct: 184 YLQSIEEAKKRDHRKLGKELGLFT--ILDEGPGFPFFLPKGMVLKNLLIDYWRKLHTREG 241

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            +E+S P + + +LW  SG +D Y + M   + D  D A+   P +      +++    S
Sbjct: 242 YVEISTPMMLNKELWETSGHWDHYRENMYTTVIDDTDFAI--KPMNCPGGMLVYKLQPHS 299

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ L  R E      G+MR R F   DA+ F +T E        +      
Sbjct: 300 YRELPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIF-MTQEQITDEIKGVVRLIDE 358

Query: 184 IFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           ++ + G K    +  R E+  IG D                       D+ + +E     
Sbjct: 359 VYSKFGFKYHVELSTRPENS-IGSD----------------------EDWNVATEGLKKA 395

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D++     I E   A Y    D H E   DS+        R  + G I      + LP+
Sbjct: 396 LDEMQLEYVINEGDGAFYGPKIDFHLE---DSI-------GRTWQCGTI---QLDFQLPV 442

Query: 299 --SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A + GADGK H  + +     G++     ++   + GK  +W   +AP ++ ++ I 
Sbjct: 443 RFEAEYIGADGKKHRPIMIHRVVFGSIERFIGILIEHYAGKFPLW---LAPVQVKVLPIS 499

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D+        + A L K G     D+  E+IG +   A L   P  V+VG K V  + 
Sbjct: 500 --DKFSEYGA-FVMAELQKQGIRCEIDNRDEKIGYKIREAQLGKVPYMVVVGQKEVESNL 556

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           V I+ R    +E  S++E + 
Sbjct: 557 VTIRRRDESTQEGYSIQEFVQ 577


>gi|313623625|gb|EFR93788.1| threonyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 640

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 169/403 (41%), Gaps = 36/403 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P + + +L+  SG +D Y ++M   
Sbjct: 260 QGLPLWLPKGATIRRVIERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPT 319

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      I+++ I SYR LP    ++ +  R E+     G+ R R  
Sbjct: 320 MKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    +K    R         LS+      D
Sbjct: 380 TLNDAHVF-VRPDQIKDEFKRVVELILEVYKDFDIKDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     +      D + ++    E   A Y    DV   ++  ++ + 
Sbjct: 425 PKNTEKYFDDDAMWEKAQAMLKSAMDEMHMDYFEAEGEAAFYGPKLDV---QVKTAIGKE 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA +IE  
Sbjct: 482 ETLSTVQLD----FLLPERFDL----TYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY 533

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ LI + A   +  D  + +  +L + G     DD  E++G + 
Sbjct: 534 ---KG-AFPTWLAPVQMELIPVNADAHL--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKI 587

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A     P  +++G + V    V ++   +   E M L+  I
Sbjct: 588 REAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETMDLDAFI 630


>gi|269119235|ref|YP_003307412.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613113|gb|ACZ07481.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 634

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 172/414 (41%), Gaps = 53/414 (12%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    + +H  G   ++P G + ++ +  I R E  + G  E+  P 
Sbjct: 236 EAEKRDHRKLGKQLNLFFLDEHGPGFPFFMPKGMEVINKLQEIWRREHKKAGYKEIKTPV 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +   +LW  SG + +Y +E +  ++ ++K     P +       +++++ SY+N P  + 
Sbjct: 296 MLDKELWEISGHWFNY-RENMYTSEIDEKEYAIKPMNCPGAILAYKNNLHSYKNFPLKYG 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ L  R E      G+MR R F   DA+ F  T +  +    ++   Y R +   G + 
Sbjct: 355 EMGLVHRHEFSGALHGLMRVRAFTQDDAHVF-CTEDQIEDQIMEIINLYDRFYKLFGFE- 412

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P     S E   +A+   T     K  +D+ +   +  F             
Sbjct: 413 YNIELSTKPDKAIGSDEIWDIAERDLTNALV-KMGIDYKLNPGDGAF------------- 458

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLPMS--ATFKGADG 307
              Y    D    K+ DS             +G I+  GT    ++LP+    ++ G DG
Sbjct: 459 ---YGPKIDF---KMKDS-------------IGRIWQCGTIQLDFNLPLRFHMSYIGPDG 499

Query: 308 KDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++   + G   IW   +AP ++S++ I        +   
Sbjct: 500 EKHQPVMIHRAMYGSIERFMGILIEHYAGAFPIW---LAPVQVSILTISGEQA---EYAS 553

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVEIK 419
            ++ +L  +G     D   E+IG +   A+     P+Q+I+G   V++++V I+
Sbjct: 554 DLFKKLQNIGIRTELDIRDEKIGYKIREANAEQKIPIQLIIGKNEVANNEVNIR 607


>gi|322392280|ref|ZP_08065741.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144815|gb|EFX40215.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 647

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 163/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRILERYIVDKEVAAGYQHVYTPPIASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +     ++++ H+ SYR LP    +I +  R E      
Sbjct: 314 REDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + PE  +  + K+    + ++    L     R         LS
Sbjct: 374 GLQRVREMSLNDGHTF-VAPEQIEDEFKKILQLIIDVYEDFNLTDYRFR---------LS 423

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSD 261
           +      D  +   +   D M      EN         DD+       E   A Y    D
Sbjct: 424 YR-----DPADKHKYFDNDEM-----WENAQRMLKAAVDDMGVEYYEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG++H   M   G I 
Sbjct: 474 I---QMKTALGKEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I +     V  D   ++  +L   G  V 
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTVIPVSNEKHV--DYAWEVAKKLRDRGVRVD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D+  E++  +   +     P Q+IVG K + ++ V ++
Sbjct: 578 VDERNEKMQFKIRASQTQKIPYQLIVGDKEMDENAVNVR 616


>gi|293610405|ref|ZP_06692706.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|292827637|gb|EFF86001.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|325124561|gb|ADY84084.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 640

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 158/415 (38%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG   +Y  
Sbjct: 255 MQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYLEIKTPQIVDFTLWEKSGHAANYAD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSENRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLEVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDMAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP  + A++   D  +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPERLDASYVTEDNDRDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +ACEK+ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLSPLQACVMNITDSQA---EACEKVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|164685973|ref|ZP_01946163.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218739|ref|YP_002305526.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|164601497|gb|EAX33218.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013001|gb|ACJ20381.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 660

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 168/440 (38%), Gaps = 77/440 (17%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+L+ +   + H    S G   W P G   +  +   IR   ++ G  E+  P 
Sbjct: 246 EAEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIRHITHKYGYQEVHTPQ 305

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L  A LW +SG  + +G ++  L     + +I  P        IF   +KSYR+LP  + 
Sbjct: 306 LIDASLWDKSGHLEKFGDDIFSLPLEPQQYVI-KPMSCPAHVQIFNQGVKSYRDLPLRYA 364

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F    E    S    F+  L          
Sbjct: 365 EFGACHRNEPSGTLHGLMRLRGFVQDDAHIF--CTEDQIQSEVSAFIDQL---------- 412

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                          HE  V AD G T+V           P +    D++         W
Sbjct: 413 ---------------HE--VYADFGFTEVIHKLSTR----PEKRVGSDEV---------W 442

Query: 253 TAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
           T    A ++  N K   +D LP         IE      +G I+  GT    +S+P  + 
Sbjct: 443 TKAEQALAEAFNRKGVEWDILPGEGAFYGPKIEFSLRDCLGRIWQCGTVQVDFSVPERLG 502

Query: 300 ATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           A +   DG        H   +GS+     R +  ++E S  GK  +W   +AP ++ ++N
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSF----ERFLGILLEESA-GKLPLW---LAPVQVVVMN 554

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D   +    L  +G     D   E+IG +     +   P  V++G + V+D
Sbjct: 555 ITDRQA---DYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVAD 611

Query: 414 SKVEIKHRLTGIREDMSLEE 433
             + ++         ++LEE
Sbjct: 612 KTLSVRALEDEASTTITLEE 631


>gi|319892730|ref|YP_004149605.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162426|gb|ADV05969.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464237|gb|ADX76390.1| threonyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 645

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 167/388 (43%), Gaps = 37/388 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEISLGYDHVYTPVMANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             + D+AM+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDADEAMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + DA+ F + P+  K  + ++    L ++   G +    R +       +  ++   + 
Sbjct: 382 TLNDAHIF-VRPDQIKEEFKRVVQMILDVYEDFGFEDYKFRLSYRDKADKEKYYDDDDMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +T E  +  + D M+ P       +++ I          A Y    DV   ++  ++ + 
Sbjct: 441 NTAEAMLKEAVDEMNLP-------YEEAIG-------EAAFYGPKLDV---QVKTAMGKE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    K+ L    T+ G DG+ H   +   G+ +   R VA + E +
Sbjct: 484 ETLSTAQLD----FLLPKKFEL----TYIGKDGEHHRPVVIHRGVVSTMERFVAFLTEET 535

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +  ++ +  D   +I+  L   G  V  DD  E++G + 
Sbjct: 536 ---KG-AFPTWLAPQQVEIIPV--NNDLHYDYARQIHDELKSQGVRVHIDDRNEKMGYKI 589

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             A +   P Q++VG K + +++V ++ 
Sbjct: 590 REAQMKKIPYQLVVGDKELENNEVNVRQ 617


>gi|262341274|ref|YP_003284129.1| proline-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272611|gb|ACY40519.1| proline-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 488

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 132/330 (40%), Gaps = 67/330 (20%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R  + ++  PT E ++   ++  I+SYR+LP    Q     R E       MR+R FL  
Sbjct: 110 RLQEELVIRPTSESIIWKTYKRWIQSYRDLPVLLNQWGNALRWE-------MRTRLFLRT 162

Query: 159 DAYSFDLTPEG-SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
             +   L  EG + HS  K  +                  E+  I  ++  +F       
Sbjct: 163 TEF---LWQEGHTAHSTKKEAIE-----------------EANKIL-NIYTDF------- 194

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                 S++FM  P+            L  I       Y +      E L          
Sbjct: 195 ------SENFMAIPV------------LQGIKPHMDKFYGSEKTYCIEALMQD------- 229

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + +++G   + G  +S      F   +GK  YV   S+G+ + R++  +I S  D KG
Sbjct: 230 -GKALQIGTSHFLGQNFSKAFDVQFTNYNGKKEYVWSTSWGV-STRLIGGLIMSHSDDKG 287

Query: 338 IIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFA 393
           +I P  +AP +I +I I  + +   +  D  EKI   L +    V +D+ +    G +F 
Sbjct: 288 LILPPKIAPIQIVIIPIYKNKEKFGIINDVVEKILNVLEQERIRVKYDNRVTFTPGWKFH 347

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++ G PL++ +GS  + + KVEI  R T
Sbjct: 348 EYEMKGVPLRISIGSNEIKNEKVEIFRRDT 377


>gi|229019800|ref|ZP_04176603.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229026025|ref|ZP_04182408.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228735241|gb|EEL85853.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228741525|gb|EEL91722.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 645

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 174/424 (41%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              ++ G DGK H   +   G+ +   R VA +IE     KG  +P  +AP +  +I + 
Sbjct: 506 ---SYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQAQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|47096724|ref|ZP_00234309.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898274|ref|ZP_05258198.1| threonyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912233|ref|ZP_05262245.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936561|ref|ZP_05268258.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|47014908|gb|EAL05856.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609155|gb|EEW21763.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590208|gb|EFF98542.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 640

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/436 (21%), Positives = 183/436 (41%), Gaps = 38/436 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R         LS+      D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFR---------LSYR-----DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + ++    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    +
Sbjct: 452 MEMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----S 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ LI + A   
Sbjct: 501 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMELIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++
Sbjct: 557 L--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVR 614

Query: 420 HRLTGIREDMSLEEVI 435
              +   E M L+  I
Sbjct: 615 RYGSKDSETMDLDAFI 630


>gi|295698321|ref|YP_003602976.1| threonyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157332|gb|ADD79777.1| threonyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 414

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 159/424 (37%), Gaps = 63/424 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q+S G   W P G      +   IR +       E+  P +    LW ++G   +Y K M
Sbjct: 32  QNSPGSVFWNPNGLIIFQELKRYIRLKLKEYQYQEVKTPEILHKSLWKKTGHLQNYEKYM 91

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
            +++  + K  +  P +      IF+  I+SYR+LP    +     R+EL     G+MR 
Sbjct: 92  FKVSSESRKYCL-KPMNCPGHIKIFQQKIRSYRDLPLRIAEFGNCHRNELSGSLHGLMRV 150

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF   DA+ F  T E       K       ++   G K I +R  + P           
Sbjct: 151 REFTQDDAHIF-CTKEQVFEEIKKCIGMVQEVYKTFGFKKISIRLATRP----------- 198

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  Q    + + D+                SI+E+             EK FD LP
Sbjct: 199 ------KQRIGEEKYWDYA--------------ESILEKAL-----------EKEFDLLP 227

Query: 273 ENKRVSARGIE------VGHIFYFGT---KYSLPMSATFKGADGKD---HYVQMGSYGIG 320
           EN       IE      +   +  GT    + LP+       D K+   H + +    +G
Sbjct: 228 ENGAFYGPKIEFTLHDRLEREWQCGTIQLDFLLPIQLGVFYIDQKNKKQHPMIIHRAILG 287

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++   + G     P  ++P ++ +I++    +   +  +KI  R+   G  V+
Sbjct: 288 SIERFIGILIEHYSG---YLPTWLSPIQVVVISV---SKKYINFSKKIVQRIKYAGIRVY 341

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D   E+I  +     +   P  V+ G K      V I+ +L  + + +S+E  I   S 
Sbjct: 342 HDLKNEKINLKIRKHSINKIPYIVLCGEKEEKTGSVSIRRKLEKVIKTISIENFIKMVSS 401

Query: 441 RFSN 444
             +N
Sbjct: 402 EINN 405


>gi|145591039|ref|YP_001153041.1| prolyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|166980145|sp|A4WJ22|SYP_PYRAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145282807|gb|ABP50389.1| prolyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 488

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 162/411 (39%), Gaps = 75/411 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG Y W P G +   +V  +IR   + TG  E+  P     + +  ES     + KE+  
Sbjct: 40  KGAYVWRPYGMRLRRHVEELIRRSHDETGHQEVLFPVFIPYEFFGKESQHIRGFEKEVFW 99

Query: 96  LADRNDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++   ++   ++  PT E  +  + +  +  Y++LP   YQI   FR E +    ++R R
Sbjct: 100 VSKGGEEGERLVLRPTSETAIMPMVKLWVHDYKDLPLRLYQIVSVFRAETKMTHPMIRLR 159

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           E  M K+A++  +  E ++    +    Y +IF  + L  +                   
Sbjct: 160 EISMFKEAHTVHVDREDAERQVREAVEIYKKIFDEMCLAYM------------------- 200

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                   +    D+  F        FD ++     ++  T  Y  T+            
Sbjct: 201 --------INKRPDWDKFAGAEYTIAFDTVLPDGRTLQIGTVHYLGTN------------ 240

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R  EV ++   GT+                      SYGI + R +AA++ + 
Sbjct: 241 -----FTRVFEVTYLAADGTR----------------RLAHTTSYGI-SERSIAAMLITH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI-YAR-----LSKVGCDVFWDDMGE 386
            D  G + P  +AP ++ ++ I   ++   +A   I YAR     L + G  V  DD  +
Sbjct: 279 GDDAGTVLPPRLAPIQVVIVPIFYGEE---EAASVISYAREVEKALREAGMRVHIDDRPD 335

Query: 387 QI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  G +F   +L G PL+V VG + +   +V I  R T  +  + L E+++
Sbjct: 336 KTPGWKFYFWELKGVPLRVEVGKRDLEKRQVVITRRDTLEKYAVGLGELVD 386


>gi|313113439|ref|ZP_07799028.1| prolyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624166|gb|EFQ07532.1| prolyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 479

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG K+S     TF G D + H+    S+G+ + R+V A+I +  D  G+
Sbjct: 226 GKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV-STRLVGAIIMTHGDDDGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           I P +VAP ++ ++ I AH     +   ++  ++SK    V  DD     G +F+  ++ 
Sbjct: 285 ILPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKYA-RVKLDDSDNAPGWKFSQWEMK 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ +G K +  ++  +  R T  +  +SL+E+
Sbjct: 344 GVPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDEL 379


>gi|315282482|ref|ZP_07870886.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613866|gb|EFR87606.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 640

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 183/436 (41%), Gaps = 38/436 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELDLFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R         LS+      D   T+ +   D M     S      D 
Sbjct: 406 EVYKDFDIKDYSFR---------LSYR-----DPKNTEKYFDDDAMWEKAQSMLKSAMDE 451

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + ++    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 452 MGMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ LI + A   
Sbjct: 501 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMELIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  +  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++
Sbjct: 557 L--NYAKGVQDKLQRAGLRSEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVR 614

Query: 420 HRLTGIREDMSLEEVI 435
              +   E M L+  I
Sbjct: 615 RYGSKDSETMDLDAFI 630


>gi|295101509|emb|CBK99054.1| prolyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 479

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG K+S     TF G D + H+    S+G+ + R+V A+I +  D  G+
Sbjct: 226 GKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV-STRLVGAIIMTHGDDDGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           I P +VAP ++ ++ I AH     +   ++  ++SK    V  DD     G +F+  ++ 
Sbjct: 285 ILPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKYA-RVKLDDSDNAPGWKFSQWEMK 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ +G K +  ++  +  R T  +  +SL+E+
Sbjct: 344 GVPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDEL 379


>gi|260437797|ref|ZP_05791613.1| proline--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292809821|gb|EFF69026.1| proline--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 479

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 163/412 (39%), Gaps = 72/412 (17%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSY 89
           M +   KG   + P G    +N+ A + +    TG   + +P  +  + L  E    + +
Sbjct: 32  MGYSSVKGCMIFKPAGYAIWENIKAELDKRFKETGVENVYMPMFIPESLLQREKDHVEGF 91

Query: 90  GKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDEL 143
             E+  +     +   + M   PT E +  D ++  I+SYR+LP  + Q    +++  E 
Sbjct: 92  APEVAWVTYGGLNPLQERMCVRPTSETLFCDFYKDEIQSYRDLPKVYNQWCSVVRWEKET 151

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP    +RSREFL ++ ++   T E ++    +M   Y                      
Sbjct: 152 RP---FLRSREFLWQEGHTAHATAEEAEARTQQMLNLY---------------------- 186

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                     AD      FC +DF+  P+     TD +             A Y   + +
Sbjct: 187 ----------AD------FC-EDFLAIPVVRGRKTDKEKFAGAE-------ATYTIEALM 222

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           H+ K   S              G    FG  ++      +   D K  YV   S+G+   
Sbjct: 223 HDGKALQS--------------GTSHNFGDGFAKAFGIQYTDKDNKLKYVHQTSWGM-TT 267

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R++ A+I    D  G++ P  VAP ++ +I +        +   ++  +L K G  V  D
Sbjct: 268 RLIGALIMVHGDDSGLVLPPRVAPVQVDIIPVMQKKAGVLEKAAEVKEKLIKAGLRVKVD 327

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           D  +  G +F+  ++ G P+++ +G + +  ++  I  R T  +  +S++E+
Sbjct: 328 DSDKNPGWKFSEQEMRGIPVRIEMGPRDIEANQAVIVRRDTREKTVVSIDEL 379


>gi|212550461|ref|YP_002308778.1| threonyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229470721|sp|B6YQ95|SYT_AZOPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212548699|dbj|BAG83367.1| threonyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 648

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/465 (20%), Positives = 185/465 (39%), Gaps = 91/465 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+Y   + +   RD      ++ L T   H+  +G+  WLP G +    +   ++  Q +
Sbjct: 230 SEYLALMEKAKKRDHRRIGKEMELFT-FSHKVGRGLPLWLPKGTQLRLRLEDFLKRIQKK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND--KAMIYGPTHEEVMTDIFRSH 121
            G  ++  P + +  L++ SG Y  YGK+  +     +  +  +  P +     +I+++ 
Sbjct: 289 YGYQQVITPHIGNKTLYIASGHYAKYGKDSFQPIHTPELGEEFLLKPMNCPHHCEIYKAF 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP    +    +R E      G+ R R F   DA+ F  +PE  K    K+ + 
Sbjct: 349 LRSYKELPLRLAEFGTVYRYERSGELQGLTRVRGFTQDDAHIF-CSPEQVKEELIKV-ID 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +R+                                    +FC+ +F D+ +     D +
Sbjct: 407 IVRV------------------------------------IFCALNFNDYEVQISLRDLN 430

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK------- 293
           + I      E W     A  +V  E         K++ A+ I++G   ++G K       
Sbjct: 431 NRIKYIGSEENWKNSEGAIIEVCQE---------KKIKAK-IKLGEAAFYGPKLDFMVKD 480

Query: 294 --------------YSLP--MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDG 335
                         Y+LP      + GAD + H  V +     G+M R VA +IE +  G
Sbjct: 481 ALGRNWQLGTIQVDYNLPERFELEYVGADNQKHRPVMIHRAPFGSMERFVAVMIEHT-GG 539

Query: 336 KGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           K  +W   D V    +S    + ++Q   +  ++ + R  +V      D   E++G +  
Sbjct: 540 KFPLWLVSDQVVILPVS----ENYNQYAEEIAKEFHKRDIRVTI----DKRNEKVGRKIR 591

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +L   P  +I+G K   +S++ ++      +E++ + +V  +A
Sbjct: 592 DNELKKIPYLLIIGEKERRNSEISVRKHG---KENIGIMKVTEFA 633


>gi|295706837|ref|YP_003599912.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804496|gb|ADF41562.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 645

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 163/389 (41%), Gaps = 40/389 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG ++ Y  +M   
Sbjct: 266 QGLPLWLPKGATIRRIIERYIVDKEVSLGYQHVYTPVLGSVELYKTSGHWEHYQDDMFPA 325

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      +++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 326 MEMDNEDLVLRPMNCPHHMMVYKQGIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 385

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++      ++   G ++   R         LS+      D
Sbjct: 386 TLNDAHIF-VRPDQIKEEFIRVVRLVEAVYKDFGFENYSFR---------LSYR-----D 430

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   D  D + L+    E   A Y    DV   ++  +L + 
Sbjct: 431 PADTEKYFDDDAMWEKAQSMLKDAMDELDLDYYEAEGEAAFYGPKLDV---QVKTALGKE 487

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 488 ETLSTVQLD----FLLPERFDL----TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY 539

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I +    H Q  ++  E+    L   G  V  D   E+IG 
Sbjct: 540 ---KG-AFPTWLAPVQVQVIPVSPTVHLQYAKEVQEQ----LQLAGIRVELDSRDEKIGY 591

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   A +   P  ++VG K V D  V ++
Sbjct: 592 KIREAQMQKIPYMLVVGDKEVEDKAVNVR 620


>gi|163938386|ref|YP_001643270.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163860583|gb|ABY41642.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 476

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 163/406 (40%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   +G   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ ++      PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLVERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+       +  L I +                       
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQ-------IETLNILNLYA-------------------- 185

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC ++++  P I  + T+ +             A Y   S +H+    
Sbjct: 186 -----------AFC-EEYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKVA-RVKIDVSNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|304382923|ref|ZP_07365405.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304335948|gb|EFM02196.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 654

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 157/408 (38%), Gaps = 49/408 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R+ Q   G  E+  P + S +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTELRLRLQGMLRKIQKNYGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     ++F    +SY++LP    +    +R E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVFSWKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   PE  K  + ++      +F     K++  +              I L
Sbjct: 383 SFTQDDAHIF-CRPEQVKSEFLRVMDIIQTVFKVFDFKNVEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D +      E+++        SI+E            + E  F     
Sbjct: 428 RDPNDREKYIGSDEV-----WEHSE-------QSIIEACKEKGLNAKIAYGEAAFYGPKL 475

Query: 274 NKRVSARGIEVGHIFYFGT---KYSLPMSATFKGA---DGKDHYVQMGSYGIGAMRVVAA 327
           +  V      +G  +  GT    Y+LP     +     + K   V +     G+M    A
Sbjct: 476 DFMVKD---AIGRRWQLGTIQVDYNLPQRFKLEYTADDNSKQTPVMIHRAPFGSMERFTA 532

Query: 328 VIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           V+     G   +W  PD VA   IS        +   D   K+   L  VG     D+  
Sbjct: 533 VLIEHTAGHFPLWLTPDQVAILPIS--------EKFNDYARKVAHYLDSVGVRANIDERN 584

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           E+IG +    ++   P  VIVG K  ++  V ++ +  G +  MS+E+
Sbjct: 585 EKIGRKIRDNEIKRVPYMVIVGEKEAAEGLVSMRKQGGGEQATMSMED 632


>gi|325982725|ref|YP_004295127.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532244|gb|ADZ26965.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 635

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 162/400 (40%), Gaps = 52/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R   +  G  E+  P +   DLWV SG ++++ +
Sbjct: 255 MQDEASGMVFWHPKGWTLWQQIEQYMRNILSHNGYHEIRTPQILDKDLWVRSGHWENFRE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +   +++     P +      IF   ++SYR LP  F +     R+E      G+M
Sbjct: 315 NMF-ITHSDERDFAIKPMNCPGHVQIFNQGLRSYRELPIRFAEFGSCHRNEASGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHE 209
           R R F   DA+ F    E         F+  L+I +   G + I ++  + P        
Sbjct: 374 RVRAFTQDDAHIF--CTEDQIQQEVVEFIDLLKIVYADFGFREILIKLSTRP-------- 423

Query: 210 FIVLADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              L   G E Q   S+  ++              +LN +  +W          +  K+ 
Sbjct: 424 ---LKRVGSEAQWDKSEAALE-------------AALNEVKLEWERQ-PGEGAFYGPKIE 466

Query: 269 DSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAM 322
            SL +          +G ++  GT    +S+P  + A +   D      V +    +G++
Sbjct: 467 FSLKDC---------IGRLWQCGTLQLDFSMPDRLGAEYVAEDNSRQVPVMLHRAILGSL 517

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  ++ G   +W   ++P ++ ++NI +  Q+  D  +K+ A+L + G     D
Sbjct: 518 ERFIGILIENYAGALPLW---LSPEQVVVLNI-SRTQI--DYAQKVVAQLKENGVRASLD 571

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E+I  +     L   P Q+IVG + V  +K+ +++R+
Sbjct: 572 LRNEKITYKIREHSLQKLPYQIIVGDEEVRANKIAVRNRV 611


>gi|126698152|ref|YP_001087049.1| threonyl-tRNA synthetase [Clostridium difficile 630]
 gi|254974173|ref|ZP_05270645.1| threonyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091574|ref|ZP_05321052.1| threonyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255099679|ref|ZP_05328656.1| threonyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255313300|ref|ZP_05354883.1| threonyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515991|ref|ZP_05383667.1| threonyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255649082|ref|ZP_05395984.1| threonyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|306519197|ref|ZP_07405544.1| threonyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|123066930|sp|Q189B8|SYT_CLOD6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115249589|emb|CAJ67406.1| Threonyl-tRNA synthetase [Clostridium difficile]
          Length = 639

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 165/424 (38%), Gaps = 45/424 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI +   G   +LP G +  + +    RE   + G IE+  P + +  LW  SG +  Y 
Sbjct: 254 MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESPIILNRKLWETSGHWYHY- 312

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +       + S + SYR+ P    ++    R EL     G+
Sbjct: 313 KENMYTVKIDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRVAELGRVHRHELSGALQGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           MR R F   D++ F + PE  K     +      I+   G +    +  R E+  +G D 
Sbjct: 373 MRVRAFTQDDSHIF-MLPEQIKDEIKGVANLIDGIYKTFGFEYNLELSTRPENS-MGSDE 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A+ G  +     + +  P               +I E   A Y    D H   
Sbjct: 431 EWE---AAENGLREAL---EELGLPY--------------TINEGDGAFYGPKIDFH--- 467

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           L D L        R  + G I     +       T+ G DG+ H  V +     G++   
Sbjct: 468 LKDCL-------GRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHRPVMIHRVAFGSIERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P ++ ++ I   D+   D   ++   L   G  V  DD  
Sbjct: 520 IGILIEHYAGKFPVW---LSPTQVKILPIS--DKFM-DYANEVKKELFDKGIRVELDDRA 573

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + L+E I   S    + 
Sbjct: 574 EKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIKLDEFIASISKEIESR 633

Query: 446 RPVL 449
             ++
Sbjct: 634 ESII 637


>gi|260682273|ref|YP_003213558.1| threonyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685872|ref|YP_003217005.1| threonyl-tRNA synthetase [Clostridium difficile R20291]
 gi|260208436|emb|CBA60998.1| threonyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211888|emb|CBE02332.1| threonyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 670

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 165/424 (38%), Gaps = 45/424 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI +   G   +LP G +  + +    RE   + G IE+  P + +  LW  SG +  Y 
Sbjct: 285 MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESPIILNRKLWETSGHWYHY- 343

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +       + S + SYR+ P    ++    R EL     G+
Sbjct: 344 KENMYTVKIDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRVAELGRVHRHELSGALQGL 403

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           MR R F   D++ F + PE  K     +      I+   G +    +  R E+  +G D 
Sbjct: 404 MRVRAFTQDDSHIF-MLPEQIKDEIKGVANLIDGIYKTFGFEYNLELSTRPENS-MGSDE 461

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A+ G  +     + +  P               +I E   A Y    D H   
Sbjct: 462 EWE---AAENGLREAL---EELGLPY--------------TINEGDGAFYGPKIDFH--- 498

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           L D L        R  + G I     +       T+ G DG+ H  V +     G++   
Sbjct: 499 LKDCL-------GRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHRPVMIHRVAFGSIERF 550

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P ++ ++ I   D+   D   ++   L   G  V  DD  
Sbjct: 551 IGILIEHYAGKFPVW---LSPTQVKILPIS--DKFM-DYANEVKKELFDKGIRVELDDRA 604

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + L+E I   S    + 
Sbjct: 605 EKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIKLDEFIASISKEIESR 664

Query: 446 RPVL 449
             ++
Sbjct: 665 ESII 668


>gi|189461814|ref|ZP_03010599.1| hypothetical protein BACCOP_02480 [Bacteroides coprocola DSM 17136]
 gi|189431408|gb|EDV00393.1| hypothetical protein BACCOP_02480 [Bacteroides coprocola DSM 17136]
          Length = 646

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 159/429 (37%), Gaps = 67/429 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +      I+++  +SYR+LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCMIYKNTPRSYRDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K  + ++      +F  +GL++   +              I 
Sbjct: 380 RSFTQDDAHIF-CRPDQVKDEFLRVMDIISIVFKSMGLENFEAQ--------------IS 424

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D    + +   D                       E W     A  +   EK   +  
Sbjct: 425 LRDKVNREKYIGSD-----------------------ENWEKAEQAIVEACEEKGLKAKV 461

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      + G+D + H  V +    
Sbjct: 462 EYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYMGSDNQKHRPVMIHRAP 521

Query: 319 IGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            G+M R VA +IE +  GK  +W  PD VA   IS        +   D   ++   L K 
Sbjct: 522 FGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYANQVRLELKKS 572

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                 DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M +E+  
Sbjct: 573 DIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVRKQGEGDKGTMKIEDFA 632

Query: 436 NYASHRFSN 444
              +    N
Sbjct: 633 KNVAEEVHN 641


>gi|295397522|ref|ZP_06807604.1| proline--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974252|gb|EFG49997.1| proline--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 502

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 5/157 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + I+ G   Y G  ++      F   D +  YV   S+G  + R++ A+I    D +G+
Sbjct: 238 TKAIQAGTSHYLGQNFAEAFDIKFLNEDNQHTYVHTTSWG-SSTRLIGAMIMIHGDEQGL 296

Query: 339 IWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           + P  VA  ++SLI   NIK + QV  +  ++I A LS  G  V  DD     G +F  +
Sbjct: 297 VLPPRVAGTQVSLIPVGNIKKNPQVL-EKLQEIKATLSAAGLRVNLDDSNNSPGYKFNES 355

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           ++ G PL++  G + + +++V IK R    +E  SL+
Sbjct: 356 EVHGVPLRIEFGPRDMENNQVMIKMRDVDGKEAFSLD 392


>gi|304317243|ref|YP_003852388.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778745|gb|ADL69304.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 634

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 174/447 (38%), Gaps = 54/447 (12%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLNMLEEAKKRDHRKLGKELDLFS--IHNEGPGFPFFHPKGMVIRNILEDFWRKEHAKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            +E+  P + + +LW  SG +D Y + M     D  D A+   P +      ++ S + S
Sbjct: 288 YLEIKTPIILNEELWHRSGHWDHYKENMYFTKIDGEDYAI--KPMNCPGALLVYNSTMHS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP---EGSKHSYNKMFVS 180
           YR+LP    ++ L  R EL     G+MR R F   DA+ F +TP   E       K+   
Sbjct: 346 YRDLPLRLCELGLVHRHELSGALHGLMRVRSFTQDDAHLF-MTPDQVESEILGVIKLIDY 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +IF       +  R E+  IG D   E    A     +       +D+ +   +  F 
Sbjct: 405 FYKIFGFDYFVELSTRPENS-IGSDEDWELATNALIKAMEHIG----LDYKVNEGDGAF- 458

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                          Y    D H   L DS+        R  + G I      + +P   
Sbjct: 459 ---------------YGPKIDFH---LKDSI-------GRTWQCGTI---QLDFQMPERF 490

Query: 299 SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +  + G DG+ H  V +     G++    A++  +  G    +P  +AP ++ ++ I   
Sbjct: 491 NCEYVGQDGEKHRPVMLHRVVFGSIERFIAILTENFAGA---FPTWLAPVQVRILPISDK 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   + I  RL +    V  DD  E+IG +   A +   P  +I+G K V    V 
Sbjct: 548 HLAY---AQNIQQRLLENDIRVELDDRNEKIGYKIREAQMQKIPYMLILGDKEVESGNVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R  G     S++E ++       N
Sbjct: 605 VRSRKDGDIGSKSMQEFLSSILEEIKN 631


>gi|229829763|ref|ZP_04455832.1| hypothetical protein GCWU000342_01860 [Shuttleworthia satelles DSM
           14600]
 gi|229791752|gb|EEP27866.1| hypothetical protein GCWU000342_01860 [Shuttleworthia satelles DSM
           14600]
          Length = 479

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 171/432 (39%), Gaps = 77/432 (17%)

Query: 1   MRRSKYFLPILQENPRDAEIAS-HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAII 57
           M + K F+  +   PR  + A  +  +++   + Q+S  KG   + PLG    +N+   +
Sbjct: 1   MAKDKKFVEEI--TPRSEDFAQWYTDVVKKAELMQYSSLKGFMIYKPLGYAIWENIQKNM 58

Query: 58  REEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEE 112
                 TG   + +P L    L   E+   + +  E+  +         + +   PT E 
Sbjct: 59  DAMFKETGVENVYMPLLMPESLLKKEAEHVEGFAPEVAWVTQGGIQPLQERLAIRPTSET 118

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           +  D++ + ++SYR+LP  + Q    +++    RP    +RS EFL ++ ++   T E +
Sbjct: 119 LFCDLYSTIVQSYRDLPKVYNQWCSVVRWEKTTRP---FLRSSEFLWQEGHTAHATAEEA 175

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +    +M   Y                                AD      FC K ++  
Sbjct: 176 EARTIQMLNVY--------------------------------AD------FCEK-YLAI 196

Query: 231 P-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           P I    TD +             A Y   + +H+ K   S              G    
Sbjct: 197 PVIKGRKTDKEKFAGAE-------ATYTIETLMHDGKALQS--------------GTSHN 235

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           FG  ++      +   + +  YV   S+G+ + R++ A+I    D  G++ P  +AP +I
Sbjct: 236 FGDGFARAYGIQYTDKNNQLRYVHQTSWGV-STRLIGAIIMVHGDDSGLVLPPRIAPVQI 294

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ +    +   +  E++  +L K G  V  DD  +  G +FA A++ G PL++ VG K
Sbjct: 295 VIVPVMQQKEGVLEKAEELRQQLQKAGFSVKLDDSEKSPGWKFAEAEMRGIPLRIEVGPK 354

Query: 410 FVSDSKVEIKHR 421
            +   +V +  R
Sbjct: 355 DIEKEQVVMVRR 366


>gi|255654593|ref|ZP_05400002.1| threonyl-tRNA synthetase [Clostridium difficile QCD-23m63]
          Length = 639

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 163/421 (38%), Gaps = 39/421 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI +   G   +LP G +  + +    RE   + G IE+  P + +  LW  SG +  Y 
Sbjct: 254 MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESPIILNRKLWETSGHWYHY- 312

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +       + S + SYR+ P    ++    R EL     G+
Sbjct: 313 KENMYTVKIDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRVAELGRVHRHELSGALQGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   D++ F + PE  K     +      I+   G +   +   + P     S+E
Sbjct: 373 MRVRAFTQDDSHIF-MLPEQIKDEIKGVANLIDGIYKTFGFE-YNLELSTRPENSMGSNE 430

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+ G  +     + +  P               +I E   A Y    D H   L D
Sbjct: 431 EWEAAENGLREAL---EELGLPY--------------TINEGDGAFYGPKIDFH---LKD 470

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
            L        R  + G I     +       T+ G DG+ H  V +     G++     +
Sbjct: 471 CL-------GRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHRPVMIHRVAFGSIERFIGI 522

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + GK  +W   ++P ++ ++ I   D+   D   ++   L   G  V  DD  E+I
Sbjct: 523 LIEHYAGKFPVW---LSPTQVKILPIS--DKFM-DYANEVKKELFDKGIRVELDDRAEKI 576

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +   A L   P  +IVG K V+D+ V ++ R  G    + L+E I   S    +   +
Sbjct: 577 GFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIKLDEFIASISKEIESRESI 636

Query: 449 L 449
           +
Sbjct: 637 I 637


>gi|73919786|sp|Q83C10|SYT_COXBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 651

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 165/435 (37%), Gaps = 67/435 (15%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+L+ +   + H    S G   W P G   +  +   IR   ++ G  E+  P 
Sbjct: 237 EAEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIRHITHKYGYQEVHTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L  A LW +SG  + +G ++  L     + +I  P        IF   +KSYR+LP  + 
Sbjct: 297 LIDASLWDKSGHLEKFGDDIFSLPLEPQQYVI-KPMSCPAHVQIFNQGVKSYRDLPLRYA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F    E    S    F+  L          
Sbjct: 356 EFGACHRNEPSGTLHGLMRLRGFVQDDAHIF--CTEDQIQSEVSAFIDQL---------- 403

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                          HE  V AD G T+V           P +    D++         W
Sbjct: 404 ---------------HE--VYADFGFTEVIHKLSTR----PEKRVGSDEV---------W 433

Query: 253 TAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
           T    A ++  N K   +D LP         IE      +G I+  GT    +S+P  + 
Sbjct: 434 TKAEQALAEALNRKGVEWDILPGEGAFYGPKIEFSLRDCLGRIWQCGTVQVDFSVPERLG 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG K   V +    +G+      ++     GK  +W   +AP ++ ++NI    
Sbjct: 494 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVVMNITDRQ 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 551 A---DYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 607

Query: 419 KHRLTGIREDMSLEE 433
           +         ++LEE
Sbjct: 608 RALEDEASTTITLEE 622


>gi|321312429|ref|YP_004204716.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|291485328|dbj|BAI86403.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320018703|gb|ADV93689.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 643

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 166/406 (40%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y + M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKEISLGYEHVYTPVLGSKELYETSGHWDHYQEGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMIYKQDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFIRTVRLIQDVYEDFGLSDYTFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   +  D I  +    E   A Y    DV   ++  ++ + 
Sbjct: 429 PEDTEKYFDDDEMWNKAQSMLKEAMDEIGHDYYEAEGEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYIGEDGKQHRPVVIHRGVVSTMERFVAFLIE-E 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL + G  V  D   E+IG + 
Sbjct: 537 HKGALPTW---LAPVQFQVIPVSP--AVHLDYAKKVQERLQREGLRVEVDSRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E +SL+E +  A
Sbjct: 592 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQNSETISLDEFVKKA 637


>gi|255305562|ref|ZP_05349734.1| threonyl-tRNA synthetase [Clostridium difficile ATCC 43255]
          Length = 639

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 165/424 (38%), Gaps = 45/424 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI +   G   +LP G +  + +    RE   + G IE+  P + +  LW  SG +  Y 
Sbjct: 254 MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESPIILNRKLWETSGHWYHY- 312

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +       + S + SYR+ P    ++    R EL     G+
Sbjct: 313 KENMYTVKIDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRVAELGRVHRHELSGALQGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           MR R F   D++ F + PE  K     +      I+   G +    +  R E+  +G D 
Sbjct: 373 MRVRAFTQDDSHIF-MLPEQIKDEIKGVANLIDGIYKTFGFEYNLELSTRPENS-MGSDE 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A+ G  +     + +  P               +I E   A Y    D H   
Sbjct: 431 EWE---AAENGLREAL---EELGLPY--------------TINEGDGAFYGPKIDFH--- 467

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           L D L        R  + G I     +       T+ G DG+ H  V +     G++   
Sbjct: 468 LKDCL-------GRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHRPVMIHRVAFGSIERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P ++ ++ I   D+   D   ++   L   G  V  DD  
Sbjct: 520 IGILIEHYAGKFPVW---LSPTQVKILPIS--DKFM-DYANEVKKELFDKGIRVELDDRA 573

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + L+E I   S    + 
Sbjct: 574 EKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIKLDEFIASISKEIESR 633

Query: 446 RPVL 449
             ++
Sbjct: 634 ESII 637


>gi|229099037|ref|ZP_04229971.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229118067|ref|ZP_04247426.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228665290|gb|EEL20773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228684265|gb|EEL38209.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 645

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 173/424 (40%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               + G DGK H   +   G+ +   R VA +IE     KG  +P  +AP +  +I + 
Sbjct: 506 ---AYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQAQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|332655151|ref|ZP_08420892.1| proline--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516011|gb|EGJ45620.1| proline--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 480

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   YFG  ++     TF G D + HY    S+G+ + R++  +I +  D  G++
Sbjct: 227 KALQSGTSHYFGDGFARAFDITFTGKDNQLHYPHQTSWGV-STRMIGGIIMTHGDNNGLV 285

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P  +AP +  +I +  H +   DA   +  RL   G     D   + +G + A  ++ G
Sbjct: 286 LPPRIAPIQAMVIPVAQHKEGVLDAATDLLNRLKAAGIRASMDASDQSMGWKAAQYEMKG 345

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG 424
            PL+V +G K +   +  I  R +G
Sbjct: 346 VPLRVEIGPKDMEKGQCCICRRDSG 370



 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG++ + P G    +N+ A + +    TG   + +P L   + L  E    + +  E   
Sbjct: 39  KGVFIYRPYGYAIWENIQAELDKRFKETGHENVYLPMLIPESLLQKEKDHVEGFAPECAW 98

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    +++ ++     PT E +  + ++S I S+R+LP  + Q    L++    RP    
Sbjct: 99  VTYGGSEKLEERYCIRPTSETLFCEHYKSIIHSHRDLPKLYNQWCSVLRWEKTSRP---F 155

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +R REFL ++ ++   T E ++    +M   Y
Sbjct: 156 LRHREFLWQEGHTMHATEEEARQETQQMLNIY 187


>gi|237733955|ref|ZP_04564436.1| prolyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|229383036|gb|EEO33127.1| prolyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 479

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  ++      F   + K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 224 GKALQSGTSHYFGQGFAKAFDMKFLSKENKLEYVYQTSWGV-STRLLGAIIMVHGDNNGL 282

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ +I I+       D   +I  +L + G  V  D   +  G +F+ A++ 
Sbjct: 283 VLPPRVAPTQVMIIPIQQQKAGVLDKAYEIEKQLKEAGIRVKVDASDKSPGWKFSEAEMR 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL-EEVIN 436
           G PL++ +G K + ++   I  R  G +E  +L +E+IN
Sbjct: 343 GVPLRLEIGPKDIENNACVIAKRNDGTKEKYALDQELIN 381


>gi|330445795|ref|ZP_08309447.1| threonyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489986|dbj|GAA03944.1| threonyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 643

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 160/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   +RE+ N     E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWTIFRELEVFVREKLNEYDYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   + + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTEAQVQQEVTSCIEMVY-DTYKTFGFDNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E+ +  + + M+ P                I E   A Y    +     L
Sbjct: 433 ----AMWDKAESDLVTALESMNIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 472 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        +  ++I  +L K G  V  D  
Sbjct: 522 FIGILIEDYAG---FFPTWLAPQQAVVMNIT---DAQSEYVQEIVEKLKKCGIRVNADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G K V    V ++ R         ++E++ +     S+
Sbjct: 576 NEKIGFKIREHTLKRVPFMLVCGDKEVEAGVVAVRTRKGKDLGKFKIDELVAFMQEEISS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|257869188|ref|ZP_05648841.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803352|gb|EEV32174.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 646

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 170/416 (40%), Gaps = 48/416 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + + DL+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMANVDLYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D ++F + P+  K  + +     + ++    +     R +   P   D   +   + 
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLDLMVEVYKDFNVTDYRFRLSYRDPENKDKYFDDDAMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  +T +  + D +       N D+ +        E   A Y    DV   ++  +L   
Sbjct: 441 ENAQTMLKAAMDEL-------NLDYFE-------AEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  ++ AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVDAHS----DYAYEIKERLQSQGLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIRE-----DMSLEEVINYA 438
           +   + +   P Q++VG + V D+ V I+    + T + E     D    EV NY+
Sbjct: 589 KIRASQMQKIPYQLVVGDQEVKDATVNIRRYGSKETNVEELNIFVDAMAAEVKNYS 644


>gi|257438845|ref|ZP_05614600.1| proline--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257198660|gb|EEU96944.1| proline--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 479

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   YFG K+S     TF G D + H+    S+G+ + R+V A+I +  D  G+I
Sbjct: 227 KALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV-STRLVGAIIMTHGDDDGLI 285

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P +VAP ++ ++ I AH     +   ++  ++SK    V  DD     G +F+  ++ G
Sbjct: 286 LPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKYA-RVKLDDSDNAPGWKFSQWEMKG 344

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            PL++ +G K +  ++  +  R T  +  +SL+E+
Sbjct: 345 VPLRLEIGPKDLEKNQCVLVRRDTREKIFVSLDEL 379


>gi|228987823|ref|ZP_04147932.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158179|ref|ZP_04286246.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228625137|gb|EEK81897.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228771871|gb|EEM20328.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 645

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 173/424 (40%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               + G DGK H   +   G+ +   R VA +IE     KG  +P  +AP +  +I + 
Sbjct: 506 ---AYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQAQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|167756667|ref|ZP_02428794.1| hypothetical protein CLORAM_02205 [Clostridium ramosum DSM 1402]
 gi|167702842|gb|EDS17421.1| hypothetical protein CLORAM_02205 [Clostridium ramosum DSM 1402]
          Length = 479

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  ++      F   + K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 224 GKALQSGTSHYFGQGFAKAFDMKFLSKENKLEYVYQTSWGV-STRLLGAIIMVHGDNNGL 282

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ +I I+       D   +I  +L + G  V  D   +  G +F+ A++ 
Sbjct: 283 VLPPRVAPTQVMIIPIQQQKAGVLDKAYEIEKQLKEAGIRVKVDASDKSPGWKFSEAEMR 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL-EEVIN 436
           G PL++ +G K + ++   I  R  G +E  +L +E+IN
Sbjct: 343 GVPLRLEIGPKDIENNACVIAKRNDGTKEKYALDQELIN 381


>gi|296449369|ref|ZP_06891150.1| threonine--tRNA ligase [Clostridium difficile NAP08]
 gi|296880697|ref|ZP_06904650.1| threonine--tRNA ligase [Clostridium difficile NAP07]
 gi|296261715|gb|EFH08529.1| threonine--tRNA ligase [Clostridium difficile NAP08]
 gi|296428315|gb|EFH14209.1| threonine--tRNA ligase [Clostridium difficile NAP07]
          Length = 670

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 163/421 (38%), Gaps = 39/421 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI +   G   +LP G +  + +    RE   + G IE+  P + +  LW  SG +  Y 
Sbjct: 285 MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESPIILNRKLWETSGHWYHY- 343

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +       + S + SYR+ P    ++    R EL     G+
Sbjct: 344 KENMYTVKIDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRVAELGRVHRHELSGALQGL 403

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   D++ F + PE  K     +      I+   G +   +   + P     S+E
Sbjct: 404 MRVRAFTQDDSHIF-MLPEQIKDEIKGVANLIDGIYKTFGFE-YNLELSTRPENSMGSNE 461

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+ G  +     + +  P               +I E   A Y    D H   L D
Sbjct: 462 EWEAAENGLREAL---EELGLPY--------------TINEGDGAFYGPKIDFH---LKD 501

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
            L        R  + G I     +       T+ G DG+ H  V +     G++     +
Sbjct: 502 CL-------GRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHRPVMIHRVAFGSIERFIGI 553

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + GK  +W   ++P ++ ++ I   D+   D   ++   L   G  V  DD  E+I
Sbjct: 554 LIEHYAGKFPVW---LSPTQVKILPIS--DKFM-DYANEVKKELFDKGIRVELDDRAEKI 607

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +   A L   P  +IVG K V+D+ V ++ R  G    + L+E I   S    +   +
Sbjct: 608 GFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIKLDEFIASISKEIESRESI 667

Query: 449 L 449
           +
Sbjct: 668 I 668


>gi|315303326|ref|ZP_07873955.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628306|gb|EFR96810.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 640

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/436 (20%), Positives = 182/436 (41%), Gaps = 38/436 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++    +     R +   P   +   +   + D  +T +  + D M       + +   
Sbjct: 406 EVYKDFDITDYSFRLSYRDPKNTEKYFDDDAMWDKAQTMLKSAMDEMGMDYFEADGE--- 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 463 -----------AAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +   DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ LI + A   
Sbjct: 501 YIAEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMELIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++
Sbjct: 557 L--DYAKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVR 614

Query: 420 HRLTGIREDMSLEEVI 435
              +   E M L++ I
Sbjct: 615 RYGSKDSETMDLDKFI 630


>gi|260062396|ref|YP_003195476.1| threonyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88783959|gb|EAR15130.1| threonyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 646

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 65/432 (15%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T   H+  +G+  WLP G    + +   +++ Q + G
Sbjct: 231 YLHMLEEAKKRDHRKLGKELELFT-FSHKVGQGLPLWLPKGAALRERLEQFLKKAQKKAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG++  +     R D+  +  P +     +IF +   
Sbjct: 290 YEMVVTPHIGQKELYVTSGHYAKYGEDSFQPIHTPREDEEFLLKPMNCPHHCEIFNATPV 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E      G+ R R F   DA+ F  T +     +  +    L
Sbjct: 350 SYRDLPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTHDQLDEEFKNVIDLSL 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG ++   +              + + D  + + +  +                 
Sbjct: 409 YVLGSLGFENFTAQ--------------VSIRDPEKPEKYIGE----------------- 437

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT-- 292
                 VE W    AA      EK  D + E    +  G +        +G  +  GT  
Sbjct: 438 ------VENWEKAEAAIIHAATEKGLDFVIEPGEAAFYGPKLDFMVKDALGRQWQLGTIQ 491

Query: 293 -KYSLP--MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPF 347
             Y+LP     T+KG+D + H  V +     G+M R VA ++E +    G  +P  + P 
Sbjct: 492 VDYTLPERFDLTYKGSDNELHRPVMIHRAPFGSMERFVALLLEHT----GGNFPLWLTPQ 547

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  ++ +    +   +  +K+   L         D   E +G +   A++  +P  +IVG
Sbjct: 548 QAIVLPVSEKHE---NYAQKVLNSLENHEIRALLDARSETVGKKIREAEMGKYPFMIIVG 604

Query: 408 SKFVSDSKVEIK 419
            + ++D  + ++
Sbjct: 605 DQEMTDGTISVR 616


>gi|229032221|ref|ZP_04188194.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|229076078|ref|ZP_04209046.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|229105203|ref|ZP_04235852.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228678129|gb|EEL32357.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228706941|gb|EEL59146.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|228729001|gb|EEL80004.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 645

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 173/424 (40%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPADTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               + G DGK H   +   G+ +   R VA +IE     KG  +P  +AP +  +I + 
Sbjct: 506 ---AYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQAQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|218260218|ref|ZP_03475604.1| hypothetical protein PRABACTJOHN_01265 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224670|gb|EEC97320.1| hypothetical protein PRABACTJOHN_01265 [Parabacteroides johnsonii
           DSM 18315]
          Length = 526

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  +      TF   +GK+ Y    S+G+ + R++ A+I S  D  G+
Sbjct: 269 GKALQAGTSHFLGQNFGKAFDVTFIDKNGKNEYAWATSWGV-STRLIGALIMSHSDDNGL 327

Query: 339 IWPDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I I ++ +Q+ +  +    I A+L  +G  V +DD   ++ G +FA 
Sbjct: 328 VLPPHLAPIQVVIIPIYRSAEQLAQISEKVNGIVAKLKALGISVKFDDADNKKPGWKFAE 387

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++ +G + + ++ +E+  R T  +E ++ + +  Y  +
Sbjct: 388 YELKGVPVRLAMGGRDLENNTIEVMRRDTLEKETVTCDNIETYVQN 433



 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +R+ I+SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 147 AAKLEEELIIRPTSETIIWNTYRNWIQSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFL 205

Query: 157 MKDAYSFDLTPEGSKHSYNKM 177
            ++ ++   T E ++    KM
Sbjct: 206 WQEGHTAHATREEAEIEAKKM 226


>gi|162316930|ref|YP_424303.2| prolyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|114152214|sp|Q2SSG0|SYP_MYCCT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 474

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 158/392 (40%), Gaps = 73/392 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEM-- 93
           KG   + P G +  + +   + EE  +     +  P L    L+  E    D +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIAT 94

Query: 94  -LRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
             R+  +  ++ +   PT E +M D F + I SYR+LP  + Q    +++    RP    
Sbjct: 95  VTRVGQKQLEENLFIRPTSEVLMMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRP---F 151

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++          SYN+     L+I +               I    + E
Sbjct: 152 LRTSEFLWQEGHTV-------HSSYNEAENFCLKILN---------------IYEKFAKE 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            ++L       V C K        +E   F                 A   D +      
Sbjct: 190 ILLLP------VICGK-------KTEKEKF-----------------AGAKDTYT----- 214

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E+     + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I
Sbjct: 215 --IESLMFDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALI 271

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D  G++ P  ++P ++ +I IK  +Q+     E I  +LS    DV  D+  +  G
Sbjct: 272 MTHSDDNGLVLPSKISPIQVQIIQIKNTEQI-DQVVEIIKDKLSDYRIDV--DNSDKSFG 328

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + + A++ G P+++ +G + + ++++ I  R
Sbjct: 329 FKISEAEIKGIPIRIEIGPRDLENNQITISRR 360


>gi|254831960|ref|ZP_05236615.1| threonyl-tRNA synthetase [Listeria monocytogenes 10403S]
          Length = 640

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 169/403 (41%), Gaps = 36/403 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++ R G   +  P + + +L+  SG +D Y ++M   
Sbjct: 260 QGLPLWLPKGATIRRVIERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPT 319

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      I+++ I SYR LP    ++ +  R E+     G+ R R  
Sbjct: 320 MKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++    +K    R         LS+      D
Sbjct: 380 TLNDAHVF-VRPDQIKDEFKRVVELILEVYKDFDIKDYSFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     +      D + ++    E   A Y    DV   ++  ++ + 
Sbjct: 425 PKNTEKYFDDDAMWEKAQAMLKSAMDEMEMDYFEAEGEAAFYGPKLDV---QVKTAIGKE 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA +IE  
Sbjct: 482 ETLSTVQLD----FLLPERFDL----TYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY 533

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I + A   +  D  + +  +L + G     DD  E++G + 
Sbjct: 534 ---KG-AFPTWLAPVQMEIIPVNADAHL--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKI 587

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A     P  +++G + V    V ++   +   E M L+  I
Sbjct: 588 REAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETMDLDAFI 630


>gi|116490538|ref|YP_810082.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Oenococcus oeni
           PSU-1]
 gi|116091263|gb|ABJ56417.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Oenococcus oeni
           PSU-1]
          Length = 663

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 169/410 (41%), Gaps = 43/410 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   + E++ + G + +  P + + DL+  SG +D Y  +M    
Sbjct: 267 GLPVWLPNGAAIRRTIEDYLVEKERQNGYMNVYTPVVSNLDLYKRSGHWDHYRDDMFPAM 326

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRFGVMRSREF 155
             +D + +   P +     +IF    +SYR+LP+   +  Q+   ++     G+ R RE 
Sbjct: 327 TADDGEQLELRPMNCPSHIEIFEHEPRSYRDLPYRIAEFGQMHRWEKSGALTGLSRVREM 386

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLA 214
            + D ++  + PE  +  +  +      ++H  G               D  + F +   
Sbjct: 387 TLNDGHTV-VAPEQVEPEFKGILQLIRDVYHDFGFT-------------DQDYRFRLSYR 432

Query: 215 DTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           D   T+ +   D M +    +     DD+       E   A Y    D+   +   +L  
Sbjct: 433 DPKNTKKYYDDDAMWEHAQAALKRAMDDMGLDYFEAEGEAAFYGPKLDI---QFKTALGN 489

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESS 332
            + +S   ++      F  KY+        G DGKDH   +   G +G M    A +   
Sbjct: 490 EETMSTIQLDFLLPERFDMKYT--------GEDGKDHRPVLIHRGVVGTMERFVAFLIEK 541

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G+   W   +AP +  +I  N  AH    R+    IY++L K G  +  D+  E++G 
Sbjct: 542 YKGQFPTW---LAPVQAVVIPVNYGAHGDYARN----IYSKLMKDGRRIKLDNRDEKLGY 594

Query: 391 QFAVADL-LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL---EEVIN 436
               A + L  P  ++VG + + D+ V ++ R +   ++M +   EE+IN
Sbjct: 595 LIRDAQVNLKTPYILVVGDQELRDNSVTVRFRGSDQTKEMKIDEFEEMIN 644


>gi|219850181|ref|YP_002464614.1| YbaK/prolyl-tRNA synthetase associated region [Chloroflexus
           aggregans DSM 9485]
 gi|219544440|gb|ACL26178.1| YbaK/prolyl-tRNA synthetase associated region [Chloroflexus
           aggregans DSM 9485]
          Length = 531

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 260 SDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+    + D  P     R+   G  VG I     + +LP+    + A G++  + +   
Sbjct: 346 ADIAQAVVGDPCPRCGTARIEGYGAAVGTI-TAPYQTALPI----QDAGGQNRPLWIAGI 400

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +    ++   +E  HD +GI+WP ++AP  I L+ I   + V   A   +   L   G 
Sbjct: 401 ELDLEPLIHLGVEQHHDERGIVWPAAIAPVDIHLVTIGRGEAVV-TAAHTLATELRNAGW 459

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            V  DD  E+ G +F  ADL+G P +++V  K ++  +VE++ R
Sbjct: 460 SVLIDDRDERAGVKFNDADLIGAPWRLVVSEKLLAAGQVEVRRR 503



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 31/146 (21%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +  F   L++ P +A+  + +L+ R GM+   + G    LPLG   L  + AI+   
Sbjct: 1   MQLATLFGRTLRQAPAEADTLATQLLWRAGMLRTLNDGEPVLLPLGSAILRRLAAILGTA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ VPT  +A  W                               + +T + R 
Sbjct: 61  VQNDGAQEIVVPTTTTAS-W------------------------------SDTVTALARR 89

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR 146
            I SYR LP   +  + + R   RPR
Sbjct: 90  DIDSYRQLPQLLWSWRRRKRLATRPR 115


>gi|307565532|ref|ZP_07628012.1| proline--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307345691|gb|EFN91048.1| proline--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 493

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I I K  +Q+   ++  + +   L + G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKIAPIQVVIIPIFKGEEQLEQLKNKLQPVIDELREAGVTVKFDDSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++ +G + + ++ +E+  R T  +E +S + + +Y  H
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIEVMRRDTLEKESVSFDGITDYIKH 400


>gi|116754929|ref|YP_844047.1| prolyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121694244|sp|A0B9N3|SYP_METTP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116666380|gb|ABK15407.1| prolyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 478

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++VG     GT ++     T++   G+  YV    YGI   R +AA+I    D KG+
Sbjct: 225 GRTLQVGTAHLLGTNFAKTYEITYEDEHGEQRYVNQTCYGISE-RCIAALIAVHGDDKGL 283

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + P  VAP ++ ++ I     +   + C  I + L+     V  DD  E+ G++F   ++
Sbjct: 284 VLPWRVAPVQVVIVPIIFGEREPIIEVCRSIASTLAGRNIRVRLDDGDERPGAKFYKWEM 343

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G P+++ +G + + +  V I  R  G+R+ + ++E
Sbjct: 344 RGVPVRIEIGPRDIKNGVVTIVRR-DGVRKTLPMDE 378



 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  W P G     +V  II+E  +     E   P L    +   E+     +  E+  
Sbjct: 38  KGMSVWYPFGFALRSHVYQIIKELLD-VDHYETQFPLLIPETEFMKEAEHIKGFEDEVYW 96

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  D  +   PT E  +  + +  I+S+ +LP   YQI   FR E +    ++R
Sbjct: 97  VTHGGRDPLDIKLALRPTSETAIYPMLKLWIRSHADLPLRIYQIVNTFRYETKHTRPLIR 156

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            RE    K+A++   T E +          Y+  + RL +  +
Sbjct: 157 LREITSFKEAHTAHATWEEAAMQVEIAIQRYIEFYRRLAIPCL 199


>gi|165924098|ref|ZP_02219930.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|165916454|gb|EDR35058.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
          Length = 653

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 165/435 (37%), Gaps = 67/435 (15%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+L+ +   + H    S G   W P G   +  +   IR   ++ G  E+  P 
Sbjct: 246 EAEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIRHITHKYGYQEVHTPQ 305

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L  A LW +SG  + +G ++  L     + +I  P        IF   +KSYR+LP  + 
Sbjct: 306 LIDASLWDKSGHLEKFGDDIFSLPLEPQQYVI-KPMSCPAHVQIFNQGVKSYRDLPLRYA 364

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F    E    S    F+  L          
Sbjct: 365 EFGACHRNEPSGTLHGLMRLRGFVQDDAHIF--CTEDQIQSEVSAFIDQL---------- 412

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                          HE  V AD G T+V           P +    D++         W
Sbjct: 413 ---------------HE--VYADFGFTEVIHKLSTR----PEKRVGSDEV---------W 442

Query: 253 TAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
           T    A ++  N K   +D LP         IE      +G I+  GT    +S+P  + 
Sbjct: 443 TKAEQALAEALNRKGVEWDILPGEGAFYGPKIEFSLRDCLGRIWQCGTVQVDFSVPERLG 502

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG K   V +    +G+      ++     GK  +W   +AP ++ ++NI    
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVVMNITDRQ 559

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 560 A---DYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 616

Query: 419 KHRLTGIREDMSLEE 433
           +         ++LEE
Sbjct: 617 RALEDEASTTITLEE 631


>gi|229163567|ref|ZP_04291517.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228619949|gb|EEK76825.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 646

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 36/387 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG ++ Y   M   
Sbjct: 267 QGLPLWLPKGATIRRIIERYIVDKEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPS 326

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      ++++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 327 MEMDNEELVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 386

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K    ++    L ++   GL++   R         LS+      D
Sbjct: 387 TLNDAHIF-VRPDQIKEELKRVVNLTLEVYKDFGLENYSFR---------LSYR-----D 431

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ + + D M         +  D + L+    E   A Y    DV   ++  +L ++
Sbjct: 432 PADTKKYYADDEMWEKAQGMLKEAMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKD 488

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L     + G DGK H   +   G+ +   R VA +IE  
Sbjct: 489 ETLSTVQLD----FLLPERFEL----AYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY 540

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP +  +I +    QV  D  +K+   L + G  V  D   E+IG + 
Sbjct: 541 ---KG-AFPTWLAPVQAQVIPVSP--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKI 594

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
             A +   P  ++VG   V+++ V ++
Sbjct: 595 REAQMQKIPYMLVVGDNEVTENGVNVR 621


>gi|212212292|ref|YP_002303228.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010702|gb|ACJ18083.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 660

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 168/440 (38%), Gaps = 77/440 (17%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+L+ +   + H    S G   W P G   +  +   IR   ++ G  E+  P 
Sbjct: 246 EAEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIRHITHKYGYQEVHTPQ 305

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L  A LW +SG  + +G ++  L     + +I  P        IF   +KSYR+LP  + 
Sbjct: 306 LIDASLWDKSGHLEKFGDDIFSLPLEPQQYVI-KPMSCPAHVQIFNQGVKSYRDLPLRYA 364

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F    E    S    F+  L          
Sbjct: 365 EFGACHRNEPSGTLHGLMRLRGFVQDDAHIF--CTEDQIQSEVSAFIDQL---------- 412

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                          HE  V AD G T+V           P +    D++         W
Sbjct: 413 ---------------HE--VYADFGFTEVIHKLSTR----PEKRVGSDEV---------W 442

Query: 253 TAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
           T    A ++  N K   +D LP         IE      +G I+  GT    +S+P  + 
Sbjct: 443 TKAEQALAEALNRKGVEWDILPGEGAFYGPKIEFSLRDCLGRIWQCGTVQVDFSVPERLG 502

Query: 300 ATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           A +   DG        H   +GS+     R +  ++E S  GK  +W   +AP ++ ++N
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSF----ERFLGILLEESA-GKLPLW---LAPVQVVVMN 554

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D   +    L  +G     D   E+IG +     +   P  V++G + V+D
Sbjct: 555 ITDRQA---DYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVAD 611

Query: 414 SKVEIKHRLTGIREDMSLEE 433
             + ++         ++LEE
Sbjct: 612 KTLSVRALEDEASTTITLEE 631


>gi|254828206|ref|ZP_05232893.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600595|gb|EEW13920.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 640

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/436 (21%), Positives = 182/436 (41%), Gaps = 38/436 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R         LS+      D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFR---------LSYR-----DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + ++    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 452 MEMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ LI + A   
Sbjct: 501 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMELIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++
Sbjct: 557 L--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVR 614

Query: 420 HRLTGIREDMSLEEVI 435
              +   E M L+  I
Sbjct: 615 RYGSKDSETMDLDAFI 630


>gi|229015779|ref|ZP_04172758.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1273]
 gi|229021987|ref|ZP_04178545.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228739314|gb|EEL89752.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228745536|gb|EEL95559.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1273]
          Length = 476

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 160/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   +G   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|115608274|ref|XP_001177835.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
 gi|115609661|ref|XP_794293.2| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 89

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     G
Sbjct: 2   RALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCLG 61

Query: 108 PTHEEVMTDIFRSH-IKSYRNLPFTFYQ 134
           PTHEE +TDI       S++ LP   YQ
Sbjct: 62  PTHEEAVTDIVAGEKTLSHKRLPIKLYQ 89


>gi|215919162|ref|NP_820316.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|206584046|gb|AAO90830.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
          Length = 660

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 168/440 (38%), Gaps = 77/440 (17%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+L+ +   + H    S G   W P G   +  +   IR   ++ G  E+  P 
Sbjct: 246 EAEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIRHITHKYGYQEVHTPQ 305

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L  A LW +SG  + +G ++  L     + +I  P        IF   +KSYR+LP  + 
Sbjct: 306 LIDASLWDKSGHLEKFGDDIFSLPLEPQQYVI-KPMSCPAHVQIFNQGVKSYRDLPLRYA 364

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F    E    S    F+  L          
Sbjct: 365 EFGACHRNEPSGTLHGLMRLRGFVQDDAHIF--CTEDQIQSEVSAFIDQL---------- 412

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                          HE  V AD G T+V           P +    D++         W
Sbjct: 413 ---------------HE--VYADFGFTEVIHKLSTR----PEKRVGSDEV---------W 442

Query: 253 TAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
           T    A ++  N K   +D LP         IE      +G I+  GT    +S+P  + 
Sbjct: 443 TKAEQALAEALNRKGVEWDILPGEGAFYGPKIEFSLRDCLGRIWQCGTVQVDFSVPERLG 502

Query: 300 ATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           A +   DG        H   +GS+     R +  ++E S  GK  +W   +AP ++ ++N
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSF----ERFLGILLEESA-GKLPLW---LAPVQVVVMN 554

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D   +    L  +G     D   E+IG +     +   P  V++G + V+D
Sbjct: 555 ITDRQA---DYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVAD 611

Query: 414 SKVEIKHRLTGIREDMSLEE 433
             + ++         ++LEE
Sbjct: 612 KTLSVRALEDEASTTITLEE 631


>gi|111115231|ref|YP_709849.1| prolyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|123145721|sp|Q0SNA5|SYP_BORAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110890505|gb|ABH01673.1| prolyl-tRNA synthetase [Borrelia afzelii PKo]
          Length = 488

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 166/414 (40%), Gaps = 85/414 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG      P L     L  E    D +  E   + D   ++++      PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYGFLEKEKDHIDGFSPEFAIIKDAGGESLVEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVIRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SEN  
Sbjct: 174 LLILDVYKRF------------------------MEDYLAIPVFCGK-------KSENEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  S+                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSV--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPVEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVG 407
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG
Sbjct: 298 DEINKKILDYSDCVVHTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRIEVG 351


>gi|229009880|ref|ZP_04167100.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
 gi|228751498|gb|EEM01304.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
          Length = 476

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 162/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   +G   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+       +  L I +                       
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQ-------IETLNILNLYA-------------------- 185

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC ++++  P I  + T+ +             A Y   S +H+    
Sbjct: 186 -----------AFC-EEYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|216263860|ref|ZP_03435854.1| prolyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|215979904|gb|EEC20726.1| prolyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 488

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 166/414 (40%), Gaps = 85/414 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG      P L     L  E    D +  E   + D   ++++      PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYGFLEKEKDHIDGFSPEFAIIKDAGGESLVEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVIRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SEN  
Sbjct: 174 LLILDVYKRF------------------------MEDYLAIPVFCGK-------KSENEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  S+                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSV--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPVEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVG 407
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG
Sbjct: 298 DEINKKILDYSDCVVHTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRIEVG 351


>gi|260911765|ref|ZP_05918337.1| proline-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634091|gb|EEX52209.1| proline-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 493

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I I   D+  +    K   +  +L KVG  V +DD   ++ G ++A 
Sbjct: 295 VLPPRLAPIQVVVIPIGKGDEQMKAIANKLQPVIEQLRKVGVTVKYDDSDNKRPGFKYAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +L G P++V++G + + ++ VEI  R T  +E +  E
Sbjct: 355 YELKGIPVRVVMGGRDLENNTVEIMRRDTLEKETIGFE 392



 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I+S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIIRPTSETIIWNTYKNWIQSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEG 176

Query: 161 YSFDLT 166
           ++   T
Sbjct: 177 HTAHAT 182


>gi|284801950|ref|YP_003413815.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995092|ref|YP_003416860.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|284057512|gb|ADB68453.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060559|gb|ADB71498.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
          Length = 640

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/436 (21%), Positives = 182/436 (41%), Gaps = 38/436 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R         LS+      D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFR---------LSYR-----DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + ++    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 452 MEMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + A   
Sbjct: 501 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMEIIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++
Sbjct: 557 L--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVR 614

Query: 420 HRLTGIREDMSLEEVI 435
              +   E M L+  I
Sbjct: 615 RYGSKDSETMDLDAFI 630


>gi|229131392|ref|ZP_04260291.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
 gi|228652083|gb|EEL08021.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
          Length = 476

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 162/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   +G   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+       +  L I +                       
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQ-------IETLNILNLYA-------------------- 185

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC ++++  P I  + T+ +             A Y   S +H+    
Sbjct: 186 -----------AFC-EEYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|229056233|ref|ZP_04195655.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH603]
 gi|229165394|ref|ZP_04293179.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH621]
 gi|228618078|gb|EEK75118.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH621]
 gi|228721106|gb|EEL72643.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH603]
          Length = 476

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 162/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   +G   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+       +  L I +                       
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQ-------IETLNILNLYA-------------------- 185

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC ++++  P I  + T+ +             A Y   S +H+    
Sbjct: 186 -----------AFC-EEYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPLQVVIVPIAQHKEGVLEKATELQGRIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E ++++++
Sbjct: 331 GWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQL 376


>gi|194246926|emb|CAQ76827.1| prolyl-tRNA synthetase [Campylobacter concisus]
          Length = 105

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 48/70 (68%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          M+ SK++ P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG+   D ++ +++EE
Sbjct: 1  MKFSKFYAPTTKEAPKDASLPSHQFLIRGGFVEQIGSGLYNYLPLGKIMHDKISRVVKEE 60

Query: 61 QNRTGAIEMS 70
           +  GA+E+S
Sbjct: 61 MDEAGALEVS 70


>gi|329768866|ref|ZP_08260294.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328837229|gb|EGF86866.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 647

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 164/387 (42%), Gaps = 38/387 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + S DL++ SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRRTIERYIVDKEVELGYDHVYTPIMGSKDLYITSGHWDHYQEDMFPPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + + M+  P +      ++++   SYR LP    ++ +  R E      G+ R R   
Sbjct: 322 EMDHETMVLRPMNCPHHMMVYKNERHSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           + DA+ F + P+  K  + K+ V  ++  +  LG+K+   R         LS+      D
Sbjct: 382 LNDAHVF-VRPDQLKDEF-KLTVGLIQEAYKDLGIKNFSYR---------LSYR-----D 425

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M         +  D + L+ +  E   A Y    DV  E         
Sbjct: 426 PENTEKYFDDDNMWNNAQQMLKETADELGLDYVEAEGEAAFYGPKLDVQVETAI-----G 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           K+ +   I++   F    ++ L     + G DGK H   +   GI +   R+VA ++E  
Sbjct: 481 KQETLSTIQLD--FLLPERFEL----EYIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEY 534

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG + P  +AP ++ +I +  ++    D  ++I   L K G  V  DD  E++G + 
Sbjct: 535 ---KGDL-PTWLAPNQVRIIPV--NNDYHYDYSKEIMQELKKAGVKVTIDDRDEKLGYKI 588

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
             A     P  +++G K V +  V ++
Sbjct: 589 REAANKKIPYTLVIGDKEVENKAVNVR 615


>gi|328912917|gb|AEB64513.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 653

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 164/406 (40%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S DL+  SG ++ Y   M   
Sbjct: 274 QGLPLWLPKGATIRRVIERYIVDKELSLGYEHVYTPVLGSKDLYETSGHWEHYQDGMFPP 333

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 334 MEMDNETLVLRPMNCPHHMMIYKQDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 393

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 394 TLNDAHIF-VRPDQIKEEFIRTVRLIQDVYEDFGLSDYTFR---------LSYR-----D 438

Query: 216 TGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S      D+I       E   A Y    DV   ++  ++ + 
Sbjct: 439 PEDTEKYFDDDDMWNKAQSMLKAAMDEIGHDYYEAEGEAAFYGPKLDV---QVKTAIGKE 495

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 496 ETLSTVQLD----FLLPERFDL----TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIE-E 546

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL + G  V  D   E+IG + 
Sbjct: 547 HKGALPTW---LAPVQFQVIPVSP--SVHLDYAKKVQERLQREGLRVELDSRDEKIGYKI 601

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E +SL++ +  A
Sbjct: 602 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQKSETVSLDDFVKKA 647


>gi|282881336|ref|ZP_06290016.1| proline--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281304812|gb|EFA96892.1| proline--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 493

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 98/197 (49%), Gaps = 10/197 (5%)

Query: 250 EQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           EQW A P         E+   +L     E      + ++ G   + G  ++     T+  
Sbjct: 202 EQWMAVPVVQGVKSETERFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQV--C 361
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I K  +Q+   
Sbjct: 262 KENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPIQVVIVPISKTSEQLKAI 320

Query: 362 RDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            D  + I   L  +G  V +DD   ++ G +FA  +L G P+++++G + + ++ +E+  
Sbjct: 321 HDQLKPIIDGLRAMGITVKFDDNDTKRPGFKFADYELKGVPVRLVMGGRDLENNTIEVMR 380

Query: 421 RLTGIREDMSLEEVINY 437
           R T  +E +SLE+++ Y
Sbjct: 381 RDTLQKETVSLEKILEY 397



 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ IKS+R+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIKSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    KM   Y
Sbjct: 173 WQEGHTAHATREEAEAEAQKMLKVY 197


>gi|255532798|ref|YP_003093170.1| prolyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255345782|gb|ACU05108.1| prolyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 490

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 250 EQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           EQW A P        NE+   +L     E      + ++ G   + G  ++      F  
Sbjct: 198 EQWMAVPVVKGVKTPNERFAGALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTN 257

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +GK  +V   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  H++  ++ 
Sbjct: 258 KEGKIEHVWASSWGV-STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPIYKHEEELKNI 316

Query: 365 ---CEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               +++ A+L ++G  V +DD   Q  G +FA  +L G P+++ +G + + +  VE+  
Sbjct: 317 TGFVDELIAKLKRMGISVKYDDRDTQRPGFKFAEYELKGVPVRLAIGGRDMENGTVELAR 376

Query: 421 RLT 423
           R T
Sbjct: 377 RDT 379



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           + D  G  ++    + ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R
Sbjct: 98  KNDGNGNIIVDETAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPILVNQWANVVRWEMR 157

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            R   +R+ EFL ++ ++   T + +     KM   Y
Sbjct: 158 TRL-FLRTTEFLWQEGHTAHATADEAVEETRKMLDVY 193


>gi|254481727|ref|ZP_05094970.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214037856|gb|EEB78520.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 640

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 152/420 (36%), Gaps = 74/420 (17%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      +   +RE Q +    E+  P L    LW +SG  D +G +
Sbjct: 256 QEEAPGMVFWHPAGWSIYQTIEQYMREGQQQHDYQEIKTPQLVDLSLWKKSGHADKFGDD 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L    D+     P +      +F   +KSYR+LP    +     R+E      G+MR
Sbjct: 316 MFMLK-AEDREFAVKPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMR 374

Query: 152 SREFLMKDAYSF----DLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDL 206
            R F+  DA+ F     + PE S       F+ +L  ++   G   +  R  + P     
Sbjct: 375 VRGFVQDDAHIFCTEEQIQPEVSS------FIDFLHSVYEDFGFADVIYRLSTRP----- 423

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E +V   +D                         W     A +D  N +
Sbjct: 424 -----------EQRVGSDQD-------------------------WDRAEKALADALNAQ 447

Query: 267 --LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQ 313
              +++LP         IE      +G ++  GT    +S+P  + A +   DG      
Sbjct: 448 DLPWETLPGEGAFYGPKIEFSLKDCIGRVWQLGTIQVDFSMPGRLDAQYVAEDGSRQVPV 507

Query: 314 MGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           M    I G+      ++   ++G   I+P  +AP +  ++NI        +  + +   L
Sbjct: 508 MLHRAILGSFERFIGILIEHYEG---IFPTWLAPTQAVVLNITDKQS---EYAKSVEDSL 561

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V  D   E+IG +     +   P  ++VG K V    + ++ R       M LE
Sbjct: 562 KNKGFRVISDLRNEKIGFKIREHTIQKVPYLLVVGDKEVESQTLAVRARRGEDLGSMDLE 621


>gi|145534943|ref|XP_001453210.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420921|emb|CAK85813.1| unnamed protein product [Paramecium tetraurelia]
          Length = 609

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 169/410 (41%), Gaps = 70/410 (17%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           +LP G K  + +  +IR+E    G  E+  P L   DLW +SG  D Y + +      +D
Sbjct: 248 FLPHGTKIYNKLVEMIRKEYRERGYQEVITPQLFHKDLWKQSGHLDKYAENIYMT---HD 304

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
             M   P +      ++++   SY+ LP  F    +  R+E+     G+ R R+F   DA
Sbjct: 305 HQMGLKPMNCPGHCLLYKTLQHSYKELPIRFADFGVLHRNEVHGTLTGLTRVRKFTQDDA 364

Query: 161 YSFDLTPEGSKHSYNKM-FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
           + F    +  +   N + F+S  +++ R G    + +        GDL      + D  E
Sbjct: 365 HIFCTIEQIQQEIKNTLDFLS--KVYGRFGFTWELTLSTRPDKYIGDLQ-----IWDEAE 417

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV----HNEK-------- 266
            Q+  +    D P      D               A Y    DV    HN+K        
Sbjct: 418 RQLRIA--LSDTPYTENPGD--------------GAFYGPKIDVLIRDHNQKQHQCGTIQ 461

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           L  +LPE   ++          +   K+S P              V +    +G++  + 
Sbjct: 462 LDFNLPERFDLTYH--------HENDKFSRP--------------VMIHRAILGSIERMM 499

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++   ++G+   WP  ++P ++ +I +    +V +   ++IY +L K+G +V  +D  +
Sbjct: 500 AILTEQYNGR---WPFWLSPRQVLIIPV---SEVSKQYAKEIYDQLYKLGFEVELEDSEQ 553

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-EDMSLEEVI 435
            +G +    ++L F   + +G+K    + V+++ R    + + M L+E I
Sbjct: 554 TLGKRIRKGEMLHFNYILTLGAKEQESNTVDVRERGDNHKHQSMKLDEFI 603


>gi|256822932|ref|YP_003146895.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796471|gb|ACV27127.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 639

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 153/395 (38%), Gaps = 44/395 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W   G      +   IRE        E+  P +    LW +SG +D +G 
Sbjct: 255 IQEEAPGMIFWHDKGWTIYKTLEQYIRERLKEHDYQEVKTPQMVDRSLWEKSGHWDKFGD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +M  L +D  D A+   P +      IF   +KSYR+LP    +     R+E      G+
Sbjct: 315 DMFTLKSDERDYAI--KPMNCPCHVQIFNVGLKSYRDLPLRMAEFGSCHRNEPSGALHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F+  DA+ F  T +  +   +K       ++   G   + ++  + P        
Sbjct: 373 MRLRNFVQDDAHIF-CTEDQIQEEVSKFIAMLYDVYADFGFTDVIVKLSTRP-------- 423

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                   E +V   +++             D +  NSI  ++     A    +  KL  
Sbjct: 424 --------EQRVGTDQEW-----DKAEAALADALKANSIQFEYQPGEGA---FYGPKLEF 467

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVA 326
           +L   K    R  + G I      +S+P  + A +    G ++  V +    +G++    
Sbjct: 468 TL---KDCLERHWQCGTI---QVDFSMPGRLDAEYVAESGERETPVMLHRAILGSLERFI 521

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++     GK   W   +AP +  ++NI        D C+K+   L   G  V  D   E
Sbjct: 522 GILIEEFAGKFPAW---LAPTQAVVMNITDKQA---DFCQKVVESLKNKGFRVNSDLRNE 575

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +IG +     L   P  ++VG + V ++ V ++ R
Sbjct: 576 KIGFKIREQTLARVPFLLVVGDREVENNHVAVRTR 610


>gi|294501489|ref|YP_003565189.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351426|gb|ADE71755.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 645

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 163/387 (42%), Gaps = 36/387 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG ++ Y  +M   
Sbjct: 266 QGLPLWLPKGATIRRIIERYIVDKEVSLGYQHVYTPVLGSVELYKTSGHWEHYQDDMFPA 325

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      +++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 326 MEMDNEDLVLRPMNCPHHMMVYKQGIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 385

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++      ++   G ++   R         LS+      D
Sbjct: 386 TLNDAHIF-VRPDQIKEEFIRVVRLVEAVYKDFGFENYSFR---------LSYR-----D 430

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   D  D + L+    E   A Y    DV   ++  +L + 
Sbjct: 431 PADTEKYFDDDAMWEKAQSMLKDAMDELDLDYYEAEGEAAFYGPKLDV---QVKTALGKE 487

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 488 ETLSTVQLD----FLLPERFDL----TYIGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY 539

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +     V  +  +++  +L   G  V  D   E+IG + 
Sbjct: 540 ---KG-AFPTWLAPVQVQVIPVSP--TVHLEYAKEVQEQLQLAGIRVELDSRDEKIGYKI 593

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
             A +   P  ++VG K V D  V ++
Sbjct: 594 REAQMQKIPYMLVVGDKEVEDKAVNVR 620


>gi|161507864|ref|YP_001577828.1| theronyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048343|sp|A8YWE1|SYT_LACH4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160348853|gb|ABX27527.1| Theronyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 644

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 163/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRAVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      IF+ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQTEFAKILKLIMEVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPDRFGL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      EK+ A L+K G  V  DD  E++G +
Sbjct: 534 KGAFPTW---LAPVQAEIIPVNNEAHGEY----AEKVRAELAKRGFRVEVDDRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + +   KV ++   T      SL++ IN
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTDEEISKSLDDFIN 631


>gi|308174589|ref|YP_003921294.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607453|emb|CBI43824.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328554512|gb|AEB25004.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 643

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 164/406 (40%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S DL+  SG ++ Y   M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKELSLGYEHVYTPVLGSKDLYETSGHWEHYQDGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMIYKQDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKEEFIRTVRLIQDVYEDFGLSDYTFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S      D+I       E   A Y    DV   ++  ++ + 
Sbjct: 429 PEDTEKYFDDDDMWNKAQSMLKAAMDEIGHDYYEAEGEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIE-E 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL + G  V  D   E+IG + 
Sbjct: 537 HKGALPTW---LAPVQFQVIPVSP--SVHLDYAKKVQERLQREGLRVELDSRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E +SL++ +  A
Sbjct: 592 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQKSETVSLDDFVKKA 637


>gi|325569916|ref|ZP_08145910.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325157039|gb|EGC69207.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 646

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 170/416 (40%), Gaps = 48/416 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + + DL+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMANVDLYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D ++F + P+  K  + +     + ++    +     R +   P   D   +   + 
Sbjct: 382 TLNDGHTF-VRPDQIKEEFKRTLDLMVGVYEDFNITDYRFRLSYRDPQNKDKYFDDDAMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  +T +  + D ++      + +               A Y    DV   ++  +L   
Sbjct: 441 ENAQTMLKAAMDELELDYFEADGE--------------AAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++++  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENNHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + S+I  +++AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQASIIPVSVEAHS----DYAYEIKERLQAQGLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIRE-----DMSLEEVINYA 438
           +   +     P Q++VG + V+D+ V I+    + T + E     D    EV NY+
Sbjct: 589 KIRASQTQKIPYQIVVGDQEVNDATVNIRRYGSKETQVEELNLFVDAMAAEVKNYS 644


>gi|116872988|ref|YP_849769.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458497|sp|A0AJ08|SYT_LISW6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116741866|emb|CAK20990.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 640

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 94/436 (21%), Positives = 183/436 (41%), Gaps = 38/436 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R         LS+      D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFR---------LSYR-----DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + ++    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 452 MGMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ LI + A   
Sbjct: 501 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMELIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G     DD  E++G +   A     P  +++G + +    V ++
Sbjct: 557 L--DYSKGVQDKLQRAGLRSEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMEAGSVNVR 614

Query: 420 HRLTGIREDMSLEEVI 435
              +   E M L+  I
Sbjct: 615 RYGSKDSETMDLDAFI 630


>gi|159903594|ref|YP_001550938.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|238687108|sp|A9BAX2|SYT_PROM4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|159888770|gb|ABX08984.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 638

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 151/419 (36%), Gaps = 66/419 (15%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      +   IR+  N     E+  P      LW +SG +D +  +
Sbjct: 256 QEEAPGMVFWHPNGWSIYQVLEKYIRDVLNNNYYQEVKTPQAVDRSLWEKSGHWDKFKDD 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 316 MFTTTSENREYAI-KPMNCPCHIQIFNQGLKSYRDLPIRLAEFGSCHRNEPSGALHGLMR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            R F+  DA+ F    E    S    F+  +  ++   G   I ++  + P    +  EF
Sbjct: 375 VRNFVQDDAHIF--CTEAQVQSEVSNFIDLVFEVYKSFGFNEIIIKLSTRP-KKRVGSEF 431

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD- 269
           I                                        W     A S+  N K  D 
Sbjct: 432 I----------------------------------------WDKSEKALSEALNSKGLDW 451

Query: 270 -SLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGS 316
             LP         IE      +  ++  GT    +S+P  + A +    G K   V +  
Sbjct: 452 SYLPGEGAFYGPKIEFSLKDCLNRVWQCGTIQVDFSMPSRLEAKYIDEKGEKKEPVMLHR 511

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G+      ++  ++ G   +W   +AP +I ++ I   +  C   CE +  +L   G
Sbjct: 512 AILGSFERFIGILIENYAGNFPVW---LAPVQIIVMGITDRNSSC---CESLTTKLINKG 565

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V  D   E+IG +     L   P  +I+G K   + K+ ++ R       +SLEE +
Sbjct: 566 YRVKLDLRNEKIGFKIREHTLNRIPYLLIIGDKEEKEGKIAVRTREGNDMGSISLEEFL 624


>gi|332523222|ref|ZP_08399474.1| threonine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314486|gb|EGJ27471.1| threonine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 648

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 156/387 (40%), Gaps = 35/387 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++  +G   +  P + S D +  SG +D Y  +M   
Sbjct: 261 QGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPMASVDFYKTSGHWDHYRDDMFPT 320

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +     ++++ H+ SYR LP    ++ +  R E      G+ R RE
Sbjct: 321 MDMGDGEEFVLRPMNCPHHIEVYKHHVHSYRELPIRIAELGMMHRYEKSGALSGLQRVRE 380

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D + F +TPE  +  + +     + ++    L     R         LS+      
Sbjct: 381 MTLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR---------LSYR----- 425

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPE 273
           D  +T+ +   D M     S      D + ++    E   A Y    D+   ++  +L  
Sbjct: 426 DPNDTEKYFDNDEMWEKAQSMLKAALDEMGVDYFEAEGEAAFYGPKLDI---QVKTALGN 482

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESS 332
            + +S   ++    F    ++ L     + GADG++H   M   G I  M    A++  +
Sbjct: 483 EETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMIHRGVISTMERFTAILIET 534

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + G    W   +AP ++++I I     V  D   ++   L   G     D+  E++  + 
Sbjct: 535 YKGAFPTW---LAPHQVTVIPISNEAHV--DYAWEVAKILRDKGVRADVDERNEKMQYKI 589

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +     P Q+IVG K + +  V ++
Sbjct: 590 RASQTSKIPYQLIVGDKEMEEKSVNVR 616


>gi|154492734|ref|ZP_02032360.1| hypothetical protein PARMER_02371 [Parabacteroides merdae ATCC
           43184]
 gi|154087039|gb|EDN86084.1| hypothetical protein PARMER_02371 [Parabacteroides merdae ATCC
           43184]
          Length = 493

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 147/348 (42%), Gaps = 65/348 (18%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +R+ I+SYR+LP    Q     R E       MR+R   
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYRNWIQSYRDLPILCNQWANVMRWE-------MRTR--- 163

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                               +F+       + G  +   R E+      +     V AD 
Sbjct: 164 --------------------LFLRTAEFLWQEGHTAHATREEAEIEAKKMQG---VYADF 200

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E       ++M  P+         I  + S  E+    +A   D +     +++ ++  
Sbjct: 201 AE-------NYMAMPV---------IKGVKSASER----FAGALDTYT---IEAMMQD-- 235

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  +      TF   +GK  Y    S+G+ + R++ A+I S  D  
Sbjct: 236 --GKALQAGTSHFLGQNFGKAFDVTFIDKNGKSDYAWATSWGV-STRLIGALIMSHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ +I I   ++      EK   I A+L  +G  V +D+   ++ G +F
Sbjct: 293 GLVLPPHLAPIQVVIIPIYRSEEQLAQISEKVNGIVAKLKALGISVKFDNADNKKPGWKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           A  +L G P+++ +G + + ++ +E+  R T  +E ++ + +  Y  +
Sbjct: 353 AEYELKGVPVRLAMGGRDLENNTIEVMRRDTLEKETVTCDNIETYVQN 400


>gi|291548182|emb|CBL21290.1| prolyl-tRNA synthetase, family I [Ruminococcus sp. SR1/5]
          Length = 479

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 150/407 (36%), Gaps = 70/407 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  +  P G    +N+   +      TG   + +P      L   E    + +  E+  
Sbjct: 38  KGCMAIKPAGYAIWENIQHELDRRFKETGVENVYMPIFIPESLLDKEKDHVEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     D   + +   PT E +  D ++  I+S+R+LP  + Q    +++    RP    
Sbjct: 98  VTHGGLDPLQERLCVRPTSETLFCDFYQKEIQSHRDLPKVYNQWCSVVRWEKTTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +RSREFL ++ ++   T E ++    +M   Y                            
Sbjct: 155 LRSREFLWQEGHTAHATAEEAEQRTIQMLNIY---------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               AD      FC +      I  + TD +             A Y   S +H+ K   
Sbjct: 187 ----AD------FCEEVLAIPVIKGQKTDKEKFAGAE-------ATYTIESLMHDGKALQ 229

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S              G    FG  ++      +   D    YV   S+G+   R++ A+I
Sbjct: 230 S--------------GTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGM-TTRMIGAII 274

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               D  G++ P  +AP +  +I I+   +   +  +++ A L   G     D   +  G
Sbjct: 275 MVHGDNSGLVLPPRIAPVQTVIIPIQQRKEGVMEKADELLAALKAAGIRAKVDATDKSPG 334

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +FA  ++ G PL+V  G K + + +  +  R T  +  +S EE+ +
Sbjct: 335 FKFAEQEMRGIPLRVECGPKDIENGQAVLCRRDTREKYTVSFEELAD 381


>gi|225868159|ref|YP_002744107.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259516675|sp|C0MCN7|SYT_STRS7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225701435|emb|CAW98547.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 648

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 162/399 (40%), Gaps = 46/399 (11%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P L S +L+  SG ++ Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPLASVELYKTSGHWEHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F + PE  +  + +     + ++    L     R         LS
Sbjct: 374 GLQRVREMTLNDGHLF-VMPEQIQEEFQRALQLIIDVYEDFNLTDYRFR---------LS 423

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
           +      D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 424 YR-----DPKDTHKYYDNDEM-----WENAQSMLKAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L   + +S   ++    F    +++L    ++ GADG++H   M   G I 
Sbjct: 474 I---QVKTALGNEETLSTIQLD----FLLPERFNL----SYIGADGEEHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP ++++I I     +  D   ++   L   G    
Sbjct: 523 TMERFTAILIETYKGAFPTW---LAPRQVTVIPISNEAHI--DYAWEVAKTLRDHGIRAD 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 578 VDDRNEKMQYKIRASQTSKIPYQLIVGDKEMQDKSVNVR 616


>gi|24379968|ref|NP_721923.1| threonyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|73919830|sp|Q8DT12|SYT_STRMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24377953|gb|AAN59229.1|AE014990_3 putative threonyl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 649

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 163/395 (41%), Gaps = 38/395 (9%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P + S DL+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPDGATIRRIIERYITDKEVASGYQHVYTPPIASVDLYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D ++ +  P +     +++++H+ SYR LP    ++ +  R E      
Sbjct: 314 REDMFPTMDMGDGESFVLRPMNCPHHIEVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F +  +  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMTLNDGHTF-VALDQVEDEFKRTLQLIIDVYEDFNLTDYSFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              +   D  +T  +   D M +          DD+       E   A Y    D+   +
Sbjct: 422 ---LSYRDPNDTHKYFDDDEMWEKSQTMLKAAMDDMGLDYYEAEGEAAFYGPKLDI---Q 475

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RV 324
           +  +L  ++ +S   ++    F    ++ L    T+ GADG++H   M   GI +   R 
Sbjct: 476 VKTALGNDETLSTIQLD----FLLPERFEL----TYIGADGEEHRPVMIHRGIVSTMERF 527

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            A +IE+    KG  +P  +AP ++++I I     +  D   ++   L   G     DD 
Sbjct: 528 TAYLIETY---KG-AFPTWLAPHQVTVIPISNEAHI--DYAWEVAKELRDHGIRADVDDR 581

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            E++  +   +     P Q+IVG K V +  V ++
Sbjct: 582 NEKMQYKIRQSQTKKVPYQLIVGDKEVENGTVNVR 616


>gi|332686097|ref|YP_004455871.1| threonyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332370106|dbj|BAK21062.1| threonyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 647

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 175/423 (41%), Gaps = 43/423 (10%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q    G+  WLP G      +   I +++   G   +  P + + DL+  SG +  Y
Sbjct: 255 MISQEVGSGLPFWLPKGATIRRTIERYITDKEISLGYQHVYTPIMANVDLYKTSGHWAHY 314

Query: 90  GKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D  M +  P +      +++  + SYR LP    ++ +  R E      
Sbjct: 315 HEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKDTVHSYRELPIRIAELGMMHRYEKSGALS 374

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDL 206
           G+ R RE  + D ++F + P+  K  + ++    L ++    +     R +   P   D 
Sbjct: 375 GLQRVREMTLNDGHTF-VRPDQIKEEFKRILELMLAVYKDFNITDYKFRLSYRDPNNKDK 433

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +   +    +T +  + D +         D+ +        E   A Y    DV   +
Sbjct: 434 YFDDDAMWTKAQTMLKGAMDELKL-------DYFE-------AEGEAAFYGPKLDV---Q 476

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAM-R 323
           +  +L   + +S   ++    F    ++ L    T+ G DG++++  V +    +  M R
Sbjct: 477 VKTALGMEETLSTIQLD----FLLPERFDL----TYIGEDGENNHRPVVIHRGIVSTMER 528

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            V+ +IE  + G   +W   +AP + ++I  ++ AH     +  E++  R    G  +  
Sbjct: 529 FVSYLIE-VYKGAFPLW---LAPIQATIIPVSVDAHSDYAYETKERLQMR----GLRIEV 580

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E++G +   +     P Q++VG K V DS V I+H  +   E M+L   I+     
Sbjct: 581 DDRNEKMGYKIRASQTQKIPYQIVVGDKEVDDSTVTIRHYGSKETEVMALNLFIDSLIAE 640

Query: 442 FSN 444
            SN
Sbjct: 641 ISN 643


>gi|297544949|ref|YP_003677251.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842724|gb|ADH61240.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 634

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 160/413 (38%), Gaps = 51/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHGYQEIKTPIILNEELWRRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTEIDGETYAIKPMNCPGAMLVYKSTMHSYRDLPLRLCELGLVHRHELSGVLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TPE  +     +   V Y  +IF       +  R E+  +G D  
Sbjct: 373 RVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYFYKIFGFEYFVELSTRPENS-MGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A      +  + + ++ P      D               A Y    D H   L
Sbjct: 431 WELATNA------LISALNRVNLPYKVNEGD--------------GAFYGPKIDFH---L 467

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G DG+ H  + +     G++ 
Sbjct: 468 KDSI-------GRTWQCGTIQLDFQMPERFEL----EYIGPDGEKHRPIMLHRVIYGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP ++ ++ I           + +Y RL +       DD
Sbjct: 517 RFIGILTEHFAGA---FPTWLAPVQVRVLPISDKHYAY---AQNVYGRLLENDIRAELDD 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E++G +   A L   P  +IVG K V    V ++ R  G    +SL E I 
Sbjct: 571 RNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRREGDLGAISLSEFIE 623


>gi|58584729|ref|YP_198302.1| threonyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|73919844|sp|Q5GSG4|SYT_WOLTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58419045|gb|AAW71060.1| Threonyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 632

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 4/172 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W   G    + + + IR++    G  E+  P L S +LW +SG +D + +
Sbjct: 253 IQEEAVGQVFWHEQGYTLYNVLESYIRKKLINNGYAEVKTPILVSKELWEKSGHWDKFRE 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + +   K +   P +      IF S+ +SYRNLP    +  +  R+E      G+M
Sbjct: 313 NMFIVDESESKKLAIKPMNCPCHVQIFNSYTRSYRNLPIRMAEFGMCHRNESSGSLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP 201
           R R F   DA+ F +  E   +S    F + L+ ++  LG   I ++    P
Sbjct: 373 RVRGFTQDDAHIFCM--EEQVNSETVKFCALLKEVYSELGFNEISVKFSDRP 422


>gi|326391979|ref|ZP_08213481.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325991980|gb|EGD50470.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 634

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 160/412 (38%), Gaps = 51/412 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHGYQEIKTPIILNEELWRRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTEIDGETYAIKPMNCPGAMLVYKSTMHSYRDLPLRLCELGLVHRHELSGVLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TPE  +     +   V Y  +IF       +  R E+  +G D  
Sbjct: 373 RVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYFYKIFGFEYFVELSTRPENS-MGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A      +  + + ++ P      D               A Y    D H   L
Sbjct: 431 WELATNA------LISALNRVNLPYKVNEGD--------------GAFYGPKIDFH---L 467

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G DG+ H  + +     G++ 
Sbjct: 468 KDSI-------GRTWQCGTIQLDFQMPERFEL----EYIGPDGEKHRPIMLHRVIYGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP ++ ++ I           + +Y RL +       DD
Sbjct: 517 RFIGILTEHFAGA---FPTWLAPVQVRVLPISDKHYAY---AQNVYGRLLENDIRAELDD 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E+IG +   A L   P  +IVG K V    V ++ R  G    +SL E I
Sbjct: 571 RNEKIGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKEGDLGAISLNEFI 622


>gi|21674311|ref|NP_662376.1| prolyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|81860050|sp|Q8KCD1|SYP_CHLTE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21647484|gb|AAM72718.1| prolyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 481

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 134/340 (39%), Gaps = 63/340 (18%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TP
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATP 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++    +M    + I+     + + M               +++    E++ F   D 
Sbjct: 167 EEAQEEVIRM----INIYRTFAEEYMAMP--------------VIVGKKSESEKFAGAD- 207

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                                     A Y   + + +               + ++ G  
Sbjct: 208 --------------------------ATYCIEAMMQD--------------GKALQAGTS 227

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G  ++      F+  DG   YV   S+G+ + R++ A+I +  D KG++ P  +A  
Sbjct: 228 HNLGQNFAKAFDCQFQTKDGVLDYVWATSWGV-STRLIGALIMAHSDDKGLVLPPKLASR 286

Query: 348 KISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVI 405
           ++ +I I K +    R     I   L++ G   F DD      G +FA  +L G P+++ 
Sbjct: 287 QVVIIPILKGNKDEVRARARFIAKTLNRHGIPTFVDDSENNSPGWKFAEYELQGIPVRIE 346

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +G + +   K  +  R T  + ++ L++ +        NN
Sbjct: 347 LGPRDLEQGKCIVARRDTFEKTELLLDDELTINIEEILNN 386


>gi|325279815|ref|YP_004252357.1| Prolyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324311624|gb|ADY32177.1| Prolyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 491

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F  A+GK  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 233 GKALQAGTSHFLGQNFAKAFDVQFTNAEGKLEYVWATSWGV-STRLMGALIMAHSDDNGL 291

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMGEQI-GSQFAV 394
           + P  +AP ++ ++ I    +  +   +K+   + K+   G  V +DD   Q  G +FA 
Sbjct: 292 VLPPKLAPLQVVIVPIYKGAEGLKKISDKVQGLIEKLRAKGISVKYDDRDTQKPGWKFAD 351

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++ +G + + +  +E+  R T  +E + LE ++ +
Sbjct: 352 YELKGVPVRLAMGERDLENGTIEVARRDTLTKETLPLEGIVGH 394



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++  I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 111 AAKLEEEYIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVMRWEMRTRM-FLRTAEFL 169

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E +    NKM   Y
Sbjct: 170 WQEGHTAHATKEEALEEANKMVRVY 194


>gi|78044971|ref|YP_360408.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770579|sp|Q3ABS6|SYT_CARHZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77997086|gb|ABB15985.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 634

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 151/398 (37%), Gaps = 45/398 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +   G   + P G    + +    RE+    G  E+  P + + +LW  SG +  Y K
Sbjct: 255 LQEEGPGFPFFHPKGMVIRNELENFWREKHRLAGYQEIKTPIILNRELWERSGHWAHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D+     P +      ++++ + SYR  P    ++ L  R EL     G+M
Sbjct: 314 ENMYFTKIDDQDYAIKPMNCPGSILVYKNKLHSYREFPIRLAELGLVHRHELSGVLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F + PE  K     + ++ +  F+RL                    E+
Sbjct: 374 RVRCFTQDDAHIF-MLPEQVKDEIIGV-INLIDEFYRL-----------------FGFEY 414

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V   T       S +  +    S     ++      I E   A Y    D H   L D 
Sbjct: 415 HVELSTRPENSMGSDELWELATNSLKEALEERGLPYKINEGDGAFYGPKIDFH---LKDC 471

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
           L        R  + G I   F    K+ L    T+ G DG+ H  V +     G++    
Sbjct: 472 L-------GRTWQCGTIQLDFQMPEKFDL----TYIGEDGQKHRPVMIHRVVFGSIERFI 520

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + G   +W   ++P ++ +I +       R+  ++IY +L   G  V  DD  E
Sbjct: 521 GILIEHYAGAFPVW---LSPVQVRVITVAERH---REYGQEIYQKLFNQGVRVELDDRNE 574

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            IG +     +   P  +IVG K +    V ++ R  G
Sbjct: 575 TIGYKIREGQMQKIPYLLIVGDKEIEQGSVAVRKRGVG 612


>gi|328464763|gb|EGF36081.1| threonyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 644

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 163/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      IF+ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VVLDQVQTEFAKILKLIMEVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPDRFGL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      EK+ A L+K G  V  DD  E++G +
Sbjct: 534 KGAFPTW---LAPVQAEIIPVNNEAHGEY----AEKVRAELAKRGFRVEVDDRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + +   KV ++   T      SL++ IN
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTDEEISKSLDDFIN 631


>gi|193203271|ref|NP_001122525.1| Prolyl tRNA Synthetase family member (prs-2) [Caenorhabditis
           elegans]
 gi|148472914|emb|CAN86903.1| C. elegans protein T27F6.5d, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 138

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 52/83 (62%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +H +++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++++P + +  LW 
Sbjct: 22  AHTMLVENGFILPTAKGFYSLLPLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWE 81

Query: 82  ESGRYDSYGKEMLRLADRNDKAM 104
           ++GR+++ G EM+R  DR    M
Sbjct: 82  KTGRWEAMGPEMIRFHDRQQNHM 104


>gi|323339586|ref|ZP_08079860.1| threonine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323092981|gb|EFZ35579.1| threonine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 685

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 164/417 (39%), Gaps = 42/417 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+ +SG +D Y ++M    
Sbjct: 300 GLPYWMPNGATIRRTIERYIIDKEVSWGYEHVYTPILANVDLYKQSGHWDHYREDMFPPM 359

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  ++   P +      I+  HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 360 DMGDGELLELRPMNCPSHIQIYNRHIRSYRDLPLRIAELGMMHRYEKSGALTGLSRVREM 419

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +TP+  +  + +     + ++H   +     R         LS+      D
Sbjct: 420 TLNDGHTF-VTPDQIEAEFKRTLQLMVEVYHDFNINDYRFR---------LSYR-----D 464

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M +          DD+       E   A Y    DV  +    +L   
Sbjct: 465 PKNTHKYYDDDEMWEKSQRMLKAAMDDLGLEYFEAEGEAAFYGPKLDVQTKT---ALGGE 521

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + GADG++H   M   GI   M    A +   +
Sbjct: 522 ETLSTIQLD----FLLPERFDL----KYVGADGEEHRPVMIHRGIVSTMERFTAYLTEMY 573

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N+  H    R     + AR  +V      DD  E++G +
Sbjct: 574 KGAFPTW---LAPKQVEVIPVNLDLHTDYARKLASALAARQIRVSV----DDRNEKMGYK 626

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE---VINYASHRFSNN 445
              A +   P  ++VG        V ++       E M+ ++   ++++    +S N
Sbjct: 627 IRQAQVNKVPYTLVVGDNEKEQGTVTVRRYGQEKTETMAFDDFKKILDHDLETYSRN 683


>gi|320528406|ref|ZP_08029568.1| threonyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131320|gb|EFW23888.1| threonyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 591

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 163/412 (39%), Gaps = 56/412 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      ++  I  ++   G   +  P++ S  L+  SG    Y  +M  + 
Sbjct: 203 GLPLWLPNGLTVRRLLSDYIMNKELARGYQHVLTPSVASTKLYKISGHLAHYKDDMFPIM 262

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
            R+D   +  P +      I++S + SYR+LP    +I   FR E      G+ RSR F 
Sbjct: 263 SRDDDEFVLRPMNCPEHMIIYKSQLHSYRDLPIRIAEIANDFRFEASGALTGIERSRAFT 322

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D++ F  T E        +    L ++    L     R              + L D 
Sbjct: 323 QNDSHIF-CTEEQIASEIKAVTELILDVYKDFNLNQFEFR--------------LSLRDK 367

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
             T+ +   D  D    SE+        L  ++++   PY    +   E  F     + +
Sbjct: 368 ENTEKYFGND--DLWERSES-------ELREVLKEMNVPY---YEAEGEAAFYGPKIDVQ 415

Query: 277 VSARGIEVGHIFYFGT---KYSLP----MSATFKGADGKD----HYVQMGSYGIGAMRVV 325
           V +    +GH     T    Y LP    +     G + K     H   +GS      R V
Sbjct: 416 VRS---ALGHDVTLSTIQLDYQLPERFELEYVANGGEKKRPVVIHRAILGSID----RFV 468

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           A ++E +   KGI+ P  +AP +  +I +  +AH +  +    K+   L K+G     DD
Sbjct: 469 AFLLEET---KGIL-PLWLAPRQAVVIPVSPEAHGEYAK----KVVEELRKIGVRTELDD 520

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E++G +   A     P++V+VG   + ++ + ++   +     MSLEE +
Sbjct: 521 RNEKLGYRIREAQTNKLPIEVVVGDGEIENNGITLRRYGSRQETKMSLEEFL 572


>gi|254785570|ref|YP_003072999.1| threonyl-tRNA synthetase [Teredinibacter turnerae T7901]
 gi|259516754|sp|C5BSQ1|SYT_TERTT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237684404|gb|ACR11668.1| threonine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 637

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 153/407 (37%), Gaps = 68/407 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G  E+  P +    LW  SG +D +  
Sbjct: 255 LQEEAPGMVFWHPKGWSVYTAIEQYMRKVQRENGYKEIKTPQVVDRSLWERSGHWDKFRD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M  + ++  D A+   P +      +F   +KSYR+LP  F +     R+E      G+
Sbjct: 315 GMFTVESESRDYAV--KPMNCPCHIQVFNQGLKSYRDLPLRFAEFGSCHRNEASGTLQGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSH 208
           MR R F   D + F    E +  S   +F   L  ++   G + + +R  + P       
Sbjct: 373 MRVRAFTQDDGHIF--CAEDAIQSEVSIFTDLLYEVYRDFGFEDVIIRLSTRP------- 423

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK-- 266
                    E +V                            E W     A +D  N K  
Sbjct: 424 ---------EQRVGSE-------------------------EVWDKSEKALADALNAKGL 449

Query: 267 LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMG 315
            F+ LP         IE      +G ++  GT    +S+P  + A F   DG      M 
Sbjct: 450 AFEYLPGEGAFYGPKIEFSLKDCIGRVWQCGTIQVDFSMPARLDAQFVAEDGSRQVPVML 509

Query: 316 SYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              I G+      ++  +++G    +P  +AP ++ ++NI  +     +  EK+   L  
Sbjct: 510 HRAILGSFERFIGILIENYEGA---FPPWLAPEQVVVMNITDNQA---EYAEKVRNSLQN 563

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G  V  D   E+IG +     +   P  ++VG + + ++ V ++ R
Sbjct: 564 EGFRVVSDLRNEKIGFKIREHTIQKVPYLLVVGDQEMENNSVAVRTR 610


>gi|167759625|ref|ZP_02431752.1| hypothetical protein CLOSCI_01983 [Clostridium scindens ATCC 35704]
 gi|167662751|gb|EDS06881.1| hypothetical protein CLOSCI_01983 [Clostridium scindens ATCC 35704]
          Length = 480

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 173/434 (39%), Gaps = 79/434 (18%)

Query: 14  NPRDAEIAS-HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            PRD + A  +  ++R   +  +S  KG  ++LP G    + + A + +    TG   + 
Sbjct: 12  TPRDEDFAQWYTDVVREAELCDYSSVKGCLNYLPNGYAIWELIQADLDKRFKETGVENVY 71

Query: 71  VPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           +PTL    L   E+   + +  E+  +     +R  + +   PT E +  D++   ++SY
Sbjct: 72  LPTLIPESLLEKEADHIEGFAPEVAWVTHGGMERLQERLCIRPTSETLFCDLWAKTVQSY 131

Query: 126 RNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           R+LP  + Q    L++    RP    +RSREFL ++ ++   T E ++    +M   Y  
Sbjct: 132 RDLPKVWNQWNTVLRWEKTTRP---FLRSREFLWQEGHTIHATYEEAEERTIQMLHVYED 188

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +      +IP  +     G    HE    A                          D  
Sbjct: 189 CYKE--TLAIPFVS-----GRKAEHEKFAGA-------------------------QDTY 216

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSA 300
           ++ +++    A  +ATS        D+                   FG KY   +  + +
Sbjct: 217 TIEALMHDGKALQSATSHFFGSGFPDA-------------------FGIKYVDKNNQLQS 257

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            ++ + G        +  IGA+ +V        D  G++ P  VAP +  +I I  H + 
Sbjct: 258 VYETSWG------WSTRSIGALIMVHG------DDSGLVLPPHVAPVECRIIPIAQHKEG 305

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L K G  V  DD  +  G +F+  ++LG P ++ +G K +  ++V +  
Sbjct: 306 VLDRSFALLDELKKAGYRVKIDDSDKSTGWKFSEQEMLGIPTRIEIGPKDIEKNQVVVVR 365

Query: 421 RLTGIREDMSLEEV 434
           R    +  +SL+E+
Sbjct: 366 RDNREKIVVSLDEI 379


>gi|226311191|ref|YP_002771085.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094139|dbj|BAH42581.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 637

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 157/408 (38%), Gaps = 39/408 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G    + +    R  Q      E+  P L +  LW ESG +D Y 
Sbjct: 257 MFSEEAPGMPFYLPKGFTVRNELEQFSRRLQQLAQYTEVRSPFLMNERLWKESGHWDHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +  ++ ++      P +      I+++ + SYR+LP  + +     R E      G+
Sbjct: 316 KENMYFSEVDNATYALKPMNCPGHMLIYKNEMHSYRDLPIRYSEFGQVHRHEYSGALNGM 375

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R R F   DA+ F + P+        M      I+   G                   E
Sbjct: 376 LRVRTFCQDDAHVF-VRPDQIASEIKGMITLIDSIYKVFGF------------------E 416

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           + V   T       S +  +    S  T  +++     I +   A Y    D    ++ D
Sbjct: 417 YSVALSTRPEDSMGSDELWEAAESSLKTVLEELGMAYEIKDGDGAFYGPKIDF---QITD 473

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
           +L    +     ++    F    K+ L    T+ G D + H  V +     G+M     +
Sbjct: 474 ALKRRHQCGTIQLD----FQMPEKFDL----TYVGQDNEKHRPVVLHRAMYGSMERFIGI 525

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   IW   + P +  ++NI    +V     E++  +L + G  V  D   E+I
Sbjct: 526 LIEHYAGAFPIW---LTPIQARIMNIS---EVHMPYAEQVREKLQQAGIRVELDGRNEKI 579

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G +   A +   P  +++G K V+D  + ++ R  G    M+++  + 
Sbjct: 580 GYKIREAQVEKIPYMLVIGEKEVADGTLSVRKRGVGDEGAMTVDAFVE 627


>gi|307266242|ref|ZP_07547784.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918772|gb|EFN49004.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 634

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 160/413 (38%), Gaps = 51/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHGYQEIKTPIILNEELWRRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTEIDGETYAIKPMNCPGAMLVYKSTMHSYRDLPLRLCELGLVHRHELSGVLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TPE  +     +   V Y  +IF       +  R E+  +G D  
Sbjct: 373 RVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYFYKIFGFEYFVELSTRPENS-MGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A      +  + + ++ P      D               A Y    D H   L
Sbjct: 431 WELATNA------LISALNRVNLPYKVNEGD--------------GAFYGPKIDFH---L 467

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G DG+ H  + +     G++ 
Sbjct: 468 KDSI-------GRTWQCGTIQLDFQMPERFEL----EYIGPDGEKHRPIMLHRVIYGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP ++ ++ I           + +Y RL +       DD
Sbjct: 517 RFIGILTEHFAGA---FPTWLAPVQVRVLPISDKHYAY---AQHVYGRLLENDIRAELDD 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E+IG +   A L   P  +IVG K V    V ++ R  G    +SL E I 
Sbjct: 571 RNEKIGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKEGDLGAISLNEFIE 623


>gi|260103159|ref|ZP_05753396.1| threonine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083018|gb|EEW67138.1| threonine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 644

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 163/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      IF+ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VVLDQVQTEFAKILKLIMEVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPDRFGL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      EK+ A L+K G  V  DD  E++G +
Sbjct: 534 KGAFPTW---LAPVQAEIIPVNNEAHGEY----AEKVRAELAKRGFRVEVDDRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + +   KV ++   T      SL++ IN
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTDEEISKSLDDFIN 631


>gi|167037181|ref|YP_001664759.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115599|ref|YP_004185758.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856015|gb|ABY94423.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928690|gb|ADV79375.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 634

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 160/413 (38%), Gaps = 51/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHGYQEIKTPIILNEELWRRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTEIDGETYAIKPMNCPGAMLVYKSTMHSYRDLPLRLCELGLVHRHELSGVLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TPE  +     +   V Y  +IF       +  R E+  +G D  
Sbjct: 373 RVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYFYKIFGFEYFVELSTRPENS-MGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A      +  + + ++ P      D               A Y    D H   L
Sbjct: 431 WELATNA------LISALNRVNLPYKVNEGD--------------GAFYGPKIDFH---L 467

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G DG+ H  + +     G++ 
Sbjct: 468 KDSI-------GRTWQCGTIQLDFQMPERFEL----EYIGPDGEKHRPIMLHRVIYGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP ++ ++ I           + +Y RL +       DD
Sbjct: 517 RFIGILTEHFAGA---FPTWLAPVQVRVLPISDKHYAY---AQNVYGRLLENDIRAELDD 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E++G +   A L   P  +IVG K V    V ++ R  G    +SL E I 
Sbjct: 571 RNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKEGDLGAISLSEFIE 623


>gi|89073900|ref|ZP_01160406.1| threonyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89050228|gb|EAR55732.1| threonyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 631

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 151/397 (38%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   IRE+ N     E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWTIFRELEVFIREKLNEYDYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   + + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTEAQVQQEVTSCIEMVY-DTYKTFGFDNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E+ +  + + M+ P                I E   A Y    +     L
Sbjct: 433 ----AMWDKAESDLITALESMEIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 472 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        +  ++I  +L K G  V  D  
Sbjct: 522 FIGILIEDYAG---FFPTWLAPQQAVVMNIT---DAQSEYVQEIVEKLKKCGIRVNADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V    V ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPFMLVCGDKEVEAGVVAVRTR 612


>gi|320335305|ref|YP_004172016.1| Prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756594|gb|ADV68351.1| Prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 488

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 154/409 (37%), Gaps = 69/409 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G    + +   + +E   TG   +  PTL        E+   + +  E+  +     +
Sbjct: 46  PYGSAIWERIQRWLDDEFKATGHESLVFPTLIPMSFITKEADHVEGFAPELFTVNKIGTE 105

Query: 103 AM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +    +  PT E ++  ++   + SYR+LPF  YQ    FR ELR +   +R+ EF   
Sbjct: 106 VLAEPYVMRPTSETIIGHMWSQWLNSYRDLPFLHYQWGSVFRAELRTK-PFLRTSEFYWH 164

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + +    T    +       ++ L ++HR                               
Sbjct: 165 EGH----TAHADEAEARAEVMAMLNLYHR------------------------------- 189

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              FC +D +  P+         +    S  E++    A  S            E     
Sbjct: 190 ---FC-RDVLALPV---------VRGEKSASERFAGAVATYS-----------IEGMMRD 225

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  +S      F+  + ++ Y    S+ I + R++ A+I +  D KG+
Sbjct: 226 GKALQSGTSHYLGQNFSRAFDVKFQTREQREEYAHTTSWAISS-RIIGALIMTHGDDKGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
           + P  +AP ++ +I +   D V +     E +   L   G  V  D   G   G ++   
Sbjct: 285 MLPPEIAPHQVVIIPVFRKDNVDQMIAEAEALAGELRAQGVRVKVDKRDGVTNGFKYNDW 344

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +L G P+++ +G + +    V +K+R    +E +   E I+  + R S 
Sbjct: 345 ELKGVPVRMELGPRDLESGVVVVKNRTGDEKETLPRHEAISGMAARLSG 393


>gi|162447220|ref|YP_001620352.1| threonyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|189083597|sp|A9NF46|SYT_ACHLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161985327|gb|ABX80976.1| threonyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 642

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 169/418 (40%), Gaps = 66/418 (15%)

Query: 18  AEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIREEQ 61
           AE+  H +ML    +  H K                G+  WLP G      +   I +++
Sbjct: 224 AELDKHLVMLEERKLRDHRKIGKDLDIFMTSQEVGSGLPFWLPKGATIRRIIERYITDKE 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRS 120
              G + +  P + + + + +SG +D Y + M    D  D  M +  P +      I++ 
Sbjct: 284 LELGYLHVYTPIMANVEFYKQSGHWDHYHENMYPPMDLGDGEMLVLRPMNCPHHMMIYKK 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I SYR LP  F ++ +  R E      G+ R RE  + DA+ F + P+  K  + ++  
Sbjct: 344 DIHSYRELPIRFAELGMMHRYEKSGALSGLQRVREMTLNDAHIF-VRPDQIKEEFMRVVH 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + ++    +     R         LS+      D    + +   D M     SE    
Sbjct: 403 LIIEVYKDFKITDYSFR---------LSYR-----DPENKEKYFDDDQMWQRAESE---- 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-----VGHIFYFGTKY 294
                L +++++   PY     +     +    + +  +A G+E     V   F    ++
Sbjct: 445 -----LKNVMDEMKLPYKEA--IGEAAFYGPKLDIQVRTAMGMEETLSTVQLDFLLPERF 497

Query: 295 SLPMSATFKGADGKDHY--VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            L    T+ G DGK+++  V +    +  M R VA +IE  + G   +W   +AP ++ L
Sbjct: 498 DL----TYVGEDGKNNHRPVVIHRGVVSTMERFVAYLIE-EYKGSFPLW---LAPVQLKL 549

Query: 352 I--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           I  N+  H    +D    ++ +L K+G  V  D   E++G +   A  L  P Q++VG
Sbjct: 550 IPVNLDLH----KDYVMNLHEQLKKLGFRVESDFRNEKLGYKIREAQTLKIPYQLVVG 603


>gi|294155892|ref|YP_003560276.1| proline--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600080|gb|ADE19576.1| proline--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 478

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y    +S P S  FK    +D YV   S+G+ + R++ A+I +  D +G+
Sbjct: 221 GRALQAGTSHYLAQNFSKPYSILFKNKKNEDEYVYQTSWGV-STRLLGAIIMTHGDNRGV 279

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P  VAP +I LI +  A     ++  ++++  L +    V  D   +Q G + A +++
Sbjct: 280 IIPPRVAPVQIDLIELFAAKSPKVKEVSDELFELLRR-KWRVRVDKSDKQPGFKAANSEI 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G PL++ +G + + +++V +  R T  +  M+ +EV
Sbjct: 339 QGVPLRIEIGPRDLENNQVTLVRRDTLEKIVMNYKEV 375



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 15/153 (9%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM----IY 106
           +N+N I +E+      + + +P    +   +E    + +  E+  +    DK +      
Sbjct: 52  ENLNKIFKEKDVENVYLPLLIP---ESLFNLERDHLEGFNPELATVTHVGDKELSEKYFI 108

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E +  D+F++ I+SY +LP  + Q     R E +     +RSREFL ++ ++    
Sbjct: 109 RPTSEVLFADLFKNSIESYNDLPIIYNQWANVVRWE-KTTNPFLRSREFLWQEGHTCHSD 167

Query: 167 P-------EGSKHSYNKMFVSYLRIFHRLGLKS 192
           P        G   +Y+K   ++L I   +G K+
Sbjct: 168 PIEARRFTRGMITTYSKFLKNFLAIPTIIGKKT 200


>gi|229171240|ref|ZP_04298831.1| Prolyl-tRNA synthetase 2 [Bacillus cereus MM3]
 gi|228612233|gb|EEK69464.1| Prolyl-tRNA synthetase 2 [Bacillus cereus MM3]
          Length = 476

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/406 (20%), Positives = 160/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+              H L L +                 
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQ----------AETLHILNLYA----------------- 185

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 186 -----------SFC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQEHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|329895719|ref|ZP_08271123.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328922195|gb|EGG29550.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 641

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/423 (20%), Positives = 157/423 (37%), Gaps = 70/423 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      +   +R  Q + G  E+  P +    LW +SG  D +G +
Sbjct: 256 QEEAPGMVFWHPKGWTVYQVIEQYMRNRQRQEGYKEIKTPQVVDMTLWHKSGHADKFGDD 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L    D+     P +      +F   +KSYR+LP    +     R+E      G+MR
Sbjct: 316 MFMLK-AEDREFAVKPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMR 374

Query: 152 SREFLMKDAYSF----DLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDL 206
            R F   DA+ F     + PE S+      F+ +L  ++   G   +  R  + P     
Sbjct: 375 VRGFTQDDAHIFCTEDQIQPEVSR------FIDFLHGVYEDFGFNEVIYRLSTRP----- 423

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E +V   +D+                      ++     A   D HN  
Sbjct: 424 -----------EKRVGSEEDW----------------------DRAEKALADALDAHNLP 450

Query: 267 LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQM 314
            ++ LP         IE      +G ++  GT    +S+P  + A +   DG +   V +
Sbjct: 451 -WELLPGEGAFYGPKIEFSLKDCIGRVWQLGTIQVDFSMPGRLDAQYVAEDGARKTPVML 509

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G+      ++    +G+   +P  +AP +++++NI        +  + +   L+ 
Sbjct: 510 HRAILGSFERFIGILIEHFEGR---FPTWLAPEQVAVMNITDKQG---EFTQNVVDYLNN 563

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G     D   E+IG +     L   P  ++VG K V    V ++ R       M+L + 
Sbjct: 564 SGFRAIADLRNEKIGFKIRERTLAKIPYLLVVGDKEVETQSVAVRTRDGKDLGTMTLADF 623

Query: 435 INY 437
             Y
Sbjct: 624 AEY 626


>gi|209966088|ref|YP_002299003.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
 gi|238065118|sp|B6IV67|SYT_RHOCS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209959554|gb|ACJ00191.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
          Length = 651

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 160/408 (39%), Gaps = 59/408 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   IR + +  G +E+  P L  + L+  SG +D YG 
Sbjct: 256 VQEEAVGSVFWHPKGWALYRTLENYIRTKLDAAGYVEVRTPQLYDSSLFKASGHWDMYGD 315

Query: 92  EMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M ++      D  +K +   P +      IFR  +KSYR+LP    +     R+E    
Sbjct: 316 NMFKIRESVAEDGTEKFLGVKPMNCPAHVQIFRQGLKSYRDLPLRMAEFGNCHRNEPSGA 375

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---I 202
             G++R R F   DA+ F  T +       + F   L ++  LG   I ++    P   +
Sbjct: 376 LHGILRVRNFTQDDAHIF-CTEDQVGQEAKEYFALQLGVYKDLGFDKIAVKLALRPDVRL 434

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           G D + +              +++ +   + + + +F+++    +        Y    + 
Sbjct: 435 GTDETWD-------------KAEESLRVALRANDLEFEELPGEGAF-------YGPKVEF 474

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSY 317
           H   L D+             +G  +  GT    + LP  + A++ G DG  H   M   
Sbjct: 475 H---LTDA-------------IGRSWQCGTLQLDFQLPERLDASYIGQDGARHRPVMLHR 518

Query: 318 GI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            I G++     ++   + GK  +W   +AP ++ +  I +         + +   L + G
Sbjct: 519 AILGSLERFIGMMIEHYAGKFPLW---LAPVQVVVATIVSEADAY---AQTVAETLRRAG 572

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             V  D   E+I  +     L   P+ ++VG++      V ++ RL G
Sbjct: 573 LRVEADVRNEKINLKVREHSLAKVPVMLVVGAREAEQGTVAVR-RLGG 619


>gi|88706032|ref|ZP_01103740.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88699746|gb|EAQ96857.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 645

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 99/452 (21%), Positives = 161/452 (35%), Gaps = 84/452 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      KL L      + + G+  W P G      +   +RE+Q   
Sbjct: 230 QYLHRIEEAEKRDHRKIGKKLDLF--HTQEEAPGMVFWHPQGWTIYQVIEQYMREQQRAN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW +SG  D +G +M  L   +++     P +      +F   ++S
Sbjct: 288 GYQEIKTPQLVDMSLWEKSGHADKFGDDMFML-QADEREFAVKPMNCPCHVQVFNQGLRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F   D + F    E    S    F+ +L 
Sbjct: 347 YRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDGHIF--CTEEQIQSEVSTFIDFLH 404

Query: 184 IFHR-LGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             +R  G   +  R  + P   +G D                                  
Sbjct: 405 AVYRDFGFDEVIYRLSTRPPKRVGSD---------------------------------- 430

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFD--SLPENKRVSARGIE------VGHIFYFG 291
                     E W     A +D  + +  D   LP         IE      +G ++  G
Sbjct: 431 ----------EDWDRAEKALADALDAQELDWQELPGEGAFYGPKIEFSLKDCIGRVWQMG 480

Query: 292 T---KYSLP--MSATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           T    +S+P  + A +   DG        H   +GS+     R +  +IE + +G   +W
Sbjct: 481 TVQVDFSMPGRLDAQYVAEDGSRKTPVMLHRAILGSF----ERFIGILIE-NFEGAFPVW 535

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP +  ++NI        +  + +   L   G  VF D   E+IG +     +   
Sbjct: 536 ---LAPKQAVVLNITEKQD---EYVQFVEDSLKNKGFRVFSDLRNEKIGFKIREHTIQRI 589

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           P  ++VG K V    V ++ R       MS+E
Sbjct: 590 PYLLVVGEKEVEAKTVAVRSRNGEDLGTMSIE 621


>gi|325298803|ref|YP_004258720.1| threonyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318356|gb|ADY36247.1| threonyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 647

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 161/432 (37%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 261 GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKLLYVTSGHYAKYGKDSFQ 320

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +      I+R+  +SYR+LP    +     R E      G+ R 
Sbjct: 321 PIHTPEEGEEYFLKPMNCPHHCMIYRNSPRSYRDLPLRIAEFGTVCRYEQSGELHGLTRV 380

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 381 RSFTQDDAHIF-CRPDQVKD-------EFLRVMDIISI---------------------- 410

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S +F +F          D ++    +   E W     A  +   EK   
Sbjct: 411 --------VFKSMNFENF---EAQISLRDKVNREKYIGSDENWEKAEQAIVEACQEKGLK 459

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + GAD + H  V + 
Sbjct: 460 AKVEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYMGADNQKHRPVMIH 519

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  PD VA   IS        +   +  +++   L
Sbjct: 520 RAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAVLPIS--------EKFNEYADQVRLEL 570

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K       DD  E+IG +    ++   P  +IVG K  ++ +V ++ +  G +  + +E
Sbjct: 571 KKYDIRALVDDRNEKIGRKIRDNEMKHIPYMLIVGEKEAANGEVSVRKQGEGDKGTVKIE 630

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 631 EFAKNIAEEVHN 642


>gi|114799933|ref|YP_761871.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123027650|sp|Q0BXC2|SYT_HYPNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114740107|gb|ABI78232.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 657

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 175/441 (39%), Gaps = 61/441 (13%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  +  + H    ++G   W P G      + A IR +Q+  G +E+  P 
Sbjct: 239 EAEKRDHRKLGAQLDLFHFQPEAQGSVFWHPKGFMIWRELEAYIRRQQDADGYVEVKTPQ 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADR-----NDKAMIYG--------PTHEEVMTDIFRS 120
           L ++  W +SG +  + + M  + D      +D  ++ G        P +      IF++
Sbjct: 299 LLNSVFWEKSGHWSKFRENMFVVPDEIPSTESDAPILSGEGELMALKPMNCPAHVQIFKN 358

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS--YNKM 177
             +SYR+LP    +     R+E      G+MR R+    DA+ F    + +  +  + K+
Sbjct: 359 AQRSYRDLPIRMAEFGCCHRNEAHGALHGLMRVRQMTQDDAHIFCREDQIADETLRFLKL 418

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F +   ++   GL  I  +  + P          + A T ET     K   D  + +   
Sbjct: 419 FET---VYGDFGLSEISYKLATRP---------EMRAGTDETWDRAEKALAD-ALTAAGM 465

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F       SI E   A Y    + H   L D++        R  + G    F   Y LP
Sbjct: 466 TF-------SIAEGEGAFYGPKLEFH---LTDAI-------GRTWQCG---TFQLDYVLP 505

Query: 298 --MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G+DG  H   M    + G       ++  ++ G   +W   ++P ++ +  I
Sbjct: 506 ERLDAEYTGSDGAKHRPVMLHRAVFGTFERFMGILIENYAGSFPLW---MSPVQVVVAAI 562

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  E+  A L K G  V  D   E I  +     +   P+  +VG++   D 
Sbjct: 563 T---DAAGDYAEEAAAALRKAGLRVEVDKRNETINYKVREHSVQKVPVIAVVGAREAEDR 619

Query: 415 KVEIKHRLTGIREDMSLEEVI 435
           K+ ++   +  ++ +SL+E +
Sbjct: 620 KLALRRLGSNGQQIISLDEAL 640


>gi|288574759|ref|ZP_06393116.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570500|gb|EFC92057.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 630

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 163/419 (38%), Gaps = 48/419 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G   ++ +     +   + G  ++  P + + DLW++SG +D Y +
Sbjct: 251 LHKEGPGFPFFHPKGMVVINTLIDFWSKVHRKNGYDQIRTPMILNRDLWIQSGHWDHY-R 309

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D+     P +      +++S + SYR+LP    ++ +  R E      G+M
Sbjct: 310 ENMYFTEIDDQPYAIKPMNCPGGILVYKSDLHSYRDLPLRLGELGIVHRHEKSGVLHGLM 369

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ +  TP+  K   + +      I+  +      +   + P     S E 
Sbjct: 370 RVRCFTQDDAHHY-CTPDQIKDEVSLIMDMVDYIYSEVFGFKFHVELSTRPDNSMGSDEM 428

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             LA+    +V   +       P +                  A Y    D H E     
Sbjct: 429 WELAEKSLREVLEERGTTYVLNPGDG-----------------AFYGPKIDFHLEDC--- 468

Query: 271 LPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
                        +G  +  GT    + +P     T+ G+DGK+H   M    I G++  
Sbjct: 469 -------------IGRTWQCGTIQLDFQMPEKFDVTYIGSDGKEHRPAMLHRTILGSIER 515

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    W   +AP ++ ++ +   D V  D  + + A L      V  D  
Sbjct: 516 FLGILIEHYAGAFPFW---IAPVQVKVLAV-GDDHV--DYAKDLKALLQDREYRVELDCR 569

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E++G +   A +   P  ++VG K +    V ++ R  G +  MS E+++     +FS
Sbjct: 570 DEKLGRKIRDAQMEKVPFMLVVGDKELETGTVSVRDRSEGDKGSMSKEDLLELLKGQFS 628


>gi|320353536|ref|YP_004194875.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122038|gb|ADW17584.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
          Length = 641

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 160/422 (37%), Gaps = 42/422 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +Y   + +   RD      +L L T +  Q   G+  W P G      +    ++E  R
Sbjct: 232 QQYLARLEEARKRDHRKLGKQLGLFT-IQDQIGPGLILWQPRGALLRRLIEDYWKDEHYR 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   DLW  SG  D YG+ M    + ++      P +      ++ +   
Sbjct: 291 NGYQLLYTPHIARQDLWKTSGHLDFYGENMYSAMEIDEVMYQLKPMNCPFHIGVYNADKH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR  P  + ++   +R E      G+MR R F   DA+ F    +  +  +N + ++ L
Sbjct: 351 SYREFPIRWCELGTVYRYERTGALHGLMRVRGFTQDDAHIFCRPDQLEEEIFNIIDLN-L 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    G     +   + P     S E   L+     Q    K       P E   +   
Sbjct: 410 HILKTFGFDQYDVYLSTRPEKYVGSDEHWQLSTQALKQALEKKGLAYQLDPGEGVFYGPK 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                    K+ D L  + + S   ++          ++LP     
Sbjct: 470 IDI--------------------KIKDQLGRSWQCSTIQVD----------FNLPERFQM 499

Query: 301 TFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG +H  + +    +G++     V+   + G   +W   +AP +  ++NI   DQ
Sbjct: 500 NYTGVDGAEHQPIMIHRALMGSLERFIGVLIEHYAGAFPLW---LAPEQARIMNI-TDDQ 555

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + CE+++ARL  +G  +  D   E++  +   A L+  P  +IVG +   +  V ++
Sbjct: 556 --GEYCEQVHARLRAMGVRIDKDVRNEKLNYKIREAQLMKVPYMLIVGEREKQEGTVTVR 613

Query: 420 HR 421
            R
Sbjct: 614 KR 615


>gi|222151594|ref|YP_002560750.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|222120719|dbj|BAH18054.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 642

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 161/386 (41%), Gaps = 34/386 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + S DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRRELERYIVDKEVALGYDHVYTPIMGSVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  ++A++  P +      ++++   SYR LP    ++ +  R E      G+ R R   
Sbjct: 322 EMENEALVLRPMNCPHHMMVYKNKPHSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           + DA+ F + P+  K  + ++    + ++     K    R         LS+      D+
Sbjct: 382 LNDAHIF-VRPDQIKEEFIRVVQLVIDVYKDFKFKEYKFR---------LSYR-----DS 426

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            +T+ +   D M         +  D + L+        A Y    DV   ++  +L + +
Sbjct: 427 EDTEKYFQDDEMWERAQLMLKEAVDEMGLDYEEAPGEAAFYGPKLDV---QVKTALGKEE 483

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHD 334
            +S   ++    F    ++ L     + G+DG+ H   +   G I  M    A +   + 
Sbjct: 484 TLSTVQLD----FLLPERFDL----EYIGSDGEKHRPVVIHRGVISTMERFVAFLTEEYK 535

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G   +W   +AP ++ +I +   ++V  D   K+Y  L   G     DD  E++G +   
Sbjct: 536 GAYPLW---LAPNQLEIIPVS--NEVHYDYARKLYDELKSQGVRCHIDDREEKMGYKIRE 590

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKH 420
           A +   P QV+VG K + +++V ++ 
Sbjct: 591 AQMHKVPYQVVVGDKEIENNEVNVRQ 616


>gi|256751279|ref|ZP_05492159.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749834|gb|EEU62858.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 634

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 160/412 (38%), Gaps = 51/412 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHGYQEIKTPIILNEELWRRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTEIDGETYAIKPMNCPGAMLVYKSTMHSYRDLPLRLCELGLVHRHELSGVLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TPE  +     +   V Y  +IF       +  R E+  +G D  
Sbjct: 373 RVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYFYKIFGFEYFVELSTRPENS-MGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A      +  + + ++ P      D               A Y    D H   L
Sbjct: 431 WELATNA------LISALNRVNLPYKVNEGD--------------GAFYGPKIDFH---L 467

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G DG+ H  + +     G++ 
Sbjct: 468 KDSI-------GRTWQCGTIQLDFQMPERFEL----EYIGPDGEKHRPIMLHRVIYGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP ++ ++ I           + +Y RL +       DD
Sbjct: 517 RFIGILTEHFAGA---FPTWLAPVQVRVLPISDKHYAY---AQNVYGRLLENDIRAELDD 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E++G +   A L   P  +IVG K V    V ++ R  G    +SL E I
Sbjct: 571 RNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKEGDLGAISLNEFI 622


>gi|322807830|emb|CBZ05405.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 412

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 1/136 (0%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ATF    GK     +    +   ++++ VIE + D  GI+WP   + FK+ +      D
Sbjct: 267 CATFIDNKGKSKPFTIYKGFMDIYKIISWVIEQNKDELGIVWPMETSAFKVIVTIANVKD 326

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEI
Sbjct: 327 EQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEI 385

Query: 419 KHRLTGIREDMSLEEV 434
           K R +  ++++ ++++
Sbjct: 386 KLRNSKEKKEIPIDQL 401


>gi|42779590|ref|NP_976837.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|81411119|sp|Q73E50|SYP2_BACC1 RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|42735506|gb|AAS39445.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 476

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ A R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGVSA-RMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQEHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +++E++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMEQL 376


>gi|301056082|ref|YP_003794293.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378251|gb|ADK07155.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 645

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 173/424 (40%), Gaps = 52/424 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIRE 59
           + AE+  H  ML       H K                G+  WLP G      +   I +
Sbjct: 229 KKAELDEHLRMLEEAKERDHRKLGKELKLFTNSQKVGQGLPLWLPKGATIRRIIERYIVD 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           ++   G   +  P L S +L+  SG ++ Y   M    + +++ ++  P +      +++
Sbjct: 289 KEASLGYDHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYK 348

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++ 
Sbjct: 349 NDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVV 407

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   GL++   R         LS+      D  +T+ + + D M         +
Sbjct: 408 NLTLEVYKDFGLENYSFR---------LSYR-----DPEDTKKYYADDEMWEKAQGMLKE 453

Query: 239 FDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D + L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L 
Sbjct: 454 AMDEMGLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFEL- 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               + G DGK H   +   G+ +   R VA +IE     KG  +P  +AP +  +I + 
Sbjct: 506 ---AYVGEDGKQHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQAQVIPVS 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              QV  D  +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ 
Sbjct: 559 P--QVHLDYAKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENG 616

Query: 416 VEIK 419
           V ++
Sbjct: 617 VNVR 620


>gi|159030629|emb|CAO88297.1| thrS [Microcystis aeruginosa PCC 7806]
          Length = 599

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 170/428 (39%), Gaps = 64/428 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M   +
Sbjct: 213 GLPLWTPKGTLIRSLLEDFLKKEQLKRGYLPVVTPHIARVDLFKISGHWQKYKEDMFPMM 272

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           AD  + A      +  P +      I++S ++SYR LP    +    +R E      G+ 
Sbjct: 273 ADDEESASKEIGFVLKPMNCPFHIQIYKSDLRSYRELPMRLAEFGTVYRYEQSGELGGLT 332

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGP-IGG 204
           R R F + D++ F +TPE     +  +    L +F  L LK+   R      ES   IG 
Sbjct: 333 RVRGFTVDDSHLF-VTPEQLDKEFLSVVDLILTVFKSLQLKNFKARLSFRDPESDKYIGS 391

Query: 205 DLSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFD---DIISLNSIVEQWTAPYAATS 260
           D + E    A     Q       MD F  P E   +    D I  +++  +W        
Sbjct: 392 DEAWEKAQSAIRKAVQTLG----MDYFEAPGEAAFYGPKLDFIFQDALEREW-------- 439

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSY 317
                                 ++G +      Y+LP      +   DG +   V +   
Sbjct: 440 ----------------------QLGTV---QVDYNLPERFELEYVAEDGNRKRPVMIHRA 474

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G++  +  ++   + G   +W   +AP +I L+ + +  Q+  D  +++  ++  +G 
Sbjct: 475 PFGSLERLIGILIEEYAGDFPLW---LAPVQIRLLPV-SDSQL--DYAKEVTVKMQLLGI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D  GE++G     A+    P+  +VG+K +  + + I+ R  G    +S+EEV+  
Sbjct: 529 RAETDTSGERLGKMIRNAETAKIPVMAVVGAKEMESNSLSIRTRAAGDLGVISVEEVVAK 588

Query: 438 ASHRFSNN 445
                 N+
Sbjct: 589 LESAIQNH 596


>gi|159899369|ref|YP_001545616.1| threonyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892408|gb|ABX05488.1| threonyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 604

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 171/425 (40%), Gaps = 57/425 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG------- 90
           G+  WLP G    D +   +R+ Q   G + +  P +   DL+  SG + +Y        
Sbjct: 217 GLALWLPKGAILRDVLERFLRQAQIERGYLPVVTPHMGKIDLYKTSGHWYTYRDGIFPPM 276

Query: 91  KEMLRLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           +E+      N +  IY   P +     +I+ S  +SYR+LP    +    +R E      
Sbjct: 277 REIENDDTENPEGEIYLLKPMNCPHHIEIYASEPRSYRDLPLRLAEFGTVYRYEHSGELT 336

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G++R R F + D++ F +TP+  +  + K+    L +F  +GLK    R           
Sbjct: 337 GLLRVRSFTVDDSHLF-VTPDQLEAEFLKVVDLILFVFGTMGLKDFQAR----------- 384

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFD--DIISLNSI-VEQWTAPYAATSDVHN 264
              + L + G  +   S +  +    ++N   +  +   LN I VE   A Y    D   
Sbjct: 385 ---VGLREVGNPKYIGSDEVWE---KAQNAIINAAEKKGLNYIVVEGEAAFYGPKLDF-- 436

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH---YVQMGSYGI 319
             +F      + V  R  ++G +      Y+LP      + G DG+ H    +    +G 
Sbjct: 437 --IF------RDVLGRQWQLGTV---QVDYNLPERFEIEYTGEDGQKHRPIMIHRAPFG- 484

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R V  +IE  + G   +W   +AP +++L+ I           E + A+L+  G  V
Sbjct: 485 SIERFVGTLIE-QYAGAFPVW---LAPVQVTLVPITDRHVAY---AESVAAKLNAQGLRV 537

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D    ++ ++   A  L  P  ++VG K      V ++ R  G    +S++E I    
Sbjct: 538 EVDASNNRMNAKIRDAQKLKIPYMLVVGDKEEEAGAVAVRQRSGGDLGSISVDEFIARIK 597

Query: 440 HRFSN 444
              +N
Sbjct: 598 DEVAN 602


>gi|327439263|dbj|BAK15628.1| threonyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 643

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 172/403 (42%), Gaps = 36/403 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S  L+  SG ++ Y   M   
Sbjct: 264 QGLPLWLPNGATIRRTIERYIVDKELSLGYKHVYTPVLGSKKLYETSGHWEHYQDGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      +F++ + SYR+LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMVFKNGLHSYRHLPIRIAELGTMHRYEMSGAVSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + K+    L ++    LK    R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKAEFKKVVELILEVYKDFDLKDFSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M +          D++     I E   A Y    DV   ++  ++ + 
Sbjct: 429 PNNTEKYFDDDQMWETAQAMLKEAMDELGYDYFIAEDEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    ++ G DG+     +   G+ +   R VA +IE  
Sbjct: 486 ETLSTAQLD----FLLPQRFDL----SYIGEDGQPQRPVVIHRGVVSTMERFVAFLIE-- 535

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            + KG  +P  +AP + ++I +   + V  D   ++  +L+  G  V  DD  E++G + 
Sbjct: 536 -EYKG-AFPTWLAPVQATIIPVS--NAVHYDYAREVQEKLAAAGIRVEMDDREEKLGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A +   P  +++G K V+++ V I+   +   E +S E+ +
Sbjct: 592 REAQMQKIPYMLVLGDKEVAENAVNIRRYGSKDSETISFEQFL 634


>gi|325954344|ref|YP_004238004.1| prolyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323436962|gb|ADX67426.1| Prolyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 492

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +GK  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 233 GKALQAGTSHFLGQNFAKAFDVKFTTNEGKQDYVWATSWGV-STRLMGALIMTHSDDYGL 291

Query: 339 IWPDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDV-FWDDMGEQIGSQFAV 394
           + P  +AP ++ ++ I ++ +Q+ +  +   +I   L  +G  V F DD   + G +FA 
Sbjct: 292 VLPPKIAPIQVVIVPIFRSEEQLIQVSEVANRIKNELHSIGISVKFDDDEKTKPGWKFAE 351

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++ +G K + +++VEI  R T  +  + ++ + +Y  +
Sbjct: 352 YELKGVPVRIAIGPKDLENNQVEIARRDTLEKSTIPMDGISSYVEN 397



 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK M+    + ++ +I  PT E ++   +++ I+SYR+LP    Q     R E+R R   
Sbjct: 104 GKLMVDPEAKLEEELIVRPTSEAIIWSTYKNWIQSYRDLPILINQWANVVRWEMRTRL-F 162

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+ EFL ++ ++   T E +     +M   Y  +
Sbjct: 163 LRTTEFLWQEGHTAHATKEEAISESRQMLDVYTEV 197


>gi|241764278|ref|ZP_04762308.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241366347|gb|EER60877.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 639

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 152/394 (38%), Gaps = 62/394 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I  H+ G+  W P G      V   +R      G +E+  P L    LW ++G +D Y  
Sbjct: 255 IDDHAPGVVFWHPKGWAVWQQVEQYMRRVYRDNGYLEVKGPQLLDKTLWEKTGHWDKYRD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    +++ D A+   P +      IF+  IKSYR+LP  + +     R+E      G+
Sbjct: 315 NMFTTESEKRDYAL--KPMNCPGHILIFKQGIKSYRDLPLRYGEFGQCHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSF----DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---I 202
           MR R F   D + F     + PE +  +Y  +     +++   G  +I  +  + P   I
Sbjct: 373 MRVRGFTQDDGHIFCTEDHILPECT--AYTALL---QKVYKDFGFSNIIYKVATRPEARI 427

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           G D S       D  E  +  S       + +   +F+             AP       
Sbjct: 428 GSDESW------DKAEHALMES-------LRASGCEFE------------IAP--GDGAF 460

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGS 316
           +  K+  +L +          +G  +  GT    +S+P  + A + G DG  H  V +  
Sbjct: 461 YGPKIEYTLKDA---------IGRQWQCGTMQVDFSMPERLDAEYVGEDGARHRPVMLHR 511

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
             +G++     ++   H G    W   +AP +IS++NI  A    CR+   K+   L   
Sbjct: 512 AIVGSLERFIGILIEQHSGALPTW---LAPVQISVLNITDAQADYCREIAAKLQKLLPHQ 568

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
              V  D   E+I  +     L   P  ++ G K
Sbjct: 569 DLRVGLDLRNEKITYKIREHSLQKLPYILVAGDK 602


>gi|71894504|ref|YP_278612.1| prolyl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|114152218|sp|Q4A5S0|SYP_MYCS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71851292|gb|AAZ43901.1| prolyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 482

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 5/158 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G K+S P   +FK  + ++ +V   S+G+ + R++ A+I    D +G+
Sbjct: 221 GKALQTGTSHYLGQKFSRPYGISFKNKNNEEDFVYQTSWGV-STRLLGAIIMVHGDNRGV 279

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I P  +AP K+ ++ I A  + +V + A  KIY  LSK    V  D   +  G + + ++
Sbjct: 280 IIPPKIAPIKVDILEILADKNPEVSKVA-NKIYKELSK-KLSVRLDASNKSPGFKASQSE 337

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G PL++ VG + + ++ V    R T  +  + LE V
Sbjct: 338 IEGVPLRIEVGPRDLENNCVTFVRRDTLEKTKVDLENV 375



 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 10/158 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M +  +KG   + P      +N+   + E   + G   +  P      L+ +E      +
Sbjct: 28  MNYGPAKGTIIYKPNSYGIWENIQKTLNEVFKKHGVENIYAPLFIPESLFKIEKEHVQGF 87

Query: 90  GKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDEL 143
             E+  +    +K +    I  PT E +  ++F+  I SY +LP  + Q    +++    
Sbjct: 88  NPELATVTQVGNKKLSEKLIVRPTSEVIFANLFKEDINSYNDLPKIYNQWANVVRWEKVT 147

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +P    +R+REFL ++ ++   + E ++    KM   Y
Sbjct: 148 KP---FLRTREFLWQEGHTSHSSAEEARSFTVKMIKEY 182


>gi|149371736|ref|ZP_01891152.1| threonine--tRNA ligase (threonine tRNA synthetase) [unidentified
           eubacterium SCB49]
 gi|149355363|gb|EDM43923.1| threonine--tRNA ligase (threonine tRNA synthetase) [unidentified
           eubacterium SCB49]
          Length = 647

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 181/450 (40%), Gaps = 57/450 (12%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +L+E   RD      +L L T    +  +G+  WLP G    + +   +++ 
Sbjct: 226 KELKEYLALLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKA 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-ND-KAMIYGPTHEEVMTDIF 118
           Q + G   +  P + + +L+V SG +  YG++  ++ +  ND +  +  P +     +I+
Sbjct: 285 QKKAGYEMVVTPHIGNKELYVTSGHFAKYGEDSFQVINTPNDGEEFMLKPMNCPHHCEIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +   SY++LP    +    +R E      G+ R R F   DA+ F  TP+     + K+
Sbjct: 345 NAKPMSYKDLPKRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFKKV 403

Query: 178 FVSYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
               L +F  LG +     + +R  S P       ++I    T E               
Sbjct: 404 IDLVLYVFGSLGFEKFTTQVSIRDMSKP------EKYIGDVSTWEK-------------- 443

Query: 234 SENTDFDDI--ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +EN   + +    L+ IVE+  A +            D +   K    R  ++G I    
Sbjct: 444 AENAILNAVKDKGLDYIVEEGEAAFYGPK-------LDFMV--KDALGRSWQLGTI---Q 491

Query: 292 TKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVAP 346
             Y+LP     T+KG+D + H  V +     G++    A++     G   +W  P+ VA 
Sbjct: 492 VDYNLPERFELTYKGSDNELHRPVMIHRAPFGSLERFVAILLEHTGGNFPLWLMPEQVAI 551

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
             +S        +   +  EK+   L         D+  E IG +   A++   P  +I+
Sbjct: 552 LSLS--------EKYEEYAEKVLNLLENHDIRALVDNRNETIGKKIREAEMNKIPYMLIL 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G +  +D  + ++    G    M++E   N
Sbjct: 604 GEQEENDGTISVRKHSEGDLGTMTVEAFGN 633


>gi|326404590|ref|YP_004284672.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325051452|dbj|BAJ81790.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 640

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 160/429 (37%), Gaps = 49/429 (11%)

Query: 17  DAEIASHKLMLRT-GMIHQHSKGIYS--WLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R   + H   + + S  W   G +    V A +R  Q   G IE+  P 
Sbjct: 238 EAERRDHRKIGRQMDLFHMQEEAVGSVFWHEKGWRLYRTVEAYMRRRQEEFGYIEVRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG +D+Y   M +   +  DK +   P +      IF   ++SYR LP   
Sbjct: 298 LLDRKLWEASGHWDNYRSHMFIAEVEDEDKVLAVKPMNCPCHVQIFNHGLRSYRELPLRM 357

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGL 190
            +     R E      G+MR R F   DA+ F    E         FV  L R++   G 
Sbjct: 358 AEFGACHRYEPSGALHGIMRVRAFAQDDAHIF--CTEDQIADETVRFVEMLRRVYADFGF 415

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDFD---DIISLN 246
               ++    P     S E    A+    +  C    + F + P E   +    + +  +
Sbjct: 416 PEFAVKFADRPTPRSGSDEVWDKAEAA-LRSACETAGVTFTVNPGEGAFYGPKLEFVLRD 474

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +I   W         V  E+L  S    +   AR + +                      
Sbjct: 475 AIGRDWQCGTLQVDFVLPERLDASYVTAESGRARPVML---------------------- 512

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
              H   +GS+     R +  +IE+   G+  +W   +AP + ++ +I        D  E
Sbjct: 513 ---HRAIVGSF----ERFIGILIENCA-GRFPLW---LAPTQAAVASIVTD---ANDYAE 558

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A+L + G  V  D   E+I ++     L   P  ++VG +      V I+   +  +
Sbjct: 559 TVAAKLKEAGLAVATDTRNEKINAKVRDLSLALVPNILVVGRREAEQQTVSIRRLGSDKQ 618

Query: 427 EDMSLEEVI 435
           + M+L+E +
Sbjct: 619 DSMTLDEAV 627


>gi|224499783|ref|ZP_03668132.1| threonyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 640

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 182/436 (41%), Gaps = 38/436 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R         LS+      D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFR---------LSYR-----DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + ++    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 452 MEMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + A   
Sbjct: 501 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMEIIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++
Sbjct: 557 L--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVR 614

Query: 420 HRLTGIREDMSLEEVI 435
              +   E M L+  I
Sbjct: 615 RYGSKDSETMDLDAFI 630


>gi|281203096|gb|EFA77297.1| threonyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 716

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H +S G   +LP G +  + +   IR E +R G  E+  PT+ S  LW ESG +  YG+ 
Sbjct: 337 HPYSPGCAFFLPHGTRIYNRLVEFIRHEYHRRGFTEVITPTMFSQQLWEESGHWAKYGEN 396

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L   +D+     P +      +F +  +SYR LP  F    +  R+EL     G+ R
Sbjct: 397 MFNLK-CDDQNYSLKPMNCPSHCLMFGNRSRSYRELPIRFADFGVLHRNELAGALTGLTR 455

Query: 152 SREFLMKDAYSFDLTPE 168
            R+F   DA+ F  TP+
Sbjct: 456 VRKFQQDDAHIF-CTPD 471


>gi|296332117|ref|ZP_06874581.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675488|ref|YP_003867160.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150888|gb|EFG91773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413732|gb|ADM38851.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 643

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 166/406 (40%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y + M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKEISLGYEHVYTPVLGSKELYETSGHWDHYQEGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMIYKQDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFIRTVRLIQDVYEDFGLSDYTFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   +  D I  +    E   A Y    DV   ++  ++ + 
Sbjct: 429 PEDTEKYFDDDEMWNKAQSMLKEAMDEIGHDYYEAEGEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYIGEDGKQHRPVVIHRGVVSTMERFVAFLIE-E 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL + G  V  D   E+IG + 
Sbjct: 537 HKGALPTW---LAPVQFQVIPVSP--SVHLDYAKKVQERLQREGLRVEVDSRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E +SL++ +  A
Sbjct: 592 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQNSETISLDDFVKKA 637


>gi|150866378|ref|XP_001385956.2| proline-tRNA ligase [Scheffersomyces stipitis CBS 6054]
 gi|149387634|gb|ABN67927.2| proline-tRNA ligase [Scheffersomyces stipitis CBS 6054]
          Length = 682

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 135/346 (39%), Gaps = 72/346 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 278 DEHIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 337

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT E +    +++   Y RI+  L   ++P                +V     E +
Sbjct: 338 HTAHLTKEEAAKEVDEILDLYARIYEEL--LAVP----------------VVKGKKTENE 379

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   D+                   + VE + A                       + R
Sbjct: 380 KFAGGDY------------------TTTVEGFIA----------------------ATGR 399

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKG 337
           GI+     + GT +S   + + +  DG D    +    S+G+ + RV+  ++ +  D KG
Sbjct: 400 GIQGATSHHLGTNFSKMFNISVENPDGADKPRVFAFQNSWGL-STRVIGVMVMTHSDNKG 458

Query: 338 IIWPDSVAPFKISLINI----KAHDQ---VCRDACEKIYARLSKVGCDVFWD--DMGEQI 388
           ++ P  VA  +  +I +    K  D+      D    I ARL  V      D  D+    
Sbjct: 459 LVLPPRVAQTQAVVIPVGLTSKTTDEQRKAINDGAADIEARLKAVDVRAIGDYRDIYTP- 517

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +FA  +L G PL++  G K +S  +  +  R  G +  + L E+
Sbjct: 518 GWKFAEWELKGVPLRIEFGPKDLSSEQATVVRRDNGAKYTVKLAEL 563


>gi|315222497|ref|ZP_07864386.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188183|gb|EFU21909.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 650

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 166/411 (40%), Gaps = 47/411 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I + +   G   +  P L S DL+  SG ++ Y ++M   
Sbjct: 261 QGLPFWLPDGATIRRIVERYITDREVNDGYQHVYTPPLASVDLYKTSGHWEHYQEDMFPP 320

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +     +++++H+ SYR LP    ++ +  R E      G+ R RE
Sbjct: 321 MDMGDGEQFVLRPMNCPHHIEVYKNHVHSYRELPIRIAELGMMHRFEKSGALSGLQRVRE 380

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D++ F + PE  +  +  +    + ++    +     R              +   
Sbjct: 381 MTLNDSHLF-VMPEQIQEEFKHVLDLMIDVYKDFNITDYRFR--------------LSYR 425

Query: 215 DTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           D  +   +   D M      EN         DD+       E   A Y    DV   ++ 
Sbjct: 426 DPNDKHKYFDNDEM-----WENAQRMLKGAMDDLGLDYFEAEGEAAFYGPKLDV---QVK 477

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVA 326
            +L   + +S   ++    F    ++ L     + GADG++H   M   GI +   R +A
Sbjct: 478 TALGNEETLSTIQLD----FLLPERFDL----HYIGADGEEHRPVMIHRGIVSTMERFIA 529

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +IE+    KG  +P  +AP ++++I I   ++   D   K+   L   G  V  D+  E
Sbjct: 530 YLIETY---KG-AFPTWLAPHQVTVIPIS--NEAHADYAWKVAKELRNRGVRVDVDERNE 583

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++  +   +     P Q+IVG K  +D  V ++   +      ++ E +N+
Sbjct: 584 KMQYKIRQSQTHKVPYQLIVGDKEQADGTVNVRRYGSKQTHTETVAEFVNH 634


>gi|303233025|ref|ZP_07319704.1| threonine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302480896|gb|EFL43977.1| threonine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 589

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 160/402 (39%), Gaps = 56/402 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+++   G   WLP G +  + +    +E Q++ G  ++  P + S  LW  SG +D Y 
Sbjct: 207 MLNEAGPGFPFWLPNGMRIRNELMKYWQEMQDQYGYEQIQTPIILSRKLWETSGHWDHY- 265

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +      ++ S  +SYR+LP    +  L  R EL+    G+
Sbjct: 266 KENMYTTVIDDEDFAIKPMNCPGACLVYMSKPRSYRDLPLKLAEAGLDHRHELKGTLHGL 325

Query: 150 MRSREFLMKDAYSFDLTPE---GSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGG 204
            R REF   DA+ F + P+          ++  +Y + F        P + E  + P   
Sbjct: 326 FRVREFTQDDAHLF-IRPDQICDEVREVTELISAYYKQF------GFPYKVELSTRPENS 378

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S E    A+ G      +   +D+ I   +  F                Y    D H 
Sbjct: 379 MGSDEDWATAEAGLRDALETMG-LDYTINEGDGAF----------------YGPKIDFH- 420

Query: 265 EKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIG 320
             L D L        R  + G I   F F   ++L     +  +DG K   + +   G G
Sbjct: 421 --LKDCL-------GRTWQCGTIQLDFQFPHNFNL----EYVDSDGQKKRPIMIHRAGFG 467

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   ++GK  +W   +AP ++ ++ +    +  RD   ++  +L K+   V 
Sbjct: 468 SFERFIGMLIEQYEGKFPVW---LAPLQVKVLPVS---EKTRDYARELTQKLLKLKIRVK 521

Query: 381 WDDMGEQIGSQFAVADLLG-FPLQVIVGSKFVSDSKVEIKHR 421
            DD  E+IG +   A  +   P  +IVG +      + ++ R
Sbjct: 522 LDDRDEKIGYKIREARSIDRVPYMLIVGEQEAQAGNISVRDR 563


>gi|255523430|ref|ZP_05390399.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296184712|ref|ZP_06853123.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255512888|gb|EET89159.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296050494|gb|EFG89917.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 478

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           FGT ++   +  +   +GK  YV   S+GI   R++ A+I    D  G+  P  +AP ++
Sbjct: 236 FGTNFAEAFNMQYTDKNGKLQYVHQTSWGI-TTRLIGAIIMVHGDDSGLKLPPRIAPIQV 294

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ I  H +   +   ++ AR+SK+   V  DD  +  G +FA  ++ G P+++ VG K
Sbjct: 295 VIVPIAQHKEGVLEKAAELKARISKIA-RVKVDDSDKMPGWKFAEYEMKGVPIRLEVGPK 353

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEV 434
            +  ++V +  R  G +  +S++E+
Sbjct: 354 DIEKNQVVLVRRDNGEKISVSMDEI 378


>gi|302871393|ref|YP_003840029.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574252|gb|ADL42043.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 639

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 161/416 (38%), Gaps = 47/416 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I     G   +LP G    + +    REE  R G  E+  P + + DLW++SG +D Y K
Sbjct: 258 IFDEGPGFPFFLPKGMIIRNILEDFWREEHKRRGYQEIKTPIMLTKDLWIQSGHWDHY-K 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D+     P +      +++    SYR LP    ++ L  R EL     G+M
Sbjct: 317 ENMYFTKIDDQEFAIKPMNCPGSILVYKRKSHSYRELPQRLCELGLVHRHELSGVLHGLM 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F + P   K     +       +   G K    +  R E+  +G D  
Sbjct: 377 RVRCFTQDDAHIF-MLPSQIKDEIKGVIDLIDYFYSVFGFKYHVELSTRPENS-MGTD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEK 266
            E   +A+T   +                    + + +N  I E   A Y    D H E 
Sbjct: 433 -EQWNMAETALKEAL------------------EEVGINYKINEGDGAFYGPKIDFHLE- 472

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
             DSL    + +   ++    F    ++ L     + G DG  H  V +     G++   
Sbjct: 473 --DSLKRTWQCATIQLD----FQMPERFDL----YYIGEDGAKHRPVMLHRVVFGSIERF 522

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++     G   +W   +AP +I +I +  +     D   KI   L + G  V  D   
Sbjct: 523 IAILTEHFAGAFPVW---LAPTQIRVIPVSDN---FNDYAAKISQTLKENGFRVEEDYRS 576

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           E +G +   A L   P  VIVG K   ++ + ++ R  G     +++E ++    +
Sbjct: 577 ETVGYKIRDAQLQKIPYMVIVGEKEQKENTIAVRDRKKGDLGSFTIDEFVSMVKEK 632


>gi|16803599|ref|NP_465084.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501501|ref|ZP_03669808.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|22654119|sp|Q8Y6X2|SYT_LISMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16410988|emb|CAC99637.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 640

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 182/436 (41%), Gaps = 38/436 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R         LS+      D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFR---------LSYR-----DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + ++    E   A Y    DV   ++  ++ + + +S   ++    F    ++ L    T
Sbjct: 452 MEMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFDL----T 500

Query: 302 FKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + A   
Sbjct: 501 YIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEY---KG-AFPTWLAPVQMEIIPVNADAH 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++
Sbjct: 557 L--DYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVR 614

Query: 420 HRLTGIREDMSLEEVI 435
              +   E M L+  I
Sbjct: 615 RYGSKDSETMDLDAFI 630


>gi|89094703|ref|ZP_01167639.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89081049|gb|EAR60285.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 639

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/424 (20%), Positives = 155/424 (36%), Gaps = 72/424 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R++      +E+  P +    LW +SG ++ + +
Sbjct: 255 LQEEAPGMVFWHPKGWALYQGIEQYMRQKLRPRKYVEVKTPQVVERTLWEKSGHWEKFSE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           EM      N +     P +      ++   I+SYR+LP    +     R+E      G+M
Sbjct: 315 EMFTTHSEN-RDFAVKPMNCPCHVQVYNQGIRSYRDLPLRMAEFGSCHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDL 206
           R R F+  D + F    E S  S    F+ +L  ++   G + I  +  + P   +G D 
Sbjct: 374 RVRGFVQDDGHIF--CAEDSIQSEVSEFIDFLHEVYADFGFQEIQYKLSTRPEKRVGSD- 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD-VHNE 265
                                                      E W     A +D + N 
Sbjct: 431 -------------------------------------------EVWDKSEKALADALDNA 447

Query: 266 KL-FDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYV 312
            L +D LP         IE      +G ++  GT    +S+P  + A F    G ++  V
Sbjct: 448 GLKWDLLPGEGAFYGPKIEFSLKDCLGRVWQCGTVQVDFSMPGRLGAQFVNEQGERETPV 507

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G+      ++  ++ G    W   +AP +  ++NI        D CEK+   L
Sbjct: 508 MIHRAILGSFERFIGILIENYAGALPTW---LAPVQAVVMNITDKQA---DYCEKVVQNL 561

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D   E+IG +     L   P  +++G K V    V ++ R       M L+
Sbjct: 562 ENKGFRAESDLRNEKIGFKIRERTLQKVPYLLVIGDKEVEAGAVAVRTRTGEDLGSMPLD 621

Query: 433 EVIN 436
           E +N
Sbjct: 622 EFVN 625


>gi|154706797|ref|YP_001424763.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|154356083|gb|ABS77545.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 660

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 167/440 (37%), Gaps = 77/440 (17%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+L+ +   + H    S G   W P G   +  +   IR   ++ G  E+  P 
Sbjct: 246 EAEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIRHITHKYGYQEVHTPQ 305

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L  A LW +SG    +G ++  L     + +I  P        IF   +KSYR+LP  + 
Sbjct: 306 LIDASLWDKSGHLGKFGDDIFSLPLEPQQYVI-KPMSCPAHVQIFNQGVKSYRDLPLRYA 364

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F    E    S    F+  L          
Sbjct: 365 EFGACHRNEPSGTLHGLMRLRGFVQDDAHIF--CTEDQIQSEVSAFIDQL---------- 412

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                          HE  V AD G T+V           P +    D++         W
Sbjct: 413 ---------------HE--VYADFGFTEVIHKLSTR----PEKRVGSDEV---------W 442

Query: 253 TAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
           T    A ++  N K   +D LP         IE      +G I+  GT    +S+P  + 
Sbjct: 443 TKAEQALAEALNRKGVEWDILPGEGAFYGPKIEFSLRDCLGRIWQCGTVQVDFSVPERLG 502

Query: 300 ATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           A +   DG        H   +GS+     R +  ++E S  GK  +W   +AP ++ ++N
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSF----ERFLGILLEESA-GKLPLW---LAPVQVVVMN 554

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D   +    L  +G     D   E+IG +     +   P  V++G + V+D
Sbjct: 555 ITDRQA---DYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVAD 611

Query: 414 SKVEIKHRLTGIREDMSLEE 433
             + ++         ++LEE
Sbjct: 612 KTLSVRALEDEASTTITLEE 631


>gi|330443967|ref|YP_004376953.1| threonyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807077|gb|AEB41250.1| threonyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 635

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 173/445 (38%), Gaps = 53/445 (11%)

Query: 1   MRRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           M+  K  L  L+E   RD  +   KL L +    +++ G+  + P G    D +    +E
Sbjct: 220 MQELKEHLHQLEEAKKRDHRVLGVKLDLFSQ--QEYAAGMPFFHPRGMIIWDALINFWKE 277

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIF 118
              R G  ++  P L +  LW  SG + +Y + M  L  D  + A+   P +       +
Sbjct: 278 LHARAGYQQIKTPQLMNQRLWEISGHWQNYKENMYTLTLDEENYAI--KPMNCPGCMLYY 335

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++H+ SY+  P    +I    R E+     G+MR R F   DA+ F LTPE  +     +
Sbjct: 336 KTHLHSYKEFPLRVAEIGHVHRHEVSGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNI 394

Query: 178 FVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                +++H  GL     +  R ++G IG D   E      T   Q    K    F I  
Sbjct: 395 LDLVAKLYHTFGLAYHLELSTRPKTGTIGSDELWEHA----TSALQRALEKSGSSFIITP 450

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFG 291
           E   F                Y    D+H +   +          R  + G I    +  
Sbjct: 451 EEGAF----------------YGPKIDIHVKDAIN----------RTWQCGTIQLDMFLP 484

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            ++ L  +       GK   V +     G++     ++     GK  +W   ++P ++ L
Sbjct: 485 ERFHLEYT---NAEGGKSIPVMLHRALFGSIERFLGILIEHFKGKFPLW---ISPEQVRL 538

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I + A   + R    ++  +   +G  V  DD  E +  +   A  +     V +G + V
Sbjct: 539 ITV-ADRHIPR--ARELAQKWQNLGLVVTVDDASESVSKKIRNAQTMQVNYMVTLGDQEV 595

Query: 412 SDSKVEIKHRLTGIREDMSLEEVIN 436
           +++ + I+ R   +  D+S E+ +N
Sbjct: 596 ANNTLAIRTRDNRVINDVSEEKFLN 620


>gi|290580052|ref|YP_003484444.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996951|dbj|BAH87552.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 649

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 164/395 (41%), Gaps = 38/395 (9%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I +++  +G   +  P + S DL+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPDGATIRRIIERYITDKEVASGYQHVYTPPIASVDLYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D ++ +  P +     +++++H+ SYR LP    ++ +  R E      
Sbjct: 314 REDMFPTMDMGDGESFVLRPMNCPHHIEVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F +  +  +  + +     + ++    L     R         LS
Sbjct: 374 GLQRVREMTLNDGHTF-VALDQVEDEFKRTLQLIIDVYEDFNLTDYSFR---------LS 423

Query: 208 HEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +      D  +T  +   D M +          DD+       E   A Y    D+   +
Sbjct: 424 YR-----DPNDTHKYFDDDEMWEKSQTMLKAAMDDMGLDYYEAEGEAAFYGPKLDI---Q 475

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RV 324
           +  +L  ++ +S   ++    F    ++ L    T+ GADG++H   M   GI +   R 
Sbjct: 476 VKTALGNDETLSTIQLD----FLLPERFEL----TYIGADGEEHRPVMIHRGIVSTMERF 527

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            A +IE+    KG  +P  +AP ++++I I     +  D   ++   L   G     DD 
Sbjct: 528 TAYLIETY---KG-AFPTWLAPHQVTVIPISNEAHI--DYAWEVAKELRDHGIRADVDDR 581

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            E++  +   +     P Q+IVG K V    V ++
Sbjct: 582 NEKMQYKIRQSQTKKVPYQLIVGDKEVESGTVNVR 616


>gi|332878463|ref|ZP_08446184.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683558|gb|EGJ56434.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 647

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 153/428 (35%), Gaps = 65/428 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +++ Q R G  ++  P +   +L+V SG Y  YGK+  +
Sbjct: 261 GKGLPMWLPKGTALRLRLEDFLKKIQKRYGYQQVMTPHIGGKNLYVTSGHYAHYGKDSFQ 320

Query: 96  L--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                  D+  +  P +     +I+    +SY++LP    +    +R E      G+ R 
Sbjct: 321 PIHTPEADEEYMLKPMNCPHHCEIYAWKPRSYKDLPLRIAEFGTVYRYEQSGELHGLTRV 380

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K  + ++      IF              G +  D     I 
Sbjct: 381 RSFTQDDAHIF-CRPDQVKDEFIRVMEIIQIIF--------------GALNFDTFEAQIS 425

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D    + +   D                       E W     A  +   EK  ++  
Sbjct: 426 LRDPNNREKYIGSD-----------------------EVWEEAENAIIEACKEKGLNAKV 462

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      + G D + H  V +    
Sbjct: 463 EYGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFKLEYTGEDNQKHRPVMIHRAP 522

Query: 319 IGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G+M    AV+     G   +W  PD VA   IS        +   D  +K+ A   +  
Sbjct: 523 FGSMERFCAVLIEHTAGHFPLWLTPDQVAILPIS--------EKFNDYAQKLCAYFDEQD 574

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                DD  E+IG +    ++   P  +IVG K  +D  V ++ +  G +  M  E+   
Sbjct: 575 VRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAADGTVSVRKQGEGDQGSMKFEDFAK 634

Query: 437 YASHRFSN 444
             +    N
Sbjct: 635 KINEEVRN 642


>gi|327313290|ref|YP_004328727.1| proline--tRNA ligase [Prevotella denticola F0289]
 gi|326944871|gb|AEA20756.1| proline--tRNA ligase [Prevotella denticola F0289]
          Length = 493

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 87/161 (54%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++++I I   ++  ++   K+     +L ++G  V +DD   ++ G +FA 
Sbjct: 295 VLPPRIAPIQVAIIPIFKGEEQLKEITAKLQPVIDQLRELGITVKYDDSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + D+ +E+  R T  +E++S + ++
Sbjct: 355 YELKGVPVRLAMGGRDLQDNTIEVMRRDTLEKENVSFDGIV 395


>gi|167040680|ref|YP_001663665.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307724045|ref|YP_003903796.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|166854920|gb|ABY93329.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307581106|gb|ADN54505.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 634

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 160/413 (38%), Gaps = 51/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHGYQEIKTPIILNEELWRRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTEIDGETYAIKPMNCPGAMLVYKSTMHSYRDLPLRLCELGLVHRHELSGVLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TPE  +     +   V Y  +IF       +  R E+  +G D  
Sbjct: 373 RVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYFYKIFGFEYFVELSTRPENS-MGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A      +  + + ++ P      D               A Y    D H   L
Sbjct: 431 WELATNA------LISALNRVNLPYKVNEGD--------------GAFYGPKIDFH---L 467

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G DG+ H  + +     G++ 
Sbjct: 468 KDSI-------GRTWQCGTIQLDFQMPERFEL----EYIGPDGEKHRPIMLHRVIYGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP ++ ++ I           + +Y RL +       DD
Sbjct: 517 RFIGILTEHFAGA---FPTWLAPVQVRVLPISDKHYAY---AQNVYGRLLENDIRAELDD 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E++G +   A L   P  +IVG K V    V ++ R  G    +SL E I 
Sbjct: 571 RNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKEGDLGAISLSEFIE 623


>gi|73981325|ref|XP_850160.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 2
           [Canis familiaris]
          Length = 721

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 176/435 (40%), Gaps = 74/435 (17%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E  R G  E+  PT
Sbjct: 299 EAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRRGFSEVKTPT 358

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADR------------NDKAMIYGPTHEEVMTDI 117
           L SA LW  SG ++ Y ++M  L    +DR            +   +   P +      +
Sbjct: 359 LFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTSHSTDTLALKPMNCPAHCLM 418

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS--- 173
           F    +S+R LP       +  R E      G+ R R F   DA+ F   P+  +     
Sbjct: 419 FAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIF-CAPDQLEEEIQG 477

Query: 174 ---YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              + +   + L    RL L + P    SG +G         L D  E QV   +   +F
Sbjct: 478 CLDFLRSVYAVLGFSFRLALSTRP----SGFLGES------CLWDQAE-QVL-QRALEEF 525

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
             P +    D             A Y    DVH   L D+L        R  + G I   
Sbjct: 526 GEPWDLKPGDG------------AFYGPKIDVH---LHDAL-------GRPHQCGTI--- 560

Query: 291 GTKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              + LP+     +KG  G  +  V +    +G++  +  V+  S+ GK   WP  ++PF
Sbjct: 561 QLDFQLPLRFDLQYKGQAGVLERPVLIHRAVLGSVERMLGVLAESYGGK---WPLWLSPF 617

Query: 348 KISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           ++ +I + A  ++  R+A +++ A  + + CD+   D G  +  +   A L  +  Q +V
Sbjct: 618 QVVVIPVGAEQEEYAREAQQRLQA--AGLVCDLD-ADSGLTLSRRVRRAQLAHYNFQFVV 674

Query: 407 GSKFVSDSKVEIKHR 421
           G K  S   V I+ R
Sbjct: 675 GQKEQSKKTVNIRTR 689


>gi|291564005|emb|CBL42821.1| prolyl-tRNA synthetase, family I [butyrate-producing bacterium
           SS3/4]
          Length = 477

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 133/330 (40%), Gaps = 69/330 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D ++  I SYR+LP  + Q    +++    RP    +RSREFL ++ ++   
Sbjct: 114 PTSETLFCDFYQKDIHSYRDLPKVYNQWCSVVRWEKTTRP---FLRSREFLWQEGHTAHA 170

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E ++    +M   Y                                AD      FC +
Sbjct: 171 TAEEAQERTIQMLNLY--------------------------------AD------FC-E 191

Query: 226 DFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           DF+  P+   + TD +             A Y   S +H+ K   S              
Sbjct: 192 DFLAIPVVRGQKTDKEKFAGAE-------ATYTIESLMHDGKALQS-------------- 230

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G    FG  ++      +   D +  YV   S+G+   R++ A+I    D +G++ P +V
Sbjct: 231 GTSHNFGDGFAKAFGIQYSDKDNQLKYVHQTSWGM-TTRMIGAIIMVHGDNEGLVLPPNV 289

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP ++ ++ I+   +   +   ++   LS     V  DD  +  G +F+ +++ G P++V
Sbjct: 290 APTQVVIVPIRQQQEGVLEKAREVEEVLSNFRVKV--DDSDKSPGWKFSESEMRGIPVRV 347

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +G K +   +  +  R T  +  ++L E+
Sbjct: 348 ELGPKDIEAGQAVLVRRDTHEKITVALSEI 377


>gi|282877938|ref|ZP_06286747.1| proline--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299939|gb|EFA92299.1| proline--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 493

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 97/198 (48%), Gaps = 10/198 (5%)

Query: 249 VEQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            EQW A P         E+   +L     E      + ++ G   + G  ++     T+ 
Sbjct: 201 AEQWMAVPVVQGVKSETERFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTYL 260

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I  +++  + 
Sbjct: 261 NKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKLAPIQVVIIPIAKNEEQLKA 319

Query: 364 ACEKIYA---RLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +K+      L K+G  V +DD   ++ G +FA  +L G P+++++G + + ++ +E+ 
Sbjct: 320 IADKLNPFMDDLKKLGITVKYDDSNNKRPGFKFADYELKGVPVRLVMGGRDLENNTIEVM 379

Query: 420 HRLTGIREDMSLEEVINY 437
            R T  +E + +E + +Y
Sbjct: 380 RRDTLEKETIPVEGLADY 397



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+S+R+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    KM   Y
Sbjct: 173 WQEGHTAHATREEAEEEAQKMLKVY 197


>gi|99035129|ref|ZP_01314912.1| hypothetical protein Wendoof_01000242 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 536

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 161/412 (39%), Gaps = 51/412 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W   G    + + + IR++    G  E+  P L S +LW  SG +D + +
Sbjct: 156 IQEEAVGQVFWHEQGYILYNVLESYIRKKLINNGYFEVKTPILVSKELWERSGHWDKFRE 215

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + +  +K +   P +      IF SH +SYR+LP    +     R+E      G+M
Sbjct: 216 NMFIVDESENKKLAIKPMNCPCHVQIFNSHTRSYRDLPIRMAEFGTCHRNESSGSLHGLM 275

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHE 209
           R R F   DA+ F +  E   +S    F   L+ ++  LG   I ++    P   D+   
Sbjct: 276 RVRGFTQDDAHIFCM--EEQVNSETIKFCDLLKEVYSELGFNEISVKFSDRP---DIRAG 330

Query: 210 FIVLADTGETQVF--CSKDFMDFPI-PSENTDFD---DIISLNSIVEQWTAPYAATSDVH 263
              + D  E  +     +  + + + P E   +    + +  ++I   W         + 
Sbjct: 331 NDEVWDRAEKALLEAVKEAGLSYKLNPGEGAFYGPKLEFVLKDAIGRNWQCGTLQVDFI- 389

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
                  LPE  R+ A        FY G             ADG K H V +    +G  
Sbjct: 390 -------LPE--RLGA--------FYIG-------------ADGHKHHPVMLHRAILGTF 419

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  ++ GK  +W   +AP +++++ I            +I   L + G  V  D
Sbjct: 420 ERFIGILIENYAGKFPVW---LAPTQLAILTITNE---ADGYATEISNILKEQGVRVKTD 473

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              E+I  +  +      P+  IVG   V+   V +++  +  +E  SLE+ 
Sbjct: 474 LTNEKISYKIRLHSSNKVPILWIVGKNEVTSKTVSVRNLGSERQESFSLEKA 525


>gi|326802012|ref|YP_004319831.1| prolyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326552776|gb|ADZ81161.1| Prolyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 490

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 10/192 (5%)

Query: 247 SIVEQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +  E+W A P        NE+   +L     E      + ++ G   + G  ++      
Sbjct: 195 TFAEEWMALPVVRGRKTENERFAGALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVK 254

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++  
Sbjct: 255 FTSKEGKLDYVWATSWGV-STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPIYKTEEES 313

Query: 362 RDA---CEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           R      + + A+L + G  V +DD   Q  G +FA  +L G P++V +G++ + +  VE
Sbjct: 314 RQIGALADNLIAQLKQKGISVKYDDRDTQRPGFKFAEWELKGVPVRVAIGARDLQNGTVE 373

Query: 418 IKHRLTGIREDM 429
           +  R T  +E +
Sbjct: 374 LARRDTQSKETV 385



 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           + D  G+ ++    + ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R
Sbjct: 98  KNDGNGQIIVDEEAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPILVNQWANVVRWEMR 157

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            R   +R+ EFL ++ ++   T E +     +M   Y
Sbjct: 158 TRL-FLRTAEFLWQEGHTAHATSEEAVKETERMLNVY 193


>gi|163788630|ref|ZP_02183075.1| N-acetylmuramic acid-6-phosphate etherase [Flavobacteriales
           bacterium ALC-1]
 gi|159875867|gb|EDP69926.1| N-acetylmuramic acid-6-phosphate etherase [Flavobacteriales
           bacterium ALC-1]
          Length = 646

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 172/460 (37%), Gaps = 69/460 (15%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIR 58
           P+  E+  H  +L       H K                G+  WLP G    + +   ++
Sbjct: 222 PKQKELTEHLHLLEEAKKRDHRKLGKELELFTFSQKVGQGLPLWLPKGAALRERLENFLK 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTD 116
             Q + G   +  P +   +L+V SG Y  YG++  +     + D+  +  P +     +
Sbjct: 282 AAQKKAGYEMVVTPHIGQKELYVTSGHYAKYGEDSFQPIKTPKEDEEFLLKPMNCPHHCE 341

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+ +   SY+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + 
Sbjct: 342 IYNNKPYSYKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDAEFK 400

Query: 176 KMFVSYLRIFHRLGLK----SIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMD 229
           ++    L +F  LG +     + +R    P    GD  H         E  +        
Sbjct: 401 EVIDLVLYVFGSLGFEDFTAQVSLRDPESPDKYIGDEEH-----WKKAEDAIL------- 448

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 N   D    LN +VE   A  Y    D     + D+L        R  ++G I 
Sbjct: 449 ------NAAIDK--GLNYVVETGEAAFYGPKLDF---MVRDAL-------GRQWQLGTI- 489

Query: 289 YFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                Y+LP     T+KG+D + H  V +     G+M    A++     G   +W   + 
Sbjct: 490 --QVDYTLPERFDLTYKGSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLW---LM 544

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +  +I+I    +      EK+   L         D+  E +G +   A++  FP  +I
Sbjct: 545 PEQAIIISIS---EKYEKYAEKVLNLLENDEIRALADNRNETVGKKIREAEMQKFPFMII 601

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           VG +   D+ + ++         +++++ +N    R + +
Sbjct: 602 VGEQEAQDNTITVRQHGGEDLGTITVKDFVNIVKDRINKS 641


>gi|88657649|ref|YP_506841.1| threonyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123750088|sp|Q2GI92|SYT_EHRCR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88599106|gb|ABD44575.1| threonyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 633

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 173/445 (38%), Gaps = 55/445 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R++  L +   N  +AE   H+ +   L    I   + G   W   G      +   IR+
Sbjct: 223 RNEEELKLYLNNLIEAEKRDHRKIGRELELFHIQNEACGQIFWHTKGWTIYRIIENYIRK 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G IE+  P L + +LW +SG +D + + M  L++  DK +   P +      IF 
Sbjct: 283 KLENNGYIEVKTPILLNKELWEKSGHWDKFRENMF-LSEAEDKTLAIKPMNCPCHIQIFN 341

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S I+SYR+LP    +     R E      G+MR R F   DA+ F    E    S    F
Sbjct: 342 SKIRSYRDLPIRMAEFGTCHRYEASGALHGLMRVRGFTQDDAHIF--CTESQITSEALKF 399

Query: 179 VSYL-RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PS 234
            + L  I+   G   I ++    P     S E   + D  E  +  S +  +      P 
Sbjct: 400 CNLLIEIYKDFGFTDILVKFSDRPKNRAGSDE---IWDKAEAALKKSVEVANLSYVLNPG 456

Query: 235 ENTDFDDIISL---NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +   +   +     ++I  +W         V        LPE  R+ A        +Y G
Sbjct: 457 DGAFYGPKLEFTLKDAIGREWQCGTLQMDFV--------LPE--RLGA--------YYIG 498

Query: 292 TKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           +             DGK H+ V +    +G       ++   H GK  +W   +AP ++S
Sbjct: 499 S-------------DGKKHHPVMLHRAILGTFERFIGILIEHHSGKFPMW---LAPIQLS 542

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ I + D +      KI A    +  ++  D   E+I  +         P+  IVG K 
Sbjct: 543 ILTI-SEDSINYANSLKIKAEEHNIRVEL--DTTNEKINYKIRNHIHKKVPVFWIVGKKE 599

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVI 435
           V ++ V I++  +  +  M +++ +
Sbjct: 600 VEENSVSIRYLESNKQHVMPIDKAL 624


>gi|330994118|ref|ZP_08318046.1| Threonyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329758585|gb|EGG75101.1| Threonyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 644

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 152/418 (36%), Gaps = 58/418 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W P G +    +   +R  Q+R G  E+  P L    LW  SG +D Y +
Sbjct: 256 IQEEAVGQIFWHPKGWRLYSVLQDYMRRAQDRNGYQEVRTPQLVDRALWEASGHWDKYRE 315

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M +   +  DK +   P +      IFR  ++SYR LP    +     R E      G+
Sbjct: 316 HMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSYRELPLRMAEFGACHRYEPSGALHGI 375

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   DA+ F    E         FV  L  ++  LG +   ++    P    G D
Sbjct: 376 MRVRGFTQDDAHIF--CTEDQIADETARFVRMLADVYQDLGFEHFRVKFADRPEQRAGDD 433

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFD---DIISLNSIVEQWTAPYAAT 259
            +       D  E  +  + D         P E   +    + +  ++I   W       
Sbjct: 434 ATW------DRAENALKVACDMAGVTYEHNPGEGAFYGPKLEFVLRDAIGRDWQCGTLQV 487

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             V        LPE                        + A++ G D   H   M    I
Sbjct: 488 DYV--------LPER-----------------------LDASYVGEDSARHRPVMLHRAI 516

Query: 320 -GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G+      ++   H G+  +W   +AP ++ + +I        D  +++  RL   G  
Sbjct: 517 LGSFERFLGILIEQHAGRFPLW---LAPVQVVVASIVTD---AADYAQQVADRLRAAGLV 570

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           V  D   E+I ++     L   P+ ++VG K   ++ V ++      +E + L+E ++
Sbjct: 571 VEADLRNEKINAKIREHSLARVPVILVVGRKEAEENTVAMRRLGGKAQEVLPLDEAVS 628


>gi|325854993|ref|ZP_08171709.1| proline--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325483971|gb|EGC86911.1| proline--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 493

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 87/161 (54%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++++I I   ++  ++   K   +  +L ++G  V +DD   ++ G +FA 
Sbjct: 295 VLPPRIAPIQVAIIPIFKGEEQLKEITAKLQPVIDQLRELGITVKYDDSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + D+ +E+  R T  +E++S + ++
Sbjct: 355 YELKGVPVRLAMGGRDLQDNTIEVMRRDTLEKENVSFDGIV 395


>gi|297569216|ref|YP_003690560.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925131|gb|ADH85941.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 646

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 149/394 (37%), Gaps = 45/394 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q   G+  W P G      +    R+E  R G   +S P +   +LW  SG  D YG+ M
Sbjct: 260 QIGPGLILWQPKGALLRRLIEDYWRDEHYRHGYELLSTPHIARRELWQTSGHLDFYGENM 319

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               +  +      P +      I+++  +SYR  P  + ++   +R E      G+MR 
Sbjct: 320 YSPMEVEEVQYQLKPMNCPFHIAIYKTRKRSYREFPLRWCELGTVYRFEKTGALHGLMRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE 209
           R F   DA+ F   P+  +    ++    L I    G     +   + P   +G D + +
Sbjct: 380 RGFTQDDAHIF-CRPDHLEEEIFRILDLNLHILQAFGFADYDIYLSTRPEKYVGSDENWD 438

Query: 210 FIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 T   Q    K  + + + P E   +   I +                    K+ 
Sbjct: 439 ----RSTAALQAALEKKGLSYSLDPGEGVFYGPKIDI--------------------KIK 474

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAA 327
           D L    + S   ++    F    ++ L     + G DG++H  + +    +G++     
Sbjct: 475 DVLGRAWQCSTIQVD----FNLPERFEL----GYTGEDGREHRPIMIHRALMGSLERFFG 526

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+   + G   +W   +AP +  + NI        D  E++YA L + G  V  D   E+
Sbjct: 527 VLIEHYAGAFPLW---LAPVQARICNIT---DAQLDYGEEVYAALRRAGVRVEKDLRNEK 580

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +   A L   P  +IVG K  ++  V ++ R
Sbjct: 581 LNYKIREAQLQKIPYMLIVGDKEAAEGTVTVRQR 614


>gi|225025724|ref|ZP_03714916.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
 gi|224941505|gb|EEG22714.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
          Length = 635

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 165/414 (39%), Gaps = 55/414 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R E +  G  E+  P +     W +SG + +Y  
Sbjct: 257 LQDEAPGMVFWHPRGWTLWQTIEQHMRRELDAAGYREVKTPQILDKTFWEKSGHWANYKD 316

Query: 92  EMLRLA-DRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M   + ++ D A+  +  P H      IF   ++SYR+LP    +     R+E      
Sbjct: 317 NMFTTSSEKRDYAVKPMNCPGH----VQIFNHGLRSYRDLPMRLAEFGSCHRNEPSGALH 372

Query: 148 GVMRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           G+MR R F+  DA+ F   D   E ++ ++N++    ++I+ + G + + ++    P   
Sbjct: 373 GLMRVRGFVQDDAHIFCTEDQIAEETR-AFNQLV---MKIYKQFGFEHVSIKLSLRPEQR 428

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             + E    A+ G      +       +P E                  A Y    + H 
Sbjct: 429 AGTDETWDKAEQGLRDALTACGVQWEELPGEG-----------------AFYGPKVEYH- 470

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGA 321
             + D+L        R  + G I      + LP  + A +   D G+   V +    +G+
Sbjct: 471 --IKDAL-------GRSWQCGTI---QLDFVLPERLGAEYVTEDNGRARPVMLHRAILGS 518

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +     ++   H G   +W   +AP ++ ++NI        D C ++  +L   G     
Sbjct: 519 LERFIGILIEEHAGSFPLW---LAPVQMVVMNITEKQA---DYCLEVVNKLKAAGLRAEA 572

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D   E+IG +      + +P QV+VG K + + +V ++ +   +   M +EE I
Sbjct: 573 DLRNEKIGYKIRDNSQMRYPYQVVVGDKEMENGQVAVRRKGEDLG-SMQIEEFI 625


>gi|154502817|ref|ZP_02039877.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
 gi|153796700|gb|EDN79120.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
          Length = 642

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 172/448 (38%), Gaps = 74/448 (16%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK---------------GIYSWLPLGQKALDNVNAIIRE 59
           P+ AE+  +  ML       H K               G   +LP G    + +    RE
Sbjct: 222 PKKAELEEYLNMLEEAKKRDHRKLGKELGLFMMRDEGPGFPFFLPNGMVLKNVLLDYWRE 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIF 118
              + G +E+S P + S  LW  SG +D Y + M   + D  D A+   P +       +
Sbjct: 282 IHRKAGYVEISTPVMLSRHLWETSGHWDHYKENMYTTVIDEEDFAI--KPMNCPGGILAY 339

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +
Sbjct: 340 QAEPRSYRDLPIRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGV 398

Query: 178 FVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 ++   G K    +  R E   +G D   E    A  G                 
Sbjct: 399 AGLINEVYSLFGFKYHVELSTRPEDS-MGSDEDWEMATDALRGA---------------- 441

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-- 292
                DD+     + E   A Y    D H E   DS             +G  +  GT  
Sbjct: 442 ----LDDLGLPYVVNEGDGAFYGPKIDFHLE---DS-------------IGRTWQCGTIQ 481

Query: 293 -KYSLPM--SATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPF 347
             + LP+     + GADG+ H  + +     G++ R +  +IE         +P  +AP 
Sbjct: 482 LDFQLPLRFELEYTGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGA----FPTWLAPV 537

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++ ++ I   D+   +  + +  +L+  G     D   E+IG +   A +   P  ++VG
Sbjct: 538 QVKVLPIS--DKYL-EYGQSVLDQLNAAGIRAEIDTRAEKIGYKIREAQMKKIPYMLVVG 594

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +K   + KV ++ R  G      LEE I
Sbjct: 595 AKEEEEKKVSVRSRFAGDEGQKGLEEFI 622


>gi|148555657|ref|YP_001263239.1| threonyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|148500847|gb|ABQ69101.1| threonyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 690

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 156/412 (37%), Gaps = 63/412 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   ++G   W P G +    + A +R + +  G +E+  P L  A  W +SG +  Y +
Sbjct: 287 LQSEAQGSVFWHPKGFRLWRALEAYMRRKLDAAGYVEVKTPQLMDARQWEQSGHWGKYRE 346

Query: 92  EMLRLADRNDKAMIYGPT---HEEVMT----------DIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D    A   GP      E+M            IFR  IKSYR+LP    +    
Sbjct: 347 NMFVVPDEIPNAEEEGPVLSGESELMALKPMNCPAHVLIFRQGIKSYRDLPIRMAEFGCC 406

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMR 196
            R+E      G+MR R+F   DA+ F    E    +  K F   L   +R LG +   ++
Sbjct: 407 HRNEPHGALHGIMRVRQFTQDDAHIF--VREDQLIAEIKDFCDLLDAVYRDLGFEQYAIK 464

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WT- 253
               P                  + F S++  D    +E T  D + +     E   W  
Sbjct: 465 LALRP-----------------EKRFGSEEMWD---KAEQTLRDAVAASGRATEAFGWEE 504

Query: 254 -----APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A YA   + H   L D++        R  +VG I    T     + A++ G DG+
Sbjct: 505 LEGEGAFYAPKLEFH---LTDAI-------GRTWQVGTI-QADTVLPERLDASYVGEDGE 553

Query: 309 DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M    I G       ++   H G+  +W   +AP +  +  I +      D   +
Sbjct: 554 RHRPVMLHRAILGTFERFIGILIEHHAGRFPLW---LAPVQAVVATIVSD---ADDYARE 607

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           + A+L+  G  V  D   E+I  +     L   P  ++VG +   +  V I+
Sbjct: 608 VEAKLAAAGLRVESDLRNEKINYKVREHSLAKVPALLVVGKREAEEGTVAIR 659


>gi|146295981|ref|YP_001179752.1| threonyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409557|gb|ABP66561.1| Ser-tRNA(Thr) hydrolase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 639

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 155/399 (38%), Gaps = 47/399 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   +LP G    + +    REE  + G  E+  P + + DLWV+SG +D Y K
Sbjct: 258 IFEQGPGFPFFLPKGMIIRNILEDFWREEHKKRGYQEIKTPIMLTKDLWVQSGHWDHY-K 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D+     P +      +++    SYR LP    ++ L  R EL     G+M
Sbjct: 317 ENMYFTKIDDQEFAIKPMNCPGSILVYKRKSHSYRELPERLCELGLVHRHELSGVLHGLM 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F + P   K     +       +   G K    +  R E+  +G D  
Sbjct: 377 RVRCFTQDDAHIF-MLPSQIKDEIKGVIDLIDYFYSVFGFKYHVELSTRPENS-MGTD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEK 266
            E   +A+T   +                    + + +N  I E   A Y    D H E 
Sbjct: 433 -EQWNMAETALKEAL------------------EEVGINYKINEGDGAFYGPKIDFHLE- 472

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
             DSL    + +   ++    F    ++ L     + G DG  H  V +     G++   
Sbjct: 473 --DSLKRTWQCATIQLD----FQMPERFDL----YYIGEDGAKHRPVMLHRVVFGSIERF 522

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++     G   +W   +AP +I +I +  +     D   KI   L + G  V  D   
Sbjct: 523 IAILTEHFAGAFPVW---LAPIQIRVIPVSDN---FNDYAAKISQTLKENGFRVEEDFRS 576

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E +G +   A L   P  VIVG K   ++ + ++ R  G
Sbjct: 577 ETVGYKIRDAQLQKIPYMVIVGEKERRENTIAVRDRKKG 615


>gi|71032103|ref|XP_765693.1| prolyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68352650|gb|EAN33410.1| prolyl-tRNA synthetase, putative [Theileria parva]
          Length = 683

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 161/420 (38%), Gaps = 69/420 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           ++++R+ MI  +   G Y +LP      +  N    ++  + G      P   + + L  
Sbjct: 215 QVIVRSEMIEYYDISGCYIFLPASYFIWEIFNEWFNKQIKQRGVDNCYFPMFVTKERLEA 274

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D      +   PT E +M   F   I+SYR+LP    Q   
Sbjct: 275 EKTHLEGFSPEVAWVTRNGDVDFPDPIAIRPTSETIMYPEFSKWIRSYRDLPLKLNQWNS 334

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +RSREFL ++ ++   T + +  +  +M   Y + +      S+P+  
Sbjct: 335 VVRWEFKQPTPFIRSREFLWQEGHTAHSTEKEALDTVYEMLDLYSKFYEEY--LSVPV-- 390

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G                           + SEN  F                  
Sbjct: 391 ----IKG---------------------------VKSENEKF------------------ 401

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                   K+  SL      + RG++       GT +S      ++  +G+   V   S+
Sbjct: 402 -----AGSKMTTSLEAFVPANGRGVQAATSHLLGTTFSDMFDIKYEDEEGEKRKVHQTSW 456

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKV 375
           G    R +  +I    D +G++ P  VA  ++ ++ I  K  DQV     E +Y  L++ 
Sbjct: 457 GFTT-RSIGIMIMVHGDDRGLVVPPRVAKTQVVIVPILTKTADQVISRVNE-LYKLLTES 514

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  G   G +F   +L G PL++ VG+K V ++ V +  R    + D+ LE +
Sbjct: 515 GFRVKLDDRRGYTPGFKFNHWELRGVPLRLEVGAKDVENNTVRLVRRDNFAKADVPLENL 574


>gi|255323684|ref|ZP_05364814.1| threonyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255299398|gb|EET78685.1| threonyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 606

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 166/419 (39%), Gaps = 61/419 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  I+ +     G   +  P L  AD+W +SG Y +Y KE +   
Sbjct: 232 GLPIWLPNGGRLRSKLEQILYKAHRDRGYEPVRGPELLKADVWKKSGHYANY-KENMYFT 290

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      +++S I+SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 291 TIDEAEYGIKPMNCVGHIKVYQSDIRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFA 350

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             D++ F   P   K +  ++     +I    G     M   + P   IGGD        
Sbjct: 351 QDDSHIF-CMPSQIKENILEILKFAGKIMENFGF-HYEMEISTKPAKAIGGD-------- 400

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +  ET     K+ +D     EN           I E   A Y    D+   K+ D+L  
Sbjct: 401 -EIWETATKALKEALD-----ENG------FKYGIDEGGGAFYGPKIDI---KITDAL-- 443

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--------HYVQMGSYGIGAMRVV 325
                 R  + G I      ++LP        D  +        H   +GS+     R +
Sbjct: 444 -----KRKWQCGTI---QVDFNLPERFDLGYIDANNERQQPVMLHRALLGSF----ERFI 491

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             +IE  H G  +  P  VAP ++ ++ I  AH     D  + +   L K+G D      
Sbjct: 492 GILIE--HTGGEL--PFFVAPTQVVIVPISDAH----LDYAKTVAKELRKIGVDSEIASK 543

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E +  +   A+    P+  ++G   V++S + ++ R T  ++DM L+E +     + +
Sbjct: 544 NESLNKRIRTAEKQRVPMIAVLGDNEVANSAIALRDRTTREQKDMKLDEFVGLLKSKLA 602


>gi|228995766|ref|ZP_04155427.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
 gi|228764010|gb|EEM12896.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
          Length = 476

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 138/343 (40%), Gaps = 72/343 (20%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRS 152
           +LA+R    +   PT E +  + F   ++SY +LP  + Q    +++    RP    +R+
Sbjct: 103 KLAER----LCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---FLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQEETLNILNLYAS----------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    FC +D++  P I  + T+ +             A Y   S +H+       
Sbjct: 187 ---------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD------- 222

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I  
Sbjct: 223 -------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMV 274

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +
Sbjct: 275 HSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATQLQGRIQKVA-RVKIDASNKTPGWK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 334 FNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQL 376


>gi|323466103|gb|ADX69790.1| Threonyl-tRNA synthetase 1 [Lactobacillus helveticus H10]
          Length = 661

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 166/407 (40%), Gaps = 43/407 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 277 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 336

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      IF+ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VALDQVQTEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 442 PKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 499 ETMSTIQLD----FMLPDRFGL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 550

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      EK+ A L+K G  V  DD  E++G +
Sbjct: 551 KGAFPTW---LAPVQAEIIPVNNEAHGEY----AEKVRAELAKRGFRVEVDDRNEKMGYK 603

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM--SLEEVIN 436
              +     P  +++G + +   KV +  R  G  E++  SL++ IN
Sbjct: 604 IRESQTQKVPYTLVLGDEEMKSGKVNV--RCYGTDEEISKSLDDFIN 648


>gi|83594816|ref|YP_428568.1| threonyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123753041|sp|Q2RNL4|SYT_RHORT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83577730|gb|ABC24281.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 643

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 155/412 (37%), Gaps = 50/412 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + ++G   W P G      +   +R   +  G +E++ P L    LW +SG ++ + +
Sbjct: 256 LQEEAQGAVFWHPKGWTVYRTLQNYMRRRLDLAGYVEVNTPMLVDRALWEKSGHWEKFRQ 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +++  DK +   P +      IF+  IKSYR+LP    +     R+E      G+M
Sbjct: 316 NMF-ISEAEDKLLAMKPMNCPCHIQIFKQGIKSYRDLPLRMAEFGACHRNEASGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHE 209
           R R F+  DA+ F    E    S  + F   L+  +R LG   I ++    P        
Sbjct: 375 RVRAFVQDDAHIF--CTEDQIVSETQAFCDLLKSVYRDLGFTEIKVKFSDRP-------- 424

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             V A + ET               E TD   +        +WT         +  KL  
Sbjct: 425 -EVRAGSDETWDKAEAAL------REATDAAGL--------EWTL-NPGEGAFYGPKLEF 468

Query: 270 SLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
            L +          +G  +  GT    + LP  + A + G DG  H   M    I G   
Sbjct: 469 VLRDA---------IGRDWQCGTLQVDFVLPERLGADYVGEDGDKHRPVMLHRAILGTFE 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++  +  G+   W   +AP ++ +  I +      D    + A L   G     D 
Sbjct: 520 RFMGILIENCAGRFPFW---LAPVQVVVATITSD---ADDYARTVLAALKAKGLRAVADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E+I  +     L   P+ ++VG K      V ++      +E ++L+E I
Sbjct: 574 RNEKINYKVREHSLAKVPVMLVVGRKEAETGGVALRRLGGQSQEVLALDEAI 625


>gi|229107523|ref|ZP_04237275.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
 gi|228675915|gb|EEL31008.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
          Length = 476

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/406 (20%), Positives = 164/406 (40%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++                       H  G +S   +AE+  I    +  
Sbjct: 153 LRTTEFLWQEGHTI----------------------HETGEES---QAETLNILNLYAS- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC ++++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EEYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPLQVVIVPIAQHKEGVLEKATELQGRIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|206968558|ref|ZP_03229514.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206737478|gb|EDZ54625.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 476

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 159/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y+                           
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYVS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|167042805|gb|ABZ07523.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_ANIW137I15]
          Length = 627

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 171/436 (39%), Gaps = 65/436 (14%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           +IH Q   G+  WLP G      +     +E  R G   + +P L  + L+  SG YD Y
Sbjct: 239 LIHEQAGSGLVYWLPHGAVLRKVIERFWEDEHVRRGYELVVIPHLVHSRLFRTSGHYDFY 298

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M  L + + +  +  P +      I+++  +SYR+LP  + ++   +R+E      G
Sbjct: 299 KENMFTL-EVDGEEYVAKPMNCPGHILIYQNERRSYRDLPIRYAEMGTVYRNERSGVLHG 357

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           ++R R F   DA+ F  TPE                        +P     G I G L  
Sbjct: 358 MLRVRGFTQDDAHIF-CTPE-----------------------QLP-----GEILGVLDM 388

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD-----IISLNSIVEQWTAPYAATSDVH 263
              +LA  G  +        D   P +    DD       SL   +++ + PY       
Sbjct: 389 TLFMLATFGFERFEIELSVRDPAHPEKYAGSDDEWKAAEASLVQALDERSLPYRRCEGEA 448

Query: 264 -------NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--GADGKDHYVQM 314
                  + K+ D+L        RG +   I +    ++LP     K  GADG  H   M
Sbjct: 449 VFYGPKIDVKIVDAL-------GRGWQASTIQF---DFNLPRRFDLKYVGADGDFHTPYM 498

Query: 315 GSYG-IGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                +G++ R V A+IE +  G   +W   ++P ++ ++ I   +    D   ++ A L
Sbjct: 499 VHRALLGSLERFVGALIEHTA-GAFPLW---LSPVQVKVLPITERNH---DHARRVAASL 551

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G  V  DD  E++G +     L   P  +++G +     +V ++ R  G    M L+
Sbjct: 552 KESGLRVDVDDRNEKLGYKIRQGRLERTPYLLVIGDREQESQQVAVRDRTEGNLGAMGLD 611

Query: 433 EVINYASHRFSNNRPV 448
             ++      +   P 
Sbjct: 612 AFLDRVQPEMAPRTPA 627


>gi|296133381|ref|YP_003640628.1| threonyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031959|gb|ADG82727.1| threonyl-tRNA synthetase [Thermincola potens JR]
          Length = 637

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 158/404 (39%), Gaps = 57/404 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   + P G    + +    RE+  + G  E+  P + +  LW +SG +D Y +
Sbjct: 257 IQEEGPGFPFFHPKGMIVRNELEKFWREQHEKAGYQEIRTPIILNRSLWEQSGHWDHY-R 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D      P +      ++++ + SYR+ P    ++ L  R E+     G+M
Sbjct: 316 ENMYFTKIDDIDFAVKPMNCPGSILVYKTRLHSYRDFPIRLAELGLVHRHEMSGVLHGLM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNK---MFVSYLRIF---HRLGLKSIPMRAESGPIGG 204
           R R F   DA+ F + P   K    K   +  ++ ++F   + + L + P +A    +G 
Sbjct: 376 RVRCFTQDDAHIF-MLPSQIKDEIIKVIDLIDNFYKVFGFKYHVELSTKPEKA----MGS 430

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D   E   LA     +   +K  MDF I   +  F                Y    D H 
Sbjct: 431 D---EIWDLATNALKEALAAKG-MDFKINEGDGAF----------------YGPKIDFH- 469

Query: 265 EKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG 320
             L D L        R  + G I   F    K+ L    T+ G DG+ H  V +     G
Sbjct: 470 --LMDCL-------GRTWQCGTIQLDFLMPEKFDL----TYVGEDGQKHRPVMIHRVVFG 516

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++     G   +W   ++P +  ++ +       +   EK+   L + G  V 
Sbjct: 517 SIERFIGILIEHFAGALPVW---LSPVQAKIMTVTDR---SKQYAEKVADWLKEKGVRVE 570

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            D   E+IG +   A +   P  ++VG K + +  V ++ R  G
Sbjct: 571 VDARNEKIGYKIREAQVEKVPYMLVVGDKEMENGTVAVRKRGEG 614


>gi|216264165|ref|ZP_03436157.1| prolyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215980638|gb|EEC21445.1| prolyl-tRNA synthetase [Borrelia burgdorferi 156a]
          Length = 488

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMGHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|114566616|ref|YP_753770.1| threonyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318333|sp|Q0AY05|SYT_SYNWW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114337551|gb|ABI68399.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 635

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 152/395 (38%), Gaps = 51/395 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRL 96
           G   +LP G    + +    REE  + G  E+  P + S +LW  SG +D Y   M    
Sbjct: 261 GFPFFLPKGMVLRNELENFWREEHRKAGYQEIRTPIILSRELWERSGHWDHYKDNMYFTT 320

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            D  D A+   P +      +++ ++ SY+ LP    ++ L  R E+     G+MR R F
Sbjct: 321 IDEGDYAI--KPMNCPGGLLVYKQNLHSYKELPLRMGEMGLVHRHEMSGVLHGLMRVRAF 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKM-----FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              DA+ F L  +        M     F S     + + L + P +A    +G D   E 
Sbjct: 379 TQDDAHIFMLPEQIIDEIKGVMDLVDRFYSLFGFPYHVELSTKPEKA----MGSD---EI 431

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             +A     +    +  M++ +   +  F                Y    D H   L DS
Sbjct: 432 WEVATNALIKALEERG-MEYKVNEGDGAF----------------YGPKIDFH---LQDS 471

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVI 329
           L    +     ++    F    K+ L    T+ G DG  H   M    I G++     ++
Sbjct: 472 LDRTWQCGTIQLD----FQMPEKFDL----TYVGEDGGKHRPVMIHRVIYGSIERFIGIL 523

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   +W   +AP ++ ++ I    Q  +D   ++ A L + G  V  D   E+IG
Sbjct: 524 TEHFGGAFPLW---LAPVQVRVLPIT---QRSQDYARQVVAELEQAGIRVEADFRSEKIG 577

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +     L   P  +++G +   +  V ++HR  G
Sbjct: 578 YKIREGQLQKIPYLLVLGDREAEEGTVSVRHRKEG 612


>gi|42520791|ref|NP_966706.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|73919843|sp|Q73GH6|SYT_WOLPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|42410531|gb|AAS14640.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 633

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 161/411 (39%), Gaps = 51/411 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W   G    + + + IR++    G  E+  P L S +LW  SG +D + +
Sbjct: 253 IQEEAVGQVFWHEQGYILYNVLESYIRKKLINNGYFEVKTPILVSKELWERSGHWDKFRE 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + +  +K +   P +      IF SH +SYR+LP    +     R+E      G+M
Sbjct: 313 NMFIVDESENKKLAIKPMNCPCHVQIFNSHTRSYRDLPIRMAEFGTCHRNESSGSLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHE 209
           R R F   DA+ F +  E   +S    F   L+ ++  LG   I ++    P   D+   
Sbjct: 373 RVRGFTQDDAHIFCM--EEQVNSETIKFCDLLKEVYSELGFNEISVKFSDRP---DIRAG 427

Query: 210 FIVLADTGETQVF--CSKDFMDFPI-PSENTDFD---DIISLNSIVEQWTAPYAATSDVH 263
              + D  E  +     +  + + + P E   +    + +  ++I   W         + 
Sbjct: 428 NDEVWDRAEKALLEAVKEAGLSYKLNPGEGAFYGPKLEFVLKDAIGRNWQCGTLQVDFI- 486

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
                  LPE  R+ A        FY G             ADG K H V +    +G  
Sbjct: 487 -------LPE--RLGA--------FYIG-------------ADGHKHHPVMLHRAILGTF 516

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  ++ GK  +W   +AP +++++ I            +I   L + G  V  D
Sbjct: 517 ERFIGILIENYAGKFPVW---LAPTQLAILTITNE---ADGYATEISNILKEQGVRVKTD 570

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
              E+I  +  +      P+  IVG   V+   V +++  +  +E  SLE+
Sbjct: 571 LTNEKISYKIRLHSSNKVPILWIVGKNEVTSKTVSVRNLGSERQESFSLEK 621


>gi|302391179|ref|YP_003826999.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203256|gb|ADL11934.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Acetohalobium
           arabaticum DSM 5501]
          Length = 639

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 165/420 (39%), Gaps = 59/420 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      KL L +  +H   KG   + P G    + +    +EE  + G  E+  P + 
Sbjct: 246 RDHRKLGQKLDLFS--LHDEGKGFPFFHPKGMVVRNELIDFWKEEHRQAGYKEIKTPVIL 303

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + DLW +SG +D Y KE +   + + +     P +      +++  ++SYR+LP    ++
Sbjct: 304 NQDLWKQSGHWDHY-KEDMYFTEIDKEPHAVKPMNCPGGILVYKDKMRSYRDLPIRMGEL 362

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF------HRL 188
            L  R E      G+MR R F   DA+ F L P   +     +     RI+      +R+
Sbjct: 363 GLVHRHERSGTLHGLMRVRNFTQDDAHIFCL-PSQIEEELTGVIKLVDRIYAPFGFNYRV 421

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            L + P +A    +G D       L D        + D +   I + + D+        +
Sbjct: 422 ELSTKPDKA----MGSD------ELWDK-------ATDALREAIEANDLDY-------KV 457

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGA 305
            E   A Y    D H E              R  + G +   F    ++ L    T+ G 
Sbjct: 458 NEGDGAFYGPKIDFHLEDCL----------GRTWQCGTVQLDFQMPERFDL----TYVGQ 503

Query: 306 DGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG++H   M    I G++     ++   + G    W   +AP +  +I +   D +  D 
Sbjct: 504 DGEEHRPVMIHRAIFGSLERFMGILIEHYAGAFPTW---LAPIQTEVIPV-TDDHL--DY 557

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L+  G  V  D   E++G +   A +   P  +IVG   + D  V ++ R  G
Sbjct: 558 AYQVKEELADAGVRVEVDARQEKVGYKIREAQVQQVPYMLIVGDDEIEDKTVSVRDRREG 617


>gi|294789007|ref|ZP_06754247.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483109|gb|EFG30796.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 638

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 166/413 (40%), Gaps = 53/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R E    G  E+  P +     W +SG + +Y  
Sbjct: 256 LQDEAPGMVFWHPRGWALWQVIEQHMRHELTAAGYQEVKTPQVMDKTFWEKSGHWANYKD 315

Query: 92  EM-LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M L  +++ D A+  +  P H      IF   ++SYR+LP    +     R+E      
Sbjct: 316 NMFLTSSEKRDYAVKPMNCPGH----VQIFNHALRSYRDLPMRLAEFGSCHRNEPSGALH 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+MR R F+  DA+ F  T +       K  +  ++I+ + G +++ ++    P     S
Sbjct: 372 GLMRVRGFVQDDAHIF-CTEDQIAEETRKFNLLVMKIYQQFGFENVSIKLSLRPEKRAGS 430

Query: 208 HEFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            E    A+ G  +    C  ++ + P                      A Y    + H  
Sbjct: 431 DEIWDKAEQGLRDALTACGVEWEELPGEG-------------------AFYGPKVEYH-- 469

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGAM 322
            + D+L        R  + G I      + LP  + A +   D  K   V +    +G++
Sbjct: 470 -IKDAL-------GRSWQCGTI---QLDFVLPERLDAEYVTEDNNKARPVMLHRAILGSL 518

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++   H G   +W   +AP ++ ++NI +  Q    A  ++ A+L   G  V  D
Sbjct: 519 ERFIGILIEEHAGSFPLW---LAPVQMVVMNI-SEGQAAYAA--EVQAKLQAAGFRVDLD 572

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              E+IG +      + +P Q+ VG K +++ +V I+ +   +   +S+ E+I
Sbjct: 573 TRNEKIGYKIRDNSTMRYPYQLTVGDKEMANGQVSIRKKAENLG-SVSVNELI 624


>gi|228989573|ref|ZP_04149557.1| Prolyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
 gi|228770110|gb|EEM18690.1| Prolyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
          Length = 476

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 138/343 (40%), Gaps = 72/343 (20%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRS 152
           +LA+R    +   PT E +  + F   ++SY +LP  + Q    +++    RP    +R+
Sbjct: 103 KLAER----LCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---FLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQEETLNILNLYAS----------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    FC +D++  P I  + T+ +             A Y   S +H+       
Sbjct: 187 ---------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD------- 222

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I  
Sbjct: 223 -------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMV 274

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +
Sbjct: 275 HSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATQLQGRIQKVA-RVKIDASNKTPGWK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 334 FNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQL 376


>gi|221320079|ref|ZP_03601373.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
          Length = 643

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y + M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKEISLGYEHVYTPVLGSKELYETSGHWDHYQEGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMIYKQDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFIRTVRLIQDVYEDFGLSDYTFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   +  D I  +    E   A Y    DV   ++  ++ + 
Sbjct: 429 PEDTEKYFDDDEMWNKAQSMLKEAMDEIGHDYYEAEGEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYIGEDGKQHRPVVIHRGVVSTMERFVAFLIE-E 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL   G  V  D   E+IG + 
Sbjct: 537 HKGALPTW---LAPVQFQVIPVSP--AVHLDYAKKVQERLQCEGLRVEVDSRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E +SL+E +  A
Sbjct: 592 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQNSETISLDEFVKKA 637


>gi|75761526|ref|ZP_00741486.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490981|gb|EAO54237.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 503

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 63  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 122

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 123 VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 179

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 180 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 213

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 214 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 249

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 250 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 298

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 299 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 357

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 358 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 403


>gi|332184284|gb|AEE26538.1| Threonyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 634

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 147/382 (38%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWEKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LLPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G K   V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGDKQVPVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +APF+++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPFQVAVMGISNNQD---DYCKEVFTMLEKNGIRTKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|228963504|ref|ZP_04124661.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228796198|gb|EEM43649.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 476

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  ITHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|307128623|ref|YP_003880653.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
 gi|306483085|gb|ADM89955.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
          Length = 489

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 141/350 (40%), Gaps = 76/350 (21%)

Query: 96  LADRNDK---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           + D++ K    +I  PT E ++ + ++  I SYR+LP  F Q     R E R RF  +R+
Sbjct: 105 IVDKSSKLEDELIVRPTSETIIWNSYKRWINSYRDLPILFNQWANIIRWERRTRF-FLRT 163

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--DLSHEF 210
            EFL ++ ++   T + + +   K+   Y  +       +IP+      I G    S +F
Sbjct: 164 SEFLWQEGHTAHSTKKEAINQAKKILNIYTNVLE--NFIAIPV------IQGIKTYSEKF 215

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                 G  + +C +  M                                          
Sbjct: 216 -----AGAEKTYCIESIMQ----------------------------------------- 229

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    + +++    + G  +S      +    G   YV   S+GI + R++ A+I 
Sbjct: 230 -------DGKSLQIATSHFLGQNFSKAFDVRYSTEKGNKEYVWATSWGI-STRLIGAIIM 281

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKV----GCDVFWDD-M 384
           +  D  G+I P  +AP +I +I + K  +Q+  +  EK+   L K     G ++ +D  +
Sbjct: 282 THSDDNGLILPPKIAPIQIVIIPVYKTQEQL--NLIEKLVFPLKKFLEKRGINIKYDKRI 339

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               G +F   ++ G PL++ +G K +    VE+  R T  ++ +S+ ++
Sbjct: 340 YYTPGWKFNEYEIKGIPLRITIGKKDIDRGTVEVVRRDTLEKKYISINKL 389


>gi|238927112|ref|ZP_04658872.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885092|gb|EEQ48730.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 639

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 152/388 (39%), Gaps = 55/388 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    + +    RE   R G  E+S P + S  LW  SG +  Y +
Sbjct: 257 LHEEGPGFPFFHPNGMALRNALLDYWREVHRRYGYQEISTPVILSRKLWETSGHWFHY-R 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D+     P +      ++RS + SYR+LP    ++ L  R EL     G+ 
Sbjct: 316 ENMYTTEIDDEDYAIKPMNCPGCMLVYRSQLHSYRDLPLRLAELGLVHRHELSGALHGLF 375

Query: 151 RSREFLMKDAYSFDLTP---EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TP   EG       +F    R F       +  R E   +G D  
Sbjct: 376 RVRNFTQDDAHLF-VTPDQIEGEIQHTIDLFDEVYRTFGLTYKAELSTRPEDS-MGTD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   LA  G  +              +N   D +++     E   A Y    D H   L
Sbjct: 432 -EMWELATNGLQKAL------------DNRGLDYVVN-----EGDGAFYGPKIDFH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGA 321
            DS             +G  +  GT     SLP     T+ G DG+ H  V +     G+
Sbjct: 471 RDS-------------IGRTWQCGTIQLDMSLPEKFDLTYVGEDGEKHRPVMLHRVVYGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +     ++  ++ G   +W   +AP ++ ++ I        +  EK+Y ++   G  V  
Sbjct: 518 IERFIGILIENYAGAFPVW---MAPVQVRILPITERHA---EYAEKLYKKMFDCGIRVEI 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           D+  E+ G +   + +   P  ++VG +
Sbjct: 572 DERNEKTGYKIRESQVKKTPYTIVVGDQ 599


>gi|16079947|ref|NP_390773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310836|ref|ZP_03592683.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315161|ref|ZP_03596966.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221324361|ref|ZP_03605655.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|135175|sp|P18255|SYT1_BACSU RecName: Full=Threonyl-tRNA synthetase 1; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|143766|gb|AAA22864.1| (thrSv) (EC 6.1.1.3) [Bacillus subtilis]
 gi|1769999|emb|CAA99608.1| threonyl-tRNA-synthetase [Bacillus subtilis]
 gi|2293284|gb|AAC00362.1| threonine tRNA synthetase [Bacillus subtilis]
 gi|2635360|emb|CAB14855.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 643

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y + M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKEISLGYEHVYTPVLGSKELYETSGHWDHYQEGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      I++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNETLVLRPMNCPHHMMIYKQDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFIRTVRLIQDVYEDFGLSDYTFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   +  D I  +    E   A Y    DV   ++  ++ + 
Sbjct: 429 PEDTEKYFDDDEMWNKAQSMLKEAMDEIGHDYYEAEGEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYIGEDGKQHRPVVIHRGVVSTMERFVAFLIE-E 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL   G  V  D   E+IG + 
Sbjct: 537 HKGALPTW---LAPVQFQVIPVSP--AVHLDYAKKVQERLQCEGLRVEVDSRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E +SL+E +  A
Sbjct: 592 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQNSETISLDEFVKKA 637


>gi|288925105|ref|ZP_06419041.1| proline--tRNA ligase [Prevotella buccae D17]
 gi|288338295|gb|EFC76645.1| proline--tRNA ligase [Prevotella buccae D17]
          Length = 493

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLMGALIMVHSDDNGL 294

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I I K +DQ+       + +  RL  +G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVIIPITKGNDQLQAINAKLQPVIDRLRDMGISVKYDDADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +L G P+++++G + + D+ +EI  R T  +E +S + +
Sbjct: 355 YELKGVPVRLVMGGRDLEDNTIEIMRRDTLEKESVSFDGI 394



 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A R D+ +I  PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AARLDEELIIRPTSETIIWNTYKNWIHSWRDLPIMCNQWCNVMRWEMRTR-PFLRTSEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|311747151|ref|ZP_07720936.1| threonine--tRNA ligase [Algoriphagus sp. PR1]
 gi|126578860|gb|EAZ83024.1| threonine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 649

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 97/451 (21%), Positives = 174/451 (38%), Gaps = 63/451 (13%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      +L L T    +   G+  WLP G    + +   +++ Q++
Sbjct: 232 KEYLEMIEEAKKRDHRKLGRELELFT-FSEKVGMGLPLWLPKGTLLRERLVNFLKKAQDK 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  ++  P +    L+  SG Y+ YGK+  +        +  +  P +     +I++  
Sbjct: 291 AGYQQVITPHIGHKVLYETSGHYEKYGKDSFQPITTPHEGEEFLLKPMNCPHHCEIYKHK 350

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  + +    +R E      G+ R R F   DA+ F   P+  K  + K+   
Sbjct: 351 PHSYKELPIRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFIKVIDL 409

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG      +              I L D    + +   D              
Sbjct: 410 VLYVFKALGFDDFTAQ--------------ISLRDPENPEKYIGGD-------------- 441

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT 292
                    E W    +A  +   EK  D++ E    +  G +        +G  +  GT
Sbjct: 442 ---------EAWDKAESAIIEAAAEKGLDTVTELGEAAFYGPKLDFMVKDALGRKWQLGT 492

Query: 293 ---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y LP      + G+D + H  V +     G++    AV+     G   +W   ++P
Sbjct: 493 IQVDYQLPERFQLEYIGSDNQKHRPVMIHRAPFGSLERFVAVLIEHCAGNFPLW---LSP 549

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +I+++ I    +   D  E+I   L + G     D+  E+IG +   +++   P  +IV
Sbjct: 550 EQINILPI---SEKFVDYAEEIKGILDEAGISGSIDNRDEKIGRKIRDSEVKKVPFMLIV 606

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           G K   + K+ ++    G   + S EE INY
Sbjct: 607 GEKEKEERKLSVRKHGQGDLGNFSPEEFINY 637


>gi|157825427|ref|YP_001493147.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|166225491|sp|A8GML4|SYT_RICAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157799385|gb|ABV74639.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 635

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + +   RD      KL     + H  + ++G+  W   G    + +   IR++  +
Sbjct: 231 YLLMLEEAEKRD----HRKLGKELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ +  +M  L D +DK +   P +      IF+  IK
Sbjct: 287 NGYTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-DTDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF 386


>gi|325287208|ref|YP_004262998.1| Prolyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324322662|gb|ADY30127.1| Prolyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 492

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 141/339 (41%), Gaps = 65/339 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ + ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 116 EEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEG 174

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T   +     +M   Y                                AD  E  
Sbjct: 175 HTAHATENEAIAEAEQMMDVY--------------------------------ADFAE-- 200

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                DFM  P+         +  L +  E+    +A   + +     ++L ++     +
Sbjct: 201 -----DFMAVPV---------VKGLKTPSER----FAGAVETY---CIEALMQD----GK 235

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D  G++ 
Sbjct: 236 ALQAGTSHFLGQNFAKAFDVKFASKEGKQEHVWATSWGV-STRLMGALIMTHSDDNGLVL 294

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKI---YARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ ++ I   D+      EK+      L   G  V +D+    + G +F   +
Sbjct: 295 PPKLAPIQVVIVPIYKGDEQLDAISEKVNPLVKELRAKGISVKFDNRDTHKPGFKFNEYE 354

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L G P+++ +G + + +   E+  R T  +E ++ ++VI
Sbjct: 355 LKGVPVRIAIGKRDLENGTYEVARRDTLEKEIVNADDVI 393


>gi|145511956|ref|XP_001441900.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409161|emb|CAK74503.1| unnamed protein product [Paramecium tetraurelia]
          Length = 609

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 171/410 (41%), Gaps = 70/410 (17%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           +LP G K  + +  +IR+E    G  E+  P L + +LW +SG  D Y + +      +D
Sbjct: 248 FLPHGTKIYNKLIEMIRKEYRERGYQEVITPQLFNKELWKQSGHLDKYAENIYMT---HD 304

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
             M   P +      ++++   SY+ LP  F    +  R+E+     G+ R R+F   DA
Sbjct: 305 HQMGLKPMNCPGHCLLYKTLQHSYKELPIRFADFGVLHRNEVHGTLTGLTRVRKFTQDDA 364

Query: 161 YSFDLTPEGSKHSYNKM-FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
           + F    +  +   N + F+S  R++ R G    + +        GDL      + D  E
Sbjct: 365 HIFCTIEQIQQEIKNTLDFLS--RVYGRFGFTWELTLSTRPDKYIGDLQ-----IWDEAE 417

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV----HNEK-------- 266
            Q+          I   +T + +     +        Y    DV    HN+K        
Sbjct: 418 RQL---------RIALSDTQYTENPGDGAF-------YGPKIDVLIRDHNQKQHQCGTIQ 461

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           L  +LPE   ++          +   K+S P+           H   +GS     +  + 
Sbjct: 462 LDFNLPERFDLTYH--------HENDKFSRPVMI---------HRAILGS-----IERMM 499

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++   ++GK   WP  ++P ++ +I +    ++ +   ++IY +L K+G +V  +D  +
Sbjct: 500 AILTEQYNGK---WPFWLSPRQVMIIPV---SEISKQYAKEIYDQLYKLGFEVELEDTEQ 553

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-EDMSLEEVI 435
            +G +    ++L F   + VG+K    + V+++ R    + + M L+E I
Sbjct: 554 TLGKRIRKGEMLHFNYIITVGAKEQESNTVDVRERGDNHKHQSMKLDEFI 603


>gi|237801015|ref|ZP_04589476.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023872|gb|EGI03929.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 640

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 162/434 (37%), Gaps = 68/434 (15%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + Y L I +   RD      K+  R G+ H  + + G+  W P G      +   +R+ Q
Sbjct: 229 AAYILRIEEAEKRD----HRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQ 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW +SG + +Y   M      N    I  P +      +F   
Sbjct: 285 RENGYLEIKTPQVVDRSLWEKSGHWANYADNMFTTESENRDYAI-KPMNCPCHVQVFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR LP    +     R+E      G+MR R F   DA+ F    E    + +  F+ 
Sbjct: 344 LKSYRELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIK 401

Query: 181 Y-LRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---P 233
             L ++   G K I ++  + P   +G D       L D  E+ +  + D    P    P
Sbjct: 402 LTLDVYADFGFKDIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQP 455

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT- 292
            E   +   I  +                    L D L             G ++  GT 
Sbjct: 456 GEGAFYGPKIEFS--------------------LKDCL-------------GRVWQCGTL 482

Query: 293 --KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              ++LP  ++A +   D  + + V +    +G+      ++   ++G    W   +AP 
Sbjct: 483 QLDFNLPIRLNAEYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPT 539

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  ++NI        D   ++   L++ G     D   E+IG +     LL  P  +++G
Sbjct: 540 QAVIMNITDKQA---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIG 596

Query: 408 SKFVSDSKVEIKHR 421
            + V    V ++ R
Sbjct: 597 DREVEMQTVAVRTR 610


>gi|223039114|ref|ZP_03609404.1| threonyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222879475|gb|EEF14566.1| threonyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 606

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 165/419 (39%), Gaps = 61/419 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  I+ +     G   +  P L  AD+W +SG Y +Y KE +   
Sbjct: 232 GLPIWLPNGGRLRSKLEQILYKAHRDRGYEPVRGPELLKADVWKKSGHYANY-KENMYFT 290

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      +++S I+SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 291 TIDEAEYGIKPMNCVGHIKVYQSDIRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFA 350

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             D++ F   P   K +  ++     +I    G     M   + P   IGGD        
Sbjct: 351 QDDSHIF-CMPSQIKENILEILKFAGKIMENFGF-HYEMEISTKPAKAIGGD-------- 400

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +  ET     K+ +D     EN           I E   A Y    D+   K+ D+L  
Sbjct: 401 -EIWETATKALKEALD-----ENG------FKYGIDEGGGAFYGPKIDI---KITDAL-- 443

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--------HYVQMGSYGIGAMRVV 325
                 R  + G I      ++LP        D  +        H   +GS+     R +
Sbjct: 444 -----KRKWQCGTI---QVDFNLPERFDLGYIDANNERRQPVMLHRALLGSF----ERFI 491

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             +IE +    G   P  VAP ++ ++ I  AH     D  + +   L K+G D      
Sbjct: 492 GILIEHT----GGELPFFVAPTQVVIVPISDAH----LDYAKTVAKELRKIGVDSEIASK 543

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E +  +   A+    P+  ++G   V++S + ++ R T  ++DM L+E +     + +
Sbjct: 544 NESLNKRIRTAEKQRVPMIAVLGDNEVANSAIALRDRTTREQKDMKLDEFVGLLKSKLA 602


>gi|254166566|ref|ZP_04873420.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289596405|ref|YP_003483101.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197624176|gb|EDY36737.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534192|gb|ADD08539.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 465

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 153/394 (38%), Gaps = 73/394 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG++ WLP G + + N++   R+        E+  P L    +   E+   + +  E+  
Sbjct: 29  KGMHVWLPYGWQLMRNIDEYFRKVFTEHKHQEVYFPLLIPETEFKKEAEHIEGFENEVYW 88

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  D  ++  PT E  M  +F   I+S+ +LP   +QI   FR E +     +R
Sbjct: 89  VTHGGLDPLDVKLVVRPTSETAMYPMFSLWIRSHADLPLRIFQIVNVFRYETKQTRTFIR 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE    ++++   T E S+         + ++  +L L  + +R               
Sbjct: 149 VREVHFFESHTAHATAEESEEQIKDNIEIWKKVADKLALPYVLVR--------------- 193

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                    TD+D              P AA S +  E +  S 
Sbjct: 194 ------------------------KTDWDKF------------PGAAYS-IGAETIMPS- 215

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R +++  I  +   +S P    +   DG   YV   ++G+ + R+V A++  
Sbjct: 216 -------GRTLQIATIHQYFQNFSKPYGIEYLKEDGTHDYVHQTTFGM-SERLVGAIVGI 267

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDA--CEKIYARLSKVGCDVFWDDMGEQ 387
             D +G+I P  +AP ++ ++ I  K  + + ++A   E     L +V  D   D     
Sbjct: 268 HGDNRGLILPPEIAPIQVVIVPIVNKNKEGILQEARKIENELKELYRVHLD---DRDNYT 324

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G +F   +L G PL++ +G + +   +V +  R
Sbjct: 325 PGYKFYDWELKGVPLRLEIGPRDLEKGQVVLVRR 358


>gi|327311077|ref|YP_004337974.1| prolyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326947556|gb|AEA12662.1| prolyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 491

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 151/405 (37%), Gaps = 68/405 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG + W P G K   NV A+IRE  + TG  E+  P     + +  ES     +  E+  
Sbjct: 44  KGAFVWRPYGMKIRRNVEAVIRELHDSTGHQEVLFPVFIPYEFFSKESQHIRGFESEVFW 103

Query: 96  LADRNDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++   +    +I  PT E  M  +F+  I+ +R+LP   YQI   FR E +    ++R R
Sbjct: 104 VSKGGEAGERLILRPTSETAMMPMFKLWIQDHRDLPLAVYQIVSVFRAETKMTNPMIRVR 163

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           E  M K+A++     E ++         Y +IF ++    IP      P     +     
Sbjct: 164 EISMFKEAHTAHADREDAERQVRLAVDIYKKIFDKM---CIPYLISQRPEWDKFAGAVYT 220

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +A                        FD I+     ++  T  Y  T+       F  + 
Sbjct: 221 IA------------------------FDTILPDGRTLQIGTVHYLGTN-------FSKVF 249

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E   +   G    H +   T Y +                      I AM ++       
Sbjct: 250 EVTYLRPDG---SHEYVHTTSYGI------------------SERSIAAMLIIHG----- 283

Query: 333 HDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-G 389
            D  G   P ++AP +  ++ I      +   +A   +  RL   G  V  DD  ++  G
Sbjct: 284 -DDAGTTIPPALAPIQAVVVPIIYGEERKAVMEAASSVAERLRASGVRVHIDDREDKTPG 342

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +F   +L G PL++ +G + V    V +  R T  +  + L+E+
Sbjct: 343 WKFYYWELKGVPLRIEIGKRDVEQRSVVLARRDTLEKYSVGLDEL 387


>gi|58697298|ref|ZP_00372664.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536340|gb|EAL59818.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 580

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 221 RNKDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRK 280

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 281 KLINNGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           SH +SYR+LP    +     R+E      G+MR R F   DA+ F +  E   +S    F
Sbjct: 341 SHTRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM--EEQVNSETIKF 398

Query: 179 VSYLR-IFHRLGLKSIPMRAESGP 201
              L+ ++  LG   I ++    P
Sbjct: 399 CDLLKEVYSELGFNEISVKFSDRP 422


>gi|224533738|ref|ZP_03674326.1| prolyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|224513031|gb|EEF83394.1| prolyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 488

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|223888966|ref|ZP_03623557.1| prolyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|223885782|gb|EEF56881.1| prolyl-tRNA synthetase [Borrelia burgdorferi 64b]
          Length = 488

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|222110646|ref|YP_002552910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|254783520|sp|B9MHX8|SYT_DIAST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221730090|gb|ACM32910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 639

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 151/391 (38%), Gaps = 56/391 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y  
Sbjct: 255 IDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRDNGYQEVKGPQILDKTLWEKTGHWDKYRD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    +++ D A+   P +      IF+  IKSYR+LP  + +     R+E      G+
Sbjct: 315 NMFTTESEKRDYAL--KPMNCPGHILIFKQGIKSYRDLPLRYGEFGQCHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   D + F    E    +    + + L +++   G  +I  +  + P   IG D
Sbjct: 373 MRVRGFTQDDGHIF--CTEDHILAECTAYTALLQKVYKNFGFHNIIYKVATRPEARIGSD 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S       D  E  +  S       + +   +F+             AP       +  
Sbjct: 431 ES------WDKAEHALMES-------LRASGCEFE------------IAP--GDGAFYGP 463

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
           K+  +L +          +G  +  GT    +S+P  + A + G DG  H  V +    +
Sbjct: 464 KIEYTLKDA---------IGRQWQCGTMQVDFSMPERLDAEYVGEDGGRHRPVMLHRAIV 514

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCD 378
           G++     ++   H G   +W   +AP +++++NI  A    CR+   K+   L   G  
Sbjct: 515 GSLERFIGILIEEHAGALPVW---LAPVQVAVLNITDAQQDYCREIAAKLQKALPNQGLR 571

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           V  D   E+I  +     L   P  ++ G K
Sbjct: 572 VVTDLRNEKITYKIREHSLQKLPYILVAGDK 602


>gi|254167402|ref|ZP_04874254.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623665|gb|EDY36228.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 465

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 153/394 (38%), Gaps = 73/394 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG++ WLP G + + N++   R+        E+  P L    +   E+   + +  E+  
Sbjct: 29  KGMHVWLPYGWQLMRNIDEYFRKVFTEHKHQEVYFPLLIPETEFKKEAEHIEGFENEVYW 88

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  D  ++  PT E  M  +F   I+S+ +LP   +QI   FR E +     +R
Sbjct: 89  VTHGGLDPLDVKLVVRPTSETAMYPMFSLWIRSHADLPLRIFQIVNVFRYETKQTRTFIR 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE    ++++   T E S+         + ++  +L L  + +R               
Sbjct: 149 VREVHFFESHTAHATAEESEEQIKDNIEIWKKVADKLALPYVLVR--------------- 193

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                    TD+D              P AA S +  E +  S 
Sbjct: 194 ------------------------KTDWDKF------------PGAAYS-IGAETIMPS- 215

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R +++  I  +   +S P    +   DG   YV   ++G+ + R+V A++  
Sbjct: 216 -------GRTLQIATIHQYFQNFSKPYGIEYLKEDGTHDYVHQTTFGM-SERLVGAIVGI 267

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDA--CEKIYARLSKVGCDVFWDDMGEQ 387
             D +G+I P  +AP ++ ++ I  K  + + ++A   E     L +V  D   D     
Sbjct: 268 HGDNRGLILPPEIAPIQVVIVPIVNKNKEGILQEARKIENELKELYRVHLD---DRDNYT 324

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G +F   +L G PL++ +G + +   +V +  R
Sbjct: 325 PGYKFYDWELKGVPLRLEIGPRDLEKGQVVLVRR 358


>gi|218895513|ref|YP_002443924.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228899114|ref|ZP_04063386.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
 gi|218542506|gb|ACK94900.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228860555|gb|EEN04943.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
          Length = 476

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|308513249|ref|YP_003474861.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|307346955|gb|ADC90325.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 646

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 155/402 (38%), Gaps = 57/402 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  +   G   +LP G    + +    RE   R    E+S P + +  LW  SG +  Y 
Sbjct: 253 MFSEEGPGFPFFLPNGMILKNTLLDYWREVHRREDYREISTPIMLNRHLWETSGHWFHYR 312

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M      +D+     P +       F+S I SYR+LP    ++ L  R E      G+
Sbjct: 313 DNMYTTV-IDDEDFAIKPMNCPGSMLTFKSTIHSYRDLPLRLAELGLVHRHEKSGVLHGL 371

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD- 205
           MR R F   DA+ F +TP+  +    ++      ++H    K    +  R E   +G D 
Sbjct: 372 MRVRAFTQDDAHIF-MTPDQIRDEIKRVVRLIDEVYHHFNFKYHIELSTRPEDS-MGTDE 429

Query: 206 ---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              ++ E + LA              D  IP              I E   A Y    D 
Sbjct: 430 EWNMATEALRLA------------VEDLKIPY------------VINEGDGAFYGPKLDF 465

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGI 319
           H E   DSL        R  + G I      + LP    A + G DG  H  + +    +
Sbjct: 466 HLE---DSL-------GRTWQCGTI---QLDFQLPQRFEAEYIGPDGNRHRPIVIHRVVL 512

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++     ++     GK   W   +AP ++ +++I  +       C ++ A L   G   
Sbjct: 513 GSIERFIGILIEHLAGKFPTW---LAPVQVRILSISDNQN---SYCSELLAELKNAGIRA 566

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +DD  E+IG +   A +   P  +I+G + +++ +V ++ R
Sbjct: 567 EFDDRNEKIGFKVRAAQVEKIPYMLIIGDQEMNEHRVSLRLR 608


>gi|138896280|ref|YP_001126733.1| threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|134267793|gb|ABO67988.1| Threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 649

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 184/435 (42%), Gaps = 38/435 (8%)

Query: 6   YFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   
Sbjct: 233 HYLQLLEEAKERDHRKLGKELELFTTS-QKVGQGLPLWLPKGATIRRLIERYIVDKEIAL 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + S
Sbjct: 292 GYDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L 
Sbjct: 352 YRELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILE 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   GL     R         LS+      D  + + +   D M         +  D +
Sbjct: 411 VYKDFGLDEYSFR---------LSYR-----DPQDKEKYYDDDEMWEKAQRMLREAMDEL 456

Query: 244 SLNSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            L+    E   A Y    DV   ++  +L +++ +S   ++    F    ++ L    T+
Sbjct: 457 GLDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFDL----TY 505

Query: 303 KGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G DGK H   +   G+ +   R VA +IE     KG  +P  +AP ++ +I + +   +
Sbjct: 506 IGEDGKPHRPVVIHRGVVSTMERFVAFLIEEY---KG-AFPTWLAPVQVEVIPVSSEAHL 561

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  D+  E+IG +   A +   P  ++VG K  ++  V ++ 
Sbjct: 562 --DYAYEVKQALQVNGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEAAERAVNVRR 619

Query: 421 RLTGIREDMSLEEVI 435
                 E ++L++ I
Sbjct: 620 YGEKESETVALDKFI 634


>gi|15594747|ref|NP_212536.1| prolyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|13633966|sp|O51363|SYP_BORBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2688299|gb|AAC66767.1| prolyl-tRNA synthetase (proS) [Borrelia burgdorferi B31]
          Length = 488

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|195942244|ref|ZP_03087626.1| prolyl-tRNA synthetase [Borrelia burgdorferi 80a]
          Length = 488

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|329767326|ref|ZP_08258851.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328836015|gb|EGF85706.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 647

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 159/386 (41%), Gaps = 36/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + S DL++ SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRRTIERYIVDKEVELGYDHVYTPIMGSKDLYITSGHWDHYQEDMFPPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + + M+  P +      ++++   SYR LP    ++ +  R E      G+ R R   
Sbjct: 322 EMDHETMVLRPMNCPHHMMVYKNERHSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           + DA+ F + P+  K  +          +  LG+K+   R         LS+      D 
Sbjct: 382 LNDAHIF-VRPDQLKDEFKLTVGLIEEAYKDLGIKNFSYR---------LSYR-----DP 426

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENK 275
             T+ +   D M         +  D + L+ +  E   A Y    DV  E         K
Sbjct: 427 ENTEKYFDDDAMWNNAQQMLKETADELGLDYVEAEGEAAFYGPKLDVQVETAI-----GK 481

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
           + +   I++   F    ++ L     + G DGK H   +   GI +   R+VA ++E   
Sbjct: 482 QETLSTIQLD--FLLPERFEL----EYIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEY- 534

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             KG + P  ++P ++ +I +  ++    D  ++I   L K G  V  DD  E++G +  
Sbjct: 535 --KGDL-PTWLSPNQVRIIPV--NNDYHYDYSKEIMQELKKAGVKVAIDDRDEKLGYKIR 589

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  +++G K V +  V ++
Sbjct: 590 EAASKKIPYTLVIGDKEVENRNVNVR 615


>gi|224533003|ref|ZP_03673610.1| proline--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|225549051|ref|ZP_03770026.1| prolyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225549517|ref|ZP_03770483.1| prolyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|224512063|gb|EEF82457.1| proline--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|225369794|gb|EEG99241.1| prolyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|225370277|gb|EEG99715.1| prolyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 488

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|312148113|gb|ADQ30772.1| prolyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 488

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|229028244|ref|ZP_04184383.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1271]
 gi|228733080|gb|EEL83923.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1271]
          Length = 476

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 160/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+              H L L +                 
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQ----------AETLHILNLYA----------------- 185

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 186 -----------SFC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQEHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E ++++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQL 376


>gi|221217681|ref|ZP_03589149.1| prolyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|221192358|gb|EEE18577.1| prolyl-tRNA synthetase [Borrelia burgdorferi 72a]
          Length = 488

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|33862697|ref|NP_894257.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|73919817|sp|Q7V8D2|SYT_PROMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33634613|emb|CAE20599.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9313]
          Length = 640

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 156/416 (37%), Gaps = 90/416 (21%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GMI  H+KG   +  L Q         IRE  +     E+  P +    LW +SG ++ +
Sbjct: 261 GMIFWHAKGWAIYQVLEQ--------YIRETLSLHDYQEIRTPQVVDRSLWEKSGHWEKF 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             +M      N +  I  P +      IF   +KSYR+LP    +     R+E      G
Sbjct: 313 KDDMFTTTSENREYAI-KPMNCPCHVQIFNQGLKSYRDLPIRLAEFGSCLRNEPSGSLHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F+  DA+ F  T    +   +K       ++   G  S+ ++  + P   +G D
Sbjct: 372 LMRVRNFVQDDAHIF-CTELQVQEEVSKFIDLVFEVYRSFGFDSVLIKLSTRPEKRVGSD 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                                                       E W     A SD  + 
Sbjct: 431 --------------------------------------------EIWDKSEKALSDALDA 446

Query: 266 K--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADGKD--- 309
           K   +D LP         IE      +G ++  GT    +S+P  + A++   D +    
Sbjct: 447 KGLAWDLLPGEGAFYGPKIEFSLKDCLGRVWQCGTIQVDFSMPERLGASYVAEDSQRRTP 506

Query: 310 ---HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDAC 365
              H   +GS+     R +  +IE  + G+  IW   +AP ++ ++ I   + Q C+D C
Sbjct: 507 VMLHRAILGSF----ERFIGILIE-HYAGRLPIW---LAPVQVVVMGITDRNAQACQDIC 558

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +K+ A   +   D+      E+IG +     L   P  +I+G K     +V ++ R
Sbjct: 559 KKLSALEYRTEVDL----RNEKIGFKVREHTLQRVPFLIIIGDKEQQSGEVAVRTR 610


>gi|187918269|ref|YP_001883832.1| prolyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|119861117|gb|AAX16912.1| prolyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 491

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 171/422 (40%), Gaps = 81/422 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG    +P G    + + +I+ ++   TG      P L   + L  E      +  E+  
Sbjct: 35  KGCMVIMPYGYAIWERIKSILDDKFKETGHENAYFPLLIPYEFLEREKEHVKGFSPELAV 94

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +   + ++  PT E ++ +++   IKSYR+LP    Q     R E R R   +R
Sbjct: 95  ITTAGGEELAEPLVLRPTSETIIWNMYSKWIKSYRDLPVKINQWANIIRWEKRTR-PFLR 153

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           + EFL ++ ++     E +K +  + +F+  L ++ R                       
Sbjct: 154 TTEFLWQEGHT---AHETAKEALEETLFI--LNLYKRF---------------------- 186

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             + D     VFC +        +E   F   +S  +I                    ++
Sbjct: 187 --VEDYLAIPVFCGQK-------TEREKFAGAVSTYTI--------------------EA 217

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           L ++K+     ++ G   Y G  ++      F+   G+  YV   S+G+ + R++ A+I 
Sbjct: 218 LMQDKK----ALQAGTSHYLGLNFAKAFDVKFQNKKGEMDYVFATSWGV-STRLIGALIM 272

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK-------IYARLSKVGCDVFWD- 382
              D KG+I P  +AP +I ++ I   D    DA +K       I+  L +    V  D 
Sbjct: 273 VHSDNKGLILPPKIAPIEIIIVPIFKRDG---DANQKILEYSIIIFNLLKEAKFRVELDR 329

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSK--FVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D+    G +FA A+L G P+++ +GS   F++   V  + +    +  +S+EE+ +   H
Sbjct: 330 DVKNSPGFRFAAAELKGIPIRIEIGSNDIFMNCVTVARRDKDKNSKYQVSVEELSSKIRH 389

Query: 441 RF 442
             
Sbjct: 390 EL 391


>gi|224534632|ref|ZP_03675206.1| proline--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514101|gb|EEF84421.1| proline--tRNA ligase [Borrelia spielmanii A14S]
          Length = 488

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 166/414 (40%), Gaps = 85/414 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      +++I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIHSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L     L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYGFLEKEKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVIRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  S+                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSV--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  YV   S+G+ + R++ A+I    D +G+I P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRYVFASSWGV-STRLIGALIMVHSDERGLILPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVG 407
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ +G
Sbjct: 298 DKINKKILDYSDCVVQALKKAEFRVEIDKDIRSSPGFRFSSAEFKGIPIRLEIG 351


>gi|149180875|ref|ZP_01859377.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148851394|gb|EDL65542.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 647

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 96/444 (21%), Positives = 177/444 (39%), Gaps = 62/444 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +YFL + +   R+     ++L L   M  + + G+  +L  GQK  + + + +R+ QN  
Sbjct: 234 EYFLFLEEAQKRNHRKLGNELEL--FMFSEEAPGMPFYLNNGQKIRNELESFLRQIQNSF 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + +  LW +SG ++ Y KE +  ++ +D++    P +      IF+  + S
Sbjct: 292 DYEEVRTPIMMNRKLWEQSGHWEHY-KENMYFSEVDDQSFALKPMNCPGHMLIFKDKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ F +TP+  +            
Sbjct: 351 YRDLPIRMAEFGQVHRHEFSGALNGMLRVRTFCQDDAHIF-VTPDQIEEEITSALKLIDH 409

Query: 184 IFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++   G      +  R E       +  E +     G  +   +K    F          
Sbjct: 410 VYRTFGFNYDIELSTRPEDY-----MGEEALWDKAEGSLKNVLTKLGYSF---------- 454

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 SI E   A Y    D+H   + D+L  + + +   ++    F    K+ L    
Sbjct: 455 ------SINEGDGAFYGPKIDIH---IKDALKRSHQCATVQLD----FQMPEKFEL---- 497

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------WPDSVAPFKISLIN 353
                    HY+   +  +  + +  AV  S     GI+       +P  ++P ++S+I 
Sbjct: 498 ---------HYIDENNQKVRPVVIHRAVFGSIDRFLGILIEHFAGAFPVWLSPLQVSVIP 548

Query: 354 I--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +  + H Q     CE+I +RL + G  V  D   E++G +   A +   P  ++VG K  
Sbjct: 549 VSKRHHGQY----CEEIRSRLKEEGLRVECDLREEKLGYKIREAQMKKAPYILVVGDKEQ 604

Query: 412 SDSKVEIKHRLTGIREDMSLEEVI 435
               V ++       ++  LEE I
Sbjct: 605 ESQTVNVRSYGEQNSQEEKLEEFI 628


>gi|288801214|ref|ZP_06406669.1| proline--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331825|gb|EFC70308.1| proline--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 493

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 247 SIVEQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +  E+W A P        +EK   +L     E      + ++ G   + G  ++     T
Sbjct: 199 TFAEKWMAVPVLQGVKSESEKFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVT 258

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I   ++  
Sbjct: 259 FLNKENKAEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKLAPIQVVIIPIAKGEEQL 317

Query: 362 RDACEKIYARLSKV---GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               EK+   +SK+   G  V +DD   ++ G +FA  +L G P+++++G + +  + VE
Sbjct: 318 SAITEKLQPVISKLRENGISVKFDDSDNKRPGFKFADYELKGVPVRLVMGGRDLESNTVE 377

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           I  R T  +E +SL  +  +      N
Sbjct: 378 IMRRDTLEKETVSLNGIAEHIIQLLDN 404



 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R ++ +I  PT E ++ + +++ IKS+R+LP    Q     R E+R R   +R+ EFL +
Sbjct: 116 RLEEELIIRPTSETIIWNTYKNWIKSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQ 174

Query: 159 DAYSFDLTPEGSKHSYNKMFVSY 181
           + ++   T E +     KM   Y
Sbjct: 175 EGHTAHATKEEAVEEARKMLSVY 197


>gi|258647088|ref|ZP_05734557.1| threonine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260853035|gb|EEX72904.1| threonine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 647

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 155/426 (36%), Gaps = 89/426 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      + + +R+ Q R G +E+  P + S +L+V SG Y  YGK+  + 
Sbjct: 262 KGLPIWLPKGTVLRQQLMSFLRKIQKRFGYMEVITPHIGSKNLYVTSGHYAKYGKDSFQA 321

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      ++     SY++LP    +    +R E      G+ R R
Sbjct: 322 IHTPEEGEEYMLKPMNCPHHCAVYSWQPHSYKDLPLRIAEFGTVYRYEQSGELHGLTRVR 381

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + ++    + +F  L  +                      
Sbjct: 382 GFTQDDAHIF-CRPDQVKQEFLRVMDIIMIVFRALNFEQ--------------------- 419

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN--EKLFDSL 271
                                    F+  ISL   V++    Y  + DV +  E+     
Sbjct: 420 -------------------------FEAQISLRDKVKR--EKYIGSDDVWDKAEQAIIEA 452

Query: 272 PENKRVSARGIEVGHIFYFGTK---------------------YSLP--MSATFKGADGK 308
            E K + A+ IE G   ++G K                     Y+LP      + G D K
Sbjct: 453 CEEKGLQAK-IEYGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFQLEYTGEDSK 511

Query: 309 DHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDAC 365
            H  V +     G++    AV+     G   +W  PD      IS        +   D  
Sbjct: 512 KHRPVMIHRAPFGSLERFTAVLIEHTGGHFPLWLMPDQCVILPIS--------ERFNDYA 563

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+  +L   G     D+  E++G +    ++   P  ++VG K  +D  V ++ +  G 
Sbjct: 564 HKVKEQLEAAGIRANIDERNEKVGRKIRDNEMKHIPYLLVVGEKEQADGSVNVRKQGEGT 623

Query: 426 REDMSL 431
           +E M++
Sbjct: 624 QETMTI 629


>gi|189219701|ref|YP_001940342.1| Prolyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189186559|gb|ACD83744.1| Prolyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 512

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 143/359 (39%), Gaps = 85/359 (23%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E ++   F   I+SYR+LP    Q     R E+RPR   +R+ EFL ++ ++ 
Sbjct: 123 LVIRPTSETIIGAAFSRWIQSYRDLPLLINQWANVVRWEMRPRL-FLRTTEFLWQEGHTV 181

Query: 164 DLTPEGSKH---SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             +PE ++    S  K++  ++R     G  ++P                +++ +  E++
Sbjct: 182 HASPEEARQEALSIVKLYEEFMR-----GYLALP----------------VIVGEKPESE 220

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   D              +  +L ++V+                             +
Sbjct: 221 RFPGAD--------------NTYTLEAMVQ---------------------------DRK 239

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++VG   + G  +S   +  F   +GK  +    S+G+ + R++  +I +  D  G++ 
Sbjct: 240 AVQVGTSHFLGQNFSKANNIRFLDKEGKMQFAWTSSWGV-STRLIGTLIMAHGDDNGLVL 298

Query: 341 PDSVAPFKISLINI--KAHDQV--------CRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           P +VAP ++ ++ +  K  D+              EKI     K+  +V   +MG  + S
Sbjct: 299 PPTVAPLQVVILPLVKKEEDKTKILDFAHQIAGEIEKIDFAGEKLRVEVDKREMGGGVKS 358

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +    G PL+V +G + VS   + +K R      D  L+E   +    F    P L
Sbjct: 359 WEWIKK--GVPLRVEIGPQEVSSRLLTVKRR------DKELKEREQFTFEGFLERLPAL 409


>gi|84999652|ref|XP_954547.1| prolyl-trna synthetase [Theileria annulata]
 gi|65305545|emb|CAI73870.1| prolyl-trna synthetase, putative [Theileria annulata]
          Length = 702

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 168/420 (40%), Gaps = 57/420 (13%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           ++++R+ MI  +   G Y +LP      +  N    ++  + G      P   + + L  
Sbjct: 221 QVIIRSEMIEYYDISGCYIFLPSSYFIWETFNEWFNKQIKQRGVENCYFPMFVTKEKLEA 280

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D      +   PT E +M   F   I+S+R+LP    Q   
Sbjct: 281 EKTHLEGFSPEVAWVTRNGDVDLPDPIAIRPTSETIMYPEFARWIRSHRDLPLKLNQWNS 340

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +RSREFL ++ ++   T + +  +  +M                    
Sbjct: 341 VVRWEFKQPTPFIRSREFLWQEGHTAHTTEQEALDTVYEML------------------- 381

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  +L  ++I++ +      F  ++++  P+         I  + S  E++     
Sbjct: 382 -------NLYSKYILVINVLIMSRFY-EEYLSVPV---------IKGVKSENEKFAGSKM 424

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            TS      L   +P N     RG++       GT +S      ++  +G    V   S+
Sbjct: 425 TTS------LESFIPAN----GRGVQAATSHLLGTTFSDMFDIRYEDEEGVKQKVHQTSW 474

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKV 375
           G    R +  +I    D KG++ P  VA  ++ ++ I  K  +QV     E ++  L++ 
Sbjct: 475 GFTT-RSIGIMIMVHGDDKGLVLPPRVAKVQVVIVPIMSKTAEQVMLRVNE-LFQLLTEA 532

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  G   G +F   +L G PL++ VG+K V ++ V +  R    + D+ LE +
Sbjct: 533 GFRVKLDDRRGYTPGFKFNHWELRGVPLRLEVGAKDVENNTVRLVRRDNFAKSDVPLENL 592


>gi|228913143|ref|ZP_04076782.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228846548|gb|EEM91561.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 502

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 122 VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 178

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 179 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 212

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 213 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 249 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 298 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 356

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 357 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 402


>gi|163786094|ref|ZP_02180542.1| prolyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877954|gb|EDP72010.1| prolyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
          Length = 492

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D KG++
Sbjct: 235 KALQAGTSHFLGQNFAKAFDVKFTNNEGKLDHVWATSWGV-STRLMGALIMTHSDDKGLV 293

Query: 340 WPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVA 395
            P ++APF++ ++ I  +D+   +       I   L  +G    +D     + G++FA  
Sbjct: 294 LPPNLAPFQVVIVPIYKNDEQFDLISKKANTISKELKALGVSCKFDKRSTHRPGAKFAQH 353

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +L G PL++ +G K + ++ VE+  R T  +E + ++++
Sbjct: 354 ELQGVPLRIAIGPKDLENNTVELARRDTLTKEIVQMDDL 392



 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  GK  +    + ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R R
Sbjct: 102 DKEGKLRVDPNAKLEEELIVRPTSEAIIWNTYKGWIQSYRDLPILINQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKDAYS 162
              +R+ EFL ++ ++
Sbjct: 162 L-FLRTAEFLWQEGHT 176


>gi|297156878|gb|ADI06590.1| prolyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 471

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 89/461 (19%), Positives = 184/461 (39%), Gaps = 82/461 (17%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P  ++ PR        AE+A +  +  T +I  +  G++      ++   ++
Sbjct: 1   MAKAPVLTPQAEDFPRWYQDLINKAELADNGPVRGTMVIRPYGYGLW------ERMQQDM 54

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPT 109
           +A I+ E  +     + +P    + L  E+   + +  E+  +     K +    +  PT
Sbjct: 55  DARIKAEGVQNAYFPLFIP---QSYLTKEAEHVEGFAPELAIVTHGGGKKLEEPVVVRPT 111

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
            E ++ + F   ++SYR+LP    Q     R ELRPR   +R+ EFL ++ ++   T E 
Sbjct: 112 SETIINEYFAKWVQSYRDLPLLINQWANVVRWELRPRL-FLRTSEFLWQEGHTAHATYED 170

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           ++   +++        HR                                 V+   DFM+
Sbjct: 171 ARDFASRI--------HR--------------------------------HVYA--DFME 188

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                      ++++++ ++ + TA       ++   L     E      + +++G    
Sbjct: 189 -----------NVLAMDVVLGRKTAKERFAGAINTLTL-----EGMMGDGKALQLGTSHE 232

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++   +  F   +GK   V   S+G    R+V A++    D  G+  P  +AP + 
Sbjct: 233 LGQNFARAFNTQFLSKEGKQELVWQTSWG-STTRMVGALVMMHGDDSGLRIPPRLAPVQA 291

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV-ADLLGFPLQVIVGS 408
            ++ IK  D+       +I  RL+  G  V  DD  +    + AV  +L G P+++ VG 
Sbjct: 292 VVLAIKG-DEAVLAKVREIGDRLTAAGVRVQVDDRTDTPFGRRAVDWELKGVPVRIEVGP 350

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + +      +  R+ G +E + LE + +        ++ +L
Sbjct: 351 RDLEGGTAMVVRRIPGGKEPVRLEALPDLLPKVLEEDQALL 391


>gi|71282219|ref|YP_269610.1| threonyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|123747383|sp|Q480A9|SYT_COLP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71147959|gb|AAZ28432.1| threonyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 636

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 160/426 (37%), Gaps = 45/426 (10%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + +T  + H  + + G+  W   G      +   IRE+ +     E+  P 
Sbjct: 238 EAEKRDHRKIGKTLDLFHWQEEAPGMVFWHNDGWTIYTELEKFIREKLHEYDYDEVKAPM 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG +D Y   M        +  I  P +      IF   +KSYR+LP    
Sbjct: 298 MMDRSLWEKSGHWDKYADGMFTTTSEKREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRIA 356

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F +  +  +    K       ++   G + 
Sbjct: 357 EFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCMESQ-VQAEVKKCIEMVYDVYGSFGFED 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           + ++  + P     S E    A+ G  Q     +     +P E   +   I         
Sbjct: 416 VVVKLSTRPDNRIGSDEIWDKAEAGLAQALTDSNIAFEYLPGEGAFYGPKIEFT------ 469

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH 310
                         L D L        R  + G +      ++LP  + AT+ G D + +
Sbjct: 470 --------------LMDCL-------GRAWQCGTV---QLDFALPERLGATYVGEDNERY 505

Query: 311 YVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M    I G++     ++     GK   +P  ++P + +++NI          CEK+ 
Sbjct: 506 TPVMIHRAILGSLERFIGILIEEFTGK---FPTWLSPIQTTIMNITDKQA---PYCEKVV 559

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L + G     D   E+IG +     L   P  ++VG K +   ++ ++ R       M
Sbjct: 560 KKLKENGFRAKIDLRNEKIGFKIREHTLKRVPYLLVVGDKEMESGEISVRTRSGEDLGKM 619

Query: 430 SLEEVI 435
           S+++ I
Sbjct: 620 SVDDFI 625


>gi|58700004|ref|ZP_00374566.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533480|gb|EAL57917.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 342

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 4/172 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W   G    + + + IR++    G  E+  P L S +LW +SG +D + +
Sbjct: 6   IQEEAVGQVFWHEQGYILYNVLESYIRKKLINNGYFEVKTPILVSKELWEKSGHWDKFRE 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + +   K +   P +      IF SH +SYR+LP    +     R+E      G+M
Sbjct: 66  NMFIVDESESKKLAIKPMNCPCHVQIFNSHTRSYRDLPIRMAEFGTCHRNESSGSLHGLM 125

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP 201
           R R F   DA+ F +  E   +S    F   L+ ++  LG   I ++    P
Sbjct: 126 RVRGFTQDDAHIFCM--EEQVNSETIKFCDLLKEVYSELGFNEISVKFSDRP 175


>gi|319902630|ref|YP_004162358.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Bacteroides
           helcogenes P 36-108]
 gi|319417661|gb|ADV44772.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Bacteroides
           helcogenes P 36-108]
          Length = 646

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 161/432 (37%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +      I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K  +       LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKDEF-------LRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S DF +F          D ++ +  +   E W     A  +   EK   
Sbjct: 410 --------VFQSMDFENF---EAQISLRDKVNRDKYIGSDENWEKAEQAIIEACEEKGLK 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + GAD + H  V + 
Sbjct: 459 ARIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMVH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  PD VA   IS        +   D  +++   L
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYAQEVKLFL 569

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K       D+  E+IG +    ++   P  ++VG K   + ++ ++ +  G +  M +E
Sbjct: 570 KKYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAENKEIAVRKQGEGDKGTMKIE 629

Query: 433 EVINYASHRFSN 444
           E     S    N
Sbjct: 630 EFAKKISEEVQN 641


>gi|259502210|ref|ZP_05745112.1| threonine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169828|gb|EEW54323.1| threonine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 600

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 154/403 (38%), Gaps = 35/403 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I + +   G   +  P L + D +  SG ++ Y  +M    
Sbjct: 216 GLPYWMPKGATIRRTIERYIIDREVADGYEHVYTPVLMNLDAYKTSGHWEHYRDDMFPPM 275

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 276 DMGDGEMLEIRPMNCPSHIQIYKHHIRSYRDLPMRIAELGMMHRYEKSGALSGLQRVREM 335

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R              + L D
Sbjct: 336 TLNDGHTF-VAVDQIRDEFAKILNLIMDVYKDFDITDYSFR--------------LSLRD 380

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               + +   D M D          DD+       E   A Y    D+  +    +L  +
Sbjct: 381 PKNKEKYYGNDEMWDESQKLLKAAMDDLNLDYYEAEGEAAFYGPKLDIQTKT---ALGND 437

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++      FG  Y         G DGK+H   M   GI G M    A +   +
Sbjct: 438 ETMSTIQLDFMQPDRFGLSYV--------GKDGKEHMPVMIHRGIVGTMERFVAYLTEIY 489

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +   D+   D  +++  ++      V  DD  E++G +  
Sbjct: 490 KGAFPTW---LAPEQVHIIPVS--DEKHGDYAKQLADKMKAAQIRVVVDDRNEKMGYKIR 544

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            A     P  ++VG   V D+ V ++      +  MS +  +N
Sbjct: 545 EAQTQKVPYTLVVGDDEVKDNAVSVRKYGEEAQNSMSQDAFMN 587


>gi|212638370|ref|YP_002314890.1| threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|226701399|sp|B7GGN9|SYT_ANOFW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212559850|gb|ACJ32905.1| Threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 643

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 167/404 (41%), Gaps = 36/404 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG +D Y   M   
Sbjct: 264 QGLPLWLPKGATIRRTIERYIVDKELSLGYQHVYTPVLGSVELYKTSGHWDHYKDGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      +++  I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNEQLVLRPMNCPHHMMVYKHKIHSYRELPIRIAELGTMHRYEMSGALTGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    L ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFKRVVNLILDVYKDFGLTDYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             + + +   D M     S   +  D + L+    E   A Y    DV   ++  +L ++
Sbjct: 429 PQDKEKYYDDDAMWEKAQSMLKEAMDELGLDYYEAEGEAAFYGPKLDV---QVRTALGKD 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYIGEDGKPHRPVVIHRGVVSTMERFVAFLIEEY 537

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +     +  D   ++   L   G  V  D+  E+IG + 
Sbjct: 538 ---KG-AFPTWLAPIQVQVIPVAP--SIHMDYAYEVKHALQVAGIRVEVDEREEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             A +   P  ++VG   V++  V ++       E M L+  ++
Sbjct: 592 REAQMQKIPYMLVVGDNEVNERAVNVRKYGEQKSETMPLDAFVD 635


>gi|33240514|ref|NP_875456.1| threonyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|73919816|sp|Q7VBM8|SYT_PROMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33238042|gb|AAQ00109.1| Threonyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 643

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 173/449 (38%), Gaps = 45/449 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      KL L      + + G+  W P G      + + IRE      
Sbjct: 231 YLLKIEEAEKRDHRKIGKKLDL--FHTQEEAPGMIFWHPKGWSIYQVLESFIRETLILND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      LW +SG +D + ++M      N +  I  P +      +F   +KSY
Sbjct: 289 YKEIKTPQTVDRSLWEKSGHWDKFKEDMFTTTSENREYAI-KPMNCPCHIQVFNEGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T    +   +K       +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGALHGLMRVRNFVQDDAHIF-CTEAQIQDEVSKFIDLVFDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII- 243
           +   G +SI ++  + P     S E    ++         K F    +P E   +   I 
Sbjct: 407 YKAFGFESIIIKLSTRPTKRVGSDEIWDKSEKALADALNIKKFEWSYLPGEGAFYGPKIE 466

Query: 244 -SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            SL   +++         D        S+P   R+ A  I+        ++  +P+    
Sbjct: 467 FSLKDCIDRVWQCGTIQVDF-------SMPH--RLGASYIDE------NSQKKVPVML-- 509

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                  H   +GS+     R +  +IE  ++GK   +P  ++P ++ +I I   + +  
Sbjct: 510 -------HRAILGSFE----RFIGILIE-EYEGK---FPPWLSPIQVIVIGITDRNSI-- 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK--H 420
             C++I   L   G    +D   E++G +     L   P  +I+G K   +  V ++  H
Sbjct: 553 -KCKEISNLLMLRGYRATYDTRNEKVGLKIREHTLQRIPYLLIIGDKEQEEGTVSVRTMH 611

Query: 421 RL-TGIREDMSLEEVINYASHRFSNNRPV 448
            +  G  +    +E+IN A     N +PV
Sbjct: 612 GIDMGSMKLTEFQEIINEAISLKGNYKPV 640


>gi|254724859|ref|ZP_05186642.1| prolyl-tRNA synthetase [Bacillus anthracis str. A1055]
          Length = 510

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|115372906|ref|ZP_01460211.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115370173|gb|EAU69103.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 423

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 134/330 (40%), Gaps = 76/330 (23%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++   F   I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 47  EEPLVIRPTSETIINRSFAKWIQSYRDLPLLINQWANVMRWEMRTRL-FLRTTEFLWQEG 105

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T   ++    +M   Y R F                                   
Sbjct: 106 HTCHETEADAEKETLQMLEVY-RTF----------------------------------- 129

Query: 221 VFCSKDFMDFPI----PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              ++D+M  P+     SE   F   +   SI                    +++ ++K+
Sbjct: 130 ---AEDYMAMPVLTGRKSETERFAGALRTYSI--------------------EAMMQDKK 166

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                ++ G     G  ++      F+G DGK H+V   S+G+ + R++  +I +  D  
Sbjct: 167 ----ALQAGTSHNLGQNFAKAFDTQFQGRDGKQHHVWQTSWGV-STRLIGGLIMTHSDDA 221

Query: 337 GIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYAR---LSKVGCDVFWDDMGEQI-GS 390
           G++ P  +AP  + +I I  KA D       EK++A    L + G +V  DD   +  G 
Sbjct: 222 GLVVPPRLAPTHVVIIPILGKAADAEKTQVLEKVHAMAADLRRAGLNVLVDDDDTKSPGF 281

Query: 391 QFAVADLLGFPLQVIVGSK-FVSDSKVEIK 419
           ++   +++G  L+V +G K    DS V ++
Sbjct: 282 KYNEHEVVGTCLRVELGPKDLAKDSCVMVR 311


>gi|145220122|ref|YP_001130831.1| prolyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|259511614|sp|A4SFS0|SYP_PROVI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145206286|gb|ABP37329.1| prolyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 481

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 135/330 (40%), Gaps = 63/330 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TP
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATP 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E S+    +M    +R++     + + M               +++    +++ F   D 
Sbjct: 167 EESQEEVMRM----IRVYKTFAEEYMAMP--------------VIMGRKTDSEKFAGAD- 207

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                        +   + ++++   A  A TS  HN                       
Sbjct: 208 -------------ETYCIEAMMQDGKALQAGTS--HN----------------------- 229

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G  ++      F+  +G   YV   S+G+ + R++ A+I +  D +G++ P  +A  
Sbjct: 230 --LGQNFAKAFDCQFQTKEGVLDYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLATR 286

Query: 348 KISLINIKAHDQVCRDA-CEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVI 405
           ++ +I I   D+    A  E + A L + G   F DD  +   G +FA  +L G P+++ 
Sbjct: 287 QVVIIPILRGDKAAVLAKAESMAAELKENGIPAFVDDSEQNSPGWKFAEYELQGIPVRIE 346

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           VG + +         R T  + ++ L+  +
Sbjct: 347 VGPRDIDKGVCIAARRDTLEKTELQLDATL 376


>gi|92113922|ref|YP_573850.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
 gi|123387452|sp|Q1QWK7|SYT_CHRSD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91797012|gb|ABE59151.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
          Length = 632

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 157/425 (36%), Gaps = 51/425 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + R      + + + G+  W P G      V   +R   
Sbjct: 229 KTYLKRLEE----AEKRDHRKLARKLDFFHMQEEAPGMVFWHPRGWTLWQTVEQYMRGVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
             +G  E+  P +    LW +SG +D+Y + M    +   +     P +      +F S 
Sbjct: 285 KDSGYQEIRCPQIMDVSLWQKSGHWDNYAENMF-FTESEKREYALKPMNCPGHVQVFNSG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP  + +     R+E      G+MR R F   D + F  T E  +         
Sbjct: 344 LRSYRELPVRYGEFGGCHRNEPSGALHGIMRVRAFTQDDGHVF-CTEEQIEPEVTAFHRQ 402

Query: 181 YLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            L ++   G   I ++    P   +G D + +    A+          D     +P E  
Sbjct: 403 ALAVYRDFGFDDIAVKIALRPEKRLGSDDNWD---RAEEALRNALSRCDVEWEELPGEG- 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                           A Y    + H   + D L    +V    ++    F   T+    
Sbjct: 459 ----------------AFYGPKIEYH---MRDCLGREWQVGTMQVD----FMMPTR---- 491

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A +   DG +   V +    +G+M     ++   + G   +W   ++P +  ++NI  
Sbjct: 492 LGAQYVAEDGSRQAPVMLHRAIVGSMERFIGILIEHYAGSMPLW---LSPLQAVVLNIT- 547

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+  E +  RL K G  V  D   E+IG +     L   P  ++VG K V    V
Sbjct: 548 --DAQREYAESVTQRLQKSGLRVKTDLRNEKIGFKIREHTLQKIPYLLVVGDKEVEAGAV 605

Query: 417 EIKHR 421
            ++ R
Sbjct: 606 AVRTR 610


>gi|330995385|ref|ZP_08319295.1| threonine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329575880|gb|EGG57404.1| threonine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 647

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 152/428 (35%), Gaps = 65/428 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +++ Q R G  ++  P +   +L+V SG Y  YGK+  +
Sbjct: 261 GKGLPMWLPKGTALRLRLEDFLKKIQKRYGYQQVMTPHIGGKNLYVTSGHYAHYGKDSFQ 320

Query: 96  L--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                  D+  +  P +     +I+    +SY++LP    +    +R E      G+ R 
Sbjct: 321 PIHTPEADEEYMLKPMNCPHHCEIYAWKPRSYKDLPLRIAEFGTVYRYEQSGELHGLTRV 380

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K  + ++      IF              G +  D     I 
Sbjct: 381 RSFTQDDAHIF-CRPDQVKDEFIRVMEIIQIIF--------------GALNFDTFEAQIS 425

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D    + +   D                       E W     A  +   EK  ++  
Sbjct: 426 LRDPNNREKYIGSD-----------------------EVWEEAENAIIEACKEKGLNAKV 462

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      + G D + H  V +    
Sbjct: 463 EYGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFKLEYTGEDNQKHRPVMIHRAP 522

Query: 319 IGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G+M    AV+     G   +W  PD VA   IS        +   D   K+ A   +  
Sbjct: 523 FGSMERFCAVLIEHTAGHFPLWLTPDQVAILPIS--------EKFNDYAHKLCAYFDERD 574

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                DD  E+IG +    ++   P  +IVG K  +D  V ++ +  G +  M  E+   
Sbjct: 575 VRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAADGTVSVRKQGEGDQGSMKFEDFAK 634

Query: 437 YASHRFSN 444
             +    N
Sbjct: 635 KINEEVRN 642


>gi|218235284|ref|YP_002365239.1| prolyl-tRNA synthetase [Bacillus cereus B4264]
 gi|229148794|ref|ZP_04277043.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1550]
 gi|218163241|gb|ACK63233.1| proline--tRNA ligase [Bacillus cereus B4264]
 gi|228634682|gb|EEK91262.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1550]
          Length = 476

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSKAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|169334538|ref|ZP_02861731.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259255|gb|EDS73221.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
          Length = 637

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 163/419 (38%), Gaps = 56/419 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI +   G   +LP G    + +    REE  + G  E+  P + +  LW  SG +D Y 
Sbjct: 255 MICEEGPGFPFFLPKGMVIRNELENFWREEHRKRGYQEIKTPLILNEQLWHTSGHWDHYK 314

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M     D ND A+   P +      +++  + SYR+LP    ++    R EL     G
Sbjct: 315 DNMYFTRIDDNDYAI--KPMNCPGSMLVYKRKMWSYRDLPLRIGEMGQVHRHELSGALHG 372

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +MR R F   DA+ F + PE  K     +  F+ Y  +++  G K   +   + P     
Sbjct: 373 LMRVRTFTQDDAHIF-MLPEQIKEEVIGVIDFIDY--VYNMFGFK-YHVELSTRPDDSMG 428

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S E   +A     +    K  MD+ +   +  F                Y    D H E 
Sbjct: 429 SDEDWNMATEALREAMEEKG-MDYVVNEGDGAF----------------YGPKLDFHLED 471

Query: 267 LFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM 322
                        R  + G I   F    ++ L    T+ G DG+ H  V +     G++
Sbjct: 472 CL----------GRTWQCGTIQLDFQMPQRFDL----TYIGHDGEKHRPVMIHRVIFGSI 517

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++     G   +W   +AP +  LI I   +    +  + I  +L + G     D
Sbjct: 518 ERFIGILTEHFAGAFPLW---LAPVQAKLIPITDRNL---EYVKGIKDKLEQKGIRCEID 571

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED---MSLEEVINYA 438
           D  E++G +   A L   P  +I G + + +  + ++ R  G  ED   MS++E IN A
Sbjct: 572 DRSEKMGYKIREAQLEKVPYMIIAGDRDMENGVISVRARKDG--EDLGAMSVDEFINKA 628


>gi|305664643|ref|YP_003860930.1| threonyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88707344|gb|EAQ99590.1| threonyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 646

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 160/433 (36%), Gaps = 67/433 (15%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +  +G+  WLP G    + +   +++ Q + G
Sbjct: 231 YLQLLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLEQFLKKAQKKAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG++  +     ++D+  +  P +     +I+ S   
Sbjct: 290 YEMVVTPHIGQKELYVTSGHYAKYGEDSFQPIHTPKDDEEFLLKPMNCPHHCEIYNSRPF 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +    L
Sbjct: 350 SYRELPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDQEFKDVIDLSL 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG                                     F +F       D D  
Sbjct: 409 YVLSSLG-------------------------------------FENFKAQVSVRDLDTP 431

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT-- 292
                 VE W     A  +   EK  D + E+   +  G +        +G  +  GT  
Sbjct: 432 EKYIGSVENWEKAENAIINAAKEKGLDFVVESGEAAFYGPKLDFMVKDALGRNWQLGTIQ 491

Query: 293 -KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVAP 346
             Y+LP     T+KG+D + H  V +     G+M    A++     G   +W  P+    
Sbjct: 492 VDYNLPERFDLTYKGSDNESHRPVMIHRAPFGSMERFVALLLEHTGGNFPLWLIPEQAII 551

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
             +S    + H++      EK+   L         D+  E +G +   A++   P  +IV
Sbjct: 552 LPVS----EKHEKY----AEKVLNSLENNEIRALIDNRNETVGKKIREAEMGKLPFMLIV 603

Query: 407 GSKFVSDSKVEIK 419
           G     ++ + ++
Sbjct: 604 GESEEENNTIAVR 616


>gi|121594741|ref|YP_986637.1| threonyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|166223314|sp|A1W8I6|SYT_ACISJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120606821|gb|ABM42561.1| Ser-tRNA(Thr) hydrolase [Acidovorax sp. JS42]
          Length = 639

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 151/391 (38%), Gaps = 56/391 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y  
Sbjct: 255 IDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRDNGYQEVKGPQILDKTLWEKTGHWDKYRD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    +++ D A+   P +      IF+  IKSYR+LP  + +     R+E      G+
Sbjct: 315 NMFTTESEKRDYAL--KPMNCPGHILIFKQGIKSYRDLPLRYGEFGQCHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   D + F    E    +    + + L +++   G  +I  +  + P   IG D
Sbjct: 373 MRVRGFTQDDGHIF--CTEDHILAECTAYTALLQKVYKDFGFHNIIYKVATRPEARIGSD 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S       D  E  +  S       + +   +F+             AP       +  
Sbjct: 431 ES------WDKAEHALMES-------LRASGCEFE------------IAP--GDGAFYGP 463

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
           K+  +L +          +G  +  GT    +S+P  + A + G DG  H  V +    +
Sbjct: 464 KIEYTLKDA---------IGRQWQCGTMQVDFSMPERLDAEYVGEDGGRHRPVMLHRAIV 514

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCD 378
           G++     ++   H G   +W   +AP +++++NI  A    CR+   K+   L   G  
Sbjct: 515 GSLERFIGILIEEHAGALPVW---LAPVQVAVLNITDAQQDYCREIAAKLQKALPNQGLR 571

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           V  D   E+I  +     L   P  ++ G K
Sbjct: 572 VVTDLRNEKITYKIREHSLQKLPYILVAGDK 602


>gi|262281009|ref|ZP_06058792.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257909|gb|EEY76644.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 158/415 (38%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG   +Y  
Sbjct: 255 MQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYLEIKTPQIVDFTLWEKSGHAANYAD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDMAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP  + A++   D  +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPERLDASYVTEDNDRDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +ACEK+ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLSPLQACVMNITDSQA---EACEKVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|326335459|ref|ZP_08201646.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692225|gb|EGD34177.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 492

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 142/352 (40%), Gaps = 65/352 (18%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK ++    + ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   
Sbjct: 105 GKLIVDPEAKLEEELIVRPTSEAIIWNTYKNWIQSYRDLPILINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E +     KM   Y     +     +P               
Sbjct: 164 LRTAEFLWQEGHTAHATREEAIEEAQKMNEVYATFVEQ--YMGVP--------------- 206

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            ++     E + F                 DD   + ++++   A  A TS         
Sbjct: 207 -VIRGRKTEAERFAGA--------------DDTYCIEALMQDGKALQAGTS--------- 242

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                              + G  ++      +   +G   YV   S+G  + R++ A+I
Sbjct: 243 ------------------HFLGQNFAKAFEVKYANKEGVLDYVWASSWG-SSTRLMGALI 283

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDV-FWDDMG 385
            S  D  G++ P  +AP ++ ++ I K  +Q+   R     +   L K    V F DD  
Sbjct: 284 MSHSDDNGLVLPPLLAPIQVVIVPIYKGEEQLQSIRQRITPLMQALKKHEITVKFDDDDT 343

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ G +F   +L G P+++ VG + + ++  E+  R T  +E +S E ++ +
Sbjct: 344 QKPGFKFHEYELKGVPIRLAVGQRDLENNTYEVARRDTLTKESISGERIVEH 395


>gi|30018647|ref|NP_830278.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|229125889|ref|ZP_04254914.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
 gi|81435975|sp|Q81IE9|SYP2_BACCR RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|29894188|gb|AAP07479.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|228657547|gb|EEL13360.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
          Length = 476

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVLPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|327481051|gb|AEA84361.1| threonyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 640

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 6/177 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G     N+   +R+ Q   G  E+  P +    LW +SG + +Y + 
Sbjct: 256 QEEAPGMVFWHPAGWTLYQNLEQYMRQVQRENGYQEVRTPQVVDRILWEKSGHWSNYAEN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M   +  N    +  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 316 MFTTSSENRDYAV-KPMNCPCHVQIFNQGLKSYRDLPLRMAEFGACHRNEPSGALHGIMR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            R F   DA+ F  T E  K          L+++   G   I M+  + P   +G D
Sbjct: 375 VRGFTQDDAHIF-CTEEQVKKEAADFIKLTLKVYADFGFSDIAMKLSTRPAKRVGSD 430


>gi|58700192|ref|ZP_00374690.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533291|gb|EAL57792.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 246

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 11  RNKDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRK 70

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 71  KLINNGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 130

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           SH +SYR+LP    +     R+E      G+MR R F   DA+ F +  E   +S    F
Sbjct: 131 SHTRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM--EEQVNSETIKF 188

Query: 179 VSYLR-IFHRLGLKSIPMRAESGP 201
              L+ ++  LG   I ++    P
Sbjct: 189 CDLLKEVYSELGFNEISVKFSDRP 212


>gi|146282712|ref|YP_001172865.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166225484|sp|A4VM22|SYT_PSEU5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145570917|gb|ABP80023.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 640

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 6/177 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G     N+   +R+ Q   G  E+  P +    LW +SG + +Y + 
Sbjct: 256 QEEAPGMVFWHPAGWTLYQNLEQYMRQVQRENGYQEVRTPQVVDRILWEKSGHWSNYAEN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M   +  N    +  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 316 MFTTSSENRDYAV-KPMNCPCHVQIFNQGLKSYRDLPLRMAEFGACHRNEPSGALHGIMR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            R F   DA+ F  T E  K          L+++   G   I M+  + P   +G D
Sbjct: 375 VRGFTQDDAHIF-CTEEQVKKEAADFIKLTLKVYADFGFSDIAMKLSTRPAKRVGSD 430


>gi|290889941|ref|ZP_06553027.1| hypothetical protein AWRIB429_0417 [Oenococcus oeni AWRIB429]
 gi|290480383|gb|EFD89021.1| hypothetical protein AWRIB429_0417 [Oenococcus oeni AWRIB429]
          Length = 663

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 168/410 (40%), Gaps = 43/410 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   + E++ +   + +  P + + DL+  SG +D Y  +M    
Sbjct: 267 GLPVWLPNGAAIRRTIEDYLVEKERQNSYMNVYTPVVSNLDLYKRSGHWDHYRDDMFPAM 326

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRFGVMRSREF 155
             +D + +   P +     +IF    +SYR+LP+   +  Q+   ++     G+ R RE 
Sbjct: 327 TADDGEQLELRPMNCPSHIEIFEHEPRSYRDLPYRIAEFGQMHRWEKSGALTGLSRVREM 386

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLA 214
            + D ++  + PE  +  +  +      ++H  G               D  + F +   
Sbjct: 387 TLNDGHTV-VAPEQVEPEFKGILQLIRDVYHDFGFT-------------DQDYRFRLSYR 432

Query: 215 DTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           D   T+ +   D M +    +     DD+       E   A Y    D+   +   +L  
Sbjct: 433 DPKNTKKYYDDDAMWEHAQAALKRAMDDMGLDYFEAEGEAAFYGPKLDI---QFKTALGN 489

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESS 332
            + +S   ++      F  KY+        G DGKDH   +   G +G M    A +   
Sbjct: 490 EETMSTIQLDFLLPERFDMKYT--------GEDGKDHRPVLIHRGVVGTMERFVAFLIEK 541

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G+   W   +AP +  +I  N  AH    R+    IY++L K G  +  D+  E++G 
Sbjct: 542 YKGQFPTW---LAPVQAVVIPVNYGAHGDYARN----IYSKLMKDGRRIKLDNRDEKLGY 594

Query: 391 QFAVADL-LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL---EEVIN 436
               A + L  P  ++VG + + D+ V ++ R +   ++M +   EE+IN
Sbjct: 595 LIRDAQVNLKTPYILVVGDQELRDNSVTVRFRGSDQTKEMKIDEFEEMIN 644


>gi|196040211|ref|ZP_03107513.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|229089515|ref|ZP_04220784.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
 gi|196029066|gb|EDX67671.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|228693822|gb|EEL47516.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
          Length = 476

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|310818519|ref|YP_003950877.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309391591|gb|ADO69050.1| Prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 477

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 140/348 (40%), Gaps = 75/348 (21%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++   F   I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 101 EEPLVIRPTSETIINRSFAKWIQSYRDLPLLINQWANVMRWEMRTRL-FLRTTEFLWQEG 159

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T   ++    +M   Y R F                                   
Sbjct: 160 HTCHETEADAEKETLQMLEVY-RTF----------------------------------- 183

Query: 221 VFCSKDFMDFPI----PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              ++D+M  P+     SE   F   +   SI                    +++ ++K+
Sbjct: 184 ---AEDYMAMPVLTGRKSETERFAGALRTYSI--------------------EAMMQDKK 220

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                ++ G     G  ++      F+G DGK H+V   S+G+ + R++  +I +  D  
Sbjct: 221 ----ALQAGTSHNLGQNFAKAFDTQFQGRDGKQHHVWQTSWGV-STRLIGGLIMTHSDDA 275

Query: 337 GIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYAR---LSKVGCDVFWDDMGEQI-GS 390
           G++ P  +AP  + +I I  KA D       EK++A    L + G +V  DD   +  G 
Sbjct: 276 GLVVPPRLAPTHVVIIPILGKAADAEKTQVLEKVHAMAADLRRAGLNVLVDDDDTKSPGF 335

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           ++   +++G  L+V +G K ++     +  R    +E + L + +  A
Sbjct: 336 KYNEHEVVGTCLRVELGPKDLAKDSCVMVRRDVRQKEFVPLAQAVEKA 383


>gi|262276749|ref|ZP_06054542.1| threonyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262223852|gb|EEY74311.1| threonyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 637

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 161/423 (38%), Gaps = 48/423 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S G   W   G     ++   +R++Q   G +E++ P +    LW +SG ++ + +E
Sbjct: 257 QEESPGAVFWHQKGWSLFQSLVKFMRDKQTDAGYLEVNTPEMLDKTLWEKSGHWEKF-QE 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +   D ++K     P +      +F   +KSY++LP    +     R E      G+MR
Sbjct: 316 HMYTTDADEKTFAIKPMNCPGHIQVFNQGLKSYKDLPLKISEFGKVHRYEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  T E       K+    L I+   G K++ ++               
Sbjct: 376 VRAFTQDDAHIF-CTEEQITEESLKVTNLILDIYKSFGFKNVKLK--------------- 419

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             +D  E +V   K +      SE    D I +     E      A         L D++
Sbjct: 420 -FSDRPEKRVGDDKIWN----KSEKALLDAIKTSGLKYEINKGEGAFYGPKIEFVLIDAI 474

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
             + +     ++          ++LP  + A++   DG K   V +     G++     +
Sbjct: 475 GRDWQCGTLQVD----------FNLPGRLGASYVANDGSKKIPVMLHRAMFGSLERFIGI 524

Query: 329 IESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +   H GK   W  P+ VA   IS            D   K+   L K G     DD  E
Sbjct: 525 LIEHHTGKFPFWLSPEQVAVLPIS--------NKQNDYASKVKLLLEKKGLRSIIDDRNE 576

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +I  +     +   P+ +I G+K V ++ + I+      ++ +SLEE +   S    +N 
Sbjct: 577 KINYKIREHSVSKIPVLMICGAKEVQNNTITIRRLGQTNQQTVSLEEAVTNLS--LESNT 634

Query: 447 PVL 449
           P +
Sbjct: 635 PSI 637


>gi|229108063|ref|ZP_04237688.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|229143182|ref|ZP_04271614.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|296501219|ref|YP_003662919.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|228640263|gb|EEK96661.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|228675338|gb|EEL30557.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|296322271|gb|ADH05199.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 476

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|30260563|ref|NP_842940.1| prolyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47525667|ref|YP_017016.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183410|ref|YP_026662.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|227813066|ref|YP_002813075.1| prolyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|254686784|ref|ZP_05150642.1| prolyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254738991|ref|ZP_05196693.1| prolyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744578|ref|ZP_05202257.1| prolyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254756164|ref|ZP_05208193.1| prolyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254761982|ref|ZP_05213831.1| prolyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|81584321|sp|Q81Z76|SYP2_BACAN RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|30253931|gb|AAP24426.1| proline--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47500815|gb|AAT29491.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177337|gb|AAT52713.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|227002361|gb|ACP12104.1| proline--tRNA ligase [Bacillus anthracis str. CDC 684]
          Length = 508

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|300119016|ref|ZP_07056727.1| prolyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|298723632|gb|EFI64363.1| prolyl-tRNA synthetase [Bacillus cereus SJ1]
          Length = 476

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|229051703|ref|ZP_04195164.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH676]
 gi|228721660|gb|EEL73143.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH676]
          Length = 476

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|311069390|ref|YP_003974313.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869907|gb|ADP33382.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 643

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 166/406 (40%), Gaps = 36/406 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P L S +L+  SG ++ Y   M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKELSLGYEHVYTPVLGSKELYETSGHWNHYQDGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ +   P +      I+++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 IELDNETLALRPMNCPHHMMIYKNDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + +       ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDEFIRTVRLIQDVYEDFGLNDYTFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T+ +   D M     S   D  D+I S     E   A Y    DV   ++  ++ + 
Sbjct: 429 PEDTEKYFDDDEMWNKAQSMLKDAMDEIGSDYYEAEGEAAFYGPKLDV---QVKTAIGKE 485

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DGK H   +   G+ +   R VA +IE  
Sbjct: 486 ETLSTVQLD----FLLPERFDL----TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIE-E 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           H G    W   +AP +  +I +     V  D  +K+  RL + G  V  D   E+IG + 
Sbjct: 537 HKGALPTW---LAPVQFQVIPVSP--SVHLDYAKKVQERLQREGLRVEVDIRDEKIGYKI 591

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A +   P  ++VG +   +  V ++       E +SL++ +  A
Sbjct: 592 REAQMQKIPYMLVVGDQEAENGAVNVRKYGEQKSETISLDDFVKKA 637


>gi|154174749|ref|YP_001407384.1| threonyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|171769252|sp|A7GVZ2|SYT_CAMC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112802358|gb|EAT99702.1| threonyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 606

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 159/416 (38%), Gaps = 55/416 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  I+ +     G   +  P L  AD+W  SG Y +Y KE +   
Sbjct: 232 GLPIWLPNGGRLRSKLEQILYKAHRDRGYEPVRGPELLKADVWKRSGHYANY-KENMYFT 290

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +D      P +      ++++ I+SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 291 TIDDAEYGIKPMNCVGHIKVYQTEIRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFA 350

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D++ F + P   K +                   + + + +G I  +   E+ +   T
Sbjct: 351 QDDSHIFCM-PSQIKQNI------------------LEILSFAGKIMQNFGFEYEMEIST 391

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   S +  D    +     D+      I E   A Y    D+   K+ D+L     
Sbjct: 392 KPAKAIGSDEIWDIATNALKEALDENGFKYGIDEGGGAFYGPKIDI---KITDAL----- 443

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--------HYVQMGSYGIGAMRVVAAV 328
              R  + G I      ++LP        D  +        H   +GS+     R +  +
Sbjct: 444 --KRKWQCGTI---QVDFNLPERFDLGYIDANNERQRPVMLHRALLGSF----ERFIGIL 494

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           IE +        P  +AP ++ ++ I  AH     D  ++I   L K   D       E 
Sbjct: 495 IEHTAGE----LPFFIAPTQVVIVPISDAH----LDYAKEIARELRKFNIDSEVASKNES 546

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  +   A+    P+ +++G   V++  V ++ R    + DMSL E +N    + S
Sbjct: 547 LNKRIRTAEKQRVPMIIVLGDNEVANRSVALRDRQARTQSDMSLAEFLNLTKEKLS 602


>gi|83283367|gb|ABC01299.1| prolyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 437

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/385 (20%), Positives = 155/385 (40%), Gaps = 73/385 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEM---LRLADR 99
           P G +  + +   + EE  +     +  P L    L+  E    D +  E+    R+  +
Sbjct: 5   PYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIATVTRVGQK 64

Query: 100 N-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFL 156
             ++ +   PT E +M D F + I SYR+LP  + Q    +++    RP    +R+ EFL
Sbjct: 65  QLEENLFIRPTSEVLMMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRP---FLRTSEFL 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++ ++          SYN+     L+I +               I    + E ++L   
Sbjct: 122 WQEGHTV-------HSSYNEAENFCLKILN---------------IYEKFAKEILLLP-- 157

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               V C K        +E   F                 A   D +         E+  
Sbjct: 158 ----VICGK-------KTEKEKF-----------------AGAKDTYT-------IESLM 182

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D  
Sbjct: 183 FDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDDN 241

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P  ++P ++ +I IK  +Q+     E I  +LS    DV  D+  +  G + + A+
Sbjct: 242 GLVLPSKISPIQVQIIQIKNTEQI-DQVVEIIKDKLSDYRIDV--DNSDKSFGFKISEAE 298

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           + G P+++ +G + + ++++ I  R
Sbjct: 299 IKGIPIRIEIGPRDLENNQITISRR 323


>gi|299771535|ref|YP_003733561.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701623|gb|ADI92188.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 640

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 158/415 (38%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG   +Y  
Sbjct: 255 MQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYLEIKTPQIVDFTLWEKSGHAANYAD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDMAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP  + A++   D  +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPERLDASYVTEDNDRDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +ACEK+ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLSPLQACVMNITDSQA---EACEKVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|290989139|ref|XP_002677200.1| threonyl-tRNA synthetase [Naegleria gruberi]
 gi|284090806|gb|EFC44456.1| threonyl-tRNA synthetase [Naegleria gruberi]
          Length = 672

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 8/137 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H ++ G+  +LP GQ+  +++ +++R E    G  E+  P +  +DLW  SG +D Y 
Sbjct: 291 FFHPYAPGMVFFLPHGQRLFNSIQSLMRNEYWHRGYSEVQTPNVFHSDLWKTSGHWDKYA 350

Query: 91  KEMLRLA-DRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           + M  L  D+   ++  +  P+H      +F+   +SYR LP  F    +  R+EL+   
Sbjct: 351 ENMFVLEIDKAQHSLKPMNCPSH----CLMFKHRTRSYRELPIRFADFGVLHRNELKGAL 406

Query: 148 -GVMRSREFLMKDAYSF 163
            G+ R R+F   DA+ F
Sbjct: 407 TGMTRLRKFQQDDAHIF 423


>gi|332664741|ref|YP_004447529.1| Prolyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333555|gb|AEE50656.1| Prolyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 489

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + +  YV   S+G+ + R++  +I +  D  G+
Sbjct: 233 GKALQAGTSHFLGQNFAKAFDVKFLNENNQQEYVWATSWGV-STRLMGGLIMTHSDDDGL 291

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADL 397
           + P  +AP ++ ++ I     V  +   KI A L   G  V +D DM  + G +FA  ++
Sbjct: 292 VVPPKLAPTQVVIVPIPKPSPVIDEVVHKIMAALKAKGIRVKYDMDMKNRPGFKFAEHEM 351

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            G P+++ +G + +++ +VE+  R T  +    LE +  Y
Sbjct: 352 HGIPVRLAIGERDLANGQVEVARRDTKEKTQQPLEGIEQY 391



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D +R+ I SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETIIWDTYRTWINSYRDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T E +     K+   Y
Sbjct: 174 HTAHATKEEAVEETLKILDIY 194


>gi|212704422|ref|ZP_03312550.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
 gi|212672143|gb|EEB32626.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
          Length = 648

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 159/395 (40%), Gaps = 53/395 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  WLP G      +    R E  +     +  P L   + W  SG YD Y + M  
Sbjct: 263 APGMVFWLPKGMMMRTILEDFWRREHIKRNYDLVQGPQLLRVETWQRSGHYDHYRQNMYF 322

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +D+  I  P +      I+R+ ++SYR+LP  ++++ +  R E      G++R R+
Sbjct: 323 TQIEDDQYGI-KPMNCISHMLIYRNDLRSYRDLPQRYFELGVVHRHEKSGTLHGLLRVRQ 381

Query: 155 FLMKDAYSFDLTP---EGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSH 208
           F   DA+    TP   EG       +    + +F   +++G+ + P  +    IG D + 
Sbjct: 382 FTQDDAHIL-CTPEQLEGEILGVIHLIRDLMHLFGFDYKVGISTRPKDS----IGTDEAW 436

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E   LA     +     D     +P E  + D             A Y    DV   +L 
Sbjct: 437 E---LATNALIEAVKKAD-----MPYEINEGDG------------AFYGPKIDV---RLL 473

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           D +    + S   ++    F    ++ L    T+ G DG+ H   M    I G++     
Sbjct: 474 DCIGREWQCSTIQVD----FTLPERFDL----TYVGQDGERHRPVMVHRAIMGSLERFIG 525

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           V+   + G    W   +AP +  ++ +  AH++    ACE++ A    +G  V  D   E
Sbjct: 526 VLIEQYAGAMPTW---LAPEQARILTVTDAHNEAALKACEELKA----LGIRVTADTRNE 578

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++G +   A L   P  ++VG K      V ++ R
Sbjct: 579 KLGFKVREAQLAKVPYILVVGEKEAQAGGVNVRLR 613


>gi|255531804|ref|YP_003092176.1| threonyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255344788|gb|ACU04114.1| threonyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 641

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/413 (19%), Positives = 157/413 (38%), Gaps = 61/413 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G    + +   +   Q + G  ++  P +   +L++ SG Y+ YGK+  +  
Sbjct: 262 GLPLWLPKGAALRERLVQFLTRAQAKAGYEQVVTPHIGHKNLYITSGHYEKYGKDAFQPI 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              +  +     P +     +I+++  +SY++LP  F +    +R E      G+ R R 
Sbjct: 322 KTPQEGEEFFLKPMNCPHHCEIYKTKPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+    L +F  LG      +              + L 
Sbjct: 382 FTQDDAHLF-CRPDQVKEEFKKVIDLVLYVFKSLGFDDYTAQ--------------VSLR 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D      +   D                       E W     A  +  +EK   ++ E 
Sbjct: 427 DPENKAKYIGSD-----------------------ENWRLAETAIIEAADEKGLPTVVEY 463

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G+D + H  V +     G
Sbjct: 464 GEAAFYGPKLDFMVKDALGRKWQLGTIQVDYNLPERFELEYTGSDNQKHRPVMIHRAPFG 523

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++    AV+     G   +W   ++P +  ++ I    +   D  +K+   L+       
Sbjct: 524 SLERFIAVLIEHCAGNFPLW---LSPEQFIILPI---SEKYEDYAKKVSDELNNSDIRGL 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            D   E+IG +   A++   P  +I+G K +++ K  ++    G   +M+L+E
Sbjct: 578 IDFRDEKIGRKIRDAEVKKIPYMLIIGEKEMAEGKASVRKHGEGDLGEMTLQE 630


>gi|157826951|ref|YP_001496015.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|166225492|sp|A8GVV1|SYT_RICB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157802255|gb|ABV78978.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 633

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + ++G+  W   G    + +   IR +  + G IE+  P L    LW  SG ++ +  +
Sbjct: 256 QEEAQGMVFWHDKGWSVYNTIEQYIRRKIRKNGYIEVKTPVLVDKSLWELSGHWEKFRDD 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L + +DK +   P +      IF+  IKSYR+LP    +  L  R+E      G+MR
Sbjct: 316 MFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMR 374

Query: 152 SREFLMKDAYSF 163
            R  +  DA+ F
Sbjct: 375 VRSLVQDDAHIF 386


>gi|91205350|ref|YP_537705.1| threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|122990926|sp|Q1RJ48|SYT_RICBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91068894|gb|ABE04616.1| Threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
          Length = 635

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + ++G+  W   G    + +   IR +  + G IE+  P L    LW  SG ++ +  +
Sbjct: 256 QEEAQGMVFWHDKGWSVYNTIEQYIRRKIRKNGYIEVKTPVLVDKSLWELSGHWEKFRDD 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L + +DK +   P +      IF+  IKSYR+LP    +  L  R+E      G+MR
Sbjct: 316 MFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMR 374

Query: 152 SREFLMKDAYSF 163
            R  +  DA+ F
Sbjct: 375 VRSLVQDDAHIF 386


>gi|51473419|ref|YP_067176.1| threonyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|73919822|sp|Q68XE8|SYT_RICTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51459731|gb|AAU03694.1| Threonine translase [Rickettsia typhi str. Wilmington]
          Length = 635

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + ++G+  W   G    + +   IR++  + G IE+  P L    LW  SG +  +  +
Sbjct: 256 QEEAQGMVFWHDKGWSIYNTIEQYIRKKNRKNGYIEVKTPVLVDKSLWEASGHWAKFRCD 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L + +DK +   P +      IF+  IKSYR+LP    +  L  R+E      G+MR
Sbjct: 316 MFTL-ETDDKILALKPMNCPCHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMR 374

Query: 152 SREFLMKDAYSF 163
            R  +  DA+ F
Sbjct: 375 VRSLVQDDAHIF 386


>gi|226320972|ref|ZP_03796518.1| prolyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226233623|gb|EEH32358.1| prolyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 488

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKG 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|257486172|ref|ZP_05640213.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010502|gb|EGH90558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 640

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  ET +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|332529095|ref|ZP_08405059.1| threonyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
 gi|332041318|gb|EGI77680.1| threonyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 644

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 149/391 (38%), Gaps = 56/391 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 LDEHSPGTVFWHPKGWTVWQEVEQYMRRVYRENGYREVKGPQILDKSLWEKTGHWDKYRE 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    +++ D A+   P +      I++  +KSYR+LP  + +     R+E      G+
Sbjct: 315 NMFTTESEKRDYAL--KPMNCPGHILIYKQGVKSYRDLPLRYGEFGACHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   D + F    E    +  K F S L +++   G   I  +  + P   IG +
Sbjct: 373 MRVRAFTQDDGHIF--CTEDQIQAEVKAFTSLLQKVYKDFGFTEIIYKLSTRPEKRIGSE 430

Query: 206 LSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATS 260
            S +     LA+ G     C  D++    P E   +   I     +++  QW      T 
Sbjct: 431 ESWDRAENALAE-GLRASGCEFDYL----PGEGAFYGPKIEYTLKDALGRQWQ---CGTI 482

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGI 319
            V       +LPE                        + A F G DG  H  V +    +
Sbjct: 483 QVDP-----NLPER-----------------------LDAEFVGEDGGRHRPVMLHRAIV 514

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCD 378
           G++     ++   H G    W   +AP +++++NI  A    C++  +K+   L      
Sbjct: 515 GSLERFIGILIEQHGGALPAW---LAPTQVAVLNITDAQADYCQEIAQKLRKALPNQELR 571

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           V  D   E+I  +     +   P  ++ G K
Sbjct: 572 VETDLRNEKITYKIREHSMQKLPFILVAGDK 602


>gi|225552331|ref|ZP_03773271.1| prolyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371329|gb|EEH00759.1| prolyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 488

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHVDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ ++   T E +      + 
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGHTAHATEEEALEETLLIL 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             Y R                         E++ +       VFC K        SE   
Sbjct: 178 DVYKRFIE----------------------EYLAIP------VFCGKK-------SEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDTLKKAEFRVEIDKDIRNSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|110668486|ref|YP_658297.1| threonyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121687233|sp|Q18H54|SYT_HALWD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109626233|emb|CAJ52691.1| threonine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 642

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/427 (21%), Positives = 162/427 (37%), Gaps = 73/427 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+K L+ +++  R      G   +  P L   +LW +SG Y++Y  +M  L 
Sbjct: 262 GLPLYHPDGKKILNELSSFARSLNLEAGYEPVETPHLFRTELWKQSGHYENYVDDMF-LL 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D +D+     P +      IF  H  SYR+LP  +++    +R E R    G+ R   F 
Sbjct: 321 DVSDEEYGLKPMNCPGHATIFDQHSWSYRDLPVRYFEDGKVYRKEQRGELSGLSRVWSFT 380

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVL 213
           + D + F   PE  +     +  +   +    GL+   ++  R E   +GGD       +
Sbjct: 381 IDDGHLF-CQPEQIEQEVTHVMDAIYSVLDTFGLEAHVALATRPEKS-VGGD------EI 432

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFD-------------DIISLNSIVEQWTAPYAATS 260
            +  ETQ+          + S+N D+D             D    +++  QW  P     
Sbjct: 433 WENAETQLRSV-------LESQNIDYDLEPGDGAFYGPKIDFAFEDALGRQWDGPTVQLD 485

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI- 319
                                      F    ++ L    T+ G D  DH   M    + 
Sbjct: 486 ---------------------------FNMPDRFEL----TYTGEDNTDHQPVMIHRALY 514

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+      V+    +GK  +W   +AP ++ ++ I + DQ+      +I   LS     +
Sbjct: 515 GSYERFFMVLIEHFNGKFPLW---LAPDQVRILPI-SDDQLG--YAHRIKNELSDFRVSI 568

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +D    +G +   A     P  +I+G   VS   + ++ R    ++D+ L    ++  
Sbjct: 569 --EDRAWTLGRKIRAAQEERVPYMIIIGDDEVSTETISVRDRKEREKQDVDLSTFHSHLK 626

Query: 440 HRFSNNR 446
             + N R
Sbjct: 627 SEYENKR 633


>gi|312149307|gb|ADQ29378.1| prolyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 488

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L   + L  E    D +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYSFLEREKDHIDGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------IEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKG 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTISRR 365


>gi|289623636|ref|ZP_06456590.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647146|ref|ZP_06478489.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298486701|ref|ZP_07004758.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158784|gb|EFH99847.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330867695|gb|EGH02404.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 640

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  ET +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|281420278|ref|ZP_06251277.1| threonine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405773|gb|EFB36453.1| threonine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 650

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 153/416 (36%), Gaps = 65/416 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           KG+  WLP G +    +  ++R         E+  P +    L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQELLRSLLKPYNYQEVICPGIGGKSLYVTSGHYAHYGKDAFQP 322

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IQTPEEDEEYMLKPMNCPHHCEVYARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F +  +  K  +  +    L++F   G ++   +              I L
Sbjct: 383 TFTQDDAHIF-VRSDQVKSEFENVIDVILKVFKIFGFENYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  +T+ +   D                       E W     A  +   EK  ++  E
Sbjct: 428 HDPKDTEKYIGSD-----------------------EIWEESENAIREACKEKGLETREE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 VGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFKLEYTAEDNSKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D  +K+   L K G 
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKFNDYAQKVRQYLDKQGV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  MS+EE
Sbjct: 577 RALVDDRNEKIGRKIRDNELKRVPYMVIVGEKESAEGLVSMRKQGGGEQATMSMEE 632


>gi|150007636|ref|YP_001302379.1| prolyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262381848|ref|ZP_06074986.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|301310397|ref|ZP_07216336.1| proline--tRNA ligase [Bacteroides sp. 20_3]
 gi|166980137|sp|A6LAP3|SYP_PARD8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149936060|gb|ABR42757.1| prolyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262297025|gb|EEY84955.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|300831971|gb|EFK62602.1| proline--tRNA ligase [Bacteroides sp. 20_3]
          Length = 493

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  +      TF   +GK  Y    S+G+ + R++ A+I S  D  G+
Sbjct: 236 GKALQAGTSHFLGQNFGKAFDVTFIDKNGKSDYAWATSWGV-STRLIGALIMSHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I    +      EK   I A+L  +G  V +DD   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYRSAEQLTQISEKVAGIVAKLKALGISVKYDDADNKKPGWKFAE 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++ +G + + ++ +E+  R T  +E ++ + +  Y  +
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIEVMRRDTLEKETITCDGIEEYVKN 400



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +R+ I+SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYRNWIQSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKM 177
            ++ ++   T E ++    KM
Sbjct: 173 WQEGHTAHATREEAEIEAKKM 193


>gi|284045075|ref|YP_003395415.1| threonyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283949296|gb|ADB52040.1| threonyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 643

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 164/420 (39%), Gaps = 75/420 (17%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G    +++ A  RE     G  E+  P +  ++LW  SG +D Y + M  
Sbjct: 267 SPGSAFWLPRGTSLWNSLVAFTREMNEPRGYQEVKTPLIFDSELWRTSGHWDKYRENMF- 325

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           +    D+ +   P +      +FRS   SYR LP  + +  L  R+E      G+MR R 
Sbjct: 326 VTHAEDRDLAVKPMNCPGHAHLFRSQRHSYRELPVRYSEPGLLHRNEPSGTLHGLMRVRH 385

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG---------LKSIPMRAESGPIGGD 205
           F   DA+ F  T E     + ++      IF  LG         L + P R     IG D
Sbjct: 386 FAQDDAHIF-CTEE---QVHGEVVACLDLIFDTLGRFGFEIDVELSTRPERR----IGTD 437

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E    A+ G+ +    +  + + +   +  F                Y    D H  
Sbjct: 438 ---EMWDRAE-GKLRAALEQQGLRYRVNEGDGAF----------------YGPKIDFH-- 475

Query: 266 KLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKD------HYVQMGS 316
            + DS+        R  ++G +   + F  ++ L    T+ GAD ++      H   MGS
Sbjct: 476 -VTDSI-------GRSWQLGTVQLDYSFPERFEL----TYVGADDREHRPVMIHRAAMGS 523

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           Y     R +  +IE    G+  +W   +AP +  ++ I   H    RD    + A+L   
Sbjct: 524 Y----ERFIGMLIEHWA-GEFPVW---LAPVQAIVLPIADRHADYARD----VVAQLRAA 571

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  DD  E +G +   A+L   P  +++G +     +V ++    G    + + E +
Sbjct: 572 RVRVELDDRTESVGRKIRDAELQKIPYMLVIGDREREAGEVALRRHREGDEGSLPVAEFV 631


>gi|312622904|ref|YP_004024517.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203371|gb|ADQ46698.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 639

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 159/410 (38%), Gaps = 45/410 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   +LP G    + +    REE  + G  E+  P + + DLWV+SG +D Y  
Sbjct: 258 IFEEGPGFPFFLPKGMIIRNILEDFWREEHKKRGYQEIKTPIMLTKDLWVQSGHWDHYKG 317

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +D+     P +      +++    SYR LP    ++ L  R EL     G+M
Sbjct: 318 NMY-FTKIDDQEFAIKPMNCPGSILVYKRKSHSYRELPERLCELGLVHRHELSGVLHGLM 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F + P   K     +       +   G K    +  R E+  +G D  
Sbjct: 377 RVRCFTQDDAHIF-MLPSQIKDEIKGVIDLIDYFYSVFGFKYHVELSTRPENS-MGTD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   +A+T   +    +  +D+ I   +  F                Y    D H E  
Sbjct: 433 -EQWNMAETALKEAL-EEVGIDYKINEGDGAF----------------YGPKIDFHLE-- 472

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            DSL    + +   ++    F    ++ L     + G DG  H  V +     G++    
Sbjct: 473 -DSLKRTWQCATIQLD----FQMPERFDL----YYIGEDGAKHRPVMLHRVVFGSIERFI 523

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++     G   +W   +AP +I +I +  +     D   KI   L + G  V  D   E
Sbjct: 524 AILTEHFAGAFPVW---LAPTQIRIIPVSDN---FNDYAAKISQILKENGFRVEEDFRSE 577

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +G +   A L   P  VIVG K   D+ + ++ R  G     +++E ++
Sbjct: 578 TVGYKIRDAQLQKIPYMVIVGEKEQRDNTIAVRDRKKGDLGSFTIDEFVS 627


>gi|29345832|ref|NP_809335.1| threonyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|73919769|sp|Q8AAP2|SYT_BACTN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29337725|gb|AAO75529.1| threonyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 646

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 165/432 (38%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQEFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S +F +F          D ++    +   + W     A  +   EK   
Sbjct: 410 --------VFRSMNFQNF---EAQISLRDKVNREKYIGSDDNWEKAEQAIIEACEEKGLP 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  PD VA   IS    +  +QV      K+Y ++
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPISEKFNEYAEQV------KMYLKM 571

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++   V  DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 572 HEIRAIV--DDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKYE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKILNEEVQN 641


>gi|67459371|ref|YP_246995.1| threonyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|73919821|sp|Q4UKU3|SYT_RICFE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67004904|gb|AAY61830.1| Threonyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 635

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + ++G+  W   G    + +   IR++  + G  E+  P L    LW  SG ++ + ++
Sbjct: 256 QEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNGYTEVKTPVLVDKSLWEASGHWEKFRED 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L + +DK +   P +      IF+  IKSYR+LP    +  L  R+E      G+MR
Sbjct: 316 MFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMR 374

Query: 152 SREFLMKDAYSF 163
            R  +  DA+ F
Sbjct: 375 VRSLVQDDAHIF 386


>gi|315608143|ref|ZP_07883135.1| proline--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250112|gb|EFU30109.1| proline--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 493

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLMGALIMVHSDDNGL 294

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I I K  DQ+       + +  RL  +G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVIIPITKGADQLQAINAKLQPVIDRLRDMGISVKYDDADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +L G P+++++G + + D+ +EI  R T  +E +S + +
Sbjct: 355 YELKGVPVRLVMGGRDLEDNTIEIMRRDTLEKESVSFDGI 394



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A R D+ ++  PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AARLDEELVIRPTSETIIWNTYKNWIHSWRDLPIMCNQWCNVMRWEMRTR-PFLRTSEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|257867921|ref|ZP_05647574.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257874250|ref|ZP_05653903.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257802004|gb|EEV30907.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257808414|gb|EEV37236.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 477

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++     T+   + K  Y    S+G+ + R++ A+I +  D  G+
Sbjct: 214 GKAVQAGTSHYMGTKFAEAFDITYLTKENKHTYAHTTSWGV-STRLLGALIMTHGDENGL 272

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           ++P ++AP ++ L+ +     +    +  E++YA     G  V  DD     G +F   +
Sbjct: 273 VFPPTIAPTQVVLLPVGPWKKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGYKFNEWE 332

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L G  L++  G + +   KV +K R    ++ ++LEE+  +         P L
Sbjct: 333 LKGACLRIECGPRDLEAGKVMVKVRDLPDKQTVALEELEAFVDQELQAMTPRL 385


>gi|254515029|ref|ZP_05127090.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219677272|gb|EED33637.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 645

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 164/457 (35%), Gaps = 94/457 (20%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      KL L      + + G+  W P G      +   +RE+Q   
Sbjct: 230 QYLRRIEEAEKRDHRKIGKKLDLF--HTQEEAPGMVFWHPQGWTIYQVIEQYMREQQRAQ 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P L    LW +SG  D +G +M  L   +++     P +      +F   ++S
Sbjct: 288 DYQEIKTPQLVDMSLWEKSGHADKFGDDMFMLT-ADEREFAVKPMNCPCHVQVFNQGLRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF----DLTPEGSKHSYNKMFV 179
           YR+LP    +     R+E      G+MR R F   D + F     + PE S       F+
Sbjct: 347 YRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDGHIFCTEEQIQPEVS------TFI 400

Query: 180 SYLR-IFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +L  ++   G   +  R  + P   +G D                              
Sbjct: 401 DFLHAVYADFGFDEVIYRLSTRPAQRVGTD------------------------------ 430

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD--SLPENKRVSARGIE------VGHI 287
                         E W     A +D  + +  D   LP         IE      +G +
Sbjct: 431 --------------EDWDRAEKALADALDAQGLDWQELPGEGAFYGPKIEFSLKDCIGRV 476

Query: 288 FYFGT---KYSLP--MSATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +  GT    +S+P  + A +   DG        H   +GS+     R +  +IE + +G 
Sbjct: 477 WQMGTIQVDFSMPGRLDAQYVAEDGSRKTPVMLHRAILGSF----ERFIGILIE-NFEGS 531

Query: 337 GIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +W   +AP +  +INI +  D+  R     +   L   G  VF D   E+IG +    
Sbjct: 532 FPVW---LAPKQAVVINITEKQDEYVR----FVEDSLKNKGFRVFSDLRNEKIGFKIREH 584

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +   P  V+VG K V    V ++ R       MSLE
Sbjct: 585 TIQRVPYLVVVGEKEVEAKTVAVRSRNGEDLGTMSLE 621


>gi|330989241|gb|EGH87344.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 640

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  ET +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|320324302|gb|EFW80381.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328576|gb|EFW84578.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330885566|gb|EGH19715.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 640

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  ET +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|126667900|ref|ZP_01738865.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126627560|gb|EAZ98192.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 641

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 179/452 (39%), Gaps = 86/452 (19%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      KL L    + + + G+  W P G      +   +R+  +R G
Sbjct: 231 YVHRIEEAEKRDHRKVGKKLNL--FHMQEEAPGMVFWHPDGWTIYQKMEQYMRDILHRHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E+  P + S  LW +SG +D + + M    ++++D A+   P +      +F   +KS
Sbjct: 289 YQEIKTPQIVSRSLWEKSGHWDKFKEGMFTTESEKHDFAI--KPMNCPCHIQVFNQGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF----DLTPEGSKHSYNKMFV 179
           Y++LP    +     R+E      G+MR R F   DA+ F    D+  E SK      F+
Sbjct: 347 YKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIFCEESDIQNEVSK------FI 400

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                    DL HE  V  D G T++     +     P +    
Sbjct: 401 -------------------------DLLHE--VYKDFGFTEIL----YKLSTRPEKRVGS 429

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFG 291
           D++         W    AA     N +   ++ LP         IE      +G ++  G
Sbjct: 430 DEV---------WDKSEAALEQALNREGVKWELLPGEGAFYGPKIEFSLKDCIGRVWQCG 480

Query: 292 T---KYSLP--MSATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           T    +S+P  + A +   + +       H   +GS+     R +  +IE  ++G    +
Sbjct: 481 TIQVDFSMPGRLGAQYVADNSERKTPVMLHRAVLGSF----ERFIGILIE-EYEGA---F 532

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP +++++NI  +    R+ CE +  +   +G  V  D   E+IG +     +   
Sbjct: 533 PSWLAPTQVAILNITDNQ---REYCENLAKKWDSLGFRVNADLRNEKIGFKIREHTINKV 589

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           P  V+VG K V ++ V ++ R       +SLE
Sbjct: 590 PFLVVVGDKEVENNTVAVRTRKGEDLGTLSLE 621


>gi|300914721|ref|ZP_07132037.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
 gi|300889656|gb|EFK84802.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
          Length = 634

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 160/413 (38%), Gaps = 51/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHGYQEIKTPIILNEELWRRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTEIDGETYAIKPMNCPGAMLVYKSTMHSYRDLPLRLCELGLVHRHELSGVLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TPE  +     +   V Y  +IF       +  R E+  +G D  
Sbjct: 373 RVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYFYKIFGFEYFVELSTRPENS-MGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A      +  + + ++ P      D               A Y    D H   L
Sbjct: 431 WELATNA------LISALNRVNLPYKVNEGD--------------GAFYGPKIDFH---L 467

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G DG+ H  + +     G++ 
Sbjct: 468 KDSI-------GRTWQCGTIQLDFQMPERFEL----EYIGPDGEKHRPIMLHRVIYGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP ++ ++ I           + +Y RL +       D+
Sbjct: 517 RFIGILTEHFAGA---FPTWLAPVQVRVLPISDKHYAY---AQNVYGRLLENDIRAELDE 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E++G +   A L   P  +IVG K V    V ++ R  G    +SL E I 
Sbjct: 571 RNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKEGDLGAISLSEFIE 623


>gi|298384716|ref|ZP_06994276.1| threonine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298262995|gb|EFI05859.1| threonine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 646

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 165/432 (38%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQEFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S +F +F          D ++    +   + W     A  +   EK   
Sbjct: 410 --------VFRSMNFQNF---EAQISLRDKVNREKYIGSDDNWEKAEQAIIEACEEKGLP 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  PD VA   IS    +  +QV      K+Y ++
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPISEKFNEYAEQV------KMYLKM 571

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++   V  DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 572 HEIRAIV--DDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKYE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKILNEEVQN 641


>gi|90417311|ref|ZP_01225237.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90330896|gb|EAS46159.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 642

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 156/421 (37%), Gaps = 70/421 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G  E+  P +    LW +SG  D +G 
Sbjct: 255 MQEEAPGSIFWHPKGWSVYSAIEEYMRNKQREQGYQEIKTPQIVDMSLWEKSGHADKFGD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M  L   +D+     P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 DMFSL-QTDDRNYAVKPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSF----DLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGD 205
           R R F   DA+ F     + PE S+      F+ +L  ++   G   I  R  + P    
Sbjct: 374 RVRSFTQDDAHIFCTEEQIQPEVSQ------FIDFLHEVYADFGFDEIIYRLSTRPPERV 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S E    A+    Q   +K      +P E   +   I  +                   
Sbjct: 428 GSDEDWDRAEEALGQALDAKSLPWQELPGEGAFYGPKIEFS------------------- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKD------HYVQM 314
            L D              +G ++  GT    +S+P  + A +   DG        H   +
Sbjct: 469 -LKDC-------------IGRVWQLGTIQVDFSMPGRLDAQYVAEDGARKVPVMLHRAIL 514

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           GS+     R +  +IE  ++G    W   +AP +  + NI  A  +  ++  + +  +  
Sbjct: 515 GSF----ERFIGILIE-QYEGAFPFW---LAPEQAVVANITDAQAEYAQEVAKSLQNKGF 566

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +V CD+      E+IG +     +   P  ++VG        V ++ R       + LE+
Sbjct: 567 RVNCDL----RNEKIGFKIRGHSMQRVPFILVVGDNEKESRTVAVRTRDGKDLGSLPLEQ 622

Query: 434 V 434
           V
Sbjct: 623 V 623


>gi|193216459|ref|YP_001999701.1| prolyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193001782|gb|ACF06997.1| prolyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 476

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/444 (21%), Positives = 172/444 (38%), Gaps = 91/444 (20%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSY 89
           M +  SKG   + PL     DN+  I  E+        + +P L     L  E    + +
Sbjct: 28  MAYGSSKGAIIFKPLSFGIWDNIRKIADEKFKEKDVANVYLPLLIPEGLLQKEKDHLEGF 87

Query: 90  GKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDEL 143
             E+  + +   K +       PT E +  D FR+ I+S+ +LP  + Q    L++    
Sbjct: 88  NPELATVTEVGGKKLAEKFFIRPTSEVLFADFFRNEIESHNDLPLIYNQWVNVLRWEKTT 147

Query: 144 RPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            P    +R+REFL ++ ++    + E  K +Y +M   Y+ +       +IP+ A     
Sbjct: 148 NP---FLRTREFLWQEGHTMHANSAEAIKLTY-EMLNVYIDLVQ--NYLAIPVIA----- 196

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           G    HE            F   DF               +++ ++++            
Sbjct: 197 GNKTEHE-----------KFSGADFT--------------LTIEAMMK------------ 219

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                            + ++ G   Y    ++      FK  + +  +    S+GI + 
Sbjct: 220 ---------------DGKALQSGTSHYLAQNFTKAFEIAFKNKNNEQEFAYGTSWGI-ST 263

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFW 381
           R++ A+I +  D +GII P  +AP +I +I I A  D    +   +I  +L+KV   V  
Sbjct: 264 RLLGALIMTHGDDRGIIIPPKIAPVQIDIIEILAKKDPKVHEVALEITKKLNKVFA-VKL 322

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSK--------FVSDSKVE--------IKHRLTGI 425
           DD  +  G + A +++ G PL++ VG          FV   K+E        I+ R   I
Sbjct: 323 DDSDKSPGFKAANSEIHGTPLRIEVGPNDLINNQVTFVRRDKIEKISVPLDKIEARAKEI 382

Query: 426 REDMSLEEVINYASHRFSNNRPVL 449
            + +    +   AS R  NN  ++
Sbjct: 383 LDSIQ-SNLFTMASQRIKNNLEIV 405


>gi|303242609|ref|ZP_07329085.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302589866|gb|EFL59638.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 635

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 165/415 (39%), Gaps = 55/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I++   G   ++P G    + +    REE    G  E+  P + + DLW  SG +D Y +
Sbjct: 255 IYEEGPGFPFFMPKGMMLRNLLENYWREEHKARGYQEIRTPIILNEDLWHRSGHWDHYKE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      +++  + SYR+LP    ++ L  R EL     G+
Sbjct: 315 NMYFTKIDEGDYAI--KPMNCPGGMLVYKRKLHSYRDLPQRMAELGLVHRHELSGALHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           MR R F   DA+ F +TPE  K     +       ++  G K    +  R E   +G D 
Sbjct: 373 MRVRCFTQDDAHIF-MTPEQIKDEVLGVINLIDDFYNVFGFKYHVELSTRPEDS-MGSD- 429

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   +  E      +D +D    +   ++        + E   A Y    D H E 
Sbjct: 430 --------EQWEMATNALRDALD----ARKMNY-------KVNEGDGAFYGPKIDFHLE- 469

Query: 267 LFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM 322
             DS+        R  + G I   F    ++ L     + GADG+ H  V +     G++
Sbjct: 470 --DSI-------GRTWQCGTIQLDFQMPQRFDL----NYVGADGEKHRPVMIHRVVFGSI 516

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFW 381
               A++     G    +P  ++P ++ ++  I  H Q   +    + A L   G  V  
Sbjct: 517 ERFIAILTEHFAG---AFPTWLSPVQVKILPLIDKHHQFAGE----VKAALEAKGVRVEV 569

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +   A L   P  +++G K + +  V ++ R  G    M+L + +N
Sbjct: 570 DLRNEKIGYKIREAQLEKTPYMLVIGDKELENGAVAVRSRKDGDLGSMALNDFVN 624


>gi|56751513|ref|YP_172214.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|73919835|sp|Q5N1X6|SYT_SYNP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56686472|dbj|BAD79694.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 607

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/422 (19%), Positives = 163/422 (38%), Gaps = 44/422 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G   +  P L   DL+  SG + +Y ++M  + 
Sbjct: 220 GLPLWTPKGTILRSTLEDFLKQEQMKRGYQSVVTPHLARVDLFKVSGHWQNYREDMFPMM 279

Query: 98  DRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             +D+A       +  P +      I+++ ++SYR LP    +    +R E      G+ 
Sbjct: 280 AEDDEARGLEQGFVLKPMNCPFHIQIYKNELRSYRELPIRLAEFGTVYRYEQSGELGGLT 339

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F + D++ F + P+     +  +    L +F  L LK    R          S ++
Sbjct: 340 RVRGFTVDDSHLF-VRPDQLASEFLSVVDLILSVFKALNLKKFKARLS---FRDPESDKY 395

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I   D  E      K        +E    D  I +        A Y    D   +   D 
Sbjct: 396 IGSDDVWE------KAESAIQAAAETLGMDYFIGVGE-----AAFYGPKLDFIFQDALD- 443

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
                    R  ++G +      Y+LP      +   DG +   V +     G++  +  
Sbjct: 444 ---------REWQLGTV---QVDYNLPERFDLEYVAEDGSRQRPVMIHRAPFGSLERLIG 491

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G   +W   +AP +I L+ +    +   D C+++  +L  +G  V  D  G++
Sbjct: 492 ILIEEYAGDFPLW---LAPEQIRLLPVT---ETVLDYCQQVADQLRAIGVRVQVDCSGDR 545

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +G     A+    P+  ++G++      + I+ R TG    +++ ++    S   +   P
Sbjct: 546 LGKLIRNAEKAKIPVMAVIGAQEAESETLSIRTRATGDLGSLTVADLTKRLSSAIAEKLP 605

Query: 448 VL 449
            L
Sbjct: 606 HL 607


>gi|330951866|gb|EGH52126.1| threonyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 640

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 162/434 (37%), Gaps = 68/434 (15%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + Y L I +   RD      K+  R G+ H  + + G+  W P G      +   +R+ Q
Sbjct: 229 AAYILRIEEAEKRD----HRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQ 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW +SG + +Y   M      +    I  P +      +F   
Sbjct: 285 RENGYLEIKTPQVVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR LP    +     R+E      G+MR R F   DA+ F    E    + +  F+ 
Sbjct: 344 LKSYRELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIK 401

Query: 181 Y-LRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---P 233
             L ++   G K I ++  + P   +G D       L D  E+ +  + D    P    P
Sbjct: 402 LTLDVYADFGFKDIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQP 455

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT- 292
            E   +   I  +                    L D L             G ++  GT 
Sbjct: 456 GEGAFYGPKIEFS--------------------LKDCL-------------GRVWQCGTL 482

Query: 293 --KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              ++LP  +SA +   D  + + V +    +G+      ++   ++G    W   +AP 
Sbjct: 483 QLDFNLPIRLSAEYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPT 539

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  ++NI        D   ++   L++ G     D   E+IG +     LL  P  +++G
Sbjct: 540 QAVIMNITDKQA---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIG 596

Query: 408 SKFVSDSKVEIKHR 421
            + V    V ++ R
Sbjct: 597 DREVEMQTVAVRTR 610


>gi|255013835|ref|ZP_05285961.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|256839822|ref|ZP_05545331.1| prolyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|298375581|ref|ZP_06985538.1| proline--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|256738752|gb|EEU52077.1| prolyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|298268081|gb|EFI09737.1| proline--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 493

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  +      TF   +GK  Y    S+G+ + R++ A+I S  D  G+
Sbjct: 236 GKALQAGTSHFLGQNFGKAFDVTFIDKNGKSDYAWATSWGV-STRLIGALIMSHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I    +      EK   I A+L  +G  V +DD   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYRSAEQLAQISEKVAGIVAKLKALGISVKYDDADNKKPGWKFAE 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++ +G + + ++ +E+  R T  +E ++ + +  Y  +
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIEVMRRDTLEKETITCDGIEEYVKN 400



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +R+ I+SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYRNWIQSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKM 177
            ++ ++   T E ++    KM
Sbjct: 173 WQEGHTAHATREEAEIEAKKM 193


>gi|51598659|ref|YP_072847.1| prolyl-tRNA synthetase [Borrelia garinii PBi]
 gi|81825638|sp|Q661L6|SYP_BORGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51573230|gb|AAU07255.1| prolyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 488

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 170/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L     L  E    + +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYGFLEKEKDHIEGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEAVEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDLYKRF------------------------MEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+GI + R++ A+I    D KG+I P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGI-STRLIGALIMVHSDEKGLILPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVHALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRIEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTIMRR 365


>gi|289673298|ref|ZP_06494188.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
 gi|330898079|gb|EGH29498.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 640

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 162/434 (37%), Gaps = 68/434 (15%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + Y L I +   RD      K+  R G+ H  + + G+  W P G      +   +R+ Q
Sbjct: 229 AAYILRIEEAEKRD----HRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQ 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW +SG + +Y   M      +    I  P +      +F   
Sbjct: 285 RENGYLEIKTPQVVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR LP    +     R+E      G+MR R F   DA+ F    E    + +  F+ 
Sbjct: 344 LKSYRELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIK 401

Query: 181 Y-LRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---P 233
             L ++   G K I ++  + P   +G D       L D  E+ +  + D    P    P
Sbjct: 402 LTLDVYADFGFKDIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQP 455

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT- 292
            E   +   I  +                    L D L             G ++  GT 
Sbjct: 456 GEGAFYGPKIEFS--------------------LKDCL-------------GRVWQCGTL 482

Query: 293 --KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              ++LP  +SA +   D  + + V +    +G+      ++   ++G    W   +AP 
Sbjct: 483 QLDFNLPIRLSAEYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPT 539

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  ++NI        D   ++   L++ G     D   E+IG +     LL  P  +++G
Sbjct: 540 QAVIMNITDKQA---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIG 596

Query: 408 SKFVSDSKVEIKHR 421
            + V    V ++ R
Sbjct: 597 DREVEMQTVAVRTR 610


>gi|260170790|ref|ZP_05757202.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315919124|ref|ZP_07915364.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313692999|gb|EFS29834.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 646

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 164/432 (37%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQEFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   PE  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPEQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S DF +F          D ++    +   + W     A  +   EK   
Sbjct: 410 --------VFRSMDFQNF---EAQISLRDKVNREKYIGSDDNWEKAEQAIIEACAEKGLP 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  P+ V    IS    +  +QV      K+Y ++
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPEQVVILPISEKFNEYAEQV------KMYLKI 571

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++   V  DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 572 HEIRAIV--DDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKFE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKILNEEVQN 641


>gi|119953193|ref|YP_945402.1| prolyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|119861964|gb|AAX17732.1| prolyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 501

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 156/395 (39%), Gaps = 71/395 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG    +P G    + + +I+  +   TG      P L   + L  E      +  E+  
Sbjct: 45  KGCMVIMPYGYAIWEQIKSILDNKFKETGHENAYFPLLIPYEFLEREKEHVKGFSPELAV 104

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +   + ++  PT E ++ +++   IKSYR+LP    Q     R E R R   +R
Sbjct: 105 ITTAGGEELAEPLVLRPTSETIIWNMYSKWIKSYRDLPVKINQWANIVRWEKRTR-PFLR 163

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EFL ++ ++   T    +     +F+  L ++ R                        
Sbjct: 164 TTEFLWQEGHTAHET--AGEALEETLFI--LNLYKRF----------------------- 196

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D     VFC +        +E   F   +S  +I                    ++L
Sbjct: 197 -IEDYLAIPVFCGQK-------TEREKFAGAVSTYTI--------------------EAL 228

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            ++K+     ++ G   Y G  ++      F+   G+  YV   S+G+ + R++ A+I  
Sbjct: 229 MQDKK----ALQAGTSHYLGLNFAKAFDVKFQNKKGEMDYVFATSWGV-STRLIGALIMV 283

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACE---KIYARLSKVGCDVFWD-DMGE 386
             D KG+I P  +AP +I ++ I K  D+V +   E    I+  L +    V  D D+  
Sbjct: 284 HSDSKGLILPPKIAPIEIIIVPIFKRDDEVNKKIIEYATTIFNILKEAKFRVELDRDIKN 343

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G +FA  +L G P+++ VGS  +    V +  R
Sbjct: 344 SPGFRFAAVELKGIPIRIEVGSNDILMDCVTVARR 378


>gi|226355442|ref|YP_002785182.1| prolyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|226317432|gb|ACO45428.1| putative Proline--tRNA ligase (prolyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 499

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/407 (18%), Positives = 153/407 (37%), Gaps = 69/407 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G    +N+   + +    TG   +  PTL      + E+   + +  E+  ++    +
Sbjct: 56  PYGSALWENIVRWLDDRFKATGHESLVFPTLIPMGFIMKEADHVEGFAPELFTVSKIGTE 115

Query: 103 AM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +    +  PT E ++  ++   + SYR+LPF  YQ    FR ELR +   +R+ EF   
Sbjct: 116 ELAEPYVMRPTSETIIGHMWSGWLNSYRDLPFLHYQWGSVFRAELRTK-AFLRTSEFFWH 174

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++       ++    +M                           D+ HEF        
Sbjct: 175 EGHTAHADEPEARGEVRQML--------------------------DIYHEFC------- 201

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 +D +  P+         +    +  E++    A  S            E     
Sbjct: 202 ------RDVLALPV---------VRGEKTASERFAGAVATYS-----------IEGMMRD 235

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  +S      F+  + K+ Y    S+ I + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHYLGQNFSRAFDVKFQTREQKEEYAHTTSWAISS-RIIGAIIMTHGDDFGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
           I P  +AP ++ +I +   D         E++   L  +G  V  D   G   G ++   
Sbjct: 295 IMPPRIAPIQVVVIPVGRKDNFDAMVQEAEQLAGELRALGLRVKVDKRDGVTNGFKYNDW 354

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +L G P+++ +G + +    V +K R +  +E +   E ++  + R 
Sbjct: 355 ELKGVPVRIELGPRDLEQGVVVVKGRNSEEKETLERAEAVSGMTARL 401


>gi|78060370|ref|YP_366945.1| threonyl-tRNA synthetase, class IIA [Burkholderia sp. 383]
 gi|77964920|gb|ABB06301.1| Threonyl-tRNA synthetase, class IIa [Burkholderia sp. 383]
          Length = 477

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 22/202 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKG--IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D  I  +KL    G+ HQ  +G  +  W P G      +   +R    R G  E+  P L
Sbjct: 71  DHRILGNKL----GLFHQQQEGPGMVFWHPRGWALYRVLEDYVRMRMRRAGFREIRTPQL 126

Query: 75  QSADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHI 122
            +  LW  SG +D +G +M  L DR            +  A+   P        +F   +
Sbjct: 127 LARSLWERSGHWDKFGSQMYALPDRSPIEPSADVDHDDALALCLKPMSCPCHVQVFNQGL 186

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  + +     RDE      G+ R+R F+  DA+ F    +    +    F + 
Sbjct: 187 RSYRELPIRYSEFGACHRDEPSGSLEGLKRTRAFVQDDAHVF--CTKSQIENEVARFCNL 244

Query: 182 LR-IFHRLGLKSIPMRAESGPI 202
           LR ++  LG  S+ +   + P+
Sbjct: 245 LRAVYADLGFSSVTVALATRPM 266


>gi|237716078|ref|ZP_04546559.1| threonyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262407690|ref|ZP_06084238.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294643798|ref|ZP_06721596.1| threonine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294808458|ref|ZP_06767211.1| threonine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229443725|gb|EEO49516.1| threonyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262354498|gb|EEZ03590.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292640887|gb|EFF59107.1| threonine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294444386|gb|EFG13100.1| threonine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 646

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 164/432 (37%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQEFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   PE  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPEQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S DF +F          D ++    +   + W     A  +   EK   
Sbjct: 410 --------VFRSMDFQNF---EAQISLRDKVNREKYIGSDDNWEKAEQAIIEACAEKGLP 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  P+ V    IS    +  +QV      K+Y ++
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPEQVVILPISEKFNEYAEQV------KMYLKI 571

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++   V  DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 572 HEIRAIV--DDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKFE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKILNEEVQN 641


>gi|160883804|ref|ZP_02064807.1| hypothetical protein BACOVA_01776 [Bacteroides ovatus ATCC 8483]
 gi|237722137|ref|ZP_04552618.1| threonyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|299149166|ref|ZP_07042227.1| threonine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|156110889|gb|EDO12634.1| hypothetical protein BACOVA_01776 [Bacteroides ovatus ATCC 8483]
 gi|229447947|gb|EEO53738.1| threonyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|298512833|gb|EFI36721.1| threonine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 646

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 164/432 (37%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQEFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   PE  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPEQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S DF +F          D ++    +   + W     A  +   EK   
Sbjct: 410 --------VFRSMDFQNF---EAQISLRDKVNREKYIGSDDNWEKAEQAIIEACAEKGLP 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  P+ V    IS    +  +QV      K+Y ++
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPEQVVILPISEKFNEYAEQV------KMYLKI 571

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++   V  DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 572 HEIRAIV--DDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKFE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKILNEEVQN 641


>gi|116333673|ref|YP_795200.1| threonyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269640|sp|Q03RK3|SYT_LACBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116099020|gb|ABJ64169.1| Threonyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 647

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 168/417 (40%), Gaps = 40/417 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+ +SG +  Y ++M    
Sbjct: 262 GLPYWMPNGATIRRTIERYIIDKEVSNGYQHVYTPVLANLDLYKQSGHWAHYREDMFPPM 321

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      ++  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLELRPMNCPSHIQVYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + PE  +  +  +    ++++    +K    R         LS+      D
Sbjct: 382 TLNDGHTF-VAPEQIQDEFKSILDLMVKVYADFDIKDYTFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     +      D + L  +  E   A Y    DV  +    +L   
Sbjct: 427 PKNTEKYFDDDEMWNNAQAMLKGAMDDLGLPYVEAEGEAAFYGPKLDVQTKT---ALGNE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + GADG++H   M   G +  M    A +   +
Sbjct: 484 ETLSTIQLD----FMLPERFDL----HYVGADGEEHRPVMIHRGLVSTMERFTAYLTEIY 535

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++++I +           +K+ A L      V  D  GE++G    
Sbjct: 536 KGAFPTW---LAPKQVTIIPVSEEKHGAY--ADKLAAELKAADIRVNVDKRGEKMGYLIR 590

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK----HRLTGIREDMSLEEVI-NYASHRFSNN 445
            A     P  ++VG   +S+  V ++    ++ T +  D  ++E++ + AS+   N+
Sbjct: 591 DAQTHKIPYTLVVGEDEMSNGSVSVRKYGENQTTSMSSDAFVKEILADIASYSREND 647


>gi|294508573|ref|YP_003572632.1| Prolyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294344902|emb|CBH25680.1| Prolyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 490

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   D ++ YV   S+G+ + R++  +I +  D +G+
Sbjct: 232 GKALQAGTSHFLGQNFAKAFDCTFTNEDNEEEYVWATSWGV-STRLIGGLIMTHSDDQGL 290

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  +AP ++ ++ +   D       + CE++  RL   G  V  D    Q  G +F+ 
Sbjct: 291 VLPPKLAPHQVVIVPLFFDDDQEGPVMETCERLQERLEDYGIRVKMDQNHTQSPGWRFSE 350

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +L G PL++ +G + + +  VE+  R T  +E
Sbjct: 351 HELRGVPLRLAIGPRDLENDNVEMARRDTQEKE 383



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           I  PT E ++ D +   I+SYR+LP  + Q     R E+RPR   +R+ EFL ++ ++
Sbjct: 118 IVRPTSETIIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL-FLRTAEFLWQEGHT 174


>gi|330943371|gb|EGH45740.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 640

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 162/434 (37%), Gaps = 68/434 (15%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + Y L I +   RD      K+  R G+ H  + + G+  W P G      +   +R+ Q
Sbjct: 229 AAYVLRIEEAEKRD----HRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQ 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW +SG + +Y   M      +    I  P +      +F   
Sbjct: 285 RENGYLEIKTPQVVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR LP    +     R+E      G+MR R F   DA+ F    E    + +  F+ 
Sbjct: 344 LKSYRELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIK 401

Query: 181 Y-LRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---P 233
             L ++   G K I ++  + P   +G D       L D  E+ +  + D    P    P
Sbjct: 402 LTLDVYADFGFKDIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQP 455

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT- 292
            E   +   I  +                    L D L             G ++  GT 
Sbjct: 456 GEGAFYGPKIEFS--------------------LKDCL-------------GRVWQCGTL 482

Query: 293 --KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              ++LP  +SA +   D  + + V +    +G+      ++   ++G    W   +AP 
Sbjct: 483 QLDFNLPIRLSAEYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPT 539

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  ++NI        D   ++   L++ G     D   E+IG +     LL  P  +++G
Sbjct: 540 QAVIMNITDKQA---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIG 596

Query: 408 SKFVSDSKVEIKHR 421
            + V    V ++ R
Sbjct: 597 DREVEMQTVAVRTR 610


>gi|197294712|ref|YP_001799253.1| prolyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|259511611|sp|B1VAN9|SYP_PHYAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171854039|emb|CAM12012.1| Prolyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 474

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      F+  D ++ YV   S+G+ + R++ A+I    D +G+
Sbjct: 224 GQALQAGTSHYLGTNFAQSFQIQFQDQDHQNKYVHQTSWGV-STRLIGALIMVHSDDEGL 282

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           I P  +AP +I +I ++  +++ +   +KI+  L K    V  D   +  G +F+  +L 
Sbjct: 283 ILPPYIAPIQIVIIPLQPKNELVQAEAKKIFDDL-KTTYRVHLDLQNKTPGWKFSQYELK 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL++ +G++ ++  +V I  R
Sbjct: 342 GVPLRIEIGARDLAQGEVTIFQR 364



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP G    +N+   +  E  +TG   +  P + S  L+  E      +  E   
Sbjct: 37  KGFIIYLPYGYALWENIQKYLNYEFQKTGHQNVYFPLVFSEKLFQKEKDHIQGFSPEAAM 96

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI--QLKFRDELRPRFGV 149
           +     K     ++  PT E + +  +   I SYR+LP  + Q    +++    +P    
Sbjct: 97  ITSTGQKELFEKLVIRPTSEVLFSQYYAKIISSYRDLPKLYNQFCNVVRWEKATKP---F 153

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           +R +EFL ++ ++   T    K + ++   + ++++ +LG
Sbjct: 154 LRGKEFLWQEGHTVHAT---EKEALDQTLFA-IQLYEKLG 189


>gi|330800299|ref|XP_003288175.1| threonyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325081805|gb|EGC35308.1| threonyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 713

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 180/430 (41%), Gaps = 50/430 (11%)

Query: 16  RDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++A +  H+ + R   +   H  S G   +LP G +  + +   IR E +  G  E+  P
Sbjct: 313 KEAALRDHRNIGRAQELFFFHPFSPGSAFFLPHGTRIYNKLVDFIRAEYHNRGFSEVISP 372

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           ++ S  LW +SG +  Y + M  +   + +     P +      +F S  +SYR LP  F
Sbjct: 373 SVFSQKLWEQSGHWAKYSENMFNIP-VDKETFSLKPMNCPGHCLMFGSRQRSYRELPLRF 431

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+EL     G+ R R+F   DA+ F  T +  ++  N        ++   G +
Sbjct: 432 ADFGVLHRNELAGALTGLTRVRKFQQDDAHIF-CTVDMIENEINSCLEFMQHVYGIFGFE 490

Query: 192 ---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
              ++  R E+    G++S          E +    K    F  P +    D        
Sbjct: 491 FQLNLSTRPEN--FLGEISQ-------WNEAEKSLEKALNRFGKPWQLNPGDG------- 534

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+   +++D L    + +   ++      F  +Y      +    D K
Sbjct: 535 -----AFYGPKIDI---QIYDCLKRAHQCATIQLDFQLPIRFDLEYQ-----SDDATDVK 581

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEK 367
              V +    +G++  + A++     GK   WP  V+P +  ++ + K H++       K
Sbjct: 582 KRPVIIHRAILGSVERMMAILMEHTAGK---WPFWVSPRQAIVVTVAKQHNEYGH----K 634

Query: 368 IYARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +  ++S++G  CD+  D+  + IG +   A L  +   ++VG + + ++KV ++ R   +
Sbjct: 635 VAKQISELGYYCDI--DESDKTIGKKVREAQLAQYNYILVVGQEEIDNNKVNVRTRDNVV 692

Query: 426 REDMSLEEVI 435
           R  +S+EE++
Sbjct: 693 RGSISVEELV 702


>gi|293372832|ref|ZP_06619210.1| threonine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|298480838|ref|ZP_06999033.1| threonine--tRNA ligase [Bacteroides sp. D22]
 gi|292632207|gb|EFF50807.1| threonine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|295085227|emb|CBK66750.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Bacteroides
           xylanisolvens XB1A]
 gi|298272861|gb|EFI14427.1| threonine--tRNA ligase [Bacteroides sp. D22]
          Length = 646

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 164/432 (37%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQEFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   PE  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPEQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S DF +F          D ++    +   + W     A  +   EK   
Sbjct: 410 --------VFRSMDFQNF---EAQISLRDKVNREKYIGSDDNWEKAEQAIIEACAEKGLP 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  P+ V    IS    +  +QV      K+Y ++
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPEQVVILPISEKFNEYAEQV------KMYLKI 571

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++   V  DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 572 HEIRAIV--DDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKFE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKILNEEVQN 641


>gi|261406470|ref|YP_003242711.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261282933|gb|ACX64904.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 636

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 159/411 (38%), Gaps = 45/411 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G    + +    R  Q      E+  P + +  LW  SG +D Y 
Sbjct: 255 MFSEEAPGMPFFLPNGMIIRNELEQFARGLQFHRDYDEVRTPLMMNKRLWEMSGHWDHY- 313

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           K+ +     ++      P +      ++++ + SYR LP    +     R E      G+
Sbjct: 314 KDNMYFTQVDETEYALKPMNCPGHMLVYKNSLHSYRELPIRISEFGQVHRHEFSGALNGM 373

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F + P+  +    ++     R++   G +   +   + P     S E
Sbjct: 374 MRVRTFCQDDAHIF-VRPDQIQEEIKQVIDFISRVYQVFGFEYT-IELSTRPEDSMGSEE 431

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+T   QV    D +  P      D               A Y    D H   + D
Sbjct: 432 LWEQAETSLQQVL---DQLGLPYRINEGD--------------GAFYGPKIDFH---ILD 471

Query: 270 SLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           SL        R  + G I   F F  K+ L    ++ G D + H  V +     G++   
Sbjct: 472 SL-------KRSWQCGTIQLDFQFPEKFDL----SYIGEDNQKHRPVVIHRAVFGSIERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP ++ +I +  H     D   K+  RL   G  V  D   
Sbjct: 521 IGILTEHYGGAFPMW---LAPVQVMIIPVSDH---YIDYSLKVKKRLENAGIRVNVDVRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E++G +   A LL  P  +++G K +    V ++ R  G   ++++++VI 
Sbjct: 575 EKLGYKIREAGLLKTPYTLVLGEKEMDSDHVSVRKRGEGELGEIAIDQVIE 625


>gi|81301415|ref|YP_401623.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|123769177|sp|Q31JY3|SYT_SYNE7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81170296|gb|ABB58636.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           elongatus PCC 7942]
          Length = 604

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/422 (19%), Positives = 163/422 (38%), Gaps = 44/422 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G   +  P L   DL+  SG + +Y ++M  + 
Sbjct: 217 GLPLWTPKGTILRSTLEDFLKQEQMKRGYQSVVTPHLARVDLFKVSGHWQNYREDMFPMM 276

Query: 98  DRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             +D+A       +  P +      I+++ ++SYR LP    +    +R E      G+ 
Sbjct: 277 AEDDEARGLEQGFVLKPMNCPFHIQIYKNELRSYRELPIRLAEFGTVYRYEQSGELGGLT 336

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F + D++ F + P+     +  +    L +F  L LK    R          S ++
Sbjct: 337 RVRGFTVDDSHLF-VRPDQLASEFLSVVDLILSVFKALNLKKFKARLS---FRDPESDKY 392

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I   D  E      K        +E    D  I +        A Y    D   +   D 
Sbjct: 393 IGSDDVWE------KAESAIQAAAETLGMDYFIGVGE-----AAFYGPKLDFIFQDALD- 440

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
                    R  ++G +      Y+LP      +   DG +   V +     G++  +  
Sbjct: 441 ---------REWQLGTV---QVDYNLPERFDLEYVAEDGSRQRPVMIHRAPFGSLERLIG 488

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G   +W   +AP +I L+ +    +   D C+++  +L  +G  V  D  G++
Sbjct: 489 ILIEEYAGDFPLW---LAPEQIRLLPVT---ETVLDYCQQVADQLRAIGVRVQVDCSGDR 542

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +G     A+    P+  ++G++      + I+ R TG    +++ ++    S   +   P
Sbjct: 543 LGKLIRNAEKAKIPVMAVIGAQEAESETLSIRTRATGDLGSLTVADLTKRLSSAIAEKLP 602

Query: 448 VL 449
            L
Sbjct: 603 HL 604


>gi|229077749|ref|ZP_04210378.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
 gi|228705571|gb|EEL57928.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
          Length = 476

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKGTGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQL 376


>gi|320333471|ref|YP_004170182.1| threonyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319754760|gb|ADV66517.1| threonyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 649

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 153/393 (38%), Gaps = 44/393 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G    + +   +RE+Q   G   +  P + + +L+  SG Y +Y      
Sbjct: 266 GKGLPMWLPNGTILREELTRFLREQQFARGYQGVVTPNIGNLELYKTSGHYQNYSDSNFS 325

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +D+  +  P +      I+ S  +SYR+LP    +    +R E      G+ R R 
Sbjct: 326 PITVDDEQYMLKPMNCPHHVRIYASKPRSYRDLPVRLAEFGTVYRYEQSGELNGLTRVRG 385

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  +  +    + +    G+  +  R              +   
Sbjct: 386 FTQDDAHLF-CRPDQLKAEFLNVLDLTVLVLRTFGMNDVRFR--------------VGTR 430

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA---ATSDVHNEKLFDSL 271
           D   T+   ++D       + N     II     VE+   PY+     +  +  KL   +
Sbjct: 431 DPENTKYVGAED-------NWNAAERQII---EAVEEVGLPYSIEPGDAAFYGPKLDFVV 480

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
              + V  R  ++G I      Y+LP     ++ G DG DH  + +     G++     +
Sbjct: 481 ---RDVLGREWQLGTI---QVDYNLPERFDISYVGEDGADHRPIMIHRAPFGSLERFVGI 534

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   +AP ++++I I         A E   A L   G     DD   ++
Sbjct: 535 LIEHYGGDFPLW---LAPRQVAIIPIADRHNEYAYALE---AELRAAGLRTEVDDSSNRM 588

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            ++   A+L   P+ +IVG K     +V ++ R
Sbjct: 589 NAKVRAAELSKIPVMLIVGDKEQEGRQVSVRER 621


>gi|312870359|ref|ZP_07730484.1| threonine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311094060|gb|EFQ52379.1| threonine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 600

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/403 (20%), Positives = 155/403 (38%), Gaps = 35/403 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I + +   G   +  P L + D +  SG ++ Y  +M    
Sbjct: 216 GLPYWMPKGATIRRTIERYIIDREVADGYEHVYTPVLMNLDAYKTSGHWEHYRDDMFPPM 275

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 276 DMGDGEMLEIRPMNCPSHIQIYKHHIRSYRDLPMRIAELGMMHRYEKSGALSGLQRVREM 335

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R              + L D
Sbjct: 336 TLNDGHTF-VAVDQIRDEFAKILNLIMDVYKDFDITDYSFR--------------LSLRD 380

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               + +   D M D          DD+       E   A Y    D+  +    +L  +
Sbjct: 381 PKNKEKYYGNDEMWDESQKLLKAAMDDLNLDYYEAEGEAAFYGPKLDIQTKT---ALGND 437

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++      FG  Y         G DGK+H   M   GI G M    A +   +
Sbjct: 438 ETMSTIQLDFMQPDRFGLSYV--------GKDGKEHMPVMIHRGIVGTMERFVAYLTEIY 489

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +   ++   D  +K+  ++      V  DD  E++G +  
Sbjct: 490 KGAFPTW---LAPEQVHIIPVS--EEKHGDYAQKLADKMKAAQIRVVVDDRNEKMGYKIR 544

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            A     P  ++VG   V ++ V ++      +  MS ++ +N
Sbjct: 545 EAQTQKVPYTLVVGDDEVKNNAVSVRKYGEDAQNSMSQDDFMN 587


>gi|255034032|ref|YP_003084653.1| prolyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254946788|gb|ACT91488.1| prolyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 491

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 85/170 (50%), Gaps = 5/170 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F+  +GK  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 233 GKALQAGTSHFLGQNFANAFDVKFQDKEGKLDYVWGTSWGV-STRLMGALIMAHSDDAGL 291

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+      EK   I   L K+G  V +D     + G +FA 
Sbjct: 292 VLPPKLAPIQVVIVPIYRNDEQLAQISEKVAEITKDLKKLGISVKYDSSDNAKPGFKFAE 351

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +L G P+++ +G + + +  VE+  R T  +E +S+  +  Y  +  ++
Sbjct: 352 YELKGVPVRLAMGGRDLENGTVEVARRDTKTKETVSVAGIAAYVQNLLND 401



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E V+   +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETVIWSTYKNWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + +     +M   Y
Sbjct: 174 HTAHATAQEAIAETKQMLEVY 194


>gi|326804116|ref|YP_004321934.1| proline--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650465|gb|AEA00648.1| proline--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 484

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      +   + +  Y    S+G+ + R++  +I +  D KG+
Sbjct: 221 TKSVQAGTSHYLGTNFAEAFDIKYLNTENQHVYAHTSSWGV-STRLIGTMIMAHGDEKGV 279

Query: 339 IWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           ++P  +AP +I+LI   N+K + +V     E I   L   G   + DD     G ++  A
Sbjct: 280 VFPPKMAPIQIALIPVGNVKKNPEVLT-RLEAIEKDLQAAGYSTYLDDSNNSAGYKYNEA 338

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++ G PL++  G + + + +  IK R    +E ++L+++++
Sbjct: 339 EVKGVPLRIEFGPRDMENGQCMIKMRDLEDKEAVNLDDLLD 379


>gi|282855610|ref|ZP_06264924.1| threonine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282586540|gb|EFB91794.1| threonine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 640

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 153/411 (37%), Gaps = 70/411 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H    G   + P G   ++ + +  R      G  E   P + + DLW+ SG +D Y +
Sbjct: 251 LHNEGVGFPFFHPKGMVVMNKLMSFWRRLHFLNGYTEARTPQILNRDLWLRSGHWDHY-R 309

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D      P +      I+++   SYR LP    ++ +  R EL     G+M
Sbjct: 310 ENMYFTTIDDIPHAIKPMNCPGGIIIYKTSKHSYRELPIRMGELGVVHRHELSGALHGLM 369

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-HRLGLK---SIPMRAESGPIGGDL 206
           R R F   DA+ F  TPE  K     +      ++ H  G K    +  R E+  +G D 
Sbjct: 370 RVRCFTQDDAHHF-CTPEQIKDEVKLIMKLNDYVYTHVFGFKYHVELSTRPENS-MGSDE 427

Query: 207 SHEFI------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             E         LA+TG   V    D                           A Y    
Sbjct: 428 LWEIAENALSETLAETGTPYVLNPGD--------------------------GAFYGPKI 461

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQM 314
           D H E                  +G  +  GT    +++P     T+ GADG++H  V +
Sbjct: 462 DFHLEDC----------------IGRTWQCGTIQLDFTMPEKFDMTYVGADGREHRPVML 505

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
               +G++     ++  ++ G    W   +AP ++ L+ +   H    R+  EK    L 
Sbjct: 506 HRTILGSIERFMGILIENYAGAFPYW---LAPVQVKLLAVSDDHLPYAREVAEK----LQ 558

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +   V  D   E++G +   A +   P  +++G K V    V ++ R  G
Sbjct: 559 NLNVRVEIDRRDEKLGRKIRDAQMEKVPYMLVIGDKEVEARTVAVRDRAKG 609


>gi|288870320|ref|ZP_06113698.2| proline--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288867624|gb|EFC99922.1| proline--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 479

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 129/329 (39%), Gaps = 67/329 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D +   I SYR+LP  + Q    +++    RP    +RSREFL ++ ++   
Sbjct: 116 PTSETLFCDFYARDIHSYRDLPKVYNQWCSVVRWEKTTRP---FLRSREFLWQEGHTAHA 172

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E ++    +M   Y                                AD      FC +
Sbjct: 173 TAEDAQARTEQMLNLY--------------------------------AD------FCEE 194

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                 I  + TD +             A Y   + +H+ K   S              G
Sbjct: 195 VLAMPVIRGQKTDKEKFAGAE-------ATYTIEALMHDGKALQS--------------G 233

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               FG  ++      +   + K  YV   S+G+ + R++  +I    D  G++ P  +A
Sbjct: 234 TSHNFGDGFAKAFEIQYSDKENKLQYVHQTSWGM-STRLIGGIIMVHGDDNGLVLPPRIA 292

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ ++ I+   +   +   +I + LS  G  V  DD  +  G +FA +++ G P++V 
Sbjct: 293 PVQVMIVPIQQAKEGVLEKAAEIKSVLS--GYRVKVDDTDKSPGWKFAESEMRGIPVRVE 350

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K +   +  +  R T  +  +SLEE+
Sbjct: 351 IGPKDIEAGQAILVRRDTHEKISVSLEEI 379


>gi|253682125|ref|ZP_04862922.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561837|gb|EES91289.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 637

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 169/416 (40%), Gaps = 54/416 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +   G   + P G    + +    RE   + G  E+  P + + +LW +SG +D Y +
Sbjct: 255 LKEEGPGFPFFYPKGMTLRNTLENYWREMHEKAGYGEIRTPIILNENLWHQSGHWDHYKE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      +++S + SYR LP    ++ L  R E      G+
Sbjct: 315 NMYFTKIDGEDYAI--KPMNCPGSILVYKSDLHSYRELPIRLGELGLVHRHEYSGALHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYN--KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           MR R F   DA+ F    + +       KM  ++  +F       +  R E   +G D  
Sbjct: 373 MRVRNFTQDDAHIFMTKEQITSEILGVIKMIDNFYSLFGFEYFVELSTRPEDS-MGSDED 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A T       ++  +++ I   +  F                Y    D H   L
Sbjct: 432 WE----AATNGLVKALNEAGLEYKINEGDGAF----------------YGPKIDFH---L 468

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMR 323
            D L        R  + G I   F    ++ L    ++ GADG+ H   M    I G++ 
Sbjct: 469 RDCL-------GRTWQCGTIQLDFQMPERFDL----SYVGADGEKHRPVMAHRVIFGSIE 517

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI   +Q+  + C++I   L + G  V  D 
Sbjct: 518 RFIGILTEHYAGA---FPTWLAPVQVKIMNI-TDNQI--EYCKEIEKTLKENGIRVELDL 571

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             E+IG +   A L   P  +++G K ++++ + ++ R  G   D+   +++++ +
Sbjct: 572 RNEKIGYKIREAQLQKIPYMLVLGDKEMNENTIAVRSRKQG---DLGAMQLVDFVA 624


>gi|15604092|ref|NP_220607.1| threonyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|2501061|sp|O05947|SYT_RICPR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2073475|emb|CAA72469.1| threonyl-tRNA synthetase [Rickettsia prowazekii]
 gi|3860783|emb|CAA14684.1| THREONYL-TRNA SYNTHETASE (thrS) [Rickettsia prowazekii]
 gi|292571818|gb|ADE29733.1| Threonyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 635

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + ++G+  W   G    + +   IR++  + G IE+  P L    LW  SG +  +  +
Sbjct: 256 QEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNGYIEVKTPVLVDKSLWEASGHWAKFRCD 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L + +DK +   P +      IF+  IKSYR+LP    +  L  R+E      G+MR
Sbjct: 316 MFTL-ETDDKTLALKPMNCPCHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMR 374

Query: 152 SREFLMKDAYSF 163
            R  +  DA+ F
Sbjct: 375 VRSLVQDDAHIF 386


>gi|229068144|ref|ZP_04201451.1| Prolyl-tRNA synthetase 2 [Bacillus cereus F65185]
 gi|228714958|gb|EEL66826.1| Prolyl-tRNA synthetase 2 [Bacillus cereus F65185]
          Length = 476

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  +I E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVIDEKLKGTGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQAHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|323484406|ref|ZP_08089772.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
 gi|323402184|gb|EGA94516.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
          Length = 645

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 163/411 (39%), Gaps = 69/411 (16%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+H    G   +LP G +  + +    R+   + G +E+S P + +  LW  SG +D Y 
Sbjct: 255 MMHDAGPGFPFFLPKGMELKNTLLEYWRQIHKKAGYVEISTPVILNRKLWETSGHWDHYK 314

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +       + S  +SYR+LP    ++ L  R E   +  G
Sbjct: 315 DNMYTTVIDEEDYAI--KPMNCPGGVLAYASEPRSYRDLPLRMGELGLVHRHEKSGQLHG 372

Query: 149 VMRSREFLMKDAYSFDLTPE-------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +MR R F   DA+ F +TP+       G  H  N+++  +   +H + L + P  +    
Sbjct: 373 LMRVRCFTQDDAHIF-MTPDQIKDEIKGVAHLINEVYSLFGFKYH-VELSTRPEDSMGSD 430

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATS 260
              +++ E + LA                          D + L+ +V +   A Y    
Sbjct: 431 EDWEMATEGLRLA-------------------------LDELGLDYVVNEGDGAFYGPKI 465

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQM 314
           D H E   DS             +G  +  GT    + LP      + GADG+ H  + +
Sbjct: 466 DFHLE---DS-------------IGRTWQCGTIQLDFQLPQRFELEYTGADGEKHRPIMI 509

Query: 315 GSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                G++ R +  +IE         +P  +AP ++ ++ I   D+   D  + +   L 
Sbjct: 510 HRVAFGSIERFIGILIEHFAGA----FPTWLAPVQVKVLPIS--DKYA-DYAKTVLEELE 562

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + G     D   E+IG +   A     P  ++VG K   +  V ++ R  G
Sbjct: 563 EAGIRAELDTRSEKIGYKIREAQTQKIPYMLVVGQKEEEEGNVSVRSRFAG 613


>gi|323692417|ref|ZP_08106653.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
 gi|323503557|gb|EGB19383.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
          Length = 645

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 158/407 (38%), Gaps = 61/407 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+H    G   +LP G +  + +    R+   + G +E+S P + +  LW  SG +D Y 
Sbjct: 255 MMHDAGPGFPFFLPKGMELKNTLLEYWRQIHKKAGYVEISTPVILNRKLWETSGHWDHYK 314

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +       + S  +SYR+LP    ++ L  R E   +  G
Sbjct: 315 DNMYTTVIDEEDYAI--KPMNCPGGVLAYASEPRSYRDLPLRMGELGLVHRHEKSGQLHG 372

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           +MR R F   DA+ F +TP+  K     +      ++   G K    +  R E   +G D
Sbjct: 373 LMRVRCFTQDDAHIF-MTPDQIKDEIKGVAHLINEVYSLFGFKYHVELSTRPEDS-MGSD 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHN 264
              E   +A  G                       D + L+ +V +   A Y    D H 
Sbjct: 431 EDWE---MATEGLRSAL------------------DELGLDYVVNEGDGAFYGPKIDFHL 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
           E   DS             +G  +  GT    + LP      + GADG+ H  + +    
Sbjct: 470 E---DS-------------IGRTWQCGTIQLDFQLPQRFELEYTGADGEKHRPIMIHRVA 513

Query: 319 IGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            G++ R +  +IE         +P  +AP ++ ++ I   D+   D  + +   L + G 
Sbjct: 514 FGSIERFIGILIEHFAGA----FPTWLAPVQVKVLPIS--DKYA-DYAKTVLEELEEAGI 566

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               D   E+IG +   A     P  ++VG K   +  V ++ R  G
Sbjct: 567 RAELDTRSEKIGYKIREAQTQKIPYMLVVGQKEEEEGNVSVRSRFAG 613


>gi|319938817|ref|ZP_08013181.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811867|gb|EFW08133.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 650

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 165/411 (40%), Gaps = 47/411 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I + +   G   +  P L S +L+  SG ++ Y ++M   
Sbjct: 261 QGLPFWLPDGATIRRIVERYITDREVNDGYQHVYTPPLASVELYKTSGHWEHYQEDMFPP 320

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D +  +  P +     +++++H+ SYR LP    ++ +  R E      G+ R RE
Sbjct: 321 MDMGDGEQFVLRPMNCPHHIEVYKNHVHSYRELPIRIAELGMMHRFEKSGALSGLQRVRE 380

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D++ F + PE  +  +  +    + ++    +     R              +   
Sbjct: 381 MTLNDSHLF-VMPEQIQEEFKHVLDLMIDVYKDFNITDYRFR--------------LSYR 425

Query: 215 DTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           D  +   +   D M      EN         DD+       E   A Y    DV   ++ 
Sbjct: 426 DPNDKHKYFDNDEM-----WENAQRMLKGAMDDLGLDYFEAEGEAAFYGPKLDV---QVK 477

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVA 326
            +L   + +S   ++    F    ++ L     + GADG++H   M   GI +   R +A
Sbjct: 478 TALGNEETLSTIQLD----FLLPERFDL----HYVGADGEEHRPVMIHRGIVSTMERFIA 529

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +IE+    KG  +P  +AP ++++I I   ++   D   K+   L   G  V  D+  E
Sbjct: 530 YLIETY---KG-AFPTWLAPHQVTVIPIS--NEAHADYAWKVAKELRNRGVRVDVDERNE 583

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++  +   +     P Q+IVG K  +D  V ++          ++ E +N+
Sbjct: 584 KMQYKIRQSQTHKVPYQLIVGDKEQADGTVNVRRYGQKQTHTETIAEFVNH 634


>gi|219853874|ref|YP_002470996.1| hypothetical protein CKR_0531 [Clostridium kluyveri NBRC 12016]
 gi|219567598|dbj|BAH05582.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 481

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  ++ P    +   +GK  YV   S+GI   R++ A+I    D  G+
Sbjct: 228 GKALQSGTSHYFGQNFAKPFEMQYLDKNGKLQYVYQTSWGI-TTRIIGALIMVHGDDNGL 286

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ I  H +   +  +++   LSK+   V  DD  +  G +F+  ++ 
Sbjct: 287 VVPPRIAPLQVIIVPIAQHKEGVLEKADELKEELSKI-VRVKIDDSDKMPGWKFSEHEMK 345

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLT 423
           G P+++ VG K ++ ++V +  R T
Sbjct: 346 GVPIRLEVGPKDIAKNQVVLVRRDT 370


>gi|153953239|ref|YP_001394004.1| prolyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|146346120|gb|EDK32656.1| ProS [Clostridium kluyveri DSM 555]
          Length = 476

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  ++ P    +   +GK  YV   S+GI   R++ A+I    D  G+
Sbjct: 223 GKALQSGTSHYFGQNFAKPFEMQYLDKNGKLQYVYQTSWGI-TTRIIGALIMVHGDDNGL 281

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ I  H +   +  +++   LSK+   V  DD  +  G +F+  ++ 
Sbjct: 282 VVPPRIAPLQVIIVPIAQHKEGVLEKADELKEELSKI-VRVKIDDSDKMPGWKFSEHEMK 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLT 423
           G P+++ VG K ++ ++V +  R T
Sbjct: 341 GVPIRLEVGPKDIAKNQVVLVRRDT 365


>gi|16081983|ref|NP_394395.1| prolyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|74581452|sp|Q9HJN0|SYP_THEAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|10640252|emb|CAC12066.1| prolyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 462

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 154/404 (38%), Gaps = 95/404 (23%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL----------------QSADLW 80
           KG+  WLP G K +  +++I+R   ++    E++ P L                ++   W
Sbjct: 29  KGMNVWLPYGWKIMSLIDSIVRRAVDKRNFQEVNFPILIGRSMLEVEFEHIRGFENEIYW 88

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V  G     GKE L      ++ +   PT E  M  +F   I+S+ +LP   YQI   +R
Sbjct: 89  VTKG-----GKEKL------EEELALRPTSESAMYPMFSLWIRSHADLPLKIYQIVSVYR 137

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG-LKSIPMRAES 199
            E +     +R RE    +A++   T E ++   ++    Y  I+  +  L  +P   + 
Sbjct: 138 YETKHTRSFIRIREIHFFEAHTAHATYEDAEAQMDQ----YKEIWREISSLLCLPYFYDQ 193

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P                        D+  FP       FD +                 
Sbjct: 194 RP------------------------DWDKFPGAMYTIAFDTV----------------- 212

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      LP     S R +++G I  +GT +S      +   DG   Y    +YG+
Sbjct: 213 -----------LP-----SGRSLQIGTIHQYGTNFSKNYDIKYLKEDGTFDYAHQTTYGM 256

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGC 377
              R++AA+I    D KG++ P  VAP ++ +I I      +  RD    + +   +V  
Sbjct: 257 SE-RLLAAIIGIHGDDKGLVLPPDVAPIQVIIIPIPGAGVMEYARDVENTLNSINIRVKV 315

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   D      G +F   ++ G PL++ +G + V +  + I  R
Sbjct: 316 D---DRENYTPGYKFNDWEMRGVPLRIEIGEREVKNRTLTISMR 356


>gi|238650420|ref|YP_002916272.1| threonyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|259516667|sp|C4K0X3|SYT_RICPU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238624518|gb|ACR47224.1| threonyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 635

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + +   RD      KL     + H  + ++G+  W   G    + +   IR++  +
Sbjct: 231 YLLMLEEAEKRD----HRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IK
Sbjct: 287 NGYTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF 386


>gi|150400311|ref|YP_001324078.1| prolyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|171460844|sp|A6USJ4|SYP_METVS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150013014|gb|ABR55466.1| prolyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 461

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/421 (20%), Positives = 158/421 (37%), Gaps = 70/421 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP G K       I+R+  + T   E   P L   +L  + G +    ++ +  
Sbjct: 24  KGCGVYLPYGFKIRRYSFEILRKLLDDTNHDETLFPMLIPENLLAKEGEHIKGFEDEVYW 83

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                K+     +   PT E  M  + +  IK + +LP   YQ+   FR E +    ++R
Sbjct: 84  VTHGGKSPLEIKLALRPTSETTMYYMMKQWIKVHTDLPMKLYQVVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +  K+A++   T +       +    Y + F  +    IP+     P         
Sbjct: 144 LREIMSFKEAHTAHSTQDDCNKQIKEAIEIYGKFFDEI---CIPVIISKRP--------- 191

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP       FD I                            
Sbjct: 192 ---------------EWDKFPGADYTMAFDTI---------------------------- 208

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+ K      +++G +   G  ++      F+  DG   Y     YGI   R +A++I 
Sbjct: 209 FPDGKT-----MQIGTVHNLGQNFAKTFELEFETPDGNKDYAYQTCYGISD-RAIASLIA 262

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG++ P  VAP +I LI +  K  +++  +  +++ +++ K    V  DD   + 
Sbjct: 263 IHGDEKGLVIPIDVAPIQIVLIPLLFKGKEEIVIEKIKEL-SKILKTKYRVHVDDRDIRP 321

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G ++   ++ G PL++ +G + + + K  I  R  G +  +    ++N     F + +  
Sbjct: 322 GRKYNDWEIKGVPLRIEIGPRDIEEGKAVIVRRDNGQKMTVEAFNILNEVEKTFEDYKAS 381

Query: 449 L 449
           L
Sbjct: 382 L 382


>gi|229154159|ref|ZP_04282283.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
 gi|228629295|gb|EEK85998.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
          Length = 502

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 122 VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 178

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 179 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 212

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 213 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 249 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 298 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 356

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E ++++++
Sbjct: 357 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQL 402


>gi|325269446|ref|ZP_08136063.1| proline--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324988367|gb|EGC20333.1| proline--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 493

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 85/161 (52%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++++I I   ++  ++  EK+      L  +G  V +DD   ++ G +FA 
Sbjct: 295 VLPPRIAPIQVAVIPIFKGEEQLKELSEKLQPVIDDLRSLGITVKYDDSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + ++ +E+  R T  +E +S + ++
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIEVMRRDTLEKESVSFDGIV 395


>gi|299140723|ref|ZP_07033861.1| proline--tRNA ligase [Prevotella oris C735]
 gi|298577689|gb|EFI49557.1| proline--tRNA ligase [Prevotella oris C735]
          Length = 493

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLMGALIMVHSDDNGL 294

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I K  DQ+    +  + +  +L ++G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVIIVPIYKGDDQLKAISNKLQPVINKLEELGISVKYDDSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++++G + + ++ +EI  R T  +E +S + +I
Sbjct: 355 YELKGIPVRLVMGGRDLENNTIEIMRRDTLEKESVSFDGII 395


>gi|148545068|ref|YP_001272438.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           reuteri DSM 20016]
 gi|148532102|gb|ABQ84101.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           reuteri DSM 20016]
          Length = 601

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 163/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + +   G   +  P L + D +  SG ++ Y  +M    
Sbjct: 217 GLPYWLPKGATIRRTIERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWEHYRDDMFPPM 276

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 277 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRDLPLRIAELGMMHRYEKSGALSGLQRVREM 336

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +T +  +  + K+    + ++    +     R              + L D
Sbjct: 337 TLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDFDITDYSFR--------------LSLRD 381

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
               + + + D M     S      D ++L+    E   A Y    D+  +    +L  +
Sbjct: 382 PKNVKKYYANDEMWEKSQSMLKSAMDDLNLDYYEAEGEAAFYGPKLDIQTKT---ALGND 438

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ G DGK+H   M   G +G M    A +   +
Sbjct: 439 ETMSTIQLD----FMLPERFGL----SYVGQDGKEHQPVMIHRGVVGTMERFMAYLTEIY 490

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N +AH +   D  +K+ A   +V      D   E++G +
Sbjct: 491 KGAFPTW---LAPEQVHIIPVNEEAHGEYADDLAKKMKAANIRVNV----DHRNEKMGYK 543

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              A     P  ++VG    +++ V ++      + +MS E  +N
Sbjct: 544 IREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQNEMSQEAFMN 588


>gi|34580760|ref|ZP_00142240.1| threonyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28262145|gb|EAA25649.1| threonyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 635

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + +   RD      KL     + H  + ++G+  W   G    + +   IR++  +
Sbjct: 231 YLLMLEEAEKRD----HRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IK
Sbjct: 287 NGYTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF 386


>gi|301052111|ref|YP_003790322.1| prolyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300374280|gb|ADK03184.1| prolyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 476

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|78486008|ref|YP_391933.1| threonyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123769059|sp|Q31F14|SYT_THICR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78364294|gb|ABB42259.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Thiomicrospira
           crunogena XCL-2]
          Length = 642

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 155/415 (37%), Gaps = 46/415 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      V   +R++       E+  P +    LW +SG +D +   M  
Sbjct: 259 APGMAFWHPKGSTLYRVVENYMRQQLVENDYQEIRTPLIMDRTLWEKSGHWDKFKDNMFT 318

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               N    +  P +      ++  ++ SYR+LP    +  L  R+E      G+MR R 
Sbjct: 319 TETENRDYAV-KPMNCPGHIQVYNHNLSSYRDLPIRLAEFGLVHRNEPSGTLHGLMRVRS 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
           F   DA+ F  TPE  K             +   G  +I ++  + P   +G D   +  
Sbjct: 378 FTQDDAHIF-CTPEQIKEEVQACIDLVFNTYADFGFDNIQVKFSTRPEQRVGED---DVW 433

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA+    Q     +      P E   +   I                      +L D +
Sbjct: 434 DLAEEALEQTLKDANLEYALQPGEGAFYGPKIEF--------------------QLKDCI 473

Query: 272 PENKRVSARGIEVGHI-FYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVI 329
                   R  + G I   F       ++A + GAD + H+  M    I G++     ++
Sbjct: 474 -------GRVWQCGTIQLDFSMTQEERLNAVYIGADNEKHHPVMIHRAILGSLERFVGIL 526

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              ++GK   W   +AP ++ + +I   H++   D  +K    L K G  V  D   E++
Sbjct: 527 VEHYEGKFPTW---LAPTQLVIASIADVHNEYVNDFAKK----LKKHGFRVESDLRNEKV 579

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G +     L   P  ++VG + + +  V ++ R        S EE+I++ S   S
Sbjct: 580 GFKIREHTLQRVPYILVVGDQEMENGTVNVRARGGENLGSFSFEELIDHLSEDVS 634


>gi|157828174|ref|YP_001494416.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166225494|sp|A8GR83|SYT_RICRS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157800655|gb|ABV75908.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 635

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + +   RD      KL     + H  + ++G+  W   G    + +   IR++  +
Sbjct: 231 YLLMLEEAEKRD----HRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IK
Sbjct: 287 NGYTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF 386


>gi|255692010|ref|ZP_05415685.1| threonine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260622256|gb|EEX45127.1| threonine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 646

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 164/432 (37%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQEFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S +F +F          D ++    +   + W     A  +   EK   
Sbjct: 410 --------VFRSMNFQNF---EAQISLRDKVNREKYIGSDDNWEKAEQAIIEACEEKGLP 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  PD VA   IS    +  +QV      K+Y + 
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPISEKFNEYAEQV------KMYLKT 571

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++   V  DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 572 HEIRAIV--DDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKFE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKILNEEVQN 641


>gi|225013012|ref|ZP_03703428.1| threonyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225002828|gb|EEG40808.1| threonyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 648

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/449 (19%), Positives = 166/449 (36%), Gaps = 62/449 (13%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           ++Y   + +   RD      +L L T    +  +G+  WLP G    + +   ++  QN+
Sbjct: 229 TEYLELVEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKAAQNK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  ++  P + S +L++ SG Y+ YG +  +        +  +  P +     +I+ + 
Sbjct: 288 AGYEQVISPHIGSKELYMTSGHYEKYGADSFQPIQTPAEGEEFLLKPMNCPHHCEIYNAK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP  + +    +R E      G+ R R F   DA+ F + P      + K+   
Sbjct: 348 PWSYRDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCM-PSQLDDEFKKVIDL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG ++   +              + L D  + + +                  
Sbjct: 407 VLYVFGSLGFENFTAQ--------------VSLRDPEKPEKYIGS--------------- 437

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT 292
                      W     A  +   EK  D + E    +  G +        +G  +  GT
Sbjct: 438 --------THNWELAEQAIINAAKEKNLDYVIETGEAAFYGPKLDFMVKDALGRKWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      +KG+D + H  V +     G++    A++     G   +W   + P
Sbjct: 490 IQVDYNLPERFDLNYKGSDNELHRPVMIHRAPFGSLERFVAILLEHTGGNFPLW---LMP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
              + +NI    + C++   K+   L         DD  E IG +   +++   P  +I+
Sbjct: 547 ---NQVNILCVSEKCKNYALKVSNFLENHEIRALLDDRNETIGKKIRESEISKVPYMIII 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G K   +  V ++    G     S E V+
Sbjct: 604 GEKEEENQTVSLRKHSEGDLGSFSTESVV 632


>gi|229586468|ref|YP_002844969.1| threonyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|259516664|sp|C3PMR6|SYT_RICAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|228021518|gb|ACP53226.1| Threonyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 635

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + +   RD      KL     + H  + ++G+  W   G    + +   IR++  +
Sbjct: 231 YLLMLEEAEKRD----HRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IK
Sbjct: 287 NGYTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF 386


>gi|20094665|ref|NP_614512.1| prolyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|74580679|sp|Q8TW09|SYP_METKA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19887826|gb|AAM02442.1| Prolyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 485

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD+L  +     R +++G +   G  ++     T++  +G   YV M  YGI   RVVA+
Sbjct: 223 FDTLMPD----GRTLQIGTVHMLGQNFARTFEVTYETEEGDQEYVYMTCYGISD-RVVAS 277

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           +I    D +G++ P  VAP+++ ++ I  K   +   +   ++   L + G  V  DD  
Sbjct: 278 MIAIHGDERGLVLPPDVAPYQVVMVPILKKGVRRKILERAAEVEEMLREEGVRVKVDDRD 337

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              G +F   +L G PL++ +G++ + +    +  R    RE  + EE+
Sbjct: 338 MSPGRKFHYWELKGVPLRIELGARELEEGTAVVFRRDELERETYAFEEL 386



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+Y WLP G +    V   +R +   TG  E+  PTL     L  ES     +  E+  
Sbjct: 42  KGMYVWLPYGFEIRQRVVEKLRRKLRETGHEEVLFPTLIPETQLKKESEHIAGFEDEVYW 101

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E  +  +F   I+S+ +LP   +QI   FR E +    ++R
Sbjct: 102 VTHGGLKELDEKLALRPTSETAIYPMFALWIRSHADLPLKIFQIVNTFRYETKHTRPLIR 161

Query: 152 SRE 154
            RE
Sbjct: 162 MRE 164


>gi|51245280|ref|YP_065164.1| threonyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|50876317|emb|CAG36157.1| probable threonyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 657

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/404 (20%), Positives = 155/404 (38%), Gaps = 45/404 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +    + E  R     +  P +   DLW  SG  D Y   M    
Sbjct: 280 GLPLWLPKGARMRHQIEEFWKAEHYRHDYELLYTPHIARQDLWKTSGHLDFYADSMYAGM 339

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D +       P +      ++++  +SYR+ P  + ++   +R E      G+MR R F 
Sbjct: 340 DIDGVTYQIKPMNCPFHVGVYKAKKRSYRDFPLRWCELGTVYRYERAGALHGLMRVRSFT 399

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F   PE  +     +    L I    G     +   + P   +G D + +    
Sbjct: 400 QDDAHIF-CRPEQLEDEIFNILDFNLFILKSFGFSEYDIYLSTRPEKSVGTDENWD---- 454

Query: 214 ADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             T   ++   K  + + I P E   +   I +                    K+ D L 
Sbjct: 455 KSTNALKLALEKKGLKYEIDPGEGVFYGPKIDI--------------------KIKDQLG 494

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIES 331
            + + S   ++    F    ++ L    ++ G+D  +H  + +    +G++     V+  
Sbjct: 495 RSWQCSTVQVD----FNLPERFEL----SYVGSDNSEHQPIMIHRALMGSLERFIGVLIE 546

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            H G   +W    +P +  ++NI   DQ+  +  EK+YA L      V  D   E++  +
Sbjct: 547 HHAGAFPLW---FSPVQARILNI-TDDQI--EYGEKVYAELRAADIRVEKDLRNEKLNYK 600

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A L+  P  +I+G K   D  V ++ R     + M+++E +
Sbjct: 601 IREAQLVKTPYMLIIGDKEKEDGTVTVRMRNGKNLDPMTVQEFV 644


>gi|193213223|ref|YP_001999176.1| prolyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|259511581|sp|B3QPX3|SYP_CHLP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193086700|gb|ACF11976.1| prolyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 481

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 137/340 (40%), Gaps = 63/340 (18%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++    P
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHADP 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++    +M   Y R F    + ++P                +++    E++ F     
Sbjct: 167 EEAQEEVIRMINVY-RTFAEEYM-AMP----------------VIVGKKSESEKFAGA-- 206

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                       D    + ++++   A  A TS  HN                       
Sbjct: 207 ------------DATYCIEAMMQDGKALQAGTS--HN----------------------- 229

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G  ++      F+  +G   YV   S+G+ + R++ A+I +  D KG++ P  +A  
Sbjct: 230 --LGQNFAKAFDCQFQTKEGVLDYVWATSWGV-STRLIGALIMAHSDDKGLVLPPKLASR 286

Query: 348 KISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVI 405
           ++ +I I K   +  R     I   L+K G   F DD      G +FA  +L G P+++ 
Sbjct: 287 QVVIIPILKGDKEEVRAHARFIAKALNKHGISTFVDDSENNSPGWKFAEYELQGIPVRIE 346

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +G + +++ K  +  R T  + ++ L+  +        NN
Sbjct: 347 LGPRDIAEGKCIVARRDTFEKTEVLLDAEMTENIEEILNN 386


>gi|165932872|ref|YP_001649661.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|165907959|gb|ABY72255.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 644

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + +   RD      KL     + H  + ++G+  W   G    + +   IR++  +
Sbjct: 240 YLLMLEEAEKRD----HRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 295

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IK
Sbjct: 296 NGYTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIK 354

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F
Sbjct: 355 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF 395


>gi|15892219|ref|NP_359933.1| threonyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|22654126|sp|Q92IX4|SYT_RICCN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15619354|gb|AAL02834.1| threonyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
          Length = 635

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + +   RD      KL     + H  + ++G+  W   G    + +   IR++  +
Sbjct: 231 YLLMLEEAEKRD----HRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IK
Sbjct: 287 NGYTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF 386


>gi|319790149|ref|YP_004151782.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317114651|gb|ADU97141.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 658

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 180/460 (39%), Gaps = 73/460 (15%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL  L+E   RD  +   +L L  G+  +   G+  W P G      +   + EE  + G
Sbjct: 232 FLHRLEEAKKRDHRVLGKQLDL-FGIYEEAGPGLVFWHPNGAIIRQEIEQWVEEEHRKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRN--------DKAMIY 106
              +  P +  ADLW  SG Y+ Y + M            RL +          +KA  Y
Sbjct: 291 YQRIYTPHIMKADLWKRSGHYNFYRENMFFVPVVEHDEEERLGNDEVPLTCSEIEKAHWY 350

Query: 107 G--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              P +      I++S ++SYR+LP  F++    +R E      G++R R F   D + F
Sbjct: 351 AVKPMNCPGHILIYKSQVRSYRDLPIRFFEFGTVYRYEKSGSLHGLLRVRGFTQDDGHIF 410

Query: 164 DLTPEGSKHSYNKM---FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
              P+  K     +    +  L  F    + ++  R E   IG + + E    A     +
Sbjct: 411 -CRPDQLKEEIQGVMDYIMDLLSTFKLDYVINVGTRPEKF-IGTEEAWEH---ATNALIE 465

Query: 221 VFCSKDFMDFPIPSENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               + F ++ I   +  F     DI  L++I  +W  P              +LPE   
Sbjct: 466 ALKERGF-EYNIVEGDGAFYGPKIDIAVLDAIGRKWDGPTIQVD--------FNLPER-- 514

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                 ++ ++   G K    M           H   MGS      R +  +IE      
Sbjct: 515 -----FDLTYVDRDGQKKRPVMV----------HRAIMGS----IERFIGLLIEHYAG-- 553

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             ++P  +AP +  +I +   D+   D  +++YA+L + G  V  DD   ++G +   A+
Sbjct: 554 --LFPTWLAPVQAVIIPVS--DKYL-DYADEVYAKLKEAGIRVKLDDESAKVGYKIRKAE 608

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               P  +IVG +   +  V ++ +  G   +M L++ ++
Sbjct: 609 TQKIPYMLIVGEREKENQTVSVRSKREGDLGEMELQQFLD 648


>gi|281352894|gb|EFB28478.1| hypothetical protein PANDA_008019 [Ailuropoda melanoleuca]
          Length = 718

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 155/410 (37%), Gaps = 57/410 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G +  + + A IR E  R G  E+  PTL SA LW  SG ++ Y +
Sbjct: 314 FHELSPGSCFFLPRGTRVYNTLVAFIRAEYTRRGFSEVKTPTLFSAKLWELSGHWEHYQE 373

Query: 92  EMLRLADRNDKAMIYGPTHEEVM--TD--------------IFRSHIKSYRNLPFTFYQI 135
           +M  L       +   P+       TD              +F    +S+R LP      
Sbjct: 374 DMFTLQPPGSDRLASSPSDHPTSHPTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADF 433

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R E      G+ R R F   DA+ F   P+  +            ++  LG  S  
Sbjct: 434 GALHRAEASGSLGGLTRLRCFQQDDAHIF-CAPDQLEAEIRSCLDFLRSVYAVLGF-SFR 491

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P G      F+     GE    C  D  +  +     +F +   LN       A
Sbjct: 492 LALSTRPSG------FL-----GEP---CVWDQAEQVLQRALEEFGEPWDLNPGD---GA 534

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQ 313
            Y    DVH   L D+L    +     ++      FG +Y        KG  G  +  V 
Sbjct: 535 FYGPKIDVH---LRDALGRPHQCGTIQLDFQLPLRFGLQY--------KGQAGVPERPVL 583

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  +  V+  S  GK   WP  ++PF++ +I +    +   +   ++  RL 
Sbjct: 584 IHRAVLGSVERMLGVLAESCGGK---WPLWLSPFQVVVIPVGTEQE---EYAREVQQRLQ 637

Query: 374 KVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G  CD+   D+G  +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 638 AAGLVCDLD-ADLGLTLSRRVRRAQLTHYNFQFVVGQKEQSKRTVNIRTR 686


>gi|254527233|ref|ZP_05139285.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538657|gb|EEE41110.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 638

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 144/382 (37%), Gaps = 42/382 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      +   IRE   +   +E+  P      LW +SG ++ +  
Sbjct: 255 IQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M   A  N    I  P +      +F   +KSY++LP    +     R+E      G+M
Sbjct: 315 DMFTTASENRTYAI-KPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   +        ++   G   I ++  + P     S E 
Sbjct: 374 RVRNFTQDDAHIF-CTEEQIQEEVSTFIDLVFEVYKTFGFDEIIIKLSTRPEKKVGSEEI 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              ++   T+   +K+      P E   +   I  +                    L D 
Sbjct: 433 WDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFS--------------------LKDC 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L  N+      I+V         +S+P  + AT+   D  K + V +    +G+      
Sbjct: 473 L--NRVWQCGTIQVD--------FSMPVRLDATYVDIDNEKRNPVMLHRAILGSFERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   ++ K  IW   +AP++I+L++I   +    + C K    L   G     D   E+
Sbjct: 523 ILIEQYEAKFPIW---LAPYQITLLSITDRNI---EKCLKFNELLINNGYRSTVDIRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSK 409
           IG +   A L   PL  ++G K
Sbjct: 577 IGYKIREATLGRVPLIAVIGDK 598


>gi|228919324|ref|ZP_04082694.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840431|gb|EEM85702.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 502

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKGTGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 122 VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 178

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 179 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 212

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 213 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 249 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 298 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKVA-RVKIDASNKTP 356

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +   +V +  R T  +E + ++++
Sbjct: 357 GWKFNEYEMKGIPIRLEVGPKDIEKKQVVLVRRDTKEKEFVPMDQL 402


>gi|225011920|ref|ZP_03702358.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225004423|gb|EEG42395.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 492

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      +  A+G   YV   S+G+ + R++ A+I +  D  G++
Sbjct: 235 KALQAGTSHFLGQNFAKAFDVKYATAEGGLEYVWATSWGV-STRLIGALIMTHSDDNGLV 293

Query: 340 WPDSVAPFKISLINI----KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
            P ++AP ++ +I I    +  ++V   A EKI   L +    V +D+  + + G +F  
Sbjct: 294 LPPNLAPTQVVIIPIYRGEEEQNKVAATA-EKIKVALEEQNIRVKFDNRDKFKPGYKFND 352

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +L G PL++ +G K + +  VEI  R    +E +S +E+++Y S + +
Sbjct: 353 YELKGVPLRIAIGPKDLQNGTVEIARRDNLTKEVVSQDEIVDYISSQLA 401



 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK ++    + ++ ++  PT E V+ + +++ I+SYR+LP    Q     R E+R R   
Sbjct: 105 GKLIVDPNAKLEEELVVRPTSEAVIWNTYKTWIQSYRDLPILINQWANVVRWEMRTRL-F 163

Query: 150 MRSREFLMKDAYSFDLT 166
           +R+ EFL ++ ++   T
Sbjct: 164 LRTAEFLWQEGHTAHAT 180


>gi|83814638|ref|YP_446639.1| prolyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83756032|gb|ABC44145.1| prolyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 527

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   D ++ YV   S+G+ + R++  +I +  D +G+
Sbjct: 269 GKALQAGTSHFLGQNFAKAFDCTFTNEDNEEEYVWATSWGV-STRLIGGLIMTHSDDQGL 327

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  +AP ++ ++ +   D       + CE++  RL   G  V  D    Q  G +F+ 
Sbjct: 328 VLPPKLAPHQVVIVPLFFDDDQEGPVMETCERLQERLEDHGIRVKMDQNHTQSPGWRFSE 387

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +L G PL++ +G + + +  VE+  R T  +E
Sbjct: 388 HELRGVPLRLAIGPRDLENDNVEMARRDTQEKE 420



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           I  PT E ++ D +   I+SYR+LP  + Q     R E+RPR   +R+ EFL ++ ++
Sbjct: 155 IVRPTSETIIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL-FLRTAEFLWQEGHT 211


>gi|184154400|ref|YP_001842741.1| threonyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364219|ref|ZP_03848315.1| threonine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|325683422|ref|ZP_08162938.1| threonine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|183225744|dbj|BAG26261.1| threonyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070764|gb|EEI09091.1| threonine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|324977772|gb|EGC14723.1| threonine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 627

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 163/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + +   G   +  P L + D +  SG ++ Y  +M    
Sbjct: 243 GLPYWLPKGATIRRTIERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWEHYRDDMFPPM 302

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 303 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRDLPLRIAELGMMHRYEKSGALSGLQRVREM 362

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +T +  +  + K+    + ++    +     R              + L D
Sbjct: 363 TLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDFDITDYSFR--------------LSLRD 407

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
               + + + D M     S      D ++L+    E   A Y    D+  +    +L  +
Sbjct: 408 PKNVKKYYANDEMWEKSQSMLKSAMDDLNLDYYEAEGEAAFYGPKLDIQTKT---ALGND 464

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ G DGK+H   M   G +G M    A +   +
Sbjct: 465 ETMSTIQLD----FMLPERFGL----SYVGQDGKEHQPVMIHRGVVGTMERFMAYLTEIY 516

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N +AH +   D  +K+ A   +V      D   E++G +
Sbjct: 517 KGAFPTW---LAPEQVHIIPVNEEAHGEYADDLAKKMKAANIRVNV----DHRNEKMGYK 569

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              A     P  ++VG    +++ V ++      + +MS E  +N
Sbjct: 570 IREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQNEMSQEAFMN 614


>gi|53713725|ref|YP_099717.1| prolyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60681995|ref|YP_212139.1| prolyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|265764051|ref|ZP_06092619.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|81314941|sp|Q5LCF0|SYP_BACFN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81382377|sp|Q64TJ6|SYP_BACFR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52216590|dbj|BAD49183.1| prolyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60493429|emb|CAH08215.1| prolyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|263256659|gb|EEZ28005.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301163433|emb|CBW22984.1| prolyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 497

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 89/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I ARL ++G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKLIDAKVEGIVARLKQLGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYVQN 400



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYS 162
            ++ ++
Sbjct: 173 WQEGHT 178


>gi|332798664|ref|YP_004460163.1| threonyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696399|gb|AEE90856.1| threonyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 636

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 164/425 (38%), Gaps = 47/425 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +  IH+   G   + P G    + +    R+E ++ 
Sbjct: 232 EYLTRIEEAKRRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIWNLLTDFWRKEHSKR 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW  SG +D Y KE +     +D      P +      ++++  +S
Sbjct: 290 GYQEIKTPIILNEELWRRSGHWDHY-KENMYFTKIDDMNYAVKPMNCPGGILMYKTDSRS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R EL     G+MR R F   DA+ F +  +          +  + 
Sbjct: 349 YRDLPIRLGELGLVHRHELSGVLHGLMRVRCFTQDDAHIFMMPSQIEDEIIG--VIDLVD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F+++                    E+ V   T       S +  D    +     D   
Sbjct: 407 YFYQI-----------------FGFEYNVELSTRPENSMGSDELWDQATAALQGALDKKG 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSA 300
               I E   A Y    D H   L DSL        R  + G I   F    ++ L    
Sbjct: 450 MSYKINEGDGAFYGPKIDFH---LKDSL-------GRTWQCGTIQLDFQMPERFDL---- 495

Query: 301 TFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ GADG+ H  V +     G++     ++   + G   +W   +AP +  ++ I     
Sbjct: 496 SYIGADGEKHRPVMIHRVIFGSIERFIGILIEHYAGAFPVW---LAPVQARVLPISEKHM 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+  +L + G  V  D+  E+IG +   A +   P  +IVG K  +++ V ++
Sbjct: 553 ---DYAYKVKKQLEEAGIRVEVDERNEKIGYKVRDAQMKKIPYMLIVGDKEANENTVSVR 609

Query: 420 HRLTG 424
            R  G
Sbjct: 610 TREKG 614


>gi|257456688|ref|ZP_05621878.1| threonyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257445881|gb|EEV20934.1| threonyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 586

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 171/418 (40%), Gaps = 63/418 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W P G      V   +R++    G +E++ P +    LW+ SG ++ Y K
Sbjct: 198 IEEDNPGEVFWHPNGWTLYLTVQQHVRQKIKEDGYVEVNTPFVMPQSLWLRSGHWEKY-K 256

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +     +IF+  IKSYR+LP    +     R+E      G+M
Sbjct: 257 ENMFITESEKRMFALKPMNCPGHVEIFKQGIKSYRDLPLRIAEFGSCTRNEPSGSLHGIM 316

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGL--KSIPMRAESGP---IGG 204
           R R F+  DA+ F  T E       K F + L+  +R  G   K+I ++  + P   +G 
Sbjct: 317 RVRGFVQDDAHIF-CTEEQISSEVCK-FCNLLKSLYRDFGFDDKAILVKFSTRPEKRVGD 374

Query: 205 DLSHEFIVLADTGETQV--FCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSD 261
           D +       D  E  +   C    +++ I P E   +   +                  
Sbjct: 375 DATW------DRAENALAEACKAAGLEYEIAPGEGAFYGPKLEFT--------------- 413

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP----MSATFKGADGKDHY-VQMGS 316
                L D+L        R  + G I      Y LP    ++A + G D + H  V +  
Sbjct: 414 -----LVDAL-------GREWQCGTI---QADYQLPSKDRLNAEYIGEDNQKHQPVMLHR 458

Query: 317 YGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             +G++ R +  +IE      G   P  ++P +  +I +     V  +  E+I + L+K 
Sbjct: 459 AALGSLERFIGILIEQF----GGALPPWLSPVQAMVIPVAP---VFNEYAEQIASVLTKA 511

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G  V  D   +++ ++         P Q++VG K    + V ++  L G ++ MS++E
Sbjct: 512 GFRVKADIDTDRMNAKIRKYQEQKIPYQLVVGEKEKQSNSVTVR-LLKGEQKTMSVDE 568


>gi|229176981|ref|ZP_04304376.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 172560W]
 gi|229188661|ref|ZP_04315700.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
 gi|228594850|gb|EEK52630.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
 gi|228606456|gb|EEK63882.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 172560W]
          Length = 476

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQAHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|86143057|ref|ZP_01061479.1| threonyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85830502|gb|EAQ48961.1| threonyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 648

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 153/389 (39%), Gaps = 39/389 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + +   ++  Q + G   +  P +   +L+V SG Y  YG++  + 
Sbjct: 261 QGLPLWLPKGAALRERLENFLKAAQKKAGYEMVVSPHIGQKELYVTSGHYAKYGEDSFQP 320

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +IF +   SYR+LP  F +    +R E      G+ R R
Sbjct: 321 ITTPAEGEEFLLKPMNCPHHCEIFNATQWSYRDLPKRFAEFGTVYRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TP+     + K+    L +F  LG ++   +              + L
Sbjct: 381 GFTQDDAHIF-CTPDQLDDEFMKVIDLVLYVFGSLGFENFTAQ--------------VSL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D       +   +      LN +VE   A +      +  KL D +  
Sbjct: 426 RDPENKEKYIGTDENWAKAENAIINAAKAKGLNYVVETGEAAF------YGPKL-DFMV- 477

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIE 330
            K    R  ++G I      Y+LP      +KG+D ++H  V +     G+M    A++ 
Sbjct: 478 -KDALGRSWQLGTI---QVDYNLPERFELAYKGSDNEEHRPVMIHRAPFGSMERFVAILL 533

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
               G   +W   + P + +++ +  +     +  + +   L         DD GE +G 
Sbjct: 534 EHTGGNFPLW---LMPEQATVLTLSEN---YENYAQNVLTLLENHDVRATIDDRGETMGR 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   A++   P  +I+G K  +D  V ++
Sbjct: 588 KIREAEMQKTPYMLIIGEKEANDGTVSVR 616


>gi|49479045|ref|YP_034723.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|81397340|sp|Q6HNZ7|SYP2_BACHK RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|49330601|gb|AAT61247.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 476

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|301767961|ref|XP_002919352.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 718

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 155/410 (37%), Gaps = 57/410 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G +  + + A IR E  R G  E+  PTL SA LW  SG ++ Y +
Sbjct: 314 FHELSPGSCFFLPRGTRVYNTLVAFIRAEYTRRGFSEVKTPTLFSAKLWELSGHWEHYQE 373

Query: 92  EMLRLADRNDKAMIYGPTHEEVM--TD--------------IFRSHIKSYRNLPFTFYQI 135
           +M  L       +   P+       TD              +F    +S+R LP      
Sbjct: 374 DMFTLQPPGSDRLASSPSDHPTSHPTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADF 433

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R E      G+ R R F   DA+ F   P+  +            ++  LG  S  
Sbjct: 434 GALHRAEASGSLGGLTRLRCFQQDDAHIF-CAPDQLEAEIRSCLDFLRSVYAVLGF-SFR 491

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P G      F+     GE    C  D  +  +     +F +   LN       A
Sbjct: 492 LALSTRPSG------FL-----GEP---CVWDQAEQVLQRALEEFGEPWDLNPGD---GA 534

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQ 313
            Y    DVH   L D+L    +     ++      FG +Y        KG  G  +  V 
Sbjct: 535 FYGPKIDVH---LRDALGRPHQCGTIQLDFQLPLRFGLQY--------KGQAGVPERPVL 583

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  +  V+  S  GK   WP  ++PF++ +I +    +   +   ++  RL 
Sbjct: 584 IHRAVLGSVERMLGVLAESCGGK---WPLWLSPFQVVVIPVGTEQE---EYAREVQQRLQ 637

Query: 374 KVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G  CD+   D+G  +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 638 AAGLVCDLD-ADLGLTLSRRVRRAQLTHYNFQFVVGQKEQSKRTVNIRTR 686


>gi|312128091|ref|YP_003992965.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778110|gb|ADQ07596.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 639

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 154/398 (38%), Gaps = 45/398 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   +LP G    + +    REE  + G  E+  P + + DLWV+SG +D Y K
Sbjct: 258 IFEEGPGFPFFLPKGMIIRNILEDFWREEHKKRGYQEIKTPIMLTKDLWVQSGHWDHY-K 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D+     P +      +++    SYR LP    ++ L  R EL     G+M
Sbjct: 317 ENMYFTKIDDQEFAIKPMNCPGSILVYKRKSHSYRELPERLCELGLVHRHELSGVLHGLM 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F + P   K     +       +   G K    +  R E   +G D  
Sbjct: 377 RVRCFTQDDAHIF-MLPSQIKDEIKGVIDLIDYFYSVFGFKYHVELSTRPEIS-MGTD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   +A+T   +    +  +D+ I   +  F                Y    D H E  
Sbjct: 433 -EQWNMAETALKEAL-EEVGIDYKINEGDGAF----------------YGPKIDFHLE-- 472

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            DSL    + +   ++    F    ++ L     + G DG  H  V +     G++    
Sbjct: 473 -DSLKRTWQCATIQLD----FQMPERFDL----YYIGEDGAKHRPVMLHRVVFGSIERFI 523

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++     G   +W   +AP +I +I +  +     D   KI   L + G  V  D   E
Sbjct: 524 AILTEHFAGAFPVW---LAPTQIRVIPVSDN---FNDYAAKISQTLKENGFRVEEDYRSE 577

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +G +   A L   P  VIVG K   ++ + ++ R  G
Sbjct: 578 TVGYKIRDAQLQKIPYMVIVGEKERRENTIAVRDRKKG 615


>gi|225568704|ref|ZP_03777729.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
 gi|225162203|gb|EEG74822.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
          Length = 583

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 163/410 (39%), Gaps = 53/410 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I     G   +LP G    + +    R+   R G +E+S P + S  LW  SG +D Y  
Sbjct: 208 IMDEGPGFPFFLPKGMVLKNLLIDYWRQLHLREGYVEISTPIILSRHLWENSGHWDHYKD 267

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   + D  D A+   P +      +++   +SY++LP    ++ L  R E   +  G+
Sbjct: 268 NMYTTVIDEEDYAV--KPMNCPGGMLVYKVEPRSYKDLPMRVGELGLVHRHEKSGQLHGL 325

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           MR R F   DA+ F +T +  +     +      ++ + G K    +  R E+  +G D 
Sbjct: 326 MRVRCFTQDDAHIF-MTEDQIRDEIKGVARLIDEVYSKFGFKYHVELSTRPENS-MGSDA 383

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E       G  +       MD+ +   +  F                Y    D H E 
Sbjct: 384 DWEMATEGLRGALEELG----MDYVVNEGDGAF----------------YGPKIDFHLE- 422

Query: 267 LFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM 322
             DS+        R  + G I   F    ++ L     + GADG+ H  + +     G++
Sbjct: 423 --DSI-------GRTWQCGTIQLDFQMPQRFEL----EYTGADGEKHRPIMIHRVAFGSI 469

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++   + GK   +P  +AP ++ ++ +   D+   D  +K+   L   G  V  D
Sbjct: 470 ERFIGILIEHYAGK---FPTWLAPVQVKILPVS--DKFA-DYAQKVTDELKAAGIRVELD 523

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              E++G +   A +   P  +IVG K V+++ V ++ R  G    M L+
Sbjct: 524 GRSEKLGYKIREAQMQKVPYMIIVGEKEVAENVVSVRKRDEGDIGSMELK 573


>gi|47567221|ref|ZP_00237935.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|206974268|ref|ZP_03235185.1| prolyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217957991|ref|YP_002336535.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229137257|ref|ZP_04265874.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
 gi|47556064|gb|EAL14401.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|206747508|gb|EDZ58898.1| prolyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217066763|gb|ACJ81013.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228646252|gb|EEL02469.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
          Length = 476

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E ++++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQL 376


>gi|93007241|ref|YP_581678.1| threonyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|123264359|sp|Q1Q809|SYT_PSYCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|92394919|gb|ABE76194.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Psychrobacter
           cryohalolentis K5]
          Length = 644

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 155/423 (36%), Gaps = 70/423 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q+  G  E+  P +    LW  SG + +Y  
Sbjct: 255 MQEQAPGMVFWHANGWTIYQVLEQYMRKVQHDNGYEEIKTPQIVDRSLWERSGHWGNYAT 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSENRDYAV-KPMNCPCHVQVFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +          L ++   G   I M+  + P   +G D S
Sbjct: 374 RVRGFTQDDAHIF-CTQSQIQQEVADFIKLTLAVYEDFGFDKIIMKLSTRPEKRVGSDES 432

Query: 208 HEFI--VLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +F    LAD  ++        +D+  +P E   +   I  +                  
Sbjct: 433 WDFAEKALADALDSS------GLDWAYLPGEGAFYGPKIEFS------------------ 468

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-----MSATFKGADGKD------HYVQ 313
             L DSL             G ++  GT    P     + A F     +       H   
Sbjct: 469 --LKDSL-------------GRVWQCGTIQVDPNMPERLDAEFVNEQNEREVPIMLHRAI 513

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +GS+     R +  +IE ++ G   +W   +AP ++ ++NI        DACE +   L 
Sbjct: 514 LGSF----ERFIGILIE-NYAGWMPVW---LAPQQVVVMNITDKQA---DACENVVNELK 562

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K G     D   E+IG +     L   P  +++G K V    + ++ R       MS+ E
Sbjct: 563 KAGLRAISDLRNEKIGFKIREKTLERIPYMLVLGDKEVESGSINVRTREGENLGVMSVAE 622

Query: 434 VIN 436
            I 
Sbjct: 623 FIT 625


>gi|303237443|ref|ZP_07324009.1| proline--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482393|gb|EFL45422.1| proline--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 493

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 249 VEQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            EQW A P        NE+   +L     E      + ++ G   + G  ++     TF 
Sbjct: 201 AEQWLAIPVVQGVKSENERFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTFL 260

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVC- 361
             + K  YV   S+G+ + R+V A+I +  D  G++ P  +AP ++ ++ I K  +Q+  
Sbjct: 261 NKENKPEYVWATSWGV-STRLVGALIMTHSDDNGLVLPPKIAPIQVVIVPIFKGAEQLAA 319

Query: 362 -RDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +  + +   L   G  V +D+   ++ G +FA  +L G P+++ +G + + ++ +EI 
Sbjct: 320 ITEKLQPVINELRAKGISVKFDNADNKRPGFKFAEYELKGVPVRLAMGGRDLENNTIEIM 379

Query: 420 HRLTGIREDMSLEEVI 435
            R T  +E++S + ++
Sbjct: 380 RRDTLEKENVSFDGIV 395


>gi|88800311|ref|ZP_01115877.1| threonyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88776888|gb|EAR08097.1| threonyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 643

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 10/180 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R +Q++ G  E+  P +    LW +SG +D +G 
Sbjct: 256 LQEDAPGMVFWHPNGWTMYQVIEQYMRRKQHQHGYQEIKTPMVVDRSLWEKSGHWDKFGD 315

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +M    ++  D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 316 DMFTTHSESRDNAI--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCHRNEASGALHGI 373

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F+  DA+ F    EG   S    F+  L  ++H  G     ++  + P   +G D
Sbjct: 374 MRVRGFVQDDAHIF--CTEGQIQSEVASFIGMLEEVYHDFGFDDYILKLSTRPEQRVGSD 431


>gi|228983651|ref|ZP_04143854.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776089|gb|EEM24452.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 476

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 158/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E ++++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQL 376


>gi|254373138|ref|ZP_04988627.1| threonine-tRNA ligase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570865|gb|EDN36519.1| threonine-tRNA ligase [Francisella novicida GA99-3549]
          Length = 634

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 146/382 (38%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LLPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFTMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|332678497|gb|AEE87626.1| Threonyl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 634

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 146/382 (38%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LLPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFTMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|281425750|ref|ZP_06256663.1| proline--tRNA ligase [Prevotella oris F0302]
 gi|281400158|gb|EFB30989.1| proline--tRNA ligase [Prevotella oris F0302]
          Length = 493

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLMGALIMVHSDDNGL 294

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I K  DQ+    +  + +  +L ++G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVIVPIYKGDDQLKAISNKLQPVINKLEELGISVKYDDSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++++G + + ++ +EI  R T  +E +S + ++
Sbjct: 355 YELKGIPVRLVMGGRDLENNTIEIMRRDTLEKESVSFDGIV 395


>gi|329928815|ref|ZP_08282654.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328937458|gb|EGG33879.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 645

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/409 (20%), Positives = 167/409 (40%), Gaps = 47/409 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  WLP G K    +   I + + R G   +  P L + +L+  SG ++ Y ++M  
Sbjct: 263 GQGLPIWLPNGAKLRRTLERYIVDMEERLGYQHVYTPVLGNVELYKTSGHWEHYQEDMFP 322

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             + +++ ++  P +      +++S + SYR+LP    ++ ++ R E+     G+ R R 
Sbjct: 323 KMEMDNEELVLRPMNCPHHMMVYKSDMHSYRDLPIRIAELGMQHRYEMSGALTGLHRVRA 382

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D++ F   P+  K  + ++    + ++   G+     R         LS+      
Sbjct: 383 MTLNDSHIF-CRPDQIKEEFARVIQLIMTVYKDFGIHDYRFR---------LSYR----- 427

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVH------NEKL 267
           D  +T+ +   D M + +            L  +VE    P Y A  +        + ++
Sbjct: 428 DPQDTEKYFQNDEM-WEMSQR--------MLREVVESLDMPFYEAEGEAAFYGPKLDVQI 478

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVA 326
             +L + + +S   ++    F    ++ L     + G DG+ H   +   GI G M    
Sbjct: 479 RTALGKEETLSTVQLD----FLLPERFEL----EYVGDDGQKHRPVVIHRGILGTMERFT 530

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A +  +  G   +W   ++P ++ +I +        D  +++  +L   G  V  D   E
Sbjct: 531 AFLLENFAGALPLW---LSPVQVKVIPV---SNAFEDYAKEVAEKLQFAGISVEPDLRNE 584

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           ++G +   A L   P   IVG    S   V ++ R  G      L+E+I
Sbjct: 585 KLGYKIREAQLEKIPYMFIVGENEKSAGAVSVRKRGEGDIGAQPLDEII 633


>gi|224025842|ref|ZP_03644208.1| hypothetical protein BACCOPRO_02584 [Bacteroides coprophilus DSM
           18228]
 gi|224019078|gb|EEF77076.1| hypothetical protein BACCOPRO_02584 [Bacteroides coprophilus DSM
           18228]
          Length = 521

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 89/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 261 GKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDNGL 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L ++G  V +D+   ++ G +FA 
Sbjct: 320 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLRELGISVKYDNADNKRPGFKFAD 379

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +EI  R T  +E  + E +  Y  +
Sbjct: 380 YELKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRTCEGIEEYVKN 425



 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++   +++ I SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 139 AAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFL 197

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    KM   Y
Sbjct: 198 WQEGHTAHATREEAETEAQKMLHVY 222


>gi|157413014|ref|YP_001483880.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166987324|sp|A8G3W3|SYT_PROM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157387589|gb|ABV50294.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 638

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 144/382 (37%), Gaps = 42/382 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      +   IRE   +   +E+  P      LW +SG ++ +  
Sbjct: 255 IQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M   A  N    I  P +      +F   +KSY++LP    +     R+E      G+M
Sbjct: 315 DMFTTASENRTYAI-KPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   +        ++   G   I ++  + P     S E 
Sbjct: 374 RVRNFTQDDAHIF-CTEEQIQEEVSTFIDLVFEVYKTFGFDEIIIKLSTRPKKKVGSEEI 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              ++   T+   +K+      P E   +   I  +                    L D 
Sbjct: 433 WDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFS--------------------LKDC 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L  N+      I+V         +S+P  + AT+   D  K + V +    +G+      
Sbjct: 473 L--NRVWQCGTIQVD--------FSMPIRLDATYVDIDNEKRNPVMLHRAILGSFERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   ++ K  IW   +AP++++L++I   +    + C K    L   G     D   E+
Sbjct: 523 ILIEQYEAKFPIW---LAPYQLTLLSITDRNI---EKCLKFNELLINNGYRSTVDIRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSK 409
           IG +   A L   PL  ++G K
Sbjct: 577 IGYKIREATLERVPLIAVIGDK 598


>gi|254374591|ref|ZP_04990072.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151572310|gb|EDN37964.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 634

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 160/418 (38%), Gaps = 59/418 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRIAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LLPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFTMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR----EDMSLEEVINYAS 439
           E+IG +     LL  P  VI+G       K E + ++  IR    ED+    V ++ +
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG-------KNEQEQKIITIRKHSGEDLGQMSVYDFCA 624


>gi|146307004|ref|YP_001187469.1| threonyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166225482|sp|A4XTS1|SYT_PSEMY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145575205|gb|ABP84737.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 3/171 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHPNGWTVYQVLEQYMRQVQRENGYVEVRTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   A  N    +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTASENRDYAV-KPMNCPCHVQIFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           R R F+  DA+ F  T +  K          L+++   G   I M+  + P
Sbjct: 374 RVRGFVQDDAHIF-CTEDQVKKEAADFIKLTLQVYADFGFTDIAMKLSTRP 423


>gi|332968643|gb|EGK07696.1| threonine--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 644

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 151/405 (37%), Gaps = 64/405 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      +   +R+ Q   G  E+  P +    LW +SG + +Y  
Sbjct: 255 MQEQSPGMVFWHPNGWTIYQVLEQYMRKVQKDNGYQEIKTPQIVDRSLWEKSGHWGNYAT 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      +F   +KSYR LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQVFNQGLKSYRELPIRLAEFGSCHRNEPSGSLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   N + ++ L ++   G   I M+  + P   +G D S
Sbjct: 374 RVRGFTQDDAHIFCTQAQIQEEVANFIKLT-LDVYKDFGFDQIDMKLSTRPEKRVGTDES 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +   +A+    +   S       +P E   +   I  +                    L
Sbjct: 433 WD---IAEKALAEALDSSGLEWEYLPGEGAFYGPKIEFS--------------------L 469

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP-----MSATFKGADGKD------HYVQMGS 316
            DSL             G ++  GT    P     + A F   + +       H   +GS
Sbjct: 470 KDSL-------------GRVWQCGTIQVDPNMPERLDAEFVNENNERETPIMLHRAILGS 516

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +     R +  +IE  + G   +W   +AP ++ ++NI        +AC+ + A L   G
Sbjct: 517 FE----RFLGMLIE-HYAGWMPVW---LAPQQVVVMNITDKQS---EACQNVVAELQNAG 565

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                D   E+IG +     L   P  +++G K V   +V ++ R
Sbjct: 566 LRAISDLRNEKIGFKIRERTLERIPYMLVLGDKEVESGQVNVRTR 610


>gi|288801976|ref|ZP_06407417.1| proline--tRNA ligase [Prevotella melaninogenica D18]
 gi|302347070|ref|YP_003815368.1| proline--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|288335411|gb|EFC73845.1| proline--tRNA ligase [Prevotella melaninogenica D18]
 gi|302151118|gb|ADK97379.1| proline--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 493

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 85/161 (52%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I K  +Q+    D  + +  +L  +G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKIAPIQVVIVPIFKGEEQLKALTDKLQPVIDQLRALGITVKYDDADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + ++ +E+  R T  +E +S + ++
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIEVMRRDTLEKESVSFDGIV 395


>gi|241889888|ref|ZP_04777186.1| threonyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863510|gb|EER67894.1| threonyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 647

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 159/386 (41%), Gaps = 36/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + S DL++ SG ++ Y ++M    
Sbjct: 262 GLPLWLPNGATIRRTIERYIVDKEVELGYDHVYTPIMGSKDLYITSGHWEHYQEDMFPPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + + M+  P +      ++++   SYR LP    ++ +  R E      G+ R R   
Sbjct: 322 EMDHETMVLRPMNCPHHMMVYKNERHSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           + DA+ F + P+  K  +          +  LG+K+   R         LS+      D 
Sbjct: 382 LNDAHIF-VRPDQLKDEFKLTVGLIEEAYKDLGIKNFSYR---------LSYR-----DP 426

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENK 275
             T+ +   D M         +  D + L+ +  E   A Y    DV  E         K
Sbjct: 427 ENTEKYFDDDAMWNNAQQMLKETADELGLDYVEAEGEAAFYGPKLDVQVETAI-----GK 481

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
           + +   I++   F    ++ L     + G DGK H   +   GI +   R+VA ++E   
Sbjct: 482 QETLSTIQLD--FLLPERFEL----EYIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEY- 534

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             KG + P  ++P ++ +I +  ++    D  ++I   L K G  V  DD  E++G +  
Sbjct: 535 --KGDL-PTWLSPNQVRIIPV--NNDYHYDYSKEIMQELKKAGVKVAIDDRDEKLGYKIR 589

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  +++G K V +  V ++
Sbjct: 590 EAASKKIPYTLVIGDKEVENRNVNVR 615


>gi|77409694|ref|ZP_00786359.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77171692|gb|EAO74896.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 69

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1  MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKXKTIMRQE 60


>gi|294645076|ref|ZP_06722802.1| proline--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|292639582|gb|EFF57874.1| proline--tRNA ligase [Bacteroides ovatus SD CC 2a]
          Length = 447

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 186 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 244

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 245 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 304

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y  +
Sbjct: 305 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYVQN 350



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 64  AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 122

Query: 157 MKDAYS 162
            ++ ++
Sbjct: 123 WQEGHT 128


>gi|118497781|ref|YP_898831.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323753|ref|ZP_03057529.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208779844|ref|ZP_03247188.1| threonyl-tRNA synthetase [Francisella novicida FTG]
 gi|166223342|sp|A0Q762|SYT_FRATN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118423687|gb|ABK90077.1| threonyl-tRNA synthetase [Francisella novicida U112]
 gi|194322117|gb|EDX19599.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208744299|gb|EDZ90599.1| threonyl-tRNA synthetase [Francisella novicida FTG]
          Length = 634

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 146/382 (38%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LLPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFTMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|303230749|ref|ZP_07317496.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514509|gb|EFL56504.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 636

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 157/396 (39%), Gaps = 49/396 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I +   G   +LP G    + +    RE  +     E+  P + +  LW  SG +D Y 
Sbjct: 256 VIKEEGPGFPFFLPKGMALRNELENFWREVHHDFEYDEIRTPIILNKHLWETSGHWDHY- 314

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +     +D+     P +      ++++ + SYR+LP  + ++ L  R EL     G+
Sbjct: 315 RENMYTTIIDDEEYAIKPMNCPGGILVYQNEMHSYRDLPLRYAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSH 208
            R R F   DA+ F + PE  +    K+   + RI+ + GLK  + +  +     GD   
Sbjct: 375 FRVRAFTQDDAHVF-MLPEQMQSELMKVIELFDRIYSQFGLKYHVELSTKPDNAMGD--- 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + I  A T   +       +D+ I   +  F                Y    D H E   
Sbjct: 431 DAIWEAATEALRNAIEAKGIDYVINPGDGAF----------------YGPKLDYHIE--- 471

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVV 325
           DSL        R  + G I       +LP   +  + G DG+ H  + +     G+M   
Sbjct: 472 DSL-------GRTWQCGTI---QLDMNLPERFNVEYIGEDGQKHRTIMIHRACFGSMERF 521

Query: 326 AAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             ++   + G    W  P  V    IS  ++K  +Q+ +        R   V  +V  DD
Sbjct: 522 IGILTEHYAGAFPTWMAPVQVKVLPISEKHVKYANQLAKQ------MRHDYVRVEV--DD 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             E+IG +   A +   P  ++VG K + D+ V ++
Sbjct: 574 RNEKIGYKIRQAQMEKVPYMLVVGDKEMEDNSVNVR 609


>gi|325287305|ref|YP_004263095.1| threonyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324322759|gb|ADY30224.1| threonyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 647

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/401 (19%), Positives = 145/401 (36%), Gaps = 65/401 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G    + +   +++ Q + G   +  P +   +L+V SG Y  YG++  +  
Sbjct: 263 GLPLWLPKGAALRERLENFLKKAQKKAGYEMVVTPHIGQKELYVTSGHYAKYGEDSFQPI 322

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              + D+  +  P +     ++F     SY++LP  F +    +R E      G+ R R 
Sbjct: 323 KTPKMDEEFLLKPMNCPHHCEVFNFKPHSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRG 382

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  TP+     +  +    L + + LG                         
Sbjct: 383 FTQDDAHIF-CTPDQLDQEFKNVIDLSLYVLNSLG------------------------- 416

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                       F +F       D ++       VE W     A  +   EK  D + E+
Sbjct: 417 ------------FTNFKAQVSVRDLNNPDKYIGSVENWEKAENAIINAAKEKGLDYVIES 464

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP     T+KG+D +DH  V +     G
Sbjct: 465 GEAAFYGPKLDFMVKDALGRNWQLGTIQVDYNLPERFDLTYKGSDNEDHRPVMIHRAPFG 524

Query: 321 AMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +M    A++     G   +W  PD      +S        +      +K+   L      
Sbjct: 525 SMERFIALLLEHTGGNFPLWLIPDQAIVLPVS--------EKYEKYAKKVLNSLENDEIR 576

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D+  E +G +   A++   P  +I+G    + + + ++
Sbjct: 577 ALLDNRNETVGKKIREAEMNKIPFMIIIGENEEATNTISVR 617


>gi|332187352|ref|ZP_08389090.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332012513|gb|EGI54580.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 664

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 165/430 (38%), Gaps = 68/430 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G   W P G +    + A +R   + TG  E+  P +  A  W +SG +  Y +
Sbjct: 263 LQQEAHGSVFWHPKGYRIWRELEAYMRRAIDATGYREVKTPQVMDARQWEQSGHWGKYRE 322

Query: 92  EMLRLADR-------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D              + + M   P +      IFR  IKSYR+LP  FY+    
Sbjct: 323 NMFVIPDEVPNTEDEGPLVSDDAQWMALKPMNCPAHVLIFRQGIKSYRDLPLRFYENGCC 382

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R+E      G+MR R+F   DA+ F               V  +R F  L  +      
Sbjct: 383 HRNEPHGALHGLMRVRQFTQDDAHIF---------CREDQIVEEVRAFCELADR------ 427

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I  D    + +       + F +++  D    +E    + +++     EQ+     
Sbjct: 428 ----IYKDFGFTYSIKLALRPEKRFGTEEMWD---QAEEELRNAVVAAGLATEQYG---- 476

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIE------VGHIFYFGTKYS---LP--MSATFKGAD 306
                     ++ LP      A  +E      +G  +  GT  S   LP  + A++ G D
Sbjct: 477 ----------WEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQSDRVLPERLDASYIGED 526

Query: 307 GKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+ H   M    I G+      ++   + G+  +W   +AP +  +  I +         
Sbjct: 527 GERHRPIMLHRAIFGSYERFIGILIEHYAGRFPVW---LAPVQAVVATIVSD---ADGYA 580

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E+  A+L+  G  V  D   E+I  +     +   P+ ++VG +   + KV ++   +  
Sbjct: 581 EEAAAKLAAAGIRVETDLRNEKINYKVREHSVAKVPVLLVVGKREAEEGKVAVRRLGSQA 640

Query: 426 REDMSLEEVI 435
           +E M+L+E I
Sbjct: 641 QEVMTLDEAI 650


>gi|298373605|ref|ZP_06983594.1| threonine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274657|gb|EFI16209.1| threonine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 650

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 162/417 (38%), Gaps = 67/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +++ Q R G  ++  P + +  L+V SG +  YGK+  + 
Sbjct: 265 KGLPLWLPKGTDLRLRLENFLKKLQKRYGYQQVITPHIGAKQLYVTSGHWAKYGKDSFQP 324

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +     +I++S  KSY++LPF   +    +R E      G+ R R
Sbjct: 325 IQTPEEGEEYLLKPMNCPHHCEIYKSTPKSYKDLPFRVAEFGTVYRYEQSGELHGLTRVR 384

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + K+    L IF  L   +   +              I L
Sbjct: 385 SFTQDDAHLF-CRPDQIKEEFIKVMEIILIIFKALRFDNFEAQ--------------ISL 429

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W     A  +   E    ++ E
Sbjct: 430 RDKVDREKYIGSD-----------------------ENWEKAENAIIEACRETGLKAVVE 466

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + GAD + H  V +     
Sbjct: 467 YGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFELEYTGADNQKHRPVMIHRAPF 526

Query: 320 GAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G+M R VA +IE +  GK  +W  P+      IS        +   +  +++ +RL+ + 
Sbjct: 527 GSMERFVAVLIEHTA-GKFPLWLTPEQAVVLPIS--------EKFNEYAQQVASRLNILD 577

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                D   E+IG +    +L   P  +IVG+  +  + V ++ +  G +  M ++E
Sbjct: 578 VRAIGDFRDEKIGRKIRDNELKHIPYLLIVGNDEMETNTVAVRRQGEGDKGKMKVDE 634


>gi|300726434|ref|ZP_07059882.1| threonine--tRNA ligase [Prevotella bryantii B14]
 gi|299776282|gb|EFI72844.1| threonine--tRNA ligase [Prevotella bryantii B14]
          Length = 654

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 152/417 (36%), Gaps = 65/417 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G +    +  ++R         E+  P + S +L++ SG +  YGK+  +
Sbjct: 262 GKGLPIWLPKGTQLRLRLQELLRRVLKPYNYQEVITPGIGSKNLYITSGHWAHYGKDAFQ 321

Query: 96  L--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                  D+  +  P +     +I+    +SY++LP    +    FR E      G+ R 
Sbjct: 322 PIHTPEEDEEYMLKPMNCPHHCEIYARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRV 381

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F + P+  K  +        ++F   G      +              I 
Sbjct: 382 RTFTQDDAHIF-VRPDQVKAEFENNIDIIQKVFSIFGFNDYEAQ--------------IS 426

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D  +T+ +   D                       E W     A  +   EK   ++ 
Sbjct: 427 LRDPKDTEKYIGSD-----------------------EIWEESQNAIREACKEKGLKAVE 463

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLPMSATFKGAD---GKDHYVQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP     +  D    K   V +    
Sbjct: 464 EEGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFKLEYTDVDNTKKTPVMIHRAP 523

Query: 319 IGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G++    AV+     G+  +W  PD VA   IS        +   D  +K+ A L K  
Sbjct: 524 FGSLERFTAVLIEHTAGRFPLWLIPDQVAILPIS--------EKYNDYAKKVKAYLDKHD 575

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
              + DD  E++G +    +L   P  VIVG K      V ++ +  G +  M++EE
Sbjct: 576 VRGYIDDRNEKVGRKIRDNELKRVPYMVIVGEKEAEGGLVSMRKQGGGDQASMTMEE 632


>gi|193215696|ref|YP_001996895.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|238692696|sp|B3QUU7|SYT_CHLT3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193089173|gb|ACF14448.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 659

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/425 (20%), Positives = 160/425 (37%), Gaps = 56/425 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G    + + + +++EQ R G + +  P + + +L+  SG Y  Y       L
Sbjct: 273 GLPMWLPKGAILRNELESFLKDEQRRRGYLPVVTPHIGNIELYKTSGHYPYYSDSQFPPL 332

Query: 95  RLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D    ++  +  P +      I+ S  +SYR+LP    +    +R E      G++R
Sbjct: 333 TFTDELGKEEQYLLKPMNCPHHHQIYSSKPRSYRDLPIRLTEFGTVYRYEQSGELNGLIR 392

Query: 152 SREFLMKDAYSF----DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            R F   D++ +     L  E  K      FV     F  LG   +  R           
Sbjct: 393 VRGFTQDDSHIYCRQDQLVDEICKAIDLTQFV-----FKTLGFAEVQTR----------- 436

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
              + L D   T  +   + +      +  D  D + LN  +    A +           
Sbjct: 437 ---LSLRDPENTSKYSGNNEVWVQAEQDLKDAADKMQLNYFIGLGEASFYGPK------- 486

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGA 321
            D +  +         +G  +  GT    Y +P     T+ G+DG+ H  V +     G+
Sbjct: 487 IDFIVRDA--------IGRKWQLGTVQVDYVMPERFDLTYVGSDGQKHRPVVIHRAPFGS 538

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +     ++  +  G   +W   ++P ++ ++ I       RD    +  +L   G     
Sbjct: 539 LERFIGILIENFAGNFPVW---LSPVQVMVLPITDD---FRDYAHSVLQKLLDAGIRAEI 592

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D+ GE++G +   A++   P   +VG K ++ + V ++    G +  M L+E I      
Sbjct: 593 DERGEKVGKKIRDAEIKKIPYMFVVGEKEMAAASVAVRRHKEGDKGTMPLQEAIRLLQTD 652

Query: 442 FSNNR 446
            S  +
Sbjct: 653 ISTKK 657


>gi|114152249|sp|Q2RZJ2|SYP_SALRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 490

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   D ++ YV   S+G+ + R++  +I +  D +G+
Sbjct: 232 GKALQAGTSHFLGQNFAKAFDCTFTNEDNEEEYVWATSWGV-STRLIGGLIMTHSDDQGL 290

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  +AP ++ ++ +   D       + CE++  RL   G  V  D    Q  G +F+ 
Sbjct: 291 VLPPKLAPHQVVIVPLFFDDDQEGPVMETCERLQERLEDHGIRVKMDQNHTQSPGWRFSE 350

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +L G PL++ +G + + +  VE+  R T  +E
Sbjct: 351 HELRGVPLRLAIGPRDLENDNVEMARRDTQEKE 383



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           I  PT E ++ D +   I+SYR+LP  + Q     R E+RPR   +R+ EFL ++ ++
Sbjct: 118 IVRPTSETIIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL-FLRTAEFLWQEGHT 174


>gi|330503839|ref|YP_004380708.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328918125|gb|AEB58956.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHPNGWTVYQVLEQYMRQVQREHGYVEVRTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   A  N    +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTASENRDYAV-KPMNCPCHVQIFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F+  DA+ F    +  K + + + ++ L+++   G   I M+  + P   +G D
Sbjct: 374 RVRGFVQDDAHIFCTEDQVKKEAADFIRLT-LQVYSDFGFTDIAMKLSTRPAKRVGSD 430


>gi|239947855|ref|ZP_04699608.1| threonyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|241116864|ref|XP_002401645.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215493189|gb|EEC02830.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|239922131|gb|EER22155.1| threonyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 635

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + ++G+  W   G    + +   IR++  + G IE+  P L    LW  SG +  +  +
Sbjct: 256 QEEAQGMVFWHDKGWSIYNIIEQYIRKKIRKNGYIEVKTPVLVDKSLWEASGHWKKFRDD 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L + +DK +   P +      IF+  IKSYR+LP    +  L  R+E      G+MR
Sbjct: 316 MFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMR 374

Query: 152 SREFLMKDAYSF 163
            R  +  DA+ F
Sbjct: 375 VRSLVQDDAHIF 386


>gi|90407011|ref|ZP_01215201.1| threonyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90311882|gb|EAS39977.1| threonyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 635

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/422 (21%), Positives = 149/422 (35%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W   G      +   IRE+    G  E+  P +    LW +SG +  Y  
Sbjct: 255 MQDEAPGMVFWHANGWTIYRELEKYIREQTEEYGYQEVKAPQILDRSLWEKSGHWAKYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N    I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFCTCSENRDYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMSEFGSCHRNEPSGSLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T        +         +   G ++I ++  + P   +G D +
Sbjct: 374 RVRAFTQDDAHIF-CTEAQILDEVSSCIKMVFECYKTFGFENIDVKLSTRPEQRVGDDAT 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+          D     +P E   +   I                       L
Sbjct: 433 WD---KAEAALADALTKNDVEFSWLPGEGAFYGPKIEFT--------------------L 469

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G I      +S+P  + ATF G D + H   M    I G++  
Sbjct: 470 HDCL-------GRAWQCGTI---QLDFSMPGRLDATFVGEDNERHTPVMIHRAILGSLER 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G   I+P  ++P ++ ++NI        +   ++  +L K G  V  D  
Sbjct: 520 WIGILTEEYAG---IFPTWLSPQQVVVMNITDKQS---EYVAEVVTKLKKSGIRVISDLR 573

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++VG K V   ++ I+ R         +++ I Y       
Sbjct: 574 NEKIGFKIREHTLKRVPYLLVVGDKEVEARELSIRTRKGDDLGKFKIDDFITYIKEEIVT 633

Query: 445 NR 446
            R
Sbjct: 634 RR 635


>gi|121997230|ref|YP_001002017.1| threonyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|166223346|sp|A1WU53|SYT_HALHL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121588635|gb|ABM61215.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Halorhodospira
           halophila SL1]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 171/444 (38%), Gaps = 65/444 (14%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + RT     + + S G+  W P G +    V   IR      G  E+  P 
Sbjct: 237 EAERRDHRRLGRTQDLFHVQEESPGMVFWHPRGWRLYLEVQDYIRRLMRDNGYQEIHTPM 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    LW  SG +  + + M  + +   +     P +     ++F+  +KSYR+LP    
Sbjct: 297 LVDRSLWERSGHWAMFAENMF-VTESESRDYAVKPMNCPCHVEVFKQGLKSYRDLPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLK 191
           +     R+E      G+MR R F+  DA+ F    E       + F+  + R +   G +
Sbjct: 356 EFGSCHRNEPSGTLHGLMRVRGFVQDDAHIF--CTENQIQEEVRTFIDLVYRAYRDFGFE 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDF--MDFPI-PSENTDFDDIISL 245
            + +   + P   +G D       L D  E+ +  + +   +D+ + P E   +   I  
Sbjct: 414 DVLIALSTRPDERVGDD------ALWDKAESALATALETHGLDYTLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
           +                    L D L   +RV   G            +S+P  + A F 
Sbjct: 468 S--------------------LRDCL---ERVWQLGT-------IQVDFSMPGRLGAQFV 497

Query: 304 GADGKDHYVQMGSYGI-GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             DG+     M    I G++ R +  +IE  H G  +  P  +AP +  ++NI       
Sbjct: 498 DDDGERRTPVMLHRAILGSLERFIGILIE--HYGGAL--PTWLAPVQAVVLNITDRQA-- 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  +L + G     D   E+IG +     L   P  +++G + +    V ++HR
Sbjct: 552 -DYARSVEQQLLESGFRAEADLRNEKIGYKIREHTLQKVPYMLVLGDRELESGTVAVRHR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M LEE++     R SN+
Sbjct: 611 DGTDLGSMELEELVA----RLSND 630


>gi|194333013|ref|YP_002014873.1| threonyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|238693296|sp|B4S3D2|SYT_PROA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194310831|gb|ACF45226.1| threonyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 657

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 164/415 (39%), Gaps = 60/415 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G    + + + +REEQ + G + +  P + +  L+  SG Y  Y +      
Sbjct: 273 GLPIWLPKGAIVRNELESFLREEQRKRGYVPVYTPHIGNIGLYKRSGHYPYYSESQFPPL 332

Query: 98  DRND-----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D     +  +  P +      I+ S ++SYR+LP    +    +R E      G++R
Sbjct: 333 TYTDDLGREEQYLLKPMNCPHHHMIYSSKLRSYRDLPIRLTEFGTVYRHEQSGELNGLIR 392

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R F   D++ +    +      N + ++   +F  LG   I +R              +
Sbjct: 393 ARGFTQDDSHIYCRPDQLVDEICNAIDLTKF-VFATLGFDDIQIR--------------L 437

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L D                   EN   D       + EQ        +D  N   F  +
Sbjct: 438 SLHD------------------PENQ--DKYGGTKEVWEQAEKDVREAADRMNIDYFTGI 477

Query: 272 PENKRVSAR-----GIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
            E      +        +G  +  GT    Y +P     ++ G+DG+ H  V +     G
Sbjct: 478 GEASFYGPKIDFIVRDAIGRKWQLGTVQVDYVMPERFDLSYIGSDGQPHRPVIIHRAPFG 537

Query: 321 AM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +M R +  +IE +    G  +P  +AP +I+++ I   D+V  D   ++   L   G  V
Sbjct: 538 SMERFIGVLIEHT----GGNFPLWLAPVQIAVLPIT--DEV-HDYAVQVRDTLHAAGMRV 590

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             D   E+IG +   +++   P  VI+G K  +  +V ++    G + +M++EE+
Sbjct: 591 ELDTRSEKIGKKIRESEVAKIPYMVIIGQKEAAAGEVSLRRHREGDQGNMTVEEL 645


>gi|297184115|gb|ADI20234.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 501

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F+  +GK  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 243 GKALQAGTSHFLGQNFAKAFEVKFQNKEGKQEYVWATSWGV-STRLMGALIMTHSDDNGL 301

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP+++ ++ I K  +Q+    +  E +  +L   G  V +D+    + G +F  
Sbjct: 302 VLPPKLAPYQVVIVPIYKGQEQLDAISEVAEDLMGQLRAQGITVKYDNRDTHKPGWKFNQ 361

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +L G PL++ +G K +    VE+  R T  ++ +  +EV
Sbjct: 362 YELQGIPLRIAIGPKDLEKGSVELARRDTLTKQFVDQKEV 401



 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 125 EEELIVRPTSETIIWDTYKDWIQSYRDLPILVNQWANVVRWEMRTRL-FLRTAEFLWQEG 183

Query: 161 YSFDLTPE 168
           ++   T +
Sbjct: 184 HTAHATKQ 191


>gi|222100818|ref|YP_002535386.1| Threonyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|254783544|sp|B9KAN7|SYT_THENN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221573208|gb|ACM24020.1| Threonyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 161/405 (39%), Gaps = 41/405 (10%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           ++ G+  +LP G   L+ +    RE     G  E+  P + +  LW  SG +D Y + M 
Sbjct: 257 YAPGMPFFLPRGVIVLNELMNFSRELHRERGYQEIFTPLIMNEQLWRISGHWDHYAENMY 316

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
              ++ ++     P +      +++S   SYR+LP  F++     R E      G+MR R
Sbjct: 317 -FIEKGEERYAVKPMNCPGHILVYKSRAVSYRDLPLRFFEFGRVHRYERSGVLHGLMRVR 375

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIV 212
            F   DA+ F  TP+  +     +      I+ + G      R E   +  D +  E I 
Sbjct: 376 SFTQDDAHIF-CTPDQIEDEILGVLELINTIYSQFGFT---YRVELSTMPEDHMGDEAIW 431

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T   +    +  + + +      F                Y    D H   + DSL 
Sbjct: 432 EKATNALKKALDRAGLPYRVNEGEGAF----------------YGPKIDFH---IKDSLG 472

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + +   ++    F    K+++    T+ G D ++H   M    I G++     ++  
Sbjct: 473 REWQCATIQLD----FMMPEKFNV----TYIGPDNREHTAVMIHRAIYGSLERFFGILIE 524

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              G    +P  +AP ++++I I        +  +K+   LS+ G  VF DD  E +G +
Sbjct: 525 HFAGA---FPTWIAPVQVAVIPISDKHS---EGAKKVATMLSREGFRVFLDDRRETLGYR 578

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              A +   P  V++G + +   K+ ++ R     +D+ ++  I+
Sbjct: 579 IRQAQIQKIPYMVVLGDRELESGKLSVRTRSGKEIKDVEMDHFID 623


>gi|34540714|ref|NP_905193.1| prolyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|81417446|sp|Q7MVS7|SYP_PORGI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34397028|gb|AAQ66092.1| prolyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 493

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   + TF   DG   +V   S+G+ + R++ A+I S  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFNVTFADKDGNRDFVWATSWGV-STRLMGALIMSHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP+++ +I I  +++      EK   I   L   G  V +D+   ++ G +FA 
Sbjct: 295 VLPPKLAPYQVVIIPIYRNEEQLAQIDEKATQITQALRAKGISVKYDNSDNKKPGWKFAE 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +L G P+++ +G++ + ++ +EI  R T  +E + L+ +
Sbjct: 355 YELKGIPVRLAMGARDLENNTIEIARRDTLTKETVGLDGI 394



 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I+S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIVRPTSETIIWNTYKNWIQSHRDLPILCNQWANVVRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLT 166
           ++   T
Sbjct: 177 HTAHAT 182


>gi|317495533|ref|ZP_07953901.1| threonyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914347|gb|EFV35825.1| threonyl-tRNA synthetase [Gemella moribillum M424]
          Length = 647

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 36/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L S DL++ SG ++ Y ++M    
Sbjct: 262 GLPLWLPNGATIRRTIERYIVDKEVELGYDHVYTPVLGSKDLYITSGHWEHYQEDMFPPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + + M+  P +      ++++   SYR LP    ++ +  R E      G+ R R   
Sbjct: 322 EMDHETMVLRPMNCPHHMMVYKNERHSYRELPIRIAELGMMHRYESSGAVSGLQRVRGMT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           + DA+ F + P+  K  +          +  LG+ +   R         LS+      D 
Sbjct: 382 LNDAHIF-VRPDQLKDEFKLTVGLIEEAYKDLGITNFSYR---------LSYR-----DP 426

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPENK 275
             T+ +   D M         +  D + L+ +  E   A Y    DV  E         K
Sbjct: 427 ENTEKYFDDDVMWNNAQQMLKETADELGLDYVEAEGEAAFYGPKLDVQVETAI-----GK 481

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
           + +   I++   F    ++ L     + G DGK H   +   GI +   R+VA ++E   
Sbjct: 482 QETLSTIQLD--FLLPERFEL----EYIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEY- 534

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             KG + P  +AP ++ +I +  ++    D  ++I   L K G  V  DD  E++G +  
Sbjct: 535 --KGDL-PTWLAPNQVRIIPV--NNDYHYDYSKEIMQELKKAGVKVAIDDRDEKLGYKIR 589

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  +++G K V +  V ++
Sbjct: 590 EAANKKIPYTLVIGDKEVENKGVNVR 615


>gi|195035423|ref|XP_001989177.1| GH11579 [Drosophila grimshawi]
 gi|193905177|gb|EDW04044.1| GH11579 [Drosophila grimshawi]
          Length = 493

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 170/413 (41%), Gaps = 48/413 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   + P G    + +  +IR E  + G  E+  P + +A LW+ SG +  Y 
Sbjct: 106 FFHELSPGSCFFQPRGAHIYNTLMNLIRGEYRKRGFQEVISPNIYNAKLWMTSGHWQHYA 165

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+
Sbjct: 166 DNMFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGL 224

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F   PE  K S  K  + +LR  + +   S  +   + P    G+L 
Sbjct: 225 TRVRRFQQDDAHIF-CAPEQIK-SEMKGCLDFLRHVYTIFGFSFQLVLSTRPEQYLGELE 282

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  S D    P    + D               A Y    D+    +
Sbjct: 283 Q-----WDAAEKALAESLDEFGMPWKENHGD--------------GAFYGPKIDI---TI 320

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVA 326
            D+L    + +   ++    F    +++L     +   DG K   V +    +G++  + 
Sbjct: 321 MDALKRPFQCATIQLD----FQLPIRFNL----NYIADDGEKKRPVIIHRAILGSVERMI 372

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYAR--LSKVGCDVFWDD 383
           A++  ++ GK   WP  ++P ++ ++ +  A+D+  +   +++YA   +S+  CD     
Sbjct: 373 AILTENYAGK---WPFWLSPRQVMVVPVGPAYDEYAKSVRDQLYAAGFMSESDCDA---- 425

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            G+ +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I+
Sbjct: 426 -GDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELIS 477


>gi|260170261|ref|ZP_05756673.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315918623|ref|ZP_07914863.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313692498|gb|EFS29333.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 497

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYVQN 400



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|257876814|ref|ZP_05656467.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257810980|gb|EEV39800.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 477

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++     T+   + K  +    S+G+ + R++ A+I +  D  G+
Sbjct: 214 GKAVQAGTSHYMGTKFAEAFDITYLTKENKHTHAHTTSWGV-STRLLGALIMTHGDENGL 272

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           ++P ++AP ++ L+ +     +    +  E++YA     G  V  DD     G +F   +
Sbjct: 273 VFPPTIAPTQVVLLPVGPWKKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGYKFNEWE 332

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L G  L++  G + +   KV +K R    ++ ++LEE+  +         P L
Sbjct: 333 LKGACLRIECGPRDLEAGKVMVKVRDLADKQTVALEELEAFVDQELQAMTPRL 385


>gi|255320853|ref|ZP_05362027.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262380254|ref|ZP_06073409.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255302022|gb|EET81265.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298448|gb|EEY86362.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 151/400 (37%), Gaps = 54/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG   +Y  
Sbjct: 255 MQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYLEIKTPQIVDFTLWEKSGHAANYAD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGPEVADFIKLTLDVYKDFGFEDVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDMAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP  + A+F   D  +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPERLDASFVTEDNERDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  +AP +  ++NI         ACE++ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLAPVQACVMNITDSQA---QACEQVVAKLKENGIRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610


>gi|160882791|ref|ZP_02063794.1| hypothetical protein BACOVA_00752 [Bacteroides ovatus ATCC 8483]
 gi|156111815|gb|EDO13560.1| hypothetical protein BACOVA_00752 [Bacteroides ovatus ATCC 8483]
          Length = 497

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYVQN 400



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|228937684|ref|ZP_04100320.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228970572|ref|ZP_04131222.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977142|ref|ZP_04137543.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228782590|gb|EEM30767.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228789159|gb|EEM37088.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821971|gb|EEM67963.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326938179|gb|AEA14075.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 476

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|237716484|ref|ZP_04546965.1| prolyl-tRNA synthetase [Bacteroides sp. D1]
 gi|255691705|ref|ZP_05415380.1| proline--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|262408082|ref|ZP_06084630.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294809476|ref|ZP_06768179.1| proline--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|298484158|ref|ZP_07002324.1| proline--tRNA ligase [Bacteroides sp. D22]
 gi|299145587|ref|ZP_07038655.1| proline--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|229444131|gb|EEO49922.1| prolyl-tRNA synthetase [Bacteroides sp. D1]
 gi|260622644|gb|EEX45515.1| proline--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|262354890|gb|EEZ03982.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294443294|gb|EFG12058.1| proline--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295084169|emb|CBK65692.1| prolyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
 gi|298269662|gb|EFI11257.1| proline--tRNA ligase [Bacteroides sp. D22]
 gi|298516078|gb|EFI39959.1| proline--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 497

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYVQN 400



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|330958898|gb|EGH59158.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLAVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  E+ +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|257784431|ref|YP_003179648.1| threonyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472938|gb|ACV51057.1| threonyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 588

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 157/393 (39%), Gaps = 60/393 (15%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           WLP G    + +     E Q R G  E+  P + S  LW  SG +D Y KE +     ++
Sbjct: 218 WLPNGMALRNALTEYWHEMQARFGYQEVQTPLILSRSLWETSGHWDHY-KENMYTTTVDE 276

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           +     P +      I++S  +SYR+LP    +  L  R E++    G+ R REF   DA
Sbjct: 277 EDFAIKPMNCPGACLIYKSKPRSYRDLPMKLAEAGLDHRYEMKGALHGLFRVREFTQDDA 336

Query: 161 YSF----DLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           + F     +T + +  S+  +  +Y   F   +R+ L + P       +G D   E    
Sbjct: 337 HLFIRPDQITEQVTDASH--LITAYYAQFGFPYRVELSTRP----EDSMGSDEDWE---R 387

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLP 272
           A+ G                       D + ++ +V +   A Y    D H   L D L 
Sbjct: 388 AEQGLRDAL------------------DAMGIDYVVNEGDGAFYGPKIDFH---LTDCL- 425

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVI 329
                  R  + G I      + LP      +  +DG K   + +   G G+      ++
Sbjct: 426 ------GRSWQCGTI---QLDFQLPHNFQLEYIDSDGTKKQPIMIHRAGFGSFERFIGIL 476

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             +++GK  +W   ++P ++ ++ +    +  R    ++  +L+  G  V  DD  E+IG
Sbjct: 477 TENYEGKFPVW---LSPCQVKILPVS---EKSRSYAHEVADKLAAAGIRVKVDDRDEKIG 530

Query: 390 SQFAVADLLG-FPLQVIVGSKFVSDSKVEIKHR 421
            +   A  L   P  +I+G + V    + ++ R
Sbjct: 531 YKIREARSLDRVPYMLILGEQEVEAGNISVRDR 563


>gi|237720697|ref|ZP_04551178.1| prolyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293373969|ref|ZP_06620310.1| proline--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|229449532|gb|EEO55323.1| prolyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292631045|gb|EFF49682.1| proline--tRNA ligase [Bacteroides ovatus SD CMC 3f]
          Length = 497

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYVQN 400



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|224002114|ref|XP_002290729.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974151|gb|EED92481.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 791

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 5/163 (3%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L + QEN   A+   H+ + +     M H+ S G   WLP G +  + +   I+E  
Sbjct: 376 KKMLKVWQENQEKAKERDHRRIAQQQDLVMFHELSAGSAFWLPHGARIYNKLIEFIKEHY 435

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G  E+  P + + DLW +SG    Y K+ +   D   K     P +      +F   
Sbjct: 436 WRRGYDEIITPNIYNLDLWHQSGHAMHY-KDAMFCFDVEGKEWAMKPMNCPGHCLMFAGK 494

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           I+SYR+LP  F    +  R+EL     G+ R R F   DA+ +
Sbjct: 495 IRSYRDLPIRFADFGVLHRNELSGALSGLTRVRRFQQDDAHIY 537


>gi|134301672|ref|YP_001121640.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166223343|sp|A4IX68|SYT_FRATW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134049449|gb|ABO46520.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 634

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 146/382 (38%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAIKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LLPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFIMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|282858709|ref|ZP_06267863.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282588513|gb|EFB93664.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 649

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 156/419 (37%), Gaps = 65/419 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           KG+  WLP G +    +  ++R+        E+  P + S +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQDLLRKLLKPYNYQEVITPGIGSKNLYVTSGHYAHYGKDAFQP 322

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +I+    +SY++LP    +    +R E      G+ R R
Sbjct: 323 IQTPEEDEEYMLKPMNCPHHCEIYAHKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+  K  +       L++F   G ++   +              I L
Sbjct: 383 NFTQDDAHIF-VRPDQVKAEFENNIDIILKVFKTFGFENYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +  +D                       + W     A  +   EK   +  E
Sbjct: 428 RDPEDKEKYIGED-----------------------DVWNESEQAIKEACAEKGLKATVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLPMS--ATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 LGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPQRFHLEYTAEDNTKKTPVMVHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+M    AV+     G   +W  PD VA   IS        +   D   ++  +L   G 
Sbjct: 525 GSMERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAREVMQKLDTAGV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               DD  E+IG +    +L   P  V+VG K  ++  V ++ +  G +  M++++ I+
Sbjct: 577 RALIDDRNEKIGRKIRDNELKRIPYMVVVGEKEAAEGLVAMRKQGGGEQSTMTIQQFID 635


>gi|301629969|ref|XP_002944104.1| PREDICTED: threonyl-tRNA synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 841

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 150/391 (38%), Gaps = 56/391 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +H+ G   W P G      V   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEHAPGTVFWHPKGWMLWQEVEQYMRRVYRDNGYQEVKGPQILDKTLWEKTGHWDKYRE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M +  +++ D A+   P +      IF+  IKSYR+LP  F +     R+E      G+
Sbjct: 315 NMFITESEKRDYAL--KPMNCPGHILIFKQGIKSYRDLPLRFGEFGNCHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   D + F    E    S    F + L R++   G   I  R  + P   IG +
Sbjct: 373 MRVRGFTQDDGHIF--CTEDMIQSEVATFTTLLQRVYRDFGFTEILYRLSTRPEKRIGSE 430

Query: 206 LSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATS 260
            S +     LA+ G     C+ +++    P E   +   I     +++  +W      T 
Sbjct: 431 ESWDRAESALAE-GLRASGCTFEYL----PGEGAFYGPKIEYVLKDALGREWQ---CGTI 482

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGI 319
            V       ++PE                        + A F G DG  H  + +    +
Sbjct: 483 QVD-----PNMPER-----------------------LDAEFVGEDGARHRPIVLHRAIV 514

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCD 378
           G++     ++     G   +W   +AP +++++NI  A    CR+   K++  L      
Sbjct: 515 GSLERFIGILIEQFAGALPVW---LAPVQVAVLNITDAQADYCREIAAKLHKALPNQSLR 571

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
              D   E+I  +     L   P  ++VG K
Sbjct: 572 AVTDLRNEKITYKIREHALQKLPYILVVGDK 602


>gi|297623866|ref|YP_003705300.1| threonyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165046|gb|ADI14757.1| threonyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 665

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/413 (20%), Positives = 160/413 (38%), Gaps = 54/413 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G   ++ +  + +E + R G  ++  P +    L+  SG    Y + M    
Sbjct: 271 GLPLWLPRGAVIVEEIEKLAKEMERRAGYQQVRTPHVTKEQLFTRSGHLPYYAESMFPPM 330

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + ++      P +      IF +  +SYR LP    +    +R ++     G+MR R   
Sbjct: 331 ELDNVRYYLKPMNCPFHHKIFAARPRSYRELPLRLAEYGTCYRYEDHGALMGLMRVRSMQ 390

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M DA+ +  TPE  +  +  +   YL  F   G++   MR                   +
Sbjct: 391 MNDAHIY-CTPEQFEDEFMGVIALYLEYFRLFGIRDYVMRL------------------S 431

Query: 217 GETQVFCSKDFMDFPIPSENTD--FDDIISLNSI----VEQWTAPYAATSDVHNEKLFDS 270
             ++    K +++ P   E T+      +    I    VE   A Y    DV   +++  
Sbjct: 432 KHSRAGLGKKYVNNPELWEQTEAMVRGALERGGINFIEVEDEAAFYGPKIDV---QIYSV 488

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD------HYVQMGSYGIGAMRV 324
           +     ++   ++      FG +Y           DG        H   + ++     R+
Sbjct: 489 IGREFTLATNQVDFAVPARFGLEYV--------AEDGSRKTPLCLHRAPLSTH----ERL 536

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           V  ++E    G   +W   +AP ++ ++ I           + + ARL++ G     D  
Sbjct: 537 VGFLLE-HFAGDFPLW---LAPEQVRVVPIADRHNAY---AQSLKARLAEAGLRAEADLR 589

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           GE++ ++   A+LL  P  VIVG K V    +  + R    ++ +S+E  + +
Sbjct: 590 GERMNAKVRDAELLKVPYTVIVGDKEVEAGALSFRSRKEPEQKGVSVEAFVAH 642


>gi|148653933|ref|YP_001281026.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048584|sp|A5WHD5|SYT_PSYWF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148573017|gb|ABQ95076.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 644

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 150/405 (37%), Gaps = 64/405 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      +   +R+ Q   G  E+  P +    LW +SG + +Y  
Sbjct: 255 MQEQSPGMVFWHPNGWTIYQVLEQYMRKVQKDNGYQEIKTPQIVDRSLWEKSGHWGNYAT 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      +F   +KSYR LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQVFNQGLKSYRELPIRLAEFGSCHRNEPSGSLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   N + ++ L ++   G   I M+  + P   +G D S
Sbjct: 374 RVRGFTQDDAHIFCTQAQIQEEVANFIKLT-LDVYKDFGFDQIEMKLSTRPEKRVGTDES 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +   +A+        S       +P E   +   I  +                    L
Sbjct: 433 WD---IAEKALADALDSSGLEWEYLPGEGAFYGPKIEFS--------------------L 469

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP-----MSATFKGADGKD------HYVQMGS 316
            DSL             G ++  GT    P     + A F   + +       H   +GS
Sbjct: 470 KDSL-------------GRVWQCGTIQVDPNMPERLEAEFVNENNERETPIMLHRAILGS 516

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +     R +  +IE  + G   +W   +AP ++ ++NI        DAC+ + + L   G
Sbjct: 517 F----ERFLGMLIE-HYAGWMPVW---LAPQQVVVMNITDKQA---DACQNVASELQNAG 565

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                D   E+IG +     L   P  +++G K V   +V ++ R
Sbjct: 566 LRAITDLRNEKIGFKIRERTLERIPYMLVLGDKEVESGQVNVRTR 610


>gi|195114918|ref|XP_002002014.1| GI17149 [Drosophila mojavensis]
 gi|193912589|gb|EDW11456.1| GI17149 [Drosophila mojavensis]
          Length = 691

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 173/412 (41%), Gaps = 48/412 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + +  +IR E  + G  E+  P + +A LW+ SG +  Y  
Sbjct: 305 FHELSPGSCFFQPRGAHIYNTLMNLIRGEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAD 364

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ 
Sbjct: 365 NMFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLT 423

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSH 208
           R R F   DA+ F   PE  K S  K  + +LR  + +   S  +   + P    G+L  
Sbjct: 424 RVRRFQQDDAHIF-CAPEQIK-SEMKGCLDFLRHVYTIFGFSFQLVLSTRPDKYLGELDQ 481

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 D  E  +  ++   +F +P +    D             A Y    D+    + 
Sbjct: 482 -----WDAAEKAL--AESLNEFGMPWKENPGDG------------AFYGPKIDI---TIM 519

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           D+L    + +   ++    F    +++L     +   DG K   V +    +G++  + A
Sbjct: 520 DALKRPFQCATIQLD----FQLPIRFNL----NYIADDGEKRRPVIIHRAILGSVERMIA 571

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYAR--LSKVGCDVFWDDM 384
           ++  ++ GK   WP  ++P ++ ++ +  A+D+  +   +++YA   +S+V CD      
Sbjct: 572 ILTENYAGK---WPFWLSPRQVMVVPVGPAYDEYAKTVRDELYAAGFMSEVDCDA----- 623

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G+ +  +   A L  F   ++VG K  S   V ++ R   +  ++S+ E+I+
Sbjct: 624 GDTMNKKIRNAQLAQFNFILVVGDKERSSKTVNVRTRDNKVHGEVSVAELIS 675


>gi|28869575|ref|NP_792194.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970495|ref|ZP_03398622.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301384174|ref|ZP_07232592.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302132643|ref|ZP_07258633.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|38258312|sp|Q883H9|SYT_PSESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28852817|gb|AAO55889.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924666|gb|EEB58234.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|330876789|gb|EGH10938.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331016139|gb|EGH96195.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTQSESRDYAI-KPMNCPCHVQVFNQGLKSYRELPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  E+ +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|219113189|ref|XP_002186178.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583028|gb|ACI65648.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 684

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/438 (20%), Positives = 173/438 (39%), Gaps = 45/438 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +  +L+E   RD  +   KL L + +      G+  W P G K    +    ++   +
Sbjct: 258 KQYKKMLEEAKKRDHRMLGKKLDLFS-IQEDAGGGLVFWHPKGSKVRRMIEDFWKDAHIQ 316

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + DLW  SG +D Y  +M    D  ++     P +      +++  ++
Sbjct: 317 DGYDVVYSPHIANIDLWKTSGHFDFYRADMFDQMDVENEQYQIKPMNCPFHCLMYKDELR 376

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR R F   DA+ F L PE  +     +     
Sbjct: 377 SYRDLPFRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCL-PEQLQDEIVGVLDLTE 435

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            I  R G     +   + P   +G D   +   +A  G  +V             +  D+
Sbjct: 436 TILSRFGFDKYDVMLSTRPEKSVGSDEIWDAATVALEGALKV-------------KGWDY 482

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       + E   A Y    D+   K+ D++    + S    +      FG +Y+    
Sbjct: 483 N-------VDEGGGAFYGPKIDL---KIRDAIGRQWQCSTVQCDFNLPERFGLEYA---- 528

Query: 300 ATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                ADG      M    I G++     ++  +  G   +W   +AP ++ L+ +    
Sbjct: 529 ----SADGTRERPIMVHRAIFGSIERFFGILIENCSGDFPLW---LAPTQLKLLPVT--- 578

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               + C +I A+  K+G  +  D   E++  Q   A+    P+  +VG K +  + + +
Sbjct: 579 DAVHEYCNEIAAKALKMGLRIEVDRGSERLAKQIRNAEQARIPVMAVVGMKEMESNSLAV 638

Query: 419 KHRLTGIREDMSLEEVIN 436
           + R  G      +E++++
Sbjct: 639 RSRKLGDLGSFEVEDLLS 656


>gi|213403436|ref|XP_002172490.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212000537|gb|EEB06197.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 699

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 155/403 (38%), Gaps = 47/403 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IRE+    G  E+  P + + DLW  SG +++Y 
Sbjct: 298 FFHELSPGSCFFLPHGARIYNQLIAWIREQYKIRGFQEVITPNMYNVDLWKTSGHWNNYA 357

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       DK  +  P +      I++S  +SYR+LP+      +  R+E      G+
Sbjct: 358 ENMFSFEIEKDKFAL-KPMNCPGHCLIYKSRDRSYRDLPWRCADFGVLHRNEFSGALTGL 416

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F   P+  +      F     ++   G      +  R E   + GDL
Sbjct: 417 TRVRRFQQDDAHIF-CRPDQVRSEIENCFDFLKYVYGVFGFTFHLELSTRPEEKYL-GDL 474

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   +  E Q+  + D   +       D               A Y    D+    
Sbjct: 475 E-----TWNKAEAQLKAALDASGYEWELNEGD--------------GAFYGPKIDI---T 512

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--------VQMGSYG 318
           +FD+L    + +   ++    F    ++ L    T +G +  D          V +    
Sbjct: 513 VFDALKRQHQCATIQLD----FQLPERFELEFHGTTEGDEAADSTNKNKYIRPVMIHRAI 568

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G++  + A++   + GK   WP  ++P ++S++ + A      D   K+  RL   G  
Sbjct: 569 LGSVERMIAILTEHYGGK---WPFWLSPRQVSVVPVSA---AAFDYANKVQKRLFDAGLF 622

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              D     +  +   A L  +    +VG++    + V I++R
Sbjct: 623 ADVDTSDNTLPKKIRNAQLSQYNFIFVVGAEEEKTNSVNIRNR 665


>gi|161524952|ref|YP_001579964.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350300|ref|YP_001945928.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|238687005|sp|A9ABF9|SYT_BURM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160342381|gb|ABX15467.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334322|dbj|BAG43392.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
          Length = 635

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 152/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++NK+ +S  R F   G   I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQIIAESIAFNKLAMSVYRDF---GFDHIDIKLSLRPEQRM 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S E    A+ G  +   +       +P E                  A Y    + H  
Sbjct: 428 GSDETWDRAEQGLREALTACGLQWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMMLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G   +W   +AP +  ++NI A  QV  +  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPVW---LAPVQAVVLNI-AESQV--EYAQSLAQTLQKQGLRVTADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|310658431|ref|YP_003936152.1| threonyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825209|emb|CBH21247.1| threonyl-tRNA synthetase [Clostridium sticklandii]
          Length = 637

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 155/392 (39%), Gaps = 45/392 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP G    + +    RE     G +E+  P + +  LW  SG + +Y KE +   
Sbjct: 261 GFPFFLPKGTVLKNKLLEYWREVHREDGYVEIETPIILNRQLWETSGHWFNY-KENMYTV 319

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +++     P +      ++++ ++SY++ P    +I    R EL     G+MR R F 
Sbjct: 320 EIDEEDFAIKPMNCPGGMLVYQTKMRSYKDFPIRMGEIGRVHRHELSGALHGLMRVRAFT 379

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLAD 215
             DA+ F + PE  K     +     +I+   G    + +        G++S     + D
Sbjct: 380 QDDAHIF-MLPEQIKDEIKGVVSLIDKIYKTFGFSYHLELSTRPEKFLGEIS-----MWD 433

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E+ +  + + +  P      D               A Y    D H   L D +    
Sbjct: 434 EAESNLKAALEELGLPYIINEGD--------------GAFYGPKIDFH---LRDCI---- 472

Query: 276 RVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESS 332
               R  + G I      Y LP     ++ G DG+ H  V +     G++     ++   
Sbjct: 473 ---GRTWQCGTI---QLDYQLPERFELSYIGKDGEKHRPVMIHRVAFGSIERFIGILIEH 526

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + GK  +W   +AP ++ ++ I   D+   D  ++I   +      V  DD  E+IG + 
Sbjct: 527 YAGKFPLW---IAPVQVKILPIS--DKFM-DYAKQIEKAMYDAKIRVELDDRAEKIGYKI 580

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             A L   P  +IVG K +++  + ++ R  G
Sbjct: 581 REAQLEKVPYMIIVGEKELNEGNISVRSRDLG 612


>gi|251797403|ref|YP_003012134.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545029|gb|ACT02048.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 482

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK+++     +   +    +    S+G+ + R++ A+I    D +G+
Sbjct: 225 GKAVQAGTSHYLGTKFAVAFDIKYLDRENTLQFAHTTSWGV-STRLIGAMIMVHGDDRGL 283

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
             P  VAP ++ +I I   K  DQV     +++YA L K G  V  DD  +   G +F  
Sbjct: 284 ALPPKVAPTQVIMIPIGPAKTRDQVV-GRVDELYAELKKAGVRVKVDDRSDVSPGWKFNE 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
            ++ G PL++ +G + + + +V +  R++G    +R+D  L EV
Sbjct: 343 YEMRGVPLRLELGPRDMENGQVVLASRVSGEKRIVRQDNLLAEV 386


>gi|168188008|ref|ZP_02622643.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294168|gb|EDS76301.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 637

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 165/412 (40%), Gaps = 51/412 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +   G   + P G    + +    RE   + G  E+  P + +  LW +SG +D Y +
Sbjct: 255 LKEEGPGFPFFYPKGMILRNTLENYWREMHEKAGYGEIRTPIILNEKLWHQSGHWDHYKE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      +++S + SYR LP    ++ L  R E      G+
Sbjct: 315 NMYFTKIDGEDYAI--KPMNCPGSILVYKSDLHSYRELPIRLGELGLVHRHEYSGALHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYN--KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           MR R F   DA+ F    + +       KM  ++  +F       +  R E   +G D  
Sbjct: 373 MRVRNFTQDDAHIFMTKEQITSEILGVIKMIDNFYSLFGFEYFVELSTRPEDS-MGSDEE 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A T       ++  +++ I   +  F                Y    D H   L
Sbjct: 432 WE----AATNGLVKALNEAGLEYKINEGDGAF----------------YGPKIDFH---L 468

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMR 323
            D L        R  + G I   F    ++ L    ++ G DG+ H   M    I G++ 
Sbjct: 469 RDCL-------GRTWQCGTIQLDFQMPERFDL----SYVGPDGEKHRPVMAHRVIFGSIE 517

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI   +QV  + C++I   L++ G  V  D 
Sbjct: 518 RFIGILTEHYAGA---FPTWLAPVQVKIMNI-TDNQV--EYCKEIQKALNESGIRVELDL 571

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E+IG +   A L   P  +++G K ++++ + ++ R  G    M L++ I
Sbjct: 572 RNEKIGYKIREAQLQKIPYMLVLGDKEMNENTIAVRARKQGDLGAMKLDDFI 623


>gi|330967298|gb|EGH67558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTQSESRDYAI-KPMNCPCHVQVFNQGLKSYRELPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  E+ +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|296228691|ref|XP_002759919.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 1
           [Callithrix jacchus]
          Length = 718

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 166/432 (38%), Gaps = 69/432 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IR E  R G  E+  PTL S  LW +SG ++ Y 
Sbjct: 313 FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFFEVKTPTLFSTKLWEQSGHWEHYQ 372

Query: 91  KEMLRL----ADR------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           ++M  +    +DR                +   P +      +F    +S+R LP     
Sbjct: 373 EDMFAVQPPGSDRPASSQSDHSTRHTTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLAD 432

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSKHSYNKMFVSYLRIFHRL 188
                R E      G+ R R F   DA+ F  T +      S   + +   + L    RL
Sbjct: 433 FGALHRAEASGGLCGLTRLRCFQQDDAHIFCTTDQLEAEIQSCLDFLRSVYAVLGFSFRL 492

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            L + P    SG +G                   C  D  +  +     +F +   LNS 
Sbjct: 493 ALSTRP----SGFLGDP-----------------CLWDQAEQVLQQALKEFGEPWDLNSG 531

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGAD 306
                A Y    DVH   L D+L        R  + G I      + LP+     +KG  
Sbjct: 532 D---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---QLDFQLPLRFDLQYKGQA 575

Query: 307 GK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDA 364
           G  +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I +    ++  R+ 
Sbjct: 576 GALERPVLIHRAVLGSVERLLGVLAESCRGK---WPLWLSPFQVVVIPVGTEQEEYARET 632

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + + A  + + CD+  D     +  +   A L  +  Q +VG K  S S V I+ R   
Sbjct: 633 QQSLQA--AGLVCDLDADSR-LTLSRRIRRAQLAHYNFQFVVGQKEQSKSTVNIRTRDNR 689

Query: 425 IREDMSLEEVIN 436
           +  + SL E + 
Sbjct: 690 LLGEWSLPEAVQ 701


>gi|290559900|gb|EFD93222.1| prolyl-tRNA synthetase [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 477

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 142/370 (38%), Gaps = 88/370 (23%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E +M D +   IKSYR+LP    Q     R E +    ++R RE L ++ 
Sbjct: 102 DERLALRPTSETIMYDSYSKWIKSYRDLPLLINQWNTMVRWETKETRLLLRGREVLWQEG 161

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--DLSHEFIVLADTGE 218
           +    T E + ++  ++   Y +    +   +IP+      I G    S +F    DT  
Sbjct: 162 HCVFRTEEEADNNAREILQFYKQYMEEM--LAIPV------IAGRKSESEKFAGAVDTYT 213

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +   S +FM                            AATS  HN              
Sbjct: 214 IEAVLSNNFMS--------------------------QAATS--HN-------------- 231

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                       G  +S P    F   +    Y    S+GI +MR +  ++    D KG+
Sbjct: 232 -----------LGRNFSKPFDIKFLDENNNLQYPFQTSWGI-SMRSIGIMVLIHGDDKGL 279

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFW---DDMGEQIGSQFAV 394
           + P  +AP++ ++I I K       +  +K+  +L+++G        DD+    G +   
Sbjct: 280 VLPPHIAPYQCAIIPILKDEKDKVLEYADKVNLKLNELGIRTILFNRDDVSP--GWKLND 337

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS----------LEEVINY------- 437
           +D+ G P+++ +G K +    + +K R++     ++          LEE+ NY       
Sbjct: 338 SDMKGIPIKIQIGKKELESDSIFVKTRISNEASSIAFSDISKIKDKLEEIQNYMLSNARE 397

Query: 438 -ASHRFSNNR 446
            A+HR    +
Sbjct: 398 QANHRIKEEK 407


>gi|330973951|gb|EGH74017.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  E+ +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|15606769|ref|NP_214149.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|8928367|sp|O67583|SYT_AQUAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2984004|gb|AAC07549.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 638

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 162/415 (39%), Gaps = 47/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   +REE  + G   +  P +  + LW  SG  + Y + M    
Sbjct: 263 GLILWLPRGAIYRKVLEDYLREEHLKRGYQLVYTPHVGKSKLWETSGHLECYKQNMFPSM 322

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      I++S  +SY+ LP   +++   +R EL     G++R R F 
Sbjct: 323 KIDEEEYYVKPMNCPFHIAIYKSRTRSYKELPLKLFELGTVYRYELSGVLHGLLRVRGFT 382

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+    TPE       +     L      G     +   + P       E+ + +D 
Sbjct: 383 QDDAHIV-CTPEQVNDVIRETLDFALSTLKDFGFNEFKIYLSTRP-------EYSIGSD- 433

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              Q   S++ +   I     +++       I E   A Y    DV   K+ D+      
Sbjct: 434 --EQWEVSQNALKKAIEDLGYEYE-------IDEGGGAFYGPKIDV---KIRDA------ 475

Query: 277 VSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
                  +G ++   T    ++LP     T+ G D K H   M     +G++     ++ 
Sbjct: 476 -------IGRMWQLSTIQFDFNLPERFDMTYVGPDNKKHRPYMIHRALLGSIERFTGILL 528

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   IW   ++P ++ +I I        +  +K+Y  L + G     D   E++ +
Sbjct: 529 EHYAGLLPIW---LSPTQVMIIPIADRHH---EYAKKVYEFLKENGIRAEMDLREERMNA 582

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +   A+L   P+ ++VG +   ++ V ++ +  G    M L + +++   +  N 
Sbjct: 583 KIRDAELKKIPVILVVGDREAQNNTVSVRTKKEGNLGSMELNKFLDWIKEKIKNK 637


>gi|261880625|ref|ZP_06007052.1| proline-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270332666|gb|EFA43452.1| proline-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 493

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 84/161 (52%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   D K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTFLNKDNKPEYVWATSWGV-STRLMGALIMVHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I I  +++       K   +  + + +G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVIIPISRNNEQLEAISAKLKPVIDKFASLGISVKYDDSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++++G++ + +  +EI  R T  +E++S + ++
Sbjct: 355 YELKGVPVRLVMGARDLENGTIEIMRRDTLEKENVSFDGIV 395



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIIRPTSETMIWNTYKNWIQSYRDLPILCNQWCNVMRWEMRTR-PFLRTSEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + ++    KM   Y
Sbjct: 177 HTAHATEQEAQEEARKMLKVY 197


>gi|56707928|ref|YP_169824.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670399|ref|YP_666956.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457008|ref|ZP_03665481.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370416|ref|ZP_04986421.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874733|ref|ZP_05247443.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|73919791|sp|Q5NGL8|SYT_FRATT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123063497|sp|Q14I20|SYT_FRAT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56604420|emb|CAG45450.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320732|emb|CAL08833.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568659|gb|EDN34313.1| hypothetical protein FTBG_00181 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840732|gb|EET19168.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159111|gb|ADA78502.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 634

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 146/382 (38%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LLPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFIMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|302187613|ref|ZP_07264286.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 640

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  E+ +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|301303993|ref|ZP_07210111.1| threonyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300840790|gb|EFK68550.1| threonyl-tRNA synthetase [Escherichia coli MS 124-1]
          Length = 429

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 43  MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 102

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 103 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 161

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 162 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 218

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 219 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 257

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 258 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 307

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +LS  G  V  D  
Sbjct: 308 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---DYVNELTQKLSNAGIRVKADLR 361

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 362 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 412


>gi|158334707|ref|YP_001515879.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158304948|gb|ABW26565.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 606

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G + ++ P +   DL+  SG +  Y ++M  L 
Sbjct: 220 GLPLWTPKGTLLRSQLEDFLKQEQIQRGYLGVTTPHIARVDLFKTSGHWQKYQEDMFPLM 279

Query: 98  DRND------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             ND      +  +  P +      I++S ++SYR+LP    +    +R E      G+ 
Sbjct: 280 SENDADRSSEQGFVMKPMNCPFHIQIYKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLT 339

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F + D++ F +TP+     + K+    L +F +L LK+   R
Sbjct: 340 RVRGFTVDDSHLF-VTPDQLDDEFLKVVDLILSVFEKLQLKNFKAR 384


>gi|224531964|ref|ZP_03672596.1| prolyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511429|gb|EEF81835.1| prolyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 488

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 165/414 (39%), Gaps = 85/414 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L     L  E    D +  E   + +   +++    +  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYGFLEKEKDHIDGFSPEFAIIKNAGGESLMEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVIRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDVYKRF------------------------MEDYLAIPVFCGKK-------SEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVG 407
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG
Sbjct: 298 DEINKKILDYSDCVMQILKKAEFRVEIDKDIRSSPGFRFSSAEFKGIPIRLEVG 351


>gi|187931727|ref|YP_001891712.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691566|sp|B2SGS3|SYT_FRATM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187712636|gb|ACD30933.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 634

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 146/382 (38%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LLPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFIMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|298373192|ref|ZP_06983182.1| proline--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298276096|gb|EFI17647.1| proline--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 493

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F   D K  YV   S+G+ + R++ A+I +  D  G++
Sbjct: 237 KALQAGTSHFLGQNFAKAFDVQFVNKDNKLEYVWATSWGV-STRLMGALIMAHSDNNGLV 295

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  +AP ++ ++ I  + +      E+I+    RL  +G  V +DD   ++ G +FA  
Sbjct: 296 LPPRLAPIQVVIVPIYKNAEQLAAVAERIHPVVDRLRSLGVSVKFDDSDNKKPGWKFAEY 355

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +L G P+++ +G + + +  VE+  R    ++ M LE +  Y
Sbjct: 356 ELKGVPVRLALGGRDLENGTVEVFRRDKLEKQTMPLEGIEQY 397



 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++   +++ I+SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIVRPTSETIIWSTYKNWIQSYRDLPILVNQWANVVRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
            ++ ++   T E +     KM   Y     R
Sbjct: 173 WQEGHTAHATREEAMEEATKMLNVYADFAER 203


>gi|56460507|ref|YP_155788.1| threonyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|73919798|sp|Q5QYN4|SYT_IDILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56179517|gb|AAV82239.1| Threonyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 638

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 153/397 (38%), Gaps = 50/397 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   IRE+       E+  P +    LW +SG ++ + + 
Sbjct: 257 QEEAPGMVFWHHNGWTIFRELETYIREKMREYEYQEVKGPMMMDRVLWEKSGHWEKFSEL 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTSSENREYAV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   DA+ F  T +  +             +   G ++I ++  + P   +G D + 
Sbjct: 376 VRGFTQDDAHIF-CTEQQVQEEVAGCIKMVYETYKTFGFENIDVKLSTRPEKRLGDDATW 434

Query: 209 EFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +    ++T   Q   + D +DF  +P E   +   I                       L
Sbjct: 435 D---RSETALAQALKNND-IDFSYLPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           FD L        R  + G I      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 471 FDCL-------GRAWQCGTI---QLDFALPGRLGATYVGEDNERHTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G   +W   ++P ++ L+NI  +     D   K+   L++ G     D  
Sbjct: 521 FMGILIEEYAGHFPLW---LSPTQVVLMNITDNQS---DYVRKVVKTLNEKGIRASADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG K V   +V ++ R
Sbjct: 575 NEKIGFKIREHTLKRVPYLLVVGDKEVEAGEVAVRTR 611


>gi|301327449|ref|ZP_07220684.1| threonyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|309793489|ref|ZP_07687916.1| threonyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|312969746|ref|ZP_07783929.1| threonyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|300845961|gb|EFK73721.1| threonyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|308123076|gb|EFO60338.1| threonyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|310338031|gb|EFQ03120.1| threonyl-tRNA synthetase [Escherichia coli 1827-70]
          Length = 622

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +LS  G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---DYVNELTQKLSNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 605


>gi|309788453|ref|ZP_07683057.1| threonyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308923835|gb|EFP69338.1| threonyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 622

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +LS  G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---DYVNELTQKLSNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKELGSMDVNEVI 605


>gi|154253109|ref|YP_001413933.1| threonyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|189083615|sp|A7HWJ3|SYT_PARL1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154157059|gb|ABS64276.1| threonyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 652

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 158/426 (37%), Gaps = 62/426 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + ++G   W P G +    +   +R   +  G +E+  P L  +  W +SG +  Y +
Sbjct: 256 LQEEAQGSVFWHPKGWRIWQALEQYVRRRIDAAGYVEVRTPQLLDSKFWEQSGHWGKYRE 315

Query: 92  EMLRLADR-------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D                K M   P +      IF+  +KSYR+LP    +    
Sbjct: 316 NMFVVPDEVPSTDEDAPVLSGKAKLMAIKPMNCPAHIQIFKQGVKSYRDLPLRMAEFGCC 375

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMR 196
            R+E      G+MR R+    DA+ F    E       + FV+ L  ++  +G     +R
Sbjct: 376 HRNEPHGALHGLMRVRQMTQDDAHIF--CTEDQIKEETEAFVALLESVYEDMGFTGTKLR 433

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             + P          V A T ET     K  ++  + +   +FD             A Y
Sbjct: 434 LATRP---------DVRAGTDETWDKAEK-ALEEALKALGKEFD-------FAPGEGAFY 476

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY 311
               + H   L D+             +G  +  GT    + LP  + A++ G DG  H 
Sbjct: 477 GPKLEFH---LRDA-------------IGRSWQLGTLQLDFVLPERLDASYIGEDGNKHR 520

Query: 312 VQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             M    I G++     ++  +++G+  +W   +AP +  +  I +         E++  
Sbjct: 521 PVMLHRAILGSLERFIGILIENYEGRFPMW---LAPVQAVVTTITSD---ADPYAEEMLQ 574

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G     D   E+I  +     +   P   + G +   +  V I+   +  ++ M 
Sbjct: 575 KLRDAGIRAELDLRNEKINYKVREHSVAKVPAIFVAGKREAEEGTVSIRRLGSQQQQTMK 634

Query: 431 LEEVIN 436
           L+E I 
Sbjct: 635 LDEAIK 640


>gi|66045402|ref|YP_235243.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|75502334|sp|Q4ZUG7|SYT_PSEU2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|63256109|gb|AAY37205.1| Threonyl-tRNA synthetase, class IIa [Pseudomonas syringae pv.
           syringae B728a]
          Length = 640

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L D  E+ +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|99081562|ref|YP_613716.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
 gi|123077585|sp|Q1GFW2|SYT_SILST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|99037842|gb|ABF64454.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
          Length = 648

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 153/403 (37%), Gaps = 58/403 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G +    +   +R  Q+R G +E++ P +    LW +SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPNGWRIYTTLQDYMRRMQDRDGYVEVNTPQVVDRKLWEKSGHWDKYQE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      +F   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEDHAREKAVNALKPMNCPCHVQVFNQGLKSYRDLPLRMAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    S    F+++L +++  LG  +  ++  + P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CTEDQITSETAKFIAFLSKVYADLGFDNWTIKLSTRPEQR 437

Query: 202 IGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           IG D + + +   L D       C     D+                 I+E   A Y   
Sbjct: 438 IGSDETWDNMEQALGDA------CKAAGYDY----------------EILEGEGAFYGPK 475

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGS 316
            +     L D++  N +     ++           +LP  + A+F G DG  H  V +  
Sbjct: 476 LEF---TLTDAIGRNWQCGTLQVDA----------NLPERLEASFIGQDGSKHRPVMLHR 522

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G+      ++   H GK   W   +AP ++ + +I +      D   ++   L   G
Sbjct: 523 ATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITSE---ADDYVNEVVETLRAAG 576

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                D   E+I  +     +   P+ + VG + V +  V ++
Sbjct: 577 VRAEADTRNEKINYKVREHSVGKVPVILAVGHREVEERTVSVR 619


>gi|156086662|ref|XP_001610740.1| threonyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154797993|gb|EDO07172.1| threonyl-tRNA synthetase, putative [Babesia bovis]
          Length = 736

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 13/160 (8%)

Query: 17  DAEIASHKLMLRT-GMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           DA+   H+L+  T  + H    HS G   WLP G K  + +   +RE     G  E+  P
Sbjct: 320 DAKANDHRLLGTTLNLFHFDNIHSPGSCFWLPNGAKIYNRLVDFMRENYRLRGYQEVITP 379

Query: 73  TLQSADLWVESGRYDSYGKEM-LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLP 129
            + S +LW  SG YD+Y + M +   D  +  M  +  P H      +F+    SYR LP
Sbjct: 380 NIYSCELWKTSGHYDNYKENMYMFTVDEAEWGMKGMNCPGH----CLMFKHMNPSYRQLP 435

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
             F    +  R+EL     G+ R R F   DA+ F  TPE
Sbjct: 436 LRFADFGVLHRNELTGSLSGLTRVRRFQQDDAHIF-CTPE 474


>gi|82777067|ref|YP_403416.1| threonyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|123755748|sp|Q32FI0|SYT_SHIDS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81241215|gb|ABB61925.1| threonine tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 642

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---DYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKELGSMDVNEVI 625


>gi|78189671|ref|YP_380009.1| threonyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123729828|sp|Q3APV9|SYT_CHLCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78171870|gb|ABB28966.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           chlorochromatii CaD3]
          Length = 657

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 167/423 (39%), Gaps = 52/423 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      + + +REEQ + G + +  P + + +L+  SG Y  Y       L
Sbjct: 273 GLPMWLPKGAIIRSELESFLREEQRKRGYVPVYTPHIGNIELYKRSGHYPYYSDSQFPPL 332

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D + K   Y   P +      I+ S ++SYR+LP  F +    +R E      G+ R
Sbjct: 333 TYHDEDGKQEQYLLKPMNCPHHHLIYSSKMRSYRDLPLRFTEFGTVYRHEQSGELNGLAR 392

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-HEF 210
           +R F   D++ +    +      + + ++   +F  LG   +  R         LS H+ 
Sbjct: 393 ARGFTQDDSHIYCRPDQLVDEICSAIELTQF-VFKTLGFAEVQTR---------LSLHDP 442

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A  G T     +   D    +E    D  I +              +  +  K+ D 
Sbjct: 443 ANQAKYGGTAEVWEQAEKDVQEAAERMGVDYFIGIGE------------ASFYGPKI-DF 489

Query: 271 LPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAM-R 323
           +  +         +G  +  GT    Y +P     T+ G+DG+ H  V +     G+M R
Sbjct: 490 IVRDA--------IGRKWQLGTVQVDYVMPERFDLTYVGSDGQKHRPVVIHRAPFGSMER 541

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE +  G   +W   +AP +++++ I   +    D    +Y RL   G     D 
Sbjct: 542 FIGLLIEHT-AGNFPLW---LAPVQVAVLPIAEENH---DYATTVYRRLLAAGIRAELDT 594

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+I  +   A++   P  +++G K  ++ +V ++    G     + +E+I       +
Sbjct: 595 RSEKINRKIRDAEMSKTPCMLVIGQKEQANGEVSLRRHRQGDAGRFATDELIETLKQEIA 654

Query: 444 NNR 446
           N +
Sbjct: 655 NRQ 657


>gi|306821412|ref|ZP_07455017.1| proline--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550534|gb|EFM38520.1| proline--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 482

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  ++     T++  DGK       S+G+ + R++ A+I    D +G+
Sbjct: 227 GKALQSGTSHNLGQHFTKAFDITYQSRDGKLENPYHTSWGV-STRLIGAIIMVHGDNRGL 285

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV-FWDDMGEQIGSQFAVADL 397
           + P  +AP ++ +I I+   +   D   +IY+ L  +G  V   DD     G +F   ++
Sbjct: 286 VLPPEIAPIQVVIIPIQQQKEGVLDKANEIYSSLKNLGIRVELDDDSKNSTGWKFNEYEM 345

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G PL++ +G + + ++ V I  R T  ++ +S++++
Sbjct: 346 KGVPLRIEIGPRDIQNNIVSISRRDTLEKDQISIDDI 382


>gi|313679172|ref|YP_004056911.1| prolyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
 gi|313151887|gb|ADR35738.1| prolyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
          Length = 478

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 4/169 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF+  D ++ YV   S+G+ + R++ A+I +  D +G+
Sbjct: 221 GKALQAGTSHFLGQNFARAFEITFQDQDLEEKYVWTTSWGL-STRMIGAIIMAHGDDQGL 279

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           I P  +AP ++ ++ I  K   +V  +A  ++   +   G  V  DD  +   G +F   
Sbjct: 280 ILPPRLAPIQVVVVPIYRKNTREVVLEAARELVREIRAAGVRVHLDDRDQYSPGYKFNEW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +L G PL++ +G + V      +K RL G +E + L ++      R   
Sbjct: 340 ELKGVPLRIEIGPRDVEAGHAVLKSRLGGEKEFIGLRDLPGLLPERLEG 388


>gi|300904575|ref|ZP_07122412.1| threonyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300403488|gb|EFJ87026.1| threonyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|315257476|gb|EFU37444.1| threonyl-tRNA synthetase [Escherichia coli MS 85-1]
          Length = 622

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +LS  G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---DYVNELTQKLSNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 605


>gi|307310711|ref|ZP_07590357.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|331647210|ref|ZP_08348304.1| threonine--tRNA ligase [Escherichia coli M605]
 gi|331673269|ref|ZP_08374037.1| threonine--tRNA ligase [Escherichia coli TA280]
 gi|281178789|dbj|BAI55119.1| threonyl-tRNA synthetase [Escherichia coli SE15]
 gi|306908889|gb|EFN39385.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|315061024|gb|ADT75351.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|315299748|gb|EFU58988.1| threonyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|323378405|gb|ADX50673.1| threonyl-tRNA synthetase [Escherichia coli KO11]
 gi|330911523|gb|EGH40033.1| threonyl-tRNA synthetase [Escherichia coli AA86]
 gi|331043993|gb|EGI16129.1| threonine--tRNA ligase [Escherichia coli M605]
 gi|331069467|gb|EGI40854.1| threonine--tRNA ligase [Escherichia coli TA280]
 gi|332343438|gb|AEE56772.1| threonyl-tRNA synthetase ThrS [Escherichia coli UMNK88]
          Length = 642

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---DYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|157158126|ref|YP_001463015.1| threonyl-tRNA synthetase [Escherichia coli E24377A]
 gi|157161181|ref|YP_001458499.1| threonyl-tRNA synthetase [Escherichia coli HS]
 gi|170019932|ref|YP_001724886.1| threonyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|193068904|ref|ZP_03049863.1| threonyl-tRNA synthetase [Escherichia coli E110019]
 gi|209919078|ref|YP_002293162.1| threonyl-tRNA synthetase [Escherichia coli SE11]
 gi|218695280|ref|YP_002402947.1| threonyl-tRNA synthetase [Escherichia coli 55989]
 gi|256018088|ref|ZP_05431953.1| threonyl-tRNA synthetase [Shigella sp. D9]
 gi|332279130|ref|ZP_08391543.1| threonyl-tRNA synthetase [Shigella sp. D9]
 gi|166987321|sp|A7ZMI6|SYT_ECO24 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987322|sp|A8A0R2|SYT_ECOHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083607|sp|B1IPK9|SYT_ECOLC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238065113|sp|B6IBD7|SYT_ECOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783522|sp|B7L6J2|SYT_ECO55 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157066861|gb|ABV06116.1| threonyl-tRNA synthetase [Escherichia coli HS]
 gi|157080156|gb|ABV19864.1| threonyl-tRNA synthetase [Escherichia coli E24377A]
 gi|169754860|gb|ACA77559.1| threonyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|192957699|gb|EDV88143.1| threonyl-tRNA synthetase [Escherichia coli E110019]
 gi|209912337|dbj|BAG77411.1| threonyl-tRNA synthase [Escherichia coli SE11]
 gi|218352012|emb|CAU97745.1| threonyl-tRNA synthetase [Escherichia coli 55989]
 gi|320197902|gb|EFW72510.1| Threonyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|323948091|gb|EGB44082.1| threonyl-tRNA synthetase [Escherichia coli H120]
 gi|324016472|gb|EGB85691.1| threonyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|332101482|gb|EGJ04828.1| threonyl-tRNA synthetase [Shigella sp. D9]
          Length = 642

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---DYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|71735831|ref|YP_274354.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|123747652|sp|Q48JS3|SYT_PSE14 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71556384|gb|AAZ35595.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 640

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 65/422 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISL 245
            I ++  + P   +G D       L +  ET +  + D    P    P E   +   I  
Sbjct: 414 DIELKLSTRPEKRVGSD------ELWERAETALASALDSAGLPYDLQPGEGAFYGPKIEF 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
           +                    L D L             G ++  GT    ++LP  +SA
Sbjct: 468 S--------------------LKDCL-------------GRVWQCGTLQLDFNLPIRLSA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + + V +    +G+      ++   ++G    W   +AP +  ++NI     
Sbjct: 495 EYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDKQA 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++
Sbjct: 552 ---DFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVR 608

Query: 420 HR 421
            R
Sbjct: 609 TR 610


>gi|291279885|ref|YP_003496720.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754587|dbj|BAI80964.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 640

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 160/406 (39%), Gaps = 47/406 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    + A  +EE  + G   +  P +  + LW  SG    Y + M    
Sbjct: 260 GLICWFPKGARIRSIIEAFWKEEHFKNGYEMLYTPHIGKSTLWETSGHLAFYQENMYSPM 319

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D +       P +      I++S ++SYR+LP  + ++   +R E      G++R R F 
Sbjct: 320 DIDGNEYFIKPMNCPFHIMIYKSKVRSYRDLPLRWAELGTVYRYERSGVLHGLLRVRGFT 379

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T E       ++    LR++   G +SI     + P   +G D   E    
Sbjct: 380 QDDAHII-CTQEQIIDEIKEVLNFSLRMWKAFGFESIKGYIATRPEKSVGDDAMWEKATQ 438

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           +  G              I     DF+       I E   A Y    D+   K+ D++  
Sbjct: 439 SLEG-------------AIKDSGIDFE-------IDEGGGAFYGPKIDL---KIKDAIGR 475

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
             +++    +          ++LP     T+   DGK+    M     +G++     V+ 
Sbjct: 476 EWQMTTIQFD----------FNLPERFDMTYIDKDGKEKRPFMVHRALLGSLERFFGVLI 525

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   IW   +AP ++ +IN+        + C++I  +L + G  V +D   E+IG 
Sbjct: 526 EHYAGAFPIW---LAPIQVRIINVS---DAQYEYCKEIEKKLKEEGIRVEFDSRNEKIGY 579

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +   A L   P  +I+G+  V    V ++ R    + ++   E I+
Sbjct: 580 KIREAQLQKIPHMIIIGNNEVEAKTVSVRLRNGENKNNLDFYEYIS 625


>gi|260893515|ref|YP_003239612.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865656|gb|ACX52762.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 637

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 152/393 (38%), Gaps = 58/393 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G    + + A+ R E  R G  E+  P L   +LW  SG +D Y KE +   + + + 
Sbjct: 267 PKGMIVRNELEALWRREHYRRGYQEIRTPILLKRELWERSGHWDHY-KENMYFLEIDGQP 325

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      I++  + SYR LP    ++ L  R EL     G+MR R F   DA+ 
Sbjct: 326 YAVKPMNCPGAILIYQQRVHSYRELPLRLAEMGLVHRHELSGVLHGLMRVRSFTQDDAHI 385

Query: 163 F---DLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           F   D   E      + +   Y ++F   + + L + P ++    +G D   E   LA +
Sbjct: 386 FCREDQVKEEILGIIDLVDYFYRQVFGFPYHVELSTRPEKS----MGDDHIWE---LATS 438

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +    + F                    I E   A Y    D H E   D L     
Sbjct: 439 ALKEALEERGFA-----------------YKINEGEGAFYGPKIDFHLE---DCL----- 473

Query: 277 VSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESS 332
              R  + G I   F    K+ L     + G DG+ H  V +     G++    A++   
Sbjct: 474 --GRTWQCGTIQLDFLMPEKFDL----FYIGEDGQRHRPVMLHRVIFGSLERFMAILIEH 527

Query: 333 HDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             G   +W   +AP ++ ++ I   H    R    +IY  LS+    V  D   E++  +
Sbjct: 528 FAGAFPLW---LAPVQVRILPITDRHHAYAR----QIYELLSRADLRVELDARNEKVSYK 580

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              A +   P  +++G K ++   V ++HR  G
Sbjct: 581 VREAQVQKIPYMLVIGDKEMNSGTVAVRHRSRG 613


>gi|196034766|ref|ZP_03102174.1| prolyl-tRNA synthetase [Bacillus cereus W]
 gi|195992809|gb|EDX56769.1| prolyl-tRNA synthetase [Bacillus cereus W]
          Length = 476

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|116620962|ref|YP_823118.1| prolyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122255000|sp|Q027I0|SYP_SOLUE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116224124|gb|ABJ82833.1| prolyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 480

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 132/327 (40%), Gaps = 62/327 (18%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   F   I SYR+LP  + Q     R ELR R   +R+ EFL ++ ++     
Sbjct: 110 PTSETIIGHFFSKWIHSYRDLPLLYNQWANVIRWELRTRM-FLRTTEFLWQEGHT----- 163

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +  ++ +     LRI                    DL  +              ++D 
Sbjct: 164 --AHSNHEEAVEEVLRIL-------------------DLYAQ-------------VAEDI 189

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           M  P+         I  + +  E++     + S        +++ +N       ++ G  
Sbjct: 190 MAMPV---------IKGVKTHAEKFAGALKSYS-------IEAMMQN----GLALQAGTS 229

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G  +       F+  +G+  YV   S+G+ + R++  +I +  D KG++ P  +AP 
Sbjct: 230 HDLGQNFGKAFDVQFQSKEGQLEYVWQTSWGV-STRLIGGLIMTHSDDKGLVLPPKLAPV 288

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K  ++ I   ++      E  +    ++G  V  D  G+  G++F   +  G P+ + +G
Sbjct: 289 KSVIVPIYRKEEERAAVLEAAHRIAKEIGAKVD-DREGQSPGAKFFHWERRGVPVVLELG 347

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEV 434
            + ++  K+ +K R TG +E +   EV
Sbjct: 348 PRDLASGKIVLKRRDTGTKEPIDQSEV 374


>gi|167629857|ref|YP_001680356.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|167592597|gb|ABZ84345.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 641

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 170/429 (39%), Gaps = 61/429 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +L L T  I +   G   + P G    + +    REE  R G  E+  P + 
Sbjct: 244 RDHRRIGQELELYT--ILEEGPGFPFFFPKGMIIRNELENFWREEHARAGYREVRTPIIL 301

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +  LW  SG + +Y +E + +   +++     P +      +++  I SYR+LP    ++
Sbjct: 302 NRSLWERSGHWANY-RENMYVTQIDEEDYCVKPMNCPGGMLVYKQAIHSYRDLPLRMGEL 360

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-------GSKHSYNKMFVSYLRIFHR 187
            L  R E+     G+MR R F   DA+ F +TP        G     ++M+ ++   +H 
Sbjct: 361 GLVHRHEISGALHGLMRVRCFTQDDAHIF-MTPGQIKDEIIGVIELIDRMYKTFGFAYH- 418

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           + L + P +A    +G D   E   LA     +   +K  MD+ I   +  F        
Sbjct: 419 VELSTKPEKA----MGSD---EIWELATNSLEEALKAKG-MDYKINPGDGAF-------- 462

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKG 304
                   Y    D H   L D +        R  + G I   F    ++ L    T+ G
Sbjct: 463 --------YGPKIDFH---LKDCI-------GRTWQCGTIQLDFQMPERFDL----TYVG 500

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++   + G    +P  +AP +  ++ I        +
Sbjct: 501 EDGQKHRPVMIHRVVFGSIERFIGILTEHYAGA---FPTWLAPVQARVLPITDRHH---E 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + + L+K G  V  D   E+IG +     +   P  ++VG K   +  V ++ R  
Sbjct: 555 YAASVRSALAKQGVRVEVDGRNEKIGYKIREGQVQKIPYLLVVGDKEAENGAVAVRKRGE 614

Query: 424 GIREDMSLE 432
           G +  M+L+
Sbjct: 615 GDKGAMALD 623


>gi|228944201|ref|ZP_04106580.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228815590|gb|EEM61832.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 476

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKELISMDQL 376


>gi|228931896|ref|ZP_04094792.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827876|gb|EEM73614.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 476

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|86137404|ref|ZP_01055981.1| threonyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85825739|gb|EAQ45937.1| threonyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 648

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 149/403 (36%), Gaps = 58/403 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    +   +R  Q R G +E++ P +    LW  SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPNGWKIYTTLQDYMRRMQERDGYVEVNTPQVVDRKLWEASGHWDKYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      +F   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEHAREKAVNALKPMNCPCHVQVFNQGLKSYRDLPLRMAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    S    F+++L +++  LG  +  ++  + P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CAEDQIESETAKFIAFLSKVYADLGFHNWTIKLSTRPEKR 437

Query: 202 IGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           IG D S + +   L D       C     ++                 ++E   A Y   
Sbjct: 438 IGSDESWDLVEKALGDA------CKAAGYEY----------------ELLEGEGAFYGPK 475

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGS 316
            +     L D++  N +     ++           +LP  + A F GADG  H    +  
Sbjct: 476 LEF---TLTDAIGRNWQCGTLQVDP----------NLPERLEANFIGADGNKHRPFMLHR 522

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G+      ++   H GK   W   +AP ++ + +I +      D   ++   L   G
Sbjct: 523 ATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITSD---ADDYVHEVVTELQAAG 576

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                D   E+I  +     L   P+ + +G + V +  V I+
Sbjct: 577 VRAEADIRNEKINYKVREHSLGKVPVILAIGHREVEERTVSIR 619


>gi|300924761|ref|ZP_07140703.1| threonyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300419049|gb|EFK02360.1| threonyl-tRNA synthetase [Escherichia coli MS 182-1]
          Length = 642

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---DYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVQSGKVAVRTRRGKDLGSMDVNEVI 625


>gi|264679166|ref|YP_003279073.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209679|gb|ACY33777.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 687

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 143/389 (36%), Gaps = 52/389 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 303 IDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNGYQEVKAPQILDKGLWEKTGHWDKYRE 362

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    D   +     P +      IF+  IKSYR+LP  F +     R+E      G+M
Sbjct: 363 NMF-TTDSEKREYALKPMNCPGHIIIFKQGIKSYRDLPLRFGEFGNCHRNEPTGSLHGIM 421

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDL 206
           R R F   D + F    E    +    F S L +++   G  +I  R  + P   IG D 
Sbjct: 422 RVRAFTQDDGHIF--CTEDQIQAEVTAFTSLLQKVYADFGFTNILYRLSTRPEKRIGTDE 479

Query: 207 SHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           + +     LA+ G     C  +++    P E   +   I                     
Sbjct: 480 AWDKAENALAE-GLRASGCEFEYL----PGEGAFYGPKIEYT------------------ 516

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L D+L        R  + G I       ++P  + A F G DG+ H   M    I G+
Sbjct: 517 --LKDAL-------GREWQCGTI---QVDPNMPERLDAEFVGEDGERHRPIMLHRAILGS 564

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVF 380
           +     ++   H G    W   +AP + +++NI  A     ++  +K+   L      V 
Sbjct: 565 LERFIGILVEHHSGALPAW---LAPVQAAVLNITDAQADYAQEVAQKLQKALPNQSLRVV 621

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            D   E+I  +     +   P  ++ G K
Sbjct: 622 TDLRNEKITYKIREHSMQKLPYILVAGDK 650


>gi|219685452|ref|ZP_03540270.1| proline--tRNA ligase [Borrelia garinii Far04]
 gi|219673008|gb|EED30029.1| proline--tRNA ligase [Borrelia garinii Far04]
          Length = 488

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 170/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P L     L  E    + +  E   + +   +++    I  PT E ++ +++
Sbjct: 59  TGHENAYFPMLIPYGFLEKEKDHIEGFSPEFAIIKEAGGESLAEPLILRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDLYKRF------------------------MEDYLAIPVFCGKK-------SEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVNALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRIEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTIVRR 365


>gi|323486231|ref|ZP_08091559.1| hypothetical protein HMPREF9474_03310 [Clostridium symbiosum
           WAL-14163]
 gi|323400449|gb|EGA92819.1| hypothetical protein HMPREF9474_03310 [Clostridium symbiosum
           WAL-14163]
          Length = 483

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 133/333 (39%), Gaps = 67/333 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAY 161
           M   PT E +  D +   I+SYR+LP  + Q    +++    RP    +RSREFL ++ +
Sbjct: 116 MCVRPTSETLFCDFYARDIQSYRDLPRLYNQWCSVVRWEKTTRP---FLRSREFLWQEGH 172

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   T E ++     M   Y                                AD      
Sbjct: 173 TAHATAEQAEERTELMLNLY--------------------------------AD------ 194

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           FC +      +  + TD +             A Y   + +H+ K   S           
Sbjct: 195 FCEEVLAMPVVRGKKTDKEKFAGAE-------ATYTIEALMHDGKALQS----------- 236

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
              G    FG  ++      +   D +  YV   S+G+   R++ A+I    D  G++ P
Sbjct: 237 ---GTSHNFGDGFAKAFEIQYLDKDNQLKYVHQTSWGM-TTRLIGAIIMVHGDDNGLVLP 292

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++ ++ I+ + +   D   ++   LS  G  V  DD  +  G +F+ +++ G P
Sbjct: 293 PRIAPVQVMIVPIQQNKEGVLDKAYELKEVLS--GFKVKVDDSDKSPGWKFSESEMRGIP 350

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++V +G + +++++  +  R T  +  +SL+E+
Sbjct: 351 VRVEIGPRDLAENQAVLVRRDTHEKITVSLDEI 383


>gi|229194773|ref|ZP_04321562.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1293]
 gi|228588716|gb|EEK46745.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1293]
          Length = 502

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/410 (20%), Positives = 159/410 (38%), Gaps = 81/410 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEML- 94
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 95  -------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRP 145
                  +LA+R    +   PT E +  + F   ++SY +LP  + Q    +++    RP
Sbjct: 122 VTHGGNEKLAER----LCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP 177

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
               +R+ EFL ++ ++   T E S+     +   Y                        
Sbjct: 178 ---FLRTTEFLWQEGHTIHETAEESQAETLNILNLYAS---------------------- 212

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                           FC +D++  P I  + T+ +             A Y   S +H+
Sbjct: 213 ----------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD 248

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                          + ++ G    FGT +S      F    GK  YV   S+G+ + R+
Sbjct: 249 --------------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRM 293

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D  
Sbjct: 294 IGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKALELQGHIQKVA-RVKIDAS 352

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +  G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 353 NKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 402


>gi|160941555|ref|ZP_02088887.1| hypothetical protein CLOBOL_06453 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435520|gb|EDP13287.1| hypothetical protein CLOBOL_06453 [Clostridium bolteae ATCC
           BAA-613]
          Length = 479

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      F   D    YV   S+G+ + R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFDIQFTDKDNTLKYVHQTSWGV-STRIIGAIIMVHGDDNGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +I ++ ++   +   D   ++  RL+K G  V  DD  +  G +FA  ++ 
Sbjct: 284 VLPPRIAPVQIMVVPVQQQKEGVLDKAYELKERLTKAGYAVKVDDTDKSPGWKFADCEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL+V +G K +  ++  +  R    +  +SL+E+
Sbjct: 344 GVPLRVEIGPKDIEKNQAVLVRRDNHEKSFVSLDEL 379


>gi|324324493|gb|ADY19753.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 476

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|315648987|ref|ZP_07902081.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315275668|gb|EFU39022.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 645

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/412 (20%), Positives = 167/412 (40%), Gaps = 53/412 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  WLP G K    +   I + + R G   +  P L + +L+  SG ++ Y ++M  
Sbjct: 263 GQGLPIWLPNGAKLRRTLERYIVDMEERLGYQHVYTPVLGNVELYKTSGHWEHYQEDMFP 322

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             + +++ ++  P +      +++S + SYR+LP    ++ ++ R E+     G+ R R 
Sbjct: 323 KMEMDNEELVLRPMNCPHHMMVYKSDMHSYRDLPIRIAELGMQHRYEMSGALTGLHRVRA 382

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D++ F   P+  K  + ++    + ++   G+     R         LS+      
Sbjct: 383 MTLNDSHIF-CRPDQIKEEFARVIQLIMTVYKDFGIHDYRFR---------LSYR----- 427

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP----------YAATSDVHN 264
           D  +T+ +   D M + +            L  +VE    P          Y    DV  
Sbjct: 428 DPQDTEKYFQNDEM-WEMSQR--------MLREVVESLDMPFYEAEGEAAFYGPKLDV-- 476

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMR 323
            ++  +L + + +S   ++    F    ++ L     + G DG+ H   +   GI G M 
Sbjct: 477 -QIRTALGKEETLSTVQLD----FLLPERFEL----EYVGDDGQKHRPVVIHRGILGTME 527

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A +  +  G   +W   ++P ++ +I +        D  +++  +L   G  V  D 
Sbjct: 528 RFTAFLLENFAGALPLW---LSPVQVKVIPV---SNAFEDYAKEVAEKLQFAGISVEPDL 581

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E++G +   A L   P   IVG    +   V ++ R  G     SL+++I
Sbjct: 582 RNEKLGYKIREAQLEKIPYMFIVGENEKNAGAVSVRKRGEGDIGAQSLDDII 633


>gi|51978320|gb|AAU19870.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 502

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 122 VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 178

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 179 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 212

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 213 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +
Sbjct: 249 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGL 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 298 IMVHGDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKVA-RVKIDASNKTP 356

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 357 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 402


>gi|148988673|ref|ZP_01820106.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147925874|gb|EDK76949.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 600

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 149/374 (39%), Gaps = 48/374 (12%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I  ++  +G   +  P L S +L+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPNGATIRRELERYIVNKELASGYQHVYTPPLASVELYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      +F+ H+ SYR LP    +I +  R E      
Sbjct: 314 QEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHVHSYRELPIRIAEIGMMHRYEKSGALT 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 374 GLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFR----------- 421

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------VEQWTAPYAATSD 261
              + L D  +T  +   D M      EN       +L+ +       E   A Y    D
Sbjct: 422 ---LSLRDPQDTHKYFDNDEM-----WENAQTMLRAALDEMGVDYFEAEGEAAFYGPKLD 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IG 320
           +   ++  +L + + +S   ++    F    ++ L     + GADG+DH   M   G I 
Sbjct: 474 I---QIKTALGKEETLSTIQLD----FLLPERFDL----KYIGADGEDHRPVMIHRGVIS 522

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M    A++  ++ G    W   +AP +++LI +     V  D   ++  +L   G    
Sbjct: 523 TMERFTAILIENYKGAFPTW---LAPHQVTLIPVSNEKHV--DYAWEVAKKLRDRGVRAD 577

Query: 381 WDDMGEQIGSQFAV 394
            D+  E++  QF +
Sbjct: 578 VDERNEKM--QFKI 589


>gi|224826514|ref|ZP_03699615.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224601115|gb|EEG07297.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 632

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 159/401 (39%), Gaps = 56/401 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G +   +V   +R      G  E+  P +    LW +SG +++Y +
Sbjct: 255 LQDEAPGMVFWHPKGWQLWQSVEQYMRATLAEAGYQEIRTPMVMDRILWEKSGHWENYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F   ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAVKPMNCPGH----VQVFNQGLRSYRDLPLRYAEFGACHRNEPSGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++N++    +R++ + G  ++ ++    P    
Sbjct: 371 GIMRVRGFVQDDAHIFCTEEQIIDEAKAFNEL---TMRVYRQFGFDNVSVKLSLRPEKYS 427

Query: 206 LSHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            + E    A+ G  +    C  ++ + P                      A Y    + H
Sbjct: 428 GTLEAWDRAENGLREALRACGIEWEELPGEG-------------------AFYGPKIEYH 468

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
              + D+L        R  + G +      Y LP  + A +   D  +   V +    +G
Sbjct: 469 ---IKDAL-------GRSWQCGTL---QLDYVLPERLGAEYVAEDNSRKRPVMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++  +H G   +W   +AP ++ ++NI    +   D    +   L K G  V 
Sbjct: 516 SLERFLGILIENHAGAFPLW---LAPVQMVVMNIT---EAQADYAASVVQTLKKQGFRVE 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   E+I  +     L   P Q+IVG K  +D  + ++ R
Sbjct: 570 LDLRNEKISYKIREHSLQKLPYQIIVGDKEKADGLIAVRAR 610


>gi|118444060|ref|YP_877833.1| threonyl-tRNA synthetase [Clostridium novyi NT]
 gi|166223336|sp|A0PZN1|SYT_CLONN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118134516|gb|ABK61560.1| threonyl-tRNA synthetase [Clostridium novyi NT]
          Length = 637

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 165/412 (40%), Gaps = 51/412 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +   G   + P G    + +    RE   + G  E+  P + +  LW +SG +D Y +
Sbjct: 255 LKEEGPGFPFFYPKGMILRNTLENYWREMHEKAGYGEIRTPIILNEKLWHQSGHWDHYKE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      +++S + SYR LP    ++ L  R E      G+
Sbjct: 315 NMYFTKIDGEDYAI--KPMNCPGSILVYKSDLHSYRELPIRLGELGLVHRHEYSGALHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYN--KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           MR R F   DA+ F    + +       KM  ++  +F       +  R E   +G D  
Sbjct: 373 MRVRNFTQDDAHIFMTKEQITSEILGVIKMIDNFYSLFGFEYFVELSTRPEDS-MGSDED 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A T       ++  +++ I   +  F                Y    D H   L
Sbjct: 432 WE----AATNGLIKALNEAGLEYKINEGDGAF----------------YGPKIDFH---L 468

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMR 323
            D L        R  + G I   F    ++ L    ++ GADG+ H   M    I G++ 
Sbjct: 469 RDCL-------GRTWQCGTIQLDFQMPERFDL----SYVGADGEKHRPVMAHRVIFGSIE 517

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI   +QV  + C++I   L++ G  V  D 
Sbjct: 518 RFIGILTEHYAGA---FPTWLAPVQVKIMNI-TDNQV--EYCKEIQKVLNENGIRVELDL 571

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E+IG +   A L   P  +++G K +++  + ++ R  G    M+L + +
Sbjct: 572 RNEKIGYKIREAQLQKIPYMLVLGDKEMNEKTIAVRARKQGDLGAMNLTDFV 623


>gi|320529200|ref|ZP_08030292.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138830|gb|EFW30720.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 639

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 160/424 (37%), Gaps = 51/424 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    + +    RE   R G  E+S P + S  LW  SG +  Y +
Sbjct: 257 LHEEGPGFPFFHPNGMILRNELLNYWREVHRRYGYSEISTPVILSRKLWETSGHWFHYRE 316

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      ++RS + SYR+LP    ++ L  R EL     G+
Sbjct: 317 NMYTTQIDEEDYAI--KPMNCPGCMLVYRSQLHSYRDLPLRLAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F   DA+ F +TPE  +         +  ++   GL S      + P     S E
Sbjct: 375 FRVRNFTQDDAHLF-VTPEQIEGEIQHTIDLFDEVYRTFGL-SYKAELSTRPDDSMGSDE 432

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              LA +G  +              EN   D I++     E   A Y    D H   L D
Sbjct: 433 MWELATSGLQKAL------------ENRGLDYIVN-----EGDGAFYGPKIDFH---LRD 472

Query: 270 SLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
           S             +G  +  GT     SLP     T+ G DG+ H  V +     G++ 
Sbjct: 473 S-------------IGRTWQCGTIQLDMSLPEKFDLTYVGEDGEKHRPVMLHRVVYGSIE 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++  +  G   +W   + P ++ ++ I        +  E++  R+   G  V  D+
Sbjct: 520 RFIGILIENFAGAFPVW---MTPVQVRILPITERHA---EYAEELRKRMFDRGIRVEVDN 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +   + +   P  ++VG +      V ++         MS ++ I +   + +
Sbjct: 574 RNEKTGYKIRESQVKKTPYTLVVGDQEQESGTVALRKYGEKDSTVMSADDFIAFVEKKIA 633

Query: 444 NNRP 447
              P
Sbjct: 634 ERSP 637


>gi|126459705|ref|YP_001055983.1| prolyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|166980146|sp|A3MV50|SYP_PYRCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126249426|gb|ABO08517.1| prolyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 487

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G + Y GTK++     T+   DG        SYGI + R +AA++ +  D  G 
Sbjct: 226 GRALQIGTVHYLGTKFTEVFEVTYLAPDGSRRLAHTTSYGI-SERSIAAMLITHGDDAGT 284

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  +AP ++ ++ I   +    V   A E+    L + G  V  D   ++  G +F  
Sbjct: 285 VIPPKLAPIQVVVVPIFYGEEEKGVVMPAAEQAAKALREAGFRVHVDGRDDKTPGWKFYY 344

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +L G PL+V VG + V   +V +  R T  +  ++++E+++
Sbjct: 345 WELRGVPLRVEVGKRDVEGRQVVVARRDTLAKYAVAVDELVD 386



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG Y W P G K   NV A+IR   + TG  E+  P     + +  ES     + KE+  
Sbjct: 40  KGAYVWRPYGMKIRRNVEALIRRLHDETGHEEVLFPVFIPYEFFGKESEHIRGFEKEVFW 99

Query: 96  LADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++   +  + ++  PT E  +  + +  ++ Y++LP   YQI   FR E +    ++R R
Sbjct: 100 VSKGGEGGERLVLRPTSETAIMPMVKLWVQDYKDLPLRLYQIVSVFRAETKMTHPMIRLR 159

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           E  M K+A++  +  E ++    +    Y RIF  + L
Sbjct: 160 EISMFKEAHTVHVDREDAERQVREAVEIYKRIFDEMCL 197


>gi|195387892|ref|XP_002052626.1| GJ17652 [Drosophila virilis]
 gi|194149083|gb|EDW64781.1| GJ17652 [Drosophila virilis]
          Length = 745

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 172/410 (41%), Gaps = 48/410 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +  +IR E  + G  E+  P + +A LW+ SG +  Y   
Sbjct: 360 HELSPGSCFFQPRGAHIYNTLMNLIRGEYRKRGFQEVISPNIYNAKLWMTSGHWQHYADN 419

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ R
Sbjct: 420 MFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTR 478

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
            R F   DA+ F   PE  K S  K  + +LR  + +   S  +   + P    G+L   
Sbjct: 479 VRRFQQDDAHIF-CAPEQIK-SEMKGCLDFLRHVYTIFGFSFQLVLSTRPDKYLGELEQ- 535

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                D  E  +  ++   +F +P +    D             A Y    D+    + D
Sbjct: 536 ----WDAAEKAL--AESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMD 574

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
           +L    + +   ++    F    +++L     +   DG K   V +    +G++  + A+
Sbjct: 575 ALKRPFQCATIQLD----FQLPIRFNL----NYIADDGEKKRPVIIHRAILGSVERMIAI 626

Query: 329 IESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYAR--LSKVGCDVFWDDMG 385
           +  ++ GK   WP  ++P ++ ++ +  A+D+  +   +++YA   +S+  CD      G
Sbjct: 627 LTENYAGK---WPFWLSPRQVMVVPVGPAYDEYAKSVRDQLYAAGFMSEADCDA-----G 678

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           + +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I
Sbjct: 679 DTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELI 728


>gi|221061291|ref|XP_002262215.1| bi-functional aminoacyl-trna synthetase [Plasmodium knowlesi strain
           H]
 gi|193811365|emb|CAQ42093.1| bi-functional aminoacyl-trna synthetase,putative [Plasmodium
           knowlesi strain H]
          Length = 715

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 125/332 (37%), Gaps = 63/332 (18%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M  +F   I+S+R+LP    Q     R E +     +R+REFL ++ +    T 
Sbjct: 327 PTSETIMYSVFSKWIRSHRDLPLKLNQWNTVVRWEFKQPTPFIRTREFLWQEGH----TA 382

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++    KM    L ++ R   + + +    G                           
Sbjct: 383 HKNEEEAVKMVFDILDLYRRWYEECLAVPIIKG--------------------------- 415

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               I SE   F              A + +T++         + EN R     I+    
Sbjct: 416 ----IKSEGEKFGG------------ANFTSTAEAF-------ISENGR----AIQAATS 448

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            Y GT ++      F+  + K  YV   S+G    R +  +I +  D KG++ P  VA F
Sbjct: 449 HYLGTNFAKMFKIEFEDENEKKQYVHQTSWGC-TTRSIGIMIMTHGDDKGLVLPPKVAKF 507

Query: 348 KISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQ 403
           K+ ++ I      + V  + C+ I   L     +   DD      G +F   +L G P++
Sbjct: 508 KVVIVPILYKNTDENVIFNYCKDIEKVLKNAQINCILDDRELYSPGYKFNHWELRGVPIR 567

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           + VG K + ++      R T  + ++  E V+
Sbjct: 568 IEVGPKDIQNNSCLFVRRDTNEKFNVKKESVL 599


>gi|156937156|ref|YP_001434952.1| prolyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|172044461|sp|A8A9E3|SYP_IGNH4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156566140|gb|ABU81545.1| prolyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 478

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++  + RV    +++G + + G  +S+P    F   DG   YV   SYG+ + RV+A+
Sbjct: 212 FDTVMPDGRV----LQIGTVHHLGQNFSVPFEVRFHTEDGDKDYVWQTSYGL-SDRVIAS 266

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWDD 383
           ++    D +G++ P  VAP ++ ++ I   ++  +    +  +++   L   G     DD
Sbjct: 267 LVAVHGDERGLVLPPEVAPVQVVIVPIPQKEEEQQRKVLEEAKRVEEELKARGWRTVLDD 326

Query: 384 MGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E   G+++   +L G P ++ +G K V   ++ +  R
Sbjct: 327 RDELTPGAKYYEWELKGVPFRIEIGKKEVEGDELTVARR 365



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 6/160 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG+  W P G K    V  IIR+  + TG  E+  P L    L   ES     +  E+  
Sbjct: 31  KGMGVWPPFGFKLRKLVLNIIRDLLDSTGHEEVLFPVLIPKTLLEKESEHIRGFEGEVFW 90

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  ++ +    I SY+ LP   YQI   +R E +    ++R
Sbjct: 91  VTKGGHEDLDVPLALRPTSETAISYMESFWISSYKQLPMKLYQIVPVYRYETKATRPLIR 150

Query: 152 SREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            RE    K+A++   + EG+     +    Y ++F RLG+
Sbjct: 151 LREVSTFKEAHTAHESFEGADSQCAEAIEIYKKVFDRLGI 190


>gi|16331761|ref|NP_442489.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501062|sp|Q55806|SYT_SYNY3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1001722|dbj|BAA10559.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 603

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/428 (20%), Positives = 174/428 (40%), Gaps = 64/428 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  W P G      +   +++EQ + G + +  P +   DL+ +SG +  Y ++M   +
Sbjct: 217 GLPLWTPKGTIIRTILEDFLKQEQIKRGYLPVVTPHIARVDLFKQSGHWQKYQEDMFPMM 276

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           A+  ++A      +  P +      I++S ++SYR+LP    +    +R E      G+ 
Sbjct: 277 AESPEEAAQEMGFVLKPMNCPFHIQIYKSELRSYRDLPLRLAEFGTVYRYEQSGELGGLT 336

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGP-IGG 204
           R R F + D++ F +TP+     +  +    L +F  L LK+   R      ES   IG 
Sbjct: 337 RVRGFTVDDSHLF-VTPDQLDEEFLSVVDLILTVFKSLQLKNFKARLSFRDPESDKYIGS 395

Query: 205 DLSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFD---DIISLNSIVEQWTAPYAATS 260
           D + E       G  +    +  MD F  P E   +    D I  +++  +W        
Sbjct: 396 DEAWE----KAQGAIRRAVQELEMDYFEAPGEAAFYGPKLDFIFQDALEREW-------- 443

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSY 317
                                 ++G +      Y+LP      +  ADG +   V +   
Sbjct: 444 ----------------------QLGTV---QVDYNLPERFDLEYIAADGSRQRPVMIHRA 478

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G++  +  ++   + G   +W   +AP ++ L+ +   D+    A + I  ++  +G 
Sbjct: 479 PFGSLERLIGILIEEYAGDFPLW---LAPIQVRLLAVS--DEFLPFA-QSIVQQMQSLGL 532

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D  G+++G     A+    P+  ++G+K V  + + I+ R +G   ++ + EV+  
Sbjct: 533 RAEVDTSGDRLGKMIRNAEKQKIPVMAVIGAKEVEANALNIRTRASGELGEIPVTEVLEK 592

Query: 438 ASHRFSNN 445
                +N+
Sbjct: 593 LQATVTNH 600


>gi|302874879|ref|YP_003843512.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307690504|ref|ZP_07632950.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577736|gb|ADL51748.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 635

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 155/403 (38%), Gaps = 51/403 (12%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           +LP G    +++    R    + G  E+  P + S +LW +SG +D Y KE +     ++
Sbjct: 265 FLPKGMIVRNSLEDYWRVIHKKAGYQEIKTPIILSEELWHQSGHWDHY-KENMYFTSIDE 323

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           K     P +       +++ + SYR LP    ++ L  R EL     G+MR R F   DA
Sbjct: 324 KPFAVKPMNCPGSILAYKNALHSYRELPLRLAELGLVHRHELSGALHGLMRVRCFTQDDA 383

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           + F    + +    +   +  +  F++                 +   E+ V   T    
Sbjct: 384 HIFMTKDQITDELLD--LIKLIDDFYK-----------------NFGFEYFVELSTRPEN 424

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              S +  +       T  D       I E   A Y    D H   L DS          
Sbjct: 425 SMGSDEDWELATNGLRTALDKAGLSYKINEGDGAFYGPKIDFH---LRDS---------- 471

Query: 281 GIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSH 333
              +G  +  GT    + LP      + G DG+ H  V +     G++ R +  +IE   
Sbjct: 472 ---IGRTWQCGTIQLDFQLPERFDIDYIGPDGEKHRPVMVHRVVFGSIERFIGILIEHFA 528

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                 +P  +AP ++ ++NI       +   E+I   L + G  V  D   E+IG +  
Sbjct: 529 GA----FPAWLAPVQVKVMNIT---DSSKGYVEEIARVLEEKGIRVESDLRNEKIGYKIR 581

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            A L   P  +++G K +++  + ++ R  G    MS+EE  N
Sbjct: 582 EAQLQKIPYMIVIGEKEMNEKTIAVRSRKDGDIGTMSIEEFSN 624


>gi|218901598|ref|YP_002449432.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228925648|ref|ZP_04088737.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120054|ref|ZP_04249309.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|218539056|gb|ACK91454.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228663520|gb|EEL19105.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|228834126|gb|EEM79674.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 476

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|303229391|ref|ZP_07316181.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515927|gb|EFL57879.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 636

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 161/395 (40%), Gaps = 47/395 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I +   G   +LP G    + +    RE  +     E+  P + +  LW  SG +D Y 
Sbjct: 256 VIKEEGPGFPFFLPKGMALRNELENFWREVHHDFEYDEIRTPIILNKHLWETSGHWDHY- 314

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +     +D+     P +      ++++ + SYR+LP  + ++ L  R EL     G+
Sbjct: 315 RENMYTTIIDDEEYAIKPMNCPGGILVYQNEMHSYRDLPLRYAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSH 208
            R R F   DA+ F + PE  +    K+   + RI+ + GLK  + +  +     GD   
Sbjct: 375 FRVRAFTQDDAHVF-MLPEQMQSELMKVIELFDRIYSQFGLKYHVELSTKPDNAMGD--- 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + I  A T   +       +D+ I   +  F                Y    D H E   
Sbjct: 431 DAIWEAATEALRNAIEAKGIDYVINPGDGAF----------------YGPKLDYHIE--- 471

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVV 325
           DSL        R  + G I       +LP   +  + G DG+ H  + +     G+M   
Sbjct: 472 DSL-------GRTWQCGTI---QLDMNLPERFNVEYIGEDGQKHRTIMIHRACFGSMERF 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             ++   + G    +P  +AP ++ ++ I + H +      +++  R   V  +V  DD 
Sbjct: 522 IGILTEHYAGA---FPTWMAPVQVKVLPISEKHVEYANQLAKQM--RHDYVRVEV--DDR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            E+IG +   A +   P  ++VG K + D+ V ++
Sbjct: 575 NEKIGYKIRQAQMEKVPYMLVVGDKEMEDNSVNVR 609


>gi|251798759|ref|YP_003013490.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247546385|gb|ACT03404.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 645

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 163/401 (40%), Gaps = 55/401 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G K    +   I + + R G   +  P L + +L+  SG ++ Y ++M  +
Sbjct: 264 QGLPLWLPNGAKVRRTLERYIVDLEERLGYEHVYTPVLANVELYKISGHWEHYSEDMFPV 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      +++S ++SYR+LP    ++    R E+     G+ R R  
Sbjct: 324 MALDNEELVLRPMNCPHHMMVYKSDMRSYRDLPVRIAEMGTMHRYEMSGALTGLHRVRAM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++     +++   G+K    R         LS+      D
Sbjct: 384 TLNDAHIF-CRPDQIKEEFARVVNLIRKVYEDFGIKEYRFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP----------YAATSDVHNE 265
             +T+ +   D M + +            L  +VE+   P          Y    DV   
Sbjct: 429 PQDTEKYFQNDEM-WEMSQR--------MLREVVEELGLPFFEAEGEAAFYGPKLDV--- 476

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRV 324
           ++  +L + + +S   ++    F    ++ L     + G DGK H   +   G I  M  
Sbjct: 477 QIKTALGKEETLSTAQLD----FLLPDRFEL----EYIGEDGKKHRPVVIHRGIISTMER 528

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDD 383
           + A +  +  G   +W   ++P +  +I +  A++   R+  EK    L   G  V  D 
Sbjct: 529 MTAFLLENFAGALPLW---LSPVQAKVIPVSTAYEAYAREVEEK----LQLAGIRVESDL 581

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             E++G +   A L   P  ++VG        V ++ R  G
Sbjct: 582 RNEKLGYKIREAQLEKLPYMLVVGENEAQSGSVSVRKRGEG 622


>gi|302542211|ref|ZP_07294553.1| proline-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459829|gb|EFL22922.1| proline-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 471

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 141/350 (40%), Gaps = 73/350 (20%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++ + F   ++SYR+LP    Q     R ELRPR   
Sbjct: 99  GKEL-------EEPVVVRPTSETIVNEYFSKWVQSYRDLPLLINQWANVVRWELRPRL-F 150

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E ++    ++        HR                      
Sbjct: 151 LRTTEFLWQEGHTAHATYEDAREFAARI--------HR---------------------- 180

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                      V+   DFM+           ++++++ ++ + TA       V+   L  
Sbjct: 181 ----------DVYA--DFME-----------NVLAMDVVLGRKTARERFAGAVNTLTLEG 217

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            + + K      +++G     G  ++   +  +   DG+   V   S+G    R+V A++
Sbjct: 218 MMGDGK-----ALQLGTSHELGQNFARAFNTRYLSRDGEQELVWQTSWG-STTRMVGALV 271

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               D  G+  P  +AP +  ++ +K  D V   A  +   RL+  G  V  DD  +   
Sbjct: 272 MMHGDDDGLRLPPRLAPVQAVVLAVKGDDAVL-AAVRETGDRLAAAGVRVQVDDRTDMPF 330

Query: 390 SQFAV-ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
            + AV  +L G P++V +G + +      +  R+ G    +R D+  E V
Sbjct: 331 GRRAVDWELRGVPVRVEIGPRDLEAGTATLARRIPGGKEPVRTDLVAETV 380


>gi|269792334|ref|YP_003317238.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099969|gb|ACZ18956.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 631

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 155/415 (37%), Gaps = 62/415 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I     G   + P G   L+ +    + E  R G  E+  P +    LW  SG +D Y +
Sbjct: 252 IQPEGPGFPFFHPKGMVILNELVDFWKREHKRRGYNEIRTPLILDRSLWERSGHWDHY-R 310

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           + +     +D+     P +      +F+S  +SYR+LP    ++ +  R E      G+M
Sbjct: 311 DNMYFTSIDDRPFAIKPMNCPGGILVFKSSTRSYRDLPLRMSELGVVHRHERSGVLHGLM 370

Query: 151 RSREFLMKDAYSFDLTPEGSKHS----YNKMFVSYLRIF---HRLGLKSIPMRAESGPIG 203
           R R F   DA+ +  TP+          + M   Y ++F   +R+ L + P         
Sbjct: 371 RVRCFTQDDAHIY-CTPDQVGDEIAGVIDLMKYVYSQVFGFNYRVELSTRPDNYMG---- 425

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              S E   LA+    Q   +    D+ I   +  F                Y    D H
Sbjct: 426 ---SLELWNLAEEKLKQTLEATG-TDYKINPGDGAF----------------YGPKIDFH 465

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSY 317
            E                  +G  +  GT    + +P     ++ GADG DH  V +   
Sbjct: 466 LED----------------SIGRTWQCGTIQLDFQMPEKFDVSYVGADGADHRPVMIHRT 509

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G++     ++   + G    W   +AP ++ ++ +K       D   ++ A L   G 
Sbjct: 510 VFGSLERFLGILIEHYAGAFPFW---LAPVQVRVLPVKPE---FEDRSRQVEAALKSWGV 563

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            V  D   E++G +   A L   P  +++G+K      V ++HR  G    MS++
Sbjct: 564 RVEVDVRDEKLGKKIRDAQLSKVPYMIVIGAKEAETGGVSVRHRSDGDLGTMSMD 618


>gi|282859312|ref|ZP_06268424.1| proline--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282587892|gb|EFB93085.1| proline--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 493

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 89/170 (52%), Gaps = 5/170 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I K  +Q+ +  D  + +   L + G  V +D+   ++ G +FA 
Sbjct: 295 VLPPKIAPIQVVIVPIFKGEEQLQQLTDKLQPVIDDLREAGITVKFDNSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +L G P+++ +G + + ++ +E+  R T  +E +S + + +Y  +  ++
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIEVMRRDTLEKESVSFDGIADYVKNLLND 404


>gi|188994851|ref|YP_001929103.1| prolyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|259511612|sp|B2RJG1|SYP_PORG3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188594531|dbj|BAG33506.1| prolyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 493

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   + TF   DG   +V   S+G+ + R++ A+I S  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFNVTFADKDGNRDFVWATSWGV-STRLMGALIMSHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP+++ ++ I  +++      EK   I   L   G  V +D+   ++ G +FA 
Sbjct: 295 VLPPKLAPYQVVIVPIYRNEEQLAQIDEKATQIIQALRAKGISVKYDNSDNKKPGWKFAE 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +L G P+++ +G++ + ++ +EI  R T  +E + L+ +
Sbjct: 355 YELKGVPVRLAMGARDLENNTIEIARRDTLTKETVGLDGI 394



 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I+S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIVRPTSETIIWNTYKNWIQSHRDLPILCNQWANVVRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLT 166
           ++   T
Sbjct: 177 HTAHAT 182


>gi|325527705|gb|EGD04994.1| threonyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 406

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 31  MIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           + HQ   S G   W P G   L  V   IR    + G  E+  P + +  LW +SG ++ 
Sbjct: 15  LFHQQDESPGAIFWHPRGMVLLRVVEDYIRARMRQAGFSEVRTPQIIARSLWEQSGHWEK 74

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           +G+ M  L   +D+     P        IFR  ++SYR+LP  + +     R E      
Sbjct: 75  FGRGMFSLQS-DDRPYCLKPMSCPCHVQIFRKGVRSYRDLPVRYSEFGAVHRAEPSGALH 133

Query: 148 GVMRSREFLMKDAY 161
           G+MR+R F   DA+
Sbjct: 134 GLMRARAFTQDDAH 147


>gi|330810593|ref|YP_004355055.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378701|gb|AEA70051.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 640

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 9/196 (4%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + S G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEESPGMVFWHPNGWTLYQVLEQYMRQVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      N    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTQSENRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  +          + ++   G   
Sbjct: 356 EFGACHRNEPSGALHGIMRVRAFTQDDAHIF-CTEEQMQAESAAFIKLTMDVYRDFGFTE 414

Query: 193 IPMRAESGP---IGGD 205
           + M+  + P   +G D
Sbjct: 415 VEMKLSTRPEKRVGSD 430


>gi|332830447|gb|EGK03075.1| threonyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 650

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 159/434 (36%), Gaps = 90/434 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +   +++ Q +    ++  P + S  L+V SG Y+ YGK+  + 
Sbjct: 261 KGLPLWLPRGTQLRLKLEDFLKKIQRKFDYQQVMTPHIGSKILYVTSGHYEKYGKDSFQP 320

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I++   +SY++LP    +    +R E      G+ R R
Sbjct: 321 IHTPEEGEEFLLKPMNCPHHCEIYKIIPRSYKDLPLRLAEFGTVYRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE  K  + K+      IF  L  ++   +              I L
Sbjct: 381 GFTQDDAHIF-CTPEQLKAEFLKVMDIVFIIFKALDFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK    LP 
Sbjct: 426 RDPENREKYIGSD-----------------------ENWEKAERAIIEACEEK---GLPA 459

Query: 274 NKRVSARGIEVGHIFYFGTK---------------------YSLP--MSATFKGADGKDH 310
                   +E+G   ++G K                     Y+LP      + GAD + H
Sbjct: 460 K-------VELGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFELEYTGADNQKH 512

Query: 311 Y-VQMGSYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACE 366
             V +     G+M R +A +IE +  GK  +W  PD V    IS        +   D   
Sbjct: 513 RPVMIHRAPFGSMERFIAVLIEHTA-GKFPLWLAPDQVVILPIS--------EKFNDYAH 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ +   + G     DD  E+IG +    +L   P  +IVG K     +V ++ +  G +
Sbjct: 564 RVNSYFKQQGISSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKEAETEEVSVRKQGEGDK 623

Query: 427 EDMSLEEVINYASH 440
             M      N+A+ 
Sbjct: 624 GSMKF---TNFAAQ 634


>gi|219684697|ref|ZP_03539640.1| prolyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219672059|gb|EED29113.1| prolyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 488

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 170/428 (39%), Gaps = 85/428 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKKFKE 58

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           +G      P L     L  E    + +  E   + D   +++    +  PT E ++ +++
Sbjct: 59  SGHENAYFPMLIPYGFLEKEKDHIEGFSPEFAIIKDAGGESLAEPLVLRPTSETIIWNMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              IKSYR+LP    Q     R E R R   +R+ EFL ++ +    T   ++    +  
Sbjct: 119 SKWIKSYRDLPLKINQWANVVRWEKRTR-PFLRTTEFLWQEGH----TAHATEEEALEET 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L ++ R                         + D     VFC K        SE   
Sbjct: 174 LLILDLYKRF------------------------MEDYLAIPVFCGK-------KSEKEK 202

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F   +S  SI                    ++L ++K+     ++     Y G  ++   
Sbjct: 203 FAGAVSTYSI--------------------EALMQDKK----ALQAATSHYLGLNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I K  
Sbjct: 239 DVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPIEIIVIPIFKKE 297

Query: 358 DQVCR---DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D++ +   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  
Sbjct: 298 DEINKKILDYSDCVVNALKKAEFRVEVDKDVRSSPGFRFSSAEFKGIPIRIEVGINDVLL 357

Query: 414 SKVEIKHR 421
           + V I  R
Sbjct: 358 NSVTIVRR 365


>gi|194017903|ref|ZP_03056511.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010369|gb|EDW19943.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 642

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 171/418 (40%), Gaps = 43/418 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP GQ   + + A  RE +N+    E+S P + + +LW +SG +D Y 
Sbjct: 256 MFSEEAPGMPFYLPKGQIVRNELMAFSREVRNKAQYEEVSTPFMMNQELWEKSGHWDHYH 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M   ++ +  +    P +      +F++++ SYR+LP    +     R E      G+
Sbjct: 316 ENMY-FSEVDHTSFALKPMNCPGHMLMFKNNLYSYRDLPIRMAEFGQVHRHEFSGALNGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F L  +  +    ++F     ++   G +    +  R E   +G D 
Sbjct: 375 FRVRTFCQDDAHIF-LREDQIEAEIKRIFQLVDHVYRTFGFEYSVELSTRPEKA-LGDD- 431

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 + D  E+ +   K+ +D        D+     LN   E   A Y    D H   
Sbjct: 432 -----AIWDISESAL---KNVLD----RLKVDY----QLN---EGDGAFYGPKIDFH--- 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           + D+L  + + +   ++    F    K+ L         + K   V + S   G++    
Sbjct: 470 IKDALQRSHQCATIQLD----FQMPEKFDL---TYINEKNEKVRPVVIHSAIFGSLDRFF 522

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++     G   +W   +AP ++ +I +     V  D C ++  +L K+G  V  D+  E
Sbjct: 523 GILIEHFAGAFPLW---LAPVQVQIIPVTT---VHLDHCLEVQQQLRKIGIRVTIDERDE 576

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++G +   A +   P   ++G   + D  + I+       + + +E+  + A  +  N
Sbjct: 577 KLGYKMREAQMQKIPYIAVIGDTEMQDKSLNIRQHGEKASKQLFIEDFKHLAVQQIQN 634


>gi|261408878|ref|YP_003245119.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261285341|gb|ACX67312.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 645

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/412 (20%), Positives = 166/412 (40%), Gaps = 53/412 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  WLP G K    +   I + + R G   +  P L + +L+  SG ++ Y ++M  
Sbjct: 263 GQGLPIWLPNGAKLRRTLERYIVDMEERLGYQHVYTPVLGNVELYKTSGHWEHYQEDMFP 322

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             + +++ ++  P +      +++S + SYR+LP    ++ ++ R E+     G+ R R 
Sbjct: 323 KMEMDNEELVLRPMNCPHHMMVYKSDMHSYRDLPIRIAELGMQHRYEMSGALTGLHRVRA 382

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D++ F   P+  K  + ++    + ++   G+     R         LS+      
Sbjct: 383 MTLNDSHIF-CRPDQIKEEFARVIQLIMTVYKDFGIHDYRFR---------LSYR----- 427

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP----------YAATSDVHN 264
           D  +T+ +   D M + +            L  +VE    P          Y    DV  
Sbjct: 428 DPQDTEKYFQNDEM-WEMSQR--------MLREVVESLDMPFYEAEGEAAFYGPKLDV-- 476

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMR 323
            ++  +L + + +S   ++    F    ++ L     + G DG+ H   +   GI G M 
Sbjct: 477 -QIRTALGKEETLSTVQLD----FLLPERFEL----EYVGDDGQKHRPVVIHRGILGTME 527

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A +  +  G   +W   ++P ++ +I +        D  +++  +L   G  V  D 
Sbjct: 528 RFTAFLLENFAGALPLW---LSPVQVKVIPV---SNAFEDYAKEVAEKLQFAGISVEPDL 581

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E++G +   A L   P   IVG    +   V ++ R  G      L+E+I
Sbjct: 582 RNEKLGYKIREAQLEKIPYMFIVGENEKNAGAVSVRKRGEGDIGAQPLDEII 633


>gi|295696884|ref|YP_003590122.1| threonyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295412486|gb|ADG06978.1| threonyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 641

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 158/407 (38%), Gaps = 49/407 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+   LP G    + +   +RE  N     E+  P L    LW  SG +D Y KE + 
Sbjct: 265 APGMPFLLPKGMVIRNELERFMREFLNEYDYEEVKTPILMDRVLWERSGHWDHY-KENMY 323

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             + +++     P +       F+  ++SYR+LP    +  L  R EL     G++R RE
Sbjct: 324 FTEVDEREFALKPMNCPGHALTFKHRVRSYRDLPIRMAEFGLLHRHELSGALHGLLRVRE 383

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIV 212
           F   DA+ F + P+  +           R++   G    P R E  + P     S E   
Sbjct: 384 FTQDDAHLF-VRPDQIQDEVFACMDLIDRVYAAFGF---PYRVELSTRPENSTGSDELWE 439

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A  G  +   S+  +++ I   +  F                Y    D H   + DSL 
Sbjct: 440 AATEGLRKALESRG-LEYQINEGDGAF----------------YGPKIDFH---VKDSL- 478

Query: 273 ENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
                  R  + G I   F    K+ L    T+ G D + H  V +    +G+      +
Sbjct: 479 ------GRSHQCGTIQLDFQMPEKFDL----TYVGEDNERHRPVMIHRAVLGSFERFFGL 528

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   ++G   +W   +AP +  ++ I A         +++ +R   +G  V  D   E+I
Sbjct: 529 LIEHYNGAFPVW---LAPVQARVLTIGAGHL---PYAKEVQSRARAMGLRVEVDGRAEKI 582

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A +   P  +++G +     +V ++ R  G     S EEV+
Sbjct: 583 GYKVREAQVQKIPYMLVIGDQEAQTGEVSVRKRGQGDLGRRSAEEVL 629


>gi|254511025|ref|ZP_05123092.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221534736|gb|EEE37724.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 652

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 153/426 (35%), Gaps = 64/426 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    +   +R  Q+R G +E++ P +    LW  SG +D Y +
Sbjct: 264 MQEEAPGQIFWHPNGWKIYTTLQDYMRRMQDRDGYVEVNTPQVVDRKLWEASGHWDKYQE 323

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      +F   +KSYR+LP    +     R E    
Sbjct: 324 NMFIVEVDEEHAREKAINALKPMNCPCHVQVFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 383

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    S    F+++L +++  LG     ++  + P   
Sbjct: 384 LHGIMRVRGFTQDDGHIF--CSEDQIESETAKFIAFLSKVYADLGFHDWTIKLSTRPEKR 441

Query: 202 IGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           IG D S + +   L D       C     D+ +      F                    
Sbjct: 442 IGSDESWDIVEKALGDA------CKAAGYDYEVLEGEGAF-------------------- 475

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-----MSATFKGADGKDHY-VQ 313
              +  KL  +L +          +G  +  GT    P     + A F GADG  H    
Sbjct: 476 ---YGPKLEFTLTD---------AIGRDWQCGTLQVDPNLPERLDANFIGADGAKHRPFM 523

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+      ++   H GK   W   +AP ++ + +I +      D   ++   L 
Sbjct: 524 LHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITSE---ADDYVMEVVDTLK 577

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D   E+I  +     +   P+ + VG + V +  V I+       +  SLE 
Sbjct: 578 AAGIRAEADIRNEKINYKVREHSVSKVPVILAVGHREVEERTVTIRRLGEKQTQVQSLET 637

Query: 434 VINYAS 439
           V N  S
Sbjct: 638 VTNELS 643


>gi|221066194|ref|ZP_03542299.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711217|gb|EED66585.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 639

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 143/390 (36%), Gaps = 54/390 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNGYQEVKAPQILDKGLWEKTGHWDKYRE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    D   +     P +      IF+  IKSYR+LP  F +     R+E      G+M
Sbjct: 315 NMF-TTDSEKREYALKPMNCPGHIIIFKQGIKSYRDLPLRFGEFGNCHRNEPTGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDL 206
           R R F   D + F    E    +    F S L +++   G  +I  R  + P   IG D 
Sbjct: 374 RVRAFTQDDGHIF--CTEDQIQAEVTAFTSLLQKVYADFGFTNILYRLSTRPEKRIGTDE 431

Query: 207 SHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSD 261
           + +     LA+ G     C  +++    P E   +   I     +++  +W      T  
Sbjct: 432 AWDKAENALAE-GLRASGCEFEYL----PGEGAFYGPKIEYTLKDALGREWQ---CGTIQ 483

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-G 320
           V       ++PE                        + A F G DG+ H   M    I G
Sbjct: 484 VD-----PNMPER-----------------------LDAEFVGEDGERHRPIMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
           ++     ++   H G    W   +AP + +++NI  A     ++  +K+   L      V
Sbjct: 516 SLERFIGILVEHHSGALPAW---LAPVQAAVLNITDAQADYAQEVAQKLQKALPNQSLRV 572

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             D   E+I  +     +   P  ++ G K
Sbjct: 573 VTDLRNEKITYKIREHSMQKLPYILVAGDK 602


>gi|90021224|ref|YP_527051.1| threonyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123090560|sp|Q21KE0|SYT_SACD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89950824|gb|ABD80839.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Saccharophagus
           degradans 2-40]
          Length = 636

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 152/405 (37%), Gaps = 64/405 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W P G      +   +RE Q   G  E+  P +    LW  SG +D +  
Sbjct: 255 IQEEAPGMVFWHPNGWSIYTAIEEYMREVQRLNGYEEIKTPQVVDRSLWERSGHWDKFRD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M  + ++  D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 NMFTVESESRDYAV--KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGCCHRNEASGTLQGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F+  DA+ F    E        +F   L +++   G + + +R  + P   +G D
Sbjct: 373 MRVRGFVQDDAHIF--CSESMIQDEVSVFTDLLFKVYKDFGFEDVIIRLSTRPEQRVGSD 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP---IPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                  + D  E  +  + D    P   +P E   +   I  +                
Sbjct: 431 ------EVWDKAEKALSDALDAKGLPWQLLPGEGAFYGPKIEFS---------------- 468

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSY 317
               L D L             G ++  GT    +S+P  + A F   DG      M   
Sbjct: 469 ----LKDCL-------------GRVWQCGTIQVDFSMPGRLDAQFVAEDGSRQVPVMLHR 511

Query: 318 GI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            I G+      ++   ++G    W   +AP +  L+NI  +     +  +K+   L   G
Sbjct: 512 AILGSFERFIGILIEEYEGAFPAW---LAPTQAVLLNITDNQA---EYVKKVENSLKNKG 565

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             V  D   E+IG +     +   P  ++VG + V ++ V ++ R
Sbjct: 566 FRVNSDLRNEKIGFKIREHTIQKVPYLLVVGDQEVENNSVAVRGR 610


>gi|313896316|ref|ZP_07829869.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975115|gb|EFR40577.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 639

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 160/424 (37%), Gaps = 51/424 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    + +    RE   R G  E+S P + S  LW  SG +  Y +
Sbjct: 257 LHEEGPGFPFFHPNGMILRNELLNYWREVHRRYGYSEISTPVILSRKLWETSGHWFHYRE 316

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      ++RS + SYR+LP    ++ L  R EL     G+
Sbjct: 317 NMYTTQIDEEDYAI--KPMNCPGCMLVYRSQLHSYRDLPLRLAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F   DA+ F +TPE  +         +  ++   GL S      + P     S E
Sbjct: 375 FRVRNFTQDDAHLF-VTPEQIEGEIQHTIDLFDEVYRTFGL-SYKAELSTRPDDSMGSDE 432

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              LA +G  +              EN   D I++     E   A Y    D H   L D
Sbjct: 433 MWELATSGLQKAL------------ENRGLDYIVN-----EGDGAFYGPKIDFH---LRD 472

Query: 270 SLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
           S             +G  +  GT     SLP     T+ G DG+ H  V +     G++ 
Sbjct: 473 S-------------IGRTWQCGTIQLDMSLPEKFDLTYVGEDGEKHRPVMLHRVVYGSIE 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++  +  G   +W   + P ++ ++ I        +  E++  R+   G  V  D+
Sbjct: 520 RFIGILIENFAGAFPVW---MTPVQVRILPITERHA---EYAEELRKRMFDRGIRVEVDN 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +   + +   P  ++VG +      V ++         MS ++ I +   + +
Sbjct: 574 RNEKTGYKIRESQVKKTPYTLVVGDQEQESGTVALRKYGEKDSTVMSADDFIAFVEKKIA 633

Query: 444 NNRP 447
              P
Sbjct: 634 ERSP 637


>gi|169335721|ref|ZP_02862914.1| hypothetical protein ANASTE_02141 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258459|gb|EDS72425.1| hypothetical protein ANASTE_02141 [Anaerofustis stercorihominis DSM
           17244]
          Length = 478

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/424 (19%), Positives = 166/424 (39%), Gaps = 80/424 (18%)

Query: 25  LMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVE 82
           ++ +T M+ +   KG     P G    +N+ A   +    TG   M  P L   + L  E
Sbjct: 24  VITKTEMVDYAPVKGFMVIRPYGYALWENIQAAFDKRFKETGHQNMYFPLLIPESFLNKE 83

Query: 83  SGRYDSYGKEML--------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
               + +  E+          LA+R    +   PT E ++  ++   +KSYR LPF + Q
Sbjct: 84  KEHVEGFAPEVAWVTHGGENELAER----LCIRPTSETIICSMYAKWLKSYRQLPFLYNQ 139

Query: 135 IQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
               +++    RP    +R+ EFL ++ ++   T E ++    +M   Y  I        
Sbjct: 140 WANVVRWEKTTRP---FLRTSEFLWQEGHTVHATFEEAQEETLQMIDIYREI-------- 188

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                                           +D++  P+         ++   S  E++
Sbjct: 189 -------------------------------CEDYLAMPV---------VVGQKSEKEKF 208

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              +A  +        ++L  + +    G       +F   + +     F   + K+ Y 
Sbjct: 209 AGAHATYT-------IEALMHDGQALQSGTSHNLADHFAKAFGI----KFLNKEEKEQYA 257

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              S+G+ + R++  +I    D  G+++P  +AP ++ +I I  H +   D   ++  +L
Sbjct: 258 YSTSWGV-STRLIGGIIMVHGDDYGLVFPPKIAPTQVVIIPIAQHKEGVLDKANELKNKL 316

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           S +   +  D+     G +F   ++ G P+++ +G K + + +  I  R T  +  +SL+
Sbjct: 317 SDLRV-LLDDNEAYSPGWKFNQWEMKGVPVRIEIGPKDIENGQCVIARRDTSEKISVSLD 375

Query: 433 EVIN 436
           EV N
Sbjct: 376 EVEN 379


>gi|253565674|ref|ZP_04843129.1| prolyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|251945953|gb|EES86360.1| prolyl-tRNA synthetase [Bacteroides sp. 3_2_5]
          Length = 497

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 89/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L ++G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKLIDAKVEGIVAKLKQLGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYVQN 400



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYS 162
            ++ ++
Sbjct: 173 WQEGHT 178


>gi|114559271|ref|XP_001168925.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 8 [Pan
           troglodytes]
          Length = 701

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 164/418 (39%), Gaps = 57/418 (13%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 296 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 355

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L S  LW +SG ++ Y ++M  +    D  +   P +      +F    +S+R LP    
Sbjct: 356 LFSTKLWEQSGHWEHYQEDMFAVQHITD-TLALKPMNCPAHCLMFAHRPRSWRELPLRLA 414

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSKHSYNKMFVSYLRIFHR 187
                 R E      G+ R R F   DA+ F  T +      S   + +   + L    R
Sbjct: 415 DFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSCLDFLRSVYAVLGFSFR 474

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L L + P    SG +G                   C  D  +  +     +F +   LNS
Sbjct: 475 LALSTRP----SGFLGDP-----------------CLWDQAEQVLKQALKEFGEPWDLNS 513

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGA 305
                 A Y    DVH   L D+L        R  + G I      + LP+     +KG 
Sbjct: 514 GD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---QLDFQLPLRFDLQYKGQ 557

Query: 306 DGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRD 363
            G  +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I + +  ++  ++
Sbjct: 558 AGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQVVVIPVGSEQEEYAKE 614

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           A + + A       D    D G  +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 615 AQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVGQKEQSKRTVNIRTR 669


>gi|161763540|ref|YP_081979.2| prolyl-tRNA synthetase [Bacillus cereus E33L]
 gi|114152167|sp|Q63GI2|SYP2_BACCZ RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
          Length = 476

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHGDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|238021043|ref|ZP_04601469.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
 gi|237868023|gb|EEP69029.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
          Length = 637

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 156/400 (39%), Gaps = 54/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R E    G  E+  P +     W +SG + +Y  
Sbjct: 258 LQDEAPGMVFWHPRGWTLWQVIEQHMRRELTAAGYQEVKTPQIMDKTFWEKSGHWANYKD 317

Query: 92  EM-LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M L  +++ D A+  +  P H      IF   ++SY +LP    +     R+E      
Sbjct: 318 NMFLTSSEKRDYAVKPMNCPGH----VQIFNHGLRSYNDLPMRLAEFGSCHRNEPSGALH 373

Query: 148 GVMRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           G+MR R F+  DA+ F   D   E ++ ++N++    ++I+ + G   + ++    P   
Sbjct: 374 GLMRVRGFVQDDAHIFCTEDQIAEETR-AFNQLV---MKIYRQFGFHDVSIKLSLRPEKR 429

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S E    A+ G      +       +P E                  A Y    + H 
Sbjct: 430 AGSDEIWDKAEQGLRDALTACGVTWQELPGEG-----------------AFYGPKVEYH- 471

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             + D+L        R  + G I      + LP  + A +   D  +   V +    +G+
Sbjct: 472 --IKDAL-------GRSWQCGTI---QLDFVLPERLDAEYVTRDNNRARPVMLHRAILGS 519

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +     ++   H G   +W   +AP ++ ++NI        D C ++ A+L   G     
Sbjct: 520 LERFIGILIEQHAGSFPLW---LAPVQMVVMNITEKQA---DYCREVVAKLQAAGFRAEL 573

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E+IG +        +P Q++VG K + + +V ++ +
Sbjct: 574 DLRNEKIGYKIRDNSSQRYPYQIVVGDKEMENGQVAVRKK 613


>gi|58197411|dbj|BAD88636.1| hypothetical protein [Streptococcus suis]
          Length = 119

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 1/102 (0%)

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           + +G   P  +APF + LI +   D+   +  + I A L   G +V  DD  E++G +F+
Sbjct: 8   ESRGSTSPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRNERVGVKFS 67

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +DL+G P++V VG K  +D  VE+K + TG   ++ +++++
Sbjct: 68  DSDLIGLPIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLL 108


>gi|329927796|ref|ZP_08281857.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938197|gb|EGG34592.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 636

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 160/411 (38%), Gaps = 45/411 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G    + +    R  Q      E+  P + +  LW  SG +D Y 
Sbjct: 255 MFSEEAPGMPFFLPNGMIIRNELEQFARGLQFHRDYDEVRTPLMMNKRLWEMSGHWDHY- 313

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           K+ +     ++      P +      ++++ + SYR LP    +     R E      G+
Sbjct: 314 KDNMYFTQVDETEYALKPMNCPGHMLVYKNSLHSYRELPIRISEFGQVHRHEFSGALNGM 373

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F + P+  +    ++     +++   G +   +   + P     S E
Sbjct: 374 MRVRTFCQDDAHIF-VRPDQIQEEIKQVIDFISQVYQVFGFEYT-IELSTRPEDSMGSEE 431

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A++   QV    D M  P                I E   A Y    D H   + D
Sbjct: 432 LWEQAESSLQQVL---DQMGLPY--------------RINEGDGAFYGPKIDFH---ILD 471

Query: 270 SLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           SL        R  + G I   F F  K+ L    ++ G D + H  V +     G++   
Sbjct: 472 SL-------KRSWQCGTIQLDFQFPEKFDL----SYIGEDNQKHRPVVIHRAVFGSIERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP ++ +I +  H     D   K+  RL   G  V  D   
Sbjct: 521 IGILTEHYGGAFPMW---LAPVQVMIIPVSDH---YIDYSLKVKKRLENAGIRVNVDVRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E++G +   A LL  P  +++G K +    V ++ R  G   ++++++VI 
Sbjct: 575 EKLGYKIREAGLLKTPYTLVLGEKEMDSDHVSVRKRGEGELGEIAIDQVIE 625


>gi|169347105|ref|ZP_02866047.1| threonyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169296788|gb|EDS78917.1| threonyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 643

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 159/409 (38%), Gaps = 44/409 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G + +  +   I +E+ R G +    P +  +DL+  SG +D Y   M  L
Sbjct: 259 QGLPLLMPKGARIIQTLQRWIEDEEQRRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D    + ++   P        I+ S   SYR+LP  F +    FR+E      G++R R
Sbjct: 319 GDEEKDSEVFALRPMTCPFQYAIYNSTQHSYRDLPVRFAETSTLFRNESSGEMHGLIRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F + D +    TPE  +  +         +   LG            I  D+++ F   
Sbjct: 379 QFTLADGHIV-CTPEQLEDEFKNTVDLVKYVMETLG------------IADDITYRFSKW 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTD--FDDIISLNSI----VEQWTAPYAATSDVHNEKL 267
            D   T+      +++ P   ENT     +I++  +I     +   A Y    D+  + +
Sbjct: 426 -DPNNTE-----KYINDPEAWENTQNIMREILNHLNIDFTEADDEAAFYGPKLDIQFKNV 479

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K  +   I++     F       M    K  + K  Y+   S  IG      A
Sbjct: 480 -----HGKEDTIITIQID----FALAERFGMYYIDKDGEKKRPYIIHRS-SIGCYERTLA 529

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    W   +AP +  ++ +   D+   D   ++   L + G  V  D   E+
Sbjct: 530 MLIEKYAGALPTW---IAPVQAKVLPLS--DKYA-DYANEVVEELRRRGVRVEADHRAEK 583

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +   A L   P  ++VG K   + +V ++ R  G    M L + +N
Sbjct: 584 IGYKIREARLERTPYILVVGEKEAENKEVSVRSRKNGEEGAMPLADFVN 632


>gi|224539709|ref|ZP_03680248.1| hypothetical protein BACCELL_04618 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518677|gb|EEF87782.1| hypothetical protein BACCELL_04618 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 520

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 259 GKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-STRLMGALIMTHSDDNGL 317

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  + ++ +   EK   I A+L  +G  V +D+   ++ G +FA 
Sbjct: 318 VLPPHLAPIQVVIVPIYKNAEMLQKINEKVAGIVAKLKSMGISVKYDNADNKRPGFKFAD 377

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E +S + +  Y  +
Sbjct: 378 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETLSCDGIEEYVKN 423



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 141 EEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFLWQEG 199

Query: 161 YSFDLT 166
           ++   T
Sbjct: 200 HTAHAT 205


>gi|323693976|ref|ZP_08108161.1| prolyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323501976|gb|EGB17853.1| prolyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 477

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 133/333 (39%), Gaps = 67/333 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAY 161
           M   PT E +  D +   I+SYR+LP  + Q    +++    RP    +RSREFL ++ +
Sbjct: 110 MCVRPTSETLFCDFYARDIQSYRDLPRLYNQWCSVVRWEKTTRP---FLRSREFLWQEGH 166

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   T E ++     M   Y                                AD      
Sbjct: 167 TAHATAEQAEERTELMLNLY--------------------------------AD------ 188

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           FC +      +  + TD +             A Y   + +H+ K   S           
Sbjct: 189 FCEEVLAMPVVRGKKTDKEKFAGAE-------ATYTIEALMHDGKALQS----------- 230

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
              G    FG  ++      +   D +  YV   S+G+   R++ A+I    D  G++ P
Sbjct: 231 ---GTSHNFGDGFAKAFEIQYLDKDNQLKYVHQTSWGM-TTRLIGAIIMVHGDDNGLVLP 286

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++ ++ I+ + +   D   ++   LS  G  V  DD  +  G +F+ +++ G P
Sbjct: 287 PRIAPVQVMIVPIQQNKEGVLDKAYELKEVLS--GFKVKVDDSDKSPGWKFSESEMRGIP 344

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++V +G + +++++  +  R T  +  +SL+E+
Sbjct: 345 VRVEIGPRDLAENQAVLVRRDTHEKITVSLDEI 377


>gi|58617659|ref|YP_196858.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|73919787|sp|Q5FGP1|SYT_EHRRG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58417271|emb|CAI28384.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 633

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 159/401 (39%), Gaps = 62/401 (15%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G I  H KG+  +     + ++N    IR++    G IE+  P L S  LW +SG +D +
Sbjct: 261 GQIFWHEKGLIIY-----RIIENY---IRKKLENNGYIEVKTPYLLSKTLWEQSGHWDKF 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M  L++ ++K +   P +      IF S I+SY++LP    +     R E      G
Sbjct: 313 REHMF-LSEIDNKVVAIKPMNCPCHVQIFNSKIRSYKDLPLRMAEFGTCHRYEASGALHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F   DA+ F  T +       K     + ++   G K I ++    P    G D
Sbjct: 372 LMRVRSFTQDDAHIF-CTEDQIIEEALKFCNLLMEVYEVFGFKDILVKFSDRPEKRAGSD 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  + D  E  +  S       + + N        LN ++      +      +  
Sbjct: 431 ------KIWDKAEEALKAS-------VKAAN--------LNYVLNPGDGAF------YGP 463

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI- 319
           KL  +L +          +G  +  GT    + LP  + A + G+DGK H+  M    I 
Sbjct: 464 KLEFTLKD---------AIGREWQCGTLQMDFVLPERLGAYYTGSDGKKHHPIMLHRAIL 514

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G +     ++   H GK  IW   +AP ++S++ I   D +      K  A    +  +V
Sbjct: 515 GTIERFIGILIEHHSGKLPIW---LAPVQLSILTI-TEDAIDYAISLKHKAMKQNIRAEV 570

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   E+I  +         P+  I+G K +    V I++
Sbjct: 571 --DITNEKINYKIRSHISKKIPVLWIIGKKEIETESVSIRY 609


>gi|15921730|ref|NP_377399.1| prolyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|74581041|sp|Q971B5|SYP_SULTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15622517|dbj|BAB66508.1| 483aa long hypothetical prolyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 483

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++  + RV    +++G + + G  ++       +  DG   Y    SYGI   RV+A 
Sbjct: 215 FDTILPDSRV----LQIGTVHHLGQHFTKAFDFKIQRKDGSLDYPHQTSYGISD-RVIAV 269

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWDD 383
           +I  + D  G +    +AP K+ ++ I A D+       +  +++   L   G  V  DD
Sbjct: 270 LIAINGDDHGPVLNPVIAPIKVVIVPIPAKDEETTAKIINYAKEVGENLKNRGITVVIDD 329

Query: 384 MGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEV 434
             E+  G +F + +L G PL++ +G K ++++ V IK R T     + +D ++EEV
Sbjct: 330 DKEKTPGEKFYIWELKGVPLRIEIGPKELNNNTVYIKRRDTFEGKSVPKDKAVEEV 385


>gi|152996743|ref|YP_001341578.1| tRNA synthetase class II (G H P and S) [Marinomonas sp. MWYL1]
 gi|150837667|gb|ABR71643.1| tRNA synthetase class II (G H P and S) [Marinomonas sp. MWYL1]
          Length = 395

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 159/399 (39%), Gaps = 58/399 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q + G+  W P G     N+   +R    + G  E+  P L   +LW  SG  D Y ++M
Sbjct: 18  QQAPGMLFWHPNGWHLFQNIQEHMRRCYRQYGFKEVRTPQLMKKELWHISGHMDMYAQDM 77

Query: 94  LRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
               ++N D+     P        +++  + SYR+LP   ++  L  R+E      G +R
Sbjct: 78  FFGGEQNGDQEYALKPMSCPAHILMYKRGVHSYRDLPLKLFEFGLVHRNESSGSLNGCLR 137

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R+F   DA+ F    +  K    +      +I++  G +++ ++  + P   +G D S 
Sbjct: 138 LRQFTQDDAHVFCAWSQ-VKQEVGQFLQRAKQIYNDYGYQALEVKISTQPEKALGDDASW 196

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                          ++D +     +EN  FD  +   +        Y    ++    L 
Sbjct: 197 RR-------------AEDILKEACQAENVPFDIQVGEGAF-------YGPKIEL---ALQ 233

Query: 269 DSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY---VQMGSYGIG 320
           D+             VG I+  GT    ++LP      F    GK      +    YG  
Sbjct: 234 DA-------------VGRIWQCGTIQLDFNLPDRFELEFDNEQGKAEQPIILHQAVYG-S 279

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +  ++E S   +G++ P+ + P  ++L+++  +D V  D   ++ A L + G +V 
Sbjct: 280 IERWIGILLEVS---QGVL-PEWIHPQPVALVSV--NDSVL-DYANQLRAELEQQGINVS 332

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            +     +G +   +  L  P  +I+G +     K+ I+
Sbjct: 333 CEFGDHSVGRKIKRSFELKIPNIIIIGEQEAQAGKLTIR 371


>gi|238898885|ref|YP_002924567.1| threonine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259516538|sp|C4K776|SYT_HAMD5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229466645|gb|ACQ68419.1| threonine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 638

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 148/391 (37%), Gaps = 42/391 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +  +IRE+       E+  P +    LW ++G +++Y + 
Sbjct: 257 QEEAPGMVFWHENGWIVFRELEILIREKLKEYEYQEVKGPFMMDRVLWEKTGHWENYSEN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N +  I  P +     +IF+  +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTLSENREYCI-KPMNCPGHLEIFKQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F    +  K   N + ++Y  I+   G K I ++  + P     S E  
Sbjct: 376 VRGFTQDDAHIFCTEKQVRKEVSNCIKMTY-DIYQTFGFKKIAVKLSTRPEKRIGSDEIW 434

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+     V   +       P E   +   I                       L+D L
Sbjct: 435 TQAEEDLASVLKEQGITFELQPGEGAFYGPKIEFT--------------------LYDCL 474

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAV 328
                   R  + G +      +SLP  ++A +   + +     M    I G++     +
Sbjct: 475 D-------RAWQCGTV---QLDFSLPVRLNAFYIDENSERQVPVMIHRAILGSIERFIGI 524

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   +AP ++ LINI        D  +K+   L ++G     D   E+I
Sbjct: 525 LTEEYAGFFPVW---LAPVQVMLINITEKQS---DYVKKVAKNLQQLGVRAKVDLRNEKI 578

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           G +     L   P  ++ G K V  +++ ++
Sbjct: 579 GFKIRQHTLYRIPYILVCGDKEVESNQIAVR 609


>gi|118415374|gb|ABK83793.1| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
          Length = 502

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   T    + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKATSHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 122 VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 178

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 179 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 212

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 213 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 249 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 298 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 356

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 357 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 402


>gi|299533556|ref|ZP_07046932.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298718462|gb|EFI59443.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 639

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 143/390 (36%), Gaps = 54/390 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNGYQEVKAPQILDKGLWEKTGHWDKYRE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    D   +     P +      IF+  IKSYR+LP  F +     R+E      G+M
Sbjct: 315 NMF-TTDSEKREYALKPMNCPGHIIIFKQGIKSYRDLPLRFGEFGNCHRNEPTGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDL 206
           R R F   D + F    E    +    F S L +++   G  +I  R  + P   IG D 
Sbjct: 374 RVRAFTQDDGHIF--CTEDQIQAEVTAFTSLLQKVYADFGFTNILYRLSTRPEKRIGTDE 431

Query: 207 SHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSD 261
           + +     LA+ G     C  +++    P E   +   I     +++  +W      T  
Sbjct: 432 AWDKAENALAE-GLRASGCEFEYL----PGEGAFYGPKIEYTLKDALGREWQ---CGTIQ 483

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-G 320
           V       ++PE                        + A F G DG+ H   M    I G
Sbjct: 484 VD-----PNMPER-----------------------LDAEFVGEDGERHRPIMLHRAILG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
           ++     ++   H G    W   +AP + +++NI  A     ++  +K+   L      V
Sbjct: 516 SLERFIGILVEHHSGALPAW---LAPVQAAVLNITDAQADYAQEVAQKLQKALPNQSLRV 572

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             D   E+I  +     +   P  ++ G K
Sbjct: 573 VTDLRNEKITYKIREHSMQKLPYILVAGDK 602


>gi|162382786|ref|YP_893300.2| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|225862437|ref|YP_002747815.1| prolyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|229182781|ref|ZP_04310021.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
 gi|152074740|sp|A0R9A0|SYP2_BACAH RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|225785886|gb|ACO26103.1| proline--tRNA ligase [Bacillus cereus 03BB102]
 gi|228600754|gb|EEK58334.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
          Length = 476

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   T    + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATSHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|332220153|ref|XP_003259222.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 1
           [Nomascus leucogenys]
          Length = 718

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 167/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E  R G  E+  PT
Sbjct: 296 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPT 355

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 356 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 415

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 416 FAHRPRSWRELPLRLADFGALHRAEASGSLRGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 475

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G                   C  D  +  
Sbjct: 476 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP-----------------CLWDQAEQV 514

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +     +F +   LNS      A Y    DVH   L D+L        R  + G I    
Sbjct: 515 LKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 558

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G  +  V +    +G+M  +  V+  S  GK   WP  ++PF+
Sbjct: 559 LDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSMERLLGVLAESCGGK---WPLWLSPFQ 615

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I +    ++  R+A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 616 VVVIPVGTEQEEYAREAQQSLQAAGLVSDLDA---DSGLTLSRRIRQAQLAHYNFQFVVG 672

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 673 QKEQSKRTVNIRTR 686


>gi|289578715|ref|YP_003477342.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528428|gb|ADD02780.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 635

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 160/414 (38%), Gaps = 52/414 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 254 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHGYQEIKTPIILNEELWRRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S + SYR+LP    ++ L  R EL     G+M
Sbjct: 313 ENMYFTEIDGETYAIKPMNCPGAMLVYKSTMHSYRDLPLRLCELGLVHRHELSGVLHGLM 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TPE  +     +   V Y  +IF       +  R E+  +G D  
Sbjct: 373 RVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYFYKIFGFEYFVELSTRPENS-MGSDED 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A      +  + + ++ P      D               A Y    D H   L
Sbjct: 431 WELATNA------LISALNRVNLPYKVNEGD--------------GAFYGPKIDFH---L 467

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G DG+ H  + +     G++ 
Sbjct: 468 KDSI-------GRTWQCGTIQLDFQMPERFEL----EYIGPDGEKHRPIMLHRVIYGSIE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP ++ ++ I           + +Y RL +       DD
Sbjct: 517 RFIGILTEHFAGA---FPTWLAPVQVRVLPISDKHYAY---AQNVYGRLLENDIRAELDD 570

Query: 384 MGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E+IG +   A L    P  +IVG K V    V ++ R  G    +SL E I 
Sbjct: 571 RNEKIGYKIREAQLQKKIPYMLIVGDKEVEQGTVSLRSRKEGDLGAISLSEFIE 624


>gi|161349985|ref|NP_279476.2| prolyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169235366|ref|YP_001688566.1| prolyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|114152200|sp|Q9HS52|SYP_HALSA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511601|sp|B0R3A3|SYP_HALS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167726432|emb|CAP13217.1| proline--tRNA ligase [Halobacterium salinarum R1]
          Length = 501

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 131/350 (37%), Gaps = 78/350 (22%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           WV  G +D   +   RLA R        PT E ++       ++S+R+LP    Q     
Sbjct: 97  WVTQGGHDDLDQ---RLAVR--------PTSESIIAPYLSQWVRSHRDLPLRVNQWNSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E        R++EFL ++ ++   T E +          Y R++    +  IP+    
Sbjct: 146 RWEATETKPFFRTKEFLWQEGHTAHATDEAAWAETTLRLDQYHRLYE--DVLGIPVLRGR 203

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P      H+    ADT                          +S+ ++           
Sbjct: 204 KP-----DHDKFPGADT-------------------------TMSVEAL----------- 222

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      +P+ K V       G   + G  ++     TF   D  +      S+G+
Sbjct: 223 -----------MPDGKSVQG-----GTSHHLGQSFADAFDITFADEDEAERTAYTTSWGL 266

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKV 375
            + R + A++ S  D +G++ P +VAP ++ ++ I   D   +D  E+    I A L   
Sbjct: 267 -SWRAIGALVMSHSDDQGLVLPPTVAPKQVVIVPIWQED--TKDDVEQYGAEIAAELEAQ 323

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G  V +DD  G   G +F   +L G P++  +G   V D +V + HR  G
Sbjct: 324 GVRVHFDDRDGRNPGFKFNEWELNGVPVRFEIGPNEVEDDEVTVVHRPDG 373


>gi|194334392|ref|YP_002016252.1| prolyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|259511613|sp|B4S9D5|SYP_PROA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194312210|gb|ACF46605.1| prolyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 481

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 137/339 (40%), Gaps = 75/339 (22%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATS 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++    +M ++  + F                                      ++++
Sbjct: 167 TEAQEEVMRM-INVYKTF--------------------------------------AEEY 187

Query: 228 MDFPI----PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           M  P+     +E+  F         VE W                +++ ++K+     ++
Sbjct: 188 MALPVIMGRKTESEKF------AGAVETWC--------------IEAMMQDKK----ALQ 223

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G     G  ++      F+  +G   YV   S+G+ + R++ A+I +  D +G++ P  
Sbjct: 224 AGTSHNLGQNFAKAFDCRFQSKEGALEYVWATSWGV-STRLIGALIMAHSDDRGLVLPPK 282

Query: 344 VAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
           +A  ++ +I I   D     +    I A L++ G   F DD  +   G +FA  +L G P
Sbjct: 283 LATRQVVIIPILKGDISAVIEKARSIAAELNQKGIAAFVDDSDQNSPGWKFAEYELQGIP 342

Query: 402 LQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVIN 436
           +++ +G + +  S      R TG    ++ D SL + IN
Sbjct: 343 VRLELGPRDIQSSTCIAARRDTGEKSKLQLDSSLADQIN 381


>gi|238063301|ref|ZP_04608010.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885112|gb|EEP73940.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 468

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 138/334 (41%), Gaps = 62/334 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E V+ +     I SYR+LP    Q     R ELRPR   +R+ EFL ++ ++ 
Sbjct: 104 VVVRPTSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQEGHTA 162

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             T   ++ +Y +      RI H                    ++E +++          
Sbjct: 163 HATSSDAR-AYAR------RILHE-------------------AYEDLMV---------- 186

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
             + +  P+         ++ L ++ E++     AT+    E +            + ++
Sbjct: 187 --NVLGIPV---------VVGLKTVRERFAG---ATATYTCEGMMGD--------GKALQ 224

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +G     G  ++     ++  A+G   +    S+G  + R++  +I +  D  G+  P  
Sbjct: 225 LGTSHELGQNFAKAFDISYSSAEGGREHAWTTSWGT-STRMLGGLIMAHGDDNGLRVPPR 283

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV-ADLLGFPL 402
           +AP +  ++ +KA D V  +A  K+   L   G  V  DD  +    + AV A+L G+P+
Sbjct: 284 LAPVQAYVMVVKAGDGVG-EAAAKLCDALRDAGVRVALDDRTDTPFGRRAVDAELRGYPV 342

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V VG + ++     +  R  G +    + +V+ 
Sbjct: 343 RVEVGPRDLAAGNAVVVRRTDGSKSPTPVADVVG 376


>gi|153855829|ref|ZP_01996815.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
 gi|149751870|gb|EDM61801.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
          Length = 645

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 87/420 (20%), Positives = 162/420 (38%), Gaps = 47/420 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +   G   +LP G    + +    RE   + G +E+S P + S  LW  SG +D Y 
Sbjct: 256 MMCEEGPGFPFFLPKGMVLKNTLLDYWRELHKKAGYVEVSTPIILSRHLWETSGHWDHY- 314

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     + +     P +      ++++  +SY++LP    ++ L  R E   +  G+
Sbjct: 315 KENMYTTQIDGEDFAIKPMNCPGGMLVYKAEPRSYKDLPLRVGELGLVHRHEKSGQLHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           MR R F   DA+ F + PE  +     +      ++   G K    +  R E   +G D 
Sbjct: 375 MRVRCFTQDDAHIF-MMPEQIRDEIKGVVALIDEVYQLFGFKYHVELSTRPEDS-MGSDE 432

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E       G          +D+ +   +  F                Y    D H   
Sbjct: 433 DWELATEGLRGALNDLG----LDYVVNEGDGAF----------------YGPKIDFH--- 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RV 324
           L DS+    +     +++     F  +Y+        GADG+ H  + +     G++ R 
Sbjct: 470 LTDSIGRTWQCGTIQLDMQLPQRFELEYT--------GADGEKHRPIMIHRVAFGSIERF 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +IE         +P  +AP ++ ++ I        +  +K+   L+  G     D  
Sbjct: 522 IGILIEHFAGA----FPTWLAPVQVKVLPISDKH---LEYGQKVLDTLNAAGIRAEIDTR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +   A +   P  ++VG+K   ++ V ++ R  G     SL+E +   +   + 
Sbjct: 575 AEKIGYKIREAQMQKIPYMLVVGAKEEEENLVSVRSRFAGDEGQKSLDEFVASVTEEIAT 634


>gi|110802298|ref|YP_699583.1| threonyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123047184|sp|Q0SQM4|SYT_CLOPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110682799|gb|ABG86169.1| threonine--tRNA ligase [Clostridium perfringens SM101]
          Length = 643

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 159/409 (38%), Gaps = 44/409 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G + +  +   I +E+ R G +    P +  +DL+  SG +D Y   M  L
Sbjct: 259 QGLPLLMPKGARIIQTLQRWIEDEEQRRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D    + ++   P        I+ S   SYR+LP  F +    FR+E      G++R R
Sbjct: 319 GDEEKDSEVFALRPMTCPFQYAIYNSTQHSYRDLPVRFAETSTLFRNESSGEMHGLIRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F + D +    TPE  +  +         +   LG            I  D+++ F   
Sbjct: 379 QFTLADGHIV-CTPEQLEDEFKNTVDLVKYVMETLG------------IADDITYRFSKW 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTD--FDDIISLNSI----VEQWTAPYAATSDVHNEKL 267
            D   T+      +++ P   ENT     +I++  +I     +   A Y    D+  + +
Sbjct: 426 -DPNNTE-----KYINDPEAWENTQNIMREILNHLNIDFTEADDEAAFYGPKLDIQFKNV 479

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K  +   I++     F       M    K  + K  Y+   S  IG      A
Sbjct: 480 -----HGKEDTIITIQID----FALAERFGMYYIDKDGEKKRPYIIHRS-SIGCYERTLA 529

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    W   +AP +  ++ +   D+   D   ++   L + G  V  D   E+
Sbjct: 530 MLIEKYAGALPTW---IAPVQAKVLPLS--DKYA-DYANEVVEELRRRGVRVEADHRAEK 583

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +   A L   P  ++VG K   + +V ++ R  G    M L + +N
Sbjct: 584 IGYKIREARLERTPYILVVGEKEAENKEVSVRSRKNGEEGAMPLADFVN 632


>gi|296187094|ref|ZP_06855492.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048288|gb|EFG87724.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 560

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 174/438 (39%), Gaps = 54/438 (12%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE  +   
Sbjct: 153 YLNMLEEAKKRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMIIRNTLQNFWREMHSAAD 210

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y KE +     +++     P +      ++++ I SY
Sbjct: 211 YDEIMTPVILNEKLWRQSGHWDHY-KENMYFTKIDNEDYAIKPMNCPGSILVYKNTIHSY 269

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN--KMFVSYL 182
           R LP  + ++ L  R E      G+MR R F   DA+ F      +    N  K+   + 
Sbjct: 270 RELPLRYAEMGLAHRHEKSGALHGLMRVRCFTQDDAHMFLAKDNITDEIVNVIKLIDDFY 329

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++F       +  R E   +G D   E    A  G  +                    D 
Sbjct: 330 KVFGFEYFVELSTRPEDS-MGSDEDWE---AATNGLRKAL------------------DT 367

Query: 243 ISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
           I L   V +   A Y    D H   L D +        R  + G +   F    ++ L  
Sbjct: 368 IGLKYKVNEGDGAFYGPKIDFH---LRDCI-------GRTWQCGTVQLDFQMPERFDL-- 415

Query: 299 SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ GADG+ H  V +     G++     ++   + G    +P  +AP ++ ++NI   
Sbjct: 416 --TYIGADGEKHRPVMVHRVVFGSVERFIGILIEHYAGA---FPAWLAPVQVKIMNI-TD 469

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           DQ+  D   K+   L K    V  D   E+IG +   A L   P  +++G K + ++ V 
Sbjct: 470 DQI--DYANKVAKELKKNKIRVEVDLRNEKIGYKIREAQLQKVPYMLVLGDKEMKENTVA 527

Query: 418 IKHRLTGIREDMSLEEVI 435
           ++ R  G    M+L++ +
Sbjct: 528 VRSRKLGDLGAMALDQFV 545


>gi|269123175|ref|YP_003305752.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314501|gb|ACZ00875.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 633

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 179/421 (42%), Gaps = 67/421 (15%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    I +H  G   ++P G +  + +  + R E N+ G  E+  P 
Sbjct: 235 EAEKRDHRKLGKQLNLFFIDEHGPGFPFFMPKGMRLFNRLQQLWRIEHNKQGYDEIRTPI 294

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +   +LW  SG + +Y +E + +++ ++K     P +       +++++ SY++LP  + 
Sbjct: 295 MLDKELWEISGHWFNY-RENMYVSEIDEKVYAIKPMNCPGSIIAYKNNLHSYKDLPLKYA 353

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--- 189
           ++    R E      G+MR R F   DA+ F  TP+  K S  ++   Y + +   G   
Sbjct: 354 EMGHVHRHEFSGALHGLMRVRAFTQDDAHVF-CTPDQIKDSIKEIVNLYDKYYKLFGFDF 412

Query: 190 ---LKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISL 245
              L + P +A                   G+ +V+  S+  ++  +   N D+      
Sbjct: 413 HVELSTKPEKA------------------VGDAKVWEISERALEETLKELNIDY------ 448

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
             I     A Y    D    K+ DS             +G I+  GT     +LP   + 
Sbjct: 449 -RINAGDGAFYGPKIDF---KMKDS-------------IGRIWQTGTIQLDMNLPKRFNM 491

Query: 301 TFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ G DG+ H   M    + G++     ++   + G   +W   +AP ++ ++ I A +Q
Sbjct: 492 SYIGKDGEKHETVMIHRAMFGSLERFIGILIEHYAGAFPVW---LAPTQVKIMTISA-EQ 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
           V  +   K++ +L  +G     D   E+IG +   A+     P+Q+++G   V ++ V +
Sbjct: 548 V--EYATKLHKKLIDLGIYSELDIRDEKIGYKIREANGEQKIPVQLVIGKNEVLENTVNV 605

Query: 419 K 419
           +
Sbjct: 606 R 606


>gi|257091083|ref|ZP_05585444.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|256999895|gb|EEU86415.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
          Length = 645

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 159/389 (40%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++ R G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEIRLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVR 617


>gi|194467309|ref|ZP_03073296.1| threonyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194454345|gb|EDX43242.1| threonyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 601

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 163/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + +   G   +  P L + D +  SG ++ Y  +M    
Sbjct: 217 GLPYWLPKGATIRRTIERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWEHYRDDMFPPM 276

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 277 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRDLPLRIAELGMMHRYEKSGALSGLQRVREM 336

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +T +  +  + K+    + ++    +     R              + L D
Sbjct: 337 TLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDFDITDYSFR--------------LSLRD 381

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
               + + + D M     S      D ++L+    E   A Y    D+  +    +L  +
Sbjct: 382 PKNVKKYYANDEMWEKSQSMLKSAMDDLNLDYYEAEGEAAFYGPKLDIQTKT---ALGND 438

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ G DGK+H   M   G +G M    A +   +
Sbjct: 439 ETMSTIQLD----FMLPERFGL----SYVGQDGKEHQPVMIHRGVVGTMERFMAYLTEIY 490

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N +AH +   +  +K+ A   +V      D   E++G +
Sbjct: 491 KGAFPTW---LAPEQVHIIPVNEEAHGEYADNLAKKMKAANIRVNV----DHRNEKMGYK 543

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              A     P  ++VG    +++ V ++      + +MS E  +N
Sbjct: 544 IREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQNEMSQEAFMN 588


>gi|18311304|ref|NP_563238.1| threonyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|110801319|ref|YP_697012.1| threonyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168205151|ref|ZP_02631156.1| threonyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168210374|ref|ZP_02635999.1| threonyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|168213233|ref|ZP_02638858.1| threonyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168216713|ref|ZP_02642338.1| threonyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182625789|ref|ZP_02953556.1| threonyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|22654117|sp|Q8XI02|SYT_CLOPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123148532|sp|Q0TMX8|SYT_CLOP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18145987|dbj|BAB82028.1| threonine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110675966|gb|ABG84953.1| threonyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170663286|gb|EDT15969.1| threonyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170711530|gb|EDT23712.1| threonyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170715283|gb|EDT27465.1| threonyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177908945|gb|EDT71432.1| threonyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182381219|gb|EDT78698.1| threonyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 643

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 159/409 (38%), Gaps = 44/409 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G + +  +   I +E+ R G +    P +  +DL+  SG +D Y   M  L
Sbjct: 259 QGLPLLMPKGARIIQTLQRWIEDEEQRRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D    + ++   P        I+ S   SYR+LP  F +    FR+E      G++R R
Sbjct: 319 GDEEKDSEVFALRPMTCPFQYAIYNSTQHSYRDLPVRFAETSTLFRNESSGEMHGLIRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F + D +    TPE  +  +         +   LG            I  D+++ F   
Sbjct: 379 QFTLADGHIV-CTPEQLEDEFKNTVDLVKYVMETLG------------IADDITYRFSKW 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTD--FDDIISLNSI----VEQWTAPYAATSDVHNEKL 267
            D   T+      +++ P   ENT     +I++  +I     +   A Y    D+  + +
Sbjct: 426 -DPNNTE-----KYINDPEAWENTQNIMREILNHLNIDFTEADDEAAFYGPKLDIQFKNV 479

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K  +   I++     F       M    K  + K  Y+   S  IG      A
Sbjct: 480 -----HGKEDTIITIQID----FALAERFGMYYIDKDGEKKRPYIIHRS-SIGCYERTLA 529

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    W   +AP +  ++ +   D+   D   ++   L + G  V  D   E+
Sbjct: 530 MLIEKYAGALPTW---IAPVQAKVLPLS--DKYA-DYANEVVEELRRRGVRVEADHRAEK 583

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +   A L   P  ++VG K   + +V ++ R  G    M L + +N
Sbjct: 584 IGYKIREARLERTPYILVVGEKEAENKEVSVRSRKNGEEGAMPLADFVN 632


>gi|196045229|ref|ZP_03112461.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196023813|gb|EDX62488.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
          Length = 476

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   T    + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKATSHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 376


>gi|254369559|ref|ZP_04985570.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122513|gb|EDO66648.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 634

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 145/382 (37%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       +     A Y    + H   L 
Sbjct: 433 DK-------------SEQMLKNALDANNVSYE-------LFPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVSVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFIMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|115315107|ref|YP_763830.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|122324891|sp|Q0BL41|SYT_FRATO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115130006|gb|ABI83193.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 634

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 145/382 (37%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       +     A Y    + H   L 
Sbjct: 433 DK-------------SEQILKNALDANNVSYE-------LFPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVSVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFIMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|77919019|ref|YP_356834.1| threonyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123770467|sp|Q3A4P3|SYT_PELCD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77545102|gb|ABA88664.1| Ser-tRNA(Thr) hydrolase [Pelobacter carbinolicus DSM 2380]
          Length = 638

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 156/414 (37%), Gaps = 45/414 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R E  R G   +  P +   DLW  SG +D+Y +E +   
Sbjct: 265 GLVIWHPKGALLRTLLEDFERREHLRRGYDIVMGPQILRTDLWKTSGHFDNY-RENMYFT 323

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D + +     P +      I+++  +SYR+LP  ++++    R E      G++R R F 
Sbjct: 324 DVDGQGYGIKPMNCLAHMLIYKARQRSYRDLPLRYFELGTVHRHEKSGVLHGLLRVRGFT 383

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVL 213
             DA+    TP+       ++      +    G +    I  R E   IG D        
Sbjct: 384 QDDAHII-CTPDQLDEEIKRVLEFVRDVMAIFGFEYEIEISTRPEKS-IGSD-------- 433

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD             D  +P +  + D             A Y    D+   KL D+L  
Sbjct: 434 ADWERATGALMNALKDLELPHDVNEGD------------GAFYGPKIDI---KLKDAL-- 476

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESS 332
           ++R     I+    F    ++ L    T+ G DG+ H  V +    +GA+     V+   
Sbjct: 477 DRRWQCATIQCD--FTLPERFDL----TYVGKDGEKHRPVMLHRVILGAIERFIGVLIEH 530

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + G   +W   +AP +  +IN+  +     D  + +   L   G  V  D   E++G + 
Sbjct: 531 YAGNFPLW---LAPVQAVVINVTDNQA---DYAKSVSDALRAAGVRVQCDLRNEKLGFKI 584

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             A +   P  ++VG   +SD  V  + R     E MS E+   +        R
Sbjct: 585 REAQVDKIPYMLVVGDTEMSDGTVAPRFRSGKNLEPMSPEDFARFVQEECDQYR 638


>gi|330977708|gb|EGH77611.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 477

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 14/209 (6%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + Y L I +   RD      K+  R G+ H  + + G+  W P G      +   +R+ Q
Sbjct: 229 AAYILRIEKAEKRD----HRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQ 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW +SG + +Y   M      +    I  P +      +F   
Sbjct: 285 RENGYLEIKTPQVVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR LP    +     R+E      G+MR R F   DA+ F    E    + +  F+ 
Sbjct: 344 LKSYRELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIK 401

Query: 181 Y-LRIFHRLGLKSIPMRAESGP---IGGD 205
             L ++   G K I ++  + P   +G D
Sbjct: 402 LTLDVYADFGFKDIELKLSTRPEKRVGSD 430


>gi|89256700|ref|YP_514062.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|156502860|ref|YP_001428925.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010452|ref|ZP_02275383.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368007|ref|ZP_04984027.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|290954131|ref|ZP_06558752.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312449|ref|ZP_06803221.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|122999730|sp|Q2A2J0|SYT_FRATH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223341|sp|A7NDB6|SYT_FRATF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89144531|emb|CAJ79846.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253817|gb|EBA52911.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253463|gb|ABU61969.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 634

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 145/382 (37%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R   N+ G  E+  P +    LW +SG    Y + 
Sbjct: 255 QEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYGCSEIRTPLIADFSLWQKSGHASKYAEN 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G++R
Sbjct: 315 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F  TPE  +     M      ++   G     ++    P   IG D + 
Sbjct: 374 VRSFTQDDGHIF-CTPEQVEEEVILMVQQCFEVYKDFGFNDFAVKIALRPENRIGDDETW 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       +     A Y    + H   L 
Sbjct: 433 DK-------------SEQILKNALDANNVSYE-------LFPGEGAFYGPKIEFH---LK 469

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G+    V +    +G++   
Sbjct: 470 DAI-------GRSWQCGTI---QLDFSMPQRLGATYIDKNGEKQVSVMLHRAIVGSLERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +++++ I  +     D C++++  L K G     D   
Sbjct: 520 IGMLIEHYAGNLPLW---LAPVQVAVMGISNNQD---DYCKEVFIMLEKNGIRAKLDLRN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 574 EKIGFKIREHTLLRVPYLVILG 595


>gi|300771911|ref|ZP_07081782.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761297|gb|EFK58122.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 5/158 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D +G+
Sbjct: 232 GKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEHVWASSWGV-STRLMGALIMAHSDDQGL 290

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I   D+   +     + + A L      V +DD   Q  G +FA 
Sbjct: 291 VLPPMLAPVQVVIVPIYRTDEEKTNIDVFVDGLSAELKAKNISVKYDDRDTQRPGFKFAE 350

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +L G PL+V VG++ + +  VE+  R T  +E +S E
Sbjct: 351 WELKGVPLRVAVGARDMQNGTVELARRDTQTKETVSQE 388



 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +R  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 114 EEELIVRPTSETIIWNTYRGWIESYRDLPILVNQWANVVRWEMRTRL-FLRTAEFLWQEG 172

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + +     KM   Y
Sbjct: 173 HTAHATSQEAIEETEKMLGVY 193


>gi|218506382|ref|ZP_03504260.1| prolyl-tRNA synthetase [Rhizobium etli Brasil 5]
          Length = 37

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           +PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+YG
Sbjct: 1   MPTLQSAELWQESGRYDAYGKEMLRIKDRQERPMLYG 37


>gi|314933837|ref|ZP_07841202.1| threonine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653987|gb|EFS17744.1| threonine--tRNA ligase [Staphylococcus caprae C87]
          Length = 645

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 169/405 (41%), Gaps = 41/405 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y  +M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQDDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ + M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDETEEMVLRPMNCPHHMMIYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D++ F + P+  K  + ++      ++   G K    R +   P   +   +   + 
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIQEVYEDFGFKDYTFRLSYRDPEDKEKYMDDDEMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E+ +  + D M  P             + +I E   A Y    DV   ++  ++ + 
Sbjct: 441 NKAESMLKEAVDEMGLPY------------VEAIGE--AAFYGPKLDV---QVKTAMGKE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G+DG+ H   +   G+ +   R VA + E +
Sbjct: 484 ETLSTAQLD----FLLPERFEL----TYIGSDGEQHRPVVIHRGVVSTMERFVAFLTEET 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G 
Sbjct: 536 ---KG-AFPTWLAPKQVEIIPVNVDLH----YDYARQLQDELKSQGVRVEIDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 588 KIREAQMQKIPYQIVVGDKEVENNEVNVRQYGSQDQETLEKDEFI 632


>gi|227543651|ref|ZP_03973700.1| threonine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300908708|ref|ZP_07126171.1| threonine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227186362|gb|EEI66433.1| threonine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300894115|gb|EFK87473.1| threonine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 627

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 163/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + +   G   +  P L + D +  SG ++ Y  +M    
Sbjct: 243 GLPYWLPKGATIRRTIERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWEHYRDDMFPPM 302

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 303 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRDLPLRIAELGMMHRYEKSGALSGLQRVREM 362

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +T +  +  + K+    + ++    +     R              + L D
Sbjct: 363 TLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDFDITDYSFR--------------LSLRD 407

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
               + + + D M     S      D ++L+    E   A Y    D+  +    +L  +
Sbjct: 408 PKNVKKYYANDEMWEKSQSMLKSAMDDLNLDYYEAEGEAAFYGPKLDIQTKT---ALGND 464

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ G DGK+H   M   G +G M    A +   +
Sbjct: 465 ETMSTIQLD----FMLPERFGL----SYVGQDGKEHQPVMIHRGVVGTMERFMAYLTEIY 516

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N +AH +   +  +K+ A   +V      D   E++G +
Sbjct: 517 KGAFPTW---LAPEQVHIIPVNEEAHGEYADNLAKKMKAANIRVNV----DHRNEKMGYK 569

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              A     P  ++VG    +++ V ++      + +MS E  +N
Sbjct: 570 IREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQNEMSQEAFMN 614


>gi|163782015|ref|ZP_02177014.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882547|gb|EDP76052.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 641

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 158/422 (37%), Gaps = 61/422 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +    +EE  + G   +  P +  + LW  SG  + Y   M    
Sbjct: 266 GLVLWLPRGSIYRKVLEDYWKEEHIKRGYQFVYTPHVGKSKLWEISGHLECYKPNMFPAM 325

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +     P +      I++S ++SY++LP    ++   +R E+     G++R R F 
Sbjct: 326 EMEGEEYYVKPMNCPFHIAIYKSKVRSYKDLPVKLAELGTVYRYEMSGVLHGLLRVRGFT 385

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    TPE             L +    G     +   + P   IG D   E    
Sbjct: 386 QDDAHII-CTPEQVDEVIRDTLDLALSMLKDFGFDDFKIYVSTRPEDAIGSDEQWEV--- 441

Query: 214 ADTGETQVFCSKDFMDFPIPSENT---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                               SEN      +D+     I E   A Y    DV   K+ D+
Sbjct: 442 --------------------SENALKKAVEDLGYTYEIDEGGGAFYGPKIDV---KIRDA 478

Query: 271 LPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRV 324
                        +G ++   T    ++LP     T+ G D K H   M     +G++  
Sbjct: 479 -------------IGRLWQCSTIQFDFNLPERFDMTYVGPDNKKHRPYMIHRAFLGSIER 525

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDD 383
              ++   + G   +W   ++P +  ++ I   H +  R    K+ +RL + G  V  D+
Sbjct: 526 FTGILLEHYAGLLPVW---LSPTQARIVPIADRHLEYGR----KVLSRLQEEGFRVDMDE 578

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E++ ++   A+L+  P  ++VG + V    V ++ +  G    MSLEE I +   +  
Sbjct: 579 RDERMNAKIREAELMKIPYVLVVGDREVEAGTVSVRSKKEGNLGSMSLEEFIEHLREKVE 638

Query: 444 NN 445
             
Sbjct: 639 RK 640


>gi|317127978|ref|YP_004094260.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315472926|gb|ADU29529.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 478

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 65/331 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++  ++   IKSYR+LP    Q    FR E +     +R+ EFL ++ ++  +  
Sbjct: 104 PTSETMIGHLYSKWIKSYRDLPVLINQWANVFRWE-KKTLPFIRTSEFLWQEGHTAHVDE 162

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           E ++    +M   Y  +    GL +IP+   E  P     S  F    DT          
Sbjct: 163 EDARKETMQMLNIYKEVVE--GLLAIPVYDGEKTP-----SERFAGAVDT---------- 205

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                            S+ ++++   A  A TS                          
Sbjct: 206 ----------------YSIEAMMKDGKAVQAGTS-------------------------- 223

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             Y GTK++      +   + K   V   S+G  + R++ +VI    D +G++ P  +AP
Sbjct: 224 -HYLGTKFAEAFDIKYLTRENKHENVHTTSWGT-STRLIGSVIMVHGDEQGLVLPPRIAP 281

Query: 347 FKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            ++ LI +     +    D  ++I+  L   G  V  DD  +  G +F   +L G P+++
Sbjct: 282 TQVVLIPVGPWKKNPAIIDKLDEIFVALKVKGIRVRLDDSDQSPGYKFNEWELKGVPVRI 341

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +G + +  ++V +K R    +  +SL+ V+
Sbjct: 342 ELGPRDLEGNQVMMKARDEREKLVVSLDTVV 372


>gi|229549033|ref|ZP_04437758.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|312904390|ref|ZP_07763551.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|229305826|gb|EEN71822.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|310632289|gb|EFQ15572.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315162804|gb|EFU06821.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315576849|gb|EFU89040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 660

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 172/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++ R G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEIRLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|10580016|gb|AAG18956.1| proline-tRNA synthetase [Halobacterium sp. NRC-1]
          Length = 465

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 131/350 (37%), Gaps = 78/350 (22%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           WV  G +D   +   RLA R        PT E ++       ++S+R+LP    Q     
Sbjct: 61  WVTQGGHDDLDQ---RLAVR--------PTSESIIAPYLSQWVRSHRDLPLRVNQWNSVV 109

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E        R++EFL ++ ++   T E +          Y R++    +  IP+    
Sbjct: 110 RWEATETKPFFRTKEFLWQEGHTAHATDEAAWAETTLRLDQYHRLYE--DVLGIPVLRGR 167

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P      H+    ADT                          +S+ ++           
Sbjct: 168 KP-----DHDKFPGADT-------------------------TMSVEAL----------- 186

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      +P+ K V       G   + G  ++     TF   D  +      S+G+
Sbjct: 187 -----------MPDGKSVQG-----GTSHHLGQSFADAFDITFADEDEAERTAYTTSWGL 230

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKV 375
            + R + A++ S  D +G++ P +VAP ++ ++ I   D   +D  E+    I A L   
Sbjct: 231 -SWRAIGALVMSHSDDQGLVLPPTVAPKQVVIVPIWQED--TKDDVEQYGAEIAAELEAQ 287

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G  V +DD  G   G +F   +L G P++  +G   V D +V + HR  G
Sbjct: 288 GVRVHFDDRDGRNPGFKFNEWELNGVPVRFEIGPNEVEDDEVTVVHRPDG 337


>gi|18313148|ref|NP_559815.1| prolyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|74580888|sp|Q8ZVQ9|SYP_PYRAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18160660|gb|AAL63997.1| prolyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 488

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G + Y GT ++     T+  ADG        SYGI    + A +I    DG G 
Sbjct: 226 GRSLQIGTVHYLGTNFTKVFEVTYLDADGTRKLAHTTSYGISERSIAAMLITHGDDG-GT 284

Query: 339 IWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
             P  +AP ++ +I I   ++   +      +   RL++ G  V+ D+  ++  G +F  
Sbjct: 285 TLPPKLAPIQVVVIPIYYGEEEAPLVMPLVRETANRLNEAGIRVYVDERADKTPGWKFYY 344

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +L G PL+V +G + V   +  I  R T  +  +S+ E+++
Sbjct: 345 WELKGVPLRVEIGKRDVEKRQAVIARRDTLEKYAVSINELVD 386



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG Y W P G K   NV  +IR+  + TG  E+  P     + +  ES     + KE+  
Sbjct: 40  KGAYVWRPYGMKIRRNVENLIRKFHDETGHEEVLFPVFIPYEFFGKESQHIKGFEKEVFW 99

Query: 96  LADRNDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++   +    ++  PT E  +  + +  I+ Y++LP   YQI   FR E +    ++R R
Sbjct: 100 VSKGGEAGERLVLRPTSETAIMPMVKLWIQDYKDLPLRVYQIVSVFRAETKMTHPMIRLR 159

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           E  M K+A++     E ++    +    Y RIF  + L
Sbjct: 160 EISMFKEAHTVHADKEDAERQVREAVEIYKRIFDEMCL 197


>gi|319898981|ref|YP_004159074.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319402945|emb|CBI76496.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 658

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 167/418 (39%), Gaps = 52/418 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W P G K   N+ + +R   +     E+  P +    LW  SG +  Y + 
Sbjct: 260 QEEGPGMIFWHPKGWKMFQNLISYMRRRLDDHKYAEVQAPQVLDKSLWEVSGHWRWYKEN 319

Query: 93  MLRL---ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    AD  +   IY   P +      IF+  +KSYR+LP    +  L  R E     
Sbjct: 320 MFKTIPAADDWNNEYIYALKPMNCPGHVQIFKHGLKSYRDLPIRLAEFGLVHRYEPSGSL 379

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            G+MR+R F   DA+ F    + +    S N + +S    +   G + I ++  + P   
Sbjct: 380 HGLMRARSFTQDDAHIFCTEEQLADECLSINDLILS---TYADFGFEEISLKLSTRP--- 433

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                        E +V  S +  D    +EN     + S+   +E+ ++     S +  
Sbjct: 434 -------------EKRV-GSDELWDH---AENI----MTSVLKTIEKKSSGRVRISILPG 472

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTK---YSLP--MSATFKGADGKDHYVQMGSYGI 319
           E  F   P+ +      I  G  +  GT    ++LP    A +   D +     M    I
Sbjct: 473 EGAFYG-PKFEYTLKDAI--GREWQCGTTQVDFNLPERFGAFYIDKDSEKRQPVMIHRAI 529

Query: 320 -GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G+M     ++  +  G    W   +AP +I++  I +      D  +KI A+L  +G  
Sbjct: 530 FGSMERFLGILIENFSGHMPFW---LAPQQIAVATITSD---ANDYAKKITAKLKAIGLS 583

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-MSLEEVI 435
           V  D   E+I  +     L   P+ ++ G +    + V ++ RL  + +  +SLEEVI
Sbjct: 584 VILDSRNEKINYKIREHSLQKIPVILVCGKREAETNSVNMR-RLGSVEQSLLSLEEVI 640


>gi|288560211|ref|YP_003423697.1| prolyl-tRNA synthetase ProS [Methanobrevibacter ruminantium M1]
 gi|288542921|gb|ADC46805.1| prolyl-tRNA synthetase ProS [Methanobrevibacter ruminantium M1]
          Length = 468

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G +   G  ++     TF+  +G   Y     YGI   RV+AA I +  D KG+
Sbjct: 212 GKTLQIGTVHNLGQTFAKTFEITFENKEGNHEYAYQTCYGISD-RVIAAAIAAHGDEKGL 270

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I P  +AP +I++I I   D  +     C +I   L   G  V  D    + G +F   +
Sbjct: 271 ILPPRIAPKQITIIPIIFKDGGEEVMAKCLEIKKSLESKGIRVQMDTRDIRPGKKFFDWE 330

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           L G PL+  +G + + ++   +  R TG + ++SLE+
Sbjct: 331 LKGTPLRFELGPRDLKNNVAILGRRDTGEKIEISLED 367


>gi|223044090|ref|ZP_03614129.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442484|gb|EEE48590.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 645

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 169/405 (41%), Gaps = 41/405 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y  +M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQDDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ + M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDETEEMVLRPMNCPHHMMIYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D++ F + P+  K  + ++      ++   G K    R +   P   +   +   + 
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIQEVYEDFGFKDYTFRLSYRDPEDKEKYMDDDEMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E+ +  + D M  P             + +I E   A Y    DV   ++  ++ + 
Sbjct: 441 NKAESMLKEAVDEMGLPY------------VEAIGE--AAFYGPKLDV---QVKTAMGKE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G+DG+ H   +   G+ +   R VA + E +
Sbjct: 484 ETLSTAQLD----FLLPERFEL----TYIGSDGEQHRPVVIHRGVVSTMERFVAFLTEET 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G 
Sbjct: 536 ---KG-AFPTWLAPKQVEIIPVNVDLH----YDYARQLQDELKSQGVRVEIDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 588 KIREAQMQKIPYQIVVGDKEVENNEVNVRQYGSQDQETLEKDEFI 632


>gi|227540188|ref|ZP_03970237.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240049|gb|EEI90064.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 5/158 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D +G+
Sbjct: 232 GKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEHVWASSWGV-STRLMGALIMAHSDDQGL 290

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I   D+   +     + + A L      V +DD   Q  G +FA 
Sbjct: 291 VLPPMLAPIQVVIVPIYRTDEEKANIDVFVDGLNAELKAKNISVKYDDRDTQRPGFKFAE 350

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +L G PL+V VG++ + +  VE+  R T  +E +S E
Sbjct: 351 WELKGVPLRVAVGARDMQNDTVELARRDTQTKETVSQE 388



 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +R  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 114 EEELIVRPTSETIIWNTYRGWIESYRDLPILVNQWANVVRWEMRTRL-FLRTAEFLWQEG 172

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + +     KM   Y
Sbjct: 173 HTAHATSQEAIEETEKMLGVY 193


>gi|303325499|ref|ZP_07355942.1| threonine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302863415|gb|EFL86346.1| threonine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 648

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 164/409 (40%), Gaps = 48/409 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  WLP G      +    R+E  + G   +  P L   + W  SG YD Y +E + 
Sbjct: 263 APGMVFWLPKGMLVRAILEDFWRKEHLKRGYDMVQGPQLLRVETWQRSGHYDHY-RENMY 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                D A    P +      I+++ ++SYR+LP  ++++ +  R E      G++R R+
Sbjct: 322 FTRIEDDAYGIKPMNCIAHMLIYKNELRSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQ 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFI 211
           F   DA+     PE  +     +      + H  G +   ++  R ES  IG D + E  
Sbjct: 382 FTQDDAHIL-CAPEQLEGEILGVIHLIRDLMHLFGFQYKVAVSTRPESS-IGTDEAWE-- 437

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA     Q    K  + + I + +  F                Y    DV   +L D +
Sbjct: 438 -LATNALIQA-VEKAGLPYEINAGDGAF----------------YGPKIDV---RLLDCI 476

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIE 330
               + S   ++    F    ++ L    T+ G DG+ H   M    I G++     V+ 
Sbjct: 477 GREWQCSTIQVD----FTLPERFDL----TYVGQDGERHRPVMVHRAIMGSLERFIGVLI 528

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G    W   +AP +  L+ +    +      E++   L  +G  V  D   E++G 
Sbjct: 529 EQYAGALPAW---LAPEQARLLTVT---EAGDATVERMRGELQALGIRVTADTRNEKLGF 582

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +   A +   P  ++VG K V    V ++ R +G  E++ L+ + + A+
Sbjct: 583 KVREAQVAKVPYILVVGEKEVQADGVNVRLR-SG--ENLGLKSIADVAA 628


>gi|148264672|ref|YP_001231378.1| threonyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146398172|gb|ABQ26805.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Geobacter
           uraniireducens Rf4]
          Length = 645

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 161/410 (39%), Gaps = 55/410 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  R G   +  P +   +LW  SG YD+Y +E +   
Sbjct: 272 GLVIWHPKGAMLRTILEDFERKEHFRRGYDIVVGPQILKTELWQRSGHYDNY-RENMYFT 330

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +++     P +      I++S ++SYR+LP  ++++    R E      G++R R F 
Sbjct: 331 EVDEQGYGIKPMNCLAHMMIYKSQLRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFT 390

Query: 157 MKDAYSFDLTPE---GSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEF 210
             DA+    TPE   G            + IF   + + L + P ++    IG D   E 
Sbjct: 391 QDDAHIL-CTPEQLDGEIKGVLSFVKDVMGIFGFEYEMELSTRPEKS----IGSDEDWER 445

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A  G  Q        D   P E  + D             A Y    D+   KL D+
Sbjct: 446 ATKALLGALQ--------DSGRPFEINEGD------------GAFYGPKIDI---KLRDA 482

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L  ++R     I+          ++LP     T+ GADG K   V +    +GA+     
Sbjct: 483 L--DRRWQCATIQC--------DFTLPERFDLTYIGADGEKKRPVMVHRVILGAIERFIG 532

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+     G   +W   +AP +  ++ +   +QV      +IY  L   G  V  D   E+
Sbjct: 533 VLIEHFAGSFPVW---LAPVQAIVLTV-TDNQVS--YANEIYTALRAAGIRVQQDFRNEK 586

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G +   A L   P  +I+G K V    V  + R     + M   E+I +
Sbjct: 587 LGFKIREAQLQKIPYMLIIGDKEVESGMVTPRFRDGNNLDSMKPAELIEF 636


>gi|126663528|ref|ZP_01734525.1| threonine--tRNA ligase (threonine tRNA synthetase) [Flavobacteria
           bacterium BAL38]
 gi|126624476|gb|EAZ95167.1| threonine--tRNA ligase (threonine tRNA synthetase) [Flavobacteria
           bacterium BAL38]
          Length = 633

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 81/402 (20%), Positives = 148/402 (36%), Gaps = 61/402 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G    D +   +++ Q + G  ++  P +   DL+V SG Y  YG +  + 
Sbjct: 246 QGLPLWLPKGAALRDRLEQFLKKAQKKAGYEQVVTPHIGMKDLYVTSGHYAKYGADSFQP 305

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I+ +   SY++LP  + +    +R E      G+ R R
Sbjct: 306 IHTPAEGEEFLLKPMNCPHHCEIYNARPWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVR 365

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TP+     +  +    L +F  LG                        
Sbjct: 366 GFTQDDAHIF-CTPDQLDTEFKNVIDLVLYVFGSLG------------------------ 400

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                        F +F       D D+       VE W     A      +K  + + E
Sbjct: 401 -------------FENFTAQVSVRDLDNPDKYIGSVENWEKAENAIISAAKDKGLNYVIE 447

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP     T+KG+D K H  V +     
Sbjct: 448 AGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFELTYKGSDDKLHRPVMIHRAPF 507

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+M    A++     G   IW   + P +  ++++    +   +  +K+   L       
Sbjct: 508 GSMERFIAILLEHTAGNFPIW---LMPEQAIILSL---SEKYENYAKKVLDLLENHEIRA 561

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             D+  E IG +   A++  +P  +IVG +   +  + ++ R
Sbjct: 562 LIDNRNETIGKKIREAEMNKYPFMLIVGEEEEKNGTISVRQR 603


>gi|229100656|ref|ZP_04231504.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
 gi|229119259|ref|ZP_04248564.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228664184|gb|EEL19720.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228682749|gb|EEL36779.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
          Length = 476

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D  G+
Sbjct: 223 GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGL 281

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F   ++ 
Sbjct: 282 VMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKVA-RVKIDASTKTPGWKFNEYEMK 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 341 GIPIRLEVGPKDIEKNQVVLVRRDTKEKECISMDQL 376


>gi|58337807|ref|YP_194392.1| threonyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227904456|ref|ZP_04022261.1| theronyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|73919799|sp|Q5FIW3|SYT_LACAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58255124|gb|AAV43361.1| theronyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227867831|gb|EEJ75252.1| theronyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 644

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 162/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYKHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VELDQVQSEFAKILKLIMDVYRDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFGL----TYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      EK+   L+K G  V  DD  E++G +
Sbjct: 534 KGAFPTW---LAPVQAEIIPVNNEAHGEY----AEKVRQELAKRGFRVEVDDRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + + +  V ++   T      SL++ IN
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLDDFIN 631


>gi|15673893|ref|NP_268068.1| theronyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281492524|ref|YP_003354504.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|22654138|sp|Q9CED2|SYT_LACLA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12724948|gb|AAK06009.1|AE006421_2 theronyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281376188|gb|ADA65679.1| Threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|326407464|gb|ADZ64535.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 646

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 170/412 (41%), Gaps = 37/412 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WLP G      +   + +++ + G   +  P + + + + +SG +  Y ++M    
Sbjct: 262 GTAYWLPAGATIRRIIERFVVDQEVKNGYQHVITPVMMNLNTYKQSGHWQHYHEDMYPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D + M   P +      I++ H+ SYR LP    +  +  R E      G+ R RE 
Sbjct: 322 DMGDGEEMELRPMNCPSHIAIYKHHVHSYRELPIRIAEFGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  E  +  ++K+    + ++   G+     R         LS+      D
Sbjct: 382 TLNDGHTF-VMLEQVQEEFSKILQLIMDMYRDFGINDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T  +   D M     +      D ++L+ +  E   A Y    D+   ++  +L   
Sbjct: 427 PKDTVKYFPDDEMWEKSQAMLKATMDDMNLDYVEAEGEAAFYGPKLDI---QVKTALGNE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++  +   F   Y         GADG+ H   M   G+ +   R +A +IE  
Sbjct: 484 ETLSTIQLDFLNPENFDISYI--------GADGEKHRPVMIHRGVISTLERFIAYLIEVY 535

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP + ++I +  ++++  D   KI   L   G  V  D+  E++G + 
Sbjct: 536 ---KG-AFPTWLAPTQATIIPV--NNEIHADYAWKIQRELQDKGFRVVVDEANEKMGWKI 589

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +     P Q+++G +  +D  V I+   +   + + LEE I   S   +N
Sbjct: 590 RQSQTHKIPYQIVIGDQEQADGTVNIRRYGSKETKVIPLEEFIENISADVAN 641


>gi|15806285|ref|NP_294990.1| prolyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|81858880|sp|Q9RUW4|SYP_DEIRA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6459012|gb|AAF10837.1|AE001974_2 prolyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 499

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 76/408 (18%), Positives = 157/408 (38%), Gaps = 71/408 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G    +N+   + +    +G   +  PTL   +  + E+   + +  E+  +     +
Sbjct: 56  PYGSALWENIQRWLDDRFKASGHESLIFPTLIPMNFIMKEADHVEGFAPELFTVNKIGTE 115

Query: 103 AM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +    +  PT E ++  ++   + SYR+LPF  YQ    FR ELR +   +R+ EF   
Sbjct: 116 ELAEPYVMRPTSETIIGHMWSGWLNSYRDLPFLHYQWGSVFRAELRTK-AFLRTSEFFWH 174

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++       ++    +                            DL HEF        
Sbjct: 175 EGHTAHADEAEARAEVRQQL--------------------------DLYHEFC------- 201

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 +D +  P+         +    +  E++    A  S            E     
Sbjct: 202 ------RDVLALPV---------VRGEKTASERFAGAVATYS-----------IEGMMRD 235

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  +S      ++  + K+ +    S+ I + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHYLGQNFSRAFDVKYQTREQKEEFAHTTSWAISS-RIIGAIIMTHGDDSGL 294

Query: 339 IWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I +      DQ+ ++  EK+ A L   G  V  D   G   G ++  
Sbjct: 295 MMPPRIAPIQVVVIPVGRKDNFDQMVQEG-EKLAAELRAQGLRVKVDGRDGVTNGFKYND 353

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +L G P+++ +G + +    + +K+R +  +E +   E ++  S R 
Sbjct: 354 WELKGVPVRIELGPRDLESGVLVVKNRHSEDKETLPRAEAVSGMSARL 401


>gi|291542076|emb|CBL15186.1| prolyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 479

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   YFG  ++     T+ G D K HY    S+G+ + R++ A+I    D  G++ 
Sbjct: 227 ALQGGTSHYFGDGFAKSFGITYTGKDNKLHYPHQTSWGV-STRMIGALIMVHSDDDGLVL 285

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  ++P +++LI +  H +   +  E++   L++    V  D      G +FA  ++ G 
Sbjct: 286 PPKISPIQVALIPVAQHKEGVLEKAEELRKALAE-KFRVKLDSSDHAPGWKFAEYEMKGV 344

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           P++V +G K +  ++  +  R T  +  +S++E++ +  +
Sbjct: 345 PVRVEIGPKDIEKNQCVVVRRDTREKAFVSIDELVPFVEN 384


>gi|295111615|emb|CBL28365.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Synergistetes
           bacterium SGP1]
          Length = 633

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 161/423 (38%), Gaps = 56/423 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G   ++ +    R E  R G  E+  P +   +LW+ SG +D Y +
Sbjct: 253 LHEEGPGFPFFHPKGMVVMNTLIDFWRREHVRRGYQEVRTPQILDRELWLRSGHWDHY-R 311

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + ++K     P +      I+++ + SYR LP    ++ +  R E      G+M
Sbjct: 312 ENMYFTEIDEKPFAIKPMNCPGGILIYKTQLHSYRELPMRIGELGVVHRHERSGVLHGLM 371

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+   L  E S+     M           G+  +     S   G   + E 
Sbjct: 372 RVRCFTQDDAH---LYCEPSQIQQEVM-----------GIMDLCRYVYSDVFGFKYAVEL 417

Query: 211 IVLADT--GETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               +   G T+ +  +++ +   +   NT +        + E   A Y    D H E  
Sbjct: 418 STKPENAMGSTEQWEAAENGLRAALEQSNTPY-------RVNEGDGAFYGPKIDFHLEDC 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGA 321
                           +G  +  GT    + +P      +   DGK+H  V +    +G+
Sbjct: 471 ----------------IGRTWQCGTIQLDFQMPERFDMHYIAEDGKEHRPVMLHRTILGS 514

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVF 380
           +     ++   + G    W   +AP +  LI I +AH    R   E++   L   G    
Sbjct: 515 LERFMGILIEHYAGAFPYW---IAPVQAELIPISEAH----RAYAEELRKELMSWGVRTE 567

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D   E++G +   A L   P  +++G K   + +V ++ R  G    MSLE      S 
Sbjct: 568 TDSRDEKLGKRIRDAQLQKVPYMIVIGDKERDERQVAVRERTKGDLGSMSLEAFQKLLSA 627

Query: 441 RFS 443
            F+
Sbjct: 628 EFN 630


>gi|167589762|ref|ZP_02382150.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ubonensis
           Bu]
          Length = 406

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 31  MIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           + HQ   S G   W P G      V   IRE   + G  E+  P + S  LW +SG ++ 
Sbjct: 15  LFHQQDESPGAVFWHPRGMALYRVVEEYIRERMRQAGFAEVRTPQIASRALWEQSGHWEK 74

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           +G+ M  L D + +     P        +F+   +SYR+LP  + +     R E      
Sbjct: 75  FGRNMFSL-DSDGQPFCLKPMSCPCHVQVFKRGSRSYRDLPVRYSEFGAVHRAEPSGSLH 133

Query: 148 GVMRSREFLMKDAY 161
           G+MR+R F   DA+
Sbjct: 134 GLMRARAFTQDDAH 147


>gi|317502695|ref|ZP_07960807.1| proline--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315666181|gb|EFV05736.1| proline--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 493

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 84/161 (52%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVQFLNKENKPDYVWATSWGV-STRLMGALIMVHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I   D+      D  + +  ++ ++G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVIVPIYKGDEQRKAISDKLQPVITKMQELGISVKFDDSDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++++G + + ++ +EI  R T  +E++S + ++
Sbjct: 355 YELKGVPVRLVMGGRDLENNTIEIMRRDTLEKENVSFDGIV 395



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + D+ +I  PT E ++ + +R  I S+R+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLDEELIIRPTSETIIWNTYRGWIHSWRDLPIMCNQWCNVMRWEMRTR-PFLRTSEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++     M   Y
Sbjct: 173 WQEGHTAHATKEEAEQEAQTMLKVY 197


>gi|313891921|ref|ZP_07825522.1| threonine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|329121028|ref|ZP_08249659.1| threonine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|313119564|gb|EFR42755.1| threonine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|327471190|gb|EGF16644.1| threonine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 634

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 149/375 (39%), Gaps = 51/375 (13%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTD 116
           RE   + G  E+  P + S +LW++SG +D Y + M     D  D A+   P +      
Sbjct: 281 RELFRKYGYEEIVTPIILSKNLWLQSGHWDHYRENMYFTKIDNEDYAV--KPMNCPGGIL 338

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            F++  +SYR+LP    +  L  R EL     G+ R R F   DA+ F +TP+  +    
Sbjct: 339 YFKTQQRSYRDLPKRVGEFGLVHRHELHGALHGLFRVRNFTQDDAHIF-MTPKDMESEVI 397

Query: 176 KMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            +   +  ++   GLK    +  R E+  +G D   E    A             +   I
Sbjct: 398 SVVNMFKELYDVFGLKYHIELSTRPENS-MGSDELWEIATNA-------------LRNAI 443

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            S N  +        I E   A Y    D H E   DSL        R  + G I     
Sbjct: 444 ESTNVSY-------RINEGDGAFYGPKLDFHIE---DSL-------GRTWQCGTI---QM 483

Query: 293 KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              LP     T+ G DG+ H  V +   G G++     ++   + G    +P   AP ++
Sbjct: 484 DMQLPERFDVTYVGEDGEKHRAVMIHRAGYGSLERFIGILIEHYAGA---FPTWCAPVQV 540

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +I +  +     +  +++Y ++ + G  V  D   + +G +   A +   P  V+VG K
Sbjct: 541 KIIPVSEN---YHNYAQEVYKKMFEQGIRVEIDKGNDTLGYKIRKAQMEKIPYMVVVGEK 597

Query: 410 FVSDSKVEIKHRLTG 424
             +   + ++ R  G
Sbjct: 598 ESNSGNISVRSREKG 612


>gi|228956855|ref|ZP_04118640.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802896|gb|EEM49729.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 502

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   T    + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKETDHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 122 VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 178

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 179 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 212

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 213 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 249 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  
Sbjct: 298 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKVA-RVKIDASNKTP 356

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 357 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 402


>gi|156083641|ref|XP_001609304.1| prolyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154796555|gb|EDO05736.1| prolyl-tRNA synthetase, putative [Babesia bovis]
          Length = 705

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 5/159 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S RGI+       GT ++      F+  +G        S+G    R +   I    D +G
Sbjct: 432 SGRGIQAATSHLLGTNFAKMFDIVFEDENGVKQLAHQTSWGF-TTRSIGVSIMIHGDDQG 490

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGCDVFWDD-MGEQIGSQFA 393
           ++ P  V+  +I ++ I A  ++ +D     E +YARL K G     DD +G   G +F 
Sbjct: 491 LVIPPRVSKVQIVIVPIIAKKELQKDIMAVAEDMYARLKKAGFRTHLDDRVGYTPGFKFN 550

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +L G PL++ +G++ +      + +R  G + D+ LE
Sbjct: 551 HWELRGVPLRIEIGARDIQTQSCRVCYRYNGHKTDVKLE 589



 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           ++R GM+  +   G Y +LP      +       E   + G      P   S   L  E 
Sbjct: 232 IIRGGMVEYYDISGCYIYLPSSYFIWEVFQQWFNENIKKEGVENCYFPMFVSKQKLETEK 291

Query: 84  GRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    D   +      PT E +M   F   I+S+R+LP    Q     
Sbjct: 292 NHIEGFSPEVAWVTKYGDSDFVEPIAIRPTSETIMYPEFSKWIRSHRDLPLKLNQWCSVV 351

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIP 194
           R E +     +RSREFL ++ ++   + E + ++   M   Y R +   L +  IP
Sbjct: 352 RWEFKQPTPFLRSREFLWQEGHTAHKSEEDAMNTVMTMLRLYQRFYEEFLAVPVIP 407


>gi|328951623|ref|YP_004368958.1| Prolyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451947|gb|AEB12848.1| Prolyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 477

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      F+  D +  YV   S+G+ + R + A+I +  D KG+
Sbjct: 221 GKALQAGTSHYLGTNFAKAFDIKFQDRDLETKYVHTTSWGL-SWRFIGAIIMTHGDDKGL 279

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVA 395
           I P  +AP ++ ++ I       R  +A + +  RL   G  V  DD  +   G +F   
Sbjct: 280 ILPPKLAPIQVVIVPIYKEATRARVLEAAQALEQRLKAQGVRVHLDDRDQYTPGYKFNDW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +L G P +V +G + V      +  RL G +E + LE +      R +
Sbjct: 340 ELRGVPYRVELGPRDVESGTAVLASRLGG-KETLPLEGLAEAVPQRLA 386



 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D  ++ +   PT E ++  ++   I+SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 99  GDALEEPLAVRPTSETIIGHMWAKWIRSYRDLPQLLNQWGNVVRWEMRTR-PFLRTSEFL 157

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP----MRAESGPIGG 204
            ++ ++   T E ++    +M   Y  +       +IP    M+ ES    G
Sbjct: 158 WQEGHTAHATQEEAEAETRRMLGVYATLAREYA--AIPVWEGMKTESEKFAG 207


>gi|255008477|ref|ZP_05280603.1| putative threonyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313146205|ref|ZP_07808398.1| threonine-tRNA ligase [Bacteroides fragilis 3_1_12]
 gi|313134972|gb|EFR52332.1| threonine-tRNA ligase [Bacteroides fragilis 3_1_12]
          Length = 646

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 161/433 (37%), Gaps = 88/433 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQDFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKG-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---------EQWTAPYAATSDVH 263
                   VF S DF         T+F+  ISL   V         E W     A  +  
Sbjct: 410 --------VFRSMDF---------TNFEAQISLRDKVNREKYIGSDENWEKAEQAIIEAC 452

Query: 264 NEKLFDSLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDH 310
            EK   +  E    +  G +        +G  +  GT    Y+LP      + G+D + H
Sbjct: 453 EEKGLKAKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKH 512

Query: 311 Y-VQMGSYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACE 366
             V +     G+M R VA +IE +  GK  +W  P+ V    IS        +   +  E
Sbjct: 513 RPVMIHRAPFGSMERFVAVLIEHTA-GKFPLWLTPEQVVILPIS--------EKFNEYAE 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L         DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +
Sbjct: 564 KVKTYLKTKEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDK 623

Query: 427 EDMSLE---EVIN 436
             M  E   E++N
Sbjct: 624 GTMKFEDFGEILN 636


>gi|327252835|gb|EGE64489.1| threonyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 622

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G   IW   +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 501 FIGILTEEFAGFFPIW---LAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 605


>gi|15895629|ref|NP_348978.1| threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|22654130|sp|Q97GK4|SYT_CLOAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15025373|gb|AAK80318.1|AE007736_8 Threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325509777|gb|ADZ21413.1| threonyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 637

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 174/438 (39%), Gaps = 54/438 (12%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ +L+E   RD      +L L T  +H+   G   + P G    + +    RE  ++ G
Sbjct: 231 YINMLEEAKKRDHRKIGKELDLFT--MHEEGPGFPFFHPKGMVLKNLLLNYWREVHDKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E+S P + +  LW +SG +D Y + M     D  D A+   P +      +++ +I S
Sbjct: 289 YDEISTPIILNEALWHQSGHWDHYKENMYFTKIDEADYAI--KPMNCPGSILVYKDNIHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN--KMFVSY 181
           YR LP    +I L  R E      G+MR R F   DA+ F    + ++      K+  S+
Sbjct: 347 YRELPIKLAEIGLVHRHEKSGALHGLMRVRCFNQDDAHIFMTKEQITEEILGVIKLIDSF 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++F       +  R E   +G D   E    A  G      + +               
Sbjct: 407 YKVFGFEYYVELSTRPEDS-MGSDEDWE---AATNGLINALNAAN--------------- 447

Query: 242 IISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
              L  IV +   A Y    D H   L D +        R  + G I      + +P   
Sbjct: 448 ---LEYIVNEGDGAFYGPKIDFH---LKDCI-------GRTWQCGTI---QLDFQMPERF 491

Query: 299 SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + GADG+ H  V +     G++     ++   + G    +P  +AP ++ ++NI   
Sbjct: 492 DINYIGADGEKHRPVMVHRVVFGSIERFIGILIEHYAGA---FPTWLAPVQVKVMNITDS 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                DA   I  +L + G  V  D   E+IG +   A L   P  +++G K + +  + 
Sbjct: 549 QVEYVDA---ISEKLKEAGIRVEKDVRNEKIGYKIREAQLKKVPYMIVIGDKEIKEGIIS 605

Query: 418 IKHRLTGIREDMSLEEVI 435
           ++ R  G    M++E+ I
Sbjct: 606 VRSRKEGDLGSMNIEDFI 623


>gi|9955215|pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With The Ligand Threonine
 gi|9955216|pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With The Ligand Threonine
 gi|9955217|pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955218|pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955219|pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955220|pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|12084202|pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase Complexed With A Seryl Adenylate Analog
 gi|12084203|pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase Complexed With A Seryl Adenylate Analog
 gi|20664135|pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664136|pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664137|pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664138|pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664139|pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664140|pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664141|pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664142|pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
          Length = 401

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 15  MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 74

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 75  AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 133

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 134 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 190

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 191 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 229

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 230 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 279

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 280 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 333

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 334 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 384


>gi|294631964|ref|ZP_06710524.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835297|gb|EFF93646.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 470

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/335 (20%), Positives = 134/335 (40%), Gaps = 62/335 (18%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ + F   ++SYR+LP    Q     R E+RPR   +R+ EFL ++ 
Sbjct: 103 EEPIVVRPTSETIVNEYFSKWVQSYRDLPLLINQWANVVRWEMRPRV-FLRTTEFLWQEG 161

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E ++        +Y    HR                 D+ H+F+V        
Sbjct: 162 HTAHATYEDAR--------AYAARIHR-----------------DVYHDFMV-------- 188

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                                +++++ ++ + T        ++   L   + + K     
Sbjct: 189 --------------------GVLAIDVVLGRKTVRERFAGAINTLTLEGMMGDGK----- 223

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            +++G     G  ++      +   DG+   V   S+G  + R+V  +I S  D  G+  
Sbjct: 224 ALQMGTSHELGQNFAKAFHTQYLSKDGRQELVWQTSWGT-STRMVGGLIMSHGDDSGLRV 282

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLG 399
           P  +AP +  ++ +K  D V     E I  RL   G  V  DD  +   G +    +L G
Sbjct: 283 PPRLAPVQAVVLAVKDDDAVIAKVRE-IGDRLKAAGVRVQVDDRTDVPFGRRAVDWELKG 341

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            P+++ VG + + +    +  R+ G +  + + E+
Sbjct: 342 VPVRIEVGPRDLENGTAMLARRIPGGKAPVRIGEI 376


>gi|188994826|ref|YP_001929078.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|238691475|sp|B2RJD6|SYT_PORG3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188594506|dbj|BAG33481.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 653

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 161/423 (38%), Gaps = 72/423 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +   +++ Q   G  ++  P + + +L++ SG Y  YG++  R  
Sbjct: 263 GLPLWLPRGTQLRLRLEDFLKQIQKHFGYQQVITPHIGNKNLYITSGHYAKYGQDSFRPI 322

Query: 98  D--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           +  +  +  +  P +     +IF+    SYR+LP    +    +R E      G+ R R 
Sbjct: 323 NTPQEGEEFMLKPMNCPHHCEIFKITPHSYRDLPIRLAEFGTVYRYEQSGELHGLTRVRG 382

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+      IF  L  K+   +              I L 
Sbjct: 383 FTQDDAHLF-CRPDQLKEEFCKVMDIIFIIFKALDFKNFEAQ--------------ISLR 427

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D    + +   +                       E W     A  +   EK   ++ E 
Sbjct: 428 DKVNREKYIGSE-----------------------ENWERAERAIIEACEEKGLPAVIEY 464

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G D K H  V +     G
Sbjct: 465 GEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFDLEYTGEDNKKHRPVMIHRAPFG 524

Query: 321 AM-RVVAAVIESSHDGKGIIW--PDSVAPFKIS-LINIKAHDQVCRDACEKIYARLSKVG 376
           +M R VA +IE +  GK  +W  PD V    +S   N  AH         ++   L++  
Sbjct: 525 SMERFVAVLIEHTA-GKFPLWLTPDQVVVLPVSERFNEYAH---------RVAKELNQRD 574

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  DD  E++G +    +L   P  +IVG     + +V ++ +  G   DM + ++  
Sbjct: 575 IRVQVDDRNEKVGRKIRDNELKRIPYMLIVGENESREEEVSVRKQGEG---DMGIMKITT 631

Query: 437 YAS 439
           +A 
Sbjct: 632 FAE 634


>gi|323968488|gb|EGB63894.1| threonyl-tRNA synthetase [Escherichia coli M863]
          Length = 642

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G   IW   +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAGFFPIW---LAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|294673346|ref|YP_003573962.1| threonine--tRNA ligase [Prevotella ruminicola 23]
 gi|294474289|gb|ADE83678.1| threonine--tRNA ligase [Prevotella ruminicola 23]
          Length = 648

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 158/430 (36%), Gaps = 72/430 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G +    +   +R+ Q R G  E+  P + S +L+V SG Y  YGK+  +
Sbjct: 263 GKGLPIWLPKGTELRLRLQDHLRKVQKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQ 322

Query: 96  L--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                  D+  +  P +     +IF    +SYR+LP    +    +R E      G+ R 
Sbjct: 323 PIHTPEEDEEYMLKPMNCPHHCEIFAWKPRSYRDLPLRIAEFGTVYRYEQSGELHGLTRV 382

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +L +   +G                     IV
Sbjct: 383 RSFTQDDAHLF-CRPDQVKQ-------EFLNVMDIIG---------------------IV 413

Query: 213 LADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           L   G   E Q+             +  D D  +  +   E W     A  +   EK   
Sbjct: 414 LTAFGFNFEAQISL----------RDPNDHDKYVGTD---EDWALAEKAIVEACQEKGLP 460

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLPMSATFKGAD---GKDHYVQMG 315
           +  E    +  G +        +G  +  GT    Y+LP     +  D    K   V + 
Sbjct: 461 AKVEYGEAAFYGPKLDFMIKDAIGRRWQLGTIQVDYNLPKRFNLEYTDEDNQKKTPVMIH 520

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               G+M    AV+     G   +W  PD VA   +S        +   D  +++  +  
Sbjct: 521 RAPFGSMERFCAVLIEHTSGHFPLWLTPDQVAILPLS--------EKYNDYAQEVAKKFD 572

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D   E++G +    +L   P  VIVG K  ++  V ++ +  G +   +++E
Sbjct: 573 MGGVRATVDMRNEKLGRKIRDNELKRIPYMVIVGEKEAAEGTVAVRPQGGGEQSVKTIQE 632

Query: 434 VINYASHRFS 443
            I+  + R +
Sbjct: 633 FIDEVNARVA 642


>gi|57239615|ref|YP_180751.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579605|ref|YP_197817.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|73919788|sp|Q5H9Z4|SYT_EHRRW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57161694|emb|CAH58624.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418231|emb|CAI27435.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 633

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 159/401 (39%), Gaps = 62/401 (15%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G I  H KG+  +     + ++N    IR++    G IE+  P L S  LW +SG +D +
Sbjct: 261 GQIFWHEKGLIIY-----RIIENY---IRKKLENNGYIEVKTPYLLSKTLWEQSGHWDKF 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M  L++ ++K +   P +      IF S I+SY++LP    +     R E      G
Sbjct: 313 REHMF-LSEIDNKVVAIKPMNCPCHVQIFNSKIRSYKDLPLRMAEFGTCHRYESSGALHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F   DA+ F  T +       K     + ++   G K I ++    P    G D
Sbjct: 372 LMRVRSFTQDDAHIF-CTEDQIIEEALKFCNLLMEVYEVFGFKDILVKFSDRPEKRAGSD 430

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  + D  E  +  S       + + N        LN ++      +      +  
Sbjct: 431 ------KIWDKAEEALKAS-------VKAAN--------LNYVLNPGDGAF------YGP 463

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI- 319
           KL  +L +          +G  +  GT    + LP  + A + G+DGK H+  M    I 
Sbjct: 464 KLEFTLKD---------AIGREWQCGTLQMDFVLPERLGAYYTGSDGKKHHPIMLHRAIL 514

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G +     ++   H GK  IW   +AP ++S++ I   D +      K  A    +  +V
Sbjct: 515 GTIERFIGILIEHHSGKLPIW---LAPVQLSILTI-TEDAIDYAISLKHKAMKQNIRAEV 570

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   E+I  +         P+  I+G K +    V I++
Sbjct: 571 --DITNEKINYKIRSHISKKIPVLWIIGKKEIETESVSIRY 609


>gi|34540737|ref|NP_905216.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|73919814|sp|Q7MVQ5|SYT_PORGI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34397051|gb|AAQ66115.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 653

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 161/423 (38%), Gaps = 72/423 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +   +++ Q   G  ++  P + + +L++ SG Y  YG++  R  
Sbjct: 263 GLPLWLPRGTQLRLRLEDFLKQIQKHFGYQQVITPHIGNKNLYITSGHYAKYGQDSFRPI 322

Query: 98  D--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           +  +  +  +  P +     +IF+    SYR+LP    +    +R E      G+ R R 
Sbjct: 323 NTPQEGEEFMLKPMNCPHHCEIFKITPHSYRDLPIRLAEFGTVYRYEQSGELHGLTRVRG 382

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+      IF  L  K+   +              I L 
Sbjct: 383 FTQDDAHLF-CRPDQLKEEFCKVMDIIFIIFKALDFKNFEAQ--------------ISLR 427

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D    + +   +                       E W     A  +   EK   ++ E 
Sbjct: 428 DKVNREKYIGSE-----------------------ENWERAERAIIEACEEKGLPAVIEY 464

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G D K H  V +     G
Sbjct: 465 GEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFDLEYTGEDNKKHRPVMIHRAPFG 524

Query: 321 AM-RVVAAVIESSHDGKGIIW--PDSVAPFKIS-LINIKAHDQVCRDACEKIYARLSKVG 376
           +M R VA +IE +  GK  +W  PD V    +S   N  AH         ++   L++  
Sbjct: 525 SMERFVAVLIEHTA-GKFPLWLTPDQVVVLPVSERFNEYAH---------RVAKELNQRD 574

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  DD  E++G +    +L   P  +IVG     + +V ++ +  G   DM + ++  
Sbjct: 575 IRVQVDDRNEKVGRKIRDNELKRIPYMLIVGENESREEEVSVRKQGEG---DMGIMKITT 631

Query: 437 YAS 439
           +A 
Sbjct: 632 FAE 634


>gi|121605747|ref|YP_983076.1| threonyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|166225475|sp|A1VR77|SYT_POLNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120594716|gb|ABM38155.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas
           naphthalenivorans CJ2]
          Length = 635

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 155/414 (37%), Gaps = 60/414 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I  HS G+  W P G      V   +R+     G  E+  P L    LW ++G +D Y  
Sbjct: 255 IDDHSPGLVFWHPKGWTVWQGVEQYMRKVYQNNGYQEVKGPQLLDKTLWEKTGHWDKYRD 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    +++ D A+   P +      IF+  IKSYR+LP  + +     R+E      G+
Sbjct: 315 NMFTTESEKRDFAL--KPMNCPGHILIFKQGIKSYRDLPLRYGEFGQCHRNEPTGGLHGI 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   D + F    +  K   +  + + L +++   G K+I  +  + P   IG D
Sbjct: 373 MRVRGFTQDDGHIFCTEEQILKECVD--YTTLLQKVYTDFGFKNIIYKVATRPEARIGSD 430

Query: 206 LSHEFIVLADTGETQVFCS--KDFMDFPI-PSENTDFDDIISL---NSIVEQWTAPYAAT 259
            S       D  E  +  S      +F I P E   +   I     ++I  QW      T
Sbjct: 431 ESW------DKAEHALIESLRASGCEFEISPGEGAFYGPKIEYTLKDAIGRQWQ---CGT 481

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYG 318
             V       S+PE                        + A + G DG  H  V +    
Sbjct: 482 IQVDF-----SMPER-----------------------LDAEYVGEDGARHRPVMLHRAI 513

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G++     ++   H G    W   +AP ++S++ I        +    +   L   G  
Sbjct: 514 VGSLERFIGILIEEHAGALPTW---LAPEQVSVLTITDSQA---EYARGVAKTLQNQGLR 567

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           V  D   E+I  +     L   P  ++VG K ++   V ++ R       MSLE
Sbjct: 568 VNLDLRNEKITYKIREHSLQKLPFILVVGDKEMAAGAVSVRARGNKDLGVMSLE 621


>gi|255526047|ref|ZP_05392970.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255510233|gb|EET86550.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 638

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 100/440 (22%), Positives = 173/440 (39%), Gaps = 58/440 (13%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE  +   
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMIIRNTLQNFWREMHSAAD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y KE +     +++     P +      ++++ I SY
Sbjct: 289 YDEIMTPVILNEKLWRQSGHWDHY-KENMYFTKIDNEDYAIKPMNCPGSILVYKNTIHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN--KMFVSYL 182
           R LP  + ++ L  R E      G+MR R F   DA+ F      +    N  K+   + 
Sbjct: 348 RELPLRYAEMGLAHRHEKSGALHGLMRVRCFTQDDAHMFLAKDNITDEIVNVIKLIDDFY 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++F       +  R E   +G D   E    A  G  +                    D 
Sbjct: 408 KVFGFEYFVELSTRPEDS-MGSDEDWE---AATNGLRKAL------------------DT 445

Query: 243 ISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP- 297
           I L   V +   A Y    D H   L D              +G  +  GT    + +P 
Sbjct: 446 IGLKYKVNEGDGAFYGPKIDFH---LRDC-------------IGRTWQCGTVQLDFQMPE 489

Query: 298 -MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ GADG+ H  V +     G++     ++   + G    +P  +AP ++ ++NI 
Sbjct: 490 RFDLTYIGADGEKHRPVMVHRVVFGSVERFIGILIEHYAGA---FPAWLAPVQVKIMNI- 545

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             DQ+  D   K+   L K    V  D   E+IG +   A L   P  +++G K + ++ 
Sbjct: 546 TDDQI--DYANKVAKELKKNKIRVEVDLRNEKIGYKIREAQLQKVPYMLVLGDKEMKENT 603

Query: 416 VEIKHRLTGIREDMSLEEVI 435
           V ++ R  G    M+L++ +
Sbjct: 604 VAVRSRKLGDLGAMALDQFV 623


>gi|187776737|ref|ZP_02993210.1| hypothetical protein CLOSPO_00252 [Clostridium sporogenes ATCC
           15579]
 gi|187775396|gb|EDU39198.1| hypothetical protein CLOSPO_00252 [Clostridium sporogenes ATCC
           15579]
          Length = 478

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/329 (19%), Positives = 131/329 (39%), Gaps = 66/329 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  + +   ++SY++LP  + Q    +++    RP    +R+ EFL ++ ++   
Sbjct: 114 PTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRP---FLRTAEFLWQEGHTIHA 170

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E ++    +M   Y +  H   + +IP                ++     E + F   
Sbjct: 171 TAEEARKETEQMLNVYAK--HVEDVLAIP----------------VIKGQKTEQEKFAGA 212

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                                       A Y   S +H+               + ++ G
Sbjct: 213 ---------------------------VATYTIESLMHD--------------GKALQTG 231

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              Y G  ++      +   +GK   V   S+G+   R++ A+I    D  G++ P  +A
Sbjct: 232 TSHYLGDHFASAFGIQYSDKEGKLQNVHQTSWGV-TTRMLGAIIMVHGDNSGLVVPPRIA 290

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ ++ +  H +   D   ++  R+ KV   V  DD  +  G +F   ++ G P+++ 
Sbjct: 291 PIQVVIVPVAQHKEGVLDKAYELKERVGKVA-RVKLDDTDKMPGWKFNEYEMKGVPIRLE 349

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           VG K +  ++V +  R T  +  +S++E+
Sbjct: 350 VGPKDIEKNQVVLVRRDTREKITVSMDEL 378


>gi|255009422|ref|ZP_05281548.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313147182|ref|ZP_07809375.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313135949|gb|EFR53309.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 497

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYVQN 400



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|295425303|ref|ZP_06818006.1| threonine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295065079|gb|EFG55984.1| threonine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 659

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 161/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 275 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 334

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      IF+ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 335 DMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 394

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 395 TLNDGHTF-VALDQVQDEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 439

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              TQ + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 440 PKNTQKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 496

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 497 ETMSTIQLD----FMLPDRFGL----TYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIY 548

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N  AH +      EK+   L+K G     D+  E++G +
Sbjct: 549 KGAFPTW---LAPIQAEIIPVNNDAHGEY----AEKVRQELAKRGFRAEVDNRNEKLGYK 601

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + +  + V ++   T      SL++ IN
Sbjct: 602 IRESQTQKVPYTLVLGDEEMKSNSVNVRRYGTDEEISKSLDDFIN 646


>gi|228906179|ref|ZP_04070068.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
 gi|228853588|gb|EEM98356.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
          Length = 502

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/393 (19%), Positives = 149/393 (37%), Gaps = 73/393 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 62  KGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 121

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 122 VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 178

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 179 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 212

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 213 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 249 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 298 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTP 356

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 357 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 389


>gi|156103089|ref|XP_001617237.1| bifunctional aminoacyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148806111|gb|EDL47510.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 765

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 125/332 (37%), Gaps = 63/332 (18%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M  +F   I+S+R+LP    Q     R E +     +R+REFL ++ +    T 
Sbjct: 377 PTSETIMYSVFSKWIRSHRDLPLKLNQWNTVVRWEFKQPTPFIRTREFLWQEGH----TA 432

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++    KM    L ++ R   + + +    G                           
Sbjct: 433 HKNEEEAVKMVFDILDLYRRWYEECLAVPIIKG--------------------------- 465

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               I SE   F              A + +T++         + EN R     I+    
Sbjct: 466 ----IKSEGEKFGG------------ANFTSTAEAF-------ISENGR----AIQAATS 498

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            Y GT ++      F+  +    YV   S+G    R +  +I +  D KG++ P  VA F
Sbjct: 499 HYLGTNFAKMFKIEFEDENETKQYVHQTSWGC-TTRSIGIMIMTHGDDKGLVLPPKVAKF 557

Query: 348 KISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQ 403
           K+ ++ I      + V  + C+ I   L     +  +DD      G +F   +L G P++
Sbjct: 558 KVVIVPILYKNTDENVIFNYCKDIEKVLKSAQINCIFDDRDLYSPGYKFNHWELRGVPIR 617

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           + VG K + ++      R T  + ++  E V+
Sbjct: 618 IEVGPKDIQNNSCLCVRRDTNEKFNVKKESVL 649


>gi|317471035|ref|ZP_07930410.1| prolyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316901476|gb|EFV23415.1| prolyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 160/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++  +   TG   +++P  +  + L  E    + +  E+  
Sbjct: 38  KGCMILRPNGYAIWENIQKVMDAKFKETGVENVAMPMFIPESLLEREKDHVEGFAPEVAW 97

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    +K +       PT E +  D + + I+SYR+LP  + Q    +++    RP    
Sbjct: 98  VTHGGNKKLEERLCVRPTSETLFCDFYSNIIQSYRDLPKLYNQWVSVVRWEKSTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EF  ++ ++   T + ++    +M   Y                            
Sbjct: 155 LRTSEFYWQEGHTAHATADEAEERTVQMLNMY---------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
               AD      FC + ++  P+   + T+ +     N       A Y   + +H+ K  
Sbjct: 187 ----AD------FCEQ-YLAIPVVKGQKTEKEKFAGAN-------ATYTIEALMHDGKAL 228

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            S              G    FG  ++      +   + K  YV   S+G+ + R++ A+
Sbjct: 229 QS--------------GTSHNFGDGFAKAFDIQYTDKNNKLQYVHQTSWGM-STRIIGAI 273

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  +AP +  ++ I    +   +  E+I  RLSK    V  DD  +  
Sbjct: 274 IMVHGDDSGLVLPPKIAPVQTMIVPIMQKKEGVLEKAEEIRERLSK-NYKVKVDDSDKSP 332

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F+  ++ G P ++ +G K +  ++  I  R T  +  +SL+E+
Sbjct: 333 GWKFSEQEVQGIPTRIEIGPKDIEKNQAVIVRRDTREKIFVSLDEI 378


>gi|270293969|ref|ZP_06200171.1| threonyl-tRNA synthetase [Bacteroides sp. D20]
 gi|270275436|gb|EFA21296.1| threonyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 646

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 158/432 (36%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +      I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S DF +F          D ++    +   E W     A  +   EK   
Sbjct: 410 --------VFESMDFENF---EAQISLRDKVNREKYIGSDENWEKAERAIIEACEEKGLK 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + GAD + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMVH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  PD VA   IS        +   D   ++   L
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYAHEVKQYL 569

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +       D+  E+IG +    ++   P  ++VG K   + +V ++ +  G +  M  E
Sbjct: 570 KRYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAENKEVAVRKQGEGDKGTMKFE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKKMNEEVQN 641


>gi|284929344|ref|YP_003421866.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [cyanobacterium
           UCYN-A]
 gi|284809788|gb|ADB95485.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [cyanobacterium
           UCYN-A]
          Length = 608

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 160/402 (39%), Gaps = 54/402 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +REEQ + G + +  P +   DL+  SG + +Y ++M  L 
Sbjct: 222 GLPLWTPKGTIIRSVLENFLREEQLKRGYLPVVTPHIGKVDLFKTSGHWQNYKEDMFPLM 281

Query: 98  DRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             N+ A       +  P +      I++S +KSYR+LP    +    +R E      G+ 
Sbjct: 282 SDNEVARGEEIGFVLKPMNCPFHIQIYKSDLKSYRDLPVRLAEFGTVYRYEKSGELGGLT 341

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F + D++ F +TP+     +  +    L +F  L LK+   R              
Sbjct: 342 RVRGFTVDDSHLF-VTPDQLDDEFLNVVNLILSVFENLQLKNFKAR-------------- 386

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS---IVEQWTAPYAATSDVHNEKL 267
           +   D    +   S +  +    S+N  +  +  LN      E   A Y    D   +  
Sbjct: 387 LSFRDPSSNKYIGSDEVWE---KSQNAIYRAVKMLNIDYFEAEGEAAFYGPKLDFIFQDA 443

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRV 324
            D          R  ++G +      Y+LP   +  + G  G  H  + +     G++  
Sbjct: 444 LD----------REWQLGTV---QVDYNLPERFNLEYIGEKGDKHRPIMIHRAPFGSLER 490

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR--LSKVGCDVFWD 382
           +  ++   + G   +W   ++P ++ ++ +     +  D  + +     +SK+  +V  D
Sbjct: 491 LIGILIEEYVGDFPLW---LSPVQVRILPV---SDLYLDYAKGVMQTMLMSKIRAEV--D 542

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             GE++G      +    P+  I+GSK +  + + I+ R +G
Sbjct: 543 TSGERLGKMIRKGEKEKIPVMAIIGSKEMETNSLNIRTRKSG 584


>gi|313678253|ref|YP_004055993.1| proline--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950316|gb|ADR24911.1| proline--tRNA ligase [Mycoplasma bovis PG45]
          Length = 478

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y    +S     +FK    +D +V   S+G+ + R++ A+I +  D +GI
Sbjct: 221 GKALQAGTSHYLAQNFSKKFEISFKNDKNEDEFVYQTSWGV-STRLLGAIIMTHGDNRGI 279

Query: 339 IWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P  VAP ++ ++ + A+ Q    D C+++  +L +    V  D   +  G + + +++
Sbjct: 280 IIPPKVAPVQVDILELFANKQPRVHDFCQELVKQLER-KFRVRLDSTDKSPGYKASNSEI 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G PL++ VG K + +  V I  R T  +  + + EV
Sbjct: 339 QGVPLRIEVGPKDLENKTVTIVRRDTLEKTIVDISEV 375


>gi|288801328|ref|ZP_06406782.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331711|gb|EFC70195.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 654

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 150/419 (35%), Gaps = 65/419 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R+ Q R G  E+  P L   +L+V SG Y  Y K+  R 
Sbjct: 263 KGMPIWLPKGTELRLRLQDMLRKIQKRFGYQEVMCPVLGGKNLYVTSGHYAHYSKDAFRP 322

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +     ++F    +SY++LP    +    +R E      G+ R R
Sbjct: 323 ITTPEEGEEYMLKPMNCPHHCEVFAWKPRSYKDLPLRISEFGNVYRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   PE  K+ + ++      +      K+   +              I L
Sbjct: 383 AFTQDDAHIF-CRPEQVKNEFLRVMDIIQAVLKIFDFKNFEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  D   EK   +  E
Sbjct: 428 RDPNNKEKYIGSD-----------------------EAWHEAEQAIIDACKEKGLTAKSE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLPMSATFKGAD---GKDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP     +  D    K   V +     
Sbjct: 465 LGEAAFYGPKLDFMIKDAIGRRWQLGTIQVDYNLPQRFKLEYTDEDNQKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D   ++       G 
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAREVARFFDNNGV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M+ +E ++
Sbjct: 577 RATIDDRNEKIGRKIRDNELKRVPYMVIVGEKESAEGLVSMRKQGGGEQATMTQQEFVD 635


>gi|160889627|ref|ZP_02070630.1| hypothetical protein BACUNI_02053 [Bacteroides uniformis ATCC 8492]
 gi|317479178|ref|ZP_07938315.1| threonyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860619|gb|EDO54050.1| hypothetical protein BACUNI_02053 [Bacteroides uniformis ATCC 8492]
 gi|316904666|gb|EFV26483.1| threonyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 646

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 158/432 (36%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRIRLQDFLRRIQARYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +      I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S DF +F          D ++    +   E W     A  +   EK   
Sbjct: 410 --------VFESMDFENF---EAQISLRDKVNREKYIGSDENWEKAERAIIEACEEKGLK 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + GAD + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMVH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  PD VA   IS        +   D   ++   L
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYAHEVKQYL 569

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +       D+  E+IG +    ++   P  ++VG K   + +V ++ +  G +  M  E
Sbjct: 570 KRYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAENKEVAVRKQGEGDKGTMKFE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKKMNEEVQN 641


>gi|218134037|ref|ZP_03462841.1| hypothetical protein BACPEC_01927 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991412|gb|EEC57418.1| hypothetical protein BACPEC_01927 [Bacteroides pectinophilus ATCC
           43243]
          Length = 585

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 162/405 (40%), Gaps = 60/405 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  +LP G      +   I++++ + G + +  P + + +L+  SG +D Y + M  
Sbjct: 200 GRGLPMFLPKGYVIWQELENYIKDKERKLGYLHVMTPCIGTVNLYKTSGHWDHYKENMFP 259

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             D + ++ +  P +      I+ + + SY++LP    +I   FR E      G+ R R 
Sbjct: 260 AMDVDGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIGEIAHDFRYESSGTLKGIERGRH 319

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F +TPE  +  + ++                           DL   F    
Sbjct: 320 FCQNDAHIF-VTPEQIEDEFKRVV--------------------------DLI--FSTYK 350

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D G T   C     D   P++   + D        E W     A   V N+   +   E 
Sbjct: 351 DFGITDYRCVLSLRD---PADKVKYHD------DDEMWNKAEDALRTVLNDLGIEYTEEI 401

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
              +  G +        VG+ +   T    + LP   + T+   DG K   V +    +G
Sbjct: 402 GEAAFYGPKLDVNVKPAVGNEYTLSTCQLDFCLPAKFNLTYIDKDGEKKTPVVLHRAILG 461

Query: 321 AM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           ++ R +A ++E +   KG + P  +AP ++ ++ +K  ++   +   +I + L +    V
Sbjct: 462 SLDRFMAYILEET---KGNL-PTWLAPVQVRVMPVKTDNEELMEYAHEICSALEEKNVRV 517

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             DD GE++G +     +   P  +++G  F       + +RL G
Sbjct: 518 ELDDRGEKLGYRMREGQIQKVPYLLVIG--FNEKEDRTVSYRLHG 560


>gi|189461379|ref|ZP_03010164.1| hypothetical protein BACCOP_02034 [Bacteroides coprocola DSM 17136]
 gi|189431908|gb|EDV00893.1| hypothetical protein BACCOP_02034 [Bacteroides coprocola DSM 17136]
          Length = 496

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I  +L ++G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVTKLREMGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +EI  R T  +E  S + +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCDGIEEYVKN 400



 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++   +++ I SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    KM   Y
Sbjct: 173 WQEGHTAHATREEAEAEAQKMLHVY 197


>gi|23098021|ref|NP_691487.1| prolyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
 gi|81846123|sp|Q8ESQ5|SYP_OCEIH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22776245|dbj|BAC12522.1| prolyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
          Length = 478

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   +FGT ++      +   DGK  +V   S+G+ + R++ A+I    D +G+
Sbjct: 226 GKALQSGTSHHFGTGFAEAFDINYLDKDGKSQFVHQTSWGL-STRIMGALIMVHGDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADL 397
           + P  +AP +  ++ I  H +   D   ++  +L+KV   D+  D   +  G +F   ++
Sbjct: 285 VVPPKIAPTQAMIVPIAQHKEGVLDKAYELRDKLAKVARVDI--DGSDKMPGWKFNEYEM 342

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G P++V +G K +   +V +  R TG +E + + EV
Sbjct: 343 KGIPVRVEMGPKDIEKEQVVLVRRDTGEKEFVPVAEV 379



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D + ++I SYR+LP  + Q    +++    RP    +RS EF  ++ ++   
Sbjct: 115 PTSEVLFCDYYSNNIHSYRDLPKLYNQWGNVVRWEKTTRP---FLRSSEFHWQEGHTAHA 171

Query: 166 TPEGSKHSYNKMFVSYLRI 184
           T E +    N+M  +Y ++
Sbjct: 172 TDEEATEETNRMLETYAKL 190


>gi|229828744|ref|ZP_04454813.1| hypothetical protein GCWU000342_00810 [Shuttleworthia satelles DSM
           14600]
 gi|229793338|gb|EEP29452.1| hypothetical protein GCWU000342_00810 [Shuttleworthia satelles DSM
           14600]
          Length = 597

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 164/414 (39%), Gaps = 42/414 (10%)

Query: 16  RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           R+A+   HK +   L   M H+ + G+  WLP G K  + +    R    R   +E++ P
Sbjct: 177 REAKERDHKKLGPALELFMFHESAPGMPYWLPRGWKLFNALLDYWRSVHERHNYLEIAAP 236

Query: 73  TLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLP 129
            + +  LW  SG +  Y + M  +  ++ D++  Y   P +       +++ ++SYR+LP
Sbjct: 237 VINNQKLWATSGHWGHYKENMFIIPGEKEDESDYYAAKPMNCPNAIMFYKNGLRSYRDLP 296

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           F   Q+ +  R E      G+ R + F   DA+      + +    + M ++   I+   
Sbjct: 297 FRVSQVDVIHRKEKSGELNGLFRVQMFRQDDAHILVTEDQIASEIADIMSIAD-EIYSTF 355

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GL     RAE      D   + I   D  E ++   ++ +D      N D         +
Sbjct: 356 GLS---FRAELSTRPDDFMGD-IATWDKAEAEL---REILDNMYGEGNYD---------V 399

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   ++ D+L    ++    ++      FG KY+          DG 
Sbjct: 400 NEGDGAFYGPKIDL---QMKDALGREWQMGTIQLDFQLPLNFGLKYA--------AQDGS 448

Query: 309 DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +    +    I G+M     ++  +  G    W   V+P+++ ++ I+          EK
Sbjct: 449 EKQPVLIHRAIFGSMERFIGILIENFKGSFPFW---VSPYQVGIVPIRTSHNAY---AEK 502

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           I   L  +G  V  D   + +  +      L  P  +++G K V +  V +  R
Sbjct: 503 IQEELRSMGIRVEADYADKNMNEKIKRFRTLRDPYTLVIGDKEVENGTVSVTVR 556


>gi|254466098|ref|ZP_05079509.1| threonyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206687006|gb|EDZ47488.1| threonyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 648

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 145/403 (35%), Gaps = 58/403 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    +   +R +Q + G +E++ P +    LW  SG ++ Y +
Sbjct: 260 MQEEAPGQIFWHPNGWKVYTTLQDYMRRQQEKGGYVEVNTPQVVDRRLWEASGHWEKYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   DA+ F    E    +  K F+ +L  I+  LG +   ++    P   
Sbjct: 380 LHGIMRVRGFTQDDAHIF--CAEDQIEAETKKFIDFLSEIYKDLGFEKFSVKFSDRPEKR 437

Query: 205 DLSHEFIVLADTGETQVF----CSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYA 257
             S E    ++           C+ D      P E   +    + +  ++I   W     
Sbjct: 438 SGSDEVWDKSEAALKAATEAAGCAYDLN----PGEGAFYGPKLEFVLTDAIGRDWQCGTL 493

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGS 316
               V        LPE                        + AT+ GADG  H  V +  
Sbjct: 494 QVDFV--------LPER-----------------------LDATYIGADGAKHRPVMLHR 522

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G+      ++   H GK   W   +AP ++ + +I +         +++ A L K G
Sbjct: 523 ATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITSDADAY---VQEVVAELKKAG 576

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                D   E+I  +     +   P+ + VG + V +  V ++
Sbjct: 577 VRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTVSVR 619


>gi|288869805|ref|ZP_05976398.2| proline--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|288860320|gb|EFC92618.1| proline--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 469

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 72/389 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  W+P G +       +I+E  +R    E+  P L   A+L  E      +  E+  
Sbjct: 26  KGMAVWMPYGFQIRKYTTNLIKEVYDRDHE-EVLFPLLVPEAELAKEGLHVKGFEDEVYW 84

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      + ++ +   PT E  +  ++   I+S+ +LP  +YQI   FR E +    ++R
Sbjct: 85  VTHGGKTQLNEKLALRPTSETSIYPMYSLWIRSHIDLPLKYYQIVNTFRYETKHTRPLIR 144

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++   + E +     +   +Y  IF  LG   IP      P         
Sbjct: 145 VREITTFKEAHTAHASKEEADIQVQEHIENYKEIFDTLG---IPYTLTKRP--------- 192

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP       FD I                            
Sbjct: 193 ---------------EWDKFPGADYTMAFDAI---------------------------- 209

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K      +++G I   G  ++     TF+  DG+   V     G+   RV+A+ I 
Sbjct: 210 MPDGKT-----LQIGTIHNLGQTFAKTFDITFEDKDGEHKLVYQTCAGLSD-RVIASAIG 263

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D KG+  P  ++P +I++I I   K  ++V    CE++       G  V  D+   +
Sbjct: 264 IHGDEKGLRLPPEISPKQITIIPILFKKGKEEVLA-KCEELKKEFEAAGLRVNIDNRDIR 322

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            G +F   +L G P+++ +G + + ++K 
Sbjct: 323 PGKKFYDWELKGTPIKLELGPRDLENNKT 351


>gi|298385691|ref|ZP_06995249.1| proline--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298261832|gb|EFI04698.1| proline--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 497

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETY 397



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|291294868|ref|YP_003506266.1| prolyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290469827|gb|ADD27246.1| prolyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 477

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 5/159 (3%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y G  ++      F+  D ++ YV   S+G    RVV A++ +  D KG+I P  +AP +
Sbjct: 231 YLGQNFARAFDIQFQDKDQQNKYVHTTSWGF-TTRVVGALVMTHGDDKGLILPPRLAPIQ 289

Query: 349 ISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
           + ++ I   +  +    A E++Y  L   G  V  DD  +   G +F   +L G PL++ 
Sbjct: 290 VVIVPIYKAETREAVLPAAERLYQELKAAGIRVHLDDRDQYSPGYKFNEWELKGVPLRLE 349

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G + V      +  RL G +E + + E++     R   
Sbjct: 350 LGPRDVEAGTAVLASRLGG-KETLQISELLGLLPARLEQ 387


>gi|289803037|ref|ZP_06533666.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 105

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 341 PDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           PD++APF+++++ +  H     ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G
Sbjct: 1   PDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIG 60

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            P  +++G + + +  +E K+R +G +  +   ++++Y
Sbjct: 61  IPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIVDY 98


>gi|29346339|ref|NP_809842.1| prolyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|81445136|sp|Q8A988|SYP_BACTN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29338234|gb|AAO76036.1| prolyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 497

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETY 397



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|304384417|ref|ZP_07366823.1| proline--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304334515|gb|EFM00802.1| proline--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 493

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I I  + +      E+   +   L K+G  V  DD   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVVIPIARNAEQLSAIDERLRPVIEGLRKLGISVKLDDADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G + + +  +E+  R T  +E + +E ++++
Sbjct: 355 YELKGVPVRLVMGGRDLENGTIELMRRDTLEKETLPIEGIVSH 397


>gi|157964288|ref|YP_001499112.1| threonyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844064|gb|ABV84565.1| Threonyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 651

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + +   RD      KL     + H  + ++G+  W   G    + +   IR++  +
Sbjct: 247 YLLMLEEAEKRD----HRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG +  +  +M  L + +DK +   P +      IF+  IK
Sbjct: 303 NGYTEVKTPVLVDKSLWEVSGHWAKFRDDMFVL-ETDDKTLALKPMNCPCHVQIFKQGIK 361

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F
Sbjct: 362 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF 402


>gi|303238788|ref|ZP_07325320.1| prolyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593667|gb|EFL63383.1| prolyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 481

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 130/329 (39%), Gaps = 65/329 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D + + I+SYR+LP  + Q    +++    RP    +R+ EFL ++ ++   
Sbjct: 116 PTSETLFCDHYSNIIQSYRDLPKLYNQWCSVVRWEKTTRP---FLRTVEFLWQEGHTAHA 172

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E ++    KM   Y                                AD      FC K
Sbjct: 173 TAEDAQEETIKMLNVY--------------------------------AD------FCEK 194

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                 I  + TD +             A +   S +H+ K   S              G
Sbjct: 195 VLAIPVIKGQKTDKEKFAGAK-------ATFTIESLMHDGKALQS--------------G 233

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               FG  ++      +   + +  YV   S+G+ + R++  +I    D  G++ P  +A
Sbjct: 234 TSHNFGDGFAQAFGIQYTDQNNQLQYVHQTSWGV-STRLIGGIIMVHGDDNGLVLPPKIA 292

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ +I +  H +   +    I  RL+  G  V  DD  +  G +++  ++ G P+++ 
Sbjct: 293 PIQVVVIPVSQHKEGVLEKAYAIRDRLAAKGIRVKIDDSDKMPGWKYSEYEMKGVPIRLE 352

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K +  ++  +  R++  +  +SL+E+
Sbjct: 353 IGPKDIEKNQAVLVTRVSREKLFISLDEL 381


>gi|148642347|ref|YP_001272860.1| prolyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|222444465|ref|ZP_03606980.1| hypothetical protein METSMIALI_00076 [Methanobrevibacter smithii
           DSM 2375]
 gi|172048060|sp|A5UJW4|SYP_METS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148551364|gb|ABQ86492.1| prolyl-tRNA synthetase, ProS [Methanobrevibacter smithii ATCC
           35061]
 gi|222434030|gb|EEE41195.1| hypothetical protein METSMIALI_00076 [Methanobrevibacter smithii
           DSM 2375]
          Length = 469

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 72/389 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  W+P G +       +I+E  +R    E+  P L   A+L  E      +  E+  
Sbjct: 26  KGMAVWMPYGFQIRKYTTNLIKEVYDRDHE-EVLFPLLVPEAELAKEGLHVKGFEDEVYW 84

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      + ++ +   PT E  +  ++   I+S+ +LP  +YQI   FR E +    ++R
Sbjct: 85  VTHGGKTQLNEKLALRPTSETSIYPMYSLWIRSHIDLPLKYYQIVNTFRYETKHTRPLIR 144

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE    K+A++   + E +     +   +Y  IF  LG   IP      P         
Sbjct: 145 VREITTFKEAHTAHASKEEADIQVQEHIENYKEIFDTLG---IPYTLTKRP--------- 192

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                          ++  FP       FD I                            
Sbjct: 193 ---------------EWDKFPGADYTMAFDAI---------------------------- 209

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K      +++G I   G  ++     TF+  DG+   V     G+   RV+A+ I 
Sbjct: 210 MPDGKT-----LQIGTIHNLGQTFAKTFDITFEDKDGEHKLVYQTCAGLSD-RVIASAIG 263

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D KG+  P  ++P +I++I I   K  ++V    CE++       G  V  D+   +
Sbjct: 264 IHGDEKGLRLPPEISPKQITIIPILFKKGKEEVLA-KCEELKKEFEAAGLRVNIDNRDIR 322

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            G +F   +L G P+++ +G + + ++K 
Sbjct: 323 PGKKFYDWELKGTPIKLELGPRDLENNKT 351


>gi|322371434|ref|ZP_08045983.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320548966|gb|EFW90631.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 645

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 3/163 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +  HS G  ++ P G      +   +RE+    G  E+  P L   +LW +SG YD + +
Sbjct: 259 VPDHSPGCVNFHPNGMAIRRELEEYVREKNAELGYEEVKTPELNHTELWKKSGHYDHFKE 318

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           E    A ++N       P +      I+    +SYR+LP  F +  + +R+E      G+
Sbjct: 319 EGEMFAWEQNGHEYGLKPMNCANHAHIYDDQRRSYRDLPLRFSEFGMCYRNEQSGELSGM 378

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +R R F   D ++F + PEG +    +       ++   GL +
Sbjct: 379 LRVRGFTQDDGHAF-VRPEGIREEIARTLSVIDGMYEAFGLDA 420


>gi|218130015|ref|ZP_03458819.1| hypothetical protein BACEGG_01598 [Bacteroides eggerthii DSM 20697]
 gi|217987818|gb|EEC54144.1| hypothetical protein BACEGG_01598 [Bacteroides eggerthii DSM 20697]
          Length = 646

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 157/428 (36%), Gaps = 67/428 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  + 
Sbjct: 261 KGLPMWLPKGAALRIRLQEFLRRIQARYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQP 320

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      I+++  +SY++LP    +     R E      G+ R R
Sbjct: 321 IHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + ++      +F  +  ++   +              I L
Sbjct: 381 SFTQDDAHIF-CRPDQVKDEFLRVMDIISIVFQSMHFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK   +  E
Sbjct: 426 RDKVNREKYIGSD-----------------------ENWEKAEQAIIEACEEKGLKAKVE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + GAD + H  V +     
Sbjct: 463 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMIHRAPF 522

Query: 320 GAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G+M R VA +IE +  GK  +W  PD VA   IS        +   D  +++   L +  
Sbjct: 523 GSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYAQEVKDYLKRYD 573

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D+  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  EE   
Sbjct: 574 VRAIVDERNEKIGRKIRDNEMKRIPYMLIVGEKEAENREVSVRKQGEGDQGTMKFEEFAK 633

Query: 437 YASHRFSN 444
             +    N
Sbjct: 634 KVNEEVQN 641


>gi|189501972|ref|YP_001957689.1| threonyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497413|gb|ACE05960.1| hypothetical protein Aasi_0559 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 644

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/419 (20%), Positives = 158/419 (37%), Gaps = 67/419 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G    + +   +R  Q + G   +  P +   +L++ SG YD YG++  +  
Sbjct: 266 GLPLWLPRGTVLREQLEQFLRRAQVKAGYQPVVTPHIGHKELYMTSGHYDKYGEDSFQPI 325

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 +     P +     +I++   +SYR+LP    +    +R E      G++R+R 
Sbjct: 326 RTPHEGEEFFLKPMNCPHHCEIYKHEPRSYRDLPVRLAEFGTVYRYEQHGELHGLVRTRG 385

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+                      IF R                  +  EF  + 
Sbjct: 386 FTQDDAH----------------------IFCR---------------NDQVREEFAKVI 408

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFDSL 271
           D   T VF +  F D+   +    F D   L+  +   E W     A  +V   +  ++ 
Sbjct: 409 DL-VTYVFSALGFSDY---TARLSFRDPEQLHKYIGDQEDWDKAEEAIEEVAKLRKLNTT 464

Query: 272 PENKRVSARGIE--------VGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSY 317
                 +  G +        +G  +  GT    Y LP+    ++ GAD K H  V +   
Sbjct: 465 KALGEAAFYGPKLDFMVKDALGRNWQLGTVQLDYQLPVRFDLSYTGADNKKHRPVMIHRA 524

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G++    A++     GK  +W   +AP +++++ I    +      E++   L     
Sbjct: 525 PFGSLERFIAILLEHTAGKLPLW---LAPEQVAILPI---SEKFAAYAEEVNQNLRNKDI 578

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             F D   E+IG +   A+L   P   I+G K   +  V ++ +  G +    +++++ 
Sbjct: 579 RCFIDHRDEKIGKKIREAELSKIPYMFIIGEKEQLERTVSVRKQGAGDQGSFPIDKLVQ 637


>gi|257869801|ref|ZP_05649454.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803965|gb|EEV32787.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 477

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 83/173 (47%), Gaps = 3/173 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++     T+   + K  Y    S+G+ + R++ A+I +  D  G+
Sbjct: 214 GKAVQAGTSHYMGTKFAEAFDITYLSKENKHTYAHTTSWGV-STRLLGALIMTHGDENGL 272

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           ++P ++AP +I L+ +     +    +  E+++A     G  V  DD     G +F   +
Sbjct: 273 VFPPTIAPTQIVLMPVGPWKKNPAILEKLEELFASFKAKGIRVRLDDSDNSPGYKFNEWE 332

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L G  L++  G + + +  V +K R    ++ ++ +++ ++   + +   P L
Sbjct: 333 LKGACLRIECGPRDLENGHVMVKVRDLAEKQTVAFDDLADFVDQQLAAMTPRL 385


>gi|253568239|ref|ZP_04845650.1| prolyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251842312|gb|EES70392.1| prolyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 497

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETY 397



 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T + ++    +M   Y
Sbjct: 173 WQEGHTAHATRKEAEEEAIRMLNVY 197


>gi|119505276|ref|ZP_01627351.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119458967|gb|EAW40067.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 639

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 160/434 (36%), Gaps = 72/434 (16%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD    + KL L      + + G+  W P G      + + +R++Q R  
Sbjct: 231 YLNRIAEAEKRDHRKIAKKLDLF--HTQEEAPGMVFWHPAGWTIYQVIESYMRKQQLRFD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG  D +   M  L D +D+     P +      +F   +KSY
Sbjct: 289 YEEIKTPQVVDISLWQRSGHADKFASGMFTL-DADDRQFAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    E    S    F+     
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF--CTEAQIQSEVATFI----- 400

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                               D+ HE  V AD G T+V               TD+D   +
Sbjct: 401 --------------------DMLHE--VYADFGFTEVIYRLSTRPAERVGSETDWDRAEA 438

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE------VGHIFYFGT---KYS 295
             +             D++    ++ LP         IE      +G ++  GT    +S
Sbjct: 439 ALAEA-------LDAKDLN----WEMLPGEGAFYGPKIEFSLKDCIGRVWQLGTIQVDFS 487

Query: 296 LP--MSATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           +P  + A +   DG        H   +GS+     R +  +IE  ++G+  +W  S    
Sbjct: 488 MPGRLDAQYVAEDGSRQVPVMLHRAVLGSF----ERFIGILIE-HYEGEFPLWLASQQAI 542

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
              + + +          +++ A L + G  V  D   E+IG +    +L   PL ++VG
Sbjct: 543 VAPITDKQGA------YAQQVAADLKEAGFRVGTDLRNEKIGFKIREHELAKVPLVLVVG 596

Query: 408 SKFVSDSKVEIKHR 421
            K ++   V ++ R
Sbjct: 597 DKEMAAGTVAVRGR 610


>gi|319653797|ref|ZP_08007892.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317394523|gb|EFV75266.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 479

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++      +   + K  +V   S+G  + R++ +VI    D +G+
Sbjct: 216 GKAVQAGTSHYLGTKFAEAFDIKYLNKENKHTFVHTTSWGT-STRLIGSVIMVHGDEQGL 274

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  +AP ++ LI +     +    +  ++I+A L   G  V  DD  +  G +F   +
Sbjct: 275 VLPPKIAPTQVVLIPVGPWKKNPAIMEKLDEIFAALKAEGIRVRLDDSDQSPGYKFNEWE 334

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L G P+++ +G + +  ++  +K R  G +  + LE +I+
Sbjct: 335 LKGVPVRIELGPRDLDQNQCLMKARDLGDKVAVPLEAIID 374



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++  ++   IKSYR+LP    Q    FR E +     +R+ EFL ++ ++  +  
Sbjct: 105 PTSETMIGHLYSDWIKSYRDLPVLINQWANVFRWE-KKTLPFIRTSEFLWQEGHTAHVDE 163

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           E ++    +M   Y  +    GL +IP+
Sbjct: 164 EDARKETMQMLSIYKEVVE--GLLAIPV 189


>gi|302063985|ref|ZP_07255526.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
          Length = 590

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 11/197 (5%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTQSESRDYAI-KPMNCPCHVQVFNQGLKSYRELPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   L ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTLDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGD 205
            I ++  + P   +G D
Sbjct: 414 DIELKLSTRPEKRVGSD 430


>gi|292670652|ref|ZP_06604078.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647679|gb|EFF65651.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 639

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 147/386 (38%), Gaps = 51/386 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    + +    RE   R G  E+S P + S  LW  SG +  Y +
Sbjct: 257 LHEEGPGFPFFHPNGMILRNALLEYWREVHRRYGYQEISTPVILSRKLWETSGHWFHYRE 316

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      ++RS + SYR+LP    ++ L  R EL     G+
Sbjct: 317 NMYTTEIDGEDYAI--KPMNCPGCMLVYRSQLHSYRDLPLRLAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F   DA+ F +TP+  +         +  ++   GL S      + P     S E
Sbjct: 375 FRVRNFTQDDAHLF-VTPDQIEGEIQHTINLFDEVYRTFGL-SYKAELSTRPEDSMGSDE 432

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              LA  G                 EN   D I++     E   A Y    D H   L D
Sbjct: 433 MWDLATEGLRNAL------------ENRGLDYIVN-----EGDGAFYGPKIDFH---LRD 472

Query: 270 SLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
           S             +G  +  GT     SLP     T+ G DG+ H  V +     G++ 
Sbjct: 473 S-------------IGRTWQCGTIQLDMSLPEKFDLTYIGEDGEKHRPVMLHRVVYGSIE 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++  ++ G   +W   +AP ++ ++ I           E +  R+  +G  V  DD
Sbjct: 520 RFIGILIENYAGAFPVW---MAPVQVRILPITERHTAY---AESLRGRMFDLGIRVEVDD 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSK 409
             E+ G +   + +   P  ++VG +
Sbjct: 574 RNEKTGYKIRESQVKKTPYTLVVGDQ 599


>gi|116492462|ref|YP_804197.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122266074|sp|Q03GB7|SYT_PEDPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116102612|gb|ABJ67755.1| Ser-tRNA(Thr) hydrolase [Pediococcus pentosaceus ATCC 25745]
          Length = 648

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 160/388 (41%), Gaps = 37/388 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G     ++   I +++ + G   +  P L + D +  SG +  Y ++M    
Sbjct: 263 GLPYWMPNGATIRRSIERYIIDKEVKHGYQHVYTPVLMNLDAYKTSGHWQHYREDMFPPM 322

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 323 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 382

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  +  + K+    + ++    +     R         LS+      D
Sbjct: 383 TLNDGHTF-VAPDQIQAEFKKVLQLMVEVYRDFNITDYTFR---------LSYR-----D 427

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+ +  E   A Y    DV  +    +L   
Sbjct: 428 PANTEKYFDDDEMWNKSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDVQTKT---ALGNE 484

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L     + GADG++H   M   G+ +   R  A +IE  
Sbjct: 485 ETLSTIQLD----FMLPKQFDL----HYVGADGEEHRPVMIHRGLVSTMERFTAYLIEMY 536

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++++I +K  D +     +K+   +      V  D   E++G + 
Sbjct: 537 ---KG-AFPTWLAPKQVTIIPVK--DDLHGAYADKLREEMVDKDIRVEVDHRNEKMGYKI 590

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             A     P  ++VG   + ++ V ++H
Sbjct: 591 REAQTQKIPYILVVGDNELENNSVSVRH 618


>gi|307545104|ref|YP_003897583.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307217128|emb|CBV42398.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 632

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 160/430 (37%), Gaps = 55/430 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H KL  +  + H  + + G+  W P G      V   +R
Sbjct: 226 KQLKAYLKRLEE----AEKRDHRKLARKLDLFHMQEEAPGMVFWHPRGWTLWQVVEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +     G  E+  P +    LW +SG +D+Y   M    +   +     P +      +F
Sbjct: 282 QVYKDGGYQEIRCPQVMDVSLWKKSGHWDNYADGMF-FTESEKREYALKPMNCPGHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S ++SYR LP  + +     R+E      G+MR R F   D + F  T E  +      
Sbjct: 341 NSGLRSYRELPVRYGEFGGCHRNEPSGALHGIMRVRAFTQDDGHVF-CTEEQIEPEVTSF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
               L+++   G + I ++    P   +G D   +    A  G  +  C  D+ + P   
Sbjct: 400 HRQALQVYRDFGFEDIAVKIALRPEKRLGDDAVWDRAEEALRGALRT-CDVDWDELPGEG 458

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                              A Y    + H   + D L    +V    ++          +
Sbjct: 459 -------------------AFYGPKIEYH---MKDCLGREWQVGTMQVD----------F 486

Query: 295 SLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +P  + A +   DG+    V +    +G+M     ++   + G   +W   +AP +  +
Sbjct: 487 MMPVRLGAQYVAEDGERRSPVMLHRAIVGSMERFIGILIEHYAGAMPLW---LAPQQAVV 543

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I       RD    +  RL K G  V  D   E+IG +     L   P  ++VG K V
Sbjct: 544 LTIT---DAQRDYATYLEQRLQKKGLRVKADLRNEKIGFKIREHTLQKVPYLLVVGDKEV 600

Query: 412 SDSKVEIKHR 421
               V ++ R
Sbjct: 601 EADSVAVRSR 610


>gi|303237224|ref|ZP_07323794.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482611|gb|EFL45636.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 649

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 153/430 (35%), Gaps = 85/430 (19%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G +    +  ++R+ Q      E+  P +   +L+V SG Y  YGK+  +
Sbjct: 262 GKGLPIWLPKGTQVRLRLQEVLRKLQRPYHYQEVITPGIGGKNLYVTSGHYAHYGKDAFQ 321

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +IF    +SY++LP    +    FR E      G+ R 
Sbjct: 322 PIQTPEEGEEYMLKPMNCPHHCEIFAHKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRV 381

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F + PE  K  +  +     ++F   G ++   +              I 
Sbjct: 382 RTFTQDDAHLF-VRPEQVKKEFEDVIDIIQKVFITFGFENYEAQ--------------IS 426

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D  + + +   D                       E W           +E+      
Sbjct: 427 LRDPDDKEKYIGSD-----------------------EIWE---------ESERAIKEAC 454

Query: 273 ENKRVSARGIEVGHIFYFGTK---------------------YSLP--MSATFKGADG-K 308
           E K + AR +E+G   ++G K                     Y+LP      +   D  K
Sbjct: 455 EEKGLKAR-VEIGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNTK 513

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACE 366
              V +     G++    AV+     G   +W  PD VA   IS        +      E
Sbjct: 514 QTPVMIHRAPFGSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNGYAE 565

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ A           DD  E+IG +    +L   P  VIVG + ++D  V ++ +  G +
Sbjct: 566 EVRAYFEANEVRAIVDDRNEKIGRKIRDNELKRVPYMVIVGEQEMADGLVSMRQQGGGEQ 625

Query: 427 EDMSLEEVIN 436
             M  E+ + 
Sbjct: 626 ATMPKEDFVK 635


>gi|43066|emb|CAA23560.1| unnamed protein product [Escherichia coli]
          Length = 642

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|324119204|gb|EGC13092.1| threonyl-tRNA synthetase [Escherichia coli E1167]
          Length = 642

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|256026433|ref|ZP_05440267.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289764445|ref|ZP_06523823.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289716000|gb|EFD80012.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 637

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 178/433 (41%), Gaps = 52/433 (12%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    + ++  G   +LP G    + +  + R+E  + G +++  P 
Sbjct: 236 EAEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLVDLWRKEHEKAGYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y +E +  ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNY-RENMYTSEIDEVEFAIKPMNCPGGVLAFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TP+  +                +G+ +
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEI-------------IGVVN 400

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           +  +  S   G     E+ +   T   +   S++  D    +     D +     I    
Sbjct: 401 LIDKFYSKLFG----FEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGD 456

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG 307
            A Y    D    K+ D+             +G ++  GT    ++LP     T+ G DG
Sbjct: 457 GAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFNLPERFDVTYIGEDG 500

Query: 308 KDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++   + G   +W   +AP ++ ++ I   +  C    +
Sbjct: 501 EKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVMTI---NDECVPYAK 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +I A+L K+G     DD  E IG +   A+     P+Q+I+G   V + +V I+   +  
Sbjct: 555 EIMAKLDKLGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNIRRFGSKD 614

Query: 426 REDMSLEEVINYA 438
           +   SL+E  NY 
Sbjct: 615 QFSKSLDEFYNYV 627


>gi|170768863|ref|ZP_02903316.1| threonyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170122411|gb|EDS91342.1| threonyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 642

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|254447322|ref|ZP_05060789.1| threonyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198263461|gb|EDY87739.1| threonyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 637

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/449 (21%), Positives = 174/449 (38%), Gaps = 69/449 (15%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    AE   H+ + ++  + H  + + G+  W   G +    V   IR+  
Sbjct: 229 KAHLTMLEE----AEKRDHRKLAKSLDLFHMQEEAPGMVFWHDKGWQIYVQVQDYIRQLL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW +SG +D +G +M+      ++     P +      I+   
Sbjct: 285 RQHDYQEVHTPQVVDRVLWEKSGHWDKFG-DMIFSTHSENRDYAVKPMNCPCHVQIYNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F+  DA+ F    E    S    F+ 
Sbjct: 344 LKSYRDLPLRMAEFGSCHRNEPSGTLHGLMRVRNFVQDDAHIF--CTEDQIQSEVSAFID 401

Query: 181 YL-RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGET--QVFCSKDFMDFPI-P 233
            + +++   G + + +   + P   +G D       L D  E   +V  +   +DF + P
Sbjct: 402 LVFQVYKDFGFEEVQVALSTRPEERVGED------ALWDKAENALEVALNNKDLDFTLQP 455

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT- 292
            E   +   I                       L D L             G ++  GT 
Sbjct: 456 GEGAFYGPKIEF--------------------ALKDCL-------------GRVWQCGTI 482

Query: 293 --KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              +S+P  + A +   DG +   V +    +G++     ++   H+G+  +W   +AP 
Sbjct: 483 QVDFSMPTRLEADYVAEDGSRKTPVMLHRAILGSLERFIGILIEEHEGRFPVW---LAPV 539

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +++NI        D  EK    L   G  V  D   E+IG +     L   P   +VG
Sbjct: 540 QAAILNITDKQA---DFVEKARQTLENQGLRVVSDLRNEKIGFKIREHTLQRVPYLFVVG 596

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            + V +  V ++ R       M+++E + 
Sbjct: 597 DREVENESVAVRTRSGEDLGTMTVDEAVQ 625


>gi|68487989|ref|XP_712153.1| hypothetical protein CaO19.6701 [Candida albicans SC5314]
 gi|68488040|ref|XP_712128.1| hypothetical protein CaO19.13993 [Candida albicans SC5314]
 gi|77023056|ref|XP_888972.1| hypothetical protein CaO19_6701 [Candida albicans SC5314]
 gi|46433496|gb|EAK92934.1| hypothetical protein CaO19.13993 [Candida albicans SC5314]
 gi|46433523|gb|EAK92960.1| hypothetical protein CaO19.6701 [Candida albicans SC5314]
 gi|76573785|dbj|BAE44869.1| hypothetical protein [Candida albicans]
          Length = 691

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 137/346 (39%), Gaps = 72/346 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 287 DEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 346

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT + + +   ++   Y  ++  L   ++P                +V     E +
Sbjct: 347 HTAHLTKDAAANEVLQILDYYAGVYEEL--LAVP----------------VVKGKKTENE 388

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   D+                   + VE + A                       + R
Sbjct: 389 KFAGGDY------------------TTTVEGFIA----------------------ATGR 408

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKG 337
           GI+ G   + GT +S   + + +  +G +    +    S+G+ + RV+  +I +  D KG
Sbjct: 409 GIQGGTSHHLGTNFSKMFNISVENPEGSEKPRIFAYQNSWGL-STRVIGVMIMTHSDNKG 467

Query: 338 IIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE--QI 388
           ++ P  +A ++  +I +        A  +   +  EKI   L   G  V   D  E    
Sbjct: 468 LVLPPRIAQYQAVVIPVGLTSKSTDAQRKEINEGAEKIEQSLRANGIRVT-GDYREIYNP 526

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +FA  +L G PL+   G K ++ ++V I  R  G +  + L+E+
Sbjct: 527 GWKFADWELKGVPLRFEFGPKDLAGNQVTIVRRNDGKKYTVKLDEL 572


>gi|317476770|ref|ZP_07936013.1| threonyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906945|gb|EFV28656.1| threonyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 646

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 157/428 (36%), Gaps = 67/428 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  + 
Sbjct: 261 KGLPMWLPKGAALRIRLQEFLRRIQARYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQP 320

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      I+++  +SY++LP    +     R E      G+ R R
Sbjct: 321 IHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + ++      +F  +  ++   +              I L
Sbjct: 381 SFTQDDAHIF-CRPDQVKDEFLRVMDIISIVFQSMHFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK   +  E
Sbjct: 426 RDKVNREKYIGSD-----------------------ENWEKAEQAIIEACEEKGLKAKVE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + GAD + H  V +     
Sbjct: 463 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMIHRAPF 522

Query: 320 GAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G+M R VA +IE +  GK  +W  PD VA   IS        +   D  +++   L +  
Sbjct: 523 GSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYAQEVKDYLKRYD 573

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D+  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  EE   
Sbjct: 574 VRAIVDERNEKIGRKIRDNEMKRIPYMLIVGEKEAENREVSVRKQGEGDQGTMKFEEFAK 633

Query: 437 YASHRFSN 444
             +    N
Sbjct: 634 KVNEEVQN 641


>gi|153870648|ref|ZP_02000004.1| threonyl-tRNA synthetase, class IIa [Beggiatoa sp. PS]
 gi|152072888|gb|EDN69998.1| threonyl-tRNA synthetase, class IIa [Beggiatoa sp. PS]
          Length = 390

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 143/372 (38%), Gaps = 70/372 (18%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P L    LW +SG +D +G +M      N +  +  P +      IF   +KSYR+
Sbjct: 46  EVHTPQLVDRSLWEKSGHWDKFGDDMFVTQSENREYAV-KPMNCPCHIQIFNQGLKSYRD 104

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    +     R+E      G+MR R F+  DA+ F  T +  +   +       +++ 
Sbjct: 105 LPLRLAEFGSCHRNEASGTLHGLMRIRGFVQDDAHIF-CTDDQIQQEVSDFIDLLFKVYT 163

Query: 187 RLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             G K+I ++  + P   +G D                                      
Sbjct: 164 DFGFKNILIKLSTRPEKRVGSD-------------------------------------- 185

Query: 244 SLNSIVEQW-TAPYAATSDVHNEKL-FDSLPENKRVSARGIE------VGHIFYFGT--- 292
                 E W  A  A    ++N+KL +D  P         IE      +  ++  GT   
Sbjct: 186 ------EVWDKAEKALELALNNKKLAWDLQPGEGAFYGPKIEFVLKDCLDRVWQCGTIQV 239

Query: 293 KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            +S+P  + AT+  ADG     V +    +G++     V+   + G   +W   +AP ++
Sbjct: 240 DFSMPDRLGATYIAADGSKQVPVMLHRAILGSLERFIGVLIEEYAGALPLW---LAPVQV 296

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++NI        D  ++I  +L K G  V  D   E+IG +     L   P  +I+G +
Sbjct: 297 VILNITDEHA---DYAKQIEVKLLKEGFRVESDLRNEKIGFKIREHTLQKIPYLLIIGGR 353

Query: 410 FVSDSKVEIKHR 421
            +   +V ++ R
Sbjct: 354 EIETQQVTVRLR 365


>gi|227885859|ref|ZP_04003664.1| threonine--tRNA ligase [Escherichia coli 83972]
 gi|300898493|ref|ZP_07116830.1| threonyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300917719|ref|ZP_07134368.1| threonyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300930805|ref|ZP_07146177.1| threonyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300951319|ref|ZP_07165163.1| threonyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300958608|ref|ZP_07170733.1| threonyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301050944|ref|ZP_07197793.1| threonyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|301647910|ref|ZP_07247687.1| threonyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|227837432|gb|EEJ47898.1| threonine--tRNA ligase [Escherichia coli 83972]
 gi|300297398|gb|EFJ53783.1| threonyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300314733|gb|EFJ64517.1| threonyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300357845|gb|EFJ73715.1| threonyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300415120|gb|EFJ98430.1| threonyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300449416|gb|EFK13036.1| threonyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300461363|gb|EFK24856.1| threonyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|301073967|gb|EFK88773.1| threonyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|312946320|gb|ADR27147.1| threonyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313649261|gb|EFS13695.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|315618916|gb|EFU99499.1| threonyl-tRNA synthetase [Escherichia coli 3431]
 gi|323169354|gb|EFZ55030.1| threonyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323186901|gb|EFZ72219.1| threonyl-tRNA synthetase [Escherichia coli RN587/1]
 gi|324007092|gb|EGB76311.1| threonyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|332090644|gb|EGI95739.1| threonyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332093917|gb|EGI98970.1| threonyl-tRNA synthetase [Shigella dysenteriae 155-74]
 gi|332759227|gb|EGJ89536.1| threonyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332762542|gb|EGJ92807.1| threonyl-tRNA synthetase [Shigella flexneri 4343-70]
 gi|332767218|gb|EGJ97413.1| threonyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333018198|gb|EGK37500.1| threonyl-tRNA synthetase [Shigella flexneri K-304]
          Length = 622

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 605


>gi|325570709|ref|ZP_08146435.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156555|gb|EGC68735.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 477

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++     T+   + K  +    S+G+ + R++ A+I +  D  G+
Sbjct: 214 GKAVQAGTSHYMGTKFAEAFDITYLTKENKHVHAHTTSWGV-STRLLGALIMTHGDENGL 272

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           ++P ++AP ++ L+ +     +    +  E++YA     G  V  DD     G +F   +
Sbjct: 273 VFPPTIAPTQVVLLPVGPWKKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGYKFNEWE 332

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L G  L++  G + +   KV +K R    ++ ++LE++  +         P L
Sbjct: 333 LKGACLRIECGPRDLEAGKVMVKVRDLADKQTVALEDLEAFVDQELQAMTPRL 385


>gi|313206166|ref|YP_004045343.1| prolyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312445482|gb|ADQ81837.1| prolyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|315023150|gb|EFT36163.1| prolyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
 gi|325336389|gb|ADZ12663.1| Prolyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 491

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 85/162 (52%), Gaps = 5/162 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F   +GK  Y    S+G+ + R++ A+I S  D  G++
Sbjct: 234 KALQAGTSHFLGQNFAEAFDVKFTNKEGKIEYAWATSWGV-STRLMGALIMSHSDDNGLV 292

Query: 340 WPDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P S+AP ++ ++ I K  +Q+ +  +   ++ ++L  +G  V +D+    + G +FA  
Sbjct: 293 LPPSLAPIQVVIVPIFKGEEQLKQIDEVAYELQSKLKALGISVKYDNRDTHKPGWKFAEY 352

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ G P+++ +G++ + +  VEI  R T  +E   L+ +  Y
Sbjct: 353 EMKGVPVRIAMGARDLENKTVEIARRDTLSKEVKPLDNIEVY 394



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ ++SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSEAIIWNTYKNWVQSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T E +     +M   Y
Sbjct: 174 HTAHATKEEAIAETEQMLNVY 194


>gi|71066652|ref|YP_265379.1| threonyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|123775558|sp|Q4FPW3|SYT_PSYA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71039637|gb|AAZ19945.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychrobacter
           arcticus 273-4]
          Length = 644

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 151/409 (36%), Gaps = 72/409 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW  SG + +Y  
Sbjct: 255 MQEQAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYEEIKTPQIVDRSLWERSGHWGNYAT 314

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M   + ++ D A+   P +      +F   +KSYR+LP    +     R+E      G+
Sbjct: 315 NMFTTSSEKRDYAV--KPMNCPCHVQVFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F   DA+ F  T    +          L ++   G  +I M+  + P   +G D 
Sbjct: 373 MRVRGFTQDDAHIF-CTQSQIQQEVADFIKLTLAVYEDFGFNNIIMKLSTRPEKRVGSDE 431

Query: 207 SHEFI--VLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           S +F    LAD            +D+  +P E   +   I  +                 
Sbjct: 432 SWDFAEKALADA------LDNSGLDWAYLPGEGAFYGPKIEFS----------------- 468

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-----MSATFKGADGKD------HYV 312
              L DSL             G ++  GT    P     + A F     +       H  
Sbjct: 469 ---LKDSL-------------GRVWQCGTIQVDPNMPERLDAEFVNEQNEREVPIMLHRA 512

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +GS+     R +  +IE ++ G   +W   +AP ++ ++NI        +ACE +   L
Sbjct: 513 ILGSF----ERFIGILIE-NYAGWMPVW---LAPQQVVVMNITDKQA---EACENVVNEL 561

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            K G     D   E+IG +     L   P  +++G K V    V ++ R
Sbjct: 562 KKSGLRAISDLRNEKIGFKIREKTLERIPYMLVLGDKEVESGSVNVRTR 610


>gi|332885366|gb|EGK05615.1| threonyl-tRNA synthetase [Dysgonomonas mossii DSM 22836]
          Length = 650

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 159/434 (36%), Gaps = 90/434 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +   +++ Q +    ++  P + S  L+V SG Y  YG++  + 
Sbjct: 261 KGLPLWLPRGTQLRLKLEDFLKKIQKKFEYQQVMTPHIGSKLLYVTSGHYAKYGQDSFQP 320

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I++   +SYR+LP    +    +R E      G+ R R
Sbjct: 321 IHTPEEGEEFLLKPMNCPHHCEIYKIVPRSYRDLPLRMAEFGTVYRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE  K  + K+      IF  L  ++   +              I L
Sbjct: 381 GFTQDDAHIF-CTPEQLKEEFLKVMDIVFIIFKALNFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                         W     A  +   EK    LP 
Sbjct: 426 RDPNNREKYIGSD-----------------------ANWEKAERAIIEACEEK---GLP- 458

Query: 274 NKRVSARGIEVGHIFYFGTK---------------------YSLP--MSATFKGADGKDH 310
                AR +E+G   ++G K                     Y+LP      + GAD + H
Sbjct: 459 -----AR-VELGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFELEYTGADNQKH 512

Query: 311 Y-VQMGSYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACE 366
             V +     G+M R +A +IE +  GK  +W  PD V    IS        +   D   
Sbjct: 513 RPVMIHRAPFGSMERFIAVLIEHTA-GKFPLWLAPDQVVILPIS--------EKFNDYAH 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++     + G     DD  E+IG +    +L   P  +IVG K     +V I+ +  G +
Sbjct: 564 RVSHYFKQQGISSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKEAESEEVSIRKQGDGDK 623

Query: 427 EDMSLEEVINYASH 440
             M     +N+A+ 
Sbjct: 624 GSMKF---VNFAAQ 634


>gi|293376513|ref|ZP_06622741.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292644739|gb|EFF62821.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 476

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 164/407 (40%), Gaps = 75/407 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+   + ++   TG   + +P L   + L  E+   + +  E+  
Sbjct: 36  KGCMIIRPYGYAIWENIQQYLDQKFKETGHENVYMPMLIPESLLQKEADHVEGFAPEVAW 95

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     ++  + ++  PT E +  D +   I+SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGNEKLSERLVVRPTSETLFCDHYSKIIQSYNDLPKKYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E ++     M  +Y ++                         
Sbjct: 153 LRTTEFLWQEGHTVHATAEEAEEETLLMLNTYAKM------------------------- 187

Query: 210 FIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                          ++F+  P+   + T+ +             A Y   S +H+ K  
Sbjct: 188 --------------CEEFLAIPVLKGQKTEKEKFAGAQ-------ATYTIESLMHDGKAL 226

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            S              G    FGT ++      +   + K  Y    S+G+   R++ A+
Sbjct: 227 QS--------------GTSHNFGTGFAKAFDIKYSDKNSKMQYAHQTSWGV-TTRLIGAI 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           I    D  G++ P  VAP ++ +I I AH + V   ACE +  RL+ V   V  D   + 
Sbjct: 272 IMVHGDSSGLVLPPRVAPTQVMIIPIAAHKEGVIEKACE-LQTRLASVA-RVKCDTSDKT 329

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +F+  ++ G P++V +G K + +++V +  R T  +  +SL+++
Sbjct: 330 PGWKFSEYEMKGIPVRVEIGPKDIENNQVVLVRRDTREKIIVSLDDL 376


>gi|193065767|ref|ZP_03046830.1| threonyl-tRNA synthetase [Escherichia coli E22]
 gi|194428543|ref|ZP_03061082.1| threonyl-tRNA synthetase [Escherichia coli B171]
 gi|218554286|ref|YP_002387199.1| threonyl-tRNA synthetase [Escherichia coli IAI1]
 gi|260844071|ref|YP_003221849.1| threonyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260855585|ref|YP_003229476.1| threonyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260868246|ref|YP_003234648.1| threonyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|293446093|ref|ZP_06662515.1| threonyl-tRNA synthetase [Escherichia coli B088]
 gi|331668404|ref|ZP_08369252.1| threonine--tRNA ligase [Escherichia coli TA271]
 gi|331677592|ref|ZP_08378267.1| threonine--tRNA ligase [Escherichia coli H591]
 gi|226701402|sp|B7M1C7|SYT_ECO8A RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|192926539|gb|EDV81170.1| threonyl-tRNA synthetase [Escherichia coli E22]
 gi|194413421|gb|EDX29704.1| threonyl-tRNA synthetase [Escherichia coli B171]
 gi|195182909|dbj|BAG66479.1| threonyl-tRNA synthetase [Escherichia coli O111:H-]
 gi|218361054|emb|CAQ98632.2| threonyl-tRNA synthetase [Escherichia coli IAI1]
 gi|257754234|dbj|BAI25736.1| threonyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257759218|dbj|BAI30715.1| threonyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257764602|dbj|BAI36097.1| threonyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|291322923|gb|EFE62351.1| threonyl-tRNA synthetase [Escherichia coli B088]
 gi|323153043|gb|EFZ39312.1| threonyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|331063598|gb|EGI35509.1| threonine--tRNA ligase [Escherichia coli TA271]
 gi|331074052|gb|EGI45372.1| threonine--tRNA ligase [Escherichia coli H591]
          Length = 642

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|300818358|ref|ZP_07098568.1| threonyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300821407|ref|ZP_07101554.1| threonyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300525910|gb|EFK46979.1| threonyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300528998|gb|EFK50060.1| threonyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|323158484|gb|EFZ44500.1| threonyl-tRNA synthetase [Escherichia coli E128010]
 gi|323175213|gb|EFZ60827.1| threonyl-tRNA synthetase [Escherichia coli LT-68]
 gi|323180497|gb|EFZ66042.1| threonyl-tRNA synthetase [Escherichia coli 1180]
 gi|323186265|gb|EFZ71617.1| threonyl-tRNA synthetase [Escherichia coli 1357]
          Length = 622

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 605


>gi|82543879|ref|YP_407826.1| threonyl-tRNA synthetase [Shigella boydii Sb227]
 gi|187734126|ref|YP_001880509.1| threonyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|123769450|sp|Q321L0|SYT_SHIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689503|sp|B2U397|SYT_SHIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81245290|gb|ABB65998.1| threonine tRNA synthetase [Shigella boydii Sb227]
 gi|187431118|gb|ACD10392.1| threonyl-tRNA synthetase [Shigella boydii CDC 3083-94]
          Length = 642

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|124486203|ref|YP_001030819.1| prolyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|152112928|sp|A2ST96|SYP_METLZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124363744|gb|ABN07552.1| prolyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 477

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 83/157 (52%), Gaps = 6/157 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G + + G  +S   + T++  +G+        +GI + R +AA+I    D KG+
Sbjct: 222 GRTLQIGTVHHLGDHFSTTYNITYEDVNGEQKLASQTCFGI-SERCIAAIIAVHGDDKGL 280

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           + P +VAP ++ +I I   K  D++   A EK+ + L   G  V  D    + G+++   
Sbjct: 281 VLPATVAPTQVVIIPIIVGKRGDEIMA-AVEKLESELKAAGLRVKTDARDMRPGAKYYHW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +L G PL+V +G + + ++++   +RL G++  +  E
Sbjct: 340 ELHGVPLRVELGPRDLDNNQLVCANRL-GVKTTIPRE 375



 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 4/123 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+Y W P G    ++   ++R   NR     +    +   +   E+     +  E+  +
Sbjct: 35  KGLYVWYPFGFALRNHTYTLLRSLLNRDHEETLFPLLIPETEFMKEAEHIKGFEDEVYWV 94

Query: 97  ADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   D  +   PT E  +  ++   ++S+ +LP   YQ+   FR E +    ++R 
Sbjct: 95  THGGLSPLDVKLALRPTSETAIYPMYALWVRSHADLPLKLYQVVNTFRYETKHTRPLIRL 154

Query: 153 REF 155
           RE 
Sbjct: 155 REI 157


>gi|320173198|gb|EFW48409.1| Threonyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|320185858|gb|EFW60609.1| Threonyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332096305|gb|EGJ01306.1| threonyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 622

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 605


>gi|332884684|gb|EGK04941.1| prolyl-tRNA synthetase [Dysgonomonas mossii DSM 22836]
          Length = 493

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 83/157 (52%), Gaps = 5/157 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F   +GK  YV   S+G+ + R++ A+I +  D  G++
Sbjct: 237 KALQSGTSHFLGQNFAKAFDVKFADKEGKMDYVWATSWGV-STRLIGALIMAHSDDNGLV 295

Query: 340 WPDSVAPFKISLINI-KAHDQVC--RDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  +APF++ ++ I K  +Q+    +  + I   L  +G  V +D+    + G +F+  
Sbjct: 296 LPPKLAPFQVVIVPIYKGAEQLALINEKVDGIVKSLKALGISVKYDNADNRKPGWKFSEY 355

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +L G P+++ +G++ + ++ VE+  R T  +E +S +
Sbjct: 356 ELKGVPVRLAMGARDMENNTVEVARRDTLTKETVSCD 392



 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +R+ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIVRPTSETIIWNTYRNWIQSYRDLPILVNQWANVVRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YS 162
           ++
Sbjct: 177 HT 178


>gi|262374878|ref|ZP_06068112.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309891|gb|EEY91020.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 640

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 150/400 (37%), Gaps = 54/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G  E+  P +    LW +SG   +Y  
Sbjct: 255 MQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYEEIRTPQVVDFTLWEKSGHAANYAD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSENRNYAV-KPMNCPCHVQVFNQGLKSYRDLPVRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGPEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----KLWDMAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP  + A++   D  +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPERLDASYVTEDNDRDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  +AP +  ++NI        +ACE + A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLAPMQACVMNITDSQA---EACESVVAKLKENGIRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610


>gi|28199783|ref|NP_780097.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182682533|ref|YP_001830693.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130161|sp|Q87AB2|SYT_XYLFT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691115|sp|B2I9P8|SYT_XYLF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28057904|gb|AAO29746.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632643|gb|ACB93419.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578811|gb|ADN62780.1| threonyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 635

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 156/422 (36%), Gaps = 48/422 (11%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +DAE   H+ + +      + +   G+  W P G      +   IR     +G  E+  P
Sbjct: 238 QDAEKRDHRKIGKAQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSGYGELRCP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +    LW +SG +D+Y KE +   D   +     P +      +F   + SYR+LP  +
Sbjct: 298 QILDVSLWQKSGHWDNY-KENMFFTDSEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRY 356

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R+E      G++R R F   D + F  T    +          L+++   G +
Sbjct: 357 GEFGACHRNEPSGALHGLLRVRGFTQDDGHIF-CTEAQIEAEVTAFHRQALQVYADFGFE 415

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +I ++    P   +G  LS +    A        C  ++ + P                 
Sbjct: 416 NIQIKIALRPDKRLGDSLSWDKAEAALRAALSA-CEVEWQELPGEG-------------- 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    + H   L D++    ++    ++       G +Y    S        +
Sbjct: 461 -----AFYGPKIEYH---LKDAIGRTWQLGTIQVDFMMPARLGAEYVDERSQ-------R 505

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            H V +    +G+M     ++   + G   IWP  +AP ++ + NI        +  E++
Sbjct: 506 RHPVMLHRAIVGSMERFIGILIEHYAG---IWPTWLAPVQVVIANIT---DAQYEYAEQV 559

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  L   G  V  D   E+IG +     L   P  ++VG +   +  V ++   T  RED
Sbjct: 560 HKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVAVR---TCSRED 616

Query: 429 MS 430
           + 
Sbjct: 617 LG 618


>gi|319400998|gb|EFV89217.1| threonyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 645

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 168/407 (41%), Gaps = 45/407 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M   +
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAM 321

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
               D+AM+  P +      I+++   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDEDEAMVLRPMNCPHHMMIYKNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++      ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIQDVYKDFGFEDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP 272
             +   +   D M     S   +  D + L    +I E   A Y    DV   ++  ++ 
Sbjct: 427 PEDKHKYFDDDEMWEKAESMLKEASDELGLTYEEAIGE--AAFYGPKLDV---QVKTAMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E
Sbjct: 482 KEETLSTAQLD----FLLPERFDL----TYIGQDGEQHRPVVIHRGVVSTMERFVAFLTE 533

Query: 331 SSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   KG  +P  +AP ++ +I  N+  H     D    +   L   G  V  DD  E++
Sbjct: 534 ET---KG-AFPTWLAPMQVEIIPVNVDLH----YDYARLLQDELKSQGVRVEIDDRNEKM 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A +   P Q++VG K V + +V ++   +  +E +  +E I
Sbjct: 586 GYKIREAQMKKIPYQIVVGDKEVENQEVNVRKYGSEKQESVEKDEFI 632


>gi|16129675|ref|NP_416234.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24112885|ref|NP_707395.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|26247970|ref|NP_754010.1| threonyl-tRNA synthetase [Escherichia coli CFT073]
 gi|30063014|ref|NP_837185.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|74311961|ref|YP_310380.1| threonyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|89108559|ref|AP_002339.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|91210933|ref|YP_540919.1| threonyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110641840|ref|YP_669570.1| threonyl-tRNA synthetase [Escherichia coli 536]
 gi|110805471|ref|YP_688991.1| threonyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|117623893|ref|YP_852806.1| threonyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|170081377|ref|YP_001730697.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680212|ref|YP_001743530.1| threonyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188492265|ref|ZP_02999535.1| threonyl-tRNA synthetase [Escherichia coli 53638]
 gi|191171752|ref|ZP_03033299.1| threonyl-tRNA synthetase [Escherichia coli F11]
 gi|194435142|ref|ZP_03067376.1| threonyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194438580|ref|ZP_03070669.1| threonyl-tRNA synthetase [Escherichia coli 101-1]
 gi|215486938|ref|YP_002329369.1| threonyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218558588|ref|YP_002391501.1| threonyl-tRNA synthetase [Escherichia coli S88]
 gi|218689663|ref|YP_002397875.1| threonyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218699714|ref|YP_002407343.1| threonyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218705218|ref|YP_002412737.1| threonyl-tRNA synthetase [Escherichia coli UMN026]
 gi|237705668|ref|ZP_04536149.1| threonyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238900934|ref|YP_002926730.1| threonyl-tRNA synthetase [Escherichia coli BW2952]
 gi|253773326|ref|YP_003036157.1| threonyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161779|ref|YP_003044887.1| threonyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|256022617|ref|ZP_05436482.1| threonyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|293405218|ref|ZP_06649210.1| threonyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|293410035|ref|ZP_06653611.1| threonyl-tRNA synthetase [Escherichia coli B354]
 gi|293415037|ref|ZP_06657680.1| threonyl-tRNA synthetase [Escherichia coli B185]
 gi|297517244|ref|ZP_06935630.1| threonyl-tRNA synthetase [Escherichia coli OP50]
 gi|298380861|ref|ZP_06990460.1| threonyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300938947|ref|ZP_07153648.1| threonyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300987614|ref|ZP_07178286.1| threonyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300994418|ref|ZP_07180923.1| threonyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|301017728|ref|ZP_07182383.1| threonyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301025270|ref|ZP_07188835.1| threonyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|306815028|ref|ZP_07449184.1| threonyl-tRNA synthetase [Escherichia coli NC101]
 gi|307138378|ref|ZP_07497734.1| threonyl-tRNA synthetase [Escherichia coli H736]
 gi|312966921|ref|ZP_07781139.1| threonyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|331642316|ref|ZP_08343451.1| threonine--tRNA ligase [Escherichia coli H736]
 gi|331653119|ref|ZP_08354124.1| threonine--tRNA ligase [Escherichia coli M718]
 gi|67473036|sp|P0A8M3|SYT_ECOLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67473037|sp|P0A8M4|SYT_ECOL6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67473038|sp|P0A8M5|SYT_SHIFL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122957455|sp|Q0T4S9|SYT_SHIF8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123084457|sp|Q1RB76|SYT_ECOUT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123343967|sp|Q0THB0|SYT_ECOL5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123732358|sp|Q3Z267|SYT_SHISS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223339|sp|A1ABQ2|SYT_ECOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701400|sp|B7MAS9|SYT_ECO45 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701401|sp|B7NT58|SYT_ECO7I RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701403|sp|B7N556|SYT_ECOLU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701404|sp|B1LE12|SYT_ECOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229557979|sp|B1XGI1|SYT_ECODH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783521|sp|B7USA2|SYT_ECO27 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783523|sp|B7MVJ7|SYT_ECO81 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516437|sp|C4ZYI1|SYT_ECOBW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|5107656|pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
           With Its Cognate Trna
 gi|26108373|gb|AAN80575.1|AE016761_150 Threonyl-tRNA synthetase [Escherichia coli CFT073]
 gi|1742811|dbj|BAA15498.1| threonyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|1788013|gb|AAC74789.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24051829|gb|AAN43102.1| threonine tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30041263|gb|AAP16992.1| threonine tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|73855438|gb|AAZ88145.1| threonine tRNA synthetase [Shigella sonnei Ss046]
 gi|91072507|gb|ABE07388.1| threonyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110343432|gb|ABG69669.1| threonyl-tRNA synthetase [Escherichia coli 536]
 gi|110615019|gb|ABF03686.1| threonine tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|115513017|gb|ABJ01092.1| threonine tRNA synthetase [Escherichia coli APEC O1]
 gi|169889212|gb|ACB02919.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170517930|gb|ACB16108.1| threonyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188487464|gb|EDU62567.1| threonyl-tRNA synthetase [Escherichia coli 53638]
 gi|190908082|gb|EDV67674.1| threonyl-tRNA synthetase [Escherichia coli F11]
 gi|194416606|gb|EDX32741.1| threonyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194422590|gb|EDX38588.1| threonyl-tRNA synthetase [Escherichia coli 101-1]
 gi|215265010|emb|CAS09396.1| threonyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218365357|emb|CAR03078.1| threonyl-tRNA synthetase [Escherichia coli S88]
 gi|218369700|emb|CAR17469.1| threonyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218427227|emb|CAR08113.2| threonyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218432315|emb|CAR13205.1| threonyl-tRNA synthetase [Escherichia coli UMN026]
 gi|222033474|emb|CAP76215.1| Threonyl-tRNA synthetase [Escherichia coli LF82]
 gi|226900425|gb|EEH86684.1| threonyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238863657|gb|ACR65655.1| threonyl-tRNA synthetase [Escherichia coli BW2952]
 gi|242377442|emb|CAQ32194.1| threonyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253324370|gb|ACT28972.1| threonyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973680|gb|ACT39351.1| threonyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253977874|gb|ACT43544.1| threonyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|260449158|gb|ACX39580.1| threonyl-tRNA synthetase [Escherichia coli DH1]
 gi|281600917|gb|ADA73901.1| Threonyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|284921639|emb|CBG34711.1| threonyl-tRNA synthetase [Escherichia coli 042]
 gi|291427426|gb|EFF00453.1| threonyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|291432685|gb|EFF05664.1| threonyl-tRNA synthetase [Escherichia coli B185]
 gi|291470503|gb|EFF12987.1| threonyl-tRNA synthetase [Escherichia coli B354]
 gi|294493274|gb|ADE92030.1| threonyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|298278303|gb|EFI19817.1| threonyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|299880135|gb|EFI88346.1| threonyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300306094|gb|EFJ60614.1| threonyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300400020|gb|EFJ83558.1| threonyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300406264|gb|EFJ89802.1| threonyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300456146|gb|EFK19639.1| threonyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|305851676|gb|EFM52129.1| threonyl-tRNA synthetase [Escherichia coli NC101]
 gi|307553740|gb|ADN46515.1| threonine tRNA synthetase [Escherichia coli ABU 83972]
 gi|307626794|gb|ADN71098.1| threonyl-tRNA synthetase [Escherichia coli UM146]
 gi|309701942|emb|CBJ01255.1| threonyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|312288385|gb|EFR16287.1| threonyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|315136359|dbj|BAJ43518.1| threonyl-tRNA synthetase [Escherichia coli DH1]
 gi|315286432|gb|EFU45867.1| threonyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315290480|gb|EFU49854.1| threonyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|320181253|gb|EFW56172.1| Threonyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320194570|gb|EFW69201.1| Threonyl-tRNA synthetase [Escherichia coli WV_060327]
 gi|323937321|gb|EGB33600.1| threonyl-tRNA synthetase [Escherichia coli E1520]
 gi|323940615|gb|EGB36806.1| threonyl-tRNA synthetase [Escherichia coli E482]
 gi|323952226|gb|EGB48099.1| threonyl-tRNA synthetase [Escherichia coli H252]
 gi|323956620|gb|EGB52358.1| threonyl-tRNA synthetase [Escherichia coli H263]
 gi|323962102|gb|EGB57698.1| threonyl-tRNA synthetase [Escherichia coli H489]
 gi|323973902|gb|EGB69074.1| threonyl-tRNA synthetase [Escherichia coli TA007]
 gi|323978098|gb|EGB73184.1| threonyl-tRNA synthetase [Escherichia coli TW10509]
 gi|324011501|gb|EGB80720.1| threonyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|331039114|gb|EGI11334.1| threonine--tRNA ligase [Escherichia coli H736]
 gi|331049217|gb|EGI21289.1| threonine--tRNA ligase [Escherichia coli M718]
 gi|332758628|gb|EGJ88947.1| threonyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|333003769|gb|EGK23305.1| threonyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333004377|gb|EGK23908.1| threonyl-tRNA synthetase [Shigella flexneri K-218]
 gi|333006570|gb|EGK26070.1| threonyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333018789|gb|EGK38082.1| threonyl-tRNA synthetase [Shigella flexneri K-227]
          Length = 642

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|294084802|ref|YP_003551562.1| threonyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664377|gb|ADE39478.1| Threonyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 641

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  M H  + + G   W   G      + + +R    +
Sbjct: 232 YLHMLEE----AEKRDHRKLGKQLDMFHLQEEAAGSVFWHQKGWFIYREIESYVRRRLEQ 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW ESG +D + + M      +++ +   P +      IFR  IK
Sbjct: 288 AGYGEVKTPQLVDRTLWEESGHWDKFRENMFTAQSEDERTLALKPMNCPCHVQIFRQGIK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +     R+E      G+MR R F   DA+ F
Sbjct: 348 SYRDLPLRMAEFGSCHRNEPSGALHGIMRVRAFTQDDAHIF 388


>gi|72381873|ref|YP_291228.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123759915|sp|Q46LV3|SYT_PROMT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72001723|gb|AAZ57525.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. NATL2A]
          Length = 641

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/424 (20%), Positives = 165/424 (38%), Gaps = 45/424 (10%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  +  + H  + + G+  W P G      +   IRE   +    E+  P 
Sbjct: 237 EAEKRDHRKLGKKYSLFHSQEEAPGMVFWHPKGWTIYRILEDFIRETITKYDYQEVKSPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG +D + ++M      N +  I  P +      IF   +KSYR+LP    
Sbjct: 297 VVDRSLWEKSGHWDKFKEDMFTTTSENREYAI-KPMNCPCHIQIFNQGLKSYRDLPIRLS 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F  T E  +            ++   G  S
Sbjct: 356 EFGSCHRNEPSGALHGLMRVRNFVQDDAHIF-CTDEQIQEEVQNFIDLVFEVYKTFGFDS 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + P+    S +    ++   ++   SK      +P E   +   I  +      
Sbjct: 415 ILIKLSTRPVKRVGSDDIWDKSEKALSEALDSKGLDWSLLPGEGAFYGPKIEFS------ 468

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH 310
                         L D L  N+      I+V         +S+P  ++A++    G+  
Sbjct: 469 --------------LKDCL--NRVWQCGTIQV--------DFSMPQRLNASYIDITGRKQ 504

Query: 311 Y-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G+      ++  ++ G    +P  ++P +I ++ I   +    +AC    
Sbjct: 505 TPVMLHRAILGSFERFIGILIENYSGN---FPTWLSPIQIMIMGITDRNN---EACFTAK 558

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G     D   E++G +     +   P  +I+G K   +S++ ++ R      +M
Sbjct: 559 DKLVDFGFRAEIDIRNEKVGFKIREHTMQRIPFLIIIGDKEEENSEISVRTREGKDLGNM 618

Query: 430 SLEE 433
           S+++
Sbjct: 619 SIDK 622


>gi|238883498|gb|EEQ47136.1| hypothetical protein CAWG_05697 [Candida albicans WO-1]
          Length = 691

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 137/346 (39%), Gaps = 72/346 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 287 DEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 346

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT + + +   ++   Y  ++  L   ++P                +V     E +
Sbjct: 347 HTAHLTKDAAANEVLQILDYYAGVYEEL--LAVP----------------VVKGKKTENE 388

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   D+                   + VE + A                       + R
Sbjct: 389 KFAGGDY------------------TTTVEGFIA----------------------ATGR 408

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKG 337
           GI+ G   + GT +S   + + +  +G +    +    S+G+ + RV+  +I +  D KG
Sbjct: 409 GIQGGTSHHLGTNFSKMFNISVENPEGSEKPRIFAYQNSWGL-STRVIGVMIMTHSDNKG 467

Query: 338 IIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE--QI 388
           ++ P  +A ++  +I +        A  +   +  EKI   L   G  V   D  E    
Sbjct: 468 LVLPPRIAQYQAVVIPVGLTSKSTDAQRKEINEGAEKIEQSLRANGIRVT-GDYREIYNP 526

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +FA  +L G PL+   G K ++ ++V I  R  G +  + L+E+
Sbjct: 527 GWKFADWELKGVPLRFEFGPKDLAGNQVTIVRRNDGKKYTVKLDEL 572


>gi|152988735|ref|YP_001347870.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166225481|sp|A6V485|SYT_PSEA7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150963893|gb|ABR85918.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 640

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHGYVEVRTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   A  +    +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTASESRDYAV-KPMNCPCHVQIFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  K          L+++   G   I M+  + P   +G D
Sbjct: 374 RVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLQVYRDFGFTDIAMKLSTRPAKRVGSD 430


>gi|225873756|ref|YP_002755215.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|259516262|sp|C1F9K5|SYT_ACIC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225794268|gb|ACO34358.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 681

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 158/421 (37%), Gaps = 67/421 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +REE  R G   +  P +    LW  SG    Y + M    
Sbjct: 299 GLIFWHPKGAMIRKIMEDWMREECIRRGYDLVYTPHVMRVQLWKTSGHEGFYSQNMFTPM 358

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +D      P +      I++S  +SYR+LP  + ++   +R E      G++R R F 
Sbjct: 359 ELDDAEYRLKPMNCPGHILIYKSQPRSYRDLPVRYAELGNVYRYERSGTMHGLLRVRGFT 418

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  TPE                                     +  E +   D 
Sbjct: 419 QDDAHIF-CTPE------------------------------------QIEDEVVACIDF 441

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDI-----------ISLNSIVEQWTAPYAATSDVHNE 265
            ++ V  +  FMDF +     D +D            ++++S+    T    A   +  E
Sbjct: 442 AQS-VLTTFGFMDFQVELSTWDPNDRKNYAGSDDKWNLAISSLESALTRKGIAYKTIAGE 500

Query: 266 KLFDSLPENKRVSARGIEV-GHIFYFGT-KYSLPMSATFK----GADGKDHYVQMGSYGI 319
             F       ++  + ++V G ++   T ++   + A F+    G DG+ H   M    +
Sbjct: 501 AAF----YGPKIDIKLVDVLGRLWQLSTVQFDFNLPARFELEYVGEDGERHQPVMVHRAL 556

Query: 320 -GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G++     V+   + G   +W   +AP +I L+ I           EK+  +L   G  
Sbjct: 557 YGSVERFFGVLIEHYAGAFPLW---LAPVQIGLVPISERHLAY---AEKVQQQLEAAGFR 610

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  D   E++ ++     L  FP  +I+G K      V ++ R  G +  + L+E I  A
Sbjct: 611 VELDRRNEKMNAKIRDFTLQKFPYVLIMGDKEAEAGAVSVRTRGKGDQGSLPLDEFIGRA 670

Query: 439 S 439
           +
Sbjct: 671 T 671


>gi|332880161|ref|ZP_08447843.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681920|gb|EGJ54835.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 493

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  +    +  F   D K  Y    S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFGKAFNVQFINKDNKLEYAWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  + +  +   +  E I ARL  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVIVPIYKNAEQLKAIDEKVEGIVARLRALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G + + ++ VE+  R T  +E  + + + +Y
Sbjct: 355 YELKGVPVRLVMGGRDLENNTVEVMRRDTLEKETRTCDGIEDY 397



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWCNVMRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++     M   Y
Sbjct: 173 WQEGHTAHATREEAEERAKLMLKVY 197


>gi|329724705|gb|EGG61211.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 645

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 168/407 (41%), Gaps = 45/407 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M   +
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAM 321

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
               D+AM+  P +      I+++   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDEDEAMVLRPMNCPHHMMIYKNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++      ++   G K    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIQDVYKDFGFKDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP 272
             +   +   D M     S   +  D + L    +I E   A Y    DV   ++  ++ 
Sbjct: 427 PEDKHKYFDDDEMWEKAESMLKEASDELGLTYEEAIGE--AAFYGPKLDV---QVKTAMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E
Sbjct: 482 KEETLSTAQLD----FLLPERFDL----TYIGQDGEQHRPVVIHRGVVSTMERFVAFLTE 533

Query: 331 SSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   KG  +P  +AP ++ +I  N+  H     D    +   L   G  V  DD  E++
Sbjct: 534 ET---KG-AFPTWLAPMQVEIIPVNVDLH----YDYARLLQDELKSQGVRVEIDDRNEKM 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A +   P Q++VG + V + +V ++   +  +E +  +E I
Sbjct: 586 GYKIREAQMKKIPYQIVVGDQEVENQEVNVRKYGSEKQESVEKDEFI 632


>gi|242373974|ref|ZP_04819548.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis M23864:W1]
 gi|242348328|gb|EES39930.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis M23864:W1]
          Length = 654

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 169/403 (41%), Gaps = 37/403 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 271 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 330

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ + M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 331 KLDETEEMVLRPMNCPHHMMIYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 390

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D++ F + P+  K  + ++      ++   G +    R +   P   +   +   + 
Sbjct: 391 TLNDSHIF-VRPDQIKEEFKRVVNMIQEVYEDFGFEDYTFRLSYRDPEDKEKYMDDDEMW 449

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E+ +  + D M  P             + +I E   A Y    DV   ++  ++ + 
Sbjct: 450 NKAESMLKEAVDEMGLPY------------VEAIGE--AAFYGPKLDV---QVKTAMGKE 492

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G+DG+ H   +   G+ +   R VA + E +
Sbjct: 493 ETLSTAQLD----FLLPERFEL----TYIGSDGEQHRPVVIHRGVVSTMERFVAFLTEET 544

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP ++ +I +     +  D   ++   L   G  V  DD  E++G + 
Sbjct: 545 ---KG-AFPTWLAPKQVEIIPVNV--DIHYDYARQLQDELKSQGVRVEIDDRNEKMGYKI 598

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 599 REAQMQKIPYQIVVGDKEVENNEVNVRKYGSEDQESLEKDEFI 641


>gi|229003388|ref|ZP_04161210.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
 gi|228757863|gb|EEM07086.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
          Length = 257

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D  G+
Sbjct: 4   GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGL 62

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F   ++ 
Sbjct: 63  VMPPKVAPVQVVIVPIAQHKEGVLEKATQLQGRIQKVA-RVKIDASNKTPGWKFNEYEMK 121

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 122 GVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQL 157


>gi|228950947|ref|ZP_04113068.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228808674|gb|EEM55172.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 476

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ E+   TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMILRPYGYALWENMQKVMDEKLKGTGHENVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    D+ +       PT E +  + F   ++SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E S+     +   Y                            
Sbjct: 153 LRTTEFLWQEGHTIHETAEESQAETLNILNLYAS-------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                       FC +D++  P I  + T+ +             A Y   S +H+    
Sbjct: 187 ------------FC-EDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD---- 222

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +
Sbjct: 223 ----------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGL 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  
Sbjct: 272 IMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQEHIQKVA-RVKIDASNKTP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   ++ G P+++ VG K +  ++V +  R T  +E + ++++
Sbjct: 331 GWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQL 376


>gi|153812523|ref|ZP_01965191.1| hypothetical protein RUMOBE_02922 [Ruminococcus obeum ATCC 29174]
 gi|149831448|gb|EDM86536.1| hypothetical protein RUMOBE_02922 [Ruminococcus obeum ATCC 29174]
          Length = 477

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 153/405 (37%), Gaps = 70/405 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG  +  P G    +N+   +      TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMAIKPAGYAIWENIQHELDRRFKETGVQNVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     +   + +   PT E +  D ++  I+S+R+LP  + Q    +++    RP    
Sbjct: 96  VTHGGLNELQERLCVRPTSETLFCDFYQKDIQSHRDLPKVYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +RSREFL ++ ++   T E ++    +M   Y                            
Sbjct: 153 LRSREFLWQEGHTAHATAEEAEERTIQMLNLY---------------------------- 184

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               AD      FC +      I  + TD +             A Y   S +H+ K   
Sbjct: 185 ----AD------FCEEVLAIPVIKGQKTDKEKFAGA-------VATYTIESLMHDGKALQ 227

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S              G    FG  ++      +   D    YV   S+G+   R++ A+I
Sbjct: 228 S--------------GTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGM-TTRMIGAII 272

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               D  G++ P  +AP +  +I I+   +   +  ++++A L   G  V  DD     G
Sbjct: 273 MVHGDNSGLVLPPRIAPTQAVIIPIQQRKEGVLEKADELFAALKAAGIRVKVDDTDRSPG 332

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +FA  ++ G P+++  G K + + +  I  R T  +  +S EE+
Sbjct: 333 FKFAEQEMRGIPVRIECGPKDIENGQAVICRRDTREKYVVSFEEL 377


>gi|268317819|ref|YP_003291538.1| prolyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262335353|gb|ACY49150.1| prolyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 496

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 138/336 (41%), Gaps = 65/336 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D F   I+S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 114 EENLIVRPTSETIIWDAFSRWIQSWRDLPILINQWANVVRWEMRTRL-FLRTMEFLWQEG 172

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E       +     LRI                    D+   F          
Sbjct: 173 HTAHATRE-------EAIEEALRIL-------------------DIYTTF---------- 196

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              ++++M  P+         I  + +  E+    +A   D +     ++L ++ R    
Sbjct: 197 ---AEEYMAMPV---------IQGVKTPSER----FAGAVDTY---CIEALMQDGR---- 233

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F+  + +  YV   S+G+ + R++ A++ +  D +G++ 
Sbjct: 234 ALQAGTSHFLGQNFAKAFDCKFQNQNNELEYVWATSWGV-STRLIGALVMTHSDDQGLVL 292

Query: 341 PDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           P  +AP ++ +I I  +D       +   +I   L   G  V  D     + G +F   +
Sbjct: 293 PPRLAPTQVVIIPIFRNDVEKSAVLEQAGRIERELKDAGFTVKLDARETHRPGWKFNEYE 352

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G P++V +G + V    VE+  R T  +E +  E
Sbjct: 353 VQGVPVRVAIGPRDVEQGTVELARRDTRTKETVPQE 388


>gi|262369846|ref|ZP_06063173.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262314885|gb|EEY95925.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 640

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/415 (20%), Positives = 156/415 (37%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW +SG   +Y  
Sbjct: 255 MQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYLEIRTPQVVDFTLWEKSGHAANYAD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    I  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 GMFTTHSESRNYAI-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGQEVADFIQLTLDVYKDFGFEDVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDMAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP  + A++   D  +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPERLDASYVTEDNDRDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  + P +  ++NI        +ACE + A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLTPIQACVMNITDSQA---EACESVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  ++
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGTNLGTMSIDAFVD 625


>gi|115359784|ref|YP_776922.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ambifaria
           AMMD]
 gi|115285072|gb|ABI90588.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ambifaria
           AMMD]
          Length = 402

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 156/418 (37%), Gaps = 55/418 (13%)

Query: 31  MIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           + HQ   S G   W P G      V   IR    +    E+  P + S DLW +SG ++ 
Sbjct: 15  LFHQQDESPGAIFWHPRGMVLYRVVEEYIRVRMRQAAFAEVRTPQIVSRDLWEQSGHWEK 74

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           +G+ M  L   N+   +  P        IF+   +SYR+LP  + +     R E      
Sbjct: 75  FGRNMFSLESDNNPYCL-KPMSCPCHVQIFKKGSRSYRDLPIRYSEFGAVHRAEPSGALH 133

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGD 205
           G+MR+R F   DA+     P+  +    +  V    I+   G     +   + P    GD
Sbjct: 134 GLMRARAFTQDDAHVL-CMPDQVEIEVARFCVLLKTIYADFGFGEFDVALSTRPAVRAGD 192

Query: 206 LSHEFIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +     + D  E  +  +     +DF I +    F                Y    + H
Sbjct: 193 DA-----VWDRSEAMLASAARAAGLDFAIQAGEGAF----------------YGPKLEFH 231

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
              LFD          R  + G I      + LP  + A +   DG K   V +    +G
Sbjct: 232 ---LFDR-------QGRKWQCGTI---QLDFVLPERLGAAYVAEDGAKATPVMLHHAVLG 278

Query: 321 AMRVVAAVIESSHDGKGIIW-PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           ++     ++   ++G    W P  +AP +I + NI   D+   D     +     +GC V
Sbjct: 279 SLERFIGILLEHYEG----WLPTWLAPDQIVVANIGKDDRAFADNTAFAF---EDIGCRV 331

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             D   E++  +   A  L  P+  I G K     +V ++ R  G +  +++ + + Y
Sbjct: 332 LRDFRAERLPRKIFDARELAAPIVAIAGRKEALAGEVSLRLR-DGEQHVLTINDALAY 388


>gi|330995811|ref|ZP_08319708.1| proline--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329574541|gb|EGG56106.1| proline--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 493

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  +    +  F   D K  Y    S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFGKAFNVQFINKDNKLEYAWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  + +  +   +  E I ARL  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVIVPIYKNAEQLKAIDEKVEGIVARLRALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G + + ++ VE+  R T  +E  + + + +Y
Sbjct: 355 YELKGVPVRLVMGGRDLENNTVEVMRRDTLEKETRTCDGIEDY 397



 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWCNVMRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    +M   Y
Sbjct: 173 WQEGHTAHATREEAEERAKQMLKVY 197


>gi|126695961|ref|YP_001090847.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166225476|sp|A3PBX1|SYT_PROM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126543004|gb|ABO17246.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 638

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 144/382 (37%), Gaps = 42/382 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      +   IRE   +   +E+  P      LW +SG ++ +  
Sbjct: 255 IQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M   A  N    I  P +      +F   +KSY++LP    +     R+E      G+M
Sbjct: 315 DMFTTASENRTYAI-KPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   +        ++   G   I ++  + P     S + 
Sbjct: 374 RVRNFTQDDAHIF-CTEEQIQEEVSTFIDLVFEVYKTFGFDEIIIKLSTRPEKRVGSEDI 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              ++   T+   +K+      P E   +   I  +                    L D 
Sbjct: 433 WDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFS--------------------LKDC 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L       +R  + G I      +S+P  + AT+   D  K + V +    +G+      
Sbjct: 473 L-------SRVWQCGTI---QVDFSMPIRLDATYVDIDNEKRNPVMLHRAILGSFERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   ++ K  IW   +AP++I L++I   +    + C K    ++  G     D   E+
Sbjct: 523 ILIEQYEAKFPIW---LAPYQIILLSITDRNI---EKCLKFNELINNNGYRSKVDIRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSK 409
           IG +   A L   PL  ++G K
Sbjct: 577 IGYKIREATLGRVPLIAVIGDK 598


>gi|241957631|ref|XP_002421535.1| proline--trna ligase, putative; prolyl-tRNA synthetase, putative
           [Candida dubliniensis CD36]
 gi|223644879|emb|CAX40877.1| proline--trna ligase, putative [Candida dubliniensis CD36]
          Length = 688

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 136/346 (39%), Gaps = 72/346 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 284 DEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 343

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT + +     ++   Y  ++  L   ++P                +V     E +
Sbjct: 344 HTAHLTKDAAAEEVLQILDYYAGVYEEL--LAVP----------------VVKGKKTENE 385

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   D+                   + VE + A                       + R
Sbjct: 386 KFAGGDY------------------TTTVEGFVA----------------------ATGR 405

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKG 337
           GI+ G   + GT +S   + + +  +G +    +    S+G+ + RV+  +I +  D KG
Sbjct: 406 GIQGGTSHHLGTNFSKMFNISVENPEGSEKPRIFAYQNSWGL-STRVIGVMIMTHSDNKG 464

Query: 338 IIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE--QI 388
           ++ P  +A ++  +I +        A  +   +  EKI   L   G  V   D  E    
Sbjct: 465 LVLPPRIAQYQAVVIPVGLTSKSTDAQRKEINEGAEKIEQSLRANGIRVT-GDYREIYNP 523

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +FA  +L G PL+   G K ++ ++V I  R  G +  + L+E+
Sbjct: 524 GWKFADWELKGVPLRFEFGPKDLAGNQVTIVRRNDGKKYTVKLDEL 569


>gi|195937403|ref|ZP_03082785.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|261227789|ref|ZP_05942070.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258046|ref|ZP_05950579.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|320641567|gb|EFX10955.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320646926|gb|EFX15759.1| threonyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320668281|gb|EFX35108.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
          Length = 622

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   K+ ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRGKDLGSMDVNEVI 605


>gi|150005824|ref|YP_001300568.1| prolyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254881996|ref|ZP_05254706.1| prolyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294776476|ref|ZP_06741951.1| proline--tRNA ligase [Bacteroides vulgatus PC510]
 gi|319640997|ref|ZP_07995704.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|166980101|sp|A6L5I2|SYP_BACV8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149934248|gb|ABR40946.1| prolyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254834789|gb|EET15098.1| prolyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294449673|gb|EFG18198.1| proline--tRNA ligase [Bacteroides vulgatus PC510]
 gi|317387375|gb|EFV68247.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 496

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D++ +  DA  E I  +L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEMLKKIDAKVEGIVNKLKAMGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E  S + +  Y   
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEYVQQ 400



 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++   +++ I SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    KM   Y
Sbjct: 173 WQEGHTAHATREEAEAEAQKMLHVY 197


>gi|53712976|ref|YP_098968.1| threonyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60681188|ref|YP_211332.1| threonyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|253563046|ref|ZP_04840503.1| threonyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265763073|ref|ZP_06091641.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|73919767|sp|Q5LEQ6|SYT_BACFN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919768|sp|Q64VP2|SYT_BACFR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52215841|dbj|BAD48434.1| threonyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60492622|emb|CAH07394.1| putative threonyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|251946822|gb|EES87104.1| threonyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263255681|gb|EEZ27027.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301162677|emb|CBW22224.1| putative threonyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 646

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 156/421 (37%), Gaps = 73/421 (17%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQDFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKG-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S DF +F          D ++    +   E W     A  +   EK   
Sbjct: 410 --------VFRSMDFDNF---EAQISLRDKVNREKYIGSDENWEKAEQAIIEACEEKGLK 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  P+ V    IS        +   +  EK+   L
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPEQVVILPIS--------EKFNEYAEKVKTYL 569

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                    DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 570 KMKEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKFE 629

Query: 433 E 433
           E
Sbjct: 630 E 630


>gi|289674656|ref|ZP_06495546.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 87

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI- 388
           E + D  GIIW D++APF+I+L+ ++      R+A +K+YA L+  G +V  DD  ++  
Sbjct: 1   EKNSDENGIIWNDTLAPFQIALVPLRYETDAVREATDKLYADLTAAGFEVLLDDRDKKTS 60

Query: 389 -GSQFAVADLLGFPLQVIVGSKFVSD 413
            G +FA  +L+G P +++V  + +++
Sbjct: 61  PGIKFADMELIGIPHRIVVSDRGLAE 86


>gi|212693169|ref|ZP_03301297.1| hypothetical protein BACDOR_02676 [Bacteroides dorei DSM 17855]
 gi|237709909|ref|ZP_04540390.1| prolyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237725421|ref|ZP_04555902.1| prolyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265753562|ref|ZP_06088917.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212664274|gb|EEB24846.1| hypothetical protein BACDOR_02676 [Bacteroides dorei DSM 17855]
 gi|229436108|gb|EEO46185.1| prolyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229456002|gb|EEO61723.1| prolyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|263235276|gb|EEZ20800.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 496

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D++ +  DA  E I  +L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEMLKKIDAKVEGIVNKLKAMGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E  S + +  Y   
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEYVQQ 400



 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++   +++ I SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    KM   Y
Sbjct: 173 WQEGHTAHATREEAEAEAQKMLHVY 197


>gi|119872334|ref|YP_930341.1| prolyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|152112945|sp|A1RSR6|SYP_PYRIL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119673742|gb|ABL87998.1| prolyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 488

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG Y W P G K   NV  +IR   + TG  E+  P     + +  ES     + KE+  
Sbjct: 40  KGAYVWRPYGMKLRRNVENLIRRIHDETGHEEVLFPVFIPYEFFSKESQHIRGFEKEVFW 99

Query: 96  LADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           ++   +  + +I  PT E  +  + +  I+ Y++LP   YQI   FR E +    ++R R
Sbjct: 100 VSKGGEGGERLILRPTSETAIMPMVKLWIQDYKDLPLRLYQIVSVFRAETKMTHPMIRLR 159

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           E  M K+A++   T E ++    +    Y RIF  + L
Sbjct: 160 EISMFKEAHTVHATREDAERQIREAVEIYKRIFDEMCL 197



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 5/169 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G + Y G  ++     T+   DG        SYGI    + A +I    DG G 
Sbjct: 226 GRTLQIGTVHYLGVNFTKVFEVTYLDIDGTRKLAHTTSYGISERSIAAMLITHGDDG-GT 284

Query: 339 IWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
             P  +AP ++ ++ I   ++         +++Y  L  VG  +  DD  ++  G +F  
Sbjct: 285 TLPPKLAPIQVVIVPIFYGEEEMPTVMKFVDEVYRMLRDVGIRIHIDDRRDKTPGWKFYY 344

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +L G PL++ VG + +   +V +  R T  +  +SL E+++      S
Sbjct: 345 WELKGVPLRIEVGRRDIEKRQVVVTRRDTLEKYAVSLGELVDAVKQLMS 393


>gi|307244722|ref|ZP_07526824.1| proline--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306491899|gb|EFM63950.1| proline--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 481

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 142/365 (38%), Gaps = 81/365 (22%)

Query: 80  WVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
           WV  G     G ++L  RLA R        PT E ++  ++   + SYR LPF + Q   
Sbjct: 98  WVTQG-----GNKVLEERLAVR--------PTSETIICTMYAKWLNSYRQLPFLYNQWNS 144

Query: 137 -LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
            +++    RP    +R+ EFL ++ ++   T + +     +   +Y ++           
Sbjct: 145 VVRWEKSTRP---FLRTSEFLWQEGHTIHETEQEAIDETLQQLATYKKV----------- 190

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                                       ++D M  P+         I    S  E+    
Sbjct: 191 ----------------------------AEDLMAIPV---------IDGKKSESEK---- 209

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +A  SD +         E      + ++ G   + G  ++     TF   DG   +    
Sbjct: 210 FAGASDTYT-------IEAMMHDGKALQSGTSHFLGQHFTKAFDITFSDRDGNLAHPYHT 262

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           S+GI + R++  +I    D +G++ P  +AP ++ +I I A+     +  +K+ A L   
Sbjct: 263 SWGI-STRLIGGLIMVHSDNRGLVLPPKMAPTQVIIIPIAANKGGVMEVVDKVAADLKAK 321

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD      G +F  A++ G P+++ +G K +  ++     R    + +MSL+ V
Sbjct: 322 GITVEVDDRSNYSPGYKFNDAEMKGIPVRLEIGPKDIEKNQALAFRRDELTKSEMSLDTV 381

Query: 435 INYAS 439
            +  S
Sbjct: 382 ADQVS 386


>gi|123968188|ref|YP_001009046.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166225480|sp|A2BQ78|SYT_PROMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123198298|gb|ABM69939.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 638

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 144/382 (37%), Gaps = 42/382 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      +   IRE   +   +E+  P      LW +SG ++ +  
Sbjct: 255 IQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M   A  N    I  P +      IF   +KSY++LP    +     R+E      G+M
Sbjct: 315 DMFTTASENRTYAI-KPMNCPCHIQIFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   +        ++   G   I ++  + P     S + 
Sbjct: 374 RVRNFTQDDAHIF-CTEEQIQEEVSTFIDLVFEVYKTFGFDEIIIKLSTRPEKRVGSEDI 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              ++   T+   +K+      P E   +   I  +                    L D 
Sbjct: 433 WDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFS--------------------LKDC 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L  N+      I+V         +S+P  + AT+   D  K + V +    +G+      
Sbjct: 473 L--NRVWQCGTIQVD--------FSMPIRLDATYVDIDNEKRNPVMLHRAILGSFERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   ++ K  IW   +AP++I L++I   +    + C K    ++  G     D   E+
Sbjct: 523 ILIEQYEAKFPIW---LAPYQIILLSITDRNI---EKCLKFNELINNNGYRSKVDIRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSK 409
           IG +   A L   PL  ++G K
Sbjct: 577 IGYKIREATLGRVPLIAVIGDK 598


>gi|261749214|ref|YP_003256899.1| prolyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497306|gb|ACX83756.1| prolyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 490

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 71/341 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E ++   FR  I SYR+LP    Q     R E       MR+R FL    +  
Sbjct: 117 LVIRPTSESIIWKTFRHWIHSYRDLPLLLNQWGNAIRWE-------MRTRLFLRTSEF-- 167

Query: 164 DLTPEG-SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            L  EG + HS  K              ++I    +   I  D S + + +       V 
Sbjct: 168 -LWQEGHTAHSTEK--------------EAIEETKKILNIYTDFSEKIMAIP-----VVQ 207

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             K +MD    SE T      SL ++++                             + +
Sbjct: 208 GMKPYMDKFSGSETT-----FSLEAMMQ---------------------------DGKAL 235

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G   + G  +S      F   +GK  YV   S+G+ + R++  ++    D  G+I P 
Sbjct: 236 QIGTSHFLGQNFSKAFDVKFTNKNGKKEYVWSTSWGV-STRLIGGIVMLHSDDHGLILPP 294

Query: 343 SVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGEQI---GSQFAVAD 396
            +AP +I +I I  + Q      +  E+I   + + G  V +D+   +I   G +F   +
Sbjct: 295 KIAPIQIVIIPIYKNKQELSKINEIAERIQKIIKEKGFSVKYDN--REIFTPGWKFHEYE 352

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           + G P+++ +G   +   K E+  R T  + D+S  ++I +
Sbjct: 353 MKGIPIRINIGLDEIIKEKAEVFRRDTYEKVDVSWNQIITF 393


>gi|313887217|ref|ZP_07820913.1| threonine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923446|gb|EFR34259.1| threonine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 650

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 170/419 (40%), Gaps = 62/419 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G +    +   ++  Q R G  ++  P + + +L+  SG Y  YG +  ++
Sbjct: 264 QGLPLWLPRGTQLRLKLEDFLKRIQKRYGYQQVMTPHIGNVELYKTSGHYAKYGADSFQV 323

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               +  +A +  P +     +I+R    SYR+LP    +    +R E      G+ R R
Sbjct: 324 ITTPQEGEAFMLKPMNCPHHCEIYRLKPHSYRDLPVRLAEFGTVYRYEQSGELHGLTRVR 383

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS----IPMRAE---SGPIGGDL 206
            F   DA+ F   P+  K  + K+      IF  L  ++    I +R++   S  IG + 
Sbjct: 384 GFTQDDAHIF-CRPDQVKEEFLKVMDIIFIIFRALDFENFEAQISLRSQTDRSKYIGSEE 442

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +       D  E  +  +      P    + ++D+            A Y    D     
Sbjct: 443 NW------DRAEQAIIEACQEAGLPA---HVEYDE-----------AAFYGPKLDF---M 479

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM- 322
           + D+L        R  ++G I      Y+LP      + G D + H  V +     G+M 
Sbjct: 480 VKDAL-------GRRWQLGTI---QVDYNLPERFDLEYTGEDNQKHRPVMIHRAPFGSME 529

Query: 323 RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           R VA +IE +  GK  +W  PD V    +S        +   +   ++ A LS+    V 
Sbjct: 530 RFVAVLIEHTA-GKFPLWLAPDQVVILPVS--------ERFNEYANEVAAALSEHDISVS 580

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD  E++G +    +L   P  +IVG +  +D  V ++ +  G   D+  E++  +A 
Sbjct: 581 IDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADGTVSVRKQGEG---DVGTEKISTFAE 636


>gi|119945879|ref|YP_943559.1| threonyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|166225485|sp|A1SWU5|SYT_PSYIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119864483|gb|ABM03960.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychromonas
           ingrahamii 37]
          Length = 635

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +RE+       E+  P +    LW +SG +  Y  
Sbjct: 255 MQEEAPGMVFWHSNGWTIYRELEKYVREQTEAYDYQEVKAPQILDRALWEKSGHWGKYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N    I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFCTSSENRDYAI-KPMNCPGHLQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E      +         +   G   I ++  + P   +G D +
Sbjct: 374 RVRAFTQDDAHIF-CTEEQILDEVSACIQMVFECYKTFGFDDIAVKLSTRPDQRVGDDAT 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+        + +     +P E   +   I                       L
Sbjct: 433 WD---KAEAALANALTTNNINYGVLPGEGAFYGPKIEFT--------------------L 469

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        RG + G I      +S+P  + A+F G D + H   M    I G++  
Sbjct: 470 YDCL-------GRGWQCGTI---QLDFSMPGRLDASFVGEDNERHTPVMIHRAILGSLER 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G   ++P  ++P ++ ++NI        D   ++  +L K G     D  
Sbjct: 520 FIGILTEEYAG---VYPTWLSPKQVVVMNITDKQSAFVD---EVVNKLKKSGIRAISDLR 573

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  +++G + V   +V ++ R
Sbjct: 574 NEKIGFKIREHTLKRVPYLLVIGDQEVEAGEVAVRTR 610


>gi|226954309|ref|ZP_03824773.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834935|gb|EEH67318.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 640

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 155/415 (37%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L+     W          +  K+
Sbjct: 431 ----ALWDIAE------KSLAD--------------ALDDAGLAWDL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP  + A++   D  +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPIRLDASYVTEDNERDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  +AP +  ++NI        DACE++ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLAPIQACVMNITDSQA---DACEQVVAKLKESGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSIDAFID 625


>gi|119485182|ref|ZP_01619567.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457410|gb|EAW38535.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 608

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/417 (19%), Positives = 168/417 (40%), Gaps = 44/417 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M  + 
Sbjct: 222 GLPLWTPKGTVLRSTLEDFLKKEQLKRGYLPVVTPHIGRIDLFKASGHWQQYREDMFPMM 281

Query: 98  DRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             +++A       +  P +      I++S ++SYR LP    +    +R E      G+ 
Sbjct: 282 AEDEEAAKLEQGFVLKPMNCPFHIQIYKSELRSYRELPIRLAEFGTVYRYEQSGELGGLT 341

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F + D++ F +TPE  +  +  +    L +F +L L +   R          S ++
Sbjct: 342 RVRGFTVDDSHLF-VTPEQLESEFLNVVDLILSVFGKLKLSNFKARLS---FRDPESDKY 397

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I     G  QV+ +K         E  + D  + +        A Y    D   + + D 
Sbjct: 398 I-----GSDQVW-NKAESAITKAVETLEMDHFLGIGE-----AAFYGPKLDFIFQDVLD- 445

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
                    R  ++G +      Y+LP      +   DG +   V +     G++  +  
Sbjct: 446 ---------REWQLGTV---QVDYNLPERFDLEYVAEDGTRQRPVMIHRAPFGSLERLIG 493

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G   +W   +AP ++ L+ +   D+      +++  ++  +      D   E+
Sbjct: 494 ILIEQYAGDFPLW---LAPIQVRLLAVS--DEFL-TYTQEVVEKMRSLDIRAEVDRSRER 547

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G Q   A+    P+  I+G+K V  + + I+ R +G    + ++EV     +  +N
Sbjct: 548 LGKQIRNAEKEKIPVMAIIGAKEVEANSLSIRTRASGELGTLPVDEVCQRIQNAIAN 604


>gi|332292754|ref|YP_004431363.1| threonyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170840|gb|AEE20095.1| threonyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 648

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/424 (20%), Positives = 167/424 (39%), Gaps = 45/424 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      +L L T    +  +G+  WLP G    + +   ++  Q +
Sbjct: 229 KEYLELIEEAKKRDHRKLGKELELFT-FSQRVGQGLPLWLPKGAALRERLENFLKAAQKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P +   +L+  SG Y+ YG +  +  L     +  +  P +     +I+ S 
Sbjct: 288 QGYEMVVSPHIGQKELYETSGHYEKYGADSFQPILTPNEGEEFLLKPMNCPHHCEIYNSR 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + K+   
Sbjct: 348 PWSYKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFMKVIDL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG ++   +              + L D  + + +   D  +  + +EN   +
Sbjct: 407 VLYVFGSLGFENFTAQ--------------VSLRDPEKPEKYIGAD--ENWVKAENAILN 450

Query: 241 DIIS--LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
              +  LN +VE   A +            D +   K    R  ++G I      Y+LP 
Sbjct: 451 AAKAKGLNYVVETGEAAFYGPK-------LDFMV--KDALGRSWQLGTI---QVDYNLPE 498

Query: 298 -MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +KG+D + H  V +     G+M    A++     G   +W   + P + +++ + 
Sbjct: 499 RFELQYKGSDNEMHRPVMIHRAPFGSMERFIAILLEHTGGNFPLW---LMPQQATILTL- 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      + +   L         D+ GE +G +   A++   P  +I+G +  +D  
Sbjct: 555 --SEKYEKYAQNVLTLLENHEIRAIIDNRGETMGKKIREAEMQKLPFMIIIGEQEENDGT 612

Query: 416 VEIK 419
           + ++
Sbjct: 613 ISVR 616


>gi|242242946|ref|ZP_04797391.1| threonyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233547|gb|EES35859.1| threonyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 645

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 168/407 (41%), Gaps = 45/407 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M   +
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAM 321

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
               D+AM+  P +      I+++   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDEDEAMVLRPMNCPHHMMIYKNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++      ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIQDVYKDFGFEDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP 272
             +   +   D M     S   +  D + L    +I E   A Y    DV   ++  ++ 
Sbjct: 427 PEDKHKYFDDDEMWEKAESMLKEASDELGLTYEEAIGE--AAFYGPKLDV---QVKTAMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E
Sbjct: 482 KEETLSTAQLD----FLLPERFDL----TYIGQDGEQHRPVVIHRGVVSTMERFVAFLTE 533

Query: 331 SSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   KG  +P  +AP ++ +I  N+  H     D    +   L   G  V  DD  E++
Sbjct: 534 ET---KG-AFPTWLAPMQVEIIPVNVDLH----YDYARLLQDELKSQGVRVEIDDRNEKM 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A +   P Q++VG K V + +V ++   +  +E +  +E I
Sbjct: 586 GYKIREAQMKKIPYQIVVGDKEVENQEVNVRKYGSEKQESVEKDEFI 632


>gi|241668765|ref|ZP_04756343.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877296|ref|ZP_05250006.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843317|gb|EET21731.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 635

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/382 (20%), Positives = 142/382 (37%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R    + G  E+  P +    LW +SG    Y + 
Sbjct: 256 QEDSPGIAFWHDSGVRIWREVEDYMRASNKKYGCGEIRTPLIADFSLWEKSGHASKYAEN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G+MR
Sbjct: 316 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLMR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F   PE  +     M      ++   G     ++    P   IG D + 
Sbjct: 375 VRSFTQDDGHIF-CAPEQVEEEVILMVKQCFEVYKDFGFNDFTVKIALRPENRIGNDETW 433

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 434 DK-------------SEQMLKNALDANNVAYE-------LLPGEGAFYGPKIEFH---LK 470

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G     V +    +G++   
Sbjct: 471 DAI-------GRSWQCGTI---QLDFSMPDRLGATYIDKNGNKQVPVMLHRAIVGSLERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   + P +++++ I  H     + C+K++  L K G     D   
Sbjct: 521 IGMLIEHYAGNMPLW---LTPVQVAVMGISNHQD---EYCQKVFETLEKNGIRAKLDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 575 EKIGFKIREHTLLRVPYLVILG 596


>gi|312886253|ref|ZP_07745867.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301278|gb|EFQ78333.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mucilaginibacter
           paludis DSM 18603]
          Length = 641

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 158/405 (39%), Gaps = 45/405 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G    + +   +++ Q + G  ++  P +   +L+V SG Y+ YG +  +  
Sbjct: 262 GLPLWLPKGTALRERLVNFLQKAQVKAGYEQVITPHIGHKNLYVTSGHYEKYGADSFQPI 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              +  +     P +     +I+++  +SY++LP  F +    +R E      G+ R R 
Sbjct: 322 KTPQEGEEFFLKPMNCPHHCEIYKTKPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+    L +F+ LG K    +              + L 
Sbjct: 382 FTQDDAHLF-CRPDQVKEEFKKVIDLVLYVFNALGFKDYTAQ--------------VSLR 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D      +              TD +  I+  +I+E        T  V  E  F     +
Sbjct: 427 DPENKAKYI------------GTDENWAIAEAAIIESAEEKGLPTVHVTGEAAFYGPKLD 474

Query: 275 ---KRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
              K    R  ++G I      Y+LP      + G+D + H  V +     G+M    AV
Sbjct: 475 FMVKDALGRKWQLGTI---QVDYNLPERFELEYTGSDNQKHRPVMIHRAPFGSMERFIAV 531

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     G   +W   ++P +  ++ I    +   +  +K+   L         D   E+I
Sbjct: 532 LIEHCAGNFPLW---LSPEQFIVLPI---SEKYEEYAKKLSDLLKDSDICGLIDFRDEKI 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G +   A++   P  +IVG K  ++  V ++    G    MS+EE
Sbjct: 586 GRKIRDAEVKKIPYMLIVGEKEEAEGMVSVRKHGEGDLGSMSIEE 630


>gi|27365716|ref|NP_761244.1| threonyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|31340449|sp|Q8DA13|SYT_VIBVU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27361865|gb|AAO10771.1| threonyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 642

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 159/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IRE+    G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSVFRDLEVFIREKLTEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +      N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTESQIQDEVTNCIKMVY-DTYQTFGFDNIAVKLSTRPEQRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + + MD                  I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQALESMDIAY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           FD L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 FDCL-------GRAWQCGTV---QLDFNLPNRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D  ++I  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVIMNITDKQA---DYVQEIAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G + +   ++ ++ R         +++ ++Y   + ++
Sbjct: 576 NEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGNDLGKFKVDDFVSYIQDQIAS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|258515613|ref|YP_003191835.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779318|gb|ACV63212.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 634

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 152/403 (37%), Gaps = 55/403 (13%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G    + +    R+E  + G  E+  P + +  LW +SG +D Y KE +     ++  
Sbjct: 267 PKGMILRNELEKFWRQEHEKRGYQEIRTPIILNRVLWEQSGHWDHY-KENMYFTQIDNFD 325

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      I++S + SYR  P    ++ L  R EL     G+MR R F   DA+ 
Sbjct: 326 FAVKPMNCPGSMLIYKSKLHSYREFPIRMGELGLVHRHELSGVLHGLMRVRCFTQDDAHI 385

Query: 163 FDLTPEGSKHSYNKM-----FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           F L  +        +     F S     + + L + P +A    +G D   E   +A   
Sbjct: 386 FMLPGQVKDEIIGVIDLVDDFYSIFGFKYHVELSTKPEKA----MGSD---EVWDMATNT 438

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +   +K  +D+ +   +  F                Y    D H E            
Sbjct: 439 LKEAIEAKG-LDYKVNEGDGAF----------------YGPKIDFHLEDCL--------- 472

Query: 278 SARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
             R  + G I   F    K+ L    ++ G DG+ H  V +     G++     ++    
Sbjct: 473 -GRTWQCGTIQLDFLMPEKFDL----SYVGEDGQKHRPVMLHRVVFGSIERFIGILTEHF 527

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    +P  +AP ++ ++ I        D   ++  RL + G  V  D   E+IG +  
Sbjct: 528 AGA---FPTWLAPVQVRVLPITDRQS---DYAVRVVDRLKETGIRVELDQRNEKIGYKIR 581

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            A     P  +++G K +    V I+HR  G     +LE+ I+
Sbjct: 582 EAQTQKIPYMLVIGDKELEKELVAIRHRSQGDLGISTLEDFID 624


>gi|297201097|ref|ZP_06918494.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197712117|gb|EDY56151.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 413

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 156/386 (40%), Gaps = 56/386 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---- 93
           G+  WLP G      +   +RE +   G   +  P L   +L+  SG +D Y  +M    
Sbjct: 26  GLPYWLPDGAVVRHVLEEYVRETERAAGYRHVYSPVLGKRELYEISGHWDHYSDDMFPPM 85

Query: 94  -LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            L   +   + ++  P+       I+RS   SYR LP  F ++   +R EL     G+ R
Sbjct: 86  RLGGGEGEGEEVVLRPSLCPHHALIYRSRSHSYRELPLRFAELGGMYRSELSGVLGGLTR 145

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R   + DA+ F  TPE +            R +  LG+++   R     + GD   +F+
Sbjct: 146 VRSIQLNDAHIF-CTPEQAVAEARAALALIRRAYDDLGIRAARYRLS---LPGDGDGKFV 201

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +         ++ +D        +++        VE   A Y    DV       S 
Sbjct: 202 PDPELWRRATALLEEVLD------GIEYES-------VEGEAAFYGPKIDVQI-----SD 243

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVI 329
           P  +  +   +++   F+   ++ L     + G DG+ H  V +    IG++ R VA +I
Sbjct: 244 PAGRESTLSTVQID--FHQPERFDL----HYIGRDGRKHRPVMVHRSIIGSVERAVAHLI 297

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI------KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           E +H G   +W   +AP ++ ++ +      +AHD V R     I A LS  G       
Sbjct: 298 E-AHGGAFPVW---LAPVQLVILPVAEEQEERAHDLVRRAEARGIRAELSGPGHGT---- 349

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSK 409
               +G++   A L+  P Q ++G +
Sbjct: 350 ----LGARVRAARLV--PYQAVIGQR 369


>gi|116747872|ref|YP_844559.1| threonyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116696936|gb|ABK16124.1| threonyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 644

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 156/394 (39%), Gaps = 55/394 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G      + A  + E  R G   +  PTL   +LW  SG ++ Y +E +   
Sbjct: 262 GMVIYHPRGALLRHILEAFEKREHLRRGYHIVMGPTLLKTELWKRSGHFEHY-RENMYFT 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  +++    P +      I++S ++SYR+LP  ++++    R E      G+ R R+F 
Sbjct: 321 EIEEQSYGIKPMNCLAHMLIYKSRLRSYRDLPLRYFELGTVHRHERSGVLHGLTRVRQFT 380

Query: 157 MKDAYSFDLTPE---GSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEF 210
             DA+    TPE   G   S     +  + IF   H + + + P ++    IG D   E 
Sbjct: 381 QDDAHIL-CTPEQLHGEIQSIIDFVIEVMGIFGFNHEMEISTRPAKS----IGSDEDWER 435

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A     +        D  IP +            + E   A Y    DV   KL D+
Sbjct: 436 ATSALIDALE--------DKGIPYQ------------VCEGEGAFYGPKIDV---KLRDA 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAA 327
           L    + +               ++LP     T+ G DG  H  V +    +G++     
Sbjct: 473 LDRKWQCAT----------IQCDFTLPDRFDLTYVGVDGNRHRPVMVHRVVLGSLERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+     G    +P  +AP +  ++ +    Q+  +    +Y RL + G  V  DD  E+
Sbjct: 523 VLVEHFAGA---FPTWLAPVQAIVVTV-TDGQI--EFARNMYDRLREAGVRVELDDRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +G +   A +   P  +++G + V+   V  + R
Sbjct: 577 LGYKIREAQMQKVPYMLVIGDREVAAGGVAPRRR 610


>gi|255659698|ref|ZP_05405107.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260848272|gb|EEX68279.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 639

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 177/448 (39%), Gaps = 54/448 (12%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    R+   R G
Sbjct: 233 YLHMLEEAKKRDHRKLGKQLDLFS--LHEEGPGFPFFHPNGMIVRNELINYWRDVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E+  P + +  LW  SG +D Y + M     D  D A+   P +      ++ S   S
Sbjct: 291 YQEIKTPIILNRQLWETSGHWDHYKENMYFTKIDGEDYAI--KPMNCPGGMLVYNSKQHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R E      G+ R R F   DA+ F +TP+  +         +  
Sbjct: 349 YRDLPLRLGELGLVHRHEKSGELHGLFRVRNFTQDDAHLF-VTPDQVEQEIQHTIDLFDE 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +++  GL  +     + P     + E   LA  G  +              E+   D I+
Sbjct: 408 VYNTFGLTYVA-ELSTRPDDSMGTDEDWELATNGLRKAL------------EHRGLDYIV 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-KYSLPM---- 298
           +     E   A Y    D H   L DS             +G  +  GT +Y + M    
Sbjct: 455 N-----EGDGAFYGPKIDFH---LKDS-------------IGRTWQCGTIQYDMQMPEKF 493

Query: 299 SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           + T+ G DG+ H  + +     G++     ++  ++ G    +P  +AP +  ++ I   
Sbjct: 494 NLTYVGEDGEKHRPIMLHRVVYGSIERFIGILIENYAG---AFPTWLAPVQARILPITDK 550

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  ++  +G  +  DD  E+IG +   + +L  P  ++VG + ++D  V 
Sbjct: 551 QA---DYAYELRKKMFDLGLRIEVDDRSEKIGKKIRESQMLKTPYSLVVGDQEMADGTVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++       E M +E+ I Y   + +  
Sbjct: 608 VRKYGEQQSETMKVEDFIAYLQEQIATK 635


>gi|37680129|ref|NP_934738.1| threonyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|37198875|dbj|BAC94709.1| threonyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 655

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 159/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IRE+    G  E+  P +    LW  SG +D Y  
Sbjct: 270 MQQEAPGMVFWHHNGWSVFRDLEVFIREKLTEYGYQEVKGPLMMDRVLWERSGHWDKYAD 329

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 330 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 388

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +      N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 389 RVRGFTQDDAHIFCTESQIQDEVTNCIKMVY-DTYQTFGFDNIAVKLSTRPEQRVGSD-- 445

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + + MD                  I E   A Y    +     L
Sbjct: 446 ----EIWDQSEEALKQALESMDIAY--------------EIQEGEGAFYGPKIEF---TL 484

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           FD L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 485 FDCL-------GRAWQCGTV---QLDFNLPNRLGATYVGENNERLVPVMIHRAILGSLER 534

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D  ++I  +L K G     D  
Sbjct: 535 FIGILIEEYAG---FFPTWLAPEQAVIMNITDKQA---DYVQEIAQKLQKCGIRAKADLR 588

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G + +   ++ ++ R         +++ ++Y   + ++
Sbjct: 589 NEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGNDLGKFKVDDFVSYIQDQIAS 648

Query: 445 NR 446
            +
Sbjct: 649 RK 650


>gi|304436955|ref|ZP_07396918.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369906|gb|EFM23568.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 639

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 153/399 (38%), Gaps = 57/399 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    + +    RE   R G  E+S P + S  LW  SG +  Y +
Sbjct: 257 LHEEGPGFPFFHPNGMALRNALLDYWREVHRRYGYQEISTPVILSRKLWETSGHWFHYRE 316

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      ++RS + SYR+LP    ++ L  R EL     G+
Sbjct: 317 NMYTTEIDEEDYAI--KPMNCPGCMLVYRSQLHSYRDLPLRLAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTP---EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            R R F   DA+ F +TP   EG       +F    R F       +  R E   +G D 
Sbjct: 375 FRVRNFTQDDAHLF-VTPDQIEGEIQHTIDLFDEVYRTFGLTYKAELSTRPEDS-MGTD- 431

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E   +A  G  +              +N   D +++     E   A Y    D H   
Sbjct: 432 --EMWEMATNGLQKAL------------DNRGLDYVVN-----EGDGAFYGPKIDFH--- 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
           L DS             +G  +  GT     SLP     T+ G DG+ H  V +     G
Sbjct: 470 LRDS-------------IGRTWQCGTIQLDMSLPEKFDLTYVGEDGEKHRPVMLHRVVYG 516

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++  ++ G   +W   +AP ++ ++ I           E++Y ++  +G  V 
Sbjct: 517 SIERFIGILIENYAGAFPVW---MAPVQVRILPITERHAAY---AEELYKKMFDLGLRVE 570

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D   E+ G +   + +   P  ++VG + +    V  +
Sbjct: 571 VDARNEKTGYKIRESQVKKTPYTLVVGDQEMESGTVAFR 609


>gi|198275270|ref|ZP_03207801.1| hypothetical protein BACPLE_01429 [Bacteroides plebeius DSM 17135]
 gi|198271853|gb|EDY96123.1| hypothetical protein BACPLE_01429 [Bacteroides plebeius DSM 17135]
          Length = 496

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I  +L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVNKLRSMGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +EI  R T  +E  S + +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCDGIEEYVQN 400



 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++   +++ I SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    KM   Y
Sbjct: 173 WQEGHTAHATREEAEAEAQKMLHVY 197


>gi|157165430|ref|YP_001465955.1| threonyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|171855003|sp|A7ZAZ7|SYT_CAMC1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112801821|gb|EAT99165.1| threonyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 606

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 94/419 (22%), Positives = 159/419 (37%), Gaps = 61/419 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P L  AD+W  SG Y +Y KE +   
Sbjct: 232 GLPIWLPNGGRLRSKLEQLLYKAHRDRGYEPVRGPELLKADVWRRSGHYANY-KENMYFT 290

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      +++S I+SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 291 TIDETEYGIKPMNCVGHIKVYQSDIRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFA 350

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             D++ F   P   K +  ++      I    G     M   + P   IGGD       +
Sbjct: 351 QDDSHIF-CMPSQIKENILEILKFAGTIMENFGF-HYEMEISTKPAKAIGGD------EI 402

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            DT    +  + D   F                 I E   A Y    D+   K+ D+L  
Sbjct: 403 WDTATKALKEALDENGFKY--------------GIDEGGGAFYGPKIDI---KITDAL-- 443

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--------HYVQMGSYGIGAMRVV 325
                 R  + G I      ++LP        D  +        H   +GS+     R +
Sbjct: 444 -----KRKWQCGTI---QVDFNLPERFDLGYIDANNERQRPVMLHRALLGSF----ERFI 491

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             ++E +        P  +AP ++ ++ I  AH     D  ++I   L K+  D      
Sbjct: 492 GILLEHTAGE----LPFFIAPTQVVIVPISDAH----LDYAKEISRELRKINVDSEIASK 543

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E +  +   A+    P+ V++G   V++  V ++ R    + DMSL E +N    + S
Sbjct: 544 NESLNKRIRTAEKQRVPMIVVLGDNEVANKSVALRDRQARTQSDMSLAEFVNLTKEKLS 602


>gi|71275167|ref|ZP_00651454.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|170731158|ref|YP_001776591.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|238687955|sp|B0U5E3|SYT_XYLFM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71163976|gb|EAO13691.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|167965951|gb|ACA12961.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
          Length = 635

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 156/422 (36%), Gaps = 48/422 (11%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +DAE   H+ + +      + +   G+  W P G      +   IR     +G  E+  P
Sbjct: 238 QDAEKRDHRKIGKAQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSGYGELRCP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +    LW +SG +D+Y KE +   D   +     P +      +F   + SYR+LP  +
Sbjct: 298 QILDVSLWQKSGHWDNY-KENMFFTDSEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRY 356

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R+E      G++R R F   D + F  T    +          L+++   G +
Sbjct: 357 GEFGACHRNEPSGALHGLLRVRGFTQDDGHIF-CTEAQIEAEVTAFHRQALQVYADFGFE 415

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +I ++    P   +G  LS +    A        C  ++ + P                 
Sbjct: 416 NIQIKIALRPDKRLGDSLSWDKAEAALRAALSA-CEVEWQELPGEG-------------- 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    + H   L D++    ++    ++       G +Y    S        +
Sbjct: 461 -----AFYGPKIEYH---LKDAIGRTWQLGTIQVDFMMPGRLGAEYVDERSQ-------R 505

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            H V +    +G+M     ++   + G   IWP  +AP ++ + NI        +  E++
Sbjct: 506 RHPVMLHRAIVGSMERFIGILIEHYAG---IWPTWLAPVQVVIANIT---DAQYEYAEQV 559

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  L   G  V  D   E+IG +     L   P  ++VG +   +  V ++   T  RED
Sbjct: 560 HKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVAVR---TCSRED 616

Query: 429 MS 430
           + 
Sbjct: 617 LG 618


>gi|229496735|ref|ZP_04390446.1| prolyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316281|gb|EEN82203.1| prolyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 517

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F   +G+   V   S+G+ + R++ A+I S  D  G++
Sbjct: 261 KALQSGTSHFLGQNFAKAFDVYFLNKEGQRELVWATSWGV-STRLMGALIMSHSDDNGLV 319

Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P S+AP ++ ++ I   + H    R+  E +   L   G  V  DD   ++ G +FA  
Sbjct: 320 LPPSLAPIQVVIVPIYKTEEHLATIRERVEPLIKDLRARGISVKLDDNDNKKPGWKFAEY 379

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +L G P+++ +G++ +    VE+  R T  +E ++ E + ++
Sbjct: 380 ELKGIPVRLALGARDLEQGTVEVARRDTLTKETVAFEGIADH 421



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++   +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 142 EEELIVRPTSETIIWSTYKNWIQSYRDLPVLCNQWANVVRWEMRTRL-FLRTAEFLWQEG 200

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T E +     KM   Y
Sbjct: 201 HTAHATREEAVAEAEKMLEVY 221


>gi|15802131|ref|NP_288153.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15831680|ref|NP_310453.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168762217|ref|ZP_02787224.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168788115|ref|ZP_02813122.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168800100|ref|ZP_02825107.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|187776029|ref|ZP_02799987.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188024843|ref|ZP_02774486.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189010441|ref|ZP_02807141.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189402338|ref|ZP_02781727.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189403439|ref|ZP_02795487.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|208810744|ref|ZP_03252620.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208816647|ref|ZP_03257767.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|209400429|ref|YP_002270789.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217328990|ref|ZP_03445071.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254793336|ref|YP_003078173.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|291282899|ref|YP_003499717.1| Threonyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|22654116|sp|Q8XE27|SYT_ECO57 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238065112|sp|B5YQ07|SYT_ECO5E RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12515733|gb|AAG56706.1|AE005395_2 threonine tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13361893|dbj|BAB35849.1| threonine tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187769425|gb|EDU33269.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188016225|gb|EDU54347.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189000290|gb|EDU69276.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189356196|gb|EDU74615.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189360618|gb|EDU79037.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189367509|gb|EDU85925.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189372060|gb|EDU90476.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189377572|gb|EDU95988.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|208725260|gb|EDZ74967.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208730990|gb|EDZ79679.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|209161829|gb|ACI39262.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209768828|gb|ACI82726.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768830|gb|ACI82727.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768832|gb|ACI82728.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768834|gb|ACI82729.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768836|gb|ACI82730.1| threonine tRNA synthetase [Escherichia coli]
 gi|217318337|gb|EEC26764.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254592736|gb|ACT72097.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290762772|gb|ADD56733.1| Threonyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320188406|gb|EFW63068.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320652208|gb|EFX20506.1| threonyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320657809|gb|EFX25571.1| threonyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658384|gb|EFX26078.1| threonyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|326342086|gb|EGD65867.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|326343638|gb|EGD67400.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 642

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   K+ ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRGKDLGSMDVNEVI 625


>gi|304406649|ref|ZP_07388304.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304344182|gb|EFM10021.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 645

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/423 (20%), Positives = 167/423 (39%), Gaps = 55/423 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G +    +   I + + R G   +  P L + +L+  SG ++ Y ++M   
Sbjct: 264 QGLPLWLPNGARVRRTMERYIVDLEERLGYSHVYTPVLANVELYKISGHWEHYSEDMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      +++S ++SYR+LP    ++    R E+     G+ R R  
Sbjct: 324 MALDNEELVLRPMNCPHHMMVYKSDMRSYRDLPIRVAELGTMHRYEMSGALTGLHRVRAM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++     +++   G+K    R         LS+      D
Sbjct: 384 TLNDAHIF-CRPDQIKEEFARVINLIRQVYADFGIKEYRFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP----------YAATSDVHNE 265
             +T+ +          P +N        L  +VE+   P          Y    DV   
Sbjct: 429 PQDTEKY---------FPDDNMWEMSQRMLREVVEELELPFFEAEGEAAFYGPKLDV--- 476

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRV 324
           ++  +L + + +S   ++    F    ++ L     + G DGK H   +   G I  M  
Sbjct: 477 QIKTALGKEETLSTAQLD----FLLPERFEL----EYVGDDGKKHRPVVIHRGIISTMER 528

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           + A +  +  G   +W   ++P    +I +  A+D   R+  EK+ A     G     D 
Sbjct: 529 MTAYLLENFAGALPLW---LSPMHARVIPVSSAYDGYAREVEEKLLA----AGVRAESDL 581

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E++G +   A L   P  +IVG        V ++ R  G      + E+I   +   +
Sbjct: 582 RNEKLGYKIREAQLEKLPYMLIVGDNEAQAGTVSVRKRGEGDIGSKEVSELIALLTEEIA 641

Query: 444 NNR 446
             +
Sbjct: 642 TKK 644


>gi|281420331|ref|ZP_06251330.1| proline--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405633|gb|EFB36313.1| proline--tRNA ligase [Prevotella copri DSM 18205]
          Length = 493

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     T+   + K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTYLNKENKPEYVWATSWGV-STRLMGALIMVHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I   D+       K+     +L ++G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKLAPIQVVIVPINKGDEQLAQITAKLQPVIDQLRELGITVKYDDNPAKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + ++ +EI  R T  +E++S + ++
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIEIMRRDTLEKENVSFDGIV 395



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +I  PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 DEELIIRPTSETIIWNTYKNWIHSWRDLPILCNQWCNVMRWEMRTR-PFLRTSEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T E ++    +M   Y
Sbjct: 177 HTAHATKEEAEAKAQEMLKVY 197


>gi|167626332|ref|YP_001676832.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189083609|sp|B0TY89|SYT_FRAP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167596333|gb|ABZ86331.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 635

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/382 (20%), Positives = 142/382 (37%), Gaps = 48/382 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + S GI  W   G +    V   +R    + G  E+  P +    LW +SG    Y + 
Sbjct: 256 QEDSPGIAFWHDNGVRIWREVEDYMRASNKKYGCGEIRTPLIADFSLWEKSGHASKYAEN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      N    I  P +      ++ + + SYR+LP    +  +  R+E      G+MR
Sbjct: 316 MFATKSENRDFAIR-PMNCPTCVQVYNTKLHSYRDLPIRMAEFGIVHRNEPSGSLHGLMR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   D + F   PE  +     M      ++   G     ++    P   IG D + 
Sbjct: 375 VRSFTQDDGHIF-CAPEQVEEEVILMVKQCFEVYKDFGFNDFTVKIALRPENRIGNDETW 433

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +              S+  +   + + N  ++       ++    A Y    + H   L 
Sbjct: 434 DK-------------SEQMLKNALDANNVAYE-------LLPGEGAFYGPKIEFH---LK 470

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D++        R  + G I      +S+P  + AT+   +G     V +    +G++   
Sbjct: 471 DAI-------GRSWQCGTI---QLDFSMPDRLGATYIDKNGNKQVPVMLHRAIVGSLERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   + P +++++ I  H     + C+K++  L K G     D   
Sbjct: 521 IGMLIEHYAGNMPLW---LTPVQVAVMGISNHQD---EYCQKVFETLEKNGIRAKLDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVG 407
           E+IG +     LL  P  VI+G
Sbjct: 575 EKIGFKIREHTLLRVPYLVILG 596


>gi|70729481|ref|YP_259219.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68343780|gb|AAY91386.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 640

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 11/197 (5%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRDNGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y + M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYAENMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   + ++   G K
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEDQMQAESAAFIKLTMDVYADFGFK 413

Query: 192 SIPMRAESGP---IGGD 205
            I M+  + P   +G D
Sbjct: 414 DIEMKLSTRPEKRVGSD 430


>gi|240047193|ref|YP_002960581.1| prolyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239984765|emb|CAT04739.1| Prolyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 480

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 4/166 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y G  +S     TFK  D +  YV   S+G+ + R++ A+I +  D +GI
Sbjct: 221 GRALQAGTSHYLGQNFSKNFDITFKNKDNQLEYVYQTSWGV-STRLIGALIMTHGDDRGI 279

Query: 339 IWPDSVAPFKISLIN--IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I P ++A +K+ ++   +  H  + + A  K+   L         D    Q+G + A ++
Sbjct: 280 IIPPAIAEYKVDILAFFVNKHPNL-KKAILKLSDELDDFHITNRVDLSDNQVGFKIANSE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +LG P+++ +G + +   +V +  R T  ++ +   +++N+    F
Sbjct: 339 VLGTPVRIEIGPRDLEAKQVVVVRRDTLEKKIVPTSQIVNHLEQLF 384


>gi|239624742|ref|ZP_04667773.1| prolyl-tRNA synthetase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521128|gb|EEQ60994.1| prolyl-tRNA synthetase [Clostridiales bacterium 1_7_47FAA]
          Length = 479

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      F   D    YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFDIQFTDKDNTLKYVHQTSWGM-TTRMIGALIMVHGDDNGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ ++   +   D   ++  RL K G  V  DD  +  G +FA  ++ 
Sbjct: 284 VLPPRIAPVQVMIVPVQQQKEGVLDKAFQLEDRLKKAGFSVKTDDSEKSPGWKFADCEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL+V +G K +  ++  +  R T  +  +SL+E+
Sbjct: 344 GIPLRVEIGPKDMEKNQAVLVRRDTHEKSFISLDEL 379


>gi|153955810|ref|YP_001396575.1| threonyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219856177|ref|YP_002473299.1| hypothetical protein CKR_2834 [Clostridium kluyveri NBRC 12016]
 gi|189083603|sp|A5N258|SYT_CLOK5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783517|sp|B9E5W0|SYT_CLOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146348668|gb|EDK35204.1| ThrS [Clostridium kluyveri DSM 555]
 gi|219569901|dbj|BAH07885.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 637

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 161/411 (39%), Gaps = 49/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH+   G   + P G    + +    RE   +    E+  P + + +LW  SG +D Y K
Sbjct: 255 IHEEGPGFPFFHPKGMVIRNTLQNFWREMHYKADYSEIMTPIILNEELWHRSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D      P +      ++++ I+SYR+LP  + ++ +  R E      G+M
Sbjct: 314 ENMYFTKIDDGNYAIKPMNCPGSILVYKNDIRSYRDLPKRYAEMGVVHRHEKSGALHGLM 373

Query: 151 RSREFLMKDAYSF----DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           R R F   DA+ F    D+  E  K     +  ++ +IF       +  R E   +G D 
Sbjct: 374 RVRCFTQDDAHIFVTKDDIADEIIK--VIDLIDNFYKIFGFEYFVELSTRPEDS-MGSDE 430

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A T   +       +D+ I   +  F                Y    D H   
Sbjct: 431 DWE----AATEGLKNALKMVGLDYKINEGDGAF----------------YGPKIDFH--- 467

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           L D +    +     ++    F    K+ L     + GADG+ H  V +     G++   
Sbjct: 468 LKDCIGRTWQCGTVQLD----FQMPEKFDL----NYIGADGEKHRPVMIHRVVFGSIERF 519

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             ++   + G    +P  +AP ++ ++NI  A      +  + +     +V CD+     
Sbjct: 520 IGILIEHYAGA---FPAWIAPVQVQVMNITDAQADYVAEVAKTLKENNIRVECDI----R 572

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +   A +   P  +I+G K + D  + ++ R  G    MSLE+ I
Sbjct: 573 NEKIGYKIREAQMHKVPYMIILGDKEMKDKNISVRSRKEGDIGAMSLEDFI 623


>gi|94495624|ref|ZP_01302204.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94425012|gb|EAT10033.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 665

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 155/430 (36%), Gaps = 68/430 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G   W P G     N+ A +R   +  G  E+  P +  A  W +SG +  Y +
Sbjct: 265 LQQEAHGSVFWHPKGYVIWRNLEAYMRRAIDDAGYREVKTPQVMDARQWEQSGHWGKYRE 324

Query: 92  EMLRLADR-----------NDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D            +D A  M   P +      IFR  IKSYR+LP  FY+    
Sbjct: 325 NMFVIPDEVPNVEDEGPLVSDDADWMALKPMNCPAHVLIFRQGIKSYRDLPLRFYENGCC 384

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R+E      G+MR R+F   DA+ F               V  +R F  L  +      
Sbjct: 385 HRNEPHGALHGLMRVRQFTQDDAHIF---------CREDQIVEEVRAFCALADR------ 429

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I  D    + +       + F +++  D                    E+     A
Sbjct: 430 ----IYKDFGFTYSIKLALRPEKRFGTEEMWD-----------------KAEEELRNAVA 468

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIE------VGHIFYFGTKYS---LP--MSATFKGAD 306
           A      +  ++ LP      A  +E      +G  +  GT  S   LP  + A++ G D
Sbjct: 469 AAGLNTPDYGWEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQSDRVLPERLDASYIGED 528

Query: 307 GKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+ H   M    I G+      ++   + GK  +W   +AP +  +  I +      D  
Sbjct: 529 GERHRPVMLHRAIFGSYERFIGILIEHYAGKFPLW---LAPVQAVVATIVSD---ADDYA 582

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +    RL   G     D   E+I  +     L   P  ++VG +   +  V ++      
Sbjct: 583 KATVDRLRAAGIRAELDTRNEKINYKVREHSLAKVPNLLVVGRREADEGTVALRELGKDG 642

Query: 426 REDMSLEEVI 435
           +  +SL++VI
Sbjct: 643 QSVLSLDDVI 652


>gi|260590692|ref|ZP_05856150.1| proline--tRNA ligase [Prevotella veroralis F0319]
 gi|260537353|gb|EEX19970.1| proline--tRNA ligase [Prevotella veroralis F0319]
          Length = 493

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I   ++  ++   K+      L ++G  V +DD   ++ G +FA 
Sbjct: 295 VLPPKIAPIQVVIVPIFKGEEQLKELTAKLQPVIDSLRELGITVKYDDTDNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + ++ +E   R T  +E +S + ++
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIEFMRRDTLEKESVSFDGIV 395


>gi|315925309|ref|ZP_07921520.1| proline--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621210|gb|EFV01180.1| proline--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 482

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/434 (18%), Positives = 166/434 (38%), Gaps = 80/434 (18%)

Query: 14  NPRDAEIAS--HKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            PRD + A     ++ +T M+ +   KG     P G    +N+          TG   M 
Sbjct: 13  TPRDVDFARWYTDVISKTEMVDYAPVKGFMVIRPYGYAIWENIKEAFDRRFKETGHKNMY 72

Query: 71  VPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSY 125
            P L   + L  E+   + +  E+  +     K +       PT E ++  ++   + SY
Sbjct: 73  FPLLIPESMLQTEAEHVEGFAPEVAWVTRGGGKELGERLAIRPTSETIICSMYSKWLNSY 132

Query: 126 RNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           R LPF + Q    +++    RP    +R+ EFL ++ ++   T E ++    +M   Y  
Sbjct: 133 RQLPFKYNQWCNVVRWEKTTRP---FLRTSEFLWQEGHTLHETEEEARAETMQMLNIYRE 189

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +                                       ++DFM  P+         ++
Sbjct: 190 V---------------------------------------TEDFMAIPM---------VV 201

Query: 244 SLNSIVEQWT---APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              S  E++    A Y   + +H+               + ++ G   Y G  ++     
Sbjct: 202 GQKSEKEKFAGAEATYTIEALMHD--------------GQALQSGTSHYLGQHFTKAFDI 247

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++   + K       S+G+ + R++  +I    D  G++ P  +AP ++ +I + AH   
Sbjct: 248 SYLSRENKQENPYHTSWGV-STRLIGGLIMVHGDDNGLVLPPKIAPIQVVIIPVAAHKPR 306

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A  K+  +L KV      DD     G +F   ++ G P+++ +G + +   +  +  
Sbjct: 307 VAEAAGKLTDQLGKV-FRAELDDSDNSPGWKFNQWEMKGVPIRLEIGPRDLERGECVLAR 365

Query: 421 RLTGIREDMSLEEV 434
           R TG +  +SL+++
Sbjct: 366 RDTGEKTAVSLDDI 379


>gi|295099750|emb|CBK88839.1| threonyl-tRNA synthetase [Eubacterium cylindroides T2-87]
          Length = 391

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 159/414 (38%), Gaps = 53/414 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +++ G+  +LP G    + +     EE  + G   +  P + S +LW  SG ++ Y K
Sbjct: 6   VSEYAPGMPIFLPNGMILRNILEQFWYEEHTKAGYQFIKTPIMMSKELWETSGHWEHY-K 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D+     P +      ++ S + SY+ LP+   ++    R E      G+ 
Sbjct: 65  ENMYTTMVDDREFAIKPMNCPGALLVYNSSLHSYKELPYRIGELGQVHRHEASGALNGLF 124

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F +TP+  +     +     RI+   GL     +  R ESG IG   S
Sbjct: 125 RVRTFTQDDAHLF-VTPDQIESEVKNVLGLIDRIYSVFGLPYDIELSTRPESGYIG---S 180

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++       C     ++ +   +  F                Y    D+H   +
Sbjct: 181 EEIWQKSEEALANA-CIHAGKEYKVNPGDGAF----------------YGPKLDIH---I 220

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
            DSL             G ++  GT     +LP     T+   DG K   V +     G+
Sbjct: 221 KDSL-------------GRVWQCGTIQLDMNLPERFGCTYVDKDGSKKTPVMLHRVIYGS 267

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +     ++     G   +W   +AP +  +I +  H +   +  +K+   L   G  V  
Sbjct: 268 IERFIGILIEHFAGHFPLW---LAPRQFVVIPV--HQEKHLEYAQKVVKALQDAGMRVEL 322

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DD  E++G +   A +   P Q++VG     +  V I+       + M+L E +
Sbjct: 323 DDRNEKLGYRVREAQMSKVPYQIVVGDGEAENETVTIRQSGKKESKTMALNEAL 376


>gi|167464457|ref|ZP_02329546.1| prolyl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 424

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      F   + +  +V   S+G+ + R++ A+I +  D +G+
Sbjct: 168 GKAVQAGTSHYLGTNFAEAFDIKFLNRENQHEFVHTTSWGV-STRLIGAMIMAHGDDRGL 226

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           + P  VAP ++ +I I   K  DQV     E +   + K G  V  D   +  G +F   
Sbjct: 227 VMPPKVAPTQVIMIPIGPAKTRDQVLAKTYE-LQTEIKKAGFRVRVDAREQSPGWKFNEY 285

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
           ++ G P++V +G + + + +V +  R+TG    + +D  +EE+
Sbjct: 286 EMRGVPVRVELGPRDMENGQVILVSRVTGEKKVVAQDNLVEEI 328


>gi|171058428|ref|YP_001790777.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|238689097|sp|B1XYZ3|SYT_LEPCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170775873|gb|ACB34012.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 637

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 160/434 (36%), Gaps = 68/434 (15%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            KY + + +   RD      +L L    I +H+ G+  W P G      V   +R     
Sbjct: 233 QKYLVMLEEAEKRDHRKLGRELDLF--HIDEHAPGVVFWHPKGWTVWQQVEQYMRRVYRD 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+  P +    LW ++G +D Y   M    +++ D A+   P +      IF+  I
Sbjct: 291 NGYQEVKGPQILDKGLWEKTGHWDKYRDNMFTTESEKRDYAL--KPMNCPGHILIFKQGI 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF----DLTPEGSKHSYNKM 177
           KSYR+LP  + +     R+E      G+MR R F   D + F     + PE         
Sbjct: 349 KSYRDLPLRYGEFGQCHRNEPSGGLHGIMRVRGFTQDDGHIFCTEDQILPECD------A 402

Query: 178 FVSYL-RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCS--KDFMDFP 231
           F + L +++   G   I  +  + P   IG D       L D  E  +  S      +F 
Sbjct: 403 FTTLLQKVYADFGFTEILYKVATRPEKRIGSD------ELWDKAEAALIASLRNSGCEFE 456

Query: 232 I-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           I P E   +   +                       L D+L        R  + G I   
Sbjct: 457 ISPGEGAFYGPKVEYT--------------------LKDAL-------GRHWQCGTI--- 486

Query: 291 GTKYSLP--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              +SLP  + A +    G+  H V +    +G++     ++   H G    W   +AP 
Sbjct: 487 QVDFSLPERLDAEYVAESGERLHPVMLHRAILGSLERFIGILIEEHAGALPFW---LAPT 543

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++S++NI        D    +   L K G  V  D   E+I  +     L   P  ++VG
Sbjct: 544 QVSVLNITDGQA---DYARDVARSLQKQGLRVALDLRNEKITYKIREHSLQKVPYLIVVG 600

Query: 408 SKFVSDSKVEIKHR 421
            K  +   V ++ R
Sbjct: 601 DKERASGAVAVRAR 614


>gi|125624939|ref|YP_001033422.1| ThrS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|166223350|sp|A2RN48|SYT_LACLM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124493747|emb|CAL98736.1| ThrS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071738|gb|ADJ61138.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 646

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 168/412 (40%), Gaps = 37/412 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WLP G      +   + +++ + G   +  P + + + + +SG +  Y ++M    
Sbjct: 262 GTAYWLPAGATIRRIIERFVVDQEVKNGYQHVITPVMMNLNTYKQSGHWQHYHEDMYPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D + M   P +      I++ H+ SYR LP    +  +  R E      G+ R RE 
Sbjct: 322 DMGDGEEMELRPMNCPSHIAIYKHHVHSYRELPIRIAEFGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  E  +  ++K+    + ++   G+     R         LS+      D
Sbjct: 382 TLNDGHTF-VMLEQVQEEFSKILQLIMDMYRDFGINDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T  +   D M     +      D + L+ +  E   A Y    D+   ++  +L   
Sbjct: 427 PKDTVKYFPDDEMWEKSQAMLKATMDDMKLDYVEAEGEAAFYGPKLDI---QVKTALGNE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++  +   F   Y         GADG+ H   M   G+ +   R +A +IE  
Sbjct: 484 ETLSTIQLDFLNPENFDISYV--------GADGEKHRPVMIHRGVISTLERFIAYLIEVY 535

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP + ++I +  ++++  D   KI   L   G  V  D+  E++G + 
Sbjct: 536 ---KG-AFPTWLAPTQATIIPV--NNEIHADYAWKIQRELQDKGFRVVVDEANEKMGWKI 589

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +     P Q+++G +  +D  V I+   +   E +  E+ I   S   +N
Sbjct: 590 RQSQTHKIPYQIVIGDQEQADGTVNIRRYGSKETEVIPFEDFIEKISADVAN 641


>gi|56749447|sp|Q7MK65|SYT_VIBVY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 159/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IRE+    G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSVFRDLEVFIREKLTEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +      N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTESQIQDEVTNCIKMVY-DTYQTFGFDNIAVKLSTRPEQRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + + MD                  I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQALESMDIAY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           FD L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 FDCL-------GRAWQCGTV---QLDFNLPNRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D  ++I  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVIMNITDKQA---DYVQEIAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G + +   ++ ++ R         +++ ++Y   + ++
Sbjct: 576 NEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGNDLGKFKVDDFVSYIQDQIAS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|289422357|ref|ZP_06424203.1| threonine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289157192|gb|EFD05811.1| threonine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 641

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/452 (21%), Positives = 177/452 (39%), Gaps = 56/452 (12%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   MI +   G   +LP G     ++     E      
Sbjct: 231 YLKMLEEAKKRDHRKIGKELGLF--MIPEEGPGFPLFLPRGTALKQSLMKYWEEIHREAH 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            +E+  P + +  LW  SG +  Y + M  +  D  D A+   P +       ++S + S
Sbjct: 289 YVEIETPIILNRKLWETSGHWFHYKENMYTVQIDEEDYAI--KPMNCPGAMLYYKSQLHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+ P    +     R EL     G+MR R F   DA+ F + PE  +     +     +
Sbjct: 347 YRDFPMRVGERGRVHRHELSGALHGLMRVRAFTQDDAHIF-MLPEQIRDEIKGVVNLIDK 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G  S  +   + P     + E   +A+ G                 E    D I+
Sbjct: 406 VYTKFGF-SYHVELSTRPEDSMGTDEEWAIAEDGLRGAL------------EELGMDYIV 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--M 298
           +     E   A Y    D H   L D              +G  +  GT      LP   
Sbjct: 453 N-----EGDGAFYGPKIDFH---LRDC-------------IGRTWQCGTIQLDMQLPQRF 491

Query: 299 SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
            AT+ G DG+ H  + +    +G++     ++  ++ GK  +W   +AP ++ ++++   
Sbjct: 492 DATYVGKDGEKHRPIMIHRVALGSIERFIGILIENYAGKFPVW---LAPCQVKVLSVSDK 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +++  ++  EK++      G  V  DD  E++G +   A L   P  ++VG K +    +
Sbjct: 549 YNEFAKELVEKLF----DAGIRVELDDRAEKVGFKIREAQLEKIPYMLVVGEKEMESGLL 604

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++ R  G    MS++E +     +  +   V
Sbjct: 605 SVRSRDEGELGQMSIDEFLAKIKKQIEDRENV 636


>gi|329961279|ref|ZP_08299445.1| threonine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328531944|gb|EGF58761.1| threonine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 646

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 160/432 (37%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q+R    E+  P + +  L++ SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRIRLQDFLRRIQSRYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +      I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S  F +F          D ++ +  +   E W     A  +   EK   
Sbjct: 410 --------VFQSMAFENF---EAQISLRDKVNRDKYIGSDENWEKAEQAIIEACEEKGLK 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + GAD + H  V + 
Sbjct: 459 AKVEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  PD VA   IS        +   D   ++   L
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYALEVKQLL 569

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +       D+  E+IG +    ++   P  ++VG K   + ++ ++ +  G +  M +E
Sbjct: 570 KQYDIRALVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAENKEIAVRKQGEGDQGTMKIE 629

Query: 433 EVINYASHRFSN 444
           E     S    N
Sbjct: 630 EFAKKVSEEVRN 641


>gi|160935092|ref|ZP_02082478.1| hypothetical protein CLOLEP_03968 [Clostridium leptum DSM 753]
 gi|156866545|gb|EDO59917.1| hypothetical protein CLOLEP_03968 [Clostridium leptum DSM 753]
          Length = 660

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 169/453 (37%), Gaps = 68/453 (15%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIR 58
           P+ +E+ +H   +       H+K                G+   LP G + +  +   + 
Sbjct: 238 PKASELTAHLEAMEEAKKRDHNKLGRELGYFTTCDIIGQGLPILLPNGARVIQLLQRFVE 297

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTD 116
           +E+ + G +    P +  +DL+  SG +D Y   M  L D  ++D+     P        
Sbjct: 298 DEEQKRGWLLTKTPYMAKSDLYKLSGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPFQYQ 357

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            + +  +SYR+LP  + +    FR+E      G++R R+F + + +     P+  +  + 
Sbjct: 358 AYLNKKRSYRDLPLRYNETSTLFRNEASGEMHGLIRVRQFTISEGHLM-CRPDQLEEEFK 416

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   +   LGL              D+S+ F       + +   + +  D    + 
Sbjct: 417 SCLQLANYMLETLGLAE------------DVSYRFSQWDPEDKDKYIGTPEQWDEAQSAM 464

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY--FGTK 293
               D +    +I     A Y    D+  + +F      K  +   I++  +    FG +
Sbjct: 465 KRILDHLGIEYAIGVGEAAFYGPKLDIQIKNVF-----GKEDTLITIQIDQLLAEKFGME 519

Query: 294 YSLPMSATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVA 345
           Y          ADGK       H   +G Y     R +A +IE  + G   +W  P+ V 
Sbjct: 520 YV--------DADGKAKNPYIIHRTSIGCY----ERTLALLIE-KYAGALPMWLMPEQVR 566

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
              IS   +    +V R+        L   G     D   E+IG +   A +   P  +I
Sbjct: 567 VLPISEKFLDKALEVDRE--------LKAQGIRSTADSRNEKIGYKIREAQMEKIPYMLI 618

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G K V ++ V ++ R  G+   MSLE  +  A
Sbjct: 619 IGEKEVQENVVSVRSRKDGVLGSMSLETFLEKA 651


>gi|254579094|ref|XP_002495533.1| ZYRO0B13596p [Zygosaccharomyces rouxii]
 gi|238938423|emb|CAR26600.1| ZYRO0B13596p [Zygosaccharomyces rouxii]
          Length = 454

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 180/456 (39%), Gaps = 62/456 (13%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIR-EEQNRTGA 66
           I ++ P  +  ASH++  R  +      S G   +LP G K  + +   ++ ++Q + G 
Sbjct: 22  IAKKPPGSSADASHEVSNRQKLFITDPISPGSIFFLPNGTKIFNKLIQFMKLQQQFKYGF 81

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKS 124
            E+  P +    LW +SG +D+Y ++M R+   +     YG  P +      +F+   +S
Sbjct: 82  KEVVTPLIYRKSLWEQSGHWDNYKEDMFRVEGHDTSKEEYGLKPMNCPGHCMVFKRFDRS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF----V 179
           Y  LP          R+E      G+ R R+F   D + F  TP+  +    K      +
Sbjct: 142 YSELPLRLSDFSPLHRNEASGALSGLTRVRKFHQDDGHIF-CTPDQVESEIAKCLKLVDM 200

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y ++F               P+  +L++E   L  +   + F      D  +     D+
Sbjct: 201 CYTKVF---------------PLSPELANEVYTLELSTRPEHFIG----DVKV----WDY 237

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            + + L +I+ ++  P+        +  F     + +V+    +   +      + LP  
Sbjct: 238 AETV-LKNILNKFGKPWELNE---ADGAFYGPKIDIKVTDHTGKYHQVATIQLDFQLPER 293

Query: 300 ATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              K  D  + Y     +    +G    R +A +I+S+H GK   WP  + P +  +I +
Sbjct: 294 FDLKYKDRDNTYKRPIMIHRAVFG-SVERFMAILIDSNH-GK---WPFWLNPRQAMIIPV 348

Query: 355 KAHDQVCRDACEKIYARLSKVG--------------CDVFWDDMGEQIGSQFAVADLLGF 400
               Q   DAC+ ++ +L   G               +   D+  E +G +   A +  +
Sbjct: 349 NTKRQGQVDACKDLFLKLRGQGNENSTDPIPLNSFHFNADLDERPEPVGYRIKDALMKNY 408

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +I+G K V   +  I+ R     E ++ +E+ N
Sbjct: 409 SYLIIIGDKEVETGRYAIRTREDRQLEHLTDDEIFN 444


>gi|91215264|ref|ZP_01252236.1| threonyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186869|gb|EAS73240.1| threonyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 648

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 161/398 (40%), Gaps = 59/398 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G    D +   +++ Q   G   +  P +   +L++ SG +  YG++  +  
Sbjct: 262 GLPLWLPKGAALRDRLEKFLKDAQENAGYQPVVSPHIGQKELYMTSGHFQKYGEDSFQPI 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              ++ +  +  P +     +I+ +   SYR+LP  + +    +R E      G+ R R 
Sbjct: 322 KTPQDGEEYLLKPMNCPHHCEIYNAQTWSYRDLPQRYAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  TPE     + K+    L +F  LG ++   +              + L 
Sbjct: 382 FTQDDAHIF-CTPEQLDEEFKKVIDLVLYVFGSLGFENFTAQ--------------VSLR 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNS---------IVEQWTAPYAATSDVHNE 265
           D      +   D        EN    +   LN+         IV+   A Y    D    
Sbjct: 427 DPENPSKYIGSD--------ENWKKAESAILNAAEEKGLTYKIVKGEAAFYGPKLDFM-- 476

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM 322
            + D+L        R  ++G I      Y+LP      +KG+D + H  V +     G++
Sbjct: 477 -VKDAL-------GRQWQLGTI---QVDYNLPERFELEYKGSDNEMHRPVMIHRAPFGSL 525

Query: 323 -RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +A +IE +    G  +P  + P + ++++I    +   +  +K+ + L K      +
Sbjct: 526 ERFIAILIEHT----GGNFPLWLMPEQATILSI---SEKYENYSKKVLSLLKKHEIRATF 578

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           D+ GE +G +   A++   P  +IVG   V +  V ++
Sbjct: 579 DNRGETMGKKIREAEMNKTPYMLIVGESEVENETVSVR 616


>gi|294649364|ref|ZP_06726795.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824734|gb|EFF83506.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 640

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 153/418 (36%), Gaps = 60/418 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                L D  E  +  + D         P E   +   I  +                  
Sbjct: 431 ----ALWDIAEKSLADALDDAGLAWDLQPGEGAFYGPKIEFS------------------ 468

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYG 318
             L D L             G ++  GT    ++LP  + A++   D  +D  V +    
Sbjct: 469 --LKDCL-------------GRVWQCGTIQCDFNLPIRLDASYVTEDNERDQPVMLHRAI 513

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G+      ++   + G     P  +AP +  ++NI        DACE++ A+L + G  
Sbjct: 514 LGSFERFIGILIEHYAG---FMPPWLAPIQACVMNITDSQA---DACEQVVAKLKENGLR 567

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 568 AISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSIDAFID 625


>gi|269958355|ref|YP_003328142.1| threonyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848184|gb|ACZ48828.1| threonyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 636

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 9/199 (4%)

Query: 14  NPRDAEIASHKLMLR-TGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +  G  H  ++  G   W   G      +   IR +  + G +E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRTIEEYIRCKLEKHGYLEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + KE + + + + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKF-KENMFVVENDKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELR-PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E     +G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGP---IGGD 205
             S+ ++    P   IG D
Sbjct: 414 FDSVTVKLSDRPENRIGSD 432


>gi|163740958|ref|ZP_02148351.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385949|gb|EDQ10325.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 648

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 12/190 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    +   +R  Q+R G +E++ P +    LW  SG +D Y +
Sbjct: 260 MQEEAPGQIFWHPNGWKIYTTLQDYMRRMQDRDGYVEVNTPQVVDRKLWEASGHWDKYQE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      +F   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEDHAREKAVNALKPMNCPCHVQVFNQGLKSYRDLPLRMAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    S    F+++L +++  LG     ++  + P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CAEDQIESETAKFIAFLSKVYADLGFHDWTIKLSTRPEKR 437

Query: 202 IGGDLSHEFI 211
           IG D S + +
Sbjct: 438 IGSDESWDLV 447


>gi|260425980|ref|ZP_05779959.1| threonyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260420472|gb|EEX13723.1| threonyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 649

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 161/423 (38%), Gaps = 68/423 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G   W P G     ++   +R  Q + G +E++ P + +  LW ESG +++Y +
Sbjct: 260 LQPEAPGQIFWHPNGWTVYTSLQDYMRRMQRKDGYVEVNTPQVVNRKLWEESGHWENYRE 319

Query: 92  EMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEGAREKTINALKPMNCPCHVQIFNHGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAY---SFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP 201
             G+MR R F   DA+   +FD   E SK      F+ +L +I+  LG  S  ++  + P
Sbjct: 380 LHGIMRVRGFTQDDAHIFCTFDQIEEESKK-----FIDFLAKIYADLGFDSWRVKLSTRP 434

Query: 202 ---IGGDLSHEFI--VLADTGETQVFCSKDFMDFPI-PSENTDFD---DIISLNSIVEQW 252
              +G + S + +   LA+       C     +F I P E   +    + +  ++I   W
Sbjct: 435 EKRVGSEESWDSMEEALANA------CKAAGREFEIFPGEGAFYAPKLEFVLTDAIGRDW 488

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY- 311
                        +L  +LPE                        + A + G DG+ H  
Sbjct: 489 QCGTL--------QLDPNLPER-----------------------LDANYVGQDGEKHRP 517

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + +    +G+      ++   H GK   W   +AP ++ + +I +      D   +  A 
Sbjct: 518 IMLHRAVLGSFERFIGILIEEHSGKLPFW---LAPRQVVVASITSE---ADDYVHEAVAA 571

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G     D   E+I  +     L   P+ + VG + V +  V ++       +  SL
Sbjct: 572 LRAAGVRAEADVRNEKINYKVREHSLGKVPVILAVGHREVEERTVTVRRLGEKQTQVRSL 631

Query: 432 EEV 434
           +E+
Sbjct: 632 DEI 634


>gi|163737374|ref|ZP_02144791.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161388900|gb|EDQ13252.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 648

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 12/190 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    +   +R  Q+R G +E++ P +    LW  SG +D Y +
Sbjct: 260 MQEEAPGQIFWHPNGWKIYTTLQDYMRRMQDRDGYVEVNTPQVVDRKLWEASGHWDKYQE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      +F   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEDHAREKAVNALKPMNCPCHVQVFNQGLKSYRDLPLRMAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    S    F+++L +++  LG     ++  + P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CAEDQIESETAKFIAFLSKVYADLGFHDWTIKLSTRPEKR 437

Query: 202 IGGDLSHEFI 211
           IG D S + +
Sbjct: 438 IGSDESWDLV 447


>gi|120437069|ref|YP_862755.1| prolyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|152112923|sp|A0M4Z3|SYP_GRAFK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117579219|emb|CAL67688.1| prolyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 492

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +G   +V   S+G+ + R++ A+I +  D  G+
Sbjct: 234 GKALQAGTSHFLGQNFAEAFDVKFATKEGGLEHVWATSWGV-STRLMGALIMTHSDDNGL 292

Query: 339 IWPDSVAPFKISLINI----KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFA 393
           + P ++AP ++ ++ I    +  DQ+   A E +   L  VG  V +D+   Q  G +FA
Sbjct: 293 VLPPNLAPIQVVIVPIYRSEEQLDQISEVANE-LVKELRAVGVSVKFDNNDNQKPGWKFA 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +L G PL++ +G K +    VE+  R T  +E ++  EV+
Sbjct: 352 QYELQGVPLRLAIGPKDLEKGTVELARRDTLTKEFVNRSEVV 393



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  GK M+    + ++ ++  PT E ++ + +++ I+SYR+LP    Q     R E+R R
Sbjct: 102 DKPGKLMVDPDAKLEEELVVRPTSEAIIWNTYKNWIQSYRDLPIKVNQWANVVRWEMRTR 161

Query: 147 FGVMRSREFLMKDAYSFDLT 166
              +R+ EFL ++ ++   T
Sbjct: 162 L-FLRTAEFLWQEGHTAHAT 180


>gi|319902090|ref|YP_004161818.1| prolyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319417121|gb|ADV44232.1| prolyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 497

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  + ++     EK   I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNAEMLSKIDEKVAGIVAKLKSMGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++ G P+++++G + + +S +E+  R T  +E  S E +  Y
Sbjct: 355 YEVKGVPVRLVMGGRDLENSTMEVMRRDTLEKETRSCEGIEEY 397



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|295135607|ref|YP_003586283.1| prolyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294983622|gb|ADF54087.1| prolyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 492

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 155/358 (43%), Gaps = 75/358 (20%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           ++ GK ++  A + ++ ++  PT E V+ + +++ I+SYR+LP    Q     R E    
Sbjct: 102 ENKGKLIVDPAAKLEEELVVRPTSEAVIWNTYKNWIQSYRDLPILINQWANVVRWE---- 157

Query: 147 FGVMRSREFLMKDAYSFDLTPEG-SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
              MR+R FL    +   L  EG + H+  +  ++          +++ M         D
Sbjct: 158 ---MRTRLFLRTSEF---LWQEGHTAHATRQEALA----------ETMQM--------ND 193

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPI----PSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +  EF+             ++FM  P+     +EN  F                 A   +
Sbjct: 194 IYAEFV-------------ENFMATPVIKGAKTENERF-----------------AGAEE 223

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +     ++L ++     + ++ G   + G  ++      F   +G   +V   S+G+ +
Sbjct: 224 TY---CIEALMQD----GKALQAGTSHFLGQNFAKAFDVKFATKEGGLEHVWATSWGV-S 275

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCD 378
            R++ A++ +  D KG++ P  +AP ++ ++ I K+ +Q+    D    +   L   G  
Sbjct: 276 TRLMGALVMTHSDDKGLVLPPKLAPIQVVIVPIYKSEEQLDQISDVANGLVKDLRAKGIS 335

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           V +D+    + G +FA  +L G P+++ +G K +    VE+  R T  +E + ++ V+
Sbjct: 336 VKFDNRDTHKPGWKFAQYELQGVPVRLAIGPKDIEKGTVELARRDTLTKEFVEMDGVV 393


>gi|227827828|ref|YP_002829608.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|229585098|ref|YP_002843600.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259511620|sp|C3N6D0|SYP_SULIA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511623|sp|C3MW88|SYP_SULIM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227459624|gb|ACP38310.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|228020148|gb|ACP55555.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 481

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++  + +V    +++G + + G  +S  +    +  DG   Y    SYGI   R +A+
Sbjct: 215 FDTIMPDGKV----MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSYGISD-RAIAS 269

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWD 382
           VI    D  G I P SVAP K+ ++ I A +     QV + + E I   L+K       D
Sbjct: 270 VIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSVE-ICEMLNKNNITCVTD 328

Query: 383 DMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              E+  G +F + ++ G P+++ +G + ++ S V IK R       +  EEV+N
Sbjct: 329 QDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKEEVVN 383



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLS 78

Query: 82  -ESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +    ++  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAI 193


>gi|227892831|ref|ZP_04010636.1| theronyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227865333|gb|EEJ72754.1| theronyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 645

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 160/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYDHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      IF+ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQDEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTEKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      EK+   L+K G     DD  E++G +
Sbjct: 534 KGAFPTW---LAPIQAEIIPVNNEAHGEY----AEKVRQELAKRGFRAEVDDRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G   +   KV ++   T      SL++ I 
Sbjct: 587 IRESQTQKVPYTLVLGDDEMKSGKVNVRRYGTDEEISKSLDDFIK 631


>gi|291320056|ref|YP_003515314.1| prolyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752385|emb|CBH40356.1| Prolyl tRNA synthetase (Proline tRNA ligase) [Mycoplasma
           agalactiae]
          Length = 478

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y    +S     +FK    +D +V   S+G+ + R++ A+I +  D +GI
Sbjct: 221 GKALQAGTSHYLAQNFSKKFEISFKNDKNEDEFVYQTSWGV-STRLLGAIIMTHGDNRGI 279

Query: 339 IWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P  VAP ++ ++ + A+ Q    D C ++  +L +    V  D   +  G + + +++
Sbjct: 280 IIPPKVAPVQVDILELFANKQPKVHDFCNELAKQLER-KFRVRLDSTDKSPGYKASNSEI 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G PL++ VG K + +  V I  R T  +  +S+ +V
Sbjct: 339 QGVPLRIEVGPKDLENKTVTIVRRDTLEKTMVSVSDV 375


>gi|206603264|gb|EDZ39744.1| Threonyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 617

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 159/403 (39%), Gaps = 44/403 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +   G+  WLP G +    +  + +   +R G   +  P +   DLW++SG +D Y  
Sbjct: 228 LDEKGAGLVLWLPKGSQIRRTLEELWKILHDRHGYRYVYTPHIARLDLWMQSGHWDYYQD 287

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M R  +    A    P +      IFR  ++SYR+LP    ++   +R E      G+M
Sbjct: 288 SMFRPMETEGTAYELKPMNCPFHILIFRESVQSYRDLPIRLSELGTVYRYERSGTLHGLM 347

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F   PE        +     ++  R G     +   + P   +G D +
Sbjct: 348 RVRGFTQDDAHIF-CKPEDLAGEIRNVLALVDQMIGRFGFTDRTVYLSTRPEKSVGSDEN 406

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      TG  +    K   +  IP E    + +             Y    D+   K 
Sbjct: 407 WEMA----TGSLR----KALEESGIPYEVDPGEGVF------------YGPKIDI---KF 443

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVA 326
            D++    ++S   ++    F    K+ L    T++   G+     M    + G++    
Sbjct: 444 HDAIGRAWQLSTIQVD----FNLPEKFDL----TYRNDSGEPCRPIMIHRALFGSIERFF 495

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + G   +W   +AP ++ ++ I A   +     + + +RL   G     D   E
Sbjct: 496 GILIEHYAGAFPLW---LAPEQVRIMTI-ADRHI--PYAQTVLSRLKDRGVRAEGDFRNE 549

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +IG +   A +   P   +VG + V +++V ++ R  G ++D+
Sbjct: 550 KIGFKVREAQMEKIPEMWVVGDREVEETRVSVRSR-EGEKKDL 591


>gi|182679322|ref|YP_001833468.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635205|gb|ACB95979.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 644

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 5/177 (2%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G   W P G      + + +R  Q   G +E++ P +    LW  SG + +Y + 
Sbjct: 257 QEEGPGTVFWHPKGWTLFQTLISYMRRRQQEAGYVEVNTPQVLDRALWETSGHWSTYREN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      +++     P +      IF++ +KSYR+LP    +  +  R E      GVMR
Sbjct: 317 MFITTTEDERVFALKPMNCPGHVQIFKNGLKSYRDLPLKIAEFGVVHRYEPSGALHGVMR 376

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            R F   DA+ F  T +       K+    L I+   G + I ++  + P   +G D
Sbjct: 377 VRAFTQDDAHIF-CTEDQIMDEVLKINDLILSIYRDFGFEDIVIKLSTRPEKRVGSD 432


>gi|15807075|ref|NP_295804.1| threonyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|22654147|sp|Q9RSP3|SYT_DEIRA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6459875|gb|AAF11630.1|AE002044_3 threonyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 649

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/395 (20%), Positives = 151/395 (38%), Gaps = 48/395 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G    + +   ++E+Q + G   +  P + + DL+  SG Y  Y +    
Sbjct: 266 GKGLPLWLPNGTVLREELTNFMKEQQFQRGYQGVVTPNIGNLDLYRTSGHYPYYSESQFN 325

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +++  +  P +      I+ S  +SYR+LP    +    +R E      G+ R R 
Sbjct: 326 PIQVDEEEYMLKPMNCPHHVRIYASKPRSYRDLPVRLAEFGTVYRYEQSGELNGLTRVRG 385

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHE 209
           F   DA+ F   P+  K  +  +    + +    G+  +  R      ES    GD  + 
Sbjct: 386 FTQDDAHIF-CRPDQLKREFLDVLDLTVLVLKTFGMTDVRFRVGVRDPESDKYVGDEQNW 444

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +      E Q+  + + +  P   E  D               A Y    D        
Sbjct: 445 ALA-----ERQIIEAVEEVGLPYTIEPGD--------------AAFYGPKLDF------- 478

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                K V  R  ++G I      Y+LP     ++ G DG++H  + +     G++    
Sbjct: 479 ---VVKDVLGREWQLGTI---QVDYNLPERFDISYTGEDGQEHRPIMIHRAPFGSIERFT 532

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + G   +W   +AP ++ +I I           E++   L + G     DD   
Sbjct: 533 GILIEHYAGDFPLW---LAPRQVMIIPIADRHNAY---AEELREELHRAGLRAEVDDSSN 586

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++ ++   A+L   P+ +IVG K     +V ++ R
Sbjct: 587 RMQAKVRDAELHKIPVMLIVGDKEQEAREVSVRER 621


>gi|71898248|ref|ZP_00680422.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
 gi|71731987|gb|EAO34044.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
          Length = 635

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 156/422 (36%), Gaps = 48/422 (11%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +DAE   H+ + +      + +   G+  W P G      +   IR     +G  E+  P
Sbjct: 238 QDAEKRDHRKIGKAQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSGYGELRCP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +    LW +SG +D+Y KE +   D   +     P +      +F   + SYR+LP  +
Sbjct: 298 QILDVSLWQKSGHWDNY-KENMFFTDSEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRY 356

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R+E      G++R R F   D + F  T    +          L+++   G +
Sbjct: 357 GEFGACHRNEPSGALHGLLRVRGFTQDDGHIF-CTEAQIEAEVTAFHRQALQVYADFGFE 415

Query: 192 SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +I ++    P   +G  LS +    A        C  ++ + P                 
Sbjct: 416 NIQIKIALRPDKRLGDSLSWDKAEAALRSALSA-CEVEWQELPGEG-------------- 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    + H   L D++    ++    ++       G +Y    S        +
Sbjct: 461 -----AFYGPKIEYH---LKDAIGRTWQLGTIQVDFMMPGRLGAEYVDERSQ-------R 505

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            H V +    +G+M     ++   + G   IWP  +AP ++ + NI        +  E++
Sbjct: 506 RHPVMLHRAIVGSMERFIGILIEHYAG---IWPTWLAPVQVVIANIT---DAQYEYAEQV 559

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  L   G  V  D   E+IG +     L   P  ++VG +   +  V ++   T  RED
Sbjct: 560 HKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVAVR---TCSRED 616

Query: 429 MS 430
           + 
Sbjct: 617 LG 618


>gi|110005463|emb|CAK99785.1| prolyl-trna synthetase protein [Spiroplasma citri]
          Length = 474

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  +S      F        Y    S+G+ + R++  +I +  D  G+
Sbjct: 222 GQALQCGTSHYFGQNFSKAFDIKFANQKNTLEYAYSTSWGV-STRLIGGIIMTHSDDNGL 280

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +I ++ I         A +++  +L K  C++   D G   G +   A++ 
Sbjct: 281 VLPPQIAPIQIMILPINNDSNEQLSAAQQLQKKLQKYRCEIDQSDKG--FGFRATNAEIK 338

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ +G + ++  +V I  R T  +  +S  EV
Sbjct: 339 GIPLRIEIGPRDLAQQQVTIARRDTFEKITVSWAEV 374



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 14/164 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  +N+  I+  E  + G   +  P L    L+  E    + +  E+  
Sbjct: 35  KGTTIFKPYGYEIWENIQKILDAEFKKNGVKNVYFPLLIPKTLFNKEKEHIEGFSPEIAT 94

Query: 96  LADRNDKAM---IY-GPTHEEVMTDIFRSHIKSYRNLPFTFYQI--QLKFRDELRPRFGV 149
           +    DK +   +Y  PT E +    F   I+ YR+LP  + Q    L++    RP    
Sbjct: 95  VTKVGDKVLDEELYIRPTSEVLFGTFFSKEIQGYRDLPLLYNQWVNVLRWEKTTRP---F 151

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +R+ EFL ++ +    T   SK    +  +  L I+     K++
Sbjct: 152 LRTSEFLWQEGH----TIHSSKQEAQQFTLKILDIYATFAEKTL 191


>gi|258543038|ref|YP_003188471.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634116|dbj|BAI00092.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637176|dbj|BAI03145.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640228|dbj|BAI06190.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643285|dbj|BAI09240.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646340|dbj|BAI12288.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649393|dbj|BAI15334.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652379|dbj|BAI18313.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655437|dbj|BAI21364.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 645

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 167/433 (38%), Gaps = 57/433 (13%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + +  G+ H  + + G   W   G +    +   +R  Q R G  E+  P 
Sbjct: 240 EAEKRDHRRIGKEMGLFHFQEEAVGQVFWHAKGWRLYTALQDYMRRAQTRHGYQEVRTPQ 299

Query: 74  LQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG +D Y   M +   +  +K +   P +      IFR  ++SYR LP   
Sbjct: 300 LVDRALWEASGHWDKYRHHMFIATVEDENKTLALKPMNCPCHVQIFRHGLRSYRELPLRM 359

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGL 190
            +     R E      G+MR R F   DA+ F    E         FV  L  ++  LG 
Sbjct: 360 AEFGACHRYEPSGALHGLMRVRGFTQDDAHIF--CTEDQIADETVRFVKMLHDVYQDLGF 417

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFD---DIISLN 246
           + + ++    P     S E    A+    +  C+   +++   P E   +    + +  +
Sbjct: 418 EHVRVKFADRPEQRAGSDEVWDKAENALKEA-CTVAGVEYEHNPGEGAFYGPKLEFVLRD 476

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +I   W         V        LPE                        + A++ G D
Sbjct: 477 AIGRDWQCGTLQVDLV--------LPER-----------------------LDASYIGED 505

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA- 364
            G+   V +    +G+      ++   H G+  +W   +AP ++ + +I +      DA 
Sbjct: 506 SGRHRPVMLHRAILGSFERFLGILIEQHAGRFPLW---LAPVQVVVASIVS------DAA 556

Query: 365 --CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++ A L + G  V  D   ++I ++     +   P+ ++VG +   +  V ++   
Sbjct: 557 PYAEEVAAALREAGLAVEADVRNDKINAKVREHSVARVPVILVVGRREAEERTVAMRRLG 616

Query: 423 TGIREDMSLEEVI 435
           T ++E +SL++ +
Sbjct: 617 TQVQETLSLDDAV 629


>gi|189465935|ref|ZP_03014720.1| hypothetical protein BACINT_02298 [Bacteroides intestinalis DSM
           17393]
 gi|189434199|gb|EDV03184.1| hypothetical protein BACINT_02298 [Bacteroides intestinalis DSM
           17393]
          Length = 497

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  + ++ +   EK   I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNAEMLQKIDEKVAGIVAKLKSMGVSVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G + + ++ +E+  R T  +E  S + +  Y
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEY 397



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVMRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLT 166
           ++   T
Sbjct: 177 HTAHAT 182


>gi|228997455|ref|ZP_04157073.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229005099|ref|ZP_04162823.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228756201|gb|EEM05522.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228762288|gb|EEM11216.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 641

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + + +RE Q      E+  P + +  LW ESG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIVRNELESFLREIQQNYDYQEVRTPIMMNQGLWEESGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D Y K+ +  ++ ++K+    P +      IF++ + SYR+LP    +     R E    
Sbjct: 314 DHY-KDNMYFSEVDNKSFALKPMNCPGHMLIFKNKLHSYRDLPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|330752678|emb|CBL88143.1| prolyl-tRNA synthetase [uncultured Cytophagia bacterium]
          Length = 491

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   +  F   +GK+  V   S+G+ + R++ A+I +  D  G+
Sbjct: 233 GKALQAGTSHFLGQNFAKAFNVKFTNKEGKEDLVWGTSWGV-STRLMGALIMAHSDDDGL 291

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDA--CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P ++AP ++ +I I K  +Q+ R A   EKI   L   G  V +D     + G +FA 
Sbjct: 292 VLPPNLAPIQVVIIPIYKGEEQLERIALKVEKIRNSLISKGISVKFDRRDTHKPGWKFAE 351

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            +L G PL++ +G K + +  +EI  R T
Sbjct: 352 YELKGVPLRIAIGPKDLDNGTLEIARRDT 380



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 85  RYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           + D  GKE++   D + +  +I  PT E V+ D +++ I+SYR+LP    Q     R E+
Sbjct: 98  KNDENGKELIVDPDAKLEDELIVRPTSETVIWDTYKNWIQSYRDLPLLINQWANVIRWEM 157

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           R R   +R+ EFL ++ ++   T E +     +M   Y
Sbjct: 158 RTRL-FLRTTEFLWQEGHTAHATQEEAILETQQMLEVY 194


>gi|322382352|ref|ZP_08056259.1| prolyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153705|gb|EFX46080.1| prolyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 481

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      F   + +  +V   S+G+ + R++ A+I +  D +G+
Sbjct: 225 GKAVQAGTSHYLGTNFAEAFDIKFLNRENQHEFVHTTSWGV-STRLIGAMIMAHGDDRGL 283

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           + P  VAP ++ +I I   K  DQV     E +   + K G  V  D   +  G +F   
Sbjct: 284 VMPPKVAPTQVIMIPIGPAKTRDQVLAKTYE-LQTEIKKAGFRVRVDAREQSPGWKFNEY 342

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
           ++ G P++V +G + + + +V +  R+TG    + +D  +EE+
Sbjct: 343 EMRGVPVRVELGPRDMENGQVILVSRVTGEKKVVAQDNLVEEI 385


>gi|251777990|ref|ZP_04820910.1| threonine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082305|gb|EES48195.1| threonine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 643

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 150/391 (38%), Gaps = 38/391 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K +  +   I +E+ R G +    P +  +DL+  SG +D Y   M  L
Sbjct: 259 QGLPLLMPKGAKIVQTLQRWIEDEEERRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D      ++   P        I+ +   SYR+LP  + +    FR+E      G++R R
Sbjct: 319 GDEEKDEEVFALRPMTCPFQYTIYNAEQHSYRDLPIRYGETSTLFRNESSGEMHGLIRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F + D +   +TPE  +  +  +      I   LG            I  D+S+ F   
Sbjct: 379 QFTLADGHLI-VTPEQLEEEFKGVLELIKYIMKTLG------------IDEDISYRFSKW 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNEKLFDS 270
            D   T+ + +        P       D  ++ +I++     Y    D    +  KL D 
Sbjct: 426 -DPNNTEKYIND-------PDAWNKTQD--TMRTILDHLKIDYVEADDEAAFYGPKL-DL 474

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             +N       I    I  F       MS   K  + K  Y+   S  IG      A++ 
Sbjct: 475 QFKNVHGKEDTIITLQI-DFALAERFDMSYIDKNGEKKRPYIIHRS-SIGCYERTLAMLI 532

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G    W   ++P ++ ++ I        D  E +   L   G  +  D   E+IG 
Sbjct: 533 EKYAGAFPTW---LSPVQVKVLPISDK---YNDYAESVVKSLRNKGVRIEADYRAEKIGY 586

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   A L   P  ++VG K  ++S+V ++ R
Sbjct: 587 KIREARLERTPYILVVGEKEAANSEVSVRSR 617


>gi|330834508|ref|YP_004409236.1| threonyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566647|gb|AEB94752.1| threonyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 562

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 157/396 (39%), Gaps = 56/396 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P GQ   + + + +RE  +  G  E+    +    LW  SG YD+Y  +ML + 
Sbjct: 176 GLVLFHPKGQLIRNEMISYMREINSSMGYQEVYTSHVFRTVLWKISGHYDTYRDKML-IF 234

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFL 156
           +++D  +   P +      I++S ++SYR+LP  F +    +R E +   +G++R+R F 
Sbjct: 235 NKDDDELGIKPMNCPAHILIYKSRVRSYRDLPLRFSEFGNVYRWEKKGELYGLLRTRGFT 294

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-----SGPIGGDLSHE-- 209
             D + F L  +  +     +    L + ++ G +   +R          IG D   E  
Sbjct: 295 QDDGHIF-LREDQIRDEVKTLINKTLEVLNKFGFRGDDVRINLSTRPDESIGSDEQWEKA 353

Query: 210 ----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                 VL + G TQ    +    F  P    DFD   SLN    +W        D +  
Sbjct: 354 TNSLLNVLKELG-TQFIIKEKEGAFYGPK--IDFDIRDSLN----RWWQLSTIQVDFN-- 404

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                LPE                F  +Y         G+  +   +    YG    R++
Sbjct: 405 -----LPER---------------FKLEY-----VDEDGSKKRPVMIHRAIYG-SLDRMI 438

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A ++E    G+   W   ++P ++ ++ I   +Q   +   KI   L + G     D  G
Sbjct: 439 AILLEHFR-GRLPAW---LSPVQVRILPISEENQ---EYANKILVMLRENGIRGELDPSG 491

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E +  +   A   G P  VIVG K   + KV I+ R
Sbjct: 492 ETLSKRIKRAYDEGVPYLVIVGRKEALEEKVTIRSR 527


>gi|15837338|ref|NP_298026.1| threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|22654146|sp|Q9PFE2|SYT_XYLFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9105624|gb|AAF83546.1|AE003915_11 threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 635

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 151/434 (34%), Gaps = 72/434 (16%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +DAE   H+ + +      + +   G+  W P G      +   IR     +G  E+  P
Sbjct: 238 QDAEKRDHRKIGKVQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSGYGELRCP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +    LW +SG +D+Y KE +   D   +     P +      +F   + SYR+LP  +
Sbjct: 298 QILDVSLWQKSGHWDNY-KENMFFTDSEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRY 356

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R+E      G++R R F   D + F                S +  FHR  L 
Sbjct: 357 GEFGACHRNEPSGALHGLLRVRGFTQDDGHIF---------CTEAQIESEVTAFHRQAL- 406

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENTDFDDIISLNSI 248
                                       QV+    F D  I      +    D +S +  
Sbjct: 407 ----------------------------QVYADFGFEDIQIKIALRPDKRLGDSLSWDKA 438

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE------VGHIFYFGTKYSLPMSATF 302
                A  +A      E  +  LP         IE      +G  +  GT     M    
Sbjct: 439 EAALRAALSAC-----EVEWQELPGEGAFYGPKIEYHLKDAIGRTWQLGTIQVDFMMPGR 493

Query: 303 KGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            GA+  D      H V +    +G+M     ++   + G   IWP  +AP ++ + NI  
Sbjct: 494 LGAEYVDERSQRCHPVMLHRAIVGSMERFIGILIEHYAG---IWPTWLAPVQVVVANIT- 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  E+++  L   G  V  D   E+IG +     L   P  ++VG +   +  V
Sbjct: 550 --DAQYEYAERVHKALLNQGFRVNTDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTV 607

Query: 417 EIKHRLTGIREDMS 430
            ++   T  RED+ 
Sbjct: 608 AVR---TCSREDLG 618


>gi|119357673|ref|YP_912317.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|152016595|sp|A1BHL6|SYP_CHLPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119355022|gb|ABL65893.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 481

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++ ++ G     G  ++      F+  DGK  YV   S+G+ + R++ A+I +  D +G+
Sbjct: 219 SKALQAGTSHNLGQNFAKAFDCQFQTRDGKLDYVWATSWGV-STRLIGALIMAHSDDRGL 277

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  +A  ++ +I I   D+     CEK +A    LS  G   F DD  +   G +FA 
Sbjct: 278 VLPPKLATRQVVIIPILKGDKAA--VCEKAHAISRTLSANGIPAFVDDSEQNSPGWKFAE 335

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +L G PL++ +G + + +    +  R T  + +++L++ ++
Sbjct: 336 YELQGIPLRIELGPRDIQNGTCIVARRDTLEKTELALDDTLS 377



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TP
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATP 166

Query: 168 EGSKHSYNKMFVSY 181
           E S+    +M   Y
Sbjct: 167 EESQEEVVRMINVY 180


>gi|302335586|ref|YP_003800793.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Olsenella uli
           DSM 7084]
 gi|301319426|gb|ADK67913.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Olsenella uli
           DSM 7084]
          Length = 588

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +   G   WLP G +  + +    +E Q+R G  ++  P + S  LW  SG +D Y 
Sbjct: 207 MMSEAGPGFPFWLPNGMRVRNALMDYWQEMQDRFGYEQVQTPIILSRTLWETSGHWDHY- 265

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           K+ +     +D+     P +      +++S  +SYR+LP    +  L  R EL+    G+
Sbjct: 266 KDNMYTTQIDDEDFAIKPMNCPGACLVYKSKPRSYRDLPLKLAEAGLDHRHELKGALHGL 325

Query: 150 MRSREFLMKDAYSF 163
            R REF   DA+ F
Sbjct: 326 FRVREFTQDDAHLF 339


>gi|166032032|ref|ZP_02234861.1| hypothetical protein DORFOR_01734 [Dorea formicigenerans ATCC
           27755]
 gi|166028485|gb|EDR47242.1| hypothetical protein DORFOR_01734 [Dorea formicigenerans ATCC
           27755]
          Length = 643

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 171/438 (39%), Gaps = 54/438 (12%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 230 YLTMLEEAKKRDHRKLGKELGLF--MMCEEGPGFPFFLPKGMVLKNTLLDYWRELHKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            +E+S P + S  LW  SG +D Y + M     D  D A+   P +      ++++  +S
Sbjct: 288 YVEVSTPIILSRHLWETSGHWDHYKENMYTTQIDGEDYAI--KPMNCPGGMLVYKAEPRS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP    ++ L  R E   +  G+MR R F   DA+ F + PE  +     +      
Sbjct: 346 YKDLPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MMPEQIRDEIKGVVALIDE 404

Query: 184 IFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++   G K    +  R E+  +G D   E   LA  G                       
Sbjct: 405 VYSLFGFKYHVELSTRPENS-MGTDEDWE---LATEGLRGALND---------------- 444

Query: 241 DIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             + L+ +V +   A Y    D H   L DS+    +     +++     F  +Y+    
Sbjct: 445 --LGLDYVVNEGDGAFYGPKIDFH---LTDSIGRTWQCGTIQLDMQLPQRFELEYT---- 495

Query: 300 ATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               GADG+ H  + +     G++ R +  +IE         +P  +AP ++ ++ I   
Sbjct: 496 ----GADGEKHRPIMIHRVAFGSIERFIGILIEHFAGA----FPTWLAPVQVKVLPISDK 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+   L+  G     D   E+IG +   A +   P  ++VG K      V 
Sbjct: 548 ---YMDYANKVLDELNAAGVRAEVDSRAEKIGYKIREAQMQKIPYMLVVGEKEQEADLVS 604

Query: 418 IKHRLTGIREDMSLEEVI 435
           ++ R  G     +LE  I
Sbjct: 605 VRSRFAGDEGQKNLETFI 622


>gi|149182619|ref|ZP_01861089.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849697|gb|EDL63877.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 476

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 130/334 (38%), Gaps = 72/334 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  + +++ I SYR+LP  + Q    +++    RP    +R+ EFL ++ ++   
Sbjct: 112 PTSEVLFGEHYKNIIHSYRDLPKLYNQWANVVRWEKTTRP---FLRTLEFLWQEGHTCHE 168

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     KM   Y  +     + +IP                ++     E + F   
Sbjct: 169 TDEEAHEETVKMLEVYAELCE--NILAIP----------------VIKGQKTEKEKFAGA 210

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
            +                            Y   S +H+ K   S              G
Sbjct: 211 KYT---------------------------YTIESLMHDGKALQS--------------G 229

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              + G  ++      F   +G   YVQ  S+G    R++ A+I    D +G++ P   A
Sbjct: 230 TSHHLGDGFAKAFGIQFSDREGNLQYVQQTSWGF-TTRIIGAMIMVHGDDRGLVIPPKAA 288

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           P ++ ++ I  H +   D    +  RL+   +VG D       ++ G +F   ++ G PL
Sbjct: 289 PTQLMIVPIAQHKEGVLDFAYNLKERLAGSFRVGIDA----SDKKPGWKFNEYEMKGIPL 344

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++  G + + +++V I  R TG +  + L+E+ N
Sbjct: 345 RLEAGPRDIENNQVVIARRDTGDKVTVGLDELEN 378


>gi|160900048|ref|YP_001565630.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|238687213|sp|A9C3D4|SYT_DELAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160365632|gb|ABX37245.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 643

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 145/388 (37%), Gaps = 50/388 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 259 IDEHSPGTVFWHPKGWSLWQEVEQYMRRVYRDNGYQEVKGPQILDKTLWEKTGHWDKYRE 318

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    +++ D A+   P +      IF+  IKSYR+LP  + +     R+E      G+
Sbjct: 319 NMFTTESEKRDYAL--KPMNCPGHILIFKQGIKSYRDLPLRYGEFGQCHRNEPTGGLHGI 376

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGD 205
           MR R F   D + F    E         F + L +++   G   I  +  + P   IG D
Sbjct: 377 MRVRGFTQDDGHVF--CTEDQIQPEVLAFTTLLQKVYADFGFSDIIYKVATRPEARIGSD 434

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S       D  E  +  S          E +  + +IS                  +  
Sbjct: 435 ESW------DKAEAALINS---------LEASGCEYVIS------------PGDGAFYGP 467

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM 322
           K+  +L   K    R  + G I      +S+P  + A + G DG  H  V +    +G++
Sbjct: 468 KIEYTL---KDAIGRQWQCGTI---QVDFSMPERLDAEYVGEDGDRHRPVMLHRAIVGSL 521

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFW 381
                ++   H G    W   +AP + +++NI  A     R+  +K+       G  V  
Sbjct: 522 ERFIGILIEQHAGAMPTW---LAPVQAAVLNITDAQADYVREVAQKLQKAFPNQGLRVAT 578

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           D   E+I  +     L   P  ++ G K
Sbjct: 579 DLRNEKITYKIREHSLQKLPYILVAGDK 606


>gi|53805116|ref|YP_113204.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|73919805|sp|Q60AZ3|SYT_METCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53758877|gb|AAU93168.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 638

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R      G  E+  P + +  LW  SG ++ +  
Sbjct: 255 MQEEAPGMVFWHPKGWILWQEIEQYMRRVFRDNGYQEIRTPLVVARTLWERSGHWEKFSD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           EM   A       I  P +      ++   +KSYR+LP    +     R+EL     G+M
Sbjct: 315 EMFTTASEERDYAI-KPMNCPCHVQVYNQGLKSYRDLPLRLAEFGSCHRNELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   ++      +++   G   + ++  + P     S E 
Sbjct: 374 RVRGFTQDDAHIF-CTEEQIQDEVSRFIDLLFKVYADFGFSEVQIKLSTRPEKRVGSDEV 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+        +K       P E   +   I  +                    L D 
Sbjct: 433 WDKAEHALETALNAKGLAWDLQPGEGAFYGPKIEFS--------------------LKDC 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G I      +S+P  + AT+   DG  H   M    I G++     
Sbjct: 473 LD-------RVWQCGTI---QVDFSMPDRLGATYVAEDGARHVPVMLHRAILGSLERFVG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G+  +W   +AP +  ++NI        D   ++       G  V  D   E+
Sbjct: 523 ILTEHYAGQYPLW---LAPVQAVVLNITDRQA---DYAREVAQEFVSKGFRVIADLRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +G +     +   P  +IVG K V    V ++ R
Sbjct: 577 VGFKIREHSMQRVPYLLIVGDKEVEAGSVSLRTR 610


>gi|57867165|ref|YP_188820.1| threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811076|ref|ZP_04825549.1| threonyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875897|ref|ZP_06284764.1| threonine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|71153576|sp|Q5HNM1|SYT_STAEQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57637823|gb|AAW54611.1| threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805411|gb|EES58068.1| threonyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294922|gb|EFA87449.1| threonine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 645

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 168/407 (41%), Gaps = 45/407 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M   +
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAM 321

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
               D+AM+  P +      I+++   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDEDEAMVLRPMNCPHHMMIYKNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++      ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIQDVYKDFGFEDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP 272
             +   +   D M     S   +  D + L    +I E   A Y    DV   ++  ++ 
Sbjct: 427 PEDKHKYFDDDEMWEKAESMLKEASDELGLTYEEAIGE--AAFYGPKLDV---QVKTAMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E
Sbjct: 482 KEETLSTAQLD----FLLPERFDL----TYIGQDGEQHRPVVIHRGVVSTMERFVAFLTE 533

Query: 331 SSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   KG  +P  +AP ++ +I  NI  H     D    +   L   G  V  DD  E++
Sbjct: 534 ET---KG-AFPTWLAPMQVEIIPVNIDLH----YDYARLLQDELKSQGVRVEIDDRNEKM 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A +   P Q++VG + V + +V ++   +  +E +  +E I
Sbjct: 586 GYKIREAQMKKIPYQIVVGDQEVENQEVNVRKYGSEKQESVEKDEFI 632


>gi|325120065|emb|CBZ55617.1| hypothetical protein NCLIV_060420 [Neospora caninum Liverpool]
          Length = 781

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G K  + + A +REE    G  E+  P + S DLW  SG Y +Y KE + 
Sbjct: 351 SPGSCFWLPDGAKVYNKLCAFMREEYRFRGFQEVISPNIFSCDLWKMSGHYQNY-KENMY 409

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L D   K     P +      +F+    SYR LP       +  R+EL     G+ R R 
Sbjct: 410 LFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLPLRLADFGVLHRNELSGSLTGLTRVRR 469

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 470 FQQDDAHIF 478


>gi|228994292|ref|ZP_04154183.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228765442|gb|EEM14105.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 641

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + + +RE Q      E+  P + +  LW ESG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIVRNELESFLREIQQNYDYQEVRTPIMMNQGLWEESGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D Y K+ +  ++ ++K+    P +      IF++ + SYR+LP    +     R E    
Sbjct: 314 DHY-KDNMYFSEVDNKSFALKPMNCPGHMLIFKNKLHSYRDLPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|94985607|ref|YP_604971.1| threonyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|123079875|sp|Q1IY82|SYT_DEIGD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94555888|gb|ABF45802.1| threonyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 649

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 146/391 (37%), Gaps = 40/391 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G    + +   +RE+Q +     +  P + + DL+  SG Y  Y      
Sbjct: 266 GKGLPMWLPNGTVLREELTRFLREQQFQRDYQGVVTPNIGNLDLFRTSGHYPYYSDSQFE 325

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +++  +  P +      I+ S  +SYR+LP    +    +R E+     G+ R R 
Sbjct: 326 PLSVDEEQYMLKPMNCPFHIRIYASKPRSYRDLPVRLAEFGTVYRYEMSGELNGLTRVRG 385

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  +  +    + +    G+  +  R        D         
Sbjct: 386 FTQDDAHIF-ARPDQLKKEFLDVLDLTVLVLKTFGMNDVRFRVGVRDPASDKYVGDPAQW 444

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E Q+  + + +  P   E  D               A Y    D             
Sbjct: 445 EVAERQIIEAVEEVGLPYTVEPGD--------------AAFYGPKLDF----------VV 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIES 331
           K V  R  ++G I      Y+LP     T+ G DG++H  V +     G++     ++  
Sbjct: 481 KDVLGREWQLGTI---QVDYNLPERFDLTYTGEDGQEHRPVMIHRAPFGSLERFVGILIE 537

Query: 332 SHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            + G    W   +AP +I LI I   H+   +    +  A     G     DD   ++ +
Sbjct: 538 HYGGDFPFW---LAPRQIMLIPIADRHNAYAQTLANEFKA----AGLRAEVDDSNNRMNA 590

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   A+L   P+ +IVG +  +  +V ++ R
Sbjct: 591 KVRNAELHKIPVMLIVGDQEEARREVSVRER 621


>gi|296110087|ref|YP_003617036.1| prolyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295434901|gb|ADG14072.1| prolyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 451

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 155/411 (37%), Gaps = 74/411 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG   +LP G K       I+ +  + +G  ++  P L    L  + G +   +  E+  
Sbjct: 24  KGCGVYLPYGFKIRKYTFEILSKLLDESGHEQVLFPLLIPETLLAKEGEHIKGFEDEVYW 83

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  +  + +  +K + +LP   YQI   FR E +    ++R
Sbjct: 84  VTHGGKTPLDVKLALRPTSETAIYYMLKLWVKVHTDLPIKLYQIVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            RE +  K+A++   T E ++    +    Y + F  LG+  +                 
Sbjct: 144 LREIMTFKEAHTAHATKEEAEKQVKEAIGIYKKFFDTLGIPYL----------------- 186

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                     +    ++  FP       FD I      ++  T        VHN      
Sbjct: 187 ----------IIKRPEWDKFPGADYTIAFDTIFPDGRAIQIGT--------VHN------ 222

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                               G  +S      F+   G   Y     YGI   R +A++I 
Sbjct: 223 -------------------LGQHFSKTFEIEFETPTGDKDYAYQTCYGISD-RAIASIIA 262

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG+  P  VAP ++ +I +  K  +++  +  +++  RL +    +  DD   + 
Sbjct: 263 IHGDEKGLKLPPVVAPIQVVIIPLIFKGKEEMVINKAKEVAERLKEYRVHI--DDRDIRP 320

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG---IREDMSLEEVIN 436
           G ++   ++ G PL++ +G + + + K+ +  R TG   + E+  LEE + 
Sbjct: 321 GKKYYDWEIKGVPLRIDIGPRDIEEGKITLVRRDTGEKIVIEESELEEKVR 371


>gi|148377386|ref|YP_001256262.1| prolyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291432|emb|CAL58817.1| Prolyl tRNA synthetase (Proline tRNA ligase) [Mycoplasma agalactiae
           PG2]
          Length = 478

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y    +S     +FK    +D +V   S+G+ + R++ A+I +  D +GI
Sbjct: 221 GKALQAGTSHYLAQNFSKRFEISFKNDKNEDEFVYQTSWGV-STRLLGAIIMTHGDNRGI 279

Query: 339 IWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P  VAP ++ ++ + A+ Q    D C ++  +L +    V  D   +  G + + +++
Sbjct: 280 IIPPKVAPVQVDILELFANKQPKVHDFCNELAKQLER-KFRVRLDSTDKSPGYKASNSEI 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            G PL++ VG K + +  V I      +R D +LE+ I   S+  S  R +L
Sbjct: 339 QGVPLRIEVGPKDLENKTVTI------VRRD-TLEKTIVSVSYVKSKVRELL 383


>gi|320536876|ref|ZP_08036869.1| threonyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320146259|gb|EFW37882.1| threonyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 583

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 182/460 (39%), Gaps = 70/460 (15%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+    DAE   H+ + ++ G+ H  + + G   W P G      V   +RE+ 
Sbjct: 170 KEYLAMLE----DAEKRDHRKLGKSFGLFHLDEENPGQIFWHPNGWALYLLVQNYVREKI 225

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  
Sbjct: 226 KADGYLEVKTPFVMPQSLWERSGHWAKYRENMF-ITESEKRLFALKPMNCPGHIEIFKQG 284

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP    +     R+E      G++R R F+  DA+ F    E    S  K F +
Sbjct: 285 IKSYRDLPLRLAEFGSCTRNEPSGSLHGILRVRGFVQDDAHIF--CTEAQISSEVKKFCA 342

Query: 181 YLR-IFHRLGLK--SIPMRAESGP---IGGDLSHEFI--VLADTGETQVFCSKDFMDFPI 232
            L+ ++   G    SI ++  + P   +G D + +     LAD       C    +++  
Sbjct: 343 LLKNMYADFGFAEDSILVKFSTRPEKRVGDDATWDRAEKALADA------CKDAGLEY-- 394

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          + E   A Y    +     L DSL        R  + G I     
Sbjct: 395 --------------EVAEGEGAFYGPKLEF---TLIDSL-------GREWQCGTI---QV 427

Query: 293 KYSLP----MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            Y LP    ++A + G D + H  V +    +G++     ++   + G    +P  ++P 
Sbjct: 428 DYQLPSKERLNAEYIGEDNQKHNPVMLHRAALGSLERFIGILIEHYAG---AFPPWLSPL 484

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +I +        D  EK    L+  G  V  D   +++ ++         P Q+IVG
Sbjct: 485 QAVVIPVAP---TFNDYAEKTAKDLAAQGLRVKADIDTDRMNAKIRKYQEQRIPYQLIVG 541

Query: 408 SKFVSDSK--VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            K  ++    V I H   G ++ M+ E  +N+   + + +
Sbjct: 542 EKEAANGSLAVRIHH---GDQKTMTTEAFVNFIKEKIATH 578


>gi|78778982|ref|YP_397094.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
 gi|123755107|sp|Q31BT7|SYT_PROM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78712481|gb|ABB49658.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 638

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 143/382 (37%), Gaps = 42/382 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      +   IRE   +   +E+  P      LW +SG ++ +  
Sbjct: 255 IQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M   A  N    I  P +      +F   +KSY++LP    +     R+E      G+M
Sbjct: 315 DMFTTASENRTYAI-KPMNCPCHIQLFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F    E  +   +        ++   G   I ++  + P     S E 
Sbjct: 374 RVRNFTQDDAHIF-CKEEQIQEEVSTFIDLVFEVYKTFGFDEIIIKLSTRPEKRVGSEEI 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              ++   T+   +K+      P E   +   I  +                    L D 
Sbjct: 433 WDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFS--------------------LKDC 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L  N+      I+V         +S+P  + AT+   D  K + V +    +G+      
Sbjct: 473 L--NRVWQCGTIQVD--------FSMPIRLEATYVDIDNEKRNPVMLHRAILGSFERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   ++ K  IW   +AP++I L++I   +    + C K    ++  G     D   E+
Sbjct: 523 ILIEQYEAKFPIW---LAPYQIILLSITDRNN---EKCLKFNELINNNGYRSKVDIRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSK 409
           IG +   A +   PL  ++G K
Sbjct: 577 IGYKIREATISRIPLIAVIGDK 598


>gi|19113156|ref|NP_596364.1| cytoplasmic threonine-tRNA ligase Trs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|3183175|sp|P87144|SYTC_SCHPO RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2104451|emb|CAB08788.1| cytoplasmic threonine-tRNA ligase Trs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 703

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 156/394 (39%), Gaps = 39/394 (9%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G +  + +   +R + ++ G  E+  P + + +LW  SG +++Y + M  
Sbjct: 307 SPGSCFFLPHGARIYNTLLKYMRYQYSKRGYQEVITPNMYNVNLWKTSGHWNNYSENMFS 366

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                +K  +  P +      +F+S  +SYR+LP+      +  R+E      G+ R R 
Sbjct: 367 FDIEKEKYAL-KPMNCPGHCVMFKSRDRSYRDLPWRVADFGVLHRNEFSGALSGLTRVRR 425

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFI 211
           F   DA+ F  TP+  +      F     ++   G      +  R E   +G       +
Sbjct: 426 FQQDDAHIF-CTPDQVRSEIEGCFDFLKEVYGTFGFTFHLELSTRPEEKYLGD------L 478

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D  E Q+  + D   +       D               A Y    D+    +FD+L
Sbjct: 479 ATWDKAEAQLKAALDASGYKWELNAGD--------------GAFYGPKIDI---TVFDAL 521

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY----VQMGSYGIGAMRVVAA 327
               + +   ++      F  ++  P SA      G ++     V +    +G++  + A
Sbjct: 522 KRQHQCATIQLDFQLPERFQLEFHAPASAEEAKESGNNNKYTRPVMVHRAILGSLERMIA 581

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + GK   WP  ++P ++ +I + A      +  +K++  LS+    V  D     
Sbjct: 582 ILTEHYAGK---WPFWMSPRQVCIIPVSA---AAYNYADKVHNILSEADIFVDTDKSDNT 635

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +   A L  +    +VG++  S + V +++R
Sbjct: 636 LPKKIRNAQLAQYNFIFVVGAEEESTNSVNVRNR 669


>gi|320156122|ref|YP_004188501.1| threonyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319931434|gb|ADV86298.1| threonyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 642

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 159/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IRE+    G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSVFRDLEVFIREKLAEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +      N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTESQIQDEVTNCIKMVY-DTYQTFGFDNIAVKLSTRPEQRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + + MD                  I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQALESMDIAY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           FD L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 FDCL-------GRAWQCGTV---QLDFNLPNRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D  ++I  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVIMNITDKQA---DYVQEIAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G + +   ++ ++ R         +++ ++Y   + ++
Sbjct: 576 NEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGNDLGKFKVDDFVSYIQDQIAS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|311898556|dbj|BAJ30964.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 470

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 138/335 (41%), Gaps = 62/335 (18%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ + F   ++S+R+LP    Q     R ELRPR   +R+ EFL ++ 
Sbjct: 103 EEPVVVRPTSETIINEYFSKWVQSHRDLPLLINQWANVVRWELRPRV-FLRTTEFLWQEG 161

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E ++        +Y    H                                T 
Sbjct: 162 HTAHATYEDAR--------AYASRIH--------------------------------TD 181

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           V+   DFM            +++ ++ ++ + TA       ++   L   + + K     
Sbjct: 182 VYG--DFM-----------TNVLGIDVVLGRKTAKERFAGAINTLTLEGMMGDGK----- 223

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            +++G     G  ++   + T++    +  +V   S+G+ + R+V  +I S  D  G+  
Sbjct: 224 ALQMGTSHELGQNFAKAFNTTYQLQGAEREHVWQTSWGV-STRMVGGLIMSHGDDNGLRV 282

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV-ADLLG 399
           P  +A  +  ++ IK  D V     E I A+L   G  V  DD  +    + AV  +L G
Sbjct: 283 PPRLAAVQAVVLAIKGEDAVLAKVRE-IGAQLEAAGVRVVVDDRTDTPFGRRAVDWELKG 341

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            PL++ VG + +      +  R+ G +E +S++ +
Sbjct: 342 VPLRIEVGPRDLEAGTAMLVRRIAGGKEPVSVDSL 376


>gi|238620001|ref|YP_002914827.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259511621|sp|C4KHU5|SYP_SULIK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238381071|gb|ACR42159.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 481

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++  + +V    +++G + + G  +S  +    +  DG   Y    SYGI   R +A+
Sbjct: 215 FDTIMPDGKV----MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSYGISD-RAIAS 269

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWD 382
           VI    D  G I P SVAP K+ ++ I A +     QV + + E I   L+K       D
Sbjct: 270 VIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIE-ICEMLNKNNITCVTD 328

Query: 383 DMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              E+  G +F + ++ G P+++ +G + ++ S V IK R       +  EEV+N
Sbjct: 329 QDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKEEVVN 383



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLS 78

Query: 82  -ESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +    ++  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLTI 193


>gi|229085293|ref|ZP_04217535.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228698012|gb|EEL50755.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 642

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + + +RE Q +    E+  P + +  LW ESG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELESFLREIQQKYDYQEVRTPIMMNQGLWEESGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D Y K+ +  ++ ++K+    P +      +F+  ++SYR+LP    +     R E    
Sbjct: 314 DHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKHKLRSYRDLPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|228469293|ref|ZP_04054319.1| threonyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228309192|gb|EEK17794.1| threonyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 650

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 169/418 (40%), Gaps = 62/418 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G +    +   ++  Q R G  ++  P + + +L+  SG Y  YG +  ++
Sbjct: 264 QGLPLWLPRGTQLRLKLEDFLKRIQKRYGYQQVMTPHIGNVELYKTSGHYAKYGADSFQV 323

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               +  +A +  P +     +I++    SYR+LP    +    +R E      G+ R R
Sbjct: 324 ITTPQEGEAFMLKPMNCPHHCEIYKLKPHSYRDLPVRLAEFGTVYRYEQSGELHGLTRVR 383

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS----IPMRAE---SGPIGGDL 206
            F   DA+ F   P+  K  + K+      IF  L  ++    I +R++   S  IG + 
Sbjct: 384 GFTQDDAHIF-CRPDQVKEEFLKVMEIIFIIFRALDFENFEAQISLRSQTDRSKYIGSEE 442

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +       D  E  +  +      P    + ++D+            A Y    D     
Sbjct: 443 NW------DRAEQAIIEACQEAGLPA---HVEYDE-----------AAFYGPKLDFM--- 479

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM- 322
           + D+L        R  ++G I      Y+LP      + G D + H  V +     G+M 
Sbjct: 480 VKDAL-------GRRWQLGTI---QVDYNLPERFELEYTGEDNQKHRPVMIHRAPFGSME 529

Query: 323 RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           R VA +IE +  GK  +W  PD V    +S        +   D   ++ A LS+    V 
Sbjct: 530 RFVAVLIEHTA-GKFPLWLSPDQVVILPVS--------ERFNDYAYEVAAALSEQDISVS 580

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            DD  E++G +    +L   P  +IVG +  +D  V ++ +  G   D   E++  +A
Sbjct: 581 VDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADGTVSVRKQGEG---DAGTEKISTFA 635


>gi|153806270|ref|ZP_01958938.1| hypothetical protein BACCAC_00526 [Bacteroides caccae ATCC 43185]
 gi|149130947|gb|EDM22153.1| hypothetical protein BACCAC_00526 [Bacteroides caccae ATCC 43185]
          Length = 497

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ +I I  +D+  +    K   I  +L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIIPIYKNDEQLKQIDAKVAGIVTKLKALGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y  +
Sbjct: 355 YELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETITCEGIEAYVQN 400



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|126740677|ref|ZP_01756363.1| threonyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126718192|gb|EBA14908.1| threonyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 649

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 12/190 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    +   +R  Q R G +E++ P +    LW  SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPNGWKIYTTLQDYMRRMQERDGYVEVNTPQVVDRKLWEASGHWDKYQE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      +F   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEDHAREKAINALKPMNCPCHVQVFNQGLKSYRDLPLRMAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    S    F+++L +++  LG  +  ++  + P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CSEDQIESETAKFIAFLSKVYADLGFHNWTIKLSTRPEKR 437

Query: 202 IGGDLSHEFI 211
           IG D S + +
Sbjct: 438 IGSDESWDLV 447


>gi|291521022|emb|CBK79315.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Coprococcus
           catus GD/7]
          Length = 585

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 154/412 (37%), Gaps = 68/412 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  +LP G      +   I+E++ + G   +  P + + +L+  SG +D Y + M  
Sbjct: 200 GRGLPMFLPKGYTIWQELENYIKEKERKLGYQHVMTPCVGTVNLYKTSGHWDHYKENMFP 259

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             + +D+A +  P +      I+ +   SYR+LP    +I   FR E      G+ R R 
Sbjct: 260 AMEVDDEAFVLRPMNCPHHMMIYANKRHSYRDLPIRIGEIAHDFRYEASGTLKGIERGRH 319

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F +TPE  K   +++                           DL   F    
Sbjct: 320 FCQNDAHLF-VTPEQIKDEISRVV--------------------------DLI--FSTYE 350

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D G T   C     D   P +   + D        E W     A  +V NE   +   E 
Sbjct: 351 DFGITDYRCVLSLRD---PEDKAKYHDDD------EMWNKAENALREVMNELGLEYTEEI 401

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKD------HYVQMG 315
              +  G +        VG+     T    + LP     T+   DG+       H   +G
Sbjct: 402 GEAAFYGPKLDVNVKPAVGNEITLSTCQLDFCLPAKFQLTYVDKDGEMKTPVVLHRAILG 461

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           S      R +A ++E +   KG + P  +AP ++ ++ +K  D        +I   L   
Sbjct: 462 SLD----RFMAYILEET---KGNL-PTWLAPIQVKVMPVKTDDDDLNAYANEICELLEAQ 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              V  DD  E++G +     +   P  +++G  F       + +RL G ++
Sbjct: 514 NVRVDLDDRAEKLGYRMREGQIQKVPYLLVIG--FNEKDNRTVSYRLHGEKD 563


>gi|323474896|gb|ADX85502.1| prolyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 481

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++  + +V    +++G + + G  +S  +    +  DG   Y    SYGI   R +A+
Sbjct: 215 FDTIMPDGKV----MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSYGISD-RAIAS 269

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWD 382
           VI    D  G I P SVAP K+ ++ I A +     QV + + E I   L+K       D
Sbjct: 270 VIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIE-ICEMLNKNNITCVTD 328

Query: 383 DMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              E+  G +F + ++ G P+++ +G + ++ S V IK R       +  EEV+N
Sbjct: 329 QDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKEEVVN 383



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLS 78

Query: 82  -ESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +    ++  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAI 193


>gi|194210848|ref|XP_001916146.1| PREDICTED: similar to threonyl-tRNA synthetase 2, mitochondrial
           [Equus caballus]
          Length = 667

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 167/426 (39%), Gaps = 60/426 (14%)

Query: 18  AEIASHKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            +I + KL+    +   H+ S G   +LP G +  + + A IR E +R G  E+  PTL 
Sbjct: 248 GQIGALKLLTEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYSRRGFSEVKTPTLF 307

Query: 76  SADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDIFR 119
           S  LW  SG ++ Y ++M  L    +DR   +            +   P +      +F 
Sbjct: 308 STKLWELSGHWEHYQEDMFALQPPGSDRPTGSQSDHSTSHPTDTLALKPMNCPAHCLMFA 367

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              +S+R LP       L   +      G+ R R F   DA+ F   P+  +        
Sbjct: 368 HRPRSWRELPLRLADFGLHRAEVSGSLGGLTRLRRFQQDDAHIF-CAPDQLEAEIRGCLD 426

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+  LG  S  +   + P G      F+     GE    C  D  +  +     +F
Sbjct: 427 FLRSIYAVLGF-SFRLALSTRPSG------FL-----GEP---CLWDQAEQVLQQALEEF 471

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM- 298
            +   LN       A Y    DVH   L D+L        R  + G I      + LP+ 
Sbjct: 472 GEPWDLNPGD---GAFYGPKIDVH---LHDAL-------GRSHQCGTI---QLDFQLPLR 515

Query: 299 -SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +KG  G  +H V +    +G++  +  ++  S  GK   WP  ++PF++ +I +  
Sbjct: 516 FDLQYKGQAGALEHPVLIHRAVLGSVERMLGMLAESCGGK---WPLWLSPFQVVVIPVGT 572

Query: 357 HDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +   R+A   + A  + + CD+   D G  +  +   A L  +  Q +VG K  S   
Sbjct: 573 EQEGYAREAQRSLQA--AGLVCDLD-ADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSKRT 629

Query: 416 VEIKHR 421
           V I+ R
Sbjct: 630 VNIRTR 635


>gi|227830538|ref|YP_002832318.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|229579351|ref|YP_002837749.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|229581889|ref|YP_002840288.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|284998034|ref|YP_003419801.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|259511622|sp|C3MQL0|SYP_SULIL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511624|sp|C3NGV6|SYP_SULIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511625|sp|C3NET8|SYP_SULIY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227456986|gb|ACP35673.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|228010065|gb|ACP45827.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|228012605|gb|ACP48366.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|284445929|gb|ADB87431.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 481

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++  + +V    +++G + + G  +S  +    +  DG   Y    SYGI   R +A+
Sbjct: 215 FDTIMPDGKV----MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSYGISD-RAIAS 269

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWD 382
           VI    D  G I P SVAP K+ ++ I A +     QV + + E I   L+K       D
Sbjct: 270 VIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIE-ICEMLNKNNITCVTD 328

Query: 383 DMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              E+  G +F + ++ G P+++ +G + ++ S V IK R       +  EEV+N
Sbjct: 329 QDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKEEVVN 383



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLR 78

Query: 82  -ESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +    ++  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAI 193


>gi|323477637|gb|ADX82875.1| prolyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 481

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++  + +V    +++G + + G  +S  +    +  DG   Y    SYGI   R +A+
Sbjct: 215 FDTIMPDGKV----MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSYGISD-RAIAS 269

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWD 382
           VI    D  G I P SVAP K+ ++ I A +     QV + + E I   L+K       D
Sbjct: 270 VIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIE-ICEMLNKNNITCVTD 328

Query: 383 DMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              E+  G +F + ++ G P+++ +G + ++ S V IK R       +  EEV+N
Sbjct: 329 QDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKEEVVN 383



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLS 78

Query: 82  -ESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +    ++  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAI 193


>gi|224613500|gb|ACN60329.1| Threonyl-tRNA synthetase, cytoplasmic [Salmo salar]
          Length = 383

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 160/416 (38%), Gaps = 56/416 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G    + +   I+ E  R G  E+  PTL S  LW  SG ++ Y + M  
Sbjct: 2   SPGSCFFLPKGAHIYNTLADFIKTEYRRRGFHEVVTPTLYSTALWERSGHWEHYSENMFT 61

Query: 96  L-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +  D +  A+   P +      +F   ++S+R LP  +       R+EL     G+ R R
Sbjct: 62  VTGDTHTYAL--KPMNCPAHCLMFEQRVRSWRELPLRWADFGALHRNELSGALGGLTRVR 119

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE  +       + ++R  +R+   S      + P      H    L
Sbjct: 120 RFCQDDAHIF-CTPEQLEEEIMAC-LDFVRSVYRVFGFSFHCLLSTRPTPCLGEH---AL 174

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVHNEKL 267
            D  E Q+                      SL    E+W       A Y    D+   ++
Sbjct: 175 WDHAEQQL--------------------ERSLQQFGERWQLNPGDGAFYGPKIDI---QI 211

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            D++    + +   ++    F    ++ L     + G DG+ H  V +    +G++  + 
Sbjct: 212 KDAIGRQHQCATIQLD----FQLPIRFDL----QYVGGDGETHRPVMVHRAVLGSLERMI 263

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDM 384
           A++  +  GK   WP  ++P ++ +I +    +      +++  +  + G   DV  DD 
Sbjct: 264 AILAENFGGK---WPLWLSPAQVIIIPVGGGSET---YAQQVVRQFREAGFMADVD-DDQ 316

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G  +  +   A L  +    +VG K      V ++ R          EEV+   SH
Sbjct: 317 GATLNKKIRSAQLAQYNYIFVVGEKECESGTVSVRTRGGKQLGRRPTEEVLASLSH 372


>gi|319957838|ref|YP_004169101.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Nitratifractor
           salsuginis DSM 16511]
 gi|319420242|gb|ADV47352.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Nitratifractor
           salsuginis DSM 16511]
          Length = 605

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  I+     R G   +  P +  AD+W  SG Y  YG+ M  L 
Sbjct: 231 GLPFWLPKGARLRSKLEQILWRSHRRRGYEPVRGPEILKADMWRTSGHYACYGENMY-LT 289

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + +     P +      IF++  KSYR+LP  +++  +  R E      G++R REF 
Sbjct: 290 EIDGQEYGLKPMNCIGHILIFKNSTKSYRDLPLKYFEYGVVHRHEKSGVLHGLLRVREFT 349

Query: 157 MKDAYSFDLTPEGSK 171
             DA+ F  TPE  K
Sbjct: 350 QDDAHIF-CTPEQIK 363


>gi|307822740|ref|ZP_07652971.1| threonyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307736344|gb|EFO07190.1| threonyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 635

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 160/416 (38%), Gaps = 57/416 (13%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + +T  + H  + + G+  W   G      V   IRE+    G  E+  P 
Sbjct: 237 EAEKRDHRKLAKTLDLFHSQEEAPGMVFWHEKGWVIYQQVEQYIREKLRVNGYGEVKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW  SG ++ +G +M+      ++     P +      I+   +KSYR+LP    
Sbjct: 297 VVDRSLWERSGHWEKFG-DMIFTTHSENRDYAIKPMNCPCHVQIYNQGLKSYRDLPIRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLK 191
           +     R+E      G+MR R F+  DA+ F    EG        F+  L  ++   G +
Sbjct: 356 EFGSCHRNEPSGTLHGLMRVRNFVQDDAHIF--CTEGQIQDEVSTFIDMLFDVYKDFGFE 413

Query: 192 SIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + ++  + P    GD S     + D  E  +                     ++LN+  
Sbjct: 414 EVIIKLSTRPANRVGDDS-----VWDKAENALE--------------------LALNTKG 448

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKG 304
            +W          +  K+  SL +          +G ++  GT    +S+P  + AT+  
Sbjct: 449 LKWDLQ-PGEGAFYGPKIEFSLKDC---------IGRVWQCGTIQVDFSMPGRLDATYIA 498

Query: 305 ADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG      M    I G++     ++   H G   +W   ++P ++ ++NI        +
Sbjct: 499 EDGSRQVPVMLHRAILGSLERFIGILIEQHAGTFPLW---LSPVQVVVLNITDRHA---E 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +I   L K G  V  D   E+IG +     +   P  VI+G K +    + ++
Sbjct: 553 YAAQIMLDLEKQGIRVKIDLRNEKIGFKIREHSMQRVPYLVIIGDKELEQQSITVR 608


>gi|75523950|sp|Q7X2P1|SYP_SPHEL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32188210|gb|AAP46176.1| putative prolyl-tRNA synthetase [Sphingomonas elodea]
          Length = 510

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 132/349 (37%), Gaps = 81/349 (23%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E V+       ++S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEPLVVRPTSETVIGAAMSRWVQSWRDLPVLINQWANVVRWEMRTRM-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E ++    KM   Y R F    L ++P+ A   P                   
Sbjct: 174 HTAHATVEEAQEETRKMLEVY-RDFAETCL-AMPVVAGEKP------------------- 212

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                         EN  F   +S  SI                        E      +
Sbjct: 213 --------------ENERFPGAVSTFSI------------------------EAMMQDGK 234

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + GT +S      F+ ++G+    Q  S+G+ + R++  +I    D  G+  
Sbjct: 235 ALQAGTSHFLGTTFSSAQDIKFQNSEGQFELAQTTSWGV-STRMIGGLIMVHGDDDGLRV 293

Query: 341 PDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           P  VAP++I ++ +   +  D    D C+ + A L+K+        +GE + +   +  +
Sbjct: 294 PPMVAPWQIVIVPMLRDQPEDAATIDYCKSLQAELAKLTA------LGEPVRALLDLKAV 347

Query: 398 -----------LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                       G P+ + VG + V+   V +  R    RED  L+  I
Sbjct: 348 KAQTKRWGWVKKGAPIVIEVGGRDVAGGNVSVIQRNKLYREDGKLDSRI 396


>gi|58039289|ref|YP_191253.1| threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|73919795|sp|Q5FSP9|SYT_GLUOX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58001703|gb|AAW60597.1| Threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 645

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 150/411 (36%), Gaps = 46/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W   G +    +   +R  Q R    E+  P L    LW  SG +D Y +
Sbjct: 256 IQEEAVGQIFWHRKGWRLYTVLQDYMRRAQERNNYEEVRTPQLVDRALWEASGHWDKYRE 315

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M +   +  DK +   P +      IFR  ++SYR LP    +     R E      G+
Sbjct: 316 NMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSYRELPLRMAEFGACHRYEPSGALHGI 375

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F  T +       K       ++  LG  +  ++    P     S E
Sbjct: 376 MRVRGFTQDDAHIF-CTDDQIADETAKFVKMLAEVYSDLGFDTFRVKFSDRPETRAGSDE 434

Query: 210 FIVLADTGETQVFCSKDFMDFPI-PSENTDFD---DIISLNSIVEQWTAPYAATSDVHNE 265
               A+ G  +  C    +++   P E   +    + +  ++I   W         V   
Sbjct: 435 VWDRAE-GSLKKACEIAGVEYEYNPGEGAFYGPKLEFVLTDAIGRDWQCGTLQVDYV--- 490

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRV 324
                LPE                        + A++ G D   H   M    I G+   
Sbjct: 491 -----LPER-----------------------LDASYIGEDSNRHRPVMLHRAILGSFER 522

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK  +W   +AP ++ + +I +      D   ++ A L   G  V  D  
Sbjct: 523 FIGILIEQYAGKFPLW---LAPTQVVVASIVSD---AADYANEVAATLKAAGLQVETDTR 576

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            ++I ++     L   P+ ++VG +   + KV ++      +E +SL++ +
Sbjct: 577 SDKINAKIREHSLARVPVILVVGRREAEERKVAMRRLGGAAQEILSLDDAV 627


>gi|32140557|dbj|BAC78195.1| prolyl-tRNA synthetase [Raphanus sativus]
          Length = 544

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 134/330 (40%), Gaps = 75/330 (22%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 163 EEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTK-PFIRTLEFLWQEG 221

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLADTGE 218
           ++   TPE ++    +M    + I+ R   +  SIP+ A     G     E    ADT  
Sbjct: 222 HTAHATPEEAEKEAKQM----IEIYTRFAFEQTSIPVIA-----GRKSKLETFAGADTTY 272

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           T                         + +++    A  A TS  HN              
Sbjct: 273 T-------------------------IEAMMGDRKALQAGTS--HN-------------- 291

Query: 279 ARGIEVGHIF--YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                +G  F   FGT+        F+  +G+  +V   S+ + + R V  +I +  D  
Sbjct: 292 -----LGQNFSRAFGTQ--------FQDENGERQHVWQTSWAV-STRFVGGIIMTHGDDT 337

Query: 337 GIIWPDSVAPFKISLINIKAHD----QVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQ 391
           G++ P  +AP ++ ++ I   D    QV   A   +   L   G  V  DD  E+  G +
Sbjct: 338 GLMLPPKIAPIQVVIVPIWKKDTEKTQVL-SAASSVKEVLQTAGVRVKLDDTTERTAGWK 396

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           F   ++ G P+++ +G + VS + V +  R
Sbjct: 397 FNFWEMKGVPIRIEIGPRDVSSNCVVVSRR 426


>gi|311031377|ref|ZP_07709467.1| threonyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 643

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 167/406 (41%), Gaps = 40/406 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I +++   G   +  P + S +L+  SG +D Y   M   
Sbjct: 264 QGLPLWLPKGATIRRVIERYIVDKEVELGYDHVYTPVMGSVELYKTSGHWDHYQDGMFPP 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P +      ++++ I SYR LP    ++    R E+     G+ R R  
Sbjct: 324 MEMDNEQLVLRPMNCPHHMMVYKNSIHSYRQLPVRIAELGTMHRYEMSGALAGLQRVRGM 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K    ++    L ++   GL     R         LS+      D
Sbjct: 384 TLNDAHIF-VRPDQIKDELKRVVNLVLEVYKDFGLDDYSFR---------LSYR-----D 428

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP 272
               + +   D M         +  D + L+   +I E   A Y    DV   ++  +L 
Sbjct: 429 PENKEKYFDDDAMWEKAQGMLKEAMDELGLDYFEAIDE--AAFYGPKLDV---QVRTALG 483

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    K+ L    T+ G DGK H   +   G+ +   R VA +IE
Sbjct: 484 KEETLSTVQLD----FLLPEKFDL----TYVGEDGKQHRPVVIHRGVVSTMERFVAFLIE 535

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                KG  +P  +AP ++ +I +        D  +++   L   G  V  D+  E+IG 
Sbjct: 536 EY---KG-AFPTWLAPVQVQVIPVSPDAHF--DYAKEVQDLLKSKGIRVEMDERNEKIGY 589

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +   A +   P  +++G   + +  V ++       E +SLE+ ++
Sbjct: 590 KIREAQMQKIPYMLVLGDNEIQERAVNVRKYGEQKSETISLEKFVD 635


>gi|296448072|ref|ZP_06889975.1| prolyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296254429|gb|EFH01553.1| prolyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 514

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 109/286 (38%), Gaps = 64/286 (22%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GK ++    + ++ +I  PT E ++ D FR  + S+R+LP    Q     R E+R R   
Sbjct: 103 GKLVVDPDSKLEEPLIVRPTSETIIGDAFRRWVSSHRDLPVLINQWANVVRWEMRTRL-F 161

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++       ++    KM   Y  I     + ++P+ A   P        
Sbjct: 162 LRTSEFLWQEGHTAHADEADAREETRKMLEVYREIVE--DVLAVPVIAGEKP-------- 211

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                                    EN  F   ++  SI                     
Sbjct: 212 -------------------------ENERFPGAVNTYSI--------------------- 225

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + ++ G   Y GT ++   +  F+GA G+  +    S+G+ + R+V  VI
Sbjct: 226 ---EAMMQDGKALQAGTSHYLGTNFAHAQNIRFQGASGELEFCHTTSWGV-STRLVGGVI 281

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARL 372
            +  D  G+  P ++AP +I ++ +   K  D      CE + A L
Sbjct: 282 MTHGDDDGLRLPPAIAPKQIVVVPMLRDKPEDSEVLAYCEALKADL 327


>gi|126658692|ref|ZP_01729837.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
 gi|126619954|gb|EAZ90678.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
          Length = 642

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 155/401 (38%), Gaps = 41/401 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+     G   +  P + + +LW  SG +D Y + M    
Sbjct: 265 GLVFWHPRGATMRYIIEDYWRKAHLDGGYELLYTPHVANLELWKTSGHFDFYRENMFDSM 324

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  ++A    P +       +++ + SYR  P  + ++   +R E      G+MR R F 
Sbjct: 325 DIEEQAYQIKPMNCPFHVLTYKNDLHSYREFPLRWAELGTVYRYERSGVLHGLMRVRGFT 384

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L  + +      + ++  +I    G K   +   + P     + E   LA  
Sbjct: 385 QDDAHIFCLPTQIAAEILGVLNLTE-KILSDFGFKDYEVNLSTRPEKSVGTDEGWELATQ 443

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   SK +            +D        +   A Y    D+   K+ D++    +
Sbjct: 444 ALVEALNSKSW---------EYIED--------KGGGAFYGPKIDI---KIKDAIGRTWQ 483

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
            S   ++          ++LP      +  ADG      M    I G++     ++  ++
Sbjct: 484 CSTIQVD----------FNLPERFDMEYVAADGSRQRPIMIHRAIFGSLERFYGILIENY 533

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   +AP ++ L+ +    +  R+  E + A L + G  V  D  GE++G Q  
Sbjct: 534 AGDFPLW---LAPIQLRLLPV---SEAQREYGETVVATLKEAGYRVEIDCTGERLGKQIR 587

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            A+L   P+  IVG+K V    + I+ R  G    M L E+
Sbjct: 588 KAELEKIPVVAIVGNKEVETQSLSIRTRQQGDIGTMDLTEL 628


>gi|300778181|ref|ZP_07088039.1| threonine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300503691|gb|EFK34831.1| threonine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 639

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 156/419 (37%), Gaps = 65/419 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-L 96
           G+  WLP G      +   + + Q + G   +  P + + +L+V SG +D YG++  + +
Sbjct: 260 GLPLWLPKGTALRRKLENFLSDAQKKGGYEFVMSPHIGAKELYVTSGHWDKYGEDSFQPI 319

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              N+ +  +  P +     +I+++   SYR+LP  + +    +R E      G+ R R 
Sbjct: 320 KTPNEGEEFLLKPMNCPHHCEIYKTSQWSYRDLPKRYAEFGTVYRYEQSGELHGLTRVRG 379

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  TP+     + K+    L +F  LG +    +              + L 
Sbjct: 380 FTQDDAHLF-CTPDQLSEEFEKVIDLTLYVFKSLGFEDFVTQ--------------VSLR 424

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D    Q +   D                       E W    +A  +   +K   ++ E 
Sbjct: 425 DPENKQKYIGSD-----------------------ENWEKAESAIINAAEKKGLKTVIEY 461

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G+D + H  V +     G
Sbjct: 462 GEAAFYGPKLDFMVKDALGRKWQLGTIQVDYNLPERFDLHYIGSDNEKHRPVMIHRAPFG 521

Query: 321 AMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +M    A++  +  G   +W  PD      IS        +   D  +K+   L      
Sbjct: 522 SMERFIAILLENTAGDFPLWLSPDQFIILPIS--------EKYVDYSKKVSQFLENHDIS 573

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              DD  E+ G +   A+L   P  ++VG     +  + ++ R  G    M LE+ + Y
Sbjct: 574 GQIDDRNEKTGKKIRDAELKKIPFMLVVGENEEKEGTISVRRRGEGDLGVMKLEDFVAY 632


>gi|139437031|ref|ZP_01771191.1| Hypothetical protein COLAER_00165 [Collinsella aerofaciens ATCC
           25986]
 gi|133776678|gb|EBA40498.1| Hypothetical protein COLAER_00165 [Collinsella aerofaciens ATCC
           25986]
          Length = 611

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 162/416 (38%), Gaps = 57/416 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+   + G   +LP G    + +    RE  ++ G +E+S P + +  LW  SG +D Y 
Sbjct: 231 MMRDEAPGFPFFLPNGMILKNTLLDYWREIHHKAGYVEISTPLIMNKQLWKTSGHWDHYK 290

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M      +D+     P +      ++ S   SYR LP    +I L  R ELR    G+
Sbjct: 291 DNMYSTV-IDDEEYCIKPMNCPGGVLVYASKPHSYRELPIRAGEIGLVHRHELRGALHGL 349

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F + P+        +      ++ + G K    +  R E   +G D 
Sbjct: 350 FRVRCFNQDDAHLF-VRPDQLTDEIVGVVNLIDSVYQKFGFKYHVELSTRPEDS-MGSD- 406

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A+ G  +    +  MD+ +   +  F                Y    D H E 
Sbjct: 407 --EDWARAEEG-LRTALEQLHMDYEVNEGDGAF----------------YGPKIDFHLE- 446

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLPMS--ATFKGADG-KDHYVQMGSYGIG 320
             DSL             G  +  GT    + +P++    +  ADG K   + +     G
Sbjct: 447 --DSL-------------GRTWQCGTVQLDFQMPLNFDLEYVDADGTKKRPIMLHRVCFG 491

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++     GK   W   +AP ++  + +    +  RD   ++ A+L + G  V 
Sbjct: 492 SIERFIGILIEHFAGKFPTW---LAPVQVKALPVS---EKSRDYAHEVCAKLEEAGIRVV 545

Query: 381 WDDMGEQIGSQFAVADLLG-FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E+IG +   A  +   P  +I+G K V    + ++ R     + MS++E +
Sbjct: 546 CDDRDEKIGYKIREARSIDRVPYMLILGEKEVEAGNISVRDRSNETVQ-MSVDEFV 600


>gi|183221772|ref|YP_001839768.1| threonyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911846|ref|YP_001963401.1| threonyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776522|gb|ABZ94823.1| Threonine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780194|gb|ABZ98492.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase; ThrRS)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 638

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 4/160 (2%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +      + G   W P G    + + + IREE  R 
Sbjct: 236 EYIFLIEEAKKRDHRKLGKELDLFS--FQDEAPGFPFWHPKGTVLWNTLASYIREECFRR 293

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW +SG +D++ KE +   D ++      P +      I++ H+ S
Sbjct: 294 GYQEIKTPAILNSSLWKKSGHWDNF-KENMYFTDIDESEFAVKPMNCPGCCLIYKYHMHS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP  F ++    R E+     G+ R R F   DA+ +
Sbjct: 353 YRELPLRFMELGNVHRHEMSGVLHGLFRVRAFTQDDAHIY 392


>gi|167758905|ref|ZP_02431032.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
 gi|167663312|gb|EDS07442.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
          Length = 641

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 153/398 (38%), Gaps = 43/398 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+     G   +LP G    + +    RE     G +E+S P + S  LW  SG +D Y 
Sbjct: 253 MMCDEGPGFPFFLPKGMVLKNTLLDYWRELHKENGYVEVSTPIILSRHLWENSGHWDHYK 312

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +      +++S  +SY++LP    ++ L  R E      G
Sbjct: 313 DNMYTTMIDEEDYAV--KPMNCPGGMLVYKSEPRSYKDLPLRMGELGLVHRHEKSGALHG 370

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R R F   DA+ F +TPE  +     +      I+   G K                 
Sbjct: 371 LFRVRCFTQDDAHIF-MTPEQIRDEIKGVARLIDEIYSLFGFK----------------- 412

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            + V   T       S +  +          DD+     + E   A Y    D H E   
Sbjct: 413 -YHVELSTRPDNSMGSDEDWEMATEGLRGALDDLGLDYMVNEGDGAFYGPKIDFHLE--- 468

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVA 326
           DS+    +     +++     F  +Y+        GADG+ H  + +     G++ R + 
Sbjct: 469 DSIGRTWQCGTIQLDMQMPQRFDLEYT--------GADGEKHRPIMIHRVAFGSIERFIG 520

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +IE         +P  +AP ++ ++ I    +   +  +K+  +L + G     D+  E
Sbjct: 521 ILIEHFAGA----FPTWLAPVQVKVLPIS---EKHLEYGKKVLEQLEEAGIRAELDERAE 573

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +IG +   A +   P  ++VG+K    + V ++ R  G
Sbjct: 574 KIGYKIREAQMNKIPYMLVVGAKEEEQNLVSVRSRFAG 611


>gi|146297790|ref|YP_001192381.1| threonyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|189083608|sp|A5FP01|SYT_FLAJO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146152208|gb|ABQ03062.1| threonyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 648

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/400 (20%), Positives = 150/400 (37%), Gaps = 61/400 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G    D +   ++  Q + G  ++  P +   +L+V SG Y  YG +  + 
Sbjct: 259 QGLPLWLPKGAALRDRLEQFLKRAQKKAGYEQVVSPHIGQKELYVTSGHYAKYGADSFQP 318

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I+     SY++LP  + +    +R E      G+ R R
Sbjct: 319 IHTPAEGEEFLLKPMNCPHHCEIYNVRPWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE     + K+    L +F  LG ++   +              I L
Sbjct: 379 GFTQDDAHIF-CTPEQLDEEFKKVIDLVLYVFGSLGFENFTAQ--------------ISL 423

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W     A  +   +K  +++ E
Sbjct: 424 RDQEDREKYIGTD-----------------------ENWEKAENAIINAAKDKGLNTVVE 460

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP     T+KGAD + H  V +     
Sbjct: 461 YGEAAFYGPKLDFMVKDALGRQWQLGTIQVDYNLPERFELTYKGADNELHRPVMIHRAPF 520

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+M    A++     G   +W   + P +  ++++    +   +  +K+   L       
Sbjct: 521 GSMERFIAILLEHTAGNFPLW---LMPEQAIILSL---SEKYENYAKKVLDLLENHEIRA 574

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             D+  E IG +   A++   P  +IVG +   +  + I+
Sbjct: 575 LIDNRNETIGKKIRDAEMQKIPFMLIVGEEEEKNGTISIR 614


>gi|325103180|ref|YP_004272834.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Pedobacter
           saltans DSM 12145]
 gi|324972028|gb|ADY51012.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Pedobacter
           saltans DSM 12145]
          Length = 642

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 163/409 (39%), Gaps = 53/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G    + + + +++ Q + G  ++  P +   +L++ SG YD YG +  +  
Sbjct: 262 GLPLWLPKGTALRERLVSFLQKAQQKAGYDQVITPHIGHKNLYITSGHYDKYGADSFQPI 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              +  +     P +     +I++S  +SY++LP    +    +R E      G+ R R 
Sbjct: 322 KTPQEGEEFFLKPMNCPHHCEIYKSKPRSYKDLPVRLAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG----LKSIPMR---AESGPIGGDLS 207
           F   DA+ F   P+  K  + K+    L +F  LG    +  + +R    +S  IG D  
Sbjct: 382 FTQDDAHLF-CRPDQVKEEFKKVIDLVLYVFKALGFDEYIAQVSLRDPENKSKYIGSD-- 438

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E  +LA+    +    K                   L ++VE   A +           
Sbjct: 439 -ENWILAENAIIEAAAEK------------------GLPTVVETGEAAFYGPK------- 472

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRV 324
            D +   K    R  ++G I      Y+LP      + G+D + H  V +     G++  
Sbjct: 473 LDFMV--KDALGRKWQLGTI---QVDYNLPERFELEYTGSDNQKHRPVMIHRAPFGSLER 527

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             AV+     G   +W   + P +  ++ I    +   +  +K+   L+        D  
Sbjct: 528 FVAVLIEHCAGNFPLW---LTPEQFIVLPI---SEKFEEYGKKVLDSLNNSDIRGLIDLR 581

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            E+IG +   A++   P  +I+G K + D  V ++    G +  M++EE
Sbjct: 582 DEKIGRKIRDAEVKKLPYMLIIGEKEMQDGMVSVRKHGEGDKGSMTIEE 630


>gi|282898730|ref|ZP_06306717.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196257|gb|EFA71167.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
          Length = 610

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M  + 
Sbjct: 224 GLPLWTPKGTLLRSILEDFLKKEQLKRGYLPVVTPHIARVDLFKTSGHWQKYKEDMFPMM 283

Query: 98  DRN------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             N      D+  +  P +      I++S ++SYR LP    +    +R E      G+ 
Sbjct: 284 AENEESKALDQGFVLKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGELGGLT 343

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F + D++ F +TPE     +  +    L +F RL LK+   R
Sbjct: 344 RVRGFTVDDSHLF-VTPEQLDEEFLNVVDLILTVFRRLQLKNFKAR 388


>gi|155061091|gb|ABS90481.1| threonyl-tRNA synthetase [Streptomyces albus]
          Length = 439

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 157/389 (40%), Gaps = 42/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   +R  + R G   +  P L   +L+  SG +  Y ++M    
Sbjct: 57  GLPYWLPDGAAVRHALEEYVRAAERRAGYRHVYSPVLGKRELYEISGHWSHYSEDMFPPM 116

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-RSREFL 156
           +   + M+  P+       I+RS  +S+R LP    ++   +R EL    G + R R   
Sbjct: 117 EVGGEQMLLRPSLCPHHALIYRSRPRSHRELPLRMAELGGMYRAELSGVLGGLSRVRSIH 176

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLAD 215
           + DA+ F    + +  +   + +   R +  LG++    R    GP G     +++   +
Sbjct: 177 LNDAHVFCTLDQAAGEARAALEM-IGRAYEALGIRPARFRLSLPGPGG-----KYVADPE 230

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                     + +D    +    ++        VE   A Y    DV   ++ D      
Sbjct: 231 KWRRSTALLTEVLD----ASGVAYE-------AVEGEAAFYGPKIDV---QIADGQGRES 276

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSH 333
            +S   ++      FG +Y         GADG  H  V +    IG++ R VA ++E  H
Sbjct: 277 TLSTVQVDFHQPERFGLRYI--------GADGAGHRPVMIHRSVIGSVERAVAHLVE-EH 327

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
            G    W   +AP +I+++ +    QV     E    R + +G      D G   +G++ 
Sbjct: 328 GGAFPAW---LAPVQIAVLPVTG-AQV--PDGEAFLRRCAALGLRAEQADPGRGSLGARI 381

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             A L+  P QV++G +  +D +V ++ R
Sbjct: 382 RAARLV--PYQVVIGEEEAADGRVALRLR 408


>gi|169828364|ref|YP_001698522.1| prolyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168992852|gb|ACA40392.1| Prolyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 483

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + + ++ G   Y GTK++   +  +     +  YV   S+G  + R++ +VI    D +G
Sbjct: 219 NGKAVQAGTSHYLGTKFAEAFNIKYLNKANQHEYVHTTSWGT-STRLIGSVIMVHGDEQG 277

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           +I P  +AP ++ LI +   K + Q+  +  + I+A L   G  V  DD  +  G +F  
Sbjct: 278 LILPPRIAPTQVVLIPVGPWKKNPQIM-EQLDAIFAALKAKGIRVRLDDSDQSPGFKFNE 336

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + +++  +K R    ++ + L  V+
Sbjct: 337 WELKGVPVRIELGPRDLENNQALLKARDEDEKQTIELATVV 377


>gi|327398462|ref|YP_004339331.1| threonyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181091|gb|AEA33272.1| threonyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 620

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 159/400 (39%), Gaps = 61/400 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  + G   +  P +    LW  SG +D Y +E +   
Sbjct: 247 GLIIWHPKGAMLRYLIEEFERKEHLKRGYEFVKGPEILRTQLWKRSGHFDHY-RENMYFT 305

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +D++    P +      +++S  +SYR LP  ++++ +  R E      G++R REF 
Sbjct: 306 EIDDQSFGIKPMNCLGHIQVYKSKKRSYRELPKRYFELGVVHRHEKSGVLHGLLRVREFT 365

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVL 213
             DA+ F   P+        +      +    G +    I  R E+  IG D   E    
Sbjct: 366 QDDAHIF-CRPDQLNDEIIGVLNFVQDVMDIFGFEYELEISTRPENS-IGTDQQWELATN 423

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A             +   + +   ++D       I E   A Y    DV   KL D+L  
Sbjct: 424 A-------------LINALKNTGREYD-------INEGDGAFYGPKIDV---KLKDALGR 460

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKD------HYVQMGSYGIGAMRVV 325
             + +               ++LP     T+   DGK+      H V +GS      R +
Sbjct: 461 KWQCAT----------IQCDFTLPERFDLTYVDEDGKEKQPVMVHRVILGS----IERFI 506

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           A +IE +++G   +W   +AP ++ ++ + + H+   +D    +Y  L   G  V  ++ 
Sbjct: 507 AILIE-NYEGDFPVW---IAPVQVRVLPVSEKHEAYAKD----VYQTLKDRGIRVEIEER 558

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +G +   A+    P  V+VG K + D  + ++ R  G
Sbjct: 559 NETLGKKIRFAETDKVPYVVVVGDKEIEDKTISVRKRKEG 598


>gi|254294721|ref|YP_003060744.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254043252|gb|ACT60047.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 654

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 159/433 (36%), Gaps = 68/433 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   ++G   W P G      + A IR  Q+  G +E+  P L ++  W +SG +  + +
Sbjct: 256 LQSEAQGSVFWHPNGFMIWRQLEAYIRRRQDDDGYVEVKTPQLLNSVFWEQSGHWSKFRE 315

Query: 92  EMLRLADR-------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D                + M   P +      IF+   +SYR+LP    +    
Sbjct: 316 NMFVVPDEIPSVEEEGPVLSGEGELMALKPMNCPAHVQIFKQGTRSYRDLPLRMAEFGCC 375

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R+E      G+MR R+    DA+ F    + +  +  +    + R++   GL  I  + 
Sbjct: 376 HRNEPHGALHGIMRVRQMTQDDAHIFCREDQVANETL-RFLNLFKRVYGDFGLDQISYKL 434

Query: 198 ESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            + P    G D +       D  E  +  +       +     +FD         E   A
Sbjct: 435 ATRPEQRAGNDETW------DQAEGALATA-------LNEAGLEFD-------YAEGEGA 474

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKD 309
            Y    + H   L D+             +G  +  GT    Y LP  + AT+ G DG+ 
Sbjct: 475 FYGPKLEFH---LTDA-------------IGRTWQCGTLQLDYVLPERLDATYVGEDGEK 518

Query: 310 HYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H   M    + G       ++  ++ G   +W   +AP ++++  I           EK+
Sbjct: 519 HRPVMLHRAVFGTFERFMGILIENYAGAFPMW---LAPTQVAIATITPKADAY---AEKV 572

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-- 426
            ARL   G  V  D   E+I  +      +  P+  ++G     + K+ ++    G    
Sbjct: 573 AARLRAKGIRVELDLRHEKINYKVREHSHMKVPVIAVIGMNEAEEEKLALRRFGAGNARP 632

Query: 427 EDMSLEEVINYAS 439
           E +SL+E     S
Sbjct: 633 EILSLDEACQLLS 645


>gi|259418221|ref|ZP_05742139.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259345616|gb|EEW57460.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 648

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 9/177 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    +   +R  Q++ G +E++ P + +  LW  SG +D+Y +
Sbjct: 260 MQEEAPGMVFWHPNGWRIYTTLQDYMRRMQDKGGYVEVNTPQVVNRKLWEASGHWDNYQE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      +F   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEDHAREKAVNALKPMNCPCHIQVFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP 201
             G+MR R F   D + F    E    +  K FVS+L +++  LG +   ++  + P
Sbjct: 380 MHGIMRVRGFTQDDGHIF--CTEEQVEAETKEFVSFLAKVYQDLGFEKWRVKLSTRP 434


>gi|255283096|ref|ZP_05347651.1| proline--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255266398|gb|EET59603.1| proline--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 479

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 123/323 (38%), Gaps = 67/323 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAY 161
           M   PT E +  D + + I SYR+LP  + Q    +++    RP    +RSREFL ++ +
Sbjct: 110 MCVRPTSETLFCDFYANDIHSYRDLPKVYNQWCSVMRWEKTTRP---FLRSREFLWQEGH 166

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   T E ++    +M   Y                                AD      
Sbjct: 167 TAHATAEEAEERTIQMLNVY--------------------------------AD------ 188

Query: 222 FCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           FC ++F+  P I    TD +             A Y   S +H+ K   S          
Sbjct: 189 FC-EEFLAIPVIKGRKTDKEKFAGAE-------ATYTIESLMHDGKALQS---------- 230

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
               G    FG  ++      +   D    YV   S+G+   R++ A+I    D  G++ 
Sbjct: 231 ----GTSHNFGDGFAKAFGIQYADKDNTLKYVHQTSWGM-TTRMIGAIIMVHGDNSGLVL 285

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  VAP ++ +I I+       D   ++   L+  G  V  DD  +  G +F+  ++ G 
Sbjct: 286 PPRVAPTQVMVIPIQMQKDGVLDKANEVKTALAAAGLRVKLDDSEKSPGWKFSEQEMRGI 345

Query: 401 PLQVIVGSKFVSDSKVEIKHRLT 423
           P+++ +G K +   +  I  R T
Sbjct: 346 PVRIELGPKDIEAGQAVIVRRDT 368


>gi|167763511|ref|ZP_02435638.1| hypothetical protein BACSTE_01885 [Bacteroides stercoris ATCC
           43183]
 gi|167698805|gb|EDS15384.1| hypothetical protein BACSTE_01885 [Bacteroides stercoris ATCC
           43183]
          Length = 646

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 157/428 (36%), Gaps = 67/428 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  + 
Sbjct: 261 KGLPMWLPKGAALRIRLQEFLRRIQARYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQP 320

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      I+++  +SY++LP    +     R E      G+ R R
Sbjct: 321 IHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + ++      +F  +  ++   +              I L
Sbjct: 381 SFTQDDAHIF-CRPDQVKDEFLRVMDIISIVFQSMHFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK   +  E
Sbjct: 426 RDKVNREKYIGSD-----------------------ENWEKAEQAIIEACEEKGLKARVE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + GAD + H  V +     
Sbjct: 463 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMIHRAPF 522

Query: 320 GAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G+M R VA +IE +  GK  +W  PD VA   IS        +   D  +++   L +  
Sbjct: 523 GSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYAQEVKDYLKRYD 573

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D+  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E+   
Sbjct: 574 VRAIVDERNEKIGRKIRDNEMKRIPYMLIVGEKEAENREVSVRKQGEGDQGTMKFEDFAK 633

Query: 437 YASHRFSN 444
             +    N
Sbjct: 634 KVNEEVQN 641


>gi|89891844|ref|ZP_01203345.1| threonyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89515749|gb|EAS18550.1| threonyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 648

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/395 (20%), Positives = 162/395 (41%), Gaps = 51/395 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + +   +++ Q + G   +  P + S +L+V SG Y+ YG +  + 
Sbjct: 261 QGLPLWLPKGAALRERLEDFLKKAQKKAGYEMVVSPHIGSKELYVTSGHYEKYGADSFQP 320

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                +D+  +  P +     +I++S   SYR+LP  F +    +R E      G+ R R
Sbjct: 321 IKTPSDDEEFLLKPMNCPHHCEIYKSSQWSYRDLPKRFAEFGTVYRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + PE     +  +    L +F  LG ++   +              + +
Sbjct: 381 GFTQDDAHIFCM-PEQLDKEFKAVIDLVLYVFGSLGFENFTAQ--------------VSI 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIIS------LNSIVEQWTAPYAATSDVHNEKL 267
            D  + + +   D  ++ I +EN     IIS      L+ ++E+  A +           
Sbjct: 426 RDPKKPEKYIG-DTKNWEI-AENA----IISAAKDKGLDYVIEEGEAAFYGPK------- 472

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRV 324
            D +   K    R  ++G I      Y+LP      +KGAD + H  V +     G+M  
Sbjct: 473 LDFMV--KDALGRSWQLGTI---QVDYNLPERFDLWYKGADNESHRPVMIHRAPFGSMER 527

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A++     G   +W   + P + +++++    +   +  +++   L         D+ 
Sbjct: 528 FIAILLEHTGGNFPLW---LMPEQCTILSL---SEKYENYAKQVANSLENNEIRTTIDNR 581

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            E +G +   A++   P  +IVG +   D  + ++
Sbjct: 582 AETMGKKIREAEMNKLPYMLIVGEQEEKDGTISVR 616


>gi|55981844|ref|YP_145141.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|7388285|sp|P56881|SYT_THET8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6689424|emb|CAB65483.1| threonyl-tRNA synthetase [Thermus thermophilus]
 gi|55773257|dbj|BAD71698.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 659

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 161/426 (37%), Gaps = 56/426 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-- 93
            KG+  WLP G    + + A +REEQ R G   ++ P + S +L+  SG Y  Y +    
Sbjct: 270 GKGLVLWLPKGNVVREELMAFMREEQVRRGYQLVTTPHIGSLELYKTSGHYPYYAESQFP 329

Query: 94  -LRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
            +   +R  ++  +  P +      I+    +SYR LP    +    +R E      G+ 
Sbjct: 330 PISFKERGEEEEYLLKPMNCPHHIRIYAYRKRSYRELPLRLAEFGTVYRYEKAGELLGLT 389

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGPIGGD 205
           R R F   DA+ F  TPE  K  +  +    L++F  LGLK    R      +S    GD
Sbjct: 390 RVRGFTQDDAHIF-CTPEEVKGEFLGVLDLVLKVFATLGLKDYRARIGVRDPKSDKYVGD 448

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAPYAATSD 261
            +     LA+  + +   ++  + + +   +  F     D +  +++  +W      T  
Sbjct: 449 EAK--WALAER-QIEEAAAEAGLRYTVEEGDAAFYGPKLDFVVKDALGREWQ---LGTIQ 502

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG 320
           V       +LPE                FG         T+ G DG++H  V +     G
Sbjct: 503 VDY-----NLPER---------------FGL--------TYVGKDGEEHRPVMLHRAPFG 534

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++     G   +W             +    +   D   ++  RL + G    
Sbjct: 535 SLERFIGILIEHFAGDFPLW------LAPVQAVVVPVSEKQEDYAREVAGRLKEAGLRAE 588

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D   E++ ++   A++   P  ++VG +  ++  V ++ R  G    M L   +  A  
Sbjct: 589 ADTRPERMQARIRDAEVQKVPYILVVGEREKAEGAVSVRRRKKGNLGTMPLAAFLEGALR 648

Query: 441 RFSNNR 446
            +   R
Sbjct: 649 EYRERR 654


>gi|209523462|ref|ZP_03272017.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209496204|gb|EDZ96504.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 622

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 159/407 (39%), Gaps = 53/407 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+   + G   +  P + + +LW  SG YD Y + M    
Sbjct: 244 GLVFWHPKGSRMRLLIEDYWRQAHLQDGYELLYSPHIANLELWKTSGHYDFYRENMFDQI 303

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  +++    P +       ++SH+ SYR LP  + ++   +R E      G+MR R F 
Sbjct: 304 EIENQSYQLKPMNCPFHVLTYQSHLHSYRELPIRWAELGTVYRYERSGVLHGLMRVRGFT 363

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F L PE        +     +I    G     +   + P   +G D   +    
Sbjct: 364 QDDAHIFCL-PEQVADEILGVLNLTEKILSDFGFSKYEVNLSTRPSKSVGNDAVWQLAT- 421

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                          D  I + NT   D ++     E   A Y    D+   K+ D+   
Sbjct: 422 ---------------DALIAALNTKGWDYVT----DEGGGAFYGPKIDI---KIQDA--- 456

Query: 274 NKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
                     +G ++   T    ++LP   +  +  ADG      M    I G++     
Sbjct: 457 ----------IGRLWQCSTIQVDFNLPERFNMEYVAADGSRQRPIMIHRAIFGSLERFFG 506

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++  ++ G   +W   +AP ++ ++ +       RD  + I   L +       D+ GE+
Sbjct: 507 ILIENYAGDFPLW---LAPVQVRVLAVSDR---FRDYAQSIAQSLRQQNIRAEVDNTGER 560

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G Q   ++L   P+ V++G + + +  + ++ R +G    M+L ++
Sbjct: 561 LGKQIRNSELEKIPVTVVIGQRELDNQSLSVRTRSSGDLGTMTLPQL 607


>gi|294792093|ref|ZP_06757241.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457323|gb|EFG25685.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 641

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 158/395 (40%), Gaps = 47/395 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I +   G   +LP G    + +    RE  +     E+  P + S  LW  SG +D Y 
Sbjct: 261 VIKEEGPGFPFFLPKGMALRNELENFWREVHHDFDYEEIRTPIILSKHLWETSGHWDHY- 319

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +     +D+     P +      ++++ + SYR+ P  + ++ L  R EL     G+
Sbjct: 320 RENMYTTIIDDEEYAIKPMNCPGGILVYQNEMHSYRDFPLRYAELGLVHRHELSGALHGL 379

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSH 208
            R R F   DA+ F + P+  +    K+   + RI+ + GLK  + +  +     GD   
Sbjct: 380 FRVRAFTQDDAHVF-MLPDQMQTELMKVIELFDRIYSQFGLKYHVELSTKPDNAMGD--- 435

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + I  A T   +       + + I   +  F                Y    D H E   
Sbjct: 436 DAIWEAATEALRNAIEAKGIPYVINPGDGAF----------------YGPKLDYHIE--- 476

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           DSL        R  + G I       +LP      + G DG+ H  + +     G+M   
Sbjct: 477 DSL-------GRTWQCGTI---QLDMNLPERFQIEYIGEDGQKHRPIMIHRACFGSMERF 526

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             ++   + G    +P  +AP ++ ++ I + H +  ++  ++++    +V      DD 
Sbjct: 527 IGILTEHYAGA---FPTWMAPVQVKILPISEKHVEYAKELAKQMHRDYVRVEV----DDR 579

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            E+IG +   A +   P  ++VG K V +  V ++
Sbjct: 580 SEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVR 614


>gi|289423700|ref|ZP_06425499.1| proline--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289155950|gb|EFD04616.1| proline--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 481

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 142/362 (39%), Gaps = 81/362 (22%)

Query: 80  WVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
           WV  G     G ++L  RLA R        PT E ++  ++   + SYR LPF + Q   
Sbjct: 98  WVTQG-----GNKVLEERLAVR--------PTSETIICTMYAKWLNSYRQLPFLYNQWNS 144

Query: 137 -LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
            +++    RP    +R+ EFL ++ ++   T + +     +   +Y         KS+  
Sbjct: 145 VVRWEKSTRP---FLRTSEFLWQEGHTLHETEQEAIDETLQQLAAY---------KSV-- 190

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                                       ++D M  P+       D   S +      +A 
Sbjct: 191 ----------------------------AEDLMAIPV------IDGRKSESEKFAGASAT 216

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y   + +H+ K   S              G   + G  ++     TF   +GK       
Sbjct: 217 YTIEAMMHDGKALQS--------------GTSHFLGQHFTKAFDITFSDREGKLANPYHT 262

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           S+GI + R++  +I    D +G++ P  +AP ++ +I I A+     +  +K+ A L   
Sbjct: 263 SWGI-STRLIGGLIMVHSDNRGLVLPPKMAPTQVIIIPIAANKGGVMEVVDKVAADLKAK 321

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD      G +F  A++ G P+++ +G K +  ++     R    + +MSL+ V
Sbjct: 322 GISVEVDDRDNYSPGYKFNDAEMKGIPVRLEIGPKDIEKNQALAFRRDELTKSEMSLDTV 381

Query: 435 IN 436
           ++
Sbjct: 382 VD 383


>gi|149280220|ref|ZP_01886343.1| prolyl-tRNA synthetase [Pedobacter sp. BAL39]
 gi|149229057|gb|EDM34453.1| prolyl-tRNA synthetase [Pedobacter sp. BAL39]
          Length = 490

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D  G+
Sbjct: 232 GKALQAGTSHFLGQNFAKAFDVKFTNKEGKIEHVWATSWGV-STRLMGALIMAHSDDAGL 290

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I   D+  +      +++  +L ++G  V +DD   Q  G +FA 
Sbjct: 291 VLPPKLAPIQVVIVPIYKGDEELKKISSFVDELMPKLKRLGISVKYDDRDTQRPGFKFAE 350

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            +L G P+++ +G + + +  VE+  R T
Sbjct: 351 YELKGVPIRLAIGGRDMENGTVELARRDT 379



 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           + D  G  ++    + ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R
Sbjct: 98  KNDGNGNIIVDETAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPLLINQWANVVRWEMR 157

Query: 145 PRFGVMRSREFLMKDAYS 162
            R   +R+ EFL ++ ++
Sbjct: 158 TRL-FLRTTEFLWQEGHT 174


>gi|91070150|gb|ABE11072.1| threonyl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           HF10-11A3]
          Length = 638

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 143/382 (37%), Gaps = 42/382 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      +   IR    +   +E+  P      LW +SG ++ +  
Sbjct: 255 IQEESPGMIFWHPNGWTIYQVLEKYIRGILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M   A  N    I  P +      +F   +KSY++LP    +     R+E      G+M
Sbjct: 315 DMFTTASENRTYAI-KPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   +        ++   G   I ++  + P     S E 
Sbjct: 374 RVRNFTQDDAHIF-CTEEQIQEEVSTFIDLVFEVYKTFGFDEIIIKLSTRPQKRVGSEEI 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              ++   ++   +K+      P E   +   I  +                    L D 
Sbjct: 433 WDKSEEALSKALDNKNLKWELQPGEGAFYGPKIEFS--------------------LKDC 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L  N+      I+V         +S+P  + AT+   +  K + V +    +G+      
Sbjct: 473 L--NRVWQCGTIQVD--------FSMPIRLDATYVDINNEKRNPVMLHRAILGSFERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   ++ K  IW   +AP++I L++I   +    D C K    L+  G     D   E+
Sbjct: 523 ILIEQYEAKFPIW---IAPYQIILLSITDRNI---DKCLKFNELLNNNGYRSKVDIRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSK 409
           IG +   A L   PL  ++G K
Sbjct: 577 IGYKIREATLKRVPLIAVIGDK 598


>gi|81429010|ref|YP_396010.1| threonyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123742216|sp|Q38VT0|SYT_LACSS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78610652|emb|CAI55703.1| Threonyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 656

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 155/386 (40%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G     ++   I +++   G   +  P L + DL+ +SG +D Y ++M    
Sbjct: 263 GLPYWLPNGATIRRSIERYIIDKEVANGYEHVYTPILANLDLYKQSGHWDHYREDMFPPM 322

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ H +SYR LP    ++ +  R E      G+ R RE 
Sbjct: 323 DMGDGEMLELRPMNCPSHIQVYKHHPRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 382

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  +  +  +    + ++    +     R         LS+      D
Sbjct: 383 TLNDGHTF-VRPDQIQDEFKSILGLMIDVYADFNINDYTFR---------LSYR-----D 427

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     +      D + L+ +  E   A Y    DV  +    ++   
Sbjct: 428 PANTEKYFDDDEMWNKAQAMLKGAMDDLGLDYVEAEGEAAFYGPKLDVQTKT---AMGNE 484

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + G DG+ H   M   G +  M    A +   +
Sbjct: 485 ETLSTIQLD----FMLPERFDL----HYVGEDGEMHRPVMIHRGLVSTMERFTAYLTEIY 536

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP +  +I +K  + +  D  + I   + K G  V  DD  E++G +  
Sbjct: 537 KGAFPTW---LAPTQAVIIPVK--NDLHYDYAKNIKDEMIKRGLRVRIDDRNEKMGYKIR 591

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  ++VG + ++ + V ++
Sbjct: 592 EAQTSKIPYTLVVGDQELAQATVSVR 617


>gi|296388793|ref|ZP_06878268.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 640

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHGYVEVRTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQIFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  K          L+++   G   I M+  + P   +G D
Sbjct: 374 RVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLQVYRDFGFTDIAMKLSTRPAKRVGSD 430


>gi|261212792|ref|ZP_05927076.1| threonyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260837857|gb|EEX64534.1| threonyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 642

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   MD P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMDIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|172054921|ref|YP_001806248.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171701202|gb|ACB54182.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 644

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 155/401 (38%), Gaps = 41/401 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+     G   +  P + + +LW  SG +D Y + M    
Sbjct: 267 GLVFWHPRGATMRYLIEDYWRKAHLDGGYELLYTPHVANLELWKTSGHFDFYRENMFDSM 326

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  ++A    P +       +++ + SYR  P  + ++   +R E      G+MR R F 
Sbjct: 327 DIEEQAYQIKPMNCPFHVLTYKNDLHSYREFPLRWAELGTVYRYERSGVLHGLMRVRGFT 386

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L  + +      + ++  +I    G K   +   + P     + E   LA  
Sbjct: 387 QDDAHIFCLPTQIASEILGVLNLTE-KILSDFGFKDYEVNLSTRPEKSVGTDEGWELATQ 445

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   SK +            +D        +   A Y    D+   K+ D++    +
Sbjct: 446 ALVEALNSKSW---------EYIED--------KGGGAFYGPKIDI---KIKDAIGRTWQ 485

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
            S   ++          ++LP      +  ADG      M    I G++     ++  ++
Sbjct: 486 CSTIQVD----------FNLPERFDMEYVAADGSRQRPIMIHRAIFGSLERFYGILIENY 535

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   +AP ++ L+ +    +  R+  E + A L + G  V  D  GE++G Q  
Sbjct: 536 AGDFPLW---LAPIQLRLLPV---SEAQREYGEAVVATLKEAGYRVEIDCTGERLGKQIR 589

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            A+L   P+  IVG+K V    + I+ R  G    M L E+
Sbjct: 590 NAELEKIPVVAIVGNKEVETQSLSIRTRQQGDIGTMDLTEL 630


>gi|15597940|ref|NP_251434.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|116050734|ref|YP_790445.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891076|ref|YP_002439942.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|254241197|ref|ZP_04934519.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|313107813|ref|ZP_07793987.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|22654141|sp|Q9I099|SYT_PSEAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122259859|sp|Q02NP1|SYT_PSEAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701406|sp|B7V188|SYT_PSEA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9948822|gb|AAG06132.1|AE004702_9 threonyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|115585955|gb|ABJ11970.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126194575|gb|EAZ58638.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|218771301|emb|CAW27066.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|310880489|gb|EFQ39083.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 640

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHGYVEVRTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQIFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  K          L+++   G   I M+  + P   +G D
Sbjct: 374 RVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLQVYRDFGFTDIAMKLSTRPAKRVGSD 430


>gi|82523876|emb|CAI78599.1| threonyl-tRNA synthetase [uncultured delta proteobacterium]
          Length = 631

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 168/407 (41%), Gaps = 53/407 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +     +E  + G  ++  P L  ++LW +SG +D Y +E +  +
Sbjct: 258 GMILWHPKGAMFRYLLEDFEIKEHLKRGYQKVIGPQLLRSELWKKSGHFDHY-RENMYFS 316

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++++    P +      I++SHI SYR+LP  ++++    R E      G++R REF 
Sbjct: 317 EIDNQSYGIKPMNCLAHMLIYKSHIHSYRDLPIRYFELGTVHRHEKSGVLHGLLRVREFT 376

Query: 157 MKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFI 211
             DA+    TPE   +    +  F+ Y  +    G K    I  R E   IG D   E  
Sbjct: 377 QDDAHIL-CTPEQLDNEIKSILDFIKY--VMGIFGFKYEVEISTRPEHS-IGSDEDWERA 432

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A             +   +    T +D    LN   E   A Y    D    KL D+L
Sbjct: 433 TNA-------------LKSALEESGTGYD----LN---EGDGAFYGPKIDF---KLKDAL 469

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
               + +               ++LP     ++ G DG K   V +    +GA+     +
Sbjct: 470 DRKWQCAT----------IQCDFTLPERFELSYVGQDGVKYRPVMLHRVILGAIERFVGI 519

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P +  ++ +   D+V  +  + +Y  L      V  D   E++
Sbjct: 520 LIEHYAGAFPVW---LSPVQAVILTVT--DRV-DEYAQNLYQELIDADIRVEMDIRNEKL 573

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A L   P  +I+G K VS+ +V ++ R    + ++++E+ I
Sbjct: 574 GLKVREAQLQKIPYMLIIGDKEVSEKRVTLRCRDDKKQSELNIEDFI 620


>gi|269966330|ref|ZP_06180417.1| threonyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269829069|gb|EEZ83316.1| threonyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 485

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 159/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + +  G  E+  P +    LW  SG +D Y  
Sbjct: 100 MQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGYQEVKGPLMMDRVLWERSGHWDKYAD 159

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 160 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 218

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 219 RVRGFTQDDAHIFCTESQIQEEVTNCIKMVY-DTYQTFGFDNIVVKLSTRPEKRVGSD-- 275

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + MD P                I E   A Y    +     L
Sbjct: 276 ----EIWDQSEEALKQSLESMDIPY--------------EIQEGEGAFYGPKIEF---TL 314

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 315 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 364

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  L+NI           ++I  +L K G     D  
Sbjct: 365 FIGILIEEYAG---FFPTWLAPEQAVLMNITDKQS---GYVQEIVQKLQKSGIRAKADLR 418

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+
Sbjct: 419 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISS 478

Query: 445 NR 446
            +
Sbjct: 479 RK 480


>gi|300214322|gb|ADJ78738.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 649

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 154/386 (39%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + +L+ +SG +D Y ++M    
Sbjct: 265 GLPYWMPNGATIRRVIERYIIDKEVAWGFQHVYTPVLANLNLYKQSGHWDHYREDMFPPM 324

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      ++  H +SYR LP    ++ +  R E      G+ R RE 
Sbjct: 325 DMGDGEMLELRPMNCPSHIQVYNHHKRSYRELPLRIAELGMMHRYEKSGALTGLSRVREM 384

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D + F + P+  +     +      +++   +     R         LS+      D
Sbjct: 385 TLNDGHDF-IEPDHIEDEIKTLIKLMTEVYNDFDITDYRFR---------LSYR-----D 429

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S+     D + L     E   A Y    DV  +    +L   
Sbjct: 430 PKNTEKYFDDDEMWEKSQSKLKAAMDDMGLEYFEAEGEAAFYGPKIDVQTKT---ALGGE 486

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + GADG++H   M   GI   M    A +   +
Sbjct: 487 ETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMVHRGIVSTMERFTAYLTEMY 538

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +K  + +  D    + ++L   G  V  DD  E++G +  
Sbjct: 539 KGAFPTW---LAPHQVDIIPVK--NDLHMDYVNDLSSKLRAHGIRVTVDDRNEKMGYKIR 593

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A +   P  +++G + VS+  V ++
Sbjct: 594 QAQVNKIPYTLVIGDEEVSNGTVTVR 619


>gi|195147146|ref|XP_002014541.1| GL19239 [Drosophila persimilis]
 gi|198473694|ref|XP_001356405.2| GA18821 [Drosophila pseudoobscura pseudoobscura]
 gi|194106494|gb|EDW28537.1| GL19239 [Drosophila persimilis]
 gi|198138068|gb|EAL33469.2| GA18821 [Drosophila pseudoobscura pseudoobscura]
          Length = 754

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 168/409 (41%), Gaps = 44/409 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   I+ E  + G  E+  P + +A LW+ SG +  Y + 
Sbjct: 369 HELSPGSCFFQPRGAHIYNTLMGFIKSEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAEN 428

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ R
Sbjct: 429 MFSFEAEKEKFAL-KPMNCPGHCLIFDTRNRSWRELPLRMADFGVLHRNELSGALTGLTR 487

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F   PE  K S  K  + +L+  + +   +  +   + P          
Sbjct: 488 VRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKHVYTIFGFTFQLVLSTRP-----EKYLG 540

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L    + +    +   +F +P +    D             A Y    D+    + D+L
Sbjct: 541 ELEQWNDAEKALEESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDAL 585

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIE 330
               + +   ++    F    +++L     +   DG K   V +    +G++  + A++ 
Sbjct: 586 KRAHQCATIQLD----FQLPIRFNL----NYIADDGEKKRPVIIHRAILGSVERMIAILT 637

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYAR--LSKVGCDVFWDDMGEQ 387
            ++ GK   WP  ++P ++ ++ +  A+DQ  +   ++++A   +S+  CD      G+ 
Sbjct: 638 ENYAGK---WPFWLSPRQVMVVPVGPAYDQYAQTVKDQLHAAGFMSEADCDA-----GDT 689

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I 
Sbjct: 690 MNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVSELIT 738


>gi|153827549|ref|ZP_01980216.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|153829051|ref|ZP_01981718.1| threonyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|229514759|ref|ZP_04404220.1| threonyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229522960|ref|ZP_04412374.1| threonyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229526102|ref|ZP_04415506.1| threonyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229527753|ref|ZP_04417144.1| threonyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|254284959|ref|ZP_04959925.1| threonyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|148875480|gb|EDL73615.1| threonyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|149738482|gb|EDM52878.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|150424962|gb|EDN16739.1| threonyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|229334115|gb|EEN99600.1| threonyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229336260|gb|EEO01278.1| threonyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229340177|gb|EEO05185.1| threonyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229348739|gb|EEO13697.1| threonyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|327485485|gb|AEA79891.1| Threonyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
 gi|327485490|gb|AEA79896.1| Threonyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
          Length = 642

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   MD P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMDIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|154503764|ref|ZP_02040824.1| hypothetical protein RUMGNA_01588 [Ruminococcus gnavus ATCC 29149]
 gi|153795864|gb|EDN78284.1| hypothetical protein RUMGNA_01588 [Ruminococcus gnavus ATCC 29149]
          Length = 521

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 1/162 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   +FG  ++     ++   + K H V   S+G+ + R++ A+I    D  G+
Sbjct: 266 GKALQSGTSHFFGNAFADAYGISYSDKENKLHSVYETSWGL-STRIIGAIIMVHGDDSGL 324

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +  +I I  H +   D   ++ A L   G     DD  +  G +F+  +++
Sbjct: 325 VLPPHIAPVQTRVIPIAQHKEGVLDKANELLAALKAAGYRASIDDSEKSPGWKFSEQEMV 384

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P ++ +G K + + +V +  R T  +  ++++E+    S 
Sbjct: 385 GIPTRIEIGPKDIENGQVVVVRRDTREKIVVAMDELTEKLSE 426



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG  ++LP G    +N+ A + +    TG   + +P L   +L   E    + +  E+  
Sbjct: 79  KGCLNYLPNGYAIWENIQANLDKRFKETGVENVYLPVLIPENLLQKEKDHIEGFAPEVAW 138

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     +   +     PT E +  D++   ++SYR+LP  + Q    L++    RP    
Sbjct: 139 VTHGGMEELQERFCIRPTSETLFCDLWSKTVQSYRDLPKVWNQWCSVLRWEKTTRP---F 195

Query: 150 MRSREFLMKDAYSFDLTPE 168
           +RSREFL ++ ++   T E
Sbjct: 196 LRSREFLWQEGHTIHATYE 214


>gi|254282289|ref|ZP_04957257.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219678492|gb|EED34841.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 643

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 7/152 (4%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  + G+ H  + + G+  W P G      +   +RE+Q   G  E+  P 
Sbjct: 237 EAEKRDHRKIAKKLGLFHLQEEAPGMVFWHPAGWVIYQTIERYMREQQLAYGYEEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG  D +   M  L +D  D A+   P +      +F   +KSYR+LP   
Sbjct: 297 LVDYSLWQRSGHADKFADGMFMLKSDERDFAV--KPMNCPCHIQVFNQGLKSYRDLPLRL 354

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            +     R+E      G+MR R F+  DA+ F
Sbjct: 355 AEFGSCHRNEPSGSLHGIMRVRGFVQDDAHIF 386


>gi|107102275|ref|ZP_01366193.1| hypothetical protein PaerPA_01003332 [Pseudomonas aeruginosa PACS2]
          Length = 621

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G +E+  P +    LW  SG + +Y +
Sbjct: 236 LQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHGYVEVRTPQVVDRILWERSGHWSNYAE 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 NMFTTSSESRDYAV-KPMNCPCHVQIFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  K          L+++   G   I M+  + P   +G D
Sbjct: 355 RVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLQVYRDFGFTDIAMKLSTRPAKRVGSD 411


>gi|329954516|ref|ZP_08295607.1| threonine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328527484|gb|EGF54481.1| threonine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 646

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/429 (21%), Positives = 157/429 (36%), Gaps = 67/429 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGAALRIRLQEFLRRIQARYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +      I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K  + ++      +F  +  ++   +              I 
Sbjct: 380 RSFTQDDAHIF-CRPDQVKDEFLRVMDIISIVFQSMHFENFEAQ--------------IS 424

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D    + +   D                       E W     A  +   EK   +  
Sbjct: 425 LRDKVNREKYIGSD-----------------------ENWEKAEQAIIEACEEKGLKAKV 461

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      + GAD + H  V +    
Sbjct: 462 EYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMIHRAP 521

Query: 319 IGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            G+M R VA +IE +  GK  +W  PD VA   IS        +   D  +++   L + 
Sbjct: 522 FGSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------EKFNDYAQEVKDYLKRY 572

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                 D+  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E+  
Sbjct: 573 DVRAIVDERNEKIGRKIRDNEMKRIPYMLIVGEKEAENREVSVRKQGEGDQGTMKFEDFA 632

Query: 436 NYASHRFSN 444
              +    N
Sbjct: 633 KKVNEEVQN 641


>gi|260494526|ref|ZP_05814656.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260197688|gb|EEW95205.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 637

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 178/433 (41%), Gaps = 52/433 (12%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    + ++  G   +LP G    + +  + R+E  + G +++  P 
Sbjct: 236 EAEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLVDLWRKEHEKAGYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y +E +  ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNY-RENMYTSEIDEVEFAIKPMNCPGGVLAFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TP+  +                +G+ +
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEI-------------IGVVN 400

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           +  +  S   G     E+ +   T   +   S++  D    +     D +     I    
Sbjct: 401 LIDKFYSKLFG----FEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGD 456

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG 307
            A Y    D    K+ D+             +G ++  GT    ++LP     T+ G DG
Sbjct: 457 GAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFNLPERFDVTYIGEDG 500

Query: 308 KDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++   + G   +W   +AP ++ ++ I   +  C    +
Sbjct: 501 EKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVMTI---NDECVPYAK 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +I A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I+   +  
Sbjct: 555 EIMAKLDELGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNIRRFGSKD 614

Query: 426 REDMSLEEVINYA 438
           +   SL+E  NY 
Sbjct: 615 QFSKSLDEFYNYV 627


>gi|210623133|ref|ZP_03293599.1| hypothetical protein CLOHIR_01549 [Clostridium hiranonis DSM 13275]
 gi|210153810|gb|EEA84816.1| hypothetical protein CLOHIR_01549 [Clostridium hiranonis DSM 13275]
          Length = 482

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G   +    S+GI + R++  +I +  D +G+
Sbjct: 226 GKALQSGTSHFLGQHFTKAFDITFADREGGMSHPYHTSWGI-STRLIGGLIMTHSDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  +AP ++ +I I A+     +  +++YA L + G  V  DD      G +   +++
Sbjct: 285 VLPPRIAPTQVMIIPIAANKGGVMEKVDELYAALKEKGARVEVDDRPNYSTGYKLNDSEM 344

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            G P+++ +G K + +++  +  R T  +E +SL+ ++ Y +  F
Sbjct: 345 KGIPVRIEIGPKDIENNQAMVFRRDTLEKEAVSLDNLVEYVTGLF 389


>gi|15601053|ref|NP_232683.1| threonyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153817556|ref|ZP_01970223.1| threonyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|227811910|ref|YP_002811920.1| threonyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229506559|ref|ZP_04396068.1| threonyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510645|ref|ZP_04400125.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229517224|ref|ZP_04406669.1| threonyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229606038|ref|YP_002876742.1| threonyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254850514|ref|ZP_05239864.1| threonyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255745914|ref|ZP_05419861.1| threonyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262163529|ref|ZP_06031275.1| threonyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|298500133|ref|ZP_07009939.1| threonyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|22654144|sp|Q9KMN7|SYT_VIBCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783545|sp|C3LUV8|SYT_VIBCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9657684|gb|AAF96196.1| threonyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126511981|gb|EAZ74575.1| threonyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|227011052|gb|ACP07263.1| threonyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229345260|gb|EEO10233.1| threonyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229353090|gb|EEO18030.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229356910|gb|EEO21828.1| threonyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229372524|gb|ACQ62946.1| threonyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254846219|gb|EET24633.1| threonyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255735668|gb|EET91066.1| threonyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262028096|gb|EEY46755.1| threonyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|297542114|gb|EFH78165.1| threonyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 642

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   MD P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMDIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|258625495|ref|ZP_05720387.1| threonyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258582201|gb|EEW07058.1| threonyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 642

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   M+ P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMEIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP ++ ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQVVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|238855713|ref|ZP_04646009.1| threonine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260665499|ref|ZP_05866346.1| threonyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282934764|ref|ZP_06340004.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313471817|ref|ZP_07812309.1| threonine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238831659|gb|EEQ24000.1| threonine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239528573|gb|EEQ67574.1| threonine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260560767|gb|EEX26744.1| threonyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281301175|gb|EFA93479.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 643

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 164/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  E  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALEQVQEEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFDL----SYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N+ AH +  +    K+   L K G     D   E++G +
Sbjct: 533 KGAFPTW---LAPEQVEIIPVNLDAHGEYAK----KVRDELLKHGFRAEVDFRNEKMGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G   ++ + V ++   T  +E MSL++ IN
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNSNAVNVRPYGTEKQESMSLDQFIN 630


>gi|160880797|ref|YP_001559765.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160429463|gb|ABX43026.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 584

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 169/426 (39%), Gaps = 47/426 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +L L T M  +   G   +LP G    + +    R+   R G +E+S P + 
Sbjct: 194 RDHRKLGKELELFTFM--EEGPGFPFFLPKGMVIKNLLLDYWRKLHEREGYVEISTPMML 251

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + +LW  SG +D Y KE +     +D+     P +      ++ S  +SY+ LP  F ++
Sbjct: 252 NRNLWETSGHWDHY-KENMYQTKIDDEIYAIKPMNCPGGMLVYGSKPRSYKELPLRFGEL 310

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--- 191
            L  R E   +  G+MR R F   DA+ F +T E  K     +      ++ + G     
Sbjct: 311 GLVHRHEKSGQLHGLMRVRCFTQDDAHLF-MTEEQIKDEIKGVVRLIDEVYKKFGFTYHV 369

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            +  R E+  IG     E    A      +  + + M+ P      D             
Sbjct: 370 ELSTRPENS-IGSLEDWEIATDA------LKMALEEMELPYLINEGD------------- 409

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   L DS+    +  +  ++      FG +Y         GADG+ H 
Sbjct: 410 -GAFYGPKIDFH---LKDSIGRTWQCGSIQLDFQLPLRFGIEYI--------GADGEAHR 457

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + +     G++     ++   + G+   +P  +AP ++ ++ +    +   D  + I  
Sbjct: 458 PIMIHRVIFGSIERFFGILIEHYAGR---FPTWLAPVQVKILTV---SEQFNDYAQDILM 511

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G  V  D   E++G +   A L   P  +I+G   + + +V + +R  G      
Sbjct: 512 ELKQQGIRVSLDSRSEKLGYKVREARLDKIPYVLIIGQMEMENKQVSVWNREEGDLGGYV 571

Query: 431 LEEVIN 436
           +E++I+
Sbjct: 572 VEDLIS 577


>gi|332981193|ref|YP_004462634.1| Ser-tRNA(Thr) hydrolase [Mahella australiensis 50-1 BON]
 gi|332698871|gb|AEE95812.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Mahella
           australiensis 50-1 BON]
          Length = 637

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 174/453 (38%), Gaps = 55/453 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +  +H+   G   + P G    + +    R+E  + 
Sbjct: 230 EYLTRIEEAKQRDHRKLGQELDLFS--LHEEGPGFPFFHPKGMIIRNVLEDFWRKEHRKH 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW++SG +D Y K+ +     +D+     P +      +++  + S
Sbjct: 288 GYEEIKTPIILNKELWIQSGHWDHY-KDNMYFTKIDDQDYAIKPMNCPGSMIMYKRTMHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP    ++ L  R E      G+MR R F   DA+ F L  + +        +  + 
Sbjct: 347 YKELPIRLCELGLVHRHEKSGVLHGLMRVRCFTQDDAHIFMLPSQVTDEIIG--VIDLID 404

Query: 184 IFHRL-GLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            F+ L G K    +  R E   +G D   E      T   +V   K  +D+ +   +  F
Sbjct: 405 YFYSLFGFKYHVELSTRPEDS-MGTDEQWEMA----TEALKVALGKKGLDYKVNEGDGAF 459

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSL 296
                           Y    D H E   DS+        R  + G I   F    ++ L
Sbjct: 460 ----------------YGPKIDFHLE---DSI-------GRTWQCGTIQLDFQMPERFDL 493

Query: 297 PMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G D + H  V +     G++    A++   + G    W   +AP ++ ++ I 
Sbjct: 494 ----TYIGEDSEKHRPVMLHRVIFGSIERFIAILTEHYAGALPTW---LAPVQVKILPIT 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +    +   L ++      D+  E+IG +   A +   P  +++G K V +  
Sbjct: 547 DR---SLEYARSLQMHLEELDIRTELDNRNEKIGYKIRAAQIEKVPYMLVIGDKEVENVA 603

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           V ++ R  G    MS+++  N       + + +
Sbjct: 604 VSVRSRSKGDMGSMSVDDFENLIKTEIKSKKAI 636


>gi|114776996|ref|ZP_01452016.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114552517|gb|EAU54977.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 634

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/433 (21%), Positives = 159/433 (36%), Gaps = 71/433 (16%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + ++  + H  + + G+  W P G      V   IR   
Sbjct: 228 KAYLTRLEE----AEKRDHRKLAKSLDLFHLQEEAPGMIFWHPKGWSVWQQVENEIRGVM 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW +SG +D + +EM   +  N    I  P +      +F  +
Sbjct: 284 RDNGYQEIKTPQMVDRKLWEKSGHWDKFREEMFTTSTENRDYAI-KPMNCPCHIQVFNQN 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP    +     R+E      G+MR R F+  DA+ F    +      N + ++
Sbjct: 343 LHSYRDLPLRLAEFGSCHRNEPSGTLHGLMRLRNFVQDDAHIFCTEAQIQDEVCNFIDLT 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  ++ R G   +                 I L+D  E +V               TD  
Sbjct: 403 Y-DVYKRFGFDDV----------------IIFLSDRPEKRV--------------GTD-- 429

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT 292
                    EQW    AA     + K   +   P         IE      +G ++  GT
Sbjct: 430 ---------EQWDKAEAALHQALDSKGIEYGLNPGEGAFYGPKIEFSLKDCLGRVWQCGT 480

Query: 293 ---KYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               +S+P  + A +   D  +   V +    +G+M     ++   ++GK   W   +AP
Sbjct: 481 IQVDFSMPGKLDAEYVAEDSSRQTPVMLHRAILGSMERFIGILIEHYEGKFPFW---LAP 537

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++   NI        D   ++   + K G     D   E++G +     L   P  ++ 
Sbjct: 538 VQVVACNIT---DAQADYVAEVTKSMHKAGFRAEMDLRNEKVGYKVRAHTLARVPYILVA 594

Query: 407 GSKFVSDSKVEIK 419
           G +   D  + ++
Sbjct: 595 GDREREDGTISVR 607


>gi|331663198|ref|ZP_08364108.1| threonine--tRNA ligase [Escherichia coli TA143]
 gi|331683225|ref|ZP_08383826.1| threonine--tRNA ligase [Escherichia coli H299]
 gi|331058997|gb|EGI30974.1| threonine--tRNA ligase [Escherichia coli TA143]
 gi|331079440|gb|EGI50637.1| threonine--tRNA ligase [Escherichia coli H299]
          Length = 642

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|329577159|gb|EGG58629.1| threonine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 412

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 158/389 (40%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 29  GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 88

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 89  DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 149 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 193

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 194 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 250

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 251 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 302

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 303 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 355

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 356 KIRASQTQKVPYQLVVGDKEMEDATVNVR 384


>gi|313202757|ref|YP_004041414.1| ser-tRNA(thr) hydrolase; threonyL-tRNA synthetase [Paludibacter
           propionicigenes WB4]
 gi|312442073|gb|ADQ78429.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Paludibacter
           propionicigenes WB4]
          Length = 648

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 154/415 (37%), Gaps = 67/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +++ Q R    ++  P + +  L+V SG Y  YGK+  + 
Sbjct: 261 KGLPMWLPRGTALRLRLEDFLKKIQRRFDYQQVMTPHIGNKQLYVTSGHYAKYGKDSFQP 320

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +     +I++   +SY+ LP    +    +R E      G+ R R
Sbjct: 321 IHTPEEGEEYLLKPMNCPHHCEIYKFKPRSYKELPVRLAEFGTVYRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + K+      IF+ L  ++   +              I L
Sbjct: 381 SFTQDDAHIF-CRPDQVKDEFLKVMDIIFIIFNALEFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     +  +   EK   +  E
Sbjct: 426 RDPNNREKYIGSD-----------------------ENWEKAEQSIIEACAEKGLKARVE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + G D + H  V +     
Sbjct: 463 TGEAAFYGPKLDFMVRDAIGRKWQLGTIQVDYNLPERFELEYTGEDNQKHRPVMIHRAPF 522

Query: 320 GAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G+M R VA +IE +  GK  +W  PD V    IS        +   D   +I   ++   
Sbjct: 523 GSMERFVAVLIEHTA-GKFPLWLTPDQVVILPIS--------EKFNDYAFQIAKEMNAQD 573

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             V  DD  E+IG +    +L   P  +IVG K   + +V ++ +  G +  M +
Sbjct: 574 IRVQVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKV 628


>gi|257087763|ref|ZP_05582124.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995793|gb|EEU83095.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVRNYS 644


>gi|90961470|ref|YP_535386.1| threonyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|122993083|sp|Q1WUN2|SYT_LACS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|90820664|gb|ABD99303.1| Threonyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 649

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 154/386 (39%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + +L+ +SG +D Y ++M    
Sbjct: 265 GLPYWMPNGATIRRVIERYIIDKEVAWGFQHVYTPVLANLNLYKQSGHWDHYREDMFPPM 324

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      ++  H +SYR LP    ++ +  R E      G+ R RE 
Sbjct: 325 DMGDGEMLELRPMNCPSHIQVYNHHKRSYRELPLRIAELGMMHRYEKSGALTGLSRVREM 384

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D + F + P+  +     +      +++   +     R         LS+      D
Sbjct: 385 TLNDGHDF-IEPDHIEDEIKTLIKLMTEVYNDFDITDYRFR---------LSYR-----D 429

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S+     D + L     E   A Y    DV  +    +L   
Sbjct: 430 PKNTEKYFDDDEMWEKSQSKLKAAMDDMGLEYFEAEGEAAFYGPKIDVQTKT---ALGGE 486

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + GADG++H   M   GI   M    A +   +
Sbjct: 487 ETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMVHRGIVSTMERFTAYLTEMY 538

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +K  + +  D    + ++L   G  V  DD  E++G +  
Sbjct: 539 KGAFPTW---LAPHQVDIIPVK--NDLHMDYVNDLSSKLRAHGIRVTVDDRNEKMGYKIR 593

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A +   P  +++G + VS+  V ++
Sbjct: 594 QAQVNKIPYTLVIGDEEVSNGTVTVR 619


>gi|325845496|ref|ZP_08168787.1| proline--tRNA ligase [Turicibacter sp. HGF1]
 gi|325488515|gb|EGC90933.1| proline--tRNA ligase [Turicibacter sp. HGF1]
          Length = 476

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/407 (20%), Positives = 163/407 (40%), Gaps = 75/407 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+   + ++   TG   + +P L   + L  E+   + +  E+  
Sbjct: 36  KGCMIIRPYGYAIWENIQQYLDQKFKETGHENVYMPMLIPESLLQKEADHVEGFAPEVAW 95

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     ++  + ++  PT E +  D +   I+SY +LP  + Q    +++    RP    
Sbjct: 96  VTHGGNEKLSERLVVRPTSETLFCDHYSKIIQSYNDLPKKYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   T E ++     M  +Y ++                         
Sbjct: 153 LRTTEFLWQEGHTVHATAEEAEEETLLMLNTYAKM------------------------- 187

Query: 210 FIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                          ++F+  P+   + T+ +             A Y   S +H+ K  
Sbjct: 188 --------------CEEFLAIPVLKGQKTEKEKFAGAQ-------ATYTIESLMHDGKAL 226

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            S              G    FGT ++      +   + K  Y    S+G+   R++ A+
Sbjct: 227 QS--------------GTSHNFGTGFAKAFDIKYSDKNSKMQYAHQTSWGV-TTRLIGAI 271

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           I    D  G++ P  VAP ++ +I I AH + V   ACE +  RL+ V   V  D   + 
Sbjct: 272 IMVHGDSSGLVLPPRVAPTQVMIIPIAAHKEGVIEKACE-LQTRLASVA-RVKCDTSDKT 329

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +F+  ++ G P++V +G K + +++  +  R T  +  +SL+++
Sbjct: 330 PGWKFSEYEMKGIPVRVEIGPKDIENNQAVLVRRDTREKIIVSLDDL 376


>gi|262164341|ref|ZP_06032079.1| threonyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262026721|gb|EEY45388.1| threonyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 642

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   MD P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMDIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|256960954|ref|ZP_05565125.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256951450|gb|EEU68082.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 644


>gi|195578689|ref|XP_002079196.1| GD23818 [Drosophila simulans]
 gi|194191205|gb|EDX04781.1| GD23818 [Drosophila simulans]
          Length = 747

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 170/409 (41%), Gaps = 44/409 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   I+ E  + G  E+  P + +A LW+ SG ++ Y + 
Sbjct: 362 HELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVISPNIYNAKLWMTSGHWEHYAEN 421

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ R
Sbjct: 422 MFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTR 480

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F   PE  K S  K  + +L+  + +   S  +   + P      +   
Sbjct: 481 VRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKYVYTIFGFSFQLVLSTRP-----DNYLG 533

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L    + +   ++   +F +P +    D             A Y    D+    + D+L
Sbjct: 534 ELEQWNDAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDAL 578

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIE 330
               + +   ++    F    +++L    ++   DG K   V +    +G++  + A++ 
Sbjct: 579 KRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAILT 630

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIY--ARLSKVGCDVFWDDMGEQ 387
            +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++    +S+  CD      G+ 
Sbjct: 631 ENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQAVRDQLHDAGFMSEADCDA-----GDT 682

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I 
Sbjct: 683 MNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELIT 731


>gi|195351005|ref|XP_002042027.1| GM26732 [Drosophila sechellia]
 gi|194123851|gb|EDW45894.1| GM26732 [Drosophila sechellia]
          Length = 747

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 170/409 (41%), Gaps = 44/409 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   I+ E  + G  E+  P + +A LW+ SG ++ Y + 
Sbjct: 362 HELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVISPNIYNAKLWMTSGHWEHYAEN 421

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ R
Sbjct: 422 MFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTR 480

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F   PE  K S  K  + +L+  + +   S  +   + P      +   
Sbjct: 481 VRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKYVYTIFGFSFQLVLSTRP-----DNYLG 533

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L    + +   ++   +F +P +    D             A Y    D+    + D+L
Sbjct: 534 ELEQWNDAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDAL 578

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIE 330
               + +   ++    F    +++L    ++   DG K   V +    +G++  + A++ 
Sbjct: 579 KRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAILT 630

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIY--ARLSKVGCDVFWDDMGEQ 387
            +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++    +S+  CD      G+ 
Sbjct: 631 ENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQAVRDQLHDAGFMSEADCDA-----GDT 682

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I 
Sbjct: 683 MNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELIT 731


>gi|156974364|ref|YP_001445271.1| threonyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166225516|sp|A7N009|SYT_VIBHB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|156525958|gb|ABU71044.1| hypothetical protein VIBHAR_02079 [Vibrio harveyi ATCC BAA-1116]
          Length = 642

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 152/397 (38%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +R + +  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFVRSKLDEYGYQEVKGPLIMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSEN-REYALKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTESQIQEEVTNCIKMVY-DTYQTFGFDNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + M+ P                I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQSLESMEIPY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP ++ L+NI        D  +++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQVILMNITDKQS---DYVQEVVQKLQKSGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTR 612


>gi|153808043|ref|ZP_01960711.1| hypothetical protein BACCAC_02329 [Bacteroides caccae ATCC 43185]
 gi|149129652|gb|EDM20866.1| hypothetical protein BACCAC_02329 [Bacteroides caccae ATCC 43185]
          Length = 646

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 158/432 (36%), Gaps = 73/432 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQDFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F   P+  K         +LR+   + +                      
Sbjct: 380 RSFTQDDAHIF-CRPDQVKD-------EFLRVMDIISI---------------------- 409

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFD 269
                   VF S +F +F          D ++    +   + W     A  +   EK   
Sbjct: 410 --------VFRSMNFQNF---EAQISLRDKVNREKYIGSDDNWEKAEQAIIEACEEKGLP 458

Query: 270 SLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMG 315
           +  E    +  G +        +G  +  GT    Y+LP      + G+D + H  V + 
Sbjct: 459 AKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIH 518

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               G+M R VA +IE +  GK  +W  P+ V    IS        +   D  E++   L
Sbjct: 519 RAPFGSMERFVAVLIEHTA-GKFPLWLTPEQVVILPIS--------EKFNDYAEQVKMYL 569

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                    DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  E
Sbjct: 570 KTHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKFE 629

Query: 433 EVINYASHRFSN 444
           E     +    N
Sbjct: 630 EFAKILNEEVQN 641


>gi|257885297|ref|ZP_05664950.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257821149|gb|EEV48283.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 155/389 (39%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 260 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPM 319

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLVLRPMNCPHHMMVYKNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 425 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTE 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 482 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 533

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  ++ AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 534 YKGAFPTW---LAPIQATIIPVSVDAHG----DYAYEIKERLQTKGLRVEVDDRNEKMGY 586

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 587 KIRASQTQKIPYQLVVGDKELEDATVNVR 615


>gi|257421590|ref|ZP_05598580.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|257163414|gb|EEU93374.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 644


>gi|256763421|ref|ZP_05504001.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256958077|ref|ZP_05562248.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|257079964|ref|ZP_05574325.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256684672|gb|EEU24367.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256948573|gb|EEU65205.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256987994|gb|EEU75296.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 644


>gi|29377326|ref|NP_816480.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255971805|ref|ZP_05422391.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256854147|ref|ZP_05559512.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|73919789|sp|Q830D0|SYT_ENTFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29344793|gb|AAO82550.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255962823|gb|EET95299.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256711090|gb|EEU26133.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|323481721|gb|ADX81160.1| threonyl-tRNA synthetase [Enterococcus faecalis 62]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 158/389 (40%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVR 617


>gi|156839714|ref|XP_001643545.1| hypothetical protein Kpol_1008p26 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114160|gb|EDO15687.1| hypothetical protein Kpol_1008p26 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 674

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 134/338 (39%), Gaps = 70/338 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+SYR+LP    Q     R E +     +R+REFL ++ ++  L  
Sbjct: 277 PTSETVMYPYYAKWIQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTVFLNE 336

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y  ++  L   ++P                +V     E + F   DF
Sbjct: 337 KEAQEEVLQILDFYAGVYEEL--LAVP----------------VVKGKKTEKEKFAGGDF 378

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              + VE +                  +P+    + RGI+    
Sbjct: 379 ------------------TTTVEGY------------------IPQ----TGRGIQGATS 398

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +   G DH   +    S+G+ + RV+  ++    D KG++ P  V
Sbjct: 399 HHLGQNFSKMFNLSVENPLGPDHPKIFAYQNSWGL-STRVIGVMVMIHSDNKGLVIPPRV 457

Query: 345 APFKISLINIKAHDQVCRDACEKIY-------ARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           + F+  ++ +    +   +  +KI+       +RL K     F D +     G +FA  +
Sbjct: 458 SQFQAVVVPVGITKKTSEEQRKKIHEAARDVESRLKKSDVRAFGDYNDNYTPGWKFAQYE 517

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G PL+V +G K + +S+V +  R    +  + L E+
Sbjct: 518 LKGIPLRVEMGPKDIEESQVTVVRRNDSRKYTVKLSEL 555


>gi|297279894|ref|XP_002808285.1| PREDICTED: LOW QUALITY PROTEIN: threonyl-tRNA synthetase,
           mitochondrial-like [Macaca mulatta]
          Length = 669

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 168/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E  R G  E+  PT
Sbjct: 247 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPT 306

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 307 LFSTKLWEQSGHWEHYQEDMFAVQPSGSDRPASSQSDDSTRHTTDILALKPMNCPAHCLM 366

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 367 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 426

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G         L D  E QV   +   +F 
Sbjct: 427 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP------CLWDQAE-QVL-QRALKEFG 474

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P +    D             A Y    DVH   L D+L        R  + G I    
Sbjct: 475 EPWDLNSGDG------------AFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 509

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF+
Sbjct: 510 LDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQ 566

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I +    ++  R+A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 567 VVVIPVGTEQEEYAREAQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVG 623

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 624 QKEQSKRTVNIRTR 637


>gi|256963904|ref|ZP_05568075.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256954400|gb|EEU71032.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 644


>gi|71033673|ref|XP_766478.1| threonyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68353435|gb|EAN34195.1| threonyl-tRNA synthetase,  putative [Theileria parva]
          Length = 779

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           HS G   WLP G K  + +   +R+     G  E+  P + S DLW +SG YD+Y KE +
Sbjct: 395 HSPGSCFWLPNGAKIYNRLVEFMRDNYRIRGYQEVITPNIFSCDLWKQSGHYDNY-KENM 453

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            L +  D      P +      +F+    SY+ LP       +  R+EL     G+ R R
Sbjct: 454 YLFNLEDTEWGMKPMNCPGHCLMFKHLFLSYKQLPLRLADFGVLHRNELTGSLSGLTRVR 513

Query: 154 EFLMKDAYSF 163
            F   DA+ F
Sbjct: 514 RFQQDDAHIF 523


>gi|330720856|gb|EGG99050.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 639

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 162/445 (36%), Gaps = 63/445 (14%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E + RD    + KL L    + + + G+  W   G      V   +R+ 
Sbjct: 227 KQLKKYLNFLEEASKRDHRKLAKKLDLFH--LQEEAPGMVFWHAKGWSIYQTVEQYMRKV 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  G  E+  P L    LW  SG  D +G EM      N K     P +      +F  
Sbjct: 285 QHDNGYQEIKTPQLVDFSLWERSGHADKFGDEMFSSHSEN-KDYAVKPMNCPCHVQVFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP    +     R+E      G+MR R F+  DA+ F    E         F+
Sbjct: 344 GLRSYRDLPLRLAEFGCCHRNEPSGTLQGLMRVRGFVQDDAHIF--CAESQIQDEVASFI 401

Query: 180 SYL-RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  ++   G   + ++  + P     S E    A+        +K       P E   
Sbjct: 402 DLLYSVYQDFGFDDVLVKLSTRPEKRVGSDEVWDKAEEALQLALDNKGIAWELQPGEGAF 461

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
           +   I  +                    L D L             G ++  GT    +S
Sbjct: 462 YGPKIEFS--------------------LRDCL-------------GRVWQCGTIQVDFS 488

Query: 296 LP--MSATFKGADGKD------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           +P  + A +   DG        H   +GS+     R +  +IE         +P  +AP 
Sbjct: 489 MPGRLDAQYVAEDGSRQVPVMLHRAILGSF----ERFIGILIEHFAGA----FPAWLAPE 540

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +++NI        + C  +   L   G  VF D   E+IG +     +   P  ++VG
Sbjct: 541 QAAIVNITDSQA---EYCRNVEKTLRNKGFRVFSDLRNEKIGFKIREHSIQKIPYVLVVG 597

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLE 432
            K +   ++ ++ +       MS+E
Sbjct: 598 DKEMEAGQIAVRTQKGEDLGSMSIE 622


>gi|295109529|emb|CBL23482.1| prolyl-tRNA synthetase, family I [Ruminococcus obeum A2-162]
          Length = 477

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 153/405 (37%), Gaps = 70/405 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG  +  P G    +N+   +      TG   + +P  +  + L  E    + +  E+  
Sbjct: 36  KGCMAIKPAGYAIWENIQHELDSRFKETGVQNVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     +   + +   PT E +  D ++  I+S+R+LP  + Q    +++    RP    
Sbjct: 96  VTHGGLNELQERLCVRPTSETLFCDFYQKDIQSHRDLPKVYNQWCSVVRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +RSREFL ++ ++   T E ++    +M   Y                            
Sbjct: 153 LRSREFLWQEGHTAHATAEEAEERTIQMLNLY---------------------------- 184

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               AD      FC +      I  + TD +             A Y   S +H+ K   
Sbjct: 185 ----AD------FCEEVLAIPVIKGQKTDKEKFAGA-------VATYTIESLMHDGKALQ 227

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S              G    FG  ++      +   D    YV   S+G+   R++ A+I
Sbjct: 228 S--------------GTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGM-TTRMIGAII 272

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               D  G++ P  +AP +  +I I+   +   +  ++++A L   G  V  DD     G
Sbjct: 273 MVHGDNSGLVLPPRIAPTQAVIIPIQQRKEGVLEKADELFAALKAAGIRVKVDDTDRSPG 332

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +FA  ++ G P+++  G K + + +  I  R T  +  +S +E+
Sbjct: 333 FKFAEQEMRGIPVRIECGPKDIENGQAVICRRDTREKYVVSFDEL 377


>gi|293382457|ref|ZP_06628392.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|293387159|ref|ZP_06631720.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|312906512|ref|ZP_07765514.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312910456|ref|ZP_07769302.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|291080141|gb|EFE17505.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|291083430|gb|EFE20393.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|310627455|gb|EFQ10738.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311289228|gb|EFQ67784.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|218548710|ref|YP_002382501.1| threonyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226701412|sp|B7LQ71|SYT_ESCF3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218356251|emb|CAQ88868.1| threonyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|324113470|gb|EGC07445.1| threonyl-tRNA synthetase [Escherichia fergusonii B253]
          Length = 642

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 625


>gi|315026573|gb|EFT38505.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVRNYS 659


>gi|307286857|ref|ZP_07566939.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306502072|gb|EFM71358.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|315156485|gb|EFU00502.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315166285|gb|EFU10302.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315169145|gb|EFU13162.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1341]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|282850470|ref|ZP_06259849.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579963|gb|EFB85367.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 636

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 159/405 (39%), Gaps = 67/405 (16%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I +   G   +LP G    + +    RE  +     E+  P + S  LW  SG +D Y 
Sbjct: 256 VIKEEGPGFPFFLPKGMALRNELENFWREVHHDFDYEEIRTPIILSKHLWETSGHWDHY- 314

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +     +D+     P +      ++++ + SYR+ P  + ++ L  R EL     G+
Sbjct: 315 RENMYTTIIDDEEYAIKPMNCPGGILVYQNEMHSYRDFPLRYAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSH 208
            R R F   DA+ F + P+  +    K+   + RI+ + GLK  + +  +     GD + 
Sbjct: 375 FRVRAFTQDDAHVF-MLPDQMQTELMKVIELFDRIYSQFGLKYHVELSTKPDNAMGDDA- 432

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS-------- 260
                                  I  + TD     +L + +E    PY            
Sbjct: 433 -----------------------IWEQATD-----ALRNAIEAKGIPYVINPGDGAFYGP 464

Query: 261 --DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMG 315
             D H E   DSL        R  + G I       +LP      + G DG+ H  + + 
Sbjct: 465 KLDYHIE---DSL-------GRTWQCGTI---QLDMNLPERFQIEYIGEDGQKHRPIMIH 511

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSK 374
               G+M     ++   + G    +P  +AP ++ ++ I + H +  ++  ++++    +
Sbjct: 512 RACFGSMERFIGILTEHYAGA---FPTWMAPVQVKILPISEKHVEYAKELAKQMHRDYVR 568

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      DD  E+IG +   A +   P  ++VG K V +  V ++
Sbjct: 569 VEV----DDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVR 609


>gi|224539835|ref|ZP_03680374.1| hypothetical protein BACCELL_04745 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518545|gb|EEF87650.1| hypothetical protein BACCELL_04745 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 519

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 159/431 (36%), Gaps = 73/431 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  + 
Sbjct: 134 KGLPMWLPKGTALRLRLQEFLRRIQARYDYQEVITPPIGNKLLYITSGHYAKYGKDSFQP 193

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      I+++  +SY++LP    +     R E      G+ R R
Sbjct: 194 IHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVR 253

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K         +LR+   + + SI  R+                
Sbjct: 254 SFTQDDAHIF-CRPDQVKD-------EFLRV---MDIISIVFRS---------------- 286

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFDS 270
                         MDF          D ++    +   E W     +  +   EK   +
Sbjct: 287 --------------MDFANVEAQISLRDKVNREKYIGSDENWERAEQSIIEACEEKGLSA 332

Query: 271 LPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGS 316
             E    +  G +        +G  +  GT    Y+LP      + GAD + H  V +  
Sbjct: 333 RIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYTGADNQKHRPVMIHR 392

Query: 317 YGIGAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              G+M R VA +IE +  GK  +W  P+ VA   IS        +   D  +++   L 
Sbjct: 393 APFGSMERFVAVLIEHTA-GKFPLWLTPEQVAILPIS--------EKFNDYAQEVKKFLK 443

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +       D+  E+IG +    +L   P  +IVG K   + +V ++ +  G +  M  EE
Sbjct: 444 QYDIRAIVDERNEKIGRKIRDNELKRIPYMLIVGEKEAENREVSVRKQGEGDKGTMKFEE 503

Query: 434 VINYASHRFSN 444
                +    N
Sbjct: 504 FAKILNEEVQN 514


>gi|161528166|ref|YP_001581992.1| prolyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|160339467|gb|ABX12554.1| prolyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 480

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 91/203 (44%), Gaps = 15/203 (7%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEK----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           I  N++ E+   P         EK    ++ +  E+     + +++G   + G  +S P 
Sbjct: 184 IYKNTVEEELAIPVTTGKKSEKEKFVGAVYTTTMESIMPDGKALQMGTSHFLGQNFSKPF 243

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F   D  +H+    S+G+ + R++ A+I +  D +G++ P  VAP ++ ++ I  +D
Sbjct: 244 EVKFADKDNVEHFAWQTSWGV-SWRLIGAMIMAHGDDQGLVLPPKVAPTQVVIVPIYRND 302

Query: 359 Q-------VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +         ++  E + A+  +V  D   D  G   G +F   ++ G P+++ +G K +
Sbjct: 303 EGRDKVLPKVKEIQESLEAKDIRVQVD---DRQGLSPGYKFNDWEMKGVPIRIEIGPKDI 359

Query: 412 SDSKVEIKHRLTGIREDMSLEEV 434
               + +  R    + ++   E+
Sbjct: 360 EKQSIVVAKRYNREKTNLQFSEI 382


>gi|331085681|ref|ZP_08334764.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406604|gb|EGG86109.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 643

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 174/447 (38%), Gaps = 51/447 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L T  I +   G   +LP G    + +    RE   R 
Sbjct: 229 EYLAKIEEAKKRDHRKLGKELGLFT--ILEEGPGFPIFLPKGMILKNTLIDYWREVHTRA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           G +E+S P + +  LW  SG +  Y + M   + D  D A+   P +      ++++   
Sbjct: 287 GYVEISTPIMLNKQLWETSGHWAHYKENMYTTVIDEEDFAI--KPMNCPGGILVYKTEPH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++    R E      G+MR R F   DA+ F +T E  K     +     
Sbjct: 345 SYRDLPLRMGELGTVHRHEKSGALHGLMRVRSFTQDDAHIF-MTREQIKDEIKGVARLID 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K                  + V   T       S++  D    +  +  D++
Sbjct: 404 EVYSLFGFK------------------YHVELSTKPEDSMGSQEDWDIATDALRSALDEL 445

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SA 300
                I E   A Y    D H E   D+L        R  + G I      + LP+    
Sbjct: 446 QLPYVINEGDGAFYGPKIDFHLE---DTL-------GRTWQCGTI---QLDFQLPLRFEM 492

Query: 301 TFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
            +  ADG+ H  + +     G++ R +  +IE         +P  +AP ++ ++ I + +
Sbjct: 493 EYIAADGEKHRPIMVHRVVFGSIERFIGILIEHFAGA----FPTWLAPEQVKVLPISEKY 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   K+  + +K+ C V  D+  E+IG +   A L   P  ++VG+K   +  V 
Sbjct: 549 HEYANEVAAKL--KEAKIRCSV--DERSEKIGYKIRDARLNKIPYMLVVGAKEQEEGVVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R  G     SL+  I   +    N
Sbjct: 605 VRSRFLGDEGQRSLDTFIAEITEEIKN 631


>gi|329963564|ref|ZP_08301043.1| proline--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328528553|gb|EGF55524.1| proline--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 497

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  + ++     EK   I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++ G P+++++G + + ++ +EI  R T  +E  S E +  Y
Sbjct: 355 YEVKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCEGIEEY 397



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|315033108|gb|EFT45040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0017]
          Length = 672

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 158/389 (40%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 289 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 348

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 349 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 408

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 409 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 453

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 454 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 510

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 511 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 562

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 563 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 615

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 616 KIRASQTQKVPYQLVVGDKEMEDATVNVR 644


>gi|257420184|ref|ZP_05597178.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257162012|gb|EEU91972.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 644


>gi|255974800|ref|ZP_05425386.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256616698|ref|ZP_05473544.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|257081588|ref|ZP_05575949.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257084237|ref|ZP_05578598.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257417026|ref|ZP_05594020.1| threonyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|255967672|gb|EET98294.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256596225|gb|EEU15401.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256989618|gb|EEU76920.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256992267|gb|EEU79569.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257158854|gb|EEU88814.1| threonyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|295113730|emb|CBL32367.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterococcus sp.
           7L76]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 158/389 (40%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 382 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 427 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 484 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 536 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 589 KIRASQTQKVPYQLVVGDKEMEDATVNVR 617


>gi|227890560|ref|ZP_04008365.1| threonyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867498|gb|EEJ74919.1| threonyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 649

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 154/386 (39%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + +L+ +SG +D Y ++M    
Sbjct: 265 GLPYWMPNGATIRRVIERYIIDKEVAWGFQHVYTPVLANLNLYKQSGHWDHYREDMFPPM 324

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      ++  H +SYR LP    ++ +  R E      G+ R RE 
Sbjct: 325 DMGDGEMLELRPMNCPSHIQVYNHHKRSYRELPLRIAELGMMHRYEKSGALTGLSRVREM 384

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D + F + P+  +     +      +++   +     R         LS+      D
Sbjct: 385 TLNDGHDF-IEPDHIEDEIKTLIKLMTEVYNDFDITDYRFR---------LSYR-----D 429

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S+     D + L     E   A Y    DV  +    +L   
Sbjct: 430 PKNTEKYFDDDEMWEKSQSKLKAAMDDMGLEYFEAEGEAAFYGPKIDVQTKT---ALGGE 486

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + GADG++H   M   GI   M    A +   +
Sbjct: 487 ETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMVHRGIVSTMERFTAYLTEMY 538

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +K  + +  D    + ++L   G  V  DD  E++G +  
Sbjct: 539 KGAFPTW---LAPHQVDIIPVK--NDLHMDYVNDLSSKLRAHGIRVTVDDRNEKMGYKIR 593

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A +   P  +++G + VS+  V ++
Sbjct: 594 QAQVNKIPYTLVIGDEEVSNGTVTVR 619


>gi|153803259|ref|ZP_01957845.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124121199|gb|EAY39942.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 516

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 146/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + N  G  E+  P +    LW  SG +D Y  
Sbjct: 131 MQQEAPGMVFWHHNGWSVFRDLEIFIRHKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 190

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 191 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 249

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 250 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 306

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   MD P                I E   A Y    +     L
Sbjct: 307 ----EIWDKSEQALIDSLKAMDIPF--------------EIQEGEGAFYGPKIEF---TL 345

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 346 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 395

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 396 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 449

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 450 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 486


>gi|312198148|ref|YP_004018209.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311229484|gb|ADP82339.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 411

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 155/397 (39%), Gaps = 58/397 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   IR  + R G   +  P L   +L+  SG +  Y  +M    
Sbjct: 23  GLPYWLPDGATVRHTLEEYIRAVERRAGYQHVYSPVLGKRELYEISGHWSHYSDDMFPPM 82

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D   + ++  P+       I+RS   SYR LP    ++   +R EL     G+ R R   
Sbjct: 83  DLGGEQVVLRPSLCPHHALIYRSRSHSYRELPLRIAELGGMYRSELSGVLGGLTRVRAIQ 142

Query: 157 MKDAYSFDLTPEGS----------KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           + DA+ F    + +          +H+Y  + ++  R  +RL L         GP G   
Sbjct: 143 LNDAHIFCTLEQVADEARAALDLIRHAYEALGLTPSR--YRLSLP--------GPGG--- 189

Query: 207 SHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +++   D     V    + +D   +P E  + +             A Y    DV   
Sbjct: 190 --KYVAAPDLWRRSVALLTEVLDRSGLPYEAAEGE------------AAFYGPKIDV--- 232

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRV 324
           ++ D       +S   I+    F+   ++ L     + G DG  H  V +    IG++  
Sbjct: 233 QVTDGAGRESTLSTVQID----FHQPERFDL----RYVGPDGARHRPVMVHRSIIGSVER 284

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A +   H G    W   +AP ++ ++ I A +     A  +  A L  +   V   D 
Sbjct: 285 AVAHLLEQHGGALPAW---LAPIQLVILPISASELPAAVALTRRCADLG-LRAQVLGPDR 340

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G  +G++  +A L+  P Q ++G+K  SD  V ++ R
Sbjct: 341 G-SLGARVRLARLV--PYQAVLGAKEASDGHVSLRLR 374


>gi|84998192|ref|XP_953817.1| threonyl-tRNA synthetase [Theileria annulata]
 gi|65304814|emb|CAI73139.1| threonyl-tRNA synthetase, putative [Theileria annulata]
          Length = 743

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           HS G   WLP G K  + +   +R+     G  E+  P + S DLW +SG YD+Y KE +
Sbjct: 343 HSPGSCFWLPNGAKIYNRLVEFMRDNYRVRGYQEVITPNIFSCDLWKQSGHYDNY-KENM 401

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            L +  D      P +      +F+    SY+ LP       +  R+EL     G+ R R
Sbjct: 402 YLFNLEDTEWGMKPMNCPGHCLMFKHLFLSYKQLPLRLADFGVLHRNELTGSLSGLTRVR 461

Query: 154 EFLMKDAYSF 163
            F   DA+ F
Sbjct: 462 RFQQDDAHIF 471


>gi|327536012|gb|AEA94846.1| threonine--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|325497120|gb|EGC94979.1| threonyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 652

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 154/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y  
Sbjct: 266 MQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 326 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 384

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 385 RVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 441

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 442 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 480

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 481 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 530

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +LS  G  V  D  
Sbjct: 531 FIGILTEEFAG---FFPTWLAPVQVVIMNITDSQS---EYVNELTQKLSNAGIRVKADLR 584

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 585 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 635


>gi|315148859|gb|EFT92875.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4244]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|307272094|ref|ZP_07553357.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306511210|gb|EFM80217.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|294779531|ref|ZP_06744926.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300861074|ref|ZP_07107161.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307268336|ref|ZP_07549717.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307276154|ref|ZP_07557285.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|294453410|gb|EFG21817.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300850113|gb|EFK77863.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306507148|gb|EFM76287.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306515362|gb|EFM83896.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|315036305|gb|EFT48237.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0027]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|227554282|ref|ZP_03984329.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229544818|ref|ZP_04433543.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|307289786|ref|ZP_07569723.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|227176572|gb|EEI57544.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229310090|gb|EEN76077.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|306499171|gb|EFM68649.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315030800|gb|EFT42732.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4000]
 gi|315575247|gb|EFU87438.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315582393|gb|EFU94584.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|167957340|ref|ZP_02544414.1| glycyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 473

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 147/350 (42%), Gaps = 70/350 (20%)

Query: 100 NDKAMIY--GPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           ND ++ Y    T + + T+ F++ + S Y NLPF   Q    FR+E+ PR  V RSREF 
Sbjct: 180 NDASISYLRPETAQGIFTN-FKNVVDSFYPNLPFGIAQQGKAFRNEIAPRDFVFRSREFE 238

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F + PE  + +++++  S       LGLK             +  HE  V A  
Sbjct: 239 QMEIEYF-VDPEHWQEAFDELLASTHAFLAELGLKP------------EHIHELDVPA-- 283

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E +   SK  +D        ++D  I    ++      Y    D+ N          +R
Sbjct: 284 -EDRAHYSKKTIDI-------EYDYPIGCEELM---GIAYRTDFDLMN---------IQR 323

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVI----- 329
            S + +E                 T KG + K   H ++      G  R + AV+     
Sbjct: 324 ASGKSMEY----------------TVKGTNTKFVPHVIEPS---FGVERALMAVLSGAYR 364

Query: 330 ESSHDGKGIIW---PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD-VFWDDMG 385
           E   +G+  ++   P+ +AP K ++  +  +     +   ++YA+L+K     V WDD G
Sbjct: 365 EDEQNGEKRVYLALPEHLAPVKFAVSPLLKNKPELVEKAREVYAQLAKANPGRVMWDDNG 424

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             IG ++   D +G P  V+V  + + D  V ++ R T  +  + +EE++
Sbjct: 425 -NIGKRYRRQDEIGTPHCVVVDFQTLEDGTVTVRERDTTEQRRVKVEELL 473


>gi|90417791|ref|ZP_01225703.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337463|gb|EAS51114.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 659

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 12/206 (5%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  + + G   W P G +    + + +R  Q  
Sbjct: 236 YLHMLEE----AEKRDHRRLGREMDLFHFQEDAPGTVFWHPKGWRLYQTLVSYVRRRQEA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P L    LW  SG ++ Y ++M      +++     P +      IF+  +K
Sbjct: 292 EGYQEVNAPQLLERSLWETSGHWEKYHEDMFVTETEDERVFALKPMNCPGHVQIFKHGLK 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F  T E       K+    L
Sbjct: 352 SYRDLPLKIAEFGAVHRYEPSGALHGLMRVRAFTQDDAHVF-CTEEQITAESLKINDLIL 410

Query: 183 RIFHRLGLKSIPMRAESGP---IGGD 205
            I+   G + + ++  + P   +G D
Sbjct: 411 SIYRDFGFEDVLVKLSTRPEKRVGSD 436


>gi|157803434|ref|YP_001491983.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|166225493|sp|A8EXW5|SYT_RICCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157784697|gb|ABV73198.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 635

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + ++G+  W   G    + V   IR++  + G  E+  P L    LW  SG ++ +   
Sbjct: 256 QEEAQGMVFWHDKGWSIYNIVEQYIRKKIRKNGYTEVKTPVLVDKRLWEASGHWEKFRDN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L + ++K +   P +      IF+  IKSYR+LP    +  L  R+E      G+MR
Sbjct: 316 MFAL-EADNKILALKPMNCPCHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMR 374

Query: 152 SREFLMKDAYSF 163
            R  +  DA+ F
Sbjct: 375 VRSLVQDDAHIF 386


>gi|315158985|gb|EFU03002.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0312]
          Length = 660

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|309805541|ref|ZP_07699586.1| anticodon binding domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|309807191|ref|ZP_07701165.1| anticodon binding domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|309808834|ref|ZP_07702719.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|315653429|ref|ZP_07906351.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|308165192|gb|EFO67430.1| anticodon binding domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308166412|gb|EFO68617.1| anticodon binding domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308167960|gb|EFO70093.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|315489354|gb|EFU78994.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 106

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 8/106 (7%)

Query: 340 WPDSVAPFKISLI--NIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           WP  VAPF+I +I  N+K  +Q V     E+I++       DV +DD  E+ G +F  AD
Sbjct: 5   WPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSD----KYDVLYDDRNERPGVKFNDAD 60

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           L+G P+++IVG + VS+  VE+K        +MSL+ +  Y S   
Sbjct: 61  LIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKEL 105


>gi|297579610|ref|ZP_06941537.1| threonyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297535256|gb|EFH74090.1| threonyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 642

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   MD P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMDIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAIVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|317131189|ref|YP_004090503.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469168|gb|ADU25772.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 160/432 (37%), Gaps = 58/432 (13%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIR 58
           P+ AE+ +H  ML       H+K                G+   LP G + L  +   + 
Sbjct: 224 PKKAELDAHITMLEEARKRDHNKLGRELGFFTTVDYIGQGLPVMLPKGSRVLQLLQRFVE 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTD 116
           +E+ + G +    P L  +DL+  SG +D Y   M  L D  ++D+     P        
Sbjct: 284 DEEEKRGYLLTKTPLLAKSDLYKISGHWDHYRDGMFVLGDEEKDDEVFALRPMTCPFQFQ 343

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++ +  +SYR+LP    +    FR+E      G++R R+F + + +     P+  +  + 
Sbjct: 344 VYLNKKRSYRDLPMRLGETSTLFRNEASGEMHGLIRVRQFTISEGH-IACRPDQLEEEFK 402

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   +   +GL              D+S+ F    +    +   + +  +      
Sbjct: 403 GCVDLANFMLKTVGLDE------------DVSYRFSKWDENDRDKYIGTSEQWEEVQDRM 450

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DSLPENKRVSARGIEVGHIFYFGT 292
               DD+    +      A Y    D+    +F   D+L          I V   F    
Sbjct: 451 RNILDDLGIQYTEASGEAAFYGPKLDIQIRNVFGKEDTL----------ITVQIDFQLAK 500

Query: 293 KYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++ +  + T    DG++ Y   +    IG      A++   + G    W   +AP ++ +
Sbjct: 501 RFEMKYTDT----DGQEKYPYVIHRTSIGCYERTLALLIEKYAGAMPTW---LAPEQVRV 553

Query: 352 INI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           + I + H+   +   EK+ A     G     D   E+IG +   A L   P  ++ G + 
Sbjct: 554 LPISEKHEAYAQPVLEKLRA----AGLRATVDQRNEKIGYRIREAQLEKVPYMLVAGDRE 609

Query: 411 VSDSKVEIKHRL 422
             +  V ++ R+
Sbjct: 610 AEEGTVSVRARV 621


>gi|260219598|emb|CBA26443.1| Threonyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 665

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 147/384 (38%), Gaps = 46/384 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R+     G +E+  P +    LW ++G +D Y +
Sbjct: 284 IDEHSPGTVFWHPKGWTLWQGVEQYMRKVYQDNGYLEVKGPQIIDKSLWEKTGHWDKYRE 343

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M    +++ D A+   P +      I++  IKSYR+LP  F +     R+E      G+
Sbjct: 344 NMFTTESEKRDYAL--KPMNCPGHILIYKQGIKSYRDLPLRFGEFGQCHRNEPSGGLHGI 401

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSH 208
           MR R F   D + F    E       K F + L +++   G  +I  +  + P     + 
Sbjct: 402 MRVRAFTQDDGHIF--CTEDQIQDEVKAFTTLLQKVYKDFGFTNIIYKLSTRPEKRIGTE 459

Query: 209 EFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           E    A+    +   +    DF  +P E   +   I   ++ +    P+   +     ++
Sbjct: 460 EGWDRAENALAEGLRASG-CDFEYLPGEGAFYGPKIEY-TLKDALGRPWQCGTI----QV 513

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVV 325
             +LPE                        + A F G DG  H  V +    +G++ R +
Sbjct: 514 DPNLPER-----------------------LDAEFVGEDGSRHRPVMLHRAIVGSLERFI 550

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE S        P  +AP +++++NI        D    +   L   G  V  D   
Sbjct: 551 GILIEESAGA----LPAWLAPVQVAVLNIT---DAQADYARSVAKTLQNQGLRVHLDLRN 603

Query: 386 EQIGSQFAVADLLGFPLQVIVGSK 409
           E+I  +     +   P  V++G K
Sbjct: 604 EKITYKIREHSMQKLPYLVVIGDK 627


>gi|186685902|ref|YP_001869098.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|186468354|gb|ACC84155.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 611

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 8/166 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M  L 
Sbjct: 225 GLPLWTPKGTLLRSTLEDFLKQEQVKRGYLSVVTPHIARVDLFKTSGHWQKYKEDMFPLM 284

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
                A   ++  +  P +      I++S ++SYR LP    +    +R E      G+ 
Sbjct: 285 ADDEEAAAQEQGFVMKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGELGGLT 344

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F + D++ F +TPE     +  +    L +F++L LK+   R
Sbjct: 345 RVRGFTVDDSHLF-VTPEQLDSEFLSVVDLILSVFNKLQLKNFKAR 389



 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 66/146 (45%), Gaps = 9/146 (6%)

Query: 294 YSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           Y+LP      +   DG +   V +     G++  +  ++   + G   +W   +AP +  
Sbjct: 460 YNLPERFELEYVAEDGVRKRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPVQAR 516

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           L+ +        D  + + A++  +G     D  G+++G Q   A+    P+  +VG+K 
Sbjct: 517 LLPV---GDTQLDFAKDVVAKMRALGIRAEVDTSGDRLGKQIRNAEKEKIPVMAVVGAKE 573

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVIN 436
           V  + + I+ R +G    + ++EV++
Sbjct: 574 VETNTLSIRTRASGELGVIPVDEVVD 599


>gi|262394487|ref|YP_003286341.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338081|gb|ACY51876.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 642

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 159/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + +  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTESQIQEEVTNCIKMVY-DTYQTFGFDNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + MD P                I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQSLESMDIPY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  L+NI           ++I  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVLMNITDKQS---GYVQEIVQKLQKSGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|220928798|ref|YP_002505707.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999126|gb|ACL75727.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 645

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/436 (19%), Positives = 168/436 (38%), Gaps = 33/436 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +Y   + +   RD      +L L T  + +  +G+   +P G + +  +   + +E+ R
Sbjct: 229 EEYVTKLEEAKKRDHNKLGRELELFT-TVEEIGQGLPLLMPKGARIVQTLQRFVEDEEER 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSH 121
            G +    P +  +DL+  SG +  Y   M  L D  ++++ M   P        I+ + 
Sbjct: 288 RGYVLTKTPLMAKSDLYKLSGHWQHYKDGMFLLGDEEKDEEVMALRPMTCPFQFMIYNTK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +   
Sbjct: 348 LHSYRDLPIRYGETSTLFRNEASGEMHGLIRVRQFTISEGH-LVCTPEQLEDEFKGV--- 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                    +  I    E+  I  D+++ F       + +   +++  +       T  D
Sbjct: 404 ---------VDLIKFMMETLGIQDDVTYRFSKWDPKNKEKYIGNEEDWENVQDQMRTILD 454

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +       E   A Y    D+  + +       K  +   ++V     F     L M  
Sbjct: 455 HLKIDYKEAEGEAAFYGPKLDIQCKNV-----HGKEDTIITVQVD----FALAERLNMVY 505

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             K  + K  Y+ +    IG      A++   + G    W   V    + L++ K H   
Sbjct: 506 VDKNNEKKHPYI-IHRTSIGCYERTLAILIEKYAGAFPTWLCPVQAKILPLVD-KHH--- 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L   G  V  D   E+IG +   A +   P  +++G K + ++ V ++ 
Sbjct: 561 --DFAQKVAQMLRDKGVKVEVDTRNEKIGYKIREAQMEKIPYMLVIGDKEMENNAVSVRS 618

Query: 421 RLTGIREDMSLEEVIN 436
           R  G    M  E+ ++
Sbjct: 619 RKDGDLGAMPAEQFVD 634


>gi|134295547|ref|YP_001119282.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166223329|sp|A4JDU4|SYT_BURVG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134138704|gb|ABO54447.1| Ser-tRNA(Thr) hydrolase [Burkholderia vietnamiensis G4]
          Length = 635

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++N + +S   ++   G + I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEDQFIAESIAFNTLAMS---VYKDFGFEHIDIKLSLRPEQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWDRAEQGLRDALTACGLTWQELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G   +W   +APF+  ++NI A  Q   +  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPVW---LAPFQAIVLNI-AESQA--EYAQSLAQTLQKQGVRVAADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|325661884|ref|ZP_08150505.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471862|gb|EGC75079.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 643

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 174/447 (38%), Gaps = 51/447 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L T  I +   G   +LP G    + +    RE   R 
Sbjct: 229 EYLAKIEEAKKRDHRKLGKELGLFT--ILEEGPGFPIFLPKGMILKNTLIDYWREVHTRA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           G +E+S P + +  LW  SG +  Y + M   + D  D A+   P +      ++++   
Sbjct: 287 GYVEISTPIMLNRQLWETSGHWAHYKENMYTTVIDEEDFAI--KPMNCPGGILVYKTEPH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++    R E      G+MR R F   DA+ F +T E  K     +     
Sbjct: 345 SYRDLPLRMGELGTVHRHEKSGALHGLMRVRSFTQDDAHIF-MTREQIKDEIKGVARLID 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K                  + V   T       S++  D    +  +  D++
Sbjct: 404 EVYSLFGFK------------------YHVELSTKPEDSMGSQEDWDIATDALRSALDEL 445

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SA 300
                I E   A Y    D H E   D+L        R  + G I      + LP+    
Sbjct: 446 QLPYVINEGDGAFYGPKIDFHLE---DTL-------GRTWQCGTI---QLDFQLPLRFEM 492

Query: 301 TFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
            +  ADG+ H  + +     G++ R +  +IE         +P  +AP ++ ++ I + +
Sbjct: 493 EYIAADGEKHRPIMVHRVVFGSIERFIGILIEHFAGA----FPTWLAPEQVKVLPISEKY 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   K+  + +K+ C V  D+  E+IG +   A L   P  ++VG+K   +  V 
Sbjct: 549 HEYANEVAAKL--KEAKIRCSV--DERSEKIGYKIRDARLNKIPYMLVVGAKEQEEGVVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R  G     SL+  I   +    N
Sbjct: 605 VRSRFLGDEGQRSLDTFIAEITEEIKN 631


>gi|315171869|gb|EFU15886.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1342]
          Length = 660

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|25013040|gb|AAN71609.1| RH56418p [Drosophila melanogaster]
 gi|220950596|gb|ACL87841.1| Aats-thr-PB [synthetic construct]
          Length = 711

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 169/409 (41%), Gaps = 44/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + +   I+ E  + G  E+  P + +A LW+ SG +  Y +
Sbjct: 325 FHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAE 384

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ 
Sbjct: 385 NMFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLT 443

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F   PE  K S  K  + +L+  + +   S  +   + P      +  
Sbjct: 444 RVRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKYVYTIFGFSFQLVLSTRP-----DNYL 496

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             L    + +   ++   +F +P +    D             A Y    D+    + D+
Sbjct: 497 GELEQWNDAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDA 541

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVI 329
           L    + +   ++    F    +++L    ++   DG K   V +    +G++  + A++
Sbjct: 542 LKRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAIL 593

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIY--ARLSKVGCDVFWDDMGE 386
             +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++    +S+  CD      G+
Sbjct: 594 TENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDA-----GD 645

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I
Sbjct: 646 TMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELI 694


>gi|308173840|ref|YP_003920545.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307606704|emb|CBI43075.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 642

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 16  RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++AE  +H+ +   L+  M  + + G+  +LP GQ   + + + +R +Q+     E+  P
Sbjct: 238 KEAEKRNHRKLGAELQLFMFSEEAPGMPFYLPNGQFIRNTLESFLRSKQDAYHYQEVRTP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW +SG +D Y KE +  ++ + +     P +      IF+  ++SYR LP   
Sbjct: 298 MMMNQRLWEQSGHWDHY-KENMYFSEADQQRFALKPMNCPGHMLIFKERLRSYRELPIRM 356

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
            +     R E      G++R R F   DA+ F +TPE
Sbjct: 357 AEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-VTPE 392


>gi|299537091|ref|ZP_07050394.1| prolyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727332|gb|EFI67904.1| prolyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 478

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + + ++ G   Y GTK++   +  +     +  YV   S+G  + R++ +VI    D +G
Sbjct: 214 NGKAVQAGTSHYLGTKFAEAFNIKYLNKANQHEYVHTTSWGT-STRLIGSVIMVHGDEQG 272

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           ++ P  +AP ++ LI +   K + Q+  +  ++I+A L   G  V  DD  +  G +F  
Sbjct: 273 LVLPPRIAPTQVVLIPVGPWKKNPQIM-EHLDEIFAALKAKGIRVRLDDSDQSPGYKFNE 331

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +L G P++V +G + + + +  +K R    +  + L  +I 
Sbjct: 332 WELKGVPVRVELGPRDLENKQALLKARDEEEKRTVELASIIT 373


>gi|21428938|gb|AAM50188.1| GH20022p [Drosophila melanogaster]
          Length = 747

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 169/409 (41%), Gaps = 44/409 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   I+ E  + G  E+  P + +A LW+ SG +  Y + 
Sbjct: 362 HELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAEN 421

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ R
Sbjct: 422 MFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTR 480

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F   PE  K S  K  + +L+  + +   S  +   + P      +   
Sbjct: 481 VRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKYVYTIFGFSFQLVLSTRP-----DNYLG 533

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L    + +   ++   +F +P +    D             A Y    D+    + D+L
Sbjct: 534 ELEQWNDAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDAL 578

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIE 330
               + +   ++    F    +++L    ++   DG K   V +    +G++  + A++ 
Sbjct: 579 KRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAILT 630

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIY--ARLSKVGCDVFWDDMGEQ 387
            +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++    +S+  CD      G+ 
Sbjct: 631 ENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDA-----GDT 682

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I 
Sbjct: 683 MNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELIT 731


>gi|27468275|ref|NP_764912.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis ATCC 12228]
 gi|293366369|ref|ZP_06613048.1| threonine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38258358|sp|Q8CS74|SYT_STAES RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27315821|gb|AAO04956.1|AE016748_190 threonyl-tRNA synthetase 1 [Staphylococcus epidermidis ATCC 12228]
 gi|291319494|gb|EFE59861.1| threonine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733742|gb|EGG70068.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737259|gb|EGG73513.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 645

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 167/407 (41%), Gaps = 45/407 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M   +
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAM 321

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
               D+AM+  P +      I+++   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDEDEAMVLRPMNCPHHMMIYKNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++      ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIQDVYKDFGFEDYRFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP 272
             +   +   D M     S   +  D + L    +I E   A Y    DV   ++  ++ 
Sbjct: 427 PEDKHKYFDDDEMWEKAESMLKEASDELGLTYEEAIGE--AAFYGPKLDV---QVKTAMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E
Sbjct: 482 KEETLSTAQLD----FLLPERFDL----TYIGQDGEQHRPVVIHRGVVSTMERFVAFLTE 533

Query: 331 SSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   KG  +P  +AP ++ +I  NI  H     D    +   L   G  V  DD  E++
Sbjct: 534 ET---KG-AFPTWLAPMQVEIIPVNIDLH----YDYARLLQDELKSQGVRVEIDDRNEKM 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A +   P Q++VG + V   +V ++   +  +E +  +E I
Sbjct: 586 GYKIREAQMKKIPYQIVVGDQEVEHQEVNVRKYGSEKQESVEKDEFI 632


>gi|283470950|emb|CAQ50161.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 645

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  NI  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNIDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|255731874|ref|XP_002550861.1| hypothetical protein CTRG_05159 [Candida tropicalis MYA-3404]
 gi|240131870|gb|EER31429.1| hypothetical protein CTRG_05159 [Candida tropicalis MYA-3404]
          Length = 684

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 138/346 (39%), Gaps = 72/346 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 280 DEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 339

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT + +     ++   Y  ++  L   ++P                +V     E +
Sbjct: 340 HTAHLTQDAAAEEVLQILDYYAGVYEEL--LAVP----------------VVKGKKTENE 381

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   D+                   + VE + A                       + R
Sbjct: 382 KFAGGDY------------------TTTVEGFIA----------------------ATGR 401

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKG 337
           GI+ G   + GT +S   + + +  +G +    +    S+G+ + RV+  +I +  D KG
Sbjct: 402 GIQGGTSHHLGTNFSKMFNLSVESPEGPEKPRIFAYQNSWGL-STRVIGVMIMTHSDNKG 460

Query: 338 IIWPDSVAPFKISLINI----KAHDQVCRD---ACEKIYARLSKVGCDVFWDDMGE--QI 388
           ++ P  +A ++  +I +    K+ D   +D     +KI   L   G      D  E    
Sbjct: 461 LVLPPRIAQYQAVVIPVGLTSKSSDAQRKDINEGAQKIEKTLQDAGIRAT-GDYREIYNP 519

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +FA  +L G PL++  G K ++ ++V +  R  G +  + L+E+
Sbjct: 520 GWKFADWELKGVPLRLEFGPKDLAGNQVTVVRRNDGKKYTVKLDEL 565


>gi|255714212|ref|XP_002553388.1| KLTH0D15620p [Lachancea thermotolerans]
 gi|238934768|emb|CAR22950.1| KLTH0D15620p [Lachancea thermotolerans]
          Length = 453

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/450 (20%), Positives = 169/450 (37%), Gaps = 89/450 (19%)

Query: 36  SKGIYSWLPLGQKALDN-VNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  +  VN +  ++QN+ G  E+  P +    LW +SG +++Y ++M 
Sbjct: 50  SPGSVFFLPNGTKIFNKLVNFMKLQQQNKFGFQEVITPLIYRKSLWEQSGHWENYKEDMF 109

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           R+  ++ +   YG  P +      +F+   +SY  LP  +       R+E      G+ R
Sbjct: 110 RVEGQDLQKEEYGLKPMNCPGHCMVFKRFARSYNELPLRYSDFSPLHRNEASGALSGLTR 169

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F   D + F                             IP + ES         + I
Sbjct: 170 VRKFHQDDGHIF----------------------------CIPEQVESEIT------KCI 195

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D   T+V        FP+   NT  D  + L++  E +    +  +  H E + + +
Sbjct: 196 KMLDLCYTKV--------FPLGRGNTPTDYELRLSTRPEHYVGDVSVWN--HAEAILEGI 245

Query: 272 PENKRVSARGIEVGHIFYFGTK---------------------YSLPMSATFKGADGKDH 310
             NK      I  G   ++G K                     + LP     K  D  + 
Sbjct: 246 -LNKSGKVWSINAGDGAFYGPKIDVLLADHNNKQHQVATIQLDFQLPERFDLKYKDKDNT 304

Query: 311 Y---VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC------ 361
           +   + +     G++    A++  S++GK   WP  + P +  ++ +   ++        
Sbjct: 305 FKRPIMIHRAVFGSVERFMAMLIDSNEGK---WPFWLNPHQCMIVPLNTKNEALVHKAND 361

Query: 362 -------RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D       +L+    +V  DD  E  G +   A    +   ++VG+K +   
Sbjct: 362 LARALRGEDTPADEPVKLNSFHFNVDIDDRAEPTGYRIKEAIEKNYSFLIMVGTKEIESG 421

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           K  I+ R +   E ++L+E+I   S+  SN
Sbjct: 422 KYAIRTRESRDLEHLTLDEIIQKFSNLESN 451


>gi|227519418|ref|ZP_03949467.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|307280591|ref|ZP_07561639.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|227073125|gb|EEI11088.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|306503957|gb|EFM73174.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|315145737|gb|EFT89753.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315151718|gb|EFT95734.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315173904|gb|EFU17921.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 660

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|189466356|ref|ZP_03015141.1| hypothetical protein BACINT_02731 [Bacteroides intestinalis DSM
           17393]
 gi|189434620|gb|EDV03605.1| hypothetical protein BACINT_02731 [Bacteroides intestinalis DSM
           17393]
          Length = 646

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 157/428 (36%), Gaps = 67/428 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  + 
Sbjct: 261 KGLPMWLPKGTALRLRLQEFLRRIQARYDYQEVITPPIGNKLLYITSGHYAKYGKDSFQP 320

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      I+++  +SY++LP    +     R E      G+ R R
Sbjct: 321 IHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  + ++      +F  +   ++  +              I L
Sbjct: 381 SFTQDDAHIF-CRPDQVKDEFLRVMDIISIVFRSMEFANVEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK   +  E
Sbjct: 426 RDKVNREKYIGSD-----------------------ENWERAEQAIIEACEEKGLTARIE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + GAD + H  V +     
Sbjct: 463 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFDLEYTGADNQKHRPVMIHRAPF 522

Query: 320 GAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G+M R VA +IE +  GK  +W  P+ VA   IS        +   D  +++   L +  
Sbjct: 523 GSMERFVAVLIEHTA-GKFPLWLTPEQVAILPIS--------EKFNDYAQEVKKFLKQYD 573

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D+  E+IG +    +L   P  +IVG K   + +V ++ +  G +  M  EE   
Sbjct: 574 IRAIVDERNEKIGRKIRDNELKRIPYMLIVGEKEAENREVSVRKQGEGDKGTMKFEEFAK 633

Query: 437 YASHRFSN 444
             +    N
Sbjct: 634 ILNEEVQN 641


>gi|76801546|ref|YP_326554.1| prolyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|114152219|sp|Q3IS99|SYP_NATPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76557411|emb|CAI48989.1| proline--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 482

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 138/365 (37%), Gaps = 78/365 (21%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           WV  G +D   +   RLA R        PT E ++T      ++SYR+LP    Q     
Sbjct: 95  WVTHGGHDELEE---RLAVR--------PTSESIITPFIAEWVRSYRDLPLRVNQWCSVV 143

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E        R++EFL ++ ++   T E +          Y R++  +   +IP     
Sbjct: 144 RWEATETKPFFRTKEFLWQEGHTAHATEESAWDETMTRLEQYERLYEEV--MAIP----- 196

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G  G    H+    ADT  T                      I +L              
Sbjct: 197 GMTGRKPEHDKFPGADTTTT----------------------IEAL-------------- 220

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      +P+ K V A     G   Y GT ++      +   D         S+G+
Sbjct: 221 -----------MPDGKSVQA-----GTSHYLGTSFAEAFDIEYTDEDETKQTAHTTSWGL 264

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGC 377
            + R + A+I +  D +G++ P ++AP ++ ++ I   D  +  ++    + A L +   
Sbjct: 265 -SWRALGALIMTHSDDQGLVIPPALAPTQVVVVPIWQADTEEAVKEYAADLAAELDE-QF 322

Query: 378 DVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG---IREDMSLEE 433
            V  DD  E+  G +F   +L G PL++ +G   V D    + HR  G   + E  S+ +
Sbjct: 323 RVELDDRDERNPGFKFNEHELQGVPLRIEIGPNEVEDEAATLVHRPDGESDVAERESITD 382

Query: 434 VINYA 438
            ++ A
Sbjct: 383 AVDEA 387


>gi|24583839|ref|NP_723725.1| Threonyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|22946307|gb|AAF53166.2| Threonyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|211938559|gb|ACJ13176.1| FI05224p [Drosophila melanogaster]
          Length = 747

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 169/409 (41%), Gaps = 44/409 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   I+ E  + G  E+  P + +A LW+ SG +  Y + 
Sbjct: 362 HELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAEN 421

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ R
Sbjct: 422 MFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTR 480

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F   PE  K S  K  + +L+  + +   S  +   + P      +   
Sbjct: 481 VRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKYVYTIFGFSFQLVLSTRP-----DNYLG 533

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L    + +   ++   +F +P +    D             A Y    D+    + D+L
Sbjct: 534 ELEQWNDAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDAL 578

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIE 330
               + +   ++    F    +++L    ++   DG K   V +    +G++  + A++ 
Sbjct: 579 KRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAILT 630

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIY--ARLSKVGCDVFWDDMGEQ 387
            +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++    +S+  CD      G+ 
Sbjct: 631 ENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDA-----GDT 682

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I 
Sbjct: 683 MNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELIT 731


>gi|85711636|ref|ZP_01042693.1| threonyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85694496|gb|EAQ32437.1| threonyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 638

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 149/397 (37%), Gaps = 50/397 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +RE+       E+  P +    LW +SG ++ +   
Sbjct: 257 QEEAPGMVFWHHNGWTIFRELEDFVREKLREYQYQEVKGPMMMDRVLWEKSGHWEKFSDL 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTSSENREYAV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   DA+ F  T +  +             +   G   I ++  + P   +G D + 
Sbjct: 376 VRGFTQDDAHVF-CTEDQVQDEVAACIKMVYETYETFGFDKIDVKLSTRPEKRLGDDATW 434

Query: 209 EFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +    ++        + D +DF  +P E   +   I                       L
Sbjct: 435 D---RSEKALADALKAHD-IDFTYLPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           FD L        R  + G I      ++LP  ++AT+ G D   H   M    I G++  
Sbjct: 471 FDCL-------GRAWQCGTI---QLDFALPGRLNATYVGEDNDRHTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G   +W   +AP ++ L+NI  +    RD   K+   L++ G     D  
Sbjct: 521 FMGILIEEYAGNFPLW---LAPTQVVLMNITDNQ---RDYVNKVVKSLNEKGIRASADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG K V   +V ++ R
Sbjct: 575 NEKIGFKIREHTLKRVPYLLVVGDKEVEAGEVAVRTR 611


>gi|110597728|ref|ZP_01386012.1| prolyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340635|gb|EAT59115.1| prolyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 481

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 132/330 (40%), Gaps = 63/330 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TP
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATP 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E S+    +M   Y           + M  ++       S +F      G  + +C    
Sbjct: 167 EESQEEVMRMINVYKTFAEEYMAMPVIMGKKTD------SEKF-----AGAVETYC---- 211

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                            + ++++   A  A TS  HN                       
Sbjct: 212 -----------------IEAMMQDTKALQAGTS--HN----------------------- 229

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G  ++      F+  +    YV   S+G+ + R++ A+I +  D +G++ P  +A  
Sbjct: 230 --LGQNFAKAFDCQFQTKESTLDYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLATR 286

Query: 348 KISLINIKAHDQVCRDA-CEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVI 405
           ++ +I I   D+    A  E I   L K G   F D   +   G +FA  +L G P+++ 
Sbjct: 287 QVVIIPILRGDKAAVLAKAEAIADSLKKSGIPSFVDGSEQNSPGWKFAEYELQGIPIRIE 346

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G + + ++      R T  + +++L++ +
Sbjct: 347 LGPRDIENNICIAARRDTLEKTELALDDTL 376


>gi|14521178|ref|NP_126653.1| prolyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|74581662|sp|Q9V022|SYP_PYRAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|5458396|emb|CAB49884.1| proS prolyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 480

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 3/168 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   ++   +  ++  DG   YV   ++G+   R++AAVI    D +G+
Sbjct: 220 GRTLQIGTMHNYKQNFAKAYNILYEKEDGTHDYVHQTTFGMSE-RLLAAVIAIHGDDRGM 278

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P ++AP ++ ++ I  K   ++  +   +I   L   G  V  D   ++ G +F   +
Sbjct: 279 VLPPTIAPIQVVIVPIPKKEKQEIVYEYAREIEEELRTAGIRVHLDMREKRPGWKFYDWE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L G P+++ VG + V +S V +  R    +  +  EE+++     F +
Sbjct: 339 LKGVPVRIEVGPRDVENSTVVLARRDKLEKITIKREELVDKVRELFDD 386



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  WLP G K + N+   I EE  RTG  E+  P L    +   E+     +  E+  
Sbjct: 32  KGMNVWLPYGLKIMKNIEKFIHEEMERTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFW 91

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +I  PT E  M  +F   I+S+ +LPF  YQI   +R E +    ++R
Sbjct: 92  ITHAGHEPLDVKLILRPTSETAMYSMFALWIRSHADLPFKVYQIVNVYRYETKHTRPLIR 151

Query: 152 SRE 154
            RE
Sbjct: 152 VRE 154


>gi|312951108|ref|ZP_07770013.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310630884|gb|EFQ14167.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315154152|gb|EFT98168.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0031]
          Length = 660

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 50/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 277 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 336

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 337 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 396

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 397 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 441

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 442 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 498

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 499 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 550

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 551 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 603

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIREDMSL------EEVINYA 438
           +   +     P Q++VG K + D+ V ++    + T + ED+S+       EV NY+
Sbjct: 604 KIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKETSV-EDLSIFIDSMAAEVHNYS 659


>gi|293569265|ref|ZP_06680563.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587971|gb|EFF19821.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 646

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 155/389 (39%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 261 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPM 320

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 321 DMGDGEMLVLRPMNCPHHMMVYKNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 380

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 381 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 425

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 426 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTE 482

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 483 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 534

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  ++ AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 535 YKGAFPTW---LAPIQATIIPVSVDAHG----DYAYEIKERLQMKGLRVEVDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 588 KIRASQTQKIPYQLVVGDKELEDATVNVR 616


>gi|253581047|ref|ZP_04858308.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847710|gb|EES75679.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 479

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   + K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFARAFGIQYTDKENKLQYVHQTSWGM-TTRMIGAIIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +  +I I+   +   +  ++++A L   G  V  DD  +  G +FA  ++ 
Sbjct: 284 VLPPRIAPVQAVIIPIQQRKEGVLEKADEMFAALKAAGVRVKVDDTDKSPGFKFAEQEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P+++  G K + + +  I  R T  +  ++ +E++ 
Sbjct: 344 GIPIRIECGPKDIENGQAVICRRDTREKYTVTFDELVE 381


>gi|170732802|ref|YP_001764749.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|238688618|sp|B1K091|SYT_BURCC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169816044|gb|ACA90627.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 635

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H +V    F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGHVQV----FKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHS--YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +    S  +N + +S   ++   G   I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEDQFISESIAFNTLAMS---VYKDFGFDHIDIKLSLRPDQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWARAEQGLRDALTACGLTWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G   +W   +AP++  ++NI A  Q   +  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPVW---LAPYQAIVLNI-AESQA--EYAQSLTQTLQKQGVRVAADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|260775804|ref|ZP_05884700.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608220|gb|EEX34389.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 392

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G+  W P G +    V A IR  Q R G  E+  P L +  +W  SG  + YG+
Sbjct: 17  ISESVSGMVDWYPKGHELYRKVQAYIRSVQKRYGYHEVRSPVLANHSVWTTSGHNEKYGE 76

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + + N   +   P        +F   + SYR LP+   +  L  R+E      G+ 
Sbjct: 77  NMFHVPEHN---LSVKPMSCPFHISMFNELVSSYRELPYRIAEFGLCHRNESSGSLNGLF 133

Query: 151 RSREFLMKDAYSF 163
           R R F   D + F
Sbjct: 134 RLRAFNQDDGHIF 146


>gi|227529941|ref|ZP_03959990.1| threonine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350126|gb|EEJ40417.1| threonine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 601

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 161/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I + +   G   +  P L + D +  SG ++ Y  +M    
Sbjct: 217 GLPYWMPKGATIRRTIERYIIDREVADGYKHVYTPVLMNLDAYKTSGHWEHYRDDMFPPM 276

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 277 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRIAELGMMHRYEKSGALSGLQRVREM 336

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +T +  +  + K+    + ++    +     R              + L D
Sbjct: 337 TLNDGHTF-VTLDQIRSEFAKILRLIMDVYKDFDITDYSFR--------------LSLRD 381

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
               + + + D M     S      D ++L+    E   A Y    D+  +    +L  +
Sbjct: 382 PKNVKKYYANDEMWEKSQSMLKKAMDDLNLDYYEAEGEAAFYGPKLDIQTKT---ALGND 438

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DGK+H   M   G +G M    A +   +
Sbjct: 439 ETMSTIQLD----FMLPERFGL----TYVGQDGKEHQPVMIHRGVVGTMERFIAYLTEIY 490

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N  AH +   +  +K+ A        V  D   E++G +
Sbjct: 491 KGAFPTW---LAPEQVHIIPVNEDAHGEYADELAKKMKA----ANIRVVVDHRNEKMGYK 543

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  ++VG    +++ V ++      + +MS +  +N
Sbjct: 544 IRESQTQKVPYTLVVGDDEKANNGVSVRKYGEKEQNEMSQDAFMN 588


>gi|237844903|ref|XP_002371749.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211969413|gb|EEB04609.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 844

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 64/150 (42%), Gaps = 5/150 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G K  + +   +REE    G  E+  P + S DLW  SG Y +Y KE + 
Sbjct: 414 SPGSCFWLPDGAKVYNKLCMFMREEYRFRGFQEVISPNIFSCDLWKVSGHYQNY-KENMY 472

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L D   K     P +      +F+    SYR LP       +  R+EL     G+ R R 
Sbjct: 473 LFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLPLRLADFGVLHRNELSGSLTGLTRVRR 532

Query: 155 FLMKDAYSF---DLTPEGSKHSYNKMFVSY 181
           F   DA+ F   D   E    + N +F  Y
Sbjct: 533 FQQDDAHIFCRLDQVKEEVADALNFLFFVY 562


>gi|46580942|ref|YP_011750.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601757|ref|YP_966157.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|81566250|sp|Q728R5|SYT_DESVH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987320|sp|A1VBB4|SYT_DESVV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46450362|gb|AAS97010.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561986|gb|ABM27730.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Desulfovibrio
           vulgaris DP4]
 gi|311234632|gb|ADP87486.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 644

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 158/408 (38%), Gaps = 49/408 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R+E  +     +  P L   +LW +SG YD+Y +E + 
Sbjct: 259 APGMVFWHPKGMLVRTIIEDFLRKEHLKRRYDIVQGPQLLRRELWEKSGHYDNY-RENMY 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             + ++ A    P +      I+RS I+SYR+LP  F+++ +  R E      G++R R+
Sbjct: 318 FTEIDENAYGVKPMNCLAHMLIYRSAIRSYRDLPKRFFELGVVHRHEKSGVLHGLLRVRQ 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFI 211
           F   DA+     P+  +     +      + +  G     ++  R E   IG D + E  
Sbjct: 378 FTQDDAHII-CRPDQLEDEIIDVIALVRDLMNLFGFDYKVAVSTRPEKS-IGSDEAWELA 435

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A          K      IP             +I E   A Y    DV   +L D +
Sbjct: 436 TNA--------LVKAVERAGIPY------------TINEGDGAFYGPKIDV---RLMDCI 472

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAV 328
               + S               ++LP      + G DG+ H   M    I G++     V
Sbjct: 473 GREWQCST----------IQCDFTLPERFDLVYVGQDGERHRPVMVHRAILGSLERFIGV 522

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G    +P  +AP +  L+ +        +  E   A L+K G  V  D   E++
Sbjct: 523 LIEQYAGA---FPAWLAPVQARLLTVTDAQN---EFVESARAALAKAGIRVEADVRNEKL 576

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G +   A L   P  ++VG K V    V ++ R        SL+EV++
Sbjct: 577 GYKVREAQLEKIPYILVVGDKEVEAGGVNVRLRTGENLGLKSLDEVVS 624


>gi|312134685|ref|YP_004002023.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774736|gb|ADQ04223.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 639

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 161/415 (38%), Gaps = 45/415 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I     G   +LP G    + +    REE  + G  E+  P + + +LW++SG +D Y K
Sbjct: 258 IFDEGPGFPFFLPKGMIIRNILEDFWREEHKKRGYQEIKTPIMLTKELWIQSGHWDHY-K 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D+     P +      +++    SYR LP    ++ L  R EL     G+M
Sbjct: 317 ENMYFTKIDDQEFAIKPMNCPGGILVYKRKSHSYRELPQRLCELGLVHRHELSGVLHGLM 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F + P   K     +       ++  G K    +  R E+  +G D  
Sbjct: 377 RVRCFTQDDAHIF-MLPSQIKDEIKGVIDLIDYFYNVFGFKYHVELSTRPENS-MGTD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   +A++   +                   ++I     I E   A Y    D H E  
Sbjct: 433 -EQWNMAESALKEA-----------------LEEIGISYKINEGDGAFYGPKIDFHLE-- 472

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            DSL    + +   ++    F    ++ L     + G DG  H  V +     G++    
Sbjct: 473 -DSLKRTWQCATIQLD----FQMPERFDL----YYIGEDGAKHRPVMLHRVVFGSIERFI 523

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++     G   +W   +AP ++ +I +  +     +   K+   L + G  V  D   E
Sbjct: 524 AILTEHFGGAFPVW---LAPTQVRVIPVSDN---FNNYAAKVSQILKENGFRVEEDYRSE 577

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +G +   A L   P  VIVG K   ++ V ++ R  G     +++E ++    +
Sbjct: 578 TVGYKIRDAQLQKIPYMVIVGEKEQKENTVAVRDRKKGDLGSFTIDEFVSMMKEK 632


>gi|307730402|ref|YP_003907626.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307584937|gb|ADN58335.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 635

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 164/424 (38%), Gaps = 53/424 (12%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H      +F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGH----VQVFNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS--YNKM 177
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S  +N +
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEEQFISESIAFNTL 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +S   ++   G  ++ ++    P     + E    A+ G  +   +       +P E  
Sbjct: 403 AMS---VYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEG- 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                           A Y    + H   + D+L  + +     +++      G +Y   
Sbjct: 459 ----------------AFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLGAEY--- 496

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   +G+   + +    +G+M     ++   H G    W   +AP ++ ++NI A 
Sbjct: 497 ----VAEDNGRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNI-AE 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +Q   +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V 
Sbjct: 549 NQA--EYAQSLAQSLQKQGVRVEADLRNEKISYKIRQHTLEKVPYLLVVGDKEREAQTVA 606

Query: 418 IKHR 421
           ++ R
Sbjct: 607 VRAR 610


>gi|222479210|ref|YP_002565447.1| prolyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|259511600|sp|B9LUM0|SYP_HALLT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222452112|gb|ACM56377.1| prolyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 491

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 119/321 (37%), Gaps = 65/321 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++T      ++S+R+LP    Q     R E        R++EFL ++ ++   T 
Sbjct: 116 PTSESIITPYISQWVRSHRDLPLRVNQWCSVVRWEATETKPFFRTKEFLWQEGHTAHATH 175

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           EG+          Y  ++    L ++P+     P                        D 
Sbjct: 176 EGAWEETMTRLDQYASVYED--LLAMPVLKGQKP------------------------DH 209

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             FP     T  + +                            +P+ K V A     G  
Sbjct: 210 DKFPGAETTTTVEAL----------------------------MPDGKSVQA-----GTS 236

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     TF   D ++      S+G+ + R + A+I +  D +G++ P  VAP 
Sbjct: 237 HHLGQSFAEAFDITFSDEDEEERIAHTTSWGL-SWRALGALIMTHSDEQGLVLPPGVAPE 295

Query: 348 KISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++ ++ I      D+V   A E +   L   G  V  DD  G   G +F   +L G PL+
Sbjct: 296 QVVVVPIWQEDTKDEVLEYA-EGVADDLDDAGIRVELDDRDGRNPGFKFNEHELNGVPLR 354

Query: 404 VIVGSKFVSDSKVEIKHRLTG 424
           + +G   V D ++ + HR  G
Sbjct: 355 IEIGPHEVEDGELTLVHRPDG 375


>gi|331007295|ref|ZP_08330496.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418902|gb|EGG93367.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 640

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/414 (20%), Positives = 155/414 (37%), Gaps = 47/414 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+ Q   G  E+  P +    LW  SG +D +  
Sbjct: 256 MQEEAPGMVFWHPKGWSIYATIEEYMRKVQRDNGYKEIKTPQVVDRSLWERSGHWDKFRD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +   +    I  P +      +F   +KSY+ LP    +     R+E      G+M
Sbjct: 316 NMFTVESESRDYAI-KPMNCPCHVQVFNQGLKSYKELPLRLAEFGSCHRNEASGTLQGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSHE 209
           R R F+  DA+ F    E +      +F   L +++   G   + +R  + P     + E
Sbjct: 375 RVRGFVQDDAHIF--CSEEAIQEEVSVFTDLLYKVYADFGFSDVIIRLSTRPEQRVGTEE 432

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+        +K      +P E   +   I  +                    L D
Sbjct: 433 GWDKAEKALADALDAKGLPWEELPGEGAFYGPKIEFS--------------------LRD 472

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVA 326
            L  N+      I+V         +S+P  + A +   DG      M    I G+     
Sbjct: 473 CL--NRVWQCGTIQV--------DFSMPGRLDAQYVAEDGSRQVPVMLHRAILGSFERFI 522

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   ++G    W   +AP +++++NI  +     +  +K    L   G  V  D   E
Sbjct: 523 GILIEHYEGAFPTW---LAPEQVAILNITDNQS---EYVQKTEKALRDKGFRVISDLRNE 576

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +IG +     L   P  +++G K V ++ + ++ R TG  ED+ +  +  + +H
Sbjct: 577 KIGFKIREHTLQRIPYLLVIGDKEVENNALAVRTR-TG--EDLGVMSIDAFVAH 627


>gi|255534998|ref|YP_003095369.1| threonyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341194|gb|ACU07307.1| Threonyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 639

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 157/418 (37%), Gaps = 63/418 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      +   + E Q + G   +  P + + +L+V SG +D YG +    +
Sbjct: 260 GLPLWLPKGAALRKKLENFLSEAQKKAGYEFVMTPHIGAKELYVTSGHWDKYGADSFQPI 319

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +  +  ++ M+  P +     +I++    SY++LP  F +    +R E      G+ R R
Sbjct: 320 KTPNEGEEFML-KPMNCPHHCEIYKVGQWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TP+     +  +    L +F  LG +    +              I L
Sbjct: 379 GFTQDDAHLF-CTPDQLLTEFENVIDLTLYVFKSLGFEDFVTQ--------------ISL 423

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A      +K   ++ E
Sbjct: 424 RDPENKEKYIGSD-----------------------ENWKKAENAIIQAAAKKGLKTVVE 460

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + G+D + H  V +     
Sbjct: 461 YGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFDLWYIGSDNEKHRPVMIHRAPF 520

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+M    A++  +  G   +W   +AP + +++ I    +   D  +K+   L       
Sbjct: 521 GSMERFIAILLENTAGDFPLW---LAPDQFTILPI---SEKYADYAKKVSELLENHDICG 574

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             DD  E+ G +   A++   P  ++VG     +  V ++ R  G    MS+E+ I Y
Sbjct: 575 LIDDRNEKTGRKIRDAEIKKLPFMLVVGETEELNGTVSVRRRGEGDLGTMSVEDFIAY 632


>gi|121591402|ref|ZP_01678683.1| threonyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121546739|gb|EAX56913.1| threonyl-tRNA synthetase [Vibrio cholerae 2740-80]
          Length = 642

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   MD P                + E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMDIPF--------------EVQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|294619108|ref|ZP_06698603.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291594769|gb|EFF26151.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 646

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 155/389 (39%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 260 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPM 319

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLVLRPMNCPHHMMVYKNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 425 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTE 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 482 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 533

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  ++ AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 534 YKGAFPTW---LAPIQATIIPVSVDAHG----DYAYEIKERLQMKGLRVEVDDRNEKMGY 586

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 587 KIRASQTQKIPYQLVVGDKELEDATVNVR 615


>gi|254171909|ref|ZP_04878585.1| prolyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033805|gb|EEB74631.1| prolyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 483

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 23  HKLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADL 79
           ++L+   G+I +    KG+  WLP G K + N+ A IR E  RTG  E+  P L    + 
Sbjct: 18  NELLETAGIIDKRYPVKGMNVWLPYGLKIMRNIEAFIRAEMERTGHEEVLFPALIPETEF 77

Query: 80  WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     +  E+  +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI
Sbjct: 78  QKEAEHIKGFEDEVYWVTHAGLDPLDVRLILRPTSETAMYSMFSLWIRSHADLPFKVYQI 137

Query: 136 QLKFRDELRPRFGVMRSRE 154
              +R E +    ++R RE
Sbjct: 138 VNVYRYETKHTRPLIRVRE 156



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 7/162 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   ++   +  ++   G   Y    ++G+   R++AAVI    D  G+
Sbjct: 222 GRTLQIGTMHNYKQNFAKAYNIQYETETGDHEYAHQTTFGMSE-RLLAAVIAVHGDDSGM 280

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P ++AP ++ ++ I   D          +I   L K G  V  D+   + G ++   +
Sbjct: 281 VLPPTIAPIQVVIVPIPKKDANVDVFAYAREIAEELRKAGFRVHVDERDIRPGRKYYDWE 340

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEV 434
           L G PL++ VG + V   K  +  R T     +  D  +EEV
Sbjct: 341 LKGVPLRIEVGPRDVEGRKAVLARRDTFEKVTVERDAIVEEV 382


>gi|332300493|ref|YP_004442414.1| threonyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177556|gb|AEE13246.1| threonyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 650

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 169/419 (40%), Gaps = 62/419 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G +    +   ++  Q R G  ++  P + + +L+  SG Y  YG +  ++
Sbjct: 264 QGLPLWLPRGTQLRLKLEDFLKRIQKRYGYQQVMTPHIGNVELYKTSGHYAKYGADSFQV 323

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               +  +A +  P +     +I+R    SYR+LP    +    +R E      G+ R R
Sbjct: 324 ITTPQEGEAFMLKPMNCPHHCEIYRLKPHSYRDLPVRLAEFGTVYRYEQSGELHGLTRVR 383

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS----IPMRAE---SGPIGGDL 206
            F   DA+ F   P+  K  + K+      IF  L  ++    I +R++   S  IG + 
Sbjct: 384 GFTQDDAHIF-CRPDQVKEEFLKVMDIIFIIFRALDFENFEAQISLRSQTDRSKYIGSEE 442

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +       D  E  +  +      P    + ++D+            A Y    D     
Sbjct: 443 NW------DRAEQAIIEACQEAGLPA---HVEYDE-----------AAFYGPKLDF---M 479

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM- 322
           + D+L        R  ++G I      Y+LP      + G D + H  V +     G+M 
Sbjct: 480 VKDAL-------GRRWQLGTI---QVDYNLPERFDLEYTGEDNQKHRPVMIHRAPFGSME 529

Query: 323 RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           R VA +IE +  GK  +W  PD V    +S        +   +   ++   LS+    V 
Sbjct: 530 RFVAVLIEHTA-GKFPLWLAPDQVVILPVS--------ERFNEYANEVAVALSEHDISVS 580

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD  E++G +    +L   P  +IVG +  +D  V ++ +  G   D+  E++  +A 
Sbjct: 581 IDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADGTVSVRKQGEG---DVGTEKISTFAE 636


>gi|326201675|ref|ZP_08191546.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988275|gb|EGD49100.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 645

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/436 (19%), Positives = 168/436 (38%), Gaps = 33/436 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +Y   + +   RD      +L L T  + +  +G+   +P G + +  +   + +E+ R
Sbjct: 229 EEYVTKLEEAKKRDHNKLGRELELFT-TVEEIGQGLPLLMPKGARIVQTLQRFVEDEEER 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSH 121
            G +    P +  +DL+  SG +  Y   M  L D  ++++ M   P        I+ + 
Sbjct: 288 RGYVLTKTPFMAKSDLYKLSGHWQHYKDGMFLLGDEEKDEEVMALRPMTCPFQFMIYNTK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +   
Sbjct: 348 LHSYRDLPIRYGETSTLFRNEASGEMHGLIRVRQFTISEGH-LVCTPEQLEDEFKGVVDL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +   LG++             D+++ F       + +   +++  +       T  D
Sbjct: 407 IKFMMETLGIEE------------DVTYRFSKWDPKNKEKYIGNEEDWENVQGQMRTILD 454

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +       E   A Y    D+  + +       K  +   ++V     F     L M  
Sbjct: 455 HLKLDYKEAEGEAAFYGPKLDIQCKNV-----HGKEDTIITVQVD----FALAERLSMVY 505

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             K  + K  Y+ +    IG      A++   + G    W   V    + L++ K H   
Sbjct: 506 VDKNNEKKHPYI-IHRTSIGCYERTLAMLIEKYAGAFPTWLCPVQAKILPLVD-KHH--- 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L   G  V  D   E+IG +   A +   P  +++G K +  + V ++ 
Sbjct: 561 --DFAQKVAQMLRDKGVKVEVDTRNEKIGYKIREAQMEKIPYMLVIGDKEMESNAVSVRS 618

Query: 421 RLTGIREDMSLEEVIN 436
           R  G    MS E+ ++
Sbjct: 619 RKEGDLGAMSAEQFVD 634


>gi|221480967|gb|EEE19381.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
 gi|221501688|gb|EEE27452.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 844

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 64/150 (42%), Gaps = 5/150 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G K  + +   +REE    G  E+  P + S DLW  SG Y +Y KE + 
Sbjct: 414 SPGSCFWLPDGAKVYNKLCMFMREEYRFRGFQEVISPNIFSCDLWKVSGHYQNY-KENMY 472

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L D   K     P +      +F+    SYR LP       +  R+EL     G+ R R 
Sbjct: 473 LFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLPLRLADFGVLHRNELSGSLTGLTRVRR 532

Query: 155 FLMKDAYSF---DLTPEGSKHSYNKMFVSY 181
           F   DA+ F   D   E    + N +F  Y
Sbjct: 533 FQQDDAHIFCRLDQVKEEVADALNFLFFVY 562


>gi|69245748|ref|ZP_00603614.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257880251|ref|ZP_05659904.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257883051|ref|ZP_05662704.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257891365|ref|ZP_05671018.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257893638|ref|ZP_05673291.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258614441|ref|ZP_05712211.1| threonyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560451|ref|ZP_05832625.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293563269|ref|ZP_06677719.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294621403|ref|ZP_06700575.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939207|ref|ZP_07846461.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942550|ref|ZP_07849386.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948402|ref|ZP_07851791.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951256|ref|ZP_07854311.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314991679|ref|ZP_07857149.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314996805|ref|ZP_07861818.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195641|gb|EAN10081.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257814479|gb|EEV43237.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818709|gb|EEV46037.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257827725|gb|EEV54351.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257830017|gb|EEV56624.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260073453|gb|EEW61781.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291599050|gb|EFF30095.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291604721|gb|EFF34205.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313589100|gb|EFR67945.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593770|gb|EFR72615.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596608|gb|EFR75453.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313598686|gb|EFR77531.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313641458|gb|EFS06038.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645194|gb|EFS09774.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 646

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 155/389 (39%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 261 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPM 320

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 321 DMGDGEMLVLRPMNCPHHMMVYKNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 380

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 381 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 425

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 426 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTE 482

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 483 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 534

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  ++ AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 535 YKGAFPTW---LAPIQATIIPVSVDAHG----DYAYEIKERLQMKGLRVEVDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 588 KIRASQTQKIPYQLVVGDKELEDATVNVR 616


>gi|260655005|ref|ZP_05860493.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260630320|gb|EEX48514.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 623

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/434 (19%), Positives = 162/434 (37%), Gaps = 82/434 (18%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+   G   + P G   ++++    R      G  E   P + + DLWV+SG +D Y + 
Sbjct: 238 HKEGIGFPFFHPKGMVVMNSLLDFWRRLHTLNGYSEARTPMILNRDLWVQSGHWDHYQQN 297

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      ++      P +      I++  + SY+  P    ++    R E      G+MR
Sbjct: 298 MY-FTTIDEMPCAIKPMNCPGGILIYKDRLHSYKEFPIRLAELGHVHRHEKTGELHGLMR 356

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  TPE  K                                 D     +
Sbjct: 357 VRSFTQDDAHHF-CTPEQIK---------------------------------DEVKFIM 382

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDII------SLNSIVEQWTAPYAATS----- 260
            L D   ++VF  K  ++     +N+   D +      +L   +E+   PY         
Sbjct: 383 ALDDYVYSKVFGFKYHVELSTRPDNSIGSDELWATAEKALQETLEETNTPYVLNPGDGAF 442

Query: 261 -----DVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDH 310
                D H E                  +G  +  GT    +S+P      + G DGK+H
Sbjct: 443 YGPKIDFHLEDC----------------IGRTWQCGTIQLDFSMPEKFDMVYIGPDGKEH 486

Query: 311 Y-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKI 368
             V +    +G++     ++   + G    W   +AP ++ ++ + ++H    +D  +++
Sbjct: 487 RPVMLHRTILGSIERFMGILIEQYAGAFPYW---MAPVQVKILPVNESHVAYAKDLKDQL 543

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             R  +V  D+      E++G +   A +   P  +++G K V +  V ++ R  G +  
Sbjct: 544 ADRGHRVEIDL----SDEKLGKKIRNAQVEKVPFMLVIGDKEVENKTVALRDRAEGDKGS 599

Query: 429 MSLEEVINYASHRF 442
           +S E++    ++++
Sbjct: 600 VSQEQLFELLANQY 613


>gi|33861154|ref|NP_892715.1| threonyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|73919818|sp|Q7V287|SYT_PROMP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33639886|emb|CAE19056.1| Threonyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 638

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 3/171 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      +   +RE  N+   +E+  P      LW +SG +D + +
Sbjct: 255 IQEESPGMIFWHPNGWTIYQVLEKYVREILNKNDYLEIKTPQAVDKSLWEKSGHWDKFRE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M   A  N    I  P +      +F   +KSY++LP    +     R+E      G+M
Sbjct: 315 DMFTTASENRTYAI-KPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           R R F   DA+ F  T E  +   +        ++   G   I ++  + P
Sbjct: 374 RVRNFTQDDAHIF-CTEEQIQAEVSTFIDLVFEVYKTFGFDEIIIKLSTRP 423


>gi|299821392|ref|ZP_07053280.1| proline--tRNA ligase [Listeria grayi DSM 20601]
 gi|299817057|gb|EFI84293.1| proline--tRNA ligase [Listeria grayi DSM 20601]
          Length = 495

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++      G  +S      F   +G D  V   S+GI   R + A+I    D +G+
Sbjct: 239 GKALQIATSHDLGDVFSSAFGIEFTNREGIDTPVYQSSWGI-TTRTIGALIMVHGDDRGL 297

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ I  H +    A E I ARL + G     D   +Q G +F  +++ 
Sbjct: 298 MLPPRIAPIQVIIVPIAQHKEGVIAAGESILARLQEKGIRTKIDLSDKQPGWKFNESEMK 357

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G P+++ +G + +   +V +  R TG +  +++E +  Y +
Sbjct: 358 GIPIRIEMGPRDMEAGQVIVVRRDTGEKTAVAMEGLEAYVT 398


>gi|227550587|ref|ZP_03980636.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257888612|ref|ZP_05668265.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257897010|ref|ZP_05676663.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257898951|ref|ZP_05678604.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293378702|ref|ZP_06624860.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293571021|ref|ZP_06682064.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227180295|gb|EEI61267.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257824666|gb|EEV51598.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257833575|gb|EEV59996.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257836863|gb|EEV61937.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291608947|gb|EFF38226.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292642630|gb|EFF60782.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 647

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 155/389 (39%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 261 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPM 320

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 321 DMGDGEMLVLRPMNCPHHMMVYKNAIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 380

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 381 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 425

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 426 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTE 482

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 483 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 534

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  ++ AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 535 YKGAFPTW---LAPIQATIIPVSVDAHG----DYAYEIKERLQMKGLRVEVDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 588 KIRASQTQKIPYQLVVGDKELEDATVNVR 616


>gi|222475619|ref|YP_002564036.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Florida]
 gi|255003612|ref|ZP_05278576.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Puerto
           Rico]
 gi|254783506|sp|B9KH76|SYT_ANAMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222419757|gb|ACM49780.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Florida]
          Length = 636

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 9/199 (4%)

Query: 14  NPRDAEIASHKLMLR-TGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +  G  H  ++  G   W   G      +   IR +  + G +E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIRCKLKKHGYLEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + D + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E     +G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGP---IGGD 205
             S+ ++    P   IG D
Sbjct: 414 FDSVTVKLSDRPENRIGSD 432


>gi|156934293|ref|YP_001438208.1| hypothetical protein ESA_02124 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532547|gb|ABU77373.1| hypothetical protein ESA_02124 [Cronobacter sakazakii ATCC BAA-894]
          Length = 453

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 147/400 (36%), Gaps = 54/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 67  MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 126

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 127 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 185

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 186 RVRGFTQDDAHIF-CTEEQVRDEVNSCIRMVYDMYSTFGFEKIVVKLSTRPEKRIGTD-- 242

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  + +  + P    P E   +   I                     
Sbjct: 243 ----EMWDRAEADLAVALEENNIPFEYQPGEGAFYGPKIEFT------------------ 280

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L+D L        R  + G +      +SLP  +SA++ G + +     M    I G+
Sbjct: 281 --LYDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGENNERQVPVMIHRAILGS 328

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  
Sbjct: 329 MERFIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTRKLQNAGIRVKA 382

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 383 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 422


>gi|70726243|ref|YP_253157.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68446967|dbj|BAE04551.1| threonyl-tRNA synthetase 1 [Staphylococcus haemolyticus JCSC1435]
          Length = 645

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 173/405 (42%), Gaps = 41/405 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + +L+  SG +D Y  +M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELYKTSGHWDHYRDDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ + M+  P +      ++ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDETEEMVLRPMNCPHHMMVYNNRPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D++ F + P+  K  + ++      ++   G +    R +   P   +   +   + 
Sbjct: 382 TLNDSHIF-VRPDQIKDEFKRVVNMIQEVYSDFGFEDYTFRLSYRDPEDKEKYMDDDEMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  ET +  + D M  P             + +I E   A Y    DV   ++  ++ + 
Sbjct: 441 NKAETMLKEAVDEMGLPY------------VEAIGE--AAFYGPKLDV---QVKTAMGKE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   I+    F    ++ L    T+ G+DG++H   +   G+ +   R VA + E +
Sbjct: 484 ETLSTAQID----FLLPERFEL----TYIGSDGENHRPVVIHRGVVSTMERFVAFLTEET 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I  N+  H    R+  +++ ++    G  V  DD  E++G 
Sbjct: 536 ---KGA-FPTWLAPKQVEIIPVNVDLHYDYARNLQDELKSQ----GVRVEIDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 588 KIREAQMQKIPYQIVVGDKEVENNQVNVRKYGSQDQETVEKDEFI 632


>gi|319952066|ref|YP_004163333.1| prolyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319420726|gb|ADV47835.1| prolyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 491

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +GK   V   S+G+ + R++ A++ +  D KG+
Sbjct: 233 GKALQAGTSHFLGQNFAKAFDVKFTSKEGKQELVWATSWGV-STRLMGALVMTHSDDKGL 291

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMGE-QIGSQFAV 394
           + P  +AP ++ ++ I   D+      E+I   L ++   G  V +D+    + G +FA 
Sbjct: 292 VLPPKLAPIQVVIVPIYKGDEQLDAISERIAPLLKELRAKGVSVKYDNRDTYKPGFKFAE 351

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + +   E+  R T  +E +  +E++
Sbjct: 352 YELKGVPIRLAIGQRDMDNGTFEVARRDTLEKETVQADEIV 392



 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D +R  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETIIWDTYRRWIQSYRDLPILINQWANVVRWEMRTRL-FLRTSEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + +     +M   Y
Sbjct: 174 HTAHATEKEAVAEAEQMMNIY 194


>gi|261208968|ref|ZP_05923373.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289565220|ref|ZP_06445672.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294615018|ref|ZP_06694907.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|260077007|gb|EEW64729.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289163041|gb|EFD10889.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592149|gb|EFF23769.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 647

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 155/389 (39%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 261 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPM 320

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 321 DMGDGEMLVLRPMNCPHHMMVYKNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 380

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 381 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 425

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 426 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTE 482

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 483 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 534

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  ++ AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 535 YKGAFPTW---LAPIQATIIPVSVDAHG----DYAYEIKERLQMKGLRVEVDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 588 KIRASQTQKIPYQLVVGDKELEDATVNVR 616


>gi|221197733|ref|ZP_03570779.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204709|ref|ZP_03577726.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221175566|gb|EEE07996.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221181665|gb|EEE14066.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 635

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++N + +S   ++   G + I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQFIAESIAFNTLAMS---VYKDFGFEHIDIKLSLRPEQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWDRAEQGLRDALTACGLSWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G   +W   +AP +  ++NI A  QV  +  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPVW---LAPVQAVVLNI-AESQV--EYAQSLAQTLQKQGVRVTADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|326803832|ref|YP_004321650.1| threonine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651446|gb|AEA01629.1| threonine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 651

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 165/406 (40%), Gaps = 38/406 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I +++ + G   +  P +   DL+  SG +D Y  +M   
Sbjct: 265 QGLPFWLPNGATIRRQVERYIVDKEVQAGYQHVYTPIMADVDLYKTSGHWDHYSDDMFPT 324

Query: 97  ADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            D  D ++ +  P +      ++++ + SYR LP    ++ +  R E      G+ R RE
Sbjct: 325 MDFEDGESFVLRPMNCPHHIRVYQNKVHSYRELPIRIAELGMMHRYEKSGALSGLQRVRE 384

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + D++ F +  +  K  +  +       +H   +     R         LS+      
Sbjct: 385 MTLNDSHIF-VRLDQIKDEFKSILRFMQDAYHDFNITDYRYR---------LSYR----- 429

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPE 273
           D  +T+ +   D M     S   +  D + L+    E   A Y    DV   ++  +L  
Sbjct: 430 DPKDTKKYFDDDEMWEKAQSMLKEAMDELGLDYFEAEGEAAFYGPKLDV---QVKTALGN 486

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAM--RVVAAVIE 330
            + +S   ++    F    K+ +    T+ G DG++ H   M   GI +   R VA +IE
Sbjct: 487 EETLSTIQLD----FLLPEKFDV----TYVGEDGQNTHRPVMIHRGIVSTMERFVAYLIE 538

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                KG  +P  +AP +  LI +  +     D   ++  R+   G  +  DD  E++G 
Sbjct: 539 EY---KG-AFPTWLAPQQAILIPVNENQHA--DYVYQVANRMRSEGLRIEVDDRNEKMGY 592

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +   A     P Q++ G   + +  V ++   +   E + L+E IN
Sbjct: 593 KIREAQTRKVPYQLVFGDNEIENGTVTVRRYGSKKTETVDLDEFIN 638


>gi|325528727|gb|EGD05797.1| threonyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 635

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++N + +S   ++   G + I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQFIAESIAFNTLAMS---VYKDFGFEHIDIKLSLRPEQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWDRAEQGLRDALTACGLSWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G    W   +AP ++ ++NI A  Q   D  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPAW---LAPIQVVVMNI-AESQA--DYAQSLAQTLQKQGVRVTADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|293556705|ref|ZP_06675269.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601167|gb|EFF31455.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 646

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 155/389 (39%), Gaps = 40/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 261 GLPFWLPKGATIRRTIERYIVDKEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPM 320

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 321 DMGDGEMLVLRPMNCPHHMMVYKNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 380

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 381 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 425

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 426 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTE 482

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 483 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 534

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  ++ AH     D   +I  RL   G  V  DD  E++G 
Sbjct: 535 YKGAFPTW---LAPIQATIIPVSVDAHG----DYAYEIKERLQMKGLRVEVDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   +     P Q++VG K + D+ V ++
Sbjct: 588 KIRASQTQKIPYQLVVGDKELEDATVNVR 616


>gi|255004741|ref|ZP_05279542.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Virginia]
          Length = 636

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 9/199 (4%)

Query: 14  NPRDAEIASHKLMLR-TGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +  G  H  ++  G   W   G      +   IR +  + G +E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIRCKLKKHGYLEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + D + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E     +G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGP---IGGD 205
             S+ ++    P   IG D
Sbjct: 414 FDSVTVKLSDRPENRIGSD 432


>gi|269125121|ref|YP_003298491.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268310079|gb|ACY96453.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 477

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT ++   +  ++  +G   Y    S+G+ + R++  VI +  D KG+
Sbjct: 215 GRALQAGTSHYLGTNFAKAFNIQYQDEEGALQYAHTTSWGM-STRMIGGVIMTHGDDKGL 273

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACE--KIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  +AP+++ ++ I   +Q    A E  ++ A +  +G  V  DD   Q+   F   D
Sbjct: 274 VLPPRLAPYQVVIVPIGRKEQGEATAAEARRLGAAIKSMGIRVHVDDNRPQLSPGFKFND 333

Query: 397 --LLGFPLQVIVGSKFVSDSKVEIKHRL 422
             + G P+++ +G + ++D    +  RL
Sbjct: 334 WEMRGVPIRIEIGPRDLADGVGTLARRL 361


>gi|332521036|ref|ZP_08397494.1| threonyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332043129|gb|EGI79326.1| threonyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 644

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 163/432 (37%), Gaps = 63/432 (14%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +   G+  WLP G    + +   ++  Q + G
Sbjct: 229 YLALLEEAKKRDHRKLGKELELFT-FSQKVGAGLPLWLPKGTALRERLENFLKAAQKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG++  +     ++D+  +  P +     +I+ +   
Sbjct: 288 YEMVMSPHIGQKELYVTSGHYAKYGEDSFQPIKTPKDDEEFLLKPMNCPHHCEIYNASQW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +    L
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CTPDQLDAEFKNVIDLVL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG ++   +              + L D    + +                    
Sbjct: 407 YVFGSLGFENFTAQ--------------VSLRDPENPEKYIGS----------------- 435

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT-- 292
                 +E W     A      +K  + + E    +  G +        +G  +  GT  
Sbjct: 436 ------LENWEKAEQAIISAAKDKGLNYVIETGEAAFYGPKLDFMVKDALGRQWQLGTIQ 489

Query: 293 -KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y+LP     T+KG+D + H  V +     G+M    A++     G   +W   + P +
Sbjct: 490 VDYNLPERFDLTYKGSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLW---LMPNQ 546

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +S++ +    +      EK+   L         D+  E IG +   A++   P  +I+G 
Sbjct: 547 VSILTL---SEKYEKYGEKVLNLLENHEIRALIDNRSETIGKKIREAEMNKTPYMIIIGE 603

Query: 409 KFVSDSKVEIKH 420
               ++K+ ++ 
Sbjct: 604 NEEKENKISVRQ 615


>gi|222528807|ref|YP_002572689.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455654|gb|ACM59916.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 647

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 165/407 (40%), Gaps = 44/407 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K L  +   + +E+ + G +    P +  +DL+  SG +D Y   M  +
Sbjct: 264 QGLPLLMPKGAKILQILQRFVEDEEEKRGYLLTKTPYMAKSDLYKISGHWDHYRDGMFVI 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +  ++ +   P        I+ S  +SYR+LP  + +    FR+E      G++R R+F
Sbjct: 324 EEDENEVLALRPMTCPFQFLIYNSKQRSYRDLPIRYSETSTLFRNESSGEMHGLIRVRQF 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+     P+  +  +  +      I   LG+++            D+ + F     
Sbjct: 384 TLSDAHII-CRPDQVEEEFKGVLDLIQYIMKILGIEN------------DIWYRFSRWDP 430

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD-----DIISLNSIVEQWTAP-YAATSDVHNEKLFD 269
             + +      ++D P   E T+ D     D + +N    +  A  Y    D+  + ++ 
Sbjct: 431 NNKEK------YIDNPEAWEKTENDMKNILDKLGINYKEAKGEAAFYGPKLDIQFKNVY- 483

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
                K  +   I++   F    ++ +    T+   DG K   + +    IG      A+
Sbjct: 484 ----GKEDTIITIQID--FALAERFDM----TYVDRDGQKKRPIIIHRSSIGCYERTLAM 533

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   ++G   +W   +AP +I +I +  +     +  + +   L + G  V  D   E +
Sbjct: 534 LIEKYNGAFPLW---LAPVQIRVIPVSDN---FNEYAKNVARILKENGFRVEEDYRSETV 587

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A L   P  VIVG K   ++ V ++ R  G     ++E+ I
Sbjct: 588 GYKIRDAQLQKIPYMVIVGEKEQKENTVAVRDRKKGDLGSFTIEDFI 634


>gi|84516459|ref|ZP_01003818.1| threonyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84509495|gb|EAQ05953.1| threonyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 648

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 161/432 (37%), Gaps = 68/432 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R  Q   G +E++ P +    LW +SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPDGWTIYTELQDYMRRRQRAGGYVEVNTPQVVDRKLWEKSGHWDKYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSF----DLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESG 200
             G+MR R F   D + F     + PE ++      F+++L R++  LG     ++  + 
Sbjct: 380 LHGIMRVRGFTQDDGHIFCREDQIEPETAR------FIAFLSRVYADLGFNDWTIKLSTR 433

Query: 201 P---IGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           P   IG D + + +   L D       C     DF                 ++E   A 
Sbjct: 434 PEQRIGSDATWDMMEKALGDA------CRAAGYDF----------------ELLEGEGAF 471

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-V 312
           Y    +     L D++  N +     ++           +LP  + A + G DG+ H  V
Sbjct: 472 YGPKLEF---TLTDAIGRNWQCGTLQVDA----------NLPERLDAEYIGTDGEKHRPV 518

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYAR 371
            +    +G+      ++   H GK   W   +AP ++ +  I +  D   RD    + A 
Sbjct: 519 MLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVATIVSDADDYARD----LVAA 571

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G     D   E+I  +     +   P+ + VG++ V +     +         +++
Sbjct: 572 LTAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGAREVEERTATARQLGETQTRVVTM 631

Query: 432 EEVINYASHRFS 443
           +E++     R +
Sbjct: 632 DEIVAELKQRAT 643


>gi|295693387|ref|YP_003601997.1| threonyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295031493|emb|CBL50972.1| Threonyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 645

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 160/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQTEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N+ AH +      EK+   L+K G     D   E++G +
Sbjct: 534 KGAFPTW---LAPVQVEIIPVNLDAHGEY----AEKVRQELAKRGFRAEVDTRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G   +  + V ++   T     MSL++ I 
Sbjct: 587 IRESQTQKVPYTLVLGDDEMKANGVNVRPYGTDQENSMSLDDFIK 631


>gi|221214904|ref|ZP_03587872.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221165131|gb|EED97609.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
          Length = 635

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++N + +S   ++   G + I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQFIAESIAFNTLAMS---VYKDFGFEHIDIKLSLRPEQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWDRAEQGLRDALTACGLSWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G   +W   +AP +  ++NI A  QV  +  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPVW---LAPVQAVVLNI-AESQV--EYAQSLAQTLQKQGVRVTADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|126651780|ref|ZP_01723982.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591458|gb|EAZ85565.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 483

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 81/161 (50%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + + ++ G   Y GTK++   +  +     +  YV   S+G  + R++ +VI    D +G
Sbjct: 219 NGKAVQAGTSHYLGTKFAEAFNIKYLNKANQHEYVHTTSWGT-STRLIGSVIMVHGDEQG 277

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           ++ P  +AP ++ LI +   K + Q+  +  + I+A L   G  V  DD  +  G +F  
Sbjct: 278 LVLPPRIAPTQVVLIPVGPWKKNPQIM-EQLDAIFAALKAKGIRVRLDDSDQSPGFKFNE 336

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G P+++ +G + + +++  +K R    ++ + L  ++
Sbjct: 337 WELKGVPVRIELGPRDLENNQALLKARDEDDKQTIELSTIV 377


>gi|315641145|ref|ZP_07896224.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483153|gb|EFU73670.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 650

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 166/416 (39%), Gaps = 48/416 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G + +  P +   +L+  SG +D Y ++M    
Sbjct: 261 GLPFWLPKGATIRRIIERYIVDKEVSLGYMHVYTPIMADVNLYKTSGHWDHYHEDMFPPM 320

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 321 DMGDGEMLVLRPMNCPHHIMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 380

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +       ++   G+     R         LS+      D
Sbjct: 381 TLNDGHTF-VRPDQIKEEFKRTLDLMTAVYKDFGIDDYRFR---------LSYR-----D 425

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M            D + L+    E   A Y    DV   ++  +L   
Sbjct: 426 PNNTDKYFDDDKMWENAQKMIKAAMDELGLDYFEAEGEAAFYGPKLDV---QVKTALGME 482

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGI-GAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ H   M   GI   M    A +   
Sbjct: 483 ETLSTIQLD----FLLPERFEL----TYVGEDGENSHRPVMIHRGIVSTMERFVAYLTEV 534

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP ++ +I  ++ AH +   +  E    RL + G     D   E++G 
Sbjct: 535 YKGAFPTW---LAPVQVEIIPVSVDAHSEYAYEVKE----RLLEKGIRAEVDGRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH---RLTGIRE-----DMSLEEVINYA 438
           +   A     P Q++VG + ++D+ V I+    + T + E     D  + +V NY+
Sbjct: 588 KIRAAQTQKIPYQLVVGDQEMNDATVNIRRYGSKETAVEELNMFVDAIVADVQNYS 643


>gi|292493207|ref|YP_003528646.1| threonyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291581802|gb|ADE16259.1| threonyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 644

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 154/406 (37%), Gaps = 47/406 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P+G +    +    RE     G   +  P +    LW  SG  D Y + M +  
Sbjct: 262 GLVFWHPMGARIRQVIEDFWRERHRAAGYETLYTPHIAHQQLWQTSGHTDFYRESMYQPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + +     P +      +++  ++SYR LP  + ++   +R E+     G+MR R F 
Sbjct: 322 EEDHQLYQLKPMNCPFHVLVYKGRLRSYRELPLRWAELGTVYRHEMSGALHGLMRVRGFT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F    E  +     +    L +    G +   +   + P   +G D   E    
Sbjct: 382 QDDAHIF-CREEQIEDEILGILDLTLEMLSAFGFERYEVDLSTRPEKSVGSDAIWERATQ 440

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A     +    K  +D+ +      F                Y    D+   K+ D++  
Sbjct: 441 A----LRSALEKKGLDYAVDEGGGAF----------------YGPKIDI---KIEDAIGR 477

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIE 330
             + S   ++          ++LP      +   DG  H  + +    +G++     V+ 
Sbjct: 478 KWQCSTVQLD----------FNLPERFEMEYVAEDGARHQPIMIHRAVLGSLERFFGVLI 527

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             ++GK   +P  +AP +++++NI   D+    AC+ +   L   G     D   E+IG 
Sbjct: 528 EHYEGK---FPPWLAPVQVAVMNIT--DRQAEYACQ-VEETLKNKGFRSLLDLRNEKIGF 581

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +     L   P  +++G + V +  V ++ R +     MSL+  I 
Sbjct: 582 KIREHTLRRVPYLLVIGDREVENQTVAVRTRYSKDLGAMSLDAFIE 627


>gi|195443008|ref|XP_002069231.1| GK21088 [Drosophila willistoni]
 gi|194165316|gb|EDW80217.1| GK21088 [Drosophila willistoni]
          Length = 699

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/409 (20%), Positives = 167/409 (40%), Gaps = 44/409 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   ++ E  + G  E+  P + +A LW+ SG +  Y + 
Sbjct: 314 HELSPGSCFFQPRGAHIYNTLMNFMKAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAEN 373

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ R
Sbjct: 374 MFSFEVEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTR 432

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  TP+  K            +++  G  S  +   + P          
Sbjct: 433 VRRFQQDDAHIF-CTPDQIKSEMKGCLDFLHHVYNIFGF-SFQLVLSTRP-----EKYLG 485

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L    + +   ++   +F IP +    D             A Y    D+    + D+L
Sbjct: 486 ELEQWNDAEKALAESLDEFGIPWKENPGD------------GAFYGPKIDI---TIMDAL 530

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIE 330
               + +   ++    F    +++L     +   DG K   V +    +G++  + A++ 
Sbjct: 531 KRAHQCATIQLD----FQLPIRFNL----NYIADDGEKKRPVIIHRAILGSVERMIAILT 582

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYAR--LSKVGCDVFWDDMGEQ 387
            ++ GK   WP  ++P ++ ++ +  A+D+  +   E+++A   +S+  CD      G+ 
Sbjct: 583 ENYAGK---WPFWLSPRQVMVVPVGPAYDEYAQSVREQLHAAGFMSEADCDA-----GDT 634

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I+
Sbjct: 635 MNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELIS 683


>gi|46199818|ref|YP_005485.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|73919837|sp|Q72HH1|SYT_THET2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46197445|gb|AAS81858.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 659

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-- 93
            KG+  WLP G    + + A +REEQ R G   ++ P + S +L+  SG Y  Y +    
Sbjct: 270 GKGLVLWLPKGNVVREELMAFMREEQVRRGYQLVTTPHIGSLELYKTSGHYPYYAESQFP 329

Query: 94  -LRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
            +   +R  ++  +  P +      I+    +SYR LP    +    +R E      G+ 
Sbjct: 330 PISFKERGEEEEYLLKPMNCPHHIRIYAYRKRSYRELPLRLAEFGTVYRYEKAGELLGLT 389

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F   DA+ F  TPE  K  +  +    L++F  LGLK    R
Sbjct: 390 RVRGFTQDDAHIF-CTPEEVKGEFLGVLDLVLKVFATLGLKDYRAR 434


>gi|124516423|gb|EAY57931.1| Threonyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 617

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +   G+  WLP G +    +  + +   +R G   +  P +   DLW++SG +D Y  
Sbjct: 228 LDEKGAGLVLWLPRGSQIRRTLEELWKILHDRHGYRYVYTPHIARLDLWMQSGHWDYYQD 287

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M R  +    A    P +      IFR  ++SYR+LP    ++   +R E      G+M
Sbjct: 288 SMFRPMETEGTAYELKPMNCPFHILIFRESVQSYRDLPIRLSELGTVYRYERSGTLHGLM 347

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 348 RVRGFTQDDAHIF 360


>gi|310829146|ref|YP_003961503.1| hypothetical protein ELI_3581 [Eubacterium limosum KIST612]
 gi|308740880|gb|ADO38540.1| hypothetical protein ELI_3581 [Eubacterium limosum KIST612]
          Length = 483

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/408 (18%), Positives = 153/408 (37%), Gaps = 76/408 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG     P G    +N+     E    TG   M  P L    L   E+   + +  E+  
Sbjct: 39  KGFMVIRPYGYAIWENIQKAYDERFKATGHQNMYFPLLIPESLLKKEAEHVEGFAPEVAW 98

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    DK     +   PT E ++  ++   + SYR LPF + Q    +++    RP    
Sbjct: 99  VTKGGDKELAEPLCVRPTSETIICSMYAKWLHSYRQLPFLYNQWCSVVRWEKTTRP---F 155

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++   TPE ++    +M   Y  +     + +IP               
Sbjct: 156 LRTSEFLWQEGHTLHETPEEAQEETMQMLNIYREVAE--DIMAIP--------------- 198

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +V+    E + F                               A Y   + +H+     
Sbjct: 199 -VVVGQKSEKEKFAGA---------------------------AATYTMEALMHD----- 225

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     + ++ G     G  ++     T+   + +  Y    S+G+ + R++  +I
Sbjct: 226 ---------GQALQSGTSHNLGQHFTKAFDITYLDRNNEQAYPYHTSWGV-STRLIGGII 275

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGE 386
               D  G++ P  +AP ++ +I +  H +   D   ++   L    +V  D   D+   
Sbjct: 276 MVHGDDNGLVLPPRIAPTQLVIIPVAQHKEGVLDKAYELKDILGAEFRVELD---DNDSN 332

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             G +F   ++ G P+++ +G + + + +  +  R TG +  ++L+++
Sbjct: 333 SPGWKFNQWEMKGVPIRLEIGPRDIENGQCVLARRDTGEKVQVALDDI 380


>gi|124010058|ref|ZP_01694720.1| threonyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123983945|gb|EAY24340.1| threonyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 578

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 143/393 (36%), Gaps = 77/393 (19%)

Query: 15  PRDAEIASHKLMLRTGMIHQH----------------SKGIYSWLPLGQKALDNVNAIIR 58
           P+  E+  H  +L       H                 KG+  WLP G    + +   +R
Sbjct: 227 PKQKELKEHLALLEEAKKRDHRKLGKELELFTFSERVGKGLPLWLPKGALLRERLENFMR 286

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTD 116
             Q + G   +  P + S  L+  SG ++ YG++  +     +  +  +  P +     +
Sbjct: 287 RAQIKAGYSPVVTPHIGSKKLYETSGHWEKYGEDSFQPIATPQEGEEFMLKPMNCPHHCE 346

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+ S  +SY++LP    +    +R E      G+ R R F   DA+ F  TP   K  + 
Sbjct: 347 IYASKPRSYKDLPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPAQVKEEFG 405

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L +F  LG +    +              I L D      +  KD         
Sbjct: 406 KVIDLVLYVFSALGFEDYTAQ--------------ISLRDPENKSKYFGKD--------- 442

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI-------- 287
                         E W     A  DV  +K   ++ E    +  G ++  +        
Sbjct: 443 --------------EDWEQAEQAIIDVAAQKGLQTVTELGEAAFYGPKLDFMVKDALKRK 488

Query: 288 FYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +  GT    Y LP      + G+D + H  V +     G++    AV+     GK  +W 
Sbjct: 489 WQLGTVQLDYQLPDRFELEYTGSDNERHRPVMIHRAPFGSLERFIAVLTEHCAGKFPLW- 547

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +AP +I+++ I    Q   D  +++YA+L +
Sbjct: 548 --LAPEQIAILPI---SQKFHDYAQEVYAQLEE 575


>gi|114767278|ref|ZP_01446118.1| threonyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114540584|gb|EAU43657.1| threonyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 649

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 151/406 (37%), Gaps = 64/406 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G   W P G     ++   +R +Q+R G +E++ P +    LW  SG +D+Y +
Sbjct: 260 LQPEAPGQIFWHPNGWTIYTSLQDYMRRQQHRDGYVEVNTPQVVDRKLWEASGHWDNYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF S +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEHAREKSINALKPMNCPCHVQIFNSGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP--- 201
             G+MR R F   DA+ F    +    +  K F+ +L  I+  LG  +  ++  + P   
Sbjct: 380 LHGIMRVRGFTQDDAHIF--CTDDQIEAETKKFIEFLAGIYADLGFHNWTIKLSTRPEKR 437

Query: 202 IGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           IG + S + +   L D       C      F +      F                    
Sbjct: 438 IGSEESWDRVEAALGDA------CKAAGYGFELQEGEGAF-------------------- 471

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-----MSATFKGADGKDHY-VQ 313
              +  KL  +L +          +G  +  GT    P     + A++ G DG+ H  V 
Sbjct: 472 ---YGPKLEFTLTDA---------IGREWQCGTLQVDPNLPDRLDASYIGQDGEKHRPVM 519

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+      ++   H GK   W   +AP ++ + +I +      D   ++ A L 
Sbjct: 520 LHRAVLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITSE---ADDYVHEVVAELK 573

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             G     D   E+I  +     +   P+ + VG + V +  V ++
Sbjct: 574 AAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTVTVR 619


>gi|262047409|ref|ZP_06020366.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|260572383|gb|EEX28946.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
          Length = 644

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 160/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQTEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N+ AH +      EK+   L+K G     D   E++G +
Sbjct: 534 KGAFPTW---LAPVQVEIIPVNLDAHGEY----AEKVRQELAKRGFRAEVDTRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + + +  V ++   T      SL + IN
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLTDFIN 631


>gi|300023435|ref|YP_003756046.1| prolyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525256|gb|ADJ23725.1| prolyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 510

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 121/324 (37%), Gaps = 64/324 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D F+  IKSYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEPLIVRPTSETIIGDAFQRWIKSYRDLPLLVNQWANVVRWEMRTRL-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++     + +     KM   Y R F    L ++P+ A   P                   
Sbjct: 174 HTAHADKDDAVAETLKMLEVY-RTFAEDVL-AMPVIAGEKPAN----------------- 214

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                    FP        D+  S+ ++++   A  A TS                    
Sbjct: 215 -------ERFP------GADNTYSIEAMMQDGKALQAGTS-------------------- 241

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                   Y GT ++   +  F+ ADGK  Y    S+G+ + R++  VI +  D  G+  
Sbjct: 242 -------HYLGTHFAEAQNIQFQNADGKLTYCHTTSWGV-STRLIGGVIMTHGDDDGLRL 293

Query: 341 PDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           P ++AP +I ++ +   K  D    + C  +   L   G     D    +   +      
Sbjct: 294 PPAIAPRQIVIVPMLREKPEDAALIEYCAALEKDLKAAGIRTLVDAKAVKSAEKRWNWVR 353

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
            G P+ V +G +  S   V    R
Sbjct: 354 RGAPVIVEIGGRDASGGNVTFMRR 377


>gi|42560874|ref|NP_975325.1| prolyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|81829401|sp|Q6MTR9|SYP_MYCMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42492371|emb|CAE76967.1| proline-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 474

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 157/392 (40%), Gaps = 73/392 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIEGFSPEIAT 94

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +      + ++ +   PT E VM D F + I SYR+LP  + Q    +++    RP    
Sbjct: 95  VTRVGQKKLEENLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRP---F 151

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++          SYN+     L+I +               I    + E
Sbjct: 152 LRTSEFLWQEGHTI-------HSSYNEAENFCLKILN---------------IYEKFAKE 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            ++L       V C K        +E   F                 A   D +      
Sbjct: 190 ILLLP------VICGK-------KTEKEKF-----------------AGAKDTYT----- 214

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E+     + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I
Sbjct: 215 --IESLMFDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALI 271

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D  G++ P  ++P +I +I IK  +Q+     E I  +LS    DV  D+  +  G
Sbjct: 272 MTHSDDNGLVLPSKISPIQIQIIQIKNTEQI-DQVVENIKDKLSDYRIDV--DNSDKSFG 328

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + + A++ G P+++ +G + + ++++ I  R
Sbjct: 329 FKISEAEIKGIPIRIEIGPRDLENNQITISRR 360


>gi|147671507|ref|YP_001215778.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|262168212|ref|ZP_06035910.1| threonyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|172047342|sp|A5EZ18|SYT_VIBC3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146313890|gb|ABQ18430.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227014955|gb|ACP11164.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|262023455|gb|EEY42158.1| threonyl-tRNA synthetase [Vibrio cholerae RC27]
          Length = 642

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   IR + N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSVFRELEIFIRHKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   MD P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMDIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|65317824|ref|ZP_00390783.1| COG0442: Prolyl-tRNA synthetase [Bacillus anthracis str. A2012]
          Length = 383

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D  G+
Sbjct: 98  GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGL 156

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F   ++ 
Sbjct: 157 VMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTPGWKFNEYEMK 215

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 216 GIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQL 251


>gi|227877040|ref|ZP_03995129.1| theronyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256843644|ref|ZP_05549132.1| threonyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256850110|ref|ZP_05555540.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|293381761|ref|ZP_06627738.1| threonyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|227863358|gb|EEJ70788.1| theronyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256615064|gb|EEU20265.1| threonyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256713082|gb|EEU28073.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|290921681|gb|EFD98706.1| threonyl-tRNA synthetase [Lactobacillus crispatus 214-1]
          Length = 644

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 160/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQTEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N+ AH +      EK+   L+K G     D   E++G +
Sbjct: 534 KGAFPTW---LAPVQVKIIPVNLDAHGEY----AEKVRQELAKRGFRAEVDTRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + + +  V ++   T      SL + IN
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLTDFIN 631


>gi|260597637|ref|YP_003210208.1| threonyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260216814|emb|CBA30296.1| Threonyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 642

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 147/400 (36%), Gaps = 54/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHVF-CTEEQVRDEVNSCIRMVYDMYSTFGFEKIVVKLSTRPEKRIGTD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  + +  + P    P E   +   I                     
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQPGEGAFYGPKIEFT------------------ 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L+D L        R  + G +      +SLP  +SA++ G + +     M    I G+
Sbjct: 470 --LYDCLD-------RAWQCGTV---QLDFSLPARLSASYVGENNERQVPVMIHRAILGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  
Sbjct: 518 MERFIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTRKLQNAGIRVKA 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 572 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|225016667|ref|ZP_03705859.1| hypothetical protein CLOSTMETH_00576 [Clostridium methylpentosum
           DSM 5476]
 gi|224950631|gb|EEG31840.1| hypothetical protein CLOSTMETH_00576 [Clostridium methylpentosum
           DSM 5476]
          Length = 646

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 88/460 (19%), Positives = 174/460 (37%), Gaps = 68/460 (14%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD  +   KL   T  +    +G+   LP G + +  +   + +E+ + G
Sbjct: 232 YLAAVEEAKKRDHNVIGRKLGYFT-TVDVIGQGLPVLLPKGARVIQILQRFVEDEEEKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIK 123
            +    P    +D +  SG +  Y + M  + D      ++   P         + + ++
Sbjct: 291 YLLTKTPYFAKSDFYKISGHWQHYREGMFVMGDEEKDKEVFALRPMTCPFQFQAYLNEMR 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    FR+E      G++R R+F + + +     P+  +  + +      
Sbjct: 351 SYRDLPLRYNETSTLFRNEASGEMHGLIRVRQFTISEGH-LACRPDQVEEEFKQCLELAK 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LGL              D+++ F    +    +   S +        E  +  ++
Sbjct: 410 FMLETLGLDE------------DVTYRFSKWDENNRDKYIGSAE--------EWENVQNL 449

Query: 243 IS--LNSIVEQWT------APYAATSDVHNEKLF---DSLPENKRVSARGIEVGHIFYFG 291
           +   LN +   +T      A Y    D+  + ++   D+L          I +   F   
Sbjct: 450 MRGILNHLELDYTEADGEAAFYGPKLDIQIKNVYGKEDTL----------ITIQIDFQLA 499

Query: 292 TKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           +++ +  + T    DG+  Y   +    +G      A++   + G   +W   +AP +  
Sbjct: 500 SRFDMVYTDT----DGQKKYPYVIHRTSLGCYERTLALLLEKYAGALPLW---IAPEQAR 552

Query: 351 LINI--KAHDQ--VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           ++ I  + HD    CRD        L K G  V  DD  E+IG +   A L   P  +++
Sbjct: 553 ILPIGERQHDAAYACRD-------ELRKAGLRVEVDDRSEKIGYKIREAQLEKIPYMLVI 605

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G K V  + V ++ R  G   +M    V  +  H  +  R
Sbjct: 606 GDKEVEANAVSVRSRKHG---EMGAMPVTQFMEHALNEVR 642


>gi|210623612|ref|ZP_03293938.1| hypothetical protein CLOHIR_01888 [Clostridium hiranonis DSM 13275]
 gi|210153482|gb|EEA84488.1| hypothetical protein CLOHIR_01888 [Clostridium hiranonis DSM 13275]
          Length = 638

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 151/400 (37%), Gaps = 47/400 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI +   G    LP G    + +    RE       +E+  P + +  LW  SG +  Y 
Sbjct: 253 MIPEEGPGFPLMLPKGMALKNALLEYWREVHRAAEYVEIETPIILNRKLWETSGHWYHYK 312

Query: 91  KEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M  +  D  D A+   P +       ++S + SYR+ P    ++    R EL     G
Sbjct: 313 ENMYTVKIDEEDYAI--KPMNCPGGMLYYKSEMHSYRDFPMRVAELGRVHRHELSGALHG 370

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           +MR R F   DA+ F + PE  +     +      I+   G +    +  R E   +G D
Sbjct: 371 LMRVRAFTQDDAHIF-MLPEQIRDEIKGVISLIDGIYKTFGFEYHLELSTRPEDS-MGSD 428

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E        E  +  + + ++ P      D               A Y    D H  
Sbjct: 429 EEWE------AAENGLRGALEELNLPFVVNEGD--------------GAFYGPKIDFH-- 466

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRV 324
            L D +        R  + G I     +      AT+ G DG+ H  V +     G++  
Sbjct: 467 -LTDCI-------GRTWQCGTI-QLDMQLPRQFDATYIGQDGEKHRPVMIHRVAFGSIER 517

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK  +W   +AP ++ +I I   D+   D  EK+   L   G  V  D  
Sbjct: 518 FIGILIEQYAGKFPVW---LAPTQVKIIPIS--DKYA-DYAEKVRKELFDNGLRVEVDGR 571

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++G +   A L   P  VIVG K  +++ + ++ R  G
Sbjct: 572 VEKVGFKIREAQLEKVPYMVIVGEKEEAENNISVRSRDEG 611


>gi|320167861|gb|EFW44760.1| threonyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 726

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 162/415 (39%), Gaps = 54/415 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + +   IR E    G  E+  P + ++ LW +SG +  Y 
Sbjct: 327 FFHELSPGSCFFLPHGTRIYNTLMEFIRSEYWARGFTEVITPNMYNSKLWQQSGHWQHYA 386

Query: 91  KEMLRLADRNDKAMIY---GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           + M       +K  +     P H  +    FRSH    + LP  F    +  R+E     
Sbjct: 387 ENMFSFDIEKEKFALKPMNCPGHCLMFDQAFRSH----KELPIRFADFGVLHRNEASGAL 442

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--G 204
            G+ R R F   DA+ F    + +    N +  ++L+  + +   +  ++  + P G  G
Sbjct: 443 TGLTRVRRFQQDDAHIFCKPSDIANEIDNAL--AFLKAVYTVFGFTFQLKLSTRPEGFLG 500

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D     I L D  E Q+   +    F  P +    D             A Y    D+  
Sbjct: 501 D-----IALWDKAEKQL--EESLNKFGAPWKLNPGDG------------AFYGPKIDI-- 539

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
             + D+L  + + +   ++      FG KY  P        DG +   V +    +G++ 
Sbjct: 540 -TIMDALRRSHQCATIQLDFQLPIRFGLKYQAP--------DGTEQTPVIIHRAILGSVE 590

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV---F 380
            + A++  +  GK   WP  ++P +  +I +    + C D   ++  +L   G  V    
Sbjct: 591 RMIAILTENFAGK---WPFWLSPRQALVIAV---SKDCNDYAHEVQKQLHDAGFHVDYDL 644

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           W D  E +  +   A L  +   ++VG++        ++ R   +  + ++ ++I
Sbjct: 645 WPD--ETLNKKVRNAQLAQYNFILVVGARERESRSANVRTRDNKVHGERTIPQLI 697


>gi|294101290|ref|YP_003553148.1| prolyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616270|gb|ADE56424.1| prolyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 479

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 24/170 (14%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  +S      F+   G+  Y    S+G+ + R++ A+I +  D  G+I
Sbjct: 220 KALQAGTSHFLGQNFSRAFDIQFQNQKGEQEYAWTTSWGV-STRLIGALIMTHSDNDGLI 278

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD--- 396
            P  VAP +++++ I  +D V     E++  R  +     F D + + +G +F   D   
Sbjct: 279 LPPRVAPVQVAILPISTNDSVME---EQLLPRALE-----FSDKLDQMLGGRFTFVDKQF 330

Query: 397 ------------LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                         G PL++ +G K ++   V    R TG +ED+  E V
Sbjct: 331 HMRPGDRFFYHLQKGVPLRLELGEKDLAAGTVRAVRRDTGSKEDIPFENV 380



 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E V+  ++   I+S+R+LP    Q     R E RPR   +R+ EFL ++ 
Sbjct: 101 EEPLVVRPTSETVIGHMYSKWIQSWRDLPILINQWANVMRWEKRPRL-FLRTSEFLWQEG 159

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRI 184
           ++   T E +     KM   Y RI
Sbjct: 160 HTAHATEEEAMEETLKMLEVYRRI 183


>gi|24583842|ref|NP_723726.1| Threonyl-tRNA synthetase, isoform C [Drosophila melanogaster]
 gi|28574141|ref|NP_524839.3| Threonyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|7297922|gb|AAF53167.1| Threonyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|22946308|gb|AAN10805.1| Threonyl-tRNA synthetase, isoform C [Drosophila melanogaster]
          Length = 690

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 169/409 (41%), Gaps = 44/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + +   I+ E  + G  E+  P + +A LW+ SG +  Y +
Sbjct: 304 FHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAE 363

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ 
Sbjct: 364 NMFSFEAEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLT 422

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F   PE  K S  K  + +L+  + +   S  +   + P      +  
Sbjct: 423 RVRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKYVYTIFGFSFQLVLSTRP-----DNYL 475

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             L    + +   ++   +F +P +    D             A Y    D+    + D+
Sbjct: 476 GELEQWNDAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDA 520

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVI 329
           L    + +   ++    F    +++L    ++   DG K   V +    +G++  + A++
Sbjct: 521 LKRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAIL 572

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIY--ARLSKVGCDVFWDDMGE 386
             +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++    +S+  CD      G+
Sbjct: 573 TENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDA-----GD 624

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I
Sbjct: 625 TMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELI 673


>gi|288802831|ref|ZP_06408268.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288334648|gb|EFC73086.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 649

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 150/415 (36%), Gaps = 65/415 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +   +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQELLRRLLRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDAFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +I+    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEIYAYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+  K  +       L++F   G  +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPDQVKAEFENNIDIILKVFKTFGFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W    AA  +   EK  ++  E
Sbjct: 428 RDPEDKEKYIGSD-----------------------EVWEESEAAIKEACAEKGLNARVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 LGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNSKKTPVMVHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D  +K+ A       
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAQKVKAYFDAHDV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
               DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M++E
Sbjct: 577 RSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRQQGGGEQATMTME 631


>gi|85858497|ref|YP_460699.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85721588|gb|ABC76531.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 645

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 153/374 (40%), Gaps = 55/374 (14%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           ++E  R G   +  P +   DLW +SG +D Y +E +   +   ++    P +      I
Sbjct: 292 KKEHLRRGYDMVMGPQILKVDLWKKSGHFDHY-RENMYFTEVEGQSYGIKPMNCLSHMLI 350

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +++ I+SYR+LP  ++++    R E      G++R+R+F   DA+    TPE        
Sbjct: 351 YKTKIRSYRDLPIRYFELGTVHRHEKTGVLHGLLRARQFTQDDAHIL-CTPEQLNSEIRA 409

Query: 177 M--FVSY-LRIF---HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +  FV Y ++IF   + + L + P       IG D   E    A                
Sbjct: 410 IADFVGYAMKIFGFEYEVELSTRP----DNSIGSDQDWELATSA---------------- 449

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
               EN   D+ ++ + I E   A Y    D    KL D+L    + +            
Sbjct: 450 ---LENALKDNQMTYD-INEGDGAFYGPKIDF---KLKDALKRKWQCAT----------I 492

Query: 291 GTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              ++LP     T+ GADG+ H  V +    +GA+     V+   + G   +W   +AP 
Sbjct: 493 QCDFTLPERFDLTYVGADGEKHRPVMLHRVILGAIERFMGVLIEHYGGAFPVW---LAPV 549

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  L+++           + +Y +L   G  V  D   E++G +   A     P  +++G
Sbjct: 550 QAILLSVTDRHI---PYGKTVYQQLMDAGIRVEGDFRNEKLGYKIREAQTQKIPYMLVIG 606

Query: 408 SKFVSDSKVEIKHR 421
            K ++  +V ++ R
Sbjct: 607 DKEMASGEVAVRQR 620


>gi|332653846|ref|ZP_08419590.1| threonine--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516932|gb|EGJ46537.1| threonine--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 589

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 152/394 (38%), Gaps = 41/394 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+     G   +LP G    + +    R+   + G +E+S P + +  LW  SG +D Y 
Sbjct: 205 MLRDEGPGFPFFLPKGMTLKNTLLDYWRQIHKKYGYVEISTPIILNRQLWERSGHWDHYK 264

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   + D  D A+   P +      ++ S   SYR LP    +I L  R EL     G
Sbjct: 265 QNMYTTVIDGEDFAI--KPMNCPGGMLVYASEPHSYRELPLRVGEIGLVHRHELSGALHG 322

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R R F   DA+ F +T E  K    +    +  ++   GL S  +   + P       
Sbjct: 323 LFRVRCFSQDDAHVF-MTREQMKDVIQETVRLFDEVYSTFGL-SYTIELSTMP------E 374

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + I   +  E     ++D +   I     +F        I E   A Y    D H   L 
Sbjct: 375 DHIGTVEEWEH----NQDILKNAITDMGKEF-------VINEGDGAFYGPKLDFH---LA 420

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAA 327
           DSL        R  + G I    ++        + G DG+ H  V +    +G++     
Sbjct: 421 DSL-------GRTWQCGTI-QLDSQLPERFELEYTGEDGQKHRPVMIHRVVLGSIERFIG 472

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           VI     G    W   +AP ++ ++ +        D   K   +L + G  V  D   E+
Sbjct: 473 VITEHFAGAFPAW---LAPVQVKILPVTDRAAAYADQLSK---QLDEAGYRVETDHRNEK 526

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +   A +   P  ++VG + + ++ V ++ R
Sbjct: 527 IGKKIREATMEKIPYMIVVGDRDMENNTVSVRLR 560


>gi|333029961|ref|ZP_08458022.1| threonyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332740558|gb|EGJ71040.1| threonyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 647

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 157/428 (36%), Gaps = 67/428 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +++ Q   G  ++  P + +  L+V SG Y  YGK+  + 
Sbjct: 262 KGLPMWLPKGTALRLRLEDFLKKIQKEFGYEQVITPHIGNKLLYVTSGHYAKYGKDSFQP 321

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +     +I++   +SYR LP    +    +R E      G+ R R
Sbjct: 322 IHTPEEGEEYLLKPMNCPHHCEIYKWTPRSYRELPLRLAEFGTVYRYEQSGELHGLTRVR 381

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  +  +      IF  L  ++   +              I L
Sbjct: 382 GFTQDDAHIF-CRPDQVKEEFLSVMDIIFIIFKALNFENFEAQ--------------ISL 426

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK   +  E
Sbjct: 427 RDPVNREKYIGSD-----------------------ENWEKAENAIVEACKEKGLKAKIE 463

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP   +  + GAD   H  V +     
Sbjct: 464 YGEAAFYGPKLDFMVRDALGRKWQLGTIQVDYNLPERFNLEYTGADNLKHRPVMIHRAPF 523

Query: 320 GAM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G+M R VA +IE +  GK  +W  PD VA   IS        +   D   ++   L K  
Sbjct: 524 GSMERFVAVLIEHTA-GKFPLWLTPDQVAILPIS--------ERFNDYAHEVKKYLDKND 574

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  + LE+   
Sbjct: 575 IRASVDDRNEKIGRKIRDNEVKRIPYMLIVGEKEAENREVSVRKQGEGDQGVIKLEDFAK 634

Query: 437 YASHRFSN 444
             +    N
Sbjct: 635 KLNEEVQN 642


>gi|241761215|ref|ZP_04759303.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374122|gb|EER63619.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 659

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 161/428 (37%), Gaps = 67/428 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q ++G   W P G      + A +R         E+  P L  A LW  SG +  + +
Sbjct: 262 LQQEAQGSVFWHPNGYTIWLQLEAYLRRRMKNANYKEVKTPQLMDAALWEASGHWGKFRE 321

Query: 92  EMLRLADR-----NDKAMIYG--------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D       DK ++ G        P +      IF+  I+SYR LP    +    
Sbjct: 322 NMFVVPDEIPSTDPDKPVLSGKGNLMALKPMNCPAHIQIFKQGIRSYRELPLRMLEFGCC 381

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMR 196
            R+E      G+MR R+    DA+ F    +    +  K FV+ L  I+  LG  S  ++
Sbjct: 382 HRNEAHGALHGLMRVRQLTQDDAHIFCTAEQIVTET--KDFVNLLDSIYRDLGFTSYAVK 439

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
               P   +L      L D  E  +  + + +        TD++++    +        Y
Sbjct: 440 LSLRP---ELRAGDDELWDNAENGLRSALEQVGI------TDYEELPGEGAF-------Y 483

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDH 310
               + H   L D+             +G  +  GT    Y LP  + A++   DG +  
Sbjct: 484 GPKLEFH---LTDA-------------IGRTWQCGTLQLDYVLPERLDASYVAEDGSRKR 527

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIY 369
            V +    IG       ++   H G+  +W   +AP +  +  I +  D       EK+ 
Sbjct: 528 PVMLHRAIIGTFERFIGILIEHHAGRFPLW---MAPVQAVVATIVSEADSFAESVVEKMK 584

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED- 428
           A     G  V  D   E+I  +     L   P  ++VG +   + KV I  R  G R+  
Sbjct: 585 A----AGLRVVSDIRNEKINYKIREHSLTKVPNILVVGKREAEEGKVAI--RKLGSRDQI 638

Query: 429 -MSLEEVI 435
            +S++E I
Sbjct: 639 ILSVDEAI 646


>gi|188588550|ref|YP_001919768.1| threonyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|238689641|sp|B2UYW3|SYT_CLOBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188498831|gb|ACD51967.1| threonyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 643

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/448 (20%), Positives = 167/448 (37%), Gaps = 55/448 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L T       +G+   +P G K +  +   + +E+ R 
Sbjct: 228 EYLEAIEEAKKRDHNKLGRELKLFT-TDENVGQGLPLLMPKGAKIVQTLQRWVEDEEERR 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +D Y   M  L D      ++   P        I+ +  
Sbjct: 287 GYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDEEVFALRPMTCPFQYTIYNAEQ 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + +    FR+E      G++R R+F + D +   +TPE  +  +  +    
Sbjct: 347 HSYRDLPIRYGETSTLFRNESSGEMHGLIRVRQFTLADGHLI-VTPEQLEEEFKGVLELI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   LG            I  D+S+ F    D   T+ + +        P       D
Sbjct: 406 QYLMKTLG------------IDEDISYRFSKW-DPNNTEKYIND-------PEAWNKTQD 445

Query: 242 IISLNSIVEQWTAPYAATSD---VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             ++ +I++     Y    D    +  KL         +  R +       F  +    +
Sbjct: 446 --TMRTILDHLKINYVEADDEAAFYGPKL--------DLQCRNVHGKEDTLFTVQIDFAL 495

Query: 299 SATF------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +  F      K  + K  Y+   S  IG      A++   + G    W   ++P ++ ++
Sbjct: 496 AERFDMSYIDKNGEKKRPYIIHRS-SIGCYERTLAMLIEKYAGAFPTW---LSPVQVKVL 551

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I        D  E +   L   G  +  D   E+IG +   A L   P  ++VG K  +
Sbjct: 552 PISDK---YNDYAESVVKSLRNKGVRIEADYRAEKIGYKIREARLERTPYILVVGEKEAA 608

Query: 413 DSKVEIKHRLT----GIREDMSLEEVIN 436
           +++V ++ R       I+ D   E ++N
Sbjct: 609 NNEVSVRSRKNDDEGAIKLDAFTERLLN 636


>gi|241663242|ref|YP_002981602.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240865269|gb|ACS62930.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 635

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 83/401 (20%), Positives = 152/401 (37%), Gaps = 56/401 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I ++S G   W P G      +   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEYSPGTVFWHPKGWTLWQEIEQYMRRVYRENGYQEVKGPQILDKTLWEKTGHWDKYRE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + +   +     P +      I++  IKSYR+LP  F +     R+E      G+M
Sbjct: 315 NMF-ITESEKREYALKPMNCPGHILIYKQGIKSYRDLPLRFGEFGACHRNEPSGGLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDL 206
           R R F   D + F    E    +    F + L +++   G   I  +  + P   IG + 
Sbjct: 374 RVRGFTQDDGHIF--CTEDMIQAEVTAFTTLLQKVYKDFGFTEILYKLSTRPDKRIGTEE 431

Query: 207 SHEFIVLA-DTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDV 262
           S +    A   G     C  +++    P E   +   I     +++  QW      T  V
Sbjct: 432 SWDRAEAALAEGLRASGCEFEYL----PGEGAFYGPKIEYVLKDALGRQWQ---CGTIQV 484

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGA 321
                  +LPE                        + A F G DG  H  + +    +G+
Sbjct: 485 D-----PNLPER-----------------------LDAEFVGEDGARHRPIMLHRAIVGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVF 380
           +     ++   + G    W   ++P ++++++I  +H +  +   +     L K G    
Sbjct: 517 LERFIGILIEQYAGALPTW---LSPVQVAVLSITDSHAEYAQSVVQS----LQKQGFRAV 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   E+IG +     +   P Q++VG K   +++V ++ R
Sbjct: 570 VDLRNEKIGYKIREHSVQKVPYQIVVGDKERDENQVAVRAR 610


>gi|325269899|ref|ZP_08136509.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324987872|gb|EGC19845.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 649

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 148/415 (35%), Gaps = 65/415 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +   +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQDLLRRLLRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVYAYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + PE  K  +       L++F   G  +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPEQVKTEFETNIDIILKVFKTFGFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W    AA      EK   +  E
Sbjct: 428 RDPNDKEKYIGSD-----------------------EVWEESEAAIKQACEEKGLKARVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 LGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNSKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D   K+ A L     
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAFKVKAYLDAHNV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
               DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M++E
Sbjct: 577 RSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRQQGGGEQATMTME 631


>gi|256848462|ref|ZP_05553904.1| threonyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714729|gb|EEU29708.1| threonyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 601

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 152/386 (39%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + +   G   +  P L + D +  SG ++ Y  +M    
Sbjct: 217 GLPYWLPKGAAIRRTIERYIIDREVADGYEHVYTPVLMNLDAYKTSGHWEHYRDDMFPPM 276

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ H++SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 277 DMGDGEMLELRPMNCPSHIQVYKHHLRSYRDLPLRIAELGMMHRYEKSGALSGLQRVREM 336

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R              + L D
Sbjct: 337 TLNDGHTF-VALDQIRSEFAKILKLIMSVYKDFDITDYSFR--------------LSLRD 381

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
               + + + D M     S      D +SL+    E   A Y    D+  +    +L  +
Sbjct: 382 PKNVKKYYANDEMWEKSQSMLKQAMDDLSLDYYEAEGEAAFYGPKLDIQTKT---ALGND 438

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   G +G M    A +   +
Sbjct: 439 ETMSTIQLD----FMLPERFGL----TYVGKDGQEHMPVMIHRGVVGTMERFVAYLTEIY 490

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +   D    D  +++ A L      V  D   E++G +  
Sbjct: 491 KGAFPTW---LAPEQVHIIPVS--DDKHGDYADQLGAELRAAKIRVNVDHRNEKMGYKIR 545

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  ++VG   +++  V ++
Sbjct: 546 EAQTQKVPYTLVVGDDEMANGSVSVR 571


>gi|56551661|ref|YP_162500.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260752754|ref|YP_003225647.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|73919847|sp|Q5NPH1|SYT_ZYMMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56543235|gb|AAV89389.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552117|gb|ACV75063.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 659

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 161/428 (37%), Gaps = 67/428 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q ++G   W P G      + A +R         E+  P L  A LW  SG +  + +
Sbjct: 262 LQQEAQGSVFWHPNGYTIWLQLEAYLRRRMKNANYKEVKTPQLMDAALWEASGHWGKFRE 321

Query: 92  EMLRLADR-----NDKAMIYG--------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D       DK ++ G        P +      IF+  I+SYR LP    +    
Sbjct: 322 NMFVVPDEIPSTDPDKPVLSGKGNLMALKPMNCPAHIQIFKQGIRSYRELPLRMLEFGCC 381

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMR 196
            R+E      G+MR R+    DA+ F    +    +  K FV+ L  I+  LG  S  ++
Sbjct: 382 HRNEAHGALHGLMRVRQLTQDDAHIFCTAEQIVTET--KDFVNLLDSIYRDLGFTSYAVK 439

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
               P   +L      L D  E  +  + + +        TD++++    +        Y
Sbjct: 440 LSLRP---ELRAGDDELWDNAENGLRSALEQVGI------TDYEELPGEGAF-------Y 483

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDH 310
               + H   L D+             +G  +  GT    Y LP  + A++   DG +  
Sbjct: 484 GPKLEFH---LTDA-------------IGRTWQCGTLQLDYVLPERLDASYVAEDGSRKR 527

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIY 369
            V +    IG       ++   H G+  +W   +AP +  +  I +  D       EK+ 
Sbjct: 528 PVMLHRAIIGTFERFIGILIEHHAGRFPLW---MAPVQAVVATIVSEADSFAESVVEKMK 584

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED- 428
           A     G  V  D   E+I  +     L   P  ++VG +   + KV I  R  G R+  
Sbjct: 585 A----AGLRVVSDIRNEKINYKIREHSLTKVPNILVVGKREAEEGKVAI--RKLGSRDQI 638

Query: 429 -MSLEEVI 435
            +S++E I
Sbjct: 639 ILSVDEAI 646


>gi|282916943|ref|ZP_06324701.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770747|ref|ZP_06343639.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319430|gb|EFB49782.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460894|gb|EFC07984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 645

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|270290442|ref|ZP_06196667.1| threonyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|304384676|ref|ZP_07367022.1| threonine--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|270281223|gb|EFA27056.1| threonyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|304328870|gb|EFL96090.1| threonine--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 647

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/386 (20%), Positives = 156/386 (40%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++ + G   +  P L + D +  SG +  Y ++M    
Sbjct: 263 GLPYWMPNGATIRRTIERYIIDKEVQHGYQHVYTPVLMNLDAYKTSGHWQHYREDMFPPM 322

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 323 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 382

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  +  + K+    + ++    +     R         LS+      D
Sbjct: 383 TLNDGHTF-VAPDQIQEEFKKVLQLMVEVYRDFDITDYTFR---------LSYR-----D 427

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+ +  E   A Y    DV  +    +L   
Sbjct: 428 PENTEKYFDDDEMWNHSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDVQTKT---ALGNE 484

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + GADG++H   M   G +  M    A +   +
Sbjct: 485 ETLSTIQLD----FMLPKQFDL----HYVGADGEEHRPVMIHRGLVSTMERFTAYLIEMY 536

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++++I +K  D +  +  +K+  +++     V  D   E++G +  
Sbjct: 537 KGAFPTW---LAPKQVTIIPVK--DDLHGEYADKLREQMADQDIRVEVDHRNEKMGYKIR 591

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  ++VG   +  + V ++
Sbjct: 592 EAQTQKIPYILVVGDNEMDSNAVSVR 617


>gi|124008543|ref|ZP_01693235.1| prolyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123985917|gb|EAY25774.1| prolyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 498

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/325 (19%), Positives = 133/325 (40%), Gaps = 65/325 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E V+   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETVIWSSYKKWIQSYRDLPILLNQWANVVRWEMRTRI-FLRTSEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           +    T   +K       +  + ++                                   
Sbjct: 174 H----TAHATKEEAEAETIQMMNVYAEF-------------------------------- 197

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              +++FM  P+         I  + S  E+    +A   + +     ++L ++     +
Sbjct: 198 ---AENFMAVPV---------IKGIKSESER----FAGADETY---CIEALMQD----GK 234

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F   + K+  V   S+G+ + R++ A+I +  D  G++ 
Sbjct: 235 ALQAGTSHFLGQNFAKAFDVKFLNKENKEELVWGTSWGV-STRLMGALIMAHSDDHGLVL 293

Query: 341 PDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD 396
           P  +AP ++ ++ I   D+          +I   L  VG  V +D+    + G +FA  +
Sbjct: 294 PPKLAPIQVVIVPIYKGDEQFAAVSAKANEIKKALEAVGVSVKYDNRDTYKPGFKFADWE 353

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           + G P+++ +G++ + +  VE+  R
Sbjct: 354 MKGVPVRLALGARDLENGTVEMARR 378


>gi|300856979|ref|YP_003781963.1| prolyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300437094|gb|ADK16861.1| prolyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 476

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      +   +GK  YV   S+G+   R++ A+I    D  G+
Sbjct: 223 GKALQAGTSHYLGQNFAKSFGMQYSDKEGKLQYVYQTSWGV-TTRLLGAIIMVHGDDNGL 281

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ I  H +   D   ++  R++K    V  DD  +  G +F+  ++ 
Sbjct: 282 VVPPRIAPTQVIIVPIAQHKEGVLDKANELKDRIAKFA-RVKLDDSDKMAGWKFSEYEMK 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P+++ VG K +  ++V +  R +G
Sbjct: 341 GVPIRLEVGPKDIEKNQVVLVRRDSG 366


>gi|88195489|ref|YP_500293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|123003455|sp|Q2FXP7|SYT_STAA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87203047|gb|ABD30857.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|329728437|gb|EGG64874.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 645

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|78066086|ref|YP_368855.1| threonyl-tRNA synthetase [Burkholderia sp. 383]
 gi|123756187|sp|Q39H55|SYT_BURS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77966831|gb|ABB08211.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           sp. 383]
          Length = 635

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H +V    F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGHVQV----FKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHS--YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +    S  +N + +S   ++   G   I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEDQFISESIAFNTLAMS---VYKDFGFDHIDIKLSLRPEQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWDRAEQGLRDALTACGLTWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y    S+       +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEYVADDSS-------RRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G    W   +APF+  ++NI A  Q   +  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPAW---LAPFQAVVLNI-AESQA--EYAQSLAQSLQKQGVRVTADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|225386498|ref|ZP_03756262.1| hypothetical protein CLOSTASPAR_00245 [Clostridium asparagiforme
           DSM 15981]
 gi|225047417|gb|EEG57663.1| hypothetical protein CLOSTASPAR_00245 [Clostridium asparagiforme
           DSM 15981]
          Length = 499

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      F   D    YV   S+G+   R++ A+I    D  G+
Sbjct: 245 GKALQSGTSHNFGDGFAKAFEIQFTDKDNTLKYVHQTSWGM-TTRMIGAIIMVHGDDNGL 303

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +I ++ ++       D   ++  RL++ G  V  DD  +  G +FA  ++ 
Sbjct: 304 VLPPRIAPIQIMVVPVQQQKPGVLDKAFELKERLTRAGFSVKVDDSEKSPGWKFADCEMR 363

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G PL+V +G K +  ++  +  R    +  +SL+E+ + A
Sbjct: 364 GIPLRVEIGPKDMEKNQAVLVRRDNHEKTFISLDELESKA 403


>gi|15924673|ref|NP_372207.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927261|ref|NP_374794.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|156980000|ref|YP_001442259.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006467|ref|ZP_05145068.2| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|54039693|sp|P67585|SYT_STAAN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|54042050|sp|P67584|SYT_STAAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225504|sp|A7X3A6|SYT_STAA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13701479|dbj|BAB42773.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247455|dbj|BAB57845.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722135|dbj|BAF78552.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu3]
          Length = 645

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|116512847|ref|YP_811754.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactococcus
           lactis subsp. cremoris SK11]
 gi|122939966|sp|Q02WN1|SYT_LACLS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116108501|gb|ABJ73641.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 646

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 168/412 (40%), Gaps = 37/412 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WLP G      +   + +++ + G   +  P + + + + +SG +  Y ++M    
Sbjct: 262 GTAYWLPAGATIRRIIERFVVDQEVKNGYQHVITPVMMNLNTYKQSGHWQHYHEDMYPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D + M   P +      I++ H+ SYR LP    +  +  R E      G+ R RE 
Sbjct: 322 DMGDGEEMELRPMNCPSHIAIYKHHVHSYRELPIRIAEFGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  E  +  ++K+    + ++   G+     R         LS+      D
Sbjct: 382 TLNDGHTF-VMLEQVQEEFSKILQLIMDMYRDFGINDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T  +   D M     +      D + L+ +  E   A Y    D+   ++  +L   
Sbjct: 427 PKDTVKYFPDDEMWEKSQAMLKATMDDMKLDYVEAEGEAAFYGPKLDI---QVKTALGNE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++  +   F   Y         GADG+ H   M   G+ +   R +A +IE  
Sbjct: 484 ETLSTIQLDFLNPENFDISYV--------GADGEKHRPVMIHRGVISTLERFIAYLIEVY 535

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              KG  +P  +AP + ++I +  ++++  D   KI   L   G  V  D+  E++G + 
Sbjct: 536 ---KG-AFPTWLAPTQATIIPV--NNEIHADYAWKIQRELQDKGFRVVVDEANEKMGWKI 589

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +     P Q+++G +  ++  V I+   +   E +  E+ I   S   +N
Sbjct: 590 RQSQTHKIPYQIVIGDQEQANGTVNIRRYGSKETEVIPFEDFIEKISADVAN 641


>gi|315659856|ref|ZP_07912715.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315495144|gb|EFU83480.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 638

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 16  RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           R+AE  +H+ +   L+  M  + + G+  +L  GQ   + +   +RE Q +    E+  P
Sbjct: 237 REAEARNHRKLGKQLKLFMFSEEAPGMPFYLSNGQFVRNQMENFLREIQLKNDYDEVRTP 296

Query: 73  TLQSADLWVESGRYDSYGKEM-LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLP 129
            + +  LW ESG +D Y + M     D ND A+  +  P H      IF++ ++SY++LP
Sbjct: 297 LMMNQKLWEESGHWDHYHENMYFTKVDENDYALKPMNCPGH----MLIFKNELRSYKDLP 352

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
               +     R E      G++R R F   DA+ F
Sbjct: 353 LRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIF 387


>gi|50302871|ref|XP_451373.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640504|emb|CAH02961.1| KLLA0A08448p [Kluyveromyces lactis]
          Length = 672

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 136/345 (39%), Gaps = 70/345 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+SYR+LP    Q     R E +     +R+REFL ++ 
Sbjct: 268 DEPIAIRPTSETVMYPYYAKWIQSYRDLPIKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 327

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT E ++    ++   Y  ++    L ++P                +V     E +
Sbjct: 328 HTAHLTKEAAEEEVMQILDFYAGVYEE--LLAVP----------------VVKGRKTEKE 369

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   DF                               T + +       +P+    + R
Sbjct: 370 KFAGGDF-----------------------------TTTCEGY-------IPQ----TGR 389

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKG 337
           GI+     + G  +S   + + +   G +H   +    S+G+ + RV+  ++    D KG
Sbjct: 390 GIQGATSHHLGQNFSKMFNISVENPLGSEHPKIFAYQNSWGL-STRVIGVMVMIHSDNKG 448

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIY-------ARLSKVGCDVFWD-DMGEQIG 389
           ++ P  V+ F+  ++ +    +   +   KI+       +RL K G   F D +     G
Sbjct: 449 LVIPPRVSQFQSVVLPVGITTKTSDEQRAKIHENARAIESRLKKAGIRAFGDYNDNYTPG 508

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +F+  +L G PL++ +G K +   +V    R  G +  +SL ++
Sbjct: 509 WKFSQYELKGIPLRIELGPKDLEKEQVTCVRRNDGKKIVVSLNDL 553


>gi|291563461|emb|CBL42277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SS3/4]
          Length = 646

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 163/427 (38%), Gaps = 51/427 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+     G   +LP G    + +    RE   + G +E+S P + +  LW  SG +D Y 
Sbjct: 254 MMSDAGPGFPFFLPKGMVLKNTLLDYWREIHKKAGYVEISTPIILNRSLWETSGHWDHYK 313

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +      ++ S  +SYR+LP    ++ +  R E   +  G
Sbjct: 314 NNMYTTIIDGEDYAI--KPMNCPGGVLVYASEPRSYRDLPLRMGELGIVHRHEKSGQLHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           +MR R F   DA+ F +TPE  +     +     +++   G K                 
Sbjct: 372 LMRVRCFTQDDAHIF-MTPEQIRDEIKNVAGLINQVYSLFGFKY---------------- 414

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
             + L+   E  +   +D+ +    S     DD+     I E   A Y    D H   L 
Sbjct: 415 -HVELSTRPEDSMGSDEDW-ELATSSLQGALDDLGLDYVINEGDGAFYGPKIDFH---LV 469

Query: 269 DSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-R 323
           D++        R  + G I   F    ++ L     + GADG+ H  + +     G++ R
Sbjct: 470 DAI-------GRTWQCGTIQLDFQLPQRFEL----EYIGADGEKHRPIMIHRVCFGSIER 518

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE         +P  +AP ++ ++ I    +   +  + + A L         D 
Sbjct: 519 FIGILIEHFAGA----FPTWLAPVQVKVLPIS---EKYEEYAKSVKAALDAADIRAEIDL 571

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+IG +   A     P  ++VG K  +D  V ++ R  G      L   I       +
Sbjct: 572 RSEKIGYKIREAQGQKIPYMLVVGQKEQADGTVSVRSRFKGDEGAEDLNVFIANIKAEIA 631

Query: 444 N--NRPV 448
              NRPV
Sbjct: 632 GRVNRPV 638


>gi|229823364|ref|ZP_04449433.1| hypothetical protein GCWU000282_00662 [Catonella morbi ATCC 51271]
 gi|229787139|gb|EEP23253.1| hypothetical protein GCWU000282_00662 [Catonella morbi ATCC 51271]
          Length = 479

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++      +   D +  Y    S+G+ + R++ A+I +  D KG+
Sbjct: 215 GKAVQAGTSHYMGTKFAEAFDIRYLNTDNEHVYAHTSSFGV-STRLIGAMIMTHGDDKGL 273

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P +VAP ++  + +     +    D   ++ A+L   G     DD     G +F   +
Sbjct: 274 VLPPAVAPTQVVFVPVGPWQKNPAILDKIHELQAQLKAAGIRCRVDDSNNSPGFKFNEWE 333

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L G P+++  G + + +++V +K R
Sbjct: 334 LRGVPVRIECGPRDLENAQVMMKAR 358


>gi|329113775|ref|ZP_08242547.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696901|gb|EGE48570.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 640

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 6/174 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G   W P G      + A +R  Q     +E++ P +    LW  SG ++ +G+ M  
Sbjct: 258 APGAVFWHPNGWTLFQTLLAYLRARQQAENYVEINTPDIMDLSLWQASGHWEKFGENMF- 316

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             +   +     P +      +FR  +KSYR+LP    +     R E      G+MR R 
Sbjct: 317 TTETEGRTYALKPMNCPGGVQVFRHGLKSYRDLPLRMAEFGKVHRFEPSGALHGLMRVRA 376

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           F   DA+ F  TPE  +    ++    L I+   G  ++ ++    P   +G D
Sbjct: 377 FTQDDAHIF-CTPEQMEAETQRICHLVLSIYKDFGFNNVRIKFSDRPEKRVGSD 429


>gi|301300332|ref|ZP_07206537.1| threonine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852068|gb|EFK79747.1| threonine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 649

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 153/386 (39%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L +  L+ +SG +D Y ++M    
Sbjct: 265 GLPYWMPNGATIRRVIERYIIDKEVAWGFQHVYTPVLANLSLYKQSGHWDHYREDMFPPM 324

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      ++  H +SYR LP    ++ +  R E      G+ R RE 
Sbjct: 325 DMGDGEMLELRPMNCPSHIQVYNHHKRSYRELPLRIAELGMMHRYEKSGALTGLSRVREM 384

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D + F + P+  +     +      +++   +     R         LS+      D
Sbjct: 385 TLNDGHDF-IEPDHIEDEIKTLIKLMTEVYNDFDITDYRFR---------LSYR-----D 429

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S+     D + L     E   A Y    DV  +    +L   
Sbjct: 430 PKNTEKYFDDDEMWEKSQSKLKAAMDDMGLEYFEAEGEAAFYGPKIDVQTKT---ALGGE 486

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + GADG++H   M   GI   M    A +   +
Sbjct: 487 ETLSTIQLD----FLLPERFDL----KYIGADGEEHRPVMVHRGIVSTMERFTAYLTEMY 538

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +K  + +  D    + ++L   G  V  DD  E++G +  
Sbjct: 539 KGAFPTW---LAPHQVDIIPVK--NDLHMDYVNDLSSKLRAHGIRVTVDDRNEKMGYKIR 593

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A +   P  +++G + VS+  V ++
Sbjct: 594 QAQVNKIPYTLVIGDEEVSNGTVTVR 619


>gi|50121350|ref|YP_050517.1| threonyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|73919790|sp|Q6D4G8|SYT_ERWCT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49611876|emb|CAG75325.1| threonyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 642

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 148/409 (36%), Gaps = 42/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    +W ++G +D+Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKSYQYQEVKGPFMMDRVMWEKTGHWDNYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P     S E 
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDEM 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+          +      P E   +   I                       L D 
Sbjct: 434 WDRAEADLAAALTENNIEFAYQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +SLP  +SA++ G   +     M    I G+M     
Sbjct: 474 LD-------RAWQCGTV---QLDFSLPGRLSASYVGESNERQVPVMIHRAILGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++     G    +P  +AP ++ +INI        D   ++  +L + G  V  D   E+
Sbjct: 524 ILTEEFAG---FFPTWLAPVQVVIINITDSQS---DYVNELTQKLQEAGIRVKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +     L   P  ++ G K V   KV ++ R       + + EVI+
Sbjct: 578 IGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVSEVIS 626


>gi|21283355|ref|NP_646443.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483925|ref|YP_041149.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486509|ref|YP_043730.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650554|ref|YP_186567.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161367|ref|YP_494324.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|148268163|ref|YP_001247106.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394230|ref|YP_001316905.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221788|ref|YP_001332610.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509896|ref|YP_001575555.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142567|ref|ZP_03567060.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317174|ref|ZP_04840387.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732334|ref|ZP_04866499.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734533|ref|ZP_04868698.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257425798|ref|ZP_05602222.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428464|ref|ZP_05604862.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431098|ref|ZP_05607475.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433781|ref|ZP_05610139.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436697|ref|ZP_05612741.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257794068|ref|ZP_05643047.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258415772|ref|ZP_05682043.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258421991|ref|ZP_05684911.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258424099|ref|ZP_05686981.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|258438251|ref|ZP_05689535.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443709|ref|ZP_05692048.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258445920|ref|ZP_05694096.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448399|ref|ZP_05696516.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258451803|ref|ZP_05699825.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258454120|ref|ZP_05702091.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|269203301|ref|YP_003282570.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893178|ref|ZP_06301412.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904254|ref|ZP_06312142.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282908994|ref|ZP_06316812.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911310|ref|ZP_06319112.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914479|ref|ZP_06322265.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282919448|ref|ZP_06327183.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920223|ref|ZP_06327948.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924825|ref|ZP_06332491.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282927813|ref|ZP_06335424.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283958434|ref|ZP_06375885.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024731|ref|ZP_06379129.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503557|ref|ZP_06667404.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510572|ref|ZP_06669277.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293537114|ref|ZP_06671794.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848704|ref|ZP_06789450.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295405993|ref|ZP_06815801.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428254|ref|ZP_06820883.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296274890|ref|ZP_06857397.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207604|ref|ZP_06924039.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245081|ref|ZP_06928958.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297590783|ref|ZP_06949421.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911686|ref|ZP_07129130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380726|ref|ZP_07363395.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|38258392|sp|Q8NW68|SYT_STAAW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749381|sp|Q6G8P3|SYT_STAAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749410|sp|Q6GG23|SYT_STAAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71153575|sp|Q5HF90|SYT_STAAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123735974|sp|Q2FG54|SYT_STAA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|172048941|sp|A6QHL6|SYT_STAAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083625|sp|A6U2F0|SYT_STAA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083626|sp|A5ITK7|SYT_STAA9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083627|sp|A8Z2J8|SYT_STAAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|38492559|pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492560|pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492561|pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|38492562|pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|21204795|dbj|BAB95491.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242054|emb|CAG40753.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244952|emb|CAG43413.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284740|gb|AAW36834.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127341|gb|ABD21855.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|147741232|gb|ABQ49530.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946682|gb|ABR52618.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374588|dbj|BAF67848.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368705|gb|ABX29676.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723934|gb|EES92663.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727474|gb|EES96203.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271492|gb|EEV03638.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275305|gb|EEV06792.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278046|gb|EEV08694.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281874|gb|EEV12011.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284048|gb|EEV14171.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257788040|gb|EEV26380.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257839365|gb|EEV63838.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257842035|gb|EEV66464.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257845720|gb|EEV69752.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257848295|gb|EEV72286.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851115|gb|EEV75058.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257855162|gb|EEV78101.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858367|gb|EEV81252.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257860515|gb|EEV83341.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257863572|gb|EEV86329.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|262075591|gb|ACY11564.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941163|emb|CBI49550.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313191|gb|EFB43587.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317258|gb|EFB47632.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282321660|gb|EFB51985.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325005|gb|EFB55315.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327258|gb|EFB57553.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282590323|gb|EFB95402.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594571|gb|EFB99556.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595872|gb|EFC00836.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764496|gb|EFC04622.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283790583|gb|EFC29400.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817366|gb|ADC37853.1| Threonyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290919959|gb|EFD97027.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095223|gb|EFE25488.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466463|gb|EFF08984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824730|gb|EFG41153.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968990|gb|EFG45011.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295127654|gb|EFG57291.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887621|gb|EFH26519.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178161|gb|EFH37409.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297575669|gb|EFH94385.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300887107|gb|EFK82308.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333348|gb|ADL23541.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751509|gb|ADL65686.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340725|gb|EFM06656.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312437859|gb|ADQ76930.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830061|emb|CBX34903.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130684|gb|EFT86670.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195587|gb|EFU25974.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198621|gb|EFU28949.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140439|gb|EFW32293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143977|gb|EFW35746.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314355|gb|AEB88768.1| Threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727674|gb|EGG64130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 645

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|225181661|ref|ZP_03735101.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167642|gb|EEG76453.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 636

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 157/409 (38%), Gaps = 47/409 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G    + +    REE  + G  E+  P + +  LW  SG +D Y +E +     +++ 
Sbjct: 268 PRGMIIRNALEEFWREEHRKAGYDEIKTPIILNRVLWERSGHWDHY-QENMYFTKIDEQD 326

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      ++++ + SYR+LP    ++ L  R EL     G+MR R F   DA+ 
Sbjct: 327 FSVKPMNCPGSMLVYKTKMHSYRDLPVRMGELGLVHRHELSGTLHGMMRVRAFTQDDAHI 386

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F + P   K    K+     R+++  G     +   + P     S E   +A     +V 
Sbjct: 387 F-MLPSQIKEEVAKVIELTDRVYNVFGF-DYHVELSTKPEKAMGSDEMWDVATNALREVL 444

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +  M F I   +  F                Y    D H   L DS+        R  
Sbjct: 445 EERG-MQFVINEGDGAF----------------YGPKIDFH---LQDSI-------GRTW 477

Query: 283 EVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGI 338
           + G I   F    K+ +     + G DG+ H   +    I G++    AV+     G   
Sbjct: 478 QCGTIQLDFQMPEKFDI----HYVGEDGQKHRPAVIHRVIYGSIERFMAVLIEHFAGAFP 533

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +W   +AP ++ ++ I   H Q  +   E    R  + G     D   E+IG +   A +
Sbjct: 534 VW---LAPQQVVVLPITDKHHQYAQTLVE----RFREAGVRAEADVRNEKIGYKIREAQV 586

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              P  ++VG K +   +V ++ R  G    M ++  +   +   +N +
Sbjct: 587 QKVPYMLVVGDKEMEAGQVSVRERAAGDVGSMEVDAFLAKITAEIANKQ 635


>gi|289549510|ref|YP_003470414.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289179042|gb|ADC86287.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 638

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 16  RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           R+AE  +H+ +   L+  M  + + G+  +L  GQ   + +   +RE Q +    E+  P
Sbjct: 237 REAEARNHRKLGKQLKLFMFSEEAPGMPFYLSNGQFVRNQMENFLREIQLKNDYDEVRTP 296

Query: 73  TLQSADLWVESGRYDSYGKEM-LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLP 129
            + +  LW ESG +D Y + M     D ND A+  +  P H      IF++ ++SY++LP
Sbjct: 297 LMMNQKLWEESGHWDHYHENMYFTKVDENDYALKPMNCPGH----MLIFKNELRSYKDLP 352

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
               +     R E      G++R R F   DA+ F
Sbjct: 353 LRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIF 387


>gi|282906079|ref|ZP_06313934.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282331371|gb|EFB60885.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 645

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|268608298|ref|ZP_06142025.1| threonyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 646

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 6/181 (3%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A++  HK + +     M    + G+  WLP G K  + +    R      G  E+S P
Sbjct: 237 EEAKLRDHKKLGKEQALFMFDHTAPGMPYWLPRGWKLFNALLEYWRGVHEDHGYTEISGP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L   +LWV SG +D Y   M  + A+ +++     P +      ++ +  +SY+ LP  
Sbjct: 297 VLSKKELWVTSGHWDHYQDGMFVIPAEEDNEVYCAKPMNCPNAIKVYMNRQRSYKELPLK 356

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F Q+ +  R E      G+ R ++F   DA+   +T E      N +      I++  GL
Sbjct: 357 FNQVDVIHRKEKSGELNGLFRVQQFRQDDAHIL-VTEEQIASEINDIMDIATEIYNTFGL 415

Query: 191 K 191
           +
Sbjct: 416 E 416


>gi|154148459|ref|YP_001406198.1| threonyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|171769701|sp|A7I107|SYT_CAMHC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|153804468|gb|ABS51475.1| threonyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 609

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL+E   RD  I  +++ L T    Q   G+  WLP G +    +  I+     R G
Sbjct: 204 YLRILEEAKKRDHRIIGNEMKLFT-FDDQIGAGLPVWLPNGARMRSKLEKILFGVHRRRG 262

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  AD W  SG Y +Y KE +     +++     P +      +++S I+SY
Sbjct: 263 YEPVRGPEILKADAWKISGHYTNY-KENMYFTKIDEQEYGIKPMNCVGHIKVYQSEIRSY 321

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           R+LP  F++  +  R E      G+ R REF   DA+ F
Sbjct: 322 RDLPLKFFEYGVVHRHEKSGVMHGLFRVREFTQDDAHIF 360


>gi|225374732|ref|ZP_03751953.1| hypothetical protein ROSEINA2194_00352 [Roseburia inulinivorans DSM
           16841]
 gi|225213424|gb|EEG95778.1| hypothetical protein ROSEINA2194_00352 [Roseburia inulinivorans DSM
           16841]
          Length = 594

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 152/403 (37%), Gaps = 58/403 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I+ ++ + G + +  P + + +L+  SG +D Y   M   
Sbjct: 204 RGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPCVGTVNLYKTSGHWDHYKDNMFPA 263

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ + + SY++LP    +I   FR E      G+ R R F
Sbjct: 264 MEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIGEIAHDFRFEASGTLKGIERGRHF 323

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ F +TPE  +  ++++                           DL   F    D
Sbjct: 324 CQNDAHLF-VTPEQIESEFSQVV--------------------------DLI--FDTYKD 354

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              T   C     D   P++   + D        E W     A   V ++   D   E  
Sbjct: 355 FNITDYRCVLSLRD---PADKVKYHDDD------EMWNTAENALRKVLDDLGIDYTEEIG 405

Query: 276 RVSARG--IEVGHIFYFGTKYSL-----------PMSATFKGADG-KDHYVQMGSYGIGA 321
             +  G  ++V      G +Y+L             + T+   DG K   V +    +G+
Sbjct: 406 EAAFYGPKLDVNVKPAIGNEYTLSTCQLDFCLPEKFNLTYIDKDGTKKTPVVLHRAILGS 465

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +    A I     G   +W   +AP +  +I +K  D+       ++ + L + G  V  
Sbjct: 466 LDRFMAYILEETKGNLPLW---LAPVQARIIPVKNEDEELNAYSHELLSYLDENGIRVEI 522

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           D+  E++G +   A +   P  +I+G   V D  V   +RL G
Sbjct: 523 DERAEKLGYRVRAAQVEKVPYLIILGKNEVKDGTV--SYRLHG 563


>gi|328866339|gb|EGG14724.1| threonyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 706

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H +S G   +LP G +  + +   IR E +R G  E+  PT+ S  LW +SG +  Y + 
Sbjct: 327 HPYSPGCTFFLPHGTRIYNKLVEFIRFEYHRRGFSEVITPTMFSQSLWEQSGHWAKYSEN 386

Query: 93  MLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           M  +  D ++ +M   P +      +F S  +SYR LP  F    +  R+E+     G+ 
Sbjct: 387 MFPVKCDNSNYSM--KPMNCPGHCLMFASRSRSYRELPIRFADFGVLHRNEMAGALTGLT 444

Query: 151 RSREFLMKDAYSF 163
           R R+F   DA+ F
Sbjct: 445 RVRKFQQDDAHIF 457


>gi|301320495|gb|ADK69138.1| proline--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 474

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 157/392 (40%), Gaps = 73/392 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIEGFSPEIAT 94

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +      + ++ +   PT E VM D F + I SYR+LP  + Q    +++    RP    
Sbjct: 95  VTRVGQKKLEENLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRP---F 151

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++          SYN+     L+I +               I    + E
Sbjct: 152 LRTSEFLWQEGHTV-------HSSYNEAENFCLKILN---------------IYEKFAKE 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            ++L       V C K        +E   F                 A   D +      
Sbjct: 190 ILLLP------VICGK-------KTEKEKF-----------------AGAKDTYT----- 214

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E+     + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I
Sbjct: 215 --IESLMFDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALI 271

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D  G++ P  ++P +I +I IK  +Q+     E I  +LS    DV  D+  +  G
Sbjct: 272 MTHSDDNGLVLPSKISPIQIQIIQIKNTEQI-DQVVENIKDKLSDYRIDV--DNSDKSFG 328

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + + A++ G P+++ +G + + ++++ I  R
Sbjct: 329 FKISEAEIKGIPIRIEIGPRDLENNQITISRR 360


>gi|331701570|ref|YP_004398529.1| threonyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128913|gb|AEB73466.1| threonyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 648

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 152/389 (39%), Gaps = 41/389 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+ +SG +D Y ++M    
Sbjct: 263 GLPYWMPNGATIRRTIERYIVDKEVANGYQHVYTPVLANLDLYKQSGHWDHYREDMFPPM 322

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D + +   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 323 DMGDGEELELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 382

Query: 156 LMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            + D ++F   D   E  K+  N M    + ++H   +     R         LS+    
Sbjct: 383 TLNDGHTFVALDQIQEEFKNILNLM----VEVYHDFDINDYTFR---------LSYR--- 426

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSL 271
             D   T+ +   D M     +      D + L+ +  E   A Y    DV  +    +L
Sbjct: 427 --DPKNTEKYFDDDEMWTRAQTMLKGAMDEMGLDYVEAEGEAAFYGPKLDVQTKT---AL 481

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
              + +S   ++    F    ++ L     + G DGK H   M   G +  M    A + 
Sbjct: 482 GNEETLSTIQLD----FMLPERFDL----HYIGEDGKQHRPVMIHRGLVSTMERFVAYLT 533

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G    W   +AP ++ +I +     +  D  +KI  +L  +      D   E++G 
Sbjct: 534 EIYKGAFPTW---LAPHQVKIIPVSQDKHL--DYAKKINDQLRALKIRSSVDTRAEKMGY 588

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               A     P  ++VG + VS + V ++
Sbjct: 589 LIRDAQTHKIPYTLVVGDEEVSGNSVSVR 617


>gi|325297765|ref|YP_004257682.1| Prolyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324317318|gb|ADY35209.1| Prolyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 496

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 86/166 (51%), Gaps = 5/166 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DA-CEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  +D+  +  DA  E I  +L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNDEQLKLIDAKVEGIVNKLRAMGVTVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +L G P+++ +G + + ++ +E+  R T  +E  S + +  Y  +
Sbjct: 355 YELKGVPVRLAMGGRDLENNTIELMRRDTLEKETRSCDGIEEYVKN 400



 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++   +++ I SYR+LP    Q     R E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVVRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E ++    KM   Y
Sbjct: 173 WQEGHTAHATREEAEAEAQKMLHVY 197


>gi|171318442|ref|ZP_02907597.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171096356|gb|EDT41258.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 635

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++N + +S   ++   G + I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQFIAESIAFNTLAMS---VYKDFGFEHIDIKLSLRPEQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWDRAEQGLRDALTACGLSWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G    W   +APF+  ++NI A  QV  +    +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPAW---LAPFQAVVLNI-AESQV--EYAHSLTQTLQKQGVRVAGDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|115351412|ref|YP_773251.1| threonyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323391|sp|Q0BG06|SYT_BURCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115281400|gb|ABI86917.1| Ser-tRNA(Thr) hydrolase [Burkholderia ambifaria AMMD]
          Length = 635

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++N + +S   ++   G + I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQFIAESIAFNTLAMS---VYKDFGFEHIDIKLSLRPEQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWDRAEQGLRDALTACGLSWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G    W   +APF+  ++NI A  QV  +    +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPAW---LAPFQAVVLNI-AESQV--EYAHSLTQTLQKQGVRVAGDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|224438525|ref|ZP_03659445.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313144952|ref|ZP_07807145.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313129983|gb|EFR47600.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 603

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 3/162 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      ++ L T    +   G+  WLP G +   N+  ++    N  G
Sbjct: 198 YLFAIEEAKKRDHRKLGQEMGLFT-FDEEIGAGLPIWLPKGARLRQNLERLLTIALNERG 256

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W +SG YD+Y KE +     +++     P +      +++S  +SY
Sbjct: 257 YEPVRGPEILKSDVWKKSGHYDNY-KENMYFTTIDEQEYGIKPMNCVGHIKVYQSSPRSY 315

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           R LP  FY+  +  R E      G++R REF   DA+ F  T
Sbjct: 316 RELPLRFYEYGIVHRHEKSGVLHGLLRVREFTQDDAHIFCQT 357


>gi|324505892|gb|ADY42525.1| Threonyl-tRNA synthetase [Ascaris suum]
          Length = 706

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/419 (20%), Positives = 165/419 (39%), Gaps = 60/419 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   W P G    + +   +R +  + G  E+  P + ++ LW +SG +  Y 
Sbjct: 314 FFHPLSPGAAFWYPKGAHIYNTLCNFMRNQYRKRGFTEVISPNMFNSKLWEQSGHWQHYS 373

Query: 91  KEMLRLADRNDKAMIYG------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             M ++    +   ++G      P H  + + + R+H      LP  +    +  R+EL 
Sbjct: 374 DGMFKIEVEKE---LFGLKPMNCPGHCLMYSHMPRTH----NELPMRYADFGVLHRNELS 426

Query: 145 PRF-GVMRSREFLMKDAYSF------DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
               G+ R R F   DA+ F      +   +G     N ++V       +L L + P   
Sbjct: 427 GALTGLTRVRRFQQDDAHIFCRPDQINSEIKGCIDFINYVYVDVFGFTFKLNLSTRP--- 483

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           E G +G       I   D  E ++  + D    P      D               A Y 
Sbjct: 484 EEGFLGD------IATWDHAEAELKKALDESGHPWELNPGD--------------GAFYG 523

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              DV    + D+L    + +   ++    F    ++ L   A F   + +   V +   
Sbjct: 524 PKIDV---TIQDALKRYHQCATIQLD----FQLPQRFDL---AYFDENNERKRPVMVHRA 573

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++  + A++  +  GK   WP  ++P +  +I +    +V     +++  +L + G 
Sbjct: 574 LLGSIERMTAILTENFGGK---WPFWLSPRQAKVITVHESQRV---YAKEVQKKLYEAGF 627

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +V +D+M  + +  Q   A L  F   ++VG K   +  V ++ R   +R ++ L+++I
Sbjct: 628 EVEFDEMCSDTLNKQIRNAQLAQFNFILVVGPKEAQNGTVNVRTRDNAVRGEVKLDDLI 686


>gi|32490830|ref|NP_871084.1| hypothetical protein WGLp081 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340448|sp|Q8D3C0|SYT_WIGBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25166036|dbj|BAC24227.1| thrS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 636

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 159/409 (38%), Gaps = 42/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I+++S G+  W   G      +   IR++  +    E+  P +   DLW  SG  D+Y  
Sbjct: 255 IYENSPGMVFWHHNGWIIFRILEKFIRKKLKKFYYQEVKTPCIIDHDLWRLSGHLDNYKN 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF+  I+SY+ LPF   +     R+E      G+M
Sbjct: 315 YMFHTNSENKQYCI-KPMNCPAHVLIFKKKIRSYKELPFRISEFGSCHRNEPSGSLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F +  +      + + + Y  ++   G K I ++  + P   IG D  
Sbjct: 374 RIRNFTQDDAHIFCMHDQILSEVSSCIKMIY-EVYSCFGFKKILVKLSTRPENRIGSD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E Q       ++  +      F   I LN       A Y    +     L
Sbjct: 431 ----EIWDFAEKQ-------LELSLKKNKILFK--IDLNE-----GAFYGPKIEF---TL 469

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            DSL  N++     I++        K     +      + K + V +    +G+M     
Sbjct: 470 LDSL--NRKWQCGTIQLD--LCLANKLQ---AYYINNKNEKTNPVIIHRAILGSMERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +I     GK  +W   ++P ++ +IN+   DQ+  D  +KI     +    +  D   E+
Sbjct: 523 IITEEFSGKYPLW---ISPIQVGVINVSV-DQI--DYVKKITKFFLQKKIRIISDLRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           I  +     L   P  +I G K +  + + ++++     +  SLE+  N
Sbjct: 577 ISFKIREYTLRFIPYIIICGKKEMESNSISVRNKYGKQLKYSSLEKFYN 625


>gi|262052254|ref|ZP_06024459.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
 gi|259159855|gb|EEW44894.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
          Length = 645

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDRYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|269963856|ref|ZP_06178168.1| threonyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269831343|gb|EEZ85490.1| threonyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 655

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 160/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + +  G  E+  P +    LW  SG +D Y  
Sbjct: 270 MQQEAPGMVFWHHNGWSVFRDLEVFIRSKLDEYGYQEVKGPLMMDRVLWERSGHWDKYAD 329

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 330 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 388

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 389 RVRGFTQDDAHIFCTESQIQEEVTNCIKMVY-DTYQTFGFDNIVVKLSTRPEKRVGSD-- 445

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + M+ P                I E   A Y    +     L
Sbjct: 446 ----EIWDQSEEALKQSLESMEIPY--------------EIQEGEGAFYGPKIEF---TL 484

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 485 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 534

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  L+NI        +  +++  +L K G     D  
Sbjct: 535 FIGILIEEYAG---FFPTWLAPEQAILMNITDKQS---EYVQEVVQKLQKSGIRAKADLR 588

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+
Sbjct: 589 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISS 648

Query: 445 NR 446
            +
Sbjct: 649 RK 650


>gi|40062682|gb|AAR37595.1| threonyl-tRNA synthetase [uncultured marine bacterium 314]
          Length = 638

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/415 (20%), Positives = 163/415 (39%), Gaps = 47/415 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + S G   W   G      +   +R +Q + G  E++ P +   +LW +SG ++ +G+ M
Sbjct: 258 EESPGAVFWHHKGWTLFQTLVGYMRLKQKKAGYKEINTPEILDKNLWEQSGHWEKFGENM 317

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                 + K     P +      IF   +KSYR+LP    +     R E      G++R 
Sbjct: 318 FTSETPDKKTFAIKPMNCPGCLQIFNQGLKSYRDLPLRLSEFGKVHRYEPSGALHGLLRV 377

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE 209
           R F   DA+ F    + +    +   +  L I+  LG K++ ++    P   +G D    
Sbjct: 378 RAFTQDDAHIFCTEDQITDECLSVTNL-ILEIYKDLGFKNVLLQYSDRPQKRVGDD---- 432

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              + D  E+ +  +       I      ++       I +   A Y    D     L D
Sbjct: 433 --KIWDKAESALLKA-------IKQSKLKYE-------INKGEGAFYGPKIDF---VLRD 473

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVA 326
           ++  + +     +++          +LP  + A++  +DG K   V +     G++    
Sbjct: 474 TIGRDWQCGTLQVDL----------NLPSRLGASYVSSDGSKKVPVMLHRALFGSLERFI 523

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + GK  +W   +AP +  ++ I +      +  +KI+ +  K G +   D   +
Sbjct: 524 GILIEHYAGKLPLW---LAPIQAVVLPIASE---FDNYAKKIFEQCMKAGINTEVDLKNK 577

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +I  +     L   PL +I G K V    V I+   +  +E +SL+  I   S +
Sbjct: 578 KINYKIREHSLSKVPLLLICGEKEVKGKSVTIRKLGSEKQETLSLDRAIKKISQQ 632


>gi|170701132|ref|ZP_02892106.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133954|gb|EDT02308.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 635

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    +      ++N + +S   ++   G + I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQFIAESIAFNTLAMS---VYKDFGFEHIDIKLSLRPEQRA 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GTDETWDRAEQGLRDALTACGLSWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G    W   +APF+  ++NI A  QV  +    +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPAW---LAPFQAVVLNI-AESQV--EYAHSLTQTLQKQGVRVAGDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610


>gi|152974217|ref|YP_001373734.1| prolyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152022969|gb|ABS20739.1| prolyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 476

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FGT +S      +   +GK  YV   S+G+ + R++  +I    D  G+
Sbjct: 223 GKALQTGTSHNFGTNFSEAFEIKYLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGL 281

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ ++ I  H +   +   ++  R+ +V   V  D   +  G +F   ++ 
Sbjct: 282 VIPPKVAPVQVMIVPIAQHKEGILEKVAELKERIQQVA-RVRIDASSKTPGWKFNEYEMK 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K +  ++V +  R T  +E +S++++
Sbjct: 341 GVPIRLEVGPKDIEKNQVVLVRRDTKEKECVSMDQL 376


>gi|329733112|gb|EGG69449.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 644

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|262403446|ref|ZP_06080004.1| threonyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262349950|gb|EEY99085.1| threonyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 642

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSVFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   M+ P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMEIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|327314606|ref|YP_004330043.1| threonine--tRNA ligase [Prevotella denticola F0289]
 gi|326946255|gb|AEA22140.1| threonine--tRNA ligase [Prevotella denticola F0289]
          Length = 649

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 148/415 (35%), Gaps = 65/415 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +   +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQDLLRRLLRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVYAYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + PE  K  +       L++F   G  +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPEQVKTEFETNIDIILKVFKTFGFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W    AA      EK   +  E
Sbjct: 428 RDPNDKEKYIGSD-----------------------EVWEESEAAIKQACEEKGLKARVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 LGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNSKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D   K+ A L     
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAFKVKAYLDAHDL 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
               DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M++E
Sbjct: 577 RSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRQQGGGEQATMTME 631


>gi|290996111|ref|XP_002680626.1| prolyl-tRNA synthetase [Naegleria gruberi]
 gi|284094247|gb|EFC47882.1| prolyl-tRNA synthetase [Naegleria gruberi]
          Length = 575

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 127/338 (37%), Gaps = 63/338 (18%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E +M   +   IKS+R+LP    Q     R E +     +RSREF  ++ 
Sbjct: 147 DEPIALRPTSETIMYPSYAKWIKSHRDLPLKLNQWTNVVRWEFKHAVPFIRSREFYWQEG 206

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           +S     E +K     +   Y R +  +   ++P                ++     E +
Sbjct: 207 HSAFKNFEQAKTEVYDILELYKRTYEEI--LAVP----------------VIKGKKTEAE 248

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   DF         T  +  I  N                                 R
Sbjct: 249 KFAGADF--------TTTIEAFIPTN--------------------------------GR 268

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++     + G  +S      F+  D K   V   S+G+ + R +  +I    D KG++ 
Sbjct: 269 AVQAATSHHLGQNFSRMFKIEFEAEDKKSKLVYQNSWGL-STRSLGVMIMVHGDDKGMVL 327

Query: 341 PDSVAPFKISLINI--KAHDQVCRDACEK-IYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           P  VA  ++ LI +  K  D    +   K I+A+L + G  +  DD  E+  G ++   +
Sbjct: 328 PPRVAFTQVVLIPLYFKNKDNSELETKSKTIFAQLEENGVRIKLDDRLEKTPGWKYNYWE 387

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G PL++ +G K + +    +  R  G +  + LE++
Sbjct: 388 LRGVPLRIEIGPKDLENGVAMLCRRDNGEKWSVPLEQL 425


>gi|282877699|ref|ZP_06286514.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281300271|gb|EFA92625.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 654

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 155/417 (37%), Gaps = 67/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R+ Q R G  E+  P + S +L+V SG Y  YGK+  + 
Sbjct: 263 KGMPIWLPKGTELRLRLQEMLRKIQKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                +D+  +  P +     ++F    +SY++LP    +    +R E      G+ R R
Sbjct: 323 IHTPEDDEEYMLKPMNCPHHCEVFACKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K+ + ++      +F      +   +              I L
Sbjct: 383 SFTQDDAHIF-CRPDQVKNEFLRVMDIIQAVFTIFNFDNFEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W     A  +   EK  D+   
Sbjct: 428 RDPNDKEKYIGSD-----------------------EVWAESEQAIIEACKEKGLDAKVA 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPQRFKLEYTAEDNTKQTPVMVHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEK-IYARLSKVG 376
           G++    AV+     G   +W  P+ VA   IS        QV +   E+ I A +    
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPEQVAILPISEKFNGYAQQVVKYFTEQDIRATI---- 580

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M +E+
Sbjct: 581 -----DDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRKQGGGEQATMKMED 632


>gi|302346317|ref|YP_003814615.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302150675|gb|ADK96936.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 649

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 149/416 (35%), Gaps = 65/416 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G +    +  ++R         E+  P +   +L+V SG Y  YGK+  +
Sbjct: 262 GKGLPIWLPKGTQLRLRLQELLRRLLRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDAFQ 321

Query: 96  L--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                  D+  +  P +     +I+    +SY++LP    +    FR E      G+ R 
Sbjct: 322 PIHTPEEDEEYMLKPMNCPHHCEIYAHKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRV 381

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F + P+  K  +       L++F   G  +   +              I 
Sbjct: 382 RTFTQDDAHIF-VRPDQVKAEFENNIDIILKVFKTFGFDNYEAQ--------------IS 426

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D  + + +   D                       E W    AA  +   EK  ++  
Sbjct: 427 LRDPEDKEKYIGSD-----------------------EVWEESEAAIKEACAEKGLNARV 463

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      +   D  K   V +    
Sbjct: 464 ELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNSKKTPVMVHRAP 523

Query: 319 IGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G++    AV+     G   +W  PD VA   IS        +   D   K+ A      
Sbjct: 524 FGSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYARKVKAYFDAHD 575

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M++E
Sbjct: 576 VRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRQQGGGEQATMTME 631


>gi|325860506|ref|ZP_08173616.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325481987|gb|EGC85010.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 649

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 148/415 (35%), Gaps = 65/415 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +   +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQDLLRRLLRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDSFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVYAYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + PE  K  +       L++F   G  +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPEQVKTEFETNIDIILKVFKTFGFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W    AA      EK   +  E
Sbjct: 428 RDPNDKEKYIGSD-----------------------EVWEESEAAIKQACEEKGLKARVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 LGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNSKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D   K+ A L     
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAFKVKAYLDAHDV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
               DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M++E
Sbjct: 577 RSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRQQGGGEQATMTME 631


>gi|167769368|ref|ZP_02441421.1| hypothetical protein ANACOL_00694 [Anaerotruncus colihominis DSM
           17241]
 gi|167668336|gb|EDS12466.1| hypothetical protein ANACOL_00694 [Anaerotruncus colihominis DSM
           17241]
          Length = 635

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 161/413 (38%), Gaps = 51/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I++   G   + P G    + + +  REE  + G  E+  P + + +LW  SG +D Y K
Sbjct: 255 IYEEGPGFPFFFPKGMILRNLLESFWREEHQKHGYQEIRTPLILNEELWHRSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           + +     +D+     P +      +++  + SYR+LP    ++ +  R EL     G+M
Sbjct: 314 DNMYTTKIDDRDYAIKPMNCPGGILVYKRRMNSYRDLPQRLAELGIVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTP---EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F +TP   E        +  S  R+F                      
Sbjct: 374 RVRCFTQDDAHIF-MTPDQIEAEVLGVINLIDSIYRVF---------------------G 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            ++ +   T       S++  +    +     +D     ++ E   A Y    D H   L
Sbjct: 412 FDYFLELSTRPEDSMGSEEQWETATAALRKALEDNGRPYTVNEGDGAFYGPKIDFH---L 468

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            DS+        R  + G I   F    ++ L     + G+DG+ H  V +     G++ 
Sbjct: 469 RDSI-------GRTWQCGTIQLDFQMPERFDL----AYIGSDGERHRPVMVHRTAFGSIE 517

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G   +W   +AP +I ++ +   D+    A + +   L++ G  +  D 
Sbjct: 518 RFIGILIEHYAGAFPLW---LAPVQIKVLPVT--DEHIPYA-QSVADTLTRAGLRIELDS 571

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E++G +   A L   P  +++G K     +V ++ R  G    M L + + 
Sbjct: 572 RNEKVGYRIREAQLQKIPYMLVLGGKEAESGEVAVRDRRDGKTTTMLLADFVE 624


>gi|325954887|ref|YP_004238547.1| threonyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437505|gb|ADX67969.1| threonyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 640

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/420 (20%), Positives = 155/420 (36%), Gaps = 65/420 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   + ++Q + G   +  P +   +L+V SG Y  YG +  + 
Sbjct: 259 QGLPLWLPKGAALRRKLENFLLKQQQKLGYEMVITPHIGQKELYVTSGHYAKYGADSFQP 318

Query: 97  ADRNDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++    +  P +     +I+++   SYR+LP  + +    +R E      G+ R R
Sbjct: 319 IQTPNEGEEFLLKPMNCPHHCEIYKTSQWSYRDLPKRYAEFGTVYRYEQSGELHGLTRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  T +     + K+    L +F  LG  +   +              I L
Sbjct: 379 GFTQDDAHIF-CTSDQLLEEFKKVIDLVLFVFESLGFDNYSAQ--------------ISL 423

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A      EK   ++ E
Sbjct: 424 RDPNNKEKYIGTD-----------------------ENWEKAENAIITAAKEKNLPTVVE 460

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
           +   +  G +        +G  +  GT    Y+LP     ++ G D + H  V +     
Sbjct: 461 HGEAAFYGPKLDFMVKDALGRQWQLGTIQVDYNLPERFELSYIGPDNQAHRPVMIHRAPF 520

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+M    A++  +  G   +W  PD      IS        +   +  EK+   L++   
Sbjct: 521 GSMERFIAILLENTAGNLPLWLTPDVFTILPIS--------EKYVEFGEKVLNLLAEQEI 572

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +   D+  E+ G +   A++   P  +IVG K   +  V ++    G   +M +EE I +
Sbjct: 573 NGLIDNRNEKTGKKIRDAEVKKIPYMLIVGEKEEENGTVSVRKHGEGDLGEMKIEEFIQF 632


>gi|187932904|ref|YP_001884583.1| threonyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|238691610|sp|B2TIT5|SYT_CLOBB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187721057|gb|ACD22278.1| threonine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 643

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 84/416 (20%), Positives = 157/416 (37%), Gaps = 54/416 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K +  +   + +E+ R G +    P +  +DL+  SG +D Y   M  L
Sbjct: 259 QGLPLLMPKGAKIVQTLQRWVEDEEERRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D      ++   P        I+ +   SYR+LP  + +    FR+E      G++R R
Sbjct: 319 GDEEKDEEVFALRPMTCPFQYTIYNAEQHSYRDLPIRYGETSTLFRNESSGEMHGLIRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F + D +   +TPE  +  +  +      +   LG            I  D+S+ F   
Sbjct: 379 QFTLADGHLI-VTPEQLEEEFKGVLELIQYLMKTLG------------IDEDISYRFSKW 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNEKLFDS 270
            D   T+ + +        P       D  ++ +I++     Y    D    +  KL   
Sbjct: 426 -DPNNTEKYIND-------PEAWNKTQD--TMRTILDHLKINYVEADDEAAFYGPKL--- 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATF------KGADGKDHYVQMGSYGIGAMRV 324
                 +  R +       F  +    ++  F      K  + K  Y+   S  IG    
Sbjct: 473 -----DLQCRNVHGKEDTLFTVQIDFALAERFDMSYIDKNGEKKRPYIIHRS-SIGCYER 526

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A++   + G    W   ++P ++ ++ I        D  E +   L   G  +  D  
Sbjct: 527 TLAMLIEKYAGAFPTW---LSPVQVKVLPISDK---YNDYAESVVKSLRNKGVRIEADYR 580

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVIN 436
            E+IG +   A L   P  ++VG K  ++++V ++ R       I+ D   E ++N
Sbjct: 581 AEKIGYKIREARLERTPYILVVGEKEAANNEVSVRSRKNDDEGAIKLDAFTERLLN 636


>gi|116328741|ref|YP_798461.1| threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331652|ref|YP_801370.1| threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280605|sp|Q04R58|SYT_LEPBJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122283474|sp|Q04ZG7|SYT_LEPBL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116121485|gb|ABJ79528.1| Threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125341|gb|ABJ76612.1| Threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 639

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 4/160 (2%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +    +   G   W P G    +++   +R E N+ 
Sbjct: 234 QYLFQIEEAKKRDHRKIGKELDLFS--FQKEGPGFPFWHPKGTILWNSLADYLRAECNKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+ S
Sbjct: 292 GYQEIKTPAVLSSELWKKSGHWDNFHENMY-FTDIDEEDYALKPMNCPGCSLIYKHHLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP  F +     R EL     G+ R R F   D++ +
Sbjct: 351 YRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIY 390


>gi|329115645|ref|ZP_08244367.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326695073|gb|EGE46792.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 645

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 165/433 (38%), Gaps = 57/433 (13%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + +  G+ H  + + G   W   G +    +   +R  Q R G  E+  P 
Sbjct: 240 EAEKRDHRRIGKEMGLFHFQEEAVGQVFWHAKGWRLYTALQDYMRRAQTRHGYQEVRTPQ 299

Query: 74  LQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG +D Y   M +   +  +K +   P +      IFR  ++SYR LP   
Sbjct: 300 LVDRALWEASGHWDKYRHHMFIATVEDENKTLALKPMNCPCHVQIFRHGLRSYRELPLRM 359

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGL 190
            +     R E      G+MR R F   DA+ F    E         FV  L  ++  LG 
Sbjct: 360 AEFGACHRYEPSGALHGLMRVRGFTQDDAHIF--CTEDQIADETVRFVKMLHDVYQDLGF 417

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFD---DIISLN 246
           + + ++    P     S E    A+    +  C+   +++   P E   +    + +  +
Sbjct: 418 EHVRVKFADRPEQRAGSDEVWDKAENALKEA-CTVAGVEYEHNPGEGAFYGPKLEFVLRD 476

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +I   W         V        LPE                        + A++ G D
Sbjct: 477 AIGRDWQCGTLQVDLV--------LPER-----------------------LDASYIGED 505

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA- 364
            G+   V +    +G+      ++   H G+  +W   +AP ++ + +I +      DA 
Sbjct: 506 SGRHRPVMLHRAILGSFERFLGILIEQHAGRFPLW---LAPVQVVVASIVS------DAA 556

Query: 365 --CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++ A L + G  V  D   ++I ++     +   P+ ++VG +   +  V ++   
Sbjct: 557 PYAEEVAAALREAGLAVEADVRNDKINAKVREHSVARVPVILVVGRREAEERTVAMRRLG 616

Query: 423 TGIREDMSLEEVI 435
           T  +E +SL + +
Sbjct: 617 TQAQETLSLNDAV 629


>gi|307294661|ref|ZP_07574503.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306879135|gb|EFN10353.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 660

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 153/430 (35%), Gaps = 68/430 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G   W P G      + A +R   +  G  E+  P +  A  W +SG +  Y +
Sbjct: 260 LQQEAHGSVFWHPKGYLIWRELEAYMRRAIDEAGYREVKTPQVMDARQWEQSGHWGKYRE 319

Query: 92  EMLRLADRNDKAMIYGPTHEEVM-------------TDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D        GP   E                 IF+  IKSYR+LP  FY+    
Sbjct: 320 NMFVIPDEVPNVEDEGPLVSEAADWMALKPMNCPAHILIFKQGIKSYRDLPLRFYENGCC 379

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R+E      G+MR R+F   DA+ F               V  +R F  L  +      
Sbjct: 380 HRNEPHGALHGLMRVRQFTQDDAHIF---------CREDQIVEEVRAFCALADR------ 424

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I  D    + +       + F +++  D                    E+     A
Sbjct: 425 ----IYKDFGFTYSIKLALRPEKRFGTEEMWD-----------------KAEEELRNAVA 463

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIE------VGHIFYFGTKYS---LP--MSATFKGAD 306
           A      E  ++ LP      A  +E      +G  +  GT  S   LP  + A++ G D
Sbjct: 464 AAGLNTPEYGWEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQSDRVLPERLDASYVGED 523

Query: 307 GKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+ H   M    I G+      ++   + GK  +W   +AP +  +  I +      D  
Sbjct: 524 GERHRPVMLHRAIFGSYERFIGILIEHYAGKFPLW---LAPVQAVVATIVSD---ADDYA 577

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +  +L  VG     D   E+I  +     L   P  ++VG +   +  V ++      
Sbjct: 578 QTVAEKLRAVGIRAETDVRNEKINYKVREHSLAKVPNLLVVGRREADEGTVALRELGKEG 637

Query: 426 REDMSLEEVI 435
           +  +S+E+VI
Sbjct: 638 QTILSVEDVI 647


>gi|313205743|ref|YP_004044920.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Riemerella
           anatipestifer DSM 15868]
 gi|312445059|gb|ADQ81414.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Riemerella
           anatipestifer DSM 15868]
 gi|315022861|gb|EFT35885.1| threonyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
          Length = 641

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 169/428 (39%), Gaps = 63/428 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G      + + + E Q + G   +  P + + +L+  SG Y+ YG +  +  
Sbjct: 260 GLPLWLPKGAALRKKLESFLSEAQRKGGYEFVMTPHIGNIELYKTSGHYEKYGADSFQPI 319

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 +  +  P +     +++++   SY++LP  + +    +R E      G+ R R 
Sbjct: 320 KTPHVGEEFLLKPMNCPHHCEVYKAQQWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRG 379

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK----SIPMRAESGP---IGGDLS 207
           F   DA+ F  TP+     + K+    L +F  LG +     + +R +      IG + +
Sbjct: 380 FTQDDAHLF-CTPDQLLEEFEKVIDLVLYVFKSLGFEDFIAQVSLRDKENRAKYIGSEEN 438

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E+ +  +         ++N        LN++VE   A +           
Sbjct: 439 WE------KAESAIITA---------AKNK------GLNTVVEYGEAAFYGPK------- 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAM-R 323
            D +   K    R  ++G I      Y+LP     T+ G+D + H  + +     G+M R
Sbjct: 471 LDFMV--KDALGRSWQLGTI---QVDYNLPERFDLTYVGSDNERHRPIMIHRAPFGSMER 525

Query: 324 VVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            +A +IE++  G   +W  PD      IS        +   D  +K+   L         
Sbjct: 526 FIAILIENTA-GDFPLWLNPDQYILLPIS--------EKYTDYAKKVSQLLENHDICGLV 576

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D+  E+ G +   A++   P  +IVG     +  V ++ R  G   +MS+E  + Y    
Sbjct: 577 DERNEKTGKKIRDAEMKKIPFMLIVGENEAGNQTVSVRKRGEGDLGEMSIESFVEY---- 632

Query: 442 FSNNRPVL 449
           F N   V+
Sbjct: 633 FKNEAKVI 640


>gi|310815279|ref|YP_003963243.1| threonyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754014|gb|ADO41943.1| threonyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 648

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 86/421 (20%), Positives = 158/421 (37%), Gaps = 62/421 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R  Q + G +E++ P + +  LW +SG +++Y  
Sbjct: 260 MQEEAPGQVFWHPNGWTVYTALQDYMRRRQRKDGYVEVNTPQVVNRVLWEKSGHWENYRD 319

Query: 92  EM--LRLADRNDKAMIYG---PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  + + +   K  +     P +      IF   +KSYR LP    +     R E    
Sbjct: 320 NMFIVEVDEEGAKEKVVNALKPMNCPCHVQIFNHGLKSYRELPLRMAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    S  K F+ +L  ++  LG +S  ++  + P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CTEDQIESETKKFIEFLASVYADLGFESWRVKLSTRPEKR 437

Query: 202 IGGDLSHEFIVLADTGETQV--FCSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAP 255
           IG + S       D  E  +   C K   D+ +      F     + +  ++I   W   
Sbjct: 438 IGTEESW------DHAEQSLGNACRKAGYDYELQEGEGAFYGPKLEFVLTDAIGRDW--- 488

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQM 314
                     ++  +LPE                        + A + G DG  H  + +
Sbjct: 489 -----QCGTLQVDPNLPER-----------------------LDANYIGQDGAKHRPIML 520

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G+      ++  +  GK   W   +AP ++ + +I +      D   ++ A LS 
Sbjct: 521 HRACLGSFERFVGILIENFAGKLPFW---LAPRQVVVASIVSD---ADDYVHEVVAALSA 574

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G     D   E+I  +     L   PL + +G++ V +  V ++         MSL+ +
Sbjct: 575 AGVRAEADTRNEKINYKVREHSLGKVPLILAIGAREVEERTVTVRRLGENQTATMSLDAI 634

Query: 435 I 435
           +
Sbjct: 635 L 635


>gi|295677048|ref|YP_003605572.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436891|gb|ADG16061.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 635

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 163/424 (38%), Gaps = 53/424 (12%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H      +F  
Sbjct: 287 AGYLEIKTPLIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGH----VQVFNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE--GSKHSYNKM 177
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F    +  G   ++N +
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFIGESIAFNTL 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +S  R F   G  ++ ++    P     + E    A+ G  +   +       +P E  
Sbjct: 403 AMSVYRDF---GFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEG- 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                           A Y    + H   + D+L  + +     +++      G +Y   
Sbjct: 459 ----------------AFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLGAEY--- 496

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   + +   + +    +G+M     ++   H G    W   +AP ++ ++NI A 
Sbjct: 497 ----VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNI-AE 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q   +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V 
Sbjct: 549 SQA--EYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVA 606

Query: 418 IKHR 421
           ++ R
Sbjct: 607 VRAR 610


>gi|167907142|ref|ZP_02494347.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
          Length = 670

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 2/170 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G   W P G      + A +R  Q   G +E++ P +    LW  SG + +Y   
Sbjct: 257 QEDAPGAVFWHPRGWAVFQELIAYMRRRQQDAGYVEVNSPDVMDRSLWEISGHWQNYRDH 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      + +A+   P +      ++R  +KSYR+LP    +     R E      G++R
Sbjct: 317 MFTTETEDGRALALKPMNCPGSALLYRHGLKSYRDLPIRMGEFGKVHRYEPSGSLHGLLR 376

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            R F   DA+ +  TP+       ++    L I+ + G   + ++  + P
Sbjct: 377 VRHFTQDDAHIY-CTPQQMDAECREVVTLVLDIYRQFGFDEVRIKLSTRP 425


>gi|77458158|ref|YP_347663.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123758422|sp|Q3KEY2|SYT_PSEPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77382161|gb|ABA73674.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 640

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 9/196 (4%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRDNGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  +          + ++   G   
Sbjct: 356 EFGACHRNEPSGALHGIMRVRAFTQDDAHIF-CTEEQMQAESAAFIKLTMDVYRDFGFTD 414

Query: 193 IPMRAESGP---IGGD 205
           + M+  + P   +G D
Sbjct: 415 VEMKLSTRPEKRVGSD 430


>gi|238922273|ref|YP_002935787.1| threonyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|238873945|gb|ACR73653.1| threonyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 591

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 154/405 (38%), Gaps = 62/405 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I++++ + G + +  P + + +L+  SG +D Y + M   
Sbjct: 201 RGLPMFLPKGYTVWQELENYIKDKERKLGYLHVMTPCVGTVNLYKTSGHWDHYKENMFPA 260

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ + + SY++LP    +I   FR E      G+ R R F
Sbjct: 261 MEVEGESFVLRPMNCPHHMMIYANKMHSYKDLPIRIGEIAHDFRFEASGTLKGIERGRHF 320

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ F +TPE  +  + K+                           DL  E      
Sbjct: 321 CQNDAHLF-VTPEQIESEFAKVV--------------------------DLIFE------ 347

Query: 216 TGETQVFCSKDF--MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                    KDF   D+       D +D +  +   E W     A   V N+   +   E
Sbjct: 348 -------TYKDFNITDYRCVLSLRDPEDKVKYHDDDEMWNNAENALRKVLNDIGIEYTEE 400

Query: 274 NKRVSARG--IEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY-VQMGSYGI 319
               +  G  ++V      G +Y+L             + T+   DG+    V +    +
Sbjct: 401 IGEAAFYGPKLDVNVKPAIGNEYTLSTCQLDFCLPSKFNLTYIDKDGQRKTPVVLHRAIL 460

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++    A I     G   +W   +AP + +++ +K  D+        +Y  L+  G  V
Sbjct: 461 GSLDRFMAYILEETKGNLPLW---LAPVQATILPVKNEDEELNAYAHGLYDYLADNGIRV 517

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             D+  E++G +   A +   P  +++G    +D  V   +RL G
Sbjct: 518 EIDERAEKLGYRVREAQVKKIPYLIVLGKNEAADGTV--SYRLHG 560


>gi|304319895|ref|YP_003853538.1| Threonyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303298798|gb|ADM08397.1| Threonyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 657

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 57/148 (38%), Gaps = 22/148 (14%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G +  H KG   WL L         A IR   +  G  E+  P L  A LW  SG +  Y
Sbjct: 262 GSVFWHPKGYTMWLAL--------EAYIRRRLDAAGYKEVKTPQLIDAKLWQSSGHWGKY 313

Query: 90  GKEMLRLADR-------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            + M  + D                K M   P +      IFR  I SYR+LP    +  
Sbjct: 314 SQNMFVVPDEVPDVEGEGPVIDPEAKLMAVKPMNCPAHVQIFRQGITSYRDLPIRMAEFG 373

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSF 163
              R+E      G+MR R+F   DA+ F
Sbjct: 374 CCHRNEPHGALHGIMRVRQFTQDDAHIF 401


>gi|167045283|gb|ABZ09941.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG9P22]
          Length = 479

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 131/343 (38%), Gaps = 68/343 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +   +F   I+S+R+LP          R E++     +R+ EFL ++ +    T 
Sbjct: 111 PTSETLAYSLFSKWIRSWRDLPLKMNFWNSALRAEIKGTKPFLRTSEFLWQEGH----TV 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +K    K     L ++ +                  +  E  V   TG+         
Sbjct: 167 HATKDEAEKEVADILELYKKT-----------------IEEELAVPVITGKK-------- 201

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                 SE   F                      V+ + L   +P+ K      +++G  
Sbjct: 202 ------SEKDKF-------------------VGAVYTDTLESLMPDGK-----ALQMGTS 231

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  +S P    +   +  + +    S+G+ + R++  +I    D KG++ P  VAP 
Sbjct: 232 HFLGQNFSKPFDVKYLDENNVETFAWQTSWGV-SWRLIGGMIMIHGDDKGLVLPPKVAPI 290

Query: 348 KISLINI----KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVADLLGFP 401
           ++ +I I       + V + AC+ I   LS     V  DD  EQ+  G +F   ++ G P
Sbjct: 291 QVVIIPIYYSNDEKENVLQTACQ-IKDSLSNNDIRVHLDDR-EQLTPGFKFNDWEMRGIP 348

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++ +G K ++ ++  +  R T  +  + ++ +    S    N
Sbjct: 349 IRIEIGPKDIAKNQAVLVRRHTQTKTSIEMDSLTEKISSELKN 391


>gi|149916340|ref|ZP_01904860.1| threonyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149809794|gb|EDM69646.1| threonyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 663

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 16/207 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + R   + H  + + G   W P G      +   +R +Q
Sbjct: 234 KDYLTFLEE----AEKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWTIYTTLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-----IYGPTHEEVMTD 116
            R G +E++ P +    LW  SG +D Y + M  +    D A         P +      
Sbjct: 290 RRGGYVEVNTPQVVDRKLWEASGHWDKYQEHMFIVEVDEDHAREKSINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F    E    +  
Sbjct: 350 IFNRGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF--CREDQIEAET 407

Query: 176 KMFVSYL-RIFHRLGLKSIPMRAESGP 201
           K F+ +L  I+  LG     ++    P
Sbjct: 408 KKFIGFLSEIYRDLGFSDFKVKFSDRP 434


>gi|91217375|ref|ZP_01254335.1| prolyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91184483|gb|EAS70866.1| prolyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 492

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++   +  F    GK  YV   S+G+ + R++ A++ +  D  G+
Sbjct: 234 GKALQAGTSHFLGENFAKAFNVKFTSDQGKQEYVWATSWGV-STRLMGALVMTHSDDNGL 292

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDD-MGEQIGSQFAV 394
           + P ++AP ++ ++ I  +++      EK   I   L   G  V +D+    + G +FA 
Sbjct: 293 VLPPNLAPIQVVIVPIFKNEEQLELVSEKANLIANDLKSKGVRVKFDNRTTHKPGWKFAE 352

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            +L G PL++ +G K +    VE+  R T
Sbjct: 353 YELKGIPLRIAIGPKDLEKGTVELARRDT 381



 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ ++  PT E V+ + F+  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 116 DEELVVRPTSEAVIWNTFKGWIQSYRDLPLKINQWANVVRWEMRTRL-FLRTTEFLWQEG 174

Query: 161 YS 162
           ++
Sbjct: 175 HT 176


>gi|311279396|ref|YP_003941627.1| threonyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308748591|gb|ADO48343.1| threonyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 642

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G + +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGENNERQVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTRKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVETGKVAVRTRRGKDLGSMDVNEVI 625


>gi|134282011|ref|ZP_01768717.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134246540|gb|EBA46628.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 681

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 2/170 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G   W P G      + A +R  Q   G +E++ P +    LW  SG + +Y   
Sbjct: 268 QEDAPGAVFWHPRGWAVFQELIAYMRRRQQDAGYVEVNSPDVMDRSLWEISGHWQNYRDH 327

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      + +A+   P +      ++R  +KSYR+LP    +     R E      G++R
Sbjct: 328 MFTTETEDGRALALKPMNCPGSALLYRHGLKSYRDLPIRMGEFGKVHRYEPSGSLHGLLR 387

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            R F   DA+ +  TP+       ++    L I+ + G   + ++  + P
Sbjct: 388 VRHFTQDDAHIY-CTPQQMDAECREVVTLVLDIYRQFGFDEVRIKLSTRP 436


>gi|167747292|ref|ZP_02419419.1| hypothetical protein ANACAC_02006 [Anaerostipes caccae DSM 14662]
 gi|167653270|gb|EDR97399.1| hypothetical protein ANACAC_02006 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 159/406 (39%), Gaps = 73/406 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++  +   TG   +++P  +  + L  E    + +  E+  
Sbjct: 38  KGCMILRPNGYAIWENIQKVMDAKFKETGVENVAMPMFIPESLLEREKDHVEGFAPEVAW 97

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    +K +       PT E +  D + + I+SYR+LP  + Q    +++    RP    
Sbjct: 98  VTHGGNKKLEERLCVRPTSETLFCDFYSNIIQSYRDLPKLYNQWVSVVRWEKSTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EF  ++ ++   T + ++    +M   Y                            
Sbjct: 155 LRTSEFYWQEGHTAHATADEAEERTVQMLNMY---------------------------- 186

Query: 210 FIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
               AD      FC + ++  P+   + T+ +     N       A Y   + +H+ K  
Sbjct: 187 ----AD------FCEQ-YLAIPVVKGQKTEKEKFAGAN-------ATYTIEALMHDGKAL 228

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            S              G    FG  ++      +   + K  YV   S+G+ + R++ A+
Sbjct: 229 QS--------------GTSHNFGDGFAKAFDIQYTDKNNKLQYVHQTSWGM-STRIIGAI 273

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    D  G++ P  +AP +  ++ I    +   +  E+I   LSK    V  DD  +  
Sbjct: 274 IMVHGDDSGLVLPPKIAPVQTMIVPIMQKKEGVLEKAEEIRECLSK-NYKVKVDDSDKSP 332

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F+  ++ G P ++ +G K +  ++  I  R T  +  +SL+E+
Sbjct: 333 GWKFSEQEVQGIPTRIEIGPKDIEKNQAVIVRRDTREKIFVSLDEI 378


>gi|134292577|ref|YP_001116313.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|134135734|gb|ABO56848.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 402

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 31  MIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           + HQ   S G   W P G      +   IR    + G  E+  P + S DLW  SG ++ 
Sbjct: 15  LFHQQDESPGGIFWHPRGMVLYRVIEEYIRVRMRQAGFSEVRTPQILSRDLWERSGHWEK 74

Query: 89  YGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +G  M  L +DRN   +   P        IF+   +SYR+LP  + +     R E     
Sbjct: 75  FGPNMFSLESDRNPYCL--KPMSCPCHVQIFKKGSRSYRDLPIRYCEFGAVHRAEPSGAL 132

Query: 148 -GVMRSREFLMKDAYSFDL 165
            G+MR+R F   DA+   L
Sbjct: 133 HGLMRARAFTQDDAHVLCL 151


>gi|294141074|ref|YP_003557052.1| threonyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293327543|dbj|BAJ02274.1| threonyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 642

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G +    +   IR++  +    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWRLFLELETFIRQKLGQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTKSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G K+I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVQQEVSACIQMVYDTYETFGFKNIVVKLSTRPEQRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+    Q   + D     +P E   +   I                       L
Sbjct: 432 -EMWDRAEEALKQALTANDIEFEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPGRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   +P  +AP ++ ++NI        +  +++   L + G     D  
Sbjct: 521 FLGILIEEYAGK---FPTWLAPMQVVVMNITDKQS---NYADEVVNLLKENGIRASKDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|312961943|ref|ZP_07776440.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283753|gb|EFQ62337.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 640

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 9/196 (4%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R  + H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLNLFHLQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      N    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTQSENRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  +          + ++   G   
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQMQAESAAFIKLTMDVYRDFGFTE 414

Query: 193 IPMRAESGP---IGGD 205
           + M+  + P   +G D
Sbjct: 415 VEMKLSTRPEKRVGSD 430


>gi|315498771|ref|YP_004087575.1| threonyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315416783|gb|ADU13424.1| threonyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 640

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 154/415 (37%), Gaps = 52/415 (12%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  +  + H  +  +G+  W P G      + A +R   +  G +E+  P 
Sbjct: 239 EAEKRDHRKLGRQMNLFHMQEEGRGMVFWHPHGWTLWRTLEAYMRRRLDAAGYVEVKTPQ 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +     W +SG +D Y   M        + +   P +      IF+  ++SY+ LP    
Sbjct: 299 VLDRTFWEKSGHWDKYRPNMFVCETVEGETLSLKPMNCPGHVQIFKVGLRSYKELPIRMA 358

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLK 191
           +     R E      G+MR R F   DA+ F    E         F++  R  H  LG++
Sbjct: 359 EFGACHRYEPSGSLHGLMRVRGFTQDDAHIF--CREDQIVEETTKFITLCRQVHADLGMQ 416

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +                E I LA   E +   S +F D                  I E 
Sbjct: 417 A----------------EHIALATRPEVRA-GSDEFWDKAEAQMAEAARAAGVEPVIAEG 459

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGAD 306
             A YA   D     + D+             +G  +  GT    Y LP  + A +   D
Sbjct: 460 DGAFYAPKLDF---IVRDA-------------IGRTWTCGTIQLDYVLPERLGAEYVAED 503

Query: 307 G-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G +   V +    +G+      +I  ++ GK  +W   +AP ++ +  I +      D  
Sbjct: 504 GSRQRPVMLHRAILGSFERFIGIIIENYGGKFPLW---LAPIQVVVAPITSD---ANDYA 557

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           +++ ++L  VG  V  D   E+I  +     L   P+  +VG K     +V +++
Sbjct: 558 QQVASKLRSVGLRVDTDLRNEKINYKIREHSLAKVPVIAVVGRKEAETGEVALRY 612


>gi|195472319|ref|XP_002088448.1| Aats-thr [Drosophila yakuba]
 gi|194174549|gb|EDW88160.1| Aats-thr [Drosophila yakuba]
          Length = 747

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/410 (20%), Positives = 169/410 (41%), Gaps = 44/410 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + + + ++ E  + G  E+  P + +A LW+ SG +  Y +
Sbjct: 361 FHELSPGSCFFQPRGAHIYNTLMSFMKAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAE 420

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      IF +  +S+R LP       +  R+EL     G+ 
Sbjct: 421 NMFSF-EAEKETFALKPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLT 479

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  TPE  K S  K  + +L   + +   S  +   + P      +  
Sbjct: 480 RVRRFQQDDAHIF-CTPEQIK-SEMKGCLEFLHHVYTIFGFSFQLVLSTRP-----DNYL 532

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             L      +   ++   +F +P +    D             A Y    D+    + D+
Sbjct: 533 GELEQWNAAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDA 577

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVI 329
           L    + +   ++    F    +++L    ++   DG K   V +    +G++  + A++
Sbjct: 578 LKRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAIL 629

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYAR--LSKVGCDVFWDDMGE 386
             +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++A   +S+  CD      G+
Sbjct: 630 TENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHAAGFMSEADCDA-----GD 681

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I 
Sbjct: 682 TMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELIT 731


>gi|83282659|ref|XP_729866.1| prolyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488909|gb|EAA21431.1| prolyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 728

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 128/335 (38%), Gaps = 69/335 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M  +F   I+S+R+LP    Q     R E +     +R+REFL ++ +    T 
Sbjct: 340 PTSETIMYSVFSKWIRSHRDLPLKLNQWNTVVRWEFKQPTPFIRTREFLWQEGH----TA 395

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++    KM    L I+ R   + + +    G            +   GE   F   +F
Sbjct: 396 HKNEEEAVKMVFDILDIYRRWYEECLAVPVIKG------------IKSEGEK--FGGANF 441

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                 S N  F        I E   A  AATS                           
Sbjct: 442 T-----STNETF--------ISESGRAIQAATS--------------------------- 461

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            Y GT ++      F+       +V   S+G    R +  +I    D KG+I P +VA +
Sbjct: 462 HYLGTNFAKMFKIEFEDEQENKQFVHQTSWGC-TTRSIGVMIMMHSDNKGLILPPNVAKY 520

Query: 348 KISLINI--KAHDQV-----CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           K+ ++ I  K  D+      C+D  EK+    +++ C VF D      G +F   +L G 
Sbjct: 521 KVVIVPILYKNTDETAIFNYCKDI-EKVLKN-AQINC-VFDDRDLYSPGYKFNHWELRGI 577

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           P+++ VG K + ++      R    + ++  E V+
Sbjct: 578 PIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKESVL 612


>gi|229591579|ref|YP_002873698.1| threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|259516637|sp|C3JZN7|SYT_PSEFS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229363445|emb|CAY50645.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 640

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 9/196 (4%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R  + H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLNLFHLQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      N    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTQSENRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  +          + ++   G   
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQMQAESAAFIKLTMDVYRDFGFTE 414

Query: 193 IPMRAESGP---IGGD 205
           + M+  + P   +G D
Sbjct: 415 VEMKLSTRPEKRVGSD 430


>gi|289642346|ref|ZP_06474494.1| prolyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289507878|gb|EFD28829.1| prolyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 467

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 136/347 (39%), Gaps = 69/347 (19%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E V+ +      +SYR+LP    Q     R ELRPR   
Sbjct: 96  GKEL-------EEPVVVRPTSETVIGEYMAKWTQSYRDLPLLLNQWANVVRWELRPRL-F 147

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++         H       +Y R  H                       
Sbjct: 148 LRTSEFLWQEGHT--------AHVDQADAAAYARRIH----------------------- 176

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                     +V+  ++FM             +++L  +V + TA       ++   L  
Sbjct: 177 ---------LEVY--REFMT-----------SVLALPVLVGRKTAKERFAGAINTLTLEA 214

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            + + K      +++      G  ++      F GADG+ H     S+G  + R++  +I
Sbjct: 215 MMGDGK-----ALQMATSHELGQNFARAFDIDFLGADGQRHLAWTTSWG-SSTRMIGGLI 268

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
            +  D  G+  P  +AP ++ ++ ++  D    +   +I   L   G  V  D   G   
Sbjct: 269 MAHGDDNGLRIPPRLAPVQVIVLPVR-DDAALLERVSQITEGLQAAGVRVQLDARPGLSF 327

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A+L G P++V +G + ++   + +  R T  +  + L++V+
Sbjct: 328 GRRVTDAELKGIPVRVEIGPRDLAAGSITLARRDTSEKITVPLDDVL 374


>gi|300023294|ref|YP_003755905.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525115|gb|ADJ23584.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 650

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 5/177 (2%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G   W   G      + A +R +Q R G  E++ P +     W  SG +++YG+ 
Sbjct: 259 QEEAPGSVFWHAKGWTLFQTLIAYMRRQQQRAGYEEVNSPDMMEKHFWELSGHWENYGEN 318

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      +++     P +      I+++ +KSYR+LP+   +     R E      G++R
Sbjct: 319 MFTTVLPDERVFCCKPMNCPGHVQIYKNGLKSYRDLPYRIAEFGKVHRYEPSGALHGMLR 378

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            R F   DA+ F LT +       K+    L I+   G + I ++  + P   +G D
Sbjct: 379 VRHFTQDDAHIF-LTEDQIMEECLKINDLMLSIYKDFGFEEIVIKLSTRPEKRVGAD 434


>gi|220905829|ref|YP_002481140.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862440|gb|ACL42779.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 610

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 164/414 (39%), Gaps = 54/414 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G   +  P +   DL+  SG +  Y ++M  L 
Sbjct: 224 GLPLWTPKGTILRSTLEDFLKQEQLKRGYQPVVSPHIARVDLFKTSGHWQKYKEDMFPLM 283

Query: 98  DRNDK------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             +++        +  P +      I++S ++SYR+LP    +    +R E      G+ 
Sbjct: 284 SEDEQERQSEVGFVMKPMNCPFHIQIYKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLT 343

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGP-----IGG 204
           R R F + D++ F +TP      + K+    L +F +L LK+   R     P     IG 
Sbjct: 344 RVRGFTVDDSHLF-VTPSQLDDEFLKVVDLILSVFAQLQLKNFKARLSFRDPNSDKYIGS 402

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D + E    A     +      F      +      D I  +++  +W      T  V  
Sbjct: 403 DQAWEKAQTAIRQAVETLGMDHFEGIGEAAFYGPKLDFIFQDALEREWQ---LGTVQVDY 459

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                +LPE         E+ ++   G++    M           H    GS      R+
Sbjct: 460 -----NLPER-------FELEYVAEDGSRQRPVMI----------HRAPFGSLE----RL 493

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV--CRDACEKIYARLSKVGCDVFWD 382
           +  +IE  + G   +W   +AP ++ L+ +   DQ+   R   E++ A    +G  V  D
Sbjct: 494 IGILIE-EYAGDFPLW---LAPEQVRLLTV-GDDQMPFARQVAEQMQA----LGVRVVID 544

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G+++  +   A+    P+  ++G+K V    + I+ R  G    +S+ EV+ 
Sbjct: 545 TSGDRLPKKIRNAEKEKIPVMAVIGAKEVEADSLSIRTRAAGELGVISVPEVVE 598


>gi|319760484|ref|YP_004124422.1| threonyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039198|gb|ADV33748.1| threonyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 411

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 145/387 (37%), Gaps = 44/387 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W   G      +   IR++  +    E+  P +   +LW ++G +D+Y + +   A
Sbjct: 31  GMIFWHKNGWIIFQELKKFIRKKLQQYQYQEVKSPIMIDQELWKKTGHWDNYYEHIFITA 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             N    I  P +      IF   IKSY++LP    +     R+E      G+MR REF 
Sbjct: 91  SENRTYCI-KPMNCPGHIQIFNYGIKSYKDLPLRIAEFGHCHRNEPSGSLHGLMRIREFT 149

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  + E      N        ++H  G K I ++  + PI              
Sbjct: 150 QDDAHIF-CSIEQIPTELNYCIKMMYDVYHTFGFKKIIVKLSTRPI-----------KRI 197

Query: 217 GETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           GE  ++  ++  +   +  +N +F       +   Q  A Y    +     L DSL    
Sbjct: 198 GEDSIWDITEQCLVHILQKKNIEF-------TYQPQDGAFYGPKIEF---ILLDSL---- 243

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY---VQMGSYGIGAMRVVAAVIESS 332
               R  + G +      +SLP     K  D  + Y   V +    +G++     +I   
Sbjct: 244 ---KRAWQCGTV---QLDFSLPKLLKAKYIDNNNKYQIPVMIHRAILGSIERFIGLITEE 297

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + G     P  +AP +I L+N+     +       I  RL      V  D   E+IG + 
Sbjct: 298 YSG---FLPTWLAPTQIVLMNVTDAQSL---YVTNIANRLKFENFRVQIDLRNEKIGCKI 351

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK 419
            +  +   P  +I G+  V    + I+
Sbjct: 352 RLHTMHRVPYMIICGNSEVDHGTISIR 378


>gi|167582118|ref|ZP_02374992.1| threonyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 635

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W P G      V   +R   +  G +E+  P +    LW  SG + +Y +
Sbjct: 255 IQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    + +    ++NK+ +S   ++   G   I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEDQINSEAIAFNKLAMS---VYEDFGFDRIDIKLSLRPEQRM 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GSDETWDHAEEGLRNALKACGLEWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMMLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G   +W   +APF   ++NI A  Q   +  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPVW---LAPFHAVVLNI-AESQA--EYAQTVVQSLQKQGLRVSADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610


>gi|284006267|emb|CBA71503.1| threonyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 640

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 160/426 (37%), Gaps = 54/426 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L + +   RD      +L L    + + + G+  W   G      +   IR + N 
Sbjct: 230 AAYLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWVIFRELETFIRTKLNE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +++Y + M   +  N +  I  P +      IF   +K
Sbjct: 288 YRYQEVKGPLMMDRILWEKTGHWENYKENMFTTSSENREYCI-KPMNCPGHVQIFNQGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T +              
Sbjct: 347 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILTEVKSCIKMIY 405

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI-PSENTD 238
            ++   G + I ++  + P   IG D         D  E+ +  +   ++F   P E   
Sbjct: 406 HVYATFGFEKIAVKLSTRPEKRIGTDAQ------WDRAESDLAKALGDIEFDYQPGEGAF 459

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   I                       L+D L        R  + G +      +SLP 
Sbjct: 460 YGPKIEFT--------------------LYDCLD-------RAWQCGTV---QLDFSLPS 489

Query: 298 -MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A++   + +    V +    +G++     ++   + G    +P  +AP +I +INI 
Sbjct: 490 RLGASYVDENNERQVPVMIHRAVLGSLERFIGILTEQYAG---FFPTWLAPLQIVIINIT 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D  +K+  +LS  G  V  D   E+IG +     L   P  ++ G K V  ++
Sbjct: 547 DAQA---DFVQKVVKKLSNFGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESNQ 603

Query: 416 VEIKHR 421
           V ++ R
Sbjct: 604 VSVRTR 609


>gi|153835364|ref|ZP_01988031.1| threonyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148868112|gb|EDL67276.1| threonyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 642

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 159/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +R + +  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFVRSKLDEYGYQEVKGPLIMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSEN-REYALKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   N + + Y   +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIFCTESQIQEEVTNCIKMVY-DTYQTFGFDNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + M+ P                I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQSLESMEIPY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  L+NI        D  +++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAILMNITDKQS---DYVQEVVQKLQKSGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|56696171|ref|YP_166527.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|73919826|sp|Q5LTX8|SYT_SILPO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56677908|gb|AAV94574.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 648

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 144/402 (35%), Gaps = 56/402 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q R G +E++ P +    LW  SG ++ Y +
Sbjct: 260 MQEEAPGQIFWHPNGWTIYTTLQDYMRRQQRRGGYVEVNTPQVVDRKLWEASGHWEKYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    S    F+ +L + ++ LG +   ++    P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CAEDQIESETAEFIDFLSMIYKDLGFEKFSVKFSDRPDTR 437

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAA 258
            G D   +    A    T+    +  ++   P E   +    + +  ++I   W      
Sbjct: 438 AGSDAVWDKAEAALLSATRAAGIEPELN---PGEGAFYGPKLEFVLTDAIGRDWQCGTHQ 494

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSY 317
              V        LPE                        + AT+ GADG  H  V +   
Sbjct: 495 VDFV--------LPER-----------------------LDATYIGADGAKHRPVMLHRA 523

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G+      ++   H GK   W   +AP ++ + +I +      D   ++ A L   G 
Sbjct: 524 TLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITSE---ADDYVREVVAELCAAGV 577

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               D   E+I  +     +   P+ + VG + V +  V ++
Sbjct: 578 RAEADTRNEKINYKVREHSVGKVPVILAVGHREVEERTVSVR 619


>gi|312984108|ref|ZP_07791455.1| threonine--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|310894462|gb|EFQ43537.1| threonine--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 644

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 160/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQTEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N  AH +      EK+   L+K G  V  D+  E++G +
Sbjct: 534 KGAFPTW---LAPIQAEIIPVNNDAHGEY----AEKVRQELAKRGFRVEVDNRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + + +  V ++   T      SL + IN
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLTDFIN 631


>gi|161503559|ref|YP_001570671.1| threonyl-tRNA synthetase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864906|gb|ABX21529.1| hypothetical protein SARI_01637 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 622

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVI 605


>gi|321252491|ref|XP_003192424.1| threonine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317458892|gb|ADV20637.1| Threonine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 771

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP+G +  + +   I+EE  + G  E+  P + +A+LW  SG + +Y ++M +
Sbjct: 380 SPGSAFFLPMGMRIYNTLMTFIKEEYFKRGFSEVGSPNIFNANLWKTSGHWQNYAEDMFQ 439

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L    D+  +  P +      IF +  +SY+ LP  F +  +  R+E      G+ R R 
Sbjct: 440 LKVDEDQFAL-KPMNCPGHCLIFDARERSYKELPLRFAEFGVLHRNEASGALSGLTRVRR 498

Query: 155 FLMKDAYSFDLTPE 168
           F+  DA+ F  TP+
Sbjct: 499 FVQDDAHIF-CTPD 511


>gi|258623264|ref|ZP_05718271.1| threonyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|262173542|ref|ZP_06041219.1| threonyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|258584450|gb|EEW09192.1| threonyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|261890900|gb|EEY36887.1| threonyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 642

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S   M+ P                I E   A Y    +     L
Sbjct: 433 ----EIWDKSEQALIDSLKAMEIPF--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D   ++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAHEVAQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|150007315|ref|YP_001302058.1| threonyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|255014060|ref|ZP_05286186.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|256839604|ref|ZP_05545113.1| threonyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|166225472|sp|A6L9S2|SYT_PARD8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149935739|gb|ABR42436.1| threonyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|256738534|gb|EEU51859.1| threonyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 651

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 153/413 (37%), Gaps = 63/413 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  + 
Sbjct: 261 KGLPMWLPKGTALRLRLQEFLRRIQARYNYQEVMCPPIGNKLLYITSGHYAKYGKDSFQP 320

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      I+++  +SY++LP    +     R E      G+ R R
Sbjct: 321 IHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  +  +      +F  +  ++   +              I L
Sbjct: 381 SFTQDDAHIF-CRPDQVKQEFLNVMDIISIVFKTMNFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK   +  E
Sbjct: 426 RDKVNREKYIGSD-----------------------ENWEKAEQAIVEACEEKGLKAKIE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + GAD + H  V +     
Sbjct: 463 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMIHRAPF 522

Query: 320 GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           G+M R VA +IE +  GK  +W   + P ++ ++ I    +   D   +I   L      
Sbjct: 523 GSMERFVAVLIEHTA-GKFPLW---LTPEQVCIMPI---SEKFNDYAWQIARELGNQEIR 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              DD  E+IG +    +L   P  +IVG K   +S+V ++ +  G +  M +
Sbjct: 576 AIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENSEVSVRKQGEGDKGSMKI 628


>gi|292655832|ref|YP_003535729.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291370664|gb|ADE02891.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 643

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 164/420 (39%), Gaps = 59/420 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G++ LD +    ++     G   +  P L   +LW +SG Y++Y  +M  L 
Sbjct: 262 GLPLYQPNGKRILDELADYAKQLNLDAGYDPVETPHLFRTELWKKSGHYENYVDDMF-LL 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF     SYR+LP  +++    +R E R    G+ R   F 
Sbjct: 321 DVNDEEYGLKPMNCPGHATIFDQQSWSYRDLPVRYFEDGKVYRKEQRGELSGLSRVWSFT 380

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVL 213
           + D + F + P+  +   N +  + L +F   GL    ++  R +   +G D       +
Sbjct: 381 IDDGHLF-VRPDQIEDEINLIIDNILTVFDTFGLDAEVALATRPDKS-VGSD------EI 432

Query: 214 ADTGETQVFCSKD--FMDFPIPSENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +  ETQ+    D   +D+ I + +  F     D    +++  +W  P            
Sbjct: 433 WEQAETQLRAVLDDSGIDYGIEAGDGAFYGPKIDFAFKDALGRKWDGPTVQLD------- 485

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVA 326
                               F    ++ L    T+ G D +DH   M    + G+     
Sbjct: 486 --------------------FNMPDRFDL----TYTGEDNEDHQPVMIHRALYGSYERFF 521

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            V+    +GK   W   +AP ++ ++ I + DQ+     +K+   L+    D+  +D   
Sbjct: 522 MVLIEHFNGKFPFW---LAPEQVRILPI-SDDQIG--YAKKLQYELNDFRVDI--EDRSW 573

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +G +   A     P  VIVG     D  + ++ R     +D+S+E   ++    +   R
Sbjct: 574 TLGRKIREAQTDRVPYMVIVGGDEEEDGTISVRDRKEREAKDVSVEAFRDHLRSEYDEKR 633


>gi|148643274|ref|YP_001273787.1| threonyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|166225460|sp|A5UMJ1|SYT_METS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148552291|gb|ABQ87419.1| threonyl-tRNA synthetase, ThrS [Methanobrevibacter smithii ATCC
           35061]
          Length = 608

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 160/426 (37%), Gaps = 88/426 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP----------TLQSADLWVESGRYD 87
           G   W P G+   D +   +       GA+ +  P           + +A       R D
Sbjct: 215 GNLKWFPKGRLVRDLLADYVYNLVVDQGAMPIETPIFYDLDNEAINVHAAKFGERQYRTD 274

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPR 146
           +    MLR A        +G     VM D F +    ++NLP   Y++    FR E +  
Sbjct: 275 TKKNLMLRFA------CCFGAFR--VMADPFIT----WKNLPAKLYELSTYSFRFEKKGE 322

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F M D +SF      +   ++K                  M  ++G +  D
Sbjct: 323 VVGLKRLRAFTMPDFHSFCADMNSTLEEFSK---------------QTDMCIQTG-VDLD 366

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +++E I  A         +KDF D     EN D             W   Y+    +   
Sbjct: 367 VNYEIIFRA---------TKDFYD-----ENKD-------------WM--YSIGKKIGKP 397

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-----------MSATFKGADGKDHY-VQ 313
            L + LPE K   +  I+   I Y G     P              T+ G DGK+HY   
Sbjct: 398 VLLEILPERKHYWSCKIDFAAIDYLGRPIENPTVQIDVESGKRFDITYLGEDGKEHYPTI 457

Query: 314 MGSYGIGAM-RVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +     G++ RV+ +++E +    D K  + P  ++P ++ +I +   D   +D   ++Y
Sbjct: 458 LHCSPTGSIERVICSLLEKTAIELDEKAPMLPTWLSPIEVRIITV-GEDH--KDFANELY 514

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +++     V  DD  E +G +   A     P   +VG          +  R TG + DM
Sbjct: 515 DKINAENIRVDVDDRDESVGKKIRNAATEWIPYIFVVGDNEKESGVFSVTVRETGEKVDM 574

Query: 430 SLEEVI 435
           +++E+I
Sbjct: 575 TVDELI 580


>gi|51102322|gb|AAT95874.1| prolyl-tRNA synthetase [Naegleria gruberi]
          Length = 513

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 127/338 (37%), Gaps = 63/338 (18%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E +M   +   IKS+R+LP    Q     R E +     +RSREF  ++ 
Sbjct: 85  DEPIALRPTSETIMYPSYAKWIKSHRDLPLKLNQWTNVVRWEFKHAVPFIRSREFYWQEG 144

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           +S     E +K     +   Y R +  +   ++P                ++     E +
Sbjct: 145 HSAFKNFEQAKTEVYDILELYKRTYEEI--LAVP----------------VIKGKKTEAE 186

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   DF         T  +  I  N                                 R
Sbjct: 187 KFAGADF--------TTTIEAFIPTN--------------------------------GR 206

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++     + G  +S      F+  D K   V   S+G+ + R +  +I    D KG++ 
Sbjct: 207 AVQAATSHHLGQNFSRMFKIEFEAEDKKSKLVYQNSWGL-STRSLGVMIMVHGDDKGMVL 265

Query: 341 PDSVAPFKISLINI--KAHDQVCRDACEK-IYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           P  VA  ++ LI +  K  D    +   K I+A+L + G  +  DD  E+  G ++   +
Sbjct: 266 PPRVAFTQVVLIPLYFKNKDNSELETKSKTIFAQLEENGVRIKLDDRLEKTPGWKYNYWE 325

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G PL++ +G K + +    +  R  G +  + LE++
Sbjct: 326 LRGVPLRIEIGPKDLENGVAMLCRRDNGEKWSVPLEQL 363


>gi|48478436|ref|YP_024142.1| prolyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|74579482|sp|Q6KZA3|SYP_PICTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|48431084|gb|AAT43949.1| prolyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 466

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 19/211 (9%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--------SARGIEVGHIF 288
           +++ DI S  SI E+   PY    ++     +D  P  K          S R +++G I 
Sbjct: 172 SEYMDIWS--SIAEKLCLPY----NIDMRPDWDKFPGAKYTLAFDTLMPSGRSLQIGTIH 225

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            +G  ++      +   +G   YV   ++G+   R++AAVI    D  G+I P S+AP +
Sbjct: 226 EYGENFARNYDIKYLDINGDLKYVSQTTFGLSE-RLLAAVIGIHGDDTGLILPASIAPVQ 284

Query: 349 ISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVI 405
             +I I  K+  +V  D   KI + L  +      D       G ++   ++ G PL++ 
Sbjct: 285 AIIIPIPGKSFKEVL-DYSGKILSMLKDINVRAEIDSRENYTPGYKYNDWEMRGVPLRIE 343

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +GS+ +  S V +  RL   R ++S++E+ N
Sbjct: 344 IGSREMESSTVTVVSRLNKKRLNISIKEINN 374



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
           KG+  WLP G K +  ++ IIR+  +     E+S P L + + L  E      +  E+  
Sbjct: 29  KGMNVWLPYGLKIMRLIDNIIRDNVDNKSFQEVSFPVLITRSQLETEFEHIKGFENEIYW 88

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +++ D  +   PT E  M  +F   I+S+++LP   YQI   +R E +     +R
Sbjct: 89  VTKGGSEKLDIELALRPTSESAMYTMFPLWIRSHQDLPLKIYQIVSVYRYETKHTRSFIR 148

Query: 152 SREFLMKDAYS 162
            RE    +A++
Sbjct: 149 VREIHFFEAHT 159


>gi|73662391|ref|YP_301172.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761534|sp|Q49YB4|SYT_STAS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72494906|dbj|BAE18227.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 645

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 169/407 (41%), Gaps = 45/407 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVMANVDLYKTSGHWDHYQEDMFPTM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ + M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDEYEEMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++    + +++    ++   R         LS+      D
Sbjct: 382 TLNDAHIF-VRPDQIKEEFKRVVNLIIDVYNDFNFENYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP 272
             + + +   D M     S   +  D + L+   +I E   A Y    DV  +    ++ 
Sbjct: 427 PEDKEKYFDDDEMWIKAESMLKEAVDELGLDYEEAIGE--AAFYGPKLDVQVQT---AMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIE 330
           + + +S   ++    F    K+ L    T+ G DG+ H   +   G+ +   R VA + E
Sbjct: 482 KEETLSTAQLD----FLLPQKFEL----TYIGNDGEQHRPVVIHRGVVSTMERFVAFLTE 533

Query: 331 SSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   KG  +P  +AP ++ +I  N+  H     D    I   L   G  V  DD  E++
Sbjct: 534 ET---KG-AFPTWLAPKQVEIIPVNVDLH----YDYARLIQDELKSQGVRVEIDDRNEKM 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   A +   P Q++VG K V + +V ++   +  +E +  +E I
Sbjct: 586 GYKIREAQMQKIPYQLVVGDKEVENKEVNVRKYGSQDQETLEKDEFI 632


>gi|88859310|ref|ZP_01133950.1| threonyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88818327|gb|EAR28142.1| threonyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 636

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 142/404 (35%), Gaps = 64/404 (15%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +RE+       E+  P +    LW +SG +D Y   
Sbjct: 257 QEEAPGMVFWHNDGWSIYRELEDFVREKLREYKYEEVKGPLMMDRSLWEKSGHWDKYADA 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M        +  I  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTVSEKREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  T E      +         +   G + I ++  + P          
Sbjct: 376 VRGFTQDDAHIF-CTEEQVMDEVSACIKMVYDTYETFGFEKIVVKLSTRP---------- 424

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD--VHNEKLFD 269
                                  EN   DD          W     A ++   HN   FD
Sbjct: 425 -----------------------ENRIGDDAT--------WDQSEKALAEALTHNGIEFD 453

Query: 270 SLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYG 318
            LP         IE      +   +  GT    ++LP  + AT+   + +     M    
Sbjct: 454 YLPGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFALPGRLGATYVAENNERRTPVMIHRA 513

Query: 319 I-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           I G++     ++   + G   ++P  +AP ++ ++NI        D C  I  +L+K+G 
Sbjct: 514 ILGSIERFIGILTEEYAG---LFPTWLAPKQVVVMNITDKQA---DYCHNIVEKLNKLGF 567

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               D   E+IG +     L   P  ++VG K V   +V ++ R
Sbjct: 568 RACADLRNEKIGFKIREHTLKRIPYLLVVGDKEVEQEEVAVRTR 611


>gi|312794079|ref|YP_004027002.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181219|gb|ADQ41389.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 647

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/410 (20%), Positives = 165/410 (40%), Gaps = 50/410 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K L  +   + +E+ + G +    P +  +DL+  SG +D Y   M  +
Sbjct: 264 QGLPLLMPKGAKILQILQRFVEDEEEKRGYLLTKTPYMAKSDLYKISGHWDHYRDGMFVI 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +  ++ +   P        I+ S  +SYR+LP  + +    FR+E      G++R R+F
Sbjct: 324 EEDENEVLALRPMTCPFQFLIYNSKQRSYRDLPIRYSETSTLFRNESSGEMHGLIRVRQF 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+     P+  +  +  +      I   LG+++            D+ + F     
Sbjct: 384 TLSDAHII-CRPDQVEEEFKGVLDLIQYIMKTLGIEN------------DIWYRFSRWDP 430

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD-----DIISLNSIVEQWTAP-YAATSDVHNEKLF- 268
             + +      ++D P   E T+ D     D + +N    +  A  Y    D+  + ++ 
Sbjct: 431 NNKEK------YIDNPEAWEKTENDMKNILDKLGINYKEAKGEAAFYGPKLDIQFKNVYG 484

Query: 269 --DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVV 325
             D++          I V   F    ++ +    T+   DG K   + +    IG     
Sbjct: 485 KEDTI----------ITVQIDFALAERFDM----TYVDRDGQKKRPIIIHRSSIGCYERT 530

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++   ++G   +W   ++P +I +I +  +     +  + +   L + G  V  D   
Sbjct: 531 LAMLIEKYNGAFPLW---LSPVQIRVIPVSDN---FNEYAKNVARILKENGFRVEEDYRS 584

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E +G +   A L   P  VIVG K   ++ V ++ R  G     ++E+ I
Sbjct: 585 ETVGYKIRDAQLQKIPYMVIVGEKEQKENTVAVRDRKKGDLGSFTIEDFI 634


>gi|307564422|ref|ZP_07626963.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307346782|gb|EFN92078.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 650

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/418 (20%), Positives = 149/418 (35%), Gaps = 65/418 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           KG+  WLP G +    +  ++R+        E+  P + S +L++ SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQDMLRKLLKPYNYQEVITPGIGSKNLYITSGHYAHYGKDAFQP 322

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IQTPEEDEEYMLKPMNCPHHCEVYAYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+  K  +       L++F   G ++   +              I L
Sbjct: 383 NFTQDDAHIF-VRPDQVKAEFENNIDIILKVFKTFGFENYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  +   +   D                       E W     A      EK   +  E
Sbjct: 428 RDPEDKDKYIGDD-----------------------EVWNESEQAIKQACKEKGLKATVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLPMS--ATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 LGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPQRFHLEYTAEDNTKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   +S        +   D   K+  +L     
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPVS--------EKYNDYARKVKQQLDASDV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               DD  E++G +    +L   P  V+VG K  ++  V ++ +  G +  M ++  I
Sbjct: 577 RALIDDRNEKVGRKIRDNELKRIPYMVVVGEKEAAEGLVAMRKQGGGEQSTMPVKAFI 634


>gi|296114661|ref|ZP_06833313.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978757|gb|EFG85483.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 603

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 6/174 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G   W P G      + A +R  Q     +E++ P +    LW  SG ++ +G+ M  
Sbjct: 221 APGAVFWHPNGWTLFQTLLAYLRARQQAENYVEINTPDIMDLSLWQASGHWEKFGENMF- 279

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             +   +     P +      +FR  +KSYR+LP    +     R E      G+MR R 
Sbjct: 280 TTETEGRTYALKPMNCPGGVQVFRHGLKSYRDLPLRMAEFGKVHRFEPSGALHGLMRVRA 339

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           F   DA+ F  TPE  +    ++    L I+   G   + ++    P   +G D
Sbjct: 340 FTQDDAHIF-CTPEQMEAETQRICHLVLSIYKDFGFDDVRIKFSDRPEKRVGSD 392


>gi|331703337|ref|YP_004400024.1| Proline tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801892|emb|CBW54045.1| Proline tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 474

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 156/392 (39%), Gaps = 73/392 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKEKDHIEGFSPEIAT 94

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    +K +       PT E VM D F + I SYR+LP  + Q    +++    RP    
Sbjct: 95  VTKVGEKQLEENLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRP---F 151

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+ EFL ++ ++          SYN+     L+I +               I    + E
Sbjct: 152 LRTSEFLWQEGHTV-------HSSYNEAEDFCLKILN---------------IYEKFAKE 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            ++L       V C K        +E   F                 A   D +      
Sbjct: 190 ILLLP------VICGK-------KTEKEKF-----------------AGAKDTYT----- 214

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E+     + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I
Sbjct: 215 --IESLMFDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALI 271

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D  G++ P  ++P +I +I IK  +Q+     E I  +LS    DV  D+  +  G
Sbjct: 272 MTHSDDNGLVLPSKISPIQIQIIQIKNTEQI-DQVVEIIKDKLSDYRIDV--DNSDKSFG 328

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + + A++ G P+++ +G + + ++++ I  R
Sbjct: 329 FKISEAEIKGIPIRIEIGPRDLENNQITISRR 360


>gi|163840211|ref|YP_001624616.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162953687|gb|ABY23202.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 453

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 161/414 (38%), Gaps = 40/414 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +  +  EE  R+G   +  P L   +L+  SGR+  + ++M    
Sbjct: 72  GLPLWLPDGAVIRTELEKLAVEESLRSGYQRVYSPVLAKRELYERSGRWAKFSEDMFPPL 131

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++ ++  P +      +F +   S+R LP  + ++   FR EL     G+ R R+  
Sbjct: 132 RIGNEELVLRPANCPHHAMLFAARPHSWRELPIRYAELGSMFRSELSGVLSGLSRVRQIN 191

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           + D + F  TPE ++    +   +    +  LGL+    R  +   G   +      A  
Sbjct: 192 LDDCHVF-CTPEQAQSEVVRGIQAISAGYSILGLEPDYFRLSARDSGTSFAGSASDWA-A 249

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E+ +  + D +  P                 V    A Y    DV   + FD+  + + 
Sbjct: 250 AESVLKAALDELGLPY--------------RRVAGEAAFYGPKIDV---QFFDAAGKEET 292

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDG 335
           +S   ++    F    ++ L     + G DG  H   M   G+ GAM    A++   H G
Sbjct: 293 LSTVQLD----FVQPERFDL----AYIGDDGAAHRPMMVHRGLFGAMERTVALLIEKHQG 344

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           K   W   +AP +++++ + +  Q  R  C +I A+    G  V  D  G  +GS+    
Sbjct: 345 KMPPW---LAPVQLAVLPV-SDTQAAR--CAEISAQALAAGIRVIVDHDG-SVGSRVRKT 397

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR--EDMSLEEVINYASHRFSNNRP 447
                    +VGS+     K+ +   + G R  + + + E I     +     P
Sbjct: 398 SQRRVSWLAVVGSQESESGKLSLS--IPGARPAQLLPVTEAIELMRQKIQRREP 449


>gi|170575688|ref|XP_001893343.1| threonyl-tRNA synthetase, cytoplasmic [Brugia malayi]
 gi|158600735|gb|EDP37841.1| threonyl-tRNA synthetase, cytoplasmic, putative [Brugia malayi]
          Length = 685

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/420 (19%), Positives = 164/420 (39%), Gaps = 45/420 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   W P G    + +   IR+E  + G  E+  P + ++ LW +SG ++ Y 
Sbjct: 293 FFHPLSPGSAFWYPKGAHIYNTLCNFIRKEYRKRGFTEVISPNMYNSKLWEQSGHWEHYS 352

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M ++ D   +     P +      ++    +++  LP  +    +  R+E+     G+
Sbjct: 353 DNMFKI-DIEKETFGLKPMNCPGHCLMYSHMPRTHNELPLRYADFGVLHRNEMSGALTGL 411

Query: 150 MRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            R R F   DA+ F   D   E      + +  +YL +F      ++  R E G +G   
Sbjct: 412 TRVRRFQQDDAHIFCRQDQVVEEIMGCIDFLKYAYLDVFGFTFKLNLSTRPEVGYLGD-- 469

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNE 265
                                    I + N   D +  +LN+   +W          +  
Sbjct: 470 -------------------------IETWNAAEDKLREALNASGHKWELN-PGDGAFYGP 503

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           K+  ++ +  R   +   +   F    ++ L   + F   + +   V +    +G++  +
Sbjct: 504 KIDITIQDALRRLHQCATIQLDFQLPVRFDL---SYFDENNERQRPVMIHRALLGSIERM 560

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            A++  ++ GK   WP  ++P +  +I + ++ +   R   ++IY    +V  DV   D 
Sbjct: 561 TAILAENYGGK---WPFWLSPRQAKVITVHESQNDYGRKVQQEIYEAGFEVEFDV---DS 614

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +  Q   A +  F   ++VG     +  V ++ R   +R ++ LE++I     RF N
Sbjct: 615 SDTLNKQIRNAQIAQFNFILVVGPAEARNGTVNVRTRDNAVRGEVKLEDLIE-KFKRFQN 673


>gi|94971761|ref|YP_593809.1| threonyl-tRNA synthetase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553811|gb|ABF43735.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 659

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 93/463 (20%), Positives = 164/463 (35%), Gaps = 66/463 (14%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +YF  + +   RD  +   +L L + +      G+  W P G      +   +REE  + 
Sbjct: 244 EYFAKLEEAKKRDHRVLGKQLDLFS-IQELAGPGLIFWHPKGGIIRKEMEDWMREEYLKR 302

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   DLW  SG    Y +      + +D   +  P +      I+R  ++S
Sbjct: 303 GYSLVVTPHVARTDLWKISGHTGYYKQNFFTPMELDDAEYMLKPMNCPGHVLIYRDQLRS 362

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVM----RSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           YR+LP    ++   +R E   R GVM    R R F   DA+ F  TP   +   +     
Sbjct: 363 YRDLPMRLGEMGTVYRYE---RSGVMHGLLRVRGFTQDDAHIF-CTPSQIEDEISGCIDF 418

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + + H  G                                     F +F +     D +
Sbjct: 419 AISVLHTYG-------------------------------------FNEFKVELSEWDPN 441

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEK--LFDSLPENKRVSARGIEV------GHIFYFGT 292
           D  S     EQW     +   V + +   + S+P         I+V      G ++   T
Sbjct: 442 DRKSFIGTDEQWNLAQGSLKKVLDARGIPYKSMPGEAAFYGPKIDVKLVDAIGRLWQLST 501

Query: 293 ---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAP 346
               ++LP      + G DGK H   M    + G++     V+   + G   +W   ++P
Sbjct: 502 VQFDFTLPQRFELEYVGEDGKRHQPLMVHRALYGSIERFFGVLIEHYAGAFPVW---LSP 558

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +  L+ I    +   +   K+   L   G  V  D   E++ ++     L   P  ++V
Sbjct: 559 VQTVLVPI---GEKHLEYANKVGDVLKAKGIRVEVDGRNEKMNAKIREHALQKVPFILVV 615

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           G K    + V ++ R     E + L+  +       +  +P L
Sbjct: 616 GDKEAEATSVNVRTRGKDKTETVPLDSFVERIEKLIAEKKPTL 658


>gi|332292776|ref|YP_004431385.1| prolyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170862|gb|AEE20117.1| prolyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 492

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F    GK  +V   S+G+ + R++ A+I +  D +G+
Sbjct: 234 GKALQAGTSHFLGQNFAKAFDVKFTTNQGKQEHVWATSWGV-STRLMGALIMTHSDDQGL 292

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P ++APF++ ++ I K  +Q+        +I   L   G  V +D+    + G +F  
Sbjct: 293 VLPPNLAPFQVVIVPIYKGQEQLDAISQVANEIVQDLKLHGVSVKFDNRDTHKPGWKFNE 352

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +L G PL++ +G K +    VE+  R T  +E ++ E ++
Sbjct: 353 YELKGVPLRIGIGPKDLEKRTVELARRDTLTKEFVAKENIV 393



 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 116 EEELIVRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEG 174

Query: 161 YSFDLTPE 168
           ++   T +
Sbjct: 175 HTAHATKQ 182


>gi|187929057|ref|YP_001899544.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|238691850|sp|B2UGJ8|SYT_RALPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187725947|gb|ACD27112.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 635

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 151/401 (37%), Gaps = 56/401 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I ++S G   W P G      +   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEYSPGTVFWHPKGWTLWQEIEQYMRRVYRENGYQEVKGPQILDKTLWEKTGHWDKYRE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + +   +     P +      I++  IKSYR+LP  F +     R+E      G+M
Sbjct: 315 NMF-ITESEKREYALKPMNCPGHILIYKQGIKSYRDLPLRFGEFGACHRNEPSGGLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDL 206
           R R F   D + F    E    +    F + L +++   G   I  +  + P   IG + 
Sbjct: 374 RVRGFTQDDGHIF--CTEDMIQAEVTAFTTLLQKVYKDFGFTEILYKLSTRPDKRIGTEE 431

Query: 207 SHEFIVLA-DTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVEQWTAPYAATSDV 262
           S +    A   G     C  +++    P E   +   I     +++  QW      T  V
Sbjct: 432 SWDRAEAALAEGLRASGCEFEYL----PGEGAFYGPKIEYVLKDALGRQWQ---CGTIQV 484

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGA 321
                  +LPE                        + A F G DG  H  + +    +G+
Sbjct: 485 DP-----NLPER-----------------------LDAEFVGEDGARHRPIMLHRAIVGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVF 380
           +     ++   + G    W   ++P ++ +++I  +H +  +   +     L K G    
Sbjct: 517 LERFIGILIEQYAGALPTW---LSPVQVVVLSITDSHAEYAQSVAQS----LQKQGFRAV 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   E+IG +     +   P QV+VG K   +++V ++ R
Sbjct: 570 VDLRNEKIGYKIREHSVQKVPYQVVVGDKERDENQVAVRAR 610


>gi|94986656|ref|YP_594589.1| threonyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|122988800|sp|Q1MRV8|SYT_LAWIP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94730905|emb|CAJ54268.1| Threonyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 642

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/413 (20%), Positives = 169/413 (40%), Gaps = 60/413 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R+E  + G   +  P L   +LW +SG Y +Y + M  
Sbjct: 257 APGMVFWQPNGMLLRTILEDFLRKEHLKRGYQLVQGPQLLRRELWEKSGHYTNYKENMYF 316

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                D   +YG  P +      ++++H+ SYR LP  ++++ +  R E      G++R 
Sbjct: 317 TEIEED---VYGIKPMNCVSHMLLYKTHLHSYRELPQRYFELGVVHRHEKSGVLHGLLRV 373

Query: 153 REFLMKDAYSFDLTPEGSKH-----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           R+F   DA+   +  +  +      ++ +  +S     + + + + P ++    IG D +
Sbjct: 374 RQFTQDDAHIICMPEQLEEEIIQVITFVRDLMSLFDFNYHIVISTRPEKS----IGSDYA 429

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   LA +   Q   + + ++ P    + D               A Y    D+   K+
Sbjct: 430 WE---LATSALIQ---AVEKINLPYSINHGD--------------GAFYGPKIDI---KV 466

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D++    ++S               ++LP      + G DGK H   M    I G++  
Sbjct: 467 TDAIGREWQLST----------IQCDFTLPERFELEYVGQDGKRHQPVMIHRAIFGSIER 516

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  + P ++ ++ +           + +Y++L  VG  V  D  
Sbjct: 517 FIGILTEHYAGA---FPTWLTPIQVKILTVT---DAQTPFAKHVYSQLQDVGIRVGLDIR 570

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            E++G +   A L   P  +++G K +    V ++ R TG  E++ ++ V  +
Sbjct: 571 NEKLGFKIREAQLAKIPYILVIGQKELELESVNVRLR-TG--ENIGMQSVTEF 620


>gi|50952758|gb|AAT90291.1| putative threonyl-tRNA synthetase [uncultured proteobacterium
           eBACred25D05]
          Length = 650

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 145/400 (36%), Gaps = 52/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    +   +R +Q   G +E++ P +    LW ESG +D Y +
Sbjct: 260 MQEEAPGQIFWHPNGWKIYTLLQDYMRRQQEVGGYVEVNTPQVVDRKLWEESGHWDKYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      ++   IKSYR+LP    +     R E    
Sbjct: 320 HMFIVEVDEEHAREKSINALKPMNCPCHVQVYNQGIKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   DA+ F    E    S  K F+++L  ++  LG     ++    P   
Sbjct: 380 LHGIMRVRGFTQDDAHIF--CQEDQIESETKKFINFLSGVYKDLGFPKFAVKFSDRPKNR 437

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDFD---DIISLNSIVEQWTAPYAATS 260
             S +    A+        S  F DF + P E   +    + +  ++I   W        
Sbjct: 438 AGSDDVWDKAEGALKSATTSAGF-DFELNPGEGAFYGPKLEFVLTDAIGRDWQCGTLQVD 496

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGI 319
            V        LP+                        + A F G DG+ H  V +    +
Sbjct: 497 FV--------LPDR-----------------------LDANFIGEDGQKHRPVMLHRAVL 525

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+      ++  +  G+   W   +AP ++ + +I        + C +I   L  VG   
Sbjct: 526 GSFERFIGILIENFAGRLPFW---LAPRQVVVASIVTD---ANEYCTEIVDALKLVGIRA 579

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             D   E+I  +     +   P  + +G++ V D  + ++
Sbjct: 580 ESDLRNEKISYKVREHSVAKVPTILAIGNREVEDRAITVR 619


>gi|82524022|emb|CAI78700.1| Threonyl-tRNA synthetase [uncultured Flavobacteriaceae bacterium]
          Length = 644

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 157/397 (39%), Gaps = 53/397 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + +   +++ Q + G   +  P +   +L+V SG Y  YG +  + 
Sbjct: 259 QGLPLWLPKGAALRERLEDFLKKAQKKAGYEMVVTPHIGQKELYVTSGHYAKYGADSFQP 318

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               + D+  +  P +     +I+ +   SY++LP  + +    +R E      G+ R R
Sbjct: 319 IKTPKEDEEFLLKPMNCPHHCEIYNNSQWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVR 378

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS----IPMRAESGP---IGGDL 206
            F   DA+ F + PE     +  +    L +F  LG ++    + +R    P   IG   
Sbjct: 379 GFTQDDAHLFCM-PEQLDQEFKNVIDLVLYVFGSLGFENFTAQVSVRDPENPDKYIG--- 434

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E        +  +  +KD        +  DF        IVE   A Y    D     
Sbjct: 435 --EVENWEKAEQAIINAAKD--------KGLDF-------VIVEGEAAFYGPKLDFM--- 474

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
           + D+L        R  ++G I      Y+LP     T+KG+D + H  V +     G++ 
Sbjct: 475 VKDAL-------GRKWQLGTI---QVDYNLPERFDLTYKGSDNELHRPVMIHRAPFGSIE 524

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A++     G   +W   + P +  ++ I    +      EK+   L         D+
Sbjct: 525 RFIAILLEHTAGNFPLW---LMPKQAIILCI---SEKYEKYAEKVLNLLENNEIRALVDN 578

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             E IG +   A++  +P  +I+G    S++K+ ++ 
Sbjct: 579 RNETIGKKIREAEMQKYPYMIIIGENEESENKISVRQ 615


>gi|317487453|ref|ZP_07946240.1| threonyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316921312|gb|EFV42611.1| threonyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 646

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 162/412 (39%), Gaps = 61/412 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  WLP G      +   +R E  + G   +  P +   +LW +SG Y +Y + M  
Sbjct: 261 AAGMVFWLPKGMLLRTILEDFLRREHIKRGYQLVQGPQVLRRELWEQSGHYANYRENMYF 320

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                D   +YG  P +      I+ +H++SYR LP  ++++ +  R E      G++R 
Sbjct: 321 TEIEGD---MYGIKPMNCVSHMLIYNAHLRSYRELPQRYFELGVVHRHEKSGVLHGLLRV 377

Query: 153 REFLMKDAYSFDLTPEGSKH------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           R+F   DA+     PE  +       +  +  ++     +R+ + + P +A    IG D 
Sbjct: 378 RQFTQDDAHII-CAPEQLEDEIIGVIALVRDLMALFGFQYRVVISTKPAKA----IGSDE 432

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + E    A     +    +  + + I + +  F                Y    DV   K
Sbjct: 433 AWELATNALIKAVE----RANLSYTINAGDGAF----------------YGPKIDV---K 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           + D++    ++S               ++LP      + G DG+ H   M    I G++ 
Sbjct: 470 VTDAIGREWQLST----------IQCDFTLPERFELEYVGQDGERHRPVMVHRAILGSLE 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWD 382
               V+   + G    +P  +AP +  ++ +  A +    +ACE     L K G     D
Sbjct: 520 RFIGVLTEHYAGA---FPTWLAPVQAKILTVTDAQNAFAEEACEA----LRKQGIRAEVD 572

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              E++G +   A L   P  ++VG K V    V ++ R        SL+EV
Sbjct: 573 TRNEKLGFKVREAQLAKIPYILVVGDKEVEARSVNVRLRTGENLGVKSLDEV 624


>gi|237744663|ref|ZP_04575144.1| threonyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431892|gb|EEO42104.1| threonyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 637

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 177/433 (40%), Gaps = 52/433 (12%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    + ++  G   +LP G    + +  + R+E  +   +++  P 
Sbjct: 236 EAEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLVDLWRKEHEKAEYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y +E +  ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNY-RENMYTSEIDEVEFAIKPMNCPGGVLAFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TPE  +                +G+ +
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPEQVQDEI-------------IGVVN 400

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           +  +  S   G     E+ +   T   +   S++  D    +     D +     I    
Sbjct: 401 LIDKFYSKLFG----FEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGD 456

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG 307
            A Y    D    K+ D+             +G ++  GT    ++LP     T+ G DG
Sbjct: 457 GAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFNLPERFDVTYIGEDG 500

Query: 308 KDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++   + G   +W   +AP ++ ++ I   +  C    +
Sbjct: 501 EKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVMTI---NDECVPYAK 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +I A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I+   +  
Sbjct: 555 EIMAKLDELGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNIRRFGSKD 614

Query: 426 REDMSLEEVINYA 438
           +   SL+E  NY 
Sbjct: 615 QFSKSLDEFYNYV 627


>gi|163755863|ref|ZP_02162980.1| prolyl-tRNA synthetase [Kordia algicida OT-1]
 gi|161324034|gb|EDP95366.1| prolyl-tRNA synthetase [Kordia algicida OT-1]
          Length = 492

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 150/354 (42%), Gaps = 67/354 (18%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  GK M+    + ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E    
Sbjct: 102 DKEGKLMVDPNAKLEEELIVRPTSEAIIWNTYKNWIQSYRDLPILINQWANVVRWE---- 157

Query: 147 FGVMRSREFLMKDAYSFDLTPEG-SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
              MR+R FL    +   L  EG + H+     V+          +S+ M+         
Sbjct: 158 ---MRTRLFLRTAEF---LWQEGHTAHATKDEAVA----------ESLQMQK-------- 193

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                 V A+  E       DFM  P+         +    +  E+    +A   D +  
Sbjct: 194 ------VYAEFAE-------DFMAMPV---------VKGAKTESER----FAGALDTYT- 226

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
              ++L ++     + ++ G   + G  ++      +   +GK   V   S+G+ + R++
Sbjct: 227 --IEALMQD----GKALQAGTSHFLGQNFAEAFDVKYATKEGKQELVWATSWGV-STRLM 279

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWD 382
             +I +  D  G++ P  +AP ++  + I  +++      +K   I   L   G  + +D
Sbjct: 280 GGLIMTHSDDAGLVLPPKLAPIQVVFVPIYKNEEQFEAIAKKVTEISNELKAKGVSIKFD 339

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                + G++FA  +L G PL++ +G++ + +  +EI  R T  ++ ++ E+ +
Sbjct: 340 KRDTLRPGAKFAEWELKGVPLRIALGARDLENGTLEIARRDTFEKQSVAQEDAV 393


>gi|242239483|ref|YP_002987664.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242131540|gb|ACS85842.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 642

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 152/415 (36%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRTEVNSCIKMVYDMYGTFGFEKIAVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  +      P    P E   +   I                     
Sbjct: 432 ----EMWDRAEEDLAAALTENGIPFEYQPGEGAFYGPKIEFT------------------ 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L D L        R  + G +      +SLP  ++A++ G + +     M    I G+
Sbjct: 470 --LHDCLD-------RAWQCGTV---QLDFSLPGRLNASYVGENNERQVPVMIHRAILGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP ++ ++NI        D   ++  +L   G  V  
Sbjct: 518 MERFIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---DYVSELTRKLQDAGIRVKA 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  ++ G K V   KV ++ R       + + EVIN
Sbjct: 572 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSIDVSEVIN 626


>gi|91787975|ref|YP_548927.1| threonyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123059945|sp|Q12BR3|SYT_POLSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91697200|gb|ABE44029.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas sp.
           JS666]
          Length = 635

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 145/391 (37%), Gaps = 60/391 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I  H+ G+  W P G      V   +R+     G  E+  P +    LW ++G +D Y  
Sbjct: 255 IDDHAPGLVFWHPKGWTIWQGVEQYMRKVYQDNGYQEVKGPQVIDKTLWEKTGHWDKYRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      IF+  IKSYR+LP  + +     R+E      G+M
Sbjct: 315 NMF-TTESEKREYALKPMNCPGHILIFKQGIKSYRDLPLRYGEFGQCHRNEPSGGLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDL 206
           R R F   D + F    +  K   +  + + L +++   G K+I  +  + P   IG D 
Sbjct: 374 RVRGFTQDDGHIFCTEEQILKECVD--YTTLLQKVYTDFGFKNIIYKVATRPDARIGSDE 431

Query: 207 SHEFIVLADTGETQVFCS--KDFMDFPI-PSENTDFDDIISL---NSIVEQWTAPYAATS 260
           S       D  E  +  S      +F I P E   +   I     ++I  QW      T 
Sbjct: 432 SW------DKAEQALIESLRASGCEFEISPGEGAFYGPKIEYTLKDAIGRQWQ---CGTM 482

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGI 319
            V       S+PE                        + A + G DG  H  V +    +
Sbjct: 483 QVDF-----SMPER-----------------------LDAEYVGEDGARHRPVMLHRAIV 514

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCD 378
           G++     ++   H G    W   +AP ++S++NI  +  +  R+  +     L   G  
Sbjct: 515 GSLERFIGILIEEHAGALPTW---LAPIQVSVLNITDSQAEYAREVAKT----LQNQGLR 567

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           V  D   E+I  +     L   P  ++VG K
Sbjct: 568 VNLDLRNEKITYKIREHSLQKLPYILVVGDK 598


>gi|67920215|ref|ZP_00513735.1| Threonyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
 gi|67857699|gb|EAM52938.1| Threonyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
          Length = 642

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 153/401 (38%), Gaps = 41/401 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G K    +    R+     G   +  P + + DLW  SG +D Y + M    
Sbjct: 265 GLVFWHPRGAKMRYVIEDYWRKAHLDGGYELLYTPHVANLDLWKTSGHFDFYRENMFDSM 324

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++A    P +       +++ + SYR  P  + ++   +R E      G+MR R F 
Sbjct: 325 KIEEQAYQIKPMNCPFHVLTYKNELHSYREFPLRWAELGTVYRYERSGVLHGLMRVRGFT 384

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L  + +      + ++  +I    G K   +   + P     + E   LA  
Sbjct: 385 QDDAHVFCLPTQIASEILGVLNLTE-KILSDFGFKDYEVNLSTRPDKSVGTDEGWELATQ 443

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +    K + D+        F                Y    D+   K+ D++    +
Sbjct: 444 ALVEALNGKGW-DYIEDKGGGAF----------------YGPKIDI---KIKDAIGRTWQ 483

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
            S   ++          ++LP      +   DG      M    I G++     ++  ++
Sbjct: 484 CSTIQVD----------FNLPERFDMEYVAVDGSRQRPIMIHRAIFGSLERFYGILIENY 533

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   +AP ++ L+ + +  Q+  +  E + A L + G  V  D  GE++G Q  
Sbjct: 534 AGDFPLW---LAPIQLRLLPV-SEAQI--EYGETVVATLKQAGYRVEIDCTGERLGKQIR 587

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            A+L   P+  IVG K V    + I+ R  G    M+L E+
Sbjct: 588 NAELEKIPVVAIVGKKEVETQTLSIRTRQQGDIGTMTLTEL 628


>gi|238027731|ref|YP_002911962.1| threonyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876925|gb|ACR29258.1| Threonyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 635

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 162/424 (38%), Gaps = 53/424 (12%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H  + S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLAKQLDLFHMQEESPGMVFWHPKGWALWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H      +F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGH----VQVFNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE--GSKHSYNKM 177
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F    +      ++N++
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFIAESIAFNEL 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +S   ++   G   I ++    P     + E    A+ G      +       +P E  
Sbjct: 403 AMS---VYKDFGFDQISIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLAWEELPGEG- 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                           A Y    + H   + D+L  + +     +++      G +Y   
Sbjct: 459 ----------------AFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLGAEY--- 496

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   +G+   V +    +G+M     ++   H G    W   +AP +  ++NI A 
Sbjct: 497 ----VAEDNGRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPVQAIVMNI-AE 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +Q   D    +   L K G  V  D   E+I  +     L   P  ++VG K      V 
Sbjct: 549 NQA--DYAGSLAQSLQKQGLRVEADLRNEKISYKIREHALEKVPYLLVVGDKEREAQTVA 606

Query: 418 IKHR 421
           ++ R
Sbjct: 607 VRAR 610


>gi|82751271|ref|YP_417012.1| threonyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123768508|sp|Q2YTA7|SYT_STAAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82656802|emb|CAI81231.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus RF122]
          Length = 645

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  DD  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKTPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|299140628|ref|ZP_07033766.1| threonine--tRNA ligase [Prevotella oris C735]
 gi|298577594|gb|EFI49462.1| threonine--tRNA ligase [Prevotella oris C735]
          Length = 649

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 150/421 (35%), Gaps = 69/421 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +    L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQELLRSLLRPYNYQEVITPGIGGKSLYVTSGHYAHYGKDAFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVYARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+  K  +       L++F      +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPDQVKAEFETNIDIILKVFKTFQFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W     A  +   EK   +  E
Sbjct: 428 RDPKDKEKYIGSD-----------------------EIWEESQNAIREACKEKGLVAREE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLPMSATFK-----GADGKDHYVQMGSY 317
               +  G +        +G  +  GT    Y+LP  A FK       + K   V +   
Sbjct: 465 IGEAAFYGPKLDFMVKDAIGRKWQLGTIQVDYNLP--ARFKLEYTAEDNTKKTPVMIHRA 522

Query: 318 GIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G++    AV+     G   +W  PD VA   IS        +   D  +++      V
Sbjct: 523 PFGSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAKQVSKYFDSV 574

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G     DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M +EE  
Sbjct: 575 GVRAVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEAAEGLVSMRKQGGGEQATMKMEEFA 634

Query: 436 N 436
           N
Sbjct: 635 N 635


>gi|281423114|ref|ZP_06254027.1| threonine--tRNA ligase [Prevotella oris F0302]
 gi|281402450|gb|EFB33281.1| threonine--tRNA ligase [Prevotella oris F0302]
          Length = 649

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 150/421 (35%), Gaps = 69/421 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +    L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQELLRSLLRPYNYQEVITPGIGGKSLYVTSGHYAHYGKDAFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVYARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+  K  +       L++F      +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPDQVKAEFETNIDIILKVFKTFQFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W     A  +   EK   +  E
Sbjct: 428 RDPKDKEKYIGSD-----------------------EIWEESQNAIREACKEKGLVAREE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLPMSATFK-----GADGKDHYVQMGSY 317
               +  G +        +G  +  GT    Y+LP  A FK       + K   V +   
Sbjct: 465 IGEAAFYGPKLDFMVKDAIGRKWQLGTIQVDYNLP--ARFKLEYTAEDNTKKTPVMIHRA 522

Query: 318 GIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G++    AV+     G   +W  PD VA   IS        +   D  +++      V
Sbjct: 523 PFGSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAKQVSKYFDSV 574

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G     DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M +EE  
Sbjct: 575 GVRAVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEAAEGLVSMRKQGGGEQATMKMEEFA 634

Query: 436 N 436
           N
Sbjct: 635 N 635


>gi|302545670|ref|ZP_07298012.1| threonine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463288|gb|EFL26381.1| threonine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 403

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 163/397 (41%), Gaps = 44/397 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G+  WLP G    + +   IR E+ R G   +  P L   +L+  SG +  Y  +M  
Sbjct: 21  GAGLPYWLPDGAAVREALEEYIRAEERRAGYRHVYSPVLGKRELYEVSGHWAHYRDDMFP 80

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             D   + ++  P+       I+RS  +SYR LP    ++   +R EL     G+ R R 
Sbjct: 81  PMDVGGEEVVLRPSLCPHHAVIYRSRARSYRELPLRMAELGGMYRAELSGVLGGLTRVRA 140

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + DA+ F    E              R +  +G++++  R     + GD S +F+  +
Sbjct: 141 IQLNDAHIF-CALEQVAGEVEGALGMIRRAYEAMGIRAVRYRLS---LPGD-SGKFVAGS 195

Query: 215 DTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           +  E  V    + +    +P E    +             A Y    DV   ++ D    
Sbjct: 196 EVWERSVGVLGEVLRRVGVPYEVGKGE------------AAFYGPKIDV---QVADGAGR 240

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIES 331
              +S   ++      FG +Y         GADG  H  V +    IG++ R VA ++E 
Sbjct: 241 EFTLSTVQVDFHQPERFGLQYV--------GADGAKHRPVMVHRSIIGSVERAVAQLVE- 291

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKVGCDVFWDDMGEQIGS 390
            H G    +P  +AP ++ ++ +   +    +A  E+   R  +   D    + G  +G+
Sbjct: 292 VHGGA---FPGWLAPVQVVVLPVSEGEAGHAEAFVERCVERGLRARVD--GPERG-SLGA 345

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   A L+  P QV++G+K  ++ +V +  RL G R+
Sbjct: 346 RVRGARLV--PYQVVIGAKEAAEGQVAL--RLRGGRQ 378


>gi|24213940|ref|NP_711421.1| threonyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|59798590|sp|Q8F6R1|SYT_LEPIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24194795|gb|AAN48439.1|AE011305_9 threonyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 638

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 4/160 (2%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      ++ L +    +   G   W P G    +++   +R E N+ 
Sbjct: 234 QYLFQIEEAKKRDHRKIGKEMDLFS--FQKEGPGFPFWHPKGTILWNSLAEYLRSECNKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+ S
Sbjct: 292 GYQEIKTPAVLSSELWKKSGHWDNFHENMY-FTDIDEEDYALKPMNCPGCSLIYKHHLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP  F +     R EL     G+ R R F   D++ +
Sbjct: 351 YRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIY 390


>gi|311029306|ref|ZP_07707396.1| prolyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 477

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/391 (19%), Positives = 148/391 (37%), Gaps = 77/391 (19%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+   + +    TG   + +P  +  + L  E    + +  E+  +    D+
Sbjct: 44  PYGYALWENIKDALDKRIKETGHENVYMPLFIPESLLQKEKDHIEGFAPEVAWVTHGGDE 103

Query: 103 AM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFL 156
            +    +  PT E +  + +++ I SYR+LP  + Q    +++    RP    +R+ EFL
Sbjct: 104 KLQERLVVRPTSEVLFGEHYKNIIHSYRDLPKLYNQWANVVRWEKTTRP---FLRTLEFL 160

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++ ++   T E +     KM   Y  I     + +IP                ++    
Sbjct: 161 WQEGHTCHETDEQAHEETVKMLNVYAEICE--NILAIP----------------VIKGQK 202

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E + F    +                            Y   S +H+ K   S   +  
Sbjct: 203 TEKEKFAGAKYT---------------------------YTIESLMHDGKALQSATSH-- 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                       + G  ++      F   +GK  YVQ  S+G    R++ A+I    D +
Sbjct: 234 ------------HLGDGFAKAFGIQFLNREGKQEYVQQTSWGF-TTRIIGAMIMVHGDDR 280

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA 393
           G++ P  +AP ++ ++ I  H +   D    +  +LS   +VG D       ++ G +F 
Sbjct: 281 GLVVPPRIAPTQVMIVPIAQHKEGVLDFAYDLKEKLSEFIRVGIDA----SDKKPGWKFN 336

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++ G PL++  G + +   +V +  R TG
Sbjct: 337 EYEMKGIPLRLEAGPRDIEQQQVVLVRRDTG 367


>gi|260583498|ref|ZP_05851246.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158124|gb|EEW93192.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 647

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 166/424 (39%), Gaps = 73/424 (17%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q    G+  WLP G      +   I +++   G   +  P +    L+  SG +  Y
Sbjct: 252 MISQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPVMADVGLYKTSGHWAHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D + ++  P +      ++++HI SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPPMDMGDGELLVLRPMNCPHHMMVYKNHIHSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F + P+  K  + ++      ++    +K    R           
Sbjct: 372 GLQRVREMTLNDGHTF-VRPDQIKDEFKRILDLIREVYKDFNVKDYRFR----------- 419

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-- 265
                            +D  D     ++  FDD        E W    A   +  +E  
Sbjct: 420 --------------LSYRDPED-----KHKYFDDD-------EMWNKAEAMLKEAMDEMG 453

Query: 266 -KLFDSLPEN---------KRVSARGIE-----VGHIFYFGTKYSLPMSATFKGADGKD- 309
            + F+++ E          +  +A G+E     +   F    ++ L    T+ G DG + 
Sbjct: 454 LEYFEAIGEAAFYGPKLDIQFKTAMGLEETMSTIQLDFLLPERFDL----TYVGEDGDNT 509

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           H   +   G+   A R VA +IE     KG  +P  +AP + ++I +        DA   
Sbjct: 510 HRPVVIHRGVVSTAERFVAYLIEEY---KG-AFPTWLAPVQATIIPVSVEHHY--DAARA 563

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++  +G  V  DD  E++G +   +     P Q+++G K V +  V +  R  G +E
Sbjct: 564 LKEKMMSLGLRVELDDRNEKMGYKIRASQTQKIPYQLVIGDKEVEEGTVTV--RRYGSKE 621

Query: 428 DMSL 431
            +S+
Sbjct: 622 TVSM 625


>gi|45658307|ref|YP_002393.1| threonyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59798553|sp|Q72PK6|SYT_LEPIC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|45601549|gb|AAS71030.1| threonyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 638

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 4/160 (2%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      ++ L +    +   G   W P G    +++   +R E N+ 
Sbjct: 234 QYLFQIEEAKKRDHRKIGKEMDLFS--FQKEGPGFPFWHPKGTILWNSLAEYLRSECNKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+ S
Sbjct: 292 GYQEIKTPAVLSSELWKKSGHWDNFHENMY-FTDIDEEDYALKPMNCPGCSLIYKHHLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP  F +     R EL     G+ R R F   D++ +
Sbjct: 351 YRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIY 390


>gi|167587363|ref|ZP_02379751.1| threonyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 635

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H +V    F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGHVQV----FKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 371 GLMRVRGFVQDDAHIF 386


>gi|86132750|ref|ZP_01051342.1| Prolyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85816704|gb|EAQ37890.1| Prolyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 492

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F    GK  +V   S+G+ + R++ A+I +  D +G+
Sbjct: 234 GKALQAGTSHFLGQNFAKAFDVKFTSNQGKQEHVWATSWGV-STRLMGALIMTHSDDQGL 292

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKV----GCDVFWDDM-GEQIGSQF 392
           + P ++APF++ ++ I K  +Q+  DA  ++   L +     G  V +D+    + G +F
Sbjct: 293 VLPPNLAPFQVVIVPIYKNQEQL--DAISQVANELVQDLKLHGVSVKFDNRDTHKPGWKF 350

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +L G PL++ +G K +    VE+  R T  +E ++ E V++
Sbjct: 351 NEYELKGVPLRIGIGPKDLEKRTVELARRDTLTKEFVAKETVVD 394



 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 116 EEELIVRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEG 174

Query: 161 YS 162
           ++
Sbjct: 175 HT 176


>gi|328553230|gb|AEB23722.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 638

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 16  RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++AE  +H+ +   L+  M  + + G+  +LP GQ   + + + +R +Q+     E+  P
Sbjct: 238 KEAEKRNHRKLGAELQLFMFSEEAPGMPFYLPNGQFIRNTLESFLRSKQDAYHYQEVRTP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW +SG +D Y KE +  ++ + +     P +      IF+  ++SYR LP   
Sbjct: 298 MMMNQRLWEQSGHWDHY-KENMYFSEADQQRFALKPMNCPGHMLIFKERLRSYRELPIRM 356

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
            +     R E      G++R R F   DA+ F +TP+
Sbjct: 357 AEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-VTPD 392


>gi|322833539|ref|YP_004213566.1| threonyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321168740|gb|ADW74439.1| threonyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 642

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 153/412 (37%), Gaps = 48/412 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKSYDYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIRMVYDMYSTFGFEKIVVKLSTRPEKRIGTD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+          D      P E   +   I                       L
Sbjct: 432 -EMWTRAEDDLAAALTENDIPFEYQPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-ADGKDHYVQMGSYGIGAMRV 324
            D L        R  + G +      +SLP  ++A++ G ++ +   V +    +G+M  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDFSLPGRLNASYIGESNDRQVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP ++ ++NI           E++  +L   G  V  D  
Sbjct: 521 FIGILTEEYAG---FFPTWMAPVQVVIMNITDSQAT---YVEELTKKLQDAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            E+IG +     L   P  ++ G K V   KV ++ R       M + EV++
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVSEVVD 626


>gi|206559848|ref|YP_002230612.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|238693072|sp|B4E7I6|SYT_BURCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198035889|emb|CAR51780.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 635

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 15/164 (9%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H  + S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQEESPGMVFWHPKGWALWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H +V    F+ 
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGHVQV----FKH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF 386


>gi|194765983|ref|XP_001965104.1| GF21565 [Drosophila ananassae]
 gi|190617714|gb|EDV33238.1| GF21565 [Drosophila ananassae]
          Length = 749

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 169/409 (41%), Gaps = 44/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + +   ++ E  + G  E+  P + +A LW+ SG +  Y +
Sbjct: 363 FHELSPGSCFFQPRGAHIYNTLMDFMKAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAE 422

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       +K  +  P +      IF +  +S+R LP       +  R+EL     G+ 
Sbjct: 423 NMFSFEVEKEKFAL-KPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLT 481

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F   PE  K S  K  + +L+  + +   S  +   + P         
Sbjct: 482 RVRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKHVYTIFGFSFQLVLSTRP-----EKYL 534

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             L    + +   ++   +F +P +    D             A Y    D+    + D+
Sbjct: 535 GELEQWNDAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDA 579

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVI 329
           L    + +   ++    F    +++L    ++   DG K   V +    +G++  + A++
Sbjct: 580 LKRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAIL 631

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYAR--LSKVGCDVFWDDMGE 386
             +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++A   +S+  CD      G+
Sbjct: 632 TENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHAAGFMSEADCDA-----GD 683

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I
Sbjct: 684 TMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELI 732


>gi|105892737|gb|ABF75902.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia AU 1054]
 gi|116647586|gb|ABK08227.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia HI2424]
          Length = 618

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 238 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 297

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H +V    F+  ++SYR+LP  + +     R+E      
Sbjct: 298 NMFTTESEKRDYAIKPMNCPGHVQV----FKHGLRSYRDLPLRYAEFGSCHRNEASGALH 353

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 354 GLMRVRGFVQDDAHIF 369


>gi|189347188|ref|YP_001943717.1| prolyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|259511580|sp|B3EE36|SYP_CHLL2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189341335|gb|ACD90738.1| prolyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 481

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/331 (19%), Positives = 131/331 (39%), Gaps = 63/331 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ +    T 
Sbjct: 108 PTSETIIWASYKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGH----TA 162

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +K   ++  +  + I+ +   + + +     P+      E    A   ET  FC +  
Sbjct: 163 HATKEEASEEVLRMITIYKKFAEEYMAL-----PVIMGRKTESEKFAGADET--FCIEAM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           M                                                   + ++ G  
Sbjct: 216 MQ------------------------------------------------DGKALQAGTS 227

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++      F+ + G+  +V   S+G+ + R++ A+I +  D +G++ P  +A  
Sbjct: 228 HHLGQNFAKAFDCQFQTSAGELDFVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLASR 286

Query: 348 KISLINIKAHDQVC-RDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVI 405
           ++ +I I   D+    +  + I   L K G   F D   +   G +FA  +L G PL++ 
Sbjct: 287 QVVVIPILRGDKTAVLEQADAIVCTLKKHGIPAFVDSSDQNSPGWKFAEYELQGIPLRIE 346

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G + ++  K  +  R T  + ++ L++  +
Sbjct: 347 LGPRDLAGKKCVVARRDTLEKTELPLDDTFS 377


>gi|312885526|ref|ZP_07745164.1| prolyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311301994|gb|EFQ79025.1| prolyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 490

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 249 VEQWTA-PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            E W A P        NE+   +L     E      + ++ G   + G  ++      F 
Sbjct: 197 AENWLALPVVRGRKTANERFAGALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFT 256

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCR 362
             +GK  +V   S+G+ + R++ A++ +  D  G++ P  +AP ++ ++ I ++ +++ +
Sbjct: 257 SKEGKQEFVWATSWGV-STRLMGALVMAHSDDSGLVLPPKLAPIQVVIVPIFRSEEELAQ 315

Query: 363 --DACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +  + +   L      V +D+   Q  G +FA  +L G PL+V +G + +++  VE+ 
Sbjct: 316 ISEVADALSKALKAKNIRVKYDNRDTQRPGFKFAEYELKGIPLRVAIGGRDLANGTVELA 375

Query: 420 HRLTGIREDM 429
            R T  +E +
Sbjct: 376 RRDTKTKETV 385



 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           + D  G  ++    + ++ +I  PT E ++ + +R  I+SYR+LP    Q     R E+R
Sbjct: 98  KNDGEGNIIVDETAKLEEELIVRPTSETIIWNTYRGWIQSYRDLPLLINQWANVVRWEMR 157

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            R   +R+ EFL ++ ++   T E +     +M   Y
Sbjct: 158 TRL-FLRTTEFLWQEGHTAHATAEEAIAETEQMLHVY 193


>gi|210634040|ref|ZP_03297958.1| hypothetical protein COLSTE_01876 [Collinsella stercoris DSM 13279]
 gi|210158984|gb|EEA89955.1| hypothetical protein COLSTE_01876 [Collinsella stercoris DSM 13279]
          Length = 587

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 157/404 (38%), Gaps = 60/404 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+   + G   +LP G    + +    RE  ++ G +E+S P + ++ LW  SG +D Y 
Sbjct: 207 MMRDEAPGFPFFLPNGMILKNTLLDYWREIHHKAGYVEISTPQIMNSQLWKTSGHWDHYK 266

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M       ++  I  P +      ++ S   SYR LP    +I L  R EL+    G+
Sbjct: 267 DNMYSTMIDGEEYCI-KPMNCPGGVLVYASKPHSYRELPIRAGEIGLVHRHELKGALHGL 325

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F +TPE        +      ++ + G      +  R E   +G D 
Sbjct: 326 FRVRCFNQDDAHLF-VTPEQLTDEIVGVVNLITSVYDKFGFTYHLELSTRPEDS-MGSDE 383

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A+ G  +    +  M++ +   +  F                Y    D H E 
Sbjct: 384 DWE---RAEAG-LKTALERLGMEYVVNEGDGAF----------------YGPKIDFHLE- 422

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLPMS--ATFKGADG-KDHYVQMGSYGIG 320
             DSL             G  +  GT    + +P +    +  ADG K   + +     G
Sbjct: 423 --DSL-------------GRTWQCGTVQLDFQMPQNFDLEYVDADGTKKRPIMLHRVCFG 467

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++     GK  +W   +AP ++ ++ +    +  RD   ++ A+L   G  V 
Sbjct: 468 SIERFIGILIEHFAGKFPVW---LAPMQVKVLPVS---EKSRDYAHEVTAKLEAAGIRVV 521

Query: 381 WDDMGEQIGSQFAVADLLG---FPLQVIVGSKFVSDSKVEIKHR 421
            DD  E+IG  + + +  G    P  +I+G K V    + ++ R
Sbjct: 522 CDDRDEKIG--YKIREARGTDRVPYMLILGEKEVEAGNISVRDR 563


>gi|162218055|ref|YP_620875.2| threonyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|162227933|ref|YP_835120.2| threonyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|254245609|ref|ZP_04938930.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
 gi|124870385|gb|EAY62101.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
          Length = 635

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H +V    F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGHVQV----FKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 371 GLMRVRGFVQDDAHIF 386


>gi|84489803|ref|YP_448035.1| prolyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|114152212|sp|Q2NFL1|SYP_METST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84373122|gb|ABC57392.1| ProS [Methanosphaera stadtmanae DSM 3091]
          Length = 469

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++  +   GT ++      F+  DG   YV    YG+   RV+A++I +  D KG+
Sbjct: 212 GKTLQIATVHNLGTTFAHTFDIQFENEDGTHDYVHQVCYGLSD-RVIASLIAAHGDEKGL 270

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             P  VAP ++ +I I  K +  V  +  + +   L   G  V  D    + G ++   +
Sbjct: 271 SLPPVVAPEQVIIIPIIFKENQDVVLNFTDNLEKLLKNNGIRVKQDKRELRPGKKYYEWE 330

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G PL++ VG + + ++ + I  R TG +E +  +E
Sbjct: 331 KRGVPLRIEVGPRDIENNTIVINRRDTGDKEFVDYDE 367


>gi|71892130|ref|YP_277862.1| threonyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796236|gb|AAZ40987.1| threonyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 408

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 149/390 (38%), Gaps = 50/390 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W   G   L  +  IIR +       E+  PT+ +  LW ++G +D+Y + +   +
Sbjct: 28  GMVFWHQNGWILLQELKKIIRTQLKEYKYQEVKSPTMINHTLWKKTGHWDNYHEHIFTTS 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             + +  I  P +      IF   IKSY++LP+   +     R+E      G+MR+REF 
Sbjct: 88  SESHEYCI-KPMNCPGHIQIFNQGIKSYKDLPYRIAEFGNCHRNEPSGSLHGLMRTREFT 146

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             D + F  T        N        I++  G K+I ++  + P   IG D       +
Sbjct: 147 QDDGHIF-CTKTQIFDELNHCIKMMYDIYNTFGFKTILVKLSTRPAKRIGTD------SI 199

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-KLFDSLP 272
            DT E  +                    ++  N+I  Q+     A      E  L DSL 
Sbjct: 200 WDTAEQHL------------------STVLQHNNISFQYQPNDGAFYGPKIEFALLDSL- 240

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY---VQMGSYGIGAMRVVAAVI 329
                  R  + G I      +SLP     +  D  +     V +    +G+M     +I
Sbjct: 241 ------DRTWQCGTI---QLDFSLPNLLNARYIDRHNSRVVPVMIHRAILGSMERFIGLI 291

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              + G    +P  +AP ++ L+N+           EK      K+   V  D   E+IG
Sbjct: 292 TEEYAG---FFPTWLAPTQVVLMNVTDQQSEYVSVIEKKLIN-KKIRTKV--DLRNEKIG 345

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            +     L   P  +I G+K ++ + V I+
Sbjct: 346 FKIRYYTLQRIPYMLICGNKEMNQNTVAIR 375


>gi|291545263|emb|CBL18372.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus sp.
           18P13]
          Length = 646

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/431 (19%), Positives = 160/431 (37%), Gaps = 52/431 (12%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIR 58
           P+ AE+ ++   L    +  H+K                G+   LP G + +  +   + 
Sbjct: 224 PKAAELEAYLKQLEEAKLRDHNKLGRELELFTTVDCIGQGLPIMLPKGARVIQLLQRFVE 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTD 116
           +E+ R G +    P +  +DL+  SG +D Y + M  L D      ++   P        
Sbjct: 284 DEEQRRGYLLTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYQ 343

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F +  +SYR+LP    +    FR+E      G++R R+F + + +   L PE  +  + 
Sbjct: 344 VFLNRPRSYRDLPMRLGETSTLFRNEDSGEMHGLIRVRQFTISEGHLI-LRPEQLEDEFR 402

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   +   LGL              D+++ F         +   + +  D    + 
Sbjct: 403 GCLELANYMLTTLGL------------ADDVTYRFSQWDPNNTEKYIGTPEQWDEAQGAM 450

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF--YFGTK 293
               D +    +I     A Y    D+  + +       K  +   I++  +    FG +
Sbjct: 451 KKILDHLGIHYTIGIDEAAFYGPKLDIQIKNV-----HGKEDTLITIQIDQMLAQLFGME 505

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y+        G   + + +   S G    R +A +IE  + G   +W   +AP ++ LI 
Sbjct: 506 YT-----DVDGTKRRPYIIHRTSLGCYE-RTLALLIE-KYAGAFPLW---LAPEQVKLIP 555

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D   ++  +L   G  +  DD  E++G +   A L   P  + +G   V  
Sbjct: 556 IADRHM---DYTLELARKLEAAGMRITVDDRAEKVGYKIRQAVLEKVPYMLTIGDNEVES 612

Query: 414 SKVEIKHRLTG 424
             V ++ R  G
Sbjct: 613 KTVSVRSRRDG 623


>gi|32265941|ref|NP_859973.1| threonyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|73919797|sp|Q7VJ09|SYT_HELHP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|32261990|gb|AAP77039.1| threonyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 604

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 162/396 (40%), Gaps = 58/396 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +   N+  ++ +     G   +  P +  +D+W +SG Y +Y KE +   
Sbjct: 229 GLPIWLPKGARLRHNIEHLLTQALKERGYEPVRGPEILKSDVWKKSGHYSNY-KENMYFT 287

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S  +SYR LP  FY+  +  R E      G++R REF 
Sbjct: 288 IIDEQEYGIKPMNCVGHIKVYQSSPRSYRELPLRFYEYGIVHRHERSGVLHGLLRVREFT 347

Query: 157 MKDAYSFDLTPEGSKH-----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             DA+ F +T +          + K  ++     + + L + P ++    IG D      
Sbjct: 348 QDDAHIFCMTSQIKSEVNQILDFTKGIMNAFGFHYEMELSTRPQKS----IGND------ 397

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  E      K  ++          ++ IS   I E   A Y    D+   K+ D+L
Sbjct: 398 ---EVWENATAALKSALE----------ENHISYQ-IDEGGGAFYGPKIDI---KITDAL 440

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-----GAMRVVA 326
                   R  + G I     +  + +   F+ +   +H VQ+    I     G+     
Sbjct: 441 -------KRKWQCGTI-----QIDMNLPERFELSYTDEHNVQVQPVMIHRAILGSFERFV 488

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A++     G+   +P  +AP ++ LI I +A  +  R   +KI   +++ G      D  
Sbjct: 489 AILTEHFGGE---FPLFIAPTQVILIPIGEAQLEYARILRDKI---ITQSGAYAELMDKN 542

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E +  +  +A+    PL V++G+K V    + I+ R
Sbjct: 543 ESLSKKIRLAEKQRVPLIVVIGAKEVESKILAIRDR 578


>gi|14590847|ref|NP_142919.1| prolyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74579173|sp|O58734|SYP_PYRHO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3257420|dbj|BAA30103.1| 480aa long hypothetical prolyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 480

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 3/168 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   +S   +  ++  DG   YV   ++G+   R++AAVI    D +G+
Sbjct: 220 GRTLQIGTMHNYKQNFSKAYNILYEKEDGTHDYVHQTTFGMSE-RLLAAVIAIHGDDRGM 278

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P ++AP ++ ++ I  K  ++      + I   L   G  V+ D   ++ G +F   +
Sbjct: 279 VLPPTIAPIQVVIVPIPKKGSEEEVYSYAKGIEEELRDAGIRVYLDLRDKRPGWKFYDWE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L G P++V VG   V +S V +  R    +  +  EE+++     F +
Sbjct: 339 LKGVPVRVEVGPIDVQNSTVVLARRDKLEKITVKREELVDKVRELFED 386



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  WLP G K + N+   I EE  RTG  E+  P L    +   E+     +  E+  
Sbjct: 32  KGMNVWLPYGLKIMRNIEKFIHEEMERTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFW 91

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  ++  PT E  M  +F   I+S+ +LPF  YQI   +R E +    ++R
Sbjct: 92  VTHAGHEPLDVRLVLRPTSETAMYSMFALWIRSHADLPFKVYQIVNVYRYETKHTRPLIR 151

Query: 152 SRE 154
            RE
Sbjct: 152 VRE 154


>gi|94496356|ref|ZP_01302933.1| prolyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94424102|gb|EAT09126.1| prolyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 508

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 133/345 (38%), Gaps = 73/345 (21%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E V+   F   ++S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 114 EEPLVVRPTSETVIGAAFSRWVQSWRDLPVLINQWANVVRWEMRTRM-FLRTAEFLWQEG 172

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T   +     KM   Y R F    + ++P+ A   P                   
Sbjct: 173 HTAHATVGEAMDETLKMLEVY-RAFAEECV-AMPVIAGEKP------------------- 211

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                         EN  F   ++  SI                        E      +
Sbjct: 212 --------------ENERFPGAVATYSI------------------------EAMMQDGK 233

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + GT +S   +  F+ A+G+    Q  S+G+ + R++  +I +  D  G+  
Sbjct: 234 ALQAGTSHFLGTTFSQAQNIKFQNAEGQQELAQTTSWGV-STRMIGGLIMTHGDDDGLRV 292

Query: 341 PDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           P  VAP++I ++ +      D    + C  +  RL+++  D F + +   +  + A A  
Sbjct: 293 PPRVAPYQIVIVPMLRDTEEDAAIVEYCTNLVHRLNQL--DAFREPVRALLDKRPAKAAT 350

Query: 398 -------LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                   G P+ + VGS+ V+   V +  R    RED  L+  I
Sbjct: 351 KRWGWVKKGAPIVIEVGSRDVAGGNVSVIRRDRLYREDGKLDSRI 395


>gi|302381720|ref|YP_003817543.1| threonyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192348|gb|ADK99919.1| threonyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 639

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 158/443 (35%), Gaps = 59/443 (13%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L I +   RD      KL  +  + H  +  +G+  W P G      + A +R   + 
Sbjct: 232 YLLRIEEAEKRD----HRKLGRQMELFHMQEEGRGMVFWHPKGWILWQVIEAYMRRRLDA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +     W  SG ++ Y   M        + +   P +      IF    +
Sbjct: 288 AGYVEVKTPQVLDRKFWEASGHWEKYRPNMFVCETVEGETLSLKPMNCPGHVQIFGIGQR 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +     R E      G+MR R F   DA+ F    E       + F+   
Sbjct: 348 SYRELPLRMAEFGACHRYEPSGALHGLMRVRGFTQDDAHIF--CREDQIVEETRRFIELT 405

Query: 183 RIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSKDFMDFPIPSENTDF 239
           RI H  LG+++  +   + P     S EF   A+   GE       D    P+ +E    
Sbjct: 406 RIVHADLGMQTAYINLATRPDVRAGSDEFWDKAEGMLGEAARLAGVD----PVIAEGDGA 461

Query: 240 -----DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                 D +  ++I  +WT        V        LPE                     
Sbjct: 462 FYAPKLDFVVKDAIGREWTCGTLQLDYV--------LPER-------------------- 493

Query: 295 SLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
              ++A + G DG+ H   M    I G+      ++  ++ G   +W   +AP +  +  
Sbjct: 494 ---LNAEYVGEDGQKHRPVMLHRAILGSFERFIGIMIENYAGAFPLW---LAPVQAVVAT 547

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +         E++ A+    G  V  D   E++G +     +   P+  +VG      
Sbjct: 548 ITSD---ADGYAEEVAAKFKAAGLRVETDLRNEKVGYKVREHSVGKVPVIAVVGRNEAEQ 604

Query: 414 SKVEIKHRLTGIREDMSLEEVIN 436
            +V I+   +  +  +S+EE I 
Sbjct: 605 GQVAIRRLGSQAQTVVSVEEAIR 627


>gi|194861340|ref|XP_001969762.1| GG23767 [Drosophila erecta]
 gi|190661629|gb|EDV58821.1| GG23767 [Drosophila erecta]
          Length = 746

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/409 (20%), Positives = 168/409 (41%), Gaps = 44/409 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   I+ E  + G  E+  P + +A LW+ SG +  Y + 
Sbjct: 361 HELSPGSCFFQPRGAHIYNTLMGFIKSEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAEN 420

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      IF +  +S+R LP       +  R+EL     G+ R
Sbjct: 421 MFSF-EAEKETFALKPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTR 479

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F   PE  K S  K  + +L+  + +   S  +   + P      +   
Sbjct: 480 VRRFQQDDAHIF-CAPEQIK-SEMKGCLEFLKYVYTIFGFSFQLVLSTRP-----DNYLG 532

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L    + +   ++   +F +P +    D             A Y    D+    + D+L
Sbjct: 533 ELEQWNDAEKALAESLNEFGMPWKENPGDG------------AFYGPKIDI---TIMDAL 577

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIE 330
               + +   ++    F    +++L    ++   DG K   V +    +G++  + A++ 
Sbjct: 578 KRAHQCATIQLD----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAILT 629

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIY--ARLSKVGCDVFWDDMGEQ 387
            +  GK   WP  ++P ++ ++ +  A+DQ  +   ++++    +S+  CD      G+ 
Sbjct: 630 ENFAGK---WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDA-----GDT 681

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +   A L  F   ++VG K  S + V ++ R   +  ++S+ E+I 
Sbjct: 682 MNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELIT 730


>gi|302672266|ref|YP_003832226.1| prolyl-tRNA synthetase ProS [Butyrivibrio proteoclasticus B316]
 gi|302396739|gb|ADL35644.1| prolyl-tRNA synthetase ProS [Butyrivibrio proteoclasticus B316]
          Length = 477

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++      FG  ++      + G D + HYV   S+G+   R + A+I    D  G+
Sbjct: 225 GRALQSATSHNFGDGFAKAFGIQYAGKDNQLHYVNQTSWGL-TTRTIGAMIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ +I I+   +   +A  KI   L+  G  V  D      G +FA  ++ 
Sbjct: 284 VVPPKIAPIQVVVIPIQQKKEGVLEAANKIAESLA--GFRVKVDSTDRTPGFKFAEQEMR 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K +   K  +  R T  + + +++EV
Sbjct: 342 GIPVRVEIGPKDLEAGKCVLCRRDTREKIECAIDEV 377



 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D ++  I SY++LP    Q    +++  E RP    +RSREFL ++ ++   
Sbjct: 114 PTSETLFCDYYKGEIHSYKDLPQVLNQWCSVVRWEKETRP---FLRSREFLWQEGHTAHA 170

Query: 166 TPEGSKHSYNKMFVSY 181
           T E ++    +M   Y
Sbjct: 171 TFEEAEERTQQMLNVY 186


>gi|203284615|ref|YP_002222355.1| threonyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|238690570|sp|B5RMR3|SYT_BORDL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|201084058|gb|ACH93649.1| threonyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 583

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/415 (20%), Positives = 164/415 (39%), Gaps = 48/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G +    +    REE  + G   +  P +  + LW  SG  D Y + M    
Sbjct: 205 GLIFFHPHGARIRALIENFWREEHFKNGYDILFTPHIGKSWLWETSGHLDFYKESMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G MR R F 
Sbjct: 265 EMDRSDYYVKPMNCPFHIAIYNTDKHSYRDLPFRWAELGTVYRYEKIGAIHGTMRVRGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T E       ++    + ++++ G  ++     + P   +G D   +  V 
Sbjct: 325 QDDAHII-CTYEQVNFEVREVLRFAIDMWNKFGFTNLKAYLSTKPEKAVGDDDDWQMAVK 383

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                      K  +DF     N DFD       I E   A Y    D+   K+ DSL  
Sbjct: 384 V--------LEKALIDF-----NIDFD-------IDEGGGAFYGPKIDL---KIIDSL-- 418

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
                 R  ++  I +    ++LP+    T+   DGK+    M     +G++     ++ 
Sbjct: 419 -----GRAWQMSTIQF---DFNLPVRFKMTYTAEDGKEKRPFMIHRALLGSIERFFGILV 470

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIG 389
             + G   +W   +AP ++ +I +   + +  +   ++ +R    G  + +D+    ++ 
Sbjct: 471 EHYGGAFPVW---LAPLQVVIIPV---NSIVEEYALEVLSRFQNEGIRIKFDNYCNMRMN 524

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++         P   I+G + V + K+ I+ R       + L+E + +   + SN
Sbjct: 525 AKIRQYQSKKVPYMFIIGEREVVEGKISIRTRTNEQINGLELKEALEFVKLKISN 579


>gi|313235460|emb|CBY19737.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G    + +   IR E  + G  E+  P + +++LW  SG +  Y  +M  
Sbjct: 396 SAGSCFWLPRGAVIYNRLQDFIRSEYRKRGFKEVVTPNIFNSELWKTSGHWQHYEDDMFT 455

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +DK  +  P +      +F S ++SY+ LP  F    +  R+EL     G+ R R 
Sbjct: 456 FKVEDDKWAM-KPMNCPGHCVMFGSRLRSYKELPLRFADFGVLHRNELSGALSGLTRVRR 514

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 515 FQQDDAHIF 523


>gi|312876378|ref|ZP_07736363.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796872|gb|EFR13216.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 647

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/410 (20%), Positives = 165/410 (40%), Gaps = 50/410 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K L  +   + +E+ + G +    P +  +DL+  SG +D Y   M  +
Sbjct: 264 QGLPLLMPKGAKILQILQRFVEDEEEKRGYLLTKTPYMAKSDLYKISGHWDHYRDGMFVI 323

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +  ++ +   P        I+ S  +SYR+LP  + +    FR+E      G++R R+F
Sbjct: 324 EEDENEVLALRPMTCPFQFLIYNSKQRSYRDLPIRYSETSTLFRNESSGEMHGLIRVRQF 383

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+     P+  +  +  +      I   LG+++            D+ + F     
Sbjct: 384 TLSDAHII-CRPDQVEEEFKGVLDLIQYIMKTLGIEN------------DIWYRFSRWDP 430

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD-----DIISLNSIVEQWTAP-YAATSDVHNEKLF- 268
             + +      ++D P   E T+ D     D + +N    +  A  Y    D+  + ++ 
Sbjct: 431 NNKEK------YIDNPEAWEKTENDMKNILDKLGINYKEAKGEAAFYGPKLDIQFKNVYG 484

Query: 269 --DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVV 325
             D++          I V   F    ++ +    T+   DG K   + +    IG     
Sbjct: 485 KEDTI----------ITVQIDFALAERFDM----TYVDRDGQKKRPIIIHRSSIGCYERT 530

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++   ++G   +W   ++P +I +I +  +     +  + +   L + G  V  D   
Sbjct: 531 LAMLIEKYNGAFPLW---LSPVQIRVIPVSDN---FNEYAKNVARILKENGFRVEEDYRS 584

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E +G +   A L   P  VIVG K   ++ V ++ R  G     ++E+ I
Sbjct: 585 ETVGYKIRDAQLQKIPYMVIVGEKEQKENTVAVRDRKKGDLGSFTIEDFI 634


>gi|163752580|ref|ZP_02159762.1| threonyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161327534|gb|EDP98738.1| threonyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 642

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IRE+  +    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTLFLELEKFIREKLGQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N + +I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTKSENREYVI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVQQEVSACIKMVYDTYATFGFNNIVIKLSTRPEQRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+    Q   + D     +P E   +   I                       L
Sbjct: 432 -EMWDRAEEALKQALIANDIEFEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPGRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   +P  +AP ++ ++NI        D   ++   L + G     D  
Sbjct: 521 FLGILIEEYAGK---FPTWLAPMQVVVMNITDKQS---DYAHEVVNLLKENGIRASKDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|323447698|gb|EGB03610.1| hypothetical protein AURANDRAFT_55515 [Aureococcus anophagefferens]
          Length = 657

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/389 (20%), Positives = 145/389 (37%), Gaps = 37/389 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    +    R G   +  P + + DLW  SG +D Y + M    
Sbjct: 255 GLCFWHPRGARIRMLMEDTWKAAHERGGYELLVTPHIANVDLWKTSGHFDFYAEGMFDQM 314

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D   +     P +      +++  ++SYR+LPF + ++   +R E      G+MR R F 
Sbjct: 315 DVEKEQYQLKPMNCPFHCLVYKDQLRSYRDLPFRWAELGTVYRYERSGTLQGLMRVRGFT 374

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  TPE  +     +      I  + G     +   + P     S E    A  
Sbjct: 375 QDDAHIF-CTPEQLEDEIVAVLELTEEILSKFGFDDYELMLSTRPDKAVGSDEIWTKATA 433

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                   K +                  + + E   A Y    D+   K+ D+L    +
Sbjct: 434 ALKGALDRKGWD-----------------HGVDEGGGAFYGPKIDL---KIKDALGRQWQ 473

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDG 335
            S     V   F    ++ L     ++ A G+     M    I G++    A++  S  G
Sbjct: 474 CST----VQCDFNLPERFEL----EYRAASGQAERPIMVHRAIFGSLERFFAILLESCGG 525

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
              +W   +AP ++ L+ +       RD  + + A+ ++ G     D   +++  Q   A
Sbjct: 526 DLPLW---LAPTQMRLLPVTDD---ARDFSKAVAAKAAQRGIRCEIDSGKDRLNKQIRNA 579

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +    P+  +VG K ++   + ++ R  G
Sbjct: 580 ETQRVPIMCVVGEKEMASGDLAVRARTMG 608


>gi|315646839|ref|ZP_07899954.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315277769|gb|EFU41093.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 635

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 159/410 (38%), Gaps = 45/410 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M    + G+  +LP G    + +    RE Q   G  E+  P + +  LW  SG +D Y 
Sbjct: 255 MFSDDAPGMPFFLPKGTIIRNELEQFARELQFHRGYDEVRTPLMMNKRLWEMSGHWDHY- 313

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           K+ +  +  +++  +  P +      ++++ + SYR LP    +     R E      G+
Sbjct: 314 KDNMYFSKVDEQEYVMKPMNCPGHMLVYQNSLHSYRELPIRLSEFGQVHRHEYSGALSGM 373

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F + P+   H      + ++   +R+      +   + P     S E
Sbjct: 374 MRVRTFCQDDAHIF-VRPD-QIHDEIGQVIDFISQVYRVFGFDYTIELSTRPEDSMGSDE 431

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A++   +V    D    P                I E   A Y    D H   + D
Sbjct: 432 LWEQAESSLQEVL---DQQKLPY--------------RINEGDGAFYGPKIDFH---ILD 471

Query: 270 SLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           SL        R  + G I   F F  K+ L    ++   D + H  V +     G++   
Sbjct: 472 SL-------KRSWQCGTIQLDFQFPEKFDL----SYIAEDNQKHRPVVIHRAVFGSIERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP  + LI +  H     D   K+  RL   G  V  D   
Sbjct: 521 IGILTEHYGGAFPLW---LAPVHVMLIPVSDH---YIDFSLKVKKRLEHAGVRVEVDIRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E++G +   A LL  P   ++G K ++   V ++ R  G   + +++++I
Sbjct: 575 EKLGYKIREAGLLKTPYTFVLGEKEMNSDLVAVRKRGEGELGESAIDDMI 624


>gi|313246933|emb|CBY35782.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G    + +   IR E  + G  E+  P + +++LW  SG +  Y  +M  
Sbjct: 396 SAGSCFWLPRGAVIYNRLQDFIRSEYRKRGFKEVVTPNIFNSELWKTSGHWQHYEDDMFT 455

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +DK  +  P +      +F S ++SY+ LP  F    +  R+EL     G+ R R 
Sbjct: 456 FKVEDDKWAM-KPMNCPGHCVMFGSRLRSYKELPLRFADFGVLHRNELSGALSGLTRVRR 514

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 515 FQQDDAHIF 523


>gi|257075630|ref|ZP_05569991.1| prolyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 470

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 9/157 (5%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG+  WLP G K + ++++++RE  +  G  E+S P L S + L VE      +  E+  
Sbjct: 36  KGMNVWLPYGLKIIHSIDSLLREYSDDGGIEEVSFPVLISREQLEVEFEHVKGFENEIYW 95

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  M  +F   I+S+ +LPF  YQI   +R E +     +R
Sbjct: 96  VTKGGTTPLDIDLALRPTSEAAMYTMFPLWIRSHSDLPFRIYQIVNVYRYETKHTRSFIR 155

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
            RE    +A++  +  E ++    K    YL+I  RL
Sbjct: 156 VREIHFYEAHTAHVDFEDAE----KQMDEYLKIMERL 188



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R +++G I  +G  ++      +   +G   YV   ++G+   R++AAVI    D KG++
Sbjct: 224 RSLQIGTIHEYGENFAKNYGIKYLDENGDMKYVSQTTFGLSE-RLMAAVIGIHGDDKGLV 282

Query: 340 WPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            P  +AP ++ ++ I +  +D++  +    I ++L ++G     D+     G +F   ++
Sbjct: 283 LPYKLAPVQVIIVPIPSDNYDEII-EYSNGIKSKLMEIGIRCQIDNSDYTPGYKFNEWEM 341

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            G P+++ +G + V+D  + I  R    +  + LEE+ N
Sbjct: 342 RGVPVRIEIGKREVNDKTLTISLRTRKKKIKIELEEISN 380


>gi|308190360|ref|YP_003923291.1| proline--tRNA ligase [Mycoplasma fermentans JER]
 gi|319777760|ref|YP_004137411.1| prolyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|307625102|gb|ADN69407.1| proline--tRNA ligase [Mycoplasma fermentans JER]
 gi|318038835|gb|ADV35034.1| Prolyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 478

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y    +S      FK  + +  Y    S+G+ + R++ A+I +  D +GI
Sbjct: 221 GRALQAGTSHYLAQNFSKQFEIQFKTENNELDYAYQTSWGV-STRLLGAIIMTHGDNRGI 279

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P  VAP +I ++ + A+ ++     C+ +Y  LS+    V  D   +  G + + +++
Sbjct: 280 IIPPRVAPIQIDVLELFANKNKEVHTYCDNLYKDLSR-KFRVRLDSSDKGPGFKASNSEI 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G PL++ VG K + +  V I  R T  + ++   EV
Sbjct: 339 QGVPLRIEVGPKDIENKSVTIVRRDTLEKINIKQSEV 375



 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 17/153 (11%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEM---LRLADRN-DKAMIY 106
           N+N   RE+    G   + +P L    L+  E      +  E+    ++ D++ D+ +  
Sbjct: 53  NLNECFREK----GVQNVYLPLLIPEKLFNKEKDHIAGFNPELATITKVGDKDLDEKVFI 108

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E +  D+F++ I+SY++LP  + Q     R E +     +RSREFL ++ ++    
Sbjct: 109 RPTSEVLFADLFKNSIESYKDLPMIYNQWANVVRWE-KTTNPFLRSREFLWQEGHTCHSN 167

Query: 167 P-------EGSKHSYNKMFVSYLRIFHRLGLKS 192
           P       +G   +Y+K   ++L I   +G K+
Sbjct: 168 PLEARKFTKGMISTYSKFLKNFLAIPTIIGKKT 200


>gi|302878338|ref|YP_003846902.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302581127|gb|ADL55138.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 637

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 152/398 (38%), Gaps = 54/398 (13%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H KG   W  + Q     + A  RE   +    E+  P +    LW +SG +++Y
Sbjct: 261 GMVFWHPKGWTLWQEIEQ----YMRAKFREHDYQ----EVRTPAIMDKTLWEKSGHWENY 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
              M   A  N    +  P +      I+   + SYR+LP    +     R+E      G
Sbjct: 313 RDNMFTTASENRDYAV-KPMNCPGHVQIYNHGLHSYRDLPLRLAEFGSCHRNESSGSLHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLS 207
           +MR R F   DA+ F    E    S    F+  L  ++   G  ++ ++  + P     S
Sbjct: 372 LMRVRGFTQDDAHIF--CTEAQVESEVSNFIVMLNEVYRDFGFDNVIVKLSTRPEKRVGS 429

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            E    A+ G       ++ +D+ + P E   +   +                       
Sbjct: 430 DETWDKAEAGLAAAL-KQNRLDYEVQPGEGAFYGPKVEFT-------------------- 468

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMR 323
           L DSL        R  + G I      ++LP  +SA F   D  +   V +    +G+M 
Sbjct: 469 LKDSLD-------RMWQCGTI---QLDFNLPVRLSAEFVDEDNTRKPPVMLHRAILGSME 518

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   H G   +W   ++P +  L+NI    Q   +  ++I   L++ G  V  D 
Sbjct: 519 RFIGILIEHHAGAFPMW---LSPVQTVLMNIS---QAQEEYAKEIGQILARAGIRVQLDL 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+I  +     L   P Q+IVG K VS   + ++ R
Sbjct: 573 RNEKITYKIREHSLQKLPYQLIVGDKEVSGRLIAVRTR 610


>gi|333030425|ref|ZP_08458486.1| Prolyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332741022|gb|EGJ71504.1| Prolyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 493

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + +  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVKFVNRENQLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINI-KAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P ++AP ++ ++ I K  +Q+ +  +    I  +L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPALAPIQVVIVPIFKGEEQLAKIDERVNPIINKLKGMGVSVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G++ + +  +E+  R T  +   S+E +  Y
Sbjct: 355 YELKGVPVRLVLGARDLENGTIEVMRRDTLEKTTHSIEGIEEY 397



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YS 162
           ++
Sbjct: 177 HT 178


>gi|73981321|ref|XP_860741.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 4
           [Canis familiaris]
          Length = 695

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 169/424 (39%), Gaps = 78/424 (18%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E  R G  E+  PT
Sbjct: 299 EAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRRGFSEVKTPT 358

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFR-----SHIKS 124
           L SA LW  SG ++ Y ++M  L    +DR   ++    T     T   +     +H   
Sbjct: 359 LFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTSHSTDTLALKPMNCPAHCLM 418

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + + P ++ ++ L+  D     FGV+   E              GS     +     LR 
Sbjct: 419 FAHRPRSWRELPLRLAD-----FGVLHRAE------------ASGSLGGLTR-----LRC 456

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F +                 D +H F    D  E ++    DF+          F   +S
Sbjct: 457 FQQ-----------------DDAHIFCA-PDQLEEEIQGCLDFLRSVYAVLGFSFRLALS 498

Query: 245 LNS---IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--S 299
                 + E      A   DVH   L D+L        R  + G I      + LP+   
Sbjct: 499 TRPSGFLGESCLWDQAEQIDVH---LHDAL-------GRPHQCGTI---QLDFQLPLRFD 545

Query: 300 ATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
             +KG  G  +  V +    +G++  +  V+  S+ GK   WP  ++PF++ +I + A  
Sbjct: 546 LQYKGQAGVLERPVLIHRAVLGSVERMLGVLAESYGGK---WPLWLSPFQVVVIPVGAEQ 602

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++  R+A +++ A  + + CD+   D G  +  +   A L  +  Q +VG K  S   V 
Sbjct: 603 EEYAREAQQRLQA--AGLVCDLD-ADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSKKTVN 659

Query: 418 IKHR 421
           I+ R
Sbjct: 660 IRTR 663


>gi|323446287|gb|EGB02506.1| hypothetical protein AURANDRAFT_59726 [Aureococcus anophagefferens]
          Length = 452

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 154/415 (37%), Gaps = 38/415 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD  +   KL L + +      G+  W P G +    +    +    R G   +  
Sbjct: 25  EAKKRDHRVLGKKLDLFS-IQEAAGGGLCFWHPRGARIRMLMEDTWKAAHERGGYELLVT 83

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + + DLW  SG +D Y + M    D   +     P +      +++  ++SYR+LPF 
Sbjct: 84  PHIANVDLWKTSGHFDFYAEGMFDQMDVEKEQYQLKPMNCPFHCLVYKDQLRSYRDLPFR 143

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+MR R F   DA+ F  TPE  +     +      I  + G 
Sbjct: 144 WAELGTVYRYERSGTLQGLMRVRGFTQDDAHIF-CTPEQLEDEIVAVLELTEEILSKFGF 202

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     S E    A          K +                  + + E
Sbjct: 203 DDYELMLSTRPDKAVGSDEIWTKATAALKGALDRKGWD-----------------HGVDE 245

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   K+ D+L    + S     V   F    ++ L     ++ A G+  
Sbjct: 246 GGGAFYGPKIDL---KIKDALGRQWQCST----VQCDFNLPERFEL----EYRAASGQAE 294

Query: 311 YVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M    I G++    A++  S  G   +W   +AP ++ L+ +       RD  + + 
Sbjct: 295 RPIMVHRAIFGSLERFFAILLESCGGDLPLW---LAPTQMRLLPVTDD---ARDFSKAVA 348

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           A+ ++ G     D   +++  Q   A+    P+  +VG K ++   + ++ R  G
Sbjct: 349 AKAAQRGIRCEIDSGKDRLNKQIRNAETQRVPIMCVVGEKEMASGDLAVRARTMG 403


>gi|297205704|ref|ZP_06923099.1| threonine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|297148830|gb|EFH29128.1| threonine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 656

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 164/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 272 GLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 331

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 332 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 391

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  E  +  + K+    + ++    +     R         LS+      D
Sbjct: 392 TLNDGHTF-VALEQVQEEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 436

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 437 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 493

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 494 ETMSTIQLD----FMLPERFDL----SYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 545

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N+ AH +  +    K+   L K G     D   E++G +
Sbjct: 546 KGAFPTW---LAPEQVEIIPVNLDAHGEYAK----KVRDELLKHGFRAEVDFRNEKMGYK 598

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G   ++ + V ++   T  +E MSL++ I+
Sbjct: 599 IRESQTQKVPYTLVLGDDEMNSNAVNVRPYGTEKQESMSLDKFID 643


>gi|197303940|ref|ZP_03168972.1| hypothetical protein RUMLAC_02677 [Ruminococcus lactaris ATCC
           29176]
 gi|197296908|gb|EDY31476.1| hypothetical protein RUMLAC_02677 [Ruminococcus lactaris ATCC
           29176]
          Length = 478

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   +FG+ +       +   + + H V   S+G+ + RV+ A+I    D  G+
Sbjct: 223 GKALQSGTSHFFGSAFPNAFGIQYSDKNNELHEVYETSWGM-STRVIGALIMVHGDDSGL 281

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP +  +I I  H +   D   ++   L   G     DD  +  G +F+  ++L
Sbjct: 282 VIPPRVAPVQTMVIPIAQHKEGVLDKANELLDTLKAAGYKAKIDDSDKAPGWKFSGQEIL 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P ++ +G K + +++  I  R T  +  +SL+E+
Sbjct: 342 GIPTRIEIGPKDIENNQAVIVRRDTREKIVVSLDEI 377



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG  ++LP G    +N+   +      TG   + +P +   + L  E    + +  E+  
Sbjct: 36  KGCMNYLPNGYALWENIQKELDARFKETGVENVYLPVMIPESLLQKEKDHIEGFAPEVAW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     + +       PT E +  D++   ++SYR+LP  + Q    L++    RP    
Sbjct: 96  VTHGGTEPLQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWEKTTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +RSREFL ++ ++   T E ++    +M+  Y
Sbjct: 153 LRSREFLWQEGHTIHATYEEAEERTKQMWRVY 184


>gi|148244740|ref|YP_001219434.1| threonyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166225515|sp|A5CWF9|SYT_VESOH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146326567|dbj|BAF61710.1| threonyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 636

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 14/180 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H+KG   W+ L Q     +  I R+     G  E+  P L    LW +SG +D +
Sbjct: 259 GMVFWHAKG---WI-LYQLVEQYMRGIFRD----NGYQEVHTPQLIDKSLWEKSGHWDKF 310

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           G  M       D+     P +      I+   +KSYRNLP    +     R+E      G
Sbjct: 311 GDVMFTTTS-GDRDYAVKPMNCPAHIQIYNQGLKSYRNLPLRLAEFGSCHRNEPSGTLHG 369

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F+  D + F  TPE  +   +        ++   G + I ++  + P   +G D
Sbjct: 370 IMRVRNFVQDDGHIF-CTPEQIQDEVSTFIDLTFNVYKYFGFEKINIKLSTRPKKRVGSD 428


>gi|168187192|ref|ZP_02621827.1| prolyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294885|gb|EDS77018.1| prolyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 478

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGV-TTRLIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +AP ++ ++ I  H +   D  E++  R+SKV   V  D   +  G +F   ++ 
Sbjct: 284 KLPPRIAPLQVVIVPIAQHKEGVLDKAEELRERISKVA-RVKVDSSDKMPGWKFNEYEMK 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K + +++V +  R T  +  +S++E+
Sbjct: 343 GVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDEL 378


>gi|238810182|dbj|BAH69972.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 482

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y    +S      FK  + +  Y    S+G+ + R++ A+I +  D +GI
Sbjct: 225 GRALQAGTSHYLAQNFSKQFEIQFKTENNELDYAYQTSWGV-STRLLGAIIMTHGDNRGI 283

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P  VAP +I ++ + A+ ++     C+ +Y  LS+    V  D   +  G + + +++
Sbjct: 284 IIPPRVAPIQIDVLELFANKNKEVHTYCDNLYKDLSR-KFRVRLDSSDKGPGFKASNSEI 342

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G PL++ VG K + +  V I  R T  + ++   EV
Sbjct: 343 QGVPLRIEVGPKDIENKSVTIVRRDTLEKINIKQSEV 379



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 17/153 (11%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEM---LRLADRN-DKAMIY 106
           N+N   RE+    G   + +P L    L+  E      +  E+    ++ D++ D+ +  
Sbjct: 57  NLNECFREK----GVQNVYLPLLIPEKLFNKEKDHIAGFNPELATITKVGDKDLDEKVFI 112

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E +  D+F++ I+SY++LP  + Q     R E +     +RSREFL ++ ++    
Sbjct: 113 RPTSEVLFADLFKNSIESYKDLPMIYNQWANVVRWE-KTTNPFLRSREFLWQEGHTCHSN 171

Query: 167 P-------EGSKHSYNKMFVSYLRIFHRLGLKS 192
           P       +G   +Y+K   ++L I   +G K+
Sbjct: 172 PLEARKFTKGMISTYSKFLKNFLAIPTIIGKKT 204


>gi|313247748|emb|CBY15872.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G    + +   IR E  + G  E+  P + +++LW  SG +  Y  +M  
Sbjct: 320 SAGSCFWLPRGAVIYNRLQDFIRSEYRKRGFKEVVTPNIFNSELWKTSGHWQHYEDDMFT 379

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +DK  +  P +      +F S ++SY+ LP  F    +  R+EL     G+ R R 
Sbjct: 380 FKVEDDKWAM-KPMNCPGHCVMFGSRLRSYKELPLRFADFGVLHRNELSGALSGLTRVRR 438

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 439 FQQDDAHIF 447


>gi|213650865|ref|ZP_03380918.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 622

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591


>gi|262043503|ref|ZP_06016623.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039149|gb|EEW40300.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 530

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 5/193 (2%)

Query: 13  ENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   +AE   H+ + R   + H   ++ G   W P G     ++ A +R      G +E+
Sbjct: 245 EKTAEAEKRDHRKLGRELDLFHFQDNAPGAVFWHPRGWTIFQSLIAYMRSRHEVAGYVEV 304

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           + P +    LW  SG +D+Y   M      + +     P +      +F+  IKSYR+LP
Sbjct: 305 NTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFKYGIKSYRDLP 364

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +     R E      G++R R F   DA+ F  T +  +     +    L I+ + 
Sbjct: 365 VRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTLQQVEGECKSILQLVLDIYKQF 423

Query: 189 GLKSIPMRAESGP 201
           G + + ++  + P
Sbjct: 424 GFEEVAIKLSTRP 436


>gi|213161901|ref|ZP_03347611.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 530

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 144 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 203

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 204 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 262

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 263 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 319

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 320 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 358

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 359 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 408

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 409 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 462

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 463 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 499


>gi|294010776|ref|YP_003544236.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292674106|dbj|BAI95624.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 668

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 14/146 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G   W P G      + A +R   +  G  E+  P +  A  W +SG +  Y +
Sbjct: 268 LQQEAHGSVFWHPKGYIIWRALEAYMRRAIDDAGYREVKTPQVMDARQWEQSGHWGKYRE 327

Query: 92  EMLRLADR-----------NDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D            +D A  M   P +      IFR  IKSYR+LP  FY+    
Sbjct: 328 NMFVIPDEVPNVEDEGPLVSDDADWMALKPMNCPAHVLIFRQGIKSYRDLPLRFYENGCC 387

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSF 163
            R+E      G+MR R+F   DA+ F
Sbjct: 388 HRNEPHGALHGLMRVRQFTQDDAHIF 413


>gi|159904581|ref|YP_001548243.1| prolyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|259511605|sp|A9A787|SYP_METM6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159886074|gb|ABX01011.1| prolyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 460

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G +   G  ++      F+  DG+  +V    YGI   R +A++I    D KG+
Sbjct: 212 GKTMQIGTVHNLGQNFAKTFELEFETPDGEKDFVYQTCYGISD-RAIASLISVHGDEKGL 270

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  VAP +I LI +  K  +++  D  +++  R  K    V  DD   + G ++   +
Sbjct: 271 VIPVDVAPIQIVLIPLLFKGKEEIVMDKIKEL-NRTLKSEFRVLLDDRDIRPGRKYNDWE 329

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + G PL++ +G + + + +  I  R TG
Sbjct: 330 IKGVPLRIELGPRDIENGQALIVRRDTG 357



 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP G K       I+R+  + T   E   P L   +L  + G +    ++ +  
Sbjct: 24  KGCGVYLPYGFKIRRYSFEILRKLLDETNHDETLFPMLIPENLLAKEGEHIKGFEDEVFW 83

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                K      +   PT E  M  + +  IK + +LP   YQ+   FR E +    ++R
Sbjct: 84  VTHGGKTPLEVKLALRPTSETTMYYMMKQWIKVHTDLPMKLYQVVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPI-GGDLSH 208
            RE +  K+A++   T E       +    Y   F  + +   I  R E     G D + 
Sbjct: 144 LREIMSFKEAHTAHATKEDCDAQITEALNLYGEFFDEICVPYIISKRPEWDKFPGADYTM 203

Query: 209 EFIVLADTGET----------QVFCSKDFMDFPIPSENTDF 239
            F  +   G+T          Q F     ++F  P    DF
Sbjct: 204 AFDTIYPDGKTMQIGTVHNLGQNFAKTFELEFETPDGEKDF 244


>gi|323333338|gb|EGA74735.1| YHR020W-like protein [Saccharomyces cerevisiae AWRI796]
          Length = 674

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 135/338 (39%), Gaps = 70/338 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++SYR+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 291 PTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTA 350

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y  ++    L ++P                +V     E + F   DF
Sbjct: 351 KDAEEEVLQILDFYAGVYEE--LLAVP----------------VVKGRKTEKEKFAGGDF 392

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              +  E +                  +P+    + RGI+    
Sbjct: 393 ------------------TTTCEGY------------------IPQ----TGRGIQGATS 412

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +   G DH   +    S+G+ + RV+  ++    D KG++ P  V
Sbjct: 413 HHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGL-STRVIGVMVMIHSDNKGLVIPPRV 471

Query: 345 APFKISLINIKAHDQVCRDACEKIY-------ARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           + F+  +I +    +   +  + I+       +RL KVG   F D +     G +F+  +
Sbjct: 472 SQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYNDNYTPGWKFSQYE 531

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G P+++ +G K +  ++V +  R    +  +S +E+
Sbjct: 532 LKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDEL 569


>gi|260655129|ref|ZP_05860617.1| proline--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260630051|gb|EEX48245.1| proline--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 478

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 131/354 (37%), Gaps = 85/354 (24%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           ++ ++ +I  PT E V+  ++   I+S+R+LP    Q     R E RPR   +R+ EFL 
Sbjct: 98  EKLEEPLIVRPTSETVIGYMYSKWIQSWRDLPLLINQWANVMRWEKRPRL-FLRTSEFLW 156

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           ++ ++   T E +     +M    L ++ R+    + +    G            +   G
Sbjct: 157 QEGHTAHATSEEAVQETERM----LEVYRRIMTDDLALPVVEG------------VKSAG 200

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E           FP   E    + ++S                                 
Sbjct: 201 ER----------FPGALETYTCETMVS--------------------------------- 217

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  +S   +  F+  D    Y    S+G+ + R++ AVI +  D  G
Sbjct: 218 DTKAVQAGTSHFLGQNFSKAFNIQFQAQDETMQYAWTTSWGV-STRLIGAVIMTHSDADG 276

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD- 396
           +I P  VAP K  +I I   +   ++   K  A L++         + + +G +F   D 
Sbjct: 277 LIIPPHVAPVKAVVIPISKDEAKSKELAGKA-AELAQ--------SLNKVLGGRFVKVDE 327

Query: 397 --------------LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                           G PL++ +G K  +   V +  R TG + D +  E+  
Sbjct: 328 QFYMRPSDRFFYHLQKGVPLRIELGEKDDAAGTVRLVRRDTGEKLDAAQGELTT 381


>gi|58263294|ref|XP_569057.1| threonine-tRNA ligase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108684|ref|XP_776995.1| hypothetical protein CNBB5220 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259678|gb|EAL22348.1| hypothetical protein CNBB5220 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223707|gb|AAW41750.1| threonine-tRNA ligase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 772

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP+G +  + + + I++E  + G  E+  P + +A+LW  SG + +Y ++M +
Sbjct: 381 SPGSAFFLPMGMRIYNTLMSFIKDEYFKRGFSEVGSPNIFNANLWKTSGHWQNYAEDMFQ 440

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L   +++ +   P +      IF +  +SY+ LP  F +  +  R+E      G+ R R 
Sbjct: 441 L-KADEEQLALKPMNCPGHCLIFDARERSYKELPLRFAEFGVLHRNEASGALSGLTRVRR 499

Query: 155 FLMKDAYSFDLTPE 168
           F+  DA+ F  TP+
Sbjct: 500 FVQDDAHIF-CTPD 512


>gi|329954822|ref|ZP_08295839.1| proline--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328526926|gb|EGF53937.1| proline--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 497

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  + ++     EK   I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNAEMLAKIDEKIAGIVAKLKSMGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++ G P+++++G + + ++ +E+  R T  +E  S + +  Y
Sbjct: 355 YEVKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEY 397



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|297663737|ref|XP_002810324.1| PREDICTED: LOW QUALITY PROTEIN: threonyl-tRNA synthetase,
           mitochondrial-like [Pongo abelii]
          Length = 719

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 170/430 (39%), Gaps = 64/430 (14%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E  R G  E+  PT
Sbjct: 297 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPT 356

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 357 LFSTKLWKQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 416

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F    +S+R LP          R E      G+ R R F   DA+ F  T +    +  +
Sbjct: 417 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQ--LEAEIQ 474

Query: 177 MFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
             + +LR ++  LG  S  +   + P G         L D       C  D  +  +   
Sbjct: 475 SCLDFLRSVYAVLGF-SFHLALSTRPSG--------FLGDP------CLWDQAEQVLKQA 519

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             +F +   LNS      A Y    DVH   L D+L        R  + G I      + 
Sbjct: 520 LKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---QLDFQ 563

Query: 296 LPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP+     +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I
Sbjct: 564 LPLRFDLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQVVVI 620

Query: 353 NIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +    ++  ++A + + A       D    D G  +  +   A L  +  Q +VG K  
Sbjct: 621 PVGTEQEEYAKEAQQSLRAAGLVSDLDA---DSGLTLSRRVRRAQLAHYNFQFVVGQKEQ 677

Query: 412 SDSKVEIKHR 421
           S   V I+ R
Sbjct: 678 SKRTVNIRTR 687


>gi|282934500|ref|ZP_06339755.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|281301447|gb|EFA93736.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 644

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 164/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 260 GLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  E  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALEQVQEEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFDL----SYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N+ AH +  +    K+   L K G     D   E++G +
Sbjct: 534 KGAFPTW---LAPEQVEIIPVNLDAHGEYAK----KVRDELLKHGFRAEVDFRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G   ++ + V ++   T  +E MSL++ I+
Sbjct: 587 IRESQTQKVPYTLVLGDDEMNSNAVNVRPYGTEKQESMSLDKFID 631


>gi|222094191|ref|YP_002528248.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221238246|gb|ACM10956.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus Q1]
          Length = 476

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D  G+
Sbjct: 223 GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGL 281

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F   ++ 
Sbjct: 282 VMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKVA-RVKIDASNKTPGWKFNEYEMK 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K +  ++V +  R T  +E ++++++
Sbjct: 341 GIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQL 376


>gi|218131142|ref|ZP_03459946.1| hypothetical protein BACEGG_02747 [Bacteroides eggerthii DSM 20697]
 gi|317476982|ref|ZP_07936224.1| prolyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|217986662|gb|EEC52996.1| hypothetical protein BACEGG_02747 [Bacteroides eggerthii DSM 20697]
 gi|316906775|gb|EFV28487.1| prolyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 497

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  + ++     EK   I A+L  +G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMGISVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++ G P+++++G + + ++ +E+  R T  +E  S + +  Y
Sbjct: 355 YEVKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEY 397



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + ++ +I  PT E ++ + +++ I SYR+LP    Q    FR E+R R   +R+ EFL
Sbjct: 114 AAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRTRL-FLRTAEFL 172

Query: 157 MKDAYSFDLT 166
            ++ ++   T
Sbjct: 173 WQEGHTAHAT 182


>gi|294632148|ref|ZP_06710708.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835481|gb|EFF93830.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 442

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 158/391 (40%), Gaps = 46/391 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   IR+ + R G   +  P L   +L+  SG +D Y  +M    
Sbjct: 57  GLPYWLPDGATVRHTLEEYIRDAERRAGYRHVYSPVLGKRELYEISGHWDHYSDDMFPPM 116

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D   + ++  P+       I+RS   S+R LP    ++   +R EL     G+ R R   
Sbjct: 117 DLGGEQVVLRPSLCPHHAVIYRSRAHSHRELPLRMAELGGMYRSELSGVLGGLTRVRAIQ 176

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLAD 215
           + DA+ F  T +              R +  LG+     R    GP G     +++   +
Sbjct: 177 LNDAHIF-CTLDQVAEEAGAALEMIRRAYEALGVTPARYRLSLPGPGG-----KYVAAPE 230

Query: 216 TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                     + +D   +P E  + +             A Y    DV   ++ DS    
Sbjct: 231 KWRRATALLTEVLDRSGLPYEAAEGE------------AAFYGPKIDV---QVADSAGRE 275

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESS 332
             +S   ++    F+   ++ L     + GADG  H  V +    IG++ R VA ++E +
Sbjct: 276 STLSTVQVD----FHQPERFDL----HYIGADGARHRPVMVHRSIIGSVERAVAHLVE-A 326

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMGEQIGS 390
           H G    W   +AP ++ ++ + A +       E +  R + +G   ++   + G  +G+
Sbjct: 327 HGGAFPAW---LAPVQLVVLPVSAAEL---PQAEALARRCTDLGLRAEIAAPERG-TLGA 379

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   + L+  P Q ++G+K  +D  V ++ R
Sbjct: 380 RIRASRLV--PYQAVIGAKEATDDHVSLRLR 408


>gi|300778952|ref|ZP_07088810.1| proline--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300504462|gb|EFK35602.1| proline--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 545

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +GK  +    S+G  + R++ A+I +  D  G+
Sbjct: 287 GKALQAGTSHFLGQNFAKAFDVKFTNKEGKIEHAWATSWGT-STRLMGALIMTHSDDFGL 345

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAV 394
           + P ++AP ++ ++ I K  +Q+    +    I A+L   G  V +D D   + G +FA 
Sbjct: 346 VLPPTLAPIQVVIVPIFKGEEQLEQISEVALDIQAKLRAKGISVKFDNDTQNKPGWKFAE 405

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++ +G + + +  VEI  R    +E  S+E + +Y
Sbjct: 406 YELKGVPVRIAMGPRDLENKSVEIARRDNLTKEVRSIEGLDSY 448



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 169 EEELIVRPTSEAIIWNTYKNWIQSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEG 227

Query: 161 YS 162
           ++
Sbjct: 228 HT 229


>gi|326623540|gb|EGE29885.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 622

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591


>gi|224370824|ref|YP_002604988.1| threonyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|259516390|sp|C0QAP1|SYT_DESAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|223693541|gb|ACN16824.1| ThrS2 [Desulfobacterium autotrophicum HRM2]
          Length = 636

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +++E   RD      K+  R G+   HQ + G+  +   G +  + + A  R+E 
Sbjct: 225 KAYLHLIEEAKKRD----HRKIGTRMGLFSFHQEAAGMPFFHAKGMEMWNELLAYWRDEH 280

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRS 120
              G +E   P + S  LW +SG +++Y + M   + D  + A+   P +      ++++
Sbjct: 281 RAAGYVETKTPVMMSRHLWEKSGHWENYRENMYTSVVDGEEYAI--KPMNCPGGMLLYKT 338

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP    +I L  R EL     G+ R R F   DA+ F +TPE  +     +  
Sbjct: 339 ESHSYRDLPLRAGEIGLVHRHELSGALSGLFRVRAFHQDDAHIF-MTPEQIESEILGVLE 397

Query: 180 SYLRIFHRLGL 190
              RI+ R GL
Sbjct: 398 LVERIYSRFGL 408


>gi|294499151|ref|YP_003562851.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294349088|gb|ADE69417.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 405

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 182/443 (41%), Gaps = 58/443 (13%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H+ +   L   M  + + G+  +LP G    + +    +++  + G  E+  P 
Sbjct: 6   EAEKRNHQKLGQELELFMSIEEAPGMPFFLPNGMIIRNELENYWKQKHYKAGYQEIKTPI 65

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +   +LW +SG ++ Y + M   ++ +++     P +      +F S  +SYR LP  + 
Sbjct: 66  MMKQELWEQSGHWEHYHENMY-FSNVDEQNYAIKPMNCPGAILLFSSKRRSYRELPIRYA 124

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF----DLTPEGSK-HSYNKMFVSYLRIFHR 187
           ++ L  R EL     G++R R F   DA+ F     +  E S+  ++   F S+    ++
Sbjct: 125 ELGLVHRHELSGSLNGLLRVRSFTQDDAHLFVELSQIEAEISRILAFIHDFYSHFGFDYK 184

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           + L + P +       G++  E    A+     V   K  +D+ +   +  F        
Sbjct: 185 VELSTRPEK-----FMGNI--ETWNQAEKSLQSVLSEKG-LDYQVNEGDGAF-------- 228

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKG 304
                   Y    D H   + DSL        R  + G +   F    K+       + G
Sbjct: 229 --------YGPKIDFH---ILDSL-------GRSWQCGTVQLDFLMPEKF----DCMYIG 266

Query: 305 ADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D K H   M    I G++    A++   ++G+  +W   +AP ++ L+ I A   V  +
Sbjct: 267 EDNKPHRPVMIHRAIYGSVERFMAILIEHYEGQFPLW---LAPVQLKLLPI-APPHV--E 320

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G  V  DD  E+IG +   A++   P   ++G K V +  + ++    
Sbjct: 321 YAYKVKHELELKGYRVEVDDRIEKIGLKIREAEMQKVPYMAVIGDKEVENESLAMRKHGK 380

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                +S+EE   + +   ++NR
Sbjct: 381 KNIGTVSMEEAAVHLNKEKNSNR 403


>gi|205352944|ref|YP_002226745.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238690498|sp|B5RAX3|SYT_SALG2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|205272725|emb|CAR37641.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628018|gb|EGE34361.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMGRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|158321007|ref|YP_001513514.1| threonyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141206|gb|ABW19518.1| threonyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 636

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 155/404 (38%), Gaps = 57/404 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +   G   + P G    + +    REE  + G  E+  P + +  LW +SG +D Y +
Sbjct: 257 LQEEGPGFPFFHPRGMVLRNALENFWREEHVKRGYDEIKTPIILNEKLWRQSGHWDHY-Q 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D      P +      ++     SYR+ P    ++ +  R EL     G+M
Sbjct: 316 ENMYFTKIDDGDYAIKPMNCPGSILMYNRKKHSYRDFPIRMGELGIVHRHELSGALHGLM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F   DA+ F L PE  K     +  FV Y  +++  G K                 
Sbjct: 376 RVRNFTQDDAHLFVL-PEQIKEEIIGIIDFVDY--VYNIFGFKY---------------- 416

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
             I L+   E  +   +++ +  I S     D+      I E   A Y    D H E   
Sbjct: 417 -HIELSTRPENSMGTDEEW-ELAIGSLKGALDEKELSYKINEGDGAFYGPKIDFHLEDC- 473

Query: 269 DSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAM 322
                          +G  +  GT    + +P      + GADG++H  + +     G++
Sbjct: 474 ---------------IGRTWQCGTIQLDFQMPQRFDMNYVGADGENHRPIMLHRVIFGSV 518

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVF 380
               A++   + GK   +P  +AP ++ ++ I  K H+        K+   +   G  V 
Sbjct: 519 ERFIAILIEHYAGK---FPAWLAPIQVQILPIADKHHEYAI-----KLEREMKARGIRVE 570

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            D   E+IG +   A L   P  +++G K +   +V ++ R  G
Sbjct: 571 VDSRNEKIGYKIREAQLSKVPYMLVIGDKEMEAGEVAVRSRDRG 614


>gi|256269239|gb|EEU04564.1| YHR020W-like protein [Saccharomyces cerevisiae JAY291]
          Length = 688

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 134/338 (39%), Gaps = 70/338 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++SYR+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 291 PTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTA 350

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y  ++    L ++P                +V     E + F   DF
Sbjct: 351 KDAEEEVLQILDFYAGVYEE--LLAVP----------------VVKGRKTEKEKFAGGDF 392

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              +  E +                  +P+    + RGI+    
Sbjct: 393 ------------------TTTCEGY------------------IPQ----TGRGIQGATS 412

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +   G DH   +    S+G+ + RV+  ++    D KG++ P  V
Sbjct: 413 HHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGL-STRVIGVMVMIHSDNKGLVIPPRV 471

Query: 345 APFKISLINIKAHDQVC-------RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           + F+  +I +    +         ++    + +RL KVG   F D +     G +F+  +
Sbjct: 472 SQFQSVVIPVGITKKTSEEQRKHIQETARSVESRLKKVGIRAFGDYNDNYTPGWKFSQYE 531

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G P+++ +G K +  ++V +  R    +  +S +E+
Sbjct: 532 LKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDEL 569


>gi|229011636|ref|ZP_04168819.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228749594|gb|EEL99436.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 639

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE QN     E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQNEYNYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ + K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDHKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|332159170|ref|YP_004424449.1| prolyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034633|gb|AEC52445.1| prolyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 480

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 3/168 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   ++   +  ++  DG   YV   ++G+   R++AAVI    D +GI
Sbjct: 220 GRTLQIGTMHNYKQNFAKAYNIMYEKEDGTHDYVHQTTFGMSE-RLLAAVIAIHGDDRGI 278

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P ++AP ++ ++ I  K  ++      ++I   L   G  V  D   ++ G +F   +
Sbjct: 279 VLPPTIAPIQVVIVPIPKKGSEEEVYKYAKEIEEELKMAGIRVHLDLRDKRPGWKFYDWE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L G P++V VG   V +S V +  R    +  +  EE+++     F +
Sbjct: 339 LKGVPVRVEVGPIDVQNSTVVLARRDKLEKITVKREELVDRVRELFDD 386



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  WLP G K + N+   I EE  RTG  E+  P L    +   E+     +  E+  
Sbjct: 32  KGMNVWLPYGLKIMRNIERFIHEEMERTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFW 91

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +I  PT E  M  +F   I+S+ +LP   YQI   +R E +    ++R
Sbjct: 92  VTHAGHEPLDVRLILRPTSETAMYSMFALWIRSHADLPLKVYQIVNVYRYETKHTRPLIR 151

Query: 152 SREF 155
            RE 
Sbjct: 152 VREI 155


>gi|323304725|gb|EGA58486.1| YHR020W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 687

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 135/338 (39%), Gaps = 70/338 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++SYR+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 290 PTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTA 349

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y  ++    L ++P                +V     E + F   DF
Sbjct: 350 KDAEEEVLQILDFYAGVYEE--LLAVP----------------VVKGRKTEKEKFAGGDF 391

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              +  E +                  +P+    + RGI+    
Sbjct: 392 ------------------TTTCEGY------------------IPQ----TGRGIQGATS 411

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +   G DH   +    S+G+ + RV+  ++    D KG++ P  V
Sbjct: 412 HHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGL-STRVIGVMVMIHSDNKGLVIPPRV 470

Query: 345 APFKISLINIKAHDQVCRDACEKIY-------ARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           + F+  +I +    +   +  + I+       +RL KVG   F D +     G +F+  +
Sbjct: 471 SQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYNDNYTPGWKFSQYE 530

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G P+++ +G K +  ++V +  R    +  +S +E+
Sbjct: 531 LKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDEL 568


>gi|256850831|ref|ZP_05556220.1| threonyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260661042|ref|ZP_05861956.1| threonyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|256615893|gb|EEU21081.1| threonyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260547979|gb|EEX23955.1| threonyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
          Length = 643

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 164/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      +++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  E  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALEQVQEEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFDL----SYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N+ AH +  +    K+   L K G     D   E++G +
Sbjct: 533 KGAFPTW---LAPEQVEIIPVNLDAHGEYAK----KVRDELLKHGFRAEVDFRNEKMGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G   ++ + V ++   T  +E MSL++ I+
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNSNAVNVRPYGTEKQESMSLDKFID 630


>gi|229167201|ref|ZP_04294942.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228616239|gb|EEK73323.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 639

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE QN     E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQNEYNYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ + K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDHKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|6321808|ref|NP_011884.1| hypothetical protein YHR020W [Saccharomyces cerevisiae S288c]
 gi|731640|sp|P38708|YHI0_YEAST RecName: Full=Putative prolyl-tRNA synthetase YHR020W; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|500692|gb|AAB68873.1| Yhr020wp [Saccharomyces cerevisiae]
 gi|285809922|tpg|DAA06709.1| TPA: hypothetical protein YHR020W [Saccharomyces cerevisiae S288c]
          Length = 688

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 135/338 (39%), Gaps = 70/338 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++SYR+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 291 PTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTA 350

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y  ++    L ++P                +V     E + F   DF
Sbjct: 351 KDAEEEVLQILDFYAGVYEE--LLAVP----------------VVKGRKTEKEKFAGGDF 392

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              +  E +                  +P+    + RGI+    
Sbjct: 393 ------------------TTTCEGY------------------IPQ----TGRGIQGATS 412

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +   G DH   +    S+G+ + RV+  ++    D KG++ P  V
Sbjct: 413 HHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGL-STRVIGVMVMIHSDNKGLVIPPRV 471

Query: 345 APFKISLINIKAHDQVCRDACEKIY-------ARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           + F+  +I +    +   +  + I+       +RL KVG   F D +     G +F+  +
Sbjct: 472 SQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYNDNYTPGWKFSQYE 531

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G P+++ +G K +  ++V +  R    +  +S +E+
Sbjct: 532 LKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDEL 569


>gi|224541524|ref|ZP_03682063.1| hypothetical protein CATMIT_00694 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525561|gb|EEF94666.1| hypothetical protein CATMIT_00694 [Catenibacterium mitsuokai DSM
           15897]
          Length = 585

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 157/381 (41%), Gaps = 48/381 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      ++  I  ++   G   +  P+L +  L+ +SG +  Y  +M   
Sbjct: 201 KGLPMWLPNGFTVRRLLSDYIMNKELELGYEHVMTPSLGNVKLYKKSGHWAHYKDDMFPA 260

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +D+A +  P +      +++S + SYR+LP    +I   FR E      G+ R+R F
Sbjct: 261 MELDDEAYVLRPMNCPHHMVMYKSTLHSYRDLPVRIAEIANDFRFEASGALTGIERARAF 320

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              D++ F   P+     +  +    L ++   G K    R              + L D
Sbjct: 321 TQNDSHIF-CRPDQIAQEFKNVAHLILDVYKDFGFKDYSFR--------------LSLRD 365

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
               + +   D  +    SEN        L  ++++    +    +   E  F     + 
Sbjct: 366 KNNKEKYFGND--ELWEKSEN-------ELREVLKEMDVEF---YEAEGEAAFYGPKLDV 413

Query: 276 RVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAM-RVVAAV 328
           +V +    +GH     T    Y LP     T+   +G K   V +    +G++ R +A +
Sbjct: 414 QVKS---ALGHDVTLSTIQLDYQLPERFELTYVDENGDKVRPVVIHRAILGSLDRFIAFL 470

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +E +  G   +W   +AP ++ +I +K   HD+  ++    + A+L K    V  D+  E
Sbjct: 471 LEETK-GNLPLW---LAPTQVQVIPVKLEYHDEYAKE----VVAKLRKAHFRVNNDNRDE 522

Query: 387 QIGSQFAVADLLGFPLQVIVG 407
           ++G +   A L   P Q+++G
Sbjct: 523 KLGYRIREAQLKKIPYQLVLG 543


>gi|161614260|ref|YP_001588225.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|194446059|ref|YP_002040590.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198243456|ref|YP_002215793.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857160|ref|YP_002243811.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|189083620|sp|A9N243|SYT_SALPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690315|sp|B5FJA8|SYT_SALDC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690400|sp|B5QVW8|SYT_SALEP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693615|sp|B4T4M8|SYT_SALNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161363624|gb|ABX67392.1| hypothetical protein SPAB_02005 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404722|gb|ACF64944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197937972|gb|ACH75305.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206708963|emb|CAR33293.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|15897489|ref|NP_342094.1| prolyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284174806|ref|ZP_06388775.1| prolyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|74581610|sp|Q9UWX2|SYP_SULSO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6015904|emb|CAB57731.1| prolyl (glutamyl) tRNA synthetase [Sulfolobus solfataricus P2]
 gi|13813734|gb|AAK40884.1| Prolyl -tRNA synthetase (proS) [Sulfolobus solfataricus P2]
 gi|261602249|gb|ACX91852.1| prolyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 481

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G + + G  +S  +    +  DG   Y    SYGI   R VA+VI    D  G 
Sbjct: 222 GRAMQIGTVHHLGQNFSKALDFKIQKKDGSLDYPHQTSYGISD-RAVASVIAIHGDDHGP 280

Query: 339 IWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQF 392
           + P SVAP K+ +I I A +     QV + + E I    +K       D   E+  G +F
Sbjct: 281 VLPPSVAPIKVVVIPIPAKNEEETQQVMKYSIE-ICEMFNKNNITCLTDQDTEKTPGEKF 339

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            + ++ G P+++ +G + +    V IK R       +  EE IN
Sbjct: 340 YIWEIKGVPIRLEIGPRELISGTVFIKRRDNFKSYTVRKEEAIN 383



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LR G  + +     KG+  W+P G K   N+  IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPIKGMGVWMPYGFKLRQNIIGIIRNFLDSTGHEEVLFPLLIPEDLLR 78

Query: 82  -ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +        D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSTDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF  L +
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQKQVEEAIEIYKKIFDTLTI 193


>gi|330752453|emb|CBL87403.1| threonyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 646

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/449 (19%), Positives = 169/449 (37%), Gaps = 63/449 (14%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T    +  +G+  WLP G      +   +++ Q +
Sbjct: 229 KEHLALLEEAKKRDHRKLGKQLELFT-FSKKVGQGLPLWLPNGAALRSRLEDFLKKAQVK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSH 121
            G   +S P +   +L+V SG Y+ YG++  +  +  + ++  +  P +     +I+   
Sbjct: 288 AGYEMVSTPHIGQKELYVTSGHYEKYGEDSFQPIETPKAEEEFLLKPMNCPHHCEIYNFK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +   
Sbjct: 348 PYSYKELPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDSEFKNVIDL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG ++   +              + L D    + +                  
Sbjct: 407 VLYVFRSLGFENFTAQ--------------VSLRDPKTPEKYIGS--------------- 437

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT 292
                   V+ W     A  +   +K  D + E    +  G +        +G  +  GT
Sbjct: 438 --------VDNWDKSEKAIINAAEDKGLDYVIETGEAAFYGPKLDFMVKDALGRSWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP     T+KGAD + H  V +     G++    A++     G   +W   + P
Sbjct: 490 IQVDYNLPERFDLTYKGADNESHRPVMIHRAPFGSLERFVAILLEHTAGNFPLW---LMP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ ++ I  +        +K+   L         DD  E +G +   A++   P  +IV
Sbjct: 547 QQVVILTISEN---YEKYAQKVLNLLEINEIRGLIDDRSETMGKKIRDAEIKKIPYMIIV 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +    + + ++        ++SLE  +
Sbjct: 604 GEQEEKSATLSVRQHGGEDLGNLSLEAFV 632


>gi|222445506|ref|ZP_03608021.1| hypothetical protein METSMIALI_01146 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435071|gb|EEE42236.1| hypothetical protein METSMIALI_01146 [Methanobrevibacter smithii
           DSM 2375]
          Length = 608

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 161/426 (37%), Gaps = 88/426 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP----------TLQSADLWVESGRYD 87
           G   W P G+   D +   +       GA+ +  P           + +A       R D
Sbjct: 215 GNLKWFPKGRLVRDLLADYVYNLVVDQGAMPIETPIFYDLDNEAINVHAAKFGERQYRTD 274

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPR 146
           +    MLR A        +G     VM D F +    ++NLP   Y++    FR E +  
Sbjct: 275 TKKNLMLRFA------CCFGAFR--VMADPFIT----WKNLPAKLYELSTYSFRFEKKGE 322

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F M D +SF      +   ++K                  M  ++G +  D
Sbjct: 323 VVGLKRLRAFTMPDFHSFCADMNSTLEEFSK---------------QTDMCIQTG-VDLD 366

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +++E I  A         +KDF D     EN             ++W   Y+    +   
Sbjct: 367 VNYEIIFRA---------TKDFYD-----EN-------------KEWM--YSIGKKIGKP 397

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-----------MSATFKGADGKDHY-VQ 313
            L + LPE K   +  I+   I Y G     P              T+ G DGK+HY   
Sbjct: 398 VLLEILPERKHYWSCKIDFAAIDYLGRPIENPTVQIDVESGKRFDITYLGEDGKEHYPTI 457

Query: 314 MGSYGIGAM-RVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +     G++ RV+ +++E +    D K  + P  ++P ++ +I +   D   +D   ++Y
Sbjct: 458 LHCSPTGSIERVICSLLEKTAIELDEKAPMLPTWLSPIEVRIITV-GEDH--KDFANELY 514

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +++     V  DD  E +G +   A     P   +VG          +  R TG + DM
Sbjct: 515 DKINAENIRVDVDDRDESVGKKIRNAATEWIPYIFVVGDNEKESGVFSVTVRETGEKVDM 574

Query: 430 SLEEVI 435
           +++E+I
Sbjct: 575 TVDELI 580


>gi|330816669|ref|YP_004360374.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327369062|gb|AEA60418.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 635

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H  + S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLAKQLDLFHMQEESPGMVFWHPKGWTLWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H      +F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGH----VQVFNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF 386


>gi|284919690|emb|CAX65467.1| hypothetical protein [Enterobacter hormaechei]
          Length = 662

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 5/193 (2%)

Query: 13  ENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   +AE   H+ + R   + H   ++ G   W P G     ++ A +R      G +E+
Sbjct: 255 EKTAEAEKRDHRKLGRELDLFHFQDNAPGAVFWHPRGWTIFQSLIAYMRSRHEVAGYVEV 314

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           + P +    LW  SG +D+Y   M      + +     P +      +F+  IKSYR+LP
Sbjct: 315 NTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFKYGIKSYRDLP 374

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +     R E      G++R R F   DA+ F  T +  +     +    L I+ + 
Sbjct: 375 VRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTLQQVEGECKSILQLVLDIYKQF 433

Query: 189 GLKSIPMRAESGP 201
           G + + ++  + P
Sbjct: 434 GFEEVAIKLSTRP 446


>gi|62179922|ref|YP_216339.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168263848|ref|ZP_02685821.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463268|ref|ZP_02697199.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|73919823|sp|Q57PV3|SYT_SALCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62127555|gb|AAX65258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|195634423|gb|EDX52775.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205347615|gb|EDZ34246.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|322714388|gb|EFZ05959.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|320451414|ref|YP_004203510.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320151583|gb|ADW22961.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 659

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-- 93
            KG+  WLP G    + + A +REEQ R G   ++ P + S +L+  SG Y  Y +    
Sbjct: 270 GKGLVLWLPKGNVIREELMAFMREEQIRRGYQLVTTPHIGSLELYRTSGHYPYYAESQFP 329

Query: 94  -LRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
            +   +R  ++  +  P +      I+    +SYR LP    +    +R E      G+ 
Sbjct: 330 PISFKERGEEEEYLLKPMNCPHHIRIYAFKKRSYRELPLRLAEFGTVYRYEKAGELLGLT 389

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           R R F   DA+ F  TPE  K  +  +    L++   LGLK
Sbjct: 390 RVRGFTQDDAHLF-CTPEQVKEEFLGVLDLVLKVLSTLGLK 429


>gi|237796784|ref|YP_002864336.1| prolyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259511585|sp|C3KUV8|SYP_CLOB6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|229260679|gb|ACQ51712.1| proline--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 478

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 139/357 (38%), Gaps = 77/357 (21%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G  D        LA+R    +   PT E +  + +   ++SY++LP  + Q    +
Sbjct: 97  WVTHGGDDE-------LAER----LCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVV 145

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           ++    RP    +R+ EFL ++ ++   T E ++    K+   Y R+             
Sbjct: 146 RWEKTTRP---FLRTTEFLWQEGHTIHETKEEAESHSLKILNMYSRLCE----------- 191

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  D+    +V+    E + F   D              D  ++ S++    A  A
Sbjct: 192 -------DMLAMPVVMGKKTEKEKFAGAD--------------DTYTIESLMHDGKALQA 230

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            TS                            Y G  +S   +  F   +GK  Y    ++
Sbjct: 231 GTS---------------------------HYLGQNFSKAFAIQFSDRNGKLEYPHYTTW 263

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +   R++ A+I    D  G+  P  +AP +  +I +  H +   +  +++  RL+KV  
Sbjct: 264 AV-TTRLIGAIIMVHGDDSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKERLAKV-V 321

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            V  DD  +  G +++  ++ G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 322 RVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEI 378


>gi|182419388|ref|ZP_02950640.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237666667|ref|ZP_04526652.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376719|gb|EDT74291.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657866|gb|EEP55421.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 643

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 6/188 (3%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL  L+E   RD      +L L T    +  +G+   +P G K +  +   + +E+ + G
Sbjct: 229 FLEALEEAKKRDHNKLGRELKLFT-TDEKVGQGLPLLMPKGAKIVQTLQRWVEDEEEKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M  L D  ++D+     P        I+ +   
Sbjct: 288 YVLTKTPLMAKSDLYKVSGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPFQYTIYNAEQH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    FR+E      G++R R+F + D +   +TPE  +  +  +     
Sbjct: 348 SYRDLPIRYAETSTLFRNEASGEMHGLIRVRQFTLADGHLI-VTPEQLEEEFKGVVELIQ 406

Query: 183 RIFHRLGL 190
            +   LG+
Sbjct: 407 YLMETLGI 414


>gi|254252558|ref|ZP_04945876.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895167|gb|EAY69047.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 635

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 371 GLMRVRGFVQDDAHIF 386


>gi|256394768|ref|YP_003116332.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256360994|gb|ACU74491.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 409

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   IR  + R G   +  P L   +L+  SG +  Y ++M    
Sbjct: 27  GLPYWLPDGAVVRHAVEEYIRSVERRAGYQHVYSPVLGKRELYEISGHWSHYSEDMFPPM 86

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D   + M+  P+       I+RS   SYR LP    +I   FR E+     G+ R R   
Sbjct: 87  DLGAEQMVLRPSLCPTHALIYRSRAHSYRELPLRMAEIGGMFRSEMSGALGGLTRVRAIT 146

Query: 157 MKDAYSF 163
           + DA+ F
Sbjct: 147 LNDAHIF 153


>gi|16760562|ref|NP_456179.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141677|ref|NP_805019.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|167552305|ref|ZP_02346058.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168239001|ref|ZP_02664059.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168821978|ref|ZP_02833978.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194736705|ref|YP_002114350.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251550|ref|YP_002146704.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|200390235|ref|ZP_03216846.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204927743|ref|ZP_03218944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213423451|ref|ZP_03356434.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426331|ref|ZP_03359081.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852224|ref|ZP_03381756.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238910851|ref|ZP_04654688.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|22654121|sp|Q8Z6I2|SYT_SALTI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690055|sp|B5F7G2|SYT_SALA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693694|sp|B4TUF0|SYT_SALSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25292951|pir||AC0706 threonine-tRNA ligase (EC 6.1.1.3) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502858|emb|CAD02020.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137305|gb|AAO68868.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194712207|gb|ACF91428.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197215253|gb|ACH52650.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197288252|gb|EDY27637.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199602680|gb|EDZ01226.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323085|gb|EDZ08281.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323017|gb|EDZ10856.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205341550|gb|EDZ28314.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086187|emb|CBY95961.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322620023|gb|EFY16896.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622333|gb|EFY19178.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627857|gb|EFY24647.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633045|gb|EFY29788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636709|gb|EFY33412.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641265|gb|EFY37906.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645254|gb|EFY41783.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650195|gb|EFY46609.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655769|gb|EFY52071.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660095|gb|EFY56334.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665338|gb|EFY61526.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669596|gb|EFY65744.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673522|gb|EFY69624.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677448|gb|EFY73512.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679887|gb|EFY75926.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687359|gb|EFY83331.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192477|gb|EFZ77707.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198668|gb|EFZ83769.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204096|gb|EFZ89110.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208715|gb|EFZ93653.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210228|gb|EFZ95127.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217691|gb|EGA02406.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220245|gb|EGA04700.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223489|gb|EGA07815.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229493|gb|EGA13616.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232716|gb|EGA16812.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240245|gb|EGA24289.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242767|gb|EGA26788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249083|gb|EGA33002.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254416|gb|EGA38233.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255600|gb|EGA39356.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260123|gb|EGA43748.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267113|gb|EGA50598.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271563|gb|EGA54984.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|229133217|ref|ZP_04262049.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228650236|gb|EEL06239.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 639

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE QN     E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQNEYNYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ + K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDHKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|151943962|gb|EDN62255.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190405804|gb|EDV09071.1| hypothetical protein SCRG_04726 [Saccharomyces cerevisiae RM11-1a]
 gi|207344767|gb|EDZ71797.1| YHR020Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259147048|emb|CAY80303.1| EC1118_1H21_0848p [Saccharomyces cerevisiae EC1118]
 gi|323308880|gb|EGA62116.1| YHR020W-like protein [Saccharomyces cerevisiae FostersO]
 gi|323348347|gb|EGA82595.1| YHR020W-like protein [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354780|gb|EGA86614.1| YHR020W-like protein [Saccharomyces cerevisiae VL3]
          Length = 688

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 135/338 (39%), Gaps = 70/338 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++SYR+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 291 PTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTA 350

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y  ++    L ++P                +V     E + F   DF
Sbjct: 351 KDAEEEVLQILDFYAGVYEE--LLAVP----------------VVKGRKTEKEKFAGGDF 392

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              +  E +                  +P+    + RGI+    
Sbjct: 393 ------------------TTTCEGY------------------IPQ----TGRGIQGATS 412

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +   G DH   +    S+G+ + RV+  ++    D KG++ P  V
Sbjct: 413 HHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGL-STRVIGVMVMIHSDNKGLVIPPRV 471

Query: 345 APFKISLINIKAHDQVCRDACEKIY-------ARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           + F+  +I +    +   +  + I+       +RL KVG   F D +     G +F+  +
Sbjct: 472 SQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYNDNYTPGWKFSQYE 531

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G P+++ +G K +  ++V +  R    +  +S +E+
Sbjct: 532 LKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDEL 569


>gi|47220916|emb|CAG03123.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 822

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 157/404 (38%), Gaps = 58/404 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G    D V  + +EE  R G  E++ P + +  LW  SG +  YG  M       D  
Sbjct: 447 PAGCGVADGV-WLFQEEYWRRGFQEVATPNIYNRKLWETSGHWQHYGHNMFSFPVEED-V 504

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      +F    +S+R LP       +  R+EL     G+ R R F   DA+ 
Sbjct: 505 FALKPMNCPGHCLVFSQRPRSWRELPLRLADFGVLHRNELSGTLTGLTRVRRFQQDDAHI 564

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQ 220
           F    +    S  K  + +LR  +++   S  +   + P    GD     I + +  E Q
Sbjct: 565 FCTVEQ--IESEMKGCLDFLRCVYKVFGFSFQLHLSTRPEKFLGD-----IAVWNQAEKQ 617

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVHNEKLFDSLPEN 274
           +                      SLN   E W       A Y    D+   K+ D++   
Sbjct: 618 L--------------------ESSLNQFGEPWKLNPGDGAFYGPKIDI---KIQDAIGRY 654

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESS 332
            + +   ++    F    +++L    TF G DG D    V +    +G++  + A++  +
Sbjct: 655 HQCATVQLD----FQLPLRFNL----TFVGKDGDDRGQPVIIHRAVLGSVERMVAILTEN 706

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           + GK   WP  ++P ++ ++ +   +  C D   K+  + ++ G     D D G  +  +
Sbjct: 707 YAGK---WPLWLSPRQVMVVPV---NPACEDYARKVCKQFTEAGLMADVDLDSGCLLNRK 760

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A L  +   ++VG K    + V ++ R   +  ++   EV+
Sbjct: 761 IRNAQLAQYNFILVVGEKEKMTNSVNVRTRDNKVHGELPAAEVL 804


>gi|210616985|ref|ZP_03291320.1| hypothetical protein CLONEX_03542 [Clostridium nexile DSM 1787]
 gi|210149508|gb|EEA80517.1| hypothetical protein CLONEX_03542 [Clostridium nexile DSM 1787]
          Length = 480

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           P+ +     NEK F    +   V A     + ++     +FG  +    +  +   + + 
Sbjct: 197 PFVSGRKAENEK-FAGAQDTYTVEALMHDGKALQSATSHFFGNGFPDAFNIKYIDKNNQP 255

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H V   S+G+ + R++ A+I    D  G++ P  +AP +  +I I  H +   +  +++ 
Sbjct: 256 HSVYETSWGL-STRIIGAIIMVHGDDDGLVLPPRIAPVQTRVIPIAQHKEGVLEKADELL 314

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L   G     DD  +  G +F+  ++LG P ++ +G K +  ++V +  R T  +  +
Sbjct: 315 AALKAAGYRAKIDDSEKSPGWKFSEQEILGIPTRIEIGPKDIEKNQVVVVRRDTREKIVV 374

Query: 430 SLEEV 434
           S++E+
Sbjct: 375 SIDEI 379



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG  ++LP G    +N+   +      TG   +S+P L    L  + G + + +  E+  
Sbjct: 38  KGCLNYLPNGYAIWENIQRDLDARFKETGVENVSLPMLIPESLLEKEGDHIEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +     +R  + +   PT E +  D++   ++S+R+LP  + Q    L++    RP    
Sbjct: 98  VTHGGMERLQERLCIRPTSETLFCDLWSKMVRSHRDLPKVWNQWNSVLRWEKTTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +RSREFL ++ ++   T E ++     M   Y
Sbjct: 155 LRSREFLWQEGHTIHATYEEAEQRTLTMLKVY 186


>gi|160936998|ref|ZP_02084362.1| hypothetical protein CLOBOL_01887 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440188|gb|EDP17935.1| hypothetical protein CLOBOL_01887 [Clostridium bolteae ATCC
           BAA-613]
          Length = 636

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 151/402 (37%), Gaps = 51/402 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  +   G   +LP G    + +    RE   R G  E+S P + S  LW  SG +D Y 
Sbjct: 255 MFAEEGPGFPFFLPKGMTLKNTLIDYWREIHYRDGYQEVSTPIILSRKLWENSGHWDHYK 314

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +      ++++   SYR+LP    ++ L  R E   +  G
Sbjct: 315 DNMYTTVIDEEDYAV--KPMNCPGGMLVYKNQPHSYRDLPLKVGELGLVHRHEKSGQLHG 372

Query: 149 VMRSREFLMKDAYSF--DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +MR R F   DA+ F  D   E       K+       F       +  R E   +G D 
Sbjct: 373 LMRVRCFTQDDAHIFMRDDQIEDQIKGVTKLINEVYTQFGFEYFVELSTRPEDS-MGSDE 431

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E   +A  G  +              E+   D I++     E   A Y    D H   
Sbjct: 432 DWE---MATNGLRKAL------------EDMGLDYIVN-----EGDGAFYGPKIDFH--- 468

Query: 267 LFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
           L DSL        R  + G I   F    ++ L  +A     DG K   + +     G++
Sbjct: 469 LRDSL-------GRTWQCGTIQLDFQMPQRFDLEYTAE----DGSKKRPIMIHRVCFGSI 517

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++     GK  +W   +AP ++ +I +    +   D    +Y +L   G     D
Sbjct: 518 ERFIGILIEHFAGKFPVW---LAPVQVKVIPV---SEKSMDYATGVYEKLKAAGIRTELD 571

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              E++G +   A L   P  +++G K  ++  + ++ R  G
Sbjct: 572 HKDEKVGYKIRQAQLEKVPYMLVLGEKEAAEGAITVRSRDKG 613


>gi|163940157|ref|YP_001645041.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163862354|gb|ABY43413.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 639

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE QN     E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQNEYNYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ + K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDHKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|332306910|ref|YP_004434761.1| threonyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174239|gb|AEE23493.1| threonyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 638

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/419 (20%), Positives = 155/419 (36%), Gaps = 44/419 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +R +       E+  P +    LW +SG +D Y + 
Sbjct: 257 QEEAPGMVFWHNDGWSIYTELEKFVRSKLREYEYQEVKAPLMMDRSLWEKSGHWDKYAEN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M        +  +  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTTSEKREYAV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  T +           S   I+   G ++I ++  + P     S E  
Sbjct: 376 VRGFTQDDAHIF-CTEDQILAEVGGCIDSVYEIYKIFGFENISVKLSTRPEKRVGSDEVW 434

Query: 212 VLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             A+    +   SK  +DF  +P E   +   I                       L D 
Sbjct: 435 DKAEKELAEALTSKG-IDFQYLPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +S+P  + +T+   DG+     M    I G++     
Sbjct: 474 LD-------RAWQCGTV---QLDFSMPGRLGSTYVAEDGERKVPVMIHRAILGSLERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G   +W   +AP +  ++NI  +     +  +K+  +L ++G     D   E+
Sbjct: 524 ILIEEYSGFFPLW---LAPTQAVVMNITDNQS---EYAQKVVKKLKEIGIRAKSDLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           IG +     L   P  ++VG K +   ++ ++ R       MS++  I  A  +  + +
Sbjct: 578 IGFKIREHTLRRVPYLLVVGDKEIEAGEIAVRSRKGDDLGKMSVDAFIELACEQIKSKQ 636


>gi|260591627|ref|ZP_05857085.1| threonine--tRNA ligase [Prevotella veroralis F0319]
 gi|260536427|gb|EEX19044.1| threonine--tRNA ligase [Prevotella veroralis F0319]
          Length = 649

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 147/416 (35%), Gaps = 65/416 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +   +L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQELLRRLLRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDAFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVYAYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+  K  +       L++F   G  +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPDQVKAEFETNIDIILKVFATFGFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W    AA      EK   +  E
Sbjct: 428 RDPNDKEKYIGSD-----------------------EVWEESEAAIKAACEEKGLKARVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 LGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNTKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D   K+ A       
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYARKVKAYFDAHDV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DD  E+IG +    +L   P  VIVG K  +   V ++ +  G +  M++EE
Sbjct: 577 RSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAQGLVSMRQQGGGEQATMTMEE 632


>gi|16764684|ref|NP_460299.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991842|ref|ZP_02572941.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168244449|ref|ZP_02669381.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448321|ref|YP_002045340.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197262906|ref|ZP_03162980.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|22654123|sp|Q8ZPS9|SYT_SALTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690646|sp|B4TGH1|SYT_SALHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16419852|gb|AAL20258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194406625|gb|ACF66844.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197241161|gb|EDY23781.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329759|gb|EDZ16523.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336802|gb|EDZ23566.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261246542|emb|CBG24352.1| ThrRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993213|gb|ACY88098.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157870|emb|CBW17364.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912318|dbj|BAJ36292.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223961|gb|EFX49024.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129604|gb|ADX17034.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988221|gb|AEF07204.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|84687895|ref|ZP_01015762.1| threonyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664089|gb|EAQ10586.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 649

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 153/422 (36%), Gaps = 56/422 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q R G +E++ P +    LW  SG ++ Y +
Sbjct: 261 MQEEAPGQVFWHPNGWTIYTVLQDYMRRQQQRGGYVEVNTPQVVDRKLWEASGHWEKYQE 320

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 321 NMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNVGLKSYRDLPLRMAEFGSCNRYEPSGA 380

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   DA+ F    E    S  + F+S+L  I+  LG  +  ++    P   
Sbjct: 381 LHGIMRVRGFTQDDAHIF--CTEDQIESETERFISFLAGIYKDLGFPTYKIKFSDRP--- 435

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                    A + E      K  +D                        A +  T+DV  
Sbjct: 436 ------DTRAGSDEIWDKAEKALLD------------------------ATHKVTNDVEL 465

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
                +    K        +G  +  GT    + LP  + A + G DG  H  V +    
Sbjct: 466 NPGEGAFYGPKLEFVLTDAIGRDWQCGTLQVDFVLPERLDANYIGEDGAKHRPVMLHRAT 525

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGC 377
           +G+      ++   H GK   W   +AP ++ + +I +  D   R+  + + A+    G 
Sbjct: 526 LGSFERFIGILIEEHAGKLPFW---IAPRQVVVASIVSDADDYVREVVDALRAK----GV 578

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D   E+I  +         P+ + +G K V D  V ++         ++L+EV+  
Sbjct: 579 RAEADTRNEKINYKVREHSAGKVPVILAIGMKEVEDRTVTLRRLGEKQTRVVALDEVVQE 638

Query: 438 AS 439
            S
Sbjct: 639 LS 640


>gi|297564570|ref|YP_003683542.1| prolyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849019|gb|ADH62034.1| prolyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 477

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 5/149 (3%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           YFG K+S      F+  D +  Y    S+G  + R + A++ +  D KG+I P  +AP +
Sbjct: 231 YFGQKFSRAFEIKFQDKDLQTKYAYTTSWGF-STRAIGAIVMTHGDDKGLILPPKLAPIQ 289

Query: 349 ISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
           + ++ I   D   +   A E +   L   G  V  DD  +   G +F   +L G P ++ 
Sbjct: 290 VVVVPIYKEDTRAKVLAAAEGLAQALKAAGIRVHLDDRDQYSPGFKFNEWELKGVPFRLE 349

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G + V      +  RL G +E + +EE+
Sbjct: 350 LGPRDVDAQTAVLASRLGG-KETVPMEEI 377



 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++  ++ S IKSYR+LP    Q     R ELR +   +R+ EFL ++ ++   T 
Sbjct: 110 PTSETIIGHMWASWIKSYRDLPQLLNQWNSVVRWELRTKL-FLRTSEFLWQEGHTAHATQ 168

Query: 168 EGSKHSYNKMFVSYLRIF 185
           E ++    +M   Y  + 
Sbjct: 169 EEAEEETRRMLDIYATVL 186


>gi|163801061|ref|ZP_02194961.1| threonyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159175410|gb|EDP60207.1| threonyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +R + +  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFVRSKLDEYGYQEVKGPLIMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   A  N +     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTASEN-REYALKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +             +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTESQIQEEVTSCIKMVYDTYQTFGFDNIVVKLSTRPEQRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + M+ P                I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQSLESMEIPY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  L+NI        D  +++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAILMNITDKQS---DYVQEVVQKLQKSGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTR 612


>gi|298530062|ref|ZP_07017464.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509436|gb|EFI33340.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 646

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 161/388 (41%), Gaps = 53/388 (13%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           R+E  R G   +  P +   +LW +SG YD+Y +E +     +++     P +      I
Sbjct: 282 RKEHLRRGYQIVQGPQILRRELWEKSGHYDNY-RENMYFTHIDEQVYGVKPMNCLSHMLI 340

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++S ++SYR+LP  ++++    R E      G++R REF   DA+     P+  +     
Sbjct: 341 YKSKLRSYRDLPLRYFELGRVHRHEKSGVLHGLLRVREFTQDDAHIL-CRPDQLQDEITG 399

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           + V+++R                  + G    E++V   T   +   S +  +    +  
Sbjct: 400 V-VNFVR-----------------DVMGLFGFEYVVEVSTRPEKHIGSSEAWEKSTRALT 441

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           +  D +     I     A Y    D+   KL D+L    + +     V   F    ++ L
Sbjct: 442 SALDALDMPYEINPGDGAFYGPKIDI---KLKDALDRKWQCAT----VQCDFTLPERFDL 494

Query: 297 PMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               T+ G DG+ +  V +    +GA+ R +  +IE      G  +P  +AP +  ++NI
Sbjct: 495 ----TYTGEDGRKYRPVMLHRVVLGAIERFLGVLIEHY----GGAFPTWLAPVQARIMNI 546

Query: 355 K------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                   HD  C D       R  ++G  V  DD  E++G +   A +   P  ++ G 
Sbjct: 547 TDAQAGYVHD--CAD-------RFRQMGIRVEVDDRNEKLGYKVREAQMEKIPYVLVAGD 597

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + V +S + ++ R       MS++EV +
Sbjct: 598 QEVQESGLNVRLRGGKNLGLMSIQEVAD 625


>gi|157145208|ref|YP_001452527.1| hypothetical protein CKO_00941 [Citrobacter koseri ATCC BAA-895]
 gi|157082413|gb|ABV12091.1| hypothetical protein CKO_00941 [Citrobacter koseri ATCC BAA-895]
          Length = 652

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 5/193 (2%)

Query: 13  ENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   +AE   H+ + R   + H   ++ G   W P G     ++ A +R      G +E+
Sbjct: 245 EKTAEAEKRDHRKLGRELDLFHFQDNAPGAVFWHPRGWTIFQSLIAYMRSRHEVAGYVEV 304

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           + P +    LW  SG +D+Y   M      + +     P +      +F+  IKSYR+LP
Sbjct: 305 NTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFKYGIKSYRDLP 364

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +     R E      G++R R F   DA+ F  T +  +     +    L I+ + 
Sbjct: 365 VRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTLQQVEGECKSILQLVLDIYKQF 423

Query: 189 GLKSIPMRAESGP 201
           G + + ++  + P
Sbjct: 424 GFEEVAIKLSTRP 436


>gi|172060451|ref|YP_001808103.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|238689138|sp|B1YP13|SYT_BURA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171992968|gb|ACB63887.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 635

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   N  G +E+  P +    LW  SG + +Y +
Sbjct: 255 MQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 371 GLMRVRGFVQDDAHIF 386


>gi|203288149|ref|YP_002223164.1| threonyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|238690577|sp|B5RQ59|SYT_BORRA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|201085369|gb|ACH94943.1| threonyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 583

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/415 (20%), Positives = 164/415 (39%), Gaps = 48/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G +    +    REE  + G   +  P +  + LW  SG  D Y + M    
Sbjct: 205 GLIFFHPHGARIRALIENFWREEHFKNGYDILFTPHIGKSWLWETSGHLDFYKESMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G MR R F 
Sbjct: 265 EMDRSDYYVKPMNCPFHIAIYNTDKHSYRDLPFRWAELGTVYRYEKIGAIHGTMRVRGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T E       ++    + ++++ G  ++     + P   +G D   +  V 
Sbjct: 325 QDDAHII-CTYEQVNFEVREVLRFAIDMWNKFGFTNLKAYLSTKPEKAVGDDDDWQMAVK 383

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                      K  +DF     N DFD       I E   A Y    D+   K+ DSL  
Sbjct: 384 V--------LEKALIDF-----NIDFD-------IDEGGGAFYGPKIDL---KIIDSL-- 418

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
                 R  ++  I +    ++LP+    T+   DGK+    M     +G++     ++ 
Sbjct: 419 -----GRAWQMTTIQF---DFNLPVRFKMTYTAEDGKEKRPFMIHRALLGSIERFFGILV 470

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIG 389
             + G   +W   +AP ++ +I +   + +  +   ++ +R    G  + +D+    ++ 
Sbjct: 471 EHYGGAFPVW---LAPLQVVIIPV---NSIVEEYALEVLSRFQNEGIRIKFDNYYNMRMN 524

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++         P   I+G + V + K+ I+ R       + L+E + +   + SN
Sbjct: 525 AKIRQYQSKKVPYMFIIGEREVVEGKISIRTRTNEQINGLELKEALEFVKLKISN 579


>gi|168233251|ref|ZP_02658309.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472380|ref|ZP_03078364.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458744|gb|EDX47583.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205332671|gb|EDZ19435.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|170755400|ref|YP_001782969.1| prolyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|259511587|sp|B1IFI2|SYP_CLOBK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169120612|gb|ACA44448.1| prolyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 478

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/358 (19%), Positives = 142/358 (39%), Gaps = 79/358 (22%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G  D        LA+R    +   PT E +  + +   ++SY++LP  + Q    +
Sbjct: 97  WVTHGGDDE-------LAER----LCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVV 145

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMR 196
           ++    RP    +R+ EFL ++ ++   T E ++ HS     +  L ++ RL    + M 
Sbjct: 146 RWEKTTRP---FLRTTEFLWQEGHTIHETKEEAESHS-----LKILNMYSRLCEDMLAMP 197

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                         +V+    + + F   D              D  ++ S++       
Sbjct: 198 --------------VVMGKKTDKEKFAGAD--------------DTYTIESLMH------ 223

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                                  + ++ G   Y G  +S   +  F   +GK  Y    +
Sbjct: 224 ---------------------DGKALQAGTSHYLGQNFSKAFAIQFSDRNGKLDYPHYTT 262

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + +   R++ A+I    D  G+  P  +AP +  +I +  H +   +  E++  RL+KV 
Sbjct: 263 WAV-TTRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAEELKERLAKV- 320

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             V  DD  +  G +++  ++ G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 321 VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEI 378


>gi|29829188|ref|NP_823822.1| prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|81838431|sp|Q82JV8|SYP2_STRAW RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|29606294|dbj|BAC70357.1| putative prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 471

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/439 (19%), Positives = 172/439 (39%), Gaps = 82/439 (18%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P   + PR        AE+A +  +  T +I  +  G++      ++    +
Sbjct: 1   MAKAPVLTPRADDFPRWYQDLINKAELADNGPVRGTMVIRPYGYGLW------ERMQQEM 54

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPT 109
           +A I+E   +     + +P    + L  E+   + +  E+  +     K +    +  PT
Sbjct: 55  DARIKETGTQNAYFPLLIP---QSYLTKEADHVEGFAPELAVVTHGGGKELEEPAVVRPT 111

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
            E ++ D F   ++SYR+LP    Q     R ELRPR   +R+ EFL ++ ++   T E 
Sbjct: 112 SEMIINDYFSKWVQSYRDLPLLINQWANVVRWELRPRL-FLRTTEFLWQEGHTAHATYEE 170

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           ++      F +++   HR                                 V+   DFM 
Sbjct: 171 ARD-----FAAHI---HR--------------------------------HVYA--DFM- 187

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                     +++++++ ++ + TA       V+   L   + + K      +++G    
Sbjct: 188 ----------ENVLAMDVVLGRKTAKERFAGAVNTLTLEGMMGDGK-----ALQMGTSHE 232

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++      +   +GK   V   S+G    R++ A++    D  G+  P  +A  ++
Sbjct: 233 LGQNFARAFHTQYLSKEGKQELVWQTSWG-STTRMIGALVMMHGDDNGLRVPPRLAQTQV 291

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGS 408
            ++ IK  D+       +   RL   G  V  DD  +   G +    +L G P++V VG 
Sbjct: 292 VVLAIKG-DEAVLAKVRETGDRLKAAGLRVQVDDRTDVPFGRRAVDWELKGVPVRVEVGP 350

Query: 409 KFVSDSKVEIKHRLTGIRE 427
           + + +    +  R+ G +E
Sbjct: 351 RDLENGTAMVARRIPGGKE 369


>gi|47221603|emb|CAF97868.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 604

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 2/166 (1%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK  L ++++    + I  ++        +  S G   +LP G    + +   I+ E  R
Sbjct: 142 SKLRLQLIEDQTSGSSITVYRHDQELFFFNDVSPGSCFFLPKGAHIYNTLTDFIKGEYRR 201

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PTL S  LW  SG ++ Y   M  +           P +      +F   ++
Sbjct: 202 RGFTEVVTPTLYSTALWERSGHWEHYSDNMFTVTSEGSHTYALKPMNCPAHCLMFEQRVR 261

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           S++ LP  +       R+EL     G+ R R F   DA+ F   PE
Sbjct: 262 SWKELPLRWADFGALHRNELSGALGGLTRVRRFCQDDAHIF-CAPE 306


>gi|225028654|ref|ZP_03717846.1| hypothetical protein EUBHAL_02933 [Eubacterium hallii DSM 3353]
 gi|224954040|gb|EEG35249.1| hypothetical protein EUBHAL_02933 [Eubacterium hallii DSM 3353]
          Length = 591

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 164/422 (38%), Gaps = 46/422 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L T  I +   G   +LP G    + +    R+   R
Sbjct: 182 KDYLNMLEEAKKRDHRKLGKELGLFT--IMEEGPGFPFFLPKGMILKNTLIDYWRKMHTR 239

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+S P L +  LW  SG +D Y +E +     +D      P +      +++   +
Sbjct: 240 EGYEEISTPILLNRQLWETSGHWDHY-RENMYTTVIDDMDFAVKPMNCPGGMLVYKMEPR 298

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP    ++ L  R E   +  G+MR R F   DA+ F +T    ++   K+     
Sbjct: 299 SYKELPLRLGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTEAQIENEIQKVVKLID 357

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G       +           E+ V  +  E  +          IP E  + D  
Sbjct: 358 EVYKKFGFTYHVELSTRPADSMGTEEEWEVATNALENAIKAMN------IPYEVNEGDG- 410

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
                      A Y    D H   L DS+        R  + G I      + LP    A
Sbjct: 411 -----------AFYGPKLDFH---LQDSI-------GRTWQCGTI---QLDFQLPQRFEA 446

Query: 301 TFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+ H  + +     G++     ++   + GK   +P  +AP +  ++ +   D+
Sbjct: 447 EYIGADGEKHRPIMIHRVVFGSIERFIGILIEHYAGK---FPTWLAPVQAKVLPVS--DK 501

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L   G  V  DD  E++G +   A L   P  +I+G K  S   V ++
Sbjct: 502 FA-DYAKQVAEALKASGVRVEVDDRDEKLGYKIRQAQLQKVPYMLILGEKEQSAGTVSVR 560

Query: 420 HR 421
            R
Sbjct: 561 KR 562


>gi|300716458|ref|YP_003741261.1| Threonyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299062294|emb|CAX59411.1| Threonyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/439 (20%), Positives = 160/439 (36%), Gaps = 50/439 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L + +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 230 AAYLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLTE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +++Y + M   +  N +  I  P +      IF   +K
Sbjct: 288 YDYQEVKGPLMMDRVLWEKTGHWENYKEAMFTTSSENREYCI-KPMNCPGHVQIFNQGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N       
Sbjct: 347 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRTEVNSCIRMVY 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDF 239
            ++   G + I ++  + P+    + E     D  E  +  +    D P    P E   +
Sbjct: 406 DMYSTFGFEKIVVKLSTRPVKRIGTEE---QWDRAEADLAAALKENDIPFEYQPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                       L D L        R  + G +      +SLP  
Sbjct: 463 GPKIEFT--------------------LHDCLD-------RAWQCGTV---QLDFSLPSR 492

Query: 298 MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           +SA++ G + +     M    I G++     ++   + G    +P  +AP ++ ++NI  
Sbjct: 493 LSASYIGENNERQVPVMIHRAILGSVERFIGILTEEYAG---FFPTWLAPVQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +   ++  +L   G     D   E+IG +     L   P  ++ G K V   KV
Sbjct: 550 GQS---EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKV 606

Query: 417 EIKHRLTGIREDMSLEEVI 435
            ++ R       M + EVI
Sbjct: 607 AVRTRRGKDLGSMDVNEVI 625


>gi|216264494|ref|ZP_03436486.1| threonyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215980967|gb|EEC21774.1| threonyl-tRNA synthetase [Borrelia burgdorferi 156a]
          Length = 581

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 159/409 (38%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE--FI 211
             DA+    T         ++    + ++ + G  ++     + P   +G D   E    
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFSNLKAYLSTKPDKSVGNDSDWEMSLK 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL +T            DF +P E            I +   A Y    D+   K+ DSL
Sbjct: 384 VLEET----------LSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSL 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAV 328
               ++S    +          ++LP   + T+   DGK+    M     +G++     +
Sbjct: 419 EREWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P ++ +I +   + +  D   K++ +    G  +  D+   ++
Sbjct: 469 LVEHYGGAFPLW---LSPVQVVIIPV---NNIVEDYAIKVFNKFKNEGIRIKLDNSSSRM 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++         P   I+G +  ++ ++ I+ R       M L+E + +
Sbjct: 523 NAKIREYQAKKIPYMFIIGEREATEERISIRTRTNEQINGMKLDEALKF 571


>gi|219666254|ref|YP_002456689.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536514|gb|ACL18253.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 639

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 152/396 (38%), Gaps = 51/396 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H    G   + P G    + +    R+E  + G  E+  P + S +LW  SG +D Y K
Sbjct: 256 LHDEGPGFPFFHPKGMVLRNQLEDFWRQEHRKRGYHEIKTPIILSRNLWENSGHWDHY-K 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           + +     +D+     P +      +++  ++SYR+LP    ++ L  R EL     G++
Sbjct: 315 DNMYTTKIDDEDFAVKPMNCPGGMIMYKQKLRSYRDLPLRMGELGLVHRHELSGALNGLL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F + P   K   + +     R +   G +    +  R E+  +G D +
Sbjct: 375 RVRNFTQDDAHIF-MLPSQIKAEISGVIDLVDRFYKVFGFEYHVELSTRPENS-MGADET 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      T   Q       +++ I   +  F                Y    D H   L
Sbjct: 433 WEMA----TNALQEALEAKGVNYKINPGDGAF----------------YGPKIDFH---L 469

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            D L        R  + G I   F    K+ L    T+ G DG+ H  V +     G++ 
Sbjct: 470 RDCL-------GRTWQCGTIQLDFQMPEKFDL----TYIGEDGQKHRPVMIHRVVYGSIE 518

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A++   + G    +P  +AP ++ ++ I    +   D  + I  RL+ +      D+
Sbjct: 519 RFIALLTEHYAGA---FPTWLAPVQVRVLPISERHE---DYAQDIVRRLNDLDIRAEVDE 572

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             E+I  +   A     P  ++VG +      V ++
Sbjct: 573 RREKISYKIREAQTHKIPFALVVGDQEAETDTVAVR 608


>gi|261349933|ref|ZP_05975350.1| threonine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|288860716|gb|EFC93014.1| threonine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 608

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 161/426 (37%), Gaps = 88/426 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP----------TLQSADLWVESGRYD 87
           G   W P G+   D +   +       GA+ +  P           + +A       R D
Sbjct: 215 GNLKWFPKGRLVRDLLADYVYNLVVDQGAMPIETPIFYDLDNEAINVHAAKFGERQYRTD 274

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPR 146
           +    MLR A        +G     VM D F +    ++NLP   Y++    FR E +  
Sbjct: 275 TKKNLMLRFA------CCFGAFR--VMADPFIT----WKNLPAKLYELSTYSFRFEKKGE 322

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F M D +SF      +   ++K                  M  ++G +  D
Sbjct: 323 VVGLKRLRAFTMPDFHSFCADMNSTLEEFSK---------------QTDMCIQTG-VDLD 366

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +++E I  A         +KDF D     EN             ++W   Y+    +   
Sbjct: 367 VNYEIIFRA---------TKDFYD-----EN-------------KEWM--YSIGKKIGKP 397

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-----------MSATFKGADGKDHY-VQ 313
            L + LPE K   +  I+   I Y G     P              T+ G DGK+HY   
Sbjct: 398 VLLEILPERKHYWSCKIDFAAIDYLGRPIENPTVQIDVESGKRFDITYLGEDGKEHYPTI 457

Query: 314 MGSYGIGAM-RVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +     G++ RV+ +++E +    D K  + P  ++P ++ +I +   D   +D   ++Y
Sbjct: 458 LHCSPTGSIERVICSLLEKTAIELDEKAPMLPTWLSPIEVRIITV-GEDH--KDFANELY 514

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +++     V  DD  E +G +   A     P   +VG          +  R TG + DM
Sbjct: 515 DKINAENIRVDVDDRDESVGKKIRNAATEWIPYIFVVGDNEKESGVFSVTVRETGEKVDM 574

Query: 430 SLEEVI 435
           +++E+I
Sbjct: 575 TVDELI 580


>gi|204636657|gb|ACI01751.1| putative threonyl-tRNA synthetase [Escherichia coli]
          Length = 652

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 5/193 (2%)

Query: 13  ENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   +AE   H+ + R   + H   ++ G   W P G     ++ A +R      G +E+
Sbjct: 245 EKTAEAEKRDHRKLGRELDLFHFQDNAPGAVFWHPRGWTIFQSLIAYMRSRHEVAGYVEV 304

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           + P +    LW  SG +D+Y   M      + +     P +      +F+  IKSYR+LP
Sbjct: 305 NTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFKYGIKSYRDLP 364

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +     R E      G++R R F   DA+ F  T +  +     +    L I+ + 
Sbjct: 365 VRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTLQQVEGECKSILQLVLDIYKQF 423

Query: 189 GLKSIPMRAESGP 201
           G + + ++  + P
Sbjct: 424 GFEEVAIKLSTRP 436


>gi|153938581|ref|YP_001392690.1| prolyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|171769234|sp|A7GIT0|SYP_CLOBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152934477|gb|ABS39975.1| proline--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320672|gb|ADG01050.1| proline--tRNA ligase [Clostridium botulinum F str. 230613]
 gi|322807661|emb|CBZ05236.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 478

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/358 (19%), Positives = 142/358 (39%), Gaps = 79/358 (22%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G  D        LA+R    +   PT E +  + +   ++SY++LP  + Q    +
Sbjct: 97  WVTHGGDDE-------LAER----LCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVV 145

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMR 196
           ++    RP    +R+ EFL ++ ++   T E ++ HS     +  L ++ RL    + M 
Sbjct: 146 RWEKTTRP---FLRTTEFLWQEGHTIHETKEEAESHS-----LKILNMYSRLCEDMLAMP 197

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                         +V+    + + F   D              D  ++ S++       
Sbjct: 198 --------------VVMGKKTDKEKFAGAD--------------DTYTIESLMH------ 223

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                                  + ++ G   Y G  +S   +  F   +GK  Y    +
Sbjct: 224 ---------------------DGKALQAGTSHYLGQNFSKAFAIQFSDRNGKLDYPHYTT 262

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + +   R++ A+I    D  G+  P  +AP +  +I +  H +   +  E++  RL+KV 
Sbjct: 263 WAV-TTRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAEELKERLAKV- 320

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             V  DD  +  G +++  ++ G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 321 VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEI 378


>gi|262275836|ref|ZP_06053645.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262219644|gb|EEY70960.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      + A +R +       E+  P +    LW  SG +D Y  
Sbjct: 256 MQQEAPGMVFWHHNGWVVFRELEAFVRSKLAEYNYQEVKGPLIMDRVLWERSGHWDKYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 YMFTTQSEN-REYALKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  TPE  +             +   G + I ++  + P   +G D  
Sbjct: 375 RVRGFTQDDAHIF-CTPEQVQQEVTSCIKMVYDTYKTFGFEDIVVKLSTRPEMRVGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  +       + S N  F+       I+E   A Y    +     L
Sbjct: 432 ----AMWDRAEKALAEA-------LESMNIQFE-------ILEGEGAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI  +     +  +++  +L K G     D  
Sbjct: 521 FIGILIEEYAGH---FPSWLAPQQAVVMNITDNQA---EYVQEVAKKLQKAGFRASADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 575 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 611


>gi|254995424|ref|ZP_05277614.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str.
           Mississippi]
          Length = 636

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 9/199 (4%)

Query: 14  NPRDAEIASHKLMLR-TGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +  G  H  ++  G   W   G      +   IR +  + G  E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIRCKLKKHGYHEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + D + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E     +G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGP---IGGD 205
             S+ ++    P   IG D
Sbjct: 414 FDSVTVKLSDRPENRIGSD 432


>gi|328957059|ref|YP_004374445.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673383|gb|AEB29429.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 645

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 167/420 (39%), Gaps = 52/420 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + +   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDREISLGYQHVYTPIMADVNLYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ + SYR LP    ++    R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDVHSYRELPIRIAELGQMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D ++F + P+  +  + +     L ++    +     R +   P   +  ++   + 
Sbjct: 382 TLNDGHTF-VRPDQIEEEFKRTLELMLAVYGDFNITDYRFRLSYRDPNNTEKYYDDDGMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  +T +  + D M+        D+ +        E   A Y    DV  +         
Sbjct: 441 EKAQTMLKAAMDDMEL-------DYFE-------AEGEAAFYGPKLDVLVK--------- 477

Query: 275 KRVSARGIE-----VGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAM-RVVA 326
              +A GIE     +   F    ++ L    T+ G DG++++  V +    +  M R VA
Sbjct: 478 ---TAIGIEETLSTIQLDFLLPERFDL----TYVGEDGENNHRPVVIHRGIVSTMERFVA 530

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            +IE     KG  +P  +AP + ++I  N+  H     D   +I  +L  +G  V  D+ 
Sbjct: 531 YLIEEY---KG-AFPTWLAPVQATIIPVNLDMH----TDYAYEIKKQLESIGMRVDVDER 582

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E++G +   +     P Q++VG   V D+ V ++       E + L + I   S    N
Sbjct: 583 NEKMGYKIRASQTQKIPYQLVVGDSEVQDNTVAVRKYGEKATETIGLNDYIEKVSSEIKN 642


>gi|323702723|ref|ZP_08114384.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532386|gb|EGB22264.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 155/420 (36%), Gaps = 47/420 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I     G   + P G    + +    R E  + G  E+  P + +  LW +SG +  Y K
Sbjct: 255 IQDEGPGFPFFHPKGMVLRNELENFWRREHKKRGYQEIRTPIILNRSLWEQSGHWAHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D      P +      ++++ + SYR+LP    ++ L  R EL     G+M
Sbjct: 314 ENMYFTKIDDADYAVKPMNCPGSILVYKTRMHSYRDLPLRLAELGLVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F + P   K     +   +   +   GL S  +   + P     S E 
Sbjct: 374 RVRCFTQDDAHIF-MLPSQIKDEIIGVIDLFEYFYKTFGL-SYHVELSTRPEKSMGSDEI 431

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             LA         +K+ M + +   +  F                Y    D H   L DS
Sbjct: 432 WELATRSLQDALEAKN-MPYKVNEGDGAF----------------YGPKIDFH---LTDS 471

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
           L        R  + G I   F    K+ L    T+ G DG+ H  V +     G++    
Sbjct: 472 L-------GRTWQCGTIQLDFQMPEKFDL----TYVGEDGQKHRPVMIHRVVFGSIERFI 520

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            ++     G   +W   +AP ++ ++ I   H    R+  +K+ A   +V  D       
Sbjct: 521 GILTEHFAGAFPVW---LAPVQVKVLPITDKHHDYARELVQKLDAMDIRVELDA----RN 573

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+I  +   A     P  +++G + + +  V ++ R  G    + ++E I        N 
Sbjct: 574 EKINYKIREAQTQKIPYMLVIGDREMENGTVAVRQRGKGDIGAVKMDEFIAKIEDEIKNK 633


>gi|172087694|ref|YP_204597.2| threonyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197335357|ref|YP_002156016.1| threonyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|171902287|gb|AAW85709.2| threonyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197316847|gb|ACH66294.1| threonyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 642

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 152/397 (38%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   +RE+  +    E+  P +    LW  SG +D Y +
Sbjct: 256 MQQEAPGMVFWHHNGWTIFRELEVFVREKLTQYDYQEVKGPLMMDRVLWERSGHWDKYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   + + + Y   +   G  +I ++  + P   +G D  
Sbjct: 375 RVRGFTQDDAHVFCTEAQVQQEVKSCIEMVY-DTYQTFGFDNIVVKLSTRPEQRVGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E+ +  + + M+ P                I E   A Y    +     L
Sbjct: 432 ----EMWDRAESDLKLALESMEIPY--------------EIQEGEGAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++ I        D  ++I  +L K G  V  D  
Sbjct: 521 FIGILIEDYAG---FFPTWLAPEQAIVMGITDKQA---DYVQEIAKKLQKNGFRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 575 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 611


>gi|297588366|ref|ZP_06947009.1| threonine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573739|gb|EFH92460.1| threonine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 634

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 160/425 (37%), Gaps = 55/425 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   + P G   L+ +   ++E+    G  ++  P + + DLW +SG +D Y +
Sbjct: 255 IQEEGPGFPFFHPNGMVVLNELEKFLKEQLLDRGYGQIKTPLILNEDLWHQSGHWDHYKE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D +D A+   P +      +++  + SYR LP    ++    R EL     G+
Sbjct: 315 NMYFTQIDGDDYAI--KPMNCPGSILVYKDELHSYRELPIKVAELGQVHRHELSGALHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            R R F+  DA+ F L PE  +    K+  F  Y  I+ + G K                
Sbjct: 373 FRVRTFVQDDAHVFCL-PEQIEEEVTKIIDFCDY--IYSKFGFK---------------- 413

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             + V   T       S +  D  I S  +  +       I E   A Y    D H E  
Sbjct: 414 --YEVELSTRPEDSMGSDEDWDLAINSLKSALEHKGLEYKINEGDGAFYGPKIDFHLEDA 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
                           +G  +  GT    + +P     T+  +DG      M    I G+
Sbjct: 472 ----------------IGRTWQCGTIQLDFQMPERFDMTYIASDGSKKRPAMIHRAILGS 515

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + GK  +W   ++P ++ ++ I        D   ++  ++   G  V  
Sbjct: 516 EERFMGILIEHYAGKFPLW---LSPIQVEILPISDK---FNDYAYELQQKMKARGLRVKV 569

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+IG +   + L      +I+G   + +++V ++ R  G     + +E I+     
Sbjct: 570 DDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRKRDLGDVGSKNTDEFIDELVDE 629

Query: 442 FSNNR 446
           + N +
Sbjct: 630 YQNRK 634


>gi|298694953|gb|ADI98175.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323440773|gb|EGA98482.1| threonyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442928|gb|EGB00551.1| threonyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 645

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/404 (20%), Positives = 168/404 (41%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ ++M+  P +      I+ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  + ++    + ++   G +    R         LS+      D
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR---------LSYR-----D 426

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + +   D  D    +EN   +    L    E+     A      + ++  ++ + +
Sbjct: 427 PEDKEKYFDDD--DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEE 484

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSH 333
            +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA + E + 
Sbjct: 485 TLSTAQLD----FLLPERFDL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET- 535

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             KG  +P  +AP ++ +I  N+  H     D   ++   L   G  V  D+  E++G +
Sbjct: 536 --KG-AFPTWLAPKQVQIIPVNVDLH----YDYARQLQDELKSQGVRVSIDERNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632


>gi|89892986|ref|YP_516473.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense Y51]
 gi|89332434|dbj|BAE82029.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 641

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 152/396 (38%), Gaps = 51/396 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H    G   + P G    + +    R+E  + G  E+  P + S +LW  SG +D Y K
Sbjct: 258 LHDEGPGFPFFHPKGMVLRNQLEDFWRQEHRKRGYHEIKTPIILSRNLWENSGHWDHY-K 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           + +     +D+     P +      +++  ++SYR+LP    ++ L  R EL     G++
Sbjct: 317 DNMYTTKIDDEDFAVKPMNCPGGMIMYKQKLRSYRDLPLRMGELGLVHRHELSGALNGLL 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F + P   K   + +     R +   G +    +  R E+  +G D +
Sbjct: 377 RVRNFTQDDAHIF-MLPSQIKAEISGVIDLVDRFYKVFGFEYHVELSTRPENS-MGADET 434

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      T   Q       +++ I   +  F                Y    D H   L
Sbjct: 435 WEMA----TNALQEALEAKGVNYKINPGDGAF----------------YGPKIDFH---L 471

Query: 268 FDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMR 323
            D L        R  + G I   F    K+ L    T+ G DG+ H  V +     G++ 
Sbjct: 472 RDCL-------GRTWQCGTIQLDFQMPEKFDL----TYIGEDGQKHRPVMIHRVVYGSIE 520

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A++   + G    +P  +AP ++ ++ I    +   D  + I  RL+ +      D+
Sbjct: 521 RFIALLTEHYAGA---FPTWLAPVQVRVLPISERHE---DYAQDIVRRLNDLDIRAEVDE 574

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             E+I  +   A     P  ++VG +      V ++
Sbjct: 575 RREKISYKIREAQTHKIPFALVVGDQEAETDTVAVR 610


>gi|218245600|ref|YP_002370971.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|257058646|ref|YP_003136534.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|218166078|gb|ACK64815.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|256588812|gb|ACU99698.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 607

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/424 (20%), Positives = 168/424 (39%), Gaps = 56/424 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   ++ EQ + G + +  P +   DL+  SG + +Y ++M  + 
Sbjct: 221 GLPLWTPKGTIIRSTLEDFLKREQLKRGYLSVVTPHIGRVDLFKISGHWQNYKEDMFPMM 280

Query: 98  DRNDK------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             N +           P +      I++S ++SYR LP    +    +R E      G+ 
Sbjct: 281 AENAEEAAQEIGFALKPMNCPFHIQIYKSELRSYRELPIRLAEFGTVYRYEQSGELGGLT 340

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGP-IGG 204
           R R F + D++ F +TP+     +  +    L +F  L LK+   R      ES   IG 
Sbjct: 341 RVRGFTVDDSHLF-VTPDQLDAEFLNVVDLILAVFKSLQLKNFKARLSFRDPESDKYIGS 399

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D + E    A     +   + +   F  P E                  A Y    D   
Sbjct: 400 DEAWE---KAQNAIRRAVQTLEMDYFEAPGE-----------------AAFYGPKLDF-- 437

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             +F  + E      R  ++G +      Y+LP      +   DG +   V +     G+
Sbjct: 438 --IFHDVLE------REWQLGTV---QVDYNLPQRFELEYVAEDGTRQRPVMIHRAPFGS 486

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +  +  ++   + G   +W   ++P +  L+ +     +  D  +++ +++ ++G     
Sbjct: 487 LERLIGILIEEYAGDFPLW---LSPIQARLLPV---SDLQLDYAKEVASKMQQLGIRAEA 540

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  GE++G     A+    P+  ++G+K V  + + I+ R +G    ++ +EVI   +  
Sbjct: 541 DTSGERLGKMVRNAEKQKIPVMGVIGAKEVESNSLSIRTRASGELGTIATDEVIKKLAEA 600

Query: 442 FSNN 445
            +N+
Sbjct: 601 ITNH 604


>gi|56417255|ref|YP_154329.1| threonyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|73919765|sp|Q5P9F6|SYT_ANAMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56388487|gb|AAV87074.1| threonyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 636

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 9/199 (4%)

Query: 14  NPRDAEIASHKLMLR-TGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +  G  H  ++  G   W   G      +   IR +  + G  E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIRCKLKKHGYHEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + D + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E     +G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGP---IGGD 205
             S+ ++    P   IG D
Sbjct: 414 FDSVTVKLSDRPENRIGSD 432


>gi|329569946|gb|EGG51701.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 49

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQK 48
          M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  +
Sbjct: 1  MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANR 48


>gi|227889526|ref|ZP_04007331.1| threonyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227850004|gb|EEJ60090.1| threonyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 643

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 162/405 (40%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I +++   G   +  P L + D +  SG +  Y  +M    
Sbjct: 259 GLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQIREEFAKVLKLIMDVYKDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYYANDEMWERSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH        +K+   L+K G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNEEAHGAY----ADKVREELAKRGFRAEVDHRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + ++ + V ++   T  +   SL+E IN
Sbjct: 586 IRESQTQKVPYTLVLGDEEMNANGVNVRRYGTEEQISKSLDEFIN 630


>gi|315230490|ref|YP_004070926.1| prolyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315183518|gb|ADT83703.1| prolyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 480

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   ++   +  ++  DG   YV   +YG+   R++AAVI    D +G+
Sbjct: 221 GRTLQIGTMHNYKQNFAKAYNIMYEKEDGTHEYVHQTTYGMSE-RLLAAVIAVHGDDRGM 279

Query: 339 IWPDSVAPFKISLINIKAHDQV--CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P ++AP ++ ++ I   D          +I   L   G  V  D+   + G +F   +
Sbjct: 280 VLPPTIAPIQVVIVPIPKKDSPYDVFAYAREIAEELKTAGIRVHVDERDIRPGRKFYDWE 339

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L G PL++ VG + V   K  +  R T
Sbjct: 340 LKGVPLRIEVGPRDVEGQKAVLARRDT 366



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  WLP G + + N+   I EE  RTG  E+  P L    +   E+     +  E+  
Sbjct: 33  KGMNIWLPYGLRIMRNIEKFIHEEMERTGHQEVLFPALIPETEFQKEAEHIAGFEGEVFW 92

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI   +R E +    ++R
Sbjct: 93  VTHAGHDPLDVRLILRPTSETAMYSMFALWIRSHADLPFKIYQIVNVYRYETKHTRPLIR 152

Query: 152 SREF 155
            RE 
Sbjct: 153 VREI 156


>gi|56965736|ref|YP_177470.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56911982|dbj|BAD66509.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 637

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/409 (19%), Positives = 157/409 (38%), Gaps = 42/409 (10%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H+ +   L   M  + + G+  +L  GQ   + + + +R  Q +    E+  P 
Sbjct: 239 EAEKRNHRKLGKELELFMFSEEAPGMPFYLANGQIIRNELESFLRNLQAKYDYKEVRTPI 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG +D Y KE +     +++     P +      IF++ + SYR+LP    
Sbjct: 299 MMNQRLWEQSGHWDHY-KENMYFTQVDEQQFALKPMNCPGHMLIFKNGLHSYRDLPIRMA 357

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK- 191
           +     R E      G++R R F   DA+ F +TP+  +            ++   G K 
Sbjct: 358 EFGQVHRHEFSGALNGLLRVRTFCQDDAHIF-VTPQQIEEEITLALKIIDHVYQVFGFKY 416

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            I +        G  S      A+T    V    ++                    + E 
Sbjct: 417 EIELSTRPDDFMG--SEHLWEQAETALENVLQKLNYA-----------------YKVNEG 457

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D+H   + D++  + + +   ++    F    K+ L         + K   
Sbjct: 458 DGAFYGPKIDIH---IKDAIQRSHQCATVQLD----FQLPEKFDL---TYIDKQNEKKRP 507

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +     G++     ++     G   +W   +AP ++ ++ +     V  D C  I + 
Sbjct: 508 VVIHRAVFGSIDRFLGILIEHFAGAFPVW---LAPVQVQIVPV---SHVHLDYCLTIQSE 561

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           L +VG  V  D+  E++G +   A +   P  +++G   + +  V ++ 
Sbjct: 562 LKQVGVRVNIDESDEKLGYKIRKAQMQKIPCTIVLGDNELKEETVTVRQ 610


>gi|240850680|ref|YP_002972080.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267803|gb|ACS51391.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 658

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 175/450 (38%), Gaps = 51/450 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+   +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGMIFWHKKGWKMFQNLINYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M ++   A+ +D   +Y   P +      
Sbjct: 289 DDHQYAEVNAPQVLDRSLWEISGHWGWYKENMFKVIPVAENSDHGNVYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH--S 173
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    S
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRGFTQDDAHIFCTDEQLADECLS 408

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDF 230
            N + +S    +   G K I ++  + P   +G D       L D  E+        M+ 
Sbjct: 409 INDLILS---TYADFGFKEISLKLSTRPEKRVGSD------ALWDHAES-------IMES 452

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            + +  T F   I   SI+    A Y    +     L D++    +     I+      F
Sbjct: 453 VLKTIETKFAGQIK-TSILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQIDFNLPERF 508

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G  Y             K   V +     G+M     ++  +  G   +W   +AP ++ 
Sbjct: 509 GAFY-------IDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLW---LAPEQVV 558

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  I +      +  +KI A+L  +G     D   E+I  +     L   P+ ++ G + 
Sbjct: 559 VATITSE---ANEYAQKITAKLRAIGLSATIDLRNEKINYKIREHSLQKVPVILVCGKRE 615

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              + V ++   +  +  +S+E+VI   S+
Sbjct: 616 AETNSVNMRRLGSTNKTLLSVEDVIKQLSN 645


>gi|223997660|ref|XP_002288503.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220975611|gb|EED93939.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 592

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 156/414 (37%), Gaps = 44/414 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  +   KL L + +      G+  W P G      +    +E         +  P + 
Sbjct: 178 RDHRVLGKKLDLFS-IQEDAGGGLVFWHPKGSTVRRKIEDFWKEAHIAQDYDIVYTPHIA 236

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + DLW  SG YD Y + M    D  ++     P +      +F+  I+SYR+LPF + ++
Sbjct: 237 NLDLWKTSGHYDFYREGMFDQMDVENEVYQIKPMNCPFHCLMFKDSIRSYRDLPFRWGEL 296

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E      G+MR R F   DA+ F L PE  +     +      I  R G     
Sbjct: 297 GTVYRYERSGTLHGLMRVRGFTQDDAHIFCL-PEQLQSEIVDVLKLTKDILSRFGFNKYE 355

Query: 195 MRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +   + P   +G D   +    A  G                      D++       E 
Sbjct: 356 LMVSTRPEKSVGSDQIWDDATKALVGA--------------------LDELGWEYGTDEG 395

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D+   K+ D++    + S     V   F    ++ L     +  A+GK   
Sbjct: 396 GGAFYGPKIDL---KIKDAIGRTWQCST----VQCDFNLPERFDL----EYVSAEGKKER 444

Query: 312 VQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             M    I G++     ++  +  G    W   +AP ++ L+ +   D V  D C+++  
Sbjct: 445 PIMVHRAIFGSIERFFGILVENTAGDLPFW---LAPTQLKLLPVT--DAVV-DYCKEVAK 498

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + +K+G  V  D   E++  Q   A+    P+  +VG K + +  + ++ R  G
Sbjct: 499 KANKMGLRVEVDRGAERLAKQIRNAEQSRIPVMAVVGMKEMEEGTLALRSRKLG 552


>gi|291287861|ref|YP_003504677.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885021|gb|ADD68721.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 637

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 169/421 (40%), Gaps = 47/421 (11%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +   G   +LP G    + +    ++E  + G
Sbjct: 228 YLNMLEEAEKRDHRKIGKQLKLFT-FSEEAGAGFPIYLPNGGALRNVLETYEKQEHIKRG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P++   DLW +SG YD+Y +E +     +D      P +      +F S I+SY
Sbjct: 287 YDIVYGPSILKQDLWKKSGHYDNY-RENMYFTKIDDVDYGVKPMNCLAHMMVFNSDIRSY 345

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+ F  TPE                
Sbjct: 346 RDLPQRYFELGTVHRHEKSGVLHGLLRVRAFTQDDAHLF-CTPE---------------- 388

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +L  + I +      + G    E+ +   T   +   S D  +    + N  F+ + +
Sbjct: 389 --QLNDEIIGIIDFVDEVMGKFGFEYEIEVSTKPEKYIGSDDNWE---KATNALFEALKT 443

Query: 245 LN---SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   KL D++    + +     +   F    K+ L     
Sbjct: 444 KGLEYEINEGDGAFYGPKIDI---KLKDAIGRYWQCAT----IQADFNLPEKFDL----N 492

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +    +G++     V+     G   +W   VAP ++ +INI    Q+
Sbjct: 493 YIGEDGQKHRPVMLHRVILGSVDRFIGVLTEHFAGAFPVW---VAPKQVRVINI-TDGQL 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D C+ +  +L   G  V  D   E++G +   A +   P  +I+G   V    V ++ 
Sbjct: 549 --DYCKALVQKLKAEGFRVDSDLRNEKVGFKIREAQMEKIPHMLIIGQNEVDKELVSVRL 606

Query: 421 R 421
           R
Sbjct: 607 R 607


>gi|225175968|ref|ZP_03729960.1| prolyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225168556|gb|EEG77358.1| prolyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 483

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           P        NEK F    E   + A     + ++ G     GT ++     T+  +DG+ 
Sbjct: 198 PVVKGQKTENEK-FAGARETYSIEALMSDGKALQAGTSHNLGTHFAKVFDITYLDSDGEL 256

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACE 366
            +V   S+G+ + R+V A+I    D +G++ P  VAP ++ L+ I   K  ++V   A  
Sbjct: 257 KHVWQTSWGV-STRLVGAIIMVHGDDRGLVLPPKVAPTQVILVPIAPKKVREEVLPKAA- 314

Query: 367 KIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            IY  + + G  +  DD  E   G +F   ++ G PL++ VG + +   +  +  R  G 
Sbjct: 315 AIYEEIKEAGIRIEMDDREEYSPGWKFNEWEMKGVPLRIEVGPRDLEAGQAVLARRDNGE 374

Query: 426 REDMSL 431
           +E +++
Sbjct: 375 KETVAI 380


>gi|254462954|ref|ZP_05076370.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206679543|gb|EDZ44030.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 643

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 7/193 (3%)

Query: 24  KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           KL    G+ H  + + G   W P G +    + A +R  Q+  G +E++ P +    LW 
Sbjct: 250 KLGREMGLFHFEEVAPGSVIWHPNGWRVFQTLIAYMRRRQDVAGYVEVNTPDIMDRALWE 309

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG + +Y + M     ++D+     P +      ++   ++SYR+LP    +     R 
Sbjct: 310 TSGHWFNYKENMFLAQTQDDRDYALKPMNCPGHMMVYNHSLRSYRDLPVKIAEFGKVHRY 369

Query: 142 ELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           E      G++R R F   DA+ +  +PE       K+    L I+   G + + ++  + 
Sbjct: 370 EPSGALHGLLRVRSFTQDDAHIY-CSPEQLTDECLKVNDLILSIYKDFGFEDVHVKLSTR 428

Query: 201 P---IGGDLSHEF 210
           P   IG D S + 
Sbjct: 429 PENRIGSDESWDL 441


>gi|331232891|ref|XP_003329107.1| threonyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309308097|gb|EFP84688.1| threonyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 765

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 2/136 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +    + E  + G  E+  P + +A LW  SG +++Y  
Sbjct: 365 FHELSPGSCFWLPHGTRIYNTLVEFFKSEYRKRGYDEVISPNMYNAKLWQTSGHWENYAD 424

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M +L D   +     P +      IF S  +SYR LP       +  R+E      G+ 
Sbjct: 425 SMFKL-DIEKETFGLKPMNCPGHCLIFGSRDRSYRELPIRMADFGVLHRNEASGALSGLT 483

Query: 151 RSREFLMKDAYSFDLT 166
           R R F   DA+ F  T
Sbjct: 484 RVRRFCQDDAHHFCTT 499


>gi|301106649|ref|XP_002902407.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262098281|gb|EEY56333.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 764

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 128/337 (37%), Gaps = 74/337 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M   F++ I+S+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 367 PTSETIMYPAFKNWIRSHRDLPMKLNQWNNVVRWEFKNPTPFLRTREFLWQEGHTAHATK 426

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E +      +   Y   +    L ++PM                +     E + F   D+
Sbjct: 427 EEADEEVRAVLDFYAACYEE--LLAVPM----------------IKGVKTEKEKFAGADY 468

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                    T  +  I       Q     AATS +                  G   G +
Sbjct: 469 --------TTTIEGFIPATGRGIQ-----AATSHM-----------------LGQNFGKM 498

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F    +Y           DGK       S+G    R +  +I    D KG++ P  VAP 
Sbjct: 499 FGITAEYE----------DGKKLIPWQNSWGF-TTRSLGVMIMVHGDDKGLVLPPRVAPT 547

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI----------GSQFAVADL 397
           ++ ++ I   +Q   D  E+I+A+  ++   +   D G +I          G ++   +L
Sbjct: 548 QVIVVPIPFKNQ---DEVEEIFAKADEIVAKLA--DAGVRIEADKRCVYTPGWKYNHWEL 602

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G PL+  VG K ++  +V +  R  G +ED+   E+
Sbjct: 603 KGVPLRFEVGPKDIAKKQVRVVRRDNGAKEDIPEAEL 639


>gi|164687668|ref|ZP_02211696.1| hypothetical protein CLOBAR_01310 [Clostridium bartlettii DSM
           16795]
 gi|164603442|gb|EDQ96907.1| hypothetical protein CLOBAR_01310 [Clostridium bartlettii DSM
           16795]
          Length = 639

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 161/412 (39%), Gaps = 51/412 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   ++P G +  + +    RE       +E+  P + +  LW  SG +  Y K
Sbjct: 255 IPEEGPGFPLFMPKGMQLKNALLEFWREVHKEDNYVEIETPIILNRHLWETSGHWYHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +D+     P +       ++S   SYR+ P    ++    R EL     G+M
Sbjct: 314 ENMYTVKIDDQDFAIKPMNCPGGMLYYKSKPHSYRDFPMRVAELGRVHRHELSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F + PE  K     +      ++   G +    +  R E   +G D  
Sbjct: 374 RVRAFTQDDAHIF-MLPEQIKDEIKDVVRLIDSVYKVFGFQYGIELSTRPEDS-MGTDEE 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   +A+ G  +                   +++     I E   A Y    D H   L
Sbjct: 432 WE---IAENGLREAL-----------------EELGLAYEINEGDGAFYGPKIDFH---L 468

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRV 324
            D L        R  + G I        LP    AT+ G DG+ H  V +    +G++  
Sbjct: 469 RDCL-------GRTWQCGTI---QLDMQLPQRFDATYIGQDGEKHRPVMIHRVLLGSIER 518

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDD 383
              ++   + GK  +W   +AP ++ ++ I   ++   +   + ++A+    G  V  DD
Sbjct: 519 FIGILIEHYAGKFPVW---IAPTQVKILPISDKYNDYAKAVKDALFAK----GLRVEIDD 571

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E++G +   A L   P  ++VG K V  + V ++ R  G    +S++E +
Sbjct: 572 RAEKMGFKIREAQLEKVPYMLVVGEKEVEANAVSVRSRDKGEMGSLSVDEFV 623


>gi|70725135|ref|YP_252049.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68445859|dbj|BAE03443.1| threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) [Staphylococcus
           haemolyticus JCSC1435]
          Length = 638

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           RSK  L    E  R+AE  +H+ +   L+  M  + + G+  +L  GQ   + +   +RE
Sbjct: 224 RSKDQLDDYFEFLREAEERNHRRLGKQLKLFMFSEEAPGMPFYLSNGQFIRNQMENFLRE 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAM--IYGPTHEEVMTD 116
            Q +    E+  P + +  LW ESG +D Y + M     D ND A+  +  P H      
Sbjct: 284 VQLKHDYDEVRTPLMMNKRLWEESGHWDHYHENMYFTKVDENDYALKPMNCPGH----ML 339

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           IF++ ++SY++LP    +     R E      G++R R F   DA+ F
Sbjct: 340 IFKNELRSYKDLPLRIAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIF 387


>gi|83951679|ref|ZP_00960411.1| threonyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83836685|gb|EAP75982.1| threonyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 648

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 150/401 (37%), Gaps = 54/401 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R  Q   G +E++ P +    LW +SG ++ Y +
Sbjct: 260 MQEEAPGQVFWHPNGWTIYTELQDYMRRAQRAGGYVEVNTPQVVDRKLWEKSGHWEKYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 HMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGG 204
             GVMR R F   D + F    E    S  K F+ +L R++  LG ++  ++    P   
Sbjct: 380 LHGVMRVRGFTQDDGHIF--CREDQIESETKRFIDFLSRVYRDLGFENFSVKFSDRPEKR 437

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S E   + D  ET +  + +       + N  F    +LN     +  P         
Sbjct: 438 SGSDE---VWDKAETALKSATE-------AANCSF----TLNPGEGAFYGP--------- 474

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
            KL   L +          +G  +  GT    + LP  + AT+ G DG  H  V +    
Sbjct: 475 -KLEFVLTDA---------IGRDWQCGTLQVDFVLPERLDATYIGEDGAKHRPVMLHRAT 524

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G+      ++   H GK   W   +AP ++ + +I +      D   ++ A L   G  
Sbjct: 525 LGSFERFIGILIEEHAGKLPFW---LAPRQVVVASIVSE---ADDYVHEVVAGLRAQGVR 578

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   E+I  +     +   P+ +  G + V +  V ++
Sbjct: 579 AEADIRNEKINYKVREHSVGKVPVILACGLREVEEKTVSVR 619


>gi|302387069|ref|YP_003822891.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197697|gb|ADL05268.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 629

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 171/441 (38%), Gaps = 55/441 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T M      G   +LP G    + +    R+   R 
Sbjct: 229 EYLTRMEEAKKRDHRKLGKELGLFTLM--DEGPGFPFFLPKGMILKNLLIDYWRKIHERE 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIK 123
             +E+S P + S  LW  SG +D Y   M     D  D A+   P +      +++S   
Sbjct: 287 RYVEISTPMMLSRKLWETSGHWDHYKDNMYTTKIDEEDFAI--KPMNCPGGLLVYKSVPH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R E      G+MR R F   DA+ + +T E        +     
Sbjct: 345 SYRELPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIY-MTQEQITDEIKGVVRLID 403

Query: 183 RIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++ + G K    +  + E+  IG +   E   +A  G  +                   
Sbjct: 404 EVYSKFGFKYHVELSTKPENS-IGSEADWE---IATCGLRKAL----------------- 442

Query: 240 DDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
            D + +N +V +   A Y    D H E   DS+        R  + G I      + LP 
Sbjct: 443 -DELQMNYVVNEGDGAFYGPKIDFHLE---DSI-------GRTWQCGTI---QLDFQLPQ 488

Query: 298 -MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A + GADG+ H  + +     G++     ++     GK  +W   +AP +I ++ I 
Sbjct: 489 RFEAEYIGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGKFPVW---LAPVQIKILPI- 544

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      +++  +L K       D+  E+IG +   A L   P  +I+G K      
Sbjct: 545 --SEKFSTYSKEVLMKLKKADIRCEMDERDEKIGYKIREAQLEKVPYMLILGEKEAETGM 602

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           + ++ R  G    MS+E++I+
Sbjct: 603 LSVRSREQGDIGIMSIEKIID 623


>gi|295096109|emb|CBK85199.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 622

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 355 RVRGFTQDDAHIF-CTEDQVREEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 413

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  + +    P   +  +               A Y    +     L
Sbjct: 414 ------WDRAEADLAVALEENGIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G++  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPQRLSASYVGEDNERQVPVMIHRAILGSLER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D  +++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQA---DYVKELTQKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVSEVI 605


>gi|329764876|ref|ZP_08256467.1| prolyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138662|gb|EGG42907.1| prolyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 480

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G   + G  +S+P    F   D  + +    S+G+ + R++ A+I    D KG+
Sbjct: 224 GKALQMGTSHFLGQNFSIPFEVKFADKDNVEQFAWQTSWGV-SWRLIGAMIMVHGDDKGL 282

Query: 339 IWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  VAP ++ ++ I   D    +      +I  +L      V  DD  E   G +F  
Sbjct: 283 VLPPKVAPIQVVIVPIYKSDDARNIVFPKLNEIKEQLETKKIRVHVDDRNELTPGYKFND 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +L G PL++ +G K +   ++ +  R    RE +SL
Sbjct: 343 WELKGVPLRIEIGPKDIEKQQIVLAKRYN--REKISL 377


>gi|312898595|ref|ZP_07757985.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620514|gb|EFQ04084.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 635

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 153/412 (37%), Gaps = 46/412 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+   G   + P G      +     E  +R    ++S P + +  LW +SG +D Y +E
Sbjct: 256 HEEGPGFPFFHPKGMLLRQTLLKFWNELHDRYEYDQISTPIILNRQLWEQSGHWDHY-RE 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +     +D+     P +      +++S++ SYR+ P    ++ L  R EL     G+ R
Sbjct: 315 NMYFTTIDDEPYAIKPMNCPGGILVYKSNVHSYRDFPMRTAELGLVHRHELHGALHGLFR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F + P   K     +   +   +   GL          P   +LS    
Sbjct: 375 VRSFTQDDAHIF-MLPSQMKKEITGVLDLFDEAYKMFGL----------PYHVELS---- 419

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               T       S +  D    +     ++      I E   A Y    D H   + DS+
Sbjct: 420 ----TRPENSMGSDEIWDLATQTLKEAIEEKGVPYQINEGDGAFYGPKLDFH---VKDSI 472

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
                   R  + G I        +P     T+ G DG+ H  V +     G++     +
Sbjct: 473 -------GRTWQCGTI---QLDMLMPERFDMTYVGEDGQKHRPVMVHRACFGSIERFIGI 522

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   +AP ++ ++ I        D   ++  +  K G  V  D+  E+I
Sbjct: 523 LIEHYAGAFPVW---LAPTQVKILPISEKQM---DYAVELRKKFKKAGIRVELDESNEKI 576

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G +   A +   P   ++G K V +  V ++ R  G   D+    V  + +H
Sbjct: 577 GYKIRKAQMEKVPYMCVIGEKEVQEQTVSVRDRSQG---DLGSRNVDEFIAH 625


>gi|268319910|ref|YP_003293566.1| threonyl-tRNA synthetase 1 [Lactobacillus johnsonii FI9785]
 gi|262398285|emb|CAX67299.1| threonyl-tRNA synthetase 1 [Lactobacillus johnsonii FI9785]
          Length = 643

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 163/404 (40%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I +++   G   +  P L + D +  SG +  Y  +M    
Sbjct: 259 GLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQIREEFAKVLKLIMDVYKDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYYANDEMWEKSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      +K+ A L+K G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNEEAHGEY----ADKVRAELAKRGFRAEVDHRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              +     P  +++G + ++ + V ++   T  +   SL++ I
Sbjct: 586 IRESQTQKVPYTLVLGDEEMNANGVNVRRYGTEEQISKSLDDFI 629


>gi|45190586|ref|NP_984840.1| AEL021Cp [Ashbya gossypii ATCC 10895]
 gi|44983528|gb|AAS52664.1| AEL021Cp [Ashbya gossypii ATCC 10895]
          Length = 670

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 127/338 (37%), Gaps = 70/338 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E  M   F   ++SYR+LP  + Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 273 PTSETAMYPFFAKWVQSYRDLPLKYNQWTSVVRWEFKHPQPFLRTREFLWQEGHTAHLTK 332

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E +     ++   Y +++  + L ++P                +V     E + F   DF
Sbjct: 333 EEATDEVMQILDHYEQVY--VELLAVP----------------VVKGTKTENEKFAGADF 374

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                           S+   + Q                          + RGI+    
Sbjct: 375 T--------------TSVEGYIPQ--------------------------TGRGIQGATS 394

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   +   +   G  H   +    S+G+ + R +  ++ +  D KG++ P  V
Sbjct: 395 HHLGQNFSKMFNICVENPLGPQHPKVHAYQNSWGL-STRSIGVMVMTHSDNKGLVIPPRV 453

Query: 345 APFKISL----INIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           A  ++ +    I  K  + V     D+   I  RL K G  V  D       G +FA  +
Sbjct: 454 AQHQVVILPVGITAKTKEDVRSKIHDSARAIENRLHKAGIRVLGDYADNYTPGWKFAQYE 513

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G PL++  G K +  ++V    R  G +  + L ++
Sbjct: 514 LKGVPLRLEFGPKDMEKAQVTAVRRNDGAKISVPLADL 551


>gi|296282100|ref|ZP_06860098.1| threonyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 669

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 158/433 (36%), Gaps = 74/433 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    + + +R + +  G  E+  P +  A  W +SG +  Y +
Sbjct: 264 LQEEAHGSVFWHPQGYKIWRQLESYMRRKMDGAGYREIKTPQVMDARQWEQSGHWGKYRE 323

Query: 92  EMLRLAD-------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D             ++   M   P +      +F+  I SYR LP    ++   
Sbjct: 324 NMFVIPDEVPNTEDEGELVSKDADWMALKPMNCPAHVLVFKQGITSYRELPIRLGEMGCC 383

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R+E      G+MR R+F   DA+ F            K  V  +R F  L         
Sbjct: 384 HRNEPHGALHGLMRVRQFTQDDAHIF---------CTEKQVVEEVRAFIEL--------- 425

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +  +  D   ++ +       Q F S           + D+D         EQ      
Sbjct: 426 -ADAVYRDFGFKYAIKLALRPEQRFGS-----------DADWDK-------AEQELRDAV 466

Query: 258 ATSDVHNEKL-FDSLPENKRVSARGIE------VGHIFYFGTKYS---LP--MSATFKGA 305
           A + + N++  ++ LP      A  +E      +G  +  GT      LP  + A++ G 
Sbjct: 467 AEAGMMNDEYGWEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQGDRVLPERLDASYIGE 526

Query: 306 DGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H   M    I G+      ++     GK  +W   +AP +  +  I +      D 
Sbjct: 527 DGEKHRPVMLHRAIFGSYERFIGILIEHFAGKLPVW---LAPTQAVVATIVSD---ADDY 580

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +  A+L   G     D   E+I  +     L   P  ++VG +   +  V +  R  G
Sbjct: 581 ASEALAKLRAAGIRAESDLRNEKINYKVREHSLAKVPHLLVVGKREAEEGTVAV--RTLG 638

Query: 425 IRED--MSLEEVI 435
            RE   MSL+E I
Sbjct: 639 EREQRVMSLDEAI 651


>gi|194246824|ref|YP_002004463.1| prolyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|193807181|emb|CAP18622.1| Prolyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 473

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + GTK+S   +  F+  D K  +V   S+GI + R++ A++    D +G+
Sbjct: 223 GQSLQSGTSHFLGTKFSEAFNIKFQDLDNKIKFVYQTSWGI-STRLLGALVMVHGDDEGL 281

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           ++P  +AP +I +I ++  D        +I+  L K    V  D   +  G +F+  ++ 
Sbjct: 282 VFPPYIAPLQIIIIPLQPKDANVIKFSNEIFEVL-KNKYRVKLDVQNKNTGWKFSQYEMK 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL++ VG   +   ++ +  R   +++    ++++      F N
Sbjct: 341 GIPLRIEVGKHGLEKDEITVFTRYNFLKQQFKKDDLLTKIPFLFKN 386



 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG   +LP G    + +     +E  +T    +  P L + +L+ +  ++   +  E   
Sbjct: 36  KGFIIYLPDGYFLWEQIQKFFNKELQKTNHQNVYFPLLFTENLFKKEKKHIQGFQPETAF 95

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI--QLKFRDELRPRFGV 149
           +    DK     +I  PT E + +  +   I SYR+LP  + Q    +++    RP    
Sbjct: 96  VTFAGDKNLSEKLILRPTSEVLFSQHYEKTITSYRDLPKLYNQWCNVIRWEKSTRP---F 152

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LKSIPM 195
           +R +EFL ++ +    T   +        +S ++++ +LG  L +IP 
Sbjct: 153 LRGKEFLWQEGH----TAHANAQEAMSETLSIIKLYQKLGKELLAIPF 196


>gi|42519522|ref|NP_965452.1| threonyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|73919800|sp|Q74IC0|SYT_LACJO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41583811|gb|AAS09418.1| threonyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 643

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 163/404 (40%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I +++   G   +  P L + D +  SG +  Y  +M    
Sbjct: 259 GLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQIREEFAKVLKLIMDVYKDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYYANDEMWETSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      +K+ A L+K G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNEEAHGEY----ADKVRAELAKRGFRAEVDHRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              +     P  +++G + ++ + V ++   T  +   SL++ I
Sbjct: 586 IRESQTQKVPYTLVLGDEEMNANGVNVRRYGTEEQISKSLDDFI 629


>gi|312864463|ref|ZP_07724694.1| threonine--tRNA ligase [Streptococcus downei F0415]
 gi|311099590|gb|EFQ57803.1| threonine--tRNA ligase [Streptococcus downei F0415]
          Length = 651

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q   +G+  WLP G      +   I + +  +G   +  P + S DL+  SG +D Y
Sbjct: 254 MISQEVGQGLPFWLPDGATIRRTIERYITDREVASGYQHVYTPPIASVDLYKTSGHWDHY 313

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +A +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 314 REDMFPTMDMGDGEAFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R RE  + D ++F
Sbjct: 374 GLQRVREMTLNDGHTF 389



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 8/138 (5%)

Query: 301 TFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T+ GADG++H   M   GI +   R  A +IE+    KG  +P  +AP ++++I +   +
Sbjct: 502 TYIGADGEEHRPVMIHRGIVSTMERFTAYLIETY---KGA-FPTWLAPHQVTVIPVS--N 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V +
Sbjct: 556 EAHADYAWEVAKELRNHGVRVDVDERNEKMQYKIRQSQTHKIPYQLIVGDKEMADKSVNV 615

Query: 419 KHRLTGIREDMSLEEVIN 436
           +   +      SL E ++
Sbjct: 616 RRYGSKQTHTESLNEFVD 633


>gi|315607978|ref|ZP_07882971.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250447|gb|EFU30443.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 650

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 149/416 (35%), Gaps = 65/416 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +    L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTELRLRLQELLRSMLRPYNYQEVITPGIGGKSLYVTSGHYAHYGKDAFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     ++F    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVFARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+  K  +       L++F+  G  +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPDQVKAEFETNIDIILKVFNIFGFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W     A  +   EK   +  E
Sbjct: 428 RDPNDKEKYIGSD-----------------------EVWEESETAIKEACAEKGLKARVE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      +   D  K   V +     
Sbjct: 465 LGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNSKKTPVMIHRAPF 524

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G++    AV+     G   +W  PD VA   IS        +   D  + +      VG 
Sbjct: 525 GSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAKSVARYFDSVGV 576

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               D+  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M++EE
Sbjct: 577 RAIIDERNEKIGRKIRDNELKRVPYMVIVGEKESAEGLVSMRKQGGGEQATMTMEE 632


>gi|269798232|ref|YP_003312132.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094861|gb|ACZ24852.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 636

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 157/396 (39%), Gaps = 49/396 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I +   G   +LP G    + +    RE  +     E+  P + +  LW  SG +  Y 
Sbjct: 256 VIKEEGPGFPFFLPKGMALRNELENFWREVHHEFEYEEIRTPIILNKQLWETSGHWFHYR 315

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   + D  + A+   P +      ++++ + SYR+ P  + ++ L  R EL     G
Sbjct: 316 ENMYTTIIDEEEYAI--KPMNCPGGILVYQNEMHSYRDFPLRYAELGLVHRHELSGALHG 373

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLS 207
           + R R F   DA+ F + P   +    K+   + RI+ + GLK  + +  +     GD  
Sbjct: 374 LFRVRAFTQDDAHVF-MLPSQMQSELMKVIELFDRIYSQFGLKYHVELSTKPDNAMGD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + I  A T   +       + + I   +  F                Y    D H E  
Sbjct: 431 -DAIWEAATEALRNAIEAKGIPYVINPGDGAF----------------YGPKLDYHIE-- 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRV 324
            DSL        R  + G I       +LP      + G DG+ H  + +     G+M  
Sbjct: 472 -DSL-------GRTWQCGTI---QLDMNLPERFQIEYVGEDGQKHRPIMIHRACFGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              ++   + G    +P  +AP ++ ++ I + H +  +D  ++++    +V      DD
Sbjct: 521 FIGILTEHYAGA---FPTWMAPVQVKILPISEKHVEYAKDLAKQMHRDYVRVEV----DD 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             E+IG +   A +   P  ++VG K V +  V ++
Sbjct: 574 RSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVR 609


>gi|187734550|ref|YP_001876662.1| prolyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|259511572|sp|B2UL92|SYP_AKKM8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187424602|gb|ACD03881.1| prolyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 506

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 106/296 (35%), Gaps = 66/296 (22%)

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           +E+ + ++ GK  +       +  +  PT E V+   F     SYR+LP    Q     R
Sbjct: 100 LEAQKDEATGKTRMIPTGELTEPFVIRPTSETVIGAAFARWTSSYRDLPLKVNQWCNVMR 159

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E+RPR   +R+ EFL ++ ++   T E +      M   Y                   
Sbjct: 160 WEMRPRI-FLRTAEFLWQEGHTAHETREEAIEETLTMHKVY------------------- 199

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAAT 259
                   EF              +D +  P IP E T+ +               Y   
Sbjct: 200 -------EEF-------------QRDVLAIPTIPGEKTEAERFPGAEQT-------YTVE 232

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           + V + K               I+ G   + G  +S   +  F G D    +    S+G+
Sbjct: 233 AMVQDRK--------------AIQAGTSHFLGQNFSKSQNICFAGRDNTQQFAWTSSWGV 278

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARL 372
            + R++ A+I    D  G++ P  VAP +I +I +   +   Q   D CE++   L
Sbjct: 279 -STRMIGALIMMHSDDDGLVCPPRVAPQQIVIIPVTPKEESRQAVLDHCEELARTL 333


>gi|160871539|ref|ZP_02061671.1| threonyl-tRNA synthetase [Rickettsiella grylli]
 gi|159120338|gb|EDP45676.1| threonyl-tRNA synthetase [Rickettsiella grylli]
          Length = 642

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 156/406 (38%), Gaps = 60/406 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   IR    +    E+  P L +  LW +SG +D + K
Sbjct: 255 VQEEAPGMVFWHPRGWTVYQRIEQYIRSCLKKAAYQEIQTPQLLARQLWEKSGHWDKFFK 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           EM      N +  I  P        IF   IKSYR+LP    +     R+E      G++
Sbjct: 315 EMFTTVTENTEFAI-KPMSCPGHIQIFNQGIKSYRDLPLRLAEFGSCHRNEPSGALHGLL 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDL 206
           R R F+  D + F    E    S    F+  L  ++   G   + ++  + P   +G + 
Sbjct: 374 RVRGFVQDDGHIF--CTEDQIQSEVSAFIDLLYNVYADFGFNDVILKLATRPEARVGSNA 431

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S       D  E  +  + D                 +   +  +WT  +   +  +  K
Sbjct: 432 S------WDKAEKALALALD-----------------ARKGL--EWTYAHGEGA-FYGPK 465

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-G 320
           +  SL ++         +  I+  GT    +S+P  + A +    G+ H   M    I G
Sbjct: 466 IEFSLKDS---------LNRIWQCGTLQVDFSMPQRLGAEYVNERGERHVPVMLHRAILG 516

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCD 378
           ++     ++   + G   +W   +AP +I ++ I  K H        ++I   L  +   
Sbjct: 517 SIERFIGILIEHYAGHFPLW---LAPTQIVIMTITDKQH-----HYAKEIAQELEALALR 568

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           V  D   E+I  +     L   P Q+++G + V+  +V ++ R TG
Sbjct: 569 VKLDLRNEKISFKIREHSLQKIPYQLVIGDQEVASKQVTVR-RQTG 613


>gi|229819712|ref|YP_002881238.1| tRNA synthetase class II (G H P and S) [Beutenbergia cavernae DSM
           12333]
 gi|229565625|gb|ACQ79476.1| tRNA synthetase class II (G H P and S) [Beutenbergia cavernae DSM
           12333]
          Length = 409

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 130/329 (39%), Gaps = 52/329 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      + A   E+   +G   +  P L    L+  SG +  +  EM    
Sbjct: 24  GLPLWLPDGAVIRGELEAFSLEQALASGCRRVYTPVLAKRSLFERSGHWAKFSGEMFPEM 83

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-RSREFL 156
               ++++  P +    T +F +  +SYR+LPF   ++   FR EL    G + R R+  
Sbjct: 84  PLGGESLVLRPVNCPHHTQVFAAEGRSYRDLPFRLAEVGSMFRSELSGVVGGLSRVRQIN 143

Query: 157 MKDAYSF----------DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           + DA+SF           L     +H Y+ + +     ++RL      +R +SG   GD 
Sbjct: 144 LDDAHSFCAPDQVADEVALALRAIRHCYDVLGIDV--AYYRLS-----VRGDSGSYLGD- 195

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  A    ++ +  +   +  +P E             VE   A Y    DV   +
Sbjct: 196 ------DASWHRSERYLREALDELGLPYER------------VEGEAAIYGPKIDV---Q 234

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           + D+    + +S   ++      FG         T+ G DG  H   +   G + +M  +
Sbjct: 235 VADARGREETLSTVQVDEQMPGRFGL--------TYTGDDGARHRPVLVHRGLLSSMERM 286

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI 354
            A++   HDG+   W   +AP ++ ++ +
Sbjct: 287 TALLVELHDGRMPTW---LAPVQVRVLPV 312


>gi|109898814|ref|YP_662069.1| threonyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|109701095|gb|ABG41015.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Pseudoalteromonas atlantica T6c]
          Length = 638

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/419 (20%), Positives = 155/419 (36%), Gaps = 44/419 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +R +       E+  P +    LW +SG +D Y + 
Sbjct: 257 QEEAPGMVFWHNDGWSIYTELEKFVRSKLREYEYDEVKAPLMMDRSLWEKSGHWDKYAEN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M        +  +  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTTSEKREYAV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  T +           S   I+   G ++I ++  + P     S E  
Sbjct: 376 VRGFTQDDAHIF-CTDDQILAEVGGCIDSVYEIYKIFGFENISVKLSTRPEKRVGSDEVW 434

Query: 212 VLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             A+    +   SK  +DF  +P E   +   I                       L D 
Sbjct: 435 DKAEKELAEALTSKG-IDFQYLPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +S+P  + +T+   DG+     M    I G++     
Sbjct: 474 LD-------RAWQCGTV---QLDFSMPGRLGSTYVAEDGERKVPVMIHRAILGSLERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G   +W   +AP +  ++NI  +     +  +K+  +L ++G     D   E+
Sbjct: 524 ILIEEYSGFFPLW---LAPTQAVVMNITDNQS---EYAQKVVKKLKEIGIRAKSDLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           IG +     L   P  ++VG K +   ++ ++ R       MS++  I  A  +  + +
Sbjct: 578 IGFKIREHTLRRVPYLLVVGDKEIEAGEIAVRSRKGDDLGKMSVDAFIELACEQIKSKQ 636


>gi|329667761|gb|AEB93709.1| threonyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 643

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 163/404 (40%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I +++   G   +  P L + D +  SG +  Y  +M    
Sbjct: 259 GLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQIREEFAKVLKLIMDVYKDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYYANDEMWETSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH +      +K+ A L+K G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNEEAHGEY----ADKVRAELAKRGFRAEVDHRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              +     P  +++G + ++ + V ++   T  +   SL++ I
Sbjct: 586 IRESQTQKVPYTLVLGDEEMNANGVNVRRYGTEEQISKSLDDFI 629


>gi|238018994|ref|ZP_04599420.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
 gi|237864478|gb|EEP65768.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
          Length = 636

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 157/395 (39%), Gaps = 47/395 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I +   G   +LP G    + +    RE  +     E+  P + +  LW  SG +  Y 
Sbjct: 256 VIKEEGPGFPFFLPKGMALRNELENFWREVHHEFDYEEIRTPIILNKQLWETSGHWFHY- 314

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +     +D+     P +      ++++ + SYR+ P  + ++ L  R EL     G+
Sbjct: 315 RENMYTTIIDDEEYAIKPMNCPGGILVYQNEMHSYRDFPLRYAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSH 208
            R R F   DA+ F + P+  +    K+   + RI+ + GLK  + +  +     GD   
Sbjct: 375 FRVRAFTQDDAHVF-MLPDQMQSELMKVIELFDRIYSQFGLKYHVELSTKPDNAMGD--- 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + I  A T   +       + + I   +  F                Y    D H E   
Sbjct: 431 DAIWEAATEALRNAIEAKGIPYVINPGDGAF----------------YGPKLDYHIE--- 471

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           DSL        R  + G I       +LP      + G DG+ H  + +     G+M   
Sbjct: 472 DSL-------GRTWQCGTI---QLDMNLPERFQIEYVGEDGQKHRPIMIHRACFGSMERF 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             ++   + G    +P  +AP ++ ++ I + H +  ++  ++++    +V      DD 
Sbjct: 522 IGILTEHYAGA---FPTWMAPVQVKILPISEKHVEYAKELAKQMHRDYVRVEV----DDR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            E+IG +   A +   P  ++VG K V +  V ++
Sbjct: 575 SEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVR 609


>gi|308233449|ref|ZP_07664186.1| threonyl-tRNA synthetase [Atopobium vaginae DSM 15829]
 gi|328944509|ref|ZP_08241970.1| threonine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327490910|gb|EGF22688.1| threonine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 592

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+++   G   WLP G +  + +    +E Q + G  ++  P + S  LW  SG +D Y 
Sbjct: 207 MVNEAGPGFPFWLPNGMRIRNALMNYWQEMQEKFGYEQIQTPVILSRKLWETSGHWDHY- 265

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +++     P +      ++ +  +SYR+LP    +  L  R EL+    G+
Sbjct: 266 KENMYTTKIDEEDFAIKPMNCPGACLVYMNKPRSYRDLPLKLAEAGLDHRHELKGTLHGL 325

Query: 150 MRSREFLMKDAYSF 163
            R REF   DA+ F
Sbjct: 326 FRVREFTQDDAHLF 339


>gi|260433159|ref|ZP_05787130.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416987|gb|EEX10246.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 652

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 14/206 (6%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L +L+E    A+    KL     + H  + + G   W P G      +   +R +Q 
Sbjct: 238 KAYLHMLEEA---AKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWTIYTQLQDYMRRQQR 294

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDI 117
           R G +E++ P +    LW  SG +D Y + M  +       R        P +     +I
Sbjct: 295 RGGYVEVNTPQVVDRKLWERSGHWDKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVEI 354

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+  +KSYR+LP    +     R E      G+MR R F   DA+ F  + E        
Sbjct: 355 FKQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFAQDDAHIF--STEDQIGDECA 412

Query: 177 MFVSYLR-IFHRLGLKSIPMRAESGP 201
            F+ +L  ++  LG  S  ++    P
Sbjct: 413 RFIGFLTDVYKDLGFDSFKVKFSDRP 438


>gi|146311380|ref|YP_001176454.1| threonyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166987323|sp|A4W9M3|SYT_ENT38 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145318256|gb|ABP60403.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Enterobacter
           sp. 638]
          Length = 642

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +   N        ++   G + I ++  + P   IG D +
Sbjct: 375 RVRGFTQDDAHIF-CTEGQVRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 434 ------WDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G++  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPQRLSASYVGEDNERQIPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D  +++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQA---DYVKELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSLDVNEVI 625


>gi|291085451|ref|ZP_06353132.2| threonine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291071041|gb|EFE09150.1| threonine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 622

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEFQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G + +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGENNERQVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVI 605


>gi|167562968|ref|ZP_02355884.1| threonyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 635

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      V   +R   +  G +E+  P +    LW  SG + +Y +
Sbjct: 255 IQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAVKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           G+MR R F+  DA+ F    + +    ++NK+ +S   ++   G   I ++    P
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQINSEAIAFNKLAMS---VYEDFGFDRIDIKLSLRP 423


>gi|145589014|ref|YP_001155611.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083617|sp|A4SX33|SYT_POLSQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145047420|gb|ABP34047.1| Ser-tRNA(Thr) hydrolase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 640

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 150/397 (37%), Gaps = 50/397 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      V   +R      G  E+  P +    LW +SG +D+Y KE
Sbjct: 256 QEEAPGLIFWHPKGWSIWQEVEQYMRRVYQNEGYQEVKAPQILDRGLWEKSGHWDNY-KE 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +   +  ++A    P +      I+ S + SYR LP  F +     R+E      G+MR
Sbjct: 315 NMFTTESENRAYALKPMNCPGHVQIYNSGLHSYRELPLRFGEFGQCHRNEPSGALHGLMR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP---IGGDLS 207
            R F   D + F    E    S    F   +R ++   G   + ++    P   +G D  
Sbjct: 375 VRGFTQDDGHIF--CTEDQIQSEVAAFDKAVRAVYQDFGFTEVAVKLALRPAKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       D +   + +   +++++    +        Y    + H   L
Sbjct: 431 ----AIWDKAE-------DALRGALKASGQEWEELPGEGAF-------YGPKIEYH---L 469

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRV 324
            DS+        R  + G I      +S+P  + A +   D  +   V +    +G++  
Sbjct: 470 KDSI-------GRTWQCGTI---QVDFSMPARLGAEYVAEDNSRKTPVMLHRAIVGSLER 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++  +H G   +W   +AP +  ++NI  +        +K+   L K G  V  D  
Sbjct: 520 FIGILIENHAGNMPVW---LAPTQAVVLNISGNSAAY---AQKVQQSLKKQGFRVESDLR 573

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+I  +     L   P  ++VG K    + V ++ R
Sbjct: 574 NEKITYKIREHALQKIPFLLVVGDKESESNTVAVRAR 610


>gi|3617770|emb|CAA74705.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 709

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+ +   +   HQ S G Y +LPLG +  + +   I+
Sbjct: 300 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 355

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTD 116
            +    G  E+  P + + +LW  SG  D+Y   M      N +   +G  P +      
Sbjct: 356 NQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF---NIEKQEFGLKPMNCPGHCL 412

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           IF+  ++SYR LP       +  R+E      G+ R R F   DA+ F  T +
Sbjct: 413 IFQHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQ 465


>gi|2191162|gb|AAB61048.1| Similar to threonyl-tRNA synthetase; coded for by A. thaliana cDNA
           R65376 [Arabidopsis thaliana]
          Length = 702

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+ +   +   HQ S G Y +LPLG +  + +   I+
Sbjct: 280 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 335

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTD 116
            +    G  E+  P + + +LW  SG  D+Y   M      N +   +G  P +      
Sbjct: 336 NQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF---NIEKQEFGLKPMNCPGHCL 392

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           IF+  ++SYR LP       +  R+E      G+ R R F   DA+ F  T +
Sbjct: 393 IFQHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQ 445


>gi|20808138|ref|NP_623309.1| threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|22654110|sp|Q8R9A4|SYT_THETN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|20516726|gb|AAM24913.1| Threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 644

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           IH    G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y K
Sbjct: 264 IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKRGYQEIRTPIILNEELWKRSGHWDHY-K 322

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + + +     P +      +++S ++SYR+LP    ++ L  R EL     G+M
Sbjct: 323 ENMYFTEIDGQTYAIKPMNCPGAMLVYKSTLRSYRDLPLRLCELGLVHRHELSGVLHGLM 382

Query: 151 RSREFLMKDAYSFDLTPE 168
           R R F   DA+ F +TPE
Sbjct: 383 RVRSFTQDDAHLF-MTPE 399



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 304 GADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVC 361
           G DG+ H  + +     G++     ++     G    +P  +AP ++ ++ I + H +  
Sbjct: 506 GPDGEKHRPIMLHRVIYGSIERFIGILTEHFAGA---FPTWLAPVQVRVLPISEKHHEYA 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R    K+Y RL +    V  DD  E+IG +   A L   P  +IVG + V +  V ++ R
Sbjct: 563 R----KVYERLQEHDIRVELDDRNEKIGYKIREAQLQKIPYMLIVGDREVEEGNVSLRSR 618

Query: 422 LTGIREDMSLEEVIN 436
             G    +SL+  I 
Sbjct: 619 KDGDLGPISLDNFIE 633


>gi|296102767|ref|YP_003612913.1| threonyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057226|gb|ADF61964.1| threonyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 642

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  + +    P   +  +               A Y    +     L
Sbjct: 434 ------WDRAEADLAVALEENGIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G++  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPQRLSASYVGEDNERQVPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D  +++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQA---DYVKELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVSEVI 625


>gi|294793964|ref|ZP_06759101.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455534|gb|EFG23906.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 636

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 157/396 (39%), Gaps = 49/396 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I +   G   +LP G    + +    RE  +     E+  P + +  LW  SG +  Y 
Sbjct: 256 VIKEEGPGFPFFLPKGMALRNELENFWREVHHEFEYEEIRTPIILNKQLWETSGHWFHYR 315

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   + D  + A+   P +      ++++ + SYR+ P  + ++ L  R EL     G
Sbjct: 316 ENMYTTIIDEEEYAI--KPMNCPGGILVYQNEMHSYRDFPLRYAELGLVHRHELSGALHG 373

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLS 207
           + R R F   DA+ F + P   +    K+   + RI+ + GLK  + +  +     GD  
Sbjct: 374 LFRVRAFTQDDAHVF-MLPSQMQSELMKVIELFDRIYSQFGLKYHVELSTKPDNAMGD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + I  A T   +       + + I   +  F                Y    D H E  
Sbjct: 431 -DAIWEAATEALRNAIEAKGIPYVINPGDGAF----------------YGPKLDYHIE-- 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRV 324
            DSL        R  + G I       +LP      + G DG+ H  + +     G+M  
Sbjct: 472 -DSL-------GRTWQCGTI---QLDMNLPERFQIEYVGEDGQKHRPIMIHRACFGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              ++   + G    +P  +AP ++ ++ I + H +  +D  ++++    +V      DD
Sbjct: 521 FIGILTEHYAGA---FPTWMAPVQVKILPISEKHVEYAKDLAKQMHRDYVRVEV----DD 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             E+IG +   A +   P  ++VG K V +  V ++
Sbjct: 574 RSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVR 609


>gi|310767522|gb|ADP12472.1| threonyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 642

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 154/428 (35%), Gaps = 56/428 (13%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L I +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 230 AAYLLRIEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +D+Y + M   +  N +  I  P +      IF   +K
Sbjct: 288 YQYQEVKGPFMMDRVLWEKTGHWDNYKEAMFTTSSENREYCI-KPMNCPGHVQIFNQGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N       
Sbjct: 347 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVY 405

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSEN 236
             +   G + I ++  + P   IG D       L D  E  +  +    D P    P E 
Sbjct: 406 DTYSTFGFEKIVVKLSTRPEKRIGSD------DLWDRSEADLAAALKENDIPFEYQPGEG 459

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I                       L D L        R  + G +      +SL
Sbjct: 460 AFYGPKIEFT--------------------LHDCLD-------RAWQCGTV---QLDFSL 489

Query: 297 P--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  ++A++ G   +     M    I G+M     ++   + G    +P  +AP ++ ++N
Sbjct: 490 PGRLNASYVGESNERQVPVMIHRAILGSMERFIGILTEEYAG---FFPTWLAPVQVVVMN 546

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        +   ++  +L   G     D   E+IG +     L   P  ++ G K V  
Sbjct: 547 ITDGQS---EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEA 603

Query: 414 SKVEIKHR 421
            KV ++ R
Sbjct: 604 GKVAVRTR 611


>gi|167570156|ref|ZP_02363030.1| threonyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 635

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      V   +R   +  G +E+  P +    LW  SG + +Y +
Sbjct: 255 IQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAVKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           G+MR R F+  DA+ F    + +    ++NK+ +S   ++   G   I ++    P
Sbjct: 371 GLMRVRGFVQDDAHIFCTEEQINSEAIAFNKLAMS---VYEDFGFDRIDIKLSLRP 423


>gi|238791701|ref|ZP_04635338.1| Threonyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238728805|gb|EEQ20322.1| Threonyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 642

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P     S + 
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDDL 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+          D      P E   +   I                       L D 
Sbjct: 434 WTRAEDDLAAALTENDIPFEYQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +SLP  +SA++ G +       M    I G+M     
Sbjct: 474 LD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D   E+
Sbjct: 524 ILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 578 IGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|163795474|ref|ZP_02189441.1| Threonyl-tRNA synthetase [alpha proteobacterium BAL199]
 gi|159179460|gb|EDP63991.1| Threonyl-tRNA synthetase [alpha proteobacterium BAL199]
          Length = 640

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 4/172 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W P G      +   IR      G  E+  P L    LW  SG +D + +
Sbjct: 256 IQEEAVGSVFWHPKGWTLYRVIENYIRGRLEEGGYREIKTPQLIDRALWEASGHWDKFRE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +DK +   P +      +++  +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTANAEDDKVLALKPMNCPGHVQVYKQGLKSYRDLPLRLAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGP 201
           R R F   DA+ F    E    S +  F   L+  +R  G + I ++    P
Sbjct: 376 RVRAFTQDDAHIF--CTEDQITSESIRFCDLLKSVYRDFGFEDIRIKFSDRP 425


>gi|15081626|gb|AAK82468.1| AT5g26830/F2P16_90 [Arabidopsis thaliana]
 gi|29028762|gb|AAO64760.1| At5g26830/F2P16_90 [Arabidopsis thaliana]
          Length = 676

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+ +   +   HQ S G Y +LPLG +  + +   I+
Sbjct: 267 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 322

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTD 116
            +    G  E+  P + + +LW  SG  D+Y   M      N +   +G  P +      
Sbjct: 323 NQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF---NIEKQEFGLKPMNCPGHCL 379

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           IF+  ++SYR LP       +  R+E      G+ R R F   DA+ F  T +
Sbjct: 380 IFQHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQ 432


>gi|50086067|ref|YP_047577.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|73919764|sp|Q6F860|SYT_ACIAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49532043|emb|CAG69755.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 640

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 54/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQALEQYMRKVQQDNGYQEVRTPQIVDFTLWEKSGHAANYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPVRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDGHIF-CTKEQIGKEVADFIQLTLDVYKDFGFEDVQMKLSTRPEKRVGDDR- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 432 -----LWDLAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP  + A+F   D  +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPIRLDASFVTEDNERDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  +AP +  ++NI        +AC+++ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLAPVQACVMNITDSQA---EACQQVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610


>gi|315038857|ref|YP_004032425.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312276990|gb|ADQ59630.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 645

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 160/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQDEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTEKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N  AH +      EK+   L+K G     D+  E++G +
Sbjct: 534 KGAFPTW---LAPIQAEIIPVNNDAHGEY----AEKVRQELAKRGFRAEVDNRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + + +  V ++   T      SL++ I 
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLDDFIK 631


>gi|319405749|emb|CBI79372.1| Threonyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 654

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 21/215 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  + S G+  W P G K   N+ + +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEESPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTD 116
           +     E+  P +    LW  SG ++ Y + M +    AD  +   IY   P +      
Sbjct: 289 DNHKYAEVQAPQVLDKSLWEISGHWEWYKENMFKTIPAADDWNNEHIYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH--S 173
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    S
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIFCTEEQLADECLS 408

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            N + +S    +   G K I ++  + P   +G D
Sbjct: 409 INDLILS---TYADFGFKEISIKLSTRPEKRVGSD 440


>gi|261339515|ref|ZP_05967373.1| threonine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288318328|gb|EFC57266.1| threonine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 622

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 355 RVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 413

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  + +    P   +  +               A Y    +     L
Sbjct: 414 ------WDRAEADLAVALEENGIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G++  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPQRLSASYVGEDNERQVPVMIHRAILGSLER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D  +++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQA---DYVKELTQKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVSEVI 605


>gi|253577580|ref|ZP_04854892.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843049|gb|EES71085.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 645

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/423 (20%), Positives = 168/423 (39%), Gaps = 55/423 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  WLP G      +   I + + R G   +  P L + DL+  SG ++ Y ++M  
Sbjct: 263 GQGLPIWLPKGATVRRTLERYIVDIEERLGYQHVYTPVLGNVDLYKTSGHWEHYQEDMFP 322

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               + +  +  P +      +++S ++SYR+LP    ++ ++ R E+     G+ R R 
Sbjct: 323 KMAIDTEEFVLRPMNCPHHMMVYKSDMRSYRDLPIRIAELGMQHRYEMSGALTGLHRVRS 382

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + DA+ F    +  K  + ++     ++++  G+     R         LS+      
Sbjct: 383 MTLNDAHIF-CRLDQIKDEFKRVLDLIKQVYNDFGIHEYRFR---------LSYR----- 427

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP----------YAATSDVHN 264
           D  +T+ +   D M       NT       L  +VE+   P          Y    DV  
Sbjct: 428 DPQDTEKYYQNDEM------WNTAQR---MLREVVEEAGLPFFEAEGEAAFYGPKLDV-- 476

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMR 323
            ++  +L + + +S   I+    F    ++ L     + G DG+ H   +   GI G M 
Sbjct: 477 -QIKTALGKEETLSTVQID----FLLPERFEL----EYVGDDGQKHRPVVLHRGILGTME 527

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWD 382
              A +  +  G   +W   +AP +  ++ + ++ D   R   +K+ A     G     D
Sbjct: 528 RFTAFLLENFAGNLPLW---LAPVQAKVLPVSSNFDAYARQVEDKLRA----AGIRAESD 580

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              E++G +   A L   P  ++VG    +   V ++ R  G     +++EVI       
Sbjct: 581 LRNEKLGYKIREAQLEKLPYMLVVGENEQNAGTVSVRKRGQGDLGAKAVDEVIAQLQEEI 640

Query: 443 SNN 445
            N+
Sbjct: 641 RNH 643


>gi|62422036|gb|AAX82600.1| putative threonyl-tRNA synthetase [Lactobacillus reuteri]
          Length = 601

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 161/409 (39%), Gaps = 47/409 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 217 GLPYWLPKGATIRRTIERYIIDREVADGHQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 276

Query: 98  DRNDKAMIYG-----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  D  M+       P+H +V    ++ HI+SYR+LP    ++ +  R E      G+ R
Sbjct: 277 DMGDGEMLESRPMNCPSHIQV----YKHHIRSYRDLPLRIAELGMMHRYEKSGALSGLQR 332

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE  + D ++F +T +  +  + K+    + ++    +     R              +
Sbjct: 333 VREMTLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDFDITDYSFR--------------L 377

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDS 270
            L D    + + + D M     S      D ++L+    E   A Y    D+  +    +
Sbjct: 378 SLRDPKNVKKYYANDEMWEKSQSMLKSAMDDLNLDYYEAEGEAAFYGPKLDIQTKT---A 434

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVI 329
           L  ++ +S   ++    F    ++ L    ++ G DGK+H   M   G +G M    A +
Sbjct: 435 LGNDETMSTIQLD----FMLPERFGL----SYVGQDGKEHQPVMIHRGVVGTMERFMAYL 486

Query: 330 ESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              + G    W   +AP ++ +I  N +AH +   +  +K+ A   +V          E+
Sbjct: 487 TEIYKGAFPTW---LAPEQVHIIPVNEEAHGEYADNLAKKMKAANIRVNV----AHRNEK 539

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G +   A     P  ++VG    + + V +       + +MS E  +N
Sbjct: 540 MGYKIREAQTQKVPYTLVVGDDEKNSNGVSVSKYGEKEQNEMSQEAFMN 588


>gi|167520264|ref|XP_001744471.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776802|gb|EDQ90420.1| predicted protein [Monosiga brevicollis MX1]
          Length = 473

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 7/174 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G +    + A++R   +  G  E+  P +    LW  SG ++ Y ++M  
Sbjct: 89  SPGAPFWLPHGLRIFKRLEALVRGVHSNYGFEEVKSPLVYKQHLWNTSGHWEHYSEDMTV 148

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L  + D+ +     P +      +F     SYR LP  F +     R+E      G+ R 
Sbjct: 149 LQHKEDEEVCQALKPMNCPAHCIMFSHEPHSYRELPLRFAEHSALHRNEASGALSGLTRV 208

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS---IPMRAESGPIG 203
           R+F   D + F   P+       +   +   ++ RLGL     +  R E+G +G
Sbjct: 209 RQFHQDDGHIF-CRPDQVSSEVARCLEAIGVVYARLGLTPTAVLSTRPETGYVG 261


>gi|30690426|ref|NP_198035.2| threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)
           [Arabidopsis thaliana]
 gi|27735258|sp|O04630|SYTM_ARATH RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; Flags:
           Precursor
 gi|332006227|gb|AED93610.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 709

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+ +   +   HQ S G Y +LPLG +  + +   I+
Sbjct: 300 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 355

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTD 116
            +    G  E+  P + + +LW  SG  D+Y   M      N +   +G  P +      
Sbjct: 356 NQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF---NIEKQEFGLKPMNCPGHCL 412

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           IF+  ++SYR LP       +  R+E      G+ R R F   DA+ F  T +
Sbjct: 413 IFQHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQ 465


>gi|237731269|ref|ZP_04561750.1| threonyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226906808|gb|EEH92726.1| threonyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 642

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEFQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G + +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGENNERQVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVI 625


>gi|330888315|gb|EGH20976.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 402

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 5/151 (3%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  R G+ H  + + G+  W P G      +   +R+ Q   G +E+  P 
Sbjct: 237 EAEKRDHRKIGKRLGLFHTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y   M      +    I  P +      +F   +KSYR LP    
Sbjct: 297 VVDRSLWEKSGHWANYADNMFTTESESRDYAI-KPMNCPCHVQVFNQGLKSYRELPMRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +     R+E      G+MR R F   DA+ F
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF 386


>gi|259908578|ref|YP_002648934.1| threonyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224964200|emb|CAX55707.1| Threonyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283478547|emb|CAY74463.1| thrS [Erwinia pyrifoliae DSM 12163]
          Length = 642

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 154/428 (35%), Gaps = 56/428 (13%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L I +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 230 AAYLLRIEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +D+Y + M   +  N +  I  P +      IF   +K
Sbjct: 288 YQYQEVKGPFMMDRVLWEKTGHWDNYKEAMFTTSSENREYCI-KPMNCPGHVQIFNQGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N       
Sbjct: 347 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVY 405

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSEN 236
             +   G + I ++  + P   IG D       L D  E  +  +    D P    P E 
Sbjct: 406 DTYSTFGFEKIVVKLSTRPEKRIGSD------DLWDRSEADLAAALKENDIPFEYQPGEG 459

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I                       L D L        R  + G +      +SL
Sbjct: 460 AFYGPKIEFT--------------------LHDCLD-------RAWQCGTV---QLDFSL 489

Query: 297 P--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  ++A++ G   +     M    I G+M     ++   + G    +P  +AP ++ ++N
Sbjct: 490 PGRLNASYVGESNERQVPVMIHRAILGSMERFIGILTEEYAG---FFPTWLAPVQVVVMN 546

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        +   ++  +L   G     D   E+IG +     L   P  ++ G K V  
Sbjct: 547 ITDGQS---EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEA 603

Query: 414 SKVEIKHR 421
            KV ++ R
Sbjct: 604 GKVAVRTR 611


>gi|297527450|ref|YP_003669474.1| threonyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256366|gb|ADI32575.1| threonyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 614

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 150/367 (40%), Gaps = 53/367 (14%)

Query: 89  YGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +G  +  L   N+K ++ Y   H++    + R  I SY+NLPF  +++   +R E R   
Sbjct: 268 FGDRLYELKVDNEKFVLRYAACHQQFA--MLRDWIISYKNLPFGMFEVADSYRLEQRGEL 325

Query: 148 GV-MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            +  R R+F M D            H  NK     +++   +  K +    E   IG   
Sbjct: 326 NLCFRLRKFYMPDL-----------HILNKDLDEAIKMSRIVQDKIL---EEIAKIGRKY 371

Query: 207 SHEFIVLADTGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              + V +D  E       +F+   ++P+            L S++      +    + H
Sbjct: 372 VALYNVTSDFFEKHRDVLIEFVRRENYPV------------LVSVIPSGIYYWVLNVEYH 419

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GA 321
              + D+L   + ++   I++G+    G ++++    T+    G+ H+  +    I  G 
Sbjct: 420 ---IIDNLNRPREIATFQIDIGN----GKRFNI----TYTDEKGEKHHPVIIHTAIIGGI 468

Query: 322 MRVVAAVIESS----HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            R +  + +++     +GK    P  +AP ++ +I IK       D  EK+  ++   G 
Sbjct: 469 ERFIYTIFDTAALMEREGKTPYIPTWLAPVQVRIIPIKNK---YLDYAEKVAEKIENAGF 525

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD GE +G +   A     P  V++G + V  + + ++ R T  ++ M  +E+I  
Sbjct: 526 RVDIDDRGESLGKKIRDAGREWIPYIVVIGEREVKSNTINVRIRRTNDQKVMVTDELIRI 585

Query: 438 ASHRFSN 444
                 N
Sbjct: 586 LEEETKN 592


>gi|239623178|ref|ZP_04666209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522545|gb|EEQ62411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 643

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 158/414 (38%), Gaps = 53/414 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  +   G   +LP G    + +    RE   R G  E+S P + S  LW  SG +D Y 
Sbjct: 262 MFAEEGPGFPFFLPKGMTLKNTLIDYWREIHQREGYQEVSTPIILSRKLWENSGHWDHYK 321

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +      ++++   SYR+LP    ++ L  R E   +  G
Sbjct: 322 DNMYTTVIDEEDYAV--KPMNCPGGMLVYKNQPHSYRDLPLRVGELGLVHRHEKSGQLHG 379

Query: 149 VMRSREFLMKDAYSF--DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +MR R F   DA+ F  D   E       ++      ++ + G +               
Sbjct: 380 LMRVRCFTQDDAHIFMRDDQIEDEIKGVTRLINE---VYTQFGFEY-------------- 422

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNE 265
              F+ L+   E  +   +D+ +          DD + L  IV +   A Y    D H  
Sbjct: 423 ---FVELSTRPEDSMGSDEDW-EMATNGLKKALDD-MGLEYIVNEGDGAFYGPKIDFH-- 475

Query: 266 KLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGA 321
            L DSL        R  + G I   F    ++ L  +A     DG K   + +     G+
Sbjct: 476 -LRDSL-------GRTWQCGTIQLDFQMPQRFDLEYTA----EDGSKKRPIMIHRVCFGS 523

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +     ++     GK  +W   +AP ++ +I +    +   +    +Y +L   G     
Sbjct: 524 IERFIGILIEHFAGKFPVW---LAPVQVKVIPVS---EKSMEYATGVYEKLKAAGIRTEL 577

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D   E++G +   A L   P  +++G K  ++  + ++ R  G      LE+ I
Sbjct: 578 DHKDEKVGYKIRQAQLEKVPYMLVLGEKEAAEGAITVRSRDKGDLGAAVLEDFI 631


>gi|87198229|ref|YP_495486.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123749972|sp|Q2GBX1|SYT_NOVAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87133910|gb|ABD24652.1| Ser-tRNA(Thr) hydrolase [Novosphingobium aromaticivorans DSM 12444]
          Length = 664

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 158/435 (36%), Gaps = 78/435 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G   W P G      + A +R   +  G  E+  P +  A  W +SG +  Y +
Sbjct: 263 LQQEAHGSVFWHPKGYLIWRELEAYMRRAIDGAGYREVKTPQVMDARQWEQSGHWGKYRE 322

Query: 92  EMLRLADR------------NDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D             ND   M   P +      IFR  IKSYR LP   Y+    
Sbjct: 323 NMFVIPDEVPNVDDEGPIVSNDADWMALKPMNCPAHVLIFRQGIKSYRELPLRLYENGCC 382

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLK---SI 193
            R+E      G+MR R+F   DA+ F    E    S  + F     RI+   G      +
Sbjct: 383 HRNEPHGALHGLMRVRQFTQDDAHIF--CREDQIVSEVQAFCELADRIYKHFGFTYSIKL 440

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +R E                     + F +++  D    +E    D ++      E++ 
Sbjct: 441 ALRPE---------------------KRFGTEEMWD---KAERELRDAVVRAGLATEEYG 476

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIE------VGHIFYFGTKYS---LP--MSATF 302
                         ++ LP      A  +E      +G  +  GT  S   LP  + A++
Sbjct: 477 --------------WEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQSDRVLPERLDASY 522

Query: 303 KGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQV 360
            G DG+ H   M    I G+      ++     G+  +W   +AP +  +  I +  D  
Sbjct: 523 IGEDGEKHRPVMLHRAIFGSYERFIGILIEHFAGRLPVW---LAPVQAVVATIVSDADDY 579

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            RDA  K+ A   +   D+      E+I  +     L   P  ++VG +   +  V I+ 
Sbjct: 580 ARDALAKLKAAGIRADTDL----RNEKINYKVREHSLQKVPYLLVVGKREAEEGTVAIRI 635

Query: 421 RLTGIREDMSLEEVI 435
                ++ M L+E I
Sbjct: 636 LGEQHQKVMPLDEAI 650


>gi|262382112|ref|ZP_06075250.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298375301|ref|ZP_06985258.1| threonine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|262297289|gb|EEY85219.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298267801|gb|EFI09457.1| threonine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 651

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 152/413 (36%), Gaps = 63/413 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  + 
Sbjct: 261 KGLPMWLPKGTALRLRLQEFLRRIQARYNYQEVMCPPIGNKLLYITSGHYAKYGKDSFQP 320

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      I+++  +SY++LP    +     R E      G+ R R
Sbjct: 321 IHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  +  +      +F  +  ++   +              I L
Sbjct: 381 SFTQDDAHIF-CRPDQVKQEFLNVMDIISIVFKTMNFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK   +  E
Sbjct: 426 RDKVNREKYIGSD-----------------------ENWEKAEQAIVEACEEKGLKAKIE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + GAD + H  V +     
Sbjct: 463 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMIHRAPF 522

Query: 320 GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           G+M R VA +IE +  GK  +W   + P ++ ++ I    +   D   +I   L      
Sbjct: 523 GSMERFVAVLIEHTA-GKFPLW---LTPEQVCIMPI---SEKFNDYAWQIARELGNQEIR 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              DD  E+IG +    +L   P  +IVG K   + +V ++ +  G +  M +
Sbjct: 576 AIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENGEVSVRKQGEGDKGSMKI 628


>gi|86608959|ref|YP_477721.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557501|gb|ABD02458.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 603

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M  + 
Sbjct: 223 GLPLWTPKGTTLRWVLEDFLKQEQLKRGYLPVVTPHIARVDLFKISGHWQKYREDMFPMM 282

Query: 98  DRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             N++A       +  P +      I++S ++SYR+LP  + +    +R E      G+ 
Sbjct: 283 AENEQARAAEQGFVMKPMNCPFHIQIYKSELRSYRDLPLRYAEFGTVYRYEQSGELGGLT 342

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F + DA+ F + P+  +  + K+    L +F +L LK    R
Sbjct: 343 RVRGFTVDDAHLF-VRPDQLEEEFLKVVDLILVVFDKLKLKDFRAR 387


>gi|260575744|ref|ZP_05843741.1| threonyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259022142|gb|EEW25441.1| threonyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 648

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 157/423 (37%), Gaps = 56/423 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    +   +R  Q   G  E+  P +    LW  SG +++Y +
Sbjct: 260 LQEEAPGMVFWHPNGWQVWRTLEDYMRRRQREAGYREIRTPQVVDRVLWERSGHWEAYRE 319

Query: 92  EMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       +  +     P +      ++   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEGAKEKRINALKPMNCPCHVQVYNQGLKSYRDLPLRLAEFGACHRYESSGS 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   DA+ F    E    S    F+  L  ++H LG +S  ++  + P   
Sbjct: 380 MHGLMRVRGFTQDDAHIF--CTEAQIESECAAFIELLSSVYHDLGFESFDIKLSTRPEVR 437

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IG D   + +  A     +       +D   P E                  A Y    D
Sbjct: 438 IGTDEDWDRVETALENAIKKVGRSYVID---PGEG-----------------AFYGPKLD 477

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI 319
               KL D++        R  + G    F    +LP  + A + G DG  H   M    I
Sbjct: 478 F---KLTDAI-------GRQWQCG---TFQVDPNLPSRLGAEYIGEDGARHRPFMLHRAI 524

Query: 320 -GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G+      ++  ++ GK   W   +AP ++ +  I +          ++ A L K G  
Sbjct: 525 LGSFERFLGILIENYAGKLPFW---LAPRQVVVAGIVSDADAY---VHEVVAELRKAGVR 578

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINY 437
              D   E+I  +     +   P+ + +G K V +  V ++ RL   R D  SL  ++  
Sbjct: 579 AEADVRNEKINYKVREHSVGKVPVILAIGMKEVEERSVSVR-RLGETRTDSESLTGIVAT 637

Query: 438 ASH 440
            +H
Sbjct: 638 LAH 640


>gi|159028099|emb|CAO87176.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 618

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 157/415 (37%), Gaps = 67/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+     G   +  P L + DLW  SG +D Y   M    
Sbjct: 241 GLVFWHPRGATMRYLIEDYWRQAHLEAGYQFLYTPHLANLDLWKTSGHWDFYRDNMFEAI 300

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   ++    P +       +++ + SYR  P  + ++   +R E      G+MR R F 
Sbjct: 301 ELEQQSYQIKPMNCPFHVLTYQNDLHSYREFPLRWAELGTVYRYERSGVLHGLMRVRGFT 360

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L PE                              +  I G L+    +L+D 
Sbjct: 361 QDDAHIFCL-PEQI----------------------------AAEILGVLNLTEKILSDF 391

Query: 217 GET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           G T  Q+  S        PS++   D +         W    AA  +  N K +D + + 
Sbjct: 392 GFTNYQINLSTR------PSKSVGSDSV---------WELATAALIEALNAKKWDYIEDQ 436

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
              +  G +        +G ++   T    ++LP      +   DG ++  + +     G
Sbjct: 437 GGGAFYGPKIDIKIQDAIGRMWQCSTIQVDFNLPERFDMQYVARDGSRERPIMIHRAIFG 496

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++  ++ G   +W   +AP ++ L+ +    Q       ++  +L + G  V 
Sbjct: 497 SLERFFGILIENYAGDFPLW---LAPIQVRLLPVSDEQQ---HYALEVAVQLKQAGYRVE 550

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D  GE++G Q    +L   P+  ++G + VS   + I+ R  G    M+L +++
Sbjct: 551 IDKSGERLGKQIRTGELEKIPVLAVIGKREVSSKTLSIRTRQGGDLGSMTLADLL 605


>gi|118358180|ref|XP_001012338.1| glycyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|89294105|gb|EAR92093.1| glycyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 635

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 311 YVQMGSYGIGAMRVVAAVIESS---HDGKGIIW--PDSVAPFKISLINIKAHDQVCRDAC 365
           YV   S+G+G  R+ +A++E S    D K   +  P  ++P K S++ + +H++   DA 
Sbjct: 478 YVIEPSFGVG--RIFSAILEHSFRMRDEKRTFFHLPPKISPIKCSILPVISHEKY-NDAI 534

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L+KVG     DD G  IG ++A  D LG P  + + +  + D  V ++  LT  
Sbjct: 535 HKLKVGLTKVGVSSKVDDTGHAIGRRYARTDELGIPFGITIDNDTLVDDSVTLREILTTK 594

Query: 426 REDMSLEEVINYAS 439
           +  + + +V    S
Sbjct: 595 QIRIPINDVFRVVS 608


>gi|330813582|ref|YP_004357821.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486677|gb|AEA81082.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 638

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/436 (19%), Positives = 176/436 (40%), Gaps = 50/436 (11%)

Query: 14  NPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N  +AE   H+ + +T  + H  + S G   W   G      +   +R++Q   G  E++
Sbjct: 235 NLEEAEKRDHRKLGKTMDLFHFQEESPGAVFWHQKGWALFQTLVDFMRQKQLEAGYQEVN 294

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M   +  +++     P +      I+   +KSY++LP 
Sbjct: 295 TPEIIDRVLWEKSGHWEKFQEYMYTTSTPDERTFAIKPMNCPGHCQIYNQGLKSYKDLPL 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +     R E      G+MR R F   DA+ F    + ++ S  K+    L I+   G
Sbjct: 355 KLSEFGKVHRYEPSGSLHGLMRVRSFTQDDAHIFCTEDQITEESV-KVTKLILDIYKAFG 413

Query: 190 LKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            ++I ++    P   +G D       + D  E  +  +       I +   D+    ++N
Sbjct: 414 FENITLKYADRPAKRVGDD------SVWDQSEKALLEA-------IKASKVDY----TIN 456

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG 304
                +  P           L D++  + +     +++          +LP  + AT+  
Sbjct: 457 KGEGAFYGPKIEFV------LRDAIGRDWQCGTLQVDL----------NLPGRLDATYVD 500

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK    V +     G++     ++   + GK  +W   ++P +++++ I        D
Sbjct: 501 KDGKKKTPVMLHRALFGSLERFTGILIEHYAGKLPLW---LSPVQVAILPINDEHH---D 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I  +L K+      D   E+I  +     +   P+ +I GSK V +  + ++    
Sbjct: 555 YAKEILNQLEKISIRPIIDLRNEKINYKIREHSVGKIPILMICGSKEVQNKTITLRRLGQ 614

Query: 424 GIREDMSLEEVINYAS 439
             ++  SLE++I+  S
Sbjct: 615 EDQQTESLEKIISSLS 630


>gi|258404181|ref|YP_003196923.1| threonyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796408|gb|ACV67345.1| threonyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 649

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 153/392 (39%), Gaps = 51/392 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  R G   +  PTL   +LW  SG YD+Y +E +   
Sbjct: 261 GMPLWHPKGALIRTILEDFSRKEHLRRGYQLVQGPTLLRQELWQRSGHYDNY-RENMYFT 319

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +D+A    P +      I+ + I+SYR+LP  ++++    R E      G++R R+F 
Sbjct: 320 EIDDQAYGIKPMNCLAHMLIYNTKIRSYRDLPIRYFELGTVHRHEKSGVLHGLLRVRQFT 379

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+     P+  +   +K+ V +++    LGL                  ++ V   T
Sbjct: 380 QDDAHIL-CRPDQLQDEISKI-VRFVQDV--LGL---------------FGFDYEVEIST 420

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   S D  D    +     D++     I     A Y    D+   KL D+L    +
Sbjct: 421 RPEKSIGSDDAWDRATDALTKALDELGVEYGICAGDGAFYGPKIDM---KLKDALGRKWQ 477

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
            +               ++LP      + G DG+ H  V +    +GA+     V+   +
Sbjct: 478 CTT----------IQCDFTLPERFDLVYVGQDGQRHRPVMLHRAMLGAIERFLGVLLEHY 527

Query: 334 DGKGIIWPDSVAPFKISLINIK----AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            G    W   + P +  ++NI      + Q C D       +L   G     D   E++G
Sbjct: 528 AGALPTW---LMPEQARVLNITDDHAEYAQQCVD-------QLRAAGIRAEADLRNEKLG 577

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   A +   P  ++VG + V+ S   ++ R
Sbjct: 578 YKVREAQMEKIPYVLVVGEQEVATSGANLRLR 609


>gi|313892956|ref|ZP_07826533.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442309|gb|EFR60724.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 636

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 157/395 (39%), Gaps = 47/395 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I +   G   +LP G    + +    RE  +     E+  P + +  LW  SG +  Y 
Sbjct: 256 VIKEEGPGFPFFLPKGMALRNELENFWREVHHEFDYEEIRTPIILNKQLWETSGHWFHY- 314

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +     +D+     P +      ++++ + SYR+ P  + ++ L  R EL     G+
Sbjct: 315 RENMYTTIIDDEEYAIKPMNCPGGILVYQNEMHSYRDFPLRYAELGLVHRHELSGALHGL 374

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSH 208
            R R F   DA+ F + P+  +    K+   + RI+ + GLK  + +  +     GD   
Sbjct: 375 FRVRAFTQDDAHVF-MLPDQMQSELMKVIELFDRIYSQFGLKYHVELSTKPDNAMGD--- 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + I  A T   +       + + I   +  F                Y    D H E   
Sbjct: 431 DAIWEAATEALRNAIEAKGIPYVINPGDGAF----------------YGPKLDYHIE--- 471

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           DSL        R  + G I       +LP      + G DG+ H  + +     G+M   
Sbjct: 472 DSL-------GRTWQCGTI---QLDMNLPERFQIDYVGEDGQKHRPIMIHRACFGSMERF 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             ++   + G    +P  +AP ++ ++ I + H +  ++  ++++    +V      DD 
Sbjct: 522 IGILTEHYAGA---FPTWMAPVQVKILPISEKHVEYAKELAKQMHRDYVRVEV----DDR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            E+IG +   A +   P  ++VG K V +  V ++
Sbjct: 575 SEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVR 609


>gi|289450634|ref|YP_003474779.1| proline--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185181|gb|ADC91606.1| proline--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 483

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG  ++      F   + K  Y    S+G+ + RV+ A+I    D  G+
Sbjct: 225 GKALQSGTSHYFGDGFARAFGIQFSDRENKLQYCHETSWGM-STRVIGAMIMVHSDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVAD 396
           + P  VAP +I LI I  H      A   +  RL K   G  V  D   +  G +F+  +
Sbjct: 284 VLPPRVAPVQIMLIPIAMHKDGVLPAVFALRDRLQKASYGFRVKVDASDKMPGWKFSEQE 343

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G PL++ +G + +    V    R TG +  + LE +
Sbjct: 344 MRGIPLRLEMGPRDIEQGSVVAVRRDTGAKTILPLEGI 381


>gi|283785057|ref|YP_003364922.1| threonyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282948511|emb|CBG88100.1| threonyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 642

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVI 625


>gi|259046393|ref|ZP_05736794.1| proline--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036938|gb|EEW38193.1| proline--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 482

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++      +   + +  Y    S+G+ + R++ ++I +  D KG+
Sbjct: 219 GKAVQAGTSHYMGTKFAEAFDIKYLTKENEHVYAHTTSWGV-STRLIGSLIMTHGDEKGL 277

Query: 339 IWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  VAP ++ LI +     +    +  E++   L   G  V  DD     G +F   +
Sbjct: 278 VLPPKVAPTQVVLIPVGPWKKNPAILEKLEELQKELKAAGLRVKIDDTDNSPGFKFNEWE 337

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L G P+++  G + + +++V  K R
Sbjct: 338 LRGVPMRIECGPRDLENNQVMTKMR 362



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   F + I SYR+LP+   Q    FR E +     +R+ EFL ++ ++     
Sbjct: 108 PTSETMIGTAFSNWINSYRDLPYEINQWANVFRWE-KKTLPFLRTSEFLWQEGHTAHADE 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           E ++    KM   Y  +    G+ ++P+
Sbjct: 167 EDARRRTMKMLEVYKEVVE--GVLAVPV 192


>gi|328855773|gb|EGG04898.1| hypothetical protein MELLADRAFT_37217 [Melampsora larici-populina
           98AG31]
          Length = 687

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 2/135 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   WLP G +  + +   ++ E  + G  E+  P + ++ LW  SG +++Y + 
Sbjct: 297 HEMSPGSCFWLPHGTRIYNTLVEFLKSEYRKRGYDEVISPNMYNSKLWNTSGHWENYSEN 356

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M +L +   +     P +      IF S  +SYR LP       +  R+E      G+ R
Sbjct: 357 MFKL-EIEKETFALKPMNCPGHCLIFGSKDRSYRELPLRMADFGVVHRNEASGALSGLTR 415

Query: 152 SREFLMKDAYSFDLT 166
            R F   DA+ F  T
Sbjct: 416 VRRFCQDDAHHFCTT 430


>gi|167044004|gb|ABZ08690.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG3K8]
          Length = 479

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 122/319 (38%), Gaps = 66/319 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +   +F   IKS+R+LP          R E++     +R+ EFL ++ +    T 
Sbjct: 111 PTSETLAYSLFSKWIKSWRDLPLKMNFWNSALRAEIKGTKPFLRTSEFLWQEGH----TV 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +K    K     L ++ +                  +  E  V   TG+         
Sbjct: 167 HATKDEAEKEVADILELYKKT-----------------IEEELAVPVITGKK-------- 201

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                 SE   F                      V+ + L   +P+ K      +++G  
Sbjct: 202 ------SEKDKF-------------------VGAVYTDTLESLMPDGK-----ALQMGTS 231

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  +S P    +   +  + +    S+G+ + R++  +I +  D KG++ P  VAP 
Sbjct: 232 HFLGQNFSKPFDVKYLDENNVEAFAWQTSWGV-SWRLIGGMIMTHGDDKGLVLPPKVAPI 290

Query: 348 KISLINI----KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPL 402
           ++ +I I       + V + AC+ I   LS     V  DD      G +F   ++ G P+
Sbjct: 291 QVVIIPIYYSNDEKENVLQTACQ-IKDSLSNNDIRVHLDDREHLTPGFKFNDWEMKGIPI 349

Query: 403 QVIVGSKFVSDSKVEIKHR 421
           ++ +G K ++ ++V +  R
Sbjct: 350 RIEIGPKDIAKNQVVLVRR 368


>gi|172036410|ref|YP_001802911.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171697864|gb|ACB50845.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 666

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 145/397 (36%), Gaps = 53/397 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R      G   +  P + + DLW  SG +D Y + M    
Sbjct: 289 GLVFWHPRGAMMRYLIEDYWRNAHLEDGYQFLYTPHVANLDLWKTSGHWDFYRENMFEAM 348

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
               +     P +       ++  + SYR  P  + ++   +R E      G+MR R F 
Sbjct: 349 AVEHQTYQIKPMNCPFHVLTYKDDLHSYREFPLKWAELGTVYRYEKSGVLHGLMRVRGFT 408

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L PE        +     +I    G     +   + P               
Sbjct: 409 QDDAHIFCL-PEQIADEILGVLNLTEKILSDFGFTDYEVNLSTRP-----------EKSV 456

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT--------APYAATSDVHNEKLF 268
           G  QV+         + +E      I +LN+  +QW         A Y    D+   K+ 
Sbjct: 457 GSDQVW--------QLATEAL----IKALNN--KQWNYLEDRGGGAFYGPKIDI---KIK 499

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           D++    + S   ++      FG +Y          ADG      M    I G++     
Sbjct: 500 DAIGRLWQCSTIQVDFNLPERFGMEYV--------AADGSRQQPIMIHRAIFGSLERFFG 551

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++  ++ G   +W   +AP ++ L+ +    Q   D  + +  RL K G  V  D  GE+
Sbjct: 552 ILIENYAGDFPLW---LAPIQLRLLPVSDEQQ---DYAKTVAIRLKKAGYRVEVDTSGER 605

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G Q  +++L   P+  IVG + V    + I+ R  G
Sbjct: 606 LGKQIRLSELEKIPVVAIVGKREVESQTLSIRTRQGG 642


>gi|94676542|ref|YP_588910.1| threonyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123081480|sp|Q1LT04|SYT_BAUCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94219692|gb|ABF13851.1| threonyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 642

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 156/430 (36%), Gaps = 61/430 (14%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  LQE   RD      +L L    I + + G+  W   G      +   IR +   
Sbjct: 230 KCYLQSLQEVKKRDHRKIGQQLDLYH--IQEEAPGMVFWHVDGWIIFRELETFIRSKLQT 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G + +Y + +   +  N +  I  P +      IF   I 
Sbjct: 288 YKYQEVKSPVMIDRTLWEQTGHWSNYAEHIFTTSSENREYCI-KPMNCPGHVQIFNQQIN 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R+E      G+MR R F   DA+ F  T E      N       
Sbjct: 347 SYRDLPLRMAEFGSCYRNEPSGSLHGLMRVRNFTQDDAHIF-CTEEQVCDEINNNIKMLY 405

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++H  G K I +   + P   IG D       + D  E                   D 
Sbjct: 406 EVYHTFGFKKILVNLSTRPAHRIGND------KIWDKAE------------------QDL 441

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNE-KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              ++ N I+ ++     A      E  L DS         R  + G I      +SLP 
Sbjct: 442 ATTLTNNGILFKYNVGAGAFYGPKIEFTLLDSFD-------RAWQCGTI---QLDFSLP- 490

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------WPDSVAPFKISL 351
                 +  K  Y+   +  +  + +  A++ S     GI+       +P  +AP ++ L
Sbjct: 491 ------SRLKAFYINKNNQRLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPTQVVL 544

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI  +     +   ++  +LS        D   E+IG +     L   P  +I G + +
Sbjct: 545 MNISDNQS---NYVIQLMQKLSTANIRAKIDLRNEKIGFKIREHTLRRVPYMLICGDQEI 601

Query: 412 SDSKVEIKHR 421
              KV I+ R
Sbjct: 602 KMGKVTIRTR 611


>gi|301310685|ref|ZP_07216624.1| threonine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300832259|gb|EFK62890.1| threonine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 649

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 152/413 (36%), Gaps = 63/413 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G      +   +R  Q R    E+  P + +  L++ SG Y  YGK+  + 
Sbjct: 261 KGLPMWLPKGTALRLRLQEFLRRIQARYNYQEVMCPPIGNKLLYITSGHYAKYGKDSFQP 320

Query: 97  ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               ++   Y   P +      I+++  +SY++LP    +     R E      G+ R R
Sbjct: 321 IHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F   P+  K  +  +      +F  +  ++   +              I L
Sbjct: 381 SFTQDDAHIF-CRPDQVKQEFLNVMDIISIVFKTMNFENFEAQ--------------ISL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   EK   +  E
Sbjct: 426 RDKVNREKYIGSD-----------------------ENWEKAEQAIVEACEEKGLKAKIE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y+LP      + GAD + H  V +     
Sbjct: 463 YGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQKHRPVMIHRAPF 522

Query: 320 GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           G+M R VA +IE +  GK  +W   + P ++ ++ I    +   D   +I   L      
Sbjct: 523 GSMERFVAVLIEHTA-GKFPLW---LTPEQVCIMPI---SEKFNDYAWQIARELGNQEIR 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              DD  E+IG +    +L   P  +IVG K   + +V ++ +  G +  M +
Sbjct: 576 AIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENGEVSVRKQGEGDKGSMKI 628


>gi|225573951|ref|ZP_03782596.1| hypothetical protein RUMHYD_02045 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038789|gb|EEG49035.1| hypothetical protein RUMHYD_02045 [Blautia hydrogenotrophica DSM
           10507]
          Length = 479

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 126/329 (38%), Gaps = 65/329 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D +   I S+R+LP  + Q    +++    RP    +RSREFL ++ ++   
Sbjct: 114 PTSETLFCDFYARDIHSHRDLPKVYNQWCSVVRWEKTTRP---FLRSREFLWQEGHTAHA 170

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E ++    +M   Y                                AD      FC +
Sbjct: 171 TAEEAEERTIQMLNVY--------------------------------AD------FCEE 192

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +     I    TD +             A Y   S +H+ K   S              G
Sbjct: 193 ELAIPVIKGRKTDKEKFAGAE-------ATYTIESLMHDGKALQS--------------G 231

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               FG  ++      +   D    YV   S+G+   R++ A+I    D  G++ P  +A
Sbjct: 232 TSHNFGDGFAKAFGIQYADRDNTLKYVHQTSWGM-TTRMIGAIIMVHGDNSGLVLPPRIA 290

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +  +I I+   +   +  +++ A + K G  V  DD  +  G +F+  ++ G P+++ 
Sbjct: 291 PVQAMIIPIQQKKEGVLEKADEMMAAIKKAGIRVKVDDSDKSPGWKFSEQEMRGIPVRIE 350

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G K + + +  I  R T  +  +S E++
Sbjct: 351 CGPKDIENGQAVIVRRDTREKIVVSFEDL 379


>gi|325957298|ref|YP_004292710.1| threonyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325333863|gb|ADZ07771.1| threonyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327184028|gb|AEA32475.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 644

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 160/405 (39%), Gaps = 39/405 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I + +   G   +  P L + D +  SG +  Y  +M    
Sbjct: 260 GLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPM 319

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR+LP    ++ +  R E      G+ R RE 
Sbjct: 320 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 380 TLNDGHTF-VALDQVQDEFAKILKLIMDVYKDFDITDYYFR---------LSYR-----D 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ + + D M            D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 425 PKNTEKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 481

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 482 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 533

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N  AH +      EK+   L+K G     D+  E++G +
Sbjct: 534 KGAFPTW---LAPIQAEIIPVNNDAHGEY----AEKVRQELAKRGFRAEVDNRNEKMGYK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +     P  +++G + + +  V ++   T      SL++ I 
Sbjct: 587 IRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLDDFIK 631


>gi|326201674|ref|ZP_08191545.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988274|gb|EGD49099.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 635

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   ++P G    + +    R E  + G  E+  P + + +LW+ SG +D+Y KE +   
Sbjct: 261 GFPFFMPKGMVLRNLLEDFWRSEHKKAGYQEIKTPVILNKELWLRSGHWDTY-KENMYTV 319

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D +++     P +      +F+  + SYR+LP    ++ L  R EL     G+MR R F 
Sbjct: 320 DIDEQEYAIKPMNCPGGILVFKRKLHSYRDLPQRMGELGLVHRHELSGALHGLMRVRCFT 379

Query: 157 MKDAYSFDLTPE 168
             DA+ F +TPE
Sbjct: 380 QDDAHIF-MTPE 390


>gi|114570943|ref|YP_757623.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Maricaulis
           maris MCS10]
 gi|122315357|sp|Q0AM08|SYT_MARMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114341405|gb|ABI66685.1| Ser-tRNA(Thr) hydrolase [Maricaulis maris MCS10]
          Length = 644

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 5/152 (3%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  +  + H  + ++G   W P G +    V + +R      G +E+  P 
Sbjct: 238 EAEKRDHRKLGKQMELFHFQEEAQGQVFWHPNGWRLYRTVTSYMRRRLEAAGYVEIRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L     W  SG +D Y + M +   D+ +K +   P +      +F    KSYR+LP   
Sbjct: 298 LMDRKFWEASGHWDKYRENMFISSIDQEEKVLAVKPMNCPCHVQVFNQGQKSYRDLPLRM 357

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            +     R E      G+MR R F+  DA+ F
Sbjct: 358 AEFGSCHRYEPSGSLHGLMRVRGFVQDDAHIF 389


>gi|94264275|ref|ZP_01288069.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|94270245|ref|ZP_01291687.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93450880|gb|EAT01895.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93455320|gb|EAT05527.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
          Length = 641

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/420 (20%), Positives = 152/420 (36%), Gaps = 39/420 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      +L L T +  Q   G+  W P G      +    R++  +
Sbjct: 231 KQYLAQLEEAKRRDHRKLGKELELFT-IQEQIGPGLILWQPKGALLRRLIEDYWRQQHYQ 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   +LW  SG  D YG  M    D  D      P +      ++++  +
Sbjct: 290 HGYDLLYTPHIARRELWQTSGHLDFYGDNMFAGMDIEDVQYQLKPMNCPFHIALYKTRKR 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR  P  + ++   +R E      G+MR R F   DA+ F   PE  +    ++    L
Sbjct: 350 SYREFPLRWCELGTVYRFEKTGALHGLMRVRGFTQDDAHIF-CRPEQLEDEIYRILDFNL 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G     +   + P     S E    A          K       P E   +   
Sbjct: 409 HVLKAFGFSDYEIYLSTRPEKYVGSDEHWQQATEALKLALEHKGLAYSVDPGEGVFYGPK 468

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I +                    K+ D L    + S   ++    F    ++ L     +
Sbjct: 469 IDI--------------------KIKDVLGRAWQCSTIQVD----FNLPERFKL----GY 500

Query: 303 KGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D  +H  + +    +G++     V+   + G   +W   +AP +  ++NI       
Sbjct: 501 TGEDSGEHRPIMIHRALMGSLERFFGVLIEHYAGAFPLW---LAPVQARILNIT---DAQ 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   K+Y +L + G  V  D+  E++  +   A L   P  ++VG +  +D  + ++ R
Sbjct: 555 LDYVGKVYEQLRRAGVRVEKDERNEKLNYKIREAQLQKIPYMLVVGDQEAADGTITVRQR 614


>gi|308186646|ref|YP_003930777.1| Threonyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308057156|gb|ADO09328.1| Threonyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 642

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 148/400 (37%), Gaps = 54/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHVF-CTEEQVRDEVNSCIRMVYDMYSTFGFEKIVVKLSTRPEKRIGTD-- 431

Query: 208 HEFIVLADTGETQVFCS--KDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  +  ++ ++F   P E   +   I                     
Sbjct: 432 ----EMWDRAEEDLAAALNENNIEFEFQPGEGAFYGPKIEFT------------------ 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L+D L        R  + G +      +SLP  + AT+ G +       M    I G+
Sbjct: 470 --LYDCLD-------RAWQCGTV---QLDFSLPKRLEATYVGENNDRQTPVMIHRAILGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP ++ ++NI        +  E +  +L   G  V  
Sbjct: 518 MERFIGILTEEFAG---FFPTWLAPLQVVVMNITDGQA---EYVESLTRKLQNAGIRVKA 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 572 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611


>gi|297617667|ref|YP_003702826.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145504|gb|ADI02261.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 636

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 154/402 (38%), Gaps = 41/402 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRL 96
           G   +LP G    + +    R+E  + G  E+  P + +  LW +SG ++ Y + M    
Sbjct: 261 GFPFFLPKGMIIRNELENFWRQEHVKAGYQEIKTPIILNRSLWEKSGHWEHYRENMYFTT 320

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            D  D A+   P +      +++ ++ SYR LP    ++ L  R E      G+MR R F
Sbjct: 321 IDEEDYAV--KPMNCPGGILVYKQNLHSYRELPIRLGELGLVHRHEKSGVLHGLMRVRAF 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ F L  + ++    K  +  +  F+RL   S  +   + P     S E    A 
Sbjct: 379 TQDDAHIFMLPSQITQEI--KGVIDMVDHFYRLFGFSYHVELSTKPEKAMGSDEIWEKA- 435

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG  +    +  M++ I   +  F                Y    D H   L DSL    
Sbjct: 436 TGALRQALEEKGMEYKINEGDGAF----------------YGPKIDFH---LRDSLDRTW 476

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHD 334
           +     ++    F    K+ L    T+ G DG+ H   M    I G++     ++     
Sbjct: 477 QCGTIQLD----FLMPEKFDL----TYVGEDGEKHRPVMIHRVIYGSLERFIGILTEHFG 528

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G    +P  +AP ++ +I I            ++ A   + G  V  D   E++G +   
Sbjct: 529 GA---FPTWLAPVQVRIIPITERHH---GYAVELEAGFREAGLRVESDLRSEKVGYKIRE 582

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             L   P  ++VG K   +  V ++ R  G      + E +N
Sbjct: 583 GQLQRIPYLLVVGDKETENKTVSVRKRKEGDLGAQPVAEFLN 624


>gi|229826593|ref|ZP_04452662.1| hypothetical protein GCWU000182_01968 [Abiotrophia defectiva ATCC
           49176]
 gi|229789463|gb|EEP25577.1| hypothetical protein GCWU000182_01968 [Abiotrophia defectiva ATCC
           49176]
          Length = 507

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++     TF   D    Y    S+G+ + R++ A+I    D  G+
Sbjct: 254 GKALQSGTSHNFGDGFARAYDVTFTDKDNSIQYAHQTSWGV-STRMIGAIIMVHGDDNGL 312

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ +I I  + +   +   ++  RLS     V  DD  +  G +FA  ++ 
Sbjct: 313 VLPPRIAPTQVMIIPIMQNKEGVLEKANELKNRLS-ADFRVKLDDSDKTPGFKFADQEMR 371

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K +  +K  +  R    + ++SL+E+
Sbjct: 372 GIPVRVEIGPKDIEANKCIVVRRDNREKTEVSLDEL 407



 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  D +   I+SYR+LP  + Q    +++  E RP    +R+REFL ++ ++   
Sbjct: 143 PTSETLFCDFYSKDIRSYRDLPKVYNQWCSVVRWEKETRP---FLRTREFLWQEGHTAHA 199

Query: 166 TPEGSKHSYNKMFVSYLRIFH 186
           T E ++    +M   Y+  F 
Sbjct: 200 TEEEAQARTIQMLNVYVDFFE 220


>gi|123965897|ref|YP_001010978.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|166225479|sp|A2BVR0|SYT_PROM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123200263|gb|ABM71871.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 638

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 142/382 (37%), Gaps = 42/382 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G+  W P G      +   IRE   +   +E+  P      LW +SG ++ +  
Sbjct: 255 IQEESPGMIFWHPNGWIIYQILEKYIREILRKNEYLEIKTPQAVDKSLWEKSGHWEKFRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M   A  N    I  P +      +F   +KSY++LP    +     R+E      G+M
Sbjct: 315 DMFTTASENRTYAI-KPMNCPCHIQVFNQGLKSYKDLPLRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   +        +++  G   I ++  + P     S + 
Sbjct: 374 RVRNFTQDDAHIF-CTEEQIQEEVSTFIDLVFEVYNTFGFDEIIIKLSTRPEKRVGSEDI 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              ++   T+   +K+      P E   +   I  +                    L D 
Sbjct: 433 WDKSEEALTEALNNKNLKWELQPGEGAFYGPKIEFS--------------------LKDC 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L  N+      I+V         +S+P  + ATF   +  K   V +    +G+      
Sbjct: 473 L--NRIWQCGTIQVD--------FSMPVRLDATFVDINNEKKSPVMLHRAILGSFERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   ++ K  IW   +AP +I L++I   +      C +    L+  G     D   E+
Sbjct: 523 ILIEQYEAKFPIW---LAPTQIILLSITERNI---KKCIEFNNLLNTKGYRSKIDIRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSK 409
           IG +   + L   PL  IVG K
Sbjct: 577 IGYKIRESTLARIPLIGIVGDK 598


>gi|71083144|ref|YP_265863.1| threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123734387|sp|Q4FNH9|SYT_PELUB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71062257|gb|AAZ21260.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 638

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL     + H  + S G   W   G K    + A +R  Q + G  E++ P 
Sbjct: 238 EAEKRDHRKLGKEMDLFHFREESPGSVFWHEKGWKLFQKLVAYMRARQEKAGYKEVNTPE 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG ++ YG+ M      ++K     P +      +F   +KSYR+LP    
Sbjct: 298 ILDRSLWEKSGHWEKYGEHMYTSQTPDEKIFAIKPMNCPGHVQVFNQGLKSYRDLPLRIS 357

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +     R E      G++R R F   DA+ F
Sbjct: 358 EFGKVHRYEPSGALHGLLRVRAFTQDDAHIF 388


>gi|83719712|ref|YP_443111.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167620276|ref|ZP_02388907.1| threonyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|123767616|sp|Q2SVD8|SYT_BURTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83653537|gb|ABC37600.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 635

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 150/396 (37%), Gaps = 46/396 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W P G      V   +R   +  G +E+  P +    LW  SG + +Y +
Sbjct: 255 IQEEAPGMVFWHPKGWTLWQRVEQYMRRRLDAAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G+MR R F+  DA+ F    + +    ++NK+ +S   ++   G   I ++    P    
Sbjct: 371 GLMRVRGFVQDDAHIFCTEDQINSEAIAFNKLAMS---VYEDFGFDRIDIKLSLRPEQRM 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S E    A+ G      +       +P E                  A Y    + H  
Sbjct: 428 GSDETWDHAEEGLRNALKACGLEWEELPGEG-----------------AFYGPKIEYH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D+L  + +     +++      G +Y           + +   V +    +G+M   
Sbjct: 469 -IKDALGRSWQCGTLQLDMMLPERLGAEY-------VAEDNSRRRPVMLHRAIVGSMERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   H G    W   +APF   ++NI A  Q   +  + +   L K G  V  D   
Sbjct: 521 LGILIEHHAGAMPAW---LAPFHAVVLNI-AESQA--EYAQTVVQSLQKQGLRVSADLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+I  +     L   P  ++VG K      V ++ R
Sbjct: 575 EKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610


>gi|257092825|ref|YP_003166466.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045349|gb|ACV34537.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 638

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 16/181 (8%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H+KG   W          V   +R      G  E+  P +    LW  SG + +Y
Sbjct: 261 GMVFWHAKGWTIW--------QEVEQYMRRLLGENGYCEVKTPMIMDRTLWERSGHWQNY 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M   A  N    I  P +      IF   ++SYR+LP    +     R+E      G
Sbjct: 313 AEHMFTTASENRDYAI-KPMNCPGHIQIFNQGLRSYRDLPLRLAEFGSCHRNEPSGALHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGG 204
           +MR R F+  DA+ F    E         F+  L +I+   G   I ++  + P   IG 
Sbjct: 372 IMRVRAFVQDDAHIF--CTEAQVLPETAAFIDLLEKIYADFGFTDILVKLSTRPDKRIGS 429

Query: 205 D 205
           D
Sbjct: 430 D 430



 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKG 337
           +G ++  GT    ++LP  + A + G D   H   M    I G++     ++   + G  
Sbjct: 473 LGRVWQCGTLQLDFALPERLDAHYVGEDNDRHVPVMLHRAILGSLERFIGILIEHYAGAM 532

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            +W   ++P ++ ++NI        D  E++ A L + G     D   E+I  +     L
Sbjct: 533 PLW---LSPMQVVVLNISEKQG---DYAEQVAATLRRAGLRAEADLRNEKITRKIREHSL 586

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              P QV+VG K V+ + V ++ R       MSLE +I
Sbjct: 587 NKLPYQVVVGDKEVAANLVAVRTRGGQDLGQMSLESLI 624


>gi|114047517|ref|YP_738067.1| threonyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123326545|sp|Q0HV45|SYT_SHESR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113888959|gb|ABI43010.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella sp.
           MR-7]
          Length = 642

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 148/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVQAEVSSCIQMVYDTYSTFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   +K+     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRAKNIEFTILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPSRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  E++     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVEEVVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|269115191|ref|YP_003302954.1| Prolyl-tRNA synthetase [Mycoplasma hominis]
 gi|268322816|emb|CAX37551.1| Prolyl-tRNA synthetase [Mycoplasma hominis ATCC 23114]
          Length = 477

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/421 (19%), Positives = 163/421 (38%), Gaps = 79/421 (18%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSY 89
           M +  +KG   + PL     +N+ A +  E  + G   + +P L   + L  E    + +
Sbjct: 28  MAYGATKGCIIFKPLAYSIWENIQAKMDIEFKKRGVQNVYLPLLIPESLLQKEKNHVEGF 87

Query: 90  GKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI--QLKFRDEL 143
             E+  + +   K +       PT E +  D+F++ + SY +LP  + Q    L++    
Sbjct: 88  NPELATVTEVGGKKLAEKFFIRPTSETLFADLFKNEVSSYNDLPIIYNQWVNVLRWEKTT 147

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI- 202
            P    +R+REFL ++ ++         HS ++  + + +  H++  K +     + P+ 
Sbjct: 148 NP---FLRTREFLWQEGHTI--------HSSSEEAIEFAKTMHKV-YKDVIEENLAIPVV 195

Query: 203 -GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            G    HE    AD   T     KD                                   
Sbjct: 196 EGCKTDHEKFAGADITYTLESMMKD----------------------------------- 220

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                             + ++ G   Y G  ++     TFK  + K       S+G   
Sbjct: 221 -----------------GKALQSGTSHYLGQNFTKAFDITFKNNENKLINPYGTSWGT-T 262

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSK-VGCD 378
            R++ A+I +  D +GII P  +A  ++ ++ I     ++V + A E   A L+K +  +
Sbjct: 263 TRLIGALIMTHGDDRGIIIPPKIARTQVDILEIFNSKDERVHKLALELKDALLAKNIVAN 322

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +  D   +  G + A +++ G PL++ +G K + ++ V    R    +   ++ E  N A
Sbjct: 323 I--DSSNKGPGFKAANSEIHGTPLRIEIGPKDIENNSVLFVRRDNLEKITSTIAEAANIA 380

Query: 439 S 439
           S
Sbjct: 381 S 381


>gi|312137261|ref|YP_004004598.1| prolyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224980|gb|ADP77836.1| prolyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 466

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD+L  +     R +++G I   G  +S     TF+  +GK  +     YG+   RV+A+
Sbjct: 205 FDTLMPD----GRTLQIGTIHNLGQNFSKTFDITFETEEGKHEHAYQTCYGVSD-RVIAS 259

Query: 328 VIESSHDGKGIIWPDSVAPFKISLIN--IKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           VI    D KG+  P  +AP +I ++    K  ++   + C+ +  +L +    V  DD  
Sbjct: 260 VISIHGDEKGLCLPPKIAPIQIVIVPIIFKETEEEVLEFCKNVEKKLKEGKLKVHLDDRD 319

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            + G +F   ++ G PL++ +G K +  +KV +  R +G + D+  ++
Sbjct: 320 IRAGRKFYEWEMKGIPLRIEIGPKDIEKNKVVVVRRDSGEKMDVKFDD 367



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 37  KGIYSWLPLG----QKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGK 91
           KG+++WLP G    +K ++ +  ++ E+ +     E+  P L    +L  ES     +  
Sbjct: 25  KGMHAWLPYGFKIRKKIIETLRKLLDEDHD-----EVLFPLLIPEEELMKESIHIKGFED 79

Query: 92  EMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +      +  + +   PT E  M  +F   I+++++LP   YQI   FR E +   
Sbjct: 80  EVYWVTHGGKAKLKRKLALRPTSETAMYPMFSLWIRTHKDLPLKVYQIVNTFRYETKHTR 139

Query: 148 GVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            ++R RE    K+A++   T EG++    K    Y   F  LG+
Sbjct: 140 PLIRIREITTFKEAHTVHKTLEGAEKQVKKAINIYKTFFDSLGI 183


>gi|83816191|ref|YP_446893.1| threonyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757585|gb|ABC45698.1| threonyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 694

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 91/450 (20%), Positives = 161/450 (35%), Gaps = 67/450 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +L L T    Q   G+  WLP G      +  ++++EQ + G   +  P + 
Sbjct: 286 RDHRKLGTELNLFTFDTEQVGPGLPMWLPKGTTLRQTLQEVLQQEQVKQGYKPVCTPHIG 345

Query: 76  SADLWVESGRYDSYGKE----MLRLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLP 129
             DL+  SG Y  Y  +    M+     + +   Y   P +      I+++   SYR+LP
Sbjct: 346 RLDLYRTSGHYPHYEDDQFPPMVTGEGDDGEEDGYLLKPMNCPHHVKIYQNDHHSYRDLP 405

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +    +R E      G+ R R F   DA+ F  TP   K  +  +    L++   L
Sbjct: 406 VRLAEFGTVYRQEQTGELGGLTRVRGFTQDDAHIF-CTPAQVKDEFKSVIDLTLKVLDAL 464

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G +    +              I L D  +T+ +  +D +                    
Sbjct: 465 GFEEFEAQ--------------ISLRDPDDTEKYTGRDAL-------------------- 490

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT---KYSLP 297
              WT       +   E   D+  E    +  G +        +G  +  GT    Y+LP
Sbjct: 491 ---WTRAEQDIREAVAETDLDAYEEPGEAAFYGPKLDFMVEDALGRAWQLGTIQVDYNLP 547

Query: 298 MSATFKGADGKDHY---VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                   D  D     V +     G++ R +  +IE      G  +P  +AP ++ +I 
Sbjct: 548 ERFELTYVDEHDERKRPVMIHRAPFGSLERFIGVLIEHC----GGNFPTWLAPTQVQIIP 603

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +   D V  D  +++ A L      V  D   E +G +   A+    P  ++VG      
Sbjct: 604 V-GDDFV--DYAQEVAATLRAEDVRVEIDTSDETVGYKIREAETQKVPYMLVVGGDEEEA 660

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V ++    G +  +S+++ ++     F 
Sbjct: 661 GTVSVRSHADGPQGTVSVQDFLDRTGPEFE 690


>gi|86131542|ref|ZP_01050140.1| Threonyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85817987|gb|EAQ39155.1| Threonyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 647

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/424 (20%), Positives = 163/424 (38%), Gaps = 45/424 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L T    +  +G+  WLP G    + +   ++  Q +
Sbjct: 229 KQYLELLEEAKKRDHRKLGKELELFT-FSQRVGQGLPLWLPKGAALRERLENFLKAAQKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSH 121
            G   +  P +   +L+  SG Y  YG +  +     ++    +  P +     +I+ S 
Sbjct: 288 QGYEMVVSPHIGQKELYETSGHYAKYGADSFQPIQTPNEGEEFLLKPMNCPHHCEIYNSR 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + K+   
Sbjct: 348 PWSYKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFMKVIDL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG +    +              + L D      +  +D  +  + +EN   +
Sbjct: 407 VLYVFGSLGFEDFTAQ--------------VSLRDPENPDKYIGED--ENWVKAENAILN 450

Query: 241 DIIS--LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
              +  LN +VE   A +            D +   K    R  ++G I      Y+LP 
Sbjct: 451 AAKAKGLNYVVETGEAAFYGPK-------LDFMV--KDALGRSWQLGTI---QVDYNLPE 498

Query: 298 -MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +KG+D + H  V +     G+M    A++     G   +W   + P + +++ + 
Sbjct: 499 RFELQYKGSDNEMHRPVMIHRAPFGSMERFVAILLEHTGGNFPLW---LMPQQATILTL- 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      + +   L         D+ GE +G +   A++   P  +I+G +   D  
Sbjct: 555 --SEKYEKYAQNVLNLLENHEIRALIDNRGETMGKKIREAEMQKLPFMLIIGEQEEKDGT 612

Query: 416 VEIK 419
           + ++
Sbjct: 613 ISVR 616


>gi|319954103|ref|YP_004165370.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Cellulophaga
           algicola DSM 14237]
 gi|319422763|gb|ADV49872.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Cellulophaga
           algicola DSM 14237]
          Length = 646

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/402 (19%), Positives = 149/402 (37%), Gaps = 65/402 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + +   +++ Q + G   +  P +   +L+V SG Y  YG +  + 
Sbjct: 261 QGLPLWLPKGAALRERLEDFLKKAQKKAGYEMVITPHIGQKELYVTSGHYAKYGADSFQP 320

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
               + D+  +  P +     +++     SY++LP  F +    +R E      G+ R R
Sbjct: 321 IKTPKMDEEFLLKPMNCPHHCEVYNFKPHSYKDLPKRFAEFGTVYRYEQSGELHGLTRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TP+     +  +    L +   LG  +   +              + +
Sbjct: 381 GFTQDDAHIF-CTPDQLDEEFKNVIDLSLYVLGSLGFDNFTAQ--------------VSV 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +                          VE W    +A  +   EK  + + E
Sbjct: 426 RDLTKPEKYIGS-----------------------VENWEKAESAIINAATEKGLNFVIE 462

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
           +   +  G +        +G  +  GT    Y+LP     T+KG+D + H  V +     
Sbjct: 463 SGEAAFYGPKLDFMVKDALGRQWQLGTIQVDYNLPERFDLTYKGSDNELHRPVMIHRAPF 522

Query: 320 GAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+M    A++     G   +W  P+      +S    + H++      EK+   L K   
Sbjct: 523 GSMERFIALLLEHTGGNFPLWLIPEQAIILPVS----EKHEKY----AEKVLKSLEKHEI 574

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               D   E +G +   A++   P  +IVG    ++  + ++
Sbjct: 575 RALVDKRNETVGKKIREAEMNKLPFMLIVGENEEAEETISVR 616


>gi|295397484|ref|ZP_06807567.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974284|gb|EFG50028.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 656

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 167/402 (41%), Gaps = 44/402 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 274 GLPFWLPKGATIRRIIERYIIDKEVSLGYEHVYTPIMADVELYKTSGHWDHYHEDMFPPM 333

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D + ++  P +      ++++ I SYR  P    ++ +  R E      G+ R RE 
Sbjct: 334 DMGDGEQLVLRPMNCPHHMMVYKNDIHSYREFPVRIAELGMMHRYEKSGALSGLQRVREM 393

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F + P+  K  + ++     +++    +     R         LS+      D
Sbjct: 394 TLNDAHIF-VRPDQIKEEFTRVIELIKQVYDDFNITDYRFR---------LSYR-----D 438

Query: 216 TGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T  +   D M      +  E  D   +    +I E   A Y    DV   ++  +L 
Sbjct: 439 PNNTDKYFDDDEMWEKAQAMLKEAMDDLGLEYFEAIGE--AAFYGPKLDV---QMKTALG 493

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAM-RVVAAVI 329
             + +S   ++    F    ++ L    T+ G DG+D +  V +    +  M R VA +I
Sbjct: 494 NEETMSTVQLD----FLLPERFDL----TYVGQDGQDTHRPVVIHRGVVSTMERFVAYLI 545

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E     KG  +P  +AP +  LI +  +D+   +  E+I  R+   G  V  D+  E++G
Sbjct: 546 EEY---KG-AFPTWLAPVQAKLIPV--NDEAHGEHVEEIRRRMKAAGMRVEVDNRNEKMG 599

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +   A     P Q++ G   ++++ V +  R  G +E +S+
Sbjct: 600 YKIREAQTQKIPYQLVFGDNEIAENTVTV--RRYGSKETLSM 639


>gi|254498720|ref|ZP_05111436.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
 gi|254352048|gb|EET10867.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
          Length = 648

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 144/396 (36%), Gaps = 54/396 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 268 APGMVFWHPKGWTIYQELERYMRARLADFGYQEIKTPQLVDKVLWEKSGHWANFRDEMF- 326

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + + +++     P +      ++   +KSYR+LP  F +     R E      G+MR R 
Sbjct: 327 VTETDNRHYAVKPMNCPCHIQVYNQGLKSYRDLPLRFSEFGNCHRCEPSGSLHGLMRVRN 386

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
            +  DA+ F  T +  +   + M      ++   G   I  R    P   +GGD   +  
Sbjct: 387 MVQDDAHIF-CTEDQIQSEVDMMLQLVQSVYTDFGFNEIKYRLALRPEKRVGGD---DVW 442

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+    Q    +       P E   +   I  +                    L D L
Sbjct: 443 DKAEAALKQAMKDRTIEWVDAPGEGAFYGPKIECS--------------------LSDCL 482

Query: 272 PENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVV 325
                        G I+  GT    +S+P  + A++   DG      M    I G+    
Sbjct: 483 -------------GRIWQCGTIQVDFSMPGRLDASYIAEDGSKQIPVMLHRAILGSFERF 529

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P + +++ I        D  +++   L K G    +D   
Sbjct: 530 MGILIEHYAGKLPLW---LSPVQAAVLTISEKQN---DYAQQVTQILQKRGLRANFDLRN 583

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  +++G K V   +V ++ R
Sbjct: 584 EKIGFKIREHTLQKVPYLLVIGDKEVESGQVAVRSR 619


>gi|260587370|ref|ZP_05853283.1| proline--tRNA ligase [Blautia hansenii DSM 20583]
 gi|331083671|ref|ZP_08332782.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260542237|gb|EEX22806.1| proline--tRNA ligase [Blautia hansenii DSM 20583]
 gi|330403882|gb|EGG83434.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 479

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   + K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFGIQYTDKENKLQYVHQTSWGM-TTRLIGAIIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +  +I I+   +   D   K+ A+L   G  V  DD  +  G +FA  ++ 
Sbjct: 284 VLPPRIAPVQAVVIPIQQKKEGVLDNAYKLQAQLKAAGIRVKTDDTDKSPGFKFAEQEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++  G K +  ++  +  R T  +  +SL+ +
Sbjct: 344 GIPVRIECGPKDMEANQAVVVRRDTREKITVSLDNL 379


>gi|195941538|ref|ZP_03086920.1| threonyl-tRNA synthetase (thrZ) [Borrelia burgdorferi 80a]
 gi|312149456|gb|ADQ29527.1| threonyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 581

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/411 (19%), Positives = 163/411 (39%), Gaps = 55/411 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE--FI 211
             DA+    T         ++    + ++ + G  ++     + P   +G D   E    
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFSNLKAYLSTKPDKSVGNDSDWEMSLK 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL +T            DF +P E            I +   A Y    D+   K+ DSL
Sbjct: 384 VLEET----------LSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSL 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAV 328
               ++S    +          ++LP   + T+   DGK+    M     +G++     +
Sbjct: 419 EREWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P ++ +I +   + +  D   K++ +    G  +  D+   ++
Sbjct: 469 LVEHYGGAFPLW---LSPVQVVIIPV---NNIVEDYAIKVFNKFKNEGIRIKLDNSSSRM 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVI 435
            ++         P   I+G +  ++ ++ I+ R    + GI+ D +L+ ++
Sbjct: 523 NAKIREYQAKKIPYMFIIGEREATEERISIRTRTNEQINGIKLDEALKFIL 573


>gi|91762425|ref|ZP_01264390.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718227|gb|EAS84877.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 638

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL     + H  + S G   W   G K    + A +R  Q + G  E++ P 
Sbjct: 238 EAEKRDHRKLGKEMDLFHFREESPGSVFWHEKGWKLFQKLVAYMRARQEKAGYKEVNTPE 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG ++ YG+ M      ++K     P +      +F   +KSYR+LP    
Sbjct: 298 ILDRSLWEKSGHWEKYGEHMYTSQTPDEKIFAIKPMNCPGHVQVFNQGLKSYRDLPLRIS 357

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +     R E      G++R R F   DA+ F
Sbjct: 358 EFGKVHRYEPSGALHGLLRVRAFTQDDAHIF 388


>gi|326386620|ref|ZP_08208242.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208935|gb|EGD59730.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 663

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G   W P G +    + A +R   +  G  E+  P +  A  W  SG +  Y +
Sbjct: 263 LQAEAHGSVFWHPKGYRIWRELEAYMRRAIDGAGYREVKTPQVMDARQWEASGHWGKYRE 322

Query: 92  EMLRLADR------------NDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D             +D A M   P +      IFR  IKSYR LP  FY+    
Sbjct: 323 NMFVIPDEVPNVEDEGPLVSDDAAWMALKPMNCPAHVLIFRQGIKSYRELPLRFYENGCC 382

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSF 163
            R+E      G+MR R+F   DA+ F
Sbjct: 383 HRNEPHGALHGLMRVRQFTQDDAHIF 408


>gi|116515019|ref|YP_802648.1| hypothetical protein BCc_078 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256873|gb|ABJ90555.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 642

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 6/184 (3%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           +L    I + S G+  W   G      +   +R +  +   IE+  P +    LW +SG 
Sbjct: 248 LLSLYHIQKESPGMIFWHKNGYIIFKQLENFLRNKLFQNNYIEVKSPIIIDKSLWKKSGH 307

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +  Y + +      N++  I  P +      IF+  +KSY++LP    +     R E   
Sbjct: 308 WKHYNQSIFTTKSENNQYCI-KPMNCPAHVQIFKYGLKSYKDLPIRMAEFGSCHRQETSG 366

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--- 201
              G+ R R F   DA+ F  T +  K   N        ++H  G K I ++  + P   
Sbjct: 367 SLHGLFRVRGFTQDDAHIF-CTKKQIKSELNHCIRLLFDLYHTFGFKKIFIKFSTRPENR 425

Query: 202 IGGD 205
           IG D
Sbjct: 426 IGKD 429


>gi|45185649|ref|NP_983365.1| ACL039Wp [Ashbya gossypii ATCC 10895]
 gi|44981367|gb|AAS51189.1| ACL039Wp [Ashbya gossypii ATCC 10895]
          Length = 724

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M ++ S G   WLP G +  +N+  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 331 MFNEMSPGSCFWLPHGTRIYNNLVELLRNEYRKRGYEEVITPNMYNSKLWETSGHWANYK 390

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   ++    P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 391 ENMFTF-EVEKESFGLKPMNCPGHCVMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 449

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 450 TRVRRFQQDDAHIF 463


>gi|56413681|ref|YP_150756.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362604|ref|YP_002142241.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|73919824|sp|Q5PH96|SYT_SALPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689908|sp|B5BA42|SYT_SALPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56127938|gb|AAV77444.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094081|emb|CAR59581.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 642

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 149/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +    V +    +G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVIIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---EYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|251789558|ref|YP_003004279.1| threonyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247538179|gb|ACT06800.1| threonyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 642

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 151/415 (36%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVRDEVNNCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                  D  E  +  +      P    P E   +   I                     
Sbjct: 434 ------WDRAEEDLAAALTENGLPFEYQPGEGAFYGPKIEFT------------------ 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L D L        R  + G +      +SLP  +SA++ G + +     M    I G+
Sbjct: 470 --LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYVGENNERQVPVMIHRAILGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP +  ++NI        D   ++  +L   G  V  
Sbjct: 518 MERFIGILTEEFAG---FFPTWLAPVQAVVMNITDSQS---DYVSELTRKLQDAGIRVKA 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  ++ G K V   KV ++ R       M++ EVI 
Sbjct: 572 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMNVSEVIT 626


>gi|238753686|ref|ZP_04615048.1| Threonyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238708238|gb|EEQ00594.1| Threonyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 642

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P     S E 
Sbjct: 375 RVRGFTQDDAHVF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDEL 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+                 P E   +   I                       L D 
Sbjct: 434 WTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +SLP  +SA++ G +       M    I G+M     
Sbjct: 474 LD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    +P  +AP ++ ++NI        +  +++  +L   G  V  D   E+
Sbjct: 524 ILTEEYAG---FFPTWIAPVQVVVMNITDSQA---EYVQEVTKKLQDAGIRVKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++ G K +   KV ++ R
Sbjct: 578 IGFKIREHTLRRVPYMLVCGDKEIETGKVAVRTR 611


>gi|257389171|ref|YP_003178944.1| prolyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257171478|gb|ACV49237.1| prolyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 484

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K V A         Y GT ++     T+   D ++      S+G+ + R + A+I 
Sbjct: 222 MPDGKSVQA-----ATSHYLGTSFAEAFDITYVDEDEEEETAHTTSWGL-SWRAMGALIM 275

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +  D +G++ P ++AP ++ ++ I      D+V   A + + A L + G  V +DD   +
Sbjct: 276 THSDDQGLVLPPTLAPKQVVVVPIWQEDTKDEVLEYAAD-VAAELDEAGVRVHFDDRDHR 334

Query: 388 -IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             G ++   +L G PL+V +G   V D ++ + HR  G
Sbjct: 335 NPGFKYNDWELKGVPLRVEIGPNEVEDEELTLSHRPDG 372


>gi|157962084|ref|YP_001502118.1| threonyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083623|sp|A8H4U6|SYT_SHEPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157847084|gb|ABV87583.1| threonyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 642

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 151/419 (36%), Gaps = 48/419 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++  +    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   +         +   G  SI ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVQQEVSACIKMVYDTYETFGFNSIVVKLSTRPEKRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+    Q   + D     +P E   +   I                       L
Sbjct: 432 -EMWDRAEEALKQALKANDIEFEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPGRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   W   ++P ++ ++NI        D  +++     + G     D  
Sbjct: 521 FLGILIEEYAGKFPAW---LSPVQVVVMNITDKQS---DYVDEVVNLFKEHGIRATKDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E+IG +     L   P  ++VG + + + +V ++ R       M +EE      ++ S
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTREGVDLGKMQIEEFATKLKNQIS 633


>gi|189345705|ref|YP_001942234.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|238692169|sp|B3EEC1|SYT_CHLL2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189339852|gb|ACD89255.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 657

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 152/407 (37%), Gaps = 64/407 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      +   ++EEQ + G + +  P + + +L+  SG Y  Y       L
Sbjct: 273 GLPVWLPKGAVIRSELETFLKEEQRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPL 332

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D + K   Y   P +      I+ S ++SYR+LP    +    +R E      G++R
Sbjct: 333 TYHDEDGKQEQYLLKPMNCPHHHLIYSSKLRSYRDLPIRLTEFGTVYRHEQSGELNGLVR 392

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGD 205
           +R F   D++ +  TPE               +F  LG   +  R      A     GG 
Sbjct: 393 ARGFTQDDSHIY-CTPEQLVDEICNAIDLTQFVFGTLGFSEVQTRLSMHDPANQQKYGGT 451

Query: 206 LSHEFIVLADTGETQVFCSKDFM--DFPIPSENTDF----DDIISLNSIVEQWTAPYAAT 259
                  + +  E  V  + D M  D+ I      F     D I  +++  +W       
Sbjct: 452 AE-----IWEQAEKDVREAADRMGIDYFIGVGEASFYGPKIDFIVRDALGRKWQLGTVQV 506

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYG 318
             V  E+ FD                               ++ G+DG+ H  V +    
Sbjct: 507 DYVMPER-FD------------------------------LSYIGSDGQKHRPVVIHRAP 535

Query: 319 IGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            G+M R +  +IE +  G   +W   +AP +  ++ I    +   D  + I+  L   G 
Sbjct: 536 FGSMERFIGVLIEHT-AGNFPLW---LAPVQAVVLPIA---EEVHDYAKTIHTALLAAGI 588

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            V  D   E+IG +   A++   P  +IVG K     ++ ++   +G
Sbjct: 589 RVEIDTRNEKIGRKIREAEIGKIPCMIIVGQKERDSGEISLRRHRSG 635


>gi|319653813|ref|ZP_08007907.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317394349|gb|EFV75093.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 399

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 175/438 (39%), Gaps = 56/438 (12%)

Query: 17  DAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +AE  +H+     L L T M  + + G+  +LP G    + + +  R +  R G  E+  
Sbjct: 2   EAEKINHRKLGQELELFTSM--EEAPGMPFFLPNGMVMRNELESYWRRKHQRAGYQEIKT 59

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +   +LW +SG ++ Y + M   ++ +++     P +      +F S  +SYR LP  
Sbjct: 60  PIMMKQELWEQSGHWNHYHENMY-FSNVDEQNYAIKPMNCPGAILVFNSKRRSYRELPLR 118

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++ L  R EL     G++R R F   DA+ F +  +  +   +K+ V     +   G 
Sbjct: 119 YAELGLVHRHELSGSLNGLLRVRSFTQDDAHLFVMADQ-IEAEIDKILVLIDEFYSHFGF 177

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     S E    A+     V  +K  +++ I   +  F           
Sbjct: 178 -DYKVELSTRPEEYMGSQEMWERAEGALESVLKNKG-VNYQINPGDGAF----------- 224

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGK 308
                Y    D H   + DSL        R  + G I      + +P   +  + G D K
Sbjct: 225 -----YGPKIDFH---ILDSL-------GRSWQCGTI---QLDFQMPQKFNCAYVGEDNK 266

Query: 309 DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACE 366
            H   M    I G++    A++     G   +W   ++P +  +I I  +H +      +
Sbjct: 267 LHLPIMIHRAIFGSVERFMAILIEHFAGDFPLW---LSPVQAKIIPISDSHAEY----AD 319

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + ++L + G     D   E++G +   A     P  +++G K +    + ++ R  G  
Sbjct: 320 YVKSQLEEAGIRAEADFRTEKMGLKIREAAKQKVPYMLVIGDKEMEQQSLSLRKRKEGNI 379

Query: 427 EDMSLEEVINYASHRFSN 444
             MS+++VI     RF N
Sbjct: 380 GVMSIKDVIE----RFIN 393


>gi|296110556|ref|YP_003620937.1| threonyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295832087|gb|ADG39968.1| threonyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 654

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 155/393 (39%), Gaps = 48/393 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   I +++   G   +  P L + +L+  SG +D Y ++M    
Sbjct: 266 GLPVWLPNGATIRRQVERYITDKELANGYQHVYTPVLSNLNLYKTSGHWDHYREDMFPPM 325

Query: 98  DRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  D   +       P+H  +M  +F+   +SYR LP    ++ +  R E      G+ R
Sbjct: 326 DMGDGEFLELRPMNCPSH--IM--VFKHKPRSYRELPIRIAELGMMHRYEKSGALTGLSR 381

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE  + D ++F + PE  +  +  +    + ++    +     R         LS+   
Sbjct: 382 VREMTLNDGHTF-VEPEKLEEEFKSILTMMMEVYRDFNITDYRFR---------LSYR-- 429

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDS 270
              D   T+ +   D M     ++     D + L+    E   A Y    DV  +    +
Sbjct: 430 ---DPKNTEKYFDDDEMWEKSQAQLKRAMDDLKLDYYEAEGEAAFYGPKLDVQTKT---A 483

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAV 328
           L   + +S   ++    F    +++L    T+ GADG+D++  V +    +G M    A 
Sbjct: 484 LGGEETMSTIQLD----FLLPERFNL----TYIGADGQDNHRPVMLHRGIVGTMERFTAY 535

Query: 329 IESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +   + G    W   ++P ++ +I  N+ AH     D    +   L   G  V  +    
Sbjct: 536 LIEMYKGAFPTW---LSPLQVQIIPVNLAAHG----DYANAVQKELQAAGLRVNVEKKEA 588

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           ++G     A     P  +++G   V++  V I+
Sbjct: 589 KMGYLIREAQTNKVPYTLVLGDSEVNEQTVTIR 621


>gi|163756231|ref|ZP_02163346.1| uracil phosphoribosyltransferase [Kordia algicida OT-1]
 gi|161323843|gb|EDP95177.1| uracil phosphoribosyltransferase [Kordia algicida OT-1]
          Length = 647

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 85/459 (18%), Positives = 169/459 (36%), Gaps = 63/459 (13%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L T    +  +G+  WLP G      +   +++ Q +
Sbjct: 228 KEYLHLLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRSQLENFLKKAQQK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P +   +L+V SG Y  YG++  +  +  + D+  +  P +     +I+ + 
Sbjct: 287 AGYEMVISPHIGQKELYVTSGHYAKYGEDSFQAINTPKEDEEFLLKPMNCPHHCEIYNTK 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +   
Sbjct: 347 PFSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDQEFKNVIDL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +F  LG  +   +              + L D  + + +                  
Sbjct: 406 VMYVFESLGFDNFTAQ--------------VSLRDPEKPEKYIGS--------------- 436

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT 292
                    E W     A  +   EK  + + E    +  G +        +G  +  GT
Sbjct: 437 --------TENWEKAENAIINAAKEKELNYVIEYGEAAFYGPKLDFMVKDALGRSWQLGT 488

Query: 293 ---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP     T+KG+D + H  V +     G+M    A++     G   +W  +   
Sbjct: 489 IQVDYNLPERFDLTYKGSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLMTEQA 548

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
             + +       +   +  +K+   L         D+  E +G +   A++   P  +I+
Sbjct: 549 ILLPV------SEKYENYGKKVLTLLENHEIRAQIDNRNETVGKKIREAEMSKVPFMLII 602

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G +   D  V ++    G    +++E   +      +N+
Sbjct: 603 GEQEEKDGTVSVRRHGVGDIGTLTMEAFADMVKEEINNS 641


>gi|118444161|ref|YP_878835.1| prolyl-tRNA synthetase [Clostridium novyi NT]
 gi|152016596|sp|A0Q2I3|SYP_CLONN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118134617|gb|ABK61661.1| prolyl-tRNA synthetase [Clostridium novyi NT]
          Length = 478

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGV-TTRLIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +AP ++ ++ I  H +   D  E++  R++KV   V  D   +  G +F   ++ 
Sbjct: 284 KLPPRIAPLQVVIVPIAQHKEGVLDKAEELRQRIAKVA-RVKVDSSDKMPGWKFNEYEMK 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K + +++V +  R T  +  +S++E+
Sbjct: 343 GVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDEL 378


>gi|293376470|ref|ZP_06622699.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325842051|ref|ZP_08167588.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
 gi|292644892|gb|EFF62973.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325489773|gb|EGC92129.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 645

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/418 (18%), Positives = 180/418 (43%), Gaps = 44/418 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G K    +   I E +   G   ++ P + S DL+  SG +  Y ++M   
Sbjct: 259 QGLPIWLPNGMKVRQQIERYITELEEDYGYQHVATPVMGSVDLYRTSGHWAHYQEDMFVP 318

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            + +++ ++  P        ++++ ++SYR+LP  + +  ++ R E      G+ R R  
Sbjct: 319 MEMDNEELVLRPMSCPHHMMVYKTKLRSYRDLPIRYAEQVIQHRFEASGALTGLERVRAM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D++ F + P+  K  +++     L + HR+ +K           G ++++  + L D
Sbjct: 379 TLTDSHLF-VRPDQIKEEFSRC----LELIHRV-IKD---------FGVEINYYRLSLRD 423

Query: 216 TGETQVFCSKDFMDFPIPSENTD--FDDIISLNSI----VEQWTAPYAATSDVHNEKLFD 269
               + +   D M      EN +    + +  N+I     E   A Y    D+   ++  
Sbjct: 424 PENKEKYFDDDQM-----WENAESMLRETLIENNIPFIEAEGEAAFYGPKLDI---QIKT 475

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
           +L  +  +S   ++    F    ++ L    T+    G K   V M    IG      A 
Sbjct: 476 ALGHDITMSTIQLD----FLLPERFDL----TYVSETGEKVRPVVMHRGLIGTYERFMAY 527

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +  ++ G   +W   +AP ++++I +  ++Q   +  +++   L K    +  D+  E++
Sbjct: 528 LIETYKGAFPLW---LAPTQVTVIPV--NNQYHLEYAKEVAKELRKYRVRLEIDEREEKM 582

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G +   +     P+ +++G K V++++V  +       + + L+E +++     +  +
Sbjct: 583 GYKIRESQTKKIPMSIVLGDKEVANNEVTFRRFGEQKTQTLPLKEFVHFLVEEIAERK 640


>gi|229017690|ref|ZP_04174581.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228743616|gb|EEL93725.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 639

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|45358259|ref|NP_987816.1| prolyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|74579597|sp|Q6LZD3|SYP_METMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|44921016|emb|CAF30252.1| Prolyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 460

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G +   G  ++      F+  DG+  +V    YGI   R +A++I    D KG+
Sbjct: 212 GKTMQIGTVHNLGQNFAKTFELEFETPDGEKDFVYQTCYGISD-RAIASLISVHGDEKGL 270

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  VAP +I LI +  K  +++  D  +++   L K    V  DD   + G ++   +
Sbjct: 271 VIPVDVAPIQIVLIPLLFKGKEEIVMDKIKELNNTL-KSEFRVHLDDRDIRPGRKYNDWE 329

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           L G PL++ +G + + +    I  R TG
Sbjct: 330 LKGVPLRIELGPRDIENGHALIVRRDTG 357



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP G K       I+R+  + TG  E   P L   +L  + G +    ++ +  
Sbjct: 24  KGCGVYLPYGFKIRRYSFEILRKLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFW 83

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                K      +   PT E  M  + +  IK + +LP   YQ+   FR E +    ++R
Sbjct: 84  VTHGGKTPLEVKLALRPTSETTMYYMMKQWIKVHTDLPLKLYQVVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPI-GGDLSH 208
            RE +  K+A++   T +       +    Y   F  +G+   I  R E     G D + 
Sbjct: 144 LREIMSFKEAHTAHATKKECDAQIEEALTLYKAFFDEIGVPYVISKRPEWDKFPGADYTM 203

Query: 209 EFIVLADTGET----------QVFCSKDFMDFPIPSENTDF 239
            F  +   G+T          Q F     ++F  P    DF
Sbjct: 204 AFDTIYPDGKTMQIGTVHNLGQNFAKTFELEFETPDGEKDF 244


>gi|262189799|ref|ZP_06048144.1| prolyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|262034317|gb|EEY52712.1| prolyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
          Length = 91

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 49/83 (59%)

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+
Sbjct: 9   VQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKN 68

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R  G +E +++E +I++   + +
Sbjct: 69  RRQGEKEAVAMESIIDFIQAKLA 91


>gi|150024985|ref|YP_001295811.1| threonine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
 gi|166223340|sp|A6GY22|SYT_FLAPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149771526|emb|CAL42995.1| Threonine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 648

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/430 (19%), Positives = 159/430 (36%), Gaps = 61/430 (14%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L +L+E  R       K +       +  +G+  WLP G    D +   +++ Q + G 
Sbjct: 229 YLELLEEAKRRDHRKLGKELELFAFSQKVGQGLPLWLPKGAALRDRLEQFLKKAQKKGGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            ++  P +   +L+V SG Y  YG +  +        +  +  P +     +I+     S
Sbjct: 289 EQVVTPHIGQKELYVTSGHYAKYGADSFQPISTPTEGEEFLLKPMNCPHHCEIYNVRPWS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+    L 
Sbjct: 349 YKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFKKVIDLVLY 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  LG ++   +              I L D      +   D                 
Sbjct: 408 VFGSLGFENFTAQ--------------ISLRDKENRDKYIGSD----------------- 436

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT--- 292
                 E W     A  +   +K  +++ E    +  G +        +G  +  GT   
Sbjct: 437 ------ENWEKAENAIINAARDKNLNTVVEYGEAAFYGPKLDFMVKDALGRSWQLGTIQV 490

Query: 293 KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            Y+LP     T+KG+D + H  V +     G+M    A++     G   +W   + P + 
Sbjct: 491 DYNLPERFELTYKGSDDQLHRPVMIHRAPFGSMERFIAILLEHTAGNFPLW---LMPEQA 547

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ +    ++     +K+   L         D+  E IG +   A++   P  +IVG +
Sbjct: 548 IILCLSDKYEIY---AKKVLNLLENHEIRALIDNRNESIGRKIRDAEMQKTPFMLIVGEE 604

Query: 410 FVSDSKVEIK 419
              ++ + I+
Sbjct: 605 EEKNNTISIR 614


>gi|114559269|ref|XP_001168944.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 9 [Pan
           troglodytes]
          Length = 718

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 167/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 296 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 355

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 356 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 415

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 416 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 475

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G                   C  D  +  
Sbjct: 476 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP-----------------CLWDQAEQV 514

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +     +F +   LNS      A Y    DVH   L D+L        R  + G I    
Sbjct: 515 LKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 558

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF+
Sbjct: 559 LDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQ 615

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I + +  ++  ++A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 616 VVVIPVGSEQEEYAKEAQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVG 672

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 673 QKEQSKRTVNIRTR 686


>gi|326693745|ref|ZP_08230750.1| threonyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 654

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 154/393 (39%), Gaps = 48/393 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   I +++   G   +  P L + +L+  SG +D Y ++M    
Sbjct: 266 GLPVWLPNGATIRRQVERYITDKELANGYQHVYTPVLSNLNLYKTSGHWDHYREDMFPPM 325

Query: 98  DRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  D   +       P+H  +M  +F+   +SYR LP    ++ +  R E      G+ R
Sbjct: 326 DMGDGEFLELRPMNCPSH--IM--VFKHKPRSYRELPIRIAELGMMHRYEKSGALTGLSR 381

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE  + D ++F + PE  +  +  +    + ++    +     R         LS+   
Sbjct: 382 VREMTLNDGHTF-VEPEKLEEEFKSILTMMMEVYRDFNITDYRFR---------LSYR-- 429

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDS 270
              D   T+ +   D M     ++     D + L+    E   A Y    DV  +    +
Sbjct: 430 ---DPKNTEKYFDDDEMWEKSQAQLKRAMDDLGLDYYEAEGEAAFYGPKLDVQTKT---A 483

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAV 328
           L   + +S   ++    F    +++L    T+ GADG+D++  V +    +G M    A 
Sbjct: 484 LGNEETMSTIQLD----FLLPERFNL----TYIGADGQDNHRPVMLHRGIVGTMERFTAY 535

Query: 329 IESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +   + G    W   +AP ++ +I  N+ AH        E+I  +L   G     +    
Sbjct: 536 LIEMYKGAFPTW---LAPLQVQIIPVNLGAHGAY----AEQIKKQLQDAGLRANVETKDA 588

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           ++G     A     P  +++G   V    V ++
Sbjct: 589 KMGYLIREAQTNKIPYTLVLGDSEVEGQTVTVR 621


>gi|20070344|ref|NP_079426.2| threonyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]
 gi|74752395|sp|Q9BW92|SYTM_HUMAN RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|12802990|gb|AAH00541.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|14603040|gb|AAH09997.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|55958996|emb|CAI15488.1| threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119573933|gb|EAW53548.1| threonyl-tRNA synthetase-like 1, isoform CRA_a [Homo sapiens]
 gi|168275836|dbj|BAG10638.1| threonyl-tRNA synthetase [synthetic construct]
          Length = 718

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 167/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 296 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 355

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 356 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 415

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 416 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 475

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G                   C  D  +  
Sbjct: 476 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP-----------------CLWDQAEQV 514

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +     +F +   LNS      A Y    DVH   L D+L        R  + G I    
Sbjct: 515 LKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 558

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF+
Sbjct: 559 LDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQ 615

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I + +  ++  ++A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 616 VVVIPVGSEQEEYAKEAQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVG 672

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 673 QKEQSKRTVNIRTR 686


>gi|326792022|ref|YP_004309843.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542786|gb|ADZ84645.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 657

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 163/409 (39%), Gaps = 43/409 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G + +  +   + +E+ + G +    P +  +DL+  SG +D Y   M  L
Sbjct: 261 QGLPLLMPKGARIVQTLQRFVEDEEEKRGYVLTKTPLMAKSDLYKMSGHWDHYKDGMFVL 320

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D      ++   P        ++ +   SYR+LP  + +    FR+E      G++R R
Sbjct: 321 GDEEKDKEVFALRPMTCPFQFTVYNAEQHSYRDLPIRYGETSTLFRNESSGEMHGLIRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F + + +    TPE  +  +  +      +   LG+++            D+S+ F   
Sbjct: 381 QFTISEGH-LVCTPEQLEDEFRGVIELINYMMATLGIEN------------DISYRFSKW 427

Query: 214 --ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY---AATSDVHNEKLF 268
             A+TG+        +++ P   E T+      + +I++     Y      +  +  KL 
Sbjct: 428 DPANTGK--------YINDPEAWERTEG----LMRNILDHLQINYEEAVGEAAFYGPKLD 475

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
                        I V   F  G +    +  T+  ADG K H + +    IG      A
Sbjct: 476 IQFKNVHGKEDTIITVQIDFALGER----LGMTYIDADGEKKHPLIIHRTSIGCYERTLA 531

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G+   +P  +AP  + ++ +   D+    A E + A        V  D   E+
Sbjct: 532 MLIEKYAGQ---FPTWLAPVAVKVLPLS--DKYADYAAEVVKAFKDHGILKVEADYRTEK 586

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +   A +   P  V+VG++ + +  V ++ R  G     SLE  +N
Sbjct: 587 IGYKIREARMERIPYIVVVGAEEMENKTVSVRSRQKGDEGVQSLESFVN 635


>gi|253998429|ref|YP_003050492.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|313200504|ref|YP_004039162.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|253985108|gb|ACT49965.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|312439820|gb|ADQ83926.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 640

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 143/408 (35%), Gaps = 70/408 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      V   +R    + G  E+  PT+    LW +SG + +Y +
Sbjct: 260 MQDEAPGMVFWHPRGWNLWQEVEQYMRGLFRQYGYQEVKTPTIMDRSLWEKSGHWQNYRE 319

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N    +  P +      IF S + SYR+LP    +     R+E      G+M
Sbjct: 320 NMFTTSSENRDYAV-KPMNCPGHIQIFNSGLHSYRDLPLRLAEFGSCHRNEPSGALHGLM 378

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  K       V   + +   G   + ++  + P   +G D  
Sbjct: 379 RVRGFTQDDAHIF-CTEDQVKQEVADFIVMLYQAYKDFGFNDVLVKLSTRPEKRVGSD-- 435

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV--HNE 265
                                                     E W    A+ +     N 
Sbjct: 436 ------------------------------------------ETWDKAEASLAAALRENN 453

Query: 266 KLFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQ 313
             FD  P         IE      +G ++  GT    ++LP  + A +   D  + H V 
Sbjct: 454 LAFDLQPGEGAFYGPKIEFTLKDSLGRLWQCGTIQLDFNLPERLGAEYVAEDNTRKHPVM 513

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+M     ++  ++ G    W   +AP +  ++NI           +++ A L 
Sbjct: 514 LHRAIVGSMERFLGILIENYAGAMPTW---LAPVQAMVLNITDSQSAY---VQEVVAELR 567

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           K G  V  D   E+I  +     L   P  ++ G + +   +V ++ R
Sbjct: 568 KNGFRVDSDLRNEKITYKIREHSLQKLPYLLVAGDREMQSGQVAVRTR 615


>gi|224476774|ref|YP_002634380.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783537|sp|B9DNC9|SYT_STACT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222421381|emb|CAL28195.1| threonyl-tRNA synthetase 1 [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 647

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 171/405 (42%), Gaps = 41/405 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P + + +L+  SG +D Y  +M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVALGYDHVYTPVMANVELYKTSGHWDHYQDDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ + M+  P +      I+++   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDETEEMVLRPMNCPHHMMIYKNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D++ F + P+  K  + ++    L ++   G ++   R +   P   +   +   + 
Sbjct: 382 TLNDSHIF-VRPDQIKEEFKRVVELILDVYEDFGFENYSFRLSYRDPEDKEKYFDDDEMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E+ +  + D M  P       +++ I          A Y    DV   ++  ++ + 
Sbjct: 441 ERAESMLKEAVDEMGLP-------YEEAIG-------EAAFYGPKLDV---QVKTAMGKE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L     + G DG++H   +   G+ +   R VA + E +
Sbjct: 484 ETLSTAQLD----FLLPERFDL----AYIGKDGEEHRPVVIHRGVVSTMERFVAFLTEET 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I  N+  H     D   +I   L   G  V  DD  E++G 
Sbjct: 536 ---KGA-FPTWLAPKQVEIIPVNVDLH----YDYARQIQDELKSQGVRVEIDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   A +   P Q+++G K + +++V ++   +  +E +  +E I
Sbjct: 588 KIREAQMHKIPYQLVIGDKEIENNEVNVRKYGSKDQETVEKDEFI 632


>gi|11066246|gb|AAG28517.1|AF197899_1 prolyl-tRNA synthetase [Methanococcus maripaludis]
          Length = 460

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G +   G  ++      F+  DG+  +V    YGI   R +A++I    D KG+
Sbjct: 212 GKTMQIGTVHNLGQNFAKTFELEFETPDGEKDFVYQTCYGISD-RAIASLISVHGDEKGL 270

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  VAP +I LI +  K  +++  D  +++   L K    V  DD   + G ++   +
Sbjct: 271 VIPVDVAPIQIVLIPLLFKGKEEIVMDKIKELNKTL-KSEFRVHLDDRDIRPGRKYNDWE 329

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           L G PL++ +G + + +    I  R TG
Sbjct: 330 LKGVPLRIELGPRDIENGHALIVRRDTG 357



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP G K       I+R+  + TG  E   P L   +L  + G +    ++ +  
Sbjct: 24  KGCGVYLPYGFKIRRYSFEILRKLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFW 83

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                K      +   PT E  M  + +  IK + +LP   YQ+   FR E +    ++R
Sbjct: 84  VTHGGKTPLEVKLALRPTSETTMYYMMKQWIKVHTDLPLKLYQVVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPI-GGDLSH 208
            RE +  K+A++   T +       +    Y   F  +G+   I  R E     G D + 
Sbjct: 144 LREIMSFKEAHTAHATKKECDAQIEEALTLYKAFFDEIGVPYVISKRPEWDKFPGADYTM 203

Query: 209 EFIVLADTGET----------QVFCSKDFMDFPIPSENTDF 239
            F  +   G+T          Q F     ++F  P    DF
Sbjct: 204 AFDTIYPDGKTMQIGTVHNLGQNFAKTFELEFETPDGEKDF 244


>gi|119513050|ref|ZP_01632106.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119462292|gb|EAW43273.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 602

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 8/171 (4%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            Q   G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++
Sbjct: 211 EQVGPGLPLWTPKGTLLRSVLEDFLKKEQLKRGYLPVVTPHIARVDLFKTSGHWQKYKED 270

Query: 93  MLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           M  L   +++A       +  P +      I++S ++SYR LP    +    +R E    
Sbjct: 271 MFPLMSDDEEAAALEQGFVLKPMNCPFHIQIYKSELRSYRELPIRLAEFGTVYRYEQSGE 330

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             G+ R R F + D++ F +TPE     +  +    L +F  L LK+   R
Sbjct: 331 LGGLTRVRGFTVDDSHLF-VTPEQLDSEFLNVVDLILSVFKSLQLKNFKAR 380


>gi|239637520|ref|ZP_04678492.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596738|gb|EEQ79263.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 645

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 172/409 (42%), Gaps = 49/409 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M   +
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 321

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +L +  +  M+  P +      I+ +   SYR LP    ++    R E      G+ R R
Sbjct: 322 KLDETEE--MVLRPMNCPHHMMIYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVR 379

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              + D++ F + P+  K  + ++      ++   G +    R         LS+     
Sbjct: 380 GMTLNDSHIF-VRPDQIKEEFKRVVNMIQDVYKDFGFEDYRFR---------LSYR---- 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDS 270
            D  + + +   D M     +   +  D + L+   +I E   A Y    DV   ++  +
Sbjct: 426 -DPEDKEKYFDDDEMWNKAENMIKEAADELGLSYEEAIGE--AAFYGPKLDV---QVKTA 479

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAV 328
           + + + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA +
Sbjct: 480 MGKEETLSTAQLD----FLLPERFEL----TYIGQDGEQHRPVVIHRGVVSTMERFVAFL 531

Query: 329 IESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            E +   KG  +P  +AP ++ +I  N+  H     D  + I   L   G  V  DD  E
Sbjct: 532 TEET---KG-AFPTWLAPKQVEIIPVNLDLH----YDYAKSIQDELKSQGVRVEIDDRNE 583

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           ++G +   A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 584 KMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRKYGSQDQETLEKDEFI 632


>gi|116070824|ref|ZP_01468093.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. BL107]
 gi|116066229|gb|EAU71986.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. BL107]
          Length = 615

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 155/415 (37%), Gaps = 39/415 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEDFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYAESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 QVDEREYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ F L P+       ++     RI       +  +   + P     S     LA 
Sbjct: 348 TQDDAHVFCL-PDQISDEILRILDLTERILSTFDFNNYEINLSTRPEKSIGSEAVWDLAT 406

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G T+    K +        N   D         E   A Y    D+   K+ D++    
Sbjct: 407 KGLTEALERKGW--------NYKID---------EGGGAFYGPKIDL---KIEDAIGRMW 446

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHD 334
           + S   ++      FG  Y          ADG K   + +     G++     ++  ++ 
Sbjct: 447 QCSTIQLDFNLPERFGLDYV--------AADGSKQQPIMIHRAIFGSLERFFGIMTENYA 498

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G    W   +AP +I L+ +   D V +   E++  +L   G     D  G+++G     
Sbjct: 499 GDFPFW---LAPEQIRLLPVT--DDV-QPYAEQLLDQLKTAGIRATIDQSGDRLGKIIRT 552

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + +  P+  ++G+K    + V ++ R  G     S++ ++N A    +  +P L
Sbjct: 553 GEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVTSVDALLNAAKWANTERQPGL 607


>gi|39644807|gb|AAH07824.2| TARS2 protein [Homo sapiens]
          Length = 709

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 167/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 287 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 346

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 347 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 406

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 407 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 466

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G                   C  D  +  
Sbjct: 467 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP-----------------CLWDQAEQV 505

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +     +F +   LNS      A Y    DVH   L D+L        R  + G I    
Sbjct: 506 LKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 549

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF+
Sbjct: 550 LDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQ 606

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I + +  ++  ++A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 607 VVVIPVGSEQEEYAKEAQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVG 663

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 664 QKEQSKRTVNIRTR 677


>gi|297808713|ref|XP_002872240.1| AT5g26830/F2P16_90 [Arabidopsis lyrata subsp. lyrata]
 gi|297318077|gb|EFH48499.1| AT5g26830/F2P16_90 [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+ +   +   HQ S G Y +LPLG +  + +   I+
Sbjct: 304 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 359

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTD 116
           ++  + G  E+  P + +  LW  SG  D+Y   M      N +   +G  P +      
Sbjct: 360 KQYWQRGYTEVITPNMYNMALWETSGHADNYKDNMFTF---NIEKQEFGLKPMNCPGHCL 416

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           IF+  ++SYR LP       +  R+E      G+ R R F   DA+ F  T +
Sbjct: 417 IFQHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQ 469


>gi|326674558|ref|XP_002664809.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like, partial
           [Danio rerio]
          Length = 441

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 160/417 (38%), Gaps = 58/417 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  S G   ++P G    + +   I+ E  R G  E+  PTL S  LW  SG +  Y +
Sbjct: 56  FHDVSPGSCFFMPKGAHIYNTLTDFIKSEYRRRGFSEVVTPTLFSTALWERSGHWQHYSE 115

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  ++          P +      +F   ++S+R +P  +       R+E      G+ 
Sbjct: 116 NMFSVSSET-HTFALKPMNCPAHCVMFEQRLRSWREMPIRWADFGALHRNEASGTLGGLT 174

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSH 208
           R R F   DA+ F  TPE  +       + ++R  +R+   S      + P    GD + 
Sbjct: 175 RVRRFCQDDAHIF-CTPEQLEQEITAC-LDFVRSVYRVFGFSFHCLLSTRPASSMGDSA- 231

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
               L D  E Q+                      SL    E+W       A Y    D+
Sbjct: 232 ----LWDCAEQQLES--------------------SLKLFQERWELNPGDGAFYGPKIDI 267

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGA 321
               + D+L    + +   ++    F    +++L     + GADG+    + +    +G+
Sbjct: 268 ---LIRDALGRQHQCATIQLD----FQLPIRFNL----QYVGADGQMKRPIMIHRAVLGS 316

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDV 379
           +  + A++  +  GK   WP  ++P ++ ++ +    +      +++ +RL + G   D+
Sbjct: 317 LERMIAILAENFGGK---WPFWLSPAQVMVVPVGGSSEA---YAQQVVSRLREAGFMADI 370

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             DD G  +  +   A L  +    +VG K      V ++ R        +LE+V+ 
Sbjct: 371 D-DDHGNTLNKKIRSAQLAQYNYIFVVGEKESECGTVSVRTRAGQQIGQKTLEDVMK 426


>gi|253680953|ref|ZP_04861756.1| proline--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253562802|gb|EES92248.1| proline--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 500

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I    D  G+
Sbjct: 247 GKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGV-TTRLIGAIIMVHGDDSGL 305

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +AP ++ ++ I  H +   D  E++  ++SKV   V  D   +  G +F   ++ 
Sbjct: 306 KLPPRIAPLQVVIVPIAQHKEGVLDKAEELRQQISKVA-RVKVDSSDKMPGWKFNEYEMK 364

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K + +++V +  R T  +  +S++E+
Sbjct: 365 GVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDEL 400


>gi|304397616|ref|ZP_07379493.1| threonyl-tRNA synthetase [Pantoea sp. aB]
 gi|304354788|gb|EFM19158.1| threonyl-tRNA synthetase [Pantoea sp. aB]
          Length = 642

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 148/400 (37%), Gaps = 54/400 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHVF-CTEEQVRDEVNSCIRMVYDMYSTFGFEKIVVKLSTRPEKRIGTD-- 431

Query: 208 HEFIVLADTGETQVFCS--KDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  +  ++ ++F   P E   +   I                     
Sbjct: 432 ----EMWDRAEEDLAAALNENNIEFEFQPGEGAFYGPKIEFT------------------ 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L+D L        R  + G +      +SLP  + AT+ G +       M    I G+
Sbjct: 470 --LYDCLD-------RAWQCGTV---QLDFSLPKRLEATYVGENNDRQTPVMIHRAILGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP ++ ++NI        +  E +  +L   G  V  
Sbjct: 518 MERFIGILTEEFAG---FFPTWLAPLQVVVMNITDGQA---EYVESLTRKLQNAGIRVKA 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 572 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|290981498|ref|XP_002673467.1| predicted protein [Naegleria gruberi]
 gi|284087051|gb|EFC40723.1| predicted protein [Naegleria gruberi]
          Length = 670

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 1/148 (0%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
             H H+ G+ S LP G++  ++V + +RE   R G  E+  P + + DLW  +SG  + +
Sbjct: 287 FFHPHAPGMVSLLPHGKRICNSVQSQLREAYWRYGFAEVQSPIVLNKDLWYYQSGSRNQW 346

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            ++     + + +  I  P ++ +   ++R+  +SYR+LP  + +    F D ++P    
Sbjct: 347 WQQYNFALEIDKEYYILKPYNKPIHCIMYRNKSRSYRDLPIRYVEFGSVFPDNIKPFRLN 406

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R R F   ++  F  + +  K   N +
Sbjct: 407 GRLRSFQKDESTIFCQSDQTKKEVLNCL 434


>gi|160902301|ref|YP_001567882.1| threonyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|189083616|sp|A9BHF0|SYT_PETMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160359945|gb|ABX31559.1| threonyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 640

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
            ML++ M    + G+  +LP G+  L+ + A  R+   + G +E+  P + +  LW +SG
Sbjct: 253 FMLQSEM----APGMPFFLPNGKIVLNELMAYSRQVHKKYGYVEVETPQIMNIKLWHQSG 308

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            +D Y KE +   ++ D  M   P +      I++++  SYR+LP   ++     R E  
Sbjct: 309 HWDHY-KENMFFTEKEDMPMAVKPMNCPGHILIYKNNFVSYRDLPIRMFEFGKVHRYERS 367

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               G+ R R F   DA+ F + P   +    K+      IF   G K
Sbjct: 368 GVLHGLFRVRAFTQDDAHIFCM-PSQMEEEIIKVIQLTNEIFSTFGFK 414


>gi|332638317|ref|ZP_08417180.1| threonyl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 658

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 158/392 (40%), Gaps = 47/392 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I + + + G   +  P + + +L+ +SG +D Y  +M    
Sbjct: 265 GLAVWMPNGAAIRRTLERYIVDREVQDGYQHVYTPIMSNLNLYKQSGHWDHYRDDMFPPM 324

Query: 98  DRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  D   +       P+H  +M  +F+   +SYR LPF   ++ +  R E      G+ R
Sbjct: 325 DMGDGEFLELRPMNCPSH--IM--VFKHKPRSYRELPFRIAELGMMHRYEKSGALTGLSR 380

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE  + D ++F + P+  +  + K+    + ++    +     R         LS+   
Sbjct: 381 VREMTLNDGHTF-VMPDQIEDEFKKILGLMIDVYADFDITDYRFR---------LSYR-- 428

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDS 270
              D   T+ +   D M     +      D + L+    E   A Y    DV   ++  +
Sbjct: 429 ---DPENTEKYYDDDDMWEKAQTMLKKAMDDLELDYFEAEGEAAFYGPKLDV---QIKTA 482

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVI 329
           L   + +S   ++    F    ++ +     + G DG+ H   M   G I  M    A +
Sbjct: 483 LGGEETLSTIQLD----FLLPERFDV----NYVGPDGELHRPVMIHRGIISTMERFTAYL 534

Query: 330 ESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              + G    W   +AP ++ +I  N  AH +  +D  +    RL K G    ++D  E+
Sbjct: 535 TEMYKGAFPTW---LAPHQVRIIPVNRDAHGKFAKDLAD----RLIKQGIRAEYEDRNEK 587

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +G     A     P  +++G + V+++ V I+
Sbjct: 588 LGYLIRDAQTSKVPYTLVIGDEEVNNNTVTIR 619


>gi|292488129|ref|YP_003531006.1| threonyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292899340|ref|YP_003538709.1| threonyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291199188|emb|CBJ46302.1| threonyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291553553|emb|CBA20598.1| Threonyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|312172261|emb|CBX80518.1| Threonyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 642

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 90/428 (21%), Positives = 155/428 (36%), Gaps = 56/428 (13%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L + +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 230 AAYLLRLEEAAKRDHRKIGKQLDLYH--MQEEAPGMVFWHNDGWTIFRELEVFVRTKLKE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +++Y + M   +  N +  I  P +      IF   +K
Sbjct: 288 YEYQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSENREYCI-KPMNCPGHVQIFNQGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N       
Sbjct: 347 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVY 405

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSEN 236
            ++   G + I ++  + P   IG D       L D  ET +  +      P    P E 
Sbjct: 406 DMYSTFGFEKIVVKLSTRPEKRIGSD------ELWDRSETDLAAALKENGIPFEYQPGEG 459

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I                       L D L        R  + G +      +SL
Sbjct: 460 AFYGPKIEFT--------------------LHDCLD-------RAWQCGTV---QLDFSL 489

Query: 297 P--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  +SA++ G   +     M    I G+M     ++   + G    +P  +AP ++ ++N
Sbjct: 490 PGRLSASYVGESNERQVPVMIHRAILGSMERFIGILTEEYAG---FFPTWLAPLQVVVMN 546

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        +   ++  +L   G     D   E+IG +     L   P  ++ G K V  
Sbjct: 547 ITDGQS---EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEA 603

Query: 414 SKVEIKHR 421
            KV ++ R
Sbjct: 604 GKVAVRTR 611


>gi|126697616|ref|YP_001086513.1| prolyl-tRNA synthetase [Clostridium difficile 630]
 gi|255099208|ref|ZP_05328185.1| prolyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255304991|ref|ZP_05349163.1| prolyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|122974211|sp|Q18CD7|SYP2_CLOD6 RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|115249053|emb|CAJ66864.1| Prolyl-tRNA synthetase [Clostridium difficile]
          Length = 481

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 226 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 285 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFNEWEM 344

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G P++V +G K + +++  +  R T  ++ M LE
Sbjct: 345 KGVPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLE 379


>gi|114559279|ref|XP_001168807.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 4 [Pan
           troglodytes]
          Length = 657

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 167/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 235 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 294

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 295 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 354

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 355 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 414

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G                   C  D  +  
Sbjct: 415 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP-----------------CLWDQAEQV 453

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +     +F +   LNS      A Y    DVH   L D+L        R  + G I    
Sbjct: 454 LKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 497

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF+
Sbjct: 498 LDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQ 554

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I + +  ++  ++A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 555 VVVIPVGSEQEEYAKEAQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVG 611

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 612 QKEQSKRTVNIRTR 625


>gi|294782476|ref|ZP_06747802.1| threonine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294481117|gb|EFG28892.1| threonine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 637

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 167/414 (40%), Gaps = 52/414 (12%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    I ++  G   +LP G    + +  + R+E  + G +++  P 
Sbjct: 236 EAEKRDHRKLGKELELFFISEYGPGFPFFLPKGMVFRNVLIDLWRKEHEKAGYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y +E +  ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNY-RENMYTSEIDELEFAIKPMNCPGGVLSFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TP+  +     +     + + +L    
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNLIDKFYSKL---- 409

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                           E+ +   T   +   S++  D    +     D +     I    
Sbjct: 410 -------------FGFEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGD 456

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG 307
            A Y    D    K+ D+             +G ++  GT    ++LP     T+ G DG
Sbjct: 457 GAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFNLPERFDVTYIGEDG 500

Query: 308 KDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++   + G   +W   +AP ++ ++ +   +  C    +
Sbjct: 501 EKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTL---NDECIPYAK 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIK 419
           +I A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I+
Sbjct: 555 EIMAKLQELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEVENKEVNIR 608


>gi|218295928|ref|ZP_03496708.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218243666|gb|EED10194.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 660

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 6/166 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-- 93
            KG+  WLP G    + + A +REEQ + G   ++ P + S +L+  SG Y  Y +    
Sbjct: 270 GKGLVLWLPKGNVIREELIAFMREEQIKRGYQLVTTPHIGSLELYKTSGHYPYYAESQFP 329

Query: 94  -LRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
            +   +R  ++  +  P +      I+    +SYR LP    +    +R E      G+ 
Sbjct: 330 PISFKERGEEEEYLLKPMNCPHHIRIYAHKKRSYRELPLRLAEFGTVYRYEKAGELLGLT 389

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F   DA+ F   PE  K  +  +    L++F  LGLK    R
Sbjct: 390 RVRGFTQDDAHIF-CAPEDVKGEFLGVLDLVLKVFATLGLKDFRAR 434


>gi|227327045|ref|ZP_03831069.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 642

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 147/409 (35%), Gaps = 42/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    +W ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKSYQYQEVKGPFMMDRVMWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P     S E 
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDEM 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+          +      P E   +   I                       L D 
Sbjct: 434 WDRAEADLAAALTENNIEFAYQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +SLP  ++A++ G   +     M    I G+M     
Sbjct: 474 LD-------RAWQCGTV---QLDFSLPGRLNASYVGESNERQVPVMIHRAILGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++     G    +P  +AP +  +INI        D   ++  +L + G  V  D   E+
Sbjct: 524 ILTEEFAG---FFPTWLAPVQAVIINITDSQS---DYVNELTRKLQEAGIRVKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +     L   P  ++ G K V   KV ++ R       M + EVI+
Sbjct: 578 IGFKIREHTLRRVPYMLVCGDKEVETGKVAVRTRRGKDLGSMDVSEVIS 626


>gi|104781106|ref|YP_607604.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123079219|sp|Q1IC15|SYT_PSEE4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|95110093|emb|CAK14798.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 640

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 3/171 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHANGWTVYQVLEQYMRQVQRENGYQEIKTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSENRDYAV-KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           R R F+  DA+ F  T +  K          L ++   G   + M+  + P
Sbjct: 374 RVRGFVQDDAHIF-CTEDQVKKEAADFIKLTLDVYKDFGFTDVAMKLSTRP 423


>gi|86141210|ref|ZP_01059756.1| prolyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85831769|gb|EAQ50224.1| prolyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 490

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +G   +V   S+G+ + R++ A++ +  D  G+
Sbjct: 232 GKALQAGTSHFLGQNFAKAFDVKFATKEGGQEHVWATSWGV-STRLMGALVMTHSDDNGL 290

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I K  +Q+       +++   L  +G  V +DD    + G +F  
Sbjct: 291 VLPPKLAPIQVVIVPIYKGEEQLDSISQVAKELKRELQLLGISVKFDDRDTHKPGWKFNE 350

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +L G PL++ +G + +    VE+  R T  +E +S +++++
Sbjct: 351 YELKGVPLRIAIGPRDLEKRTVELARRDTLTKETVSKDDIVS 392



 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D +R  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 114 EEELIVRPTSETIIWDTYRKWIQSYRDLPIKVNQWANVVRWEMRTRL-FLRTAEFLWQEG 172

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + +     +M   Y
Sbjct: 173 HTAHATKDEAIAEAEQMMRVY 193


>gi|323698513|ref|ZP_08110425.1| threonyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323458445|gb|EGB14310.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 645

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 152/394 (38%), Gaps = 55/394 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  + G   +  P +   +LW +SG YD+Y +E +   
Sbjct: 261 GMSLWHPRGMLLRAILEDFERKEHLKRGYDLVQGPIILKRELWEKSGHYDNY-RENMYFT 319

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +++A    P +      I++  I SYR+LP  ++++ +  R E      G+MR R F 
Sbjct: 320 EIDEQAYGIKPMNCLAHMIIYKRKIMSYRDLPQRYFELGVVHRHEKSGVLHGLMRVRTFT 379

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG------LKSIPMRAESGPIGGDLSHEF 210
             DA+     P+  +     +   Y  I+          L + P ++    IG D   E 
Sbjct: 380 QDDAHLI-CRPDQVEEEILNLIKFYKDIYALFNYEFDVELSTRPAKS----IGTDEDWE- 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             LA  G  Q    K  M + I   +  F                Y    D H   L DS
Sbjct: 434 --LATEGLRQAL-DKSGMPYAINEGDGAF----------------YGPKIDFH---LRDS 471

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAA 327
           +        R  + G I      ++LP      + G DG+ H  V +    +G++     
Sbjct: 472 I-------GRSWQCGTI---QVDFTLPERFDIVYVGEDGERHRPVMIHRAMLGSIERFIG 521

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+     G   +W   +AP +  L+N+        D  +K  A L   G  V  D   E+
Sbjct: 522 VLTEHCAGAYPVW---LAPVQARLLNVT---DAQLDFMKKAEAFLVSKGIRVEADTRNEK 575

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +G +   A +   P  +++G K V    V I+ R
Sbjct: 576 LGYKIREAQVEKVPYMLVIGDKEVEAGCVNIRSR 609


>gi|114328278|ref|YP_745435.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|122326764|sp|Q0BRP0|SYT_GRABC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114316452|gb|ABI62512.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 5/173 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G   W   G +    +   +R  Q   G  E+  P L    LW +SG +D Y +
Sbjct: 256 IQEEAVGSIFWHKKGWRLYRALENYMRRRQIEAGYEEVRTPQLVDRSLWEDSGHWDKYRE 315

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M +   +  +K +   P +      IFR  ++SY+ LP    +     R E      G+
Sbjct: 316 HMFIATVEDEEKTLALKPMNCPCHVQIFRHGLRSYKELPLRMAEFGACHRYEPSGALHGI 375

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP 201
           MR R F   DA+ F +  + +K + +  FV+ L  ++  LG  S  ++    P
Sbjct: 376 MRVRSFTQDDAHIFCMPEQIAKETAD--FVAMLASVYRDLGFDSFRVKFADRP 426


>gi|15605310|ref|NP_220096.1| threonyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789318|ref|YP_328404.1| threonyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237803010|ref|YP_002888204.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804932|ref|YP_002889086.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311401|ref|ZP_05353971.1| threonyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317702|ref|ZP_05358948.1| threonyl-tRNA synthetase [Chlamydia trachomatis 6276s]
 gi|255348963|ref|ZP_05380970.1| threonyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503502|ref|ZP_05381892.1| threonyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|7388284|sp|O84585|SYT_CHLTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123731247|sp|Q3KLB6|SYT_CHLTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6578108|gb|AAC68183.2| Threonyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167848|gb|AAX50856.1| threonyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273232|emb|CAX10145.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274244|emb|CAX11038.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436115|gb|ADH18289.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437044|gb|ADH19214.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/11222]
 gi|296437975|gb|ADH20136.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140477|gb|ADH97235.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 635

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 28/204 (13%)

Query: 16  RDAEIASHKLML------RTGMIHQHSKGIYSWLPLGQKALDNVNAII---REEQNRTGA 66
           RD  +   KL L        GM   H +G+  W           NA++   +    R G 
Sbjct: 236 RDHRVLGTKLDLFSQQTCSAGMPFFHPRGMVVW-----------NALVDYWKRLHQRAGY 284

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            ++  P L + +LW  SG +++Y + M  L  D  D A+   P +       +++ + SY
Sbjct: 285 QQIQTPQLMNRELWEISGHWENYKENMYTLTVDEEDYAI--KPMNCPGCMLYYKTQLHSY 342

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R  P    +I    R EL     G+MR R F   DA+ F LTPE  +     +      +
Sbjct: 343 REFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILNLVSEL 401

Query: 185 FHRLGLK---SIPMRAESGPIGGD 205
           +   GL+    +  R E G IG D
Sbjct: 402 YGTFGLEYHLELSTRPEQGTIGSD 425


>gi|11498158|ref|NP_069384.1| threonyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334363|sp|O29703|SYT_ARCFU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2650076|gb|AAB90685.1| threonyl-tRNA synthetase (thrS) [Archaeoglobus fulgidus DSM 4304]
          Length = 619

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 131/328 (39%), Gaps = 55/328 (16%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +YRNLP   Y++ +  FR E R    G+ R R F M D ++     E +K  +   +   
Sbjct: 301 TYRNLPLKIYELTRYSFRKEQRGELVGLRRLRAFTMPDMHTVAKDMEQAKEEFFNQYRLS 360

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD- 240
           + +   +GL+                       +  E  V  +KDF +     EN +F  
Sbjct: 361 VEVLREIGLEP----------------------EDYEVAVRITKDFYE-----ENREFVH 393

Query: 241 ---DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              DI+    ++E W   +            D+L +   +S   I+V +   +G      
Sbjct: 394 SLVDILKKPILIEMWDHRFFYFVLKFEFNFVDALDKASALSTVQIDVENAERYGI----- 448

Query: 298 MSATFKGADGKDH--YVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISL 351
              TF  +DGK+   Y+   S      RV+ A++E +     +G+  + P  ++P ++ +
Sbjct: 449 ---TFVDSDGKEKHPYILHCSVSGAVERVMYALLEKAKFMLDEGRLPMLPVWLSPTQVRV 505

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +    +   DA  KI   +++ G  V  DD  E +G +   A     P   +VG K +
Sbjct: 506 IPV---SERFVDAAIKIADDIARNGIRVDVDDRNETLGKKIRDAQTEWIPYIAVVGEKEI 562

Query: 412 SDSKVEIKHRLTGI-----REDMSLEEV 434
              K+ +  R         R +MS EE+
Sbjct: 563 ESGKLAVTVRAESTQKEQKRVEMSAEEL 590


>gi|271500480|ref|YP_003333505.1| threonyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270344035|gb|ACZ76800.1| threonyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 642

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 152/413 (36%), Gaps = 50/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                             D  D        D    ++ N+I  ++     A      E  
Sbjct: 432 ------------------DMWD----RAEEDLAAALTENAIPFEYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  +SA++ G + +     M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYVGENNERQVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP +  ++NI        D   ++  +L   G  V  D 
Sbjct: 520 RFIGILTEEFAG---FFPTWLAPVQAVVMNITDSQS---DYVSELTRKLQDAGIRVKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E+IG +     L   P  ++ G K V   KV ++ R       M + EVI 
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVSEVIT 626


>gi|134045917|ref|YP_001097403.1| prolyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|172044143|sp|A4FYA4|SYP_METM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|132663542|gb|ABO35188.1| prolyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 460

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G +   G  ++      F+  DG+  +V    YGI   R +A++I    D KG+
Sbjct: 212 GKTMQIGTVHNLGQNFAKTFELEFETPDGEKDFVYQTCYGISD-RAIASLISVHGDEKGL 270

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  VAP +I LI +  K  +++  D  +++   L K    V  DD   + G ++   +
Sbjct: 271 VIPVDVAPIQIVLIPLLFKGKEEIVMDKIKELNNTL-KSEFRVHLDDRDIRPGRKYNDWE 329

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + G PL++ +G + + + +  I  R TG
Sbjct: 330 IKGVPLRIELGPRDIENGQALIVRRDTG 357



 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP G K       I+R+  + T   E   P L   +L  + G +    ++ +  
Sbjct: 24  KGCGVYLPYGFKIRRYSFEILRKLLDETNHDETLFPMLIPENLLAKEGEHIKGFEDEVFW 83

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                K      +   PT E  M  + +  IK + +LP   YQ+   FR E +    ++R
Sbjct: 84  VTHGGKTPLEVKLALRPTSETTMYYMMKQWIKVHTDLPMKLYQVVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPI-GGDLSH 208
            RE +  K+A++   T E       +    Y   F  + +   I  R E     G D + 
Sbjct: 144 LREIMSFKEAHTAHATKEDCDAQITEALNLYGEFFDEICVPYIISKRPEWDKFPGADYTM 203

Query: 209 EFIVLADTGET----------QVFCSKDFMDFPIPSENTDF 239
            F  +   G+T          Q F     ++F  P    DF
Sbjct: 204 AFDTIYPDGKTMQIGTVHNLGQNFAKTFELEFETPDGEKDF 244


>gi|114559283|ref|XP_001168777.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 3 [Pan
           troglodytes]
          Length = 666

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 167/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 244 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 303

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 304 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 363

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 364 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 423

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G                   C  D  +  
Sbjct: 424 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP-----------------CLWDQAEQV 462

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +     +F +   LNS      A Y    DVH   L D+L        R  + G I    
Sbjct: 463 LKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 506

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF+
Sbjct: 507 LDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQ 563

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I + +  ++  ++A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 564 VVVIPVGSEQEEYAKEAQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVG 620

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 621 QKEQSKRTVNIRTR 634


>gi|149200873|ref|ZP_01877848.1| threonyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149145206|gb|EDM33232.1| threonyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 648

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 9/168 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q R G +E++ P +    LW  SG ++ Y +
Sbjct: 260 MQEEAPGQVFWHPNGWTVYTTLQDYMRRQQRRGGYVEVNTPQVVDRKLWERSGHWEKYQE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEDHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKS 192
             G+MR R F   DA+ F    E    S    F+++L  I+  LG  +
Sbjct: 380 LHGIMRVRGFTQDDAHIF--CTEDQIESETARFITFLSGIYTDLGFPN 425


>gi|302336805|ref|YP_003802011.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301633990|gb|ADK79417.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 476

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++     TF+   G   YV   S+G+ + R+V A+I +  D KG++
Sbjct: 220 KALQAGTSHFLGQNFAKAFDVTFQNDTGSLEYVWATSWGV-STRLVGALIMTHSDDKGLV 278

Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA 393
            P  ++P +  +I I   K  ++V   A  K+Y R+    +V  D    D     G +FA
Sbjct: 279 VPPKLSPVEAVIIPIFRNKNKEEVVGYA-RKLYDRMKDEFRVKLDA---DDSNSPGWKFA 334

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             ++LG P+++ +G + + + K  +  R  G +E + +E V
Sbjct: 335 EWEMLGCPVRIELGPRDMENGKAVLVRRDNGEKEIVDIEAV 375



 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +++  I+SYR+LP    Q     R E R R   +R+ EFL ++ 
Sbjct: 101 EEPLVIRPTSETIIWSMYKKWIQSYRDLPLLINQWANVLRWEKRTRL-FLRTSEFLWQEG 159

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + ++    +M   Y
Sbjct: 160 HTAHATEKEAREETLRMLNVY 180


>gi|153816280|ref|ZP_01968948.1| hypothetical protein RUMTOR_02529 [Ruminococcus torques ATCC 27756]
 gi|317502163|ref|ZP_07960339.1| proline-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088732|ref|ZP_08337642.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846463|gb|EDK23381.1| hypothetical protein RUMTOR_02529 [Ruminococcus torques ATCC 27756]
 gi|316896439|gb|EFV18534.1| proline-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407255|gb|EGG86758.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 480

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 72/148 (48%), Gaps = 1/148 (0%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           +FG  +       +   + + H V   S+G+ + R++ A+I    D  G++ P  +AP +
Sbjct: 235 FFGNSFPDAFDIKYADKNNELHSVYETSWGL-STRIIGAIIMVHGDDSGLVLPPRIAPVQ 293

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             +I I  H +   D   ++   L+K G     DD  +  G +F+  ++LG P ++ +G 
Sbjct: 294 TRVIPIAQHKEGVLDKANELLDALNKAGYRAKIDDSEKSPGWKFSEQEMLGIPTRIEIGP 353

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           K + + +V +  R T  +  ++++E+  
Sbjct: 354 KDIENGQVVVVRRDTREKIVVAIDEITT 381



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG  ++LP G    +N+ + + +    TG   + +P L   + L  E    + +  E+  
Sbjct: 38  KGCLNYLPNGYAIWENIQSDLDKRFKDTGVENVYLPVLIPESLLQKEKDHIEGFAPEVAW 97

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    A+   +     PT E +  D++   ++SYR+LP  + Q    L++    RP    
Sbjct: 98  VTHGGAEPLQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWEKTTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +RSREFL ++ ++   T E ++     M+  Y
Sbjct: 155 LRSREFLWQEGHTIHATYEEAEERTKLMWKVY 186


>gi|114559277|ref|XP_001168750.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 2 [Pan
           troglodytes]
          Length = 635

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 167/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 213 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 272

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 273 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 332

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 333 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 392

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G                   C  D  +  
Sbjct: 393 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP-----------------CLWDQAEQV 431

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +     +F +   LNS      A Y    DVH   L D+L        R  + G I    
Sbjct: 432 LKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 475

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF+
Sbjct: 476 LDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQ 532

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I + +  ++  ++A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 533 VVVIPVGSEQEEYAKEAQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVG 589

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 590 QKEQSKRTVNIRTR 603


>gi|330685703|gb|EGG97342.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 523

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 170/409 (41%), Gaps = 49/409 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +D Y ++M   +
Sbjct: 140 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 199

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +L +  +  M+  P +      ++ +   SYR LP    ++    R E      G+ R R
Sbjct: 200 KLDETEE--MVLRPMNCPHHMMVYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVR 257

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              + D++ F + P+  K  + ++      ++   G +    R              +  
Sbjct: 258 GMTLNDSHIF-VRPDQIKEEFKRVVNMIQDVYKDFGFEDYRFR--------------LSY 302

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDS 270
            D  + + +   D M     +   +  D + L+   +I E   A Y    DV   ++  +
Sbjct: 303 RDPEDKEKYFDDDEMWNKAENMIKEAADELGLSYEEAIGE--AAFYGPKLDV---QVKTA 357

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAV 328
           + + + +S   ++    F    ++ L    T+ G DG+ H   +   G+ +   R VA +
Sbjct: 358 MGKEETLSTAQLD----FLLPERFEL----TYIGQDGEHHRPVVIHRGVVSTMERFVAFL 409

Query: 329 IESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            E +   KG  +P  +AP ++ +I  N+  H     D  + I   L   G  V  DD  E
Sbjct: 410 TEET---KG-AFPTWLAPKQVEIIPVNLDLH----YDYAKSIQDELKSQGVRVEIDDRNE 461

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           ++G +   A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 462 KMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRKYGSQDQETLEKDEFI 510


>gi|269860011|ref|XP_002649729.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|263511674|sp|B7XIA1|SYTC_ENTBH RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220066924|gb|EED44394.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 634

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 4   SKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +K  L   +E  + A+   H+ +   L     H++S G   WLP G    + +   +R+E
Sbjct: 220 NKTLLKEYEEKVQKAKEMDHRKIGKELNLYFFHEYSPGSCFWLPDGVVIYNRLMEFLRKE 279

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +   DLW ESG Y +Y KE +      D A+   P +      IF+S
Sbjct: 280 YIKRGFKEVITPNIFHIDLWKESGHYQNY-KENIYGISGEDFAL--KPMNCPGHCIIFKS 336

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
             +SY+ LP  +    +  R+E      G+ R R F   DA+ F
Sbjct: 337 VERSYKELPLRYADFGVLHRNECSGSLTGLTRVRRFQQDDAHIF 380


>gi|15828654|ref|NP_326014.1| prolyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|14089596|emb|CAC13356.1| PROLYL-TRNA SYNTHETASE (PROLINE--TRNA LIGASE) [Mycoplasma pulmonis]
          Length = 501

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y    +S      FK ++ K  +V   S+G+ + R++ A+I +  D +GI
Sbjct: 246 GKALQSGTTHYLAQNFSEAYDVNFKDSENKKQFVYQTSWGL-STRLIGAIIMTHGDNRGI 304

Query: 339 IWPDSVAPFKISLINIK----AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           I P  VAP +I ++       A  +   +  EKI  +  +V      D   + +G + + 
Sbjct: 305 IIPPFVAPCQIDILAFNPRRSAEIEKFVNQVEKILKKPFRVNV----DRSDKTLGFKASQ 360

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +++ G PL++ +G +   +++V +  R T  ++ +S+ +++
Sbjct: 361 SEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIV 401


>gi|166154796|ref|YP_001654914.1| threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155671|ref|YP_001653926.1| threonyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336072|ref|ZP_07224316.1| threonyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|238687393|sp|B0B8F5|SYT_CHLT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238687442|sp|B0BA34|SYT_CHLTB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|165930784|emb|CAP04281.1| threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931659|emb|CAP07235.1| threonyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 635

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 22/184 (11%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAII---REEQNRTGAIEMSVPTLQSADLWVESGRY 86
           GM   H +G+  W           NA++   +    R G  ++  P L + +LW  SG +
Sbjct: 256 GMPFFHPRGMVVW-----------NALVDYWKRLHQRAGYQQIQTPQLMNRELWEISGHW 304

Query: 87  DSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++Y + M  L  D  D A+   P +       +++ + SYR  P    +I    R EL  
Sbjct: 305 ENYKENMYTLTVDEEDYAI--KPMNCPGCMLYYKTQLHSYREFPLRIAEIGHVHRHELSG 362

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGP 201
              G+MR R F   DA+ F LTPE  +     +      ++   GL+    +  R E G 
Sbjct: 363 ALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILNLVSELYGTFGLEYHLELSTRPEQGT 421

Query: 202 IGGD 205
           IG D
Sbjct: 422 IGSD 425


>gi|126465876|ref|YP_001040985.1| threonyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|166225505|sp|A3DN67|SYT_STAMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126014699|gb|ABN70077.1| threonyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 614

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 151/366 (41%), Gaps = 51/366 (13%)

Query: 89  YGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +G  +  L   N+K ++ Y   H++    + R  I SY+NLPF  +++   +R E R   
Sbjct: 268 FGDRLYELKVDNEKFVLRYAACHQQFA--MLRDWIISYKNLPFGMFEVADSYRLEQRGEL 325

Query: 148 GV-MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            +  R R+F M D            H  N+     ++I   +  K +   A+ G      
Sbjct: 326 NLCFRLRKFYMPDL-----------HILNRDLNEAIKISRIVQDKILEEIAKIG------ 368

Query: 207 SHEFIVLADTGETQVFCSKDFMD--FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             +++ L +        + DF D    I  E    ++   L S++      +    + H 
Sbjct: 369 -RKYVALYN-------VTSDFFDKYRDILIEFVRRENYPVLVSVIPSGIYYWVLNVEYH- 419

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAM 322
             + D+L   + ++   I++G+    G ++++    T+    G+ H+  +    I  G  
Sbjct: 420 --IIDNLNRPREIATFQIDIGN----GERFNI----TYTDEKGEKHHPVIIHTAIIGGIE 469

Query: 323 RVVAAVIESS----HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R +  + +++     +GK    P  +AP ++ +I IK       D  EK+  ++   G  
Sbjct: 470 RFIYTIFDTAALMEKEGKTPYIPTWLAPVQVRIIPIKNE---YLDYAEKVAEKIENAGFR 526

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD GE +G +   A     P  V++G + V  + + ++ R T  ++ M  +E+I   
Sbjct: 527 VDIDDRGESLGKKIRDAGREWIPYIVVIGEREVRSNTINVRIRRTNDQKVMVTDELIRIL 586

Query: 439 SHRFSN 444
                N
Sbjct: 587 EEETKN 592


>gi|255507180|ref|ZP_05382819.1| threonyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525626|emb|CBJ15104.1| threonyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435188|gb|ADH17366.1| threonyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438907|gb|ADH21060.1| threonyl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 635

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 22/184 (11%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAII---REEQNRTGAIEMSVPTLQSADLWVESGRY 86
           GM   H +G+  W           NA++   +    R G  ++  P L + +LW  SG +
Sbjct: 256 GMPFFHPRGMVVW-----------NALVDYWKRLHQRAGYQQIQTPQLMNRELWEISGHW 304

Query: 87  DSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++Y + M  L  D  D A+   P +       +++ + SYR  P    +I    R EL  
Sbjct: 305 ENYKENMYTLTVDEEDYAI--KPMNCPGCMLYYKTQLHSYREFPLRIAEIGHVHRHELSG 362

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGP 201
              G+MR R F   DA+ F LTPE  +     +      ++   GL+    +  R E G 
Sbjct: 363 ALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILNLVSELYGTFGLEYHLELSTRPEQGT 421

Query: 202 IGGD 205
           IG D
Sbjct: 422 IGSD 425


>gi|114152217|sp|Q98R27|SYP_MYCPU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 476

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y    +S      FK ++ K  +V   S+G+ + R++ A+I +  D +GI
Sbjct: 221 GKALQSGTTHYLAQNFSEAYDVNFKDSENKKQFVYQTSWGL-STRLIGAIIMTHGDNRGI 279

Query: 339 IWPDSVAPFKISLINIK----AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           I P  VAP +I ++       A  +   +  EKI  +  +V      D   + +G + + 
Sbjct: 280 IIPPFVAPCQIDILAFNPRRSAEIEKFVNQVEKILKKPFRVNV----DRSDKTLGFKASQ 335

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +++ G PL++ +G +   +++V +  R T  ++ +S+ +++
Sbjct: 336 SEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIV 376


>gi|226944147|ref|YP_002799220.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259516344|sp|C1DF42|SYT_AZOVD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226719074|gb|ACO78245.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 640

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 8/190 (4%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  R  + H  + + G+  W P G      +   +R  Q   G +E+  P 
Sbjct: 237 EAEKRDHRKLGKRLDLFHTQEEAPGMVFWHPNGWTVYQVLEQYMRAVQRENGYLEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y + M      +    I  P +      ++   +KSYR LP    
Sbjct: 297 VVDRVLWEKSGHWANYAENMFTTESESRDYAI-KPMNCPCHVQVYNQGLKSYRELPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   R ++   G +
Sbjct: 356 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEEQMQAESAAFIKLTRQVYADFGFQ 413

Query: 192 SIPMRAESGP 201
            I ++  + P
Sbjct: 414 DIQLKLSTRP 423


>gi|225548931|ref|ZP_03769908.1| threonyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225370534|gb|EEG99970.1| threonyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 581

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 158/409 (38%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE--FI 211
             DA+    T         ++    + ++ + G  +      + P   +G D   E    
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFSNPKAYLSTKPDKSVGNDYDWEMSLK 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL +T            DF +P E            I +   A Y    D+   K+ DSL
Sbjct: 384 VLEET----------LSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSL 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAV 328
               ++S    +          ++LP   + T+   DGK+    M     +G++     +
Sbjct: 419 EREWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P ++ +I +   + +  D   K++ +    G  +  D+   ++
Sbjct: 469 LVEHYGGAFPLW---LSPVQVVIIPV---NNIVEDYAIKVFNKFKNEGIRIKLDNSSSRM 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++         P   I+G +  ++ ++ I+ R       M L+E + +
Sbjct: 523 NAKIREYQAKKIPYMFIIGEREATEERISIRTRTNEQINGMKLDEALKF 571


>gi|149276293|ref|ZP_01882437.1| threonine--tRNA ligase (threonine tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149232813|gb|EDM38188.1| threonine--tRNA ligase (threonine tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 641

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G    + +   +   Q ++G  ++  P +   +L++ SG Y+ YGK+  +  
Sbjct: 262 GLPLWLPKGAALRERLVQFLTRAQAKSGYEQVVTPHIGHKNLYITSGHYEKYGKDSFQPI 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              +  +     P +     +I++   +SY++LP  F +    +R E      G+ R R 
Sbjct: 322 KTPQEGEEFFLKPMNCPHHCEIYKVKPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F   DA+ F   P+  K  + K+    L +F  LG 
Sbjct: 382 FTQDDAHLF-CRPDQVKEEFKKVIDLVLYVFKSLGF 416


>gi|170759289|ref|YP_001788660.1| prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|259511588|sp|B1L224|SYP_CLOBM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169406278|gb|ACA54689.1| proline--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 478

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/357 (18%), Positives = 139/357 (38%), Gaps = 77/357 (21%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G  D        LA+R    +   PT E +  + +   ++SY++LP  + Q    +
Sbjct: 97  WVTHGGDDE-------LAER----LCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVV 145

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           ++    RP    +R+ EFL ++ ++   T E ++    K+   Y R+             
Sbjct: 146 RWEKTTRP---FLRTTEFLWQEGHTIHETKEEAESHSLKILNMYSRLCE----------- 191

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  D+    +V+    E + F   D              D  ++ S++        
Sbjct: 192 -------DMLAMPVVMGKKTEKEKFAGAD--------------DTYTIESLMH------- 223

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                 + ++ G   Y G  +S   +  F   +GK  Y    ++
Sbjct: 224 --------------------DGKALQAGTSHYLGQNFSKAFAIQFSDRNGKLEYPHYTTW 263

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +   R++ A+I    D  G+  P  +AP +  +I +  H +   +  +++  +L+KV  
Sbjct: 264 AV-TTRLIGAIIMVHGDDSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKEKLAKV-V 321

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            V  DD  +  G +++  ++ G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 322 RVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEI 378


>gi|164657235|ref|XP_001729744.1| hypothetical protein MGL_3288 [Malassezia globosa CBS 7966]
 gi|159103637|gb|EDP42530.1| hypothetical protein MGL_3288 [Malassezia globosa CBS 7966]
          Length = 635

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M H  S G   WLP G +  + +   I+ E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 236 MFHDLSPGSCFWLPHGARIYNTLQDFIKSEYRKRGFDEVISPNMYNSKLWETSGHWANYK 295

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            +M  L+  + +     P +      +F S  +SY+ LP  F    +  R+E      G+
Sbjct: 296 DDMFVLS-VDKETFALKPMNCPGHCLMFASRDRSYKELPLRFADFGVIHRNEASGALSGL 354

Query: 150 MRSREFLMKDAYSF 163
            R R F+  DA+ F
Sbjct: 355 TRVRRFVQDDAHIF 368


>gi|167836852|ref|ZP_02463735.1| threonyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 635

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + S G+  W P G      V   +R   +  G +E+  P +    LW  SG + +Y +
Sbjct: 255 LQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 371 GLMRVRGFVQDDAHIF 386


>gi|121610033|ref|YP_997840.1| threonyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|166225514|sp|A1WMG5|SYT_VEREI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121554673|gb|ABM58822.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Verminephrobacter eiseniae EF01-2]
          Length = 639

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +HS G   W P G      V   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRDNGYQEVKGPQILDQGLWEKTGHWDKYRE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M +  +++ D A+   P +      IF+  IKSYR+LP  F +     R+E      G+
Sbjct: 315 NMFVTESEKRDYAL--KPMNCPGHIIIFKQGIKSYRDLPLRFGEFGQCHRNEPSGGLHGI 372

Query: 150 MRSREFLMKDAYSF 163
           MR R F   D + F
Sbjct: 373 MRVRAFTQDDGHIF 386


>gi|42781481|ref|NP_978728.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|42737404|gb|AAS41336.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 640

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYKYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|53719558|ref|YP_108544.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|53725296|ref|YP_102787.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76810857|ref|YP_333290.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121600801|ref|YP_992866.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124385818|ref|YP_001026205.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126441516|ref|YP_001058752.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|126449349|ref|YP_001080524.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126453502|ref|YP_001066005.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134282197|ref|ZP_01768902.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|167003090|ref|ZP_02268880.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167719848|ref|ZP_02403084.1| threonyl-tRNA synthetase [Burkholderia pseudomallei DM98]
 gi|167738851|ref|ZP_02411625.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816071|ref|ZP_02447751.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167824445|ref|ZP_02455916.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167845979|ref|ZP_02471487.1| threonyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167894556|ref|ZP_02481958.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167902959|ref|ZP_02490164.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167911196|ref|ZP_02498287.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167919220|ref|ZP_02506311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217423341|ref|ZP_03454842.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|226199711|ref|ZP_03795264.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237812016|ref|YP_002896467.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238562605|ref|ZP_04610138.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242317788|ref|ZP_04816804.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254177492|ref|ZP_04884147.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254180004|ref|ZP_04886603.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254188582|ref|ZP_04895093.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197889|ref|ZP_04904311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254199739|ref|ZP_04906105.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254206061|ref|ZP_04912413.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|254259413|ref|ZP_04950467.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297839|ref|ZP_04965292.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358432|ref|ZP_04974705.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|73919776|sp|Q62KI2|SYT_BURMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919777|sp|Q63TM2|SYT_BURPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771913|sp|Q3JT13|SYT_BURP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223324|sp|A3MJT8|SYT_BURM7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223325|sp|A2S2N6|SYT_BURM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223326|sp|A1V3R3|SYT_BURMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223327|sp|A3NUI4|SYT_BURP0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223328|sp|A3N8T1|SYT_BURP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52209972|emb|CAH35944.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|52428719|gb|AAU49312.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76580310|gb|ABA49785.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121229611|gb|ABM52129.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124293838|gb|ABN03107.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126221009|gb|ABN84515.1| threonine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|126227144|gb|ABN90684.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242219|gb|ABO05312.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134246235|gb|EBA46324.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|147749335|gb|EDK56409.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753504|gb|EDK60569.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|148027559|gb|EDK85580.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157806992|gb|EDO84162.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936261|gb|EDO91931.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698531|gb|EDP88501.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169654630|gb|EDS87323.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184210544|gb|EDU07587.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217393199|gb|EEC33220.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|225928297|gb|EEH24331.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237505158|gb|ACQ97476.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238522290|gb|EEP85735.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242141027|gb|EES27429.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243061341|gb|EES43527.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254218102|gb|EET07486.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 635

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W P G      V   +R   +  G +E+  P +    LW  SG + +Y +
Sbjct: 255 IQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAGYLEIKTPMIMDRSLWEASGHWQNYRE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 370

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 371 GLMRVRGFVQDDAHIF 386


>gi|114769524|ref|ZP_01447150.1| threonyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114550441|gb|EAU53322.1| threonyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 649

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    +   +R  Q++ G +E++ P +    LW  SG ++ Y +
Sbjct: 260 MQEEAPGQIFWHPNGWKIYTALQDYMRRMQDKNGYVEVNTPQVVDRKLWEASGHWEKYQE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEDHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP 201
             G+MR R F   D + F    E    S  K+++ +L  ++  LG     ++    P
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CSEEQIESETKIYIDFLSNVYKDLGFNEFKVKFSDRP 434


>gi|319408458|emb|CBI82113.1| Threonyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 659

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 100/454 (22%), Positives = 177/454 (38%), Gaps = 59/454 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + R   + H  + S G+  W P G K   N+ + +R   
Sbjct: 233 KAYLHTLEE----AEKRDHRRLGREMDLFHFQEESPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M +    AD  D   IY   P +      
Sbjct: 289 DDHKYDEVNAPQVLDKSLWEISGHWGWYKENMFQTTPAADDWDDQCIYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +    N
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGIVHRYEPSGSLHGLMRVRSFTQDDAHIFCTDEQLADECLN 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            +    L  +   G + I ++  + P   +G D            E    C         
Sbjct: 409 -INDLILSTYADFGFEEISLKFSTRPEKRVGSD------------ELWDHCE-------- 447

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                  D ++S+   +E+ +     TS +  E  F   P+ +      I  G  +  GT
Sbjct: 448 -------DIMLSVLKTIEKKSEGRIKTSILPGEGAFYG-PKFEYTLKDAI--GREWQCGT 497

Query: 293 K---YSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               ++LP    A +   D  K   V +    +G+M     ++  +  G   +W   +AP
Sbjct: 498 TQVDFNLPERFGAFYIDKDSEKRQPVMIHRAILGSMERFLGILIENFSGHMPLW---LAP 554

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ +  I +      +  EKI  +L  +G     D   E+I  +     L   P+ ++ 
Sbjct: 555 QQVVVAPITSE---ANEYAEKITKKLKAIGLSATADLRNEKINYKIREHSLQKVPVILVC 611

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G +    + V ++   +  +  +S+EEV+   S+
Sbjct: 612 GKRESETNSVSMRRLGSTDQTVLSIEEVMKQLSN 645


>gi|238895235|ref|YP_002919970.1| threonyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238547552|dbj|BAH63903.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 642

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 434 ------WDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G + +     M    I G++  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPQRLSASYVGENNERQVPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWIAPVQVVVMNITDSQA---EYVNELTRKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVNEVI 625


>gi|152970729|ref|YP_001335838.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|330009686|ref|ZP_08306560.1| threonine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|150955578|gb|ABR77608.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328534774|gb|EGF61330.1| threonine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 622

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 355 RVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 413

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 414 ------WDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G + +     M    I G++  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPQRLSASYVGENNERQVPVMIHRAILGSLER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWIAPVQVVVMNITDSQA---EYVNELTRKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVNEVI 605


>gi|226310645|ref|YP_002770539.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226093593|dbj|BAH42035.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 488

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G K++      F   D +  YV   S+G  + R++ ++I    D +G+
Sbjct: 225 GKAVQAGTSHYLGDKFARGFEIKFLDRDNQFKYVHTTSWGT-STRLIGSMIMVHGDDRGL 283

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           + P  +AP ++ +I +   K  ++V  +A + ++  +   G  V  D   E  G +F   
Sbjct: 284 VLPPRMAPTQVIMIPVGPMKLREKVM-EAFDPLFDEIKAAGVRVRADLREETPGWKFNEW 342

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++ G PL++ +G + V + +V +  R TG +  +SLE +
Sbjct: 343 EMRGVPLRLELGPRDVENGQVILARRDTGEKVTVSLEGI 381


>gi|323526736|ref|YP_004228889.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383738|gb|ADX55829.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 635

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 15/164 (9%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H      +F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGH----VQVFNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIF 386


>gi|153824261|ref|ZP_01976928.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|126518216|gb|EAZ75441.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
          Length = 345

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 12/205 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 143 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 202

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 203 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 261

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 262 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSD-- 318

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI 232
                + D  E  +  S   MD P 
Sbjct: 319 ----EIWDKSEQALIDSLKAMDIPF 339


>gi|88810665|ref|ZP_01125922.1| threonyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88792295|gb|EAR23405.1| threonyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 641

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 152/410 (37%), Gaps = 74/410 (18%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    +   +R + +  G  E+  P L    LW  SG +  +  
Sbjct: 255 LQEEAPGMVFWHPNGWRVYLLLQDYLRAKLDAHGYREVRTPELVDRSLWERSGHWQKFRA 314

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +M    +++ D A+   P +      IF   +KSYR+LP    +     R+E      G+
Sbjct: 315 DMFTTESEKRDYAV--KPMNCPCHVQIFNQGLKSYRDLPLRLAEFGNCHRNEASGTLHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
           MR R F+  DA+ F  T E  +            ++   G   + +   + P   +G D 
Sbjct: 373 MRVRNFVQDDAHIF-CTEEQIQSEVAGFLDLAEAVYRDFGFDEVIVALSTRPEQRVGAD- 430

Query: 207 SHEFIVLADTGET---QVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 L D  E    Q   ++  +D+ + P E   +   I L+                
Sbjct: 431 -----ALWDKAEQALDQALRARR-LDWEVKPGEGAFYGPKIELS---------------- 468

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKD------HY 311
               + DSL             G ++  GT    +S+P  + A +   DG        H 
Sbjct: 469 ----MKDSL-------------GRVWQCGTMQVDFSMPQRLGAQYVAEDGARLVPVMLHR 511

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
              GS+     R +  +IE      G  WP  +AP +  ++NI           EK   R
Sbjct: 512 AIFGSF----ERFIGVLIEHY----GGAWPVWLAPIQAVVLNITDRQGAYASGIEK---R 560

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           L++ G   + D   E+IG +     L   P  +IVG +      V ++ R
Sbjct: 561 LAEHGFRAYGDLRNEKIGFKIREHTLQKVPYLLIVGERERESMTVAVRTR 610


>gi|220928797|ref|YP_002505706.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999125|gb|ACL75726.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 635

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   ++P G    + +    R E  + G  E+  P + + +LW+ SG +D+Y   M  +A
Sbjct: 261 GFPFFMPKGMVLRNLLEDYWRSEHKKAGYQEIKTPVILNKELWLRSGHWDNYKNNMYTVA 320

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            D  D A+   P +      +F+  + SYR+LP    ++ L  R EL     G+MR R F
Sbjct: 321 IDEQDCAI--KPMNCPGGILVFKRKLHSYRDLPQRMGELGLVHRHELSGALHGLMRVRCF 378

Query: 156 LMKDAYSFDLTPE 168
              DA+ F +TPE
Sbjct: 379 TQDDAHIF-MTPE 390


>gi|307298932|ref|ZP_07578734.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915357|gb|EFN45742.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 648

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 159/412 (38%), Gaps = 43/412 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           ++++ G+  +LP G + L+ +    RE+    G  E+S P + S  LW  SG +D Y ++
Sbjct: 264 YEYAPGMPVFLPKGTEMLNQLLQFSREKHVEDGYREVSTPQIMSDALWRTSGHWDHY-RD 322

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +   ++ D+     P +      +++S   SYR+LP   ++     R E      G+ R
Sbjct: 323 NMYFTEKEDQQFAVKPMNCPGHIIVYKSSSVSYRDLPMKLFEFGKVHRYERSGVLHGLFR 382

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE-- 209
            R F+  DA+ F  T E  +     +     +I+     +    RAE      D   E  
Sbjct: 383 VRGFVQDDAHIF-CTREQIQQEIMGVIDFVQKIYSPFNFE---YRAELSTRPEDYMGEVE 438

Query: 210 -FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            + +     E  +   K  M+F +   +  F                Y    D H   + 
Sbjct: 439 LWDIATKALEDSLLAKK--MEFKVNEGDGAF----------------YGPKIDYH---IK 477

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           DSL    + +   ++      FG KY  P +  ++      H    GS      R +  +
Sbjct: 478 DSLGREWQCATIQLDFMMPERFGIKYVGPDNEEYQPV--MIHRAIFGS----VERFMGIL 531

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE         +P  +AP ++S+I I        +  E + A L   G  V  DD  +  
Sbjct: 532 IEHFAGA----FPAWLAPTQVSVIPIADRHA---EYAESVAAELKSRGFRVEVDDRQKST 584

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             +   A L+  P  +IVG +   D  + ++ R       ++L+E ++  S 
Sbjct: 585 NYKIREAQLMKVPYMIIVGDREKEDGTISVRLRSEKDLGSIALQEFMDKLSQ 636


>gi|229173066|ref|ZP_04300617.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228610399|gb|EEK67670.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 639

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYKYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|224532379|ref|ZP_03673009.1| threonine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224512686|gb|EEF83057.1| threonine--tRNA ligase [Borrelia burgdorferi WI91-23]
          Length = 581

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 79/411 (19%), Positives = 163/411 (39%), Gaps = 55/411 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE--FI 211
             DA+    T         ++    + ++ + G  ++     + P   +G D   E    
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFSNLKAYLSTKPDKSVGNDSDWEMSLK 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL +T            DF +P E            I +   A Y    D+   K+ DSL
Sbjct: 384 VLEET----------LSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSL 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAV 328
               ++S    +          ++LP   + T+   DGK+    M     +G++     +
Sbjct: 419 EREWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P ++ +I +   + +  D   K++ +    G  +  D+   ++
Sbjct: 469 LVEHYGGAFPLW---LSPVQVVIIPV---NNIVEDYAIKVFNKFKNGGIRIKLDNSSSRM 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVI 435
            ++         P   I+G +  ++ ++ I+ R    + GI+ D +L+ ++
Sbjct: 523 NAKIREYQAKKIPYMFIIGEREATEERISIRTRTNEQINGIKLDEALKFIL 573


>gi|71394075|gb|AAZ32114.1| prolyl-tRNA synthetase [uncultured euryarchaeote Alv-FOS5]
          Length = 472

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + R +++        K+S      ++  +G+     + S+GI + R +AA++    D +G
Sbjct: 216 TGRTLQIATSHRLSQKFSEVFDVKYEDENGEQKLAYLTSHGI-SERAIAALVGIHGDNRG 274

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           ++ P   AP ++ ++ I      +QV   A E +Y +L K    V  DD     G +F  
Sbjct: 275 LVLPPRFAPVQVVIVPILYKGKENQVMEKAME-VYEKL-KYNWRVELDDSDSNPGDKFYY 332

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSNN 445
            +L G P+++ +G + V +  V +  R T  +  + +EE+   IN  +    NN
Sbjct: 333 WELRGVPIRIEIGPRDVENGVVTLARRDTKEKTQVKMEELEDKINRLAEEIHNN 386



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 8/191 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG+  W P G K    V  ++RE    TG  E+  PTL       + G +   +G E+  
Sbjct: 29  KGMLVWRPNGFKIRKYVTDLLRELLEETGHQEVLFPTLIPETALNKEGEHIRGFGSEVYW 88

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E  M  +F   I+S+ +LP   +QI   FR E +    ++R
Sbjct: 89  ITHGGETPLDVKLALRPTSETAMYPMFALWIRSHADLPLRVFQIVSVFRYETKHTRPLIR 148

Query: 152 SREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
            RE    K+A+    T E ++     +   Y   +  LG+  + ++  S     G D + 
Sbjct: 149 VREVSTFKEAHCALKTEEEAEKEMRIIDGVYKAFWDELGIPFVRVQRPSWDKFAGADKTI 208

Query: 209 EFIVLADTGET 219
            +  +  TG T
Sbjct: 209 AYDTIMPTGRT 219


>gi|257139340|ref|ZP_05587602.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 593

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W P G      V   +R   +  G +E+  P +    LW  SG + +Y +
Sbjct: 250 IQEEAPGMVFWHPKGWTLWQRVEQYMRRRLDAAGYLEIKTPMIMDRSLWEASGHWQNYRE 309

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F+  ++SYR+LP  + +     R+E      
Sbjct: 310 NMFTTESEKRDYAIKPMNCPGH----VQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALH 365

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 366 GLMRVRGFVQDDAHIF 381


>gi|294508832|ref|YP_003572891.1| threonyl-tRNA synthetase, class IIa [Salinibacter ruber M8]
 gi|294345161|emb|CBH25939.1| threonyl-tRNA synthetase, class IIa [Salinibacter ruber M8]
          Length = 656

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 91/450 (20%), Positives = 161/450 (35%), Gaps = 67/450 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +L L T    Q   G+  WLP G      +  ++++EQ + G   +  P + 
Sbjct: 248 RDHRKLGTELNLFTFDTEQVGPGLPMWLPKGTTLRQTLQEVLQQEQVKQGYKPVCTPHIG 307

Query: 76  SADLWVESGRYDSYGKE----MLRLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLP 129
             DL+  SG Y  Y  +    M+     + +   Y   P +      I+++   SYR+LP
Sbjct: 308 RLDLYRTSGHYPHYEDDQFPPMVTGEGDDGEEDGYLLKPMNCPHHVKIYQNDHHSYRDLP 367

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +    +R E      G+ R R F   DA+ F  TP   K  +  +    L++   L
Sbjct: 368 VRLAEFGTVYRQEQTGELGGLTRVRGFTQDDAHIF-CTPAQVKDEFKSVIDLTLKVLDAL 426

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G +    +              I L D  +T+ +  +D +                    
Sbjct: 427 GFEEFEAQ--------------ISLRDPDDTEKYTGRDAL-------------------- 452

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGT---KYSLP 297
              WT       +   E   D+  E    +  G +        +G  +  GT    Y+LP
Sbjct: 453 ---WTRAEQDIREAVAETDLDAYEEPGEAAFYGPKLDFMVEDALGRAWQLGTIQVDYNLP 509

Query: 298 MSATFKGADGKDHY---VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                   D  D     V +     G++ R +  +IE      G  +P  +AP ++ +I 
Sbjct: 510 ERFELTYVDEHDERKRPVMIHRAPFGSLERFIGVLIEHC----GGNFPTWLAPTQVQIIP 565

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +   D V  D  +++ A L      V  D   E +G +   A+    P  ++VG      
Sbjct: 566 V-GDDFV--DYAQEVAATLRAEDVRVEIDTSDETVGYKIREAETQKVPYMLVVGGDEEEA 622

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V ++    G +  +S+++ ++     F 
Sbjct: 623 GTVSVRSHADGPQGTVSVQDFLDRTGPEFE 652


>gi|227111545|ref|ZP_03825201.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 642

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 147/409 (35%), Gaps = 42/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    +W ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKSYQYQEVKGPFMMDRVMWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P     S E 
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDEM 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+          +      P E   +   I                       L D 
Sbjct: 434 WDRAEADLAAALTENNIEFAYQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +SLP  ++A++ G   +     M    I G+M     
Sbjct: 474 LD-------RAWQCGTV---QLDFSLPGRLNASYVGESNERQVPVMIHRAILGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++     G    +P  +AP +  +INI        D   ++  +L + G  V  D   E+
Sbjct: 524 ILTEEFAG---FFPTWLAPVQAVIINITDSQS---DYVNELTRKLQEAGIRVKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +     L   P  ++ G K V   KV ++ R       M + EVI+
Sbjct: 578 IGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVSEVIS 626


>gi|209516675|ref|ZP_03265528.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209502950|gb|EEA02953.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 635

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 162/424 (38%), Gaps = 53/424 (12%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H      +F  
Sbjct: 287 AGYLEIKTPLIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGH----VQVFNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS--YNKM 177
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S  +N +
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNTL 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +S  R F   G  ++ ++    P     + E    A+ G  +   +       +P E  
Sbjct: 403 AMSVYRDF---GFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEG- 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                           A Y    + H   + D+L  + +     +++      G +Y   
Sbjct: 459 ----------------AFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLGAEY--- 496

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   + +   + +    +G+M     ++   H G    W   +AP ++ ++NI A 
Sbjct: 497 ----VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNI-AE 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q   +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V 
Sbjct: 549 SQA--EYAQLLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVA 606

Query: 418 IKHR 421
           ++ R
Sbjct: 607 VRAR 610


>gi|317491930|ref|ZP_07950364.1| threonyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920051|gb|EFV41376.1| threonyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 645

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 153/412 (37%), Gaps = 50/412 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRVKLKEYDYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNSCIKMVYDMYSIFGFEKIAVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                + D  E                   D  + +  N I  ++     A      E  
Sbjct: 432 ----EIWDRAE------------------EDLAEALKENGIPFEYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  ++A++ G + +     M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLNASYVGENNERLVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D 
Sbjct: 520 RFIGILTEEYAG---FYPTWLAPVQVQVMNIT---DAQADYVDELTKKLQAAGIRAKSDL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGTMDVNEVI 625


>gi|91776355|ref|YP_546111.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
 gi|123254150|sp|Q1GZR7|SYT_METFK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91710342|gb|ABE50270.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
          Length = 635

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 146/401 (36%), Gaps = 56/401 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      V   +R      G  E+  PT+    +W +SG + +Y  
Sbjct: 255 MQDEAPGMVFWHPRGWVIWQEVEQYMRNMFREFGYQEVRTPTIMDRVMWEKSGHWQNYHD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   A  N    +  P +      IF S + SYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTASENRDYAV-KPMNCPGHIQIFNSTLHSYRDLPLRLAEFGSCHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  K       V   + +   G   + ++  + P   +G D +
Sbjct: 374 RVRGFTQDDAHIF-CTEDQVKDEVADFIVMLYKAYKDFGFNEVLVKLSTRPEKRVGTDEA 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +    A      V   ++ +DF + P E   +   I                       
Sbjct: 433 WDKAEEA----LAVALRQNNLDFELQPGEGAFYGPKIEFT-------------------- 468

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
           L DSL             G ++  GT    ++LP  + A +   D  + H V +    +G
Sbjct: 469 LKDSL-------------GRLWQCGTIQLDFNLPERLGAEYVDEDNSRKHPVMLHRAIVG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +M     ++  ++ G    W   +AP +  ++NI        D    + A L K G  V 
Sbjct: 516 SMERFLGILIENYAGAMPAW---LAPVQAMVLNISDGQA---DYVSSVVAELRKNGFRVD 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   E+I  +     L   P  +I G + +   +V ++ R
Sbjct: 570 SDLRNEKITYKIREHSLQKLPYLLIAGEREMQTGQVAVRTR 610


>gi|224584156|ref|YP_002637954.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254783535|sp|C0Q647|SYT_SALPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|224468683|gb|ACN46513.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 642

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSPFGFEKIVVKLSTRPDKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 432 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G D +     M    I G+M  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI            ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVVMNITDSQS---GYVNELTQKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|206580341|ref|YP_002237974.1| threonyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288934884|ref|YP_003438943.1| threonyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|290509026|ref|ZP_06548397.1| threonyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|238065116|sp|B5XQC6|SYT_KLEP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|206569399|gb|ACI11175.1| threonyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288889593|gb|ADC57911.1| threonyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|289778420|gb|EFD86417.1| threonyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 642

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 434 ------WDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA++ G + +     M    I G++  
Sbjct: 471 YDCLD-------RAWQCGTV---QLDFSLPQRLSASYVGENNERQVPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWIAPVQVVVMNITDSQA---EYVNELTRKLQNAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M + EVI
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVSEVI 625


>gi|163790751|ref|ZP_02185177.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873931|gb|EDP68009.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 645

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/420 (20%), Positives = 167/420 (39%), Gaps = 52/420 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + +   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 262 GLPFWLPKGATIRRTIERYIVDREISLGYQHVYTPIMADVNLYKTSGHWDHYHEDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ + SYR LP    ++    R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMVYKNDVHSYRELPIRIAELGQMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D ++F + P+  +  + +     L ++    +     R +   P   +  ++   + 
Sbjct: 382 TLNDGHTF-VRPDQIEEEFKRTLELMLAVYGDFNITDYRFRLSYRDPNNTEKYYDDDAMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  +T +  + D M         D+ +        E   A Y    DV  +         
Sbjct: 441 EKAQTMLKAAMDDMGL-------DYFE-------AEGEAAFYGPKLDVLVK--------- 477

Query: 275 KRVSARGIE-----VGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAM-RVVA 326
              +A GIE     +   F    ++ L    T+ G DG++++  V +    +  M R VA
Sbjct: 478 ---TAIGIEETLSTIQLDFLLPERFDL----TYVGEDGENNHRPVVIHRGIVSTMERFVA 530

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            +IE     KG  +P  +AP + ++I  N+  H     D   +I  ++ ++G  V  D+ 
Sbjct: 531 YLIEEY---KG-AFPTWLAPVQATIIPVNLDMH----TDYAYEIKKQMERIGMRVEVDER 582

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E++G +   +     P Q++VG   V D+ V ++         ++L E +   S    N
Sbjct: 583 NEKMGYKIRASQTQKIPYQLVVGDSEVQDNTVAVRKYGEKATVTINLSEYLETVSKEIEN 642


>gi|18977665|ref|NP_579022.1| prolyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|74580758|sp|Q8U1C4|SYP_PYRFU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18893393|gb|AAL81417.1| prolyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 479

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 81/168 (48%), Gaps = 3/168 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   ++   +  ++  DG   YV   ++G+   R++AAVI    D +G+
Sbjct: 220 GRTLQIGTMHNYKQNFAKAYNILYEKEDGTHDYVHQTTFGMSE-RLLAAVIAIHGDDRGM 278

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P ++AP ++ ++ I  K  ++       +I   L   G  V  D   ++ G +F   +
Sbjct: 279 VLPPTIAPIQVVIVPIPKKGSEEEVYSYAREIEEELKLAGIRVHLDLRDKRPGWKFYDWE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L G P+++ VG +  ++  V +  R    +  +S EE+++     F +
Sbjct: 339 LKGVPVRIEVGPRDAAEKTVVLARRDKLEKITVSREELVDKVRELFDD 386



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  WLP G K + N+   I EE  RT   E+  P L    +   E+     +  E+  
Sbjct: 32  KGMNVWLPYGLKIMKNIEKFIHEEMERTDHQEVLFPALIPETEFQKEAEHIAGFEGEVFW 91

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  ++  PT E  M  +F   I+S+ +LPF  YQI   +R E +    ++R
Sbjct: 92  VTHAGHEPLDVRLVLRPTSETAMYSMFALWIRSHADLPFKVYQIVNVYRYETKHTRPLIR 151

Query: 152 SRE 154
            RE
Sbjct: 152 VRE 154


>gi|323137534|ref|ZP_08072611.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322397160|gb|EFX99684.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 643

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G   W P G      + + +R  Q   G  E++ P +    LW  SG + +Y + 
Sbjct: 257 QEEGPGAIFWHPKGWTLFQTLVSYMRRRQKAAGYTEVNTPQVLDRALWETSGHWQTYREN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      +++     P +      IF++ +KSYR+LP    +  +  R E      G+MR
Sbjct: 317 MFVTKTEDERIFALKPMNCPGHVQIFKNGLKSYRDLPVKIAEFGVVHRYEPSGALHGMMR 376

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 377 VRAFTQDDAHIF 388


>gi|297748711|gb|ADI51257.1| Threonyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749591|gb|ADI52269.1| Threonyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 660

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 22/184 (11%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAII---REEQNRTGAIEMSVPTLQSADLWVESGRY 86
           GM   H +G+  W           NA++   +    R G  ++  P L + +LW  SG +
Sbjct: 281 GMPFFHPRGMVVW-----------NALVDYWKRLHQRAGYQQIQTPQLMNRELWEISGHW 329

Query: 87  DSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++Y + M  L  D  D A+   P +       +++ + SYR  P    +I    R EL  
Sbjct: 330 ENYKENMYTLTVDEEDYAI--KPMNCPGCMLYYKTQLHSYREFPLRIAEIGHVHRHELSG 387

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGP 201
              G+MR R F   DA+ F LTPE  +     +      ++   GL+    +  R E G 
Sbjct: 388 ALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILNLVSELYGTFGLEYHLELSTRPEQGT 446

Query: 202 IGGD 205
           IG D
Sbjct: 447 IGSD 450


>gi|289163681|ref|YP_003453819.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
 gi|288856854|emb|CBJ10665.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
          Length = 639

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 48/393 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 259 APGMVFWHPKGWTIYQELERYMRHRLADFGYQEIRTPQLVDRVLWEKSGHWANFRDEMF- 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +  ++     P +      +F   +KSYR+LP  F +     R E      G+MR R 
Sbjct: 318 VTETENRHYAVKPMNCPCHVQVFNQGLKSYRDLPLRFSEFGNCHRCEPSGSLHGLMRVRN 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +  DA+ F  T +  +     M      ++   G   I  R    P     S E    A
Sbjct: 378 MVQDDAHIF-CTEDQIQSEVAMMLELVQSVYTDFGFNEIKYRLALRPEKRVGSDEVWDKA 436

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    Q    ++      P E   +   I  +                    L D L   
Sbjct: 437 EAALKQAMKERNIEWVDAPGEGAFYGPKIECS--------------------LSDCL--- 473

Query: 275 KRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
                     G I+  GT    +S+P  + A +   DG K   V +    +G+      +
Sbjct: 474 ----------GRIWQCGTIQVDFSMPGRLDAIYIAEDGSKQTPVMLHRAILGSFERFMGI 523

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + GK  +W   ++P +  ++ I        +  EK+   L K G    +D   E+I
Sbjct: 524 LIEHYAGKLPLW---LSPVQAIIMTISEKQS---EYAEKVTQILQKNGIRANFDLRNEKI 577

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G +     L   P  +++G K V   +V ++ R
Sbjct: 578 GFKIREHTLQKIPYLLVIGDKEVESGQVAVRTR 610


>gi|119953497|ref|YP_945706.1| threonyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|254783510|sp|A1R0E4|SYT_BORT9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119862268|gb|AAX18036.1| threonyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 583

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 83/414 (20%), Positives = 160/414 (38%), Gaps = 46/414 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G +    +    REE  + G   +  P +  + LW  SG  D Y + M    
Sbjct: 205 GLIFFHPSGARIRALIEDFWREEHFKNGYDILFTPHVGKSWLWETSGHLDFYKESMFEKM 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G MR R F 
Sbjct: 265 EMDKSNYYVKPMNCPFHIAIYNTGRHSYRDLPFRWAELGTVYRYEKVGALHGTMRVRGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLA 214
             DA+    T +  K    ++    L ++++ G  ++     + P    GD         
Sbjct: 325 QDDAHII-CTYDQVKFEVQEVLRFALYMWNKFGFTALKAYLSTKPEKSVGD--------- 374

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E     S   +   + +   D+D       I E   A Y    D+   K+ DSL   
Sbjct: 375 ---EDDWIMSVKVLKEALINLGIDYD-------IDEGGGAFYGPKIDL---KIIDSLGRE 421

Query: 275 KRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIES 331
            ++S    +          ++LP     T+   DGK+    M     +G++     ++  
Sbjct: 422 WQMSTIQFD----------FNLPARFKMTYTAEDGKERQPFMIHRALLGSIERFFGILVE 471

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGS 390
            + G   +W   +AP ++ +I +   + +  +   ++ +R  K G  +  D D   ++ +
Sbjct: 472 HYGGAFPVW---LAPLQVVIIPV---NNIVEEYALEVLSRFKKEGIRIKLDNDCNMRMNA 525

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +         P   IVG K V + K+ I+ R       + L+E + +   + SN
Sbjct: 526 KIRQYQSQKVPYMFIVGEKEVVEGKISIRTRTNEQINGLELKEALEFVKLKVSN 579


>gi|229496081|ref|ZP_04389803.1| threonyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316977|gb|EEN82888.1| threonyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 672

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 151/409 (36%), Gaps = 71/409 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G +    +   +++ Q   G  ++  P + + +L+  SG Y  YG +  R  
Sbjct: 284 GLPLWLPRGTRLRLRLEDFLKKIQKDFGYQQVMTPHIGNIELYKTSGHYAKYGADSFRPI 343

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              +  +  +  P +     +I+R    SYR+LP    +    +R E      G+ R R 
Sbjct: 344 TTPQEGEEFMLKPMNCPHHCEIYRIKPHSYRDLPVRLAEFGTVYRYEQSGELHGLTRVRG 403

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  TPE  K  + K+      IF  L  ++   +              I L 
Sbjct: 404 FTQDDAHIF-CTPEQVKDEFLKVMDIIFIIFKALKFENFEAQ--------------ISLR 448

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D    + +   D                       E W     A  +   EK   ++ E 
Sbjct: 449 DKNNREKYIGSD-----------------------ENWDRAEQAIIEACQEKGLPAVVEY 485

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G D + H  V +     G
Sbjct: 486 GEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFDLEYTGEDNQKHRPVMIHRAPFG 545

Query: 321 AM-RVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRD--ACEKIYARLSKV 375
           +M R VA +IE +  G+  +W  PD V    I   N   +    RD  A   I A +   
Sbjct: 546 SMERFVAVLIEHTA-GRFPLWLTPDQVVVLPIGE-NFNEYAYKVRDFLANHDITATV--- 600

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                 DD  E+IG +    +L   P  +IVG++   +  V ++ +  G
Sbjct: 601 ------DDRNEKIGRKIRDNELKRIPYLLIVGAQESENETVSVRKQGEG 643


>gi|198425233|ref|XP_002123203.1| PREDICTED: similar to novel prtoein similar to vertebrate
           threonyl-tRNA synthetase (TARS, zgc:92586) [Ciona
           intestinalis]
          Length = 630

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 83/413 (20%), Positives = 163/413 (39%), Gaps = 41/413 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + + + I+EE  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 230 FHELSPGSCFFFPRGAFIYNTLISFIKEEYRKRGFEEVVSPNIYNSKLWMTSGHWQHYDQ 289

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +   +      P +      +F    +S+R LP  F    +  R+EL     G+ 
Sbjct: 290 NMFSFSVEKE-TFALKPMNCPGHCLMFSHRSRSWRELPIRFADFGVLHRNELSGALTGLT 348

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHE 209
           R R F   DA+ F   PE  K            ++   G    + +        GD    
Sbjct: 349 RVRRFQQDDAHIF-CRPEQIKDEMRGALNFLKAVYDTFGFSFKLFLSTRPEKFLGDPG-- 405

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              + D  E Q+   +  ++F  P +    D             A Y    D+   ++ D
Sbjct: 406 ---MWDDAEKQL--EECLVEFDHPWKLNPGDG------------AFYGPKIDI---QIMD 445

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           +L    + +   ++      F   Y      T +G D K   V +    +G++  + A++
Sbjct: 446 ALRRPHQCATIQLDFQLPIRFNLNY-----VTGEG-DEKKRPVIIHRAILGSVERMIAIL 499

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDV-FWDDMGEQ 387
             ++ GK   WP  ++P ++ ++ + + +D+      E +  R+ + G  V    D G  
Sbjct: 500 TENYGGK---WPLWLSPRQVMILAVSSKYDEY----AESVRLRMHEAGIQVDLEKDPGLT 552

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +  +   A L  +   ++VG K  ++  V I+ R   +  +++++ VI+   H
Sbjct: 553 LNKKIRTAQLEQYNFILVVGEKEETNGTVNIRTRDNKVHGELTVQAVIDRLLH 605


>gi|156978155|ref|YP_001449061.1| threonyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|156529749|gb|ABU74834.1| hypothetical protein VIBHAR_06960 [Vibrio harveyi ATCC BAA-1116]
          Length = 394

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +  +++ + +R   +R+G  E++ P     +LW +SG  D + + M    
Sbjct: 22  GMIFWHPNGWRLFESIKSHMRSVYHRSGFQEVNTPVFMKQELWQKSGHIDMFSENMFFGG 81

Query: 98  DRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           ++  ++  +  P        +++  + S+++LP   ++  L  R+E      G +R+R+F
Sbjct: 82  NQEQQSGYVLKPMSCPAHILLYKRGVHSHKDLPIKLFEFGLVHRNESSGSLNGCLRARQF 141

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
              DA+ F    E ++    +      +++   G + I ++  + P
Sbjct: 142 TQDDAHVF-CQWEQAEDEVRQFLQRARKVYAAYGYEHIEVKVSTKP 186


>gi|291533300|emb|CBL06413.1| threonyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 423

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 163/414 (39%), Gaps = 53/414 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    + +    RE   + G  E+  P + +  LW  SG +D Y +
Sbjct: 43  LHEEGPGFPFFHPNGMVIRNELINYWREVHRQFGYQEIKTPMIMNRKLWETSGHWDHYKE 102

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      ++ +   SYR+LP    ++ L  R EL     G+
Sbjct: 103 NMYFTKIDGEDYAI--KPMNCPGGMLVYLTQQHSYRDLPLRLGELGLVHRHELSGALHGL 160

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           MR R F   DA+ F + P   +    ++   + +++   GL     +  R E   +G D 
Sbjct: 161 MRVRNFTQDDAHIF-MLPNQIEDEIQRVIDLFDKVYSTFGLTYHAELSTRPEDS-MGSD- 217

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   +  ET     ++ +      E+     +I+     E   A Y    D H   
Sbjct: 218 --------EVWETATNALRNAL------EHRGLKYVIN-----EGDGAFYGPKIDFH--- 255

Query: 267 LFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM 322
           L DS+        R  + G I        K+ L    T+ G DG+ H  V +     G++
Sbjct: 256 LTDSI-------GRTWQCGTIQLDMLMPEKFDL----TYIGEDGQKHRPVMIHRVVYGSI 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  ++ G    +P  +AP ++ ++ I   D+   D   +I  ++  +G  V  D
Sbjct: 305 ERFIGILIENYAGA---FPAWLAPVQVKILPIS--DKYV-DYAYEIKRKMFDLGIRVEVD 358

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D  E+IG +   A +   P  +IVG   + +  + ++ R       M  +  IN
Sbjct: 359 DRNEKIGYKIREAQVKKVPYSIIVGESELENKNISVRKRREKDTVTMDTDTFIN 412


>gi|270158051|ref|ZP_06186708.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|269990076|gb|EEZ96330.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
          Length = 639

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 48/393 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 259 APGMVFWHPKGWTIYQELERYMRHRLADFGYQEIRTPQLVDRVLWEKSGHWANFRDEMF- 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +  ++     P +      +F   +KSYR+LP  F +     R E      G+MR R 
Sbjct: 318 VTETENRHYAVKPMNCPCHVQVFNQGLKSYRDLPLRFSEFGNCHRCEPSGSLHGLMRVRN 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +  DA+ F  T +  +     M      ++   G   I  R    P     S E    A
Sbjct: 378 MVQDDAHIF-CTEDQIQSEVAMMLELVQSVYTDFGFNEIKYRLALRPEKRVGSDEVWDKA 436

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    Q    ++      P E   +   I  +                    L D L   
Sbjct: 437 EAALKQAMKERNIEWVDAPGEGAFYGPKIECS--------------------LSDCL--- 473

Query: 275 KRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
                     G I+  GT    +S+P  + A +   DG K   V +    +G+      +
Sbjct: 474 ----------GRIWQCGTIQVDFSMPGRLDAIYIAEDGSKQTPVMLHRAILGSFERFMGI 523

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + GK  +W   ++P +  ++ I        +  EK+   L K G    +D   E+I
Sbjct: 524 LIEHYAGKLPLW---LSPVQAIIMTISEKQS---EYAEKVTQILQKNGIRANFDLRNEKI 577

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G +     L   P  +++G K V   +V ++ R
Sbjct: 578 GFKIREHTLQKIPYLLVIGDKEVESGQVAVRTR 610


>gi|251795037|ref|YP_003009768.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247542663|gb|ACS99681.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 637

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 152/421 (36%), Gaps = 45/421 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G      +    RE  NR    E+  P + +  +W +SG ++ Y 
Sbjct: 257 MFSEEAPGMPFYLPKGMAIRTALENFSRELLNRNDYEEVRTPFMMNKRMWEQSGHWEHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           K+ +     ++      P +      IF++ ++SYR LP    +     R EL     G+
Sbjct: 316 KDNMYFTKVDESEFALKPMNCPGHMLIFKNSLRSYRELPVRLAEFGQVHRHELSGALGGM 375

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F + P+  +    K+      ++   G                    
Sbjct: 376 MRVRTFCQDDAHLF-VRPDQIEEEIGKVMSLIGEVYKVFGFA------------------ 416

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           + V   T       S +  D    S     D       I E   A Y    D H   + D
Sbjct: 417 YTVELSTRPADYMGSDELWDEAEQSLKNVLDAQGVNYRINEGDGAFYGPKIDFH---IVD 473

Query: 270 SLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVV 325
           +L        R  + G I   F    K+ L    ++ G D K     +    I G++   
Sbjct: 474 AL-------KRSWQCGTIQLDFQMPEKFDL----SYIGEDNKKQRPVVIHRAIYGSLDRF 522

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   IW   +AP +  +I +  H+    D   ++ ++L + G  V  D   
Sbjct: 523 LGILIEHYSGAFPIW---LAPVQAKVIPVSEHEL---DYALQVKSQLIQAGIRVEVDARS 576

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E++G++   + L   P  ++VG        V ++ R         LEE+       F   
Sbjct: 577 EKLGNKIRKSQLEKVPYMLVVGKNERLSGSVSVRKRGEAEGSVQQLEEIAGAIVEEFRKR 636

Query: 446 R 446
           R
Sbjct: 637 R 637


>gi|224531616|ref|ZP_03672248.1| threonyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511081|gb|EEF81487.1| threonyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 581

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/414 (18%), Positives = 158/414 (38%), Gaps = 47/414 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRSLIEDFWREEHSKNGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T         ++    + ++++ G  S+     + P   +G D        
Sbjct: 325 QDDAHII-CTHSQVVDEIKEVLRFAIYMWNKFGFNSLKAYLSTKPDKSVGND-------- 375

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD   +     +   DF +P E            I +   A Y    D+   K+ DSL  
Sbjct: 376 ADWEMSLKVLEETLSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSLER 420

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
             ++S    +          ++LP   + T+   DGK+    M     +G++     ++ 
Sbjct: 421 EWQMSTIQFD----------FNLPERFNMTYTADDGKEKRPFMIHRALLGSIERFFGILV 470

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   +W   ++P +  +I +   +    D   K+  +    G  +  D+   ++ +
Sbjct: 471 EHYGGAFPLW---LSPVQAVIIPV---NNTVEDYAIKVLNKFKNEGIRIKLDNSSSRMNA 524

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +         P   I+G + V++ ++ I+ R       + L E + +   +  N
Sbjct: 525 KIREYQAKKIPYMFIIGEREVAEERISIRTRTNEQINGIELNEALKFILLKIRN 578


>gi|124027657|ref|YP_001012977.1| bifunctional aminoacyl-tRNA synthetase [Hyperthermus butylicus DSM
           5456]
 gi|123978351|gb|ABM80632.1| Bifunctional aminoacyl-tRNA synthetase [Hyperthermus butylicus DSM
           5456]
          Length = 380

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G + + G  +++P     +  D    Y    SYGI   R+VA VI    D +G 
Sbjct: 223 GKTLQIGTVHHLGQNFTVPFDVKIQLRDESIDYAWQTSYGISD-RIVATVIAIHGDDRGA 281

Query: 339 IWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           + P +VAP ++ +I I A D     ++  +  EK+   L K G     DD  + + G +F
Sbjct: 282 VLPPNVAPIQVVVIPIPAGDDEEKKRLVAEHLEKVKEVLKKAGIRFRVDDREDVRPGRKF 341

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +  G P+++ VG +      V +  R T
Sbjct: 342 YEWEAKGVPVRIEVGLREAETGTVLVARRDT 372



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 28/177 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL----------------W 80
           KG+  WLP G +    +  ++RE  + TG  E+ +P L    L                W
Sbjct: 35  KGMGIWLPYGFQLRRRIIELVREVLDSTGHEEILMPLLIPEHLLRKESEHIRGFEGEVYW 94

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V  G     G E L      D  +   PT E  +T +    IKSYR LP  +YQI   FR
Sbjct: 95  VTHG-----GHEPL------DVKLALRPTSETSITYMESFWIKSYRQLPKKYYQIVSIFR 143

Query: 141 DELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            E +    ++R RE    K+A++   +   +     +    Y +IF  LG+  +  R
Sbjct: 144 YETKATRPMIRLREVTTFKEAHTVHDSFADADRQVAEAIELYKKIFDELGIPYVISR 200


>gi|150018038|ref|YP_001310292.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149904503|gb|ABR35336.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 635

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 174/454 (38%), Gaps = 58/454 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L +   N  +A+   H+ +   L+     +   G    LP G    + +    R+ 
Sbjct: 224 SKKELEVHLHNLEEAKKRDHRKLGKELKLFTFAEEGPGFPFMLPKGVILKNTLIDFWRKL 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +E+  P + +  LW  SG +  Y +E +  +  +++     P +      +++S
Sbjct: 284 HYEDGYVEIETPIMLNKKLWETSGHWYHY-RENMYTSSIDEEEFALKPMNCPGGMLVYKS 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+ P    ++    R EL     G+MR R F   DA+ F + P+  K     +  
Sbjct: 343 ESHSYRDFPMRVGELGRVHRHELSGALHGLMRVRAFTQDDAHIF-MLPDQIKSEIKGVIN 401

Query: 180 SYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +++ + G K    +  R E   +G D   E        E+ +  + D ++       
Sbjct: 402 LIDKVYSKFGFKYNLELSTRPEDS-MGSDEEWEL------AESSLKGALDELNLEYKINE 454

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---K 293
            D               A Y    D H   L DS             +G  +  GT    
Sbjct: 455 GD--------------GAFYGPKIDFH---LEDS-------------IGRTWQCGTIQLD 484

Query: 294 YSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           + LP      + G+DG+ H  + +     G++     ++     GK   +P  ++P ++ 
Sbjct: 485 FQLPQRFELEYVGSDGEKHRPIVIHRVVFGSIERFIGILIEHFAGK---FPTWLSPVQVK 541

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ I           EKI  +LS  G  V  D   E+IG +   A     P  +IVG K 
Sbjct: 542 ILPI---SNKFNSYSEKIKDKLSSEGIRVEIDQKDEKIGYKIREARNERVPYIIIVGEKE 598

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +++ + ++ R  G    ++LE++I   ++   N
Sbjct: 599 AAENNISLRSRSNGDEGTLNLEDLIERINNEVKN 632


>gi|296536619|ref|ZP_06898695.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263053|gb|EFH09602.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 660

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 70/179 (39%), Gaps = 10/179 (5%)

Query: 17  DAEIASH-KLMLRTGMIHQHSKGIYS--WLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+    G+ H   + + S  W P G +    +   +R  Q   G  E+  P 
Sbjct: 238 EAERRDHRKIGKEMGLFHLQEEAVGSIFWHPKGWRLYTTLQDYMRRRQEAGGYQEVRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           L    LW  SG +D Y + M           D+ +   P +      IF   ++SYR LP
Sbjct: 298 LVDRKLWEASGHWDKYRENMFIATVDDESEKDRVLALKPMNCPCHVQIFNHGLRSYRELP 357

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
               +     R E      G+MR R F+  DA+ F    E    +    FV+ L   +R
Sbjct: 358 LRMAEFGACHRYEPSGALHGIMRVRSFVQDDAHIF--CAEDQIAAETVEFVALLSAVYR 414


>gi|146169598|ref|XP_001017218.2| threonyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|146145134|gb|EAR96973.2| threonyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 882

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            HQ S G   + P G    + +  ++R++    G  E+  P L  A LW  SG +D Y +
Sbjct: 353 FHQFSPGCAFFYPNGAHIYNKLMEVLRKQYKIRGYSEVITPNLFDAQLWKISGHWDKYKE 412

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  L + N++   + P +      +F S  +SYR+LP  +    +  R+E+     G+ 
Sbjct: 413 NMFLLKNDNEEHG-FKPMNCPAHCLMFDSIQRSYRDLPLRYADFGVLHRNEVHGALSGLT 471

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 472 RVRRFQQDDAHIF 484


>gi|237740439|ref|ZP_04570920.1| threonyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229422456|gb|EEO37503.1| threonyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 637

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/433 (20%), Positives = 177/433 (40%), Gaps = 52/433 (12%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    I ++  G   +LP G    + +  + R+E  + G +++  P 
Sbjct: 236 EAEKRDHRKLGKDLELFFISEYGPGFPFFLPKGMVFRNVLIDLWRKEHEKAGYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y +E +  ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNY-RENMYTSEIDELEFAIKPMNCPGGVLSFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TP+  +                +G+ +
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEI-------------IGVVN 400

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           +  R  S   G     E+ +   T   +   S++  D    +     D +     I    
Sbjct: 401 LIDRFYSKLFG----FEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGD 456

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG 307
            A Y    D    K+ D+             +G ++  GT    ++LP     T+ G DG
Sbjct: 457 GAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFNLPERFDVTYIGEDG 500

Query: 308 KDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++   + G   +W   +AP ++ ++ +   +  C    +
Sbjct: 501 EKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTL---NDECIPYAK 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I+   +  
Sbjct: 555 EIMDKLQELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEVENKEVNIRRFGSKD 614

Query: 426 REDMSLEEVINYA 438
           +   SL++  +Y 
Sbjct: 615 QFSKSLDDFYDYV 627


>gi|221633051|ref|YP_002522276.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221156502|gb|ACM05629.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 596

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 163/419 (38%), Gaps = 68/419 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  WLP G K L+ +    R+E  + G  E++ P +    LW  SG +D Y + M  
Sbjct: 211 APGMPYWLPKGLKILNLLLDFWRQEHEKRGYQEIAAPLINDKSLWEVSGHWDHYRENMFL 270

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           +  + D+ + YG  P +      ++    +SYR+LP       +  R E      G++R 
Sbjct: 271 I--QLDEHLTYGVKPMNCPNAMIVYNLKKRSYRDLPLRLSDCDILHRYERSGTLHGLLRV 328

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F   DA+ F +T +  +  + ++       +   GL+   +R  + P           
Sbjct: 329 RKFQQDDAHIF-VTEDQIEEEFARILEIAQLFYGIFGLRYT-LRLGTRP----------- 375

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP------------YAATS 260
                        DFM  P   +  +     +L  I+++   P            Y    
Sbjct: 376 ------------ADFMGDPETWDKAE----AALQRILDRHAGPGNYLIGEGEGAFYGPKI 419

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSY 317
           D+  E   D+L        R  + G I      + LP     T+   DG +   V +   
Sbjct: 420 DILME---DAL-------GRQWQTGTI---QLDFQLPRRFGCTYTDRDGTEKTPVVIHRV 466

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G++     ++     G   +W   +AP + ++I I   D+    A  ++  RL   G 
Sbjct: 467 IYGSLERFIGILIEHFAGAFPVW---LAPVQATIIPIA--DRHLPYAY-RVRDRLRDAGL 520

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            V  DD  E++ ++   A L   P  ++VG + V++  + ++ R       MS+E  I 
Sbjct: 521 RVEVDDGDERMQAKIRSAQLQKIPYMLVVGDREVNEESLAVRLRTNENIGSMSIERFIT 579


>gi|255654137|ref|ZP_05399546.1| prolyl-tRNA synthetase [Clostridium difficile QCD-23m63]
          Length = 481

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 226 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 285 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFNEWEM 344

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            G P+++ +G K + +++  +  R T  ++ M LE + +     F
Sbjct: 345 KGVPVRIEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAVCDLF 389


>gi|254973701|ref|ZP_05270173.1| prolyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091091|ref|ZP_05320569.1| prolyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255312746|ref|ZP_05354329.1| prolyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515507|ref|ZP_05383183.1| prolyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255648599|ref|ZP_05395501.1| prolyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|306518723|ref|ZP_07405070.1| prolyl-tRNA synthetase [Clostridium difficile QCD-32g58]
          Length = 481

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 226 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 285 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKTKGVAVEVDDRDNYTTGWKFNEWEM 344

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G P++V +G K + +++  +  R T  ++ M LE
Sbjct: 345 KGAPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLE 379


>gi|315651290|ref|ZP_07904318.1| threonine--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315486442|gb|EFU76796.1| threonine--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 651

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 152/396 (38%), Gaps = 41/396 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   LP G K +  +   I + E N  G +    P +  +DL+  SG +D Y   M  
Sbjct: 259 QGLPLMLPKGTKMIQKLQRWIEDLEDNEWGYVRTKTPLMAKSDLYKISGHWDHYQDGMFI 318

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      I    P        ++++  KSYR+LP+   +    FR+E      G+ R 
Sbjct: 319 LGDPQHDGEILALRPMTCPFQYYVYKNTQKSYRDLPYRMGETSTLFRNEDSGEMHGLTRV 378

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFI 211
           R+F + + ++  + P+ ++          + +   LGL+  +  R        D +++  
Sbjct: 379 RQFTISEGHNV-IRPDQAEEELQNCLNLAIYVLETLGLRDDVTFRLSK----WDKNNKEK 433

Query: 212 VLADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            L D      TQ       ++  +P    D +       I  Q    Y     +   +L 
Sbjct: 434 YLGDEAYWEGTQAALRNILVEKGLPFTEADGEAAFYGPKIDIQAKNVYGKEDTMITIQLD 493

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            ++ EN        ++ +I   G K    +           H   +G Y     R +A +
Sbjct: 494 AAIAEN-------FDLYYIDQNGAKVRPYIV----------HRTSLGCY----ERTLAWL 532

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE  + GK   W   + P ++ ++ I   D+   D    +   L K G D   D   E+I
Sbjct: 533 IE-KYAGKFPTW---LCPEQVRILPI--SDKYA-DYANSVLKELKKNGVDATVDTRTEKI 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G +   A L   P  ++VG K  ++  V ++ R  G
Sbjct: 586 GFKIRDARLSRLPYMLVVGEKEEAEGSVSVRSRFAG 621


>gi|269986191|gb|EEZ92503.1| prolyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 477

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 3/148 (2%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y G  ++ P    F     +  Y    S+GI +MR +  ++    D KG++    VAP++
Sbjct: 231 YLGQNFAKPFDIKFLDEKNELQYPFQTSWGI-SMRSIGIMLLVHGDDKGLVLSPHVAPYQ 289

Query: 349 ISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
             +I  IK       + C +I +RL ++G  V  D   +   G +    DL G PL++ +
Sbjct: 290 CVIIPIIKEEKDKVLEYCGQIESRLKEIGIRVLLDSREDYSPGWKLNEYDLKGVPLKIQI 349

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G + +    + +K R+  ++  +S  E+
Sbjct: 350 GKRELESRNISLKTRINNVQSIVSFNEI 377



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E +M D +   IKSYR+LP    Q     R E +     +R RE L ++ 
Sbjct: 102 DERLAIRPTSETIMYDSYSKWIKSYRDLPLLINQWNTMVRWETKETRLFLRGREVLWQEG 161

Query: 161 YS-FDLTPEGSKHS 173
           +  F    E  K++
Sbjct: 162 HCVFKTEEEADKNA 175


>gi|170726837|ref|YP_001760863.1| threonyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|238688661|sp|B1KG61|SYT_SHEWM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169812184|gb|ACA86768.1| threonyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 642

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 143/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++  +    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTNSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G K I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHVF-CTEDQVQQEVSACIKMVYDTYETFGFKDIVVKLSTRPEKRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   + D     +P E   +   I                       L
Sbjct: 432 -DMWDRAEEALKQALTANDIAYEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPGRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   W   +AP +  ++NI        D  +++   L + G     D  
Sbjct: 521 FLGILIEEYAGKFPTW---LAPMQAVVMNITDKQS---DYVDEVVNILKENGIRASKDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|54295556|ref|YP_127971.1| threonyl tRNA synthetase [Legionella pneumophila str. Lens]
 gi|73919803|sp|Q5WT82|SYT_LEGPL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53755388|emb|CAH16884.1| Threonyl tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 637

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 147/396 (37%), Gaps = 54/396 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 259 APGMVFWHPKGWTIYQELEHYMRNRLVDFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF- 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +  ++     P        I+   +KSYR+LP    +     R E      G+MR R 
Sbjct: 318 VTETENRHYAVKPMSCPCHVQIYNHGLKSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRN 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
            +  DA+ F  T +  +     M      ++   G   I  R    P   +G D      
Sbjct: 378 MVQDDAHIF-CTEDQIQSEVAMMLELVQSVYKDFGFTEIKYRLALRPEKRVGSD------ 430

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D  ET        +   +   N ++ D            AP       +  K+  SL
Sbjct: 431 DVWDKAETA-------LKLAMQGRNIEWVD------------AP--GEGAFYGPKIECSL 469

Query: 272 PENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVV 325
            +          +G I+  GT    +S+P  + A++   DG K   V +    +G+    
Sbjct: 470 SDC---------LGRIWQCGTIQVDFSMPARLEASYVAEDGSKQTPVMLHRAILGSFERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P +  ++ I        +  EK+   L K G    +D   
Sbjct: 521 MGILIEHYAGKLPLW---LSPVQAVVLTISEKQN---EYAEKVRKTLQKRGVRANFDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  ++VG K V + +V ++ R
Sbjct: 575 EKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTR 610


>gi|118566325|gb|ABL01534.1| tRNA synthetase [Mycosphaerella fijiensis]
          Length = 182

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 3/161 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            HQ S G   +LP G    +++ A ++EE  R G  E++ P + ++ LW +SG +  Y +
Sbjct: 15  FHQMSPGSAFFLPHGMIIYNSLMAYLKEEYWRRGYQEVASPNMYNSALWKQSGHWQHYHE 74

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M       DK  +  P +      +F    +SYR LP       +  R+E      G+ 
Sbjct: 75  DMFTFDVEKDKWAL-KPMNCPGHCLLFAHRERSYRELPMRIADFGILHRNEASGALTGLT 133

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           R R F   D + F  T    +   N +F   + ++ R G K
Sbjct: 134 RVRRFQQDDTHIF-CTEAQIEQEINGLFDFMMAVYGRFGFK 173


>gi|296163127|ref|ZP_06845898.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295886629|gb|EFG66476.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 635

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/424 (20%), Positives = 162/424 (38%), Gaps = 53/424 (12%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H      +F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGH----VQVFNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS--YNKM 177
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S  +N +
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNTL 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +S   ++   G  ++ ++    P     + E    A+ G  +   +       +P E  
Sbjct: 403 AMS---VYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEG- 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                           A Y    + H   + D+L  + +     +++      G +Y   
Sbjct: 459 ----------------AFYGPKVEYH---IRDALGRSWQCGTLQLDMVLPERLGAEY--- 496

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   + +   + +    +G+M     ++   H G    W   +AP ++ ++NI A 
Sbjct: 497 ----VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNI-AE 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q   +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V 
Sbjct: 549 SQT--EYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVA 606

Query: 418 IKHR 421
           ++ R
Sbjct: 607 VRAR 610


>gi|238783384|ref|ZP_04627407.1| Threonyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238715629|gb|EEQ07618.1| Threonyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 642

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 145/408 (35%), Gaps = 70/408 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRLAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA--ATSDVHNE 265
                                                     EQWT   +  A +   N 
Sbjct: 432 ------------------------------------------EQWTRAESDLAAALTENG 449

Query: 266 KLFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQM 314
             FD  P         IE      +   +  GT    +SLP  +SA++ G +       M
Sbjct: 450 IPFDYQPGEGAFYGPKIEFTLHDCLDRAWQCGTVQLDFSLPGRLSASYIGENNDRQVPVM 509

Query: 315 GSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               I G++     ++   + G    +P  +AP ++ ++NI        D  +++  +L 
Sbjct: 510 IHRAILGSIERFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQ 563

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 564 DAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|307611592|emb|CBX01274.1| threonyl tRNA synthetase [Legionella pneumophila 130b]
          Length = 637

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 147/396 (37%), Gaps = 54/396 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 259 APGMVFWHPKGWTIYQELEHYMRNRLVDFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF- 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +  ++     P        I+   +KSYR+LP    +     R E      G+MR R 
Sbjct: 318 VTETENRHYAVKPMSCPCHVQIYNHGLKSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRN 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
            +  DA+ F  T +  +     M      ++   G   I  R    P   +G D      
Sbjct: 378 MVQDDAHIF-CTEDQIQSEVAMMLELVQSVYKDFGFTEIKYRLALRPEKRVGSD------ 430

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D  ET        +   +   N ++ D            AP       +  K+  SL
Sbjct: 431 DVWDKAETA-------LKLAMQGRNIEWVD------------AP--GEGAFYGPKIECSL 469

Query: 272 PENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVV 325
            +          +G I+  GT    +S+P  + A++   DG K   V +    +G+    
Sbjct: 470 SDC---------LGRIWQCGTIQVDFSMPARLEASYVAEDGSKQTPVMLHRAILGSFERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P +  ++ I        +  EK+   L K G    +D   
Sbjct: 521 MGILIEHYAGKLPLW---LSPVQAVVLTISEKQN---EYAEKVRKTLQKRGVRANFDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  ++VG K V + +V ++ R
Sbjct: 575 EKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTR 610


>gi|167752565|ref|ZP_02424692.1| hypothetical protein ALIPUT_00818 [Alistipes putredinis DSM 17216]
 gi|167659634|gb|EDS03764.1| hypothetical protein ALIPUT_00818 [Alistipes putredinis DSM 17216]
          Length = 494

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 249 VEQWTA-PYAATSDVHNEKL---FDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           VE+W   P        NE+     D+L  E      + ++ G   + G  ++      + 
Sbjct: 201 VEEWMGVPVIVGHKSPNERFAGAVDTLTIEALMQDGKALQSGTSHFLGQNFAKAFDVQYI 260

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ LI I   ++  R 
Sbjct: 261 NKEGKLEYVWATSWGV-STRLMGALIMAHSDNNGLVLPPKLAPIQVVLIPIYKGEEQMRQ 319

Query: 364 ACEK---IYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             E+   I   L   G  V  DD    + G +FA  +L G P+++ +G + + +  +E+ 
Sbjct: 320 IVERLRTIAEELKSKGLSVKIDDRDNVRSGFKFAEYELKGVPVRLALGPRDLENGTIELV 379

Query: 420 HRLTGIREDMSLE 432
            R T  +E +  E
Sbjct: 380 RRDTLEKETVPQE 392



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEELIVRPTSETIIWNTYKGWIQSYRDLPILCNQWANVVRWEMRTRL-FLRTAEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLR 183
           ++   T E +     +M   Y +
Sbjct: 177 HTAHATKEEAIEEATRMIHVYQK 199


>gi|296327515|ref|ZP_06870061.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155341|gb|EFG96112.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 637

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 90/447 (20%), Positives = 181/447 (40%), Gaps = 56/447 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R K+ L +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R 
Sbjct: 226 RLKHHLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLIDLWRR 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  ++  P + + +LW  SG + +Y +E +  ++ ++      P +       F+
Sbjct: 282 EHEKAGYQQLETPIMLNKELWEISGHWFNY-RENMYTSEIDELEFAIKPMNCPGGVLAFK 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +       
Sbjct: 341 HQLHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEI---- 395

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    +G+ ++  +  S   G     E+ +   T   +   S++  D    +    
Sbjct: 396 ---------IGVVNLIDKFYSKLFG----FEYEIELSTKPEKAIGSQEIWDMAEAALAGA 442

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
            D +     I     A Y    D    K+ D+             +G ++  GT    ++
Sbjct: 443 LDKLGRKYKINPGDGAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFN 486

Query: 296 LP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP     T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++
Sbjct: 487 LPERFDVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVL 543

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFV 411
            +   +  C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V
Sbjct: 544 TL---NDECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEV 600

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYA 438
            + +V I+   +  +   SL+E   Y 
Sbjct: 601 ENKEVNIRRFGSKDQFSKSLDEFYTYV 627


>gi|17227831|ref|NP_484379.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17129680|dbj|BAB72293.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 615

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 8/171 (4%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            Q   G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++
Sbjct: 224 EQVGPGLPLWTPKGTLLRSTLEQFLQQEQLKRGYLPVVTPHIARVDLFKTSGHWQKYKED 283

Query: 93  MLRL------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           M  L      A   ++  +  P +      I++S ++SYR LP    +    +R E    
Sbjct: 284 MFPLMAEDEAAAAIEQGFVLKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGE 343

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             G+ R R F + D++ F +TPE   + +  +    L +F  L LK+   R
Sbjct: 344 LGGLTRVRGFTVDDSHLF-VTPEQLDNEFLNVVDLILSVFKSLQLKNFKAR 393


>gi|260901781|ref|ZP_05910176.1| threonine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|308108104|gb|EFO45644.1| threonine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
          Length = 386

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 159/422 (37%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +R++ N     E+  P +    LW  SG +D Y  
Sbjct: 1   MQQEAPGMVFWHHNGWSIFRDLEVFVRDKLNEYDYQEVKGPLMMDRVLWERSGHWDKYAD 60

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 61  AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  +   + + + Y   +   G  +I ++  + P   +G D  
Sbjct: 120 RVRGFTQDDAHIFCTESQIQEEVTSCIKMVY-DTYQTFGFDNIVVKLSTRPEKRVGSD-- 176

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + M+ P                I E   A Y    +     L
Sbjct: 177 ----EIWDQSEEALKQSLESMEIPY--------------EIQEGEGAFYGPKIEF---TL 215

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 216 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 265

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  L+NI           ++I  +L K G     D  
Sbjct: 266 FIGILIEEYAG---FFPTWLAPEQAVLMNITDKQS---GYVQEIVQKLQKSGIRAKADLR 319

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+
Sbjct: 320 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISS 379

Query: 445 NR 446
            +
Sbjct: 380 RK 381


>gi|21243325|ref|NP_642907.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|25453288|sp|Q8PJE1|SYT_XANAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21108867|gb|AAM37443.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 634

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 142/394 (36%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L P+  +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVFCLEPQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        D+  K    L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVANITDAQAEYVDSVRKT---LANQGFRVSADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 611


>gi|302380527|ref|ZP_07268992.1| threonine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|303234012|ref|ZP_07320661.1| threonine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302311470|gb|EFK93486.1| threonine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302494937|gb|EFL54694.1| threonine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 634

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 158/425 (37%), Gaps = 55/425 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   + P G   L+ +   ++E+    G  ++  P + +  LW +SG +D Y +
Sbjct: 255 IQEEGPGFPFFHPNGMVVLNELEKFLKEQLLERGYGQIKTPLILNEHLWHQSGHWDHYKE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      +++  + SYR LP    ++    R EL     G+
Sbjct: 315 NMYFTKIDGEDYAI--KPMNCPGSILVYKDELHSYRELPIKVAELGQVHRHELSGALHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            R R F+  DA+ F L PE  +   +K+  F  Y  I+ + G K                
Sbjct: 373 FRVRTFVQDDAHVFCL-PEQIEDEVSKIIDFCDY--IYSKFGFK---------------- 413

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             + V   T       S +  D  I S     +       I E   A Y    D H E  
Sbjct: 414 --YEVELSTRPEDSMGSDEDWDLAISSLKNALEHKGLPYKINEGDGAFYGPKIDFHLEDA 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
                           +G  +  GT    + +P     T+  +DG      M    I G+
Sbjct: 472 ----------------IGRTWQCGTIQLDFQMPERFDMTYIASDGSKKRPAMIHRAILGS 515

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + GK  +W   ++P ++ ++ I        D   ++  ++   G  V  
Sbjct: 516 EERFMGILIEHYAGKFPLW---LSPVQVEILPISDK---FNDYAYELQQKMKARGLRVKV 569

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+IG +   + L      +I+G   + +++V ++ R  G     + +E IN     
Sbjct: 570 DDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRKRDIGDVGSKNTDEFINELVDE 629

Query: 442 FSNNR 446
           + N +
Sbjct: 630 YQNRK 634


>gi|225551832|ref|ZP_03772775.1| threonyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371627|gb|EEH01054.1| threonyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 581

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/411 (19%), Positives = 163/411 (39%), Gaps = 55/411 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHVGKSWLWQTSGHLDFYKDSMFAKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE--FI 211
             DA+    T         ++    + ++ + G  ++     + P   +G D   E    
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFSNLKAYLSTKPDKSVGNDSDWEMSLK 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL +T            DF +P E            I +   A Y    D+   K+ DSL
Sbjct: 384 VLEET----------LSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSL 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAV 328
               ++S    +          ++LP   + T+   DGK+    M     +G++     +
Sbjct: 419 EREWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P ++ +I +   + +  D   K++ +    G  +  D+   ++
Sbjct: 469 LVEHYGGAFPLW---LSPVQVVIIPV---NNIVEDYAIKVFNKFKNEGIRIKLDNSSSRM 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVI 435
            ++         P   I+G +  ++ ++ I+ R    + GI+ D +L+ ++
Sbjct: 523 NAKIREYQAKKIPYMFIIGEREATEERISIRTRTNEQINGIKLDEALKFIL 573


>gi|93353957|gb|ABF08046.1| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 663

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 14/201 (6%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +T  + H  + + G+  W P G +    V   +R    +
Sbjct: 259 YLHMLEE----AEKRDHRRLGKTLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLGQ 314

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D+Y KE + + +   +     P +      IF   ++
Sbjct: 315 AGYEEVRTPQVMDRSLWERSGHWDNY-KENMFVTESEKRDYAIKPMNCPGHVQIFNHGLR 373

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVS 180
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +      ++N++  S
Sbjct: 374 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFCTEEQIVEEAKAFNELAFS 433

Query: 181 YLRIFHRLGLKSIPMRAESGP 201
              I+   G K + ++    P
Sbjct: 434 ---IYDDFGFKDVAVKLSLRP 451


>gi|332295956|ref|YP_004437879.1| threonyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332179059|gb|AEE14748.1| threonyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 606

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 172/417 (41%), Gaps = 49/417 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  +   G+  W P G      +   +R+E  + G   +  P + +  +W  SG +D Y 
Sbjct: 222 MADEVGAGLILWHPNGGVIRTIIEDYLRKEHVKRGYEIVYTPHMMNLKIWKISGHFDFY- 280

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE + + + + +     P +      I+ S  +SYR+LP  F+++   +R E      G+
Sbjct: 281 KENMYIFENDGQEYAVKPMNCPGHMMIYNSKTRSYRDLPIRFFELGTVYRFERSGALHGL 340

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           +R R F   DA+ F  T E  +     +      +    G K   S+  R + G IG D 
Sbjct: 341 LRVRGFTQDDAHIF-CTNEQLQDEIIGVLNFAKDMMELFGFKYVVSVGTRPD-GSIGTD- 397

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                        Q   + + +   +  +N +F+       I++   A Y     V   +
Sbjct: 398 ------------EQWNLATNSLISALKQKNIEFE-------IIDGDGAFYGPKIQV---E 435

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAM- 322
           L D+L   ++ +   I+V         ++LP     + AD    K   V +    +G+M 
Sbjct: 436 LIDAL--GRKWTGPTIQV--------DFALPERFNLEYADKDGTKKRPVMIHRTVVGSME 485

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R + A+IE+       ++P  ++P +I +I +K   ++   + E +  +LSK    V  D
Sbjct: 486 RFLGALIENYAG----VFPAWLSPIQIIIIPVKEDSELLEYSSE-VEKKLSKEDYRVKVD 540

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              E +  +   A+L   P  +++G K + +  + ++ R       MS+EE +   S
Sbjct: 541 KRNETLKYRIRDAELNRIPYILVIGKKELDEKLISLRTRGMKDEGQMSIEEFLKRLS 597


>gi|224134713|ref|XP_002327471.1| predicted protein [Populus trichocarpa]
 gi|222836025|gb|EEE74446.1| predicted protein [Populus trichocarpa]
          Length = 448

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 131/327 (40%), Gaps = 69/327 (21%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 67  EEKLVVRPTSETIVNHMFTQWIHSYRDLPLMVNQWANVTRWEMRTK-PFVRTLEFLWQEG 125

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++    PE +++   +M   Y +  +     +IP                ++     + +
Sbjct: 126 HTAHANPEEAENEALQMIDVYTKFAYEQA--AIP----------------VIAGRKSKAE 167

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F                 D   ++ +++    A  A TS  HN                
Sbjct: 168 TFAGA--------------DRTYTIEAMMGDRKALQAGTS--HN---------------- 195

Query: 281 GIEVGHIF--YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              +G  F   FGT+        F   +G+  +V   S+ + + R +  +I +  D  G+
Sbjct: 196 ---LGQNFSRAFGTQ--------FMDENGERQHVWQTSWAV-STRFIGGIIMTHGDDSGL 243

Query: 339 IWPDSVAPFKISLINI-KAHDQVC--RDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  +AP ++ ++ I K  D+     +A   +   L   G  V  DD  ++  G +F  
Sbjct: 244 MLPPKIAPIQVVIVPIWKKEDEKTGVLNAASSVKKVLQSAGIKVKLDDTDQRTPGWKFNF 303

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            ++ G PL++ +G + VS + V I  R
Sbjct: 304 WEMKGVPLRIEIGPRDVSSASVVISRR 330


>gi|187924732|ref|YP_001896374.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|238689588|sp|B2SZG2|SYT_BURPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187715926|gb|ACD17150.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 635

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 163/424 (38%), Gaps = 53/424 (12%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H +V    F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGHVQV----FNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS--YNKM 177
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S  +N +
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNTL 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +S   ++   G  ++ ++    P     + E    A+ G  +   +       +P E  
Sbjct: 403 AMS---VYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEG- 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                           A Y    + H   + D+L  + +     +++      G +Y   
Sbjct: 459 ----------------AFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLGAEY--- 496

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   + +   + +    +G+M     ++   H G    W   +AP ++ ++NI A 
Sbjct: 497 ----VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNI-AE 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q   +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V 
Sbjct: 549 SQA--EYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVA 606

Query: 418 IKHR 421
           ++ R
Sbjct: 607 VRAR 610


>gi|186476316|ref|YP_001857786.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|238691316|sp|B2JJJ7|SYT_BURP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|184192775|gb|ACC70740.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 635

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 15/164 (9%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y   M    +++ D A+  +  P H +V    F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRDNMFTTESEKRDYAIKPMNCPGHVQV----FNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIF 386


>gi|84501632|ref|ZP_00999804.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
 gi|84390253|gb|EAQ02812.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
          Length = 659

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 92/442 (20%), Positives = 163/442 (36%), Gaps = 73/442 (16%)

Query: 24  KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           KL    G+ H  + + G   W P G      +   +R +Q   G  E++ P +    LW 
Sbjct: 250 KLGREMGLFHMQEEAPGQVFWHPNGWTIYTTLQDYVRRKQRAGGYNEINTPQVVDRKLWE 309

Query: 82  ESGRYDSYGKEML-------RLADRNDKAM---------IYGPTHEEVMTDIFRSHIKSY 125
            SG ++ Y   M        R  + +D A             P +      +F   +KSY
Sbjct: 310 ASGHWEKYQHHMFIVEVDESRDGEHDDAAAKSREHTRINALKPMNCPCHVQVFNQGLKSY 369

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR- 183
           R+LP    +     R E      G+MR R F   DA+ F  T E  +    + F+ +L  
Sbjct: 370 RDLPLRLAEFGSCARFEPSGALHGIMRVRGFTQDDAHIF-CTEEQIQEECAR-FIDFLAD 427

Query: 184 IFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           I+  LG     +R  + P   +G + S +++     G  +        D+ +   +  F 
Sbjct: 428 IYRELGFPEFEIRFATRPEKRVGTEESWDYV----EGALENAIKATGHDYVLEPGDGAF- 482

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP 297
                          Y    D +   L D+             +G ++  GT     +LP
Sbjct: 483 ---------------YGPKLDFY---LTDA-------------IGRVWQCGTFQVDPNLP 511

Query: 298 --MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A +  ADG+ H   M    + G+      ++  +H GK  +W   +AP ++ +  I
Sbjct: 512 ERLDAGYIAADGERHRPFMLHRAVLGSFERFIGILIENHAGKLPLW---LAPRQVVVAAI 568

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D C ++ A+L   G     D   E+I  +     +   P  +  G K V + 
Sbjct: 569 VSD---ADDYCREVVAKLQAAGIRAETDLRNEKINYKVREHSVGKVPYILACGMKEVEER 625

Query: 415 KVEIKHRLTGIREDMSLEEVIN 436
            V ++          +L+E+++
Sbjct: 626 TVSVRKLGEKQTSGATLDEIVD 647


>gi|268678723|ref|YP_003303154.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616754|gb|ACZ11119.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 605

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRL 96
           G+  WLP G K    +  ++     + G   +  P +  +D W  SG Y +YG+ M   +
Sbjct: 231 GLPIWLPQGGKLRAKLEKLLFTAHRKRGYQPVRGPEILKSDAWKISGHYQNYGENMYFTV 290

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D  +    YG  P +      +F+S ++SYR+LP  F++  +  R E      G+ R R
Sbjct: 291 IDEAE----YGIKPMNCLGHIKVFQSEVRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVR 346

Query: 154 EFLMKDAYSFDLTPEGSKHS 173
           EF   DA+ F  TP+  K +
Sbjct: 347 EFTQDDAHIF-CTPDQIKEN 365


>gi|284048337|ref|YP_003398676.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952558|gb|ADB47361.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 636

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 165/426 (38%), Gaps = 55/426 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+  +  G   +LP G    + +    RE   + G  E+  P + +  LW  SG +D Y 
Sbjct: 256 MLSDYGPGFPFFLPNGMIIRNTLIDYWREVHRKYGYQEVMTPMIMNRQLWETSGHWDHYK 315

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M     D +D A+   P +      ++ +   SY+ LP    ++ L  R EL     G
Sbjct: 316 ENMYFTQIDGDDYAI--KPMNCPGGMLVYANEPHSYKELPLRVGELGLVHRHELSGALHG 373

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           + R R F   DA+ F + P   +    +    +  ++   GL     +  R ++  +G D
Sbjct: 374 LFRVRCFTQDDAHIF-MMPNQIEDVIQETIRLFDEVYATFGLTYHAELSTRPDNS-MGDD 431

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + E    A          K   DF +              SI E   A Y    D H  
Sbjct: 432 ATWEMTTNA--------LRKAMDDFGLKY------------SINEGDGAFYGPKIDFH-- 469

Query: 266 KLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGA 321
            L DS+        R  + G I        K++L    T+ G DG+ H  V +     G+
Sbjct: 470 -LKDSI-------GRTWQCGTIQLDMLLPEKFNL----TYTGEDGQKHRPVMIHRVVYGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVF 380
           +     ++  ++ G    W   +AP ++ ++ I   +++  +   +K+ A+  +      
Sbjct: 518 IERFIGILIENYAGAFPAW---LAPEQVRVMPITDKYNEYAKQIVDKLEAQKIRAHL--- 571

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E++G +   A +   P  +IVG K V    V ++ R  G +  M ++E I     
Sbjct: 572 -DDRNEKVGYKIREAQVKKVPYMLIVGEKEVESGTVSVRSRDNGEQGAMPVDEFIAKLQD 630

Query: 441 RFSNNR 446
              N +
Sbjct: 631 EIKNRK 636


>gi|163746007|ref|ZP_02153366.1| threonyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380752|gb|EDQ05162.1| threonyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 648

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 79/399 (19%), Positives = 140/399 (35%), Gaps = 50/399 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q + G +E++ P +    LW  SG ++ Y  
Sbjct: 260 MQEEAPGQIFWHPNGWSIYTQLQDYMRRQQRKGGYVEVNTPQVVDRKLWEASGHWEKYQD 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 HMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   D + F    E    +    F+++L  I+  LG ++  ++    P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CAEDQIEAETAKFIAFLSEIYRDLGFENFKVKFSDRPEKR 437

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAATSD 261
             S E    A+        +        P E   +    + +  ++I   W         
Sbjct: 438 SGSDEVWDKAEAALLSATRAAGIEPELNPGEGAFYGPKLEFVLTDAIGRDWQCGTHQVDF 497

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG 320
           V        LPE                        + AT+ GADG  H  V +    +G
Sbjct: 498 V--------LPER-----------------------LDATYIGADGGKHRPVMLHRATLG 526

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   H GK   W   +AP ++ + +I +      D   ++   L   G    
Sbjct: 527 SFERFIGILIEEHAGKLPFW---LAPRQVVVASITSE---ADDYVAEVVETLKAAGVRAE 580

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D   E+I  +     +   P+ + VG++ V +  V ++
Sbjct: 581 ADMRNEKINYKVREHSVGKVPVILAVGAREVEERTVSVR 619


>gi|153217256|ref|ZP_01951020.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113711|gb|EAY32531.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 410

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR++ N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 376 RVRGFTQDDAHIF 388


>gi|300173545|ref|YP_003772711.1| threonyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887924|emb|CBL91892.1| Threonyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 655

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 154/393 (39%), Gaps = 48/393 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   I +++   G   +  P L + +L+  SG +D Y ++M    
Sbjct: 266 GLPVWLPNGATIRRQVERYITDKELANGYQHVYTPVLSNLNLYKTSGHWDHYREDMFPPM 325

Query: 98  DRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  D   +       P+H  +M  +F+   +SYR LP    ++ +  R E      G+ R
Sbjct: 326 DMGDGEFLELRPMNCPSH--IM--VFKHKPRSYRELPIRIAELGMMHRYEKSGALTGLSR 381

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE  + D ++F + PE  +  +  +    + ++    +     R         LS+   
Sbjct: 382 VREMTLNDGHTF-VEPEKIEEEFKSILTMMMAVYRDFNITDYRFR---------LSYR-- 429

Query: 212 VLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              D   T+ +   D M +       +  DD+       E   A Y    DV  +    +
Sbjct: 430 ---DPKNTEKYFDDDEMWEKSQAQLKSAMDDLKLDYYEAEGEAAFYGPKLDVQTKT---A 483

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAV 328
           L   + +S   ++    F    ++ L    T+ GADG+D++  V +    +G M    A 
Sbjct: 484 LGNEETMSTIQLD----FLLPERFDL----TYIGADGQDNHRPVMLHRGIVGTMERFTAY 535

Query: 329 IESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +   + G    W   ++P ++ +I  N+ AH +   D  +K   +L  VG     +    
Sbjct: 536 LIEMYKGAFPTW---LSPLQVQIIPVNLGAHGEYA-DGVQK---KLQAVGLRANVETKEA 588

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           ++G     A     P  +++G   V    V ++
Sbjct: 589 KMGYLIREAQTNKIPYTLVLGDSEVDAQTVTVR 621


>gi|261749266|ref|YP_003256951.1| threonyl-tRNA synthetase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497358|gb|ACX83808.1| threonyl-tRNA synthetase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 408

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 4/163 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G     N+   + + Q ++G   +  P +    L+V SG +D YGK+  +  
Sbjct: 30  GLPLWLPRGTIFRRNLEEFLTDIQKKSGYEMIMTPHIGHKKLYVRSGHWDKYGKDSFKPI 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +++  +  P +     +++RS   SYR+LP  F +    +R E      G+ R R 
Sbjct: 90  QTPHSEEEFLLKPMNCPHHCEVYRSQEWSYRDLPKRFAEFGTVYRYEQSGELHGLTRVRC 149

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           F   DA+ F  T +     + K+      +F RLG     +R 
Sbjct: 150 FTQDDAHIF-CTYDQLLEEFKKVINLVFYVFRRLGFLEYTIRV 191


>gi|260681819|ref|YP_003213104.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685416|ref|YP_003216549.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
 gi|260207982|emb|CBA60134.1| putative dual-specificity prolyl/cysteinyl-tRNA synthetase
           [Clostridium difficile CD196]
 gi|260211432|emb|CBE01531.1| putative dual-specificity prolyl/cysteinyl-tRNA synthetase
           [Clostridium difficile R20291]
          Length = 510

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 255 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSDNRGL 313

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 314 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKTKGVAVEVDDRDNYTTGWKFNEWEM 373

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G P++V +G K + +++  +  R T  ++ M LE
Sbjct: 374 KGAPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLE 408


>gi|62897187|dbj|BAD96534.1| threonyl-tRNA synthetase-like 1 variant [Homo sapiens]
          Length = 718

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 166/434 (38%), Gaps = 72/434 (16%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 296 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 355

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 356 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 415

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-----GSK 171
           F    +S+R LP          R E      G+ R R F   DA+ F  T +      S 
Sbjct: 416 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSC 475

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             + +   + L    RL L + P    SG +G                   C  D  +  
Sbjct: 476 LDFLRSVYAVLGFSFRLALSTRP----SGFLGDP-----------------CLWDQAEQV 514

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +     +F +   LNS      A Y    DVH   L D+L        R  + G I    
Sbjct: 515 LKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LHDAL-------GRPHQCGTI---Q 558

Query: 292 TKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + LP+     +KG  G     V +    +G++  +  V+  S  GK   WP  ++PF+
Sbjct: 559 LDFQLPLRFDLQYKGQAGALGRPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQ 615

Query: 349 ISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +I + +  ++  ++A + + A       D    D G  +  +   A L  +  Q +VG
Sbjct: 616 VVVIPVGSEQEEYAKEAQQSLRAAGLVSDLDA---DSGLTLSRRIRRAQLAHYNFQFVVG 672

Query: 408 SKFVSDSKVEIKHR 421
            K  S   V I+ R
Sbjct: 673 QKEQSKRTVNIRTR 686


>gi|326203342|ref|ZP_08193207.1| prolyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986600|gb|EGD47431.1| prolyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 478

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/316 (19%), Positives = 123/316 (38%), Gaps = 66/316 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E +  + + + I+SYR+LP  + Q    +++    RP    +R+ EFL ++ ++   
Sbjct: 114 PTSETLFCEHYSNSIQSYRDLPKLYNQWCSVVRWEKTTRP---FLRTLEFLWQEGHTAHA 170

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E ++    KM   Y  +     + +IP+                              
Sbjct: 171 TAEEAQEETIKMLNVYADVLE--NVLAIPV------------------------------ 198

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                 I    TD +     +       A Y   S +H+ K   S              G
Sbjct: 199 ------IKGRKTDKEKFAGAH-------ATYTIESLMHDGKALQS--------------G 231

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               FG  ++      +   + +  YV   S+G+   R++ A+I    D  G++ P +VA
Sbjct: 232 TSHNFGDGFAKAFDIQYTDKNNQLQYVHQTSWGV-TTRLIGAIIMVHGDDSGLVLPPAVA 290

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ +I +  H +   +   ++  RLS     V  DD  +  G +F+  ++ G P+++ 
Sbjct: 291 PTQLIIIPVSQHKEGVLEKANELKDRLS-AKFRVKMDDSDKMPGWKFSEYEMKGVPMRLE 349

Query: 406 VGSKFVSDSKVEIKHR 421
           +G K +  ++  +  R
Sbjct: 350 IGPKDIEKNQAVLVRR 365


>gi|254304252|ref|ZP_04971610.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324444|gb|EDK89694.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 637

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 90/447 (20%), Positives = 182/447 (40%), Gaps = 56/447 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R K  L +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R+
Sbjct: 226 RLKKHLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMVIRNVLIDLWRK 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  +   +++  P + + +LW  SG + +Y +E +  ++ ++      P +       F+
Sbjct: 282 EHEKAKYLQLETPIMLNKELWEVSGHWFNY-RENMYTSEIDELEFAIKPMNCPGGVLSFK 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +       
Sbjct: 341 HQLHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEI---- 395

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    +G+ ++  +  S   G     E+ +   T   +   S++  D    +    
Sbjct: 396 ---------IGVVNLIDKFYSKLFG----FEYEIELSTKPEKAIGSQEIWDMAEAALAGA 442

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
            D +     I     A Y    D    K+ D+             +G ++  GT    ++
Sbjct: 443 LDKLGRKYKINPGDGAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFN 486

Query: 296 LP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP     T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++
Sbjct: 487 LPERFDVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVL 543

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFV 411
            +   +  C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V
Sbjct: 544 TL---NDECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEV 600

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYA 438
            + +V I+   +  +   SL+E  NY 
Sbjct: 601 ENKEVNIRRFGSKDQFSKSLDEFYNYV 627


>gi|85059397|ref|YP_455099.1| threonyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123738953|sp|Q2NT31|SYT_SODGM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84779917|dbj|BAE74694.1| threonyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 642

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 84/414 (20%), Positives = 153/414 (36%), Gaps = 44/414 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTLFRELETFVRMKLKAYQYQEVKGPFMMDRVLWEKTGHWDNYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P         
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVRDEVNNCIKMVYDMYGTFGFEKILVKLSTRP--------- 424

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-KLFD 269
                 G   V+   +           D    ++ N I  ++     A      E  L D
Sbjct: 425 --EKRIGSNDVWGRAE----------QDLAAALTENGIAFEYQPGEGAFYGPKIEFTLLD 472

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVA 326
            L        R  + G +      +SLP  ++A++ G + +     M    I G+M    
Sbjct: 473 CLD-------RAWQCGTV---QLDFSLPGRLNASYVGENNERVVPVMIHRAILGSMERFI 522

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + G    +P  + P ++ ++NI  +     +   K+  +LS  G  V  D   E
Sbjct: 523 GILTEEYAG---FYPTWLVPTQVVVMNITDNQS---EYVAKLTEKLSAAGIRVKADLRNE 576

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +IG +     L   P  ++ G K V   KV ++ R       + + E+I    H
Sbjct: 577 KIGFKIREHTLRRVPYMLVCGDKEVEACKVAVRTRRGKDLGSIDVNEIITKLQH 630


>gi|238787089|ref|ZP_04630889.1| Threonyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238724877|gb|EEQ16517.1| Threonyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 642

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 147/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHVF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                D    +E+ D    ++ N I   +     A      E  
Sbjct: 432 ---------------------DLWTRAED-DLAAALTENGIPFDYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  +SA++ G +       M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D 
Sbjct: 520 RFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|46447649|ref|YP_009014.1| threonyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|73919812|sp|Q6M9L0|SYT_PARUW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46401290|emb|CAF24739.1| probable threonine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 650

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 89/217 (41%), Gaps = 22/217 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRT------GMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           Y   + +   RD ++   KL L +      GM   H KG+  W        + + A IRE
Sbjct: 235 YLHQLEEAKKRDHKLLGAKLDLFSLKEEAPGMPFIHPKGLIVW--------NQLVAYIRE 286

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
             +R   IE+  PT+ + +LW  SG + +Y + M  ++   D+     P +       ++
Sbjct: 287 CLSRHDYIEIKTPTMMTKELWEISGHWGNYRQNMF-ISQIEDRDFAIKPMNCPGCMLYYK 345

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           SH  SYR LP    +I    R E      G+ R R F   DA+ F + P   +     + 
Sbjct: 346 SHTHSYRELPLRIAEIGNVHRYEPSGSLSGLFRVRSFHQDDAHIF-MKPSDIQQEILGVL 404

Query: 179 VSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIV 212
                I+   GL     +  R E   IG D  HE+ V
Sbjct: 405 ALADEIYSTFGLSYRLELSTRPEKNTIGTD--HEWEV 439


>gi|238797380|ref|ZP_04640880.1| Threonyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238718811|gb|EEQ10627.1| Threonyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 642

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 145/408 (35%), Gaps = 70/408 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA--ATSDVHNE 265
                                                     EQWT   +  A +   N 
Sbjct: 432 ------------------------------------------EQWTRAESDLAAALTENG 449

Query: 266 KLFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQM 314
             FD  P         IE      +   +  GT    +SLP  +SA++ G +       M
Sbjct: 450 IPFDYQPGEGAFYGPKIEFTLHDCLDRAWQCGTVQLDFSLPGRLSASYIGENNDRQVPVM 509

Query: 315 GSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               I G++     ++   + G    +P  +AP ++ ++NI        D  +++  +L 
Sbjct: 510 IHRAILGSIERFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQ 563

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 564 DAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|296449824|ref|ZP_06891591.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296877888|ref|ZP_06901908.1| proline--tRNA ligase [Clostridium difficile NAP07]
 gi|296261311|gb|EFH08139.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296431085|gb|EFH16912.1| proline--tRNA ligase [Clostridium difficile NAP07]
          Length = 510

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 255 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSDNRGL 313

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 314 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFNEWEM 373

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G P+++ +G K + +++  +  R T  ++ M LE
Sbjct: 374 KGVPVRIEIGPKDIENNQAMVFRRDTLEKDSMPLE 408


>gi|291060195|gb|ADD72930.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 582

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 162/426 (38%), Gaps = 65/426 (15%)

Query: 24  KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           KL    G+ H  + + G   W P G      +   +R   +  G  E+  P +    LW 
Sbjct: 186 KLGPALGLFHLDEENPGQVFWHPEGWTLYVAIQQYLRRVMHEDGYAEVHTPFVMPQSLWE 245

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG +D Y   M  L +   ++    P +     +IF+   +SYR+LP    +     R+
Sbjct: 246 RSGHWDKYRANMY-LTEGEKRSFALKPMNCPGHVEIFKQKTRSYRDLPLRLSEFGSCTRN 304

Query: 142 ELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGL--KSIPMRA 197
           E      GVMR R F+  DA+ F    E    S    F   L R++   G   + I ++ 
Sbjct: 305 EPSGSLHGVMRVRGFVQDDAHIF--CTEAQIASEVTRFCRLLARVYADFGFAQEQIRVKF 362

Query: 198 ESGP---IGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            + P   IG D + +     LA+  E      +       P E   +   +         
Sbjct: 363 STRPEQRIGDDATWDRAERALAEACEAAGLSYEH-----APGEGAFYGPKLEF------- 410

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP----MSATFKGADGK 308
                         L D+L        R  + G I      Y LP    ++A + G D +
Sbjct: 411 -------------ALIDTL-------EREWQCGTI---QVDYQLPSCERLNAEYVGEDNQ 447

Query: 309 DHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDAC 365
            H  V +    IG++ R +  +IE      G  +P  +AP +  +I +  A  +  +   
Sbjct: 448 RHMPVILHRTVIGSLERFIGILIEHY----GGAFPPWLAPVQAVVIPVAPAFLEYAQHVA 503

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++ AR  +V  DV      E++ ++   A     P  +IVG + +   +V ++ R TG 
Sbjct: 504 RELCARSLRVQADV----SAERMNAKIRTAQTQKVPYLLIVGERELRAQQVAVRPR-TGP 558

Query: 426 REDMSL 431
           +  M L
Sbjct: 559 QHSMGL 564


>gi|169824388|ref|YP_001691999.1| threonyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|238687735|sp|B0S169|SYT_FINM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167831193|dbj|BAG08109.1| threonyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 634

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 157/425 (36%), Gaps = 55/425 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   + P G   L+ +   ++E+    G  ++  P + +  LW +SG +D Y +
Sbjct: 255 IQEEGPGFPFFHPNGMVVLNELEKFLKEQLLERGYGQIKTPLILNEHLWHQSGHWDHYKE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      +++  + SYR LP    ++    R EL     G+
Sbjct: 315 NMYFTKIDGEDYAI--KPMNCPGSILVYKDELHSYRELPIKVAELGQVHRHELSGALHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            R R F+  DA+ F L PE  +   +K   F  Y  I+ + G K                
Sbjct: 373 FRVRTFVQDDAHVFCL-PEQIEEEVSKTIDFCDY--IYSKFGFK---------------- 413

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             + V   T       S +  D  I S     +       I E   A Y    D H E  
Sbjct: 414 --YEVELSTRPEDSMGSDEDWDLAISSLKNALEHKGLPYKINEGDGAFYGPKIDFHLEDA 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
                           +G  +  GT    + +P     T+  +DG      M    I G+
Sbjct: 472 ----------------IGRTWQCGTIQLDFQMPERFDMTYIASDGSKKRPAMIHRAILGS 515

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + GK  +W   ++P ++ ++ I        D   ++  ++   G  V  
Sbjct: 516 EERFMGILIEHYAGKFPLW---LSPVQVEILPISDK---FNDYAYELQQKMKARGLRVKV 569

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+IG +   + L      +I+G   + +++V ++ R  G     + +E IN     
Sbjct: 570 DDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRKRDIGDVGSKNTDEFINELVDE 629

Query: 442 FSNNR 446
           + N +
Sbjct: 630 YQNRK 634


>gi|291566329|dbj|BAI88601.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 622

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 156/404 (38%), Gaps = 47/404 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+   + G   +  P + +  LW  SG YD Y + M    
Sbjct: 244 GLVFWHPKGSRMRLLIEDYWRQAHLQGGYELLYTPHIANLALWKTSGHYDFYRENMFDQI 303

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  +++    P +       ++SH+ SYR LP  + ++   +R E      G+MR R F 
Sbjct: 304 EIENQSYQLKPMNCPFHVLTYQSHLHSYRELPIRWAELGTVYRYERSGVLHGLMRVRGFT 363

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F L PE        +     +I    G     +   + P   +G D        
Sbjct: 364 QDDAHIFCL-PEQVADEILGVLNLTEKILSDFGFSKYEVNLSTRPSKSVGND-------- 414

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              G  Q+       D  I + N    D +    + E   A Y    D+   K+ D++  
Sbjct: 415 ---GVWQLAT-----DALISALNIKGWDYV----VDEGGGAFYGPKIDI---KIQDAIAR 459

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIE 330
             + S   ++          ++LP   +  +  ADG      M    I G++     ++ 
Sbjct: 460 LWQCSTIQVD----------FNLPERFNMEYVAADGSRQRPIMIHRAIFGSLERFFGILI 509

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            ++ G   +W   +AP  + ++ +       RD  + I   L +       D+ GE++G 
Sbjct: 510 ENYAGDFPLW---LAPVMVRVLVVSDR---FRDYAKSIVQSLKQQNIRAEVDNTGERLGK 563

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           Q    +L   P+ V++G + + +  + ++ R  G    M+L ++
Sbjct: 564 QIRACELEKIPVTVVIGQRELDNQSLSVRTRSRGDIGTMTLPQL 607


>gi|15639823|ref|NP_219273.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026061|ref|YP_001933833.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094415|sp|O83809|SYT_TREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689347|sp|B2S475|SYT_TREPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3323150|gb|AAC65804.1| threonyl-tRNA synthetase (thrS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018636|gb|ACD71254.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 592

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 162/426 (38%), Gaps = 65/426 (15%)

Query: 24  KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           KL    G+ H  + + G   W P G      +   +R   +  G  E+  P +    LW 
Sbjct: 196 KLGPALGLFHLDEENPGQVFWHPEGWTLYVAIQQYLRRVMHEDGYAEVHTPFVMPQSLWE 255

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG +D Y   M  L +   ++    P +     +IF+   +SYR+LP    +     R+
Sbjct: 256 RSGHWDKYRANMY-LTEGEKRSFALKPMNCPGHVEIFKQKTRSYRDLPLRLSEFGSCTRN 314

Query: 142 ELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGL--KSIPMRA 197
           E      GVMR R F+  DA+ F    E    S    F   L R++   G   + I ++ 
Sbjct: 315 EPSGSLHGVMRVRGFVQDDAHIF--CTEAQIASEVTRFCRLLARVYADFGFAQEQIRVKF 372

Query: 198 ESGP---IGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            + P   IG D + +     LA+  E      +       P E   +   +         
Sbjct: 373 STRPEQRIGDDATWDRAERALAEACEAAGLSYEH-----APGEGAFYGPKLEF------- 420

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP----MSATFKGADGK 308
                         L D+L        R  + G I      Y LP    ++A + G D +
Sbjct: 421 -------------ALIDTL-------EREWQCGTI---QVDYQLPSCERLNAEYVGEDNQ 457

Query: 309 DHY-VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDAC 365
            H  V +    IG++ R +  +IE      G  +P  +AP +  +I +  A  +  +   
Sbjct: 458 RHMPVILHRTVIGSLERFIGILIEHY----GGAFPPWLAPVQAVVIPVAPAFLEYAQHVA 513

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++ AR  +V  DV      E++ ++   A     P  +IVG + +   +V ++ R TG 
Sbjct: 514 RELCARSLRVQADV----SAERMNAKIRTAQTQKVPYLLIVGERELRAQQVAVRPR-TGP 568

Query: 426 REDMSL 431
           +  M L
Sbjct: 569 QHSMGL 574


>gi|332967807|gb|EGK06908.1| threonine--tRNA ligase [Desmospora sp. 8437]
          Length = 295

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  WLP G      +   I +++ R G   +  P L S +L+  SG +D Y ++M  
Sbjct: 16  GQGLPLWLPNGATIRRIIERYIIDKEERLGYQHVYTPHLASVELYKISGHWDHYHEDMYP 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +++ ++  P +      I+++ +KSYRNLP    ++ +  R E+     G+ R R 
Sbjct: 76  PMKMDNEELVLRPMNCPHHMMIYKNDLKSYRNLPVRIAELGMMHRHEMSGALSGLQRVRA 135

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             + DA+ F   P+  K  + ++      ++   G+K    R
Sbjct: 136 MTLNDAHIF-CRPDQIKSEFIRVVQLIEEVYRDFGIKDFWYR 176


>gi|282882529|ref|ZP_06291150.1| threonine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297671|gb|EFA90146.1| threonine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 636

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 86/420 (20%), Positives = 161/420 (38%), Gaps = 54/420 (12%)

Query: 13  ENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   +AE   H+ +   L    +H+   G   + P G    +N+ +  +      G  E+
Sbjct: 232 EKREEAEKRDHRKLGRELDLFSMHEEGPGFPFFHPNGMITRNNLLSWWKNVLQERGYGEI 291

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + + DLW  SG +D Y KE +   + +++     P +    T I+ +   SYR+LP
Sbjct: 292 LTPVILNEDLWHRSGHWDHY-KENMYFTEIDEEGYAVKPMNCPGSTLIYSTTPHSYRDLP 350

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             + +  L  R EL     G+ R R F   DA+ + L  +     +  + ++ L ++   
Sbjct: 351 LRYAEFGLVHRHELSGALHGLFRVRSFTQDDAHIYCLPNQIKSEVFEIIDLANL-LYDTF 409

Query: 189 GLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           G K S+ +        GD       L    E +    +   +  +P             +
Sbjct: 410 GFKYSVELSTRPDDYMGD-------LGSWNEAEKALKEALEEKGMPY------------T 450

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLPMS--ATF 302
           I E   A Y    D H E                  +G  +  GT    + LP +   T+
Sbjct: 451 INEGDGAFYGPKIDYHLEDA----------------IGRTWQCGTIQLDFQLPQNFELTY 494

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG K   V +     G++     ++     GK  +W   ++P ++ +I +    +  
Sbjct: 495 VAEDGSKKRPVMLHRALFGSVERFMGILIEHFAGKFPLW---LSPVQVEIIPV---SEKF 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +    +++ +L K G  V  D+  E++G +   A L      +++G K     K+ ++ R
Sbjct: 549 KPYAGEVFDQLKKAGIRVKIDERAEKVGYKIREAQLKKVNYMLVIGEKETESHKLSVRKR 608


>gi|33519811|ref|NP_878643.1| threonyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|33504156|emb|CAD83418.1| threonyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 410

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 8/193 (4%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    SH+L L    + + + G+  W   G      +   IR++  +    E+  PT+  
Sbjct: 11  DHRNLSHQLDLYH--LQEDAPGMVFWHVNGWTIFQELKNFIRKKLQQYQYQEVKSPTMID 68

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW ++G +D+Y + +      N K  I  P +      IF   +K+Y++LP    +  
Sbjct: 69  RVLWKKTGHWDNYYEHIFTTDSENRKYCI-KPMNCPGHIQIFNHGLKTYKDLPIRMAEFG 127

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R+EL     G+MR REF   DA+ F    +     Y+ + + Y  I+H    K I +
Sbjct: 128 SCHRNELSGSLHGLMRIREFTQDDAHIFCALTQIPNELYHCIKMMY-DIYHVFNFKKIIV 186

Query: 196 RAESGP---IGGD 205
           +  + P   IG D
Sbjct: 187 KLSTRPKKRIGED 199


>gi|15595065|ref|NP_212854.1| threonyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|218249246|ref|YP_002375218.1| threonyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|223889476|ref|ZP_03624062.1| threonyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|8928363|sp|O51662|SYT_BORBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701542|sp|B7J0G5|SYT_BORBZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2688663|gb|AAC67076.1| threonyl-tRNA synthetase (thrZ) [Borrelia burgdorferi B31]
 gi|218164434|gb|ACK74495.1| threonyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|223885162|gb|EEF56266.1| threonyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|312147875|gb|ADQ30534.1| threonyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 581

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 158/409 (38%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE--FI 211
             DA+    T         ++    + ++ + G  +      + P   +G D   E    
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFSNPKAYLSTKPDKSVGNDSDWEMSLK 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL +T            DF +P E            I +   A Y    D+   K+ DSL
Sbjct: 384 VLEET----------LSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSL 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAV 328
               ++S    +          ++LP   + T+   DGK+    M     +G++     +
Sbjct: 419 EREWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P ++ +I +   + +  D   K++ +    G  +  D+   ++
Sbjct: 469 LVEHYGGAFPLW---LSPVQVVIIPV---NNIVEDYAIKVFNKFKNEGIRIKLDNSSSRM 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++         P   I+G +  ++ ++ I+ R       M L+E + +
Sbjct: 523 NAKIREYQAKKIPYMFIIGEREATEERISIRTRTNEQINGMKLDEALKF 571


>gi|161621305|ref|YP_583315.2| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 635

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 16/202 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +T  + H  + + G+  W P G +    V   +R    +
Sbjct: 231 YLHMLEE----AEKRDHRRLGKTLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLGQ 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D+Y KE + + +   +     P +      IF   ++
Sbjct: 287 AGYEEVRTPQVMDRSLWERSGHWDNY-KENMFVTESEKRDYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEG---SKHSYNKMFV 179
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T E       ++N++  
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEEQIVEEAKAFNELAF 404

Query: 180 SYLRIFHRLGLKSIPMRAESGP 201
           S   I+   G K + ++    P
Sbjct: 405 S---IYDDFGFKDVAVKLSLRP 423


>gi|17232215|ref|NP_488763.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17133860|dbj|BAB76422.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 612

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 161/403 (39%), Gaps = 39/403 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+    +G   +  P + + DLW  SG +D Y + M    
Sbjct: 237 GLVFWHPKGASIRYIIEDYWRKCHLESGYQLLYTPHVANLDLWKTSGHFDFYQENMFDSM 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  ++A    P +       ++  + SYR LP  + ++   +R E      G+MR R F 
Sbjct: 297 EVENQAYQIKPMNCPFHVLTYKHQLHSYRELPLRWAELGTVYRYERSGALHGLMRVRGFT 356

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L  + +      + ++   I    G K+  +   + P     ++E   LA +
Sbjct: 357 QDDAHIFCLPHQIADEILGVLNLTE-HILSDFGFKNYEVNLSTRPDKSVGNNEVWELATS 415

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
              Q   +K +                  N IV E   A Y    D+   K+ D++    
Sbjct: 416 ALRQALDAKGW------------------NYIVDEGGGAFYGPKIDI---KIQDAIGRLW 454

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHD 334
           + S   ++    F    ++ +   AT    DG      M    I G++     ++  ++ 
Sbjct: 455 QCSTIQVD----FNLPERFDMEYIAT----DGSRQRPIMIHRAIFGSLERFFGILIENYA 506

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G   +W   +AP +I L+ +   D V R   E +   L K G  V  D  GE++G Q   
Sbjct: 507 GDFPLW---LAPVQIRLLPVS--DDV-RGYTESVAIALQKDGFRVEIDISGERLGKQIRT 560

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           A+L   P+  +VG K V +  + ++ R  G    ++L ++ N+
Sbjct: 561 AELEKIPVVGVVGKKEVENQNLSVRTRANGDLGAINLNDLTNH 603


>gi|226321417|ref|ZP_03796944.1| threonyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226233213|gb|EEH31965.1| threonyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 581

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 158/409 (38%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE--FI 211
             DA+    T         ++    + ++ + G  +      + P   +G D   E    
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFSNPKAYLSTKPDKSVGNDSDWEMSLK 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL +T            DF +P E            I +   A Y    D+   K+ DSL
Sbjct: 384 VLKET----------LSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSL 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAV 328
               ++S    +          ++LP   + T+   DGK+    M     +G++     +
Sbjct: 419 EREWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P ++ +I +   + +  D   K++ +    G  +  D+   ++
Sbjct: 469 LVEHYGGAFPLW---LSPVQVVIIPV---NNIVEDYAIKVFNKFKNEGIRIKLDNSSSRM 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++         P   I+G +  ++ ++ I+ R       M L+E + +
Sbjct: 523 NAKIREYQAKKIPYMFIIGEREATEERISIRTRTNEQINGMKLDEALKF 571


>gi|119897370|ref|YP_932583.1| threonyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|166223320|sp|A1K4E1|SYT_AZOSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119669783|emb|CAL93696.1| ThrS protein [Azoarcus sp. BH72]
          Length = 638

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 16/181 (8%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H+KG   W          V   +R   +R G  E+  P +    LW +SG +  Y
Sbjct: 261 GMVFWHAKGWTLW--------QQVEQYLRGTISRHGYQEVRTPQIVDRSLWEKSGHWGMY 312

Query: 90  GKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
              M    ++++D A+   P +      IF   +KSYR+LP    +     R+E      
Sbjct: 313 SDLMFTTQSEKHDYAV--KPMNCPCHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGG 204
           G+MR R F+  DA+ F  T E  +           +++   G + I ++  + P   +G 
Sbjct: 371 GIMRVRNFVQDDAHIF-CTDEQVQEEAAAFIALLQKVYADFGFRDIQIKLSTRPEKRVGA 429

Query: 205 D 205
           D
Sbjct: 430 D 430


>gi|22125796|ref|NP_669219.1| threonyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45442011|ref|NP_993550.1| threonyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596666|ref|YP_070857.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108807773|ref|YP_651689.1| threonyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108812050|ref|YP_647817.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145598020|ref|YP_001162096.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149365658|ref|ZP_01887693.1| threonyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|153950233|ref|YP_001400689.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162420291|ref|YP_001607032.1| threonyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165927513|ref|ZP_02223345.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939479|ref|ZP_02228025.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011794|ref|ZP_02232692.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210452|ref|ZP_02236487.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400748|ref|ZP_02306254.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424849|ref|ZP_02316602.1| threonyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024059|ref|YP_001720564.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186895722|ref|YP_001872834.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|218929522|ref|YP_002347397.1| threonyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229837960|ref|ZP_04458119.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895121|ref|ZP_04510297.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229898521|ref|ZP_04513666.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902362|ref|ZP_04517482.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270490458|ref|ZP_06207532.1| threonine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503566|ref|YP_003567628.1| threonyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|22654122|sp|Q8ZDW5|SYT_YERPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919846|sp|Q669Z0|SYT_YERPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122979581|sp|Q1C728|SYT_YERPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122980145|sp|Q1CIG3|SYT_YERPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225518|sp|A4TIL1|SYT_YERPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987327|sp|A7FHG1|SYT_YERP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238687259|sp|A9R0A8|SYT_YERPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688418|sp|B1JJ17|SYT_YERPY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691408|sp|B2K668|SYT_YERPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21958722|gb|AAM85470.1|AE013793_6 threonine tRNA synthetase [Yersinia pestis KIM 10]
 gi|45436874|gb|AAS62427.1| threonyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589948|emb|CAH21580.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108775698|gb|ABG18217.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Yersinia pestis
           Nepal516]
 gi|108779686|gb|ABG13744.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Yersinia pestis
           Antiqua]
 gi|115348133|emb|CAL21061.1| threonyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145209716|gb|ABP39123.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149292071|gb|EDM42145.1| threonyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|152961728|gb|ABS49189.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162353106|gb|ABX87054.1| threonyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165912528|gb|EDR31159.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920568|gb|EDR37845.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989259|gb|EDR41560.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207632|gb|EDR52112.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167049601|gb|EDR61009.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056036|gb|EDR65814.1| threonyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750593|gb|ACA68111.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186698748|gb|ACC89377.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|229680697|gb|EEO76793.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229688069|gb|EEO80140.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694326|gb|EEO84373.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701883|gb|EEO89906.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361608|gb|ACY58329.1| threonyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365651|gb|ACY62208.1| threonyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270338962|gb|EFA49739.1| threonine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294354025|gb|ADE64366.1| threonyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320015090|gb|ADV98661.1| threonyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 642

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 140/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P     S E 
Sbjct: 375 RVRGFTQDDAHVF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDEL 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+                 P E   +   I                       L D 
Sbjct: 434 WTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +SLP  +SA++ G +       M    I G+M     
Sbjct: 474 LD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D   E+
Sbjct: 524 ILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 578 IGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|170695920|ref|ZP_02887060.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139218|gb|EDT07406.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 635

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H +V    F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGHVQV----FNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIF 386


>gi|329904275|ref|ZP_08273747.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548052|gb|EGF32784.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 635

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 11/174 (6%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      V   +R      G  E+  P +    LW +SG +++Y KE
Sbjct: 256 QEEAPGMIFWHPKGWSVWQQVEQYMRRVYQDNGYQEVKAPQILDISLWEKSGHWENY-KE 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +   +   ++    P +      IFRS ++SYR+LP  + +     R+E      G+MR
Sbjct: 315 NMFTTESEKRSYALKPMNCPGHVQIFRSDMRSYRDLPLRYGEFGQCHRNEPSGSLHGIMR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL----GLKSIPMRAESGP 201
            R F   D + F      ++    +  V+Y  + H++    G  +I  +  + P
Sbjct: 375 VRGFTQDDGHIF-----CTEDQILEECVAYTALLHKVYADFGFANITYKVATRP 423


>gi|291398043|ref|XP_002715638.1| PREDICTED: threonyl-tRNA synthetase 2, mitochondrial [Oryctolagus
           cuniculus]
          Length = 718

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 156/419 (37%), Gaps = 73/419 (17%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IR E    G  E+  PTL S  LW +SG ++ Y 
Sbjct: 313 FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPTLFSTKLWEKSGHWEHYK 372

Query: 91  KEMLRL--ADRNDKA--------------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           ++M  L  +D +  A              +   P +      +F    +S+R LP     
Sbjct: 373 EDMFALQPSDSDSSACSQSDHPTSQPPDTLALKPMNCPAHCLMFAHRPRSWRELPLRLAD 432

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKS 192
                R E      G+ R R F   DA+ F    +     Y  +   +LR ++  LG  S
Sbjct: 433 FGALHRAEASGSLGGLTRLRCFQQDDAHIFCAPDQLEAEIYGCL--DFLRSVYAVLGF-S 489

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P G                       F+  P   +  +     SL +  E W
Sbjct: 490 FHLALSTRPSG-----------------------FLGEPCLWDQAEQLLQQSLEAFGEPW 526

Query: 253 ------TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKG 304
                  A Y    DVH   L D+L        R  + G I      + LP+     +KG
Sbjct: 527 DLSPGDGAFYGPKIDVH---LRDAL-------GRPHQCGTI---QLDFQLPLRFDLQYKG 573

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G  +  V +    +G++  +  V+  S  GK   WP  ++PF++++I +    +   +
Sbjct: 574 QAGNLERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQVAVIPVGTEQE---E 627

Query: 364 ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              ++   L   G     D D G  +  +   A L  +  Q +VG K  S+  V ++ R
Sbjct: 628 YAREVQQTLQAAGLASDLDADPGLTLSRRVRRAQLAHYNFQFVVGRKEQSNRTVNVRTR 686


>gi|298206753|ref|YP_003714932.1| threonyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849384|gb|EAP87252.1| threonyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 648

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 158/405 (39%), Gaps = 43/405 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    + +   +++ Q + G   +  P +   +L+V SG Y  YG++  + 
Sbjct: 261 QGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVTPHIGQKELYVTSGHYAKYGEDSFQP 320

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I+ +   SYR+LP  + +    +R E      G+ R R
Sbjct: 321 ISTPAEGEEFLLKPMNCPHHCEIYNNSPWSYRDLPKRYAEFGTVYRYEQSGELHGLSRVR 380

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TP+     + K+    + +F  LG ++   +              + L
Sbjct: 381 GFTQDDAHIF-CTPDQLDEEFKKVIDLTMYVFSSLGFENFTTQ--------------VSL 425

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDI--ISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D      +  K+  +    +EN     +    LN IVE   A +            D +
Sbjct: 426 RDPENPDKYIGKE--ENWEKAENAILSAVKDKGLNYIVETGEAAFYGPK-------LDFM 476

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
              K    R  ++G I      Y+LP     T+KG+D + H  V +     G+M    A+
Sbjct: 477 V--KDALGRSWQLGTI---QVDYNLPERFDLTYKGSDNELHRPVMIHRAPFGSMERFVAI 531

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     G   +W   + P +  ++++    +   +  +K+   L         D   E +
Sbjct: 532 LLEHTAGNFPLW---LMPEQAIILSL---SEKYENYSKKVLNLLENHEIRALTDHRSETM 585

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G +   A++   P  +IVG +  +D  V ++         M++EE
Sbjct: 586 GKKIREAEVNKIPYMLIVGEQEENDGTVSVRKHGGEDLGTMTVEE 630


>gi|307131177|ref|YP_003883193.1| threonyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306528706|gb|ADM98636.1| threonyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 642

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 150/415 (36%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  +      P    P E   +   I                     
Sbjct: 432 ----DMWDRAEEDLAAALTENGIPFDYQPGEGAFYGPKIEFT------------------ 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L D L        R  + G +      +SLP  +SA++ G + +     M    I G+
Sbjct: 470 --LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYVGENNERQVPVMIHRAILGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP +  ++NI        D   ++  +L   G  V  
Sbjct: 518 MERFIGILTEEFAG---FFPTWLAPVQAVVMNIT---DTQSDYVSELTRKLQDAGIRVKA 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  ++ G K V   KV ++ R       + + EVI 
Sbjct: 572 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVSEVIT 626


>gi|212223716|ref|YP_002306952.1| prolyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212008673|gb|ACJ16055.1| prolyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 482

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   ++      ++  +G   YV   ++G+ + R++AAVI    D +G+
Sbjct: 221 GRTLQIGTMHNYRQNFAKAYEILYETENGDHEYVHQTTFGM-SERLLAAVIAIHGDDRGM 279

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P ++AP ++ ++ I   D          +I   L   G  V  D+   + G +F   +
Sbjct: 280 VLPPTIAPIQVVIVPIPKKDAGADVFTYAREIAEELRTAGLRVHVDERDIRPGRKFYDWE 339

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L G PL++ VG + V   K  +  R T  +E +  + ++ 
Sbjct: 340 LKGVPLRIEVGPRDVEGRKAVLARRDTLTKETVERDRIVE 379



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  WLP G K + N+   I  E  RTG  E+  P L    +   E+     +  E+  
Sbjct: 33  KGMNIWLPYGLKIMRNIERFIHAEMERTGHDEVLFPALIPETEFQKEAEHIAGFEGEVFW 92

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI   +R E +    ++R
Sbjct: 93  VTHAGHDPLDIKLILRPTSETAMYSMFALWIRSHADLPFKVYQIVNTYRYETKHTRPLIR 152

Query: 152 SREF 155
            RE 
Sbjct: 153 VREI 156


>gi|91784428|ref|YP_559634.1| threonyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123358618|sp|Q13WF7|SYT_BURXL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91688382|gb|ABE31582.1| Ser-tRNA(Thr) hydrolase [Burkholderia xenovorans LB400]
          Length = 635

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL  +  + H    S G+  W P G      V   +R   N 
Sbjct: 231 YLHMLEE----AEKRDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRS 120
            G +E+  P +    LW  SG + +Y + M    +++ D A+  +  P H +V    F  
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGHVQV----FNH 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            ++SYR+LP  + +     R+E      G+MR R F+  DA+ F
Sbjct: 343 GLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIF 386


>gi|54298706|ref|YP_125075.1| threonyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|73919801|sp|Q5X1H3|SYT_LEGPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53752491|emb|CAH13923.1| Threonyl tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 637

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 146/396 (36%), Gaps = 54/396 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 259 APGMVFWHPKGWTIYQELEHYMRNRLVDFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF- 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +  ++     P        I+   +KSYR+LP    +     R E      G+MR R 
Sbjct: 318 VTETENRHYAVKPMSCPCHVQIYNHGLKSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRN 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
            +  DA+ F  T +  +     M      ++   G   I  R    P   +G D      
Sbjct: 378 MVQDDAHIF-CTEDQIQSEVAMMLELVQSVYKDFGFTEIKYRLALRPEKRVGSD------ 430

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D  ET +                    +  L   +E   AP       +  K+  SL
Sbjct: 431 DVWDKAETAL-------------------KLAMLGRNIEWVDAP--GEGAFYGPKIECSL 469

Query: 272 PENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVV 325
            +          +G I+  GT    +S+P  + A++   DG K   V +    +G+    
Sbjct: 470 SDC---------LGRIWQCGTIQVDFSMPARLEASYVAEDGSKQTPVMLHRAILGSFERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P +  ++ I        +  EK+   L K G    +D   
Sbjct: 521 MGILIEHYAGKLPLW---LSPVQAVVLTISEKQN---EYAEKVRKTLQKRGIRANFDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  ++VG K V + +V ++ R
Sbjct: 575 EKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTR 610


>gi|262067494|ref|ZP_06027106.1| threonine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291378856|gb|EFE86374.1| threonine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 637

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/433 (19%), Positives = 174/433 (40%), Gaps = 52/433 (12%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    I ++  G   +LP G    + +  + R+E  + G +++  P 
Sbjct: 236 EAEKRDHRKLGKELELFFISEYGPGFPFFLPKGMVFRNVLIDLWRKEHEKAGYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y +E +  ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNY-RENMYTSEIDELEFAIKPMNCPGGVLSFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TP+  +     +     + + +L    
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNLIDKFYSKL---- 409

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                           E+ +   T   +   S++  D    +     D +     I    
Sbjct: 410 -------------FGFEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGD 456

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG 307
            A Y    D    K+ D+             +G ++  GT    ++LP     T+ G DG
Sbjct: 457 GAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFNLPERFDVTYIGEDG 500

Query: 308 KDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++   + G   +W   +AP ++ ++ +   +  C    +
Sbjct: 501 EKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTL---NDECIPYAK 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I+   +  
Sbjct: 555 EIMDKLQELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKEVNIRRFGSKD 614

Query: 426 REDMSLEEVINYA 438
           +   SL+E  +Y 
Sbjct: 615 QFPKSLDEFYDYV 627


>gi|24373852|ref|NP_717895.1| threonyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|73919825|sp|Q8EER9|SYT_SHEON RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24348259|gb|AAN55339.1|AE015671_6 threonyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 642

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVQAEVSSCIQMVYDTYSTFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   + +     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRANNIEFTILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPSRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  E++     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVEEVVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|114563199|ref|YP_750712.1| threonyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122299726|sp|Q082E1|SYT_SHEFN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114334492|gb|ABI71874.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella
           frigidimarina NCIMB 400]
          Length = 642

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++  +    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELEKFIRQKLGQYTYQEVKGPLMMDRVLWERSGHWDKYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTNSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHVF-CTDDQVQEEVSACIQMVYDTYATFGFDNIVVKLSTRPEKRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   + +     +P E   +   I                       L
Sbjct: 432 -DMWDRAEDALKQALANNNIKYEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPTRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   +P  +AP ++ ++NI        D  E+I     + G    +D  
Sbjct: 521 FIGILIEEYAGK---FPTWLAPMQVVVMNITDKQA---DYVEEIVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|261821451|ref|YP_003259557.1| threonyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261605464|gb|ACX87950.1| threonyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 642

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/409 (20%), Positives = 148/409 (36%), Gaps = 42/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    +W ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKSYQYQEVKGPFMMDRVMWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P     S E 
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDEM 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+          +      P E   +   I                       L D 
Sbjct: 434 WDRAEADLAAALTENNIEFAYQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      +SLP  ++A++ G   +     M    I G+M     
Sbjct: 474 LD-------RAWQCGTV---QLDFSLPGRLNASYVGESNERQVPVMIHRAILGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++     G    +P  +AP ++ ++NI        D   ++  +L + G  V  D   E+
Sbjct: 524 ILTEEFAG---FFPTWLAPVQVVIMNITDSQA---DYVNELTQKLQEAGIRVKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +     L   P  ++ G K V   KV ++ R       + + EVI+
Sbjct: 578 IGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVSEVIS 626


>gi|309389087|gb|ADO76967.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Halanaerobium
           praevalens DSM 2228]
          Length = 643

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 91/429 (21%), Positives = 166/429 (38%), Gaps = 53/429 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            KY   + +   RD      +L L +  +    +G   + P G    + +    +EE  +
Sbjct: 230 EKYLNRVEEAKKRDHRKLGKELDLFS--MQDEGRGFPFFHPKGMALRNALVDFWKEEHYQ 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +D Y   M      +++A    P +      +++  + 
Sbjct: 288 AGYEEIQTPIILDESLWHQSGHWDHYQDNMY-FTKIDEEAHAVKPMNCPGGILVYKDSMH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R E+     G+MR R F   DA+ + L P   +   + +     
Sbjct: 347 SYRELPIRMAELGLVHRHEMSGALHGLMRVRSFTQDDAHIYCL-PSQIETELSGVIKLVD 405

Query: 183 RIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +I+   G   ++ +  +     GD   + +    T   Q    K+ +D+ + + +  F  
Sbjct: 406 KIYSAFGFNYNVELSTKPEKAMGD---DALWNKATDALQNAIEKNNLDYEVNAGDGAF-- 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
                         Y    D H   L DSL        R  + G I   F    ++ L  
Sbjct: 461 --------------YGPKIDFH---LEDSL-------GRTWQCGTIQLDFQMPERFDL-- 494

Query: 299 SATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              + G DG++H    +    YG    R +  +IE         +P  +AP ++ +I + 
Sbjct: 495 --NYIGQDGEEHRPVMIHRAIYG-SIERFIGILIEHFAGA----FPTWMAPVQVEIIPV- 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + DQ+  D   ++   L +    V  D   E++G +   A +   P  +IVGS+   +  
Sbjct: 547 SDDQI--DYAMQVKEELKQEKIRVEVDSRSEKVGYKIRDAQVKQVPYMLIVGSREEDNGT 604

Query: 416 VEIKHRLTG 424
           V ++ R  G
Sbjct: 605 VSVRDRREG 613


>gi|71021529|ref|XP_760995.1| hypothetical protein UM04848.1 [Ustilago maydis 521]
 gi|46100879|gb|EAK86112.1| hypothetical protein UM04848.1 [Ustilago maydis 521]
          Length = 759

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M H+ S G   WLP G +  + +   ++ E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 363 MFHELSPGSCFWLPHGARIYNTLQEFLKSEYRQRGFDEVVTPNMYNSKLWQTSGHWQNYK 422

Query: 91  KEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            +M  L  D+   A+   P +      +F S  +SY+ LP       +  R+E      G
Sbjct: 423 DDMFVLGVDKEQFAL--KPMNCPGHCLMFASRDRSYKELPLRLADFGVIHRNEASGALSG 480

Query: 149 VMRSREFLMKDAYSFDLTPE 168
           + R R F   DA+ F ++ +
Sbjct: 481 LTRVRRFCQDDAHIFCMSSQ 500


>gi|148358548|ref|YP_001249755.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|296108363|ref|YP_003620064.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166223351|sp|A5IAK9|SYT_LEGPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148280321|gb|ABQ54409.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|295650265|gb|ADG26112.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 637

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 147/396 (37%), Gaps = 54/396 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 259 APGMVFWHPKGWTIYQELEHYMRNRLVDFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF- 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +  ++     P        I+   +KSYR+LP    +     R E      G+MR R 
Sbjct: 318 VTETENRHYAVKPMSCPCHVQIYNHGLKSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRN 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
            +  DA+ F  T +  +     M      ++   G   I  R    P   +G D      
Sbjct: 378 MVQDDAHIF-CTEDQIQSEVAMMLELVQSVYKDFGFTEIKYRLALRPEKRVGSD------ 430

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D  ET        +   +   N ++ D            AP       +  K+  SL
Sbjct: 431 DVWDKAETA-------LKLAMQGRNIEWVD------------AP--GEGAFYGPKIECSL 469

Query: 272 PENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVV 325
            +          +G I+  GT    +S+P  + A++   DG K   V +    +G+    
Sbjct: 470 SDC---------LGRIWQCGTIQVDFSMPARLEASYVAEDGSKQTPVMLHRAILGSFERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P +  ++ I        +  EK+   L K G    +D   
Sbjct: 521 MGILIEHYAGKLPLW---LSPVQAVVLTISEKQN---EYAEKVRKTLQKRGIRANFDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  ++VG K V + +V ++ R
Sbjct: 575 EKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTR 610


>gi|66362768|ref|XP_628350.1| threonyl-tRNA synthetase (RNA binding domain TGS+HxxxH+tRNA
           synthetase) [Cryptosporidium parvum Iowa II]
 gi|46229397|gb|EAK90215.1| threonyl-tRNA synthetase (RNA binding domain TGS+HxxxH+tRNA
           synthetase) [Cryptosporidium parvum Iowa II]
          Length = 763

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G +  + +   IR E       E+  P + S DLW  SG Y +Y KE + 
Sbjct: 352 SPGSCFWLPAGARLYNKLMDFIRNEYRIREFTEVITPNIFSCDLWKTSGHYFAY-KENMF 410

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + D  +K     P +      +F+    SYR LP       +  R+E      G+ R R 
Sbjct: 411 IFDVEEKEWGLKPMNCPGHCVMFKHMNPSYRQLPIRLADFGVLHRNEFSGALNGLTRVRR 470

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F   DA+ F  TPE  +    K       I+ +LG 
Sbjct: 471 FQQDDAHIF-CTPEQIQEEVFKALDFLFFIYGQLGF 505


>gi|227498537|ref|ZP_03928681.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903993|gb|EEH89911.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 636

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 160/415 (38%), Gaps = 55/415 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+  +  G   +LP G    + +    RE   +    E+S P + +  LW  SG +D Y 
Sbjct: 256 MLSDYGPGFPFFLPNGMILRNELINYWREVHRKYNYYEVSTPMIMNRQLWETSGHWDHYK 315

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M     D  D A+   P +      ++ S   SYR+LP    ++ L  R EL     G
Sbjct: 316 ENMYFTKIDGEDYAI--KPMNCPGGMLVYDSEPHSYRDLPLRVGELGLVHRHELSGALHG 373

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           + R R F   DA+ F + P   +    +    +  ++   GL     +  R ++  +G D
Sbjct: 374 LFRVRCFTQDDAHIF-MMPNQIEDVIQETIRLFDEVYATFGLTYHAELSTRPDNS-MGDD 431

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHN 264
            + E    A          K   DF              L  +V +   A Y    D H 
Sbjct: 432 ATWEMTTNA--------LRKAMDDF-------------GLKYVVNEGDGAFYGPKIDFH- 469

Query: 265 EKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG 320
             L DS+        R  + G I        K++L    T+ G DG+ H  V +     G
Sbjct: 470 --LKDSI-------GRTWQCGTIQLDMLLPEKFNL----TYTGEDGQKHRPVMIHRVVYG 516

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++  ++ G    W   +AP ++ ++ I        +  + +  ++  +G    
Sbjct: 517 SIERFIGILIENYAGAFPAW---LAPEQVRVMPIT---DKFNEYAKSVVDKMEALGIRAH 570

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            DD  E+IG +     +   P  ++VG K  ++  V ++ R  G    M+++E I
Sbjct: 571 LDDRNEKIGYKIREGQVKKVPYMLVVGEKEATNGTVSVRSRSEGEMGAMAVDEFI 625


>gi|228933677|ref|ZP_04096525.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826004|gb|EEM71789.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 639

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             G++R R F   DA+ F +TPE  +     +      ++   G K
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQIDYVYKTFGFK 417


>gi|49479942|ref|YP_036488.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|218903521|ref|YP_002451355.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228927442|ref|ZP_04090498.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121934|ref|ZP_04251153.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|49331498|gb|AAT62144.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|218538936|gb|ACK91334.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228661583|gb|EEL17204.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228832235|gb|EEM77816.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 639

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             G++R R F   DA+ F +TPE  +     +      ++   G K
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQIDYVYKTFGFK 417


>gi|319426373|gb|ADV54447.1| threonyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 642

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVQEEVSACIQMVYDTYSTFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   + +     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRANNIEFTLLPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPNRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  ++I     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVQEIVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|323493467|ref|ZP_08098589.1| threonyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323312290|gb|EGA65432.1| threonyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 642

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 56/426 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +RE+    G  E+  P +    LW  SG +D Y +
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFVREKLTEYGYQEVKGPLIMDRVLWERSGHWDKYAE 316

Query: 92  EMLRLADRN-DKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M   +  N D A+  +  P H      IF   +KSYR+LP    +     R+E      
Sbjct: 317 AMFTTSSENRDYALKPMNCPGH----VQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALH 372

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGG 204
           G+MR R F   DA+ F  T    +             +   G  +I ++  + P   +G 
Sbjct: 373 GIMRVRGFTQDDAHIF-CTESQIQDEVTSCIKMVYDTYQTFGFDNIVVKLSTRPEKRVGS 431

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D       + D  E  +  S + MD P                I E   A Y    +   
Sbjct: 432 D------EIWDQSEEALKQSLEAMDIPY--------------EIQEGEGAFYGPKIEF-- 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L D L        R  + G +      ++LP  + AT+   + +     M    I G+
Sbjct: 470 -TLHDCLD-------RAWQCGTV---QLDFNLPGRLGATYVDENNERQVPVMIHRAILGS 518

Query: 322 M-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R +  +IE  +      +P  ++P +  ++NI        D  +++  +L K G    
Sbjct: 519 LERFIGILIEEYYG----FFPTWLSPEQAVIMNITDKQS---DYVQEVAQKLQKCGIRAK 571

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D   E+IG +     L   P  ++ G + +   ++ ++ R         +++ I+Y   
Sbjct: 572 ADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGKDLGKFKVDDFISYIQD 631

Query: 441 RFSNNR 446
             S+ +
Sbjct: 632 EISSRK 637


>gi|223938078|ref|ZP_03629976.1| threonyl-tRNA synthetase [bacterium Ellin514]
 gi|223893292|gb|EEF59755.1| threonyl-tRNA synthetase [bacterium Ellin514]
          Length = 618

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 19/173 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--- 94
           G+  WLP G   ++ +  + +E +   G + +  P L    ++  SG    Y + M    
Sbjct: 226 GLPLWLPKGTMIVEELENLAKETEFAAGYVRVKTPHLAKEKMYKTSGHLPYYAESMFPPM 285

Query: 95  ----RLADRNDKAMIY------GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
               +  D N++A  Y       P H      IF +   SYR+LP    +    +R E  
Sbjct: 286 ELKEKGGDSNEEAERYYLKAMNCPHHHR----IFAAEPHSYRDLPLRLAEYGTCYRYEQS 341

Query: 145 PR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              FG+MR R   M DA+ +  T E     +N +   YL+ F   GL+   MR
Sbjct: 342 GELFGLMRVRSLNMNDAHIY-CTEEQFADEFNAVNEMYLKYFKIFGLEKYQMR 393


>gi|157691545|ref|YP_001486007.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157680303|gb|ABV61447.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 643

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/418 (19%), Positives = 171/418 (40%), Gaps = 43/418 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP  Q   + + A  RE +++    E+S P + + +LW +SG +D Y 
Sbjct: 259 MFSEEAPGMPFYLPKSQIVRNELMAFSREVRSKAQYEEVSTPFMMNQELWEKSGHWDHYH 318

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M   ++ +  +    P +      +F++ + SYR+LP    +     R E      G+
Sbjct: 319 ENMY-FSEVDHTSFALKPMNCPGHMLMFKNSLFSYRDLPIRMAEFGQVHRHEFSGALNGL 377

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F L  +  +    ++F     ++   G +    +  R E   +G D 
Sbjct: 378 FRVRTFCQDDAHIF-LREDQIEAEIKRIFQLVDHVYRTFGFEYSVELSTRPEKA-LGDD- 434

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                 + D  E+ +   K+ +D        D+     LN   E   A Y    D H   
Sbjct: 435 -----AIWDISESAL---KNVLD----RLKVDY----QLN---EGDGAFYGPKIDFH--- 472

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           + D+L  + + +   ++    F    K+ L         + K   V + S   G++    
Sbjct: 473 IKDALQRSHQCATIQLD----FQMPEKFDL---TYINEKNEKVRPVVIHSAIFGSLDRFL 525

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++     G   +W   +AP ++ +I +    ++  D C ++  +L K+G  V  D+  E
Sbjct: 526 GILIEHFAGAFPLW---LAPVQVQIIPV---SKIHLDHCLEVQQQLRKIGIRVTIDERDE 579

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++G +   A +   P   ++G   + +  + I+         +S+++  + A+ +  +
Sbjct: 580 KLGYKMREAQMQKIPYIAVIGDTEMQEKTLNIRQHGEKTSNQLSIDDFQHMAAQQIKD 637


>gi|150403636|ref|YP_001330930.1| prolyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|171472898|sp|A6VK03|SYP_METM7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150034666|gb|ABR66779.1| prolyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 460

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G +   G  ++      F+  DG+  +V    YGI   R +A++I    D KG+
Sbjct: 212 GKTMQIGTVHNLGQNFAKTFELEFETPDGEKDFVYQTCYGISD-RAIASLISVHGDEKGL 270

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  VAP +I LI +  K  +++  +  +++ + L K    V  DD   + G ++   +
Sbjct: 271 VIPVDVAPIQIVLIPLLFKGKEEIVMEKIKELNSTL-KSEFRVHLDDRDIRPGRKYNDWE 329

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + G PL++ +G + + + +  I  R TG
Sbjct: 330 IKGVPLRIELGPRDIENGQALIVRRDTG 357



 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP G K       I+R+  + TG  E   P L   +L  + G +    ++ +  
Sbjct: 24  KGCGVYLPYGFKIRRYSFEILRKLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFW 83

Query: 97  ADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                K      +   PT E  M  + +  IK + +LP   YQ+   FR E +    ++R
Sbjct: 84  VTHGGKTPLEVKLALRPTSETTMYYMMKQWIKVHTDLPLKLYQVVNTFRYETKHTRPLIR 143

Query: 152 SREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPI-GGDLSH 208
            RE +  K+A++   T E       +    Y   F  + +   I  R E     G D + 
Sbjct: 144 LREIMSFKEAHTAHATKEDCDAQIKEALNLYGEFFDEICVPYIISKRPEWDKFPGADYTM 203

Query: 209 EFIVLADTGET----------QVFCSKDFMDFPIPSENTDF 239
            F  +   G+T          Q F     ++F  P    DF
Sbjct: 204 AFDTIYPDGKTMQIGTVHNLGQNFAKTFELEFETPDGEKDF 244


>gi|67605980|ref|XP_666722.1| threonyl-tRNA synthetase [Cryptosporidium hominis TU502]
 gi|54657772|gb|EAL36495.1| threonyl-tRNA synthetase [Cryptosporidium hominis]
          Length = 763

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G +  + +   IR E       E+  P + S DLW  SG Y +Y KE + 
Sbjct: 352 SPGSCFWLPAGARLYNKLMDFIRSEYRIREFTEVITPNIFSCDLWKTSGHYFAY-KENMF 410

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + D  +K     P +      +F+    SYR LP       +  R+E      G+ R R 
Sbjct: 411 IFDVEEKEWGLKPMNCPGHCVMFKHMNPSYRQLPIRLADFGVLHRNEFSGALNGLTRVRR 470

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F   DA+ F  TPE  +    K       I+ +LG 
Sbjct: 471 FQQDDAHIF-CTPEQIQEEVFKALDFLFFIYGQLGF 505


>gi|319649026|ref|ZP_08003235.1| ThrZ protein [Bacillus sp. BT1B_CT2]
 gi|317389020|gb|EFV69838.1| ThrZ protein [Bacillus sp. BT1B_CT2]
          Length = 639

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/403 (19%), Positives = 159/403 (39%), Gaps = 37/403 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP GQ     +  + RE QN     E+  P + +  LW +SG +D Y 
Sbjct: 258 MFSEEAPGMPFYLPKGQIVRKELEKLSRELQNNASYDEVHTPFMMNYRLWEKSGHWDHY- 316

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +  ++ ++      P +      IF++++ SYR+LP    +     R E      G+
Sbjct: 317 QENMYFSEVDNTKFAIKPMNCPGHMLIFKNNLYSYRDLPIRLAEYGQVHRHEFSGSLNGL 376

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R R F   DA+ F +  +  +    K+F    +++  +G                   E
Sbjct: 377 LRVRTFCQDDAHIF-VREDQIESEIKKVFHLIDQVYRTIGF------------------E 417

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           + V   T       +    +    S     DD+     + E   A Y    D H   + D
Sbjct: 418 YSVELSTRPDDSLGNNHLWEVSEGSLKNVLDDLAIKYQVNEGDGAFYGPKIDFH---IKD 474

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           +L  + +     ++    F    K+ L         + K   V +     G++     ++
Sbjct: 475 ALKRSHQCGTIQLD----FQMPEKFDL---TYINHNNEKVRPVVIHRAIFGSIDRFFGIL 527

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   +W   +AP ++ +I I     +  + C  I + L ++G  V  ++  +++G
Sbjct: 528 IEHFAGAFPVW---LAPIQVQIIPI---SHIHLEYCLGIKSELKQLGIRVQINESNQKLG 581

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +   A +   P  ++VG   + ++ V ++      ++++S+E
Sbjct: 582 YKIREAQVQKIPYTLVVGDNEIKENGVNVRKYGEEQQKNVSIE 624


>gi|196040031|ref|ZP_03107334.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196029290|gb|EDX67894.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
          Length = 639

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             G++R R F   DA+ F +TPE  +     +      ++   G K
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQIDYVYKTFGFK 417


>gi|222823074|ref|YP_002574647.1| threonyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254783514|sp|B9KEB1|SYT_CAMLR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222538295|gb|ACM63396.1| threonyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 603

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 160/418 (38%), Gaps = 53/418 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WL  G K    +  ++ +     G   +  P L  AD W  SG Y +Y KE +   
Sbjct: 229 GLPIWLSNGAKLRSKLEHLLYKAHRLRGYEPVRGPELLKADAWKISGHYANY-KENMYFT 287

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      I++S ++SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 288 QIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFT 347

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F + P   K           ++   L      M+A     G D   E      T
Sbjct: 348 QDDAHIFCM-PSQIKE----------QVLEILSFVDTLMKA----FGFDYEMEI----ST 388

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +     +  D    +     D+      I E   A Y    D+   K+ D+L     
Sbjct: 389 RPAKAIGDDEIWDIATNALKQALDEQGLKYGIDEGGGAFYGPKIDI---KITDAL----- 440

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--------HYVQMGSYGIGAMRVVAAV 328
              R  + G I      ++LP     +  D  +        H   +GS+     R +  +
Sbjct: 441 --KRKWQCGTI---QVDFNLPSRFKLEYTDADNEKKQPVMLHRAILGSFE----RFIGIL 491

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE          P  +AP +++++ I    Q   +  ++I  +L ++G D       E +
Sbjct: 492 IEHCAGE----LPFFIAPTQVAIVPI---SQNHHEYAKEIAKKLLELGIDSEVYSKNESL 544

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             +   A+    P+ +++G + V++  V ++ R    ++ ++L+E I     + S  R
Sbjct: 545 NKKIRTAEKAHVPMILVLGDEEVANKSVALRDRRAKEQKTLTLDEFITLTKEKLSEVR 602


>gi|253688275|ref|YP_003017465.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259516611|sp|C6DFY6|SYT_PECCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|251754853|gb|ACT12929.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 642

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 155/412 (37%), Gaps = 48/412 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    +W ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKSYQYQEVKGPFMMDRVMWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  +       +   N +FD      +        Y    +     L
Sbjct: 432 ----EMWDRAEADLAAA-------LTENNIEFDYQPGEGAF-------YGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      +SLP  ++A++ G   +     M    I G+M  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDFSLPGRLNASYVGESNERQVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        D   ++  +L + G  V  D  
Sbjct: 521 FIGILTEEFAG---FFPTWLAPVQVVIMNIT---DTQSDYVNELTRKLQEAGIRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI+
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVSEVIS 626


>gi|19386908|gb|AAL87030.1|AF332624_1 threonyl-tRNA-synthetase [Azotobacter vinelandii]
          Length = 461

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 8/190 (4%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  R  + H  + + G+  W P G      +   +R  Q   G +E+  P 
Sbjct: 58  EAEKRDHRKLGKRLDLFHTQEEAPGMVFWHPNGWTVYQVLEQYMRAVQRENGYLEIKTPQ 117

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG + +Y + M    +   +     P +      ++   +KSYR LP    
Sbjct: 118 VVDRVLWEKSGHWANYAENMF-TTESESRDYAIKPMNCPCHVQVYNQGLKSYRELPLRLA 176

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLK 191
           +     R+E      G+MR R F   DA+ F    E    + +  F+   R ++   G +
Sbjct: 177 EFGACHRNEPSGALHGIMRVRGFTQDDAHIF--CTEEQMQAESAAFIKLTRQVYADFGFQ 234

Query: 192 SIPMRAESGP 201
            I ++  + P
Sbjct: 235 DIQLKLSTRP 244


>gi|47458979|ref|YP_015841.1| prolyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|81828486|sp|Q6KIE6|SYP_MYCMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|47458307|gb|AAT27630.1| prolyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 476

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y G  ++     +FK  D    +V   S+GI + R++ A+I    D +GI
Sbjct: 223 GRALQSGTSHYLGQNFAKAFDISFKDKDNSKSFVYQTSWGI-STRLIGAIIMVHGDNRGI 281

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I P  +A  ++ +I + A+   +V + A + ++  L K    V  +D  + +G + A ++
Sbjct: 282 IMPPKIATNQVDIITVFANKNPEVLQKAND-LFKTL-KNDFRVRINDSNKSVGFKAAQSE 339

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G P+++ +G + +  +KV +  R T  + D+ ++E+
Sbjct: 340 IEGTPIRIEIGPEDLKQNKVILIRRDTQEKIDVKIDEL 377



 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IY 106
           N N II+E         + +PTL    L   E      +  E++ +    DK +      
Sbjct: 55  NFNKIIKE----LNVKNLYLPTLIPESLINSEKDHVQGFAPELITVEKVGDKVLNEKLFL 110

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E +  + F++ + SY +LP    Q    FR E +     +R+ EFL ++ ++   +
Sbjct: 111 RPTSEVLFAEYFKTQLNSYNDLPLLLNQWANVFRWE-KTTSPFLRNSEFLWQEGHTSHYS 169

Query: 167 PEGSKHSYNKMFVSYLRIFHRL 188
            E +     KM   Y   F   
Sbjct: 170 EEEAHQFSKKMIQIYANFFEEF 191


>gi|260062022|ref|YP_003195102.1| prolyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88783584|gb|EAR14755.1| prolyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 491

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +G+  YV   S+G+ + R++ A+I +  D  G+
Sbjct: 233 GKALQAGTSHFLGQNFAKAFDVKFDNTEGQQEYVWATSWGV-STRLMGALIMTHSDDNGL 291

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I +  +Q+         + ARL   G  V +DD    + G +F  
Sbjct: 292 VLPPKLAPIQVVIVPIYRGQEQLEAISAVVNPLAARLRDRGISVKYDDRDTHKPGFKFNE 351

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++ VG + +++   E+  R T  ++ +  E +  Y
Sbjct: 352 YELKGVPVRLGVGPRDLANGTFEVARRDTLEKQVVPAEGIEEY 394



 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R ++ +I  PT E ++ D +R  I+SYR+LP    Q     R E+R R   +R+ EFL +
Sbjct: 113 RLEEELIVRPTSETIIWDTYRRWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQ 171

Query: 159 DAYS 162
           + ++
Sbjct: 172 EGHT 175


>gi|238916041|ref|YP_002929558.1| prolyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|259511595|sp|C4Z1D7|SYP_EUBE2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238871401|gb|ACR71111.1| prolyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 479

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   D K  YV   S+G    R++ AVI +  D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFGIQYTDKDNKLKYVHQTSWGT-TTRLIGAVIMTHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ +I I        D   ++   L   G  V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPKVAPVQVDVIPIMQKKAGVLDKAYEVGQALKAAGLRVKVDDSDKNPGWKFSEQEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P++V +G + +  ++  I  R T  +  +S++E+ +
Sbjct: 344 GIPVRVEMGPRDIEANQAVIVRRDTREKITVSIDELAD 381



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSY 89
           M +   KG   + P G    +N+   +      TG   + +P  +  + L VE    + +
Sbjct: 32  MSYSSVKGCMIFKPAGYAIWENIKNEMDRRFKETGVENVYLPMFIPESLLEVEKDHVEGF 91

Query: 90  GKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDEL 143
             E+  +     +   + M   PT E +  D ++  I+SYR+LP  + Q    +++  E 
Sbjct: 92  APEVAWVTYGGLNPLQERMCVRPTSETLFCDFYKDEIQSYRDLPKVYNQWCSVVRWEKET 151

Query: 144 RPRFGVMRSREFLMKDA 160
           RP    +RSREFL ++ 
Sbjct: 152 RP---FLRSREFLWQEG 165


>gi|85705178|ref|ZP_01036278.1| threonyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85670500|gb|EAQ25361.1| threonyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 648

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 16/198 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + R   + H  + + G   W P G      +   +R +Q
Sbjct: 234 KDYLTFLEE----AERRDHRKLGREMDLFHMQEEAPGQVFWHPNGWTVYTTLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG ++ Y + M  +       R        P +      
Sbjct: 290 RRGGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F    E    S  
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF--CTEDQIESET 407

Query: 176 KMFVSYLR-IFHRLGLKS 192
             F+++L  I+  LG  +
Sbjct: 408 ARFIAFLSGIYADLGFPN 425


>gi|317153730|ref|YP_004121778.1| threonyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943981|gb|ADU63032.1| threonyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 645

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 157/388 (40%), Gaps = 43/388 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  + G   +  P +   +LW +SG YD+Y +E +   
Sbjct: 261 GMILWHPKGGLIRTILEDFERKEHLKRGYQIVQGPLILKRELWEKSGHYDNY-RENMYFT 319

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++++    P +      IF+  I+SYR+LP  ++++ +  R E      G+MR R F 
Sbjct: 320 EIDEQSYGIKPMNCLSHMLIFKRKIQSYRDLPQRYFELGVVHRHEKSGVLHGLMRVRSFT 379

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+     P+  +     +F +++R    +GL      AE              ++  
Sbjct: 380 QDDAHLI-CRPDQLQTEIIGVF-NFVRDI--MGLFGFEFEAE--------------ISTR 421

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E  V    D+ +    +     D +    ++ E   A Y    D+    L DSL  ++R
Sbjct: 422 PEKSVGTDADW-ELATAALKDALDALGKPYTVNEGDGAFYGPKIDI---ILRDSL--DRR 475

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
                I+          ++LP      + G DG+ H  V +    +G++     V+    
Sbjct: 476 WQCATIQC--------DFTLPDRFDLVYVGEDGERHRPVMLHRVILGSIERFIGVLIEHF 527

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   +AP +  L+N+        +  EK  A L+  G  V  D   E++G +  
Sbjct: 528 AGALPVW---LAPVQARLLNVT---DAQGEFTEKARAYLAGRGIRVEADTRNEKLGYKVR 581

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            A +   P  ++VG K V    V I+ R
Sbjct: 582 EAQVEKIPYMLVVGDKEVEAGCVNIRSR 609


>gi|162447162|ref|YP_001620294.1| prolyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|161985269|gb|ABX80918.1| prolyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 474

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   YFG +++      F     +  Y    S+G+ + R++ A+I    D  G+
Sbjct: 225 GQALQSGTSHYFGNEFAHAFDIKFLNDKNELEYAYQTSWGV-STRLIGAIIMVHGDDNGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ ++ I+ +++V   A ++I   LS     VF DD  +  G +F+  ++ 
Sbjct: 284 VLPPYVAPTQVVIVPIRPNEEVL-SAVKQIENELSD-KFRVFVDDSDKSPGWKFSEHEMK 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL++ +G + + + +V +  R
Sbjct: 342 GVPLRIEIGPRDLENGQVVVTFR 364



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 16/173 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           M + +++G   + PLG    +N+   +  E  +TG   + +P L    L+  E      +
Sbjct: 32  MDYSNTQGFIIYRPLGYGIWENIQNYLNNEFRKTGHQNVYMPMLIPESLFQKEKDHVSGF 91

Query: 90  GKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDEL 143
             E   +     +   + +I  PT E +    +   +KSYR+LP  + Q    +++    
Sbjct: 92  APETAMVTTTGVENLSERLIIRPTSEVLFGTHYSKIVKSYRDLPKMYNQWCSVVRWEKTT 151

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LKSIP 194
           RP    +R +EFL ++ ++   T E +K   ++M    L ++ +LG  L +IP
Sbjct: 152 RP---FLRGKEFLWQEGHTVHATAEEAKKETHQM----LEVYDKLGKELLAIP 197


>gi|317497213|ref|ZP_07955537.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895458|gb|EFV17616.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 478

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   D K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFDIQYTDKDNKLQYVHQTSWGM-STRIIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +  ++ I    +   D  E+I  RL+     V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPRIAPVQTMIVPIMQKKEGVLDKAEEIRKRLAS-SYKVKVDDSDKSPGWKFSEQEVR 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P ++ +G K +  ++  I  R T  +  +SL+E+
Sbjct: 343 GIPTRIEIGPKDIEKNQAVIVRRDTREKIIVSLDEI 378


>gi|312795972|ref|YP_004028894.1| Threonyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167747|emb|CBW74750.1| Threonyl-tRNA synthetase (EC 6.1.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 643

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R      G +E+  P +    LW  SG + +Y +
Sbjct: 263 LQEEAPGLVFWHPKGWALWQQVEQYLRRRLGEAGYLEVKTPMIMDRSLWERSGHWQNYRE 322

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H      +F   + SYR+LP  F +     R+E      
Sbjct: 323 NMFTTESEKRDYAIKPMNCPGH----VQVFNHSLHSYRDLPLRFAEFGSCHRNEASGALH 378

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  DA+ F
Sbjct: 379 GLMRVRGFVQDDAHIF 394


>gi|28898054|ref|NP_797659.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362413|ref|ZP_05775365.1| threonine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260878403|ref|ZP_05890758.1| threonine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|31340445|sp|Q87Q70|SYT_VIBPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28806268|dbj|BAC59543.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308091059|gb|EFO40754.1| threonine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308115583|gb|EFO53123.1| threonine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 155/422 (36%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +R++ N     E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFVRDKLNEYDYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +             +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTESQIQEEVTSCIKMVYDTYQTFGFDNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + M+ P                I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQSLESMEIPY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  L+NI           ++I  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVLMNITDKQS---GYVQEIVQKLQKSGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|328472989|gb|EGF43837.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 155/422 (36%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +R++ N     E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFVRDKLNEYDYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +             +   G  +I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTESQIQEEVTSCIKMVYDTYQTFGFDNIVVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S + M+ P                I E   A Y    +     L
Sbjct: 433 ----EIWDQSEEALKQSLESMEIPY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G + +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  L+NI           ++I  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVLMNITDKQS---GYVQEIVQKLQKSGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|332708267|ref|ZP_08428248.1| threonyl-tRNA synthetase [Lyngbya majuscula 3L]
 gi|332352932|gb|EGJ32491.1| threonyl-tRNA synthetase [Lyngbya majuscula 3L]
          Length = 605

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 158/415 (38%), Gaps = 56/415 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG + +Y ++M  + 
Sbjct: 219 GLPLWTPKGTVLRTLLEDFLKQEQVKRGYLPVVTPHIGRVDLFKVSGHWQNYKEDMFPMM 278

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
                A   ++  +  P +      I++S ++SYR LP    +    +R E      G+ 
Sbjct: 279 AEDEEAAAAEQGFVLKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGELGGLT 338

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGG 204
           R R F + D++ F + P+     +  +    L +F  L +K+   R      A    IG 
Sbjct: 339 RVRGFTVDDSHLF-VMPDQLDQEFLSVVDLILSVFKSLQMKNFKARLSFRDPASDKYIGS 397

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D + E    A +   +   +     F  P E                  A Y    D   
Sbjct: 398 DQAWE---KAQSAIRRAVDTLGMESFEAPGE-----------------AAFYGPKLDFIF 437

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGA 321
           + + D          R  ++G +      Y+LP      +   DG +   + +     G+
Sbjct: 438 QDILD----------REWQLGTV---QVDYNLPERFDLEYVAEDGTRQRPIMIHRAPFGS 484

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +  +  ++   + G    W   +AP +  L+ +           +++ A++   G     
Sbjct: 485 LERLTGILIEQYGGDFPFW---LAPVQARLLPV---GDAQLPFAQEVAAKMRSHGIRAEV 538

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D  GE++G     A+    P+  +VG+K V  + + I+ R  G    M +++V+ 
Sbjct: 539 DTSGERLGKAIRNAEKAKIPVMSVVGAKEVEANSLNIRTRAAGELGMMPIDQVVE 593


>gi|289550561|ref|YP_003471465.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315658055|ref|ZP_07910928.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|289180093|gb|ADC87338.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315496945|gb|EFU85267.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 645

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 175/406 (43%), Gaps = 51/406 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      +   I +++   G   +  P L + DL+  SG +  Y  +M   +
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYRTSGHWAHYRDDMFPPM 321

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
           +L D N++ M+  P +      I+++   SYR LP    ++    R E      G+ R R
Sbjct: 322 KL-DENEE-MVLRPMNCPHHMMIYKNKPHSYRELPIRLAELGTMHRYEASGAVSGLQRVR 379

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              + D++ F + P+  K  + ++      ++   G +    R         LS+     
Sbjct: 380 GMTLNDSHIF-VRPDQIKDEFKRVVHMIQDVYKDFGFEDYTFR---------LSYR---- 425

Query: 214 ADTGETQVFCSKDFMDFPIPS---ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            D  + + +   D M     S   E  D   +  + +I E   A Y    DV   ++  +
Sbjct: 426 -DPEDKEKYMDDDDMWNKAESMLKEAVDELGLPYVEAIGE--AAFYGPKLDV---QVKTA 479

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAV 328
           + + + +S   ++    F    ++ L    T+ G+DG+ H   +   G+ +   R VA +
Sbjct: 480 MGKEETLSTAQLD----FLLPERFEL----TYIGSDGEYHRPVVIHRGVVSTMERFVAFL 531

Query: 329 IESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            E +   KG  +P  +AP ++ +I  N+  H    R+  +++ ++    G  V  DD  E
Sbjct: 532 TEET---KG-AFPTWLAPKQVEIIPVNVDLHYDYARNLQDELKSQ----GVRVEIDDRNE 583

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           ++G +   A +   P Q++VG K V +++V +  R  G ++  +LE
Sbjct: 584 KMGYKIREAQMQKIPYQIVVGDKEVENNQVNV--RQYGSQDQQTLE 627


>gi|163868456|ref|YP_001609665.1| threonyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|189083598|sp|A9IVB0|SYT_BART1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161018112|emb|CAK01670.1| Threonyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 658

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 171/450 (38%), Gaps = 51/450 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+   +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGMIFWHQKGWKMFQNLINYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M +    A+  D   IY   P +      
Sbjct: 289 DDHQYAEVNAPQVLDRSLWEISGHWGWYKENMFKAIPAAEDLDHEHIYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF--DLTPEGSKHS 173
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F  D        S
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIFCTDEQLAAECLS 408

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDF 230
            N + +S    +   G K I ++  + P   +G D       L D  E+        M+ 
Sbjct: 409 INDLILS---TYADFGFKEISLKLSTRPEKRVGSD------ALWDHAES-------IMES 452

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            + +  T F   I   SI+    A Y    +     L D++    +     ++      F
Sbjct: 453 VLKTIETKFAGQIK-TSILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQLDFNLPERF 508

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G  Y             K   V +     G+M     ++  +  G   +W   +AP +I 
Sbjct: 509 GAFY-------IDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLW---LAPEQIV 558

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  I +      +  +KI ARL  VG     D   E+I  +     L   P+ ++ G + 
Sbjct: 559 VATITSE---ANEYAQKITARLKAVGLSATTDLRNEKINYKIREHSLQKVPVILVCGKRE 615

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              + V ++   +  +  +S+E+ I   S+
Sbjct: 616 AETNSVNMRRLGSPNQTLLSVEDAIKQLSN 645


>gi|209879794|ref|XP_002141337.1| threonyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
 gi|209556943|gb|EEA06988.1| threonyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
          Length = 743

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 156/419 (37%), Gaps = 56/419 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G +  + +   IR E    G  E+  P + S DLW  SG Y +Y KE + 
Sbjct: 348 SVGSCFWLPPGARIYNKMIEFIRSEYRIRGFEEVVTPNIFSCDLWKTSGHYFAY-KENMF 406

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L +   K     P +      IFR    SY+ LP       +  R+EL     G+ R R 
Sbjct: 407 LFEVEKKEWGLKPMNCPGHCIIFRHMNPSYKQLPIRMADFGVLHRNELSGALNGLTRVRR 466

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  T E  +            ++ +LG  S  +   + P             
Sbjct: 467 FQQDDAHIF-CTAEQIQSEVFAALEFLFFVYDKLGF-SFNLYLGTMP------------- 511

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVHNEKLF 268
                     K+ +      E+ +    ++LN    QW       A Y    D+    L+
Sbjct: 512 ----------KEHLGTREKWEDAENSLKLALNRTGYQWKVNEGDGAFYGPKIDIM---LW 558

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---------GKDHYVQMGSYGI 319
           D+L    +     ++      F  +Y    +   +G D         G    V +    +
Sbjct: 559 DALKRPHQCGTIQLDFQLPIRFNLQYRSDDNILTEGGDHNLDEELKPGYKRPVIIHRAIL 618

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGC 377
           G++  + AVI  +  GK   W   ++P +  ++ I  K+HD       + I + L  +G 
Sbjct: 619 GSIERMVAVILENTGGKLPFW---LSPRQAIVLPISEKSHDYA-----KSIESELCCMGY 670

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-DMSLEEVI 435
           DV  D     I  +   A LL +   +IVG        + ++ R +   + +M L ++I
Sbjct: 671 DVGADYSSSTINRKIREAQLLQWNFMLIVGENEAKSGSITVRSRDSSTSQRNMILSDLI 729


>gi|73919802|sp|Q5ZS05|SYT_LEGPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 637

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 147/396 (37%), Gaps = 54/396 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 259 APGMVFWHPKGWTIYQELEHYMRNRLVDFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF- 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +  ++     P        I+   +KSYR+LP    +     R E      G+MR R 
Sbjct: 318 VTETENRHYAVKPMSCPCHVQIYNHGLKSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRN 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
            +  DA+ F  T +  +     M      ++   G   I  R    P   +G D      
Sbjct: 378 MVQDDAHIF-CTEDQIQSEVAMMLELVQSVYKDFGFTEIKYRLALRPEKRVGSD------ 430

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D  ET        +   +   N ++ D            AP       +  K+  SL
Sbjct: 431 DVWDKAETA-------LKLAMQGRNIEWVD------------AP--GEGAFYGPKIECSL 469

Query: 272 PENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVV 325
            +          +G I+  GT    +S+P  + A++   DG K   V +    +G+    
Sbjct: 470 SDC---------LGRIWQCGTIQVDFSMPARLEASYVAEDGSKQTPVMLHRAILGSFERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P +  ++ I        +  EK+   L K G    +D   
Sbjct: 521 MGILIEHYAGKLPLW---LSPVQAIVLTISEKQN---EYAEKVRKTLQKRGIRANFDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  ++VG K V + +V ++ R
Sbjct: 575 EKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTR 610


>gi|148548433|ref|YP_001268535.1| threonyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166225483|sp|A5W5E1|SYT_PSEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148512491|gb|ABQ79351.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           putida F1]
          Length = 640

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 3/187 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R  Q   G  E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENGYQEIKTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F+  DA+ F  T E  K          L ++   G   I M+  + P     S E 
Sbjct: 374 RVRGFVQDDAHIF-CTEEQVKKEAADFIKLTLDVYKDFGFSDIAMKLSTRPAKRVGSEEL 432

Query: 211 IVLADTG 217
              A+T 
Sbjct: 433 WDRAETA 439


>gi|167034477|ref|YP_001669708.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083619|sp|B0KKR8|SYT_PSEPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166860965|gb|ABY99372.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 640

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 3/187 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R  Q   G  E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENGYQEIKTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F+  DA+ F  T E  K          L ++   G   I M+  + P     S E 
Sbjct: 374 RVRGFVQDDAHIF-CTEEQVKKEAADFIKLTLDVYKDFGFSDIAMKLSTRPAKRVGSEEL 432

Query: 211 IVLADTG 217
              A+T 
Sbjct: 433 WDRAETA 439


>gi|238919782|ref|YP_002933297.1| threonyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259516479|sp|C5B846|SYT_EDWI9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238869351|gb|ACR69062.1| threonyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 152/415 (36%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  +      P    P E   +   I                     
Sbjct: 432 ----EIWDRAEEDLAAALQENGIPFEYQPGEGAFYGPKIEFT------------------ 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L D L        R  + G +      +SLP  +SA++ G + +     M    I G+
Sbjct: 470 --LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYVGENNERVVPVMIHRAILGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP +  ++NI        +  E++  +L   G  V  
Sbjct: 518 MERFIGILTEEFAG---FFPTWLAPVQAVVMNITDSQA---EYVEELSKKLQAAGIRVKS 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  ++ G K V   KV ++ R       MS+++VI 
Sbjct: 572 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGVMSIDDVIK 626


>gi|212635267|ref|YP_002311792.1| threonyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|226701407|sp|B8CME8|SYT_SHEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212556751|gb|ACJ29205.1| Threonyl-tRNA synthetase, class IIa [Shewanella piezotolerans WP3]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 143/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++  +    E+  P +    LW  SG +D Y  
Sbjct: 256 MQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTYQEVKGPLMMDRVLWERSGHWDKYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      + +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 GMFTTNSESREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   +         +   G K+I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHVF-CTEEQVQQEVSACIQMVYDTYETFGFKNIVVKLSTRPEKRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   S D     +P E   +   I                       L
Sbjct: 432 -DMWDRAEEALKQALKSNDIEFEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPGRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   W   +AP ++ ++NI        D  E++     + G     D  
Sbjct: 521 FLGILIEEYAGKFPTW---LAPQQVVVMNITDKQS---DYAEEVVNLFKEHGIRATKDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|221194423|ref|ZP_03567480.1| threonyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185327|gb|EEE17717.1| threonyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 588

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 156/393 (39%), Gaps = 60/393 (15%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRN 100
           WLP G    + +     E   +    E+  P + S  LW  SG +D Y + M   + D  
Sbjct: 218 WLPNGMAVRNALTDYWHEMMVKFNYEEVLTPQILSRSLWETSGHWDHYKENMYTTSVDEE 277

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKD 159
           D A+   P +      I+++  +SYR+LP    +  L  R E++    G+ R REF   D
Sbjct: 278 DFAI--KPMNCPGACLIYKNRPRSYRDLPLKLAEAGLDHRYEMKGALHGLFRVREFTQDD 335

Query: 160 AYSF----DLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFIV 212
           A+ F     +T + +  S+  +  +Y   F   +R+ L + P       +G D   E   
Sbjct: 336 AHIFIRPDQITEQVADASH--LITAYYAQFGFPYRVELSTRP----ENSMGSDEDWE--- 386

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+ G       KD +      E+   D +++     E   A Y    D H   L D L 
Sbjct: 387 RAEQG------LKDAL------ESMGIDYVLN-----EGDGAFYGPKIDFH---LTDCL- 425

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG---KDHYVQMGSYGIGAMRVVAAVI 329
                  R  + G I      + LP +   +  D    K   + +   G G+      ++
Sbjct: 426 ------GRSWQCGTI---QLDFQLPHNFELEYVDSDGTKKQPIMIHRAGFGSFDRFIGIL 476

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              ++GK  +W   +AP ++ ++ +    +  R+   ++   L   G  V  D+  E+IG
Sbjct: 477 TEHYEGKFPVW---LAPCQVKVLPVS---EKSREYAHEVAGALQAAGIRVKVDNRDEKIG 530

Query: 390 SQFAVADLLG-FPLQVIVGSKFVSDSKVEIKHR 421
            +   A  L   P  +I+G K V    + ++ R
Sbjct: 531 YKIREARSLDRVPYMLIIGEKEVEAHNISVRDR 563


>gi|52842920|ref|YP_096719.1| threonyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52630031|gb|AAU28772.1| threonyl tRNA synthase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 646

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 147/396 (37%), Gaps = 54/396 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R      G  E+  P L    LW +SG + ++  EM  
Sbjct: 268 APGMVFWHPKGWTIYQELEHYMRNRLVDFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF- 326

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +  ++     P        I+   +KSYR+LP    +     R E      G+MR R 
Sbjct: 327 VTETENRHYAVKPMSCPCHVQIYNHGLKSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRN 386

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
            +  DA+ F  T +  +     M      ++   G   I  R    P   +G D      
Sbjct: 387 MVQDDAHIF-CTEDQIQSEVAMMLELVQSVYKDFGFTEIKYRLALRPEKRVGSD------ 439

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D  ET        +   +   N ++ D            AP       +  K+  SL
Sbjct: 440 DVWDKAETA-------LKLAMQGRNIEWVD------------AP--GEGAFYGPKIECSL 478

Query: 272 PENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVV 325
            +          +G I+  GT    +S+P  + A++   DG K   V +    +G+    
Sbjct: 479 SDC---------LGRIWQCGTIQVDFSMPARLEASYVAEDGSKQTPVMLHRAILGSFERF 529

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + GK  +W   ++P +  ++ I        +  EK+   L K G    +D   
Sbjct: 530 MGILIEHYAGKLPLW---LSPVQAIVLTISEKQN---EYAEKVRKTLQKRGIRANFDLRN 583

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  ++VG K V + +V ++ R
Sbjct: 584 EKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTR 619


>gi|301089746|ref|XP_002895146.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262101719|gb|EEY59771.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 744

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 159/409 (38%), Gaps = 42/409 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   WLP G      +   IRE+    G  E+  P + + +LW  SG    Y KE
Sbjct: 360 HSLSPGSGFWLPHGSAIYFKLLKFIREQYRARGYTEIITPNIYNMELWNISGHAQHY-KE 418

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            + + D   +     P +    + +F    +SYR LP       +  R+EL     G+ R
Sbjct: 419 NMFVFDVEGQEYALKPMNCPAASLMFDFRQRSYRELPIRLADCGVLHRNELSGALTGLTR 478

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLK-SIPMRAESGPIGGDLSHE 209
            R F   DA+ F    +  K   +  F+++++ ++   G++ ++ +        G+L   
Sbjct: 479 VRRFQQDDAHIFCRDDQIKKEVLD--FLTFMKYVYDVFGIEFNLELSTRPEKAMGELEQ- 535

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNEKL 267
                +  ETQ+  +               D+ +     V      A Y    D+    +
Sbjct: 536 ----WERAETQLAQA--------------LDEFVGAGKWVVNPGDGAFYGPKIDIM---I 574

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D+L    + +   ++      F  KY    +  FK    +   +    YG    R VA 
Sbjct: 575 TDALKRQHQCATVQLDFQLPIRFNLKYRTDDAENFK----RPVIIHRAIYG-SLERFVAV 629

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E  + GK   W   ++P +I ++ + A      D   ++   L + G DV  DD G+ 
Sbjct: 630 LVE-HYAGKFPFW---LSPRQILIVTVGA---AFVDYGYEVKDALFRAGFDVEIDDSGKT 682

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +  +     +  +   ++VG+       V I+ R   +R   +LEE I+
Sbjct: 683 LNKKIREGQMAHYNFILVVGAHEKETRSVNIRTRDNKVRGTKTLEEAIS 731


>gi|149926877|ref|ZP_01915136.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824429|gb|EDM83647.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 635

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      V   +R+     G  E+  P +    LW +SG +D+Y +
Sbjct: 255 MQDEAPGLVFWHPKGWALWQQVEQYMRKVYVDGGYQEIRCPQILDRKLWEKSGHWDNYKE 314

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M    +++ D A+  +  P H EV    F+S ++SYR+LP  + +     R+E      
Sbjct: 315 NMFTTESEKRDYALKPMNCPGHIEV----FKSDLRSYRDLPMRYGEFGACHRNESSGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           G+MR R F   D + F  T +  +    K     ++++   G   I ++    P
Sbjct: 371 GIMRVRGFTQDDGHIF-CTEDQVQEEVTKFNQVAMQVYADFGFNEINVKLALRP 423


>gi|65319684|ref|ZP_00392643.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
          Length = 485

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 100 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 159

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 160 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 218

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 219 LNGLLRVRTFCQDDAHLF-VTPE 240


>gi|34763461|ref|ZP_00144407.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237741623|ref|ZP_04572104.1| threonyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|294785766|ref|ZP_06751054.1| threonine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|27886876|gb|EAA24002.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229429271|gb|EEO39483.1| threonyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|294487480|gb|EFG34842.1| threonine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 637

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/447 (20%), Positives = 181/447 (40%), Gaps = 56/447 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R K  L +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R+
Sbjct: 226 RLKKHLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIIRNVLIDLWRK 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G +++  P + + +LW  SG + +Y +E +  ++ ++      P +       F+
Sbjct: 282 EHEKAGYLQLETPIMLNKELWEISGHWFNY-RENMYTSEIDELEFAIKPMNCPGGVLSFK 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +       
Sbjct: 341 HQLHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEI---- 395

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    +G+ ++  +  S   G     E+ +   T   +   S++  D    +    
Sbjct: 396 ---------IGVVNLIDKFYSKLFG----FEYEIELSTKPEKAIGSQEIWDMAEAALAGA 442

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
            D +     I     A Y    D    K+ D+             +G ++  GT    ++
Sbjct: 443 LDKLGRKYKINPGDGAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFN 486

Query: 296 LP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP     T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++
Sbjct: 487 LPERFDVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVL 543

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFV 411
            +   +  C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V
Sbjct: 544 TL---NDECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEV 600

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYA 438
            +  V I+   +  +    L+E  NY 
Sbjct: 601 ENKGVNIRRFGSKDQFTKPLDEFYNYV 627


>gi|319407312|emb|CBI80953.1| Threonyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 654

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 21/215 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  + S G+  W P G K   N+ + +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEESPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAM-IYGPTHEEVMTD 116
           +     E+  P +    LW  SG +  Y + M +      D ND+      P +      
Sbjct: 289 DNHKYAEVQAPQVLDKSLWEISGHWGWYKENMFKTIPAADDWNDECTYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH--S 173
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    S
Sbjct: 349 IFKHGLKSYRDLPVRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIFCTEEQLADECLS 408

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            N + +S    +   G K I ++  + P   +G D
Sbjct: 409 INDLILS---TYADFGFKEISLKLSTRPEKRVGSD 440


>gi|298245368|ref|ZP_06969174.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297552849|gb|EFH86714.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 483

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 7/149 (4%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++      F  ADG+  Y    S+G+ + R++  +I    D  G+I P  +APF++
Sbjct: 236 LGQNFAKSFDIQFLDADGERKYCATTSWGL-STRMIGGIIMVHGDPSGLILPPRLAPFQV 294

Query: 350 SLINIKAHDQ---VCRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
            ++ I   DQ   V  +A E++   L  KV   V  DD     G ++   ++ G PL++ 
Sbjct: 295 VIVPIWRKDQDRAVVFEAVERLQKMLKGKVRVKV--DDSDNTPGWKYNEWEMRGVPLRLE 352

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G + V ++ V +  RL   +E +S++ +
Sbjct: 353 IGPRDVQNNNVVLVSRLDRSKEFVSIDNL 381


>gi|146293114|ref|YP_001183538.1| threonyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166225500|sp|A4Y706|SYT_SHEPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145564804|gb|ABP75739.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella
           putrefaciens CN-32]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTDDQVQEEVSACIQMVYDTYSTFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   + +     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRANNIEFTLLPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPSRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  ++I     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVQEIVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|322369853|ref|ZP_08044415.1| prolyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320550189|gb|EFW91841.1| prolyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 485

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 123/330 (37%), Gaps = 63/330 (19%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D  D+ + + PT E ++T      ++S+R+LP    Q     R E        R++EFL 
Sbjct: 104 DELDERLAFRPTSESIITPFMSQWVRSHRDLPLRLNQWCSVIRWEATDTKPFFRTKEFLW 163

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           ++ ++   T E +          Y R+F    + +IP+     P      H+    ADT 
Sbjct: 164 QEGHTAHETEEEAWDETMTRLEQYQRVFEE--VLAIPVMPGRKP-----EHDKFPGADTT 216

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T                      + +L                         +P+ K V
Sbjct: 217 TT----------------------VEAL-------------------------MPDGKSV 229

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                      Y G  ++      F   +  +      S+G+ + R + A+I +  D +G
Sbjct: 230 QG-----ATSHYLGQGFAEAYDLYFTDENEDERVAHTTSWGL-SWRALGALIMTHSDEQG 283

Query: 338 IIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
            + P ++AP ++ ++ I  + + +      E I   L + G  V  DD  E+  G +F  
Sbjct: 284 FVCPPTLAPEQVVIVPIWQEENREEVLSYAEGIAEDLEEAGVRVELDDRDERNPGFKFNE 343

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +L G P++  +G   V D ++ + HR  G
Sbjct: 344 WELKGVPVRFEIGPHEVEDDEITVVHRPDG 373


>gi|150389418|ref|YP_001319467.1| threonyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149949280|gb|ABR47808.1| threonyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 636

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/402 (20%), Positives = 150/402 (37%), Gaps = 53/402 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +++   G   + P G    + +    R E  + G  E+  P + +  LW +SG +D Y +
Sbjct: 257 LNEEGPGFPFFHPNGMIVRNELENFWRREHTKRGYEEIKTPIILNEQLWKQSGHWDHY-Q 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   + +D      P +      +++  + SYR+LP    ++ L  R EL     G+M
Sbjct: 316 ENMYFTNIDDANYAVKPMNCPGSILMYKRKMHSYRDLPIRMGELGLVHRHELSGALHGLM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM-FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           R R F   DA+ F L  +        M FV Y   +   G K                  
Sbjct: 376 RVRCFTQDDAHIFMLPEQIKDEILGVMNFVDYF--YKVFGFK------------------ 415

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           + +   T       + +  D  I S     ++      + E   A Y    D H E    
Sbjct: 416 YHIELSTRPKDSMGTDEEWDLAINSLREALEENNVKYKLNEGDGAFYGPKIDFHLEDA-- 473

Query: 270 SLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMR 323
                         +G  +  GT    + +P      + GADG+ H  + +     G++ 
Sbjct: 474 --------------IGRTWQCGTIQLDFQMPQRFDINYVGADGEKHRPIMIHRVIFGSIE 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWD 382
               ++   + GK   +P  +AP +  ++ I   H +  R    K+  ++ +    V  D
Sbjct: 520 RFIGILIEHYAGK---FPAWLAPVQAKILPITDNHLEYAR----KLQQQMLEKDIRVVID 572

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +  E+IG +   A L   P  +++G K V    V ++ R  G
Sbjct: 573 ERSEKIGFKIREARLERVPYMLVIGDKEVESETVAVRAREEG 614


>gi|120598808|ref|YP_963382.1| threonyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|166225502|sp|A1RJI3|SYT_SHESW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120558901|gb|ABM24828.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella sp.
           W3-18-1]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTDDQVQEEVSACIQMVYDTYSTFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   + +     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRANNIEFTLLPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPNRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  ++I     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVQEIVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|330819285|ref|YP_004348147.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327371280|gb|AEA62635.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 682

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 2/170 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G   W P G      + A +R  Q     +E++ P +    LW  SG + +Y   
Sbjct: 275 QEDAPGAVFWHPRGWTVFRELIAYMRRRQEEAAYVEVNSPDVMDRSLWEISGHWLNYRDH 334

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M   A  + +++   P +      ++R  +KSYR+LP    +     R E      G++R
Sbjct: 335 MFTTATEDGRSLALKPMNCPGSVLLYRHGLKSYRDLPIRMGEFGKVHRYEPSGALHGLLR 394

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            R F   DA+ +  TP         +    L I+ + G + + ++  + P
Sbjct: 395 VRHFTQDDAHIY-CTPAQMDQECRAVVALVLDIYRQFGFEEVRIKLSTRP 443


>gi|318605898|emb|CBY27396.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 147/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                D    +E+ D    ++ N I   +     A      E  
Sbjct: 432 ---------------------DLWTRAED-DLAAALTENGIPFDYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  +SA++ G +       M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D 
Sbjct: 520 RFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|188586439|ref|YP_001917984.1| Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229558041|sp|B2A5P2|SYT_NATTJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|179351126|gb|ACB85396.1| Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 636

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 153/393 (38%), Gaps = 50/393 (12%)

Query: 53  VNAII---REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +N +I   R E  + G  E+S P + +  LW  SG +D + +E +   + +D+     P 
Sbjct: 275 INELIDFWRREHRKAGYQEISTPIILNRGLWERSGHWDHF-QENMYFTEIDDEDFAVKPM 333

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           +      ++ +++ SYR+ P    ++    R EL     G++R+R F   DA+ F + P 
Sbjct: 334 NCPGAMLVYNNNMYSYRDFPLRVAELGKVHRHELSGALHGLLRARSFTQDDAHIF-MLPS 392

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +     +     R +   G                    + V   T   +   S +  
Sbjct: 393 QVEEELENVINLVDRFYSVFGFN------------------YYVELSTKPEKAMGSDEIW 434

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNEKLFDSLPENKRVSARGIEVG 285
           D  I           +L S++E+    Y         +  K+   L +    S +   + 
Sbjct: 435 DRAIN----------ALKSVLEKRGIKYIVNEGDGAFYGPKIDFQLEDAIGRSWQCSTIQ 484

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
             F    ++ L    T+ G DG+ H  V +     GA+    A++   ++GK  +W   +
Sbjct: 485 LDFLLPERFDL----TYIGEDGQKHRPVMIHRVIYGAIERFFALLIEHYEGKFPLW---L 537

Query: 345 APFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           AP +  +I I   H +  +D    I  +L   G     D   E+IG +   A L   P  
Sbjct: 538 APRQAVIIPIADRHMEYGKD----ITKQLESEGIRADLDQRNEKIGYKIRDAQLKKVPYM 593

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +IVG   V +  V ++ R  G     S+ E+++
Sbjct: 594 LIVGDDEVENKTVSVRTREDGDIGSKSVAELVD 626


>gi|123442189|ref|YP_001006170.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225517|sp|A1JMJ9|SYT_YERE8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122089150|emb|CAL11992.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 147/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                D    +E+ D    ++ N I   +     A      E  
Sbjct: 432 ---------------------DLWTRAED-DLAAALTENGIPFDYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  +SA++ G +       M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D 
Sbjct: 520 RFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|75908999|ref|YP_323295.1| threonyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|75702724|gb|ABA22400.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Anabaena
           variabilis ATCC 29413]
          Length = 615

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 8/171 (4%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            Q   G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++
Sbjct: 224 EQVGPGLPLWTPKGTLLRSTLEQFLQQEQLKRGYLPVVTPHIARVDLFKTSGHWQKYKED 283

Query: 93  MLRL------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           M  L      A   ++  +  P +      I++S ++SYR LP    +    +R E    
Sbjct: 284 MFPLMAEDEAAAAIEQGFVLKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGE 343

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             G+ R R F + D++ F +TPE     +  +    L +F  L LK+   R
Sbjct: 344 LGGLTRVRGFTVDDSHLF-VTPEQLDSEFLNVVDLILSVFKSLQLKNFKAR 393


>gi|291087823|ref|ZP_06572117.1| proline--tRNA ligase [Clostridium sp. M62/1]
 gi|291073860|gb|EFE11224.1| proline--tRNA ligase [Clostridium sp. M62/1]
          Length = 493

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      F   D K  YV   S+G+   R++ A+I    D  G+
Sbjct: 241 GKALQSGTSHNFGDGFAKAFGIQFSDKDNKLKYVHQTSWGM-TTRLIGAIIMVHGDDSGL 299

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ I+   +   D   ++   LS  G  V  DD  +  G +F+ +++ 
Sbjct: 300 VLPPRIAPTQVVIVPIRQQAEGVLDKAYELKDILS--GFSVKVDDSDKSPGWKFSESEMR 357

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K +  ++  +  R T  +  +SL+E+
Sbjct: 358 GIPVRVEIGPKDLEQNQAVLVRRDTHEKITVSLDEI 393


>gi|13541912|ref|NP_111600.1| prolyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|74581167|sp|Q979Q5|SYP_THEVO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14325343|dbj|BAB60247.1| tRNA synthetase Pro [Thermoplasma volcanium GSS1]
          Length = 462

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S R +++G I  +GT +S      +   DG   YV   ++G+ + R++AA+I    D KG
Sbjct: 215 SGRSLQIGTIHQYGTNFSKNYDIKYLKEDGTFEYVHQTTFGM-SERLLAAIIGIHGDDKG 273

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           +I P ++AP ++ ++ I   + V R A + I   L+ +G     D+      G ++   +
Sbjct: 274 LILPPAIAPIQVVIVPIPG-EGVERYA-KDIETTLNGIGIRCHVDNRDNYTPGYKYNDWE 331

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           + G PL++ VG + + +  V +  R
Sbjct: 332 MRGVPLRIEVGERELKEKTVTLAAR 356



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 27/170 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL----------------W 80
           KG+  W P G K +  ++ IIR   ++    E++ P L S  +                W
Sbjct: 29  KGMNVWRPYGWKIMKLIDNIIRNAVDKHSFDEVNFPVLISRGMLEVEFEHIRGFENEIYW 88

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V  G     GKE L      ++ +   PT E  M  +F   ++S+ +LP   YQI   +R
Sbjct: 89  VTKG-----GKEKL------EEELALRPTSESAMYPMFSLWVRSHADLPLKIYQIVSVYR 137

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            E +     +R RE    +A++   + E ++   ++  + +  I   L L
Sbjct: 138 YETKHTRSFIRIREIHFFEAHTAHESYEDAEKQMDEYRIIWTEIADALCL 187


>gi|300814791|ref|ZP_07095034.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511099|gb|EFK38356.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 636

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/420 (20%), Positives = 162/420 (38%), Gaps = 54/420 (12%)

Query: 13  ENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   +AE   H+ +   L    +H+   G   + P G    +N+ +  +      G  E+
Sbjct: 232 EKREEAEKRDHRKLGRELDLFSMHEEGPGFPFFHPNGMIIRNNLLSWWKNVLQERGYGEI 291

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + + DLW  SG +D Y KE +   + +++     P +    T I+ +   SYR+LP
Sbjct: 292 LTPVILNEDLWHRSGHWDHY-KENMYFTEIDEEGYAVKPMNCPGSTLIYSTTPHSYRDLP 350

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             + +  L  R EL     G+ R R F   DA+ + L  +     +  + ++ L ++   
Sbjct: 351 LRYAEFGLVHRHELSGALHGLFRVRSFTQDDAHIYCLPNQIKSEVFEIIDLANL-LYDTF 409

Query: 189 GLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           G K S+ +        GDL           E +    +   +  +P             +
Sbjct: 410 GFKYSVELSTRPDDYMGDLE-------SWNEAEKALKEALEEKGMPY------------T 450

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLPMS--ATF 302
           I E   A Y    D H E                  +G  +  GT    + LP +   T+
Sbjct: 451 INEGDGAFYGPKIDYHLEDA----------------IGRTWQCGTIQLDFQLPQNFELTY 494

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG K   V +     G++     ++     GK  +W   ++P ++ +I +    +  
Sbjct: 495 VAEDGSKKRPVMLHRALFGSVERFMGILIEHFAGKFPLW---LSPVQVEIIPV---SEKF 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +    +++ +L K G  V  D+  E++G +   A L      +++G K  +  K+ ++ R
Sbjct: 549 KPYAGEVFDQLKKAGIRVKIDERAEKVGYKIREAQLKKVNYMLVIGEKETASHKLSVRKR 608


>gi|323143349|ref|ZP_08078037.1| threonine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416867|gb|EFY07513.1| threonine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 644

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 159/428 (37%), Gaps = 52/428 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  +   KL L      Q + G+  W   G      +   +RE  ++   IE+  P + 
Sbjct: 242 RDHRVLGKKLDL--FHFQQEAPGMVFWHNDGWTIYRVIENFMREMLHKYHYIEVKTPQIM 299

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
              LW  SG +D Y + M   +  N    I  P +      IF S  +SYR+LP    + 
Sbjct: 300 DRVLWERSGHWDKYAENMFTTSSENRDYAI-KPMNCPGAIQIFNSRTRSYRDLPIRMAEF 358

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R+E      G++R R F   DA+ F  T +      +         +   G   + 
Sbjct: 359 GNCHRNEPSGSLHGLLRVRAFEQDDAHIF-CTEDQIMTEVSDCIRMVYDTYSNFGFTKVD 417

Query: 195 MRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           ++  + P   IG D       + D  E                   D  + + LN++  +
Sbjct: 418 VKLSTRPEKRIGSD------EIWDKAE------------------ADLVEALKLNNLEYE 453

Query: 252 WTAPYAATSDVHNE-KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGK 308
                 A      E  L DSL        R  + G +      +SLP  + A + G D +
Sbjct: 454 LQPGEGAFYGPKIEFTLHDSLD-------RAWQCGTV---QLDFSLPARLDAHYIGEDNQ 503

Query: 309 DHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G++     V+     G    W   +AP +  ++NI    QV  D  ++
Sbjct: 504 EHTPVMIHRAMLGSIERFLGVLTEEFAGSFPTW---LAPIQAVVMNI-TDGQV--DYVKQ 557

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L + G  V  D   +++G +     L+  P  ++ G +      V ++ R      
Sbjct: 558 VAQKLDEAGIRVKSDLRNDKVGFKIREHTLMHVPYMLVCGDREAESGMVAVRTRKGQDLG 617

Query: 428 DMSLEEVI 435
            M L+++I
Sbjct: 618 AMKLDDLI 625


>gi|320590732|gb|EFX03175.1| threonyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 752

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 173/434 (39%), Gaps = 47/434 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G +  + +   I  E ++   +E+  P + +ADLW  SG ++ Y +
Sbjct: 314 FHKLSPGSPFFLPHGMRIFNALKEFILSEYHKRDYVEVMSPNMFNADLWRTSGHWEHYQE 373

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M  L +   +     P +      IF S  +SYR LP    +  +  R+E      G+ 
Sbjct: 374 DMFTL-EVEKQQWALKPMNCPGHCVIFGSRERSYRELPLRMAEFGILHRNEASGALSGLT 432

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLK---SIPMRAES------- 199
           R R F+  D++ F    E    S  +    +LR ++ +LG+K    +  R E        
Sbjct: 433 RVRRFIQDDSHIF--CEEDQIGSEIRDLFDFLRTVYGKLGMKFRLKLSTRPEKYLGNLET 490

Query: 200 -GPIGGDLSH---EFIVLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLN--- 246
                  L H   EF   +      + G+   +  K  +D  I      +    +L    
Sbjct: 491 WDKAEATLQHALEEFTKESGAEWSLNPGDGAFYGPK--IDIQIMDALRRWHQCATLQLDF 548

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            + +Q+   Y   +  ++    D   E K V  + +E           ++  SA    A 
Sbjct: 549 QLPQQFNLSYMTAASSNS----DGKAEAKTVETKPVEAETKDGKDDSKAVTASAAQTLAP 604

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           G    V +    +G+     A +     GK   WP  ++P +I L+ + A  +   R+  
Sbjct: 605 GYSRPVMIHRAVLGSFERFIATLSEHFAGK---WPFWLSPRQILLVPVMADAEDYVREVQ 661

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR---- 421
           + + AR   V  D+  + M ++I +      +L +    ++GSK + D  V I+ R    
Sbjct: 662 KVLKARGFYVDSDLGANTMNKKIRN----GQVLQYNFIFVLGSKEMQDRSVSIRVRDSKG 717

Query: 422 -LTGIREDMSLEEV 434
            LT +  D+ +E +
Sbjct: 718 DLTTLSLDVVVERL 731


>gi|291614198|ref|YP_003524355.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584310|gb|ADE11968.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 637

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 161/414 (38%), Gaps = 56/414 (13%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H KG   W  + Q     + A+ R+     G  E+  P +    LW +SG ++ Y
Sbjct: 261 GMVFWHPKGWAMWQVIEQ----YMRAVYRD----NGYHEIRCPQIIDRVLWEKSGHWEHY 312

Query: 90  GKEMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
              M    ++++D A+  +  P H +V    F + ++SYR LP  + +     R+E    
Sbjct: 313 KANMFTTESEKHDYAIKPMNCPGHVQV----FNADLRSYRELPLRYGEFGSCHRNEPSGG 368

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+MR R F+  D + F  T E  +          L+++   G   + ++    P G  
Sbjct: 369 LHGLMRVRGFVQDDGHIF-CTEEQIESEVKAFNTLVLKVYKDFGFHDVVVKLALRPEGRV 427

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S E   + D  E  +  +       + +   D++++    +        Y    + H  
Sbjct: 428 GSDE---IWDKSENALRAA-------LRASGMDWEELPGEGAF-------YGPKIEFH-- 468

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAM 322
                    K    R  + G I      +S+P  + A F   D       M    I G++
Sbjct: 469 --------IKDAIGRSWQCGTI---QVDFSMPGRLGAEFVDEDNTRKVPVMLHRAILGSL 517

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  +H G   +W   +AP ++ ++NI    Q   +   K+   L   G  V  D
Sbjct: 518 ERFIGILVENHAGALPLW---LAPVQMVVMNIS---QAQEEYAGKVAQTLRASGFRVQSD 571

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              E+I  +     L   P Q+I+G K V+   V ++ R       MS++ +I 
Sbjct: 572 LRNEKITYKIREHSLQKLPYQLIIGDKEVAAGLVAVRSRTGEDLGQMSVDALIQ 625


>gi|229096864|ref|ZP_04227833.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228686474|gb|EEL40383.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 639

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|206974097|ref|ZP_03235015.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217959885|ref|YP_002338441.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229139078|ref|ZP_04267655.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|206748253|gb|EDZ59642.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217066290|gb|ACJ80540.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228644433|gb|EEL00688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 639

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|229196601|ref|ZP_04323345.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228586957|gb|EEK45031.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
          Length = 639

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|78184510|ref|YP_376945.1| threonyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123757112|sp|Q3AYC6|SYT_SYNS9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78168804|gb|ABB25901.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           sp. CC9902]
          Length = 611

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/415 (20%), Positives = 153/415 (36%), Gaps = 39/415 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEDFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYAESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 QVDEREYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ F L P+       ++     RI          +   + P     S     LA 
Sbjct: 348 TQDDAHVFCL-PDQISDEILRILDLTERILSTFDFNHYEINLSTRPEKSIGSEAVWELAT 406

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G T+    K + +F I      F                Y    D+   K+ D++    
Sbjct: 407 KGLTEALERKGW-NFKIDEGGGAF----------------YGPKIDL---KIEDAIGRMW 446

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHD 334
           + S   ++      FG  Y          ADG K   + +     G++     ++  ++ 
Sbjct: 447 QCSTIQLDFNLPERFGLDYV--------AADGSKQQPIMIHRAIFGSLERFFGIMTENYA 498

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G    W   +AP +I L+ +   D V +   E++  +L   G     D  G+++G     
Sbjct: 499 GDFPFW---LAPEQIRLLPVT--DDV-QPYAEQVLNQLKTAGIRATIDQSGDRLGKIIRT 552

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + +  P+  ++G+K    + + ++ R  G     S++ ++  A    +  +P L
Sbjct: 553 GEQMKIPVLAVIGAKEAEQNAISLRSRRDGDLGVTSVDALLKAAQRANAERQPGL 607


>gi|255994452|ref|ZP_05427587.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993165|gb|EEU03254.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 581

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 153/403 (37%), Gaps = 51/403 (12%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           +LP G      +    R+E  + G  E+  P + S +LW  SG YD Y KE +     +D
Sbjct: 211 FLPNGMILRTELENYWRQEHRKRGYDEIKTPLILSEELWHTSGHYDHY-KENMYFTSIDD 269

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
                 P +       ++  + SYR+ P    ++    R EL     G+MR R F   DA
Sbjct: 270 AEYAIKPMNCPGAMLTYKRKLYSYRDFPIRLAELGQVHRHELHGALHGLMRVRTFTQDDA 329

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTG 217
           + F +TP+  K    ++      +++  G K    +  R E   +G D      +     
Sbjct: 330 HIF-MTPDIVKDEIKRVVSFIDDVYNLFGFKYHIELSTRPEDS-MGTDEEWNHAI----- 382

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                   D ++  I     D+        I E   A Y    D H E   DSL      
Sbjct: 383 --------DSLEAAIKEMGKDY-------VINEGDGAFYGPKLDFHLE---DSL------ 418

Query: 278 SARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
             R  + G I   F    K+ L    T+ G+DG+ H  + +     G++     ++    
Sbjct: 419 -GRTWQCGTIQLDFQMPQKFDL----TYVGSDGEKHRPIIIHRVIFGSIERFIGILIEHF 473

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            GK  +W   +AP ++ L+ +    +      EK+   L+K G  V  D   E+IG +  
Sbjct: 474 AGKFPLW---LAPEQVRLLTVT---EKFVPYAEKVSKELAKHGIRVKVDARNEKIGYKLR 527

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                      ++G +      + ++    G    +S+++ I+
Sbjct: 528 QGRNERVSYLAVIGEREAEADTLSVRSSKEGDLGSLSIDKFID 570


>gi|240103108|ref|YP_002959417.1| prolyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|239910662|gb|ACS33553.1| Prolyl-tRNA synthetase (proS) [Thermococcus gammatolerans EJ3]
          Length = 483

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 23  HKLMLRTGMIHQH--SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADL 79
           ++L+   G+I +    KG+  WLP G K + N+   I  E  RTG  E+  P L    + 
Sbjct: 18  NELLETAGIIDKRYPVKGMNVWLPYGLKIMRNIEKFIHSEMARTGHEEVLFPALIPETEF 77

Query: 80  WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     +  E+  +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI
Sbjct: 78  QKEAEHIKGFEDEVYWVTHAGLDPLDVRLILRPTSETAMYSMFSLWIRSHADLPFKVYQI 137

Query: 136 QLKFRDELRPRFGVMRSRE 154
              +R E +    ++R RE
Sbjct: 138 VNVYRYETKHTRPLIRVRE 156



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   ++   +  ++   G   YV   ++G+   R++AAVI    D  G+
Sbjct: 222 GRTLQIGTMHNYKQNFAKAYNIQYETETGDHEYVHQTTFGMSE-RLLAAVIAVHGDDSGM 280

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P ++AP ++ ++ I   D          +I   L K G  V  D+   + G ++   +
Sbjct: 281 VLPPTIAPIQVVIVPIPKKDANVDVFAYAREIAEELGKAGFRVHVDERDIRPGRKYYDWE 340

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEV 434
           L G PL++ VG + V   K  +  R T     +  D  +EEV
Sbjct: 341 LKGVPLRIEVGPRDVEGRKAVLARRDTFEKVTVERDAIVEEV 382


>gi|309805191|ref|ZP_07699243.1| threonine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165425|gb|EFO67656.1| threonine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 461

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 162/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 77  GLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 136

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 137 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 196

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 197 TLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDITDYYFR---------LSYR-----D 241

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M +          DD+       E   A Y    D+  +    +L  +
Sbjct: 242 PKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKT---ALGND 298

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 299 ETMSTIQLD----FMLPERFNL----SYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIY 350

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N  AH +  ++  ++    L K+G     D   E++G +
Sbjct: 351 KGAFPTW---LAPLQVKIIPVNNDAHGEYAQNVKDQ----LMKLGFRAEVDFRNEKLGYK 403

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              A     P  +++G   +  + V ++   +  +E  +L E ++  S
Sbjct: 404 IREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKALSEFVSELS 451


>gi|238749482|ref|ZP_04610987.1| Threonyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238712137|gb|EEQ04350.1| Threonyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 147/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                D    +E+ D    ++ N I   +     A      E  
Sbjct: 432 ---------------------DLWTRAED-DLAAALTENGIPFDYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  +SA++ G +       M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D 
Sbjct: 520 RFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|116514446|ref|YP_813352.1| threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093761|gb|ABJ58914.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126146|gb|ADY85476.1| Threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 643

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 163/413 (39%), Gaps = 39/413 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  +  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + +     + ++H   +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQVQEEFARTLQIIMDVYHDFDINDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ GADG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFEL----SYIGADGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N+ AH     D  +K+   L   G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNLDAH----SDYAKKVRDELVAKGFRAEIDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +     P  +++G   ++   V ++   T  +   SL E ++  S   +N
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLAEFMDKLSKDVAN 638


>gi|89100420|ref|ZP_01173283.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084849|gb|EAR63987.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 494

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      +   +G+  +V   S+G+   RV+ A+I    D +G+
Sbjct: 241 GKALQTGTSHHLGDGFAKAFGIQYSDREGELQHVHQTSWGL-TTRVIGAMIMVHGDNRGL 299

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           I P  +AP ++ ++ +  H +   D C ++  +L K    V  D   ++ G +F   ++ 
Sbjct: 300 IIPPRIAPTQLMIVPVAQHKEGVLDFCYELKEKLGK-SFRVGIDSSDKKPGWKFNEYEMK 358

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G PL++  G K + +++V +  R TG
Sbjct: 359 GIPLRLEAGPKDIENNQVVLVRRDTG 384


>gi|103486185|ref|YP_615746.1| threonyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|123380057|sp|Q1GVA9|SYT_SPHAL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|98976262|gb|ABF52413.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Sphingopyxis
           alaskensis RB2256]
          Length = 667

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 151/430 (35%), Gaps = 68/430 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G   W P G      + A +R   +  G  E+  P +  A  W +SG +  Y +
Sbjct: 265 LQQEAHGSVFWHPNGFVVWRELEAYMRRAIDAAGYREVKTPQVMDARQWEQSGHWGKYRE 324

Query: 92  EMLRLADR-----------NDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D            +D A  M   P +      IFR  +KSYR+LP   Y+    
Sbjct: 325 NMFVIPDEVPNTEDEGPIVSDDAEWMALKPMNCPAHVLIFRQGMKSYRDLPLRLYENGCC 384

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R+E      G+MR R+F   DA+ F               V  +R F  L  +      
Sbjct: 385 HRNEPHGALHGLMRVRQFTQDDAHIF---------CREDQIVEEVRNFCALADR------ 429

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I  D    + +       + F S    D    SE+   + +I      EQ+     
Sbjct: 430 ----IYKDFGFTYAIKLALRPEKRFGSDAMWD---KSEDELRNAVIEAGLATEQYG---- 478

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIE------VGHIFYFGTKYS---LP--MSATFKGAD 306
                     ++ LP      A  +E      +G  +  GT  S   LP  + A++ G D
Sbjct: 479 ----------WEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQSDRVLPDRLDASYIGED 528

Query: 307 GKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+ H   M    I G+      ++     G+   W   +AP +  +  I +      D  
Sbjct: 529 GERHRPVMLHRAIFGSYERFIGILIEHFVGRFPTW---LAPVQAVVATIVSD---ADDYA 582

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +   ARL   G     D   E+I  +     L   P  ++VG +   +  V I+      
Sbjct: 583 KAATARLVAAGIRTESDLRNEKINYKVREHSLAKVPHLLVVGKREAEEGTVAIRTLGQDG 642

Query: 426 REDMSLEEVI 435
           +  M L E I
Sbjct: 643 QRIMPLAEAI 652


>gi|320451068|ref|YP_004203164.1| prolyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320151237|gb|ADW22615.1| prolyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 477

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 7/158 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D +G+
Sbjct: 221 GKALQSGTSHYLGENFARAFDIKFQDKDLQVKYVHTTSWGL-SWRFIGAIIMTHGDDQGL 279

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           I P  +AP ++ ++ I   ++ ++V  +A   +  RL + G  V  DD  +   G +F  
Sbjct: 280 ILPPRLAPIQVVIVPIYREESREKVL-EAAFDLKQRLLQAGLRVHLDDRDQHTPGYKFHE 338

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +L G P ++ +G K +   +  +  RL G +E ++LE
Sbjct: 339 WELKGVPFRIELGPKDLEAGEAVLASRLGG-KERLTLE 375



 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E V+  ++   IKSYR+LP    Q     R ELR R   +R+ EFL ++ ++   T 
Sbjct: 110 PTSETVIGYMWSKWIKSYRDLPQLLNQWGNVVRWELRTR-PFLRTSEFLWQEGHTAHATR 168

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           E ++    +M   Y ++    G  +IP+
Sbjct: 169 EEAEEEVRRMLSIYAKLAREYG--AIPV 194


>gi|113970292|ref|YP_734085.1| threonyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|117920487|ref|YP_869679.1| threonyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|123029660|sp|Q0HIT9|SYT_SHESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225501|sp|A0KWV4|SYT_SHESA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113884976|gb|ABI39028.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella sp.
           MR-4]
 gi|117612819|gb|ABK48273.1| threonyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 642

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVQAEVSSCIQMVYDTYSTFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   + +     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRANNIEFTILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPSRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  E++     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVEEVVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|222095974|ref|YP_002530031.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221240032|gb|ACM12742.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           Q1]
          Length = 639

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|196043419|ref|ZP_03110657.1| threonyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196025728|gb|EDX64397.1| threonyl-tRNA synthetase [Bacillus cereus 03BB108]
          Length = 639

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|324326401|gb|ADY21661.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 639

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|314936214|ref|ZP_07843561.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654833|gb|EFS18578.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 645

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 173/405 (42%), Gaps = 41/405 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + +L+  SG +D Y  +M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELYKTSGHWDHYRDDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ + M+  P +      ++ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDETEEMVLRPMNCPHHMMVYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D++ F + P+  K  + ++      ++   G +    R +   P   +   +   + 
Sbjct: 382 TLNDSHIF-VRPDQIKDEFKRVVHMIQDVYEDFGFEDYTFRLSYRDPEDKEKYMDDDDMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E+ +  + D M  P             + +I E   A Y    DV   ++  ++ + 
Sbjct: 441 NKAESMLKEAVDEMGLPY------------VEAIGE--AAFYGPKLDV---QVKTAMGKE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    ++ G+DG++H   +   G+ +   R VA + E +
Sbjct: 484 ETLSTAQLD----FLLPERFDL----SYIGSDGENHRPVVIHRGVVSTMERFVAFLTEET 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I  N+  H    R+  +++ ++    G  V  DD  E++G 
Sbjct: 536 ---KG-AFPTWLAPKQVEIIPVNVDLHYDYARNLQDELKSQ----GVRVEIDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 588 KIREAQMQKIPYQIVVGDKEVENNEVNVRKYGSQDQETIERDEFI 632


>gi|229115852|ref|ZP_04245250.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228667595|gb|EEL23039.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
          Length = 640

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|332161611|ref|YP_004298188.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665841|gb|ADZ42485.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 642

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 147/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                D    +E+ D    ++ N I   +     A      E  
Sbjct: 432 ---------------------DLWTRAED-DLAAALTENGIPFDYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  +SA++ G +       M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D 
Sbjct: 520 RFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|229155963|ref|ZP_04284064.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228627570|gb|EEK84296.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 639

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|161833740|ref|YP_001597936.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri GWSS]
 gi|152206230|gb|ABS30540.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri GWSS]
          Length = 489

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++    + G  +S      +    G   YV   S+GI + R++ A+I +  D  G+
Sbjct: 231 GKSLQIATSHFLGQNFSKAFDVRYTTEKGNKEYVWATSWGI-STRLIGAIIMTHSDDNGL 289

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIY----ARLSKVGCDVFWDDMGEQI-GSQF 392
           I P  +AP +I +I + K  +Q+  +  EK+       L K G  + +D       G +F
Sbjct: 290 ILPPKIAPLQIVIIPVYKTQEQL--NLIEKLVLPLKESLEKRGISIKYDKRTYYTPGWKF 347

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              ++ G P+++ +G K +    VE+  R T  ++D+ + ++
Sbjct: 348 NEYEIKGIPIRITIGKKDIDRGTVEVVRRDTLEKKDIIINKL 389



 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 96  LADRNDK---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           + D+N K    +I  PT E ++ + ++  I SYR+LP  F Q     R E R RF  +R+
Sbjct: 105 IVDKNSKLEDELIVRPTSETIIWNSYKRWINSYRDLPIRFNQWANIIRWERRTRF-FLRT 163

Query: 153 REFLMKDAYS 162
            EFL ++ ++
Sbjct: 164 SEFLWQEGHT 173


>gi|54023348|ref|YP_117590.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|54014856|dbj|BAD56226.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 419

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 148/394 (37%), Gaps = 48/394 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G+  WLP G      +   IR  ++R G   +  P L   +L+  SG +  Y ++M  
Sbjct: 38  GSGLPYWLPSGGALRHALEEYIRTAEHRAGYRHVHSPVLGKRELYEISGHWAHYREDMYP 97

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-RSRE 154
             D   + ++  P+       I+RS   SYR LP    ++   +R EL    G + R R 
Sbjct: 98  PMDVGGEQVVLRPSLCPHHALIYRSRSHSYRELPLRIAELGAMYRAELSGVLGGLSRVRA 157

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVL 213
             + DA+ F  T +      +       R    LG+     R    GP G  + +  +  
Sbjct: 158 IHLNDAHIF-CTEDQVGAEVHAALAMIARAHAALGIAPHRFRLSLPGPGGKYVPNPAMWE 216

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             TG          +D+    +   F     D+  L+S   ++T       D H  + FD
Sbjct: 217 RATGVLVEALRAAGIDYEPADDEAAFYGPKIDVQFLDSAGREFTL-STVQVDFHQPEQFD 275

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAA 327
                                           + GADG  H  V +    IG++ R VA 
Sbjct: 276 ------------------------------LCYIGADGAKHRPVMVHRSIIGSVERAVAH 305

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E  H G   +W   +AP ++ ++ +        +   ++  R + V  ++   D G  
Sbjct: 306 LVE-VHGGAFPVW---LAPTQVVVLPLAGEQHAAAEDVVRVL-RAADVRAELAGHDQG-S 359

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +G++      +  P QV+VG K V+   + ++ R
Sbjct: 360 LGARIRAGRQV--PYQVVVGPKEVAAGTLAVRLR 391


>gi|71418959|ref|XP_811024.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70875641|gb|EAN89173.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +    R++  R G  E+  P + S+ LW+ SG +D Y  
Sbjct: 316 FHEVSPGSAFWLPHGARIYNALVEFQRKQYRRRGFEEVVSPNMFSSKLWMVSGHWDKYAD 375

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M R+  ++ D  M  +  P H      ++     SY+ LP  +    +  R+EL     
Sbjct: 376 NMFRIVVEKEDHGMKPMNCPGH----CIMYAMQQHSYKELPIRYADFGVLHRNELSGALT 431

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R R F   DA+ F
Sbjct: 432 GLTRVRRFQQDDAHIF 447


>gi|261328034|emb|CBH11011.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 799

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +    R++  R G  E+  P + S+ LW+ SG +D Y  
Sbjct: 304 FHEASPGNAFWLPHGARIYNTLIEFQRKQYRRRGFEEVVSPNMFSSRLWMVSGHWDKYAD 363

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M  +  ++ D  M   P +      +F     SYR LP  +    +  R+EL     G+
Sbjct: 364 NMFLINVEKEDHGM--KPMNCPGHCLMFAMQPHSYRELPIRYADFGVLHRNELSGALTGL 421

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 422 TRVRRFQQDDAHIF 435


>gi|225864350|ref|YP_002749728.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|225785860|gb|ACO26077.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
          Length = 639

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|297191715|ref|ZP_06909113.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721430|gb|EDY65338.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 408

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 154/396 (38%), Gaps = 56/396 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   IR  + R G   +  P L   +L+  SG +  Y  +M    
Sbjct: 23  GLPYWLPDGATVRHTLEEYIRSAERRAGYRHVYSPVLGKRELYEISGHWAHYSDDMFPPM 82

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D   + ++  P+       I+RS   SYR LP    ++   +R EL     G+ R R   
Sbjct: 83  DLGGEQVVLRPSLCPHHAVIYRSRSHSYRELPLRMAELGGMYRSELSGVLGGLTRVRAIQ 142

Query: 157 MKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIV 212
           + DA+ F   D   E ++ +   +     R +  LG+     R    GP G     +++ 
Sbjct: 143 LNDAHIFCTLDQVAEEARAALEMIR----RAYEALGITPARYRLSLPGPGG-----KYVA 193

Query: 213 LADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             +  +       D +D   +P E  + +             A Y    DV   ++ D  
Sbjct: 194 APEKWKRSTALLTDVLDRSGLPYEAAEGE------------AAFYGPKIDV---QVTDGA 238

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVI 329
                +S   ++    F+   ++ L     + GADG  H  V +    IG++ R VA +I
Sbjct: 239 GRESTLSTVQVD----FHQPEQFDL----HYIGADGARHRPVMVHRSIIGSVERAVAHLI 290

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIK----AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           E  H G    W   +AP +++++ I      H       C  +  R    G +       
Sbjct: 291 E-QHGGAFPAW---LAPTQVAILPISDAELPHAAALARRCAGLGLRAEIAGPER------ 340

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +G++   A L+  P Q ++G+K  +D  V ++ R
Sbjct: 341 GTLGARVREARLV--PYQAVIGAKEAADDHVALRLR 374


>gi|148381286|ref|YP_001255827.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932635|ref|YP_001385663.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153936422|ref|YP_001389069.1| prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|171769224|sp|A7FYU0|SYP_CLOB1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172047866|sp|A5I768|SYP_CLOBH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148290770|emb|CAL84901.1| prolyl-tRNA synthetase 1 [Clostridium botulinum A str. ATCC 3502]
 gi|152928679|gb|ABS34179.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152932336|gb|ABS37835.1| proline--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 478

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/358 (19%), Positives = 142/358 (39%), Gaps = 79/358 (22%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G  D        LA+R    +   PT E +  + +   ++SY++LP  + Q    +
Sbjct: 97  WVTHGGDDE-------LAER----LCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVV 145

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMR 196
           ++    RP    +R+ EFL ++ ++   T E ++ HS     +  L ++ RL    + M 
Sbjct: 146 RWEKTTRP---FLRTTEFLWQEGHTIHETKEEAESHS-----LKILNMYSRLCEDMLAMP 197

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                         +V+    + + F   D              D  ++ S++    A  
Sbjct: 198 --------------VVMGKKTDKEKFAGAD--------------DTYTIESLMHDGKALQ 229

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A TS                            Y G  +S   +  F   +GK  Y    +
Sbjct: 230 AGTS---------------------------HYLGQNFSKAFAIQFSDRNGKLDYPHYTT 262

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + +   R++ A+I    D  G+  P  +AP +  +I +  H +   +  +++  +L+KV 
Sbjct: 263 WAV-TTRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKEKLAKV- 320

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             V  DD  +  G +++  ++ G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 321 VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEI 378


>gi|317013544|gb|ADU80980.1| threonyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 612

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ E     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPIWLPKGARLRKRIEDLLSEALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|161760548|ref|NP_907033.2| threonyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
          Length = 602

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    + A++ E   R     +  P +  +DLW  SG Y +Y KE +   
Sbjct: 228 GLPIWLPAGARLRRRLEAMLTEAHIRRNYEPVRGPEILKSDLWKISGHYQNY-KENMYFT 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      ++ S ++SYR LP  FY+  +  R E      G++R REF 
Sbjct: 287 KIDEVEYGIKPMNCVGHIKVYGSGVRSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFT 346

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 347 QDDAHIF 353


>gi|118477787|ref|YP_894938.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|229184596|ref|ZP_04311798.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|118417012|gb|ABK85431.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598913|gb|EEK56531.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
          Length = 639

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|74317025|ref|YP_314765.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123731846|sp|Q3SK34|SYT_THIDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|74056520|gb|AAZ96960.1| threonyl-tRNA synthetase, class IIa [Thiobacillus denitrificans
           ATCC 25259]
          Length = 637

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 157/433 (36%), Gaps = 59/433 (13%)

Query: 17  DAEIASHK-LMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ L  +  ++H   +  G+  W P G      +   +RE+    G  E+  P 
Sbjct: 239 EAEKRDHRRLAKQLDLLHMQDEAPGMVFWHPKGWIVWQQIEQYMREKFVEYGYQEVRTPA 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    +W +SG +++Y   M   A  N    +  P +      IF S + SYR+LP    
Sbjct: 299 VMDRSMWEKSGHWENYRDNMFTTASENRDYAV-KPMNCPGHVQIFNSGLHSYRDLPLRLA 357

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F +  E  +       V   +++   G   
Sbjct: 358 EFGSCHRNEPSGALHGIMRVRGFTQDDAHIFCME-EQVEQEVADFIVMLQKVYADFGFND 416

Query: 193 IPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSI 248
           + ++  + P   +G D S +               K+ + F + P E   +   I     
Sbjct: 417 VLVKLSTRPDKRVGSDESWD----KAESALAAALEKNGLSFDLQPGEGAFYGPKIEFT-- 470

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFK 303
                             L D+L             G ++  GT    ++LP  + A F 
Sbjct: 471 ------------------LKDTL-------------GRLWQCGTIQLDFNLPVRLGAEFV 499

Query: 304 GADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             D       M    I G+M     ++   H G   +W   +AP ++ ++NI        
Sbjct: 500 AEDNTRKIPVMLHRAILGSMERFIGILIEHHAGNFPLW---LAPVQVMVMNISERQAA-- 554

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E +   L + G     D    +I  +     L   P Q++VG K +    V ++ R 
Sbjct: 555 -YAEAVAEALRRAGIRAALDLSNNKINYKIREHSLQKLPYQLVVGDKEMEARVVAVRARG 613

Query: 423 TGIREDMSLEEVI 435
                 + L+++I
Sbjct: 614 NQDMGQLGLDDLI 626


>gi|71655606|ref|XP_816364.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881486|gb|EAN94513.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 817

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +    R++  R G  E+  P + S+ LW+ SG +D Y  
Sbjct: 317 FHEVSPGSAFWLPHGARIYNALVEFQRKQYRRRGFEEVVSPNMFSSKLWMVSGHWDKYAD 376

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M R+  ++ D  M  +  P H      ++     SY+ LP  +    +  R+EL     
Sbjct: 377 NMFRIVVEKEDHGMKPMNCPGH----CIMYAMQQHSYKELPIRYADFGVLHRNELSGALT 432

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R R F   DA+ F
Sbjct: 433 GLTRVRRFQQDDAHIF 448


>gi|262341223|ref|YP_003284078.1| threonine--tRNA ligase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272560|gb|ACY40468.1| threonine--tRNA ligase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 424

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G    +N+   + + Q ++G   +  P +    L+++SG +  YGK+  +  
Sbjct: 37  GLPLWLPRGTILRNNLEEFLTDIQKKSGYEMVVTPHIGHKKLYIQSGHWRKYGKDNFKPI 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
              R ++  +  P +     +++RS   SYR+LP  F +    +R E      G+ R R 
Sbjct: 97  QTPREEEEFLLKPMNCPHHCEVYRSQEWSYRDLPKRFAEFGTVYRYEQSGELHGLTRVRS 156

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           F   DA+ F  T +     + K+      +F  LG     +R
Sbjct: 157 FTQDDAHIF-CTYDQVLEEFKKVINLVFYVFRCLGFSEYTVR 197


>gi|72388976|ref|XP_844783.1| threonyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|62176044|gb|AAX70165.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei]
 gi|70801317|gb|AAZ11224.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 799

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +    R++  R G  E+  P + S+ LW+ SG +D Y  
Sbjct: 304 FHEASPGNAFWLPHGARIYNTLIEFQRKQYRRRGFEEVVSPNMFSSRLWMVSGHWDKYAD 363

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M  +  ++ D  M   P +      +F     SYR LP  +    +  R+EL     G+
Sbjct: 364 NMFLINVEKEDHGM--KPMNCPGHCLMFAMQPHSYRELPIRYADFGVLHRNELSGALTGL 421

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 422 TRVRRFQQDDAHIF 435


>gi|325276812|ref|ZP_08142513.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324098050|gb|EGB96195.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 640

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 3/171 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R  Q   G  E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENGYQEIKTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           R R F+  DA+ F  T E  K          L ++   G   I M+  + P
Sbjct: 374 RVRGFVQDDAHIF-CTEEQVKKEAADFIKLTLDVYKDFGFSDIAMKLSTRP 423


>gi|260770313|ref|ZP_05879246.1| threonyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260615651|gb|EEX40837.1| threonyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 642

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFIRHKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N    I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENRDYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 376 RVRGFTQDDAHIF 388


>gi|253573561|ref|ZP_04850904.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847089|gb|EES75094.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 483

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT ++      +   +    YV   S+G+ + R++ ++I    D +G+
Sbjct: 226 GRAVQAGTSHYLGTNFAKAFDIQYLNRENVREYVHTTSWGV-STRLIGSLIMVHGDDRGL 284

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
             P  VAP ++ +I I   K  + V   A ++++A L K G  V  DD  + + G +F  
Sbjct: 285 ALPPKVAPKQVMIIPIGPPKTWEAVVGRA-DELFAELKKAGIRVGIDDRADFRPGWKFNE 343

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
            ++ G P+++ +G + + +    +  R++G    +++D  +EEV
Sbjct: 344 YEMRGVPVRLEIGPRDMENGVCVLVSRISGEKKVVQQDRLVEEV 387


>gi|238765296|ref|ZP_04626223.1| Threonyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238696469|gb|EEP89259.1| Threonyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 642

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 147/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                D    +E+ D    ++ N I   +     A      E  
Sbjct: 432 ---------------------DLWTRAED-DLAAALTENGIPFDYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  +SA++ G +       M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D 
Sbjct: 520 RFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|228985474|ref|ZP_04145631.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774239|gb|EEM22648.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 639

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|228475159|ref|ZP_04059885.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270770|gb|EEK12172.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 645

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 173/405 (42%), Gaps = 41/405 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P L + +L+  SG +D Y  +M    
Sbjct: 262 GLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELYKTSGHWDHYRDDMFPPM 321

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ + M+  P +      ++ +   SYR LP    ++    R E      G+ R R  
Sbjct: 322 KLDETEEMVLRPMNCPHHMMVYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLA 214
            + D++ F + P+  K  + ++      ++   G +    R +   P   +   +   + 
Sbjct: 382 TLNDSHIF-VRPDQIKDEFKRVVHMIQDVYEDFGFEDYTFRLSYRDPEDKEKYMDDDDMW 440

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E+ +  + D M  P             + +I E   A Y    DV   ++  ++ + 
Sbjct: 441 NKAESMLKEAVDEMGLPY------------VEAIGE--AAFYGPKLDV---QVKTAMGKE 483

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESS 332
           + +S   ++    F    ++ L    ++ G+DG++H   +   G+ +   R VA + E +
Sbjct: 484 ETLSTAQLD----FLLPERFDL----SYIGSDGENHRPVVIHRGVVSTMERFVAFLTEET 535

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              KG  +P  +AP ++ +I  N+  H    R+  +++ ++    G  V  DD  E++G 
Sbjct: 536 ---KG-AFPTWLAPKQVEIIPVNVDLHYDYARNLQDELKSQ----GVRVEIDDRNEKMGY 587

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   A +   P Q++VG K V +++V ++   +  +E +  +E I
Sbjct: 588 KIREAQMQKIPYQIVVGDKEVENNEVNVRKYGSQDQETIERDEFI 632


>gi|85375301|ref|YP_459363.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|123293655|sp|Q2N6X5|SYT_ERYLH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84788384|gb|ABC64566.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 672

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/437 (21%), Positives = 163/437 (37%), Gaps = 82/437 (18%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G K    + A +R + +  G  E+  P +  A  W +SG +  Y +
Sbjct: 270 LQEEAHGSVFWHPQGYKIWRELEAYMRRKMDGAGYREIKTPQVMDARQWEQSGHWGKYRE 329

Query: 92  EMLRLAD-------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            M  + D             ++   M   P +      +F+  I SYR+LP    ++   
Sbjct: 330 NMFVIPDEIPNTEDEGELVSKDADWMALKPMNCPAHVLVFKQGITSYRDLPIRLGEMGCC 389

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R+E      G+MR R+F   DA+ F               V  +R F +L         
Sbjct: 390 HRNEPHGALHGLMRVRQFTQDDAHIF---------CTEDQVVEEVRAFCKL--------- 431

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +  +  D   ++ V       Q F S++           D+D         EQ      
Sbjct: 432 -ADEVYRDFGFDYDVKLALRPEQRFGSEE-----------DWDK-------AEQELRDAV 472

Query: 258 ATSDVHNEKL-FDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGA 305
           A + + N+   ++ LP      A  +E      +G  +  GT      LP  + AT+ G 
Sbjct: 473 AEAGMANDDYGWEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQGDRVLPERLDATYVGE 532

Query: 306 DGKDHYVQM------GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-D 358
           DG  H   M      GSY     R +  +IE    G+  +W   +AP +  +  I +  D
Sbjct: 533 DGGKHRPVMLHRAIFGSY----ERFIGILIE-HFAGRLPVW---LAPTQAVVATIVSDAD 584

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              ++A     A+L   G  V  D   E+I  +     L   P  ++VG +   +  V +
Sbjct: 585 GYAKEAV----AKLEAAGIRVDGDLRNEKINFKVREHSLAKVPHLLVVGKREAEEGTVAV 640

Query: 419 KHRLTGIREDMSLEEVI 435
           +      ++ MSL++ I
Sbjct: 641 RTLGEKEQQVMSLDDAI 657


>gi|332967802|gb|EGK06905.1| threonine--tRNA ligase [Desmospora sp. 8437]
          Length = 279

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G    + + +  R+ Q   G  E+  P + +  LW +SG +D Y 
Sbjct: 1   MFSEEAPGMPFYLPKGMTIRNELESFSRKLQKEAGYQEVRTPLMMNQRLWEQSGHWDHY- 59

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +     ++ A    P +      +F+  I+SYR+LP    +     R EL     G+
Sbjct: 60  RENMYFTHVDETAFSIKPMNCPGHMLVFKHGIRSYRDLPLRLAEFGQVHRHELSGALHGM 119

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 120 FRVRTFTQDDAHIF 133


>gi|295090762|emb|CBK76869.1| prolyl-tRNA synthetase, family I [Clostridium cf. saccharolyticum
           K10]
          Length = 477

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      F   D K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFGIQFSDKDNKLKYVHQTSWGM-TTRLIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ I+   +   D   ++   LS  G  V  DD  +  G +F+ +++ 
Sbjct: 284 VLPPRIAPTQVVIVPIRQQAEGVLDKAYELKDILS--GFSVKVDDSDKSPGWKFSESEMR 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K +  ++  +  R T  +  +SL+E+
Sbjct: 342 GIPVRVEIGPKDLEQNQAVLVRRDTHEKITVSLDEI 377


>gi|322819645|gb|EFZ26679.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +    R++  R G  E+  P + S+ LW+ SG +D Y  
Sbjct: 316 FHEVSPGSAFWLPHGARIYNALVEFQRKQYRRRGFEEVVSPNMFSSKLWMVSGHWDKYAD 375

Query: 92  EMLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M R+  ++ D  M  +  P H      ++     SY+ LP  +    +  R+EL     
Sbjct: 376 NMFRIVVEKEDHGMKPMNCPGH----CIMYAMQQHSYKELPIRYADFGVLHRNELSGALT 431

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R R F   DA+ F
Sbjct: 432 GLTRVRRFQQDDAHIF 447


>gi|229102972|ref|ZP_04233661.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228680387|gb|EEL34575.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 640

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|168178993|ref|ZP_02613657.1| prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226950778|ref|YP_002805869.1| prolyl-tRNA synthetase [Clostridium botulinum A2 str. Kyoto]
 gi|259511586|sp|C1FM10|SYP_CLOBJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182670280|gb|EDT82256.1| prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226841931|gb|ACO84597.1| proline--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 478

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/358 (19%), Positives = 142/358 (39%), Gaps = 79/358 (22%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G  D        LA+R    +   PT E +  + +   ++SY++LP  + Q    +
Sbjct: 97  WVTHGGDDE-------LAER----LCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVV 145

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMR 196
           ++    RP    +R+ EFL ++ ++   T E ++ HS     +  L ++ RL    + M 
Sbjct: 146 RWEKTTRP---FLRTTEFLWQEGHTIHETKEEAESHS-----LKILNMYSRLCEDMLAMP 197

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                         +V+    + + F   D              D  ++ S++    A  
Sbjct: 198 --------------VVMGKKTDKEKFAGAD--------------DTYTIESLMHDGKALQ 229

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A TS                            Y G  +S   +  F   +GK  Y    +
Sbjct: 230 AGTS---------------------------HYLGQNFSKAFAIQFSDRNGKLDYPHYTT 262

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + +   R++ A+I    D  G+  P  +AP +  +I +  H +   +  +++  +L+KV 
Sbjct: 263 WAV-TTRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKEKLAKV- 320

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             V  DD  +  G +++  ++ G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 321 VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEI 378


>gi|261867949|ref|YP_003255871.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413281|gb|ACX82652.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 643

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 158/421 (37%), Gaps = 50/421 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F + P+  +            I+   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIFCM-PDQVESEVTSCIKMVYDIYSTFGFENIKVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                + D  E                   D    +  NS+  +      A      E  
Sbjct: 432 ----EMWDKAE------------------ADLAKALEHNSLSYEIQEGEGAFYGPKLEFA 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L DSL        R  + G I      + LP  ++A++ G D +     M    I G++ 
Sbjct: 470 LTDSLD-------REWQCGTI---QLDFFLPERLNASYVGEDNERKVPVMIHRAILGSIE 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I   + G    +P  +AP ++ ++NI        +  +K+  +LS  G  V  D 
Sbjct: 520 RFIGIITEEYAG---FFPAWLAPTQVVVMNITDSQS---EYVQKVAKQLSDAGLRVKTDL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E++G +     L   P  ++ G K +   KV ++ R        ++EE ++    +  
Sbjct: 574 RNEKVGFKIREHTLRRVPYMLVCGDKEIEAGKVAVRTRKGQDLGTFTVEEFLDILKKQVR 633

Query: 444 N 444
           N
Sbjct: 634 N 634


>gi|229091361|ref|ZP_04222576.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228691990|gb|EEL45732.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
          Length = 639

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|196033851|ref|ZP_03101262.1| threonyl-tRNA synthetase [Bacillus cereus W]
 gi|228945992|ref|ZP_04108333.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|195993531|gb|EDX57488.1| threonyl-tRNA synthetase [Bacillus cereus W]
 gi|228813685|gb|EEM59965.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 639

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|19703946|ref|NP_603508.1| threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|22654111|sp|Q8RFS6|SYT_FUSNN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19714122|gb|AAL94807.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 620

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/428 (19%), Positives = 171/428 (39%), Gaps = 56/428 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R K+ L +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R 
Sbjct: 209 RLKHHLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLIDLWRR 264

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  ++  P + + +LW  SG + +Y +E +  ++ ++      P +       F+
Sbjct: 265 EHEKAGYQQLETPIMLNKELWEISGHWFNY-RENMYTSEIDELEFAIKPMNCPGGVLAFK 323

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     + 
Sbjct: 324 HQLHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVV 382

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               + + +L                    E+ +   T   +   S++  D    +    
Sbjct: 383 NLIDKFYSKL-----------------FGFEYEIELSTKPEKAIGSQEIWDMAEAALAGA 425

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
            D +     I     A Y    D    K+ D+             +G ++  GT    ++
Sbjct: 426 LDKLGRKYKINPGDGAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFN 469

Query: 296 LP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP     T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++
Sbjct: 470 LPERFDVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVL 526

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFV 411
            +   +  C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V
Sbjct: 527 TL---NDECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEV 583

Query: 412 SDSKVEIK 419
            + +V I+
Sbjct: 584 ENKEVNIR 591


>gi|315181382|gb|ADT88295.1| threonyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 642

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + N  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFIRHKLNEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N    I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENRDYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 376 RVRGFTQDDAHIF 388


>gi|217979642|ref|YP_002363789.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|217505018|gb|ACK52427.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 648

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G   W P G      + A +R      G +E++ P +    LW  SG + ++ + 
Sbjct: 257 QEEGPGAIFWHPKGWTLFQTLIAYMRRRMEADGYLEVNTPQVLDRALWETSGHWQTFREH 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      +++     P +      IF++ +KSYR+LP    +  +  R E      GVMR
Sbjct: 317 MFLTKTEDERIFALKPMNCPGHVQIFKNGLKSYRDLPLKIGEFGVVHRYEPSGALHGVMR 376

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 377 VRAFTQDDAHIF 388


>gi|315924324|ref|ZP_07920547.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622395|gb|EFV02353.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 644

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  WLP G K  + +    R+E  + G  E+S P +    LW +SG +D Y   M  
Sbjct: 258 APGMPYWLPKGWKLFNTLLEFWRDEHEKRGYQEISSPQINYNKLWRQSGHWDHYKDNMFV 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           +    ++     P +      +++   +SYR+LP       +  R E   +  G++R + 
Sbjct: 318 IPVSENEIYGVKPMNCPNAIVVYKRKTRSYRDLPLRLSDCDVLHRKEKSGQLHGLLRVQM 377

Query: 155 FLMKDAYSF 163
           F   D+++F
Sbjct: 378 FRQDDSHNF 386


>gi|166365900|ref|YP_001658173.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088273|dbj|BAG02981.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 618

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/416 (20%), Positives = 158/416 (37%), Gaps = 67/416 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+     G   +  P L + DLW  SG +D Y   M    
Sbjct: 241 GLVFWHPRGATMRYLIEDYWRQAHLEAGYQFLYTPHLANLDLWKTSGHWDFYRDNMFEAI 300

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   ++    P +       +++ + SYR  P  + ++   +R E      G+MR R F 
Sbjct: 301 ELEQQSYQIKPMNCPFHVLTYQNDLHSYREFPLRWAELGTVYRYERSGVLHGLMRVRGFT 360

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L PE                          + AE   I G L+    +L+D 
Sbjct: 361 QDDAHIFCL-PE-------------------------QIAAE---ILGVLNLTEKILSDF 391

Query: 217 GET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           G T  Q+  S        PS++   D +         W    AA  +  N K +D + + 
Sbjct: 392 GFTNYQINLSTR------PSKSVGSDSV---------WELATAALIEALNAKKWDYIEDQ 436

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
              +  G +        +G ++   T    ++LP      +   DG ++  + +     G
Sbjct: 437 GGGAFYGPKIDIKIQDAIGRMWQCSTIQVDFNLPERFDMQYVARDGTRERPIMIHRAIFG 496

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++  ++ G   +W   +AP ++ L+ +    Q        +  +L + G  V 
Sbjct: 497 SLERFFGILIENYAGDFPLW---LAPIQVRLLPVSDEQQ---HYALGVAMQLKQAGYRVE 550

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D  GE++G Q    +L   P+  ++G + VS   + ++ R  G    M+L +++ 
Sbjct: 551 IDKTGERLGKQIRTGELEKIPVLAVIGKREVSSKTLSVRTRQGGDLGSMTLVDLLG 606


>gi|30262390|ref|NP_844767.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47527681|ref|YP_019030.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185231|ref|YP_028483.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|165870612|ref|ZP_02215266.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167633022|ref|ZP_02391348.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639601|ref|ZP_02397871.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170686938|ref|ZP_02878157.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170706731|ref|ZP_02897190.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177649587|ref|ZP_02932589.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190565155|ref|ZP_03018075.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227814802|ref|YP_002814811.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229603163|ref|YP_002866723.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684964|ref|ZP_05148824.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254722370|ref|ZP_05184158.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254737411|ref|ZP_05195115.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743403|ref|ZP_05201088.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751726|ref|ZP_05203763.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254760245|ref|ZP_05212269.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30257021|gb|AAP26253.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47502829|gb|AAT31505.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179158|gb|AAT54534.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|164713767|gb|EDR19290.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512310|gb|EDR87686.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167531834|gb|EDR94499.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128462|gb|EDS97330.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170668989|gb|EDT19733.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172084661|gb|EDT69719.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190563182|gb|EDV17147.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227004862|gb|ACP14605.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229267571|gb|ACQ49208.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 639

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|328710126|ref|XP_001950747.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like
           [Acyrthosiphon pisum]
          Length = 714

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 161/414 (38%), Gaps = 52/414 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   + P G    + +   I+ E  + G  E+  P + +  LW  SG +  Y 
Sbjct: 326 FFHELSPGSCFFQPKGAHIYNTLIEFIKSEYRKRGFQEVVSPNIYNVKLWQTSGHWAHYA 385

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    D   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 386 ENMFSF-DVEKETYALKPMNCPGHCLMFDHRNRSWRELPLRMADFGVLHRNELSGALTGL 444

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F   DA+ F  T +  +   + +   +LR  + +   +  +R  + P       +
Sbjct: 445 TRVRRFQQDDAHIFCTTDQIGQEMMSSL--DFLRHVYTVFGFTFHLRLSTRP------EK 496

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVH 263
           ++     GE +++            EN +     SLNS  E WT      A Y    D+ 
Sbjct: 497 YL-----GELEMW------------ENAEKQLADSLNSFGEPWTLNPGDGAFYGPKIDI- 538

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
              + D+L    + +   ++    F    +++L     F    G K   V +     G++
Sbjct: 539 --TISDALKRQHQCATIQLD----FQLPIRFNL----NFISESGEKKRPVIIHRAIFGSV 588

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFW 381
             + A++  S  GK   WP  ++P +  +I +    D+      ++IY        DV  
Sbjct: 589 ERMIAILTESFAGK---WPFWLSPRQAIVIPVGPQFDEYSEKVKKEIYEAGFMCDVDV-- 643

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D G+ +  +   A L  +   ++VG K  + + V ++ R   +  + S+EE I
Sbjct: 644 -DHGDTLNKKIRNAQLAQYNFILVVGDKEKTANTVNVRTRDNNVHGEFSIEETI 696


>gi|313678636|ref|YP_004056376.1| glycine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950688|gb|ADR25283.1| glycine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 458

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 13/133 (9%)

Query: 319 IGAMRVVAAVIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           IG  R++ A++  S+D + I           P SVAP+K +++ +    +   D  E+IY
Sbjct: 329 IGLDRLMLALLIDSYDEEAISENDSRIVLRMPKSVAPYKFAILPLV---KKLNDKAEEIY 385

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K+   + +DD G  IG ++   D +G P  + V    ++D  + I++R + ++E +
Sbjct: 386 KELLKLNIAITYDDAG-SIGKRYRRQDSIGTPYCITVDYDSLNDECITIRNRDSMLQERI 444

Query: 430 SLEEVINYASHRF 442
           S+ E+ N A + F
Sbjct: 445 SISELYNLAKNDF 457


>gi|168182030|ref|ZP_02616694.1| proline--tRNA ligase [Clostridium botulinum Bf]
 gi|182674785|gb|EDT86746.1| proline--tRNA ligase [Clostridium botulinum Bf]
          Length = 478

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/358 (18%), Positives = 142/358 (39%), Gaps = 79/358 (22%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G  D        LA+R    +   PT E +  + +   ++SY++LP  + Q    +
Sbjct: 97  WVTHGGDDE-------LAER----LCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVV 145

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMR 196
           ++    RP    +R+ EFL ++ ++   T E ++ HS     +  L ++ RL    + M 
Sbjct: 146 RWEKTTRP---FLRTTEFLWQEGHTIHETKEEAESHS-----LKILNMYSRLCEDMLAMP 197

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                         +V+    + + F   D              D  ++ S++       
Sbjct: 198 --------------VVMGKKTDKEKFAGAD--------------DTYTIESLMH------ 223

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                                  + ++ G   Y G  +S   +  F   +GK  Y    +
Sbjct: 224 ---------------------DGKALQAGTSHYLGQNFSKAFAIQFSDRNGKLDYPHYTT 262

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + +   R++ A+I    D  G+  P  +AP +  +I +  H +   +  +++  +L+KV 
Sbjct: 263 WAV-TTRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKEKLAKV- 320

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             V  DD  +  G +++  ++ G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 321 VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEI 378


>gi|89053589|ref|YP_509040.1| threonyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|88863138|gb|ABD54015.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Jannaschia sp.
           CCS1]
          Length = 648

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 9/177 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G +E++ P +    LW +SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPNGWTIYTTLQDYMRRKQRADGYVEVNTPQVVDRALWEKSGHWDKYQE 319

Query: 92  EMLRLADRNDKAMIYG-----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    + A         P +     ++F   +KSYR+LP    +     R E    
Sbjct: 320 HMFIVEVDEEHAQTKAINALKPMNCPCHVEVFNQGLKSYRDLPLRMAEFGSCSRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP 201
             G+MR R F   DA+ F    E    +    F+++L  ++  LG +S  +   + P
Sbjct: 380 LHGIMRVRGFTQDDAHIF--CTEDQIEAECAKFITFLSGVYKDLGFESFDIAFATRP 434


>gi|319786721|ref|YP_004146196.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465233|gb|ADV26965.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 634

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/411 (18%), Positives = 156/411 (37%), Gaps = 45/411 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R     TG  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSVWQVVEQYMRRVYRETGYGEVRCPQILDVSLWKKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      IF   + SYR+LP  + +     R+E      G++
Sbjct: 316 NMF-FTESEKRTYAVKPMNCPGHVQIFNQGLHSYRDLPIRYGEFGSCHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F  T +  +          L+++   G + I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVF-CTEQQIESEVRAFHAQALKVYTDFGFEDIQIKIALRPDNRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +              ++D +   + +   ++ ++    +        Y    + H   L
Sbjct: 434 WD-------------KAEDALRSALRASGVEWQELPGEGAF-------YGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        + H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------RRHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G+   +P  +AP +  ++NI     V  +   ++   L+  G  V  D   E+
Sbjct: 524 ILIEHHAGQ---FPAWLAPVQAVVMNIT---DVQAEYVNEVRKVLANQGFRVEADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           IG +     L   P  ++VG +   +  V ++ R +G  ED+    V ++A
Sbjct: 578 IGFKIREHTLQRVPYLLVVGDREKENGAVAVRTR-SG--EDLGTMSVSDFA 625


>gi|52143093|ref|YP_083736.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|51976562|gb|AAU18112.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 639

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|73540970|ref|YP_295490.1| threonyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|123732957|sp|Q472N7|SYT_RALEJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72118383|gb|AAZ60646.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Ralstonia
           eutropha JMP134]
          Length = 635

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 9/205 (4%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    V   +R      G  E+  P +    LW +SG + +Y K
Sbjct: 255 LQEEAPGMVFWHPKGWQVWQAVEQYMRGRLTAAGYDEVRTPQVMDRSLWEKSGHWQNY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +      IF   ++SYR+LP    +     R+E      G+M
Sbjct: 314 ENMFVTESEKRDYAIKPMNCPGHVQIFNHGLRSYRDLPLRLAEFGACHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           R R F+  DA+ F    +      ++N++  S   ++   G K + ++    P     S 
Sbjct: 374 RVRGFVQDDAHIFCTEEQIVAEAKAFNELAFS---VYDDFGFKDVAVKLSLRPAQRAGSD 430

Query: 209 EFIVLADTGETQVF--CSKDFMDFP 231
           E    A+ G       C  D+ + P
Sbjct: 431 EVWDHAEEGLRLALRACGVDWEELP 455


>gi|319404307|emb|CBI77900.1| Threonyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 654

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 21/215 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  + S G+  W P G K   N+ + +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEESPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK-AMIYGPTHEEVMTD 116
           +     E+  P +    LW  SG +  Y + M +      D ND+      P +      
Sbjct: 289 DNHKYAEVQAPQVLDKSLWEISGHWGWYKENMFKTIPAADDWNDEYTYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH--S 173
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    S
Sbjct: 349 IFKHGLKSYRDLPVRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIFCTEEQLADECLS 408

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            N + +S    +   G K I ++  + P   +G D
Sbjct: 409 INDLILS---TYADFGFKEISLKLSTRPEKRVGSD 440


>gi|167389590|ref|XP_001739012.1| threonyl-tRNA synthetase, cytoplasmic [Entamoeba dispar SAW760]
 gi|165897485|gb|EDR24628.1| threonyl-tRNA synthetase, cytoplasmic, putative [Entamoeba dispar
           SAW760]
          Length = 676

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 10  ILQENPRDAEIAS---HKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L+E  + AE A    H+L+ R       H  S G   WLP G +  + +  +IR E   
Sbjct: 266 LLKEYIKRAEEADKRDHRLIGRQQDLFFFHVLSPGSCFWLPHGTRIYNKLVQLIRSEYRV 325

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +  + LW  SG +  Y  +M    +   +     P +      +F S  +
Sbjct: 326 LGYQEVITPNIFLSTLWETSGHWQHYKDDMFSF-ECEKQTFALKPMNCPGHCVMFASKKR 384

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP  + +  +  R+EL     G+ R R F+  D++ F
Sbjct: 385 SYRELPLRYAEFGVLHRNELTGALHGLTRVRRFVQDDSHIF 425


>gi|254456980|ref|ZP_05070408.1| threonyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085772|gb|EDZ63056.1| threonyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 602

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           WLP G +    + +++ +   + G   +  P +  +DLW  SG Y +YG+ M      +D
Sbjct: 232 WLPAGGRLRARLESLLYKAHRKRGYEPVRGPEMLRSDLWKTSGHYQNYGENMY-FTKIDD 290

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
                 P +      ++   ++SYR+LP  +++  +  R E      G+ R REF   DA
Sbjct: 291 IEFGVKPMNCVGHIKVYEDELRSYRDLPIKYFEYGVVHRHEFTGALHGLFRVREFTQDDA 350

Query: 161 YSF 163
           + F
Sbjct: 351 HIF 353


>gi|299745880|ref|XP_001841372.2| tars protein [Coprinopsis cinerea okayama7#130]
 gi|298406796|gb|EAU80442.2| tars protein [Coprinopsis cinerea okayama7#130]
          Length = 720

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G +  + +  ++REE  + G  E+  P + ++ LW  SG + +Y ++M  
Sbjct: 333 SPGSCFWLPHGTRIYNTLVELMREEYFKRGYQEVISPNMYNSKLWETSGHWQNYKEDMFT 392

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L    +K  +  P +      IF S  +SY+ LP    +  +  R+E      G+ R R 
Sbjct: 393 LDVEKEKWAL-KPMNCPGHCLIFDSRDRSYKELPIRMAEFGIIHRNEASGALTGLTRVRR 451

Query: 155 FLMKDAYSF 163
           F+  D + F
Sbjct: 452 FVQDDTHVF 460


>gi|332525938|ref|ZP_08402079.1| threonyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109489|gb|EGJ10412.1| threonyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 635

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 158/433 (36%), Gaps = 71/433 (16%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +HS G   W P G      V   +R     
Sbjct: 231 YLRMLEE----AEKRDHRKLGRELDLFHLDEHSPGTVFWHPKGWTVWQEVEQYMRRVYRD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+  P +    LW ++G +D Y + M    +++ D A+   P +      IF+  I
Sbjct: 287 NGYQEVKGPQILDKALWEKTGHWDKYRENMFTTESEKRDYAL--KPMNCPGHILIFKQGI 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE---GSKHSYNKMF 178
           KSYR+LP  + +     R+E      G+MR R F   D + F  T +   G   +Y  + 
Sbjct: 345 KSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIF-CTEDMILGECVAYTALL 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCS--KDFMDFPI- 232
               R F   G   I  +  + P   IG D       + D  E  +  S  +   D+ I 
Sbjct: 404 QKVYRDF---GFTDILYKVATRPEKRIGSD------AIWDKAEEALIESLKRSGCDYVIA 454

Query: 233 PSENTDFDDIISL---NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           P +   +   I     ++I  QW            E+L                      
Sbjct: 455 PGDGAFYGPKIEYTLKDAIGRQWQCGTMQVDFSMAERL---------------------- 492

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                     A +   DG + H V +    +G++     ++   H G   +W   V    
Sbjct: 493 ---------DAEYVAEDGSRRHPVMLHRAIVGSLERFIGILIEQHAGALPVWLAPVQAVV 543

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            S+ + +A      D   ++   L K G  V  D   E+I  +     +   P  ++VG 
Sbjct: 544 ASITDSQA------DYAAEVAKSLQKQGLRVHLDLRNEKINYKIREHSVQKAPFILVVGD 597

Query: 409 KFVSDSKVEIKHR 421
           K  ++  V ++ R
Sbjct: 598 KEKANGAVAVRAR 610


>gi|194366578|ref|YP_002029188.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|238693469|sp|B4SQH4|SYT_STRM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194349382|gb|ACF52505.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 633

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/410 (19%), Positives = 148/410 (36%), Gaps = 44/410 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+   +TG  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWALWQVVEQYMRKVYRKTGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYALKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F  T    +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVF-CTENQVEAEVTAFHQQALAVYQHFGFDEIQVKIALRPESRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+        S       +P E                  A Y    + H   L
Sbjct: 434 WD---KAEGALRSALSSNGVEWQELPGEG-----------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFLG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           ++   H G+   +P  +AP ++ + NI  A  +   D  + +  +  +V  D+      E
Sbjct: 524 ILIEHHAGQ---FPAWLAPTQVVVANITDAQAEYVSDVTKTLADQGFRVSADL----RNE 576

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +IG +     L   P  +++G +   +  V ++ R       MSL+  I 
Sbjct: 577 KIGYKIREHTLQRVPYLLVIGDREKENGAVAVRTRSGEDLGSMSLQAFIE 626


>gi|34482934|emb|CAE09933.1| THREONYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 536

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    + A++ E   R     +  P +  +DLW  SG Y +Y KE +   
Sbjct: 162 GLPIWLPAGARLRRRLEAMLTEAHIRRNYEPVRGPEILKSDLWKISGHYQNY-KENMYFT 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      ++ S ++SYR LP  FY+  +  R E      G++R REF 
Sbjct: 221 KIDEVEYGIKPMNCVGHIKVYGSGVRSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFT 280

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 281 QDDAHIF 287


>gi|238757782|ref|ZP_04618965.1| Threonyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238704025|gb|EEP96559.1| Threonyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 642

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 147/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                D    +E+ D    ++ N I   +     A      E  
Sbjct: 432 ---------------------DLWTRAED-DLAAALTENGIPFDYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  +SA++ G +       M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D 
Sbjct: 520 RFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---DYVQQVTKKLQDAGIRAKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611


>gi|118575566|ref|YP_875309.1| prolyl-tRNA synthetase [Cenarchaeum symbiosum A]
 gi|152016594|sp|A0RUI8|SYP_CENSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118194087|gb|ABK77005.1| prolyl-tRNA synthetase [Cenarchaeum symbiosum A]
          Length = 476

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 5/170 (2%)

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           ++ +  E+     R +++G   + G  +S P    F   D  +H+    S+G+ + R++ 
Sbjct: 209 VYTTTMESMMPDGRALQMGTSHFLGQNFSRPFEVKFADKDNVEHFAWQTSWGL-SWRLIG 267

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGCDVFWDD 383
           A+I    D KG++ P  VAP ++ +I I    +       A E + A L K G     D 
Sbjct: 268 AMIMVHGDDKGLVLPPKVAPLQVVIIPISYSGEEGAQVLAAAEGMEAELLKAGIRARTDK 327

Query: 384 MGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             E   G +F   ++ G P+++ +G + + D    +  R  G +  + L+
Sbjct: 328 REELTPGFKFHDWEMRGVPVRIEIGPRDLKDGSAVLATRHDGKKSKVPLD 377


>gi|152975545|ref|YP_001375062.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024297|gb|ABS22067.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 640

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + +   +RE Q      E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEGFLREIQQAYDYQEVRTPLMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D Y K+ +  ++ + K+    P +      IF+  ++SYR+LP    +     R E    
Sbjct: 314 DHY-KDNMYFSEVDHKSFALKPMNCPGHMLIFKHKLRSYRDLPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSF 163
             G++R R F   DA+ +
Sbjct: 373 LNGLLRVRTFCQDDAHIY 390


>gi|124267077|ref|YP_001021081.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
 gi|166225459|sp|A2SH07|SYT_METPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124259852|gb|ABM94846.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
          Length = 635

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 11/162 (6%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +H+ G+  W P G      V   +R     
Sbjct: 231 YLHMLEE----AEKRDHRKLGRELDLFHLDEHAPGLVFWHPKGWTVWQQVEQYMRAVYRD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G +E+  P +    LW ++G +D Y + M +  +++ D A+   P +      I++  I
Sbjct: 287 NGYLEVKGPQILDQGLWEKTGHWDKYRENMFVTESEKRDYAL--KPMNCPGHILIYKQGI 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP  + +     R+E      G+MR R F   D + F
Sbjct: 345 KSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIF 386


>gi|122891384|emb|CAM13348.1| novel prtoein similar to vertebrate threonyl-tRNA synthetase (TARS,
           zgc:92586) [Danio rerio]
          Length = 718

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 160/420 (38%), Gaps = 67/420 (15%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IR E  + G  E+  P + ++ LW  SG +  Y + 
Sbjct: 331 HDLSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVTPNIYNSKLWQTSGHWQHYSEN 390

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 391 MFSF-EVEKEIFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTR 449

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-------RLGLKSIPMRAESGPIGG 204
            R F   DA+ F         S  K  + +LR  +       +L L + P +    P   
Sbjct: 450 VRRFQQDDAHIF--CSMDQIESEIKGCLDFLRTVYDVFGFTFKLNLSTRPEKFLGEP--- 504

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAA 258
                   + D  E Q+             EN       SLN   E+W       A Y  
Sbjct: 505 -------EVWDQAEKQL-------------EN-------SLNDFGEKWVLNPGDGAFYGP 537

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGS 316
             D+   ++ D++    + +   ++    F    +++L    TF   DG D    V +  
Sbjct: 538 KIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TFVSHDGDDKKRPVIIHR 586

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G++  + A++  ++ GK   WP  ++P ++ ++ I      C +  +++     KVG
Sbjct: 587 AILGSVERMIAILTENYGGK---WPLWLSPRQVMVVPIGP---TCDEYAQRVQKEFHKVG 640

Query: 377 CDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                D D G  +  +   A L  +   ++VG K  S   V ++ R   +  + SL + +
Sbjct: 641 LMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSDTVNVRTRDNKVHGERSLTDCM 700


>gi|292655033|ref|YP_003534930.1| prolyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291371489|gb|ADE03716.1| prolyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 488

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 125/338 (36%), Gaps = 63/338 (18%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++       ++S+R+LP    Q     R E        R++EFL ++ ++   T 
Sbjct: 115 PTSESIIAPYMAQWVRSHRDLPLRVNQWASVVRWEATETKPFFRTKEFLWQEGHTAHETR 174

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +G+          Y  ++    + +IP+   + P      H+    ADT  T        
Sbjct: 175 DGAWDETMTRLSQYQSLYE--DVLAIPVLRGAKP-----EHDKFPGADTTTT-------- 219

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                         + +L                         +P+ K V A     G  
Sbjct: 220 --------------VEAL-------------------------MPDGKSVQA-----GTS 235

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            Y GT ++     T+   D  +      S+G+ + R + A+I +  D +G++ P ++AP 
Sbjct: 236 HYLGTSFAEAFDLTYTTEDEDEEPAHTTSWGL-SWRSLGALIMTHSDDQGLVLPPTIAPE 294

Query: 348 KISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQV 404
           ++ ++ I   D  +   D  + I   L   G  V  D   E+  G +F   +L G P++ 
Sbjct: 295 QVVIVPIWQADTQEKVLDYAKDIAEDLEDAGVRVELDARDERNPGFKFNEWELKGVPVRF 354

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G   V D  V   HR  G   ++  E +      +F
Sbjct: 355 EIGPNEVDDDVVTAVHRPDGDSVELDRENIAEAVQAQF 392


>gi|302035784|ref|YP_003796106.1| threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300603848|emb|CBK40180.1| Threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 651

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 145/401 (36%), Gaps = 37/401 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    RE+  + G   +  P +   DLW  SG  D Y + M    
Sbjct: 266 GLVLWHPKGSLIRLLIENFWREQHIKDGYDLVYSPHVARLDLWKTSGHVDYYRENMFASM 325

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
                     P +      I++SH++SYR+LP  + ++   +R E      G++R R F 
Sbjct: 326 KLEGSEYQLKPMNCPFHIMIYKSHMRSYRDLPIRYGELGTVYRYERTGVLHGLLRVRGFT 385

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F   P+  +   +++      +    G     +   + P     S E   +A  
Sbjct: 386 QDDAHLF-CRPDQIEAEVSRVLDFTFFVLGTFGFTEFEVYLSTRPDKSVGSEENWTIATN 444

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                  S+       P E   +   I +                    K+ D L  + +
Sbjct: 445 ALEAALKSRGVAYEVDPGEGVFYGPKIDI--------------------KIKDVLGRSWQ 484

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDG 335
            S   ++  +   F   Y+        G DGK H  + +    +G++     ++   + G
Sbjct: 485 CSTVQVDFNNPERFKLAYT--------GEDGKAHQPIMIHRALMGSIERFFGILIEHYAG 536

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
               +P  +AP +  ++ I  + Q   +   KI + L   G  V  D   E+IG +   A
Sbjct: 537 A---FPTWLAPVQAVVLTITDNQQ---EFAAKIVSTLKSHGFRVEADLRNEKIGFKIREA 590

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +    P  ++VG K V    V ++ R       M +E  + 
Sbjct: 591 EKNKIPYMLVVGDKEVQSGMVAVRGRSGANHGSMPIEAFLE 631


>gi|227524682|ref|ZP_03954731.1| threonine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088166|gb|EEI23478.1| threonine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 658

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/386 (20%), Positives = 150/386 (38%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+ +SG ++ Y ++M    
Sbjct: 274 GLPYWMPNGATIRRTIERYIVDKEVANGYEHVYTPVLANLDLYKQSGHWEHYREDMFPPM 333

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D + +   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 334 DMGDGEELELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 393

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  +  +    + ++H   +     R         LS+      D
Sbjct: 394 TLNDGHTF-VALDQIQEEFQNILKLMVEVYHDFDINDYTFR---------LSYR-----D 438

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+ +  E   A Y    DV  +    +L   
Sbjct: 439 PENTEKYFDDDEMWNRAQSMLKGAMDELGLDYVEAEGEAAFYGPKLDVQTKT---ALGNE 495

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + G DGK H   M   G +  M    A +   +
Sbjct: 496 ETLSTIQLD----FMLPERFDL----HYVGEDGKQHRPVMIHRGLVSTMERFVAYLTEIY 547

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +        D  ++I  +L ++      D   E++G    
Sbjct: 548 KGAFPTW---LAPHQVKIIPVSQDKH--GDYAKQINDQLRRLKIRSSVDTRAEKMGYLIR 602

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  ++VG + V+   V ++
Sbjct: 603 DAQTHKIPYTLVVGDEEVNGKSVSVR 628


>gi|227513539|ref|ZP_03943588.1| threonine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083412|gb|EEI18724.1| threonine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 658

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/386 (20%), Positives = 150/386 (38%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+ +SG ++ Y ++M    
Sbjct: 274 GLPYWMPNGATIRRTIERYIVDKEVANGYEHVYTPVLANLDLYKQSGHWEHYREDMFPPM 333

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D + +   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 334 DMGDGEELELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 393

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  +  +    + ++H   +     R         LS+      D
Sbjct: 394 TLNDGHTF-VALDQIQEEFQNILKLMVEVYHDFDINDYTFR---------LSYR-----D 438

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+ +  E   A Y    DV  +    +L   
Sbjct: 439 PENTEKYFDDDEMWNRAQSMLKGAMDELGLDYVEAEGEAAFYGPKLDVQTKT---ALGNE 495

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + G DGK H   M   G +  M    A +   +
Sbjct: 496 ETLSTIQLD----FMLPERFDL----HYVGEDGKQHRPVMIHRGLVSTMERFVAYLTEIY 547

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +        D  ++I  +L ++      D   E++G    
Sbjct: 548 KGAFPTW---LAPHQVKIIPVSQDKH--GDYAKQINDQLRRLKIRSSVDTRAEKMGYLIR 602

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  ++VG + V+   V ++
Sbjct: 603 DAQTHKIPYTLVVGDEEVNGKSVSVR 628


>gi|149235762|ref|XP_001523759.1| hypothetical protein LELG_05175 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452738|gb|EDK46994.1| hypothetical protein LELG_05175 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 688

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 130/336 (38%), Gaps = 72/336 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  L  
Sbjct: 291 PTSETVMYPYYAKWIRSHRDLPIKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLYK 350

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y  I+    L ++P                +V     E + F   D+
Sbjct: 351 KEAEEEVLQILDYYAAIYEE--LLAVP----------------VVKGKKTENEKFAGGDY 392

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                    T  +  I                                  + RGI+ G  
Sbjct: 393 --------TTTVEGFIP--------------------------------ATGRGIQGGTS 412

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +  +G +    +    S+G+ + RV+  ++ +  D KG++ P  V
Sbjct: 413 HHLGQNFSKMFNMSVESPEGPEKGRLFAYQNSWGL-STRVIGVMVMTHSDNKGLVLPPRV 471

Query: 345 APFKISLINI--------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           A  ++ +I +        +  +Q+ + A + I +RL K G  V  D       G +FA  
Sbjct: 472 AQTQVVVIPVGITAKTSAEQREQINKGAAD-IESRLKKAGIRVTGDYRDSYNPGWKFADW 530

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +L G PL+V  G K +   +V    R  G + ++ L
Sbjct: 531 ELKGVPLRVEFGPKDLESEQVTAVRRNDGQKLNVKL 566


>gi|67471890|ref|XP_651857.1| prolyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56468636|gb|EAL46467.1| prolyl-tRNA synthetase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 536

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 128/334 (38%), Gaps = 65/334 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   F++ I  +R+LP    Q     R E    +  +R+REFL ++ ++   T 
Sbjct: 143 PTSETIIYPAFKNWISGHRDLPIKVNQWCNVVRWEFSHPYPFIRTREFLWQEGHTAFATQ 202

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++   +++   Y  ++    L ++P+      I G  S         GET        
Sbjct: 203 AEAEKECHEILELYASVYE--DLLAVPV------IRGKKSK--------GET-------- 238

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             FP    +   + II  N                                 R ++ G  
Sbjct: 239 --FPGAYYSLTVECIIPTN--------------------------------GRSVQAGTS 264

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  +S      F+  D K   V   S+G+ + R +   I +  D KGII P   A  
Sbjct: 265 HHLGQTFSKLFQIEFEDEDNKKQLVWQNSWGL-STRSIGVTIMTHGDNKGIIVPPRAAQK 323

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKV----GCDVFWD-DMGEQIGSQFAVADLLGFPL 402
           ++ +I +  H     D  +     L++V    G   F D +   + G +F+  ++ G P+
Sbjct: 324 QVVIITLH-HKGSPNDEMDAKAEELTQVLIDNGIRAFADTNEMHKPGWKFSEYEMRGIPI 382

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++ +G +     KV I  R  G + + S E++I 
Sbjct: 383 RIELGPRDYEGKKVVIVRRDNGAKSESSWEDLIT 416


>gi|315453307|ref|YP_004073577.1| threonyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132359|emb|CBY82987.1| threonyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 612

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 159/413 (38%), Gaps = 47/413 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++     R+G   +  P +  + LW  SG Y++Y KE +   
Sbjct: 238 GLPIWLPNGMRLRKRIEDLLSVALLRSGYEPVRGPEILKSSLWKISGHYENY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      +++  ++SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEVEYGIKPMNCVGHIKVYQHALRSYRDLPLRFYEYGVVHRHEQSGVLHGLLRVREFT 356

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F       +    K  V  +  F +  +         G  G D   E      T
Sbjct: 357 QDDAHIF------CRFDQIKAEVQAILAFTKRVM---------GAFGFDYEMEL----ST 397

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
             T+   S +  +    +     ++      + E   A Y    D+   K+ D++    +
Sbjct: 398 KPTKYIGSDEVWEQATSALKEALEEQGVPFKVDEGGGAFYGPKIDI---KITDAIRRKWQ 454

Query: 277 VSARGIEVG-----HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                +++      H+ Y   + S  M           H   +GS+     R +A + E 
Sbjct: 455 CGTVQVDMNLPARFHLSYASEQDSPEMPVMI-------HRAILGSF----ERFIAVLTE- 502

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            H G    +P  +AP +++L+ I A DQ   D  + +  +L   G      +  E +  +
Sbjct: 503 -HYGGN--FPFFIAPVQVALVPISA-DQ--HDYAQDLCTQLRHAGIFAEVANKNESLAKR 556

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               +    PL  ++G+K   ++ + I+ R  G +  M  +E IN    +   
Sbjct: 557 IRTLEKQKVPLIAVIGAKETQENALAIRDRALGEQYTMDSKEFINMCQEKMQE 609


>gi|227510530|ref|ZP_03940579.1| threonine--tRNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190182|gb|EEI70249.1| threonine--tRNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 658

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/386 (20%), Positives = 150/386 (38%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + DL+ +SG ++ Y ++M    
Sbjct: 274 GLPYWMPNGATIRRTIERYIVDKEVANGYEHVYTPVLANLDLYKQSGHWEHYREDMFPPM 333

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D + +   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 334 DMGDGEELELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 393

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  +  +    + ++H   +     R         LS+      D
Sbjct: 394 TLNDGHTF-VALDQIQEEFQNILKLMVEVYHDFDINDYTFR---------LSYR-----D 438

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ +   D M     S      D + L+ +  E   A Y    DV  +    +L   
Sbjct: 439 PENTEKYFDDDEMWNRAQSMLKGAMDELGLDYVEAEGEAAFYGPKLDVQTKT---ALGNE 495

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    ++ L     + G DGK H   M   G +  M    A +   +
Sbjct: 496 ETLSTIQLD----FMLPERFDL----HYVGEDGKQHRPVMIHRGLVSTMERFVAYLTEIY 547

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++ +I +        D  ++I  +L ++      D   E++G    
Sbjct: 548 KGAFPTW---LAPHQVKIIPVSQDKH--GDYAKQINDQLRRLKIRSSVDTRAEKMGYLIR 602

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            A     P  ++VG + V+   V ++
Sbjct: 603 DAQTHKIPYTLVVGDEEVNGKSVSVR 628


>gi|218282135|ref|ZP_03488434.1| hypothetical protein EUBIFOR_01014 [Eubacterium biforme DSM 3989]
 gi|218216861|gb|EEC90399.1| hypothetical protein EUBIFOR_01014 [Eubacterium biforme DSM 3989]
          Length = 587

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 167/427 (39%), Gaps = 67/427 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  +LP G    + +     +E  + G   +  P + S +LW  SG +D Y K
Sbjct: 202 ISEFAPGMPIFLPDGMILRNILEQYWYQEHTKEGYQFIKTPIMMSKELWELSGHWDHY-K 260

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           + +  +  +D+     P +      ++ S + SY++LP    ++    R E      G+ 
Sbjct: 261 DNMYTSMVDDREFAIKPMNCPGALLVYNSTLHSYKDLPLRLGELGQVHRHEASGALNGLF 320

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLS 207
           R R F   DA+ F +TP+  +    K+     RI+   GL     +  R ESG IG   S
Sbjct: 321 RVRTFTQDDAHLF-VTPDQLEEEVKKVLQLVDRIYSVFGLPYEIELSTRPESGYIG---S 376

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   +++    Q  C     ++ +   +  F                Y    D+H   +
Sbjct: 377 EEIWDVSEKALAQA-CVHAGKEYKVNPGDGAF----------------YGPKLDIH---I 416

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKD------HYVQMGS 316
            DSL             G ++  GT     +LP      +  ADG        H V  GS
Sbjct: 417 KDSL-------------GRVWQCGTVQLDMNLPERFECKYVDADGTKKTPIMLHRVVYGS 463

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
                 R +  +IE      G  +P  +AP +  +I +     V  +   K+   L+ +G
Sbjct: 464 ----VERFIGILIEHF----GGHFPLWLAPRQFVVIPVHHEKHV--EYANKVCDALTALG 513

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D   E++G +   A L     Q++VG     ++ V I  R +G ++ ++L   +N
Sbjct: 514 MRATVDSRNEKLGYRVREAQLQKVTYQIVVGDGEQENNTVTI--RQSGKKDSVTLS--LN 569

Query: 437 YASHRFS 443
            A  +F 
Sbjct: 570 EALAKFK 576


>gi|320580027|gb|EFW94250.1| Threonyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 714

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   WLP G +  + +  ++R +  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 323 FFHEMSPGSCFWLPHGARIYNGLCELLRTQYRKRGYEEVITPNMYNSKLWETSGHWANYK 382

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       D   +  P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 383 ENMFTFEVEKDTFGL-KPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 441

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 442 TRVRRFQQDDAHIF 455


>gi|291518260|emb|CBK73481.1| prolyl-tRNA synthetase, family I [Butyrivibrio fibrisolvens 16/4]
          Length = 479

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  +S P    +   + +  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGQNFSKPFGIQYTDKNNQLQYVHQTSWGM-TTRLIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ +I I+   +   +   ++  +L K       DD  +  G +F+ A++ 
Sbjct: 284 VLPPRIAPTQVVVIPIQQKKEGVLEKAGEVCEKLGKT-MRAKLDDSDKSPGWKFSEAEMR 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K +   K  +  R T  + +  L++V
Sbjct: 343 GIPVRVELGPKDIEAGKCVLVRRDTREKIECPLDQV 378


>gi|256844949|ref|ZP_05550407.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256718508|gb|EEU32063.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 637

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/428 (20%), Positives = 175/428 (40%), Gaps = 56/428 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R K  L +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R+
Sbjct: 226 RLKKHLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIIRNVLIDLWRK 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G +++  P + + +LW  SG + +Y +E +  ++ ++      P +       F+
Sbjct: 282 EHEKAGYLQLETPIMLNKELWEISGHWFNY-RENMYTSEIDELEFAIKPMNCPGGVLSFK 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +       
Sbjct: 341 HQLHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEI---- 395

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    +G+ ++  +  S   G     E+ +   T   +   S++  D    +    
Sbjct: 396 ---------IGVVNLIDKFYSKLFG----FEYEIELSTKPEKAIGSQEIWDMAEAALAGA 442

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
            D +     I     A Y    D    K+ D+             +G ++  GT    ++
Sbjct: 443 LDKLGRKYKINPGDGAFYGPKLDF---KIKDA-------------IGRMWQCGTIQLDFN 486

Query: 296 LP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP     T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++
Sbjct: 487 LPERFDVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFSMW---LAPVQVKVL 543

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFV 411
            +   +  C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V
Sbjct: 544 TL---NDECIPYAKEIMDKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEV 600

Query: 412 SDSKVEIK 419
            + +V I+
Sbjct: 601 ENKEVNIR 608


>gi|218563696|ref|NP_001116258.1| threonyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio]
 gi|158253608|gb|AAI54372.1| Zgc:92586 protein [Danio rerio]
          Length = 718

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 160/420 (38%), Gaps = 67/420 (15%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IR E  + G  E+  P + ++ LW  SG +  Y + 
Sbjct: 331 HDLSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVTPNIYNSKLWQTSGHWQHYSEN 390

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 391 MFSF-EVEKEIFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTR 449

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-------RLGLKSIPMRAESGPIGG 204
            R F   DA+ F         S  K  + +LR  +       +L L + P +    P   
Sbjct: 450 VRRFQQDDAHIF--CSMDQIESEIKGCLDFLRTVYDVFGFTFKLNLSTRPEKFLGEP--- 504

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAA 258
                   + D  E Q+             EN       SLN   E+W       A Y  
Sbjct: 505 -------EVWDQAEKQL-------------EN-------SLNDFGEKWVLNPGDGAFYGP 537

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGS 316
             D+   ++ D++    + +   ++    F    +++L    TF   DG D    V +  
Sbjct: 538 KIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TFVSHDGDDKKRPVIIHR 586

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G++  + A++  ++ GK   WP  ++P ++ ++ I      C +  +++     KVG
Sbjct: 587 AILGSVERMIAILTENYGGK---WPLWLSPRQVMVVPIGP---TCDEYAQRVQKEFHKVG 640

Query: 377 CDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                D D G  +  +   A L  +   ++VG K  S   V ++ R   +  + SL + +
Sbjct: 641 LMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSDTVNVRTRDNKVHGERSLTDCM 700


>gi|220931402|ref|YP_002508310.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|219992712|gb|ACL69315.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 646

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RND 101
           P G K +  +   + +E+ + G      P +  +DL+  SG +D Y ++M  L D  ++D
Sbjct: 269 PKGAKVVQILQRFVEDEEEKRGYQLTKTPYMAKSDLYKISGHWDHYKEDMFILGDEEKDD 328

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           + +   P        I+ S ++SYR+LP  + +    FR+E      G++R R+F + + 
Sbjct: 329 EVLALRPMTCPFQFMIYNSKLRSYRDLPLRYSETSTLFRNEASGEMHGLIRVRQFTISEG 388

Query: 161 YSFDLTPE 168
           +    TPE
Sbjct: 389 HII-CTPE 395



 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H   +G Y     R +A +IE         +P  +AP ++ +I + + DQV  D   ++ 
Sbjct: 520 HRTSVGCYE----RTLAMLIEKYAGA----FPTWLAPVQVEIIPV-SDDQV--DYAYEVK 568

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G  V  DD  E++G +   A +   P  +IVG++ V +  V ++ R  G    +
Sbjct: 569 GILKEAGIRVEVDDTNEKLGYKIRQAQMEKIPYMLIVGNREVENRTVSVRDRKEGDLGAI 628

Query: 430 SLEE 433
           S++E
Sbjct: 629 SIKE 632


>gi|291537165|emb|CBL10277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Roseburia
           intestinalis M50/1]
          Length = 494

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  +LP G      +   I+ ++ + G + +  P + + +L+  SG +D Y + M  
Sbjct: 200 GRGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPCVGTVNLYKTSGHWDHYKENMFP 259

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             +   ++ +  P +      I+ + + SY++LP    +I   FR E      G+ R R 
Sbjct: 260 AMEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIGEIAHDFRFEASGTLKGIERGRH 319

Query: 155 FLMKDAYSFDLTPEGSKHSYNKM 177
           F   DA+ F +TPE  +  + K+
Sbjct: 320 FCQNDAHLF-VTPEQIESEFAKV 341


>gi|219113513|ref|XP_002186340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583190|gb|ACI65810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 766

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 5/163 (3%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L + +EN   A+   H+ +       M H  S G   WLP G +  + +   I+   
Sbjct: 351 KKMLKVWKENQEKAKERDHRRIAAKQDLIMFHDLSAGSAFWLPHGARIYNKLIDFIKSHY 410

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + + DLW +SG    Y K+ +   D   +     P +      +F + 
Sbjct: 411 WNRGYDEIITPNIYNLDLWHKSGHALHY-KDAMFCFDVEGQEWAMKPMNCPGHCLMFANS 469

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           I+SYR+LP  F    +  R+EL     G+ R R F   DA+ +
Sbjct: 470 IRSYRDLPLRFADFGVLHRNELSGALTGLTRVRRFQQDDAHIY 512


>gi|325282970|ref|YP_004255511.1| Prolyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314779|gb|ADY25894.1| Prolyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 505

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/340 (19%), Positives = 133/340 (39%), Gaps = 68/340 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++  ++   + SYR+LPF   Q    FR EL       R++ FL    + +    
Sbjct: 131 PTSETIIGHMWSGWLNSYRDLPFLHNQWGSVFRAEL-------RTKPFLRTSEFFWQ--- 180

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           EG                H         RAE             V     E   FC    
Sbjct: 181 EG----------------HTAHASEAEARAE-------------VRQQLDEYHSFCR--- 208

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAP--YAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                        D+++L  +  + TA   +A   + ++        E      + ++ G
Sbjct: 209 -------------DVLALPVVRGEKTASERFAGAENTYS-------IEGMMRDGKALQSG 248

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              Y G  +S      F+ A+ ++ +    S+G+ + R++ A+I +  D  G++ P ++A
Sbjct: 249 TSHYLGQNFSRAFEVKFQTAEQREEFAYTTSWGLSS-RIIGALIMTHGDDFGLMLPPNIA 307

Query: 346 PFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPL 402
           P ++ ++ +   +   R  +    + A L + G  V  DD  G   G ++   +L G P+
Sbjct: 308 PIQVVIVPVGRKEDFARMVEEARTLAAELEREGIRVKVDDREGLTNGFKYNDWELKGVPV 367

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++ +G + +   ++ +K+R +  +E +   + ++    R 
Sbjct: 368 RIELGPRDLEAGQLVVKNRTSEDKETLGRVDAVSSMDARL 407


>gi|260585028|ref|ZP_05852770.1| proline--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260157224|gb|EEW92298.1| proline--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 482

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++      +   + +  +    S+G+ + R++ ++I +  D +G+
Sbjct: 219 GKAVQAGTSHYMGTKFAEAFDIKYLTKENEHVHAHTTSWGV-STRLIGSLIMTHGDEQGL 277

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  VAP ++ LI +     +    +  E++  +L   G  V  DD     G +F   +
Sbjct: 278 VLPPKVAPTQVVLIPVGPWKKNPAILEKLEELQQQLKAAGLRVKIDDTDNSPGFKFNEWE 337

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L G P+++  G + + +++V  K R
Sbjct: 338 LRGVPMRIECGPRDLENNQVMTKMR 362


>gi|157145991|ref|YP_001453310.1| threonyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|157083196|gb|ABV12874.1| hypothetical protein CKO_01745 [Citrobacter koseri ATCC BAA-895]
          Length = 622

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 153/411 (37%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 412 ----EMWDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  ++A++ G + +     M    I G+M  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPSRLNASYVGENNERQVPVMIHRAILGSMER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWLAPVQVVVMNIT---DTQSEYVNELTQKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       + + EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVI 605


>gi|14590578|ref|NP_142646.1| threonyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|8928366|sp|O58430|SYT_PYRHO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3257107|dbj|BAA29790.1| 625aa long hypothetical threonyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 625

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 50/332 (15%)

Query: 117 IFRSHIKSYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           I +  + SYR+LP   Y++ +  FR E R    G+ R R F M D ++     E +K  +
Sbjct: 304 ISKDAVISYRHLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDLEQAKDEF 363

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            K F   + +   +GL                        +  E  +  ++DF       
Sbjct: 364 KKQFKLSMEVLKGVGL----------------------TPEDYEVAIRFTEDFW-----K 396

Query: 235 ENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           EN DF      II    ++E W   +            D+L +   +S   I+V +   F
Sbjct: 397 ENRDFIVELVKIIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERF 456

Query: 291 GTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESS----HDGKGIIWPDSV 344
           G KY           +G++ Y + +     GA+ RV+ A++E       +GK  + P  +
Sbjct: 457 GIKYY--------DENGEEKYPLILHCSPSGAIERVMYAILEKQAKLMQEGKKPMLPLWL 508

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ +I +    +   D    I  +L      V  DD  E++  +   A+    P  V
Sbjct: 509 SPIQVRVIPV---SEEYLDYALYIAGKLEGARIRVDVDDEDERLNKKIRRAEKEWIPYIV 565

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +VG+K      + ++ R  G + +  LEE+I 
Sbjct: 566 VVGAKEKESGTITVRRREDGKQYETRLEELIK 597


>gi|104774352|ref|YP_619332.1| threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423433|emb|CAI98306.1| Threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 643

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 162/413 (39%), Gaps = 39/413 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  +  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + +     + ++H   +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQVQEEFARTLQIIMDVYHDFDINDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ GADG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFEL----SYIGADGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N+ AH     D  +K+   L   G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNLDAH----SDYAKKVRDELVAKGFRAEIDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +     P  +++G   ++   V ++   T  +   SL E +   S   +N
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLAEFMGKLSKDVAN 638


>gi|322502963|emb|CBZ38047.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 788

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +   +R++  R G  E+  P + S+ LW+ SG ++ Y  
Sbjct: 301 FHEVSPGSAFWLPHGTRIYNTLVEFLRKKYRRCGFQEVISPNMYSSKLWMVSGHWEKYAD 360

Query: 92  EML-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     ++ D  +   P +      +F S   SY+ LP  +    +  R+EL     G+
Sbjct: 361 NMFCTKCEKEDFGL--KPMNCPGHCIMFASQPHSYKELPIRYADFGVLHRNELSGALTGL 418

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 419 TRVRRFQQDDAHIF 432


>gi|300863511|ref|ZP_07108463.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300338467|emb|CBN53605.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 608

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M  + 
Sbjct: 222 GLPLWTPKGTILRSILEDFLKQEQVKRGYLPVVTPHIGRVDLFKTSGHWQKYKEDMFPMM 281

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
                + + ++  +  P +      I++S ++SYR LP    +    +R E      G+ 
Sbjct: 282 AEDEESAKAEQGFVLKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGELGGLT 341

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F + D++ F +TPE     +  +    L +F  L LK+   R
Sbjct: 342 RVRGFTVDDSHLF-VTPEQLDAEFLSVVDLILSVFKSLQLKNFKAR 386


>gi|260434317|ref|ZP_05788287.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412191|gb|EEX05487.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 611

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 150/393 (38%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEEFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYAESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
           + +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 EVDEREYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       K+     RI       +  +   + P   IG D   +   
Sbjct: 348 TQDDAHVFCL-PEQISDEILKILDLTERILSSFDFSNYEINLSTRPEKSIGDDTVWD--- 403

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +    K +                    I E   A Y    D+   K+ D++ 
Sbjct: 404 LATKGLIEALDRKGWA-----------------YKIDEGGGAFYGPKIDL---KIEDAIG 443

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++    F    ++ L     +  ADG      M    I G++     ++  
Sbjct: 444 RMWQCSTIQLD----FNLPERFDL----DYVAADGSKQRPIMIHRAIFGSLERFFGIMTE 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP ++ L+ +   D+V +   E++  +L+K G     D  G+++G  
Sbjct: 496 NYAGDYPFW---LAPEQVRLLPVT--DEV-QPYAEQVLDQLTKAGVRATIDRSGDRLGKL 549

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               + +  P+  ++G+K    + V ++ R  G
Sbjct: 550 IRTGEQIKIPVLAVIGAKEAEQNAVSLRSRRDG 582


>gi|21672408|ref|NP_660475.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|22654285|sp|P46244|SYT_BUCAP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21623017|gb|AAM67686.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 642

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 3/177 (1%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           +L    + + S G+  W   G    + +   +RE+       E+  P L    +W +SG 
Sbjct: 250 LLNLYHMQKESPGMIFWHNNGWIIFNELEIFVREKLKEYKYKEVKTPLLIDKSIWQKSGH 309

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +D+Y   +   +  N +  I  P +      IF   +KSYR+LP    +     R+E   
Sbjct: 310 WDNYQDAIFTTSSENREYCI-KPMNCPGHVQIFNCGLKSYRDLPIRMAEFGSCHRNESSG 368

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
              G+MR R F   DA+ F  T E  ++  N        ++     K I ++  + P
Sbjct: 369 SLHGLMRIRNFTQDDAHIF-CTQEQLRYEINNCIKMIYDLYSTFNFKKILVKFSTRP 424


>gi|306820889|ref|ZP_07454509.1| threonine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551003|gb|EFM38974.1| threonine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 641

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 7   FLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    A++  H+ +   L    +H+   G   + P G    + +    REE  +
Sbjct: 231 YLKLLEE----AKLRDHRKLGKELDLFSMHEEGPGFPFFHPKGMVLRNTLEKFWREEHEK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+  P + +  LW +SG +D Y + M     D  D A+        ++T  +++H+
Sbjct: 287 AGYDEIKTPIILNEALWHQSGHWDHYKENMYFTKIDGEDYAIKPMNCPGSILT--YKTHL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDL 165
            SYR+LP  + ++    R EL     G+MR R F   DA+ + L
Sbjct: 345 FSYRDLPLRWAEMGQVHRHELSGALHGLMRVRTFTQDDAHLYVL 388



 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++     ++     GK  +W   ++P ++ ++ I   D+   D   ++ + L K+G  V
Sbjct: 514 GSIERFIGILIEHFAGKFPLW---LSPVQVKILPIS--DKFI-DYAYEVQSELKKLGIRV 567

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   E+IG +   A L   P  +++G K V ++ + ++ R  G    M  EEVI
Sbjct: 568 NVDARAEKIGFKIREAQLEKVPYMLVIGEKEVENNTLSVRSRDLGDLGSMKKEEVI 623


>gi|290969075|ref|ZP_06560610.1| threonine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781031|gb|EFD93624.1| threonine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 635

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 148/381 (38%), Gaps = 59/381 (15%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  PT+ +  LW +SG +D Y ++ +     +++     P +      +++S + SYR+
Sbjct: 291 EIMTPTILNRQLWEQSGHWDHY-RDNMYFTTIDEQPYAIKPMNCPGGILVYKSSVHSYRD 349

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            P    ++ L  R EL     G+ R R F   DA+ F + P   K   + +   + + + 
Sbjct: 350 FPIRAAELGLVHRHELHGALHGLFRVRCFTQDDAHIF-MLPSQMKDEISGVMDLFDKAYK 408

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII--- 243
           + GL                  E+ V   T                P ++   D+I    
Sbjct: 409 QFGL------------------EYHVELSTR---------------PEDSMGSDEIWESA 435

Query: 244 --SLNSIVEQWTAPYAATSD---VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
             +L+ ++E+   PY         +  KL   L   K    R  + G I        +P 
Sbjct: 436 TKTLHEVIEEKQVPYVINEGDGAFYGPKLDFHL---KDCLGRTWQCGTI---QLDMLMPE 489

Query: 298 -MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG+ H  V +     G++     +I  ++ G   +W   +AP +I  + I 
Sbjct: 490 RFDVTYIGEDGQKHRPVMVHRACFGSIERFLGIITENYAGAFPVW---LAPVQIKFLPI- 545

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +  Q+     E    R  K G  V  D   E+IG +   A +   P   IVG K ++   
Sbjct: 546 SDKQLAY--AEDTARRFKKAGLRVEVDTSSEKIGYKIRKAQMEKVPYMAIVGDKEMAAGT 603

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           + ++ R  G     + EEV++
Sbjct: 604 ISVRERTQGDIGVKAAEEVLH 624


>gi|218295277|ref|ZP_03496113.1| prolyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218244480|gb|EED11005.1| prolyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 477

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/435 (19%), Positives = 177/435 (40%), Gaps = 82/435 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L ++Q+    AE+A +  +  T ++  +   I+  +   QK LD    + +E  ++
Sbjct: 15  SEWYLEVIQK----AELADYGPVRGTIVLRPYGYAIWENI---QKTLDQ---MFKETGHQ 64

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFR 119
                + +P    + L  E+   + +  E+  +     +  ++ +   PT E V+  ++ 
Sbjct: 65  NAYFPLFIPM---SFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWS 121

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+SYR+LP    Q     R ELR R   +R+ EFL ++ ++   T E ++    +M  
Sbjct: 122 KWIQSYRDLPQLLNQWGNVVRWELRTR-PFLRTSEFLWQEGHTAHATREEAEAEVRRM-- 178

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L I+ +L                                   ++D+   P+       
Sbjct: 179 --LGIYAKL-----------------------------------ARDYAAIPV------- 194

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I  L +  E++              ++ +  E      + ++ G   Y G  ++    
Sbjct: 195 --IEGLKTEKEKFAG-----------AVYTTTIEAMMRDGKALQSGTSHYLGENFARAFD 241

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAH 357
             F+  D +  YV   S+G+ + R + A++ +  D KG+I P  +AP ++ ++ I  + +
Sbjct: 242 IKFQDRDLQVKYVHTTSWGL-SWRFIGAIVMTHGDDKGLILPPRLAPIQVVIVPIYREEN 300

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +A   +   L   G     DD  +   G +F   +L G P +V +G K +   + 
Sbjct: 301 REKVLEAAFALKKDLLARGLRAHLDDRDQYTPGYKFHEWELKGVPYRVELGPKDLEVGQA 360

Query: 417 EIKHRLTGIREDMSL 431
            +  RL G +E + L
Sbjct: 361 VLASRLGG-KETLPL 374


>gi|322437350|ref|YP_004219562.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321165077|gb|ADW70782.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 687

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/414 (20%), Positives = 156/414 (37%), Gaps = 62/414 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +RE+  + G   +  P +   +LW  SG  ++YG+ M    
Sbjct: 306 GLIFWHPKGGLIRKAMEDWMREDCIKRGYEMVFTPHIMRRELWKISGHEENYGENMYPPM 365

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +D      P +      I+++  KSYR+LP  + ++   +R E      G++R R F 
Sbjct: 366 ELDDAEYRLKPMNCPGHILIYKNSPKSYRDLPVRYAELGNVYRYERSGTMHGLLRVRGFT 425

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  TP                                    G +  E     + 
Sbjct: 426 QDDAHIF-CTP------------------------------------GQIEDEVTACIEF 448

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK--LFDSLPEN 274
            E+ V  +  F +F +     D +D   + S  EQW     +  +    K   + ++P  
Sbjct: 449 AES-VLNTFGFHEFKVELSTWDPNDKKFIGS-AEQWGVAVGSLRNALERKGIPYKTIPGE 506

Query: 275 KRVSARGIEV------GHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAM 322
                  I++      G ++   T    ++LP      +KG DG+ H   M    + G++
Sbjct: 507 AAFYGPKIDIKLVDVLGRMWQLSTVQFDWNLPARFDLHYKGEDGELHQPVMVHRALFGSV 566

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFW 381
                V+   + G    W   +AP ++ L+ I + H +  R     +  RL   G  V  
Sbjct: 567 ERFFGVLIEHYAGAFPFW---LAPVQVGLVPISEKHLEYAR----TVQQRLKDAGVRVEL 619

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  E++ ++     +   P  +I+G K     +V ++ R  G    MS E  +
Sbjct: 620 DERNEKMNAKIREFGVNKVPFILIMGDKESQSDEVSVRTRGKGDGGAMSTEAFV 673


>gi|170721151|ref|YP_001748839.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
 gi|229558042|sp|B1J6U4|SYT_PSEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169759154|gb|ACA72470.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 640

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 3/171 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHANGWTVYQVLEQYMRQVQRENGYSEIKTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           R R F+  DA+ F    +  K + + + ++ L ++   G   + M+  + P
Sbjct: 374 RVRGFVQDDAHIFCTEDQVKKEAADFIKLT-LDVYKDFGFTDVAMKLSTRP 423


>gi|150015183|ref|YP_001307437.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901648|gb|ABR32481.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 643

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 8/182 (4%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL  L+E   RD      +L L T       +G+   +P G K +  +   + +E+ + G
Sbjct: 229 FLEALEEAKKRDHNKLGRELKLFT-TDENVGQGLPLLMPKGAKIVQLLQRWVEDEEEKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M  L D  ++D+     P        I+ +   
Sbjct: 288 YLLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPFQYTIYNAEQH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM--FVS 180
           SYR+LP  + +    FR+E      G++R R+F + D +   +TPE  +  +  +   + 
Sbjct: 348 SYRDLPLRYGETSTLFRNEASGEMHGLIRVRQFTLADGH-LVVTPEQLEEEFKGVLELIQ 406

Query: 181 YL 182
           YL
Sbjct: 407 YL 408


>gi|126174365|ref|YP_001050514.1| threonyl-tRNA synthetase [Shewanella baltica OS155]
 gi|153000743|ref|YP_001366424.1| threonyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217973356|ref|YP_002358107.1| threonyl-tRNA synthetase [Shewanella baltica OS223]
 gi|166225497|sp|A3D4I2|SYT_SHEB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225498|sp|A6WNH2|SYT_SHEB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783536|sp|B8EES6|SYT_SHEB2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125997570|gb|ABN61645.1| threonyl-tRNA synthetase [Shewanella baltica OS155]
 gi|151365361|gb|ABS08361.1| threonyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217498491|gb|ACK46684.1| threonyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 642

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTDSQVQEEVSACIQMVYDTYATFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q     +     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRDNNIEFTILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPSRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  E++     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVEEVVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|326800360|ref|YP_004318179.1| threonyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326551124|gb|ADZ79509.1| threonyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 641

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 20/195 (10%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK----------------GIYSWLPLGQKALDNVNAIIR 58
           P+ +E+A +  M+       H K                G+  WLP G      +   ++
Sbjct: 223 PKASELADYLHMIEEAKKRDHRKLGKELELFAFSERVGMGLPLWLPKGAALRQKLVDFLQ 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTD 116
             Q + G   +  P +   +L+V SG Y+ YG +  +     +  +  +  P +     +
Sbjct: 283 RAQMKAGYEPVVTPHIGHKNLYVTSGHYEKYGADSFQPIRTPQEGEEFLLKPMNCPHHCE 342

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+++  +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + 
Sbjct: 343 IYKTKPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQVKDEFK 401

Query: 176 KMFVSYLRIFHRLGL 190
           K+    L +F  LG 
Sbjct: 402 KVIDLVLYVFKALGF 416


>gi|302389916|ref|YP_003825737.1| histidyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200544|gb|ADL08114.1| histidyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 423

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 166/449 (36%), Gaps = 69/449 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        +  I RE   + G  E+  PT +  +L+        D 
Sbjct: 1   MLTKAPRGTRDLLPEECTKWVFLENIFREICGQFGYREIRTPTFEHTELFQRGIGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM   +D++ +++   P     +   +  H    + +P   + I   FR E RP+ G
Sbjct: 61  VEKEMYTFSDKSGRSITLKPEGTAPVARAYIEHKLYNKPMPVKLFYITPCFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF--HRLGLKSIPMRAESGPIGGDL 206
             R REF     + F +   GS      + V  L +F   RLGL S+ +R  S  IG + 
Sbjct: 120 --RQREF-----HQFGIEAFGSPSPLIDVEVITLAVFFLKRLGLDSLEVRINS--IGCER 170

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI---ISLNSI-VEQWTAPYAATSDV 262
             E               K   DF     N+  D     +  N++ +     P      V
Sbjct: 171 CREDY------------KKALEDFLFEKANSLCDTCKVRLGRNTLRILDCKDPGCQKLLV 218

Query: 263 HNEKLFDSLPENKR---------VSAR--------GIEVGHIFYFGTKYS-----LPMSA 300
               + + L +N R         +SA         GI  G  +Y  T +      L   +
Sbjct: 219 EAPVILEYLCDNCRGHFDEVKKGLSALDVKYSVDPGIVRGLDYYTKTVFEIISKDLGAQS 278

Query: 301 TFKGADGKDHYVQ--------MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           T  G    DH V+           +GIG  R++  +     +  G++    + P ++ + 
Sbjct: 279 TVCGGGRYDHLVEECGGPPTPAAGFGIGIERLIMVL-----EANGLL---DIPPIQMDVF 330

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I   D+  RD   K+  RL   G     D +G  + +Q   AD +      I+G   V 
Sbjct: 331 -IAVLDETYRDYGLKLLYRLRMAGFSAETDYVGRSLKAQMKYADKIPSKYAFIIGEDEVK 389

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +K   TG +E +  EEV  Y  ++
Sbjct: 390 TGIITVKDLTTGEQEKVPCEEVETYLKNK 418


>gi|167465772|ref|ZP_02330861.1| threonine-tRNA ligase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 419

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/397 (18%), Positives = 155/397 (39%), Gaps = 47/397 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I + + + G   +  P L + DL+  SG ++ Y ++M   
Sbjct: 33  QGLPLWLPNGATIRRTLERYIVDLEEKLGYQHVYTPVLANVDLYKTSGHWEHYREDMFPP 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      ++++ + SYR+LP    ++    R E+     G+ R R  
Sbjct: 93  MQLDNEELVLRPMNCPHHMMVYKNELHSYRDLPIRIAELGTMHRYEMSGALTGLHRVRAM 152

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++     +++   G+     R         LS+      D
Sbjct: 153 TLNDAHIF-CRPDQIKEEFARVITLIRQVYADFGITDYRFR---------LSYR-----D 197

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY---AATSDVHNEKL----F 268
             +T  +   D M + +            L  +VE+   PY      +  +  KL     
Sbjct: 198 PQDTDKYFPNDEM-WEMSQR--------MLKEVVEELRLPYYEAEGEAAFYGPKLDVQIK 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
            +L + + +S   ++    F    ++ L     + G DG+ H   +   GI   M  + A
Sbjct: 249 TALKKEETLSTAQLD----FLLPERFEL----EYVGEDGQKHRPVVIHRGIVSTMERMTA 300

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +  +  G    W   + P +  ++ + +      D  +++  RL + G  V  D   E+
Sbjct: 301 FLLENFAGALPTW---LCPVQAKILPVSS---AFNDYAKEMEDRLKQAGIRVAADLRNEK 354

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G +   + L   P  ++VG          ++ R  G
Sbjct: 355 LGYKIRESQLEKVPFMLVVGENEKQSGSFSVRRRGEG 391


>gi|203287850|ref|YP_002222865.1| prolyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|201085070|gb|ACH94644.1| prolyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 491

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 24/193 (12%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   Y G  ++      F+  +G+  YV   S+G+ + R++ A+I    D KG+I
Sbjct: 223 KALQAGTSHYLGLNFAKAFDVKFQNKNGEMSYVFATSWGV-STRLIGALIMVHSDSKGLI 281

Query: 340 WPDSVAPFKISLINI-KAHDQVCRDACE---KIYARLSKVGCDVFWD-DMGEQIGSQFAV 394
            P  +AP +I ++ I K  D V +   E    I+  L K    V  D D     G +FA 
Sbjct: 282 LPPKIAPIEILIVPILKKDDDVNKKILEYATTIFDILVKEKFRVEIDKDFKNSPGFRFAA 341

Query: 395 ADLLGFPLQVIVGSKFV---------------SDSKVEIKHRLTGIREDMSLE--EVINY 437
           ++  G P+++ +GS  +               S  +V  K  L  I+E++     E+ N 
Sbjct: 342 SEFKGIPIRIEIGSNDILMDCVTVARRDRDKNSKYQVSFKELLPKIKEELETMQCELFNK 401

Query: 438 A-SHRFSNNRPVL 449
           A   R SN + ++
Sbjct: 402 ALEFRNSNTKEII 414


>gi|167765976|ref|ZP_02438029.1| hypothetical protein CLOSS21_00467 [Clostridium sp. SS2/1]
 gi|167712333|gb|EDS22912.1| hypothetical protein CLOSS21_00467 [Clostridium sp. SS2/1]
 gi|291558770|emb|CBL37570.1| prolyl-tRNA synthetase, family I [butyrate-producing bacterium
           SSC/2]
          Length = 478

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   D K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFDIQYTDKDNKLQYVHQTSWGM-STRIIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +  ++ I    +   D  E+I  RL      V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPRIAPVQTMIVPIMQKKEGVLDKAEEIRKRLVS-SYKVKVDDSDKSPGWKFSEQEVR 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P ++ +G K +  ++  I  R T  +  +SL+E+
Sbjct: 343 GIPTRIEIGPKDIEKNQAVIVRRDTREKIIVSLDEI 378


>gi|146100812|ref|XP_001468953.1| threonyl-tRNA synthetase [Leishmania infantum]
 gi|134073322|emb|CAM72048.1| putative threonyl-tRNA synthetase [Leishmania infantum JPCM5]
          Length = 788

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +   +R++  R G  E+  P + S+ LW+ SG ++ Y  
Sbjct: 301 FHEVSPGSAFWLPHGARIYNTLVEFLRKKYRRCGFQEVISPNMYSSKLWMVSGHWEKYAD 360

Query: 92  EMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     ++ D  +   P +      +F S   SY+ LP  +    +  R+EL     G+
Sbjct: 361 NMFCTKCEKEDFGL--KPMNCPGHCIMFASQPHSYKELPIRYADFGVLHRNELSGALTGL 418

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 419 TRVRRFQQDDAHIF 432


>gi|268316191|ref|YP_003289910.1| threonyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262333725|gb|ACY47522.1| threonyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 662

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 144/417 (34%), Gaps = 62/417 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G    + +   +REEQ R G   +  P +   +L+  SG Y  Y        
Sbjct: 271 GLPLWLPRGATLRETLINFLREEQIRRGYQPVVTPHIARLELYKTSGHYPYYKDSQFPPM 330

Query: 98  DRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
             N    +  +  P +      I+    +SYR LP    +    +R E      G+ R R
Sbjct: 331 IENPETGEGYLLKPMNCPHHIMIYADRPRSYRELPLRLAEFGQVYRYEQTGELSGLTRVR 390

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F + DA+ F   P+  K  +  +    L +F  LG      +              I L
Sbjct: 391 GFTIDDAHIF-CRPDQVKDEFKNVIDLTLYVFRSLGFDEFEAQ--------------ISL 435

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D    + +   D                       E W     A  +   E    +  E
Sbjct: 436 RDPNNREKYVGDD-----------------------ELWEQAEQAIREAAAEMGLQATEE 472

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               +  G +        +G  +  GT    Y LP      + GAD + H  V +     
Sbjct: 473 LGEAAFYGPKLDFMVRDALGRRWQLGTVQLDYILPERFDLYYIGADNQKHRPVMIHRAPF 532

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++     V+     G   +W   +AP +++++ +        D  E +  RL + G  V
Sbjct: 533 GSLERFIGVLIEHCAGNFPLW---LAPVQVAVLPLSDE---LNDYAEAVGRRLLEAGFRV 586

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             D   E IG +   A++   P  +IVG +      V ++    G +   +L+E I 
Sbjct: 587 EVDTRTETIGYKIRQAEVQKIPYMLIVGRREREAGTVAVRKHGEGDQGPATLDEFIE 643


>gi|219110281|ref|XP_002176892.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411427|gb|EEC51355.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 671

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 129/325 (39%), Gaps = 68/325 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +I  PT E ++  +FR  I S+R+LP    Q     R E+R R   +R+ EFL ++ ++ 
Sbjct: 281 LIVRPTSETMIWYMFRKWIVSHRDLPLKINQWANVMRWEMRTR-PFLRTSEFLWQEGHTA 339

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             T +G+      M  +Y                                         C
Sbjct: 340 HATRDGAIADAQAMLDNY--------------------------------------ATLC 361

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +D +  P+         +  + S  E+    +A   D +     ++L +N       ++
Sbjct: 362 -EDLLAMPV---------VRGVKSPSER----FAGAEDTYT---IEALMQN----GWALQ 400

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G   + G  +    + TF+  +G    V   S+G  + R++ A+I +  D  G++ P  
Sbjct: 401 SGTSHFLGQSFGKAFNVTFQDENGTQQDVWGTSWG-ASTRLIGALIMTHSDDAGLVLPPK 459

Query: 344 VAPFKISLINI--KAHDQVCRDACE----KIYARLSKVGCDVFWDDMG-EQIGSQFAVAD 396
           VAP ++ ++ I  K  D   + A +    ++ A L   G     DD    + G++F   +
Sbjct: 460 VAPAQVIIVPIPPKKDDAETKQAMDIAMNQLTASLKAEGLRFKVDDRDFVRSGAKFFEWE 519

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
             G PL++ +G + V ++    K+R
Sbjct: 520 RKGVPLRIEIGPRDVRNNVCVFKYR 544


>gi|310641589|ref|YP_003946347.1| prolyl-tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309246539|gb|ADO56106.1| Prolyl-tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 482

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT +++     +   +    +    S+G  + R++ A+I    D +G+
Sbjct: 225 GRAVQAGTSHYMGTNFAVAFDIKYLSRENNLEFAHTTSWGT-STRLIGALIMVHGDDRGL 283

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
             P  VAP ++ ++ I   K  D V   A ++++A L + G  V  DD  +   G +F  
Sbjct: 284 ALPPKVAPTQVIMVPIGPPKKRDAVIARA-DELFAELKQAGVRVKMDDRSDVSPGWKFNE 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
            ++ G P+++ +G + + +    +  R++G    +++D  LEEV
Sbjct: 343 YEMRGVPVRLEIGPRDMENGVCVLVSRISGEKKIVQQDNLLEEV 386


>gi|239993779|ref|ZP_04714303.1| threonyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 638

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/423 (21%), Positives = 150/423 (35%), Gaps = 64/423 (15%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      + + +R++    G  E+  P +    LW +SG +D Y + 
Sbjct: 257 QEEAPGMVFWHNDGWSIYTELESYVRKKLREYGYDEVKGPLMMDRSLWEKSGHWDKYAEN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MF-TTESEKREYAVKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  T E      +         +   G ++I ++  + P       E  
Sbjct: 376 VRGFTQDDAHIF-CTEEQILEEVSGCIKMVYETYAAFGFENIKVKLSTRP-------EKR 427

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV--HNEKLFD 269
           V AD                                  E W    AA +D    N+  FD
Sbjct: 428 VGAD----------------------------------EIWDKSEAALADALKANDIEFD 453

Query: 270 SLPENKRVSARGIE------VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYG 318
             P         IE      +   +  GT    +S+P  + +T+   DG+     M    
Sbjct: 454 YQPGEGAFYGPKIEFTLHDCLDRAWQCGTVQLDFSMPGRLGSTYVAEDGERKVPVMIHRA 513

Query: 319 I-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           I G++     ++     G   +W   +AP ++ ++NI          C K   +L ++G 
Sbjct: 514 ILGSLERFIGILTEEFAGFFPLW---LAPQQVVVMNITDKQAEYASDCVK---KLQELGF 567

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D   E+IG +     L   P  ++VG K +   +V ++ R       M LE+ I  
Sbjct: 568 RAKSDLRNEKIGFKIREHTLKRIPYMLVVGDKEMEAGEVAVRSRRGDDLGKMRLEDFIAM 627

Query: 438 ASH 440
           A  
Sbjct: 628 AQQ 630


>gi|188533977|ref|YP_001907774.1| threonyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|238689736|sp|B2VEM1|SYT_ERWT9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188029019|emb|CAO96887.1| Threonyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 642

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 92/442 (20%), Positives = 159/442 (35%), Gaps = 56/442 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L + +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 230 AAYLLRLEEAAKRDHRKIGKQLDLYH--MQEEAPGMVFWHNDGWTIFRELEVFVRTKLKE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +++Y + M   +  N +  I  P +      IF   +K
Sbjct: 288 YEYQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSENREYCI-KPMNCPGHVQIFNQGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N       
Sbjct: 347 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVY 405

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSEN 236
            ++   G + I ++  + P   IG D       L D  E  +  +      P    P E 
Sbjct: 406 DMYSTFGFEKIVVKLSTRPEKRIGSD------DLWDRSEADLAAALKENGIPFEYQPGEG 459

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I                       L D L        R  + G +      +SL
Sbjct: 460 AFYGPKIEFT--------------------LHDCLD-------RAWQCGTV---QLDFSL 489

Query: 297 P--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  +SA++ G   +     M    I G+M     ++   + G    +P  +AP ++ ++N
Sbjct: 490 PGRLSASYVGESNERQVPVMIHRAILGSMERFIGILTEEYAG---FFPTWLAPVQVVVMN 546

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        +   ++  +L   G     D   E+IG +     L   P  ++ G K V  
Sbjct: 547 ITDGQS---EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEA 603

Query: 414 SKVEIKHRLTGIREDMSLEEVI 435
            KV ++ R       + + EVI
Sbjct: 604 GKVAVRTRRGKDLGSIDVNEVI 625


>gi|229060032|ref|ZP_04197403.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228719251|gb|EEL70859.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 639

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +R  QN     E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLRGIQNEYNYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ + K+    P +      +F+  + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDHKSFALKPMNCPGHMLMFKYKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|72547539|ref|XP_843247.1| threonyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|323363762|emb|CBZ12768.1| putative threonyl-tRNA synthetase [Leishmania major strain
           Friedlin]
          Length = 787

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +   +R++  R G  E+  P + S+ LW+ SG ++ Y  
Sbjct: 300 FHEVSPGSAFWLPHGARIYNTLVEFLRKKYRRCGFQEVISPNMYSSKLWMVSGHWEKYAD 359

Query: 92  EML-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     ++ D  +   P +      +F S   SY+ LP  +    +  R+EL     G+
Sbjct: 360 SMFCTKCEKEDFGL--KPMNCPGHCIMFASQPHSYKELPIRYADFGVLHRNELSGALTGL 417

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 418 TRVRRFQQDDAHIF 431


>gi|228939521|ref|ZP_04102109.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972374|ref|ZP_04132985.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978988|ref|ZP_04139352.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228780699|gb|EEM28913.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228787391|gb|EEM35359.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820221|gb|EEM66258.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326940068|gb|AEA15964.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 640

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|312879303|ref|ZP_07739103.1| prolyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310782594|gb|EFQ22992.1| prolyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 501

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 135/339 (39%), Gaps = 74/339 (21%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E V+  ++   ++S+R+LP    Q     R E RPR   +R+ EFL ++ 
Sbjct: 123 EEPLVVRPTSETVIGHMYSKWVQSWRDLPLLINQWCSVMRWEKRPRL-FLRTSEFLWQEG 181

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           +    T   ++    +  ++ L ++ R+ ++ + +               +V  +  E +
Sbjct: 182 H----TAHATRDEAMEETLTMLEVYRRIMVEELALP--------------VVAGEKSEGE 223

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F                 D+  +  +++    A  A TS    +             A+
Sbjct: 224 RFPGA--------------DNTFTCEAMMSDKKALQAGTSHFLGQNF-----------AK 258

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
             E+                 F+  DG+  +    S+G+ + R++ A+I +  D  G++ 
Sbjct: 259 AFEIA----------------FQDQDGQVQFAWTTSWGV-STRLIGALIMTHADDDGLVL 301

Query: 341 PDSVAPFKISLINIKAHDQ--------VCRDACEKIYARLSK--VGCDVFWDDMGEQIGS 390
           P  VAP K++L+ I   ++          R+    + ARL +  V  D  +     + G 
Sbjct: 302 PPHVAPVKVALLPISTDEERLASDLEPKARELVTALEARLGRRSVALDTQYH---MRPGD 358

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +F      G PL++ +G +   + +V    R TG + D+
Sbjct: 359 RFFSHLQKGVPLRLELGEREWQEGRVRAVRRDTGEKIDL 397


>gi|304408774|ref|ZP_07390395.1| threonyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302777|ref|ZP_07582532.1| threonyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304352595|gb|EFM16992.1| threonyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306913137|gb|EFN43559.1| threonyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 642

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTDSQVQEEVSACIQMVYDTYATFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q     +     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRDNNIEFTILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPSRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  E++     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVEEVVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|225010590|ref|ZP_03701061.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005419|gb|EEG43370.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
          Length = 491

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++     T+   +GK  +V   S+G+ + R++ A+I +  D  G++
Sbjct: 234 KALQAGTSHFLGQNFAKAFDVTYATKEGKQAHVWATSWGV-STRLMGALIMTHSDDNGLV 292

Query: 340 WPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKV----GCDVFWDDM-GEQIGSQFA 393
            P  +AP ++ ++ I K  DQ+  DA  +  A L K     G  V +D     + G +F 
Sbjct: 293 LPPKLAPIQVVIVPIYKGTDQL--DAIAEKVAPLVKALKSKGISVKFDQRDTHKPGFKFN 350

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             +L G P+++ +G + + ++  E+  R T  +E ++ + ++ +
Sbjct: 351 EYELKGVPIRLAIGQRDLDNNTFEVARRDTLTKETVASDHLVEH 394



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D +R  I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEELIVRPTSETIIWDTYRKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTSEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T E +     +M   Y
Sbjct: 174 HTAHATKEEAIAEAEQMMEVY 194


>gi|203284314|ref|YP_002222054.1| prolyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|201083757|gb|ACH93348.1| prolyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 491

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 24/193 (12%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   Y G  ++      F+  +G+  YV   S+G+ + R++ A+I    D KG+I
Sbjct: 223 KALQAGTSHYLGLNFAKAFDVKFQNKNGEMSYVFATSWGV-STRLIGALIMVHSDSKGLI 281

Query: 340 WPDSVAPFKISLINI-KAHDQVCRDACE---KIYARLSKVGCDVFWD-DMGEQIGSQFAV 394
            P  +AP +I ++ I K  D V +   E    I+  L K    V  D D     G +FA 
Sbjct: 282 LPPKIAPIEILIVPIFKKDDDVNKKILEYATTIFDILVKEKFRVEIDKDFKNSPGFRFAA 341

Query: 395 ADLLGFPLQVIVGSKFV---------------SDSKVEIKHRLTGIREDMSLE--EVINY 437
           ++  G P+++ +GS  +               S  +V  K  L  I+E++     E+ N 
Sbjct: 342 SEFKGIPIRIEIGSNDILMDCVTVARRDRDKNSKYQVSFKELLPKIKEELETMQCELFNK 401

Query: 438 A-SHRFSNNRPVL 449
           A   R SN + ++
Sbjct: 402 ALEFRNSNTKEII 414


>gi|113475159|ref|YP_721220.1| threonyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|110166207|gb|ABG50747.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Trichodesmium
           erythraeum IMS101]
          Length = 608

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 8/166 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G    +++   +++EQ + G + +  P +   DL+  SG +  Y ++M  + 
Sbjct: 222 GLPLWTPKGTMLKNSLKDFLQQEQLKRGYLPVDTPHIARIDLFKTSGHWQKYKEDMFPMM 281

Query: 98  DRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             +++A       +  P +      I+++ ++SYR LP    +    +R E      G+ 
Sbjct: 282 AEDEQAEALEQGFVLKPMNCPFHIQIYKNELRSYRELPIRLAEFGTVYRHEKSGELGGLT 341

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F   D++ F +TPE     +  +    L +F  L L++   R
Sbjct: 342 RVRGFTQDDSHLF-VTPEQLDAEFLSVVDLTLFVFKSLQLQNFKAR 386


>gi|160875442|ref|YP_001554758.1| threonyl-tRNA synthetase [Shewanella baltica OS195]
 gi|189083621|sp|A9L2Q9|SYT_SHEB9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160860964|gb|ABX49498.1| threonyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315267632|gb|ADT94485.1| threonyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 642

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + N+    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSIFLELERFIRRKLNQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T    +   +         +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTDSQVQEEVSACIQMVYDTYATFGFENIVVKLSTRPEKRIGDDAM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q     +     +P E   +   I                       L
Sbjct: 434 WD---RAEEALKQALRDNNIEFTILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPSRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G+   +P  +AP ++ ++NI        D  E++     + G    +D  
Sbjct: 521 FLGILIEEYAGR---FPTWLAPMQVVVMNITDKQA---DYVEEVVKFFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|113867357|ref|YP_725846.1| threonyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123134164|sp|Q0KBZ3|SYT_RALEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113526133|emb|CAJ92478.1| Threonyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 635

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +T  + H  + + G+  W P G +    V   +R     
Sbjct: 231 YLHMLEE----AEKRDHRKLGKTLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLTD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG + +Y KE + + +   +     P +      IF   ++
Sbjct: 287 AGYDEVRTPQVMDRSLWEKSGHWQNY-KENMFVTESEKRDYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVS 180
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +      ++N++  S
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFCTEEQIVAEAKAFNELAFS 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF--CSKDFMDFP 231
              ++   G K + ++    P     S E    A+ G       C  D+ + P
Sbjct: 406 ---VYDDFGFKDVKVKLSLRPDQRAGSDEIWDHAEEGLRLALRACGVDWEELP 455


>gi|225387532|ref|ZP_03757296.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
 gi|225046368|gb|EEG56614.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
          Length = 584

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 152/414 (36%), Gaps = 51/414 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M      G   +LP G    + +    RE   R G  E+S P + S  LW  SG +D Y 
Sbjct: 203 MFADEGPGFPFFLPKGMTLKNTLIDYWREIHLREGYQEVSTPIILSRKLWENSGHWDHYK 262

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M   + D  D A+   P +      ++++   SYR LP    ++ L  R E   +  G
Sbjct: 263 DNMYTTVIDEEDFAV--KPMNCPGGMLVYKNTPHSYRELPLRVGELGLVHRHEKSGQLHG 320

Query: 149 VMRSREFLMKDAYSF--DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +MR R F   DA+ F  D   E       ++       F       +  R E   +G D 
Sbjct: 321 LMRVRCFTQDDAHIFMRDDQIEDEIKGVTRLINEVYSQFGFEYFVELSTRPEDS-MGSDE 379

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E   +A  G  +              E+   D I++     E   A Y    D H   
Sbjct: 380 DWE---MATNGLRKAL------------EDMGLDYIVN-----EGDGAFYGPKIDFH--- 416

Query: 267 LFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
           L DSL        R  + G I   F    ++ L  +A     DG K   + +     G++
Sbjct: 417 LRDSL-------GRTWQCGTIQLDFQMPQRFDLEYTA----EDGNKKRPIMIHRVCFGSI 465

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++     GK  +W   +AP ++ +I +    +   D    +Y +L   G     D
Sbjct: 466 ERFIGILIEHFAGKFPVW---LAPVQVKVIPVS---EKSMDYATGVYEKLKAAGIRTELD 519

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              E++G +   A L   P  +++G K  ++  + ++ R  G      LE  I 
Sbjct: 520 HKDEKVGYKIRQAQLEKVPFMLVLGEKEAAEGAITVRSRDKGDLGAAQLEAFIG 573


>gi|289668713|ref|ZP_06489788.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 634

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/394 (19%), Positives = 142/394 (36%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ ++NI        D+  K    L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVVNITDAQAEYVDSVRKT---LANQGFRVSADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 611


>gi|254522893|ref|ZP_05134948.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219720484|gb|EED39009.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 633

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/409 (19%), Positives = 146/409 (35%), Gaps = 42/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+   +TG  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWALWQVVEQYMRKVYRKTGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYALKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F  T    +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVF-CTENQVEAEVTAFHQQALAVYQHFGFDEIQVKIALRPESRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+        S       +P E                  A Y    + H   L
Sbjct: 434 WD---KAEGALRSALSSNGVEWQELPGEG-----------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFLG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G+   +P  +AP ++ + NI        +    +   L++ G  V  D   E+
Sbjct: 524 ILIEHHAGQ---FPAWLAPTQVVVANIT---DAQAEYVSGVTKTLAEQGFRVSSDLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +     L   P  +++G +   +  V ++ R       MSL+  I 
Sbjct: 578 IGYKIREHTLQRVPYLLVIGDREKENGAVAVRTRSGEDLGSMSLQAFIE 626


>gi|300120854|emb|CBK21096.2| unnamed protein product [Blastocystis hominis]
          Length = 767

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 156/414 (37%), Gaps = 55/414 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP G    + +   IR E +  G  E+  P + + +LW  SG    Y   
Sbjct: 387 HELSPGSCFFLPKGAYIYNKLIEFIRHEYHERGYTEVVSPNVYNLELWNISGHASHYRDS 446

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L + +D      P +      +F+  + SYR LP  F    +  R+EL     G+ R
Sbjct: 447 MF-LFNCDDTEYGLKPMNCPGHCLMFKHAMHSYRELPIRFADFGVLHRNELSGALNGLTR 505

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEF 210
            R F   DA+ F   P+  K   + +      ++   G+  ++ +        GDL+   
Sbjct: 506 VRRFQQDDAHIF-CRPDQIKQEVSGVLDFMRHVYGIFGMSFNLELSTRPKKAMGDLA--- 561

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WT------APYAATSDV 262
             L    E  +                      SLN  + +  W       A Y    D+
Sbjct: 562 --LWQQAEASL--------------------TESLNEFIGEGNWKVNPGDGAFYGPKIDI 599

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGA 321
              K+ D+L    + +   ++    F    ++ L     +K ADG  +  V +    +G+
Sbjct: 600 ---KVMDALHRVHQTATIQLD----FQLPIRFEL----EYKKADGSMERPVMVHRAILGS 648

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +    A++     GK   WP  ++P +  +I + A    C +  +K+  RL         
Sbjct: 649 VERSFAILLEHFKGK---WPFWLSPRQAIVIPVNA---TCMEYAQKVRQRLWDNYFQAEV 702

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DD G  +      A L  F   ++VG+K      V I+ R   I    +++E I
Sbjct: 703 DDTGRTLNKMVREAQLAQFNYILVVGNKEAETDTVTIRSRSNEIIGTKTVDECI 756


>gi|261250893|ref|ZP_05943467.1| threonyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937766|gb|EEX93754.1| threonyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 642

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +RE+    G  E+  P +    LW  SG +D Y +
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFVREKLTEYGYQEVKGPLIMDRVLWERSGHWDKYAE 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSEN-REYALKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 376 RVRGFTQDDAHIF 388


>gi|325295461|ref|YP_004281975.1| threonyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065909|gb|ADY73916.1| threonyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 658

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 99/468 (21%), Positives = 178/468 (38%), Gaps = 85/468 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +Y   + +   RD  +   +L L + +  +   G+  W P G      +   + +E  +
Sbjct: 230 EEYLHRLEEAKKRDHRVLGKQLDLFS-IYEEAGSGLVFWHPNGAIIRREIEEWVEKEHEK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRN--------DKAM 104
            G   +  P +  ADLW  SG YD Y + M            +L +          ++A 
Sbjct: 289 RGYQRIYTPHIMKADLWKISGHYDFYKENMFFVPVVEHDEEEKLGNEKVPLTCEEVERAN 348

Query: 105 IYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAY 161
            Y   P +      I++S  +SY++LP  F++     R E      G++R R F   D +
Sbjct: 349 WYAVKPMNCPGHILIYKSQPRSYKDLPLRFFEFGTVHRYEKSGSLHGLLRVRGFTQDDGH 408

Query: 162 SFDLTPEGSKHS------YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVL 213
            F   P+  K        Y    +S  ++ + + + + P +     IG D    H    L
Sbjct: 409 IF-CRPDQLKDEILGVLDYVMELLSVFKLDYVINIGTKPEKY----IGSDEAWEHATQAL 463

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            D         +  +++ I   +  F     DI  L++I  +W  P              
Sbjct: 464 IDA------LKERGLEYNIVEGDGAFYGPKIDIAVLDAIGRKWDGPTIQVD--------F 509

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           +LPE         ++ ++   G K    M           H   MGS      R +  +I
Sbjct: 510 NLPER-------FDLTYVDRDGEKKRPVMV----------HRAIMGS----IERFIGLLI 548

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E        ++P  +AP ++ +I +   D+   +  E ++ +L +VG     DD   ++G
Sbjct: 549 EHYAG----LFPLWLAPTQVVVIPVS--DKYI-NYAENVFRKLKEVGIRAKLDDESGKVG 601

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +   A+LL  P  VIVG K    + V ++ +  G   D+   E+ N+
Sbjct: 602 YKIRKAELLKIPYMVIVGEKEQESNTVSVRSKKEG---DLGSMEISNF 646


>gi|300772848|ref|ZP_07082717.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759019|gb|EFK55846.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 641

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 151/413 (36%), Gaps = 61/413 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   ++  Q + G   +  P +    L+V SG Y+ YG++  +  
Sbjct: 262 GLPLWLPKGAALRQKLIDFMQRAQLKAGYEPVVTPHIGHKQLYVTSGHYEKYGEDSFQPI 321

Query: 98  DR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 +     P +     +I+++  +SY++LP  F +    +R E      G+ R R 
Sbjct: 322 KTPVEGEEFFLKPMNCPHHCEIYKTKPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+    L +F  LG +    +              + L 
Sbjct: 382 FTQDDAHLF-CRPDQVKEEFKKVIDLVLYVFGALGFEDYIAQ--------------VSLR 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D      +   D                       E W     A  +  +EK   ++ E 
Sbjct: 427 DPENRTKYIGSD-----------------------ENWALAERAIIEAADEKGLPTVVEY 463

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G+D   H  V +     G
Sbjct: 464 GEAAFYGPKLDFMVKDALGRKWQLGTIQVDYNLPERFELEYTGSDNAKHRPVMIHRAPFG 523

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++    AV+     G+  +W   +AP +  ++ +    +   +  +K+   L+       
Sbjct: 524 SLERFIAVLIEHCAGRFPLW---LAPEQFIVLPV---SEKYEEYAQKLLESLNNSDIRGL 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            D   E++G +   A++   P  +IVG K      V ++   +G    M+ EE
Sbjct: 578 IDLRDEKVGRKIRDAEVKKLPYMLIVGEKEAESGTVSVRKHGSGDVGSMTPEE 630


>gi|255019144|ref|ZP_05291270.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 182

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 3/171 (1%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +L L T  I +  +G+  WLP G      +   I +++ R G   +  P + 
Sbjct: 6   RDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLGYNHVYTPIMA 64

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SYR LP    ++
Sbjct: 65  NVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPIRIAEL 124

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            +  R E+     G+ R R   + DA+ F + P+  K  + ++    L ++
Sbjct: 125 GMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELILEVY 174


>gi|269836488|ref|YP_003318716.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269785751|gb|ACZ37894.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 596

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 157/413 (38%), Gaps = 58/413 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +     EE    G   +  P + S D++ +SG  ++Y + M    
Sbjct: 214 GLILWHPKGAMIRHLIERFETEEHLARGYQLVYTPHIASGDIYRKSGHLETYQENMYSPM 273

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D         P +      I+ S ++SYR+LP    ++   +R E      G++R R F 
Sbjct: 274 DIEGAPYYLKPMNCPGHIMIYNSQVRSYRDLPIRLAELGTVYRYERSGTLHGMLRVRGFT 333

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             DA+ F   P+  +     +    + + R+F       +  R E   IG D + E    
Sbjct: 334 QDDAHIF-CRPDQLEDEIKGVLDLALYFARVFGYEYEAFLATRPEKS-IGSDENWE---- 387

Query: 214 ADTGETQVFCSKDFMDFPI---PSENTDFD---DIISLNSIVEQWTAPYAATSDVHNEKL 267
               ET     ++ M  P    P     +    DI  L+S+  +WT P            
Sbjct: 388 -RATETLANALRN-MGIPYEIDPGAGAFYGPKIDIKFLDSLGREWTGPTIQVD------- 438

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAM-RVV 325
             +LPE                          AT+ G DG+ H V M    + G+M R V
Sbjct: 439 -FNLPER-----------------------FDATYVGEDGERHRVVMVHRTVLGSMERFV 474

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +IE  + G   +W   +AP +  +I I   D+    A E + ARL +    V  +D  
Sbjct: 475 GGLIE-HYAGAFPVW---LAPVQAEVIPIA--DRHVPYAHE-VAARLKEADLRVEVNDSN 527

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +++ ++   A L   P  ++VG K      V ++ R       M ++E I  A
Sbjct: 528 DRMQAKIRRAQLQRIPYMLVVGDKEAEAGTVAVRLRTNENLGAMPVDEFIALA 580


>gi|221217966|ref|ZP_03589433.1| threonyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224533347|ref|ZP_03673941.1| threonyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225549973|ref|ZP_03770934.1| threonyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|221192272|gb|EEE18492.1| threonyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224513512|gb|EEF83869.1| threonyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225369432|gb|EEG98884.1| threonyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 581

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 157/409 (38%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHE--FI 211
             DA+    T         ++    + ++ + G  +      + P   +G D   E    
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFSNPKAYLSTKPDKSVGNDSDWEMSLK 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL +T            DF +P E            I +   A Y    D+   K+ DSL
Sbjct: 384 VLEET----------LSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSL 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAV 328
               ++S    +          ++LP   + T+   DGK+    M     +G++     +
Sbjct: 419 EREWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +   + G   +W   ++P ++ +I +   + +  D   K++ +    G  +  D+   ++
Sbjct: 469 LVEHYGGAFPLW---LSPVQVVIIPV---NNIVEDYAIKVFNKFKNEGIRIKLDNSSSRM 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++         P   I+G +   + ++ I+ R       M L+E + +
Sbjct: 523 NAKIREYQAKKIPYMFIIGEREAIEERISIRTRTNEQINGMKLDEALKF 571


>gi|27904622|ref|NP_777748.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839437|sp|P59554|SYT_BUCBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27904019|gb|AAO26853.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 643

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 14/180 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GMI  H  G   W+         +  +IR +  +    E+  P + +  +W +SG  D+Y
Sbjct: 263 GMIFWHRNG---WI-----VFQELKKLIRVKLRKYNYQEVKTPVMMNKKIWKDSGHLDNY 314

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M  +   N +  I  P +      IF   ++SYR+LP    +     R+E      G
Sbjct: 315 KESMFMVCSSNFEYGI-KPMNCPGHVQIFNHVVRSYRDLPIRISEFGSCHRNEPSGALHG 373

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F   DA+ F    +      N + + Y  I+   G K I +R  + P   IG D
Sbjct: 374 LMRIRNFTQDDAHIFCREDQICSEVSNCIRMVY-EIYKIFGFKKILVRLSTRPKNRIGND 432


>gi|89900130|ref|YP_522601.1| threonyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|89344867|gb|ABD69070.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodoferax
           ferrireducens T118]
          Length = 669

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I  H+ G+  W P G      V   +R+     G  E+  P +    LW ++G +D Y +
Sbjct: 283 IDDHAPGLVFWHPKGWTLWQGVEQYMRQVYRDNGYQEVKGPQILDKSLWEKTGHWDKY-R 341

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +   +   +     P +      IF+  IKSYR+LP  + +     R+E      G+M
Sbjct: 342 ENMFTTESEKREYALKPMNCPGHILIFKQGIKSYRDLPLRYGEFGQCHRNEPSGGLHGIM 401

Query: 151 RSREFLMKDAYSF 163
           R R F   D + F
Sbjct: 402 RVRGFTQDDGHIF 414


>gi|114319929|ref|YP_741612.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312208|sp|Q0AAL5|SYT_ALHEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114226323|gb|ABI56122.1| Ser-tRNA(Thr) hydrolase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 641

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 154/415 (37%), Gaps = 51/415 (12%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R      + + + G+  W P G +    V   IR      G  E+  P 
Sbjct: 237 EAEKRDHRRIGRAQNLFHLQEEAPGMAFWHPKGWQIYLEVQEYIRRLTRGHGYQEIHTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    LW +SG +D +   M  + +   +     P +      ++   +KSYR+LP    
Sbjct: 297 LVDRSLWEKSGHWDKFQDNMF-ITESESRDYAVKPMNCPCHVQVYNQGLKSYRDLPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F+  DA+ F  T +  +           + ++  G   
Sbjct: 356 EFGSCHRNEPSGTLHGLMRVRNFVQDDAHIF-CTEDQIQQEVADFIDLVFKAYNDFGFDD 414

Query: 193 IPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           + +   + P   +G D       L D  E  +                      +LN   
Sbjct: 415 VIIALSTRPDERVGED------ALWDKAEHALEE--------------------ALNRAG 448

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
            +W          +  K+  +L   K    R  ++G I      +S+P  + AT+   DG
Sbjct: 449 LEWQL-QPGEGAFYGPKIEFTL---KDCLGRTWQLGTI---QVDFSMPGRLGATYVAEDG 501

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   V +    +G++     ++   + G    W   +AP +  ++NI        +   
Sbjct: 502 SKKVPVMLHRAILGSLERFIGILIEHYAGALPPW---LAPVQAVVLNITDRQG---EYAR 555

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +I  R  + G  V  D   E+IG +     L   P  ++VG K V ++ V ++ R
Sbjct: 556 RIEKRFRERGLRVDADLRNEKIGFKIREHTLQKVPYMLVVGDKEVENNTVAVRTR 610


>gi|296331396|ref|ZP_06873868.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305676383|ref|YP_003868055.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151511|gb|EFG92388.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414627|gb|ADM39746.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 638

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + +    RE Q + G  E+  P + +  LW +SG +
Sbjct: 253 LELFMFSEEAPGMPFYLPKGQIIRNELERFSRELQTKAGYEEVRTPFMMNQRLWEQSGHW 312

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D Y ++ +  ++ +D      P +      IF++ + SYR+LP    +     R E    
Sbjct: 313 DHY-RDNMYFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYRDLPIRMAEFGQVHRHEYSGA 371

Query: 147 F-GVMRSREFLMKDAYSF 163
             G++R R F   DA+ F
Sbjct: 372 LNGMLRVRTFCQDDAHIF 389


>gi|293396370|ref|ZP_06640648.1| threonine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291421159|gb|EFE94410.1| threonine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 387

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 154/413 (37%), Gaps = 50/413 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 1   MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 60

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 61  AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLM 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N+       ++   G + I ++  + P   IG D  
Sbjct: 120 RVRGFTQDDAHIF-CTEDQVRAEVNECIRMVYDVYGTFGFEKIAVKLSTRPEKRIGTD-- 176

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                D    +E  D    ++ N I  ++     A      E  
Sbjct: 177 ---------------------DMWTRAEE-DLAAALTENGIPFEYQPGEGAFYGPKIEFT 214

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      + LP  + A++ G + +     M    I G+M 
Sbjct: 215 LHDCLD-------RAWQCGTV---QLDFFLPGRLGASYVGENNERVVPVMIHRAILGSME 264

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP ++ ++NI        D  +++  +L   G  V  D 
Sbjct: 265 RFIGILTEEYAG---FYPTWIAPVQVVVMNITDSQS---DYVQQLTKKLQDAGIRVKADL 318

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E+IG +     L   P  ++ G K V   KV ++ R       + + EV++
Sbjct: 319 RNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVVD 371


>gi|15611183|ref|NP_222834.1| threonyl-tRNA synthetase [Helicobacter pylori J99]
 gi|8928389|sp|Q9ZMV3|SYT_HELPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4154621|gb|AAD05692.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 612

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|83309439|ref|YP_419703.1| threonyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|123740560|sp|Q2WAI1|SYT_MAGMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82944280|dbj|BAE49144.1| Threonyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 638

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIHQHSKGIYS--WLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + HQ  +   S  W   G      V + +R     
Sbjct: 233 YLHMLEE----AEKRDHRRLGREMELFHQQEEAAGSVFWHKKGWTLYRAVESYMRRRLEA 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P L    LW  SG  D + + M  +  ++++ +   P +      IFR  IK
Sbjct: 289 NNYEEVKTPQLVDFSLWEASGHADKFSESMFTIKTQDERHLAVKPMNCPCHVQIFRQGIK 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +     R E      G+MR R F   DA+ F
Sbjct: 349 SYRDLPLRMAEFGSCHRYEPSGALHGIMRVRAFTQDDAHIF 389


>gi|289661762|ref|ZP_06483343.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 636

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/394 (19%), Positives = 142/394 (36%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 258 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 317

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 318 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 377 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 435

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 436 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 472

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 473 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 525

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ ++NI        D+  K    L+  G  V  D   E+
Sbjct: 526 ILIEHHAGA---FPSWLAPVQVVVVNITDAQAEYVDSVRKT---LANQGFRVSADLRNEK 579

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 580 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 613


>gi|227537393|ref|ZP_03967442.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242771|gb|EEI92786.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 641

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 151/413 (36%), Gaps = 61/413 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   ++  Q + G   +  P +    L+V SG Y+ YG++  +  
Sbjct: 262 GLPLWLPKGAALRQKLIDFMQRAQLKAGYEPVVTPHIGHKQLYVTSGHYEKYGEDSFQPI 321

Query: 98  DR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 +     P +     +I+++  +SY++LP  F +    +R E      G+ R R 
Sbjct: 322 KTPVEGEEFFLKPMNCPHHCEIYKTKPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRG 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  K  + K+    L +F  LG +    +              + L 
Sbjct: 382 FTQDDAHLF-CRPDQVKEEFKKVIDLVLYVFGALGFEDYIAQ--------------VSLR 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D      +   D                       E W     A  +  +EK   ++ E 
Sbjct: 427 DPENRTKYIGSD-----------------------ENWVLAERAIIEAADEKGLPTVVEY 463

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIG 320
              +  G +        +G  +  GT    Y+LP      + G+D   H  V +     G
Sbjct: 464 GEAAFYGPKLDFMVKDALGRKWQLGTIQVDYNLPERFELEYTGSDNAKHRPVMIHRAPFG 523

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++    AV+     G+  +W   +AP +  ++ +    +   +  +K+   L+       
Sbjct: 524 SLERFIAVLIEHCAGRFPLW---LAPEQFIVLPV---SEKYEEYAQKLLESLNNSDIRGL 577

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            D   E++G +   A++   P  +IVG K      V ++   +G    M+ EE
Sbjct: 578 IDLRDEKVGRKIRDAEVKKLPYMLIVGEKEAESGTVSVRKHGSGDVGSMTPEE 630


>gi|254487235|ref|ZP_05100440.1| threonyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214044104|gb|EEB84742.1| threonyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 648

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 146/402 (36%), Gaps = 56/402 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G +E++ P +    LW +SG +D Y  
Sbjct: 260 MQEEAPGQVFWHPNGWLIYTQLQDYMRRKQRAGGYVEVNTPQVVDRKLWEKSGHWDKYQD 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 HMFIVEVDEEHAREKSVNALKPMNCPCHVQIFNQGMKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   D + F    E        +++ +L  I+  LG ++  ++    P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CREDQIEEETLIYIEFLSAIYKDLGFENFKVKFSDRPDTR 437

Query: 205 DLSHEFIVLADTGETQVFCS--KDFMDFPI-PSENTDFD---DIISLNSIVEQWTAPYAA 258
             S E   + D  E  +  +  K  ++  I P E   +    + +  ++I   W      
Sbjct: 438 AGSDE---VWDKAEAALLSATRKAGIEPEINPGEGAFYGPKLEFVLTDAIGRDWQCGTHQ 494

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSY 317
              V        LPE                        + ATF G+DG  H  V +   
Sbjct: 495 VDFV--------LPER-----------------------LDATFVGSDGAKHRPVMLHRA 523

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G+      ++   H GK   W   +AP ++ + +I +      D   ++   L+  G 
Sbjct: 524 TLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITSE---ADDYVREVIETLTAAGV 577

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               D   E+I  +     +   P+ + VG++ V +  V ++
Sbjct: 578 RAEADTRNEKINYKVREHSVGKVPVILAVGAREVEEKTVSVR 619


>gi|159043329|ref|YP_001532123.1| threonyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|189083606|sp|A8LQX9|SYT_DINSH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157911089|gb|ABV92522.1| threonyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 654

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 149/401 (37%), Gaps = 54/401 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R  Q   G +E++ P +    LW  SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPNGWTVYTTLQDYMRRRQRENGYVEVNTPQVVDRKLWEASGHWDKYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      ++   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEHAREKAINALKPMNCPCHVQVYNQGLKSYRDLPLRMAEFGACNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGP--- 201
             G+MR R F   DA+ F    E         F+  L   +R LG +S  ++  + P   
Sbjct: 380 LHGLMRVRGFTQDDAHIF--CTEDQIQDETARFIRMLSTIYRDLGFESFDIKFSTRPEVR 437

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            G D       + D  E         ++  I +   DF+       +     A Y    D
Sbjct: 438 AGSD------AVWDKAEAA-------LEAAIRTVTDDFE-------LDPGEGAFYGPKLD 477

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI 319
               KL D++        R  ++G    F   + LP  + AT+ G DG  H   M    I
Sbjct: 478 F---KLTDAI-------GREWQLG---TFQADFVLPERLDATYIGEDGAKHRPVMLHRAI 524

Query: 320 -GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G+      ++  +  GK   W   +AP ++ + +I +      D   ++ A L++ G  
Sbjct: 525 LGSFERFLGILIENFAGKLPFW---LAPRQVVVASIISE---ADDYVREVVAALTRAGIR 578

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   E+I  +     +   P+ + VG + + +  V ++
Sbjct: 579 AEADIRNEKINYKVREHSVGKVPVILAVGRREMEERTVTLR 619


>gi|312901397|ref|ZP_07760674.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|311291473|gb|EFQ70029.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
          Length = 626

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 151/377 (40%), Gaps = 40/377 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   +L+  SG +D Y ++M    
Sbjct: 283 GLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPM 342

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      ++++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 343 DMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 402

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F + P+  K  + +     + ++    +     R         LS+      D
Sbjct: 403 TLNDGHTF-VRPDQIKDEFKRTLELMVAVYADFNITDYRFR---------LSYR-----D 447

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  +   D M     +      D + L+    E   A Y    DV   ++  +L   
Sbjct: 448 PNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDV---QVKTALGME 504

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESS 332
           + +S   ++    F    ++ L    T+ G DG++ +  V +    +  M    A +   
Sbjct: 505 ETLSTIQLD----FLLPERFDL----TYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEV 556

Query: 333 HDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           + G    W   +AP + ++I  +++AH +   +  E++ A+    G  V  DD  E++G 
Sbjct: 557 YKGAFPTW---LAPIQATIIPVSVEAHSEYAYEIKERLQAQ----GLRVEVDDRNEKMGY 609

Query: 391 QFAVADLLGFPLQVIVG 407
           +   +     P Q++VG
Sbjct: 610 KIRASQTQKVPYQLVVG 626


>gi|47565742|ref|ZP_00236782.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47557378|gb|EAL15706.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 639

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ + K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDHKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|283779278|ref|YP_003370033.1| threonyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283437731|gb|ADB16173.1| threonyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 666

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 152/419 (36%), Gaps = 47/419 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  WLP G      + + +REE  R G   +  P +   DL+  SG +  Y   M    
Sbjct: 265 GLILWLPKGATIRGLLESFVREELIRRGYQTVYTPHIGKVDLYRTSGHFPYYADSMFPPF 324

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             + ++  +  P +      I++S  +SYR LP    +     R E   +  G+ R R F
Sbjct: 325 VTKEEEEYLLKPMNCPHHIMIYKSKPRSYRELPLRLAEFGTVHRYEKSGQLSGMTRVRGF 384

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL---SHEFIV 212
              DA+ F  T E     +         +   LGL +  +R        D    S E   
Sbjct: 385 TQDDAHIF-CTDEQVPGEFEGCIEMTQFVLKSLGLDNYRVRLGFRDPKSDKYVGSEELWN 443

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            A     +V C++  +++        F     D +  + I  +W         +   +L 
Sbjct: 444 RAQGALVEV-CTRLGIEYTAEEGEAAFYGPKADFVVTDCIGREW--------QLGTVQLD 494

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAA 327
            +LP  +R             F  +Y         GAD K H  V +    +G+M     
Sbjct: 495 YNLPSAER-------------FDLEYV--------GADNKIHRPVMIHRAPLGSMERFIG 533

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+     G   +W   +AP +  ++ +    +      E+   +L   G  V  D   E+
Sbjct: 534 VLIEHFAGAFPLW---LAPEQARVVTVSEKSEAYGREVEE---KLRSAGFRVSGDYRSEK 587

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G++   A L   P   +VG +      V ++ RL G    +SL + +   S   +  +
Sbjct: 588 LGAKIRDAQLELIPYMFVVGPRDAEQGTVSLRDRLDGDLGALSLADAMQRLSDEVAERK 646


>gi|197284912|ref|YP_002150784.1| threonyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227355315|ref|ZP_03839716.1| threonyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|238693141|sp|B4ETK6|SYT_PROMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194682399|emb|CAR42252.1| threonyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227164539|gb|EEI49410.1| threonyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 642

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 148/402 (36%), Gaps = 58/402 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMAFWHNDGWTIFRELETFVRCKLKEYDYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF+  ++SYR+LP    +     R+E      G+M
Sbjct: 316 NMFTTSSENREYCI-KPMNCPGHVQIFKQGLRSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E      N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQILSEVNNCIKLIYDVYSTFGFEKIVVKLSTRPEKRIGED-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-----PSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                L D  ET +  +K   D  I     P E   +   I                   
Sbjct: 432 ----ALWDIAETDL--AKALTDNNIEFEYQPGEGAFYGPKIEFT---------------- 469

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGI 319
               L+D L        R  + G +      +SLP  + A++   + +    V +    +
Sbjct: 470 ----LYDCLD-------RAWQCGTV---QLDFSLPGRLGASYVAENNERKVPVMLHRAVL 515

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++     ++   + G    +P  +AP ++ ++NI        D  +K+   L   G   
Sbjct: 516 GSLERFIGILTEEYAG---FFPTWLAPQQVVVMNITDGQA---DYVQKLVKELQDAGIRA 569

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 570 KADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611


>gi|184156306|ref|YP_001844646.1| threonyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|183227650|dbj|BAG28166.1| threonyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
          Length = 634

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/407 (19%), Positives = 158/407 (38%), Gaps = 35/407 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   + +++   G   +  P L + D +  SG +D Y ++M    
Sbjct: 250 GLPYWMPKGSTIRRTIERYVIDKEVGDGYEHVYTPVLMNLDAYKTSGHWDHYREDMFPPM 309

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  ++   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 310 DMGDGELLELRPMNCPSHIQIYKHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 369

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 370 TLNDGHTF-VALDQIQDEFAKILKLIMDVYKDFNINDYTFR---------LSYR-----D 414

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ + + D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 415 PKNTEKYFANDEMWERSQSMLKAAMDSMGLDYYEAEGEAAFYGPKLDIQTKT---ALGND 471

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    K+ L     + G DGK H   M   G +G M    A +   +
Sbjct: 472 ETMSTIQLD----FMLPEKFDL----HYVGEDGKQHRPVMIHRGVVGTMERFVAYLTEIY 523

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++++I +   D+   D  + +             D   E++G +  
Sbjct: 524 KGAFPTW---LAPNQVNIIPVS--DEKHGDYADDLAREFRAAQLRTVVDHRSEKMGYKIR 578

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +     P  ++VG   V++  V ++      +  MS ++ ++   H
Sbjct: 579 ESQTQKVPYTLVVGEDEVANGTVSVRKYGEKDQVSMSKQDFLDLILH 625


>gi|298491630|ref|YP_003721807.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233548|gb|ADI64684.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 606

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y +++  L 
Sbjct: 220 GLPLWTPKGTLLRTILEDFLKKEQLKRGYLTVVTPHIARVDLFKTSGHWQKYKEDIFPLM 279

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VM 150
                A   ++  +  P +      I++  ++SYR LP    +    +R E     G + 
Sbjct: 280 AEDAEAAAIEQGFVLKPMNCPFHIQIYKGELRSYRELPMRLAEFGTVYRYEQSGELGGLT 339

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F + D++ F +TPE                                     L +EF
Sbjct: 340 RVRGFTVDDSHLF-VTPE------------------------------------QLDNEF 362

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV--EQWTAPYAATSDVHNEKLF 268
           + + D   T VF S    +F        F D  S   I   E W     A      +   
Sbjct: 363 LSVVDLILT-VFRSLQLKNF---KARLSFRDPASDKYIGGDEVWDKSEGAIRRAVQQLGM 418

Query: 269 DSLPENKRVSARGIEVGHIF--------YFGT---KYSLP--MSATFKGADG-KDHYVQM 314
           D        +  G ++  IF          GT    Y+LP      +   DG +   V +
Sbjct: 419 DHFEGIGEAAFYGPKLDFIFSDALDREWQLGTVQVDYNLPERFDLEYVAEDGARKRPVMI 478

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++  +  ++   + G   +W   +AP +I L+ +    Q+  D  +++ A++  
Sbjct: 479 HRAPFGSLERLIGILIEEYAGDFPLW---LAPVQIRLLPV-GEAQI--DFTKEVVAKMLA 532

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G     D  GE++G     A+    P+  +VG K V  + + I+ R +G    +S+++V
Sbjct: 533 LGIRAEVDLSGERLGKLIRNAEKDKIPVMAVVGVKEVETNSLSIRTRASGELGVISVDQV 592

Query: 435 ---INYASHRFSN 444
              I  A + FSN
Sbjct: 593 VGKIQGAINNFSN 605


>gi|289674657|ref|ZP_06495547.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 248

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M     G +GK   +
Sbjct: 180 PVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAMKCQVLGENGKPVNL 239

Query: 313 QMGSYGIG 320
            MG YGIG
Sbjct: 240 AMGCYGIG 247


>gi|260662523|ref|ZP_05863418.1| threonyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260553214|gb|EEX26157.1| threonyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 627

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/407 (19%), Positives = 158/407 (38%), Gaps = 35/407 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   + +++   G   +  P L + D +  SG +D Y ++M    
Sbjct: 243 GLPYWMPKGSTIRRTIERYVIDKEVGDGYEHVYTPVLMNLDAYKTSGHWDHYREDMFPPM 302

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  ++   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 303 DMGDGELLELRPMNCPSHIQIYKHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 362

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 363 TLNDGHTF-VALDQIQDEFAKILKLIMDVYKDFNINDYTFR---------LSYR-----D 407

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ + + D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 408 PKNTEKYFANDEMWERSQSMLKAAMDSMGLDYYEAEGEAAFYGPKLDIQTKT---ALGND 464

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    K+ L     + G DGK H   M   G +G M    A +   +
Sbjct: 465 ETMSTIQLD----FMLPEKFDL----HYVGEDGKQHRPVMIHRGVVGTMERFVAYLTEIY 516

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++++I +   D+   D  + +             D   E++G +  
Sbjct: 517 KGAFPTW---LAPNQVNIIPVS--DEKHGDYADDLAREFRAAQLRTVVDHRSEKMGYKIR 571

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +     P  ++VG   V++  V ++      +  MS ++ ++   H
Sbjct: 572 ESQTQKVPYTLVVGEDEVANGTVSVRKYGEKDQVSMSKQDFLDLILH 618


>gi|110667672|ref|YP_657483.1| prolyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121689813|sp|Q18JG3|SYP_HALWD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109625419|emb|CAJ51843.1| proline--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 512

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y GT+++     T+   D         S+G+ + R + A+I +  D +G++ P +VAP +
Sbjct: 237 YLGTEFADAFDITYTDTDETSRVAHTTSWGL-SWRALGALIMTHSDNQGLVLPPTVAPEQ 295

Query: 349 ISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVI 405
           + ++ I   +   R  +  E +   L   G  V  DD  +Q  G +F   +L G PL+  
Sbjct: 296 VVIVPIWQTETKERVLEYAEDVANNLDDAGIRVELDDRDDQNPGFKFNEWELKGVPLRAE 355

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G    ++  V + HR  G        E++     +F
Sbjct: 356 IGPDEATEGTVTLIHRPDGESITAERSEIVETVQEQF 392


>gi|296228693|ref|XP_002759920.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 2
           [Callithrix jacchus]
          Length = 588

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 157/412 (38%), Gaps = 69/412 (16%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----ADR------- 99
           D ++ + + E  R G  E+  PTL S  LW +SG ++ Y ++M  +    +DR       
Sbjct: 203 DQLHRLFKAEYARRGFFEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPASSQSD 262

Query: 100 -----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                    +   P +      +F    +S+R LP          R E      G+ R R
Sbjct: 263 HSTRHTTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLCGLTRLR 322

Query: 154 EFLMKDAYSFDLTPE-----GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            F   DA+ F  T +      S   + +   + L    RL L + P    SG +G     
Sbjct: 323 CFQQDDAHIFCTTDQLEAEIQSCLDFLRSVYAVLGFSFRLALSTRP----SGFLGDP--- 375

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                         C  D  +  +     +F +   LNS      A Y    DVH   L 
Sbjct: 376 --------------CLWDQAEQVLQQALKEFGEPWDLNSGD---GAFYGPKIDVH---LH 415

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVV 325
           D+L        R  + G I      + LP+     +KG  G  +  V +    +G++  +
Sbjct: 416 DAL-------GRPHQCGTI---QLDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSVERL 465

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDM 384
             V+  S  GK   WP  ++PF++ +I +    ++  R+  + + A  + + CD+  D  
Sbjct: 466 LGVLAESCRGK---WPLWLSPFQVVVIPVGTEQEEYARETQQSLQA--AGLVCDLDADSR 520

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +  +   A L  +  Q +VG K  S S V I+ R   +  + SL E + 
Sbjct: 521 -LTLSRRIRRAQLAHYNFQFVVGQKEQSKSTVNIRTRDNRLLGEWSLPEAVQ 571


>gi|238922935|ref|YP_002936448.1| prolyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|259511596|sp|C4ZC24|SYP_EUBR3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238874607|gb|ACR74314.1| prolyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|291523823|emb|CBK89410.1| prolyl-tRNA synthetase, family I [Eubacterium rectale DSM 17629]
 gi|291528709|emb|CBK94295.1| prolyl-tRNA synthetase, family I [Eubacterium rectale M104/1]
          Length = 479

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 136/358 (37%), Gaps = 79/358 (22%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G  ++  +   RLA R        PT E +  ++F   ++S+R+LP  + Q    +
Sbjct: 97  WVTQGGLETLQE---RLAVR--------PTSETLFCELFSKTVQSHRDLPKVYNQWCSVV 145

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           ++    RP    +RS EFL ++ ++   T E ++    +M   Y                
Sbjct: 146 RWEKTTRP---FLRSSEFLWQEGHTVHATAEEAEARTVQMLNIY---------------- 186

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPY 256
                           AD      FC K ++  P +    TD +             A Y
Sbjct: 187 ----------------AD------FCEK-YLAIPMVKGRKTDKEKFAGAE-------ATY 216

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              + +H+ K   S              G    FG  +       +   D K  Y    S
Sbjct: 217 TIEALMHDGKALQS--------------GTSHNFGDGFPKAFGIQYTDKDNKLQYCHETS 262

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +G+ + R++ A+I    D  G++ P  +AP ++ +I I+       D    +  +LSK  
Sbjct: 263 WGV-STRLIGAIIMVHGDDSGLVLPPKIAPTQVMVIPIQQQKDGVLDKAYDLKDKLSK-D 320

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             V  D   +  G +FA  ++ G   ++ +G K +  ++  I  R T  +  +SL+EV
Sbjct: 321 FRVKIDATDKTPGWKFAAQEVQGISTRIEIGPKDIEKNQCVIVRRDTREKIVVSLDEV 378


>gi|227514102|ref|ZP_03944151.1| threonine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|227087473|gb|EEI22785.1| threonine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 634

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/407 (19%), Positives = 158/407 (38%), Gaps = 35/407 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   + +++   G   +  P L + D +  SG +D Y ++M    
Sbjct: 250 GLPYWMPKGSTIRRTIERYVIDKEVGDGYEHVYTPVLMNLDAYKTSGHWDHYREDMFPPM 309

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  ++   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 310 DMGDGELLELRPMNCPSHIQIYKHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 369

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 370 TLNDGHTF-VALDQIQDEFAKILKLIMDVYKDFNINDYTFR---------LSYR-----D 414

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ + + D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 415 PKNTEKYFANDEMWERSQSMLKAAMDSMGLDYYEAEGEAAFYGPKLDIQTKT---ALGND 471

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    K+ L     + G DGK H   M   G +G M    A +   +
Sbjct: 472 ETMSTIQLD----FMLPEKFDL----HYVGEDGKQHRPVMIHRGVVGTMERFVAYLTEIY 523

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++++I +   D+   D  + +             D   E++G +  
Sbjct: 524 KGAFPTW---LAPNQVNIIPVS--DEKHGDYADDLAREFRAAQLRTVVDHRSEKMGYKIR 578

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +     P  ++VG   V++  V ++      +  MS ++ ++   H
Sbjct: 579 ESQTQKVPYTLVVGEDEVANGTVSVRKYGEKDQVSMSKQDFLDLILH 625


>gi|26989188|ref|NP_744613.1| threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|38258320|sp|Q88K27|SYT_PSEPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24984027|gb|AAN68077.1|AE016439_12 threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|313499446|gb|ADR60812.1| ThrS [Pseudomonas putida BIRD-1]
          Length = 640

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 3/187 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R  Q   G  E+  P +    LW  SG + +Y +
Sbjct: 255 LQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENGYQEIKTPQVVDRILWERSGHWSNYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTSSESRDYAV-KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F+  DA+ F    +  K + + + ++ L ++   G   I M+  + P     S E 
Sbjct: 374 RVRGFVQDDAHIFCTEDQVKKEAADFIKLT-LDVYKDFGFSDIAMKLSTRPAKRVGSEEL 432

Query: 211 IVLADTG 217
              A+T 
Sbjct: 433 WDRAETA 439


>gi|308049557|ref|YP_003913123.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Ferrimonas
           balearica DSM 9799]
 gi|307631747|gb|ADN76049.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Ferrimonas
           balearica DSM 9799]
          Length = 644

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 6/177 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +R++ ++ G  E+  P +    +W  SG +D Y  E
Sbjct: 257 QEEAPGMVFWHNDGWTIYQELEGFMRKQLHKYGYEEVRTPLVMDKVMWERSGHWDKYS-E 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M+   +   +     P +      IF+  +KSYR+LP+   +  L  R+E      G+MR
Sbjct: 316 MIFATESEKRTYAVKPMNCPGHLQIFKQGLKSYRDLPYRMAEFGLVHRNEPSGSLHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            R F   DA+ F  T E                +   G + I ++  + P   IG D
Sbjct: 376 VRSFTQDDAHIF-CTEEQILDEVTSCIKMVYDTYKTFGFEEIEVKLSTRPEQRIGSD 431


>gi|305664329|ref|YP_003860617.1| prolyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378898|gb|ADM28737.1| prolyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 493

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG+  W+P G +   NV  IIR   N TG  E+  P L    L+  ES     +  E+L 
Sbjct: 36  KGMGIWMPYGFQIRRNVIEIIRNLLNETGHEEVLFPILIPEILFRRESEHVRGFEGEVLW 95

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +  D  ++  PT E  ++ +    IKSY+ LP  +YQ+   FR E +    ++R
Sbjct: 96  VTRGGNEELDVKLVLRPTSETAISYMESFWIKSYKQLPKKYYQVVSVFRYETKMTKPMIR 155

Query: 152 SREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            RE    K+A++     E S+    +    Y + F  LG+  I  R
Sbjct: 156 VREITTFKEAHTVHENFEDSERQVLEAIDIYSKFFDELGIPYIISR 201



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R I++G +   G  ++       +  D    Y    SYGI   RV+A++I    D  G+
Sbjct: 224 GRAIQIGTVHNLGQTFTSVFDVKIQKRDETIDYAWQTSYGISE-RVIASIIAIHSDDIGL 282

Query: 339 IWPDSVAPFKISLINIKAHD----QVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFA 393
           I P +VAP+ + +I I   D    Q   + C  I+  L         D+ +  +   ++ 
Sbjct: 283 ILPSNVAPYTVVIIPIPHQDEKIYQSIINYCNDIHNILKVNNIRSLIDERLDVKPAEKYR 342

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +L G P+++ +G K VS + V +  R    R  ++ +E+I+
Sbjct: 343 ECELKGVPIRIEIGFKEVSQNTVTLFRRDLRKRFTINKDELIS 385


>gi|218886086|ref|YP_002435407.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226701453|sp|B8DPN2|SYT_DESVM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218757040|gb|ACL07939.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 644

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 2/127 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      +   +R+E  + G   +  P L   ++W +SG YD+Y +E + 
Sbjct: 259 APGMVYWHPKGMLLRTILEDFLRKEHLKRGYELVQGPQLLRREVWEKSGHYDNY-RENMY 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +D A    P +      I++SH++SYR+LP   +++ +  R E      G++R R+
Sbjct: 318 FTVIDDNAYGVKPMNCVSHMLIYKSHLRSYRDLPRRMFELGVVHRHEKSGVLHGLLRVRQ 377

Query: 155 FLMKDAY 161
           F   DA+
Sbjct: 378 FTQDDAH 384


>gi|167422088|ref|ZP_02313841.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|166958900|gb|EDR55921.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
          Length = 369

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 129/358 (36%), Gaps = 42/358 (11%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P +    LW ++G +++Y + M   +  N +  I  P +      IF   +KSYR+
Sbjct: 19  EVKGPFMMDRVLWEKTGHWENYAEHMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRD 77

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    +     R+E      G+MR R F   DA+ F  T E  +   N        ++ 
Sbjct: 78  LPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQVRDEVNSCIKMVYDMYS 136

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G + I ++  + P     S E    A+                 P E   +   I   
Sbjct: 137 TFGFEKIVVKLSTRPEKRIGSDELWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIEFT 196

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG 304
                               L D L        R  + G +      +SLP  +SA++ G
Sbjct: 197 --------------------LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYIG 226

Query: 305 ADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +       M    I G+M     ++   + G    +P  +AP ++ ++NI        D
Sbjct: 227 ENNDRQVPVMIHRAILGSMERFIGILTEEYAG---FFPTWLAPVQVVVMNITDSQS---D 280

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 281 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 338


>gi|317503053|ref|ZP_07961132.1| threonine--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315665826|gb|EFV05414.1| threonine--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 649

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 149/418 (35%), Gaps = 69/418 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G +    +  ++R         E+  P +    L+V SG Y  YGK+  + 
Sbjct: 263 KGLPIWLPKGTQLRLRLQKLLRSLLRPYHYQEVITPGIGGKSLYVTSGHYAHYGKDAFQP 322

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                 D+  +  P +     +++    +SY++LP    +    FR E      G+ R R
Sbjct: 323 IHTPEEDEEYMLKPMNCPHHCEVYARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F + P+  K  +       L++F      +   +              I L
Sbjct: 383 TFTQDDAHIF-VRPDQVKSEFETNIDIILKVFKTFHFDNYEAQ--------------ISL 427

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  + + +   D                       E W     A  +   EK   +  E
Sbjct: 428 RDPKDKEKYIGSD-----------------------EIWEESENAIREACKEKGLVAHEE 464

Query: 274 NKRVSARGIE--------VGHIFYFGT---KYSLPMSATFK-----GADGKDHYVQMGSY 317
               +  G +        +G  +  GT    Y+LP  A FK       + K   V +   
Sbjct: 465 IGEAAFYGPKLDFMVKDAIGRKWQLGTIQVDYNLP--ARFKLEYTAEDNTKKTPVMIHRA 522

Query: 318 GIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G++    AV+     G   +W  PD VA   IS        +   D  +++      V
Sbjct: 523 PFGSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAKQVGQYFDTV 574

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G     DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M +EE
Sbjct: 575 GVRSVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEAAEGLVSMRKQGGGEQATMKMEE 632


>gi|15644753|ref|NP_206923.1| threonyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|2501057|sp|P56071|SYT_HELPY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2313207|gb|AAD07192.1| threonyl-tRNA synthetase (thrS) [Helicobacter pylori 26695]
          Length = 612

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|75764566|ref|ZP_00744025.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487945|gb|EAO51702.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 445

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 59  LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 118

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 119 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 177

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 178 LNGLLRVRTFCQDDAHLF-VTPK 199


>gi|242398996|ref|YP_002994420.1| Prolyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|242265389|gb|ACS90071.1| Prolyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 488

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G + ++   ++     T++  +G   YV   ++G+   R+VAA++    D  G+
Sbjct: 228 GRTLQIGTMHHYKQNFAKAYEITYETEEGTHEYVHQTTFGMSE-RLVAAIMGVHGDDSGL 286

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           + P ++AP ++ +I I  K          ++I   L   G  +  DD  + + G +F   
Sbjct: 287 VLPPTIAPVQVVVIPIPMKESPYDVNAYAKEIAEELKTAGLRIHVDDREDVRPGRKFYDW 346

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ++ G PL++ VG K V +++     R T
Sbjct: 347 EIKGVPLRIEVGPKDVEENQAVFARRDT 374



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  WLP G + + N+  +I  E  RTG  E+  P L   ++   E+     +  E+L 
Sbjct: 40  KGMNVWLPYGLRIMRNIENLIHMEMVRTGHNEVLFPALIPESEFEREAEHIAGFHGEVLW 99

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    ++ +    I  PT E  M  +F   I+S+ +LPF  YQI   +R E +    ++R
Sbjct: 100 VTHAGERPLDVKLILRPTSETAMYPMFNLWIRSHADLPFKIYQIVNVYRYETKHTRPLIR 159

Query: 152 SREF 155
            RE 
Sbjct: 160 VREI 163


>gi|229150586|ref|ZP_04278801.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228632895|gb|EEK89509.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|206901980|ref|YP_002250545.1| prolyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206741083|gb|ACI20141.1| prolyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 480

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 14/192 (7%)

Query: 255 PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           P  A     NEK   +L     E      R ++ G     G  ++      F+  DG+  
Sbjct: 195 PVIAGRKTENEKFAGALHTYSIEVLLADGRALQAGTSHNLGQHFAKAFDIMFQDVDGERK 254

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEK 367
           YV   S+G+ + R++ A+I +  D  G++ P  VAP++I +I I   +       +  ++
Sbjct: 255 YVWQTSWGV-STRLIGALIMTHGDDYGLVLPPRVAPYQIVIIPIWKSETDKTKVYNYVDE 313

Query: 368 IYARLSK---VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           IY  L K   V  D    D     G +F   +L G P++V +G K V   ++ +  R   
Sbjct: 314 IYEVLRKYFRVKVD---KDEEHTPGWKFNEWELKGVPVRVEIGPKEVEKQELYVARRDLR 370

Query: 425 IREDMSLEEVIN 436
           I+  +  E ++ 
Sbjct: 371 IKMSIKRENMVQ 382



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            K F+  L     D      +++L+  ++ +   KG     P G    +N+  I+ E+  
Sbjct: 2   EKKFVEELTSQKEDFSKWYTEVVLKADLVDYSPVKGCMVIKPYGYAIWENMQRILDEKIK 61

Query: 63  RTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDI 117
            TG +    P  +  + L  E+   + +  ++  +    D+ +       PT E ++  +
Sbjct: 62  ATGHVNAYFPLFIPKSFLEKEAEHVEGFSPQVAWVTKGGDEELFEPLAVRPTSEAIICSM 121

Query: 118 FRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +   I+S+R+LP    Q    +++  E RP    +R+ EFL ++ ++   T E ++    
Sbjct: 122 YSKWIQSWRDLPVLINQWANVVRWEKETRP---FLRTTEFLWQEGHTAHRTFEEAEEEAL 178

Query: 176 KMFVSY 181
           +M   Y
Sbjct: 179 RMLNVY 184


>gi|78222623|ref|YP_384370.1| threonyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|78193878|gb|ABB31645.1| Ser-tRNA(Thr) hydrolase [Geobacter metallireducens GS-15]
          Length = 645

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   W P G      +    R+E  + G   +  P +   DLW  SG YD+Y +E +   
Sbjct: 272 GFVIWHPNGAMLRTILEDFERKEHLKRGYDIVVGPQILKTDLWQRSGHYDNY-RENMYFT 330

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  +++    P +      I++SH++SYR+LP  F+++    R E      G++R R F 
Sbjct: 331 EVEEQSFGIKPMNCLSHMMIYKSHLRSYRDLPLRFFELGTVHRHERAGVLHGLLRVRCFT 390

Query: 157 MKDAYSFDLTPE 168
             DA+    TPE
Sbjct: 391 QDDAHIL-CTPE 401


>gi|332287873|ref|YP_004422774.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|313848445|emb|CBY17449.1| threonyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506736|gb|ADZ18374.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328915135|gb|AEB55968.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 635

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 160/430 (37%), Gaps = 54/430 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  +   KL L +    + S G+  + P G    D +    +      G  E+  P L 
Sbjct: 236 RDHRVLGTKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRLHQLAGYKEIQTPQLM 293

Query: 76  SADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           +  LW  SG + +Y + M  L  D  D A+   P +       +++ + SY+  P    +
Sbjct: 294 NRSLWEVSGHWSNYRENMYTLKIDDEDYAI--KPMNCPGCMLYYKTRLHSYKQFPLRIAE 351

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-- 191
           I    R E+     G+MR R F   DA+ F LTPE  +     +      ++   GL+  
Sbjct: 352 IGHVHRYEVSGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILHLVSELYSTFGLEYH 410

Query: 192 -SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             +  R E   IG D   E    A             ++  + + NT F  II+      
Sbjct: 411 LELSTRPEKATIGSDELWELATAA-------------LERALINSNTPF--IINPGD--- 452

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG 307
              A Y    D+H           K    R  + G I    +   ++ L     +  A G
Sbjct: 453 --GAFYGPKIDIH----------VKDAIQRTWQCGTIQLDMFLPERFEL----EYTNAQG 496

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   V +     G++     ++     G+  +W   ++P  I LI +    Q      +
Sbjct: 497 EKSTPVMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHIRLITVADRHQ---PRAQ 550

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+     K+G  V  DD  E +  +   A  +     V +G + +  + + I+ R   + 
Sbjct: 551 KLATAWQKLGLIVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEQNTLAIRTRDNRVL 610

Query: 427 EDMSLEEVIN 436
            DM+ ++ IN
Sbjct: 611 NDMTEDKFIN 620


>gi|52078698|ref|YP_077489.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52784060|ref|YP_089889.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52001909|gb|AAU21851.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346562|gb|AAU39196.1| ThrZ [Bacillus licheniformis ATCC 14580]
          Length = 639

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP GQ     +  + RE QN     E+  P + +  LW +SG +D Y 
Sbjct: 258 MFSEEAPGMPFYLPKGQIVRKELEKLSRELQNNASYDEVHTPFMMNYRLWEKSGHWDHY- 316

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           +E +  ++ ++      P +      IF++++ SYR+LP    +     R E      G+
Sbjct: 317 QENMYFSEVDNTKFAIKPMNCPGHMLIFKNNLYSYRDLPIRLAEYGQVHRHEFSGSLNGL 376

Query: 150 MRSREFLMKDAYSF 163
           +R R F   DA+ F
Sbjct: 377 LRVRTFCQDDAHIF 390


>gi|167648480|ref|YP_001686143.1| threonyl-tRNA synthetase [Caulobacter sp. K31]
 gi|189083602|sp|B0T0Z7|SYT_CAUSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167350910|gb|ABZ73645.1| threonyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 659

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 4/161 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +  KG+  W P G      + A +R   +  G  E+  P +    LW  SG  + +G 
Sbjct: 262 IQEEGKGMVFWHPKGWTLYLALEAYMRRRLDAAGYREVKTPQILDKSLWERSGHAEKFGH 321

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M        + +   P +      IF    KSYR LP    +     R E      G+M
Sbjct: 322 AMFMCESAEGEVLAVKPMNCPGHIQIFNVGQKSYRELPLRMAEFGACHRYEPSGAMHGIM 381

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGL 190
           R R F   DA+ F    + ++ S    F+  LR ++  LG+
Sbjct: 382 RVRAFTQDDAHIFCREEQVTEESAR--FIELLRSVYSDLGM 420


>gi|30020454|ref|NP_832085.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|229127762|ref|ZP_04256751.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|29896005|gb|AAP09286.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|228655839|gb|EEL11688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|229161333|ref|ZP_04289318.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228622147|gb|EEK78988.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 639

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +R  Q      E+  P + + +LW +SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLRGIQKEYNYQEVRTPFMMNQELWEKSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|222056447|ref|YP_002538809.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221565736|gb|ACM21708.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 645

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 153/386 (39%), Gaps = 39/386 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R E  +     +  P +   DLW  SG YD+Y +E +   
Sbjct: 272 GLVIWHPKGAMLRTIIEDFERREHLKRDYDIVVGPQILKTDLWQRSGHYDNY-RENMYFT 330

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++++    P +      I++S ++SYR+LP   +++    R E      G++R R F 
Sbjct: 331 EVDEQSFGIKPMNCLSHMMIYKSRLRSYRDLPLRLFELGTVHRHERAGVLHGLLRVRCFT 390

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+    TPE    S  K  +S+++                  + G    EF +   T
Sbjct: 391 QDDAHIL-CTPE-QLDSEIKGVISFVQ-----------------DVMGVFGFEFEMELST 431

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   S +  D    +      D      I E   A Y    D+   KL DSL  ++R
Sbjct: 432 RPEKSIGSDEDWDRATNALLGALKDSGRPFEINEGDGAFYGPKIDI---KLRDSL--DRR 486

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                I+    F    ++ L    T+  ADG K   V +    +G++     V+     G
Sbjct: 487 WQCATIQCD--FTLPERFDL----TYIDADGEKKRPVMVHRVILGSIERFIGVLIEHFAG 540

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
              +W   ++P ++ ++ +   +Q+     +++YA L   G  V  D   E++G +   A
Sbjct: 541 SFPVW---LSPVQVVVLTV-TDNQLS--FAQQVYAELRAAGLRVQQDFRNEKLGFKIREA 594

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
            L   P  +++G K V    V  + R
Sbjct: 595 QLQKIPYMLVIGDKEVEAGMVTPRFR 620


>gi|228958638|ref|ZP_04120356.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228801059|gb|EEM47958.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|312875562|ref|ZP_07735563.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|311088816|gb|EFQ47259.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 643

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 162/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M +          DD+       E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFNL----SYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N  AH +  ++  ++    L K+G     D   E++G +
Sbjct: 533 KGAFPTW---LAPLQVKIIPVNNDAHGEYAQNVKDQ----LMKLGFRAEVDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              A     P  +++G   +  + V ++   +  +E  +L E ++  S
Sbjct: 586 IREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKALSEFVSELS 633


>gi|217031884|ref|ZP_03437386.1| hypothetical protein HPB128_3g3 [Helicobacter pylori B128]
 gi|298736935|ref|YP_003729465.1| threonyl-tRNA synthetase [Helicobacter pylori B8]
 gi|216946353|gb|EEC24958.1| hypothetical protein HPB128_3g3 [Helicobacter pylori B128]
 gi|298356129|emb|CBI67001.1| threonyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 612

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|210134324|ref|YP_002300763.1| threonyl-tRNA synthetase [Helicobacter pylori P12]
 gi|238065114|sp|B6JPM2|SYT_HELP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|210132292|gb|ACJ07283.1| threonyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 612

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|196000905|ref|XP_002110320.1| hypothetical protein TRIADDRAFT_22327 [Trichoplax adhaerens]
 gi|190586271|gb|EDV26324.1| hypothetical protein TRIADDRAFT_22327 [Trichoplax adhaerens]
          Length = 603

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---- 98
           LP G + ++ +   +++E    G  E+  P   + +LWV+SG +D Y  +M RL      
Sbjct: 261 LPHGLRIINKLKNFLKDEYRVRGYHEVETPLTFNQELWVQSGHWDHYSDDMFRLQSDPQD 320

Query: 99  -RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             N  ++   P +      IF +   SYR+LP    +     RDE      G+ R R+F 
Sbjct: 321 HENRGSISLKPMNCPGHCLIFGNERHSYRDLPVRLAEFSALHRDEPSGSLGGLTRLRQFH 380

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 381 QDDAHIF 387


>gi|126725645|ref|ZP_01741487.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704849|gb|EBA03940.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 649

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/399 (20%), Positives = 140/399 (35%), Gaps = 50/399 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G +    +   +R +Q   G +E++ P +    LW  SG ++ Y +
Sbjct: 261 MQEEAPGQVFWHPNGWRIYTTLQDFMRRKQVAGGYVEVNTPQVVDRKLWEASGHWEKYQE 320

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 321 NMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNVGLKSYRDLPIRMAEFGSCNRYEPSGA 380

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   D + F    E        +++ +L  I+  LG ++  ++    P   
Sbjct: 381 LHGIMRVRGFTQDDGHIF--CEESQIEEETAIYIEFLTSIYKDLGFENFRVKFSDRPEVR 438

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAATSD 261
             S E    A+T       +        P E   +    + +  ++I   W         
Sbjct: 439 AGSDEVWDRAETALLNATRAAGIEPEMNPGEGAFYGPKLEFVLTDAIGRDWQCGTHQVDF 498

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG 320
           V        LPE                        + A + G DG  H  V +    +G
Sbjct: 499 V--------LPER-----------------------LDANYVGQDGAKHRPVMLHRATLG 527

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   H GK   W   +AP ++ + +I        D  +++ A L   G    
Sbjct: 528 SFERFIGILIEEHAGKLPFW---LAPRQVVVASIVTD---ANDYAQEVVAELRAAGVLAE 581

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D   E+I  +     L   P+ + VG K V++  V ++
Sbjct: 582 ADIRNEKINYKVREHSLGKVPVILAVGMKEVAERTVSVR 620


>gi|110679173|ref|YP_682180.1| threonyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|123362019|sp|Q168U9|SYT_ROSDO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109455289|gb|ABG31494.1| threonyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 648

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 150/404 (37%), Gaps = 60/404 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G  E++ P +    LW  SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPNGWSIYTTLQDYMRRKQRAAGYQEVNTPQVVDRKLWEASGHWDKYQE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 HMFIVEVDEDHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   D ++F    E    +    F++YL  ++  LG +             
Sbjct: 380 LHGIMRVRGFTQDDGHTF--CREDQIEAECAAFITYLSSVYQDLGFEKFE---------- 427

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                 I+ A   E +V   + +       EN            ++    PY  T D   
Sbjct: 428 ------IMFATRPEKRVGSEESWDHVEAALENA-----------IKATGHPY--TLDEGE 468

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQM------GS 316
              +    + K   A G E      F    +LP  + AT+ G DG  H   M      GS
Sbjct: 469 GAFYGPKLDFKLTDAIGRE-WQCGTFQVDPNLPERLDATYIGQDGAKHRPYMLHRACLGS 527

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           +     R +  +IE+S  GK   W   +AP ++ + +I +  D    +  EK+ A   + 
Sbjct: 528 F----ERFIGILIENSA-GKLPFW---LAPRQVVVASIISDADDYVLEVVEKLQAAGVRA 579

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             DV      E+I  +     +   P+ + VG++ V +  V ++
Sbjct: 580 EADV----RNEKINYKVREHSVGKVPVILAVGAREVEEKTVTLR 619


>gi|116630042|ref|YP_815214.1| threonyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238853770|ref|ZP_04644136.1| threonine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282851336|ref|ZP_06260701.1| threonine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311110329|ref|ZP_07711726.1| threonine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273021|sp|Q041U6|SYT_LACGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116095624|gb|ABJ60776.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactobacillus
           gasseri ATCC 33323]
 gi|238833579|gb|EEQ25850.1| threonine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282557304|gb|EFB62901.1| threonine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311065483|gb|EFQ45823.1| threonine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 643

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 160/404 (39%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I +++   G   +  P L + D +  SG +  Y  +M    
Sbjct: 259 GLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQIREEFAKVLKLIMDVYKDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYYANDEMWEKSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH        +K+   L+K G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNEEAHGAY----ADKVREELAKRGFRAEVDHRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              +     P  +++G   ++ + V ++   T  +   SL++ I
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNANGVNVRRYGTEEQISKSLDDFI 629


>gi|258647248|ref|ZP_05734717.1| proline--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260852895|gb|EEX72764.1| proline--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 494

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      +   D +  Y    S+G+ + R++ A+I +  D  G+
Sbjct: 236 GKALQNGTSHFLGQNFAKAFGVQYVDKDNQLQYPWATSFGV-STRMMGALIMTHSDDNGL 294

Query: 339 IWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I  ++   Q   +  E I + L   G  V +D+   ++ G +FA 
Sbjct: 295 VLPPHLAPIQVVIVPIYKNNEELQKLDERLEAIASTLRGKGIRVKYDNADNKRPGFKFAD 354

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +L G P+++++G + + +  +E+  R T  +E + +E +  Y
Sbjct: 355 YELKGVPVRLVMGGRDLQNGTIELMRRDTLEKETLQVEGIEEY 397


>gi|87309081|ref|ZP_01091218.1| threonyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87288072|gb|EAQ79969.1| threonyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 668

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 155/411 (37%), Gaps = 47/411 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML- 94
            +G+  WLP G      +   + E+  +     +  P +   DL+  SG Y  Y      
Sbjct: 263 GQGLILWLPKGAVVRQQLTDFVSEQLKKHEYESVFTPNIGKVDLYKTSGHYPYYKDSQFP 322

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            +   +D+  +  P +      I+++  +SYR LP    +    +R E      G+ R R
Sbjct: 323 PIHVSDDEEYLLKPMNCPHHIMIYKNRPRSYRELPVRLSEFGTVYRYEQSGELNGMTRVR 382

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIV 212
            F   DA+ F +  E  +  + K       + + LGL    +R     P  G       V
Sbjct: 383 GFCQDDAHIFCME-EQVEEEFRKCIEMTQYVLNSLGLTDYRVRLGFRDPDNGKYVGNSKV 441

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSD-VHNEKLFDS 270
                ++ V   K+                + ++++ E   A  Y   +D V N+ L   
Sbjct: 442 WDRAEQSLVSVCKN----------------MGIDAVAEAGEAAFYGPKADFVVNDCL--- 482

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHY-VQMGSYGIGAMRVV 325
                    R  ++G +      Y+LP +  F     GAD + H  V +     G++   
Sbjct: 483 --------GREWQLGTV---QLDYNLPSTERFALEYVGADNQMHRPVMIHRAPFGSLERF 531

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             V+     G   +W   +AP ++ ++ +    Q   +   K+ A L + G  V  D   
Sbjct: 532 MGVLIEHFAGAFPLW---LAPEQVRVLVV---SQKFEEYARKVEAELKQAGFRVKGDYRP 585

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E+IGS+   A L   P   ++G + +    V ++ R+ G    M + E I+
Sbjct: 586 EKIGSKIRDAQLELIPYMFVIGGREMETESVAVRDRIDGDLGSMKVAEAID 636


>gi|259500519|ref|ZP_05743421.1| threonine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|302191209|ref|ZP_07267463.1| threonyl-tRNA synthetase [Lactobacillus iners AB-1]
 gi|309807138|ref|ZP_07701115.1| threonine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|309810241|ref|ZP_07704086.1| threonine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|259167903|gb|EEW52398.1| threonine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|308166489|gb|EFO68691.1| threonine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308169513|gb|EFO71561.1| threonine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
          Length = 643

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 162/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M +          DD+       E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFNL----SYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N  AH +  ++  ++    L K+G     D   E++G +
Sbjct: 533 KGAFPTW---LAPLQVKIIPVNNDAHGEYAQNVKDQ----LMKLGFRAEVDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              A     P  +++G   +  + V ++   +  +E  +L E ++  S
Sbjct: 586 IREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKALSEFVSELS 633


>gi|296502926|ref|YP_003664626.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|296323978|gb|ADH06906.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|205373424|ref|ZP_03226228.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 84

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +Y +L   G +V  DD  E+ G +F  +DL+G P++V VG K  S+  VE K R TG 
Sbjct: 9   EDLYNQLKDQGLEVLLDDRIERAGVKFNDSDLIGIPVRVTVG-KQASEGNVECKDRRTGE 67

Query: 426 REDMSLEEVINY 437
            +D+S+EE+ +Y
Sbjct: 68  SKDVSIEELSSY 79


>gi|87124051|ref|ZP_01079901.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86168620|gb|EAQ69877.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 612

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/433 (20%), Positives = 159/433 (36%), Gaps = 93/433 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEDFWRQAHFEGGYDLLYTPHVADIGLWKTSGHLDFYSESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 QVDEREYQLKPMNCPFHVLTYASRLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ F L PE                                     +S E + + +
Sbjct: 348 TQDDAHVFCL-PE------------------------------------QISDEILRILN 370

Query: 216 TGETQVFCSKDFMDFPIP----SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             ET +  + DF ++ I      E +  DD                A  D+  + L ++L
Sbjct: 371 LTET-ILSAFDFRNYEINLSTRPEKSIGDD----------------AVWDLATQGLIEAL 413

Query: 272 PENKRVSARGIEVGHIFYFGTK---------------------YSLP--MSATFKGADGK 308
              ++  A  ++ G   ++G K                     ++LP   +  +  ADG 
Sbjct: 414 --ERKGWAYKVDAGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFALDYVAADGS 471

Query: 309 DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                M    I G++     ++  ++ G    W   +AP +I L+ +   D+V  DA ++
Sbjct: 472 KQRPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT--DEVLADA-QQ 525

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L   G     D  GE++G      + +  PL  ++G+K      V ++ R  G   
Sbjct: 526 LSDQLRAAGIRATVDRSGERLGKLIRTGEQMKIPLLAVIGAKEAEQGSVSLRSRRDGDLG 585

Query: 428 DMSLEEVINYASH 440
            ++ + +I  AS 
Sbjct: 586 SVNRKALIEAASQ 598


>gi|108562547|ref|YP_626863.1| threonyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|123247050|sp|Q1CV33|SYT_HELPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|107836320|gb|ABF84189.1| threonyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 612

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|160895412|ref|ZP_02076181.1| hypothetical protein CLOL250_02969 [Clostridium sp. L2-50]
 gi|156862914|gb|EDO56345.1| hypothetical protein CLOL250_02969 [Clostridium sp. L2-50]
          Length = 478

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +  A+ K  YV   S+G+ + R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFGVQYTDANNKLQYVHQTSWGM-STRIIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ +I I    +   +  +++ A LS+    V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPRIAPTQVMIIPINQKKEGVLEKAQEVKAALSE-KFTVKLDDSNKNPGWKFSEQEMR 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ +G K +   +  I  R    +  +SL+ +
Sbjct: 343 GIPVRIEIGPKDIEAGQAVIVRRDNREKTVVSLDNI 378


>gi|144899402|emb|CAM76266.1| Threonyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 638

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W   G      V + +R         E+  P L    LW  SG  D + +
Sbjct: 257 LQEEAVGAVFWHQKGWALYRTVESYMRNRLEAENYQEVKTPQLVDFSLWEASGHADKFSE 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  +  ++++ +   P +      IFR  IKSYR+LP    +     R E      G+M
Sbjct: 317 SMFTIKTQDERHLAVKPMNCPCHVQIFRQGIKSYRDLPLRMAEFGSCHRYEPSGALHGIM 376

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 377 RVRAFTQDDAHIF 389


>gi|285017864|ref|YP_003375575.1| threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473082|emb|CBA15587.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Xanthomonas albilineans]
          Length = 634

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/441 (19%), Positives = 162/441 (36%), Gaps = 53/441 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD    +  L L    + +   G+  W P G      V   +R+     G
Sbjct: 232 YILRMEEADKRDHRKIAKALDLFH--LQEEGPGLVFWHPKGWSIWQVVEQYMRKVYRDNG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQQSGHWDNYQDNMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T +  +          L++
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHIF-CTEQQIEAEVTAFHRQALKV 407

Query: 185 FHRLGLKSIPMRAESGP---IGGDLS---HEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +   G   I ++    P   +G D +    E  + A  G     C  ++ + P       
Sbjct: 408 YTDFGFDDIQIKIALRPEKRLGEDATWDKAEAALRAALGA----CGVEWQELPGEG---- 459

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                          A Y    + H   L D++    ++    ++       G +Y    
Sbjct: 460 ---------------AFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLGAEYVDEH 501

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           S        K H V +    +G+M     ++   H G   ++P  +AP +  ++NI    
Sbjct: 502 SQ-------KRHPVMLHRAIVGSMERFIGILIEHHAG---VFPAWLAPVQAMVMNITDAQ 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+  K+   L+  G  +  D   E+IG +     L   P  ++VG +   +  + +
Sbjct: 552 ADYVDSVRKL---LANQGFRIEADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAIAV 608

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           + R +G  ED+    V ++A 
Sbjct: 609 RTR-SG--EDLGTMSVADFAE 626


>gi|302552824|ref|ZP_07305166.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302470442|gb|EFL33535.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 416

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   +RE + R G   +  P L   +L+  SG +D Y ++M    
Sbjct: 33  GLPYWLPDGAIVRHTLEEYVREAERRAGYRHVYSPVLGKRELYEISGHWDHYSEDMFPPM 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   + ++  P+       I+RS   SYR LP    ++   +R EL     G+ R R   
Sbjct: 93  ELGAEQVLLRPSLCPHHALIYRSRSHSYRELPLRMAELGGMYRSELSGVLGGLTRVRAIT 152

Query: 157 MKDAYSF 163
           + DA+ F
Sbjct: 153 LNDAHIF 159


>gi|229044114|ref|ZP_04191800.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229109806|ref|ZP_04239391.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228673651|gb|EEL28910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228725227|gb|EEL76498.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|229144961|ref|ZP_04273357.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228638483|gb|EEK94917.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|240143521|ref|ZP_04742122.1| threonine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257204557|gb|EEV02842.1| threonine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291540396|emb|CBL13507.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Roseburia
           intestinalis XB6B4]
          Length = 591

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I+ ++ + G + +  P + + +L+  SG +D Y + M   
Sbjct: 201 RGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPCVGTVNLYKTSGHWDHYKENMFPA 260

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ + + SY++LP    +I   FR E      G+ R R F
Sbjct: 261 MEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIGEIAHDFRFEASGTLKGIERGRHF 320

Query: 156 LMKDAYSFDLTPEGSKHSYNKM 177
              DA+ F +TPE  +  + K+
Sbjct: 321 CQNDAHLF-VTPEQIESEFAKV 341


>gi|328947096|ref|YP_004364433.1| threonyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447420|gb|AEB13136.1| threonyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 585

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G      +   +RE+  + G +E++ P +    LW  SG +  Y K M  + +   
Sbjct: 206 WHPNGWTMYVTLQDYMREKIRKDGYMEVNTPAIMPRSLWERSGHWGHYQKNMF-VTESEK 264

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           +     P +     +IF S ++SY++LP    +     R+E      G+MR R F+  DA
Sbjct: 265 RMFAIKPMNCPGALEIFNSRVRSYKDLPLRLAEFGHCVRNEPSGTLHGIMRVRGFVQDDA 324

Query: 161 Y 161
           +
Sbjct: 325 H 325


>gi|317008795|gb|ADU79375.1| threonyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 612

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|309803316|ref|ZP_07697413.1| threonine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|308164824|gb|EFO67074.1| threonine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
          Length = 643

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 162/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M +          DD+       E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFNL----SYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N  AH +  ++  ++    L K+G     D   E++G +
Sbjct: 533 KGAFPTW---LAPLQVKIIPVNNDAHGEYAQNVKDQ----LMKLGFRAEVDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              A     P  +++G   +  + V ++   +  +E  +L E ++  S
Sbjct: 586 IREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKALSEFVSELS 633


>gi|302389804|ref|YP_003825625.1| prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200432|gb|ADL08002.1| prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 479

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S     TF   DGK  YV   S+G+ + R++ A+I +  D +G+
Sbjct: 223 GKALQAGTSHNLGQHFSKVFDITFLDQDGKLKYVWQTSWGV-STRLIGAIIMTHGDDRGL 281

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
             P  VAP ++ ++ I     +   +    +Y  L      V  DD  E   G +F   +
Sbjct: 282 KLPPRVAPIQVVIVPIFGQQKEEILEKSRSLYQTLKNNNFRVELDDRDEYTPGWKFNEWE 341

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + G P+++ +G K ++ ++V +  R TG +  +   ++I Y +
Sbjct: 342 MKGVPVRLEIGPKDLAQNQVLLVRRDTGEKISVKEADLIPYLT 384


>gi|261838989|gb|ACX98754.1| threonyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 612

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|300361194|ref|ZP_07057371.1| threonine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300353813|gb|EFJ69684.1| threonine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 643

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 160/404 (39%), Gaps = 39/404 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      V   I +++   G   +  P L + D +  SG +  Y  +M    
Sbjct: 259 GLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQIREEFAKVLKLIMDVYKDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYYANDEMWEKSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    T+ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFGL----TYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N +AH        +K+   L+K G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNEEAHGAY----ADKVREELAKRGFRAEVDHRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              +     P  +++G   ++ + V ++   T  +   SL++ I
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNANGVNVRRYGTEEQISKSLDDFI 629


>gi|312871712|ref|ZP_07731800.1| threonine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872982|ref|ZP_07733042.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312874225|ref|ZP_07734259.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|315653646|ref|ZP_07906566.1| threonine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|325912186|ref|ZP_08174584.1| threonine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|329920107|ref|ZP_08276938.1| threonine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|311090295|gb|EFQ48705.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311091504|gb|EFQ49888.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092654|gb|EFQ51010.1| threonine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|315489008|gb|EFU78650.1| threonine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|325476136|gb|EGC79304.1| threonine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|328936561|gb|EGG33005.1| threonine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 643

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 162/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M +          DD+       E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFNL----SYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N  AH +  ++  ++    L K+G     D   E++G +
Sbjct: 533 KGAFPTW---LAPLQVKIIPVNNDAHGEYAQNVKDQ----LMKLGFRAEVDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              A     P  +++G   +  + V ++   +  +E  +L E ++  S
Sbjct: 586 IREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKALSEFVSELS 633


>gi|218897336|ref|YP_002445747.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218542902|gb|ACK95296.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|228965357|ref|ZP_04126449.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794347|gb|EEM41861.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|170016922|ref|YP_001727841.1| threonyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|238688955|sp|B1MXZ5|SYT_LEUCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169803779|gb|ACA82397.1| Threonyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 653

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 153/393 (38%), Gaps = 48/393 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   I +++   G   +  P L + +L+  SG +D Y ++M    
Sbjct: 266 GLPVWLPNGATIRRQVERYIIDKELANGYQHVYTPVLSNLNLYKTSGHWDHYREDMFPPM 325

Query: 98  DRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  +   +       P+H  +M  +F    +SYR LP    ++ +  R E      G+ R
Sbjct: 326 DMGEGEFLELRPMNCPSH--IM--VFNHKPRSYRELPIRIAELGMMHRYEKSGALTGLSR 381

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE  + D ++F + PE  +  +  +    + ++    +     R         LS+   
Sbjct: 382 VREMTLNDGHTF-VEPEKLEEEFKSILTMMMGVYRDFNITDYRFR---------LSYR-- 429

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDS 270
              D   T+ +   D M     ++     D + L+    E   A Y    DV  +    +
Sbjct: 430 ---DPENTEKYFDDDDMWEKSQAQLKRAMDDLKLDYYEAEGEAAFYGPKLDVQTKT---A 483

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAV 328
           L   + +S   ++    F    +++L    T+ GADG+D++  V +    +G M    A 
Sbjct: 484 LGSEETMSTIQLD----FLLPERFNL----TYIGADGQDNHRPVMLHRGIVGTMERFTAY 535

Query: 329 IESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +   + G    W   ++P ++ +I  N+ AH     D    I A+L   G     +    
Sbjct: 536 LIEMYKGAFPTW---LSPLQVQIIPVNLGAHGDYAND----IQAQLQAAGLRAHVETKDA 588

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           ++G     A     P  +++G   V    V ++
Sbjct: 589 KMGYLIREAQTNKIPYTLVLGDSEVDGQTVTVR 621


>gi|1565235|emb|CAB02510.1| Threonyl tRNA Synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 601

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP GQ   + +    RE Q   G  E+  P + +  LW +SG +D Y 
Sbjct: 220 MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGYDEVRTPFMMNQRLWEQSGHWDHY- 278

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++ +  ++ +D      P +      IF++ + SYR+LP    +     R E      G+
Sbjct: 279 RDNMYFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYRDLPIRMAEFGQVHRHEYSGALNGM 338

Query: 150 MRSREFLMKDAYSF 163
           +R R F   DA+ F
Sbjct: 339 LRVRTFCQDDAHIF 352


>gi|332672963|gb|AEE69780.1| threonine--tRNA ligase [Helicobacter pylori 83]
          Length = 612

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|262044121|ref|ZP_06017196.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038520|gb|EEW39716.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 622

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 151/411 (36%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 355 RVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 413

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  E  +  + +  + P   +  +               A Y    +     L
Sbjct: 414 ------WDRAEADLAVALEENNIPFEYQLGE--------------GAFYGPKIEF---TL 450

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      +SLP  +SA + G + +     M    I G++  
Sbjct: 451 YDCLD-------RAWQCGTV---QLDFSLPQRLSAFYVGENNERQVPVMIHRAILGSLER 500

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    +P  +AP ++ ++NI        +   ++  +L   G  V  D  
Sbjct: 501 FIGILTEEFAG---FFPTWIAPVQVVVMNITDSQA---EYVNELTRKLQNAGIRVKADLR 554

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E+IG +     L   P  ++ G K V   KV ++ R       M   EVI
Sbjct: 555 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDENEVI 605


>gi|153002179|ref|YP_001367860.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS185]
 gi|151366797|gb|ABS09797.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS185]
          Length = 398

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            + G+  W P G     ++   IR    R G  E++ P     +LW  SG  D + + M 
Sbjct: 19  QAPGMIFWHPNGWALFRDIQEHIRRVYRRNGFEEVNTPVFMKKELWQTSGHMDMFAENMF 78

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               + N    +  P        +F+  + S+R+LP   ++  L  R+E      G +R+
Sbjct: 79  FGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFGLVHRNESSGSLNGCLRA 138

Query: 153 REFLMKDAYSF 163
           R+F   DA+ F
Sbjct: 139 RQFTQDDAHVF 149


>gi|228900981|ref|ZP_04065194.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228858679|gb|EEN03126.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 640

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|67475342|ref|XP_653365.1| threonyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56470308|gb|EAL47979.1| threonyl-tRNA synthetase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 676

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 10  ILQENPRDAEIAS---HKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L+E  + AE A    H+L+ R       H  S G   WLP G +  + +  ++R E   
Sbjct: 266 LLKEYIKRAEEADKRDHRLIGRQQDLFFFHVLSPGSCFWLPHGTRIYNKLVELMRSEYRV 325

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +  + LW  SG +  Y  +M    +   +     P +      +F S  +
Sbjct: 326 LGYQEVITPNIFLSTLWETSGHWQHYKDDMFSF-ECEKQTFALKPMNCPGHCVMFASKKR 384

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP  + +  +  R+EL     G+ R R F+  D++ F
Sbjct: 385 SYRELPLRYAEFGVLHRNELTGALHGLTRVRRFVQDDSHIF 425


>gi|303257521|ref|ZP_07343533.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000214|ref|ZP_08323898.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859491|gb|EFL82570.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329572380|gb|EGG54033.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 641

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 163/428 (38%), Gaps = 60/428 (14%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G+I  H++G   W          V   +R         E+  P L    LW +SG +  Y
Sbjct: 261 GLIFWHARGWALW--------QQVEQYMRRVYQDNDYQEVKAPQLLDRSLWEKSGHWSKY 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M      N +     P +      IF S ++SYR+LP  + +     R+E      G
Sbjct: 313 KENMFTTESEN-RYYALKPMNCPGHIQIFNSAVRSYRDLPIRYGEFGACHRNEPSGSLHG 371

Query: 149 VMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IG 203
           +MR R F   D + F    +      +Y K+     +++   G   I  +  + P   IG
Sbjct: 372 LMRVRGFTQDDGHIFCTEDQILSECTAYTKLV---QKVYADYGFTDISYKIATRPEKRIG 428

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            D +       D  E      K  MD  + +    +D       I+    A Y    + H
Sbjct: 429 DDATW------DKAE------KALMD-ALDASGIKYD-------ILPGEGAFYGPKIEYH 468

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF-KGADGKDHYVQMGSYGIG 320
              L DSL        RG + G I      + +P  + A +   ++G+   V +    +G
Sbjct: 469 ---LRDSL-------GRGWQCGTI---QVDFQMPARLGAEYVTESNGRATPVMLHRAIVG 515

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++   + G+   W   +AP ++++ NI   DQ   D  +++ + L K G    
Sbjct: 516 SLERFIGMLLEHYAGQLPPW---LAPVQVAVANI-TDDQA--DYAKEVVSMLKKAGLRAE 569

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D    +I  +     L   P  ++VG+K  ++ KV ++ R       MS+E+ I     
Sbjct: 570 ADLRNGKITYKIRELSLQKLPYILVVGAKEKAEGKVAVRVRGGKDLGAMSVEDFIKLVQE 629

Query: 441 RFSNNRPV 448
             +  R V
Sbjct: 630 DVATRRNV 637


>gi|291486342|dbj|BAI87417.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 638

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP GQ   + +    RE Q   G  E+  P + +  LW +SG +D Y 
Sbjct: 257 MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGYNEVRTPFMMNQRLWEQSGHWDHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++ +  ++ +D      P +      IF++ + SYR+LP    +     R E      G+
Sbjct: 316 RDNMYFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYRDLPIRMAEFGQVHRHEYSGALNGM 375

Query: 150 MRSREFLMKDAYSF 163
           +R R F   DA+ F
Sbjct: 376 LRVRTFCQDDAHIF 389


>gi|58582810|ref|YP_201826.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427404|gb|AAW76441.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 671

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 293 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 352

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 353 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 411

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 412 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 470

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 471 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 507

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 508 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 560

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        DA  K    L+  G  V  D   E+
Sbjct: 561 ILIEHHAGA---FPSWLAPVQVVVANITDAQADYVDAVRKT---LANQGFRVSADLRNEK 614

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 615 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 648


>gi|23016433|ref|ZP_00056189.1| COG0441: Threonyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 621

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIHQHSKGIYS--WLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + HQ  +   S  W   G      V + +R     
Sbjct: 216 YLHMLEE----AEKRDHRRLGREMELFHQQEEAAGSVFWHKKGWTLYRAVESYMRRRLEA 271

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P L    LW  SG  D + + M  +  ++++ +   P +      IFR  IK
Sbjct: 272 NDYQEVKTPQLVDFSLWEASGHADKFSESMFTIRTQDERHLAVKPMNCPCHVQIFRQGIK 331

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP    +     R E      G+MR R F   DA+ F
Sbjct: 332 SYRDLPLRMAEFGSCHRYEPSGALHGIMRVRAFTQDDAHIF 372


>gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166223347|sp|A4G619|SYT_HERAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|133738909|emb|CAL61956.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Herminiimonas arsenicoxydans]
          Length = 635

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 9/161 (5%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  + + G+  W P G      V   +R     
Sbjct: 231 YLTMLEE----AEKRDHRKLGRALDLFHFQEEAPGLIFWHPKGWTVWQQVEQYMRRVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +++Y + M      N ++    P +      IF S ++
Sbjct: 287 NGYQEVKAPQILDRSLWEKSGHWENYKENMFTTESEN-RSYALKPMNCPGHVQIFASDLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP  + +     R+E      G+MR R F   D + F
Sbjct: 346 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF 386


>gi|209695239|ref|YP_002263168.1| threonyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|208009191|emb|CAQ79445.1| threonyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 642

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 150/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   +RE+       E+  P +    LW  SG +D Y +
Sbjct: 256 MQQEAPGMVFWHHNGWTIFRELEVFVREKLTEYDYQEVKGPLMMERVLWERSGHWDKYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGACHRNEPSGALHGIM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +      + + + Y   +   G ++I ++  + P   +G D  
Sbjct: 375 RVRGFTQDDAHIFCTEAQVQDEVKSCIEMVY-DTYTTFGFENIVVKLSTRPEQRVGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E         +   + S N  ++       I E   A Y    +     L
Sbjct: 432 ----EMWDKAEAD-------LQLALESMNIAYE-------IQEGEGAFYGPKIEF---TL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++ I        D  ++I  +L K G  V  D  
Sbjct: 521 FIGILIEDYAG---FFPTWLAPEQAIVMGITDKQA---DYVQEIAKKLQKNGFRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 575 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 611


>gi|207109933|ref|ZP_03244095.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 132

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 36/52 (69%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+++A++E+
Sbjct: 78  KSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSAILET 129


>gi|109947952|ref|YP_665180.1| threonyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|123362536|sp|Q17VZ5|SYT_HELAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109715173|emb|CAK00181.1| thrS [Helicobacter acinonychis str. Sheeba]
          Length = 612

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|325919878|ref|ZP_08181868.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
 gi|325549662|gb|EGD20526.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
          Length = 634

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/394 (19%), Positives = 142/394 (36%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D++
Sbjct: 375 RVRGFTQDDGHVFCLESQ-IEAEVTAFHQQALAVYTAFGFDDIEIKIALRPEKRLGDDVT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDEHSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        D  + +   L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVANIT---DAQADYVDSVRKTLANQGFRVNADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 611


>gi|188577599|ref|YP_001914528.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522051|gb|ACD59996.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 649

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 271 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 330

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 331 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 389

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 390 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 448

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 449 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 485

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 486 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 538

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        DA  K    L+  G  V  D   E+
Sbjct: 539 ILIEHHAGA---FPSWLAPVQVVVANITDAQADYVDAVRKT---LANQGFRVSADLRNEK 592

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 593 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 626


>gi|317010401|gb|ADU84148.1| threonyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|261837575|gb|ACX97341.1| threonyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|149185120|ref|ZP_01863437.1| threonyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831231|gb|EDL49665.1| threonyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 671

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 163/439 (37%), Gaps = 81/439 (18%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G +    + A +R + +  G  E+  P L     W  SG +  Y +
Sbjct: 265 LQEEAHGSVFWHPNGYRIWRELEAYMRRKMDGAGYREIKTPQLMDVRQWTASGHWGKYAE 324

Query: 92  EML-------------------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            M                    ++AD  D  M   P +      +F+  I SYR+LP   
Sbjct: 325 NMFAVPDIVPDVDDSGAASAHPKVADDAD-WMAIKPMNCPAHVLVFKQGITSYRDLPIRL 383

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R+E      G+MR R+F   DA+ F               V  +R F +L   
Sbjct: 384 GEMGCCHRNEPHGALHGLMRVRQFTQDDAHIF---------CSESQVVEEVRAFCKL--- 431

Query: 192 SIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIV 249
                AES  +  D    F I LA   E ++              + D+D     L   V
Sbjct: 432 -----AES--VYKDFGFTFAIKLALRPEKRL------------GSDADWDKAEQELRDAV 472

Query: 250 EQWTAPYAATSDVHNEKL-FDSLPENKRVSARGIE------VGHIFYFGT---KYSLP-- 297
           E+        + + NE+  ++ LP      A  +E      +G  +  GT      LP  
Sbjct: 473 EE--------AGMMNEEFGWEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQGDRVLPER 524

Query: 298 MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A++ G DG+ H   M    I G+      ++   + G+  +W   +AP +  +  I +
Sbjct: 525 LDASYVGEDGEKHRPVMLHRAIFGSYERFIGILIEHYAGRMPVW---LAPTQAVVATIVS 581

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  ++  A+L   G  V  D   E+I  +         P  ++VG++   +  V
Sbjct: 582 D---ADDYAKEAVAKLEAAGIRVASDLRNEKINYKVREHSHAKVPHLLVVGNREAEEGTV 638

Query: 417 EIKHRLTGIREDMSLEEVI 435
            ++      ++ M LEE I
Sbjct: 639 AVRTLGQQHQKVMPLEEAI 657


>gi|322383766|ref|ZP_08057517.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151978|gb|EFX44921.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 649

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/397 (18%), Positives = 155/397 (39%), Gaps = 47/397 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      +   I + + + G   +  P L + DL+  SG ++ Y ++M   
Sbjct: 263 QGLPLWLPNGATIRRTLERYIVDLEEKLGYQHVYTPVLANVDLYKTSGHWEHYREDMFPP 322

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P +      ++++ + SYR+LP    ++    R E+     G+ R R  
Sbjct: 323 MQLDNEELVLRPMNCPHHMMVYKNELHSYRDLPIRIAELGTMHRYEMSGALTGLHRVRAM 382

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K  + ++     +++   G+     R         LS+      D
Sbjct: 383 TLNDAHIF-CRPDQIKEEFARVITLIRQVYADFGITDYRFR---------LSYR-----D 427

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY---AATSDVHNEKL----F 268
             +T  +   D M + +            L  +VE+   PY      +  +  KL     
Sbjct: 428 PQDTDKYFPNDEM-WEMSQR--------MLKEVVEELRLPYYEAEGEAAFYGPKLDVQIK 478

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
            +L + + +S   ++    F    ++ L     + G DG+ H   +   GI   M  + A
Sbjct: 479 TALKKEETLSTAQLD----FLLPERFEL----EYVGEDGQKHRPVVIHRGIVSTMERMTA 530

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +  +  G    W   + P +  ++ + +      D  +++  RL + G  V  D   E+
Sbjct: 531 FLLENFAGALPTW---LCPVQAKILPVSS---AFNDYAKEMEDRLKQAGIRVAADLRNEK 584

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G +   + L   P  ++VG          ++ R  G
Sbjct: 585 LGYKIRESQLEKVPFMLVVGENEKQSGSFSVRRRGEG 621


>gi|42526600|ref|NP_971698.1| threonyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|73919840|sp|Q73NR2|SYT_TREDE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41816793|gb|AAS11579.1| threonyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 585

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 10/190 (5%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ +   +    I + + G   W P G      +   +R+  
Sbjct: 172 KEYLAMLEE----AEKRDHRRIGKAMNLFHIDEENPGQIFWHPKGWTLYLTIQNYVRKRI 227

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW  SG +  Y KE + + +   +     P +     +IF+  
Sbjct: 228 KEDGYLEVHTPFVMPRSLWERSGHWAKY-KENMFITESEKRLFALKPMNCPGHVEIFKQG 286

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSY++LP    +     R+E      G+MR R F+  DA+ F  T E      +K    
Sbjct: 287 IKSYKDLPLRLAEFGSCTRNEPSGSLHGIMRIRGFVQDDAHIF-CTEEQISSEVSKFCAL 345

Query: 181 YLRIFHRLGL 190
             R++   G 
Sbjct: 346 LKRMYADFGF 355


>gi|321313312|ref|YP_004205599.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320019586|gb|ADV94572.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 638

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP GQ   + +    RE Q   G  E+  P + +  LW +SG +D Y 
Sbjct: 257 MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGYDEVRTPFMMNQRLWEQSGHWDHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++ +  ++ +D      P +      IF++ + SYR+LP    +     R E      G+
Sbjct: 316 RDNMYFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYRDLPIRMAEFGQVHRHEYSGALNGM 375

Query: 150 MRSREFLMKDAYSF 163
           +R R F   DA+ F
Sbjct: 376 LRVRTFCQDDAHIF 389


>gi|257459979|ref|ZP_05625083.1| threonyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257442420|gb|EEV17559.1| threonyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 607

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/417 (19%), Positives = 159/417 (38%), Gaps = 47/417 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            Q   G+  WLP G +    +   +  +  + G   +  P +  +D W  SG Y +Y KE
Sbjct: 228 EQIGAGLPIWLPAGTRMRIKLEGRLYRQLRKRGYEPVRGPEILKSDAWKISGHYSNY-KE 286

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +      ++     P +      +++S I+SYR+LP  F +  +  R E      G+ R
Sbjct: 287 NMYFTTIEEQEYGIKPMNCVGHIKVYQSEIRSYRDLPLKFCEYGVVHRHEKSGVLHGLFR 346

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKM-FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            REF   DA+ F +  +  ++ Y  + FV  L            M+A           E+
Sbjct: 347 VREFTQDDAHLFVMPSQIKENVYEILDFVELL------------MKA--------FGFEY 386

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            +   T   +     +  D    +     D+      + E   A Y    D+   K+ D+
Sbjct: 387 ELEISTKPQKAVGDDEVWDIATKALKDALDEKGLKYGLDEGGGAFYGPKIDI---KITDA 443

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRVVAA 327
           L        R  + G +      ++LP        D    K   V +    +G+      
Sbjct: 444 L-------GRKWQCGTV---QVDFNLPARFELGYIDENNEKKQPVMLHRAILGSFERFVG 493

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           ++     G+   W   + P ++S++ I +AH    ++    +  R + +  ++   D  E
Sbjct: 494 ILLEHTAGELPFW---ICPTQVSIVPIGEAHASYAKEILNLL--RAADIDGEIL--DRNE 546

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +  +   A+    PL +++G   VS   V ++ R    + ++ L+E +N+   + +
Sbjct: 547 TLNKRIRTAEKQKVPLIIVLGDNEVSARSVALRDRRAREQRNLGLDEFLNFVKAKLN 603


>gi|313673284|ref|YP_004051395.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940040|gb|ADR19232.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 640

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 1/133 (0%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G   +   G+  W+P G K    +    R E  + G   +  P +  ++LW  SG  D Y
Sbjct: 252 GTFDEIGSGLICWMPKGAKVRATIEEFWRREHFKNGYDLLYTPHIGKSNLWQTSGHLDFY 311

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M    D   +     P +      I++S  +SYR+LP  + ++   +R E      G
Sbjct: 312 SENMYSPMDIEGQNYYIKPMNCPFHIMIYKSKNRSYRDLPLRWAELGTVYRYERSGVLHG 371

Query: 149 VMRSREFLMKDAY 161
           ++R R F   DA+
Sbjct: 372 LLRVRGFTQDDAH 384



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G++     V+   + G    W   +AP +I ++NI        D CE++Y RL   G  
Sbjct: 514 LGSLERFFGVLIEHYAGAFPFW---LAPVQIKIMNISDEQA---DYCEQLYRRLKAEGFR 567

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           V  D   E+IG +   A L   P  +++G++    + V ++ R    + ++   E
Sbjct: 568 VEMDLRNEKIGYKIREAQLFKVPHMIVIGNQEKEKNHVSVRLRNGETKNNLDFSE 622


>gi|237745470|ref|ZP_04575950.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229376821|gb|EEO26912.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 650

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R+  + H    + G+  W P G      V   +R+    
Sbjct: 246 YLHMLEE----AEKRDHRRLGRSLDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRKVYRD 301

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +D+Y + M      N +     P +      I+RS++ 
Sbjct: 302 NGYQEVKGPQILDRSLWEKSGHWDNYKENMFTTESEN-RVYAIKPMNCPGHVQIYRSNLH 360

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP  + +     R+E      G+MR R F   D + F
Sbjct: 361 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF 401


>gi|221311719|ref|ZP_03593566.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316045|ref|ZP_03597850.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320956|ref|ZP_03602250.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325241|ref|ZP_03606535.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767793|ref|NP_391636.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763338|sp|P18256|SYT2_BACSU RecName: Full=Threonyl-tRNA synthetase 2; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225185421|emb|CAB15783.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 638

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP GQ   + +    RE Q   G  E+  P + +  LW +SG +D Y 
Sbjct: 257 MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGYDEVRTPFMMNQRLWEQSGHWDHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++ +  ++ +D      P +      IF++ + SYR+LP    +     R E      G+
Sbjct: 316 RDNMYFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYRDLPIRMAEFGQVHRHEYSGALNGM 375

Query: 150 MRSREFLMKDAYSF 163
           +R R F   DA+ F
Sbjct: 376 LRVRTFCQDDAHIF 389


>gi|91226476|ref|ZP_01261225.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91189108|gb|EAS75389.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 410

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + +  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 376 RVRGFTQDDAHIF 388


>gi|320093816|ref|ZP_08025661.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979249|gb|EFW10747.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 669

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 150/395 (37%), Gaps = 31/395 (7%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           +RE     G   +  P +  A+L+  SG    Y   M    D   +A      +  +   
Sbjct: 292 VREAHIANGFQYVGTPHISKAELFHTSGHLPYYADGMFPPMDDEGQAYYLKAMNCPMHNL 351

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  F++    +R+E      G+ R R     D++S+  TPE +     
Sbjct: 352 IFRSRGRSYRELPLRFFEFGTVYRNEKSGVLQGLTRVRSITQDDSHSY-CTPEQAPGEVR 410

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L +    G++   +   +    G    +FI     G  + +     +   I +E
Sbjct: 411 HLLTFVLTLLKDFGMEDFYLEVSTRDEDGAKKDKFI-----GSDEQWADATRILADIAAE 465

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               + +  ++       A Y     V  +   D++    ++S    +      FG +Y+
Sbjct: 466 CAQENGLRVVDD--PGGAAFYGPKISVQAK---DAIRRTWQMSTIQYDFNQPHRFGLEYT 520

Query: 296 LPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                    ADG  H  V + S   GA+     V+   + G    W   +AP ++ L+ +
Sbjct: 521 --------AADGARHEPVMIHSAKFGAIERFIGVLTEHYAGAFPAW---LAPVQVRLVPV 569

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D  E++ A+L + G  V  D   ++ G +   A     P  +I G +     
Sbjct: 570 AS---AFDDYVEEVAAKLRERGIRVETDLSDDRFGKKIRNAAKEKVPFTLIAGGEDAEAG 626

Query: 415 KVEIKHR----LTGIREDMSLEEVINYASHRFSNN 445
            V  + R      GI  D ++E +  + + R +++
Sbjct: 627 AVSFRLRDGSQHNGIPVDRAVELIARHVASRANHD 661


>gi|206900126|ref|YP_002250745.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206739229|gb|ACI18287.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 638

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G      +    R+E  + G + +  P L  A+LW  SG +D+Y + M  L 
Sbjct: 258 GLIFYPPKGAMLRLIIEEFERKEHLKRGYLPVITPHLMQAELWKRSGHWDNYRENMFFL- 316

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFL 156
              DK     P +      I+ S ++SYR+LP  F+++   +R E     +G+ R+R F 
Sbjct: 317 QVEDKDYAVKPMNCPGHILIYNSKVRSYRDLPLRFFEMGTVYRYERSGVLYGLERARGFT 376

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 377 QDDAHIF 383


>gi|46200191|ref|YP_005858.1| prolyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|81830546|sp|Q72GF9|SYP_THET2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46197819|gb|AAS82231.1| prolyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 477

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D +G+
Sbjct: 221 GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDDRGL 279

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVA 395
           + P  +AP ++ ++ I   +   R  +A + +   L   G  V  DD  +   G +F   
Sbjct: 280 VLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALQAKGLRVHLDDRDQHTPGYKFHEW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +L G P +V +G K +   +  +  RL G +E + L
Sbjct: 340 ELKGVPFRVELGPKDLEQGQAVLASRLGG-KETLPL 374


>gi|143764|gb|AAA22863.1| threonyl-tRNA synthetase (thrS2) (EC 6.1.1.3) [Bacillus subtilis]
          Length = 638

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP GQ   + +    RE Q   G  E+  P + +  LW +SG +D Y 
Sbjct: 257 MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGYDEVRTPFMMNQRLWEQSGHWDHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++ +  ++ +D      P +      IF++ + SYR+LP    +     R E      G+
Sbjct: 316 RDNMYFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYRDLPIRMAEFGQVHRHEYSGALNGM 375

Query: 150 MRSREFLMKDAYSF 163
           +R R F   DA+ F
Sbjct: 376 LRVRTFCQDDAHIF 389


>gi|307636813|gb|ADN79263.1| threonyl tRNA sythetase [Helicobacter pylori 908]
 gi|325995402|gb|ADZ50807.1| Threonyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|297379344|gb|ADI34231.1| threonyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|315586098|gb|ADU40479.1| threonine--tRNA ligase [Helicobacter pylori 35A]
 gi|317179509|dbj|BAJ57297.1| threonyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|217034632|ref|ZP_03440039.1| hypothetical protein HP9810_881g25 [Helicobacter pylori 98-10]
 gi|216942927|gb|EEC22414.1| hypothetical protein HP9810_881g25 [Helicobacter pylori 98-10]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|294655282|ref|XP_002770111.1| DEHA2B10252p [Debaryomyces hansenii CBS767]
 gi|199429831|emb|CAR65481.1| DEHA2B10252p [Debaryomyces hansenii]
          Length = 733

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            ++ S G   WLP G +  + +  ++R+E  + G  E+  P + ++ LW  SG + +Y +
Sbjct: 337 FNEMSPGSAFWLPHGTRIYNTLTDLMRKEYRQRGYDEVITPNMYNSKLWETSGHWGNYKE 396

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F+S  +SYR LP+      +  R+EL     G+ 
Sbjct: 397 NMFSF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNELSGALSGLT 455

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 456 RVRRFQQDDAHIF 468


>gi|146304348|ref|YP_001191664.1| threonyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|172046910|sp|A4YH38|SYT_METS5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145702598|gb|ABP95740.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Metallosphaera
           sedula DSM 5348]
          Length = 541

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 154/405 (38%), Gaps = 63/405 (15%)

Query: 33  HQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           H+ S  G+  + P GQ   + +   +RE     G  E+    +    LW  SG YD+Y  
Sbjct: 149 HEESGPGLVLFHPKGQLIRNEMINYMREINASMGYQEVYTSHVFRTVLWKISGHYDTYRD 208

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
           +ML +  ++D  +   P +      I++S ++SYR+LP  F +    +R E +   +G++
Sbjct: 209 KML-IFQKDDDELGIKPMNCPAHILIYKSRVRSYRDLPIRFSEFGNVYRWEKKGELYGLL 267

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+R F   D + F L  +  K     +    L +  + G K   +R        +LS   
Sbjct: 268 RTRGFTQDDGHIF-LREDQLKDEVKNLVRKTLDVLGKFGFKGEDVRI-------NLSTR- 318

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                                 P E+   D         EQW     A  DV  E     
Sbjct: 319 ----------------------PDESIGSD---------EQWEKATKALLDVLKELNVPY 347

Query: 271 LPENKRVSARGIEVG-----------HIFYFGTKYSLP--MSATFKGADGKDHYVQMGSY 317
           + + K  +  G ++             +      ++LP      +   DG      M   
Sbjct: 348 VVKEKEGAFYGPKIDFDIRDSLNRWWQLSTIQVDFNLPERFKLEYVDEDGSKKRPVMVHR 407

Query: 318 GI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            I G++  + A++     GK   W   ++P ++ ++ I + D +  D  +++   L + G
Sbjct: 408 AIYGSLDRMIAILLEHFRGKLPTW---LSPVQVRVLPI-SEDNL--DYAKRVMDVLVQRG 461

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                D  GE +  +       G P  VIVG K  S+ KV I+ R
Sbjct: 462 IRTEIDPSGETLSKRIKRGYDDGVPYLVIVGRKEASEEKVTIRAR 506


>gi|317176942|dbj|BAJ54731.1| threonyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|295101322|emb|CBK98867.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Faecalibacterium
           prausnitzii L2-6]
          Length = 594

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I+E++   G + +  P + + +L+  SG +D Y + M   
Sbjct: 213 RGLPMFLPAGYTVWQELENYIKEKERARGYLHVMTPCIGTVNLYKTSGHWDHYRENMFPA 272

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ +   SYR+LP    +I   FR E      G+ R R F
Sbjct: 273 MEMEGESYVLRPMNCPHHMMIYANRPHSYRDLPMRIGEIAHDFRYESSGTLKGIERGRHF 332

Query: 156 LMKDAYSFDLTPEGSK 171
              DA+ F  TPE  K
Sbjct: 333 CQNDAHLF-CTPEQIK 347


>gi|313124186|ref|YP_004034445.1| threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280749|gb|ADQ61468.1| Threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 643

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 161/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  +  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + +     + ++H   +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQVQEEFARTLQIIMDVYHDFDINDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ GADG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFEL----SYIGADGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N+ AH     D  +K+   L   G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNLDAH----SDYAKKVRDELVAKGFRAEIDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +     P  +++G   ++   V ++   T  +   SL E ++  S
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLAEFMDKLS 633


>gi|217967219|ref|YP_002352725.1| prolyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336318|gb|ACK42111.1| prolyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 480

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 14/177 (7%)

Query: 255 PYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           P  A     NEK   +L     E      R ++ G     G  ++      F+  DG+  
Sbjct: 195 PVIAGKKTENEKFAGALHTYSIEVLLADGRALQAGTSHNLGQHFAKAFDIMFQDVDGERK 254

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--DQV-CRDACEK 367
           YV   S+G+ + R++ A+I +  D  G++ P  VAP++I +I I  +  D+V   +  ++
Sbjct: 255 YVWQTSWGV-STRLIGALIMTHGDDYGLVLPPRVAPYQIVIIPIWKNETDKVKVYNYIDE 313

Query: 368 IYARLSK---VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IY  L K   V  D    D     G +F   +L G P+++ +G K V   ++ +  R
Sbjct: 314 IYEVLKKYFRVKVD---RDEEHTPGWKFNEWELKGVPVRLEIGPKEVEKQEIYVARR 367



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            K F+  L     D      +++L+  ++ +   KG     P G    +N+  I+ E+  
Sbjct: 2   EKKFVEELTSQKEDFSKWYTEVVLKADLVDYSPVKGCMVIKPYGYAIWENMQRILDEKIK 61

Query: 63  RTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDI 117
            TG +    P  +  + L  E+   + +  ++  +    D+     +   PT E ++  +
Sbjct: 62  ETGHVNAYFPLFIPKSFLEKEAEHVEGFSPQVAWVTKGGDEDLFEPLAVRPTSEAIICSM 121

Query: 118 FRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +   I+S+R+LP    Q    +++  E RP    +R+ EFL ++ ++   T E ++    
Sbjct: 122 YSKWIQSWRDLPILINQWANVVRWEKETRP---FLRTTEFLWQEGHTAHRTFEEAEEEAL 178

Query: 176 KMFVSY 181
           +M   Y
Sbjct: 179 RMLNVY 184


>gi|308062983|gb|ADO04870.1| threonyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|308061413|gb|ADO03301.1| threonyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|188526926|ref|YP_001909613.1| threonyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|238691884|sp|B2URV1|SYT_HELPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188143166|gb|ACD47583.1| threonyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|84624684|ref|YP_452056.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|73919845|sp|Q5GXY0|SYT_XANOR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123725509|sp|Q2P0Z5|SYT_XANOM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84368624|dbj|BAE69782.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        DA  K    L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVANITDAQADYVDAVRKT---LANQGFRVSADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 611


>gi|13358015|ref|NP_078289.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762025|ref|YP_001752537.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920192|ref|ZP_02931576.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508558|ref|ZP_02958076.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701893|ref|ZP_02971547.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|81858603|sp|Q9PQ38|SYP_UREPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511629|sp|B1AJ93|SYP_UREP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|11279770|pir||B82890 prolyl aminoacyl-tRNA synthetase UU452 [imported] - Ureaplasma
           urealyticum
 gi|6899444|gb|AAF30864.1|AE002141_10 prolyl aminoacyl-tRNA synthetase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827602|gb|ACA32864.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902571|gb|EDT48860.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182676000|gb|EDT87905.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701201|gb|EDU19483.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 472

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 12/151 (7%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y G  ++      F+G D + HYV   S G+ + R++ A+I    D +G+I P  +A  +
Sbjct: 232 YLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMVHADDQGLILPPDIAFNQ 290

Query: 349 ISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           I+++ I ++      ++ +  CE++          +F D   + IG + A  ++ G P+ 
Sbjct: 291 IAILTIFSNKNPQLLKISQQICEQLN------NYRLFEDHSDKGIGYKLAQQEIEGTPIC 344

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++VG+K + + +V I  R T  + ++ L ++
Sbjct: 345 ILVGAKELVNQQVVIVRRDTHEKINVDLTDL 375


>gi|317181405|dbj|BAJ59189.1| threonyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|315639668|ref|ZP_07894808.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315484629|gb|EFU75085.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 478

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++     T+   + K       S+G+ + R++ ++I +  D  G+
Sbjct: 215 GKAVQAGTSHYMGTKFAEAFDITYLTKENKHVAAHTTSWGV-STRLLGSLIMTHGDENGL 273

Query: 339 IWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           ++P +VAP ++ L+ +     +    +  +KI+  L   G  V  DD     G +F   +
Sbjct: 274 VFPPTVAPTQVVLLPVGPWKKNPAILEKLDKIFQELKAKGIRVRLDDSENSPGYKFHEWE 333

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           L G  +++  G + + +  V  K R    +  ++ +E++ Y   + +
Sbjct: 334 LKGACIRIECGPRDLENGHVMAKVRDVDGKVTVAFDELLAYIDEQLA 380


>gi|78776267|ref|YP_392582.1| threonyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|78496807|gb|ABB43347.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 602

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WLP G +    + +++ +   + G   +  P +  +DLW  SG Y +YG+ M    
Sbjct: 228 GFPIWLPAGGRLRARLESLLFKAHRKRGYEPVRGPEMLRSDLWKTSGHYQNYGENMY-FT 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++      P +      I+   + SYR+LP  +++  +  R E+     G+ R REF 
Sbjct: 287 NIDEIEFGVKPMNCVGHIKIYEEDLHSYRDLPLKYFEYGVVHRHEMTGALHGLFRVREFT 346

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 347 QDDAHIF 353


>gi|260777881|ref|ZP_05886774.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605894|gb|EEX32179.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 642

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + +  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 376 RVRGFTQDDAHIF 388


>gi|239814876|ref|YP_002943786.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|259516786|sp|C5CUU2|SYT_VARPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239801453|gb|ACS18520.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 635

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 146/422 (34%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W P G      V   +R     TG  E+  P +    LW ++G + +Y  
Sbjct: 255 IDEVAPGVVFWHPKGWALWQAVEQYMRGIYRDTGYWEVKGPQILDKSLWEKTGHWQNYRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      IF+S ++SYR+LP  + +     R+E      G+M
Sbjct: 315 NMF-TTESEKREYALKPMNCPGHVLIFKSDLRSYRDLPLRYGEFGQCHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F  T +              +++   G   I  +  + P   +G D  
Sbjct: 374 RVRGFTQDDGHIF-CTEDQILEECVAYTAQLQKVYADFGFTEILYKVATRPDNRVGSD-- 430

Query: 208 HEFIVLADTGETQVF--CSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                L D  E  V     +  +DF I P +   +   I                     
Sbjct: 431 ----ELWDKAEHAVMEALRRSGVDFIISPGDGAFYGPKIEYT------------------ 468

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             L D+L    +     ++       G +Y    S       G+ H V +    +G++  
Sbjct: 469 --LKDALGRQWQCGTMQVDFNTAERLGGEYVTETS-------GRAHPVMLHRAIVGSLER 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   H G    W   +AP +++++NI        D    +   L   G  V  D  
Sbjct: 520 FIGMLIEHHAGALPAW---LAPVQVAVLNISEGQA---DYAASVAKTLQNQGLRVQLDLH 573

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+I  +     L   P  ++VG K      V ++ R       MSLE  +       ++
Sbjct: 574 NEKITYKIRKHSLQKLPYILVVGDKEREAGAVAVRARGNQDLGAMSLESFVQRLVQDVAD 633

Query: 445 NR 446
            R
Sbjct: 634 KR 635


>gi|158336193|ref|YP_001517367.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158306434|gb|ABW28051.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 616

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/420 (20%), Positives = 154/420 (36%), Gaps = 79/420 (18%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+   + G   +  P + + DLW  SG +D Y   M    
Sbjct: 239 GLVFWHPRGARIRQVIETYWRQAHTQGGYELLYTPHMANLDLWKTSGHFDFYRDSMFDQM 298

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +A    P +       ++  + SYR  P  + ++   +R E      G+MR R F 
Sbjct: 299 EVETQAYQIKPMNCPFHVLTYQHDLHSYREFPLRWAELGTVYRYERSGTLHGLMRVRGFT 358

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L  +                                     ++ E + + D 
Sbjct: 359 QDDAHIFCLPDQ-------------------------------------VADEILAVLDL 381

Query: 217 GETQVFCSKDFMDFPI-----PSENTDFDDIISLNSIVEQWTAPYAATSDVH---NEKLF 268
            ET V     F D+ +     P ++   D+I  L            AT D+    + K +
Sbjct: 382 TET-VLSDFGFRDYEVNLSTRPDKSVGSDEIWDL------------ATQDLRTALDRKGW 428

Query: 269 DSLPENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMG 315
           + L +    +  G +        +G ++   T    ++LP      +  ADG      M 
Sbjct: 429 EYLTDEGGGAFYGPKIDLKIRDAIGRLWQCSTIQVDFNLPERFKMEYVAADGTRQRPIMI 488

Query: 316 SYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              I G++     ++  ++ G   +W   +AP +I L+ +       R    ++  +L +
Sbjct: 489 HRAIFGSLERFFGILIENYAGDFPLW---LAPVQIRLLVVS---DAQRPYALEVLEQLQQ 542

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G     D  GE++G Q   + L   P+  +VG K V    + I+ R +  +E + L E+
Sbjct: 543 KGFRAEIDQTGERLGKQIRQSALEKIPVVAVVGQKEVEAQTLNIRTRHSEEQELLKLPEL 602


>gi|229079560|ref|ZP_04212097.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228703729|gb|EEL56178.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
          Length = 640

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYKYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|146304669|ref|YP_001191985.1| prolyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|172046942|sp|A4YI09|SYP_METS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145702919|gb|ABP96061.1| prolyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 480

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG   W+P G K   NV  +IR+  + TG  E+  P L    L  +   +   + KE+  
Sbjct: 34  KGSGVWMPYGFKIRQNVTTLIRKLLDETGHEEVLFPLLIPETLLKKEAEHIKGFEKEVFW 93

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  ++     PT E  +T +    IK Y  LP  FYQI   FR E +    ++R
Sbjct: 94  VTHGGEDELEERFALRPTSEVAITLMESLWIKGYSQLPRKFYQIVSVFRYETKATRPMIR 153

Query: 152 SREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            RE    K+A++   T E +    ++    Y + F  LG+
Sbjct: 154 VRELSTFKEAHTVHETFEDAARQVDEAVEIYSKFFDILGI 193



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G   + G  ++  M    + ADG   +    SYGI   RV+A VI  + D  G 
Sbjct: 222 GRALQIGTAHHLGQHFTKAMDYKVQRADGSHVHPHQTSYGISD-RVIATVISINGDDHGP 280

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVGCDVFWDDMGEQI-GSQFA 393
           I P  VAP +  +I I    +   +   K    + + L   G  V  D   ++  G ++ 
Sbjct: 281 ILPPVVAPIEGVIIPIPGKSEEDTEKINKYAMEVESVLKNSGIRVALDASEDKTPGEKYY 340

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + +L G P+++ +G + ++     +K R T   + +  EE++ 
Sbjct: 341 IWELKGVPIRIEIGPRELNSGTAFLKRRDTLEGKSVKREELVK 383


>gi|88809590|ref|ZP_01125097.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786340|gb|EAR17500.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 611

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 150/393 (38%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEDFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYAESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 QVDEREYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       K+     RI       +  +   + P   IG D   +   
Sbjct: 348 TQDDAHVFCL-PEQISDEILKILDLTERILSTFDFNTYEINLSTRPEKSIGDDAVWD--- 403

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +    K +                    I E   A Y    D+   K+ D++ 
Sbjct: 404 LATKGLIEALERKGWA-----------------YKIDEGGGAFYGPKIDL---KIEDAIG 443

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++    F    ++ L     +  ADG      M    I G++     ++  
Sbjct: 444 RMWQCSTIQLD----FNLPERFKL----DYIAADGSKQRPIMIHRAIFGSLERFFGIMTE 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP ++ L+ +   D+V +   E++  +L++VG     D  G+++G  
Sbjct: 496 NYAGDYPFW---LAPEQVRLLPVT--DEV-QPYAERLLDQLTQVGVRATIDRSGDRLGKL 549

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               + +  P+  ++G+K    + V ++ R  G
Sbjct: 550 IRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDG 582


>gi|308183917|ref|YP_003928050.1| threonyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308059837|gb|ADO01733.1| threonyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|325473136|gb|EGC76332.1| threonyl-tRNA synthetase [Treponema denticola F0402]
          Length = 585

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 10/190 (5%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ +   +    I + + G   W P G      +   +R+  
Sbjct: 172 KEYLAMLEE----AEKRDHRKVGKAMNLFHIDEENPGQVFWHPKGWTLYLTIQNYVRKRI 227

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW  SG +  Y KE + + +   +     P +     +IF+  
Sbjct: 228 KEDGYLEVHTPFVMPRSLWERSGHWAKY-KENMFITESEKRLFALKPMNCPGHVEIFKQG 286

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSY++LP    +     R+E      G+MR R F+  DA+ F  T E      +K    
Sbjct: 287 IKSYKDLPLRLAEFGSCTRNEPSGSLHGIMRIRGFVQDDAHIF-CTEEQISSEVSKFCAL 345

Query: 181 YLRIFHRLGL 190
             R++   G 
Sbjct: 346 LKRMYADFGF 355


>gi|228921082|ref|ZP_04084417.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838628|gb|EEM83934.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 640

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYKYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|323499329|ref|ZP_08104306.1| threonyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323315717|gb|EGA68751.1| threonyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 642

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR + +  G  E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 376 RVRGFTQDDAHIF 388


>gi|229190445|ref|ZP_04317445.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228593058|gb|EEK50877.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
          Length = 640

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYKYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|218231087|ref|YP_002367070.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|218159044|gb|ACK59036.1| threonine--tRNA ligase [Bacillus cereus B4264]
          Length = 640

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYKYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|317179928|dbj|BAJ57714.1| threonyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|208434081|ref|YP_002265747.1| threonyl-tRNA synthetase [Helicobacter pylori G27]
 gi|238065115|sp|B5Z9Q1|SYT_HELPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|208432010|gb|ACI26881.1| threonyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|86147528|ref|ZP_01065839.1| threonyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85834696|gb|EAQ52843.1| threonyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 642

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 156/422 (36%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   IR++       E+  P +    LW  SG +D Y +
Sbjct: 257 MQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDYQEVKGPLMMDRVLWERSGHWDKYAE 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHVF-CTEDQVQQEVKACIEMVYDTYTTFGFENIVVKLSTRPEQRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + + M+                  I E   A Y    +     L
Sbjct: 433 ----EMWDRAEADLKQALEAMEIAY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 472 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++ I        +  ++I  +L K G  V  D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAIVMGITDKQS---EYVQEIAKKLQKSGFRVKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G + +   ++ ++ R         +++ I+Y     S+
Sbjct: 576 NEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGKDLGKFKVDDFISYIQAEVSS 635

Query: 445 NR 446
            +
Sbjct: 636 RK 637


>gi|317011967|gb|ADU82575.1| threonyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|194289383|ref|YP_002005290.1| threonyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|238692758|sp|B3R4J1|SYT_CUPTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193223218|emb|CAQ69223.1| threonine tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 635

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 14/201 (6%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +T  + H  + + G+  W P G +    V   +R     
Sbjct: 231 YLHMLEE----AEKRDHRKLGKTLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLTD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG + +Y KE + + +   +     P +      IF   ++
Sbjct: 287 AGYDEVRTPQVMDRSLWEKSGHWQNY-KENMFVTESEKRDYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVS 180
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +      ++N++  S
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFCTEEQIVAEAKAFNELAFS 405

Query: 181 YLRIFHRLGLKSIPMRAESGP 201
              ++   G K + ++    P
Sbjct: 406 ---VYDDFGFKDVKVKLSLRP 423


>gi|206971420|ref|ZP_03232370.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228952703|ref|ZP_04114777.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229069894|ref|ZP_04203176.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|206733405|gb|EDZ50577.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228713297|gb|EEL65190.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228806979|gb|EEM53524.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 640

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYKYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|325997000|gb|ADZ49208.1| Threonyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 573

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 199 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 257

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 258 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 317

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 318 QDDAHIF 324


>gi|229178727|ref|ZP_04306091.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228604885|gb|EEK62342.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
          Length = 640

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEYKYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|21674935|ref|NP_663000.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|34222753|sp|Q8KAN0|SYT_CHLTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21648164|gb|AAM73342.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 657

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/417 (19%), Positives = 150/417 (35%), Gaps = 62/417 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G    + +   ++ EQ + G + +  P + + +L+  SG Y  Y       L
Sbjct: 273 GLPIWLPNGAIIRNELETFLKAEQRKRGYVPVYTPHIGNIELYKRSGHYPYYSDSQFPPL 332

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D   +   Y   P +      I+   ++SYR+LP    +    +R E      G++R
Sbjct: 333 TYKDETGREEQYLLKPMNCPHHHLIYSQTLRSYRDLPIRLTEFGTVYRHEQSGELNGLVR 392

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------------AES 199
           +R F   D++ +    +      N + ++   +F+ LG   +  R              +
Sbjct: 393 ARGFTQDDSHIYCRPDQLVDEICNAIDLTRF-VFNTLGFDEVETRLSLHDPENQSKYGGT 451

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             + G    +    AD    + F       F  P       D I  ++I  +W       
Sbjct: 452 AEVWGQAEKDVKEAADRMGIKYFIGIGEASFYGPK-----IDFIVRDAIGRKWQLGTVQV 506

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYG 318
             V  E+ FD                               ++ G+DG+ H  V +    
Sbjct: 507 DYVMPER-FD------------------------------LSYIGSDGQKHRPVVIHRAP 535

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G+M     V+     G   +W   +AP +  ++ I    +   D   ++YA+L + G  
Sbjct: 536 FGSMERFIGVLIEHTAGNFPLW---LAPVQAVVLPIA---EEVHDYAREVYAKLHEAGIR 589

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              D   E+IG +   A+L   P  +++G       +V ++    G      ++E+I
Sbjct: 590 TELDLRSEKIGKKIREAELSKIPAMLVIGRNEQEKGEVSLRRHRKGDEGSFGVDELI 646


>gi|308182296|ref|YP_003926423.1| threonyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308064481|gb|ADO06373.1| threonyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 612

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|14521542|ref|NP_127018.1| threonyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|14548274|sp|Q9UZ14|SYT_PYRAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|5458761|emb|CAB50248.1| thrS threonyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 625

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 135/332 (40%), Gaps = 50/332 (15%)

Query: 117 IFRSHIKSYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           I +  I SYRNLP   Y++ +  FR E R    G+ R R F M D ++     E +K  +
Sbjct: 304 IKKDAIISYRNLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDIEQAKEEF 363

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            K F   + +   +GL                        +  E  +  ++DF       
Sbjct: 364 KKQFKLSMEVLEGVGLTP----------------------EDYEVAIRFTEDFW-----K 396

Query: 235 ENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           E+ DF      +I    ++E W   +            D+L +   +S   I+V +   F
Sbjct: 397 EHKDFIVELVKLIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERF 456

Query: 291 GTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESS----HDGKGIIWPDSV 344
           G         T+   +G++ Y + +     GA+ RV+ A++E      ++GK  ++P  +
Sbjct: 457 GI--------TYYDENGEEKYPLILHCSPSGAIERVMYAILEKQAKLMNEGKKPMFPLWL 508

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ +I +    +   D    +  +L      V  DD  E++  +   A+    P  V
Sbjct: 509 SPIQVRVIPV---SEEYLDYALYVAGKLEGAKIRVDVDDEDERLNKKIRRAEKEWIPYIV 565

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +VG++   +  + ++ R  G + +  +EE+I 
Sbjct: 566 VVGAREKENGTITVRRREDGKQYETRIEELIK 597


>gi|295094342|emb|CBK83433.1| prolyl-tRNA synthetase, family I [Coprococcus sp. ART55/1]
          Length = 477

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      F   D K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFGIQFTDKDNKLKYVHQTSWGM-TTRLIGAIIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ +I I        +   ++  +L      V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPKVAPTQVMIIPIMQKKAGVLEKAAELREKLGAFRVKV--DDSDKSPGWKFSEQEMR 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K +  ++  +  R T  +  +SL+E+
Sbjct: 342 GIPIRVEIGPKDIEANQAVLVRRDTREKITVSLDEI 377



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 11/144 (7%)

Query: 25  LMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           ++L+ G+I + + KG  +  P G    + +   + E    TG   + +P L    L   E
Sbjct: 25  VVLKAGLIAYTNVKGCMAIKPAGYAIWELIQKQLDERFKATGVENVYMPMLIPESLLEKE 84

Query: 83  SGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-- 136
               + +  E+  +     +   + M   PT E +  D +++ I+SYR+LP  + Q    
Sbjct: 85  KDHVEGFAPEVAWVTYGGLNPLTERMCVRPTSETLFCDFYKNDIQSYRDLPRVYNQWCSV 144

Query: 137 LKFRDELRPRFGVMRSREFLMKDA 160
           +++  E RP    +RSREFL ++ 
Sbjct: 145 MRWEKETRP---FLRSREFLWQEG 165


>gi|313905495|ref|ZP_07838859.1| prolyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313469679|gb|EFR65017.1| prolyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 479

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    F   ++      +   D    +V   S+G+   RV+ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFDDIFAQAYDVQYTDKDNTLKHVHQTSWGM-TTRVIGAMIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ +I I+   +   D   +I  +L+  G  V  DD  ++ G +F+  ++ 
Sbjct: 284 VLPPHIAPTQVMIIPIRQDAEGVLDKAVEIKEKLATAGIRVDLDDTDKRPGWKFSEQEMR 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K V +    +  R T  +  +S++E+
Sbjct: 344 GIPVRVELGPKDVENGSAVLVRRDTREKLVVSIDEI 379



 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  +  P G    +N+   + E    TG   + +P L   +L   E+   + +  E+  
Sbjct: 38  KGCMAIKPAGYAIWENIQHNLDERFKATGVKNVYMPMLIPENLLNKEAELVNGFAPEVAW 97

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    A++  + +   PT E +  D +   I+SY++LP  + Q    L++    RP    
Sbjct: 98  VTHGGAEKLQERLCIRPTSETLFCDFYAKDIQSYKDLPKVYNQWCSVLRWEKTTRP---F 154

Query: 150 MRSREFLMKDA 160
           +RSREFL ++ 
Sbjct: 155 LRSREFLWQEG 165


>gi|300812909|ref|ZP_07093302.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496107|gb|EFK31236.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 643

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 161/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  +  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + +     + ++H   +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQVQEEFARTLQIIMDVYHDFDINDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ GADG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFEL----SYIGADGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N+ AH     D  +K+   L   G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNLDAH----SDYAKKVRDELVAKGFRAEIDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +     P  +++G   ++   V ++   T  +   SL E ++  S
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLAEFMDKLS 633


>gi|154344603|ref|XP_001568243.1| threonyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065580|emb|CAM43350.1| putative threonyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 789

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML- 94
           S G   WLP G +  + +   +R++  R G  E+  P + S+ LW+ SG ++ Y   M  
Sbjct: 305 SPGSAFWLPHGARIYNTLVEFLRKKYRRCGFQEVISPNMYSSKLWMVSGHWEKYADNMFC 364

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
              ++ D  +   P +      +F S   SYR LP  +    +  R+EL     G+ R R
Sbjct: 365 TKCEKEDFGL--KPMNCPGHCIMFASQPHSYRELPIRYADFGVLHRNELSGALTGLTRVR 422

Query: 154 EFLMKDAYSF 163
            F   DA+ F
Sbjct: 423 RFQQDDAHIF 432


>gi|197118372|ref|YP_002138799.1| threonyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|238690868|sp|B5EBX9|SYT_GEOBB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|197087732|gb|ACH39003.1| threonyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 636

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 158/404 (39%), Gaps = 43/404 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  + G   +  P +   +LW  SG Y++Y +E +   
Sbjct: 263 GLVIWHPKGAMLRTILEDFERKEHLKRGYDIVLGPQILKTELWQRSGHYENY-RENMYFT 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++++    P +      I+RS ++SYR+LP  ++++    R E      G++R R F 
Sbjct: 322 TVDEQSYGVKPMNCLAHMMIYRSQLRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             DA+    TPE        +  FV+                     + G    EF +  
Sbjct: 382 QDDAHIL-CTPEQLDAEIKGVIQFVT--------------------EVMGIFGFEFEMEL 420

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            T   +   S D  +    +      D      I E   A Y    D+   KL D+L  +
Sbjct: 421 STRPEKSIGSDDAWELATNALLNALKDSGRPYEINEGDGAFYGPKIDI---KLRDAL--D 475

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSH 333
           +R     I+    F    ++ L    T+  ADG K   V +    +GA+     V+    
Sbjct: 476 RRWQCATIQCD--FTLPERFDL----TYVDADGEKKRPVMVHRVILGAIERFIGVLIEHF 529

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    +P  +AP + +++ +   +Q+     +  + +L   G  V  D   E++G +  
Sbjct: 530 AGN---FPTWLAPVQATIVTV-TDNQI--PYAQAAFDKLRAAGIRVQKDFRNEKLGFKIR 583

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            A L   P  ++VG K V    +  + R     E M+ E+ +++
Sbjct: 584 EAQLQKIPYMLVVGDKEVESGMLAPRFRDGKNLESMTPEQFVSF 627


>gi|319794591|ref|YP_004156231.1| threonyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315597054|gb|ADU38120.1| threonyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 635

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 148/422 (35%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + + G+  W P G      V   +R     TG  E+  P +    LW ++G + +Y  
Sbjct: 255 IDEVAPGVVFWHPKGWAVWQAVEQYMRGIYRDTGYWEVKGPQILDKSLWEKTGHWQNYRD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      IF+S ++SYR+LP  + +     R+E      G+M
Sbjct: 315 NMF-TTESEKREYALKPMNCPGHVLIFKSDLRSYRDLPLRYGEFGQCHRNEPSGALHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F  T +              +++   G   I  +  + P   +G D  
Sbjct: 374 RVRGFTQDDGHIF-CTEDQILDECIAYTEQLQKVYADFGFTDILYKVATRPENRVGSD-- 430

Query: 208 HEFIVLADTGETQVFCS--KDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                L D  E  V  S  +  +DF I P +   +   I                     
Sbjct: 431 ----ELWDKAEHAVMESLRRSGVDFIISPGDGAFYGPKIEYT------------------ 468

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             L D++    +     ++       G +Y    S       G+ H V +    +G++  
Sbjct: 469 --LRDAIGRQWQCGTMQVDFNTAERLGGEYVTESS-------GRAHPVMLHRAIVGSLER 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   H G    W   +AP +++++NI        D   ++   L   G  V  D  
Sbjct: 520 FIGMLIEHHSGALPAW---LAPVQVAVLNISEGQA---DYAAQVAKTLQNQGLRVQLDLH 573

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+I  +     L   P  ++VG K      V ++ R       MSLE  +       ++
Sbjct: 574 NEKITYKIRKHSLQKLPYILVVGDKEKEAGAVAVRARGNQDLGAMSLESFVQRLVQDVAD 633

Query: 445 NR 446
            R
Sbjct: 634 KR 635


>gi|218709221|ref|YP_002416842.1| threonyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|218322240|emb|CAV18357.1| Threonyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 655

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 156/422 (36%), Gaps = 48/422 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   IR++       E+  P +    LW  SG +D Y +
Sbjct: 270 MQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDYQEVKGPLMMDRVLWERSGHWDKYAE 329

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 330 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 388

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             +   G ++I ++  + P   +G D  
Sbjct: 389 RVRGFTQDDAHVF-CTEDQVQQEVKACIEMVYDTYTTFGFENIVVKLSTRPEQRVGSD-- 445

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  + + M+                  I E   A Y    +     L
Sbjct: 446 ----EMWDRAEADLKQALEAMEIAY--------------EIQEGEGAFYGPKIEF---TL 484

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D + H   M    I G++  
Sbjct: 485 HDCLD-------RAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLER 534

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++ I        +  ++I  +L K G  V  D  
Sbjct: 535 FIGILIEEYAG---FFPTWLAPEQAIVMGITDKQS---EYVQEIAKKLQKSGFRVKADLR 588

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G + +   ++ ++ R         +++ I+Y     S+
Sbjct: 589 NEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGKDLGKFKVDDFISYIQAEVSS 648

Query: 445 NR 446
            +
Sbjct: 649 RK 650


>gi|160943529|ref|ZP_02090762.1| hypothetical protein FAEPRAM212_01020 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445208|gb|EDP22211.1| hypothetical protein FAEPRAM212_01020 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103777|emb|CBL01321.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 594

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I+E++   G + +  P + + +L+  SG +D Y + M   
Sbjct: 213 RGLPMFLPAGYTVWQELENYIKEKERARGYLHVMTPCIGTVNLYKTSGHWDHYRENMFPA 272

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ +   SYR+LP    +I   FR E      G+ R R F
Sbjct: 273 MEMEGESYVLRPMNCPHHMMIYANRPHSYRDLPMRIGEIAHDFRYESSGTLKGIERGRHF 332

Query: 156 LMKDAYSFDLTPEGSK 171
              DA+ F  TPE  K
Sbjct: 333 CQNDAHLF-CTPEQIK 347


>gi|313904501|ref|ZP_07837877.1| threonyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313470643|gb|EFR65969.1| threonyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 591

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  WLP G K  +++ +  R      G  E+S P L ++ LW  SG +  Y 
Sbjct: 196 MFDETAPGMPYWLPRGWKLFNSLLSFWRGIHEEHGYQEISGPILSNSKLWQTSGHWGHYK 255

Query: 91  KEMLRL-ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             M  +  ++ D++  Y   P +      +++S ++SYR+LPF   Q+    R E     
Sbjct: 256 DNMFIIPGEKEDESDYYAAKPMNCPNAILVYKSRLRSYRDLPFRVAQVDNIHRKEKSGEL 315

Query: 148 -GVMRSREFLMKDAY 161
            G+ R + F   DA+
Sbjct: 316 NGLFRVQMFRQDDAH 330


>gi|300790769|ref|YP_003771060.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299800283|gb|ADJ50658.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 390

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G     ++   +R  + R G   +  P L   +L+  SG +  Y  EM    
Sbjct: 23  GLPYWLPDGAIVRHSLEEYVRNLERRAGYQHVHSPVLGKRELYEISGHWSHYRDEMYPPM 82

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-RSREFL 156
           D   + ++  P+       I+RS  +SYR LP    +I   +R EL    G + R R   
Sbjct: 83  DVGGEQLVLRPSLCPHHALIYRSRGRSYRELPLRMAEIGGMYRSELSGVLGGLSRVRAIQ 142

Query: 157 MKDAYSF 163
           + DA+ F
Sbjct: 143 LNDAHVF 149


>gi|91793061|ref|YP_562712.1| threonyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123060978|sp|Q12NI7|SYT_SHEDO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91715063|gb|ABE54989.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella
           denitrificans OS217]
          Length = 642

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++  +    E+  P +    LW  SG +D Y  
Sbjct: 256 MQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTYQEVKGPLMMDRALWERSGHWDKYSD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTNSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +  K   + + + Y   +   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIFCTDDQVQKEVSDCIQMVY-DTYATFGFENIVVKLSTRPEKRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    Q   + +     +P E   +   I                       L
Sbjct: 432 -DMWDRAEEALKQALIANEIEFEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPSRLGATYVAEDNTRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   W   +AP ++ ++NI        D  + +     + G    +D  
Sbjct: 521 FLGILIEEYAGKFPTW---LAPMQVVVMNITDKQA---DYVQDVVKIFKEQGIRASFDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTR 611


>gi|331270273|ref|YP_004396765.1| proline-tRNA ligase [Clostridium botulinum BKT015925]
 gi|329126823|gb|AEB76768.1| proline-tRNA ligase [Clostridium botulinum BKT015925]
          Length = 478

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGV-TTRLIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +AP ++ ++ I  H +   +  E++ + ++K+   V  D   +  G +F   ++ 
Sbjct: 284 KLPPRIAPLQVVIVPIAQHKEGVLEKAEELRSNIAKIA-RVKVDSSDKMPGWKFNEYEMK 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P+++ VG K + +++V +  R T  +  +S++E+
Sbjct: 343 GVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDEL 378


>gi|91201672|emb|CAJ74732.1| strongly similar to threonyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 640

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+E  R G   +  P +   +LW  SG +D Y + M    
Sbjct: 261 GLAFWHPKGARMRSIIEDFWRQEHFRRGYEILYSPHIAKINLWKTSGHWDFYRESMYSPI 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D +    I  P +      I+++ + SYR+LP  + ++   +R E      G++R R F 
Sbjct: 321 DVDGHEYILKPMNCPFAVLIYKTKLHSYRDLPLRWGELGTVYRYERSGVLHGLLRVRGFT 380

Query: 157 MKDAYSFDLTPE 168
             DA+ F  TP+
Sbjct: 381 QDDAHIF-CTPD 391


>gi|313112983|ref|ZP_07798626.1| threonyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624703|gb|EFQ08015.1| threonyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 594

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I+E++   G + +  P + + +L+  SG +D Y + M   
Sbjct: 213 RGLPMFLPAGYTVWQELENYIKEKERARGYLHVMTPCIGTVNLYKTSGHWDHYRENMFPA 272

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ +   SYR+LP    +I   FR E      G+ R R F
Sbjct: 273 MEMEGESYVLRPMNCPHHMMIYANRPHSYRDLPMRIGEIAHDFRYESSGTLKGIERGRHF 332

Query: 156 LMKDAYSFDLTPEGSK 171
              DA+ F  TPE  K
Sbjct: 333 CQNDAHLF-CTPEQIK 347


>gi|293977850|ref|YP_003543280.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri DMIN]
 gi|292667781|gb|ADE35416.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri DMIN]
          Length = 489

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++    + G  +S      +    G   YV   S+GI + R++ A+I +  D  G+
Sbjct: 231 GKSLQIATSHFLGQNFSKAFDVRYTTEKGNKEYVWATSWGI-STRLIGAIIMTHSDDNGL 289

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIY----ARLSKVGCDVFWDDMGEQI-GSQF 392
           I P  +AP +I +I + K  +Q+  +  EK+       L K G  + +D       G +F
Sbjct: 290 ILPPKIAPLQIVIIPVYKTQEQL--NLIEKLVLPLKESLEKRGISIKYDKRTYYTPGWKF 347

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ G P+++ +G K +    VE+  R T
Sbjct: 348 NEYEIKGIPIRITIGKKDIDRGTVEVVRRDT 378



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 96  LADRNDK---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           + D+N K    +I  PT E ++ + ++  I SYR+LP  F Q     R E R RF  +R+
Sbjct: 105 IVDKNSKLEDELIVRPTSETIIWNSYKRWINSYRDLPIRFNQWANIIRWERRTRF-FLRT 163

Query: 153 REFLMKDAYS 162
            EFL ++ ++
Sbjct: 164 SEFLWQEGHT 173


>gi|78212568|ref|YP_381347.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Synechococcus
           sp. CC9605]
 gi|123756917|sp|Q3AKU0|SYT_SYNSC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78197027|gb|ABB34792.1| threonyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 611

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 150/393 (38%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARIRLLIEEFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYAESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
           + +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 EVDEREYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       K+     RI       +  +   + P   IG D   +   
Sbjct: 348 TQDDAHVFCL-PEQISDEILKILDLTERILSAFDFSNYEINLSTRPEKSIGEDAVWD--- 403

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +    K +                    I E   A Y    D+   K+ D++ 
Sbjct: 404 LATKGLIEALERKGWA-----------------YKIDEGGGAFYGPKIDL---KIEDAIG 443

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++    F    ++ L     +  ADG      M    I G++     ++  
Sbjct: 444 RMWQCSTIQLD----FNLPERFEL----DYIAADGSKQRPIMIHRAIFGSLERFFGIMTE 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP ++ L+ +   D+V +   E++  +L+K G     D  G+++G  
Sbjct: 496 NYAGDYPFW---LAPEQVRLLPVT--DEV-QPYAEQLLDQLTKAGVRATVDRSGDRLGKL 549

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               + +  P+  ++G+K    + V ++ R  G
Sbjct: 550 IRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDG 582


>gi|301053905|ref|YP_003792116.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300376074|gb|ADK04978.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 639

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + +   +RE Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQIIRNELEVFLREIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TPE
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPE 394


>gi|262038762|ref|ZP_06012119.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261747220|gb|EEY34702.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 636

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +H  G   ++P G + ++ +  I R+E  +    E+  P +   +LW  SG + +Y +
Sbjct: 254 LDEHGPGFPFFMPKGMELMNKLQEIWRKEHKKRKYEEIRTPVMLDKELWEISGHWFNY-R 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +  ++ ++K     P +       +++++ SY++LP  + ++ L  R E      G+M
Sbjct: 313 ENMYTSEIDEKVYAIKPMNCPGSIIAYKNNLHSYKDLPLKYGEMGLVHRHEFSGALHGLM 372

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 373 RVRAFTQDDAHVF 385


>gi|224062355|ref|XP_002195014.1| PREDICTED: similar to probable threonyl-tRNA synthetase 2,
           cytoplasmic [Taeniopygia guttata]
          Length = 719

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 166/417 (39%), Gaps = 57/417 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IR E  R    E+  P + ++ LW  SG +  Y 
Sbjct: 330 FFHDLSPGSCFFLPRGAFLYNTLVDFIRGEYRRRNFTEVVSPNVFNSKLWEASGHWQHYS 389

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       +   I  P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 390 ENMFSFEVEKETFAI-KPMNCPGHCLMFAHRPRSWRELPLRLADFGVLHRNELSGTLSGL 448

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLS 207
            R R F   DA+ F  T E  +    K  + +L+  + +   +  +   + P    GDL 
Sbjct: 449 TRVRRFQQDDAHIF-CTMEQIEEEI-KDCLDFLKSVYAVFGFTFQLHLSTRPENYLGDLE 506

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
                + D  E Q+             +N       SLN+  EQW       A Y    D
Sbjct: 507 -----IWDHAEKQL-------------QN-------SLNNFGEQWNLNPGDGAFYGPKID 541

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   K+ D++    + +   ++    F    +++L    T+ G DG D    V +    +
Sbjct: 542 I---KIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVGKDGDDKKRPVIIHRAIL 590

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCD 378
           G++  + A++  ++ GK   WP  ++P ++ ++ +  A +Q  +  C++ +        D
Sbjct: 591 GSVERMIAILAENYGGK---WPFWLSPRQVMVVPVGPASEQYAQQVCDQFFEAGFMSDVD 647

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   D    +  +   A L  +   ++VG K  +++ V ++ R   +  ++S+   I
Sbjct: 648 L---DQSCTLNKKIRNAQLAQYNFILVVGEKEKANNAVNVRTRDNKVHGEISVSSTI 701


>gi|163814965|ref|ZP_02206352.1| hypothetical protein COPEUT_01115 [Coprococcus eutactus ATCC 27759]
 gi|158449648|gb|EDP26643.1| hypothetical protein COPEUT_01115 [Coprococcus eutactus ATCC 27759]
          Length = 477

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      F   D K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFGIQFTDKDNKLKYVHQTSWGM-TTRLIGAIIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  VAP ++ +I I        +   ++  +L      V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPKVAPTQVMIIPIMQKKAGVLEKAAELREKLGAFRVKV--DDSDKSPGWKFSEQEMR 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K +  ++  +  R T  +  +SL+E+
Sbjct: 342 GIPIRVEIGPKDIEANQAVLVRRDTREKITVSLDEI 377



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 11/144 (7%)

Query: 25  LMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           ++L+ G+I + + KG  +  P G    + +   + E    TG   + +P L    L   E
Sbjct: 25  VVLKAGLIAYTNVKGCMAIKPAGYAIWELIQKQLDERFKATGVENVYMPMLIPESLLEKE 84

Query: 83  SGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-- 136
               + +  E+  +     +   + M   PT E +  D +++ I+SYR+LP  + Q    
Sbjct: 85  KDHVEGFAPEVAWVTYGGLNPLTERMCVRPTSETLFCDFYKNDIQSYRDLPKVYNQWCSV 144

Query: 137 LKFRDELRPRFGVMRSREFLMKDA 160
           +++  E RP    +RSREFL ++ 
Sbjct: 145 MRWEKETRP---FLRSREFLWQEG 165


>gi|192360042|ref|YP_001982990.1| threonyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|238692463|sp|B3PL16|SYT_CELJU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190686207|gb|ACE83885.1| threonyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 642

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 85/429 (19%), Positives = 165/429 (38%), Gaps = 53/429 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIRE 59
           ++ K +L +L+E    A+    KL  +  + H    + G+  W P G      +   +R 
Sbjct: 227 KQLKAYLNLLEEA---AKRDHRKLAKKFDLFHLQDEAPGMVFWHPKGWTLWQQIEQYMRA 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIF 118
           +QN  G  E+  P +    LW +SG +++Y + M    +++ D A+   P +      IF
Sbjct: 284 KQNDWGYQEVRTPLIMDRVLWEKSGHWENYRENMFTTESEKRDFAV--KPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE--GSKHSYN 175
              ++S+++LP    +     R+E      G+MR R F+  DA+ F    +      ++N
Sbjct: 342 NHGLRSHKDLPLRLAEFGSCHRNEASGALHGIMRVRGFVQDDAHIFCTEDQVVAEVAAFN 401

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +M  S   ++   G   I ++    P     S E    A+ G      +       +P E
Sbjct: 402 QMLKS---VYDDFGFTDIAVKLSLRPEKYAGSLETWNKAEEGLRTALRAAGLEWEELPGE 458

Query: 236 NTDFDDIISL---NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              +   I     +++   W         V  E+L      +  V  R + +        
Sbjct: 459 GAFYGPKIEYQIKDALGRSWQCGTIQLDYVLPERLDAEYVADDNVRKRPVML-------- 510

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                            H   +GS+     R +  +IE  ++G   +W   ++P ++ + 
Sbjct: 511 -----------------HRAILGSF----ERFLGILIE-HYEGSFPVW---LSPVQVVVA 545

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           NI        +  +++   L + G  V  D   E+IG +     +   P  ++VG K V 
Sbjct: 546 NITDSQA---EYVKRVEKALREQGIRVIADLRNEKIGFKIREHTIQRVPYLLVVGDKEVE 602

Query: 413 DSKVEIKHR 421
           +  + ++ R
Sbjct: 603 NQSLAVRTR 611


>gi|90410628|ref|ZP_01218644.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90328869|gb|EAS45153.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 426

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   IRE+       E+  P +    LW  SG +D Y +
Sbjct: 256 MQQEAPGMVFWHHNGWTIFRELEVFIREKLTEYEYQEVKGPLMMDRVLWERSGHWDKYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGACHRNEPSGALHGIM 374

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 375 RVRGFTQDDAHVF 387


>gi|58699329|ref|ZP_00374107.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58534152|gb|EAL58373.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 356

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 221 RNKDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRK 280

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 281 KLINNGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 340

Query: 120 SHIKSYRNLP 129
           SH +SYR+LP
Sbjct: 341 SHTRSYRDLP 350


>gi|300711550|ref|YP_003737364.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299125233|gb|ADJ15572.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 640

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +  HS G   + P G      +   IR + +  G  E+  P L   +LW ESG  D +G 
Sbjct: 254 VPDHSPGCPHYHPNGMTIRRELEEYIRTQNDALGYEEVRTPELNKKELWEESGHLDFFGS 313

Query: 92  E-MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           E    L + N+      P +      I+   ++SYR+LP  F +    +R+E      G+
Sbjct: 314 EGEFFLWEENETEYGLKPMNCANHAYIYDQQVRSYRDLPVRFSEFGNVYRNEQSGELSGL 373

Query: 150 MRSREFLMKDAYSF 163
           +R R     D ++F
Sbjct: 374 LRVRGMTQDDGHAF 387


>gi|238882425|gb|EEQ46063.1| threonyl-tRNA synthetase [Candida albicans WO-1]
          Length = 706

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +   +R E  + G  E+  P + S  LW  SG + +Y 
Sbjct: 313 IFNEMSPGSAMWLPHGARIYNTLVDTLRTEYRKRGYEEVITPNMYSTKLWETSGHWQNYK 372

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 373 ENMFSF-EVEKETFGLKPMNCPGHCILFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 431

Query: 150 MRSREFLMKDAYSFDLT 166
            R R F   DA+ F  T
Sbjct: 432 TRVRRFQQDDAHIFCTT 448


>gi|68491354|ref|XP_710514.1| hypothetical protein CaO19.5685 [Candida albicans SC5314]
 gi|46431727|gb|EAK91259.1| hypothetical protein CaO19.5685 [Candida albicans SC5314]
          Length = 706

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +   +R E  + G  E+  P + S  LW  SG + +Y 
Sbjct: 313 IFNEMSPGSAMWLPHGARIYNTLVDTLRTEYRKRGYEEVITPNMYSTKLWETSGHWQNYK 372

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 373 ENMFSF-EVEKETFGLKPMNCPGHCILFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 431

Query: 150 MRSREFLMKDAYSFDLT 166
            R R F   DA+ F  T
Sbjct: 432 TRVRRFQQDDAHIFCTT 448


>gi|293604689|ref|ZP_06687089.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292816858|gb|EFF75939.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 650

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      V   +R   N  G  E+  P +    LW ++G +D+Y + M  
Sbjct: 264 APGLIFWHPKGWALWQQVEQYMRAIYNNNGYQEVKAPQILDISLWKKTGHWDNYRENMFT 323

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               N    +YG  P +      IF + + SYR LP  + +     R+E      G+MR 
Sbjct: 324 TESEN---RVYGLKPMNCPGHVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRV 380

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R F   D + F  T E  +           +++   G   +  +  + P   IG D
Sbjct: 381 RGFTQDDGHIF-CTEEQLQDECADFTALLQKVYRDFGFTEVLYKVATRPEKRIGSD 435


>gi|121601812|ref|YP_988945.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|166223323|sp|A1USJ2|SYT_BARBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120613989|gb|ABM44590.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 658

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 17/213 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  +   G+  W P G K   N+ + +R   
Sbjct: 233 KAYLNMLEE----AEKRDHRRLGREMDLFHFQEEGPGMIFWHPKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAM-IYGPTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M +      D ND+ +    P +      
Sbjct: 289 DEHKYDEVNAPQVLDKSLWETSGHWGWYQENMFKTIPATNDWNDEHVYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLLHRYEPSGSLHGLMRVRSFTQDDAHVF-CTDEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           K+    L  +   G + I ++  + P   +G D
Sbjct: 408 KINDLILSTYADFGFEEIILKLSTRPEKRVGSD 440


>gi|325283002|ref|YP_004255543.1| threonyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314811|gb|ADY25926.1| threonyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 650

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/391 (19%), Positives = 151/391 (38%), Gaps = 43/391 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I + + + G   +  P L  ++L+  SG +D Y ++M  + 
Sbjct: 268 GLPIWLPSGATIRRELERFIVDVELKNGYQHVYSPALAKSELYKISGHWDHYQEDMFPIM 327

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             + + ++  P +      I+     SYR LP    ++   +R E   +  G+ R R   
Sbjct: 328 HLDQEELVLRPMNCPHHIQIYAHKPHSYRELPLKIAELGTMYRYEQSGQLTGLSRVRSMT 387

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           + DA+ F   P+  +  +  +      ++  LG K    R              + L D 
Sbjct: 388 LNDAHIF-CRPDQIQEEFKAVVRMIQEVYEVLGFKDYSYR--------------LSLRDP 432

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-----YAATSDVHNEKLFDSL 271
            +T+ +   D M     +      + +S +  V+ + +P     Y    DV   ++  +L
Sbjct: 433 QDTEKYYQDDQM---WDTAEAQLREALS-DLGVDYYESPGDAAFYGPKLDV---QVRSAL 485

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
            +++ +S   ++    F    K+ L     +   DG      M   G I  M  + A + 
Sbjct: 486 GKDETISTAQLD----FLLPQKFDL----EYVAEDGSRQRPVMIHRGVISTMERMTAFLI 537

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            +  G    W   +AP ++ +I I           E++ A L   G     D   +++ +
Sbjct: 538 ENTAGNFPFW---LAPRQVMIIPIADRHNAY---AEELRAELVAAGLRAEVDTSSDRMNA 591

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   A+L   P+ +IVG K      V ++ R
Sbjct: 592 KVRDAELKKIPVMLIVGDKEQEARAVSVRER 622


>gi|307292835|ref|ZP_07572681.1| Proline--tRNA ligase [Sphingobium chlorophenolicum L-1]
 gi|306880901|gb|EFN12117.1| Proline--tRNA ligase [Sphingobium chlorophenolicum L-1]
          Length = 527

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 73/342 (21%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E V+   F   ++S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 133 EEPLVVRPTSETVIGAAFSRWVQSWRDLPVLINQWANVVRWEMRTRM-FLRTAEFLWQEG 191

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   + + +     KM   Y R F    + ++P+ A   P                   
Sbjct: 192 HTAHSSVDEAMEETLKMLEVY-RSFAEECV-ALPVIAGEKP------------------- 230

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                         EN  F   ++  SI                        E      +
Sbjct: 231 --------------ENERFPGAVATYSI------------------------EAMMQDGK 252

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + GT +S   +  F+ A+G+    Q  S+G+ + R++  +I    D  G+  
Sbjct: 253 ALQAGTSHFLGTTFSSAQNIRFQNAEGQQELAQTTSWGM-STRMIGGLIMVHGDDDGLRV 311

Query: 341 PDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD- 396
           P  VAP++I ++ +      D    D C ++   L++   DVF + +   +  + A A  
Sbjct: 312 PPRVAPYQIVVVPMLRDTDEDAAVLDYCGELVTELNR--QDVFREPVRALLDRRPAKAAN 369

Query: 397 ------LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                   G P+ + VG + V+   V +  R    RED  L+
Sbjct: 370 KRWGWVKKGAPVVIEVGGRDVAGGNVSVIRRDRLYREDGKLD 411


>gi|257440090|ref|ZP_05615845.1| threonine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257197442|gb|EEU95726.1| threonine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 611

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I+E++   G + +  P + + +L+  SG +D Y + M   
Sbjct: 228 RGLPMFLPAGYTVWQELENYIKEKERARGYLHVMTPCIGTVNLYKTSGHWDHYRENMFPA 287

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ +   SYR+LP    +I   FR E      G+ R R F
Sbjct: 288 MEMEGESYVLRPMNCPHHMMIYANRPHSYRDLPMRIGEIAHDFRYESSGTLKGIERGRHF 347

Query: 156 LMKDAYSFDLTPEGSK 171
              DA+ F  TPE  K
Sbjct: 348 CQNDAHLF-CTPEQIK 362


>gi|257124962|ref|YP_003163076.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257048901|gb|ACV38085.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 636

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +H  G   ++P G +  + +  I R E  + G  E+  P +   +LW  SG + +Y +
Sbjct: 254 VDEHGPGFPFFMPKGVELFNKLQEIWRVEHKKRGYQEIKTPIMLDKELWEISGHWFNY-R 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +  +  ++K     P +       +++++ SY++LP  + ++ L  R E      G+M
Sbjct: 313 ENMYTSTIDEKEYAIKPMNCPGSIIAYKNNLHSYKDLPLKYGEMGLVHRHEFSGALHGLM 372

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 373 RVRAFTQDDAHVF 385



 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 17/161 (10%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDG 335
           +G I+  GT    ++LP     ++ GADG+ H    +    YG    R +  +IE     
Sbjct: 471 IGRIWQCGTIQLDFNLPARFEMSYIGADGEKHEPVMIHRAMYG-SLERFIGILIEHYAGA 529

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
               +P  +AP +  ++ I + +QV     ++++ +L   G  V  D   E+IG +   A
Sbjct: 530 ----FPTWLAPVQARILTI-SDEQV--PFAKELFIKLQDAGIRVELDTRVEKIGYKIREA 582

Query: 396 D-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           + +   P+Q+I+G   V++++V ++   +   +++S++E+I
Sbjct: 583 NGVQKIPVQLIIGKNEVANNEVNVRRFGSQDSKNVSVDEII 623


>gi|309782526|ref|ZP_07677250.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918863|gb|EFP64536.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 580

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I ++S G   W P G      +   +R      G  E+  P +    LW ++G +D Y +
Sbjct: 255 IDEYSPGTVFWHPKGWTLWQEIEQYMRRVYRENGYQEVKGPQILDKTLWEKTGHWDKY-R 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +      I++  IKSYR+LP  F +     R+E      G+M
Sbjct: 314 ENMFITESEKREYALKPMNCPGHILIYKQGIKSYRDLPLRFGEFGACHRNEPSGGLHGIM 373

Query: 151 RSREFLMKDAYSF 163
           R R F   D + F
Sbjct: 374 RVRGFTQDDGHIF 386


>gi|290980243|ref|XP_002672842.1| predicted protein [Naegleria gruberi]
 gi|284086421|gb|EFC40098.1| predicted protein [Naegleria gruberi]
          Length = 720

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H++S G   +LP G +  + +   IR+E  + G  E+  P +   +LW  SG +  Y 
Sbjct: 326 FFHEYSPGTPFFLPHGTRLFNKLVEFIRKEYRKRGYDEVITPQMFQKELWETSGHWQHYK 385

Query: 91  KEMLRLAD---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            +M  + +     ++ +   P +      +F S I+SYR LP          R+E R   
Sbjct: 386 DDMFTVIEGTQHKEETIGIKPMNCPAHCLMFDSKIRSYRELPVRLADFSPLHRNEPRGSL 445

Query: 148 -GVMRSREFLMKDAYSF 163
            G+ R R F   D++ F
Sbjct: 446 TGLTRVRRFHQDDSHIF 462


>gi|256786722|ref|ZP_05525153.1| threonyl tRNA synthetase [Streptomyces lividans TK24]
 gi|289770616|ref|ZP_06529994.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289700815|gb|EFD68244.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 421

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 164/418 (39%), Gaps = 45/418 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   +RE + R G   +  P L   +L+  SG ++ Y  +M    
Sbjct: 39  GLPYWLPDGAVVRHTLEEYVREAERRAGYRHVYSPVLGKRELYEISGHWEHYRDDMFPPM 98

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-RSREFL 156
           +   + ++  P+       ++RS  +SYR LP    ++   +R E     G + R R   
Sbjct: 99  ELGAEEVVLRPSLCPHHALVYRSRARSYRELPLRIAELGAMYRSEPSGVLGGLSRVRAIH 158

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLAD 215
           + DA+ F  TP+ +            R    LG+++   R    GP G     +++   +
Sbjct: 159 LNDAHIF-CTPDQAAAEARAALGLIRRAHADLGIRAARHRLSLPGPGG-----KYVADPE 212

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                    ++ +D  +P E             VE   A Y    DV  E   D+     
Sbjct: 213 LWRRATALLEEALDG-LPYEA------------VEGEAAFYGPKIDVQIE---DAAGRES 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSH 333
            +S   I+      FG +Y         G DG  H  V +    IG++ R VA +IE +H
Sbjct: 257 TLSTVQIDFHQPERFGLRY--------LGPDGARHRPVMVHRSVIGSVERAVAHLIE-AH 307

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV-FWDDMGEQIGSQF 392
            G    W   +AP ++ ++ +       R+A   +  + + +G      D     +G++ 
Sbjct: 308 GGAFPAW---LAPVQLVVLPVAG---AQREAAYALVRQATDLGLRAEVADPERGSLGARV 361

Query: 393 AVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             A  +  P Q ++G++   D   V+++ R       +S  E+++  + R     P L
Sbjct: 362 RAARKV--PYQAVIGAREAQDGDLVDVRLRDGRRPGQLSGTELLHRITDRVEARGPEL 417


>gi|169236481|ref|YP_001689681.1| threonyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|73921305|sp|Q9HP27|SYT_HALSA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229470722|sp|B0R6G6|SYT_HALS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167727547|emb|CAP14335.1| threonine--tRNA ligase [Halobacterium salinarum R1]
          Length = 640

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+  L  ++  +R   +  G  E+  P L   +LW +SG YD+Y  +M  L 
Sbjct: 262 GLPLYHPNGKTVLRELSEYVRGLNSEMGYDEVETPHLFRTELWKQSGHYDNYVDDMF-LL 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF     SYR+LP  +++    +R E R    G+ R   F 
Sbjct: 321 DVNDEEYGLKPMNCPGHATIFNEGSWSYRDLPVRYFEDGKVYRKEQRGELSGLSRVWAFT 380

Query: 157 MKDAYSF 163
           + D + F
Sbjct: 381 IDDGHVF 387


>gi|158314451|ref|YP_001506959.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158109856|gb|ABW12053.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 428

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   IR  + R G   +  P L   +L+  SG +  Y  +M    
Sbjct: 35  GLPYWLPDGAAVRHTLEEYIRTAERRAGYQHVYSPVLGKRELYEISGHWSHYSDDMFPPM 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D   + ++  P+       I+RS   SYR+LP    ++   +R EL     G+ R R   
Sbjct: 95  DLGGEQIVLRPSLCPHHALIYRSRSHSYRDLPLRIAELGGMYRSELSGVLGGLTRVRAIH 154

Query: 157 MKDAYSF 163
           + DA+ F
Sbjct: 155 LNDAHIF 161


>gi|295105820|emb|CBL03363.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 637

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 14  NPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           N  +AE   H+ + R   I+        G+  +LP G + +  +   +R +    G  E+
Sbjct: 231 NLEEAEKRDHRKLGRELGIYVMDPLAGAGLPLYLPKGARIIRTLQEWLRRDLYTRGYEEV 290

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYG--PTHEEVMTDIFRSHI 122
             P + +AD+W  SG Y  Y + M         D N +   Y   P +      +++S +
Sbjct: 291 ITPHIYNADVWKTSGHYGFYKENMYFFEINEGDDENPRMTEYAVKPMNCPGHVMLYKSEL 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            SYR+LP  +++    +R E+     G++R+R F   DA+ F
Sbjct: 351 HSYRDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVF 392


>gi|241955201|ref|XP_002420321.1| threonyl-tRNA synthetase, cytoplasmic, putative [Candida
           dubliniensis CD36]
 gi|223643663|emb|CAX41396.1| threonyl-tRNA synthetase, cytoplasmic, putative [Candida
           dubliniensis CD36]
          Length = 706

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +   +R E  + G  E+  P + S  LW  SG + +Y 
Sbjct: 313 IFNEMSPGSAMWLPHGARIYNTLVDTLRTEYRKRGYEEVITPNMYSTKLWETSGHWQNYK 372

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 373 ENMFSF-EVEKETFGLKPMNCPGHCILFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 431

Query: 150 MRSREFLMKDAYSFDLT 166
            R R F   DA+ F  T
Sbjct: 432 TRVRRFQQDDAHIFCTT 448


>gi|254778840|ref|YP_003056945.1| threonyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254000751|emb|CAX28675.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Helicobacter pylori B38]
          Length = 612

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++       G   +  P +  +D+W  SG YD+Y KE +   
Sbjct: 238 GLPLWLPKGARLRKRIEDLLSRALLLRGYEPVKGPEILKSDVWKISGHYDNY-KENMYFT 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S + SYR+LP  FY+  +  R E      G++R REF 
Sbjct: 297 TIDEQEYGIKPMNCVGHIKVYQSTLHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFT 356

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 357 QDDAHIF 363


>gi|171463692|ref|YP_001797805.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238689063|sp|B1XV14|SYT_POLNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171193230|gb|ACB44191.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 640

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      V   +R    + G  E+  P +    LW +SG +++Y KE
Sbjct: 256 QEEAPGLIFWHPKGWSIWQEVEQYMRRVYQQEGYQEVKAPQILDRGLWEKSGHWENY-KE 314

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +   +  ++A    P +      I+ S + SYR LP  F +     R+E      G+MR
Sbjct: 315 NMFTTESENRAYALKPMNCPGHVQIYNSGLHSYRELPLRFGEFGQCHRNEPSGALHGLMR 374

Query: 152 SREFLMKDAYSF 163
            R F   D + F
Sbjct: 375 VRGFTQDDGHIF 386


>gi|325912604|ref|ZP_08174987.1| threonine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|325478025|gb|EGC81154.1| threonine--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 643

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 162/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 379 TLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDITDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M +          DD+       E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    +++L    ++ G DG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFNL----SYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP ++ +I  N  AH +  ++  ++    L K+G     D   E++G +
Sbjct: 533 KGAFPTW---LAPLQVKIIPVNNDAHGEYAQNVKDQ----LMKLGFRSEVDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              A     P  +++G   +  + V ++   +  +E  +L E ++  S
Sbjct: 586 IREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKALSEFVSELS 633


>gi|260891090|ref|ZP_05902353.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260859117|gb|EEX73617.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 636

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +H  G   ++P G +  + +  I R E  + G  E+  P +   +LW  SG + +Y +
Sbjct: 254 VDEHGPGFPFFMPKGVELFNKLQEIWRVEHKKRGYQEIKTPIMLDKELWEISGHWFNY-R 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +  +  ++K     P +       +++++ SY++LP  + ++ L  R E      G+M
Sbjct: 313 ENMYTSTIDEKEYAIKPMNCPGSIIAYKNNLHSYKDLPLKYGEMGLVHRHEFSGALHGLM 372

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 373 RVRAFTQDDAHVF 385



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 17/161 (10%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDG 335
           +G I+  GT    ++LP     ++ GADG+ H    +    YG    R +  +IE     
Sbjct: 471 IGRIWQCGTIQLDFNLPARFEMSYIGADGEKHEPVMIHRAMYG-SLERFIGILIEHYAGA 529

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
               +P  +AP +  ++ I + +QV     ++++ +L   G  V  D   E+IG +   A
Sbjct: 530 ----FPTWLAPVQARILTI-SDEQV--PFAKELFTKLQDAGIRVELDTRVEKIGYKIREA 582

Query: 396 DL-LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +     P+Q+I+G   V++++V ++   +   +++S++E+I
Sbjct: 583 NGDQKIPVQLIIGKNEVANNEVNVRRFGSQDSKNISVDEII 623


>gi|33592589|ref|NP_880233.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33596580|ref|NP_884223.1| threonyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|33601133|ref|NP_888693.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|81425212|sp|Q7VY64|SYT_BORPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81427196|sp|Q7W912|SYT_BORPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81431262|sp|Q7WKF7|SYT_BORBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33572235|emb|CAE41786.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33573281|emb|CAE37262.1| threonyl-tRNA synthetase [Bordetella parapertussis]
 gi|33575568|emb|CAE32646.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|332382006|gb|AEE66853.1| threonyl-tRNA synthetase [Bordetella pertussis CS]
          Length = 649

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 144/397 (36%), Gaps = 60/397 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      V   +R+     G  E+  P +    LW ++G +D+Y + M  
Sbjct: 264 APGLIFWHPKGWALWQQVEQYMRKVYQDNGYQEVKAPQILDLTLWKKTGHWDNYRENMFT 323

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               N    +YG  P +      IF + + SYR LP  + +     R+E      G+MR 
Sbjct: 324 TESEN---RVYGLKPMNCPGHVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRV 380

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---IGGDLSH 208
           R F   D + F    E         F + L +++   G   +  +  + P   IG D   
Sbjct: 381 RGFTQDDGHIF--CTEDQLQDECAAFTALLQKVYKDFGFTEVLYKVATRPEKRIGSD--- 435

Query: 209 EFIVLADTGETQVFCS--KDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               + D  ET +  S  +   +F I P E   +   +                      
Sbjct: 436 ---EIWDKAETALMESLRRTGCEFEISPGEGAFYGPKVEYT------------------- 473

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY---VQMGSYGIGAM 322
            L D++        R  + G I      +S+P+    +  D  D     V +    +G++
Sbjct: 474 -LKDAI-------GRHWQCGTI---QVDFSMPVRLGAEYVDQNDQRRPPVMLHRAILGSL 522

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  +H G    W   +AP +  +  I  H     +   +I   L K G  V  D
Sbjct: 523 ERFIGMLIENHAGAMPPW---LAPLQAVVCCISEHSA---EYAAQITQSLKKQGFRVQAD 576

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             GE+I  +     L   P  ++VG K + +  V ++
Sbjct: 577 LRGEKITRKIREHSLQKIPYLLVVGDKEMQNGTVAVR 613


>gi|189499811|ref|YP_001959281.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|259511582|sp|B3EP23|SYP_CHLPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189495252|gb|ACE03800.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 481

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G     G  ++      F+  +G   YV   S+G+ + R++ A+I +  D +G++
Sbjct: 220 KALQAGTSHNLGQNFAKAFDCQFQSKNGTLEYVWATSWGV-STRLIGALIMAHSDDRGLV 278

Query: 340 WPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADL 397
            P  +A  ++ ++ I +   Q   +    +   L+  G   F DD  +   G +FA  +L
Sbjct: 279 LPPKLASRQVVIVPILRGDKQAVAEKAHALADELNSNGIHAFVDDSEQNSPGWKFAEYEL 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G P+++ +G + +S +      R TG ++ ++L++ 
Sbjct: 339 QGIPVRLEIGPRDISSNICIAARRDTGEKQQIALDDT 375



 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E V+   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TP
Sbjct: 108 PTSETVIWASYKKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTSEFLWQEGHTAHATP 166

Query: 168 EGSKHSYNKMFVSY 181
           E ++    +M   Y
Sbjct: 167 EEAQDEVLRMINVY 180


>gi|241948445|ref|XP_002416945.1| threonyl-trna synthetase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223640283|emb|CAX44533.1| threonyl-trna synthetase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 455

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 170/430 (39%), Gaps = 63/430 (14%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P +    L
Sbjct: 36  ISSKQLLYTTDPT---SPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPLIFKTKL 92

Query: 80  WVESGRYDSYGKEMLRLADR---------NDKAMIYG--PTHEEVMTDIFRSHIKSYRNL 128
           W +SG +D+Y  +M ++            N +   YG  P +      IF    +SY+ L
Sbjct: 93  WKKSGHWDNYKDDMFKVVGNDITKEEHTDNIEEHEYGLKPMNCPSHCMIFAKFDRSYQEL 152

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRI 184
           P  +       R+E      G+ R R F   D + F   D      K++ + +  +Y   
Sbjct: 153 PVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMDQIDGEIKNTLDLIKDTY--- 209

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +  G+  I     + P       +FI   DT +      K+ ++      N        
Sbjct: 210 -NVFGINEIEFYLSTRP-----EDKFIGNIDTWDIAELQLKNVLNATAGEGNW------- 256

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             SI E   A Y    DV  +  F     NK+     I++   F    ++ L     + G
Sbjct: 257 --SIREGDGAFYGPKIDVLLKDAF-----NKKHQVGTIQLD--FQLPNRFEL----KYVG 303

Query: 305 ADGK-DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVC 361
            DGK DH   +    + G++    A++   + GK   WP  + P +  ++ I ++H  V 
Sbjct: 304 EDGKRDHQPILVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQALIVPINESHVPVA 360

Query: 362 RD----------ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +          +C+K  A L+     V  D  GE +G++   A   G+   +++G K +
Sbjct: 361 EELQKKLSGDIISCDKSIAPLTGFNFHVDVDKRGETVGARTKDAIQKGYSYLIMIGDKDI 420

Query: 412 SDSKVEIKHR 421
           ++    ++ R
Sbjct: 421 ANGTFAVRSR 430


>gi|15790739|ref|NP_280563.1| threonyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|10581281|gb|AAG20043.1| threonyl-tRNA synthetase [Halobacterium sp. NRC-1]
          Length = 650

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+  L  ++  +R   +  G  E+  P L   +LW +SG YD+Y  +M  L 
Sbjct: 272 GLPLYHPNGKTVLRELSEYVRGLNSEMGYDEVETPHLFRTELWKQSGHYDNYVDDMF-LL 330

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF     SYR+LP  +++    +R E R    G+ R   F 
Sbjct: 331 DVNDEEYGLKPMNCPGHATIFNEGSWSYRDLPVRYFEDGKVYRKEQRGELSGLSRVWAFT 390

Query: 157 MKDAYSF 163
           + D + F
Sbjct: 391 IDDGHVF 397


>gi|254431853|ref|ZP_05045556.1| threonyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197626306|gb|EDY38865.1| threonyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 575

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 147/393 (37%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    RE     G   +  P +    LW  SG  D Y + M    
Sbjct: 189 GLVFWHPRGARMRLEIENFWREAHFAAGYELLYTPHVADIGLWKTSGHLDFYSESMFGPM 248

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 249 QVDEREYQLKPMNCPFHVLTYASTLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 307

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE        +     RI  R   +S  +   + P   IG D   +   
Sbjct: 308 TQDDAHVFCL-PEQISDEILAILDLTERILSRFDFRSYEINLSTRPEKSIGEDAVWQ--- 363

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +    K +                    + E   A Y    D+   K+ D++ 
Sbjct: 364 LATQGLIEALDRKGWA-----------------YKVDEGGGAFYGPKIDL---KIEDAIG 403

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++    F    ++ L     +  ADG      M    I G++     ++  
Sbjct: 404 RMWQCSTIQLD----FNLPERFDL----HYVAADGSRQRPIMIHRAIFGSLERFFGIMTE 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP +I L+ +   D+V R   E++  +L   G     D  G+++G  
Sbjct: 456 NYAGDFPFW---LAPEQIRLLPVT--DEV-RPYAEELLGQLKGAGVRASVDHSGDRLGKL 509

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               + +  P+  ++G+K      V ++ R  G
Sbjct: 510 IRNGEQMKIPVLGVIGAKEAETGSVSLRSRRDG 542


>gi|153004735|ref|YP_001379060.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152028308|gb|ABS26076.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 681

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/406 (20%), Positives = 156/406 (38%), Gaps = 66/406 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ + G   WLP G    + +   +R   ++ G  E+  P L +  LW +SG +  Y + 
Sbjct: 290 HEVAPGAAFWLPNGTTLYNVLEDAMRRLVSKGGYQEVKTPLLFNKRLWEQSGHWGVYREN 349

Query: 93  MLRLADRNDK---------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           M  + D+            +M   P +      I++   +SYR+LP  ++ +    R+EL
Sbjct: 350 MFLVFDKESDPALPVDERLSMSLKPMNCPSHHLIYKMGKRSYRDLPIRYFTVDTLHRNEL 409

Query: 144 RPRF-GVMRSREFLMKDAYSFDL---TPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRA 197
                G+ R R+F   DA+ + +    PE        M   Y    +   L   + P++ 
Sbjct: 410 SGSLGGLTRVRQFAQDDAHLYLMESQIPEEVSRIVELMKTVYGAFGLEFSLLFSTRPVKP 469

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI---PSENTDFD---DIISLNSIVEQ 251
           E   IG D       L D  E  +  + D +  P    P +   +    D +  +S+  +
Sbjct: 470 EDR-IGDD------ALWDKAEGALRAALDRIGLPWQLNPGDGAFYGPKIDFVVTDSLGRK 522

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           W      T  +   +L  + PE                   ++ L    T+ G D  +H 
Sbjct: 523 WQ-----TCTI---QLDYAAPE-------------------RFDL----TYVGDDNHEHR 551

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G+     A++   + G    W   +AP +  ++ +    +       ++ A
Sbjct: 552 PVVIHRAVYGSFERFIAILTEHYAGAFPAW---LAPVQARVVTVSDRFEGW---AREVQA 605

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +L+  G  V  D+  +++G++   A L   P  +++G K V    V
Sbjct: 606 KLATAGWRVELDESSDKLGAKIRNAQLAKIPFALVIGEKEVEAQGV 651


>gi|304415438|ref|ZP_07396087.1| threonyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304282702|gb|EFL91216.1| threonyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 652

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 147/397 (37%), Gaps = 51/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + + +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHHNGWTIFRELESFVRAKLQEYQYQEVKGPLMMDRLLWAKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 NMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNESSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRAFTQDDAHIF-CTEQQVRAEVNNCIAMIYDMYRVFGFEKIEVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                                +    +EN D    ++ N I   W     A      E  
Sbjct: 432 ---------------------EIWTAAEN-DLAAALTENGIAFDWQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  + A++   + +     M    I G++ 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPGRLGASYIDENSQRTVPVMIHRAILGSIE 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G    +P  +AP +  +INI        D  +KI   L   G  V  D 
Sbjct: 520 RFIGILIEEYAG---CFPTWLAPVQAVVINITDKHV---DYAKKISTALQHAGIRVKTDL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIK 419
             E++G +     L   P  ++ G K V S +KV ++
Sbjct: 574 RNEKVGLKIREHTLRRVPYMLVCGDKEVESGNKVSVR 610


>gi|294677983|ref|YP_003578598.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476803|gb|ADE86191.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 648

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 93/431 (21%), Positives = 163/431 (37%), Gaps = 82/431 (19%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R  Q   G +E++ P + +  LW  SG +++Y +
Sbjct: 260 MQEEAPGQVFWHPNGWTIYTTLQDYMRRRQRADGYVEVNTPQVVNRKLWEASGHWENYRE 319

Query: 92  EMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVDEEGAREKVINALKPMNCPCHVQIFNVGLKSYRDLPLRMAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP--- 201
             G+MR R F   DA+ F +  E    +  K F+ +L  ++  LG     ++  + P   
Sbjct: 380 LHGIMRVRGFTQDDAHIFCM--EDQIEAETKKFIEFLSAVYADLGFDKWRIKLSTRPEKR 437

Query: 202 IGGDLS----------------HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           IG + S                HE+ +    GE   +  K  ++F            +  
Sbjct: 438 IGTEESWDHAEAALANAVTAAGHEYEIF--EGEGAFYGPK--LEF------------VLT 481

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           ++I   W             ++  +LPE        ++  +I   G K+   M       
Sbjct: 482 DAIGRDW--------QCGTLQVDPNLPER-------LDANYIGPDGAKHRPVML------ 520

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
               H   +GS+     R +  +IE SH GK  +W   +AP ++ + +I +      D  
Sbjct: 521 ----HRACLGSF----ERFIGILIE-SHAGKLPLW---LAPRQVVVASITSE---ADDYV 565

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E++ A L   G     D   E+I  +     L   P    +G+K V    V ++ RL   
Sbjct: 566 EEVAATLIAAGIRAECDTRNEKINYKVREHSLGKVPYIFAIGAKEVETRTVSVR-RLGDT 624

Query: 426 R-EDMSLEEVI 435
           R E ++L+ ++
Sbjct: 625 RTETVALDAIV 635


>gi|260556061|ref|ZP_05828280.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260410116|gb|EEX03415.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 640

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 155/415 (37%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDLAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLPM---SATFKGADGKDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP+   ++     + +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +A E++ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLSPVQACVMNITDSQA---EASEQVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|256397192|ref|YP_003118756.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256363418|gb|ACU76915.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 480

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      F    G+       S+G+ + R+V   I +  D KG+
Sbjct: 222 GKALQSGTTHYLGTNFAKAFGIQFADDAGRLELCHTTSWGM-STRLVGGTIMTHGDDKGL 280

Query: 339 IWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           + P  +AP+++ ++ I   DQ      A  ++  RL   G  V  DD  +   G +F   
Sbjct: 281 VLPPKLAPYQVVIVPIARGDQAETVLAAVRELAGRLKAAGIRVHVDDRPQVSPGFKFNDW 340

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           ++ G PL++ +G + ++     +  RL
Sbjct: 341 EMRGVPLRLEIGPRDLAAGTALLAKRL 367



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E V+ ++    I SYR+LP    Q     R ELRPR   +R+ EFL ++ 
Sbjct: 104 EEPLVLRPTSETVIGEMMAKWISSYRDLPLLLNQWANVVRWELRPRL-FLRTTEFLWQEG 162

Query: 161 YS 162
           ++
Sbjct: 163 HT 164


>gi|55377088|ref|YP_134938.1| prolyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|74579418|sp|Q5V5H0|SYP_HALMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|55229813|gb|AAV45232.1| proline-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 484

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P+ K V A         Y GT +      T+  AD +++     S+G+ + R + A+I 
Sbjct: 222 MPDGKTVQA-----ATSHYLGTSFGEAFDITYADADEEENTAHTTSWGL-SWRAMGALIM 275

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQ- 387
           +  D +G++ P ++AP ++ ++ I   D      D    + A L +    V  DD   + 
Sbjct: 276 THSDDQGLVLPPALAPDQVVVVPIWQEDNKDEVIDYAADLAAELDEADVRVELDDREHRN 335

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            G ++   +L G PL+V +G   V D +  + HR  G  E
Sbjct: 336 PGFKYNEHELHGVPLRVEIGPHEVEDGEATLVHRPDGETE 375


>gi|320109353|ref|YP_004184943.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319927874|gb|ADV84949.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 676

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 150/395 (37%), Gaps = 45/395 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +R+E  R G   +  P +   +LW  SG    YG+ M    
Sbjct: 294 GLIFWHPNGAIIRKTMEDWMRDECLRRGYDLVVTPHVMRRELWQISGHEGFYGQNMYAPM 353

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +D      P +      I+++  KSYR+LP  + ++   +R E      G++R R F 
Sbjct: 354 ELDDAEYRLKPMNCPGHILIYKNSPKSYRDLPVRYAELGNVYRYERSGTMHGLLRVRGFT 413

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  TP   +            + H+ G                  +EF V   T
Sbjct: 414 QDDAHIF-CTPAQIEDEVVACVEFAEEVLHKFGF-----------------NEFKVELST 455

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +     +K ++  P   E      +  L + + +   PY    ++  E  F       +
Sbjct: 456 WDPN--DAKHYVGDPKDWELA----VNGLKTALNRKNIPY---KEIPGEAAF----YGPK 502

Query: 277 VSARGIEV-GHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVI 329
           +  + ++V G ++   T    ++LP      + G DG+ H   M    + G++     V+
Sbjct: 503 IDVKLVDVLGRLWQLSTVQFDFNLPRRFELEYTGEDGEKHQPVMVHRALFGSVERFFGVL 562

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              + G   +W   +AP +I L+ I        +  +K    L  +G  V  D   E++ 
Sbjct: 563 IEHYAGAFPLW---LAPIQIGLVPISEKHTAYAETVKK---ELEAIGLRVTLDARNEKMN 616

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           ++     L   P  +I+G K      V ++ R  G
Sbjct: 617 AKIRDLTLQKVPFVLIMGDKEAEAKAVSVRTRGKG 651


>gi|313902061|ref|ZP_07835474.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467670|gb|EFR63171.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 638

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G   W P G      +    RE Q R G  E+  P +   DLW  SG ++ Y   M  
Sbjct: 259 APGYAFWHPKGATVYGLLEQFSRELQARYGYQEVRTPEILKVDLWHRSGHWEHYRDNMF- 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L +R D      P +      ++RS I+SYR+LP    +     R E      G++R R 
Sbjct: 318 LIEREDALFGVKPMNCPGHCLLYRSRIRSYRDLPLRLAEYGRLARFERSGTLHGLLRVRG 377

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 378 FEQDDAHLF 386


>gi|315126513|ref|YP_004068516.1| threonyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315015027|gb|ADT68365.1| threonyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 636

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 144/396 (36%), Gaps = 48/396 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +RE+       E+  P +    LW +SG ++ Y + 
Sbjct: 257 QEEAPGMVFWHNDGWSIYRELEEFVREKLREYQYEEVKGPMMMDRSLWEKSGHWEKYSEA 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M        +  I  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTESEKREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   DA+ F  T E      +         +   G + I ++  + P   IG D   
Sbjct: 376 VRGFTQDDAHVF-CTEEQIMDEVSACIKMVYDTYETFGFEKIVVKLSTRPEQRIGED--- 431

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E    A+        + D     +P E   +   I                       L+
Sbjct: 432 EMWDKAELALADALKANDIEFDYLPGEGAFYGPKIEFT--------------------LY 471

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVV 325
           D L        R  + G +      ++LP  + AT+   + +     M    I G++   
Sbjct: 472 DCLD-------RAWQCGTV---QLDFALPGRLGATYVAENNERRTPVMIHRAILGSIERF 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   ++P  +AP ++ ++NI           ++I  +L+K+G     D   
Sbjct: 522 IGILTEEYAG---LFPTWLAPKQVVIMNITDKQA---PYVQEIVQKLNKLGIRAAADLRN 575

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  ++VG K V   +V ++ R
Sbjct: 576 EKIGFKIREHTLKRIPYLLVVGDKEVEQQEVAVRTR 611


>gi|169634342|ref|YP_001708078.1| threonyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|238688108|sp|B0VKJ4|SYT_ACIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169153134|emb|CAP02213.1| threonyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 640

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 155/415 (37%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDLAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLPM---SATFKGADGKDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP+   ++     + +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +A E++ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLSPVQACVMNITDSQA---EASEQVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|156042356|ref|XP_001587735.1| hypothetical protein SS1G_10975 [Sclerotinia sclerotiorum 1980]
 gi|154695362|gb|EDN95100.1| hypothetical protein SS1G_10975 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 791

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   WLP G +  + + + +REE  + G  E+  P + +++LW  SG +  Y 
Sbjct: 339 FFHELSPGSAMWLPHGARIYNTIQSFLREEYWKRGYNEVITPNMYNSELWKTSGHWAYYK 398

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            +M       D      P +      +F    +S+R LP+      +  R+E      G+
Sbjct: 399 DDMFTFPVEKD-VFALKPMNCPGHCLMFGHRERSHRELPWRVADFGVLHRNEASGALTGL 457

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 458 TRVRRFQQDDAHIF 471


>gi|62078811|ref|NP_001014062.1| threonyl-tRNA synthetase, mitochondrial precursor [Rattus
           norvegicus]
 gi|81884372|sp|Q68FW7|SYTM_RAT RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|51259375|gb|AAH79154.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Rattus
           norvegicus]
          Length = 723

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 161/427 (37%), Gaps = 58/427 (13%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E  R G  E+  PT
Sbjct: 301 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRIYNALVAFIRAEYARRGFSEVKTPT 360

Query: 74  LQSADLWVESGRYDSYGKEMLRL----------------ADRNDKAMIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y   M  L                A      +   P +      +
Sbjct: 361 LFSTKLWEQSGHWEHYRAHMFSLKPPGTDGVDSSQSGHPARCPKDTLALKPMNCPAHCLM 420

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F    +S+R LP       +  R E      G+ R   F   DA+ F         +  +
Sbjct: 421 FAHRPRSWRELPVRLADFGVLHRAEASGSLGGLTRLWRFQQDDAHIF--CAPSQLEAEIR 478

Query: 177 MFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
             + +LR ++  LG  S  +   + P G      F+     GE  ++   D  +  +   
Sbjct: 479 GCLDFLRSVYSVLGF-SFHLALSTRPPG------FL-----GEPHLW---DQAEKVLQQA 523

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             +F +  +LN       A Y    DVH   L D+L    +     ++      F  +Y 
Sbjct: 524 LEEFGEPWNLNPGD---GAFYGPKIDVH---LHDALGRPHQCGTIQLDFQLPLRFDLQYK 577

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            P       A   +  V +    +G++  +  V+  S  G+   WP  ++PF++ +I ++
Sbjct: 578 GP-------AGAPECPVLIHRAVLGSVERLLGVLAESCGGR---WPLWLSPFQVVVIPVR 627

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +   D   ++   L   G     D D G  +  +   A L  +  Q +VG +  S  
Sbjct: 628 TEQE---DYARQVQQCLQAAGLVSDLDADCGLTLSRRVRRAQLAHYNFQFVVGQREQSQM 684

Query: 415 KVEIKHR 421
            V ++ R
Sbjct: 685 SVNVRTR 691


>gi|257095791|ref|YP_003169432.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048315|gb|ACV37503.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 641

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 5/174 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G   W P G      +   +R  Q R   +E++ P +    LW  SG + +Y + M  
Sbjct: 259 APGSVFWHPKGWALFQQLIGYMRTRQERADYVEVNTPDVMDRGLWETSGHWFNYREAMFT 318

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +++     P +      +F   +KSYR+LP    +     R E      G++R R 
Sbjct: 319 TTTEDERVFALKPMNCPGAVSLFAQRLKSYRDLPLRMAEFGKVHRYEPSGSLHGLLRVRH 378

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           F   DA+ F    +      + + + +  I+   G   + ++  + P   IG D
Sbjct: 379 FTQDDAHIFCTAAQMQDECASTIALVFA-IYRDFGFDDVAVKLSTRPANRIGSD 431


>gi|169797157|ref|YP_001714950.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|184156915|ref|YP_001845254.1| threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|215484620|ref|YP_002326855.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|239500701|ref|ZP_04660011.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|301510743|ref|ZP_07235980.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|332856896|ref|ZP_08436305.1| threonine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332867201|ref|ZP_08437466.1| threonine--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|332874008|ref|ZP_08441943.1| threonine--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|226701398|sp|B7H005|SYT_ACIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238685492|sp|A3M299|SYT_ACIBT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688031|sp|B0V5P2|SYT_ACIBY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690968|sp|B2HTH0|SYT_ACIBC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169150084|emb|CAM87978.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|183208509|gb|ACC55907.1| Threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|193076379|gb|ABO11043.2| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|213985706|gb|ACJ56005.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|322506811|gb|ADX02265.1| thrS [Acinetobacter baumannii 1656-2]
 gi|323516680|gb|ADX91061.1| threonyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332726950|gb|EGJ58455.1| threonine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332734140|gb|EGJ65272.1| threonine--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|332737749|gb|EGJ68641.1| threonine--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 640

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 155/415 (37%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDLAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLPM---SATFKGADGKDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP+   ++     + +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +A E++ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLSPVQACVMNITDSQA---EASEQVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|57640485|ref|YP_182963.1| prolyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|74503571|sp|Q5JF49|SYP_PYRKO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57158809|dbj|BAD84739.1| prolyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 481

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  WLP G K + N+   I  E  RTG  E+  P L    +   E+     +  E+  
Sbjct: 33  KGMNVWLPYGLKIMRNIERFIHAEMERTGHDEVLFPALIPETEFQKEAEHIKGFEGEVYW 92

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +I  PT E  M  +F   I+S+ +LPF  YQI   +R E +    ++R
Sbjct: 93  VTHAGLEPLDVRLILRPTSETAMYSMFSLWIRSHADLPFKIYQIVNVYRYETKHTRPLIR 152

Query: 152 SREF 155
            RE 
Sbjct: 153 VREI 156



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +  +   ++   +  ++   G   YV   ++G+   R++AAVI    D +G+
Sbjct: 221 GRTLQIGTMHNYRQNFAKAYNIQYETETGDHEYVHQTTFGMSE-RLLAAVIAIHGDDRGM 279

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-----LSKVGCDVFWDDMGEQIGSQFA 393
           + P ++AP ++ ++ I   D    +A    YAR     L   G  V  D+   + G ++ 
Sbjct: 280 VLPPTIAPIQVVIVPIPKKDS---EADVFAYAREIAEELRTAGIRVHVDERDIRPGRKYY 336

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEV 434
             +L G PL++ VG + V   K  +  R T     +  D  +EEV
Sbjct: 337 DWELKGVPLRIEVGPRDVEGKKAVLARRDTLEKITVERDNIVEEV 381


>gi|317969695|ref|ZP_07971085.1| threonyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 590

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 89/427 (20%), Positives = 159/427 (37%), Gaps = 85/427 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +  + RE     G   +  P +    LW  SG  D Y + M    
Sbjct: 207 GLVFWHPRGARMRLLIENLWRELHFNAGYELLYTPHVADISLWKTSGHLDFYSESMFGPM 266

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 267 QVDEREYQLKPMNCPFHVLTYASTLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 325

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ F L PE                                     +S E + + D
Sbjct: 326 TQDDAHVFCL-PE------------------------------------QISDEILAILD 348

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E Q+  + DF ++            I+L++  E+ +    A  D+  + L ++L   +
Sbjct: 349 LTE-QILSTFDFRNYE-----------INLSTRPEK-SIGEDAVWDLATQGLIEAL--ER 393

Query: 276 RVSARGIEVGHIFYFGTK---------------------YSLP--MSATFKGADGKDHYV 312
           +  A  I+ G   ++G K                     ++LP      +  ADG     
Sbjct: 394 KGWAYKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTVQLDFNLPERFDLEYVAADGSRQRP 453

Query: 313 QMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            M    I G++     ++  ++ G    W   +AP +I L+ +   D+V   A E + A 
Sbjct: 454 IMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT--DEVTGYA-ESVAAA 507

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G     D  G+++G      + +  P+  ++G+K      + ++ R  G    + L
Sbjct: 508 LKAAGVRASVDHSGDRLGKLIRNGEQMKIPVLGVIGAKEAEGGTISLRSRREGDLGSIEL 567

Query: 432 EEVINYA 438
           E V+  A
Sbjct: 568 ETVVAAA 574


>gi|307169877|gb|EFN62386.1| Threonyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 689

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 160/414 (38%), Gaps = 56/414 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   IR E  + G  E+  P + ++ LW  SG +  Y + 
Sbjct: 303 HELSPGSCFFQPRGAYIYNTLVEFIRSEYRKRGFQEVISPNIYNSKLWQTSGHWQHYAEN 362

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D   +     P +      IF    +S+R LP       +  R+EL     G+ R
Sbjct: 363 MFSF-DVEKETFALKPMNCPGHCMIFDVRCRSWRELPLRMADFGVLHRNELSGALTGLTR 421

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  + E  K   ++M  +   + H  G+                   F 
Sbjct: 422 VRRFQQDDAHIF-CSVEQIK---DEMIAALEFLRHVYGI---------------FGFTFN 462

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVHNE 265
           +   T   +   S    D    +         SLN+  + WT      A Y    D+   
Sbjct: 463 LCLSTRPEKYLGSLKVWDRAEKALEE------SLNAFGQPWTLNPQDGAFYGPKIDI--- 513

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADG-KDHYVQMGSYGIGAM 322
            L D+L    + +   ++          + LPM  + ++   +G K   V +    +G++
Sbjct: 514 TLMDALKRAHQTATIQLD----------FQLPMRFNLSYVNENGEKTRPVIIHRAILGSV 563

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFW 381
             + A++  S+ GK   WP  ++P +  ++ + +  D+   +  +K++     V  D   
Sbjct: 564 ERMIAILTESYGGK---WPYWLSPRQAMVVPVVSQFDEYAYEVKQKLWDAGVMVEVDT-- 618

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D  + +  +   A L  F   ++VG K  +   V I+ R   +  +M++EE+I
Sbjct: 619 -DSSDTLNKKIRNAQLAQFNFILVVGEKERNAGTVNIRTRDNVVHGEMAVEELI 671


>gi|308068694|ref|YP_003870299.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Paenibacillus
           polymyxa E681]
 gi|305857973|gb|ADM69761.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Paenibacillus
           polymyxa E681]
          Length = 482

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT +++     +   +    +    S+G  + R++ A+I    D +G+
Sbjct: 225 GRAVQAGTSHYMGTNFAVAFDIKYLSRENNLEFAHTTSWGT-STRLIGALIMVHGDDRGL 283

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
             P  VAP ++ ++ I   K  D V   A ++++A L + G  V  DD  +   G +F  
Sbjct: 284 ALPPKVAPTQVIMVPIGPPKKRDAVIARA-DELFAELKQAGVRVKMDDRSDVSPGWKFNE 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEV 434
            ++ G P+++ +G + + +    +  R++G    +++D  +EEV
Sbjct: 343 YEMRGVPVRMEIGPRDMENGVCVLVSRISGEKKIVQQDNLVEEV 386


>gi|152989860|ref|YP_001355582.1| threonyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|151421721|dbj|BAF69225.1| threonyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 613

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM--LR 95
           G+  WLP G +    + +++     + G   +  P +  +DLW +SG Y +Y + M    
Sbjct: 231 GLPIWLPKGARLRSKLESLLFAAHRKRGYEPVRGPEILKSDLWKKSGHYQNYKENMYFTE 290

Query: 96  LAD---RNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + D   + +  + YG  P +      I++S  +SYR LP  F++  +  R E      G+
Sbjct: 291 ICDDETKKETCVEYGIKPMNCVGHIMIYKSKKRSYRELPLKFFEYGVVHRHEKSGVLHGL 350

Query: 150 MRSREFLMKDAYSFDLTPEGSK 171
            R REF   DA+ F   PE  K
Sbjct: 351 FRVREFTQDDAHIF-CKPEQIK 371


>gi|220934623|ref|YP_002513522.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|259516780|sp|B8GRI1|SYT_THISH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219995933|gb|ACL72535.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 643

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +     +   R G   +  P + + DLW  SG  D Y + M    
Sbjct: 262 GLVFWHPKGARIRRAIEQFWFDMHERAGYQFLYTPHIANLDLWKTSGHADFYSESMYEPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +++A    P +      +++  + SYR+LP  + ++   +R E+     G+MR R F 
Sbjct: 322 EDDNQAFQLKPMNCPFHVLVYKDRLHSYRDLPLRWAEMGTVYRREMSGALHGLMRVRGFT 381

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 382 QDDAHIF 388


>gi|296446450|ref|ZP_06888394.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296256085|gb|EFH03168.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 643

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G   W   G     ++ + +R  Q   G  E++ P +    LW  SG + +Y + 
Sbjct: 257 QEEGPGTIFWHEKGWALFQSLVSYMRRRQKAAGYKEVNTPQVLDRALWETSGHWQTYREN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      +++     P +      IF++ +KSYR+LP    +  +  R E      G+MR
Sbjct: 317 MFLTKTEDERIFALKPMNCPGHVQIFKNGLKSYRDLPVKIAEFGIVHRYEPSGALHGMMR 376

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 377 VRAFTQDDAHIF 388


>gi|163857146|ref|YP_001631444.1| threonyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|229557977|sp|A9IRH6|SYT_BORPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|163260874|emb|CAP43176.1| thrS [Bordetella petrii]
          Length = 650

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      V   +R   N  G  E+  P +    LW ++G +D+Y + M  
Sbjct: 264 APGLIFWHPKGWALWQQVEQYMRAVYNDNGYQEVKAPQILDLSLWKKTGHWDNYRENMFT 323

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               N    +YG  P +      IF + + SYR LP  + +     R+E      G+MR 
Sbjct: 324 TESEN---RVYGLKPMNCPGHVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRV 380

Query: 153 REFLMKDAYSF 163
           R F   D + F
Sbjct: 381 RGFTQDDGHIF 391


>gi|126640661|ref|YP_001083645.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 549

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 155/415 (37%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 164 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYAE 223

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 224 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 283 RVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 339

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 340 ----ALWDLAE------KSLAD--------------ALDAAGLEWELQ-PGEGAFYGPKI 374

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLPM---SATFKGADGKDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP+   ++     + +D  V +    +G+
Sbjct: 375 EFSLKDC---------LGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGS 425

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +A E++ A+L + G     
Sbjct: 426 FERFIGILIEHYAG---FMPPWLSPVQACVMNITDSQA---EASEQVVAKLKENGLRAIS 479

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 480 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 534


>gi|152993995|ref|YP_001359716.1| threonyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166225510|sp|A6QD00|SYT_SULNB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151425856|dbj|BAF73359.1| threonyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 604

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G K    +  I+ +         +  P +  AD+W  SG Y  YG+ M  L 
Sbjct: 230 GLPFWMPQGAKLRYKLEQILHKAHLVRDYEPVRGPEILKADMWRTSGHYACYGENMY-LT 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + +     P +      IF+   KSYR+LP  +Y+  +  R E      G++R REF 
Sbjct: 289 EIDGQEYGIKPMNCIGHIQIFKQTQKSYRDLPVKYYEYGVVHRHEKSGVLHGLLRVREFT 348

Query: 157 MKDAYSFDLTPE 168
             DA+ F   PE
Sbjct: 349 QDDAHIF-CAPE 359


>gi|310640050|ref|YP_003944808.1| ser-tRNA(thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
 gi|309245000|gb|ADO54567.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
          Length = 637

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G      +    R+ Q   G  E+  P + +  LW +SG Y+ Y 
Sbjct: 257 MFSEEAPGMPFYLPKGMVVRTALEDYSRDIQRLHGYEEVRTPLMMNNRLWEQSGHYEHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +  ++ ++      P +      +F++ + SYR+LP    +     R EL     G+
Sbjct: 316 KENMYFSEVDETTFALKPMNCPGHMLVFKNELHSYRDLPIRISEFGQVHRHELSGALNGM 375

Query: 150 MRSREFLMKDAYSFDLTP 167
           MR R F   DA+ F +TP
Sbjct: 376 MRVRTFCQDDAHIF-VTP 392


>gi|260940036|ref|XP_002614318.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238852212|gb|EEQ41676.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 722

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G +  + +  ++REE  + G  E+  P + +  LW  SG + +Y + M  
Sbjct: 330 SPGSAFWLPHGTRIYNTLVDMLREEYRQRGYEEVITPNMYNTKLWEISGHWGNYKENMFS 389

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                D   +  P +      +F+S  +SYR LP+      +  R+E      G+ R R 
Sbjct: 390 FEVEKDTFGL-KPMNCPGHCVLFKSRERSYRELPWRVADFGVVHRNEFSGALSGLTRVRR 448

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 449 FQQDDAHIF 457


>gi|70607289|ref|YP_256159.1| prolyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|114152265|sp|Q4J8L4|SYP_SULAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68567937|gb|AAY80866.1| bifunctional aminoacyl-tRNA synthetase [Sulfolobus acidocaldarius
           DSM 639]
          Length = 483

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++  + RV    +++G + + G  ++       +  DG   Y    SYGI   RV+A 
Sbjct: 215 FDTIMPDSRV----LQIGTVHHLGQHFTKAFDLKVQRKDGTLDYPHQTSYGISD-RVIAV 269

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV----GCDVFWD- 382
            +  + D  G I    +AP K  +I I A D+   +   +    ++K+    G +   D 
Sbjct: 270 AVSINGDDHGTILSPVLAPIKAVIIPIPAKDEKETEKIIEYSEDVAKILVSNGINTVIDK 329

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTGI 425
           D  +  G ++ + ++ G PL++ +G + +S + V IK R  L GI
Sbjct: 330 DTEKTPGEKYYIWEIKGVPLRIEIGPRELSSNSVFIKRRDTLQGI 374



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 6/163 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLR 95
           KG+  WLP G K       +IR+  +  G  E+  P L   DL    G +   +  E+  
Sbjct: 34  KGMGVWLPYGFKIRQAAVDLIRKLLDAKGHEEVLFPLLVPEDLLRREGEHIKGFESEVFW 93

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +  D  +   PT E  +T +    ++SY+ LP  +YQI   FR E +    ++R
Sbjct: 94  VTKGGEENLDIRLALRPTSETAITYMETYWVQSYKQLPKKYYQIVSVFRYETKATRPMIR 153

Query: 152 SREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            RE    K+A++   T E ++    +    Y   F  LG+  I
Sbjct: 154 LREVSTFKEAHTLHETYEDAERQVKEAIEIYKNFFEELGIPYI 196


>gi|331087229|ref|ZP_08336299.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408915|gb|EGG88376.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 479

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   + K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFGIQYTDKENKLQYVHQTSWGM-TTRMIGAIIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ +I I+       D   ++   L K G  V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPRIAPVQVMVIPIQQKKDGVLDKAYEVKEVLKKAGLSVKVDDSDKSPGWKFSEQEMR 343

Query: 399 GFPLQVIVGSK 409
           G P+++ +G K
Sbjct: 344 GIPVRIELGPK 354


>gi|295687966|ref|YP_003591659.1| threonyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295429869|gb|ADG09041.1| threonyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 658

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + +T     I +  KG+  W P G      +   +R   +  G  E+  P 
Sbjct: 243 EAEKRDHRKLGKTMDLFHIQEEGKGMVFWHPKGWALYRVLEDYMRRRLDAAGYKEVKTPQ 302

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG  + +G  M        + +   P +      IF    KSYR LP    
Sbjct: 303 ILDKSLWEKSGHAEKFGHAMFMCESAEGEVLAVKPMNCPGHIQIFNVGQKSYRELPLRMA 362

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGL 190
           +     R E      G+MR R F   DA+ F    + ++ S    F+  LR +++ LG+
Sbjct: 363 EFGACHRYEPSGAMHGIMRVRAFTQDDAHIFCREEQVTEESAR--FIELLRSVYNDLGM 419


>gi|300712094|ref|YP_003737908.1| prolyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299125777|gb|ADJ16116.1| prolyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 482

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     T+   D ++      S+G+ + R + A+I +  D +G+
Sbjct: 225 GKSVQGGTSHHLGQSFAEAFDITYVDEDEEETVAHTTSWGL-SWRAIGALIMTHSDDQGL 283

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVA 395
           + P +VAP ++ ++ I  + + +   +  E I   L + G  V  DD  E+  G +F   
Sbjct: 284 VLPPTVAPEQVVIVPIWQEENREEVLEYSEGIADDLEEAGFRVELDDRDERNPGFKFNEW 343

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +LLG PL++ +G   V D +V   HR
Sbjct: 344 ELLGTPLRLEIGPHEVEDGEVTAVHR 369


>gi|255262353|ref|ZP_05341695.1| threonyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255104688|gb|EET47362.1| threonyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 649

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 143/401 (35%), Gaps = 54/401 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G +E++ P +    LW  SG ++ Y +
Sbjct: 261 MQEEAPGQVFWHPNGWTVYTELQDYMRRKQRAGGYVEVNTPQVVDRKLWEASGHWEKYQE 320

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 321 NMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 380

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   D + F    E        +++ +L  I+  LG +   ++    P   
Sbjct: 381 LHGIMRVRGFTQDDGHIF--CREDQVQEETAVYIEFLSTIYKDLGFEKFRVKYSDRPDTR 438

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S E   + D  E  +  +                   + N+ +E    P       + 
Sbjct: 439 AGSDE---VWDKAEQALLTA-------------------TRNAGIEPEMNP--GEGAFYG 474

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
            KL   L +          +G  +  GT    + LP  + AT+ G DG  H  V +    
Sbjct: 475 PKLEFVLTD---------AIGRDWQCGTHQVDFVLPERLDATYIGTDGGKHRPVMLHRAT 525

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G+      ++   H GK   W   +AP ++ +  I +      D   +I   L   G  
Sbjct: 526 LGSFERFIGILIEEHAGKLPFW---LAPRQVVVTTIVSD---ADDFAAEIVETLRSKGVR 579

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   E+I  +     L   P+ + +G + V +  V ++
Sbjct: 580 AEADTRNEKINYKVREHSLAKVPVILAIGQREVDERTVSVR 620


>gi|257067150|ref|YP_003153406.1| threonyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256799030|gb|ACV29685.1| threonyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 640

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 161/412 (39%), Gaps = 45/412 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+   G   + P G   ++ +     +  N  G  E+  P + + DLW  SG +D Y KE
Sbjct: 257 HEEGPGFPFFHPNGMILMNELLGWWTDVLNENGYGEIKTPLILNEDLWHRSGHWDHY-KE 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +     + +A    P +       + S+  SYR+LP    +     R EL     G+ R
Sbjct: 316 NMYFTKIDGEAYAIKPMNCPGSVLTYASNQHSYRDLPIRLAEYGQVHRHELSGTLHGLFR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEF 210
            R F   DA+ + L  +  +  Y  + ++ L ++   G K +I +        GD+    
Sbjct: 376 VRTFTQDDAHVYCLPSQIKEEVYRMIDLADL-LYSTFGFKYTIELSTRPDDFMGDIKD-- 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               D  E Q+   K   +  I  E    D             A Y    D H   L D+
Sbjct: 433 ---WDFAEDQL--KKALEERGIEYEINPGD------------GAFYGPKIDFH---LLDA 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMS--ATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
                  + R  + G I      + LP +   T+   +G K   V +    +G++     
Sbjct: 473 -------AKREWQCGTI---QLDFQLPQNFDLTYIDENGEKQRPVMLHRALLGSIERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+     G+  +W   + P ++ +I +   D+   D CE +  ++ + G  V  D   E 
Sbjct: 523 VLTEHFAGRFPLW---LNPQQVEIIPVS--DKFI-DYCEDLKEKIKEAGFRVNIDYRSEG 576

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G +   A L+     ++VG K  +  K+ +++R      D+S++E I   S
Sbjct: 577 VGYKIRQAQLMRTNYMLVVGEKEETSGKLTVRNRDGEETADVSVDEFIEKIS 628


>gi|260802092|ref|XP_002595927.1| hypothetical protein BRAFLDRAFT_268618 [Branchiostoma floridae]
 gi|229281179|gb|EEN51939.1| hypothetical protein BRAFLDRAFT_268618 [Branchiostoma floridae]
          Length = 681

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 161/417 (38%), Gaps = 57/417 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   I+EE ++ G  E+  P + +  LW  SG +D Y 
Sbjct: 289 FFHELSPGSCFFLPKGAHIYNKLIDYIKEEYHKRGFQEVVSPNMYNVKLWKTSGHWDHYE 348

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      ++    +S+R LP       +  R+EL     G+
Sbjct: 349 ENMFSF-EVEKETFALKPMNCPGHCLMYDVRPRSWRELPLRMADFGVLHRNELSGTLTGL 407

Query: 150 MRSREFLMKDAYSFDLTP------EGSKHSYNKMFVSY---LRIFHRLGLKSIPMRAESG 200
            R R F   DA+ F          EG     N ++ ++   L++F    L + P +A   
Sbjct: 408 TRVRRFQQDDAHIFCTMEQLEDEIEGCLEFMNSIYTTFGFDLKLF----LSTRPEKA--- 460

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            IG   +       D  E  +  + D    P      D               A Y    
Sbjct: 461 -IGDKET------WDRAEKHLASALDKFGMPWKLNPGD--------------GAFYGPKI 499

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           D+   ++FD+L    + +   ++  +   F   Y           D K   V +    +G
Sbjct: 500 DI---QVFDALRRAHQCATIQLDFNNPERFNLTY------VSGDGDEKKRPVMIHRAILG 550

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CD 378
           ++    A++  +  GK   WP  ++P +  ++ + + DQ   +  +K+   + + G  C+
Sbjct: 551 SVERFIAILCENFGGK---WPFWLSPRQAMIVPV-SPDQ--NEYAQKVRNSIHEAGFMCE 604

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              D  G+ +  +   A L  +   ++VG K V    V ++ R   +  + S+E+VI
Sbjct: 605 ADCDP-GDTMNKKIRNAQLAQYNFIMVVGKKEVESGTVNVRTRDNKVHGERSVEDVI 660


>gi|134299469|ref|YP_001112965.1| threonyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|189083605|sp|A4J4Y7|SYT_DESRM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134052169|gb|ABO50140.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Desulfotomaculum reducens MI-1]
          Length = 635

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 153/403 (37%), Gaps = 55/403 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G   + P G    + +    R+E  + G  E+  P + +  +W +SG +  Y  
Sbjct: 255 IQEEGPGFPFFHPKGMVLRNELENFWRQEHKKRGYQEIRTPIILNRSMWEQSGHWAHYKD 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      ++++ + SYR+LP  + ++ L  R EL     G+
Sbjct: 315 NMYFTKIDEADYAV--KPMNCPGSILVYKTRMHSYRDLPLRWGELGLVHRHELSGALHGL 372

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
           MR R F   DA+ F + P   K     +   +   ++  GL     +  R E   +G D 
Sbjct: 373 MRVRCFTQDDAHIF-MLPSQIKDEIIGVIDLFDYFYNTFGLNYHVELSTRPEKS-MGSD- 429

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E   +A         +K  MD+ +   +  F                Y    D H   
Sbjct: 430 --EMWEVATNSLRDALEAKK-MDYKVNEGDGAF----------------YGPKIDFH--- 467

Query: 267 LFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM 322
           L DSL        R  + G I   F    +++L     + G DG+ H  V +     G++
Sbjct: 468 LTDSL-------GRTWQCGTIQLDFQMPERFNL----NYVGEDGQKHRPVMIHRVVFGSI 516

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFW 381
                ++     G   +W   +AP ++ ++ I   H +  R+    +  RL  +   V  
Sbjct: 517 ERFIGILTEHFAGAFPVW---LAPVQVKVLPITDRHHEYARE----LVKRLQGLDIRVEL 569

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           D   E+I  +   A     P  +++G + +    V ++ R  G
Sbjct: 570 DARNEKINYKIREAQTQKIPYMLVIGDREMEQGAVAVRERGKG 612


>gi|78048351|ref|YP_364526.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325927169|ref|ZP_08188432.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
 gi|123743902|sp|Q3BRT7|SYT_XANC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78036781|emb|CAJ24474.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325542482|gb|EGD13961.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
          Length = 634

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 77/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        D+  K    L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVANITDAQAEYVDSVRKT---LANQGFRVSADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 611


>gi|308067332|ref|YP_003868937.1| Threonyl-tRNA synthetase 2 (threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
 gi|305856611|gb|ADM68399.1| Threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
          Length = 637

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G      +    R+ Q   G  E+  P + +  LW +SG Y+ Y 
Sbjct: 257 MFSEEAPGMPFYLPKGMVVRTALEDYSRDIQRLHGYEEVRTPLMMNNRLWEQSGHYEHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +  ++ ++      P +      +F++ + SYR+LP    +     R EL     G+
Sbjct: 316 KENMYFSEVDETTFALKPMNCPGHMLVFKNELHSYRDLPIRIAEFGQVHRHELSGALNGM 375

Query: 150 MRSREFLMKDAYSFDLTP 167
           MR R F   DA+ F +TP
Sbjct: 376 MRVRTFCQDDAHIF-VTP 392


>gi|148239112|ref|YP_001224499.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166225511|sp|A5GJT7|SYT_SYNPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147847651|emb|CAK23202.1| Threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 610

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 150/393 (38%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEEFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYAESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
           + +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 EVDEREYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       K+     RI       +  +   + P   IG D   +   
Sbjct: 348 TQDDAHVFCL-PEQISDEILKILDLTERILSTFDFNTYEINLSTRPEKSIGDDAVWD--- 403

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +    K +                    I E   A Y    D+   K+ D++ 
Sbjct: 404 LATKGLIEALERKGWA-----------------YKIDEGGGAFYGPKIDL---KIEDAIG 443

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++    F    ++ L     +  ADG      M    I G++     ++  
Sbjct: 444 RMWQCSTIQLD----FNLPERFKL----DYIAADGSKQRPIMIHRAIFGSLERFFGIMTE 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G   +W   +AP ++ L+ +   D+V +   E +  +L++ G     D  G+++G  
Sbjct: 496 NYAGDYPLW---LAPEQVRLLPVT--DEV-QPYAESLLDQLTQAGVRATIDRSGDRLGKL 549

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               + +  P+  ++G+K    + V ++ R  G
Sbjct: 550 IRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDG 582


>gi|77360339|ref|YP_339914.1| threonyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875250|emb|CAI86471.1| threonyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 636

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 147/396 (37%), Gaps = 48/396 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +RE+       E+  P +    LW +SG ++ Y   
Sbjct: 257 QEEAPGMVFWHNDGWSIYRELEDFVREKLREYDYEEVKGPMMMDRSLWEKSGHWEKYADA 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M        +  I  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTVSEKREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSH 208
            R F   DA+ F  T E      +         +   G + I ++  + P   IG D   
Sbjct: 376 VRGFTQDDAHIF-CTEEQIMDEVSACIKMVYDTYETFGFEKIVVKLSTRPEQRIGEDHMW 434

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +   LA   E       +F D+ +P E   +   I                       L+
Sbjct: 435 DKAELA-LAEALKLNEIEF-DY-LPGEGAFYGPKIEFT--------------------LY 471

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVV 325
           D L        R  + G +      ++LP  + AT+   + +     M    I G++   
Sbjct: 472 DCLD-------RAWQCGTV---QLDFALPGRLGATYVAENNERRTPVMIHRAILGSIERF 521

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   ++P  +AP ++ ++NI        D  +++  +L+K+G     D   
Sbjct: 522 IGILTEEYAG---LFPTWLAPKQVVIMNITDKQA---DYVKEVVQKLNKLGIRATADLRN 575

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E+IG +     L   P  ++VG K V   +V ++ R
Sbjct: 576 EKIGFKIREHTLKRIPYLLVVGDKEVEQQEVAVRTR 611


>gi|224417829|ref|ZP_03655835.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253827169|ref|ZP_04870054.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313141370|ref|ZP_07803563.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253510575|gb|EES89234.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313130401|gb|EFR48018.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 605

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +   N+  ++ +   + G   +  P +  + +W  SG Y +YG+ M    
Sbjct: 231 GLPIWLPKGARLRRNIERLLTKALIQRGYEPVRGPEILKSAVWKTSGHYSNYGENMYFTT 290

Query: 98  DRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 + YG  P +      +++S ++SYR+LP  FY+  +  R E      G++R RE
Sbjct: 291 ---IDGVEYGIKPMNCVGHIKVYQSALRSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVRE 347

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 348 FTQDDAHIF 356


>gi|262374306|ref|ZP_06067582.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262310864|gb|EEY91952.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 640

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 82/418 (19%), Positives = 151/418 (36%), Gaps = 60/418 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                L D  E  +  + D         P E   +   I  +                  
Sbjct: 431 ----ALWDLAEKSLADALDDAGLAWDLQPGEGAFYGPKIEFS------------------ 468

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLPM---SATFKGADGKDHYVQMGSYG 318
             L D L             G ++  GT    ++LP+   ++     + +D  V +    
Sbjct: 469 --LKDCL-------------GRVWQCGTIQCDFNLPIRLDASYVTEENERDQPVMLHRAI 513

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G+      ++   + G     P  +AP +  ++NI        +A E++ A+L + G  
Sbjct: 514 LGSFERFIGILIEHYAG---FMPPWLAPVQACVMNITDSQA---EASEQVVAKLKENGLR 567

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 568 AISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|257387444|ref|YP_003177217.1| threonyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169751|gb|ACV47510.1| threonyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 640

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+  L+ ++  + +     G  E+  P +   +LW +SG YD+Y  +M  L 
Sbjct: 262 GLPLYEPNGKTVLNELSEYVADLNREAGYDEVETPHVFRTELWKKSGHYDNYVDDMF-LL 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF     SYR+LP  +++    +R E R    G+ R+  F 
Sbjct: 321 DVNDEEYGLKPMNCPGHATIFDQKSWSYRDLPIRYFEDGKVYRKEQRGELSGLSRTWSFT 380

Query: 157 MKDAYSF 163
           + D + F
Sbjct: 381 IDDGHLF 387


>gi|149030652|gb|EDL85689.1| threonyl-tRNA synthetase-like 1, isoform CRA_a [Rattus norvegicus]
          Length = 617

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 159/425 (37%), Gaps = 57/425 (13%)

Query: 18  AEIASHKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            +I + KL+    +   H+ S G   +LP G +  + + A IR E  R G  E+  PTL 
Sbjct: 197 GQIGALKLLTEQELFFFHELSPGSCFFLPRGTRIYNALVAFIRAEYARRGFSEVKTPTLF 256

Query: 76  SADLWVESGRYDSYGKEMLRL----------------ADRNDKAMIYGPTHEEVMTDIFR 119
           S  LW +SG ++ Y   M  L                A      +   P +      +F 
Sbjct: 257 STKLWEQSGHWEHYRAHMFSLKPPGTDGVDSSQSGHPARCPKDTLALKPMNCPAHCLMFA 316

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP       +  R E      G+ R   F   DA+ F         +  +  
Sbjct: 317 HRPRSWRELPVRLADFGVLHRAEASGSLGGLTRLWRFQQDDAHIF--CAPSQLEAEIRGC 374

Query: 179 VSYLR-IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +LR ++  LG  S  +   + P G      F+     GE  ++   D  +  +     
Sbjct: 375 LDFLRSVYSVLGF-SFHLALSTRPPG------FL-----GEPHLW---DQAEKVLQQALE 419

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +F +  +LN       A Y    DVH   L D+L    +     ++      F  +Y  P
Sbjct: 420 EFGEPWNLNPGD---GAFYGPKIDVH---LHDALGRPHQCGTIQLDFQLPLRFDLQYKGP 473

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                  A   +  V +    +G++  +  V+  S  G+   WP  ++PF++ +I ++  
Sbjct: 474 -------AGAPECPVLIHRAVLGSVERLLGVLAESCGGR---WPLWLSPFQVVVIPVRTE 523

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   D   ++   L   G     D D G  +  +   A L  +  Q +VG +  S   V
Sbjct: 524 QE---DYARQVQQCLQAAGLVSDLDADCGLTLSRRVRRAQLAHYNFQFVVGQREQSQMSV 580

Query: 417 EIKHR 421
            ++ R
Sbjct: 581 NVRTR 585


>gi|325663708|ref|ZP_08152112.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470201|gb|EGC73434.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 492

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   + K  YV   S+G+   R++ A+I    D  G+
Sbjct: 238 GKALQSGTSHNFGDGFAKAFGIQYTDKENKLQYVHQTSWGM-TTRMIGAIIMVHGDNSGL 296

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ +I I+       D   ++   L K G  V  DD  +  G +F+  ++ 
Sbjct: 297 VLPPRIAPVQVMVIPIQQKKDGVLDKAYEVKEVLKKAGLSVKVDDSDKSPGWKFSEQEMR 356

Query: 399 GFPLQVIVGSK 409
           G P+++ +G K
Sbjct: 357 GIPVRIELGPK 367


>gi|294636227|ref|ZP_06714641.1| threonine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291090484|gb|EFE23045.1| threonine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 622

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 152/414 (36%), Gaps = 54/414 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 236 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKAYQYQEVKGPFMMDRVLWEKTGHWENYKD 295

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 296 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 354

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 355 RVRGFTQDDAHIF-CTEEQIRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 411

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  + +    P    P E   +   I                     
Sbjct: 412 ----EIWDRAEEDLAAALEENGIPFEYQPGEGAFYGPKIEFT------------------ 449

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L D L        R  + G +      +SLP  ++A++ G + +     M    I G+
Sbjct: 450 --LHDCLD-------RAWQCGTV---QLDFSLPGRLNASYVGENNERVVPVMIHRAILGS 497

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP +  ++NI        +  E++  +L   G     
Sbjct: 498 MERFIGILTEEFAG---FFPTWLAPVQAVVMNITDSQA---EYVEELNKKLQAAGIRAKS 551

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D   E+IG +     L   P  ++ G K V   KV ++ R       MS+++VI
Sbjct: 552 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGVMSIDDVI 605


>gi|217967413|ref|YP_002352919.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336512|gb|ACK42305.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 638

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G      +    R+E  + G   +  P L  A+LW  SG +D+Y + M  L 
Sbjct: 258 GLIFYPPKGAMLRLIIEEFERKEHLKRGYFPVITPHLMQAELWKRSGHWDNYRENMFFL- 316

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFL 156
              DK     P +      I+ S ++SYR+LP  F+++   +R E     +G+ R+R F 
Sbjct: 317 QVEDKDYAVKPMNCPGHILIYNSKVRSYRDLPLRFFEMGTVYRYERSGVLYGLERARGFT 376

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 377 QDDAHIF 383


>gi|317487879|ref|ZP_07946471.1| threonyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325830610|ref|ZP_08164031.1| threonine--tRNA ligase [Eggerthella sp. HGA1]
 gi|316913005|gb|EFV34522.1| threonyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325487356|gb|EGC89798.1| threonine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 637

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 22/167 (13%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           N  +AE   H+ + R   I+        G+  +LP G + +  +   +R +    G  E+
Sbjct: 231 NLEEAEKRDHRKLGRELGIYTMDPLAGVGLPMYLPKGARVIRTMQEWLRRDLYERGYEEV 290

Query: 70  SVPTLQSADLWVESGRYDSYGKEML------------RLADRNDKAMIYGPTHEEVMTDI 117
             P + +AD+W  SG Y  Y + M             RL +   K M   P H  VM  +
Sbjct: 291 ITPHVYNADVWKTSGHYGFYKENMYFFNINEGTDEDPRLTEYAVKPM-NCPGH--VM--L 345

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           ++S + SYR+LP  +++    +R E+     G++R+R F   DA+ F
Sbjct: 346 YKSELHSYRDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVF 392


>gi|301633230|gb|ADK86784.1| proline--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 483

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 126/333 (37%), Gaps = 68/333 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E    ++++    SY+NLP  + Q    FR E   R   +R+ EF  ++ +  
Sbjct: 119 LVLRPTSEIAFCNLWKKQSFSYQNLPVIYNQWTCVFRAEKNTR-PFLRNSEFYWQETH-- 175

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                    GL S  + +ES  I     ++ I++         C
Sbjct: 176 -------------------------GLFSDGVNSESAAIAFWKLYQDIIVNQ------LC 204

Query: 224 SKDFMDFPIPSEN-TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              F+    P+E      +  ++ SI+    A   ATS  H+                  
Sbjct: 205 IPAFVGLKSPNERFAGAQNTWTVESIMPDGQALQCATS--HD------------------ 244

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                   G  ++ P   TF+    +       S GI + R++ A++ +  D  G+I P 
Sbjct: 245 -------LGQTFTKPFGLTFQNQANQQAIPYSFSCGI-STRILGALLLTHSDDFGLILPW 296

Query: 343 SVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            VAP ++ L    K  D    +  +K+   L ++     +  +  Q+G Q    ++ G P
Sbjct: 297 KVAPIQVKLYLFDKKGDTKTVELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIP 356

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            Q+IV     +   V I +RLT ++   S E++
Sbjct: 357 FQLIVD----NPQTVNIFNRLTRVKTAYSFEQL 385


>gi|237653686|ref|YP_002890000.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|237624933|gb|ACR01623.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 638

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 15/175 (8%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H+KG   W          V   +R      G  E+  P +    LW +SG +  Y
Sbjct: 261 GMVFWHAKGWTLW--------QQVEQYLRRTIGEHGYQEVKTPQIVDRSLWEKSGHWGMY 312

Query: 90  GKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
              M    +++ D A+   P +      IF   +KSYR+LP    +     R+E      
Sbjct: 313 SDLMFTTQSEKRDYAV--KPMNCPCHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP 201
           G+MR R F+  DA+ F    E    + +  F+  L +++   G   + ++  + P
Sbjct: 371 GIMRVRNFVQDDAHIF--CAESQVQAESAEFIRLLQQVYQDFGFTDVQVKLSTRP 423


>gi|146328703|ref|YP_001209437.1| threonyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|166223338|sp|A5EVK6|SYT_DICNV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146232173|gb|ABQ13151.1| threonyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 640

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  + G  E+  P +    LW +SG +D +G 
Sbjct: 256 LQEEAPGMVFWHAKGWTIYREIENYMRTKLRKYGYQEVQGPQILDRSLWEKSGHWDKFGG 315

Query: 92  EMLRLA-DRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M     D +D A+  +  P H      IF   +KSYR LP  + +  +  R+E      
Sbjct: 316 NMFTCCIDNHDFAVKPMNCPGH----VQIFNQGLKSYRELPIRYAEFGICHRNEPSGTLH 371

Query: 148 GVMRSREFLMKDAYSF 163
           G+MR R F+  D + F
Sbjct: 372 GIMRVRRFVQDDGHIF 387


>gi|118595089|ref|ZP_01552436.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
 gi|118440867|gb|EAV47494.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
          Length = 635

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H KG   WL         V   +R+     G  E+  PT+    LW +SG +++Y
Sbjct: 261 GMVFWHPKGWSLWLA--------VEDYMRQMFKDYGYKEIKTPTIIDKSLWEKSGHWENY 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
              M   A  N +     P +     ++F + + SYR+LP    +     R+E      G
Sbjct: 313 QDNMFTTASEN-RVYAVKPMNCPGHVEVFNNTLHSYRDLPLRLAEFGSCHRNEPSGALHG 371

Query: 149 VMRSREFLMKDAYSF 163
           +MR R F   DA+ F
Sbjct: 372 LMRVRGFTQDDAHIF 386


>gi|50306435|ref|XP_453191.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642325|emb|CAH00287.1| KLLA0D02772p [Kluyveromyces lactis]
          Length = 461

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 9/158 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + + + ++ ++QN+ G  E+  P +    LW +SG +++Y  +M 
Sbjct: 58  SPGSIFFLPNGTKIFNKLVSFMKLQQQNKYGFQEVVTPLIYRKTLWEQSGHWENYKDDMF 117

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           R+   +     YG  P +      +F+   +SY  LP  F       R+E      G+ R
Sbjct: 118 RVEGNDVSKEEYGLKPMNCPGHCVVFKRFDRSYNELPLRFSDFSPLHRNEASGALSGLTR 177

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMF----VSYLRIF 185
            R+F   D + F  TP+  +    K      + Y ++F
Sbjct: 178 VRKFHQDDGHIF-CTPDQVRQEIQKCLELVDMCYTKVF 214


>gi|257791654|ref|YP_003182260.1| threonyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|257475551|gb|ACV55871.1| threonyl-tRNA synthetase [Eggerthella lenta DSM 2243]
          Length = 637

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 22/167 (13%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           N  +AE   H+ + R   I+        G+  +LP G + +  +   +R +    G  E+
Sbjct: 231 NLEEAEKRDHRKLGRELGIYTMDPLAGVGLPMYLPKGARVIRTMQEWLRRDLYERGYEEV 290

Query: 70  SVPTLQSADLWVESGRYDSYGKEML------------RLADRNDKAMIYGPTHEEVMTDI 117
             P + +AD+W  SG Y  Y + M             RL +   K M   P H  VM  +
Sbjct: 291 ITPHVYNADVWKTSGHYGFYKENMYFFNINEGTDEDPRLTEYAVKPM-NCPGH--VM--L 345

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           ++S + SYR+LP  +++    +R E+     G++R+R F   DA+ F
Sbjct: 346 YKSELHSYRDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVF 392


>gi|312881548|ref|ZP_07741334.1| threonyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370825|gb|EFP98291.1| threonyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 642

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 18/207 (8%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +RE+       E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFVREKLTEYDYQEVKGPLIMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRN-DKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M   A  N D A+  +  P H      IF   +KSYR+LP    +     R+E      
Sbjct: 317 AMFTTASENRDYALKPMNCPGH----VQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALH 372

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGG 204
           G+MR R F   DA+ F  T    +             +   G  +I ++  + P   +G 
Sbjct: 373 GIMRVRGFTQDDAHIF-CTESQIQEEVTSCIKMVYDTYETFGFSNIAVKLSTRPEKRVGS 431

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFP 231
           D       + D  E  +  S + MD P
Sbjct: 432 D------EIWDESEQALKQSLEAMDIP 452


>gi|166711588|ref|ZP_02242795.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 634

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        DA  K    L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVANITDAQADYVDAVRKT---LANQGFRVSADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHMLQRVPYLLVVGDREKENGAVAVRTR 611


>gi|51892640|ref|YP_075331.1| prolyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|81826140|sp|Q67PA6|SYP_SYMTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51856329|dbj|BAD40487.1| prolyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 488

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 5/161 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F   D +  YV   S+G+ + R++ A+I    D +G+
Sbjct: 225 GKALQAGTSHYLGQNFAKGFEIKFLDRDNQLKYVHTTSWGV-STRLIGALIMVHGDDRGL 283

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             P  +AP ++ +I +   K  D+V     + ++  L   G  V  D   E  G +F   
Sbjct: 284 ALPPRLAPIQVIMIPVGPPKFRDKVM-ARFDPLFDALKAAGVRVKADLREETPGWKFNEW 342

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++ G PL++ +G + V + +  +  R TG +  + L+E + 
Sbjct: 343 EMRGVPLRIEIGPRDVDNKQCLMVRRDTGEKIPVPLDEAVE 383


>gi|110639601|ref|YP_679811.1| prolyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|122966540|sp|Q11Q45|SYP_CYTH3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110282282|gb|ABG60468.1| prolyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 491

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F   +G   YV   S+G+ + R++ A+I +  D +G++
Sbjct: 234 KALQAGTSHFLGQNFAKAFDVKFASKEGSLEYVWGTSWGV-STRLMGALIMAHSDDEGLV 292

Query: 340 WPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
            P  +AP ++ ++ I K  +Q+       + I A L      V +D   +   G +FA  
Sbjct: 293 LPPLLAPIQVVIVPIFKTAEQLDLIEATLKPILAALKAKDISVKFDHSDKYSPGFKFAEY 352

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +L G PL+V +G++ + +  VE+  R T
Sbjct: 353 ELKGVPLRVAIGARDIENGTVELARRDT 380



 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +I  PT E V+ + +++ I+S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 DEELIVRPTSETVIWNTYKTWIQSHRDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + +     +M   Y
Sbjct: 174 HTAHATKQEAIVETEQMMNVY 194


>gi|293392211|ref|ZP_06636545.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952745|gb|EFE02864.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 643

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 157/420 (37%), Gaps = 48/420 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F + P+  +            I+   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIFCM-PDQVESEVTSCIKMVYDIYSTFGFENIKVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E          D     E+           I E   A Y    +     L
Sbjct: 432 ----EMWDKAEA---------DLAKALEHNGLS-----YEIQEGEGAFYGPKLEF---AL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            DSL        R  + G I      + LP  ++A++ G D +     M    I G++  
Sbjct: 471 TDSLD-------REWQCGTI---QLDFFLPERLNASYVGEDNERKIPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G   +W   +AP +  ++NI        +  +K+  +LS  G  V  D  
Sbjct: 521 FIGIITEEYAGFFPVW---LAPTQAVVMNITDSQS---EYVQKVAKQLSDAGLRVKTDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E++G +     L   P  ++ G K +   KV ++ R        ++EE ++    +  N
Sbjct: 575 NEKVGFKIREHTLHRVPYMLVCGDKEIEAGKVAVRTRKGQDLGTFTVEEFLDILKKQVRN 634


>gi|261880448|ref|ZP_06006875.1| threonine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270332871|gb|EFA43657.1| threonine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 521

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 152/420 (36%), Gaps = 67/420 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM--- 93
           KG+  WLP G +    +  ++R+        E+  P + S +L+V SG Y  YGK+    
Sbjct: 134 KGLPIWLPKGTQLRLRLQELLRKLLKPYNYQEVIAPGIGSKNLYVTSGHYAHYGKDAFQP 193

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           +R  + +++ M+  P +     +I+    +SY++LP    +     R E      G+ R 
Sbjct: 194 IRTPEEDEEYML-KPMNCPHHCEIYARKPRSYKDLPLRIAEFGTVMRYEKSGELHGLTRV 252

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F + PE  K  +  +     ++F   G  +   +              I 
Sbjct: 253 RSFTQDDAHIF-VRPEQVKAEFENVIDIIQKVFAIFGFDNYEAQ--------------IS 297

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D  +T  +   D                       E W     A  +   EK   +  
Sbjct: 298 LRDPKDTDKYIGSD-----------------------EIWEESQNAIREACQEKGMKARE 334

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      +   D  K   V +    
Sbjct: 335 EIGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFKLEYTAEDNSKQVPVMIHRAP 394

Query: 319 IGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G++    AV+     G   +W  PD VA   IS        +   D   ++        
Sbjct: 395 FGSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKFNDYALEVKKHFDAND 446

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              + DD  E+IG +    +L   P  VIVG K  ++  V ++ +  G +  M + + I 
Sbjct: 447 VRAYIDDRNEKIGRKIRDNELKRVPYMVIVGEKEANEGLVSMRKQGGGEQASMKITDFIQ 506


>gi|149057085|gb|EDM08408.1| threonyl-tRNA synthetase-like 2, isoform CRA_a [Rattus norvegicus]
          Length = 790

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 165/416 (39%), Gaps = 59/416 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y   
Sbjct: 403 HDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTEVLSPNMYNSKLWETSGHWQHYSNN 462

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 463 MFTFDIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPVRFADFGVLHRNELSGTLTGLTR 521

Query: 152 SREFLMKDAYSFDLTPE------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R F   DA+ F +  +      G  H    ++ ++   F +L L + P           
Sbjct: 522 VRRFQQDDAHIFCMVEQIEEEIKGCLHFLQSVYSTFGFSF-QLNLSTRP----------- 569

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+     GET+++   D  +  + +  T F     +N       A Y    D+   
Sbjct: 570 --EHFL-----GETEIW---DEAERQLQNSLTGFGKPWKINPGD---GAFYGPKIDI--- 613

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           K+ D++    + +   ++    F    +++L   +  K  D K+  V +    +G++  +
Sbjct: 614 KIKDAIGRYHQCATIQLD----FQLPIRFNLTYVS--KDGDDKNRPVIIHRAILGSVERM 667

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG------CDV 379
            A++  ++ GK   WP  ++P ++ +I +         ACE    ++SK         DV
Sbjct: 668 IAILSENYGGK---WPLWLSPRQVMIIPVGP-------ACENYALQVSKECFEEGFMADV 717

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DD    +  +   A L  +   ++VG K   ++ V ++ R   I  ++S+  VI
Sbjct: 718 DLDDSC-TLNKKIRNAQLAQYNFILVVGEKEKLNNSVNVRTRDNKIHGEISITSVI 772


>gi|87122885|ref|ZP_01078753.1| threonyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86161836|gb|EAQ63133.1| threonyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 572

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 11/197 (5%)

Query: 17  DAEIASH-KLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  +  + HQ  +  G+  W   G      +   IR++Q   G  E+  P 
Sbjct: 238 EAEKRDHRKLGKKLDLFHQQEEAPGMVFWHHKGWSLYQTIEQYIRQKQRENGYQEIKTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG +  +   M      N    I  P +      ++   +KSYR+LP    
Sbjct: 298 IVDRVLWEKSGHWGKFSSGMFTTHAENRDYAI-KPMNCPCHVQVYNQGLKSYRDLPLRLA 356

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLK 191
           +     R+E      G+MR R F+  D + F +  E         F+  L  I+   G  
Sbjct: 357 EFGSCHRNEPSGSLHGIMRVRNFVQDDGHIFVM--EDQIQEEVSAFIKLLHEIYDDFGFT 414

Query: 192 SIPMRAESGP---IGGD 205
            I  R  + P   +G D
Sbjct: 415 DIIYRLSTRPEQRVGSD 431


>gi|256826891|ref|YP_003150850.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Cryptobacterium
           curtum DSM 15641]
 gi|256583034|gb|ACU94168.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Cryptobacterium
           curtum DSM 15641]
          Length = 586

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 151/398 (37%), Gaps = 48/398 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+     G   WLP G +  + +     E Q   G  ++  P + S  LW  SG +D Y 
Sbjct: 206 MMADEGPGFPFWLPNGMRLKNALTQYWMEMQEAYGYEQVDTPIILSRKLWETSGHWDHY- 264

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +      I++S  +SYR+LP    +     R EL+    G+
Sbjct: 265 KENMYTTVIDDEDYAVKPMNCPGACLIYKSKPRSYRDLPLKLAEAGKDHRHELKGALHGL 324

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLS 207
            R R F   DA+ F + P+                + + G    P R E  + P     S
Sbjct: 325 FRVRAFTQDDAHLF-IRPDQITEQVTDTAHLITAYYEQFGF---PYRVELSTRPDDSMGS 380

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   LA+ G  Q           + +   D+    +LN   E   A Y    D H   L
Sbjct: 381 DEDWALAEEGLRQA----------LEAMGVDY----TLN---EGDGAFYGPKIDFH---L 420

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMS--ATFKGADG-KDHYVQMGSYGIGAMRV 324
            D L        R  + G I      + LP +    +  +DG K   + +   G G+   
Sbjct: 421 QDCL-------GRTWQCGTI---QLDFQLPQNFELEYTDSDGSKKRPILIHRAGFGSFER 470

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   W   ++P ++ ++ +    +  R+   +I  +L + G  V  D+ 
Sbjct: 471 FIGMLTEQYAGKFPTW---LSPLQVKVLPVS---EKHREYSRQIADKLRQAGVRVKVDER 524

Query: 385 GEQIGSQFAVADLLG-FPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +   A  +   P  +I+G        + ++ R
Sbjct: 525 DEKIGYKIREARSVDRVPYMLILGEVEEEAGNISVRDR 562


>gi|304410724|ref|ZP_07392342.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS183]
 gi|307304819|ref|ZP_07584569.1| tRNA synthetase class II (G H P and S) [Shewanella baltica BA175]
 gi|304351208|gb|EFM15608.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS183]
 gi|306912221|gb|EFN42645.1| tRNA synthetase class II (G H P and S) [Shewanella baltica BA175]
          Length = 403

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            + G+  W P G     ++   +R    R G  E++ P     +LW  SG  D + + M 
Sbjct: 19  QAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFMKKELWQTSGHMDMFAENMF 78

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               + N    +  P        +F+  + S+R+LP   ++  L  R+E      G +R+
Sbjct: 79  FGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFGLVHRNESSGSLNGCLRA 138

Query: 153 REFLMKDAYSF 163
           R+F   DA+ F
Sbjct: 139 RQFTQDDAHVF 149


>gi|258544548|ref|ZP_05704782.1| threonine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258520179|gb|EEV89038.1| threonine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 639

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  + G  E+  P +    LW +SG +D +G 
Sbjct: 256 LQEEAPGMVFWHAKGWVIYREIENYMRGKLRKYGYEEVQGPQILDRSLWEKSGHWDKFGG 315

Query: 92  EMLRLA-DRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            M     D +D A+  +  P H      IF   ++SYR LP  + +  +  R+E      
Sbjct: 316 NMFTCCIDEHDYAIKPMNCPGH----IQIFNQGLRSYRELPVRYAEFGICHRNEPSGTLH 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGG 204
           G+MR R F+  D + F  T    +    ++      ++H  G   + +   + P   +G 
Sbjct: 372 GLMRVRRFVQDDGHIF-CTRSQIREEIERVCQMVYEVYHDFGFDEVELALSTRPEKRVGS 430

Query: 205 D 205
           D
Sbjct: 431 D 431


>gi|163735041|ref|ZP_02142478.1| threonyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161391823|gb|EDQ16155.1| threonyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 648

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 150/408 (36%), Gaps = 68/408 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G  E++ P +    LW  SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPNGWSIYTTLQDYMRRKQRAAGYQEVNTPQVVDRKLWEASGHWDKYQE 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 HMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    +    F++YL  ++  LG +   +   + P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CREDQIEAECAAFITYLSSVYQDLGFEKFEIMFATRPEKR 437

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +G + S + +  A                              L + ++    PY  T D
Sbjct: 438 VGSEESWDHVEAA------------------------------LENAIKATGHPY--TLD 465

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQM----- 314
                 +    + K   A G E      F    +LP  + ATF G DG  H   M     
Sbjct: 466 AGEGAFYGPKLDFKLTDAIGRE-WQCGTFQVDPNLPERLDATFIGEDGAKHRPYMLHRAC 524

Query: 315 -GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYAR 371
            GS+     R +  +IE+S  GK   W   +AP ++ + +I   A+D V      ++  +
Sbjct: 525 LGSF----ERFIGILIENSA-GKLPFW---LAPRQVVVASIITDANDYVM-----QVVDQ 571

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           L   G     D   E+I  +     +   P+ + VG++ V +  V ++
Sbjct: 572 LKAAGVRAEADLRNEKINYKVREHSVGKVPVILAVGAREVEEQTVTLR 619


>gi|156742029|ref|YP_001432158.1| prolyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|259511618|sp|A7NKX0|SYP_ROSCS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156233357|gb|ABU58140.1| prolyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 480

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 171/438 (39%), Gaps = 85/438 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L I+Q+    A++A +  +++ G I     G   W  + +   D + A        
Sbjct: 14  SQWYLDIVQQ----ADLADYAEVVK-GCIVFKPTGYALWEAIQRGLDDRIKA-------- 60

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRL--ADRNDKAMIY--GPTHEEVMTDIF 118
           TG +    P L   + L  E+   + +  E+  +  A   D A  Y   PT E ++   +
Sbjct: 61  TGHVNAYFPLLIPKSFLMKEAEHVEGFAPEVAEVTRAGGEDLAEPYVIRPTSETIIGYFY 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++       
Sbjct: 121 SKWVRSYRDLPLLINQWANVMRWEMRTR-PFLRTTEFLWQEGHTVHATEEDAERET---- 175

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I H                         V AD      F  KD M  P+      
Sbjct: 176 ---LLILHE------------------------VYAD------FVEKD-MAIPV------ 195

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              I  L S  E++  P A  S      + D          R ++ G     G  ++   
Sbjct: 196 ---IRGLKSEKEKF--PGALRSYCIEAMMQD---------GRALQAGTSHNLGQNFARAF 241

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             T+        Y    S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I  +D
Sbjct: 242 DITYTDQHNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLVIPPRLAPTQVVVVPIYRND 300

Query: 359 ---QVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSD 413
               V  +A +++ A     G   F  D  + +  G +F   +L G P++V +G K +  
Sbjct: 301 AERSVVMEAVQRMTAEWK--GLLRFKVDDRDNLTPGFKFNEWELKGVPIRVEIGPKDIEK 358

Query: 414 SKVEIKHRLTGIREDMSL 431
             V I  R    RE  S 
Sbjct: 359 GSVAIARRDQPGREGKSF 376


>gi|291460611|ref|ZP_06600001.1| proline--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416802|gb|EFE90521.1| proline--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 478

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 1/146 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      F   D +   V   S+G    R++ A+I    D  G+
Sbjct: 224 GQALQCGTSHNFGDGFAKAFGVQFLDKDNQRKTVHQTSWGF-TTRMIGALIMVHGDDSGL 282

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +AP +I ++ ++   +   D    +  RL K G  V  DD     G +FA  ++ 
Sbjct: 283 KIPPRIAPTQIMIVPVQQQKEGVLDKAFSLRERLIKAGFRVKVDDSDRSPGYKFADCEMR 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G PL++ +G + +   +  +  R TG
Sbjct: 343 GIPLRLEIGPRDIEAGQAVLVRRDTG 368


>gi|149184542|ref|ZP_01862860.1| prolyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831862|gb|EDL50295.1| prolyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 513

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 64/276 (23%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ D     I+S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 118 EEPLVVRPTSETIIGDAMARWIQSWRDLPLKLNQWANVVRWEMRTRM-FLRTSEFLWQEG 176

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++       +K    +M   Y                                      +
Sbjct: 177 HTAHADEVEAKEHTLRMLEVY--------------------------------------R 198

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F  +D     +P E  + +        VE W+                   E      +
Sbjct: 199 AFADEDLALAVVPGEKPENE---RFPGAVETWSI------------------EAMMQDGK 237

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   Y GT ++      ++  +G + +    S+G+ + R+V  VI +  D  G+  
Sbjct: 238 ALQAGTSHYLGTNFAKASGIKYQNKEGGETFAHTTSWGV-STRMVGGVIMTHGDDDGLRL 296

Query: 341 PDSVAPFKISLINI---KAHDQVCRDACEKIYARLS 373
           P  +AP ++ ++ +   K  D    + CE + A L+
Sbjct: 297 PPKIAPQQVVILPMLRDKPEDDALIEYCEALRATLA 332


>gi|304391869|ref|ZP_07373811.1| threonyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303296098|gb|EFL90456.1| threonyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 663

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 9/204 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L +L+E    A+   H+ + R   + H  +   G+  W   G K   ++ + +R
Sbjct: 231 KQLKQYLHMLEE----AQKRDHRKLGREMDLFHFQEEGPGVVFWHAKGWKVFQHLVSYMR 286

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G  E++ P +    LW  SG +  Y + M      +++     P +      IF
Sbjct: 287 RRIEEHGYDEVNAPQILDKALWETSGHWGWYRENMFTTVTEDERQFAIKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ ++SYR LP    +     R E      G+MR R F   DA+ F  TPE  +    ++
Sbjct: 347 KNGLRSYRELPVKMAEFGNVHRYEPSGALHGLMRVRGFTQDDAHVF-CTPEQLEEECLRI 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP 201
               L  +   G   I ++  + P
Sbjct: 406 NDLILSTYSDFGFGDIVVKLSTRP 429


>gi|256076493|ref|XP_002574546.1| glutamyl-tRNA synthetase cytoplasmic (glutamate--tRNA ligase) (glurs)
            [Schistosoma mansoni]
 gi|238659754|emb|CAZ30779.1| glutamyl-tRNA synthetase, cytoplasmic (glutamate--tRNA ligase)
            (glurs), putative [Schistosoma mansoni]
          Length = 1306

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 18/173 (10%)

Query: 278  SARGIEVGHIFYFGTKYSLPMSATFK-GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R I+     + G  +S     T+     GK  YV   S+G+   R +  +I    D K
Sbjct: 1015 NGRAIQGATSHHLGQNFSRMFDVTYDHPVTGKPAYVYQNSWGL-TTRTLGVLIMVHSDDK 1073

Query: 337  GIIWPDSVAPFKISLI--NIKAHDQVCR-----DACEKIYARLSK------VGCDVFWDD 383
            G++ P  VAP++I ++   I A   V        A   ++  L+K      V CD   D 
Sbjct: 1074 GLVLPPRVAPYQIVIVPCGITAKTTVQERETLLSAAHSVFELLNKSNKQFRVHCD---DR 1130

Query: 384  MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                 G +F   +L G P+++ +G + V+D KV +  R TG R ++ ++ +IN
Sbjct: 1131 DNVSPGWKFNHWELKGVPIRLEIGPQEVADRKVCLVLRHTGERVNVPMDSLIN 1183


>gi|189200603|ref|XP_001936638.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983737|gb|EDU49225.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 768

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 6/179 (3%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP GQ   + + A +REE    G  E+  P + ++ LW  SG +  Y 
Sbjct: 337 FFHEFSPGSCFFLPHGQIIYNTLQAFLREEYWNRGYQEVGSPNMYNSALWKISGHWQHYA 396

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            +M       +K  +  P +      IF+   +SYR LP       +  R+E      G+
Sbjct: 397 DDMFTFDVEKEKWAL-KPMNCPGHCLIFKHRERSYRELPIRMADFGILHRNEASGALTGL 455

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDL 206
            R R F   D + F  T +      + +F     ++ + G  +  M+  + P G  GD+
Sbjct: 456 TRVRRFQQDDTHVF-CTQDQITEEISALFDFLRAVYGKFGF-TFKMKLSTRPEGFLGDI 512


>gi|167623946|ref|YP_001674240.1| threonyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083622|sp|B0TT20|SYT_SHEHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167353968|gb|ABZ76581.1| threonyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 642

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/419 (20%), Positives = 150/419 (35%), Gaps = 48/419 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++  +    E+  P +    LW  SG +D Y  
Sbjct: 256 MQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTYQEVKGPLMMDRVLWERSGHWDKYSD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   +         +   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVQQEVSACIRMVYDTYATFGFSNIVVKLSTRPEKRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+    +   + D     +P E   +   I                       L
Sbjct: 432 -DMWDRAEEALKKALKANDIEFEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPGRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   W   ++P ++ ++NI        D  + +     + G     D  
Sbjct: 521 FLGILIEEYAGKFPAW---LSPVQVVVMNITDKQS---DYVDNVVNLFKEHGIRATKDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E+IG +     L   P  ++VG + + +++V ++ R       M LEE      ++ S
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMENNEVAVRTREGVDLGKMQLEEFATKLKNQIS 633


>gi|260774298|ref|ZP_05883213.1| threonyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260611259|gb|EEX36463.1| threonyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 642

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 145/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   IR +       E+  P +    LW  SG +D Y  
Sbjct: 257 MQQEAPGMVFWHHNGWSIFRDLEVFIRHKLTEYDYQEVKGPLMMDRVLWERSGHWDKYAD 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +             ++  G ++I ++  + P   +G D  
Sbjct: 376 RVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTYNTFGFENIAVKLSTRPEKRVGSD-- 432

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E  +  S D M                   I E   A Y    +     L
Sbjct: 433 ----EIWDKSEEALKHSLDAMGIAY--------------EIQEGEGAFYGPKIEF---TL 471

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
           +D L        R  + G +      ++LP  + AT+ G   +     M    I G++  
Sbjct: 472 YDCLD-------RAWQCGTV---QLDFNLPSRLGATYVGESNERLVPVMIHRAILGSLER 521

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + G    +P  +AP +  ++NI        D  +++  +L K G     D  
Sbjct: 522 FIGILIEEYAG---FFPTWLAPEQAVVVNITDKQA---DYAQEVVQKLQKCGIRAKADLR 575

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G + +   ++ ++ R
Sbjct: 576 NEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTR 612


>gi|260551943|ref|ZP_05825805.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260405346|gb|EEW98841.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 640

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 155/415 (37%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYAE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGKEVADFIQLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDLAE------KSLAD--------------ALDAAGLKWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLPM---SATFKGADGKDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP+   ++     + +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +A E++ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLSPVQACVMNITDAQA---EASEQVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|26554256|ref|NP_758190.1| prolyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|81846191|sp|Q8EUW7|SYP_MYCPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|26454265|dbj|BAC44594.1| prolyl aminoacyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 470

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 73/147 (49%), Gaps = 8/147 (5%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y GT ++      ++  +     +   S G+ + R++ A+I S  D  G++ P  +AP +
Sbjct: 228 YLGTNFAKSYDLKYQTKNNNYDLMFQTSAGL-STRIIGAIIMSHSDNNGLVLPFKIAPIQ 286

Query: 349 ISLINIKAHDQVCRDACE--KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++     ++V +D+ E   IY  L       ++  + + +G Q    ++ G P Q+I+
Sbjct: 287 FAIV---TSNEVNKDSDELKAIYKNLFGYKYQTYF--VEKSLGLQLQENEIKGIPFQLIL 341

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G K + ++ + I  R T  ++++S +E
Sbjct: 342 GKKEIENNTITIYRRDTREKQNISFKE 368



 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 23/155 (14%)

Query: 57  IREEQNRT----GAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYG 107
           I+EE N+        E+  P L   ++   E    + +  E+ +++   +K +    +  
Sbjct: 47  IQEEFNKILVSLNTAEVCFPMLIPYSEFMKEKEHVEGFNPELFKVSHLGEKKLEDELVIR 106

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM---------- 157
           PT E    + F+ +IKSY +LP    Q    FR E   R   +R+ EFL           
Sbjct: 107 PTSEISFCNYFKKNIKSYNDLPCILNQWGSVFRVEKNTR-PFLRTSEFLWQEQHAVFADK 165

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           K+A+ F +T     + Y K    YL I   +G K+
Sbjct: 166 KEAFDFSIT---MVNEYKKFVNDYLSIAVLMGEKT 197


>gi|114332291|ref|YP_748513.1| threonyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122313048|sp|Q0ADN4|SYT_NITEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114309305|gb|ABI60548.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Nitrosomonas
           eutropha C91]
          Length = 635

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+   + G +E+  P +    LW +SG ++++ +
Sbjct: 255 MQEEAPGMVYWHPKGWAIWQQIEQYMRQVLAKNGYVEIRTPQVLDISLWEKSGHWENFRE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  + +   +     P +      +F   ++SYR+LP    +     R+E      G+M
Sbjct: 315 NMF-ITESESRHYAIKPMNCPGHVQVFNHGLRSYRDLPLRLAEFGSCHRNEASGALHGLM 373

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 374 RVRSFTQDDAHIF 386


>gi|190575251|ref|YP_001973096.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|229558456|sp|B2FN79|SYT_STRMK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190013173|emb|CAQ46806.1| putative threonyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 633

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 145/409 (35%), Gaps = 42/409 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWALWQVVEQYMRKVYRNSGYGEVRCPQILDVSLWKKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 NMF-FTESEKRTYAVKPMNCPGHIQVFNQGLHSYRDLPIRYGEFGSCHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F  T    +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVF-CTENQIESEVTAFHQQALAVYQHFGFDEIQIKIALRPESRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A        C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAEGA-LRSALTACGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFLG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G+   +P  +AP ++ + NI        D    +   L++ G  V  D   E+
Sbjct: 524 ILIEHHAGQ---FPAWLAPTQVVVANIT---DAQADYVSGVTKTLAEQGFRVSSDLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IG +     L   P  +++G +   +  V ++ R       MSL+  I 
Sbjct: 578 IGYKIREHTLQRVPYLLVIGDREKENGAVAVRTRSGEDLGSMSLQAFIE 626


>gi|39942942|ref|XP_361008.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|58257459|gb|AAW69351.1| threonyl-tRNA synthetase-like protein [Magnaporthe grisea]
 gi|145009886|gb|EDJ94542.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 812

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H +S G   WLP G +  + + + IRE        E+  P + +ADLW +SG +  Y  +
Sbjct: 346 HDYSPGSAMWLPHGTRIYNTLLSYIREIYWEKNYEEVITPNIYNADLWKQSGHWQFYKDD 405

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  + D  D   +  P +      +F    +S+R LP+      +  R+E      G+ R
Sbjct: 406 MFVIKDEKDTFGL-KPMNCPGHALMFAHRERSHRELPWRVADFGVLHRNEASGALSGLTR 464

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 465 VRRFQQDDAHIF 476


>gi|126172877|ref|YP_001049026.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS155]
 gi|125996082|gb|ABN60157.1| tRNA synthetase, class II (G, H, P and S) [Shewanella baltica
           OS155]
          Length = 403

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            + G+  W P G     ++   +R    R G  E++ P     +LW  SG  D + + M 
Sbjct: 19  QAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFMKKELWQTSGHMDMFAENMF 78

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               + N    +  P        +F+  + S+R+LP   ++  L  R+E      G +R+
Sbjct: 79  FGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFGLVHRNESSGSLNGCLRA 138

Query: 153 REFLMKDAYSF 163
           R+F   DA+ F
Sbjct: 139 RQFTQDDAHVF 149


>gi|315639344|ref|ZP_07894506.1| threonine--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315480670|gb|EFU71312.1| threonine--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 602

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 184/443 (41%), Gaps = 43/443 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD     ++L L T    Q   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLHIIEEAKKRDHRKLGNELKLFT-FDEQIGGGLPIWLSNGARLRSKLEQMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  A+ W  SG Y +Y KE +   + +++     P +      I+++ ++
Sbjct: 254 RGYEPVRGPELLKAEAWKISGHYANY-KENMYFTNIDEQEYGIKPMNCVGHIKIYQNEVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV S
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILDFVAS 372

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            ++IF       I  R E   IG +   E    A          K+ +D     +   + 
Sbjct: 373 LMKIFDFEYEMEISTRPEKA-IGDEAIWEVATKA---------LKEALD----EQGLKY- 417

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I E   A Y    D+   K+ D+L   ++     I+V   F    ++ L  ++
Sbjct: 418 ------GIDEGGGAFYGPKIDI---KITDAL--KRKWQCGTIQVD--FNLPERFELEYTS 464

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    + K+  V +    +G+      ++     G+   +P  +AP ++ ++ I    +V
Sbjct: 465 S---ENAKERPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPTQVGIVPI---SEV 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                + I   L ++G D    D  E +  +   A+    P+ +++G + +S+  V ++ 
Sbjct: 516 HLAYAKGIQRTLLEMGVDSEIYDKNESLSKKIRNAEKQKLPMILVIGDEELSNRAVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R    ++ +SL+E +N    + +
Sbjct: 576 RRAKEQKSLSLDEFMNLIKEKIN 598


>gi|256076491|ref|XP_002574545.1| glutamyl-tRNA synthetase cytoplasmic (glutamate--tRNA ligase) (glurs)
            [Schistosoma mansoni]
 gi|238659753|emb|CAZ30778.1| glutamyl-tRNA synthetase, cytoplasmic (glutamate--tRNA ligase)
            (glurs), putative [Schistosoma mansoni]
          Length = 1346

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 18/173 (10%)

Query: 278  SARGIEVGHIFYFGTKYSLPMSATFK-GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R I+     + G  +S     T+     GK  YV   S+G+   R +  +I    D K
Sbjct: 1055 NGRAIQGATSHHLGQNFSRMFDVTYDHPVTGKPAYVYQNSWGL-TTRTLGVLIMVHSDDK 1113

Query: 337  GIIWPDSVAPFKISLI--NIKAHDQVCR-----DACEKIYARLSK------VGCDVFWDD 383
            G++ P  VAP++I ++   I A   V        A   ++  L+K      V CD   D 
Sbjct: 1114 GLVLPPRVAPYQIVIVPCGITAKTTVQERETLLSAAHSVFELLNKSNKQFRVHCD---DR 1170

Query: 384  MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                 G +F   +L G P+++ +G + V+D KV +  R TG R ++ ++ +IN
Sbjct: 1171 DNVSPGWKFNHWELKGVPIRLEIGPQEVADRKVCLVLRHTGERVNVPMDSLIN 1223


>gi|253700848|ref|YP_003022037.1| threonyl-tRNA synthetase [Geobacter sp. M21]
 gi|259516486|sp|C6DYJ5|SYT_GEOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|251775698|gb|ACT18279.1| threonyl-tRNA synthetase [Geobacter sp. M21]
          Length = 636

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 157/404 (38%), Gaps = 43/404 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  + G   +  P +   +LW  SG Y++Y +E +   
Sbjct: 263 GLVIWHPKGAMLRTILEDFERKEHLKRGYDIVLGPQILKTELWQRSGHYENY-RENMYFT 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++++    P +      I+RS ++SYR+LP  ++++    R E      G++R R F 
Sbjct: 322 TVDEQSYGVKPMNCLAHMMIYRSQLRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             DA+    TP+        +  FV+                     + G    EF +  
Sbjct: 382 QDDAHIL-CTPDQLDAEIKGVIQFVT--------------------EVMGIFGFEFEMEL 420

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            T   +   S D  +    +      D      I E   A Y    D+   KL D+L  +
Sbjct: 421 STRPEKSIGSDDAWELATSALLNALKDSGRPYEINEGDGAFYGPKIDI---KLRDAL--D 475

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSH 333
           +R     I+    F    ++ L    T+  ADG K   V +    +GA+     V+    
Sbjct: 476 RRWQCATIQCD--FTLPERFDL----TYVDADGEKKRPVMVHRVILGAIERFIGVLIEHF 529

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    +P  +AP + +++ +   +Q+     +  + +L   G  V  D   E++G +  
Sbjct: 530 AGN---FPTWLAPVQATIVTV-TDNQI--PYAQAAFDKLRAAGIRVQKDFRNEKLGFKIR 583

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            A L   P  ++VG K V    +  + R     E M+ E+ I +
Sbjct: 584 EAQLQKIPYMLVVGDKEVESGMLAPRFRDGKNLESMTPEQFITF 627


>gi|296489553|gb|DAA31666.1| threonyl-tRNA synthetase, mitochondrial [Bos taurus]
          Length = 718

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 157/415 (37%), Gaps = 65/415 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A I+ E  R G  E+  PTL SA LW  SG ++ Y 
Sbjct: 313 FFHELSPGSCFFLPRGTRVYNALVAFIKAEYTRRGFSEVKTPTLFSAKLWELSGHWEHYR 372

Query: 91  KEMLRLA----DR------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           ++M  L     DR            +   +   P +      +F    +S+R LP     
Sbjct: 373 EDMFALQPPGLDRPSSSQSDHSASPHTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLAD 432

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                R E      G+ R R F   DA+ F   P+  +            ++  LG  S 
Sbjct: 433 FGALHRAEASGSLGGLTRLRCFQQDDAHIF-CAPDQLEAEIRGCLDFLHSVYTILGF-SF 490

Query: 194 PMRAESGPIGGDLSHEFI---VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            M   + P G      F+    L D  E QV   +   +F  P + +  D          
Sbjct: 491 HMALSTRPSG------FLGEPCLWDQAE-QVL-QQALEEFGAPWDISPGDG--------- 533

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGK 308
              A Y    DVH   + D+L        R  + G I      + LP+     +KG  G 
Sbjct: 534 ---AFYGPKIDVH---VRDAL-------GRPHQCGTI---QLDFQLPLRFDLQYKGQLGA 577

Query: 309 -DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACE 366
            +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I +    ++  R+A +
Sbjct: 578 LERPVLIHRAVLGSVERMLGVLAESCGGK---WPLWLSPFQVVVIPVGTEQEEYAREAQQ 634

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + A       D    D G  +  +   A L  +  Q +VG +  S   V I+ R
Sbjct: 635 SLRAAGLVGDLDA---DSGLTLSRRIRRAQLAHYNFQFVVGQREQSKRTVNIRTR 686


>gi|269139162|ref|YP_003295863.1| threonyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267984823|gb|ACY84652.1| threonyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304559086|gb|ADM41750.1| Threonyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 642

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 151/414 (36%), Gaps = 54/414 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                + D  E  +  +      P    P E   +   I                     
Sbjct: 432 ----EIWDRAEEDLAAALQENGIPFEYQPGEGAFYGPKIEFT------------------ 469

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GA 321
             L D L        R  + G +      +SLP  +SA++ G + +     M    I G+
Sbjct: 470 --LHDCLD-------RAWQCGTV---QLDFSLPGRLSASYVGENNERVVPVMIHRAILGS 517

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           M     ++     G    +P  +AP +  ++NI        +  E++  +L   G     
Sbjct: 518 MERFIGILTEEFAG---FFPTWLAPVQAVVMNITDSQA---EYVEELSKKLQAAGIRAKS 571

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D   E+IG +     L   P  ++ G K V   KV ++ R       +S+++VI
Sbjct: 572 DLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGVISIDDVI 625


>gi|194206357|ref|XP_001491149.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 [Equus
           caballus]
          Length = 754

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/424 (20%), Positives = 163/424 (38%), Gaps = 63/424 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y +
Sbjct: 366 FHDLSPGSCFFLPRGAFIYNTLMDFIREEYHQRNFTEVLSPNMYNSKLWEASGHWQHYSE 425

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    D         P +      +F    +S+R +P  F    +  R+EL     G+ 
Sbjct: 426 NMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLT 484

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAES--GPIGGD 205
           R R F   DA+ F  T E  +            ++   G     ++  R E+  G IG  
Sbjct: 485 RVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYSTFGFSFQLNLSTRPENFLGEIG-- 541

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  L D  E Q+      M+F  P +    D             A Y    D+   
Sbjct: 542 -------LWDEAEKQL--QNSLMEFGKPWKMNPGDG------------AFYGPKIDI--- 577

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           K+ D++    + +   ++    F    +++L   +  K  D K + V +    +G++  +
Sbjct: 578 KIKDAIGRYHQCATIQLD----FQLPIRFNLTYVS--KDGDDKKNPVIIHRAILGSVERM 631

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD--- 382
            A++  ++ GK   WP  ++P ++ +I +          CEK   ++S    + F++   
Sbjct: 632 IAILSENYGGK---WPFWLSPRQVMVIPVGP-------TCEKYALQVS----NEFFEEGF 677

Query: 383 ------DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                 D    +  +   A L  +   ++VG K  +++ V ++ R   I  ++S+   I+
Sbjct: 678 MADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNVRTRDNKIHGEISVTSAID 737

Query: 437 YASH 440
              H
Sbjct: 738 KLKH 741


>gi|206896471|ref|YP_002247167.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206739088|gb|ACI18166.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 632

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/422 (19%), Positives = 158/422 (37%), Gaps = 58/422 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+     G   +  P +    LW  SG    Y + M    
Sbjct: 252 GLILWHPNGAVIRKEIEDFWRQSHIDNGYQLVYTPHVARTKLWEISGHLSFYKENMFPSM 311

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  +++ +  P +      I+++  +SY+ LP  F ++   +R E      G++R R F 
Sbjct: 312 ELENQSYLVKPMNCPFHVQIYKTKTRSYKELPIRFAELGTVYRFERSGVLHGLLRVRGFT 371

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGGDLSHE 209
             DA+ F    +  +     + ++ L I+   G + + +       + +   +G D   E
Sbjct: 372 QDDAHIFCAREQVEEEVEKVLDMA-LGIYRLFGFEDLRIELSVRDPKNKDKYVGDDDVWE 430

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF----DDIISLNSIVEQWTAPYAATSDVHNE 265
              LA++  +    ++D +DF +      F     DI   +++   W  P          
Sbjct: 431 ---LAESALSGALKARD-LDFTVAEGEAKFYGPAIDIKVKDALGRYWQGPTIQVD----- 481

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRV 324
               +LP                 F  KY+        G DG +H  V +    +G++  
Sbjct: 482 ---FNLPRR---------------FNMKYT--------GQDGLEHEPVMIHRALLGSLER 515

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDD 383
             A++   + G   +W   VAP ++ ++ I     Q  +   E +  +  +V  D    D
Sbjct: 516 FFALLIEQYSGWFPLW---VAPEQVRILPITEDQMQYAQSVAEGL--KEFRVKLDT---D 567

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G ++G +         P  ++VGSK V    V ++H + G    MSL+E  +       
Sbjct: 568 TGSKLGYRIRRGQTEKVPYMLVVGSKEVESGVVSVRHGVKGDLGQMSLDEFKSMIKEEIE 627

Query: 444 NN 445
           N 
Sbjct: 628 NK 629


>gi|77735697|ref|NP_001029542.1| threonyl-tRNA synthetase, cytoplasmic [Bos taurus]
 gi|110287979|sp|Q3ZBV8|SYTC_BOVIN RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73586669|gb|AAI03083.1| Threonyl-tRNA synthetase [Bos taurus]
 gi|296475710|gb|DAA17825.1| threonyl-tRNA synthetase [Bos taurus]
          Length = 723

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 163/417 (39%), Gaps = 57/417 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LWV SG ++ Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVTPNIYNSRLWVTSGHWEHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRVADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 453 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGD-- 508

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + +  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 509 ---IEVWNQAEKQL-------------EN-------SLNDFGEKWELNPGDGAFYGPKID 545

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    TF   DG D    V +    +
Sbjct: 546 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TFVSHDGDDKKKPVIIHRAIL 594

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +       V
Sbjct: 595 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHNAKFMV 648

Query: 380 FWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D D G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++ E I
Sbjct: 649 DIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRTRDNKVHGERTISETI 705


>gi|322368472|ref|ZP_08043041.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552488|gb|EFW94133.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 640

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+  L  ++    E     G  E+  P L   +LW +SG YD+Y  +M  L 
Sbjct: 262 GLPLYHPHGKTILRELSDYAGELNRGAGYDEVETPHLFRTELWKKSGHYDNYVDDMF-LL 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF  H  SYR+LP  +++    +R E R    G+ R   F 
Sbjct: 321 DVNDEEYGLKPMNCPGHATIFDQHSWSYRDLPIRYFENGKVYRKEQRGELSGLSRVWSFT 380

Query: 157 MKDAYSF 163
           + D + F
Sbjct: 381 IDDGHLF 387


>gi|160876899|ref|YP_001556215.1| tRNA synthetase class II [Shewanella baltica OS195]
 gi|160862421|gb|ABX50955.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS195]
 gi|315269103|gb|ADT95956.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS678]
          Length = 398

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            + G+  W P G     ++   +R    R G  E++ P     +LW  SG  D + + M 
Sbjct: 19  QAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFMKKELWQTSGHMDMFAENMF 78

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               + N    +  P        +F+  + S+R+LP   ++  L  R+E      G +R+
Sbjct: 79  FGGGKENMGEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFGLVHRNESSGSLNGCLRA 138

Query: 153 REFLMKDAYSF 163
           R+F   DA+ F
Sbjct: 139 RQFTQDDAHVF 149


>gi|148242044|ref|YP_001227201.1| threonyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|147850354|emb|CAK27848.1| Threonyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 609

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 147/393 (37%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    RE     G   +  P +   DLW  SG  D Y + M    
Sbjct: 226 GLVFWHPRGARMRLLIEDFWREAHFAGGYELLYTPHVADIDLWKTSGHLDFYRESMFGPM 285

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SY+ LP  + ++   +R E RP    G+MR R F
Sbjct: 286 TVDEREYQLKPMNCPFHVLTYASTLRSYKELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 344

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       K+      I      ++  +   + P   IG D   +   
Sbjct: 345 TQDDAHVFCL-PEQISDEILKILDLTETILSTFDFRNYEINLSTRPEKSIGDDAVWD--- 400

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G T+    K + D+ I      F                Y    D+   K+ D++ 
Sbjct: 401 LATKGLTEALQRKGW-DYKIDEGGGAF----------------YGPKIDL---KIEDAIG 440

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++      FG +Y          ADG      M    I G++     ++  
Sbjct: 441 RMWQCSTIQLDFNLPERFGLEYV--------AADGSRQRPIMIHRAIFGSLERFFGIMTE 492

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP +I L+ +   D+V   A E I + LS  G     D  GE++G  
Sbjct: 493 NYAGDFPFW---LAPEQIRLLPVT--DEVMGYA-ETIQSELSAAGIRSRIDRSGERLGKL 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               +    P+  ++G++      + ++ R  G
Sbjct: 547 IRSGEQQKIPVLAVIGAQEAEQGTLSLRSRRQG 579


>gi|16124719|ref|NP_419283.1| threonyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221233433|ref|YP_002515869.1| threonyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|22654137|sp|Q9AAX8|SYT_CAUCR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783515|sp|B8GZS7|SYT_CAUCN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13421637|gb|AAK22451.1| threonyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220962605|gb|ACL93961.1| threonyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 655

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 4/161 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +  KG+  W P G      +   +R   +  G  E+  P +    LW +SG  + +G 
Sbjct: 261 IQEEGKGMVFWHPKGWALYRVLEDYMRRRLDAAGYKEVKTPQILDRSLWEKSGHAEKFGH 320

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M        + +   P +      IF    KSYR LP    +     R E      G+M
Sbjct: 321 AMFMCESAEGEVLAVKPMNCPGHIQIFNVGQKSYRELPLRMAEFGACHRYEPSGAMHGIM 380

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGL 190
           R R F   DA+ F    + ++ S    F+  LR +++ LG+
Sbjct: 381 RVRAFTQDDAHIFCREEQVTEESAR--FIELLRSVYNDLGM 419


>gi|168070814|ref|XP_001786949.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660100|gb|EDQ48237.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 375

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 3/166 (1%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP G      +    RE Q + G  E+  P + +  LW +SG +
Sbjct: 38  LELFMFSEEAPGMPFYLPKGMTVRTELEQFSRELQLQEGYQEVRTPLMMNNRLWEQSGHW 97

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           + Y K+ +  ++ +D      P +      IF++ + SYR LP    +     R E    
Sbjct: 98  EHY-KDNMYFSEVDDATFALKPMNCPGHMLIFKNTLHSYRELPIRMMEFGQVHRHEFSGA 156

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             G+MR R F   DA+ + + PE  +   N+      R++   G +
Sbjct: 157 LNGMMRVRTFCQDDAHLY-VMPEQIEDEINQAISLIGRMYDIFGFE 201


>gi|111115550|ref|YP_710168.1| threonyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|216263396|ref|ZP_03435391.1| threonyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|122956324|sp|Q0SMD6|SYT_BORAP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110890824|gb|ABH01992.1| threonyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|215980240|gb|EEC21061.1| threonyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 581

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/405 (18%), Positives = 153/405 (37%), Gaps = 47/405 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKM 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGIMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T         ++    + ++ + G  S+     + P   +G D        
Sbjct: 325 QDDAHII-CTHSQVLDEIKEVLRFAIYMWSKFGFNSLKAYLSTKPDKFVGND-------- 375

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           +D   +     +    F +P E            I +   A Y    D+   K+ DSL  
Sbjct: 376 SDWEMSLKVLEEALSGFEVPYE------------IDKGGGAFYGPKIDL---KIVDSLER 420

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
             ++S    +          ++LP   + T+   DGK+    M     +G++     ++ 
Sbjct: 421 EWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGILI 470

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   +W   ++P +  +I +   +    D   K++ +    G  +  D+   ++ +
Sbjct: 471 EHYGGAFPLW---LSPIQAVIIPV---NNAVEDYAIKVFNKFKNEGMRIKLDNTSSRMNA 524

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +         P   I+G +   + K+ I+ R       + L+E +
Sbjct: 525 KIREYQAKKIPYMFIIGEREAKEEKISIRTRTNEQINGLELDEAL 569


>gi|302845190|ref|XP_002954134.1| hypothetical protein VOLCADRAFT_109913 [Volvox carteri f.
           nagariensis]
 gi|300260633|gb|EFJ44851.1| hypothetical protein VOLCADRAFT_109913 [Volvox carteri f.
           nagariensis]
          Length = 618

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  +S      F+  D +  YV   S+G+   R +  +I +  D KG
Sbjct: 349 TGRGIQGATSHCLGQNFSKMFGIQFEDDDRQKQYVWQNSWGL-TTRSLGVMIMTHADDKG 407

Query: 338 IIWPDSVAPFKISLINIKAHD------QVCRDACEKIYARLSKVGCDVFWDD-MGEQIGS 390
           ++ P  VAP ++ +I I          Q   +   ++   L K G  V  D  +    G 
Sbjct: 408 LVLPPRVAPKQVVIIPIPKASTTPETVQAMMEKVTELAEALEKAGVRVVTDTRVNYTPGW 467

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++   +L G PL++ +G K + +S V +  R TG +E +   +V
Sbjct: 468 KYNHWELKGLPLRMELGPKDMENSVVVLARRDTGAKEAVPWTDV 511



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   F   I+S+R+LP    Q     R E +     +RSREFL ++ 
Sbjct: 230 EKPIAIRPTSETVMYPYFAQWIRSHRDLPLRLNQWTNVVRWEFKYPTPFIRSREFLWQEG 289

Query: 161 YSFDLTPE 168
           ++   T E
Sbjct: 290 HTAFATQE 297


>gi|13508141|ref|NP_110090.1| prolyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2501039|sp|P75382|SYP_MYCPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1674123|gb|AAB96084.1| putative prolyl-tRNA synthetase [Mycoplasma pneumoniae M129]
          Length = 483

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 126/333 (37%), Gaps = 68/333 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E    ++++    SY+NLP  + Q    FR E   R   +R+ EF  ++ +  
Sbjct: 119 LVLRPTSEIAFCNLWKKQSFSYQNLPVIYNQWTCVFRAEKNTR-PFLRNSEFYWQETH-- 175

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                    GL S  + +ES  I     ++ I++         C
Sbjct: 176 -------------------------GLFSDGVNSESAAIAFWKLYQDIIVNQ------LC 204

Query: 224 SKDFMDFPIPSEN-TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              F+    P+E      +  ++ SI+    A   ATS  H+                  
Sbjct: 205 IPAFVGLKSPNERFAGAQNTWTVESIMPDGQALQCATS--HD------------------ 244

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                   G  ++ P   TF+    +       S GI + R++ A++ +  D  G++ P 
Sbjct: 245 -------LGQTFTKPFGLTFQNQANQQAIPYSFSCGI-STRILGALLLTHSDDFGLVLPW 296

Query: 343 SVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            VAP ++ L    K  D    +  +K+   L ++     +  +  Q+G Q    ++ G P
Sbjct: 297 KVAPIQVKLYLFDKKGDTKTVELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIP 356

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            Q+IV     +   V I +RLT ++   S E++
Sbjct: 357 FQLIVD----NPQTVNIFNRLTRVKTAYSFEQL 385


>gi|331092516|ref|ZP_08341338.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400737|gb|EGG80340.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 480

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 1/158 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++     +FG+ ++      +   + + H V   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQAATSHFFGSGFADAFDIKYLDKNNELHSVYETSWGL-TTRMIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +  +I I  H +   +   ++   L   G  V  D   +  G +F+  ++ 
Sbjct: 284 VLPPRIAPVQTRVIPIAQHKEGVLEKATELMNTLKAAGYAVNMDSSDKSPGWKFSEQEMQ 343

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P ++ +G K + +++V +  R T  +  +SL+E+  
Sbjct: 344 GIPTRIEIGPKDIENNQVVVVRRDTREKIVVSLDEITT 381



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP G    + + A + +    TG   + +P L   +L   E    + +  E+  
Sbjct: 38  KGCMVYLPNGYAIWEKIQADLDKRFKETGVENVYLPMLIPENLLQKEKDHIEGFAPEVAW 97

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    ++     M   PT E +  D +   ++SYR+LP  + Q    L++    RP    
Sbjct: 98  VTHGGNEPLQERMCIRPTSETLFCDHWSKTVQSYRDLPKIWNQWCSVLRWEKTTRP---F 154

Query: 150 MRSREFLMKDAYSFDLTPE 168
           +RSREFL ++ ++   T E
Sbjct: 155 LRSREFLWQEGHTIHATYE 173


>gi|157878081|pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878082|pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878083|pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878084|pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
          Length = 466

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D +G+
Sbjct: 208 GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDDRGL 266

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVA 395
           + P  +AP ++ ++ I   +   R  +A + +   L   G  V  DD  +   G +F   
Sbjct: 267 VLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEW 326

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +L G P +V +G K +   +  +  RL G +E + L
Sbjct: 327 ELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPL 361


>gi|55980084|ref|YP_143381.1| prolyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|81821927|sp|Q5SM28|SYP_THET8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14719699|pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 gi|14719700|pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 gi|14719702|pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 gi|14719703|pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 gi|14719710|pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719711|pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719712|pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719713|pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14423353|gb|AAK62359.1|AF384553_1 prolyl-tRNA synthetase [Thermus thermophilus]
 gi|55771497|dbj|BAD69938.1| prolyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 477

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D +G+
Sbjct: 221 GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDDRGL 279

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVA 395
           + P  +AP ++ ++ I   +   R  +A + +   L   G  V  DD  +   G +F   
Sbjct: 280 VLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +L G P +V +G K +   +  +  RL G +E + L
Sbjct: 340 ELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPL 374


>gi|304404287|ref|ZP_07385949.1| prolyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304347265|gb|EFM13097.1| prolyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 482

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT +++     F   + +  +    S+G+ + R++ A+I    D +G+
Sbjct: 225 GRAVQAGTSHYLGTNFAVAFDIKFLDRENQLQFTHTTSWGV-STRLIGALIMVHGDDRGL 283

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
             P  VAP +  +I I   K  D V     ++++A+L   G     DD  +   G +F  
Sbjct: 284 ALPPKVAPTQAIMIPIGPPKTRD-VVMPRVDELFAQLKAAGVRTRVDDRSDVSPGWKFNE 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ G PL++ +G +   + +  +  R++G
Sbjct: 343 YEMRGVPLRIEIGPRDCENGQAVLVSRVSG 372


>gi|29840712|ref|NP_829818.1| threonyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301681|sp|Q821I3|SYT_CHLCV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29835062|gb|AAP05696.1| threonyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 635

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 162/430 (37%), Gaps = 54/430 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  +   KL L +    + S G+  + P G    D +    +      G  ++  P L 
Sbjct: 236 RDHRVLGAKLDLFSQ--QECSAGMPFFHPRGMIVWDALIGYWQRLHQLAGYKQILTPQLM 293

Query: 76  SADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           +  LW  SG + +Y   M  L  D  D A+   P +       +++ + SY+  P    +
Sbjct: 294 NRSLWETSGHWSNYKANMYTLKIDEEDYAI--KPMNCPGCMLYYKTRLHSYKEFPLRIAE 351

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-- 191
           I    R E+     G+MR R F   DA+ F LTPE  +     +      ++   GL+  
Sbjct: 352 IGHVHRYEVSGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILNLVSELYSTFGLEYH 410

Query: 192 -SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             +  R E   IG D   E   LA +           ++  + + NT F  II+      
Sbjct: 411 LELSTRPEKDTIGSD---ELWELATSA----------LERALINSNTPF--IINPGD--- 452

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG 307
              A Y    D+H           K    R  + G I    +   ++ L     +  A G
Sbjct: 453 --GAFYGPKIDIH----------VKDAIQRTWQCGTIQLDMFLPERFEL----EYTNAQG 496

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   + +     G++     ++     GK  +W   ++P  I LI +    Q      +
Sbjct: 497 EKSTPIMLHRALFGSIERFLGILIEHFKGKFPLW---LSPEHIRLITVADRHQ---PHAK 550

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ A   K+G  V  DD  E +  +   A  +     V +G + + ++ + I+ R   + 
Sbjct: 551 ELAAAWQKLGLVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEENTLAIRTRDNRVL 610

Query: 427 EDMSLEEVIN 436
             M++E  IN
Sbjct: 611 NAMTVETFIN 620


>gi|330932301|ref|XP_003303723.1| hypothetical protein PTT_16056 [Pyrenophora teres f. teres 0-1]
 gi|311320083|gb|EFQ88182.1| hypothetical protein PTT_16056 [Pyrenophora teres f. teres 0-1]
          Length = 776

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP GQ   + + A +REE    G  E+  P + ++ LW  SG +  Y  +
Sbjct: 347 HEFSPGSCFFLPHGQIIYNTLQAFLREEYWNRGYQEVGSPNMYNSALWKISGHWQHYADD 406

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF+   +SYR LP       +  R+E      G+ R
Sbjct: 407 MFTFDVEKEKWAL-KPMNCPGHCLIFKHRERSYRELPIRMADFGILHRNEASGALTGLTR 465

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDL 206
            R F   D + F  T +      + +F     ++ + G  +  M+  + P G  GD+
Sbjct: 466 VRRFQQDDTHVF-CTQDQITEEISALFDFLRAVYGKFGF-TFKMKLSTRPEGFLGDI 520


>gi|307328733|ref|ZP_07607905.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306885682|gb|EFN16696.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 412

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 149/393 (37%), Gaps = 50/393 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   IR+ + R G   +  P L   +L+  SG +  Y  +M    
Sbjct: 23  GLPYWLPDGATVRHTLEEYIRDAERRAGYRHVYSPVLGKRELYELSGHWSHYSDDMFPPM 82

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   + ++  P+       I+RS   SYR LP    ++   +R EL     G+ R R   
Sbjct: 83  ELGAEQVVLRPSLCPHHAVIYRSRGHSYRELPLRMAELGGMYRSELSGVLGGLTRVRAIQ 142

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLAD 215
           + DA+ F  T +              R +  LG+     R    GP G     +++   +
Sbjct: 143 LNDAHIF-CTLDQVADEAGAALEMIRRAYEALGMTPARYRLSLPGPGG-----KYVAAPE 196

Query: 216 TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                     D +D   +P E             VE   A Y    DV   ++ D     
Sbjct: 197 MWRRSTALLTDVLDGSGLPYEA------------VEGEAAFYGPKIDV---QVADGAGRE 241

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESS 332
             +S   ++    F+   ++ L     + G DG  H  V +    IG++ R VA +IE  
Sbjct: 242 STLSTVQVD----FHQPEQFDL----HYIGPDGARHRPVMVHRSIIGSVERAVAHLIE-E 292

Query: 333 HDGKGIIWPDSVAPFKISLINIK----AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           H G    W   +AP ++ ++ I      H +     C  +  R    G +         +
Sbjct: 293 HGGAFPAW---LAPTQLVVLPISEAELPHAEALVRRCVDLGLRAELAGPERG------SL 343

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G++   A L+  P Q +VG++   D +V ++ R
Sbjct: 344 GARIREARLV--PYQAVVGAREAGDDRVALRLR 374


>gi|157375257|ref|YP_001473857.1| threonyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|189083624|sp|A8FV56|SYT_SHESH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157317631|gb|ABV36729.1| threonyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
          Length = 642

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 141/397 (35%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++  +    E+  P +    LW  SG +D Y  
Sbjct: 256 MQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTYQEVKGPLMMDRVLWERSGHWDKYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTNSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   +         +   G K I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHVF-CTEDQVQQEVSACIKMVYDTYETFGFKDIVVKLSTRPEKRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    ++    Q   +       +P E   +   I                       L
Sbjct: 432 -DMWDRSEEALKQALTANGIAYEILPGEGAFYGPKIEFT--------------------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      Y+LP  + AT+   D       M    I G++  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDYALPGRLGATYVAEDNSRQTPVMIHRAILGSLER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++   + GK   W   +AP ++ ++NI        D  +++     + G     D  
Sbjct: 521 FLGILIEEYAGKFPTW---LAPMQVVVMNITDKQS---DYVDEVVNIFKESGIRASKDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++VG + + + +V ++ R
Sbjct: 575 NEKIGFKIREHTLRRVPYLLVVGDQEMDNKEVAVRTR 611


>gi|86607055|ref|YP_475818.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|86555597|gb|ABD00555.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 603

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M  + 
Sbjct: 223 GLPLWTPKGTTLRWVLEDFLKQEQLKRGYLPVVTPHIARVDLFKISGHWQKYREDMFPMM 282

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
                A   ++  +  P +      I++S ++SYR+LP  + +    +R E      G+ 
Sbjct: 283 AESEEARAAEQGFVMKPMNCPFHIQIYKSELRSYRDLPLRYAEFGTVYRYEQSGELGGLT 342

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F + DA+ F + P+  +  + K+    L +F +L LK    R
Sbjct: 343 RVRGFTVDDAHLF-VRPDQLEEEFLKVVDLILVVFDKLKLKDFRAR 387


>gi|56475898|ref|YP_157487.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|73919766|sp|Q5P7X5|SYT_AZOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56311941|emb|CAI06586.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 638

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 15/175 (8%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H+KG   W          V   +R      G  E+  P +    LW +SG +D Y
Sbjct: 261 GMVFWHAKGWTLW--------QQVEQYMRRTILDNGYQEVKTPQIVDRSLWEKSGHWDMY 312

Query: 90  GKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            + M    +++ D A+   P +      IF   +KSYR+LP    +     R+E      
Sbjct: 313 SELMFTTQSEKRDYAV--KPMNCPCHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALH 370

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP 201
           G+MR R F+  DA+ F    +    +    F+  L +++   G   I ++  + P
Sbjct: 371 GIMRVRNFVQDDAHIF--CADEQVQTEAAAFIELLQKVYADFGFTEILIKLSTRP 423


>gi|22299745|ref|NP_682992.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|73919834|sp|Q8DGW0|SYT_THEEB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22295929|dbj|BAC09754.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 605

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  W P G      +   +++EQ + G + +  P +   DL+  SG +  Y ++M  L 
Sbjct: 215 GLPLWTPRGTVLRSTLEDFLKKEQLKRGYLPVVTPHIARVDLFKTSGHWQKYKEDMFPLM 274

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
                A  +++  +  P +      I++S ++SYR+LP    +    +R E      G+ 
Sbjct: 275 AEDAEAAAHEQGFVLKPMNCPFHIQIYKSELRSYRDLPLRLAEFGTVYRYEQSGELGGLT 334

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           R R F + D++ F +TPE     +  +    L +F  L L     R
Sbjct: 335 RVRGFTVDDSHLF-VTPEQLDAEFLNVVDLILTVFRCLRLNKFKAR 379



 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++  +  ++   + G    W   +AP ++ L+ +       R   E++ A+L + G  V
Sbjct: 479 GSLERLIGILIEEYAGDFPFW---LAPEQVRLLPVGDEQ---RPYAERVAAQLRERGVRV 532

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D  G+++G Q   A+    P+  I+G+K V    V I+ R  G     +LE +I
Sbjct: 533 SVDRSGDRLGKQIRNAETQKIPVMGIIGAKEVEHETVSIRTRAAGDVGTFALEHLI 588


>gi|329296183|ref|ZP_08253519.1| threonyl-tRNA synthetase [Plautia stali symbiont]
          Length = 642

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 147/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWDNYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 VMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVRDEVNSCIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                + D  E                   D  + +  N+I  ++     A      E  
Sbjct: 432 ----EMWDRAE------------------VDLAEALKENNIPFEYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-ADGKDHYVQMGSYGIGAMR 323
           L D L        R  + G +      +SLP  + AT+ G  + +   V +    +G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPKRLDATYVGETNDRQTPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP +  ++NI        +   ++  +L   G  V  D 
Sbjct: 520 RFIGILTEEFAG---FFPSWLAPVQAVVMNITDGQA---EYVSELTKKLQNAGIRVKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGEKEVEAGKVAVRTR 611


>gi|21222189|ref|NP_627968.1| threonyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|10432482|emb|CAC10316.1| putative threonyl tRNA synthetase [Streptomyces coelicolor A3(2)]
          Length = 430

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 163/418 (38%), Gaps = 45/418 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   +RE + R G   +  P L   +L+  SG ++ Y  +M    
Sbjct: 48  GLPYWLPDGAVVRHTLEEYVREAERRAGYRHVYSPVLGKRELYEISGHWEHYRDDMFPPM 107

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-RSREFL 156
           +   + ++  P+       ++RS  +SYR LP    ++   +R E     G + R R   
Sbjct: 108 ELGAEEVVLRPSLCPHHALVYRSRARSYRELPLRIAELGAMYRSEPSGVLGGLSRVRAIH 167

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLAD 215
           + DA+ F  TP+ +            R    LG+++   R    GP G     +++   +
Sbjct: 168 LNDAHIF-CTPDQAAAEARAALGLIRRAHADLGIRAARHRLSLPGPGG-----KYVADPE 221

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                    ++ +D  +P E             VE   A Y    DV  E   D+     
Sbjct: 222 LWRRATALLEEALDG-LPYEA------------VEGEAAFYGPKIDVQIE---DAAGRES 265

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSH 333
            +S   I+      FG +Y         G DG  H  V +    IG++ R VA +IE +H
Sbjct: 266 TLSTVQIDFHQPERFGLRY--------LGPDGARHRPVMVHRSVIGSVERAVAHLIE-AH 316

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV-FWDDMGEQIGSQF 392
            G    W   +AP ++ ++ +       R+A   +  + + +G      D     +G++ 
Sbjct: 317 GGAFPAW---LAPVQLVVLPVAG---AQREAAYALVRQATDLGLRAEVADPERGSLGARV 370

Query: 393 AVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             A  +  P Q ++G +   D   V+++ R       +S  E+++  + R     P L
Sbjct: 371 RAARKV--PYQAVIGVREAQDGDLVDVRLRDGRRPGQLSGTELLHRITDRVEARGPEL 426


>gi|85709956|ref|ZP_01041021.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85688666|gb|EAQ28670.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 671

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 161/444 (36%), Gaps = 91/444 (20%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G +    + A +R + +  G  E+  P L     W +SG +  Y +
Sbjct: 265 LQEEAHGSVFWHPKGYRIWRELEAYMRRKMDGGGYREIKTPQLMDVRQWTQSGHWGKYAE 324

Query: 92  EML-------------------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            M                    ++AD  D  M   P +      +F+  I SYR+LP   
Sbjct: 325 NMFAVPDIVPDVDDSGEAEASPKVADDAD-WMAIKPMNCPAHVLVFKQGITSYRDLPIRL 383

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R+E      G+MR R+F   DA+ F               V  +R F  L   
Sbjct: 384 GEMGCCHRNEPHGALHGLMRVRQFTQDDAHIF---------CTEDQVVEEVRKFCAL--- 431

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  +  +  D    + V       + F S++           D+D         EQ
Sbjct: 432 -------ADSVYRDFGFSYHVKLALRPEKRFGSEE-----------DWDK-------AEQ 466

Query: 252 WTAPYAATSDVHNEKL-FDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
                 A + + NE+  ++ LP      A  +E      +G  +  GT      LP  + 
Sbjct: 467 ELRDAVAEAGMDNEEYGWEELPGEGAFYAPKLEWHLTDAIGRTWQVGTIQGDRVLPDRLD 526

Query: 300 ATFKGADGKDHYVQM------GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           AT+ G DG+ H   M      GSY     R +  +IE  H    +  P  +AP +  +  
Sbjct: 527 ATYVGEDGEKHRPVMLHRAIFGSY----ERFIGILIE--HFAGRL--PSWLAPVQAVVAT 578

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      D   +  A+L   G  V  D   E+I  +     L   P  ++VG +   +
Sbjct: 579 IVSD---ADDYANEATAKLQAAGIRVESDLRNEKINYKVREHSLAKVPHLLVVGKREAEE 635

Query: 414 SKVEIKHRLTGIRED--MSLEEVI 435
             V +  R  G +E   MSL+E I
Sbjct: 636 GTVAV--RTLGEKEQRVMSLDEAI 657


>gi|310659541|ref|YP_003937262.1| prolyl-tRNA synthetase 2 [Clostridium sticklandii DSM 519]
 gi|13633967|sp|Q9L4Q8|SYP_CLOSD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6899998|emb|CAB71307.1| prolyl tRNA synthetase [Clostridium sticklandii]
 gi|308826319|emb|CBH22357.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Clostridium sticklandii]
          Length = 481

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 2/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G        ++     TF+G  G+  Y    S+G  + R++  +I    D +G+
Sbjct: 226 GKALQSGTSHNLAQHFTKAFDITFQGRTGELEYPHHTSWG-ASTRLIGGIIMVHGDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADL 397
           + P  VAP ++ +I I  + +   D   +I   L   G  V   DD     G +F   ++
Sbjct: 285 VLPPRVAPTQVVIIPIAQNKEGVLDKAYEIKKELEAKGIRVTLDDDTNYSPGWKFNQYEM 344

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G PL++ +G + + ++   I  R T  ++  SL+ +
Sbjct: 345 KGVPLRLEIGPRDIENNVAMIARRDTLSKDSYSLDNI 381


>gi|149057086|gb|EDM08409.1| threonyl-tRNA synthetase-like 2, isoform CRA_b [Rattus norvegicus]
          Length = 708

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 165/416 (39%), Gaps = 59/416 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y   
Sbjct: 321 HDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTEVLSPNMYNSKLWETSGHWQHYSNN 380

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 381 MFTFDIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPVRFADFGVLHRNELSGTLTGLTR 439

Query: 152 SREFLMKDAYSFDLTPE------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R F   DA+ F +  +      G  H    ++ ++   F +L L + P           
Sbjct: 440 VRRFQQDDAHIFCMVEQIEEEIKGCLHFLQSVYSTFGFSF-QLNLSTRP----------- 487

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+     GET+++   D  +  + +  T F     +N       A Y    D+   
Sbjct: 488 --EHFL-----GETEIW---DEAERQLQNSLTGFGKPWKINPGD---GAFYGPKIDI--- 531

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           K+ D++    + +   ++    F    +++L   +  K  D K+  V +    +G++  +
Sbjct: 532 KIKDAIGRYHQCATIQLD----FQLPIRFNLTYVS--KDGDDKNRPVIIHRAILGSVERM 585

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG------CDV 379
            A++  ++ GK   WP  ++P ++ +I +         ACE    ++SK         DV
Sbjct: 586 IAILSENYGGK---WPLWLSPRQVMIIPVGP-------ACENYALQVSKECFEEGFMADV 635

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DD    +  +   A L  +   ++VG K   ++ V ++ R   I  ++S+  VI
Sbjct: 636 DLDDSC-TLNKKIRNAQLAQYNFILVVGEKEKLNNSVNVRTRDNKIHGEISITSVI 690


>gi|149238003|ref|XP_001524878.1| threonyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451475|gb|EDK45731.1| threonyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 754

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +   +R E  + G  E+  P + S  LW  SG + +Y 
Sbjct: 358 IFNEVSPGSAMWLPHGTRIYNTLVDTLRYEYRKRGYEEVITPNMYSTKLWETSGHWQNYK 417

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 418 ENMFSF-EVEKETFGLKPMNCPGHCVLFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 476

Query: 150 MRSREFLMKDAYSFDLT 166
            R R F   DA+ F  T
Sbjct: 477 TRVRRFQQDDAHIFCTT 493


>gi|33866012|ref|NP_897571.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|73919836|sp|Q7U662|SYT_SYNPX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33638987|emb|CAE07993.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 611

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 149/393 (37%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEEFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYAESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
           + +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 EVDEREYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       K+     RI       +  +   + P   IG D   +   
Sbjct: 348 TQDDAHVFCL-PEQISDEILKILDLTERILSTFDFNTYEINLSTRPEKSIGDDAVWD--- 403

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +    K +                    I E   A Y    D+   K+ D++ 
Sbjct: 404 LATKGLIEALERKGWK-----------------YKIDEGGGAFYGPKIDL---KIEDAIG 443

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++    F    ++ L     +  ADG      M    I G++     ++  
Sbjct: 444 RMWQCSTIQLD----FNLPERFKL----DYVAADGSKQRPIMIHRAIFGSLERFFGIMTE 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP ++ L+ +   D+V +   E +  +L++ G     D  G+++G  
Sbjct: 496 NYAGDYPFW---LAPEQVRLLPVT--DEV-QPYAESLLDQLTQAGVRATIDRSGDRLGKL 549

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               + +  P+  ++G+K    + V ++ R  G
Sbjct: 550 IRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDG 582


>gi|253583464|ref|ZP_04860662.1| threonine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834036|gb|EES62599.1| threonine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 637

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 99/459 (21%), Positives = 185/459 (40%), Gaps = 68/459 (14%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + K +L +L+E    AE   H+ +   L    + ++  G   +LP G    + +  + R 
Sbjct: 226 KLKAYLTLLEE----AERRDHRKLGKELDLFFVSEYGPGFPIFLPKGMVIRNTLIDLWRR 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    G  E++ P + + +LW  SG + +Y +E +  +  +D      P +       ++
Sbjct: 282 EHTLAGYQEITTPIMLNKELWEISGHWFNY-RENMYTSTIDDTEFAIKPMNCPGGILAYK 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-------GSK 171
             + SY++ P    ++    R E      G+MR R F   DA+ F +TP+       G  
Sbjct: 341 YQLHSYKDFPIRCGELGTVHRHEFSGALHGLMRVRSFTQDDAHIF-MTPDQIEEEIIGVV 399

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
              +K +       + + L + P +A    IG +       + +  E  +  + D +  P
Sbjct: 400 ELIDKFYSKLFGFEYHIELSTKPEKA----IGSN------EIWEKAEAALAGALDKIGKP 449

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                 D               A Y    D    K+ D++        R  + G I    
Sbjct: 450 YKLNPGD--------------GAFYGPKLDF---KIKDAI-------GRTWQCGTI---Q 482

Query: 292 TKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP     ++ G DG+ H  V +     G++     ++     G   +W   +AP +
Sbjct: 483 LDFNLPERFDISYIGEDGEKHRPVMIHRVVYGSIERFIGILIEHFAGAFPLW---LAPTQ 539

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVG 407
           + ++ I  +D+V   A E I+  L + G     DD  E IG +   A+     P+Q+I+G
Sbjct: 540 VKILTI--NDEVVPYAKE-IFKALQERGIRAEIDDRAESIGYKIREANGKYKIPVQLILG 596

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRF 442
              V + +V I+   +  +E M L+E    +++ A  RF
Sbjct: 597 KNEVENREVNIRKFGSQQQESMKLDEFLDIIVDEAKIRF 635


>gi|222640294|gb|EEE68426.1| hypothetical protein OsJ_26793 [Oryza sativa Japonica Group]
          Length = 701

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 178/441 (40%), Gaps = 47/441 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 292 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 347

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y KE + + +   +     P +      +F
Sbjct: 348 QQYRDRGYQEVLSPNIYNMQLWETSGHAANY-KENMFVFEIEKQEFGLKPMNCPGHCLMF 406

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F    +        +
Sbjct: 407 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRESQIKDEVKAVL 466

Query: 178 -FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            F++Y  ++   G K  + +        GD     I   +  E Q+  ++   +F  P +
Sbjct: 467 DFINY--VYEIFGFKYELELSTRPEKYLGD-----IETWNKAEQQL--TEALNEFGKPWQ 517

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             + D             A Y    D+    +FD+L    + +   ++      F   YS
Sbjct: 518 INEGDG------------AFYGPKIDI---GVFDALKRKFQCATLQLDFQLPLRFKLTYS 562

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               A        +  V +    +G++  + A++   ++GK   WP  ++P +  + +I 
Sbjct: 563 AEDEAKL------ERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSIS 613

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           ++     +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +
Sbjct: 614 SNSV---EYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQ 670

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           V ++ R       +S++++I 
Sbjct: 671 VSVRVRDKAELATVSIDDIIT 691


>gi|258644607|dbj|BAI39857.1| putative threonyl-tRNA synthetase [Oryza sativa Indica Group]
          Length = 749

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 178/441 (40%), Gaps = 47/441 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 340 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 395

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y KE + + +   +     P +      +F
Sbjct: 396 QQYRDRGYQEVLSPNIYNMQLWETSGHAANY-KENMFVFEIEKQEFGLKPMNCPGHCLMF 454

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F    +        +
Sbjct: 455 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRESQIKDEVKAVL 514

Query: 178 -FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            F++Y  ++   G K  + +        GD     I   +  E Q+  ++   +F  P +
Sbjct: 515 DFINY--VYEIFGFKYELELSTRPEKYLGD-----IETWNKAEQQL--TEALNEFGKPWQ 565

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             + D             A Y    D+    +FD+L    + +   ++      F   YS
Sbjct: 566 INEGDG------------AFYGPKIDI---GVFDALKRKFQCATLQLDFQLPLRFKLTYS 610

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               A        +  V +    +G++  + A++   ++GK   WP  ++P +  + +I 
Sbjct: 611 AEDEAKL------ERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSIS 661

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           ++     +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +
Sbjct: 662 SNSV---EYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQ 718

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           V ++ R       +S++++I 
Sbjct: 719 VSVRVRDKAELATVSIDDIIT 739


>gi|156120539|ref|NP_001095415.1| threonyl-tRNA synthetase, mitochondrial [Bos taurus]
 gi|152941102|gb|ABS44988.1| threonyl-tRNA synthetase-like 1 [Bos taurus]
          Length = 718

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 157/414 (37%), Gaps = 65/414 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G +  + + A I+ E  R G  E+  PTL SA LW  SG ++ Y +
Sbjct: 314 FHELSPGSCFFLPRGTRVYNALVAFIKAEYTRRGFSEVKTPTLFSAKLWELSGHWEHYRE 373

Query: 92  EMLRLA----DR------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +M  L     DR            +   +   P +      +F    +S+R LP      
Sbjct: 374 DMFALQPPGLDRPSSSQSDHSASPHTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADF 433

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R E      G+ R R F   DA+ F   P+  +            ++  LG  S  
Sbjct: 434 GALHRAEASGSLGGLTRLRCFQQDDAHIF-CAPDQLEAEIRGCLDFLHSVYTILGF-SFH 491

Query: 195 MRAESGPIGGDLSHEFI---VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           M   + P G      F+    L D  E QV   +   +F  P + +  D           
Sbjct: 492 MALSTRPSG------FLGEPCLWDQAE-QVL-QQALEEFGAPWDISPGDG---------- 533

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGK- 308
             A Y    DVH   + D+L        R  + G I      + LP+     +KG  G  
Sbjct: 534 --AFYGPKIDVH---VRDAL-------GRPHQCGTI---QLDFQLPLRFDLQYKGQLGAL 578

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
           +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I +    ++  R+A + 
Sbjct: 579 ERPVLIHRAVLGSVERMLGVLAESCGGK---WPLWLSPFQVVVIPVGTEQEEYAREAQQS 635

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           + A       D    D G  +  +   A L  +  Q +VG +  S   V I+ R
Sbjct: 636 LRAAGLVGDLDA---DSGLTLSRRIRRAQLAHYNFQFVVGQREQSKRTVNIRTR 686


>gi|154151503|ref|YP_001405121.1| prolyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|166980134|sp|A7I9R7|SYP_METB6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154000055|gb|ABS56478.1| prolyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 478

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + + +++G + + G  +S   +  ++  +G+        YGI + R +AA+I    D KG
Sbjct: 221 NGKTLQIGTVHHLGNHFSRTFNIQYEDKNGEQKEAYQTCYGI-SERCIAALISLHGDDKG 279

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           +I P +VA F++ ++ I   K H+ V   A  K+   L   G  V  D    + G+++  
Sbjct: 280 LILPPTVATFQVVIVPITIGKRHEDVLA-AAGKLKNDLENAGLRVTLDTRDLRPGAKYYW 338

Query: 395 ADLLGFPLQVIVGSKFVSDSK 415
            ++ G PL++ +G + +   K
Sbjct: 339 WEIRGVPLRLELGPRDLDSGK 359


>gi|332220155|ref|XP_003259223.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 2
           [Nomascus leucogenys]
          Length = 588

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 148/397 (37%), Gaps = 69/397 (17%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDKA--- 103
           D +  + + E  R G  E+  PTL S  LW +SG ++ Y ++M  +    +DR   +   
Sbjct: 203 DQLRQLFKAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSD 262

Query: 104 ---------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                    +   P +      +F    +S+R LP          R E      G+ R R
Sbjct: 263 DSTRHITDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGSLRGLTRLR 322

Query: 154 EFLMKDAYSFDLTPE-----GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            F   DA+ F  T +      S   + +   + L    RL L + P    SG +G     
Sbjct: 323 CFQQDDAHIFCTTDQLEAEIQSCLDFLRSVYAVLGFSFRLALSTRP----SGFLGDP--- 375

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                         C  D  +  +     +F +   LNS      A Y    DVH   L 
Sbjct: 376 --------------CLWDQAEQVLKQALKEFGEPWDLNSGD---GAFYGPKIDVH---LH 415

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVV 325
           D+L        R  + G I      + LP+     +KG  G  +  V +    +G+M  +
Sbjct: 416 DAL-------GRPHQCGTI---QLDFQLPLRFDLQYKGQAGALERPVLIHRAVLGSMERL 465

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDM 384
             V+  S  GK   WP  ++PF++ +I +    ++  R+A + + A       D    D 
Sbjct: 466 LGVLAESCGGK---WPLWLSPFQVVVIPVGTEQEEYAREAQQSLQAAGLVSDLDA---DS 519

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           G  +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 520 GLTLSRRIRQAQLAHYNFQFVVGQKEQSKRTVNIRTR 556


>gi|309366994|emb|CAP20463.2| CBR-PARS-2 protein [Caenorhabditis briggsae AF16]
          Length = 265

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 40/219 (18%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
           P++A+SG  GG +SHE+ V +   E       DF+D+                +  ++ T
Sbjct: 14  PVQADSGIHGGHISHEYHVRSSLEE-------DFVDY-----------CTQCGTFSKEET 55

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               +      +K+              +E+ H F+ GTKYS  + A F+   GK  Y  
Sbjct: 56  PKMCSRCSASPQKI------------ASVEIAHTFHLGTKYSEALGAKFQ---GKPFY-- 98

Query: 314 MGSYGIGAMRVVAAVIE-SSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
           M  +GIG  R++ A I+  S   K +  P +++PF   +I  K+    V  +      +R
Sbjct: 99  MCCFGIGVSRLLPATIDLLSVSDKALRLPRAISPFDAVIIVKKSLMSNVIVEMTSSSASR 158

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSK 409
             K G  +  DD  E   G +   A+ LG P  +++ ++
Sbjct: 159 YLKGG--ILLDDRIEMSPGKRIHEANRLGIPFIIVLANE 195


>gi|198284332|ref|YP_002220653.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666034|ref|YP_002426993.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|259516307|sp|B7J7T0|SYT_ACIF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516338|sp|B5EN57|SYT_ACIF5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198248853|gb|ACH84446.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518247|gb|ACK78833.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 644

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/388 (19%), Positives = 142/388 (36%), Gaps = 41/388 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P+G +    +    +E     G   +  P +    LW  SG  D Y + M    
Sbjct: 262 GLVFWHPMGSRVRRVIEDFWKEAHVEAGYDLLYTPHIAHEQLWYTSGHKDFYSESMFDPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
               +A    P +      I++  + SYR+LP  + ++   +R E+     G+MR R F 
Sbjct: 322 QDEGQAYQLKPMNCPFHILIYKDKLHSYRDLPIRWAELGTVYRHEMSGALHGLMRVRGFT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F   P+  +     + V   +I    G     +   + P G  +  + I  A T
Sbjct: 382 QDDAHVF-CRPDQIEAEIGAVLVLVRKILGTFGFDQYEINLSTRP-GHSVGSDEIWDAAT 439

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +    +  +++ + +    F                Y    D+   K+ D++    +
Sbjct: 440 QALRNALERAGLEYQVDAGGGAF----------------YGPKIDL---KIQDAIGRKWQ 480

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
            S   ++          ++LP   +  +   DG      M    I G++     V+   +
Sbjct: 481 CSTVQLD----------FNLPERFAMEYVAEDGARKVPIMVHRAIFGSIERFFGVLIEHY 530

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +GK  +W   +AP +  ++ I  H     +  E +   L K G     D   E+IG +  
Sbjct: 531 EGKFPVW---LAPVQAVVLPISEH---YSEYAESVSDVLVKRGIRAETDLRNEKIGYKIR 584

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              L   P  ++VG +      V ++ R
Sbjct: 585 AHTLRRVPYLLVVGEREKEAGTVAVRDR 612


>gi|330834227|ref|YP_004408955.1| prolyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566366|gb|AEB94471.1| prolyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 480

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   W+P G K   NV ++IR+  + TG  E+  P L   +L   ES     + KE+  
Sbjct: 34  KGAGVWMPYGFKIRHNVISLIRKLLDETGHEEILFPLLIPEELLKKESEHIRGFEKEVFW 93

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    ++ +       PT E  +T +    I+ Y  LP  FYQI   FR E +    ++R
Sbjct: 94  VTQGGEEKLETRFALRPTSEVAITLMESLWIRGYSQLPRKFYQIVSVFRYETKATRPLIR 153

Query: 152 SREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            RE    K+A++   T E +     +    Y + F  LG+
Sbjct: 154 VRELTTFKEAHTIHETYEDAAKQVKEAVEIYSKFFDILGI 193



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G   + G  ++  M    + ADG   Y    SYGI + RV+A VI  + D  G 
Sbjct: 222 GRALQIGTAHHLGQHFTKAMDYKIQRADGTLTYPHQTSYGI-SDRVIATVISINGDDHGP 280

Query: 339 IWPDSVAPFKISLINI--KAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQI-GSQFA 393
           +    +AP +  +I I  K+ +   +     E++ + L+  G     D   ++  G +F 
Sbjct: 281 VLSPVIAPIEAVIIPIPGKSEEDTKKVFSYAEEVRSTLASNGIRAVMDSSEDKTPGEKFY 340

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           + +L G P++V  G + ++   V +K R T
Sbjct: 341 IWELKGVPIRVETGVREMNSGSVYLKRRDT 370


>gi|207344345|gb|EDZ71519.1| YIL078Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 689

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/416 (18%), Positives = 160/416 (38%), Gaps = 50/416 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 296 LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYK 355

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 356 ENMFTF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 414

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
            R R F   DA+ F  T +  +     +F     I+   G +   M   + P   +G   
Sbjct: 415 TRVRRFQQDDAHIF-CTHDQIESEIENIFNFLQYIYGVFGFE-FKMELSTRPEKYVGK-- 470

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY---AATSDVH 263
               I   D  E++                        L S +++W   +   A     +
Sbjct: 471 ----IETWDAAESK------------------------LESALKKWGGNWEINAGDGAFY 502

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             K+   + +  R   +   +   F    ++ L   +  + ++  +  V +    +G++ 
Sbjct: 503 GPKIDIMISDALRRWHQCATIQLDFQLPNRFELEFKSKDQDSESYERPVMIHRAILGSVE 562

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            + A++     GK   WP  ++P ++ ++ +    Q      E +  +L   G     D 
Sbjct: 563 RMTAILTEHFAGK---WPFWLSPRQVLVVPVGVKYQ---GYAEDVRNKLHDAGFYADVDL 616

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVI 435
            G  +  +     +L +    IVG + +++  V I++R      G    +S+EEV+
Sbjct: 617 TGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNATVSVEEVL 672


>gi|150865919|ref|XP_001385328.2| threonyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054]
 gi|149387175|gb|ABN67299.2| threonyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054]
          Length = 730

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             ++ S G   WLP G +  + +   IR+E    G  E+  P + +  LW  SG + +Y 
Sbjct: 333 FFNEMSPGSAFWLPHGTRIYNALVQFIRDEYQVRGFDEVITPNMFNHKLWETSGHWGNYK 392

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    D   +     P +      IF+S  +SYR LP+      +  R+E      G+
Sbjct: 393 ENMFTF-DVEKETFGLKPMNCPGHCVIFKSRERSYRELPWRVADFGVLHRNEFSGALSGL 451

Query: 150 MRSREFLMKDAYSFDLT 166
            R R F   DA+ F  T
Sbjct: 452 TRVRRFQQDDAHIFCTT 468


>gi|326538797|gb|ADZ87012.1| threonyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 661

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 238 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 294 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 353

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 354 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLQI 412

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 413 NDHILSVYKDFGFEEITIKLSTRPEKRVGSD 443


>gi|320159528|ref|YP_004172752.1| threonyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319993381|dbj|BAJ62152.1| threonyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 623

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G   ++ +  + +E + + G   +  P L   DL++ SG    Y + M    
Sbjct: 241 GLPLWTPRGGAIIEEIEKLAKEMEFKYGYERVRTPHLAKEDLYLRSGHLPYYAESMYPPM 300

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFL 156
           +         P +  +   IF S  +SYR LP    +    +R E     FG+MR R   
Sbjct: 301 ELEGVRYYVKPMNCPMHHKIFASKPRSYRELPVRLAEYGTCYRYEKSGELFGLMRVRSMQ 360

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMR 196
           M D++ +      S+  + + FV     YL  F   G++   MR
Sbjct: 361 MNDSHIY-----CSEEQFEQEFVGVIHLYLEYFRLFGIQDYLMR 399


>gi|73981323|ref|XP_860781.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 5
           [Canis familiaris]
          Length = 636

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 156/394 (39%), Gaps = 73/394 (18%)

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----ADR------------ 99
           ++  E  R G  E+  PTL SA LW  SG ++ Y ++M  L    +DR            
Sbjct: 256 LLTAEYTRRGFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTSH 315

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMK 158
           +   +   P +      +F    +S+R LP       +  R E     G + R R F   
Sbjct: 316 STDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQD 375

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFH-------RLGLKSIPMRAESGPIGGDLSHEFI 211
           DA+ F   P+  +       + +LR  +       RL L + P    SG +G        
Sbjct: 376 DAHIF-CAPDQLEEEIQGC-LDFLRSVYAVLGFSFRLALSTRP----SGFLGES------ 423

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L D  E QV   +   +F  P +    D             A Y    DVH   L D+L
Sbjct: 424 CLWDQAE-QVL-QRALEEFGEPWDLKPGDG------------AFYGPKIDVH---LHDAL 466

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGK-DHYVQMGSYGIGAMRVVAAV 328
                   R  + G I      + LP+     +KG  G  +  V +    +G++  +  V
Sbjct: 467 -------GRPHQCGTI---QLDFQLPLRFDLQYKGQAGVLERPVLIHRAVLGSVERMLGV 516

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +  S+ GK   WP  ++PF++ +I + A  ++  R+A +++ A  + + CD+   D G  
Sbjct: 517 LAESYGGK---WPLWLSPFQVVVIPVGAEQEEYAREAQQRLQA--AGLVCDLD-ADSGLT 570

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 571 LSRRVRRAQLAHYNFQFVVGQKEQSKKTVNIRTR 604


>gi|332297469|ref|YP_004439391.1| threonyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332180572|gb|AEE16260.1| threonyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 583

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I + S G   W P G      +   +R +    G +E+  P +    LW  SG +  Y K
Sbjct: 196 IDEDSPGQIFWHPNGWTIYRILEDYVRTKIKADGYVEVKTPFVMPQSLWERSGHWAKY-K 254

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +     +IF+  I+SY++LP    +     R+E      G+M
Sbjct: 255 ENMFITESEKRIFALKPMNCPGHIEIFKQRIRSYKDLPLRMAEFGSCTRNEASGALHGIM 314

Query: 151 RSREFLMKDAYSF 163
           R R F+  DA+ F
Sbjct: 315 RVRGFVQDDAHIF 327


>gi|326409092|gb|ADZ66157.1| threonyl-tRNA synthetase [Brucella melitensis M28]
          Length = 660

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 237 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 293 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 352

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 353 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLQI 411

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 412 NDHILSVYKDFGFEEITIKLSTRPEKRVGSD 442


>gi|148508028|gb|ABQ75826.1| threonine--tRNA ligase [uncultured haloarchaeon]
          Length = 643

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 3/156 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+K L+ +++         G   +  P L   +LW  SG Y++Y  +M  L 
Sbjct: 262 GLPLYHPNGKKILNELSSYAESLNVDAGYEPVETPHLFKTELWKVSGHYENYVDDMF-LL 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D +D      P +      IF     SYR+LP  +Y+    +R E R    G+ R   F 
Sbjct: 321 DVSDDEYGLKPMNCPGHATIFNQQSWSYRDLPVRYYEDGKVYRKEQRGELSGLSRVWAFT 380

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           + D + F  TPE  +    ++  S   + +  GL +
Sbjct: 381 IDDGHLF-CTPEQIEQEVTQVIESIQEVLNTFGLDA 415


>gi|148675292|gb|EDL07239.1| threonyl-tRNA synthetase-like 2, isoform CRA_b [Mus musculus]
          Length = 559

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y 
Sbjct: 170 FFHDLSPGSCFFLPRGAFIYNALMDFIREEYHKRNFTEVLSPNMYNSKLWETSGHWQHYS 229

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M    D         P +      +F    +S+R +P  F    +  R+EL     G+
Sbjct: 230 NNMFTF-DVEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRFADFGVLHRNELSGTLSGL 288

Query: 150 MRSREFLMKDAYSFDLTPE------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            R R F   DA+ F +  +      G  H    ++ ++   F +L L + P         
Sbjct: 289 TRVRRFQQDDAHIFCMVEQIEEEIKGCLHFLQSVYSTFGFSF-QLNLSTRPEH-----FL 342

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G+     I + D  E Q+      ++F  P +    D             A Y    D+ 
Sbjct: 343 GE-----IEIWDEAERQL--QNSLVEFGKPWKINPGDG------------AFYGPKIDI- 382

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             K+ D++    + +   ++    F    +++L   +  K  D K+  V +    +G++ 
Sbjct: 383 --KIKDAIGRYHQCATIQLD----FQLPIRFNLTYVS--KDGDDKNRPVIIHRAILGSVE 434

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK------VGC 377
            + A++  ++ GK   WP  ++P ++ +I +         ACE    ++SK         
Sbjct: 435 RMIAILSENYGGK---WPLWLSPRQVMVIPVGP-------ACENYALQVSKECFEEGFMA 484

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DV  DD    +  +   A L  +   ++VG K   ++ V ++ R   I  ++S+  VI
Sbjct: 485 DVDLDDSC-TLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDNKIHGEISIASVI 541


>gi|70733467|ref|YP_263242.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68347766|gb|AAY95372.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 629

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 76/206 (36%), Gaps = 11/206 (5%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           Y L + Q   RD      KL  +  + H    + G   W   G      +   +R  Q +
Sbjct: 231 YLLRLEQAQQRD----HRKLGQQLDLFHFDDCAPGSVFWHAKGWTLFQELIGYMRRRQEQ 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P +    LW  SG + +Y   M     ++ +     P +      IF    K
Sbjct: 287 AGYQEVNTPDVMDRGLWETSGHWQNYRDHMFTTTTQDQRTFALKPMNCPGAVAIFGHGRK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G++R R F   DA+ F  TP+  +           
Sbjct: 347 SYRDLPLRIAEFGKVHRYEPSGALHGLLRVRHFTQDDAHIF-CTPQQMQSECAATIALVF 405

Query: 183 RIFHRLGLKSIPMRAESGP---IGGD 205
            I+   G   + ++  + P   IG D
Sbjct: 406 DIYKEFGFDQVAVKLSTRPDHRIGSD 431


>gi|297624797|ref|YP_003706231.1| prolyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165977|gb|ADI15688.1| prolyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 484

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++   + TF   + +  +V   S+G+ + R + A+I +  D KG+
Sbjct: 223 GKALQAGTSHYMGDNFARAFNITFNDVNNQQAFVHTTSWGL-SWRFIGALIMTHGDDKGL 281

Query: 339 IWPDSVAPFKISLINI-----KAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQF 392
           I P  +AP ++ ++ I      A          K++A L   G  V  DD  G   G +F
Sbjct: 282 ILPPPLAPHQVVVVPIYRADDDAARAAVLAEVGKLHAALKDAGVRVKVDDRQGMSPGWKF 341

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              +  G PL++ +G K +      +  RL+G +  + L
Sbjct: 342 NEWEQKGVPLRLELGPKDLEAGAALLADRLSGEKRPVKL 380



 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +   I+SYR+LP  + Q     R ELR R   +R+ EFL ++ ++   T 
Sbjct: 112 PTSETIIGEAYSKWIQSYRDLPLLYNQWCNVLRWELRTR-PFLRTTEFLWQEGHTAHATA 170

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +M   Y     R G   +  R E  P
Sbjct: 171 EEAMAETRQMLEIYAEFAERYGALPV-FRGEKTP 203


>gi|295093898|emb|CBK82989.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Coprococcus sp.
           ART55/1]
          Length = 587

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/405 (19%), Positives = 150/405 (37%), Gaps = 60/405 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  +LP G      +   I+ ++ + G + +  P + + +L+  SG +D Y   M  
Sbjct: 201 GRGLPMFLPKGYTVWQELENYIKRKERKLGYLHVMTPCVGTVNLYKTSGHWDHYKDNMFP 260

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             +   ++ +  P +      I+ + + SY++LP    +I   FR E      G+ R R 
Sbjct: 261 AMEMEGESFVLRPMNCPHHMMIYANKMHSYKDLPIRIAEIAHDFRFEASGTLKGIERGRH 320

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D++ F +TP+  +  +                             G +   F    
Sbjct: 321 FCQNDSHIF-VTPDQIEEEF----------------------------AGVVKLIFDTYK 351

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D G T   C     D   P +   + D        E W     A   V ++   D   E 
Sbjct: 352 DFGITDYRCVLSLRD---PEDKVKYHDDD------EMWNKAENALRKVLDDIGIDYTEEI 402

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLPMSATFKGADG---KDHYVQMGSYGIG 320
              +  G +        VG+ +   T    + LP     K  D    K   V +    +G
Sbjct: 403 GEAAFYGPKLDVNVKPAVGNEYTLSTCQLDFCLPAKFDLKYIDKDGEKKTPVVLHRAILG 462

Query: 321 AM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           ++ R +A ++E +   KG + P  +AP ++ ++ +K  ++       K+   L  +   V
Sbjct: 463 SLDRFMAYILEET---KGNL-PTWLAPVQVRVMPVKTDNEDLMAYAHKVVDALDAIDVRV 518

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             DD  E++G +     +   P  +++G  F       + +RL G
Sbjct: 519 ELDDRAEKLGYRMREGQVQKVPYLLVIG--FNEAENGTVSYRLHG 561


>gi|323337178|gb|EGA78432.1| Ths1p [Saccharomyces cerevisiae Vin13]
          Length = 734

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 341 LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYK 400

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 401 ENMFTF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 459

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 460 TRVRRFQQDDAHIF 473


>gi|317121664|ref|YP_004101667.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591644|gb|ADU50940.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 644

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G   W P G      +    RE Q R G  E+  P +   DLW  SG ++ Y + M  
Sbjct: 265 APGYAFWHPKGATVYGLLERFSRELQARYGYQEVRTPEILKVDLWHRSGHWEHYRENMF- 323

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L +R        P +      I+RS I+SYR+LP    +     R E      G++R R 
Sbjct: 324 LIEREGAQFGVKPMNCPGHCLIYRSRIRSYRDLPLRLAEYGRLARFERSGTLHGLLRVRG 383

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 384 FEQDDAHLF 392


>gi|50284855|ref|XP_444855.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524157|emb|CAG57748.1| unnamed protein product [Candida glabrata]
          Length = 673

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 129/338 (38%), Gaps = 70/338 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E V+   +   I+SYR+LP    Q     R E +     +R+REFL ++ ++  L  
Sbjct: 276 PTSETVIYPYYAKWIQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAFLDQ 335

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y  I++   L ++P                +V     E + F    F
Sbjct: 336 DDAEKEVLQVLDFYAGIYNE--LLAVP----------------VVKGKKTEKEKFAGAAF 377

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              + VE +                  +PE    + RGI+    
Sbjct: 378 ------------------TTTVEGY------------------IPE----TGRGIQGATS 397

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +   G +H   Y    S+G+ + R +  ++ +  D KG++ P  V
Sbjct: 398 HHLGQNFSKMFNLSVENPLGPEHPKVYAYQNSWGL-STRTLGVMVMTHSDNKGLVVPPRV 456

Query: 345 A-------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           A       P  I+        +   DA + +  RL K     F D +     G +F+  +
Sbjct: 457 AQHQAVVIPVGITKKTTDEQRKSIHDAAKNVEDRLLKASVRAFGDYNDNYTPGWKFSQYE 516

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G PL+V +G K +   +V +  R    +  + L+E+
Sbjct: 517 LKGIPLRVELGPKDIEQGQVVVVRRNDSRKYVVKLDEL 554


>gi|82947575|dbj|BAE52439.1| Prolyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 471

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 100/258 (38%), Gaps = 61/258 (23%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ D F   I+SYR+LP    Q     R E+RPR   +R+ EFL ++ 
Sbjct: 87  EEPLVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWEMRPRI-FLRTAEFLWQEG 145

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     KM    L ++  +  + + M      +G   +HE           
Sbjct: 146 HTAHATAEEAMDETLKM----LEVYRVMAEEVLAMPV---IVGEKPAHE----------- 187

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                    FP        D   S+ ++++   A  A TS                    
Sbjct: 188 --------RFP------GADKTYSIEAMMQDGKALQAGTS-------------------- 213

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                   + G  +S   +  ++ A G + +    S+G+ + R++  VI S  D  G+  
Sbjct: 214 -------HFLGQHFSKAQNIRYQTAQGGEEFCYTTSWGV-STRLIGGVIMSHADDNGLRV 265

Query: 341 PDSVAPFKISLINIKAHD 358
           P  +AP +I  + I   D
Sbjct: 266 PPRIAPKQIVFVPITRAD 283


>gi|188024082|ref|ZP_02996824.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188019126|gb|EDU57166.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
          Length = 472

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y G  ++      F+G D + HYV   S G+   R++ A+I    D +G+I P  +A  +
Sbjct: 232 YLGQFFAKAYDIKFQGQDNQMHYVHQMSAGLST-RIIGALIMVHADDQGLILPPDIAFNQ 290

Query: 349 ISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           I++++I A+ +       E+I   LS     +F D   + +G + A  ++ G P+ ++VG
Sbjct: 291 IAILSIFANKNPQLLTISEQIRNELSDYR--LFEDHSDKGVGYKLAQQEIEGTPICILVG 348

Query: 408 SKFVSDSKVEIKHRLTGIREDMSL 431
            K +++ +V +  R T  + +++L
Sbjct: 349 VKELANQQVVLVRRDTHEKINVNL 372


>gi|254382003|ref|ZP_04997365.1| prolyl-tRNA synthetase 2 [Streptomyces sp. Mg1]
 gi|194340910|gb|EDX21876.1| prolyl-tRNA synthetase 2 [Streptomyces sp. Mg1]
          Length = 470

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 133/338 (39%), Gaps = 65/338 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ D F   ++SYR+LP    Q     R E       MR R FL    
Sbjct: 103 EEPVVVRPTSETIINDYFSKWVQSYRDLPLLINQWANVVRWE-------MRPRVFLRTSE 155

Query: 161 YSFDLTPEG-SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           +   L  EG + H+  +    Y    H                                T
Sbjct: 156 F---LWQEGHTAHATYEDARDYAARIH--------------------------------T 180

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            V+   DFM            +++ ++ ++ + TA       ++   L     E      
Sbjct: 181 DVYG--DFMT-----------NVLGIDVVLGRKTAKERFAGAINTLTL-----EGMMGDG 222

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + +++G     GT ++   +  +   +GK   V   S+G+ + R+V  +I S  D  G+ 
Sbjct: 223 KALQLGTSHELGTNFAKAFNTQYLSKEGKQELVWQTSWGV-STRMVGGLIMSHGDDNGLR 281

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLL 398
            P  +A  ++ ++ IK  + V +    ++ A+L   G  V  DD +    G +    +L 
Sbjct: 282 VPPRLAHVQVVVMAIKGDEAVAK--VRELGAQLKAAGLRVQVDDRVDTPFGRRAVDWELK 339

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P+++ +G + + +    +  R+ G +E + +  +++
Sbjct: 340 GVPVRIEIGPRDLENGTAMLARRIPGGKEAVQISALLD 377


>gi|225852573|ref|YP_002732806.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256263936|ref|ZP_05466468.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|254783511|sp|C0RJ44|SYT_BRUMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225640938|gb|ACO00852.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|263094080|gb|EEZ18002.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
          Length = 658

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLQI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDHILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|238591358|ref|XP_002392585.1| hypothetical protein MPER_07812 [Moniliophthora perniciosa FA553]
 gi|215458845|gb|EEB93515.1| hypothetical protein MPER_07812 [Moniliophthora perniciosa FA553]
          Length = 210

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G +  +N+  ++R E  + G  E+  P + +  LW  SG + +Y   M  
Sbjct: 32  SPGSCFWLPHGTRIYNNLVELLRSEYWKRGYQEVISPNMFNTKLWETSGHWQNYTDGMFV 91

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L    +K  +  P +      IF S  +SY+ LP    +  +  R+E      G+ R R 
Sbjct: 92  LDVEKEKWAL-KPMNCPGHCIIFDSRDRSYKELPIRMAEFGIIHRNEASGALTGLTRVRR 150

Query: 155 FLMKDAYSF 163
           F+  D + F
Sbjct: 151 FVQDDTHVF 159


>gi|21231898|ref|NP_637815.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767974|ref|YP_242736.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991100|ref|YP_001903110.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|25453287|sp|Q8P7Z2|SYT_XANCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81306049|sp|Q4UW57|SYT_XANC8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229558465|sp|B0RRG9|SYT_XANCB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21113622|gb|AAM41739.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573306|gb|AAY48716.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732860|emb|CAP51054.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 636

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 258 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 317

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 318 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 377 RVRGFTQDDGHVFCLESQ-IEAEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 435

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 436 WDKAEAALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 472

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 473 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDEHSQ-------KKHPVMLHRAIVGSMERFIG 525

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        D+  K    L+  G  V  D   E+
Sbjct: 526 ILIEHHAGA---FPAWLAPVQVVVANITDAQAEYVDSVRKT---LANQGFRVSADLRNEK 579

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 580 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 613


>gi|300691315|ref|YP_003752310.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299078375|emb|CBJ51025.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 635

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    V   +R   +  G  E+  P +    LW  SG + +Y K
Sbjct: 255 LQEEAPGMVFWHPKGWEIWQAVEQYMRGRLSNAGYREVRTPQVMDRTLWEHSGHWQNY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +      IF   ++SYR+LP    +     R+E      G+M
Sbjct: 314 ENMFVTESEKREYAIKPMNCPGHVQIFNHGLRSYRDLPLRLAEFGACHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSF 163
           R R F+  DA+ F
Sbjct: 374 RVRGFVQDDAHIF 386


>gi|332158991|ref|YP_004424270.1| threonyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034454|gb|AEC52266.1| threonyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 625

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 134/331 (40%), Gaps = 50/331 (15%)

Query: 117 IFRSHIKSYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           I +  + SY++LP   Y++ +  FR E R    G+ R R F M D ++     E +K  +
Sbjct: 304 ISKDAVISYKHLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDLEQAKEEF 363

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            K F   + +   +GL                        D  E  +  ++DF       
Sbjct: 364 KKQFKLSMEVLEGVGLTP----------------------DDYEVAIRFTEDFW-----K 396

Query: 235 ENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           EN DF      +I    ++E W   +            D+L +   +S   I+V +   F
Sbjct: 397 ENRDFIIELVKLIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERF 456

Query: 291 GTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESS----HDGKGIIWPDSV 344
           G KY           +G++ Y + +     GA+ RV+ A++E        GK  + P  +
Sbjct: 457 GIKYY--------DENGEERYPLILHCSPSGAIERVMYAILEKQAKLMQQGKKPMLPVWL 508

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ +I + ++D +  D    +  +L      V  DD  E++  +   A+    P  V
Sbjct: 509 SPIQVRVIPV-SNDFL--DYALYVAGKLEGAKIRVDVDDEDERLNKKIRRAEKEWIPYIV 565

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +VG+K      + ++ R  G + +  +EE+I
Sbjct: 566 VVGAKEKETGTIMVRRREDGKQYETRIEELI 596


>gi|299066586|emb|CBJ37776.1| threonine tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 635

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    V   +R      G  E+  P +    LW  SG +++Y K
Sbjct: 255 LQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAGAGYSEVRTPQVMDRGLWERSGHWENY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +      IF   ++SYR+LP    +     R+E      G+M
Sbjct: 314 ENMFVTESEKREYAIKPMNCPGHVQIFNHGLRSYRDLPLRLAEFGACHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSF 163
           R R F+  DA+ F
Sbjct: 374 RVRGFVQDDAHIF 386


>gi|115475758|ref|NP_001061475.1| Os08g0295300 [Oryza sativa Japonica Group]
 gi|38175524|dbj|BAD01219.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|38175707|dbj|BAD01414.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113623444|dbj|BAF23389.1| Os08g0295300 [Oryza sativa Japonica Group]
 gi|215687347|dbj|BAG91912.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 745

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 178/441 (40%), Gaps = 47/441 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 336 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 391

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y KE + + +   +     P +      +F
Sbjct: 392 QQYRDRGYQEVLSPNIYNMQLWETSGHAANY-KENMFVFEIEKQEFGLKPMNCPGHCLMF 450

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F    +        +
Sbjct: 451 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRESQIKDEVKAVL 510

Query: 178 -FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            F++Y  ++   G K  + +        GD     I   +  E Q+  ++   +F  P +
Sbjct: 511 DFINY--VYEIFGFKYELELSTRPEKYLGD-----IETWNKAEQQL--TEALNEFGKPWQ 561

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             + D             A Y    D+    +FD+L    + +   ++      F   YS
Sbjct: 562 INEGDG------------AFYGPKIDI---GVFDALKRKFQCATLQLDFQLPLRFKLTYS 606

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               A        +  V +    +G++  + A++   ++GK   WP  ++P +  + +I 
Sbjct: 607 AEDEAKL------ERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSIS 657

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           ++     +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +
Sbjct: 658 SNSV---EYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQ 714

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           V ++ R       +S++++I 
Sbjct: 715 VSVRVRDKAELATVSIDDIIT 735


>gi|145219006|ref|YP_001129715.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Prosthecochloris vibrioformis DSM 265]
 gi|189083618|sp|A4SCK4|SYT_PROVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145205170|gb|ABP36213.1| Ser-tRNA(Thr) hydrolase [Chlorobium phaeovibrioides DSM 265]
          Length = 666

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      + + ++EEQ R G + +  P + + DL+  SG Y  Y       L
Sbjct: 273 GLPVWLPKGAIIRQELESFLKEEQRRRGYLPVYTPHIGNIDLYKRSGHYPYYSDSQFPPL 332

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D   KA  Y   P +      I+ S ++SYR+LP    +    +R E      G++R
Sbjct: 333 TYHDEEGKAEQYLLKPMNCPHHHLIYSSKMRSYRDLPVRLAEFGTVYRHEQSGELNGLVR 392

Query: 152 SREFLMKDAYSF 163
           +R F   D++ +
Sbjct: 393 ARGFTQDDSHIY 404


>gi|297620271|ref|YP_003708408.1| Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375572|gb|ADI37402.1| Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 642

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/443 (20%), Positives = 159/443 (35%), Gaps = 60/443 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLML------RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +Y   + +   RD  +   KL L        GM   H KG+  W  L           +R
Sbjct: 227 EYLHQMEEAKKRDHRVIGSKLDLFSFKEEAAGMPFIHPKGMTVWTELTN--------YLR 278

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E       +E+  P + S  LW  SG + +Y + M   ++  D      P +       +
Sbjct: 279 ECLGSANYVEIKTPIMLSRGLWETSGHWFNYRENMF-TSEIEDHDYAIKPMNCPGCMLYY 337

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +SH+ SYR LP    +I    R E      G+ R R F   DA+ F + P   +     +
Sbjct: 338 KSHVHSYRELPLRVAEIGNVHRYEPSGALSGLFRVRSFHQDDAHIF-MKPSDIEGEILSL 396

Query: 178 FVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              + +++   GL     +  R E G IG D   E      T   +    K   D+ I  
Sbjct: 397 LNLFEKLYSTFGLSYHLELSTRPEKGTIGTDEEWE----QATAGLKNALDKWGHDYKINE 452

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
            +  F                Y    D H   + D++    +     +++     F  +Y
Sbjct: 453 GDGAF----------------YGPKIDFH---IRDAINRTWQCGTIQLDMALPQRFALEY 493

Query: 295 SLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +         +DG+ H   M    I G++     ++     GK  +W   ++P +  ++ 
Sbjct: 494 T--------ASDGERHRPVMLHRAIFGSIERFMGILIEHFAGKFPLW---ISPLQARILT 542

Query: 354 IK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +   H+    +  +K    L + G  V  D  GE +  +   A L      + VG K + 
Sbjct: 543 VADRHEPYAHELMQK----LKQQGFRVDIDATGESVSKKVRTAQLTQINYILTVGDKEME 598

Query: 413 DSKVEIKHRLTGIREDMSLEEVI 435
              + ++ R   +  ++ LE  I
Sbjct: 599 HKTLNLRTRDNVVHGEIDLEAFI 621


>gi|149918430|ref|ZP_01906920.1| prolyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
 gi|149820730|gb|EDM80140.1| prolyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
          Length = 517

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 125/329 (37%), Gaps = 75/329 (22%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   F   I S+R+LP    Q     R ELR R   +R+ EFL ++ ++   T 
Sbjct: 130 PTSETIIGHFFAKWIDSHRDLPLKINQWANVMRWELRTRM-FLRTTEFLWQEGHTAHAT- 187

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 + +     L++ H               + GD + E + +  T           
Sbjct: 188 ------HEEAIEETLQMLH---------------VYGDFAEEVLAVPVTR---------- 216

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               I + +  F   +    I E W                           + ++ G  
Sbjct: 217 ---GIKTASERFAGALETYCI-EAWMQ-----------------------DGKALQAGTS 249

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G  +       F+   G   +V   S+G+ + R++  ++ +  D  G++ P  VAP 
Sbjct: 250 HDLGQNFGKAFDVKFQNEAGDLEHVWQTSWGV-STRLIGGLVMTHSDDDGLVLPPRVAPI 308

Query: 348 KISLINI--KAHD-QVCRDACEKIYARLSKVG-----------CDVFWDDMGEQIGSQFA 393
             ++I I  KAH+ +   +A E++  +LS +             +V  DD   + G++F 
Sbjct: 309 HAAIIPIFRKAHEKERVMEAAERLKEQLSAIDIAPERARYRDFLEVVIDDRDMRPGAKFY 368

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +  G P+++ +G K +   +V +K R+
Sbjct: 369 DWERRGVPMRIELGPKDLDKGQVCMKMRV 397


>gi|162319780|ref|YP_422998.2| prolyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|114152208|sp|Q2W136|SYP_MAGMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 500

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 100/258 (38%), Gaps = 61/258 (23%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ D F   I+SYR+LP    Q     R E+RPR   +R+ EFL ++ 
Sbjct: 116 EEPLVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWEMRPRI-FLRTAEFLWQEG 174

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     KM    L ++  +  + + M      +G   +HE           
Sbjct: 175 HTAHATAEEAMDETLKM----LEVYRVMAEEVLAMPV---IVGEKPAHE----------- 216

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                    FP        D   S+ ++++   A  A TS                    
Sbjct: 217 --------RFP------GADKTYSIEAMMQDGKALQAGTS-------------------- 242

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                   + G  +S   +  ++ A G + +    S+G+ + R++  VI S  D  G+  
Sbjct: 243 -------HFLGQHFSKAQNIRYQTAQGGEEFCYTTSWGV-STRLIGGVIMSHADDNGLRV 294

Query: 341 PDSVAPFKISLINIKAHD 358
           P  +AP +I  + I   D
Sbjct: 295 PPRIAPKQIVFVPITRAD 312


>gi|254580109|ref|XP_002496040.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
 gi|238938931|emb|CAR27107.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
          Length = 716

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M ++ S G   WLP G +    +  +++ E  + G  E+  P + ++ LW  SG +  Y 
Sbjct: 321 MFNEMSPGSCFWLPHGTRIYSTLVDLLKNEYRKRGYEEVITPNMYNSKLWETSGHWGHYK 380

Query: 91  KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           + M       +   +YG  P +      +F+S  +SYR LP+      +  R+E      
Sbjct: 381 ENMFTFEVEKE---MYGLKPMNCPGHALMFKSRERSYRELPWRVADFGVIHRNEFSGALT 437

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R R F   DA+ F
Sbjct: 438 GLTRVRRFQQDDAHIF 453


>gi|218132749|ref|ZP_03461553.1| hypothetical protein BACPEC_00610 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992475|gb|EEC58478.1| hypothetical protein BACPEC_00610 [Bacteroides pectinophilus ATCC
           43243]
          Length = 477

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   D K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFGIQYTDKDNKLKYVHQTSWGM-TTRLIGALIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ +        D   +I   LS     V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPRIAPVQVCIVPVMQKKPGVLDKAFEIKEVLSNFRVKV--DDSDKSPGWKFSEQEMR 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ +G + +  ++  +  R  G +  +SL+E+
Sbjct: 342 GIPLRIEMGPRDIEANQAVLVRRDNGEKITVSLDEI 377



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 10/137 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSY 89
           M +   KG   + P G    +N+   +      TG   + +P  +  + L  E    + +
Sbjct: 32  MCYSSVKGCMIFKPDGYAIWENIQHELDRRFKATGVKNVYMPMFIPESLLQREKDHVEGF 91

Query: 90  GKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDEL 143
             E+  + +       + M   PT E +  D +++ I+SYR+LP    Q    +++  E 
Sbjct: 92  APEVAWVTEGGLQPLQEKMCVRPTSETLFCDYYKNEIQSYRDLPQLCNQWCSVVRWEKET 151

Query: 144 RPRFGVMRSREFLMKDA 160
           RP    +RSREFL ++ 
Sbjct: 152 RP---FLRSREFLWQEG 165


>gi|225550771|ref|ZP_03771720.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379925|gb|EEH02287.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 472

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y G  ++      F+G D + HYV   S G+   R++ A+I    D +G+I P  +A  +
Sbjct: 232 YLGQFFAKAYDIKFQGQDNQMHYVHQMSAGLST-RIIGALIMVHADDQGLILPPDIAFNQ 290

Query: 349 ISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           I++++I A+ +       E+I   LS     +F D   + +G + A  ++ G P+ ++VG
Sbjct: 291 IAILSIFANKNPQLLTISEQIRNELSDYR--LFEDHSDKGVGYKLAQQEIEGTPICILVG 348

Query: 408 SKFVSDSKVEIKHRLTGIREDMSL 431
            K +++ +V +  R T  + +++L
Sbjct: 349 VKELANQQVVLVRRDTHEKINVNL 372


>gi|124805808|ref|XP_001350543.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium
           falciparum 3D7]
 gi|74862875|sp|Q8I5R7|SYP_PLAF7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23496667|gb|AAN36223.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium
           falciparum 3D7]
          Length = 746

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + R I+     Y GT ++      F+  +    YV   S+G    R +  +I +  D KG
Sbjct: 470 NGRAIQAATSHYLGTNFAKMFKIEFEDENEVKQYVHQTSWGC-TTRSIGIMIMTHGDDKG 528

Query: 338 IIWPDSVAPFKISLINI--KAHDQ-----VCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           ++ P +V+ +K+ ++ I  K  D+      C+D  EKI    +++ C V+ D      G 
Sbjct: 529 LVLPPNVSKYKVVIVPIFYKTTDENAIHSYCKDI-EKILKN-AQINC-VYDDRASYSPGY 585

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +F   +L G P+++ VG K + ++   I  R    + ++  E V+
Sbjct: 586 KFNHWELRGIPIRIEVGPKDLQNNSCVIVRRDNNEKCNVKKESVL 630



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           PT E +M  +F   I+SYR+LP    Q     R E +     +R+REFL ++ ++
Sbjct: 358 PTSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFKQPTPFIRTREFLWQEGHT 412


>gi|17546296|ref|NP_519698.1| threonyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|22654118|sp|Q8XZ29|SYT_RALSO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17428593|emb|CAD15279.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 635

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    V   +R      G  E+  P +    LW  SG +++Y K
Sbjct: 255 LQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAGAGYSEVRTPQVMDRGLWERSGHWENY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +      IF   ++SYR+LP    +     R+E      G+M
Sbjct: 314 ENMFVTESEKREYAIKPMNCPGHVQIFNHGLRSYRDLPLRLAEFGACHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSF 163
           R R F+  DA+ F
Sbjct: 374 RVRGFVQDDAHIF 386


>gi|242309942|ref|ZP_04809097.1| threonyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523239|gb|EEQ63105.1| threonyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 605

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +   N+  ++ +   + G   +  P +  + +W  SG Y +YG+ M    
Sbjct: 231 GLPIWLPKGSRLRRNIENLLTKALIQRGYEPVRGPEILKSAVWKTSGHYANYGENMYFTT 290

Query: 98  DRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 + YG  P +      +++S ++SYR LP  FY+  +  R E      G++R RE
Sbjct: 291 ---IDGVEYGIKPMNCVGHIKVYQSALRSYRELPLRFYEYGVVHRHEKSGVLHGLLRVRE 347

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 348 FTQDDAHIF 356


>gi|297191796|ref|ZP_06909194.1| prolyl-tRNA synthetase 2 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721687|gb|EDY65595.1| prolyl-tRNA synthetase 2 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 470

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 137/347 (39%), Gaps = 72/347 (20%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++ D F   ++SYR+LP    Q     R EL      
Sbjct: 99  GKEL-------EEPVVVRPTSETIINDYFSKWVQSYRDLPLLINQWANVVRWEL------ 145

Query: 150 MRSREFLMKDAYSFDLTPEG-SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            R R FL    +   L  EG + H+  +    Y    HR                 D+  
Sbjct: 146 -RPRVFLRTTEF---LWQEGHTAHATYEDARDYAARIHR-----------------DVYA 184

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +F+V                            +++ ++ ++ + T        ++   L 
Sbjct: 185 DFMV----------------------------NVLGIDVVLGRKTPRERFAGAINTLTLE 216

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + + K      +++G     GT ++   + ++   DG+   V   S+G+ + R+V  +
Sbjct: 217 GMMGDGK-----ALQMGTSHELGTNFAKAFNTSYLSKDGQQELVWQTSWGV-STRMVGGL 270

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQ 387
           I S  D  G+  P  +A  ++ ++ IK  + V +    ++   L+  G  V  DD +   
Sbjct: 271 IMSHGDDNGLRVPPRLAAVQVVVMAIKGDEAVAK--VHEVGRLLTAAGLRVHVDDRVDTP 328

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +    +L G P+++ +G + +      +  R+ G +E +SL+ +
Sbjct: 329 FGRRAVDWELKGVPVRIEIGPRDLEAGTAMLARRIPGGKEPVSLDSL 375


>gi|288918333|ref|ZP_06412686.1| prolyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288350228|gb|EFC84452.1| prolyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 471

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 3/146 (2%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++      F GADG  H     S+G  + R++  +I +  D  G+  P ++AP ++
Sbjct: 233 LGQNFARAFDIDFLGADGGRHLAWTTSWG-SSTRMIGGLIMAHGDDNGLRIPPALAPTQV 291

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGS 408
            ++ ++  + V   A E I   L+  G  V  D   G   G +   A+L G P++V +G 
Sbjct: 292 IVLPVRDDEAVVAKARE-ITDALTAAGVRVSLDARPGLSFGRRVTDAELKGIPVRVEIGP 350

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEV 434
           + ++   V +  R TG +  + L +V
Sbjct: 351 RDLAAGNVTVARRDTGEKHPVPLTDV 376



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           ++  PT E V+ +      +SYR+LP    Q     R ELRPR   +R+ EFL ++ ++
Sbjct: 106 VVVRPTSETVIGEYMAKWTQSYRDLPLLLNQWANVVRWELRPRL-FLRTSEFLWQEGHT 163


>gi|185178982|ref|ZP_02964737.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188518276|ref|ZP_03003799.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524364|ref|ZP_03004396.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867791|ref|ZP_03079791.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273755|ref|ZP_03206289.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554280|ref|YP_002284879.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225551615|ref|ZP_03772561.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|259511630|sp|B5ZBT9|SYP_UREU1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|184209266|gb|EDU06309.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188998019|gb|EDU67116.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659957|gb|EDX53337.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660488|gb|EDX53745.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249510|gb|EDY74292.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209541781|gb|ACI60010.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379430|gb|EEH01795.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 472

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y G  ++      F+G D + HYV   S G+   R++ A+I    D +G+I P  +A  +
Sbjct: 232 YLGQFFAKAYDIKFQGQDNQMHYVHQMSAGLST-RIIGALIMVHADDQGLILPPDIAFNQ 290

Query: 349 ISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           I++++I A+ +       E+I   LS     +F D   + +G + A  ++ G P+ ++VG
Sbjct: 291 IAILSIFANKNPQLLTISEQIRNELSDYR--LFEDHSDKGVGYKLAQQEIEGTPICILVG 348

Query: 408 SKFVSDSKVEIKHRLTGIREDMSL 431
            K +++ +V +  R T  + +++L
Sbjct: 349 VKELANQQVVLVRRDTHEKINVNL 372


>gi|171920903|ref|ZP_02932054.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|171903119|gb|EDT49408.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
          Length = 472

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 76/144 (52%), Gaps = 4/144 (2%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y G  ++      F+G D + HYV   S G+ + R++ A+I    D +G+I P  +A  +
Sbjct: 232 YLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMVHADDQGLILPPDIAFNQ 290

Query: 349 ISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           I++++I A+ +       E+I   LS     +F D   + +G + A  ++ G P+ ++VG
Sbjct: 291 IAILSIFANKNPQLLTISEQIRNELSDYR--LFEDHSDKGVGYKLAQQEIEGTPICILVG 348

Query: 408 SKFVSDSKVEIKHRLTGIREDMSL 431
            K +++ +V +  R T  + +++L
Sbjct: 349 VKELANQQVVLVRRDTHEKINVNL 372


>gi|169617674|ref|XP_001802251.1| hypothetical protein SNOG_12019 [Phaeosphaeria nodorum SN15]
 gi|111059311|gb|EAT80431.1| hypothetical protein SNOG_12019 [Phaeosphaeria nodorum SN15]
          Length = 779

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP GQ   + + A +REE    G  E+  P + S+ LW  SG +  Y 
Sbjct: 343 FFHEASPGSPFFLPHGQIIFNTLQAFLREEYWNRGYQEVQSPNMYSSALWKVSGHWQHYH 402

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           ++M       +K  +  P +      IF+   +SYR LP       +  R+E      G+
Sbjct: 403 EDMFTFDVEKEKWGL-KPMNCPGHALIFKHRERSYRELPIRMADFGVLHRNEASGALTGL 461

Query: 150 MRSREFLMKDAYSF 163
            R R F   D + F
Sbjct: 462 TRVRRFQQDDTHIF 475


>gi|325090828|gb|EGC44138.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 578

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q+S G   +LP G   L+ + + +R +  + G +E+  P++    LW  SG + +Y  +M
Sbjct: 105 QYSPGSPLFLPNGTHILNKLTSFLRAQYTKYGFLEVLTPSIYKKSLWKVSGHWQNYKDDM 164

Query: 94  LRLADRN-------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             +  RN             D++    P +      +F+S   SYR LP  +       R
Sbjct: 165 YEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHR 224

Query: 141 DELRPRF-GVMRSREFLMKDAYSF 163
           +E+     G+ R R F   D + F
Sbjct: 225 NEISGSLSGLTRVRRFHQDDGHIF 248


>gi|288924947|ref|ZP_06418883.1| threonine--tRNA ligase [Prevotella buccae D17]
 gi|288338137|gb|EFC76487.1| threonine--tRNA ligase [Prevotella buccae D17]
          Length = 673

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 143/408 (35%), Gaps = 65/408 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G +    +  ++R         E+  P +    L+V SG Y  YGK+  +
Sbjct: 262 GKGLPIWLPKGTELRLRLQELLRSMLRPYNYQEVITPGIGGKSLYVTSGHYAHYGKDAFQ 321

Query: 96  L--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                  D+  +  P +     ++F    +SY++LP    +    FR E      G+ R 
Sbjct: 322 PIHTPEEDEEYMLKPMNCPHHCEVFARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRV 381

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F + P+  K  +       L++F+  G  +   +              I 
Sbjct: 382 RTFTQDDAHIF-VRPDQVKAEFETNIDIILKVFNIFGFDNYEAQ--------------IS 426

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D  + + +   D                       E W     A  +   EK   +  
Sbjct: 427 LRDPNDKEKYIGSD-----------------------EVWEESETAIKEACAEKGLKARV 463

Query: 273 ENKRVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYG 318
           E    +  G +        +G  +  GT    Y+LP      +   D  K   V +    
Sbjct: 464 ELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNSKKTPVMIHRAP 523

Query: 319 IGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G++    AV+     G   +W  PD VA   IS        +   D  + +      VG
Sbjct: 524 FGSLERFTAVLIEHTAGHFPLWLTPDQVAILPIS--------EKYNDYAKSVARYFDSVG 575

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                D+  E+IG +    +L   P  VIVG K  ++  V ++ +  G
Sbjct: 576 VRAIIDERNEKIGRKIRDNELKRVPYMVIVGEKESAEGLVSMRKQGGG 623


>gi|217974767|ref|YP_002359518.1| tRNA synthetase class II [Shewanella baltica OS223]
 gi|217499902|gb|ACK48095.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS223]
          Length = 398

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            + G+  W P G     ++   +R    R G  E++ P     +LW  SG  D + + M 
Sbjct: 19  QAPGMIFWHPNGWVLFRDIQEHMRRVYRRNGFEEVNTPVFMKKELWQTSGHMDMFAENMF 78

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               + N    +  P        +F+  + S+R+LP   ++  L  R+E      G +R+
Sbjct: 79  FGGGKENMDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFGLVHRNESSGSLNGCLRA 138

Query: 153 REFLMKDAYSF 163
           R+F   DA+ F
Sbjct: 139 RQFTQDDAHVF 149


>gi|330723868|gb|AEC46238.1| prolyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 480

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y    +S      FK    +       S+G+ + R++  +I +  D +G+
Sbjct: 221 GKALQSGTSHYLAQNFSKSFDIVFKNDKNEFENPYQTSWGV-STRLIGGLIMTHGDDRGV 279

Query: 339 IWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P  +AP ++ ++ + A  + +     ++I+ +L K+   +  D    Q G + + +++
Sbjct: 280 ILPPKIAPIQVDILELFAIKNPIVSIVAKQIFEKL-KIKFTLRIDSTDNQPGYKASRSEV 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           LG PL++ VG + +  ++V I  R T  +  + +E+V
Sbjct: 339 LGTPLRIEVGPRDLEKNQVAIVRRDTLEKHQVEVEKV 375


>gi|307721910|ref|YP_003893050.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980003|gb|ADN10038.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 602

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WLP G +    + +++ +   + G   +  P +  +DLW+ SG Y +YG+ M    
Sbjct: 228 GFPIWLPAGGRLRARLESLLFKAHRKRGYEPVRGPEMLRSDLWMTSGHYQNYGENMY-FT 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      ++   + SYR+LP  +++  +  R E      G+ R REF 
Sbjct: 287 HIDELEFGVKPMNCVGHIKVYEDELHSYRDLPIKYFEYGVVHRHEASGALHGLFRVREFT 346

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 347 QDDAHIF 353


>gi|294852343|ref|ZP_06793016.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820932|gb|EFG37931.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 683

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 260 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGAGVVFWHAKGWKMFQNLVSYMRRRLDS 315

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 316 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 375

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 376 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 434

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 435 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 465


>gi|190406293|gb|EDV09560.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a]
 gi|259147177|emb|CAY80430.1| Ths1p [Saccharomyces cerevisiae EC1118]
 gi|323333154|gb|EGA74554.1| Ths1p [Saccharomyces cerevisiae AWRI796]
 gi|323354584|gb|EGA86420.1| Ths1p [Saccharomyces cerevisiae VL3]
          Length = 734

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 341 LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYK 400

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 401 ENMFTF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 459

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 460 TRVRRFQQDDAHIF 473


>gi|4619|emb|CAA26666.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 734

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 341 LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYK 400

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 401 ENMFTF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 459

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 460 TRVRRFQQDDAHIF 473


>gi|300722778|ref|YP_003712069.1| threonine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297629286|emb|CBJ89885.1| threonine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 642

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/395 (19%), Positives = 150/395 (37%), Gaps = 44/395 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    +W ++G +++Y +
Sbjct: 256 MQEEAPGMAFWHNDGWTIFRELETFVRTKLKEYQYQEVKGPFMMDRIMWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 NMFTTSSENREYCV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T +      +        ++   G + I ++  + P         
Sbjct: 375 RVRGFTQDDAHIF-CTEDQILQEVSSCIKMIYDVYGTFGFEKIVVKLSTRP--------- 424

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-KLFD 269
                  E ++   K +          D    ++ NSI  ++     A      E  L+D
Sbjct: 425 -------EKRIGTEKQW-----DEAEADLAKALTQNSIEFEYQPGEGAFYGPKIEFTLYD 472

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            L        R  + G +      +SLP  +SA++ G + +    V +    +G++    
Sbjct: 473 CLD-------RAWQCGTV---QLDFSLPARLSASYVGENNERKVPVMIHRAVLGSLERFI 522

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + G    +P  +AP ++ ++NI        +  +++  +L  VG     D   E
Sbjct: 523 GILTEEYAG---FFPTWLAPQQVVVMNITDGQS---NYVQELVKKLQDVGIRAKADLRNE 576

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +IG +     L   P  ++ G K V   KV ++ R
Sbjct: 577 KIGFKIREHTLRRVPYMLVCGDKEVESGKVSVRTR 611


>gi|256273733|gb|EEU08659.1| Ths1p [Saccharomyces cerevisiae JAY291]
          Length = 734

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 341 LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYK 400

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 401 ENMFTF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 459

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 460 TRVRRFQQDDAHIF 473


>gi|14318437|ref|NP_116578.1| Ths1p [Saccharomyces cerevisiae S288c]
 gi|730881|sp|P04801|SYTC_YEAST RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|556869|emb|CAA86092.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae]
 gi|285812573|tpg|DAA08472.1| TPA: Ths1p [Saccharomyces cerevisiae S288c]
          Length = 734

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 341 LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYK 400

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 401 ENMFTF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 459

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 460 TRVRRFQQDDAHIF 473


>gi|299783724|gb|ADJ41722.1| Threonyl-tRNA synthase [Lactobacillus fermentum CECT 5716]
          Length = 601

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/386 (19%), Positives = 150/386 (38%), Gaps = 35/386 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   + +++   G   +  P L + + +  SG +D Y ++M    
Sbjct: 217 GLPYWMPKGSTIRRTIERYVIDKEVGDGYEHVYTPVLMNLNAYKTSGHWDHYREDMFPPM 276

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  ++   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 277 DMGDGELLELRPMNCPSHIQIYKHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREM 336

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + K+    + ++    +     R         LS+      D
Sbjct: 337 TLNDGHTF-VALDQIQDEFAKILKLIMDVYKDFNINDYTFR---------LSYR-----D 381

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T+ + + D M     S      D + L+    E   A Y    D+  +    +L  +
Sbjct: 382 PKNTEKYFANDEMWERSQSMLKAAMDSMGLDYYEAEGEAAFYGPKLDIQTKT---ALGND 438

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           + +S   ++    F    K+ L     + G DGK H   M   G +G M    A +   +
Sbjct: 439 ETMSTIQLD----FMLPEKFDL----HYVGEDGKQHRPIMIHRGVVGTMERFVAYLTEIY 490

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP ++++I +   D+   D  + +             D   E++G +  
Sbjct: 491 KGAFPTW---LAPNQVNIIPVS--DEKHGDYADDLAREFRAAQLRTVVDHRSEKMGYKIR 545

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIK 419
            +     P  ++VG   V++  V ++
Sbjct: 546 ESQTQKVPYTLVVGEDEVANGTVSVR 571


>gi|256159790|ref|ZP_05457533.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255048|ref|ZP_05460584.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261222239|ref|ZP_05936520.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|265998203|ref|ZP_06110760.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|260920823|gb|EEX87476.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|262552671|gb|EEZ08661.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
          Length = 658

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|151943085|gb|EDN61420.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 734

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 341 LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYK 400

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+
Sbjct: 401 ENMFTF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 459

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 460 TRVRRFQQDDAHIF 473


>gi|281411969|ref|YP_003346048.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281373072|gb|ADA66634.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 640

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           +++ G+  +LP G   L+ +    RE     G  E+  P + +  LW  SG +D Y + M
Sbjct: 256 EYAPGMPFFLPKGVVVLNELMRFSRELHRERGYQEIFTPLIMNEQLWKISGHWDHYAENM 315

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               +++++     P +      +++S   SYR+LP  F++     R E      G+MR 
Sbjct: 316 Y-FIEKDEERYAVKPMNCPGHILVYKSRTVSYRDLPLRFFEFGRVHRYERSGVLHGLMRV 374

Query: 153 REFLMKDAYSFDLTPE 168
           R F   DA+ F  TP+
Sbjct: 375 RSFTQDDAHIF-CTPD 389



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 299 SATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           + T+ G D K+H   M    I G++     ++     G    +P  +AP ++++I I   
Sbjct: 491 NVTYIGPDNKEHKAVMIHRAIYGSLERFFGILIEHFAGA---FPTWLAPIQVAVIPISEK 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ 
Sbjct: 548 HN---DGAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKIS 604

Query: 418 IKHRLTGIREDMSLEEVI 435
           ++ R     +D+ LE  +
Sbjct: 605 VRTRTGKEIKDVDLEHFV 622


>gi|164656383|ref|XP_001729319.1| hypothetical protein MGL_3354 [Malassezia globosa CBS 7966]
 gi|159103210|gb|EDP42105.1| hypothetical protein MGL_3354 [Malassezia globosa CBS 7966]
          Length = 723

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/414 (20%), Positives = 162/414 (39%), Gaps = 77/414 (18%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEM--L 94
           G Y   P      +++      E  + G    S P   S+D L  E    + +  E+  +
Sbjct: 244 GCYILKPWSYYVWESIQRFFDAEIKKIGVQNCSFPMFVSSDVLEREKDHVEGFAPEVAWV 303

Query: 95  RLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
             A ++D  K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+
Sbjct: 304 TKAGKSDLEKPVAIRPTSETVMYPYYAKWIQSHRDLPLRLNQWNSVVRWEFKHPQPFLRT 363

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIP-MRAESGPIGGDLSHEF 210
           REFL ++ ++  L  E +      +   Y R++   L L  +P +++E     G L    
Sbjct: 364 REFLWQEGHTAHLHKEQADEEVRYILDLYRRVYEELLALPVVPGVKSEKEKFAGGLYTTT 423

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +                 +  +P+         S +S+ + ++            ++FD 
Sbjct: 424 V-----------------EGYVPTTGRGVQGGTS-HSLGQNFS------------RMFDI 453

Query: 271 LPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ + +   RG   G +F +   + L                   +  IG M +V   
Sbjct: 454 TVQDPKATDETRGKPEGRLFVWQNSWGL------------------STRTIGVMVMVHG- 494

Query: 329 IESSHDGKGIIWPDSVAPFKISLI----------NIK-AHDQVCRDACEKIYARLSKVGC 377
                D KG++ P  V+  ++ L+          ++K A ++ C D  E++  R  +   
Sbjct: 495 -----DDKGLVMPPRVSQVQVVLVPCGLGVKVSQDVKDAVNKTCDDVAEQLRTRGIRAHA 549

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           D+  D+     G +F   +L G PL++ VG K +S+  +    R TG +E ++L
Sbjct: 550 DLR-DNYNP--GFKFNDWELRGVPLRLEVGPKDLSNQSLIAVRRDTGAKESLAL 600


>gi|224534482|ref|ZP_03675058.1| threonine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514159|gb|EEF84477.1| threonine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 581

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/409 (18%), Positives = 157/409 (38%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLVFFHPNGAKIRALIEDFWREEHSKNGYDILFSPHIGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T         ++    + ++ + G  S+     + P   +G D        
Sbjct: 325 QDDAHII-CTHSQVVDEIKEVLRFAIYMWSKFGFNSLKAYLSTKPEKFVGND-------- 375

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           +D   +     +    F +P E            I +   A Y    D+   K+ DSL  
Sbjct: 376 SDWEMSLKVLEEALSGFKVPYE------------IDKGGGAFYGPKIDL---KIVDSLER 420

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
             ++S    +          ++LP   + T+   DGK+    M     +G++     ++ 
Sbjct: 421 EWQMSTVQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGILI 470

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   +W   ++P +  +I +   +    D   K+  +    G  +  D+   ++ +
Sbjct: 471 EHYGGAFPLW---LSPIQAVIIPV---NNAVEDYAIKVLNKFKNEGIRIKLDNTSSRMNA 524

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVI 435
           +         P   I+G +  ++ K+ I+ R    + GI+ D + E ++
Sbjct: 525 KIREYQAKKIPYMFIIGEREATEEKISIRTRTNEQINGIKLDEAFEFIL 573


>gi|291542490|emb|CBL15600.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           bromii L2-63]
          Length = 648

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 162/413 (39%), Gaps = 52/413 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   LP G + +  +   + + +   G +    P L   DL+  SG +D Y   M  L
Sbjct: 262 QGLPILLPKGARVVQLLQRWVEDVEQSKGCLLTKTPLLAKRDLYKISGHWDHYLDGMFVL 321

Query: 97  ADRND---KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
            D +D   +     P        ++ +  +SYR+LP    +    FR+E      G++R 
Sbjct: 322 GDPHDEEKECFALRPMTCPFQYQVYLNKQRSYRDLPMRLTETSTLFRNEASGEMHGLIRV 381

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG-LKSIPMR-AESGPIGGDLSHEF 210
           R+F + + + + L P+  +  +             +G L++   R ++  P   +  +E 
Sbjct: 382 RQFTISEGH-YILRPDQLEQEFKGCLELAKYFLDTVGLLENCTFRFSQWDPENKNNKYEG 440

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               +  E      K  +D      + D D  I ++       A Y    D+  + +F  
Sbjct: 441 T--KEQWEESQAVMKTILD------DLDVDYEIGIDE-----AAFYGPKLDIQYKNVF-- 485

Query: 271 LPENKRVSARGIEVGHIFY--FGTKYSLPMSATFKGADGKD------HYVQMGSYGIGAM 322
               K  +   I++  +    FG  Y           DG+       H   +G +     
Sbjct: 486 ---GKEDTIVTIQIDMLLAERFGMYYI--------DKDGQKKLPYIIHRTSLGCFE---- 530

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R +A +IE    G   +W   +AP +I L+ IK  +    +  + I  RL+ +G  V  D
Sbjct: 531 RTLAYMIE-RFAGVMPLW---LAPEQIRLLPIKEGNV---EYAQGIADRLTSLGMRVTVD 583

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              E IG +   A L   P  +++G   ++ S V ++ R  G   +M ++E +
Sbjct: 584 SRDENIGPKIKAARLERIPYILVIGDNEMNSSTVTVRSRKRGEIPNMPVDEFV 636


>gi|254719143|ref|ZP_05180954.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984137|ref|ZP_06096872.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838428|ref|ZP_07471273.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662729|gb|EEZ32990.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406568|gb|EFM62802.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 658

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|239831910|ref|ZP_04680239.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824177|gb|EEQ95745.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 674

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 251 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 306

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++    D  D   ++   P +      IF
Sbjct: 307 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHVQIF 366

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 367 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 425

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 426 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 456


>gi|255710799|ref|XP_002551683.1| KLTH0A05192p [Lachancea thermotolerans]
 gi|238933060|emb|CAR21241.1| KLTH0A05192p [Lachancea thermotolerans]
          Length = 740

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            ++ S G   WLP G +  +N+  ++R E  + G  E+  P + ++ LW  SG + +Y +
Sbjct: 347 FNEMSPGSCFWLPHGTRIYNNLVDLMRAEYRKRGFDEVITPNMYNSKLWETSGHWGNYKE 406

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F+S  +SY+ LP+      +  R+E      G+ 
Sbjct: 407 NMFTF-EVEKETFGLKPMNCPGHCILFKSRERSYKELPWRVADFGVIHRNEFSGALTGLT 465

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 466 RVRRFQQDDAHIF 478


>gi|254569696|ref|XP_002491958.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|238031755|emb|CAY69678.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|328351547|emb|CCA37946.1| threonyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 712

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y +
Sbjct: 322 FNEMSPGSCFWLPHGTRIYNTLTDLLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYKE 381

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F+S  +SYR LP+      +  R+E      G+ 
Sbjct: 382 NMFTF-EVEKETFGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEFSGALSGLT 440

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 441 RVRRFQQDDAHIF 453


>gi|254456038|ref|ZP_05069467.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083040|gb|EDZ60466.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 638

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 4/151 (2%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL     + H  + S G   W   G      +   +R  Q+  G  E++ P 
Sbjct: 238 EAEKRDHRKLGKEMDLFHFREESPGSVFWHEKGWALFQKLINYMRSRQDAAGYREVNTPE 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG ++ YG+ M      ++K     P +      +F   +KSYR+LP    
Sbjct: 298 ILDRQLWEKSGHWEKYGENMYTSETPDEKVFAIKPMNCPGHIQVFNQGLKSYRDLPIRIA 357

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +     R E      G++R R F   DA+ F
Sbjct: 358 EFGKVHRYEPSGALHGLLRVRAFTQDDAHIF 388


>gi|170287992|ref|YP_001738230.1| threonyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|238688803|sp|B1L7W6|SYT_THESQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170175495|gb|ACB08547.1| threonyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 640

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           +++ G+  +LP G   L+ +    RE     G  E+  P + +  LW  SG +D Y + M
Sbjct: 256 EYAPGMPFFLPKGVVVLNELMKFSRELHRERGYQEIFTPLIMNEQLWKISGHWDHYAENM 315

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               +++++     P +      +++S   SYR+LP  F++     R E      G+MR 
Sbjct: 316 Y-FIEKDEERYAVKPMNCPGHILVYKSRTVSYRDLPLRFFEFGRVHRYERSGVLHGLMRV 374

Query: 153 REFLMKDAYSFDLTP 167
           R F   DA+ F  TP
Sbjct: 375 RSFTQDDAHIF-CTP 388



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 299 SATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           + T+ G D K+H   M    I G++     ++     G    +P  +AP ++++I I   
Sbjct: 491 NVTYIGPDNKEHRAVMIHRAIYGSLERFFGILIEHFAGA---FPTWLAPIQVAVIPISEK 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ 
Sbjct: 548 HN---DGAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKIS 604

Query: 418 IKHRLTGIREDMSLEEVI 435
           ++ R     +D+ LE  +
Sbjct: 605 VRTRTGKEIKDVDLEHFV 622


>gi|304373259|ref|YP_003856468.1| Prolyl-tRNA synthetase 2 [Mycoplasma hyorhinis HUB-1]
 gi|304309450|gb|ADM21930.1| Prolyl-tRNA synthetase 2 [Mycoplasma hyorhinis HUB-1]
          Length = 480

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y    +S      FK    +       S+G+ + R++  +I +  D +G+
Sbjct: 221 GKALQSGTSHYLAQNFSKSFDIVFKNDKNEFENPYQTSWGV-STRLIGGLIMTHGDDRGV 279

Query: 339 IWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P  +AP ++ ++ + A  + +     ++I+ +L K+   +  D    Q G + + +++
Sbjct: 280 ILPPKIAPIQVDILELFAIKNPIVSIVTKQIFEKL-KIKFTLRIDSTDNQPGYKASRSEV 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           LG PL++ VG + +  ++V I  R T  +  + +E+V
Sbjct: 339 LGTPLRIEVGPRDLEKNQVTIVRRDTLEKHQVEVEKV 375


>gi|254706742|ref|ZP_05168570.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261314206|ref|ZP_05953403.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261303232|gb|EEY06729.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
          Length = 658

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++    D  D   ++   P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDCVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|154282499|ref|XP_001542045.1| hypothetical protein HCAG_02216 [Ajellomyces capsulatus NAm1]
 gi|150410225|gb|EDN05613.1| hypothetical protein HCAG_02216 [Ajellomyces capsulatus NAm1]
          Length = 582

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q+S G   +LP G   L+ + + +R +  + G +E+  P++    LW  SG + +Y  +M
Sbjct: 109 QYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSIYKKSLWKVSGHWQNYKDDM 168

Query: 94  LRLADRN-------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             +  RN             D++    P +      +F+S   SYR LP  +       R
Sbjct: 169 YEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHR 228

Query: 141 DELRPRF-GVMRSREFLMKDAYSF 163
           +E+     G+ R R F   D + F
Sbjct: 229 NEISGSLSGLTRVRRFHQDDGHIF 252


>gi|148269334|ref|YP_001243794.1| threonyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166225512|sp|A5IJ45|SYT_THEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147734878|gb|ABQ46218.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermotoga
           petrophila RKU-1]
          Length = 640

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           +++ G+  +LP G   L+ +    RE     G  E+  P + +  LW  SG +D Y + M
Sbjct: 256 EYAPGMPFFLPKGVVVLNELMRFSRELHRERGYQEIFTPLIMNEQLWKISGHWDHYAENM 315

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               +++++     P +      +++S   SYR+LP  F++     R E      G+MR 
Sbjct: 316 Y-FIEKDEERYAVKPMNCPGHILVYKSRTVSYRDLPLRFFEFGRVHRYERSGVLHGLMRV 374

Query: 153 REFLMKDAYSFDLTPE 168
           R F   DA+ F  TP+
Sbjct: 375 RSFTQDDAHIF-CTPD 389



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 299 SATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           + T+ G D K+H   M    I G++     ++     G    +P  +AP ++++I I   
Sbjct: 491 NVTYIGPDNKEHRAVMIHRAIYGSLERFFGILIEHFAGA---FPTWLAPIQVAVIPISEK 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ 
Sbjct: 548 HN---DGAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKIS 604

Query: 418 IKHRLTGIREDMSLEEVI 435
           ++ R     +D+ LE  +
Sbjct: 605 VRTRTGKEIKDVDLEHFV 622


>gi|312218414|emb|CBX98360.1| similar to threonyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 784

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP GQ   + + A +REE    G  E+  P + ++ LW  SG +  Y  +
Sbjct: 341 HEFSPGSCFFLPHGQIIYNTLQAFLREEYWNRGYQEVGSPNMYNSALWKISGHWQHYADD 400

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +K  +  P +      IF+   +SYR LP       +  R+E      G+ R
Sbjct: 401 MFTFDVEKEKWAL-KPMNCPGHCLIFKHRERSYRELPIRMADFGILHRNEASGALTGLTR 459

Query: 152 SREFLMKDAYSF 163
            R F   D + F
Sbjct: 460 VRRFQQDDTHVF 471


>gi|148560208|ref|YP_001259002.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|148371465|gb|ABQ61444.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 693

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 270 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 325

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 326 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 385

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 386 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 444

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 445 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 475


>gi|118602649|ref|YP_903864.1| threonyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166225495|sp|A1AWT6|SYT_RUTMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118567588|gb|ABL02393.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 632

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 14/180 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GMI  H+KG   W  L Q     +  I ++   +    E+  P L    LW +SG ++ +
Sbjct: 261 GMIFWHAKG---W-TLCQLIEQYMRGIFKDNDYQ----EVHTPQLIDKSLWEKSGHWEKF 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           G  M   +  N    +  P +      I+   +KSYR+LP    +     R+E      G
Sbjct: 313 GDTMFTTSSENRDYAV-KPMNCPAHIQIYNQGLKSYRDLPLRLAEFGSCHRNEPSGTLHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F+  D + F  TPE  +   +        ++   G   + ++  + P   +G D
Sbjct: 372 IMRVRNFVQDDGHIF-CTPEQIQVEVSTFIDLTFAVYKHFGFDKVDIKLSTRPENHVGSD 430


>gi|327393701|dbj|BAK11123.1| Threonyl-tRNA synthetase ThrS [Pantoea ananatis AJ13355]
          Length = 642

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/398 (20%), Positives = 144/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 375 RVRGFTQDDAHIF-CTEDQLRTEVNSCIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDET 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
            +                            D    ++ N+I  ++     A      E  
Sbjct: 434 WD------------------------RAEEDLAAALNENNIEFEYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L+D L        R  + G +      +SLP  + AT+ G +       M    I G+M 
Sbjct: 470 LYDCLD-------RAWQCGTV---QLDFSLPKRLDATYVGENNDRQTPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP +  ++NI        +  E +  +L   G  V  D 
Sbjct: 520 RFIGILTEEFAG---FFPSWLAPMQAVVMNITDGQA---EYVETLTRKLQNAGIRVKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|306843943|ref|ZP_07476538.1| threonyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275698|gb|EFM57422.1| threonyl-tRNA synthetase [Brucella sp. BO1]
          Length = 658

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|257452295|ref|ZP_05617594.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317058838|ref|ZP_07923323.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313684514|gb|EFS21349.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 637

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/454 (21%), Positives = 178/454 (39%), Gaps = 86/454 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K FL +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R E 
Sbjct: 228 KDFLRLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMVLRNTLIDLWRAEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y +E +  +  +D      P +       F+  
Sbjct: 284 EKAGYVQIDTPIMLNRELWEISGHWFNY-RENMYTSSIDDVDFAIKPMNCPGGVLAFKYQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS------- 173
             SYR+LP    ++    R E      G+ R R F   D++ F +T E  +         
Sbjct: 343 QHSYRDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNL 401

Query: 174 ----YNKMF-VSY-----LRIFHRLGLKSIPMRAESGPIGGDLSH---EFIVLADTGETQ 220
               Y+K+F   Y      R    +G   I  +AE+  + G L+H   EF +  + G+  
Sbjct: 402 IDKFYSKLFGFQYSIELSTRPEKSIGTDEIWEKAETA-LAGALNHLGREFKI--NEGDGA 458

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            +  K  +DF I             ++I   W             +L  +LPE       
Sbjct: 459 FYGPK--LDFKIK------------DAIGRTWQCGTI--------QLDFNLPER------ 490

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGII 339
                               T+ G DG+ H  V +     G++     ++   + G   +
Sbjct: 491 -----------------FDVTYIGEDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPM 533

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LL 398
           W   +AP ++ ++ I   +  C    +++ A+L + G     DD  E IG +   A+   
Sbjct: 534 W---LAPVQVKVLTI---NDECAPYAKEVVAQLKEQGIRAELDDRSESIGYKIREANGRY 587

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             P+QVI+G   +   +V ++   +  +E M L+
Sbjct: 588 KIPMQVIIGKNEIEKREVNVRRFGSQAQESMELD 621


>gi|23501949|ref|NP_698076.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161619021|ref|YP_001592908.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843337|ref|YP_001627741.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254704361|ref|ZP_05166189.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254710151|ref|ZP_05171962.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254714150|ref|ZP_05175961.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716792|ref|ZP_05178603.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|256031646|ref|ZP_05445260.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256061156|ref|ZP_05451310.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256369496|ref|YP_003107004.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168776|ref|ZP_05755587.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|260566393|ref|ZP_05836863.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261218590|ref|ZP_05932871.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261317705|ref|ZP_05956902.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261321913|ref|ZP_05961110.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261325162|ref|ZP_05964359.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261755033|ref|ZP_05998742.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|261758257|ref|ZP_06001966.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988738|ref|ZP_06101295.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|38258386|sp|Q8G0L8|SYT_BRUSU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083599|sp|A9M582|SYT_BRUC2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083600|sp|B0CGM0|SYT_BRUSI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23347895|gb|AAN29991.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161335832|gb|ABX62137.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674060|gb|ABY38171.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|255999656|gb|ACU48055.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260155911|gb|EEW90991.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260923679|gb|EEX90247.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294603|gb|EEX98099.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261296928|gb|EEY00425.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261301142|gb|EEY04639.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261738241|gb|EEY26237.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261744786|gb|EEY32712.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|264660935|gb|EEZ31196.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 658

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|306841798|ref|ZP_07474483.1| threonyl-tRNA synthetase [Brucella sp. BO2]
 gi|306288128|gb|EFM59518.1| threonyl-tRNA synthetase [Brucella sp. BO2]
          Length = 661

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 238 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 294 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 353

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 354 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 412

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 413 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 443


>gi|213156053|ref|YP_002318098.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|301346223|ref|ZP_07226964.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301596041|ref|ZP_07241049.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|226701414|sp|B7I688|SYT_ACIB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213055213|gb|ACJ40115.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
          Length = 640

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 155/415 (37%), Gaps = 54/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R+ Q   G  E+  P +    LW +SG   +Y +
Sbjct: 255 MQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQEIKTPQIVDFTLWEKSGHAANYVE 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +    +  P +      +F   +KSYR+LP    +     R+E      G+M
Sbjct: 315 NMFTTHSESRNYAV-KPMNCPCHVQVFNQGLKSYRDLPIRLAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E             L ++   G + + M+  + P   +G D  
Sbjct: 374 RVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDVYKDFGFEEVQMKLSTRPEKRVGDD-- 430

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D  E      K   D              +L++   +W          +  K+
Sbjct: 431 ----ALWDLAE------KSLAD--------------ALDAAGLEWEL-QPGEGAFYGPKI 465

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT---KYSLPM---SATFKGADGKDHYVQMGSYGIGA 321
             SL +          +G ++  GT    ++LP+   ++     + +D  V +    +G+
Sbjct: 466 EFSLKDC---------LGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGS 516

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++   + G     P  ++P +  ++NI        +A E++ A+L + G     
Sbjct: 517 FERFIGILIEHYAG---FMPPWLSPVQACVMNITDSQA---EASEQVVAKLKENGLRAIS 570

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D   E+IG +     L   P  +++G + V +  V ++ R       MS++  I+
Sbjct: 571 DLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFID 625


>gi|225627544|ref|ZP_03785581.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617549|gb|EEH14594.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 693

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 270 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 325

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 326 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 385

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 386 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 444

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 445 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 475


>gi|163814284|ref|ZP_02205673.1| hypothetical protein COPEUT_00435 [Coprococcus eutactus ATCC 27759]
 gi|158449919|gb|EDP26914.1| hypothetical protein COPEUT_00435 [Coprococcus eutactus ATCC 27759]
          Length = 587

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/405 (19%), Positives = 150/405 (37%), Gaps = 60/405 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  +LP G      +   I+ ++ + G + +  P + + +L+  SG +D Y   M  
Sbjct: 201 GRGLPMFLPKGYTVWQELENYIKRKERKLGYLHVMTPCVGTVNLYKTSGHWDHYKDNMFP 260

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             +   ++ +  P +      I+ + + SY++LP    +I   FR E      G+ R R 
Sbjct: 261 AMEMEGESFVLRPMNCPHHMMIYANKMHSYKDLPIRIAEIAHDFRFEASGTLKGIERGRH 320

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D++ F +TP+  +  +                             G +   F    
Sbjct: 321 FCQNDSHIF-VTPDQIEEEF----------------------------AGVVKLIFDTYK 351

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D G T   C     D   P +   + D        E W     A   V ++   D   E 
Sbjct: 352 DFGITDYRCVLSLRD---PEDKVKYHDDD------EMWNKAENALRRVLDDIGIDYTEEI 402

Query: 275 KRVSARGIE--------VGHIFYFGT---KYSLPMSATFKGADG---KDHYVQMGSYGIG 320
              +  G +        VG+ +   T    + LP     K  D    K   V +    +G
Sbjct: 403 GEAAFYGPKLDVNVKPAVGNEYTLSTCQLDFCLPAKFDLKYIDKDGEKKTPVVLHRAILG 462

Query: 321 AM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           ++ R +A ++E +   KG + P  +AP ++ ++ +K  ++       K+   L  +   V
Sbjct: 463 SLDRFMAYILEET---KGNL-PTWLAPVQVRVMPVKTDNEDLMAYAHKVVDALDAIDVRV 518

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             DD  E++G +     +   P  +++G  F       + +RL G
Sbjct: 519 ELDDRAEKLGYRMREGQVQKVPYLLVIG--FNEAENGTVSYRLHG 561


>gi|266623074|ref|ZP_06116009.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288865169|gb|EFC97467.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 691

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K +  +   I +E+ + G +    P +   DL+V S  +D Y + M  L
Sbjct: 301 QGLPLLMPKGAKIIQTLQRWIEDEEEKRGYMRTKTPLMAKKDLYVISDHWDHYKEGMFVL 360

Query: 97  AD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D  ++D+     P        +++   KSYR+LP  + +    FR+E      G+ R R
Sbjct: 361 GDEEKDDEVFALRPMTCPFQYYVYKQSPKSYRDLPCRYGETSTLFRNEDSGEMHGLTRVR 420

Query: 154 EFLMKDAY 161
           +F + + +
Sbjct: 421 QFTISEGH 428



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H   MG Y     R +A +IE  ++G    W   + P ++ ++ I    +   D  EK+ 
Sbjct: 559 HRTSMGCY----ERTLAWLIEK-YEGAFPTW---LCPEQVRVLPIS---EKYHDYAEKVE 607

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           + L   G     D+  E+IG +   A L   P  ++VG K   D  V ++ R  G     
Sbjct: 608 SELKSNGILATVDERAEKIGYKIREARLAKLPYMLVVGQKEEEDGLVSVRSRFNGDEGQK 667

Query: 430 SLEEVINYAS 439
           SL + I+  S
Sbjct: 668 SLSDFIDAIS 677


>gi|47575750|ref|NP_001001219.1| threonyl-tRNA synthetase [Xenopus (Silurana) tropicalis]
 gi|301626626|ref|XP_002942489.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
 gi|45709710|gb|AAH67949.1| threonyl-tRNA synthetase-like 2 [Xenopus (Silurana) tropicalis]
          Length = 721

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/415 (20%), Positives = 164/415 (39%), Gaps = 57/415 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP G    + + A IR+E  + G  E+  P + ++ LW  SG +  Y + 
Sbjct: 334 HELSPGSCFFLPKGAYIYNQLIAFIRQEYRKRGFQEVVTPNVYNSKLWQTSGHWQHYSEN 393

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 394 MFSF-EVEKEIFALKPMNCPGHCLMFDHRPRSWRELPLRMADFGVLHRNELSGALTGLTR 452

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHE 209
            R F   DA+ F    +  +    K  + +LR  + +   +  +   + P    GD    
Sbjct: 453 VRRFQQDDAHIFCAMEQIEEEI--KSCLDFLRAVYNVFGFTFKLNLSTRPEKFLGD---- 506

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVH 263
            I + +  E Q+             EN       SLN   E+W       A Y    D+ 
Sbjct: 507 -IEVWNQAEKQL-------------EN-------SLNEFGEKWVLNPGDGAFYGPKIDI- 544

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGA 321
             ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G+
Sbjct: 545 --QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIIHRAILGS 594

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +  + A++  +  GK   WP  ++P ++ ++ +      C +  +++  +  + G     
Sbjct: 595 VERMIAILTENFGGK---WPLWLSPQQVMVVPVGP---TCDEYAQQVREQFHRAGLMTDV 648

Query: 382 D-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D D G  +  +   A L  +   +++G K  +   V I+ R   +  + ++ E I
Sbjct: 649 DLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTVNIRTRDNKVHGERTIAETI 703


>gi|89071308|ref|ZP_01158467.1| threonyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89043173|gb|EAR49409.1| threonyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 654

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 12/190 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G   W P G      +   +R +Q   G  E++ P +    LW  SG +D Y  
Sbjct: 264 MQAEAPGQVFWHPNGWTVYTTLQDYMRRKQRAGGYREINTPQVVDRKLWEASGHWDKYQD 323

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    + A         P +      +F   +KSYR+LP    +     R E    
Sbjct: 324 HMFIVEVDEEHAQEKAINALKPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCSRYEPSGA 383

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP--- 201
             G+MR R F   DA+ F    E    +    F+++L  I+  LG  +  ++  + P   
Sbjct: 384 LHGIMRVRGFTQDDAHIF--CTEDQIEAECARFINFLAGIYEDLGFPTFEIKFATRPEKR 441

Query: 202 IGGDLSHEFI 211
           +G D S + +
Sbjct: 442 VGSDASWDHV 451


>gi|332284530|ref|YP_004416441.1| threonyl-tRNA synthetase [Pusillimonas sp. T7-7]
 gi|330428483|gb|AEC19817.1| threonyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 648

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 13/163 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H    + G+  W P G      V   +R     
Sbjct: 236 YLTMLEE----AERRDHRKIGRELDLFHFQDEAPGLIFWHPKGWTLWQQVEQYMRSVYRD 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSH 121
            G  E+  P +    LW ++G +D+Y + M      N    +YG  P +      IF + 
Sbjct: 292 NGYQEVKAPQILDLSLWKKTGHWDNYAENMFTTESEN---RVYGLKPMNCPGHVQIFNAG 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           + SYR LP  + +     R+E      G+MR R F   D + F
Sbjct: 349 LHSYRELPIRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF 391


>gi|313681237|ref|YP_004058975.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154097|gb|ADR32775.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 602

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WLP G +    +  ++ +   + G   +  P +  +DLW  SG Y +YG+ M    
Sbjct: 228 GFPIWLPAGARMRSRLEQLLFKAHRKRGYEPVRGPEMLRSDLWKVSGHYQNYGENMY-FT 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      ++   + SYR+LP  +++  +  R E+     G+ R REF 
Sbjct: 287 HIDELEFGVKPMNCVGHIKVYEHDLHSYRDLPLKYFEYGVVHRHEMTGALHGLFRVREFT 346

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 347 QDDAHIF 353


>gi|57234472|ref|YP_181487.1| threonyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|123759710|sp|Q3Z8G2|SYT_DEHE1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57224920|gb|AAW39977.1| threonyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 582

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 164/430 (38%), Gaps = 63/430 (14%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +L+E+  RD      +L L +  +HQ    G+ +WLP G      +    ++E  + 
Sbjct: 174 YLNMLEESAKRDHRKLGKELELFS--LHQEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKR 231

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +S
Sbjct: 232 GYSLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRS 291

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVM----RSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           Y+ LP    ++   +R E   R GV+    R R F   DA+ F L  +  K     + ++
Sbjct: 292 YKELPIRMAELGTVYRYE---RSGVLHGLSRVRGFTQDDAHIFCLYEQLEKEVVKVLDLA 348

Query: 181 YLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI--VLADTGET-QVFCSKDFMD--FPI 232
              I    G     +   + P   +G     E+   +LA   E+ Q+    D  +  F  
Sbjct: 349 KFMI-DTFGFTRYKVMLSTRPEKYVGELDKWEYATDILAKALESNQIAYQVDPGEGVFYG 407

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P  +  F+D +        W  P   T  V  +     LPE   VS  G           
Sbjct: 408 PKIDIKFEDALG-----RAWQGP---TIQVDFQ-----LPERFDVSVVG----------- 443

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                        DGKD  V M    + G+M    + +   + G   +W   ++P ++ L
Sbjct: 444 ------------EDGKDQPVAMVHRTVLGSMERFMSCLTEQYGGAFPVW---LSPKQVML 488

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I I        +  EK+   L +    V  D+  E +  +   A L   P  ++VG K +
Sbjct: 489 IPIADRHS---EFAEKLACELREEEVRVEVDNRSETMNQKIRQAQLAKIPYMLVVGDKEI 545

Query: 412 SDSKVEIKHR 421
               V I+ R
Sbjct: 546 ETQSVSIRTR 555


>gi|148909063|gb|ABR17634.1| unknown [Picea sitchensis]
          Length = 682

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G     N+    +    + G   +  P +  ADLW  SG  + Y + M    
Sbjct: 306 GLVFWHPRGAIIRQNIEDFWKRTHIQHGYELLYTPHVDKADLWKISGHLEFYKENMFNQM 365

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  D+     P +      +++  ++SYR+LPF   ++   +R E+     G+ R R F 
Sbjct: 366 DIEDELYQLRPMNCPYHILVYKHSLRSYRDLPFKVAELGTVYRYEMSGSLHGLFRVRGFT 425

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 426 QDDAHIFCL 434


>gi|170290849|ref|YP_001737665.1| glycyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174929|gb|ACB07982.1| glycyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 508

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 133/323 (41%), Gaps = 34/323 (10%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM---FVSY-L 182
            LPF   Q+   FR+E+ PR  ++R REF   +   F   PE     Y +    F+ Y L
Sbjct: 188 KLPFALGQVGRVFRNEISPRRALIRMREFQQLEVQIF-FDPENPDELYREKLEPFLDYKL 246

Query: 183 RIFHRLGLKS---IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           R   R   +S   + + A    + G   +  I        + F   + + FP+       
Sbjct: 247 RFLRREDRESGRIVEIPAREALMSGYTVNSLITYWLVAYQRFF--NETLGFPL------- 297

Query: 240 DDIISLNSIVEQWTAPYAATS---DVHNEKL-FDSLPENKRVSARGIEVGHIFYFGTKYS 295
            + +    +VE   A Y+      +V+ E L +  L  N   +   +  GH+   G    
Sbjct: 298 -ERLRYRELVEGEKAHYSLVHWDLEVYTEDLGWIELVNNAYRTDYDLS-GHMRVSGIDLR 355

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVA-AVIESSHDGKGIIW---PDSVAPFKISL 351
           + +  +      +     M    IG  RV+   ++ +  + +  +W   P S+AP ++ +
Sbjct: 356 IAIPES-----DRKLLPHMYEPSIGVDRVILHELMLAYREDEERVWLQLPRSIAPIEVGV 410

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             +   D++   A E IY  L   G   F+DD G  IG ++   D +G PL V +  + +
Sbjct: 411 FPLLKRDELPSKARE-IYHELINEGIIAFYDDSG-TIGRRYRRMDEIGTPLCVTIDYQTL 468

Query: 412 SDSKVEIKHRLTGIREDMSLEEV 434
            D  V ++ R T ++  +  EE+
Sbjct: 469 EDDTVTLRDRDTMMQVRVRREEL 491


>gi|257463827|ref|ZP_05628214.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317061364|ref|ZP_07925849.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313687040|gb|EFS23875.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 637

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 97/452 (21%), Positives = 173/452 (38%), Gaps = 84/452 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K FL +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R E 
Sbjct: 228 KDFLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMVLRNTLIDLWRAEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y +E +  +  +D      P +       F+  
Sbjct: 284 EKAGYVQIDTPIMLNRELWEISGHWFNY-RENMYTSSIDDVDFAIKPMNCPGGVLAFKYQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS------- 173
             SYR+LP    ++    R E      G+ R R F   D++ F +T E  +         
Sbjct: 343 QHSYRDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNL 401

Query: 174 ----YNKMF-VSY-----LRIFHRLGLKSIPMRAESGPIGG--DLSHEFIVLADTGETQV 221
               Y+K+F   Y      R    +G   I  +AE+   G    L  EF +  + G+   
Sbjct: 402 IDKFYSKLFGFQYSIELSTRPEKSIGTDEIWEKAEAALAGALHHLGREFKI--NEGDGAF 459

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           +  K  +DF I             ++I   W             +L  +LPE        
Sbjct: 460 YGPK--LDFKIK------------DAIGRTWQCGTI--------QLDFNLPER------- 490

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                              T+ G DG+ H  V +     G++     ++   + G   +W
Sbjct: 491 ----------------FDVTYVGEDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPMW 534

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLG 399
              +AP +I ++ I   +  C    ++I  +L + G     DD  E IG +   A+    
Sbjct: 535 ---LAPVQIKVLTI---NDDCVSYAKEIVEKLKEQGIRAELDDRSESIGYKIREANGRYK 588

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            P+QVI+G   +   +V I+   +  +E M L
Sbjct: 589 IPMQVIIGKNEIEKKEVNIRRFGSQAQESMDL 620


>gi|119774900|ref|YP_927640.1| threonyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|166225496|sp|A1S6G4|SYT_SHEAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119767400|gb|ABL99970.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella
           amazonensis SB2B]
          Length = 642

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR + +     E+  P +    LW  SG +D Y  
Sbjct: 256 MQEEAPGMVFWHNDGWSIFRELETFIRHKLSEYDYQEVKGPFMMDRVLWERSGHWDKYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   A  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTASENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +   +         +   G ++I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVQEEVSACIRMVYDTYSTFGFENIVVKLSTRPEKRIGDD 431


>gi|57506155|ref|ZP_00372076.1| threonyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57015550|gb|EAL52343.1| threonyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 602

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 183/443 (41%), Gaps = 43/443 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    Q   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLHIIEEARKRDHRKLGSELKLFT-FDEQIGGGLPIWLSNGTRLRSKLEQMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  A+ W  SG Y +Y KE +   + +++     P +      I+++ ++
Sbjct: 254 RGYEPVRGPELLKAEAWKISGHYANY-KENMYFTNIDEQEYGIKPMNCVGHIKIYQNDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV S
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILDFVAS 372

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            ++IF       I  R E   IG +   E    A          K+ +D     +   + 
Sbjct: 373 LMKIFDFEYEMEISTRPEKA-IGDEAIWEVATKA---------LKEALD----EQGLKY- 417

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I E   A Y    D+   K+ D+L   ++     I+V   F    +++L  + 
Sbjct: 418 ------GIDEGGGAFYGPKIDI---KITDAL--KRKWQCGTIQVD--FNLPERFALEYTT 464

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    + K+  V +    +G+      ++     G+   +P  +AP ++ ++ I    +V
Sbjct: 465 S---ENTKERPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPIQVGIVPI---SEV 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                + I   L ++G D    D  E +  +   A+    P+ +++G + +S+  V ++ 
Sbjct: 516 HLAYAKGIQRTLLEMGVDSEIYDKNESLSKKIRNAEKQKLPMILVIGDEELSNRAVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R    ++ +SL+E +N    + +
Sbjct: 576 RRAKEQKSLSLDEFMNLIKEKIN 598


>gi|219685509|ref|ZP_03540326.1| threonine--tRNA ligase [Borrelia garinii Far04]
 gi|219672908|gb|EED29930.1| threonine--tRNA ligase [Borrelia garinii Far04]
          Length = 581

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/409 (18%), Positives = 157/409 (38%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 205 GLIFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T         ++    + ++ + G  S+     + P   +G D   E  + 
Sbjct: 325 QDDAHII-CTHSQVVDEIKEVLRFAIYMWSKFGFSSLKAYLSTKPDKSVGNDYDWEMSLK 383

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                      +   +F +P E            I +   A Y    D+   K+ DSL  
Sbjct: 384 V--------LEEALSNFEVPYE------------IDKGGGAFYGPKIDL---KIVDSLER 420

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
             ++S    +          ++LP   + T+   DGK+    M     +G++     ++ 
Sbjct: 421 EWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGILV 470

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   +W   ++P +  +I +   +    D   K+  +    G  +  D+   ++ +
Sbjct: 471 EHYGGAFPLW---LSPVQAVIIPV---NNTVEDYTIKVLNKFKNAGIRIKLDNSSSRMNA 524

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVI 435
           +         P   I+G +   + K+ I+ R    ++GI  D +L+ ++
Sbjct: 525 KIREYQAKKIPYMFIIGEREAIEEKISIRTRTNEQISGIELDEALKLIL 573


>gi|84391304|ref|ZP_00991635.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376593|gb|EAP93471.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 460

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G      +   IR++       E+  P +    LW  SG +D Y +
Sbjct: 257 MQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDYQEVKGPLMMDRVLWERSGHWDKYAE 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 317 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 375

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 376 RVRGFTQDDAHVF 388


>gi|187250976|ref|YP_001875458.1| threonyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|186971136|gb|ACC98121.1| Threonyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 583

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/400 (20%), Positives = 155/400 (38%), Gaps = 46/400 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G      V   IR+E  + G   +  P +    LW +SG  + Y + M +  + +D+ 
Sbjct: 205 PKGGMLRKVVEDWIRDENIKHGYDLVYSPHIARLHLWQKSGHANFYSENMFQPIEVDDQQ 264

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      I+ SH++SYR+LP    ++   +R E      G++R R F   DA+ 
Sbjct: 265 YQLKPMNCPFHIAIYESHLRSYRDLPVRLAELGTVYRYERSGVVHGLLRVRGFTQDDAHI 324

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA----ESGP---IGGDLSHEFIVLAD 215
           F  TPE         F   + +    G +   +      E+ P    GG          D
Sbjct: 325 F-CTPEQMNGEIEDCFNFAMLVMKTFGFEKFSVELSTWDETKPENYTGGK--------KD 375

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E Q     + ++  +   N  F       ++     A Y    D+   K+ D++    
Sbjct: 376 WEEAQ-----NALESVLKKNNVPF-------TVHAGEAAFYGPKIDI---KVMDAIGRYW 420

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           ++S    +      F  +Y  P        +G+   + +    +G++     V+   + G
Sbjct: 421 QLSTIQFDFNLPQKFELEYVSP--------EGRKRPLMVHRALLGSIERFLGVLIEHYAG 472

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
              +W   +AP ++ L+ +   DQ   D  + +  ++   G     D   E++G +   A
Sbjct: 473 LFPLW---LAPVQVKLLTL-TDDQF--DFAKDVVKQMKLAGLRAELDSRPEKLGLKIREA 526

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +   P  +++G+K   +  + ++ R     E +S+ +VI
Sbjct: 527 HVEKIPYSIVIGAKEAENKTLTLRLRSGKNVEGLSVGDVI 566


>gi|126650283|ref|ZP_01722511.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126592933|gb|EAZ86915.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 637

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/409 (20%), Positives = 166/409 (40%), Gaps = 44/409 (10%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H+ +   L   M  + + G+  +L  GQ   + + + +R  Q +    E+  P 
Sbjct: 239 EAEKRNHRKLGKELSLFMFSEEAPGMPFYLANGQILRNELESYLRNLQAKYDYREVRTPL 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG +D Y K+ +     +D++    P +      IF++ + SYR+LP    
Sbjct: 299 MMNQRLWEQSGHWDHY-KDNMYFTQVDDQSFALKPMNCPGHMLIFKNSLHSYRDLPIRMA 357

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK- 191
           +     R E      G++R R F   DA+ F  TP+  ++           +++  G + 
Sbjct: 358 EFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-ATPQQIENEIALALKIIDEVYNVFGFQY 416

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           S+ +        G+LS     L D  E       + ++  + +   D+       +I E 
Sbjct: 417 SVELSTRPDDYMGELS-----LWDQAE-------EALENVLTNLGIDY-------TINEG 457

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D+H   + D++  + + +   ++    F    K+ L         + K   
Sbjct: 458 DGAFYGPKIDIH---IKDAIQRSHQCATVQLD----FQLPEKFDL---TYINEHNEKVRP 507

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           V +     G++     ++     G   IW   +AP ++ +I +  AH    +D  +++  
Sbjct: 508 VVIHRAVFGSIDRFLGILIEHFGGAFPIW---LAPQQVQVIAVADAH----QDYAKQVVK 560

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            L      V  DD  E++G +   A L   P  +++G +  +   V ++
Sbjct: 561 ALQHEQIRVQLDDRQEKLGKKIREAQLHKIPYILVIGDRETAHQNVSVR 609


>gi|325917697|ref|ZP_08179888.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536091|gb|EGD07896.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 634

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVFCLESQ-IEAEVTAFHQQALAVYTAFGFDDIEIKIALRPEKRLGDDGT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAEAALRTALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        D  + +   L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVANIT---DAQADYVDSVRKTLANQGFRVNADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHTLQRVPYLLVVGDREKENGAVAVRTR 611


>gi|302682704|ref|XP_003031033.1| hypothetical protein SCHCODRAFT_77271 [Schizophyllum commune H4-8]
 gi|300104725|gb|EFI96130.1| hypothetical protein SCHCODRAFT_77271 [Schizophyllum commune H4-8]
          Length = 728

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G +  + +  ++R E  + G  E+  P + +A LW  SG +++Y  +
Sbjct: 337 HDLSPGSCFFLPHGTRIYNTLIELMRSEYFKRGYQEVISPNMYNAKLWETSGHWENYKDD 396

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  L    D   +  P +      IF S  +SYR LP    +  +  R+E      G+ R
Sbjct: 397 MFTLDIEKDNWAL-KPMNCPGHCLIFDSRDRSYRELPIRMAEFGIIHRNEASGALSGLTR 455

Query: 152 SREFLMKDAYSF 163
            R F+  D + F
Sbjct: 456 VRRFVQDDTHIF 467


>gi|117164481|emb|CAJ88027.1| putative threonyl tRNA synthetase [Streptomyces ambofaciens ATCC
           23877]
          Length = 411

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G     ++   IR  + R G   +  P L   +L+  SG +  Y  +M    
Sbjct: 26  GLPYWLPDGAAVRYSLEEYIRAAERRAGYRHVYSPVLGKRELYEISGHWAHYSDDMFPPM 85

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D   + ++  P+       I+RS   SYR LP    ++   +R EL     G+ R R   
Sbjct: 86  DLGGEQVVLRPSLCPHHAVIYRSRSHSYRELPLRMAELGGMYRSELSGVLGGLTRVRAIQ 145

Query: 157 MKDAYSF 163
           + DA+ F
Sbjct: 146 LNDAHIF 152


>gi|49474171|ref|YP_032213.1| threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|73919771|sp|Q6FZZ7|SYT_BARQU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49239675|emb|CAF26046.1| Threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 658

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 175/447 (39%), Gaps = 55/447 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEDGPGMIFWHQKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR----LADRNDKAMIYG--PTHEEVMT 115
           +     E++ P +    LW  SG +  Y + M +    + D +DK  IY   P +     
Sbjct: 289 DDHQYSEVNAPQVLDKSLWELSGHWGWYKENMFKAIPAIEDWDDKC-IYALKPMNCPGHV 347

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +    
Sbjct: 348 QIFKHSLKSYRDLPVRLAEFGVVHRYEPSGALHGLMRVRSFTQDDAHIFCTDEQLADECL 407

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           N +    L  +   G K I ++  + P   +G D       L D  E       + M+  
Sbjct: 408 N-INDLILSTYADFGFKEISLKLSTRPEKRVGSD------SLWDHAE-------NIMESV 453

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           + +  T F   I   SI+    A Y    +     L D++    +     ++        
Sbjct: 454 LKTIETKFAGQIK-TSILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVD-------- 501

Query: 292 TKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +   D +     M    I G+M     ++  +  G   +W   +AP +
Sbjct: 502 --FNLPERFDAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLW---LAPEQ 556

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +      +  +KI ARL  VG     D   E+I  +     L   P+ ++ G 
Sbjct: 557 VVVAAITSE---ANEYAKKITARLKAVGLSAKSDLRNEKINYKIREHSLQKVPVILVCGK 613

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +    + V ++   +  +  +S+EE I
Sbjct: 614 REAETNSVSMRRLGSTDQVFLSIEETI 640


>gi|257465911|ref|ZP_05630222.1| threonyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917067|ref|ZP_07913307.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690942|gb|EFS27777.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 637

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/454 (21%), Positives = 177/454 (38%), Gaps = 86/454 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K FL +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R E 
Sbjct: 228 KDFLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMVLRNTLIDLWRAEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y +E +  +  +D      P +       F+  
Sbjct: 284 EKAGYVQIDTPIMLNRELWEISGHWFNY-RENMYTSSIDDVDFAIKPMNCPGGVLAFKYQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS------- 173
             SYR+LP    ++    R E      G+ R R F   D++ F +T E  +         
Sbjct: 343 QHSYRDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNL 401

Query: 174 ----YNKMF-VSY-----LRIFHRLGLKSIPMRAESGPIGGDLSH---EFIVLADTGETQ 220
               Y+K+F   Y      R    +G   I  +AE+  + G L+H   EF +  + G+  
Sbjct: 402 IDKFYSKLFGFQYSIELSTRPEKSIGTDEIWEKAETA-LAGALNHLGREFKI--NEGDGA 458

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            +  K  +DF I             ++I   W             +L  +LPE       
Sbjct: 459 FYGPK--LDFKIK------------DAIGRTWQCGTI--------QLDFNLPER------ 490

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGII 339
                               T+ G DG+ H  V +     G++     ++   + G   +
Sbjct: 491 -----------------FDVTYIGEDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPM 533

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LL 398
           W   +AP ++ ++ I   +  C    +++ A+L   G     DD  E IG +   A+   
Sbjct: 534 W---LAPVQVKVLTI---NDECAPYAKEVVAQLKAQGIRAELDDRSESIGYKIREANGRY 587

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             P+QVI+G   +   +V ++   +  +E M L+
Sbjct: 588 KIPMQVIIGKNEIEKREVNVRRFGSQAQESMELD 621


>gi|170077251|ref|YP_001733889.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|169884920|gb|ACA98633.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 604

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 8/170 (4%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q   G+  W P G      +   ++ EQ + G   +  P +   DL+  SG + +Y ++M
Sbjct: 214 QVGPGLPLWTPKGTLIRSTLENFLKAEQTKRGYQGVVTPHIARVDLFKVSGHWQNYREDM 273

Query: 94  LRL-----ADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             +     A+R  ++  +  P +      I++  ++SYR LP    +    +R E     
Sbjct: 274 FPMMADGDAERAAEQGFVMKPMNCPFHIQIYKDQLRSYRELPIRLAEFGTVYRYEQSGEL 333

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            G+ R R F + D++ F +TP+  +  +  +    L +F  L LK+   R
Sbjct: 334 GGLTRVRGFTVDDSHLF-VTPDQLEAEFFNVVDLILTVFKSLQLKNFKAR 382


>gi|298291991|ref|YP_003693930.1| threonyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928502|gb|ADH89311.1| threonyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 666

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 15/184 (8%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA--IEMSVPTLQSADLWVESGRYDSYG 90
            +   G+  W P G     N+ A +R    R  A   E++ P +    LW  SG +  Y 
Sbjct: 272 QEEGPGVVFWHPKGWNLFQNLVAYMR---RRLAADYSEVNAPQVLDKSLWETSGHWGWYK 328

Query: 91  KEMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
             M ++     A+ ND+     P +      IF+  +KSYR+LP    +     R E   
Sbjct: 329 DNMFKVQPAGDAEDNDRVYALKPMNCPGHVQIFKHGLKSYRDLPMRLAEFGAVHRYEPSG 388

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--- 201
              G+MR R F   DA+ F  T E       K+    L  +   G + I ++  + P   
Sbjct: 389 ALHGLMRVRGFTQDDAHIF-CTEEQMAAECLKINELILSTYADFGFEEIVVKLSTRPEKR 447

Query: 202 IGGD 205
           +G D
Sbjct: 448 VGSD 451


>gi|85057943|ref|YP_456859.1| threonyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123738887|sp|Q2NIG3|SYT_AYWBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84790048|gb|ABC65780.1| threonyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 641

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 153/374 (40%), Gaps = 35/374 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   I +++       +  P + + +L+  SG  D Y   M  + 
Sbjct: 260 GLPFWLPKGATVRRIVERYIVDKELSYDYHHVYTPIMANTELYRISGHLDHYASNMFPIM 319

Query: 98  D-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              N + ++  P +      I++ +  SY+ LP    ++ +  R E      G+ R RE 
Sbjct: 320 SLENGEKLVLRPMNCPHHMMIYKKNPHSYKELPLRIAELGMMHRFEKSGAVSGLQRVREM 379

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K    K+    L ++    +K+  +R         LS+      +
Sbjct: 380 TLNDAHIFA-RPDQIKEEIKKIINLILEVYCDFNIKNYELR---------LSYR-----N 424

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              T+ + + D M +   +E T  + I  L    ++     A      + ++F++L   +
Sbjct: 425 PNNTEKYFNDDQMWY--NAEKTLKETIKELGLPFKEAIGEAAFYGPKLDVQVFNALGNEE 482

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSH 333
            +S   ++    F    K+ L    TF G D K H  V +    +  M R +A ++E + 
Sbjct: 483 TLSTVQLD----FLLPQKFDL----TFIGEDNKHHRPVVIHRAVVSTMERFLAHLVEET- 533

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             KG ++P  +AP ++ LI + A   +  +  +KI   L      V  +     +G +  
Sbjct: 534 --KG-VFPLWLAPVQVLLIPVSA--PLHFEFSQKIKETLQLQNFRVEINSKDNTLGYKIR 588

Query: 394 VADLLGFPLQVIVG 407
            A  L  P QV++G
Sbjct: 589 EAQKLKIPYQVVIG 602


>gi|225561384|gb|EEH09664.1| threonyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 577

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q+S G   +LP G   L+ + + +R +  + G +E+  P++    LW  SG + +Y  +M
Sbjct: 104 QYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSIYKKSLWKVSGHWQNYKDDM 163

Query: 94  LRLADRN-------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             +  RN             D++    P +      +F+S   SYR LP  +       R
Sbjct: 164 YEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHR 223

Query: 141 DELRPRF-GVMRSREFLMKDAYSF 163
           +E+     G+ R R F   D + F
Sbjct: 224 NEISGSLSGLTRVRRFHQDDGHIF 247


>gi|295704482|ref|YP_003597557.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294802141|gb|ADF39207.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 296

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H+ +   L   M  + + G+  +LP G    + +    +++  + G  E+  P 
Sbjct: 6   EAEKRNHQKLGQELELFMSMEEAPGMPFFLPNGMIVRNELENYWKQKHYKAGYQEIKTPI 65

Query: 74  LQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           +   +LW +SG ++ Y + M     D+ + A+   P +      +F S  +SYR LP  +
Sbjct: 66  MMKQELWEQSGHWEHYHENMYFSNVDKQNYAI--KPMNCPGAILLFNSKRRSYRELPVRY 123

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            ++ L  R EL     G++R R F   DA+ F
Sbjct: 124 AELGLVHRHELSGSLNGLLRVRSFTQDDAHLF 155


>gi|168064726|ref|XP_001784310.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664141|gb|EDQ50872.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 685

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IR+E  + G  E+  P + +  LW  SG   +Y 
Sbjct: 304 FFHELSPGSCFFLPHGARIYNKLQAFIRDEYRKRGYEEVVSPNMFNMQLWETSGHAANYK 363

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M    +   +     P +      IF   ++SYR LP       +  R+EL     G+
Sbjct: 364 DNMFTF-EVEKQEFGLKPMNCPGHCLIFDHRVRSYRELPLRLADFGVLHRNELSGALSGL 422

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 423 TRVRRFQQDDAHIF 436


>gi|240274490|gb|EER38006.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H143]
          Length = 550

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q+S G   +LP G   L+ + + +R +  + G +E+  P++    LW  SG + +Y  +M
Sbjct: 105 QYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSIYKKSLWKVSGHWQNYKDDM 164

Query: 94  LRLADRN-------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             +  RN             D++    P +      +F+S   SYR LP  +       R
Sbjct: 165 YEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHR 224

Query: 141 DELRPRF-GVMRSREFLMKDAYSF 163
           +E+     G+ R R F   D + F
Sbjct: 225 NEISGSLSGLTRVRRFHQDDGHIF 248


>gi|226304250|ref|YP_002764208.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|226183365|dbj|BAH31469.1| putative threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 406

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G    + +     E+  R+G   +  P +   +L+  SG +  + ++M    
Sbjct: 24  GLPLWLPDGAVIRNELEKFAAEQAARSGCQGVYTPVMAKKELYERSGHWSKFSEDMFPEM 83

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
               ++ +  P +      +F +  +SYR LPF   ++   FR EL     G+ R R+  
Sbjct: 84  KIGGESFLLRPANCPHHAQVFAARGRSYRELPFRVRELGSMFRSELSGVLSGLSRVRQIN 143

Query: 157 MKDAYSF 163
           + DA+ F
Sbjct: 144 LDDAHVF 150


>gi|294667581|ref|ZP_06732796.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602701|gb|EFF46137.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 634

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAESALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        D+  K    L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVANITDAQAEYVDSVRKT---LANQGFRVSADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     +   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHTMQRVPYLLVVGDREKENGAVAVRTR 611


>gi|219682056|ref|YP_002468440.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254783513|sp|B8D730|SYT_BUCAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219621789|gb|ACL29945.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085869|gb|ADP65951.1| threonyl-tRNA synthetase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086439|gb|ADP66520.1| threonyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087022|gb|ADP67102.1| threonyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087587|gb|ADP67666.1| threonyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 642

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 151/398 (37%), Gaps = 54/398 (13%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GMI  H+KG   W+   +     +   +R +       E+  P L    +W +SG +D+Y
Sbjct: 262 GMIFWHNKG---WIIFNE-----LQNFVRVKLKEYKYEEVKTPLLIDKLIWKQSGHWDNY 313

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
              +      + +  I  P +      IF S +KSYR+LP    +     R+E      G
Sbjct: 314 KNAIFTTLSEHREYCI-KPMNCPGHVQIFNSRLKSYRDLPIRMAEFGSCHRNEPSGSLHG 372

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F   DA+ F  T E  +   N        ++     K I ++  + P   IG D
Sbjct: 373 LMRVRNFTQDDAHIF-CTREQVRSEINDCIKMIYDLYSTFHFKKILVKLSTRPEKRIGTD 431

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  L +  E                   D  D++  N +  ++ +   A      E
Sbjct: 432 ------SLWNESE------------------KDLSDMLIENHLSFEYQSGEGAFYGPKIE 467

Query: 266 KLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM-R 323
            +  DSL  N +     ++    FY   + S   S      + K   V +    +G++ R
Sbjct: 468 FILQDSLDRNWQCGTIQLD----FYLPLRLS---SFYINEKNEKKVPVIIHRAILGSIER 520

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE          P  ++P ++ +I+I     +     ++++ + S V   +  D 
Sbjct: 521 FIGILIEECSGN----LPTWLSPVQVVIISI---TDISSGYVKELFKKFSDVNIRIECDL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  +I G K  S  K+ +++R
Sbjct: 574 RNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNR 611


>gi|39969493|ref|XP_366137.1| hypothetical protein MGG_10357 [Magnaporthe oryzae 70-15]
 gi|145015163|gb|EDJ99731.1| hypothetical protein MGG_10357 [Magnaporthe oryzae 70-15]
          Length = 566

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 7/173 (4%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADL 79
            +++L+  MI  +++  G Y   P        +    +E+ +  G  E S P  L S  L
Sbjct: 76  QEVVLKAEMIEYYTEISGFYILRPAAMFVWSQIRKWFQEKIDVMGVEEASFPMFLSSKSL 135

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 136 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 195

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L
Sbjct: 196 NSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEEDAGKEVLEILEHYAGVYEQL 248


>gi|293192627|ref|ZP_06609581.1| threonine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292820134|gb|EFF79131.1| threonine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 677

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 130/345 (37%), Gaps = 63/345 (18%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  FY++   +R E      G+ R R F   D++++  TPE +     
Sbjct: 364 IFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQASEEIR 422

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                +L I    GLK   +   +    G    +FI                        
Sbjct: 423 TQIAFFLSILSAFGLKDFYLELSTRDEDGKKKDKFI------------------------ 458

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--------GHI 287
            +D           E W A   A  D       D +P+    +  G +V        G  
Sbjct: 459 GSD-----------EDWAAATKALEDACAATGLDLVPDPGGAAFYGPKVSVQVKDAIGRT 507

Query: 288 FYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +   T    ++ P      +  ADG +   V + S  +G++     V+   + G    W 
Sbjct: 508 WQMSTIQYDFNQPDRFDLEYTAADGSRQRPVMIHSAKLGSVERFIGVLTEHYAGAFPAW- 566

Query: 342 DSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             ++P ++ LI + +A D   +D   K+  R  +V  D+  D  G++I  + A  D +  
Sbjct: 567 --LSPVQVRLIPVAEAFDGYVKDVAAKLRERGVRVETDLSDDRFGKKI--RNASKDKI-- 620

Query: 401 PLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVINYASHR 441
           P  +I G + V    V  + R      G+  D ++E ++++   R
Sbjct: 621 PFTLIAGGEDVEAGAVSFRLRDGSQHNGVAVDRAVELIVSHIEQR 665


>gi|221122393|ref|XP_002164939.1| PREDICTED: similar to threonyl-tRNA synthetase, partial [Hydra
           magnipapillata]
          Length = 801

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G    + + + IR E N  G  E+  P + S  LW +SG +  Y   M  
Sbjct: 334 SPGSAFFLPKGAFIYNTLVSFIRSEYNNRGFQEVITPNMFSTKLWEQSGHWQHYATNMFS 393

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                ++  +  P +      +F +  +S+R LP  F    +  R+EL     G+ R R 
Sbjct: 394 FEVEKERFAL-KPMNCPGHCVMFNNRPRSWRELPLRFADFGVLHRNELSGTLTGLTRVRR 452

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 453 FQQDDAHIF 461



 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           I + E N  G  E+  P + S  LW +SG +  Y   M       ++  +  P +     
Sbjct: 486 IGKSEYNNRGFQEVITPNMFSTKLWEQSGHWQHYATNMFSFEVEKERFAL-KPMNCPGHC 544

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            +F +  +S+R LP  F    +  R+EL     G+ R R F   DA+ F
Sbjct: 545 VMFNNRPRSWRELPLRFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIF 593


>gi|219681500|ref|YP_002467885.1| threonyl-tRNA synthetase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471181|ref|ZP_05635180.1| threonyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254783512|sp|B8D8S6|SYT_BUCA5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219624343|gb|ACL30498.1| threonyl-tRNA synthetase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 642

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 151/398 (37%), Gaps = 54/398 (13%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GMI  H+KG   W+   +     +   +R +       E+  P L    +W +SG +D+Y
Sbjct: 262 GMIFWHNKG---WIIFNE-----LQNFVRVKLKEYKYEEVKTPLLIDKLIWKQSGHWDNY 313

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
              +      + +  I  P +      IF S +KSYR+LP    +     R+E      G
Sbjct: 314 KNAIFTTLSEHREYCI-KPMNCPGHVQIFNSRLKSYRDLPIRMAEFGSCHRNEPSGSLHG 372

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F   DA+ F  T E  +   N        ++     K I ++  + P   IG D
Sbjct: 373 LMRVRNFTQDDAHIF-CTREQVRSEINDCIKMIYDLYSTFHFKKILVKLSTRPEKRIGTD 431

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  L +  E                   D  D++  N +  ++ +   A      E
Sbjct: 432 ------SLWNESE------------------KDLSDMLIENHLSFEYQSGEGAFYGPKIE 467

Query: 266 KLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM-R 323
            +  DSL  N +     ++    FY   + S   S      + K   V +    +G++ R
Sbjct: 468 FILQDSLDRNWQCGTIQLD----FYLPLRLS---SFYINEKNEKKVPVIIHRAILGSIER 520

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE          P  ++P ++ +I+I     +     ++++ + S V   +  D 
Sbjct: 521 FIGILIEECSGN----LPTWLSPVQVVIISI---TDISSGYVKELFKKFSDVNIRIECDL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  +I G K  S  K+ +++R
Sbjct: 574 RNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNR 611


>gi|17987198|ref|NP_539832.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|256044731|ref|ZP_05447635.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564073|ref|ZP_05834559.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265991152|ref|ZP_06103709.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|22654120|sp|Q8YH89|SYT_BRUME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17982868|gb|AAL52096.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260154089|gb|EEW89181.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|263001936|gb|EEZ14511.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 658

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLQI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|294626197|ref|ZP_06704803.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599549|gb|EFF43680.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 634

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      V   +R+    +G  E+  P +    LW +SG +D+Y  
Sbjct: 256 LQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F   + SYR+LP  + +     R+E      G++
Sbjct: 316 AMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGIL 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   D + F L  +  +          L ++   G   I ++    P   +G D +
Sbjct: 375 RVRGFTQDDGHVFCLESQ-IESEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDAT 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A      V C  ++ + P                      A Y    + H   L
Sbjct: 434 WDKAESALRSALGV-CGVEWQELPGEG-------------------AFYGPKIEYH---L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++    ++    ++       G +Y    S        K H V +    +G+M     
Sbjct: 471 KDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQ-------KKHPVMLHRAIVGSMERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   H G    +P  +AP ++ + NI        D+  K    L+  G  V  D   E+
Sbjct: 524 ILIEHHAGA---FPSWLAPVQVVVANITDAQAEYVDSVRKT---LANQGFRVSADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     +   P  ++VG +   +  V ++ R
Sbjct: 578 IGYKIREHTMQRVPYLLVVGDREKENGAVAVRTR 611


>gi|33286920|gb|AAH55371.1| Threonyl-tRNA synthetase [Mus musculus]
          Length = 722

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/445 (20%), Positives = 177/445 (39%), Gaps = 65/445 (14%)

Query: 10  ILQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L+E  +  E A ++   +TG        H+ S G   +LP G    + +   IR E  +
Sbjct: 306 LLKEWEKFQEEAKNRDYRKTGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 365

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++  +  P +      +F    +
Sbjct: 366 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPR 424

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    +       K  + +L
Sbjct: 425 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFL 482

Query: 183 RIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           R  + +   S  +   + P    GD     I + +  E Q+             EN    
Sbjct: 483 RTVYSVFGFSFKLNLSTRPEKFLGD-----IEIWNQAEKQL-------------EN---- 520

Query: 241 DIISLNSIVEQWT------APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              SLN   E+W       A Y    D+   ++ D++    + +   ++    F    ++
Sbjct: 521 ---SLNEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF 570

Query: 295 SLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +L    T+   DG D    V +    +G++  + A++  ++ GK   WP  ++P ++ ++
Sbjct: 571 NL----TYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVV 623

Query: 353 NIKAHDQVCRDACEKIYARL--SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +      C +  +K+  +   +K   D   D  G  +  +   A L  +   ++VG K 
Sbjct: 624 PVGP---TCDEYAQKVRQQFHDAKFMADTDLDP-GCTLNKKIRNAQLAQYNFILVVGEKE 679

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVI 435
            +   V I+ R   +  + ++EE +
Sbjct: 680 KASGTVNIRTRDNKVHGERTVEETV 704


>gi|83647272|ref|YP_435707.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123753567|sp|Q2SDJ2|SYT_HAHCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83635315|gb|ABC31282.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 637

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/423 (20%), Positives = 161/423 (38%), Gaps = 67/423 (15%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H K+  + G+ H  + + G+  W   G      +   +R++  +    E+  P 
Sbjct: 237 EAEKRDHRKIGKKLGLFHMQEEAPGMVFWHSDGWTLYQVIEQYMRKQLRKHDYKEIKTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG ++ +  +M       D+     P +      +F   ++SYR+LP    
Sbjct: 297 VVERTLWEKSGHWEKFRDDMF-TTQSEDRDFAIKPMNCPCHVQVFNQGLRSYRDLPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  +    K F+ +L          
Sbjct: 356 EFGSCHRNEASGALHGLMRVRGFTQDDAHIF-CTEEQIQEEVGK-FIDFL---------- 403

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                          HE  V AD G +++     +     P +    D+I         W
Sbjct: 404 ---------------HE--VYADFGFSEII----YKLSTRPEKRVGSDEI---------W 433

Query: 253 TAPYAATSDVHNEK--LFDSLPENKRVSARGIE------VGHIFYFGT---KYSLP--MS 299
                A +D  + K   ++ LP         +E      +G ++  GT    +S+P  + 
Sbjct: 434 DKSEKALADALDAKGLPWEELPGEGAFYGPKVEFSLKDCLGRLWQCGTVQVDFSMPGRLG 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   +  +   V +    +G+      ++   ++G    +P  +AP +++++NI    
Sbjct: 494 AQYVSDEQVRKTPVMLHRAILGSFERFIGILIEHYEGA---FPSWLAPTQVAILNITDKQ 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D C+KI   L+  G  V  D   E+I  +     L   P   +VG K V    + I
Sbjct: 551 A---DYCKKIGEILNDKGFRVRLDLRNEKINYKIREHTLNRVPFLAVVGDKEVETQCLAI 607

Query: 419 KHR 421
           + R
Sbjct: 608 RTR 610


>gi|312077291|ref|XP_003141239.1| threonyl-tRNA synthetase [Loa loa]
 gi|307763596|gb|EFO22830.1| threonyl-tRNA synthetase [Loa loa]
          Length = 681

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/419 (19%), Positives = 164/419 (39%), Gaps = 65/419 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   W P G    +++   IR+E  + G  E+  P + ++ LW +SG ++ Y 
Sbjct: 294 FFHPLSPGSAFWYPKGAHIYNSLCNFIRKEYRKRGFTEVISPNMYNSKLWEQSGHWEHYS 353

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
             M ++ D   +     P +          H   Y ++P T  ++ L++ D     FGV+
Sbjct: 354 DNMFKI-DIEKETFGLKPMN-------CPGHCLMYSHMPRTHNELPLRYAD-----FGVL 400

Query: 151 RSRE--------FLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             ++        F   DA+ F   D   E   +  + +  +Y  +F      ++  R E 
Sbjct: 401 HRKKTVEEITIIFQQDDAHIFCRQDQVVEEIMNCIDFLKYAYNDVFGFTFKLNLSTRPEV 460

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAA 258
           G +G                            I + N+  D +  +LN+   +W      
Sbjct: 461 GYLGD---------------------------IETWNSAEDKLKEALNASGHKWELN-PG 492

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
               +  K+  ++ +  R   +   +   F    ++ L   + F     +   V +    
Sbjct: 493 DGAFYGPKIDITIQDALRRLHQCATIQLDFQLPIRFDL---SYFDENSERQRPVMIHRAL 549

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGC 377
           +G++  + A++  ++ GK   WP  ++P +  +I + ++ +   R    KIY    + G 
Sbjct: 550 LGSIERMTAILAENYGGK---WPFWLSPRQAKVITVHESQNDYGRVVQRKIY----EAGF 602

Query: 378 DVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +V +D D  + +  Q   A L  F   ++VG     +  V ++ R   +R ++ LE++I
Sbjct: 603 EVEFDADSSDTLNKQIRNAQLAQFNFILVVGPTEARNGTVNVRTRDNAVRGEIKLEDLI 661


>gi|291617247|ref|YP_003519989.1| ThrS [Pantoea ananatis LMG 20103]
 gi|291152277|gb|ADD76861.1| ThrS [Pantoea ananatis LMG 20103]
          Length = 642

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/398 (20%), Positives = 144/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D +
Sbjct: 375 RVRGFTQDDAHIF-CTEDQLRTEVNSCIRMVYDMYSTFGFEKILVKLSTRPEKRIGSDET 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
            +                            D    ++ N+I  ++     A      E  
Sbjct: 434 WD------------------------RAEEDLAAALNENNIEFEYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L+D L        R  + G +      +SLP  + AT+ G +       M    I G+M 
Sbjct: 470 LYDCLD-------RAWQCGTV---QLDFSLPKRLDATYVGENNDRQTPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP +  ++NI        +  E +  +L   G  V  D 
Sbjct: 520 RFIGILTEEFAG---FFPSWLAPMQAVVMNITDGQA---EYVETLTRKLQNAGIRVKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611


>gi|171910276|ref|ZP_02925746.1| prolyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 510

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 130/338 (38%), Gaps = 75/338 (22%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++  +  PT E ++   F   ++SYR+LP    Q     R E+RPR   +R+ EFL ++ 
Sbjct: 119 EEPFVIRPTSETIIGAAFARWVESYRDLPLLINQWANVMRWEMRPRL-FLRTAEFLWQEG 177

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           +        + H  ++  +   ++ H                   +  +F+         
Sbjct: 178 H--------TAHETSEEAMKEAKLMH------------------GVYEDFL--------- 202

Query: 221 VFCSKDFMDFP-IPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
               ++++  P IP E T+ +    +LN+        +   + V + K            
Sbjct: 203 ----RNYLAIPAIPGEKTERERFPGALNT--------FTVEAMVQDRK------------ 238

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              I+ G   + G  ++   +  F G D   H+    S+G+ + R++  ++ +  D  G 
Sbjct: 239 --AIQAGTSHFLGQNFAKAANIEFLGRDNLRHHAWTTSWGV-STRLIGTLLMAHADDDGA 295

Query: 339 IWPDSVAPFKISLINIK----AHDQVCRDACEKIYARLSKVG-----CDVFWDDMGEQIG 389
           + P  +AP +I ++ +       D V  DACE +   L           V  D      G
Sbjct: 296 VLPPRIAPTQIVILPVTPKPDTKDAVI-DACEALATTLRAHAFHGEPLRVHVDKRDIAGG 354

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           ++       G PL+V +G + ++   V +  R  G +E
Sbjct: 355 ARNWEWIKKGVPLRVEIGPRDITSRSVAVARRDRGPKE 392


>gi|159489080|ref|XP_001702525.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280547|gb|EDP06304.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  +S   + T++  D +  +V   S+G+   R +  +I +  D KG
Sbjct: 177 TGRGIQGATSHCLGQNFSKMFNITYEDDDRQKQHVWQNSWGL-TTRSLGVMIMTHADDKG 235

Query: 338 IIWPDSVAPFKISLINIKAHD------QVCRDACEKIYARLSKVGCDVFWDDMGEQI-GS 390
           ++ P  VAP ++ LI I          Q   D  +++   L   G  V  D       G 
Sbjct: 236 LVLPPRVAPKQVVLIPIPKASTAPEAVQAMLDKVDELTKALEDKGVRVVTDTRSNYTPGW 295

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++   +L G PL+V +G K + ++ V    R TG +E +   +V
Sbjct: 296 KYNHWELKGLPLRVELGPKDMDNAAVMTCRRDTGAKEVVPWADV 339



 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 41/88 (46%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   F   I+S+R+LP    Q     R E +     +RSREFL ++ 
Sbjct: 58  EKPIAIRPTSETVMYPYFSQWIRSHRDLPLRLNQWTNVVRWEFKYPTPFIRSREFLWQEG 117

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++   T E ++     +   Y  ++  L
Sbjct: 118 HTAFATQEEAEREVLDILELYRGVYEDL 145


>gi|15616745|ref|NP_239957.1| threonyl-tRNA synthetase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11134938|sp|P57225|SYT_BUCAI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25292947|pir||C84944 threonine-tRNA ligase (EC 6.1.1.3) [imported] - Buchnera sp.
           (strain APS)
 gi|10038808|dbj|BAB12843.1| threonyl-tRNA synthetase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 642

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 151/398 (37%), Gaps = 54/398 (13%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GMI  H+KG   W+   +     +   +R +       E+  P L    +W +SG +D+Y
Sbjct: 262 GMIFWHNKG---WIIFNE-----LQNFVRVKLKEYKYEEVKTPLLIDKLIWKQSGHWDNY 313

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
              +      + +  I  P +      IF S +KSYR+LP    +     R+E      G
Sbjct: 314 KNAIFTTLSEHREYCI-KPMNCPGHVQIFNSRLKSYRDLPIRMAEFGSCHRNEPSGSLHG 372

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F   DA+ F  T E  +   N        ++     K I ++  + P   IG D
Sbjct: 373 LMRVRNFTQDDAHIF-CTREQVRSEINDCIKMIYDLYSTFHFKKILVKLSTRPEKRIGTD 431

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  L +  E                   D  D++  N +  ++ +   A      E
Sbjct: 432 ------SLWNESE------------------KDLSDMLIENHLSFEYQSGEGAFYGPKIE 467

Query: 266 KLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM-R 323
            +  DSL  N +     ++    FY   + S   S      + K   V +    +G++ R
Sbjct: 468 FILQDSLDRNWQCGTIQLD----FYLPLRLS---SFYINEKNEKKVPVIIHRAILGSIER 520

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  +IE          P  ++P ++ +I+I     +     ++++ + S V   +  D 
Sbjct: 521 FIGILIEECSGN----LPTWLSPVQVVIISI---TDISSGYVKELFKKFSDVNIRIECDL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  +I G K  S  K+ +++R
Sbjct: 574 RNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNR 611


>gi|237747667|ref|ZP_04578147.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229379029|gb|EEO29120.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 635

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G+I  H+KG   W          V   +R      G  E+  P +    LW +SG +D+Y
Sbjct: 261 GLIFWHAKGWTIW--------QQVEQYMRRVYQENGYQEVKGPQILDRSLWEKSGHWDNY 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M      N +     P +      I+RS++ SYR LP  + +     R+E      G
Sbjct: 313 KENMFTTESEN-RIYALKPMNCPGHVQIYRSNLHSYRELPLRYGEFGQCHRNEPSGSLHG 371

Query: 149 VMRSREFLMKDAYSF 163
           +MR R F   D + F
Sbjct: 372 MMRVRGFTQDDGHIF 386


>gi|145353842|ref|XP_001421209.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581446|gb|ABO99502.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 448

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G     G  ++     TF    G+  YV   S+G+ + R++  ++ +  D  G+I
Sbjct: 186 KALQAGTSHNLGDNFAKAFDTTFLDDKGETQYVHQSSWGV-STRLIGGILMTHGDDSGLI 244

Query: 340 WPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVA 395
            P  +AP ++ ++ I   D   +    + + I + LS  G     D D  +  G +F   
Sbjct: 245 LPPRLAPIQVVVVPIWKKDEEKEAVMASVDSIISSLSNAGVRTHLDADQSKSPGWKFNQY 304

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++ G P+++ VG K V+     +  R
Sbjct: 305 EMKGVPIRIEVGPKDVAKGACVVARR 330


>gi|83748297|ref|ZP_00945322.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725029|gb|EAP72182.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 635

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    V   +R      G  E+  P +    LW  SG + +Y K
Sbjct: 255 LQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAGAGYSEVRTPQVMDRTLWEHSGHWQNY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +      IF   ++SYR+LP    +     R+E      G+M
Sbjct: 314 ENMFVTESEKREYAIKPMNCPGHVQIFNHGLRSYRDLPLRLAEFGACHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSF 163
           R R F+  DA+ F
Sbjct: 374 RVRGFVQDDAHIF 386


>gi|300703878|ref|YP_003745480.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071541|emb|CBJ42865.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 635

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    V   +R      G  E+  P +    LW  SG + +Y K
Sbjct: 255 LQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAGAGYSEVRTPQVMDRTLWEHSGHWQNY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + + +   +     P +      IF   ++SYR+LP    +     R+E      G+M
Sbjct: 314 ENMFVTESEKREYAIKPMNCPGHVQIFNHGLRSYRDLPLRLAEFGACHRNEPSGALHGLM 373

Query: 151 RSREFLMKDAYSF 163
           R R F+  DA+ F
Sbjct: 374 RVRGFVQDDAHIF 386


>gi|291327048|ref|ZP_06126787.2| threonine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311980|gb|EFE52433.1| threonine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 653

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/425 (20%), Positives = 155/425 (36%), Gaps = 50/425 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L + +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 241 AAYLLRLEEAAKRDHRKIGKQLDLYH--MQEEAPGMAFWHNDGWTIFRELETFVRTKLKA 298

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +D+Y   M   +  N +  +  P +      IF   +K
Sbjct: 299 YNYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCV-KPMNCPGHVQIFNQGLK 357

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T E              
Sbjct: 358 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQILSEVTSCIEMIY 416

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++   G + I ++  + P   IG D   E    A+        SK       P E   +
Sbjct: 417 DVYATFGFEKIVVKLSTRPEKRIGTD---EMWDRAEEDLANALKSKGIEFEYQPGEGAFY 473

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                       L+D L        R  + G +      + LP  
Sbjct: 474 GPKIEFT--------------------LYDCLD-------RAWQCGTV---QLDFFLPGR 503

Query: 298 MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           ++A++ G + +    V +    +G++     ++   + G    +P  +AP ++ ++NI  
Sbjct: 504 LTASYVGENNERIVPVMIHRAVLGSLERFIGILTEEYAG---FFPTWLAPQQVVVMNITD 560

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++ ++L  VG     D   E+IG +     L   P  ++ G K V   KV
Sbjct: 561 SQA---DYVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKV 617

Query: 417 EIKHR 421
            ++ R
Sbjct: 618 AVRTR 622


>gi|312143811|ref|YP_003995257.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904462|gb|ADQ14903.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 652

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +  +G+    P G K +  +   + +E+ + G      P +  +DL+  SG ++ Y  
Sbjct: 257 VDEIGQGLPLLKPKGAKVVQILQRFVEDEEEKRGYQITKTPFMAKSDLYEISGHWEHYKD 316

Query: 92  EMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            M  L D  ++D  M   P        I+ S ++SYR+LP  + +    FR+E      G
Sbjct: 317 GMFILGDEEKDDNLMALRPMTCPFQFQIYNSKLRSYRDLPIRYSETSSLFRNEASGEMHG 376

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSY 174
           ++R R+F + + +   +TPE  +  +
Sbjct: 377 LIRLRQFTISEGHLI-VTPEQLEEEF 401


>gi|228908133|ref|ZP_04071981.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228851551|gb|EEM96357.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 640

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M  + + G+  +LP GQ   + + A +R  Q      E+  P + + ++W  SG +
Sbjct: 254 LELFMFSEEAPGMPFYLPKGQMIRNELEAFLRGIQKEYNYQEVRTPFMMNQEVWERSGHW 313

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             Y K+ +  ++ ++K+    P +      +F++ + SYR LP    +     R E    
Sbjct: 314 GHY-KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGA 372

Query: 147 F-GVMRSREFLMKDAYSFDLTPE 168
             G++R R F   DA+ F +TP+
Sbjct: 373 LNGLLRVRTFCQDDAHLF-VTPK 394


>gi|218782046|ref|YP_002433364.1| threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|226701455|sp|B8FN26|SYT_DESAA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218763430|gb|ACL05896.1| Threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 636

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 155/393 (39%), Gaps = 67/393 (17%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
            GM   H++G+  W        + + A  REE  + G +E   P + +  LW  SG +++
Sbjct: 256 AGMPFFHARGMELW--------NALLAYWREEHKKAGYVETKTPIMLNKSLWERSGHWEN 307

Query: 89  YGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           Y + M   L +  D A+   P +      ++++   SY +LP    +I L  R EL    
Sbjct: 308 YRENMYTSLIEDFDYAI--KPMNCPGGMLLYKTKHHSYNDLPIRAGEIGLVHRHELSGVL 365

Query: 148 -GVMRSREFLMKDAYSFDLTPE-------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            G+ R R F   DA+ F +T E       G      +M+ ++   FH L L + P +   
Sbjct: 366 SGLFRVRAFHQDDAHIF-MTEEMIEDEILGVLQLVERMYSTFGLGFH-LELSTRPEKT-- 421

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             IG D   E      T   +    K   D+ I   +  F                Y   
Sbjct: 422 --IGTDEQWE----KATEGLRAALDKSGRDYKINEGDGAF----------------YGPK 459

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSY 317
            D+H   + D+L        R  + G I       +LP     T+ GAD + H   M   
Sbjct: 460 IDIH---IKDAL-------GRTWQCGTI---QLDMNLPERFDLTYVGADNQRHRPVMIHR 506

Query: 318 GI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            I G++     ++   + GK  +W   ++P +  ++ +  +D V   A E + ARL + G
Sbjct: 507 VIYGSIERFLGILIEHYAGKFPLW---LSPCQAVVLAM--NDDVAGYAKE-VKARLEEAG 560

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             +  D   E I  +   A L   PL + VG K
Sbjct: 561 LRMEIDLRAESINKKVRDAQLSKIPLMLTVGGK 593


>gi|225560803|gb|EEH09084.1| threonyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 750

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K  + + A++R E  + 
Sbjct: 293 MQEHLKFLEEAEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQALLRSEYRKR 352

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 353 GYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGHRERS 411

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP       +  R+E      G+ R R+F   D + F
Sbjct: 412 YRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 451


>gi|299135910|ref|ZP_07029094.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298602034|gb|EFI58188.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 680

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/416 (19%), Positives = 147/416 (35%), Gaps = 58/416 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +R E  R G   +  P +   +LW  SG    Y   M    
Sbjct: 297 GLIFWHPKGGLIRKTMEDWMRAECVRRGYNLVVTPHIMRRELWKISGHEGYYSDNMYPPM 356

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +D      P +      I+++  KSYR+LP  + ++   +R E      G++R R F 
Sbjct: 357 ELDDAEYRLKPMNCPGHILIYKNSPKSYRDLPVRYAELGNVYRYERSGTMHGLLRVRGFT 416

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  TP+                                     +  E +   + 
Sbjct: 417 QDDAHIF-CTPD------------------------------------QIEDEVVACIEF 439

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK--LFDSLPEN 274
            ++ V  +  F DF +     D           + W     +       K   F  +P  
Sbjct: 440 AQS-VLTTFGFADFKVELSTWDPKKPQDYTGSADHWATAINSLKTALGRKNIPFVEIPGE 498

Query: 275 KRVSARGIEV------GHIFYFGT-KYSLPMSATFK----GADGKDHYVQMGSYGI-GAM 322
                  I+V      G ++   T ++   + A F+    G DG+ H   M    + G++
Sbjct: 499 AAFYGPKIDVKLVDVLGRLWQLSTVQFDFNLPARFELEYIGEDGERHRPVMVHRALFGSV 558

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                V+   + G   +W   +AP ++ L+ I     +     E + ARL   G  V  D
Sbjct: 559 ERFFGVLIEHYAGAFPMW---LAPVQVGLVPISNEKHLAY--AESVKARLEAAGLRVELD 613

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
               ++ ++     L  FP  +++G K  +   V ++ R  G    ++++E I  A
Sbjct: 614 GGNGKMNAKIRDFGLQKFPFILVLGDKEAASDSVSVRVRAKGDEGSVTVDEFIARA 669


>gi|71991342|ref|NP_001022777.1| Prolyl tRNA Synthetase family member (prs-1) [Caenorhabditis
           elegans]
 gi|459009|gb|AAA50660.1| Prolyl trna synthetase protein 1, isoform a [Caenorhabditis
           elegans]
          Length = 581

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 129/332 (38%), Gaps = 67/332 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   ++  ++S+R+LP    Q     R E +     +R+REFL ++ ++    P
Sbjct: 195 PTSETVMYPSYKKWVQSHRDLPIKLNQWCNVVRWEFKHPTPFLRTREFLWQEGHTAFANP 254

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++    ++   Y  ++    L +IP                +V     E + F   DF
Sbjct: 255 ADAEKEVFQILDLYAGVY--TDLLAIP----------------VVKGRKSEKEKFAGGDF 296

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              + VE + A                       + RGI+    
Sbjct: 297 ------------------TTTVEAYVA----------------------CNGRGIQGATS 316

Query: 288 FYFGTKYSLPMSATFK--GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            + G  +S     +++    +G+  +    S+G+ + R + A++    D KG++ P  VA
Sbjct: 317 HHLGQNFSKMFDISYEDPAKEGERAFAWQNSWGL-STRTIGAMVMIHGDDKGLVLPPRVA 375

Query: 346 PFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGF 400
             ++ ++ +     + Q   DA +K+   L   G      D+ E    G +F   +L G 
Sbjct: 376 AVQVIVVPVGFKTENKQSLFDAVDKVTKDLVADGVKAE-HDLRENYNAGWKFNHWELKGV 434

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           P++  VG   ++ ++V    R  G ++ +SLE
Sbjct: 435 PIRFEVGPNDLAKNQVTAVIRHNGEKKQLSLE 466


>gi|187918575|ref|YP_001884138.1| threonyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|238689297|sp|B2S162|SYT_BORHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119861423|gb|AAX17218.1| threonyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 583

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/412 (18%), Positives = 152/412 (36%), Gaps = 42/412 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G +    +    REE  + G   +  P +  + LW  SG  D Y + M    
Sbjct: 205 GLIFFHPNGARIRAIIEDFWREEHFKNGYDVLFTPHIGKSCLWETSGHLDFYKESMFEKM 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G MR R F 
Sbjct: 265 EMDKSNYYVKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGTMRVRGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+      E  K    ++    L ++++ G   +     + P               
Sbjct: 325 QDDAHII-CAYEQVKSEVQEVLRFALYMWNQFGFADLKAYLSTKP--------------- 368

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +    KD  +  +        D+     I E   A Y    D+   K+ DSL    +
Sbjct: 369 --EKAVGDKDDWEMSVKVLEEALIDLNIAYDIDEGGGAFYGPKIDL---KIIDSLGREWQ 423

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSH 333
           +S    +          ++LP     T+   DGK+    M     +G++     ++   +
Sbjct: 424 MSTIQFD----------FNLPERFKMTYTAEDGKEKRPFMIHRALLGSIERFFGILVEHY 473

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQF 392
            G   +W   +AP ++ +I +   + V  +   +I +     G  +  D D   ++ ++ 
Sbjct: 474 GGAFPVW---LAPLQVIIIPV---NNVVEEYALEILSLFKNEGIRIKLDNDCNMRMNAKI 527

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                   P   I+G K V + K+ I+ R       + L+E + +   +  N
Sbjct: 528 RQYQSKKVPYMFIIGEKEVVEGKISIRTRTNDQINGLELKEALEFVRLKVKN 579


>gi|94499191|ref|ZP_01305729.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94428823|gb|EAT13795.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 638

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 156/411 (37%), Gaps = 55/411 (13%)

Query: 30  GMIHQHSKG--IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
           GM+  HSKG  IY+ L       D +   + E Q      E+  P +    +W +SG +D
Sbjct: 262 GMVFWHSKGWTIYNILE------DYMRKKLVEYQYE----EVRAPMVMDVSMWEKSGHWD 311

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            Y ++ +   +   +     P +      IF   +KSYR+LP+   +  +  R+E     
Sbjct: 312 KY-QDNIFATESEKRTYAVKPMNCPGHLQIFNQGLKSYRDLPYRMAEFGIVHRNEPSGSL 370

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-KSIPMRAESGPIGGD 205
            G+MR R F   DA+ F  T E       K       ++   G  +++ ++  + P    
Sbjct: 371 HGLMRVRSFTQDDAHVF-CTEEQILEEVTKCIQMVFDVYKDFGFDQNLSVKLSTRPEKRI 429

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            S E    A+ G      + + +D+ I      F                Y    +    
Sbjct: 430 GSDEIWDKAEKGLADALKANE-LDYEIQEGEGAF----------------YGPKIEF--- 469

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAM 322
            LFD L        R  + G I      +S+P  + A +   +G      M    I G++
Sbjct: 470 TLFDCLD-------RAWQCGTI---QLDFSMPGRLGAQYVDENGDRQTPVMIHRAILGSL 519

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++   + G    W   +AP +  ++NI  +     D  +K+   L+K G  V  D
Sbjct: 520 ERFIGILIEHYAGALPTW---LAPTQAMIMNITDNQA---DYVKKVQQTLAKQGFRVDSD 573

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
              E+IG +     L   P  ++ G K V+   V ++ R       MSLE+
Sbjct: 574 LRNEKIGFKIREHTLQKVPYLLVTGDKEVASDAVAVRTRSGEDLGTMSLED 624


>gi|301779664|ref|XP_002925249.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Ailuropoda melanoleuca]
          Length = 890

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/416 (20%), Positives = 157/416 (37%), Gaps = 57/416 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE +R    E+  P + ++ LW  SG +  Y + 
Sbjct: 503 HDLSPGSCFFLPRGAFIYNTLMDFIREEYHRRNFTEVLSPNMYNSRLWETSGHWQHYSEN 562

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D         P +      IF    +S+R +P  F    +  R+EL     G+ R
Sbjct: 563 MFTF-DIEKDTFALKPMNCPGHCLIFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 621

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
            R F   DA+ F  T E  +   N        ++   G  S  +   + P    G++   
Sbjct: 622 VRRFQQDDAHIF-CTVEQIEEEINGCLQFLQSVYSTFGF-SFQLNLSTRPENFLGEVE-- 677

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              L D  E Q+      ++F  P +    D             A Y    D+   K+ D
Sbjct: 678 ---LWDEAEKQL--QNSLVEFGKPWKMNPGDG------------AFYGPKIDI---KIKD 717

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           ++    + +   ++      F   Y        K  D K + V +    +G++  + A++
Sbjct: 718 AIGRYHQCATIQLDFQLPIRFNLTY------VSKDGDDKRNPVIIHRAILGSVERMIAIL 771

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD------- 382
             ++ GK   WP  ++P ++ +I +          CEK   ++S      F++       
Sbjct: 772 SENYGGK---WPFWLSPRQVMVIPVGP-------TCEKYALQVS----SAFFEEGFMADV 817

Query: 383 --DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             D    +  +   A L  +   ++VG K  +++ V ++ R   I  ++S+   I+
Sbjct: 818 DLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNVRTRDNKIHGEISVTSAID 873


>gi|254489788|ref|ZP_05102983.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224464873|gb|EEF81127.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 673

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 7/184 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G   W   G + L  + A +R  Q + G IE++ P +    LW  SG + +Y   
Sbjct: 267 QEEAPGSVFWHHKGWQILQELIAYLRRRQQQEGYIEVNSPDVMDRSLWETSGHWQNYRDH 326

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      + +     P +      ++R ++ SYR+LP    +     R E      G++R
Sbjct: 327 MFTTETADGRFFALKPMNCPGSVLLYRQNLTSYRDLPIRMSEFGKVHRYEPSGTLHGLLR 386

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKM-FVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
            R F   DA+ +    +      + + F+  L ++ +LG   I ++  + P   IG D +
Sbjct: 387 VRHFTQDDAHIYCTQSQMQDECMSAIRFI--LDVYDQLGFHDIKIKLSTRPEHRIGTDET 444

Query: 208 HEFI 211
            + +
Sbjct: 445 WDLL 448


>gi|71895375|ref|NP_001026618.1| threonyl-tRNA synthetase, cytoplasmic [Gallus gallus]
 gi|53128235|emb|CAG31282.1| hypothetical protein RCJMB04_4k14 [Gallus gallus]
          Length = 711

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 163/415 (39%), Gaps = 57/415 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y + 
Sbjct: 324 HELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVTPNIFNSKLWMTSGHWQHYSEN 383

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 384 MFSF-EVEKEIFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTR 442

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
            R F   DA+ F    +  +    K  + +LR  + +   S  +   + P    GD    
Sbjct: 443 VRRFQQDDAHIFCSVEQIEEEI--KSCLQFLRAVYDVFGFSFKLNLSTRPEKYLGD---- 496

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVH 263
            I + +  E Q+             EN       SLN   E+W       A Y    D+ 
Sbjct: 497 -IEVWNRAEKQL-------------EN-------SLNDFGEKWELNPGDGAFYGPKIDI- 534

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGA 321
             ++ D++    + +   ++    F    +++L    TF   DG D    V +    +G+
Sbjct: 535 --QIKDAIGRYHQCATIQLD----FQLSIRFNL----TFVSHDGNDKTRPVIIHRAILGS 584

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +    G     
Sbjct: 585 VERMIAILTENYGGK---WPLWLSPQQVMVVPVGP---TCDEYAQKVRQQFHDAGLMADI 638

Query: 382 D-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D D G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++ + +
Sbjct: 639 DVDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTIADTV 693


>gi|26326983|dbj|BAC27235.1| unnamed protein product [Mus musculus]
          Length = 722

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/415 (20%), Positives = 160/415 (38%), Gaps = 55/415 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 334 FHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSE 393

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       ++  +  P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 394 NMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLT 452

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD   
Sbjct: 453 RVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD--- 507

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 508 --IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKIDI 545

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              ++ D++    + +   +      YF       ++      D K   V +    +G++
Sbjct: 546 ---QIKDAIGRYHQCATIQL------YFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSV 596

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCDVF 380
             + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D  
Sbjct: 597 ERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMADTD 650

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D  G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++EE +
Sbjct: 651 LDP-GCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVEETV 704


>gi|325263251|ref|ZP_08129986.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324031644|gb|EGB92924.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 653

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 5/159 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P G K +  +   I  EE N  G I    P +  +DL+  SG +D Y   M  
Sbjct: 259 QGLPLLMPKGAKIIQTLQRWIEDEEDNNWGYIRTKTPLMAKSDLYQISGHWDHYKDGMFV 318

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      ++   P        ++++  KSYR+LP  + +    FR+E      G+ R 
Sbjct: 319 LGDEETNKEVFALRPMTCPFQYYVYKASQKSYRDLPLRYSETSTLFRNEDSGEMHGLTRV 378

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           R+F + + +   + P+     +        +    LGL+
Sbjct: 379 RQFTISEGHLI-VRPDQMVEEFKGCLALAKKCLTTLGLQ 416


>gi|300767159|ref|ZP_07077071.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300494978|gb|EFK30134.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 688

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D++ +SG +D Y ++M    
Sbjct: 302 GLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPM 361

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D   +   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 362 DMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREM 421

Query: 156 LMKDAYSF 163
            + D ++F
Sbjct: 422 TLNDGHTF 429



 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 302 FKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHD 358
           + GADG++H   M   G +  M    A +   + G    W   +AP ++++I  N  AH 
Sbjct: 543 YVGADGEEHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPKQVTIIPVNNGAHG 599

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  E +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V +
Sbjct: 600 AYA----ETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSV 655

Query: 419 K 419
           +
Sbjct: 656 R 656


>gi|20429011|emb|CAC79651.1| threonyl-tRNA synthetase [Oryza sativa Japonica Group]
          Length = 531

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/441 (19%), Positives = 177/441 (40%), Gaps = 47/441 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 122 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 177

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y KE + + +   +     P +      +F
Sbjct: 178 QQYRDRGYQEVLSPNIYNMQLWETSGHAANY-KENMFVFEIEKQEFGLKPMNCPGHCLMF 236

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F    +        +
Sbjct: 237 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRESQIKDEVKAVL 296

Query: 178 -FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            F++Y  ++   G K  + +        GD     I   +  E Q+  ++   +F  P +
Sbjct: 297 DFINY--VYEIFGFKYELELSTRPEKYLGD-----IETWNKAEQQL--TEALNEFGKPWQ 347

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             + D             A Y    D+    +FD+L    + +   ++      F   YS
Sbjct: 348 INEGDG------------AFYGPKIDI---GVFDALKRKFQCATLQLDFQLPLRFKLTYS 392

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               A        +  V +    +G++  + A++   ++GK   WP  ++P +  + +I 
Sbjct: 393 AEDEAKL------ERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSIS 443

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           ++     +  +++  R+ + G  V  D+    I  +   A L  F   ++VG++     +
Sbjct: 444 SNSV---EYAKQVRVRIHEAGFHVAIDETDRTIQKKVREAQLAQFKYILVVGAQEAETGQ 500

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           V ++ R       +S++++I 
Sbjct: 501 VSVRVRDKAELATVSIDDIIT 521


>gi|18977723|ref|NP_579080.1| threonyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|22654114|sp|Q8U176|SYT_PYRFU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18893458|gb|AAL81475.1| threonyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 625

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 129/325 (39%), Gaps = 50/325 (15%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SYRNLP   Y++ +  FR E R    G+ R R F M D ++     E +K  + K F   
Sbjct: 311 SYRNLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDIEQAKDEFKKQFKLS 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
           + +   +GL                        D  E  +  ++DF +     E+ DF  
Sbjct: 371 MEVLGGVGLTP----------------------DDYEVAIRFTEDFWN-----EHKDFII 403

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               +I    ++E W   +            D+L +   +S   I+V +   FG      
Sbjct: 404 ELVKLIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFGI----- 458

Query: 298 MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESS----HDGKGIIWPDSVAPFKISL 351
              T+   +G++ Y + +     GA+ RV+ A++E       +GK  ++P  ++P ++ +
Sbjct: 459 ---TYYDENGEEKYPLILHCSPSGAIERVMYAILEKQAKLMQEGKKPMFPLWLSPIQVRV 515

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +        D    +  ++      V  DD  E++  +   A+    P  V+VG K  
Sbjct: 516 IPVSKE---YLDYALYVAGKIEGARIRVDVDDEDERLSKKIRRAEKEWIPYIVVVGEKEK 572

Query: 412 SDSKVEIKHRLTGIREDMSLEEVIN 436
               + ++ R  G + +  +EE+I 
Sbjct: 573 ETGTITVRRREDGKQYETRIEELIK 597


>gi|289582184|ref|YP_003480650.1| prolyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531737|gb|ADD06088.1| prolyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 493

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 131/346 (37%), Gaps = 76/346 (21%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           WV  G +D   +   RLA R        PT E ++        +S+R+LP    Q     
Sbjct: 97  WVTHGGHDELEE---RLAVR--------PTSESIIAPFMADWTRSHRDLPLRLNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E        R++EF+ ++ ++   T E +          Y +++    + +IP+    
Sbjct: 146 RWEATETKPFFRTKEFMWQEGHTAHATDESAWEEVWTRLDQYEKVYEE--VLAIPVLRGK 203

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P      H+    ADT                           ++ +++    +   AT
Sbjct: 204 KP-----EHDKFPGADT-------------------------TTTVEALMPDGKSVQGAT 233

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           S  HN                          G  ++     +F   D ++      S+G+
Sbjct: 234 S--HN-------------------------LGQSFAEAFDISFVDEDEEERTAYTTSWGL 266

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE---KIYARLSKVG 376
            + R + A+I +  D +G++ P ++AP +++++ I   ++   D  E    I   L + G
Sbjct: 267 -SWRALGALIMTHSDDQGLVLPPTIAPTQVAIVPI-WQEETKADVLEYSQNIADELEEAG 324

Query: 377 CDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             V  DD  E+  G +F   +L G PL++ +G   V D +V + HR
Sbjct: 325 FSVELDDRDERNPGFKFNEHELNGVPLRLEIGPYEVEDEEVTLVHR 370


>gi|237808486|ref|YP_002892926.1| threonyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259516783|sp|C4LFH3|SYT_TOLAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237500747|gb|ACQ93340.1| threonyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 642

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 147/397 (37%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++       E+  P +    LW  SG +D Y  
Sbjct: 256 MQEEAPGMVFWHNDGWIIFRELETFIRQKLREYDYEEVKGPFMMDRVLWERSGHWDKYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F    +        + + Y   +   G K+I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIFCAENQIQDEVSACIRMVY-DTYSTFGFKNIAVKLSTRPEKRIGSD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       + +   +   N +FD    L      +  P    +      L
Sbjct: 432 ----EMWDRAE-------EALSAALKHNNIEFD----LQPGEGAFYGPKIEFT------L 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + AT+ G D   H   M    I G+M  
Sbjct: 471 HDCLD-------RAWQCGTV---QLDFALPGRLGATYVGEDNDRHVPVMIHRAILGSMER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G   +W   +AP +  ++NI  +     D  +++   L++ G     D  
Sbjct: 521 FIGILTEETAGYFPLW---LAPLQAVVMNITDNQA---DYVKEVVNTLNESGIRAKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E+IG +     L   P  ++ G K +   ++ ++ R
Sbjct: 575 NEKIGFKIREHTLKRVPYMLVCGDKEMEAGEIAVRTR 611


>gi|254411303|ref|ZP_05025080.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196181804|gb|EDX76791.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 609

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   +++EQ + G   +  P +   +L+  SG +  Y +++  + 
Sbjct: 224 GLPLWTPKGTILRSTLEDFLKQEQIKRGYQPVVTPHIGRVELFKTSGHWQKYKEDLFPMM 283

Query: 98  DRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             ++ +  +    +      I++  ++SYR+LP    +    +R E      G+ R R F
Sbjct: 284 GESEAEGFVLKAMNCPFHVQIYKHELRSYRDLPMRLAEFGTVYRYEQSGELGGLTRVRGF 343

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              DA+ F +TPE     + ++    L +F+ LGL+    R
Sbjct: 344 TQDDAHLF-VTPEQLDDEFLRVVDLTLSVFNTLGLQDFKAR 383


>gi|13435498|gb|AAH04621.1| Tars protein [Mus musculus]
          Length = 457

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/418 (20%), Positives = 165/418 (39%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 68  FFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 127

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       ++  +  P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 128 ENMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 186

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 187 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 242

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + +  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 243 ---IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKID 279

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 280 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 328

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 329 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 382

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D   D  G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++EE +
Sbjct: 383 DTDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVEETV 439


>gi|28378228|ref|NP_785120.1| threonine--tRNA ligase 1 [Lactobacillus plantarum WCFS1]
 gi|38258333|sp|Q88WU9|SYT_LACPL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28271063|emb|CAD63968.1| threonine--tRNA ligase 1 [Lactobacillus plantarum WCFS1]
          Length = 654

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D++ +SG +D Y ++M    
Sbjct: 268 GLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPM 327

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D   +   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 328 DMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREM 387

Query: 156 LMKDAYSF 163
            + D ++F
Sbjct: 388 TLNDGHTF 395



 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 302 FKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHD 358
           + GADG++H   M   G +  M    A +   + G    W   +AP ++++I  N  AH 
Sbjct: 509 YVGADGEEHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPKQVTIIPVNNGAHG 565

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  E +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V +
Sbjct: 566 AYA----ETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSV 621

Query: 419 K 419
           +
Sbjct: 622 R 622


>gi|312217649|emb|CBX97596.1| hypothetical protein [Leptosphaeria maculans]
          Length = 829

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G    LP G      + A +R +  + G  E+  P +    LW +SG + +Y ++M 
Sbjct: 113 YSPGSPLLLPNGAYVFQKLQAFLRAQYPQFGFEEVITPIIYKKSLWEKSGHWQNYAEDMF 172

Query: 95  RLADRNDKAMI----------YG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            +  R   A I          +G  P +      +FR  + SYRNLP  +       R+E
Sbjct: 173 SVQGRGATAEIPQAEAEDNGEFGLKPMNCPGHCILFRDKVMSYRNLPVRYADFSALHRNE 232

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
           +     G+ R R F   DA+ F
Sbjct: 233 ISGALTGLTRVRRFHQDDAHIF 254


>gi|332799217|ref|YP_004460716.1| Prolyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696952|gb|AEE91409.1| Prolyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 478

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G     G  ++     TF   DG+  YV   S+GI   R++ A++    D +G+
Sbjct: 223 GRALQAGTSHNLGQHFAKAYDITFLDQDGQLKYVWQTSWGI-TTRLIGAIVMVHGDDRGL 281

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIYARL-SKVGCDVFWDDMGEQI-GSQFAVA 395
             P ++AP +  ++ I     ++  +   +I+ +L S+V  ++  DD  E   G +F   
Sbjct: 282 KIPPTIAPIQAVIVPIFGRQTELVLNKTNEIFTKLKSEVRIEL--DDRDEYTPGWKFNEW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           ++ G P+++ +G K +   +V +  R TG +  +S  E++
Sbjct: 340 EMRGVPVRIEIGPKDIQRQQVVLVRRDTGEKFTVSESELL 379


>gi|302854330|ref|XP_002958674.1| hypothetical protein VOLCADRAFT_84558 [Volvox carteri f.
           nagariensis]
 gi|300255999|gb|EFJ40277.1| hypothetical protein VOLCADRAFT_84558 [Volvox carteri f.
           nagariensis]
          Length = 446

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 3/144 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++ G     GT ++      +   + K H+V   S+G+ + RV+  +I +  D KG+ 
Sbjct: 186 RALQAGTSHNLGTNFAKAFGTQYLNRESKRHFVHQTSWGV-STRVIGGIIMTHGDDKGLR 244

Query: 340 WPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            P  +AP +  +I I  K  D+V  +   +  A  +KV       D  +  G ++   ++
Sbjct: 245 LPPRLAPVQAVIIPIVKKEEDRVPVNEAAQRLAEAAKVAGIRIDSDERQTPGWKYNYWEM 304

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
            G P++V VG K V         R
Sbjct: 305 RGVPVRVEVGPKDVQSGTCVTARR 328


>gi|194223978|ref|XP_001498225.2| PREDICTED: threonyl-tRNA synthetase [Equus caballus]
          Length = 722

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 164/417 (39%), Gaps = 59/417 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 334 FHELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVTPNIYNSRLWMTSGHWQHYSE 393

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 394 NMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRMADFGVLHRNELSGALTGLT 452

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD   
Sbjct: 453 RVRRFQQDDAHIFCAIEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD--- 507

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 508 --IEVWNQAEKQL-------------EN-------SLNEFGEKWVLNPGDGAFYGPKIDI 545

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    TF   DG D    V +    +G
Sbjct: 546 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TFVSHDGDDKKRPVIVHRAILG 594

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCD 378
           ++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D
Sbjct: 595 SVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMVD 648

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           V  D  G  +  +   A L  +   ++VG K  +   V I+ R   +  + +L E I
Sbjct: 649 VDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRTRDNKVHGERTLSETI 704


>gi|322495387|emb|CBZ30691.1| putative threonyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 787

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   WLP G +  + +   +R++    G  E+  P + S+ LW+ SG ++ Y  
Sbjct: 300 FHEVSPGSAFWLPHGARIYNTLVEFLRKKYRCCGFQEVISPNMYSSKLWMVSGHWEKYAD 359

Query: 92  EML-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     ++ D  +   P +      +F S   SY+ LP  +    +  R+EL     G+
Sbjct: 360 NMFCTKCEKEDFGL--KPMNCPGHCIMFASQPHSYKELPIRYADFGVLHRNELSGALTGL 417

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 418 TRVRRFQQDDAHIF 431


>gi|302389962|ref|YP_003825783.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200590|gb|ADL08160.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
          Length = 637

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    + +    R+E  + G  E+  P + + +LW  SG +D Y  
Sbjct: 258 MHEEGPGFPFFHPKGMVLWNTLIDFWRKEHQKRGYQEIKTPIILNEELWKRSGHWDHYKT 317

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      + +     P +      +++S + SYR LP    ++ L  R EL     G+M
Sbjct: 318 NMY-FTQIDGEGYAIKPMNCPGGILVYKSDVHSYRELPLKLAELGLVHRHELSGVLHGLM 376

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ +
Sbjct: 377 RVRSFTQDDAHIY 389



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 301 TFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H   M    I G++     ++   + G   +W   +AP ++ ++ I    +
Sbjct: 497 TYIGPDGEKHRPVMIHRTIFGSLERFIGILIEHYAGAFPVW---LAPIQVKVLPI---SE 550

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+ A L      V  D+  E+IG +   A L   P  +IVG K  ++  V ++
Sbjct: 551 KFMDYARKVTAELENSDIRVELDERNEKIGYKIREAQLQKIPYMLIVGEKEAAEGTVSVR 610

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G     SL++ I   + R  N 
Sbjct: 611 VREKGDVGMKSLKDFIEEVTTRIKNK 636


>gi|194477315|ref|YP_002049494.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
 gi|171192322|gb|ACB43284.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
          Length = 599

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 146/393 (37%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 219 GLVFWHPNGARIRLLIEDFWRQSHLEAGYELLYTPHIADIRLWKTSGHLDFYSESMFSPM 278

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 279 QVDEREYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 337

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       ++     RI          +   + P   IGGD   +   
Sbjct: 338 TQDDAHIFCL-PEQIGSEVLEVLNLTERILSAFDFTKYEINLSTRPEKFIGGD---DVWD 393

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +   +K++        N   D         E   A Y    D+   K+ D++ 
Sbjct: 394 LATNGLVEALNAKNW--------NYKID---------EGGGAFYGPKIDL---KIKDAIG 433

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++      F  +Y         G+DG      M    I G++     V+  
Sbjct: 434 RTWQCSTIQLDFNLPERFNIEYV--------GSDGSRQRPIMIHRAIFGSLERFFGVMIE 485

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S  G    W   +AP +I L+ +   D+V   A E++ ++L   G     D  G+++G  
Sbjct: 486 SCAGDFPFW---LAPEQIRLLPVT--DEVITYA-EELLSQLKIAGVRASIDRTGDRLGKL 539

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               +    P+  +VG+K        ++ R  G
Sbjct: 540 IRNGEQKKIPILAVVGAKEAEVGGASLRSRYEG 572


>gi|253996955|ref|YP_003049019.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983634|gb|ACT48492.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 635

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      V   +R+     G  E+  PT+    LW +SG + +Y   M  
Sbjct: 259 APGMVFWHPRGWSIWQEVEQYMRQMFKSFGYQEVRTPTVMDKTLWEKSGHWQNYRDNMFV 318

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
            +  N +  +  P +      IF + + SYR+LP    +     R+E      G+MR R 
Sbjct: 319 TSSENREYAV-KPMNCPGHVQIFNNQLHSYRDLPLRLAEFGSCHRNEPSGSLHGLMRVRG 377

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 378 FTQDDAHIF 386


>gi|254503680|ref|ZP_05115831.1| threonyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439751|gb|EEE46430.1| threonyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 703

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 18/213 (8%)

Query: 5   KYFLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H KL     + H  +   G+  W P G     N+ A  R  +
Sbjct: 284 KGYLHMLEE----AEKRDHRKLGREMNLFHFQEEGPGVVFWHPKGWDIFQNLIAYKRR-R 338

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM--LRLAD---RNDKAMIYGPTHEEVMTD 116
            +    E++ P +    LW  SG +  Y   M  ++ AD    +D+     P +     +
Sbjct: 339 LKDDYKEVNAPQVLHTSLWETSGHWAWYKDNMFSVQCADPESEDDRIFALKPMNCPGHVE 398

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       
Sbjct: 399 IFKHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEEQMAEECL 457

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           K+    L ++   G + I ++  + P   +G D
Sbjct: 458 KINDLILSVYEDFGFEEIVVKLSTRPEKRVGSD 490


>gi|145634324|ref|ZP_01790034.1| threonyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268304|gb|EDK08298.1| threonyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 643

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/394 (20%), Positives = 146/394 (37%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T +  +            I+   G  +I ++  + P     S E 
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSDEM 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+ G        + +++ I      F                Y    +     L D 
Sbjct: 434 WDRAEAGLAAALVH-NGLEYEIQEGEGAF----------------YGPKIEF---ALRDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
           L        R  + G +      ++LP  + AT+   D  +   V +    +G++     
Sbjct: 474 L-------GREWQCGTV---QLDFALPGRLDATYVAEDNSRKTPVMIHRAILGSIERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +I   + G    +P  +AP +  ++NI        D  +K+  +LS VG  V  D   E+
Sbjct: 524 IITEEYAG---FFPAWLAPTQAVVMNITDSQA---DYVQKVAKQLSDVGLRVKTDLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +G +     L   P  ++ G K +++ KV ++ R
Sbjct: 578 VGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRTR 611


>gi|126179985|ref|YP_001047950.1| prolyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|152112929|sp|A3CX68|SYP_METMJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125862779|gb|ABN57968.1| prolyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 477

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G +   G  +S   + T++ A+G+  Y     YGI + R +AAV+    D KG+
Sbjct: 222 GKTLQIGTVHMLGDHFSRTYAITYEDANGEQQYAYQTCYGI-SERSIAAVVSVHGDDKGL 280

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           + P  VAP ++ ++ I   K  D+V   +   + A L   G  V  D    + G+++   
Sbjct: 281 VLPPEVAPLEVVIVPIIVGKRRDEV-LASAAALEAELRGAGFAVKLDARDMRPGAKYYHW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKV 416
           ++ G PL+V VG + +  + V
Sbjct: 340 EMRGVPLRVEVGPRDIDANTV 360



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 5/165 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+Y W P G         ++R+  +R  A  M    +   +   E+     +  E+  +
Sbjct: 35  KGLYVWYPHGFGIRKRAYGVLRDLMDRDHAETMFPLLIPKTEFMKEAEHIKGFEDEVYWV 94

Query: 97  --ADRN--DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               RN  D  +   PT E  +  ++   I+S+ +LP   YQ+   FR E +    ++R 
Sbjct: 95  THGGRNELDVPLALRPTSETAIYPMYALWIRSHTDLPLRLYQVVNTFRYETKHTRPLIRL 154

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           RE    K+A++   T E +          Y   +  L +  I  R
Sbjct: 155 REITSFKEAHTVHATREEAAAQVETAIALYREFYDTLRVPVILSR 199


>gi|50419495|ref|XP_458274.1| DEHA2C13706p [Debaryomyces hansenii CBS767]
 gi|49653940|emb|CAG86351.1| DEHA2C13706p [Debaryomyces hansenii]
          Length = 682

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 129/342 (37%), Gaps = 78/342 (22%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 278 DEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 337

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT E +     ++   Y  I+    L ++P                +V     E +
Sbjct: 338 HTAHLTKESAAEEVEQILDLYAGIYEE--LLAVP----------------VVKGKKTENE 379

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   D+         T  +  I+                                 + R
Sbjct: 380 KFAGGDY--------TTTCEGFIA--------------------------------ETGR 399

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKD----HYVQMGSYGIGAMRVVAAVIESSHDGK 336
           GI+     + GT +S   + + +  +G D    H  Q  S+G+ + RV+  ++ +  D K
Sbjct: 400 GIQGATSHHLGTNFSKMFNISVENPEGADKPRVHAFQ-NSWGL-STRVIGVMVMTHSDNK 457

Query: 337 GIIWPDSVAPFKISLINI----KAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           G++ P  VA  ++ +I +    K  D+      D    I   L +    V  D       
Sbjct: 458 GLVLPPRVAQTQVVVIPVGLTAKTPDEQRKAINDGAANIEHILKQTDVRVTGDYRDNYSP 517

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G +F+  +L G PL++  G K ++  +V      T +R D S
Sbjct: 518 GWKFSNWELKGTPLRLEFGPKDLASEQV------TAVRRDNS 553


>gi|260437371|ref|ZP_05791187.1| threonine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292810283|gb|EFF69488.1| threonine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 651

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G++ +  +   I +E++  G +    P +  +DL+  SG +D Y   M  L
Sbjct: 259 QGLPLIMPKGERIIRTLQRWIEDEEDSRGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D      ++   P        ++++  KSYR+LP  + +    FR+E      G+ R R
Sbjct: 319 GDEEKDKEVFALRPMTCPFQYYVYKASQKSYRDLPLRYGETSTLFRNEDSGEMHGLTRVR 378

Query: 154 EFLMKDAY 161
           +F + + +
Sbjct: 379 QFTISEGH 386


>gi|254556435|ref|YP_003062852.1| threonine-tRNA ligase 1 [Lactobacillus plantarum JDM1]
 gi|308180379|ref|YP_003924507.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254045362|gb|ACT62155.1| threonine-tRNA ligase 1 [Lactobacillus plantarum JDM1]
 gi|308045870|gb|ADN98413.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 654

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D++ +SG +D Y ++M    
Sbjct: 268 GLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPM 327

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D   +   P +      I+  HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 328 DMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREM 387

Query: 156 LMKDAYSF 163
            + D ++F
Sbjct: 388 TLNDGHTF 395



 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 302 FKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHD 358
           + GADG++H   M   G +  M    A +   + G    W   +AP ++++I  N  AH 
Sbjct: 509 YVGADGEEHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPKQVTIIPVNNGAHG 565

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  E +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V +
Sbjct: 566 AYA----ETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSV 621

Query: 419 K 419
           +
Sbjct: 622 R 622


>gi|261368006|ref|ZP_05980889.1| threonine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282569994|gb|EFB75529.1| threonine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 596

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I++++   G + +  P + + +L+  SG +D Y + M   
Sbjct: 213 RGLPMFLPNGYIVWQQLEDYIKQKERERGYLHVMTPCIGTVNLYRTSGHWDHYRENMFPA 272

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ +   SYR LP    +I   FR E      G+ R R F
Sbjct: 273 MEMEGESYVLRPMNCPHHMMIYANQPHSYRQLPIRIGEIAHDFRYESSGTLKGIERGRHF 332

Query: 156 LMKDAYSFDLTPEGSK 171
              DA+ F +TPE  K
Sbjct: 333 CQNDAHLF-VTPEQIK 347


>gi|51102318|gb|AAT95872.1| prolyl-tRNA synthetase [Entamoeba moshkovskii]
          Length = 410

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/425 (20%), Positives = 160/425 (37%), Gaps = 75/425 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           ++++++G+I  +   G Y   P      +N+   I     R G      P   S A L  
Sbjct: 2   QIVVQSGLIEYYDISGCYILRPPAYGIWENIQQFIDARIKRMGVENAYFPCFVSQATLKK 61

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E ++   F++ I  +R+LP    Q   
Sbjct: 62  EEDELNGFTPEVAWVTKSGQTDLQEPIALRPTSETIIYPAFKNWISGHRDLPMKVNQWCN 121

Query: 138 KFRDELRPRFGVMRSREFLMKDAYS-FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R E    +  +R+REFL ++ ++ F   PE  K  +  M + Y  ++    L ++P+ 
Sbjct: 122 VVRWEFSHPYPFIRTREFLWQEGHTAFSNQPEAEKECHEIMEL-YASVYE--DLLAVPV- 177

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                I G  S         GET          FP                      A Y
Sbjct: 178 -----IRGKKS--------KGET----------FP---------------------GAYY 193

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           + T +         +P N     R I+     + G  +S      F+    K       S
Sbjct: 194 SLTVEC-------IVPTN----GRSIQAATSHHLGQTFSKLFDIEFEDESNKKQLAWQNS 242

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
           +G+ + R +   + +  D KG++ P   A  ++ +I +  H     D  +     LS++ 
Sbjct: 243 WGL-STRSIGVTVMTHGDNKGVVIPPRAAQKQVVIITLH-HKGSPNDEMDTKAVELSQLL 300

Query: 376 ---GCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G   F D  DM  + G +F+  ++ G P+++ +G +     KV I  R  G + + S
Sbjct: 301 LDNGIRAFADTNDM-HKPGWKFSEYEMRGIPIRIELGPRDYDGKKVVIVRRDNGAKTESS 359

Query: 431 LEEVI 435
            + ++
Sbjct: 360 WDNLV 364


>gi|30248961|ref|NP_841031.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
 gi|73919810|sp|Q82VV1|SYT_NITEU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|30138578|emb|CAD84869.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 635

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 5/151 (3%)

Query: 17  DAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H KL  +  + H  + + G+  W P G      +   +R+     G +E+  P 
Sbjct: 237 EAEKRDHRKLGKQLDLFHTQEEAPGMVYWHPKGWVVWQQIEQYMRQTLAGNGYVEIRTPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW  SG ++++ + M  + +  ++     P +      +F   ++SYR+LP    
Sbjct: 297 VLDRSLWESSGHWENFRENMF-ITESENRHYAIKPMNCPGHVQVFNHGLRSYRDLPLRLA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +     R+E      G+MR R F   DA+ F
Sbjct: 356 EFGSCHRNEASGALHGLMRVRSFTQDDAHIF 386


>gi|301095894|ref|XP_002897046.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262108475|gb|EEY66527.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 725

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 173/441 (39%), Gaps = 71/441 (16%)

Query: 11  LQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           LQE   +A+   H+L+ R     M H  S G   +LP G +  + +   IR E  R G  
Sbjct: 301 LQE---EAKKRDHRLIGRAQQLFMFHPLSPGSSFFLPHGTRVFNTLADFIRREYRRRGYD 357

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTD-------- 116
           E+  P +   +LW  SG   +Y  +M  ++     +D    +G TH     +        
Sbjct: 358 EVITPLIFKKELWETSGHLQNYHDDMFMVSQGIATDDACEEHGHTHSHGEEEYDQFGLKP 417

Query: 117 --------IFRSHIK-SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
                   +FR   K SYR LP          R+E      G+ R R F   DA+ F   
Sbjct: 418 MNCPGHCLLFREAKKYSYRELPVRLADFSALHRNEASGALTGLTRVRRFHQDDAHIF--C 475

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCS 224
                 S   + + +++  + +      +R  + P    GDL      L D  E Q+  +
Sbjct: 476 TAAQVQSEMSLALDFIKHVYGIFDFKFNLRLSTRPEKYMGDLE-----LWDDAEDQLRLA 530

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            D  DF  P             ++ E   A Y    D+    + D+L    +     ++ 
Sbjct: 531 LD--DFGQPW------------TVNEGDGAFYGPKIDI---VVTDALQRQHQCGTIQLD- 572

Query: 285 GHIFYFGTKYSLPMS--ATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                    + LP++    + GADG+ H  + +    +G++  + A++     GK   WP
Sbjct: 573 ---------FQLPINFELEYDGADGEAHTPIIIHRAVLGSIERMMAILIEHTGGK---WP 620

Query: 342 DSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             ++P +++++ I +AH +   +    +    ++ G  V   D  + +  +   A + G+
Sbjct: 621 LWLSPRQVAVLPIAEAHREYAYEVASTLQNATAR-GLYVDVQDGSKTLNKRIREAQVAGY 679

Query: 401 PLQVIVGSKFVSDSKVEIKHR 421
              ++VG K  +  +V I+ R
Sbjct: 680 NYILVVGDKEQASGEVNIRTR 700


>gi|291395207|ref|XP_002714160.1| PREDICTED: threonyl-tRNA synthetase-like [Oryctolagus cuniculus]
          Length = 723

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 164/417 (39%), Gaps = 59/417 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 335 FHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIYNSRLWMTSGHWQHYSE 394

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 395 NMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRVADFGVLHRNELSGALTGLT 453

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD   
Sbjct: 454 RVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYNVFGFSFKLNLSTRPEKFLGD--- 508

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 509 --IEVWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKIDI 546

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    TF   DG D    V +    +G
Sbjct: 547 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TFVSHDGDDKKRPVIIHRAILG 595

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCD 378
           ++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D
Sbjct: 596 SVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMAD 649

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   D G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++ E I
Sbjct: 650 IDL-DAGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRTRDNKVHGERTISETI 705


>gi|269216980|ref|ZP_06160834.1| threonine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129787|gb|EEZ60871.1| threonine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 587

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 5/165 (3%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           RSK  L   +    +AE   H+ + R     M+     G   WLP G +  +++     +
Sbjct: 175 RSKEELAEHERMVAEAEKRDHRRIGREMELFMMADEGPGFPFWLPNGMRLKNSLMQYWMD 234

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            Q+  G  ++  P + +  LW  SG +D Y KE +   + + +     P +      I++
Sbjct: 235 MQDAYGYEQVDTPIILNKSLWETSGHWDHY-KENMYTTEIDGEEYAVKPMNCPGACLIYK 293

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           S  +SYR+LP    +     R EL+    G+ R R F   DA+ F
Sbjct: 294 SKPRSYRDLPLKLAEAGKDHRHELKGALHGLFRVRAFTQDDAHLF 338


>gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166223349|sp|A6SY30|SYT_JANMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151280543|gb|ABR88953.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 635

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 3/165 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      V   +R+        E+  P +    LW ++G +D+Y + 
Sbjct: 256 QEEAPGLIFWHPKGWSIWQQVEQYMRKVYQDNDYQEVKAPQILDRGLWEKTGHWDNYREN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  + +  +++    P +      I+ S ++SYR+LP  + +     R+E      G+MR
Sbjct: 316 MF-VTESENRSYALKPMNCPGHVQIYNSDMRSYRDLPLRYGEFGQCHRNEPSGALHGMMR 374

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            R F   D + F  T E             + ++   G ++I ++
Sbjct: 375 VRGFTQDDGHIF-CTEEQIAEEVTAFHAQAMAVYAAFGFENIDVK 418


>gi|310796349|gb|EFQ31810.1| threonyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 791

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 17/165 (10%)

Query: 15  PRDAEIASHKLMLRTG---------------MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           P   E+A+HK  L                    H+ S G   WLP G +  + + A I+E
Sbjct: 306 PSKKELAAHKKWLEEAAARDHRKLGQDQQLFFFHELSPGSAMWLPHGARIYNTLLAYIKE 365

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +  +    E+  P + +A+LW  SG +D Y  +M  + D + +     P +      +F 
Sbjct: 366 QYFKRDYHEVISPNMYNAELWKISGHWDHYKDDMF-VIDVDKEKFGLKPMNCPGHCLMFA 424

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              K+Y  LP+      +  R+E      G+ R R F   DA+ F
Sbjct: 425 HTPKAYHQLPWRVADFGVLHRNEASGALSGLTRVRRFQQDDAHIF 469


>gi|219684484|ref|ZP_03539428.1| threonyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219672473|gb|EED29526.1| threonyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 593

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/409 (18%), Positives = 156/409 (38%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  D Y   M    
Sbjct: 217 GLIFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKI 276

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 277 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 336

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T         ++    + ++ + G  S+     + P   +G D   E    
Sbjct: 337 QDDAHII-CTHSQVVDEIKEVLRFAIYMWSKFGFSSLKAYLSTKPDKSVGNDYDWEM--- 392

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +   +F +P E            I +   A Y    D+   K+ DSL  
Sbjct: 393 -----SLKVLEEALSNFEVPYE------------IDKGGGAFYGPKIDL---KIVDSLER 432

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
             ++S    +          ++LP   + T+   DGK+    M     +G++     ++ 
Sbjct: 433 EWQMSTIQFD----------FNLPERFNMTYTAEDGKEKRPFMIHRALLGSIERFFGILV 482

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   +W   ++P +  +I +   +    D   K+  +    G  +  D+   ++ +
Sbjct: 483 EHYGGAFPLW---LSPVQAVIIPV---NNTVEDYTIKVLNKFKNAGIRIKLDNSSSRMNA 536

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVI 435
           +         P   I+G +   + K+ I+ R    + GI  D +L+ ++
Sbjct: 537 KIREYQAKKIPYMFIIGEREAIEEKISIRTRTNEQINGIELDEALKLIL 585


>gi|227908819|ref|NP_758514.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Mus musculus]
 gi|81896660|sp|Q8BLY2|SYTC2_MOUSE RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|26334063|dbj|BAC30749.1| unnamed protein product [Mus musculus]
          Length = 790

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 163/416 (39%), Gaps = 59/416 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y   
Sbjct: 403 HDLSPGSCFFLPRGAFIYNALMDFIREEYHKRNFTEVLSPNMYNSKLWETSGHWQHYSNN 462

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D         P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 463 MFTF-DVEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRFADFGVLHRNELSGTLSGLTR 521

Query: 152 SREFLMKDAYSFDLTPE------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R F   DA+ F +  +      G  H    ++ ++   F +L L + P         G+
Sbjct: 522 VRRFQQDDAHIFCMVEQIEEEIKGCLHFLQSVYSTFGFSF-QLNLSTRPEH-----FLGE 575

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                I + D  E Q+      ++F  P +    D             A Y    D+   
Sbjct: 576 -----IEIWDEAERQL--QNSLVEFGKPWKINPGDG------------AFYGPKIDI--- 613

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           K+ D++    + +   ++    F    +++L   +  K  D K+  V +    +G++  +
Sbjct: 614 KIKDAIGRYHQCATIQLD----FQLPIRFNLTYVS--KDGDDKNRPVIIHRAILGSVERM 667

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG------CDV 379
            A++  ++ GK   WP  ++P ++ +I +         ACE    ++SK         DV
Sbjct: 668 IAILSENYGGK---WPLWLSPRQVMVIPVGP-------ACENYALQVSKECFEEGFMADV 717

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DD    +  +   A L  +   ++VG K   ++ V ++ R   I  ++S+  VI
Sbjct: 718 DLDDSC-TLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDNKIHGEISIASVI 772


>gi|24657723|gb|AAH39225.1| Threonyl-tRNA synthetase-like 2 [Mus musculus]
          Length = 790

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 163/416 (39%), Gaps = 59/416 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y   
Sbjct: 403 HDLSPGSCFFLPRGAFIYNALMDFIREEYHKRNFTEVLSPNMYNSKLWETSGHWQHYSNN 462

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D         P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 463 MFTF-DVEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRFADFGVLHRNELSGTLSGLTR 521

Query: 152 SREFLMKDAYSFDLTPE------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R F   DA+ F +  +      G  H    ++ ++   F +L L + P         G+
Sbjct: 522 VRRFQQDDAHIFCMVEQIEEEIKGCLHFLQSVYSTFGFSF-QLNLSTRPEH-----FLGE 575

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                I + D  E Q+      ++F  P +    D             A Y    D+   
Sbjct: 576 -----IEIWDEAERQL--QNSLVEFGKPWKINPGDG------------AFYGPKIDI--- 613

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           K+ D++    + +   ++    F    +++L  +   K  D K+  V +    +G++  +
Sbjct: 614 KIKDAIGRYHQCATIQLD----FQLPIRFNL--TYVSKDGDDKNRPVIIHRAILGSVERM 667

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG------CDV 379
            A++  ++ GK   WP  ++P ++ +I +         ACE    ++SK         DV
Sbjct: 668 IAILSENYGGK---WPLWLSPRQVMVIPVGP-------ACENYALQVSKECFEEGFMADV 717

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DD    +  +   A L  +   ++VG K   ++ V ++ R   I  ++S+  VI
Sbjct: 718 DLDDSC-TLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDNKIHGEISIASVI 772


>gi|256113621|ref|ZP_05454441.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|265994988|ref|ZP_06107545.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|262766101|gb|EEZ11890.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
          Length = 658

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++    D  D   ++   P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDHVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLQI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|169828188|ref|YP_001698346.1| threonyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168992676|gb|ACA40216.1| Threonyl-tRNA synthetase 2 [Lysinibacillus sphaericus C3-41]
          Length = 637

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 5/166 (3%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            KYF+ + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q +
Sbjct: 231 QKYFVFLEEAEKRNHRKLGKELSL--FMFSEEAPGMPFYLANGQILRNELESYLRNLQAK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + +  LW +SG +D Y K+ +     ++++    P +      IF++++ 
Sbjct: 289 YDYQEVRTPLMMNQRLWEQSGHWDHY-KDNMYFTQVDNQSFALKPMNCPGHMLIFKNNLH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           SYR+LP    +     R E      G++R R F   DA+ F  TP+
Sbjct: 348 SYRDLPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-ATPQ 392


>gi|134100182|ref|YP_001105843.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006599|ref|ZP_06564572.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912805|emb|CAM02918.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 405

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   IR+ + R G   +  P L   +L+  SG +D Y  +M    
Sbjct: 23  GLPYWLPDGALVRHTLEEYIRDAERRAGYQHVYSPVLGKRELYEISGHWDHYRDDMFPPM 82

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
               + ++  P+       I+RS   SYR LP    ++   +R EL     G+ R R   
Sbjct: 83  RLGAEQVVLRPSLCPHHALIYRSRSHSYRELPLRMAELGGMYRSELSGVLGGLTRVRAIH 142

Query: 157 MKDAYSF 163
           + DA+ F
Sbjct: 143 LNDAHIF 149


>gi|148671336|gb|EDL03283.1| threonyl-tRNA synthetase, isoform CRA_a [Mus musculus]
          Length = 544

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/418 (20%), Positives = 165/418 (39%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 155 FFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 214

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       ++  +  P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 215 ENMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 274 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 329

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + +  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 330 ---IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKID 366

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 367 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 415

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 416 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 469

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D   D  G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++EE +
Sbjct: 470 DTDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVEETV 526


>gi|46202001|ref|ZP_00053978.2| COG0442: Prolyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 500

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 101/258 (39%), Gaps = 61/258 (23%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ D F   I+SYR+LP    Q     R E+RPR   +R+ EFL ++ 
Sbjct: 116 EEPLVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWEMRPRI-FLRTAEFLWQEG 174

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     +M   Y R+     L ++P+      +G   +HE           
Sbjct: 175 HTAHATAEEAMEETLRMLEVY-RVMSEEVL-AMPVI-----VGEKPAHE----------- 216

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                    FP        D   S+ ++++   A  A TS                    
Sbjct: 217 --------RFP------GADKTYSIEAMMQDGKALQAGTS-------------------- 242

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                   + G  +S   +  ++ A G + +    S+G+ + R++  VI S  D  G+  
Sbjct: 243 -------HFLGQHFSKAQNIRYQTAQGGEEFCFTTSWGV-STRLIGGVIMSHADDNGLRV 294

Query: 341 PDSVAPFKISLINIKAHD 358
           P  +AP +I  + I   D
Sbjct: 295 PPRIAPKQIVFVPITRAD 312


>gi|257064333|ref|YP_003144005.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791986|gb|ACV22656.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Slackia
           heliotrinireducens DSM 20476]
          Length = 586

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M      G   WLP G K  + +     +   +    E+  P + S  LW  SG +D Y 
Sbjct: 206 MFADEGPGFPFWLPNGTKLKNALIEYWHDMMAKYNYDEVETPQILSRKLWETSGHWDHYK 265

Query: 91  KEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   + D  D A+   P +      I++S  +SYR+LP    +  L  R EL+    G
Sbjct: 266 ENMYTTVIDEEDYAV--KPMNCPGACLIYKSRPRSYRDLPLKLAEAGLDHRHELKGALHG 323

Query: 149 VMRSREFLMKDAYSFDLTPE 168
           + R R F   D + + +TPE
Sbjct: 324 LFRVRAFTQDDGHIY-VTPE 342


>gi|28211584|ref|NP_782528.1| histidyl-tRNA synthetase [Clostridium tetani E88]
 gi|32130099|sp|Q892X7|SYH_CLOTE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|28204025|gb|AAO36465.1| histidyl-tRNA synthetase [Clostridium tetani E88]
          Length = 439

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 178/443 (40%), Gaps = 67/443 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G    LP  Q   + +   IR    + G I +  PT++ +++ +  G  ++  K++ R  
Sbjct: 13  GFMELLPADQIVFNKMKDTIRHNYEKFGFIPLDTPTIEKSEILLAKGGGET-EKQIYRFN 71

Query: 98  DRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             N D ++ +  T   V    + S   S  N PF  Y I   FR E R + G  R REF 
Sbjct: 72  KGNTDLSLRFDLT---VPLARYVSQHFSDLNFPFRRYHISKVFRGE-RNQKG--RFREFY 125

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYL--RIFHRLGLKSIPMRAESGPI------GGDLSH 208
             D    D+   GS    N   +  +  + F  LG +   +R  +  +      G D+  
Sbjct: 126 QCD---IDIIGNGSLSIINDAEIPSIIYQTFKELGFEDFTIRINNRKVLNGFFEGTDVED 182

Query: 209 EFIVL------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-------------- 248
              VL         GE  V   K+  +  +  E++  D II+  +I              
Sbjct: 183 RKGVLRAIDKIEKIGEDGV--RKELQELGL--EDSKIDKIINFINIKGTKSEVIKSLKEL 238

Query: 249 -VEQ---WTAPYAATSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMS-- 299
            +E        Y     VH  K F+   +N ++    ARG++    +Y GT Y   ++  
Sbjct: 239 DIENDVFKEGVYELEKVVHYIKSFNVPDKNYKIDLTIARGLD----YYTGTVYETVLNNY 294

Query: 300 ----ATFKGA---DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
               +   G    +  +HY      G+G    +  +     + K II  ++ +    +L+
Sbjct: 295 PQIGSVCSGGRYDNLAEHYTNQKLPGVGISIGLTRLFYQLREAK-IIGENASSTLSQALV 353

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I   D +          R +++  +++ +D   +IG +FA AD L  P  +++G   + 
Sbjct: 354 -IPVGDTMEYSIKVANKLRENEIISELYLEDA--KIGKKFAYADKLKIPYVILIGEDELK 410

Query: 413 DSKVEIKHRLTGIREDMSLEEVI 435
           + KV +K+  TG +E MSLEE I
Sbjct: 411 EEKVSVKNMETGNQESMSLEEAI 433


>gi|303248736|ref|ZP_07334989.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302489901|gb|EFL49829.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 647

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G+     +    R E  R G   +  P +   +LW  SG YD+Y +E +   
Sbjct: 262 GMPIWHPKGELIRTILEDFERREHLRRGYQLVRGPLILRRELWERSGHYDNY-RENMYFT 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + +A    P +      I++S ++SYR+LP  ++++ +  R E      G+MR R+F 
Sbjct: 321 EIDGQAYGIKPMNCLSHMLIYKSRVRSYRDLPQRYFELGVVHRHEKSGVLHGLMRVRQFT 380

Query: 157 MKDAY 161
             DA+
Sbjct: 381 QDDAH 385


>gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074079|gb|ADJ63478.1| threonyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 635

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H    + G+  W P G      V   +R     
Sbjct: 231 YLHMLEE----AEKRDHRKLGRALDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +++Y + M      N +A    P +      IF S + 
Sbjct: 287 NGYQEVKAPQILDRSLWEKTGHWENYRENMFTTESEN-RAYALKPMNCPGHIQIFNSGLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP  + +     R+E      G+MR R F   D + F
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPSGALHGMMRVRGFTQDDGHIF 386


>gi|189501728|ref|YP_001957445.1| prolyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|259511573|sp|B3ER64|SYP_AMOA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189497169|gb|ACE05716.1| hypothetical protein Aasi_0277 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 491

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 77/160 (48%), Gaps = 5/160 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G +++     TF    G+  YV   S+G+   R++ A++ +  D KG++
Sbjct: 234 KALQAGTSHFLGQRFAKAFEVTFTNQAGQLDYVWGTSWGL-TTRLIGALVMTHSDDKGLV 292

Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
            P  VAP +I +I I   +   +  +   + I  +L         D   E + G +FA  
Sbjct: 293 LPPRVAPIQIVIIPIYRTQEEKEAIQQQAQHIQQQLIAHNISAKLDGRDEHKPGWKFAEY 352

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +L G P+++ +G   ++++ VE+  R T  +  +  + +I
Sbjct: 353 ELKGVPIRMAIGPNDLANNTVELTRRDTSEKTTVPTDNII 392


>gi|51598972|ref|YP_073160.1| threonyl-tRNA synthetase [Borrelia garinii PBi]
 gi|73919774|sp|Q660F3|SYT_BORGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51573543|gb|AAU07568.1| threonyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 582

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/409 (18%), Positives = 155/409 (37%), Gaps = 51/409 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G K    +    REE ++ G   +  P +  + LW  SG  + Y   M    
Sbjct: 205 GLIFFHPNGAKIRALIEDFWREEHSKNGYDILFTPHVGKSWLWQTSGHLNFYKDSMFEKI 264

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+ +   SYR+LPF + ++   +R +++    G+MR+R F 
Sbjct: 265 EMDKSDYYLKPMNCPFHIAIYNTGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFT 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    T         ++    + ++ + G  S+     + P   +G +        
Sbjct: 325 QDDAHII-CTHSQVVDEIKEVLRFAIYMWSKFGFNSLKAYLSTKPDKSVGNN-------- 375

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           +D   +     +   DF +P E            I +   A Y    D+   K+ DSL  
Sbjct: 376 SDWEMSLKVLKEALSDFEVPYE------------IDKGGGAFYGPKIDL---KIVDSLER 420

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
             ++S    +          ++LP   + T+   DGK+    M     +G++     ++ 
Sbjct: 421 EWQMSTIQFD----------FNLPERFNMTYTSEDGKEKRPFMIHRALLGSIERFFGILV 470

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   +W   V    I + NI        D   K++ +    G  +  D+   ++ +
Sbjct: 471 EHYGGAFPLWLSHVQAVIIPVNNI------VEDYTIKVFNKFKNAGIRIKLDNSSSRMNA 524

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVI 435
           +         P   I+G +   + ++ I+ R    + GI  D +L+ ++
Sbjct: 525 KIREYQAKKIPYMFIIGEREAIEERISIRTRTNEQINGIELDEALKLIL 573


>gi|50555740|ref|XP_505278.1| YALI0F11231p [Yarrowia lipolytica]
 gi|49651148|emb|CAG78085.1| YALI0F11231p [Yarrowia lipolytica]
          Length = 755

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + +  S G   WLP G +    +  ++R+E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 353 LFNDMSPGSCFWLPHGARIYSALTDLLRKEYRKRGYEEVITPNMYNSKLWETSGHWQNYK 412

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            +M       +K  +  P +      +F++  +SY+ LP+      +  R+E      G+
Sbjct: 413 DDMFTFEIEKEKFGL-KPMNCPGHCLMFKARDRSYKELPWRVADFGVIHRNEASGALTGL 471

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 472 TRVRRFQQDDAHIF 485


>gi|50294994|ref|XP_449908.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49529222|emb|CAG62888.1| unnamed protein product [Candida glabrata]
          Length = 726

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 332 LFNEMSPGSCFWLPHGTRIYNTLVDLLRSEYRKRGYEEVITPNMYNSKLWETSGHWANYK 391

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F++  +SYR LP+      +  R+E      G+
Sbjct: 392 ENMFTF-EVEKETFGLKPMNCPGHCLMFKARERSYRELPWRVADFGVIHRNEFSGALSGL 450

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 451 TRVRRFQQDDAHIF 464


>gi|317047868|ref|YP_004115516.1| threonyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316949485|gb|ADU68960.1| threonyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 642

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 144/398 (36%), Gaps = 50/398 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +   N        ++   G + I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQVRDEVNSCIRMVYDMYSTFGFEKIVVKLSTRPEKRIGTD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-K 266
                + D  E                   D  + +  N I  ++     A      E  
Sbjct: 432 ----EMWDRAE------------------VDLAEALKENQIPFEYQPGEGAFYGPKIEFT 469

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMR 323
           L D L        R  + G +      +SLP  + AT+ G +       M    I G+M 
Sbjct: 470 LHDCLD-------RAWQCGTV---QLDFSLPKRLDATYVGENNDRQTPVMIHRAILGSME 519

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     G    +P  +AP +  ++NI        +   ++  +L   G  V  D 
Sbjct: 520 RFIGILTEEFAG---FFPSWLAPVQAVVMNITDSQA---EYVSELTKKLQNAGIRVKADL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 574 RNEKIGFKIREHTLRRVPYMLVCGEKEVEAGKVAVRTR 611


>gi|315122407|ref|YP_004062896.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495809|gb|ADR52408.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 653

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 15/212 (7%)

Query: 4   SKYFLPILQENPRD-AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           ++Y   I++   RD  +IA    +  T    +   G+  W   G K    + + +R  + 
Sbjct: 232 TQYLDFIVESEKRDHRKIAREMDLFHTA---EDGSGVIFWHQKGWKTFQTLISYMRR-KI 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEM--LRLAD---RNDKAMIYGPTHEEVMTDI 117
           +    E++ P +   +LW +SG +D Y   M  ++ AD   ++ ++    P +     +I
Sbjct: 288 KDDYEEINTPQVLDQNLWKQSGHWDWYRANMFAVQCADETIKDLRSFALKPMNCPGHVEI 347

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+  +KSYR LP    +    +R+E      G+MR R F   DA+ F  T E       K
Sbjct: 348 FKHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF-CTKEQMFEECLK 406

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +    + I+   G ++I ++  + P   +G D
Sbjct: 407 IHNLIVSIYKDFGFENITVKLSTRPEKRVGSD 438


>gi|322391061|ref|ZP_08064565.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321142291|gb|EFX37765.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 446

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++               EE  + G  E+  P + 
Sbjct: 175 RGAKVTGARFLFYKGLGARLERAIYNFM--------------LEEHGKEGYTEVIPPYMV 220

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 221 NHDSMFGTGQYPKFKEDTFELSDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 277

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 278 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYDELEKMVVNAENILQKLNL- 335

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 336 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 366


>gi|261407942|ref|YP_003244183.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261284405|gb|ACX66376.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 485

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT +S      +   +    Y    S+G+ + R++ ++I    D +G+
Sbjct: 228 GRAVQAGTSHYMGTNFSQAFDIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVHGDDRGL 286

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           + P  VAP ++ +I I   K  D V     ++++  L   G  V  DD  + + G +F  
Sbjct: 287 VLPPKVAPTQVIMIPIGPPKTRDAVV-GRTDELFRELKSAGIRVRVDDNPDVRPGWKFNE 345

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ G P+++ +G + + +    +  R+TG
Sbjct: 346 YEMRGVPVRLEIGPRDMENGVCVLVSRITG 375


>gi|77164649|ref|YP_343174.1| threonyl-tRNA synthetase, class IIA [Nitrosococcus oceani ATCC
           19707]
 gi|123757888|sp|Q3JC02|SYT_NITOC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|76882963|gb|ABA57644.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Nitrosococcus
           oceani ATCC 19707]
          Length = 644

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P+G +    +    +E     G   +  P +   +LW  SG  D Y + M +  
Sbjct: 262 GLVFWHPMGARIRRVIEDFWQERHTAAGYEMLYTPHIAHEELWQTSGHTDFYRESMYQPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + +     P +      I++  ++SYR LP  + ++   +R E+     G+MR R F 
Sbjct: 322 EDDHQLYQLKPMNCPFHVLIYQGRLRSYRELPIRWAELGTVYRHEMSGALHGLMRVRGFT 381

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 382 QDDAHIF 388


>gi|160946146|ref|ZP_02093357.1| hypothetical protein PEPMIC_00108 [Parvimonas micra ATCC 33270]
 gi|158447669|gb|EDP24664.1| hypothetical protein PEPMIC_00108 [Parvimonas micra ATCC 33270]
          Length = 648

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 4/169 (2%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q+   G+  WLP G      V   I +++   G   +  P L + DL+  SG +D Y
Sbjct: 257 MISQNVGAGLPFWLPKGATIRRVVERYIVDKEIECGYEHVYTPILANVDLYKTSGHWDHY 316

Query: 90  GKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
              M    D  N + ++  P +     +I+ + + SY+  P    ++ +  R E+     
Sbjct: 317 QDSMFPPMDLGNGELLVLRPMNCPHHMEIYNNDVHSYKEFPIRIAELGMMHRYEMSGTLS 376

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           G+ R RE  + DA+ F + P+  K  + ++      ++    +K+   R
Sbjct: 377 GLQRVREMTLNDAHIF-VRPDQIKEEFTRVVNLMKSVYEDFDIKNFRFR 424



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 301 TFKGADGKD-HYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           T+ G DGK+ H   +   GI +   R VA +IE     KG  +P  +AP ++ ++ I   
Sbjct: 505 TYVGEDGKNTHRPVVIHRGIVSTMERFVAYLIEEY---KGA-FPTWLAPEQVKILPISDK 560

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++    +K    V  DD  E+IG +   A L   P  +IVG   V++  V 
Sbjct: 561 ---FNDYAYELQKEFAKKDIRVAVDDRTEKIGLKIREAQLAKIPYSLIVGENEVNERTVS 617

Query: 418 IKHRLTGIREDMSLEEVIN 436
           ++ R  G +  M  E  ++
Sbjct: 618 VRKRGEGDKGSMKFEAFLD 636


>gi|86742942|ref|YP_483342.1| prolyl-tRNA synthetase [Frankia sp. CcI3]
 gi|114152196|sp|Q2J529|SYP_FRASC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86569804|gb|ABD13613.1| prolyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 468

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++      F GADG  H     S+G  + R+V  +I +  D  G+  P  +AP ++
Sbjct: 230 LGQNFARAFDIDFLGADGARHLAWTTSWGC-STRMVGGLIMAHGDDNGLRVPPRLAPTQV 288

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGS 408
            ++ ++  + V   A  +I A L+  G  V  D   G   G +   A++ G P++V VG 
Sbjct: 289 VVLPVRDEETVVAKA-RQIAAALTDAGLRVQVDARPGLSFGRRVTDAEIKGIPVRVEVGP 347

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEV 434
           + ++   V +  R T  +  + L EV
Sbjct: 348 RDLAAGNVTLVRRDTSEKVPVPLAEV 373



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E V+ +      +SYR+LP    Q     R ELRPR   
Sbjct: 96  GKEL-------EEPVVVRPTSETVIGEYLAKWTQSYRDLPLLLNQWANVVRWELRPRL-F 147

Query: 150 MRSREFLMKDAYS 162
           +RS EFL ++ ++
Sbjct: 148 LRSSEFLWQEGHT 160


>gi|55379994|ref|YP_137844.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55232719|gb|AAV48138.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 672

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+K L+ ++  +       G  E+  P +   +LW +SG Y++Y  +M  L 
Sbjct: 292 GLPLYEPNGKKILNELSDYVAGLNRDAGYDEVETPHVFRTELWKKSGHYENYVDDMF-LL 350

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF  +  SYR+LP  +++    +R E R    G+ R+  F 
Sbjct: 351 DVNDEEYGLKPMNCPGHATIFEQNSWSYRDLPVRYFEDGKVYRKEQRGELSGLSRTWAFT 410

Query: 157 MKDAYSF 163
           + D + F
Sbjct: 411 IDDGHLF 417


>gi|332970051|gb|EGK09049.1| proline--tRNA ligase [Desmospora sp. 8437]
          Length = 488

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F   D +  YV   S+G  + R++ ++I    D +G+
Sbjct: 225 GKAVQAGTSHYLGENFAKGFDIKFLDRDNQLKYVHTTSWGT-STRLIGSMIMVHGDDRGL 283

Query: 339 IWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             P  VAP ++ +I    +K  ++V  +  + ++  L   G  V  D   E  G +F   
Sbjct: 284 ALPPRVAPTQVVMIPVGPVKLREKVM-ERFDPLFDDLQAAGVRVRADLREETPGWKFNEW 342

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           ++ G PL++ +G + V   +V +  R TG +  +++++ +
Sbjct: 343 EMRGVPLRLEIGPRDVDKGEVVLARRDTGEKMAVAIDQAV 382


>gi|260888481|ref|ZP_05899744.1| threonine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|330838210|ref|YP_004412790.1| threonyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|260861678|gb|EEX76178.1| threonine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|329745974|gb|AEB99330.1| threonyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 593

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)

Query: 16  RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +DA+   HK +   L   M  + + G+  WLP G K  + +    R      G  E+S P
Sbjct: 177 KDAQERDHKKIGPQLDLFMFDETAPGMPYWLPRGWKLFNALLEFWRGIHEAHGYQEVSAP 236

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            + +  LWV SG +  Y + M  +  AD +   D      P +      I++   +SYR+
Sbjct: 237 VINNKRLWVTSGHWAHYKENMFLIPGADGDIEADDTFAIKPMNCPNAIKIYQRKTRSYRD 296

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           LP  +  + +  R E      G+ R + F   D ++F
Sbjct: 297 LPIRYNTVDVIHRKEKSGELNGLFRVQLFRQDDDHTF 333


>gi|296135845|ref|YP_003643087.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795967|gb|ADG30757.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 639

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      V   +R+    +G  E+  P +    LW  SG +D+Y + 
Sbjct: 256 QEEAPGLAFWHPKGWALWQAVEQYMRQVYRDSGYQEVKGPQILDVSLWKRSGHWDNYSEN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      IF S ++SYR+LP  + +     R+E      G++R
Sbjct: 316 MF-FTESEKRQFAVKPMNCPGHIQIFNSGLRSYRDLPIRYGEFGSCHRNEPSGALHGLLR 374

Query: 152 SREFLMKDAYSF 163
            R F   D + F
Sbjct: 375 VRGFTQDDGHIF 386


>gi|329929336|ref|ZP_08283089.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328936705|gb|EGG33148.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 485

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT +S      +   +    Y    S+G+ + R++ ++I    D +G+
Sbjct: 228 GRAVQAGTSHYMGTNFSQAFDIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVHGDDRGL 286

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           + P  VAP ++ +I I   K  D V     ++++  L   G  V  DD  + + G +F  
Sbjct: 287 VLPPKVAPTQVIMIPIGPPKTRDAVV-GRTDELFRELKSAGIRVRVDDNPDVRPGWKFNE 345

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ G P+++ +G + + +    +  R+TG
Sbjct: 346 YEMRGVPVRLEIGPRDMENGVCVLVSRITG 375


>gi|167855812|ref|ZP_02478565.1| leucyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853091|gb|EDS24352.1| leucyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 643

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 144/394 (36%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F + PE  +            I+   G ++I ++  + P     + E 
Sbjct: 375 RVRGFTQDDAHIFCM-PEQVESEVTSCIKMVYDIYSTFGFENIQVKLSTRPANSIGTDEM 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+  +     + + + F I      F                Y    +       D 
Sbjct: 434 WNKAE-ADLAAALTANGLAFEIQEGEGAF----------------YGPKIEFALRDCLD- 475

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
                    R  + G I      + LP  +SA++   D       M    I G++     
Sbjct: 476 ---------REWQCGTI---QLDFFLPERLSASYVAEDNNRKTPVMIHRAILGSIERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +I   + G    +P  +AP +  ++NI        +  +++  +LS  G  V  D   E+
Sbjct: 524 IITEEYAG---FFPAWLAPVQAVVMNITDSQA---EYVQQVVKQLSDAGLRVKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +G +     L   P  ++ G K +++ KV ++ R
Sbjct: 578 VGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTR 611


>gi|73919796|sp|Q5UX65|SYT_HALMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+K L+ ++  +       G  E+  P +   +LW +SG Y++Y  +M  L 
Sbjct: 262 GLPLYEPNGKKILNELSDYVAGLNRDAGYDEVETPHVFRTELWKKSGHYENYVDDMF-LL 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF  +  SYR+LP  +++    +R E R    G+ R+  F 
Sbjct: 321 DVNDEEYGLKPMNCPGHATIFEQNSWSYRDLPVRYFEDGKVYRKEQRGELSGLSRTWAFT 380

Query: 157 MKDAYSF 163
           + D + F
Sbjct: 381 IDDGHLF 387


>gi|317403269|gb|EFV83787.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 650

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 10/176 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      V   +R      G  E+  P +    LW ++G +D+Y + M  
Sbjct: 264 APGLIFWHPKGWALWQQVEQYMRSVYRDNGYQEVKAPQILDISLWKKTGHWDNYRENMFT 323

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               N    +YG  P +      IF + + SYR LP  + +     R+E      G+MR 
Sbjct: 324 TESEN---RVYGLKPMNCPGHVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRV 380

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R F   D + F  T E  +           +++   G   +  +  + P   IG D
Sbjct: 381 RGFTQDDGHIF-CTEEQLQDECADFTALLQKVYRDFGFTEVLYKVATRPEKRIGSD 435


>gi|229494206|ref|ZP_04387969.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229318568|gb|EEN84426.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 406

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G    + +     E+  R+G   +  P +   +L+  SG +  +  +M    
Sbjct: 24  GLPLWLPDGAVIRNELEKFAAEQAARSGCRGVYTPVMAKKELYERSGHWSKFSDDMFPEM 83

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
               ++ +  P +      +F +  +SYR LPF   ++   FR EL     G+ R R+  
Sbjct: 84  KIGGESFLLRPANCPHHAQVFAARGRSYRELPFRVRELGSMFRSELSGVLSGLSRVRQIN 143

Query: 157 MKDAYSF 163
           + DA+ F
Sbjct: 144 LDDAHVF 150


>gi|254517592|ref|ZP_05129648.1| threonyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226911341|gb|EEH96542.1| threonyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 645

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K +  +   + +E+ + G +    P++   DL+  SG +D Y   M  L
Sbjct: 261 QGLPLIMPKGAKIVQLLQRWVEDEEEKRGYVFTKTPSMSKNDLFKVSGHWDHYKDGMFVL 320

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
              D++ + M   P        I+ +   SYR LP  + +    +R+E      G++R R
Sbjct: 321 GDEDKDPEVMALRPMTCPFQYTIYNAEQHSYRELPIRYAETSTLYRNEASGEMHGLIRVR 380

Query: 154 EFLMKDAY 161
           +F + D +
Sbjct: 381 QFTLSDGH 388


>gi|307106736|gb|EFN54981.1| hypothetical protein CHLNCDRAFT_24199 [Chlorella variabilis]
          Length = 572

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 122/325 (37%), Gaps = 50/325 (15%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   ++SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 176 EEPLVVRPTSETIVNHMFAQWVQSYRDLPLLINQWANVHRWEMRTR-PFVRTLEFLWQEG 234

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T + ++    +M    LR++    +    M               +V       +
Sbjct: 235 HTAHATAQEAEEETIRM----LRVYEDFAVNVAAMP--------------VVAGRKSRIE 276

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   +                      +E      A   D    +     P  ++  AR
Sbjct: 277 SFAGAN------------------CTYTIE------AMMGDRRALQARRRAPWGRQEGAR 312

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                H    G  ++      +    G+  YV   S+G+ + R+V  +I +  D  G+  
Sbjct: 313 LAGTSH--NLGDNFARAFGTRYLDEGGQLQYVHQSSWGV-STRMVGGIIMTHGDDAGLRL 369

Query: 341 PDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           P  +AP ++ ++ I   D   +    A +++ A L   G  V  D   ++  G +F   +
Sbjct: 370 PPRLAPTQVVIVPILKKDVDGEAVMAAVQRLEAALRGAGVRVQVDASTDRTPGWKFNQYE 429

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           + G P++V VG + V         R
Sbjct: 430 MKGVPVRVEVGPRDVEQGTCVTARR 454


>gi|326503454|dbj|BAJ86233.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506156|dbj|BAJ91317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++     TF+   G+   V   S+     R +  ++ +  D KG
Sbjct: 253 TGRGIQGATSHCLGQNFAKMFDITFENEKGERSMVWQNSWAY-TTRSIGVMVMTHGDDKG 311

Query: 338 IIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
           ++ P  VAP ++ +I +   D      + ACE     L++ G     D       G +++
Sbjct: 312 LVLPPKVAPIQVIVIPVPFKDADTTAIKGACESAVYTLNQAGIRADLDARENYSPGWKYS 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             ++ G PL++ +G K +++ +V I  R  G + D+   +++
Sbjct: 372 QWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPSTDLV 413



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F   I+S+R+LP    Q     R E       +RSREFL ++ ++   T 
Sbjct: 141 PTSETVMYPYFSKWIRSHRDLPLKCNQWCNVVRWEFSNPTPFIRSREFLWQEGHTVFATK 200

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y RI+   
Sbjct: 201 EEADEEVLQILELYRRIYEEF 221


>gi|289524208|ref|ZP_06441062.1| proline--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502864|gb|EFD24028.1| proline--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 481

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++ G   + G  ++      F+  DG+  Y    S+G+ + R++ A+I +  D  G++
Sbjct: 222 RALQAGTSHFLGQNFAKAFDIRFQNKDGELEYAWTTSWGV-STRLIGAIIMTHADNDGLV 280

Query: 340 WPDSVAPFKISLINIKAHDQVCRDA----CEKIYARLSKV-GCDVFWDDMGEQI--GSQF 392
            P +VAP K  ++ I     + ++      +KI  RL K+ G +    D    +  G +F
Sbjct: 281 LPPNVAPVKTVILPITPDQNLLQEKILPEAQKILERLKKILGANRVILDTQFHMRPGDRF 340

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                 G PL++ +G   +  S +    R TG   ++S + +
Sbjct: 341 FYHLQKGVPLRLELGEAEMKSSHLRAVRRDTGEVVNISFDAI 382



 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRL----AD 98
           P G    +++ + + E    TG +    P L  S+ L  E+   + +  E   +     +
Sbjct: 41  PTGYAIWESIQSQLDERFKETGHVNAYFPLLIPSSFLEKEAKHVEGFSPECAVVTYAGGE 100

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E V+  ++   I+S+R+LP    Q     R E RPR   +R+ EFL +
Sbjct: 101 ELEEPLVIRPTSETVIGHMYSKWIQSWRDLPILINQWCNVLRWEKRPRL-FLRTSEFLWQ 159

Query: 159 DAYSFDLTPEGSKHSYNKMFVSY 181
           + ++   T E +     +M   Y
Sbjct: 160 EGHTAHATREEALEETLRMLEVY 182


>gi|254453851|ref|ZP_05067288.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198268257|gb|EDY92527.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 649

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 149/401 (37%), Gaps = 54/401 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G +E++ P +    LW +SG ++ Y +
Sbjct: 261 MQEEAPGQIFWHPNGWLIYTQLQDYMRRKQRAGGYVEVNTPQVVDRKLWEQSGHWEKYQE 320

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    D A         P +      I+   +KSYR+LP    +     R E    
Sbjct: 321 HMFVVEVDEDHAREKSVNALKPMNCPCHVLIYNQGLKSYRDLPMRMAEFGSCNRYEPSGA 380

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   DA+ F    E         ++ +L  ++  LG ++  ++    P   
Sbjct: 381 LHGIMRVRGFTQDDAHIF--CTEDQIEEETLTYIEFLTGVYKDLGFENFKVKFSDRPDTR 438

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S E   + D  ET +  +                   +  + +E    P       + 
Sbjct: 439 AGSDE---VWDKAETALLAA-------------------TRKAGIEPELNP--GEGAFYG 474

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYG 318
            KL   L +          +G  +  GT    + LP  + A + GADG+ H  V +    
Sbjct: 475 PKLEFVLTD---------AIGRDWQCGTHQVDFVLPDRLDANYIGADGEKHRPVMLHRAT 525

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G+      ++   H GK   W   +AP ++ + +I +      D   ++ A L   G  
Sbjct: 526 LGSFERFIGILIEEHAGKLPFW---LAPRQVVVASIISD---ADDYVREVVAALQAKGVR 579

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   E+I  +     L   P+ +  G++ V +  V ++
Sbjct: 580 AEADIRNEKINYKVREHSLGKVPVILACGAREVEERTVSVR 620


>gi|158319516|ref|YP_001512023.1| prolyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|166980096|sp|A8MLB3|SYP_ALKOO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158139715|gb|ABW18027.1| prolyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 480

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/346 (17%), Positives = 135/346 (39%), Gaps = 74/346 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           PT E ++ +++   + SYR+LPF + Q    +++    RP    +R+ EFL ++ ++   
Sbjct: 115 PTSETIICEMYSKWLTSYRDLPFLYNQWCSVVRWEKSTRP---FLRTSEFLWQEGHTLHE 171

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E ++    +M    L I+       + M               +V+    E + F   
Sbjct: 172 TYEEAQAETLQM----LNIYRETAENLLAMP--------------VVIGQKSEKEKFAGA 213

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                                       A Y   + +H+               + ++ G
Sbjct: 214 ---------------------------YATYTMEALMHD--------------GKALQAG 232

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                G  ++     T+   +G+  +    S+G+ + R++  +I    D +G++ P  +A
Sbjct: 233 TSHNLGQHFTTAFDITYSDRNGELKHPYHTSWGV-STRLIGGIIMVHGDNRGLVLPPGIA 291

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           P ++ ++ + +H +   D   ++  RL    +V  D   D      G +F   ++ G P+
Sbjct: 292 PTQVVIVPVASHKEGVLDKANELRDRLKDKFRVELD---DRDNYSPGWKFNEWEMKGVPI 348

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVINYASHRFSNN 445
           ++ +G + + +++  +  R    ++ +S   LEE +       +NN
Sbjct: 349 RIEIGPRDIENNQAMLFRRDELEKDAVSLDDLEEAVEKLLEDINNN 394


>gi|260754807|ref|ZP_05867155.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260758029|ref|ZP_05870377.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260761852|ref|ZP_05874195.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|297248387|ref|ZP_06932105.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|260668347|gb|EEX55287.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260672284|gb|EEX59105.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674915|gb|EEX61736.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|297175556|gb|EFH34903.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 660

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 237 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 293 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 352

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E        +
Sbjct: 353 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLHI 411

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 412 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 442


>gi|157736342|ref|YP_001489025.1| threonyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|157698196|gb|ABV66356.1| threonyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 602

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 169/405 (41%), Gaps = 47/405 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  A++W  SG Y +Y KE +   
Sbjct: 228 GLPMWLPKGARLRSKLEHLLYKAHRIRGYEPVRGPEILKAEMWKISGHYANY-KENMYFT 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +D+     P +      IF++++ SY+ LP   ++  +  R E+     G+ R REF 
Sbjct: 287 TIDDQEYGIKPMNCVGHIQIFKNNLVSYKELPKKLFEYGVVHRHEMSGAMHGLFRVREFT 346

Query: 157 MKDAYSFDLTPEGSKHSYNKM-FV-SYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFI 211
             D++ F    +  +  +  + FV + L++F   + + + + P +A    IG D+  E  
Sbjct: 347 QDDSHIFCTQDQIKQVIFEVLEFVDTLLKVFDFKYEIEVSTKPEKA----IGDDIFWE-- 400

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                       +K  MD  +   N  +        I E   A Y    D+   K+ D++
Sbjct: 401 ----------KTTKGIMD-ALDENNISY-------GIDEGGGAFYGPKIDI---KILDAI 439

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
               +     +++     F  +Y        KG   K+  V +    +G+      ++  
Sbjct: 440 GRKWQCGTVQVDMNLPSRFNVEY-----INEKGE--KEQPVMIHRAILGSFERFIGILTE 492

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              G+   +P  +AP ++ L+ I A   V  +  +++   L +   D    +M E +  +
Sbjct: 493 HCAGE---FPFIIAPTQVILVPI-ADSHV--EYAKELQKALLENDLDSEIYNMNESLNKR 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +A+    P+ V++G + V +  V +++R T  + +MS  E I+
Sbjct: 547 IRMAEKQRVPMIVVIGDEEVENKTVALRNRRTREQSNMSKNEFIS 591


>gi|154508918|ref|ZP_02044560.1| hypothetical protein ACTODO_01429 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798552|gb|EDN80972.1| hypothetical protein ACTODO_01429 [Actinomyces odontolyticus ATCC
           17982]
          Length = 677

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 130/345 (37%), Gaps = 63/345 (18%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  FY++   +R E      G+ R R F   D++++  TPE +     
Sbjct: 364 IFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQASEEIR 422

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                +L I    GLK   +   +    G    +FI                        
Sbjct: 423 TQIEFFLSILSAFGLKDFYLELSTRDEDGKKKDKFI------------------------ 458

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--------GHI 287
            +D           E W A   A  D       D +P+    +  G +V        G  
Sbjct: 459 GSD-----------EDWAAATKALEDACAATGLDLVPDPGGAAFYGPKVSVQVKDAIGRT 507

Query: 288 FYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +   T    ++ P      +  ADG +   V + S  +G++     V+   + G    W 
Sbjct: 508 WQMSTIQYDFNQPDRFDLEYTAADGSRQRPVMIHSAKLGSVERFIGVLTEHYAGAFPAW- 566

Query: 342 DSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             ++P ++ LI + +A D   +D   K+  R  +V  D+  D  G++I  + A  D +  
Sbjct: 567 --LSPVQVRLIPVAEAFDGYVKDVAAKLRERGVRVETDLSDDRFGKKI--RNASKDKI-- 620

Query: 401 PLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVINYASHR 441
           P  +I G + V    V  + R      G+  D ++E ++++   R
Sbjct: 621 PFTLIAGGEDVEAGAVSFRLRDGSQHNGVAVDRAVELIVSHIEQR 665


>gi|156838419|ref|XP_001642915.1| hypothetical protein Kpol_411p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113495|gb|EDO15057.1| hypothetical protein Kpol_411p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 729

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + ++ S G   WLP G +    +  ++R E  + G  E+  P + ++ LW  SG + +Y 
Sbjct: 335 LFNEMSPGSCFWLPHGTRIYSTLVDMMRTEYRKRGYEEVITPNMYNSKLWETSGHWANYK 394

Query: 91  KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           + M       +    YG  P +      +F+S  +SYR LP+      +  R+E      
Sbjct: 395 ENMFTFEVEKE---TYGLKPMNCPGHCLMFKSRERSYRELPWRVADFGVIHRNEYSGALS 451

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R R F   DA+ F
Sbjct: 452 GLTRVRRFQQDDAHIF 467


>gi|15602458|ref|NP_245530.1| threonyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431883|sp|P57857|SYT_PASMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12720863|gb|AAK02677.1| ThrS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 643

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 149/412 (36%), Gaps = 48/412 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G ++I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTACIKMVYDIYSTFGFENIQVKLSTRPEKRIGAD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+ G      S + +++ I      F                Y    +      
Sbjct: 432 -EMWDRAEAGLAAAL-SHNGLEYEIQEGEGAF----------------YGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D          R  + G I      ++LP  ++A++   D       M    I G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLNASYVAEDNDRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+   LS  G  V  D  
Sbjct: 521 FIGIITEEYAG---FFPAWLAPTQAIVMNITDSQS---DYVQKVVKTLSDAGLRVKSDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            E+IG +     L   P  ++ G K +   KV ++ R        ++EE ++
Sbjct: 575 NEKIGFKIREHTLRRVPYMLVCGDKEIEAGKVAVRTRKGADLGTFTIEEFLD 626


>gi|281357061|ref|ZP_06243551.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281316619|gb|EFB00643.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 591

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/403 (19%), Positives = 151/403 (37%), Gaps = 41/403 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G           +EE  + G   +  P +  + LW  SG    Y   M    
Sbjct: 215 GLVLWHPKGAFIRHTFETFWKEEHYKNGYELLYTPHIGQSVLWETSGHLSFYKDGMYSPM 274

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++K     P +     ++++S ++SYR LP  + ++   +R E      G++R R F 
Sbjct: 275 QIDEKDYYVKPMNCPFHIEVYQSRLRSYRELPLRWAELGTVYRYEKSGALHGLLRVRGFT 334

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D++    TPE  +    ++    L I+   G   I     + P               
Sbjct: 335 QDDSHII-CTPEQIEDEIAEVLRFSLYIWKSFGFTEIKPYLSTRPAKA-----------V 382

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           GE + +      +  + S     D +     + E   A Y    D+   K+ D++     
Sbjct: 383 GEPERW------EKALVSLRKAIDKLGLECEVDEGGGAFYGPKIDL---KVKDAI----- 428

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
              R  +   I +    ++LP     T+ G DGK H   M    + G++     ++   +
Sbjct: 429 --GREWQTATIQF---DFNLPERFDMTYIGEDGKKHRPYMVHRALMGSLERFFGILIEQY 483

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   +AP +  ++ +        DA   +   L   G  V  D     +G++  
Sbjct: 484 AGAFPLW---LAPEQARILPVSDRQH---DAAMALKKELRLKGFRVEVDVKAASLGAKIK 537

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            A     P  ++VG +  +D  + +++R  G    M+L++++ 
Sbjct: 538 DARKERIPYMLVVGEREAADGTMAVRNRREGELGTMTLDQLVE 580


>gi|226941673|ref|YP_002796747.1| threonyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|254783525|sp|C1DDA6|SYT_LARHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226716600|gb|ACO75738.1| Syt [Laribacter hongkongensis HLHK9]
          Length = 633

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 8/179 (4%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   + G+  W P G      V   +R         E+  P +    LW +SG +  Y +
Sbjct: 255 IQDEAPGMVFWHPKGWTLWQQVEQYMRRVLIANDYQEVRTPQIVDRSLWEKSGHWAMY-Q 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +++   +   +     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 314 DLMFTTESEKRDYAVKPMNCPCHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP---IGGD 205
           R R F+  DA+ F    E         F+  L+ ++   G  +I ++  + P   +G D
Sbjct: 374 RVRNFVQDDAHIF--CTEAQMQPETAAFIDLLQAVYQDFGFDNILIKLSTRPEKRVGAD 430


>gi|126313772|ref|XP_001370758.1| PREDICTED: similar to Threonyl-tRNA synthetase-like 1 [Monodelphis
           domestica]
          Length = 717

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 17/149 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G +  + +   IR+E  R G  E+  PTL S  LW +SG +  Y  
Sbjct: 313 FHELSPGSCFFLPRGTRVYNALMTFIRDEYARRGFSEVRTPTLFSTKLWEQSGHWKHYSG 372

Query: 92  EM--LRLADRNDKA--------------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +M  LR  D +  A              +   P +      IF    +S+R LP      
Sbjct: 373 DMFVLRPPDPDGPADCQNNCSTNHPQSMLALKPMNCPAHCLIFAHRPRSWRELPLRLADF 432

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSF 163
               R E      G+ R R F   DA+ F
Sbjct: 433 GALHRTEASGGLGGLTRLRRFQQDDAHIF 461


>gi|62289987|ref|YP_221780.1| threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699915|ref|YP_414489.1| threonyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024229|ref|YP_001934997.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|254689295|ref|ZP_05152549.1| threonyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254697431|ref|ZP_05159259.1| threonyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730329|ref|ZP_05188907.1| threonyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256257545|ref|ZP_05463081.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260545263|ref|ZP_05821004.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260883825|ref|ZP_05895439.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|73919775|sp|Q57D65|SYT_BRUAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123740930|sp|Q2YQ07|SYT_BRUA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689368|sp|B2S5S6|SYT_BRUA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62196119|gb|AAX74419.1| ThrS, threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616016|emb|CAJ11049.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase,
           class IIa:Threonyl-tRNA synthetase, class IIa:TGS
           domain:A [Brucella melitensis biovar Abortus 2308]
 gi|189019801|gb|ACD72523.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|260096670|gb|EEW80545.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260873353|gb|EEX80422.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
          Length = 658

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E        +
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLHI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|254693779|ref|ZP_05155607.1| threonyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|261214058|ref|ZP_05928339.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|260915665|gb|EEX82526.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
          Length = 658

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E        +
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLHI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|150021207|ref|YP_001306561.1| threonyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|149793728|gb|ABR31176.1| threonyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 636

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  +LP G   L+ + A  R      G  E+  P + +  LW +SG +D Y KE + 
Sbjct: 261 AAGMPIFLPKGTIILNELMAFSRSLHEEYGYTEVMTPLVMNVKLWYQSGHWDHY-KENMY 319

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             ++ +      P +      I+++++ SYR+LP   ++     R E      G++R R 
Sbjct: 320 FTEKEEVEYAIKPMNCPGHILIYKNNVVSYRDLPIRLFEFGKVHRYERSGVLHGLLRVRA 379

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 380 FTQDDAHIF 388



 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KIY+ L + G  V  DD  E +G +   A +   P  +IVG +     K+ I+ R    +
Sbjct: 557 KIYSILMENGVRVSVDDRNETLGYKIREAQINKIPYMIIVGEREEESGKISIRSRDGVEQ 616

Query: 427 EDMSLEEVINYASHRFSNNR 446
           +D+++EE ++  S      R
Sbjct: 617 KDIAVEEFLDLLSVSIKERR 636


>gi|294340009|emb|CAZ88373.1| threonine tRNA synthetase [Thiomonas sp. 3As]
          Length = 639

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      V   +R+    +G  E+  P +    LW  SG +D+Y + 
Sbjct: 256 QEEAPGLAFWHPKGWALWQAVEQYMRQVYRDSGYQEVKGPQILDVSLWKRSGHWDNYSEN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      IF S ++SYR+LP  + +     R+E      G++R
Sbjct: 316 MF-FTESEKRQFAVKPMNCPGHIQIFNSGLRSYRDLPIRYGEFGSCHRNEPSGALHGLLR 374

Query: 152 SREFLMKDAYSF 163
            R F   D + F
Sbjct: 375 VRGFTQDDGHIF 386


>gi|332141016|ref|YP_004426754.1| threonyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|238693239|sp|B4RSL8|SYT_ALTMD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|327551038|gb|AEA97756.1| threonyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 638

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 6/177 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      + + +R++    G  E+  P +    LW +SG +D Y + 
Sbjct: 257 QEEAPGMVFWHNDGWSIYTELESFVRKKLREYGYDEVKGPLMMDRSLWEKSGHWDKYAEN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MF-TTESEKREYAVKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
            R F   DA+ F  T E      +         +   G ++I ++  + P   +G D
Sbjct: 376 VRGFTQDDAHIF-CTEEQILEEVSGCIKMVYETYAAFGFENIKVKLSTRPEKRVGAD 431


>gi|311105446|ref|YP_003978299.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760135|gb|ADP15584.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 650

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 10/176 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      V   +R      G  E+  P +    LW ++G +D+Y + M  
Sbjct: 264 APGLIFWHPKGWALWQQVEQYMRSVYRDNGYQEVKAPQILDISLWKKTGHWDNYRENMFT 323

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               N    +YG  P +      IF + + SYR LP  + +     R+E      G+MR 
Sbjct: 324 TESEN---RVYGLKPMNCPGHVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRV 380

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R F   D + F  T E  +           +++   G   +  +  + P   IG D
Sbjct: 381 RGFTQDDGHIF-CTEEQLQDECADFTALLQKVYRDFGFTEVLYKVATRPEKRIGSD 435


>gi|296423870|ref|XP_002841475.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637715|emb|CAZ85666.1| unnamed protein product [Tuber melanosporum]
          Length = 658

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + +   +R+E  + G  E+  P + +A LW  SG + +Y 
Sbjct: 316 FFHELSPGSCFFLPHGTRIYNTLVGYLRQEYWKRGYEEVITPNMYNAKLWETSGHWQNYQ 375

Query: 91  KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           + M       DK   YG  P +      +F    +SYR LP+      +  R+E      
Sbjct: 376 ENMFTFEVEKDK---YGLKPMNCPGHCLLFGHRERSYRELPWRVADFGVIHRNEFSGALT 432

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R R F   D + F
Sbjct: 433 GLTRVRRFQQDDTHVF 448


>gi|255066457|ref|ZP_05318312.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049337|gb|EET44801.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 322

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 120/311 (38%), Gaps = 45/311 (14%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE--GSKHS 173
           IF + ++SYR+LP    +     R+E      G+MR R F+  DA+ F    +      +
Sbjct: 24  IFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARA 83

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           +N++ V   RI+ + G   + ++    P     S +    A+ G  +   +       +P
Sbjct: 84  FNELLV---RIYKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWDELP 140

Query: 234 SENTDFDDIISL---NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            E   +   I     +++   W         V  E+L           AR + +      
Sbjct: 141 GEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPERLDAEYVTENNDRARPVML------ 194

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                              H   +GS      R +  +IE+ H G   +W   +AP ++ 
Sbjct: 195 -------------------HRAILGSL----ERFIGILIEN-HAGSFPLW---LAPVQMV 227

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++NI  +     D C ++ A+L   G  V  D   E+IG +        FP Q++VG K 
Sbjct: 228 IMNITENQA---DYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKE 284

Query: 411 VSDSKVEIKHR 421
             ++KV ++ +
Sbjct: 285 KQENKVAVRRK 295


>gi|332701961|ref|ZP_08422049.1| threonyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552110|gb|EGJ49154.1| threonyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
          Length = 655

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  R G   +  P L   +LW  SG Y+ Y + M    
Sbjct: 261 GMVIWHPKGALIRTIIEDFERKEHLRRGYHIVQGPQLLKRELWERSGHYEHYRQNMY-FT 319

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +++A    P +      I++S ++SYR+LP   +++ +  R E      G++R R+F 
Sbjct: 320 EIDEQAYGVKPMNCLSHMLIYKSKVRSYRDLPLRLFELGVVHRHEKSGVLHGLLRVRQFT 379

Query: 157 MKDAY 161
             DA+
Sbjct: 380 QDDAH 384


>gi|218960761|ref|YP_001740536.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729418|emb|CAO80329.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 508

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 104/275 (37%), Gaps = 63/275 (22%)

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V   + ++ GK  L+LA    +  I  PT E ++   F   + SYR+LP    Q     R
Sbjct: 98  VTHSKLEADGKGGLQLAGELTEPYIVRPTSETIIGASFAKWVNSYRDLPLLINQWANIVR 157

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E+R R   +R+ EFL ++ ++   T + +K    KM   Y  IF R             
Sbjct: 158 WEMRTRL-FLRTTEFLWQEGHTVHETEKEAKEETLKMLNVYA-IFAR------------- 202

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                    D++  P I  E T+ +              P A T
Sbjct: 203 -------------------------DYLALPVIQGEKTESEKF------------PGAVT 225

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +      + D          + ++ G   + G  ++      F+   G+  Y    S+G+
Sbjct: 226 TYCIEAMMQDR---------KALQSGTSHFLGQNFAKASEIKFQNRKGEIEYAWTTSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            + R++ A+I +  D  G++ P  +AP  I++I I
Sbjct: 277 -STRLIGAIIMAHSDDNGLVLPPKIAPSHIAIIPI 310


>gi|268576408|ref|XP_002643184.1| C. briggsae CBR-PRS-1 protein [Caenorhabditis briggsae]
 gi|187040442|emb|CAP20827.1| CBR-PARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 579

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 129/332 (38%), Gaps = 67/332 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   ++  ++S+R+LP    Q     R E +     +R+REFL ++ ++    P
Sbjct: 193 PTSETVMYPSYKKWVQSHRDLPIKLNQWCNVVRWEFKHPTPFLRTREFLWQEGHTAFANP 252

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++    ++   Y  +++   L +IP                +V     E + F   DF
Sbjct: 253 SDAEKEVFQILDLYAGVYN--DLLAIP----------------VVKGRKSEKEKFAGGDF 294

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              + VE + A                       + RGI+    
Sbjct: 295 ------------------TTTVEAYVA----------------------CNGRGIQGATS 314

Query: 288 FYFGTKYSLPMSATFK--GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            + G  +S     +++    +G+  +    S+G+ + R + A++    D KG+I P  VA
Sbjct: 315 HHLGQNFSKMFDISYEDPAKEGERAFAWQNSWGL-STRTIGAMVMIHGDDKGLILPPRVA 373

Query: 346 PFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGF 400
             ++ ++ +     + +   DA +K+   L   G      D+ E    G +F   +L G 
Sbjct: 374 AVQVIVVPVGFKTENKEWLFDAVDKVTKDLVAGGIKAE-HDLRENYNAGWKFNHWELKGV 432

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           P++  VG   ++ ++V    R  G +  MSL+
Sbjct: 433 PIRFEVGPNDLAKNQVTAVIRHNGEKRQMSLD 464


>gi|239905697|ref|YP_002952436.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259516431|sp|C4XL11|SYT_DESMR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239795561|dbj|BAH74550.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 647

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 2/125 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G+     +    R E  R G   +  P +   +LW  SG YD+Y +E +   
Sbjct: 262 GMCIWHPKGELIRTIIEDFERREHLRRGYDLVRGPLILRRELWERSGHYDNY-RENMYFT 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++++    P +      I++S ++SYR+LP  ++++ +  R E      G++R R+F 
Sbjct: 321 EIDEQSYGIKPMNCLSHMLIYKSRVRSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQFT 380

Query: 157 MKDAY 161
             DA+
Sbjct: 381 QDDAH 385


>gi|299537247|ref|ZP_07050550.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727488|gb|EFI68060.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 638

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H+ +   L   M  + + G+  +L  GQ   + + + +R  Q +    E+  P 
Sbjct: 239 EAEKRNHRKLGKELSLFMFSEEAPGMPFYLANGQILRNELESYLRHLQAKYDYGEVRTPL 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG +D Y K+ +     +D++    P +      IF++ + SYR+LP    
Sbjct: 299 MMNQRLWEQSGHWDHY-KDNMYFTQVDDQSFALKPMNCPGHMLIFKNALHSYRDLPIRMA 357

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           +     R E      G++R R F   DA+ F  TP+
Sbjct: 358 EFGQVHRHEFSGALNGLLRVRTFCQDDAHIF-ATPQ 392


>gi|237815491|ref|ZP_04594489.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790328|gb|EEP64538.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 693

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 270 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 325

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 326 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 385

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E        +
Sbjct: 386 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLHI 444

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 445 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 475


>gi|227821825|ref|YP_002825795.1| threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|254783532|sp|C3MB49|SYT_RHISN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227340824|gb|ACP25042.1| ThrS; threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 661

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 166/447 (37%), Gaps = 60/447 (13%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L E    AE   H+ + R   + H  +   G+  W   G +   ++ A +R  +  
Sbjct: 234 YLHVLAE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRVFQSLVAYMRR-RLE 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++    D  D   ++   P +      IF
Sbjct: 289 VDYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPVRMAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
               L ++   G K I ++  + P   +G D       L D  E  +             
Sbjct: 408 NDLILSVYEDFGFKEIVVKLSTRPDKRVGSD------ALWDRAEAVM------------- 448

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK- 293
             TD  + I   S     T         +  K   +L +          +G  +  GT  
Sbjct: 449 --TDVLNTIEAQSEGRIKTGILPGEGAFYGPKFEYTLKDA---------IGREWQCGTTQ 497

Query: 294 --YSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +   D +     M    I G+M     ++  ++ G   +W   ++P +
Sbjct: 498 VDFNLPERFGAFYIDKDSEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW---ISPLQ 554

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +      D   ++ ARL + G  V  D   E+I  +     +   P+ V+ G 
Sbjct: 555 VVVATITSD---ADDYGREVAARLREAGLTVETDFRNEKINYKIREHSVTKVPVIVVCGK 611

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   +  V I+   +  +  MSLEE +
Sbjct: 612 REAEERSVNIRRLGSQAQTAMSLEEAV 638


>gi|189197599|ref|XP_001935137.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981085|gb|EDU47711.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 542

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 13/142 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G    LP G      + + +R +  + G  E+  P +    LW +SG +++Y ++M 
Sbjct: 88  YSPGSPLILPNGAYVFQKLQSFLRAQYPQFGFQEVITPIIYKKSLWEKSGHWENYAEDMF 147

Query: 95  RLADRNDKAMI----------YG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            +  R   A I          +G  P +      +FR  IKSYR+LP          R+E
Sbjct: 148 SVQGRGTTAQIPEAEGGEDGEFGLKPMNCPGHCLLFRDEIKSYRDLPVRLADFSALHRNE 207

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
           +     G+ R R F   DA+ F
Sbjct: 208 ISGALTGLTRVRRFHQDDAHIF 229


>gi|325685802|gb|EGD27875.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 643

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/408 (20%), Positives = 160/408 (39%), Gaps = 39/408 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +  M+   P +      I++ HI+SYR LP    ++ +  R E      G+ R RE 
Sbjct: 319 GMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 378

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + D ++F +  +  +  + +     + ++H   +     R         LS+      D
Sbjct: 379 TLNDGHTF-VALDQVQEEFARTLQIIMDVYHDFDINDYYFR---------LSYR-----D 423

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPEN 274
              T  + + D M     S      D + L+ +  E   A Y    D+  +    +L  +
Sbjct: 424 PKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGEAAFYGPKLDIQTKT---ALGND 480

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSH 333
           + +S   ++    F    ++ L    ++ GADG++H   M   GI G M    A +   +
Sbjct: 481 ETMSTIQLD----FMLPERFEL----SYIGADGEEHRPVMIHRGIVGTMERFIAYLTEIY 532

Query: 334 DGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            G    W   +AP +  +I  N+ AH     D  +K+   L   G     D   E++G +
Sbjct: 533 KGAFPTW---LAPVQAEIIPVNLDAH----SDYAKKVRDELVAKGFRAEIDFRNEKLGYK 585

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +     P  +++G   ++   V ++   T  +   SL E ++  S
Sbjct: 586 IRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLAEFMDKLS 633


>gi|312116222|ref|YP_004013818.1| prolyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221351|gb|ADP72719.1| prolyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 514

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 145/390 (37%), Gaps = 89/390 (22%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R + F    Q   RDA++A +  +    +I     GI+  +   QK LD   A I+E  +
Sbjct: 10  REQNFPEWYQAVVRDADLAENSPVRGCMIIKPWGYGIWERV---QKGLD---ARIKETGH 63

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEML-----RLADRNDK-----------AMIY 106
                 + +P    + L  E+   + + KEM      RL + + K            +I 
Sbjct: 64  ENCYFPIFIPM---SFLAKEAEHVEGFAKEMAVVTHHRLKNIDGKLVPDPEAELQEPLIV 120

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E ++ D F+  +KSYR+LP    Q     R E+R R   +R+ EFL ++ +    T
Sbjct: 121 RPTSETIIGDAFQRWVKSYRDLPILINQWANVVRWEMRTRM-FLRTTEFLWQEGH----T 175

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
               K       +  L ++       + M               +V  +  E + F    
Sbjct: 176 AHADKTDAMAETLRMLEVYRSFAEDVLAMP--------------VVAGEKPENERFPGA- 220

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                        D+  S+ ++++   A  A TS                          
Sbjct: 221 -------------DNTYSIEAMMQDGKALQAGTS-------------------------- 241

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             Y GT ++   +  F+   G+       S+G+ + R++  VI +  D  G+  P ++AP
Sbjct: 242 -HYLGTHFAEAQNIRFQNEAGELALCHTTSWGV-STRLIGGVIMTHGDDDGLRLPPAIAP 299

Query: 347 FKISLINI---KAHDQVCRDACEKIYARLS 373
            +I ++ +   K  D    + C  + A L+
Sbjct: 300 KQIVIVPMLRDKPEDAAVVEFCTSLAAELN 329


>gi|291519633|emb|CBK74854.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 588

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 152/419 (36%), Gaps = 60/419 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   IR ++ + G + +  P + +  L+  SG +D Y + M   
Sbjct: 203 RGLPMYLPNGYTIWTELENYIRNKERKLGYLHVMTPCVGTVQLYQTSGHWDHYKENMFPA 262

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      IF +   SY+ LP    +I   FR E      G+ R R F
Sbjct: 263 MEVEGESFVLRPMNCPHHMRIFANRPHSYKELPIRIAEIAHDFRFESSGTLKGIERGRHF 322

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              D++ F  T E  K                  +KS+           DL   F    D
Sbjct: 323 CQNDSHIF-CTQEQIKSE----------------VKSV----------CDLI--FSTYED 353

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G T   C     D P  ++    DD        E W     A  +   E   +   E  
Sbjct: 354 FGITDYRCVLSLRD-PADTKKYHQDD--------EMWNTAEQALRETLTEIGIEFTEEIG 404

Query: 276 RVSARGIE--------VGHIFYFGT---KYSLP--MSATFKGAD-GKDHYVQMGSYGIGA 321
             +  G +        +G+     T    + LP     T+  AD  K   V +    +G+
Sbjct: 405 EAAFYGPKLDVNVKPAIGNEITLSTCQLDFCLPAKFDLTYTDADSNKQTPVVIHRAILGS 464

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +    A I     G   +W   +AP ++ ++ +K  D       +K+   L+     V +
Sbjct: 465 LDRFMAYILEETKGNLPLW---LAPTQVKVLPVKNDDADLNAYAQKLVDALADADVRVEF 521

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK----HRLTGIREDMSLEEVIN 436
           D   E++G +   A +   P   ++G    ++  V  +    H  T ++ D  +E ++N
Sbjct: 522 DTRSEKLGYKMREAQIQKVPYLAVLGKNEEAEGTVSYRLHGEHGTTTVKFDEFVELIVN 580


>gi|167393549|ref|XP_001740621.1| prolyl-tRNA synthetase [Entamoeba dispar SAW760]
 gi|165895194|gb|EDR22941.1| prolyl-tRNA synthetase, putative [Entamoeba dispar SAW760]
          Length = 536

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 130/334 (38%), Gaps = 65/334 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   F++ I  +R+LP    Q     R E    +  +R+REFL ++ ++   T 
Sbjct: 143 PTSETIIYPAFKNWISGHRDLPIKVNQWCNVVRWEFSHPYPFIRTREFLWQEGHTAFATQ 202

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++   +++   Y  ++    L ++P+      I G  S         GET        
Sbjct: 203 IEAEKECHQILELYASVYE--DLLAVPV------IRGKKSK--------GET-------- 238

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             FP                      A Y+ T +         +P N     R ++    
Sbjct: 239 --FP---------------------GAYYSLTVEC-------IIPTN----GRSVQAATS 264

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  +S      F+  D K   V   S+G+ + R +   I +  D KGII P   A  
Sbjct: 265 HHLGQTFSKLFQIEFEDEDNKKQLVWQNSWGL-STRSIGVTIMTHGDNKGIIVPPRAAQK 323

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKV----GCDVFWD-DMGEQIGSQFAVADLLGFPL 402
           ++ +I +  H     D  +     L+++    G   F D +   + G +F+  ++ G P+
Sbjct: 324 QVVIITLH-HKGSPNDEMDAKAEELTQILLDNGIRAFADTNEMHKPGWKFSEYEMRGIPI 382

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++ +G +     KV I  R  G + + + E++I 
Sbjct: 383 RIELGPRDYEGKKVVIVRRDNGTKSESTWEDLIQ 416


>gi|316965047|gb|EFV49888.1| threonyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
          Length = 714

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 158/401 (39%), Gaps = 54/401 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + H+ S G   + P G    + +   +R++  + G  E+  P + ++ LW  SG +  Y 
Sbjct: 307 IFHELSPGSAFFFPRGAYIYNTLVEFLRKQYRKRGFREVITPNIYNSRLWETSGHWQHYA 366

Query: 91  KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           K M ++    +   ++G  P +      +F + +++Y+ LP  F    +  R+EL     
Sbjct: 367 KNMFKIEIEKE---LFGLKPMNCPGHCLMFATGLRTYKELPLRFADFGVLHRNELSGALS 423

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP--IGG 204
           G+ R R F   DA+ F    +    S  +  + +LR ++  LG  S+ +   + P    G
Sbjct: 424 GLTRVRRFQQDDAHIF--CRQDQIASEIEGCLDFLRFVYETLGF-SMKLYLSTRPDDFMG 480

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D     +   D  E Q+ C+ +    P      D               A Y    D+  
Sbjct: 481 D-----VKTWDEAEAQLQCALEKFKLPWTLNAGD--------------GAFYGPKIDI-- 519

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG---KDHYVQMGSYGIGA 321
             + D++    + +   ++          + LP+       D    K   V +    +G+
Sbjct: 520 -IVLDAMQRQHQCATIQLD----------FQLPVRFDLHYVDENHVKQRPVIIHRAVLGS 568

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVF 380
           +  + AV+  +  GK   WP  ++P +  +I +    D       +KI+    +   DV 
Sbjct: 569 IERMIAVLTENFAGK---WPFWLSPRQAMVIPVHPEFDDYALQVQQKIFDAGFECDVDV- 624

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             D  + +  +   A L  +   ++VG+K   +S V I+ R
Sbjct: 625 --DASDTMKKKIRNAQLGKWNFILVVGAKEKENSSVNIRTR 663


>gi|118475741|ref|YP_892822.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414967|gb|ABK83387.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 617

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/420 (20%), Positives = 162/420 (38%), Gaps = 63/420 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +   +       G   +  P +  +D W  SG Y +Y KE +   
Sbjct: 243 GLPIWLPNGARLRSRLEHKLYRTHRLRGYEPVRGPEILKSDAWKISGHYANY-KENMYFT 301

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S I+SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 302 VIDEQEYGIKPMNCVGHIKVYQSEIRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFT 361

Query: 157 MKDAYSFDLTPEGSKHSYNKM-----FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             DA+ F +  +  ++ Y  +      +S     + + + + P +A    +G D   E  
Sbjct: 362 QDDAHLFCMPSQIKENVYEILSFVDTLMSAFGFTYEMEISTKPAKA----VGDDAVWEIA 417

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A          KD +D        D           E   A Y    D+   K+ D+L
Sbjct: 418 TKA---------LKDALDEKGLKYGID-----------EGGGAFYGPKIDI---KITDAL 454

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--------HYVQMGSYGIGAMR 323
                   R  + G I      ++LP        D  +        H   MGS+     R
Sbjct: 455 -------KRKWQCGTI---QVDFNLPARFDLGYIDENNERKQPVMLHRAIMGSF----ER 500

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  ++E +  G+   W   +AP ++ +I I            ++++ L  +  D    +
Sbjct: 501 FIGILLEHTA-GELPFW---IAPTQVVIIPISNEHH---KYANEVHSLLLDMDVDSEIFN 553

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E +  +   A+    P+ +++G   V++  V ++ R    ++DMSL+E + +   + +
Sbjct: 554 KNETLNKKIRTAEKQRVPMIIVLGDNEVTNRGVALRDRRAREQKDMSLDEFLGFIQSKLN 613


>gi|45190711|ref|NP_984965.1| AER105Wp [Ashbya gossypii ATCC 10895]
 gi|44983690|gb|AAS52789.1| AER105Wp [Ashbya gossypii ATCC 10895]
          Length = 457

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 8/154 (5%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSA 77
           E++S + +  T  I   S G   +LP G K  + +   ++ ++QN+ G  E+  P +   
Sbjct: 39  EVSSRQDLYLTDPI---SPGSTFFLPNGTKVFNKLIQFMKLQQQNKFGFQEVITPLIYRK 95

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            LW +SG +++Y  +M R+   +     YG  P +      +F+   +SY  LP  F   
Sbjct: 96  SLWEQSGHWENYKDDMFRVEGNDCAKEEYGLKPMNCPGHCVMFKRFDRSYTELPLRFSDF 155

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
               R+E      G+ R R+F   D + F  TPE
Sbjct: 156 SPLHRNEASGALSGLTRVRKFHQDDGHIF-CTPE 188


>gi|37526560|ref|NP_929904.1| threonyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|73919813|sp|Q7N3P6|SYT_PHOLL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|36785991|emb|CAE15043.1| threonyl-tRNA synthetase (threonine--tRNA ligase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 642

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/394 (19%), Positives = 141/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    +W  +G +++YG+
Sbjct: 256 MQEEAPGMAFWHNDGWTIFRELETFVRTKLKEYQYQEVKGPFMMDRVMWERTGHWENYGE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCV-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E      +        ++   G + I ++  + P     + E 
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIHREVSSCIKMVYDVYSTFGFEKIVVKLSTRPEKRIGTEEQ 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+                 P E   +   I                       L D 
Sbjct: 434 WNQAEESLAAALQENGVQFEYQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAA 327
           L        R  + G +      +SLP  +SA++ G + +    V +    +G++     
Sbjct: 474 LD-------RAWQCGTV---QLDFSLPGRLSASYVGENNERKVPVMIHRAVLGSLERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    +P  +AP ++ ++NI        D  +++  +L   G     D   E+
Sbjct: 524 ILTEEYAG---FFPTWIAPQQVVVMNITDSQA---DYVQELVKKLQDAGIRAKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++ G K V   KV ++ R
Sbjct: 578 IGFKIREHTLRRVPYMLVCGEKEVESGKVSVRTR 611


>gi|227432351|ref|ZP_03914343.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351872|gb|EEJ42106.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 652

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   I +++   G   +  P L + +L+  SG +D Y ++M    
Sbjct: 266 GLPVWLPNGATIRRQVERYITDKELSNGYQHVYTPVLSNLNLYKTSGHWDHYREDMFPPM 325

Query: 98  DRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  D   +       P+H  +M  +F    +SYR LP    ++ +  R E      G+ R
Sbjct: 326 DMGDGEFLELRPMNCPSH--IM--VFNHKPRSYRELPMRIAELGMMHRYEKSGALTGLSR 381

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            RE  + D ++F + PE  +  +  +    + ++    +K+   R
Sbjct: 382 VREMTLNDGHTF-VEPEKLEEEFKSILTMMMGVYRDFNIKNYRFR 425


>gi|226226691|ref|YP_002760797.1| threonyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226089882|dbj|BAH38327.1| threonyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 660

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 14  NPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N  +A+   H+++   L    I   + G   W P G    + +   +RE Q      E+ 
Sbjct: 239 NLEEAKKRDHRVLGKALGLFQIFPQAPGAAFWTPKGTTLYNTLEGFVRERQQEAFQ-EIK 297

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
            P L +  LW +SG +  Y + M  + D    +  M   P +      +F S   SYR +
Sbjct: 298 TPLLYNKKLWEQSGHWGKYKENMFLVLDNETGEHDMSLKPMNCPSHHVLFASEKHSYRQM 357

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           P  F    +  R+EL     G+ R R+F   D + +
Sbjct: 358 PVRFVTFDVLHRNELSGALSGLTRVRQFSQDDCHVY 393


>gi|197097988|ref|NP_001125825.1| threonyl-tRNA synthetase, cytoplasmic [Pongo abelii]
 gi|55729334|emb|CAH91401.1| hypothetical protein [Pongo abelii]
          Length = 563

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 164/418 (39%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 174 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 233

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 234 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 292

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 293 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 348

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 349 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 385

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 386 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 434

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 435 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 488

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  + L ++VG K      V I+ R   +  + ++ E I
Sbjct: 489 DIDLDP-GCTLNKKIRNAQLAQYNLILVVGEKEKISGTVNIRTRDNKVHGERTISETI 545


>gi|330935757|ref|XP_003305117.1| hypothetical protein PTT_17864 [Pyrenophora teres f. teres 0-1]
 gi|311318063|gb|EFQ86830.1| hypothetical protein PTT_17864 [Pyrenophora teres f. teres 0-1]
          Length = 528

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 13/142 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G    LP G      + + +R +  + G  E+  P +    LW +SG +++Y ++M 
Sbjct: 74  YSPGSPLILPNGAYVFQKLQSFLRAQYPQFGFQEVITPIIYKKSLWEKSGHWENYAEDMF 133

Query: 95  RLADRNDKAMI----------YG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            +  R   A I          +G  P +      +FR  IKSYR+LP          R+E
Sbjct: 134 SVQGRGTTAQIPEAEGGEDGEFGLKPMNCPGHCLLFRDEIKSYRDLPVRLADFSALHRNE 193

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
           +     G+ R R F   DA+ F
Sbjct: 194 ISGALTGLTRVRRFHQDDAHIF 215


>gi|283955362|ref|ZP_06372861.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283793122|gb|EFC31892.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 602

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/447 (20%), Positives = 175/447 (39%), Gaps = 51/447 (11%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGAELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S+++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSNVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV +
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDN 372

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +++F                   D S+E  +   T   +     +  +    +     D
Sbjct: 373 LMKLF-------------------DFSYEMEI--STKPEKAIGDDEIWEVATKALKEALD 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+   K+ D+L        R  + G I      ++LP   
Sbjct: 412 EQGLKYGIDEGGGAFYGPKIDI---KITDAL-------KRKWQCGTI---QVDFNLPNRF 458

Query: 301 TFKGADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
             +  D    K   V +    +G+      ++     G+   +P  +AP  I ++ I +A
Sbjct: 459 KLEYTDSNNEKKQPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPTAIGIVPIGEA 515

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H    ++    I   L K   D    +  E +  +  +A+    P+ +++G   V+   V
Sbjct: 516 HIAYAKE----IQKELLKFNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSV 571

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R    ++++SL+E I     + S
Sbjct: 572 ALRDRRAKEQKNLSLDEFIKLVKEKMS 598


>gi|302404307|ref|XP_002999991.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261361173|gb|EEY23601.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 790

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 17/165 (10%)

Query: 15  PRDAEIASHKLMLRTG---------------MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           P   E+A+HK  L                    H+ S G   WLP G +  + + A I+E
Sbjct: 314 PSKKELAAHKKWLEEAAARDHRKLGEQQQLFFFHELSPGSAMWLPHGARIYNTLMAYIKE 373

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +  +    E+  P + ++DLW  SG +  Y  +M  + D + +     P +      +F 
Sbjct: 374 QYFKRDYHEVITPNMYNSDLWKVSGHWAHYKDDMF-VMDVDKEQFALKPMNCPGHCLMFG 432

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              K+Y  LP+      +  R+E      G+ R R F   DA+ F
Sbjct: 433 HAPKAYHQLPWRVADFGVLHRNEASGALSGLTRVRRFQQDDAHIF 477


>gi|169351009|ref|ZP_02867947.1| hypothetical protein CLOSPI_01786 [Clostridium spiroforme DSM 1552]
 gi|169292071|gb|EDS74204.1| hypothetical protein CLOSPI_01786 [Clostridium spiroforme DSM 1552]
          Length = 606

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 6/177 (3%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +++ G+  +LP G    + +     EE  + G + +  P + S +LW  SG + +Y 
Sbjct: 224 MMSEYAPGMPIFLPKGMILRNTLEQFWYEEHTKEGYVFIKTPIMMSRELWETSGHWANYK 283

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            +M   +  +D+     P +      ++++ + SY++LP    ++    R E      G+
Sbjct: 284 DDMY-TSMVDDREFAIKPMNCPGSLLVYKNGLHSYKDLPLRMGELGQVHRHEASGALNGL 342

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIG 203
            R R F   DA+ F +TP+  +    K+     R+++ L L     +  R E   IG
Sbjct: 343 FRVRTFTQDDAHIF-MTPDQIESEIIKLINFIDRVYNSLNLSYEIELSTRPEEKYIG 398


>gi|254796675|ref|YP_003081511.1| threonyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589907|gb|ACT69269.1| threonyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 647

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 6/197 (3%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L  L E  R    A  K M     + + ++G   W   G      +   IR +      
Sbjct: 234 YLSFLHEAKRRDHRAIGKTM-ELFHLQEEAQGQVFWHENGFLLYRVLENYIRSKLKAHDY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + S  LW  SG +  + KE + +   +D      P +     ++F+  +KSYR
Sbjct: 293 REVKTPVVYSKCLWERSGHWSKF-KENMFVIRSDDGEFSLKPMNCPAHIEVFKQSLKSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-I 184
           +LP    +  +  R+E      G+MR R F+  DA+ F  TPE         F   L+ +
Sbjct: 352 DLPLRLAEFGMCHRNEASGALHGLMRVRGFVQDDAHIF-CTPE-QICDETVAFCELLKEV 409

Query: 185 FHRLGLKSIPMRAESGP 201
           +  LG   + +R    P
Sbjct: 410 YRDLGFTEVEVRFSDRP 426


>gi|161528434|ref|YP_001582260.1| threonyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|238686913|sp|A9A2B1|SYT_NITMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160339735|gb|ABX12822.1| threonyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 621

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 132/331 (39%), Gaps = 48/331 (14%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SY+NLP+  Y++ +  FR E      G+ R R F M D ++F                  
Sbjct: 307 SYKNLPYKLYELTRYSFRREQSGELVGLRRLRAFTMPDCHAF------------------ 348

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                    K IP   +   +  DLS   +      E+    +  F +       +  ++
Sbjct: 349 --------CKDIPQAVDEIKVRFDLSQSVLKELGIDESDYDMAIRFTEDFYNENKSAIEE 400

Query: 242 IISLNS---IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           ++  +    +VE W   +            D+L +   +S   I+V +    G +Y +  
Sbjct: 401 LVKKHGRPVLVEMWKEKFFYFVLKWEFNFIDNLGKASALSTDQIDVEN----GDRYGIEF 456

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHD----GKGIIWPDSVAPFKISLIN 353
                 A    H + + +   GA+ R++ A++E + D    GK    P  +AP ++ +I 
Sbjct: 457 VDENNTAQ---HPIILHNSPSGAIERIIYALLEKAADDSKKGKKPQLPLWLAPTQVRIIP 513

Query: 354 IKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +K      C + C+KI A+   V  DV  DD  E IG +   A+       +++G K   
Sbjct: 514 LKEEFYDFCNNLCDKISAQ--NVRVDV--DDRNESIGKRIREAEKEWIQYILVIGEKEAG 569

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              + I+ R TG   ++S ++ +N  + + S
Sbjct: 570 SENLSIRDRQTGNVREVSFDDFMNEINEQTS 600


>gi|49475537|ref|YP_033578.1| threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|73919770|sp|Q6G3K1|SYT_BARHE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49238343|emb|CAF27567.1| Threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 658

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 175/449 (38%), Gaps = 59/449 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+   +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMNLFHFQEEGPGMIFWHKKGWKMFQNLINYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTD 116
           +     E++ P +    LW  SG ++ Y + M +    A+  D   +Y   P +      
Sbjct: 289 DDHQYAEVNAPQVLDRSLWEISGHWEWYKENMFKAIPAAEDWDNENVYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +    N
Sbjct: 349 IFKHGLKSYRDLPTRIAEFGVVHRYEPSGSLHGLMRVRCFTQDDAHIFCTDEQLADECLN 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            +    L  +   G K I ++  + P   +G D       L D  E       + M+   
Sbjct: 409 -INDLILSTYADFGFKEISLKLSTRPEKRVGSD------ALWDHAE-------NIME--- 451

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                      S+   +E  +A    TS +  E  F   P+ +      I  G  +  GT
Sbjct: 452 -----------SVLKTIETKSAGQIKTSILPGEGAFYG-PKFEYTLKDAI--GREWQCGT 497

Query: 293 K---YSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAP 346
               ++LP   +A +   D +     M    I G+M     ++  +  G   +W    AP
Sbjct: 498 TQLDFNLPERFNAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFSGHMPLW---FAP 554

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +I +  I +      +  +K+ A+L  VG     D   E+I  +     L   P+ ++ 
Sbjct: 555 EQIVVATITSE---ANEYAKKLTAKLKSVGLSTTLDLRNEKINYKIREHSLQKVPVILVC 611

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +    + V ++   +  +  +S+EEVI
Sbjct: 612 GKRESETNSVNMRRLGSTEQIFLSVEEVI 640


>gi|153009484|ref|YP_001370699.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|151561372|gb|ABS14870.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 661

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ + +R   + 
Sbjct: 238 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYG--PTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++    D  D   ++   P +      IF
Sbjct: 294 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHVMIF 353

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 354 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 412

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 413 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 443


>gi|108758923|ref|YP_631780.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|122981032|sp|Q1D6E3|SYT_MYXXD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108462803|gb|ABF87988.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 642

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 26/191 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H +S G   W P G      ++  +R+     G +E+  P + +  LW  SG +  Y +
Sbjct: 261 FHPYSPGSAFWTPKGTTLYTTLSNWMRQLTQNDGYVEIKTPLMFNKGLWETSGHWGKYKE 320

Query: 92  EMLRLADRNDKAMIYG------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            M  + D       +       P+H       F+ H  SYR+LP  ++   +  R+E   
Sbjct: 321 NMFLVLDSESGEHDFSLKPMNCPSHHLFYG--FKKH--SYRDLPLRYHTQDVLHRNEAAG 376

Query: 146 RF-GVMRSREFLMKDAYSF----DLTPEGSK------HSYNKMFVSY-----LRIFHRLG 189
              G+ R R+F   DA+ +     +T E  +      H Y  + ++Y      R   RLG
Sbjct: 377 SLGGLTRVRQFAQDDAHIYCTEAQITDEVRRFVKLLDHVYKAVGLTYAVKLSTRPEQRLG 436

Query: 190 LKSIPMRAESG 200
             S+  RAE G
Sbjct: 437 DDSLWDRAEGG 447


>gi|50310653|ref|XP_455348.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644484|emb|CAG98056.1| KLLA0F05918p [Kluyveromyces lactis]
          Length = 744

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            ++ S G   WLP G +  + +  ++R E  + G  E+  P + ++ LW  SG + +Y +
Sbjct: 351 FNEMSPGSCFWLPHGTRIYNTLVDLLRSEYRKRGYDEVITPNMYNSKLWETSGHWANYKE 410

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F++  +SYR LP+      +  R+E      G+ 
Sbjct: 411 NMFSF-EVEKETFGLKPMNCPGHCLMFKARERSYRELPWRVADFGVIHRNEFSGALSGLT 469

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 470 RVRRFQQDDAHIF 482


>gi|257467995|ref|ZP_05632091.1| threonyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062281|ref|ZP_07926766.1| threonine-tRNA ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313687957|gb|EFS24792.1| threonine-tRNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 637

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 98/459 (21%), Positives = 185/459 (40%), Gaps = 68/459 (14%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + K +L +L+E    AE   H+ +   L    + ++  G   +LP G    + +  + R 
Sbjct: 226 KLKAYLTLLEE----AERRDHRKLGKELDLFFVSEYGPGFPIFLPKGMVIRNTLIDLWRR 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    G  E++ P + + +LW  SG + +Y +E +  +  ++      P +       ++
Sbjct: 282 EHTLAGYQEITTPIMLNKELWEISGHWFNY-RENMYTSTIDETEFAIKPMNCPGGILAYK 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE-------GSK 171
             + SY++ P    ++    R E      G+MR R F   DA+ F +TP+       G  
Sbjct: 341 YQLHSYKDFPIRCGELGTVHRHEFSGALHGLMRVRSFTQDDAHIF-MTPDQIEEEIIGVV 399

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
              +K +       + + L + P +A    IG +       + +  E  +  + D +  P
Sbjct: 400 ELIDKFYSKLFGFEYHIELSTKPEKA----IGSN------EIWEKAEAALAGALDKIGKP 449

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                 D               A Y    D    K+ D++        R  + G I    
Sbjct: 450 YKLNPGD--------------GAFYGPKLDF---KIKDAI-------GRTWQCGTI---Q 482

Query: 292 TKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP     ++ G DG+ H  V +     G++     ++     G   +W   +AP +
Sbjct: 483 LDFNLPERFDISYIGEDGEKHRPVMIHRVVYGSIERFIGILIEHFAGAFPLW---LAPTQ 539

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVG 407
           + ++ I  +D+V   A E I+  L + G     DD  E IG +   A+     P+Q+I+G
Sbjct: 540 VKILTI--NDEVVPYAKE-IFKALQERGIRAEIDDRAESIGYKIREANGKYKVPVQLILG 596

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRF 442
              V + +V I+   +  +E M L+E    +++ A  RF
Sbjct: 597 KNEVENREVNIRKFGSQQQESMKLDEFLDIIVDEAKIRF 635


>gi|319783887|ref|YP_004143363.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169775|gb|ADV13313.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 658

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/418 (20%), Positives = 153/418 (36%), Gaps = 52/418 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G K   N+   +R   +  G  E++ P +    LW  SG +  Y   
Sbjct: 260 QEEGPGVVFWHAKGWKMFQNLVNYMRRRLDEQGYQEVNAPQVLDKSLWETSGHWGWYRDA 319

Query: 93  MLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M ++        +D+     P +      IF+  +KSYR+LP    +     R E     
Sbjct: 320 MFKVTVAGDDTDDDRVFALKPMNCPGHVQIFKHGLKSYRDLPVKLAEFGNVHRYEPSGAL 379

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IG 203
            G+MR R F   DA+ F  T E       ++    L  +   G   I ++  + P   +G
Sbjct: 380 HGLMRVRGFTQDDAHIF-CTEEQLAAECLRINDLILSTYADFGFDEISVKLSTRPDKRVG 438

Query: 204 GD--LSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDFD---DIISLNSIVEQWTAPYA 257
            D    H   ++    ET    S + +   I P E   +    + +  ++I  +W     
Sbjct: 439 TDEAWDHAEAIMGGVLETIRTRSGNRIKTSINPGEGAFYGPKFEYVLKDAIGREWQ---C 495

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T+ V       +LPE  R  A        FY G+               K   V +   
Sbjct: 496 GTTQVDF-----NLPE--RFGA--------FYIGSDSE------------KKQPVMVHRA 528

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G+M     ++  ++ G   +W    AP ++ +  I +      D   ++ A+L   G 
Sbjct: 529 ICGSMERFLGILIENYSGHFPLW---FAPLQVVVATITSD---ADDYATEVVAKLKAAGL 582

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               D   E+I  +     L   P+ ++ G +   +  V ++   +  +E + L++ I
Sbjct: 583 LAEADLRNEKINYKVREHSLAKVPVILVCGKREAEEQTVNMRRLGSRDQESLGLDQAI 640


>gi|258512139|ref|YP_003185573.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478865|gb|ACV59184.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 648

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/404 (20%), Positives = 167/404 (41%), Gaps = 37/404 (9%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  WLP G K    +   I + +   G   +  P L + +L+  SG ++ Y  +M  
Sbjct: 262 GQGLPLWLPNGAKIRRIIERYIVDLEESLGYQHVYTPHLANVELYKISGHWEHYKDDMYP 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +++ ++  P +      +++  + SYR LP    ++    R E+     G+ R R 
Sbjct: 322 PMKIDNEELVLRPMNCPHHMMVYKHRLHSYRELPIRIAELGTMHRYEMSGALAGLQRVRA 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + DA+ F   P+  +  +  +     R++   G+     R         LS+      
Sbjct: 382 MTLNDAHIF-CRPDQIEQEFTGVVRLIQRVYKDFGIDDYYHR---------LSYR----- 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPE 273
           D   T+ +   D M     S        + L  +  E   A Y    DV   ++  +L +
Sbjct: 427 DPKNTEKYVQNDEMWELAQSTLRKVMLDLGLEFVEAEGEAAFYGPKLDV---QVRTALGK 483

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAM-RVVAAVIES 331
           ++ +S   ++    F+   +++L     + G DG+ H   +   G +G M R VA +IE 
Sbjct: 484 DETLSTIQLD----FHLPNRFNL----EYVGEDGERHRPVVIHRGVVGTMERFVAFLIEQ 535

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
               KG  +P  +AP ++ + ++   D+    A E++ A+L ++G     D    +IG +
Sbjct: 536 Y---KG-AFPTWLAPTQVVVASVA--DEFAGYA-EEVAAKLRELGIRAEADVSDNKIGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A     P  ++VG++   +  V ++    G    M L++ +
Sbjct: 589 IRQAQTHKIPYTLVVGAREREEGSVSVRKYQAGDLGAMPLDQFV 632


>gi|111219789|ref|YP_710583.1| threonyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111147321|emb|CAJ58970.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) [Frankia alni
           ACN14a]
          Length = 682

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 2/160 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G    D +    R+ + R G   +  P +   DL+  SG    Y +++   
Sbjct: 281 KGLPLWLPNGTIIRDELEGWARQTERRLGYRRVVTPHITQEDLYFLSGHLPYYAEDLYAP 340

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
                +     P +      ++++  KSYR LP+   +    +R E   +  G+MR+R F
Sbjct: 341 IQIEGENYYLKPMNCPHHHMVYKARPKSYRELPYKIAEYGTVYRFERSGQLHGLMRARGF 400

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              DA+ +  T E +K  + ++   +   +  LG+    M
Sbjct: 401 TQNDAHIY-CTREQAKEQFLEVMRMHDEYYRALGITDFYM 439


>gi|242081969|ref|XP_002445753.1| hypothetical protein SORBIDRAFT_07g025100 [Sorghum bicolor]
 gi|241942103|gb|EES15248.1| hypothetical protein SORBIDRAFT_07g025100 [Sorghum bicolor]
          Length = 508

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++     TF+   G    V   S+     R +  ++ +  D KG
Sbjct: 243 TGRGIQGATSHCLGQNFAKMFDITFENEKGVREMVWQNSWAY-TTRSIGVMVMTHGDDKG 301

Query: 338 IIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
           ++ P  VAP ++ +I +   D      + ACE     L++ G     D       G +++
Sbjct: 302 LVLPPKVAPIQVIVIAVPYKDADTTAIKGACESTVYTLNESGIRADQDTRENYSPGWKYS 361

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             ++ G PL++ +G K +++ +V I  R  G + D+ +  ++
Sbjct: 362 HWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPVTNLV 403



 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F   I+S+R+LP    Q     R E       +RSREFL ++ ++   T 
Sbjct: 131 PTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 190

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y RI+   
Sbjct: 191 EEADEEVLQILELYRRIYEEF 211


>gi|304309881|ref|YP_003809479.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301795614|emb|CBL43813.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 647

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 5/169 (2%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           + HQ  +  G+  W P G      V   +R+    +G  E+  P +    LW +SG +++
Sbjct: 264 LFHQQEEAPGMVFWHPKGWAIWQKVEQYVRKVYRESGYQEVRGPQILDVSLWKKSGHWEN 323

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           Y + M    +   +     P +      I+ + + SYR LP  + +     R+E      
Sbjct: 324 YQENMF-FTESEKRTYAVKPMNCPGHVQIYNNTLHSYRELPIRYAEFGGCHRNEPSGALH 382

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           G+MR R F   D + F  T +  +          ++++   G ++I ++
Sbjct: 383 GIMRVRAFTQDDGHIF-CTEDQVQAEVTAFHRQAMKVYADFGFENISVK 430


>gi|237750837|ref|ZP_04581317.1| threonyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229373282|gb|EEO23673.1| threonyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 612

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 7/181 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++           +  P +  +D+W  SG Y  Y KE +   
Sbjct: 232 GLPIWLPKGARLRRRIEELLTRALILNEYEPVRCPEILKSDVWKISGHYTHY-KENMYFT 290

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      ++++ I+SYR LP  FY+  +  R E      G++R REF 
Sbjct: 291 TIDEVEYGIKPMNCVGHIKVYQNSIRSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFT 350

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F   PE  ++  N +     +I +  G  S  M   + P   IG D   E   L
Sbjct: 351 QDDAHIF-CRPEQIENEVNNILRFTHKIMNAFGF-SYEMELSTRPEQSIGEDSVWESATL 408

Query: 214 A 214
           A
Sbjct: 409 A 409


>gi|328955410|ref|YP_004372743.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Coriobacterium
           glomerans PW2]
 gi|328455734|gb|AEB06928.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Coriobacterium
           glomerans PW2]
          Length = 643

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 18/146 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  +   G+  +LP G + +  +   +  E  R G  E+  P +  +D+W  SG Y  Y 
Sbjct: 258 MFDEAGPGLPLYLPAGARVIRLMETWLSRELYRRGYQEVITPHIYKSDVWKTSGHYGYYR 317

Query: 91  KEML------------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
             M             RL++   K M   P H      I+++ + SYR LP  +++    
Sbjct: 318 DNMYFFNINEGTAEEPRLSEFGVKPM-NCPGH----VLIYKNDLHSYRELPIRYFEFGTV 372

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSF 163
           +R EL     G+ R+R F   DA+ F
Sbjct: 373 YRHELSGAVNGLFRARGFTQDDAHVF 398


>gi|284166458|ref|YP_003404737.1| prolyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284016113|gb|ADB62064.1| prolyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 493

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 4/135 (2%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++     TF   D ++      S+G+ + R + A+I +  D +G++ P ++AP ++
Sbjct: 237 LGQSFAEAFDITFVDEDEEERTAYTTSWGL-SWRALGALIMTHSDDQGLVLPPTIAPTQV 295

Query: 350 SLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIV 406
            ++ I   D  +   +  E I   L   G  V  DD  E+  G +F   +L G PL++ +
Sbjct: 296 VIVPIWQEDTKEDVLEYSENIADELEDAGFRVELDDRDERNPGFKFNEHELNGVPLRLEI 355

Query: 407 GSKFVSDSKVEIKHR 421
           G   V D +V + HR
Sbjct: 356 GPYEVEDEEVTMVHR 370


>gi|868027|gb|AAC43605.1| threonyl-tRNA synthetase [Buchnera aphidicola]
 gi|1098080|prf||2115235B Thr-tRNA synthetase
          Length = 642

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 4/178 (2%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE-QNRTGAIEMSVPTLQSADLWVESG 84
           +L    + + S G+  W   G    + +   +RE+ +      E+  P L    +W +SG
Sbjct: 249 LLNLYHMQKESPGMIFWHNNGWIIFNELEIFVREKLKGIINYKEVKTPLLIHKSIWQKSG 308

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            +D+Y   +   +  N +  I  P +      IF   +KSYR+LP    +     R+E  
Sbjct: 309 HWDNYQDRIFTTSSENREYCI-KPMNCPGHVQIFNCGLKSYRDLPIRMAEFGSCHRNESS 367

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
               G+MR R F   DA+ F  T E  ++  N        ++     K I ++  + P
Sbjct: 368 GSLHGLMRIRNFTQDDAHIF-CTQEQLRYEINNCIKMIYDLYSTFNFKKILVKFSTRP 424


>gi|268567760|ref|XP_002647866.1| C. briggsae CBR-PRS-2 protein [Caenorhabditis briggsae]
          Length = 258

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 40/222 (18%)

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           K+  ++A+SG  GG +SHE+ V +   E       DF+D+                +  +
Sbjct: 4   KTYQVQADSGIHGGHISHEYHVRSSLEE-------DFVDY-----------CTQCGTFSK 45

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           + T    +      +K+              +E+ H F+ GTKYS  + A F+   GK  
Sbjct: 46  EETPKMCSRCSASPQKI------------ASVEIAHTFHLGTKYSEALGAKFQ---GKPF 90

Query: 311 YVQMGSYGIGAMRVVAAVIE-SSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKI 368
           Y  M  +GIG  R++ A I+  S   K +  P +++PF   +I  K+    V  +     
Sbjct: 91  Y--MCCFGIGVSRLLPATIDLLSVSDKALRLPRAISPFDAVIIVKKSLMSNVIVEMTSSS 148

Query: 369 YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSK 409
            +R  K G  +  DD  E   G +   A+ LG P  +++ ++
Sbjct: 149 ASRYLKGG--ILLDDRIEMSPGKRIHEANRLGIPFIIVLANE 188


>gi|297538938|ref|YP_003674707.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258285|gb|ADI30130.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 635

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/408 (19%), Positives = 150/408 (36%), Gaps = 50/408 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W P G      V   +R+        E+  PT+    LW +SG + +Y +E + 
Sbjct: 259 APGMVFWHPRGWSIWQEVEQYMRKMFRDYNYQEVRTPTIMDRTLWEKSGHWQNY-REGMF 317

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           +     +     P +      IF S + SYR+LP    +     R+E      G+MR R 
Sbjct: 318 VTSSESRDYAVKPMNCPGHVQIFNSSLHSYRDLPLRLAEFGSCHRNEPSGSLHGLMRVRG 377

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  T E  +           + +   G   + ++  + P             
Sbjct: 378 FTQDDAHIF-CTEEQVEAEVADFIKMLYKAYGDFGFNDVLVKLSTRP------------- 423

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-KLFDSLPE 273
              E ++    D+         T   + + LN++  ++     A      E  L DSL  
Sbjct: 424 ---EKRIGTDADW-----DKAETSLANALKLNNLDFEYQPGEGAFYGPKIEFTLKDSL-- 473

Query: 274 NKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
                      G ++  GT     +LP  + A +   D  + H V +    +G+M     
Sbjct: 474 -----------GRLWQCGTIQLDPNLPERLGAEYVAEDNSRKHPVMLHRAIVGSMERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++  ++ G   +W   +AP ++ ++NI  +     D   ++   L K G    +D   E+
Sbjct: 523 ILIENYAGAMPLW---LAPVQVMVLNISENQA---DYVRQVVEMLKKNGIRCEFDLRNEK 576

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           I  +     +   P  ++ G + +    V ++ R       M +E +I
Sbjct: 577 ITYKIREHSMQKMPYLLVAGEREMQTGHVAVRTRKGEDLGSMPIEALI 624


>gi|219871154|ref|YP_002475529.1| threonyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|254783524|sp|B8F5H9|SYT_HAEPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219691358|gb|ACL32581.1| threonyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 643

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/394 (19%), Positives = 144/394 (36%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F + PE  +            I+   G ++I ++  + P     + E 
Sbjct: 375 RVRGFTQDDAHIFCM-PEQVESEVTSCIKMVYDIYSTFGFENIQVKLSTRPANSIGTDEM 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+  +     + + + F I      F                Y    +       D 
Sbjct: 434 WNKAE-ADLAAALTANGLAFEIQEGEGAF----------------YGPKIEFALRDCLD- 475

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
                    R  + G I      + LP  +SA++   D       M    I G++     
Sbjct: 476 ---------REWQCGTI---QLDFFLPERLSASYVAEDNDRKTPVMIHRAILGSIERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +I   + G    +P  +AP +  ++NI        +  +++  +LS  G  V  D   E+
Sbjct: 524 IITEEYAG---FFPAWLAPVQAVVMNITDSQA---EYVQQVVKQLSDAGLRVKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +G +     L   P  ++ G K +++ KV ++ R
Sbjct: 578 VGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTR 611


>gi|62185526|ref|YP_220311.1| threonyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|73919780|sp|Q5L4T1|SYT_CHLAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62148593|emb|CAH64365.1| threonyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 635

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 159/429 (37%), Gaps = 52/429 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  +   KL L +    + S G+  + P G    D +    +      G  E+  P L 
Sbjct: 236 RDHRVLGMKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRLHQLAGYKEIQTPQLM 293

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           S  LW  SG + +Y + M  L   ++   I  P +       +++ + SY+  P    +I
Sbjct: 294 SRSLWEVSGHWSNYRENMYTLKIEDEDYAI-KPMNCPGCMLYYKTRLHSYKQFPLRIAEI 352

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--- 191
               R E+     G+MR R F   DA+ F LTPE  +     +      ++   GL+   
Sbjct: 353 GHVHRYEVSGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILHLVSELYSTFGLEYHL 411

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            +  R E   IG D   E    A             ++  + + +T F  II+       
Sbjct: 412 ELSTRPEKATIGSDELWELATAA-------------LERALVNSHTPF--IINPGD---- 452

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG- 307
             A Y    D+H           K    R  + G I    +   ++ L     +  A G 
Sbjct: 453 -GAFYGPKIDIH----------VKDAIQRTWQCGTIQLDMFLPERFEL----EYTNAQGE 497

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   V +     G++     ++     G+  +W   ++P  I +I +    Q      +K
Sbjct: 498 KSTPVMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHIRVITVADRHQ---PRAQK 551

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +     K+G  V  DD  E +  +   A  +     V +G + +  + + I+ R   +  
Sbjct: 552 LATAWQKLGFVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEQNTLAIRTRDNRVLN 611

Query: 428 DMSLEEVIN 436
           DM+ ++ +N
Sbjct: 612 DMTEDKFLN 620


>gi|302528111|ref|ZP_07280453.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302437006|gb|EFL08822.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 415

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 2/155 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP G      +   +RE + R G   +S P L   +L+  SG +  Y ++M    
Sbjct: 36  GLPYLLPDGAAIRHVLEEYVREVERRAGYQHVSSPVLGKRELYELSGHWAHYREDMFPPM 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-RSREFL 156
           D   + ++  P+       I+RS   S+R LP    ++   +R EL    G + R R   
Sbjct: 96  DLGGEQVVLRPSLCPHHALIYRSRAHSHRELPLRLAELGGMYRAELSGVLGGLSRVRAIQ 155

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           + DA+ F L PE              R+   LGLK
Sbjct: 156 LNDAHIFCL-PEQVGAEVRGALELIRRVCQDLGLK 189


>gi|289642063|ref|ZP_06474216.1| threonyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289508136|gb|EFD29082.1| threonyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 610

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 144/397 (36%), Gaps = 53/397 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  WLP G    D +    RE +   G   +  P +  +DL+  SG    Y  ++   
Sbjct: 221 KGLPLWLPNGTIVRDELETWAREVERAHGYQRIVTPHITKSDLYYISGHLPYYADDLYSP 280

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREF 155
            D + +     P +      ++++  +SYR LP    +    +R E   + FG+MR R F
Sbjct: 281 IDIDGEEYYLKPMNCPHHHMVYKARPRSYRELPLRLAEYGTVYRYERSGQLFGMMRVRGF 340

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ +  T E +   +  +   +   + +LG++                H  + L D
Sbjct: 341 SQNDAHIY-CTREQAIDEFLAVMRLHALYYDKLGIEDY--------------HMVLALRD 385

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              T+ +   + M         D          +EQ   PY    D+     +    +  
Sbjct: 386 PKNTEKYHGDELMWQEAERITRD---------AMEQSGIPY--IEDIGGAAHYGPKVDFV 434

Query: 276 RVSARGIEVGHI-----FYFGTKYSLPMSATFKGADGKD------HYVQMGSYGIGAMRV 324
             S  G E          Y   ++ L    TF    G+       H   +GS+     R 
Sbjct: 435 LTSVTGREFAASTNQVDLYMPEQFGL----TFTNRHGEAEQAVVLHRAPLGSH----ERF 486

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VA +IE    G   +W   +AP ++ ++ I        D    ++ RL   G     DD 
Sbjct: 487 VAFLIE-HFAGAFPVW---LAPVQVRVVPISDRQA---DGAAAVWRRLVDAGIRAELDDS 539

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + ++   A+    P   ++G + + +  V ++ R
Sbjct: 540 DNTMQAKIRRAEQQKVPYVAVIGDRELENDSVSVRAR 576


>gi|187477891|ref|YP_785915.1| threonyl-tRNA synthetase [Bordetella avium 197N]
 gi|123738749|sp|Q2L2M5|SYT_BORA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115422477|emb|CAJ49002.1| threonyl-tRNA synthetase [Bordetella avium 197N]
          Length = 650

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      V   +R      G  E+  P +    LW ++G +D+Y + M    
Sbjct: 266 GLIFWHPKGWTLWQQVEQYMRAVYRDNGYQEVKAPQILDLSLWKKTGHWDNYRENMFTTE 325

Query: 98  DRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             N    +YG  P +      IF + + SYR LP  + +     R+E      G+MR R 
Sbjct: 326 SEN---RVYGLKPMNCPGHVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRVRG 382

Query: 155 FLMKDAYSF 163
           F   D + F
Sbjct: 383 FTQDDGHIF 391


>gi|169621989|ref|XP_001804404.1| hypothetical protein SNOG_14207 [Phaeosphaeria nodorum SN15]
 gi|111057324|gb|EAT78444.1| hypothetical protein SNOG_14207 [Phaeosphaeria nodorum SN15]
          Length = 542

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--- 99
           LP G      + + +R +  + G  E+  P +    LW +SG +++Y ++M  +  R   
Sbjct: 96  LPNGAYVFQKLQSFLRAQYPQFGFQEVITPIIYKKSLWEKSGHWENYAEDMFSVQGRGAT 155

Query: 100 --NDKAMI-----YG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
              +KA +     +G  P +      +FR  IKSYR+LP  +       R+E+     G+
Sbjct: 156 GQTEKAQVGEDEEFGLKPMNCPGHCLLFRDEIKSYRDLPIRYADFSALHRNEVSGSLTGL 215

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 216 TRVRRFHQDDAHIF 229


>gi|160878906|ref|YP_001557874.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160427572|gb|ABX41135.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 652

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K +  +   I +E+ R G +    P L   DL+  S  ++ Y + M  L
Sbjct: 259 QGLPLLMPKGAKMIQTLQRWIEDEEERRGYMRTKTPLLAKKDLYEISDHWNHYKEGMFVL 318

Query: 97  ADRNDK-AMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
            D  D+ A ++   P        +++   KSYR+LP  + +    FR+E      G+ R 
Sbjct: 319 GDEEDENAEVFALRPMTCPFQYYVYKQSQKSYRDLPCRYGETSTLFRNEDSGEMHGLTRV 378

Query: 153 REFLMKDAYSFDLTPE 168
           R+F + + +   +TPE
Sbjct: 379 RQFTISEGHLI-VTPE 393


>gi|126735278|ref|ZP_01751024.1| threonyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126715833|gb|EBA12698.1| threonyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 648

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 149/417 (35%), Gaps = 54/417 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q      E++ P +    LW  SG +D Y +
Sbjct: 260 MQEEAPGQVFWHPNGWTVYTELQDYVRRKQRAGDYREINTPQVVDRKLWEASGHWDKYHE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    + A         P +      +F   +KSYR+LP    +     R E    
Sbjct: 320 HMFVVEVEEEHAKEKAINALKPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCARYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP--- 201
             G+MR R F   D + F    E    +    F+++L  I+  LG +   +   + P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CTEEQIETECARFINFLADIYKDLGFEDFEIAFATRPEKR 437

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +G D S + +     G  +        DF +   +  F                Y    D
Sbjct: 438 VGSDESWDHV----EGALEAAIKSTGRDFRLEPGDGAF----------------YGPKLD 477

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYG 318
            +   L D+L        R  + G    F    +LP  + AT+ G DG  H    +    
Sbjct: 478 FY---LTDAL-------GRTWQCG---TFQVDPNLPERLGATYIGQDGSKHRPFMLHRAT 524

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G+      ++   H GK   W   +AP ++ +  I +      D   ++   L  VG  
Sbjct: 525 LGSFERFIGILIEEHAGKLPFW---LAPRQVVVATIVSD---ADDYAMEVVNALKAVGVR 578

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              D   E+I  +     +   P+ + +G++ V +  V  +          SL E++
Sbjct: 579 AEADLRNEKINFKVREHSVGKVPVILALGAREVEEKTVTARRLGENKTSVTSLTEIV 635


>gi|312867885|ref|ZP_07728090.1| serine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311096640|gb|EFQ54879.1| serine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 425

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYDELEKMVVNAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|12845562|dbj|BAB26799.1| unnamed protein product [Mus musculus]
          Length = 722

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 165/417 (39%), Gaps = 59/417 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 334 FHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSE 393

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       ++  +  P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 394 NMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLT 452

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD   
Sbjct: 453 RVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD--- 507

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 508 --IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKIDI 545

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G
Sbjct: 546 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAILG 594

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCD 378
           ++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D
Sbjct: 595 SVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMAD 648

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              D  G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++EE +
Sbjct: 649 TDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVEETV 704


>gi|322789351|gb|EFZ14663.1| hypothetical protein SINV_09736 [Solenopsis invicta]
          Length = 1422

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 127/348 (36%), Gaps = 72/348 (20%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E +M   +   ++S   LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 1028 PTSETIMYPAYAKWLRSDTELPLRLNQWNNVVRWEFKDPKPFLRTREFLWQEGHTAFATK 1087

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              ++    ++   Y R++    L ++P                +V     E + F   D+
Sbjct: 1088 LEAEQEVLQILDMYARVYE--NLLAVP----------------VVRGRKTEKEKFAGGDY 1129

Query: 228  MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     T  +  IS N                                 R I+    
Sbjct: 1130 --------TTTVEAFISTN--------------------------------GRAIQGATS 1149

Query: 288  FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
             + G  +S   +   +G   +  +V   S+G+   R +  +I    D +G++ P +VAP 
Sbjct: 1150 HHLGQNFSKMFNIQVEGKTNEKMFVYQNSWGL-TTRTIGVMIMIHGDDQGLVLPPNVAPI 1208

Query: 348  KISLINI---------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVAD 396
            +I +I           K H+ +    C K+  RLSK G      D  E    G +F   +
Sbjct: 1209 QIVVIPCGIAASMSESKKHELLTE--CSKLVERLSKEGKFRVKADFRENRTPGWRFNHWE 1266

Query: 397  LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            L G P+++ +G + +  ++V +  R T  R   + + V+   +    N
Sbjct: 1267 LKGVPIRIELGPRDLEKNQVTLVRRDTFQRIAGNKDNVVQLVASMLKN 1314


>gi|241894947|ref|ZP_04782243.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871665|gb|EER75416.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
          Length = 699

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 10/132 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I + + + G   +  P L + +L+ +SG +D Y  +M    
Sbjct: 305 GLAVWMPNGAAIRRTLERYIVDREVQDGYQHVYTPVLSNLNLYKQSGHWDHYRDDMFPPM 364

Query: 98  DRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  D   +       P+H  +M  +++ H +SYR+LPF   ++ +  R E      G+ R
Sbjct: 365 DMGDGEFLELRPMNCPSH--IM--VYKHHQRSYRDLPFRVAELGMMHRYEKSGALTGLSR 420

Query: 152 SREFLMKDAYSF 163
            RE  + D ++F
Sbjct: 421 VREMTLNDGHTF 432


>gi|27229277|ref|NP_149065.2| threonyl-tRNA synthetase, cytoplasmic [Mus musculus]
 gi|59896669|sp|Q9D0R2|SYTC_MOUSE RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|26373003|dbj|BAB27429.2| unnamed protein product [Mus musculus]
 gi|74177703|dbj|BAE38950.1| unnamed protein product [Mus musculus]
 gi|74195699|dbj|BAE39654.1| unnamed protein product [Mus musculus]
 gi|74223282|dbj|BAE40773.1| unnamed protein product [Mus musculus]
 gi|74225376|dbj|BAE31616.1| unnamed protein product [Mus musculus]
 gi|148671337|gb|EDL03284.1| threonyl-tRNA synthetase, isoform CRA_b [Mus musculus]
          Length = 722

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 165/417 (39%), Gaps = 59/417 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 334 FHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSE 393

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       ++  +  P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 394 NMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLT 452

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD   
Sbjct: 453 RVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD--- 507

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 508 --IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKIDI 545

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G
Sbjct: 546 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAILG 594

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCD 378
           ++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D
Sbjct: 595 SVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMAD 648

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              D  G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++EE +
Sbjct: 649 TDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVEETV 704


>gi|255943789|ref|XP_002562662.1| Pc20g01010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587397|emb|CAP85430.1| Pc20g01010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1334

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +VIE S+      + +G++ +P ++AP K+ L+ +  H    +   +++
Sbjct: 504 SFGIG--RILYSVIEHSYWYRAGDETRGVLSFPPAIAPTKVLLVPLSTHASF-KPLTQRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ++L K G     DD    IG +++  D LG P  V V  + V D+   ++ R T  +  
Sbjct: 561 TSKLRKAGVSNRVDDSSASIGKRYSRNDELGTPFGVTVDFQSVQDNTFTLRDRDTTKQVR 620

Query: 429 MSLEEVIN 436
            S +E++ 
Sbjct: 621 ASEDEILQ 628



 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   + + PEG K
Sbjct: 238 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEGGK 282


>gi|182419627|ref|ZP_02950872.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237665561|ref|ZP_04525549.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376517|gb|EDT74094.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237658508|gb|EEP56060.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 636

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 91/448 (20%), Positives = 176/448 (39%), Gaps = 54/448 (12%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L I   N  +A+   H+ +   L+     +   G   +LP G    +++    R+     
Sbjct: 229 LEIHLNNLEEAKKRDHRKLGKELKLFTFAEEGPGFPFFLPKGVILKNSLIDFWRKIHYEA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  P + +  LW  SG +  Y KE +  +  +D+     P +      +++S   S
Sbjct: 289 GYVEVETPIMLNKKLWETSGHWYHY-KENMYTSMIDDEEFALKPMNCPGGMIVYKSDSHS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+ P    ++    R EL     G+MR R F   DA+ F + PE  K     +     +
Sbjct: 348 YRDFPMRVGELGRVHRHELSGALHGLMRVRAFTQDDAHIF-MLPEQIKSEIKGVVELIDK 406

Query: 184 IFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++   G K    +  R E   +G D   E+ +  D+    +                   
Sbjct: 407 VYSIFGFKYHVELSTRPEDS-MGSD--EEWKMAEDSLRGAL------------------- 444

Query: 241 DIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
           D ++L  ++ +   A Y    D H   L DS+        R  + G I      + LP  
Sbjct: 445 DELNLQYVINEGDGAFYGPKIDFH---LEDSI-------GRTWQCGTI---QLDFQLPQR 491

Query: 298 MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G+D + H  + +     G++     ++     GK   +P  +AP ++ ++ I  
Sbjct: 492 FELEYVGSDNEKHRPIVIHRVIFGSIERFIGILIEHFAGK---FPTWLAPVQVKVLPISD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 + C+++  + ++ G  V  D   E+IG +   A     P  VI+G K   +  +
Sbjct: 549 K---FNNYCDEVVKQFNENGIRVEIDQRNEKIGYKIREARNERVPYIVIIGEKEEGEGNI 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R  G    ++++++I   ++   N
Sbjct: 606 SLRSRKNGDEGSINVKDLIERINNEIKN 633


>gi|197103889|ref|YP_002129266.1| threonyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|238690165|sp|B4RE95|SYT_PHEZH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|196477309|gb|ACG76837.1| threonyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 658

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H KG+  W          V + +R   +  G  E+  P +     W +SG +D Y
Sbjct: 262 GMVFWHEKGLTLW--------RTVESYVRRRLDEAGYQEVRTPQVLDRVFWEKSGHWDKY 313

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
              M        + +   P +      IF+   KSYR+LP    +     R E      G
Sbjct: 314 RPNMFVCETEEGEELSLKPMNCPGHVQIFKFGQKSYRDLPLRMAEFGACHRYEPSGALHG 373

Query: 149 VMRSREFLMKDAYSF 163
           +MR R F   DA+ F
Sbjct: 374 LMRVRAFTQDDAHIF 388


>gi|70950383|ref|XP_744519.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524507|emb|CAH79733.1| hypothetical protein PC000457.03.0 [Plasmodium chabaudi chabaudi]
          Length = 333

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S R I+     Y GT ++      F+       YV   S+G    R +  +I    D KG
Sbjct: 57  SGRAIQAATSHYLGTNFAKMFKIEFEDEQENKQYVHQTSWGC-TTRSIGVMIMVHSDNKG 115

Query: 338 IIWPDSVAPFKISLINI--KAHDQV-----CRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +I P +VA +K  ++ I  K  D+      C+D  EKI    +++ C +F D      G 
Sbjct: 116 LILPPNVAKYKAVIVPILYKNTDETAIFNYCKDI-EKILKN-AQINC-IFDDRDLYSPGY 172

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +F   +L G P+++ VG K + ++      R    + ++  E V+
Sbjct: 173 KFNHWELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKESVL 217


>gi|332030887|gb|EGI70523.1| Threonyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 714

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   IR E  + G  E+  P + ++ LW  SG +  Y + 
Sbjct: 329 HELSPGSCFFQPRGAYIYNTLVDFIRSEYRKRGFQEVVTPNIFNSKLWQTSGHWQHYAEN 388

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D   +     P +      IF    +S+R LP  F    +  R+EL     G++R
Sbjct: 389 MFSF-DVEKETFALKPMNCPGHCMIFDVRCRSWRELPIRFADFGVLHRNELSGALTGLIR 447

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 448 VRRFQQDDAHIF 459


>gi|298250750|ref|ZP_06974554.1| threonyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297548754|gb|EFH82621.1| threonyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 624

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G    D +   ++  Q   G   + +P +   DL+  SG ++ + +++  ++
Sbjct: 234 GLPLFTPKGTLVRDLLEEFVQSLQEPLGYQRVHIPHITKNDLYKTSGHWEKFQEDIFHVS 293

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
            ++ +     P +    T I+ S ++SYR LP    ++   +RDEL     G+ R R   
Sbjct: 294 GKSGEDFCMKPMNCPHHTQIYASRMRSYRELPIRLSEVTTVYRDELPGTLHGLSRVRAIT 353

Query: 157 MKDAYSFDLTPEGSKHSYNKMF 178
             DA+ F  TP+  +    +++
Sbjct: 354 QDDAHVF-CTPDQVQEEVLRIY 374


>gi|220927802|ref|YP_002504711.1| prolyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|259511589|sp|B8I5R4|SYP_CLOCE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219998130|gb|ACL74731.1| prolyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 478

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   + +  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFDIQYTDKNNQLQYVHQTSWGV-TTRLIGAIIMVHGDDSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P ++AP ++ +I +  H +   +   ++  +LS     V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPAIAPTQLVIIPVSQHKEGVLEKANELKQKLS-AKFRVKMDDSDKMPGWKFSEYEMK 342

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G PL++ +G K +  ++  +  R
Sbjct: 343 GVPLRIEIGPKDIEKNQAVLVRR 365


>gi|116617774|ref|YP_818145.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122272025|sp|Q03YF0|SYT_LEUMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116096621|gb|ABJ61772.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 652

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 149/393 (37%), Gaps = 48/393 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   I +++   G   +  P L + +L+  SG +D Y ++M    
Sbjct: 266 GLPVWLPNGATIRRQVERYITDKELSNGYQHVYTPVLSNLNLYKTSGHWDHYREDMFPPM 325

Query: 98  DRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           D  D   +       P+H  +M  +F    +SYR LP    ++ +  R E      G+ R
Sbjct: 326 DMGDGEFLELRPMNCPSH--IM--VFNHKPRSYRELPMRIAELGMMHRYEKSGALTGLSR 381

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE  + D ++F + PE  +  +  +    + ++    +K    R         LS+   
Sbjct: 382 VREMTLNDGHTF-VEPEKLEEEFKSILTMMMGVYRDFNIKDYRFR---------LSYR-- 429

Query: 212 VLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              D   T+ +   D M +       T  DD+       E   A Y    DV  +    +
Sbjct: 430 ---DPKNTEKYFDDDEMWEKSQKQLKTAMDDLGLDYFEAEGEAAFYGPKLDVQTKT---A 483

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAV 328
           L   + +S   ++    F    ++ L     + G DG D++  V +    +G M    A 
Sbjct: 484 LGNEETLSTIQLD----FLLPERFDL----KYIGRDGLDNHRPVMLHRGIVGTMERFTAY 535

Query: 329 IESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +   + G    W   ++P ++ +I  N+ AH        +K    L   G     +    
Sbjct: 536 LIEMYKGAFPTW---LSPLQVQIIPVNLGAHGNYANAVQQK----LQDAGLRANVETKDA 588

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           ++G     A     P  +++G   V+ + V ++
Sbjct: 589 KMGYLIREAQTNKIPYTLVLGDSEVNSNTVTVR 621


>gi|255019923|ref|ZP_05291997.1| Threonyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254970582|gb|EET28070.1| Threonyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 454

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+   R G   +  P +    LW  SG  D Y   M +  
Sbjct: 72  GLVFWHPQGAQIRKVIEDYWRQAHLRGGYELLYTPHIAHEKLWFTSGHKDFYADSMFQPM 131

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +     P +      I+++ ++SYR+LP  + ++   +R E+     G+MR R F 
Sbjct: 132 EDEGEPYQLKPMNCPFHILIYKNTLRSYRDLPIRWAELGTVYRHEMSGALHGLMRVRGFT 191

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 192 QDDAHIF 198


>gi|33152811|ref|NP_874164.1| threonyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|71153574|sp|Q7VKR9|SYT_HAEDU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33149036|gb|AAP96553.1| threonyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 643

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 146/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T E  +            I+   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIESEVTACIKMVYDIYSTFGFTNIFVKLSTRPDNRIGAD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A+ G +    S + +++ I      F                Y    +     L
Sbjct: 432 -DMWDRAEAGLSAAL-SANGLEYQIQHGEGAF----------------YGPKIEF---AL 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D L        R  + G +      ++LP  + A++   D   H   M    I G++  
Sbjct: 471 RDCL-------GREWQCGTV---QLDFALPSRLDASYVTEDNSRHTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G   +W   +AP +  ++NI        D  +++  +LS  G  V  D  
Sbjct: 521 FIGIITEEYAGFFPVW---LAPIQAVVMNITDSQA---DYVQQVVKQLSDAGLRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E++G +     L   P  ++ G K +++ KV ++ R
Sbjct: 575 NEKVGFKVREHTLRRVPYMLVCGDKEITEGKVSVRTR 611


>gi|189499158|ref|YP_001958628.1| threonyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|238692225|sp|B3EKG9|SYT_CHLPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189494599|gb|ACE03147.1| threonyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 659

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  WLP G      + A ++EEQ + G + +  P + + DL+  SG Y  Y       L
Sbjct: 275 GLPIWLPKGAIIRSELEAFLKEEQRKRGYVPVYTPHIGNIDLYKRSGHYPYYSDSQFPPL 334

Query: 97  ADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
             ++D    +  +  P +      I+ S ++SYR+LP    +    +R E      G++R
Sbjct: 335 TYKDDLGREEQYLLKPMNCPHHHLIYSSQLRSYRDLPIRMAEFGTVYRHEQSGELNGLIR 394

Query: 152 SREFLMKDAYSF 163
           +R F   D++ +
Sbjct: 395 ARGFTQDDSHIY 406


>gi|242090883|ref|XP_002441274.1| hypothetical protein SORBIDRAFT_09g023590 [Sorghum bicolor]
 gi|241946559|gb|EES19704.1| hypothetical protein SORBIDRAFT_09g023590 [Sorghum bicolor]
          Length = 508

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 11/165 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++     TF+   G    V   S+     R +  ++ +  D KG
Sbjct: 243 TGRGIQGATSHCLGQNFAKMFDITFENEKGVREMVWQNSWAY-TTRSIGVMVMTHGDDKG 301

Query: 338 IIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGEQ----IGS 390
           ++ P  VAP ++ +I +   D      + ACE     L++ G   F  D+  +     G 
Sbjct: 302 LVLPPKVAPIQVIVIPVPYKDADTTAIKGACESAVYTLNQSG---FRADLDTRENYSPGW 358

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +++  ++ G PL++ +G K +++ +V I  R  G + D+ +  ++
Sbjct: 359 KYSHWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPVTNLV 403



 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F   I+S+R+LP    Q     R E       +RSREFL ++ ++   T 
Sbjct: 131 PTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 190

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y RI+   
Sbjct: 191 EEADEEVLQILELYRRIYEEF 211


>gi|319778289|ref|YP_004129202.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317108313|gb|ADU91059.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 646

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 13/163 (7%)

Query: 7   FLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H KL     + H    + G+  W P G      V   +R+    
Sbjct: 236 YLTMLEE----AEKRDHRKLGKELDLFHFQDEAPGLIFWHPKGWTIWQQVEQFMRKVYVE 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSH 121
            G  E+  P +    LW ++G +D+Y + M      N +   YG  P +      I+ S 
Sbjct: 292 NGYQEIKAPQILDLGLWKKTGHWDNYKENMFTTQSENRE---YGLKPMNCPGHVQIYNST 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           + SYR LP  + +     R+E      G+MR R F   D + F
Sbjct: 349 LHSYRELPIRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF 391


>gi|258512352|ref|YP_003185786.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479078|gb|ACV59397.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 483

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++     Y G  ++      +   D +  YV   S+G+ + R++ A++    D +G++
Sbjct: 227 RALQTATSHYLGQNFAKSFEIQYLDKDNQLKYVYTTSWGM-STRILGAIVMVHGDDRGLV 285

Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
            P  ++P ++ ++ I   KA + V   A E ++  L +    V  DD  +   G +F   
Sbjct: 286 LPPKLSPTQVVIVPIGPAKAREAVVAKARE-LFDALKRADIRVHLDDRDDVSPGWKFNEY 344

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +L G P+++ +G + +  S+  +  R TG +  + L+ VI       S+
Sbjct: 345 ELRGVPIRLELGPRDLEASQAVLARRDTGEKITVPLDAVIERVQALLSD 393


>gi|111225872|ref|YP_716666.1| prolyl-tRNA synthetase [Frankia alni ACN14a]
 gi|123337919|sp|Q0RBM4|SYP_FRAAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|111153404|emb|CAJ65160.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Frankia alni ACN14a]
          Length = 468

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++      F GADG  H     S+G  + R+V  +I +  D  G+  P  +AP ++
Sbjct: 230 LGQNFARAFDIDFLGADGAKHLAWTTSWG-SSTRMVGGLIMAHGDDNGLRIPPRLAPTQV 288

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGS 408
            ++ ++  + V   A E I A L+  G  V  D   G   G +   A++ G P++V VG 
Sbjct: 289 VVLPVRDDETVVAKARE-IAAALTDAGLRVQVDARSGLSFGRRVTDAEIKGIPVRVEVGP 347

Query: 409 KFVSDSKVEIKHRLTGIR 426
           + ++   V +  R T ++
Sbjct: 348 RDLAAGNVTLVRRDTSVK 365


>gi|83859100|ref|ZP_00952621.1| threonyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83852547|gb|EAP90400.1| threonyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 613

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 9/189 (4%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           ++  RD      +L L T ++ +   G+  WLP G    D +  + R  ++R G   +S 
Sbjct: 196 EQAKRDHRKIGKELGLFT-LVEEVGAGLPMWLPAGNVIRDELEKLARITEHRAGYKRVST 254

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +   DL+  SG    Y ++M      +++     P +      I+     SYR+LP  
Sbjct: 255 PHITKGDLYHRSGHLPYYAEDMYAPIMIDEQEYYLRPMNCPHHHMIYAHDQWSYRDLPVR 314

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHR 187
             +    +R E      G+MR R F   DA+ +   P+ +K  +     M   Y R+F  
Sbjct: 315 LSEYGQVYRYEASGGLSGLMRVRGFCQNDAHIY-CRPDQAKDEFLAVMHMHADYYRLF-- 371

Query: 188 LGLKSIPMR 196
            G++   MR
Sbjct: 372 -GIQDFWMR 379


>gi|283851379|ref|ZP_06368661.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283573329|gb|EFC21307.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 647

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 2/125 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G+     +    R E  + G   +  P +   +LW  SG YD+Y +E +   
Sbjct: 262 GMPIWHPKGELVRTILEDFERREHLKRGYSLVRGPLILRRELWERSGHYDNY-RENMYFT 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++++    P +      I++S I+SYR+LP  ++++ +  R E      G++R R+F 
Sbjct: 321 EIDEQSYGIKPMNCLAHMLIYKSRIRSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQFT 380

Query: 157 MKDAY 161
             DA+
Sbjct: 381 QDDAH 385


>gi|281341862|gb|EFB17446.1| hypothetical protein PANDA_008118 [Ailuropoda melanoleuca]
          Length = 678

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 161/417 (38%), Gaps = 57/417 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 289 FFHELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVSPNIYNSRLWMTSGHWQHYS 348

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 349 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGL 407

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 408 TRVRRFQQDDAHIFCAIEQIEDEI--KGCLDFLRTVYNVFGFSFKLNLSTRPEKFLGD-- 463

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + +  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 464 ---IEVWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKID 500

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    TF   DG D    V +    +
Sbjct: 501 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TFVSHDGDDKKRPVIVHRAIL 549

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++  + A++  +  GK   WP  ++P ++ ++ +      C +  +K+  +       V
Sbjct: 550 GSVERMIAILTENFGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFTV 603

Query: 380 FWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D D G  +  +   A L  +   +++G K  +   V I+ R   +  + ++ E I
Sbjct: 604 DIDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTVNIRTRDNKVHGERTISETI 660


>gi|210615498|ref|ZP_03290625.1| hypothetical protein CLONEX_02841 [Clostridium nexile DSM 1787]
 gi|210150347|gb|EEA81356.1| hypothetical protein CLONEX_02841 [Clostridium nexile DSM 1787]
          Length = 657

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 158/413 (38%), Gaps = 51/413 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G   +  +   I +E+ R G +    P +   DL+V S  +  Y + M  L
Sbjct: 262 QGLPLLMPKGAAMVQTMQRWIEDEEERRGYMRTKTPLMAKKDLYVISDHWGHYKEGMFVL 321

Query: 97  ADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
            D     ++     P        +++   KSYR+LP  + +    FR+E      G+ R 
Sbjct: 322 GDEEKEGEEVFALRPMTCPFQYYVYKQSQKSYRDLPCRYGETSTLFRNEDSGEMHGLTRV 381

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F + + +   + P+  +  +             LG++             D+++  + 
Sbjct: 382 RQFTISEGH-LVIRPDQVEDEFKGCVDLAKYCLTTLGVEE------------DVTYR-LS 427

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSL 271
           LAD      +     M   +        D + +N   E   A  Y    D+  + ++   
Sbjct: 428 LADPDNMDKYLGTREMWDEVEDVMRKMLDHLEINYTEETGEAAFYGPKLDIQAKNVY--- 484

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD------HYVQMGSYGIGAMRVV 325
              K  +   I++    +   ++ +    TF   DG+       H   MG Y     R +
Sbjct: 485 --GKEDTMITIQLD--MFLAERFDM----TFVDKDGEKKRPYIIHRTAMGCYE----RTL 532

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           A +IE        ++P  + P ++ ++ I  K HD   + A E    R + V C V  D+
Sbjct: 533 AWLIEKYAG----LFPTWLCPEQVRVLPISEKYHDYANKVANE---LRGNGVKCTV--DE 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E+IG +     L   P  ++VG+K   +  V ++ R  G      L+  IN
Sbjct: 584 RAEKIGYKIRETRLDRVPYMLVVGAKEEEEGVVSVRSRYLGDEGQKPLDTFIN 636


>gi|160894708|ref|ZP_02075483.1| hypothetical protein CLOL250_02259 [Clostridium sp. L2-50]
 gi|156863642|gb|EDO57073.1| hypothetical protein CLOL250_02259 [Clostridium sp. L2-50]
          Length = 591

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  +LP G      +   I+ ++ + G   +  P + + +L+  SG +D Y   M   
Sbjct: 201 RGLPMFLPKGYIVWQELENYIKNKERKLGYRHVMTPCVGTVNLYKTSGHWDHYKDNMFPA 260

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +   ++ +  P +      I+ + + SY++LP    +I   FR E      G+ R R F
Sbjct: 261 MEVEGESFVLRPMNCPHHMMIYANKMHSYKDLPIRIGEIAHDFRFEASGTLKGIERGRHF 320

Query: 156 LMKDAYSFDLTPE 168
              DA+ F +TPE
Sbjct: 321 CQNDAHLF-VTPE 332


>gi|329849735|ref|ZP_08264581.1| threonyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328841646|gb|EGF91216.1| threonyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 640

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 1/133 (0%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +  +G+  W P G      + A +R   + +G +E+  P +     W +SG ++ Y  
Sbjct: 254 MQEEGRGMVFWHPKGWVLWRVLEAYMRRRLDASGYVEVKTPQVLDRSFWEQSGHWEKYRA 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M        + +   P +      IF+  ++SY+ LP    +     R E      G+M
Sbjct: 314 NMFVCETVEGETLSLKPMNCPGHVQIFKVGLRSYKELPIRMAEFGACHRYEPSGSLHGLM 373

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 374 RVRGFTQDDAHIF 386


>gi|254491441|ref|ZP_05104620.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224462919|gb|EEF79189.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 641

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 151/410 (36%), Gaps = 46/410 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G +    V   IR+        E+  P +    LW +SG +D +G 
Sbjct: 255 LQEEAAGMIFWHDNGWQIYRVVENYIRDVLRDNDYQEVRTPQVVDRTLWEKSGHWDKFG- 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +M+      ++     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 314 DMIFSTHSENRDYAVKPMNCPCHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGTLHGLM 373

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSHE 209
           R R F   DA+ F    E    S    F+  L  ++   G   I ++  + P     S E
Sbjct: 374 RLRGFTQDDAHIF--CTEDQIQSEVATFIELLHEVYADFGFNEIIVKLSTRPENRVGSDE 431

Query: 210 FIVLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
               A+        + D +D+ + P E   +   I  +                    L 
Sbjct: 432 VWDKAEKALEDALNAAD-LDWELQPGEGAFYGPKIEFS--------------------LK 470

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           D L       +R  + G I      +S+P  + A F   D      V +    +G++   
Sbjct: 471 DCL-------SRVWQCGTI---QVDFSMPGRLDAHFVADDNSKQVPVMLHRAILGSLERF 520

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G    W   +AP ++ ++ I        +  +K+   L K G  V  D   
Sbjct: 521 IGILIEEYAGAFPTW---LAPKQVMVMGISDKQS---EYVQKVAKDLQKQGFRVDTDLRN 574

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           E+IG +     L   P  ++VG +   D+ V ++ R       M LE+ +
Sbjct: 575 EKIGFKIREHTLRRVPYLIVVGEREAQDNAVAVRTRKGEDLGAMQLEDFV 624


>gi|317131365|ref|YP_004090679.1| prolyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469344|gb|ADU25948.1| prolyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 480

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      + G D    Y    S+G+   R++ A+I    D  G+
Sbjct: 227 GKALQSGTSHYLGDGFTHAFDIQYTGRDNTLKYPFQTSWGV-TTRLIGAIIMVHGDDSGL 285

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ +  H     +   ++  RL K    V  D      G +FA  ++ 
Sbjct: 286 VLPPRIAPTQLVIVPVAMHKPGVLEKANELLVRLQKT-LRVKLDASDNSPGWKFAEYEMK 344

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G PL++ +G + +  ++  +  R    + ++SL+E+
Sbjct: 345 GVPLRLEIGPRDIEQNRCVVVRRDDRQKIEVSLDEL 380


>gi|270261557|ref|ZP_06189830.1| threonyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270045041|gb|EFA18132.1| threonyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 642

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +   N+       ++   G + I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRAEVNECIRMVYDVYGTFGFEKIAVKLSTRPEKRIGTD 431


>gi|238879230|gb|EEQ42868.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida albicans
           WO-1]
          Length = 455

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 176/450 (39%), Gaps = 77/450 (17%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P +    L
Sbjct: 36  ISSKQLLYTTDPT---SPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPLIFKTKL 92

Query: 80  WVESGRYDSYGKEMLRLADR---------NDKAMIYG--PTHEEVMTDIFRSHIKSYRNL 128
           W +SG +D+Y  +M ++            N +   YG  P +      IF    +SY+ L
Sbjct: 93  WKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMNCPSHCMIFAKFDRSYQEL 152

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF----------DLTPEGSKHSYNKM 177
           P  +       R+E      G+ R R F   D + F            T E  K +YN  
Sbjct: 153 PVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMDQIDGEIKNTLELIKDTYNVF 212

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            ++ +  +       +  R E   IG       I   D  E+Q+   K+ ++      N 
Sbjct: 213 GINEIEFY-------LSTRPEDKFIGE------IETWDIAESQL---KNVLNSTAGEGNW 256

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    +  E   A Y    DV  +  F     NK+     I++   F    ++ L 
Sbjct: 257 ---------ATREGDGAFYGPKIDVLLKDAF-----NKKHQVGTIQLD--FQLPNRFEL- 299

Query: 298 MSATFKGADGK-DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
               + G DGK DH   +    + G++    A++   + GK   WP  + P +  ++ I 
Sbjct: 300 ---KYVGEDGKRDHQPILVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQALIVPIN 353

Query: 355 KAHDQVCRD----------ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           ++H  V  +          +C+   A L+     V  D  GE +G++   A   G+   +
Sbjct: 354 ESHVPVAEELQKKLSGDIVSCDNAIAPLTGFNFHVDIDKRGETVGARTKDAIQKGYSYLI 413

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++G K +++    ++ R     ++M+ +E+
Sbjct: 414 MIGDKDIANGTFAVRSRDDRKIKNMTSDEI 443


>gi|118580723|ref|YP_901973.1| threonyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166225474|sp|A1ARE5|SYT_PELPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118503433|gb|ABK99915.1| Ser-tRNA(Thr) hydrolase [Pelobacter propionicus DSM 2379]
          Length = 636

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R E  + G   +  P +   +LW  SG Y++Y +E +   
Sbjct: 263 GLVIWHPKGAMLRTILEDFERREHLKRGYDIVLGPQILKKELWQRSGHYENY-RENMYFT 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++++    P +      I++SH++SYR+LP  ++++    R E      G++R R F 
Sbjct: 322 EVDEQSYGIKPMNCLAHMMIYKSHLRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFT 381

Query: 157 MKDAYSFDLTPE---GSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEF 210
             DA+     PE   G      K     + IF   + + L + P ++       +L+ E 
Sbjct: 382 QDDAHIL-CAPEQLDGEIKGVLKFVSDVMAIFGFEYEMELSTRPEKSIGDDAAWELATEA 440

Query: 211 IV--LADTGET 219
           ++  L DTG +
Sbjct: 441 LLSALKDTGRS 451


>gi|154300294|ref|XP_001550563.1| hypothetical protein BC1G_11336 [Botryotinia fuckeliana B05.10]
 gi|150856659|gb|EDN31851.1| hypothetical protein BC1G_11336 [Botryotinia fuckeliana B05.10]
          Length = 787

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   WLP G +  + + + +RE+    G  E+  P + +++LW  SG +  Y  +
Sbjct: 341 HEMSPGSAMWLPHGARIYNTIMSFLREQYWTRGYEEVITPNMYNSELWKTSGHWAYYKDD 400

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R LP+      +  R+E      G+ R
Sbjct: 401 MFTFPVEKD-TFALKPMNCPGHCLMFGHRERSHRELPWRVADFGVLHRNEASGALTGLTR 459

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 460 VRRFQQDDAHIF 471


>gi|68468847|ref|XP_721482.1| hypothetical protein CaO19.2984 [Candida albicans SC5314]
 gi|68469391|ref|XP_721210.1| hypothetical protein CaO19.10501 [Candida albicans SC5314]
 gi|46443119|gb|EAL02403.1| hypothetical protein CaO19.10501 [Candida albicans SC5314]
 gi|46443402|gb|EAL02684.1| hypothetical protein CaO19.2984 [Candida albicans SC5314]
          Length = 455

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 176/450 (39%), Gaps = 77/450 (17%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P +    L
Sbjct: 36  ISSKQLLYTTDPT---SPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPLIFKTKL 92

Query: 80  WVESGRYDSYGKEMLRLADR---------NDKAMIYG--PTHEEVMTDIFRSHIKSYRNL 128
           W +SG +D+Y  +M ++            N +   YG  P +      IF    +SY+ L
Sbjct: 93  WKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMNCPSHCMIFAKFDRSYQEL 152

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF----------DLTPEGSKHSYNKM 177
           P  +       R+E      G+ R R F   D + F            T E  K +YN  
Sbjct: 153 PVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMDQIDGEIKNTLELIKDTYNVF 212

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            ++ +  +       +  R E   IG       I   D  E+Q+   K+ ++      N 
Sbjct: 213 GINEIEFY-------LSTRPEDKFIGE------IETWDIAESQL---KNVLNSTAGEGNW 256

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    +  E   A Y    DV  +  F     NK+     I++   F    ++ L 
Sbjct: 257 ---------ATREGDGAFYGPKIDVLLKDAF-----NKKHQVGTIQLD--FQLPNRFEL- 299

Query: 298 MSATFKGADGK-DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
               + G DGK DH   +    + G++    A++   + GK   WP  + P +  ++ I 
Sbjct: 300 ---KYVGEDGKRDHQPILVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQALIVPIN 353

Query: 355 KAHDQVCRD----------ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           ++H  V  +          +C+   A L+     V  D  GE +G++   A   G+   +
Sbjct: 354 ESHVPVAEELQKKLSGNIVSCDNAIAPLTGFNFHVDIDKRGETVGARTKDAIQKGYSYLI 413

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++G K +++    ++ R     ++M+ +E+
Sbjct: 414 MIGDKDIANGTFAVRSRDDRKIKNMTSDEI 443


>gi|318041217|ref|ZP_07973173.1| threonyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 570

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 150/396 (37%), Gaps = 51/396 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +  + RE     G   +  P +    LW  SG  D Y + M    
Sbjct: 189 GLVFWHPRGARMRLLIENLWRELHFAAGYELLYTPHVADISLWKTSGHLDFYSESMFGPM 248

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 249 QVDEREYQLKPMNCPFHVLTYASTLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 307

Query: 156 LMKDAYSFDLTPEGSKH-----SYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHE 209
              DA+ F L  + S       +  +  +S     H  + L + P ++    IG D   E
Sbjct: 308 TQDDAHVFCLPDQISDEILAILNLTEQILSTFDFRHYEINLSTRPEKS----IGEDAVWE 363

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              LA  G  +    K +                    I E   A Y    D+   K+ D
Sbjct: 364 ---LATQGLIEALDRKGWA-----------------YKIDEGGGAFYGPKIDL---KIED 400

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAV 328
           ++    + S   ++    F    ++ L     +  ADG      M    I G++     +
Sbjct: 401 AIGRMWQCSTIQLD----FNLPERFDL----EYVAADGSRQRPIMIHRAIFGSLERFFGI 452

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +  ++ G    W   +AP +I L+ +   D+V RD    + A L   G     D  G+++
Sbjct: 453 MTENYAGDFPFW---LAPEQIRLLPVT--DEV-RDYAAGVAAELQAAGVRASIDHSGDRL 506

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G      + +  P+  ++G+K     ++ ++ R  G
Sbjct: 507 GKLIRNGEQMKIPVLGVIGAKEAESGQISLRSRRDG 542


>gi|302788105|ref|XP_002975822.1| hypothetical protein SELMODRAFT_267898 [Selaginella moellendorffii]
 gi|300156823|gb|EFJ23451.1| hypothetical protein SELMODRAFT_267898 [Selaginella moellendorffii]
          Length = 420

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 147/406 (36%), Gaps = 54/406 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++   R G   +  P +  A+LW  SG  D Y + M    
Sbjct: 50  GLVFWHPKGALIRHLIEDYWKKVHLRRGYELLYTPHIAKAELWKRSGHLDFYKENMFEQI 109

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++     P +      I++  ++SYR LP  F ++   +R EL     G+ R     
Sbjct: 110 KIEEEFYQLRPMNCPFHIQIYKDRVRSYRELPIKFAELGTVYRYELSGALHGLFRD---- 165

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L PE  +     +      I  + G ++  +   + P               
Sbjct: 166 --DAHIFCL-PEQIRGEIKSVLDLTEEILSQFGFQNYEINLSTKP--------------- 207

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   S D       +      D      I E   A Y    D+   K+ D++    +
Sbjct: 208 --EKAVGSDDIWHKATEALKDAISDKGWTYGIDEGGGAFYGPKIDL---KIEDAIGRKWQ 262

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            S   ++      F   Y  P  A       +   + +     G++     ++  S+ G 
Sbjct: 263 CSTIQVDFNLPERFDLTYVDPSQA-------RKQPIMIHRAIFGSIERFVGILIESYAGD 315

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL------SKVGCDVFWDDMGEQIGS 390
             +W   +AP +  L+ +   +      C+++ ARL      +++ C       GE++  
Sbjct: 316 FPLW---IAPVQARLLPVTDTEL---PYCKQVLARLREKDIRAEIAC-------GERLSK 362

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               A++   PL  +VG K V    + ++ R  G    +S++EVI+
Sbjct: 363 LIRNAEVQKIPLMAVVGPKEVEAQTLTVRTRHGGELGTLSVDEVID 408


>gi|116180492|ref|XP_001220095.1| hypothetical protein CHGG_00874 [Chaetomium globosum CBS 148.51]
 gi|88185171|gb|EAQ92639.1| hypothetical protein CHGG_00874 [Chaetomium globosum CBS 148.51]
          Length = 758

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 14/146 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M   +S G    LP G +  + +   +R++  R G  E+  PT+    LW +SG  ++Y 
Sbjct: 1   MTSVYSPGSPILLPNGARIFNRLIDFLRQQYVRYGFQEVITPTIYKKALWAKSGHLENYS 60

Query: 91  KEM----------LRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            +M            + DR ++A  YG  P +      IF S  +SYR+LP  +      
Sbjct: 61  DDMYTVTSTSPSRAEVTDRGEEAE-YGLKPMNCPGHCLIFASQTRSYRDLPIRYADFSPL 119

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSF 163
            R+E+     G+ R R F   D + F
Sbjct: 120 HRNEISGALSGLTRVRRFHQDDGHIF 145


>gi|322419731|ref|YP_004198954.1| threonyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126118|gb|ADW13678.1| threonyl-tRNA synthetase [Geobacter sp. M18]
          Length = 636

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 156/404 (38%), Gaps = 43/404 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  + G   +  P +   +LW  SG Y++Y +E +   
Sbjct: 263 GLVIWHPKGAMLRTILEDFERKEHLKRGYDIVVGPQILKTELWQRSGHYENY-RENMYFT 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      I+RS ++SYR+LP  ++++    R E      G++R R F 
Sbjct: 322 TVDEQGYGVKPMNCLAHMMIYRSQLRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFT 381

Query: 157 MKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             DA+    TPE        +  FV+                     + G    EF +  
Sbjct: 382 QDDAHIL-CTPEQLDAEIKGVIQFVT--------------------EVMGIFGFEFEMEL 420

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            T   +   S D  +    +      D      I E   A Y    D+   KL D+L  +
Sbjct: 421 STRPEKSIGSDDAWELATSALLNALKDSGRPFEINEGDGAFYGPKIDI---KLRDAL--D 475

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSH 333
           +R     I+    F    ++ L    T+  ADG K   V +    +GA+     V+    
Sbjct: 476 RRWQCATIQCD--FTLPERFDL----TYVDADGEKKRPVMVHRVILGAIERFIGVLIEHF 529

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    +P  +AP + +++ +   +Q+     +  +  L   G  V  D   E++G +  
Sbjct: 530 AGN---FPTWLAPVQATIVTV-TDNQI--PYAQAAFDTLRAAGVRVQKDFRNEKLGFKIR 583

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            A L   P  ++VG K V    +  ++R     + M+ E+ + +
Sbjct: 584 EAQLQKIPYMLVVGDKEVEGGLLAPRYRDGKNLDAMTPEQFVAF 627


>gi|229583844|ref|YP_002842345.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259516679|sp|C3N1B5|SYT_SULIA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|228018893|gb|ACP54300.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|323476419|gb|ADX81657.1| threonyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 545

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 18  AEIASHKLM---LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           AE   H+L+   L     H+ +  G+  + P GQ   + + A +RE  +  G  E+    
Sbjct: 135 AEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSH 194

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFT 131
           +   D+W  SG Y  Y  +++      D+   YG  P +      I++S  ++YR+LP  
Sbjct: 195 VFKTDIWKISGHYTLYRDKLIVFNMEGDE---YGVKPMNCPAHILIYKSKPRTYRDLPIR 251

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F +    +R E +   +G++R R F+  D + F L  +  +     +    + ++H+ G 
Sbjct: 252 FSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISKTVEVWHKFGF 310

Query: 191 K 191
           K
Sbjct: 311 K 311


>gi|226293450|gb|EEH48870.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 738

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K ++ + +++R E  + 
Sbjct: 293 MQEHLKFLEEAEKRNHLRIGKEQDLFFFDEVSPGCPFLLPNGTKIINALQSLLRAEYRKR 352

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 353 GYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMFGHRERS 411

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP       +  R+E      G+ R R+F   D + F
Sbjct: 412 YRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 451


>gi|149027311|gb|EDL82978.1| threonyl-tRNA synthetase, isoform CRA_b [Rattus norvegicus]
          Length = 433

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 84/417 (20%), Positives = 162/417 (38%), Gaps = 57/417 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 44  FFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 103

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       ++  +  P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 104 ENMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 162

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 163 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 218

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + +  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 219 ---IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKID 255

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 256 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 304

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+          V
Sbjct: 305 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQEFHDAKFMV 358

Query: 380 FWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D D G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++ E +
Sbjct: 359 DIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVGETV 415


>gi|254419068|ref|ZP_05032792.1| threonyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196185245|gb|EDX80221.1| threonyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 642

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 142/418 (33%), Gaps = 59/418 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +  +G+  W P G      + A +R   +  G +E+  P +     W +SG +D Y  
Sbjct: 256 MQEEGRGMVFWHPKGWILWRVLEAYMRRRLDAAGYVEVKTPQVLDRKFWEQSGHWDKYRP 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M        + +   P +      IF    +SYR LP    +     R E      G+M
Sbjct: 316 NMFVCETVEGETLSLKPMNCPGHVQIFDQGQRSYRELPLRMAEFGACHRYEPSGSLHGLM 375

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHE 209
           R R F   DA+ F    E         F+   R  H  LG+++  +   + P     S E
Sbjct: 376 RVRGFTQDDAHIF--CREDQIVEETAEFIKLARSVHADLGMETAYISLGTRPENRAGSDE 433

Query: 210 F---------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           F               G   V    D   F  P       D I  ++I  +WT       
Sbjct: 434 FWDKAEALMAEAARAAGTEPVVTEGDGA-FYAPKL-----DFIVKDAIGREWTCGTIQLD 487

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI- 319
            V        LPE                        + AT+   DG+ H   M    I 
Sbjct: 488 YV--------LPER-----------------------LDATYIAEDGQKHRPVMLHRAIL 516

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCD 378
           G+      ++  ++ G   +W   +AP +  +  I +  D   RD    + AR    G  
Sbjct: 517 GSFERFIGIMIENYAGAFPLW---LAPTQAVVATITSDADDYARD----VMARFKAAGLR 569

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              D   E++G +     +   P+  +VG +      V I+   +  +  +++EE I 
Sbjct: 570 TEIDLRNEKVGYKVREHSVGKVPVIAVVGRQEAEQGLVAIRRLGSQAQTVVTVEEAIR 627


>gi|51102320|gb|AAT95873.1| prolyl-tRNA synthetase [Entamoeba terrapinae]
          Length = 410

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 163/425 (38%), Gaps = 75/425 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           ++++++G+I  +   G Y   P      +N+   I +   R G      P   S A L  
Sbjct: 2   QIVVQSGLIEYYDISGCYILRPAAYGIWENIQQFIDKRIKRMGVENTYFPCFVSQAALKK 61

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E VM   F++ I  +R+LP    Q   
Sbjct: 62  EEDELNGFTPEVAWVTKSGSSDLQEPIALRPTSETVMYPAFKNWITGHRDLPLKVNQWCN 121

Query: 138 KFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R E    +  +R+REFL ++ + ++   P+  K     M + Y  ++    L ++P+ 
Sbjct: 122 VVRWEFSHPYPFIRTREFLWQEGHTAYANQPDCEKECRQIMEL-YASVYE--DLLAVPV- 177

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                I G  S         GET          FP                      A Y
Sbjct: 178 -----IRGKKSK--------GET----------FP---------------------GAYY 193

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           + T +         +P N     R ++     + G  +S      F+  + K   V   S
Sbjct: 194 SLTVEC-------IIPTN----GRSVQAATSHHLGQTFSKLFGIEFEDINKKKQLVYQNS 242

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +G+ + R +   + +  D KGI+ P   A  ++ +I I  H     D  +     L+++ 
Sbjct: 243 WGL-STRSIGVTVMTHGDDKGIVIPPRAANKQVVIITIH-HKGSPNDEMDAKANELTEML 300

Query: 377 CD----VFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            D     F D  DM    G +F+  ++ G P+++ +G +  + SKV I  R  G + + S
Sbjct: 301 LDNDIRAFADTNDM-HNPGWKFSEYEMRGIPIRIELGQRDYAGSKVVIVRRDNGAKCESS 359

Query: 431 LEEVI 435
             +++
Sbjct: 360 WTDLV 364


>gi|49168658|emb|CAE02700.1| putative threonyl tRNA synthase [Yarrowia lipolytica]
          Length = 461

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 84/434 (19%), Positives = 170/434 (39%), Gaps = 68/434 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   S G   +LP GQ+    +   +R +    G  E+S P +    LW +SG ++ +  
Sbjct: 59  ISPESPGSAFFLPHGQRIYSRLGEFMRLQLRVFGFQEISSPIMYKNSLWKQSGHWEKFQD 118

Query: 92  EMLRLADRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +M R+   +++  +       P +      +F S  +SYR LP  +       R+E    
Sbjct: 119 DMFRVQPGHEETSVEEEFSLKPMNCPGHCLLFNSLKRSYRELPLRYSDFSPLHRNEASGA 178

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F   D + F  TPE  +   ++      + ++  GL              +
Sbjct: 179 LIGLTRVRRFHQDDGHIF-CTPEQVESEISRALKLVQQTYNTFGL--------------E 223

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY------AAT 259
           +S   +VL+   ET +   + + D    +E        +L S+++ W+         A  
Sbjct: 224 ISR--VVLSTRPETFIGDIEQWND----AEK-------ALTSVLDSWSVSKGKWELNAGD 270

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHI-FYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              +  K+ D L ++K           + F    ++ L     F  ++     V +    
Sbjct: 271 GAFYGPKI-DILVKDKHGKEHQTATTQLDFQLPERFQLKY---FDASETAQRPVMVHRAV 326

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-- 376
            G++    A++   ++GK   WP  ++P +  ++ +    +   +  EK+ A+LS +   
Sbjct: 327 YGSLERFLAILIDHYEGK---WPLWLSPRQCMVLPV---GEAQNEFAEKVAAQLSGLPSI 380

Query: 377 -------------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                        CDV  D   E +G +   A   G+    ++G K + + KV ++    
Sbjct: 381 TDQSTPLSASTLFCDV--DTRSETLGQKIKQARNEGYSYIAVIGDKEMQEGKVTVQKPGK 438

Query: 424 GIREDMSLEEVINY 437
             R+ ++++E  ++
Sbjct: 439 KDRQLLTVDEARDF 452


>gi|331001642|ref|ZP_08325165.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330413363|gb|EGG92730.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 651

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   LP G K +  +   I + E N  G +    P +  +DL+  SG +D Y   M  
Sbjct: 259 QGLPLMLPKGTKMIQKLQRWIEDLEDNEWGYVRTKTPLMAKSDLYKISGHWDHYQDGMFI 318

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D  +   I    P        ++++  KSYR+LP+   +    FR+E      G+ R 
Sbjct: 319 LGDPQNDGEILALRPMTCPFQYYVYKNTQKSYRDLPYRMGETSTLFRNEDSGEMHGLTRV 378

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           R+F + + ++  + P+ ++          + +   LGL+
Sbjct: 379 RQFTISEGHNV-IRPDQAEEELQNCLNLAIYVLDILGLR 416


>gi|225550529|ref|ZP_03771478.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379683|gb|EEH02045.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 580

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/404 (20%), Positives = 166/404 (41%), Gaps = 47/404 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I E + +     +  P L S DL+  SG +D Y   +   
Sbjct: 198 QGLPIWLPNGTIIKSQVQKFINEVEFQFNFDTVITPILGSIDLYKTSGHWDHYKDNIFSP 257

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ +I  P      T ++ + ++SYR+LP    +  +  R E      G  R RE 
Sbjct: 258 VQIDNEVLILRPMTCPHHTLVYSNELRSYRSLPIRLSEHSILHRYESSGGLTGFERVREM 317

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +++D + F   P+  +H     F         LG+K+  +               + L D
Sbjct: 318 ILEDCHVF-CRPDQIEHEVINAFKMIQEAQEGLGIKTFEIH--------------LSLND 362

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY---AATSDVHNEKLFDSLP 272
             + +      + D P   E++      +L  +++    PY      +  +  K+   + 
Sbjct: 363 PNDKE-----KYYDDPQMWEHSQN----ALRKMLKDHKIPYKEMVGEAAFYGPKIDFQV- 412

Query: 273 ENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAA 327
             K V  R I V  I   F    +++L    ++   + +     M   GI     R++A 
Sbjct: 413 --KTVLNRIITVSTIQLDFLLPNRFNL----SYINENNEQSTPVMIHIGIIGTYERLLAI 466

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E +   KG++ P  ++P ++ +I +  ++ +  D  +++ A+L K       D   E+
Sbjct: 467 LLEQT---KGVL-PLWLSPVQVVIIPV--NENLHADYAKELNAKLRKHLVRSSLDLRNER 520

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +  +   A +   P Q++VG + + + K+ + +R  G  E  ++
Sbjct: 521 LSKKIREAQIQKIPYQIVVGDEEIKNDKM-VTYRRYGSEETTTV 563


>gi|185179115|ref|ZP_02964840.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024051|ref|ZP_02996803.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518364|ref|ZP_03003871.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225551314|ref|ZP_03772260.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209012|gb|EDU06055.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188019085|gb|EDU57125.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188998237|gb|EDU67334.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225379129|gb|EEH01494.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 580

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/404 (20%), Positives = 166/404 (41%), Gaps = 47/404 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I E + +     +  P L S DL+  SG +D Y   +   
Sbjct: 198 QGLPIWLPNGTIIKSQVQKFINEVEFQFNFDTVITPILGSIDLYKTSGHWDHYKDNIFSP 257

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ +I  P      T ++ + ++SYR+LP    +  +  R E      G  R RE 
Sbjct: 258 VQIDNEVLILRPMTCPHHTLVYSNELRSYRSLPIRLSEHSILHRYESSGGLTGFERVREM 317

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +++D + F   P+  +H     F         LG+K+  +               + L D
Sbjct: 318 ILEDCHVF-CRPDQIEHEVINAFKMIQEAQEGLGIKTFEIH--------------LSLND 362

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY---AATSDVHNEKLFDSLP 272
             + +      + D P   E++      +L  +++    PY      +  +  K+   + 
Sbjct: 363 PNDKE-----KYYDDPQMWEHSQN----TLRKMLKDHKIPYKEMVGEAAFYGPKIDFQV- 412

Query: 273 ENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAA 327
             K V  R I V  I   F    +++L    ++   + +     M   GI     R++A 
Sbjct: 413 --KTVLNRIITVSTIQLDFLLPNRFNL----SYINENNEQSTPVMIHIGIIGTYERLLAI 466

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E +   KG++ P  ++P ++ +I +  ++ +  D  +++ A+L K       D   E+
Sbjct: 467 LLEQT---KGVL-PLWLSPVQVVIIPV--NENLHADYAKELNAKLRKHLVRSSLDLRNER 520

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +  +   A +   P Q++VG + + + K+ + +R  G  E  ++
Sbjct: 521 LSKKIREAQIQKIPYQIVVGDEEIKNDKM-VTYRRYGSEETTTV 563


>gi|284996685|ref|YP_003418452.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|284444580|gb|ADB86082.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 545

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 18  AEIASHKLM---LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           AE   H+L+   L     H+ +  G+  + P GQ   + + A +RE  +  G  E+    
Sbjct: 135 AEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSH 194

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFT 131
           +   D+W  SG Y  Y  +++      D+   YG  P +      I++S  ++YR+LP  
Sbjct: 195 VFKTDIWKISGHYTLYRDKLIVFNMEGDE---YGVKPMNCPAHILIYKSKPRTYRDLPIR 251

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F +    +R E +   +G++R R F+  D + F L  +  +     +    + ++H+ G 
Sbjct: 252 FSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISKTVEVWHKFGF 310

Query: 191 K 191
           K
Sbjct: 311 K 311


>gi|227826680|ref|YP_002828459.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|259516736|sp|C3MUC7|SYT_SULIM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227458475|gb|ACP37161.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
          Length = 545

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 18  AEIASHKLM---LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           AE   H+L+   L     H+ +  G+  + P GQ   + + A +RE  +  G  E+    
Sbjct: 135 AEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSH 194

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFT 131
           +   D+W  SG Y  Y  +++      D+   YG  P +      I++S  ++YR+LP  
Sbjct: 195 VFKTDIWKISGHYTLYRDKLIVFNMEGDE---YGVKPMNCPAHILIYKSKPRTYRDLPIR 251

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F +    +R E +   +G++R R F+  D + F L  +  +     +    + ++H+ G 
Sbjct: 252 FSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISKTVEVWHKFGF 310

Query: 191 K 191
           K
Sbjct: 311 K 311


>gi|74142262|dbj|BAE31895.1| unnamed protein product [Mus musculus]
          Length = 722

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 164/417 (39%), Gaps = 59/417 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 334 FHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSE 393

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       ++  +  P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 394 NMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLT 452

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD   
Sbjct: 453 RVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD--- 507

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 508 --IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKIDI 545

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G
Sbjct: 546 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAILG 594

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCD 378
           ++  + A++   + GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D
Sbjct: 595 SVERMIAILTEKYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMAD 648

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              D  G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++EE +
Sbjct: 649 TDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVEETV 704


>gi|213623005|ref|ZP_03375788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 523

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSD 431


>gi|295664831|ref|XP_002792967.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226278488|gb|EEH34054.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 764

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K ++ + +++R E  + 
Sbjct: 318 MQEHLKFLEEAEKRNHLRIGKEQDLFFFDEVSPGCPFLLPNGTKIINALQSLLRAEYRKR 377

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 378 GYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMFGHRERS 436

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP       +  R+E      G+ R R+F   D + F
Sbjct: 437 YRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 476


>gi|167043404|gb|ABZ08106.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_APKG1C9]
          Length = 506

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 74/148 (50%), Gaps = 2/148 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + R ++V    ++  +++   + T++  +G+  +    ++G+ + R++ A++    D  G
Sbjct: 246 NGRTLQVATYHHYRDQWARAFNLTYEDRNGETQFCHQTTFGM-SERLLGAIVGMHGDDSG 304

Query: 338 IIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +I P S+AP ++ L+ + AH D+      E +   L   G  V  D    + G++    +
Sbjct: 305 LIMPPSIAPIQVILMPVAAHSDENVIPRVEALALDLQDSGFRVQVDARDLRPGTKHYDWE 364

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + G P+++ +G + ++ S+  I  R  G
Sbjct: 365 IKGVPIRLEIGPRDLASSQCTITLRTGG 392



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 27/184 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS-------- 88
           KG+  W P G KA+  ++ + R +  RTG  E + P L   DL  +  +  S        
Sbjct: 38  KGMDVWKPYGWKAMTLIDGLTRSQMRRTGHEEYNFPLLVPEDLLDKENQLVSHLKASRDT 97

Query: 89  ---------------YGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLP 129
                          + KE+  +    D      M   PT E  M  +F   I+S+ +LP
Sbjct: 98  GIDASELRVDEEEAGFKKEVYWVKHGGDTELEVPMFLRPTSETPMYTMFSLWIRSHADLP 157

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +QI   FR E +     +R RE    +A++     +G+     +      R+ H L 
Sbjct: 158 LKTFQIVNTFRYETKQTRSFIRVREIHFFEAHTVHADQDGATAQIAEDAEIVQRLLHELC 217

Query: 190 LKSI 193
             +I
Sbjct: 218 FPAI 221


>gi|225684056|gb|EEH22340.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 738

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K ++ + +++R E  + 
Sbjct: 293 MQEHLKFLEEAEKRNHLRIGKEQDLFFFDEVSPGCPFLLPNGTKIINALQSLLRAEYRKR 352

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 353 GYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMFGHRERS 411

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP       +  R+E      G+ R R+F   D + F
Sbjct: 412 YRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 451


>gi|170744367|ref|YP_001773022.1| threonyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|168198641|gb|ACA20588.1| threonyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 670

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W P G      + A +R  + +    E++ P +    LW  SG +D Y + 
Sbjct: 257 QEEGPGVVFWHPKGWTLFQELIAYMRR-RLKADYREVNAPQILDKALWETSGHWDWYREN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      +++     P +      IF+  +KSYR+LP    +     R E      G+MR
Sbjct: 316 MFVTKTEDERVFAIKPMNCPGHVQIFKHGLKSYRDLPLRLAEFGAVSRYEPSGALHGLMR 375

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 376 VRAFTQDDAHVF 387


>gi|78357681|ref|YP_389130.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123741221|sp|Q30Y11|SYT_DESDG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78220086|gb|ABB39435.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 644

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  + G   +  P +   +LW +SG YD+Y +E +   
Sbjct: 261 GMVYWHPKGALVRAILEDFERKEHLKRGYQIVQTPQILRRELWEKSGHYDNY-RENMYFT 319

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D +++     P +      I++S   SYR+LP   +++ +  R E      G++R R+F 
Sbjct: 320 DIDEQPYGVKPMNCVAHMLIYKSRSHSYRDLPVRLFELGVVHRHEKSGVLHGLLRVRQFT 379

Query: 157 MKDAY 161
             DA+
Sbjct: 380 QDDAH 384


>gi|330829614|ref|YP_004392566.1| Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Aeromonas
           veronii B565]
 gi|328804750|gb|AEB49949.1| Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Aeromonas
           veronii B565]
          Length = 642

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/394 (20%), Positives = 138/394 (35%), Gaps = 42/394 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR +       E+  P +    LW  SG ++ Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFIRGKLKEYDYQEVKGPFMMDRVLWERSGHWEKYAQ 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T E      +        ++   G ++I ++  + P     S E 
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIMEEVSGCIRMVYDVYGTFGFENIVVKLSTRPEQRIGSDEM 433

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+    +            P E   +   I                       L D 
Sbjct: 434 WDRAEKALAEALELNGLKYDLQPGEGAFYGPKIEFT--------------------LHDC 473

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           L        R  + G +      ++LP  + AT+ G +   H   M    I G++     
Sbjct: 474 LD-------RAWQCGTV---QLDFALPGRLGATYVGENNDRHVPVMIHRAILGSIERFIG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G   ++P  +AP +  ++NI  +     D   K+   L+  G     D   E+
Sbjct: 524 ILTEEYAG---LFPTWLAPTQAVVMNITDNQA---DYAVKVAKALNDAGLRAKADLRNEK 577

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 578 IGFKIREHTLKRVPFMLVCGDKEVEAGKIAVRTR 611


>gi|299144001|ref|ZP_07037081.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518486|gb|EFI42225.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 639

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 92/441 (20%), Positives = 168/441 (38%), Gaps = 55/441 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L T  +H    G   + P G    + +    R      
Sbjct: 232 EYIERIEEAEKRDHRKLGRELDLFT--MHDEGPGFPFFHPNGMILRNELLGWWRNVLIEN 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           G  E+  P + +  LW  SG +D Y + M     D  D A+   P +    T ++ ++  
Sbjct: 290 GYGEIQTPIILNEALWHRSGHWDHYKENMYFTKIDGEDYAV--KPMNCPGSTIVYSTNPH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +     R EL     G+ R R F   DA+ + L P   +    KM     
Sbjct: 348 SYRELPIRLSEFGQVHRHELSGALHGLFRVRTFTQDDAHVYCL-PSQIEEEVFKMIDLAD 406

Query: 183 RIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++   G K S+ +        GD+        +T       +++ +   +  +N  +  
Sbjct: 407 YLYSTFGFKYSVELSTRPEDFMGDI--------ETWNK----AEESLKVALEKKNIKY-- 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLPM 298
                SI E   A Y    D H E                  +G  +  GT    + +P+
Sbjct: 453 -----SINEGDGAFYGPKIDFHLEDA----------------IGRTWQCGTIQLDFQMPV 491

Query: 299 S--ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           +   T+    G K   V +    +G++     ++     GK  +W   ++P ++ +I + 
Sbjct: 492 NFDLTYINEKGEKARPVMLHRALLGSVERFMGILIEHFAGKFPLW---LSPIQVEIIPV- 547

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +  +++  +L   G  V+ D+  E++G +   A L      ++VG + V+  K
Sbjct: 548 --SEKFAEFAKELEIKLKNTGLKVYLDERAEKVGYKIREAQLKKINYMLVVGEQEVNSGK 605

Query: 416 VEIKHRLTGIREDMSLEEVIN 436
           + ++ R     +D  +EE IN
Sbjct: 606 LSVRKRNGEEIKDCEVEEFIN 626


>gi|15899227|ref|NP_343832.1| threonyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|229578099|ref|YP_002836497.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|229583311|ref|YP_002841710.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|22654132|sp|Q97VW8|SYT_SULSO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516740|sp|C3NMY1|SYT_SULIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516744|sp|C3N9B3|SYT_SULIY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13815789|gb|AAK42622.1| Threonyl-tRNA synthetase (thrS) [Sulfolobus solfataricus P2]
 gi|228008813|gb|ACP44575.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|228014027|gb|ACP49788.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
          Length = 545

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 18  AEIASHKLM---LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           AE   H+L+   L     H+ +  G+  + P GQ   + + A +RE  +  G  E+    
Sbjct: 135 AEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSH 194

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFT 131
           +   D+W  SG Y  Y  +++      D+   YG  P +      I++S  ++YR+LP  
Sbjct: 195 VFKTDIWKISGHYTLYRDKLIVFNMEGDE---YGVKPMNCPAHILIYKSKPRTYRDLPIR 251

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F +    +R E +   +G++R R F+  D + F L  +  +     +    + ++H+ G 
Sbjct: 252 FSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISKTVEVWHKFGF 310

Query: 191 K 191
           K
Sbjct: 311 K 311


>gi|284054770|ref|ZP_06384980.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 525

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 2/132 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+   + G   +  P + +  LW  SG YD Y + M    
Sbjct: 244 GLVFWHPKGSRMRLLIEDYWRQAHLQGGYELLYTPHIANLALWKTSGHYDFYRENMFDQI 303

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  +++    P +       ++SH+ SYR LP  + ++   +R E      G+MR R F 
Sbjct: 304 EIENQSYQLKPMNCPFHVLTYQSHLHSYRELPIRWAELGTVYRYERSGVLHGLMRVRGFT 363

Query: 157 MKDAYSFDLTPE 168
             DA+ F L PE
Sbjct: 364 QDDAHIFCL-PE 374


>gi|227829326|ref|YP_002831105.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|259516733|sp|C3MKT5|SYT_SULIL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227455773|gb|ACP34460.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
          Length = 545

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 18  AEIASHKLM---LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           AE   H+L+   L     H+ +  G+  + P GQ   + + A +RE  +  G  E+    
Sbjct: 135 AEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSH 194

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFT 131
           +   D+W  SG Y  Y  +++      D+   YG  P +      I++S  ++YR+LP  
Sbjct: 195 VFKTDIWKISGHYTLYRDKLIVFNMEGDE---YGVKPMNCPAHILIYKSKPRTYRDLPIR 251

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F +    +R E +   +G++R R F+  D + F L  +  +     +    + ++H+ G 
Sbjct: 252 FSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISKTVEVWHKFGF 310

Query: 191 K 191
           K
Sbjct: 311 K 311


>gi|171920625|ref|ZP_02695822.2| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188524282|ref|ZP_03004325.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867906|ref|ZP_03079904.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273446|ref|ZP_03205982.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554092|ref|YP_002284982.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|238065120|sp|B5ZC42|SYT_UREU1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171903344|gb|EDT49633.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|195660016|gb|EDX53396.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660383|gb|EDX53642.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198249966|gb|EDY74746.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541593|gb|ACI59822.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 580

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/404 (20%), Positives = 166/404 (41%), Gaps = 47/404 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G      V   I E + +     +  P L S DL+  SG +D Y   +   
Sbjct: 198 QGLPIWLPNGTIIKSQVQKFINEVEFQFNFDTVITPILGSIDLYKTSGHWDHYKDNIFSP 257

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ +I  P      T ++ + ++SYR+LP    +  +  R E      G  R RE 
Sbjct: 258 VQIDNEVLILRPMTCPHHTLVYSNELRSYRSLPIRLSEHSILHRYESSGGLTGFERVREM 317

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +++D + F   P+  +H     F         LG+K+  +               + L D
Sbjct: 318 ILEDCHVF-CRPDQIEHEVINAFKMIQEAQEGLGIKTFEIH--------------LSLND 362

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY---AATSDVHNEKLFDSLP 272
             + +      + D P   E++      +L  +++    PY      +  +  K+   + 
Sbjct: 363 PNDKE-----KYYDDPQMWEHSQN----ALRKMLKDHKIPYKEMVGEAAFYGPKIDFQV- 412

Query: 273 ENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAA 327
             K V  R I V  I   F    +++L    ++   + +     M   GI     R++A 
Sbjct: 413 --KTVLNRIITVSTIQLDFLLPNRFNL----SYINENNEQSTPVMIHIGIIGTYERLLAI 466

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E +   KG++ P  ++P ++ +I +  ++ +  D  +++ A+L K       D   E+
Sbjct: 467 LLEQT---KGVL-PLWLSPVQVVIIPV--NENLHADYAKELNAKLRKHLVRSSLDLRNER 520

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +  +   A +   P Q++VG + + + K+ + +R  G  E  ++
Sbjct: 521 LSKKIREAQIQKIPYQIVVGDEEIKNDKM-VTYRRYGSEETTTV 563


>gi|113954220|ref|YP_731070.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031674|sp|Q0I902|SYT_SYNS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113881571|gb|ABI46529.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 617

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 152/407 (37%), Gaps = 45/407 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEDFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYAESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
           + +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 EVDERQYQLKPMNCPFHVLTYASKLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       ++     RI       +  +   + P   IG D   E   
Sbjct: 348 TQDDAHVFCL-PEQISDEILRILNLTERILSTFDFSNYEINLSTKPDKAIGDDAVWE--- 403

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +    K +                    I E   A Y    D+   K+ D++ 
Sbjct: 404 LATKGLIEALKRKGWA-----------------YKIDEGGGAFYGPKIDL---KIEDAIG 443

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++    F    ++ L     +  ADG      M    I G++     ++  
Sbjct: 444 RMWQCSTIQLD----FNLPERFEL----DYIAADGSKQRPIMIHRAIFGSLERFFGIMTE 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP +I L+ +   D+V   A E+   +L   G     D  G+++G  
Sbjct: 496 NYAGDFPFW---LAPEQIRLLPVT--DEVLGYA-EEFQNQLKAAGIRASIDRSGDRLGKL 549

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             + + +  P+  ++G+K        ++ R  G    ++ E +I  A
Sbjct: 550 IRIGEKMKIPVLAVIGAKEAEQGAASLRSRRDGDLGVITKERLIATA 596


>gi|147899539|ref|NP_001087812.1| threonyl-tRNA synthetase [Xenopus laevis]
 gi|51895835|gb|AAH81263.1| MGC86352 protein [Xenopus laevis]
          Length = 721

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/416 (19%), Positives = 163/416 (39%), Gaps = 57/416 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR+E  + G  E+  P + ++ LW  SG +  Y +
Sbjct: 333 FHELSPGSCFFLPKGAYIYNQLIGFIRQEYRKRGFQEVVTPNVYNSKLWQTSGHWQHYSE 392

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 393 NMFSF-EVEKEIFALKPMNCPGHCLMFDHRPRSWRELPMRMADFGVLHRNELSGALTGLT 451

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLK-SIPMRAESGPIGGDLSH 208
           R R F   DA+ F    +  +    K  + +LR +++  G    + +        GD   
Sbjct: 452 RVRRFQQDDAHIFCAMEQIEEEI--KSCLDFLRSVYNVFGFTFKLNLSTRPEKFLGD--- 506

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 507 --IEVWNQAEKQL-------------EN-------SLNEFGEKWVLNPGDGAFYGPKIDI 544

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G
Sbjct: 545 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIIHRAILG 593

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++  + A++  +  GK   WP  ++P ++ ++ +      C +  +++  +  + G    
Sbjct: 594 SVERMIAILTENFGGK---WPLWLSPQQVMVVPVGP---TCDEYAQQVREQFHRAGLMTD 647

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D D G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++ E I
Sbjct: 648 VDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASETVNIRTRDNKVHGERTVTETI 703


>gi|323473769|gb|ADX84375.1| threonyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 545

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 18  AEIASHKLM---LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           AE   H+L+   L     H+ +  G+  + P GQ   + + A +RE  +  G  E+    
Sbjct: 135 AEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSH 194

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFT 131
           +   D+W  SG Y  Y  +++      D+   YG  P +      I++S  ++YR+LP  
Sbjct: 195 VFKTDIWKISGHYTLYRDKLIVFNMEGDE---YGVKPMNCPAHILIYKSKPRTYRDLPIR 251

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F +    +R E +   +G++R R F+  D + F L  +  +     +    + ++H+ G 
Sbjct: 252 FSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISKTVEVWHKFGF 310

Query: 191 K 191
           K
Sbjct: 311 K 311


>gi|315930217|gb|EFV09332.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305]
          Length = 602

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 92/448 (20%), Positives = 176/448 (39%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV +
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDN 372

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +++F                   D S+E  +   T   +     +  +    +     D
Sbjct: 373 LMKLF-------------------DFSYEMEI--STKPEKAIGDDEIWEIATKALKEALD 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+   K+ D+L        R  + G I      ++LP   
Sbjct: 412 EQGLKYGIDEGGGAFYGPKIDI---KITDAL-------KRKWQCGTI---QVDFNLPSRF 458

Query: 301 TFKGADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
             +  D    K   V +    +G+      ++     G+   +P  +AP  + ++ I +A
Sbjct: 459 KLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPTAVGIVPIGEA 515

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H     D  ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V
Sbjct: 516 H----IDYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSV 571

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R    ++++SL+E I     + S 
Sbjct: 572 ALRDRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|302537186|ref|ZP_07289528.1| prolyl-tRNA synthetase [Streptomyces sp. C]
 gi|302446081|gb|EFL17897.1| prolyl-tRNA synthetase [Streptomyces sp. C]
          Length = 470

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 80/449 (17%), Positives = 172/449 (38%), Gaps = 85/449 (18%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P  ++ PR        AE+A +  +  T +I  +  G++      ++    +
Sbjct: 1   MAKAPVLTPQAEDFPRWYQDLINKAELADNGPVRGTMVIRPYGYGLW------ERMQQEM 54

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPT 109
           +A I+E   +     + +P    + L  E+   + +  E+  +     K +    +  PT
Sbjct: 55  DARIKEAGAQNAYFPLFIP---QSYLTKEAEHVEGFAPELAVVTHGGGKELEEPVVVRPT 111

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
            E ++ D F   ++SYR+LP    Q     R E       MR R FL    +   L  EG
Sbjct: 112 SETIINDYFSKWVQSYRDLPLLINQWANVVRWE-------MRPRVFLRTSEF---LWQEG 161

Query: 170 -SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            + H+  +    Y    HR                 D+  +F+                 
Sbjct: 162 HTAHATYEDARDYAARIHR-----------------DVYGDFMT---------------- 188

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                       +++ ++ ++ + TA       ++   L     E      + +++G   
Sbjct: 189 ------------NVLGIDVVLGRKTAKERFAGAINTLTL-----EGMMGDGKALQMGTSH 231

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GT ++   +  +   +G+   V   S+G+ + R+V  +I S  D  G+  P  +A  +
Sbjct: 232 ELGTNFAKAFNTQYLSKEGQQELVWQTSWGV-STRMVGGLIMSHGDDNGLRVPPRLANVQ 290

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVG 407
           + ++ IK  + V +    ++  RL   G  V  DD +    G +    +L G P+++ +G
Sbjct: 291 VVVMAIKGDEAVAK--VRELGDRLKAAGIRVHVDDRVDTPFGRRAVDWELKGVPVRIEIG 348

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            + +      +  R+ G +  + ++ +++
Sbjct: 349 PRDLEAGTAMLARRIPGGKTPVQIDALVD 377


>gi|83954081|ref|ZP_00962801.1| threonyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83841118|gb|EAP80288.1| threonyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 649

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/399 (19%), Positives = 137/399 (34%), Gaps = 50/399 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W   G      +   +R +Q   G +E++ P +    LW  SG ++ Y  
Sbjct: 260 MQEEAPGQVFWHANGWLIYTQLQDYMRRKQRAGGYVEVNTPQVVDRKLWEASGHWEKYQD 319

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      IF   +KSYR+LP    +     R E    
Sbjct: 320 HMFIVEVDEEHAREKSVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPSGA 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGG 204
             G+MR R F   D + F    E    +    F+ +L  I+  LG ++  ++    P   
Sbjct: 380 LHGIMRVRGFTQDDGHIF--CAEDQIEAETAKFIEFLSGIYKDLGFENFSVKFSDRPEKR 437

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAATSD 261
             S E    A+                 P E   +    + +  ++I   W         
Sbjct: 438 SGSDEVWDKAEAALLSATRKAGIEPTLNPGEGAFYGPKLEFVLTDAIGRDWQCGTHQVDF 497

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG 320
           V        LPE                        + AT+ G+DG  H  V +    +G
Sbjct: 498 V--------LPER-----------------------LDATYIGSDGAKHRPVMLHRATLG 526

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +      ++   H GK   W   +AP ++ + +I +      D   ++ A L   G    
Sbjct: 527 SFERFIGILIEEHAGKLPFW---LAPRQVVVASITSE---ADDYVHEVVATLKAQGVRAE 580

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D   E+I  +     +   P+ + VG++ V +  V ++
Sbjct: 581 ADIRNEKINYKVREHSVGKVPVILAVGAREVEEKTVSVR 619


>gi|50543472|ref|XP_499902.1| YALI0A09427p [Yarrowia lipolytica]
 gi|49645767|emb|CAG83829.1| YALI0A09427p [Yarrowia lipolytica]
          Length = 461

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 84/434 (19%), Positives = 170/434 (39%), Gaps = 68/434 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   S G   +LP GQ+    +   +R +    G  E+S P +    LW +SG ++ +  
Sbjct: 59  ISPESPGSAFFLPHGQRIYSRLGEFMRLQLRVFGFQEISSPIMYKNSLWKQSGHWEKFQD 118

Query: 92  EMLRLADRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +M R+   +++  +       P +      +F S  +SYR LP  +       R+E    
Sbjct: 119 DMFRVQPGHEETSVEEEFSLKPMNCPGHCLLFNSLKRSYRELPLRYSDFSPLHRNEASGA 178

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F   D + F  TPE  +   ++      + ++  GL              +
Sbjct: 179 LSGLTRVRRFHQDDGHIF-CTPEQVESEISRALKLVQQTYNTFGL--------------E 223

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY------AAT 259
           +S   +VL+   ET +   + + D    +E        +L S+++ W+         A  
Sbjct: 224 ISR--VVLSTRPETFIGDIEQWND----AEK-------ALTSVLDSWSVSKGKWELNAGD 270

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHI-FYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              +  K+ D L ++K           + F    ++ L     F  ++     V +    
Sbjct: 271 GAFYGPKI-DILVKDKHGKEHQTATTQLDFQLPERFQLKY---FDASETAQRPVMVHRAV 326

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-- 376
            G++    A++   ++GK   WP  ++P +  ++ +    +   +  EK+ A+LS +   
Sbjct: 327 YGSLERFLAILIDHYEGK---WPLWLSPRQCMVLPV---GEAQNEFAEKVAAQLSGLPSI 380

Query: 377 -------------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                        CDV  D   E +G +   A   G+    ++G K + + KV ++    
Sbjct: 381 TDQSTPLSASTLFCDV--DTRSETLGQKIKQARNEGYSYIAVIGDKEMQEGKVTVQKPGK 438

Query: 424 GIREDMSLEEVINY 437
             R+ ++++E  ++
Sbjct: 439 KDRQLLTVDEARDF 452


>gi|14601997|ref|NP_148542.1| prolyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|74581728|sp|Q9Y9G0|SYP_AERPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|5106029|dbj|BAA81340.1| prolyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 485

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G + + G  ++       +  D +  +    SYG+ + RVVA++I    D +G+
Sbjct: 224 GRALQIGTVHHLGQSFTRAFDFRIQMRDERLDHPWQTSYGV-SDRVVASLIAVHGDDRGL 282

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDAC----EKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
           + P SVAP ++ +I I   D+  R        K    L K G  V  DD   E+ G++F 
Sbjct: 283 VIPPSVAPIQVVVIPITPGDEEKRGKVLTYTAKAAEALEKAGLRVHVDDREWERPGAKFY 342

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +  G P++V +G +      + I  R T  + ++ L E  N
Sbjct: 343 YWEAKGVPIRVEIGLREAEQDTLTIARRDTLEKTEVPLGEAGN 385



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 28/169 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL----------------W 80
           KG+  W+P G +    V  ++R   + TG  E+  P L    L                W
Sbjct: 36  KGMGVWMPYGFQIRRRVLEVVRGLLDSTGHEEVLFPLLIPEHLLRRESEHIRGFEGEVYW 95

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V  G     G+E L      D  +   PT E  +T +    IKSYR LP  +YQ+   FR
Sbjct: 96  VTHG-----GREEL------DVKLALRPTSETSITYMETFWIKSYRQLPKKYYQVVSIFR 144

Query: 141 DELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
            E +    ++R RE    K+A++   + E ++    +    Y  IF RL
Sbjct: 145 YETKATRPMIRLREVTTFKEAHTVHESFEDAERQVLEAIEVYKAIFDRL 193


>gi|296877087|ref|ZP_06901128.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296431948|gb|EFH17754.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 446

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 175 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVIPPYMV 220

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 221 NHDSMFGTGQYPKFKEDTFELSDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 277

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 278 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPEESYDELEKMVVNAENILQKLNL- 335

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 336 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 366


>gi|289620774|emb|CBI52508.1| unnamed protein product [Sordaria macrospora]
          Length = 792

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 17/165 (10%)

Query: 15  PRDAEIASHKLMLRTGMIHQH---------------SKGIYSWLPLGQKALDNVNAIIRE 59
           P   ++A+HK  L       H               S G   WLP G +  + +   I+E
Sbjct: 302 PDKKQMAAHKKFLEEAAKRDHRLIGKQQELFYFEECSPGSAMWLPHGMRINNAIMEYIKE 361

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  E+  P + +  LW +SG    Y  +M  L D + +     P +      +FR
Sbjct: 362 EYWKRGYDEVMTPNMFNTSLWEQSGHLAHYKDDMFIL-DVDKEQFGLKPMNCPAHAMMFR 420

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              +S++ LP       +  R+E      G+ R R F   DA+ F
Sbjct: 421 HRDRSHKELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF 465


>gi|194384006|dbj|BAG59361.1| unnamed protein product [Homo sapiens]
          Length = 602

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 213 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 272

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 273 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 331

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 332 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 387

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 388 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 424

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 425 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 473

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 474 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 527

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 528 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 584


>gi|70607029|ref|YP_255899.1| threonyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|68567677|gb|AAY80606.1| threonine-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
          Length = 552

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P GQ     +   + E  +  G  E+    +  + LW  SG YD Y  +ML   
Sbjct: 165 GVVLFHPNGQIIRKEMMRFMEEINDSMGYKEVYTSHVYRSLLWKISGHYDYYKDKMLLFE 224

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFL 156
             ND+ +   P +      I++S ++SY++LP  F +    +R E +   +G++R R F 
Sbjct: 225 IDNDEELGIKPMNCPAHILIYKSKVRSYKDLPIRFSEFGHVYRWEKKGELYGLLRVRGFT 284

Query: 157 MKDAYSF 163
             D + F
Sbjct: 285 QDDGHIF 291


>gi|76363445|sp|Q4J9C4|SYT_SULAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 549

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P GQ     +   + E  +  G  E+    +  + LW  SG YD Y  +ML   
Sbjct: 162 GVVLFHPNGQIIRKEMMRFMEEINDSMGYKEVYTSHVYRSLLWKISGHYDYYKDKMLLFE 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFL 156
             ND+ +   P +      I++S ++SY++LP  F +    +R E +   +G++R R F 
Sbjct: 222 IDNDEELGIKPMNCPAHILIYKSKVRSYKDLPIRFSEFGHVYRWEKKGELYGLLRVRGFT 281

Query: 157 MKDAYSF 163
             D + F
Sbjct: 282 QDDGHIF 288


>gi|313885480|ref|ZP_07819230.1| proline--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619210|gb|EFR30649.1| proline--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 479

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GTK++      +  ++ +  +    S+G+ + R++ ++I    D +G+
Sbjct: 215 GKAVQAGTSHYLGTKFAEAFDIKYLNSNNEHVHAFTTSWGV-STRLIGSLIMVHSDDQGL 273

Query: 339 IWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           + P  +AP ++  I +    +     +   +    L   G     DD   + G +F   +
Sbjct: 274 VLPPKIAPQQVVFIPVGPWQKNPAIMEQINEWNQALQAKGVRTIIDDSDNRPGFKFNEWE 333

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           L G PL++ VG + + + +  +K R    +E ++ ++V++
Sbjct: 334 LRGAPLRIEVGPRDLENKQAILKARDLSEKETVAADQVVD 373


>gi|291277001|ref|YP_003516773.1| threonyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964195|emb|CBG40041.1| threonyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 603

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRL 96
           G+  WLP G +    +  ++ +         +  P L  + +W  SG +D+YG+ M    
Sbjct: 229 GLPIWLPNGARLRRRIEELLTKALMIRDYEPVRGPELLKSSVWKTSGHFDNYGENMYFTT 288

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            D  +  +   P +      +++S ++SYR LP  FY+  +  R E      G++R REF
Sbjct: 289 IDEVEYGL--KPMNCVGHIKVYQSSVRSYRELPLRFYEYGIVHRHEKSGVLHGLLRVREF 346

Query: 156 LMKDAYSF 163
              DA+ F
Sbjct: 347 TQDDAHIF 354


>gi|269791928|ref|YP_003316832.1| prolyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099563|gb|ACZ18550.1| prolyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 478

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 15/177 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F+  DG+  Y    S+G+ + R++ A+I +  D  G+I
Sbjct: 220 KALQAGTSHFLGQNFAKAFDIRFQDRDGEVKYAWTTSWGV-STRLIGAIIMTHSDDDGLI 278

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLS-----KVGCDVFWDDMGEQI--GSQF 392
            P  VAP K++L+ I     +   + E     L      ++G      D    +    +F
Sbjct: 279 LPPRVAPVKVALLPISTDQDLISSSLEPKAMELKAAIEDRIGPRTVALDRQYHLRPSDRF 338

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-------EVINYASHRF 442
                 G PL++ +G K + +  V +  R  G R D+ +E       EV+N    R 
Sbjct: 339 FSHLQKGVPLRIELGQKELENRTVRLVCRDNGERIDVPMEGAPERVAEVLNQIQARL 395



 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D  ++ ++  PT E V+  ++   ++S+R+LP    Q     R E RPR   +R+ EFL
Sbjct: 97  GDELEEPLVVRPTSETVIGHMYSKWVQSWRDLPILINQWCNVMRWEKRPRL-FLRTSEFL 155

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            ++ ++   T E +     +M   Y  I 
Sbjct: 156 WQEGHTAHATREEAMEETLRMLGVYETIM 184


>gi|284173635|ref|ZP_06387604.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|261600981|gb|ACX90584.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 545

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 18  AEIASHKLM---LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           AE   H+L+   L     H+ +  G+  + P GQ   + +   +RE  +  G  E+    
Sbjct: 135 AEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTLRNELITFMREINDSMGYQEVYTSH 194

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFT 131
           +   D+W  SG Y  Y  +++      D+   YG  P +      I++S  ++YR+LP  
Sbjct: 195 VLKTDIWKISGHYTLYRDKLIVFNMEGDE---YGVKPMNCPAHILIYKSKPRTYRDLPIR 251

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F +    +R E +   +G++R R F+  D + F L  +  K     +    + ++H+ G 
Sbjct: 252 FSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LKEDQLKEEIKMLISKTVEVWHKFGF 310

Query: 191 K 191
           K
Sbjct: 311 K 311


>gi|320539025|ref|ZP_08038700.1| threonyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030958|gb|EFW12962.1| threonyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 642

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTVFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +   N        ++   G   I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRAEVNACIRMVYDVYATFGFDKIAVKLSTRPEKRIGTD 431


>gi|330861018|emb|CBX71290.1| threonyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 457

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +   N        ++   G + I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSD 431


>gi|148887019|sp|Q0SAY4|SYP2_RHOSR RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
          Length = 479

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 3/146 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y G K++      F    G++      S+G+ + R++  ++ +  D KG+
Sbjct: 222 GRALQSGTSHYMGIKFASAFDIRFTSETGREELCHTTSWGM-STRMIGGIVMTHGDDKGL 280

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           ++P  +AP ++ ++ I +  +     A +++  RL  VG     D       G ++   +
Sbjct: 281 VFPPRLAPHQVVIVPITRGGNVAVEGAADELAHRLRSVGVRTHVDARPHLTPGFKYNEWE 340

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + G P+++ +G + + D  V +  RL
Sbjct: 341 MRGVPVRLELGPRDLEDGTVMMVKRL 366



 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ ++    I S+R+LP    Q     R ELRPR   +R+ EFL ++ 
Sbjct: 104 EEPLVVRPTSETIIGEMMAKWISSHRDLPLLLNQWANVVRWELRPRM-FLRTTEFLWQEG 162

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LKSIPM 195
           ++  +     + S  +  +  L I+H +   L +IP+
Sbjct: 163 HTAHV----DEASARRETMLALDIYHEVARELAAIPV 195


>gi|218288925|ref|ZP_03493176.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241014|gb|EED08191.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 648

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 84/404 (20%), Positives = 167/404 (41%), Gaps = 37/404 (9%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  WLP G K    +   I + +   G   +  P L + +L+  SG ++ Y  +M  
Sbjct: 262 GQGLPLWLPNGAKIRRIIERYIVDLEESLGYQHVYTPHLANVELYKISGHWEHYKDDMYP 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +++ ++  P +      +++  + SYR LP    ++    R E+     G+ R R 
Sbjct: 322 PMKIDNEELVLRPMNCPHHMMVYKHRLHSYRELPIRIAELGTMHRYEMSGALAGLQRVRA 381

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             + DA+ F   P+  +  +  +     R++   G+     R         LS+      
Sbjct: 382 MTLNDAHIF-CRPDQIEQEFTGVVRLIQRVYKDFGIDDYYHR---------LSYR----- 426

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-VEQWTAPYAATSDVHNEKLFDSLPE 273
           D   T+ +   D M     S        + L  +  E   A Y    DV   ++  +L +
Sbjct: 427 DPKNTEKYVQNDEMWELAQSTLRKVMLDLGLEFVEAEGEAAFYGPKLDV---QVRTALGK 483

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAM-RVVAAVIES 331
           ++ +S   ++    F+   +++L     + G DG+ H   +   G +G M R VA +IE 
Sbjct: 484 DETLSTIQLD----FHLPNRFNL----EYVGEDGERHRPVVIHRGVVGTMERFVAFLIEQ 535

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
               KG  +P  +AP ++ + ++   D+    A E++ A+L ++G     D    +IG +
Sbjct: 536 Y---KG-AFPTWLAPTQVVVASVA--DEFAGYA-EEVAAKLRELGIRAEADVSDNKIGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              A     P  ++VG++   +  V ++    G    M L++ +
Sbjct: 589 IRQAQTHKIPYTLVVGAREREEGTVSVRKYHAGDLGVMPLDQFV 632


>gi|220903768|ref|YP_002479080.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254783519|sp|B8J4E4|SYT_DESDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219868067|gb|ACL48402.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 647

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 153/392 (39%), Gaps = 47/392 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  WLP G      +    R+E  + G   +  P L   + W +SG YD Y +E + 
Sbjct: 262 APGMVFWLPKGMLVRTILEDFWRKEHLKRGYDIVQGPQLLRVETWQKSGHYDHY-RENMY 320

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                + A    P +      I+ + + SYR+LP  ++++ +  R E      G++R R+
Sbjct: 321 FTQIEEDAYGVKPMNCISHMLIYGNELHSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQ 380

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFI 211
           F   DA+     PE  +    ++      + +  G +   ++  R ES  IG D + E  
Sbjct: 381 FTQDDAHII-CAPEQLEGEILEVIHLIRDLMNLFGFEYKVAVSTRPESS-IGTDEAWE-- 436

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +A +   Q    K  + + I   +  F                Y    DV   +L D +
Sbjct: 437 -MATSALVQA-VEKAGLPYTINEGDGAF----------------YGPKIDV---RLLDCI 475

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIE 330
               + S   ++    F    ++ L    T+ G DG+ H   M    I G++     ++ 
Sbjct: 476 GREWQCSTIQVD----FTLPERFDL----TYVGQDGERHRPVMVHRAIMGSLERFIGILV 527

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  G    W   +AP +  L+ + +A D+      E+  A    +G     D   E++G
Sbjct: 528 ENFAGALPTW---LAPEQARLLTVTEAGDEAVSSMLEEFKA----LGIRAQADTRNEKLG 580

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   A L   P  ++VG K V      ++ R
Sbjct: 581 FKVREAQLAKVPYILVVGEKEVQAGGANVRLR 612


>gi|126321714|ref|XP_001373481.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 723

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 160/415 (38%), Gaps = 57/415 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   ++P G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y + 
Sbjct: 336 HELSPGSCFFMPKGAYIYNTLVEFIRNEYRKRGFQEVVTPNIYNSKLWLTSGHWQHYSEN 395

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 396 MFSF-EVEKEIFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTR 454

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHE 209
            R F   DA+ F    +  +   N   + +LR  + +   S  +   + P    GD+   
Sbjct: 455 VRRFQQDDAHIFCTMEQIEEEIKN--CLDFLRTVYNVFGFSFKLNLSTRPEKFLGDVE-- 510

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVH 263
              + +  E Q+                      SLN   E+W       A Y    D+ 
Sbjct: 511 ---IWNQAEKQLES--------------------SLNEFGEKWELNPGDGAFYGPKIDI- 546

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGA 321
             ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G+
Sbjct: 547 --QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIIHRAILGS 596

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +          
Sbjct: 597 VERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVQQQFHNANLMTDS 650

Query: 382 D-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D D G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++ E I
Sbjct: 651 DLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRTRDNKVHGERTVSETI 705


>gi|160881955|ref|YP_001560923.1| prolyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|259511590|sp|A9KL35|SYP_CLOPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160430621|gb|ABX44184.1| prolyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 477

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++   +  +   + K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGDGFAKAFNIQYTDKENKLQYVHQTSWGM-TTRLIGALIMVHGDNSGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ I    +   +   ++  +L      V  DD  +  G +F+  ++ 
Sbjct: 284 VLPPRIAPTQVVIVPIMQKKEGVLEKAAELREKLGAFRVKV--DDSDKSPGWKFSEHEMR 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G K +  ++  +  R T  +  +SL+E+
Sbjct: 342 GIPVRVEIGPKDIEANQAVLVRRDTREKTVVSLDEI 377


>gi|19074578|ref|NP_586084.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74697534|sp|Q8SRH2|SYTC_ENCCU RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19069220|emb|CAD25688.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 640

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 152/389 (39%), Gaps = 47/389 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           ++S G   +LP G    + +   +REE  + G  E+  P +    LW ESG   +Y + M
Sbjct: 256 KYSPGSCFFLPNGTTMYNTLIEFLREEYRKRGFKEVITPNIFCTQLWEESGHLQNYKENM 315

Query: 94  LRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
             +  D      +  P H      +FR    S+R+LP       +  R+EL     G+ R
Sbjct: 316 FIIEGDTFALKPMNCPGH----CVMFRHQDHSFRDLPLRLADFGVLHRNELSGTLTGLTR 371

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  T +  K    K  + +L   +                 G     F 
Sbjct: 372 VRRFQQDDAHIF-CTKDQVKEEI-KGCLEFLSFVY-----------------GVFGFRFE 412

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           ++  T   +   S D  D    +     D+      I     A Y    D+    L D+L
Sbjct: 413 LVLSTRPEKYLGSVDEWDRAEKALADAMDESNMPFKINAGDGAFYGPKIDI---TLHDAL 469

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIE 330
              +R+    I++   F    ++ L     ++ +DG+     +    I G++  + A+I 
Sbjct: 470 --GRRIQCATIQLD--FQLPQRFEL----KYRDSDGQCRTPVIIHRAILGSIERMIAIIL 521

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            S   +   W   ++P +I+++N+   D V      K+ + L++   DV   D G  +  
Sbjct: 522 ESFGKRLPFW---ISPRQIAIVNMGNPDYV-----GKVRSVLARFRLDVI--DDGNTLSK 571

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   A+  G+ L  +VG K    +++ I+
Sbjct: 572 RIRTAETSGYALVCVVGKKEAEANEINIR 600


>gi|320547963|ref|ZP_08042245.1| serine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320447387|gb|EFW88148.1| serine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 425

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD +D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD-SDYVLI--PTAEVPLTNYYRGEILDGKELPVYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +LGL 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPETSYDELEKMVVNAENILQKLGL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|295111084|emb|CBL27834.1| prolyl-tRNA synthetase [Synergistetes bacterium SGP1]
          Length = 479

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 24/172 (13%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A+ ++ G   + G  ++      F+  DG+       S+GI + R++ A+I +  D  G+
Sbjct: 219 AKALQAGTSHFLGQNFARAFEIRFQDRDGELATCWTTSWGI-STRLIGAIIMTHSDDDGL 277

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP K+ L+ I   ++        +   LS          + E +G  +   D  
Sbjct: 278 VLPPHIAPVKVVLLPISKDERQAEGVLLPMARELS--------GQLDEALGGLYTAVDTQ 329

Query: 399 ---------------GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                          G PL++ +G K V    V +  R TG + D+S + ++
Sbjct: 330 FHMRPGDRFFTHLQRGVPLRLELGEKDVQSGTVRVVRRDTGEKADLSRDALV 381



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 6/155 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           +G     P G    +NV     +   RTG +    P L  ++ L  E+   + +  E   
Sbjct: 32  RGCMVIRPTGYSIWENVQRYFDDAFKRTGHVNAYFPLLIPNSFLQKEAEHVEGFAPECAM 91

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +  ++     PT E V+  ++   I+S+R+LP    Q     R E RPR   +R
Sbjct: 92  VTHAGGEELEEPFAVRPTSETVIGHMYSRWIQSWRDLPVLINQWCNVMRWEKRPRL-FLR 150

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           + EFL ++ ++   T + ++    +M   Y ++  
Sbjct: 151 TSEFLWQEGHTAHATEQEAREETLRMLEVYRKVME 185


>gi|255560023|ref|XP_002521030.1| threonyl-tRNA synthetase, putative [Ricinus communis]
 gi|223539867|gb|EEF41447.1| threonyl-tRNA synthetase, putative [Ricinus communis]
          Length = 691

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             HQ S G + +LP G +  + +   IR +    G  E+  P + +  LW  SG   +Y 
Sbjct: 333 FCHQLSPGSWFFLPHGTRIYNKLMDFIRVQYRERGYEEVKSPNIYNMKLWETSGHAANY- 391

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE + L +   +     P +      IF+  ++SYR LP       +  R+E      G+
Sbjct: 392 KENMFLLEIEKQEFGLKPMNCPGHCVIFQHRVRSYRELPLRLADFGVLHRNEASGALTGL 451

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 452 TRVRRFQQDDAHIF 465


>gi|300087925|ref|YP_003758447.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527658|gb|ADJ26126.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 584

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/393 (19%), Positives = 150/393 (38%), Gaps = 51/393 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P   +    V    R+     G   +  P +  ++LW  SG   +Y   M    
Sbjct: 202 GLVIYGPKAGRIRTTVEEFWRKAHYDHGYELLYTPHIGRSNLWETSGHLQNYRDIMYSPM 261

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D + +     P +       ++S ++SYR+LP  + ++   +R E      G++R R F 
Sbjct: 262 DIDGQDYYVKPMNCPFHILFYKSQMRSYRDLPLRWAELGTVYRYERSGVLHGLLRVRGFT 321

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+    TPE  +   +++      ++   G   + +   + P   IG DL       
Sbjct: 322 QDDAHII-CTPEQIETEIDEVLRFSFEMWRTFGFTDLKLFLATRPEKAIGTDL------- 373

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                 Q   + D +   + +   ++       S+ E   A Y    D+   K+ D L  
Sbjct: 374 ------QWQQASDALRRVMDARGLEY-------SLDEGGGAFYGPKIDI---KVRDVLGR 417

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIE 330
             +++    +          ++LP      + G DG++H   M     +G+      ++ 
Sbjct: 418 EWQMTTIQFD----------FNLPERFDMVYTGQDGQEHRPYMVHRALLGSWERFFGLLI 467

Query: 331 SSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             + G   +W  P+ VA   I+  ++        +  ++I A+L K G  V  DD  E +
Sbjct: 468 EHYGGAFPVWLHPEQVAVLPIADRHL--------EYAQEITAKLKKAGVRVALDDRSETV 519

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +   A L   P  V++G K +    + ++ R
Sbjct: 520 NMKIRQAQLDKIPYIVVIGDKELEKGTLAVRLR 552


>gi|259047194|ref|ZP_05737595.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036244|gb|EEW37499.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 647

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 301 TFKGADGKD-HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           T+ G DG + H   +   G+   A R VA +IE     KG  +P  +AP + ++I +   
Sbjct: 500 TYVGEDGDNTHRPVVIHRGVVSTAERFVAYLIEEY---KGA-FPTWLAPVQATIIPVSVE 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                DA  ++  +++++G  V  DD  E++G +   +     P Q+++G K V +  V 
Sbjct: 556 HHY--DAARELKEKMARLGMRVELDDRNEKMGYKIRASQTQKIPYQLVIGDKEVEEGTVT 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN-NRPV 448
           ++   +   + MS+E  + Y     +N +RP+
Sbjct: 614 VRRYGSKETKSMSIEAYLEYVQREIANFSRPL 645



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 31  MIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q    G+  WLP G      +   I +++   G   +  P +    L+  SG +  Y
Sbjct: 252 MISQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPVMADVGLYKTSGHWAHY 311

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D + ++  P +      ++++HI SYR LP    ++ +  R E      
Sbjct: 312 QEDMFPPMDMGDGELLVLRPMNCPHHMMVYKNHIHSYRELPIRIAELGMMHRYEKSGALS 371

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           G+ R RE  + D ++F + P+  K  + ++ 
Sbjct: 372 GLQRVREMTLNDGHTF-VRPDQIKDEFKRIL 401


>gi|270308068|ref|YP_003330126.1| threonyl-tRNA synthetase (thrS) [Dehalococcoides sp. VS]
 gi|270153960|gb|ACZ61798.1| threonyl-tRNA synthetase (thrS) [Dehalococcoides sp. VS]
          Length = 582

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 151/405 (37%), Gaps = 60/405 (14%)

Query: 32  IHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +HQ    G+ +WLP G      +    ++E  + G   +  P +   DLW  SG +  Y 
Sbjct: 198 LHQEIGGGLVNWLPNGATIRHLIEEFWKKEHLKRGYNLVYTPHIAKVDLWKTSGHWGFYR 257

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           + M    D + +  +  P +      +F++  +SY+ LP    ++   +R E   R GV+
Sbjct: 258 ENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSYKELPIRMAELGTVYRYE---RSGVL 314

Query: 151 ----RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IG 203
               R R F   DA+ F L  +  K     + ++   I    G     +   + P   +G
Sbjct: 315 HGLSRVRGFTQDDAHIFCLYEQLEKEVVKVLDLAKFMI-DTFGFAKYKVMLSTRPEKYVG 373

Query: 204 GDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAA 258
                E+   +LA   E      +  +D   P E   +    DI   +++   W  P   
Sbjct: 374 ELAKWEYATDILAKALEANGISYQ--VD---PGEGVFYGPKIDIKFEDALGRAWQGP--- 425

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T  V  +     LPE   VS  G                        DGKD  V M    
Sbjct: 426 TIQVDFQ-----LPERFEVSVVG-----------------------EDGKDQPVAMVHRT 457

Query: 319 I-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           + G+M    + +   + G   +W   ++P ++ +I I        +  EK+   L +   
Sbjct: 458 VLGSMERFMSCLTEQYGGAFPVW---LSPKQVMIIPIADRHS---EFAEKLACELREEEV 511

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            V  D+  E +  +   A L   P  ++VG K +    + ++ R+
Sbjct: 512 RVEVDNRSETMNQKIRQAQLAKIPYMLVVGDKEIETGSIALRSRI 556


>gi|332558829|ref|ZP_08413151.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
 gi|332276541|gb|EGJ21856.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
          Length = 646

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 12/184 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    +   +R    + G  E+  P +    LW  SG +++Y +
Sbjct: 260 LQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRQAGYKEIRTPQVVDRKLWEASGHWEAYKE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    + A         P +      ++   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVEEEHAKEKRINALKPMNCPCHVQVYNQGLKSYRDLPLRLAEFGSCHRYESSGS 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F+  DA+ F    E    S    F+  L  ++  LG  S  ++  + P   
Sbjct: 380 MHGLMRVRGFVQDDAHIF--CTEDQIESECAAFIELLSSVYKDLGFDSFEIKLSTRPEVR 437

Query: 202 IGGD 205
           IG D
Sbjct: 438 IGSD 441


>gi|302774721|ref|XP_002970777.1| hypothetical protein SELMODRAFT_94171 [Selaginella moellendorffii]
 gi|300161488|gb|EFJ28103.1| hypothetical protein SELMODRAFT_94171 [Selaginella moellendorffii]
          Length = 528

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++ G     G  ++      F   +G   ++   S+G+ + R+V  +I +  D KG++
Sbjct: 267 RALQAGTSHNLGQNFARAFETQFTDVNGDLQHIWQTSWGM-STRMVGGIIMTHGDDKGLM 325

Query: 340 WPDSVAPFKISLINI--KAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVA 395
            P  +AP ++ ++ I  K  +Q     A  K+ + +   G  V  D   ++  G +F   
Sbjct: 326 LPPKLAPIQVVIVPIWKKGDEQEAVLQAAHKVESLVRAAGIRVKLDTFDQRTPGWKFNHW 385

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +L G P+++ +G K V+++ V +  R
Sbjct: 386 ELKGVPIRIEIGPKDVANNSVVVARR 411


>gi|261752375|ref|ZP_05996084.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261742128|gb|EEY30054.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 660

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K    + + +R   + 
Sbjct: 237 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQKLVSYMRRRLDS 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 293 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 352

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 353 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 411

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 412 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 442


>gi|71908290|ref|YP_285877.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
 gi|123733181|sp|Q47CM4|SYT_DECAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71847911|gb|AAZ47407.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
          Length = 638

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +   + G+  W P G      +   +R      G  E+  P +    LW +SG ++ Y  
Sbjct: 255 MQDEAPGLVFWHPKGWAIWQEIEGYMRAVYRNNGYQEVRCPQILDKSLWEKSGHWEHYKD 314

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N    +  P +      +F + ++SYR LP  + +     R+E      G+M
Sbjct: 315 NMFTTSSENRDYAV-KPMNCPGHVQVFNAGLRSYRELPLRYGEFGSCHRNEPAGALHGLM 373

Query: 151 RSREFLMKDAYSF 163
           R R F+  D + F
Sbjct: 374 RVRGFVQDDGHIF 386


>gi|227872945|ref|ZP_03991245.1| proline--tRNA ligase [Oribacterium sinus F0268]
 gi|227841197|gb|EEJ51527.1| proline--tRNA ligase [Oribacterium sinus F0268]
          Length = 478

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           FG  ++      +   +     V   S+GI   R + A+I    D  G++ P  +AP ++
Sbjct: 235 FGDGFAKAFQVQYLSKNNTVEPVHQTSWGI-TTRTIGALIMVHGDDSGLVLPPRIAPVQV 293

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++I I+ + +   D    +   L   G  V  DD  +  G +FA +++ G PL++ +G K
Sbjct: 294 NIIPIQQNKEGVLDKAFDLMNTLMDAGLRVKVDDSDKTPGFKFADSEVRGIPLRLEIGPK 353

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +   +V +  R T  +  +S E ++ 
Sbjct: 354 DIEAGQVVLVRRDTREKIVVSFENLVE 380



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    +N+ A +      TG    S+P L    L   ES   + +  E+  
Sbjct: 37  KGFMVIRPAGYAIWENIMAALDSRFKATGVQNCSMPLLIPQSLLEKESEHVEGFAPEVAW 96

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    + R ++ +   PT E +  D +   +KSYR+LP    Q    +++    RP    
Sbjct: 97  VTSGGSKRLEERLCVRPTSEVLFCDYYSKVVKSYRDLPQLLNQWCSVVRWEKTTRP---F 153

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +R+REFL ++ ++   T E ++     M   Y  +  
Sbjct: 154 LRTREFLWQEGHTVHATAEEAEERTLLMLDIYADVLE 190


>gi|111020488|ref|YP_703460.1| prolyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|110820018|gb|ABG95302.1| proline--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 530

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 3/146 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y G K++      F    G++      S+G+ + R++  ++ +  D KG+
Sbjct: 273 GRALQSGTSHYMGIKFASAFDIRFTSETGREELCHTTSWGM-STRMIGGIVMTHGDDKGL 331

Query: 339 IWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           ++P  +AP ++ ++ I +  +     A +++  RL  VG     D       G ++   +
Sbjct: 332 VFPPRLAPHQVVIVPITRGGNVAVEGAADELAHRLRSVGVRTHVDARPHLTPGFKYNEWE 391

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + G P+++ +G + + D  V +  RL
Sbjct: 392 MRGVPVRLELGPRDLEDGTVMMVKRL 417



 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ ++    I S+R+LP    Q     R ELRPR   +R+ EFL ++ 
Sbjct: 155 EEPLVVRPTSETIIGEMMAKWISSHRDLPLLLNQWANVVRWELRPRM-FLRTTEFLWQEG 213

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LKSIPM 195
           ++  +     + S  +  +  L I+H +   L +IP+
Sbjct: 214 HTAHV----DEASARRETMLALDIYHEVARELAAIPV 246


>gi|269468318|gb|EEZ79994.1| threonyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 369

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 14/180 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H KG      L Q     + ++ R+   +    E+  P L    LW +SG +D +
Sbjct: 64  GMVFWHEKG----WTLYQIVEQYMRSVFRDNDYK----EVHTPQLIDKSLWEKSGHWDKF 115

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           G  M   +  N    +  P +      I+   +KSYR+LP    +     R+E      G
Sbjct: 116 GDAMFTTSSENRDYAV-KPMNCPAHIQIYNQGLKSYRDLPLRLAEFGSCHRNEPSGTLHG 174

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F+  D + F  T    +   +        ++   G +++ ++  + P   +G D
Sbjct: 175 IMRVRNFVQDDGHIF-CTENQIQDEVSTFIDLTFDVYKNFGFENVDIKLSTRPENRVGSD 233


>gi|254701818|ref|ZP_05163646.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 658

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 17/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K    + + +R   + 
Sbjct: 235 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQKLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLRI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G + I ++  + P   +G D
Sbjct: 410 NDLILSVYKDFGFEEITIKLSTRPEKRVGSD 440


>gi|229823243|ref|ZP_04449312.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
 gi|229787409|gb|EEP23523.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
          Length = 647

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 3/161 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   I +++   G   +  P +   DL+  SG +  Y  +M    
Sbjct: 262 GLPFWLPKGATIRRVIERYIMDKEISLGYDHVYTPIMAKVDLYQTSGHWAHYKDDMFPPM 321

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           D  D  M +  P +      I+++ I SYR LP    ++ +  R E      G+ R RE 
Sbjct: 322 DMGDGEMLVLRPMNCPHHMMIYKNDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREM 381

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            + DA+ F + P+  K  + ++      ++H  G+     R
Sbjct: 382 TLNDAHIF-VRPDQIKEEFIRVLDLIKAVYHDFGITDYRFR 421



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 301 TFKGADGKDHY--VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISL--INIK 355
           T+ G DG+D++  V +    +  M R VA +IE     KG  +P  +AP +++L  ++++
Sbjct: 502 TYVGEDGQDNHRPVVIHRGVVSTMERFVAYLIEEY---KGA-FPTWLAPVQVALLPVSLE 557

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           AH     D  ++IY  L   G  V  D   E++G +   A     P Q+++G + VS+  
Sbjct: 558 AHS----DRVQEIYEDLKAKGFRVDMDLRNEKLGYKIRSAQTAKIPYQIVIGDQEVSEGT 613

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++H  +   E  S ++ +   S   +N 
Sbjct: 614 VNVRHYGSAKSESYSYDDFVRLLSEDVANK 643


>gi|169244471|gb|ACA50509.1| aminoacyl-tRNA synthase [Oryza sativa Japonica Group]
          Length = 510

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RG++       G  ++     TF+   G    V   S+     R +  ++ +  D KG
Sbjct: 245 TGRGVQGATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWAY-TTRSIGVMVMTHGDDKG 303

Query: 338 IIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
           ++ P  VAP ++ +I +   D       + C+K    L K G     D       G +++
Sbjct: 304 LVLPPRVAPLQVIVIPVPYKDVDTTAIVNECKKTVETLEKAGIRADLDTRANYSPGWKYS 363

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             ++ G PL++ +G K +++++  +  R  G + D+   +++
Sbjct: 364 HWEMKGVPLRIEIGPKDMANNQARVVRRDNGAKADIPTADLV 405



 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F   I+S+R+LP    Q     R E       +RSREFL ++ ++   T 
Sbjct: 133 PTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 192

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y RI+   
Sbjct: 193 EEADEEVLQILELYRRIYEEF 213


>gi|315648100|ref|ZP_07901201.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315276746|gb|EFU40089.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 485

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT +S      +   +    Y    S+G+ + R++ ++I    D +G+
Sbjct: 228 GRAVQAGTSHYMGTNFSQAFEIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVHGDDRGL 286

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           + P  VAP ++ +I I   K  + V     ++++  L   G  V  DD  + + G +F  
Sbjct: 287 VLPPKVAPTQVIMIPIGPPKTREAVV-GRTDELFRELKSAGIRVRVDDNPDVRPGWKFNE 345

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ G P+++ +G + + +    +  R+TG
Sbjct: 346 YEMRGVPVRLEIGPRDMENGVCVLVSRITG 375


>gi|158523204|ref|YP_001531074.1| threonyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|238686905|sp|A9A078|SYT_DESOH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|158512030|gb|ABW68997.1| threonyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 637

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ + G+  + P G K  + +    R E    G +E+  P +    LW +SG +++Y + 
Sbjct: 252 HEEAAGMPFFHPNGMKLWNALLDYWRLEHRAAGYVEVKTPVMLDRALWEKSGHWENYREN 311

Query: 93  M-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           M + + D N  A+   P +      +++    SYR+LP    +I L  R EL     G+ 
Sbjct: 312 MYVSVIDDNQYAI--KPMNCPGGMLLYKEKRYSYRDLPLRVAEIGLVHRHELSGVLSGLF 369

Query: 151 RSREFLMKDAYSFDLTPE 168
           R R F   DA+ F +TP+
Sbjct: 370 RVRAFHQDDAHIF-MTPD 386


>gi|83942907|ref|ZP_00955367.1| threonyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83845915|gb|EAP83792.1| threonyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 649

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 139/401 (34%), Gaps = 58/401 (14%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G +  H+ G   WL   Q     +   +R +Q   G +E++ P +    LW  SG ++ Y
Sbjct: 266 GQVFWHANG---WLIYTQ-----LQDYMRRKQRAGGYVEVNTPQVVDRKLWEASGHWEKY 317

Query: 90  GKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
              M  +       R        P +      IF   +KSYR+LP    +     R E  
Sbjct: 318 QDHMFIVEVDEEHAREKSVNALKPMNCPCHVQIFNQGLKSYRDLPLRMAEFGSCNRYEPS 377

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPI 202
               G+MR R F   D + F    E    +    F+ +L  I+  LG ++  ++    P 
Sbjct: 378 GALHGIMRVRGFTQDDGHIF--CAEDQIEAETAKFIEFLSGIYKDLGFENFSVKFSDRPE 435

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAAT 259
               S E    A+                 P E   +    + +  ++I   W       
Sbjct: 436 KRSGSDEVWDKAEAALLSATRKAGIEPTLNPGEGAFYGPKLEFVLTDAIGRDWQCGTHQV 495

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYG 318
             V        LPE                        + AT+ G+DG  H  V +    
Sbjct: 496 DFV--------LPER-----------------------LDATYIGSDGAKHRPVMLHRAT 524

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G+      ++   H GK   W   +AP ++ + +I +      D   ++ A L   G  
Sbjct: 525 LGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITSE---ADDYVHEVVATLKAQGVR 578

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   E+I  +     +   P+ + VG++ V +  V ++
Sbjct: 579 ADADIRNEKINYKVREHSVGKVPVILAVGAREVEEKTVSVR 619


>gi|3859700|emb|CAA21975.1| mitochondrial threonyl tRNA synthetase [Candida albicans]
          Length = 455

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 176/450 (39%), Gaps = 77/450 (17%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P +    L
Sbjct: 36  ISSKQLLYTTDPT---SPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPLIFKTKL 92

Query: 80  WVESGRYDSYGKEMLRLADR---------NDKAMIYG--PTHEEVMTDIFRSHIKSYRNL 128
           W +SG +D+Y  +M ++            N +   YG  P +      IF    +SY+ L
Sbjct: 93  WKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMNCPSHCMIFAKFDRSYQEL 152

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF----------DLTPEGSKHSYNKM 177
           P  +       R+E      G+ R R F   D + F            T E  K +YN  
Sbjct: 153 PVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMDQIDGEIKNTLELIKDTYNVF 212

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            ++ +  +       +  R E   IG       I   D  E+Q+   K+ ++      N 
Sbjct: 213 GINEIEFY-------LSTRPEDKFIGE------IETWDIAESQL---KNVLNSTAGEGNW 256

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    +  E   A Y    DV  +  F     NK+     I++   F    ++ L 
Sbjct: 257 ---------ATREGDGAFYGPKIDVLLKDAF-----NKKHQVGTIQLD--FQLPNRFEL- 299

Query: 298 MSATFKGADGK-DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
               + G DGK DH   +    + G++    A++   + GK   WP  + P +  ++ I 
Sbjct: 300 ---KYVGEDGKRDHQPILVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQALIVPIN 353

Query: 355 KAHDQVCRD----------ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           ++H  V  +          +C+   A L+     V  D  GE +G++   A   G+   +
Sbjct: 354 ESHVPVAEELQKKLSGDIVSCDNAIAPLTGFTFHVDIDKRGETVGARTKDAIQKGYSYLI 413

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++G K +++    ++ R     ++M+ +E+
Sbjct: 414 MIGDKDIANGTFAVRSRDDRKIKNMTSDEI 443


>gi|31544379|ref|NP_852957.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|81572846|sp|Q7NBT5|SYT_MYCGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|31541223|gb|AAP56525.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930421|gb|ADC30360.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 573

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 162/430 (37%), Gaps = 96/430 (22%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP GQ     +   +   Q + G + ++ P L + DL+ +SG Y+ Y K+M   L
Sbjct: 194 GMPIWLPNGQIVRQLIGDYVHSVQKKFGFMAVNTPILGNVDLYKKSGHYNHYAKDMFPEL 253

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF-RDELRPRF------ 147
            L D  DK M+   T           H   Y N P  +Y + ++   D L  R+      
Sbjct: 254 ALLD-GDKMMLRPMTCPH--------HCLVYLNKPRNYYDLPMRLSEDALLHRYEASGGL 304

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV------SYLRIFHRLGL---------- 190
            G+ R R   + D + F    +      N   V      ++   FHR+ L          
Sbjct: 305 TGLERVRAMTLLDNHIFCRLDQIKTEILNAYQVIKEVIGTFNLKFHRIDLSLHDPNDKQS 364

Query: 191 ----KSIPMRAESGPIGG--DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               + +  R+E+       DL  E+      GE   +  K  +DF +    T  + II+
Sbjct: 365 FIDNEQMWARSENQLEDALKDLGLEYT--KQVGEAAFYGPK--IDFQV---KTALNKIIT 417

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +++I   ++ P     D+             +      E G I + G             
Sbjct: 418 VSTIQLDFSLPSEEKFDI-----------KYKTKDNTYEQGVIIHLGI------------ 454

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCR 362
                    +G+Y     R VA ++E +  G   +W   +AP +  +I  N   H + C 
Sbjct: 455 ---------IGTYE----RFVATLLEQTK-GALDLW---LAPKQAVIIPVNNSVHLEGCN 497

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+ AR  +V      D   E++  +     +   P+Q+I+G   + +  + I +RL
Sbjct: 498 QLLEKLLARDLRVTV----DSRDERLNKKIRDHQVNKIPVQIIIGDNELKNPDL-ITYRL 552

Query: 423 TGIREDMSLE 432
            G  +   LE
Sbjct: 553 YGQEDSNQLE 562


>gi|255071699|ref|XP_002499524.1| predicted protein [Micromonas sp. RCC299]
 gi|226514786|gb|ACO60782.1| predicted protein [Micromonas sp. RCC299]
          Length = 613

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 75/400 (18%), Positives = 146/400 (36%), Gaps = 38/400 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G    D +    ++     G   +  P +   DLW  SG  D Y + M R  
Sbjct: 236 GLVFWHPKGALMRDMIERFWKDIHLERGYDLLYTPHVGKLDLWKTSGHADFYSENMYRPI 295

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  D+     P +      +++    SYR+LP  + ++   +R E      G+ R R F 
Sbjct: 296 DVEDETYQLKPMNCPFHVAVYKDGYFSYRDLPIRWAEMGTVYRYERSGTMHGLFRVRGFT 355

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L P+        +      I    G K   +   + P       E    A+ 
Sbjct: 356 QDDAHIFCL-PDQIADEIKGVLDLTEDILSTFGFKEFEVNLSTQPEKSVGGPEIWDKAEG 414

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                   K + D+ +      F                Y    D+   K+ D++    +
Sbjct: 415 ALKDALAQKGW-DYEVDEGGGAF----------------YGPKIDI---KILDAIGRKWQ 454

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            S   ++    F    ++ L   A     + K   + +     G++     ++  ++ G 
Sbjct: 455 CSTVQLD----FNLPERFDL---AYIDKENVKQRPIMIHRAIFGSLERFFGILTENYAGA 507

Query: 337 GIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +W   +AP ++ L+ +  A D   ++   K+  R + + CDV      E++      A
Sbjct: 508 FPLW---IAPTQVRLLPVTDAVDDYVQETARKL--RAAGIRCDV---QSQERLAKLVRNA 559

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +    P+  +VG +   D  + ++    G +  +S+++V+
Sbjct: 560 EKAKIPVMCVVGEQEAKDGTLAVRTYADGDQGVLSVDDVV 599


>gi|220926910|ref|YP_002502212.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|219951517|gb|ACL61909.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W P G      + A +R  + +    E++ P +    LW  SG +D Y + 
Sbjct: 257 QEEGPGVVFWHPKGWTLFQELIAYMRR-RLKGDYREVNAPQILDKALWETSGHWDWYREN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M      +++     P +      IF+  +KSYR+LP    +     R E      G+MR
Sbjct: 316 MFVTKTEDERVFAIKPMNCPGHVQIFKHGLKSYRDLPLRLAEFGAVSRYEPSGALHGLMR 375

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 376 VRAFTQDDAHVF 387


>gi|77463957|ref|YP_353461.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides 2.4.1]
 gi|123757748|sp|Q3J0X4|SYT_RHOS4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77388375|gb|ABA79560.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 646

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 12/184 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    +   +R    + G  E+  P +    LW  SG +++Y +
Sbjct: 260 LQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRQAGYKEIRTPQVVDRKLWEASGHWEAYKE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    + A         P +      ++   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVEEEHAKEKRINALKPMNCPCHVQVYNQGLKSYRDLPLRLAEFGSCHRYESSGS 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F+  DA+ F    E    S    F+  L  ++  LG  S  ++  + P   
Sbjct: 380 MHGLMRVRGFVQDDAHIF--CTEDQIESECAAFIELLSSVYKDLGFDSFEIKLSTRPEVR 437

Query: 202 IGGD 205
           IG D
Sbjct: 438 IGSD 441


>gi|126462800|ref|YP_001043914.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|166225489|sp|A3PLC6|SYT_RHOS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126104464|gb|ABN77142.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 646

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 12/184 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    +   +R    + G  E+  P +    LW  SG +++Y +
Sbjct: 260 LQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRQAGYKEIRTPQVVDRKLWEASGHWEAYKE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    + A         P +      ++   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVEEEHAKEKRINALKPMNCPCHVQVYNQGLKSYRDLPLRLAEFGSCHRYESSGS 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F+  DA+ F    E    S    F+  L  ++  LG  S  ++  + P   
Sbjct: 380 MHGLMRVRGFVQDDAHIF--CTEDQIESECAAFIELLSSVYKDLGFDSFEIKLSTRPEVR 437

Query: 202 IGGD 205
           IG D
Sbjct: 438 IGSD 441


>gi|221639813|ref|YP_002526075.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|254783534|sp|B9KKC7|SYT_RHOSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221160594|gb|ACM01574.1| Threonyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 646

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 12/184 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    +   +R    + G  E+  P +    LW  SG +++Y +
Sbjct: 260 LQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRQAGYKEIRTPQVVDRKLWEASGHWEAYKE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    + A         P +      ++   +KSYR+LP    +     R E    
Sbjct: 320 NMFIVEVEEEHAKEKRINALKPMNCPCHVQVYNQGLKSYRDLPLRLAEFGSCHRYESSGS 379

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP--- 201
             G+MR R F+  DA+ F    E    S    F+  L  ++  LG  S  ++  + P   
Sbjct: 380 MHGLMRVRGFVQDDAHIF--CTEDQIESECAAFIELLSSVYKDLGFDSFEIKLSTRPEVR 437

Query: 202 IGGD 205
           IG D
Sbjct: 438 IGSD 441


>gi|305664978|ref|YP_003861265.1| prolyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88707390|gb|EAQ99635.1| prolyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 491

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   +GK  YV   S+G+ + R++ A++ +  D  G+
Sbjct: 233 GKALQAGTSHFLGQNFAKAFDVKFATKEGKQEYVWATSWGV-STRLMGALVMTHSDDSGL 291

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKI---YARLSKVGCDVFWDDM-GEQIGSQFAV 394
           + P  +AP ++ ++ I    +      EK+      L   G  V +D     + G +F  
Sbjct: 292 VLPPKLAPIQVVIVPIYRGLEQLDAISEKVGPLVKELRAKGISVKYDSRDTHKPGFKFNE 351

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +L G P+++ +G + + +   E+  R T  +  +  +EV++
Sbjct: 352 YELKGVPVRLAIGQRDMENGTYEVARRDTFEKVTIPEDEVVS 393



 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 85  RYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           + D  GK ++   D + ++ +I  PT E ++ D +R  I+SYR+LP    Q     R E+
Sbjct: 98  KNDESGKGIIVDPDAKLEEELIVRPTSETIIWDTYRKWIQSYRDLPLLINQWANVVRWEM 157

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           R R   +R+ EFL ++ ++   T + +     +M   Y
Sbjct: 158 RTRL-FLRTAEFLWQEGHTAHATEKEAIEEAEQMMHVY 194


>gi|325288434|ref|YP_004264615.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963835|gb|ADY54614.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 636

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H    G   + P G    + +    R+E  + G +E+  P + +  LW +SG +D Y K
Sbjct: 255 LHDEGPGFPFFHPKGMVIRNLLEDFWRKEHFKRGYVEIKTPIILNRALWEQSGHWDHY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E +     +       P +      ++++ ++SYR+LP    ++ L  R EL     G++
Sbjct: 314 ENMYFTKIDGVDFAVKPMNCPGGMIMYKTKLRSYRDLPIRCGELGLVHRHELSGALHGLL 373

Query: 151 RSREFLMKDAYSFDL 165
           R R F   DA+ F L
Sbjct: 374 RVRNFTQDDAHIFML 388


>gi|157370384|ref|YP_001478373.1| threonyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166987325|sp|A8GDQ5|SYT_SERP5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157322148|gb|ABV41245.1| threonyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 642

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +   N+       ++   G   I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVRAEVNECIRMVYDVYGTFGFDKIAVKLSTRPEKRIGTD 431


>gi|19112954|ref|NP_596162.1| cytoplasmic proline-tRNA ligase Prs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74582353|sp|O60155|YHY6_SCHPO RecName: Full=Putative prolyl-tRNA synthetase C19C7.06; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|3218410|emb|CAA19574.1| cytoplasmic proline-tRNA ligase Prs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 716

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 304 DEPIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 363

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  +T EG+    +++   Y RI+  L
Sbjct: 364 HTAHMTLEGATEEVHQILDLYARIYTDL 391


>gi|315230254|ref|YP_004070690.1| threonyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315183282|gb|ADT83467.1| threonyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 625

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 131/330 (39%), Gaps = 50/330 (15%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SY++LP   Y++ +  FR E R    G+ R R F M D ++     + +   + K +   
Sbjct: 311 SYKHLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTVAKDLKQAMEEFKKQYKLS 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD- 240
           + +   +GL                        D  E  +  ++DF +     EN DF  
Sbjct: 371 MEVLKGVGLTP----------------------DDYEVAIRFTEDFWN-----ENKDFVV 403

Query: 241 ---DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               II    ++E W   +            D+L +   +S   I+V +   FG      
Sbjct: 404 ELVKIIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFGI----- 458

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAM-RVVAAVIESS----HDGKGIIWPDSVAPFKISL 351
              T+   DGK+ H + +     GA+ RV+ A++E      + GK  ++P  ++P ++ +
Sbjct: 459 ---TYYDEDGKEKHPLILHCSPSGAIERVMYAILEKQAKLRNQGKKPMYPLWLSPIQVRV 515

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +   ++   D    I  +L      V  DD  +++  +   A+    P  ++VG    
Sbjct: 516 IPV---NEDYLDYALYIAGKLEGARIRVDVDDTSDRLTKKIRKAEKEWIPYIIVVGENEK 572

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               + ++ R  G + +M LE++I     R
Sbjct: 573 RQGIITVRKREDGKQYEMQLEDLIKEIKQR 602


>gi|237752912|ref|ZP_04583392.1| threonyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375179|gb|EEO25270.1| threonyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 605

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +   N+  ++ +     G   +  P +  + +W  SG Y +YG+ M    
Sbjct: 231 GLPIWLPKGARLRRNLENLLTQALIERGYEPVRGPEILKSAVWKTSGHYANYGENMY-FT 289

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      ++++ + SYR LP  FY+  +  R E      G++R REF 
Sbjct: 290 TIDEVEYGIKPMNCVGHIKVYQNSLHSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFT 349

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 350 QDDAHIF 356


>gi|303284080|ref|XP_003061331.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457682|gb|EEH54981.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 489

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 131/336 (38%), Gaps = 76/336 (22%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 97  EEPLVVRPTSETIVNHMFSQWIQSYRDLPLLMNQWANVHRWEMRTR-PFIRTLEFLWQEG 155

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E ++    +M                           D+  EF          
Sbjct: 156 HTAHATAEEAEERAVQMI--------------------------DVYREF---------- 179

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              ++D    P+         I+   S VE +       +  +N    +++  +KR    
Sbjct: 180 ---AEDVAAMPV---------IVGRKSRVETF-------AGANNTYTIEAMMGDKR---- 216

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-- 338
            ++ G     G  ++     TF   +GK  +V   S+G+ + R++  +I +  D  G+  
Sbjct: 217 ALQAGTSHNLGQNFAKAFDTTFLDENGKTQHVHQSSWGV-STRLIGGIIMTHGDDVGLRR 275

Query: 339 ---------IWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDV-FWDDMG 385
                      P ++AP ++ ++ I   +   +    A   +   L+  G  V   DD  
Sbjct: 276 VLYTGPHTTALPPALAPIQVVVVPIAQKNKDKESVNAAASAVVKTLTDAGVRVKLDDDER 335

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +FA  ++ G P++V +G K V++    +  R
Sbjct: 336 NSPGWKFAQWEMKGVPIRVEIGPKDVANDACVLARR 371


>gi|189091896|ref|XP_001929781.1| hypothetical protein [Podospora anserina S mat+]
 gi|27803058|emb|CAD60761.1| unnamed protein product [Podospora anserina]
 gi|188219301|emb|CAP49281.1| unnamed protein product [Podospora anserina S mat+]
          Length = 783

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 17/165 (10%)

Query: 15  PRDAEIASHKLMLRTGMIHQH---------------SKGIYSWLPLGQKALDNVNAIIRE 59
           P   ++A+HK  L       H               S G   WLP G +  + +   I+E
Sbjct: 299 PDKKQMAAHKKFLEEAAKRDHRLIGKQQELFYFEECSPGSAMWLPHGMRIHNAIMDYIKE 358

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    G  E+  P + +  LW +SG    Y ++M  L D + +     P +      +FR
Sbjct: 359 EYWARGYDEVMTPNMFNVSLWEQSGHLAHYKEDMF-LLDVDKEQFGLKPMNCPAHAMMFR 417

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              +S++ LP       +  R+E      G+ R R F   DA+ F
Sbjct: 418 HRERSHKELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF 462


>gi|260463880|ref|ZP_05812076.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259030255|gb|EEW31535.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 658

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/418 (20%), Positives = 153/418 (36%), Gaps = 52/418 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G K   N+   +R   +  G  E++ P +    LW  SG +  Y   
Sbjct: 260 QEEGPGVVFWHAKGWKMFQNLVNYMRRRLDEQGYQEVNAPQVLDKSLWETSGHWGWYRDA 319

Query: 93  MLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M ++        +D+     P +      IF+  +KSYR+LP    +     R E     
Sbjct: 320 MFKVTVAGDDTDDDRVFALKPMNCPGHVQIFKHGLKSYRDLPVKLAEFGNVHRYEPSGAL 379

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IG 203
            G+MR R F   DA+ F  T E       ++    L  +   G + + ++  + P   +G
Sbjct: 380 HGLMRVRGFTQDDAHIF-CTEEQLAAECLRINDLILSTYADFGFEEVSVKLSTRPDKRVG 438

Query: 204 GD--LSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDFD---DIISLNSIVEQWTAPYA 257
            D    H   ++ +  ET    S + +   I P E   +    + +  ++I  +W     
Sbjct: 439 TDEAWDHAEAIMGNVLETIRTRSGNRIKTSINPGEGAFYGPKFEYVLKDAIGREWQ---C 495

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T+ V       +LPE  R  A        FY G+               K   V +   
Sbjct: 496 GTTQVDF-----NLPE--RFGA--------FYIGSDSE------------KKQPVMVHRA 528

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G+M     ++  ++ G   +W    AP ++ +  I +          ++ A+L   G 
Sbjct: 529 ICGSMERFLGILIENYSGHFPLW---FAPLQVVVATITSE---ADGYATEVVAKLKAAGL 582

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               D   E+I  +     L   P+ ++ G +   +  V I+   +  ++ + L E I
Sbjct: 583 LAEADLRNEKINYKVREHSLAKVPVILVCGKREAEEQTVNIRRLGSRDQQSLGLAEAI 640


>gi|205356549|ref|ZP_03223312.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345554|gb|EDZ32194.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 510

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/448 (20%), Positives = 175/448 (39%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 103 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 161

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 162 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 220

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV +
Sbjct: 221 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDN 280

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +++F                   D S+E  +   T   +     +  +    +     D
Sbjct: 281 LMKLF-------------------DFSYEMEI--STKPEKAIGDDEIWEIATKALKEALD 319

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+   K+ D+L        R  + G I      ++LP   
Sbjct: 320 EQGLKYGIDEGGGAFYGPKIDI---KITDAL-------KRKWQCGTI---QVDFNLPSRF 366

Query: 301 TFKGADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
             +  D    K   V +    +G+      ++     G+   +P  +AP  + ++ I +A
Sbjct: 367 KLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPTAVGIVPIGEA 423

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H    ++    I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V
Sbjct: 424 HIAYAKE----IQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSV 479

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R    ++++SL+E I     + S 
Sbjct: 480 ALRDRRAKEQKNLSLDEFIKLVKEKMSE 507


>gi|157414515|ref|YP_001481771.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047019|sp|A8FK07|SYT_CAMJ8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157385479|gb|ABV51794.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747157|gb|ADN90427.1| Threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315932015|gb|EFV10968.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 602

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  I+ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHILYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP  F++  +  R E      G+ R REF   DA+ F
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIF 353


>gi|71002510|ref|XP_755936.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66853574|gb|EAL93898.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159129993|gb|EDP55107.1| prolyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 637

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 200 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 259

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E ++     M   Y RI+  L
Sbjct: 260 HTAHLTEEAAREEVLHMLNLYARIYEEL 287


>gi|302820128|ref|XP_002991732.1| hypothetical protein SELMODRAFT_134156 [Selaginella moellendorffii]
 gi|300140413|gb|EFJ07136.1| hypothetical protein SELMODRAFT_134156 [Selaginella moellendorffii]
          Length = 647

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 5/151 (3%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+L+ +   +   H+ S G   +LP G    + +   IR E  + G  E+  P 
Sbjct: 272 EAKKRDHRLLGKNQQLFFFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRGFDEVVTPN 331

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG    Y KE + + +   +     P +      +F+  ++SYR LP    
Sbjct: 332 IYNMKLWEQSGHAAHY-KENMFVFEIEKQEFGLKPMNCPGHCLLFQHRVRSYRELPLRIA 390

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              +  R+EL     G+ R R F   DA+ F
Sbjct: 391 DFGVLHRNELSGALTGLTRVRRFSQDDAHIF 421


>gi|301768134|ref|XP_002919483.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
          Length = 723

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 161/417 (38%), Gaps = 57/417 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVSPNIYNSRLWMTSGHWQHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 453 TRVRRFQQDDAHIFCAIEQIEDEI--KGCLDFLRTVYNVFGFSFKLNLSTRPEKFLGD-- 508

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + +  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 509 ---IEVWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKID 545

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    TF   DG D    V +    +
Sbjct: 546 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TFVSHDGDDKKRPVIVHRAIL 594

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++  + A++  +  GK   WP  ++P ++ ++ +      C +  +K+  +       V
Sbjct: 595 GSVERMIAILTENFGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFTV 648

Query: 380 FWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D D G  +  +   A L  +   +++G K  +   V I+ R   +  + ++ E I
Sbjct: 649 DIDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTVNIRTRDNKVHGERTISETI 705


>gi|302339715|ref|YP_003804921.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636900|gb|ADK82327.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 585

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    ++E  + G   +  P +  + LW  SG  D Y + M    
Sbjct: 208 GLVYWHPKGARIRHQIETFWKDEHFKNGYELLYTPHVGKSWLWETSGHLDFYAEGMYPEM 267

Query: 98  DRNDKAMIYG-PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              DKA  Y  P +      I++++  SYR LPF + ++   +R E      G+MR R F
Sbjct: 268 -VMDKANYYAKPMNCPFHIMIYKTNKHSYRELPFRWAELGTVYRYEKSGTLHGLMRVRGF 326

Query: 156 LMKDAYSFDLTPE 168
              DA+ F  TPE
Sbjct: 327 TQDDAHIF-CTPE 338


>gi|282890339|ref|ZP_06298867.1| hypothetical protein pah_c016o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499721|gb|EFB42012.1| hypothetical protein pah_c016o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 641

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 20/210 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRT------GMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           Y   + +   RD ++   KL L +      GM   H KG   W        + + A +R+
Sbjct: 230 YLTSVEEAKKRDHKVLGAKLDLFSLKEEAPGMPFIHPKGTIIW--------NELLAYLRQ 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
             +    IE+  PT+ + DLW  SG + +Y + M   ++  ++     P +       +R
Sbjct: 282 CLDDKNYIEIKTPTMMTRDLWELSGHWSNYRQNMF-TSEIENRDFAIKPMNCPGCMLYYR 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             I SYR LP    +I    R E      G+ R R F   DA+ F + P   +     + 
Sbjct: 341 GQIHSYRELPLRVAEIGNVHRFEPSGSLSGLFRVRSFHQDDAHIF-MKPSDIRSEILNVL 399

Query: 179 VSYLRIFHRLGLK---SIPMRAESGPIGGD 205
                I+   GL     +  R E   IG D
Sbjct: 400 NLAHEIYSTFGLTYRLELSTRPEKNTIGTD 429


>gi|168012416|ref|XP_001758898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690035|gb|EDQ76404.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 613

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/406 (18%), Positives = 150/406 (36%), Gaps = 48/406 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++     G   +  P +   DLW  SG Y+ Y + M    
Sbjct: 237 GLVFWHPKGSMVRHIIEDYWKKMHFANGYELLYTPHIAKLDLWKTSGHYEFYKENMFDQM 296

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++     P +      +++  ++SYR LP    ++   +R E      G+ R R F 
Sbjct: 297 RIEEELYQIRPMNCPFHIQVYKDSLRSYRELPMRVAELGTVYRYERSGALHGLFRVRGFT 356

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D + F L P+  +     +      +  + G     +   + P     SHE    + T
Sbjct: 357 QDDGHIFCL-PDQIRDEIRGVLDLTEIVLKQFGFTKFEINLSTKPEKAVGSHEIWEKSTT 415

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +    K +                   SI E   A Y    DV   K+ D++    +
Sbjct: 416 ALREALQDKGWE-----------------YSIDEGGGAFYGPKIDV---KIEDAIGRKWQ 455

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRVVAAVIESSH 333
            S   ++          ++LP        D    +   + +    +G++     ++  ++
Sbjct: 456 CSTIQVD----------FNLPERFNMVYVDTDTSRKQPILIHRAILGSIERFFGILVENY 505

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD---VFWDDMGEQIGS 390
            G   +W   +AP +  L+ +  H+    D C+ + A+L + G     VF    GE++G 
Sbjct: 506 AGDFPLW---LAPVQARLLPVTDHEV---DYCKNVVAKLREKGIRAEVVF----GERLGK 555

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               A+    P+  +VG K V  + + ++ R  G    +SL+++ +
Sbjct: 556 LIRNAETQKIPVMAVVGPKEVESATLTVRTRHGGELGTLSLDDLTH 601


>gi|145593399|ref|YP_001157696.1| tRNA synthetase, class II (G, H, P and S) [Salinispora tropica
           CNB-440]
 gi|145302736|gb|ABP53318.1| tRNA synthetase, class II (G, H, P and S) [Salinispora tropica
           CNB-440]
          Length = 405

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 12/133 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G  A   V   +R+ + + G   +  P L   +L+  SG  D + +EM   +
Sbjct: 23  GLPLWLPAGAAARHAVEEYLRDLERQAGYQHVVTPPLGRRELFERSGHLDHFAEEMFPPM 82

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM---- 150
           RL+   D  ++  P+       ++R   +S+R+LP    ++   +R E   R GV+    
Sbjct: 83  RLS--ADDELVLRPSLCPHHALVYRCRGRSWRDLPLRIAEMGGMYRAE---RSGVLGGLA 137

Query: 151 RSREFLMKDAYSF 163
           R R   + DA++F
Sbjct: 138 RVRAISLNDAHNF 150


>gi|146276901|ref|YP_001167060.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|166225490|sp|A4WQU1|SYT_RHOS5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145555142|gb|ABP69755.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 646

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 14/185 (7%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    +   +R    + G  E+  P +    LW  SG +++Y +
Sbjct: 260 LQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRKAGYKEIRTPQVVDRKLWEASGHWEAYKE 319

Query: 92  EMLRLADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +    + A         P +      ++   +KSYR+LP    +     R E    
Sbjct: 320 NMFLVEVEEEHAKEKRINALKPMNCPCHVQVYNQGLKSYRDLPLRLAEFGSCHRYESSGS 379

Query: 147 F-GVMRSREFLMKDAYSF--DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-- 201
             G+MR R F+  DA+ F  +   EG   ++ ++  S   ++  LG  S  ++  + P  
Sbjct: 380 MHGLMRVRGFVQDDAHIFCTEDQIEGECAAFIELLSS---VYKDLGFDSFEIKLSTRPEV 436

Query: 202 -IGGD 205
            IG D
Sbjct: 437 RIGSD 441


>gi|158522069|ref|YP_001529939.1| prolyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|158510895|gb|ABW67862.1| prolyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 508

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F+   GK+      S+G+ + R++  +I    D  G+I
Sbjct: 235 KALQAGTSHFLGQNFARASKILFQSEQGKEELAWTTSWGV-STRLIGGLIMCHADDDGMI 293

Query: 340 WPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSK-------VGCDVFWDDMGEQIG 389
            P ++AP  + L+ I   D   +      + + ARL +       VG ++   D+G   G
Sbjct: 294 MPPAIAPAHVVLLPIFKKDSDRETVMAYTDTLAARLREKQYMGRPVGVEIDTRDIGGARG 353

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            ++      G PL+V +G K +    V +  R  G RE MS+
Sbjct: 354 WEWIKK---GIPLRVEIGPKDIEKQSVFVGRRDMGHREKMSV 392


>gi|52632425|gb|AAH10578.2| Threonyl-tRNA synthetase [Homo sapiens]
          Length = 723

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 164/418 (39%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
           +R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 453 IRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 508

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 509 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 545

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 546 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 594

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 595 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 648

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 649 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 705


>gi|328876049|gb|EGG24413.1| threonyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 786

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 4/138 (2%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H +S G   +LP G K  + + + +R E  R G  E+  P + S  LW  SG + +Y   
Sbjct: 392 HPYSPGSCFFLPHGAKVYNKLLSFLRGEYRRRGYQEVITPNIYSQKLWEVSGHWQNYKDN 451

Query: 93  MLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           M     D    ++   P +      ++   ++SY+ LP  +    +  R+E      G+ 
Sbjct: 452 MFSFQCDHTTYSL--KPMNCPGHCLMYAHRVRSYKELPMRYADFGVLHRNETHGSLTGLT 509

Query: 151 RSREFLMKDAYSFDLTPE 168
           R R F   DA+ F  T +
Sbjct: 510 RVRRFQQDDAHIFCRTDQ 527


>gi|302816173|ref|XP_002989766.1| hypothetical protein SELMODRAFT_447798 [Selaginella moellendorffii]
 gi|300142543|gb|EFJ09243.1| hypothetical protein SELMODRAFT_447798 [Selaginella moellendorffii]
          Length = 564

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 5/151 (3%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+L+ +   +   H+ S G   +LP G    + +   IR E  + G  E+  P 
Sbjct: 164 EAKKRDHRLLGKNQQLFFFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRGFDEVVTPN 223

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG    Y KE + + +   +     P +      +F+  ++SYR LP    
Sbjct: 224 IYNMKLWEQSGHAAHY-KENMFVFEIEKQEFGLKPMNCPGHCLLFQHRVRSYRELPLRIA 282

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              +  R+EL     G+ R R F   DA+ F
Sbjct: 283 DFGVLHRNELSGALTGLTRVRRFSQDDAHIF 313


>gi|302816171|ref|XP_002989765.1| hypothetical protein SELMODRAFT_130418 [Selaginella moellendorffii]
 gi|300142542|gb|EFJ09242.1| hypothetical protein SELMODRAFT_130418 [Selaginella moellendorffii]
          Length = 647

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 5/151 (3%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+L+ +   +   H+ S G   +LP G    + +   IR E  + G  E+  P 
Sbjct: 272 EAKKRDHRLLGKNQQLFFFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRGFDEVVTPN 331

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG    Y KE + + +   +     P +      +F+  ++SYR LP    
Sbjct: 332 IYNMKLWEQSGHAAHY-KENMFVFEIEKQEFGLKPMNCPGHCLLFQHRVRSYRELPLRIA 390

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              +  R+EL     G+ R R F   DA+ F
Sbjct: 391 DFGVLHRNELSGALTGLTRVRRFSQDDAHIF 421


>gi|119482073|ref|XP_001261065.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119409219|gb|EAW19168.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 652

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 186 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 245

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E ++     M   Y RI+  L
Sbjct: 246 HTAHLTEEAAREEVLHMLGLYARIYEEL 273


>gi|209526622|ref|ZP_03275147.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209492990|gb|EDZ93320.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 604

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q   G+  W P G      +   ++ EQ R G   +  P L   +L+  SG +  Y +++
Sbjct: 218 QVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVVTPHLGRVNLFKTSGHWQKYREDL 277

Query: 94  L-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              + +  D+  +    +      I++S ++SYR LP    +    +R E      G+ R
Sbjct: 278 FPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELPIRLAEFGTVYRYEQSGELGGLTR 337

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            R F   DA+ F +TPE     + K+      +  +L L
Sbjct: 338 VRGFTQDDAHLF-VTPEQLDDEFLKVVDLIQSVLKKLKL 375


>gi|207744373|ref|YP_002260765.1| prolyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206595778|emb|CAQ62705.1| probable prolyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 84

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R   ++++A L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R
Sbjct: 2   RAEADRLHAELAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGR 61


>gi|291571004|dbj|BAI93276.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 604

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q   G+  W P G      +   ++ EQ R G   +  P L   +L+  SG +  Y +++
Sbjct: 218 QVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVVTPHLGRVNLFKTSGHWQKYREDL 277

Query: 94  L-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              + +  D+  +    +      I++S ++SYR LP    +    +R E      G+ R
Sbjct: 278 FPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELPIRLAEFGTVYRYEQSGELGGLTR 337

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            R F   DA+ F +TPE     + K+      +  +L L
Sbjct: 338 VRGFTQDDAHLF-VTPEQLDDEFLKVVDLIQSVLKKLKL 375


>gi|226528192|ref|NP_001140354.1| hypothetical protein LOC100272402 [Zea mays]
 gi|194699134|gb|ACF83651.1| unknown [Zea mays]
          Length = 285

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++     TF+   G    V   S+     R +  ++ +  D KG
Sbjct: 20  TGRGIQGATSHCLGQNFAKMFDITFENEKGVREMVWQNSWAY-TTRSIGVMVMTHGDDKG 78

Query: 338 IIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
           ++ P  VAP ++ +I +   D      + ACE     L + G     D       G +++
Sbjct: 79  LVLPPKVAPIQVIVIPVPYKDADTTAIKGACESTVYTLDQSGIRADQDTRENYSPGWKYS 138

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             ++ G PL++ +G K +++ +V +  R  G + D+ +  ++
Sbjct: 139 HWEMKGVPLRIEIGPKDLANKQVRVVRRDNGAKVDIPVTNLV 180


>gi|324504606|gb|ADY41988.1| Bifunctional aminoacyl-tRNA synthetase [Ascaris suum]
          Length = 401

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 127/329 (38%), Gaps = 74/329 (22%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 9   PTSETVMYPSYAKWVQSHRDLPIRLNQWCNVVRWEFKHPTPFLRTREFLWQEGHTAFHTA 68

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + ++    ++   Y +I+    L +IP                +V     E + F   DF
Sbjct: 69  KEAETEVYQILDLYAQIY--TDLLAIP----------------VVKGRKSEKEKFAGGDF 110

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              + VE +                        V+ R I+    
Sbjct: 111 ------------------TTTVEAYVP----------------------VNGRSIQGATS 130

Query: 288 FYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            + G  +S     +F+  D G   Y    S+G+ + R + A+I    D  G++ P  VA 
Sbjct: 131 HHLGQNFSKMFDISFEEPDKGGKAYAWQNSWGL-STRTIGAMIMIHGDDNGLVLPPRVAA 189

Query: 347 FKISLINIKAHDQ---------VCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVA 395
            ++ ++ +    Q         +C+   E+I   L  VG      D+ +    G +F   
Sbjct: 190 IQMIVVPVGVTAQTSEEQRKMLICK--AEEITDLLVSVGIRAE-SDLRDNYSPGWKFNHW 246

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +L G P++V VG + V++++V    RL+G
Sbjct: 247 ELKGVPVRVEVGPRDVANNQVTCVIRLSG 275


>gi|224475774|ref|YP_002633380.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420381|emb|CAL27195.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 635

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 160/408 (39%), Gaps = 46/408 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           +++ G+  +   GQ     +  ++R+ Q      E+  P +    LW  SG +D Y   M
Sbjct: 254 EYAPGMPFYAHNGQVIRLELQNMLRQLQFEADYEEVYTPFIMDETLWKNSGHWDHYQDNM 313

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
               + +++     P +      I+++H+ SYR+LP    +     R EL     G+ R 
Sbjct: 314 Y-FTEVDEQTYALKPMNCPGHMLIYKNHLHSYRDLPIRMAEFGQVHRHELSGSLNGLFRV 372

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F       +       +  L + H++              G D S E   
Sbjct: 373 RTFNQDDAHIF-----VRRDQIESEILDVLGLIHKV----------YSVFGFDYSIELST 417

Query: 213 LAD--TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             D   GE +++      DF   S     +      ++ E+  A Y    D+H   + D+
Sbjct: 418 RPDDFMGEIELW------DFAEQSLENMLNQHGFKYTVNEKDGAFYGPKIDIH---IKDA 468

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAA 327
           L  + +     ++    F    K+ L    TF    G+      +    YG  + R +  
Sbjct: 469 LGRSHQCGTVQLD----FQMPEKFDL----TFINQAGEKERPVVIHRAIYG-SSDRFIGI 519

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E  H G  +  P  +AP ++ +I + A   +  DA + +  RL K G  V  D   E+
Sbjct: 520 LLE--HFGGNL--PLWLAPVQMEVILVNA--DLHLDAVKDLKRRLKKEGFRVELDLSDEK 573

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G +   A L   P  ++VG   V +  V ++ R       +++E+ +
Sbjct: 574 MGYKIRQAHLKKVPYTLVVGDNEVENGTVAVRKRGESEEHSINVEDFV 621


>gi|145251301|ref|XP_001397164.1| prolyl-tRNA synthetase YHR020W [Aspergillus niger CBS 513.88]
 gi|134082695|emb|CAK42588.1| unnamed protein product [Aspergillus niger]
          Length = 604

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 187 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 246

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT EG+      +   Y RI+  L
Sbjct: 247 HTAHLTKEGAHEEVMTILDLYARIYEEL 274


>gi|119631208|gb|EAX10803.1| threonyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 619

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 230 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 289

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 290 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 348

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 349 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 404

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 405 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 441

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 442 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 490

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 491 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 544

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 545 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 601


>gi|328953980|ref|YP_004371314.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454304|gb|AEB10133.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 640

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 160/411 (38%), Gaps = 61/411 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G +    +    R E  R G   +  PTL   DLW  SG +++Y + M    
Sbjct: 263 GLVIYHPKGARLRLVLEDFERREHLRRGYQIVMGPTLLKLDLWKRSGHFENYRENMYFT- 321

Query: 98  DRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM----R 151
               + + YG  P +      I++S I+SYR LP   +++    R E   R GV+    R
Sbjct: 322 --EIEGIDYGIKPMNCLAHMLIYKSSIRSYRELPLRLFELGTVHRHE---RSGVLHGLTR 376

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSH 208
            R+F   DA+     P+  +     +      +    G +    +  R E   IG D   
Sbjct: 377 VRQFTQDDAHIL-CRPDQVETEIAGVIDFVAEVMAVFGFEYEVELSTRPEKS-IGSDEDW 434

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E    A     Q             + N  F       +  E   A Y    D+   KL 
Sbjct: 435 ERATSALINALQ-------------TRNLPF-------ATCEGEGAFYGPKIDI---KLK 471

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAA 327
           D++  N+R     ++    F    ++ L    T+ G DG  H  V +    +G++     
Sbjct: 472 DAI--NRRWQCATVQCD--FTLPERFDL----TYIGPDGNPHRPVMLHRVILGSLERFLG 523

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           V+   + G   +W   +AP +  ++ +  +AH     D   ++ A   +V  D+      
Sbjct: 524 VLIEHYAGAFPVW---LAPVQAIILPVTDRAHP-FALDVARRLQAEELRVETDL----RN 575

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-EDMSLEEVI 435
           E++G +   A L   P  +I+G + V+   + ++ RL G   +D   EE +
Sbjct: 576 EKLGLKIREAQLQKIPYMIIIGDREVAAQTLSVR-RLDGTEIKDTPWEEFV 625


>gi|317057674|ref|YP_004106141.1| threonyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315449943|gb|ADU23507.1| threonyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 648

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 153/400 (38%), Gaps = 46/400 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+   LP G K +  +   I +E+ + G      P +   +L+  SG +D Y   M  
Sbjct: 261 GQGLPILLPKGAKVIQTLQRWIEDEEYKRGYQLTKTPFMSKRELYKISGHWDHYRDGMFI 320

Query: 96  LADRNDK---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           L D +D+        P        +F +  +SYR+LP    +    FR+E      G++R
Sbjct: 321 LGDPDDETKECFALRPMTCPFQYQVFLNRKRSYRDLPMRLGETSTLFRNEDSGEMHGLIR 380

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F + + +   L PE  +  +             +GL        S     + ++++ 
Sbjct: 381 VRQFTISEGHLI-LRPEQLEEEFKGCLDLAKYCLETIGLAEDVSYRFSQWDPANPNNKYE 439

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+  E      K  +D      +   D  I ++       A Y    D+  + +F   
Sbjct: 440 GTAEQWEEAQGAMKKILD------DIGLDYEIGIDE-----AAFYGPKLDIQIKNVFGK- 487

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK------DHYVQMGSYGIGAMRVV 325
            E+  ++ + I++     FG +Y           DGK       H   +G Y     R +
Sbjct: 488 -EDTLITIQ-IDMQIAKKFGMEYV--------DKDGKMKMPYIIHRTSVGCY----ERTL 533

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           A +IE  + G   +W   +AP ++ ++ IK  H+    D  E+    +  +G  V  D  
Sbjct: 534 ALLIE-KYAGVLPLW---LAPEQVRILPIKPEHNDYAYDLAEE----MRDLGMRVEVDAE 585

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + IG +   A     P   I+G   V D  V ++ R  G
Sbjct: 586 DDNIGPKIKQARFDRVPYMFIIGDNEVKDGTVTVRSRKEG 625


>gi|240103065|ref|YP_002959374.1| threonyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|259516771|sp|C5A5J8|SYT_THEGJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239910619|gb|ACS33510.1| Threonyl-tRNA synthetase (thrS) [Thermococcus gammatolerans EJ3]
          Length = 626

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 132/327 (40%), Gaps = 42/327 (12%)

Query: 117 IFRSHIKSYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           I +  I SYRNLP   Y++ +  FR E      G+ R R F M D ++     + +   +
Sbjct: 305 IKKDAIISYRNLPLRMYELTRYSFRREKSGELSGLRRLRAFTMPDMHTVAKDLKQAMDEF 364

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            K +   + +   +GL       +   +    +H+F             +KDF+      
Sbjct: 365 KKQYKLSMEVLRGVGLTP-----DDYEVAIRFTHDFWE----------ANKDFI------ 403

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              +   II    ++E W   +            D+L +   +S   I+V +   FG   
Sbjct: 404 --VELAKIIGKPVLIEMWDQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFGI-- 459

Query: 295 SLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSVAPFK 348
                 T+   +GK+ Y + +     GA+ RV+ A++E        GK  ++P  ++P +
Sbjct: 460 ------TYYDEEGKERYPLILHCSPSGAIERVMYAILEKQAKLQAQGKKPMFPLWLSPIQ 513

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +I +   D V  D    +  +L      V  DD  +++  +   A+    P  ++VG 
Sbjct: 514 VRVIPV--SDDVL-DYALYVAGKLEGAKIRVDVDDTNDRLNKKIRKAEKEWVPYIIVVGK 570

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVI 435
                + V ++ R  G + +M LE++I
Sbjct: 571 NEKEQNTVTVRRREDGKQVEMQLEDLI 597


>gi|154482657|ref|ZP_02025105.1| hypothetical protein EUBVEN_00330 [Eubacterium ventriosum ATCC
           27560]
 gi|149736433|gb|EDM52319.1| hypothetical protein EUBVEN_00330 [Eubacterium ventriosum ATCC
           27560]
          Length = 667

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P GQ+ +  +   I + E N  G +    P +  +DL+  SG +D Y   M  
Sbjct: 273 QGLPLLMPKGQRMIQKLQRWIEDLEDNEWGYVRTKTPLMAKSDLYKISGHWDHYKDGMFV 332

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      ++   P        ++++  KSYR+LP  + +    FR+E      G+ R 
Sbjct: 333 LGDEEKDKEVFALRPMTCPFQYYVYKASQKSYRDLPCRYGETSTLFRNEDSGEMHGLTRV 392

Query: 153 REFLMKDAY 161
           R+F + + +
Sbjct: 393 RQFTISEGH 401



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEK 367
           H   +G Y     R +A +IE  + GK   W  P+ V    IS   ++  D        K
Sbjct: 532 HRTSIGCYE----RTLAWLIEK-YAGKFPTWLCPEQVRVLPISDKYVEYAD--------K 578

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L K G DV  D   E+IG +   A L   P  ++VG +  +D  V ++ R  G   
Sbjct: 579 VAAELKKNGIDVTVDSRSEKIGYKIREARLDKLPYMLVVGQQEEADETVSVRSRFAGDEG 638

Query: 428 DMSLEEVI 435
              L+E I
Sbjct: 639 VKPLDEFI 646


>gi|50364993|ref|YP_053418.1| threonyl-tRNA synthetase [Mesoplasma florum L1]
 gi|50363549|gb|AAT75534.1| threonyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 8/149 (5%)

Query: 23  HKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           H+++ +T    G  H    G+  W+P G    + +   ++E++     I ++ P + + +
Sbjct: 242 HRIINKTLKIFGFDHLVGPGLPLWMPNGTIVKEEIKKYLKEKEWEYDYINVTTPVIGTVE 301

Query: 79  LWVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           L+ +SG +D YG++M +       +D+  I  P +      +++   +SYR+LP    + 
Sbjct: 302 LYKKSGHWDHYGEDMFQPFNGGSGSDEQFILRPMNCPHHVAVYKQEQRSYRDLPLRIAEH 361

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            L+ R E      G+ R R   + D++ F
Sbjct: 362 ALQHRYESSGSLTGLERVRAMELTDSHIF 390


>gi|315635477|ref|ZP_07890743.1| threonine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315480235|gb|EFU70902.1| threonine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 602

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 168/405 (41%), Gaps = 47/405 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +     G   +  P +  A++W  SG Y +Y KE +   
Sbjct: 228 GLPMWLPKGARLRSKLEHLLYKAHRIRGYEPVRGPEILKAEMWKISGHYANY-KENMYFT 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +D+     P +      IF++++ SY+ LP   ++  +  R E+     G+ R REF 
Sbjct: 287 TIDDQEYGIKPMNCVGHIQIFKNNLVSYKELPKKLFEYGVVHRHEMSGAMHGLFRVREFT 346

Query: 157 MKDAYSFDLTPEGSKHSYNKM-FV-SYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFI 211
             D++ F    +  +  +  + FV + L++F   + + + + P +A    IG D+  E  
Sbjct: 347 QDDSHIFCTQDQIKQVIFEVLEFVDTLLKVFDFKYEIEVSTKPEKA----IGDDIFWE-- 400

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                       +K  MD  +   N  +        I E   A Y    D+   K+ D++
Sbjct: 401 ----------KTTKGIMD-ALDENNISY-------GIDEGGGAFYGPKIDI---KILDAI 439

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
               +     +++     F  +Y        KG   K+  V +    +G+      ++  
Sbjct: 440 GRKWQCGTVQVDMNLPSRFNVEY-----INEKGE--KEQPVMIHRAILGSFERFIGILTE 492

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              G+   +P  +AP ++  + I A   V  +  +++   L +   D    +M E +  +
Sbjct: 493 HCAGE---FPFIIAPTQVIFVPI-ADSHV--EYAKELQKALLENDLDSEIYNMNESLNKR 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +A+    P+ V++G + V +  V +++R T  + +MS  E I+
Sbjct: 547 IRMAEKQRVPMIVVIGDEEVENKTVALRNRRTREQSNMSKNEFIS 591


>gi|78188687|ref|YP_379025.1| prolyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|114152180|sp|Q3ASP3|SYP_CHLCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78170886|gb|ABB27982.1| prolyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 18/186 (9%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G     G  ++      F+  +    YV   S+G+ + R++ A+I +  D +G++
Sbjct: 220 KALQAGTSHDLGQNFAKAFDCKFQTHEKTLEYVWATSWGV-STRLIGALIMAHSDDRGLV 278

Query: 340 WPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADL 397
            P  +A  ++ +I I K   +      + I A L+K G   F D   +   G +FA  +L
Sbjct: 279 LPPRLATRQVVIIPILKGDKESVLHHADNIAAALTKAGISAFVDSSEQNSPGWKFAEYEL 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--------MSLEEVIN-------YASHRF 442
            G PL++ +G + + +    +  R T  + +        MS+ E++N        A+ RF
Sbjct: 339 QGIPLRLELGPRDIKNGMCVVARRDTLEKTEIALDDRLVMSINEILNDIQQDMFDAALRF 398

Query: 443 SNNRPV 448
              R V
Sbjct: 399 RQERTV 404



 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATH 166

Query: 168 EGSKHSYNKMFVSY 181
           E ++    +M   Y
Sbjct: 167 EEAQEEVLRMINVY 180


>gi|225026720|ref|ZP_03715912.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
 gi|224955955|gb|EEG37164.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
          Length = 650

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   LP G K +  +   I + E N  G +    P +  +DL+  SG +D Y + M  
Sbjct: 259 QGLPLLLPKGAKIIQTLQRWIEDLEDNEWGYVRTKTPLMAKSDLYKISGHWDHYKEGMFV 318

Query: 96  LAD-RNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D  NDK ++   P         +++  KSYR+LP+   +    FR+E      G+ R 
Sbjct: 319 LGDEENDKEVLALRPMTCPFQYYCYKNTQKSYRDLPYRMSETSTLFRNEDSGEMHGLTRV 378

Query: 153 REFLMKDAY 161
           R+F + + +
Sbjct: 379 RQFTISEGH 387


>gi|189055088|dbj|BAG38072.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 322 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 381

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 382 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 440

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 441 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRAVYSVFGFSFKLNLSTRPEKFLGD-- 496

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 497 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 533

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 534 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 582

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 583 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 636

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 637 DIDLDP-GCTLNKKIRNAQLAQYNFTLVVGEKEKISGTVNIRTRDNKVHGERTISETI 693


>gi|31544425|ref|NP_853003.1| prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|81834139|sp|Q7NBP5|SYP_MYCGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|31541270|gb|AAP56571.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930481|gb|ADC30420.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 474

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWV 81
           +++ +  +IH  + KG  S+LP G K    +   + +E ++   +E+ +P+L S  D  +
Sbjct: 21  EVISKGNLIHYSNIKGFMSFLPNGWKIWQLIKKELTKEFDQRDILELCLPSLISQNDFLL 80

Query: 82  ESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           E    + +  E+  +   +++    I  PT E    +++R  +++YR LP    Q    F
Sbjct: 81  EKKHLEGFAPELFIVTKTSNETEKYILRPTSEIAFCNLWRETLRNYRQLPIKHNQWTSVF 140

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--GLKSIPMRA 197
           R E   R   +R+ EF   + +S   T E S    N   V   +++ R    +  IP+ A
Sbjct: 141 RVEKNTR-PFLRNSEFFWHEIHSCFETEEQS----NDFAVDIWKLYQRFIKDILCIPLVA 195


>gi|289523104|ref|ZP_06439958.1| threonine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503647|gb|EFD24811.1| threonine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 624

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G   L+ +    R+   + G  E+  P +   DLW+ SG +D Y +E +   + + K 
Sbjct: 254 PKGVVVLNVLVDFWRKVHVQRGYQEIKTPLILDQDLWIRSGHWDHY-RENMYFTEIDGKP 312

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      +++S ++SYR+ P    ++ +  R E      G+MR R F   DA+ 
Sbjct: 313 FAIKPMNCPGGILVYKSQLRSYRDFPLKLAELGVVHRHERSGVLHGLMRVRCFTQDDAHI 372

Query: 163 F 163
           F
Sbjct: 373 F 373


>gi|294954482|ref|XP_002788190.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|294954484|ref|XP_002788191.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239903405|gb|EER19986.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239903406|gb|EER19987.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 720

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 13/160 (8%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R ++     + GT ++      F+  DG+  + +  S+G    R +  +I    D K
Sbjct: 426 CNGRAVQGATSHFLGTHFAKMFGIEFEDRDGEKKFAEQTSWGF-TTRSIGVMIMEHGDDK 484

Query: 337 GIIWPDSVAPFKISLINIKAH-----------DQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  ++ ++ I               ++  + C+ IY  L   G  V  DD  
Sbjct: 485 GLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKEMIGEKCKSIYEDLKANGVRVVLDDRE 544

Query: 386 EQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           ++  G +F   +L G PL++ VG+K +    V    R +G
Sbjct: 545 DKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNSG 584


>gi|313127085|ref|YP_004037355.1| prolyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312293450|gb|ADQ67910.1| prolyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 488

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GT ++     T+   D +       S+G+ + R + A+I +  D +G++ P +VAP ++
Sbjct: 238 LGTSFAEAFDLTYTDEDEESQVAHTTSWGL-SWRALGALIMTHSDDQGLVLPHTVAPEQV 296

Query: 350 SLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIV 406
            ++ I   D  +   +  E I   L   G  V  DD  E+  G +F   +L G P++  +
Sbjct: 297 VIVPIWQADTQEKVLEYAESISEELEDAGIRVELDDRDERNPGFKFNEWELKGVPVRFEI 356

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G   V D  V + HR  G  ++++ E++       F
Sbjct: 357 GPNEVDDDVVTVVHRPDGETKEVAREDIAETVREEF 392


>gi|152978995|ref|YP_001344624.1| threonyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171704313|sp|A6VNZ2|SYT_ACTSZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150840718|gb|ABR74689.1| threonyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 643

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 143/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTVFRELETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G   I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYGTFGFTDIAVKLSTRPEKRIGAD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+ G        + +++ I      F                Y    +      
Sbjct: 432 -EMWDRAEQGLANAL-KHNALEYEIQEGEGAF----------------YGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D          R  + G I      ++LP  ++A++   D       M    I G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLNASYVAEDNDRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        +  +K+  +LS  G  V  D  
Sbjct: 521 FIGIITEEYAG---FFPAWLAPVQAVVMNITDSQA---EYVQKVVKQLSDAGLRVKADLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E++G +     L   P  ++ G K +++ KV ++ R
Sbjct: 575 NEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTR 611


>gi|325967867|ref|YP_004244059.1| glycyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323707070|gb|ADY00557.1| glycyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 591

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)

Query: 320 GAMRVVAAVIESSH---DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           G  R+V   +E ++   +GK ++  P  +AP K++++ I    +        I+  LS V
Sbjct: 446 GVDRIVYVTLEHAYTEVNGKPLLRLPPDIAPIKVAVLPIIKKQEYV-SIGRNIFRELSMV 504

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G    +DD G  IGS++A  D +G P  + +  K   DS V I+ R T  +  +S+ ++I
Sbjct: 505 GVKAVYDDDG-AIGSRYAKYDSVGVPFAITIDDKTPIDSTVTIRDRDTKAQIRVSMNDII 563

Query: 436 N 436
            
Sbjct: 564 K 564


>gi|284052870|ref|ZP_06383080.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 508

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q   G+  W P G      +   ++ EQ R G   +  P L   +L+  SG +  Y +++
Sbjct: 218 QVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVVTPHLGRVNLFKTSGHWQKYREDL 277

Query: 94  L-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              + +  D+  +    +      I++S ++SYR LP    +    +R E      G+ R
Sbjct: 278 FPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELPIRLAEFGTVYRYEQSGELGGLTR 337

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            R F   DA+ F +TPE     + K+      +  +L L
Sbjct: 338 VRGFTQDDAHLF-VTPEQLDDEFLKVVDLIQSVLKKLKL 375


>gi|146319436|ref|YP_001199148.1| seryl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145690242|gb|ABP90748.1| Seryl-tRNA synthetase [Streptococcus suis 05ZYH33]
          Length = 428

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +R+ I  
Sbjct: 232 GYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYYRNEILE 288

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++LP  F  +   FR E     R   G++R  +F   +   F  TPE S     KM  +
Sbjct: 289 EKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-ATPEQSYDELEKMTAN 347

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              I  +LGL    +   +G +G
Sbjct: 348 AENILQKLGLPYRVLALCTGDMG 370


>gi|323342132|ref|ZP_08082365.1| threonine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464557|gb|EFY09750.1| threonine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 596

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 153/405 (37%), Gaps = 57/405 (14%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L   M+ +   G   WLP G      ++        + G +    PT+ + +LW  SG +
Sbjct: 204 LELFMMSEFGPGFPFWLPNGMTLRHALDEYYYNAHIKRGYVFTQTPTMLNKELWEVSGHW 263

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           ++Y +E +  +  +D+     P +      ++++ + SYR+LP    ++    R E    
Sbjct: 264 ENY-RENMYTSTIDDREFAIKPMNCPGGMLVYKNGLHSYRDLPIRLAEMGHVHRHEASGA 322

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPI 202
             G+ R R F   DA+ F +  +  +    ++      I+   GL     +  R E   I
Sbjct: 323 LNGLFRVRSFTQDDAHLF-MREDQLQDEIVEILDFINEIYSTFGLSYSIELSTRPEDKYI 381

Query: 203 GGDLSHEFIVLADTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           G       I + D  E  +   C    +DF I   +  F                Y    
Sbjct: 382 GD------IDVWDRSEQALKEACMAAGVDFKINEGDGAF----------------YGPKL 419

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG 318
           D    K+ DSL    RV   G             +LP     T+   DGK     M    
Sbjct: 420 DF---KVRDSL---NRVWQCGT-------VQLDMNLPERFDLTYVAEDGKKKRPIMLHRA 466

Query: 319 I-GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSK 374
           I G++ R +  +IE    G    +P  +AP +I +I  N + H     + C+ +  +   
Sbjct: 467 IFGSIERFIGILIEHFAGG----FPLWMAPKQIEIIPVNTEFHMDYANEVCDLLLEK--- 519

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            G     D   E++G +   A     PLQ+I+G + + D  V ++
Sbjct: 520 -GIRAHVDGRNEKLGYRLREAQKNKIPLQLIIGDQEIEDRSVNVR 563


>gi|146420108|ref|XP_001486012.1| hypothetical protein PGUG_01683 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146389427|gb|EDK37585.1| hypothetical protein PGUG_01683 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 719

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             ++ S G   WLP G +  + +  ++R E  +    E+  P + ++ LW  SG + +Y 
Sbjct: 326 FFNEMSPGSAFWLPHGTRIYNRLVDLMRSEYIQRDFQEVITPNMYNSKLWETSGHWGNYK 385

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    D    +    P +      IF+S  +SYR LP+      +  R+E      G+
Sbjct: 386 ENMFTF-DVEKDSFGLKPMNCPGHCLIFKSRERSYRELPWRVADFGVIHRNEFSGALSGL 444

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 445 TRVRRFQQDDAHIF 458


>gi|146321639|ref|YP_001201350.1| hypothetical protein SSU98_1792 [Streptococcus suis 98HAH33]
 gi|145692445|gb|ABP92950.1| SerS [Streptococcus suis 98HAH33]
 gi|292559062|gb|ADE32063.1| SerS [Streptococcus suis GZ1]
          Length = 467

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +R+ I  
Sbjct: 232 GYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYYRNEILE 288

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++LP  F  +   FR E     R   G++R  +F   +   F  TPE S     KM  +
Sbjct: 289 EKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-ATPEQSYDELEKMTAN 347

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              I  +LGL    +   +G +G
Sbjct: 348 AENILQKLGLPYRVLALCTGDMG 370


>gi|302386675|ref|YP_003822497.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197303|gb|ADL04874.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 653

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K +  +   I +E+ + G +    P +   DL++ S  +D Y + M  L
Sbjct: 259 QGLPLLMPKGAKIVQTLQRWIEDEEEKRGYMRTKTPLMAKKDLYIISDHWDHYKEGMFVL 318

Query: 97  ADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            +   +D+     P        +++   KSYR+LP  + +    FR+E      G+ R R
Sbjct: 319 GNEETDDEVFALRPMTCPFQYYVYKQSQKSYRDLPCRYGETSTLFRNEDSGEMHGLTRVR 378

Query: 154 EFLMKDAY 161
           +F + + +
Sbjct: 379 QFTISEGH 386


>gi|222480176|ref|YP_002566413.1| threonyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453078|gb|ACM57343.1| threonyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 649

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+  L  ++    E     G  E+  P +   +LW +SG Y++Y  +M  L 
Sbjct: 267 GLPLYHPPGKTVLRELSNFANELNRENGYEEVETPHVFRTELWKKSGHYENYKDDMF-LL 325

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF     SYR+LP  +++    +R E R    G+ R   F 
Sbjct: 326 DVNDEEYGLKPMNCPGHATIFDQQSWSYRDLPQRYFENGKVYRKEQRGELSGLSRVWSFT 385

Query: 157 MKDAYSF 163
           + D + F
Sbjct: 386 IDDGHLF 392


>gi|37522455|ref|NP_925832.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|73919794|sp|Q7NCU0|SYT_GLOVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|35213456|dbj|BAC90827.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 627

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/423 (21%), Positives = 160/423 (37%), Gaps = 52/423 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  W P G      +   +R+EQ + G  ++  P +   DL+  SG +  Y  +M  L 
Sbjct: 241 GLPLWTPKGALLRYILEEFLRKEQVKRGYQQVVTPHIARVDLFKTSGHWFKYKDDMFPLM 300

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
                +  ++  +  P +      I++S + SYR LP    +    +R E      G+ R
Sbjct: 301 ATSEEEGAEEGFVMKPMNCPFHIQIYKSELHSYRELPIRLAEFGTVYRYEQSGELGGLTR 360

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-----KSIPMRAESGP--IGG 204
            R F + D++ F +TPE     + K+      +F  L L       +  R  +    IG 
Sbjct: 361 VRGFTVDDSHLF-VTPEQLDDEFKKVVDLIQFVFRSLQLGDGFSARLSFRDPTSDKYIGS 419

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D + E    A    +Q    K F+     +      D I  +++  +W         +  
Sbjct: 420 DAAWEKAQAAILKASQDLGLKYFVAEGEAAFYGPKLDFIFRDALGREWQLGTVQVDYI-- 477

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 LPE         E+ ++   G++    M           H    GS      R 
Sbjct: 478 ------LPER-------FELEYVAEDGSRRRPVMI----------HRAPFGSL----ERF 510

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A +IE    G   +W   +AP ++ ++ +   DQ    A E +  RL  +      D  
Sbjct: 511 IAILIE-HFAGDFPLW---LAPEQVRILPVT--DQFVGYA-ESVKDRLVSLEMRAEVDAS 563

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL--EEVINYASHRF 442
            E++G +    +    P+ ++VG    +   V ++ R+ G ++  +L  EE I Y   R 
Sbjct: 564 SERLGKKIRNGETAKVPVLLVVGESEANSGTVAVRTRVEGEKDKGTLPVEEAIAYLQERL 623

Query: 443 SNN 445
           +  
Sbjct: 624 AKR 626


>gi|284931606|gb|ADC31544.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 474

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWV 81
           +++ +  +IH  + KG  S+LP G K    +   + +E ++   +E+ +P+L S  D  +
Sbjct: 21  EVISKGNLIHYSNIKGFMSFLPNGWKIWQLIKKELTKEFDQRDILELCLPSLISQNDFLL 80

Query: 82  ESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           E    + +  E+  +   +++    I  PT E    +++R  +++YR LP    Q    F
Sbjct: 81  EKKHLEGFAPELFIVTKTSNETEKYILRPTSEIAFCNLWRETLRNYRQLPIKHNQWTSVF 140

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--GLKSIPMRA 197
           R E   R   +R+ EF   + +S   T E S    N   V   +++ R    +  IP+ A
Sbjct: 141 RVEKNTR-PFLRNSEFFWHEIHSCFETEEQS----NDFAVDIWKLYQRFIKDILCIPLVA 195


>gi|114600754|ref|XP_001153291.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 1 [Pan
           troglodytes]
          Length = 619

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 230 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 289

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 290 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 348

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 349 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 404

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 405 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 441

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 442 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 490

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 491 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 544

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 545 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 601


>gi|297620635|ref|YP_003708772.1| Prolyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375936|gb|ADI37766.1| Prolyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 507

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D F   ++SYR+LP    Q     R E+RPR   +R+ EFL ++ 
Sbjct: 117 EEPLIVRPTSETIIGDSFSRWVESYRDLPLLINQWANVVRWEMRPRI-FLRTSEFLWQEG 175

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + +K    KM   Y
Sbjct: 176 HTVHATKQEAKEETLKMLEVY 196


>gi|253752458|ref|YP_003025599.1| seryl-tRNA synthetase [Streptococcus suis SC84]
 gi|253754284|ref|YP_003027425.1| seryl-tRNA synthetase [Streptococcus suis P1/7]
 gi|56684577|gb|AAW21989.1| SerS [Streptococcus suis]
 gi|251816747|emb|CAZ52389.1| seryl-tRNA synthetase [Streptococcus suis SC84]
 gi|251820530|emb|CAR47285.1| seryl-tRNA synthetase [Streptococcus suis P1/7]
 gi|319758862|gb|ADV70804.1| hypothetical protein SSUJS14_1746 [Streptococcus suis JS14]
          Length = 424

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +R+ I  
Sbjct: 189 GYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYYRNEILE 245

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++LP  F  +   FR E     R   G++R  +F   +   F  TPE S     KM  +
Sbjct: 246 EKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-ATPEQSYDELEKMTAN 304

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              I  +LGL    +   +G +G
Sbjct: 305 AENILQKLGLPYRVLALCTGDMG 327


>gi|13471046|ref|NP_102615.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|22654133|sp|Q98LR2|SYT_RHILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14021790|dbj|BAB48401.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 658

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G K   N+   +R   +  G  E++ P +    LW  SG +  Y   
Sbjct: 260 QEEGPGVVFWHAKGWKMFQNLVNYMRRRLDEQGYQEVNAPQVLDKSLWETSGHWGWYRDA 319

Query: 93  MLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M ++        +D+     P +      IF+  +KSYR+LP    +     R E     
Sbjct: 320 MFKVTVAGDDTDDDRVFALKPMNCPGHVQIFKHGLKSYRDLPVKLAEFGNVHRYEPSGAL 379

Query: 148 -GVMRSREFLMKDAYSF 163
            G+MR R F   DA+ F
Sbjct: 380 HGLMRVRGFTQDDAHIF 396


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040681|gb|ACT57477.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I +   G+  W   G K    + + +R  + +    E++ P +    LW +SG +DSY  
Sbjct: 258 IAEDGSGVIFWHRKGWKIFQTLISYMRR-KIKDDYEEINTPQVLDQHLWQQSGHWDSYRA 316

Query: 92  EMLRLADRND-----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +   +D     +     P +      +F   +KSYR LP    +    +R+E    
Sbjct: 317 NMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGS 376

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---I 202
             G+MR R F   DA+ F  T E   +   K+    + I+   G + I ++  + P   +
Sbjct: 377 LHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRV 435

Query: 203 GGD 205
           G D
Sbjct: 436 GSD 438


>gi|85093975|ref|XP_959801.1| threonyl-tRNA synthetase [Neurospora crassa OR74A]
 gi|28921255|gb|EAA30565.1| threonyl-tRNA synthetase [Neurospora crassa OR74A]
          Length = 788

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 17/165 (10%)

Query: 15  PRDAEIASHKLMLRTGMIHQH---------------SKGIYSWLPLGQKALDNVNAIIRE 59
           P   ++A+HK  L       H               S G   WLP G +  + +   I+E
Sbjct: 302 PDKKQMAAHKKFLEEAAKRDHRLIGKQQELFYFEECSPGSAMWLPHGMRINNAIMEYIKE 361

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  E+  P + +  LW +SG    Y  +M  L D + +     P +      +FR
Sbjct: 362 EYWKRGYDEVMTPNMFNVALWEQSGHLAHYKDDMFIL-DVDKEQFGLKPMNCPAHAMMFR 420

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              +S++ LP       +  R+E      G+ R R F   DA+ F
Sbjct: 421 HRDRSHKELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF 465


>gi|288940715|ref|YP_003442955.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896087|gb|ADC61923.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 639

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  W   G+         +RE+ +  G  E+  P +    LW  SG +D +   M  
Sbjct: 262 APGMAFWHAKGRVVYRLAETYMREKLDEYGYQEVETPQVLDRSLWERSGHWDKFAGGMF- 320

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               +D+     P +      ++   +KSYR+LP    +  +  R+E      G+MR+R 
Sbjct: 321 TTHLDDRDFAIKPMNCPGHIQLYNQGLKSYRDLPLRLAEFGVVHRNEPSGTLHGLMRARR 380

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 381 FTQDDAHVF 389


>gi|260947818|ref|XP_002618206.1| hypothetical protein CLUG_01665 [Clavispora lusitaniae ATCC 42720]
 gi|238848078|gb|EEQ37542.1| hypothetical protein CLUG_01665 [Clavispora lusitaniae ATCC 42720]
          Length = 686

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 126/332 (37%), Gaps = 64/332 (19%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 282 DEHIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKHPQPFLRTREFLWQEG 341

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT EG+     ++   Y  ++    L ++P                +V       +
Sbjct: 342 HTAHLTKEGAATEVEQILDLYRGVYEE--LLAVP----------------VVKGRKTANE 383

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   D+         T    I +    ++  T+ +  T   +  K+F+   EN      
Sbjct: 384 KFAGADYT-------TTCEGFIAATGRGIQGATSHHLGT---NFSKMFNISVEN----PE 429

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G E   +F F   + L                        + RV+  +I +  D KG++ 
Sbjct: 430 GPEKERVFAFQNSWGL------------------------STRVIGVMIMTHSDNKGLVL 465

Query: 341 PDSVAPFKISLINIKAHDQVC---RDA----CEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           P  VA  ++ ++ +    +     RDA     +K+   L+  G  V  D       G +F
Sbjct: 466 PPRVAQNQVVVVPVGLTSKSTPEQRDAVNGGAKKVEDALADAGLRVVGDYRNNYSPGWKF 525

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           A  +L G PL+V  G K ++  +V    R  G
Sbjct: 526 ADWELKGVPLRVEFGPKDLAAGQVTAVRRDNG 557


>gi|224099691|ref|XP_002311580.1| predicted protein [Populus trichocarpa]
 gi|222851400|gb|EEE88947.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G + +LP G +  + +   I++E  + G  E+  P + +  LW  SG   +Y 
Sbjct: 297 FCHPLSPGSWFFLPHGTRVYNKLMQFIKDEYRKRGYEEVKSPNIFNMKLWETSGHAANYK 356

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M  L   N +  +  P +      +F+  ++SYR LP          R+E      G+
Sbjct: 357 ENMFLLEIENQEFGL-KPMNCPGHCLMFQHRVRSYRELPLRLADFGALHRNEASGALTGL 415

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 416 TRVRRFQQDDAHIF 429


>gi|86151198|ref|ZP_01069413.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841545|gb|EAQ58792.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 602

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/448 (20%), Positives = 175/448 (39%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV +
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDN 372

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +++F                   D S+E  +   T   +     +  +    +     D
Sbjct: 373 LMKLF-------------------DFSYEMEI--STKPEKAIGDDEIWEIATKALKEALD 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+   K+ D+L        R  + G I      ++LP   
Sbjct: 412 EQGLKYGIDEGGGAFYGPKIDI---KITDAL-------KRKWQCGTI---QVDFNLPSCF 458

Query: 301 TFKGADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
             +  D    K   V +    +G+      ++     G+   +P  +AP  + ++ I +A
Sbjct: 459 KLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPTAVGIVPIGEA 515

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H    ++    I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V
Sbjct: 516 HIAYAKE----IQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSV 571

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R    ++++SL+E I     + S 
Sbjct: 572 ALRDRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|302818920|ref|XP_002991132.1| hypothetical protein SELMODRAFT_132981 [Selaginella moellendorffii]
 gi|300141063|gb|EFJ07778.1| hypothetical protein SELMODRAFT_132981 [Selaginella moellendorffii]
          Length = 528

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++ G     G  ++      F   +G   ++   S+G+ + R+V  +I +  D KG++
Sbjct: 267 RALQAGTSHNLGQNFARAFETQFTDVNGDLQHIWQTSWGM-STRMVGGIIMTHGDDKGLM 325

Query: 340 WPDSVAPFKISLINI--KAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVA 395
            P  +AP ++ ++ I  K  +Q     A  K+ + +   G  V  D   ++  G +F   
Sbjct: 326 LPPKLAPIQVVIVPIWKKGDEQESVLQAAHKVESLVRAAGIRVKLDTFDQRTPGWKFNHW 385

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +L G P+++ +G K V+++ V +  R
Sbjct: 386 ELKGVPIRIEIGPKDVANNSVVVARR 411


>gi|296194829|ref|XP_002745122.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic [Callithrix
           jacchus]
          Length = 723

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 165/417 (39%), Gaps = 59/417 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 335 FHELSPGSCFFLPKGAYIYNALIDFIRSEYRKRGFQEVVTPNIYNSRLWMTSGHWQHYSE 394

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       ++  +  P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 395 NMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLT 453

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR+ + +   S  +   + P    GD   
Sbjct: 454 RVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRMVYSVFGFSFKLNLSTRPEKFLGD--- 508

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 509 --IEVWNQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKIDI 546

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    TF   DG D    V +    +G
Sbjct: 547 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TFVSHDGDDKKRPVIVHRAILG 595

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCD 378
           ++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D
Sbjct: 596 SVERMIAILTENYGGK---WPFWLSPRQVMVVPVGPS---CDEYAQKVRQQFHAAKFMAD 649

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           V  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E +
Sbjct: 650 VDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTVSETV 705


>gi|253756218|ref|YP_003029358.1| seryl-tRNA synthetase [Streptococcus suis BM407]
 gi|251818682|emb|CAZ56517.1| seryl-tRNA synthetase [Streptococcus suis BM407]
          Length = 424

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +R+ I  
Sbjct: 189 GYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYYRNEILE 245

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++LP  F  +   FR E     R   G++R  +F   +   F  TPE S     KM  +
Sbjct: 246 EKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-ATPEQSYDELEKMTAN 304

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              I  +LGL    +   +G +G
Sbjct: 305 AENILQKLGLPYRVLALCTGDMG 327


>gi|108757584|ref|YP_630572.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|108461464|gb|ABF86649.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 400

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R+   R G  E+  P L +  LW  SG +D++ +
Sbjct: 19  LQEEAPGMVFWHPRGLVLYRLLEEHVRQRMRREGYQEVRTPQLYAQPLWERSGHWDNFRE 78

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  L +   + +   P       ++ +    SYR+LP    +  L  R E      G+ 
Sbjct: 79  NMF-LVEDGARHLGVKPVSCPGHIELVQRMAPSYRDLPLRLGEFGLVHRAEPGGALHGLF 137

Query: 151 RSREFLMKDAYSFDLTPE 168
           R R+F   D + F   P+
Sbjct: 138 RLRQFTQDDGHIFCAEPQ 155



 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G++     V+   H G    W   +AP ++ + ++    +   D  E+  A+L + GC 
Sbjct: 278 LGSLERFIGVMLEHHGGALPPW---LAPQQVVVASV---GEGAADYAERFAAKLQEAGCR 331

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D  GE +  +   A   G P  V+ G++ V+   V ++ R  G + D+  E+    A
Sbjct: 332 ASVDRRGESLSRKVLDAHAAGVPWLVVAGAREVAAGNVRLRQR-DGAQRDVPWEDA---A 387

Query: 439 SHRFSNNRPV 448
           +   ++ RP 
Sbjct: 388 AELVASCRPA 397


>gi|320583490|gb|EFW97703.1| Mitochondrial threonyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 427

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI   S G   +LP G +  + +   ++ +Q + G  E+  P +   DLW  SG +D+Y 
Sbjct: 27  MIDASSPGSVFFLPHGTRIFNRLVQFMKIQQEKHGFTEVISPLMYKKDLWETSGHWDNYA 86

Query: 91  KEMLRL---ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++M R+   +  N    +YG  P +      IF    +S+  LP          R+E   
Sbjct: 87  EDMFRVESNSSSNKLEAVYGLKPMNCPGHCVIFGRFARSHHELPIRLSDWSSLHRNEPSG 146

Query: 146 RF-GVMRSREFLMKDAYSF 163
              G+ R R F   D + F
Sbjct: 147 ALTGLTRVRRFHQDDGHIF 165


>gi|238618767|ref|YP_002913592.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259516721|sp|C4KKV9|SYT_SULIK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238379836|gb|ACR40924.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 545

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 13/182 (7%)

Query: 18  AEIASHKLM---LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           AE   H+L+   L     H+ +  G+  + P GQ   + + A +RE  +  G  E+    
Sbjct: 135 AEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSH 194

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFT 131
           +   D+W  SG Y  Y  +++      D+   YG  P +      I++S  ++YR+LP  
Sbjct: 195 VFKTDIWKISGHYTLYRDKLIVFNMEGDE---YGVKPMNCPAHILIYKSKPRTYRDLPIR 251

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS-YLRIFHRLG 189
           F +    +R E +   +G++R R F+  D + F    E       KM +S  + ++H+ G
Sbjct: 252 FSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF--LREDQLMEEIKMLISKTVEVWHKFG 309

Query: 190 LK 191
            K
Sbjct: 310 FK 311


>gi|269468339|gb|EEZ80013.1| threonyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 630

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 14/180 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H KG   W  L Q     + ++ R+   +    E+  P L    LW +SG +D +
Sbjct: 261 GMVFWHEKG---W-TLYQIVEQYMRSVFRDNDYK----EVHTPQLIDRTLWEKSGHWDKF 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           G  M   +  N    +  P +      I+   +KSYR+LP    +     R+E      G
Sbjct: 313 GDAMFTTSSENRDYAV-KPMNCPAHIQIYNQGLKSYRDLPLRLAEFGSCHRNEPSGTLHG 371

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F+  D + F  T    +   +        ++   G +++ ++  + P   +G D
Sbjct: 372 IMRVRNFVQDDGHIF-CTENQIQDEVSTFIDLTFDVYKNFGFENVDIKLSTRPEKRVGSD 430


>gi|223934048|ref|ZP_03626000.1| seryl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897275|gb|EEF63684.1| seryl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 424

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +R+ I  
Sbjct: 189 GYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYYRNEILE 245

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++LP  F  +   FR E     R   G++R  +F   +   F  TPE S     KM  +
Sbjct: 246 EKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-ATPEQSYDELEKMTAN 304

Query: 181 YLRIFHRLGL 190
              I  +LGL
Sbjct: 305 AENILQKLGL 314


>gi|167536887|ref|XP_001750114.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771443|gb|EDQ85110.1| predicted protein [Monosiga brevicollis MX1]
          Length = 550

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G +    +  +IRE+  + G  E+  P + + +LW  SG +  Y 
Sbjct: 206 FFHDLSPGSCFFLPRGARIYRTLMEMIREQYIKRGFSEVVTPNIFNKNLWETSGHWQHYQ 265

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + +    +   +     P +      +F    +SYR LP  F    +  R+EL     G+
Sbjct: 266 ENIFSF-EVEKEIFAMKPMNCPSHCIMFGHRKRSYRELPLRFADFGVLHRNELSGALTGL 324

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 325 TRVRRFQQDDAHIF 338


>gi|212223522|ref|YP_002306758.1| threonyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|229558459|sp|B6YTH4|SYT_THEON RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212008479|gb|ACJ15861.1| Threonyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 627

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 133/331 (40%), Gaps = 50/331 (15%)

Query: 117 IFRSHIKSYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           I +  I SYRNLP   Y++ +  FR E      G+ R R F M D ++     + +   +
Sbjct: 306 IKKDAIISYRNLPLRMYELTRYSFRREKSGELSGLRRLRAFTMPDMHTVARDLKQAMAEF 365

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            K +   + +   +GL                        +  E  +  ++DF +     
Sbjct: 366 KKQYKLSMEVLKGVGLTP----------------------EDYEVAIRFTEDFWN----- 398

Query: 235 ENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           EN DF      II    ++E W   +            D+L +   +S   I+V +   F
Sbjct: 399 ENRDFIVELAKIIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERF 458

Query: 291 GTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIE--SSHDGKGI--IWPDSV 344
           G         T+   DGK+ Y + +     GA+ RV+ A++E  +    KGI  ++P  +
Sbjct: 459 GI--------TYYDEDGKEKYPLILHCSPSGAIERVMYAILEKQAKLQSKGIKPMFPLWL 510

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ +I +    +   D    +  +L      V  DD  +++  +   A+    P  +
Sbjct: 511 SPIQVRVIPV---SEEVLDYALYVAGKLEGAKIRVDVDDTSDRLNKKIRKAEKEWIPYVI 567

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +VG      + + ++ R  G + +M LE++I
Sbjct: 568 VVGRNEKEQNTITVRRRSDGKQGEMQLEDLI 598


>gi|15921207|ref|NP_376876.1| threonyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|22654128|sp|Q973C8|SYT_SULTO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15621992|dbj|BAB65985.1| 540aa long hypothetical threonyl-tRNA synthetase [Sulfolobus
           tokodaii str. 7]
          Length = 540

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           GQ     +   + E     G  E+    +  + LW  SG YD Y  +M+ L    D+ + 
Sbjct: 162 GQIIRKELMKFMEEINESMGYQEVFTAEIYRSILWKTSGHYDYYKDKMV-LFKMEDEELG 220

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFD 164
             P +      I++S  +SY++LP  F +  L FR E R   +G++R R F+  D + F 
Sbjct: 221 LKPMNCPAHILIYKSKTRSYKDLPIRFSEFGLVFRWEKRGELYGLLRVRGFVQDDGHIF- 279

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           LT +  K     +    + +    G K   +R
Sbjct: 280 LTEDQIKDEVKMLVKKTIDVLSIFGFKGDDVR 311


>gi|315604309|ref|ZP_07879375.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314015|gb|EFU62066.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 677

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 169/451 (37%), Gaps = 77/451 (17%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGM-------IHQHSKGIYSWLPLGQKALDNVNAI 56
           SK  L   QE  ++AE   H+   R G+         +   G+  + P G      + + 
Sbjct: 235 SKEDLVAYQERIKEAERRDHR---RLGVELDLFSFPEEIGPGLVVFHPKGGILRHEIESY 291

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--------RLADRND------- 101
           + +   R G   +  P +    L+  SG    Y   M         R AD N        
Sbjct: 292 VTDRHKRAGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLVDEERDADGNVTKAGQEY 351

Query: 102 --KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMK 158
             KAM   P H      IFRS  +SYR LP  FY++   +R E      G+ R R F   
Sbjct: 352 YLKAM-NCPMHNL----IFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQD 406

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV-----L 213
           D++++  TPE +          +L I    GLK   +   +    G    +FI       
Sbjct: 407 DSHTY-CTPEQASQEIRTQIEFFLSILSAFGLKDFYLELSTRDEDGKKKDKFIGSDEDWA 465

Query: 214 ADTGETQVFCSKDFMDF-PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           A T   Q  C+   +D  P P     +   +S+                    ++ D++ 
Sbjct: 466 AATKALQDACAATGLDLVPDPGGAAFYGPKVSV--------------------QVKDAIG 505

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIES 331
              ++S     + + F    ++ L  +A    ADG +   V + S  +G++     V+  
Sbjct: 506 RTWQMST----IQYDFNQPERFDLEYTA----ADGTRQRPVMIHSAKLGSVERFIGVLTE 557

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            + G    W   ++P ++ LI + +A D    D   K+  R  +V  D+  D  G++I  
Sbjct: 558 HYAGAFPAW---LSPVQVRLIPVAEAFDGYVADVAAKLRERGVRVETDLSDDRFGKKI-- 612

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           + A  D +  P  +I G + V    V  + R
Sbjct: 613 RNASKDKI--PFTLIAGGEDVEAGAVSFRLR 641


>gi|332821648|ref|XP_003310808.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic [Pan troglodytes]
          Length = 756

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 367 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 426

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 427 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 485

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 486 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 541

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 542 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 578

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 579 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 627

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 628 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 681

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 682 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 738


>gi|315054053|ref|XP_003176401.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311338247|gb|EFQ97449.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 765

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 10/162 (6%)

Query: 10  ILQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +LQE+ +  E A  +  L+ G         + S G    LP G K  + +  ++R E  +
Sbjct: 310 LLQEHLKFLEEAEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRK 369

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+  P +    +W +SG +  Y  +M +L  ++ D A+   P +      +F    
Sbjct: 370 RGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKLDVEKRDWAL--KPMNCPGHCIMFGHRE 427

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +SYR LP       +  R+E      G+ R R+F   D + F
Sbjct: 428 RSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 469


>gi|239618448|ref|YP_002941770.1| threonyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|259516548|sp|C5CI64|SYT_KOSOT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239507279|gb|ACR80766.1| threonyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 648

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           ++++ G+  + P G   L+ +    RE  ++ G  E+  P + +  LW  SG +D Y ++
Sbjct: 260 YEYAPGMPIYHPKGTIVLNELMKFSREVHSKHGYQEVMTPQIMNDVLWHRSGHWDHY-RD 318

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +   +++++     P +      I++S   SYR+LP   ++     R E      G++R
Sbjct: 319 NMYFTEKDEQQYAIKPMNCPGHILIYKSRAMSYRDLPLKLFEFGKVHRYERSGVLHGLLR 378

Query: 152 SREFLMKDAYSF 163
            R F+  DA+ F
Sbjct: 379 VRGFIQDDAHIF 390


>gi|158340035|ref|YP_001521204.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158310276|gb|ABW31891.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 439

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 16/175 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + F  ++ +   + ++A H+ + R   + H  +HS G+  W P G +   ++   +R+  
Sbjct: 18  RVFYYLITQTTGETKMADHRELARDMDLFHFEEHSPGMVFWHPQGLRLFRSIEDFMRQVY 77

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDKAMI--------YGPT 109
              G  E+  P   +  LW  S  ++ + + M  +    AD +D++ +          P 
Sbjct: 78  QGHGFEEVRSPIALNRSLWERSRHWEKFRQGMFVVGSVEADIDDESALSVISPDYALKPM 137

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
                  I++S  +SYR  P    +  +  R+EL     G MR R+F+  DA+ F
Sbjct: 138 SCPAHIAIYQSRKRSYRENPMRLMEFGICHRNELSGTLSGCMRLRQFVQDDAHIF 192


>gi|47479652|gb|AAH69346.1| TARSL2 protein [Homo sapiens]
 gi|47480952|gb|AAH69811.1| TARSL2 protein [Homo sapiens]
          Length = 466

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y 
Sbjct: 77  FFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYS 136

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       D      P +      +F    +S+R +P  F    +  R+EL     G+
Sbjct: 137 ENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGL 195

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 196 TRVRRFQQDDAHIF 209


>gi|304403794|ref|ZP_07385456.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304346772|gb|EFM12604.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 637

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 145/396 (36%), Gaps = 45/396 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G    + + +  RE Q      E+  P + +  +W +SG +D Y 
Sbjct: 257 MFSEEAPGMPFYLPKGMAIRNELESFAREIQRLRAYAEVRTPLMMNNRIWEQSGHWDHY- 315

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           K+ +     ++      P +      I+++   SYR LP    +     R E      G+
Sbjct: 316 KDNMYFTQVDETKFALKPMNCPGHMLIYKNSRHSYRELPIRLSEFGQVHRHEFSGALSGM 375

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+               +FV   +I   +GL    +    G I       
Sbjct: 376 MRVRTFCQDDAH---------------LFVLPSQIEEEIGL----VIELIGHIYDVFGFA 416

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           + +   T       ++   D    S  +  D      +I E   A Y    D H   + D
Sbjct: 417 YKIELSTRPDDYMGAEALWDQAEQSLQSVLDARGIAYTINEGDGAFYGPKIDFH---ILD 473

Query: 270 SLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
           +L        R  + G I   F    K+ L    T+ G D   H  V +     G++   
Sbjct: 474 AL-------QRSWQCGTIQLDFQMPEKFDL----TYIGEDNLKHRPVVIHRAVYGSIDRF 522

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP +  L+ +   DQ   DA   +  +L + G     DD  
Sbjct: 523 IGILTEHYAGAFPLW---LAPVQAKLLPVS--DQYLDDAY-AVKKQLEEAGIRAEVDDRN 576

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           E++G +   A L   P  +I+G        V ++ R
Sbjct: 577 EKLGYKIREAQLEKTPYMLILGENERGSGSVSVRKR 612


>gi|114600748|ref|XP_001153418.1| PREDICTED: threonyl-tRNA synthetase isoform 2 [Pan troglodytes]
 gi|114600750|ref|XP_001153486.1| PREDICTED: threonyl-tRNA synthetase isoform 3 [Pan troglodytes]
 gi|114600752|ref|XP_001153550.1| PREDICTED: threonyl-tRNA synthetase isoform 4 [Pan troglodytes]
          Length = 664

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 275 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 334

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 335 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 393

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 394 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 449

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 450 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 486

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 487 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 535

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 536 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 589

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 590 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 646


>gi|54020489|ref|YP_115908.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|81823524|sp|Q600Q7|SYP_MYCH2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53987662|gb|AAV27863.1| prolyl aminoacyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 479

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++     + G  ++      +K  + K       S+G+ + R++ A++    D  G+I
Sbjct: 222 RALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVHSDDNGLI 280

Query: 340 WPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +P  +AP ++ ++      +Q  +   +KI   L         DD  +QIG +   +++ 
Sbjct: 281 FPPKIAPIQVDILEFFSKKNQEVKIFAKKIAKILKNAKISYKIDDTDQQIGYKINNSEVH 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+++ +G   V ++++ +  R
Sbjct: 341 GAPIRIEIGPNEVKNNQICLVRR 363


>gi|284031321|ref|YP_003381252.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810614|gb|ADB32453.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 417

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 166/406 (40%), Gaps = 69/406 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP G      + + + E + R+G   +  P L   +L+  SG +  Y  +M    
Sbjct: 23  GLPYLLPAGAAIRQALESYVAELERRSGYQHVYSPVLGKRELYELSGHWSHYSDDMYPPM 82

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++ ++  P+       I+RS   SYR LP  + ++   +R EL     G+ R R   
Sbjct: 83  KVGEEEVVLRPSLCPHHALIYRSRAHSYRELPVRYAELGGMYRSELSGVLGGLTRVRAIQ 142

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS----IPMRAESGPIGGDLSHEFIV 212
           + D + F    + +  +   + +  LR +  LGL+     + + A    I GD + +++ 
Sbjct: 143 LNDGHIFCTLDQVADEARAALDL-ILRAYGDLGLRPARFLLSLPAADARI-GDPASKYVG 200

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-----YAATSDVHNEKL 267
            A++ +      ++ +D                 + V+   AP     Y    DV   ++
Sbjct: 201 DAESWDRSAALLREVLD----------------EAGVQYEEAPGEAAFYGPKIDV---QI 241

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVV 325
            D+      +S   I+    F+   ++ L     + GADG  H  V +    IG++ RV+
Sbjct: 242 ADAAGRESTLSTIQID----FHQPARFEL----DYIGADGNKHRPVMVHRAIIGSLERVI 293

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A +IE  H G     P  +AP ++ ++ I        DA EK  A +++   D       
Sbjct: 294 AQLIE-LHGGA---LPGWLAPVQLVVLPIS-------DAEEKYAAEITRRAVD------- 335

Query: 386 EQIGSQFAVAD--LLG--------FPLQVIVGSKFVSDSKVEIKHR 421
             + ++ A AD   LG         P Q ++G++ +   ++ ++ R
Sbjct: 336 RGLRAELAHADEGTLGARIRENRLVPYQAVIGARELEAGQLAVRDR 381


>gi|124804231|ref|XP_001347941.1| threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|23496195|gb|AAN35854.1|AE014840_2 threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 1013

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G K  + +   IR+E       E+  P + S DLW  SG Y +Y K+ + 
Sbjct: 548 SPGSCFWLPHGSKIYNKLIEFIRKEYRIRKYEEVISPNVFSCDLWKTSGHYQNY-KDCMF 606

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L +  +K     P +      +F+    SYR+LP       +  R+E+     G+ R R 
Sbjct: 607 LFNVENKEWGMKPMNCPGHCLMFKQLNVSYRSLPVRLADFGVLHRNEISGSLSGLTRVRR 666

Query: 155 FLMKDAYSF 163
           F   D++ F
Sbjct: 667 FQQDDSHIF 675


>gi|325478873|gb|EGC81983.1| threonine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 640

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 158/412 (38%), Gaps = 45/412 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+   G   + P G   ++ +     +  N  G  E+  P + +  LW  SG +D Y KE
Sbjct: 257 HEEGPGFPFFHPNGMILMNELLGWWTDVLNENGYGEIKTPLILNEALWHRSGHWDHY-KE 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +   + + +A    P +       + ++  SYR+LP    +     R EL     G+ R
Sbjct: 316 NMYFTEIDGEAYAVKPMNCPGSVLTYAANQHSYRDLPIRLAEYGQVHRHELSGTLHGLFR 375

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEF 210
            R F   DA+ +  TP   K    +M      ++   G K +I +        GD+    
Sbjct: 376 VRTFTQDDAHVY-CTPNQIKEEVYRMIDLADLLYSTFGFKYTIELSTRPDDFMGDIKD-- 432

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               D  E Q+   K   +  I  E    D             A Y    D H   L D+
Sbjct: 433 ---WDFAEEQL--KKALEERGIEYEINPGD------------GAFYGPKIDFH---LLDA 472

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMS--ATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
                  + R  + G I      + LP +   T+   +G K   V +    +G++     
Sbjct: 473 -------AKREWQCGTI---QLDFQLPQNFDLTYIDENGEKQRPVMLHRALLGSIERFIG 522

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+     G+  +W   + P ++ +I +   D+   D  E++  ++ + G  V  D   E 
Sbjct: 523 VLTEHFAGRFPLW---LNPQQVEIIPVS--DKFI-DYAEELKQKIKEAGFRVNIDYRNEG 576

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G +   A L+     ++VG K  +  K+ +++R      D+SL+E I   S
Sbjct: 577 VGYKIRQAQLMRTNYMLVVGEKEETSGKLTVRNRDGEETPDVSLDEFIEKIS 628


>gi|284931186|gb|ADC31124.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 573

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 162/430 (37%), Gaps = 96/430 (22%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP GQ     +   +   Q + G + ++ P L + DL+ +SG Y+ Y K+M   L
Sbjct: 194 GMPIWLPNGQIVRQLIGDYVHSVQKKFGFMAVNTPILGNVDLYKKSGHYNHYAKDMFPEL 253

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF-RDELRPRF------ 147
            L D  DK M+   T           H   Y N P  +Y + ++   D L  R+      
Sbjct: 254 ALLD-GDKMMLRPMTCPH--------HCLVYLNKPRNYYDLPMRLSEDALLHRYEASGGL 304

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV------SYLRIFHRLGL---------- 190
            G+ R R   + D + F    +      N   V      ++   FHR+ L          
Sbjct: 305 TGLERVRAMTLLDNHIFCRLDQIKTEILNAYQVIKEVIGTFNLKFHRIDLSLHDPNDKQS 364

Query: 191 ----KSIPMRAESGPIGG--DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               + +  R+E+       DL  E+      GE   +  K  +DF +    T  + II+
Sbjct: 365 FIDNEQMWARSENQLEDALKDLGLEYT--KQVGEAAFYGPK--IDFQV---KTALNKIIT 417

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +++I   ++ P     D+             +      E G I + G             
Sbjct: 418 VSTIQLDFSLPSEEKFDI-----------KYKTKDNTYEQGVIIHLGI------------ 454

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCR 362
                    +G+Y     R VA ++E +  G   +W   +AP +  +I  N   H + C 
Sbjct: 455 ---------IGTYE----RFVATLLEQTK-GALDLW---LAPKQAVIIPVNNSVHLEGCN 497

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+ A+  +V      D   E++  +     +   P+Q+IVG   + +  + I +RL
Sbjct: 498 QLLEKLLAKDLRVTV----DSRDERLNKKIRDHQVNKIPVQIIVGDNELKNPDL-ITYRL 552

Query: 423 TGIREDMSLE 432
            G  +   LE
Sbjct: 553 YGQEDSNQLE 562


>gi|315123806|ref|YP_004065810.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017528|gb|ADT65621.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 457

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 50  KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 108

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 109 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 167

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP  F++  +  R E      G+ R REF   DA+ F
Sbjct: 168 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIF 208


>gi|290475179|ref|YP_003468065.1| putative Proline--tRNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289174498|emb|CBJ81292.1| putative Proline--tRNA ligase [Xenorhabdus bovienii SS-2004]
          Length = 383

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD- 358
           A +     ++   Q  +YG+G  R+   +++   D KG   P  V PF I++I ++  D 
Sbjct: 238 ARYCSNSNRNMNAQFVTYGLGLQRLFFVILDCYRDNKGFNLPKPVRPFDIAIIPLRDEDI 297

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             C +    +     ++  D   D    Q+  +   AD LG P ++     F+S+ +V +
Sbjct: 298 SRCLEFANCLQIPPDRMLID---DRCKTQVFEKERFADYLGIPQKL-----FISNQEVFV 349

Query: 419 KHRLTG--IREDMSLEEVINYASHRFSNNRP 447
           K+R TG  ++E   L + I   S  F N +P
Sbjct: 350 KNRDTGTFLKEVFQLSD-IKKESCSFFNIQP 379


>gi|83645563|ref|YP_433998.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|83633606|gb|ABC29573.1| Threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 415

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    V   IR         E++ P     +LW  SG ++ Y  +M   A
Sbjct: 22  GMAFWHPRGWRMFRTVKNHIRAAYEAESFQEVATPQFLKRELWETSGHWEKYADDMFVGA 81

Query: 98  DRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              ++      P        +++  ++SY++LP   ++  L  R+E      G+MR R+F
Sbjct: 82  GFGEEPEYALKPMSCPAHILLYKRGVRSYKSLPLRLFEFGLVHRNERSGALNGLMRLRQF 141

Query: 156 LMKDAYSF 163
              DA+ F
Sbjct: 142 TQDDAHVF 149


>gi|209882409|ref|XP_002142641.1| prolyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
 gi|209558247|gb|EEA08292.1| prolyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 687

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 121/328 (36%), Gaps = 63/328 (19%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 295 PTSETIIHPHYAKWIRSHRDLPLKLNQWTSAVRWEFKQPTPFIRTREFLWQEGHTAHATN 354

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E +      +   Y  I+                                       +D 
Sbjct: 355 EEATEMVRTILDDYADIY---------------------------------------QDL 375

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           +  PI         I  + S  E+    +A  ++    + F  +PEN     R I+    
Sbjct: 376 LAVPI---------IKGIKSESEK----FAGANETMTIEGF--IPEN----GRAIQAATS 416

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G  +S      F+   G   +V   S+G+   R +  +I +  D  GII P  VAP 
Sbjct: 417 HNLGQNFSSMFGIEFEDEKGTKQFVYQTSWGL-TTRSIGVMIMTHGDNNGIILPPKVAPI 475

Query: 348 KISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQ 403
           ++ +I I     +  +    CE++   L + G  V  DD      G ++   ++ G  ++
Sbjct: 476 QVVIIPIVFKSSITEEQKIMCEEVEKLLKEEGIRVHIDDRPNYTPGWKYNHWEVKGVCIR 535

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             +G K +    V I  R    ++D+ +
Sbjct: 536 AEIGPKDIESKSVRIVIRDNRAKKDIPI 563


>gi|62320472|dbj|BAD94986.1| putative protein [Arabidopsis thaliana]
          Length = 426

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 152/408 (37%), Gaps = 52/408 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G    + +    ++     G   +  P +  ADLW  SG  D Y + M    
Sbjct: 50  GLVFWHPKGAIVRNIIEESWKKMHVEHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQM 109

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  D+     P +      +++   +SYR+LP    ++   +R EL     G+ R R F 
Sbjct: 110 EIEDELYQLRPMNCPYHILLYQRKRQSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFT 169

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F L  +  K     +      I  R G     +   + P   +GGD        
Sbjct: 170 QDDAHIFCLEDQ-IKDEIRGVLDLTEEILSRFGFNKYEVNLSTRPEKSVGGD-------- 220

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  E      +D +D    S   D           E   A Y    D+   K+ D+L  
Sbjct: 221 -DIWEKATCALRDALDDRGWSYEVD-----------EGGGAFYGPKIDL---KIEDALGR 265

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRVVAAVIE 330
             + S   ++          ++LP        D    K   + +    +G++     V+ 
Sbjct: 266 KWQCSTIQVD----------FNLPQRFDITYVDTNSDKKRPIMIHRAVLGSLERFFGVLI 315

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
             + G   +W   ++P ++ ++ +  +  + C++  +K+ A      C V  +   GE++
Sbjct: 316 EHYAGDFPLW---LSPVQVRVLPVTDNQLEFCKEVSKKLRA------CGVRAELCHGERL 366

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                 A+    PL  +VG K V    V ++ R  G    + ++++IN
Sbjct: 367 PKLIRNAETQKIPLMAVVGPKEVETGTVTVRSRFGGELGTIPVDDLIN 414


>gi|50959620|gb|AAH74887.1| TARSL2 protein [Homo sapiens]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y 
Sbjct: 52  FFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYS 111

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       D   +  P +      +F    +S+R +P  F    +  R+EL     G+
Sbjct: 112 ENMFTFEIEKDTFAL-KPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGL 170

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 171 TRVRRFQQDDAHIF 184


>gi|325336816|gb|ADZ13090.1| Threonyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 591

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           G+  WLP G      + + + E Q + G   +  P + + +L+  SG Y+ YG +  +  
Sbjct: 260 GLPLWLPKGAALRKKLESFLSEAQRKGGYEFVMTPHIGNIELYKTSGHYEKYGADSFQPI 319

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 +  +  P +     +++++   SY++LP  + +    +R E      G+ R R 
Sbjct: 320 KTPHVGEEFLLKPMNCPHHCEVYKAQQWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRG 379

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           F   DA+ F  TP+     + K+    L +F  LG +
Sbjct: 380 FTQDDAHLF-CTPDQLLEEFEKVIDLVLYVFKSLGFE 415


>gi|303390083|ref|XP_003073273.1| threonyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302418|gb|ADM11913.1| threonyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
          Length = 646

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           ++S G   +LP G    + +   +REE  + G  E+  P +    LW ESG   +Y + M
Sbjct: 256 KYSPGSCFFLPNGAIMYNTLIEFLREEYRKRGFKEVITPNIFCTKLWEESGHLQNYKENM 315

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
             +   N       P +      +F+    S+R+LP       +  R+EL     G+ R 
Sbjct: 316 FLIEGDN---FALKPMNCPGHCVMFKHQDHSFRDLPLRLADFGVLHRNELSGTLTGLTRV 372

Query: 153 REFLMKDAYSF 163
           R F   DA+ F
Sbjct: 373 RRFQQDDAHIF 383


>gi|55741823|ref|NP_001006977.1| threonyl-tRNA synthetase, cytoplasmic [Rattus norvegicus]
 gi|59896667|sp|Q5XHY5|SYTC_RAT RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53734298|gb|AAH83914.1| Threonyl-tRNA synthetase [Rattus norvegicus]
          Length = 695

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/416 (20%), Positives = 162/416 (38%), Gaps = 57/416 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 307 FHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSE 366

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       ++  +  P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 367 NMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLT 425

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD   
Sbjct: 426 RVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD--- 480

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 481 --IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKIDI 518

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G
Sbjct: 519 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAILG 567

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+          V 
Sbjct: 568 SVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQEFHDAKFMVD 621

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D D G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++ E +
Sbjct: 622 IDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVGETV 677


>gi|71893734|ref|YP_279180.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
 gi|114152216|sp|Q4A9V2|SYP_MYCHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71851861|gb|AAZ44469.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 479

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++     + G  ++      +K  + K       S+G+ + R++ A++    D  G+I
Sbjct: 222 RALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVHSDDNGLI 280

Query: 340 WPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +P  +AP ++ ++      +Q  +   +KI   L         DD  +QIG +   +++ 
Sbjct: 281 FPPKIAPIQVDILEFFSKKNQEVKIFAKKIAKILKNAKISYKIDDTDQQIGYKINNSEVH 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+++ +G   V ++++ +  R
Sbjct: 341 GAPIRIEIGPNEVKNNQICLVRR 363


>gi|328773873|gb|EGF83910.1| hypothetical protein BATDEDRAFT_18299 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 706

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G +  + +  + R E  + G  E+  P + +  LW  SG + +Y ++M  
Sbjct: 320 SPGSAFFLPHGTRIYNTLIDLQRSEYRKRGFHEVVTPNMYNTKLWERSGHWANYHEDMFA 379

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L D   +     P +      IF++  +SYR LP       +  R+E      G+ R R 
Sbjct: 380 L-DVEKEKFALKPMNCPGHCLIFKNRDRSYRELPLRLADFGVLHRNEASGALSGLTRVRR 438

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 439 FQQDDAHIF 447


>gi|194374367|dbj|BAG57079.1| unnamed protein product [Homo sapiens]
          Length = 756

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 367 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 426

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 427 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 485

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 486 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 541

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 542 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 578

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 579 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 627

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 628 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 681

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 682 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 738


>gi|283955645|ref|ZP_06373138.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792870|gb|EFC31646.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 602

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/448 (20%), Positives = 175/448 (39%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV +
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDN 372

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +++F                   D S+E  +   T   +     +  +    +     D
Sbjct: 373 LMKLF-------------------DFSYEMEI--STKPEKAIGDDEIWEIATKALKEALD 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+   K+ D+L        R  + G I      ++LP   
Sbjct: 412 EQGLKYGIDEGGGAFYGPKIDI---KITDAL-------KRKWQCGTI---QVDFNLPSRF 458

Query: 301 TFKGADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
             +  D    K   V +    +G+      ++     G+   +P  +AP  + ++ I +A
Sbjct: 459 KLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPTAVGIVPIGEA 515

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H    ++    I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V
Sbjct: 516 HIAYAKE----IQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSV 571

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R    ++++SL+E I     + S 
Sbjct: 572 ALRDRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|117923678|ref|YP_864295.1| threonyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|259516564|sp|A0L4J6|SYT_MAGSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117607434|gb|ABK42889.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Magnetococcus
           sp. MC-1]
          Length = 648

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/389 (20%), Positives = 142/389 (36%), Gaps = 43/389 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    ++     G   +  P + +  LW  SG  D Y   M    
Sbjct: 263 GLVFWHPRGSRIRRVIEDFWKDRHVEAGYEFLYTPHIANRQLWNTSGHTDFYSDSMFSPM 322

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +++A    P +      I++    SYR LPF + ++   +R E+     G+ R R F 
Sbjct: 323 EVDEQAYQIRPMNCPFHILIYKDRRHSYRELPFRWGELGTVYRYEMSGALHGLFRVRGFT 382

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  T +  +    ++    L I    G     +   + P     S      A  
Sbjct: 383 QDDAHIF-CTEQQIEEEIQRILDLTLDILRTYGFSDFEINLSTRPEKSVGSAAIWDKATE 441

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
              +   S+D                  L+ +V E   A Y    DV   K+ DS+    
Sbjct: 442 ALRRAIVSRD------------------LSYVVDEGGGAFYGPKIDV---KITDSIGRKW 480

Query: 276 RVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESS 332
           + S   ++          ++LP      + G DG+ H  + +    +G++     ++   
Sbjct: 481 QCSTVQLD----------FNLPERFDMGYIGEDGESHRPIMIHRALMGSLERFFGILVEH 530

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + G   +W   +AP +  + +I           E + A L K G  V  D   E++G + 
Sbjct: 531 YAGWFPMW---LAPVQAVVCSITDAQHAY---AETVLAALKKAGLRVEIDLRNEKVGYKI 584

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               L   P  ++VG K   +  V ++ R
Sbjct: 585 REHTLKRVPYLLVVGDKEREEGTVNVRLR 613


>gi|322373920|ref|ZP_08048455.1| serine--tRNA ligase [Streptococcus sp. C150]
 gi|321277292|gb|EFX54362.1| serine--tRNA ligase [Streptococcus sp. C150]
          Length = 425

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  EM  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGAKLERAIYNFM------LD--------EHAKEGYTEMITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D  D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFEL-DGTDYVLI--PTAEVPLTNYYRGEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPESSYDELEKMVVNAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|193788250|dbj|BAG53144.1| unnamed protein product [Homo sapiens]
          Length = 619

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 230 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 289

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 290 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 348

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 349 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 404

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 405 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 441

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 442 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 490

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 491 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 544

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      + I+ R   +  + ++ E I
Sbjct: 545 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTINIRTRDNKVHGERTISETI 601


>gi|88597312|ref|ZP_01100547.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561885|ref|YP_002343664.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|73919778|sp|Q9PIS3|SYT_CAMJE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88190373|gb|EAQ94347.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359591|emb|CAL34375.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925497|gb|ADC27849.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928137|gb|EFV07455.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 602

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/448 (20%), Positives = 175/448 (39%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV +
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDN 372

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +++F                   D S+E  +   T   +     +  +    +     D
Sbjct: 373 LMKLF-------------------DFSYEMEI--STKPEKAIGDDEIWEIATKALKEALD 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+   K+ D+L        R  + G I      ++LP   
Sbjct: 412 EQGLKYGIDEGGGAFYGPKIDI---KITDAL-------KRKWQCGTI---QVDFNLPSRF 458

Query: 301 TFKGADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
             +  D    K   V +    +G+      ++     G+   +P  +AP  + ++ I +A
Sbjct: 459 KLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPTAVGIVPIGEA 515

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H    ++    I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V
Sbjct: 516 HIAYAKE----IQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSV 571

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R    ++++SL+E I     + S 
Sbjct: 572 ALRDRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|224090286|ref|XP_002193839.1| PREDICTED: threonyl-tRNA synthetase [Taeniopygia guttata]
          Length = 711

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/415 (20%), Positives = 162/415 (39%), Gaps = 57/415 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y   
Sbjct: 324 HELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVTPNVFNSKLWMTSGHWQHYSDN 383

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 384 MFSF-EVEKEIFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTR 442

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
            R F   DA+ F    +  +    K  + +LR  + +   S  +   + P    GD    
Sbjct: 443 VRRFQQDDAHIFCAMEQIEEEI--KSCLGFLRTVYDVFGFSFKLNLSTRPEKYLGD---- 496

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVH 263
            I + +  E Q+             EN       SLN+  E+W       A Y    D+ 
Sbjct: 497 -IEVWNQAEKQL-------------EN-------SLNAFGEKWELNPGDGAFYGPKIDI- 534

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGA 321
             ++ D++    + +   ++    F    +++L    TF   DG D    V +    +G+
Sbjct: 535 --QIKDAIGRYHQCATIQLD----FQLPVRFNL----TFVSHDGNDKTRPVIIHRAILGS 584

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+       G     
Sbjct: 585 VERMIAILTENYGGK---WPLWLSPQQVMVVPVGP---ACDEYAQKVRQHFHDAGFMADV 638

Query: 382 D-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D D G  +  +   A +  +   ++VG K  +   V I+ R   +  + ++ + +
Sbjct: 639 DVDPGCTLNKKIRNAQIAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTIADTV 693


>gi|297613111|ref|NP_001066707.2| Os12g0443700 [Oryza sativa Japonica Group]
 gi|77554943|gb|ABA97739.1| Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza
           sativa Japonica Group]
 gi|215697485|dbj|BAG91479.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740854|dbj|BAG97010.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218186797|gb|EEC69224.1| hypothetical protein OsI_38226 [Oryza sativa Indica Group]
 gi|222617028|gb|EEE53160.1| hypothetical protein OsJ_35987 [Oryza sativa Japonica Group]
 gi|255670276|dbj|BAF29726.2| Os12g0443700 [Oryza sativa Japonica Group]
          Length = 510

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RG++       G  ++     TF+   G    V   S+     R +  ++ +  D KG
Sbjct: 245 TGRGVQGATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWAY-TTRSIGVMVMTHGDDKG 303

Query: 338 IIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
           ++ P  VAP ++ +I +   D       + C+K    L K G     D       G +++
Sbjct: 304 LVLPPRVAPLQVIVIPVPYKDVDTTAIVNECKKTVETLEKAGIRADLDTRENYSPGWKYS 363

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             ++ G PL++ +G K +++++  +  R  G + D+   +++
Sbjct: 364 HWEMKGVPLRIEIGPKDMANNQARVVRRDNGAKADIPTADLV 405



 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F   I+S+R+LP    Q     R E       +RSREFL ++ ++   T 
Sbjct: 133 PTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 192

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y RI+   
Sbjct: 193 EEADEEVLQILELYRRIYEEF 213


>gi|149499809|ref|XP_001513531.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2, partial
           [Ornithorhynchus anatinus]
          Length = 677

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/407 (19%), Positives = 163/407 (40%), Gaps = 37/407 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y 
Sbjct: 288 FFHDLSPGSCFFLPRGAFLYNTLLDFIREEYHKRNFTEVVSPNVYNSKLWETSGHWQHYS 347

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    D   +     P +      +F    +S+R +P       +  R+EL     G+
Sbjct: 348 ENMFSF-DVEKETFALKPMNCPGHCLMFAHRPRSWREMPIRLADFGVLHRNELSGTLSGL 406

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F   DA+ F +  +  +    K  + +L+  + +   S  +   + P        
Sbjct: 407 TRVRRFQQDDAHIFCMMEQIEEEM--KGCLQFLQSVYSVFGFSFQLNLSTRP------EN 458

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+     GE + +   D  +  + +   +F +   LN       A Y    D+   K+ D
Sbjct: 459 FL-----GEIETW---DQAEKQLQNSLKEFGEPWKLNPGD---GAFYGPKIDI---KIKD 504

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           ++    + +   ++    F    +++L   +  K +D K   V +    +G++  + A++
Sbjct: 505 AIGRYHQCATIQLD----FQLPIRFNLTYVS--KESDDKKRPVIIHRAILGSVERMIAIL 558

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQI 388
             ++ GK   WP  ++P ++ +I +      C +  ++I +   + G     D D    +
Sbjct: 559 SENYGGK---WPFWLSPRQVMVIPVGP---TCEEYAQQIRSEFFEAGFMADVDLDQSSTL 612

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +   A L  +   ++VG K   ++ V ++ R   I  ++S+   I
Sbjct: 613 NKKIRNAQLAQYNFILVVGEKEKGNNAVNVRTRDNKIHGEISVNSAI 659


>gi|22325483|ref|NP_671778.1| EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA
           ligase/ ligase, forming aminoacyl-tRNA and related
           compounds / nucleotide binding / threonine-tRNA ligase
           [Arabidopsis thaliana]
 gi|330250779|gb|AEC05873.1| putative threonyl-tRNA synthetase, putative / threonine--tRNA
           ligase [Arabidopsis thaliana]
          Length = 650

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 152/408 (37%), Gaps = 52/408 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G    + +    ++     G   +  P +  ADLW  SG  D Y + M    
Sbjct: 274 GLVFWHPKGAIVRNIIEESWKKMHVEHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQM 333

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  D+     P +      +++   +SYR+LP    ++   +R EL     G+ R R F 
Sbjct: 334 EIEDELYQLRPMNCPYHILLYQRKRQSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFT 393

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F L  +  K     +      I  R G     +   + P   +GGD        
Sbjct: 394 QDDAHIFCLEDQ-IKDEIRGVLDLTEEILSRFGFNKYEVNLSTRPEKSVGGD-------- 444

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  E      +D +D    S   D           E   A Y    D+   K+ D+L  
Sbjct: 445 -DIWEKATCALRDALDDKGWSYEVD-----------EGGGAFYGPKIDL---KIEDALGR 489

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRVVAAVIE 330
             + S   ++          ++LP        D    K   + +    +G++     V+ 
Sbjct: 490 KWQCSTIQVD----------FNLPQRFDITYVDTNSDKKRPIMIHRAVLGSLERFFGVLI 539

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
             + G   +W   ++P ++ ++ +  +  + C++  +K+ A      C V  +   GE++
Sbjct: 540 EHYAGDFPLW---LSPVQVRVLPVTDNQLEFCKEVSKKLRA------CGVRAELCHGERL 590

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                 A+    PL  +VG K V    V ++ R  G    + ++++IN
Sbjct: 591 PKLIRNAETQKIPLMAVVGPKEVETGTVTVRSRFGGELGTIPVDDLIN 638


>gi|256384016|gb|ACU78586.1| proline--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384848|gb|ACU79417.1| proline--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455440|gb|ADH21675.1| proline--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 474

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D  G+
Sbjct: 222 GQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDDNGL 280

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  ++P +I +I IK  +Q+     E I  +LS    DV  D+  +  G + + A++ 
Sbjct: 281 VLPSKISPIQIQIIQIKNTEQI-DQVVEIIKDKLSDYRIDV--DNSDKSFGFKISEAEIK 337

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+++ +G + + ++++ I  R
Sbjct: 338 GIPIRIEIGPRDLENNQITISRR 360



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKEKDHIEGFSPEIAT 94

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--LKFRDELRPRFGV 149
           +    +K +       PT E VM D F + I SYR+LP  + Q    +++    RP    
Sbjct: 95  VTKVGEKQLEENLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRP---F 151

Query: 150 MRSREFLMKDAYS 162
           +R+ EFL ++ ++
Sbjct: 152 LRTSEFLWQEGHT 164


>gi|331090802|ref|ZP_08339649.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399910|gb|EGG79569.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 653

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/417 (19%), Positives = 160/417 (38%), Gaps = 61/417 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G   +  +   + +E+ + G +    P +   DL+V S  +  Y + M  L
Sbjct: 259 QGLPLLMPKGAAIIQTMQRWVEDEEEKRGYVRTKTPLMAKKDLYVISDHWGHYKEGMFVL 318

Query: 97  ADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
            D +   ++     P        +++   KSYR+LP  + +    FR+E      G+ R 
Sbjct: 319 GDEDKEGEEVFALRPMTCPFQYYVYKQSQKSYRDLPCRYGETSTLFRNEDSGEMHGLTRV 378

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F + + +   +TPE  +  +             LG++             D+++   +
Sbjct: 379 RQFTISEGH-LVITPEQVEDEFRGCVDLAKYCLTTLGVEE------------DVTYRLSL 425

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIIS--LNSIVEQWT------APYAATSDVHN 264
                  +   +++  D        + +DI+   LN +   +T      A Y    D+  
Sbjct: 426 ADPDNMDKYLGTREMWD--------EVEDIMRKMLNHLEIDYTEETGEAAFYGPKLDIQA 477

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV----QMGSYGIG 320
           + ++      K  +   I++    +   ++   MS   K  + K  Y+     MG Y   
Sbjct: 478 KNVY-----GKEDTMITIQLD--MFLAERFD--MSFVDKDGEKKRPYIIHRTAMGCYE-- 526

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCD 378
             R +A +IE        ++P  + P ++ ++ I  K HD        ++   L   G  
Sbjct: 527 --RTLAWLIEKYAG----LFPTWLCPEQVRVLPISEKYHDYA-----HQVLGELRANGIK 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              DD  E+IG +     L   P  ++VG+K   +  V ++ R  G     SL+  I
Sbjct: 576 CTVDDRAEKIGYKIRETRLDKVPYMLVVGAKEEEEKVVSVRSRFLGDEGQKSLDTFI 632


>gi|282856964|ref|ZP_06266215.1| proline--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282585125|gb|EFB90442.1| proline--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 478

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++   +  F+  +G   Y    S+G+ + R++ A+I +  D  G+I
Sbjct: 220 KALQAGTSHFLGQNFAKAFNIQFQDQNGAMQYAWTTSWGV-STRMIGAIIMTHSDNDGLI 278

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKV--GCDVFWDDMGE-QIGSQFA 393
            P  VAP K  ++ I   D    +   K +    RL+ V     V  D+    +   +F 
Sbjct: 279 LPPRVAPVKAVILPISKDDATFAELDAKAHELANRLNSVLGPLTVRVDEQNHMRPADRFF 338

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                G PL++ +G K  +   V    R TG++ED+  E
Sbjct: 339 YHLQKGVPLRLELGEKDAAAGTVRAVRRDTGVKEDLKWE 377



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRL----AD 98
           P G    +++ A   +    TG +    P L  S+ L  E+   + +  E   +     +
Sbjct: 39  PTGYAIWEDLQAKFDKAFKETGHVNAYFPLLIPSSFLRKEAEHVEGFAPECAVVTHAGGE 98

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E V+  ++   ++S+R+LP    Q     R E RPR   +R+ EFL +
Sbjct: 99  ELEEPLVIRPTSETVIGAMYSKWVQSWRDLPLLINQWANVLRWEKRPRL-FLRTSEFLWQ 157

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + ++   T   ++    KM   Y +I 
Sbjct: 158 EGHTAHATAAEAEEETVKMLNVYAKIM 184


>gi|119383706|ref|YP_914762.1| threonyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|166225473|sp|A1B0M2|SYT_PARDP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119373473|gb|ABL69066.1| Ser-tRNA(Thr) hydrolase [Paracoccus denitrificans PD1222]
          Length = 648

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 155/416 (37%), Gaps = 54/416 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      + A +R    R    E+  P +    LW +SG +++Y + 
Sbjct: 261 QEEAPGMVFWHPNGWSIYRELEAYMRRRLIRADYKEIKTPQVVDRILWEKSGHWEAYREN 320

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M  +       +  +     P +      ++   +KSYR+LP    +     R E     
Sbjct: 321 MFIVEVDEEGAKEKRINALKPMNCPCHVQVYNQGLKSYRDLPLRLAEFGSCHRYEPSGSM 380

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGP---I 202
            G+MR R F+  DA+ F    E    +    F+  L  ++  LG +   ++  + P   +
Sbjct: 381 HGLMRVRGFVQDDAHIF--CTEDQIEAECAGFIGLLSSVYKDLGFEKFDIKLSTRPDVRV 438

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           G D       + D  E  +  + + +D P      D               A Y    D 
Sbjct: 439 GSD------EIWDKAEAALKGAIEHLDLPYEVNPGD--------------GAFYGPKLDF 478

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGI 319
              KL D++        R  + G    F   ++LP  + A + G DG  H  V +    +
Sbjct: 479 ---KLTDAI-------GREWQCG---TFQCDFNLPQRLEAEYVGEDGAKHMPVMLHRAVL 525

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G+      ++  ++ GK  +W   +AP ++ + +I +      D   ++ A L   G   
Sbjct: 526 GSFERFIGILIENYSGKLPLW---LAPRQVVVASIVSG---ADDYVHEVVAALRAAGLRA 579

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   E+I  +     +   P+ + VG K V +  V I+       E   LE  I
Sbjct: 580 EADTRNEKINYKVREHSVGKVPVIMAVGLKEVEERSVSIRRLDRQGSESHGLESAI 635


>gi|302348192|ref|YP_003815830.1| Prolyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328604|gb|ADL18799.1| Prolyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 482

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 6/166 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG+  W+P G +    V  ++R+  + TG  E+  P L     L  ES     +  E+  
Sbjct: 35  KGMGVWMPYGFQIRRRVTDLLRKLLDETGHEEVLFPLLIPDWMLAKESEHVKGFEDEVYW 94

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +  D+ +   PT E  +T      ++SY+ LP  FYQI   FR E +    ++R
Sbjct: 95  VTHGGLEELDQKLALRPTSETPITYYESLWVQSYKQLPRKFYQIVSVFRYETKATRPLIR 154

Query: 152 SREFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            RE  M K+A++   + E ++    +    Y + F  LG+  I  R
Sbjct: 155 VREISMFKEAHTVHESFEDAESQVKEAIDVYRKFFDSLGIPYIISR 200



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 6/169 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R +++G +   G  ++   S   +  D K  Y    SYG+   RVVA +I    D  G+
Sbjct: 223 GRTLQIGTVHNLGQNFTKAFSFRIQTRDEKFDYPWQTSYGVSD-RVVATLIAIHGDDMGL 281

Query: 339 IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV---GCDVFWDDMGEQI-GSQFA 393
           + P  +AP +  +I I +  ++  R   E     LS +   G     DD  +   G ++ 
Sbjct: 282 VLPPDIAPTQAVIIPIPSQSEEDSRKVLEYSRGVLSTLLSSGIRAKLDDREDTTPGDKYY 341

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             D  G P++V +G +  S + V I  R T  +  + L E +      F
Sbjct: 342 YWDAKGVPVRVEIGPREASGNTVTIVRRDTLEKRTVPLSEAVGSIKKTF 390


>gi|302656156|ref|XP_003019834.1| hypothetical protein TRV_06122 [Trichophyton verrucosum HKI 0517]
 gi|291183606|gb|EFE39210.1| hypothetical protein TRV_06122 [Trichophyton verrucosum HKI 0517]
          Length = 764

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 10  ILQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +LQE+ +  E A  +  L+ G         + S G    LP G K  + +  ++R E  +
Sbjct: 311 LLQEHLKFLEEAEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRK 370

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +
Sbjct: 371 RGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGHRER 429

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP       +  R+E      G+ R R+F   D + F
Sbjct: 430 SYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 470


>gi|302497531|ref|XP_003010766.1| hypothetical protein ARB_03468 [Arthroderma benhamiae CBS 112371]
 gi|291174309|gb|EFE30126.1| hypothetical protein ARB_03468 [Arthroderma benhamiae CBS 112371]
          Length = 764

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 10  ILQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +LQE+ +  E A  +  L+ G         + S G    LP G K  + +  ++R E  +
Sbjct: 311 LLQEHLKFLEEAEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRK 370

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +
Sbjct: 371 RGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGHRER 429

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP       +  R+E      G+ R R+F   D + F
Sbjct: 430 SYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 470


>gi|320583690|gb|EFW97903.1| proline--trna ligase, putative [Pichia angusta DL-1]
          Length = 666

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSH 333
            + RGI+     + G  +S   + + +   G +H   Y    S+G+ + RV+  ++    
Sbjct: 380 TTGRGIQGATSHHLGQNFSKMFNISVENPLGPEHPKIYAHQTSWGL-STRVIGVMVMIHS 438

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCR-------DACEKIYARLSKVGCDVFWDDMGE 386
           D KG++ P  VA  ++ +I +   ++  +       + C ++ +RL K       D    
Sbjct: 439 DNKGLVIPPRVAQNQVVIIPVGITNKTTKEIENKLYETCSELNSRLKKADVRTITDFRDN 498

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              G +F+  +L G P+++ VG K ++++ V    R  G +  +SL+ V
Sbjct: 499 YSPGWKFSDWELKGVPVRLEVGPKDIANNSVMAVRRDNGEKTALSLDTV 547



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 269 PTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTK 328

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +    +K+   Y  ++  L
Sbjct: 329 EEASEQVSKILDLYAGVYEEL 349


>gi|114600738|ref|XP_517835.2| PREDICTED: threonyl-tRNA synthetase isoform 10 [Pan troglodytes]
 gi|114600740|ref|XP_001153787.1| PREDICTED: threonyl-tRNA synthetase isoform 6 [Pan troglodytes]
 gi|114600742|ref|XP_001153971.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 9 [Pan
           troglodytes]
          Length = 723

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 453 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 508

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 509 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 545

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 546 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 594

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 595 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 648

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 649 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 705


>gi|89897864|ref|YP_514974.1| threonyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123722330|sp|Q256F9|SYT_CHLFF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89331236|dbj|BAE80829.1| threoninyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 635

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/430 (20%), Positives = 162/430 (37%), Gaps = 54/430 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  +   KL L +    + S G+  + P G    D +    +      G  E+  P L 
Sbjct: 236 RDHRVLGTKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRLHQLAGYKEILTPQLV 293

Query: 76  SADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           +  LW  SG + +Y + M  L  D  D A+   P +       +++ + SY+  P    +
Sbjct: 294 NRSLWEVSGHWSNYKENMYTLKIDEEDYAI--KPMNCPGCMLYYKTRLHSYKEFPLRIAE 351

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-- 191
           I    R E+     G+MR R F   DA+ F LTPE  +     +      ++   GL+  
Sbjct: 352 IGHVHRYEISGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILNLVSELYSTFGLEYH 410

Query: 192 -SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             +  R E   IG D   E   LA             ++  + + NT F  +I+      
Sbjct: 411 LELSTRPEKATIGSD---ELWDLATAA----------LERALINSNTPF--VINPGD--- 452

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG 307
              A Y    D+H           K    R  + G I    +   ++ L     +  A G
Sbjct: 453 --GAFYGPKIDIH----------VKDAIQRTWQCGTIQLDMFLPERFEL----EYTNAQG 496

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   + +     G++     ++     G+  +W   ++P  + LI +    Q      +
Sbjct: 497 EKSTPIMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHVRLITVADRHQ---PRAQ 550

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++     ++G  V  DD  E +  +   A  +     V +G + + ++ + ++ R   + 
Sbjct: 551 ELATAWQQLGFVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEENTLAVRTRDNRVL 610

Query: 427 EDMSLEEVIN 436
            +M+++  IN
Sbjct: 611 NNMTIDTFIN 620


>gi|123981026|gb|ABM82342.1| threonyl-tRNA synthetase [synthetic construct]
 gi|123995829|gb|ABM85516.1| threonyl-tRNA synthetase [synthetic construct]
          Length = 711

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 322 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 381

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 382 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 440

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 441 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 496

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 497 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 533

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 534 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 582

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 583 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 636

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 637 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 693


>gi|62897167|dbj|BAD96524.1| threonyl-tRNA synthetase variant [Homo sapiens]
          Length = 723

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 453 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 508

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 509 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 545

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 546 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 594

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 595 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 648

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 649 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 705


>gi|38202255|ref|NP_689508.3| threonyl-tRNA synthetase, cytoplasmic [Homo sapiens]
 gi|60267755|sp|P26639|SYTC_HUMAN RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33875537|gb|AAH00517.2| Threonyl-tRNA synthetase [Homo sapiens]
 gi|119631209|gb|EAX10804.1| threonyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
 gi|158258124|dbj|BAF85035.1| unnamed protein product [Homo sapiens]
 gi|168277378|dbj|BAG10667.1| threonyl-tRNA synthetase [synthetic construct]
 gi|190690713|gb|ACE87131.1| threonyl-tRNA synthetase protein [synthetic construct]
          Length = 723

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 163/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 453 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 508

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 509 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 545

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 546 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 594

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 595 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 648

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 649 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 705


>gi|326477787|gb|EGE01797.1| threonyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 763

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 10  ILQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +LQE+ +  E A  +  L+ G         + S G    LP G K  + +  ++R E  +
Sbjct: 311 LLQEHLKFLEEAEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRK 370

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +
Sbjct: 371 RGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGHRER 429

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP       +  R+E      G+ R R+F   D + F
Sbjct: 430 SYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 470


>gi|310789482|gb|EFQ25015.1| glycyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 664

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 14/117 (11%)

Query: 316 SYGIGAMRVVAAVIE------SSHDG----KGII-WPDSVAPFKISLINIKAHDQVCRDA 364
           S+GIG  R++ ++IE      ++ DG    +G++ +P +VAP K+ ++ + A+ Q  +  
Sbjct: 504 SFGIG--RILYSLIEHVYWNRATEDGGDEARGVLSFPPTVAPTKVLIVPLSANKQF-QPF 560

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             KI  +L K+G     D     IG +++  D LG PL + +  + V DS + ++ R
Sbjct: 561 INKISQKLRKIGISARVDSSSATIGKRYSRNDELGTPLGITIDFQTVQDSTITLRDR 617



 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK--HSYNKMFVSY 181
           + + +PF    I   +R+E+ PR G++R REFLM +   F + PEG K  H + ++    
Sbjct: 236 NMQQMPFASASIGRSYRNEISPRAGLLRVREFLMAEIEHF-VDPEGGKKHHRFPEVDAIE 294

Query: 182 LRIFHR 187
           L +  R
Sbjct: 295 LTLLDR 300


>gi|327308738|ref|XP_003239060.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326459316|gb|EGD84769.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 764

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 10  ILQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +LQE+ +  E A  +  L+ G         + S G    LP G K  + +  ++R E  +
Sbjct: 311 LLQEHLKFLEEAEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRK 370

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +
Sbjct: 371 RGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGHRER 429

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP       +  R+E      G+ R R+F   D + F
Sbjct: 430 SYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 470


>gi|327472776|gb|EGF18203.1| serine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 425

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|325972697|ref|YP_004248888.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027935|gb|ADY14694.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 581

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 2/165 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P+G +   ++    R E    G   +  P +  + LW  SG  D Y   M    
Sbjct: 204 GLVYWHPMGARIRQSIENFWRSEHYANGYEMVYTPHIGRSWLWETSGHLDFYKDGMYPPM 263

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           + +       P +      I+++   SYR+LP  + ++   +R ++     G+MR R F 
Sbjct: 264 EMDKSDYYVKPMNCPFHIMIYKNSKHSYRDLPCRWAELGTVYRYEKAGAMHGLMRVRGFT 323

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
             DA+ F +TP+       ++    L + H  G   I     + P
Sbjct: 324 QDDAHLF-VTPDQMNDEILEVLRFSLHMLHSFGFTEINAYLSTKP 367


>gi|313126275|ref|YP_004036545.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Halogeometricum
           borinquense DSM 11551]
 gi|312292640|gb|ADQ67100.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Halogeometricum
           borinquense DSM 11551]
          Length = 641

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P L   +LW +SG YD+Y  +M  L D ND+     P +      IF  +  SYR+L
Sbjct: 293 VETPHLFRTELWKKSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFDQNSWSYRDL 351

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +++    +R E R    G+ R   F + D + F   PE  +    ++  S   +   
Sbjct: 352 PVRYFEDGKVYRKEQRGELSGLSRVWSFTIDDGHLF-CRPEQIEQEIRQVMNSIYEVLDT 410

Query: 188 LGLKS 192
            GL++
Sbjct: 411 FGLEA 415


>gi|257053756|ref|YP_003131589.1| prolyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256692519|gb|ACV12856.1| prolyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 484

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++     T+   D +       S+G+ + R + A+  +  D +G+
Sbjct: 225 GKSVQGGTSHYLGTSFAEAYDVTYVDEDEEVKTAHTTSWGL-SWRALGALFMTHSDDQGL 283

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P ++A  ++ ++ I    + D V   A E + A L   G  V  DD   +  G ++  
Sbjct: 284 VLPPTLAETQVVIVPIWDEDSKDDVLAYA-EDVEADLEDAGVRVELDDRDHRNPGFKYNE 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +L G PL++ +GS  V+D ++ + HR  G  E++++E
Sbjct: 343 HELNGVPLRIEIGSYEVADDELTLVHRPDG--EEITVE 378


>gi|242278821|ref|YP_002990950.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259516380|sp|C6BRH1|SYT_DESAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|242121715|gb|ACS79411.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 642

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 157/387 (40%), Gaps = 41/387 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+E  + G   +  P +   +LW +SG YD+Y +E +   
Sbjct: 259 GMTIWHPKGALIRAILEDFERKEHLKRGYQFVQGPLILKRELWEKSGHYDNY-RENMYFT 317

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++++    P +      +F+S ++SYR+LP  +++  +  R E      G++R R F 
Sbjct: 318 EIDEQSYGIKPMNCLSHMLVFKSRLRSYRDLPQRYFEHGVVHRHEKSGVLHGLLRVRTFT 377

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+     P+                  +L  + I +    G + G    E+     T
Sbjct: 378 QDDAHLI-CRPD------------------QLRDEIIGVAKFVGDVMGLFGFEYEAEVST 418

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   S +  D    +      ++    SI E   A Y    D+    + D+L   +R
Sbjct: 419 KPEKAIGSDEDWDRATEALEGALKEMGMEYSINEGDGAFYGPKIDI---IIKDAL--ERR 473

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHD 334
                I+    F    ++ L    ++ G DG+ H  V +    +G++ R +  ++E  H 
Sbjct: 474 WQCATIQCD--FTLPERFDL----SYVGEDGERHRPVMLHRVILGSIERFIGVLLE--HT 525

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G  +  P  ++P +  ++ +        +  +K+   L + G     DD  E++G +   
Sbjct: 526 GGAL--PAWLSPVQAKILTVTDSQN---EFAQKVLQFLREKGIRAEVDDRNEKLGYKVRE 580

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           A L   P  +++G K V+   V ++ R
Sbjct: 581 AQLEKIPYMLVIGDKEVAAESVNVRAR 607


>gi|324500217|gb|ADY40110.1| Bifunctional aminoacyl-tRNA synthetase [Ascaris suum]
          Length = 1924

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 129/338 (38%), Gaps = 69/338 (20%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   IKS+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 1531 PTSETVMYPSYAKWIKSHRDLPLRLNQWCNVVRWEFKHPTPFLRTREFLWQEGHTAFQTA 1590

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            E +     ++   Y +++    L +IP                +V     E + F   DF
Sbjct: 1591 EEAHQEVFQILDLYAKVY--TDLLAIP----------------VVKGRKSEKEKFAGGDF 1632

Query: 228  MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                               + VE +                        V+ R I+    
Sbjct: 1633 ------------------TTTVEAYVP----------------------VNGRAIQGATS 1652

Query: 288  FYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             + G  +S     +F+  + G   YV   S+G+   R + A++    D  G++ P  VAP
Sbjct: 1653 HHLGQNFSKMFDISFEDPNTGSKAYVYQNSWGL-TTRTIGAMVMIHGDDFGLVLPPRVAP 1711

Query: 347  FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-------DMGEQI--GSQFAVADL 397
             ++ ++ +    Q   +    + ++  ++   +  +       D+ +    G +F   + 
Sbjct: 1712 IQVIVVPVGITAQTSEEQRVSLISKAKEIASMLLTEADIRAEADLRDNYSPGWKFNHWEQ 1771

Query: 398  LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             G P+++ VG K V++S+V    R +G +  + +  +I
Sbjct: 1772 KGVPIRMEVGPKDVANSQVTCVIRHSGKKVAVPMANLI 1809


>gi|330840876|ref|XP_003292434.1| hypothetical protein DICPUDRAFT_157146 [Dictyostelium purpureum]
 gi|325077326|gb|EGC31046.1| hypothetical protein DICPUDRAFT_157146 [Dictyostelium purpureum]
          Length = 686

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------DGKGII-WPDSV 344
           TK  + ++   +   GK++Y  +     G  R++ A++E ++      + +G++  P  +
Sbjct: 509 TKEMVTITKGQEKKSGKNYYPHVIEPSFGLGRIIYALLEQNYWTRENDEQRGVLSLPAII 568

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP K S++ +   +++      KI   L + G     DD G  IG ++A  D +G P  +
Sbjct: 569 APVKASILPLTNSEKLV-PFVAKISKLLKEAGISTKLDDTGNAIGRKYARTDEIGIPFGI 627

Query: 405 IVGSKFVSDSKVEIKHRLT 423
            +    V D  V ++ R T
Sbjct: 628 TIDFTTVEDETVTLRERDT 646



 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 112 EVMTDIFRSHIKSY----RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           E    IF +  K Y    + LPF   QI   FR+E+ PR G++R REF M +   F + P
Sbjct: 253 ETAQGIFVNFAKLYEFNGKKLPFAAAQIGNAFRNEIAPRSGLLRVREFTMAEIEHF-VNP 311

Query: 168 EGSKH 172
               H
Sbjct: 312 NEKTH 316


>gi|149910913|ref|ZP_01899544.1| threonyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805980|gb|EDM65964.1| threonyl-tRNA synthetase [Moritella sp. PE36]
          Length = 513

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 14/180 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H+ G   W+    + L+N   +IRE+       E+  P +    LW +SG +D Y
Sbjct: 262 GMVFWHNDG---WIIF--RELEN---LIREKLREFDYQEVKGPQIMDRSLWEKSGHWDKY 313

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M      N +  I  P +      I+   +KSYR+LP    +     R+E      G
Sbjct: 314 SEGMFCTHSENREYAI-KPMNCPGHVQIYNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHG 372

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           +MR R F   DA+ F  T    +   +         +   G ++I ++  + P   +G D
Sbjct: 373 LMRVRGFTQDDAHIF-CTESQIQKEVSDCIKMVFETYATFGFENIEIKLSTRPEKRVGSD 431


>gi|312862541|ref|ZP_07722783.1| serine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311101946|gb|EFQ60147.1| serine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  EM  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGAKLERAIYNFM------LD--------EHAKEGYTEMITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D  D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFEL-DGTDYVLI--PTAEVPLTNYYRGEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPESSYDELEKMVVNAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|300114474|ref|YP_003761049.1| threonyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299540411|gb|ADJ28728.1| threonyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 644

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P+G +    +    +E         +  P +   +LW  SG  D Y + M +  
Sbjct: 262 GLVFWHPMGARIRRVIEDFWQERHTAASYETLYTPHIAHEELWQTSGHTDFYRESMYQPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + +     P +      +++  ++SYR LP  + ++   +R E+     G+MR R F 
Sbjct: 322 EDDHQLYQLKPMNCPFHVLVYQGRLRSYRELPIRWAELGTVYRHEMSGALHGLMRVRGFT 381

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 382 QDDAHIF 388


>gi|325679048|ref|ZP_08158642.1| threonine--tRNA ligase [Ruminococcus albus 8]
 gi|324109172|gb|EGC03394.1| threonine--tRNA ligase [Ruminococcus albus 8]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 154/410 (37%), Gaps = 44/410 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+   LP G K +  +   I +E+ R G      P +   +L+  SG +D Y   M  
Sbjct: 261 GQGLPILLPKGAKVIQTLQRWIEDEEYRRGYQLTKTPFMSKRELYKISGHWDHYRDGMFI 320

Query: 96  LADRNDK---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           L D +D+        P        +F +  +SYR+LP    +    FR E      G++R
Sbjct: 321 LGDPDDETKECFALRPMTCPFQYQVFLNRKRSYRDLPMRLGETSTLFRKEDSGEMHGLIR 380

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F + + +   + PE  +  +             +GL        S     + ++++ 
Sbjct: 381 VRQFTISEGHLI-IRPEQLEDEFKGCLALAKYCLETIGLAEDVSYRFSQWDPANPNNKYE 439

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+  E      K  +D      +   D  I ++       A Y    D+  + +F   
Sbjct: 440 GTAEQWEEAQGAMKKILD------DIGLDYEIGIDE-----AAFYGPKLDIQIKNVFGK- 487

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK------DHYVQMGSYGIGAMRVV 325
            E+  ++ + I++     FG +Y           DGK       H   +G Y     R +
Sbjct: 488 -EDTLITIQ-IDMQIAKKFGMEYV--------DKDGKMKMPYIIHRTSVGCYE----RTL 533

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A +IE  + G   +W   +AP ++ ++ IK       D   ++   +  +G  V  D   
Sbjct: 534 ALLIE-KYAGVLPLW---LAPEQVRILPIKPEHN---DYAYELAEEMRDLGMRVEVDGED 586

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           + IG +   A     P   I+G   V D  V ++ R  G    M + + I
Sbjct: 587 DNIGPKIKQARFDRVPYMFIIGDNEVKDRTVTVRSRKEGELPAMPVADAI 636


>gi|225851210|ref|YP_002731444.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645886|gb|ACO04072.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 646

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G    + +    +EE  + G   +  P +    LW  SG  D Y + M    
Sbjct: 268 GLALWLPKGAVIRNEIETAWKEEHIKRGYQLVYTPHVGKEQLWQTSGHVDFYRENMFPEM 327

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++     P +     +I++S  +SY+ LP    ++   +R E      G+MR R F 
Sbjct: 328 MIEEEGYFVKPMNCPFHVEIYKSRQRSYKELPIKLAELGTVYRYERSGVLHGLMRVRGFT 387

Query: 157 MKDAY 161
             DA+
Sbjct: 388 QDDAH 392


>gi|116195310|ref|XP_001223467.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88180166|gb|EAQ87634.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 556

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADL 79
            +++L+  MI  +++  G +   P      + +    +E     G  E + P  L    L
Sbjct: 62  QEVVLKAEMIEYYTEISGFFIMRPATMYVWNTIRKWFQERIEEMGVEETNFPMFLSQKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LPF   Q 
Sbjct: 122 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPFRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +R+REFL ++ ++  LT + +     ++   Y  I+ +L
Sbjct: 182 NSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEQLAGEEVLQILELYAGIYEQL 234


>gi|298709965|emb|CBJ31687.1| Proline--tRNA ligase, central part [Ectocarpus siliculosus]
          Length = 492

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 118/315 (37%), Gaps = 68/315 (21%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E V+  ++R  I SYR+LP    Q     R E+R R  ++RS EFL ++ 
Sbjct: 204 EEPLVVRPTSETVIWTMYRKWIDSYRDLPLKLNQWANVVRWEMRTR-PLLRSAEFLWQEG 262

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++   T E +     +M V Y                                  T   +
Sbjct: 263 HTAHATKEEALSCAQEMLVEY---------------------------------STACRE 289

Query: 221 VFCSKDFMDFPIPSEN-TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                  M    P E     D+  ++ ++++   A  + TS    +             A
Sbjct: 290 TLALPTVMGVKSPKERFAGADETYTIEALMQNGWALQSGTSHFLGQNF-----------A 338

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R  EV    Y+ T             D K   V   S+G+   R++ A++ +  D  G+ 
Sbjct: 339 RAFEV----YYQT------------PDEKRELVWATSWGV-TTRLMGAMVMTHSDDFGLR 381

Query: 340 WPDSVAPFKISLINIKA----HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
            P +VAP ++ ++ I         +   A + +  +L   G  V  D+    + G+++  
Sbjct: 382 LPPAVAPKQVVIVPITKGPGEDTDLVNKAVDGVVDQLKAAGVRVKVDERPNMRPGAKYFQ 441

Query: 395 ADLLGFPLQVIVGSK 409
            +  G PL V +G K
Sbjct: 442 WEAKGVPLPVELGPK 456


>gi|332251678|ref|XP_003274973.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 3
           [Nomascus leucogenys]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 162/418 (38%), Gaps = 59/418 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 230 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 289

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 290 DNMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 348

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 349 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGD-- 404

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 405 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 441

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   ++ D++    + +   ++    F    +++L    T+   DG D    V +    +
Sbjct: 442 I---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAIL 490

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGC 377
           G++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   
Sbjct: 491 GSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMA 544

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D+  D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 545 DIDLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 601


>gi|269302597|gb|ACZ32697.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/435 (20%), Positives = 163/435 (37%), Gaps = 52/435 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD  +   KL L +    + S G+  + P G    D +    ++     G  E+
Sbjct: 230 IEEAKKRDHRVLGAKLDLFSQ--QESSPGMPFFHPRGMIVWDALIRYWKQLHTAAGYKEI 287

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P L +  LW  SG +D+Y   M  L  D  D A+   P +       +++ + SY+  
Sbjct: 288 LTPQLMNRQLWEVSGHWDNYKANMYTLQIDDEDYAI--KPMNCPGCMLYYKTRLHSYKEF 345

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +I    R E      G+MR R F   DA+ F LTPE  +     +      ++  
Sbjct: 346 PLRVAEIGHVHRQEASGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILQLVSTLYGT 404

Query: 188 LGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            GL+    +  R E   IG D   E              + D ++  +    T F  I+ 
Sbjct: 405 FGLEYHLELSTRPEKDTIGDDSLWEL-------------ATDALNRALVQSGTPF--IVR 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
                    A Y    D+H           K    R  + G I    +   ++ L  + T
Sbjct: 450 PGE-----GAFYGPKIDIH----------VKDAIQRTWQCGTIQLDMFLPERFELEYT-T 493

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            +G   K   V +     G++     ++  +  G+  +W   ++P ++ +I +       
Sbjct: 494 AQGT--KSVPVMLHRALFGSIERFLGILIENFKGRFPLW---LSPEQVRIITVADRHIPG 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+ + RL   G  V  DD  E +  +   A  +     + +G   ++++ + ++ R
Sbjct: 549 AKELEEAWKRL---GLVVTLDDSSESVSKKIRNAQNMQVNYMITLGDHEINENVLAVRTR 605

Query: 422 LTGIREDMSLEEVIN 436
              +  D+S+E  +N
Sbjct: 606 DNRVINDVSVERFLN 620


>gi|254470004|ref|ZP_05083408.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960315|gb|EEA95511.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 13/208 (6%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   ++   +   G+  W   G +   N+   +R  +
Sbjct: 230 KAYLHMLEE----AEKRDHRKLGREMDLYHFQEEGPGVVFWHHKGWQLFQNLTNYMRR-R 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E++ P +    LW  SG ++ Y + M      + +     P +      IF+  
Sbjct: 285 LEDDYQEVNAPQILDKALWETSGHWEWYRENMFATETEDHRVFAIKPMNCPGHVQIFKHG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R E      G+MR R F   DA+ F  T E      +K+   
Sbjct: 345 LKSYRDLPLRMAEFGAVSRYEPSGALHGLMRVRAFTQDDAHVF-CTEEQMAAECHKINDL 403

Query: 181 YLRIFHRLGLKSIPMRAESGP---IGGD 205
            + ++   G + I ++  + P   +G D
Sbjct: 404 IMSVYKDFGFEEIVVKLSTRPEKRVGSD 431


>gi|315501868|ref|YP_004080755.1| tRNA synthetase class ii (g h p and s) [Micromonospora sp. L5]
 gi|315408487|gb|ADU06604.1| tRNA synthetase class II (G H P and S) [Micromonospora sp. L5]
          Length = 404

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G  A   V   +RE + R G   +  P L   +L+  SG    +  +M   +
Sbjct: 23  GLPIWLPAGAAARHAVEEYVRELERRAGYQHVYSPPLGKRELFERSGHLGYFADDMFPPM 82

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM---- 150
           RL+   D   +  P        +FR+  +SYR LP    ++   +R E   R GV+    
Sbjct: 83  RLS--ADDEFVLRPALCPHHALVFRARGRSYRELPLRVAELGGMYRAE---RSGVLGGLS 137

Query: 151 RSREFLMKDAYSF 163
           R R   + DA++F
Sbjct: 138 RVRAISLNDAHNF 150


>gi|121535635|ref|ZP_01667441.1| threonyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305805|gb|EAX46741.1| threonyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 513

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 148/393 (37%), Gaps = 59/393 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G    + +    R+   + G  E+  P +    LW +SG +D Y +E +     + + 
Sbjct: 144 PKGMVIRNELENFWRKLHVKYGYQEIKTPIILHQRLWQQSGHWDHY-RENMYFTTIDGEG 202

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      ++R+   SYR+LP    ++ L  R EL     G+MR R F   DA+ 
Sbjct: 203 YAVKPMNCPGGILVYRTQHHSYRDLPLRTCELGLVHRHELSGALHGLMRVRSFTQDDAHI 262

Query: 163 FDLTP------EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           F L        +G    +N+++ ++   +H   L + P +A    +G D   E      T
Sbjct: 263 FMLPSQIKDEIQGVIDLFNEVYSTFGLTYH-AELSTKPEKA----MGSDEIWEVA----T 313

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +    +  M + I   +  F                Y    D H   L DS+     
Sbjct: 314 NALREALEERGMPYKINEGDGAF----------------YGPKIDFH---LRDSI----- 349

Query: 277 VSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESS 332
              R  + G I        K+ L    T+ G DG+ H  V +     G++     ++   
Sbjct: 350 --GRTWQCGTIQLDMLMPEKFDL----TYVGEDGQKHRPVMIHRVAYGSLERFIGILIEH 403

Query: 333 HDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + G    +P  +AP ++ ++ I   H    ++    + ++  +V      D   E+IG +
Sbjct: 404 YAGA---FPTWLAPVQVKILPITDRHVAYAQEVATLMRSKDIRVEV----DSRNEKIGYK 456

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                L   P  +IVG K      V ++ R  G
Sbjct: 457 IREGQLEKVPYMLIVGDKETETRTVAVRKRGQG 489


>gi|302410789|ref|XP_003003228.1| glycyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261358252|gb|EEY20680.1| glycyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 663

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 13/116 (11%)

Query: 316 SYGIGAMRVVAAVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDAC 365
           S+GIG  R++ ++IE S+  +G          + +P +VAP K+ ++ + A+ +  +   
Sbjct: 504 SFGIG--RILYSLIEHSYWTRGSDGGDEARSVLSFPPTVAPTKVLIVPLSAN-KAFKPFI 560

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +KI  +L KVG     DD    IG +++  D LG PL + +  + V DS   ++ R
Sbjct: 561 QKISQKLRKVGVSSRIDDSSATIGKRYSRNDELGTPLGITIDFQSVQDSTYTLRDR 616



 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           + +PF    I   +R+E+ PR G++R REFLM +   F + PEG K
Sbjct: 238 QQMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHF-VDPEGGK 282


>gi|260424668|ref|ZP_05732876.2| threonine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402758|gb|EEW96305.1| threonine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 647

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 151/401 (37%), Gaps = 53/401 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+   G   + P G    + + A  RE     G  E+  P + S  LW++SG +D Y KE
Sbjct: 268 HEEGPGFPFFHPKGMVIRNELIAYERELFREFGYEEIMTPIILSKKLWLQSGHWDHY-KE 326

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +     +++     P +       ++++  SYR LP    +  +  R EL     G+ R
Sbjct: 327 NMYFTQIDEEDYAVKPMNCPGGILYYKTNQHSYRELPKRVGEFGIVHRHELHGALHGLFR 386

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F +T +  K    K    Y +++   GL                  E+ 
Sbjct: 387 VRVFTQDDAHIF-MTQDQMKDEVIKTMEMYRKLYSVFGL------------------EYH 427

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNEKLF 268
           V   T       S++  +    S N       +L   VE    PY         +  KL 
Sbjct: 428 VELSTRPENSMGSEELWEI---STN-------ALRDAVEAAGVPYVINEGDGAFYGPKLD 477

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAM-RV 324
             +   K    R  + G I        LP      + G DG+ H  V +   G G++ R 
Sbjct: 478 FHI---KDCLGRTWQCGTI---QMDMQLPERFDVNYVGEDGEKHRAVMLHRAGYGSLERF 531

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +  +IE         +P  +AP ++ ++ + + H    R   + + A   +V  +   D 
Sbjct: 532 IGILIEHFAGA----FPSWIAPVQVKVVPVTEKHMNYARSVADALSASNVRVEIEEGNDT 587

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G +I      A +   P  ++VG K ++   V ++ R  G
Sbjct: 588 LGYKIRK----AQMEKVPYTLVVGDKEMNGHTVSVRSRKNG 624


>gi|253567818|ref|ZP_04845229.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251841891|gb|EES69971.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 556

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 260 GKGLPMWLPKGTALRLRLQEFLRRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQ 319

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   Y   P +     +I+++  +SY++LP    +     R E      G+ R 
Sbjct: 320 PIHTPEEGEEYFLKPMNCPHHCEIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRV 379

Query: 153 REFLMKDAYSF 163
           R F   DA+ F
Sbjct: 380 RSFTQDDAHIF 390


>gi|145593854|ref|YP_001158151.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|145303191|gb|ABP53773.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 468

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E V+ +     + SYR+LP    Q     R ELRPR   +R+ EFL ++ ++ 
Sbjct: 104 VVVRPTSETVIGEFMAKWVDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQEGHTA 162

Query: 164 DLTPEGSK--------HSYNKMFVSYLRIFHRLGLKS 192
             T E ++         +Y  + V+ L I  ++GLK+
Sbjct: 163 HTTREDARAYARRILHEAYEDLMVNVLAIPVQVGLKT 199


>gi|123239921|emb|CAM27479.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 163

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    D    S +LML+ G+I   S G Y  +P   +A++ +  +I +E    G  +++
Sbjct: 86  LEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKIN 145

Query: 71  VPTLQSADLWVESGRYD 87
           +P+L  A+LW  + R+D
Sbjct: 146 MPSLSPAELWRATSRWD 162


>gi|39996615|ref|NP_952566.1| threonyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|73919793|sp|Q74D04|SYT_GEOSL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39983496|gb|AAR34889.1| threonyl-tRNA synthetase [Geobacter sulfurreducens PCA]
          Length = 636

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   W P G      +    R E  + G   +  P +   +LW  SG YD+Y +E +   
Sbjct: 263 GFVIWHPKGAMLRTLLEDFERREHLKRGYDIVVGPQILKTELWQRSGHYDNY-RENMYFT 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +     P +      I++S ++SYR+LP  F+++    R E      G++R R F 
Sbjct: 322 EVEGQGFGIKPMNCLSHMMIYKSQLRSYRDLPLRFFELGTVHRHERAGVLHGLLRVRCFT 381

Query: 157 MKDAYSFDLTPE 168
             DA+    TPE
Sbjct: 382 QDDAHIL-CTPE 392


>gi|322386847|ref|ZP_08060471.1| serine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321269129|gb|EFX52065.1| serine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 446

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 175 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 220

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 221 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 277

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 278 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 335

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 336 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 366


>gi|57237210|ref|YP_178222.1| threonyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|73919779|sp|Q5HWW3|SYT_CAMJR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57166014|gb|AAW34793.1| threonyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|315057643|gb|ADT71972.1| Threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 602

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/448 (20%), Positives = 175/448 (39%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM-FV-S 180
           SYR+LP  F++  +  R E      G+ R REF   DA+ F +  +  +     + FV +
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDN 372

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +++F                   D S+E  +   T   +     +  +    +     D
Sbjct: 373 LMKLF-------------------DFSYEMEI--STKPEKAIGDDEIWEVATKALKEALD 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+   K+ D+L        R  + G I      ++LP   
Sbjct: 412 EQGLKYGIDEGGGAFYGPKIDI---KITDAL-------KRKWQCGTI---QVDFNLPSRF 458

Query: 301 TFKGADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
             +  D    K   V +    +G+      ++     G+   +P  +AP  + ++ I +A
Sbjct: 459 KLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGE---FPFFIAPTAVGIVPIGEA 515

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H    ++    I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V
Sbjct: 516 HIAYAKE----IQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSV 571

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R    ++++SL+E I     + S 
Sbjct: 572 ALRDRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|307634865|gb|ADI84351.2| threonyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 645

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   W P G      +    R E  + G   +  P +   +LW  SG YD+Y +E +   
Sbjct: 272 GFVIWHPKGAMLRTLLEDFERREHLKRGYDIVVGPQILKTELWQRSGHYDNY-RENMYFT 330

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +     P +      I++S ++SYR+LP  F+++    R E      G++R R F 
Sbjct: 331 EVEGQGFGIKPMNCLSHMMIYKSQLRSYRDLPLRFFELGTVHRHERAGVLHGLLRVRCFT 390

Query: 157 MKDAYSFDLTPE 168
             DA+    TPE
Sbjct: 391 QDDAHIL-CTPE 401


>gi|306830557|ref|ZP_07463724.1| serine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304427275|gb|EFM30380.1| serine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD +D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD-SDYVLI--PTAEVPLTNYYRGEILDGKELPVYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +LGL 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPETSYDELEKMVANAENILQKLGL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|296805896|ref|XP_002843772.1| glycyl-tRNA synthetase 1 [Arthroderma otae CBS 113480]
 gi|238845074|gb|EEQ34736.1| glycyl-tRNA synthetase 1 [Arthroderma otae CBS 113480]
          Length = 685

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G    ++  +E++ + + +  P SVAP K+ L+ + +H Q  R   + + ++L  +G  
Sbjct: 546 VGINSGLSISLEANINVQVLSLPPSVAPTKVLLVPLSSH-QSFRPIIKNLSSQLRSLGIS 604

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              DD    IG ++A  D LG P  + V    V DS + ++ R T  +   + EE+I+
Sbjct: 605 NRIDDSNASIGKRYARNDELGTPFGITVDFDTVKDSTITLRERDTTKQVRGTTEEIIS 662



 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR  ++   N +PF    +   +R+E+ PR G++R REFLM +   F     G KH    
Sbjct: 243 FRKMLEYNNNTMPFASASVGKSYRNEISPRAGLLRVREFLMAEIEHFVDPDNGKKHER-- 300

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
                   F  +    +P   +S  + G  + +++ L    E  +
Sbjct: 301 --------FENVQHLELPFLDQSTQLSGQTTAKYLSLGKAVEKNI 337


>gi|116627246|ref|YP_819865.1| seryl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|122268151|sp|Q03MA3|SYS_STRTD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116100523|gb|ABJ65669.1| seryl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  EM  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEMITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D  D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFEL-DGTDYVLI--PTAEVPLTNYYRGEILDGKELPIYFTAL 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPEDSYDELEKMVVNAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|332251676|ref|XP_003274972.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 2
           [Nomascus leucogenys]
          Length = 756

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/416 (20%), Positives = 162/416 (38%), Gaps = 59/416 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y   
Sbjct: 369 HELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSDN 428

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 429 MFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTR 487

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHE 209
            R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD    
Sbjct: 488 VRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGD---- 541

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVH 263
            I + D  E Q+             EN       SLN   E+W       A Y    D+ 
Sbjct: 542 -IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKIDI- 579

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGA 321
             ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G+
Sbjct: 580 --QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAILGS 629

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCDV 379
           +  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D+
Sbjct: 630 VERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMADI 683

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 684 DLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 738


>gi|326476791|gb|EGE00801.1| threonyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 753

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 10  ILQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +LQE+ +  E A  +  L+ G         + S G    LP G K  + +  ++R E  +
Sbjct: 301 LLQEHLKFLEEAEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRK 360

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +
Sbjct: 361 RGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGHRER 419

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP       +  R+E      G+ R R+F   D + F
Sbjct: 420 SYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 460


>gi|258592606|emb|CBE68915.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS) [NC10
           bacterium 'Dutch sediment']
          Length = 680

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +  + RE+  + G   +  P +  A LW  SG  D Y + M    
Sbjct: 290 GLVLWHPKGALVRKLIEDLWREQHLKNGYDLVYTPHVGRATLWETSGHLDFYQEFMYPRM 349

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +         P +      +F+S + SYR LP  F ++   +R E      G++R R F 
Sbjct: 350 EMEGNDYYVKPMNCPFHIKLFQSKVHSYRELPVRFAELGTVYRFERAGVLHGLLRVRGFT 409

Query: 157 MKDAYSFDLTPE 168
             DA+ F  TP+
Sbjct: 410 QDDAHIF-CTPQ 420


>gi|332796370|ref|YP_004457870.1| glycyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694105|gb|AEE93572.1| glycyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 570

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP+++++  +   D++   A E IY+++ K   D  +DD G  IG ++A AD +G 
Sbjct: 457 PREIAPYEVAVFPLLERDELISRARE-IYSKV-KEKFDAIFDDSG-SIGKRYARADEIGI 513

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P  + V  + + D+ V I+ R T  +  +  EE+IN     FS
Sbjct: 514 PYAITVDPQTLQDNTVTIRDRDTWNQIRVKEEELINTLEKLFS 556


>gi|253580110|ref|ZP_04857377.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848629|gb|EES76592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 653

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G   +  +   I +E+ + G I    P +  +DL+  SG +D Y + M  L
Sbjct: 259 QGLPLIMPNGVIMMQELQRWIEDEETKRGYIRTKTPLMAKSDLYKISGHWDHYKEGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D      ++   P        ++++   SYR+LP  + +    FR+E      G+ R R
Sbjct: 319 GDEETDKEVFALRPMTCPFQYYVYKAEQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVR 378

Query: 154 EFLMKDAY 161
           +F + + +
Sbjct: 379 QFTISEGH 386


>gi|261203861|ref|XP_002629144.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239586929|gb|EEQ69572.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 747

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 8/160 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K  + +  ++R E  + 
Sbjct: 294 MQEHLKFLEEAEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQKLLRSEYLKR 353

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 354 GYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGHKERS 412

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP       +  R+E      G+ R R+F   D + F
Sbjct: 413 YRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 452


>gi|119358269|ref|YP_912913.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355618|gb|ABL66489.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 675

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G    + +   ++EEQ + G + +  P + + +L+  SG Y  Y       L
Sbjct: 288 GLPVWLPKGAIIRNELETFLKEEQRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPL 347

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D N K   Y   P +      I+   ++SYR+LP    +    +R E      G++R
Sbjct: 348 TYHDENGKQEQYLLKPMNCPHHHLIYNVKLRSYRDLPIRLAEFGTVYRHEQSGELNGLVR 407

Query: 152 SREFLMKDAYSF 163
           +R F   D++ +
Sbjct: 408 ARGFTQDDSHIY 419


>gi|228476564|ref|ZP_04061246.1| seryl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228251759|gb|EEK10824.1| seryl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  EM  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGAKLERAIYNFM------LD--------EHAKEGYTEMITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D  D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFEL-DGTDYVLI--PTAEVPLTNYYRGEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPEDSYDELEKMVVNAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|327356150|gb|EGE85007.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 770

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 8/160 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K  + +  ++R E  + 
Sbjct: 317 MQEHLKFLEEAEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQKLLRSEYLKR 376

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 377 GYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGHKERS 435

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP       +  R+E      G+ R R+F   D + F
Sbjct: 436 YRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 475


>gi|306832797|ref|ZP_07465932.1| serine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304425032|gb|EFM28163.1| serine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 435

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 164 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 209

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD +D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 210 NHDSMFGTGQYPKFKEDTFELAD-SDYVLI--PTAEVPLTNYYRGEILDGKELPVYFTAM 266

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +LGL 
Sbjct: 267 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPETSYDELEKMVANAENILQKLGL- 324

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 325 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 355


>gi|325977535|ref|YP_004287251.1| seryl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177463|emb|CBZ47507.1| serS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD +D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD-SDYVLI--PTAEVPLTNYYRGEILDGKELPVYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +LGL 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPETSYDELEKMVANAENILQKLGL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|170095495|ref|XP_001878968.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646272|gb|EDR10518.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 721

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G +  +++  ++R E  + G  E+  P + ++ LW  SG + +Y  +M  
Sbjct: 335 SPGSCFFLPHGTRIYNSLVELMRSEYFKRGYQEVISPNMYNSKLWETSGHWQNYKDDMF- 393

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L D   +     P +      IF S  +SY+ LP    +  +  R+E      G+ R R 
Sbjct: 394 LLDVEKEKWALKPMNCPGHCLIFDSRDRSYKELPIRMAEFGIIHRNEASGALTGLTRVRR 453

Query: 155 FLMKDAYSF 163
           F+  D + F
Sbjct: 454 FVQDDTHVF 462


>gi|68071553|ref|XP_677690.1| aminoacyl-tRNA synthetase [Plasmodium berghei strain ANKA]
 gi|56497903|emb|CAH98595.1| Bi-functional aminoacyl-tRNA synthetase, putative [Plasmodium
           berghei]
          Length = 324

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S R I+     Y GT ++      F+       +V   S+G    R +  +I    D KG
Sbjct: 48  SGRAIQAATSHYLGTNFAKMFKIEFEDEQENKQFVHQTSWGC-TTRSIGVMIMIHSDNKG 106

Query: 338 IIWPDSVAPFKISLINI--KAHDQV-----CRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +I P +VA +K  ++ I  K  D+      C+D  EK+    +++ C +F D      G 
Sbjct: 107 LILPPNVAKYKAVIVPILYKNSDETAIFNYCKDI-EKVLKN-AQINC-IFDDRDLYSPGY 163

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +F   +L G P+++ VG K + ++      R    + ++  E V+
Sbjct: 164 KFNHWELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKESVL 208


>gi|322517430|ref|ZP_08070303.1| serine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322123912|gb|EFX95471.1| serine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 446

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  EM  P + 
Sbjct: 175 RGAKVTGSRFLFYKGLGAKLERAIYNFM------LD--------EHAKEGYTEMITPYMV 220

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D  D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 221 NHDSMFGTGQYPKFKEDTFEL-DGTDYVLI--PTAEVPLTNYYRGEILDGKELPIYFTAM 277

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 278 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPESSYDELEKMVVNAENILQKLNL- 335

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 336 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 366


>gi|301626888|ref|XP_002942619.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 683

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   I+ E  + G  E+  P + +  LW  SG ++ YG
Sbjct: 342 FFHDLSPGSCFFLPRGAHIYNVLIDFIKSEYRKRGFTEVITPNMYNNKLWETSGHWEHYG 401

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           K M       ++     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 402 KNMFSFT-VEEETFSLKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGTLSGL 460

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 461 TRVRRFQQDDAHIF 474


>gi|239608840|gb|EEQ85827.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 747

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 8/160 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K  + +  ++R E  + 
Sbjct: 294 MQEHLKFLEEAEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQKLLRSEYLKR 353

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 354 GYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGHKERS 412

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           YR LP       +  R+E      G+ R R+F   D + F
Sbjct: 413 YRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF 452


>gi|288904563|ref|YP_003429784.1| seryl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|288731288|emb|CBI12838.1| seryl-tRNA synthetase [Streptococcus gallolyticus UCN34]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD +D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD-SDYVLI--PTAEVPLTNYYRGEILDGKELPVYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +LGL 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPETSYDELEKMVANAENILQKLGL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|148284343|ref|YP_001248433.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|166225471|sp|A5CD12|SYT_ORITB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146739782|emb|CAM79649.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           ++G+  W   G      +   I  +  R G IE++ P + S  LW +SG ++ + + M  
Sbjct: 260 AQGMPFWHDKGWTIFKIIKNYISCQIQRAGYIEVNTPMVLSQKLWEKSGHWEKFRENMFT 319

Query: 96  L------ADRN--------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           L       D N          A+   P +      IF   IKSYR+LP    +     R 
Sbjct: 320 LDTNVAEKDHNLIKDSIETKCALALKPMNCPGHIQIFNYTIKSYRDLPLRMAEFGSCHRY 379

Query: 142 ELR-PRFGVMRSREFLMKDAYSF 163
           E     +G+MR R F+  DA+ F
Sbjct: 380 EPSGALYGLMRVRSFVQDDAHIF 402


>gi|332265240|ref|XP_003281636.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           1 [Nomascus leucogenys]
          Length = 793

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 406 HDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 465

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 466 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 524

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 525 VRRFQQDDAHIF 536


>gi|254692865|ref|NP_082207.2| threonyl-tRNA synthetase, mitochondrial isoform 1 [Mus musculus]
 gi|118597388|sp|Q3UQ84|SYTM_MOUSE RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|74216488|dbj|BAE25159.1| unnamed protein product [Mus musculus]
 gi|187956085|gb|AAI47502.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
          Length = 723

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 148/409 (36%), Gaps = 53/409 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IR E  R G  E+  PTL S  LW +SG ++ Y 
Sbjct: 318 FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYR 377

Query: 91  KEMLRL----------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            +M  L                A      +   P +      +F    +S+R LP     
Sbjct: 378 ADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVRLAD 437

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                R E      G+ R   F   DA+ F   P   +       + +LR  + +   S 
Sbjct: 438 FGALHRAEASGSLGGLTRLWRFQQDDAHIF-CAPHQLEAEIQGC-LDFLRCVYSVLGFSF 495

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   + P G      F+     GE +++   D  +  +      F +   LN       
Sbjct: 496 HLALSTRPPG------FL-----GEPRLW---DQAEQVLQQALEKFGEPWDLNPGD---G 538

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DVH   L D+L    +     ++      F  +Y  P       A   +  V 
Sbjct: 539 AFYGPKIDVH---LHDALGRPHQCGTIQLDFQLPLRFDLQYKGP-------AGTPECPVL 588

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  +  V+  S  GK   WP  ++P ++ +I ++   +   +   ++   L 
Sbjct: 589 IHRAVLGSVERLLGVLAESCGGK---WPLWLSPLQVVVIPVRTEQE---EYARQVQQCLQ 642

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G     D D G  +  +   A L  +  Q +VG +  S   V ++ R
Sbjct: 643 AAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTVNVRTR 691


>gi|86153772|ref|ZP_01071975.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842733|gb|EAQ59945.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 602

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP  F++  +  R E      G+ R REF   DA+ F
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIF 353


>gi|227485697|ref|ZP_03916013.1| threonine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236252|gb|EEI86267.1| threonine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/423 (21%), Positives = 165/423 (39%), Gaps = 52/423 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+   G   + P G   ++ +    R+  + +G  E+  P + + DLW  SG +D Y + 
Sbjct: 257 HEEGPGFPFFHPNGMILMNELLGWWRDVLDHSGYGEIKTPLILNEDLWHRSGHWDHYKEN 316

Query: 93  M-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           M     D  D A+        V+T   R H  SYR+LP    +     R EL     G+ 
Sbjct: 317 MYFTKIDDEDYAIKPMNCPGSVLTYASRQH--SYRDLPIRLAEFGQVHRHELSGTLHGLF 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHE 209
           R R F   DA+ + L  +  +  Y  + ++ L ++   G K ++ +        GD+   
Sbjct: 375 RVRTFTQDDAHVYCLPSQIKEEVYKMIDLADL-LYSTFGFKYTMELSTRPDDYMGDIKD- 432

Query: 210 FIVLADTGETQVFCSKD--FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                D  E Q+  + +   +D+ I   +  F                Y    D H   L
Sbjct: 433 ----WDFAEEQLKLALEERGIDYQINPGDGAF----------------YGPKIDFH---L 469

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRV 324
            D+       + R  + G I      + LP +   +  D    K   V +    +G++  
Sbjct: 470 LDA-------AKREWQCGTI---QLDFQLPANFELEYIDENGEKKRPVMLHRALLGSVER 519

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              V+     G+  +W   + P ++ +I +   D+   D   +I   + K G  V  D+ 
Sbjct: 520 FIGVLTEHFAGRFPLW---INPRQVEVIPVA--DRFA-DKAHEIAKEIEKAGFRVGVDER 573

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI-NYASHRFS 443
            E +G +   A ++     ++VG K +    + +++R     +D++L + I   +  R S
Sbjct: 574 SEGVGYKIRSAQMMRTNYMLVVGDKEIESGLLTVRNRDGEETKDVNLADFIAKISEERDS 633

Query: 444 NNR 446
            +R
Sbjct: 634 KSR 636


>gi|197301753|ref|ZP_03166823.1| hypothetical protein RUMLAC_00479 [Ruminococcus lactaris ATCC
           29176]
 gi|197299193|gb|EDY33723.1| hypothetical protein RUMLAC_00479 [Ruminococcus lactaris ATCC
           29176]
          Length = 655

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+  + P G K +  +   I + E    G +    P +  +DL+  SG +D Y + M  
Sbjct: 259 QGLPLFPPKGTKMIMKLQRWIEDLEDKEWGYVRTRTPLMAKSDLYKISGHWDHYKEGMFV 318

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      ++   P        ++++  KSYR+LP+   +    FR E      G+ R 
Sbjct: 319 LGDEEKDKEVFALRPMTCPFQYYVYKNTQKSYRDLPYRMSETSTLFRSEDSGEMHGLTRV 378

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           R+F + +A++  + P+ ++      F     +   LGL+
Sbjct: 379 RQFTITEAHNV-IRPDQAEEELKNCFDLAYYVLSTLGLQ 416



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEK 367
           H   MG Y     R +A +IE  + GK   W  P+ V    IS    +  ++VC      
Sbjct: 518 HRTSMGCYE----RTLAWLIEK-YAGKFPTWLCPEQVRVLPISEKYEEYANKVC------ 566

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A L K   DV  D+  E+IG +   A L   P  ++VG +  +D  V ++ R  G   
Sbjct: 567 --AELKKNDIDVTVDNRSEKIGFKIREARLDKLPYMLVVGQQEEADGTVSVRSRFAGNEG 624

Query: 428 DMSLEEVIN 436
             SL+E I+
Sbjct: 625 TKSLDEFID 633


>gi|127512960|ref|YP_001094157.1| threonyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166225499|sp|A3QEK0|SYT_SHELP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126638255|gb|ABO23898.1| threonyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 642

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR++  +    E+  P +    LW  SG +D Y +
Sbjct: 256 MQEEAPGMVFWHNDGWSLFLELERFIRQKLGQYTYQEVKGPLMMDRVLWERSGHWDKYSE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTHSENREYAV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +   +         +   G   I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQVQQEVSGCIKMVYDTYATFGFHDIVVKLSTRPEKRIGDD 431


>gi|12847728|dbj|BAB27683.1| unnamed protein product [Mus musculus]
          Length = 723

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 148/409 (36%), Gaps = 53/409 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IR E  R G  E+  PTL S  LW +SG ++ Y 
Sbjct: 318 FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYR 377

Query: 91  KEMLRL----------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            +M  L                A      +   P +      +F    +S+R LP     
Sbjct: 378 ADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVRLAD 437

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                R E      G+ R   F   DA+ F   P   +       + +LR  + +   S 
Sbjct: 438 FGALHRAEASGSLGGLTRLWRFQQDDAHIF-CAPHQLEAEIQGC-LDFLRCVYSVLGFSF 495

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   + P G      F+     GE +++   D  +  +      F +   LN       
Sbjct: 496 HLALSTRPPG------FL-----GEPRLW---DQAEQVLQQALEKFGEPWDLNPGD---G 538

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DVH   L D+L    +     ++      F  +Y  P       A   +  V 
Sbjct: 539 AFYGPKIDVH---LHDALGRPHQCGTIQLDFQLPLRFDLQYKGP-------AGTPECPVL 588

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  +  V+  S  GK   WP  ++P ++ +I ++   +   +   ++   L 
Sbjct: 589 IHRAVLGSVERLLGVLAESCGGK---WPLWLSPLQVVVIPVRTEQE---EYARQVQQCLQ 642

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G     D D G  +  +   A L  +  Q +VG +  S   V ++ R
Sbjct: 643 AAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTVNVRTR 691


>gi|219520186|gb|AAI43944.1| TARSL2 protein [Homo sapiens]
          Length = 766

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y +
Sbjct: 414 FHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSE 473

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       D      P +      +F    +S+R +P  F    +  R+EL     G+ 
Sbjct: 474 NMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLT 532

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 533 RVRRFQQDDAHIF 545


>gi|114659237|ref|XP_510628.2| PREDICTED: threonyl-tRNA synthetase-like 2 [Pan troglodytes]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 415 HDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 474

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 475 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 533

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 534 VRRFQQDDAHIF 545


>gi|309811262|ref|ZP_07705053.1| threonine--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308434802|gb|EFP58643.1| threonine--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 665

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 2/156 (1%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           +R      G   +  P +   DL+  SG    Y   M    D + +       +  +  +
Sbjct: 296 VRRRHIEEGFSYVGTPHIAKEDLFYTSGHLPYYADGMFPPLDVDGQNYRLKAMNCPMHNE 355

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  F++    +RDE      G+ R R     D++S+ +TPE +     
Sbjct: 356 IFRSRGRSYRELPLRFFEFGTVYRDEKSGVLSGLTRVRMITQDDSHSY-VTPEQAPGEIK 414

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +    L +    G+    +   +  + GD   +FI
Sbjct: 415 HLLDFILGLLRDFGMNDFYLELSTRDVDGDKKDKFI 450


>gi|332844839|ref|XP_003314929.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           3 [Pan troglodytes]
          Length = 766

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y 
Sbjct: 413 FFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYS 472

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       D   +  P +      +F    +S+R +P  F    +  R+EL     G+
Sbjct: 473 ENMFTFEIEKDTFAL-KPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGL 531

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 532 TRVRRFQQDDAHIF 545


>gi|332251674|ref|XP_003274971.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 1
           [Nomascus leucogenys]
          Length = 723

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/416 (20%), Positives = 162/416 (38%), Gaps = 59/416 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y   
Sbjct: 336 HELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSDN 395

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 396 MFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTR 454

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHE 209
            R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD    
Sbjct: 455 VRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGD---- 508

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVH 263
            I + D  E Q+             EN       SLN   E+W       A Y    D+ 
Sbjct: 509 -IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKIDI- 546

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGA 321
             ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G+
Sbjct: 547 --QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAILGS 596

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCDV 379
           +  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D+
Sbjct: 597 VERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMADI 650

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 651 DLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 705


>gi|322379034|ref|ZP_08053437.1| threonyl-tRNA synthetase [Helicobacter suis HS1]
 gi|322380800|ref|ZP_08054906.1| threonyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321146804|gb|EFX41598.1| threonyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321148526|gb|EFX43023.1| threonyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  ++ +   + G   +  P +  + LW +SG Y +Y KE +   
Sbjct: 227 GLPIWLPNGMRLRVRLENLLSKALLQYGYEPVRGPEILKSSLWQKSGHYQNY-KENMYFT 285

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             ++      P +      ++   ++SYR LP  FY+  +  R E      G++R REF 
Sbjct: 286 TIDEVEYGIKPMNCVGHIKVYEHALRSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFT 345

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 346 QDDAHIF 352



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G+     A++   + G    +P  +AP +I+L+ + + DQ+  +  ++IY +L+K G  
Sbjct: 479 LGSFERFIAILTEHYSGN---YPFFIAPVQIALVPV-SMDQL--EYAQEIYHKLNKRGFF 532

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           V   D  E +  +    +    P  V+VG + V+   + I+ R  G +  M  EE
Sbjct: 533 VCMADKNETLSKRIRSLEKQKIPFIVVVGKEEVAQGSLAIRDRALGKQYTMLQEE 587


>gi|312277730|gb|ADQ62387.1| Seryl-tRNA synthetase [Streptococcus thermophilus ND03]
          Length = 425

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  EM  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEMITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D  D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFEL-DGTDYVLI--PTAEVPLTNYYRGEILDGKELPIYFTAL 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPEDSYDELEKMVVNAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|19114946|ref|NP_594034.1| mitochondrial threonine-tRNA ligase [Schizosaccharomyces pombe
           972h-]
 gi|3183172|sp|O13969|SYTM_SCHPO RecName: Full=Probable threonyl-tRNA synthetase, mitochondrial;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           Flags: Precursor
 gi|2330792|emb|CAB11266.1| mitochondrial threonine-tRNA ligase [Schizosaccharomyces pombe]
          Length = 473

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 12/190 (6%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           IA+ + +  T ++   + G   +LP G +  + +   +R +    G  E+  P +   DL
Sbjct: 51  IAARQKLYTTSIL---TPGSIFFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFKKDL 107

Query: 80  WVESGRYDSYGKEMLRLADRND-----KAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTF 132
           W +SG + +Y KE+ R+ +  +         YG  P +      ++ S  +SY+ LP  F
Sbjct: 108 WEKSGHWQNYEKEIFRVEESRNVEDEHSNATYGLKPMNCPGHCIVYASTERSYKELPLRF 167

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
                  R+E      G+ R R F   D + F  +PE  K           +++  LG+ 
Sbjct: 168 ADFSPLHRNEASGALSGLTRLRCFHQDDGHIF-CSPESIKDEIKNTLTFVKQVYSLLGMN 226

Query: 192 SIPMRAESGP 201
            + +   + P
Sbjct: 227 KLKLYLSTRP 236


>gi|254692871|ref|NP_001157090.1| threonyl-tRNA synthetase, mitochondrial isoform 3 [Mus musculus]
          Length = 642

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 148/409 (36%), Gaps = 53/409 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IR E  R G  E+  PTL S  LW +SG ++ Y 
Sbjct: 237 FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYR 296

Query: 91  KEMLRL----------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            +M  L                A      +   P +      +F    +S+R LP     
Sbjct: 297 ADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVRLAD 356

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                R E      G+ R   F   DA+ F   P   +       + +LR  + +   S 
Sbjct: 357 FGALHRAEASGSLGGLTRLWRFQQDDAHIF-CAPHQLEAEIQGC-LDFLRCVYSVLGFSF 414

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   + P G      F+     GE +++   D  +  +      F +   LN       
Sbjct: 415 HLALSTRPPG------FL-----GEPRLW---DQAEQVLQQALEKFGEPWDLNPGD---G 457

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DVH   L D+L    +     ++      F  +Y  P       A   +  V 
Sbjct: 458 AFYGPKIDVH---LHDALGRPHQCGTIQLDFQLPLRFDLQYKGP-------AGTPECPVL 507

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  +  V+  S  GK   WP  ++P ++ +I ++   +   +   ++   L 
Sbjct: 508 IHRAVLGSVERLLGVLAESCGGK---WPLWLSPLQVVVIPVRTEQE---EYARQVQQCLQ 561

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G     D D G  +  +   A L  +  Q +VG +  S   V ++ R
Sbjct: 562 AAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTVNVRTR 610


>gi|121612820|ref|YP_999926.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166223331|sp|A1VXT5|SYT_CAMJJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87250382|gb|EAQ73340.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 602

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP  F++  +  R E      G+ R REF   DA+ F
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIF 353


>gi|297664841|ref|XP_002810829.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 139

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYAR 371
           MG YG+G  R++AA IE       + WP  +AP++  LI  K  + ++   +   ++Y  
Sbjct: 1   MGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELIGQLYDH 60

Query: 372 LS----KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           ++    ++  +V  DD     IG++   A+  G+P  +I G + + D
Sbjct: 61  ITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALED 107


>gi|256830760|ref|YP_003159488.1| threonyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256579936|gb|ACU91072.1| threonyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 644

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 145/388 (37%), Gaps = 47/388 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +   + +E  R G   +  P +   DLW  SG Y +Y +E +   
Sbjct: 260 GMAYWHPKGGLVRTILEDFVNKEMIRRGYGIVRTPQILKRDLWETSGHYANY-RENMYFT 318

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++      P +      I+ +  +SYR+LP   ++  +  R EL     G+MR R+F 
Sbjct: 319 EIDEVPYGVKPMNCVAHMLIYNTSQRSYRDLPVRLFEFGVVHRHELSGVLHGLMRVRQFT 378

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVL 213
             DA+     P+        +      +    G +    I  R E   IG D   E    
Sbjct: 379 QDDAHII-CRPDQLLDEIKGVMTWIQDLMGVFGFEYSMEISTRPEKS-IGSDADWE---- 432

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                + +  +   M+ P               +I E   A Y    DV   KL D L  
Sbjct: 433 --RATSALMDAMGQMELPY--------------TINEGDGAFYGPKIDV---KLRDCLGR 473

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESS 332
             + S   ++    F    ++ L     + G DG+ H   M    I G++     ++   
Sbjct: 474 QWQCSTIQVD----FTLPDRFDL----LYVGEDGERHRPVMVHRAIMGSVERFIGILTEH 525

Query: 333 HDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             G    +P  +AP +  ++ +   HD+  R    K    L + G  V  D   E++G +
Sbjct: 526 FAGA---FPAWLAPVQARILTVTDNHDEFAR----KCQDALQREGVRVELDLRNEKLGYK 578

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              A +   P  +++G + V  + V ++
Sbjct: 579 VREAQMEKVPYALVIGDQEVEQACVNVR 606


>gi|254172046|ref|ZP_04878722.1| threonyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033942|gb|EEB74768.1| threonyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 624

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 131/331 (39%), Gaps = 50/331 (15%)

Query: 117 IFRSHIKSYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           I +  I SYR+LP   Y++ +  FR E      G+ R R F M D ++     + +   +
Sbjct: 303 IKKDAIISYRHLPLRMYELTRYSFRREKSGELSGLRRLRAFTMPDMHTVAKDLKQAMDEF 362

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            K +   + +   +GL                        D  E  +  ++DF +     
Sbjct: 363 KKQYKLSMEVLRGVGLTP----------------------DDYEVAIRFTRDFWE----- 395

Query: 235 ENTDF----DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           EN DF      II    ++E W   +            D+L +   +S   I+V +   F
Sbjct: 396 ENRDFIVELAKIIGKPVLIEMWDQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERF 455

Query: 291 GTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSV 344
           G         T+   +GK+ Y + +     GA+ RV+ A++E        GK   +P  +
Sbjct: 456 GI--------TYYDEEGKERYPLILHCSPSGAIERVMYAILEKQAKLQAQGKKPAFPLWL 507

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ +I +   D V  D    +  +L      V  DD  +++  +   A+    P  +
Sbjct: 508 SPIQVRVIPV--SDDVM-DYALYVAGKLEGAKIRVDVDDTNDRLNKKIRKAEKEWIPYII 564

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +VG      + V ++ R  G + +M LE++I
Sbjct: 565 VVGKNEKEQNTVTVRRREDGKQLEMQLEDLI 595


>gi|73748565|ref|YP_307804.1| threonyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|289432591|ref|YP_003462464.1| threonyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|123732511|sp|Q3ZXB5|SYT_DEHSC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73660281|emb|CAI82888.1| threonyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|288946311|gb|ADC74008.1| threonyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 582

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 32  IHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +HQ    G+ +WLP G      +    ++E  + G   +  P +   DLW  SG +  Y 
Sbjct: 198 LHQEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKRGYDLVYTPHIAKVDLWKTSGHWGFYR 257

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           + M    D + +  +  P +      +F++  +SY+ LP    ++   +R E   R GV+
Sbjct: 258 ENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSYKELPIRMAELGTVYRYE---RSGVL 314

Query: 151 ----RSREFLMKDAYSFDL 165
               R R F   DA+ F L
Sbjct: 315 HGLSRVRGFTQDDAHIFCL 333


>gi|221056250|ref|XP_002259263.1| threonine--trna ligase [Plasmodium knowlesi strain H]
 gi|193809334|emb|CAQ40036.1| threonine--trna ligase, putative [Plasmodium knowlesi strain H]
          Length = 888

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G K  + +   IR E       E+  P + S DLW  SG Y +Y K+ + 
Sbjct: 448 SPGSCFWLPHGAKIYNKLVDFIRREYRIRMYDEVITPNVFSCDLWRTSGHYQNY-KDCMF 506

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +   K     P +      +F+    SYR+LP       +  R+E+     G+ R R 
Sbjct: 507 IFNVEQKEWGMKPMNCPGHCIMFKQLNASYRSLPIRLADFGVLHRNEISGSLSGLTRVRR 566

Query: 155 FLMKDAYSF 163
           F   D++ F
Sbjct: 567 FQQDDSHIF 575


>gi|146413278|ref|XP_001482610.1| hypothetical protein PGUG_05630 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 685

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 12/168 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHD 334
           + RGI+     + GT +S   + T +  +G D    Y    S+G+ + RV+  ++ +  D
Sbjct: 400 TGRGIQGATSHHLGTNFSKMFNITVENPEGADKPKVYGVQTSWGL-STRVIGVMVMTHSD 458

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVC-------RDACEKIYARLSKVGCDVFWDDMGEQ 387
            KG++ P  VA  ++ +I +    +          D    I ARL+     V  D     
Sbjct: 459 NKGLVLPPRVAQTQVVVIPVGLTSKTADDERKGINDGAADIEARLNAADVRVTSDYRDTY 518

Query: 388 I-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             G +FA  +L G PL+V  G K ++  +V    R  G +  + L E+
Sbjct: 519 TSGWKFANWELKGVPLRVEFGPKDMAQEQVTAVRRDNGEKYTVKLAEL 566



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 288 PTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTVHLTD 347

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           + +     K+   Y +I+  L
Sbjct: 348 KEADEQVMKILDLYTKIYEEL 368


>gi|16552114|dbj|BAB71241.1| unnamed protein product [Homo sapiens]
          Length = 707

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 320 HDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 379

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 380 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 438

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 439 VRRFQQDDAHIF 450


>gi|38570111|ref|NP_689547.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Homo sapiens]
 gi|189083596|sp|A2RTX5|SYTC2_HUMAN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|119622721|gb|EAX02316.1| threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|124376838|gb|AAI32672.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|187953219|gb|AAI36316.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
          Length = 802

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 415 HDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 474

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 475 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 533

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 534 VRRFQQDDAHIF 545


>gi|86149734|ref|ZP_01067964.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840002|gb|EAQ57261.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 602

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y KE +     +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANY-KENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR+LP  F++  +  R E      G+ R REF   DA+ F
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIF 353


>gi|306825809|ref|ZP_07459148.1| serine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432170|gb|EFM35147.1| serine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 424

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELKDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|300708012|ref|XP_002996195.1| hypothetical protein NCER_100753 [Nosema ceranae BRL01]
 gi|239605474|gb|EEQ82524.1| hypothetical protein NCER_100753 [Nosema ceranae BRL01]
          Length = 499

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/334 (18%), Positives = 129/334 (38%), Gaps = 67/334 (20%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F   I S+R+LP    Q     R ELR    ++RS+E L ++ ++  +  
Sbjct: 112 PTSETVMYPSFARWISSHRDLPLKVNQWCNILRWELRGTTPLIRSKEILWQEGHTAHIDK 171

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E +      +   Y R++  L   ++P                ++     ET+ F   D+
Sbjct: 172 EEADKEVLDILDLYYRMYKEL--LAVP----------------VIKGLKTETEKFAGSDY 213

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                             ++ VE +                  +P+    + +GI+    
Sbjct: 214 ------------------STTVEGF------------------IPQ----AGKGIQAATS 233

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  +S       +  DG   +V   S+G+    +  AV+  S D KG++ P  VA  
Sbjct: 234 HHLGQNFSKMFDVKVQVDDGVSDFVYQNSWGMTTRSLGIAVMIHS-DDKGLVLPPKVAKI 292

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--------DDMGEQIGSQFAVADLLG 399
           ++ +I      +   +   K+   ++++   +          D     +G +F   ++ G
Sbjct: 293 QVVIIPCGLSVKTSTEDKNKLLKVINRIKNQLLLSKIRVHIDDRDNVTVGYKFNHWEIRG 352

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            P+++ +G K +  +++ I  R TG +   ++++
Sbjct: 353 VPIRIEIGLKDLEKNEMCIYKRNTGTKNQYTIDD 386


>gi|148706886|gb|EDL38833.1| threonyl-tRNA synthetase-like 1 [Mus musculus]
          Length = 630

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 148/409 (36%), Gaps = 53/409 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IR E  R G  E+  PTL S  LW +SG ++ Y 
Sbjct: 225 FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYR 284

Query: 91  KEMLRL----------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            +M  L                A      +   P +      +F    +S+R LP     
Sbjct: 285 ADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVRLAD 344

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                R E      G+ R   F   DA+ F   P   +       + +LR  + +   S 
Sbjct: 345 FGALHRAEASGSLGGLTRLWRFQQDDAHIF-CAPHQLEAEIQGC-LDFLRCVYSVLGFSF 402

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   + P G      F+     GE +++   D  +  +      F +   LN       
Sbjct: 403 HLALSTRPPG------FL-----GEPRLW---DQAEQVLQQALEKFGEPWDLNPGD---G 445

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DVH   L D+L    +     ++      F  +Y  P       A   +  V 
Sbjct: 446 AFYGPKIDVH---LHDALGRPHQCGTIQLDFQLPLRFDLQYKGP-------AGTPECPVL 495

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  +  V+  S  GK   WP  ++P ++ +I ++   +   +   ++   L 
Sbjct: 496 IHRAVLGSVERLLGVLAESCGGK---WPLWLSPLQVVVIPVRTEQE---EYARQVQQCLQ 549

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G     D D G  +  +   A L  +  Q +VG +  S   V ++ R
Sbjct: 550 AAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTVNVRTR 598


>gi|114659235|ref|XP_001144545.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           2 [Pan troglodytes]
          Length = 802

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 415 HDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 474

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 475 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 533

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 534 VRRFQQDDAHIF 545


>gi|194336185|ref|YP_002017979.1| prolyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|259511610|sp|B4SG51|SYP_PELPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194308662|gb|ACF43362.1| prolyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 481

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 3/159 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++ ++ G     G  ++      F+  DG   YV   S+G+ + R++ A+I +  D +G+
Sbjct: 219 SKALQAGTSHNLGQNFAKAFDCQFQTKDGVLDYVWATSWGV-STRLIGALIMAHSDDRGL 277

Query: 339 IWPDSVAPFKISLINIKAHDQVCR-DACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           + P  +A  ++ +I I   D+    +    +   L+K G   F D   +   G +FA  +
Sbjct: 278 VLPPKLATRQVVIIPILRGDKAAVIERANALAQELNKNGIPSFVDSSEQNSPGWKFAEYE 337

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           L G P+++ +G + +         R T  + +++L+E +
Sbjct: 338 LQGIPIRIELGPRDIEKGICIAARRDTLEKTELALDETL 376



 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++    P
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHANP 166

Query: 168 EGSKHSYNKMFVSY 181
           E S+    +M   Y
Sbjct: 167 EESQEEVLRMINVY 180


>gi|332265242|ref|XP_003281637.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           2 [Nomascus leucogenys]
          Length = 713

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 160/415 (38%), Gaps = 55/415 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 326 HDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 385

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 386 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 444

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
            R F   DA+ F  T E  +            ++   G  S  +   + P    G+    
Sbjct: 445 VRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYSTFGF-SFQLNLSTRPENFLGE---- 498

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            I + +  E Q+  S   MDF  P +    D             A Y    D+   K+ D
Sbjct: 499 -IEMWNEAEKQLQSS--LMDFGEPWKMNPGDG------------AFYGPKIDI---KIKD 540

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           ++    + +   ++    F    +++L   +  K  D K   V +    +G++  + A++
Sbjct: 541 AIGRYHQCATIQLD----FQLPVRFNLTYVS--KDGDDKKRPVIIHRAILGSVERMIAIL 594

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD------- 382
             ++ GK   WP  ++P ++ +I +         ACEK YA   +V  + F +       
Sbjct: 595 SENYGGK---WPFWLSPHQVMVIPVGP-------ACEK-YAL--QVSSEFFEEGFMADVD 641

Query: 383 -DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D    +  +   A L  +   ++VG K   ++ V ++ R   I  ++ +   I+
Sbjct: 642 LDHNCTLNKKIRNAQLAQYNFILVVGEKEKVNNAVNVRTRDNKIHGEILVTSAID 696


>gi|190348971|gb|EDK41532.2| hypothetical protein PGUG_05630 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 685

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 12/168 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHD 334
           + RGI+     + GT +S   + T +  +G D    Y    S+G+ + RV+  ++ +  D
Sbjct: 400 TGRGIQGATSHHLGTNFSKMFNITVENPEGADKPKVYGVQTSWGL-STRVIGVMVMTHSD 458

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVC-------RDACEKIYARLSKVGCDVFWDDMGEQ 387
            KG++ P  VA  ++ +I +    +          D    I ARL+     V  D     
Sbjct: 459 NKGLVLPPRVAQTQVVVIPVGLTSKTADDERKGINDGAADIEARLNAADVRVTSDYRDTY 518

Query: 388 I-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             G +FA  +L G PL+V  G K ++  +V    R  G +  + L E+
Sbjct: 519 TSGWKFANWELKGVPLRVEFGPKDMAQEQVTAVRRDNGEKYTVKLAEL 566



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 288 PTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTVHLTD 347

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           + +     K+   Y +I+  L
Sbjct: 348 KEADEQVMKILDLYTKIYEEL 368


>gi|55736407|gb|AAV60049.1| seryl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738291|gb|AAV61932.1| seryl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 446

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  EM  P + 
Sbjct: 175 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEMITPYMV 220

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D  D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 221 NHDSMFGTGQYPKFKEDTFEL-DGTDYVLI--PTAEVPLTNYYRGEILDGKELPIYFTAL 277

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 278 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPEDSYDELEKMVVNAENILQKLNL- 335

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 336 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 366


>gi|149027310|gb|EDL82977.1| threonyl-tRNA synthetase, isoform CRA_a [Rattus norvegicus]
          Length = 722

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/416 (20%), Positives = 162/416 (38%), Gaps = 57/416 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y +
Sbjct: 334 FHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSE 393

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       ++  +  P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 394 NMFSFEVEKEQFAL-KPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLT 452

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSH 208
           R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD   
Sbjct: 453 RVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD--- 507

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDV 262
             I + +  E Q+             EN       SLN   E+W       A Y    D+
Sbjct: 508 --IEIWNQAEKQL-------------EN-------SLNEFGEKWELNPGDGAFYGPKIDI 545

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIG 320
              ++ D++    + +   ++    F    +++L    T+   DG D    V +    +G
Sbjct: 546 ---QIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSHDGDDKKRPVIVHRAILG 594

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+          V 
Sbjct: 595 SVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQEFHDAKFMVD 648

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D D G  +  +   A L  +   ++VG K  +   V I+ R   +  + ++ E +
Sbjct: 649 IDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVGETV 704


>gi|147669325|ref|YP_001214143.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Dehalococcoides
           sp. BAV1]
 gi|189083604|sp|A5FRB3|SYT_DEHSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146270273|gb|ABQ17265.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Dehalococcoides
           sp. BAV1]
          Length = 582

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 32  IHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +HQ    G+ +WLP G      +    ++E  + G   +  P +   DLW  SG +  Y 
Sbjct: 198 LHQEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKRGYDLVYTPHIAKVDLWKTSGHWGFYR 257

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           + M    D + +  +  P +      +F++  +SY+ LP    ++   +R E   R GV+
Sbjct: 258 ENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSYKELPIRMAELGTVYRYE---RSGVL 314

Query: 151 ----RSREFLMKDAYSFDL 165
               R R F   DA+ F L
Sbjct: 315 HGLSRVRGFTQDDAHIFCL 333


>gi|320165002|gb|EFW41901.1| Tarsl2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 777

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 78/216 (36%), Gaps = 32/216 (14%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A++  H+L+    +  M H +S G    LP G K +  +   IR      G  E+S P 
Sbjct: 322 EAKLRDHRLIGAAQQLFMFHPYSPGSAFMLPHGMKIISRLQEYIRLAYIHYGYQEVSTPI 381

Query: 74  LQSADLWVESGRYDSYGKEMLRLAD---------------------------RNDKAMIY 106
           + S +LW  SG    Y ++M  +                              +D     
Sbjct: 382 VYSKELWETSGHLQHYAQDMFAVTGGLTPAAPAAGAAAGAAGHSHHHADSDASSDATQAL 441

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDL 165
            P +      IF+    SYR LP          R+E +    G+ R R F   DA+ F  
Sbjct: 442 KPMNCPGHCLIFQRKHYSYRELPIRLADFSPLHRNEAKGALSGLTRVRRFHQDDAHIF-C 500

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           TPE  +     +      ++ RLG     ++  + P
Sbjct: 501 TPEQIQAEILNVLGFVREVYGRLGFSEFTLKLSTRP 536


>gi|91087799|ref|XP_967345.1| PREDICTED: similar to RH56418p [Tribolium castaneum]
          Length = 707

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   + P G    + +   I++E  + G  E+  P + +A LW  SG +  Y 
Sbjct: 320 FFHELSPGSCFFQPRGAHIYNTLINFIKKEYRKRGFQEVISPNIFNAKLWQVSGHWAHYA 379

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M       DK  +  P +      IF +  +S+R LP       +  R+EL     G+
Sbjct: 380 DNMFSFDVEKDKFAL-KPMNCPGHCLIFDNRTRSWRELPLRLADFGVLHRNELSGALTGL 438

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 439 TRVRRFQQDDAHIF 452


>gi|217077729|ref|YP_002335447.1| threonyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037584|gb|ACJ76106.1| threonyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 636

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  +LP G   L+ + +  R+     G  E+  P + +  LW +SG +D Y K+ + 
Sbjct: 261 AAGMPIFLPKGATILNELMSFSRQLHKEYGYKEVMTPLIMNVKLWHQSGHWDHY-KDNMY 319

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             ++ +      P +      I+++ + SYR+LP   ++     R E      G++R R 
Sbjct: 320 FTEKEETEYAVKPMNCPGHILIYKNDVVSYRDLPIRLFEFGKVHRYERSGVLHGLLRVRA 379

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 380 FTQDDAHIF 388


>gi|161611297|ref|YP_138864.2| seryl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|161936380|ref|YP_140747.2| seryl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 425

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  EM  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEMITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D  D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFEL-DGTDYVLI--PTAEVPLTNYYRGEILDGKELPIYFTAL 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM V+   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPEDSYDELEKMVVNAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|88608148|ref|YP_506185.1| threonyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|123763729|sp|Q2GEB1|SYT_NEOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88600317|gb|ABD45785.1| threonyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 637

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 5/172 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + ++G   W   G      +   IR +    G  E+  P + +  LW  SG +  + K
Sbjct: 258 LQEEAQGQVFWHENGFILYRVLENYIRNKLKTHGYREVKTPLVYNKCLWERSGHWSKF-K 316

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           E + +   +D      P +     ++++  +KSYR+LP    +  +  R+E      G+M
Sbjct: 317 ENMFVIRSDDGEFSLKPMNCPAHIEVYKQSLKSYRDLPLRLAEFGMCHRNEASGALHGLM 376

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGP 201
           R R F+  DA+ F  TP+         F   L+ ++  LG   + +R    P
Sbjct: 377 RVRGFVQDDAHIF-CTPQ-QICDETIAFCGLLKEVYRDLGFTEVEVRFSDRP 426


>gi|251792477|ref|YP_003007203.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247533870|gb|ACS97116.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 643

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/421 (19%), Positives = 155/421 (36%), Gaps = 50/421 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFTNIFVKLSTRPEKRIGADDM 433

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +             C+++ +   +     +++       I E   A Y    +      
Sbjct: 434 WD-------------CAEEGLANALKHNGLEYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D          R  + G I      ++LP  ++A++   D       M    I G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLNASYVAEDNDRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDD 383
              +I   + G    +P  +AP +  ++NI  +  +  +D  +K    LS  G  V  D 
Sbjct: 521 FIGIITEEYAG---FFPAWLAPTQAVVMNITDSQSEYVQDVAKK----LSDAGLRVKTDL 573

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E++G +     L   P  ++ G K +   KV ++ R        ++EE ++    +  
Sbjct: 574 RNEKVGFKIREHTLRRVPYMLVCGDKEIETGKVAVRTRKGQDLGTFTVEEFLDVLKKQVR 633

Query: 444 N 444
           N
Sbjct: 634 N 634


>gi|254565877|ref|XP_002490049.1| Protein of unknown function that may interact with ribosomes, based
           on co-purification experiments [Pichia pastoris GS115]
 gi|238029845|emb|CAY67768.1| Protein of unknown function that may interact with ribosomes, based
           on co-purification experiments [Pichia pastoris GS115]
 gi|328350453|emb|CCA36853.1| prolyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 677

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 17/199 (8%)

Query: 250 EQWTAPYAATSDVHNEK----LFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           E    P        NEK    LF +  E     + RGI+       G  +S   + + + 
Sbjct: 359 ELLAVPVVKGKKTENEKFAGGLFTTTCEGYIPTTGRGIQGATSHCLGQNFSKMFNISVEN 418

Query: 305 ADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            DG D    +    S+G+ + RV+  ++    D KG++ P  V+ +++ +I +    +  
Sbjct: 419 PDGADKPKLFAWQNSWGL-STRVIGVMVMVHSDNKGLVIPPRVSQYQVIVIPVGITSKTT 477

Query: 362 RDACEKIYARLSKVGCDVFWDDM--------GEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           ++  +KI A  +K+   +  +D+            G +F+ A+L G PL++ VG + +  
Sbjct: 478 KEEEQKILATCNKIEGKLRQNDLRVTSDYRTNYSPGWKFSNAELKGIPLRIEVGPRDLQK 537

Query: 414 SKVEIKHRLTGIREDMSLE 432
           + V    R    +  +SL+
Sbjct: 538 NTVVAVRRDDFTKTTISLD 556



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 280 PTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTF 339

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y+ I+  L
Sbjct: 340 EEANKEVLQILDYYVGIYEEL 360


>gi|270009374|gb|EFA05822.1| hypothetical protein TcasGA2_TC008604 [Tribolium castaneum]
          Length = 685

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   + P G    + +   I++E  + G  E+  P + +A LW  SG +  Y 
Sbjct: 298 FFHELSPGSCFFQPRGAHIYNTLINFIKKEYRKRGFQEVISPNIFNAKLWQVSGHWAHYA 357

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M       DK  +  P +      IF +  +S+R LP       +  R+EL     G+
Sbjct: 358 DNMFSFDVEKDKFAL-KPMNCPGHCLIFDNRTRSWRELPLRLADFGVLHRNELSGALTGL 416

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 417 TRVRRFQQDDAHIF 430


>gi|114659241|ref|XP_001144153.1| PREDICTED: hypothetical protein [Pan troglodytes]
 gi|332844841|ref|XP_001144319.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           1 [Pan troglodytes]
          Length = 707

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 320 HDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 379

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 380 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 438

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 439 VRRFQQDDAHIF 450


>gi|57168347|ref|ZP_00367481.1| threonyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|57020155|gb|EAL56829.1| threonyl-tRNA synthetase [Campylobacter coli RM2228]
          Length = 602

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WL  G +    +  ++ +     G   +  P L  AD W  SG Y +Y KE +   
Sbjct: 228 GLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHYANY-KENMYFT 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      I++S ++SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 287 QIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFT 346

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 347 QDDAHIF 353


>gi|218288750|ref|ZP_03493013.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241108|gb|EED08284.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 483

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++     Y G  ++      +   D +  YV   S+G+ + R++ A++    D +G++
Sbjct: 227 RALQTATSHYLGQNFAKSFEIQYLDKDNQLKYVYTTSWGM-STRILGAIVMVHGDDRGLV 285

Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
            P  +AP ++ ++ I   KA + V   A +   A L +    V  DD  +   G +F   
Sbjct: 286 LPPKLAPTQVVVVPIGPAKAREAVVAKARDLAEA-LRRADIRVHLDDRDDVSPGWKFNEY 344

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +L G P+++ +G + +  S+  +  R TG +  + L+ VI       S+
Sbjct: 345 ELRGVPIRLELGPRDLEASQAVLARRDTGEKITVPLDGVIERVQALLSD 393


>gi|257077256|ref|ZP_05571617.1| glycyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 474

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 6/129 (4%)

Query: 311 YVQMGSYGIG--AMRVVAAVIESSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEK 367
           YV   SYGI    + ++A  +E+  DGK ++  P  VAP+  ++  +   + + ++  E 
Sbjct: 338 YVIEPSYGIDRILLTLMAQSLET-RDGKNVLKIPYPVAPYHFAVFPLMKKENL-KEKAEY 395

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  + K    + +D+ G  IG ++A  D +G P  + V  + + D+ V ++ R T  ++
Sbjct: 396 IYENMKKQDKYIVYDEAG-TIGKRYARQDEIGTPYCITVDYQTLEDNTVTVRSRDTAEQK 454

Query: 428 DMSLEEVIN 436
            + +EE+++
Sbjct: 455 RIKIEELLD 463


>gi|330802268|ref|XP_003289141.1| hypothetical protein DICPUDRAFT_35169 [Dictyostelium purpureum]
 gi|325080808|gb|EGC34348.1| hypothetical protein DICPUDRAFT_35169 [Dictyostelium purpureum]
          Length = 679

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 8/158 (5%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           + A +  H+L+ +       H  S G   +LP G K  + +   +R E  R G  E+  P
Sbjct: 268 KKASLRDHRLIGKNQELFFFHPFSPGSCFFLPHGTKIYNKLLNFLRSEYRRRGYQEVITP 327

Query: 73  TLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            + S  LW +SG + +Y   M     D    ++   P +      +F    +SY+ LP  
Sbjct: 328 NIYSQKLWEQSGHWQNYKDNMFSFECDHTHYSL--KPMNCPGHCLMFAHRQRSYKELPMR 385

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
                +  R+E      G+ R R F   DA+ F  TP+
Sbjct: 386 IADFGVLHRNESHGSLTGLTRVRRFQQDDAHIF-CTPD 422


>gi|47220882|emb|CAG03089.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1638

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 124/339 (36%), Gaps = 45/339 (13%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 1218 PTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATK 1277

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            E +     ++   Y R++    L +IP                +V     E + F   D+
Sbjct: 1278 EEAAEEVLQILDLYARVYEE--LMAIP----------------VVKGRKTEKEKFAGGDY 1319

Query: 228  MDFPIPSENTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                     T  +  IS +  +I      P  A   +      D  P    +  +G    
Sbjct: 1320 --------TTTVEAFISASGRAIQVPGAPPSGAPEGLWWGAAADEAPA---LCPQGATSH 1368

Query: 286  HIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            H+   G  +S      F+     G+       S+GI   R +  +     D KG++ P  
Sbjct: 1369 HL---GQNFSKMFEIVFEDPKKPGEKQLAFQNSWGI-TTRTIGVLTMVHGDNKGLVLPPR 1424

Query: 344  VAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
            VA  ++ +I         +A  Q     C K    L + G  V  D       G +F   
Sbjct: 1425 VACLQVVIIPCGITASLPEADRQALLAQCAKYQDHLQRAGVRVKSDLRDNYSPGWKFNHW 1484

Query: 396  DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +L G P+++ VG K +   +     R TG +  +   EV
Sbjct: 1485 ELKGVPVRLEVGPKDLQQRQCVAVRRDTGAKLTVPEAEV 1523


>gi|159036838|ref|YP_001536091.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157915673|gb|ABV97100.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 468

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E V+ +     I SYR+LP    Q     R ELRPR   +R+ EFL ++ ++ 
Sbjct: 104 VVVRPTSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQEGHTA 162

Query: 164 DLTPEGSK--------HSYNKMFVSYLRIFHRLGLKS 192
             T + ++         +Y  + V+ L I  ++GLK+
Sbjct: 163 HATRQDARAYARKILHEAYEDLMVNVLAIPVQVGLKT 199


>gi|320593564|gb|EFX05973.1| prolyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 554

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
            +++L+  MI  +++  G Y   P      + +    ++     G  E S P   SA  L
Sbjct: 62  QEVVLKAEMIEYYNEIAGFYILRPASMYIWNVIRKWFQQRIEHMGVEETSFPMFLSAKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q 
Sbjct: 122 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L
Sbjct: 182 NSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEQL 234


>gi|319947603|ref|ZP_08021833.1| serine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319746291|gb|EFV98554.1| serine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 446

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 175 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 220

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 221 NHDSMFGTGQYPKFKEDTFELSDTN---YVLIPTAEVPLTNYYRDEIIDGKDLPIYFTAM 277

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 278 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 336

Query: 192 SIPMRAESGPIG 203
              M   +G +G
Sbjct: 337 YRVMALSTGDMG 348


>gi|294056086|ref|YP_003549744.1| prolyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293615419|gb|ADE55574.1| prolyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 506

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 131/344 (38%), Gaps = 73/344 (21%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  GK  L+ A   ++ +I  PT E ++ ++F   ++SYR+LP    Q     R E+R R
Sbjct: 105 DEDGK--LQPAGPLEEPLIVRPTSETIIGELFSKWVQSYRDLPLLINQWANVVRWEMRTR 162

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R+ EFL ++ ++   T E +     KM   Y                       D 
Sbjct: 163 L-FLRTAEFLWQEGHTVHATSEEAMEETRKMLEVY----------------------ADF 199

Query: 207 SHEFIVL-ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +  ++ +   TGE       +   FP        D   ++ ++++   A  A TS    +
Sbjct: 200 AESYMAMPVITGE-----KTEAERFP------GADATFAIEAMMQDRKALQAGTSHFLGQ 248

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             F    + K +SA G E                           Y    S+G+ + R+V
Sbjct: 249 N-FAKSSDIKYLSAEGKE--------------------------EYAWTTSWGV-STRLV 280

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVG-----C 377
             +I +  D  G++ P  +AP  + +I +   +   Q   D C ++  +L          
Sbjct: 281 GGLIMTHSDDDGLVLPPRIAPSHVVIIPVTPKEETRQQVLDYCLELKQQLEAQSFLDGRV 340

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            V +DD   + G +       G P++V VG + + +  V +  R
Sbjct: 341 KVEFDDRDMRGGEKAWGWIKKGIPVRVEVGPRDMENGSVFVGRR 384


>gi|313899489|ref|ZP_07832999.1| threonine--tRNA ligase [Clostridium sp. HGF2]
 gi|312955777|gb|EFR37435.1| threonine--tRNA ligase [Clostridium sp. HGF2]
          Length = 579

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 161/415 (38%), Gaps = 53/415 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ + + G+  +LP G    + +     EE  +     +  P + S +LW  SG +++Y 
Sbjct: 196 MMSEFAPGMPFFLPNGMIIRNLLENFWYEEHTKENYQFIKTPIMMSKELWEVSGHWENY- 254

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +      +F++ + SY++LP    ++    R E      G+
Sbjct: 255 KENMYTTMVDDREFAIKPMNCPGSLLVFKNGLHSYKDLPLRMGELGQVHRHEASGALNGL 314

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F + P+  +    ++     R++   GL     +  R E   I GDL
Sbjct: 315 FRVRTFTQDDAHIF-MRPDQIESEVMQLIQFIDRVYSVFGLSYRIELSTRPEKKYI-GDL 372

Query: 207 S---HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           +        LAD       C     D+ +   +  F                Y    D H
Sbjct: 373 AIWEQSEKALADA------CVHAGKDYKVNPGDGAF----------------YGPKLDFH 410

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
              + DSL        R  + G I       +LP     T+   DG K   V +     G
Sbjct: 411 ---IKDSL-------GREWQCGTI---QLDMNLPERFDLTYVEKDGSKVRPVMLHRVIFG 457

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++     G   +W   +AP ++S++ +  H +       +++ +L  +G    
Sbjct: 458 SIERFIGILIEHFAGHFPVW---LAPQQVSVVPV--HHEKHLGYANEVHEKLCALGFRSK 512

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E++G +   A L   P Q+++G   + +  V ++   +     MSL++ I
Sbjct: 513 LDARNEKLGYRIREAQLSKIPYQLVIGDGEIENRSVTLRRAQSRESITMSLDDFI 567


>gi|297697604|ref|XP_002825941.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Pongo abelii]
          Length = 707

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 320 HDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 379

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 380 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 438

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 439 VRRFQQDDAHIF 450


>gi|325188237|emb|CCA22777.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 756

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   WLP G      +   +R +    G  E+  P + + +LW  SG    Y 
Sbjct: 371 FFHSLSPGSAFWLPNGAHIFSKLLEFLRAQYRERGYNEVITPNMFNMELWNTSGHAAHY- 429

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE + + +   +     P +      +F   ++SYR LP  +    +  R+EL     G+
Sbjct: 430 KENMFVFEVESQEFALKPMNCPSHCLMFDHRLRSYRELPIRYADFGVLHRNELSGALTGL 489

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 490 TRVRRFQQDDAHIF 503


>gi|194335337|ref|YP_002017131.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693365|sp|B4SB93|SYT_PELPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194307814|gb|ACF42514.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 657

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G    + +   ++EEQ + G + +  P + + +L+  SG Y  Y       L
Sbjct: 273 GLPIWLPKGAIIRNELETFLKEEQRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPL 332

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D   K   Y   P +      I+ S ++SYR+LP    +    +R E      G++R
Sbjct: 333 TYHDEEGKQEQYLLKPMNCPHHHLIYSSKMRSYRDLPLRLTEFGTVYRHEQSGELNGLVR 392

Query: 152 SREFLMKDAYSF 163
           +R F   D++ +
Sbjct: 393 ARGFTQDDSHIY 404


>gi|313665217|ref|YP_004047088.1| proline--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949831|gb|ADR24427.1| proline--tRNA ligase [Mycoplasma leachii PG50]
          Length = 474

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/420 (20%), Positives = 163/420 (38%), Gaps = 82/420 (19%)

Query: 15  PRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           PR+ + +     ++L T +    S KG   + P G +  + +   + EE  +     +  
Sbjct: 10  PRNIDFSQWYTDIVLNTKLASYGSVKGTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYF 69

Query: 72  PTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           P L    L+  E    D +  E+  +      + ++ +   PT E +M D F + I SYR
Sbjct: 70  PLLIPESLFNKEKDHIDGFSPEIATVTRVGQKKLEENLFIRPTSEVLMMDYFSNEINSYR 129

Query: 127 NLPFTFYQIQ--LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +LP  + Q    +++    RP    +R+ EFL ++ ++          SYN+     L+I
Sbjct: 130 DLPLIYNQWCNVMRWEKTTRP---FLRTIEFLWQEGHTV-------HSSYNEAENFCLKI 179

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I    + E ++L       V C K        +E   F     
Sbjct: 180 LD---------------IYEKFAKEVLLLP------VICGK-------KTEKEKF----- 206

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A   D +         E+     + ++ G   +F   ++      F+ 
Sbjct: 207 ------------AGAKDTYT-------IESLMFDGQALQCGTSHFFADNFTKVYDIKFQN 247

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS---VAPFKISLINIKAHDQVC 361
            + K  +    S+G+   R++ A+I +  D  G++ P     +    I + NI+  DQV 
Sbjct: 248 KENKLEHAYSTSWGVST-RLIGALIMTHSDDNGLVLPSKIAPIQIQIIQIKNIEQIDQV- 305

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E I  +LS    DV  D+  +  G + + A++ G P+++ +G + + ++++ I  R
Sbjct: 306 ---VENIKEKLSDYRIDV--DNSDKSFGFKISEAEIKGIPIRIEIGPRDLENNQITISRR 360


>gi|305432763|ref|ZP_07401922.1| threonine--tRNA ligase [Campylobacter coli JV20]
 gi|304444160|gb|EFM36814.1| threonine--tRNA ligase [Campylobacter coli JV20]
          Length = 610

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WL  G +    +  ++ +     G   +  P L  AD W  SG Y +Y KE +   
Sbjct: 236 GLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHYANY-KENMYFT 294

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      I++S ++SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 295 QIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFT 354

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 355 QDDAHIF 361


>gi|254468875|ref|ZP_05082281.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087685|gb|EDZ64968.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 652

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 24/185 (12%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H+KG   W          +   +R++    G  E+  PT+    LW +SG +++Y
Sbjct: 278 GMVFWHAKGWSLW--------QEIENYMRKKFVDYGYQEIKTPTVLDKTLWEKSGHWENY 329

Query: 90  GKEM-LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            + M +  ++  D A+  +  P H      IF   + SYR LP    +     R+E    
Sbjct: 330 HENMFITHSEHRDYAVKPMNCPGH----VQIFNHSLHSYRELPLRLAEFGSCHRNEPSGA 385

Query: 147 F-GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-- 201
             G+MR R F   DA+ F    +      ++NKM +   + F   G   I ++  + P  
Sbjct: 386 LHGLMRVRGFTQDDAHIFCTEDQILDEVINFNKMLMETYKDF---GFNDIEVKLSTRPEK 442

Query: 202 -IGGD 205
            +G D
Sbjct: 443 RVGSD 447


>gi|149195433|ref|ZP_01872516.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134438|gb|EDM22931.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 613

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 12/178 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---- 93
           G+  WLP G     N+  ++     +     +  P +  +++W  SG Y +Y + M    
Sbjct: 233 GMPIWLPRGAMLRANLEKLLFSAHIQREYEPVRGPEILRSEMWKISGHYYNYKENMYFTE 292

Query: 94  LRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           +   D   +A  YG  P +      IF   ++SY+ LP  F++     R E      G++
Sbjct: 293 IAHDDNQKQAEEYGIKPMNCLSHVKIFGHKVRSYKELPLRFFEFGTVHRHEKSGVLHGLL 352

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           R REF   DA+ F   PE  +    K+      I  R G K    I  R E   IG D
Sbjct: 353 RVREFTQDDAHIF-CRPEQIEEEVIKVLDFVDSIMQRFGFKYEMEISTRPEKS-IGSD 408


>gi|322796311|gb|EFZ18882.1| hypothetical protein SINV_16250 [Solenopsis invicta]
          Length = 807

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   IR E  + G  E+  P + ++ LW  SG +  Y + 
Sbjct: 422 HELSPGSCFFQPRGAYIYNTLMEFIRSEYRKRGFQEVITPNIYNSKLWQTSGHWQHYAEN 481

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D   +     P +      IF    +S+R LP       +  R+EL     G+ R
Sbjct: 482 MFSF-DVEKETFALKPMNCPGHCLIFDVRCRSWRELPLRLADFGVLHRNELSGALTGLTR 540

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 541 VRRFQQDDAHIF 552


>gi|291550699|emb|CBL26961.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           torques L2-14]
          Length = 650

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G   +  +   I +E+ + G I    P +  +DL+  SG +D Y + M  L
Sbjct: 259 QGLPLIMPNGVIIMQELQRWIEDEEAKRGYIRTKTPLMAKSDLYKISGHWDHYKEGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D      ++   P        ++++   SYR+LP  + +    FR+E      G+ R R
Sbjct: 319 GDEEKDKEVFALRPMTCPFQYYVYKAEQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVR 378

Query: 154 EFLMKDAY 161
           +F + + +
Sbjct: 379 QFTISEGH 386


>gi|302894055|ref|XP_003045908.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726835|gb|EEU40195.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 555

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADL 79
            +++L+  M+  +++  G +   PL     + +    +      G  E + P  L S  L
Sbjct: 63  QEVVLKAEMVEYYTEISGFFVLRPLAMHIWNEIRKWFQAHIEEMGVDETNFPMFLSSKSL 122

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 123 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 182

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L
Sbjct: 183 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGVEVLEILELYAGVYEKL 235


>gi|78186013|ref|YP_374056.1| threonyl-tRNA synthetase, class IIA [Chlorobium luteolum DSM 273]
 gi|78165915|gb|ABB23013.1| Ser-tRNA(Thr) hydrolase [Chlorobium luteolum DSM 273]
          Length = 677

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      +   +++EQ R G + +  P + + +L+  SG Y  Y       L
Sbjct: 293 GLPVWLPKGAIIRQELETFLKDEQRRRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPL 352

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D + K   Y   P +      I+ S ++SYR+LP    +    +R E      G++R
Sbjct: 353 TYHDEDGKQEQYLLKPMNCPHHHLIYSSEMRSYRDLPIRLTEFGTVYRHEQSGELNGLVR 412

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           +R F   D++ +    +      N + ++   +F  LG  ++  R
Sbjct: 413 ARGFTQDDSHIYCRPDQLVDEICNAIDLTQF-VFRTLGFDAVETR 456


>gi|118591255|ref|ZP_01548654.1| threonyl-tRNA synthetase [Stappia aggregata IAM 12614]
 gi|118436331|gb|EAV42973.1| threonyl-tRNA synthetase [Stappia aggregata IAM 12614]
          Length = 656

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 20/226 (8%)

Query: 5   KYFLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H KL     + H  +   G+  W P G     ++ A  R   
Sbjct: 237 KAYLHMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHPKGWDMFQSLIAYKRRVL 292

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM--LRLAD---RNDKAMIYGPTHEEVMTD 116
             T   E++ P +    LW  SG +  Y + M  ++ AD    +++     P +      
Sbjct: 293 KDTYK-EVNAPQVLHTSLWETSGHWTWYKENMFSVQCADPEAEDERVFALKPMNCPGHVQ 351

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       
Sbjct: 352 IFKHGLKSYRDLPMRLAEFGMVHRYEPSGALHGLMRVRGFTQDDAHVF-CTEEQMADECL 410

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS--HEFIVLADT 216
           K+    L ++   G   I ++  + P   +G D +  H   +++D 
Sbjct: 411 KINDLILSVYEDFGFDEIVVKLSTRPEKRVGTDAAWDHAEAIMSDV 456


>gi|295109520|emb|CBL23473.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           obeum A2-162]
          Length = 653

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G   +  +   I +E+ + G +    P +  +DL+  SG +D Y   M  L
Sbjct: 259 QGLPLIMPNGVIMMQELQRWIEDEETKRGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D  +   ++   P        ++++   SYR+LP  + +    FR+E      G+ R R
Sbjct: 319 GDEENDKEVFALRPMTCPFQYYVYKAEQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVR 378

Query: 154 EFLMKDAY 161
           +F + + +
Sbjct: 379 QFTISEGH 386


>gi|322374872|ref|ZP_08049386.1| serine--tRNA ligase [Streptococcus sp. C300]
 gi|321280372|gb|EFX57411.1| serine--tRNA ligase [Streptococcus sp. C300]
          Length = 424

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|196001647|ref|XP_002110691.1| hypothetical protein TRIADDRAFT_54976 [Trichoplax adhaerens]
 gi|190586642|gb|EDV26695.1| hypothetical protein TRIADDRAFT_54976 [Trichoplax adhaerens]
          Length = 1241

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 116/320 (36%), Gaps = 74/320 (23%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   IKS+R+LP    Q     R E +     +R+REFL ++ +S  ++ 
Sbjct: 947  PTSETVMYPSYAKWIKSHRDLPLKLNQWNNVVRWEFKHPQPFIRTREFLWQEGHSAFVSK 1006

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            + ++     +   Y RI+    L +IP                +V     E + F   DF
Sbjct: 1007 KEAEEEVFTILELYRRIYEE--LLAIP----------------VVKGRKTEKEKFAGGDF 1048

Query: 228  MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     T  +  I  N                                 RG +    
Sbjct: 1049 T--------TTVEAFIDAN--------------------------------GRGAQGATS 1068

Query: 288  FYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             + G  +S      ++  + K+  +V   S+GI + R +  +     D KG+I P  VA 
Sbjct: 1069 HHLGQNFSKMFEIVYEHPETKEKAFVYQNSWGI-STRTLGVLCLVHGDNKGLIIPPKVAD 1127

Query: 347  FKISLINIKAHDQVCRDACEKIYARLS-----------KVGCDVFWDDMGEQIGSQFAVA 395
             ++ +I       +  D   KIY   S           +  CD   D+     G +F   
Sbjct: 1128 IQVIIIPCGISANLSEDERNKIYDSCSSYVKILKDGGIRADCDTR-DNYS--AGWKFNHY 1184

Query: 396  DLLGFPLQVIVGSKFVSDSK 415
            +L G PL++ +G K + +++
Sbjct: 1185 ELKGVPLRMELGPKDIKNNQ 1204


>gi|149409915|ref|XP_001508543.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 719

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y + 
Sbjct: 332 HELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVTPNIYNSKLWLTSGHWQHYSEN 391

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 392 MFSF-EVEKEIFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTR 450

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 451 VRRFQQDDAHIF 462


>gi|86158405|ref|YP_465190.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123736663|sp|Q2IJC0|SYT_ANADE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|85774916|gb|ABC81753.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 650

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 18/145 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+++ G   WLP G    + +   +R    + G  E+  P L +  LW  SG +  Y + 
Sbjct: 262 HEYAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGYQEVKTPLLFNKRLWETSGHWGKYREN 321

Query: 93  MLRLAD-RNDKAM------------IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           M  + D  +D A+            +  P+H      I+R   +SYR LP  ++      
Sbjct: 322 MFLVVDSESDPALALEDRCSFSLKPMNCPSHHL----IYRMDKRSYRELPVRYFTTDALH 377

Query: 140 RDELRPRF-GVMRSREFLMKDAYSF 163
           R+E      G+ R R+F   DA+ +
Sbjct: 378 RNEASGSLGGLTRVRQFEQDDAHIY 402


>gi|325688711|gb|EGD30720.1| serine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDSKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|319935875|ref|ZP_08010301.1| threonyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809142|gb|EFW05623.1| threonyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 581

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 8/178 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +++ G+  +LP G    + +     +E  + G   +  P + S +LW  SG + +Y 
Sbjct: 198 MMSEYAPGMPFFLPHGMLLRNELEKFWYDEHTKEGYEFIKTPIMMSKELWEVSGHWYNYK 257

Query: 91  KEML-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           + M   L D  + A+   P +      ++++ + SY++LP    ++    R E      G
Sbjct: 258 ENMYTSLVDEREFAI--KPMNCPGSLLVYKNGLHSYKDLPIRMGELGQVHRHEASGALNG 315

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIG 203
           + R R F   DA+ F +TP+  +    ++     R++  LGL     +  R E   IG
Sbjct: 316 LFRVRTFTQDDAHIF-MTPDQIESEVVRLIAFIDRVYSMLGLSYDIELSTRPEEKYIG 372


>gi|164659836|ref|XP_001731042.1| hypothetical protein MGL_2041 [Malassezia globosa CBS 7966]
 gi|159104940|gb|EDP43828.1| hypothetical protein MGL_2041 [Malassezia globosa CBS 7966]
          Length = 815

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G    +P G + L  V  +IR+  +  G  E+  P L  + LW +SG ++ Y ++
Sbjct: 337 HDSSPGSPFVMPHGMRLLRKVERVIRDLYDTFGYDEVQTPQLFRSSLWKQSGHWEKYRED 396

Query: 93  M-----LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M           +D      P +      +F    +SYR LP    +     R+E     
Sbjct: 397 MFSAQGFSCCGAHDDVFGLKPMNCPGHCVMFAHQPRSYRELPMRLAEFSPLHRNEASGAL 456

Query: 148 -GVMRSREFLMKDAYSFDLTP 167
            G+ R R F   DA+ F  TP
Sbjct: 457 SGLTRVRRFHQDDAHVF-CTP 476


>gi|322696936|gb|EFY88721.1| putative threonine--tRNA ligase [Metarhizium acridum CQMa 102]
          Length = 491

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 28/187 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RR     P  +E P   +I   + +  T     +S G   +LP G +  + +   IR++ 
Sbjct: 27  RRQYSQKPEKREPPDHRKIGLQQELFITSA---YSPGSPIFLPNGARIFNRLIDFIRKQY 83

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-----NDKAMIYGPTHEEVMTD 116
            R G  E+  PT+    LW +SG  ++Y  +M  +         D     G  H  V  D
Sbjct: 84  ARYGFQEVITPTIYKKALWAKSGHLENYADDMYTVTGNASTPGKDTGGCCGSDHGPVEPD 143

Query: 117 -------------------IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
                              IF S ++SYR LP  +       R+E+     G+ R R F 
Sbjct: 144 SEADNEYGLKPMNCPGHCLIFASKVRSYRELPVRYADFSPLHRNEVSGALSGLTRVRRFH 203

Query: 157 MKDAYSF 163
             D + F
Sbjct: 204 QDDGHIF 210


>gi|322700868|gb|EFY92620.1| prolyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 556

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 7/173 (4%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADL 79
            +++L+  M+  +Q   G +   PL       +           G  E S P  L    L
Sbjct: 62  QEVVLKAEMVEYYQEISGFFVLRPLSMHIWSTIRKWFSGHIEELGVEEASFPLFLSKTSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    D +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q 
Sbjct: 122 DKEKDHVDGFAPELAWVERAGDKKLDVPVAIRPTSEAVMYPYYAKWIRSHRDLPLRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L
Sbjct: 182 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEKL 234


>gi|303388510|ref|XP_003072489.1| prolyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301629|gb|ADM11129.1| prolyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
          Length = 508

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 11/177 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG Y   P GQ     +     E+    G  E   P L   + L  E    +++  E+  
Sbjct: 44  KGCYVMRPQGQFVWKCIQKWFTEKIEELGVQECYFPMLVPKSTLEKEKNHVENFSPEVAW 103

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    ++ +       PT E ++   F   I+S+R+LP    Q     R EL      +R
Sbjct: 104 ITKCGNEVLGDPVAVRPTSETIIYPSFSKWIRSHRDLPLKINQWCSVLRWELHGTLPFIR 163

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----RAESGPIGG 204
            +EFL ++ ++  LT E S      +   Y RI+    L ++P+    ++ES   GG
Sbjct: 164 GKEFLWQEGHTAFLTKEESDVEVFAILDLYSRIYSE--LLAVPVIKGRKSESEKFGG 218


>gi|15237183|ref|NP_200065.1| OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/
           nucleotide binding / proline-tRNA ligase [Arabidopsis
           thaliana]
 gi|10177035|dbj|BAB10183.1| prolyl tRNA synthetase [Arabidopsis thaliana]
 gi|34365755|gb|AAQ65189.1| At5g52520 [Arabidopsis thaliana]
 gi|51970984|dbj|BAD44184.1| prolyl tRNA synthetase [Arabidopsis thaliana]
 gi|332008841|gb|AED96224.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 543

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R +   
Sbjct: 158 GKEL-------EEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTK-PF 209

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           +R+ EFL ++ ++   TPE ++    +M   Y R  F +  +  IP R
Sbjct: 210 IRTLEFLWQEGHTAHATPEEAEKEAKQMIEIYTRFAFEQTAIPVIPGR 257


>gi|330466285|ref|YP_004404028.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809256|gb|AEB43428.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E V+ +     I SYR+LP    Q     R ELRPR   +R+ EFL ++ ++ 
Sbjct: 104 VVVRPTSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQEGHTA 162

Query: 164 DLTPEGSK--------HSYNKMFVSYLRIFHRLGLKS 192
             T E ++         +Y  + V+ L I   +GLK+
Sbjct: 163 HATREDARAYARKILHEAYEDLMVNVLGIPVVVGLKT 199


>gi|315222160|ref|ZP_07864069.1| seryl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188786|gb|EFU22492.1| seryl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHQKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---YVLIPTAEVPLTNYYRGEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEHSYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|325695149|gb|EGD37050.1| serine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|302865324|ref|YP_003833961.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302568183|gb|ADL44385.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G  A   V   +RE + R G   +  P L   +L+  SG    +  +M   +
Sbjct: 23  GLPIWLPAGAAARHAVEEYVRELERRAGYQHVYSPPLGKRELFELSGHLGYFADDMFPPM 82

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM---- 150
           RL+   D   +  P        +FR+  +SYR LP    ++   +R E   R GV+    
Sbjct: 83  RLS--ADDEFVLRPALCPHHALVFRARGRSYRELPLRVAELGGMYRAE---RSGVLGGLS 137

Query: 151 RSREFLMKDAYSF 163
           R R   + DA++F
Sbjct: 138 RVRAISLNDAHNF 150


>gi|196012975|ref|XP_002116349.1| hypothetical protein TRIADDRAFT_50865 [Trichoplax adhaerens]
 gi|190580940|gb|EDV21019.1| hypothetical protein TRIADDRAFT_50865 [Trichoplax adhaerens]
          Length = 680

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 166/408 (40%), Gaps = 49/408 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G      +  ++R++  + G  E+  P + S+ LW+ SG +  Y  +M  
Sbjct: 298 SPGSCFFLPRGAHIYGILMQLMRDQYRKRGFHEVLSPNIYSSKLWMTSGHWQHYKDDMFT 357

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                D+  +  P +      +F    +S+R LP  + +  +  R+EL     G+ R R 
Sbjct: 358 FDVEKDQFGL-KPMNCPGHCVMFSHRPRSWRELPLRYAEFGVLHRNELSGTLSGLTRVRR 416

Query: 155 FLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEF 210
           F   DA+ F   D   +  K   +  F+ Y  I+  LG +  + +        G+     
Sbjct: 417 FQQDDAHIFCRDDQVKDEIKGCLD--FLKY--IYDTLGFQLKLFLSTRPDEFMGE----- 467

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I   D  E Q+                  D+      + E+  A Y    D+   ++ D+
Sbjct: 468 IATWDRAEQQL--------------RESLDEFGLKWGLKEKDGAFYGPKIDI---QVLDA 510

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGIGAMRVVAAV 328
           L    + +   ++    F   T+++L    T+ G +G D    V +    +G++  + AV
Sbjct: 511 LRRPHQCATIQLD----FQLPTRFNL----TYVGKNGDDTLRPVIIHRAILGSVERMIAV 562

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +  +  GK   WP  ++P +  +I + A  D+      +++++    V  D+     G+ 
Sbjct: 563 LCENFAGK---WPFWLSPRQAMVIPVAAKFDEYALQVRDQLHSAGFYVDVDL---APGDT 616

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +  +   A L  +   ++VG K   +  V ++ R   +  + ++ +VI
Sbjct: 617 MNKKVRNAQLAQYNFSMVVGQKECENKSVNVRSRNNQVYGEQTIVKVI 664


>gi|121712626|ref|XP_001273924.1| glycyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119402077|gb|EAW12498.1| glycyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 699

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++IE  +      + +G++ +P  +AP K+ ++ +  H    R   +++
Sbjct: 547 SFGIG--RILYSMIEHVYWSREGDEARGVLSFPPVIAPTKVLIVPLSTHASF-RPLLQQL 603

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 604 MTKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDTTKQVR 663

Query: 429 MSLEEVIN 436
            S EE++ 
Sbjct: 664 ASEEEILQ 671



 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   + + PEG K
Sbjct: 281 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEGGK 325


>gi|47226601|emb|CAG08617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 677

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IR E  R G  E+  P + ++ LW  SG +  Y 
Sbjct: 325 FFHDLSPGSCFFLPKGAFIYNTLIEFIRSEYRRRGFQEVVSPNIYNSKLWQTSGHWQHYS 384

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 385 ENMFSF-ESEKETFALKPMNCPGHCLMFDHRPRSWRELPLRMADFGVLHRNELSGALTGL 443

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 444 TRVRRFQQDDAHIF 457


>gi|327462380|gb|EGF08705.1| serine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|291165911|gb|EFE27958.1| threonine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 655

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 5/159 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   LP G K +  +   I + ++R  G +    P +  +DL+  SG +D Y + M  
Sbjct: 260 QGLPLLLPKGTKMVMKLQRWIEDLEDREWGYVRTKTPLMAKSDLYRISGHWDHYKEGMFV 319

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      ++   P        ++++  KSYR+LP+   +    FR+E      G+ R 
Sbjct: 320 LGDEEVDKEVFALRPMTCPFQYYVYKNTQKSYRDLPYRMGETSTLFRNEDSGEMHGLTRV 379

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           R+F + + ++  + P+ ++          + +   LGL+
Sbjct: 380 RQFTISEGHNV-VRPDQAEEELQNCLNLAVYVLTTLGLQ 417



 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 11/115 (9%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H   +G Y     R +A +IE  + GK   W   + P ++ ++ I   D+    A E++ 
Sbjct: 519 HRTSLGCYE----RTLAWLIEK-YAGKFPTW---LCPEQVRILPI--SDKYAEYA-EEVK 567

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             L++ G DV  D   E+IG +   A L   P  ++VG K  SD  V ++ R  G
Sbjct: 568 QELARNGVDVTVDHRSEKIGFKIRDARLNRLPYMLVVGEKEASDRTVSVRSRYAG 622


>gi|289208097|ref|YP_003460163.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943728|gb|ADC71427.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 638

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +     +   + G   +  P + + +LW  SG  D Y + M    
Sbjct: 262 GLVFWHPKGARIRREIEKYWYDMHEKAGYDFVVSPHIANLELWKTSGHADFYAESMYEPM 321

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +A    P +      +++  + SYR+LP  + ++   +R E+     G+MR R F 
Sbjct: 322 EDEHQAFQLKPMNCPFHVLMYKDRLHSYRDLPLRWAEMGTVYRREMSGALHGLMRVRGFT 381

Query: 157 MKDAYSF 163
             DA+ F
Sbjct: 382 QDDAHIF 388


>gi|332366431|gb|EGJ44182.1| serine--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|156098721|ref|XP_001615376.1| threonyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148804250|gb|EDL45649.1| threonyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 912

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   WLP G K  + +   +R E       E+  P + S DLW  SG Y +Y K+ + 
Sbjct: 456 SPGSCFWLPHGAKIYNKLIDFVRREYRIRLYDEVITPNVFSCDLWRTSGHYQNY-KDCMF 514

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +   K     P +      +F+    SYR+LP       +  R+E+     G+ R R 
Sbjct: 515 IFNVEQKEWGMKPMNCPGHCVMFKQLNASYRSLPIRLADFGVLHRNEISGSLSGLTRVRR 574

Query: 155 FLMKDAYSF 163
           F   D++ F
Sbjct: 575 FQQDDSHIF 583


>gi|212711437|ref|ZP_03319565.1| hypothetical protein PROVALCAL_02510 [Providencia alcalifaciens DSM
           30120]
 gi|212685893|gb|EEB45421.1| hypothetical protein PROVALCAL_02510 [Providencia alcalifaciens DSM
           30120]
          Length = 653

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/427 (19%), Positives = 157/427 (36%), Gaps = 54/427 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L + +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 241 AAYLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKS 298

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW  +G +++Y   M   +  N +  +  P +      IF   +K
Sbjct: 299 YNYQEVKGPFMMDRVLWERTGHWENYKDAMFTTSSENREYCV-KPMNCPGHVQIFNQGLK 357

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE--GSKHSYNKMFVS 180
           SYR+LP    +     R+E      G+MR R F   DA+ F    +  G   S  +M   
Sbjct: 358 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQILGEVTSCIEMIYD 417

Query: 181 YLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              ++   G + I ++  + P   IG D   +    A+        SK       P E  
Sbjct: 418 ---VYSTFGFEKIVVKLSTRPEKRIGTD---DMWDTAEADLANALKSKGIEFEYQPGEGA 471

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L+D L        R  + G +      + LP
Sbjct: 472 FYGPKIEFT--------------------LYDCLD-------RAWQCGTV---QLDFFLP 501

Query: 298 --MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             ++A++ G + +    V +    +G++     ++   + G    +P  +AP ++ ++NI
Sbjct: 502 GRLNASYVGENNERITPVMIHRAVLGSLERFIGILTEEYAG---FFPTWLAPQQVVVMNI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  +++ ++L  VG     D   E+IG +     L   P  ++ G K V   
Sbjct: 559 TDSQA---DYVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVESG 615

Query: 415 KVEIKHR 421
           KV ++ R
Sbjct: 616 KVSVRTR 622


>gi|116075451|ref|ZP_01472711.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116067648|gb|EAU73402.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 609

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 146/393 (37%), Gaps = 45/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 229 GLVFWHPRGARMRLLIEDFWRQAHFEGGYELLYTPHVADISLWKTSGHLDFYSESMFGPM 288

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 289 VVDEREYQLKPMNCPFHVLTYASTLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 347

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIV 212
              DA+ F L PE       ++     RI      K+  +   + P   IG D   +   
Sbjct: 348 TQDDAHVFCL-PEQISDEILRILDLTERILSTFDFKNYEINLSTRPEKSIGDDAVWD--- 403

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LA  G  +    K + D+ +      F                Y    D+   K+ D++ 
Sbjct: 404 LATKGLIEALERKGW-DYKVDEGGGAF----------------YGPKIDL---KIEDAIG 443

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIES 331
              + S   ++    F    ++ L     +  AD       M    I G++     ++  
Sbjct: 444 RMWQCSTIQLD----FNLPERFKL----DYVAADSSKQRPIMIHRAIFGSLERFFGIMTE 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++ G    W   +AP +I L+ +   D+V +   E +  +L   G     D  GE++G  
Sbjct: 496 NYAGDFPFW---LAPEQIRLLPVT--DEV-QSYAESLCDQLKAAGVRASVDRSGERLGKL 549

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               + +  P+  ++G+K    +   ++ R  G
Sbjct: 550 IRTGEKMKIPVLAVIGAKEAEQASASLRSRRDG 582


>gi|46121741|ref|XP_385425.1| hypothetical protein FG05249.1 [Gibberella zeae PH-1]
          Length = 553

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADL 79
            +++L+  M+  +++  G +   PL     + +    +      G  E + P  L S  L
Sbjct: 62  QEVVLKAEMVEYYTEISGFFVLRPLSMHIWNEIRKWFQGHIEEMGVDETNFPMFLSSKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 122 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L
Sbjct: 182 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGAEVLEILELYAGVYEKL 234



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 11/167 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           + RGI+       G  +S     T +     G   +V   S+G+ + RV+  ++    D 
Sbjct: 266 NGRGIQGATSHALGQNFSKMFDITVEDPQKQGSHIHVWQNSWGL-STRVIGVMVMIHGDD 324

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVC-------RDACEKIYARLSKVGCDVFWD-DMGEQ 387
           KG++ P  VA  ++ ++ +  + +          D  E+I A L K G  V  D   G  
Sbjct: 325 KGLVLPPRVAKTQVVIVPVGINKKTTPEEKKKHEDQVEEIRANLKKAGVRVTADWREGYT 384

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +F   +L G PL+V  G K  +   +    R TG + ++++ +V
Sbjct: 385 PAWKFNDWELKGVPLRVEFGPKDAAKGVISTARRDTGEKGEIAIADV 431


>gi|327467137|gb|EGF12647.1| serine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|302865885|ref|YP_003834522.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302568744|gb|ADL44946.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E V+ +     I SYR+LP    Q     R ELRPR   +R+ EFL ++ ++ 
Sbjct: 104 VVVRPTSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQEGHTA 162

Query: 164 DLTPEGSK--------HSYNKMFVSYLRIFHRLGLKS 192
             T E ++         +Y  + V+ L I   +GLK+
Sbjct: 163 HATREDARAYARRILHEAYEDLMVNVLGIPVVVGLKT 199


>gi|148675291|gb|EDL07238.1| threonyl-tRNA synthetase-like 2, isoform CRA_a [Mus musculus]
          Length = 365

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 2/139 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y 
Sbjct: 170 FFHDLSPGSCFFLPRGAFIYNALMDFIREEYHKRNFTEVLSPNMYNSKLWETSGHWQHYS 229

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M    D         P +      +F    +S+R +P  F    +  R+EL     G+
Sbjct: 230 NNMFTF-DVEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRFADFGVLHRNELSGTLSGL 288

Query: 150 MRSREFLMKDAYSFDLTPE 168
            R R F   DA+ F +  +
Sbjct: 289 TRVRRFQQDDAHIFCMVEQ 307


>gi|78187351|ref|YP_375394.1| prolyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|114152226|sp|Q3B2T0|SYP_PELLD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78167253|gb|ABB24351.1| prolyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 481

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G     G  ++      F+  D +  YV   S+G+ + R++ A+I +  D +G++
Sbjct: 220 KALQAGTSHNLGQNFAKAFDCQFQTKDSRLDYVWATSWGV-STRLIGALIMAHSDDRGLV 278

Query: 340 WPDSVAPFKISLINIKAHDQVC-RDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADL 397
            P  +A  ++ +I I   D+    +  + + A L   G   F D   +   G +FA  +L
Sbjct: 279 LPPKLASRQVVIIPILRGDKAAVLEQADAMAASLKAAGIPAFVDGSEQNSPGWKFAEYEL 338

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            G P+++ VG + +         R T  + ++ L E +
Sbjct: 339 QGIPVRIEVGPRDIEKGICIAARRDTLEKSELQLGETL 376



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TP
Sbjct: 108 PTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATP 166

Query: 168 EGSKHSYNKMFVSY 181
           E S+    +M   Y
Sbjct: 167 EESQEEVMRMINVY 180


>gi|57641105|ref|YP_183583.1| threonyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|73919819|sp|Q5JGC8|SYT_PYRKO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57159429|dbj|BAD85359.1| Threonyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 626

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 132/324 (40%), Gaps = 50/324 (15%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SYRNLP   Y++ +  FR E      G+ R R F M D ++     + +   + K +   
Sbjct: 312 SYRNLPLRMYELTRYSFRREKSGELSGLRRLRAFTMPDMHTVARDLKQAMDEFKKQYKLS 371

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
           + +   +GL                        +  E  +  ++DF +     +N DF  
Sbjct: 372 MEVLKGVGLTP----------------------EDYEVAIRFTRDFWE-----QNRDFIV 404

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               II    ++E W   +            D+L +   +S   I+V +   FG KY   
Sbjct: 405 ELAKIIGKPVLIEMWDQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFGIKYY-- 462

Query: 298 MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIE--SSHDGKGI--IWPDSVAPFKISL 351
                   +GK+   + +     GA+ RV+ A++E  +    KGI  ++P  ++P ++ +
Sbjct: 463 ------DEEGKERTPLILHCSPSGAIERVMYAILEKQAKLQEKGIKPMYPLWLSPIQVRV 516

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +   D+V  D    +  +L      V  DD G+++  +   A+    P  ++VG    
Sbjct: 517 IPV--SDEVM-DYALYVAGKLEGAKIRVDVDDTGDRLNKKIRKAEKEWIPYIIVVGRNEK 573

Query: 412 SDSKVEIKHRLTGIREDMSLEEVI 435
             + V ++ R  G + +M LE++I
Sbjct: 574 EQNTVTVRRRSDGRQVEMQLEDLI 597


>gi|312214020|emb|CBX94022.1| similar to prolyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 561

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 124/334 (37%), Gaps = 71/334 (21%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E  M   F   I+S+R+LP    Q     R E +     +RSREFL ++ 
Sbjct: 146 EKPVAVRPTSETAMYPYFARKIQSHRDLPLKLNQWNNVVRWEFKHPMPFIRSREFLWQEG 205

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT E +     ++   Y  ++    L ++P+      + G              T+
Sbjct: 206 HTAHLTEEEASAEVLQILDWYSDVYQ--NLLAVPV------VKG--------------TK 243

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV---HNEKLFDSLPENKRV 277
               K    FP     T  +  I       Q     AATS     H  K+F+   E+   
Sbjct: 244 TVNEK----FPGADYTTTIEGFIPATGRGIQ-----AATSHCLGQHFSKMFNITVEDPTA 294

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
              G +  H+  + T + L                          R +  +I +  D +G
Sbjct: 295 KENG-KSEHVHVWQTSWGL------------------------TTRSIGVMILTHGDNRG 329

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--------- 388
           ++ P  VA  ++ LI +    ++  +  E +Y+++  +  D+   ++G ++         
Sbjct: 330 LVIPPRVAEIQVVLIPVGVTAKMSAEDKEALYSKVKNIADDLH--EVGVRVETDYREGYS 387

Query: 389 -GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            G +F   +L G PL++  G K      V    R
Sbjct: 388 PGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRR 421



 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 43/205 (20%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIE 330
            + RGI+       G  +S   + T +    K++      +V   S+G+   R +  +I 
Sbjct: 264 ATGRGIQAATSHCLGQHFSKMFNITVEDPTAKENGKSEHVHVWQTSWGL-TTRSIGVMIL 322

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-- 388
           +  D +G++ P  VA  ++ LI +    ++  +  E +Y+++  +  D+   ++G ++  
Sbjct: 323 THGDNRGLVIPPRVAEIQVVLIPVGVTAKMSAEDKEALYSKVKNIADDLH--EVGVRVET 380

Query: 389 --------GSQFAVADLLGFPLQVIVGSK------------------------FVSDSKV 416
                   G +F   +L G PL++  G K                         V + K 
Sbjct: 381 DYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRDIDDKDAARGTTSVDNIKT 440

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           EI   L  I+ DM       Y  HR
Sbjct: 441 EIPKLLEQIQSDMFERADKKYREHR 465


>gi|315502429|ref|YP_004081316.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409048|gb|ADU07165.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E V+ +     I SYR+LP    Q     R ELRPR   +R+ EFL ++ ++ 
Sbjct: 104 VVVRPTSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQEGHTA 162

Query: 164 DLTPEGSK--------HSYNKMFVSYLRIFHRLGLKS 192
             T E ++         +Y  + V+ L I   +GLK+
Sbjct: 163 HATREDARAYARRILHEAYEDLMVNVLGIPVVVGLKT 199


>gi|15228692|ref|NP_191771.1| tRNA synthetase class II (G, H, P and S) family protein
           [Arabidopsis thaliana]
 gi|30695549|ref|NP_850736.1| tRNA synthetase class II (G, H, P and S) family protein
           [Arabidopsis thaliana]
 gi|6899922|emb|CAB71872.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|16648885|gb|AAL24294.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|22136084|gb|AAM91120.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|332646791|gb|AEE80312.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
 gi|332646792|gb|AEE80313.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 530

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RG++       G  ++      F+    +   V   S+   + R +  +I +  D KG
Sbjct: 265 TGRGVQGATSHCLGQNFAKMFEINFENEKAETEMVWQNSWAY-STRTIGVMIMTHGDDKG 323

Query: 338 IIWPDSVAPFKISLINIK---AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQF 392
           ++ P  VA  ++ +I +    A+ Q   DAC    + L + G     +D+ +    G ++
Sbjct: 324 LVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIRAE-EDLRDNYSPGWKY 382

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +  ++ G PL++ +G + + + +V    R  G++ED+
Sbjct: 383 SDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDI 419


>gi|262283251|ref|ZP_06061018.1| seryl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261503|gb|EEY80202.1| seryl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|171687735|ref|XP_001908808.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943829|emb|CAP69481.1| unnamed protein product [Podospora anserina S mat+]
          Length = 514

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 18/154 (11%)

Query: 28  RTGMIHQH--SKGIYS-----WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           RT  +HQ   +  IYS     +LP G +  + + + +R +  R G  E+  P +   DLW
Sbjct: 81  RTLGLHQKLFTTSIYSPGSAFFLPSGTRIFNRLVSFLRNQYVRYGFEEVITPLIYKKDLW 140

Query: 81  VESGRYDSYGKEMLRL----------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +SG  ++Y ++M  +           +  D+     P +      IF S  +S+R+LP 
Sbjct: 141 AKSGHLENYAQDMYTVTGARHASPEETEETDREYGLKPMNCPGHCLIFSSQKRSFRDLPI 200

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            +       R+E      G+ R R F   D + F
Sbjct: 201 RYADFSPLHRNENTGSLTGLTRVRRFHQDDGHIF 234


>gi|289168522|ref|YP_003446791.1| seryl-tRNA synthetase [Streptococcus mitis B6]
 gi|288908089|emb|CBJ22929.1| seryl-tRNA synthetase [Streptococcus mitis B6]
          Length = 424

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDSN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|253744023|gb|EET00284.1| Threonyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 695

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M H+++ G   ++  G +    + A IRE  +     E+  PT  + DLW  SG    Y 
Sbjct: 292 MTHKYAPGAPMFMNNGTRIYRKLEAFIRELLHEFDYEEVMTPTFLNTDLWGISGHLQHYK 351

Query: 91  KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           + M  L  +      YG  P +      +++SH  S + LP    +  +  R+EL     
Sbjct: 352 ENMFLLERKEKTDPQYGLKPMNCPCHCLLYKSHHHSVQELPIRMAEFGVVHRNELSGALS 411

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R   F   DA+ F
Sbjct: 412 GLTRVVRFEQDDAHIF 427


>gi|153950997|ref|YP_001397450.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166223330|sp|A7H1S0|SYT_CAMJD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|152938443|gb|ABS43184.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 602

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/414 (19%), Positives = 161/414 (38%), Gaps = 49/414 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WL  G +    +  ++ +     G   +  P L  AD W  SG Y +Y KE +   
Sbjct: 228 GLPIWLGNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHYANY-KENMYFT 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
             +++     P +      +++S ++SYR+LP  F++  +  R E      G+ R REF 
Sbjct: 287 QIDEQEYGIKPMNCVGHIKVYQSDVRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFT 346

Query: 157 MKDAYSFDLTPEGSKHSYNKM-FV-SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             DA+ F +  +  +     + FV + +++F                   D S+E  +  
Sbjct: 347 QDDAHIFCMPSQIKEQVLEILAFVDNLMKLF-------------------DFSYEMEI-- 385

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            T   +     +  +    +     D+      I E   A Y    D+   K+ D+L   
Sbjct: 386 STKPEKAIGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPKIDI---KITDAL--- 439

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADG---KDHYVQMGSYGIGAMRVVAAVIES 331
                R  + G I      ++LP     +  D    K   V +    +G+      ++  
Sbjct: 440 ----KRKWQCGTI---QVDFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTE 492

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              G+   +P  +AP  + ++ I +AH    ++    I   L ++  D    +  E +  
Sbjct: 493 HCAGE---FPFFIAPTAVGIVPIGEAHIAYAKE----IQKELLELNIDSEVYEKNESLSK 545

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  +A+    P+ +++G   V+   V ++ R    ++++SL+E I     + S 
Sbjct: 546 KIRIAEKQKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|332364654|gb|EGJ42423.1| serine--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|307330032|ref|ZP_07609183.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306884293|gb|EFN15328.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 471

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 132/345 (38%), Gaps = 71/345 (20%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++ + F   ++SYR+LP    Q     R EL      
Sbjct: 99  GKEL-------EEPVVVRPTSETIVNEYFSKWVQSYRDLPLLINQWANVVRWEL------ 145

Query: 150 MRSREFLMKDAYSFDLTPEG-SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            R R FL    +   L  EG + H+  +    +    HR                     
Sbjct: 146 -RPRLFLRTTEF---LWQEGHTAHASYEDARDFAARIHR--------------------- 180

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                      +V+    FM+           D+++++ ++ + TA       ++   L 
Sbjct: 181 -----------EVYAR--FME-----------DVLAMDVVLGRKTARERFAGALNTLTLE 216

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + + K      +++G     G  ++     ++   DG+   V   S+G    R+V A+
Sbjct: 217 GMMGDGK-----ALQLGTSHELGQNFARAFHTSYLSKDGEQELVWQTSWG-STTRMVGAL 270

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +    D  G+  P  +A  ++ ++ IK  D V     E I   LS  G  V  DD  +  
Sbjct: 271 VMMHGDDNGLRIPPRLASIQVVVLAIKGDDAVLAKVRE-IGELLSAAGVRVHVDDRTDTP 329

Query: 389 GSQFAV-ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             + AV  +L G P++V VG + +      +  R+ G +E +  E
Sbjct: 330 FGRRAVDWELKGVPVRVEVGPRDLESGTAMVARRIPGGKEPVRAE 374


>gi|330833399|ref|YP_004402224.1| hypothetical protein SSUST3_1623 [Streptococcus suis ST3]
 gi|329307622|gb|AEB82038.1| hypothetical protein SSUST3_1623 [Streptococcus suis ST3]
          Length = 424

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +    +G+Y  + ++   LAD N    +  PT E  +T+ +R+ I  
Sbjct: 189 GYQEIITPYMVNHNSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYYRNEILE 245

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++LP  F  +   FR E     R   G++R  +F   +   F  TPE S     KM  +
Sbjct: 246 EKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-ATPEQSYDELEKMTAN 304

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              I  +LGL    +   +G +G
Sbjct: 305 AENILQKLGLPYRVLALCTGDMG 327


>gi|326926536|ref|XP_003209455.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like,
           partial [Meleagris gallopavo]
          Length = 635

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y 
Sbjct: 313 FFHDLSPGSCFFLPRGAFLYNTLTDFIREEYHKRNFTEVVSPNIFNSKLWETSGHWQHYS 372

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    D   +     P +      +F    +S+R +P       +  R+EL     G+
Sbjct: 373 ENMFSF-DIEKETFALKPMNCPGHCLMFAHRPRSWREMPLRLADFGVLHRNELSGTLSGL 431

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 432 TRVRRFQQDDAHIF 445


>gi|307706061|ref|ZP_07642880.1| seryl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307618461|gb|EFN97609.1| seryl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 424

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDSN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|307596038|ref|YP_003902355.1| glycyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307551239|gb|ADN51304.1| glycyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 591

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 8/121 (6%)

Query: 320 GAMRVVAAVIESSH---DGKGII-WPDSVAPFK-ISLINIKAHDQVCRDACEKIYARLSK 374
           G  R+V   +E ++   +GK ++  P  +AP K + L  IK  + V     ++I+  LS 
Sbjct: 446 GVDRIVYVTLEHAYTEVNGKPLLRLPPDIAPIKAVVLPIIKKQEYVS--IGKRIFKELSL 503

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G    +DD G  IGS++A  D +G P  + +  K  +D+ V I+ R T  +  +++ EV
Sbjct: 504 AGIRAVYDDDG-TIGSRYAKYDSIGVPFAITIDDKTPADNTVTIRDRDTKAQVRVNISEV 562

Query: 435 I 435
           I
Sbjct: 563 I 563


>gi|125718717|ref|YP_001035850.1| seryl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166223300|sp|A3CQ45|SYS_STRSV RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|125498634|gb|ABN45300.1| Seryl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|270293326|ref|ZP_06199535.1| serine--tRNA ligase [Streptococcus sp. M143]
 gi|270278175|gb|EFA24023.1| serine--tRNA ligase [Streptococcus sp. M143]
          Length = 424

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|15618715|ref|NP_225001.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836339|ref|NP_300863.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752234|ref|NP_445602.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242166|ref|NP_877107.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|8928382|sp|Q9Z7A0|SYT_CHLPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4377117|gb|AAD18944.1| Threonyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189978|gb|AAF38837.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8979180|dbj|BAA99014.1| threonyl tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|33236677|gb|AAP98764.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 635

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 89/435 (20%), Positives = 163/435 (37%), Gaps = 52/435 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD  +   KL L +    + S G+  + P G    D +    ++     G  E+
Sbjct: 230 IEEAKKRDHRVLGAKLDLFSQ--QESSPGMPFFHPRGMIVWDALIRYWKQLHTAAGYKEI 287

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P L +  LW  SG +D+Y   M  L  D  D A+   P +       +++ + SY+  
Sbjct: 288 LTPQLMNRQLWEVSGHWDNYKANMYTLQIDDEDYAI--KPMNCPGCMLYYKTRLHSYKEF 345

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++    R E      G+MR R F   DA+ F LTPE  +     +      ++  
Sbjct: 346 PLRVAEVGHVHRQEASGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILQLVSTLYGT 404

Query: 188 LGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            GL+    +  R E   IG D   E              + D ++  +    T F  I+ 
Sbjct: 405 FGLEYHLELSTRPEKDTIGDDSLWEL-------------ATDALNRALVQSGTPF--IVR 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
                    A Y    D+H           K    R  + G I    +   ++ L  + T
Sbjct: 450 PGE-----GAFYGPKIDIH----------VKDAIQRTWQCGTIQLDMFLPERFELEYT-T 493

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            +G   K   V +     G++     ++  +  G+  +W   ++P ++ +I +       
Sbjct: 494 AQGT--KSVPVMLHRALFGSIERFLGILIENFKGRFPLW---LSPEQVRIITVADRHIPR 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+ + RL   G  V  DD  E +  +   A  +     + +G   ++++ + ++ R
Sbjct: 549 AKELEEAWKRL---GLVVTLDDSSESVSKKIRNAQNMQVNYMITLGDHEINENVLAVRTR 605

Query: 422 LTGIREDMSLEEVIN 436
              +  D+S+E  +N
Sbjct: 606 DNRVINDVSVERFLN 620


>gi|67903696|ref|XP_682104.1| hypothetical protein AN8835.2 [Aspergillus nidulans FGSC A4]
 gi|40740933|gb|EAA60123.1| hypothetical protein AN8835.2 [Aspergillus nidulans FGSC A4]
          Length = 1309

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +++E  +      + +G++ +P  +AP K+ L+ + ++    R   +++
Sbjct: 490 SFGIG--RILYSLMEHVYYYREGDEARGVLSFPPVIAPTKVLLVPLSSNPAF-RPMVQEL 546

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  V V  + V D+ + ++ R +  +  
Sbjct: 547 TTKLRRLGVSSRVDDSSASIGKRYARNDELGTPFGVTVDFQSVKDNTITLRDRDSTKQVR 606

Query: 429 MSLEEVIN 436
            S EE++ 
Sbjct: 607 ASQEEILQ 614



 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 239 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPEGGK 281


>gi|115375454|ref|ZP_01462714.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115367497|gb|EAU66472.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 616

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  + G   W P G      ++  +R     TG +E+  P + +  LW  SG +  Y +
Sbjct: 235 FHPFAPGSAFWSPKGTTLYQTLSQWMRRLTAETGYVEIKTPLMFNKGLWEASGHWGKYKE 294

Query: 92  EMLRLADRNDKAMIYG------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            M  + D       +       P+H       F+ H  SYR+LP   +   +  R+E   
Sbjct: 295 NMFLVLDNESGEHDFSLKPMNCPSHHLYFG--FKRH--SYRDLPLRLHTQDVLHRNEAAG 350

Query: 146 RF-GVMRSREFLMKDAYSFDLTPE-GSK---------HSYNKMFVSYLRIF-----HRLG 189
              G+ R R+F   DA+ +    + G +         H YN + + Y   F      RLG
Sbjct: 351 SLGGLTRVRQFAQDDAHIYCTEDQIGDEVRRFVKLLDHVYNAVGLKYSAKFSTRPEQRLG 410

Query: 190 LKSIPMRAESGPIG 203
             ++  RAES   G
Sbjct: 411 EDALWDRAESALEG 424


>gi|331269136|ref|YP_004395628.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329125686|gb|AEB75631.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +   G   + P G    + +    RE   + G  E+  P + +  LW +SG +D Y +
Sbjct: 255 LKEEGPGFPFFYPKGMILRNTLENYWREMHEKAGYGEIRTPIILNEKLWHQSGHWDHYKE 314

Query: 92  EM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
            M     D  D A+   P +      +++S + SYR LP    ++ L  R E      G+
Sbjct: 315 NMYFTKIDGEDYAI--KPMNCPGSILVYKSDLHSYRELPIRLGELGLVHRHEYSGALHGL 372

Query: 150 MRSREFLMKDAYSF 163
           MR R F   DA+ F
Sbjct: 373 MRVRNFTQDDAHIF 386



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 71/140 (50%), Gaps = 10/140 (7%)

Query: 301 TFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ GADG+ H   M    I G++     ++   + G    +P  +AP ++ ++NI   +Q
Sbjct: 494 SYVGADGEKHRPVMAHRVIFGSIERFIGILTEHYAGA---FPTWLAPVQVKIMNI-TDNQ 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V  + C++I   L + G  V  D   E+IG +   A L   P  +++G K ++++ + ++
Sbjct: 550 V--EYCKEIEKTLKENGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNENTIAVR 607

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G   D+   +++++ +
Sbjct: 608 SRKQG---DLGAMQLVDFVA 624


>gi|312091207|ref|XP_003146898.1| hypothetical protein LOAG_11329 [Loa loa]
 gi|307757937|gb|EFO17171.1| hypothetical protein LOAG_11329 [Loa loa]
          Length = 574

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 121/319 (37%), Gaps = 70/319 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E V+   +   I+SYR+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 182 PTSETVIYPSYAKWIQSYRDLPLRLNQWCNVVRWEFKHPTPFLRTREFLWQEGHTAFQTK 241

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + +++    +   Y +++    L +IP                +      E + F   DF
Sbjct: 242 QEAENEVFIILDLYAKVY--TDLLAIP----------------VTKGRKSEKEKFAGGDF 283

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              + VE +                        V+ RGI+    
Sbjct: 284 ------------------TTTVEAYVP----------------------VNGRGIQGATS 303

Query: 288 FYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            + G  +S     +F+  + G   +    S+G+   R + A+I    D  G++ P  VAP
Sbjct: 304 HHLGQNFSKMFDISFEDPESGAKTFAWQNSWGM-TTRTIGAMIMIHSDNDGLVLPPRVAP 362

Query: 347 FKISLINIKAHDQVCRDACEKIYARL---------SKVGCDVFWDDMGEQIGSQFAVADL 397
            ++ +I +    Q+ +   ++I+ +          S++  D    D     G +F   +L
Sbjct: 363 IQVIIIPVGITSQMDKQIKQEIFIKAEEIMRILENSRIRVDTDLRD-NYSPGWKFNHWEL 421

Query: 398 LGFPLQVIVGSKFVSDSKV 416
            G P+++ +G K +  S+V
Sbjct: 422 KGVPIRLELGPKDIKKSQV 440


>gi|307704266|ref|ZP_07641185.1| seryl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307622177|gb|EFO01195.1| seryl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 424

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDSN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|307710546|ref|ZP_07646982.1| seryl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307618699|gb|EFN97839.1| seryl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 424

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDSN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|307708238|ref|ZP_07644705.1| seryl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307615684|gb|EFN94890.1| seryl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 424

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDSN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|189183871|ref|YP_001937656.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|238692247|sp|B3CSS5|SYT_ORITI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189180642|dbj|BAG40422.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 648

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           ++G+  W   G      +   I  +  R G IE++ P + +  LW +SG ++ + + M  
Sbjct: 260 AQGMPFWHSKGWTIFKIIKDYISCQIQRAGYIEVNTPMVLNQKLWEKSGHWEKFRENMFT 319

Query: 96  L------ADRN--------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           L       D N          A+   P +      IF   IKSYR+LP    +     R 
Sbjct: 320 LDTNAAEQDHNLIKDSIETKCALALKPMNCPGHIQIFNYTIKSYRDLPLRMAEFGSCHRY 379

Query: 142 ELR-PRFGVMRSREFLMKDAYSF 163
           E     +G+MR R F+  DA+ F
Sbjct: 380 EPSGALYGLMRVRSFVQDDAHIF 402


>gi|308811795|ref|XP_003083205.1| putative prolyl-tRNA synthetase [Oryza sativa (ISS) [Ostreococcus
           tauri]
 gi|116055084|emb|CAL57480.1| putative prolyl-tRNA synthetase [Oryza sativa (ISS) [Ostreococcus
           tauri]
          Length = 553

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G     G  ++     TF    G+  YV   S+G+ + R+V  +I +  D  G+ 
Sbjct: 291 KALQAGTSHNLGDNFAKAFDTTFLNDQGETKYVHQSSWGV-STRLVGGIIMTHGDDAGLT 349

Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVA 395
            P  +AP ++ ++ I    A       + + I + L   G     D D  +  G +F   
Sbjct: 350 LPPKLAPIQVVVVPIWKKDAEKDEVMASVDGIISTLEGAGVRTHLDADQSKSPGWKFNQY 409

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++ G P+++ VG K V+     I  R
Sbjct: 410 EMKGVPIRIEVGPKDVAKGACVIARR 435


>gi|39725443|emb|CAE45679.1| Threonyl-tRNA synthetase [Streptomyces parvulus]
          Length = 675

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 2/160 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G    D +    R+ + + G   +  P +   DL+  SG    Y +++   
Sbjct: 283 RGLPLWLPNGAIIRDELEDWARKTERKLGYKRVVTPHITQEDLYYLSGHLPYYAEDLYAP 342

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            D + +     P +      ++++   SYR+LP+   +    +R E   +  G+MR+R F
Sbjct: 343 IDIDGEKYYLKPMNCPHHHMVYKARPHSYRDLPYKVAEYGTVYRFERSGQLHGMMRTRGF 402

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              DA+ +  T + +K  + ++   +   +  LG+    M
Sbjct: 403 SQNDAHIY-CTADQAKDQFLEVMRMHADYYRTLGISDFYM 441


>gi|293400866|ref|ZP_06645011.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305892|gb|EFE47136.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 577

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 161/426 (37%), Gaps = 53/426 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +++ G+  +LP G    + +     EE  +     +  P + S +LW  SG + +Y 
Sbjct: 194 MMSEYAPGMPFFLPNGMIIRNLLENFWYEEHTKENYKFIKTPIMMSKELWEVSGHWANY- 252

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +      +F++ + SY++LP    ++    R E      G+
Sbjct: 253 KENMYTTMVDDREFAIKPMNCPGSLLVFKNGLHSYKDLPLRMGELGQVHRHEASGALNGL 312

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F + P+  +    ++     R++   GL     +  R E   I GDL
Sbjct: 313 FRVRTFTQDDAHIF-MRPDQIESEVKELINFIDRVYSIFGLSYRIELSTRPEKKYI-GDL 370

Query: 207 S---HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           +        LAD       C     D+ +   +  F                Y    D H
Sbjct: 371 AIWEKSEKALADA------CVSAGKDYKVNPGDGAF----------------YGPKLDFH 408

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
              + DSL        R  + G I       +LP     T+   DG K   V +     G
Sbjct: 409 ---IKDSL-------GREWQCGTI---QLDMNLPERFDLTYVEKDGTKVRPVMLHRVIFG 455

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++   + G    +P  +AP ++ ++ +  H +    A   I  +L  +G    
Sbjct: 456 SIERFIGILIEHYAGH---FPTWLAPTQVMVVPV--HYERHAQAANAINEKLLAMGFRSK 510

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D   E++G +   A L   P Q+++G   V  + V ++   +     M +EE I   S 
Sbjct: 511 SDARNEKLGYRIREAQLAKIPYQLVIGDGEVEANTVTVRRAQSKESVTMPVEEFIAKLSA 570

Query: 441 RFSNNR 446
                R
Sbjct: 571 EVKEKR 576


>gi|196230454|ref|ZP_03129316.1| prolyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196225384|gb|EDY19892.1| prolyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 508

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + I+ G   + G  ++      F+  +GK+ Y    S+G+ + R++  V+ +  D  G+I
Sbjct: 237 KAIQAGTSHFLGQNFAKASEIKFQSREGKEEYAWTTSWGV-STRLIGTVLMAHSDDDGLI 295

Query: 340 WPDSVAPFKISLINIKAHDQVCRD----ACEKIYARL-------SKVGCDVFWDDMGEQI 388
            P  +AP +I ++ I    +  RD    A +K+ A L        K+  +V   D+G   
Sbjct: 296 LPPRIAPAQIVILPIAPKPET-RDAVFAAADKLAAELRAQTAFGEKISVEVDKRDIGGGT 354

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            S   +    G P+++ +G + +    V +  R  G +E
Sbjct: 355 KSWEWIKK--GVPIRIELGPRDLEKGTVAVARRDRGPKE 391


>gi|324992052|gb|EGC23974.1| serine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|325697635|gb|EGD39520.1| serine--tRNA ligase [Streptococcus sanguinis SK160]
 gi|327459354|gb|EGF05700.1| serine--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327490570|gb|EGF22351.1| serine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|323350377|ref|ZP_08086041.1| serine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322123450|gb|EFX95126.1| serine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|72080721|ref|YP_287779.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
 gi|114152215|sp|Q4A7Y3|SYP_MYCH7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71913845|gb|AAZ53756.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 479

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/143 (18%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++     + G  ++      +K  + K       S+G+ + R++ A++    D  G+I
Sbjct: 222 RALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVHSDDNGLI 280

Query: 340 WPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +P  +AP ++ ++      +Q  +   ++I   L         DD  +QIG +   +++ 
Sbjct: 281 FPPKIAPIQVDILEFFSKKNQEVKIFAKRIAKILKNAKIAYKIDDTDQQIGYKINNSEVH 340

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+++ +G   V ++++ +  R
Sbjct: 341 GAPIRIEIGPNEVKNNQICLVRR 363


>gi|328944998|gb|EGG39155.1| serine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|310821380|ref|YP_003953738.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394452|gb|ADO71911.1| Threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 642

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  + G   W P G      ++  +R     TG +E+  P + +  LW  SG +  Y +
Sbjct: 261 FHPFAPGSAFWSPKGTTLYQTLSQWMRRLTAETGYVEIKTPLMFNKGLWEASGHWGKYKE 320

Query: 92  EMLRLADRNDKAMIYG------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            M  + D       +       P+H       F+ H  SYR+LP   +   +  R+E   
Sbjct: 321 NMFLVLDNESGEHDFSLKPMNCPSHHLYFG--FKRH--SYRDLPLRLHTQDVLHRNEAAG 376

Query: 146 RF-GVMRSREFLMKDAYSFDLTPE-GSK---------HSYNKMFVSYLRIF-----HRLG 189
              G+ R R+F   DA+ +    + G +         H YN + + Y   F      RLG
Sbjct: 377 SLGGLTRVRQFAQDDAHIYCTEDQIGDEVRRFVKLLDHVYNAVGLKYSAKFSTRPEQRLG 436

Query: 190 LKSIPMRAESG 200
             ++  RAES 
Sbjct: 437 EDALWDRAESA 447


>gi|221134666|ref|ZP_03560969.1| threonyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 93/452 (20%), Positives = 163/452 (36%), Gaps = 72/452 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +T  + H  + + G+  W   G      + + IR
Sbjct: 227 KQLKAYLNRLEE----AEKRDHRKIGKTLDLFHWQEEAPGMVFWHNDGWSIYTELESFIR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++  +    E+  P +    LW +SG +  Y   M        +  I  P +      IF
Sbjct: 283 KKLTQYDYQEVKGPLMMDRSLWEKSGHWGKYSSNMFTTESEKREYAI-KPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQILDEVSGC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G + I ++  +                                 P E  
Sbjct: 401 IKMVYDTYETFGFEKIVVKLSTR--------------------------------PEERV 428

Query: 238 DFDDIISLNSIVEQWTAPYAATSDV--HNEKLFDSLPENKRVSARGIE------VGHIFY 289
             DDI         W    +A +D    N+  FD  P         IE      +   + 
Sbjct: 429 GSDDI---------WDKTESALADALKANDIEFDYQPGEGAFYGPKIEFTLHDCLDRAWQ 479

Query: 290 FGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDS 343
            GT    +S+P  + +T+   DG+     M    I G++     ++   + G    W   
Sbjct: 480 CGTVQLDFSMPGRLGSTYVAEDGERKVPVMIHRAILGSLERFIGILTEEYAGHFPTW--- 536

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP +  ++NI        + C K+  + ++    V  D   E+IG +     L   P  
Sbjct: 537 LAPTQAVILNITDKQS---EYCTKL-QKTARNAIRVKPDLRNEKIGFKIREHTLKRVPYM 592

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           ++VG K +   +V ++ R       MS+E+ +
Sbjct: 593 LVVGDKEMEAGEVAVRTRKGDDLGKMSIEDFL 624


>gi|113460987|ref|YP_719054.1| threonyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123031343|sp|Q0I3M2|SYT_HAES1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112823030|gb|ABI25119.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Haemophilus
           somnus 129PT]
          Length = 642

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 148/411 (36%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G   I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTDIFVKLSTRPEKRIGED-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               V+ D  E  +  +       +     +++       I E   A Y    +      
Sbjct: 432 ----VMWDRAEQGLANA-------LKHNGLEYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D          R  + G I      ++LP  + AT+   D       M    I G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLDATYVAEDNARRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+  + S+ G  V  D  
Sbjct: 521 FIGIITEEYAG---FFPTWLAPIQAVVMNITDSQA---DYVQKVVKQFSEAGLRVKADIR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E++G +     L   P  ++ G K + ++K+ ++ R        S+EE +
Sbjct: 575 NEKVGFKIREHTLRRVPYMLVCGDKEIVENKIAVRTRKGTDLGTFSVEEFV 625


>gi|188025947|ref|ZP_02960307.2| hypothetical protein PROSTU_02247 [Providencia stuartii ATCC 25827]
 gi|188021023|gb|EDU59063.1| hypothetical protein PROSTU_02247 [Providencia stuartii ATCC 25827]
          Length = 653

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 85/430 (19%), Positives = 158/430 (36%), Gaps = 60/430 (13%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L + +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 241 NAYLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKA 298

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW  +G +++Y   M   +  N +  +  P +      IF   +K
Sbjct: 299 YNYQEVKGPFMMDRVLWERTGHWENYKDAMFTTSSENREYCV-KPMNCPGHVQIFNQGLK 357

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T +              
Sbjct: 358 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILSEVTDCIKMIY 416

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPI-----PS 234
            ++   G + I ++  + P   IG D       + DT E  +  ++   D  I     P 
Sbjct: 417 DVYATFGFEKIVVKLSTRPEKRIGTD------DMWDTAEADL--AQALKDQGIEFEYQPG 468

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           E   +   I                       L+D L        R  + G +      +
Sbjct: 469 EGAFYGPKIEFT--------------------LYDCLD-------RAWQCGTV---QLDF 498

Query: 295 SLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            LP  ++A++ G + +    V +    +G++     ++   + G    +P  +AP ++ +
Sbjct: 499 FLPGRLNASYVGENNERIVPVMIHRAVLGSLERFIGILTEEYAG---FFPTWLAPQQVVV 555

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI        D  +++ ++L  VG     D   E+IG +     L   P  ++ G K V
Sbjct: 556 MNIT---DTQADYVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEV 612

Query: 412 SDSKVEIKHR 421
              KV ++ R
Sbjct: 613 ESGKVSVRTR 622


>gi|73954351|ref|XP_536509.2| PREDICTED: similar to threonyl-tRNA synthetase [Canis familiaris]
          Length = 789

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 391 FFHELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRGFQEVVTPNIYNSRLWMTSGHWQHYS 450

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 451 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGL 509

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 510 TRVRRFQQDDAHIF 523


>gi|218200880|gb|EEC83307.1| hypothetical protein OsI_28676 [Oryza sativa Indica Group]
          Length = 716

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 336 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 391

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y KE + + +   +     P +      +F
Sbjct: 392 QQYRDRGYQEVLSPNIYNMQLWETSGHAANY-KENMFVFEIEKQEFGLKPMNCPGHCLMF 450

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              ++SYR LP       +  R+EL     G+ R R F   DA+ F
Sbjct: 451 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF 496


>gi|157151414|ref|YP_001450960.1| seryl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083593|sp|A8AYV0|SYS_STRGC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157076208|gb|ABV10891.1| seryl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|126729010|ref|ZP_01744825.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710940|gb|EBA09991.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 660

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 23/201 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G  E++ P +    LW  SG ++ Y  
Sbjct: 261 MQEEAPGQVFWHPNGWTIYTTLQEYMRRKQRAGGYQEINTPQVVDRKLWEASGHWEKYQH 320

Query: 92  EML-------RLADRNDKAM---------IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            M        R  + +D               P +      +F   +KSYR+LP    + 
Sbjct: 321 HMFIVEVDESRDGEHDDATAKNKEQTRINALKPMNCPCHVQVFNQGLKSYRDLPLRLAEF 380

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSI 193
               R E      G+MR R F   DA+ F    E    +    F+ +L  I+  LG  + 
Sbjct: 381 GSCARYEPSGALHGIMRVRGFTQDDAHIF--CTEDQIEAECARFIEFLADIYRELGFPTF 438

Query: 194 PMRAESGP---IGGDLSHEFI 211
            ++  + P   +G + S +++
Sbjct: 439 EIKFATRPEKRVGTEESWDYV 459


>gi|328774228|gb|EGF84265.1| hypothetical protein BATDEDRAFT_8061 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML- 94
           S G   +LP G + +  +   +R E  + G  E+  P + +  LW +SG + +Y +++  
Sbjct: 184 SLGAPFFLPHGTRIIQRLTDFLRHEYRKYGFDEIVTPLVFNKSLWEKSGHWKNYKEDITV 243

Query: 95  -RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
            +L D + +A+   P +      +F S  +SYR+LP  + +     R+E      G+ R 
Sbjct: 244 DQLNDADIQAL--KPMNCPGHCLLFSSTSRSYRDLPIRYAEFSPLHRNEASGALTGLTRV 301

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF----VSYLRIFHRLGLK-SIPMRAESGPIG 203
           R+F   D + F  TP                 Y +I H      ++  R ESG +G
Sbjct: 302 RKFHQDDGHIF-CTPSQIAQEIQSTLKFIDTMYTKILHFPQYTLALSTRPESGHVG 356


>gi|325686987|gb|EGD29011.1| serine--tRNA ligase [Streptococcus sanguinis SK72]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|125623578|ref|YP_001032061.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|166222737|sp|A2RJ76|SYS_LACLM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|124492386|emb|CAL97327.1| SerS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070342|gb|ADJ59742.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 423

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  EM  P + + +    +G+Y  + ++   L D  D+  +  PT E  +T+ +
Sbjct: 183 DEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKD--DRGFVLIPTAEVPLTNYY 240

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I     LP  F  +   FR E     R   G++R  +F   +   F   P+ S    
Sbjct: 241 RGEILDGSELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPDQSYDEL 299

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            KM  +   I  +LGL    +   +G +G
Sbjct: 300 EKMTANAENILQKLGLAYRVVALSTGDMG 328


>gi|294933724|ref|XP_002780831.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239890922|gb|EER12626.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 296

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 13/160 (8%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R ++     + GT ++      F+  +G+  + +  S+G    R +  +I    D K
Sbjct: 47  CNGRAVQGATSHFLGTHFAKMFGIEFEDRNGEKKFAEQTSWGF-TTRSIGVMIMEHGDDK 105

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR-----------DACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  ++ ++ I       +           + C+ +Y  L+  G  V  DD  
Sbjct: 106 GLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKTMIGEKCKSLYEDLNANGVRVVLDDRD 165

Query: 386 EQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           ++  G +F   +L G PL++ VG+K +    V    R TG
Sbjct: 166 DKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNTG 205


>gi|167756637|ref|ZP_02428764.1| hypothetical protein CLORAM_02174 [Clostridium ramosum DSM 1402]
 gi|237733925|ref|ZP_04564406.1| threonyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|167702812|gb|EDS17391.1| hypothetical protein CLORAM_02174 [Clostridium ramosum DSM 1402]
 gi|229383006|gb|EEO33097.1| threonyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 577

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 6/177 (3%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +++ G+  +LP G    + +     EE  + G   +  P + S +LW  SG +++Y 
Sbjct: 195 MMSEYAPGMPFFLPKGMILRNTLEQFWYEEHAKEGYEFIKTPIMMSRELWETSGHWENY- 253

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +  +  +D+     P +      ++++ + SY++LP    ++    R E      G+
Sbjct: 254 KEDMYTSMVDDREFAIKPMNCPGSLLVYKNSLHSYKDLPLRMGELGQVHRHEASGALNGL 313

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIG 203
            R R F   DA+ + +TP+  +    ++     R++  L L     +  R E   IG
Sbjct: 314 FRVRTFTQDDAHIY-MTPDQIEGEIIRLINFIDRVYGSLNLSYEIELSTRPEKKYIG 369


>gi|116512562|ref|YP_811469.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123025253|sp|Q02XG6|SYS_LACLS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116108216|gb|ABJ73356.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 423

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  EM  P + + +    +G+Y  + ++   L D  D+  +  PT E  +T+ +
Sbjct: 183 DEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKD--DRGFVLIPTAEVPLTNYY 240

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I     LP  F  +   FR E     R   G++R  +F   +   F   P+ S    
Sbjct: 241 RGEILDGSELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPDQSYDEL 299

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            KM  +   I  +LGL    +   +G +G
Sbjct: 300 EKMTANAENILQKLGLAYRVVALSTGDMG 328


>gi|312601357|gb|ADQ90612.1| Prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 290

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/143 (18%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++     + G  ++      +K  + K       S+G+ + R++ A++    D  G+I
Sbjct: 33  RALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVHSDDNGLI 91

Query: 340 WPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +P  +AP ++ ++      +Q  +   ++I   L         DD  +QIG +   +++ 
Sbjct: 92  FPPKIAPIQVDILEFFSKKNQEVKIFSKRIAKILKNAKISYKIDDTDQQIGYKINNSEVH 151

Query: 399 GFPLQVIVGSKFVSDSKVEIKHR 421
           G P+++ +G   V ++++ +  R
Sbjct: 152 GAPIRIEIGPNEVKNNQICLVRR 174


>gi|237842879|ref|XP_002370737.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968401|gb|EEB03597.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|221485712|gb|EEE23993.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
 gi|221502920|gb|EEE28630.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 711

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 9/158 (5%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +PEN     RGI+       GT ++      F+  +G    V   S+G    R +  +I 
Sbjct: 428 IPEN----GRGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGC-TTRSLGVMIM 482

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGCDVFWDDMGEQ 387
           +  D KG++ P  VA  ++ +I I   D+   +    C ++   L K    V  DD    
Sbjct: 483 THGDDKGLVIPPRVASVQVVIIPILFKDENTGEILGKCRELKTMLEKADIRVRIDDRSNY 542

Query: 388 I-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             G ++   ++ G PL++ +G K ++     +  R TG
Sbjct: 543 TPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTG 580


>gi|324994145|gb|EGC26059.1| serine--tRNA ligase [Streptococcus sanguinis SK678]
          Length = 425

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|310796673|gb|EFQ32134.1| prolyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 565

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 65  GAIEMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFR 119
           G  E S P  L S  L  E    + +  E+  +    DK     +   PT E VM   + 
Sbjct: 116 GVDETSFPMFLSSKSLEKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYS 175

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+S+R+LPF   Q     R E +     +R+REFL ++ ++  LT E +     ++  
Sbjct: 176 KWIRSHRDLPFRLNQWNSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGKEVLEILE 235

Query: 180 SYLRIFHRL 188
            Y  ++ +L
Sbjct: 236 LYAGVYEQL 244



 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 11/167 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           + RGI+       G  +S     T +  D  G+  +V   S+G+ + RV+  ++    D 
Sbjct: 276 NGRGIQGATSHCLGQNFSKMFDITVEDPDKKGEKIHVWQNSWGL-STRVIGVMVMIHGDD 334

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVC-------RDACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  +A  ++ LI +    +          D  + +   L K G     D   G  
Sbjct: 335 KGLVLPPRIAKVQVVLIAVGITAKTTPEDRKKLEDKVDDLRNELRKAGVRAESDLRDGYT 394

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +F   +L G PL++  G K  +   V    R TG +  ++L E+
Sbjct: 395 PAWKFNEWELRGVPLRLEFGPKDAAKEVVAFARRDTGEKGSVALAEL 441


>gi|114559273|ref|XP_001168878.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 6 [Pan
           troglodytes]
          Length = 684

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 20/170 (11%)

Query: 17  DAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE+  H+ + +   +   H+ S G   +LP G +  + + A IR E    G  E+  PT
Sbjct: 296 EAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPT 355

Query: 74  LQSADLWVESGRYDSYGKEMLRL----ADRNDKA------------MIYGPTHEEVMTDI 117
           L S  LW +SG ++ Y ++M  +    +DR   +            +   P +      +
Sbjct: 356 LFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLM 415

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 416 FAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 465


>gi|195952891|ref|YP_002121181.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932503|gb|ACG57203.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/427 (20%), Positives = 157/427 (36%), Gaps = 61/427 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q   G+  WLP G      V   ++E+        +  P +  + LW  SG    Y + M
Sbjct: 258 QVGPGLIIWLPKGAILRQVVEDYLKEKHRALNYQFVYTPHVGKSTLWETSGHLSYYKENM 317

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                  +++    P +      I++S I+S++ LP    ++   +R E+     G+MR 
Sbjct: 318 FPGMKIEEESYYVKPMNCPFHMAIYKSKIRSHKELPIKIAELGTVYRYEMSGVLHGLMRV 377

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F    +                     +KS+        I   L   F V
Sbjct: 378 RGFTQDDAHIFCKEED---------------------VKSV--------IKETLELAFDV 408

Query: 213 LADTG--ETQVFCSKDFMDFPIPSEN---------TDFDDIISLNSIVEQWTAPYAATSD 261
           L D G  + Q+F S    D     EN            + +     I E   A Y    D
Sbjct: 409 LKDFGFYDYQIFISTKPKDAIGTEENWKISESALKESLEALDKTYEIDEGGGAFYGPKID 468

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH--YVQMGSYGI 319
           +   K+ D++    + S     +   F    ++ L    T+ G D K H  Y+   +  +
Sbjct: 469 I---KIKDAIGRFWQCST----IQFDFNLPERFDL----TYVGEDNKKHRPYIIHRAL-L 516

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++     V+   + G   IW   ++P + ++I I        D  ++++  L       
Sbjct: 517 GSIERFTGVLIEHYAGHLPIW---LSPIQAAIIPIADRH---LDYAKEVFELLKVQNIRT 570

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + DD  E++ ++    +L   P+ ++VG K V +    ++ +    +  M + + I    
Sbjct: 571 YIDDRPERMNAKIRDNELQKIPILLVVGDKEVQEKTFSVRSKNEEFQGVMGIYDFIEKLK 630

Query: 440 HRFSNNR 446
               N R
Sbjct: 631 TAIQNKR 637


>gi|53728893|ref|ZP_00134603.2| COG0441: Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126207707|ref|YP_001052932.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|166223315|sp|A3MYU1|SYT_ACTP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126096499|gb|ABN73327.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 643

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 143/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGLVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       D +   + +    ++       I E   A Y    +      
Sbjct: 432 ----AMWDRAE-------DGLAKALTANGLSYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRV 324
            D          R  + G I      ++LP  + A++   D G+   V +    +G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLDASYVAEDNGRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+   LS  G  V  D  
Sbjct: 521 FIGIITEEYAG---FFPTWLAPTQAVVMNITDSQA---DYVQKVTKALSDAGIRVKSDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 575 NEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTR 611


>gi|297792591|ref|XP_002864180.1| hypothetical protein ARALYDRAFT_495320 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310015|gb|EFH40439.1| hypothetical protein ARALYDRAFT_495320 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 542

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R +   
Sbjct: 157 GKEL-------EEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTK-PF 208

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           +R+ EFL ++ ++   TPE ++    +M   Y R  F    +  IP R
Sbjct: 209 IRTLEFLWQEGHTAHATPEEAEKEAKQMIEIYTRFAFEHTAIPVIPGR 256


>gi|170036087|ref|XP_001845897.1| threonyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167878588|gb|EDS41971.1| threonyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 699

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   + P G    + +   IR E  + G  E+  P + +A LW  SG +  Y 
Sbjct: 312 FFHELSPGSCFFQPKGAHIYNTLMNFIRAEYRKRGFQEVISPNIYNAKLWQTSGHWQHYA 371

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      IF    +S+R LP       +  R+EL     G+
Sbjct: 372 ENMFSF-ESEKETFALKPMNCPGHCLIFDHRNRSWRELPLRMADFGVLHRNELSGALTGL 430

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 431 TRVRRFQQDDAHIF 444



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGC 377
           +G++  + A++  ++ GK   WP  ++P +I ++ +  A+D+      +K+  RL   G 
Sbjct: 571 LGSVERMIAILTENYAGK---WPFWLSPRQIMVVPVGPAYDEYA----DKVRLRLHDAGF 623

Query: 378 DVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  ++S+EE++
Sbjct: 624 MAEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTRDNKVHGEVSVEELL 682


>gi|189424928|ref|YP_001952105.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|189421187|gb|ACD95585.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 646

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 156/398 (39%), Gaps = 63/398 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   W P G      +    R+E  +     +  P +   +LW  SG YD+Y +E +   
Sbjct: 273 GFAIWHPKGAMLRTLLEDFERKEHLKRDYDIVVGPQILKTELWQRSGHYDNY-RENMYFT 331

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + ++++    P +      I++S ++SYR+LP  ++++    R E      G++R R F 
Sbjct: 332 EVDEQSFGVKPMNCLSHMMIYKSQLRSYRDLPQRYFELGTVHRHERAGVLHGLLRVRCFT 391

Query: 157 MKDAYSFDLTPEGSKHSYNKM--FVS-YLRIF---HRLGLKSIPMRAESGPIGGDLSHE- 209
             DA+    TPE        +  FVS  + IF   + + L + P ++    IG D   E 
Sbjct: 392 QDDAHIL-CTPEQLDAEIKGVLKFVSDVMGIFGFEYEMELSTRPEKS----IGSDEDWER 446

Query: 210 -----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                   L DTG           DF I   +  F                Y    D+  
Sbjct: 447 ATGALLGALKDTGR----------DFEINEGDGAF----------------YGPKIDI-- 478

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMR 323
            KL D L  ++R     I+    F    ++ L    T+  +DG K   V +    +G++ 
Sbjct: 479 -KLRDCL--DRRWQCATIQCD--FTLPERFDL----TYVASDGEKKRPVMVHRVILGSIE 529

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               V+     G   +W   +AP +  ++ +   +Q+     +++Y +L   G  V  D 
Sbjct: 530 RFIGVLIEHFAGNFPLW---LAPVQAVVLTV-TDNQI--PYAQEVYKQLRSAGIRVQEDL 583

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E++  +   A L   P  +++G K V    V  + R
Sbjct: 584 RNEKLNFKIREAQLQKIPYMLVIGDKEVEQGTVTPRFR 621


>gi|296814972|ref|XP_002847823.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238840848|gb|EEQ30510.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 739

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G    LP G K  + +  ++R E  + G  E+  P +    +W +SG +  Y  +M +
Sbjct: 319 SPGCPFLLPNGTKIFNALQKLLRTEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFK 378

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           L D   +     P +      +F    +SYR LP       +  R+E      G+ R R+
Sbjct: 379 L-DVEKRDWALKPMNCPGHCIMFGHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRK 437

Query: 155 FLMKDAYSF 163
           F   D + F
Sbjct: 438 FQQDDTHIF 446


>gi|254172667|ref|ZP_04879342.1| glycyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033596|gb|EEB74423.1| glycyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 569

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 11/145 (7%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           + K  +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   +
Sbjct: 156 DQKGYLRPETAQGMFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAE 215

Query: 160 AYSFDLTPEGSKHS-YNKMFVSYLRIF---HRL-GLKSIPMRAESGPIGGDLSHEFIVLA 214
           A  F   P+ ++H  ++++    LR++   H+L GL  I + AE     G + + F    
Sbjct: 216 AEIF-FNPKETEHPHFDEVKDEVLRLYPIEHQLKGLGEIELTAEEAVKKGYIMNTFFAY- 273

Query: 215 DTGETQVFCSKDFMDFPIPSENTDF 239
                 V   +  +D  IP E   F
Sbjct: 274 ----YMVMVKRTLLDIGIPEEKIRF 294


>gi|157115843|ref|XP_001658309.1| threonyl-tRNA synthetase [Aedes aegypti]
 gi|108883479|gb|EAT47704.1| threonyl-tRNA synthetase [Aedes aegypti]
          Length = 716

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + +   IR+E  + G  E+  P + +A LW  SG +  Y +
Sbjct: 330 FHELSPGSCFFQPKGAHIYNTLMNFIRDEYRKRGFQEVITPNIYNAKLWQTSGHWQHYAE 389

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       +      P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 390 NMFSFESEKE-TFALKPMNCPGHCLMFDHRNRSWRELPLRMADFGVLHRNELSGALTGLT 448

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 449 RVRRFQQDDAHIF 461



 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G++  + A++  S+ GK   WP  ++P ++ ++ +        D  +K+  RL + G  
Sbjct: 588 LGSVERMIAILTESYAGK---WPFWLSPRQVMVVPVGPQ---YDDYADKVRQRLHEAGFM 641

Query: 379 VFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  ++S+++++
Sbjct: 642 AEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTRDNKVHGEVSVDDLV 699


>gi|13358098|ref|NP_078372.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761869|ref|YP_001752619.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920446|ref|ZP_02690665.2| threonyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508529|ref|ZP_02958053.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701866|ref|ZP_02971526.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|13959578|sp|Q9PPV6|SYT_UREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083629|sp|B1AJH5|SYT_UREP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|11271125|pir||H82878 threonyl-tRNA synthetase UU534 [imported] - Ureaplasma urealyticum
 gi|6899538|gb|AAF30947.1|AE002152_6 threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827446|gb|ACA32708.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902899|gb|EDT49188.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675966|gb|EDT87871.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701170|gb|EDU19452.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 580

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+  WLP G    + V   I E + +     +  P L S DL+  SG +D Y   +   
Sbjct: 198 QGLPIWLPNGTIIKNQVQKFINEVEFQFNFDTVITPILGSIDLYKTSGHWDHYKDNIFSP 257

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              +++ ++  P      T ++ + ++SYR+LP    +  +  R E      G  R RE 
Sbjct: 258 VQIDNEILVLRPMTCPHHTLVYSNELRSYRSLPIRLSEHSILHRYESSGGLTGFERVREM 317

Query: 156 LMKDAYSF 163
           +++D + F
Sbjct: 318 ILEDCHVF 325


>gi|319942329|ref|ZP_08016644.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804202|gb|EFW01102.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 636

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H+KG   W  + Q         +R      G  E+  P L    LW  SG +  Y
Sbjct: 261 GMVFWHAKGWALWQVIEQ--------FMRRVYQDNGYEEVKAPQLLDRSLWERSGHWAKY 312

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
              M      N +     P +      IF S ++SYR+LP    +     R+E      G
Sbjct: 313 RDNMFTTESEN-RYYALKPMNCPGHIQIFNSKLRSYRDLPLRIGEFGQCHRNESSGSLHG 371

Query: 149 VMRSREFLMKDAYSF 163
           +MR R F   D + F
Sbjct: 372 LMRVRGFTQDDGHIF 386


>gi|313885013|ref|ZP_07818765.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619704|gb|EFR31141.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 651

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI Q +  G+  WLP G      +   I +++   G   +  P +   DL+  SG +  Y
Sbjct: 254 MISQEAGSGLPFWLPKGATIRRVIERYIMDKEIALGYEHVYTPVMAKTDLYKTSGHWAHY 313

Query: 90  GKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
             +M    D  D  M +  P +      I+++ I SYR LP    ++ +  R E      
Sbjct: 314 KDDMFPPMDMGDGEMLVLRPMNCPHHMLIYKNEIHSYRELPIRIAELGMMHRYEKSGALS 373

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           G+ R RE  + D++ F + P+  K  + ++ 
Sbjct: 374 GLQRVREMTLNDSHIF-VRPDQIKDEFKRVL 403



 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 301 TFKGADGKDHY--VQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           T+ G DG++ +  V +    +  M R VA +IE     KG  +P  +AP +  L+ +   
Sbjct: 502 TYVGEDGQNTHRPVVIHRGVVSTMERFVAYLIEEY---KGA-FPTWLAPVQAILLPVSPE 557

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E+IY  L + G  V  D   E++G +   A     P Q+++G + V D  V 
Sbjct: 558 HH--GDRVEEIYHALQEAGFRVEMDLRNEKLGYKIREAQTSKIPYQIVIGDQEVEDGTVN 615

Query: 418 IKHRLTGIREDMSLEEVI 435
           I+         +SLE+ I
Sbjct: 616 IRRYGAQDSNSVSLEDFI 633


>gi|325578419|ref|ZP_08148554.1| threonine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160155|gb|EGC72284.1| threonine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 643

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G ++I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFQNIQVKLSTRPEKRIGAD 431


>gi|168334535|ref|ZP_02692696.1| threonyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 635

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 157/399 (39%), Gaps = 48/399 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G K +  +   I + +   G +    P +   DL+  SG +  Y   M  +
Sbjct: 241 QGLPLIMPKGAKVIQTLQRWIEDLEEENGYLLTKTPNMAKNDLYKISGHWSHYKDGMFVM 300

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
              +++D+ +   P        I++    SYR+LP  + +     R+E      G++R R
Sbjct: 301 GNEEKDDEIIALRPMTCPFQFMIYKQEQHSYRDLPIRYAETATLARNESSGEMHGLIRVR 360

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-KSIPMR-AESGPIGGDLSHEFI 211
           +F + D +    TP+  +  +  +      I   LG+ K I  R ++  P   +   ++I
Sbjct: 361 QFTLADGHIV-CTPDQLETEFKNVVDLIKYIMKTLGIDKDISYRFSKWSP---EFKEKYI 416

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  ET     K+ +D        D+ +        E   A Y    DV  + +    
Sbjct: 417 DNPEAWETTETIMKNILD----HLKIDYKE-------AENEAAFYGPKLDVQFKNV---- 461

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD------HYVQMGSYGIGAMRVV 325
              K  +   +++   F    ++++    T+  ADG+       H   +G Y     R +
Sbjct: 462 -HGKEDTIITVQID--FALAERFNM----TYVDADGEKKLPYIIHRSSLGCYE----RTL 510

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A +IE         +P  +AP  + ++ I   D+    A E + A L K    V  D   
Sbjct: 511 AMLIEKYAGA----FPTWLAPTAVKILPIS--DKYADYAAE-VAATLRKNKILVEIDQRT 563

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E+IG +   A     P  V+VG+  + +  V ++ R  G
Sbjct: 564 EKIGYKIREARNERVPYIVVVGADEMENKTVSVRSRQKG 602


>gi|21911052|ref|NP_665320.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28895262|ref|NP_801612.1| seryl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|30173169|sp|Q8K635|SYS_STRP3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21905261|gb|AAM80123.1| putative seryl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28810508|dbj|BAC63445.1| putative seryl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|297297312|ref|XP_001086926.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Macaca mulatta]
          Length = 708

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 347 HDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSEN 406

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 407 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPMRFADFGVLHRNELSGTLSGLTR 465

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 466 VRRFQQDDAHIF 477


>gi|289064339|gb|ADC80545.1| proline aminoacyl-tRNA synthetase [Toxoplasma gondii]
          Length = 783

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 9/158 (5%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +PEN     RGI+       GT ++      F+  +G    V   S+G    R +  +I 
Sbjct: 549 IPEN----GRGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGC-TTRSLGVMIM 603

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGCDVFWDDMGEQ 387
           +  D KG++ P  VA  ++ +I I   D+   +    C ++   L K    V  DD    
Sbjct: 604 THGDDKGLVIPPRVASVQVVIIPILFKDENTGEILGKCRELKTMLEKADIRVRIDDRSNY 663

Query: 388 I-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             G ++   ++ G PL++ +G K ++     +  R TG
Sbjct: 664 TPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTG 701


>gi|322377063|ref|ZP_08051555.1| serine--tRNA ligase [Streptococcus sp. M334]
 gi|321281776|gb|EFX58784.1| serine--tRNA ligase [Streptococcus sp. M334]
          Length = 424

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 26/184 (14%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   L+D N    +  PT E  +T+ +
Sbjct: 183 DEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN---YVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   ++LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEEL 298

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIP 233
            KM  +   I  +L L   P R              +V   TG+     +K + ++  IP
Sbjct: 299 EKMTANAENILQKLNL---PYR--------------VVALSTGDMGFSAAKTYDLEVWIP 341

Query: 234 SENT 237
           ++NT
Sbjct: 342 AQNT 345


>gi|301156314|emb|CBW15785.1| threonyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 643

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G ++I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFQNIQVKLSTRPEKRIGAD 431


>gi|294933722|ref|XP_002780830.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239890921|gb|EER12625.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 341

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 13/160 (8%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R ++     + GT ++      F+  +G+  + +  S+G    R +  +I    D K
Sbjct: 47  CNGRAVQGATSHFLGTHFAKMFGIEFEDRNGEKKFAEQTSWGF-TTRSIGVMIMEHGDDK 105

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR-----------DACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  ++ ++ I       +           + C+ +Y  L+  G  V  DD  
Sbjct: 106 GLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKTMIGEKCKSLYEDLNANGVRVVLDDRD 165

Query: 386 EQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           ++  G +F   +L G PL++ VG+K +    V    R TG
Sbjct: 166 DKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNTG 205


>gi|313888403|ref|ZP_07822071.1| threonine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845600|gb|EFR32993.1| threonine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 636

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 156/421 (37%), Gaps = 51/421 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H+   G   + P G    +N+    R   +  G  E+  P + +  LW  SG +D Y K
Sbjct: 254 MHEEGPGFPFFHPNGMILRNNLLNWWRGVLDENGYGEILTPIILNEALWHRSGHWDHY-K 312

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           + +     +D      P +      ++ S+  SYR+LP    +  +  R EL     G+ 
Sbjct: 313 DNMYFTKIDDGDYAVKPMNCPGSILVYNSNKHSYRDLPIRLAEYGIVHRHELSGALHGLF 372

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHE 209
           R R F   DA+ + L  +  K    KM      ++   G K SI +        G+L  E
Sbjct: 373 RVRTFTQDDAHVYCLFSQ-VKDEVFKMIDLADYLYSTFGFKYSIELSTRPDDYMGEL--E 429

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              LA+    +    K+     +P             +I E   A Y    D H E    
Sbjct: 430 AWNLAEKSLKEALEEKN-----LPY------------TINEGDGAFYGPKIDFHLEDA-- 470

Query: 270 SLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMR 323
                         +G  +  GT    + LP     T+   +G +   V +    +G++ 
Sbjct: 471 --------------IGRTWQCGTIQLDFQLPENFDLTYVDENGERQRPVMLHRALLGSVE 516

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++     GK  +W   ++P ++ +I +       +D  E I  +L   G  V  D 
Sbjct: 517 RFMGILIEHFAGKFPLW---LSPVQVEVIPVSDK---FKDFAESIADKLHAAGLRVHLDG 570

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E++G +   A +      +++G K  +  K+ ++ R     +D+ ++E I        
Sbjct: 571 RAEKVGYKIREAQVKKINYMLVIGEKEETSGKLSVRKRNGEEVQDVDVDEFIASLKEEIK 630

Query: 444 N 444
           N
Sbjct: 631 N 631


>gi|307245030|ref|ZP_07527126.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307253984|ref|ZP_07535834.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258439|ref|ZP_07540179.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306854073|gb|EFM86282.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306863062|gb|EFM95006.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867501|gb|EFM99349.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 643

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 143/397 (36%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGLVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       D +   + +    ++       I E   A Y    +      
Sbjct: 432 ----AMWDRAE-------DGLAKALTANGLSYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRV 324
            D          R  + G I      ++LP  + A++   D G+   V +    +G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLDASYVAEDNGRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+   LS  G  V  D  
Sbjct: 521 FIGIITEEYAG---FFPTWLAPTQAVVMNITDSQA---DYVQKVTKALSDAGIRVKSDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 575 NEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTR 611


>gi|56807927|ref|ZP_00365750.1| COG0172: Seryl-tRNA synthetase [Streptococcus pyogenes M49 591]
 gi|209559859|ref|YP_002286331.1| seryl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238065107|sp|B5XHX4|SYS_STRPZ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|209541060|gb|ACI61636.1| Seryl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|260914069|ref|ZP_05920542.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631702|gb|EEX49880.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 644

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G ++I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFENIQVKLSTRPEKRIGAD 431


>gi|160914239|ref|ZP_02076460.1| hypothetical protein EUBDOL_00249 [Eubacterium dolichum DSM 3991]
 gi|158433866|gb|EDP12155.1| hypothetical protein EUBDOL_00249 [Eubacterium dolichum DSM 3991]
          Length = 610

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 156/399 (39%), Gaps = 53/399 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +++ G+  +LP G    + +     EE  +     +  P + S +LW  SG +D+Y 
Sbjct: 227 MMSEYAPGMPFFLPNGMILRNILENFWYEEHTKEHYQFIKTPIMMSKELWETSGHWDNY- 285

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE + ++  +D+     P +       +++ + SY++ P    ++    R E      G+
Sbjct: 286 KENMYISMVDDREFAIKPMNCPGALLAYKAGLHSYKDFPLRMGELGQVHRHEASGALNGL 345

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F + P+  +     +     RI+  LGL     +  R E   I GDL
Sbjct: 346 FRVRTFTQDDAHIF-MRPDQIESEVMSLISFIDRIYASLGLSYRIELSTRPEEKYI-GDL 403

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +   I  A        C     D+ +   +  F                Y    D H   
Sbjct: 404 A---IWEASEAALAAACKHAGKDYKVNPGDGAF----------------YGPKLDFH--- 441

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAM- 322
           + DSL        R  + G I       +LP     T+  +DG K   V +     G++ 
Sbjct: 442 IKDSL-------GREWQCGTI---QLDMNLPERFDLTYVESDGSKARPVMLHRVIFGSIE 491

Query: 323 RVVAAVIE--SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           R +  +IE  + H      +P  +AP +I ++ +  H +      EK+   L + G    
Sbjct: 492 RFIGILIEHFAGH------FPTWLAPQQIMVVPV--HYEKHLSYAEKVNEMLVQNGFRSK 543

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D   E++G +   A L   P Q+++G     +  V I+
Sbjct: 544 LDARNEKLGYRIREAQLAKIPYQIVLGDGEEENGTVTIR 582


>gi|117621181|ref|YP_856850.1| threonyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166223316|sp|A0KKP9|SYT_AERHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117562588|gb|ABK39536.1| threonyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR +       E+  P +    LW  SG ++ Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFIRGKLKEYDYQEVKGPFMMDRVLWERSGHWEKYAQ 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E      +        ++   G ++I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIMEEVSACIRMVYDVYGTFGFENIVVKLSTRPEQRIGSD 431


>gi|15675591|ref|NP_269765.1| seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71911296|ref|YP_282846.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|306826795|ref|ZP_07460097.1| serine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|30173206|sp|Q99YE2|SYS_STRP1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|13622796|gb|AAK34486.1| putative seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71854078|gb|AAZ52101.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|304431084|gb|EFM34091.1| serine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|19746699|ref|NP_607835.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|50914823|ref|YP_060795.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|30173174|sp|Q8NZN7|SYS_STRP8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461685|sp|Q5XAF1|SYS_STRP6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|19748923|gb|AAL98334.1| putative seryl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|50903897|gb|AAT87612.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|170717553|ref|YP_001784641.1| threonyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083611|sp|B0UU42|SYT_HAES2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|168825682|gb|ACA31053.1| threonyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 148/411 (36%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G   I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTDIFVKLSTRPEKRIGED-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               V+ D  E  +  +       +     +++       I E   A Y    +      
Sbjct: 432 ----VMWDRAEQGLANA-------LKHNGLEYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRV 324
            D          R  + G I      ++LP  + AT+   D       M    I G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLDATYVAEDNARRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+  + S+ G  V  D  
Sbjct: 521 FIGIITEEYAG---FFPAWLAPIQAVVMNITDSQA---DYVQKVVKQFSEAGLRVKADIR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E++G +     L   P  ++ G K + ++K+ ++ R        S+EE +
Sbjct: 575 NEKVGFKIREHTLRRVPYMLVCGDKEIVENKIAVRTRKGTDLGTFSVEEFV 625


>gi|94994938|ref|YP_603036.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|166223298|sp|Q1J594|SYS_STRPF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94548446|gb|ABF38492.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|94991059|ref|YP_599159.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|166223297|sp|Q1JFE4|SYS_STRPD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94544567|gb|ABF34615.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|182683380|ref|YP_001835127.1| seryl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|182628714|gb|ACB89662.1| seryl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 452

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 182 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 227

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 228 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 284

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 285 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 343

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 344 YRVVALSTGDMG 355


>gi|332359167|gb|EGJ36988.1| serine--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILKKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|71904134|ref|YP_280937.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|123639382|sp|Q48RS8|SYS_STRPM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71803229|gb|AAX72582.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|261855919|ref|YP_003263202.1| threonyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261836388|gb|ACX96155.1| threonyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W P G      +   +R     +G  E+  P +    LW +SG +D+Y + 
Sbjct: 256 QEEAPGLVFWHPKGWALWQVIEQHMRGIYRSSGYDEIRCPQILDVSLWKKSGHWDNYQEN 315

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F   + SYR+LP  + +     R+E      G++R
Sbjct: 316 MF-FTESEKRTFAVKPMNCPGHVQVFNHGLHSYRDLPIRYGEFGSCHRNEPSGALHGILR 374

Query: 152 SREFLMKDAYSF 163
            R F   D + F
Sbjct: 375 VRGFTQDDGHIF 386


>gi|15673694|ref|NP_267868.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281492294|ref|YP_003354274.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|30173210|sp|Q9CEX2|SYS_LACLA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|12724729|gb|AAK05810.1|AE006401_11 seryl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375958|gb|ADA65449.1| Seryl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|326407178|gb|ADZ64249.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 423

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  EM  P + + +    +G+Y  + ++   L D  D+  +  PT E  +T+ +
Sbjct: 183 DEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKD--DRGFVLIPTAEVPLTNYY 240

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I     LP  F  +   FR E     R   G++R  +F   +   F   P+ S    
Sbjct: 241 RGEILDGAELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPDQSYDEL 299

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            KM  +   I  +LGL    +   +G +G
Sbjct: 300 EKMTANAENILQKLGLAYRVVALSTGDMG 328


>gi|94989115|ref|YP_597216.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94993007|ref|YP_601106.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|166223295|sp|Q1JA99|SYS_STRPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166223296|sp|Q1JKF1|SYS_STRPC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94542623|gb|ABF32672.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546515|gb|ABF36562.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|307945488|ref|ZP_07660824.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307771361|gb|EFO30586.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 18/213 (8%)

Query: 5   KYFLPILQENPRDAEIASH-KLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H KL     + H  +   G+  W   G     N+ + +R   
Sbjct: 237 KAYLHMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHDKGWTLFQNLVSYMRRRL 292

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTD 116
           +     E++ P + S  LW  SG +  Y + M  +      D +       P +      
Sbjct: 293 S-GDYQEVNAPQVLSTKLWETSGHWAWYKENMFAVQGADPEDEDTHVFALKPMNCPGHIQ 351

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       
Sbjct: 352 IFKHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTDEQMAEECL 410

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           K+    L ++   G + I ++  + P   +G D
Sbjct: 411 KINDLILSVYEHFGFEKIVVKLSTRPEKRVGSD 443


>gi|297202644|ref|ZP_06920041.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197713219|gb|EDY57253.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 471

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++  +  PT E ++ D F   ++SYR+LP    Q     R ELRPR   
Sbjct: 99  GKEL-------EEPAVVRPTSEMIINDYFSKWVQSYRDLPLLINQWANVVRWELRPRL-F 150

Query: 150 MRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIPMR 196
           +R+ EFL ++ ++   T E ++    H + +++  ++   + L +  +P R
Sbjct: 151 LRTTEFLWQEGHTAHATQEDARAFASHIHRQVYEDFM--TNVLAMDVVPGR 199


>gi|145298933|ref|YP_001141774.1| threonyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166223317|sp|A4SMA4|SYT_AERS4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|142851705|gb|ABO90026.1| threonyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   IR +       E+  P +    LW  SG ++ Y +
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFIRGKLKEYDYQEVKGPFMMDRVLWERSGHWEKYAQ 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 AMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E      +        ++   G ++I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIMEEVSACIRMVYDVYGTFGFENIVVKLSTRPEQRIGSD 431


>gi|110598676|ref|ZP_01386941.1| threonyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110339729|gb|EAT58239.1| threonyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 657

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G    + + + ++EEQ + G + +  P + + +L+  SG Y  Y       L
Sbjct: 273 GLPIWLPKGAIIRNELESFLKEEQRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPL 332

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D   +   Y   P +      I+ S ++SYR+LP    +    +R E      G++R
Sbjct: 333 TYHDEEGRKEQYLLKPMNCPHHHLIYSSKMRSYRDLPIRLTEFGTVYRHEQSGELNGLVR 392

Query: 152 SREFLMKDAYSF 163
           +R F   D++ +
Sbjct: 393 ARGFTQDDSHIY 404


>gi|332797162|ref|YP_004458662.1| threonyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694897|gb|AEE94364.1| threonyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 542

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 165/412 (40%), Gaps = 42/412 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P GQ   + +   ++E     G  E+    +    LW  SG Y+ Y  +ML + 
Sbjct: 155 GLVLYHPKGQIIRNELIDYMKEINASMGYQEVYTTHVYRTILWKISGHYEMYKDKML-IF 213

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFL 156
             +D+ +   P +      I++S  +SY++LP  F +    +R E +   +G++R R F 
Sbjct: 214 THDDEELGIKPMNCPAHILIYKSRTRSYKDLPIRFSEFGNVYRWEQKGELYGLLRVRGFT 273

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D + F    E    +  KM +S          K++ + A+ G  G D+    I L+  
Sbjct: 274 QDDGHVF--LREDQLENEVKMLIS----------KTLEVLAKFGFKGDDVR---INLSTR 318

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +  +   + +      + N   + + SLN    + E+  A Y    D     + DSL  
Sbjct: 319 PDESIGTDEQWE----KATNALVNALRSLNLKYQVKEKEGAFYGPKIDFD---IRDSLGR 371

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESS 332
             ++S   ++    F    ++ L     +   DG      M    I G++    A++   
Sbjct: 372 WWQLSTIQVD----FNLPERFKL----EYVDKDGSKKRPVMVHRAIYGSIDRFLAILLEH 423

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             GK   W   ++P ++ ++ I       R+  EK+ ++L  V      D   E +  + 
Sbjct: 424 FKGKLPTW---LSPIQVRILPINPE---VREYAEKVLSKLVSVKIRAEIDSEEETLSKRI 477

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             A   G P  +I+G K    + V I+ R     + + L++ ++  S    N
Sbjct: 478 KKAYDDGVPYILIIGKKEAESNSVTIRARGNIEVKGVPLDKCVDAISKEIQN 529


>gi|156552955|ref|XP_001603180.1| PREDICTED: similar to threonyl-tRNA synthetase [Nasonia
           vitripennis]
          Length = 859

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + +   IR E  + G  E+  P + ++ LW  SG +  Y +
Sbjct: 472 FHELSPGSCFFQPRGAHIYNTLVEFIRGEYKKRGFQEVVTPNIYNSKLWQTSGHWQHYSE 531

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    D   +     P +      IF    +S+R LP       +  R+EL     G+ 
Sbjct: 532 NMFSF-DVEKETFALKPMNCPGHCMIFDVRNRSWRELPLRMADFGVLHRNELSGALTGLT 590

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 591 RVRRFQQDDAHIF 603


>gi|289617913|emb|CBI55490.1| unnamed protein product [Sordaria macrospora]
          Length = 497

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 16/206 (7%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P   E P   ++ + + +  T +   +S G   +LP G +  + +   +R++    G  
Sbjct: 46  VPAKPEAPDHRDLGTQQELFMTSI---YSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQ 102

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRL-------ADRNDKAMI--YG--PTHEEVMTD 116
           E+  PT+    LW +SG  ++Y  +M  +       AD  +   +  YG  P +      
Sbjct: 103 EVITPTIYKKALWAKSGHLENYADDMFTVTSTSPSRADVTEAGEVDEYGLKPMNCPGHCL 162

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF +  +SYR+LP  +       R+E+     G+ R R F   D + F   P   +   +
Sbjct: 163 IFAAQKRSYRDLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIF-CRPNQIEDEIS 221

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP 201
           K      R++    L S  ++  + P
Sbjct: 222 KTLEFIRRVYKDFRLGSYRLKLSTRP 247


>gi|309776920|ref|ZP_07671890.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915331|gb|EFP61101.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 580

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 85/415 (20%), Positives = 161/415 (38%), Gaps = 53/415 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ +++ G+  +LP G    + +     EE  +     +  P + S +LW  SG +++Y 
Sbjct: 196 MMSEYAPGMPFFLPNGMIIRNLLENFWYEEHTKENYQFIKTPIMMSKELWEVSGHWENY- 254

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE +     +D+     P +      +F++ + SY++LP    ++    R E      G+
Sbjct: 255 KENMYTTMVDDREFAIKPMNCPGSLLVFKNGLHSYKDLPLRMGELGQVHRHEASGALNGL 314

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDL 206
            R R F   DA+ F + P+  +    ++     R++   GL     +  R E   I GDL
Sbjct: 315 FRVRTFTQDDAHIF-MRPDQIEGEVMRLIQFIDRVYSVFGLSYRIELSTRPEKKYI-GDL 372

Query: 207 S---HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           +        LAD       C     ++ +   +  F                Y    D H
Sbjct: 373 AIWEQSEKALADA------CVHAGKEYKVNPGDGAF----------------YGPKLDFH 410

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIG 320
              + DSL        R  + G I       +LP     T+   DG K   V +     G
Sbjct: 411 ---IKDSL-------GREWQCGTI---QLDMNLPERFDLTYVEKDGSKVRPVMLHRVIFG 457

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++     ++     G   +W   +AP ++S++ +  H +   +   ++  +L  +G    
Sbjct: 458 SIERFIGILIEHFAGHFPVW---LAPQQVSVVPV--HHEKHLEYANEVNEKLLALGYRSK 512

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   E++G +   A L   P Q+++G   + +  V ++   +     M LE+ I
Sbjct: 513 LDARNEKLGYRIREAQLSKIPYQLVIGDGEIENGSVTLRRAQSKKSLTMPLEDFI 567


>gi|153812461|ref|ZP_01965129.1| hypothetical protein RUMOBE_02860 [Ruminococcus obeum ATCC 29174]
 gi|149831386|gb|EDM86474.1| hypothetical protein RUMOBE_02860 [Ruminococcus obeum ATCC 29174]
          Length = 657

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   +P G   +  +   I +E+ + G +    P +  +DL+  SG +D Y   M  L
Sbjct: 259 QGLPLIMPNGVIMMQELQRWIEDEETKRGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVL 318

Query: 97  ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            D      ++   P        ++++   SYR+LP  + +    FR+E      G+ R R
Sbjct: 319 GDEETDKEVFALRPMTCPFQYYVYKAEQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVR 378

Query: 154 EFLMKDAY 161
           +F + + +
Sbjct: 379 QFTISEGH 386


>gi|171778068|ref|ZP_02919325.1| hypothetical protein STRINF_00160 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283050|gb|EDT48474.1| hypothetical protein STRINF_00160 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LA+ +D  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAN-SDYVLI--PTAEVPLTNYYRGEILDGKELPVYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +LGL 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS-KPETSYDELEKMVANAENILQKLGL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|15457932|gb|AAK99176.1| Seryl-tRNA synthetase [Streptococcus pneumoniae R6]
          Length = 445

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 175 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 220

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 221 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 277

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 278 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 336

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 337 YRVVALSTGDMG 348


>gi|154249412|ref|YP_001410237.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154153348|gb|ABS60580.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 638

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G+  +LP G   L  + ++ RE   + G  E+  P +    LW +SG +D Y   M  
Sbjct: 261 AAGMPIFLPYGMTVLKELMSLSRELHKKYGYKEVGTPLIMHEKLWRQSGHWDHYKNNMY- 319

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             ++ +      P +      I+++   SY++LP   ++     R E      G++R R 
Sbjct: 320 FTEKEEVTYAVKPMNCPGHILIYKNKPVSYKDLPIRLFEFGRVHRYERGGVLHGLLRVRT 379

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 380 FTQDDAHIF 388


>gi|326492063|dbj|BAJ98256.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326499331|dbj|BAK06156.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 667

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 82/407 (20%), Positives = 153/407 (37%), Gaps = 50/407 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++   + G   +  P +  ADLW  SG  D Y + M    
Sbjct: 291 GLVFWHPKGAIIRHILEDSWKQTHLQRGYDLLYTPHVAKADLWKISGHIDFYKENMYNQM 350

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  D+     P +      +++  ++SYR+LP    ++   +R EL     G+ R R F 
Sbjct: 351 DVEDEPYQLRPMNCPYHILVYKRKLQSYRDLPIRVAELGTVYRYELSGALHGLFRVRGFT 410

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F L  +  K     +      I  + G ++  +   + P   +G D        
Sbjct: 411 QDDAHIFCLEDQ-IKDEIRGVLDLTEEILGQFGFRNYEVNLSTRPEKSVGSD-------- 461

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  E      KD +           DD     +I E   A Y    D+   K+ D+L  
Sbjct: 462 -DIWEKATIALKDAL-----------DDKGWGYTIDEGGGAFYGPKIDL---KIEDALGR 506

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG---KDHYVQMGSYGIGAMRVVAAVIE 330
             + S   ++          ++LP        D    K   + +    +G++     ++ 
Sbjct: 507 KWQCSTVQVD----------FNLPERFDITYVDSHTEKKRPIMIHRAILGSLERFFGILI 556

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++ G   +W   +AP +  ++ +  ++ Q C +   ++ +R   +  +V     GE++ 
Sbjct: 557 ENYAGDFPLW---LAPTQARILPVTNNELQYCNEVASELKSR--GIRAEVC---HGERLP 608

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                A+    PL  +VG K V    + I+ R  G    M ++  I+
Sbjct: 609 KLIRNAETQKVPLMAVVGPKEVEARTLTIRSRHNGEMGTMPVDNFIS 655


>gi|307719284|ref|YP_003874816.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306533009|gb|ADN02543.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 578

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/422 (18%), Positives = 154/422 (36%), Gaps = 48/422 (11%)

Query: 32  IHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +H+ +  G+  W P G +    +    RE+    G   +  P +  A LW  SG    Y 
Sbjct: 193 VHEEAGPGLIYWHPKGARIRLEIENFWREQHLARGYEVLYTPHIGKAWLWETSGHLSFYK 252

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    + +       P +      I+++ ++SYR LP  + ++   +R E      G+
Sbjct: 253 ENMYAPMEVDKSDYYIKPMNCPFHIMIYKTRLRSYRELPLRWAELGTVYRYERSGVLHGL 312

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R R F   DA+ F  TPE  +    +     L ++   G   +     + P       E
Sbjct: 313 LRVRGFTQDDAHIF-CTPEQIEDEILETLRFSLFMWETFGFSDVKAYLSTRPEKSVGEPE 371

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF----DDIISLNSIVEQWTAPYAATSDVHNE 265
               A TG  +    ++ +D+ +      F     DI   +++  +W      TS +   
Sbjct: 372 RWEQA-TGSLRKAIEREGLDYEVDEGGGAFYGPKIDIKVRDALGREWQ-----TSTIQ-- 423

Query: 266 KLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMR 323
             FD +LPE                           T+  ADG++    M     +G++ 
Sbjct: 424 --FDFNLPER-----------------------FDITYVDADGREKRPYMVHRALLGSLE 458

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++   + G   +W   +AP ++ +I +     V     +++   L + G     D 
Sbjct: 459 RFFGILIEHYGGAFPVW---LAPVQVVVIPV---SDVFAGYAQEVVRALREAGVRAEADL 512

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +++ ++   A     P  VIVG +      V ++ R    R  ++L   +   + R  
Sbjct: 513 SADRMNAKIRKAQQEKIPYAVIVGQREQEGRTVSVRVRGGEQRNGVALGAFVEDVARRMR 572

Query: 444 NN 445
             
Sbjct: 573 ER 574


>gi|240280652|gb|EER44156.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325089093|gb|EGC42403.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 733

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K  + + A++R E  + 
Sbjct: 293 MQEHLKFLEEAEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQALLRSEYRKR 352

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 353 GYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGHRERS 411

Query: 125 YRNLPFTFYQIQLKFRDE 142
           YR LP       +  R+E
Sbjct: 412 YRELPLRIADFGVLHRNE 429


>gi|70998636|ref|XP_754040.1| glycyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66851676|gb|EAL92002.1| glycyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159126226|gb|EDP51342.1| glycyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 699

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++IE  +      + +G++ +P ++AP K+ ++ +  H    R   +++
Sbjct: 547 SFGIG--RILYSMIEHVYWAREEDEARGVLSFPPAIAPTKVLIVPLSTHASF-RPLLQQL 603

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 604 MTKLRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDTTKQVR 663

Query: 429 MSLEEVIN 436
            S +E++ 
Sbjct: 664 ASEDEILQ 671



 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +++PF    I   FR+E+ PR G++R REFLM +   + + PEG K  +
Sbjct: 281 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEGGKKHH 328


>gi|315186787|gb|EFU20545.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Spirochaeta
           thermophila DSM 6578]
          Length = 578

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/416 (19%), Positives = 158/416 (37%), Gaps = 44/416 (10%)

Query: 32  IHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +H+ +  G+  W P G +    +    RE+    G   +  P +  A LW  SG    Y 
Sbjct: 193 VHEEAGPGLIYWHPKGARIRLEIENFWREQHLARGYEVLYTPHIGKAWLWETSGHLSFYK 252

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    + +       P +      I+++ ++SYR LP  + ++   +R E      G+
Sbjct: 253 ENMYAPMEVDKSDYYIKPMNCPFHIMIYKTRLRSYRELPLRWAELGTVYRYERSGVLHGL 312

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R R F   DA+ F  TPE  +    +     L ++   G   +     + P   D S  
Sbjct: 313 LRVRGFTQDDAHIF-CTPEQIEDEILETLRFSLFMWKTFGFSDVKAYLSTRP---DKS-- 366

Query: 210 FIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                  GE + +  + + +   I  E  D++       + E   A Y    D+   K+ 
Sbjct: 367 ------VGEPERWEQATESLRKAIEREGLDYE-------VDEGGGAFYGPKIDI---KVR 410

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVV 325
           D+L    + S               ++LP     T+  ADG++    M     +G++   
Sbjct: 411 DALGREWQTST----------IQFDFNLPERFDITYVDADGREKRPYMVHRALLGSLERF 460

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   + G   +W   +AP ++ +I +     V     +++   L + G     D   
Sbjct: 461 FGILVEHYGGAFPVW---LAPVQVVVIPV---SDVFAGYAQEVVRALREAGVRAEADLSA 514

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +++ ++   A     P  VIVG +      V ++ R    R  ++L + +   + R
Sbjct: 515 DRMNAKIRKAQQEKIPYAVIVGQREQEGRTVSVRVRGGEQRNGVALGDFVEDVARR 570


>gi|330935397|ref|XP_003304947.1| hypothetical protein PTT_17681 [Pyrenophora teres f. teres 0-1]
 gi|311318137|gb|EFQ86884.1| hypothetical protein PTT_17681 [Pyrenophora teres f. teres 0-1]
          Length = 562

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 123/332 (37%), Gaps = 67/332 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E  M   F   I+S+R+LP    Q     R E +     +RSREFL ++ 
Sbjct: 147 EKPIAVRPTSETAMYPYFARKIQSHRDLPLKLNQWNNVVRWEFKHPMPFIRSREFLWQEG 206

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT E +     ++   Y  ++    L ++P+      + G              T+
Sbjct: 207 HTAHLTREEASAEVLQILDWYSDVYQN--LLAVPV------VKG--------------TK 244

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV---HNEKLFDSLPENKRV 277
               K    FP     T  +  I       Q     AATS     H  K+F+   E+   
Sbjct: 245 TVNEK----FPGADYTTTIEGFIPATGRGIQ-----AATSHCLGQHFSKMFNITVEDPTA 295

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
              G +  H+  +   + L   +                  IG M      I +  D +G
Sbjct: 296 KEAG-KSEHVHVWQNSWGLTTRS------------------IGVM------ILTHGDNRG 330

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM--------GEQIG 389
           ++ P  VA  ++ +I +    ++  +A E++Y ++ K+  D+    +        G   G
Sbjct: 331 LVIPPRVAEIQVVVIPVGVTAKMSAEAKEELYGKVKKIADDLTEAGVRVETDYREGYSPG 390

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +F   +L G PL++  G K      V    R
Sbjct: 391 WKFNDWELKGIPLRIEFGPKDAEKGVVTTSRR 422


>gi|306828941|ref|ZP_07462133.1| serine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304429119|gb|EFM32207.1| serine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELKDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|259482954|tpe|CBF77921.1| TPA: glycyl-tRNA synthetase (AFU_orthologue; AFUA_5G05920)
           [Aspergillus nidulans FGSC A4]
          Length = 689

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +++E  +      + +G++ +P  +AP K+ L+ + + +   R   +++
Sbjct: 537 SFGIG--RILYSLMEHVYYYREGDEARGVLSFPPVIAPTKVLLVPL-SSNPAFRPMVQEL 593

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  V V  + V D+ + ++ R +  +  
Sbjct: 594 TTKLRRLGVSSRVDDSSASIGKRYARNDELGTPFGVTVDFQSVKDNTITLRDRDSTKQVR 653

Query: 429 MSLEEVIN 436
            S EE++ 
Sbjct: 654 ASQEEILQ 661



 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 286 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPEGGK 328


>gi|307200699|gb|EFN80796.1| Threonyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 691

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 154/417 (36%), Gaps = 62/417 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   IR E  + G  E+  P + ++ LW  SG +  Y + 
Sbjct: 305 HELSPGSCFFQPRGAYIYNTLIDFIRSEYRKRGFQEVISPNIYNSKLWQVSGHWQHYAEN 364

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D   +     P +      IF    +S+R LP       +  R+E+     G+ R
Sbjct: 365 MFSF-DVEKETYALKPMNCPGHCMIFDVRSRSWRELPLRLADFGVLHRNEMSGALTGLTR 423

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F      S    NK  +S L                       L H + 
Sbjct: 424 VRRFQQDDAHIF-----CSVDQINKEILSALDF---------------------LRHVYS 457

Query: 212 VLADTGETQVFC-----SKDFMDFPIPSE-NTDFDDIISLNSIVEQWT------APYAAT 259
           V    G T   C      K   D  I ++     +D  SLN+  E WT      A Y   
Sbjct: 458 VF---GFTFDLCLSTRPEKFLGDIAIWNQAEKALED--SLNTFDEPWTLNPQDGAFYGPK 512

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            D+    + D+L    + +   ++      F   Y          +  K   V +    +
Sbjct: 513 IDI---TIRDALKRAHQCATIQLDFQLPIRFNLSY-------VNESGEKVRPVIIHRAIL 562

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCD 378
           G++  + A++  S+ GK   WP  ++P +  ++ + +  D+      +K++     V  D
Sbjct: 563 GSVERMIAILTESYAGK---WPFWLSPRQAMVVPVASQLDEYAYQVKQKLWDAGIMVEID 619

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           V   D  +    +   A L  F   ++VG K  +   V I+ R   +  +M +E++I
Sbjct: 620 V---DPNDSFNKKIRNAQLAQFNFILVVGEKERNAGTVNIRTRDNVVHGEMGVEDLI 673


>gi|293364834|ref|ZP_06611551.1| serine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703083|ref|ZP_07640030.1| seryl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316284|gb|EFE56720.1| serine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623476|gb|EFO02466.1| seryl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELKDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|255548247|ref|XP_002515180.1| prolyl-tRNA synthetase, putative [Ricinus communis]
 gi|223545660|gb|EEF47164.1| prolyl-tRNA synthetase, putative [Ricinus communis]
          Length = 501

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++      F+   G+   V   S+   + R +  ++    D KG
Sbjct: 236 TGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMVWQNSWAY-STRTIGVMVMVHGDDKG 294

Query: 338 IIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDV---FWDDMGEQIGSQ 391
           ++ P  VA  ++ +I +   D   Q   DAC +    L KVG      F D+     G +
Sbjct: 295 LVLPPKVASVQVIVIPVPYKDADTQGIFDACTETVDALCKVGIRAESDFRDNYSP--GWK 352

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           ++  ++ G PL++ +G K +++++V    R    ++D+S
Sbjct: 353 YSHWEVKGVPLRIEIGPKDLANNQVRTVRRDNATKKDIS 391


>gi|114600744|ref|XP_001153847.1| PREDICTED: threonyl-tRNA synthetase isoform 7 [Pan troglodytes]
          Length = 715

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/416 (20%), Positives = 156/416 (37%), Gaps = 63/416 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLS 207
            R R F   DA+ F    +       K  + +LR  + +   S  +   + P    GD  
Sbjct: 453 TRVRRFQQDDAHIFCAMEQIEDEI--KGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGD-- 508

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
              I + D  E Q+             EN       SLN   E+W       A Y    D
Sbjct: 509 ---IEVWDQAEKQL-------------EN-------SLNEFGEKWELNSGDGAFYGPKID 545

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +   ++ D++    + +   ++      F   Y  P+           H   +GS     
Sbjct: 546 I---QIKDAIGRYHQCATIQLDFQLPIRFNLTYKRPVIV---------HRAILGS----- 588

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCDV 379
           +  + A++  ++ GK   WP  ++P ++ ++ +      C +  +K+  +   +K   D+
Sbjct: 589 VERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVRQQFHDAKFMADI 642

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D  G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E I
Sbjct: 643 DLDP-GCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETI 697


>gi|168000563|ref|XP_001752985.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695684|gb|EDQ82026.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 544

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RG++       G  +S      F+  + +   V   S+G+   R +  ++    D KG
Sbjct: 280 TGRGVQGATSHCLGQNFSKMFDILFEDENRERKNVWQNSWGL-TTRTIGVMVMIHGDNKG 338

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVA 395
           ++ P  VAP ++ +I +        + C K+  +L + G  V  DD+ +    G +++  
Sbjct: 339 LVLPPRVAPIQVVVIPVPFKGIDPSEECLKVTRQLQEAGFRVK-DDLRDNYSPGWKYSHW 397

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +L G PL++ +G + + + +V +  R
Sbjct: 398 ELKGVPLRIEIGPRDIENKQVRVVRR 423



 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM  IF   I+ +R+LP    Q     R E +     +RSREFL ++ ++   T 
Sbjct: 168 PTSETVMYPIFAKWIRGHRDLPLRINQWCNVVRWEFKHPTPFIRSREFLWQEGHTAFATK 227

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +    +++   Y R++  L
Sbjct: 228 EEADVEVHQILELYRRVYEEL 248


>gi|331266974|ref|YP_004326604.1| seryl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683646|emb|CBZ01264.1| seryl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELKDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|291404015|ref|XP_002718268.1| PREDICTED: threonyl-tRNA synthetase-like 2-like [Oryctolagus
           cuniculus]
          Length = 709

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  S G   +LP G      +  +IREE ++   +E+  P + ++ LW  SG +  Y +
Sbjct: 321 FHDVSPGSCFFLPRGAFVYSTLMDLIREEYHKRDFLEVLSPNVYNSKLWETSGHWQHYSE 380

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       +      P +      +F    +S+R +P  F    +  R+EL     G+ 
Sbjct: 381 NMFTFRVEKE-TFALKPMNCPGHCLMFAHRPRSWREMPVRFADFGVLHRNELSGTLSGLT 439

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 440 RVRRFQQDDAHIF 452


>gi|76798465|ref|ZP_00780702.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76799387|ref|ZP_00781541.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76585255|gb|EAO61859.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76586166|gb|EAO62687.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
          Length = 381

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IYS++      LD        E  + G  E+  P + 
Sbjct: 110 RGAKVTGSRFLFYKGLGARLERAIYSFM------LD--------EHAKEGYTEVIPPYMV 155

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD      +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 156 NHDSMFGTGQYPKFKEDTFELAD---SPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAM 212

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 213 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 270

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 271 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 301


>gi|258573385|ref|XP_002540874.1| prolyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237901140|gb|EEP75541.1| prolyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 586

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 5/143 (3%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMI 105
           + + A   ++  + G    S P   S D L  E    + +  E+  +     ++ +K + 
Sbjct: 90  EEIQAWFNDKIKKMGVKNCSFPLFVSEDVLKKEKDHIEGFAAEVAWVTHAGNNQLEKKIA 149

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  L
Sbjct: 150 IRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHL 209

Query: 166 TPEGSKHSYNKMFVSYLRIFHRL 188
           T   ++    ++   Y  ++ +L
Sbjct: 210 TEAAAREEVLQILQHYAHVYEQL 232


>gi|159036441|ref|YP_001535694.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157915276|gb|ABV96703.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 405

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 12/133 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G  A   V   IRE + + G   +  P L   +L+  SG  D +  +M   +
Sbjct: 23  GLPLWLPAGAAARHAVEEYIRELERQAGHQHVLTPPLGKRELFELSGHLDFFADDMFPPM 82

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM---- 150
           RL+   D   +  P        ++RS  +S R+LP    ++   +R E   R GV+    
Sbjct: 83  RLS--ADDEFVLRPALCPHHALVYRSRGRSRRDLPLRIAELGGMYRAE---RSGVLGGLA 137

Query: 151 RSREFLMKDAYSF 163
           R R   + DA++F
Sbjct: 138 RVRAISLNDAHNF 150


>gi|323699396|ref|ZP_08111308.1| histidyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323459328|gb|EGB15193.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 14/171 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS--YGK 91
           Q  KG     P        + A  RE  +R G  E+  P L+  +L+ +S   D+   GK
Sbjct: 5   QKIKGFADLFPEEAAKYTFMEACAREIFSRYGFGELRTPILEKTELFQKSIGEDTDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT---FYQIQLKFRDELRPRFG 148
           EM    DR D+++   P   E    + R+ I+S    P     F+     FR E RP+ G
Sbjct: 65  EMFTFPDRKDRSLTMRP---EATAGVVRAFIESKTYQPGNISKFFTFGPMFRYE-RPQKG 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             R R+F   +A  F      +      M  ++LR   R+GL+ + +   S
Sbjct: 121 --RQRQFHQINAECFGADEPQADAELILMLTAFLR---RIGLRDLTVELNS 166


>gi|154278048|ref|XP_001539849.1| threonyl-tRNA synthetase [Ajellomyces capsulatus NAm1]
 gi|150413434|gb|EDN08817.1| threonyl-tRNA synthetase [Ajellomyces capsulatus NAm1]
          Length = 733

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +QE+ +  E A  +  LR G         + S G    LP G K  + + A++R E  + 
Sbjct: 293 MQEHLKFLEEAEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQALLRSEYRKR 352

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F    +S
Sbjct: 353 GYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGHRERS 411

Query: 125 YRNLPFTFYQIQLKFRDE 142
           YR LP       +  R+E
Sbjct: 412 YRELPLRIADFGVLHRNE 429


>gi|220917084|ref|YP_002492388.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254783505|sp|B8J823|SYT_ANAD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219954938|gb|ACL65322.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 650

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 18/145 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ + G   WLP G    + +   +R    + G  E+  P L +  LW  SG +  Y + 
Sbjct: 262 HEFAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGYQEVKTPLLFNKRLWETSGHWGKYREN 321

Query: 93  MLRLAD-RNDKAM------------IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           M  + D  +D A+            +  P+H      I+R   +SYR LP  ++      
Sbjct: 322 MFLVVDSESDPALPLEDRCSFSLKPMNCPSHHL----IYRMDKRSYRELPVRYFTTDALH 377

Query: 140 RDELRPRF-GVMRSREFLMKDAYSF 163
           R+E      G+ R R+F   DA+ +
Sbjct: 378 RNEASGSLGGLTRVRQFEQDDAHIY 402


>gi|197122302|ref|YP_002134253.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|238689843|sp|B4UAM8|SYT_ANASK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|196172151|gb|ACG73124.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 650

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 18/145 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ + G   WLP G    + +   +R    + G  E+  P L +  LW  SG +  Y + 
Sbjct: 262 HEFAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGYQEVKTPLLFNKRLWETSGHWGKYREN 321

Query: 93  MLRLAD-RNDKAM------------IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           M  + D  +D A+            +  P+H      I+R   +SYR LP  ++      
Sbjct: 322 MFLVVDSESDPALPLEDRCSFSLKPMNCPSHHL----IYRMDKRSYRELPVRYFTTDALH 377

Query: 140 RDELRPRF-GVMRSREFLMKDAYSF 163
           R+E      G+ R R+F   DA+ +
Sbjct: 378 RNEASGSLGGLTRVRQFEQDDAHIY 402


>gi|168485545|ref|ZP_02710053.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183571170|gb|EDT91698.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|225574947|ref|ZP_03783557.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037794|gb|EEG48040.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
          Length = 667

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P G   L  +   I + E N  G I    P +  +DL+  SG +D Y   M  
Sbjct: 275 QGLPLLMPKGVIILKELQRWIEDLEDNEWGYIRTKTPLMAKSDLYKISGHWDHYKDGMFV 334

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      +Y   P        ++++   SYR LP  + +    FR+E      G+ R 
Sbjct: 335 LGDEEKDKEVYALRPMTCPFQYYVYKASQHSYRELPLRYSETSTLFRNEDSGEMHGLTRV 394

Query: 153 REFLMKDAY 161
           R+F + +A+
Sbjct: 395 RQFTITEAH 403


>gi|149003505|ref|ZP_01828379.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168494543|ref|ZP_02718686.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|237650372|ref|ZP_04524624.1| seryl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822060|ref|ZP_04597905.1| seryl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758441|gb|EDK65440.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|183575522|gb|EDT96050.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|114600756|ref|XP_001153674.1| PREDICTED: threonyl-tRNA synthetase isoform 5 [Pan troglodytes]
          Length = 641

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 453 TRVRRFQQDDAHIF 466


>gi|322391441|ref|ZP_08064910.1| serine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321145524|gb|EFX40916.1| serine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGAKLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYDELEKMVGNAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|14601532|ref|NP_148072.1| glycyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|11387160|sp|Q9YBF8|SYG_AERPE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|5105327|dbj|BAA80640.1| glycyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 583

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + +P  +AP +  ++ +  +D+   +    +Y  L + G  V++DD G  IG ++A AD 
Sbjct: 465 LAFPRDIAPVQAVVLPLVENDEKLVERARMVYETLVEAGFTVYYDDSG-SIGRRYARADE 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G P  V +  + + D  V ++ R T  +  +  +EV++
Sbjct: 524 IGVPAAVTIDYQTLEDGTVTLRDRDTWRQVRIGADEVVD 562


>gi|319939766|ref|ZP_08014123.1| seryl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811104|gb|EFW07415.1| seryl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 425

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHQKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   ++D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFEVSDTN---YVLIPTAEVPLTNYYRGEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEHSYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|149012162|ref|ZP_01833271.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|303255391|ref|ZP_07341457.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303259488|ref|ZP_07345465.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262351|ref|ZP_07348294.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303264769|ref|ZP_07350686.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303266608|ref|ZP_07352493.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303268841|ref|ZP_07354628.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|147763764|gb|EDK70698.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|301801323|emb|CBW34006.1| seryl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302597636|gb|EFL64716.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636450|gb|EFL66942.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639422|gb|EFL69880.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302641622|gb|EFL71982.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302643852|gb|EFL74114.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302645636|gb|EFL75866.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|56789234|gb|AAH88355.1| TARS protein [Homo sapiens]
          Length = 682

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 334 FFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 393

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 394 ENMFSF-EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 452

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 453 TRVRRFQQDDAHIF 466


>gi|254692867|ref|NP_001157089.1| threonyl-tRNA synthetase, mitochondrial isoform 2 [Mus musculus]
 gi|14290460|gb|AAH08995.1| Tars2 protein [Mus musculus]
          Length = 697

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G +  + + A IR E  R G  E+  PTL S  LW +SG ++ Y 
Sbjct: 318 FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYR 377

Query: 91  KEMLRL----------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            +M  L                A      +   P +      +F    +S+R LP     
Sbjct: 378 ADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVRLAD 437

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
                R E      G+ R   F   DA+ F
Sbjct: 438 FGALHRAEASGSLGGLTRLWRFQQDDAHIF 467


>gi|24380240|ref|NP_722195.1| seryl-tRNA synthetase [Streptococcus mutans UA159]
 gi|30173154|sp|Q8DSB7|SYS_STRMU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|24378250|gb|AAN59501.1|AE015015_1 putative seryl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R +++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGSKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD ND  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD-NDYVLI--PTAEVPLTNYYRGEIIDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S +   KM  +   I  +L   
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEDSYNELEKMTANAENILQKL--- 312

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
                        +L +  I L  TG+     +K + ++  IP++NT
Sbjct: 313 -------------ELPYRVITLC-TGDMGFSAAKTYDLEVWIPAQNT 345


>gi|322412582|gb|EFY03490.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 425

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 26/184 (14%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   L+D N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEKSYQEL 298

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIP 233
            KM  +   I  +LGL   P R              ++   TG+     +K + ++  IP
Sbjct: 299 EKMTANAENILQKLGL---PYR--------------VIALCTGDMGFSAAKTYDLEVWIP 341

Query: 234 SENT 237
           ++NT
Sbjct: 342 AQNT 345


>gi|168482647|ref|ZP_02707599.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|172043721|gb|EDT51767.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|332077694|gb|EGI88155.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332203581|gb|EGJ17648.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA47368]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|290579784|ref|YP_003484176.1| putative seryl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996683|dbj|BAH87284.1| putative seryl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R +++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGSKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD ND  +I  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD-NDYVLI--PTAEVPLTNYYRGEIIDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S +   KM  +   I  +L   
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEDSYNELEKMTANAENILQKL--- 312

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
                        +L +  I L  TG+     +K + ++  IP++NT
Sbjct: 313 -------------ELPYRVITLC-TGDMGFSAAKTYDLEVWIPAQNT 345


>gi|169832533|ref|YP_001693918.1| seryl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|238688320|sp|B1I9K5|SYS_STRPI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|168995035|gb|ACA35647.1| seryl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|118095671|ref|XP_413774.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 903

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 85/430 (19%), Positives = 171/430 (39%), Gaps = 61/430 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE +R    E+  P + ++ LW  SG +  Y 
Sbjct: 514 FFHDLSPGSCFFLPRGAFLYNTLTDFIREEYHRRNFTEVVSPNIFNSKLWETSGHWQHYS 573

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      +F    +S+R +P       +  R+EL     G+
Sbjct: 574 ENMFSF-EIEKETFALKPMNCPGHCLMFAHRPRSWREMPLRLADFGVLHRNELSGTLSGL 632

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLS 207
            R R F   DA+ +  T E  +    K  + +L+  + +   +  +   + P    G+L 
Sbjct: 633 TRVRRFQQDDAHIY-CTIEQIEEEI-KGCLDFLKSVYSIFGFTFQLHLSTRPENYLGELE 690

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSD 261
                + D  E Q+             +N       SL++   QWT      A Y    D
Sbjct: 691 -----IWDHAEKQL-------------QN-------SLDNFGVQWTLNPGDGAFYGPKID 725

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY--VQMGSYGI 319
           +   K+ D+L    + +   ++    F    +++L    T+ G DG D    V +    +
Sbjct: 726 I---KIKDALGRYHQCATIQLD----FQLPIRFNL----TYVGKDGDDKKRPVIIHRAVL 774

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCD 378
           G++  + A++  ++ GK   WP  ++P ++ ++ +    ++  +  C + +        D
Sbjct: 775 GSVERMIAILAENYGGK---WPFWLSPRQVMVVPVGPTSEEYAQQVCSEFFEAGFMSDVD 831

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS----LEEV 434
           +   D    +  +   A L  +   ++VG K  ++  V ++ R   +  ++S    +E++
Sbjct: 832 L---DQSCTLNKKIRNAQLAQYNFILVVGEKEKANHAVNVRTRDNKVHGEISVSSAIEKL 888

Query: 435 INYASHRFSN 444
             + S R  N
Sbjct: 889 KKFKSLRLPN 898


>gi|317036964|ref|XP_001398427.2| glycyl-tRNA synthetase 1 [Aspergillus niger CBS 513.88]
          Length = 738

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++IE  +      + +G++ +P ++AP K+ ++ +  H Q      +++
Sbjct: 586 SFGIG--RILYSMIEQVYWSREGDEARGVLSFPPAIAPTKVLIVPLSTH-QSFAPLVQRL 642

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +L ++G     DD    IG ++A  D LG P  V V  + V D+   ++ R
Sbjct: 643 TTKLRRMGVSNRVDDSSASIGKRYARNDELGTPFGVTVDFQSVKDNTFTLRDR 695



 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + P+G K
Sbjct: 320 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPQGGK 364


>gi|119472992|ref|ZP_01614827.1| threonyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119444612|gb|EAW25923.1| threonyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 586

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +RE+       E+  P +    LW +SG ++ Y   
Sbjct: 257 QEEAPGMVFWHNDGWSIYRELEEFVREKLREYSYEEVKGPMMMDRSLWEKSGHWEKYSDA 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M        +  I  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTESEKREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 376 VRGFTQDDAHVF 387


>gi|154245583|ref|YP_001416541.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|154159668|gb|ABS66884.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 660

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 7/137 (5%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G   W P G      + A +R  + +    E++ P +  A LW  SG +  Y + 
Sbjct: 257 QEEGPGTVFWHPKGWTLFQELVAYMRR-RLKADYNEVNAPQVLDAGLWETSGHWGWYKEN 315

Query: 93  MLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M ++       ++++     P +      IF+  +KSYR+LP    +     R E     
Sbjct: 316 MFKVQSAGDETKDERVFALKPMNCPGHVQIFKHGLKSYRDLPLRLAEFGAVHRYEPSGAL 375

Query: 148 -GVMRSREFLMKDAYSF 163
            G+MR R F   DA+ F
Sbjct: 376 HGLMRVRGFTQDDAHVF 392


>gi|323669590|ref|NP_001191177.1| bifunctional aminoacyl-tRNA synthetase [Danio rerio]
          Length = 1511

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 118/337 (35%), Gaps = 71/337 (21%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 1119 PTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATK 1178

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            E +     ++   Y R++    L +IP                +V     E + F   D+
Sbjct: 1179 EEATEEVLQILDLYARVYEE--LMAIP----------------VVKGRKTEKEKFAGGDY 1220

Query: 228  MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     T  +  IS                                 S R I+    
Sbjct: 1221 --------TTTVEAFIS--------------------------------ASGRAIQGATS 1240

Query: 288  FYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
             + G  +S      F+     G+       S+GI   R +  +     D  G++ P  VA
Sbjct: 1241 HHLGQNFSRMFEIVFEDPKKPGEKQLAYQNSWGI-TTRTIGVLTMVHGDNMGLVLPPRVA 1299

Query: 346  PFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
              ++ +I         +A   +  D C K  +RL K    V  D       G +F   +L
Sbjct: 1300 CLQVIIIPCGITATLPEAEKDLLLDQCSKYLSRLQKADIRVKADLRDNYSPGWKFNHWEL 1359

Query: 398  LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             G P++  VG K +   +     R TG  E ++++E 
Sbjct: 1360 KGVPIRFEVGPKDLKQGQFVAVRRDTG--EKITVKEA 1394


>gi|212535538|ref|XP_002147925.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210070324|gb|EEA24414.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 594

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 186 PTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTE 245

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           EG+     ++   Y  ++  L
Sbjct: 246 EGAAEEVMQILDHYAHVYEDL 266


>gi|332290253|ref|YP_004421105.1| threonyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330433149|gb|AEC18208.1| threonyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRAKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTSSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 375 RVRGFTQDDAHIF 387


>gi|325120098|emb|CBZ55652.1| putative prolyl-tRNA synthetase [Neospora caninum Liverpool]
          Length = 656

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       GT ++      F+  +G    V   S+G    R +  +I +  D KG
Sbjct: 376 NGRGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGC-TTRSLGVMIMTHGDDKG 434

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGCDVFWDDMGEQI-GSQFA 393
           I+ P  VA  ++ +I I   D+   +    C ++ A L K    V  DD      G ++ 
Sbjct: 435 IVLPPRVASVQVIIIPILFKDENTAEIVAKCRELKALLEKADIRVRIDDRPNYTPGWKYN 494

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             ++ G PL++ +G K ++     +  R T     +  +E++
Sbjct: 495 HWEVKGVPLRLELGPKDLAKGSARVVRRDTNEAYQVQWDELV 536


>gi|323127929|gb|ADX25226.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 425

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 26/184 (14%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   L+D N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEKSYQEL 298

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIP 233
            KM  +   I  +LGL   P R              ++   TG+     +K + ++  IP
Sbjct: 299 EKMTANAENILQKLGL---PYR--------------VIALCTGDMGFSAAKTYDLEVWIP 341

Query: 234 SENT 237
           ++NT
Sbjct: 342 AQNT 345


>gi|308272327|emb|CBX28933.1| Threonyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 637

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 5/160 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  + G+  + P G    + + +  + E    G +E   P + +  LW  SG +++Y + 
Sbjct: 252 HDEAPGMPFFHPKGMSVWEALISYWKIEHRAAGYVETKTPIMLNRSLWERSGHWENYREN 311

Query: 93  M-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           M   + D  + A+   P +      +F     SY++LP    +I L  R EL     G+ 
Sbjct: 312 MYTSVVDETEYAI--KPMNCPGGMLLFGMKPHSYKDLPLRSAEIGLVHRHELSGVLSGLF 369

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           R R F   DA+ F +TPE  +     +     RI+   GL
Sbjct: 370 RVRAFHQDDAHIF-MTPEQIESEILGVLKLVERIYSTFGL 408


>gi|281211698|gb|EFA85860.1| threonyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 730

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H +S G   +LP G +  + +++ +R E  + G  E+  P + S  LW  SG + +Y   
Sbjct: 345 HPYSPGSCFFLPHGTRIYNKLHSFLRSEYRKRGFEEVITPNIYSQKLWETSGHWQNYKDN 404

Query: 93  MLRL-ADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
           M     D    ++  +  P H   +    +SH  SY++LP       +  R+E      G
Sbjct: 405 MFGFQCDHTSYSLKPMNCPGH--CLMFAHKSH--SYKDLPMRIADFGVLHRNETHGSLTG 460

Query: 149 VMRSREFLMKDAYSF 163
           + R R F   DA+ F
Sbjct: 461 LTRVRRFQQDDAHIF 475


>gi|194397764|ref|YP_002037092.1| seryl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|238690854|sp|B5E7F2|SYS_STRP4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194357431|gb|ACF55879.1| seryl-tRNA synthetase [Streptococcus pneumoniae G54]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|15900330|ref|NP_344934.1| seryl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111657630|ref|ZP_01408364.1| hypothetical protein SpneT_02001184 [Streptococcus pneumoniae
           TIGR4]
 gi|148996814|ref|ZP_01824532.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149023698|ref|ZP_01836178.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168576870|ref|ZP_02722720.1| seryl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225860434|ref|YP_002741943.1| seryl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229691|ref|ZP_06963372.1| seryl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254625|ref|ZP_06978211.1| seryl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502204|ref|YP_003724144.1| seryl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067059|ref|YP_003876025.1| seryl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|30173203|sp|Q97SG0|SYS_STRPN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783497|sp|C1CPS1|SYS_STRZT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|14971880|gb|AAK74574.1| seryl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|147757389|gb|EDK64428.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147929635|gb|EDK80627.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|183577467|gb|EDT97995.1| seryl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225728141|gb|ACO23992.1| seryl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237799|gb|ADI68930.1| seryl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|306408596|gb|ADM84023.1| Seryl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|327390820|gb|EGE89160.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332202320|gb|EGJ16389.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA41317]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|66809557|ref|XP_638501.1| glycyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60467108|gb|EAL65146.1| glycyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+G+G  R++ +++E ++      + +G++  P  +AP K S++ + + D++     + I
Sbjct: 527 SFGLG--RIIYSILEQNYYTRENDEQRGVLSLPAIIAPVKASILPLTSSDRIA-PFVQTI 583

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              L +       DD G  IG ++A  D +G P  V +  + V D+ V ++ R T
Sbjct: 584 SKALKEANISTKVDDTGNAIGRKYARTDEIGVPFGVTIDFQTVEDNTVTLRERDT 638



 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 112 EVMTDIFRSHIKSY----RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           E    IF +  K Y    + LPF   QI   FR+E+ PR G++R REF M +   F + P
Sbjct: 246 ETAQGIFTNFGKLYEYNGKKLPFAAAQIGNAFRNEIAPRAGLLRVREFTMAEIEHF-VNP 304

Query: 168 EGSKH 172
               H
Sbjct: 305 NNKTH 309


>gi|221109010|ref|XP_002168836.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 384

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR- 95
           +G+  WLP G    D +   +++ Q + G  ++  P +   +L+V SG Y  YG +  + 
Sbjct: 259 QGLPLWLPKGAALRDRLEQFLKKAQKKAGYEQVVTPHIGQKELYVTSGHYAKYGADSFQP 318

Query: 96  -LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                  +  +  P +     +I+ S   SY++LP  + +    +R E      G+ R R
Sbjct: 319 ITTPAEGEEFLLKPMNCPHHCEIYNSRPWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVR 378

Query: 154 EFLMKD 159
            F   D
Sbjct: 379 GFTQDD 384


>gi|320586315|gb|EFW98994.1| threonyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 524

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 20/149 (13%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G +  + +   +R++  R G  E+  PT+    LW +SG  ++Y  +M 
Sbjct: 92  YSPGSPIFLPNGARVFNRLVDFLRKQYVRYGFQEVITPTIYKKALWAKSGHLENYADDMF 151

Query: 95  RLAD--------RNDKAMIYGPTHEE-----------VMTDIFRSHIKSYRNLPFTFYQI 135
            +          R +     GP   E               IF +   SYR+LP  +   
Sbjct: 152 TVTSASLATGERRGEGGATPGPQDLEDEYGLKPMNCPGHCLIFAAQRHSYRDLPIRYADF 211

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSF 163
               RDEL     G+ R R F   D + F
Sbjct: 212 SPLHRDELSGALSGLTRVRRFHQDDGHVF 240


>gi|158299584|ref|XP_319682.4| AGAP008929-PA [Anopheles gambiae str. PEST]
 gi|157013587|gb|EAA14818.5| AGAP008929-PA [Anopheles gambiae str. PEST]
          Length = 761

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ S G   + P G    + +   IR E  + G  E+  P + +A LW  SG +  Y +
Sbjct: 375 FHELSPGSCFFQPKGAHIYNTLMGFIRSEYRKRGFQEVISPNIYNAKLWQTSGHWQHYAE 434

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M    +   +     P +      +F    +S+R LP       +  R+EL     G+ 
Sbjct: 435 NMFSF-ESEKETFALKPMNCPGHCLMFDHRNRSWRELPLRMADFGVLHRNELSGALTGLT 493

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 494 RVRRFQQDDAHIF 506


>gi|301793653|emb|CBW36038.1| seryl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|168490677|ref|ZP_02714820.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183575046|gb|EDT95574.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|116516325|ref|YP_815885.1| seryl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|148983808|ref|ZP_01817127.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|161410754|ref|NP_357966.2| seryl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|30173153|sp|Q8DR22|SYS_STRR6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122279229|sp|Q04M63|SYS_STRP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116076901|gb|ABJ54621.1| seryl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|147923955|gb|EDK75067.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301799511|emb|CBW32058.1| seryl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|225853986|ref|YP_002735498.1| seryl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|254783495|sp|C1CCH7|SYS_STRZJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225723288|gb|ACO19141.1| seryl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|148988163|ref|ZP_01819626.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148993951|ref|ZP_01823321.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168488101|ref|ZP_02712300.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147926627|gb|EDK77700.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147927540|gb|EDK78567.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183573172|gb|EDT93700.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332075256|gb|EGI85726.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|317136752|ref|XP_001727256.2| prolyl-tRNA synthetase YHR020W [Aspergillus oryzae RIB40]
          Length = 603

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 188 EKKIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 247

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT +G+      +   Y +I+  L
Sbjct: 248 HTAHLTKDGAHDEVMHILDLYAQIYEEL 275


>gi|332993607|gb|AEF03662.1| threonyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 638

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            + + G+  W   G      +   +RE+       E+  P +    LW +SG ++ Y + 
Sbjct: 257 QEEAPGMVFWHNDGWSIYTELEKFVREKLRDYTYDEVKGPLMMDRSLWEKSGHWEKYAEN 316

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M        +  I  P +      IF   +KSYR+LP    +     R+E      G+MR
Sbjct: 317 MFTTESEKREYAI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMR 375

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 376 VRGFTQDDAHIF 387


>gi|39939231|ref|NP_950997.1| threonyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|39722340|dbj|BAD04830.1| threonyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 308

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 132/323 (40%), Gaps = 33/323 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      V   I +++       +  P + + +L+  SG  D Y   M  + 
Sbjct: 9   GLPFWLPKGATVRRIVERYIVDKELSYDYHHVYTPIMANTELYRISGHLDHYASNMFPIM 68

Query: 98  D-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
              N + ++  P +      I++    SY+ LP    ++ +  R E      G+ R RE 
Sbjct: 69  TLENGEKLVLRPMNCPHHMMIYKKTPHSYKELPLRIAELGMMHRFEKSGAVSGLQRVREM 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + DA+ F   P+  K    K+    L ++    +K+  +R         LS+      D
Sbjct: 129 TLNDAHIFA-CPDQIKEEMKKIINLILEVYRDFNIKNYELR---------LSYR-----D 173

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             +T+ + + D M     +E T  + I  L+   ++     A      + ++F +L   +
Sbjct: 174 PNDTEKYFNDDQMWH--HAEKTLKETIQELSLPFKEAIGEAAFYGPKLDVQVFTALGNEE 231

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSH 333
            +S   ++    F    K+ L    TF G D K H  V +    +  M R +A ++E + 
Sbjct: 232 TLSTVQLD----FLLPQKFDL----TFIGEDNKHHRPVVIHRAVVSTMERFLAHLVEET- 282

Query: 334 DGKGIIWPDSVAPFKISLINIKA 356
             KG ++P   AP ++ LI + A
Sbjct: 283 --KG-VFPLWFAPVQVLLIPVSA 302


>gi|238488527|ref|XP_002375501.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220697889|gb|EED54229.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 603

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 188 EKKIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 247

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT +G+      +   Y +I+  L
Sbjct: 248 HTAHLTKDGAHDEVMHILDLYAQIYEEL 275


>gi|62078771|ref|NP_001014042.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Rattus
           norvegicus]
 gi|54035500|gb|AAH83878.1| Threonyl-tRNA synthetase-like 2 [Rattus norvegicus]
          Length = 553

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y  
Sbjct: 402 FHDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTEVLSPNMYNSKLWETSGHWQHYSN 461

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M       D      P +      +F    +S+R +P  F    +  R+EL     G+ 
Sbjct: 462 NMFTFDIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPVRFADFGVLHRNELSGTLTGLT 520

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 521 RVRRFQQDDAHIF 533


>gi|145608852|ref|XP_369806.2| hypothetical protein MGG_06321 [Magnaporthe oryzae 70-15]
 gi|145016282|gb|EDK00772.1| hypothetical protein MGG_06321 [Magnaporthe oryzae 70-15]
          Length = 665

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 316 SYGIGAMRVVAAVIESSH---------DGKGII-WPDSVAPFKISLINIKAHDQVCRDAC 365
           S+GIG  R++  ++E ++         + +G++ +   VAP K+ ++ +  HD       
Sbjct: 506 SFGIG--RILYCLLEHNYWTRASDGGDEARGVLSFTPVVAPTKVLIVPLSRHDDFV-PFV 562

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +KI  +L  VG     DD    IG +++  D LG PL + V  + V D  + ++ R T +
Sbjct: 563 QKISQKLRSVGVSSRVDDSSATIGRRYSRNDELGTPLGITVDFQTVKDGTITLRDRDTTV 622

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +     ++++       S N+
Sbjct: 623 QVRADQDKIVEAIQELVSGNK 643



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + +PF    I   +R+E+ PR G++R REFLM +   F     G KH
Sbjct: 240 QQMPFASASIGKSYRNEISPRSGLLRVREFLMAEIEHFVDPESGKKH 286


>gi|254441196|ref|ZP_05054689.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198251274|gb|EDY75589.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 649

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G   W P G      +   +R +Q   G +E++ P +    LW +SG ++ + +
Sbjct: 261 MQEEASGQIFWHPNGWLIFTQLQDYMRRKQRAGGYVEVNTPQVVDRKLWEQSGHWEKFQE 320

Query: 92  EMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M  +       R        P +      I+   +KSYR+LP    +     R E    
Sbjct: 321 HMFIVEVDEEHAREKAVNALKPMNCPCHVQIYNQGLKSYRDLPVRMAEFGSCNRYEPSGA 380

Query: 147 F-GVMRSREFLMKDAYSF 163
             G+MR R F   D + F
Sbjct: 381 LHGIMRVRGFTQDDGHIF 398


>gi|224373363|ref|YP_002607735.1| threonyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|254783530|sp|B9L5U7|SYT_NAUPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|223589770|gb|ACM93506.1| threonyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 611

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G     N+  ++     R   + +  P L  + +W  SG Y +Y + M    
Sbjct: 231 GMPIWLPNGALLRGNLEKLLYSAHIRREYLPVRGPELLRSHMWKISGHYYNYKENMYFTE 290

Query: 98  DRNDK----AMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
             ND     A  YG  P +      IF   ++SY+ LP   ++     R E      G++
Sbjct: 291 IENDDPEKPADEYGIKPMNCLAHVKIFGHKVRSYKELPLRLFEFGTVHRHEKSGVLHGLL 350

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGD 205
           R REF   DA+ F   P+  +    K+      I  R G      I  R E   IG D
Sbjct: 351 RVREFTQDDAHIF-CRPDQIEEEVIKVLEFVDSIMERFGFNYEMEISTRPEKS-IGSD 406


>gi|159155613|gb|AAI54534.1| LOC562037 protein [Danio rerio]
          Length = 476

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 118/337 (35%), Gaps = 71/337 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 84  PTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATK 143

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E +     ++   Y R++    L +IP                +V     E + F   D+
Sbjct: 144 EEATEEVLQILDLYARVYEE--LMAIP----------------VVKGRKTEKEKFAGGDY 185

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                    T  +  IS                                 S R I+    
Sbjct: 186 --------TTTVEAFIS--------------------------------ASGRAIQGATS 205

Query: 288 FYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            + G  +S      F+     G+       S+GI   R +  +     D  G++ P  VA
Sbjct: 206 HHLGQNFSRMFEIVFEDPKKPGEKQLAYQNSWGI-TTRTIGVLTMVHGDNMGLVLPPRVA 264

Query: 346 PFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
             ++ +I         +A   +  D C K  +RL K    V  D       G +F   +L
Sbjct: 265 CLQVIIIPCGITATLPEAEKDLLLDQCSKYLSRLQKADIRVKADLRDNYSPGWKFNHWEL 324

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G P++  VG K +   +     R TG  E ++++E 
Sbjct: 325 KGVPIRFEVGPKDLKQGQFVAVRRDTG--EKITVKEA 359


>gi|296242499|ref|YP_003649986.1| threonyl-tRNA synthetase editing domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296095083|gb|ADG91034.1| Threonyl-tRNA synthetase editing domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 613

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 142/343 (41%), Gaps = 46/343 (13%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSREFL 156
           D +   + Y   H++    + R  + SY +LPF  +++   +R E R    +  R R+F 
Sbjct: 277 DEDRFVLRYAACHQQFA--MLRDWVISYSHLPFGAFEVADSYRLEQRGEVALCFRLRKFY 334

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D            H +NK     +R+   +  K +    E+G +G      + V +D 
Sbjct: 335 MPDL-----------HIFNKNLEEAVRVSRIVQEKIL---EEAGKLGRKYVALYNVTSDF 380

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E      ++ ++F +  EN        L +++      +    + H   + D+L   + 
Sbjct: 381 LENH---RQELLEF-VRRENYPV-----LLAVIPGGIYYWVLNVEYH---IIDNLKRPRE 428

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSH- 333
           ++   I+VG+    G ++++    TF    G+ H+  +    I  G  R +  +++++  
Sbjct: 429 IATFQIDVGN----GRRFNI----TFVDEKGEKHHPVIIHTAILGGVERYIYMILDTAAI 480

Query: 334 ---DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              +G+    P  ++P +  +I +        +   KI   L   G  V  DD  E +G 
Sbjct: 481 AEANGQTPYIPTWISPVQARIIPVSKE---YVEHALKIAVELQNQGFRVDVDDRDETLGK 537

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +   A     P  V+VG + V  + + ++ R +  ++ MSLEE
Sbjct: 538 KIRDAGREWIPYIVVVGEREVKTNTLNVRIRRSNDQKAMSLEE 580


>gi|38569901|gb|AAR24471.1| predicted threonyl-tRNA synthetase [uncultured crenarchaeote
           DeepAnt-EC39]
          Length = 616

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 52/325 (16%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SY+NLP+  Y++ +  FR E      G+ R R F M D ++F      +   + K F   
Sbjct: 302 SYKNLPYKLYELTRYSFRREQSGELVGLRRLRAFTMPDCHAFCKDMSQAIDEFRKRFDLS 361

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   LG++                       +  E  +  ++DF +     EN D   
Sbjct: 362 REVLSGLGIEE----------------------NDYEVGIRFTEDFYN-----ENKDL-- 392

Query: 242 IISLNS------IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
           I  L S      ++E W   +            D+L +   +S   I+V +    G +Y 
Sbjct: 393 IKQLVSKVGKPVLIEMWKEKFFYFVLKWEFNFIDNLGKASSLSTDQIDVEN----GKRYG 448

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESS----HDGKGIIWPDSVAPFKIS 350
           +  +      + + H + + +   GA+ RV+ A++E S     DGK   +P  +AP ++ 
Sbjct: 449 ITFTDE---KNEQQHPIILHNSPSGAVERVIYALLEKSAMQIKDGKIPQFPLWLAPIQVR 505

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           LI +K  D     A   + ++L++    V  DD  + IG +   A+       +++G K 
Sbjct: 506 LIPLK--DDFLEFAS-NLASKLTEQNIRVDIDDRNDTIGKRIRDAEKEWINYVLVIGEKE 562

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVI 435
           ++ S + ++ R TG    +S E+ +
Sbjct: 563 MNSSSLSVRDRTTGDVRQLSTEDFV 587


>gi|282889555|ref|ZP_06298097.1| hypothetical protein pah_c001o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500568|gb|EFB42845.1| hypothetical protein pah_c001o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 505

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 15/114 (13%)

Query: 82  ESGRYDSYGKEML-----RLADRNDK---------AMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+   + + KE       RL +RN K          +I  PT E ++ + F   ++SYR+
Sbjct: 82  EAAHVEGFAKECAVVTHHRLEERNGKLIPTGELEEPLIVRPTSETIIGESFSRWVESYRD 141

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           LP    Q     R E+RPR   +R+ EFL ++ ++   + E +     KM   Y
Sbjct: 142 LPLLINQWANVVRWEMRPRI-FLRTAEFLWQEGHTVHASSEEAFEETLKMLEVY 194


>gi|251783202|ref|YP_002997507.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391834|dbj|BAH82293.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 425

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 26/184 (14%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   L+D N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQEL 298

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIP 233
            KM  +   I  +LGL   P R              ++   TG+     +K + ++  IP
Sbjct: 299 EKMTANAENILQKLGL---PYR--------------VIALCTGDMGFSAAKTYDLEVWIP 341

Query: 234 SENT 237
           ++NT
Sbjct: 342 AQNT 345


>gi|313230616|emb|CBY18832.1| unnamed protein product [Oikopleura dioica]
          Length = 768

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 19/104 (18%)

Query: 316 SYGIGAMRVVAAVIESSH-----DG-KGIIWPDSVAPFK---ISLINIK----AHDQVCR 362
           S+G+G  R+++A++E S      DG K   +P SVAP+K   +++IN+K      D V R
Sbjct: 556 SFGLG--RILSALLEHSFQQREVDGRKFFTFPPSVAPYKASVMTIINMKELDVKADAVAR 613

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
             CE+    LS +  D   D  G+ IG ++++ D +G P  +++
Sbjct: 614 LICEE----LSSLSVDYRVDTGGKTIGRKYSLNDEIGVPYGIVI 653


>gi|329765249|ref|ZP_08256829.1| threonyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138155|gb|EGG42411.1| threonyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 624

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 134/323 (41%), Gaps = 46/323 (14%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SY+NLP+  Y++ +  FR E      G+ R R F M D ++F    E S           
Sbjct: 310 SYKNLPYKLYELTRYSFRREQSGELVGLRRLRAFTMPDCHAFCKDIEQS----------- 358

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                   +K I +R +   +  ++  E  ++    E  +  ++DF +       +  ++
Sbjct: 359 --------IKEIKVRFD---LSRNVLKELGIVDSDYEMAIRFTEDFYN----ENKSSIEE 403

Query: 242 IISLNS---IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           ++  +    +VE W   +            DS+ +   +S   I+V +    G +Y +  
Sbjct: 404 LVKKHGRPVLVEMWKEKFFYFVLKWEFNFVDSMGKASALSTDQIDVEN----GNRYGIEF 459

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESS----HDGKGIIWPDSVAPFKISLIN 353
                  + + H + + +   GA+ R+V  ++E +     +G+   +P  +AP ++ +I 
Sbjct: 460 ---VDEHNVRKHPIILHNSPSGAIERIVYVLLEKAAQDIKEGRKPQFPLWLAPTQVRVIP 516

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +K   +     C+ +  +LS     V  DD  E IG +   A+       +++G K  + 
Sbjct: 517 LK---EEFSSICDTLVDKLSSFNIRVDIDDRNESIGKRIRDAEKDWIRYTLVIGEKEANS 573

Query: 414 SKVEIKHRLTGIREDMSLEEVIN 436
             + I+ R TG   +++ +  IN
Sbjct: 574 ENLSIRDRQTGNVRELTFDNFIN 596


>gi|322514773|ref|ZP_08067797.1| threonine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322119269|gb|EFX91397.1| threonine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 653

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 147/411 (35%), Gaps = 48/411 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 266 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 325

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 326 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 384

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D  
Sbjct: 385 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFSNIQVKLSTRPENRIGDD-- 441

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       D +   + +    ++       I E   A Y    +      
Sbjct: 442 ----AMWDRAE-------DGLAKALTANGLSYE-------IQEGEGAFYGPKIEFALRDC 483

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRV 324
            D          R  + G I      ++LP  + A++   D G+   V +    +G++  
Sbjct: 484 LD----------REWQCGTI---QLDFALPGRLDASYVAEDNGRRTPVMIHRAILGSIER 530

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+   LS  G     D  
Sbjct: 531 FIGIITEEYAG---FFPTWLAPTQAVVMNITDSQA---DYVQKVTKALSDAGIRAKSDLR 584

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            E++G +     L   P  ++ G K +   KV ++ R        ++EE +
Sbjct: 585 NEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTRKGADLGTFTIEEFV 635


>gi|294011681|ref|YP_003545141.1| prolyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292675011|dbj|BAI96529.1| prolyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 508

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 13/167 (7%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + GT +S   +  F+ A+G+    Q  S+G+ + R++  +I    D  G+
Sbjct: 232 GKALQAGTSHFLGTTFSSAQNIKFQNAEGQQELAQTTSWGM-STRMIGGLIMVHGDDDGL 290

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             P  +AP+++ ++ +      D    D C  + A L++   DVF + +   +  + A A
Sbjct: 291 RVPPRIAPYQVVVVPMLRDTDEDAAILDYCGDLVAELNR--QDVFREPVRALLDRRPAKA 348

Query: 396 D-------LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                     G P+ + VG + V+   V +  R    RED  L+  I
Sbjct: 349 ANKRWGWVKKGAPIVIEVGGRDVAGGNVSVIRRDRLYREDGKLDSRI 395


>gi|222148633|ref|YP_002549590.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|254783504|sp|B9JWF4|SYT_AGRVS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221735619|gb|ACM36582.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 666

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 24/217 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L IL E    AE   H+ + R   + H  +   G+  W   G K   ++ A +R     
Sbjct: 234 YLHILAE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWKMFQSLTAYMRRRLAN 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
           T   E++ P +    LW  SG +  Y + M  +            + + +     P +  
Sbjct: 290 TYQ-EVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTNPNDPEADQRVFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F  T E   
Sbjct: 349 GHVQIFKHGLKSYRELPVRLAEFGLVHRYEASGALHGLMRVRGFTQDDAHVF-CTEEQMA 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               ++    L ++   G K + ++  + P   +G D
Sbjct: 408 AECLRINDLILSVYEDFGFKEVVVKLSTRPEKRVGSD 444


>gi|319744352|gb|EFV96713.1| serine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 425

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IYS++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYSFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD      +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD---SPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|312384017|gb|EFR28854.1| hypothetical protein AND_02684 [Anopheles darlingi]
          Length = 766

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G    + +   IR E  + G  E+  P + +A LW  SG +  Y + 
Sbjct: 289 HELSPGSCFFQPKGAFIYNTLMNFIRAEYRKRGFQEVISPNIYNAKLWQTSGHWQHYAEN 348

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       +   +  P +      IF    +S+R LP       +  R+EL     G+ R
Sbjct: 349 MFSFESEKETFAL-KPMNCPGHCLIFDHRNRSWRELPLRMADFGVLHRNELSGALTGLTR 407

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 408 VRRFQQDDAHIF 419



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGC 377
           +G++  + A++  ++ GK   WP  ++P ++ ++ +  A+D+      +K+  RL   G 
Sbjct: 546 LGSVERMIAILTENYAGK---WPFWLSPRQVMVVPVGPAYDEYA----DKVRLRLHDAGF 598

Query: 378 DVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            V  D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  +++++E++ 
Sbjct: 599 TVEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTRDNKVHGEVTVDELVT 658


>gi|229582573|ref|YP_002840972.1| Glycine--tRNA ligase [Sulfolobus islandicus Y.N.15.51]
 gi|228013289|gb|ACP49050.1| Glycine--tRNA ligase [Sulfolobus islandicus Y.N.15.51]
          Length = 473

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 290 FGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           + T Y L + +   GA+    G   +V   S+G+  + +   ++          WP    
Sbjct: 307 YRTDYDLTVHSKHSGANLSENGMIPHVVEPSFGLDRIAMAVLLLNYDPSPSDRNWPLFRI 366

Query: 346 PFKISLINIKA----HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           P+KIS + +      H     +  EK+   L  +G   F      +I +Q+A AD LG P
Sbjct: 367 PYKISPLEVGIASIHHSDEYINVAEKVDLTLRSLGYVTFKLFEKGKIEAQYAKADTLGIP 426

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L V V SK + ++ V I++R T  +  +++ E+
Sbjct: 427 LVVTVDSKTLDENTVTIRNRDTKAQIRVNIREI 459


>gi|83770284|dbj|BAE60417.1| unnamed protein product [Aspergillus oryzae]
          Length = 620

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 205 EKKIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 264

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT +G+      +   Y +I+  L
Sbjct: 265 HTAHLTKDGAHDEVMHILDLYAQIYEEL 292


>gi|124486137|ref|YP_001030753.1| hypothetical protein Mlab_1319 [Methanocorpusculum labreanum Z]
 gi|124363678|gb|ABN07486.1| threonyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 586

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 11  LQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           LQE   +AE   H+ +   ++  M      G   +LP G    +++    RE     G  
Sbjct: 186 LQE---EAERRDHRKIGKEMKLFMFSDEGPGFPFFLPNGMIVRNSLLDYWRELHAENGYQ 242

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S P + +  LW  SG +D Y K+ +     +D+     P +      ++ +   SYR 
Sbjct: 243 EISTPLIMNRCLWETSGHWDHY-KDNMYATCIDDEDYCIKPMNCPGGVMVYANEPHSYRE 301

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           LP    ++ L  R EL+    G+ R R F   DA+ F
Sbjct: 302 LPMRLAELGLVHRHELKGTLHGLFRVRCFTQDDAHIF 338


>gi|116626335|ref|YP_828491.1| threonyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|116229497|gb|ABJ88206.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/395 (20%), Positives = 151/395 (38%), Gaps = 43/395 (10%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G+I  H KG      + +K L++    +R++  + G   +  P +   DLW  SG  + Y
Sbjct: 262 GLIFFHPKG-----GIIRKLLED---WMRDQYLKRGYSLVYTPHVAKLDLWKTSGHANFY 313

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            + M    + +D      P +      I+    +SYR+LP    ++   +R E      G
Sbjct: 314 AQNMFTPIELDDAEYQLKPMNCPFHILIYADRQRSYRDLPVRLGELGTVYRYERSGTLNG 373

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R R F   DA+ F +  +  +   N +  + +      G +     AE     G  S 
Sbjct: 374 LFRVRGFTQDDAHIFCMQSQAEEEVVNCLQFA-IDTLAAYGFEK--YDAEISTWDGGASG 430

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKL 267
           ++    D  E      +  +            D + +N+ +V    A Y    DV   KL
Sbjct: 431 KYDGTPDQWEMAEGALRRAV------------DKLKINAKVVADEAAFYGPKIDV---KL 475

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVA 326
            D++    ++S    +      FG +Y         G DGK H   M    + G++    
Sbjct: 476 VDAIGRKWQLSTVQFDFTLPRRFGLEYI--------GEDGKAHQPIMVHRALYGSIERFF 527

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + G   +W   +AP + +++ I        +    I  +L + G     D+  E
Sbjct: 528 GILVEHYAGAFPVW---LAPVQATILPITDRQT---EYARGIKKQLEEAGIRATVDERNE 581

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++  +   A +   P  ++VG +     KV +++R
Sbjct: 582 KVNLKIRDAQMQKIPYMLVVGDREQESGKVAVRNR 616


>gi|296203929|ref|XP_002749128.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Callithrix jacchus]
          Length = 726

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y + 
Sbjct: 339 HDLSPGSCFFLPRGAFIYNTLVDFIREEYHKRDFTEVLSPNMFNSKLWEASGHWQHYSEN 398

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D      P +      +F    +S+R +P  F    +  R+EL     G+ R
Sbjct: 399 MFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSGTLSGLTR 457

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 458 VRRFQQDDAHIF 469


>gi|22536539|ref|NP_687390.1| seryl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|25010417|ref|NP_734812.1| seryl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76787984|ref|YP_329077.1| seryl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76798994|ref|ZP_00781192.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77406550|ref|ZP_00783601.1| seryl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77411466|ref|ZP_00787811.1| seryl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|54039691|sp|P67566|SYS_STRA5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|54042042|sp|P67565|SYS_STRA3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123602391|sp|Q3K326|SYS_STRA1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|22533373|gb|AAM99262.1|AE014208_2 seryl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|23094769|emb|CAD45988.1| seryl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76563041|gb|ABA45625.1| seryl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76585644|gb|EAO62204.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77162469|gb|EAO73435.1| seryl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77174857|gb|EAO77675.1| seryl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 425

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IYS++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYSFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD      +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD---SPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|77409224|ref|ZP_00785933.1| seryl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77172167|gb|EAO75327.1| seryl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 425

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IYS++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYSFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD      +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD---SPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|302423350|ref|XP_003009505.1| bifunctional aminoacyl-tRNA synthetase [Verticillium albo-atrum
           VaMs.102]
 gi|261352651|gb|EEY15079.1| bifunctional aminoacyl-tRNA synthetase [Verticillium albo-atrum
           VaMs.102]
          Length = 535

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 65  GAIEMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFR 119
           G  E S P  L S  L  E    + +  E+  +    DK     +   PT E VM   + 
Sbjct: 126 GVEETSFPIFLSSKSLEKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYS 185

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT E +     ++  
Sbjct: 186 KWIRSHRDLPLRLNQWNSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGKEVLEILE 245

Query: 180 SYLRIFHRL 188
            Y  ++ +L
Sbjct: 246 LYAGVYEQL 254


>gi|77414886|ref|ZP_00790994.1| seryl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77159061|gb|EAO70264.1| seryl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 425

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IYS++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYSFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD      +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD---SPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYQELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              ++   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VITLCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|312136460|ref|YP_004003797.1| glycyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224179|gb|ADP77035.1| glycyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 591

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 22/134 (16%)

Query: 117 IFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F+  ++ YRN LPF   QI   FR+E+ PR GV+R REF   +A  F + P+   H   
Sbjct: 176 LFKRLMRFYRNKLPFGVVQIGKSFRNEISPRQGVIRLREFTQAEAEIF-VEPDNKTHPK- 233

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---------EFIVLADTGETQVFCSKD 226
                    FH++  + + + +    + G+            E I+ ++     ++ +K+
Sbjct: 234 ---------FHKVADEKLKLFSAEKQLNGEKPEKISLKEAVDENIISSELLAYHLYLTKE 284

Query: 227 FM-DFPIPSENTDF 239
           F+ D  IP E   F
Sbjct: 285 FLTDLGIPEEMIRF 298


>gi|312879874|ref|ZP_07739674.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Aminomonas
           paucivorans DSM 12260]
 gi|310783165|gb|EFQ23563.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Aminomonas
           paucivorans DSM 12260]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G   L  +    + E  R G  E+  P +    LW  SG +D Y ++ +     +++ 
Sbjct: 264 PKGMVVLGELVNFWKREHQRRGYCEIRTPLILDRALWERSGHWDHY-RDNMYFTTIDERP 322

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      +F+S  +SYR+LP    ++    R E      G+MR R F   DA+ 
Sbjct: 323 FAIKPMNCPGGILVFKSSTRSYRDLPLRMGELGTVHRHERSGVLHGLMRVRCFTQDDAHL 382

Query: 163 FDLTPE 168
           +  TP+
Sbjct: 383 Y-CTPD 387


>gi|296804108|ref|XP_002842906.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238845508|gb|EEQ35170.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 600

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 185 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 244

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E +     ++   Y  ++ +L
Sbjct: 245 HTAHLTKEEAHEEVLQILQHYAHVYEQL 272


>gi|225559335|gb|EEH07618.1| prolyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 606

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 199 PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTE 258

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
            G++    ++   Y  ++  L
Sbjct: 259 GGAREEVLQILEHYAHVYEEL 279


>gi|269925242|ref|YP_003321865.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788902|gb|ACZ41043.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 596

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 79/390 (20%), Positives = 148/390 (37%), Gaps = 40/390 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G      +   I + + R G   +  P +    L+  SG +  Y   M   +
Sbjct: 216 GLVLWLPNGSIIRRELENFIVKAEAREGYQHVYTPHIAKLGLYKTSGHWQHYRDAMFPPM 275

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            L D  +  +        +M  I++  ++SYR+LP    ++   +R E      G+ R R
Sbjct: 276 VLEDGEEYELRPMTCPHHIM--IYKHSLRSYRDLPLRIAELGTVYRYEKSGELTGMSRVR 333

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F + DA+ F   P+  K  + ++      ++  +G      R              + L
Sbjct: 334 GFTINDAHIF-CRPDQLKEEFIRVIQLMHEVYRAVGFHDYVYR--------------LSL 378

Query: 214 ADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            D  + + +   D M +    +     D++ +     E   A Y    DV    + D L 
Sbjct: 379 RDPSDKEKYVEGDEMWNNAENAIRQALDELGADYVEAEGEAAFYGPKLDV---MVRDVLG 435

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIES 331
                S   ++    FY   ++ L     +  ADG +   V +    IG+M    A +  
Sbjct: 436 REFAASTNQLD----FYLPERFDL----EYIDADGERRRPVMIHRAPIGSMERFFAFLTE 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            H G   +W   ++P ++ +I I A   +     E++ +  S+    V  D   E++ ++
Sbjct: 488 QHAGAFPVW---LSPVQVVVIPI-ADRHIP--YAEEVASAFSRHNVRVNVDARNERMNAK 541

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              A +   P  +IVG +      V ++ R
Sbjct: 542 IRDAQMQKIPYMLIVGDREAQAGTVAVRKR 571


>gi|242024338|ref|XP_002432585.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
 gi|212518045|gb|EEB19847.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
          Length = 717

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 155/413 (37%), Gaps = 50/413 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   + P G    + +   IR E  + G  E+  P + +  LW  SG +  Y 
Sbjct: 329 FFHELSPGSCFFYPKGAFIYNTLVEFIRSEYRKRGFQEVITPNIYNVKLWETSGHWQHYA 388

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +      IF +  +S+R LP       +  R+E      G+
Sbjct: 389 ENMFSF-ELEKETYALKPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNEFSGALSGL 447

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDL 206
            R R F   DA+ F  T    K   +        ++   G  +  +R  + P   +G   
Sbjct: 448 TRVRRFQQDDAHIF-CTVNQIKSEISGALEFLKNVYGVFGF-TFQLRLSTRPEKYLGE-- 503

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
               I + D  E Q+  S D   FP      D               A Y    D+    
Sbjct: 504 ----INVWDQAEKQLTESLDEFGFPWKLNPGD--------------GAFYGPKIDI---T 542

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADG-KDHYVQMGSYGIGAMR 323
           + D+L    + +   ++          + LP+  +  + G  G K   V +    +G++ 
Sbjct: 543 ILDALKRAHQCATIQLD----------FQLPIRFNLNYIGESGDKIRPVIIHRAILGSVE 592

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWD 382
            + A++  S+ GK   WP  ++P +  +I +     +  +   + I+   +   CD F D
Sbjct: 593 RMIAILTESYGGK---WPFWLSPRQSIVIPVGLPFYEYAKKVKDDIFN--AGFSCD-FDD 646

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D G+ +  +   A L  +    +VG K  +   V ++ R   +  + S+ +VI
Sbjct: 647 DEGDTMNKKIRNAQLAQYNFIFVVGEKEKNAGTVNVRTRDNIVHGEFSVGDVI 699


>gi|73951029|ref|XP_857141.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 2
           [Canis familiaris]
          Length = 799

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE +R    E+  P + ++ LW  SG +  Y + 
Sbjct: 412 HDLSPGSCFFLPRGAFIYNTLMDFIREEYHRRNFTEVLSPNMFNSKLWETSGHWQHYSEN 471

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D         P +      +F    +S+R +P       +  R+EL     G+ R
Sbjct: 472 MFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRLADFGVLHRNELSGTLSGLTR 530

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 531 VRRFQQDDAHIF 542


>gi|73951035|ref|XP_857273.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 5
           [Canis familiaris]
          Length = 687

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE +R    E+  P + ++ LW  SG +  Y 
Sbjct: 410 FFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHRRNFTEVLSPNMFNSKLWETSGHWQHYS 469

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    D         P +      +F    +S+R +P       +  R+EL     G+
Sbjct: 470 ENMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRLADFGVLHRNELSGTLSGL 528

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 529 TRVRRFQQDDAHIF 542


>gi|330836194|ref|YP_004410835.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
 gi|329748097|gb|AEC01453.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
          Length = 588

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 39/387 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+E  + G   +  P +  + LW  SG    Y   M    
Sbjct: 211 GLVYWHPRGARVRVAIENFWRDEHYKNGYEMVFSPHVGRSWLWETSGHLGFYKDSMYPAM 270

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +       P +      I+ +  +SYR+LP    ++   +R E      G+MR R F 
Sbjct: 271 EMDKSDYYVKPMNCPFHIMIYNNSKRSYRDLPIRMAELGTVYRYEKAGALHGLMRVRGFT 330

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F  TPE       K+    L +    G + +     + P               
Sbjct: 331 QDDAHLF-CTPEQMDDEIRKVLEFSLYMLRSFGFQDVKAYLSTRP-----------EESV 378

Query: 217 GETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           GE + +  +   +   I  E   ++       + E   A Y    D+   K+ D++    
Sbjct: 379 GERERWDAATKALRNAIEKEGLAYE-------VDEGGGAFYGPKIDL---KVKDAIGREW 428

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHD 334
           ++S     V   F    ++ +    TF   DG++    M     +G++     V+  ++ 
Sbjct: 429 QLST----VQFDFNMSDRFQM----TFVDKDGQEKRPYMIHRALLGSIERFFGVLIENYA 480

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G    +P  +AP +I ++ +    +        +  RL K G     D   +++ ++   
Sbjct: 481 G---AFPPWLAPEQIMVVPV---GEAFFPYATALRDRLRKEGLRADADLSDDRMNAKIRN 534

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           A L   P Q++VG +  S+ KV +++R
Sbjct: 535 AQLHKIPYQLVVGEREQSEDKVSVRYR 561


>gi|73951037|ref|XP_536172.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 1
           [Canis familiaris]
          Length = 802

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE +R    E+  P + ++ LW  SG +  Y + 
Sbjct: 415 HDLSPGSCFFLPRGAFIYNTLMDFIREEYHRRNFTEVLSPNMFNSKLWETSGHWQHYSEN 474

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D         P +      +F    +S+R +P       +  R+EL     G+ R
Sbjct: 475 MFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRLADFGVLHRNELSGTLSGLTR 533

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 534 VRRFQQDDAHIF 545


>gi|73951033|ref|XP_857231.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 4
           [Canis familiaris]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE +R    E+  P + ++ LW  SG +  Y + 
Sbjct: 412 HDLSPGSCFFLPRGAFIYNTLMDFIREEYHRRNFTEVLSPNMFNSKLWETSGHWQHYSEN 471

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D         P +      +F    +S+R +P       +  R+EL     G+ R
Sbjct: 472 MFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRLADFGVLHRNELSGTLSGLTR 530

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 531 VRRFQQDDAHIF 542


>gi|52425108|ref|YP_088245.1| threonyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|73919804|sp|Q65TQ0|SYT_MANSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52307160|gb|AAU37660.1| ThrS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 643

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFTNIAVKLSTRPENRIGDD 431


>gi|261189484|ref|XP_002621153.1| glycyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239591730|gb|EEQ74311.1| glycyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239608956|gb|EEQ85943.1| glycyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
 gi|327354027|gb|EGE82884.1| glycyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 656

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++A ++E  +      + +G++ +P  VAP K+ L+ +  H    +    ++
Sbjct: 504 SFGIG--RILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPLSNHPSF-QPLVHRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 561 TLKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRERDTTKQVR 620

Query: 429 MSLEEV 434
            S EE+
Sbjct: 621 ASEEEI 626



 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K     H    M +S
Sbjct: 238 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHPRFHEVQDMELS 296

Query: 181 YL 182
           +L
Sbjct: 297 FL 298


>gi|255720300|ref|XP_002556430.1| KLTH0H13046p [Lachancea thermotolerans]
 gi|238942396|emb|CAR30568.1| KLTH0H13046p [Lachancea thermotolerans]
          Length = 675

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 121/325 (37%), Gaps = 70/325 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++SYR+LP    Q     R E +     +R+REFL ++ ++  L  
Sbjct: 278 PTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLGQ 337

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E +     ++   Y  ++    L ++P                +V     E + F   DF
Sbjct: 338 EEAIEEVMQILDFYAGVYEE--LLAVP----------------VVKGKKTEKEKFAGGDF 379

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                              +  E +                  +P+  R    GI+    
Sbjct: 380 ------------------TTTCEGY------------------IPQTGR----GIQGATS 399

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
            + G  +S   + + +   G +H   +    S+G+ + RV+  ++    D KG++ P  V
Sbjct: 400 HHLGQNFSKMFNISVENPLGPEHPKVFAHQNSWGL-STRVIGVMVMIHSDNKGLVIPPRV 458

Query: 345 APFKISL----INIKAHDQ---VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVAD 396
           +  +  +    IN K  D+   V      +I  +L       F D +     G +F+  +
Sbjct: 459 SQHQCVVLPVGINSKTSDEQRAVIHQKAREIEQKLRASNVRAFGDYNDNYTPGWKFSQYE 518

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L G PL++  G K ++  +V +  R
Sbjct: 519 LKGIPLRLEFGPKDMAQDQVSVVRR 543


>gi|42523294|ref|NP_968674.1| hypothetical protein Bd1807 [Bdellovibrio bacteriovorus HD100]
 gi|39575499|emb|CAE79667.1| thrS [Bdellovibrio bacteriovorus HD100]
          Length = 416

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 2/176 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G    D +  + RE +   G   +  P L   DL+ +SG    Y   M    
Sbjct: 37  GLPLWLPAGVVIRDELEKLARELEFLAGYQRVVSPHLAKEDLYHQSGHLPYYEDSMYPSM 96

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  +      P        IF + + SYR LP    +    +R E      G+MR R   
Sbjct: 97  DLENVRYRLRPMCCPHHHKIFSAKLHSYRELPLRLAEYGQVYRYEGSGALSGLMRVRGLC 156

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
             DA+ + +     K   +K+   Y + +  LG+    +R   G    + S +++ 
Sbjct: 157 QNDAHLY-VRQNQVKVEIHKVLEMYQKAYRILGISDYRLRLSRGVEAEEASQKYVA 211


>gi|326437267|gb|EGD82837.1| threonyl-tRNA synthetase 1 [Salpingoeca sp. ATCC 50818]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 16/149 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M H  S G   +LP G + L  +  +IR +    G  E+  P + S  LW  SG +D Y 
Sbjct: 175 MQHDTSPGAPFFLPHGVRLLHRLTDLIRRQFRIRGYEEVMTPLVFSQKLWETSGHWDHYR 234

Query: 91  KEMLRLADRNDKAMI---------------YGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            +M R+   ++K+                   P +      IF+   +S+ +LP    + 
Sbjct: 235 DDMYRVMGFDEKSSGNGGNDDDDDDEYLRGLKPMNCPAHCLIFKHTKRSHHDLPLRLGEF 294

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSF 163
               R+E      G+ R R+F   DA+ F
Sbjct: 295 SALHRNEASGALAGLTRVRQFHQDDAHIF 323


>gi|225461914|ref|XP_002265484.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 745

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G + +LP G +  + +   I+ +    G  E+  PT+ +  LW  SG   +Y 
Sbjct: 364 FCHPLSPGSWFFLPHGGRIYNKLMEFIKAQYRERGYHEVFSPTMYNMQLWETSGHAANY- 422

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE + + +   +     P +      +F   ++SYR LP       +  R+E      G+
Sbjct: 423 KENMFVFEVEKQEFGLKPMNCPGHCLMFEHRVRSYRELPLRLADFGVLHRNEASGALTGL 482

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 483 TRVRRFQQDDAHIF 496


>gi|254423005|ref|ZP_05036723.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196190494|gb|EDX85458.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 618

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RL 96
           G+  W P G      +   ++ EQ   G + +  P +   DL+  SG +  Y +++   +
Sbjct: 235 GLPLWTPKGTVLRSTLEDYLKGEQVARGYLPVVTPHVGRVDLFKTSGHWQKYSEDLFPMM 294

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            +  D+  +    +      I++S ++SY+ LP    +    +R E      G+ R R F
Sbjct: 295 GESEDEGFVLKAMNCPFHVQIYKSQLRSYKELPIRLAEFGTVYRYEQSGELGGLTRVRGF 354

Query: 156 LMKDAYSFDLTP 167
              DA+ F +TP
Sbjct: 355 TQDDAHLF-VTP 365


>gi|156049881|ref|XP_001590907.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154693046|gb|EDN92784.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 576

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 139/380 (36%), Gaps = 72/380 (18%)

Query: 68  EMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHI 122
           E S P  L S  L  E    + +  E+  +    DK     +   PT E VM   +   I
Sbjct: 116 EASFPMFLSSKSLEKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWI 175

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +S+R+LP    Q     R E +     +R+REFL ++ ++  LT E +     ++   Y 
Sbjct: 176 RSHRDLPLRLNQWNSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEELAGEEVLQILEFYA 235

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ +  L ++P                +V     E + F    +         T  +  
Sbjct: 236 GVYEQ--LLAVP----------------VVRGRKTEKEKFAGGYY--------TTTVEGY 269

Query: 243 ISLNSIVEQWTAPYAATSDVHNE---KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           I  N    Q      ATS    +   K+FD   E+      G + GH+            
Sbjct: 270 IPSNGRGIQ-----GATSHCLGQNFSKMFDITVEDP-TPKNGEKAGHL------------ 311

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                      +V   S+G+ + RV+  ++    D KG++ P  +A  +  +I +   ++
Sbjct: 312 -----------HVWQNSWGL-STRVIGVMVMIHGDDKGLVLPPRIAKLQAIIIPVGITNK 359

Query: 360 VCR-------DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFV 411
                     D  + I   L K G    +D   G     +F   +L G PL++  G +  
Sbjct: 360 TTPEEKAKRYDELQSIKDTLKKAGVRADYDIRDGYTPAWKFNDWELKGVPLRLEYGPRDA 419

Query: 412 SDSKVEIKHRLTGIREDMSL 431
           +   V    R TG +  +S+
Sbjct: 420 AQEVVSYARRDTGEKGTISI 439


>gi|297529263|ref|YP_003670538.1| histidyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297252515|gb|ADI25961.1| histidyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 426

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 98/455 (21%), Positives = 167/455 (36%), Gaps = 70/455 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  +G    LP   +    V  I R   +R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDVLPGDTEKWQYVEHIARSLCSRYGYQEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H +    N P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPNQPLKLYYSGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPM---------- 195
           G  R R+F+      F +   GS       ++    + I+  LGLK I +          
Sbjct: 120 G--RFRQFV-----QFGVEALGSSDPAIDAEVMALAMHIYEALGLKRIRLVINSLGDLDS 172

Query: 196 -RAESGPIGGDLSHEFIVLADTGETQVF--------CSKDFMDFPIPSENTDFDDIISLN 246
            RA    +    S     L    +T++         C KD  D  + +      D ++ +
Sbjct: 173 RRAHREALVRHFSSRIHELCPDCQTRLHTNPLRILDCKKD-RDHELMATAPSILDYLNED 231

Query: 247 S-----IVEQWTA----PYAATS------DVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           S      V+Q+      P+   S      D +N   F+ + E +   A     G   Y G
Sbjct: 232 SRAYFEKVKQYLTNLGIPFVIDSRLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYNG 291

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKIS 350
               +          G      +G + +   R++AA+     D +G+  P +S     + 
Sbjct: 292 LVQEI----------GGPETPGIG-FALSIERLLAAL-----DAEGVELPVESGLDCYVV 335

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  +A D+  R     +YA L + G  V  D +G ++ +Q   AD LG     I+G + 
Sbjct: 336 AVGERAKDEAVR----LVYA-LRRFGLRVDQDYLGRKLKAQLKAADRLGASFVAIIGDEE 390

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +   +  +KH  +G + ++ L E+ ++   R    
Sbjct: 391 LERQEAAVKHMASGEQTNVPLGELAHFLHERIGKE 425


>gi|294887331|ref|XP_002772056.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239875994|gb|EER03872.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 596

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
           ++G+G  R++  ++E +   +          +  P  VAP K+S++ I ++    + A  
Sbjct: 442 AFGVG--RIIYTILEHTFRSREMEDQELRCYLSLPPVVAPTKVSVLPISSNPTQFKPAMH 499

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           KI   L + G     DD G+ IG ++A  D +G P  + +  + ++D  V ++ R
Sbjct: 500 KITDALKEHGISYKVDDSGQAIGKRYARTDEIGIPFGITIDFQSLNDDTVTLRER 554


>gi|239614077|gb|EEQ91064.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
 gi|327353430|gb|EGE82287.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 607

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 200 PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTE 259

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
            G++    ++   Y  ++  L
Sbjct: 260 AGAREEVLQILEHYAHVYEDL 280


>gi|225570967|ref|ZP_03779990.1| hypothetical protein CLOHYLEM_07071 [Clostridium hylemonae DSM
           15053]
 gi|225160429|gb|EEG73048.1| hypothetical protein CLOHYLEM_07071 [Clostridium hylemonae DSM
           15053]
          Length = 473

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 16/135 (11%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPD---------SVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA R+V A + S++D + +   D         ++AP K+ ++ +    +   +  EK+Y
Sbjct: 344 LGADRMVLAFLCSAYDEEELEGGDMRTVLHFHPALAPIKVGVLPLS---KKLNEGAEKVY 400

Query: 370 ARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           A+LS K  C+  +DD G  IG ++   D +G P  V    +   D  V ++ R T  +E 
Sbjct: 401 AQLSRKYNCE--FDDRG-NIGKRYRRQDEIGTPFCVTYDFESEEDGAVTVRDRDTMEQER 457

Query: 429 MSLEEVINYASHRFS 443
           + +EE+ +Y + +F 
Sbjct: 458 VKIEELESYFAKKFE 472


>gi|311246798|ref|XP_003122346.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Sus scrofa]
          Length = 801

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 156/411 (37%), Gaps = 47/411 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE ++    E+  P + S+ LW  SG +  Y + 
Sbjct: 414 HDLSPGSCFFLPRGAFIYNALMDFIREEYHQRSFTEVLSPNMYSSKLWEASGHWQHYREN 473

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D +       P +      +F    +S+R +P  F    +  R+EL      +  
Sbjct: 474 MFTF-DVDKDTFALKPMNCPGHCLMFAHRPRSWREMPIRFADFGVLHRNELSETLSSLTH 532

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F  T E  +            ++   G  S  +   + P   D   E +
Sbjct: 533 VRRFQQDDAHIF-CTVEQIEEEIKGCLKFLQSVYSTFGF-SFQLNLSTRP--EDFLGE-V 587

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D  E Q+      ++F  P +    D             A Y    D+   K+ D++
Sbjct: 588 AIWDEAEKQL--QNSLVEFGKPWKMKPGDG------------AFYGPKIDI---KIKDAI 630

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
               + +   ++      F   Y        K  D K + V +    +G++  + A++  
Sbjct: 631 GRYHQCATIQLDFQLPIRFNLTY------VSKEGDDKKNPVIIHRAILGSVERMIAILSE 684

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK------VGCDVFWDDMG 385
           +++GK   WP  ++P ++ +I +         ACEK   ++S          DV  D   
Sbjct: 685 NYEGK---WPFWLSPRQVIVIPVGP-------ACEKYALQVSNEFLEEGFMADVDLDHSC 734

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +  +   A L  +   ++VG K  +++ V ++ R   I  ++S+   I+
Sbjct: 735 -TLNKKIQNAQLAQYNFILVVGEKEKANNAVSVQTRDNKIHGEISVTSAID 784


>gi|261204761|ref|XP_002629594.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239587379|gb|EEQ70022.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 606

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 200 PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTE 259

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
            G++    ++   Y  ++  L
Sbjct: 260 AGAREEVLQILEHYAHVYEDL 280


>gi|213580910|ref|ZP_03362736.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 234

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G +D+Y  
Sbjct: 85  MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD 144

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 145 AMFTTSSENREYCI-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 203

Query: 151 RSREFLMKDAYSF 163
           R R F   DA+ F
Sbjct: 204 RVRGFTQDDAHIF 216


>gi|297817558|ref|XP_002876662.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322500|gb|EFH52921.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 522

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RG++       G  ++      ++    +   V   S+   + R +  +I +  D KG
Sbjct: 257 TGRGVQGATSHCLGQNFAKMFEINYENEKAETAMVWQNSWAY-STRTIGVMIMTHGDDKG 315

Query: 338 IIWPDSVAPFKISLINIK---AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQF 392
           ++ P  VA  ++ +I +    A+ Q   DAC    + L + G     +D+ +    G ++
Sbjct: 316 LVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIRAE-EDLRDNYSPGWKY 374

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +  ++ G PL++ +G + + + +V    R  G++ED+
Sbjct: 375 SDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDI 411


>gi|156354210|ref|XP_001623293.1| predicted protein [Nematostella vectensis]
 gi|156209976|gb|EDO31193.1| predicted protein [Nematostella vectensis]
          Length = 559

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   I+E+  + G  E+  P + S  LW  SG +  Y 
Sbjct: 170 FFHELSPGSCFFLPKGAVIYNTLINFIKEQYWKRGFQEVVSPNIYSTKLWETSGHWQHYS 229

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   ++    P +      +F    +S+R LP       +  R+EL     G+
Sbjct: 230 EHMFSF-EVEKESYALKPMNCPGHCLMFDHRPRSWRELPLRMADFGVLHRNELSGTLSGL 288

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 289 TRVRRFQQDDAHIF 302


>gi|73951031|ref|XP_857184.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 3
           [Canis familiaris]
          Length = 711

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IREE +R    E+  P + ++ LW  SG +  Y + 
Sbjct: 324 HDLSPGSCFFLPRGAFIYNTLMDFIREEYHRRNFTEVLSPNMFNSKLWETSGHWQHYSEN 383

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D         P +      +F    +S+R +P       +  R+EL     G+ R
Sbjct: 384 MFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPVRLADFGVLHRNELSGTLSGLTR 442

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 443 VRRFQQDDAHIF 454


>gi|225424719|ref|XP_002265302.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086530|emb|CBI32119.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G + +LP G +  + +   I+ +    G  E+  PT+ +  LW  SG   +Y 
Sbjct: 305 FCHPLSPGSWFFLPHGGRIYNKLMEFIKAQYRERGYHEVFSPTMYNMQLWETSGHAANY- 363

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE + + +   +     P +      +F   ++SYR LP       +  R+E      G+
Sbjct: 364 KENMFVFEVEKQEFGLKPMNCPGHCLMFEHRVRSYRELPLRLADFGVLHRNEASGALTGL 423

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 424 TRVRRFQQDDAHIF 437


>gi|126277226|ref|XP_001373323.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 806

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   I+EE +R    E+  P + ++ LW  SG +  Y + 
Sbjct: 419 HDLSPGSCFFLPRGAFIYNTLMDFIKEEYHRRNFTEVISPNVYNSKLWETSGHWQHYSEN 478

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D   +     P +      +F    +S+R +P       +  R+EL     G+ R
Sbjct: 479 MFSF-DIEKETFALKPMNCPGHCLMFAHRPRSWREMPIRLADFGVLHRNELSGTLSGLTR 537

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 538 VRRFQQDDAHIF 549


>gi|119191888|ref|XP_001246550.1| hypothetical prolyl-tRNA synthetase [Coccidioides immitis RS]
          Length = 603

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 188 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 247

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT   ++    ++   Y  ++ +L
Sbjct: 248 HTAHLTEAAAREEVLQILQHYAHVYEQL 275


>gi|328861801|gb|EGG10903.1| hypothetical protein MELLADRAFT_74104 [Melampsora larici-populina
           98AG31]
          Length = 488

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 9/139 (6%)

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQV 360
           G   +  +V   S+G+ + R +  ++    D KG++ P  VA  ++ +I +    +  Q 
Sbjct: 229 GVQAEKLFVWQNSWGL-STRTIGVMVMVHGDDKGLVLPPRVAQLQVIVIPVGIVASTTQE 287

Query: 361 CR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            R    D  E++ ARL K G     D   G   G +F   ++ G PL++ +G K +++  
Sbjct: 288 GRKELYDKTEELAARLRKAGVRAKSDLREGYTPGWKFNSWEMKGIPLRLELGPKDLANQT 347

Query: 416 VEIKHRLTGIREDMSLEEV 434
             +  R TGI+   SL+++
Sbjct: 348 TLVVRRDTGIKTPFSLDKL 366



 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 38/81 (46%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+SYR+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 81  PTSETVMYPYYAKWIQSYRDLPLKINQWNSVVRWEFKNPQPFIRTREFLWQEGHTAHLTK 140

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
             +     ++   Y  ++  L
Sbjct: 141 PEADTEVRQILDLYKGVYEEL 161


>gi|326471753|gb|EGD95762.1| threonyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 511

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   + P G   L+ +   +R +  + G  E+  P +    LW  SG + +Y  +M 
Sbjct: 61  YSPGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMY 120

Query: 95  RLADRNDKA--------MIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            +  R D           IYG  P +      +F+S   SYR LP  +       R+E+ 
Sbjct: 121 EVGGRGDTGETSETSENEIYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVS 180

Query: 145 PRF-GVMRSREFLMKDAYSF 163
               G+ R R F   D + F
Sbjct: 181 GSLSGLTRVRRFHQDDGHIF 200


>gi|320036438|gb|EFW18377.1| prolyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 603

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 188 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 247

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT   ++    ++   Y  ++ +L
Sbjct: 248 HTAHLTEAAAREEVLQILQHYAHVYEQL 275


>gi|163846883|ref|YP_001634927.1| prolyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222524704|ref|YP_002569175.1| prolyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|259511578|sp|A9W9Q2|SYP_CHLAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511583|sp|B9LC55|SYP_CHLSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163668172|gb|ABY34538.1| prolyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222448583|gb|ACM52849.1| prolyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 480

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++ G     G  ++     TF   +    Y    S+G+ + R++ A+I +  D +G++
Sbjct: 223 RALQAGTSHNLGQNFARAFDITFTDQNNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLV 281

Query: 340 WPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA 393
            P  +AP ++ ++ I  +D+   +   A E++ A      +   D   D      G +F 
Sbjct: 282 LPPRLAPIQVVVVPIYKNDEERSLVMAAVEQMTAAWKGRLRFKVD---DRDNYSPGYKFN 338

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +L G P+++ VG K V+   V +  R
Sbjct: 339 EWELKGVPVRIEVGPKDVAKETVALARR 366


>gi|165975675|ref|YP_001651268.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|190149490|ref|YP_001968015.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251658|ref|ZP_07337831.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251749|ref|ZP_07533652.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307260677|ref|ZP_07542367.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|307262809|ref|ZP_07544434.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|238687519|sp|B0BSM2|SYT_ACTPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238692375|sp|B3H061|SYT_ACTP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|165875776|gb|ABY68824.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|189914621|gb|ACE60873.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649500|gb|EFL79683.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860750|gb|EFM92760.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306869598|gb|EFN01385.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306871824|gb|EFN03543.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 142/397 (35%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGLVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       D +   + +    ++       I E   A Y    +      
Sbjct: 432 ----AMWDRAE-------DGLAKALTANGLSYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRV 324
            D          R  + G I      ++LP  + A++   D G+   V +    +G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLDASYVAEDNGRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+   LS  G     D  
Sbjct: 521 FIGIITEEYAG---FFPTWLAPTQAVVMNITDSQA---DYVQKVTKALSDAGIRAKSDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 575 NEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTR 611


>gi|324991702|gb|EGC23634.1| serine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 425

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S      M  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELENMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|242033449|ref|XP_002464119.1| hypothetical protein SORBIDRAFT_01g012680 [Sorghum bicolor]
 gi|241917973|gb|EER91117.1| hypothetical protein SORBIDRAFT_01g012680 [Sorghum bicolor]
          Length = 739

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   +LP G +  + +   +R++    G  E+  P + +  LW  SG   +Y KE
Sbjct: 360 HELSPGSCFFLPHGARIYNKLMDFMRQQYRARGYQEVLSPNMYNMQLWETSGHAANY-KE 418

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            + + +   +     P +      +F + ++SYR LP       +  R+EL     G+ R
Sbjct: 419 NMFVFEIEKQEFGLKPMNCPGHCLMFANRVRSYRELPLRMADFGVLHRNELSGALTGLTR 478

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 479 VRRFQQDDAHIF 490


>gi|315634189|ref|ZP_07889478.1| threonine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315477439|gb|EFU68182.1| threonine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +YG 
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYGD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFTNIFVKLSTRPEKRIGAD 431


>gi|154274019|ref|XP_001537861.1| hypothetical protein HCAG_07283 [Ajellomyces capsulatus NAm1]
 gi|150415469|gb|EDN10822.1| hypothetical protein HCAG_07283 [Ajellomyces capsulatus NAm1]
          Length = 551

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 171 PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTE 230

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
            G++    ++   Y  ++  L
Sbjct: 231 GGAREEVLQILEHYAHVYEEL 251


>gi|297835784|ref|XP_002885774.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331614|gb|EFH62033.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 650

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 150/408 (36%), Gaps = 52/408 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G    + +    ++     G   +  P +  ADLW  SG  D Y + M    
Sbjct: 274 GLVFWHPKGAIVRNIIEESWKKMHVEHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQM 333

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  D+     P +      +++   +SYR+LP    ++   +R EL     G+ R R F 
Sbjct: 334 EIEDELYQLRPMNCPYHILLYQRKRQSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFT 393

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+ F L  +  K     +      I  R G     +   + P   +G D        
Sbjct: 394 QDDAHIFCLEDQ-IKDEIRGVLDLTEEILSRFGFNKYEVNLSTRPEKSVGDD-------- 444

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  E      +D +D    S   D           E   A Y    D+   K+ D+L  
Sbjct: 445 -DIWEKATCALRDALDDKGWSYEVD-----------EGGGAFYGPKIDL---KIEDALGR 489

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG---KDHYVQMGSYGIGAMRVVAAVIE 330
             + S   ++          ++LP        D    K   + +    +G++     V+ 
Sbjct: 490 KWQCSTIQVD----------FNLPQRFDITYVDTNSDKKRPIMIHRAVLGSLERFFGVLI 539

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
             + G   +W   ++P ++ ++ +  +  + C++  +K+ A      C V  +   GE++
Sbjct: 540 EHYAGDFPLW---LSPIQVRVLPVTDNQLEFCKEVSKKLRA------CGVRAELCHGERL 590

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                 A+    PL  +VG K V    V ++ R  G    + +++ IN
Sbjct: 591 PKLIRNAETQKIPLMAVVGPKEVETGTVTVRSRFGGELGTIPVDDFIN 638


>gi|307256244|ref|ZP_07538030.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306865263|gb|EFM97160.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 142/397 (35%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGLVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       D +   + +    ++       I E   A Y    +      
Sbjct: 432 ----AMWDRAE-------DGLAKALTANGLSYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRV 324
            D          R  + G I      ++LP  + A++   D G+   V +    +G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLDASYVAEDNGRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+   LS  G     D  
Sbjct: 521 FIGIITEEYAG---FFPTWLAPTQAVVMNITDSQA---DYVQKVTKALSDAGIRAKSDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 575 NEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTR 611


>gi|327401820|ref|YP_004342659.1| threonyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327317328|gb|AEA47944.1| threonyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 615

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 134/330 (40%), Gaps = 57/330 (17%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +Y+NLP   Y++ +  FR E R    G+ R R F M D ++     E +K  +   +   
Sbjct: 299 TYKNLPLRMYELTRYSFRKEQRGELVGLRRLRAFTMPDMHTLTKDMEQAKQEFFNQYKLS 358

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD- 240
           +     +GL+                       +  E  +  +KDF +     EN +F  
Sbjct: 359 VETLKEIGLEP----------------------EDYEVAIRVTKDFYN-----ENKEFVH 391

Query: 241 ---DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D++    +VE W   +            D+L +   +S   I+V +      +Y + 
Sbjct: 392 SLVDVLKKPILVEMWDQRFFYFVLKFEFNFVDALEKASALSTVQIDVEN----AERYDI- 446

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSVAPFKISL 351
              T+    G K+H   +     GA+ R + A++E ++     GK  + P  ++P ++ +
Sbjct: 447 ---TYVNEKGEKEHPFILHCSASGAIERCIYALLEKAYMEKEKGKLPMLPVWLSPTQVRI 503

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +    +   D   ++  +++ V  DV  DD  E +G +   A +   P   +VG   V
Sbjct: 504 IPV---SEKYVDYAIEVAKKMNGVRVDV--DDRDETLGKKIRDASMEWIPYIAVVGENEV 558

Query: 412 SDSKVEIKHRLTGIRED-----MSLEEVIN 436
           ++  + +  R    +++     MS+EE++ 
Sbjct: 559 NEGYLTVTIRSESTQKEQKRVKMSVEELVE 588


>gi|294892656|ref|XP_002774168.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239879385|gb|EER05984.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
           ++G+G  R++  ++E +   +          +  P  VAP K+S++ I ++    + A  
Sbjct: 520 AFGVG--RIIYTILEHTFRSREMEDQELRCYLSLPPVVAPTKVSVLPISSNPTQFKPAMH 577

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           KI   L + G     DD G+ IG ++A  D +G P  + +  + ++D  V ++ R
Sbjct: 578 KITDALKEHGISYKVDDSGQAIGKRYARTDEIGIPFGITIDFQSLNDDTVTLRER 632


>gi|327541683|gb|EGF28207.1| prolyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 501

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           LR A + ++ +I  PT E ++   +   ++SYR+LP    Q     R E+R R   +R+ 
Sbjct: 110 LRPAGKLEEPLIVRPTSETIIGATYAKWVQSYRDLPILINQWANVVRWEMRTRM-FLRTA 168

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           EFL ++ ++   T E +     KM   Y
Sbjct: 169 EFLWQEGHTVHATSEEAVEETEKMVEVY 196


>gi|207343684|gb|EDZ71074.1| YKL194Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 358

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + +   ++ +Q  + G  E+  P +    LW +SG +++Y  +M 
Sbjct: 55  SPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMF 114

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           ++   +++   YG  P +      IF    +SY  LP  F       R+E      G+ R
Sbjct: 115 KVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHS-----------YNKMF 178
            R+F   D + F  TP   K             YNK+F
Sbjct: 175 LRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKIF 211


>gi|189205755|ref|XP_001939212.1| prolyl-tRNA synthetase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975305|gb|EDU41931.1| prolyl-tRNA synthetase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 562

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E  M   F   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 147 EKPIAVRPTSETAMYPYFARKIQSHRDLPLKLNQWNSVVRWEFKHPMPFIRTREFLWQEG 206

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL-------GLKSI 193
           ++  LT E +     ++   Y  +F +L       G+K+I
Sbjct: 207 HTAHLTREEASAEVLQILDWYSDVFQKLLAVPVVKGMKTI 246


>gi|296284112|ref|ZP_06862110.1| prolyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 533

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ D     ++S+R+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 137 EEPLVVRPTSETIIGDAMARWVQSWRDLPLKLNQWANVVRWEMRTRM-FLRTSEFLWQEG 195

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   TPE +K     M   Y
Sbjct: 196 HTAHATPEEAKDHTLTMLEVY 216



 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/98 (19%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      ++  +G + +    S+G+ + R++  +I +  D  G+
Sbjct: 255 GKALQAGTSHYLGTNFAKASGIKYQAQEGGEQFAHTTSWGV-STRLIGGIIMTHGDDDGL 313

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLS 373
             P  +AP+++ ++ +      D    + CE + A L+
Sbjct: 314 RVPPKLAPWQVVILPMLRGNDDDAALIEYCEGLRATLA 351


>gi|296089916|emb|CBI39735.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G + +LP G +  + +   I+ +    G  E+  PT+ +  LW  SG   +Y 
Sbjct: 305 FCHPLSPGSWFFLPHGGRIYNKLMEFIKAQYRERGYHEVFSPTMYNMQLWETSGHAANY- 363

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           KE + + +   +     P +      +F   ++SYR LP       +  R+E      G+
Sbjct: 364 KENMFVFEVEKQEFGLKPMNCPGHCLMFEHRVRSYRELPLRLADFGVLHRNEASGALTGL 423

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 424 TRVRRFQQDDAHIF 437


>gi|322706591|gb|EFY98171.1| prolyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 556

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 7/173 (4%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADL 79
            +++L+  M+  + +  G +   PL       +           G  E S P  L    L
Sbjct: 62  QEVVLKAEMVEYYHEISGFFVLRPLSMHIWSTIRKWFSGHIEELGVEEASFPLFLSKTSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    D +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q 
Sbjct: 122 DKEKDHVDGFAPELAWVERAGDKKLDVPVAIRPTSEAVMYPYYAKWIRSHRDLPLRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L
Sbjct: 182 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEQL 234


>gi|258578341|ref|XP_002543352.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237903618|gb|EEP78019.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 19/145 (13%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   + P G   L+ + A +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 201 YSPGSPLFQPNGTHILNKLLAFLRAQYRQYGFQEVLTPTIYKKSLWELSGHWQNYKDDMY 260

Query: 95  RLADRNDKAMIYGPTHEEVMTD---------------IFRSHIKSYRNLPFTFYQIQLKF 139
            +  R         TH E+  D               +F+S   SYR+LP  +       
Sbjct: 261 EVRGRGATGET---THGEIGEDESYGLKPMNCPGHCLLFKSQKWSYRDLPVRYADFSPLH 317

Query: 140 RDELRPRF-GVMRSREFLMKDAYSF 163
           R+E+     G+ R R F   D + F
Sbjct: 318 RNEVSGSLSGLTRVRRFHQDDGHIF 342


>gi|288574387|ref|ZP_06392744.1| prolyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570128|gb|EFC91685.1| prolyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 480

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRL----AD 98
           P G    + +  +       TG +    P L  S+ L  E+   + +  E   +     +
Sbjct: 39  PTGYSVWEEIQQVFDRAFKETGHVNAYFPVLIPSSFLEKEAEHVEGFSPECAVVTHAGGE 98

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E V+  ++   I+S+R+LP    Q     R E RPR   +R+ EFL +
Sbjct: 99  ELEEPLVVRPTSETVIGHMYSKWIQSWRDLPLLINQWANVMRWEKRPRL-FLRTSEFLWQ 157

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIF-HRLGLKSIP 194
           + ++   + E +     +M   Y RI    L L  +P
Sbjct: 158 EGHTAHASKEEAIEETERMLEVYRRIMTDYLALPVVP 194



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  +S   +  F+       Y    S+G+ + R++ AVI +  D  G+I
Sbjct: 220 KALQAGTSHFLGQNFSKAFNIQFQNKKEAMEYAWTTSWGV-STRLIGAVIMTHSDDDGLI 278

Query: 340 WPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCD---VFWDDMGEQIGSQF 392
            P  +AP K++L+ I   + +          ++  ++  V  D   V  D    + G +F
Sbjct: 279 LPPRIAPTKVALLPISKDETMATGPLLSKARELAGKIESVIGDRTIVVDDQFHMRPGDRF 338

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                 G PL++ +G K      V    R TG + D+
Sbjct: 339 FYHLQKGVPLRLELGEKEFEKGTVRAVRRDTGEKIDL 375


>gi|121716703|ref|XP_001275886.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119404043|gb|EAW14460.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 608

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 184 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG 243

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT   ++     +   Y RI+  L
Sbjct: 244 HTAHLTEGAAREEVLHILDLYARIYEEL 271


>gi|332357990|gb|EGJ35823.1| serine--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 425

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + +    +G+Y  + ++   L+D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHNSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALCTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|291402378|ref|XP_002717441.1| PREDICTED: glutamyl-prolyl tRNA synthetase [Oryctolagus cuniculus]
          Length = 1460

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 124/339 (36%), Gaps = 77/339 (22%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ +S   T 
Sbjct: 1068 PTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATF 1127

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            E +     ++   Y R++    L +IP                +V     E + F   D+
Sbjct: 1128 EEAAEEVLQILDLYARVYEE--LLAIP----------------VVKGRKTEKEKFAGGDY 1169

Query: 228  MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     T  +  IS                                 S R I+ G  
Sbjct: 1170 --------TTTIEAFIS--------------------------------ASGRAIQGGTS 1189

Query: 288  FYFGTKYSLPMSATFK--GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
             + G  +S      F+     G+  +    S+G+   R +  +I    D  G++ P  VA
Sbjct: 1190 HHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGL-TTRTIGVMIMVHGDNMGLVLPPRVA 1248

Query: 346  PFKISLINIKAHDQV-----------CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              ++ +I     + +           C D C ++ +   +V  D+  D+     G +F  
Sbjct: 1249 SVQVVVIPCGITNALSEEDKEALIAKCNDYCRRLLSVSIRVRADLR-DNYSP--GWKFNH 1305

Query: 395  ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             +L G P+++ VG + + + +     R TG  E +++ E
Sbjct: 1306 WELKGVPIRLEVGPRDMKNCQFVAVRRDTG--EKLTIAE 1342


>gi|253989346|ref|YP_003040702.1| threonyl-tRNA synthetase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780796|emb|CAQ83958.1| threonyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 642

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 70/171 (40%), Gaps = 3/171 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    +W  +G +++Y +
Sbjct: 256 MQEEAPGMAFWHNDGWTIFRELETFVRTKLKEYQYQEVKGPFMMDRVMWERTGHWENYNE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCV-KPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           R R F   DA+ F    +  +   N + + Y  ++   G + I ++  + P
Sbjct: 375 RVRGFTQDDAHIFCTEEQIHREVSNCIKMVY-DVYSTFGFEKIVVKLSTRP 424


>gi|294101094|ref|YP_003552952.1| YbaK/prolyl-tRNA synthetase associated region [Aminobacterium
           colombiense DSM 12261]
 gi|293616074|gb|ADE56228.1| YbaK/prolyl-tRNA synthetase associated region [Aminobacterium
           colombiense DSM 12261]
          Length = 509

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +APF + +I     D+   +    +Y  +   G    +DD  E+ G++FA  +L G
Sbjct: 403 YPLGLAPFDVDIIVPSIKDETAMELATNLYHEMVHQGVVALFDDRNERAGAKFADFELFG 462

Query: 400 FPLQVIVGSKFVSDSKVEIKH 420
            P +V+VG K  ++  VE+++
Sbjct: 463 IPAKVVVGRK-AAEGIVEVQY 482


>gi|315043510|ref|XP_003171131.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311344920|gb|EFR04123.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 523

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   + P G   L+ + + +R +  + G  E+  P +    LW  SG + +Y  +M 
Sbjct: 76  YSPGSPLFRPNGTHILNKLISFLRAQYRQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMY 135

Query: 95  RLADRNDKA-----MIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            +  R D         YG  P +      +F+S   SYR LP  +       R+E+    
Sbjct: 136 EVGGRGDTGDSTENETYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVSGSL 195

Query: 148 -GVMRSREFLMKDAYSF 163
            G+ R R F   D + F
Sbjct: 196 SGLTRVRRFHQDDGHIF 212


>gi|302499120|ref|XP_003011556.1| hypothetical protein ARB_02109 [Arthroderma benhamiae CBS 112371]
 gi|291175108|gb|EFE30916.1| hypothetical protein ARB_02109 [Arthroderma benhamiae CBS 112371]
          Length = 533

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 11/131 (8%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G   L+ +   +R +  + G  E+  P +    LW  SG + +Y  +M  +  R D  
Sbjct: 92  PNGTHILNKLITFLRAQYKQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMYEVGGRGDTG 151

Query: 104 --------MIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                    IYG  P +      +F+S   SYR LP  +       R+E+     G+ R 
Sbjct: 152 EASETSENEIYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVSGSLSGLTRV 211

Query: 153 REFLMKDAYSF 163
           R F   D + F
Sbjct: 212 RRFHQDDGHIF 222


>gi|145534462|ref|XP_001452975.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420675|emb|CAK85578.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1348

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + HQ S G   + P G    + +   +R +    G  E+  P + +A LW  SG YD Y 
Sbjct: 341 LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRGYQEVISPNIFNAQLWKISGHYDKYK 400

Query: 91  KEM--LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           + +  + + +  +  +  +  P H  +M D+ +    SYR+LP  F    +  R+E+   
Sbjct: 401 ENLFFINMGEEGEYGLKPMNCPGH-CLMFDMIQH---SYRDLPVRFADFGVLHRNEVHGA 456

Query: 147 F-GVMRSREFLMKDAYSF 163
             G+ R R F   DA+ F
Sbjct: 457 LSGLTRVRRFQQDDAHIF 474


>gi|315046950|ref|XP_003172850.1| bifunctional aminoacyl-tRNA synthetase [Arthroderma gypseum CBS
           118893]
 gi|311343236|gb|EFR02439.1| bifunctional aminoacyl-tRNA synthetase [Arthroderma gypseum CBS
           118893]
          Length = 604

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 185 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 244

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E +     ++   Y  ++  L
Sbjct: 245 HTAHLTKEEAHEEVLQILQHYAHVYEEL 272


>gi|302653826|ref|XP_003018730.1| hypothetical protein TRV_07235 [Trichophyton verrucosum HKI 0517]
 gi|291182401|gb|EFE38085.1| hypothetical protein TRV_07235 [Trichophyton verrucosum HKI 0517]
          Length = 533

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 11/131 (8%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G   L+ +   +R +  + G  E+  P +    LW  SG + +Y  +M  +  R D  
Sbjct: 92  PNGTHILNKLITFLRAQYKQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMYEVGGRGDTG 151

Query: 104 --------MIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                    IYG  P +      +F+S   SYR LP  +       R+E+     G+ R 
Sbjct: 152 ETSDTSENEIYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVSGSLSGLTRV 211

Query: 153 REFLMKDAYSF 163
           R F   D + F
Sbjct: 212 RRFHQDDGHIF 222


>gi|145511255|ref|XP_001441555.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408805|emb|CAK74158.1| unnamed protein product [Paramecium tetraurelia]
          Length = 937

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + HQ S G   + P G    + +   +R +    G  E+  P + +A LW  SG YD Y 
Sbjct: 342 LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRGYQEVISPNIFNAQLWKISGHYDKYK 401

Query: 91  KEM--LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           + +  + + +  +  +  +  P H  +M D+ +    SYR+LP  F    +  R+E+   
Sbjct: 402 ENLFFINMGEEGEYGLKPMNCPGH-CLMFDMVQH---SYRDLPIRFADFGVLHRNEVHGA 457

Query: 147 F-GVMRSREFLMKDAYSF 163
             G+ R R F   DA+ F
Sbjct: 458 LTGLTRVRRFQQDDAHIF 475


>gi|83319726|ref|YP_424209.1| threonyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283612|gb|ABC01544.1| threonyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 81/423 (19%), Positives = 178/423 (42%), Gaps = 54/423 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G    + +   +R+++     I +  P + + +L+  SG +D YG++M +  
Sbjct: 257 GLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIGTVELYKTSGHWDHYGEDMFQPF 316

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                +D+  I  P +      +++   +SYR+LP    +  ++ R E      G+ R R
Sbjct: 317 NGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRICEHAIQHRFESSGSLTGLERVR 376

Query: 154 EFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHE 209
              + D++ F   D   +  + +Y K+    L+ F+ ++   S+ +R  +  +     ++
Sbjct: 377 GMKLTDSHIFVRSDQIEDEFRSTY-KLISEVLKTFNIQIDYLSLSLRDPNDKVK---FYK 432

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             ++ D  E+ +   K  +D  +  E    D             A Y    D+  +    
Sbjct: 433 DDLMWDKAESSL--EKVLIDLGLKYEKRIGD------------AAFYGPKLDIQIKT--- 475

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK------DHYVQMGSYGIGAMR 323
              +N  ++   I++   F    K+ L    T+   D K       H   +G+Y     R
Sbjct: 476 --AQNHEITVSTIQLD--FLMPNKFDL----TYIDKDQKLVRPIMIHRGLIGTYE----R 523

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +A ++E +   KG++ P  +AP ++ +I I   +    +    I+ +L K       D 
Sbjct: 524 FIATLLEQT---KGVL-PLWLAPKQVEIIPISESN---LEYANLIHQKLKKEFIRSHIDL 576

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E++  +   A     P Q+++G+K V ++ +  +   +  +  +S++E I+    + +
Sbjct: 577 RDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVSIQEFIDMLKQQIN 636

Query: 444 NNR 446
           + +
Sbjct: 637 DKK 639


>gi|302916831|ref|XP_003052226.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733165|gb|EEU46513.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 663

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-- 311
           A   ATS    E+L   L E   +S     VG       K S+ +    +  + ++    
Sbjct: 440 AALNATSQEQREQLAKELSETGSISIEVAGVGDGKAKIGKESIAIEFRKRVENTREFVPN 499

Query: 312 VQMGSYGIGAMRVVAAVIESS---------HDGKGII-WPDSVAPFKISLINIKAHDQVC 361
           V   S+GIG  R++ +++E S          + +G++ +P +VAP K+ L+ + ++ Q  
Sbjct: 500 VIEPSFGIG--RILYSLMEHSFWTRASDGGDEARGVLSFPPTVAPTKVLLVPLSSNPQF- 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   +++  RL   G     DD    IG +++  D LG PL + +  + V D  V ++ R
Sbjct: 557 KPLLKQLSQRLRTAGISSRVDDSSASIGKRYSRNDELGTPLGITIDFQTVQDGTVTLRDR 616



 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
            +PF    I   +R+E+ PR G++R REFLM +   F     G KHS
Sbjct: 239 QMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHFVDPQGGKKHS 285


>gi|303313271|ref|XP_003066647.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106309|gb|EER24502.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 603

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 188 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEG 247

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT   ++    ++   Y  ++ +L
Sbjct: 248 HTAHLTEAAAREEVLQILQHYAHVYEQL 275


>gi|219851588|ref|YP_002466020.1| prolyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219545847|gb|ACL16297.1| prolyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 479

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 76/388 (19%), Positives = 150/388 (38%), Gaps = 70/388 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+Y W P G        AI+R+  ++     +    +   +   E+     + +E+  +
Sbjct: 37  KGVYVWFPFGFSIRKLTYAILRQLLDKDHQETLFPLLIPEQEFMKEAEHIKGFEEEVYWV 96

Query: 97  ADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   D  +   PT E  +  ++   ++S+ +LP   YQI   FR E +    ++R 
Sbjct: 97  THGGLTELDVKLALRPTSETAIYPMYALWVRSHADLPLKLYQIVNTFRYETKHTRPLIRL 156

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE    K+A++   T + +          Y   +  L    +P+     P          
Sbjct: 157 REITSFKEAHTVHATWDEAAAQVEDALALYTTFYQHL---CVPILISRRP---------- 203

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                         ++  FP        D  ++++++                      +
Sbjct: 204 --------------EWDKFP------GADYTMAVDTV----------------------M 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+ K +     ++G + + G  +S     T++  +G+        YGI + R +AA+I  
Sbjct: 222 PDGKTL-----QIGTVHHLGDHFSRTFDITYENQNGEQQLAYQTCYGI-SERCIAALISM 275

Query: 332 SHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             D KG+I P  VAP ++ ++ I   K  D+V   A   I  +L   G  V  D+   + 
Sbjct: 276 HGDDKGLILPPEVAPVQVVVVPIIVGKRRDEVLA-AARTIRDQLEAAGLRVKLDEREIRP 334

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           G+++   ++ G PL+V +G + + +  V
Sbjct: 335 GAKYYHWEMRGVPLRVELGPRDLDNGVV 362


>gi|291320191|ref|YP_003515452.1| glycyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752523|emb|CBH40495.1| Glycyl tRNA synthetase (Glycine tRNA ligase) [Mycoplasma
           agalactiae]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P++VAP+K +++ +        +  E+IY +L K+   + +DD G  IG ++   D +G 
Sbjct: 360 PNAVAPYKFAILPLVKK---LNEKAEEIYKQLLKLNIPITYDDAG-SIGKRYRRQDSIGT 415

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           P  + +    ++D  + I++R +  +E +S+  +  +A   F
Sbjct: 416 PYCITIDYDSLNDECITIRNRDSMSQERISISSLYEFAQKTF 457


>gi|269956954|ref|YP_003326743.1| glycyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305635|gb|ACZ31185.1| glycyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 466

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 121/318 (38%), Gaps = 47/318 (14%)

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR- 187
           PF   QI   FR+E+ P   + R+REF   +   F + P G+   +++ ++     ++  
Sbjct: 189 PFGIAQIGKSFRNEITPGNFIFRTREFEQME-MEFFVKP-GTDAEWHQYWIDQRTAWYTD 246

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           LG+    +R    P    LSH      D      F   ++ +    +  TDFD    L +
Sbjct: 247 LGIDPENLRHYEHP-AEKLSHYSTRTVDIEYRFGFQGSEWGELEGIANRTDFD----LKT 301

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             E           V NEK F  + E     A G+    + +    Y    +   KG   
Sbjct: 302 HTEHSGKDLGYRDPVTNEKYFPYVIE----PAAGLTRSLMAFLVEAYDEDEAPNTKGGVD 357

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   + +                             +AP K +++ +     +   A EK
Sbjct: 358 KRTVLHLDP--------------------------RLAPVKAAVLPLSKSTDLLPTA-EK 390

Query: 368 IYARLSKVGCDVFWD---DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + A L +      W+   D+ + IG ++   D +G P  V V    + D  V I+HR T 
Sbjct: 391 LAAELRQ-----HWNVDYDVTQAIGKRYRRQDEIGTPFCVTVDFDTLDDQAVTIRHRDTM 445

Query: 425 IREDMSLEEVINYASHRF 442
            +E ++L++V +Y + R 
Sbjct: 446 AQERVALDQVASYLAARL 463


>gi|307249432|ref|ZP_07531421.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858506|gb|EFM90573.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 142/397 (35%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       D +   + +    ++       I E   A Y    +      
Sbjct: 432 ----AMWDRAE-------DGLAKALTANGLSYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRV 324
            D          R  + G I      ++LP  + A++   D G+   V +    +G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLDASYVAEDNGRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+   LS  G     D  
Sbjct: 521 FIGIITEEYAG---FFPTWLAPTQAVVMNITDSQA---DYVQKVTKALSDAGIRAKSDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 575 NEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTR 611


>gi|154311325|ref|XP_001554992.1| hypothetical protein BC1G_06515 [Botryotinia fuckeliana B05.10]
 gi|150850912|gb|EDN26105.1| hypothetical protein BC1G_06515 [Botryotinia fuckeliana B05.10]
          Length = 665

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 13/116 (11%)

Query: 316 SYGIGAMRVVAAVIESSH---------DGKGII-WPDSVAPFKISLINIKAHDQVCRDAC 365
           S+GIG  R++ A++E ++         + +G++ +P  VAP K+ L+ + +H+   +   
Sbjct: 506 SFGIG--RILYALMEHNYWTRGSEGGDEARGVLSFPPIVAPTKVLLVPLSSHESF-KPFL 562

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++I  +L  +G     DD    IG +++  D LG PL + V  + V+DS   ++ R
Sbjct: 563 KQISYKLRSMGVSSRIDDSSASIGKRYSRNDELGTPLGITVDFQSVNDSTFTLRDR 618



 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           + +PF    I   +R+E+ PR G++R REFLM +   F + PEG K
Sbjct: 240 QQMPFASASIGKSYRNEISPRGGLLRVREFLMAEIEHF-VDPEGGK 284


>gi|326533164|dbj|BAJ93554.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 96/453 (21%), Positives = 182/453 (40%), Gaps = 59/453 (13%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +L +++E    A+   H+L+ ++  +   H  S G   +LP G    + +   +R
Sbjct: 302 KRLKEYLHMIEE----AKKRDHRLLGQSQELFFFHPLSPGSCFFLPNGAIIYNKLMDFLR 357

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E    G  E+  P + +  LW  SG   +Y   M  + +   +     P +      +F
Sbjct: 358 KEYRERGYREVLSPNIYNMQLWETSGHAANYKDNMF-VFEIEKQEFGLKPMNCPGHCLMF 416

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F  T    K      
Sbjct: 417 GHKVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTESQIKDEVGAC 475

Query: 178 --FVSYL-RIF---HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             F+ Y+ +IF   + L L + P +       GD     I   +  E Q+  ++   +F 
Sbjct: 476 LEFIDYVYKIFGFQYELELSTRPEK-----YLGD-----IETWNKAEQQL--TEALNEFG 523

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P +  + D             A Y    D+    +FD+L    + +   ++      F 
Sbjct: 524 KPWKINEADG------------AFYGPKIDI---GVFDALKRKFQCATLQLDFQLPLRFK 568

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
             YS    A        +  V +    +G++  + A++   ++GK   WP  ++P +  +
Sbjct: 569 LTYSAEDEAKL------ERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIV 619

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             + ++        ++++A++   G  V  D     I  +   A L  F   ++VG+K  
Sbjct: 620 CCVSSNSLA---YAKEVHAQIHAAGFHVDIDMTDRTIQKKVREAQLAQFNYILVVGAKEA 676

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              KV ++ R    + D+S E + +  + RFS+
Sbjct: 677 ESGKVVLRVR---DKADLSTESIADVIA-RFSD 705


>gi|67523387|ref|XP_659754.1| hypothetical protein AN2150.2 [Aspergillus nidulans FGSC A4]
 gi|40745038|gb|EAA64194.1| hypothetical protein AN2150.2 [Aspergillus nidulans FGSC A4]
 gi|259487529|tpe|CBF86275.1| TPA: prolyl-tRNA synthetase (AFU_orthologue; AFUA_2G16010)
           [Aspergillus nidulans FGSC A4]
          Length = 594

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 5/156 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G Y   P      + +     +   + G    S P   S D L  E    + +  E+  +
Sbjct: 111 GCYILKPASYSIWEEIQQWFNQRIKKIGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAWV 170

Query: 97  ADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+
Sbjct: 171 THAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRT 230

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           REFL ++ ++  LT E +      +   Y +I+  L
Sbjct: 231 REFLWQEGHTAHLTKEAAHEEVMYILDLYAQIYEEL 266


>gi|240277283|gb|EER40792.1| glycyl-tRNA synthetase [Ajellomyces capsulatus H143]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++A ++E  +      + +G++ +P  VAP K+ L+ +  H    +    ++
Sbjct: 504 SFGIG--RILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPLSNHPSF-QPLIHRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 561 TLKLRRLGVSNKVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRERDTTKQVR 620

Query: 429 MSLEEV 434
            S EE+
Sbjct: 621 ASEEEI 626



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K     H    + +S
Sbjct: 238 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHPRFHEVQDLELS 296

Query: 181 YL 182
           +L
Sbjct: 297 FL 298


>gi|237736526|ref|ZP_04567007.1| threonyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229421568|gb|EEO36615.1| threonyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 638

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L +L+E    AE   H+ +   L    + ++  G   +LP G    + +  + +
Sbjct: 226 KKLKDYLTLLEE----AEKRDHRKLGKELDLFFVSEYGPGFPIFLPKGMAIRNTLINLWK 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E    G  E+  P + + +LW  SG + +Y +E +  +  ++      P +       +
Sbjct: 282 REHTLAGYTEIMTPIMLNKELWETSGHWYNY-RENMYTSTIDETEFAIKPMNCPGGIIAY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           +  + SY++LP    ++    R E      G+MR R F   DA+ F +TPE
Sbjct: 341 KYQLHSYKDLPIRCGELGTVHRHEFSGALHGLMRVRCFTQDDAHIF-MTPE 390



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 23/165 (13%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG 337
           +G  +  GT    ++LP     ++ G DG+ H  V +     G++     ++   + G  
Sbjct: 473 IGRTWQCGTIQLDFNLPERFDISYIGEDGEKHRPVMIHRVVYGSIERFIGILIEHYAGAF 532

Query: 338 IIWPDSVAPFKISLINIKAH-----DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +W   +AP ++ ++ I        +++CR   E+        G     DD  E IG + 
Sbjct: 533 PLW---LAPTQVKVLTINDETKPYAEEICRTLLER--------GIRAELDDRAESIGYKI 581

Query: 393 AVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             A+     P+Q+I+G   V + +V I+ R +  +  M L+E ++
Sbjct: 582 REANGKYKVPVQLIIGKNEVENREVNIRRRGSQEQTSMKLDEFLD 626


>gi|32473557|ref|NP_866551.1| prolyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|81658286|sp|Q7UGJ7|SYP_RHOBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32398237|emb|CAD78332.1| prolyl tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 506

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           LR A + ++ +I  PT E ++   +   ++SYR+LP    Q     R E+R R   +R+ 
Sbjct: 115 LRPAGKLEEPLIVRPTSETIIGATYAKWVQSYRDLPILINQWANVVRWEMRTRM-FLRTA 173

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           EFL ++ ++   T E +     KM   Y
Sbjct: 174 EFLWQEGHTVHATSEEAVEETEKMVEVY 201


>gi|295664016|ref|XP_002792560.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226278674|gb|EEH34240.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 559

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   L+ + + +R +  + G  E+  P++    LW  SG + +Y  +M 
Sbjct: 90  YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFREVLTPSIYKKSLWEVSGHWQNYKDDMY 149

Query: 95  RLADRN------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            +  R             D++    P +      +F+S   SYR LP  +       R+E
Sbjct: 150 EVRGRGASGETAEGEIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHRNE 209

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
           +     G+ R R F   D + F
Sbjct: 210 ISGSLSGLTRVRRFHQDDGHIF 231


>gi|325091800|gb|EGC45110.1| glycyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++A ++E  +      + +G++ +P  VAP K+ L+ +  H    +    ++
Sbjct: 504 SFGIG--RILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPLSNHPSF-QPLIHRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 561 TLKLRRLGVSNKVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRERDTTKQVR 620

Query: 429 MSLEEV 434
            S EE+
Sbjct: 621 ASEEEI 626



 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K     H    + +S
Sbjct: 238 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHPRFHEVQDLELS 296

Query: 181 YL 182
           +L
Sbjct: 297 FL 298


>gi|87303299|ref|ZP_01086092.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
 gi|87282194|gb|EAQ74155.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
          Length = 603

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 150/397 (37%), Gaps = 53/397 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    R+     G   +  P +    LW  SG  D Y + M    
Sbjct: 216 GLVFWHPRGARMRLLIEDFWRQAHFAAGYDLLYTPHVADLSLWKTSGHLDFYSESMFGPM 275

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF--GVMRSREF 155
             +++     P +       + S ++SYR LP  + ++   +R E RP    G+MR R F
Sbjct: 276 QVDERQYQLKPMNCPFHVLTYASTLRSYRELPIRWAELGTVYRYE-RPGVMHGLMRVRGF 334

Query: 156 LMKDAYSFDLTPE-------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
              DA+ F L PE       G  +    +  S+    + + L + P ++    IG D   
Sbjct: 335 TQDDAHIFCL-PEQIGDEILGVLNLTETILSSFDFHTYEVNLSTRPEKS----IGDD--- 386

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
               + D   T +  + D   +P                I E   A Y    D+   K+ 
Sbjct: 387 ---AVWDLATTGLIEALDRKGWPY--------------KIDEGGGAFYGPKIDI---KIE 426

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
           D++    + S   ++    F    ++ L     +  ADG      M    I G++     
Sbjct: 427 DAIGRMWQCSTIQLD----FNLPERFDL----HYVAADGSRQRPIMIHRAIFGSLERFFG 478

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++  ++ G    W   +AP ++ L+ +   D+V   A E++  +L   G     D  G++
Sbjct: 479 IMVENYAGDFPFW---LAPEQVRLLPVT--DEVIPYA-EEVLGQLRSAGVRAAIDRSGDR 532

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G      +    P+  ++G+K      V ++ R  G
Sbjct: 533 LGKLIRHGEQQKIPVLAVIGAKEAEQGSVSLRSRRDG 569


>gi|225677700|gb|EEH15984.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 559

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   L+ + + +R +  + G  E+  P++    LW  SG + +Y  +M 
Sbjct: 90  YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFREVLTPSIYKKSLWEVSGHWQNYKDDMY 149

Query: 95  RLADRN------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            +  R             D++    P +      +F+S   SYR LP  +       R+E
Sbjct: 150 EVRGRGASGETAKGEIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHRNE 209

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
           +     G+ R R F   D + F
Sbjct: 210 ISGSLSGLTRVRRFHQDDGHIF 231


>gi|225562196|gb|EEH10476.1| glycyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++A ++E  +      + +G++ +P  VAP K+ L+ +  H    +    ++
Sbjct: 504 SFGIG--RILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPLSNHPSF-QPLIHRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 561 TLKLRRLGVSNKVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRERDTTKQVR 620

Query: 429 MSLEEV 434
            S EE+
Sbjct: 621 ASEEEI 626



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K     H    + +S
Sbjct: 238 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHPRFHEVQDLELS 296

Query: 181 YL 182
           +L
Sbjct: 297 FL 298


>gi|154284101|ref|XP_001542846.1| glycyl-tRNA synthetase 1 [Ajellomyces capsulatus NAm1]
 gi|150411026|gb|EDN06414.1| glycyl-tRNA synthetase 1 [Ajellomyces capsulatus NAm1]
          Length = 582

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++A ++E       + + +G++ +P  VAP K+ L+ +  H    +    ++
Sbjct: 430 SFGIG--RILACLMEHVYWSRPNDEARGVLSFPPIVAPTKVLLVPLSNHPSF-QPLIHRL 486

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 487 TLKLRRLGVSNKVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRERDTTKQVR 546

Query: 429 MSLEEV 434
            S EE+
Sbjct: 547 ASEEEI 552



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMF 178
           + +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K     H    + 
Sbjct: 162 NQQSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHPRFHEVQDLE 220

Query: 179 VSYL 182
           +S+L
Sbjct: 221 LSFL 224


>gi|226295138|gb|EEH50558.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 559

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   L+ + + +R +  + G  E+  P++    LW  SG + +Y  +M 
Sbjct: 90  YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFREVLTPSIYKKSLWEVSGHWQNYKDDMY 149

Query: 95  RLADRN------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            +  R             D++    P +      +F+S   SYR LP  +       R+E
Sbjct: 150 EVRGRGASGETAKGEIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHRNE 209

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
           +     G+ R R F   D + F
Sbjct: 210 ISGSLSGLTRVRRFHQDDGHIF 231


>gi|145529349|ref|XP_001450463.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418074|emb|CAK83066.1| unnamed protein product [Paramecium tetraurelia]
          Length = 930

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + HQ S G   + P G    + +   +R +    G  E+  P + +A LW  SG YD Y 
Sbjct: 341 LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRGYQEVISPNIFNAQLWKISGHYDKYK 400

Query: 91  KEM--LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           + +  + + +  +  +  +  P H  +M D+ +    SYR+LP  F    +  R+E+   
Sbjct: 401 ENLFFINMGEEGEYGLKPMNCPGH-CLMFDMIQH---SYRDLPVRFADFGVLHRNEVHGA 456

Query: 147 F-GVMRSREFLMKDAYSF 163
             G+ R R F   DA+ F
Sbjct: 457 LSGLTRVRRFQQDDAHIF 474


>gi|19074055|ref|NP_584661.1| PROLYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74621295|sp|Q8SSD7|SYP_ENCCU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19068697|emb|CAD25165.1| PROLYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 520

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 5/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           KG Y   PLGQ     ++    ++    G  E   P L   + L +E    +++  E+  
Sbjct: 55  KGCYVMRPLGQFVWKCIHKWFTKKIEELGVQECYFPMLVPKSMLEMEKDHVENFSPEVAW 114

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    ++ +       PT E ++   F   I+S+R+LP    Q     R EL      +R
Sbjct: 115 ITKCGNQVLEDPVAVRPTSETIIYPSFSKWIRSHRDLPLKLNQWCSVLRWELHGTLPFIR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
            +EFL ++ ++  LT + S      +   Y +I+  L
Sbjct: 175 GKEFLWQEGHTAFLTRKESDEEVLAILDLYSQIYSEL 211


>gi|290985788|ref|XP_002675607.1| Glycyl-tRNA synthetase [Naegleria gruberi]
 gi|284089204|gb|EFC42863.1| Glycyl-tRNA synthetase [Naegleria gruberi]
          Length = 650

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 341 PDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           P ++AP+K++L+ IKA  DQ+ +    K+   L++ G     D   + IG ++A AD +G
Sbjct: 522 PPAIAPYKVALLPIKADQDQIVK----KLQQSLARYGISHRVDAGNQNIGKKYARADDIG 577

Query: 400 FPLQVIVGSKFVSDSKVEIKHR 421
            P  + +    V+   V I+ R
Sbjct: 578 IPFAITIDDNSVTAGTVTIRER 599



 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + +PF   QI   FR+E+ PR G++R REF + +   F L P+  +H
Sbjct: 221 KQMPFASAQIGQAFRNEISPRSGLLRVREFTLAEIEHF-LNPDVDEH 266


>gi|326936120|ref|XP_003214106.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial-like, partial
           [Meleagris gallopavo]
          Length = 550

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 142/408 (34%), Gaps = 61/408 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  S G   +LP G    + +   IR E    G  E+  P + S  LW  SG +  Y  
Sbjct: 184 FHALSPGSCFFLPRGAHIYNTLIDFIRSEYQARGFSEVVTPNIFSPRLWELSGHWQHYSA 243

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M        + +   P +      +F    +S+R LP       +  R+E      G+ 
Sbjct: 244 HMFSFTA-GTETLSLKPMNCPAHCLMFAHRPRSWRELPLRLADFGVLHRNEPPGSLTGLT 302

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSH 208
           R R F   DA+ F    E  +            I+  LG  S  M   + P G  GD + 
Sbjct: 303 RVRRFQQDDAHIF-CALEQLEAEIGACLDFVRSIYATLGF-SFQMALATRPDGFLGDAA- 359

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 D  E Q+   K   DF  P E +  D             A Y    D+   ++ 
Sbjct: 360 ----TWDRAEQQL--EKSLQDFGEPWELSQGDG------------AFYGPKIDI---RIQ 398

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D+L  + +     ++      FG +Y+         A G    V +    +G++  + AV
Sbjct: 399 DALGRHHQCGTIQLDFQMPERFGLEYA-------SAAGGTARPVLIHRAVLGSVERMVAV 451

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +  S  GK   W  SV            H  + RD    + A L          D G  +
Sbjct: 452 MAESCGGK---WGTSV------------HAMLRRDG---VMADLDA--------DAGATL 485

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G +   A L  +  Q++VG +      V ++ R      + SL +V+ 
Sbjct: 486 GRKIRRAQLTHYNFQLVVGRREQEHGTVSVRTRDNRQLGEHSLGQVLQ 533


>gi|302803187|ref|XP_002983347.1| hypothetical protein SELMODRAFT_118068 [Selaginella moellendorffii]
 gi|300149032|gb|EFJ15689.1| hypothetical protein SELMODRAFT_118068 [Selaginella moellendorffii]
          Length = 495

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM  IF   I+ +R+LPF   Q     R E +     +RSREFL ++ ++   T 
Sbjct: 135 PTSETVMYPIFAKRIRGHRDLPFKINQWCNVVRWEFKHPTPFIRSREFLWQEGHTAYATK 194

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +      +   Y R++  L
Sbjct: 195 EEADEEVYAVLDLYRRVYEEL 215



 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           ++ RGI+       G  ++      F+    +   V   S+G+   R +  +I    D K
Sbjct: 246 LTGRGIQGATSHCLGQNFAEMFDIVFEDEKRERKKVWQNSWGL-TTRTIGVMIMVHGDDK 304

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
                    P+K          Q   DA      +L   G  V  D       G +++  
Sbjct: 305 --------VPYK------DVDTQKLFDAAASTARQLKAAGLRVKEDTRDNYSPGWKYSNW 350

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +L G PL+V +G + +++S+V +  R TG +ED+ ++++++  S
Sbjct: 351 ELKGVPLRVEIGPRDLANSQVRVVRRDTGAKEDVPMDKIVDRIS 394


>gi|106364390|dbj|BAE95216.1| predicted threonyl-tRNA synthetase [unclutured Candidatus
           Nitrosocaldus sp.]
          Length = 685

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 132/368 (35%), Gaps = 91/368 (24%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SY++LP   Y++ +  FR E      G+ R R F M D ++     E +K    K     
Sbjct: 322 SYKHLPLKIYELTRYSFRREKSGELVGLRRLRAFTMPDCHALCRDIEQAKQEMLKRLELS 381

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            ++   LG                     I L D  E  +  + DF +     EN  F  
Sbjct: 382 KQVIEGLG---------------------ISLMDDVEVAIRVTSDFYN-----ENRGFIA 415

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                I    ++E+W+  +            D+L +   +S   I+V +    G +Y + 
Sbjct: 416 ELVRRIGKPVLLEEWSERFFYFVLKWEFNFVDNLAKASALSTDQIDVEN----GARYGI- 470

Query: 298 MSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISL 351
               F   DG  K+  +   S      RV+ A++E ++    +GK  + P  ++P ++ L
Sbjct: 471 ---YFVDEDGSRKNPIILHNSPSGAVERVMYALLEKAYRMQKEGKTPMLPLWLSPTQVRL 527

Query: 352 INIKAHDQV---------------------------------------------CRDACE 366
           I +     V                                               D C 
Sbjct: 528 IPVSTRGAVKGSSSSSNNNNKDDGDGGRSGESSMGVEANSNSSSNSSNNVSSITYLDYCN 587

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I  RL +    V  DD  E +G +   A++   P  V+VG K ++  ++ ++ R +G  
Sbjct: 588 SIMHRLERSSIRVDIDDRDESVGKRIREAEMEWIPYIVVVGEKEIASDRLSVRDRASGKV 647

Query: 427 EDMSLEEV 434
            +MS+EE+
Sbjct: 648 REMSVEEL 655


>gi|240949517|ref|ZP_04753857.1| threonyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240296090|gb|EER46751.1| threonyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +            I+   G ++I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIESEVTSCIKMVYDIYSTFGFENIAVKLSTRPENRIGDD 431


>gi|18313224|ref|NP_559891.1| glycyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|18160741|gb|AAL64073.1| glycyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 586

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 320 GAMRVVAAVIESS---HDGKGII-WPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSK 374
           G  R++  V+ES+    +G+  +  P  +AP K  ++ I K  D V  +    ++  L++
Sbjct: 444 GLDRIMYVVLESAVVEEEGRVYLRLPPDIAPVKACILPIVKRADYV--EIGRTLWRSLAR 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V ++D G  IGS++A  D +G PL V +  K   D  V I+ R T  +  + L +V
Sbjct: 502 QGFVVLYEDEG-TIGSRYASCDEIGTPLAVTIDEKTPVDGTVTIRDRDTKRQVRVKLGDV 560

Query: 435 INYAS 439
           + + S
Sbjct: 561 VTFVS 565


>gi|257464982|ref|ZP_05629353.1| threonyl-tRNA synthetase [Actinobacillus minor 202]
 gi|257450642|gb|EEV24685.1| threonyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +            I+   G ++I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIESEVTSCIKMVYDIYSTFGFENIAVKLSTRPENRIGDD 431


>gi|255730209|ref|XP_002550029.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida
           tropicalis MYA-3404]
 gi|240131986|gb|EER31544.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida
           tropicalis MYA-3404]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I++ +L+  T  +   S G   +LP G + L+ +   ++ +Q + G  E+  P +    L
Sbjct: 36  ISTKQLLYTTDPV---SPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVITPLIFKTKL 92

Query: 80  WVESGRYDSYGKEMLRLADR---------NDKAMIYG--PTHEEVMTDIFRSHIKSYRNL 128
           W +SG +D+Y  +M ++            N +   YG  P +      IF    +SY+ L
Sbjct: 93  WKKSGHWDNYKDDMFKVVGNDLSKEEHTDNIEEHEYGLKPMNCPSHCMIFAKFDRSYQEL 152

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           P  +       R+E      G+ R R F   D + F
Sbjct: 153 PIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF 188


>gi|323475075|gb|ADX85681.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus REY15A]
 gi|323477807|gb|ADX83045.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 386

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PD + P ++ L+ +K       D   ++  RL K G  V  DD+ + +G++   A     
Sbjct: 270 PDWLNPIQVRLLPVKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTEWI 326

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           PL +I+G + V  S + +K R    ++ MS+EE++
Sbjct: 327 PLVIIIGEREVKTSTLTVKIRANNEQKSMSIEELV 361


>gi|322699026|gb|EFY90791.1| glycyl-tRNA synthetase 1 [Metarhizium acridum CQMa 102]
          Length = 662

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 258 ATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           ATS    EKL   L +  ++S    G+  G +        +      +        V   
Sbjct: 443 ATSQEEREKLAKQLKDTGKISLDVAGVGDGKVEVASDTLKIEFRKRIENTREFTPNVIEP 502

Query: 316 SYGIGAMRVVAAVIE---------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDAC 365
           S+GIG  R++ ++IE            + +G++ +P +VAP K+ ++ +  + Q  R   
Sbjct: 503 SFGIG--RILYSLIEHNFWTRGSDGGDEARGVLSFPPTVAPTKVLIVPLSNNTQF-RPII 559

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +K+  +L   G     DD    IG +++  D LG PL + V  + + DS + ++ R
Sbjct: 560 KKLSQQLRLAGISSRIDDSSASIGKRYSRNDELGTPLGITVDFQTLQDSTITLRDR 615



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK--HSYNKMFVSYLRI 184
            +PF    I   +R+E+ PR G++R REFLM +   F + P+G K  H ++++    L +
Sbjct: 238 QMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHF-VDPQGGKKHHRFHEVEDVVLLL 296

Query: 185 FHR 187
             R
Sbjct: 297 LDR 299


>gi|66809829|ref|XP_638638.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60467254|gb|EAL65287.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 548

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 18/168 (10%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RGI+       G  +S   +  F+   G        S+G+   R +  ++    D K
Sbjct: 263 TNGRGIQAATSHALGQNFSKMFNIEFENDKGTKSLAWQNSWGL-TTRTIGVMVMVHGDDK 321

Query: 337 GIIWPDSVAPFKISLI--NIKAHDQVCRDA-CEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           G++ P  ++P +  +I  + K  D    D+  ++I  +L   G  V  D+      G ++
Sbjct: 322 GLVLPPRISPIQAVVIPLHFKDSDTTAVDSKAKEIADQLKAAGIRVNLDNRPNYNPGHKY 381

Query: 393 AVADLLGFPLQVIVGSKFVSD-------------SKVEIKHRLTGIRE 427
              +L G P+++ +G K V+              SKVEI + +TG++E
Sbjct: 382 NHWELKGVPIRIEIGPKDVASGTVICCRRDTAEKSKVEISNIVTGVKE 429



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
             ++ R+ MI  +   G Y   P      + + A    E  +        P L S   L 
Sbjct: 61  QNVITRSEMIDYYDISGCYILRPWAYSIWEQIQAFFDAEIKKLDVQNAYFPLLVSEKALT 120

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    D  +       PT E +M   + + I+S+R+LP    Q  
Sbjct: 121 TEKDHIEGFAPEVAWVTKSGDSQLADPVAIRPTSETIMYPAYANWIRSHRDLPLKLNQWV 180

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +RSREFL ++ ++     E +      +   Y R++  L
Sbjct: 181 NVVRWEFKRPVPFLRSREFLWQEGHTAFANKEEADEEVFTILDLYRRVYEEL 232


>gi|269926770|ref|YP_003323393.1| prolyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790430|gb|ACZ42571.1| prolyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 483

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 79/215 (36%), Gaps = 36/215 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL----------------W 80
           +G+  + P G    +N+  ++      TG +    P L    L                W
Sbjct: 39  RGMMVYRPYGYAIWENIQKLLDARFKATGVVNAYFPLLIPESLLRKEAEHVEGFNPQVAW 98

Query: 81  VESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           V  G     G E L  RLA R        PT E ++  ++   ++SYR+LP    Q    
Sbjct: 99  VTHG-----GNEELEERLAVR--------PTSEAIIMQMYSKWVQSYRDLPILINQWNSV 145

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMR- 196
            R EL  R   +R+ EFL ++ ++   + E +      M   Y       L +  IP R 
Sbjct: 146 VRWELHTRL-FLRTAEFLWQEGHTLHASAEEATERTLLMLEVYRSFLEEDLAIPVIPGRK 204

Query: 197 --AESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
             +E  P   +      ++ D    Q   S DF D
Sbjct: 205 TPSERFPGAAETYTVEALMGDGRALQSATSHDFAD 239



 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 6/150 (4%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F   ++     TF   DG+  Y    S+G+ + R +  +I    D  G+I P  VAP ++
Sbjct: 237 FADHFAKAFDITFLDKDGERKYGYTTSWGL-STRTIGGIIMVHGDDSGLIIPPKVAPIQV 295

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQI--GSQFAVADLLGFPLQVI 405
            ++ I   ++  +   E I  R+ +V  D F    D+ E+   G +F   +L G P+++ 
Sbjct: 296 VVVPIWRSEEDKQKVLEHI-DRIKEVLGDSFRLHIDLSEEKTPGWKFNEWELKGVPVRLE 354

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           VG + V++S V +  R    +  + L +++
Sbjct: 355 VGPRDVANSAVVLVRRDNRDKSQVPLNDLV 384


>gi|156065255|ref|XP_001598549.1| hypothetical protein SS1G_00638 [Sclerotinia sclerotiorum 1980]
 gi|154691497|gb|EDN91235.1| hypothetical protein SS1G_00638 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 665

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 13/130 (10%)

Query: 316 SYGIGAMRVVAAVIESSH---------DGKGII-WPDSVAPFKISLINIKAHDQVCRDAC 365
           S+GIG  R++ A++E ++         + +G++ +P  VAP K+ L+ + +H+   +   
Sbjct: 506 SFGIG--RILYALMEHNYWTRGSEGGDEARGVLSFPPIVAPTKVLLVPLSSHESF-KPFL 562

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++I  +L  +G     DD    IG +++  D LG PL + V  + V+DS   ++ R +  
Sbjct: 563 KQISYKLRSMGISSRVDDSSASIGKRYSRNDELGTPLGITVDFQSVNDSTFTLRDRDSTK 622

Query: 426 REDMSLEEVI 435
           +   S E+++
Sbjct: 623 QVRASQEKIL 632



 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           + +PF    I   +R+E+ PR G++R REFLM +   F + PEG K
Sbjct: 240 QQMPFASASIGKSYRNEISPRGGLLRVREFLMAEIEHF-VDPEGGK 284


>gi|300741607|ref|ZP_07071628.1| threonine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380792|gb|EFJ77354.1| threonine--tRNA ligase [Rothia dentocariosa M567]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 81/404 (20%), Positives = 146/404 (36%), Gaps = 77/404 (19%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRSHIK 123
           +S P +   DL+  SG    Y   M    + ++     KAM   P H E    I+RS  +
Sbjct: 316 VSTPHISKEDLFYTSGHLPYYADGMFPAMELDNGNYRLKAM-NCPMHNE----IYRSRGR 370

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF---DLTPEGSKHSYNKMFV 179
           SYR LP  F++    +RDE      G+ R R     D++S+   +  P+  +H  N M  
Sbjct: 371 SYRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSYVTKEQAPDEVRHLLNFM-- 428

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +    G+    +   +    GD   +FI                         TD 
Sbjct: 429 --LSLLEDFGMTDFYLELSTRDTEGDKKDKFI------------------------GTD- 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-------NKRVSARGIE-VGHIFYFG 291
                     EQW    A    V  E   + +P+         ++S +  + +G  +   
Sbjct: 462 ----------EQWEQATAVLEQVAKETGLELVPDPGGAAFYGPKISVQAKDAIGRTWQMS 511

Query: 292 T-KYSLPMSATF----KGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T +Y     + F    + ADG     V + S   G++     V+   + G    W   ++
Sbjct: 512 TVQYDFNQPSRFGLEYQAADGSIQEPVMIHSAKFGSIERFLGVLTEHYAGAFPAW---LS 568

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++  + +    +   D   +I  +L + G  V  D   ++   +   A     P  +I
Sbjct: 569 PVQVICVPVA---EAFNDYMTEIADKLREQGVRVEVDYGSDRFTKKIRTASTEKVPFILI 625

Query: 406 VGSKFVSDSKVEIKHR----LTGIREDMSLEEVINYASHRFSNN 445
            G +      V  + R      G+  D ++  ++N+  +R + +
Sbjct: 626 AGGEDAEAGAVSFRFRGNKQENGVPVDEAVVRIVNHIRNRVNED 669


>gi|304439592|ref|ZP_07399496.1| threonine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371904|gb|EFM25506.1| threonine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 647

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 138/382 (36%), Gaps = 53/382 (13%)

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+  P + +  LW  SG +D Y   M     D  D A+   P +      ++    
Sbjct: 297 NGYGEIQTPIILNEALWHRSGHWDHYKDNMYFTKIDGEDYAV--KPMNCPGSILVYEEKA 354

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R EL     G+ R R F   DA+ + L PE  K    KM    
Sbjct: 355 HSYRDLPIRLSEFGQVHRHELSGALHGLFRVRTFTQDDAHVYCL-PEQVKDEVFKMIDLA 413

Query: 182 LRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             ++   G K  I +        G           T E      K+  D  +      + 
Sbjct: 414 ELLYSTFGFKYEIELSTRPDDFMG-----------TIEAWNIAEKNLKD-ALEERGLKY- 460

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP 297
                 +I E   A Y    D H E                  +G  +  GT    + +P
Sbjct: 461 ------TINEGDGAFYGPKIDFHLEDA----------------IGRTWQCGTIQLDFRMP 498

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                T+  ADG K   V +    +G++     ++     GK  +W   +AP ++ +I +
Sbjct: 499 ENFELTYINADGEKARPVMLHRALLGSIERFMGILIEHFAGKFPLW---LAPVQVEIIPV 555

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  E++  +L   G  V  D   E++G +   A L      +++G + V   
Sbjct: 556 ---SEKFHDYAEEVKNKLKTSGFRVEMDTRAEKVGYKIRQAQLRKVNYMLVIGEQEVESG 612

Query: 415 KVEIKHRLTGIREDMSLEEVIN 436
            + I+ R     +D+ +E+ I+
Sbjct: 613 LLSIRKRSGEEVKDVKIEDFIS 634


>gi|259147648|emb|CAY80898.1| Mst1p [Saccharomyces cerevisiae EC1118]
          Length = 462

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + +   ++ +Q  + G  E+  P +    LW +SG +++Y  +M 
Sbjct: 55  SPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMF 114

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           ++   +++   YG  P +      IF    +SY  LP  F       R+E      G+ R
Sbjct: 115 KVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHS-----------YNKMF 178
            R+F   D + F  TP   K             YNK+F
Sbjct: 175 LRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKIF 211


>gi|302897411|ref|XP_003047584.1| hypothetical protein NECHADRAFT_85892 [Nectria haematococca mpVI
           77-13-4]
 gi|256728515|gb|EEU41871.1| hypothetical protein NECHADRAFT_85892 [Nectria haematococca mpVI
           77-13-4]
          Length = 1097

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 94  LRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           + + D+N D  +   PT E +M   +   I+S+R+LP    Q     R E +     +R+
Sbjct: 55  MTIGDKNLDVPVAIRPTSEAIMYPYYSKWIRSHRDLPLRLNQWNSVVRWETKQTTPFLRT 114

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           REFL ++ ++  LT E +     ++   Y +I+  L
Sbjct: 115 REFLWQEGHTAHLTEEEAGKEVLEILELYAKIYEDL 150


>gi|237755902|ref|ZP_04584494.1| threonyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691927|gb|EEP60943.1| threonyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 80/417 (19%), Positives = 151/417 (36%), Gaps = 53/417 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +    ++E  + G   +  P +    LW  SG    Y + M    
Sbjct: 266 GLAIWLPKGAIIRKEIEDAWKKEHLKRGYQLVYTPHVGKEQLWQTSGHLSLYQENMYPRM 325

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++     P +     +I++S  +SY+ LP    ++   +R E      G+MR R F 
Sbjct: 326 QIEEEGYYVKPMNCPFHVEIYKSKQRSYKELPIRLAELGTVYRYERSGALHGLMRVRGFT 385

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVL 213
             DA+      +  +    ++    L      G     +   + P   +G D   E    
Sbjct: 386 QDDAHII-CREDQVEDEIREVLNLALNTLKSYGFDEFEVYLSTKPEKYVGDDKMWE---- 440

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                     +++ +   I S   D+        I E   A Y    DV   K+ D+   
Sbjct: 441 ---------IAENSLRKAIESTGLDY-------KIDEGGGAFYGPKIDV---KIKDA--- 478

Query: 274 NKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQMGSYGI-GAMRVVAA 327
                     +G ++   T    ++LP      + G D + H   M    I G++     
Sbjct: 479 ----------IGRLWQCSTIQFDFNLPERFDMYYIGEDNQKHRPYMIHRAIFGSIERFIG 528

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+   + G   +W   ++P ++ +I I        +  E +  +L +    V  DD  E+
Sbjct: 529 VLLEHYAGFLPVW---LSPVQVKIIPIADKH---LEYAETVKQKLLENDIRVELDDRNER 582

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  +   A+L   P  ++VG K      V ++ +     + +S++E ++      SN
Sbjct: 583 MNKKIRDAELQKIPFMLVVGDKEAETGTVAVREKGKQGSQTLSIDEFVSKIKEIISN 639


>gi|298709340|emb|CBJ31276.1| ATP binding / tRNA ligase/ threonine-tRNA ligase [Ectocarpus
           siliculosus]
          Length = 470

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 3/160 (1%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           +++   RD  +   KL L + +      G+  W P G      +    + +    G   +
Sbjct: 275 MVEAKRRDHRVLGKKLDLFS-LQEDAGGGLVFWHPKGSTIRMLIENFWKAQHLDKGYELL 333

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + + DLW  SG +D Y   M    D         P +      +++  ++SYR LP
Sbjct: 334 YTPHVANLDLWKTSGHFDFYKDGMFDQMDVEGDQYQIKPMNCPFHCLVYKDDLRSYRELP 393

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
             + ++   +R E      G+MR R F   DA+ F L PE
Sbjct: 394 IRWAEMGTVYRYERSGTLHGLMRVRGFTQDDAHIFCL-PE 432


>gi|85374048|ref|YP_458110.1| prolyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|123099532|sp|Q2NAH8|SYP_ERYLH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84787131|gb|ABC63313.1| putative prolyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 514

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT +S   +  F+  +G + Y    S+G+ + R++  VI +  D  G+
Sbjct: 236 GKALQAGTSHYLGTNFSEAANIKFQDREGGEKYCHTTSWGV-STRMIGGVIMTHGDDDGL 294

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARL 372
             P  +AP+++ ++ +   K  D      CE +  +L
Sbjct: 295 KVPPRIAPYQVVILPMLRDKPEDDALLAYCEDLRGKL 331


>gi|325989371|ref|YP_004249070.1| prolyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323574456|emb|CBZ40106.1| Prolyl-tRNA synthetase [Mycoplasma suis]
          Length = 463

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 87/423 (20%), Positives = 162/423 (38%), Gaps = 78/423 (18%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L +G    H +G + W        + + + +  E ++ G   +  P L     + E  + 
Sbjct: 21  LVSGTFFLHPRGCFIW--------EQIQSFLNAEFSKLGVSNVLFPALLPFQKFQEEQKN 72

Query: 87  DSYG--KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRD 141
                 +E++RL +   +  +    PT E + +  FR  +K     LPF   Q    +R+
Sbjct: 73  SETLNLEEIMRLHNSKSEQSVVALRPTSEILFSHYFRERLKERDIKLPFLLNQWSSVYRE 132

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E   +    RS+EF  ++ +S     +       K+   Y ++   L             
Sbjct: 133 ERNTKL-FFRSKEFYWQELHSLHENQKDLDFHLEKIHEIYKKLLREL------------- 178

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               L  E+I    TGE  +        FP  ++ T  ++ I    + +  +     T D
Sbjct: 179 ----LCIEYI----TGEKTIL-----ERFP-GAQKTLTNECI----LPDGQSLQLTTTHD 220

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           + N   F  L + K   A  IE+           L +SA              GS    +
Sbjct: 221 LSN--FFSKLMDIKYWGANDIEMT---------PLQLSA--------------GS----S 251

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVF 380
            R++ A++E   D  G+I P +++   I+++ + +  D+        I  +L      + 
Sbjct: 252 TRLIGALVEMHKDSVGVILPWNLSKENIAILLLGENRDEETISYISSIREKLCNYRLHI- 310

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD     G +    + LG P+ +I+G + + + K+ IK RL+  + +  L  + N  S 
Sbjct: 311 -DDSYSSFGKKINKVERLGIPVSLIIGQQEIKNKKITIKSRLSESKYECDLSNLENEIS- 368

Query: 441 RFS 443
           RFS
Sbjct: 369 RFS 371


>gi|6322654|ref|NP_012727.1| Mst1p [Saccharomyces cerevisiae S288c]
 gi|549032|sp|P07236|SYTM_YEAST RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; Flags:
           Precursor
 gi|486345|emb|CAA82038.1| MST1 [Saccharomyces cerevisiae]
 gi|285813075|tpg|DAA08972.1| TPA: Mst1p [Saccharomyces cerevisiae S288c]
          Length = 462

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + +   ++ +Q  + G  E+  P +    LW +SG +++Y  +M 
Sbjct: 55  SPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMF 114

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           ++   +++   YG  P +      IF    +SY  LP  F       R+E      G+ R
Sbjct: 115 KVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHS-----------YNKMF 178
            R+F   D + F  TP   K             YNK+F
Sbjct: 175 LRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKIF 211


>gi|148377533|ref|YP_001256409.1| glycyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291579|emb|CAL58965.1| Glycyl tRNA synthetase (Glycine tRNA ligase) [Mycoplasma agalactiae
           PG2]
          Length = 458

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P+ VAP+K +++ +        +  E+IY +L K+   + +DD G  IG ++   D +G 
Sbjct: 360 PNGVAPYKFAILPLVKK---LNEKAEEIYKQLLKLNIPITYDDAG-SIGKRYRRQDSIGT 415

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           P  + +    ++D  + I++R +  +E +S+  +  +A   F
Sbjct: 416 PYCITIDYDSLNDECITIRNRDSMSQERISISNLYEFAQKTF 457


>gi|172012|gb|AAA34808.1| thr-tRNA-synthetase [Saccharomyces cerevisiae]
          Length = 462

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + +   ++ +Q  + G  E+  P +    LW +SG +++Y  +M 
Sbjct: 55  SPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMF 114

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           ++   +++   YG  P +      IF    +SY  LP  F       R+E      G+ R
Sbjct: 115 KVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHS-----------YNKMF 178
            R+F   D + F  TP   K             YNK+F
Sbjct: 175 LRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKIF 211


>gi|13508292|ref|NP_110242.1| threonyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2501059|sp|P75225|SYT_MYCPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1673960|gb|AAB95937.1| threonyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|301633413|gb|ADK86967.1| threonine--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 564

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVF 380
           R +AA++E +H G   +W   +AP ++ +I  NI  H++    A +K+Y +L K    V 
Sbjct: 450 RFIAALLEKTH-GNLPLW---MAPVQVVVIPVNIDKHEK----AAKKLYQKLLKENIRVS 501

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            D+  +++G +   A +   PLQ+IVG K + D
Sbjct: 502 LDESEDRLGKKVRTAIVNKIPLQIIVGDKEMQD 534


>gi|225849423|ref|YP_002729587.1| threonyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644143|gb|ACN99193.1| threonyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 641

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +    +EE  + G   +  P +    LW  SG    Y + M    
Sbjct: 266 GLAIWLPKGAIIRKEIEDAWKEEHLKRGYQLVYTPHVGKEHLWQTSGHLSFYQENMYPRM 325

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++     P +     +I++S  +SY+ LP    ++   +R E      G+MR R F 
Sbjct: 326 QIEEEGYYVKPMNCPFHVEIYKSKQRSYKELPIRLAELGTVYRYERSGALHGLMRVRGFT 385

Query: 157 MKDAY 161
             DA+
Sbjct: 386 QDDAH 390


>gi|225155152|ref|ZP_03723647.1| threonyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224804099|gb|EEG22327.1| threonyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 646

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 284 VGHIFYFGT---KYSLPM--SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG 337
           +G  +  GT    Y+LP+    ++ GAD + H  V +     G+M     V+     G  
Sbjct: 469 IGREWQLGTVQVDYNLPVRFDLSYIGADNQPHRPVMIHRAPFGSMERFCGVLIEHFAGDF 528

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            +W   +AP ++ ++ I   D+V   + EK+Y  L + G  V  D   ++IG++   A+L
Sbjct: 529 PVW---LAPEQVRILPIS--DKVAAYS-EKLYNELREAGVRVVLDSDSDKIGAKLRRAEL 582

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              P  ++ G K      + ++ R  G
Sbjct: 583 SKIPYMIVAGQKEAEAEAISVRSRAKG 609


>gi|51893696|ref|YP_076387.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|73919833|sp|Q67LA3|SYT_SYMTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51857385|dbj|BAD41543.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 651

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 3/157 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G   WL  G +    +    R+ Q   G  E+S P + S+ L+  SG +  Y + M  
Sbjct: 262 APGFAFWLDKGYRLYRELENWSRKLQEARGYEEVSTPWIVSSKLYETSGHWQHYRQNMFE 321

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           +    D+     P +      +++S I+SYR+LP    +     R E      G++R R 
Sbjct: 322 IR-AEDQDFATKPMNCPCHCVLYKSQIRSYRDLPLKIAEYGPLSRFEASGTLHGLLRVRG 380

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           F   DA+ F + P+  +    ++      I+  LGL+
Sbjct: 381 FHQDDAHLF-VRPDQIEEQIREVIGLVDTIYGTLGLE 416


>gi|323336851|gb|EGA78113.1| Mst1p [Saccharomyces cerevisiae Vin13]
 gi|323347699|gb|EGA81963.1| Mst1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 462

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + +   ++ +Q  + G  E+  P +    LW +SG +++Y  +M 
Sbjct: 55  SPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMF 114

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           ++   +++   YG  P +      IF    +SY  LP  F       R+E      G+ R
Sbjct: 115 KVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHS-----------YNKMF 178
            R+F   D + F  TP   K             YNK+F
Sbjct: 175 LRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKIF 211


>gi|167957086|ref|ZP_02544160.1| threonyl-tRNA synthetase [candidate division TM7 single-cell
           isolate TM7c]
          Length = 603

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 71  VPTLQSADLWVESGRYDSYGKEM-LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P +   DL+ +SG +  +G+E+ L  +      M   P +    T IF S  +SYR++P
Sbjct: 257 TPHITKKDLYEKSGHWAKFGEELFLVKSQETSDEMALKPMNCPHHTQIFASRPRSYRDMP 316

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             + +    +RDE      G+ R R     D++ F   P+  +   N +  +   ++  +
Sbjct: 317 VRYLETTTDYRDEKTGELGGLSRVRSLTQDDSHVF-CRPDQIEEEINNLLSAARELYESI 375

Query: 189 GLK 191
            +K
Sbjct: 376 DMK 378


>gi|240282267|gb|EER45770.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325088406|gb|EGC41716.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 606

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 199 PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTE 258

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
            G+     ++   Y  ++  L
Sbjct: 259 GGAHEEVLQILEHYAHVYEEL 279


>gi|282599730|ref|ZP_05971662.2| threonine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282568410|gb|EFB73945.1| threonine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 653

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 82/425 (19%), Positives = 153/425 (36%), Gaps = 50/425 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + Y L + +   RD      +L L    + + + G+  W   G      +   +R +   
Sbjct: 241 AAYLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKS 298

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW  +G +++Y   M   +  N +  +  P +      IF   +K
Sbjct: 299 YNYQEVKGPFMMDRVLWERTGHWENYKDAMFTTSSENREYCV-KPMNCPGHVQIFNQGLK 357

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T +              
Sbjct: 358 SYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILSEVTSCIEMIY 416

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++   G + I ++  + P   IG D   +    A+        SK       P E   +
Sbjct: 417 DVYSTFGFEKIVVKLSTRPEKRIGTD---DMWDTAEADLANALKSKGIEFEYQPGEGAFY 473

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                       L+D L        R  + G +      + LP  
Sbjct: 474 GPKIEFT--------------------LYDCLD-------RAWQCGTV---QLDFFLPGR 503

Query: 298 MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           ++A++ G + +    V +    +G++     ++   + G    +P  +AP ++ ++NI  
Sbjct: 504 LNASYVGENNERITPVMIHRAVLGSLERFIGILTEEYAG---FFPTWLAPQQVVVMNIT- 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +++  +L  VG     D   E+IG +     L   P  ++ G K V   KV
Sbjct: 560 --DTQAEYVQELVNKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKV 617

Query: 417 EIKHR 421
            ++ R
Sbjct: 618 SVRTR 622


>gi|151941725|gb|EDN60086.1| mitochondrial aminoacyl-tRNA synthetase, threonine [Saccharomyces
           cerevisiae YJM789]
 gi|190409649|gb|EDV12914.1| threonyl-tRNA synthetase, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
 gi|323304221|gb|EGA57996.1| Mst1p [Saccharomyces cerevisiae FostersB]
 gi|323308307|gb|EGA61553.1| Mst1p [Saccharomyces cerevisiae FostersO]
 gi|323332690|gb|EGA74095.1| Mst1p [Saccharomyces cerevisiae AWRI796]
 gi|323354220|gb|EGA86064.1| Mst1p [Saccharomyces cerevisiae VL3]
          Length = 462

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + +   ++ +Q  + G  E+  P +    LW +SG +++Y  +M 
Sbjct: 55  SPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMF 114

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           ++   +++   YG  P +      IF    +SY  LP  F       R+E      G+ R
Sbjct: 115 KVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHS-----------YNKMF 178
            R+F   D + F  TP   K             YNK+F
Sbjct: 175 LRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKIF 211


>gi|145529361|ref|XP_001450469.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418080|emb|CAK83072.1| unnamed protein product [Paramecium tetraurelia]
          Length = 769

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + HQ S G   + P G    + +   +R +    G  E+  P + +A LW  SG YD Y 
Sbjct: 180 LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRGYQEVISPNIFNAQLWKISGHYDKYK 239

Query: 91  KEM--LRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           + +  + + +  +  +  +  P H  +M D+ +    SYR+LP  F    +  R+E+   
Sbjct: 240 ENLFFINMGEEGEYGLKPMNCPGH-CLMFDMIQH---SYRDLPVRFADFGVLHRNEVHGA 295

Query: 147 F-GVMRSREFLMKDAYSF 163
             G+ R R F   DA+ F
Sbjct: 296 LSGLTRVRRFQQDDAHIF 313


>gi|303278011|ref|XP_003058299.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460956|gb|EEH58250.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 698

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G    + +    ++     G   +  P +   DLW  SG  D Y + M +  
Sbjct: 321 GLVFWHPKGALMRNIIENFWKDIHMARGYDLLYTPHVGKLDLWKTSGHADFYAENMYKPM 380

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  D+     P +      +++    SYR+LP  + ++   +R E      G+ R R F 
Sbjct: 381 DVEDETYQLKPMNCPFHVAVYKDGYFSYRDLPIRWAEMGTVYRYERSGTMHGLFRVRGFT 440

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 441 QDDAHIFCL 449


>gi|301167107|emb|CBW26686.1| threonyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 584

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 3/161 (1%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           ++P G    + +   +RE   +    E+  P +  +DLW  SG Y+ Y KE +  +  ++
Sbjct: 206 FMPKGAFVYNRLIEFMREIYRKYDYQEVITPQILDSDLWHTSGHYEHY-KENMYFSRIDE 264

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRFGVMRSREFLMKDA 160
           +     P +      +F+ +  SYR+LP  +    +L   ++     G+ R R F   DA
Sbjct: 265 REYAVKPMNCPCHMLMFKHYKYSYRDLPMRYADFGRLHRYEKAGAVTGLTRVRTFCQDDA 324

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           + F +  +G +    K+   +   +   G   I +   + P
Sbjct: 325 HIF-IDMDGIQDEITKLMEMFFICYEHFGFTGIKVNLSTRP 364


>gi|164427281|ref|XP_964988.2| threonyl-tRNA synthetase, mitochondrial precursor [Neurospora
           crassa OR74A]
 gi|157071680|gb|EAA35752.2| threonyl-tRNA synthetase, mitochondrial precursor [Neurospora
           crassa OR74A]
          Length = 498

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M   +S G   +LP G +  + +   +R++    G  E+  PT+    LW +SG  ++Y 
Sbjct: 67  MTSIYSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQEVITPTIYKKALWAKSGHLENYA 126

Query: 91  KEMLRLA----DRND-----KAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
            +M  +      R D     +A  YG  P +      IF +  +SYR+LP  +       
Sbjct: 127 DDMFTVTSTSPSRADVTEAGEADEYGLKPMNCPGHCLIFAAQKRSYRDLPIRYADFSPLH 186

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R+E+     G+ R R F   D + F   P   +   +K      R++    L S  ++  
Sbjct: 187 RNEISGALSGLTRVRRFHQDDGHIF-CRPNQIEDEISKTLEFIRRVYKDFRLGSYRLKLS 245

Query: 199 SGP 201
           + P
Sbjct: 246 TRP 248


>gi|297626431|ref|YP_003688194.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922196|emb|CBL56764.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 680

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  FY++   FR E      G+ R R F   D++++  TPE +     
Sbjct: 367 IFRSRGRSYRELPLRFYELGRDFRYEKSGVVQGLTRMRGFTQDDSHTY-CTPEQAGDEIK 425

Query: 176 KMFVSYLRIFHRLGLK 191
            +   +L I    GLK
Sbjct: 426 MLLGFFLSILRDFGLK 441


>gi|261493242|ref|ZP_05989769.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496515|ref|ZP_05992895.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307718|gb|EEY09041.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311092|gb|EEY12268.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDD 431


>gi|297565426|ref|YP_003684398.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849875|gb|ADH62890.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 652

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   + E++   G   +  P + S+ L+  SG    Y  +M  
Sbjct: 270 GKGLPLWLPKGAFIRKQLEQYMYEKEQEYGYDYVITPHIASSKLYYTSGHLPYYKDDMYA 329

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             +   +     P +      I+++ ++SYR+LP    +    +R EL     G+ R R 
Sbjct: 330 PIEIEGEEYYLKPMNCPHHHMIYKARLRSYRDLPLRLAEFGTVYRFELSGTLSGLARVRG 389

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           F   DA+ +      SK      F+  +++F
Sbjct: 390 FTQNDAHIY-----CSKSQVTDEFIKVIQLF 415


>gi|283457978|ref|YP_003362585.1| threonyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134000|dbj|BAI64765.1| threonyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 706

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 16/210 (7%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPL----GQKALDNVNAIIREEQNRTGAI 67
           +E   +AE   H+ + R   +    K I   LP+    G      +   +R    + G  
Sbjct: 283 KERIAEAERRDHRRLGRELDLFSFPKNIGPGLPVIHPKGGVIKREMEDYVRTRHIQEGFQ 342

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRSHI 122
            +S P +   DL+  SG    Y   M    + ++     KAM   P H E    I+RS  
Sbjct: 343 YVSTPHISKEDLFYTSGHLPYYADGMFPPMELDNGHYRLKAM-NCPMHNE----IYRSRG 397

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  F++    +RDE      G+ R R     D++S+ +T E +      +    
Sbjct: 398 RSYRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSY-VTKEQAPDEVRHLLKFM 456

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           L +    G+    +   +    GD   +FI
Sbjct: 457 LSLLEDFGMTDFYLELSTRDTEGDKKDKFI 486


>gi|296820624|ref|XP_002849971.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238837525|gb|EEQ27187.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 520

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   + P G   L+ + + +R +  + G  E+  P +    LW  SG + +Y  +M 
Sbjct: 73  YSPGSPLFRPNGTHILNKLISFLRAQYRQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMY 132

Query: 95  RLADRNDKAM-----IYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            +  R + A       YG  P +      +F+S   SYR LP  +       R+E+    
Sbjct: 133 EVGGRGNTAEATEDETYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVSGSL 192

Query: 148 -GVMRSREFLMKDAYSF 163
            G+ R R F   D + F
Sbjct: 193 SGLTRVRRFHQDDGHIF 209


>gi|149244270|ref|XP_001526678.1| threonyl-tRNA synthetase, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146449072|gb|EDK43328.1| threonyl-tRNA synthetase, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 486

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 40/181 (22%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           EI++ +L+  T +    S G   +LP G + L+ +   ++ +Q + G  E+  P +    
Sbjct: 43  EISTKQLLYTTDIT---SPGSIFFLPHGTRILNKLIQFMKNQQIKYGFHEVVTPLIFKTK 99

Query: 79  LWVESGRYDSYGKEMLRLADRNDKA-----MIYGPT-HEEVMTD---------------- 116
           LW +SG +D+Y  +M ++   NDK+     ++  PT   E +TD                
Sbjct: 100 LWKKSGHWDNYKDDMFKVVG-NDKSKEEVVVVLAPTVQSESLTDDGNDSALQEAFEEEHE 158

Query: 117 -------------IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
                        IF    +SY  LP  +       R+E      G+ R R F   D + 
Sbjct: 159 YGLKPMNCPGHCMIFSKFERSYNELPIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHI 218

Query: 163 F 163
           F
Sbjct: 219 F 219


>gi|321309527|ref|YP_004191856.1| prolyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319801371|emb|CBY92017.1| prolyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEML---RLADRND 101
           G    + +   I  +  + G   +S PT +  A++  E  R   +  E+    R  D   
Sbjct: 37  GWNIWEKIRDFIDAKYKQKGIKNVSFPTFIPVAEIEREKSRLSGFNPEIYLVSRSGDEER 96

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           +     PT E + +  FR+ ++SY +LP  F Q    FR E   +   +R+ EF  ++A+
Sbjct: 97  QNFFLRPTSEILFSHYFRNILESYEDLPLLFNQWCNVFRAEKNTK-AFLRTCEFHWQEAH 155

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFH 186
           +  L+ E +        + YL+ FH
Sbjct: 156 TLHLSKEEA--------MEYLKFFH 172



 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 3/158 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++    Y    ++      +   +    Y    S G  + R++ A+I S  D  G+
Sbjct: 214 GQALQIATSHYLSKNFTETFDVKYTSRENVVSYPHQLSAGC-STRLIGALIMSHGDDSGL 272

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P S+    I  + I        +  +K    L   G  V WD      G +    +++
Sbjct: 273 VLPLSMFDVHIKFLIINGAVTEGSELHKKFSDELK--GYKVEWDFSSRSFGYKIKNEEMI 330

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P+ VI+G   +  +   +K RL+  +  + ++++I+
Sbjct: 331 GTPVSVILGPSEIKSNWALVKTRLSESKVSIPMDQLIS 368


>gi|159040920|ref|YP_001540172.1| glycyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|157919755|gb|ABW01182.1| glycyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 590

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 90/183 (49%), Gaps = 13/183 (7%)

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A + V+ E+L   L     V   G +V     F    S  +S      +   H ++  S+
Sbjct: 390 ALASVNPEELVRELTSKGEVVINGFKVTRDMVFIKTESRKVST----ENFIPHVIE-PSF 444

Query: 318 GIGAMRVVAAVIESSH---DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           GI   R++   +E+++   DG+ ++  P  VAP  ++++ I +  ++ + A + I   L 
Sbjct: 445 GID--RILYVTLENAYALIDGRIVLKLPRDVAPITVAVLPIVSRGELIKVA-KDIRINLI 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G    +DD G  IG+++A  D LG PL V V +  + D+ V ++ R + ++  + +++
Sbjct: 502 NEGITAVYDD-GGTIGARYAKWDSLGTPLAVTVDADTLKDNTVTVRDRDSRVQVRVKVQD 560

Query: 434 VIN 436
           +++
Sbjct: 561 LVS 563


>gi|322387197|ref|ZP_08060807.1| serine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321141726|gb|EFX37221.1| serine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 424

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G Y  +  +   ++D N    +  PT E  +T+ +R  I   + LP  F  +
Sbjct: 200 NHDSMFGTGNYPKFKDDTFEISDTN---YVLIPTAEVPLTNYYRDEIIDGKELPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|255327209|ref|ZP_05368284.1| threonine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295827|gb|EET75169.1| threonine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 677

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 16/210 (7%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPL----GQKALDNVNAIIREEQNRTGAI 67
           +E   +AE   H+ + R   +    K I   LP+    G      +   +R    + G  
Sbjct: 254 KERIAEAERRDHRRLGRELDLFSFPKNIGPGLPVIHPKGGVIKREMEDYVRTRHIQEGFQ 313

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRSHI 122
            +S P +   DL+  SG    Y   M    + ++     KAM   P H E    I+RS  
Sbjct: 314 YVSTPHISKEDLFYTSGHLPYYADGMFPPMELDNGHYRLKAM-NCPMHNE----IYRSRG 368

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  F++    +RDE      G+ R R     D++S+ +T E +      +    
Sbjct: 369 RSYRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSY-VTKEQAPDEVRHLLKFM 427

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           L +    G+    +   +    GD   +FI
Sbjct: 428 LSLLEDFGMTDFYLELSTRDTEGDKKDKFI 457


>gi|312194258|ref|YP_004014319.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311225594|gb|ADP78449.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 468

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 3/145 (2%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++      + GADG  H     S+G  + R+V  +I +  D  G+  P  +AP ++
Sbjct: 230 LGQNFARAFDIDYLGADGARHLAWTTSWG-SSTRMVGGLIMAHGDDAGLRVPPRLAPTQV 288

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGS 408
            ++ ++  ++V   A + I   L   G     D   G   G +    +L G P++V VG 
Sbjct: 289 VVLPVRDDEKVVATATQ-IADALKAAGVRATLDARPGLSFGRRVTDWELKGAPVRVEVGP 347

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEE 433
           + ++   V +  R TG +  + L E
Sbjct: 348 RDLAVGNVTLARRDTGEKITVPLAE 372



 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E V+ +      +SYR+LP    Q     R ELRPR   
Sbjct: 96  GKEL-------EEPVVVRPTSETVIGEYMAKWTQSYRDLPLLLNQWANVVRWELRPRL-F 147

Query: 150 MRSREFLMKDAYS 162
           +R+ EFL ++ ++
Sbjct: 148 LRTSEFLWQEGHT 160


>gi|42524428|ref|NP_969808.1| prolyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|81616476|sp|Q6MIW2|SYP_BDEBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39576637|emb|CAE80801.1| proS [Bdellovibrio bacteriovorus HD100]
          Length = 499

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      +  A+GK+ +    S+G+ + R++  +I +  D  G +
Sbjct: 233 KALQAGTSHFLGQNFAKASEIKYLSAEGKEEFAWTTSWGV-STRLIGGLIMTHSDDNGFV 291

Query: 340 WPDSVAPFKISLINIKAHD----QVCR--DACEKIYARLSKVGCDVF--WDDMGEQIGSQ 391
            P  +AP  + +I I  +D    QV     A EK     + VG  V    DD   + G +
Sbjct: 292 VPPRLAPLHVVIIPIYRNDEERAQVLDYVKALEKDLKAQNYVGSSVRVKIDDRDMRGGEK 351

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                  G P++V VG + ++  +V +  R  G +E  S+E
Sbjct: 352 AWQYIKQGVPVRVEVGPRDMAKGEVFVGRRDRGPKEKASME 392


>gi|328479960|gb|EGF49006.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 40

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIY 40
          M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y
Sbjct: 1  MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVY 40


>gi|687792|gb|AAC43729.1| putative threonyl-tRNA synthetase; similar to E. coli threonyl-tRNA
           synthetase SwissProt Accession Number P00955
           [Haemophilus influenzae]
 gi|1587744|prf||2207242E ORF 4
          Length = 443

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|302534311|ref|ZP_07286653.1| glycyl-tRNA synthetase [Streptomyces sp. C]
 gi|302443206|gb|EFL15022.1| glycyl-tRNA synthetase [Streptomyces sp. C]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 133/356 (37%), Gaps = 61/356 (17%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   KA +   T + + T+       S +  PF   Q+   FR+E+ P   + R+REF  
Sbjct: 152 DTGSKAYLRPETAQGIFTNFAMVQTSSRKKPPFGIAQMGKSFRNEITPGNFIFRTREFEQ 211

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +   F + P G    + + ++     ++R LGL+   MR    P    LSH     AD 
Sbjct: 212 ME-MEFFVKP-GEDDQWQEYWMQERWNWYRGLGLREENMRWYDHP-AEKLSHYSKRTADI 268

Query: 217 GETQVFCSKDFMDFPIPSENTDFD----------DIISLNSIVEQWTAPYAATSDVHNEK 266
                F   +F +    +  TD+D          D++  +   ++   PY          
Sbjct: 269 EYRFNFGGSEFSELEGVANRTDYDLKAHSAASGTDLVYYDQEAQEKYTPYVIE------- 321

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                       A G+    + +    Y    +   KGA  K   ++             
Sbjct: 322 -----------PAAGVNRAMLAFMLDAYVEDEAPNAKGAMEKRTVMRFDP---------- 360

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                            +AP K++++ +  +  +   A + + A L K   ++ +DD G 
Sbjct: 361 ----------------RLAPVKVAVLPLSRNANLSPKA-KGLAADLRK-NWNIEFDDAG- 401

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            IG ++   D +G P  V V    + D+ V ++ R T  +E +SL+++ +Y   R 
Sbjct: 402 AIGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVSLDQIQSYLGSRL 457


>gi|38567275|emb|CAE76565.1| related to threonine--tRNA ligase [Neurospora crassa]
          Length = 497

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M   +S G   +LP G +  + +   +R++    G  E+  PT+    LW +SG  ++Y 
Sbjct: 66  MTSIYSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQEVITPTIYKKALWAKSGHLENYA 125

Query: 91  KEMLRLA----DRND-----KAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
            +M  +      R D     +A  YG  P +      IF +  +SYR+LP  +       
Sbjct: 126 DDMFTVTSTSPSRADVTEAGEADEYGLKPMNCPGHCLIFAAQKRSYRDLPIRYADFSPLH 185

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R+E+     G+ R R F   D + F   P   +   +K      R++    L S  ++  
Sbjct: 186 RNEISGALSGLTRVRRFHQDDGHIF-CRPNQIEDEISKTLEFIRRVYKDFRLGSYRLKLS 244

Query: 199 SGP 201
           + P
Sbjct: 245 TRP 247


>gi|328778641|ref|XP_395662.3| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like isoform 1
           [Apis mellifera]
          Length = 718

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   + P G    + +   IR E  + G  E+  P + +  LW  SG +  Y 
Sbjct: 330 FFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKRGFQEVVTPNIYNNKLWQTSGHWLHYA 389

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    D   +     P +      IF    +S+R LP       +  R+E+     G+
Sbjct: 390 ENMFSF-DVEKETFALKPMNCPGHCMIFDVRNRSWRELPLRMADFGVLHRNEMSGALTGL 448

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 449 TRVRRFQQDDAHIF 462


>gi|301170119|emb|CBW29723.1| threonyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431



 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 294 YSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           ++LP  + AT+   D  +   V +    +G++     +I   + G   +W   +AP +  
Sbjct: 487 FALPGRLDATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPVW---LAPTQAV 543

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +INI        D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K 
Sbjct: 544 VINITDSQA---DYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKE 600

Query: 411 VSDSKVEIKHR 421
           +++ KV ++ R
Sbjct: 601 IAEGKVAVRTR 611


>gi|229846781|ref|ZP_04466888.1| threonyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810270|gb|EEP45989.1| threonyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|148825906|ref|YP_001290659.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166223344|sp|A5UBX5|SYT_HAEIE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148716066|gb|ABQ98276.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|327300907|ref|XP_003235146.1| glycyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326462498|gb|EGD87951.1| glycyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E ++      + +G++ +P +VAP K+ L+ +  H    +   +++
Sbjct: 502 SFGIG--RILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTHASF-QPLIQRL 558

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG +++  D LG P  +    + V D+   ++ R T  +  
Sbjct: 559 TLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRDRDTTKQVR 618

Query: 429 MSLEEVIN 436
            S +E+ N
Sbjct: 619 ASEDEICN 626



 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 236 QSMPFASACIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 280


>gi|303253033|ref|ZP_07339186.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247204|ref|ZP_07529254.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648123|gb|EFL78326.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306856262|gb|EFM88415.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 142/397 (35%), Gaps = 48/397 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW  +G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLS 207
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D  
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDD-- 431

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                + D  E       D +   + +    ++       I E   A Y    +      
Sbjct: 432 ----AMWDRTE-------DGLAKALTANGLSYE-------IQEGEGAFYGPKIEFALRDC 473

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRV 324
            D          R  + G I      ++LP  + A++   D G+   V +    +G++  
Sbjct: 474 LD----------REWQCGTI---QLDFALPGRLDASYVAEDNGRRTPVMIHRAILGSIER 520

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +I   + G    +P  +AP +  ++NI        D  +K+   LS  G     D  
Sbjct: 521 FIGIITEEYAG---FFPTWLAPTQAVVMNITDSQA---DYVQKVTKALSDAGIRAKSDLR 574

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 575 NEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTR 611


>gi|148826837|ref|YP_001291590.1| threonyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166223345|sp|A5UEK1|SYT_HAEIG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148718079|gb|ABQ99206.1| threonyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|46446958|ref|YP_008323.1| prolyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626837|sp|Q6MBK1|SYP_PARUW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46400599|emb|CAF24048.1| putative prolyl-tRNA synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ D F   ++SYR+LP    Q     R E+RPR   +R+ EFL ++ 
Sbjct: 117 EEPLIVRPTSETIIGDSFSRWVESYRDLPLLINQWANVVRWEMRPRI-FLRTTEFLWQEG 175

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T E +      M   Y
Sbjct: 176 HTAHATHEEALQETMTMLEVY 196


>gi|221632630|ref|YP_002521851.1| prolyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221156093|gb|ACM05220.1| prolyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 484

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           +FG  + +    TF   +GK  YV   S+G+ + R + A++    D +G+  P  VAP +
Sbjct: 240 HFGKVFDI----TFLDREGKRRYVFNTSWGL-SHRTIGAMVMVHGDDRGLKLPPRVAPIQ 294

Query: 349 ISLINIKAHDQVCR------DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           + ++ I   D+  R      D    +  R  +V  D+  DD  +  G +F   DL G P+
Sbjct: 295 VVIVPIWRKDEERRQVEETVDRVRAMLRRAVRVHADLR-DD--KTPGWKFNDWDLKGVPI 351

Query: 403 QVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVIN 436
           ++ +G + V+  +V +  R + G R+ + +  ++ 
Sbjct: 352 RLEIGPRDVASDQVTLVRRDVLGQRQAVPIANLVG 386



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++  +F   ++SYR+LP    Q     R E RPR   +R+ EFL ++ ++   T 
Sbjct: 114 PTSESIICPMFARWVQSYRDLPILINQWCSVVRWEERPR-AFLRTLEFLWQEGHTVHATL 172

Query: 168 EGSKHSYNKMFVSYLRIFH-RLGLKSIP-MRAESGPIGGDL 206
           E ++     M   Y       L +  IP  + ES    G L
Sbjct: 173 EEAEERARLMLEVYRDFVESELAIPVIPGQKTESEKFAGAL 213


>gi|223995497|ref|XP_002287422.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976538|gb|EED94865.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 517

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +I  PT E ++ ++F+  I S+R+LP    Q     R E+R R   +R+ EFL ++ ++ 
Sbjct: 129 LIIRPTSETMIWNMFKKWIVSHRDLPLKMNQWANVMRWEMRTR-PFLRTSEFLWQEGHTA 187

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRL 188
             T EG+      M   Y  +   L
Sbjct: 188 HATSEGALEDSKLMLDQYAEMCQNL 212



 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 9/162 (5%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  +      TF+ A+GK   V   S+G+ + R++ A+I +  D  G++ 
Sbjct: 246 ALQSGTSHFLGQSFGKAFDVTFQDAEGKQQDVWGTSWGV-STRLIGALIMTHSDDAGLVL 304

Query: 341 --PDSVAPFKISLINIKAHDQ----VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
               +     +  I  K +D+       +A +K+ A L   G  V  DD    + G+++ 
Sbjct: 305 PPRVAPVQVVVVPIPPKKNDEEGKVALNNALDKMVANLKSAGLKVKVDDRDYVRNGAKYF 364

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMSLEEV 434
             +  G PL++ +G + V       K+R+    +E +SL+EV
Sbjct: 365 EWERKGVPLRIELGPRDVKGGVCVFKYRVGKEEKETVSLDEV 406


>gi|145631389|ref|ZP_01787160.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144983048|gb|EDJ90552.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|312865429|ref|ZP_07725656.1| serine--tRNA ligase [Streptococcus downei F0415]
 gi|311098947|gb|EFQ57164.1| serine--tRNA ligase [Streptococcus downei F0415]
          Length = 425

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 22/179 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGAKVTGSRFLFYKGLGARLERAIYNFM------LD--------EHAKEGYTEVIPPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   LAD +D  +I  PT E  +T+ +R  I   + +P  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELAD-SDYVLI--PTAEVPLTNYYRGEILDGKEMPVYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPETSYEELEKMTANAENILQKLNL 314


>gi|222153600|ref|YP_002562777.1| seryl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254783494|sp|B9DVD8|SYS_STRU0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|222114413|emb|CAR43194.1| seryl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 425

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   L D N    +  PT E  +T+ +
Sbjct: 183 DEHAKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELKDSN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   ++LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKDLPINFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +L L
Sbjct: 299 EKMTANAENILQKLNL 314


>gi|260582696|ref|ZP_05850484.1| threonyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260094262|gb|EEW78162.1| threonyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|145636075|ref|ZP_01791745.1| threonyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|229844174|ref|ZP_04464315.1| threonyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|145270597|gb|EDK10530.1| threonyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|229813168|gb|EEP48856.1| threonyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|162452628|ref|YP_001614995.1| hypothetical protein sce4352 [Sorangium cellulosum 'So ce 56']
 gi|161163210|emb|CAN94515.1| thrS [Sorangium cellulosum 'So ce 56']
          Length = 753

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 16/178 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE-----MS 70
           +DA++  H        + +   G+  WLP G      +   I E+Q R   +E     + 
Sbjct: 357 KDADVEVH---FEPHFVEEIGAGLVMWLPKG-----GLLRTIIEDQWRKMHLEEGYDIVY 408

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +  ADLW  SG +D Y + M      +       P +      + +S  +SYR  P 
Sbjct: 409 SPHIAKADLWKTSGHWDFYREGMFSPMSVDGHDYCCKPMNCPFHILMVKSRTRSYREFPM 468

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP--EGSKHSYNKMFVSYLRIF 185
              ++   +R E      G+MR R F   DA+ F      E   H   +  +  LR F
Sbjct: 469 RLAELGTVYRYEAAGVMHGLMRVRGFTQDDAHLFCRADQVEQEIHRVLRFILKMLRTF 526


>gi|149007999|ref|ZP_01831556.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225856139|ref|YP_002737650.1| seryl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|225858264|ref|YP_002739774.1| seryl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|254783048|sp|C1C5E8|SYS_STRP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783496|sp|C1CIR2|SYS_STRZP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|147760511|gb|EDK67487.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225721092|gb|ACO16946.1| seryl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225725287|gb|ACO21139.1| seryl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|332076855|gb|EGI87317.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA17545]
 gi|332204437|gb|EGJ18502.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 424

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  + + +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLANYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|302664275|ref|XP_003023770.1| hypothetical protein TRV_02082 [Trichophyton verrucosum HKI 0517]
 gi|291187783|gb|EFE43152.1| hypothetical protein TRV_02082 [Trichophyton verrucosum HKI 0517]
          Length = 1327

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E ++      + +G++ +P +VAP K+ L+ +  H    +   +++
Sbjct: 502 SFGIG--RILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTHASF-QPLIQRL 558

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG +++  D LG P  +    + V D+   ++ R T  +  
Sbjct: 559 TLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRDRDTTKQVR 618

Query: 429 MSLEEVIN 436
            S +E+ N
Sbjct: 619 ASEDEICN 626



 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 236 QSMPFASACIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 280


>gi|302505475|ref|XP_003014444.1| hypothetical protein ARB_07006 [Arthroderma benhamiae CBS 112371]
 gi|291178265|gb|EFE34055.1| hypothetical protein ARB_07006 [Arthroderma benhamiae CBS 112371]
          Length = 1327

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E ++      + +G++ +P +VAP K+ L+ +  H    +   +++
Sbjct: 502 SFGIG--RILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTHASF-QPLIQRL 558

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG +++  D LG P  +    + V D+   ++ R T  +  
Sbjct: 559 TLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRDRDTTKQVR 618

Query: 429 MSLEEVIN 436
            S +E+ N
Sbjct: 619 ASEDEICN 626



 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 236 QSMPFASACIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 280


>gi|68250118|ref|YP_249230.1| threonyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81335458|sp|Q4QK77|SYT_HAEI8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|68058317|gb|AAX88570.1| threonyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|309973051|gb|ADO96252.1| Threonyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|326481313|gb|EGE05323.1| glycyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E ++      + +G++ +P +VAP K+ L+ +  H    +   +++
Sbjct: 502 SFGIG--RILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTHASF-QPLIQRL 558

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG +++  D LG P  +    + V D+   ++ R T  +  
Sbjct: 559 TLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRDRDTTKQVR 618

Query: 429 MSLEEVIN 436
            S +E+ N
Sbjct: 619 ASEDEICN 626



 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 236 QSMPFASACIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 280


>gi|326468704|gb|EGD92713.1| glycyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E ++      + +G++ +P +VAP K+ L+ +  H    +   +++
Sbjct: 502 SFGIG--RILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTHASF-QPLIQRL 558

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG +++  D LG P  +    + V D+   ++ R T  +  
Sbjct: 559 TLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRDRDTTKQVR 618

Query: 429 MSLEEVIN 436
            S +E+ N
Sbjct: 619 ASEDEICN 626



 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 236 QSMPFASACIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 280


>gi|269219392|ref|ZP_06163246.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211185|gb|EEZ77525.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 709

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 124/328 (37%), Gaps = 42/328 (12%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  TPE +K    
Sbjct: 366 IFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQAKGEIE 424

Query: 176 KMFVSYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF- 230
            +   +L I    GL      +  R E       +  +    A T   +  C+   +D  
Sbjct: 425 MLLNFFLDILRDFGLTDFYLELSTRDEGKKKDKFIGSDEDWAAATRILEEACAATGLDLV 484

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           P P     +   +S+                    ++ D+L    ++S    +      F
Sbjct: 485 PDPGGAAFYGPKVSV--------------------QVKDALGRTWQMSTVQYDFNQPERF 524

Query: 291 GTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             +Y+ P        DG +   V + S  +G++     V+   + G    W   +AP + 
Sbjct: 525 DLEYTAP--------DGSRRRPVMIHSAKLGSVERFIGVLTEHYAGAFPAW---LAPVQA 573

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L+ +    +     CE++ A+L   G  V  D   ++ G +   A     P  +I G +
Sbjct: 574 RLVPVA---EAFNPYCEEVAAKLRAAGIRVDVDLSDDRFGKKIRNAAKEKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINY 437
                 V  ++R       +S++E + +
Sbjct: 631 DAEAEAVSFRYRDGHQENGVSVDEAVAH 658


>gi|302554424|ref|ZP_07306766.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302472042|gb|EFL35135.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 471

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 71/161 (44%), Gaps = 3/161 (1%)

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G  ++   +  +   DG+   V   S+G    R++ A++    D  G+  P  +A  + 
Sbjct: 233 LGQNFAKAFNTRYLSKDGRQELVWQTSWG-STTRMIGALVMMHGDDGGLRVPPRLAQIQA 291

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGS 408
            ++ IK  D+       ++  RL   G  V  DD  +   G +    +L G P+++ VG 
Sbjct: 292 VVLAIKG-DEAVLAKVRELGDRLKAAGVRVHVDDRTDIPFGRRAVDWELKGVPVRIEVGP 350

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + +    +  R+ G +E +SL+ +++        ++ +L
Sbjct: 351 RDLENGTAMLARRIPGGKEPVSLDALVSLLPEVLEKDQALL 391



 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 29/212 (13%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P   + PR        AE+A +  +  T +I  +  G++      ++    +
Sbjct: 1   MAKAPVLTPQADDFPRWYQDLITKAELADNGPVRGTMIIRPYGYGLW------ERMQAEM 54

Query: 54  NAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGP 108
           +A I+E    TGA     P L   + L  E+   + +  E+  +     K +    +  P
Sbjct: 55  DARIKE----TGAQNAYFPLLIPESYLTREADHVEGFAPELAVVTHGGGKELEEPAVVRP 110

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T E ++   F   ++SYR+LP    Q     R ELRPR   +R+ EFL ++ ++   T E
Sbjct: 111 TSEMIINASFSKWVQSYRDLPLLINQWANVVRWELRPRL-FLRTSEFLWQEGHTAHATYE 169

Query: 169 GSK----HSYNKMFVSYLRIFHRLGLKSIPMR 196
            ++    H + +++  ++   + L +  +P R
Sbjct: 170 EARDFASHIHRRVYEDFM--LNVLAMDVVPGR 199


>gi|145629552|ref|ZP_01785350.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145632888|ref|ZP_01788621.1| threonyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|145639038|ref|ZP_01794646.1| threonyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145641382|ref|ZP_01796961.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144978395|gb|EDJ88159.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|144986544|gb|EDJ93110.1| threonyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|145272010|gb|EDK11919.1| threonyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145273925|gb|EDK13792.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
 gi|309750996|gb|ADO80980.1| Threonyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|296808933|ref|XP_002844805.1| glycyl-tRNA synthetase 1 [Arthroderma otae CBS 113480]
 gi|238844288|gb|EEQ33950.1| glycyl-tRNA synthetase 1 [Arthroderma otae CBS 113480]
          Length = 654

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E ++      + +G++ +P +VAP K+ L+ +  H    +   +++
Sbjct: 502 SFGIG--RILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTHASF-QPLIQRL 558

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG +++  D LG P  +    + V D+   ++ R T  +  
Sbjct: 559 TLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRDRDTTKQVR 618

Query: 429 MSLEEVIN 436
            S +E+ N
Sbjct: 619 ASEDEICN 626



 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 236 QSMPFASACIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 280


>gi|33322995|gb|AAQ07234.1|AF496542_1 threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 107

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +     +++   G   +  P L + D +  SG +D Y ++M    
Sbjct: 1   GLPYWMPKGATIRRIIERYXXDKEVAAGXXHVYTPVLMNLDAYKTSGHWDHYREDMFPPM 60

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           D  +  M+   P +      I++ HI+SYR LP    ++ +  R
Sbjct: 61  DMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHR 104


>gi|16273277|ref|NP_439518.1| threonyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260580800|ref|ZP_05848626.1| threonyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174548|sp|P43014|SYT_HAEIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1574199|gb|AAC23014.1| threonyl-tRNA synthetase (thrS) [Haemophilus influenzae Rd KW20]
 gi|260092617|gb|EEW76554.1| threonyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|156717366|ref|NP_001096223.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Xenopus
           (Silurana) tropicalis]
 gi|123909108|sp|Q0V9S0|SYTC2_XENTR RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|111307891|gb|AAI21418.1| tarsl2 protein [Xenopus (Silurana) tropicalis]
          Length = 814

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 80/413 (19%), Positives = 156/413 (37%), Gaps = 53/413 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   I+ E       E++ P + ++ LW  SG +  Y + 
Sbjct: 427 HDLSPGSCFFLPRGAHIYNTLTDFIKGEYQIRNFTEVASPNIYNSKLWEMSGHWQHYSEN 486

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    +   +     P +      +F    +S+R LP  F    +  R+EL     G+ R
Sbjct: 487 MFSF-EVEKETFALKPMNCPGHCLMFGHRPRSWRELPLRFADFGVLHRNELSGTLSGLTR 545

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
            R F   DA+ F  T +  +   N        ++   G  +  +   + P    G+    
Sbjct: 546 VRRFQQDDAHIF-CTMDQIQEEMNGCLQFLQSVYKVFGF-TFQLHLSTRPENYLGE---- 599

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APYAATSDVH 263
            I + +  E Q+                      SLN   E W       A Y    D+ 
Sbjct: 600 -IEIWNEAEKQLES--------------------SLNQFGEPWKLNPGDGAFYGPKIDI- 637

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             K+ D++    + +   ++    F    +++L  +   K  D K   V +    +G++ 
Sbjct: 638 --KIKDAIGRYHQCATIQLD----FQLPIRFNL--TYVSKDGDDKKRPVIIHRAILGSVE 689

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWD 382
            + A++  ++ GK   WP  ++P ++ +I +  + D+  +  C+ ++        D+   
Sbjct: 690 RMIAILCENYGGK---WPFWLSPRQVMVIPVGPSCDEYAQQVCKDVFEAGFMAEVDL--- 743

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           D    +  +   A L      ++VG K  +DS V ++ R   +  ++ L   I
Sbjct: 744 DHSCTLNKKIRNAQLAQCNFILVVGEKEKTDSAVNVRTRDNKVHGEILLTSAI 796


>gi|319776351|ref|YP_004138839.1| threonyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|329123506|ref|ZP_08252070.1| threonine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317450942|emb|CBY87169.1| threonyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327471088|gb|EGF16543.1| threonine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|221231277|ref|YP_002510429.1| seryl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|254783052|sp|B8ZLH8|SYS_STRPJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|220673737|emb|CAR68236.1| seryl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 424

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 22/192 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G+Y  + ++   L+D N    +  PT E  + + +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGQYPKFKEDTFELSDTN---FVLIPTAEVPLANYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNLP 315

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 316 YRVVALSTGDMG 327


>gi|319897020|ref|YP_004135215.1| threonyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317432524|emb|CBY80883.1| threonyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +  +    E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T +  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGSD 431


>gi|254584943|ref|XP_002498039.1| ZYRO0G00704p [Zygosaccharomyces rouxii]
 gi|238940933|emb|CAR29106.1| ZYRO0G00704p [Zygosaccharomyces rouxii]
          Length = 681

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHD 334
           + RGI+     + G  +S   + + +   G DH    V   S+G+ + RV+  +     D
Sbjct: 396 TGRGIQGATSHHLGQNFSKMFNVSVENPLGPDHPKVNVFQNSWGL-STRVIGVMTMIHSD 454

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWD-DMGE 386
            KG++ P  V+ ++  ++ +    +   +       +  +I +RL K G   F D +   
Sbjct: 455 NKGLVIPPRVSQYQAVVLPVGITKKTTEEQRAHIHSSAREIESRLKKAGVRAFGDYNDNY 514

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             G +FA  +L G PL++  G K +  ++V +  R
Sbjct: 515 TPGWKFAQYELKGIPLRLESGPKDIESNQVTVVRR 549



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+SYR+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 284 PTSETVMYPYYAKWIRSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTK 343

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
             ++    ++   Y  ++  L
Sbjct: 344 ADAEEEVLQILDHYAGVYEEL 364


>gi|164657552|ref|XP_001729902.1| hypothetical protein MGL_2888 [Malassezia globosa CBS 7966]
 gi|159103796|gb|EDP42688.1| hypothetical protein MGL_2888 [Malassezia globosa CBS 7966]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+G+G  R+  A++E S         +G++  P  VAPFK+ ++ I +++Q+   A   I
Sbjct: 515 SFGLG--RIFYALLEHSFWAREEDKERGVLSLPPLVAPFKVLIVPISSNEQLSPMA-RDI 571

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L  +      DD    IG ++A  D LG P    +    VS   + ++ R T ++  
Sbjct: 572 SKKLRSLNIASRIDDSNATIGRRYARNDELGTPFACTIDFASVSKGTITLRERDTTLQRI 631

Query: 429 MSLEEVINYAS 439
            ++++VI+  +
Sbjct: 632 GTVDQVIDVVA 642



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF   QI   FR+E+ PR G++R REF M +   F + PE   H
Sbjct: 255 VPFASAQIGKSFRNEISPRAGLLRVREFTMAEIEHF-VDPENKSH 298


>gi|1464742|gb|AAB04939.1| threonyl-tRNA synthetase [Homo sapiens]
          Length = 712

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LW+ SG +  Y 
Sbjct: 322 FFHELSPGSCFFLPKGVYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYS 381

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M    +   +     P +    + +F    +S+R LP          R+EL     G+
Sbjct: 382 ENMFSF-EVEKELFALKPMNCPGHSLMFDHRPRSWRELPLRLADFGGLHRNELSGALTGL 440

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 441 TRVRRFQQDDAHIF 454


>gi|56421108|ref|YP_148426.1| histidyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81675744|sp|Q5KWS8|SYH_GEOKA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56380950|dbj|BAD76858.1| histidyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 426

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 163/454 (35%), Gaps = 68/454 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  +G    LP   +    V  I R   +R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDVLPGDSEKWQYVEHIARSLCSRYGYQEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H +    N P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPNQPLKLYYSGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPM---------- 195
           G  R R+F+      F +   GS       ++    + I+  LGLK I +          
Sbjct: 120 G--RFRQFV-----QFGVEALGSSDPAIDAEVMALAMHIYEALGLKRIRLVINSLGDLDS 172

Query: 196 -RAESGPIGGDLSHEFIVLADTGETQVF--------CSKD-----------FMDFPIPSE 235
            RA    +    S+    L    +T++         C KD            +D+     
Sbjct: 173 RRAHREALVRHFSNRIHELCPDCQTRLHTNPLRILDCKKDRDHELMATAPSILDYLNDES 232

Query: 236 NTDFDDI---ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              F+ +   ++   I     A      D +N   F+ + E +   A     G   Y G 
Sbjct: 233 RAYFEKVKQYLTALGIPFVIDARLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYNGL 292

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISL 351
              +          G      +G + +   R++AA+     D +G+  P +S     +  
Sbjct: 293 VQEI----------GGPETPGIG-FALSIERLLAAL-----DAEGVELPVESGLDCYVVA 336

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +  +A D+  R     +YA L + G  V  D +G ++ +Q   AD LG     I+G + +
Sbjct: 337 VGERAKDEAVR----LVYA-LRRSGLRVDQDYLGRKLKAQLKAADRLGASFVAIIGDEEL 391

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              +  +KH  +G + ++ L E+ ++   R    
Sbjct: 392 ERQEAAVKHMASGEQTNVPLGELAHFLHERIGKE 425


>gi|281201813|gb|EFA76021.1| prolyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 552

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M   +++ I+S+R+LP    Q     R E +     +RSREFL ++ ++   T 
Sbjct: 156 PTSETIMYPAYKNWIRSHRDLPLKLNQWVNVVRWEFKRPVPFLRSREFLWQEGHTAFATK 215

Query: 168 EGSKHSYNKMFVSYLRIFHRL-------GLKS 192
           E +     ++   Y R++  L       GLKS
Sbjct: 216 EEADKEVLQILRLYKRVYEELLAVPVVEGLKS 247



 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 5/172 (2%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R I+       G  +S      F+  +         S+G+   R +  +I    D K
Sbjct: 267 TNGRAIQAATSHCLGQNFSKMFGIEFEDENNAKALAWQNSWGL-TTRTIGVMIMVHGDDK 325

Query: 337 GIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-F 392
           G++ P  +AP ++ ++ +   D    +     +++  RL + G     D+       Q +
Sbjct: 326 GLVLPPRIAPIQVVVVPLYFKDFDSAILDKKADEVVQRLKEAGIRAHLDNRTNYNPRQKY 385

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +L G P++V VG K +    V    R  G++E ++  ++I  A     N
Sbjct: 386 IHWELKGVPIRVEVGPKDLEKDVVMFCRRDNGVKESVANADLITTAKSTLDN 437


>gi|218782927|ref|YP_002434245.1| prolyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|218764311|gb|ACL06777.1| Prolyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 505

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +I  PT E ++ D F   + SYR+LP    Q     R E+RPR   +R+ EFL ++ ++ 
Sbjct: 120 LIVRPTSETIIGDSFSRWVSSYRDLPILLNQWANVVRWEMRPRV-FLRTAEFLWQEGHTV 178

Query: 164 DLTPEGSKHSYNKMFVSY 181
             T E +      M   Y
Sbjct: 179 HATSEEAYERTEMMLNVY 196



 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  +++     F+ A+GK+ Y    S+G  + R++  +I    D  G++
Sbjct: 236 KALQAGTSHFLGQNFAVASEIKFQSAEGKEEYAWTTSWG-ASTRLMGGLIMVHSDDDGLV 294

Query: 340 WPDSVAPFKISLINI 354
            P  +AP ++ L+ I
Sbjct: 295 LPPRIAPAQVVLMPI 309


>gi|12045236|ref|NP_073047.1| threonyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351178|sp|P47615|SYT_MYCGE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3844963|gb|AAC71602.1| threonyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078630|gb|ABY79248.1| threonyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 564

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 152/391 (38%), Gaps = 58/391 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WL  G    + +   +  +Q   G   +  P L + +L+  SG Y  Y ++M    
Sbjct: 187 GLPIWLAKGTTLRNIIGNFVHHQQLLFGFNTVCSPVLANIELFKISGHYQHYKEDMFPAI 246

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-------GVM 150
             + +AM+  P        IF+    SY+ +P  F +      D +  RF       G+ 
Sbjct: 247 KLDSQAMMLRPMTCPHHCLIFKQKRYSYKKMPQRFSE------DSILHRFEASGGLIGLE 300

Query: 151 RSREFLMKDAYSF---DLTPEGSKHSYN---KMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           R R   + D + F   D      K+++N   K+   +  IF R+ L     + +S  I  
Sbjct: 301 RVRCMTLLDNHIFCRADQIKSEIKNAFNLIQKVNKKFGFIFDRIDLSLHDPKNQSKFIDN 360

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                   L    E+Q       M+  +   N  +   I          A Y    D   
Sbjct: 361 P------GLWRESESQ-------MENVLKDLNIQYQKEIGA-------AAFYGPKIDFQF 400

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           + +F      K ++   I++   F    K+ L      K    K   + +G  G    R 
Sbjct: 401 KTIF-----KKMITIATIQLD--FLLPEKFDLTYIDK-KNTLKKPVIIHVGIIGTYE-RF 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           +AA++E +  G   +W   +AP +  +I  NI+ H +    A +K+Y +L K    V  D
Sbjct: 452 IAALLEKT-SGNFPLW---LAPVQAVIIPVNIQKHLK----AAKKLYNKLLKENIRVNLD 503

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D  +++  +   A +   PLQ+IVG K + +
Sbjct: 504 DNQDRLAKKVRQAIIEKIPLQLIVGDKEIEN 534


>gi|66821029|ref|XP_644046.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|75016778|sp|Q8MP20|SYTC2_DICDI RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21240667|gb|AAM44378.1| hypothetical protein [Dictyostelium discoideum]
 gi|60472212|gb|EAL70165.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 698

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G K  + +   +R E  + G  E+  P + +  LW  SG +D+Y   
Sbjct: 296 HPFSPGSCFFLPHGTKIYNKLLQFLRLEYRKRGYQEVISPNIYNQKLWETSGHWDNYKDN 355

Query: 93  MLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           M     D    ++   P +      ++    +SY+ LP       +  R+E      G+ 
Sbjct: 356 MFSFECDHTQYSL--KPMNCPGHCLMYAHRARSYKELPMRIADFGVLHRNETHGSLSGLT 413

Query: 151 RSREFLMKDAYSFDLTPE 168
           R R F   DA+ F  TP+
Sbjct: 414 RVRRFQQDDAHIF-CTPD 430


>gi|323692292|ref|ZP_08106531.1| threonyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323503617|gb|EGB19440.1| threonyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 653

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P G K +  +   + + E N  G I    P +  +DL+  SG +D Y   M  
Sbjct: 260 QGLPLLMPNGVKIVQRLQRWVEDLEDNEWGYIRTKTPLMAKSDLYKISGHWDHYKDGMFV 319

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      ++   P        ++++   SYR LP  + +    FR+E      G+ R 
Sbjct: 320 LGDEETDKEVFALRPMTCPFQYYVYKNDQHSYRELPLRYSETSTLFRNEDSGEMHGLTRV 379

Query: 153 REFLMKDAY 161
           R+F + + +
Sbjct: 380 RQFTISEGH 388


>gi|323487567|ref|ZP_08092859.1| hypothetical protein HMPREF9474_04610 [Clostridium symbiosum
           WAL-14163]
 gi|323399124|gb|EGA91530.1| hypothetical protein HMPREF9474_04610 [Clostridium symbiosum
           WAL-14163]
          Length = 653

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P G K +  +   + + E N  G I    P +  +DL+  SG +D Y   M  
Sbjct: 260 QGLPLLMPNGVKIVQRLQRWVEDLEDNEWGYIRTKTPLMAKSDLYKISGHWDHYKDGMFV 319

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      ++   P        ++++   SYR LP  + +    FR+E      G+ R 
Sbjct: 320 LGDEETDKEVFALRPMTCPFQYYVYKNDQHSYRELPLRYSETSTLFRNEDSGEMHGLTRV 379

Query: 153 REFLMKDAY 161
           R+F + + +
Sbjct: 380 RQFTISEGH 388


>gi|169621698|ref|XP_001804259.1| hypothetical protein SNOG_14060 [Phaeosphaeria nodorum SN15]
 gi|160704311|gb|EAT78685.2| hypothetical protein SNOG_14060 [Phaeosphaeria nodorum SN15]
          Length = 568

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 117/332 (35%), Gaps = 67/332 (20%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E  M   F   I+S+R+LP    Q     R E +     +RSREFL ++ 
Sbjct: 153 EKPVAVRPTSETAMYPYFARKIQSHRDLPLKLNQWNNVVRWEFKHPMPFIRSREFLWQEG 212

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           ++  LT + +     ++   Y                       D+  + + +     T+
Sbjct: 213 HTAHLTKKEASDEVLQILDWY----------------------SDVYQDLLAVPVVKGTK 250

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV---HNEKLFDSLPENKRV 277
               K    FP     T  +  I       Q     AATS     H  K+F+   E+   
Sbjct: 251 TVNEK----FPGADYTTTIEGFIPATGRGIQ-----AATSHCLGQHFSKMFNITVEDPNA 301

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
              G +  H+  +   + L                          R +  +I +  D +G
Sbjct: 302 KEAG-KSEHVHVWQNSWGL------------------------TTRSIGVMILTHGDNRG 336

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM--------GEQIG 389
           ++ P  VA  ++ +I +    ++  +  E +Y+++ K+  D+    +        G   G
Sbjct: 337 LVIPPRVAEIQVVVIPVGVSAKMSAEDKESLYSKVKKISEDLVEAGVRVETDYREGYSPG 396

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +F   +L G PL++  G K      V    R
Sbjct: 397 WKFNDWELKGIPLRIEFGPKDAEKGVVTTSRR 428


>gi|297816202|ref|XP_002875984.1| hypothetical protein ARALYDRAFT_323549 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297321822|gb|EFH52243.1| hypothetical protein ARALYDRAFT_323549 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 496

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RG++       G  ++      +    G+   V   S+   + R +  +I    D KG
Sbjct: 211 TGRGVQGATSNCLGQNFAKTYEINYVDEKGETATVWQNSWTY-STRTIGVMIMIHGDDKG 269

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQF 392
           +I P  VAP ++ +I +    A+ Q   DAC    + L + G     +D+G++   G ++
Sbjct: 270 LILPPKVAPLQVVVIAVPCKNANIQRIYDACTATVSALCEAGIRAE-EDLGDEYTPGWKY 328

Query: 393 AVADLLGFPLQVIVGSKFVSDSKV 416
           +  ++ G PL++ +G + + + +V
Sbjct: 329 SDWEMKGVPLRIEIGPRDLENDQV 352


>gi|148256517|ref|YP_001241102.1| threonyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|146408690|gb|ABQ37196.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Bradyrhizobium
           sp. BTAi1]
          Length = 688

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVP 72
           +AE   H+ + R   + H  +   G+  W P G      + A +R  +   G   E++ P
Sbjct: 270 EAEKRDHRKLGRELDLFHFQEEGPGVVFWHPKGWSIFQALIAYMR--RRLAGEYDEVNAP 327

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRN 127
            +    LW  SG ++ Y + M       D+A         P +      IF+  +KSYR+
Sbjct: 328 QILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKHGLKSYRD 387

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 388 LPLRLAEFGVVHRYEASGAMHGLMRVRGFTQDDAHIF 424


>gi|326471466|gb|EGD95475.1| prolyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 604

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 189 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 248

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E +     ++   Y  ++  L
Sbjct: 249 HTAHLTREEAHTEVLQILQHYAHVYEEL 276


>gi|322697146|gb|EFY88929.1| threonyl-tRNA synthetase, putative [Metarhizium acridum CQMa 102]
          Length = 759

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 39/167 (23%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G +  + + A++RE+    G  E+  P +  A LW  SG +D Y ++M R
Sbjct: 318 SPGSPFFLPHGTRIFNAIQAMLREQYWMRGYDEVHSPLMYDAQLWKTSGHWDHYQEDMFR 377

Query: 96  LA---------------------DRNDKAMIYGPTHEEVMTD-----------------I 117
           +                      D N  A   G   E    +                 +
Sbjct: 378 VPLKHTHGAAPDASAASGPDASKDANKPADKDGENAEVAKLEQERLFALKPMNCPGHALM 437

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           F S  +SYR+LP+      +  R+E      G+ R R+F   DA+ F
Sbjct: 438 FASEERSYRSLPWRVADFSVLHRNEASGALTGLTRVRKFQQDDAHIF 484


>gi|76801848|ref|YP_326856.1| threonyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|121731906|sp|Q3IRE7|SYT_NATPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|76557713|emb|CAI49296.1| threonine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 642

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 2/127 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+  L  +   + +  +  G   +  P L   +LW +SG Y++Y  +M  L 
Sbjct: 262 GLPLYHPNGKAVLRELEDFVDQLNDDQGYEFVETPHLFRTELWKQSGHYENYVDDMF-LL 320

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D ND+     P +      IF     SYR+LP  + +    +R E R    G+ R   F 
Sbjct: 321 DVNDEEYGLKPMNCPGHATIFNQGNWSYRDLPVRYAENGKVYRKEQRGELSGLSRVWAFT 380

Query: 157 MKDAYSF 163
           + D + F
Sbjct: 381 IDDGHLF 387


>gi|158422571|ref|YP_001523863.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|158329460|dbj|BAF86945.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 636

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 11/182 (6%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W P G      + + +R  + +    E++ P +    LW  SG +  Y + 
Sbjct: 235 QEEGPGVVFWHPKGWSLFQGLVSYMRR-RLKADYNEVNAPQVLDKSLWETSGHWGWYKEN 293

Query: 93  MLRLADR-----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M ++        +++     P +      IF+  +KSYR+LP    +     R E     
Sbjct: 294 MFKVQSAGEETGDERVFALKPMNCPGHVQIFKHGLKSYRDLPLRLAEFGAVHRYEPSGAL 353

Query: 148 -GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IG 203
            G+MR R F   DA+ F  T E       K+    L  +   G + I ++  + P   +G
Sbjct: 354 HGLMRVRGFTQDDAHVF-CTEEQMAAECLKINDLILSTYADFGFEEITVKLSTRPEKRVG 412

Query: 204 GD 205
            D
Sbjct: 413 SD 414


>gi|302667978|ref|XP_003025567.1| hypothetical protein TRV_00207 [Trichophyton verrucosum HKI 0517]
 gi|291189682|gb|EFE44956.1| hypothetical protein TRV_00207 [Trichophyton verrucosum HKI 0517]
          Length = 613

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 188 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 247

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E +     ++   Y  ++  L
Sbjct: 248 HTAHLTREEAHTEVLQILQHYAHVYEEL 275


>gi|116207946|ref|XP_001229782.1| hypothetical protein CHGG_03266 [Chaetomium globosum CBS 148.51]
 gi|88183863|gb|EAQ91331.1| hypothetical protein CHGG_03266 [Chaetomium globosum CBS 148.51]
          Length = 677

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 13/116 (11%)

Query: 316 SYGIGAMRVVAAVIESSH---------DGKGII-WPDSVAPFKISLINIKAHDQVCRDAC 365
           S+GIG  R++ +++E ++         + +G++ +P +VAP K+ ++ + +H      A 
Sbjct: 517 SFGIG--RILYSLMEHNYWTRASEGGDEARGVLSFPPAVAPTKVLIVPLSSHKDFA-PAV 573

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            K+  +L   G     DD    IG +++  D LG P  + V  + V D  + ++ R
Sbjct: 574 RKLSQKLRSAGISSRVDDSSASIGKRYSRNDELGTPFGITVDFQTVKDDTITLRER 629



 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            +PF    I   +R+E+ PR G++R REFLM +   F + PEG K  +
Sbjct: 252 QMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHF-VDPEGHKKHH 298


>gi|326481769|gb|EGE05779.1| prolyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 604

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 189 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 248

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E +     ++   Y  ++  L
Sbjct: 249 HTAHLTREEAHTEVLQILQHYAHVYEEL 276


>gi|299471018|emb|CBN78879.1| threonine--tRNA ligase [Ectocarpus siliculosus]
          Length = 704

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  S G   +LP G +  + +   IR E  + G  E++ P + + DLW +SG    Y  
Sbjct: 410 FHPLSPGSAFFLPHGTRIYNRLMEFIRSEYWKRGYEEVTTPNMYNMDLWEQSGHAAHYKD 469

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            M R      +  +  P +      +F   +KS+R LP  +    +  R+E+
Sbjct: 470 AMFRFPVEGQEFGLK-PMNCPGHCIMFSQGVKSWRELPLRYADFGVLHRNEV 520


>gi|219851699|ref|YP_002466131.1| glycyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219545958|gb|ACL16408.1| glycyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 573

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 109 THEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           T + + TD F   ++ YR+ LPF   QI   +R+E+ PR G++R REF   +A  F + P
Sbjct: 165 TAQGIFTD-FTRLLRFYRDKLPFGAVQIGKSYRNEISPRQGMIRLREFTQAEAEIF-VHP 222

Query: 168 EGSKHSYNKMFVSY 181
           E  KH + + +  Y
Sbjct: 223 EQKKHPHFERYADY 236


>gi|290475547|ref|YP_003468435.1| threonine tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289174868|emb|CBJ81669.1| threonine tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 642

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 72/395 (18%), Positives = 149/395 (37%), Gaps = 44/395 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +    R +       E+  P +    LW ++G +++Y +
Sbjct: 256 MQEEAPGMAFWHNDGWTIFRELETFARVKLKEYHYQEVKGPFMMDRILWEKTGHWENYKE 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +  +  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 HMFTTSSENREYCV-KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F    +  +   N + + Y  +++  G + + ++  + P         
Sbjct: 375 RVRGFTQDDAHIFCTEDQIHQEVSNCIKMIY-DVYNTFGFEKVVVKLSTRP--------- 424

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-KLFD 269
                  E ++   K +          D  + +  + I  ++     A      E  L+D
Sbjct: 425 -------EKRIGTEKQW-----DEAEADLAEALKQSGIEFEYQPGEGAFYGPKIEFTLYD 472

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            L        R  + G +      +SLP  ++A++ G + +    V +    +G++    
Sbjct: 473 CLD-------RAWQCGTV---QLDFSLPARLNASYVGENNERKVPVMIHRAVLGSLERFI 522

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++   + G    +P  +AP ++ ++NI           +++  +L   G     D   E
Sbjct: 523 GILTEEYAG---FFPTWLAPQQVVVMNITDGQA---GYVQELVKKLQDAGIRAKADLRNE 576

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +IG +     L   P  ++ G K V   K  ++ R
Sbjct: 577 KIGFKIREHTLRRVPYMLVCGDKEVESGKTSVRTR 611


>gi|260831390|ref|XP_002610642.1| hypothetical protein BRAFLDRAFT_117885 [Branchiostoma floridae]
 gi|229296009|gb|EEN66652.1| hypothetical protein BRAFLDRAFT_117885 [Branchiostoma floridae]
          Length = 1596

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 73/337 (21%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   IKS+R+LP  + Q     R E +     +R+REFL ++ +S   + 
Sbjct: 1202 PTSETVMYPAYAKWIKSHRDLPIKYNQWNNVVRWEFKHPQPFLRTREFLWQEGHSAFASK 1261

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            + +      +   Y R++    L +IP                ++     E + F   D 
Sbjct: 1262 DEADEEVMAILELYARVYE--DLMAIP----------------VIRGRKTEKEKFAGGD- 1302

Query: 228  MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                                        Y  T +V+              S R I+    
Sbjct: 1303 ----------------------------YTTTVEVYIS-----------ASGRAIQGATS 1323

Query: 288  FYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
             + G  +S      ++  +  G+  +V   S+GI   R +  ++    D KG++ P  VA
Sbjct: 1324 HHLGQNFSKMFEIVYEDPEKPGEKKFVYQNSWGI-TTRTIGVMVMVHGDNKGLVVPPVVA 1382

Query: 346  PFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVAD 396
              ++ +I         +   Q     C++    L   G     DD+ +    G +F   +
Sbjct: 1383 RDQVVVIPCGVTASLPEEDKQKLMKKCQEYRQALRDAGIRAT-DDLRDNYSPGWKFNHWE 1441

Query: 397  LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            L G P+++ VG + +  ++     R TG  E M+L E
Sbjct: 1442 LKGTPIRMEVGPRDMKQNQFVAVRRDTG--EKMTLAE 1476


>gi|148655910|ref|YP_001276115.1| prolyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|166980153|sp|A5UU62|SYP_ROSS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148568020|gb|ABQ90165.1| prolyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 480

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G     G  ++     T+        Y    S+G+ + R++ A+I +  D +G+
Sbjct: 222 GRALQAGTSHNLGQNFARAFDITYTDQQNTIQYAWTTSWGV-STRLIGALIMTHSDDEGL 280

Query: 339 IWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFA 393
           + P  +AP ++ ++ I  +D    V  +A +++ A     G   F  D  + +  G +F 
Sbjct: 281 VIPPRLAPTQVVVVPIYRNDAERSVVMEAVQRMTAEWK--GRLRFKIDDRDNLTPGFKFN 338

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             +L G P++V +G K +    V I  R    RE  S 
Sbjct: 339 EWELKGVPIRVEIGPKDIEKGSVAIARRDQPGREGKSF 376



 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 19/174 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L I+Q+    A++A +  +++ G I     G   W  + +   D + A        
Sbjct: 14  SQWYLDIVQQ----ADLADYAEVVK-GCIVFKPTGYAIWEAIQRGLDDRIKA-------- 60

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRL--ADRNDKAMIY--GPTHEEVMTDIF 118
           TG +    P L   + L  E+   + +  E+  +  A   D A  Y   PT E ++   +
Sbjct: 61  TGHVNAYFPLLIPKSFLMKEAEHVEGFAPEVAEVTRAGGEDLAEPYVIRPTSETIIGYFY 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
              ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++ 
Sbjct: 121 SKWVRSYRDLPLLINQWANVMRWEMRTR-PFLRTTEFLWQEGHTVHATEEDAER 173


>gi|327305829|ref|XP_003237606.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326460604|gb|EGD86057.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 607

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 188 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 247

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E +     ++   Y  ++  L
Sbjct: 248 HTAHLTREEAHTEVLQILQHYAHVYEEL 275


>gi|329116627|ref|ZP_08245344.1| serine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326907032|gb|EGE53946.1| serine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 425

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 8/150 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N    
Sbjct: 169 LGARLERAIYNFMLDEHGKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELKDTN---F 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
           +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F   + 
Sbjct: 226 VLIPTAEVPLTNYYRGEILEGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             F   PE S     KM  +   I  +L L
Sbjct: 286 VKF-AKPEESYEELEKMTANAENILQKLNL 314


>gi|149200279|ref|ZP_01877300.1| threonyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149136643|gb|EDM25075.1| threonyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 603

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 19/173 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG+  W+P G    D +    RE + + G   +S P + S  L+  SG    Y   M   
Sbjct: 206 KGLALWMPNGTIIRDEIEKYAREMEMKYGYQRVSTPHIASEKLFQTSGHLPYYADSMFPP 265

Query: 97  ADRND------------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            + N+            KAM   P H      I+ +  +SY+ LP+   +    +R E  
Sbjct: 266 MELNEGDDAENSEKYYLKAM-NCPYHHL----IYSARPRSYKELPYRLCEYGTCYRYEKS 320

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
               G++R R   M DA+ + LT +  +  +  M   Y+  +          R
Sbjct: 321 GELSGLLRVRCMTMNDAHVY-LTEDQFEEEFRSMVKMYMEFYETFKFSDYSFR 372


>gi|119494491|ref|XP_001264141.1| threonyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119412303|gb|EAW22244.1| threonyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 530

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 81  YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 140

Query: 95  RLADRNDKAMIYGPTHEEVMTD-----------IFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R       G T E+               +F+S   SYR LP  +       R+E+
Sbjct: 141 EVKGRGATGEADGETGEDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEI 200

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 201 SGALSGLTRVRRFHQDDGHIF 221


>gi|119872407|ref|YP_930414.1| glycyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|119673815|gb|ABL88071.1| glycyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 585

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 320 GAMRVVAAVIESS---HDGKGII-WPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSK 374
           G  R++  V+E +    +G+  +  P  +AP  + ++ I K  D V  +   ++  RL  
Sbjct: 444 GLDRILYVVLEHAVAIENGRVYLRLPPDIAPVAVCILPIVKRADYV--EIGRRLMRRLGD 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V ++D G  IGS++A  D +G PL V +  K   D  V I+ R T  +  + LE+V
Sbjct: 502 EGFTVIYEDEG-TIGSRYAYCDEIGTPLAVTIDEKTPVDETVTIRDRDTKRQVRIKLEKV 560

Query: 435 INYAS 439
             + +
Sbjct: 561 PTFVA 565


>gi|302505226|ref|XP_003014834.1| hypothetical protein ARB_07395 [Arthroderma benhamiae CBS 112371]
 gi|291178140|gb|EFE33931.1| hypothetical protein ARB_07395 [Arthroderma benhamiae CBS 112371]
          Length = 624

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 188 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEG 247

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT E +     ++   Y  ++  L
Sbjct: 248 HTAHLTREEAHTEVLQILQHYAHVYEEL 275


>gi|223984594|ref|ZP_03634721.1| hypothetical protein HOLDEFILI_02017 [Holdemania filiformis DSM
           12042]
 gi|223963441|gb|EEF67826.1| hypothetical protein HOLDEFILI_02017 [Holdemania filiformis DSM
           12042]
          Length = 590

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 162/419 (38%), Gaps = 55/419 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M+ ++  G   +LP G    + +     EE  + G   +  P + S DLW  SG + +Y 
Sbjct: 206 MMSEYGPGFPFFLPNGMILRNVLENYWYEEHTKEGYQFIKTPIMLSKDLWELSGHWANYQ 265

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             M      +D+     P +      ++++ + SY++LP    ++    R E      G+
Sbjct: 266 DNMYTTM-IDDREFAIKPMNCPGGILVYKNGLHSYKDLPLRIGELGQVHRHEASGALNGL 324

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSH 208
            R R F   DA+ F    E    S     ++++ R++   G                LS+
Sbjct: 325 FRVRTFTQDDAHIF--MREDQIESEVVRLINFIDRVYSVFG----------------LSY 366

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E I L+   E +   S +  D    +             I     A Y    D H   L 
Sbjct: 367 E-IELSTRPEKKYIGSIEIWDKAEAALEAACHAAGKACKINPGDGAFYGPKLDFH---LT 422

Query: 269 DSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAM 322
           DSL             G ++  GT     +LP     T+  ADG K   + +     G++
Sbjct: 423 DSL-------------GRVWQCGTIQLDMNLPERFDLTYVDADGSKKRPIMLHRVIFGSI 469

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++   + G   +W   +AP ++ ++ +  H +   D  +++ A L   G  V  D
Sbjct: 470 ERFIGILIEHYAGAFPMW---LAPQQVVIVPV--HHERHLDYAKELEAMLLAKGVRVKVD 524

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI-----KHRLTGIREDMSLEEVIN 436
              E++G +   A     P+Q++VG   V ++   +     K  +T  +E++ LE ++N
Sbjct: 525 GRNEKLGYRVREAQTHKIPMQIVVGDGEVENNTATVRRYGKKDSVTLSKEEL-LESILN 582


>gi|187736219|ref|YP_001878331.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426271|gb|ACD05550.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 159/440 (36%), Gaps = 68/440 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G+  W P G     ++   I EE ++ G  ++  P +   DL+  SG +  Y +    
Sbjct: 221 GQGLILWKPKGALIRRSLQDFITEELDKLGYSQVYTPNIGKLDLYRTSGHFPYYQESQYA 280

Query: 96  ------------------------LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
                                   LA    +  +  P +      I+ +   SYR+LP  
Sbjct: 281 PIPERDAMEKLSQEGASCAELFNGLATGTIEGYMLKPMNCPHHIKIYANDAHSYRDLPVR 340

Query: 132 FYQIQLKFRDELRPRFGVM-RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +    +R E     G M R R F   DA+ F  TP+       +       IF  LG+
Sbjct: 341 LAEFGTVYRWEQSGELGGMTRVRGFTQDDAHIF-CTPDQLAGEIRQCLGIVKTIFGTLGM 399

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +R              + + D        S  ++  P   EN D  +  +L    E
Sbjct: 400 TDYRVR--------------LSMRDPE------SDKYVGSP---ENWDKAEQ-ALREAAE 435

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGA 305
              A Y   S+   E  F   P+   +    I  G  +  GT    Y+LP      + GA
Sbjct: 436 WLGADY---SEEAGEAAFYG-PKIDFIVRDAI--GREWQLGTVQVDYNLPERFDLHYTGA 489

Query: 306 DGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D K H  V +     G+M     ++    +GK   W   ++P ++ ++ I   D+V  D 
Sbjct: 490 DNKPHRPVMVHRAPFGSMERFTGLLIEHFEGKFPTW---LSPEQVRVLPIS--DKVT-DV 543

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                  L+  G  V  D+  ++IG++   A L   P  +++G +   D  V ++HR  G
Sbjct: 544 AAAHRTALAARGVRVTVDETPDKIGAKIRNARLDRVPYMLVLGQREAEDGTVSVRHRDKG 603

Query: 425 IREDMSLEEVINYASHRFSN 444
               M  E+  +  +   + 
Sbjct: 604 DLGAMPFEQFADLVAREIAE 623


>gi|68070445|ref|XP_677134.1| threonine--tRNA ligase [Plasmodium berghei strain ANKA]
 gi|56497130|emb|CAH95381.1| threonine--tRNA ligase, putative [Plasmodium berghei]
          Length = 780

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W   G K  + +   +R+E       E+  P + S DLW  SG Y +Y K  + + +  +
Sbjct: 351 WFAHGAKIYNKLIEFMRKEYRIRKYEEVITPNIFSCDLWKTSGHYQNY-KNCMFIFNIEN 409

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           K     P +      IF+    SY++LP       +  R+E+     G+ R R F   DA
Sbjct: 410 KEWGMKPMNCPGHCLIFKQLNASYKSLPIRLADFGVLHRNEITGSLSGLTRVRRFQQDDA 469

Query: 161 YSF 163
           + F
Sbjct: 470 HIF 472


>gi|295660511|ref|XP_002790812.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226281365|gb|EEH36931.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 655

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++A ++E  +      + +G++ +P  VAP K+ L+ + +++   +    ++
Sbjct: 503 SFGIG--RILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPL-SNNPSFQPLVHRL 559

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 560 TLKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRERDTTKQVR 619

Query: 429 MSLEEV 434
            S EE+
Sbjct: 620 ASEEEI 625



 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +++PF    I   FR+E+ PR G++R REFLM +   F     G KH
Sbjct: 237 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHFVDPDNGKKH 283


>gi|146339967|ref|YP_001205015.1| threonyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|146192773|emb|CAL76778.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Bradyrhizobium sp. ORS278]
          Length = 688

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 17  DAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVP 72
           +AE   H+ + R   + H  +   G+  W P G      + A +R  +   G   E++ P
Sbjct: 270 EAEKRDHRKLGRELDLFHFQEEGPGVVFWHPKGWSIFQALIAYMR--RRLAGDYDEVNAP 327

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRN 127
            +    LW  SG ++ Y + M       D+A         P +      IF+  +KSYR+
Sbjct: 328 QILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKHGLKSYRD 387

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 388 LPMRLAEFGVVHRYEASGAMHGLMRVRGFTQDDAHVF 424


>gi|15965178|ref|NP_385531.1| threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|22654127|sp|Q92QB0|SYT_RHIME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15074358|emb|CAC46004.1| Probable threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
          Length = 661

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 93/448 (20%), Positives = 163/448 (36%), Gaps = 62/448 (13%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L E    AE   H+ + R   + H  +   G+  W   G +   ++ A +R  +  
Sbjct: 235 YLHVLAE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRR-RLE 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 290 GDYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 350 KHGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 408

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD------FMDFP 231
               L ++   G K I ++  + P     S E    A+   T+V  + +           
Sbjct: 409 NDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQTIEEQSEGRIKTGI 468

Query: 232 IPSENTDFD---DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +P E   +    +    ++I  +W      T+ V       +LPE               
Sbjct: 469 LPGEGAFYGPKFEYTLKDAIGREWQ---CGTTQVDF-----NLPER-------------- 506

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            FG  Y             K   V +     G+M     ++  ++ G   +W   ++P +
Sbjct: 507 -FGAFY-------IDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW---ISPLQ 555

Query: 349 ISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +  I +  D   R+  E    RL   G  V  D   E+I  +     +   P+ V+ G
Sbjct: 556 VVVATITSEADDYGREVAE----RLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCG 611

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +   +  V I+   +  +  MSL+E +
Sbjct: 612 RREAEERSVNIRRLGSQAQTAMSLDEAV 639


>gi|330791323|ref|XP_003283743.1| prolyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325086366|gb|EGC39757.1| prolyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 530

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 5/164 (3%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RGI+       G  +S   +  F+   G        S+G+   R +  +I    D K
Sbjct: 245 TNGRGIQAATSHCLGQNFSKMFNIEFENDKGGKSLAWQNSWGL-TTRTIGVMIMLHGDDK 303

Query: 337 GIIWPDSVAPFKISLI--NIKAHDQVCRDA-CEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           G++ P  +AP +  +I  + K  D    D   ++I   L   G  V  D+      G ++
Sbjct: 304 GLVLPPRIAPIQAVVIPLHFKDADTTAVDTKAKEIADSLKAAGIRVNLDNRPNYNPGHKY 363

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +L G P+++ +G K V+   V    R T  +  + +  ++N
Sbjct: 364 NHWELKGVPIRIEIGPKDVASGSVICCRRDTAEKSKVEISNIVN 407



 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M   + + I+S+R+LP    Q     R E +     +RSREFL ++ ++     
Sbjct: 134 PTSETIMYPAYANWIRSHRDLPLKLNQWVNVVRWEFKRPVPFLRSREFLWQEGHTAFANK 193

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +      +   Y R++  L
Sbjct: 194 EEADQEVYTILDLYRRVYEEL 214


>gi|307309192|ref|ZP_07588863.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|306900338|gb|EFN30954.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 660

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 93/448 (20%), Positives = 163/448 (36%), Gaps = 62/448 (13%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L E    AE   H+ + R   + H  +   G+  W   G +   ++ A +R  +  
Sbjct: 234 YLHVLAE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRR-RLE 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 289 GDYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD------FMDFP 231
               L ++   G K I ++  + P     S E    A+   T+V  + +           
Sbjct: 408 NDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQTIEEQSEGRIKTGI 467

Query: 232 IPSENTDFD---DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +P E   +    +    ++I  +W      T+ V       +LPE               
Sbjct: 468 LPGEGAFYGPKFEYTLKDAIGREWQ---CGTTQVDF-----NLPER-------------- 505

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            FG  Y             K   V +     G+M     ++  ++ G   +W   ++P +
Sbjct: 506 -FGAFY-------IDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW---ISPLQ 554

Query: 349 ISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +  I +  D   R+  E    RL   G  V  D   E+I  +     +   P+ V+ G
Sbjct: 555 VVVATITSEADDYGREVAE----RLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCG 610

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +   +  V I+   +  +  MSL+E +
Sbjct: 611 RREAEERSVNIRRLGSQAQTAMSLDEAV 638


>gi|207742945|ref|YP_002259337.1| threonyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206594340|emb|CAQ61267.1| probable threonyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 379

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G +    V   +R      G  E+  P +    LW  SG + +Y K
Sbjct: 255 LQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAGAGYSEVRTPQVMDRTLWEHSGHWQNY-K 313

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           E + + +   +     P +      IF   ++SYR+LP    +     R+E
Sbjct: 314 ENMFVTESEKREYAIKPMNCPGHVQIFNHGLRSYRDLPLRLAEFGANHRNE 364


>gi|27380648|ref|NP_772177.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27353813|dbj|BAC50802.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 9/138 (6%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGK 91
            +   G+  W P G      + A +R  +  TG   E++ P +    LW  SG +  Y +
Sbjct: 325 QEEGPGVVFWHPKGWTIFQQLIAYMR--RRLTGDYSEVNAPQILDKVLWETSGHWGWYRE 382

Query: 92  EMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            M       D+A         P +      IF+  +KSYR+LP    +  +  R E    
Sbjct: 383 NMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRLAEFGVVHRYEPSGA 442

Query: 147 F-GVMRSREFLMKDAYSF 163
             G+MR R F   DA+ F
Sbjct: 443 MHGLMRVRGFTQDDAHIF 460


>gi|156842346|ref|XP_001644541.1| hypothetical protein Kpol_1052p30 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115186|gb|EDO16683.1| hypothetical protein Kpol_1052p30 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 463

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + +   ++ +++++ G  E+  P +    LW +SG +++Y ++M 
Sbjct: 56  SPGSVFFLPNGAKIFNKLVQFMKLQQEHKFGFKEVITPIIYRKSLWEQSGHWENYKEDMF 115

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           ++  ++     YG  P +      IF+   +SY  LP          R+E      G+ R
Sbjct: 116 KVEGQDISKEEYGLKPMNCPGHCMIFKKFDRSYHELPLRLSDFSPLHRNEASGALSGLTR 175

Query: 152 SREFLMKDAYSF 163
            R+F   D + F
Sbjct: 176 VRKFHQDDGHIF 187


>gi|82753545|ref|XP_727721.1| threonyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483702|gb|EAA19286.1| threonyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 930

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W   G K  + +   +R+E       E+  P + S DLW  SG Y +Y K  + + +  +
Sbjct: 501 WFSHGAKIYNKLIEFMRKEYRIRKYDEVITPNIFSCDLWKTSGHYQNY-KNCMFIFNIEN 559

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           K     P +      IF+    SY++LP       +  R+E+     G+ R R F   DA
Sbjct: 560 KEWGMKPMNCPGHCLIFKQLNASYKSLPIRLADFGVLHRNEITGSLSGLTRVRRFQQDDA 619

Query: 161 YSF 163
           + F
Sbjct: 620 HIF 622


>gi|332637146|ref|ZP_08416009.1| seryl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 427

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 21/192 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++A  + +   G   +  + +Y+++      LD        E  + G  EM  P + 
Sbjct: 154 RGAKVAGARFVYYVGQGARLERAVYNFM------LD--------EHQKEGYKEMITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                  +G+Y  + ++  R+    D  +I  PT E  +T+ FR  +     LP++   +
Sbjct: 200 KDAAMFGTGQYPKFMEDAYRVGTNEDMTLI--PTAEVPLTNYFREEVIDADKLPYSVTAV 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S  +   M  +   I  +L L 
Sbjct: 258 SPSFRQEAGSAGRDTRGLIRMHQFNKVEMVKF-TKPEQSYQALEDMTANAENILQKLNLP 316

Query: 192 SIPMRAESGPIG 203
              +   +G +G
Sbjct: 317 YHVITLSTGDMG 328


>gi|139473237|ref|YP_001127952.1| seryl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|166223299|sp|A2RCY1|SYS_STRPG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|134271483|emb|CAM29704.1| seryl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 425

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F  + E S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFAKSEE-SYQEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +LGL
Sbjct: 299 EKMTANAENILQKLGL 314


>gi|327188321|gb|EGE55539.1| threonyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 668

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 21/190 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA--IEMSVPTLQSADLWVESGRYDSYG 90
            +   G+  W   G +    + A +R    R  A   E++ P +    LW  SG +  Y 
Sbjct: 259 QEEGPGVVFWHGKGWRIFQTLVAYMR---RRLAADYQEVNAPQVLDTSLWETSGHWGWYQ 315

Query: 91  KEMLRLA-----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           + M  +            + +++     P +      IF+  +KSYR LP    +  L  
Sbjct: 316 ENMFAVKSAHAMTHPEDKEADNRVFALKPMNCPGHVQIFKHGLKSYRELPIRLAEFGLVH 375

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E      G+MR R F   DA+ F  T E       K+    L ++   G K I ++  
Sbjct: 376 RYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDLILSVYEDFGFKEIVVKLS 434

Query: 199 SGP---IGGD 205
           + P   +G D
Sbjct: 435 TRPEKRVGSD 444


>gi|229825871|ref|ZP_04451940.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
 gi|229789891|gb|EEP26005.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
          Length = 604

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 31/180 (17%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK---------------GIYSWLPLGQKALDNVNAIIRE 59
           P   E+ +H  ++R  +   H K               G+  WLP G +    +    R+
Sbjct: 164 PTKDELKAHLNLIREALERDHKKLGPKLDLFMFNETAPGMPYWLPRGWRLYQELINFWRK 223

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD--- 116
              + G  E+S P + +  LW+ SG +  Y   M  +   +D        + E+ +D   
Sbjct: 224 IHVKHGYQEISAPIINNRKLWLISGHWAHYVNNMFIIPGFDDDLTQRTLQNIELDSDSTF 283

Query: 117 ------------IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
                        ++  + SY+ LP  + +I +  R E   +  G+ R +EF   D ++F
Sbjct: 284 AAKPMNCPNAMLTYKRTVHSYKELPIRYNEIDVIHRKEKSGQLNGLFRVQEFRQDDDHTF 343


>gi|148642463|ref|YP_001272976.1| glycyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|261349423|ref|ZP_05974840.1| glycine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|148551480|gb|ABQ86608.1| glycyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|288861785|gb|EFC94083.1| glycine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 564

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 2/100 (2%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           SVAP ++ +  +  + +  R+   +I  +L + G  V +D  G  IG ++A AD +G PL
Sbjct: 466 SVAPVQVGIYPL-VNKEGPREIAIEITDKLRESGFKVEYDVSG-TIGKRYARADEIGIPL 523

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + V    + D+KV +++R +  +E ++++E+ +Y    +
Sbjct: 524 AITVDFDSLEDNKVTVRNRDSEAQERIAIDEIKDYLEEYY 563


>gi|70996464|ref|XP_752987.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66850622|gb|EAL90949.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159131721|gb|EDP56834.1| threonyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 535

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 86  YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 145

Query: 95  RLADRNDKAMIYGPTHEEVMTD-----------IFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R       G T E+               +F+S   SYR LP  +       R+E+
Sbjct: 146 EVKGRGATGEADGETGEDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEI 205

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 206 SGALSGLTRVRRFHQDDGHIF 226


>gi|308160413|gb|EFO62904.1| Prolyl-tRNA synthetase [Giardia lamblia P15]
          Length = 542

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 12/183 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++   I   G ++S      +     ++ +  +   GI + RV+A  +    D  G
Sbjct: 256 CGRVLQTAGIHNLGQRFSSTFDILYANRANENVHPYLTCAGI-STRVLACALSIHGDSGG 314

Query: 338 IIWPDSVAPFKISLINI----KAHDQVCRDACEKIY----ARLSKVGCDV-FWDDMGEQI 388
           ++ P  +AP  + +I I    K + +  R   EK+        SK+G  V   DD    +
Sbjct: 315 LVLPPLIAPIHVVIIPIGCGKKNNQESDRQVLEKVNEIADTLKSKLGLRVSVDDDFSRSM 374

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSNNR 446
           G +    +L G PL++ +G + +++++  +  R  G  +   + + EVI  +SH   N+ 
Sbjct: 375 GDKLYYYELKGVPLRIEIGQRDLTNNQCIVVPRDVGKDQKRVIPITEVIKVSSHTTENHE 434

Query: 447 PVL 449
            V+
Sbjct: 435 LVV 437


>gi|261191482|ref|XP_002622149.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239589915|gb|EEQ72558.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 569

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   L+ + + +R +  + G  E+  P++    LW  SG + +Y  +M 
Sbjct: 98  YSPGSPLFLPNGTHILNKLTSFLRAQYIQYGFREVLTPSIYKKSLWEVSGHWQNYKDDMY 157

Query: 95  RLADRN-------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            +  R              D++    P +      +F+S   SYR LP  +       R+
Sbjct: 158 EVRGRGATGEQTAGTEIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHRN 217

Query: 142 ELRPRF-GVMRSREFLMKDAYSF 163
           E+     G+ R R F   D + F
Sbjct: 218 EISGSLSGLTRVRRFHQDDGHIF 240


>gi|225685037|gb|EEH23321.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 656

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++A ++E  +      + +G++ +P  VAP K+ L+ + +++   +    ++
Sbjct: 504 SFGIG--RILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPL-SNNPSFQPLVHRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 561 TLKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRERDTTKQVR 620

Query: 429 MSLEEV 434
            S EE+
Sbjct: 621 ASEEEI 626



 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + P+G K     H    + +S
Sbjct: 238 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPDGGKKHPRFHEVQDLELS 296

Query: 181 YL 182
           +L
Sbjct: 297 FL 298


>gi|86357812|ref|YP_469704.1| threonyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|123765783|sp|Q2K859|SYT_RHIEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|86281914|gb|ABC90977.1| threonyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 668

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 23/191 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESGRYDSY 89
            +   G+  W   G +    + A +R    R  AI   E++ P +    LW  SG +  Y
Sbjct: 259 QEEGPGVVFWHGKGWRIFQTLVAYMR----RRLAIDYEEVNAPQVLDTSLWETSGHWGWY 314

Query: 90  GKEMLRLA-----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            + M  +            + +++     P +      IF+  +KSYR LP    +  L 
Sbjct: 315 QENMFGVKSAHAMTHPDDKEADNRVFALKPMNCPGHVQIFKHGLKSYRELPIRLAEFGLV 374

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R E      G+MR R F   DA+ F  T E       K+    L ++   G K I ++ 
Sbjct: 375 HRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDLILSVYEDFGFKEIVVKL 433

Query: 198 ESGP---IGGD 205
            + P   +G D
Sbjct: 434 STRPEKRVGSD 444


>gi|307321522|ref|ZP_07600917.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306892829|gb|EFN23620.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
          Length = 660

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 93/448 (20%), Positives = 163/448 (36%), Gaps = 62/448 (13%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L E    AE   H+ + R   + H  +   G+  W   G +   ++ A +R  +  
Sbjct: 234 YLHVLAE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRR-RLE 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 289 GDYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD------FMDFP 231
               L ++   G K I ++  + P     S E    A+   T+V  + +           
Sbjct: 408 NDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQTIEEQSEGRIKTGI 467

Query: 232 IPSENTDFD---DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +P E   +    +    ++I  +W      T+ V       +LPE               
Sbjct: 468 LPGEGAFYGPKFEYTLKDAIGREWQ---CGTTQVDF-----NLPER-------------- 505

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            FG  Y             K   V +     G+M     ++  ++ G   +W   ++P +
Sbjct: 506 -FGAFY-------IDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW---ISPLQ 554

Query: 349 ISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           + +  I +  D   R+  E    RL   G  V  D   E+I  +     +   P+ V+ G
Sbjct: 555 VVVATITSEADDYGREVAE----RLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCG 610

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +   +  V I+   +  +  MSL+E +
Sbjct: 611 RREAEERSVNIRRLGSQAQTAMSLDEAV 638


>gi|115388031|ref|XP_001211521.1| hypothetical protein ATEG_02343 [Aspergillus terreus NIH2624]
 gi|114195605|gb|EAU37305.1| hypothetical protein ATEG_02343 [Aspergillus terreus NIH2624]
          Length = 592

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 177 EKKIAIRPTSETVMYPYYSKWIRSHRDLPLRLNQWNSVVRWEFKHPQPFLRTREFLWQEG 236

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++  LT + +      +   Y +I+  L
Sbjct: 237 HTAHLTQDAAHEEVMYILDLYAKIYEEL 264


>gi|226294349|gb|EEH49769.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 656

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++A ++E  +      + +G++ +P  VAP K+ L+ + +++   +    ++
Sbjct: 504 SFGIG--RILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPL-SNNPSFQPLVHRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 561 TLKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRERDTTKQVR 620

Query: 429 MSLEEV 434
            S EE+
Sbjct: 621 ASEEEI 626



 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + P+G K     H    + +S
Sbjct: 238 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPDGGKKHPRFHEVQDLELS 296

Query: 181 YL 182
           +L
Sbjct: 297 FL 298


>gi|10800405|gb|AAG23138.2|AF245446_1 prolyl-tRNA synthetase [Giardia intestinalis]
          Length = 542

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++   I   G ++S      +     +  +  +   GI + RV+A  +    D  G
Sbjct: 256 CGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLACALSIHGDSGG 314

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--------SKVGCDV-FWDDMGEQI 388
           ++ P  +AP  + +I I    +  +++ +++  ++        SK+G  V   DD  + +
Sbjct: 315 LVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSM 374

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSNNR 446
           G +    +L G PL++ VG + +++ +  +  R  G  +   + + EV+  +SH   N+ 
Sbjct: 375 GDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHE 434

Query: 447 PVL 449
            V+
Sbjct: 435 LVV 437



 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 27/148 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL----------------QSADLW 80
           KG   + P G    + +  +  EE  + G  ++  PT+                ++   W
Sbjct: 69  KGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFW 128

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           VE G      +   RLA R        PT E  +  +F   ++SY++LP   +Q    FR
Sbjct: 129 VEKGGLQPLEE---RLALR--------PTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFR 177

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPE 168
            E +    ++R RE    +A+    T E
Sbjct: 178 HETKNTKPLIRVREIHWNEAHCCHATAE 205


>gi|87311204|ref|ZP_01093327.1| prolyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87286112|gb|EAQ78023.1| prolyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 506

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           A + D+ +I  PT E ++  ++   ++SYR+LP    Q     R ELR R   +R+ EFL
Sbjct: 113 AGKLDEPLIVRPTSETIIGAMYAKWVQSYRDLPILINQWANVVRWELRTRM-FLRTTEFL 171

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSY 181
            ++ ++   T E +     +M   Y
Sbjct: 172 WQEGHTAHATAEEAIAETRQMLEVY 196



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  +S      F+  +G + +    S+G+ + R+V  +I +  D  G+I
Sbjct: 236 KALQAGTSHFLGQNFSKAQEIKFQTQEGTEEFAWTTSWGV-STRLVGGLIMTHSDDDGLI 294

Query: 340 WPDSVAPFKISLINIKAHDQ 359
            P  +AP  I L+ I   D+
Sbjct: 295 VPPRLAPKHIVLLPIYRSDE 314


>gi|239612679|gb|EEQ89666.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
 gi|327351753|gb|EGE80610.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 569

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   L+ + + +R +  + G  E+  P++    LW  SG + +Y  +M 
Sbjct: 98  YSPGSPLFLPNGTHILNKLTSFLRAQYIQYGFREVLTPSIYKKSLWEVSGHWQNYKDDMY 157

Query: 95  RLADRN-------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            +  R              D++    P +      +F+S   SYR LP  +       R+
Sbjct: 158 EVRGRGATGEQTAETEIGEDESYGLKPMNCPGHCLLFKSQNHSYRELPLRYADFSPLHRN 217

Query: 142 ELRPRF-GVMRSREFLMKDAYSF 163
           E+     G+ R R F   D + F
Sbjct: 218 EISGSLSGLTRVRRFHQDDGHIF 240


>gi|68068437|ref|XP_676128.1| glycine--tRNA ligase [Plasmodium berghei strain ANKA]
 gi|56495677|emb|CAH97986.1| glycine--tRNA ligase, putative [Plasmodium berghei]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +PF   QI L FR+E+ PR G++R REF M +   F   PE SKH 
Sbjct: 315 MPFAGAQIGLGFRNEISPRNGLLRVREFEMGEIEYF-FNPEKSKHE 359


>gi|190891876|ref|YP_001978418.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 652]
 gi|238692487|sp|B3PNV4|SYT_RHIE6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190697155|gb|ACE91240.1| threonyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 668

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 21/190 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA--IEMSVPTLQSADLWVESGRYDSYG 90
            +   G+  W   G +    + A +R    R  A   E++ P +    LW  SG +  Y 
Sbjct: 259 QEEGPGVVFWHGKGWRIFQTLVAYMR---RRLAADYQEVNAPQVLDTSLWETSGHWGWYQ 315

Query: 91  KEMLRLA-----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           + M  +            + +++     P +      IF+  +KSYR LP    +  L  
Sbjct: 316 ENMFAVKSAHAMTHPEDKEADNRVFALKPMNCPGHVQIFKHGLKSYRELPIRLAEFGLVH 375

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E      G+MR R F   DA+ F  T E       K+    L ++   G K I ++  
Sbjct: 376 RYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDLILSVYEDFGFKEIVVKLS 434

Query: 199 SGP---IGGD 205
           + P   +G D
Sbjct: 435 TRPEKRVGSD 444


>gi|159110155|ref|XP_001705339.1| Prolyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157433422|gb|EDO77665.1| Prolyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 542

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++   I   G ++S      +     +  +  +   GI + RV+A  +    D  G
Sbjct: 256 CGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLACALSIHGDSGG 314

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--------SKVGCDV-FWDDMGEQI 388
           ++ P  +AP  + +I I    +  +++ +++  ++        SK+G  V   DD  + +
Sbjct: 315 LVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSM 374

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSNNR 446
           G +    +L G PL++ VG + +++ +  +  R  G  +   + + EV+  +SH   N+ 
Sbjct: 375 GDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHE 434

Query: 447 PVL 449
            V+
Sbjct: 435 LVV 437



 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 27/148 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL----------------QSADLW 80
           KG   + P G    + +  +  EE  + G  ++  PT+                ++   W
Sbjct: 69  KGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFW 128

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           VE G      +   RLA R        PT E  +  +F   ++SY++LP   +Q    FR
Sbjct: 129 VEKGGLQPLEE---RLALR--------PTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFR 177

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPE 168
            E +    ++R RE    +A+    T E
Sbjct: 178 HETKNTKPLIRVREIHWNEAHCCHATAE 205


>gi|190348873|gb|EDK41420.2| hypothetical protein PGUG_05518 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIE-------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++ E          D   +  P +VAP K+ L+ + +H  +     +K+
Sbjct: 498 SFGIG--RIIYSIFEHVFWSRPEDKDRCVLSLPPAVAPTKVLLVPLSSHADLS-PIVKKV 554

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K       DD    IG ++A  D LG P  + +    V D+ + ++ R +  +  
Sbjct: 555 SAYLRKEQIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDASITLRERDSTKQVR 614

Query: 429 MSLEEVI 435
            SLE+V+
Sbjct: 615 GSLEDVV 621



 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF    I   FR+E+ PR G++R REFLM +   + + PE   H
Sbjct: 236 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEDKSH 279


>gi|325972878|ref|YP_004249942.1| prolyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|323651480|gb|ADX97562.1| prolyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 463

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 86/423 (20%), Positives = 162/423 (38%), Gaps = 78/423 (18%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L +G    H +G + W        + + + +  E ++ G   +  P L     + E  + 
Sbjct: 21  LVSGTFFLHPRGCFIW--------EQIQSFLNAEFSKLGVSNVLFPALLPFQKFQEEQKN 72

Query: 87  DSYG--KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRD 141
                 +E++RL +   +  +    PT E + +  F+  +K     LPF   Q    +R+
Sbjct: 73  SETLNLEEIMRLHNSKSEQSVVALRPTSEILFSHYFKERLKERDIKLPFLLNQWSSVYRE 132

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E   +    RS+EF  ++ +S     +       K+   Y ++   L             
Sbjct: 133 ERNTKL-FFRSKEFYWQELHSLHENQKDLDFHLEKIHEIYKKLLREL------------- 178

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               L  E+I    TGE  +        FP  ++ T  ++ I    + +  +     T D
Sbjct: 179 ----LCIEYI----TGEKTIL-----ERFP-GAQKTLTNECI----LPDGQSLQLTTTHD 220

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           + N   F  L + K   A  IE+           L +SA              GS    +
Sbjct: 221 LSN--FFSKLMDIKYWGANDIEMT---------PLQLSA--------------GS----S 251

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVF 380
            R++ A++E   D  G+I P +++   I+++ + +  D+        I  +L      + 
Sbjct: 252 TRLIGALVEMHKDSVGVILPWNLSKENIAILLLGENRDEETISYISSIREKLCNYRLHI- 310

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD     G +    + LG P+ +I+G + + + K+ IK RL+  + +  L  + N  S 
Sbjct: 311 -DDSYSSFGKKINKVERLGIPVSLIIGQQEIKNKKITIKSRLSESKYECDLSNLENEIS- 368

Query: 441 RFS 443
           RFS
Sbjct: 369 RFS 371


>gi|310823910|ref|YP_003956268.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309396982|gb|ADO74441.1| Threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W P G      +   +R E    G  E+  P +    +W  SG + ++  
Sbjct: 19  LQEEAPGMVFWHPRGFVLYQLLEERVRRELASGGYREVRTPQVLGQRIWESSGHWQNFRH 78

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M  L D  ++     P        +F+    S+R+LP    +  L  R+E      G+ 
Sbjct: 79  GMFVLDD-GERPFAMKPVSCPGHIQLFQRLAPSFRSLPLRMAEFGLVHRNESSGALHGLF 137

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           R R+F   D + F +  + +       F   LR F+R
Sbjct: 138 RLRQFTQDDGHIFCMEEQVADEV--AAFCRSLRAFYR 172


>gi|227501051|ref|ZP_03931100.1| threonine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227216824|gb|EEI82222.1| threonine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 667

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 154/408 (37%), Gaps = 45/408 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+   G   + P G   ++ +     +  N  G  E+  P + +  LW  SG +D Y KE
Sbjct: 284 HEEGPGFPFFHPNGMILMNELLVWWTDVLNNNGYGEIKTPLILNEALWHRSGHWDHY-KE 342

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
            +     + +A    P +       + ++  SYR+LP    +     R EL     G+ R
Sbjct: 343 NMYFTKIDGEAYAVKPMNCPGSVLTYAANQHSYRDLPIRLAEYGQVHRHELSGTLHGLFR 402

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEF 210
            R F   DA+ +   P   K    KM      ++   G K +I +        G++    
Sbjct: 403 VRTFTQDDAHVY-CMPSQIKEEVYKMIDLADLLYSTFGFKYTIELSTRPDDFMGEIKD-- 459

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               D  E Q+   K   +  I  E    D             A Y    D H   L D+
Sbjct: 460 ---WDFAEDQL--KKALEERGIEYEINPGD------------GAFYGPKIDFH---LLDA 499

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMS--ATFKGADG-KDHYVQMGSYGIGAMRVVAA 327
                  + R  + G I      + LP +   T+   +G K     +    +G++     
Sbjct: 500 -------AKREWQCGTI---QLDFQLPQNFDLTYIDENGEKKRPAMLHRALLGSIERFIG 549

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+     G+  +W   + P ++ +I +   D+    A E++  ++ K G  V  D   E 
Sbjct: 550 VLTEHFAGRFPLW---LNPQQVEIIPVS--DKYIPYA-EELKEKIKKAGYRVNIDYRSEG 603

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +G +   A L+     ++VG K  +  K+ +++R      D+SLEE I
Sbjct: 604 VGYKIRQAQLMRTNYMLVVGEKEENSGKLTVRNRDAKETPDVSLEEFI 651


>gi|51102324|gb|AAT95875.1| prolyl-tRNA synthetase [Trichomonas vaginalis]
          Length = 506

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 118/314 (37%), Gaps = 71/314 (22%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++  M   PT E  M  +F   +K+  +LP    Q    +R E +    ++R RE    +
Sbjct: 130 HEDEMCLRPTSETAMYSMFAKWVKTIEDLPVMVQQSCNVYRYETKGTKPLIRVREIPWNE 189

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A++   TP+ +     K +                          D+ H+ +    + + 
Sbjct: 190 AHTAHATPQEALDILGKFW--------------------------DIVHDILTTKLSIDG 223

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                 D+  FP  +E TD  D++                           +P  + + +
Sbjct: 224 LRLRRPDWDRFP-GAEFTDVLDVV---------------------------MPCGRVLQS 255

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK-GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            G       Y G  +S      FK   DG+  Y  M   G+ + R +AAV+ +  D KG+
Sbjct: 256 VGAH-----YLGQHFS----KVFKIQVDGEFSY--MTCIGV-STRCLAAVLSAHGDDKGL 303

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVA 395
           I P  +AP ++ ++ I  K +D +     E +   L   G  V   DD     G +F   
Sbjct: 304 IIPTIIAPIQVVIVPILRKDNDALLAKVAE-MKKELRAAGIRVHIDDDTTRSPGEKFYYW 362

Query: 396 DLLGFPLQVIVGSK 409
           ++ G PL++ VG +
Sbjct: 363 EMKGVPLRIEVGPR 376


>gi|309792694|ref|ZP_07687145.1| prolyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308225243|gb|EFO79020.1| prolyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 480

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 95/440 (21%), Positives = 167/440 (37%), Gaps = 89/440 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           ++++L I+    R+A++A    ++R G I     G   W  + Q+ALD+    I+E    
Sbjct: 14  NQWYLDIV----READLAEVAEVVR-GCIVFKPTGWAIW-EMMQRALDDR---IKE---- 60

Query: 64  TGAIEMSVPTL-QSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG   +  P L   + +  E+   D +  E+  +     + +    +  PT E ++   +
Sbjct: 61  TGHSNVQFPLLIPKSFIMKEAEHVDGFAPEVAEVTRAGGEDLTEPYVIRPTSETIIGHFY 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              I+SYR+LP  + Q     R E       MR+R FL    + +    EG     N+  
Sbjct: 121 SKWIRSYRDLPLLYNQWCNVMRWE-------MRTRPFLRTSEFIWQ---EGHTAHVNE-- 168

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI----PS 234
                             AE+      + HE  V AD  E         M  P+     +
Sbjct: 169 ------------------AEAEAETLKILHE--VYADFAE-------QVMAVPVIRGLKT 201

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           EN  F               P A  S      + D          R ++ G     G  +
Sbjct: 202 ENEKF---------------PGALRSYCIEAMMQD---------GRALQAGTSHNLGQNF 237

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +     T+   +    +    S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I
Sbjct: 238 AKAFEITYTDHNNTVQHAWTTSWGV-STRLIGALIMTHSDDEGLVIPPRLAPIQVVVVPI 296

Query: 355 KAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFV 411
             +D         ++A  S   G   F  D  + +  G +F   ++ G P+++ VG K V
Sbjct: 297 FKNDAEREKVMATVHALTSTWKGVLRFKIDDRDNLSPGFKFNEWEMKGVPVRIEVGPKDV 356

Query: 412 SDSKVEIKHRLTGIREDMSL 431
               V I  R    RE  S 
Sbjct: 357 EKGSVAIARRDIPGREGKSF 376


>gi|146413054|ref|XP_001482498.1| hypothetical protein PGUG_05518 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIE-------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++ E          D   +  P +VAP K+ L+ + +H  +     +K+
Sbjct: 498 SFGIG--RIIYSIFEHVFWSRPEDKDRCVLSLPPAVAPTKVLLVPLSSHADLS-PIVKKV 554

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K       DD    IG ++A  D LG P  + +    V D+ + ++ R +  +  
Sbjct: 555 SAYLRKEQIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDASITLRERDSTKQVR 614

Query: 429 MSLEEVI 435
            SLE+V+
Sbjct: 615 GSLEDVV 621



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF    I   FR+E+ PR G++R REFLM +   + + PE   H
Sbjct: 236 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEDKSH 279


>gi|123434302|ref|XP_001308783.1| Anticodon binding domain containing protein [Trichomonas vaginalis
           G3]
 gi|121890480|gb|EAX95853.1| Anticodon binding domain containing protein [Trichomonas vaginalis
           G3]
          Length = 513

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 118/314 (37%), Gaps = 71/314 (22%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++  M   PT E  M  +F   +K+  +LP    Q    +R E +    ++R RE    +
Sbjct: 137 HEDEMCLRPTSETAMYSMFAKWVKTIEDLPVMVQQSCNVYRYETKGTKPLIRVREIPWNE 196

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A++   TP+ +     K +                          D+ H+ +    + + 
Sbjct: 197 AHTAHATPQEALDILGKFW--------------------------DIVHDILTTKLSIDG 230

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                 D+  FP  +E TD  D++                           +P  + + +
Sbjct: 231 LRLRRPDWDRFP-GAEFTDVLDVV---------------------------MPCGRVLQS 262

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK-GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            G       Y G  +S      FK   DG+  Y  M   G+ + R +AAV+ +  D KG+
Sbjct: 263 VGAH-----YLGQHFS----KVFKIQVDGEFSY--MTCIGV-STRCLAAVLSAHGDDKGL 310

Query: 339 IWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVA 395
           I P  +AP ++ ++ I  K +D +     E +   L   G  V   DD     G +F   
Sbjct: 311 IIPTIIAPIQVVIVPILRKDNDALLAKVAE-MKKELRAAGIRVHIDDDTTRSPGEKFYYW 369

Query: 396 DLLGFPLQVIVGSK 409
           ++ G PL++ VG +
Sbjct: 370 EMKGVPLRIEVGPR 383


>gi|326331281|ref|ZP_08197573.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325950914|gb|EGD42962.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 411

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 18/166 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--- 94
           G+  WLP G      +  +  +     G + +  P L    L+  SG +  +  +M    
Sbjct: 24  GLPLWLPDGAVVFAELEQLAADLARADGCVPVKTPVLGKRALFERSGHWAKFADDMFPPM 83

Query: 95  -----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
                   + +D  ++  P +      ++R+   SYR LP   +++   FR E   R GV
Sbjct: 84  AVGSGSAGEEDD--LVLRPANCPHHALVYRARPHSYRELPVRLHELAPMFRAE---RSGV 138

Query: 150 M----RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           +    R R+  + D + F   P+       K   S LR    LGL+
Sbjct: 139 LSGLSRVRQINLDDTHVF-CRPDQVAEEAAKALSSALRAQDILGLR 183


>gi|255918003|pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl-Adenylate
 gi|255918004|pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl-Adenylate
          Length = 518

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++   I   G ++S      +     +  +  +   GI + RV+A  +    D  G
Sbjct: 232 CGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLACALSIHGDSGG 290

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--------SKVGCDV-FWDDMGEQI 388
           ++ P  +AP  + +I I    +  +++ +++  ++        SK+G  V   DD  + +
Sbjct: 291 LVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSM 350

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSNNR 446
           G +    +L G PL++ VG + +++ +  +  R  G  +   + + EV+  +SH   N+ 
Sbjct: 351 GDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHE 410

Query: 447 PVL 449
            V+
Sbjct: 411 LVV 413



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 27/148 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL----------------QSADLW 80
           KG   + P G    + +  +  EE  + G  ++  PT+                ++   W
Sbjct: 45  KGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFW 104

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           VE G      +   RLA R        PT E  +  +F   ++SY++LP   +Q    FR
Sbjct: 105 VEKGGLQPLEE---RLALR--------PTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFR 153

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPE 168
            E +    ++R RE    +A+    T E
Sbjct: 154 HETKNTKPLIRVREIHWNEAHCCHATAE 181


>gi|295667617|ref|XP_002794358.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226286464|gb|EEH42030.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 200 PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTE 259

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
             ++    ++   Y  ++  L
Sbjct: 260 AAAREEVLQILEHYAHVYEEL 280


>gi|328543265|ref|YP_004303374.1| Threonyl-tRNA synthetase [polymorphum gilvum SL003B-26A1]
 gi|326413011|gb|ADZ70074.1| Threonyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 654

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  +   G+  W   G     ++ A +R   
Sbjct: 230 KAYLHMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHAKGWSLFQSLVAYMR--- 282

Query: 62  NRTGAI--EMSVPTLQSADLWVESGRYDSYGKEM--LRLAD---RNDKAMIYGPTHEEVM 114
            R  A   E++ P +    LW  SG +  Y + M  ++ AD    + +     P +    
Sbjct: 283 RRLAADYDEVNAPQILDTSLWETSGHWGWYKENMFAVQCADTEAEDTRLFALKPMNCPGH 342

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E     
Sbjct: 343 VQIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEEQLAAE 401

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
             K+    L ++   G + I ++  + P   +G D
Sbjct: 402 CLKINDLILSVYQDFGFEEIVVKLSTRPEKRVGSD 436


>gi|226291914|gb|EEH47342.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 199 PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTE 258

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
             ++    ++   Y  ++  L
Sbjct: 259 AAAREEVLQILEHYAHVYEEL 279


>gi|82914985|ref|XP_728923.1| glycyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485606|gb|EAA20488.1| glycyl-tRNA synthetase [Plasmodium yoelii yoelii]
          Length = 796

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF   QI L FR+E+ PR G++R REF M +   F   PE SKH
Sbjct: 371 MPFAGAQIGLGFRNEISPRNGLLRVREFEMGEIEYF-FNPEKSKH 414


>gi|332522516|ref|ZP_08398768.1| serine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332313780|gb|EGJ26765.1| serine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHAKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYDEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +L L
Sbjct: 299 EKMTANAENILQKLNL 314


>gi|238924616|ref|YP_002938132.1| threonyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|238876291|gb|ACR75998.1| threonyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 7/162 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P G K +  +   I + E    G +    P +  +DL+  SG +D Y   M  
Sbjct: 278 QGLPLMMPKGTKMIMKLQRWIEDLEDKEWGYVRTKTPLMAKSDLYKISGHWDHYLDGMFV 337

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           L     D  ++ M   P        ++++   SYR+LP+   +    FR+E      G+ 
Sbjct: 338 LGDPEKDGEEEVMALRPMTCPFQYYVYKAKQHSYRDLPYRMGETSTLFRNEDSGEMHGLT 397

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           R R+F + + ++  + P+  +      F     +   LGL++
Sbjct: 398 RVRQFTISEGHNV-IRPDQCEEELKACFNLNRYVLKVLGLEN 438


>gi|145592022|ref|YP_001154024.1| glycyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283790|gb|ABP51372.1| glycyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 585

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 320 GAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSK 374
           G  R++ AV+E +   +G    +  P  VAP  + ++ I K  D V  +    +   L+ 
Sbjct: 444 GLDRIMYAVLEYAVAEEGGRVYLRLPADVAPINVCILPIVKRQDYV--EIGRSLRKELAT 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G   ++DD G  IGS++A  D +G PL V +  +  +D  V I+ R T  +  + L +V
Sbjct: 502 EGFLAWYDDEG-TIGSRYAACDEIGVPLAVTIDERTPTDGTVTIRDRDTRKQVRIGLRDV 560

Query: 435 INYAS 439
             + +
Sbjct: 561 AKFLA 565


>gi|295398161|ref|ZP_06808210.1| serine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294973680|gb|EFG49458.1| serine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 126/338 (37%), Gaps = 81/338 (23%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y+++      LD        +    G  E+  P L 
Sbjct: 154 RGAKVSGARFLYYRGLGARLERAVYNFM------LD--------QHQEEGYEEIIPPYLV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + +    +G++  + +++    +  D+ +   PT E  +T+ F + I    NLP  F  +
Sbjct: 200 NENAMYGTGQFPKFTEDVFSTTNE-DRHLTLIPTAEVPLTNYFANEIIPGENLPIYFTAM 258

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 259 SPSFRSEAGSAGRDTRGLIRLHQFQKVEMVKF-ARPEDSYDELEKMVANAENILQKLNLP 317

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   +G +G          A T + +V+         +P++ T              
Sbjct: 318 YRVMTLSTGDMG-------FSAAKTYDLEVW---------VPAQET-------------- 347

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
               Y   S   N + F +    +R   R                     F+ A+GK  Y
Sbjct: 348 ----YREISSCSNTEAFQA----RRALIR---------------------FRNANGKPEY 378

Query: 312 VQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           V  +   G+   R V A++E+  +  G +  P+++ P+
Sbjct: 379 VHTLNGSGLAVGRTVTAILENYQNADGSVTIPEALVPY 416


>gi|225680119|gb|EEH18403.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 496

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 89  PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTE 148

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
             ++    ++   Y  ++  L
Sbjct: 149 AAAREEVLQILEHYAHVYEEL 169


>gi|193211793|ref|YP_001997746.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085270|gb|ACF10546.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 6/132 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM---L 94
           G+  WLP G    + +   ++ EQ + G + +  P + + +L+  SG Y  Y       L
Sbjct: 277 GLPIWLPNGAIIRNELETFLKAEQRKRGYVPVYTPHIGNIELYKRSGHYPYYSDSQFPPL 336

Query: 95  RLADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
              D   +   Y   P +      I+   ++SYR+LP    +    +R E      G++R
Sbjct: 337 TYKDETGREEQYLLKPMNCPHHHLIYSQTLRSYRDLPIRLTEFGTVYRHEQSGELNGLVR 396

Query: 152 SREFLMKDAYSF 163
           +R F   D++ +
Sbjct: 397 ARGFTQDDSHIY 408



 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 14/159 (8%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGK 336
           +G  +  GT    Y +P     ++ G+DG+ H  V +     G+M R +  +IE +  G 
Sbjct: 499 IGRKWQLGTVQVDYVMPERFDLSYIGSDGQKHRPVVIHRAPFGSMERFIGVLIEHTA-GN 557

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             +W   +AP +++++ I A D    D   ++YA+L   G     D   E+IG +   A+
Sbjct: 558 FPLW---LAPVQVAVLPI-AED--VHDYAREVYAKLHAAGIRAELDLRSEKIGKKIREAE 611

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   P  +I+G       +V ++    G      ++E+I
Sbjct: 612 VSKIPAMLIIGRNEQEKGEVSLRRHRKGDEGSFGVDELI 650


>gi|302342263|ref|YP_003806792.1| threonyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301638876|gb|ADK84198.1| threonyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 627

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           GM+  H++G+     + +  L++     R E  R G   +  P L   +LW  SG YD+Y
Sbjct: 249 GMVVWHNRGM-----MLRMVLEDFE---RREHLRRGYQIVQGPQLLKRELWERSGHYDNY 300

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
            +E +   + +  A    P +      I++S + SYR+LP   +++    R E      G
Sbjct: 301 -RENMYFTEVDGTAYGVKPMNCLAHMLIYKSKMHSYRDLPIRMFELGTVHRHEKSGVLGG 359

Query: 149 VMRSREFLMKDAY 161
           + R R F   DA+
Sbjct: 360 LTRVRAFTQDDAH 372


>gi|4455680|emb|CAB36573.1| putative prolyl tRNA synthetase [Mycobacterium leprae]
          Length = 473

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/133 (19%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++     Y G  ++   +  +  A+ +  +V   S+G+ + R++ A++    D KG++
Sbjct: 216 KALQSATTHYLGDNFARAFNIRYTTAEEQQAFVHTTSFGL-STRMIGAIVMVHGDDKGLV 274

Query: 340 WPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
            P  VAP+++ ++ I   ++      A   +  RL   G     D   +   G ++   +
Sbjct: 275 LPPQVAPYQVVIVPITTGNKASEVGHAAADLARRLQAAGVRTHVDARPQLTPGWKYNEWE 334

Query: 397 LLGFPLQVIVGSK 409
           L G P+++ +G +
Sbjct: 335 LRGVPIRLELGPR 347



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           ++  PT E V+ D+    I S+R+LP    Q     R ELRPR  ++R+ EFL ++ +S
Sbjct: 100 LVIRPTSETVIGDMMAKWITSHRDLPLRLNQWSNVVRWELRPRM-LLRTIEFLWQEGHS 157


>gi|302855151|ref|XP_002959075.1| hypothetical protein VOLCADRAFT_70347 [Volvox carteri f.
           nagariensis]
 gi|300255572|gb|EFJ39869.1| hypothetical protein VOLCADRAFT_70347 [Volvox carteri f.
           nagariensis]
          Length = 563

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    +E     G   +  P +  ADLW  SG  + Y + M    
Sbjct: 209 GLVYWHPKGALVRHLIETFWKELHLSRGYQLVYSPHIAKADLWRTSGHLEFYKENMYEQM 268

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              D++    P +      +++    SYR+LP    ++   +R E      G+ R R F 
Sbjct: 269 KVEDESYQLRPMNCPFHISVYKDGYYSYRDLPLRLAELGTVYRYERSGTMHGLFRVRGFT 328

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 329 QDDAHIFCL 337


>gi|299472673|emb|CBN78325.1| Proline--tRNA ligase [Ectocarpus siliculosus]
          Length = 906

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M   F   I+S+R+LP    Q     R E +     +R+REFL ++ +    T 
Sbjct: 515 PTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRWEFKNPTPFLRTREFLWQEGH----TA 570

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
             S    +KM +  L ++ R+
Sbjct: 571 HASFEDADKMVIQALELYRRV 591


>gi|225028058|ref|ZP_03717250.1| hypothetical protein EUBHAL_02327 [Eubacterium hallii DSM 3353]
 gi|224954658|gb|EEG35867.1| hypothetical protein EUBHAL_02327 [Eubacterium hallii DSM 3353]
          Length = 536

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG  ++      +   D K   V   S+G+ + R++ A+I    D  G+
Sbjct: 283 CKALQSGTSHNFGNGFAKAFGIEYTNKDNKLSPVYETSWGM-STRIIGAIIMVHGDDSGL 341

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP +  +I I+       D   +I   L K    V  DD  +  G +F+  ++ 
Sbjct: 342 VLPPRIAPVQTMIIPIQQKKDGVLDKAFEIRDTL-KSNFSVKVDDSDKSPGWKFSEQEIQ 400

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLT 423
           G P ++ +G K +   +  I  R T
Sbjct: 401 GIPTRIEIGPKDIEKGQAVIVRRDT 425



 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 16/104 (15%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--L 137
           WV  G     G+E  +LA+R    +   PT E +  D  +  + SYR+LP  + Q    L
Sbjct: 155 WVTHG-----GEE--KLAER----LCVRPTSETLFCDHVKDIVHSYRDLPVVYNQWCSVL 203

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++    RP    +RS EFL ++ ++F  T E +K    +M   Y
Sbjct: 204 RWEKTTRP---FLRSSEFLWQEGHTFHATAEEAKERTEQMLNVY 244


>gi|308160139|gb|EFO62643.1| Threonyl-tRNA synthetase [Giardia lamblia P15]
          Length = 695

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M H+++ G   ++  G +    + A IRE  +     E+  PT  + DLW  SG    Y 
Sbjct: 292 MTHKYAPGAPMFMNNGTRIYRKLEAFIRELLHEFDYEEVMTPTFLNTDLWGISGHLQHYK 351

Query: 91  KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           + M  L  +      YG  P +      ++++   S + LP    +  +  R+EL     
Sbjct: 352 ENMFLLERKEKTDPQYGLKPMNCPCHCLLYKNQHHSVQELPIRMAEFGVVHRNELSGALS 411

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R   F   DA+ F
Sbjct: 412 GLTRVVRFEQDDAHIF 427


>gi|283782412|ref|YP_003373167.1| prolyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283440865|gb|ADB19307.1| prolyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 503

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 9/171 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F+   GK+ +    S+G+ + R++ A+I +  D  G+I
Sbjct: 233 KALQAGTSHFLGQNFAKAQEIKFQDQHGKECFAWTTSWGV-STRLIGALIMTHSDDDGLI 291

Query: 340 WPDSVAPFKISLINIKAHDQ--------VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            P  +AP  I L+ I  +D+        V     E    + S     V  DD   + G +
Sbjct: 292 IPPKLAPKHIVLLPIYRNDEERTAVLAYVKSLKVELESQKYSGESIRVMIDDRDLRGGEK 351

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                  G PL+  +G K ++ + V +  R TG +  +  E+++   + R 
Sbjct: 352 NWQHVKKGVPLRAEIGPKDIAKNGVFLARRDTGEKVGVGREDLVATIADRL 402



 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++  ++   ++SYR+LP    Q     R ELR R   +R+ EFL ++ 
Sbjct: 114 EEPLIVRPTSETIIGSMYAKWVQSYRDLPILINQWANVVRWELRTRL-FLRTTEFLWQEG 172

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T E ++   +KM   Y
Sbjct: 173 HTAHATEEEAREETSKMLEVY 193


>gi|119498573|ref|XP_001266044.1| glycyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119414208|gb|EAW24147.1| glycyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 656

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++IE         + +G++ +P  +AP K+ ++ +  H    R    ++
Sbjct: 504 SFGIG--RILYSMIEHVYWAREEDEARGVLSFPPVIAPTKVLIVPLSTHASF-RPLLLQL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +  
Sbjct: 561 MTKLRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDTTKQVR 620

Query: 429 MSLEEVIN 436
            S +E++ 
Sbjct: 621 ASEDEILQ 628



 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +++PF    I   FR+E+ PR G++R REFLM +   + + PEG K  +
Sbjct: 238 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEGGKKHH 285


>gi|159109673|ref|XP_001705100.1| Threonyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157433179|gb|EDO77426.1| Threonyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 695

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M H+++ G   ++  G +    + A IRE  +     E+  PT  + DLW  SG    Y 
Sbjct: 292 MTHKYAPGAPMFMNNGTRIYRKLEAFIRELLHEFDYEEVMTPTFLNTDLWGISGHLQHYK 351

Query: 91  KEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           + M  L  +      YG  P +      ++++   S + LP    +  +  R+EL     
Sbjct: 352 ENMFLLERKEKTDPQYGLKPMNCPCHCLLYKNQHHSVQELPIRMAEFGVVHRNELSGALS 411

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R   F   DA+ F
Sbjct: 412 GLTRVVRFEQDDAHIF 427


>gi|331703296|ref|YP_004399983.1| Threonine tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801851|emb|CBW54004.1| Threonine tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 80/423 (18%), Positives = 177/423 (41%), Gaps = 54/423 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G    + +   +R+++     I +  P + + +L+  SG +D YG++M +  
Sbjct: 257 GLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIGTVELYKTSGHWDHYGEDMFQPF 316

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                +D+  I  P +      +++   +SYR+LP    +  ++ R E      G+ R R
Sbjct: 317 NGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRICEHAIQHRFESSGSLTGLERVR 376

Query: 154 EFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHE 209
              + D++ F   D   +  + +Y K+    L+ F+ ++   S+ +R  +  +     ++
Sbjct: 377 GMKLTDSHIFVRSDQIEDEFRSTY-KLISEVLKTFNIQIDYLSLSLRDPNDKVK---FYK 432

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             ++ D  E+ +   K  +D  +  E    D             A Y    D+  +    
Sbjct: 433 DDLMWDKAESSL--EKVLIDLGLKYEKRIGD------------AAFYGPKLDIQIKT--- 475

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK------DHYVQMGSYGIGAMR 323
              +N  ++   I++   F    K+ L    T+   D K       H   +G+Y     R
Sbjct: 476 --AQNHEITVSTIQLD--FLMPNKFDL----TYIDKDQKLVRPIMIHRGLIGTYE----R 523

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +A ++E +   KG++ P  +AP ++ +I I   +    +    I+ +L K       D 
Sbjct: 524 FIATLLEQT---KGVL-PLWLAPKQVEIIPISESN---LEYANLIHQKLKKEFIRSHIDL 576

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E++  +   A     P Q+++G+K V ++ +  +   +  +  + ++E I+    + +
Sbjct: 577 RDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVPIQEFIDMLKQQIN 636

Query: 444 NNR 446
           + +
Sbjct: 637 DKK 639


>gi|302754528|ref|XP_002960688.1| hypothetical protein SELMODRAFT_74713 [Selaginella moellendorffii]
 gi|300171627|gb|EFJ38227.1| hypothetical protein SELMODRAFT_74713 [Selaginella moellendorffii]
          Length = 495

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM  IF   I+ +R+LPF   Q     R E +     +RSREFL ++ ++   T 
Sbjct: 135 PTSETVMYPIFAKRIRGHRDLPFKINQWCNVVRWEFKHPTPFIRSREFLWQEGHTAYATK 194

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           + +      +   Y R++  L
Sbjct: 195 KEADEEVYAVLDLYRRVYEEL 215



 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           ++ RGI+       G  ++      F+    +   V   S+G+   R +  +I    D K
Sbjct: 246 LTGRGIQGATSHCLGQNFAEMFDIVFEDEKRERKKVWQNSWGL-TTRTIGVMIMVHGDDK 304

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
                    P+K          Q   DA      +L   G  V  D       G +++  
Sbjct: 305 --------VPYK------DVDTQKLFDAAASTARQLKAAGLRVKEDTRDNYSPGWKYSNW 350

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +L G PL+V +G + +++S+V +  R TG +ED+ ++++++  S
Sbjct: 351 ELKGVPLRVEIGPRDLANSQVRVVRRDTGAKEDVPMDKIVDRIS 394


>gi|291525280|emb|CBK90867.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           rectale DSM 17629]
 gi|291529262|emb|CBK94848.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           rectale M104/1]
          Length = 657

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 7/162 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P G K +  +   I + E    G +    P +  +DL+  SG +D Y   M  
Sbjct: 259 QGLPLMMPKGTKMIMKLQRWIEDLEDKEWGYVRTKTPLMAKSDLYKISGHWDHYLDGMFV 318

Query: 96  LADR----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           L D      ++ M   P        ++++   SYR+LP+   +    FR+E      G+ 
Sbjct: 319 LGDPEKDGEEEVMALRPMTCPFQYYVYKAKQHSYRDLPYRMGETSTLFRNEDSGEMHGLT 378

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           R R+F + + ++  + P+  +      F     +   LGL++
Sbjct: 379 RVRQFTISEGHNV-IRPDQCEEELKACFNLNRYVLKVLGLEN 419


>gi|254362299|ref|ZP_04978411.1| threonine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|153093879|gb|EDN74807.1| threonine--tRNA ligase [Mannheimia haemolytica PHL213]
          Length = 643

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      +   +R +       E+  P +    LW ++G + +Y  
Sbjct: 256 MQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYAD 315

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      N +  I  P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 316 LMFTTQSENREYAI-KPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLM 374

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           R R F   DA+ F  T E  +            I+   G  +I ++  + P   IG D
Sbjct: 375 RVRGFTQDDAHIF-CTEEQIESEVISCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDD 431


>gi|312220920|emb|CBY00861.1| similar to glycyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R+  A+ E           +G++ +P +VAP K+ ++ + +H        + +
Sbjct: 506 SFGIG--RIFYALCEHVYWTREQDKARGVLSFPPAVAPTKVLIVPLSSHPDFS-PFVQTL 562

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ++L  +G     D  G  IG +++  D LG PL + V  + V D+   ++ R +  +  
Sbjct: 563 RSKLRSIGISSRIDASGASIGKRYSRNDELGTPLGITVDFQSVKDNTFTLRDRDSTEQVR 622

Query: 429 MSLEEVINYASH 440
            S++E+I   S+
Sbjct: 623 ASIDEIIAAISN 634



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           + +PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 240 QQMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 284


>gi|237734398|ref|ZP_04564879.1| glycyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|229382628|gb|EEO32719.1| glycyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 457

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFP 401
           SVAPFK++++ +        D   +IY++L+K   C+    D+  QIG ++   D +G P
Sbjct: 361 SVAPFKVAILPLTKKQS---DKATEIYSQLAKYFNCEY---DVAGQIGKRYRRQDAIGTP 414

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V V    + D  V ++ R T  +  + + ++++Y S + +
Sbjct: 415 YCVTVDFDTMEDETVTVRDRDTMEQIRLPINQLVDYISKKIT 456


>gi|15827816|ref|NP_302079.1| prolyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221230293|ref|YP_002503709.1| prolyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|13633969|sp|Q9Z5I7|SYP_MYCLE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511607|sp|B8ZRT2|SYP_MYCLB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13093368|emb|CAC30504.1| prolyl tRNA synthetase [Mycobacterium leprae]
 gi|219933400|emb|CAR71648.1| prolyl tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 480

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/133 (19%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++     Y G  ++   +  +  A+ +  +V   S+G+ + R++ A++    D KG++
Sbjct: 223 KALQSATTHYLGDNFARAFNIRYTTAEEQQAFVHTTSFGL-STRMIGAIVMVHGDDKGLV 281

Query: 340 WPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
            P  VAP+++ ++ I   ++      A   +  RL   G     D   +   G ++   +
Sbjct: 282 LPPQVAPYQVVIVPITTGNKASEVGHAAADLARRLQAAGVRTHVDARPQLTPGWKYNEWE 341

Query: 397 LLGFPLQVIVGSK 409
           L G P+++ +G +
Sbjct: 342 LRGVPIRLELGPR 354



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           ++  PT E V+ D+    I S+R+LP    Q     R ELRPR  ++R+ EFL ++ +S
Sbjct: 107 LVIRPTSETVIGDMMAKWITSHRDLPLRLNQWSNVVRWELRPRM-LLRTIEFLWQEGHS 164


>gi|331082613|ref|ZP_08331736.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400232|gb|EGG79874.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 658

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P G   L  +   I + E N  G +    P +   DL+  SG +D Y + M  
Sbjct: 259 QGLPLLMPKGVIMLKELQRWIEDLEDNEWGYVRTKTPLMAKNDLYKISGHWDHYKEGMFV 318

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      ++   P        +++++  SYR LP  + +    FR+E      G+ R 
Sbjct: 319 LGDEEKDKEVFALRPMTCPFQYYVYKANQHSYRELPIRYGETSTLFRNEDSGEMHGLTRV 378

Query: 153 REFLMKDAY 161
           R+F + + +
Sbjct: 379 RQFTISEGH 387


>gi|168704849|ref|ZP_02737126.1| prolyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 512

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +I  PT E ++ + ++  ++SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 114 EEPLIVRPTSETIIWNTYKKWVQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEG 172

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           ++   T + ++    +M    +R++ +   + + M    GP
Sbjct: 173 HTAHATAKEAEEETLQM----VRVYQKFAEEWMAMPVLVGP 209



 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 67/164 (40%), Gaps = 30/164 (18%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      FK    K+ Y    S+G+ + R++  +I +  D  G+
Sbjct: 232 GKALQAGTSHFLGQNFAKAFDVKFKDQSNKEEYAWATSWGV-STRLIGGLIMTHSDDNGL 290

Query: 339 IWPDSVAPFKISLINIKAHD------------------QVCRD---ACEKIYARLSKVGC 377
           + P  +AP  + ++ +  +D                   + RD     E I  ++     
Sbjct: 291 VVPPRLAPTHVVIVPLGKNDAERGPSIAAAEKLAAELRALPRDDFFGYEPISVKI----- 345

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D  +D   +Q G ++A  ++ G P++V +G K +      +  R
Sbjct: 346 DTMFD---KQPGFRYAEHEVRGVPVRVEIGPKDIEKGACAVARR 386


>gi|146304959|ref|YP_001192275.1| glycyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|145703209|gb|ABP96351.1| glycyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 571

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP+++++  +   D++ + A E IY  LS    +V +DD G  IG ++A  D +G 
Sbjct: 459 PKDLAPYQVAVFPLLERDELIKKARE-IYNLLSG-KYEVLFDDAG-SIGKRYARVDEIGV 515

Query: 401 PLQVIVGSKFVSDSKVEIKHR 421
           P  V V  + +SD  V I+ R
Sbjct: 516 PYAVTVDPQTLSDDSVTIRDR 536


>gi|258571682|ref|XP_002544644.1| glycyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237904914|gb|EEP79315.1| glycyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K     H      +S
Sbjct: 223 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHPRFHEVENTELS 281

Query: 181 YLRIFHRLGLKSIPMRAESG 200
           +L    +L   + P+R   G
Sbjct: 282 FLSREVQLSGSTKPIRMTIG 301



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E ++      + +G++ +P  VAP K+ L+ + +H    +    ++
Sbjct: 489 SFGIG--RILYCLMEQTYWSREGDEARGVLSFPPIVAPTKVLLVPLSSHSSF-QPLVRQL 545

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R
Sbjct: 546 TLKLRRMGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDR 598


>gi|260589197|ref|ZP_05855110.1| threonine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|260540278|gb|EEX20847.1| threonine--tRNA ligase [Blautia hansenii DSM 20583]
          Length = 658

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+   +P G   L  +   I + E N  G +    P +   DL+  SG +D Y + M  
Sbjct: 259 QGLPLLMPKGVIMLKELQRWIEDLEDNEWGYVRTKTPLMAKNDLYKISGHWDHYKEGMFV 318

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           L D      ++   P        +++++  SYR LP  + +    FR+E      G+ R 
Sbjct: 319 LGDEEKDKEVFALRPMTCPFQYYVYKANQHSYRELPIRYGETSTLFRNEDSGEMHGLTRV 378

Query: 153 REFLMKDAY 161
           R+F + + +
Sbjct: 379 RQFTISEGH 387


>gi|242793409|ref|XP_002482155.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218718743|gb|EED18163.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 593

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 185 PTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTE 244

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y  ++  L
Sbjct: 245 ESAAEEVLQILDHYAHVYEDL 265


>gi|310779473|ref|YP_003967806.1| threonyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748796|gb|ADO83458.1| threonyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 640

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           ++  G   ++P G    + +  + R+E  + G  ++  P + + +LW  SG + +Y +E 
Sbjct: 257 EYGPGFPFFMPKGMTIRNILIDLWRKEHTKAGYEQIMTPIMLNKELWETSGHWYNY-REN 315

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           +  ++ ++      P +       ++  + SY++LP    ++    R E      G+MR 
Sbjct: 316 MYTSEIDETEFAIKPMNCPGGVLAYKQEMHSYKDLPIRAGELGTVHRHEFSGALHGLMRV 375

Query: 153 REFLMKDAYSFDLTPE 168
           R F   DA+ F +TPE
Sbjct: 376 RSFTQDDAHIF-MTPE 390


>gi|219849360|ref|YP_002463793.1| prolyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|259511579|sp|B8G3V5|SYP_CHLAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219543619|gb|ACL25357.1| prolyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 480

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++ G     G  ++     TF        Y    S+G+ + R++ A+I +  D +G++
Sbjct: 223 RALQAGTSHNLGQNFARAFDITFTDQHNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLV 281

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQI--GSQFAVA 395
            P  +AP ++ ++ I  +D+  R A  +   R++    G   F  D  +    G +F   
Sbjct: 282 LPPRLAPIQVVVVPIYKNDEE-RSAVMEAVNRMTAAWKGRLRFKVDDRDTYSPGYKFNEW 340

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +L G P+++ +G K V+   V +  R
Sbjct: 341 ELKGVPVRIEIGPKDVAKETVALARR 366


>gi|255957075|ref|XP_002569290.1| Pc21g23230 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591001|emb|CAP97220.1| Pc21g23230 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 515

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 71/352 (20%), Positives = 134/352 (38%), Gaps = 49/352 (13%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 67  YSPGSPLFLPNGTHVVNKLISFLRTQYLQYGFREVLTPTIYKKSLWEISGHWQNYKDDMY 126

Query: 95  RLADRN-----------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR++P  +       R+E+
Sbjct: 127 EVTGRGASGEADGEVGEDESYGLKPMNCPGHCLLFKSQNHSYRDMPVRYADFSPLHRNEV 186

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R F   D + F       +    K  ++    F  + +K+  +    GP 
Sbjct: 187 SGSLTGLTRVRRFHQDDGHIF------CRRQQIKSEIASALGFVDMAMKTFGL----GPY 236

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT------APY 256
                   +VL+   ET    + +  D      N +     +L+S   +W       A Y
Sbjct: 237 R-------LVLSTRPETDYIGTLEMWD------NAEMQLREALDSTGREWALNEGDGAFY 283

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT--FKGADGKDHYVQM 314
               D+   +L D   +  ++S   +++     FG +Y +  S         G    V +
Sbjct: 284 GPKIDI---QLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAESEPDYNPATPGVATPVMI 340

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                G++    A++   H G    WP  ++P +  ++ +   D V R A E
Sbjct: 341 HRAIFGSLERFLALLIEQHGGH---WPFWLSPRQAIVLTVNQDDAVVRQAQE 389


>gi|156053914|ref|XP_001592883.1| hypothetical protein SS1G_05805 [Sclerotinia sclerotiorum 1980]
 gi|154703585|gb|EDO03324.1| hypothetical protein SS1G_05805 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 536

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G +    +   +  + +  G  E+  PT+    LW +SG +++Y ++M 
Sbjct: 80  YSPGSPLFLPKGARMFKALTEFLSAQYSHFGFEEVITPTIYKKSLWEKSGHWENYAEDMY 139

Query: 95  RLADRNDKAMI----------YG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            +  R                YG  P +      IF S  +SYR +P  +       R+E
Sbjct: 140 SVIGRGASGETVEGQKGENEEYGLKPMNCPGHCLIFASKQRSYREMPIRYTDFSPLHRNE 199

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           +     G+ R R F   D + F   P   K   +K        +  LGL
Sbjct: 200 ISGALSGLTRVRRFHQDDGHIF-CRPSQIKEEISKTLEFVKMTYSTLGL 247


>gi|222446040|ref|ZP_03608555.1| hypothetical protein METSMIALI_01689 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435605|gb|EEE42770.1| hypothetical protein METSMIALI_01689 [Methanobrevibacter smithii
           DSM 2375]
          Length = 564

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 56/100 (56%), Gaps = 2/100 (2%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           SVAP ++ +  +  + +  R+   +I  +L + G  V +D  G  IG ++A AD +G PL
Sbjct: 466 SVAPVQVGIYPL-VNKEGPREIAIEITDKLRESGFKVEYDVSG-TIGKRYARADEIGIPL 523

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + V    + D+K+ +++R +  +E ++++E+ +Y    +
Sbjct: 524 AITVDFDSLEDNKITVRNRDSEAQERIAIDEIKDYLEEYY 563


>gi|218282283|ref|ZP_03488582.1| hypothetical protein EUBIFOR_01164 [Eubacterium biforme DSM 3989]
 gi|218216751|gb|EEC90289.1| hypothetical protein EUBIFOR_01164 [Eubacterium biforme DSM 3989]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++AP+K++++ +    +   D  ++++A+LSK    V +DD  + IG ++   D +G P 
Sbjct: 380 ALAPYKVAVLPLS---KKLSDQGDEVFAKLSK-HFSVTYDD-AQSIGKRYRRQDAIGTPF 434

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V V  +  +D  V I+ R T  +E ++L+++++Y  +R +
Sbjct: 435 CVTVDFETANDGCVTIRDRDTMQQERVALDDLVSYIENRIA 475


>gi|323142407|ref|ZP_08077233.1| threonine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413100|gb|EFY03993.1| threonine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 597

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +G+   LP G + +  +   + + + + G +    P +   DL+  SG +D Y   M  L
Sbjct: 210 QGLPILLPKGARVIQLLQRWVEDVEQKRGYLLTKTPLMAKRDLYRISGHWDHYLDGMFIL 269

Query: 97  ADRND---KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
            D +D   +     P        +F +  +SYR LP    +    FR+E      G++R 
Sbjct: 270 GDPHDETKECFALRPMTCPFQYQVFLNRQRSYRELPMRLGETSTLFRNEDSGEMHGLIRV 329

Query: 153 REFLMKDAY 161
           R+F + + +
Sbjct: 330 RQFTISEGH 338


>gi|238504368|ref|XP_002383415.1| prolyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|220690886|gb|EED47235.1| prolyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 514

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P  E V+    R  IKS+R+LP    Q  ++F+ E  P+  ++RS E+L+++ +S  +T 
Sbjct: 98  PNAESVIYPYCRKWIKSHRDLPLRMNQWCIRFQHEQNPQ-PLLRSCEYLLQEVHSAHITK 156

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           + ++    ++   Y  ++  L
Sbjct: 157 DSARQEAAQILELYSLLYRDL 177


>gi|227830722|ref|YP_002832502.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|229579616|ref|YP_002838015.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|229581718|ref|YP_002840117.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284998235|ref|YP_003420003.1| Anticodon-binding domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227457170|gb|ACP35857.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|228010331|gb|ACP46093.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|228012434|gb|ACP48195.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284446131|gb|ADB87633.1| Anticodon-binding domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PD + P ++ L+ +K       D   ++  RL K G  V  DD+ + +G++   A     
Sbjct: 270 PDWLNPIQVRLLPVKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTEWI 326

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           P  +I+G + V  S + +K R    ++ MS+EE++
Sbjct: 327 PFVIIIGEREVKTSTLTVKIRANNEQKSMSVEELV 361


>gi|289613106|emb|CBI59922.1| unnamed protein product [Sordaria macrospora]
          Length = 733

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +++E ++      + +G+I +P +VAP K+ ++ + + D+       ++
Sbjct: 575 SFGIG--RILYSLLEHNYWVREGDEARGVISFPPAVAPVKVLIVPLSSKDEFA-PHVRRL 631

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +L  VG     DD    IG ++A  D LG P  + +  + + D    ++ R
Sbjct: 632 SQKLRSVGISSRVDDSSASIGRRYARNDELGTPFGLTIDFQTLQDGTFTLRER 684



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           N+PF    I   +R+E+ PR G++R REFLM +   F       KH
Sbjct: 310 NMPFASASIGKSYRNEIAPRGGLLRVREFLMAEIEHFVDPASNKKH 355


>gi|150396275|ref|YP_001326742.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166225503|sp|A6U8C7|SYT_SINMW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150027790|gb|ABR59907.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 660

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 18/211 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L E    AE   H+ + R   + H  +   G+  W   G +   ++ A +R  +  
Sbjct: 234 YLHVLAE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRR-RLE 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 289 GDYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
               L ++   G K I ++  + P   +G D
Sbjct: 408 NDLILSVYEDFGFKEIVVKLSTRPEKRVGSD 438


>gi|242046134|ref|XP_002460938.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
 gi|241924315|gb|EER97459.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
          Length = 648

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +  ADLW  SG  D Y + M    D  D+     P +      +++  + SYR+ 
Sbjct: 303 LYTPHVAKADLWKISGHIDFYKESMYNQMDVEDEMYQLRPMNCPYHILVYKRKLHSYRDF 362

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDL 165
           P    ++   +R EL     G+ R R F   DA+ F L
Sbjct: 363 PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL 400


>gi|311113703|ref|YP_003984925.1| threonine--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310945197|gb|ADP41491.1| threonine--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 678

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 18/152 (11%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEM-----LRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +S P +   DL+  SG    Y   M     L   +   KAM   P H E    I+RS  +
Sbjct: 316 VSTPHISKEDLFYTSGHLPYYADGMFPAMVLDNGNYRLKAM-NCPMHNE----IYRSRGR 370

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF---DLTPEGSKHSYNKMFV 179
           SYR LP  F++    +RDE      G+ R R     D++S+   +  P+  +H  N M  
Sbjct: 371 SYRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSYVTKEQAPDEVRHLLNFM-- 428

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             L +    G+    +   +    GD   +FI
Sbjct: 429 --LSLLEDFGMTDFYLELSTRDTEGDKKDKFI 458


>gi|110639855|ref|YP_680065.1| glycyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282536|gb|ABG60722.1| glycyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 504

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++AP K +++ I   D +   A E IY  L K    V ++D  + IG ++   DL+G P 
Sbjct: 399 TLAPIKAAILPITKKDGLPEKAME-IYNEL-KYDIKVTYED-KDSIGKRYTRNDLIGTPF 455

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            + V  + + D+ V I+HR T ++E + + E+
Sbjct: 456 CIAVDHQTLEDNTVTIRHRDTTLQERVPISEL 487


>gi|219128900|ref|XP_002184639.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403748|gb|EEC43698.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 479

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 5/159 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S R I+       G  +      +F+   G+       S+G+   R +  ++    D  G
Sbjct: 196 SGRAIQGATSHNLGQNFGKMFEISFQNEKGESQIPWQTSWGL-TTRTIGVMVMVHGDDTG 254

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
           ++ P  VAP ++ ++ I +       A   C  I A L K G    +DD      G ++ 
Sbjct: 255 LVLPPRVAPLQVVIVPIISKKLTPEQADPYCLSILADLKKAGLRAKYDDRSAYNPGWKYN 314

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +  G P+++ VG + +      +  R    +ED  +E
Sbjct: 315 HWEQKGVPVRIEVGPRDIEQKSARVVVRHNSDKEDHPVE 353


>gi|71019463|ref|XP_759962.1| hypothetical protein UM03815.1 [Ustilago maydis 521]
 gi|46099508|gb|EAK84741.1| hypothetical protein UM03815.1 [Ustilago maydis 521]
          Length = 536

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 33/166 (19%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + H+ S G    LP G +    V  ++R+  +  G  E+  P L    LW  SG +D+Y 
Sbjct: 77  LTHESSPGTPFILPHGMRLARKVERVVRDLYDVYGYDEVQSPQLYKTSLWKRSGHWDNYR 136

Query: 91  KEML-------RLAD-----RNDKAMIYGPTHEEVMTD--------------------IF 118
            +M        R +      R     I+ PT     T                     IF
Sbjct: 137 DDMFAAEGYKERFSSSIDDRRTSCCSIHPPTSATEATAANAEDESFGLKPMNCPGHCLIF 196

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            S  +SYR+LP  + +     R+E      G+ R R F   DA+ F
Sbjct: 197 GSSERSYRDLPIRYAEFSPLHRNEASGALTGLTRVRRFHQDDAHVF 242


>gi|213403478|ref|XP_002172511.1| cytoplasmic proline-tRNA ligase Prs1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000558|gb|EEB06218.1| cytoplasmic proline-tRNA ligase Prs1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 711

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 307 PTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAFLTK 366

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +    + +   Y R++  L
Sbjct: 367 EEADKEVHYILDLYSRVYSDL 387


>gi|110633361|ref|YP_673569.1| threonyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123058100|sp|Q11JM1|SYT_MESSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110284345|gb|ABG62404.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chelativorans
           sp. BNC1]
          Length = 656

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 14/166 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G +   N+ + +R   + 
Sbjct: 235 YLQMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWRMFQNLVSYMRRRLDG 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M ++   +++A         P +      IF
Sbjct: 291 VYQ-EVNAPQVLDHSLWQTSGHWGWYKENMFKVECADEEAEDKRTFALKPMNCPGHVQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F
Sbjct: 350 KHGLKSYRDLPIRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF 395


>gi|218677881|ref|ZP_03525778.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 340

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 23/192 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESGRYDS 88
             +   G+  W   G +    + A +R    R  A+   E++ P +    LW  SG +  
Sbjct: 145 FQEEGPGVVFWHGKGWRIFQTLVAYMR----RRLAVDYEEVNAPQVLDTSLWETSGHWGW 200

Query: 89  YGKEMLRLA-----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           Y + M  +            + +++     P +      IF+  +KSYR LP    +  L
Sbjct: 201 YQENMFAVKSAHAMTHSEDKEADNRVFALKPMNCPGHVQIFKHGLKSYRELPIRLAEFGL 260

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R E      G+MR R F   DA+ F  T E       K+    L ++   G K I ++
Sbjct: 261 VHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDLILSVYEDFGFKEIVVK 319

Query: 197 AESGP---IGGD 205
             + P   +G D
Sbjct: 320 LSTRPEKRVGSD 331


>gi|217031455|ref|ZP_03436960.1| hypothetical protein HPB128_21g13 [Helicobacter pylori B128]
 gi|216946655|gb|EEC25251.1| hypothetical protein HPB128_21g13 [Helicobacter pylori B128]
          Length = 50

 Score = 43.1 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWL 43
          M  SK F P L+E P+DA + SHK + + G I+Q   GIY++L
Sbjct: 1  MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFL 43


>gi|50552312|ref|XP_503566.1| YALI0E05027p [Yarrowia lipolytica]
 gi|49649435|emb|CAG79147.1| YALI0E05027p [Yarrowia lipolytica]
          Length = 517

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 41/81 (50%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 121 PTSETVMYPYYAKWVRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTA 180

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           + ++     +  +Y +I+  L
Sbjct: 181 KEAEDEVMAILDNYEKIYSEL 201


>gi|156083086|ref|XP_001609027.1| glycyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154796277|gb|EDO05459.1| glycyl-tRNA synthetase, putative [Babesia bovis]
          Length = 733

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG  +LD+V   IRE  N T  I   +      +L  E+    + G +  +    N    
Sbjct: 240 LGNMSLDDVENFIRE-NNITSPIGNELSKPYPFNLMFET----TIGPKSRQKGGINSVVY 294

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
           +   T + +  +  +    +   +P    QI L FR+E+ PR G++R REFLM +   F 
Sbjct: 295 LRPETAQGIFVNFAKLLESNGGKMPLAAAQIGLGFRNEISPRNGLLRVREFLMAEVEYF- 353

Query: 165 LTPEGSKHS 173
           + P+   H+
Sbjct: 354 VHPKNKTHA 362


>gi|15238286|ref|NP_196649.1| tRNA synthetase-related / tRNA ligase-related [Arabidopsis
           thaliana]
 gi|8979722|emb|CAB96843.1| putative protein [Arabidopsis thaliana]
 gi|332004222|gb|AED91605.1| tRNA synthetase/ligase-related protein [Arabidopsis thaliana]
          Length = 309

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI-----KAHDQVCRDACEKIYARLSKVGCDVFW 381
           A   +  D KG+++P  VAP ++ +I++       + ++C DACE + + L   G     
Sbjct: 86  AACMTHGDDKGLVFPPKVAPVQVVVIHVPIKGAADYQELC-DACEAVESTLLGAGIRAEA 144

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           D       G ++A  +L G PL++  G + +++ +V I  R  G + D+   ++I 
Sbjct: 145 DIRDNYSCGWKYADQELTGVPLRIETGPRDLANDQVRIVTRDNGAKMDVKRGDLIE 200


>gi|229585254|ref|YP_002843756.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238620213|ref|YP_002915039.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.4]
 gi|228020304|gb|ACP55711.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238381283|gb|ACR42371.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PD + P ++ L+ +K       D   ++  RL K G  V  DD+ + +G++   A     
Sbjct: 270 PDWLNPIQVRLLPVKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTEWI 326

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           P  +I+G + V  S + +K R    ++ MS+EE++
Sbjct: 327 PFVIIIGEREVKTSTLTVKIRANNEQKSMSVEELV 361


>gi|16553656|dbj|BAB71554.1| unnamed protein product [Homo sapiens]
          Length = 433

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H  S G   +LP G    + +   IREE ++    E+  P + ++ LW  SG +  Y 
Sbjct: 44  FFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTEVLSPNMYNSKLWEASGHWQHYS 103

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M       D      P +      +F    +S+R +P       +  R+EL     G+
Sbjct: 104 ENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREMPIRCADFGVLHRNELSGTLSGL 162

Query: 150 MRSREFLMKDAYSF 163
              R F   DA+ F
Sbjct: 163 TGVRRFQQDDAHIF 176


>gi|145230415|ref|XP_001389516.1| threonyl-tRNA synthetase [Aspergillus niger CBS 513.88]
 gi|134055633|emb|CAK37279.1| unnamed protein product [Aspergillus niger]
          Length = 526

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ +   +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 77  YSPGSPLFLPNGTHIINKLITFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 136

Query: 95  RLADRN-----------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 137 EVRGRGATGDTDGEAGEDESYGLKPMNCPGHCLLFKSQTHSYRELPIRYADFSPLHRNEV 196

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 197 SGSLSGLTRVRRFHQDDGHIF 217


>gi|167755650|ref|ZP_02427777.1| hypothetical protein CLORAM_01165 [Clostridium ramosum DSM 1402]
 gi|167704589|gb|EDS19168.1| hypothetical protein CLORAM_01165 [Clostridium ramosum DSM 1402]
          Length = 457

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFP 401
           SVAPFK++++ +        D   +IY +L+K   C+    D+  QIG ++   D +G P
Sbjct: 361 SVAPFKVAILPLTKKQS---DKATEIYGQLAKYFNCEY---DVAGQIGKRYRRQDAIGTP 414

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V V    + D  V ++ R T  +  + + ++++Y S + +
Sbjct: 415 YCVTVDFDTMEDETVTVRDRDTMEQIRLPINQLVDYISKKIT 456


>gi|269986430|gb|EEZ92716.1| threonyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 635

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           E+  P +   DLW  SG +D Y + M R+    +D+     P +      +F+S  +SYR
Sbjct: 282 EIITPIIAKIDLWKISGHFDKYKENMFRVTPFESDEEYGLKPMNCPFSALLFKSKTRSYR 341

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +LP          R EL     G++R+R     D++ + +T E  +    +MF
Sbjct: 342 DLPMRLSDYGFLHRYELEGTLDGLLRTRLMEQNDSHVY-VTEEQIESEIIRMF 393


>gi|227827985|ref|YP_002829765.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.14.25]
 gi|227459781|gb|ACP38467.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.14.25]
          Length = 386

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PD + P ++ L+ +K       D   ++  RL K G  V  DD+ + +G++   A     
Sbjct: 270 PDWLNPIQVRLLPVKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTEWI 326

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           P  +I+G + V  S + +K R    ++ MS+EE++
Sbjct: 327 PFVIIIGEREVKTSTLTVKIRANNEQKSMSVEELV 361


>gi|116206210|ref|XP_001228914.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
 gi|88182995|gb|EAQ90463.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
          Length = 1620

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 312  VQMGSYGIGAMRVVAAVIESSH-----DGKGIIW--PDSVAPFKISLINIKAHDQVCRDA 364
            V   S+GIG  R++ +++E  +     D    ++  P +VAP K+ ++ + ++ Q+    
Sbjct: 1459 VNEPSFGIG--RILYSLLEQVYWYRPDDAARAVFSLPLAVAPNKVLIVPLYSNPQL-NPI 1515

Query: 365  CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              K+ ARL K+G     D     IG + A  D LG PL V V  + + D  V ++ R + 
Sbjct: 1516 THKLSARLRKMGITNIIDASSASIGKRCARNDELGIPLGVTVDFQTLRDGSVTLRERDSM 1575

Query: 425  IREDMSLEEVI 435
             +   S E+V+
Sbjct: 1576 FQVRGSEEDVV 1586


>gi|66359666|ref|XP_627011.1| glycyl-tRNA synthetase [Cryptosporidium parvum Iowa II]
 gi|46228457|gb|EAK89327.1| glycyl-tRNA synthetase [Cryptosporidium parvum Iowa II]
          Length = 656

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)

Query: 99  RNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +ND      P T + +  +  R +  + + LPF+  QI L FR+E+ PR G++R REF M
Sbjct: 186 KNDSVGFMRPETAQGIFVNFKRLYEYNGKKLPFSVAQIGLGFRNEIAPRNGLLRVREFQM 245

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
            +   F + P+   H            F  + LK +P+
Sbjct: 246 AEIEHF-IHPDRKDHPK----------FDDVALKCLPL 272


>gi|26553728|ref|NP_757662.1| threonyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|26453735|dbj|BAC44066.1| threonyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 566

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 10/107 (9%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H+  +G+Y     R +A ++  +   KG++ P  +AP +IS+I +  ++ +  D C+KI 
Sbjct: 442 HFGVIGTYE----RFIATLLSQT---KGLL-PFWLAPVQISIIPV--NNNIHLDYCKKIA 491

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           + L +    V  DD  E++  +   A +   P Q+++G   + ++++
Sbjct: 492 SELEENNIRVKLDDSNERLAKKIREAQISKIPFQLVIGDNEIKNNEI 538


>gi|313665156|ref|YP_004047027.1| threonine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949904|gb|ADR24500.1| threonine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G    + +   +R+++     I +  P + + +L+  SG +D YG++M +  
Sbjct: 257 GLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIGTVELYKTSGHWDHYGEDMFQPF 316

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                +D+  I  P +      +++   +SYR+LP    +  ++ R E      G+ R R
Sbjct: 317 NGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRICEHAIQHRFESSGSLTGLERVR 376

Query: 154 EFLMKDAYSF 163
              + D++ F
Sbjct: 377 GMKLTDSHIF 386


>gi|84490351|ref|YP_448583.1| threonyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|121731075|sp|Q2NE13|SYT_METST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84373670|gb|ABC57940.1| ThrS [Methanosphaera stadtmanae DSM 3091]
          Length = 614

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 323 RVVAAVIESSHDGKG--IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           RV+ +++E +   KG     P  +AP ++ +I +  +     D  ++IY ++      V 
Sbjct: 475 RVICSLLEKTSTDKGNKPSLPLWLAPTQVRIIPVTDNHL---DYAKEIYQQIRDSNIRVD 531

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            DD  E++G +   A     P  ++VG   V ++ + +  R+   +E++S+E++
Sbjct: 532 IDDTAERVGKKIRNAGKEWIPYTIVVGDNEVENNSISVNRRVDNTKEEISIEDL 585


>gi|83764519|dbj|BAE54663.1| unnamed protein product [Aspergillus oryzae]
          Length = 512

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P  E V+    R  IKS+R+LP    Q  ++F+ E  P+  ++RS E+L+++ +S  +T 
Sbjct: 116 PNAESVIYPYCRKWIKSHRDLPLRMNQWCIRFQHEQNPQ-PLLRSCEYLLQEVHSAHITK 174

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           + ++    ++   Y  ++  L
Sbjct: 175 DSARQEAAQILELYSLLYRDL 195


>gi|320041027|gb|EFW22960.1| glycyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 698

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E  +      + +G++ +P   AP K+ L+ + +H Q  +    K+
Sbjct: 546 SFGIG--RILYCLMEHVYWSREGDEARGVLSFPPLAAPTKVLLVPLSSH-QSFQPLVRKL 602

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R +  +  
Sbjct: 603 TLKLRRMGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDSMKQVR 662

Query: 429 MSLEEV 434
            S EE+
Sbjct: 663 ASEEEI 668



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + P+G K     H      +S
Sbjct: 280 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPQGGKKHPRFHEVENTELS 338

Query: 181 YLRIFHRLGLKSIPMRAESG 200
           +L    +L   + P+R   G
Sbjct: 339 FLSREIQLSGSTKPLRMTIG 358


>gi|284166054|ref|YP_003404333.1| threonyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284015709|gb|ADB61660.1| threonyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 649

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+  L  +   + +     G   +  P +   DLW  SG Y++Y  +M  + 
Sbjct: 270 GLPLYHPPGKTVLKELEDFVEDLNKDAGYDYVETPHVFKTDLWHRSGHYENYQDDMF-IF 328

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  D      P +      IF+    SYR+LP  + +    +R E R    G+ R   F 
Sbjct: 329 DVGDDEFGLKPMNCPGHAAIFQDQSWSYRDLPIRYAENGKVYRKEQRGELSGLSRVWAFT 388

Query: 157 MKDAYSFDLTPEGSKHSYNK---MFVSYLRIF---HRLGLKSIPMRA 197
           + D + F + P+  +    +   M    L  F   + + L + P ++
Sbjct: 389 IDDGHLF-IRPDQIRQEVEEIMDMITDVLETFDLEYEMALATRPEKS 434


>gi|209549439|ref|YP_002281356.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065117|sp|B5ZQK2|SYT_RHILW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209535195|gb|ACI55130.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 668

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 16/153 (10%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEEVMTD 116
           E++ P +    LW  SG +  Y + M  +            + +++     P +      
Sbjct: 293 EVNAPQVLDTALWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCPGHVQ 352

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F  T E       
Sbjct: 353 IFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECL 411

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
           K+    L ++   G K I ++  + P   +G D
Sbjct: 412 KINDLILSVYEDFGFKEIVVKLSTRPEKRVGSD 444


>gi|118102209|ref|XP_001233746.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 510

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 2/133 (1%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H  S G   +LP G    + +   IR E    G  E+  P + S  LW  SG +  Y  
Sbjct: 275 FHALSPGSCFFLPRGAHIYNTLVDFIRSEYQVRGFNEVVTPNIFSPRLWELSGHWQHYSA 334

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M        + +   P +      +F    +S+R LP       +  R+E      G+ 
Sbjct: 335 HMFSFTA-GTETLSLKPMNCPAHCLMFAHRPRSWRELPLRLADFGVLHRNEPPGSLTGLT 393

Query: 151 RSREFLMKDAYSF 163
           R R F  +DA+ F
Sbjct: 394 RVRRFQQEDAHIF 406


>gi|84999162|ref|XP_954302.1| glycyl-tRNA synthetase  [Theileria annulata strain Ankara]
 gi|65305300|emb|CAI73625.1| glycyl-trna synthetase, putative [Theileria annulata]
          Length = 796

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 316 SYGIGAMRVVAAVIESSH-----------DGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           S+G+G  R++ +++E S+           + K +    S+AP K S++ + +  +V    
Sbjct: 641 SFGLG--RLIFSILEHSYRVRPVDVNVPEERKYVALNKSIAPTKCSVLPLSSK-EVFEPL 697

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++ A L ++G     D  G  IG ++A  D +G P  V +  + V+D  V ++ R T
Sbjct: 698 ITRVQAHLRRLGISHKVDKTGASIGKRYARTDEIGIPFCVTLDFQSVNDDTVTLRERDT 756


>gi|313889655|ref|ZP_07823298.1| serine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121952|gb|EFR45048.1| serine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 425

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   LAD N    +  PT E  +T+ +
Sbjct: 183 DEHAKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFELADTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYDEL 298

Query: 175 NKMFVSYLRIFHRLGL 190
            KM  +   I  +L L
Sbjct: 299 EKMTTNAENILQKLEL 314


>gi|317138097|ref|XP_001816665.2| prolyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 558

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P  E V+    R  IKS+R+LP    Q  ++F+ E  P+  ++RS E+L+++ +S  +T 
Sbjct: 98  PNAESVIYPYCRKWIKSHRDLPLRMNQWCIRFQHEQNPQ-PLLRSCEYLLQEVHSAHITK 156

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           + ++    ++   Y  ++  L
Sbjct: 157 DSARQEAAQILELYSLLYRDL 177


>gi|303319141|ref|XP_003069570.1| glycyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109256|gb|EER27425.1| glycyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 698

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E  +      + +G++ +P   AP K+ L+ + +H Q  +    K+
Sbjct: 546 SFGIG--RILYCLMEHVYWSREGDEARGVLSFPPLAAPTKVLLVPLSSH-QSFQPLVRKL 602

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R
Sbjct: 603 TLKLRRMGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDR 655



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + P+G K     H      +S
Sbjct: 280 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPQGGKKHPRFHEVENTELS 338

Query: 181 YLRIFHRLGLKSIPMRAESG 200
           +L    +L   + P+R   G
Sbjct: 339 FLSREIQLSGSTKPLRMTIG 358


>gi|42560810|ref|NP_975261.1| threonine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492306|emb|CAE76903.1| threonine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321098|gb|ADK69741.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G    + +   +R+++     I +  P + + +L+  SG +D YG++M +  
Sbjct: 257 GLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIGTVELYKTSGHWDHYGEDMFQPF 316

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                +D+  I  P +      +++   +SYR+LP    +  ++ R E      G+ R R
Sbjct: 317 NGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRICEHAIQHRFESSGSLTGLERVR 376

Query: 154 EFLMKDAYSF 163
              + D++ F
Sbjct: 377 GMKLTDSHIF 386


>gi|238484021|ref|XP_002373249.1| threonyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220701299|gb|EED57637.1| threonyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 526

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 77  YSPGSPLFLPNGTHVINKLVSFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 136

Query: 95  RLADRN-----------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 137 EVRGRGAMGETEGEAGEDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEV 196

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 197 SGSLSGLTRVRRFHQDDGHIF 217


>gi|289619828|emb|CBI54111.1| unnamed protein product [Sordaria macrospora]
          Length = 542

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADL 79
            +++L+  +I  +++  G +   P      + +    +E  +  G  E + P  L    L
Sbjct: 62  QEVVLKAELIEYYTEISGFFIMRPATMYIWNVIRKWFQEHIDELGVEETNFPMFLSQKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LPF   Q 
Sbjct: 122 EKEKEHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYAKWIRSHRDLPFRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
               R E +     +R+REF+ ++ ++  LT + +
Sbjct: 182 NSVVRWEAKQTTPFLRAREFMWQEGHTAHLTEQAA 216


>gi|307595064|ref|YP_003901381.1| Threonyl-tRNA synthetase editing domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307550265|gb|ADN50330.1| Threonyl-tRNA synthetase editing domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 621

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 18/177 (10%)

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RV 324
           + D L   + ++    +VG+   FG KY        +  +G+  Y V + +  IG++ R 
Sbjct: 427 IVDELRRPREIATFQFDVGNAQRFGIKY--------RDENGEVKYPVIIHTAIIGSVERY 478

Query: 325 VAAVIESSH--DGKGII--WPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDV 379
           + A+++++   + +G +   P  V+P ++ +I I K H     D   K+  R+ +V  D 
Sbjct: 479 IYALLDTAAIAESRGEVPRLPTWVSPVQVRVIPISKEHLAFANDIASKLEDRMIRVDID- 537

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             D   E +  +   A+    P  V+VG + V   K+ ++ R T    DM ++E+I+
Sbjct: 538 --DRFDETLAKRVRDAETFWVPYIVVVGDREVKTGKLSVRVRGTQKPIDMGVDELIS 592


>gi|169767186|ref|XP_001818064.1| threonyl-tRNA synthetase [Aspergillus oryzae RIB40]
 gi|83765919|dbj|BAE56062.1| unnamed protein product [Aspergillus oryzae]
          Length = 526

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 77  YSPGSPLFLPNGTHVINKLVSFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 136

Query: 95  RLADRN-----------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 137 EVRGRGAMGETEGEAGEDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEV 196

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 197 SGSLSGLTRVRRFHQDDGHIF 217


>gi|256384406|gb|ACU78976.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385238|gb|ACU79807.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455488|gb|ADH21723.1| threonine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           G+  WLP G    + +   +R+++     I +  P + + +L+  SG +D YG++M +  
Sbjct: 257 GLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIGTVELYKTSGHWDHYGEDMFQPF 316

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                +D+  I  P +      +++   +SYR+LP    +  ++ R E      G+ R R
Sbjct: 317 NGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRICEHAIQHRFESSGSLTGLERVR 376

Query: 154 EFLMKDAYSF 163
              + D++ F
Sbjct: 377 GMKLTDSHIF 386


>gi|322707504|gb|EFY99082.1| threonyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 563

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 25/154 (16%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G +  + +   IR++  R G  E+  PT+    LW +SG  ++Y  +M 
Sbjct: 129 YSPGSPIFLPNGARIFNRLIDFIRKQYARYGFQEVITPTIYKKALWAKSGHLENYADDMY 188

Query: 95  RLADRN---DK------AMIYGPTHEEVMTD---------------IFRSHIKSYRNLPF 130
            +       DK         +GP   ++  D               IF S + SYR LP 
Sbjct: 189 TVTGNTSTPDKDGGGCCGGDHGPAEPDLEADNEYGLKPMNCPGHCLIFASRVHSYRELPV 248

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            +       R+E+     G+ R R F   D + F
Sbjct: 249 RYADFSPLHRNEISGALSGLTRVRRFHQDDGHIF 282


>gi|240103794|ref|YP_002960103.1| glycyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|259511936|sp|C5A1H0|SYG_THEGJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|239911348|gb|ACS34239.1| Glycyl-tRNA synthetase (glyS) [Thermococcus gammatolerans EJ3]
          Length = 570

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           + K  +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   +
Sbjct: 157 DQKGYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAE 216

Query: 160 AYSFDLTPEGSKHS-YNKMFVSYLRIF---HRL-GLKSIPMRAESGPIGGDLSHEFIVLA 214
           A  F   P  ++H  ++++    LR++   H+L  L  I + AE     G + + F    
Sbjct: 217 AEIF-FNPSETEHPHFDEVKNEKLRLYPIEHQLKNLGEIELTAEEAVKKGYIMNTFFAY- 274

Query: 215 DTGETQVFCSKDFMDFPIPSENTDF 239
                 V   +  +D  IP +   F
Sbjct: 275 ----YMVMVKRVLLDIGIPEDKIRF 295



 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP +++++ + A + +   A E I+ +L K G  V +D+  + IG ++   D +G P  
Sbjct: 471 MAPIEVAVLPLVAKEPLKSIAYE-IFRKLQKAGFIVVYDEK-DTIGRRYLRYDEIGTPYC 528

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           V + ++   DS V I+ R T  +  +S+EE+
Sbjct: 529 VTIDNQTPEDSTVTIRDRDTREQVRVSIEEL 559


>gi|312137400|ref|YP_004004737.1| histidyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311225119|gb|ADP77975.1| histidyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 423

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 83/418 (19%), Positives = 157/418 (37%), Gaps = 56/418 (13%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
           NV   +R    R G  E+  P  +   L+ ++SG  +   ++M    D+  + +   P  
Sbjct: 22  NVEMKLRNVFERYGYREIKTPIFEHLKLFTIKSG--EEIKEQMYHFKDKGGRNLALRP-- 77

Query: 111 EEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
            E+   I R ++   +  P     Y     FR E RP+ G  R R+F     +  +L   
Sbjct: 78  -ELTAPIARLYVNKLQRFPKPIKMYYFGSCFRYE-RPQAG--RFRQFWQ---FGCELIGG 130

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMR----------AESGPIGGDLSHEFIVLADTGE 218
            S  +  +           LGLK+  +            E   + G+     + L D G+
Sbjct: 131 KSPEAEAETIALAYDCLKELGLKNFKIHIGHMGIVRGMLEENGVKGEKQDHIMTLIDKGD 190

Query: 219 TQVFCSKDFMDFPIPSENTDF--------DDIISLNSIVE--QWTAPYAATSDVHN-EKL 267
            +   S+   +   PSE  +          D   L+ I++   +     A  ++ N E L
Sbjct: 191 KEEL-SRYLNEISFPSELQELLFSLIEMKGDSKILDEILDIVGYRRSVEAIQELKNLESL 249

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--------GSYGI 319
            +       +   GI  G  +Y G  + + +S T     G  + +++          +  
Sbjct: 250 LEVFGVKNYLMDPGIARGLDYYTGIVFEIYISKTQICGGGTYNLIELFGGEKVESTGFAF 309

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+V AV             +    F  + + +       R+A  KI  ++ K G   
Sbjct: 310 GFDRLVEAV------------GNKTEKFSFADVFVAPVSDETREAAFKIAQKIRKSGISA 357

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             D    ++G   + AD LG    +IVG K +   +V +K   +G ++++ ++++ +Y
Sbjct: 358 DVDLSRRKLGKLLSYADHLGVKYTIIVGKKELKQKRVTVKDMESGEQKEVQIDDLSDY 415


>gi|42562400|ref|NP_174280.2| tRNA synthetase class II (G, H, P and S) family protein
           [Arabidopsis thaliana]
 gi|332193023|gb|AEE31144.1| tRNA synthetase class II (G, H, P and S)-like protein [Arabidopsis
           thaliana]
          Length = 463

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           R LPF   Q+   FR+E+ PR G++R+REF + +   F + PE   HS
Sbjct: 257 RKLPFAVAQVGRVFRNEISPRQGLLRTREFTLAEIEHF-VHPEHKSHS 303


>gi|269837371|ref|YP_003319599.1| prolyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269786634|gb|ACZ38777.1| prolyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 483

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++  ++   ++SYR+LP    Q     R E RPR   +RS EFL ++ ++   T 
Sbjct: 114 PTSEAIICPMYARWVQSYRDLPILINQWNSVVRWEERPR-AFLRSLEFLWQEGHTAHATL 172

Query: 168 EGSKHSYNKMFVSYLRIFH-RLGLKSIPMR-AESGPIGGDL 206
           E ++     M   Y       L +  IP R  ES    G L
Sbjct: 173 EEAEERTRLMLEVYRDFVETELAVPVIPGRKTESEKFAGAL 213



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G     G  +       F   +G+  Y    S+G+ + R+V AVI    D +G+  
Sbjct: 228 ALQSGTSHNLGDHFGRVFGIEFLDRNGERRYAFNTSWGL-SFRMVGAVIMVHGDDRGLKL 286

Query: 341 PDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVAD 396
           P  VAP ++ ++ I   ++  +    A +++   L  V   VF D   ++  G +F   +
Sbjct: 287 PPRVAPIQVVIVPIWRKESEREAVEAAVDRVRDALLPVA-RVFVDRRDDKTPGWKFNEWE 345

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L G P+++ +G + V++ +V +  R T  ++ +S+ ++
Sbjct: 346 LKGVPVRLEIGPRDVANDQVTLVRRDTHEKQAISITDL 383


>gi|283796156|ref|ZP_06345309.1| glycine--tRNA ligase [Clostridium sp. M62/1]
 gi|291076375|gb|EFE13739.1| glycine--tRNA ligase [Clostridium sp. M62/1]
 gi|295092207|emb|CBK78314.1| glycyl-tRNA synthetase, dimeric type [Clostridium cf.
           saccharolyticum K10]
 gi|295115529|emb|CBL36376.1| glycyl-tRNA synthetase, dimeric type [butyrate-producing bacterium
           SM4/1]
          Length = 462

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 16/134 (11%)

Query: 319 IGAMRVVAAVIESSHD----GKGII-----WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA RV  A + S++D    G+G +     +  ++AP KI ++ +    +   +  EK+Y
Sbjct: 333 LGADRVTLAFLCSAYDEEEIGEGDVRTVLHFHPAIAPVKIGVLPLS---KKLNEGAEKVY 389

Query: 370 ARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           A LSK   C+  +DD G  IG ++   D +G P  V       +D  V ++ R T  +  
Sbjct: 390 AELSKYYNCE--FDDRG-NIGKRYRRQDEIGTPFCVTYDFDSETDGAVTVRDRDTMEQVR 446

Query: 429 MSLEEVINYASHRF 442
           + + E+ NY   +F
Sbjct: 447 IPIAELKNYFEDKF 460


>gi|290957102|ref|YP_003488284.1| class II tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260646628|emb|CBG69725.1| putative class II tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 27/211 (12%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P   + PR        AE+A +  +  T +I  +  G++      ++    +
Sbjct: 1   MAKAPVLTPRADDFPRWYQDVISKAELADNGPVRGTMVIRPYGYGLW------ERMQQEM 54

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPT 109
           +A I+E   +     + +P    + L  E+   + +  E+  +     K +    +  PT
Sbjct: 55  DARIKETGTQNAYFPLLIP---QSYLAREAEHVEGFAPELAVVTHGGGKDLEEPAVVRPT 111

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY----SFDL 165
            E ++   F   ++SYR+LP    Q     R ELRPR   +R+ EFL ++ +    ++D 
Sbjct: 112 SEMIINASFSKWVQSYRDLPLLINQWANVVRWELRPRL-FLRTSEFLWQEGHTAHATYDE 170

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             + + H + +++  ++   + L +  +P R
Sbjct: 171 ARDFAAHIHRQVYEDFM--VNVLAMDVVPGR 199


>gi|75334470|sp|Q9FXG2|SYGC_ARATH RecName: Full=Putative glycyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Diadenosine tetraphosphate synthetase;
           Short=AP-4-A synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|9972359|gb|AAG10609.1|AC008030_9 Putative glycyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 464

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           R LPF   Q+   FR+E+ PR G++R+REF + +   F + PE   HS
Sbjct: 257 RKLPFAVAQVGRVFRNEISPRQGLLRTREFTLAEIEHF-VHPEHKSHS 303


>gi|261418411|ref|YP_003252093.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767630|ref|YP_004133131.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374868|gb|ACX77611.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112496|gb|ADU94988.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 426

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 96/455 (21%), Positives = 167/455 (36%), Gaps = 70/455 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  +G    LP   +    V  + R   +R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDVLPGDTEKWQYVEHVARNLCSRYGYREIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H +    + P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPHQPLKLYYSGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPM---------- 195
           G  R R+F+      F +   GS       ++    + I+  LGLK I +          
Sbjct: 120 G--RFRQFV-----QFGVEALGSSDPAIDAEVMALAMHIYEALGLKRIRLVINSLGDLDS 172

Query: 196 -RAESGPIGGDLSHEFIVLADTGETQVF--------CSKDFMDFPIPSENTDFDDIISLN 246
            RA    +    S     L    +T++         C KD  D  + +      D ++ +
Sbjct: 173 RRAHREALVRHFSSRIHELCPDCQTRLHTNPLRILDCKKD-RDHELMATAPSILDYLNED 231

Query: 247 S-----IVEQWTA----PYAATS------DVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           S      V+Q+      P+   S      D +N   F+ + E +   A     G   Y G
Sbjct: 232 SRAYFEKVKQYLTNLGIPFVIDSRLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYNG 291

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKIS 350
               +          G      +G + +   R++AA+     D +G+  P +S     + 
Sbjct: 292 LVQEI----------GGPETPGIG-FALSIERLLAAL-----DAEGVELPVESGLDCYVV 335

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  +A D+  R     +YA L + G  V  D +G ++ +Q   AD LG     I+G + 
Sbjct: 336 AVGERAKDEAVR----LVYA-LRRSGLRVDQDYLGRKLKAQLKAADRLGASFVAIIGDEE 390

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +   +  +KH  +G + ++ L E+ ++   R    
Sbjct: 391 LERQEAAVKHMASGEQTNVPLGELAHFLHERIGKE 425


>gi|315612585|ref|ZP_07887498.1| serine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315315566|gb|EFU63605.1| serine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 424

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 40/227 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  ++   + +   G+  +  + IY+++      LD        E  + G  E+  P + 
Sbjct: 154 RGGKVTGARFLFYKGLGARLERAIYNFM------LD--------EHGKEGYTEVITPYMV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + D    +G Y  +  +   L   N    +  PT E  +T+ +R  I   ++LP  F  +
Sbjct: 200 NHDSMFGTGNYPKFKDDTFELKATN---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAM 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +L L 
Sbjct: 257 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPEESYEELEKMTANAENILQKLNL- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
             P R              +V   TG+     +K + ++  IP++NT
Sbjct: 315 --PYR--------------VVALSTGDMGFSAAKTYDLEVWIPAQNT 345


>gi|303318040|ref|XP_003069022.1| threonyl-tRNA synthetase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108703|gb|EER26877.1| threonyl-tRNA synthetase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320036822|gb|EFW18760.1| threonyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 598

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G    + + + +R +  + G  E+  PT+    LW +SG +  Y  +M  +  R    
Sbjct: 157 PDGAHIFNKLMSFLRAQYKQYGFEEVITPTMYKKSLWEKSGHWHIYKDDMYEVRGRGATG 216

Query: 104 MI----------YG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
                       YG  P +      +F S  +SYR+LP  F +     R+E+     G+ 
Sbjct: 217 QTVDVEIGEDEQYGLKPMNCPGHCVLFASKTRSYRSLPVRFAEFSPLHRNEISGSLSGLT 276

Query: 151 RSREFLMKDAYSF 163
           R R F   D + F
Sbjct: 277 RVRRFHQDDGHIF 289


>gi|197294659|ref|YP_001799200.1| glycyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|171853986|emb|CAM11949.1| Glycyl-tRNA synthetase, class II [Candidatus Phytoplasma
           australiense]
          Length = 452

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV-------APFKISLINIKAHDQVCRD 363
           YV   S G+  +  +A +I + H+      P  V       AP+K++++ +   +   + 
Sbjct: 316 YVIEPSLGVERL-FLALLINNYHEDSVNQTPRQVLTFHPFLAPYKVAVLPLIKKEHASK- 373

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I   L K   DV +DD  + IG ++   D++G P  + V  + +  + V +++R T
Sbjct: 374 -AKEIENYLMKY-LDVCYDDT-QSIGKRYRRQDMIGTPFCLTVDHETLEKNTVTLRNRDT 430

Query: 424 GIREDMSLEEVINYA 438
             +E M+LEEV NY 
Sbjct: 431 LKQETMTLEEVKNYV 445


>gi|162452041|ref|YP_001614408.1| prolyl-tRNA synthetase [Sorangium cellulosum 'So ce 56']
 gi|161162623|emb|CAN93928.1| proS [Sorangium cellulosum 'So ce 56']
          Length = 518

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R ++ +I  PT E ++   F S ++SYR+LP    Q     R ELR R   +R+ EFL +
Sbjct: 119 RLEEPLIVRPTSETIIGAAFASWVQSYRDLPLLINQWANVVRWELRTRL-FLRTAEFLWQ 177

Query: 159 DAYSFDLTPEGSKHSYNKMFVSY 181
           + ++   +   ++    +M   Y
Sbjct: 178 EGHTAHASEAEAREETLRMLGVY 200


>gi|298675600|ref|YP_003727350.1| glycyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288588|gb|ADI74554.1| glycyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 582

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH-SYNKMFVSYLRIFH 186
           LPF   QI   +R+E+ PR GV+R REF   +A  F + PE   H  ++K   + L ++ 
Sbjct: 183 LPFGVTQIGKSYRNEISPRQGVIRLREFTQAEAEIF-IPPEDKTHPEFDKYADTVLNMYI 241

Query: 187 RLGLKSI--PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                 +  P+R +     G ++HE++         +  +KDF+
Sbjct: 242 EDDNGGVVRPIRLDDAVKEGYIAHEYLAY------HIALTKDFL 279


>gi|119182388|ref|XP_001242329.1| hypothetical protein CIMG_06225 [Coccidioides immitis RS]
          Length = 654

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVS 180
           +++PF    I   FR+E+ PR G++R REFLM +   F + P+G K     H      +S
Sbjct: 236 QSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPQGGKKHPRFHEVENTELS 294

Query: 181 YLRIFHRLGLKSIPMRAESG 200
           +L    +L   + P+R   G
Sbjct: 295 FLSREIQLSGSTKPLRMTIG 314



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  ++E  +      + +G++ +P   AP K+ L+ + +H Q  +    K+
Sbjct: 502 SFGIG--RILYCLMEHVYWSREGDEARGVLSFPPLAAPTKVLLVPLSSH-QSFQPLVRKL 558

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R
Sbjct: 559 TLKLRRMGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDR 611


>gi|255953035|ref|XP_002567270.1| Pc21g02050 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588981|emb|CAP95102.1| Pc21g02050 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 621

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKFRDELRPRFGVMRSREFLMKD 159
           +K +   PT E VM   +   I+S+R+LP    Q   +  R E +    ++RSREFL ++
Sbjct: 183 EKKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVVRWEFKHPQPLLRSREFLWQE 242

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
            ++  LT   ++     +   Y +I+  L
Sbjct: 243 GHTAHLTEGAAREEVLSILDYYAKIYEEL 271


>gi|27981827|gb|AAM94642.1| prolyl tRNA synthetase [Spironucleus barkhanus]
          Length = 299

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           H E L   +P  K +   GI      + G K++   +  F   +    + +M   GI + 
Sbjct: 32  HTEVLDVVMPCGKVLQTAGIH-----FLGQKFAKVFNIKFIDQNNTQQFAEMTCAGI-ST 85

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R +A  +    D KG++ P  +A +++ L+    +        ++I   L   G   F+D
Sbjct: 86  RALACALSVHGDQKGLMLPSLIAMYQVVLVPCGKYGDDLVLKMKEIQQTLKAAGIRSFFD 145

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSK 409
           D  + +G +    ++ G PL++ +G +
Sbjct: 146 DSKKSMGEKIFHWEMKGVPLRIELGPR 172


>gi|16081356|ref|NP_393684.1| glycyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|10639350|emb|CAC11352.1| glycyl-tRNA synthetase related [Thermoplasma acidophilum]
          Length = 476

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 31 MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
          MI+  S G Y + PLG    DN+ A  + E  R GAI +  P +  AD++  SG  + +
Sbjct: 21 MIYGGSSGFYDYGPLGTLLKDNIIAAWKREYAREGAIFLDTPVISPADVFRASGHLEKF 79


>gi|46125161|ref|XP_387134.1| hypothetical protein FG06958.1 [Gibberella zeae PH-1]
          Length = 663

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 15/180 (8%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-- 311
           A   AT     EKL   L +N  ++     VG      +K S+ +    +  + ++    
Sbjct: 440 AALLATPQEQREKLAKELSDNGSITLEVAGVGDGKVQVSKDSIAIEFRKRVENTREFVPN 499

Query: 312 VQMGSYGIGAMRVVAAVIESS---------HDGKGII-WPDSVAPFKISLINIKAHDQVC 361
           V   S+GIG  R++ +++E S          + +G++ +P  VAP K+ L+ + ++ Q  
Sbjct: 500 VIEPSFGIG--RILYSLMEHSFWTRGTEGGDEARGVLSFPPIVAPTKVLLVPLSSNPQF- 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   +++  RL   G     DD    IG +++  D LG PL + +  +   D  V ++ R
Sbjct: 557 KPLLKQLSQRLRSAGISSRVDDSSASIGKRYSRNDELGTPLGITIDFQTAQDGSVTLRDR 616



 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            +PF    I   +R+E+ PR G++R REFLM +   F + PEG K
Sbjct: 239 QMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHF-VDPEGGK 282


>gi|307352954|ref|YP_003894005.1| glycyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307156187|gb|ADN35567.1| glycyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 572

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 159/409 (38%), Gaps = 95/409 (23%)

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           K  +   T + + TD F   ++ YR+ LPF   QI   +R+E+ PR G++R REF   +A
Sbjct: 157 KGYLRPETAQGIFTD-FNRLLRFYRDKLPFGTVQIGKSYRNEISPRQGMIRLREFTQAEA 215

Query: 161 YSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIV--L 213
             F + P+   H     Y    V  L I  +   +    M  + G   G +++E++   +
Sbjct: 216 EIF-IHPDHKDHPAFSRYADREVPLLSIADQENKECRKEMSMKDGVASGIIANEYVAYYI 274

Query: 214 ADTGETQVFC--------------------SKDFMDFPIPSENTDFDDIIS--------L 245
           A T +  + C                    + D  D  I SE   + +++         L
Sbjct: 275 AQTHDFMLTCGISPDKVRFRQHLPDERAHYATDCWDAEIFSERFGWVEMVGIADRTNYDL 334

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---------SL 296
           N+  +Q   P+          +F    E KR+    + V ++   G KY         +L
Sbjct: 335 NAHAKQSGDPFT---------VFIQYDETKRIRETKV-VANMGALGPKYRNRAKAVADAL 384

Query: 297 PMSA-TFKGA----DGKDHYVQMGSYGIGAMR-------VVAAVIESSHDGKGIIW---- 340
            +S+ +  GA    DG+   V    Y +  +        V+  VIE S+    I++    
Sbjct: 385 AVSSPSENGAEIELDGEKIVVPPEFYEVKEVETEINGEYVMPHVIEPSYGIDRILYAVLE 444

Query: 341 ------------------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                             P  VAP +++++ + A D +  D    I  +L +      +D
Sbjct: 445 HSFDEEMVDGETRNVLRFPPKVAPVQVAVLPLMARDGL-DDIARSIKTKLQEEEILTEYD 503

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTGIREDM 429
           D G  IG ++   D +G P  V V      D+ V ++ R  +  IR D+
Sbjct: 504 DSG-AIGRRYRRQDEIGTPFAVTVDYDTKEDNTVTVRERDSMMQIRYDI 551


>gi|255089463|ref|XP_002506653.1| prolyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226521926|gb|ACO67911.1| prolyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 620

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R R   
Sbjct: 234 GKEL-------EEPLVVRPTSETIVNHMFTQWIQSYRDLPLLINQWANVHRWEMRTR-PF 285

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R+ EFL ++ ++   T E ++    +M   Y R
Sbjct: 286 IRTLEFLWQEGHTAHATGEEAEARAVQMIDCYAR 319



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G     G  +S     TF    G+  +V   S+G+ + R++  +I +  D  G+ 
Sbjct: 357 KALQAGTSHNLGQNFSKAFDTTFLDEKGETRHVYQSSWGV-STRLIGGIIMTHGDDAGLR 415

Query: 340 WPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVA 395
            P  +AP ++ ++ I   ++      DA   I A L+  G  V  DD      G +FA  
Sbjct: 416 LPPELAPIQVVVVPIAQKNKDKAAVADAANAIAATLTNAGIRVKVDDDDRNSPGWKFAQW 475

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++ G P++V VG K V+     +  R
Sbjct: 476 EMKGVPIRVEVGPKDVAKDACVVARR 501


>gi|148643770|ref|YP_001274283.1| seryl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|222444800|ref|ZP_03607315.1| hypothetical protein METSMIALI_00413 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350627|ref|ZP_05976044.1| serine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|148552787|gb|ABQ87915.1| seryl-tRNA synthetase, SerS [Methanobrevibacter smithii ATCC 35061]
 gi|222434365|gb|EEE41530.1| hypothetical protein METSMIALI_00413 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861410|gb|EFC93708.1| serine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 425

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G I +  P     ++  E+     + + + ++AD +   +    T E+ +  + R  I +
Sbjct: 188 GYIPLQTPFFVKGEVAAETSELGEFEETLYKVADED---LYLIATAEQTLAALHRDEIIA 244

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP  +  +   FR E     +   G+ R  +F   + + +  TPE SK+++ K+   
Sbjct: 245 PEDLPIQYCALSTCFRKEAGSHGKDTLGIFRVHQFEKIEQFIY-TTPEESKNAHKKLLEV 303

Query: 181 YLRIFHRLGL 190
              I+ +LGL
Sbjct: 304 TEEIYQKLGL 313


>gi|302670581|ref|YP_003830541.1| glycyl-tRNA synthetase GlyS [Butyrivibrio proteoclasticus B316]
 gi|302395054|gb|ADL33959.1| glycyl-tRNA synthetase GlyS [Butyrivibrio proteoclasticus B316]
          Length = 469

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 19/137 (13%)

Query: 319 IGAMRVVAAVIESSHDGKGIIW---PD---------SVAPFKISLINIKAHDQVCRDACE 366
           +GA RV  A +  ++D + I     PD         ++AP KI ++ +    +   +  E
Sbjct: 337 LGADRVTLAFLCEAYDEENIGTEEKPDMRTVLHFHPALAPVKIGILPLS---KKLNEGAE 393

Query: 367 KIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           KIYA+LS K  C+  +DD G  IG ++   D +G P  +    +  +D+ V ++ R +  
Sbjct: 394 KIYAKLSKKYNCE--FDDRG-NIGKRYRRQDEIGTPFCITYDFESENDNMVTVRFRDSME 450

Query: 426 REDMSLEEVINYASHRF 442
           +E ++++E+  + S +F
Sbjct: 451 QERIAIDELEAFFSDKF 467


>gi|196250095|ref|ZP_03148789.1| histidyl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196210279|gb|EDY05044.1| histidyl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 426

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 165/454 (36%), Gaps = 76/454 (16%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  +G    LP   +    V  + R+   R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDLLPGETEKWQYVEQVARDLCRRYGYEEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H +    N P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPNQPVKLYYAGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPMRAES-GPIGG 204
           G  R R+F+      F +   GS       ++    + I+  LGLK I +   S G +  
Sbjct: 120 G--RFRQFV-----QFGVEAIGSSDPAIDAEVMALAMHIYKALGLKRIRLVINSLGDVDS 172

Query: 205 -------------DLSHEFI----VLADTGETQVF-CSKD-----------FMDFPIPSE 235
                        D  HE      V  +T   ++  C KD            +D+     
Sbjct: 173 RRAHREALVRHFSDRIHELCPDCQVRLETNPLRILDCKKDRDHELMASAPSILDYLNDES 232

Query: 236 NTDFDDIISLNSIVEQWTAPYAATS------DVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              F+ +    ++++    P+   S      D +N   F+ + E +   A     G   Y
Sbjct: 233 RAYFEKVKQYLTMLD---IPFVIDSRLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRY 289

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPF 347
            G    +          G      +G + +   R++AA+     + +GI  P    +  +
Sbjct: 290 NGLVQEI----------GGPETPGIG-FALSIERLLAAL-----EAEGIELPIHRGIDCY 333

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            ++ +  +A D+  R   E     L + G  V  D +G ++ +Q   AD LG     I+G
Sbjct: 334 VVA-VGERAKDETVRLVYE-----LRRAGLRVEQDYLGRKMKAQLKAADRLGASFVAIIG 387

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + +      +KH  +G + D+ L E+ ++   R
Sbjct: 388 DEELEKQTAAVKHMASGEQTDVPLGELASFLIER 421


>gi|67588167|ref|XP_665340.1| glycyl-tRNA synthetase [Cryptosporidium hominis TU502]
 gi|54655979|gb|EAL35110.1| glycyl-tRNA synthetase [Cryptosporidium hominis]
          Length = 593

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 99  RNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +ND      P T + +  +  R +  + + LPF+  QI L FR+E+ PR G++R REF M
Sbjct: 123 KNDSVGFMRPETAQGIFVNFKRLYEYNGKKLPFSVAQIGLGFRNEIAPRNGLLRVREFQM 182

Query: 158 KDAYSFDLTPEGSKH 172
            +   F + P+   H
Sbjct: 183 AEIEHF-IHPDRKDH 196


>gi|256274272|gb|EEU09179.1| Mst1p [Saccharomyces cerevisiae JAY291]
          Length = 429

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G   +LP G K  + +   ++ +Q  + G  E+  P +    LW +SG +++Y  +M 
Sbjct: 55  SPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMF 114

Query: 95  RLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           ++   +++   YG  P +      IF    +SY  LP  F       R+E      G+ R
Sbjct: 115 KVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTR 174

Query: 152 SREFLMKDAYS 162
            R+F   D  S
Sbjct: 175 LRKFHQDDGRS 185


>gi|56971485|gb|AAH88324.1| Eprs protein [Rattus norvegicus]
          Length = 503

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 67/350 (19%), Positives = 127/350 (36%), Gaps = 85/350 (24%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ +S   T 
Sbjct: 111 PTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATF 170

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E +     ++   Y R++    L +IP                +V     E + F   D+
Sbjct: 171 EEAADEVLQILELYARVYEE--LLAIP----------------VVRGRKTEKEKFAGGDY 212

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                    T  +  IS                                 S R I+    
Sbjct: 213 --------TTTLEAFIS--------------------------------ASGRAIQGATS 232

Query: 288 FYFGTKYSLPMSATFK--GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            + G  +S      F+     G+  +    S+G+   R +  +I    D  G++ P  VA
Sbjct: 233 HHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGL-TTRTIGVMIMVHGDNMGLVLPPRVA 291

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--------GSQFAVADL 397
             ++ +I     + +  +  E + A+ ++    +   D+  ++        G +F   +L
Sbjct: 292 SVQVVVIPCGITNTLSEEDREALMAKCNEYRRRLLGADIRARVDLRDNYSPGWKFNHWEL 351

Query: 398 LGFPLQVIVG------SKFV----------SDSKVEIKHRLTGIREDMSL 431
            G P+++ VG       +FV          + ++ E + +L G+ ED+ L
Sbjct: 352 KGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKEAESKLKGVLEDIQL 401


>gi|328876572|gb|EGG24935.1| prolyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 615

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M   + + I+S+R+LP    Q     R E +     +RSREFL ++ ++   T 
Sbjct: 209 PTSETIMYPAYANWIRSHRDLPLKLNQWVNVVRWEFKRPVPFLRSREFLWQEGHTVYATK 268

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +      +   Y R++  L
Sbjct: 269 EEADKEVFNILRLYKRVYEDL 289


>gi|57640913|ref|YP_183391.1| glycyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|73919754|sp|Q5JID8|SYG_PYRKO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|57159237|dbj|BAD85167.1| glycyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 570

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           + K  +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   +
Sbjct: 157 DQKGYLRPETAQGIFVNFRRLNAFARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAE 216

Query: 160 AYSFDLTPEGSKHS-YNKMFVSYLRIF---HRL-GLKSIPMRAESGPIGGDLSHEFIVLA 214
           A  F   P  ++H  ++++    LR++   H+L  L  I + AE     G + + F    
Sbjct: 217 AEIF-FNPNETEHPHFDEVKDEKLRLYPIEHQLKNLSMIELTAEEAVKKGYIMNTFFAY- 274

Query: 215 DTGETQVFCSKDFMDFPIPSENTDF 239
                 V   +  +D  IP +   F
Sbjct: 275 ----YMVMVKRVLLDIGIPEDKIRF 295


>gi|224084293|ref|XP_002191292.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 447

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 2/134 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E    G  E+  P L S  LW  SG +  Y 
Sbjct: 93  FFHKFSPGSCFFLPRGAHVYNTLVEFIRSEYRARGFSEVVTPNLFSPRLWELSGHWQHYS 152

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
             +  +     + +   P +      +F    +S+R LP       +  R+E      G+
Sbjct: 153 PHIFSVPA-APEPLSLKPMNCPAHCLMFAHRPRSWRELPLRLADFGVLHRNEPPGTLTGL 211

Query: 150 MRSREFLMKDAYSF 163
            R R F   DA+ F
Sbjct: 212 TRVRRFQQDDAHIF 225


>gi|115446545|ref|NP_001047052.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|50251985|dbj|BAD27919.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|50252661|dbj|BAD28830.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113536583|dbj|BAF08966.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|215765092|dbj|BAG86789.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623006|gb|EEE57138.1| hypothetical protein OsJ_07040 [Oryza sativa Japonica Group]
          Length = 674

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++   + G   +  P +  A+LW  SG  D Y + M    
Sbjct: 297 GLVFWHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQM 356

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  D+     P +      +++  + SYR+ P    ++   +R EL     G+ R R F 
Sbjct: 357 DVEDELYQLRPMNCPYHILVYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT 416

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 417 QDDAHIFCL 425


>gi|241895222|ref|ZP_04782518.1| seryl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241871528|gb|EER75279.1| seryl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 427

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  EM  P L   +    +G+Y  +  +  R+   ++  +I  PT E  +T+ F
Sbjct: 183 DEHQKEGYKEMITPYLVKDEAMYGTGQYPKFMDDAYRVGTNDEMTLI--PTAEVPLTNYF 240

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  +     LP++   +   FR E     R   G++R  +F   +   F   PE S  + 
Sbjct: 241 REEVIDADKLPYSVTALSPAFRQEAGSAGRDTRGLIRMHQFNKVEMVKF-TKPEDSYQAL 299

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             M V+   +  +L L    +   +G +G
Sbjct: 300 EDMTVNAENLLKKLNLPYHVITLSTGDMG 328


>gi|121700783|ref|XP_001268656.1| threonyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119396799|gb|EAW07230.1| threonyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 532

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 83  YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 142

Query: 95  RLADRN-----------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 143 EVRGRGATGEADGEAGEDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEV 202

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 203 SGSLSGLTRVRRFHQDDGHIF 223


>gi|32140555|dbj|BAC78194.1| prolyl-tRNA synthetase [Raphanus sativus]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---AHDQVCRDACEKIYARLSKVGC 377
           + R +  +I +  D KG+I P  VA  ++ +I +    A+ Q   DAC    + LS+ G 
Sbjct: 8   STRTIGVMIMTHGDDKGLILPPKVASVQVVVIPVPYKDANTQGIFDACTATVSALSEAGI 67

Query: 378 DVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
               +D+ +    G +++  ++ G PL++ +G + + + +V    R  G +ED+
Sbjct: 68  RAE-EDLRDNYSPGWKYSNWEMKGVPLRIEIGPRDLENDQVRTVRRDNGAKEDI 120


>gi|70952361|ref|XP_745354.1| threonine--tRNA ligase [Plasmodium chabaudi chabaudi]
 gi|56525650|emb|CAH82048.1| threonine--tRNA ligase, putative [Plasmodium chabaudi chabaudi]
          Length = 505

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W   G    + +   +R+E       E+  P + S DLW  SG Y +Y K  + + +  +
Sbjct: 69  WFTHGANIYNKLIEFMRKEYRIRKYEEVITPNIFSCDLWKTSGHYQNY-KNCMFIFNIEN 127

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           K     P +      IF+    SY++LP       +  R+E+     G+ R R F   DA
Sbjct: 128 KEWGMKPMNCPGHCLIFKQLNASYKSLPIRLADFGVLHRNEITGSLSGLTRVRRFQQDDA 187

Query: 161 YSF 163
           + F
Sbjct: 188 HIF 190


>gi|302922168|ref|XP_003053410.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734351|gb|EEU47697.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 741

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G +  + +  +++ E  + G  E+  P +  +DLW  SG +  Y + M  
Sbjct: 337 SPGSTFFLPHGVRIYNALMDLLKGEYRKRGFTEVMSPNVYKSDLWKISGHWGHYEENMFT 396

Query: 96  LADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++   YG  P +      IF     SY++LP+      +  R+E      G+ R 
Sbjct: 397 FDVEKER---YGLKPMNCPGHCKIFAHSDVSYKDLPWRMADFGVLHRNEFSGALSGLTRV 453

Query: 153 REFLMKDAYSF 163
           R F   DA+ F
Sbjct: 454 RRFQQDDAHIF 464


>gi|32399017|emb|CAD98257.1| aminoacyl-tRNA synthetase, probable [Cryptosporidium parvum]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++       G  +S      F+   G   Y    S+G+   R +  +I +  D KG+
Sbjct: 412 GRAVQAATSHLLGQNFSKMFGVEFEDEKGNKEYAHQTSWGL-TTRAIGVMIMTHGDNKGL 470

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  VAP ++ +I I     +  +    C ++   L K G  V  DD      G ++  
Sbjct: 471 VLPPKVAPVQVIIIPIIFKTVITEEQKKICNEVECILKKAGVRVKIDDRSNYTPGWKYNH 530

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            ++ G  L+  VG + +    V +  R    + D+ + E+
Sbjct: 531 WEVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISEL 570


>gi|227827123|ref|YP_002828902.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|227458918|gb|ACP37604.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 290 FGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP---- 341
           + T Y L + +   GA+    G   +V   S+G+  + +   ++    +     WP    
Sbjct: 317 YRTDYDLTVHSKHSGANLSENGTIPHVIEPSFGLDRIAIAVLLLNYDPNPSDRNWPLFRI 376

Query: 342 -DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP +I + +I   D+   +  EK+   L  +    F      +I +Q+A AD LG 
Sbjct: 377 PYKIAPLEIGIASIHHSDEYI-NIAEKVDLILRSLDYVTFKLFERGKIDAQYAKADTLGI 435

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           PL + + SK + ++ V I++R T  +  +++ E+
Sbjct: 436 PLVITIDSKTLEENTVTIRNRDTKAQIRVNIGEI 469


>gi|52627363|gb|AAU84694.1| seryl-tRNA synthetase [Prevotella intermedia]
          Length = 289

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 115/311 (36%), Gaps = 80/311 (25%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
           Q+AL+   A   EE  ++G +E+  P L +    + +G+      +M   A  +D  +I 
Sbjct: 38  QRALE---AFFLEEARKSGYLEVQPPLLVNQASGLGTGQLPDKEGQMYH-AQADDLYLI- 92

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  +T+IFR  I   + LP         FR E     +   G+ R  +F   +   
Sbjct: 93  -PTAEVPVTNIFRDEILDEKELPIKRCAYSSCFRREAGSYGKDVRGLNRLHQFDKVEIVR 151

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            D TP+ S  S N+M      +  +L L    +R      GGD+S              F
Sbjct: 152 ID-TPQHSYQSLNEMLEHVENLLIKLELPYRILRL----CGGDMS--------------F 192

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN------KR 276
            S    DF                   E W+A      +V +   F+S   N      +R
Sbjct: 193 TSAICYDF-------------------EVWSAAQGRWLEVSSVSNFESYQANRLHCRYRR 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + IE+ H    G+  +LP                         R+VAA++E++   +
Sbjct: 234 AEDKKIELCHTLN-GSALALP-------------------------RIVAAILENNQTPE 267

Query: 337 GIIWPDSVAPF 347
           GI  P  + P+
Sbjct: 268 GIRVPKVLVPY 278


>gi|66475910|ref|XP_627771.1| proline-tRNA synthetase; class II aaRS (ybak RNA binding domain
           plus tRNA synthetase) [Cryptosporidium parvum Iowa II]
 gi|46229315|gb|EAK90164.1| proline-tRNA synthetase; class II aaRS (ybak RNA binding domain
           plus tRNA synthetase) [Cryptosporidium parvum Iowa II]
          Length = 719

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 5/160 (3%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++       G  +S      F+   G   Y    S+G+   R +  +I +  D KG+
Sbjct: 443 GRAVQAATSHLLGQNFSKMFGVEFEDEKGNKEYAHQTSWGL-TTRAIGVMIMTHGDNKGL 501

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMGEQI-GSQFAV 394
           + P  VAP ++ +I I     +  +    C ++   L K G  V  DD      G ++  
Sbjct: 502 VLPPKVAPVQVIIIPIIFKTVITEEQKKICNEVECILKKAGVRVKIDDRSNYTPGWKYNH 561

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            ++ G  L+  VG + +    V +  R    + D+ + E+
Sbjct: 562 WEVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISEL 601


>gi|50286281|ref|XP_445569.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524874|emb|CAG58480.1| unnamed protein product [Candida glabrata]
          Length = 462

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 5/145 (3%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRY 86
           R  +  Q + G   +LP G K  + + + ++ +Q    G  E+  P +    LW +SG +
Sbjct: 47  RLFITDQITPGSAFFLPNGTKIYNKLVSFMKTQQKHLFGFKEVITPLIYRKSLWEQSGHW 106

Query: 87  DSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           ++Y ++M R+   +     YG  P +      IF     SY +LP  +       R+E  
Sbjct: 107 ENYKEDMFRVEGNDLTKEEYGLKPMNCPGHCVIFNRFDHSYNDLPIRYSDFSPLHRNEAS 166

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPE 168
               G+ R R F   D + F  TP+
Sbjct: 167 GALSGLTRVRMFHQDDGHIF-CTPD 190


>gi|328958771|ref|YP_004376157.1| serine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328675095|gb|AEB31141.1| serine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 427

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 111/300 (37%), Gaps = 68/300 (22%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  EM  P L ++D    +G++  + +++ ++ +  D  +I  PT E  +T+ +R+ I  
Sbjct: 190 GYTEMMTPYLVNSDSMFGTGQFPKFKEDVFQI-EGTDLTLI--PTAEVPLTNYYRNEILK 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +   F   PE S     KM  +
Sbjct: 247 EEQLPVYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFS-KPETSYDELEKMTNN 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENTDF 239
              +  +L L   P R              ++   TG+     +K + ++  IP++ T  
Sbjct: 306 AEAVLQKLNL---PYR--------------VLALCTGDMGFSAAKTYDLEVWIPAQET-- 346

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                           Y   S   N + F +     ++  R  E G + Y  T       
Sbjct: 347 ----------------YREISSCSNTEAFQA--RRAKIRYRNEETGKLEYVHT------- 381

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-WPDSVAPFKISLINIKAHD 358
                         +   G+   R +AA++E+     G +  PD + P+   +  I+  D
Sbjct: 382 --------------LNGSGLAVGRTIAAILENYQQADGSVKIPDVLVPYMGGVTEIRKAD 427


>gi|218190922|gb|EEC73349.1| hypothetical protein OsI_07557 [Oryza sativa Indica Group]
          Length = 674

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++   + G   +  P +  A+LW  SG  D Y + M    
Sbjct: 297 GLVFWHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQM 356

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D  D+     P +      +++  + SYR+ P    ++   +R EL     G+ R R F 
Sbjct: 357 DVEDELYQLRPMNCPYHILVYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT 416

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 417 QDDAHIFCL 425


>gi|124485976|ref|YP_001030592.1| glycyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|124363517|gb|ABN07325.1| glycyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 576

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 142/378 (37%), Gaps = 82/378 (21%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   ++ YR+ LPF   Q+   +R+E+ PR G++R REF   +A  F + PE   H    
Sbjct: 175 FPRLLRFYRDHLPFGAVQVGKSYRNEISPRQGMIRLREFTQAEAEIF-VHPEEKDHPNFS 233

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPI----------GGDLSHEFIVLADTGETQVFCSKD 226
            +  Y     ++ L  I  + +  P            G +++E++         + C+  
Sbjct: 234 RYADY-----KMPLWGIAQQEKETPAVVKSMREAVDEGIIANEYVAYYVAMTHDILCTVG 288

Query: 227 FMDFPI------PSEN----TDFDDIISLN---------SIVEQWTAPYAATSDVHNEK- 266
           F    I      P E     TD  D  +L+          I ++      A S V  +K 
Sbjct: 289 FNPDKIRFRQHMPDERAHYATDCWDAEALSDRFGWVEIVGIADRTDYDLKAHSRVSGQKN 348

Query: 267 -LFDSLPENKRVSARGI-----EVGHIFYFGTK-YSLPMSATFKGADG------------ 307
            +F   PE K+V  + I     ++G  F    K  S  M      ADG            
Sbjct: 349 TVFVQYPEAKKVHHKAIVPNFGKLGPAFKGKAKPISEQMLTATPEADGIHLTIDGEEILV 408

Query: 308 -------KDHYVQM-----------GSYGIGAMRVVA---AVIESSHDGKG---IIWPDS 343
                  KD  V +            SYGI  M  +    A  E   DG+    + +   
Sbjct: 409 GPEMYTVKDEIVDVFGEDVMPHVIEPSYGIDRMCYMVLEHAYAEDVADGEARTVMRFKKG 468

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           VAP +++++ + A D +  +  + +   L   G    +DD G  IG ++   D +G P  
Sbjct: 469 VAPIQVAVLPLMARDGL-DEIAKNLVLELQNEGIQTEYDDAG-AIGRRYRRQDEIGTPYC 526

Query: 404 VIVGSKFVSDSKVEIKHR 421
           + V      D+ V ++ R
Sbjct: 527 ITVDYDTKDDASVTLRDR 544


>gi|119186087|ref|XP_001243650.1| hypothetical protein CIMG_03091 [Coccidioides immitis RS]
          Length = 560

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G    + + + +R +  + G  E+  PT+    LW +SG +  Y  +M  +  R    
Sbjct: 142 PDGAHIFNKLMSFLRAQYKQYGFEEVITPTMYKKSLWEKSGHWYIYKDDMYEVRGRGATG 201

Query: 104 MI----------YG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
                       YG  P +      +F S  +SYR+LP  F +     R+E+     G+ 
Sbjct: 202 QTVDVEIGEDEQYGLKPMNCPGHCVLFASKTRSYRSLPVRFAEFSPLHRNEISGSLSGLT 261

Query: 151 RSREFLMKDAYSF 163
           R R F   D + F
Sbjct: 262 RVRRFHQDDGHIF 274


>gi|66793366|ref|NP_001019409.1| bifunctional aminoacyl-tRNA synthetase [Rattus norvegicus]
 gi|37654316|gb|AAQ96263.1| LRRGT00050 [Rattus norvegicus]
          Length = 1486

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 67/350 (19%), Positives = 127/350 (36%), Gaps = 85/350 (24%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ +S   T 
Sbjct: 1094 PTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATF 1153

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            E +     ++   Y R++    L +IP                +V     E + F   D+
Sbjct: 1154 EEAADEVLQILELYARVYEE--LLAIP----------------VVRGRKTEKEKFAGGDY 1195

Query: 228  MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     T  +  IS                                 S R I+    
Sbjct: 1196 --------TTTLEAFIS--------------------------------ASGRAIQGATS 1215

Query: 288  FYFGTKYSLPMSATFK--GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
             + G  +S      F+     G+  +    S+G+   R +  +I    D  G++ P  VA
Sbjct: 1216 HHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGL-TTRTIGVMIMVHGDNMGLVLPPRVA 1274

Query: 346  PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI--------GSQFAVADL 397
              ++ +I     + +  +  E + A+ ++    +   D+  ++        G +F   +L
Sbjct: 1275 SVQVVVIPCGITNTLSEEDREALMAKCNEYRRRLLGADIRARVDLRDNYSPGWKFNHWEL 1334

Query: 398  LGFPLQVIVG------SKFV----------SDSKVEIKHRLTGIREDMSL 431
             G P+++ VG       +FV          + ++ E + +L G+ ED+ L
Sbjct: 1335 KGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKEAESKLKGVLEDIQL 1384


>gi|242774039|ref|XP_002478362.1| threonyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218721981|gb|EED21399.1| threonyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 532

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ +   +R +  + G  E+  P +    LW  SG + +Y  +M 
Sbjct: 94  YSPGSPLFLPNGTHIINKLIGFLRAQYRQYGFREVLTPNIYKKSLWEISGHWQNYKDDMY 153

Query: 95  RLADRNDKAMIYGPTHEEVMTD-----------IFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R       G   E+               +F+S   SYR+LP  +       R+E+
Sbjct: 154 EVRGRGATGETEGELGEDEQYGLKPMNCPGHCLLFKSQNHSYRDLPVRYADFSPLHRNEI 213

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 214 SGSLSGLTRVRRFHQDDGHIF 234


>gi|320160470|ref|YP_004173694.1| prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994323|dbj|BAJ63094.1| prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 478

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F   + +  Y    S+G+ + R + A+I +  D +G+I
Sbjct: 221 KALQSGTSHFLGQNFARAFDIRFLDQNNELQYAWTTSWGL-STRFIGAIIMTHGDDQGLI 279

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM----GEQIGSQFAVA 395
            P  +AP ++ ++ I   D   R     +  RL +   + F   +    G   G +F   
Sbjct: 280 LPPRLAPIQVVIVPIY-RDDAERSLVMPVVDRLEQELREAFRVHVDRRDGVTPGFKFNDW 338

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++ G PL++ VG K V  + V +  R
Sbjct: 339 EMRGVPLRLEVGPKDVEKNSVALARR 364



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 7/159 (4%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLRL----AD 98
           P G    +N+   + +    TG +  + P  +  + L  E    + +  E+  +     +
Sbjct: 40  PYGWALWENIQQALDKRFKATGHVNAAFPLFIPMSFLEKEKEHVEGFSPELAVVTVGGGE 99

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E ++  ++   I+SYR+LP    Q     R E+R R   +R+ EF  +
Sbjct: 100 TLEEPLVVRPTSETIIGYMYSKWIRSYRDLPILINQWGNVVRWEMRTRL-FLRTLEFYWQ 158

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           + ++   T E +     +M  +Y R       +  IP R
Sbjct: 159 EGHTAHATREEAIEETMRMLDTYYRFAIEEAAVPVIPGR 197


>gi|229584291|ref|YP_002842792.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|228019340|gb|ACP54747.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 290 FGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP---- 341
           + T Y L + +   GA+    G   +V   S+G+  + +   ++    +     WP    
Sbjct: 317 YRTDYDLTVHSKHSGANLSENGTIPHVIEPSFGLDRIAIAVLLLNYDPNPSDRNWPLFRI 376

Query: 342 -DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP +I + +I   D+   +  EK+   L  +    F      +I +Q+A AD LG 
Sbjct: 377 PYKIAPLEIGIASIHHSDEYI-NIAEKVDLILRSLDYVTFKLFERGKIDAQYAKADTLGI 435

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           PL + + SK + ++ V I++R T  +  +++ E+
Sbjct: 436 PLVITIDSKTLEENTVTIRNRDTKAQIRVNIGEI 469


>gi|238503462|ref|XP_002382964.1| glycyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|317138713|ref|XP_001817091.2| glycyl-tRNA synthetase 1 [Aspergillus oryzae RIB40]
 gi|220690435|gb|EED46784.1| glycyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 708

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ + +E  +      + +G++ +P ++AP K+ ++ +  H    R    ++
Sbjct: 556 SFGIG--RILYSTLEHVYWSREGDEARGVLSFPPAIAPTKVLIVPLSNHASF-RPLSHRL 612

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             ++ ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R +  +  
Sbjct: 613 MMKMRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDSTKQVR 672

Query: 429 MSLEEVIN 436
            S +E++ 
Sbjct: 673 ASEDEILQ 680



 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE-GSKHS 173
           +++PF    I   FR+E+ PR G++R REFLM +   + + PE G KHS
Sbjct: 290 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEGGKKHS 337


>gi|242398481|ref|YP_002993905.1| Threonyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|259516775|sp|C6A1R1|SYT_THESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|242264874|gb|ACS89556.1| Threonyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 625

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 131/327 (40%), Gaps = 54/327 (16%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SYR+LP   Y++ +  FR E R    G+ R R F M D ++     + +   + K +   
Sbjct: 311 SYRHLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTVAKNLQQAMEEFKKQYKLS 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
           + +   +GL                        +  E  +  ++DF +     EN DF  
Sbjct: 371 MEVLKGVGL----------------------TPEDYEVAIRFTEDFWN-----ENKDFIV 403

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               II    ++E W   +            D+L +   +S   I+V +   FG      
Sbjct: 404 DLAGIIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENSQRFGI----- 458

Query: 298 MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESS----HDGKGIIWPDSVAPFKISL 351
              T+   +G++ Y + +     GA+ RV+ A++E        GK  ++P  ++P ++ +
Sbjct: 459 ---TYYDEEGQEKYPLLLHCSPSGAIERVMYAILEKQAKIMKKGKKPMYPLWLSPIQVRI 515

Query: 352 INIKAHDQVCRDACEKIYARL--SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           I +    +   D    I  +L  +K+  DV  DD  E++  +   A+    P  ++VG  
Sbjct: 516 IPV---SEKYLDYALYIAGKLEGAKIRADV--DDRNERLNKKIREAEKEWIPYIIVVGEN 570

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVIN 436
                 + ++ R    + ++ +E++I 
Sbjct: 571 EKRMGVITVRKREDNKQYEIQVEDLIK 597


>gi|188996057|ref|YP_001930308.1| threonyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229558457|sp|B2V6M2|SYT_SULSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188931124|gb|ACD65754.1| threonyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 643

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +    ++E  + G   +  P +    LW  SG    Y + M    
Sbjct: 266 GLAIWLPKGAIIRKEIEDAWKKEHLKRGYQLVYTPHVGKEQLWQTSGHLSFYQENMYPRM 325

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++     P +     +I++S  +SY+  P    ++   +R E      G+MR R F 
Sbjct: 326 QIEEEGYYVKPMNCPFHVEIYKSKQRSYKEFPIRLAELGTVYRYERSGALHGLMRVRGFT 385

Query: 157 MKDAY 161
             DA+
Sbjct: 386 QDDAH 390


>gi|326512486|dbj|BAJ99598.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 554

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 7/157 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL 96
           G Y   P      +++   +  E  ++G      P L S   L +E    + +  E+  +
Sbjct: 86  GCYVLRPWAYSIWESIQGFLDGEFKKSGVSNAYFPLLVSKRQLELEKAHVEGFAPEVAWV 145

Query: 97  ADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D    + +   PT E +M   +   I+S+R++P    Q     R E +     +R+
Sbjct: 146 TRSGDSELAEPVAIRPTSETIMYPCYAKWIRSHRDMPLRLNQWCNVIRWEFKHPVPFLRT 205

Query: 153 REFLMKDAYS-FDLTPEGSKHSYNKMFVSYLRIFHRL 188
           REFL ++ +S F   PE        + + Y R +  L
Sbjct: 206 REFLWQEGHSAFATRPEAEAEVLEILEI-YKRAYEEL 241



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 8/162 (4%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RGI+       G  +S      F+G DG        S+G    R +  +I    D K
Sbjct: 272 ATGRGIQACTSHCLGQNFSKMFGIEFEGVDGTKQLAWQNSWGF-TTRSIGVLIMVHGDNK 330

Query: 337 GIIWPDSVAPFKISLINIKAHD------QVCRDACEKIYARLSKVGCDVFWDDMGEQI-G 389
           G++ P  VAP ++ ++ I           + + A   I   L K       D       G
Sbjct: 331 GLVLPPRVAPTQVVVVPIPYSKGSGDDGALAKRAQTDIVDVLRKANVRTQLDARANYTPG 390

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            ++   +  G P+ +  G K   +++     R TG +E ++L
Sbjct: 391 WKYNHWEAKGVPVTIQFGPKDNDNAQCVAVRRDTGAKETIAL 432


>gi|303235731|ref|ZP_07322338.1| serine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302484178|gb|EFL47166.1| serine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 116/311 (37%), Gaps = 80/311 (25%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
           Q+AL+   A   EE  ++G +E+  P L +    + +G+      +M  +   +D  +I 
Sbjct: 178 QRALE---AFFLEEARKSGYLEVQPPLLVNQASGLGTGQLPDKEGQMYHV-QADDLYLI- 232

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  +T+IFR  I   + LP         FR E     +   G+ R  +F   +   
Sbjct: 233 -PTAEVPVTNIFRDEILDEKELPIKRCAYSSCFRREAGSYGKDVRGLNRLHQFDKVEIVR 291

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            D TP+ S  S N+M      +  +L L    +R      GGD+S              F
Sbjct: 292 ID-TPQHSYESLNEMLEHVESLLQKLELPYHILRL----CGGDMS--------------F 332

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN------KR 276
            S    DF +                   W+A      +V +   F+S   N      ++
Sbjct: 333 TSAICYDFEV-------------------WSAAQKRWLEVSSVSNFESYQANRLHCRYRK 373

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + IE+ H    G+  +LP                         R+VAA+IE++   +
Sbjct: 374 AEDKKIELCHTLN-GSALALP-------------------------RIVAAIIENNQTPE 407

Query: 337 GIIWPDSVAPF 347
           GI  P ++ P+
Sbjct: 408 GIRVPKALVPY 418


>gi|168027962|ref|XP_001766498.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682407|gb|EDQ68826.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 615

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 73/393 (18%), Positives = 140/393 (35%), Gaps = 46/393 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++     G   +  P +   DLW  SG YD Y + M    
Sbjct: 239 GLVFWHPKGAMIRHIIEDYWKKMHFANGYELLYTPHIAKLDLWKTSGHYDFYKENMFDQM 298

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++     P +      +++  ++SYR LP    ++   +R E      G+ R R F 
Sbjct: 299 QIEEELYQIRPMNCPFHIQVYKDALRSYRELPMRVAELGTVYRYERSGTLHGLFRVRGFT 358

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D + F L P+  +     +      I  + G     +   + P     S E    A T
Sbjct: 359 QDDGHIFCL-PDQIRDEIRGVLDLTEMILKQFGFSKFEINLSTRPEKAVGSDEIWEKATT 417

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                   K + ++ I      F                Y    DV   K+ D++    +
Sbjct: 418 ALKSALEDKGW-EYGIDEGGGAF----------------YGPKIDV---KIEDAIGRKWQ 457

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRVVAAVIESSH 333
            S   ++          ++LP        D    +   + +     G++     ++  ++
Sbjct: 458 CSTIQVD----------FNLPERFNMVYVDSDTSRKQPIMIHRAIFGSIERFFGILTENY 507

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--KVGCDVFWDDMGEQIGSQ 391
            G   +W   +AP +  L+ +  ++    D C+K+ A L   ++  +V +   GE++G  
Sbjct: 508 AGDFPLW---LAPVQARLLPVTDNEV---DYCKKVVAELKAREIRAEVIF---GERLGKL 558

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              A+    P+  +VG K V    + ++ R  G
Sbjct: 559 IRNAETQKIPVMAVVGRKEVETETLTVRTRHGG 591


>gi|168057512|ref|XP_001780758.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667776|gb|EDQ54397.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 536

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   ++SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 155 EERLVVRPTSETIVNHMFAQWVQSYRDLPLLINQWANVHRWEMRTR-PFVRTLEFLWQEG 213

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   +PE ++    +M   Y
Sbjct: 214 HTAHTSPEEAEEEALRMIEVY 234


>gi|260584327|ref|ZP_05852074.1| serine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260157845|gb|EEW92914.1| serine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 426

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 127/338 (37%), Gaps = 80/338 (23%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + IY+++             I     + G  EM  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAIYNYM-------------IDLHVEKHGYTEMITPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +      +G++  + +++ ++ D  +  +I  PT E  +T+ + + I     LP  F  +
Sbjct: 201 NEQSMYGTGQFPKFKEDVFQINDERNLTLI--PTAEVPLTNYYANEILEEAQLPIYFTAL 258

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F  TPE S     KM  +   +   LGL 
Sbjct: 259 SPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKF-ATPETSFEELEKMTDNAEDVLRGLGL- 316

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVE 250
             P R              IVL  TG+     SK + ++  IP+++T + +I S ++ V 
Sbjct: 317 --PFRT-------------IVLC-TGDMGFSASKTYDVEVWIPAQDT-YREISSCSNCV- 358

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                             D      ++  R  E G I    T                  
Sbjct: 359 ------------------DFQARRAKIRYRQAETGKIELLHT------------------ 382

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
              +   G+   R VAA++E+  +  G +  P+ + P+
Sbjct: 383 ---LNGSGLAVGRTVAAILENYQEADGSVTIPEVLVPY 417


>gi|226227159|ref|YP_002761265.1| prolyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226090350|dbj|BAH38795.1| prolyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 489

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   ++SYR+LP  + Q     R E+R R   +R+ EFL ++ 
Sbjct: 103 EERLVVRPTSETIIYSMFAKWVQSYRDLPLLYNQWANVVRWEMRTRL-FLRTMEFLWQEG 161

Query: 161 YSFDLTPEGSKHSYNKMFVSY 181
           ++   T + ++    +M   Y
Sbjct: 162 HTAHATHDEAEEETRRMLGVY 182


>gi|168702447|ref|ZP_02734724.1| threonyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 620

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 13/168 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G    LP G      +   I + + R G + +  P +   +L+  SG +D Y   M    
Sbjct: 228 GFPMLLPKGATIRRLLETFITDYERRAGYLHVFTPDIAKKELYKISGHWDHYKDSMFPPM 287

Query: 98  D-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-- 150
           D      +D+ +   P        +++S  +SYR+LP    ++   +R E   R GV+  
Sbjct: 288 DMGEGGNDDEELCLRPMCCPHHIQVYKSKARSYRDLPIRIAELGNMYRFE---RSGVVGG 344

Query: 151 --RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R R   + DA+ F + P+  KH    +     + +  LG+     R
Sbjct: 345 LSRVRCMTLNDAHLF-VRPDQVKHEIAGVLQLMKKAYADLGITEYRFR 391


>gi|223943839|gb|ACN26003.1| unknown [Zea mays]
          Length = 419

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 38  EEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTK-PFIRTLEFLWQEG 96

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           ++   T E ++    +M   Y +  F    +  IP R
Sbjct: 97  HTAHATLEEAEKEAMQMIDVYTKFAFEHAAIPVIPGR 133


>gi|192359600|ref|YP_001983012.1| seryl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|238692464|sp|B3PL38|SYS_CELJU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|190685765|gb|ACE83443.1| seryl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 428

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N+ G  E+++P + + D    +G+   + +++ +L D  D+     PT E  +T+I+R  
Sbjct: 186 NQHGYEEVNIPFIVNRDSLFGTGQLPKFEEDLFKLTD--DREFYLIPTAEVPLTNIYRDA 243

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP  F      FR E     R   G++R  +F  K    + + PE S  +   +
Sbjct: 244 ILEDNQLPIKFVAHSPCFRSEAGSYGRDTRGMIRQHQF-EKVELVWLVQPEKSDEALEAL 302

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG 203
                +I H L L    +    G IG
Sbjct: 303 VAHAEKILHDLELPHRTVVLCGGDIG 328


>gi|119716597|ref|YP_923562.1| threonyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|166225470|sp|A1SJ90|SYT_NOCSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119537258|gb|ABL81875.1| Ser-tRNA(Thr) hydrolase [Nocardioides sp. JS614]
          Length = 668

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 141/390 (36%), Gaps = 49/390 (12%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           +R+     G   +  P +    L+  SG    YG+ M    D +         +  +   
Sbjct: 304 VRQRHVEEGFEYVGTPHIAKEGLFYTSGHLPYYGEAMFPPLDVDGMDYRLKAMNCPMHNL 363

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP   ++    +R E      G+ R R F   D++S+ +T E +     
Sbjct: 364 IFRSRQRSYRELPLRLFEFGHVYRHEKSGVIHGLTRVRGFAQDDSHSY-VTKEQAPAEIK 422

Query: 176 KMFVSYLRIFHRLGLK----SIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFM 228
            +    L +F   GL      +  R +S P   IG D            E     +K   
Sbjct: 423 HLLDFCLGLFRDFGLDDFYLELSTRDDSKPDKFIGSD------------EDWAVATKVLE 470

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D  I S          L  + +   A Y                + +    R  ++  I 
Sbjct: 471 DVCIAS---------GLELVPDPGGAAYYGPK---------VSVQARDAIGRTWQMSTIQ 512

Query: 289 Y-FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           Y F    +      +  ADG +   V + S   G++     V+   + G    +P  +AP
Sbjct: 513 YDFNQPSADRFDLHYTAADGSRQQPVMIHSAKFGSIERFIGVLVEHYAGA---FPPWLAP 569

Query: 347 FKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
            ++  I I + H+    D  +++ A+    G  V  DD  +++  +   A LL  P  +I
Sbjct: 570 VQVQAIPIAERHNDYLYDVAKRMQAQ----GLRVEVDDSDDRMQKKIRNAQLLKVPFMMI 625

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            G   V+   V  ++R       + L+E I
Sbjct: 626 AGDDDVAAGAVSFRYRDGRQDNGVPLDEAI 655


>gi|147776717|emb|CAN76962.1| hypothetical protein VITISV_029502 [Vitis vinifera]
          Length = 599

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R +   
Sbjct: 162 GKEL-------EEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTK-PF 213

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R+ EFL ++ ++   TPE ++    +M   Y +
Sbjct: 214 VRTLEFLWQEGHTAHATPEEAEKEALQMIDVYTK 247


>gi|115438430|ref|XP_001218064.1| glycyl-tRNA synthetase 1 [Aspergillus terreus NIH2624]
 gi|114188879|gb|EAU30579.1| glycyl-tRNA synthetase 1 [Aspergillus terreus NIH2624]
          Length = 656

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +++PF    I   FR+E+ PR G++R REFLM +   F     G KHS
Sbjct: 238 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHFVDPESGKKHS 285



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R+  ++IE  +      + +G++ +P  +AP K+ ++ +  H    +   +++
Sbjct: 504 SFGIG--RIFYSLIEHVYWSREGDEARGVLSFPPVIAPTKVLIVPLSTHASF-KPLSQRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R +  +  
Sbjct: 561 MMKLRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDSTKQVR 620

Query: 429 MSLEEVIN 436
            S +E++ 
Sbjct: 621 ASEDEIVQ 628


>gi|297818950|ref|XP_002877358.1| hypothetical protein ARALYDRAFT_323159 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323196|gb|EFH53617.1| hypothetical protein ARALYDRAFT_323159 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 673

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           R LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 268 RKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPENKSH 313


>gi|301061986|ref|ZP_07202704.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300443910|gb|EFK07957.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 483

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 2/125 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +      E  + G      P +   DLW +SG + +Y +E +   
Sbjct: 264 GMVVWHPNGAMLRHLLEEFEIAEHLKRGYALARGPEVLKTDLWKKSGHFANY-RENMYFT 322

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + + ++    P +      I+ S I+SYR+LP  ++++    R E      G+ R REF 
Sbjct: 323 EIDGQSYGMKPMNCLSHMLIYGSKIRSYRDLPRRYFELGTVHRHERSGVLHGLFRVREFT 382

Query: 157 MKDAY 161
             DA+
Sbjct: 383 QDDAH 387


>gi|227496236|ref|ZP_03926533.1| threonine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834224|gb|EEH66607.1| threonine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 679

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 89/439 (20%), Positives = 157/439 (35%), Gaps = 75/439 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--R 95
           G+  + P G      +   + E   R G   +  P +  A L+  SG    Y   M    
Sbjct: 276 GLVVFHPKGGMLRHEIEKYVIERHERAGFDFVHTPEITKAGLFHTSGHLPYYADTMFPPM 335

Query: 96  LADRNDKA--------------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           LAD    A               +  P H      IFRS  +SYR LP   +++   +R 
Sbjct: 336 LADEETDAEGNVTKAGQEYYLKAMNCPMH----NLIFRSRGRSYRELPLRLFEMGHDYRY 391

Query: 142 ELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK----SIPMR 196
           E      G+ R R F   D++++  T E +     K    ++ I    GL      +  R
Sbjct: 392 EKSGVVHGLTRMRGFTQDDSHTY-CTREQAPEEIKKQIEFFISILKAFGLTDFYLELSTR 450

Query: 197 AESGP-----IGGDLSHEFIVLADTGETQVFCSKDFMDF-PIPSENTDFDDIISLNSIVE 250
            E G      IG D   E    A T      C+   +D  P P     +   +S+     
Sbjct: 451 DEDGAKKDKFIGSDEDWE----AATRTLSQVCASTGLDLVPDPGGAAFYGPKVSV----- 501

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                          ++ D++    ++S     + + F    ++ L  +A    ADG   
Sbjct: 502 ---------------QVKDAIGRTWQMST----IQYDFNQPERFDLEYTA----ADGSHQ 538

Query: 311 Y-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + + S  +G++     V+   + G    W   +AP ++ LI +    +   D   ++ 
Sbjct: 539 RPIMLHSAKLGSVERFIGVLTEHYAGAFPAW---LAPVQVRLIPVA---EAFDDYVTQVA 592

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGI 425
           ARL + G  V  D   ++ G +   A     P  +I G +      V  + R      G+
Sbjct: 593 ARLRERGVRVETDLSDDRFGKKIRNASKEKVPFTLIAGGEDAEAGAVSFRFRDGEQTNGV 652

Query: 426 REDMSLEEVINYASHRFSN 444
             D ++E + +  + + ++
Sbjct: 653 PVDEAIEHIADVIARKVND 671


>gi|289580635|ref|YP_003479101.1| threonyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289530188|gb|ADD04539.1| threonyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 650

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 9/167 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+  L  +   + +     G   +  P +   DLW  SG Y++Y  +M  + 
Sbjct: 271 GLPLYHPPGKTVLKELEDFVEDLNKDAGYDYVETPHVFKTDLWHRSGHYENYQDDMF-IF 329

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +  D      P +      IF+    SYR+LP  + +    +R E R    G+ R   F 
Sbjct: 330 NVGDDEFGLKPMNCPGHAAIFQDQSWSYRDLPIRYAENGKVYRKEQRGELSGLSRVWAFT 389

Query: 157 MKDAYSFDLTPEGSKHSYNK---MFVSYLRIF---HRLGLKSIPMRA 197
           + D + F + P+  +    +   M +  L  F   + + L + P ++
Sbjct: 390 IDDGHLF-IRPDQIEQEVEEIMDMIIDVLETFDLEYEMALATRPEKS 435


>gi|322707106|gb|EFY98685.1| glycyl-tRNA synthetase 1 [Metarhizium anisopliae ARSEF 23]
          Length = 662

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 258 ATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           ATS    EKL   L ++ ++S    G+  G +        +      +        V   
Sbjct: 443 ATSQEEREKLAKQLKDSGKISLDVAGVGDGKVEVGSDTLKIEFRKRIENTREFTPNVIEP 502

Query: 316 SYGIGAMRVVAAVIE---------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDAC 365
           S+GIG  R++ ++IE            + +G++ +P +VAP K+ ++ +  + Q  R   
Sbjct: 503 SFGIG--RILYSLIEHNFWTRGSDGGDEARGVLSFPPTVAPTKVLIVPLSNNVQF-RPII 559

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +K+  +L   G     DD    IG +++  D LG PL + V  + + D  + ++ R
Sbjct: 560 KKLSQQLRLAGISSRIDDSSASIGKRYSRNDELGTPLGITVDFQTLQDDTITLRDR 615



 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK--HSYNKMFVSYLRI 184
            +PF    I   +R+E+ PR G++R REFLM +   F + P G K  H ++++    L +
Sbjct: 238 QMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHF-VDPHGGKKHHRFHEVEDVVLLL 296

Query: 185 FHR 187
             R
Sbjct: 297 LDR 299


>gi|302143811|emb|CBI22672.3| unnamed protein product [Vitis vinifera]
          Length = 448

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 67  EEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTK-PFVRTLEFLWQEG 125

Query: 161 YSFDLTPEGSKHSYNKMFVSYLR 183
           ++   TPE ++    +M   Y +
Sbjct: 126 HTAHATPEEAEKEALQMIDVYTK 148


>gi|213389878|gb|ACJ46005.1| threonyl tRNA synthetase [Palm lethal yellowing phytoplasma]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WLP G      +   I  ++       +  P L + +L+  SG    Y + M  + 
Sbjct: 260 GFPLWLPKGATIRRIIERYIVNKELEYDYQHVYTPVLANIELYQTSGHLKLYKENMFPIM 319

Query: 98  D-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
             +ND+ ++  P +      IF+  ++SY++LPF   ++ +  R E      G+ R+R  
Sbjct: 320 KLQNDEKIVLRPMNCPHHMMIFKKKLRSYKDLPFKIAELGMMHRYEHSGAVSGLQRTRAM 379

Query: 156 LMKDAYSF 163
            + DA+ F
Sbjct: 380 TLNDAHIF 387


>gi|281208581|gb|EFA82757.1| glycyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 643

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDH--YVQMGSYGIGAMRVVAAVIESSH-----D 334
           I V    Y  TK  + ++ T K   G+ +  +V   S+G+G  R++ ++IE ++     D
Sbjct: 458 INVNTNQYTITKEMVTLTKTQKKISGESYQPHVIEPSFGLG--RIIYSLIEHAYWVREGD 515

Query: 335 GKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +  +   P  +AP K S++ +  + ++      +I   L + G     DD G  IG ++
Sbjct: 516 EQRCVLSLPAIIAPVKASILPLIGNAELA-PFVHRINRLLKEAGISCKVDDSGSAIGRRY 574

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           A  D +G P  + +    + D  V ++ R T  +  + + +V         NN
Sbjct: 575 ARTDEIGIPFGITIDFDTLKDDTVTLRERDTTKQVRIPISDVTQTLKQLCENN 627


>gi|18977999|ref|NP_579356.1| glycyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|32171572|sp|Q8U0G2|SYG_PYRFU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|18893778|gb|AAL81751.1| glycyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 568

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 21/197 (10%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           K+ + +  IIRE   R       +     +D+W  +  +++Y         ++ KA +  
Sbjct: 113 KSAEEMTKIIREHNIRCPECGGEL-----SDVWYFNLMFETYIGPY-----KDKKAYLRP 162

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   +   F   P
Sbjct: 163 ETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMIRLREFTQAEVEIF-FNP 221

Query: 168 EGSKHS-YNKMFVSYLRIF---HRLG-LKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             ++H  ++++    LR++   H+L  L  I + AE     G + + F          V 
Sbjct: 222 NETEHPHFDEVKDEVLRLYPIEHQLKDLGMIELTAEEAVKKGYVMNTFFAY-----YMVM 276

Query: 223 CSKDFMDFPIPSENTDF 239
             +  +D  IP +   F
Sbjct: 277 IKRILLDIGIPEDKIRF 293


>gi|147835150|emb|CAN65675.1| hypothetical protein VITISV_002010 [Vitis vinifera]
          Length = 342

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++     G   +  P +  ADLW  SG  D Y + M    
Sbjct: 116 GLVFWHPKGAIVRHIIEDSWKKIHIEHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQI 175

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              D+     P +      I++  + SYR+ P    ++   +R EL     G+ R R F 
Sbjct: 176 TIEDELYQLRPMNCPYHILIYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT 235

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 236 QDDAHIFCL 244


>gi|145246120|ref|XP_001395309.1| glycyl-tRNA synthetase 1 [Aspergillus niger CBS 513.88]
 gi|134080022|emb|CAK41069.1| unnamed protein product [Aspergillus niger]
          Length = 667

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+G G  R+  +++E      ++   +G++  P SVAP K+ ++ +  H        ++I
Sbjct: 514 SFGFG--RIFYSLLEHVYWHRANDPARGVLSLPISVAPTKVLIVPLSTHQDFV-PITKRI 570

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L ++G     D+    IG ++A  D LG PL + +    V D  + ++ R +  +  
Sbjct: 571 TEDLRELGISCRADESSASIGKRYARNDELGIPLGITIDFDSVKDGTITLRERDSTKQVR 630

Query: 429 MSLEEVI 435
            S EE++
Sbjct: 631 ASKEEIL 637



 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           ++PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 250 SMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 293


>gi|75676225|ref|YP_318646.1| threonyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|74421095|gb|ABA05294.1| Ser-tRNA(Thr) hydrolase [Nitrobacter winogradskyi Nb-255]
          Length = 686

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG ++ Y + M       D+A         P +      +F+  +
Sbjct: 315 EVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKHGL 374

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 375 KSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF 416


>gi|254819890|ref|ZP_05224891.1| threonyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEM---LRL-ADRNDKAMIYGPTHEEVM--------TD 116
           ++ P +  ADL+  SG  D Y + M   + L A+ +D   +  P  +  +        T 
Sbjct: 319 VNTPHITKADLFHTSGHLDWYAEGMYPPMHLDAEYDDDGTVRKPGQDYYLKPMNCPMHTL 378

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           IFRS  +SYR LP   ++    +R E      G+ R+R F M DA+ F
Sbjct: 379 IFRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDAHIF 426


>gi|318079886|ref|ZP_07987218.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP G      +   +R  +   G   +  P L   +L+V SG +  Y  +M    
Sbjct: 31  GLPYLLPDGASVRHALEEYVRGLEVADGYQHVHSPVLGKQELYVRSGHWAHYRADMFPPM 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +  +  P+       I+R+  +SYR LP    ++   FR E      G+ R R   
Sbjct: 91  EVGGEHFVLRPSLCPHHALIYRAQARSYRELPLRIAELGGMFRAEPSGTLGGLTRVRAIH 150

Query: 157 MKDAYSFDLTPE 168
           + DA+ F   PE
Sbjct: 151 LNDAHLF-CAPE 161


>gi|225464551|ref|XP_002272741.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 547

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R +   
Sbjct: 162 GKEL-------EEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTK-PF 213

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R+ EFL ++ ++   TPE ++    +M   Y +
Sbjct: 214 VRTLEFLWQEGHTAHATPEEAEKEALQMIDVYTK 247


>gi|209876788|ref|XP_002139836.1| glycyl-tRNA synthetase  [Cryptosporidium muris RN66]
 gi|209555442|gb|EEA05487.1| glycyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 662

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI L FR+E+ PR G++R REF M +   F + PE   H
Sbjct: 219 KKLPFAAAQIGLGFRNEIAPRNGLLRVREFQMAEIEHF-VHPERKNH 264


>gi|291295577|ref|YP_003506975.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290470536|gb|ADD27955.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   + +++   G   +  P + +A L+  SG    Y  +M  
Sbjct: 270 GKGLPLWLPRGAFIRRQMEDYMYQKEQEHGYHYVYTPHIANARLYYTSGHLPYYKDDMYA 329

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             +   +     P +      I+++  KSYR+LP    +    +R EL     G+ R+R 
Sbjct: 330 PIEIEGEEYYLKPMNCPHHHMIYKARPKSYRDLPLRLAEFGTVYRFELSGTLSGLTRARG 389

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           F   DA+ +      S+    + F+  +++F
Sbjct: 390 FTQNDAHIY-----CSRAQVTEEFIRVIQLF 415


>gi|154309169|ref|XP_001553919.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|150852522|gb|EDN27714.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 588

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 68  EMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHI 122
           E S P  L S  L  E    + +  E+  +    DK     +   PT E VM   +   I
Sbjct: 116 EASFPMFLSSKSLEKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWI 175

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +S+R+LP    Q     R E +     +R+REFL ++ ++  LT   +     ++   Y 
Sbjct: 176 RSHRDLPLRLNQWNSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEALAGEEVLQILEFYA 235

Query: 183 RIFHRL 188
            ++  L
Sbjct: 236 GVYEEL 241


>gi|255081150|ref|XP_002507797.1| bifunctional aminoacyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226523073|gb|ACO69055.1| bifunctional aminoacyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 588

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLRL 96
           G Y   P      + +     +E  + G      P  + SA L  E    + +  E+  +
Sbjct: 131 GCYILRPWAYSMWEQIKDFFDKEIKKEGVENCYFPLFVSSARLEAEKDHIEDFAPEVAWV 190

Query: 97  ADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   D  +   PT E VM  +F + I+S+R+LP    Q     R E +     +RS
Sbjct: 191 TRSGQSELDVPIAVRPTSETVMYPVFANWIRSHRDLPMKLNQWCNVVRWEFKHPTPFIRS 250

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIP-MRAESGPIGGDL 206
           REFL ++ ++       +      +   Y R++   L +  IP +++E     G L
Sbjct: 251 REFLWQEGHTAFTNKADADKEVRHILDLYRRVYEELLAVPVIPGVKSEKEKFAGGL 306


>gi|320164647|gb|EFW41546.1| glutamyl-prolyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 1526

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS-FDLT 166
            PT E +M   F   I+S+R+LP    Q     R E +     +R+REFL ++ ++ ++  
Sbjct: 1135 PTSETIMYPSFAKWIRSHRDLPLKINQWANVVRWEFKNPTPFLRTREFLWQEGHTAYETK 1194

Query: 167  PEGSKHS------YNKMFVSYLRIFHRLGLKS 192
            PE  K        Y +++  YL +    G KS
Sbjct: 1195 PEADKEVLQILELYRRVYEEYLAVPVIKGKKS 1226


>gi|226494879|ref|NP_001149927.1| prolyl-tRNA synthetase [Zea mays]
 gi|195635525|gb|ACG37231.1| prolyl-tRNA synthetase [Zea mays]
          Length = 537

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 156 EEXLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTK-PFIRTLEFLWQEG 214

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           ++   T E ++    +M   Y +  F    +  IP R
Sbjct: 215 HTAHATLEEAEKEAMQMIDVYTKFAFEHAAIPVIPGR 251


>gi|302121711|gb|ADK92877.1| threonyl-tRNA synthetase [Hypericum perforatum]
          Length = 721

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++     G   +  P +  ADLW  SG  D Y + M    
Sbjct: 345 GLVFWHPKGAIVRHIIEDAWKKMHIANGYELLYTPHVAKADLWKISGHLDFYRENMFEQM 404

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              D+     P +      I++    SYR+ P    ++   +R EL     G+ R R F 
Sbjct: 405 KIEDEQYQLRPMNCPYHILIYKRKQNSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT 464

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 465 QDDAHIFCL 473


>gi|110004597|emb|CAK98934.1| probable threonyl-trna synthetase 1 protein [Spiroplasma citri]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G      +   IRE++      E+  P + +++++  SG +D Y + M    
Sbjct: 258 GLPIWLPNGMALKKVLQEYIREKEWEYDFTEVDTPVIGTSEMYKISGHWDHYQENMFAPM 317

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
            +N++  +  P        ++    +SYR LP    +  +  R E      G+ R R   
Sbjct: 318 AQNNEISVLRPMACPHHIAVYNYKQRSYRELPLRIAEHAILHRYETSGSLTGLERVRMMQ 377

Query: 157 MKDAYSFDLTPEGSKHSYNKMF 178
           + D++ F L  +  K  + + F
Sbjct: 378 LTDSHIF-LRHDQLKEEFKRCF 398


>gi|67517326|ref|XP_658540.1| hypothetical protein AN0936.2 [Aspergillus nidulans FGSC A4]
 gi|40746809|gb|EAA65965.1| hypothetical protein AN0936.2 [Aspergillus nidulans FGSC A4]
 gi|259488776|tpe|CBF88493.1| TPA: threonyl-tRNA synthetase (AFU_orthologue; AFUA_1G16210)
           [Aspergillus nidulans FGSC A4]
          Length = 523

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 75  YSPGSPLFLPNGTHIINKLISFLRTQYLQYGFREVLTPTIYKQSLWEVSGHWQNYKDDMY 134

Query: 95  RLADRNDKAMIYG-----------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R       G           P +      +F+S   SYR LP  +       R+E+
Sbjct: 135 EVRGRGAMGDTEGEAGENESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEI 194

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 195 SGSLSGLTRVRRFHQDDGHIF 215


>gi|37359720|dbj|BAC97834.1| glutamyl-prolyl-tRNA synthetase [Oryzias latipes]
          Length = 587

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 116/339 (34%), Gaps = 73/339 (21%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 195 PTSETVMYPAYAKWVQSHRDLPIKLNQWCNIVRWEFKHPQPFLRTREFLWQEGHTAFATK 254

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E +     ++   Y RI+    L +IP                +V     E + F   D+
Sbjct: 255 EEATEEVMQILDLYARIYEE--LLAIP----------------VVKGRKTEKEKFAGGDY 296

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                    T  +  IS                                 S R I+    
Sbjct: 297 --------TTTVEAFIS--------------------------------ASGRAIQGATS 316

Query: 288 FYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            + G  +S      F+     G+       S+GI   R +  +     D  G++ P  VA
Sbjct: 317 HHLGQNFSKMFEIVFEDPKRPGEKQLAFQNSWGI-TTRTIGVLTMVHGDNMGLVLPPRVA 375

Query: 346 PFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDV---FWDDMGEQIGSQFAVA 395
             ++ +I         +   +     C K   RL   G  V   F D+     G +F   
Sbjct: 376 CVQVVIIPCGITASLPEQEKEALLAQCSKYLKRLLDAGVRVKSDFRDNYSP--GWKFNHW 433

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +L G P+++ VG K +   +     R +G +  +   EV
Sbjct: 434 ELKGVPVRLEVGPKDMQQKQCVAVRRDSGAKITLPEGEV 472


>gi|189219987|ref|YP_001940627.1| Threonyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189186845|gb|ACD84030.1| Threonyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 611

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG 337
           +G  +  GT    Y+LP   S ++ G DG+ H  V +     G++    A++   ++G  
Sbjct: 448 IGRSWQLGTVQLDYNLPARFSLSYVGEDGQLHAPVIIHRAPFGSLERFLAILIEHYEGHF 507

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            +W   +AP ++ +I +   D +     EKI   L +    V  D   + +G++  VA L
Sbjct: 508 PLW---LAPEQVRVIPVS--DGLIAYG-EKIKEILQQNRFRVSLDRKNDTLGAKIRVAQL 561

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              P  +IVG K    S+V ++    G   +MSL+  I+  +  +   R
Sbjct: 562 QKVPYMLIVGKKEEQMSRVSVRTSKKGNIGEMSLDTFISLITAEYKERR 610



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 25/151 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--- 94
           G+  WLP G      +   + EE  + G   +  P + S DL+  SG Y  Y +      
Sbjct: 208 GLPLWLPKGAVIRRELQNFLTEELLQRGYQLVYTPHIGSLDLFRTSGHYPYYRESQFPPI 267

Query: 95  -----------------RLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFY 133
                             LA+R +K  + G    P +  +   IF S  +SYR+LP    
Sbjct: 268 LDPDELKAFEDKTGSCAELANRLEKGEVGGYLLKPMNCPMHIRIFDSKPRSYRDLPVRIA 327

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +    +R E      G+ R R F   DA+ F
Sbjct: 328 EFGTVYRFEKSGELSGLTRVRGFTQDDAHIF 358


>gi|147835152|emb|CAN65677.1| hypothetical protein VITISV_002012 [Vitis vinifera]
          Length = 435

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++     G   +  P +  ADLW  SG  D Y + M    
Sbjct: 117 GLVFWHPKGAIVRHIIEDSWKKIHIEHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQI 176

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              D+     P +      I++  + SYR+ P    ++   +R EL     G+ R R F 
Sbjct: 177 TIEDELYQLRPMNCPYHILIYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT 236

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 237 QDDAHIFCL 245


>gi|311742315|ref|ZP_07716124.1| threonine--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313943|gb|EFQ83851.1| threonine--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 661

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 2/154 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G      +   +R      G   +  P +    L+  SG    YG+ M    
Sbjct: 279 GLPVFHPRGGVIKREMEDYVRRRHIEEGFEYVGTPHIAKEGLFHTSGHLPYYGEGMFPAL 338

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           D +         +  +   IFRS  +SYR LP  F++    +R+E      G+ R R F 
Sbjct: 339 DVDGSDYRLKAMNCPMHNLIFRSRGRSYRELPLRFFEFGHVYRNEKSGVIHGLTRVRGFA 398

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             D++S+ +TPE +      +    L +    GL
Sbjct: 399 QDDSHSY-VTPEQAPGEIRHLLQFVLSLLRDFGL 431


>gi|303277857|ref|XP_003058222.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460879|gb|EEH58173.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 683

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-YNKMFVSYLRIF 185
            LPF   Q+   FR+E+ PR G++R REF   +   F + PE  +H+ +N++    L +F
Sbjct: 271 KLPFAAAQVGQSFRNEIAPRAGLLRVREFTQAEIEHF-VHPEKKEHARFNEVADVELNLF 329

Query: 186 HR 187
            R
Sbjct: 330 SR 331



 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESS-----HDGKGIIWPDS--VAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++  + E S      D +  ++  S  +AP K+++  +  +D       EK+
Sbjct: 532 SFGIG--RIMYCMFEHSFYVRGDDEQKTVFKFSPLIAPIKLAIFPL-VNDSGMNAHAEKL 588

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              LS  G     D     +G ++A  D LG P  V V  + + D  V ++ R
Sbjct: 589 SRELSSEGVSTKLDTTATTVGKRYARNDELGIPFAVTVDHRTLQDGTVTVRER 641


>gi|323341530|ref|ZP_08081769.1| serine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323091051|gb|EFZ33684.1| serine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 24/203 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y+++      LD        E  + G  EM  P + 
Sbjct: 154 RGAKVSGARFVYYKGLGARLERAVYNFM------LD--------EHAKEGYTEMLPPYIV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +A     +G++  + +++ ++   N + M   PT E  +T+ +R  +     LP  F  +
Sbjct: 200 NAQTMYGTGQFPKFKEDVYQV---NGEDMTLIPTAEVPLTNYYRDEVIPTEKLPVYFTAL 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S     KM  +   I  +LGL 
Sbjct: 257 TPCFRSEAGSAGRDTRGLIRMHQFNKVEMVKFS-KPENSYDELEKMTQNAGNIMEKLGLP 315

Query: 192 SIPMRAESGPIG--GDLSHEFIV 212
              +   +G +G    ++H+  V
Sbjct: 316 YHVITLSTGDMGFSAAMTHDLEV 338


>gi|225447618|ref|XP_002270988.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 670

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++     G   +  P +  ADLW  SG  D Y + M    
Sbjct: 294 GLVFWHPKGAIVRHIIEDSWKKIHIEHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQI 353

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              D+     P +      I++  + SYR+ P    ++   +R EL     G+ R R F 
Sbjct: 354 TIEDELYQLRPMNCPYHILIYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT 413

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 414 QDDAHIFCL 422


>gi|319400957|gb|EFV89176.1| histidyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 42/75 (56%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D +  +I  Q   AD L     V++G + + ++++ +K+ ++G  
Sbjct: 347 KLINDLRRNGIKVDKDYLNRKIKGQMKQADRLNAKYTVVIGDQELENNEIGVKNMISGET 406

Query: 427 EDMSLEEVINYASHR 441
           E++ L+E+INY  +R
Sbjct: 407 ENVQLDELINYFKNR 421


>gi|242242903|ref|ZP_04797348.1| histidyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233618|gb|EES35930.1| histidyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 42/75 (56%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D +  +I  Q   AD L     V++G + + ++++ +K+ ++G  
Sbjct: 347 KLINDLRRNGIKVDKDYLNRKIKGQMKQADRLNAKYTVVIGDQELENNEIGVKNMISGET 406

Query: 427 EDMSLEEVINYASHR 441
           E++ L+E+INY  +R
Sbjct: 407 ENVQLDELINYFKNR 421


>gi|212531825|ref|XP_002146069.1| threonyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210071433|gb|EEA25522.1| threonyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 541

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ +   +R +  + G  E+  P +    LW  SG + +Y  +M 
Sbjct: 89  YSPGSPLFLPNGTHIINKLIGFLRAQYRQYGFREVLTPNIYKKSLWEISGHWQNYKDDMY 148

Query: 95  RLADRNDKAMIYGPTHEEVMTD-----------IFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R       G   E+               +F+S   SYR+LP  +       R+E+
Sbjct: 149 EVRGRGATGETEGELGEDEQYGLKPMNCPGHCLLFKSQNHSYRDLPVRYADFSPLHRNEI 208

Query: 144 RPRF-GVMRSREFLMKDAYSF 163
                G+ R R F   D + F
Sbjct: 209 SGSLSGLTRVRRFHQDDGHIF 229


>gi|262305729|gb|ACY45457.1| glu- + pro-tRNA synthetase [Eumesocampa frigilis]
          Length = 133

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            S RGI+ G   + G  +S   +  F+   G   +    S+G+ + R + A++    D K
Sbjct: 14  ASGRGIQGGTSHHLGQNFSKMFNICFEDEKGDKQFAFQNSWGL-STRTIGAMVMIHGDNK 72

Query: 337 GIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSK 374
           G++ P  VA +++ +I          A  +    +CE I  RL K
Sbjct: 73  GLVLPPQVACYQVVIIPCGVTATMSSAEKESLLKSCELIQERLQK 117


>gi|171185885|ref|YP_001794804.1| glycyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|170935097|gb|ACB40358.1| glycyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 583

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 320 GAMRVVAAVIE---SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           G  R+   V+E   +  DG+  +  P  VAP    ++ I    +   +  +++  RL++ 
Sbjct: 444 GLDRIFYVVLEHAVTEEDGRRYLRLPPDVAPVAACILPIVKKSEYV-EIGKRLARRLAQE 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V ++D G  IGS++A+ D +G PL V +  K  ++  V ++ R T  +  +  E+V 
Sbjct: 503 GFYVLYEDDG-TIGSRYALCDEIGTPLAVTIDEKTPAEGTVTVRDRDTRRQVRVKTEQVQ 561

Query: 436 NYAS 439
            + +
Sbjct: 562 AFVA 565


>gi|224023751|ref|ZP_03642117.1| hypothetical protein BACCOPRO_00467 [Bacteroides coprophilus DSM
           18228]
 gi|224016973|gb|EEF74985.1| hypothetical protein BACCOPRO_00467 [Bacteroides coprophilus DSM
           18228]
          Length = 285

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 18/159 (11%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIESSHDGK 336
           +G  +  GT    Y+LP      + G+D + H  V +     G+M R VA +IE +  GK
Sbjct: 120 IGRRWQLGTIQVDYNLPERFQLEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTA-GK 178

Query: 337 GIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             +W  PD VA   +S        +   +  + +   L K       DD  E+IG +   
Sbjct: 179 FPLWLTPDQVAILPVS--------EKYNEYADHVRLELKKNDIRAIVDDRNEKIGRKIRD 230

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            ++   P  +IVG K   + +V ++ +  G +  M +E+
Sbjct: 231 NEMKRIPYMLIVGEKEAENEEVSVRKQGEGDQGTMKIED 269


>gi|70931535|ref|XP_737437.1| glycine--tRNA ligase [Plasmodium chabaudi chabaudi]
 gi|56512826|emb|CAH76673.1| glycine--tRNA ligase, putative [Plasmodium chabaudi chabaudi]
          Length = 328

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF   QI L FR+E+ PR G++R REF M +   F   PE S H
Sbjct: 200 MPFAGAQIGLGFRNEISPRNGLLRVREFEMGEIEYF-FNPEKSNH 243


>gi|15668403|ref|NP_247199.1| glycyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2500998|sp|Q57681|SYG_METJA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|1499005|gb|AAB98213.1| glycyl-tRNA synthetase (glyS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 577

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 8/132 (6%)

Query: 316 SYGIGAMRVVAAVIESSH-DGKGIIWPD---SVAPFKISLINIKAHDQVCRDACEKIYAR 371
           SYGI   R+   ++E S+ + +  ++ D   S+AP K  ++ +   D + + A E I   
Sbjct: 449 SYGID--RITYCLLEHSYREEEDRVYLDLKPSIAPIKAYVLPLVNKDDMPKIAKE-IEQM 505

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G    +DD G  IG ++  AD +G P  + V  + + D  V ++ R T  +  + +
Sbjct: 506 LRENGIIAEYDDSG-AIGRRYMRADEIGVPFCITVDGQTLEDRTVTVRERNTREQVRVKI 564

Query: 432 EEVINYASHRFS 443
           +E+++Y   R  
Sbjct: 565 DELVDYLKERLK 576



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           FR   + +RN LPF   QI   +R+E+ PR GV+R REF   +   F + PE  +H 
Sbjct: 173 FRRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLREFTQAEIEYF-VHPERKEHE 228


>gi|26553858|ref|NP_757792.1| seryl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|30173161|sp|Q8EW01|SYS_MYCPE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|26453865|dbj|BAC44196.1| seryl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 426

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG K +  +  +  +     G +EMS+P + ++     +G+   + +++  L + +    
Sbjct: 170 LGSKLMRALQMLTLDINTSNGYLEMSLPVIVNSASLTSTGQLPKFKEDLFALENSD---Y 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F    L FR E     +   G++R  +F   + 
Sbjct: 227 YLSPTLEVQLTNYYRNEILEESALPMKFTASSLNFRSEAGSAGKDTRGIIRQHQFYKTEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            +  + PE S  +  +M ++   I   L L
Sbjct: 287 VNL-VHPEKSYQALEEMTLNAESILEALEL 315


>gi|83764945|dbj|BAE55089.1| unnamed protein product [Aspergillus oryzae]
          Length = 656

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ + +E  +      + +G++ +P ++AP K+ ++ +  H    R    ++
Sbjct: 504 SFGIG--RILYSTLEHVYWSREGDEARGVLSFPPAIAPTKVLIVPLSNHASF-RPLSHRL 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             ++ ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R
Sbjct: 561 MMKMRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDR 613



 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   + + PEG K
Sbjct: 238 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEGGK 282


>gi|167044354|gb|ABZ09032.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG6C9]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 66/332 (19%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SY+NLP+  Y++ +  FR E      G+ R R F M D ++F                  
Sbjct: 302 SYKNLPYKLYELTRYSFRREQSGELVGLRRLRAFTMPDCHAF------------------ 343

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG------ETQVFCSKDFMDFPIPSE 235
                    K +P   +      DLS E  VL+  G      ET +  ++DF        
Sbjct: 344 --------CKDMPQAIDEFGKRFDLSRE--VLSGLGIEENDYETGIRFTEDFY------- 386

Query: 236 NTDFDDIISLNS------IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           N + + I  + S      +VE W   +            D L     +S   I+V +   
Sbjct: 387 NKNKELIKQMVSKVGKPVLVEMWKEKFFYFVLKWEFNFVDDLGRASALSTDQIDVENAKR 446

Query: 290 FGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAM-RVVAAVIE----SSHDGKGIIWPDS 343
           +G         TF     +  Y + + +   GA+ RV+ A++E       DGK   +P  
Sbjct: 447 YGI--------TFTDEKNEQQYPIILHNSPSGAVERVIYALLEKFAKQIKDGKRPQFPLW 498

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++ LI +K  D     + + +  +L++    V  DD  + IG +   A+       
Sbjct: 499 LAPIQVRLIPLK--DDFLEFSSD-LANKLTEQNIRVDIDDRNDTIGKRIRDAEKEWISYV 555

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +++G + V+ S + ++ R TG    +S+E+ +
Sbjct: 556 LVIGEREVNSSSLSVRDRTTGDVRQLSIEDFV 587


>gi|325843420|ref|ZP_08167978.1| glycine--tRNA ligase [Turicibacter sp. HGF1]
 gi|325489342|gb|EGC91716.1| glycine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 457

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 70/134 (52%), Gaps = 18/134 (13%)

Query: 319 IGAMRVVAA---------VIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEK 367
           +GA RV  A          +E+    + + +  ++AP+K++++ +  K ++Q       +
Sbjct: 328 VGADRVTLAFLVDAYAEETLENGETREVLKFHPALAPYKVAVLPLVKKLNEQAL-----E 382

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           ++A LSK    V +D+ G  IG ++   D +G P  VI     + D KV ++HR T  +E
Sbjct: 383 VFADLSK-HMMVDYDEAG-TIGKRYRRQDAIGTPFCVIFDYDSLEDKKVTVRHRDTMEQE 440

Query: 428 DMSLEEVINYASHR 441
            ++++E++ Y + +
Sbjct: 441 RVAIDELVEYITSK 454


>gi|297801992|ref|XP_002868880.1| hypothetical protein ARALYDRAFT_352903 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314716|gb|EFH45139.1| hypothetical protein ARALYDRAFT_352903 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 679

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 106 YGPT-------HEEVMTDIFRSHIKSY----RNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +GPT         E    IF + +  Y    R LP    Q+   FR+E+ PR G +R+RE
Sbjct: 231 FGPTGSSLGYLRPETAQGIFVNFMNYYNDNGRKLPLAVAQVGRVFRNEISPRQGPIRARE 290

Query: 155 FLMKDAYSFDLTPEGSKH 172
           FL+ +   F + PE   H
Sbjct: 291 FLLAEIEHF-VDPENKSH 307


>gi|169612057|ref|XP_001799446.1| hypothetical protein SNOG_09144 [Phaeosphaeria nodorum SN15]
 gi|160702428|gb|EAT83336.2| hypothetical protein SNOG_09144 [Phaeosphaeria nodorum SN15]
          Length = 629

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           + + +PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 237 NQQQMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 283


>gi|223994633|ref|XP_002287000.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220978315|gb|EED96641.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 683

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH-SYNKMFVSYLRI 184
           + +PF   QI L FR+E+ PR G++R REF M +   F + P+   H +++ +    L +
Sbjct: 273 QKMPFAAAQIGLGFRNEIAPRSGLLRVREFCMGEIEHF-VNPDDKSHPNFSSVANKELVL 331

Query: 185 FHR 187
           F R
Sbjct: 332 FGR 334


>gi|307109063|gb|EFN57302.1| hypothetical protein CHLNCDRAFT_34933 [Chlorella variabilis]
          Length = 290

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +RSREFL ++ ++   T 
Sbjct: 160 PTSETVMYPYYAQWIRSHRDLPLRLNQWTNVVRWEFKHPTPFIRSREFLWQEGHTCFATK 219

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y R++  L
Sbjct: 220 EEADTEVYQILDLYRRVYEEL 240


>gi|255071725|ref|XP_002499537.1| predicted protein [Micromonas sp. RCC299]
 gi|226514799|gb|ACO60795.1| predicted protein [Micromonas sp. RCC299]
          Length = 722

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 4/161 (2%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           ++Y L I +   RD  +    L       H  S G   +LP G K  + +   IRE+   
Sbjct: 280 AEYKLRIEEAKKRDHRLIG--LNQELFFFHTLSPGSCFFLPQGAKIYNKLMEFIREKYWE 337

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + + DLW  SG    Y + M    D         P +      +F +  +
Sbjct: 338 YEYDEVITPNVYNFDLWKTSGHAAHYKENMFSF-DVEKAEFGLKPMNCPGHCVMFGNRKR 396

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           S+R LP       +  R+E      G+ R R F   DA+ F
Sbjct: 397 SFRELPMRLADFGVLHRNEFSGALHGLTRVRRFQQDDAHIF 437


>gi|163760291|ref|ZP_02167374.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162282690|gb|EDQ32978.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 668

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 21/210 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + H  +   G+  W   G K   N+ A +R     
Sbjct: 234 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHSKGWKMFQNLLAYMRRRLEN 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
               E++ P +    LW  SG +  Y + M  +            + +++     P +  
Sbjct: 290 DYE-EVNAPQILDKSLWETSGHWGWYQENMFAVKSAHAFTNPDDEEADNRIFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E  +
Sbjct: 349 GHVQIFKHGLKSYRDLPVRLAEFGNVHRYEPSGALHGLMRVRAFTQDDAHVF-CTEEQLE 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
               K+    + ++   G + + ++  + P
Sbjct: 408 AECLKINDLMMSVYSDFGFEEVVVKLATRP 437


>gi|115524346|ref|YP_781257.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|115518293|gb|ABJ06277.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris BisA53]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG +D Y + M       D+A         P +      I++  +
Sbjct: 316 EVNAPQILDKVLWETSGHWDWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHIQIYKHGL 375

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 376 KSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVF 417


>gi|327311816|ref|YP_004338713.1| glycyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326948295|gb|AEA13401.1| glycyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 588

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 320 GAMRVVAAVIESS----HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSK 374
           G  R++  V+ES+     D K +  P  +AP    ++ I K  D V       +  RL +
Sbjct: 444 GLDRILYVVLESAAVVEDDRKYLRLPPDIAPITACILPIVKRRDYVAIGV--DLARRLWR 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G    +DD G  IGS++A  D +G P+ V +      D+ V I+ R +  +  + + +V
Sbjct: 502 AGITALYDDEG-TIGSRYAECDEIGTPIAVTIDEMTPKDNTVTIRDRDSRRQIRIDIGKV 560

Query: 435 INYA 438
           +++A
Sbjct: 561 VDFA 564


>gi|304314183|ref|YP_003849330.1| glycyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587642|gb|ADL58017.1| glycyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 564

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           F+  ++ +RN LPF   Q+   +R+E+ PR GV+R REF   +A  F + PE   H
Sbjct: 171 FKRLLRFFRNRLPFGVVQLGKSYRNEISPRQGVIRLREFTQAEAEIF-VNPEDKSH 225


>gi|296084987|emb|CBI28402.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++     G   +  P +  ADLW  SG  D Y + M    
Sbjct: 301 GLVFWHPKGAIVRRIIEDSWKKIHIEHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQI 360

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              D+     P +      I++  + SYR+ P    ++   +R EL     G+ R R F 
Sbjct: 361 TIEDELYQLRPMNCPYHILIYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT 420

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 421 QDDAHIFCL 429


>gi|328851152|gb|EGG00310.1| hypothetical protein MELLADRAFT_39835 [Melampsora larici-populina
           98AG31]
          Length = 658

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +++E +         +G++  P S++P K+ ++ +    +V R   + I
Sbjct: 505 SFGIG--RILYSLLEHTFWTREEDINRGVLSLPPSISPIKVLIVPLSG-TEVFRPIIKII 561

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L KVG     DD    IG ++A  D LG P  + V    V +  V ++ R +  +  
Sbjct: 562 SDKLRKVGLANRVDDSNASIGKRYARNDELGTPFGITVDFGSVKNQTVTLRERDSTKQLI 621

Query: 429 MSLEEVI 435
            S++EV+
Sbjct: 622 GSIDEVL 628



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           LPF   QI   FR+E+ P+ G++R REF M +   F L P+   H
Sbjct: 244 LPFASAQIGRSFRNEISPKQGLLRVREFTMAEVEHF-LDPKSKDH 287


>gi|255545202|ref|XP_002513662.1| prolyl-tRNA synthetase, putative [Ricinus communis]
 gi|223547570|gb|EEF49065.1| prolyl-tRNA synthetase, putative [Ricinus communis]
          Length = 548

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKE+       ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R +   
Sbjct: 163 GKEL-------EEKLVVRPTSETIVNHMFTQWIHSYRDLPLMVNQWANVTRWEMRTK-PF 214

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R+ EFL ++ ++   TPE ++    +M   Y +
Sbjct: 215 VRTLEFLWQEGHTAHATPEEAEKEALQMIDVYTK 248


>gi|316933996|ref|YP_004108978.1| seryl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601710|gb|ADU44245.1| seryl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 496

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F   +  S 
Sbjct: 297 PTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI 356

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             TPE SK  + +M      +  RLGL    M   +G +G
Sbjct: 357 -TTPEQSKDEHERMLACAEEVLRRLGLHYRVMTLCTGDMG 395


>gi|114706249|ref|ZP_01439151.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114538110|gb|EAU41232.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 670

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 24/219 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R   + H  +   G+  W   G +   ++ + +R   
Sbjct: 233 KNYLHMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHSKGWRMFQSLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----------ADRNDKAMIYGPTH 110
           + T   E++ P +    LW  SG +  Y + M  +           A+ + +     P +
Sbjct: 289 DGTYE-EVNAPQILDKALWETSGHWGWYQENMFAVKSAHAFTRPDDAEADHRVFAIKPMN 347

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEG 169
                 IF+  +KSYR LP  + +     R E      G+MR R F   DA+ F  T E 
Sbjct: 348 CPGHVQIFKHGLKSYRELPIRYAEFGNVHRYEPSGALHGLMRVRGFTQDDAHVF-CTEEQ 406

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGD 205
                 ++    L I+   G + I ++  + P   +G D
Sbjct: 407 LAAECLRINDLILSIYADFGFEEIVVKLSTRPEKRVGSD 445


>gi|290878134|emb|CBK39193.1| Grs1p [Saccharomyces cerevisiae EC1118]
          Length = 667

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S       + + ++ +P  VAP K+ L+ +  H  +     E +
Sbjct: 510 SFGIG--RIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTTE-V 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +  +   D  V ++ R +  +  
Sbjct: 567 AKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVR 626

Query: 429 MSLEEVI 435
            S+E+VI
Sbjct: 627 GSVEDVI 633


>gi|318061953|ref|ZP_07980674.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actG]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP G      +   +R  +   G   +  P L   +L+V SG +  Y  +M    
Sbjct: 31  GLPYLLPDGASVRHALEEYVRGLEVADGYQHVHSPVLGKQELYVRSGHWAHYRADMFPPM 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +  +  P+       I+R+  +SYR LP    ++   FR E      G+ R R   
Sbjct: 91  EVGGEHFVLRPSLCPHHALIYRAQARSYRELPLRIAELGGMFRAEPSGTLGGLTRVRAIH 150

Query: 157 MKDAYSFDLTPE 168
           + DA+ F   PE
Sbjct: 151 LNDAHLF-CAPE 161


>gi|302384826|ref|YP_003820648.1| prolyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302195454|gb|ADL03025.1| prolyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 477

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G    FG+ ++      +   + K  YV   S+G+   R++ A+I    D  G+
Sbjct: 225 GKALQSGTSHNFGSGFAKAFEIQYSDKENKLQYVHQTSWGM-TTRLIGAIIMVHGDDNGL 283

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P  +AP ++ ++ ++   +   +   ++   LS     V  DD  +  G +F+ +++ 
Sbjct: 284 VLPPRIAPTQVIVVPVQQQKEGVLEKAFELKQVLSNYKVKV--DDSDKSPGWKFSESEMR 341

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G P++V +G + + +++  +  R T  +  +S++++
Sbjct: 342 GIPVRVEIGPRDILENQAVLVRRDTHEKITVSIDQL 377


>gi|317052582|ref|YP_004113698.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316947666|gb|ADU67142.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 657

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRN 100
           P G    + +   IRE     G  E+  P +   +LW  SG YD+Y + M         N
Sbjct: 273 PKGTVVYNQLLEFIREMYRYYGYGEVITPQVMDVELWKRSGHYDNYVENMYFTELDGQHN 332

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKD 159
               +  PTH  VM  I+ +  +SYR+LP  +       R E      G+ R R F   D
Sbjct: 333 ALKPMNCPTH--VM--IYGASSRSYRDLPVRYADFGRLHRYERSGVVQGLTRVRTFCQDD 388

Query: 160 AYSF 163
           A+ F
Sbjct: 389 AHIF 392


>gi|85716379|ref|ZP_01047351.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85696736|gb|EAQ34622.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG ++ Y + M       D+A         P +      +F+  +
Sbjct: 316 EVNAPQMLDKALWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKHGL 375

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 376 KSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF 417


>gi|330940966|ref|XP_003306011.1| hypothetical protein PTT_19018 [Pyrenophora teres f. teres 0-1]
 gi|311316712|gb|EFQ85899.1| hypothetical protein PTT_19018 [Pyrenophora teres f. teres 0-1]
          Length = 657

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           + + +PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 237 NMQQMPFASASIGKSFRNEISPRQGLLRVREFLMAEIEHF-VDPEGGK 283



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R+  A+ E         + + ++ +P +VAP K+ ++ + ++         K+
Sbjct: 505 SFGIG--RIFYALCEHVYWTREQDEARAVLSFPPAVAPTKVLIVPLSSNPDF-EPFVRKL 561

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     D  G  IG ++A  D LG PL + +  + + D+   ++ R T  +  
Sbjct: 562 KDKLRRLGISNRVDASGASIGKRYARNDELGTPLGITIDFQSIKDNTFTLRDRDTTEQVR 621

Query: 429 MSLEEV 434
            SL+E+
Sbjct: 622 SSLDEI 627


>gi|218199143|gb|EEC81570.1| hypothetical protein OsI_25016 [Oryza sativa Indica Group]
          Length = 448

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 67  EEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTK-PFIRTLEFLWQEG 125

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           ++   T E ++    +M   Y +  + +  +  IP R
Sbjct: 126 HTAHATLEEAEKEAMQMIDVYTKFAYEQAAIPVIPGR 162


>gi|190408722|gb|EDV11987.1| glycine-tRNA ligase [Saccharomyces cerevisiae RM11-1a]
 gi|207347667|gb|EDZ73764.1| YBR121Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256268958|gb|EEU04303.1| Grs1p [Saccharomyces cerevisiae JAY291]
 gi|323349729|gb|EGA83944.1| Grs1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 667

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S       + + ++ +P  VAP K+ L+ +  H  +     E +
Sbjct: 510 SFGIG--RIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTTE-V 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +  +   D  V ++ R +  +  
Sbjct: 567 AKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVR 626

Query: 429 MSLEEVI 435
            S+E+VI
Sbjct: 627 GSVEDVI 633


>gi|212223791|ref|YP_002307027.1| glycyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212008748|gb|ACJ16130.1| glycyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 567

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           + K  +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   +
Sbjct: 154 DQKGYLRPETAQGIFVNFRRLNAFARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAE 213

Query: 160 AYSFDLTPEGSKHS-YNKMFVSYLRIF----HRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           A  F   P+ ++H  ++++    LR++        L  I M AE     G + + F    
Sbjct: 214 AEIF-FNPKETEHPHFDEVKDEVLRLYPIENQLKNLGEIEMTAEEAVKKGYIMNTFFAY- 271

Query: 215 DTGETQVFCSKDFMDFPIPSENTDF 239
                 V   +  +D  IP     F
Sbjct: 272 ----YMVMVKRVLLDIGIPESAIRF 292


>gi|308805643|ref|XP_003080133.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058593|emb|CAL54300.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 625

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 76/414 (18%), Positives = 159/414 (38%), Gaps = 64/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G +    +    ++     G   +  P +   +LW  SG  D Y + M +  
Sbjct: 248 GLVFWHPKGAQMRHMIETYWKDLHLARGYELLYSPHVARQELWQTSGHSDFYSENMYQPI 307

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              ++     P +      +++    SY++LP  + ++   +R E      G+ R R F 
Sbjct: 308 KVEEEMYQLKPMNCPFHIVVYQDGYYSYKDLPIRWAELGTVYRYERSGTMHGLFRVRGFT 367

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             DA+ F L P+       ++                           DL+ E       
Sbjct: 368 QDDAHIFCL-PDQITSEIKRVL--------------------------DLTEE------- 393

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +  +  F DF + + +T  +  +  ++I   WT    A  D   EK +D + ++  
Sbjct: 394 ----ILSTFGFTDFEV-NLSTRPEKSVGEDAI---WTTAENALRDALGEKGWDYIVDDGG 445

Query: 277 VSARG--IEVGHIFYFGTKY---------SLPMSATFKGAD---GKDHYVQMGSYGIGAM 322
            +  G  I++  +   G K+         +LP        D    K   + +     G++
Sbjct: 446 GAFYGPKIDIKILDAIGRKWQCSTVQLDFNLPERFDLNYIDRDNNKQRPIMIHRAIFGSL 505

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  ++ G+  +W   +AP ++ L+ +   D+V  D  E + A+L + GC V   
Sbjct: 506 ERFFGILTENYAGEFPLW---LAPVQVRLLPVT--DEVS-DYTEGVAAKLREAGCRVE-I 558

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G+++      A+    P+  +VG    +++ + ++    G    +S++EV++
Sbjct: 559 CTGQRLAKLVRTAEKAKIPVMAVVGRDEAANNTLAVRTYKDGDVGSLSVDEVLS 612


>gi|224027144|ref|ZP_03645510.1| hypothetical protein BACCOPRO_03905 [Bacteroides coprophilus DSM
           18228]
 gi|224020380|gb|EEF78378.1| hypothetical protein BACCOPRO_03905 [Bacteroides coprophilus DSM
           18228]
          Length = 326

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG+  WLP G      +   +R  Q R    E+  P + +  L+V SG Y  YGK+  +
Sbjct: 225 GKGLPMWLPKGTALRLRLQDFLRRIQARYDYQEVICPPIGNKLLYVTSGHYAKYGKDAFQ 284

Query: 96  LADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPF 130
                ++   Y   P +      I+++  +SYR+LP 
Sbjct: 285 PIHTPEEGEEYFLKPMNCPHHCMIYKNSPRSYRDLPL 321


>gi|169351083|ref|ZP_02868021.1| hypothetical protein CLOSPI_01862 [Clostridium spiroforme DSM 1552]
 gi|169292145|gb|EDS74278.1| hypothetical protein CLOSPI_01862 [Clostridium spiroforme DSM 1552]
          Length = 457

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 68/134 (50%), Gaps = 18/134 (13%)

Query: 319 IGAMRVVAAVIESSHDGKGI----------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +GA R+  +V+  S++ + +          + P ++AP+K++++ +        D   ++
Sbjct: 328 VGADRLFLSVLCDSYEEETLEDGETRVVMKLLP-ALAPYKVAILPLTKKQS---DKASEV 383

Query: 369 YARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           Y+ L+K   C+    D+  QIG ++   D +G P  V V    + D+ V ++ R T  + 
Sbjct: 384 YSMLAKHFSCEF---DVAGQIGKRYRRQDAIGTPFCVTVDFDTLEDNTVTVRDRDTMEQI 440

Query: 428 DMSLEEVINYASHR 441
            + ++E+++Y S +
Sbjct: 441 RLPIDELVDYISKK 454


>gi|323334582|gb|EGA75956.1| Grs1p [Saccharomyces cerevisiae AWRI796]
          Length = 597

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S       + + ++ +P  VAP K+ L+ +  H  +     E +
Sbjct: 440 SFGIG--RIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTTE-V 496

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +  +   D  V ++ R +  +  
Sbjct: 497 AKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVR 556

Query: 429 MSLEEVI 435
            S+E+VI
Sbjct: 557 GSVEDVI 563


>gi|218516937|ref|ZP_03513777.1| seryl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+S P +  A+    +G    + +++ +  D  D+ +I  PT E  +T++ R  I  
Sbjct: 111 GYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD--DRYLI--PTAEVTLTNLVREEILE 166

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     + +   + +M   
Sbjct: 167 QEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TDADSAIAEHERMTAC 225

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 226 AEEVLKRLGLHFRTMTLCTGDMG 248


>gi|151946513|gb|EDN64735.1| glycyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 667

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S       + + ++ +P  VAP K+ L+ +  H  +     E +
Sbjct: 510 SFGIG--RIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTTE-V 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +  +   D  V ++ R +  +  
Sbjct: 567 AKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVR 626

Query: 429 MSLEEVI 435
            S+E+VI
Sbjct: 627 GSVEDVI 633


>gi|323356077|gb|EGA87882.1| Grs1p [Saccharomyces cerevisiae VL3]
          Length = 597

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S       + + ++ +P  VAP K+ L+ +  H  +     E +
Sbjct: 440 SFGIG--RIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTTE-V 496

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +  +   D  V ++ R +  +  
Sbjct: 497 AKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVR 556

Query: 429 MSLEEVI 435
            S+E+VI
Sbjct: 557 GSVEDVI 563


>gi|288561385|ref|YP_003424871.1| threonyl-tRNA synthetase ThrS [Methanobrevibacter ruminantium M1]
 gi|288544095|gb|ADC47979.1| threonyl-tRNA synthetase ThrS [Methanobrevibacter ruminantium M1]
          Length = 608

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 133/331 (40%), Gaps = 69/331 (20%)

Query: 124 SYRNLPFTFYQIQL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +++NLP   Y++    FR E R    G+ R R F M D +SF      +   ++      
Sbjct: 300 TWKNLPAKVYELSTYSFRFEKRGEVVGLKRLRAFTMPDMHSFCADMPQALEEFDA----- 354

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                      + M  ++G +  D+++E I  A         ++DF +     EN     
Sbjct: 355 ----------QVDMCVQTG-VDLDVNYEAIFRA---------TEDFYE-----EN----- 384

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                   ++W    A    +    L + LPE K   +  I+   I Y G     P +  
Sbjct: 385 --------KEWME--ATAKRIGKPLLLEILPERKHYWSCKIDFAAIDYLGRPIENP-TVQ 433

Query: 302 FKGADGKDHYVQ-------------MGSYGIGAM-RVVAAVIESS--HDGKGIIWPDSVA 345
                GK   ++             +     G++ RV+ +++E++   DGK  + P  ++
Sbjct: 434 IDVESGKRFGIEYIDEEENPQNPIILHCSPTGSVERVICSLLENTAKEDGKAPMLPTWLS 493

Query: 346 PFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           P ++ ++ I + H +      +KI A   +V  D   D +G++I S    A     P  +
Sbjct: 494 PSQVRILPIGEKHLEYANQLADKIAAENIRVDLDNSDDRVGKKIRS----ASKEWVPYII 549

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           ++G K V +    +  R +G + DM+ EE+I
Sbjct: 550 VIGDKEVENDVYSVTVRESGEKVDMTAEELI 580


>gi|302518216|ref|ZP_07270558.1| LOW QUALITY PROTEIN: threonyl-tRNA synthetase [Streptomyces sp.
           SPB78]
 gi|302427111|gb|EFK98926.1| LOW QUALITY PROTEIN: threonyl-tRNA synthetase [Streptomyces sp.
           SPB78]
          Length = 448

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP G      +   +R  +   G   +  P L   +L+V SG +  Y  +M    
Sbjct: 31  GLPYLLPDGASVRHALEEYVRGLEVADGYQHVHSPVLGKQELYVRSGHWAHYRADMFPPM 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   +  +  P+       I+R+  +SYR LP    ++   FR E      G+ R R   
Sbjct: 91  EVGGEHFVLRPSLCPHHALIYRAQARSYRELPLRIAELGGMFRAEPSGTLGGLTRVRAIH 150

Query: 157 MKDAYSFDLTPE 168
           + DA+ F   PE
Sbjct: 151 LNDAHLF-CAPE 161


>gi|326499774|dbj|BAJ86198.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 541

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 160 EEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTK-PFIRTLEFLWQEG 218

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           ++   T E ++    +M   Y +  + +  +  IP R
Sbjct: 219 HTAHATLEEAEKEAMQMIDVYTKFSYEQAAIPVIPGR 255


>gi|190891515|ref|YP_001978057.1| seryl-tRNA synthetase [Rhizobium etli CIAT 652]
 gi|238692532|sp|B3PXU3|SYS_RHIE6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|190696794|gb|ACE90879.1| seryl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 427

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+S P +  A+    +G    + +++ +  D  D+ +I  PT E  +T++ R  I  
Sbjct: 191 GYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD--DRYLI--PTAEVTLTNLVREEILE 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     + +   + +M   
Sbjct: 247 QEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TDADSAIAEHERMTAC 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 306 AEEVLKRLGLHFRTMTLCTGDMG 328


>gi|170748342|ref|YP_001754602.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|170654864|gb|ACB23919.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G      + A +R  + R    E++ P +    LW  SG +  Y + 
Sbjct: 257 QEEGPGVVFWHAKGWTIFQELIAYMRR-RLRGDYAEVNAPQILDKALWETSGHWGWYREN 315

Query: 93  MLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       ++A         P +      IF+  +KSYR+LP    +  +  R E     
Sbjct: 316 MFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRMAEFGIVHRYEPSGAM 375

Query: 148 -GVMRSREFLMKDAYSF 163
            G+MR R F   DA+ F
Sbjct: 376 HGLMRVRGFTQDDAHVF 392


>gi|332019229|gb|EGI59739.1| Bifunctional aminoacyl-tRNA synthetase [Acromyrmex echinatior]
          Length = 2487

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 18/163 (11%)

Query: 277  VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH--YVQMGSYGIGAMRVVAAVIESSHD 334
            ++ R I+     Y G  +S   +   +G  G++   +V   S+G+   R +  +I    D
Sbjct: 2198 INGRAIQGATSHYLGQNFSKMFNIQVEGIAGREEKTFVYQNSWGL-TTRTIGVMIMVHGD 2256

Query: 335  GKGIIWPDSVAPFKISLI------NIKAH-DQVCRDACEKIYARLSKVGCDVFWDD--MG 385
             +G++ P +VAP +I +I      N+  H  +     C+ +   L + G      D  + 
Sbjct: 2257 DRGLVLPPNVAPIQIIVIPCGIAVNMDEHTKESILKKCDWLVRHLGQEGKFRVKSDCRLN 2316

Query: 386  EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
               G +F   +L G P+++ VG K +      +K+++T +R D
Sbjct: 2317 RTPGWKFNHWELKGVPIRLEVGPKDL------LKNQVTVVRRD 2353


>gi|90424612|ref|YP_532982.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|90106626|gb|ABD88663.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG ++ Y + M       D+A         P +      IF+  +
Sbjct: 315 EVNAPQILDKALWEISGHWEWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKHGL 374

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 375 KSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVF 416


>gi|91977257|ref|YP_569916.1| seryl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|123735378|sp|Q136H4|SYS_RHOPS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|91683713|gb|ABE40015.1| seryl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
          Length = 434

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F   +  S 
Sbjct: 236 PTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI 295

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             TPE SK  + +M      +  RLGL    M   +G +G
Sbjct: 296 -TTPEKSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMG 334


>gi|291520560|emb|CBK75781.1| glycyl-tRNA synthetase, dimeric type [Butyrivibrio fibrisolvens
           16/4]
          Length = 397

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 135/336 (40%), Gaps = 77/336 (22%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           S + +PF   QI   FR+E+ P     R+REF   +   F     GS+  +      Y R
Sbjct: 122 SRKKVPFGIGQIGKSFRNEITPGNFTFRTREFEQMELEFF--CKPGSQDEW----FQYWR 175

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F R  L S+ M+ +   +  D   E +    TG T +    +F+ FP            
Sbjct: 176 GFCRDWLLSLGMKEDEMRLR-DHDPEELSFYSTGTTDI----EFL-FPF----------- 218

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---LPMSA 300
                   W   +   S    +     L +++ VS + +      YF  + +   LP   
Sbjct: 219 -------GWGELWGIASRTDYD-----LTQHQNVSGQDLT-----YFDDETNEKYLP--- 258

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVI-------ESSHDGKGII-----WPDSVAPFK 348
                     YV   S  +GA RVV A +       E   DGK  +     +  ++AP K
Sbjct: 259 ----------YVIEPS--LGADRVVLAFLCAAYDEEEVGKDGKSDVRTVLHFHPALAPVK 306

Query: 349 ISLINIKAHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           I ++ +    +   +  EK++A LSK   C+  +DD G  IG ++   D +G P  +   
Sbjct: 307 IGVLPLS---KKLNEGAEKVFAELSKKYNCE--FDDRG-TIGKRYRRMDEIGTPFCITYD 360

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                D  V I+HR +  +E +++ ++  Y + +F+
Sbjct: 361 FDSEEDHMVTIRHRDSMEQERIAIADLDAYFADKFT 396


>gi|255530329|ref|YP_003090701.1| seryl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255343313|gb|ACU02639.1| seryl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGI 338
           R +EV  +  F T  S  +   FKGA GK      +    +   R+VAA++E++   KGI
Sbjct: 348 RWLEVSSVSNFETYQSNRLKLRFKGATGKTQLAHTLNGSALALPRIVAAILENNQTAKGI 407

Query: 339 IWPDSVAPF 347
             P+ + P+
Sbjct: 408 KIPEVLVPY 416


>gi|209884754|ref|YP_002288611.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|209872950|gb|ACI92746.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 680

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 11/139 (7%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI--EMSVPTLQSADLWVESGRYDSYG 90
            +   G+  W   G      + A +R    R  A   E++ P +    LW  SG ++ Y 
Sbjct: 281 QEEGPGVVFWHAKGWTVFQEIIAYMR---RRLAADYDEVNAPQMLDKSLWETSGHWEWYR 337

Query: 91  KEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           + M       D+A         P +      IF+  +KSYR LP    +  +  R E   
Sbjct: 338 ENMFAAQSAGDEAEDKRWFAIKPMNCPGHVLIFKHGLKSYRELPIRLAEFGVVHRYEPSG 397

Query: 146 RF-GVMRSREFLMKDAYSF 163
              G+MR R F   DA+ F
Sbjct: 398 AMHGLMRVRGFTQDDAHIF 416


>gi|296271847|ref|YP_003654478.1| threonyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096022|gb|ADG91972.1| threonyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 602

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  WLP G +    +  I+ +     G   +  P +  + +W  SG   +Y + M    
Sbjct: 228 GLPMWLPNGARLRSKLEHILYKAHRVRGYEPVRGPEILKSKMWDISGHNANYSQNMYYTT 287

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
            D    AM   P +      IF++ + SY++LP   ++  +  R E+     G+ R REF
Sbjct: 288 IDEQQYAM--KPMNCVGHIQIFKNSLVSYKDLPKKLFEYGVVHRHEMSGAMHGLFRVREF 345

Query: 156 LMKDAYSF 163
              D++ F
Sbjct: 346 TQDDSHIF 353


>gi|222636488|gb|EEE66620.1| hypothetical protein OsJ_23204 [Oryza sativa Japonica Group]
          Length = 545

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 164 EEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTK-PFIRTLEFLWQEG 222

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           ++   T E ++    +M   Y +  + +  +  IP R
Sbjct: 223 HTAHATLEEAEKEAMQMIDVYTKFAYEQAAIPVIPGR 259


>gi|115524706|ref|YP_781617.1| seryl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|122296078|sp|Q07N47|SYS_RHOP5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|115518653|gb|ABJ06637.1| seryl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
          Length = 476

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F   +  S 
Sbjct: 278 PTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI 337

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             TPE SK  + +M      +  RLGL    M   +G +G
Sbjct: 338 -TTPEQSKDEHERMLACAEEVLRRLGLHYRVMTLCTGDMG 376


>gi|91977727|ref|YP_570386.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|91684183|gb|ABE40485.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Rhodopseudomonas palustris BisB5]
          Length = 687

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG +D Y + M       + A         P +      IF+  +
Sbjct: 322 EVNAPQILDKVLWETSGHWDWYRENMFAAQSAGENAEDKRWFALKPMNCPGHVQIFKHGL 381

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 382 KSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVF 423


>gi|189190276|ref|XP_001931477.1| glycyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973083|gb|EDU40582.1| glycyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           + + +PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 237 NMQQMPFASASIGKSFRNEISPRQGLLRVREFLMAEIEHF-VDPEGGK 283



 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R+  A+ E         + + ++ +P +VAP K+ ++ + ++         K+
Sbjct: 505 SFGIG--RIFYALCEHVYWTREQDEARAVLSFPPAVAPTKVLIVPLSSNPDF-EPFVRKL 561

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L ++G     D  G  IG ++A  D LG PL + +  + + D+   ++ R T  +  
Sbjct: 562 KDKLRRLGISNRVDASGASIGKRYARNDELGTPLGITIDFQSIKDNTFTLRDRDTTEQVR 621

Query: 429 MSLEEV 434
            SL+E+
Sbjct: 622 SSLDEI 627


>gi|33146799|dbj|BAC79747.1| putative prolyl-tRNA synthetase [Oryza sativa Japonica Group]
          Length = 545

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R +   +R+ EFL ++ 
Sbjct: 164 EEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTK-PFIRTLEFLWQEG 222

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMR 196
           ++   T E ++    +M   Y +  + +  +  IP R
Sbjct: 223 HTAHATLEEAEKEAMQMIDVYTKFAYEQAAIPVIPGR 259


>gi|307354084|ref|YP_003895135.1| threonyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157317|gb|ADN36697.1| threonyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 610

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 11/131 (8%)

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFW 381
           RV+ A++E++   +  + P  ++P ++ ++ + + H +   + C+KI    + V CD  +
Sbjct: 468 RVICALLENTASQEVPMLPVWLSPTQVRILPVSSKHTEYAGELCKKING--AGVRCD--F 523

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-----IREDMSLEEVIN 436
           DD  E +G +   A +   P  V+VG   +   K+ +  R         +E+M+ E++I+
Sbjct: 524 DDREESVGKKIREAGMDWVPYVVVVGDSEIESGKLPVTIRSMSKPKAPYKEEMTAEDLIS 583

Query: 437 YASHRFSNNRP 447
                   NRP
Sbjct: 584 KVKEDI-GNRP 593


>gi|241204765|ref|YP_002975861.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858655|gb|ACS56322.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 661

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+  +
Sbjct: 293 EVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKHGL 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+    
Sbjct: 353 KSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDLI 411

Query: 182 LRIFHRLGLKSIPMRAESGP 201
           L ++   G   + ++  + P
Sbjct: 412 LSVYKDFGFDEVTIKLSTRP 431


>gi|266622323|ref|ZP_06115258.1| glycine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288865966|gb|EFC98264.1| glycine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 319 IGAMRVVAAVIESSHD----GKGII-----WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA RV  A + S++D    G+G +     +  ++AP KI ++ +    +   +  EKIY
Sbjct: 71  LGADRVTLAFLCSAYDEEEIGEGDVRTVLHFHPAIAPVKIGVLPLS---KKLNEGAEKIY 127

Query: 370 ARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             LS+   C+  +DD G  IG ++   D +G P  V        D  V ++ R T  +  
Sbjct: 128 TELSRYYNCE--FDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDHAVTVRDRDTMEQVR 184

Query: 429 MSLEEVINYASHRF 442
           + + E+ NY   +F
Sbjct: 185 VPIAELKNYFEDKF 198


>gi|154150357|ref|YP_001403975.1| glycyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|153998909|gb|ABS55332.1| glycyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   ++ YR+ LPF   QI   +R+E+ PR G++R REF   +A  F    E ++H   K
Sbjct: 172 FARLLRFYRDKLPFGAVQIGKSYRNEISPRQGMIRLREFTQAEAEIFVHPNEKNRHPAFK 231

Query: 177 MFVSY 181
            +  Y
Sbjct: 232 RYADY 236


>gi|115376687|ref|ZP_01463915.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115366304|gb|EAU65311.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 4/147 (2%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G      +   +R E    G  E+  P +    +W  SG + ++   M  L D  +
Sbjct: 4   WHPRGFVLYQLLEERVRRELASGGYREVRTPQVLGQRIWESSGHWQNFRHGMFVLDD-GE 62

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           +     P        +F+    S+R+LP    +  L  R+E      G+ R R+F   D 
Sbjct: 63  RPFAMKPVSCPGHIQLFQRLAPSFRSLPLRMAEFGLVHRNESSGALHGLFRLRQFTQDDG 122

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           + F +  + +       F   LR F+R
Sbjct: 123 HIFCMEEQVADEV--AAFCRSLRAFYR 147


>gi|116252274|ref|YP_768112.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|123261550|sp|Q1MGA7|SYT_RHIL3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115256922|emb|CAK08016.1| putative threonyl-tRNA synthetase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 661

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+  +
Sbjct: 293 EVNAPQVLDKSLWETSGHWGWYRDSMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKHGL 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+    
Sbjct: 353 KSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDLI 411

Query: 182 LRIFHRLGLKSIPMRAESGP 201
           L ++   G   + ++  + P
Sbjct: 412 LSVYKDFGFDEVTIKLSTRP 431


>gi|46108732|ref|XP_381424.1| hypothetical protein FG01248.1 [Gibberella zeae PH-1]
          Length = 745

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + S G   +LP G +  + +  +I+ E  +    E+  P +  ADLW  SG +  Y + M
Sbjct: 339 EASPGSAFFLPHGVRIYNALMDLIKGEYQKRDFEEVMSPNMYKADLWKTSGHWGHYEENM 398

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                  +K  +  P +      IF     +Y++LP+         R+E      G+ R 
Sbjct: 399 FTFEVEKEKFGL-KPMNCPGHCKIFAHSDVTYKDLPWRMADFGTLHRNEFSGALSGLTRV 457

Query: 153 REFLMKDAYSF 163
           R F   DA+ F
Sbjct: 458 RRFQQDDAHIF 468


>gi|303244124|ref|ZP_07330462.1| glycyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302485509|gb|EFL48435.1| glycyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 576

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 316 SYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           SYGI   R+   ++E ++    D   +     VAP K+ +  +   + +   A  +I   
Sbjct: 449 SYGID--RITYCLLEHAYNEEEDRTYLKLKPQVAPIKVGVFPLVNKEGMAEIAM-RIKDN 505

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G    +DD G  IG ++   D +G P  + V  + + D  + I++R T  +  + +
Sbjct: 506 LRKNGIIAEYDDSG-AIGRRYMRMDEVGTPFCITVDGRTLEDGTITIRYRDTREQIRIKI 564

Query: 432 EEVINYASH 440
           +EVINY  +
Sbjct: 565 DEVINYIKN 573



 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           FR     +RN LPF   QI   +R+E+ PR GV+R REF   +A  F
Sbjct: 173 FRRLASFFRNKLPFGVAQIGKSYRNEISPRQGVIRLREFTQAEAEFF 219


>gi|313676633|ref|YP_004054629.1| glycyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312943331|gb|ADR22521.1| glycyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 492

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++AP K +++ +   D +     E IY  L K   +V +++    IG ++   DL+G P 
Sbjct: 387 ALAPVKAAILPLTKKDGLPEKGQE-IYKSL-KGAFNVVYEEAA-SIGKRYTRQDLIGTPF 443

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + V  + + D  V I+HR +  +E M + E+ +Y     S NR
Sbjct: 444 CIAVDHQTLEDETVTIRHRDSTEQERMPVSELESYIMKSTSFNR 487


>gi|212536096|ref|XP_002148204.1| glycyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210070603|gb|EEA24693.1| glycyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            +PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 240 QMPFASAAIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPEGGK 283


>gi|253744932|gb|EET01065.1| Prolyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/183 (18%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++   I   G ++S      +     ++ +  +   GI + RV+A  +    D +G
Sbjct: 248 CGRVLQTAGIHNLGQRFSSTFDILYANKANENVHPYLTCAGI-STRVLACALSIHGDSRG 306

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--------KVGCDV-FWDDMGEQI 388
           ++ P  +AP  + +I I    +  +++  ++  +++        K+G  V   DD  + +
Sbjct: 307 LVLPPLIAPIHVVIIPIGCGKKNNQESDRQVMEKVNEIADTLKLKLGLRVSIDDDFSKSM 366

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVINYASHRFSNNR 446
           G +    +L G PL++ +G + +++++  +  R  G   ++ +S+ +++  +S+   N+ 
Sbjct: 367 GDKLYYYELKGVPLRIEIGQRDLANNQCIVVPRDMGKDKKKAISITDILKVSSYATENHE 426

Query: 447 PVL 449
            V+
Sbjct: 427 LVI 429


>gi|255732025|ref|XP_002550936.1| threonyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240131222|gb|EER30782.1| threonyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 1059

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + S G   WLP G +  + +   +REE  + G  E+  P + S  LW  SG + +Y + M
Sbjct: 324 EMSPGSAMWLPHGTRIYNTLVETLREEYRKRGYDEVITPNMYSTKLWETSGHWQNYKENM 383

Query: 94  L 94
            
Sbjct: 384 F 384


>gi|254503029|ref|ZP_05115180.1| seryl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439100|gb|EEE45779.1| seryl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+S P L  +D    +G+   + +++ + A   D  +I  PT E  +T++    I 
Sbjct: 192 NGYTEVSPPLLVHSDPLYGTGQLPKFEEDLFKTA--TDHYLI--PTAEVPLTNLVAGEIM 247

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S   LP     +   FR E     R   G++R  +F   +  S   TPE S +   +M  
Sbjct: 248 SEDQLPLRVTALTYCFRSEAGSAGRDTRGMLRQHQFQKCELVSV-TTPEESLNELERMLG 306

Query: 180 SYLRIFHRLGLKSIPMRAESGPIG 203
               I  +LGL    M   +G +G
Sbjct: 307 CAEMILQKLGLHYRVMTLCTGDMG 330


>gi|289810945|ref|ZP_06541574.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 36

 Score = 40.8 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           + +G DG++  + MG YGIG  RVVAA IE + D
Sbjct: 1   SVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFD 34


>gi|242794846|ref|XP_002482459.1| glycyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218719047|gb|EED18467.1| glycyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 698

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            +PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 281 QMPFASATIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPEGGK 324



 Score = 36.6 bits (83), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +++E S+      + +G++ +P  V+P K+ L+ +  H+       +++
Sbjct: 546 SFGIG--RILYSLLEHSYWHRAGDEARGVLSFPPVVSPTKVLLVPLSTHESFV-PFVKRL 602

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +  + G     DD    IG ++A  D LG P  + +  + V D+   ++ R
Sbjct: 603 GLKFRRAGISSKVDDSSSSIGKRYARNDELGTPFGITIDFQSVKDNTFTLRDR 655


>gi|171686512|ref|XP_001908197.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943217|emb|CAP68870.1| unnamed protein product [Podospora anserina S mat+]
          Length = 734

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 13/116 (11%)

Query: 316 SYGIGAMRVVAAVIESSH---------DGKGII-WPDSVAPFKISLINIKAHDQVCRDAC 365
           S+GIG  R++ +++E ++         + +G++ +P +VAP K+ ++ + ++     +  
Sbjct: 574 SFGIG--RILYSLMEHNYWTRASEGGDEARGVLSFPPAVAPTKVLIVPLSSNKDFTPE-V 630

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            K+  +L   G     DD    IG +++  D LG P  V V  + + D  V ++ R
Sbjct: 631 RKLSQKLRSAGVSSRIDDSSASIGKRYSRNDELGTPFGVTVDFQTLKDGTVTLRER 686



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            +PF    I   +R+E+ PR G++R REFLM +   F + PEG K
Sbjct: 309 QMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHF-VDPEGHK 352


>gi|85708652|ref|ZP_01039718.1| prolyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85690186|gb|EAQ30189.1| prolyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 514

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      ++  +G        S+G  + R++  V+ +  D  G+
Sbjct: 236 GKALQAGTSHYLGTSFASAAGIQYQDKEGTQQLCHTTSWGT-STRMIGGVVMTHGDDDGL 294

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGEQIGS 390
             P  +AP +I ++ +   K  D+V    CE++ A L+          V  D    +  +
Sbjct: 295 RVPPRIAPHQIIILPMLREKPEDEVVLAYCEEVRAALASQWSMGEPVRVLLDKTPGKAAA 354

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +       G P+ V VG + + + KV +  R
Sbjct: 355 KRWSWVRKGAPVIVEVGPRDMDEGKVAVLRR 385


>gi|328773234|gb|EGF83271.1| hypothetical protein BATDEDRAFT_18426 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 699

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ A++E S+      + + +  +P SVAP K +L+   +++       ++I
Sbjct: 546 SFGIG--RILYALLEHSYYVRESDEQRAVFKFPASVAPIK-ALVAPISNNAEFSPFIKEI 602

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            A L + G     DD    IG ++A  D LG P  + +  + V D  V ++ R T
Sbjct: 603 VASLRRSGVANKVDDSTSSIGRRYARNDELGTPFAITIDFQTVQDKTVTLRERDT 657


>gi|315048629|ref|XP_003173689.1| glycyl-tRNA synthetase 1 [Arthroderma gypseum CBS 118893]
 gi|311341656|gb|EFR00859.1| glycyl-tRNA synthetase 1 [Arthroderma gypseum CBS 118893]
          Length = 629

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + PEG K
Sbjct: 236 QSMPFASACIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGK 280


>gi|299134937|ref|ZP_07028128.1| seryl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298589914|gb|EFI50118.1| seryl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 486

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F   +  S 
Sbjct: 287 PTAEVPLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI 346

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             TPE SK+ + +M      +  RLGL    M   +G +G
Sbjct: 347 -TTPEESKNEHERMLSCAEEVLKRLGLHYRVMTLCTGDMG 385


>gi|50422167|ref|XP_459646.1| DEHA2E07722p [Debaryomyces hansenii CBS767]
 gi|49655314|emb|CAG87877.1| DEHA2E07722p [Debaryomyces hansenii]
          Length = 655

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%)

Query: 316 SYGIGAMRVVAAVIE-------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++ E          D   +  P  VAP K+ L+ + ++ ++ +   +KI
Sbjct: 503 SFGIG--RILYSIFEHQFWARPEDKDRTVLSLPPLVAPTKVLLVPLSSNAEL-QPIVKKI 559

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K       DD    IG ++A  D LG P  + +    V D  V ++ R +  +  
Sbjct: 560 SAFLRKEQVPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDESVTLRDRDSTKQVR 619

Query: 429 MSLEEVINYASHRFSNN 445
            SLE+++        NN
Sbjct: 620 GSLEDIVEAIKDIAYNN 636



 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +PF    I   FR+E+ PR G++R REFLM +   + + P+   HS
Sbjct: 241 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPDNKSHS 285


>gi|325293128|ref|YP_004278992.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060981|gb|ADY64672.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 667

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G +    + A +R     T   E++ P +    LW  SG +  Y + 
Sbjct: 259 QEEGPGVVFWHGKGWRMFQTLTAYMRRRLANTYQ-EVNAPQVLDKSLWETSGHWGWYQEN 317

Query: 93  MLRLA-----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           M  +            D + +     P +      IF+  +KSYR +P    +     R 
Sbjct: 318 MFAVKSAHAFTHPDDEDADQRVFALKPMNCPGHVQIFKHGLKSYREMPVRLAEFGNVHRY 377

Query: 142 ELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           E      G+MR R F   DA+ F  T E       ++    L ++   G   I ++  + 
Sbjct: 378 EASGALHGLMRVRGFTQDDAHVF-CTEEQMAAECLRINDLILSVYEDFGFSEIVVKLSTR 436

Query: 201 P---IGGD 205
           P   +G D
Sbjct: 437 PEKRVGSD 444


>gi|39936469|ref|NP_948745.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|73919820|sp|Q6N4D3|SYT_RHOPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39650325|emb|CAE28847.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG ++ Y + M       D A         P +      IF+  +
Sbjct: 293 EVNAPQILDKVLWETSGHWEWYRENMFAAQSAGDDAEDKRWFALKPMNCPGHVQIFKHGL 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 353 KSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF 394


>gi|14591389|ref|NP_143467.1| glycyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|11387128|sp|O59235|SYG_PYRHO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|3258043|dbj|BAA30726.1| 570aa long hypothetical glycyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 570

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           ++ KA +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   
Sbjct: 156 KDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMIRLREFTQA 215

Query: 159 DAYSFDLTPEGSKHS-YNKMFVSYLRIF----HRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +A  F   P  ++H  +N++    L+++        L  + + AE     G + + F   
Sbjct: 216 EAEIF-FNPNETEHPHFNEVKHEKLKLYPIENQLKELGEVEVTAEEAVKRGYVMNSFFAY 274

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDF 239
                  V   K  +D  IP +   F
Sbjct: 275 -----YMVMIKKILLDIGIPEDKIRF 295


>gi|323338670|gb|EGA79886.1| Grs1p [Saccharomyces cerevisiae Vin13]
          Length = 590

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S       + + ++ +P  VAP K+ L+ +  H  +     E +
Sbjct: 440 SFGIG--RIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTTE-V 496

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +  +   D  V ++ R +  +  
Sbjct: 497 AKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESXXDHSVTLRERDSTKQVR 556

Query: 429 MSLEEVI 435
            S+E+VI
Sbjct: 557 GSVEDVI 563


>gi|309808038|ref|ZP_07701957.1| putative threonine--tRNA ligase [Lactobacillus iners LactinV
           01V1-a]
 gi|308168721|gb|EFO70820.1| putative threonine--tRNA ligase [Lactobacillus iners LactinV
           01V1-a]
          Length = 377

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +   I +++   G   +  P L + D +  SG +  Y ++M    
Sbjct: 259 GLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDAYKTSGHWAHYREDMFPPM 318

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           D  D  M+   P +      I+  HI+SYR LP    ++ +  R
Sbjct: 319 DMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMMHR 362


>gi|302669952|ref|YP_003829912.1| threonyl-tRNA synthetase ThrS [Butyrivibrio proteoclasticus B316]
 gi|302394425|gb|ADL33330.1| threonyl-tRNA synthetase ThrS [Butyrivibrio proteoclasticus B316]
          Length = 602

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+S P + +  LW +SG +D Y ++ + +   +D      P +      +++S  
Sbjct: 255 REGYQEISTPIMLTKALWEKSGHWDHY-RDNMYVTSVDDMDYAIKPMNCPGGMLVYKSKP 313

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            SYR  P    ++ +  R E      G+MR+R F   DA+ F
Sbjct: 314 HSYREFPIRCGELGIVHRAEKSGTLHGLMRARCFTQDDAHIF 355



 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 12/144 (8%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG 337
           +G  +  GT    + LP      + G DGK+H  + +     G++     ++   + GK 
Sbjct: 441 IGRTWQCGTIQLDFQLPQRFDLEYIGEDGKEHRPIMLHRVVFGSIDRFMGILIEHYAGKF 500

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            +W   ++P ++ ++ +   D+   D  ++I A+L + G     DD  E++G +   A +
Sbjct: 501 PVW---LSPVQVKVLPVS--DKYL-DYAKEIMAKLYEEGIRAELDDRDEKLGFKIREARM 554

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHR 421
              P  +IVG K   +  V ++ R
Sbjct: 555 QKVPYMIIVGEKEKDNRLVSVRQR 578


>gi|192292254|ref|YP_001992859.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192286003|gb|ACF02384.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 687

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG ++ Y + M       D A         P +      IF+  +
Sbjct: 322 EVNAPQILDKVLWETSGHWEWYRENMFAAQSAGDDAEDKRWFALKPMNCPGHVQIFKHGL 381

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 382 KSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF 423


>gi|255730579|ref|XP_002550214.1| glycyl-tRNA synthetase 1 [Candida tropicalis MYA-3404]
 gi|240132171|gb|EER31729.1| glycyl-tRNA synthetase 1 [Candida tropicalis MYA-3404]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++ E           +G++  P  VAP K+ L+ +  + ++ +   +K+
Sbjct: 501 SFGIG--RILYSIFEHQFWCRPDDADRGVLSLPPIVAPTKVLLVPLSNNPEL-QPVVKKV 557

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  + +    V D  V ++ R +  +  
Sbjct: 558 SQALRKEKIPFKIDDSGASIGKRYARNDELGTPFGITIDFDSVKDDSVTLRERDSTKQVR 617

Query: 429 MSLEEVI 435
            S+EE++
Sbjct: 618 GSIEEIV 624


>gi|171691298|ref|XP_001910574.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945597|emb|CAP71710.1| unnamed protein product [Podospora anserina S mat+]
          Length = 551

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 14/192 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           ++ + F    QE  + AE+  +   + +G        +Y W        + +     E  
Sbjct: 50  KKGENFSAWYQEVVQKAEMVEYYTEI-SGFFVMRPNTMYIW--------NTIRKWFNERI 100

Query: 62  NRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTD 116
              G  E + P  L S  L  E    + +  E+  +    +K     +   PT E VM  
Sbjct: 101 EAAGVEECNFPMFLSSTSLQKEKDHVEGFAPELAWVTKAGEKDLEVPVAVRPTSEAVMYP 160

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            +   I+S+R+LP    Q     R E +     +R+REF+ ++ ++  ++ E +     +
Sbjct: 161 YYSKWIRSHRDLPLKLNQWVSVVRWEAKQTVPFLRAREFMWQEGHTAFVSEEQAGKEVLE 220

Query: 177 MFVSYLRIFHRL 188
           +   Y  I+ +L
Sbjct: 221 ILELYAGIYEQL 232


>gi|147835149|emb|CAN65674.1| hypothetical protein VITISV_002009 [Vitis vinifera]
          Length = 1260

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +  ADLW  SG  D Y + M       D+     P +      I++  + SYR+ 
Sbjct: 333 LYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRKLHSYRDF 392

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDL 165
           P    ++   +  EL     G+ R R F   DA+ F L
Sbjct: 393 PIRVAELGTVYXYELSGSLHGLFRVRGFTQDDAHIFCL 430


>gi|320590421|gb|EFX02864.1| glycyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 665

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 19/119 (15%)

Query: 316 SYGIGAMRVVAAVIESSH---------DGKGII-WPDSVAPFKISLINIKAHDQ---VCR 362
           S+GIG  R++ +++E ++         + +G+I +  +VAP K+ ++ I + D+   V R
Sbjct: 506 SFGIG--RILYSLLEHNYWSRGAEGGDEARGVISFSPAVAPTKVLIVPISSKDEFKPVVR 563

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D  +K    L  +G     DD    IG +++  D LG P  + +  + + D  V ++ R
Sbjct: 564 DLSQK----LRSLGLASRVDDSTASIGKRYSRNDELGTPFGITIDFQTIKDGSVTLRER 618



 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +++PF    I   +R+E+ PR G++R REFLM +   F + P+G K  +
Sbjct: 240 QSMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHF-VDPDGGKKHH 287


>gi|330443451|ref|NP_009679.2| Grs1p [Saccharomyces cerevisiae S288c]
 gi|329136729|tpg|DAA07239.2| TPA: Grs1p [Saccharomyces cerevisiae S288c]
          Length = 667

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S       + + ++ +P  VAP K+ L+ +  H  +     E +
Sbjct: 510 SFGIG--RIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTTE-V 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +  +   D  V ++ R +  +  
Sbjct: 567 AKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVR 626

Query: 429 MSLEEVI 435
            S+E VI
Sbjct: 627 GSVENVI 633


>gi|328351896|emb|CCA38295.1| threonyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI  +S G   +LP G +  + +   ++ +Q + G  E+  P +    LW  SG +D+Y 
Sbjct: 50  MIDSNSPGSVFFLPHGTRLFNKLVQFMKIQQKKHGFDEVITPLIYKKKLWEISGHWDNYK 109

Query: 91  KEMLRLAD--------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           ++M R+          ++++     P +      I++   +S   LP  +       R+E
Sbjct: 110 EDMYRVEGNEVSHGDAKDEETFGLKPMNCPGHCLIYKRFDRSINELPIRYSDWSSLHRNE 169

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
                 G+ R R F   D + F
Sbjct: 170 ASGALTGLTRVRRFHQDDGHIF 191


>gi|222086050|ref|YP_002544582.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
 gi|254783503|sp|B9JFG4|SYT_AGRRK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221723498|gb|ACM26654.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
          Length = 662

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+  +
Sbjct: 293 EVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKHGL 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+    
Sbjct: 353 KSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDLI 411

Query: 182 LRIFHRLGLKSIPMRAESGP 201
           L ++   G + + ++  + P
Sbjct: 412 LSVYEDFGFEEVVVKLSTRP 431


>gi|15679834|ref|NP_276952.1| glycyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334352|sp|O27874|SYG_METTH RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|2622981|gb|AAB86312.1| glycyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 565

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH-SYN 175
           F+  ++ +RN LPF   Q+   +R+E+ PR GV+R REF   +A  F + PE   H  + 
Sbjct: 173 FKRLLRFFRNRLPFGVVQLGKSYRNEISPRQGVIRLREFTQAEAEIF-VDPEHKTHPDFE 231

Query: 176 KMFVSYLRIF 185
           ++    LR++
Sbjct: 232 EVKEDILRLY 241



 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESS--HDGK 336
           E G     G    LP   +F+  +    G+  Y  +     G  R++  ++  S   DG+
Sbjct: 399 EEGRFILEGEFEILPDDVSFEDVEEVVTGRKVYPHVIEPSFGIDRIIYTLLLHSLVDDGE 458

Query: 337 GIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              +  P  VAP +++++ +   +++   A E I   L + G    +D  G  IG ++A 
Sbjct: 459 RTYFRLPPHVAPVEVTVLPLVNREEMVMTALE-IERNLRRSGFIAEFDSSG-TIGRRYAR 516

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           AD +G P  V V  + + D  V +++R    +  + +EE++
Sbjct: 517 ADEIGVPFAVTVDHETLEDGTVTLRNRDDCSQVRVKIEELV 557


>gi|86749859|ref|YP_486355.1| seryl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|123004117|sp|Q2IWG6|SYS_RHOP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|86572887|gb|ABD07444.1| seryl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
          Length = 476

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F   +  S 
Sbjct: 279 PTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI 338

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             TPE SK  + +M      +  RLGL    M   +G +G
Sbjct: 339 -TTPEQSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMG 377


>gi|330833959|ref|YP_004408687.1| glycyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566098|gb|AEB94203.1| glycyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 571

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++ P+++++  +   +++   A +KIY  L K   +V +DD G  IG ++A  D +G 
Sbjct: 459 PKNIVPYQVAVFPLLDREELTAKA-KKIYNML-KDNFEVLYDDSG-SIGKRYARVDEIGV 515

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P  + V  + +SD  V ++ R T  +  +  +++  +    FS+
Sbjct: 516 PYAITVDPQSLSDDTVTVRDRDTWEQVRIKTQDLNTFIQKLFSD 559


>gi|254570979|ref|XP_002492599.1| Cytoplasmic and mitochondrial glycyl-tRNA synthase [Pichia pastoris
           GS115]
 gi|238032397|emb|CAY70420.1| Cytoplasmic and mitochondrial glycyl-tRNA synthase [Pichia pastoris
           GS115]
 gi|328353394|emb|CCA39792.1| glycyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 653

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
            +PF    I   FR+E+ PR G++R REFLM +   F + PE   HS
Sbjct: 238 KMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPEDKSHS 283


>gi|254568978|ref|XP_002491599.1| Mitochondrial threonyl-tRNA synthetase [Pichia pastoris GS115]
 gi|238031396|emb|CAY69319.1| Mitochondrial threonyl-tRNA synthetase [Pichia pastoris GS115]
          Length = 461

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI  +S G   +LP G +  + +   ++ +Q + G  E+  P +    LW  SG +D+Y 
Sbjct: 57  MIDSNSPGSVFFLPHGTRLFNKLVQFMKIQQKKHGFDEVITPLIYKKKLWEISGHWDNYK 116

Query: 91  KEMLRLAD--------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           ++M R+          ++++     P +      I++   +S   LP  +       R+E
Sbjct: 117 EDMYRVEGNEVSHGDAKDEETFGLKPMNCPGHCLIYKRFDRSINELPIRYSDWSSLHRNE 176

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
                 G+ R R F   D + F
Sbjct: 177 ASGALTGLTRVRRFHQDDGHIF 198


>gi|156120825|ref|NP_001095559.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Bos taurus]
 gi|189083595|sp|A6QNM8|SYTC2_BOVIN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|151556799|gb|AAI48907.1| TARSL2 protein [Bos taurus]
 gi|296475416|gb|DAA17531.1| threonyl-tRNA synthetase-like 2 [Bos taurus]
          Length = 724

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 2/132 (1%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G    + +   IRE+ ++    E+  P + S  LW  SG +  Y + 
Sbjct: 413 HDLSPGSCFFLPRGACIYNTLIDFIREQHHQRNFTEVLSPNMYSCKLWEASGHWQHYSEN 472

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M    D +       P +      +F    +S+R +P       +  R+E      G+  
Sbjct: 473 MFTF-DIDKDTFALKPMNCPGHCLMFAHRPRSWREMPIRLADFGVLHRNEPSGALSGLTC 531

Query: 152 SREFLMKDAYSF 163
            R F   DA+ F
Sbjct: 532 VRRFQQDDAHIF 543


>gi|124006194|ref|ZP_01691029.1| glycyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123988118|gb|EAY27776.1| glycyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 500

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 24/227 (10%)

Query: 74  LQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           +   D W E  +++  +  E+  +AD ++K  +   T + +  +       S + +PF  
Sbjct: 161 ISGTDNWTEVRQFNLMFSTEIGSVADESNKIYLRPETAQGIFVNFMNVQKTSRQQIPFGI 220

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
            QI   FR+E+  R  V R REF   +   F + P      Y+    + ++    +GL +
Sbjct: 221 AQIGKAFRNEIVARQFVFRMREFEQMEMQYF-VRPGEEMQWYDHWKETRMKFLQAIGLPA 279

Query: 193 IPMR-------AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF------ 239
             +R       A       D+  EF +    G  ++       DF + S++ +F      
Sbjct: 280 EKLRYHDHIKLAHYANAAADIEFEFPI----GFKELEGIHSRTDFDL-SKHAEFSKTKIQ 334

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
             DD I      ++   PY   + +  ++LF ++  N   +A GI+ 
Sbjct: 335 YVDDTIEDKD--KRKYIPYVVETSIGLDRLFLAVLSNSLTTAEGIDA 379


>gi|322709352|gb|EFZ00928.1| threonyl-tRNA synthetase, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 759

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 39/167 (23%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G +  + +  ++RE+    G  E+  P +    LW  SG +D Y ++M R
Sbjct: 318 SPGSPFFLPHGTRIFNAIQTMLREQYWMRGYDEVHSPLMYDVQLWKTSGHWDHYQEDMFR 377

Query: 96  LADRN------DKAMIYGP--------------THEEVM------------------TDI 117
           +  ++      D  +  GP               + EV                     +
Sbjct: 378 VPLKHTHGAAPDAPVASGPDAAKDADKPAGKDGENAEVAKLEQERLFALKPMNCPGHALM 437

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           F S  +SYR+LP+      +  R+E      G+ R R+F   DA+ F
Sbjct: 438 FASEERSYRSLPWRVADFSVLHRNEASGALTGLTRVRKFQQDDAHIF 484


>gi|150399970|ref|YP_001323737.1| glycyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|166227937|sp|A6URK3|SYG_METVS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|150012673|gb|ABR55125.1| glycyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 574

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 14/134 (10%)

Query: 316 SYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPFKIS---LINIKAHDQVCRDACEKI 368
           SYGI   R+   VIE +     D   + + ++V+P K+    L+N +  D++     E +
Sbjct: 448 SYGID--RITYCVIEHAFKEEDDRTLLAFVNTVSPVKVGVFPLVNKEGMDEIA----ENL 501

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +  K G    +DD G  IG ++   D +G P  V V  + + D+ V I+ R +  +  
Sbjct: 502 KNKFRKNGIIAEYDDSG-AIGRRYMRMDEIGTPFCVTVDGETLKDNTVTIRERDSREQFR 560

Query: 429 MSLEEVINYASHRF 442
           + L+ V++Y   + 
Sbjct: 561 IPLDGVVDYIKEKL 574


>gi|145506787|ref|XP_001439354.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406538|emb|CAK71957.1| unnamed protein product [Paramecium tetraurelia]
          Length = 640

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKD-AYSFDLTPEGSKHSYNK 176
           +PF   QI L FR+E+ PR G++R REF M +  Y  D T + +   +NK
Sbjct: 228 VPFGAAQIGLGFRNEIAPRGGLLRCREFQMAEIEYFVDPTEKSTFKKFNK 277



 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 316 SYGIGAMRVVAAVIESSHDGKG------IIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           ++GIG  R++ A+IE S + +         +   VAP K S++++   ++      +++ 
Sbjct: 488 AFGIG--RILQAIIEHSFNQRDDPQKTFFKFSPRVAPVKCSILSVVQSEEF-DVVIQELT 544

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           + L K+G     D+ G  +G ++A  D +G P  + V  + ++   V ++ 
Sbjct: 545 SSLKKLGISCKTDNAGVALGKKYARTDEIGIPFAITVDKETLAAQSVTLRE 595


>gi|39935910|ref|NP_948186.1| seryl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|192291558|ref|YP_001992163.1| seryl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|67461786|sp|Q6N5X5|SYS_RHOPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229890230|sp|B3Q6H9|SYS_RHOPT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|39649764|emb|CAE28286.1| seryl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|192285307|gb|ACF01688.1| seryl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 434

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F   +  S 
Sbjct: 236 PTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI 295

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             TPE SK  + +M      +  RLGL    M   +G +G
Sbjct: 296 -TTPEQSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMG 334


>gi|146413645|ref|XP_001482793.1| hypothetical protein PGUG_04748 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 379

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G   +LP G + ++ +   ++ +Q R G  E+  P +    LW  SG +D+Y  +M +
Sbjct: 44  TPGSIFFLPHGTRIMNKLIQFMKHQQMRYGFEEVITPLIYKNQLWKTSGHWDNYRDDMFK 103

Query: 96  LA------DRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +         + +   YG  P +      IF    +SY   P          R+E     
Sbjct: 104 VTGNVVHEHEDPQLHEYGLKPMNCPGHCVIFSKFERSYNEFPIRLSDFSSLHRNEASGAL 163

Query: 148 -GVMRSREFLMKDAY---SFDLTPEGSKHSYNKMFVSY 181
            G+ R R F   D +    FD   +   ++ N +  SY
Sbjct: 164 SGLTRVRRFHQDDGHIFCEFDQVEDEISNTVNLILESY 201


>gi|21227490|ref|NP_633412.1| glycyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|20905865|gb|AAM31084.1| Glycyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS--- 173
           F+   + YR+ LPF   QI   +R+E+ PR GV+R REF   +   F + P   KHS   
Sbjct: 200 FQRLSRFYRDKLPFGAVQIGKSYRNEIAPRQGVIRLREFTQAECELF-VDPRNKKHSNFE 258

Query: 174 --YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               K  V Y +   + G + I M        G ++HE +
Sbjct: 259 RFAEKELVLYSQAAQQTG-EPIRMTVREAVETGVIAHEVL 297


>gi|302924192|ref|XP_003053833.1| hypothetical protein NECHADRAFT_31483 [Nectria haematococca mpVI
           77-13-4]
 gi|256734774|gb|EEU48120.1| hypothetical protein NECHADRAFT_31483 [Nectria haematococca mpVI
           77-13-4]
          Length = 485

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 25/154 (16%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM- 93
           +S G   +LP G +  + +   +R++  R G  E+  PT+    LW +SG  ++Y  +M 
Sbjct: 58  YSPGSPIFLPNGARIFNRLVDFLRKQYVRYGFEEVITPTIYKKSLWAKSGHLENYADDMY 117

Query: 94  -----------------------LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                                  L+  D  +      P +      IF S   SYR+LP 
Sbjct: 118 AVRGNTEQPPAEHDGCCGSHPENLKPEDEEEGDYGLKPMNCPGHCLIFASKRHSYRDLPI 177

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            +       R+E+     G+ R R F   D + F
Sbjct: 178 RYADFSPLHRNEISGALSGLTRVRRFHQDDGHIF 211


>gi|294495367|ref|YP_003541860.1| glycyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666366|gb|ADE36215.1| glycyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 585

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 118 FRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           F+   + YR  LPF   QI   +R+E+ PR GV+R REF   +A  F + P+  KH
Sbjct: 170 FQRLARYYREKLPFGVTQIGKSYRNEISPRQGVIRLREFTQAEAEIF-IHPQEKKH 224


>gi|221060322|ref|XP_002260806.1| glycyl-tRNA synthetase [Plasmodium knowlesi strain H]
 gi|193810880|emb|CAQ42778.1| glycyl-tRNA synthetase, putative [Plasmodium knowlesi strain H]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +PF   QI L FR+E+ PR G++R REF M +   F + PE   H    +F
Sbjct: 405 MPFAGAQIGLGFRNEISPRNGLLRVREFEMAEIEYF-VNPEKKCHEKYHLF 454


>gi|220915162|ref|YP_002490466.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953016|gb|ACL63400.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 508

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ ++  PT E ++ + F   ++SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 115 EEPLVVRPTSETIIGESFARWVQSYRDLPLLINQWANVVRWEMRTRM-FLRTAEFLWQEG 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLR 183
           ++   T + +     +M   Y R
Sbjct: 174 HTAHATEQEAIDETMQMLGIYAR 196


>gi|85076319|ref|XP_955907.1| hypothetical protein NCU04449 [Neurospora crassa OR74A]
 gi|28916937|gb|EAA26671.1| hypothetical protein NCU04449 [Neurospora crassa OR74A]
 gi|40882172|emb|CAF05998.1| probable proline-tRNA ligase [Neurospora crassa]
          Length = 558

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 10/176 (5%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADL 79
            +++L+  +I  +++  G +   P      + +    +E  +  G  E + P  L    L
Sbjct: 62  QEVVLKAELIEYYTEISGFFIMRPATMYIWNVIRKWFQEHIDELGVEETNFPMFLSQKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDI---FRSHIKSYRNLPFTF 132
             E    + +  E+  +    DK     +   PT E VM      +   I+S+R+LPF  
Sbjct: 122 EKEKEHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPWKPDYAKWIRSHRDLPFRL 181

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
            Q     R E +     +R+REF+ ++ ++  LT + +     ++   Y  ++ +L
Sbjct: 182 NQWNSVVRWEAKQTTPFLRAREFMWQEGHTAHLTEQAAGEEVLQILEFYAGVYEQL 237


>gi|213028507|ref|ZP_03342954.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 73

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 36/62 (58%)

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 5   GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 64

Query: 436 NY 437
           +Y
Sbjct: 65  DY 66


>gi|156102126|ref|XP_001616756.1| glycine-tRNA ligase [Plasmodium vivax SaI-1]
 gi|148805630|gb|EDL47029.1| glycine-tRNA ligase, putative [Plasmodium vivax]
          Length = 842

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +PF   QI L FR+E+ PR G++R REF M +   F + PE   H    +F
Sbjct: 417 MPFAGAQIGLGFRNEISPRNGLLRVREFEMAEIEYF-VNPERKCHEKYPLF 466


>gi|260821670|ref|XP_002606155.1| hypothetical protein BRAFLDRAFT_126484 [Branchiostoma floridae]
 gi|229291494|gb|EEN62165.1| hypothetical protein BRAFLDRAFT_126484 [Branchiostoma floridae]
          Length = 682

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
            LPF   QI + FR+E+ PR G++R REF M +   F L P+   H
Sbjct: 264 KLPFAAAQIGVSFRNEISPRSGLIRCREFPMAEIEHF-LDPDEKDH 308


>gi|325193707|emb|CCA27955.1| prolyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 697

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M   F++ I+S+R+LP    Q     R E +     +R+REFL ++ ++   T 
Sbjct: 301 PTSETIMYPAFKNWIRSHRDLPLKLNQWNNVVRWEFKNPTPFIRTREFLWQEGHTAHATK 360

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             +    +++   Y   +    L ++PM
Sbjct: 361 AEADEQVHQILDFYAAAYEE--LLAVPM 386


>gi|212544894|ref|XP_002152601.1| glycyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
 gi|210065570|gb|EEA19664.1| glycyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
          Length = 552

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK--HSYNKM 177
            +PF    +   FR+E+ PR G++R REFLM +   F + PEG K  H ++++
Sbjct: 149 TMPFASASVGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHHRFDEI 200



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KI   L ++G     DD G  IG ++A  D LG PL + +    V D  + ++ R +  +
Sbjct: 454 KISQNLRRLGISCRVDDSGASIGKRYARNDELGIPLGITIDFDTVKDDSITLRERDSTRQ 513

Query: 427 EDMSLEEVI 435
              S++E+I
Sbjct: 514 VRASIDEII 522


>gi|190348228|gb|EDK40650.2| hypothetical protein PGUG_04748 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 379

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           + G   +LP G + ++ +   ++ +Q R G  E+  P +    LW  SG +D+Y  +M +
Sbjct: 44  TPGSIFFLPHGTRIMNKLIQFMKHQQMRYGFEEVITPLIYKNQLWKTSGHWDNYRDDMFK 103

Query: 96  LA------DRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +         + +   YG  P +      IF    +SY   P          R+E     
Sbjct: 104 VTGNVVHEHEDPQLHEYGLKPMNCPGHCVIFSKFERSYNEFPIRLSDFSSLHRNEASGAL 163

Query: 148 -GVMRSREFLMKDAY---SFDLTPEGSKHSYNKMFVSY 181
            G+ R R F   D +    FD   +   ++ N +  SY
Sbjct: 164 SGLTRVRRFHQDDGHIFCEFDQVEDEISNTVNLILESY 201


>gi|85084305|ref|XP_957291.1| glycyl-tRNA synthetase 1 [Neurospora crassa OR74A]
 gi|28918380|gb|EAA28055.1| glycyl-tRNA synthetase 1 [Neurospora crassa OR74A]
          Length = 663

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +++E ++      + +G+I +P +VAP K+ ++ I +  +       ++
Sbjct: 505 SFGIG--RILYSLLEHNYWVREGDEARGVISFPPAVAPVKVLIVPISSKAEFA-PHVRRL 561

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +L  VG     DD    IG ++A  D LG P  + +  + + D    ++ R
Sbjct: 562 SQKLRSVGISSRVDDSSASIGRRYARNDELGTPFGLTIDFQTLQDGTFTLRER 614



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           N+PF    I   +R+E+ PR G++R REFLM +   F + P G K
Sbjct: 240 NMPFASASIGKSYRNEIAPRGGLLRVREFLMAEIEHF-VDPAGHK 283


>gi|289450135|ref|YP_003475729.1| glycine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184682|gb|ADC91107.1| glycine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 462

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 16/135 (11%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPD---------SVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA RV  A + +++D + +   D         ++AP KI+++ + A      +A   +Y
Sbjct: 333 LGADRVALAFLCAAYDEETLAGGDIRTVLRFHPALAPVKIAVLPLSAK---LTEAARPLY 389

Query: 370 ARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             LSK+G C++   D  + IG ++   D +G P  V      V+D+ V ++ R +  +  
Sbjct: 390 EMLSKIGNCEL---DDRQGIGKRYRRQDEIGTPYCVTYDFDSVNDNCVTVRERDSMEQVR 446

Query: 429 MSLEEVINYASHRFS 443
           + + E+  Y + +F+
Sbjct: 447 LPIAELTAYFADKFT 461


>gi|145518031|ref|XP_001444893.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412326|emb|CAK77496.1| unnamed protein product [Paramecium tetraurelia]
          Length = 640

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKD-AYSFDLTPEGSKHSYNK 176
           +PF   QI L FR+E+ PR G++R REF M +  Y  D T + +   +NK
Sbjct: 228 VPFGAAQIGLGFRNEIAPRGGLLRCREFQMAEIEYFVDPTEKSTFKKFNK 277



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 316 SYGIGAMRVVAAVIESSHDGKG------IIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           ++GIG  R++ A+IE S + +         +   VAP K S++++   ++   +   ++ 
Sbjct: 488 AFGIG--RILQAIIEHSFNQRDDPQKTFFKFSPRVAPVKCSILSVVQSEEF-DNVIFELT 544

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           + L K+G     D+ G  +G ++A  D +G P  + V  + ++   V ++   T  +  +
Sbjct: 545 SSLKKLGISCKTDNAGVALGKKYARTDEIGIPFAITVDKETLTAQSVTLREIETTKQVRV 604

Query: 430 SLEEV 434
            + EV
Sbjct: 605 PIAEV 609


>gi|304391793|ref|ZP_07373735.1| seryl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303296022|gb|EFL90380.1| seryl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E++ P L  +++    G    +  ++ + +D  D+ +I  PT E  +T++ R  I   + 
Sbjct: 194 EVAPPVLVRSEVLFGVGNLPKFEDDLFKTSD--DRYLI--PTSEAPLTNLVRESILDEKT 249

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP  +  +   FR E     R   G++R  +F   +  S   TP+ S     +M      
Sbjct: 250 LPRRYTALTNCFRAEAGSAGRDTRGMLRQHQFAKCEMVSI-TTPDNSDAEQQRMVGCAEE 308

Query: 184 IFHRLGLKSIPMRAESGPIG 203
           +  RLGL    ++  +G +G
Sbjct: 309 VLKRLGLHYRVVKLCTGDLG 328


>gi|21592545|gb|AAM64494.1| glycyl tRNA synthetase, putative [Arabidopsis thaliana]
          Length = 690

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 275 KKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPENKSH 320


>gi|305663857|ref|YP_003860145.1| threonyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378426|gb|ADM28265.1| threonyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 617

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 138/358 (38%), Gaps = 53/358 (14%)

Query: 89  YGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +G+ M  +   ND+ ++ +   +++    I +  + SYR+LP   ++I   +R E R   
Sbjct: 266 FGERMYEVRIDNDRYILRFAACYQQF--SILKDWVLSYRDLPMGMFEIADSYRYEQRGEL 323

Query: 148 GV-MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            +  R R F M D +      E +K           RI   +  K +    E+  IG + 
Sbjct: 324 VLGFRLRRFHMPDLHILTKDLEEAK-----------RIAMIVRNKIV---EEARKIGREY 369

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-----NSIVEQWTAPYAATSD 261
              + +           ++DF        NT+F+ I+ L       ++     P      
Sbjct: 370 QAIYNI-----------TEDFF-------NTNFEYIVELVRAEGKPVLVVLYPPGLYYWV 411

Query: 262 VHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD---HYVQMGSY 317
           ++ E +  D L   + ++   I+VG+   FG KY         G +      H   +GS 
Sbjct: 412 INVEYIIIDELKRPREIATWQIDVGNAKRFGIKY-----VDENGVERHPIIIHTAILGSV 466

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
                 V   V  S  + K    P  ++P ++ +I I            K    LS+ G 
Sbjct: 467 ERYIYMVFDTVARSESENKPPTLPLWLSPIQVRVIPISKETLTYAINVAK---ELSRHGI 523

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            V  DD  E +G +   A +   P  +++G + +    + ++ R  GI+  M ++E I
Sbjct: 524 RVDIDDRDESLGKKIRDAGIEWIPYVIVIGEREMKTGTINVRIRKDGIQRVMHIDEFI 581


>gi|156846538|ref|XP_001646156.1| hypothetical protein Kpol_1039p49 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116829|gb|EDO18298.1| hypothetical protein Kpol_1039p49 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 663

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S+        + ++ +P  VAP K+ L+ +  H  +      ++
Sbjct: 510 SFGIG--RIIYSVFEHSYWNRPEDTARSVLSFPPLVAPTKVLLVPLSNHKDLA-PITSQV 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +      D  V ++ R +  +  
Sbjct: 567 SKILRKEKIPFKVDDSGVSIGKRYARNDELGTPFGVTIDFDSTKDGSVTLRERDSTKQVR 626

Query: 429 MSLEEVINYASHRFSNN 445
            S+E+VI        NN
Sbjct: 627 GSVEDVIKAIRDITYNN 643



 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           PF    I   FR+E+ PR G++R REFLM +   F L PE   H
Sbjct: 249 PFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-LDPEDKSH 291


>gi|77554944|gb|ABA97740.1| Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 489

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F   I+S+R+LP    Q     R E       +RSREFL ++ ++   T 
Sbjct: 133 PTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 192

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     ++   Y RI+   
Sbjct: 193 EEADEEVLQILELYRRIYEEF 213


>gi|299135303|ref|ZP_07028494.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298590280|gb|EFI50484.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 681

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 19/142 (13%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI--EMSVPTLQSADLWVESGRYD 87
           G++  H+KG   W            AII   + R  A   E++ P +    LW  SG ++
Sbjct: 287 GVVFWHAKG---WTLF--------QAIIAYMRRRLAADYDEVNAPQMLDKSLWETSGHWE 335

Query: 88  SYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            Y + M       D+A         P +      IF+  +KSYR LP    +  +  R E
Sbjct: 336 WYRENMFAAQSAGDEAEDKRWFAIKPMNCPGHVLIFKHGLKSYRELPIRLAEFGVVHRYE 395

Query: 143 LRPRF-GVMRSREFLMKDAYSF 163
                 G+MR R F   DA+ F
Sbjct: 396 PSGAMHGLMRVRGFTQDDAHIF 417


>gi|326802560|ref|YP_004320379.1| seryl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326553324|gb|ADZ81709.1| seryl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGI 338
           R +EV  +  F T  S  + A FKG DGK H    +    +   R+VA ++E +   +GI
Sbjct: 348 RWLEVSSVSNFETFQSNRLKARFKGQDGKMHLAHTLNGSALALPRIVACILEENQTDQGI 407

Query: 339 IWPDSVAPF 347
             P  + P+
Sbjct: 408 KVPSVLVPY 416


>gi|219116973|ref|XP_002179281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409172|gb|EEC49104.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 702

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
            +PF   QI L FR+E+ PR G++R REF M +   F + P+   H
Sbjct: 266 KMPFAAAQIGLGFRNEIAPRSGLLRVREFCMGEIEHF-VNPKDKSH 310


>gi|169856615|ref|XP_001834964.1| glycine-tRNA ligase [Coprinopsis cinerea okayama7#130]
 gi|116503951|gb|EAU86846.1| glycine-tRNA ligase [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 316 SYGIGAMRVVAAVIESSHDGK------GII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+G+G  R++  ++E S   +      G++  P  VAP K+ ++ + A ++      ++I
Sbjct: 500 SFGLG--RILYCLLEHSFWAREQDIERGVLSLPPLVAPTKVLIVPLSAREEF-DPLVQEI 556

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L K G     DD    IG ++A  D LG P  + +    V +  V I+ R T  +  
Sbjct: 557 TAKLRKAGVFSRVDDSNTSIGKRYARNDELGTPYGLTIDFASVQNRTVTIRERDTMDQRI 616

Query: 429 MSLEEVINYASHRFSNN 445
             ++EV+   +   + N
Sbjct: 617 GKIDEVVATVTDLVNGN 633


>gi|329724725|gb|EGG61231.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 41/75 (54%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D +  +I  Q   AD L     V++G + + ++++ +K+ ++G  
Sbjct: 347 KLINDLRRNGIKVDKDYLNRKIKGQMKQADRLNAKYTVVIGDQELENNEIGVKNMISGES 406

Query: 427 EDMSLEEVINYASHR 441
           E++ L+E++NY   R
Sbjct: 407 ENVQLDELVNYFKSR 421


>gi|320167783|gb|EFW44682.1| glycyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 716

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 103 AMIYGPTHEEVMTDIFRSHIK----SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           ++I G    E    IF +  K    +   LPF   QI   FR+E+ PR G++R REF M 
Sbjct: 235 SLIKGYLRPETAQGIFVNFRKLLDFNNNKLPFAAAQIGSSFRNEISPRAGLLRVREFTMA 294

Query: 159 DAYSFDLTPEGSKH 172
           +   F + PE   H
Sbjct: 295 EIEHF-VHPEKKDH 307


>gi|303285936|ref|XP_003062258.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456669|gb|EEH53970.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 828

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F + I+S+R+LP    Q     R E +     +RSREFL ++ ++     
Sbjct: 446 PTSETVMYPQFANWIRSHRDLPLKLNQWCNVVRWEFKHPTPFIRSREFLWQEGHTAFTNK 505

Query: 168 EGSKHSYNKMFVSYLRIFHR-LGLKSIP-MRAESGPIGGDL 206
           + +      +   Y R++   L +  IP +++E     G L
Sbjct: 506 KDADAEVRHILELYRRVYEELLAVPVIPGVKSEKEKFAGGL 546


>gi|297851412|ref|XP_002893587.1| glycyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata]
 gi|297339429|gb|EFH69846.1| glycyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata]
          Length = 730

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 315 KKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPENKSH 360


>gi|91793103|ref|YP_562754.1| seryl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123356823|sp|Q12NE5|SYS_SHEDO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|91715105|gb|ABE55031.1| seryl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 7/145 (4%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  E  VP L + D  + +G+   +G+++   + A    + +   PT E  +T++ R  I
Sbjct: 189 GYTETYVPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDTI 248

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
               +LP  F      FR E     R   G++R  +F   +     + PE S  +  ++ 
Sbjct: 249 VEVSDLPLKFTAQTSCFRSEAGSYGRDTRGLIRQHQFEKVELVQI-VKPEDSMQALEELT 307

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIG 203
           +   ++   LGL    M   +G +G
Sbjct: 308 LHAEKVLQLLGLPYRTMLLCTGDMG 332


>gi|311745437|ref|ZP_07719222.1| glycine--tRNA ligase [Algoriphagus sp. PR1]
 gi|126577987|gb|EAZ82207.1| glycine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 488

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++AP K +++ I   D +   A E +   L K   ++ +++    IG ++A  DL+G P 
Sbjct: 383 AIAPVKAAILPITKKDGLPDKAKEIV--DLLKYDFNIIYEEAA-SIGKRYARQDLIGTPF 439

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            + V  + + D+ V I+HR T  +E + + E+
Sbjct: 440 CIAVDHQTLEDNTVTIRHRDTTEQERVPISEL 471


>gi|110740563|dbj|BAE98387.1| glycyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 519

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 275 KKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPENKSH 320


>gi|34596188|gb|AAQ76784.1| bifunctional aminoacyl-tRNA synthetase [Herdmania curvata]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS-FDLT 166
           PT E VM   +   ++S+R+LP  + Q     R E +     +R+REFL ++ +S F   
Sbjct: 100 PTSETVMYPAYAKWVQSHRDLPLRYNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATK 159

Query: 167 PEGSKHS------YNKMFVSYLRI 184
           PE  K        Y +++  YL I
Sbjct: 160 PEAEKEVLQILELYAQVYEDYLAI 183


>gi|27468230|ref|NP_764867.1| histidyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57867126|ref|YP_188769.1| histidyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811035|ref|ZP_04825508.1| histidyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875945|ref|ZP_06284812.1| histidine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|293366413|ref|ZP_06613091.1| histidine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|32130102|sp|Q8CS98|SYH_STAES RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71153564|sp|Q5HNS1|SYH_STAEQ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|27315776|gb|AAO04911.1|AE016748_145 histidyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637784|gb|AAW54572.1| histidyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805453|gb|EES58110.1| histidyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294970|gb|EFA87497.1| histidine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|291319447|gb|EFE59815.1| histidine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735204|gb|EGG71496.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737401|gb|EGG73655.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 41/75 (54%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D +  +I  Q   AD L     V++G + + ++++ +K+ ++G  
Sbjct: 347 KLINDLRRNGIKVDKDYLNRKIKGQMKQADRLNAKYTVVIGDQELENNEIGVKNMISGES 406

Query: 427 EDMSLEEVINYASHR 441
           E++ L+E++NY   R
Sbjct: 407 ENVQLDELVNYFKSR 421


>gi|256810410|ref|YP_003127779.1| glycyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793610|gb|ACV24279.1| glycyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 577

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           FR   + +RN LPF   QI   +R+E+ PR GV+R REF   +   F + PE  +H 
Sbjct: 173 FRRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLREFTQAEIEYF-VHPEKKEHE 228



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 316 SYGIGAMRVVAAVIESSH-DGKGIIWPD---SVAPFKISLINIKAHDQVCRDACEKIYAR 371
           SYGI   R+   ++E S+ + +  ++ D   S+AP K  ++ +   D + + A E I   
Sbjct: 449 SYGID--RITYCLLEHSYREEEDRVYLDLKPSIAPIKAYVLPLVNKDDMPKIAKE-INQM 505

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L +      +DD G  IG ++  AD +G P  + V  + + D  V ++ R T  +  + +
Sbjct: 506 LRESSIIAEYDDSG-AIGRRYMRADEIGVPFCITVDGQTLKDKTVTVRERNTREQIRVKI 564

Query: 432 EEVINYASHRFS 443
           +E+++Y   +  
Sbjct: 565 DELVDYLKEKLK 576


>gi|300088460|ref|YP_003758982.1| histidyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528193|gb|ADJ26661.1| histidyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 418

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 11/185 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  +G    LP  Q     V         R G   +  PT + A L+V +     D 
Sbjct: 1   MDYQSPRGTQDILPEEQAWWAYVQDRAVGIAARYGYSRIDTPTFEDARLFVRTVGEETDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            GKEM   ADR    +   P     +   +  H    R  P   + +   FR + RP+ G
Sbjct: 61  VGKEMYTFADRGGSDLTLRPEGTAPVCRAYIQHGMGSRPKPVKLFYLASIFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLS 207
             R RE      + F+L  +G   +  ++       +  LGL ++P++  S  IG  D  
Sbjct: 120 --RYRE---HHQFGFELIGDGDAAADAEVIDLAWNFYRELGLSTLPVQLNS--IGCPDCR 172

Query: 208 HEFIV 212
           H ++ 
Sbjct: 173 HSYLA 177


>gi|18397278|ref|NP_564337.1| glycyl-tRNA synthetase / glycine--tRNA ligase [Arabidopsis
           thaliana]
 gi|3334349|sp|O23627|SYGM1_ARATH RecName: Full=Glycyl-tRNA synthetase 1, mitochondrial; AltName:
           Full=Diadenosine tetraphosphate synthetase; Short=AP-4-A
           synthetase; AltName: Full=Glycine--tRNA ligase 1;
           Short=GlyRS 1; Flags: Precursor
 gi|9972358|gb|AAG10608.1|AC008030_8 glycyl-tRNA synthetase [Arabidopsis thaliana]
 gi|2564215|emb|CAA05162.1| glycyl-tRNA synthetase [Arabidopsis thaliana]
 gi|332193024|gb|AEE31145.1| glycyl-tRNA synthetase 1 [Arabidopsis thaliana]
          Length = 729

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 314 KKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPENKSH 359


>gi|261403731|ref|YP_003247955.1| glycyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261370724|gb|ACX73473.1| glycyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 575

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           FR   + +RN LPF   QI   +R+E+ PR GV+R REF   +   F + PE  +H 
Sbjct: 173 FRRLAQFFRNKLPFGVIQIGKSYRNEISPRQGVIRLREFTQAEVEYF-VHPERKEHE 228



 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 316 SYGIGAMRVVAAVIESSH-DGKGIIWPD---SVAPFKISLINIKAHDQVCRDACEKIYAR 371
           SYGI   R+   ++E ++ + +  ++ D   SVAP K  ++ +   D + + A E I   
Sbjct: 449 SYGID--RITYCLLEHAYREEEDRVYLDLKPSVAPIKAYVLPLVNKDDMPKIAKE-IEQM 505

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G    +DD G  IG ++  AD +G P  + V  + + D  + I+ R T  +  + +
Sbjct: 506 LRENGIIAEYDDSG-AIGRRYMRADEIGVPFCITVDGQTLKDGTITIRERNTREQVRIHI 564

Query: 432 EEVINYASHR 441
           EE++ Y   +
Sbjct: 565 EELVEYLKSK 574


>gi|227821937|ref|YP_002825907.1| seryl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|254783042|sp|C3MBU2|SYS_RHISN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|227340936|gb|ACP25154.1| seryl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G IE+  P L   D    +G+   + +++ R  D   + +I  PT E  +T++ R  I  
Sbjct: 191 GYIEVQPPLLVRDDAMYGTGQLPKFAEDLFRTTD--GRWLI--PTAEVPLTNMVREQILE 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     E S   + +M   
Sbjct: 247 GEKLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFNKVELVSLT-DAETSVDEHERMTAC 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 306 AEEVLKRLGLHYRVMTLCTGDMG 328


>gi|269126329|ref|YP_003299699.1| threonyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311287|gb|ACY97661.1| threonyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 684

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 150/413 (36%), Gaps = 43/413 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    R+     G   +  P L  + L+  SG  D Y + M    
Sbjct: 307 GLAVWHPKGGIVRKVMEDYSRKRHLEAGYEFVVTPHLSKSTLFETSGHLDWYAEGMYPPM 366

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           + +       P +  +   IF++  +SYR LP   +++   +R E      G+ R+R F 
Sbjct: 367 ELDGATYYPKPMNCPMHIMIFKARGRSYRELPLRMFELGTVYRYEKSGVLHGLTRARGFT 426

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI-VLAD 215
             DA+ F + P+        +    + +    GL        + P       +++  +AD
Sbjct: 427 QDDAHIF-VAPDQLAEELASLLKFVVGLLRDYGLTEFEAELATRP------EKYVGEIAD 479

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + Q        +  +P              I E   A YA   DVH   + D++    
Sbjct: 480 WEKAQAALEHALQEAGLP------------YVIAEGEGAFYAPKIDVH---IRDAIGRRW 524

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHD 334
           ++S   +++        ++ L     F+ ADG      M    + G++    A++   + 
Sbjct: 525 QLSTLQVDL----QLPQRFDL----EFQAADGTRQRPYMIHRALFGSVERFFAILLEHYA 576

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G    W   +AP ++  I I A         EK+ A+L   G     D   +++  +   
Sbjct: 577 GALPPW---LAPVQVVGIPIGASHV---PHLEKVVAQLRARGIRAEVDASDDRMQKKIRN 630

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVINYASHRFS 443
           A     P  ++ G   VS   V  ++R      G+    ++EE++     R  
Sbjct: 631 AQKAKIPYMLLAGDDDVSKDAVSFRYRSGEQKNGVPIPEAVEEIVRAVEERIQ 683


>gi|14520768|ref|NP_126243.1| glycyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|11387156|sp|Q9V176|SYG_PYRAB RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|5457984|emb|CAB49474.1| glyS glycyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 571

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 11/146 (7%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           ++ KA +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   
Sbjct: 156 KDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMIRLREFTQA 215

Query: 159 DAYSFDLTPEGSKHS-YNKMFVSYLRIF----HRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +   F   P  ++H  ++++    LR++        L  I + AE     G L + F   
Sbjct: 216 EVEIF-FNPNETEHPHFDEVKHEKLRLYPIENQLKDLGMIELTAEEAVKKGYLMNTFFAY 274

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDF 239
                  V   K  +D  IP +   F
Sbjct: 275 -----YLVMIKKILLDIGIPEDKIRF 295


>gi|15292923|gb|AAK92832.1| putative glycyl tRNA synthetase [Arabidopsis thaliana]
          Length = 729

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 314 KKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPENKSH 359


>gi|71004672|ref|XP_757002.1| hypothetical protein UM00855.1 [Ustilago maydis 521]
 gi|46096696|gb|EAK81929.1| hypothetical protein UM00855.1 [Ustilago maydis 521]
          Length = 734

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  ++ 
Sbjct: 330 PTSETVMYPYYAKWIQSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHISL 389

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +      +   Y +++ +L
Sbjct: 390 EEADKEVMHILDLYRQVYEKL 410


>gi|224368341|ref|YP_002602504.1| prolyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|223691057|gb|ACN14340.1| ProS [Desulfobacterium autotrophicum HRM2]
          Length = 504

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++      F+ AD K+ +    S+G  + R++  +I +  D  G+I
Sbjct: 236 KALQAGTSHFLGQNFARSSDIRFQNADKKEEFAWTTSWGT-STRMIGGMIMTHADDDGVI 294

Query: 340 WPDSVAPFKISLINI--KAHDQ 359
            P  VAP  + L+ I  K  DQ
Sbjct: 295 MPPRVAPAHVVLLPIARKEEDQ 316


>gi|327293177|ref|XP_003231285.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466401|gb|EGD91854.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 526

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   + P G   L+ +   +R +  + G  E+  P +    LW  SG + +Y  +M 
Sbjct: 76  YSPGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMY 135

Query: 95  RL--------ADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            +             +  IYG  P +      +F+S   SYR LP  +       R+E+ 
Sbjct: 136 EVGGRGDTGDTGETSENEIYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVS 195

Query: 145 PRF-GVMRSREFLMKDAYSF 163
               G+ R R F   D + F
Sbjct: 196 GSLSGLTRVRRFHQDDGHIF 215


>gi|316961125|gb|EFV48184.1| proline--tRNA ligase [Trichinella spiralis]
          Length = 333

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 38/81 (46%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   F   I+S+R+LP    Q     R E +     +RSREFL ++ ++     
Sbjct: 120 PTSETVMYSSFSKWIQSHRDLPLKINQWCNIVRWEFKHPTPFLRSREFLWQEGHTAHANK 179

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           + +    + +   Y R++  L
Sbjct: 180 DDAVKEVHDILDLYARVYEEL 200


>gi|170782097|ref|YP_001710430.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156666|emb|CAQ01824.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 461

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 73/376 (19%), Positives = 142/376 (37%), Gaps = 42/376 (11%)

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  +++ P       W E   +    K  L   D  +      P   + +   F + + 
Sbjct: 118 NGLADVNDPDTGQPGSWTEPQNFSGLLKTFLGPVDNQEGLHYLRPETAQGIFVNFANVLS 177

Query: 124 SYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           + R  P F   QI   FR+E+ P+  + R+REF   +   F + P G+   +++ ++   
Sbjct: 178 AARQKPPFGIGQIGKSFRNEITPQNWIFRTREFEQME-MEFFVEP-GTDAEWHQYWIDAR 235

Query: 183 RIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++  LG+    +R    P    LSH      D      F    + +    +  TD+D 
Sbjct: 236 YAWYTDLGIDPENLRLFEHP-AAKLSHYSTRTVDIEYRFGFAGGAWGELEGIANRTDYD- 293

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              L +  E      +      NE+    + E     A G+    + +    Y    +  
Sbjct: 294 ---LRTHSEASGQDLSYFDQTKNERWIPYVIE----PAAGLTRSMMAFLVDAYHEDEAPN 346

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            KG   K   +++                             +AP K++++ +  ++++ 
Sbjct: 347 AKGGVDKRTVLRLDR--------------------------RLAPVKVAVLPLSRNEKLS 380

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             A E + A L K+  ++ +DD G  IG ++   D +G P  V +    + D  V ++ R
Sbjct: 381 PVARE-LAAELRKI-WNIEFDDAG-AIGRRYRRQDEIGTPFCVTIDFDTLDDRAVTVRER 437

Query: 422 LTGIREDMSLEEVINY 437
            T  +E + L+E++ Y
Sbjct: 438 DTMAQERIPLDELVGY 453


>gi|327400952|ref|YP_004341791.1| ATP phosphoribosyltransferase regulatory subunit [Archaeoglobus
           veneficus SNP6]
 gi|327316460|gb|AEA47076.1| ATP phosphoribosyltransferase regulatory subunit [Archaeoglobus
           veneficus SNP6]
          Length = 416

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 173/452 (38%), Gaps = 91/452 (20%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKE 92
           +  +G   +LP   +    + A++R      G  E++ PT +  +L+ ++SG  +   +E
Sbjct: 4   ERPRGTRDFLPDEMEKRRAIEAVMRRIAESYGYREIATPTFEHLELFTIKSG--EGIVEE 61

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVM 150
           +    D+  + +   P   E+   + R  +   S    P  FY     FR E RP+ G  
Sbjct: 62  LYAFKDKGGRDLALRP---ELTAPVMRLFVNECSVMPRPLRFYYFANCFRYE-RPQKG-- 115

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REF     +  +L    S  S  ++     RI   L L         G +G  L H  
Sbjct: 116 RYREFWQ---FGVELIGSSSHLSDAEVIALAYRIMDELNLD---FELHIGHVG-LLRH-- 166

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-------YA-----A 258
            +L D  E +   +   M         D  D+  L+S + +  AP       YA      
Sbjct: 167 -LLKDIEEDR---ASKIMRL------IDKKDVEGLSSYLREINAPEELAEKIYALIELTG 216

Query: 259 TSDV--------------HNEKL---FDSLPENKRVS---ARGIE--VGHIFYFGTKYSL 296
           + DV              H EKL    DS+  N  +    ARG++   G +F    K+ L
Sbjct: 217 SRDVLVEASRLIPDFDMSHMEKLCDVLDSMNVNYVIDLGIARGLDYYTGVVFEAYAKHGL 276

Query: 297 PMSATFKGAD---------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                  G           G+D  V    + +G  R+ A + E +   K +I        
Sbjct: 277 GAQKQICGGGSYRLTHLFGGED--VPSTGFALGFDRI-AEICEITPPQKPVIV------- 326

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
              ++N+    +  R A E     L K G  V  D M   I  QF+ A+ +     V+VG
Sbjct: 327 ---VVNVGFEGEAFRIAEE-----LRKQGFRVVTDVMERNIRKQFSYANDINASFAVVVG 378

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + +   +  +K+ +TG   ++S EE++ + S
Sbjct: 379 KREIESGRYTLKNMVTGEHYELSFEELVKHLS 410


>gi|321260376|ref|XP_003194908.1| glycine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317461380|gb|ADV23121.1| Glycine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 699

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V+E ++        +G++  P  VAP K  +++I + D   R    ++
Sbjct: 545 SFGIG--RILYSVLEHTYWAREQDAARGVLSLPTVVAPIKCLIVSI-SQDAQLRSKIHEV 601

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              + K G     DD    IG ++A  D LG P    V    + +  + ++ R +  +  
Sbjct: 602 SREMRKRGIASRVDDSSATIGKKYARNDELGTPFGCTVDFATIQNGTMTLRERDSTAQLI 661

Query: 429 MSLEEVIN 436
             +E+VI+
Sbjct: 662 GPIEDVIS 669


>gi|167377346|ref|XP_001734365.1| glycyl-tRNA synthetase [Entamoeba dispar SAW760]
 gi|165904156|gb|EDR29482.1| glycyl-tRNA synthetase, putative [Entamoeba dispar SAW760]
          Length = 627

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+G+G  RV+ AV+E S      ++ K ++  P S+AP K+ L  +    +      E  
Sbjct: 474 SFGVG--RVLTAVLEHSFWVREDNEAKSVLSIPASIAPVKVGLFPLLTKPEFNNKVAE-- 529

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++ K G   F  +     IG ++A AD  G P  V V    +SD+ V ++ R T
Sbjct: 530 IEKICKNGFLSFKSNTTAVAIGKKYAQADEAGIPFDVTVDYTSLSDNTVTLRDRDT 585


>gi|316978849|gb|EFV61767.1| putative proline--tRNA ligase [Trichinella spiralis]
          Length = 1494

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 38/81 (46%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   F   I+S+R+LP    Q     R E +     +RSREFL ++ ++     
Sbjct: 1068 PTSETVMYSSFSKWIQSHRDLPLKINQWCNIVRWEFKHPTPFLRSREFLWQEGHTAHANK 1127

Query: 168  EGSKHSYNKMFVSYLRIFHRL 188
            + +    + +   Y R++  L
Sbjct: 1128 DDAVKEVHDILDLYARVYEEL 1148


>gi|224014080|ref|XP_002296703.1| prolyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220968558|gb|EED86904.1| prolyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 521

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M   F   I+S+R+LP    Q     R E +     +R+REFL ++ ++   + 
Sbjct: 135 PTSETIMYPAFADWIRSHRDLPLKLNQWSNVVRWEFKDPTPFLRTREFLWQEGHTAHASY 194

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E +     +    Y R++  L
Sbjct: 195 EDADVMVMQALDLYRRVYEEL 215


>gi|13542219|ref|NP_111907.1| glycyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|14325653|dbj|BAB60556.1| tRNA synthetase Gly [Thermoplasma volcanium GSS1]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 125/325 (38%), Gaps = 39/325 (12%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           S   +P    Q+   FR+E+ PR  ++R REF   +   F L       + N +    LR
Sbjct: 170 SRNTMPIIVCQVGKGFRNEISPRQALIRMREFTQAEVEVFYLNDSDFNPNGNSLKFKLLR 229

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    +     SG +   +   F+         +  S  F   P      + D + 
Sbjct: 230 NTGEEVTVDLKEALHSGIVKNPVMAYFL----EKTYSILSSIGFN--PNHLRAREHDPLE 283

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
             +   E W   Y                    +    IE+  +   GT Y L     F 
Sbjct: 284 RAHYSSETWDFEYL-------------------MDGEWIEIVGVSDRGT-YDLGRHQQFS 323

Query: 304 G----ADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPD-SVAPFKISLINI 354
           G     DG    V   SYGI   R+V  ++   +    +G  ++  D +V+P   ++  +
Sbjct: 324 GENMEVDGNIPRVVEPSYGID--RIVLTILNDGYYIRDNGYKVLKLDPAVSPLHFAVFPL 381

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           +  D +   A E ++ ++ ++   V++D+ G  IG ++A  D +G P  + V  + + DS
Sbjct: 382 QRRDGLDAKAKE-LFNKIKQIDPFVYYDEGG-NIGRRYARQDEIGTPFCITVDYETLEDS 439

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
            V I+ R +  +   ++EE++   S
Sbjct: 440 TVTIRERDSTKQVRENIEELLQKIS 464



 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 32 IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
          I+  S G Y + PLG    DN+ +I ++   + GAI +  P +  AD++  SG  + +
Sbjct: 22 IYGGSSGFYDYGPLGTLLKDNIISIWKKSYAKEGAIFLDTPVIAPADVFKASGHLEKF 79


>gi|330719001|ref|ZP_08313601.1| seryl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 436

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 8/168 (4%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  EM  P + +      +G+Y  + ++  R+A  +     Y PT E  +T+ +
Sbjct: 192 DEHRKEGYTEMITPIVVNDSAMFGTGQYPKFQEDAYRVAGLD---QTYIPTAEVPLTNYY 248

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
                   +LP  F  +   FR E     +   G++R  +F   +   F   PE S    
Sbjct: 249 SGETLPAEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMVKF-TKPEQSYDEL 307

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            KM  +   I  +LGL    +   +G +G   +  + V     + QV+
Sbjct: 308 EKMTANAENILQKLGLPYHVIALSTGDMGFSAAKTYDVEVWMPQQQVY 355


>gi|87199967|ref|YP_497224.1| prolyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
 gi|114152224|sp|Q2G6Y3|SYP_NOVAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87135648|gb|ABD26390.1| prolyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
          Length = 515

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      ++  +G+       S+G+ + R++  VI +  D  G+
Sbjct: 238 GKALQAGTSHYLGTTFAKAAGIQYQNKEGQQALAHTTSWGV-STRLIGGVIMTHGDDDGL 296

Query: 339 IWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKV 375
             P  VAP +I ++ +      D      CE+I A L K+
Sbjct: 297 RVPPQVAPQQIVILPMLRDNEGDDALLAYCEEIRASLVKL 336


>gi|86357454|ref|YP_469346.1| seryl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|123512164|sp|Q2K967|SYS_RHIEC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|86281556|gb|ABC90619.1| seryl-tRNA synthetase (serine-tRNA ligase) protein [Rhizobium etli
           CFN 42]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+S P +  A+    +G    + +++ +  D   + +I  PT E  +T++ R  I  
Sbjct: 191 GYTEVSSPLMVRAEAVFGTGSLPKFEEDLFKTTD--GRYLI--PTAEVTLTNLVREEILD 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     E S   + +M   
Sbjct: 247 QEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TDAESSIAEHERMTAC 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 306 AEEVLKRLGLHFRTMTLCTGDMG 328


>gi|125973847|ref|YP_001037757.1| histidyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256004300|ref|ZP_05429282.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281418008|ref|ZP_06249028.1| histidyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166227964|sp|A3DF35|SYH_CLOTH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125714072|gb|ABN52564.1| histidyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|255991734|gb|EEU01834.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409410|gb|EFB39668.1| histidyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316939956|gb|ADU73990.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 6/104 (5%)

Query: 334 DGKGIIWPDSVAP-FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + +GI +P+S  P   I+ I  KA+        EK+   L K G     D MG+ + +Q 
Sbjct: 315 ENQGIKFPESKKPDIFIAAIGDKANSYA-----EKMVYELRKEGLSAEKDLMGKSLKAQM 369

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             AD LG    + +G   +   K  +K+  TG ++++SL+ +I+
Sbjct: 370 KYADKLGAKYSIALGDDEIESGKAVLKNMETGEQKEISLDTLIS 413


>gi|296422769|ref|XP_002840931.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637158|emb|CAZ85122.1| unnamed protein product [Tuber melanosporum]
          Length = 459

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + H  S G   +LP G +  + + + IR +    G  E+  PT+    LW  SG +++Y 
Sbjct: 68  ITHPVSPGSPLFLPHGSRIFNKLISFIRSQYTLYGYEEVITPTIYKKSLWETSGHWENYN 127

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRF- 147
           + M ++    +  +   P +      +F+      S R+LP  +       R+E      
Sbjct: 128 EHMFKVEAGEEFGL--KPMNCPGHCLLFKHAAGKLSLRDLPVRYADFSPLHRNENSGSLS 185

Query: 148 GVMRSREFLMKDAYSF 163
           G+ R R F   DA+ F
Sbjct: 186 GLTRVRRFHQDDAHIF 201


>gi|298711240|emb|CBJ32460.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 147

 Score = 39.7 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +AP ++ L+ +     V RD C ++ ++  K G  V  D   E++  Q   A+   
Sbjct: 25  FPLWLAPEQMRLLPVT---DVARDYCLEVQSKFKKAGLRVKVDRGSERLAKQIRTAEKER 81

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P+  +VG K V+   + ++ R  G   D+ ++E+I
Sbjct: 82  IPVMSVVGEKEVAAGTLAVRSRGFGDMGDVPIDELI 117


>gi|116753590|ref|YP_842708.1| glycyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121693195|sp|A0B5U4|SYG_METTP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|116665041|gb|ABK14068.1| glycyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 577

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH-SYN 175
           F+  ++ YR+ LPF   QI   +R+E+ PR GV+R REF   +A  F + P   +H  ++
Sbjct: 170 FQRLLRYYRDSLPFGAVQIGRSYRNEISPRQGVIRLREFSQAEAEVF-IDPRNKQHPRFS 228

Query: 176 KMFVSYLRIFHR 187
           ++    LR++ R
Sbjct: 229 EVKDLRLRLYSR 240


>gi|319411507|emb|CBQ73551.1| probable glycine--tRNA ligase GRS1 [Sporisorium reilianum]
          Length = 681

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF   QI   FR+E+ PR G++R REF M +   F + PE   H
Sbjct: 267 VPFASAQIGKSFRNEISPRAGLLRVREFTMAEIEHF-VDPEDKNH 310


>gi|254561516|ref|YP_003068611.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
 gi|254268794|emb|CAX24755.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
          Length = 675

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G      + A +R       A E++ P +    LW  SG +  Y + 
Sbjct: 257 QEEGPGVVFWHAKGWTIFQELIAYMRRRLKGDYA-EVNAPQILDKSLWETSGHWGWYREN 315

Query: 93  MLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       ++A         P +      IF+  +KSYR+LP    +  +  R E     
Sbjct: 316 MFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAM 375

Query: 148 -GVMRSREFLMKDAYSF 163
            G+MR R F   DA+ F
Sbjct: 376 HGLMRVRGFTQDDAHIF 392


>gi|46107732|ref|XP_380925.1| hypothetical protein FG00749.1 [Gibberella zeae PH-1]
          Length = 499

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 24/153 (15%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G +  + +   +R++  R G  E+  PT+    LW +SG  ++Y  +M 
Sbjct: 58  YSPGSPIFLPNGARIFNRLVDFLRKQYVRYGFEEVITPTIYKKSLWAKSGHLENYADDMY 117

Query: 95  RLADRNDKAMIYG---PTHEEVMTD--------------------IFRSHIKSYRNLPFT 131
            +    +    +     +H+E +                      IF S   SYR+LP  
Sbjct: 118 AVRGNTEPPPQHDGCCGSHQEYLKPEEEEEGDYGLKPMNCPGHCLIFASKRHSYRDLPVR 177

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +       R+E+     G+ R R F   D + F
Sbjct: 178 YADFSPLHRNEISGALSGLTRVRRFHQDDGHIF 210


>gi|163851744|ref|YP_001639787.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|163663349|gb|ABY30716.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 675

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G      + A +R       A E++ P +    LW  SG +  Y + 
Sbjct: 257 QEEGPGVVFWHAKGWTIFQELIAYMRRRLKGDYA-EVNAPQILDKSLWETSGHWGWYREN 315

Query: 93  MLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       ++A         P +      IF+  +KSYR+LP    +  +  R E     
Sbjct: 316 MFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAM 375

Query: 148 -GVMRSREFLMKDAYSF 163
            G+MR R F   DA+ F
Sbjct: 376 HGLMRVRGFTQDDAHIF 392


>gi|15897317|ref|NP_341922.1| threonyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284173344|ref|ZP_06387313.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|13813530|gb|AAK40712.1| Threonyl-tRNA synthetase homolog (thrS-like) [Sulfolobus
           solfataricus P2]
 gi|261601991|gb|ACX91594.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 386

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PD + P ++ L+ +K       D   ++  RL K G  V  DD+ + +G++   A     
Sbjct: 270 PDWLNPIQVRLLPVKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTDWI 326

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           P  +++G + V  + + +K R    ++ M++EE++
Sbjct: 327 PFVIVIGEREVKTNTLTVKIRARNEQKSMTVEELV 361


>gi|57999481|emb|CAI45949.1| hypothetical protein [Homo sapiens]
          Length = 1512

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 115/327 (35%), Gaps = 69/327 (21%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ +S  +T 
Sbjct: 1120 PTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFVTV 1179

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            E +     ++   Y +++    L +IP                +V     E + F   D+
Sbjct: 1180 EEAAEEVLQILDLYAQVYEE--LLAIP----------------VVKGRKTEKEKFAGGDY 1221

Query: 228  MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     T  +  IS                                 S R I+ G  
Sbjct: 1222 --------TTTIEAFIS--------------------------------ASGRAIQGGTS 1241

Query: 288  FYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
             + G  +S      F+     G+  +    S+G+   R +  +     D  G++ P  VA
Sbjct: 1242 HHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGL-TTRTIGVMTMVHGDNMGLVLPPRVA 1300

Query: 346  PFKISLINIKAHDQVCRDACEKIYA-------RLSKVGCDVFWDDMGE-QIGSQFAVADL 397
              ++ +I     + +  +  E + A       RL  V   V  D       G +F   +L
Sbjct: 1301 CVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWEL 1360

Query: 398  LGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             G P+++ VG + +   +     R TG
Sbjct: 1361 KGVPIRLEVGPRDMKSCQFVAVRRDTG 1387


>gi|317151961|ref|YP_004120009.1| histidyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942212|gb|ADU61263.1| histidyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 418

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 16/172 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS--YGK 91
           Q  KG     P        +  + R+  +R    E+  P L+  +L+ +S   D+   GK
Sbjct: 5   QKIKGFVDLFPEEAAKFTRMETLARDIFSRYAFGELRTPVLEKTELFQKSIGEDTDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP---FTFYQIQLKFRDELRPRFG 148
           EM    DR D+++   P   E    + R+ I+S  + P     F+     FR E RP+ G
Sbjct: 65  EMFTFPDRKDRSLTMRP---EATAGVVRAFIESGTHQPGKVSKFFTFGPMFRYE-RPQKG 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-HRLGLKSIPMRAES 199
             R R+F   +A  F   PE      +   +  LR F + LGL  + +   S
Sbjct: 121 --RQRQFHQINAEIFG-APEAQA---DGELILMLRTFLNALGLTKLTVELNS 166


>gi|218530550|ref|YP_002421366.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|218522853|gb|ACK83438.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 675

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G      + A +R       A E++ P +    LW  SG +  Y + 
Sbjct: 257 QEEGPGVVFWHAKGWTIFQELIAYMRRRLKGDYA-EVNAPQILDKSLWETSGHWGWYREN 315

Query: 93  MLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       ++A         P +      IF+  +KSYR+LP    +  +  R E     
Sbjct: 316 MFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAM 375

Query: 148 -GVMRSREFLMKDAYSF 163
            G+MR R F   DA+ F
Sbjct: 376 HGLMRVRGFTQDDAHIF 392


>gi|170116654|ref|XP_001889517.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164635519|gb|EDQ99825.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 652

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESSHDGK------GII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+G+G  R++  ++E S   +      G++  P  VAP K+ ++ + A D+      +++
Sbjct: 499 SFGLG--RILYTLLEHSFWSREQDVERGVLSLPPLVAPTKVLIVPLSARDEF-NPLVQEV 555

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ++L K G     DD    IG ++A  D LG P  V +    V +  + ++ R T  +  
Sbjct: 556 SSKLRKAGVFSRVDDSNTSIGKRYARNDELGTPFGVTLDFASVQNRTMTLRERDTMDQRI 615

Query: 429 MSLEEVI 435
            S+++VI
Sbjct: 616 GSIDDVI 622



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF   QI   FR+E+ PR G++R REF M +   + + PE  +H
Sbjct: 239 VPFASAQIGRSFRNEISPRAGLLRVREFTMAEIEHY-VDPEDKRH 282


>gi|71018157|ref|XP_759309.1| hypothetical protein UM03162.1 [Ustilago maydis 521]
 gi|46099159|gb|EAK84392.1| hypothetical protein UM03162.1 [Ustilago maydis 521]
          Length = 681

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF   QI   FR+E+ PR G++R REF M +   F + PE   H
Sbjct: 267 VPFASAQIGKSFRNEISPRAGLLRVREFTMAEIEHF-VDPEDKNH 310



 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R+  +++E S         +G++  P  VAP K S++ I +++++     +++
Sbjct: 527 SFGIG--RIFYSLLEHSFWTRAEDQDRGVLSLPPLVAPIKASIVPISSNEKLS-PLVKQV 583

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G     DD    IG ++A  D LG P    +    +S   + ++ R T  +  
Sbjct: 584 SRKLRSAGVASRVDDSNASIGRRYARNDELGTPFACTLDFASLSKGTMTLRERDTTAQRI 643

Query: 429 MSLEEVIN 436
             +++VI+
Sbjct: 644 GPIDQVID 651


>gi|300176086|emb|CBK23397.2| Prolyl-tRNA synthetase [Blastocystis hominis]
          Length = 546

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%)

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E +M   +   I+ +R+LP    Q     R E +     +R+REFL ++ +S   T 
Sbjct: 151 PTSETIMYPAYARWIRGHRDLPLRLNQWTNVVRWEFKHPTPFIRTREFLWQEGHSAFATK 210

Query: 168 EGSKHSYNKMFVSYLRIFHRL 188
           E ++    ++   Y R++  L
Sbjct: 211 EEAEKEVLEILDYYARVYEEL 231


>gi|240138908|ref|YP_002963383.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
 gi|240008880|gb|ACS40106.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
          Length = 675

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G      + A +R       A E++ P +    LW  SG +  Y + 
Sbjct: 257 QEEGPGVVFWHAKGWTIFQELIAYMRRRLKGDYA-EVNAPQILDKSLWETSGHWGWYREN 315

Query: 93  MLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       ++A         P +      IF+  +KSYR+LP    +  +  R E     
Sbjct: 316 MFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAM 375

Query: 148 -GVMRSREFLMKDAYSF 163
            G+MR R F   DA+ F
Sbjct: 376 HGLMRVRGFTQDDAHIF 392


>gi|260943664|ref|XP_002616130.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849779|gb|EEQ39243.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 653

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
            +PF    I   FR+E+ PR G++R REFLM +   F + PE   H
Sbjct: 237 KMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPENKNH 281



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIE-------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++ E          D   +  P  VAP K+ ++ + +H  +     +KI
Sbjct: 500 SFGIG--RILYSIFEHQFWSRPEDKDRSVLSLPPLVAPTKVLVVPLSSHADLL-PLVKKI 556

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K       DD    IG ++A  D LG P  + +      D  V ++ R +  +  
Sbjct: 557 SAVLRKEQIPFKVDDSSASIGKRYARNDELGTPFGITIDFDTAKDGSVTLRERDSTKQVR 616

Query: 429 MSLEEVI 435
            S+E+++
Sbjct: 617 GSVEDIV 623


>gi|255071855|ref|XP_002499602.1| predicted protein [Micromonas sp. RCC299]
 gi|226514864|gb|ACO60860.1| predicted protein [Micromonas sp. RCC299]
          Length = 670

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-YNKMFVSYLRIF 185
            LPF   QI   FR+E+ PR G++R REF   +   F + PE   HS + ++    L +F
Sbjct: 258 KLPFAAAQIGQSFRNEIAPRAGLLRVREFTQAEIEHF-VHPEQKDHSRFAEVADVMLSLF 316

Query: 186 HR---LGL--KSIPMR----AESGPIGGDLSHEFIVLADTGETQVFCSK 225
            R   LG   K  PM      E G +       FI       TQ F  K
Sbjct: 317 SRDAQLGAVKKPFPMTIGEAVEKGIVANQTLGYFI-----ARTQTFLEK 360


>gi|134084000|emb|CAK49155.1| unnamed protein product [Aspergillus niger]
          Length = 626

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++PF    I   FR+E+ PR G++R REFLM +   F + P+G K
Sbjct: 320 QSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPQGGK 364


>gi|167525699|ref|XP_001747184.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774479|gb|EDQ88108.1| predicted protein [Monosiga brevicollis MX1]
          Length = 913

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 26/141 (18%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD----SYGKEMLRLADRNDKAMIY- 106
           + +A +++E  + G +  S      A+LW    R+D    + G ++    D N   M++ 
Sbjct: 220 DTSAELKKECEKIGRLADS---YSKAELWDLYKRFDIKSPTTGNDLSEPVDFN---MMFQ 273

Query: 107 ---GPT-------HEEVMTDIFRSHIKSYR----NLPFTFYQIQLKFRDELRPRFGVMRS 152
              GPT         E    IF +  + Y      LPF   QI   FR+E+ P+ G++R 
Sbjct: 274 TQIGPTGHLAGFLRPETAQGIFLAFKRLYEFNNFKLPFAGAQIGTAFRNEISPKAGLLRV 333

Query: 153 REFLMKDAYSFDLTPEGSKHS 173
           REF M +   F L P    H+
Sbjct: 334 REFQMAEIEHF-LDPTDKSHA 353


>gi|293376342|ref|ZP_06622579.1| glycine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292645031|gb|EFF63104.1| glycine--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 457

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 18/134 (13%)

Query: 319 IGAMRVVAA---------VIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEK 367
           +GA RV  A          +E+    + + +  ++AP+K++++ +  K ++Q       +
Sbjct: 328 VGADRVTLAFLVDAYAEETLENGETREVLKFHPALAPYKVAVLPLVKKLNEQAL-----E 382

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           ++A LSK    V +D+ G  IG ++   D +G P  V      + D KV ++HR T  +E
Sbjct: 383 VFADLSK-HMMVDYDEAG-TIGKRYRRQDAIGTPFCVTFDYDSLEDKKVTVRHRDTMEQE 440

Query: 428 DMSLEEVINYASHR 441
            ++++E++ Y + +
Sbjct: 441 RVAIDELVEYITSK 454


>gi|227892467|ref|ZP_04010272.1| seryl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227865760|gb|EEJ73181.1| seryl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|300214095|gb|ADJ78511.1| Seryl-tRNA synthetase (Seryl-tRNA(Ser/Sec) synthetase)
           (Serine--tRNA ligase) (SerRS) [Lactobacillus salivarius
           CECT 5713]
          Length = 425

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 20/256 (7%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG K    V   + +E  + G  E+  P +  A     +G++  +  ++ ++   N + M
Sbjct: 169 LGAKLERAVYNFMLDEHAKEGYTEVIPPYIVKAKSMYGTGQFPKFKDQVYQV---NGEDM 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  +    +LP  F  +   FR E     R   G++R  +F   + 
Sbjct: 226 TLIPTAEVPLTNYYREEVIPTEDLPVYFTALSPSFRSEAGSAGRDTRGLIRMHQFNKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGE 218
             +   PE S +   KM  +   I  +LGL    +   +G +G    ++H+  V     +
Sbjct: 286 VKY-TKPEDSYNELEKMTKNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEVWMPAQD 344

Query: 219 T--QVFCSKDFMDFPI-------PSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLF 268
           T  ++    +  DF           EN     + +LN S +       A   +  NE   
Sbjct: 345 TYREISSCSNCEDFQARRARIQYRDENGKLQYVHTLNGSGLAVGRTVAAILENYQNEDGS 404

Query: 269 DSLPENKRVSARGIEV 284
            ++PE  R   +G+EV
Sbjct: 405 VTIPEALRPYMQGLEV 420


>gi|188581528|ref|YP_001924973.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|179345026|gb|ACB80438.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 675

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G      + A +R       A E++ P +    LW  SG +  Y + 
Sbjct: 257 QEEGPGVVFWHAKGWTIFQELIAYMRRRLKGDYA-EVNAPQILDKSLWETSGHWGWYREN 315

Query: 93  MLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       ++A         P +      IF+  +KSYR+LP    +  +  R E     
Sbjct: 316 MFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAM 375

Query: 148 -GVMRSREFLMKDAYSF 163
            G+MR R F   DA+ F
Sbjct: 376 HGLMRVRGFTQDDAHIF 392


>gi|289193291|ref|YP_003459232.1| glycyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288939741|gb|ADC70496.1| glycyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 577

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           FR   + +RN LPF   QI   +R+E+ PR GV+R REF   +   F + PE  +H 
Sbjct: 173 FRRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLREFTQAEIEYF-VHPERKEHE 228



 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 8/133 (6%)

Query: 316 SYGIGAMRVVAAVIESSH-DGKGIIWPD---SVAPFKISLINIKAHDQVCRDACEKIYAR 371
           SYGI   R+   ++E S+ + +  ++ D   S+AP K  ++ +   + + + A E I   
Sbjct: 449 SYGID--RITYCLLEHSYREEEDRVYLDLKPSIAPIKAYVLPLVNKEDMPKIAKE-IEKM 505

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G    +DD G  IG ++  AD +G P  + V  + + D  V ++ R T  +  + +
Sbjct: 506 LRENGIIAEYDDSG-AIGRRYMRADEIGVPFCITVDGQTLKDKTVTVRERNTREQVRVKI 564

Query: 432 EEVINYASHRFSN 444
           +E+++Y   +  +
Sbjct: 565 DELVDYLKEKLKD 577


>gi|302671729|ref|YP_003831689.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
 gi|302396202|gb|ADL35107.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
          Length = 634

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  WLP G K    +    RE Q R G  E++ P + +  LW+ SG +  Y 
Sbjct: 202 MFDETAPGMPYWLPRGWKMYQALLKYSREIQERHGYTEIAAPLVNNKKLWLISGHWAHYV 261

Query: 91  KEMLR-----------------LADRNDK------------AMIYGPTHEEVMTD----- 116
             M                   L + ND             ++IY     + M       
Sbjct: 262 NNMFMVPGVSGWLKADAEIPGILENNNDPTEEPKNIKIQAGSVIYNREQNDTMAAKPMNC 321

Query: 117 -----IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
                 ++    SY+ LP  + +  +  R E   +  G+ R +EF   D ++F
Sbjct: 322 PNAMMTYKRTNHSYKELPIRYSEYDVLHRKEKSGQMNGLFRVQEFRQDDDHTF 374


>gi|104774578|ref|YP_619558.1| seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116514698|ref|YP_813604.1| seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122274570|sp|Q048F6|SYS_LACDB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123077195|sp|Q1G8N2|SYS_LACDA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|103423659|emb|CAI98620.1| Seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116094013|gb|ABJ59166.1| seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325126383|gb|ADY85713.1| Seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 435

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVM 114
           +E    G  E+  P+L + D    +G++  + +++  + D +D    + +   PT E  +
Sbjct: 183 DENTSEGYTEVITPSLVNNDSMQGTGQFPKFTEDVYTIVDNDDPEVARNLTLIPTAEVPL 242

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGS 170
            + FR  I   +NLP     +   FR E     R   G++R  EF   +     + PE S
Sbjct: 243 VNYFRGDIIDGKNLPINVTALSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKV-VKPEDS 301

Query: 171 KHSYNKMFVSYLRIFHRLGL 190
                 +  +   +  +LGL
Sbjct: 302 WKELENLTHNAEHLLQKLGL 321


>gi|327288851|ref|XP_003229138.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 706

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 11  LQENPRDAEIASHKLMLRTG------MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L E  R  E A+ +   R G        H+ S G   +LP G      +   I+ E  + 
Sbjct: 313 LTEWERTQEEAARRDHRRIGKEQELFFFHELSPGSCFFLPKGAHIYTTLVDFIKSEYLKR 372

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW  SG +  Y + M       +   +  P +      +F    +S
Sbjct: 373 GFSEVITPNIFNSKLWETSGHWQHYEENMFSFRLEGETFAL-KPMNCPGHCLMFGHRPRS 431

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +R LP       +  R+E      G+ R R F   DA+ F
Sbjct: 432 WRELPLRLADFGVLHRNEPSGALSGLTRVRRFQQDDAHIF 471


>gi|126460233|ref|YP_001056511.1| glycyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|126249954|gb|ABO09045.1| glycyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 588

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 320 GAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSK 374
           G  R++  V+E +   +G    +  P  +AP  + ++ I K  D V     +++   L+ 
Sbjct: 447 GLDRILYVVLEHAVAEEGGRVYLRLPPDIAPVTLCILPIVKREDYVA--IGKRLMRELAS 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V +DD G  IGS++A  D +G PL V +  +   D  V I+ R T  +  +   +V
Sbjct: 505 EGFLVHYDDEG-TIGSRYAACDEVGTPLAVTIDERTPVDGTVTIRDRDTRRQVRVKTSDV 563

Query: 435 INYAS 439
             +A+
Sbjct: 564 ARFAA 568


>gi|213407904|ref|XP_002174723.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212002770|gb|EEB08430.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 464

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I+  S G   +LP G + ++++   +R +    G  E+  P +   +LW  SG    Y +
Sbjct: 52  INHLSPGSIYFLPHGTRIINSITNFLRTQYEVLGFKEVITPLIYKPELWKRSGHLSKYKE 111

Query: 92  EMLRLA------DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            M  +       D+ D +     P +      +F    +SY+ LP  F       R E  
Sbjct: 112 NMFFVTSEHNSEDQKDSSSFGLKPMNCPAHCLLFAEEERSYKELPLRFADFSTLHRYEAS 171

Query: 145 PRF-GVMRSREFLMKDAYSF 163
               G+ R R F   D + F
Sbjct: 172 GALSGLTRLRSFHQDDGHIF 191


>gi|326501058|dbj|BAJ98760.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 275 QKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 320


>gi|313124469|ref|YP_004034728.1| seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312281032|gb|ADQ61751.1| Seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 435

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVM 114
           +E    G  E+  P+L + D    +G++  + +++  + D +D    + +   PT E  +
Sbjct: 183 DENTSEGYTEVITPSLVNNDSMQGTGQFPKFTEDVYTIVDNDDPEVARNLTLIPTAEVPL 242

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGS 170
            + FR  I   +NLP     +   FR E     R   G++R  EF   +     + PE S
Sbjct: 243 VNYFRGDIIDGKNLPINVTALSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKV-VKPEDS 301

Query: 171 KHSYNKMFVSYLRIFHRLGL 190
                 +  +   +  +LGL
Sbjct: 302 WKELENLTHNAEHLLQKLGL 321


>gi|255513372|gb|EET89638.1| prolyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 484

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   PT E +M D +   I+S+R+LP    Q     R E +     +RSREFL  + 
Sbjct: 107 DERLAVRPTSETIMYDSYSKWIRSWRDLPLRLNQWNNVVRWEFKHPTPFLRSREFLWNEG 166

Query: 161 YS 162
           ++
Sbjct: 167 HT 168


>gi|327189128|gb|EGE56313.1| seryl-tRNA synthetase [Rhizobium etli CNPAF512]
          Length = 427

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+S P +  A+    +G    + +++ +  D   + +I  PT E  +T++ R  I  
Sbjct: 191 GYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD--GRYLI--PTAEVTLTNLVREEILD 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     E +   + +M   
Sbjct: 247 QEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT-DAESAIAEHERMTAC 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 306 AEEVLKRLGLHFRTMTLCTGDMG 328


>gi|308464759|ref|XP_003094644.1| hypothetical protein CRE_31457 [Caenorhabditis remanei]
 gi|308247111|gb|EFO91063.1| hypothetical protein CRE_31457 [Caenorhabditis remanei]
          Length = 868

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           KA +   T + +  +  R    +Y  LPF   QI L FR+E+ PR G++  REF M +  
Sbjct: 434 KAFLRPETAQGIFVNFKRLLEFNYGKLPFAAAQIGLVFRNEISPRQGLIHVREFTMCEIE 493

Query: 162 SFDLTPEGSKHS 173
            F + PE    S
Sbjct: 494 HF-VDPEDKSFS 504


>gi|300811782|ref|ZP_07092255.1| serine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497281|gb|EFK32330.1| serine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|325685463|gb|EGD27561.1| serine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 435

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVM 114
           +E    G  E+  P+L + D    +G++  + +++  + D +D    + +   PT E  +
Sbjct: 183 DENTSEGYTEVITPSLVNNDSMQGTGQFPKFTEDVYTIVDNDDPEVARNLTLIPTAEVPL 242

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGS 170
            + FR  I   +NLP     +   FR E     R   G++R  EF   +     + PE S
Sbjct: 243 VNYFRGDIIDGKNLPINVTALSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKV-VKPEDS 301

Query: 171 KHSYNKMFVSYLRIFHRLGL 190
                 +  +   +  +LGL
Sbjct: 302 WKELENLTHNAEHLLQKLGL 321


>gi|115477547|ref|NP_001062369.1| Os08g0538000 [Oryza sativa Japonica Group]
 gi|38175549|dbj|BAD01242.1| putative glycyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113624338|dbj|BAF24283.1| Os08g0538000 [Oryza sativa Japonica Group]
 gi|125562356|gb|EAZ07804.1| hypothetical protein OsI_30061 [Oryza sativa Indica Group]
 gi|125604166|gb|EAZ43491.1| hypothetical protein OsJ_28106 [Oryza sativa Japonica Group]
          Length = 698

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 282 QKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 327


>gi|170584765|ref|XP_001897164.1| bifunctional aminoacyl-tRNA synthetase [Brugia malayi]
 gi|158595450|gb|EDP34004.1| bifunctional aminoacyl-tRNA synthetase, putative [Brugia malayi]
          Length = 1572

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 277  VSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V+ RGI+     + G  +S     +F+  + GK  +    S+G+   R + A+I    D 
Sbjct: 1307 VNGRGIQGATSHHLGQNFSKMFDISFEDPETGKKTFAWQNSWGM-TTRTIGAMIMIHSDN 1365

Query: 336  KGIIWPDSVAPFKISLINI----KAHDQVCRDACEKIYARL-----SKVGCDVFWDDMGE 386
             G++ P  VAP ++ +I +    + H+++ ++   KI   +     SK+  D+   D   
Sbjct: 1366 DGLVLPPRVAPIQVIIIPVGIASQMHNKIKQEIITKIEEIIKTLENSKIRVDIDLRD-NY 1424

Query: 387  QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G +F   +L G P+++ +G K +  S+V    R
Sbjct: 1425 SPGWKFNHWELKGVPIRLELGPKDIEKSQVTCVTR 1459


>gi|92117217|ref|YP_576946.1| threonyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|91800111|gb|ABE62486.1| Ser-tRNA(Thr) hydrolase [Nitrobacter hamburgensis X14]
          Length = 681

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG ++ Y + M       D+A         P +      IF+  +
Sbjct: 316 EVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFAIKPMNCPGHVLIFKHGL 375

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 376 KSYRELPIRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF 417


>gi|326431769|gb|EGD77339.1| threonyl-tRNA synthetase isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 766

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   + P G +    +   +RE+    G  E+  P + +  LW  SG +  Y + +  
Sbjct: 342 SPGSCFFEPRGARIYRTLMEFMREQYITRGFEEVVTPNIFNKRLWETSGHWQHYAENIFS 401

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
               N+      P +      +F    +SY+ LP       +  R+EL     G+ R R 
Sbjct: 402 FEVENE-TFAMKPMNCPSHCVMFSHRNRSYKELPLRMADFGVLHRNELSGALTGLTRVRR 460

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 461 FQQDDAHIF 469


>gi|108804139|ref|YP_644076.1| Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase [Rubrobacter
           xylanophilus DSM 9941]
 gi|123368184|sp|Q1AWG4|SYT_RUBXD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108765382|gb|ABG04264.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 639

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 2/161 (1%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L T        GI  +LP G+     +   +RE Q R
Sbjct: 226 RAYLKRLEEARARDHRRLGRELGLFTFAPEDVGPGIPLFLPKGETLRHLMEGFVREVQTR 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +    L +  L+  SG  + Y   M       + +    P +      +F S  +
Sbjct: 286 HGYQHVWTGHLVNERLYARSGHLEHYRDAMFPPMRDGEVSYRLKPMNCPSHMTLFNSRPR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           SYR LP  + +    +R E      G+ R R     DA+ F
Sbjct: 346 SYRELPVRYAEFATLYRYEKSGELSGLTRVRSLTQDDAHVF 386


>gi|302829308|ref|XP_002946221.1| hypothetical protein VOLCADRAFT_102823 [Volvox carteri f.
           nagariensis]
 gi|300269036|gb|EFJ53216.1| hypothetical protein VOLCADRAFT_102823 [Volvox carteri f.
           nagariensis]
          Length = 691

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H  S G   +LP G +  + + + IRE+  +    E+  P + + DLW  SG  D Y + 
Sbjct: 307 HPLSPGSCFFLPHGARIYNTLMSFIREKYWKYEYEEVITPNIYNFDLWRTSGHADHYREN 366

Query: 93  MLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           M   A   +KA  YG  P +      +F +  +SYR LP       L+  D     FGV+
Sbjct: 367 M--FAFEIEKAE-YGLKPMNCPGHCLMFANRTRSYRELP-------LRLAD-----FGVL 411

Query: 151 RSREF 155
              EF
Sbjct: 412 HRNEF 416


>gi|224053571|ref|XP_002297878.1| predicted protein [Populus trichocarpa]
 gi|222845136|gb|EEE82683.1| predicted protein [Populus trichocarpa]
          Length = 690

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 277 LPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 320


>gi|293336836|ref|NP_001169639.1| hypothetical protein LOC100383520 [Zea mays]
 gi|224030583|gb|ACN34367.1| unknown [Zea mays]
          Length = 692

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 276 QKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 321


>gi|302783999|ref|XP_002973772.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
 gi|300158810|gb|EFJ25432.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
          Length = 795

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++   R G   +  P +  A+LW  SG  D Y + M    
Sbjct: 279 GLVFWHPKGALIRHLIEDYWKKVHLRRGYELLYTPHVAKAELWKTSGHLDFYKENMFEQI 338

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
              ++     P +      I++  ++SYR LP  F +++ + R E++
Sbjct: 339 KIEEEFYQLRPMNCPFHIQIYKDRVRSYRELPIKFAELE-QIRGEIK 384


>gi|255514109|gb|EET90372.1| threonyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 560

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G+     +   +R  +      E+S P L +  LW  SG  D Y   M  + D + 
Sbjct: 188 WHPNGRIIYQQLIEFMRGMERLYDYKEISTPALANIALWHVSGHIDYYKDNMFIIDDGSS 247

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           +  +  P +      I++S   SY+ LPF        +R E+     G+ R +E    D 
Sbjct: 248 EFGL-KPMNCPSTILIYKSRRWSYKELPFRTAIFDKLYRREVSGALSGLFRVQELTQDDG 306

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           + F ++ EG +     +     R++   GLK
Sbjct: 307 HIF-VSAEGVEKEITLLLELVKRVYGVFGLK 336


>gi|227872012|ref|ZP_03990397.1| threonine--tRNA ligase [Oribacterium sinus F0268]
 gi|227842155|gb|EEJ52400.1| threonine--tRNA ligase [Oribacterium sinus F0268]
          Length = 627

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 40/173 (23%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  WLP G K    + A  R  Q + G  E+S P + +  LW+ SG +  Y 
Sbjct: 197 MFDETAPGMPYWLPRGWKMYQALLAYSRSVQAKHGYTEISAPLINNKKLWLISGHWAHYI 256

Query: 91  KEMLRL--------ADRNDKAMIYGPTHEEVMTDI------------------------- 117
             M  +        AD +   ++  PT   +   I                         
Sbjct: 257 NNMFMVPGISGWLKADADLSGVLEHPTDASLGEKIVKIQAGSVIYNRENIDTMAAKPMNC 316

Query: 118 ------FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
                 ++   +SY+ LP  + +  +  R E   +  G+ R +EF   D ++F
Sbjct: 317 PNAMITYKRRNRSYKELPIRYSEYDVLHRKEKSGQMNGLFRVQEFRQDDDHTF 369


>gi|167517733|ref|XP_001743207.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778306|gb|EDQ91921.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1312

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 101  DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ 
Sbjct: 1115 EKPIAVRPTSETVMYPAYAKWIQSHRDLPLKLNQWCNVVRWEFKQPTPFLRTREFLWQEG 1174

Query: 161  YS-FDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMR 196
            ++ F   PE  +    ++   Y R++   L +  +P R
Sbjct: 1175 HTAFATKPEADEEVL-EILELYRRVYEELLAVPVVPGR 1211


>gi|328943493|ref|ZP_08240958.1| serine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327491462|gb|EGF23236.1| serine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 427

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E   P L + D    +G+   + +++  ++  ND  +I  PT E ++T++ R  
Sbjct: 188 NEAGFKEWWPPVLTNYDSLFGTGQLPKFDEDLFHVS--NDLYLI--PTAEVMLTNLHRDE 243

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +     LP  +      FR+E     R   G++R  EF   +   F   PE S +    M
Sbjct: 244 VLDASQLPLKYTAFTPCFREEAGSAGRDTRGIIRVHEFDKVEMVKF-AKPEDSMNQLESM 302

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG 203
                +    LGL    +   +G IG
Sbjct: 303 VAEAEKCLQVLGLAYRVVSLCTGDIG 328


>gi|149244764|ref|XP_001526925.1| glycyl-tRNA synthetase 1 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449319|gb|EDK43575.1| glycyl-tRNA synthetase 1 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 652

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF    I   FR+E+ PR G++R REFLM +   F + PE   H
Sbjct: 241 MPFASASIGKSFRNEIAPRAGLLRVREFLMAEIEHF-VDPENKSH 284



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E  +        +G++  P  VAP K+ ++ +    ++ +   +K+
Sbjct: 503 SFGIG--RILYSVFEHQYWARKDEAERGVLSLPPLVAPTKVLIVPLSNSAEL-QPMVKKV 559

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  + +  + V D  V ++ R +  +  
Sbjct: 560 STILKKEKIPFKIDDSGASIGKRYARNDELGTPFGITIDFESVQDESVTLRERDSTKQVR 619

Query: 429 MSLEEVIN 436
            S++ V++
Sbjct: 620 GSIQAVVD 627


>gi|320580638|gb|EFW94860.1| Cytoplasmic and mitochondrial glycyl-tRNA synthase [Pichia angusta
           DL-1]
          Length = 650

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
            +PF    I   FR+E+ PR G++R REFLM +   F + PE   H
Sbjct: 234 KMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPENKSH 278


>gi|290994751|ref|XP_002679995.1| predicted protein [Naegleria gruberi]
 gi|284093614|gb|EFC47251.1| predicted protein [Naegleria gruberi]
          Length = 528

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 320 GAMRVVAAVIESSHDGKGI----------IWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           GA RV+ A +  +++ + +          I PD +AP+K ++  ++          E+IY
Sbjct: 393 GADRVLFAFLYDAYNVEEVPGEEKRVVLKIHPD-LAPYKFAVFPLQKKPVELMSKAEEIY 451

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ++L+ V    +  D+   IG  +   D +G P  + +  + + D+ V ++ R T  +  M
Sbjct: 452 SQLASVVSTDY--DVSSSIGVLYRRHDEIGTPYCITIDHQTLKDNTVTVRDRDTMKQIRM 509

Query: 430 SLEEVINYASHRFSNN 445
           ++ +++    H   NN
Sbjct: 510 NINDIVTNPLHLLKNN 525


>gi|126306853|ref|XP_001367377.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 2
            [Monodelphis domestica]
          Length = 1511

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ +S   T 
Sbjct: 1119 PTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATY 1178

Query: 168  EGSKHSYNKMFVSYLRIFHRL 188
            E +     ++   Y R++  L
Sbjct: 1179 EEAAEEVLQILDLYARVYEEL 1199


>gi|126306851|ref|XP_001367334.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 1
            [Monodelphis domestica]
          Length = 1591

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 108  PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ +S   T 
Sbjct: 1199 PTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATY 1258

Query: 168  EGSKHSYNKMFVSYLRIFHRL 188
            E +     ++   Y R++  L
Sbjct: 1259 EEAAEEVLQILDLYARVYEEL 1279


>gi|242082049|ref|XP_002445793.1| hypothetical protein SORBIDRAFT_07g025840 [Sorghum bicolor]
 gi|241942143|gb|EES15288.1| hypothetical protein SORBIDRAFT_07g025840 [Sorghum bicolor]
          Length = 692

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 276 QKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 321


>gi|254412359|ref|ZP_05026133.1| histidyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196180669|gb|EDX75659.1| histidyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 462

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++ +I++     GI+   S  P ++ ++N+++          ++  +L + G  
Sbjct: 346 IGLTRLMSRLIQA-----GILESFSSTPAQVMVVNMQSD---LMPLYLEVSQKLRQAGIS 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                    +G Q   AD  G PL VI+GS+  +  K  +K+  TG +  +++E++ N  
Sbjct: 398 TITSFDERSVGKQLQQADKRGIPLCVIIGSEEAAAQKCGLKNMRTGEQIAVNIEQLANEV 457

Query: 439 SHRFS 443
           S + +
Sbjct: 458 SKQLA 462


>gi|50287985|ref|XP_446421.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525729|emb|CAG59348.1| unnamed protein product [Candida glabrata]
          Length = 663

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++ E S         + ++ +P  VAP K+ L+ +  H  +      ++
Sbjct: 510 SFGIG--RIIYSIFEHSFWSRPEDTARAVLSFPPLVAPTKVLLVPLSNHKDLA-PVTAQV 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  + +    V D  V ++ R +  +  
Sbjct: 567 SKILRKEQIAFRVDDSGVSIGKRYARNDELGTPFGITIDFDSVKDGSVTLRERDSTKQVR 626

Query: 429 MSLEEVIN 436
            S+E VI 
Sbjct: 627 GSVEAVIK 634


>gi|332184963|ref|ZP_08386712.1| seryl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332014687|gb|EGI56743.1| seryl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 425

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +G+   + +++ R  D   + +I  PT E  +T+I R  I S + LP  F  +   FR E
Sbjct: 208 TGQLPKFAEDLFRTTD--GRWLI--PTAEVSLTNIVREAILSEQELPLRFTALTPCFRSE 263

Query: 143 L----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
                R   G++R  +F   +  S   TPE S   + +M  +   +   LGL    M   
Sbjct: 264 AGAAGRDTRGLIRQHQFDKVEMVSI-TTPEQSDAEHERMTAAAEGVLEALGLPYRRMLLC 322

Query: 199 SGPIGGDLSHEF 210
           +G +G   +  F
Sbjct: 323 TGDMGFSAARTF 334


>gi|317128223|ref|YP_004094505.1| histidyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315473171|gb|ADU29774.1| histidyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 423

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 42/76 (55%)

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++   K+   L K G  V  D + +++ +QF  AD L     +I+G + + +  V +K  
Sbjct: 342 KNVAPKLLHDLRKQGLTVDTDYLNKKMKAQFKAADRLNASFAIILGEQELENDSVMVKAL 401

Query: 422 LTGIREDMSLEEVINY 437
            TG +E++ ++E+++Y
Sbjct: 402 STGEQEEVKVQELVSY 417


>gi|156537409|ref|XP_001606827.1| PREDICTED: similar to glycyl-tRNA synthetase [Nasonia vitripennis]
          Length = 737

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            LPF   QI   FR+E+ PR G++R REF M +   F    + S H ++ +
Sbjct: 322 KLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFCDPSDKSHHKFDSV 372


>gi|325120136|emb|CBZ55690.1| putative threonyl-tRNA synthetase [Neospora caninum Liverpool]
          Length = 608

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 42 WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
          +LP G++ L N+  I+RE+Q      E++ P+L    LW  SG +  Y   M
Sbjct: 19 FLPDGRQLLANIKGILREQQKLLQFQEVATPSLAQTGLWRRSGHWTHYRANM 70


>gi|159112161|ref|XP_001706310.1| Glycyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157434405|gb|EDO78636.1| Glycyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 621

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGSKH 172
           F+  ++  + LPF   Q+   FR+E+ PR  ++R REF   +   F D TP+  +H
Sbjct: 191 FKRGLEQAKQLPFAMAQVGTVFRNEISPRNSLLRVREFEQCEIEHFIDGTPDSFRH 246


>gi|319777143|ref|YP_004136794.1| glycyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|318038218|gb|ADV34417.1| Glycyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 453

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 13/112 (11%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDS---------VAPFKISLINIKAHDQVCRDACEKIY 369
           IG  R++ A++  S+D + +   DS         +AP++++++ +        D   ++Y
Sbjct: 329 IGLDRLMLAILIDSYDEEKLEKDDSRVVLHLHKNLAPYQVAVLPLVKK---LNDKATEVY 385

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +L K G  V +D+ G  IG ++   D +G P  V +    +  + V I+ R
Sbjct: 386 EKLLKAGLSVTYDETG-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDR 436


>gi|227518153|ref|ZP_03948202.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|257081307|ref|ZP_05575668.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|227074396|gb|EEI12359.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|256989337|gb|EEU76639.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
          Length = 423

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  EM  P + +      +G++  + +++ +L D  D  +I  PT E  +T+ + + I  
Sbjct: 190 GYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQD-TDLTLI--PTAEVPLTNYYNNEILD 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKM 177
            ++LP  F  +   FR E     R   G++R  +F   +   F      ++HSY    KM
Sbjct: 247 GKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFS----DAEHSYEELEKM 302

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG 203
             +   I  +LGL    M   +G +G
Sbjct: 303 TNNAEEILQKLGLPYRVMALSTGDMG 328


>gi|189485254|ref|YP_001956195.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287213|dbj|BAG13734.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 598

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G    D +    ++     G   +S P + S +L+  SG   +Y + M    
Sbjct: 220 GLVLWHPKGALLKDIIENYWKKFHLENGYDLLSTPHIASEELFKVSGHLQTYSENMYASM 279

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
           +   K     P +  +   I+++ + SYR LP  + ++   +R E      G++R R F 
Sbjct: 280 EIEGKPYRIKPMNCPMHLMIYKTKLHSYRELPVRYAELGTVYRFEKSGVLHGLLRVRGFT 339

Query: 157 MKDAY 161
             D +
Sbjct: 340 QDDGH 344


>gi|325068893|ref|ZP_08127566.1| threonine--tRNA ligase [Actinomyces oris K20]
          Length = 683

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  TPE +     
Sbjct: 370 IFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQAGEEIR 428

Query: 176 KMFVSYLRIFHRLGL 190
                +L I    GL
Sbjct: 429 AQIDFFLSILKAFGL 443


>gi|20094974|ref|NP_614821.1| histidyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|32130124|sp|Q8TV61|SYH_METKA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19888228|gb|AAM02751.1| Histidyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 421

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           PD V   +  LI +    ++      +I A+L K+G  V  +  G+ I    ++AD L +
Sbjct: 327 PDGVEETRALLIPLVRSGKIW-----EIAAKLRKLGWVVNVEVSGKHIRKALSLADSLEY 381

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              VIVG + + +  V +K+  TG++E++ L+++
Sbjct: 382 DYAVIVGERELKEGYVSVKNLKTGVQEEVPLDQL 415


>gi|29377733|ref|NP_816887.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227555642|ref|ZP_03985689.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229547172|ref|ZP_04435897.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|229550742|ref|ZP_04439467.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255971509|ref|ZP_05422095.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255974459|ref|ZP_05425045.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256618568|ref|ZP_05475414.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256761814|ref|ZP_05502394.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256854941|ref|ZP_05560302.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256957056|ref|ZP_05561227.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256960920|ref|ZP_05565091.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256963942|ref|ZP_05568113.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257078733|ref|ZP_05573094.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|257083965|ref|ZP_05578326.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257087795|ref|ZP_05582156.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|257088440|ref|ZP_05582801.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257418881|ref|ZP_05595875.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257421304|ref|ZP_05598294.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|293384815|ref|ZP_06630660.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388237|ref|ZP_06632756.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294781208|ref|ZP_06746555.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300861572|ref|ZP_07107656.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307268871|ref|ZP_07550236.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307273946|ref|ZP_07555156.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277353|ref|ZP_07558451.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307283995|ref|ZP_07564165.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|307286509|ref|ZP_07566608.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|307289982|ref|ZP_07569908.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|312901342|ref|ZP_07760623.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312902989|ref|ZP_07762178.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|312908857|ref|ZP_07767796.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312952975|ref|ZP_07771831.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|312979500|ref|ZP_07791182.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|46577436|sp|Q82YY9|SYS2_ENTFA RecName: Full=Seryl-tRNA synthetase 2; AltName: Full=Serine--tRNA
           ligase 2; Short=SerRS 2; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 2
 gi|29345201|gb|AAO82957.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227175219|gb|EEI56191.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229304175|gb|EEN70171.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|229307754|gb|EEN73741.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|255962527|gb|EET95003.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255967331|gb|EET97953.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256598095|gb|EEU17271.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256683065|gb|EEU22760.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256709454|gb|EEU24501.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256947552|gb|EEU64184.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256951416|gb|EEU68048.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256954438|gb|EEU71070.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256986763|gb|EEU74065.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256991995|gb|EEU79297.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256995825|gb|EEU83127.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256997252|gb|EEU83772.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257160709|gb|EEU90669.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257163128|gb|EEU93088.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|291077897|gb|EFE15261.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082384|gb|EFE19347.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294451671|gb|EFG20126.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|295112309|emb|CBL30946.1| seryl-tRNA synthetase [Enterococcus sp. 7L76]
 gi|300849033|gb|EFK76786.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306498976|gb|EFM68468.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|306502382|gb|EFM71659.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306503366|gb|EFM72615.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306505987|gb|EFM75159.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306509254|gb|EFM78314.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306514787|gb|EFM83337.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310625295|gb|EFQ08578.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|310629116|gb|EFQ12399.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310633657|gb|EFQ16940.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|311287682|gb|EFQ66238.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311291575|gb|EFQ70131.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315026612|gb|EFT38544.1| seryl-tRNA synthetase [Enterococcus faecalis TX2137]
 gi|315030106|gb|EFT42038.1| seryl-tRNA synthetase [Enterococcus faecalis TX4000]
 gi|315033599|gb|EFT45531.1| seryl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036264|gb|EFT48196.1| seryl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315143579|gb|EFT87595.1| seryl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315148283|gb|EFT92299.1| seryl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315151248|gb|EFT95264.1| seryl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315153733|gb|EFT97749.1| seryl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155041|gb|EFT99057.1| seryl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315158670|gb|EFU02687.1| seryl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315163393|gb|EFU07410.1| seryl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315165668|gb|EFU09685.1| seryl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315168475|gb|EFU12492.1| seryl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315172092|gb|EFU16109.1| seryl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315174225|gb|EFU18242.1| seryl-tRNA synthetase [Enterococcus faecalis TX1346]
 gi|315576187|gb|EFU88378.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315579766|gb|EFU91957.1| seryl-tRNA synthetase [Enterococcus faecalis TX0630]
 gi|315582998|gb|EFU95189.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309A]
 gi|323479199|gb|ADX78638.1| seryl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327536390|gb|AEA95224.1| serine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329577273|gb|EGG58736.1| serine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 423

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  EM  P + +      +G++  + +++ +L D  D  +I  PT E  +T+ + + I  
Sbjct: 190 GYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQD-TDLTLI--PTAEVPLTNYYNNEILD 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKM 177
            ++LP  F  +   FR E     R   G++R  +F   +   F      ++HSY    KM
Sbjct: 247 GKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFS----DAEHSYEELEKM 302

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG 203
             +   I  +LGL    M   +G +G
Sbjct: 303 TNNAEEILQKLGLPYRVMALSTGDMG 328


>gi|329945633|ref|ZP_08293366.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528636|gb|EGF55601.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 683

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  TPE +     
Sbjct: 370 IFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQAGEEIR 428

Query: 176 KMFVSYLRIFHRLGL 190
                +L I    GL
Sbjct: 429 AQIDFFLSILKAFGL 443


>gi|257417382|ref|ZP_05594376.1| seryl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257159210|gb|EEU89170.1| seryl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
          Length = 423

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  EM  P + +      +G++  + +++ +L D  D  +I  PT E  +T+ + + I  
Sbjct: 190 GYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQD-TDLTLI--PTAEVPLTNYYNNEILD 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKM 177
            ++LP  F  +   FR E     R   G++R  +F   +   F      ++HSY    KM
Sbjct: 247 GKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFS----DAEHSYEELEKM 302

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG 203
             +   I  +LGL    M   +G +G
Sbjct: 303 TNNAEEILQKLGLPYRVMALSTGDMG 328


>gi|116251809|ref|YP_767647.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|166223278|sp|Q1MHM2|SYS_RHIL3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|115256457|emb|CAK07541.1| putative seryl-tRNA synthetase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 427

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G IE+S P +   +    + +   + +++ R  D   + +I  PT E  +T++ R  I  
Sbjct: 191 GYIEVSSPLMVRDEAVYGTAQLPKFAEDLFRTTD--GRWLI--PTAEVTLTNLVREEILD 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     E +   + +M   
Sbjct: 247 QEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TDAESAVAEHERMTAC 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 306 AEEVLKRLGLHFRTMTLCTGDMG 328


>gi|308158015|gb|EFO60895.1| Glycyl-tRNA synthetase [Giardia lamblia P15]
          Length = 621

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGSKH 172
           F+  ++  + LPF   Q+   FR+E+ PR  ++R REF   +   F D TP+  +H
Sbjct: 191 FKRGLEQAKQLPFAMAQVGTVFRNEISPRNSLLRVREFEQCEIEHFIDGTPDSFRH 246


>gi|15889049|ref|NP_354730.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|22654115|sp|Q8UEL1|SYT_AGRT5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15156846|gb|AAK87515.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 667

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  W   G +    + A +R     T   E++ P +    LW  SG +  Y + 
Sbjct: 259 QEEGPGVVFWHGKGWRMFQTLTAYMRRRLANTYQ-EVNAPQVLDKSLWETSGHWGWYQEN 317

Query: 93  MLRLA-----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           M  +            + + +     P +      IF+  +KSYR +P    +     R 
Sbjct: 318 MFAVKSAHAFTHPDDKEADQRVFALKPMNCPGHVQIFKHGLKSYREMPVRLAEFGNVHRY 377

Query: 142 ELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           E      G+MR R F   DA+ F  T E       ++    L ++   G   I ++  + 
Sbjct: 378 EASGALHGLMRVRGFTQDDAHVF-CTEEQMAAECLRINDLILSVYEDFGFSEIVVKLSTR 436

Query: 201 P---IGGD 205
           P   +G D
Sbjct: 437 PEKRVGSD 444


>gi|11596253|gb|AAG38542.1|AF309805_7 glycyl tRNA synthetase [Pneumocystis carinii]
          Length = 615

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++IE S+       D   + +P  VAP K  L+ + +++       +K+
Sbjct: 452 SFGIG--RILYSLIEHSYWIRSDDVDRCVLSFPPIVAPVKCLLVPL-SNNSAFDPIIDKL 508

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L ++G     DD    IG +++  D LG P  + V  + V+D  + ++ R T  +  
Sbjct: 509 SFELRQLGISHKVDDSSAAIGRRYSRNDELGTPFGITVDFQTVNDGSLTLRERDTTRQIR 568

Query: 429 MSLEEVI 435
            S +E++
Sbjct: 569 ASEKEIL 575


>gi|326773248|ref|ZP_08232531.1| threonine--tRNA ligase [Actinomyces viscosus C505]
 gi|326636478|gb|EGE37381.1| threonine--tRNA ligase [Actinomyces viscosus C505]
          Length = 683

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  TPE +     
Sbjct: 370 IFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQAGEEIR 428

Query: 176 KMFVSYLRIFHRLGL 190
                +L I    GL
Sbjct: 429 AQIDFFLSILKAFGL 443


>gi|47459403|ref|YP_016265.1| threonyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|47458733|gb|AAT28054.1| threonyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 579

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 44/105 (41%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WL  G K  + +   + E  +R G  E+  P +    L+  SG +  Y  +M    
Sbjct: 200 GFPIWLENGMKIKNAIMKTVLELDDRYGFDEVHTPIVGEQKLYETSGHWAHYKDDMYPPI 259

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
              ++ +I  P        IF S + SYR+LP  F +    FR E
Sbjct: 260 KVENENLILRPMTCPHHILIFNSRLYSYRDLPKRFSEQSWLFRHE 304


>gi|326201903|ref|ZP_08191773.1| histidyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325987698|gb|EGD48524.1| histidyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 442

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           V  ++++++   +IG +F+ AD LG P  ++VG   V     ++K   TG + D+S+E++
Sbjct: 375 VSAEIYFNE--GKIGKKFSYADKLGIPYVIVVGEDEVKSGIFKLKDMATGEQADLSVEQI 432

Query: 435 I 435
           I
Sbjct: 433 I 433


>gi|224064768|ref|XP_002301553.1| predicted protein [Populus trichocarpa]
 gi|222843279|gb|EEE80826.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 70/163 (42%), Gaps = 7/163 (4%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++      F+   G+       S+   + R +  ++    D KG
Sbjct: 233 TGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAY-STRTIGVMVMVHGDDKG 291

Query: 338 IIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQF 392
           ++ P  VA  ++ ++ +   D   Q   DAC      L + G      D  E    G ++
Sbjct: 292 LVLPPKVASVQVIVVPVPYKDADTQGIFDACAATVDTLCEAGIRAE-ADFRENYSPGWKY 350

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +  ++ G PL++ +G K +++++V    R    + D+S + ++
Sbjct: 351 SHWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISRDSLM 393


>gi|209549091|ref|YP_002281008.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065105|sp|B5ZMG0|SYS_RHILW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|209534847|gb|ACI54782.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 427

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+S P +  A+    +G    + +++ +  D   + +I  PT E  +T++ R  I  
Sbjct: 191 GYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD--GRYLI--PTAEVTLTNLVREEILD 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     E +   + +M   
Sbjct: 247 QEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TDAESAVAEHERMTAC 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 306 AEDVLKRLGLHFRTMTLCTGDMG 328


>gi|123449736|ref|XP_001313584.1| threonyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
 gi|121895473|gb|EAY00655.1| threonyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
          Length = 709

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 22/153 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H+ S G   + P G      + ++IR++  +   +E+  P +   DL+  SG +  Y  +
Sbjct: 303 HEWSPGCAFFYPEGCLMYRRLMSMIRQQYLKRQFVEVITPNIFYDDLFKTSGHWAHYRDD 362

Query: 93  MLR---------------------LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           M                       +A +  + M   P +      +FRS ++SY+ +P  
Sbjct: 363 MFHFKVDDGAPTEEELAAQDAKDPVAQKAVREMGMKPMNCPGHCLVFRSKVRSYKEMPIR 422

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
             +  +  R+E      G+ R R F+  DA+ F
Sbjct: 423 MAEFGVLHRNEATGALTGLTRVRRFVQDDAHIF 455


>gi|15965285|ref|NP_385638.1| seryl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|307307875|ref|ZP_07587600.1| seryl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|307317049|ref|ZP_07596490.1| seryl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|30173198|sp|Q92Q22|SYS_RHIME RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|15074465|emb|CAC46111.1| Probable seryl-tRNA synthetase (serine--tRNA ligase) [Sinorhizobium
           meliloti 1021]
 gi|306897137|gb|EFN27882.1| seryl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306901491|gb|EFN32094.1| seryl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 427

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G IE+  P L   D    +G+   +  ++ R  D   + +I  PT E  +T++ R  I  
Sbjct: 191 GYIEVQPPLLVRDDAMYGTGQLPKFSDDLFRTTD--GRWLI--PTAEVPLTNMVREQILD 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     E S   + +M   
Sbjct: 247 GEKLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFNKVELVSI-TDAESSIDEHERMTAC 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 306 AEEVLKRLGLHYRVMTLCTGDMG 328


>gi|586057|sp|P38088|SYG_YEAST RecName: Full=Glycyl-tRNA synthetase 1; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase 1; Short=GlyRS 1;
           Short=GlyRS1
 gi|536402|emb|CAA85078.1| GRS1 [Saccharomyces cerevisiae]
 gi|565058|emb|CAA55623.1| probable transfer RNA-Gly synthetase [Saccharomyces cerevisiae]
          Length = 667

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESS------HDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ +V E S       + + ++ +P  VAP K+ L+ +  H  +      ++
Sbjct: 510 SFGIG--RIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNHKDLV-PVHHEV 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD G  IG ++A  D LG P  V +  +   D  V ++ R +  +  
Sbjct: 567 AKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVR 626

Query: 429 MSLEEVI 435
            S+E VI
Sbjct: 627 GSVENVI 633


>gi|255543218|ref|XP_002512672.1| glycyl-tRNA synthetase, putative [Ricinus communis]
 gi|223548633|gb|EEF50124.1| glycyl-tRNA synthetase, putative [Ricinus communis]
          Length = 686

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 279 LPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 322


>gi|154295615|ref|XP_001548242.1| hypothetical protein BC1G_13078 [Botryotinia fuckeliana B05.10]
 gi|150843958|gb|EDN19151.1| hypothetical protein BC1G_13078 [Botryotinia fuckeliana B05.10]
          Length = 442

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG------------PTHEE 112
           G  E+  PT+    LW +SG +++Y ++M  +  R       G            P +  
Sbjct: 17  GFEEVITPTIYKKSLWEKSGHWENYAEDMYSVVGRGASGETIGGQKGENEEYGLKPMNCP 76

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
               IF S  +SYR +P  +       R+E+     G+ R R F   D + F
Sbjct: 77  GHCLIFASKQRSYREMPVRYTDFSPLHRNEISGALSGLTRVRRFHQDDGHIF 128


>gi|307213760|gb|EFN89098.1| Glycyl-tRNA synthetase [Harpegnathos saltator]
          Length = 741

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           LPF   QI   FR+E+ PR G++R REF M +   F   P    HS
Sbjct: 327 LPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF-CDPSNKSHS 371


>gi|291460058|ref|ZP_06599448.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417399|gb|EFE91118.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 626

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 43/191 (22%)

Query: 16  RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++A+   HK +   L   +  + + G+  WLP G K    +    RE Q R G  E++ P
Sbjct: 177 KEAQERDHKKLGAQLELFLFDETAPGMPYWLPRGWKMYQALLKYSREVQERHGYREIAAP 236

Query: 73  TLQSADLWVESGRYDSYGKEML--------------------RLADRNDK---------A 103
            + +  LW+ SG +  Y   M                      LA++ ++         +
Sbjct: 237 LINNKKLWLISGHWAHYINNMFMVPGVSGWLKADAEIPGILENLAEQGEEPKNVKIQAGS 296

Query: 104 MIYGPTHEEVMTD----------IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           ++Y     + M             ++   +SYR LP  + +  +  R E   +  G+ R 
Sbjct: 297 VLYNRERMDTMAAKPMNCPNAMLTYKRKNRSYRELPIRYSEYDVLHRKEKSGQMNGLFRV 356

Query: 153 REFLMKDAYSF 163
           +EF   D ++F
Sbjct: 357 QEFRQDDDHTF 367


>gi|238810062|dbj|BAH69852.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 466

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 13/112 (11%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDS---------VAPFKISLINIKAHDQVCRDACEKIY 369
           IG  R++ A++  S+D + +   DS         +AP++++++ +        D   ++Y
Sbjct: 342 IGLDRLMLAILIDSYDEEKLEKDDSRVVLHLHKNLAPYQVAVLPLVKK---LNDKATEVY 398

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +L K G  V +D+ G  IG ++   D +G P  V +    +  + V I+ R
Sbjct: 399 EKLLKAGLSVTYDETG-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDR 449


>gi|308189914|ref|YP_003922845.1| glycine--tRNA ligase [Mycoplasma fermentans JER]
 gi|307624656|gb|ADN68961.1| glycine--tRNA ligase [Mycoplasma fermentans JER]
          Length = 446

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 13/112 (11%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDS---------VAPFKISLINIKAHDQVCRDACEKIY 369
           IG  R++ A++  S+D + +   DS         +AP++++++ +    +   D   ++Y
Sbjct: 329 IGLDRLMLAILIDSYDEEKLEKDDSRVVLHLHKNLAPYQVAVLPLV---KKLNDKATEVY 385

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +L K G  V +D+ G  IG ++   D +G P  V +    +  + V I+ R
Sbjct: 386 EKLLKAGLSVTYDETG-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDR 436


>gi|71032677|ref|XP_765980.1| glycyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68352937|gb|EAN33697.1| glycyl-tRNA synthetase, putative [Theileria parva]
          Length = 874

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 14/130 (10%)

Query: 316 SYGIGAMRVVAAVIESSH-----------DGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           S+G+G  R++ +++E ++           + K +    S+AP K S++ + +  +V    
Sbjct: 720 SFGLG--RLIFSILEHAYRVRPVDSNVPEERKYVSLHKSIAPTKCSILPLSS-KEVFEPL 776

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++ ++L  +G     D  G  IG ++A  D +G P  V +  + V+D  V ++ R + 
Sbjct: 777 ISRVQSQLRSLGISHKVDKTGASIGKRYARTDEIGVPFCVTLDFQSVNDDTVTLRERDSM 836

Query: 425 IREDMSLEEV 434
            +  + L++V
Sbjct: 837 QQVRVKLDQV 846


>gi|332993163|gb|AEF03218.1| seryl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 430

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  EM VP L +AD    +G+   +G+++     A    + +   PT E  +T+I R  I
Sbjct: 190 GYDEMYVPFLVNADSLYGTGQLPKFGEDLFHTQPATEEGQGLSLIPTAEVPLTNIARDEI 249

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF-------LMKDAYSFDLTPEGSK 171
              ++LP         FR E     R   G++R  +F       L+K   SFD   E ++
Sbjct: 250 LDEKSLPIKMTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQLVKPEDSFDALEELTQ 309

Query: 172 HS---YNKMFVSYLRIF 185
           H+     K+ + Y ++ 
Sbjct: 310 HAETILQKLELPYRKVL 326


>gi|255716848|ref|XP_002554705.1| KLTH0F11660p [Lachancea thermotolerans]
 gi|238936088|emb|CAR24268.1| KLTH0F11660p [Lachancea thermotolerans]
          Length = 661

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 14/129 (10%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDA--CE 366
           S+GIG  R++ +V E           + ++ +P  VAP K+ L+ +  H  +   A    
Sbjct: 510 SFGIG--RIIYSVFEHVFWSRPEDSARAVLSFPPLVAPTKVLLVPLSNHPDLSSVAHQVS 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K++ R  K+   V  DD G  IG +++  D LG P  V +  +   D  V ++ R +  +
Sbjct: 568 KVF-RKEKIPFKV--DDSGVSIGKRYSRNDELGTPFGVTIDFESAKDGTVTLRERDSTKQ 624

Query: 427 EDMSLEEVI 435
              ++EEV+
Sbjct: 625 VRGTVEEVV 633


>gi|326495766|dbj|BAJ85979.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 734

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           LPF   QI   FR+E+ PR G++R REF M +   F   P    HS
Sbjct: 315 LPFAAAQIGNAFRNEISPRSGLLRVREFTMAEIEHF-CDPSDKSHS 359


>gi|316933337|ref|YP_004108319.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601051|gb|ADU43586.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 693

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG ++ Y + M       + A         P +      IF+  +
Sbjct: 322 EVNAPQILDKVLWETSGHWEWYRENMFAAQSAGEDAEDKRWFALKPMNCPGHVQIFKHGL 381

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 382 KSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF 423


>gi|198438257|ref|XP_002130910.1| PREDICTED: similar to glycyl-tRNA synthetase [Ciona intestinalis]
          Length = 728

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            LPF+  QI + FR+E+ PR G++R REF M +   F
Sbjct: 313 KLPFSAVQIGMSFRNEISPRSGLIRVREFQMGEIEHF 349


>gi|332157838|ref|YP_004423117.1| glycyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331033301|gb|AEC51113.1| glycyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 571

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           ++ KA +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   
Sbjct: 156 KDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMIRLREFTQA 215

Query: 159 DAYSFDLTPEGSKHSY 174
           +   F   P+ ++H +
Sbjct: 216 EVEIF-FNPKEAEHPH 230


>gi|222151515|ref|YP_002560671.1| histidyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|254782335|sp|B9E707|SYH_MACCJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222120640|dbj|BAH17975.1| histidyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 420

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KI A L   G     D +G ++  Q   AD +     V++GS  +  +K++IK   TG  
Sbjct: 346 KIVAELRNAGIRCDMDYLGRKMKGQMKQADRIHATYTVVLGSNEIETNKIQIKAMQTGES 405

Query: 427 EDMSLEEVINY 437
           E + L+++ +Y
Sbjct: 406 ETIKLQDIASY 416


>gi|32564541|ref|NP_871640.1| Glycyl tRNA Synthetase family member (grs-1) [Caenorhabditis
           elegans]
 gi|24942974|gb|AAN65294.1| Glycyl trna synthetase protein 1, isoform b [Caenorhabditis
           elegans]
          Length = 678

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
            LPF   QI L FR+E+ PR G++R REF M +   F + PE
Sbjct: 264 KLPFAAAQIGLGFRNEISPRQGLIRVREFTMCEIEHF-VDPE 304


>gi|45187500|ref|NP_983723.1| ADL373Wp [Ashbya gossypii ATCC 10895]
 gi|44982238|gb|AAS51547.1| ADL373Wp [Ashbya gossypii ATCC 10895]
          Length = 658

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           PF    I   FR+E+ PR G++R REFLM +   F + PE   H
Sbjct: 246 PFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPENKNH 288



 Score = 36.6 bits (83), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 10/113 (8%)

Query: 316 SYGIGAMRVVAAVIESSHDGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ A+ E S   +        + +P  VAP K+ L+ +  +  +     E +
Sbjct: 507 SFGIG--RIIYAIFEHSFWSRPEDAARSVLSFPPLVAPTKVLLVPLSNNADLAEVVTE-V 563

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              L K       DD G  IG ++A  D LG P  + +  + + D  V ++ R
Sbjct: 564 SRVLRKEQIPFKVDDSGVSIGKRYARNDELGTPFGITIDFESIKDGSVTLRER 616


>gi|268572551|ref|XP_002648989.1| C. briggsae CBR-GRS-1 protein [Caenorhabditis briggsae]
          Length = 741

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            LPF   QI L FR+E+ PR G++R REF M +   F + PE  +
Sbjct: 329 KLPFAAAQIGLGFRNEISPRQGLIRVREFTMCEIEHF-VDPEDKR 372


>gi|224368220|ref|YP_002602383.1| SerS [Desulfobacterium autotrophicum HRM2]
 gi|259511665|sp|C0QLD3|SYS_DESAH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|223690936|gb|ACN14219.1| SerS [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 8/155 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
           +N ++    N  G  E   P + + +  + +G+   + +++ ++  +    +   PT E 
Sbjct: 177 INFMLDLHTNEHGYTETLPPFIVNRESLLGTGQLPKFEEDLFKIEGQEYYLI---PTSEV 233

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPE 168
            MT+I+R  + +  NLP  F      FR E     +   G++R  +F   +   +  TPE
Sbjct: 234 PMTNIYRDEVLNEENLPIKFTAYTPCFRSEAGSYGKDTRGLIRQHQFNKVELVKY-TTPE 292

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            S      +  +   +  RLGL    +   SG +G
Sbjct: 293 TSYQELESLLANAETVLKRLGLPYQVVTLCSGDLG 327


>gi|50420561|ref|XP_458817.1| DEHA2D08206p [Debaryomyces hansenii CBS767]
 gi|49654484|emb|CAG86963.1| DEHA2D08206p [Debaryomyces hansenii]
          Length = 474

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 24/164 (14%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I++ +L+  T  +   + G   +LP G +  + +   ++ +Q + G  E+  P +    L
Sbjct: 45  ISNKQLLYTTDSL---TPGSIFFLPHGTRIFNKLVHFMKNQQLKYGFQEVITPLIYKTKL 101

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD-------------------IFRS 120
           W  SG +++Y ++M ++   ND +     +HE    D                   IF  
Sbjct: 102 WEMSGHWENYKEDMFKVVG-NDLSKEEDISHEHNHDDSEGLHDYGLKPMNCPGHCLIFSK 160

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
             +SY  LP  +       R+E      G+ R R F   D + F
Sbjct: 161 FERSYNELPIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF 204


>gi|220929366|ref|YP_002506275.1| histidyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999694|gb|ACL76295.1| histidyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 442

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P KI +I +        +   KI  R   V  ++++++   +IG +F+ AD LG P  +
Sbjct: 347 TPSKILVIPMNGTMGNALEIATKI--RDEGVSAEIYFNE--GKIGKKFSYADKLGIPYVI 402

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +VG   V+    ++K   TG + D+++E++I
Sbjct: 403 VVGEDEVNSGIYKLKDMATGEQTDLTVEQII 433


>gi|218194779|gb|EEC77206.1| hypothetical protein OsI_15722 [Oryza sativa Indica Group]
          Length = 637

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 218 LPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 261


>gi|86749289|ref|YP_485785.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|86572317|gb|ABD06874.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris HaA2]
          Length = 661

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG ++ Y + M       + A         P +      IF+  +
Sbjct: 295 EVNAPQILDKVLWETSGHWEWYRENMFAAQSAGEDAEDKRWFALKPMNCPGHVQIFKHGL 354

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 355 KSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF 396


>gi|242072850|ref|XP_002446361.1| hypothetical protein SORBIDRAFT_06g014710 [Sorghum bicolor]
 gi|241937544|gb|EES10689.1| hypothetical protein SORBIDRAFT_06g014710 [Sorghum bicolor]
          Length = 684

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
            LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 265 KLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 309


>gi|309355899|emb|CAP38159.2| CBR-GARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 787

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            LPF   QI L FR+E+ PR G++R REF M +   F + PE  +
Sbjct: 374 KLPFAAAQIGLGFRNEISPRQGLIRVREFTMCEIEHF-VDPEDKR 417


>gi|308234212|ref|ZP_07664949.1| seryl-tRNA synthetase [Atopobium vaginae DSM 15829]
          Length = 396

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E   P L + D    +G+   + +++  ++  ND  +I  PT E ++T++ R  
Sbjct: 176 NEAGFKEWWPPVLTNYDSLFGTGQLPKFDEDLFHVS--NDLYLI--PTAEVMLTNLHRDE 231

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +     LP  +      FR+E     R   G++R  EF   +   F   PE S +    M
Sbjct: 232 VLDASQLPLKYTAFTPCFREEAGSAGRDTRGIIRVHEFDKVEMVKF-AKPEDSMNQLESM 290

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG 203
                +    LGL    +   +G IG
Sbjct: 291 VAEAEKCLQVLGLAYRVVSLCTGDIG 316


>gi|308459706|ref|XP_003092168.1| CRE-GARS-1 protein [Caenorhabditis remanei]
 gi|308254063|gb|EFO98015.1| CRE-GARS-1 protein [Caenorhabditis remanei]
          Length = 742

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
            LPF   QI L FR+E+ PR G++R REF M +   F + PE
Sbjct: 329 KLPFAAAQIGLGFRNEISPRQGLIRVREFTMCEIEHF-VDPE 369


>gi|218661766|ref|ZP_03517696.1| seryl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 409

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+S P +  A+    +G    + +++ +  D   + +I  PT E  +T++ R  I  
Sbjct: 181 GYTEVSSPLMVRAEAVFGTGSLPKFEEDLFKTTD--GRYLI--PTAEVTLTNLVREEILD 236

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +  S     E +   + +M   
Sbjct: 237 QEELPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT-DAESAIAEHERMTAC 295

Query: 181 YLRIFHRLGLKSIPMRAESGPIG 203
              +  RLGL    M   +G +G
Sbjct: 296 AEEVLKRLGLHFRTMTLCTGDMG 318


>gi|282898000|ref|ZP_06305995.1| Threonyl-tRNA synthetase, class IIa [Raphidiopsis brookii D9]
 gi|281197144|gb|EFA72045.1| Threonyl-tRNA synthetase, class IIa [Raphidiopsis brookii D9]
          Length = 332

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKD 159
           D+  +  P +      I++S ++SYR LP    +    +R E      G+ R R F + D
Sbjct: 15  DQGFVLKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDD 74

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           ++ F +TPE     +  +    L +F  L LK+   R
Sbjct: 75  SHLF-VTPEQLDGEFLNVVDLILTVFRSLQLKNFKAR 110


>gi|296108860|ref|YP_003615809.1| glycyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295433674|gb|ADG12845.1| glycyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 570

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           F+   + +RN LPF   QI   +R+E+ PR GV+R REF   +   F + PE  +H 
Sbjct: 171 FKRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLREFTQAEIEYF-VHPEKKEHE 226



 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +DD G  IG ++  AD +G P  + V  + + D+ V ++ R T  +E + +EE+++Y   
Sbjct: 507 YDDSG-AIGRRYMRADEIGVPFCITVDGQTLKDNTVTVRDRNTREQERVKIEELVDYLRS 565

Query: 441 RFSN 444
           + S+
Sbjct: 566 KISS 569


>gi|73981319|ref|XP_860710.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 3
           [Canis familiaris]
          Length = 304

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGC 377
           +G++  +  V+  S+ GK   WP  ++PF++ +I + A  ++  R+A +++ A  + + C
Sbjct: 175 LGSVERMLGVLAESYGGK---WPLWLSPFQVVVIPVGAEQEEYAREAQQRLQA--AGLVC 229

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D+   D G  +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 230 DLD-ADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSKKTVNIRTR 272


>gi|46204424|ref|ZP_00050025.2| COG0441: Threonyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 394

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHI 122
           E++ P +    LW  SG +  Y + M       ++A         P +      IF+  +
Sbjct: 28  EVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKHGL 87

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR+LP    +  +  R E      G+MR R F   DA+ F
Sbjct: 88  KSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF 129


>gi|310658605|ref|YP_003936326.1| histidyl tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825383|emb|CBH21421.1| histidyl tRNA synthetase [Clostridium sticklandii]
          Length = 420

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (50%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KI   L KVG     D +G+ I +QF  AD L     +++G   +++  V +K      +
Sbjct: 345 KILYDLRKVGISCEKDHVGKSIKAQFKYADKLNSRFTIVLGDDEINNQIVTVKDMSNSTQ 404

Query: 427 EDMSLEEVINY 437
             + L++++NY
Sbjct: 405 TQIKLDDIVNY 415


>gi|224542746|ref|ZP_03683285.1| hypothetical protein CATMIT_01933 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524333|gb|EEF93438.1| hypothetical protein CATMIT_01933 [Catenibacterium mitsuokai DSM
           15897]
          Length = 50

 Score = 38.5 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           DLLG P Q+IVG + + +  VE+K R TG R  ++  + + + ++  S+
Sbjct: 2   DLLGLPWQLIVGRRGLGEGTVELKRRATGERLSLAPHDAVAHIANHLSS 50


>gi|116309463|emb|CAH66534.1| H0209H04.1 [Oryza sativa Indica Group]
          Length = 679

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
            LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 259 KLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 303


>gi|17554996|ref|NP_498093.1| Glycyl tRNA Synthetase family member (grs-1) [Caenorhabditis
           elegans]
 gi|21264524|sp|Q10039|SYG_CAEEL RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
 gi|15718659|gb|AAK21465.2| Glycyl trna synthetase protein 1, isoform a [Caenorhabditis
           elegans]
          Length = 742

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
            LPF   QI L FR+E+ PR G++R REF M +   F + PE
Sbjct: 328 KLPFAAAQIGLGFRNEISPRQGLIRVREFTMCEIEHF-VDPE 368


>gi|48477666|ref|YP_023372.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430314|gb|AAT43179.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 710

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +W +SG YD Y  +M      N +     P +      IF+  I SYR++P  + +    
Sbjct: 335 IWKQSGHYDKYKNDMFLFQLENGEHYGLKPMNCPGHITIFQRGIYSYRDMPVKYCEPGTV 394

Query: 139 FRDELRPRF-GVMRSREFLMKDAYSF 163
           +R E      G+ R R F + D + F
Sbjct: 395 YRYEKSGEMGGLTRPRGFTIDDGHGF 420


>gi|38347165|emb|CAE05155.2| OSJNBa0039C07.11 [Oryza sativa Japonica Group]
          Length = 673

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
            LPF   QI   FR+E+ PR G++R REF + +   F + PE   H
Sbjct: 253 KLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSH 297


>gi|7507632|pir||T16843 hypothetical protein T10F2.1 - Caenorhabditis elegans
          Length = 746

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
            LPF   QI L FR+E+ PR G++R REF M +   F + PE
Sbjct: 332 KLPFAAAQIGLGFRNEISPRQGLIRVREFTMCEIEHF-VDPE 372


>gi|254167083|ref|ZP_04873936.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623939|gb|EDY36501.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 612

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 127/322 (39%), Gaps = 47/322 (14%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SYRNLP   Y++ +  FR E +    G+ R R F M D ++       +   + + +   
Sbjct: 300 SYRNLPLRLYEMAKYAFRREQKGELSGLRRLRAFTMPDMHTLAADMPQAMEEFKRQYEMA 359

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-D 240
           +++    GL+                     L D  E  +  ++DF +     EN DF  
Sbjct: 360 IKVLKDFGLE---------------------LGDY-EVAIRFTRDFYE-----ENKDFIR 392

Query: 241 DIISLNS---IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +++ L +   +++ W   +            DSL +   +S   I+V +   +G  Y   
Sbjct: 393 ELVKLVNRPVLIQMWDERFFYFVLKFEFNFVDSLNKAAALSTVQIDVENAERYGITY--- 449

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES----SHDGKGIIWPDSVAPFKISLIN 353
                +  + K  Y+   S      R++ A++E     +  GK    P  ++P ++ +I 
Sbjct: 450 ---YDENGNEKYPYILHCSPSGAVERILYAMLEKADMDAKKGKKPKLPVWLSPTQVRIIP 506

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +K  D +     E  Y R      D+  DD    +  +   A+    P  V++G K    
Sbjct: 507 VK-DDFIGCSIQEMDYFRSEGFRVDI--DDRDLSVSRKIRDAEKEWIPYIVVIGEKEKEK 563

Query: 414 SKVEIKHRLTGIREDMSLEEVI 435
             + ++ R  G++E M  EE++
Sbjct: 564 DILTVRIRGGGVKE-MKREELL 584


>gi|291514571|emb|CBK63781.1| glycyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 514

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 311 YVQMGSYGIGAM---RVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRD 363
           YV   S G+  M    + AA  E + +G      + +P ++AP K++++ +   D +  +
Sbjct: 368 YVVETSIGVDRMFLQVMSAAYTEQTLEGGDSRVVLKFPPALAPVKVAVLPLVKKDGMP-E 426

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +KI   L K   +V +D+  + +G ++   D +G P  V V  + + D  V I+HR T
Sbjct: 427 VAQKI-VDLLKYDYNVVYDEK-DSVGKRYRRQDAVGTPFCVTVDGQTLEDGTVTIRHRDT 484

Query: 424 GIREDMSLEEV 434
             +E + +E +
Sbjct: 485 MAQERVKIESL 495


>gi|163791200|ref|ZP_02185617.1| seryl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873531|gb|EDP67618.1| seryl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 427

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  EM  P L ++D    +G++  + +++ ++ +  D  +I  PT E  +T+ +R+ I  
Sbjct: 190 GYTEMMTPYLVNSDSMFGTGQFPKFKEDVFQI-EGTDLTLI--PTAEVPLTNYYRNEILK 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  F  +   FR E     R   G++R  +F   +   F   PE S     KM  +
Sbjct: 247 EEQLPVYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFS-KPETSYDELEKMTNN 305

Query: 181 YLRIFHRLGL 190
              +  +L L
Sbjct: 306 AEAVLQKLNL 315


>gi|294886613|ref|XP_002771785.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239875547|gb|EER03601.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 820

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   W   G    + +   IR E    G  E+  P + S  L+ +SG   +Y   M  
Sbjct: 349 SPGSCFWTSHGAVIYNKLVDFIRREYRLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS 408

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +   +     P +      IF   ++SY+ LP       +  R+EL     G+ R R 
Sbjct: 409 M-NIEGETWFLKPMNCPGHCMIFDQKVRSYKELPIRMADFGVLHRNELSGTLSGLTRVRR 467

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 468 FQQDDAHIF 476


>gi|332798643|ref|YP_004460142.1| glycyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696378|gb|AEE90835.1| glycyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 460

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 13/133 (9%)

Query: 319 IGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA R + AV+  ++D + +         + P+ +AP K +++ +   + +   AC K+Y
Sbjct: 330 LGADRAILAVLCDAYDEEEVQGDTRVVLHLKPE-IAPIKCAVLPLSKKEPLEELAC-KVY 387

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K    + +D+ G  IG ++   D +G P  V +    + D+KV I+ R T  ++ +
Sbjct: 388 HDLKKY-YHMEYDNTG-SIGKRYRRQDEIGTPFAVTIDFDSLEDNKVTIRDRDTMQQDRI 445

Query: 430 SLEEVINYASHRF 442
            + +V +Y   + 
Sbjct: 446 EINQVRDYLKEKL 458


>gi|297844762|ref|XP_002890262.1| hypothetical protein ARALYDRAFT_889225 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336104|gb|EFH66521.1| hypothetical protein ARALYDRAFT_889225 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 620

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 16  RDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A+I  H+L  +   +   H  S G   +LP G +  + +    ++E  + G  E+  P
Sbjct: 223 EEAKIYDHRLSGQQQELFFSHPLSPGNCIYLPHGTRVYNKLMEFFKKEYWKMGYTEVITP 282

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI---YGPTHEEVMTDIFRSHIKSYRN-- 127
            + + D W  S   + Y K M +L  +     +   YG  H        + H   +R+  
Sbjct: 283 VIYTMDFWETSRHAEYYQKNMFKLDFQTPGLTVIHNYGIKHMNC-----QGHCLMFRHSV 337

Query: 128 -LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            LP         +++E      G+ R R+F   DA+ F
Sbjct: 338 QLPIKLADFGPLYQNEASEDLSGLTRVRQFQQDDAHIF 375


>gi|117928565|ref|YP_873116.1| threonyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|117649028|gb|ABK53130.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidothermus
           cellulolyticus 11B]
          Length = 685

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-GPTHEEVMTD 116
           R +  + G + ++ P +   DL+  SG   S+ + M    + +     Y  P +  +   
Sbjct: 324 RLQHEKAGYLFVNTPHITKHDLFATSGHLQSFAEGMFPPFELDGGVTYYLKPMNCPMHIL 383

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           I+RS  +SYR LP   ++    +R E      G+ R+R F   DA+ F
Sbjct: 384 IYRSRGRSYRELPMRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIF 431


>gi|303277979|ref|XP_003058283.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460940|gb|EEH58234.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 725

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 78/410 (19%), Positives = 156/410 (38%), Gaps = 53/410 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G    +N+   I+E+       E+  P + + DLW  SG    Y + M  
Sbjct: 314 SPGSCFFLPDGATIYNNLINFIKEKYWEYEYSEVVTPNIYNFDLWKTSGHAAHYKENMFS 373

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                ++  +  P +      +F    +S+R LP       +  R+E      G+ R R 
Sbjct: 374 FNVEKEEFGL-KPMNCPGHCVMFGHRKRSFRELPMRLADFGVLHRNEFSGALHGLTRVRR 432

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F   P+  +H           ++   GL +  M+  + P G           
Sbjct: 433 FQQDDAHIF-CRPDQMEHELVNFMKFLDEVYEVFGL-TYEMKLSTRPEGY---------- 480

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDII--SLNSIVEQWT------APYAATSDVHNEK 266
             GE +V+                 +D +  +LN   ++W       A Y    D+    
Sbjct: 481 -LGELEVW--------------NQAEDALRNALNKSGKEWKLNPGDGAFYGPKIDI---T 522

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +FD+L   +R     +++   F    +++L    T      +   +      +G++  + 
Sbjct: 523 VFDAL--KRRFQCATVQLD--FQLPIRFNLSY-VTENNEPARPIIIHRAI--LGSVERMF 575

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++     GK   W   ++P ++ L+ I    +  R+   ++  +L K G     D+   
Sbjct: 576 AILTEHFAGKYPYW---LSPKQVMLVPI---SEASREYALEVKKQLRKAGHHAQVDETDR 629

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++  +   A L  +   ++VG    ++  V ++ R   +  ++ LEE++ 
Sbjct: 630 KMQKKVREAQLEHWNYILVVGEGEKTNRTVNVRTRDNVVHGEVKLEELMT 679


>gi|126179365|ref|YP_001047330.1| glycyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|125862159|gb|ABN57348.1| glycyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 576

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 109 THEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF---D 164
           T + + TD F   ++ YR+ LPF   QI   +R+E+ PR G++R REF   +A  F   D
Sbjct: 167 TAQGIFTD-FSRLLRFYRDKLPFGAVQIGKSYRNEISPRQGMIRLREFSQAEAEIFVHPD 225

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRL-GLKSIPMRAESGPIGGDLSHEFI 211
                + H Y       L I  +L G +   M   +    G +++E++
Sbjct: 226 RKDHPAFHRYADYTAPLLTIARQLDGQEPAAMTMRAAVDEGVIANEYV 273


>gi|118486938|gb|ABK95302.1| unknown [Populus trichocarpa]
          Length = 498

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++      F+   G+       S+   + R +  ++    D KG
Sbjct: 233 TGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAY-STRTIGVMVMVHGDDKG 291

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFA 393
           ++ P  V+  ++ ++ +    A+ Q   DAC      L + G     D       G +++
Sbjct: 292 LVLPPKVSSVQVIVVPVPFKDANTQGIFDACAATVDTLCEAGIRAEADYRENYSPGWKYS 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             ++ G PL++ +G K +++++V    R    + D+S + +
Sbjct: 352 HWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISCDNL 392


>gi|145532881|ref|XP_001452193.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419876|emb|CAK84796.1| unnamed protein product [Paramecium tetraurelia]
          Length = 428

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           + HQ S G   + P G    + +   +R +    G  E+  P + +A LW  SG YD Y 
Sbjct: 341 LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRGYQEVISPNIFNAQLWKISGHYDKY- 399

Query: 91  KEMLRLADRNDKAMIYGPTHE 111
           KE L   +  ++  I+  THE
Sbjct: 400 KENLFFINMGEEGRIWIKTHE 420


>gi|289193081|ref|YP_003459022.1| histidyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288939531|gb|ADC70286.1| histidyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 413

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           I +I +K   ++ + +   I  +L K G  V  + MG ++      A+  GF   +IVG 
Sbjct: 326 ILIIPVKKDKELIKKSL-IIADKLRKAGKIVELEIMGRKLRKALDYANSRGFKKVIIVGE 384

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           K +++ KV +K  +TG ++ +S++E++N
Sbjct: 385 KELNEGKVTLKDMITGEQKLISIDELVN 412


>gi|294941858|ref|XP_002783275.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239895690|gb|EER15071.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 908

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   W   G    + +   IR E    G  E+  P + S  L+ +SG   +Y   M  
Sbjct: 366 SPGSCFWTSHGAVIYNKLVDFIRREYRLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS 425

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +   +     P +      IF   ++SY+ LP       +  R+EL     G+ R R 
Sbjct: 426 M-NIEGETWFLKPMNCPGHCMIFDQKVRSYKELPIRMADFGVLHRNELSGTLSGLTRVRR 484

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 485 FQQDDAHIF 493


>gi|294941856|ref|XP_002783274.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239895689|gb|EER15070.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 837

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   W   G    + +   IR E    G  E+  P + S  L+ +SG   +Y   M  
Sbjct: 366 SPGSCFWTSHGAVIYNKLVDFIRREYRLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS 425

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           + +   +     P +      IF   ++SY+ LP       +  R+EL     G+ R R 
Sbjct: 426 M-NIEGETWFLKPMNCPGHCMIFDQKVRSYKELPIRMADFGVLHRNELSGTLSGLTRVRR 484

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 485 FQQDDAHIF 493


>gi|90961171|ref|YP_535087.1| seryl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|301299680|ref|ZP_07205935.1| serine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122449395|sp|Q1WVB3|SYS_LACS1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|90820365|gb|ABD99004.1| Seryl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|300852720|gb|EFK80349.1| serine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 20/256 (7%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG K    V   + +E  + G  E+  P +  +     +G++  +  ++ ++   N + M
Sbjct: 169 LGAKLERAVYNFMLDEHAKEGYTEVIPPYIVKSKSMYGTGQFPKFKDQVYQV---NGEDM 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  +    +LP  F  +   FR E     R   G++R  +F   + 
Sbjct: 226 TLIPTAEVPLTNYYREEVIPTEDLPVYFTALSPSFRSEAGSAGRDTRGLIRMHQFNKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGE 218
             +   PE S +   KM  +   I  +LGL    +   +G +G    ++H+  V     +
Sbjct: 286 VKY-TKPEDSYNELEKMTKNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEVWMPAQD 344

Query: 219 T--QVFCSKDFMDFPI-------PSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLF 268
           T  ++    +  DF           EN     + +LN S +       A   +  NE   
Sbjct: 345 TYREISSCSNCEDFQARRARIQYRDENGKLQYVHTLNGSGLAVGRTVAAILENYQNEDGS 404

Query: 269 DSLPENKRVSARGIEV 284
            ++PE  R   +G+EV
Sbjct: 405 VTIPEALRPYMQGLEV 420


>gi|126138470|ref|XP_001385758.1| mitochondrial threonyl tRNA synthetase [Scheffersomyces stipitis
           CBS 6054]
 gi|126093036|gb|ABN67729.1| mitochondrial threonyl tRNA synthetase [Scheffersomyces stipitis
           CBS 6054]
          Length = 449

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 23/164 (14%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I++ +L+  T  +   + G   +LP G +  + +   ++ +Q + G  E+  P +  + L
Sbjct: 20  ISNKQLLYTTDPL---TPGSIFFLPHGTRIFNKLVQFMKNQQTKYGFQEVITPLIYKSKL 76

Query: 80  WVESGRYDSYGKEMLRLA-----------------DRNDKAMIYG--PTHEEVMTDIFRS 120
           W  SG + +Y  +M ++                  D+++    YG  P +      IF  
Sbjct: 77  WETSGHWQNYKDDMFKVVGNDVSKEHDIHNEQYSHDKSEGLHEYGLKPMNCPGHCLIFSK 136

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
             +SY  LP          R+E      G+ R R F   D + F
Sbjct: 137 FDRSYNELPIRLSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF 180


>gi|50553074|ref|XP_503947.1| YALI0E14597p [Yarrowia lipolytica]
 gi|49649816|emb|CAG79540.1| YALI0E14597p [Yarrowia lipolytica]
          Length = 656

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 12/129 (9%)

Query: 316 SYGIGAMRVVAAVIE--------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACE 366
           S+GIG  R++ ++IE         +   KG++ +P  +AP K+ ++ + +  ++     +
Sbjct: 502 SFGIG--RILYSLIEHCFWTRPEDASGAKGVLSFPPRIAPTKVLVVPLSSQKELA-PFTQ 558

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++  +L +       DD    IG ++A  D +G P  + V    V D+ V ++ R +  +
Sbjct: 559 EVSKKLRQARISAKVDDSSASIGKRYARNDEMGTPFGITVDFDTVKDNSVTLRERDSTRQ 618

Query: 427 EDMSLEEVI 435
              S++ VI
Sbjct: 619 VRGSIDAVI 627


>gi|288559908|ref|YP_003423394.1| glycyl-tRNA synthetase GlyS [Methanobrevibacter ruminantium M1]
 gi|288542618|gb|ADC46502.1| glycyl-tRNA synthetase GlyS [Methanobrevibacter ruminantium M1]
          Length = 570

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +  + DK     P   + +  +F+   + ++N LPF   Q+   +R+E+ PR GV+R RE
Sbjct: 148 IGAKGDKVGYMRPETAQGIFILFKRLSRFFKNKLPFGAVQLGKAYRNEISPRQGVIRLRE 207

Query: 155 FLMKDAYSFDLTPEGSKH 172
           F   +A  F L P    H
Sbjct: 208 FTQAEAEIF-LDPRDKTH 224


>gi|288932487|ref|YP_003436547.1| histidyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894735|gb|ADC66272.1| histidyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 409

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KI  RL + G  V  D MG  +  Q + A+ +     VI+G K +      IK  +TG +
Sbjct: 329 KIAERLRENGVKVVVDVMGRNLKKQMSFANDISAEYAVIIGKKELESGTFSIKDLVTGKQ 388

Query: 427 EDMSLEEVIN 436
           + +S EE + 
Sbjct: 389 KSLSFEEAVE 398


>gi|328869633|gb|EGG18010.1| glycyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 683

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           LPF   QI   FR+E+ PR G++R REF M +   F + P    H
Sbjct: 262 LPFAAAQIGNSFRNEIAPRSGLLRVREFTMAEIEHF-VNPHDKSH 305


>gi|241948893|ref|XP_002417169.1| glycyl-tRNA ligase, putative; glycyl-tRNA synthetase, putative
           [Candida dubliniensis CD36]
 gi|223640507|emb|CAX44761.1| glycyl-tRNA ligase, putative [Candida dubliniensis CD36]
          Length = 652

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF    I   FR+E+ PR G++R REFLM +   + + PE   H
Sbjct: 239 MPFASASIGKSFRNEIAPRAGLLRVREFLMAEIEHY-VDPESKSH 282



 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++ E           +G++  P  VAP K+ L+ +  + ++ +   +K+
Sbjct: 501 SFGIG--RILYSIFEHQFWCRPDDADRGVLSLPPIVAPTKVLLVPLSNNSEL-QPIVKKV 557

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD    IG ++A  D LG P  + +    V D  V ++ R +  +  
Sbjct: 558 SQALRKEKIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDDSVTLRERDSTKQVR 617

Query: 429 MSLEEVI 435
            S++E++
Sbjct: 618 GSIQEIV 624


>gi|19114847|ref|NP_593935.1| mitochondrial and cytoplasmic glycine-tRNA ligase Grs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1711632|sp|Q10179|SYG_SCHPO RecName: Full=Putative glycyl-tRNA synthetase; AltName:
           Full=Diadenosine tetraphosphate synthetase; Short=AP-4-A
           synthetase; AltName: Full=Glycine--tRNA ligase;
           Short=GlyRS
 gi|1182050|emb|CAA93301.1| mitochondrial and cytoplasmic glycine-tRNA ligase Grs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 652

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+G+G  R++  ++E ++        +G++ +P S+AP K  ++ +  + +      +K+
Sbjct: 501 SFGLG--RILYVLMEHAYWTRPEDVNRGVLSFPASIAPIKALIVPLSRNAEFA-PFVKKL 557

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L  +G     DD    IG ++A  D LG P  + V  + + +  + ++ R +  +  
Sbjct: 558 SAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFETLQNETITLRERDSTKQVR 617

Query: 429 MSLEEVI 435
            S +EVI
Sbjct: 618 GSQDEVI 624


>gi|238598681|ref|XP_002394671.1| hypothetical protein MPER_05401 [Moniliophthora perniciosa FA553]
 gi|215464082|gb|EEB95601.1| hypothetical protein MPER_05401 [Moniliophthora perniciosa FA553]
          Length = 164

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 10/132 (7%)

Query: 316 SYGIGAMRVVAAVIESSHDGK------GII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+G+G  R++  ++E S   +      G++  P  VAP K+ ++ + A ++       +I
Sbjct: 11  SFGLG--RILYTLLEHSFWSREQDIERGVLSLPPLVAPTKVLIVPLSAKEEF-DPLVNEI 67

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L + G     DD    IG ++A  D LG P  + V    V +  V ++ R T  +  
Sbjct: 68  STKLRRAGIFSRVDDSNTSIGKRYARNDELGTPYGITVDFASVQNRTVTLRERDTMDQRI 127

Query: 429 MSLEEVINYASH 440
            S++EVI   + 
Sbjct: 128 SSIDEVIATVTE 139


>gi|68480224|ref|XP_715922.1| hypothetical protein CaO19.8067 [Candida albicans SC5314]
 gi|68480339|ref|XP_715872.1| hypothetical protein CaO19.437 [Candida albicans SC5314]
 gi|46437515|gb|EAK96860.1| hypothetical protein CaO19.437 [Candida albicans SC5314]
 gi|46437567|gb|EAK96911.1| hypothetical protein CaO19.8067 [Candida albicans SC5314]
          Length = 652

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF    I   FR+E+ PR G++R REFLM +   + + PE   H
Sbjct: 239 MPFASASIGKSFRNEIAPRAGLLRVREFLMAEIEHY-VDPESKSH 282



 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ ++ E           +G++  P  VAP K+ L+ +  + ++ +   +K+
Sbjct: 501 SFGIG--RILYSIFEHQFWCRPDDADRGVLSLPPIVAPTKVLLVPLSNNSEL-QPIVKKV 557

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K       DD    IG ++A  D LG P  + +    V D  V ++ R +  +  
Sbjct: 558 SQALRKEKIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDDSVTLRERDSTKQVR 617

Query: 429 MSLEEVI 435
            S++E++
Sbjct: 618 GSIQEIV 624


>gi|238879014|gb|EEQ42652.1| glycyl-tRNA synthetase 1 [Candida albicans WO-1]
          Length = 652

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +PF    I   FR+E+ PR G++R REFLM +   + + PE   H
Sbjct: 239 MPFASASIGKSFRNEIAPRAGLLRVREFLMAEIEHY-VDPESKSH 282


>gi|307179331|gb|EFN67695.1| Glycyl-tRNA synthetase [Camponotus floridanus]
          Length = 742

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           KA +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +  
Sbjct: 301 KAFLRPETAQGIFVNFKRLLAFNQERLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIE 360

Query: 162 SF 163
            F
Sbjct: 361 HF 362


>gi|116179548|ref|XP_001219623.1| hypothetical protein CHGG_00402 [Chaetomium globosum CBS 148.51]
 gi|88184699|gb|EAQ92167.1| hypothetical protein CHGG_00402 [Chaetomium globosum CBS 148.51]
          Length = 716

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 28/165 (16%)

Query: 15  PRDAEIASHKLMLRTGMIHQH---------------SKGIYSWLPLGQKALDNVNAIIRE 59
           P   ++A+HK  L       H               S G   WLP G +  + +   IRE
Sbjct: 246 PDKKQMAAHKKFLEEAAKRDHRLIGKQQELFYFEESSPGSAMWLPHGMRINNAIMDYIRE 305

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  +    E+  P + +  LW +SG    Y ++M  L D + +     P           
Sbjct: 306 EYWKRDYDEVMTPNMFNVSLWEQSGHLAHYKEDMF-LLDVDKEQFGLKPM---------- 354

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
            +   ++ LP       +  R+E      G+ R R F   DA+ F
Sbjct: 355 -NCPGHKELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF 398


>gi|294619258|ref|ZP_06698733.1| lipase/esterase [Enterococcus faecium E1679]
 gi|291594509|gb|EFF25911.1| lipase/esterase [Enterococcus faecium E1679]
          Length = 78

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  +  +P +Q+ + +VE  R+ SYGKE++  + +  + M+  P  EE  T + ++ IK 
Sbjct: 18  GQADEKIPYIQT-ERFVEKNRHKSYGKEIVFRSSKTQRHMVQIPLMEEASTFLAKNLIKK 76

Query: 125 YR 126
           Y+
Sbjct: 77  YK 78


>gi|58699832|ref|ZP_00374451.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533650|gb|EAL58030.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 236

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +G  +  GT    + LP  + A + GADG K H V +    +G       ++  ++ GK 
Sbjct: 75  IGRSWQCGTLQVDFILPERLGAFYIGADGHKHHPVMLHRAILGTFERFIGILIENYAGKF 134

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            +W   +AP +++++ I            KI   L + G  V  D   E+I  +  +  L
Sbjct: 135 PVW---LAPTQLAILTITNE---ADGYATKISNVLKEQGVRVKTDLTNEKISYKIRLHSL 188

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              P+  IVG   V+   V +++  +  +E  SLE+ I
Sbjct: 189 NKVPILWIVGKNEVTSKTVSVRNLGSERQESFSLEKAI 226


>gi|242373930|ref|ZP_04819504.1| histidyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348484|gb|EES40086.1| histidyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 430

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 37/71 (52%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L K G     D +  +I  Q   AD L     +++G + + ++ ++IKH  +G  
Sbjct: 357 KLLNELRKNGVKADKDYLNRKIKGQMKQADRLNAKYTIVIGDQELENNSIDIKHMASGES 416

Query: 427 EDMSLEEVINY 437
           E + L+++++Y
Sbjct: 417 EKVQLDQLVDY 427


>gi|20088996|ref|NP_615071.1| glycyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|19913849|gb|AAM03551.1| glycyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 612

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           F+   + YR+ LPF   QI   +R+E+ PR GV+R REF   +   F + P   KH
Sbjct: 170 FQRLSRFYRDKLPFGAVQIGKSYRNEIAPRQGVIRLREFTQAECELF-VDPRNKKH 224


>gi|229827512|ref|ZP_04453581.1| hypothetical protein GCWU000182_02901 [Abiotrophia defectiva ATCC
           49176]
 gi|229788450|gb|EEP24564.1| hypothetical protein GCWU000182_02901 [Abiotrophia defectiva ATCC
           49176]
          Length = 462

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 16/134 (11%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDS---------VAPFKISLINIKAHDQVCRDACEKIY 369
           +GA RV  A +  ++D + +   D          +AP K++++ +    +   +  EK++
Sbjct: 333 LGADRVTLAFLCGAYDEEELEGGDVRTVLRFHPFLAPVKVAVLPLS---KKLGEGAEKVF 389

Query: 370 ARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           A LSK   C+  +DD G  IG ++   D +G P  +       +D  V ++ R +  +E 
Sbjct: 390 AELSKDWNCE--YDDRG-AIGKRYRRQDEIGTPFCITYDFDSETDGMVTVRDRDSMEQER 446

Query: 429 MSLEEVINYASHRF 442
           +++ E+ NY   +F
Sbjct: 447 VAISELRNYFREKF 460


>gi|255038651|ref|YP_003089272.1| glycyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254951407|gb|ACT96107.1| glycyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 494

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++APFK +++ +   D +   A  +  A   K      +DD    IG ++   DL+G P 
Sbjct: 389 ALAPFKAAVLPLVKKDGLAEKA--QALANSLKSSFRTVYDD-NAAIGKRYTRQDLIGTPY 445

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            ++V  + + D  V I+HR T  +E + + E+
Sbjct: 446 CIVVDYQTMEDDTVTIRHRDTMEQERVHISEL 477


>gi|294901580|ref|XP_002777422.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239885058|gb|EER09238.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   W   G    + +   IR E    G  E+  P + S  L+ +SG   +Y   M  
Sbjct: 365 SPGSCFWTSHGAVIYNKLVDFIRREYRLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS 424

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           +    +   +  P +      IF   ++SY+ LP       +  R+EL     G+ R R 
Sbjct: 425 MNIEGETWYL-KPMNCPGHCMIFDQKVRSYKELPIRMADFGVLHRNELSGTLSGLTRVRR 483

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 484 FQQDDAHIF 492


>gi|257051518|ref|YP_003129351.1| threonyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256690281|gb|ACV10618.1| threonyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 620

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           HY   G    G  RV+AA++E +        P  ++P ++  I +     +  D CE + 
Sbjct: 471 HYSPSG----GIERVLAALLEDTASMDTPQLPTWLSPTQVRFIPVNPDSHL--DYCEGLV 524

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L         DD  E +G + A A+    P  V+VG + +    + +  R      D+
Sbjct: 525 DELEDADVRADIDDRDESVGKRIAKAETDWVPYYVVVGDREIEGETIGVNVRADDDEIDL 584

Query: 430 SLEEV 434
           +  E+
Sbjct: 585 TPAEL 589


>gi|281355646|ref|ZP_06242140.1| glycyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281318526|gb|EFB02546.1| glycyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 445

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 31/72 (43%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D    A +   T + +  D     + + + LPF   QI   FR+E+ PR    RSREF  
Sbjct: 142 DEEHTAWLRAETCQPIFVDFHSVRVATRQKLPFGIAQIGKAFRNEINPRNFTFRSREFTQ 201

Query: 158 KDAYSFDLTPEG 169
            +   F    EG
Sbjct: 202 MEMEFFCDGEEG 213


>gi|138896141|ref|YP_001126594.1| histidyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166227970|sp|A4IR95|SYH_GEOTN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134267654|gb|ABO67849.1| Histidyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 426

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 38/81 (46%)

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +D   ++   L + G  V  D +G ++ +Q   AD LG     I+G + +      +KH
Sbjct: 341 AKDETVRLVYELRRAGLRVEQDYLGRKMKAQLKAADRLGASFVAIIGDEELEKQTAAVKH 400

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +G + D+ L E+ ++   R
Sbjct: 401 MASGEQTDVPLGELASFLIER 421


>gi|33864733|ref|NP_896292.1| histidyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|39932069|sp|Q7U9Q6|SYH_SYNPX RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33632256|emb|CAE06712.1| histidyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 430

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G+   LP   +    V A+ RE   R+G  E+  P L++ DL+        D  GK
Sbjct: 5   QSLRGMVDLLPETLQCWQAVEAVAREHFRRSGFGEIRTPLLETTDLFCRGIGEGTDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           EM    DR ++A    P   E    + R+ ++
Sbjct: 65  EMYSFTDRGERACTLRP---EGTASVVRAALQ 93


>gi|294948976|ref|XP_002785990.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900098|gb|EER17786.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   W   G    + +   IR E    G  E+  P + S  L+ +SG   +Y   M  
Sbjct: 365 SPGSCFWTSHGAVIYNKLVDFIRREYRLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS 424

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
           +    +   +  P +      IF   ++SY+ LP       +  R+EL     G+ R R 
Sbjct: 425 MNIEGETWYL-KPMNCPGHCMIFDQKVRSYKELPIRMADFGVLHRNELSGTLSGLTRVRR 483

Query: 155 FLMKDAYSF 163
           F   DA+ F
Sbjct: 484 FQQDDAHIF 492


>gi|291522902|emb|CBK81195.1| seryl-tRNA synthetase [Coprococcus catus GD/7]
          Length = 448

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/145 (18%), Positives = 62/145 (42%), Gaps = 7/145 (4%)

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRSHIKSYRNLP 129
           P +      + +G++  +  E+ ++A+  D+  I+   PT E  +  ++R  I +  +LP
Sbjct: 216 PYMLEYQCGLTAGQFPKFADEVYKIANPTDEGRIHYMLPTAEAALASVYRDEILTEADLP 275

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             F+     FR E         G++R  +F   + + + L PE S  ++ ++      + 
Sbjct: 276 KKFFSYTPCFRREAGSYRADERGMVRGHQFNKVEMFQYTL-PEKSDEAFEELVTKAENLV 334

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEF 210
             LG     ++  +G     ++  +
Sbjct: 335 KGLGFHFRTVKLAAGDCSASMARTY 359


>gi|330683923|gb|EGG95691.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 420

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 38/71 (53%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L K G     D +  +I  Q   AD L     +++G + + +++++IK+  TG  
Sbjct: 347 KLLNELRKNGVKADKDYLNRKIKGQMKQADRLNANYTIVIGDQELENNQIDIKNMETGES 406

Query: 427 EDMSLEEVINY 437
           E + L+++++Y
Sbjct: 407 ESIQLDQIVDY 417


>gi|73668741|ref|YP_304756.1| glycyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|72395903|gb|AAZ70176.1| glycyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 607

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           F+   + YR+ LPF   QI   +R+E+ PR GV+R REF   +   F + P   KH
Sbjct: 170 FQRLSRFYRDKLPFGAVQIGKSYRNEIAPRQGVIRLREFTQAECEIF-VDPRNKKH 224


>gi|150014998|ref|YP_001307252.1| glycyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|254781874|sp|A6LPL6|SYG_CLOB8 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|149901463|gb|ABR32296.1| glycyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 463

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 14/128 (10%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPD---------SVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA RV  A +  ++D + +   D         ++APFK +++ +    +   +    IY
Sbjct: 334 LGADRVALAFLIEAYDEEELEGGDVRTVMHLHPALAPFKAAILPLS---KKLSEKSLDIY 390

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A LSK   ++ +D+ G  IG ++   D +G P  + +    + D  V I++R T  +E +
Sbjct: 391 AELSK-KFNLDFDETG-SIGKRYRRQDEIGTPYCITIDFDTLEDESVTIRNRDTMEQERI 448

Query: 430 SLEEVINY 437
            + E+ NY
Sbjct: 449 KISEIENY 456


>gi|288927731|ref|ZP_06421578.1| histidine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330565|gb|EFC69149.1| histidine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 456

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D C  I +++   G  V       ++  Q A A+  G P  V+ G   +S  KV +K+ L
Sbjct: 376 DYCLPIASQVRAAGISVELYPDCAKMKKQMAYANAKGIPFVVLAGESEISQGKVTLKNML 435

Query: 423 TGIREDMSLEEVI 435
           TG ++ +S EE+I
Sbjct: 436 TGDQQLVSAEELI 448


>gi|160915037|ref|ZP_02077250.1| hypothetical protein EUBDOL_01045 [Eubacterium dolichum DSM 3991]
 gi|158432836|gb|EDP11125.1| hypothetical protein EUBDOL_01045 [Eubacterium dolichum DSM 3991]
          Length = 461

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 66/132 (50%), Gaps = 15/132 (11%)

Query: 319 IGAMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +G  R++ AV+  ++D + +         +   +AP K  ++ +    +   D   ++Y 
Sbjct: 333 VGVERMLLAVMCDAYDEEQLENDTRIVMHFHPYLAPIKACVMPLS---KKLGDKAMEVYG 389

Query: 371 RLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +++ V  CD  +DD G  IG ++   D +G P  V +  +  +D  V ++HR +  +E +
Sbjct: 390 KIAHVANCD--YDDAG-SIGKRYRRQDAIGTPFCVTIDFETENDGCVTVRHRDSMEQERV 446

Query: 430 SLEEVINYASHR 441
           ++E++ +Y   R
Sbjct: 447 AIEDLASYIEER 458


>gi|88602971|ref|YP_503149.1| glycyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|88188433|gb|ABD41430.1| glycyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 572

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 118 FRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   ++ YR+ LPF   QI   +R+E+ PR G++R REF   +A  F + PE   H    
Sbjct: 172 FGRLLRFYRDKLPFGTVQIGRSYRNEISPRQGMIRLREFTQAEAEIF-VHPEMKDHPNFA 230

Query: 177 MFVSY 181
            +  Y
Sbjct: 231 RYADY 235


>gi|315026714|gb|EFT38646.1| seryl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 423

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y++L             + +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVYNFL-------------LDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILDAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVRFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|168059486|ref|XP_001781733.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666817|gb|EDQ53462.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 623

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + +S   LPF   QI   +R+E+ PR G MR REF M +   F + P+   H
Sbjct: 201 YYESGNKLPFAAAQIGSAYRNEIAPRQGPMRVREFTMAEIEHF-VNPDDKSH 251


>gi|239637564|ref|ZP_04678536.1| histidyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596782|gb|EEQ79307.1| histidyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 420

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 38/71 (53%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L K G     D +  +I  Q   AD L     +++G + + +++++IK+  TG  
Sbjct: 347 KLLNELRKNGVKADKDYLNRKIKGQMKQADRLNANYTIVIGDQELENNQIDIKNMETGES 406

Query: 427 EDMSLEEVINY 437
           E + L+++++Y
Sbjct: 407 ESIQLDQIVDY 417


>gi|257871364|ref|ZP_05651017.1| seryl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257805528|gb|EEV34350.1| seryl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 425

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 68/341 (19%), Positives = 128/341 (37%), Gaps = 88/341 (25%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A++A  + +   G+  +  + +Y+++ L Q   ++            G  EM  P + 
Sbjct: 154 RGAKVAGSRFVYYKGLGARLERALYNFM-LDQHVYEH------------GYTEMITPYIV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++D    +G++  + +++ +LA+     +   PT E  +T+ +   I     LP  F  +
Sbjct: 201 NSDAMFGTGQFPKFKEDVFQLAE---TGLTLIPTAEVPLTNYYNGEILDLDQLPVYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +          ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKLS----EAEHSYEELEKMTANAEDILQKL 313

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            L    M   +G +G          A T + +V+         IP++ T           
Sbjct: 314 QLPYRVMALSTGDMG-------FSAAKTYDLEVW---------IPAQET----------- 346

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                  Y   S   N + F +    +R   R                     ++  DGK
Sbjct: 347 -------YREISSCSNCEDFQA----RRAMIR---------------------YRDNDGK 374

Query: 309 DHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
            HY+  +   G+   R VAAV+E+  +  G +  P+ + P+
Sbjct: 375 IHYMHTLNGSGLAVGRTVAAVLENYQNEDGSVTIPEVLVPY 415


>gi|260942551|ref|XP_002615574.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850864|gb|EEQ40328.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 453

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN- 100
           +LP G +  + +   ++ +Q + G  E+  P +    LW  SG +D+Y  +M ++   + 
Sbjct: 51  FLPHGTRIFNKLVHFMKNQQLKYGFQEVITPLIYKTKLWEVSGHWDNYKDDMFKVIGNDL 110

Query: 101 ------DKAMI--YG--PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
                 ++A +  YG  P +      IF    +SY  LP          R+E      G+
Sbjct: 111 TKEKDSEEAHLHEYGLKPMNCPGHCLIFSKFERSYNELPIRLSDFSSLHRNEASGALSGL 170

Query: 150 MRSREFLMKDAYSF 163
            R R F   D + F
Sbjct: 171 TRVRRFHQDDGHIF 184


>gi|288561203|ref|YP_003424689.1| seryl-tRNA synthetase SerS [Methanobrevibacter ruminantium M1]
 gi|288543913|gb|ADC47797.1| seryl-tRNA synthetase SerS [Methanobrevibacter ruminantium M1]
          Length = 425

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    G I +  P     ++  E+     + +E L   +  D  +I   T E+ +  + R
Sbjct: 183 ELEERGYIPLQTPFFVKGEVAAETSELGEF-EETLYKVENEDLYLI--ATAEQTLAALHR 239

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I +  +LP  +  +   FR E     +   G+ R  +F   + + F  TPE SK+ ++
Sbjct: 240 DEIINPEDLPMRYCALSTCFRKEAGSHGKDTLGIFRVHQFEKIEQFIFS-TPEESKNEHH 298

Query: 176 KMFVSYLRIFHRLGL 190
           ++      I+ +LGL
Sbjct: 299 RLLEVTEDIYKKLGL 313


>gi|311894343|dbj|BAJ26751.1| putative seryl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 420

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G +EMSVP L + +    +G+   +  ++   R A+R    +   PT E  + ++FR   
Sbjct: 181 GYVEMSVPHLVTRESMTATGQLPKFADDLFGTRAAERE---LFLIPTAEVPLVNLFRGET 237

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S   LP         FR E     R   GV+R  EF   +        + ++H +  + 
Sbjct: 238 LSSAALPLAVTAHTACFRSEAGSYGRDTRGVIRLHEFAKVELVRL-CAAQDARHEHEVLL 296

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIG 203
                   RLGL    +   +G +G
Sbjct: 297 GHAEEALRRLGLHYRVVELRTGDLG 321


>gi|315230062|ref|YP_004070498.1| glycyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315183090|gb|ADT83275.1| glycyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 570

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           ++ K  +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   
Sbjct: 154 KDKKGYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMIRLREFTQA 213

Query: 159 DAYSFDLTPEGSKHSY 174
           +   F   P+ ++H +
Sbjct: 214 EVEIF-FNPKETEHPH 228


>gi|296131564|ref|YP_003638811.1| seryl-tRNA synthetase [Thermincola sp. JR]
 gi|296030142|gb|ADG80910.1| seryl-tRNA synthetase [Thermincola potens JR]
          Length = 423

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 14/184 (7%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L + D  + +G+   + ++M R+ D  D  +I  PT E  +T+I+R  I  
Sbjct: 189 GYTEIFPPFLVNRDSMIGTGQLPKFEEDMFRI-DSVDYFLI--PTAEVPVTNIYRGEILD 245

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +   F   PE S     K+  +
Sbjct: 246 GAQLPLYHVAYSACFRAEAGAHGRDTRGLIRQHQFNKVELVKFT-KPEDSFEELEKLTAN 304

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-----CSKDFMDFPIPSE 235
             ++   LGL    +   +G +G   +  + +       Q +     CS +F+DF     
Sbjct: 305 AEKVLQLLGLPYRVVTLCTGDLGFSSAKTYDIEVWLPSYQAYKEISSCS-NFLDFQARRA 363

Query: 236 NTDF 239
           N  F
Sbjct: 364 NIRF 367


>gi|238063845|ref|ZP_04608554.1| threonyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885656|gb|EEP74484.1| threonyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 676

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 18/195 (9%)

Query: 5   KYFLPILQENPR--------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           K +L +L+E  R        D ++ S    L +G+   H KG      + ++ ++N + I
Sbjct: 259 KAYLKLLEEAARRDHRKLGVDLDLFSFPDELGSGLAVFHPKG-----GIIRREMENYSRI 313

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
             EE    G   ++ P +    L+  SG  D Y   M    +         P +  +   
Sbjct: 314 KHEE---AGYAFVNTPHITKGHLYEVSGHLDWYADGMFPPMEVEGANYYLKPMNCPMHDL 370

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP   ++    +R E      G+ R R     DA+ F  T E       
Sbjct: 371 IFRSRGRSYRELPLRMFEFGTVYRYEKSGVVHGLTRVRGMTQDDAHIF-CTEEQMAGELK 429

Query: 176 KMFVSYLRIFHRLGL 190
            +    L +    GL
Sbjct: 430 SLLAFVLELLRDYGL 444


>gi|162447800|ref|YP_001620932.1| glycyl-tRNA synthetase, class II [Acholeplasma laidlawii PG-8A]
 gi|161985907|gb|ABX81556.1| glycyl-tRNA synthetase, class II [Acholeplasma laidlawii PG-8A]
          Length = 456

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 8/80 (10%)

Query: 344 VAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           +AP+K +++ +  K H Q  R+  E +   L     DV +D+  + IG ++   D +G P
Sbjct: 360 LAPYKAAILPLVRKEHSQKAREIHEMLSENL-----DVVYDET-QNIGKRYRRQDAIGTP 413

Query: 402 LQVIVGSKFVSDSKVEIKHR 421
             + V  + + D  V I+HR
Sbjct: 414 FCITVDHQTMDDDTVTIRHR 433


>gi|29374751|ref|NP_813903.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227555780|ref|ZP_03985827.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257418758|ref|ZP_05595752.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|46577438|sp|Q839Q8|SYS1_ENTFA RecName: Full=Seryl-tRNA synthetase 1; AltName: Full=Serine--tRNA
           ligase 1; Short=SerRS 1; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 1
 gi|29342209|gb|AAO79975.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227175076|gb|EEI56048.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257160586|gb|EEU90546.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 423

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILDAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|256618437|ref|ZP_05475283.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256761947|ref|ZP_05502527.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|257084092|ref|ZP_05578453.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257088576|ref|ZP_05582937.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300862206|ref|ZP_07108286.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307276339|ref|ZP_07557465.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|312903849|ref|ZP_07763021.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256597964|gb|EEU17140.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256683198|gb|EEU22893.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256992122|gb|EEU79424.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256997388|gb|EEU83908.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|295112414|emb|CBL31051.1| seryl-tRNA synthetase [Enterococcus sp. 7L76]
 gi|300848731|gb|EFK76488.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306507004|gb|EFM76148.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|310632793|gb|EFQ16076.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315143211|gb|EFT87227.1| seryl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315160827|gb|EFU04844.1| seryl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315171391|gb|EFU15408.1| seryl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315577010|gb|EFU89201.1| seryl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 423

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILEAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|227431355|ref|ZP_03913408.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352948|gb|EEJ43121.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 435

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 106/295 (35%), Gaps = 69/295 (23%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  EM  P + +      +G+Y  +  +  R+   N     Y PT E  +T+ +
Sbjct: 191 DEHRQEGYTEMITPIVVNDSAMFGTGQYPKFQDDAYRVEGLN---QTYIPTAEVPLTNYY 247

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
                   +LP  F  +   FR E     +   G++R  +F   +   F   PE S    
Sbjct: 248 SGEELPSEDLPIKFTALSPSFRKEAGSAGKDTRGLIRLHQFNKVEMVKF-TKPEDSYEEL 306

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIP 233
            KM +    I  +L                +L +  IVL+ TG+     +K + ++  +P
Sbjct: 307 EKMTLDAENILQKL----------------NLPYHVIVLS-TGDMGFSAAKTYDIEVWMP 349

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +N                   Y   S V N + F          AR +   HI Y    
Sbjct: 350 QQNV------------------YREISSVSNTEDF---------QARRM---HITYRDAD 379

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
             L +  T  G+            G+   R VAA++E+  +  G +  P+ + P+
Sbjct: 380 NKLQLVHTLNGS------------GLAVGRTVAAILENYQNEDGSVTIPEVLRPY 422


>gi|217316857|gb|ACK37834.1| putative glutamyl-prolyl tRNA synthetase [Cosmonotus grayi]
          Length = 121

 Score = 37.4 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  + K+  Y    S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETKNKQYCYQNSWGL-TTRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISL----INIKAHDQ---VCRDACEKIYARLSKVG 376
           G++ P  VA  ++ +    I  K+ DQ      DAC+ + A L + G
Sbjct: 74  GLVLPPQVASIQVIIMPVGITAKSSDQDKANLTDACKTLEAELKEGG 120


>gi|304373385|ref|YP_003856594.1| Threonyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309576|gb|ADM22056.1| Threonyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 581

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      +L L T       +G   WL  G K ++ +   I     + G
Sbjct: 170 FLHILQERKERDHRKLGKELKLFT-FNKLFGQGFPIWLEDGMKIVNKIKEKILFYDKKYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT---HEEVMTDIFRSHI 122
             E+  P      L+  SG +  Y ++M        + +I  P    H  ++ D F+   
Sbjct: 229 FKEVFTPHFGEQKLYEISGHFTHYKEDMFGALVVEGENLIPRPMTCPHHIILFDTFK--- 285

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR LP+   +    +R E      G+ R R  L+ + + F
Sbjct: 286 KSYRELPYRISEQSRLYRYEKSGALTGLERVRSMLLTEGHIF 327


>gi|20093982|ref|NP_613829.1| threonyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|22654113|sp|Q8TXW5|SYT_METKA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19886944|gb|AAM01759.1| Threonyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 624

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 120/329 (36%), Gaps = 66/329 (20%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S R+LP   Y++   FR E      G+ R R F M D ++             + F+   
Sbjct: 302 SRRHLPLKIYELSQSFRLEQSGEVVGLKRLRAFTMPDLHTVC----ADMDEAVEEFLEQA 357

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++   +GL              DL  E+ V+  T E  +   K+                
Sbjct: 358 KLCLEVGL--------------DLGLEYEVVFRTTEKFLKERKEV--------------- 388

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP----- 297
             L  + E     Y     V    L + LPE K      ++   I   G     P     
Sbjct: 389 --LEELAEAMEKAYGDAKPV----LVEVLPERKHYWECKVDFAFIDSLGRPIENPTVQID 442

Query: 298 ------MSATFKGADGKD-HYVQMGSYGIGAM-RVVAAVIESSH-----DGKGIIWPDSV 344
                    T+    G + H V +     G++ RV+ A++E  +     +GK    P  +
Sbjct: 443 VESGRRFGITYADESGDERHPVILHCSPTGSLERVICAILEGQYKRFEQEGKLPTLPTWL 502

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P +  +I +   ++V  +A EK++  L   G  V  DD  E +G +   A     P  +
Sbjct: 503 SPVQARVIPVS--EKVLEEA-EKVFEELKSEGFRVDLDDRDEPVGRKIRDAGEEWVPYVI 559

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           ++G + V    + +      IRE+ +L+E
Sbjct: 560 VIGEEEVKKGTLSVT-----IREESTLKE 583


>gi|229550614|ref|ZP_04439339.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255971641|ref|ZP_05422227.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255974606|ref|ZP_05425192.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256956923|ref|ZP_05561094.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256960726|ref|ZP_05564897.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|257078596|ref|ZP_05572957.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|257081438|ref|ZP_05575799.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257421433|ref|ZP_05598423.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|293384900|ref|ZP_06630738.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388590|ref|ZP_06633091.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294781552|ref|ZP_06746890.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|307269018|ref|ZP_07550381.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307278221|ref|ZP_07559302.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312901191|ref|ZP_07760476.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312908712|ref|ZP_07767652.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312979173|ref|ZP_07790879.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|229304333|gb|EEN70329.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255962659|gb|EET95135.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255967478|gb|EET98100.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256947419|gb|EEU64051.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256951222|gb|EEU67854.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256986626|gb|EEU73928.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256989468|gb|EEU76770.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257163257|gb|EEU93217.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|291077818|gb|EFE15182.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082048|gb|EFE19011.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294451409|gb|EFG19873.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|306505096|gb|EFM74285.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306514687|gb|EFM83239.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310625311|gb|EFQ08594.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311288045|gb|EFQ66601.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311291710|gb|EFQ70266.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315031222|gb|EFT43154.1| seryl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036450|gb|EFT48382.1| seryl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315147058|gb|EFT91074.1| seryl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315156336|gb|EFU00353.1| seryl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315158469|gb|EFU02486.1| seryl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315168211|gb|EFU12228.1| seryl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|323479332|gb|ADX78771.1| seryl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327533948|gb|AEA92782.1| serine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329577577|gb|EGG59011.1| serine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 423

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILDAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|311273541|ref|XP_003133917.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 384

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
             H+ S G   +LP G    + +   IR E  + G  E+  P + ++ LWV SG +  Y 
Sbjct: 293 FFHELSPGSCFFLPKGAYIYNTLIDFIRSEYRKRGFQEVVTPNIYNSRLWVTSGHWQHYS 352

Query: 91  KEML 94
             M 
Sbjct: 353 DNMF 356


>gi|227518019|ref|ZP_03948068.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|307287079|ref|ZP_07567152.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|227074541|gb|EEI12504.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|306501858|gb|EFM71148.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|315151232|gb|EFT95248.1| seryl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315165765|gb|EFU09782.1| seryl-tRNA synthetase [Enterococcus faecalis TX1302]
          Length = 423

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILEAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|315174090|gb|EFU18107.1| seryl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 423

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILDAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|256964070|ref|ZP_05568241.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|307274105|ref|ZP_07555314.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|256954566|gb|EEU71198.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|306509230|gb|EFM78291.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
          Length = 423

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILEAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|225869921|ref|YP_002745868.1| seryl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|254783047|sp|C0M858|SYS_STRE4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225699325|emb|CAW92703.1| seryl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 425

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 8/149 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   L   N    +  PT E  +T+ +
Sbjct: 183 DEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFELDGTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPETSYEEL 298

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            KM  +   I  +L L    +   +G +G
Sbjct: 299 EKMTANAEHILQKLKLPYRVLALCTGDMG 327


>gi|221118771|ref|XP_002157095.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 204

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 11/146 (7%)

Query: 294 YSLP--MSATFKGADGKDHY--VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           + LP   + T+   +G D    V +    +G++  + A++  ++ GK   WP  ++P + 
Sbjct: 48  FQLPERFNLTYVSGEGDDQKRPVIIHRAILGSVERMIAILTENYGGK---WPFWLSPIQA 104

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +I +        +  +K++  L     DV  D  GE +  +   A L+ +   ++VG K
Sbjct: 105 VVIPVSNK---FDEYAQKVHRFLQDFRVDVNLD-AGETLNKKIRNAQLMHYNFILVVGDK 160

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVI 435
            ++ + V ++ R   +  + SLE V+
Sbjct: 161 EMTSNTVNVRTRDNKVHGEKSLETVL 186


>gi|229547035|ref|ZP_04435760.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256855074|ref|ZP_05560435.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|307291565|ref|ZP_07571441.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|229307963|gb|EEN73950.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256709587|gb|EEU24634.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|306497326|gb|EFM66867.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315028722|gb|EFT40654.1| seryl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 423

 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILDAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|303238651|ref|ZP_07325184.1| histidyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593770|gb|EFL63485.1| histidyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 417

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%)

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+  ++ + G     D MG  + +Q   AD LG    +++G   V  +K  +K+ LTG 
Sbjct: 343 QKLVYKIRQEGFSAETDLMGRSVKAQMKYADKLGAVYSLVLGDTEVESNKAVLKNMLTGE 402

Query: 426 REDMSLEEVI 435
            +D+SL+ +I
Sbjct: 403 TKDISLDTLI 412


>gi|257417514|ref|ZP_05594508.1| seryl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257159342|gb|EEU89302.1| seryl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
          Length = 423

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 14/157 (8%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
           N ++ +  N  G  E+  P L ++     +G++  + +++ ++A+ +D  +I  PT E  
Sbjct: 179 NFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVP 235

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEG 169
           +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +   F      
Sbjct: 236 LTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----D 291

Query: 170 SKHSY---NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           ++HSY    KM  +   I  +LGL    +   +G +G
Sbjct: 292 AEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMG 328


>gi|81429415|ref|YP_396416.1| seryl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123563655|sp|Q38UM4|SYS_LACSS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78611058|emb|CAI56111.1| Seryl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 424

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 38/227 (16%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G   +  + +Y+++ L Q A             + G  EM  P L 
Sbjct: 154 RAAKVSGSRFVYYKGAGARLERAVYNFM-LDQHA-------------KEGYEEMITPYLV 199

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + +    +G++  + +++  + +  +  M   PT E  +T+ +R  I     LP  F  +
Sbjct: 200 NGESMFGTGQFPKFTEDVYTMTNEGE-PMTLIPTAEVPLTNFYRDEILDGAQLPIYFTAL 258

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F   PE S +   KM      I   L   
Sbjct: 259 SPAFRSEAGSAGRDTRGLIRMHQFNKVEMVKF-TKPEESFNELEKMTADAENILKAL--- 314

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENT 237
                        +L +  I LA TG+     +K + ++  +P++NT
Sbjct: 315 -------------NLPYHVITLA-TGDASFTSAKTYDIEVWLPAQNT 347


>gi|69248394|ref|ZP_00604730.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|257881174|ref|ZP_05660827.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257884837|ref|ZP_05664490.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257889762|ref|ZP_05669415.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257892302|ref|ZP_05671955.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260559090|ref|ZP_05831276.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|293556785|ref|ZP_06675348.1| lipase/esterase [Enterococcus faecium E1039]
 gi|293563443|ref|ZP_06677892.1| lipase/esterase [Enterococcus faecium E1162]
 gi|293568144|ref|ZP_06679480.1| lipase/esterase [Enterococcus faecium E1071]
 gi|294623607|ref|ZP_06702447.1| lipase/esterase [Enterococcus faecium U0317]
 gi|68194430|gb|EAN08933.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|257816832|gb|EEV44160.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257820675|gb|EEV47823.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257826122|gb|EEV52748.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257828681|gb|EEV55288.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260074847|gb|EEW63163.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|291589134|gb|EFF20946.1| lipase/esterase [Enterococcus faecium E1071]
 gi|291596990|gb|EFF28201.1| lipase/esterase [Enterococcus faecium U0317]
 gi|291601117|gb|EFF31406.1| lipase/esterase [Enterococcus faecium E1039]
 gi|291604704|gb|EFF34189.1| lipase/esterase [Enterococcus faecium E1162]
          Length = 254

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  +  +P +Q+ + +VE  R+ SYGKE++  + +  + M+  P  EE  T + ++ IK 
Sbjct: 194 GQADEKIPYIQT-ERFVEKNRHKSYGKEIVFRSSKTQRHMVQIPLMEEASTFLAKNLIKK 252

Query: 125 YR 126
           Y+
Sbjct: 253 YK 254


>gi|116617315|ref|YP_817686.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272484|sp|Q03ZQ9|SYS_LEUMM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116096162|gb|ABJ61313.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 435

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 69/295 (23%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  EM  P + +      +G+Y  +  +  R+   N     Y PT E  +T+ +
Sbjct: 191 DEHRQEGYTEMITPIVVNDSAMFGTGQYPKFQDDAYRVEGLN---QTYIPTAEVPLTNYY 247

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
                   +LP  F  +   FR E     +   G++R  +F   +   F   PE S    
Sbjct: 248 SGEELPSEDLPIKFTALSPSFRKEAGSAGKDTRGLIRLHQFNKVEMVKF-TKPEDSYEEL 306

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIP 233
            KM +    I  +L                +L +  IVL+ TG+     +K + ++  +P
Sbjct: 307 EKMTLDAENILQKL----------------NLPYHVIVLS-TGDMGFSAAKTYDIEVWMP 349

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +N                   Y   S V N + F +    +R+        HI Y    
Sbjct: 350 QQNV------------------YREISSVSNTEDFQA----RRM--------HITYRDAD 379

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
             L +  T  G+            G+   R VAA++E+  +  G +  P+ + P+
Sbjct: 380 NKLQLVHTLNGS------------GLAVGRTVAAILENYQNEDGSVTIPEVLRPY 422


>gi|304393082|ref|ZP_07375011.1| peptidoglycan binding domain-containing protein [Ahrensia sp.
           R2A130]
 gi|303294847|gb|EFL89218.1| peptidoglycan binding domain-containing protein [Ahrensia sp.
           R2A130]
          Length = 492

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           WD+M   +G +F + ++ GF L+VI G K V D KV +
Sbjct: 159 WDNMPASLGDRFVLVNMAGFELEVIEGEKTVLDMKVVV 196


>gi|257878040|ref|ZP_05657693.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257812268|gb|EEV41026.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
          Length = 254

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  +  +P +Q+ + +VE  R+ SYGKE++  + +  + M+  P  EE  T + ++ IK 
Sbjct: 194 GQADEKIPYIQT-ERFVEKNRHKSYGKEIVFRSSKTQRHMVQIPLMEEASTFLAKNLIKK 252

Query: 125 YR 126
           Y+
Sbjct: 253 YK 254


>gi|299738974|ref|XP_002910140.1| glycyl-tRNA synthetase [Coprinopsis cinerea okayama7#130]
 gi|298403562|gb|EFI26646.1| glycyl-tRNA synthetase [Coprinopsis cinerea okayama7#130]
          Length = 769

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  VAP K+ ++ + A +       E+I +++ K G   + DD    IG ++A  D LG 
Sbjct: 646 PPIVAPTKVFIVPLSAREDF-DPLVEEIASKMRKSGVVPYVDDSSASIGKRYARNDELGT 704

Query: 401 PLQVIVGSKFVSDSKVEIKHRLT 423
           P  + V    + +  V ++ R T
Sbjct: 705 PFGITVDFASIQNRTVTLRERDT 727


>gi|262277223|ref|ZP_06055016.1| seryl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262224326|gb|EEY74785.1| seryl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 422

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
           ++AL N    +  E+N  G  E SVP + +      +G+   + ++  +L   N++ +I 
Sbjct: 175 ERALINFMLDVHTEEN--GYTEYSVPVIVNEKSMYGTGQLPKFKEDQFQL--NNNQWLI- 229

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  +T++    I  Y  LP  F      FR E     +   G++R  +F   +  S
Sbjct: 230 -PTSEVSLTNMVSESIIEYEKLPLRFVSATQCFRAEAGAAGKDTKGMIRQHQFAKVEMVS 288

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             + PE       +M     +I  +L L    M   SG +G
Sbjct: 289 I-IQPEFRFKELERMVECAEKILKKLKLPYRVMLLSSGDMG 328


>gi|261207625|ref|ZP_05922310.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289565136|ref|ZP_06445589.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|294614800|ref|ZP_06694695.1| lipase/esterase [Enterococcus faecium E1636]
 gi|260078008|gb|EEW65714.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289163143|gb|EFD10990.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291592262|gb|EFF23876.1| lipase/esterase [Enterococcus faecium E1636]
          Length = 254

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  +  +P +Q+ + +VE  R+ SYGKE++  + +  + M+  P  EE  T + ++ IK 
Sbjct: 194 GQADEKIPYIQT-ERFVEKNRHKSYGKEIVFRSSKTQRHMVQIPLMEEASTFLAKNLIKK 252

Query: 125 YR 126
           Y+
Sbjct: 253 YK 254


>gi|228982546|ref|ZP_04142805.1| hypothetical protein bthur0002_56790 [Bacillus thuringiensis Bt407]
 gi|228776729|gb|EEM25037.1| hypothetical protein bthur0002_56790 [Bacillus thuringiensis Bt407]
          Length = 195

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 16  RDAEIAS----HKLMLRTGMIHQHSKGIYSWLPLGQ-----KALDNVNAIIREEQNRTGA 66
           RD E+ S    ++ M+R   I  +S GI +WL L +     ++LDNV ++I  ++N  G 
Sbjct: 104 RDGEVWSETKDNRNMIRNHAILVNSNGIETWLNLMKNVVYVESLDNVPSVIPSDENSHGG 163

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKE 92
            E  +P + S    V++ +   Y KE
Sbjct: 164 KEAYLPDIDSDFEEVDASKVIKYIKE 189


>gi|325567669|ref|ZP_08144336.1| serine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325159102|gb|EGC71248.1| serine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 425

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 14/146 (9%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  EM  P + ++     +G++  + +++ +LAD  D  +I  PT E  +T+ ++  I  
Sbjct: 190 GYTEMITPYIVNSQAMFGTGQFPKFKEDVFQLAD-TDLTLI--PTAEVPLTNYYQGEILE 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKM 177
              LP  F  +   FR E     R   G++R  +F   +   F      ++HSY    KM
Sbjct: 247 QEQLPAYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFS----DAEHSYEELEKM 302

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG 203
             +   I  +L L    +   +G +G
Sbjct: 303 TANAEDILQKLNLPYRVLSLCTGDMG 328


>gi|299143683|ref|ZP_07036763.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518168|gb|EFI41907.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 437

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%)

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+ ++L   G +        +I  +F  A+ L  P  ++VG   V   K  +K  +
Sbjct: 359 DEAIKLVSKLRDGGINTIIYTEDAKIAKKFKYANALEVPYTLVVGENEVKTEKYALKDMV 418

Query: 423 TGIREDMSLEEVIN 436
           TG +E++SL E+I+
Sbjct: 419 TGNQEELSLSEIIS 432


>gi|314938053|ref|ZP_07845363.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314941961|ref|ZP_07848822.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314948786|ref|ZP_07852158.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314951804|ref|ZP_07854843.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314991789|ref|ZP_07857247.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314995830|ref|ZP_07860917.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313589934|gb|EFR68779.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313593600|gb|EFR72445.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313596083|gb|EFR74928.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313599213|gb|EFR78058.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313642628|gb|EFS07208.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313644852|gb|EFS09432.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 240

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  +  +P +Q+ + +VE  R+ SYGKE++  + +  + M+  P  EE  T + ++ IK 
Sbjct: 180 GQADEKIPYIQT-ERFVEKNRHKSYGKEIVFRSSKTQRHMVQIPLMEEASTFLAKNLIKK 238

Query: 125 YR 126
           Y+
Sbjct: 239 YK 240


>gi|156844100|ref|XP_001645114.1| hypothetical protein Kpol_538p16 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115771|gb|EDO17256.1| hypothetical protein Kpol_538p16 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 639

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 10/128 (7%)

Query: 316 SYGIGAMRVVAAVIE------SSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKI 368
           S+GIG  R++ A+IE         + + +  +P  +AP ++ ++ + ++ ++        
Sbjct: 486 SFGIG--RIIYALIEHCFWRRQEDEARAVFSFPAKIAPSRVLVVPLSSNKELV-PMTNLT 542

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            + L K       DD    IG ++A  D LG P  + +  +   D  V ++ R + ++  
Sbjct: 543 TSLLKKCKISFKVDDSSVSIGRRYARNDELGTPFAITIDFESKKDETVTLRERDSKLQVR 602

Query: 429 MSLEEVIN 436
            S+E ++N
Sbjct: 603 GSIESIVN 610


>gi|330723715|gb|AEC46085.1| threonyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 581

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      +L L T       +G   WL  G K ++ +   I     + G
Sbjct: 170 FLHILQERKERDHRKLGKELKLFT-FNKLFGQGFPIWLEDGMKIVNKIKEKILFYDKKYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT---HEEVMTDIFRSHI 122
             E+  P      L+  SG +  Y ++M        + +I  P    H  ++ D F+   
Sbjct: 229 FKEVFTPHFGEQKLYEISGHFAHYKEDMFGALVVEGENLIPRPMTCPHHIILFDTFK--- 285

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           KSYR LP+   +    +R E      G+ R R  L+ + + F
Sbjct: 286 KSYRELPYRISEQSRLYRYEKSGALTGLERVRSMLLTEGHIF 327


>gi|167752473|ref|ZP_02424600.1| hypothetical protein ALIPUT_00724 [Alistipes putredinis DSM 17216]
 gi|167659542|gb|EDS03672.1| hypothetical protein ALIPUT_00724 [Alistipes putredinis DSM 17216]
          Length = 518

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYAR---LSKVGCDVFWDDMGEQIGSQFAVADL 397
           P ++AP K++++ +     V +D   ++  R   L K   +V +D+  + +G ++   D 
Sbjct: 409 PAALAPTKVAVLPL-----VKKDGMPEVAQRIVDLLKYDFNVVYDE-KDSVGKRYRRQDA 462

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +G PL V V  + + D+ V ++HR T  +E ++++
Sbjct: 463 IGTPLCVTVDGQTLEDNTVTVRHRDTMQQERVAID 497


>gi|134046484|ref|YP_001097969.1| glycyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|166227935|sp|A4FZX1|SYG_METM5 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|132664109|gb|ABO35755.1| glycyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 575

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 14/135 (10%)

Query: 316 SYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPFKIS---LINIKAHDQVCRDACEKI 368
           SYGI   R+   V+E +     D   + + ++V+P K+    L+N +   ++  D    +
Sbjct: 448 SYGID--RITYCVMEHAFKEDEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMD----L 501

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L + G    +DD G  IG ++   D +G P  V +  + ++DS V I+ R +  +  
Sbjct: 502 KNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCVTIDGETLTDSSVTIRERDSREQFR 560

Query: 429 MSLEEVINYASHRFS 443
           + + EV+ Y   + +
Sbjct: 561 IPINEVVPYIKDKLN 575


>gi|302674551|ref|XP_003026960.1| hypothetical protein SCHCODRAFT_79562 [Schizophyllum commune H4-8]
 gi|300100645|gb|EFI92057.1| hypothetical protein SCHCODRAFT_79562 [Schizophyllum commune H4-8]
          Length = 660

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 316 SYGIGAMRVVAAVIESS-------HDG----KGII-WPDSVAPFKISLINIKAHDQVCRD 363
           S+G+G  R++  ++E S        DG    +G++  P  VAP K+ ++ + A ++    
Sbjct: 502 SFGLG--RILYTLLEHSFWIRAPTKDGERAERGVLSLPPLVAPTKVLIVPLSAKEEFDPL 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E + A+  K G     DD    IG ++A  D LG P  V +    V    + ++ R T
Sbjct: 560 VAE-VSAKFRKAGIFSRVDDSNASIGKRYARNDELGTPYGVTLDFASVQKRTMTLRERDT 618

Query: 424 GIREDMSLEEVI 435
             +   S++EVI
Sbjct: 619 MDQRIGSIDEVI 630


>gi|315574025|gb|EFU86216.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315581976|gb|EFU94167.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 423

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAIFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILDAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|15669189|ref|NP_247994.1| histidyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2501004|sp|Q58406|SYH_METJA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1591660|gb|AAB99003.1| histidyl-tRNA synthetase (hisS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 416

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           I +I +K   ++ + +   I  +L K G  V  + MG ++      A+  GF   +IVG 
Sbjct: 329 ILIIPVKKDKELIKKSL-IIADKLRKAGKIVELEIMGRKLRKALDYANSRGFKKVIIVGE 387

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           K +++ KV +K  +TG ++ + ++E+ N+
Sbjct: 388 KELNEGKVTVKDMITGEQKLIGIDELTNF 416


>gi|156740370|ref|YP_001430499.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|156231698|gb|ABU56481.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 595

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  + P G+     + + +RE Q R G   +    +    L+ +SG Y++Y + M    
Sbjct: 215 GLPLFTPKGEMLRHLMESYVREVQTRYGYQHVWTGHIVKETLYKKSGHYEAYRENMFPPM 274

Query: 98  DRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
             +++ +     +  P+H   MT      I SYR+LP  F +    +R E R    G+ R
Sbjct: 275 IEDEEHVYRLKPMNCPSH---MTLYKEMGIHSYRDLPLRFAEFATLYRYEERGTLTGLTR 331

Query: 152 SREFLMKDAYSF 163
            R     D + F
Sbjct: 332 VRALTQDDCHIF 343


>gi|257087920|ref|ZP_05582281.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995950|gb|EEU83252.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
          Length = 423

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y             N ++ +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVY-------------NFMLDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +D  +I  PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVPLTNYYNNEILDAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY---NKMFVSYLRIFHRL 188
              FR E     R   G++R  +F   +   F      ++HSY    KM  +   I  +L
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVRFS----DAEHSYEELEKMTNNAGDILEKL 313

Query: 189 GLKSIPMRAESGPIG 203
           GL    +   +G +G
Sbjct: 314 GLPYRVITLSTGDMG 328


>gi|147920005|ref|YP_686240.1| threonyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121683020|sp|Q0W3X9|SYT_UNCMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110621636|emb|CAJ36914.1| threonyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 641

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 5/156 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY-GKEMLRL 96
           G   W P G+   + +   +  E  + GA+E+  P +   +        D +  ++   +
Sbjct: 236 GNMRWYPKGRAMKNMLEQFVLSEAAKKGAMEVETPIMYDMEHPTLKKYLDRFPARQYTVI 295

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRF-GVMRSRE 154
           AD+ +  + +     + + +       SYRNLP    ++ +  FR E R    G+ R R 
Sbjct: 296 ADKKNLFLRFAACFGQFLMN--HDMTISYRNLPLKMIELTRYSFRKEQRGELVGLRRLRA 353

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F M D ++     +G+   +   +   +     +G+
Sbjct: 354 FTMPDMHTLCTDMDGAIKEFGDQYEMCINTLDTIGI 389


>gi|42522689|ref|NP_968069.1| glycyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|59798543|sp|Q6MNT9|SYG_BDEBA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|39573885|emb|CAE79062.1| glycyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
          Length = 446

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +APFK++++ +   +++     EK+  +L++   DV +D+  + IG ++   D +G P  
Sbjct: 346 IAPFKVAVLPLSKKEELS-SISEKLRDQLAE-DFDVNYDE-SQSIGKRYRRQDEIGTPFC 402

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           V V    ++D  V ++HR    +E +++ ++  Y + + 
Sbjct: 403 VTVDFDTINDQAVTVRHRDKMTQERVAITQLNAYIAAKL 441


>gi|312952534|ref|ZP_07771401.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310629532|gb|EFQ12815.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315153454|gb|EFT97470.1| seryl-tRNA synthetase [Enterococcus faecalis TX0031]
          Length = 423

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 14/157 (8%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
           N ++ +  N  G  E+  P L ++     +G++  + +++ ++A+ +D  +I  PT E  
Sbjct: 179 NFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAE-SDLTLI--PTAEVP 235

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEG 169
           +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +   F      
Sbjct: 236 LTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFS----D 291

Query: 170 SKHSY---NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           ++HSY    KM  +   I  +LGL    +   +G +G
Sbjct: 292 AEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMG 328


>gi|108803928|ref|YP_643865.1| prolyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|123069165|sp|Q1AX25|SYP_RUBXD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108765171|gb|ABG04053.1| prolyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 476

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL-QSADLWVESGRYDSYGKEMLR 95
           +G ++  P G    + + A +      TG +    P L   + L  E+   + +  E   
Sbjct: 35  RGTFAIRPYGFAIWERIQADLDARFKATGHVNAYFPLLIPESYLTKEAEHVEGFAPECAW 94

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  ++ +   PT E ++ D +R  I SYR+LP    Q     R E+  R   +R
Sbjct: 95  VTVGGDDELEERLAIRPTSESIICDFYRKWIHSYRDLPVLINQWCNVLRWEMVTR-PFLR 153

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           + EFL ++ ++   T E ++    +M   Y   F+ +
Sbjct: 154 TAEFLWQEGHTVHATAEEAREEALRMLNVYRDCFYEV 190


>gi|319892684|ref|YP_004149559.1| Histidyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162380|gb|ADV05923.1| Histidyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 423

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL   G  V  D +  ++  Q   AD L     +++G + +   +V +KH  TG  + M 
Sbjct: 351 RLRHAGISVDKDYLSRKLKGQMKQADRLNATYTIVIGDQELEAGEVAVKHMATGESQTMK 410

Query: 431 LEEVINY 437
            EE+ +Y
Sbjct: 411 FEEIESY 417


>gi|242398937|ref|YP_002994361.1| Glycyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|259511937|sp|C6A317|SYG_THESM RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|242265330|gb|ACS90012.1| Glycyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 570

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQI 135
           AD+W  +  +++Y      +    DK     P T + +  +  R +  +   LPF  +QI
Sbjct: 139 ADVWYFNLMFETY------IGPYKDKKGYLRPETAQGIFVNFKRLNNFARNQLPFGVFQI 192

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
              +R+E+ PR G++R REF   +   F   P+  +H +
Sbjct: 193 GKAYRNEISPRQGMLRLREFSQAEVEIF-FDPKQKEHPH 230


>gi|210623920|ref|ZP_03294129.1| hypothetical protein CLOHIR_02081 [Clostridium hiranonis DSM 13275]
 gi|210153284|gb|EEA84290.1| hypothetical protein CLOHIR_02081 [Clostridium hiranonis DSM 13275]
          Length = 423

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 8/150 (5%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + D +  +G+   + ++M +L           PT E  +T+I R+ I +
Sbjct: 190 GYTEVLPPFMANRDSFCGTGQLPKFEEDMFKLEGLE---YFLVPTAEVPVTNIHRNEILT 246

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP  +      FR E     R   G++R  +F   +   F L PE S     K+ + 
Sbjct: 247 ADQLPIKYCAYTPCFRSEAGSAGRDTRGLVRQHQFNKVELVKFVL-PENSYDELEKLTMD 305

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              I   LGL    ++  +G +G   + +F
Sbjct: 306 AEEILQLLGLPYRRVKICTGDLGFTAAFKF 335


>gi|254167669|ref|ZP_04874520.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289596979|ref|YP_003483675.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623478|gb|EDY36042.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534766|gb|ADD09113.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 612

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 128/324 (39%), Gaps = 51/324 (15%)

Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           SYRNLP   Y++ +  FR E +    G+ R R F M D ++       +   + + +   
Sbjct: 300 SYRNLPLRLYEMAKYAFRREQKGELSGLRRLRAFTMPDMHTLAADMPQAMEEFKRQYEMA 359

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-D 240
           + +    GL+                     L D  E  +  ++DF +     EN DF  
Sbjct: 360 IEVLKDFGLE---------------------LGDY-EVAIRFTRDFYE-----ENKDFIR 392

Query: 241 DIISLNS---IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +++ L +   +++ W   +            DSL +   +S   I+V +   +G      
Sbjct: 393 ELVKLVNRPVLIQMWDERFFYFVLKFEFNFVDSLNKAAALSTVQIDVENAERYGI----- 447

Query: 298 MSATFKGADGKDH--YVQMGSYGIGAMRVVAAVIES----SHDGKGIIWPDSVAPFKISL 351
              T+   +G +   Y+   S      R++ A++E     +  GK    P  ++P ++ +
Sbjct: 448 ---TYYDENGNERYPYILHCSPSGAVERILYAMLEKADMDAKMGKKPKLPVWLSPTQVRI 504

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +K  D +     E  Y R  +   D+  DD    +  +   A+    P  V++G K  
Sbjct: 505 IPVK-DDFIGCSIQEMDYFRSEEFRVDI--DDRDLSVSRKIRDAEKEWIPYIVVIGEKEK 561

Query: 412 SDSKVEIKHRLTGIREDMSLEEVI 435
               + ++ R  G++E M  EE++
Sbjct: 562 EKDILTVRIRGGGVKE-MKREELL 584


>gi|323464278|gb|ADX76431.1| histidyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 423

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL   G  V  D +  ++  Q   AD L     +++G + +   +V +KH  TG  + M 
Sbjct: 351 RLRHAGISVDKDYLSRKLKGQMKQADRLNATYTIVIGDQELEAGEVAVKHMATGESQTMK 410

Query: 431 LEEVINY 437
            EE+ +Y
Sbjct: 411 FEEIESY 417


>gi|195977559|ref|YP_002122803.1| seryl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689799|sp|B4U1C3|SYS_STREM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|195974264|gb|ACG61790.1| seryl-tRNA synthetase SerS [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 425

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 8/149 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + + D    +G+Y  + ++   L   N    +  PT E  +T+ +
Sbjct: 183 DEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFELDGTN---FVLIPTAEVPLTNYY 239

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I   + LP  F  +   FR E     R   G++R  +F   +   F   PE S    
Sbjct: 240 RGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKF-AKPETSYDEL 298

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            KM  +   I  +L L    +   +G +G
Sbjct: 299 EKMTANAEHILQKLKLPYRVLALCTGDMG 327


>gi|119512876|ref|ZP_01631941.1| Histidyl-tRNA synthetase, class IIa [Nodularia spumigena CCY9414]
 gi|119462458|gb|EAW43430.1| Histidyl-tRNA synthetase, class IIa [Nodularia spumigena CCY9414]
          Length = 462

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 313 QMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           QM   GI  G  R+++ ++++     GI+   S  P ++ ++N++A           +  
Sbjct: 338 QMPGVGISIGLTRLISRLLKA-----GILNTLSATPAQVMVVNMQAD---LMPIYLNVSQ 389

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G +V  +     +G QF +AD  G    VI+GS+  +  K  +K   +G + +++
Sbjct: 390 ELRRAGLNVVTNFDKRPLGKQFQLADKQGIQFCVIIGSEEAAAQKSSLKDLKSGEQIEVT 449

Query: 431 LEEVINYASHRF 442
           LE +      R 
Sbjct: 450 LENLAGEIKKRL 461


>gi|54020620|ref|YP_116116.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|53987793|gb|AAV27994.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 579

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      KL L T   +    G   WL  G +  + +   I E     G
Sbjct: 170 FLGILQERQERDHRKIGAKLKLFTFSSY-FGHGFPVWLENGMRIYNKIRQKILEFDRNYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P     +L+  SG    Y  +M +     ++ +I  P        +F   + SY
Sbjct: 229 FKEVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIPRPMTCPHHIILFSQQLFSY 288

Query: 126 RNLPF 130
           RNLP+
Sbjct: 289 RNLPY 293


>gi|256825369|ref|YP_003149329.1| threonyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688762|gb|ACV06564.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Kytococcus
           sedentarius DSM 20547]
          Length = 660

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 2/144 (1%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           ++ P L    L+  SG    Y   M+   D + +A      +  +   I+RS  +SYR L
Sbjct: 308 VTTPHLSKEGLFHTSGHLPYYADGMMPELDDDGQAYRIKAMNCPMHNLIYRSQQRSYREL 367

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +++    +R+E      G+ R R     D++S+ +T E +      +    L +   
Sbjct: 368 PLRYFEFGTVYRNEKSGVLQGLTRVRMITQDDSHSY-VTREQAPGEVKHLLDFVLSLLRD 426

Query: 188 LGLKSIPMRAESGPIGGDLSHEFI 211
            G+    +   +    GD   +FI
Sbjct: 427 FGMDDYYLELSTRAEEGDKKDKFI 450


>gi|71893938|ref|YP_279384.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
 gi|71852065|gb|AAZ44673.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 579

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      KL L T   +    G   WL  G +  + +   I E     G
Sbjct: 170 FLGILQERQERDHRKIGAKLKLFTFSSY-FGHGFPVWLENGMRIYNKIRQKILEFDRNYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P     +L+  SG    Y  +M +     ++ +I  P        +F   + SY
Sbjct: 229 FKEVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIPRPMTCPHHIILFSQQLFSY 288

Query: 126 RNLPF 130
           RNLP+
Sbjct: 289 RNLPY 293


>gi|259048107|ref|ZP_05738508.1| serine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259035168|gb|EEW36423.1| serine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 430

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + IY+++      LD     +  E++  G  EM  P + 
Sbjct: 159 RGAKVSGSRFLYYKGLGARLERAIYNYM------LD-----LHVEKH--GYTEMITPYMV 205

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +      +G++  + +++ +L D  +  +I  PT E  +T+ + + I     LP  F  +
Sbjct: 206 NEQSMYGTGQFPKFKEDVFQLTDERNLTLI--PTAEVPLTNYYANEILDEAQLPIYFTAL 263

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
              FR E     R   G++R  +F   +   F   PE S     KM  +   +   LGL
Sbjct: 264 SPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKF-AKPEDSFDELEKMTDNAEDVLRGLGL 321


>gi|323457093|gb|EGB12959.1| hypothetical protein AURANDRAFT_18779 [Aureococcus anophagefferens]
          Length = 606

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 7/150 (4%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            ++ G   + G  ++      F+  D K   V   S+G+ + R++ A++ +  D  G++ 
Sbjct: 345 ALQSGTSHFLGQNFARAFDVQFQNKDAKRELVWATSWGV-STRLLGALVMTHSDDAGLVL 403

Query: 341 P-----DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           P       VA   I+  N  A  +      + + A    +G  V  D+    + G++F  
Sbjct: 404 PPRVAPVQVAVVPITRKNDDAGTEAVDALVDGLVAECKALGVRVKVDERPNMRPGAKFFE 463

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +  G PL+V VG +  ++  V +  RL G
Sbjct: 464 WERKGVPLRVEVGPRDAAEGVVVVASRLGG 493


>gi|313157062|gb|EFR56492.1| glycine--tRNA ligase [Alistipes sp. HGB5]
          Length = 514

 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P ++AP K++++ +   D +  +  +KI   L K   +V +D+  + +G ++   D +G 
Sbjct: 405 PAALAPVKVAVLPLVKKDGMP-EVAQKI-VDLLKYDYNVVYDEK-DSVGKRYRRQDAVGT 461

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           P  V V  + + D+ V ++HR T  +E ++++++
Sbjct: 462 PFCVTVDGQTLEDNTVTVRHRDTMQQERVAIDKL 495


>gi|315231483|ref|YP_004071919.1| histidyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184511|gb|ADT84696.1| histidyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 437

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + IG  R++  ++ES    KG++    ++P  + ++ I    +V   A E I   L K G
Sbjct: 318 FAIGIERLIP-ILES----KGLLPSFRLSP-DVFVVYIGKELEVKAKAIE-ITQALRKAG 370

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               +D  G ++      AD L  P+ VI+G + +++ K  I+   TG ++ +++E++
Sbjct: 371 IKAEYDLQGRKLRKALEYADKLEIPVVVILGKRDLAEGKATIRDMATGEQKSVAIEKI 428


>gi|312128271|ref|YP_003993145.1| histidyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778290|gb|ADQ07776.1| histidyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 421

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 35/76 (46%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I +RL   G     ++MG  + SQ   AD +G    +I+G   ++    +I++  T   
Sbjct: 344 EIASRLRFEGISTIIEEMGRSLKSQMKYADKIGCQFSIIIGDDEITKGVCKIRNMKTSSE 403

Query: 427 EDMSLEEVINYASHRF 442
           E + +E V  Y   + 
Sbjct: 404 EIVEIENVCQYLKEKL 419


>gi|223044100|ref|ZP_03614139.1| histidyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442494|gb|EEE48600.1| histidyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 420

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 36/71 (50%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L K       D +  +I  Q   AD L     +++G + + ++ + IK+  TG  
Sbjct: 347 KLLNDLRKNDVKADKDYLNRKIKGQMKQADRLNAKYTIVIGDQELENNSIAIKNMTTGES 406

Query: 427 EDMSLEEVINY 437
           E++ L+++INY
Sbjct: 407 ENIQLDQLINY 417


>gi|145348306|ref|XP_001418593.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578823|gb|ABO96886.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 564

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G      +    ++     G   +  P +   +LW  SG  D Y + M +  
Sbjct: 187 GLVFWHPKGAHMRHMIETYWKDLHLARGYELLYSPHVARQELWKTSGHSDFYSENMYQPI 246

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFL 156
              D+     P +      +++    SY++LP  + ++   +R E      G+ R R F 
Sbjct: 247 KVEDEMYQLKPMNCPFHIVVYQDGYYSYKDLPIRWAELGTVYRYERSGTMHGLFRVRGFT 306

Query: 157 MKDAYSFDL 165
             DA+ F L
Sbjct: 307 QDDAHIFCL 315


>gi|314933795|ref|ZP_07841160.1| histidine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653945|gb|EFS17702.1| histidine--tRNA ligase [Staphylococcus caprae C87]
          Length = 420

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 36/71 (50%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L K       D +  +I  Q   AD L     +++G + + ++ + IK+  TG  
Sbjct: 347 KLLNDLRKNDVKADKDYLNRKIKGQMKQADRLNAKYTIVIGDQELENNSIAIKNMTTGES 406

Query: 427 EDMSLEEVINY 437
           E++ L+++INY
Sbjct: 407 ENIQLDQLINY 417


>gi|194467495|ref|ZP_03073482.1| seryl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194454531|gb|EDX43428.1| seryl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 435

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           +L LG +    V   + +E  + G  E+  P + +AD    +G++  + + + ++   N 
Sbjct: 166 YLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFPKFKEGVYQV---NG 222

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           + M   PT E  +T+ +R  +     LP     +   FR E     R   G++R  +F  
Sbjct: 223 EDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAGRDTRGLIRMHQFNK 282

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            +   +   PE S     KM  +   I  +L L
Sbjct: 283 VEMVKY-TKPENSWDELEKMTANAENILKKLNL 314


>gi|148543336|ref|YP_001270706.1| seryl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184152746|ref|YP_001841087.1| seryl-tRNA synthetase [Lactobacillus reuteri JCM 1112]
 gi|227364408|ref|ZP_03848498.1| seryl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325683608|ref|ZP_08163124.1| serine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|166987314|sp|A5VHP5|SYS_LACRD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229890222|sp|B2G575|SYS_LACRJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148530370|gb|ABQ82369.1| seryl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183224090|dbj|BAG24607.1| seryl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070501|gb|EEI08834.1| seryl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324977958|gb|EGC14909.1| serine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 435

 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           +L LG +    V   + +E  + G  E+  P + +AD    +G++  + + + ++   N 
Sbjct: 166 YLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFPKFKEGVYQV---NG 222

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           + M   PT E  +T+ +R  +     LP     +   FR E     R   G++R  +F  
Sbjct: 223 EDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAGRDTRGLIRMHQFNK 282

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            +   +   PE S     KM  +   I  +L L
Sbjct: 283 VEMVKY-TKPENSWDELEKMTANAENILKKLNL 314


>gi|314936256|ref|ZP_07843603.1| histidine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654875|gb|EFS18620.1| histidine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 425

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 40/78 (51%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L K G     D +  +I  Q   AD L     +++G + ++++K+++K   TG  
Sbjct: 347 KLLNDLRKHGVKADKDYLNRKIKGQMKQADRLNAKYTIVIGDQELNNNKIDVKEMSTGET 406

Query: 427 EDMSLEEVINYASHRFSN 444
           + + L+EV+++ +    N
Sbjct: 407 KTIQLDEVVSFFNKEKEN 424


Searching..................................................done


Results from round 2




>gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040547|gb|ACT57343.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 449

 Score =  591 bits (1524), Expect = e-167,   Method: Composition-based stats.
 Identities = 449/449 (100%), Positives = 449/449 (100%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE
Sbjct: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS
Sbjct: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS
Sbjct: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD
Sbjct: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA
Sbjct: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV
Sbjct: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH
Sbjct: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           RLTGIREDMSLEEVINYASHRFSNNRPVL
Sbjct: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449


>gi|227821637|ref|YP_002825607.1| prolyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227340636|gb|ACP24854.1| prolyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 501

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 279/438 (63%), Positives = 354/438 (80%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLRTGMI Q S GIYSWLPLG++ LD VNAIIREE
Sbjct: 60  MRLSRYFMPILKENPKEAEIVSHRLMLRTGMIRQQSAGIYSWLPLGKRVLDKVNAIIREE 119

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GA+E+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 120 QNRSGAVELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 179

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL  EG++H+YNKMF +
Sbjct: 180 SVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDREGAEHAYNKMFAA 239

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGG+LSHEFI+LADTGE++V+C KDF+ F IP ++T+FD
Sbjct: 240 YLRTFDRMGLRAIPMRADTGPIGGNLSHEFIILADTGESEVYCHKDFLGFDIPGKDTNFD 299

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I ++WT+ YAATS++H+E  FD++ E ++VSARGIEVGHIFYFGTKYS  M A
Sbjct: 300 DVAGLKAIFDKWTSRYAATSEMHDEAAFDAISEGEKVSARGIEVGHIFYFGTKYSEAMGA 359

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF   +IN+K  D  
Sbjct: 360 KVLGPDGKEHIVHMGSYGIGPTRLVPAIIEASHDENGIIWPKSVAPFDAVVINMKTGDAA 419

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC  +Y+ L K G DV  DD  ++ G++FA ADL+G P+Q+IVG + +++ +VE+K 
Sbjct: 420 CDAACGTLYSDLGKAGFDVLLDDTDDRAGAKFATADLIGVPVQIIVGPRSIANGEVEVKD 479

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 480 RKTGERETMTVEAAINKL 497


>gi|222148295|ref|YP_002549252.1| prolyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735283|gb|ACM36246.1| prolyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 498

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 281/439 (64%), Positives = 356/439 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLRTGMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 59  MRLSRYFLPILKENPKEAEIVSHRLMLRTGMIRQQSQGIYSWLPLGKRVLDKVNAIIRQE 118

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQSA+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 119 QNRAGAVELLMPTLQSAELWQESGRYDDYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 178

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMF +
Sbjct: 179 YVKSYKSLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLTKESAIHSYNKMFAA 238

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IPS +TDFD
Sbjct: 239 YLRTFDRLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPSADTDFD 298

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I + WT+ YAATS++H+E  + ++P++ ++SARGIEVGHIFYFGTKYS PM A
Sbjct: 299 DVAGLQAIFDDWTSHYAATSEMHDEAAYGAMPDDAKISARGIEVGHIFYFGTKYSEPMGA 358

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF   +IN+KA D  
Sbjct: 359 KVQGPDGKEHLVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDAIIINMKAGDAG 418

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC+ +Y  L+K G DV  DD  ++ G++FA+ADL+G P QVIVG + V++ +VE+K+
Sbjct: 419 CDGACDTVYGALTKAGKDVLLDDTDDRAGAKFALADLIGVPYQVIVGPRSVANGEVELKN 478

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE M++E  IN  +
Sbjct: 479 RKTGERETMTIEAAINRLA 497


>gi|222085595|ref|YP_002544125.1| prolyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723043|gb|ACM26199.1| prolyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 475

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/439 (65%), Positives = 363/439 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VN IIREE
Sbjct: 36  MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNKIIREE 95

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 96  QNRSGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 155

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG+  +YNKMF +
Sbjct: 156 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTQEGAVIAYNKMFAA 215

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF++F IPSE+T+FD
Sbjct: 216 YLRTFDRLGLRAIPMRADTGPIGGELSHEFIILADTGESEVFCHKDFVNFDIPSEDTNFD 275

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  I ++WT+ YAATS++H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 276 DVAGLKGIFDKWTSLYAATSEMHDEATFNAIPEGERLSARGIEVGHIFYFGTKYSEPMGA 335

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+K+ DQ 
Sbjct: 336 KVQGPDGKEHAVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVVINMKSGDQA 395

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE IYA LSK G DV +DD  ++ G++FA ADL+G P+Q+IVG + ++  +VE+K 
Sbjct: 396 CDAACETIYAALSKAGKDVLFDDRDDRAGTKFATADLIGVPVQIIVGPRSIAGGEVEVKD 455

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE M++E  IN  +
Sbjct: 456 RKTGARETMTVEAAINKLA 474


>gi|15965039|ref|NP_385392.1| prolyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|307301111|ref|ZP_07580880.1| prolyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|307317844|ref|ZP_07597282.1| prolyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|81854328|sp|Q92QN2|SYP_RHIME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15074218|emb|CAC45865.1| Probable prolyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|306896606|gb|EFN27354.1| prolyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306904066|gb|EFN34652.1| prolyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 442

 Score =  547 bits (1411), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/438 (63%), Positives = 354/438 (80%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLRTGM+ Q S GIY+WLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRTGMVRQQSAGIYTWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMF +
Sbjct: 121 YVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDRAGAEHAYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E+T+FD
Sbjct: 181 YLRTFDRMGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFLGFDIPGEDTNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I ++WT+ YAATS++H+E  F ++ E +R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 DVAGLKTIFDKWTSRYAATSEMHDEAAFGAIAEGERLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP  +APF + +IN+K  D+ 
Sbjct: 301 KVLGPDGKEHTVHMGSYGIGPTRLVPAIIEASHDDNGIIWPKGIAPFDVVVINMKTGDEA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC K+Y+ L K G DV  DD  E+ G +FA ADL+G P+QVIVG + +++ +VE+K 
Sbjct: 361 CDAACGKVYSDLGKAGFDVLLDDTDERAGGKFATADLIGVPVQVIVGPRSIANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTVEAAINKL 438


>gi|241204106|ref|YP_002975202.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857996|gb|ACS55663.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 440

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 288/438 (65%), Positives = 361/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG LSHEFI+LADTGE++VFC KDF+DF IP  +TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGKLSHEFIILADTGESEVFCHKDFVDFDIPGAHTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|162329642|ref|YP_469149.2| prolyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|114152238|sp|Q2K9R4|SYP_RHIEC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 440

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 288/438 (65%), Positives = 360/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP ENTDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPGENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLKAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+K  DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKVGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALKKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|327194827|gb|EGE61661.1| prolyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 440

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 288/438 (65%), Positives = 364/438 (83%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRINDRQERPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+DF IP E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVDFDIPGESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|190891305|ref|YP_001977847.1| prolyl-tRNA synthetase [Rhizobium etli CIAT 652]
 gi|226701323|sp|B3PW17|SYP_RHIE6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|190696584|gb|ACE90669.1| prolyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 440

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 287/438 (65%), Positives = 363/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQERPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+DF IP E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVDFDIPGESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIE GHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEAGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|116251485|ref|YP_767323.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|114152239|sp|Q1MIJ6|SYP_RHIL3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115256133|emb|CAK07214.1| putative prolyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 440

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 287/438 (65%), Positives = 361/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT E ++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREAAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG LSHEFI+LADTGE++VFC KDF+DF +P E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGKLSHEFIILADTGESEVFCHKDFVDFDVPGEHTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA LSK G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALSKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|150396141|ref|YP_001326608.1| prolyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166980159|sp|A6U7Z3|SYP_SINMW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150027656|gb|ABR59773.1| prolyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 442

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 280/438 (63%), Positives = 355/438 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLRTGMI Q S GIY+WLPLG++ LD VNA+IREE
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRTGMIRQQSAGIYTWLPLGKRVLDKVNAVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+Y +MF +
Sbjct: 121 YVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDRAGAEHAYKRMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E+T+FD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFLGFDIPGEDTNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ S+N+I E+WT+ YAATS++H E  FD++PE +R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 DVASMNAIFEKWTSRYAATSEMHEEAAFDAIPEGERLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP  +APF I +IN+K  D  
Sbjct: 301 KVLGPDGKEHTVHMGSYGIGPTRLVPAIIEASHDDNGIIWPKGIAPFDIVVINMKTGDDA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC ++Y+ L K G DV  DD  E+ G +FA AD++G P+QVIVG + +++ +VE+K 
Sbjct: 361 CDTACGRLYSDLGKAGFDVLLDDTDERAGGKFATADIIGVPVQVIVGPRSIANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTVEAAINKL 438


>gi|209548882|ref|YP_002280799.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226701324|sp|B5ZYN2|SYP_RHILW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|209534638|gb|ACI54573.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 440

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 286/438 (65%), Positives = 359/438 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP + TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDDRTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 SVDGLKAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPFQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|159184694|ref|NP_354297.2| prolyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|81848693|sp|Q8UFV9|SYP_AGRT5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159139984|gb|AAK87082.2| prolyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 440

 Score =  541 bits (1394), Expect = e-152,   Method: Composition-based stats.
 Identities = 284/438 (64%), Positives = 358/438 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q S GIYSWLPLG++ LD VN IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGKRVLDKVNKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ+A+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELLMPTLQTAELWQESGRYDDYGKEMLRIKDRQDRQMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMFV+
Sbjct: 121 YVKSYKNLPLNLYHIQLKFRDEVRPRFGTMRSREFLMKDAYSFDLTKEDAIHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IP+E+TDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPAESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  + ++WTA YAATS++H++  +D++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQGVFDEWTADYAATSEMHDDAAYDAIPEGERLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA D  
Sbjct: 301 KVQGKDGKEHPVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVIINMKAGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK+Y +LS  G DV +DD  ++ G +FA ADL+G P+Q+IVG + V++ +VE+K 
Sbjct: 361 CDAACEKLYYQLSNAGKDVLYDDTDDRAGQKFATADLIGVPVQIIVGPRSVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE +++E  +N A
Sbjct: 421 RKTGERETVTIEAAMNKA 438


>gi|218463078|ref|ZP_03503169.1| prolyl-tRNA synthetase [Rhizobium etli Kim 5]
          Length = 440

 Score =  541 bits (1394), Expect = e-152,   Method: Composition-based stats.
 Identities = 288/438 (65%), Positives = 361/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E TDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDERTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I E+WT+ YAATS++H+E  F+++PE+ R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 SVEGLQAIFEKWTSLYAATSEMHDEAAFNAVPESDRLSARGIEVGHIFYFGTKYSETMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|325292651|ref|YP_004278515.1| Prolyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060504|gb|ADY64195.1| Prolyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 477

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 279/438 (63%), Positives = 357/438 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S GIYSWLPLG++ LD VN IIREE
Sbjct: 38  MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGKRVLDKVNRIIREE 97

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PTLQ+A+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 98  QDRSGAIELLMPTLQTAELWQESGRYDDYGKEMLRIKDRQDRQMLYGPTNEEMITDIFRS 157

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMFV+
Sbjct: 158 YVKSYKNLPLNLYHIQLKFRDEVRPRFGTMRSREFLMKDAYSFDLTKEDAIHSYNKMFVA 217

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IP+++T+FD
Sbjct: 218 YLRTFERLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPADDTNFD 277

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  + ++WTA YAATS++H+E  +D++P+ +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 278 DVAALQGVFDEWTADYAATSEMHDEAAYDAIPDGQRLSARGIEVGHIFYFGTKYSEPMGA 337

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +GADGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA D  
Sbjct: 338 KVQGADGKEHPVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVIINMKAGDAA 397

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK+Y  LS  G DV +DD  ++ G +FA ADL+G P+Q+IVG +  ++ +VE+K 
Sbjct: 398 CDAACEKLYYSLSNAGKDVLYDDTDDRAGQKFATADLIGVPMQIIVGPRSAANGEVEVKD 457

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE +++E  +N  
Sbjct: 458 RKTGDRETVTIEAAMNRV 475


>gi|153009733|ref|YP_001370948.1| prolyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|166980136|sp|A6X1L5|SYP_OCHA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151561621|gb|ABS15119.1| prolyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 442

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 264/441 (59%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQERDMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QVFC K ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVFCDKAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVNRWTTPYAATDEMHDEADWSKVKPEDQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+ HD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEAFHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EKIY  L+  G D   DD  ++ G++FA  DL+G P QVIVG + V+  +VEIK 
Sbjct: 361 CDAVSEKIYEALTNAGVDPLLDDTDDRPGAKFATMDLIGLPTQVIVGPRGVAAGEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ +S+E  IN  +  
Sbjct: 421 RKTGERQSLSVEAAINLLTAE 441


>gi|239831704|ref|ZP_04680033.1| prolyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239823971|gb|EEQ95539.1| prolyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 446

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 262/441 (59%), Positives = 339/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIY+WLP+G K L+ V  IIREE
Sbjct: 5   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYAWLPIGLKVLNKVCDIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 65  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQERDMLFGPTNEEMVTDIFRS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 125 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QVFC K ++D  +P  +TDF 
Sbjct: 185 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVFCDKAYLDLAVPGADTDFR 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV++WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 245 NDAQLTDIVQRWTTPYAATDEMHDEADWAKVKPEDQVSARGIEVGHIFHFGTKYSEPMGA 304

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+ HD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 305 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEAFHDDAGIIWPKAIAPFGAGIVNMKPGDEG 364

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  ++ G++FA  DL+G P QVIVG + V+  +VEIK 
Sbjct: 365 CDAVSEKLYEALTNAGVDPLLDDTDDRPGAKFATMDLIGLPTQVIVGPRGVAAGEVEIKD 424

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+++S+E  IN  +  
Sbjct: 425 RKTGERQNLSVEAAINLLTAE 445


>gi|158423310|ref|YP_001524602.1| prolyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|172047938|sp|A8I438|SYP_AZOC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158330199|dbj|BAF87684.1| prolyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 440

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 335/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++A+I SH+LMLR GMI Q S GIY+WLPLG + L+ +  IIREE
Sbjct: 1   MRLSRYFLPILREVPKEADIVSHRLMLRAGMIRQESAGIYAWLPLGLRVLNKICNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNRTGA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R 
Sbjct: 61  QNRTGAVELLMPTIQSADLWRESGRYDDYGKEMLRIKDRHERDMLFGPTNEEMITEIVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE+RPRFGV RSREFLMKDAYSFDL  EG+KHSYNKMFV+
Sbjct: 121 SIKSYKSLPLNLYHIQWKFRDEVRPRFGVYRSREFLMKDAYSFDLDAEGAKHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGG+LSHEFI+LA TGE++VFC  D+++   P  + +FD
Sbjct: 181 YLRTFARMGLKAIPMVADTGPIGGNLSHEFIILASTGESEVFCHGDYLEMAPPPADVNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  ++  +V  WT  YAAT + H+   F ++P  ++++ARGIEVGHIFYFGTKYS P +A
Sbjct: 241 DAAAIQQVVNDWTTLYAATEEKHDAATFAAIPAERQMAARGIEVGHIFYFGTKYSAPFNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +H + MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF++ ++N+K  D  
Sbjct: 301 KVLGPDGAEHLIHMGSYGIGPSRLVAAMIEASHDDAGIIWPDAVAPFQVGILNLKVGDSA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YA+L+  G DV +DD  E+ GS+FA ADL+G P Q++VG K ++D KVE+K 
Sbjct: 361 VDAACADLYAKLTAAGVDVLYDDTDERAGSKFATADLIGLPWQILVGPKSLADGKVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R+ G RE ++  E      
Sbjct: 421 RVDGSRELVTPAEAFERLK 439


>gi|254713929|ref|ZP_05175740.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254717013|ref|ZP_05178824.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261218820|ref|ZP_05933101.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261321681|ref|ZP_05960878.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|260923909|gb|EEX90477.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294371|gb|EEX97867.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
          Length = 442

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 262/441 (59%), Positives = 339/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V AIIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|315122709|ref|YP_004063198.1| prolyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496111|gb|ADR52710.1| prolyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 453

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 356/446 (79%), Positives = 399/446 (89%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+RSKYFLP +QENP+DAEI SHK+MLRTGMI QHSKG+YSWLPLG KAL  VNAIIREE
Sbjct: 1   MKRSKYFLPAMQENPKDAEIISHKMMLRTGMISQHSKGMYSWLPLGNKALSKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+EMS PTLQSADLW+ESGRY+SYGKEMLR+ DRNDK+M+YGPT+EE+MTDIFRS
Sbjct: 61  QDRIGALEMSNPTLQSADLWIESGRYESYGKEMLRIVDRNDKSMLYGPTNEEMMTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+KSYR+LP   YQ+QLKFRDELRPRFG MRSREFLMKDAYSFDLT E S HSYNKMFVS
Sbjct: 121 HVKSYRDLPLILYQMQLKFRDELRPRFGTMRSREFLMKDAYSFDLTFEDSVHSYNKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIFHRLGLKSIPMRAESGPIGG LSHEFIVL++TGETQ+FCSKDFM+FPIPSENTDFD
Sbjct: 181 YLRIFHRLGLKSIPMRAESGPIGGSLSHEFIVLSNTGETQLFCSKDFMNFPIPSENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DI+SL  IV QWT PYAATSDVHNEKLF SL E  R+ ARGIEVGHIF+FGTKYS PMSA
Sbjct: 241 DIVSLKDIVRQWTTPYAATSDVHNEKLFHSLSEEDRIVARGIEVGHIFHFGTKYSHPMSA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF+GADGK HYVQMGSYGIG MRVVAA+IESSHD +GIIWPDSV+PF ISLIN+K HDQ 
Sbjct: 301 TFQGADGKKHYVQMGSYGIGPMRVVAAIIESSHDAQGIIWPDSVSPFHISLINLKIHDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A +KIY +LS+ GCDVF DD+ EQ GS+FA+ADLLGFPLQ+I+GSKF+SDSKVEIK+
Sbjct: 361 CCSASDKIYTQLSQAGCDVFLDDVDEQAGSKFALADLLGFPLQIIIGSKFISDSKVEIKN 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG +E MSLEEV+NYAS+RF   +
Sbjct: 421 RSTGTKEYMSLEEVVNYASNRFFGEK 446


>gi|254718929|ref|ZP_05180740.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265983916|ref|ZP_06096651.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838840|ref|ZP_07471671.1| prolyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662508|gb|EEZ32769.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406124|gb|EFM62372.1| prolyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 442

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|163843095|ref|YP_001627499.1| prolyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254706964|ref|ZP_05168792.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254709928|ref|ZP_05171739.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|256031421|ref|ZP_05445035.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256159542|ref|ZP_05457310.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256254829|ref|ZP_05460365.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|260168555|ref|ZP_05755366.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261222010|ref|ZP_05936291.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261314427|ref|ZP_05953624.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261317474|ref|ZP_05956671.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261758028|ref|ZP_06001737.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988510|ref|ZP_06101067.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|265997974|ref|ZP_06110531.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|189083490|sp|B0CLE9|SYP_BRUSI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163673818|gb|ABY37929.1| prolyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|260920594|gb|EEX87247.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261296697|gb|EEY00194.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261303453|gb|EEY06950.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261738012|gb|EEY26008.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|262552442|gb|EEZ08432.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|264660707|gb|EEZ30968.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 442

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|225627317|ref|ZP_03785354.1| prolyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617322|gb|EEH14367.1| prolyl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 445

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 424 RKTGERQSLGIEAAINMLTAQ 444


>gi|148560203|ref|YP_001258799.1| prolyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|166980104|sp|A5VQ02|SYP_BRUO2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148371460|gb|ABQ61439.1| prolyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 442

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVFMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLDIEAAINMLTAQ 441


>gi|170742529|ref|YP_001771184.1| prolyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|226701312|sp|B0ULM2|SYP_METS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168196803|gb|ACA18750.1| prolyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 444

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 257/439 (58%), Positives = 343/439 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNRVVEVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PT+QSA+LW ESGRY++YGKEMLR+ DR+++ M++GPT+EE++T IFRS
Sbjct: 61  QDRSGAIELLMPTIQSAELWRESGRYEAYGKEMLRIRDRHEREMLFGPTNEEMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP + Y IQ KFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMFV+
Sbjct: 121 AVRSYKDLPKSLYHIQWKFRDEVRPRFGTMRSREFLMKDAYSFDLDEAGARHAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRAE+GPIGG+LSHEFI+LA TGE++V+C + ++DFPIP  +TDFD
Sbjct: 181 YLRTFARLGLKAIPMRAETGPIGGNLSHEFIILAQTGESEVYCDRAYLDFPIPPGSTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L + V+ WT+ YAATS++H  + F ++PE  R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQATVDHWTSRYAATSEMHEPERFAAVPEEARMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA+IE+SHD  GI+WPD+VAPF + L+N+K  D  
Sbjct: 301 RVTGPDGQERPVHMGSYGIGPSRLVAAIIEASHDEAGIVWPDAVAPFDVGLLNLKTGDIA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC +I  +L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ +VE+K 
Sbjct: 361 TDAACARIQEQLEAAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGQVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE ++ + +     
Sbjct: 421 RATGERETVAPDALAARLR 439


>gi|254689076|ref|ZP_05152330.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693559|ref|ZP_05155387.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|256257325|ref|ZP_05462861.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260754574|ref|ZP_05866922.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|260883601|ref|ZP_05895215.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|261213824|ref|ZP_05928105.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|297248174|ref|ZP_06931892.1| prolyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|260674682|gb|EEX61503.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|260873129|gb|EEX80198.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260915431|gb|EEX82292.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|297175343|gb|EFH34690.1| prolyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 442

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|306843758|ref|ZP_07476357.1| prolyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275949|gb|EFM57662.1| prolyl-tRNA synthetase [Brucella sp. BO1]
          Length = 442

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 259/441 (58%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + +++  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLNLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|154248383|ref|YP_001419341.1| prolyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|226701431|sp|A7INT8|SYP_XANP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154162468|gb|ABS69684.1| prolyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 440

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 262/440 (59%), Positives = 342/440 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLP G + L+ V  IIREE
Sbjct: 1   MRLSRYFLPILREVPKEAEIVSHRLMLRAGMIRQESAGIYAWLPFGLRVLNKVCNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIEM +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R+
Sbjct: 61  QNRSGAIEMLMPTIQSADLWRESGRYDDYGKEMLRIKDRHEREMLFGPTNEEMITEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y IQ KFRDE+RPRFGV RSREFLMKDAYSFDL   G++HSYNKMFV+
Sbjct: 121 YVKSYKALPLNLYHIQWKFRDEVRPRFGVYRSREFLMKDAYSFDLDAAGARHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGG+LSHEFI+LA TGE++VFC  D+++   PS + +FD
Sbjct: 181 YLRTFARMGLKAIPMVADTGPIGGNLSHEFIILASTGESEVFCHGDYLEMAPPSADVNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L S+ ++WT  YAATS+ H+E  F ++PE  R++ARGIEVGHIFYFGTKYS P  A
Sbjct: 241 DAAGLQSVFDRWTELYAATSEKHDEAAFAAIPEASRMAARGIEVGHIFYFGTKYSEPFGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              GADG +H + MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF++ ++N+KA D  
Sbjct: 301 KVLGADGAEHTIHMGSYGIGPSRLVAAMIEASHDDNGIIWPDAVAPFQVGILNLKAGDST 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEK+YA L+  G DV +DD  E+ G++FA ADL+G P Q++VG K ++D KVE+K 
Sbjct: 361 TGAACEKLYAELTAAGYDVLYDDTEERAGAKFATADLIGLPWQILVGPKGLADGKVELKR 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R+ G RE ++  +++     
Sbjct: 421 RVDGSRELIAPGDILERLKA 440


>gi|220924023|ref|YP_002499325.1| prolyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|254782908|sp|B8IUW4|SYP_METNO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219948630|gb|ACL59022.1| prolyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 443

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 257/434 (59%), Positives = 339/434 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNRVTEVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PT+QSA+LW ESGRY++YGKEMLR+ DR+++ M++GPT+EE++T IFRS
Sbjct: 61  QDRSGAIELLMPTIQSAELWRESGRYEAYGKEMLRIRDRHEREMLFGPTNEEMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   Y IQ KFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMFV+
Sbjct: 121 AVRSYKDLPKNLYHIQWKFRDEVRPRFGTMRSREFLMKDAYSFDLDEAGARHAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRAE+GPIGG+LSHEFI+LA TGE++VFC + ++ FPIP  + DFD
Sbjct: 181 YLRTFARLGLKAIPMRAETGPIGGNLSHEFIILAQTGESEVFCDRAYLGFPIPPASIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L + V+ WT+ YAATS++H    F+++PE  R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQATVDHWTSRYAATSEMHEPAAFEAVPEEARMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA+IE+SHD  GI+WPDSVAPF ++L+N+K  D  
Sbjct: 301 RVTGPDGQERPVHMGSYGIGPSRLVAAIIEASHDEAGIVWPDSVAPFDVALLNLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC K+   L   G  V  DD  E+ G++FA ADL+G P QVIVG K +++  +E+K 
Sbjct: 361 TDAACAKLQEELEAAGLTVLTDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGTIELKR 420

Query: 421 RLTGIREDMSLEEV 434
           R TG RE ++++ V
Sbjct: 421 RATGEREIVAVDAV 434


>gi|256369253|ref|YP_003106761.1| prolyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|255999413|gb|ACU47812.1| prolyl-tRNA synthetase [Brucella microti CCM 4915]
          Length = 442

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEML + DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLCIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|256060932|ref|ZP_05451090.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261324932|ref|ZP_05964129.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261300912|gb|EEY04409.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
          Length = 442

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAGTGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKLGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|118590019|ref|ZP_01547423.1| prolyl-tRNA synthetase [Stappia aggregata IAM 12614]
 gi|118437516|gb|EAV44153.1| prolyl-tRNA synthetase [Stappia aggregata IAM 12614]
          Length = 442

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/444 (56%), Positives = 335/444 (75%), Gaps = 2/444 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGLKVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAI++ +PT+QSADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFR 
Sbjct: 61  QARAGAIQLLMPTIQSADLWRESGRYDAYGKEMLRITDRHERDMLFGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKESARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM+A++GPIGGD+SHEFI+LA+TGE++VFC K  ++ P P+E+TDF 
Sbjct: 181 YLRTFARMGLKAIPMKADTGPIGGDMSHEFIILAETGESEVFCDKSLLELPTPAEDTDF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  IV +WT PYAAT ++H+E  F +LPE+ RVSARGIEVGHIFYFGTKYS  M A
Sbjct: 240 -FSDLTPIVTEWTTPYAATDEMHDEAAFGALPEDTRVSARGIEVGHIFYFGTKYSDAMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GI+WP SVAPF + L+N+K  D++
Sbjct: 299 KVATAEGTEVPVHMGSYGVGVSRLLGALIEANHDENGIVWPKSVAPFHVGLVNLKPGDEL 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE +YA+    G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K 
Sbjct: 359 TDPVCEDLYAKFEAAGIEVLYDDTDTRAGAKFATMDLIGLPFQVVAGPRGLKDGLLEVKD 418

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG +E +S E  +N  +   ++
Sbjct: 419 RATGEKEMLSPEATLNKLTAALTD 442


>gi|62289771|ref|YP_221564.1| prolyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699699|ref|YP_414273.1| prolyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024014|ref|YP_001934782.1| prolyl-tRNA synthetase [Brucella abortus S19]
 gi|254697210|ref|ZP_05159038.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260545481|ref|ZP_05821222.1| prolyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260761620|ref|ZP_05873963.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|81309431|sp|Q57DT1|SYP_BRUAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152174|sp|Q2YNE3|SYP_BRUA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699122|sp|B2S561|SYP_BRUA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|62195903|gb|AAX74203.1| ProS, prolyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82615800|emb|CAJ10798.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase,
           class IIa:Anticodon binding domain:Prolyl-tRNA
           synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189019586|gb|ACD72308.1| prolyl-tRNA synthetase [Brucella abortus S19]
 gi|260096888|gb|EEW80763.1| prolyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260672052|gb|EEX58873.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 442

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + ++  IN  + +
Sbjct: 421 RKTGERQSLGIKAAINMLTAQ 441


>gi|237815257|ref|ZP_04594255.1| prolyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790094|gb|EEP64304.1| prolyl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 445

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + ++  IN  + +
Sbjct: 424 RKTGERQSLGIKAAINMLTAQ 444


>gi|254701588|ref|ZP_05163416.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261752141|ref|ZP_05995850.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261741894|gb|EEY29820.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 442

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKFYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|254502934|ref|ZP_05115085.1| prolyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439005|gb|EEE45684.1| prolyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 442

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/444 (55%), Positives = 335/444 (75%), Gaps = 2/444 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGLKVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFRS
Sbjct: 61  QARAGAVQLLMPTIQPADLWRESGRYDAYGKEMLRITDRHEREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFDL  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDLDQETARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM+A++GPIGGDLSHEFI+LA+TGE++VF  K  ++ PIP+++TDF 
Sbjct: 181 YLRTFDRMGLKAIPMKADTGPIGGDLSHEFIILAETGESEVFLDKSLLEMPIPAKDTDFW 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +S   IVE WT PYAAT ++H+E  F +L E+ RVSARGIEVGHIFYFGTKYS  M A
Sbjct: 241 SDLS--PIVESWTTPYAATDEMHDEAAFGALEEDTRVSARGIEVGHIFYFGTKYSDAMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GIIWP SVAPF + +IN++  D +
Sbjct: 299 KVATAEGTEVPVHMGSYGVGVSRLLGALIEANHDEDGIIWPKSVAPFHVGIINMRPGDDL 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE +YA+L   G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K 
Sbjct: 359 TDPVCEDLYAKLEAAGIEVLYDDTDSRAGAKFATMDLIGLPFQVVAGPRGLKDGVLEVKD 418

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG +E ++ E  +N  +   ++
Sbjct: 419 RATGEKEMLTPEATLNKLTAALTD 442


>gi|225852336|ref|YP_002732569.1| prolyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256044499|ref|ZP_05447403.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113355|ref|ZP_05454213.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|256264165|ref|ZP_05466697.1| prolyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563853|ref|ZP_05834339.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265990923|ref|ZP_06103480.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994761|ref|ZP_06107318.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|114152175|sp|Q8YGL8|SYP_BRUME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782889|sp|C0RIF7|SYP_BRUMB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225640701|gb|ACO00615.1| prolyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|260153869|gb|EEW88961.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|262765874|gb|EEZ11663.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|263001707|gb|EEZ14282.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094383|gb|EEZ18228.1| prolyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408844|gb|ADZ65909.1| prolyl-tRNA synthetase [Brucella melitensis M28]
 gi|326538559|gb|ADZ86774.1| prolyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 442

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 336/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L   V +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDTVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATIDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|17987423|ref|NP_540057.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|17983114|gb|AAL52321.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
          Length = 445

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 336/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L   V +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDTVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATIDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 424 RKTGERQSLGIEAAINMLTAQ 444


>gi|161618786|ref|YP_001592673.1| prolyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|254704135|ref|ZP_05165963.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|260566616|ref|ZP_05837086.1| prolyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261754801|ref|ZP_05998510.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|189083489|sp|A9MAJ9|SYP_BRUC2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161335597|gb|ABX61902.1| prolyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|260156134|gb|EEW91214.1| prolyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261744554|gb|EEY32480.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
          Length = 442

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G R+ + +E  IN  + +
Sbjct: 421 RKMGERQSLGIEAAINMLTAQ 441


>gi|288958966|ref|YP_003449307.1| prolyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911274|dbj|BAI72763.1| prolyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 437

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/438 (54%), Positives = 317/438 (72%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+P L+E P +A+I SH+LMLR GMI Q S GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSSFFMPTLKETPTEAQIVSHRLMLRAGMIRQTSAGIYAWLPLGYRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QDAAGAQELLMPTIQSADLWRESGRYDDYGKEMLRITDRHDREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+ P G++ SY KMF++
Sbjct: 121 FVKSYRQLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDPAGARRSYQKMFLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA+TGE+ VFC KD+M   +  +    +
Sbjct: 181 YLRTFARIGLKAIPMRADTGPIGGDLSHEFIILAETGESGVFCHKDWMTLDVLKDAPGME 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D +      ++ T  YAAT + H+      +P+   VSARGIEVGHIF FGTKYS PM+A
Sbjct: 241 DDLQ--PFFDRVTGIYAATDEKHDPAN-SPVPDADLVSARGIEVGHIFNFGTKYSKPMNA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G +G+   V+MGSYGIG  R++ A+IE+SHD  GIIWPD+VAPF + LIN+K+ D  
Sbjct: 298 VVAGPNGESIPVEMGSYGIGVSRLMGAIIEASHDDNGIIWPDAVAPFNVGLINLKSGDAE 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++YA+L   G +V +DD  E+ G++FA  DL+G P Q++VG + +    VE+K 
Sbjct: 358 TDRVCAELYAKLEAAGLEVAYDDRDERPGAKFADMDLIGVPWQLVVGPRGLKSGVVELKR 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG +E++ +E  +   
Sbjct: 418 RATGEKEELPVEAALAKL 435


>gi|295689605|ref|YP_003593298.1| prolyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295431508|gb|ADG10680.1| prolyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 443

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 253/436 (58%), Positives = 328/436 (75%), Gaps = 1/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRLSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLNKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + +++GPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRELLFGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE RPRFGVMR REF MKDAYSFDL  +G++ SYN+MFV+
Sbjct: 121 SIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFFMKDAYSFDLDADGARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++ P P  + D+ 
Sbjct: 181 YLNLFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMPAPGPDLDWI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV Q TA YAAT ++H+E  F++LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 241 N-GDLQPIVNQRTALYAATEEMHDEAAFNALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+   VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + ++N++  D  
Sbjct: 300 TVQGPDGQQVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGIVNMRQGDAA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L   G DV +DD   + G++FA  DL+G P Q+IVG K +++  VEIK+
Sbjct: 360 CDAACETAYNALKAAGRDVLYDDTDARGGAKFATMDLIGLPWQLIVGPKGIAEGVVEIKN 419

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R   SL+ V++
Sbjct: 420 RKTGERHTASLDSVLD 435


>gi|163759522|ref|ZP_02166607.1| prolyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283119|gb|EDQ33405.1| prolyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 447

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 275/445 (61%), Positives = 343/445 (77%), Gaps = 5/445 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+ENP+DAEI SH+LM R GMI Q S GIYSWLPLG++ LD V  I+REE
Sbjct: 1   MRLSKYFLPILKENPKDAEIVSHRLMARAGMIKQQSAGIYSWLPLGKRVLDKVCNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PT+Q ADLW ESGRYD YG+EMLR+ DRND+ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGAIEILMPTIQPADLWRESGRYDDYGQEMLRINDRNDREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  E SK +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDYEASKAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GLKSIPMRA++GPIGG LSHEFIVLA+TGE+QVFC +DF  F +P  + ++D
Sbjct: 181 YLRTFERCGLKSIPMRADTGPIGGSLSHEFIVLAETGESQVFCHRDFDGFAVPPVDMNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL-----FDSLPENKRVSARGIEVGHIFYFGTKYS 295
           D  ++ ++VEQWT P+AAT ++ +++      +D L E+ RVSARGIEVGHIF+FGTKYS
Sbjct: 241 DAAAVAAVVEQWTTPFAATDEIMDKEEWAREAWDGLGEDARVSARGIEVGHIFHFGTKYS 300

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            PM+A  +G DGK HYV MGSYGIG  R++ A+IE+SHD  GIIWP  VAPF + LIN+K
Sbjct: 301 EPMNAFVQGPDGKQHYVSMGSYGIGPSRLLGAIIEASHDENGIIWPKGVAPFDVGLINMK 360

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D  C  ACE+I   L   G ++ +DD  E+ G++FA ADL+G P+QVI G + V+D  
Sbjct: 361 PGDAACDAACERIETALENAGIELLYDDTDERAGAKFAKADLIGLPIQVIAGPRAVADGN 420

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           VEIK R TG RE +S++E IN  + 
Sbjct: 421 VEIKVRATGERETLSIDEAINRLAQ 445


>gi|154253644|ref|YP_001414468.1| prolyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|171769681|sp|A7HY28|SYP_PARL1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154157594|gb|ABS64811.1| prolyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 439

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 245/440 (55%), Positives = 329/440 (74%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+ENP +A+IASH+LMLR GM+ Q + GIY+WLPLG   L  +  I+R+E
Sbjct: 1   MRLSRYFLPTLKENPAEAQIASHRLMLRAGMVRQTAAGIYAWLPLGLAVLRKIEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PTLQSADLW +SGRYD+YG EMLR+ DR+++ M+YGPT+EE++TDIFR 
Sbjct: 61  QKRAGAIELLMPTLQSADLWRQSGRYDAYGPEMLRIVDRHERDMLYGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   + IQ KFRDE+RPRFGVMR REFLMKD YSFDL  EG++ +Y KMFVS
Sbjct: 121 AVRSYRDLPRNLFHIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDVEGARRAYRKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGGD+SHEFI+LA+TGE+ VFC +D +D  +P ++ D++
Sbjct: 181 YLRSFARMGLKAIPMAADTGPIGGDMSHEFIILAETGESAVFCHRDLVDMAVPGDDIDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
               LN ++   T  YAAT + H+   FD+  P++K++SARGIEVGHIF+FGTKYS  M 
Sbjct: 241 --TDLNPVIAARTDLYAATDEKHDAAKFDAEVPKDKQLSARGIEVGHIFFFGTKYSQSMG 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DGK+  VQMGSYGIG  R+V A+IE+SHD  GI+WPD+VAPF + LIN+K+ D 
Sbjct: 299 ALVTGPDGKEVPVQMGSYGIGVSRLVGAIIEASHDDAGIVWPDAVAPFTVGLINLKSGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE IY +L+  G DV +DD  E+ G++F+  DL+G P Q+++G + +    VE+K
Sbjct: 359 ETDAACESIYEKLTAQGIDVLYDDTDERAGAKFSNMDLIGLPWQLVIGPRGLKSGTVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R TG +E++S E  +   +
Sbjct: 419 RRATGEKEELSPEAALAKIA 438


>gi|323139097|ref|ZP_08074155.1| prolyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322395661|gb|EFX98204.1| prolyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 447

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/447 (59%), Positives = 339/447 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR G+I Q S GIY+WLPLG K L+N+  IIREE
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGLIRQESAGIYAWLPLGLKVLNNITRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE  +PT+QSADLW ESGRYD+YGKEMLR+ DR+D+ M++GPT+EE++T+IFR+
Sbjct: 61  QNRAGAIECLMPTIQSADLWRESGRYDAYGKEMLRITDRHDREMLFGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDLT E  +HSYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLTAEAGRHSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM AESGPIGG+LSHEFI+LA+TGE++VFC KDF+ F  P  N DFD
Sbjct: 181 YLRTFARMGLTAIPMAAESGPIGGNLSHEFIILAETGESEVFCHKDFLSFAPPPANVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L  IV +WT+ YAATS++H+   ++++PE  RVSARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DAPALEEIVGKWTSRYAATSEMHDAAAYEAVPEASRVSARGIEVGHIFYFGTKYSEPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+  VQMGSYGIG  R+VAA+IE+ HD  GI+WP+ VAPF + + ++K  D  
Sbjct: 301 VVNGPDGKEVVVQMGSYGIGPSRLVAAIIEAGHDEAGIVWPEQVAPFHVGVADLKVGDAN 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C  +  +L   G DV  DD  E+ G++FA  DL+G P Q++VG K +++ +VE+K 
Sbjct: 361 TGRVCGDLVQQLENAGLDVLHDDRDERPGAKFATLDLIGLPWQILVGPKGLAEGRVEVKR 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRP 447
           R TG RE +S E+V+          R 
Sbjct: 421 RRTGERELLSPEDVVARIVEAVKQARA 447


>gi|319408595|emb|CBI82250.1| Prolyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 441

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 261/439 (59%), Positives = 333/439 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+PIL+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSKYFIPILKENPKEAEIVSHRLMLRAGMIRQQTAGIYSWLPLGKKVLDKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + GA+E+ +PT+QS DLW ESGRYD YG EMLR+ DR ++ ++YGPT+EE++TDIFRS
Sbjct: 61  QKQAGALEILMPTIQSVDLWHESGRYDDYGFEMLRIKDRQERDLLYGPTNEEIVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  E +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYQIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYESAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IP RA++GPIGG+ SHEF +LA+TGE+ +FC K F+D   P  + DF 
Sbjct: 181 YLRTFSRMGLKVIPTRADTGPIGGERSHEFTILAETGESAIFCDKQFLDINAPLFSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV+QWT  YAAT ++HNE+ +  +P++ ++SARGIEVGHIFYFGTKYS+PM A
Sbjct: 241 DKTVLTDIVKQWTTFYAATEEMHNEEEWSKIPKSNQLSARGIEVGHIFYFGTKYSVPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP  +APF   +IN+K  D+ 
Sbjct: 301 KVMGKDGKEHPVFMGSYGIGPSRLVAAAIEASHDENGIIWPKPIAPFDFGIINMKPDDKK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ G +FA+ DL+G P Q+IVG K  + ++VEIK 
Sbjct: 361 CNHMCETLYQGLIRAGFDPLLDDRNERPGVKFAIMDLIGLPTQIIVGPKSAAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG +E +++E V+N  S
Sbjct: 421 RKTGAKESLTIESVLNRLS 439


>gi|23501709|ref|NP_697836.1| prolyl-tRNA synthetase [Brucella suis 1330]
 gi|81847158|sp|Q8G197|SYP_BRUSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23347633|gb|AAN29751.1| prolyl-tRNA synthetase [Brucella suis 1330]
          Length = 442

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 259/441 (58%), Positives = 336/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRY +YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYGAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G R+ + +E  IN  + +
Sbjct: 421 RKMGERQSLGIEAAINMLTAQ 441


>gi|298291828|ref|YP_003693767.1| prolyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928339|gb|ADH89148.1| prolyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 440

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 336/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLPLG++ LD +  ++REE
Sbjct: 1   MRLSRYFLPILREVPKEAEIVSHRLMLRAGMIRQESAGIYAWLPLGKRVLDKICNVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R+
Sbjct: 61  QNRSGAIEILMPTIQSADLWRESGRYDDYGKEMLRIKDRHERDMLFGPTNEEMLTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYS DL  E +  +YN+MFV+
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSVDLDFESAVVAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPM A++GPIGG+ SHEFI+LA TGE+QVFC  D++    P  + DF 
Sbjct: 181 YLRTFERLGLKAIPMVADTGPIGGNHSHEFIILASTGESQVFCHSDYLGMDTPGSDVDFQ 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L +IV +WT+ YAAT + H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM+A
Sbjct: 241 DPAALQTIVNRWTSLYAATEEKHDEAAFEAIPEGQRLSARGIEVGHIFYFGTKYSEPMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG +  V MGSYGIG  R+ AA+IE+SHD  GIIWP+++APF++ L+N+K  D  
Sbjct: 301 TVAGPDGVERPVHMGSYGIGPSRLAAAIIEASHDENGIIWPEAIAPFRVGLLNLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IYA L+    DV +DD  E+ GS+FA ADL+G P Q+IVG K +++  VE+K 
Sbjct: 361 TDAACEAIYAELASRNIDVLYDDTDERPGSKFATADLIGLPWQIIVGPKGLANGMVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G RE + +   +   +
Sbjct: 421 RADGTRETLPVAAALARIT 439


>gi|254560035|ref|YP_003067130.1| proline-tRNA ligase [Methylobacterium extorquens DM4]
 gi|254267313|emb|CAX23145.1| proline-tRNA ligase [Methylobacterium extorquens DM4]
          Length = 442

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 334/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 2   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 62  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 122 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 182 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 242 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 301

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 302 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 361

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 362 CDAACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 421

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G RE +   ++     
Sbjct: 422 RASGERETLDPVDLPARIR 440


>gi|218529196|ref|YP_002420012.1| prolyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|254782907|sp|B7KPK1|SYP_METC4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218521499|gb|ACK82084.1| prolyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 441

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 334/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 1   MRLSRYFLPILRETPKEAEIISHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 121 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G RE +   ++     
Sbjct: 421 RASGERETLDPVDLPARIR 439


>gi|163850499|ref|YP_001638542.1| prolyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|226701309|sp|A9W1L5|SYP_METEP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163662104|gb|ABY29471.1| prolyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 441

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 334/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 121 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G RE +   ++     
Sbjct: 421 RASGERETLDPVDLPARIR 439


>gi|110633394|ref|YP_673602.1| prolyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123162548|sp|Q11JI8|SYP_MESSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110284378|gb|ABG62437.1| prolyl-tRNA synthetase [Chelativorans sp. BNC1]
          Length = 442

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 261/434 (60%), Positives = 347/434 (79%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E PR+AEI SH+LMLR+GMI Q   G +SWLPLG++ LD V  I+REE
Sbjct: 1   MRVSRYFLPILKETPREAEIVSHRLMLRSGMIRQQGAGSFSWLPLGKRVLDKVCQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PT+QSADLW+ESGRY+ YGKEMLR+ DR D+AM+YGPT+EE++TDIFR+
Sbjct: 61  QDRAGAQEILMPTIQSADLWIESGRYNDYGKEMLRIRDRQDRAMLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +YN+MFV+
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKAAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA TGE++VFC+KDF+D P+P  + DF 
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDLSHEFIILASTGESEVFCNKDFLDLPVPPADVDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  +V +WT PYAAT ++H+E  +  +P  K+++ARGIEVGHIF+FGTKYS PM+A
Sbjct: 241 NDAEIGGVVSEWTTPYAATDEMHDEAAWAEVPAEKQLAARGIEVGHIFHFGTKYSKPMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++H+V MGSYGIG  R+ AA+IE+SHD  GIIWP+SVAPF ++LIN+K  D  
Sbjct: 301 KVTGPDGQEHFVSMGSYGIGPTRLTAAIIEASHDDGGIIWPESVAPFDVALINMKVGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA ++  G +V +DD  ++ G++FA ADL+G P QVIVG + ++  +VE+K+
Sbjct: 361 CDRVCEELYAGMTAAGREVLYDDTDQRAGAKFATADLIGLPWQVIVGPRGIAAGEVEVKN 420

Query: 421 RLTGIREDMSLEEV 434
           R TG RE++ +  V
Sbjct: 421 RATGERENLPISAV 434


>gi|260462251|ref|ZP_05810495.1| prolyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259032111|gb|EEW33378.1| prolyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 442

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 269/434 (61%), Positives = 340/434 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR D+ M+YGPT+EEV+T+I R+
Sbjct: 61  QNRAGALEILMPTIQSADLWRESGRYDDYGKEMLRIKDRQDRDMLYGPTNEEVVTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGAKAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QV+C +D++   +P ENTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVYCDRDYLSLQVPGENTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H++  +D L E  RVSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDGEIADIVKTWTTPYAATDEMHDQAAWDKLGEADRVSARGIEVGHIFHFGDKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+V  GSYGIG  R+VAA+IE+SHD  GIIWP++VAPF I +IN+K  D  
Sbjct: 301 KVTGPDGKDHFVSGGSYGIGPSRLVAAIIEASHDENGIIWPEAVAPFDIGVINMKVGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   C+++YA  +  G DV +DD  ++ G +FA ADL+G P QVIVG + V+  +VEIK+
Sbjct: 361 CDRVCDELYAAFADAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEVEIKN 420

Query: 421 RLTGIREDMSLEEV 434
           R TG RE + + E 
Sbjct: 421 RKTGERETLPIAEA 434


>gi|167646774|ref|YP_001684437.1| prolyl-tRNA synthetase [Caulobacter sp. K31]
 gi|189083491|sp|B0SZ28|SYP_CAUSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167349204|gb|ABZ71939.1| prolyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 445

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/441 (57%), Positives = 324/441 (73%), Gaps = 2/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  V  I+REE
Sbjct: 1   MRLSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLKKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + ++YGPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRDLLYGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  EG++ +YN+MFV+
Sbjct: 121 SVKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDAEGARKAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++   P  + D  
Sbjct: 181 YLNLFSRMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMAAPGPDID-- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +V + TA YAAT ++H+E  F +LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 239 WYGDLQPLVNERTALYAATEEMHDEAAFAALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + +IN++  D  
Sbjct: 299 LVTGPDGKDVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGVINMRQGDAA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +ACE  Y  L   G DV +DD   + G++FA  DL+G P Q+IVG K +++  VE+K+
Sbjct: 359 CDEACETAYKALQAAGRDVLYDDNDTRGGAKFATMDLIGVPWQLIVGPKGIAEGVVELKN 418

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R    L EVI   S +
Sbjct: 419 RKTGERHSAPLAEVIAQLSAQ 439


>gi|240137564|ref|YP_002962035.1| proline-tRNA ligase [Methylobacterium extorquens AM1]
 gi|240007532|gb|ACS38758.1| proline-tRNA ligase [Methylobacterium extorquens AM1]
          Length = 442

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 334/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 2   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 62  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 122 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 182 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 242 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 301

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 302 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 361

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 362 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 421

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G RE +   ++     
Sbjct: 422 RASGERETLDPVDLPARIR 440


>gi|114569925|ref|YP_756605.1| prolyl-tRNA synthetase [Maricaulis maris MCS10]
 gi|122316107|sp|Q0APX0|SYP_MARMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114340387|gb|ABI65667.1| prolyl-tRNA synthetase [Maricaulis maris MCS10]
          Length = 444

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/440 (55%), Positives = 326/440 (74%), Gaps = 2/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DAEI SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPVLKETPSDAEIVSHQLMLRAGMIKQEAAGIYAWLPLGHRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+QSADLW ESGRYD YG EMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QDRAGAVELLMPTIQSADLWRESGRYDDYGDEMLRITDRHDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSY+++P   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YCKSYKDVPKLLYHIQWKFRDERRPRFGVMRGREFLMKDAYSFDVDEAAARRSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PM+A++GPIGGDLSHEFIVLA+TGE++VFC  D ++   P  + DFD
Sbjct: 181 YLNTFARLGLKAVPMQADTGPIGGDLSHEFIVLAETGESEVFCHADLVEMGAPGLDVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +    +V+Q TA YAAT ++H  + F ++P ++++SARGIEVGHIF FGTKYS PM A
Sbjct: 241 GDLQ--PLVDQRTALYAATEEMHQPEEFAAVPADRQLSARGIEVGHIFNFGTKYSEPMKA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +  DG+   V MGSYG+G  R++ A+IE+ HD KG IWP+SVAPF   +IN++  D+ 
Sbjct: 299 TVQHQDGQPRPVHMGSYGVGVSRLLGAIIEAHHDEKGCIWPESVAPFGAGIINMRVGDEA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L K G D  +DD   + G++FA ADL+G P Q++VG + + + K+E+K 
Sbjct: 359 CDAACETAYQGLVKAGLDPLYDDTDSRAGAKFATADLIGLPYQLVVGPRGLKEGKIELKV 418

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG   +MS E+ ++  + 
Sbjct: 419 RRTGETHEMSPEDAVSRLAE 438


>gi|114707388|ref|ZP_01440285.1| prolyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537269|gb|EAU40396.1| prolyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 440

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 261/440 (59%), Positives = 336/440 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E PR+AEI SH+LMLR GMI Q + G+Y++LPLG K L+ V AIIREE
Sbjct: 1   MRLSRYFLPILKETPREAEIVSHQLMLRAGMIRQQAAGLYTFLPLGLKVLNKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YG+EMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QNRAGANELLMPTIQSADLWRESGRYDAYGEEMLRITDRHKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E ++ +Y++MFVS
Sbjct: 121 YVRSYRSLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDFESAQTAYHRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GL++IPMRA++GPIGG+LSHEFI+LA TGE++VFC +D++   IPSE  DFD
Sbjct: 181 YLRTFDRCGLQAIPMRADTGPIGGNLSHEFIILASTGESEVFCHRDYLGMEIPSEAIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L SIVE+WT PYAAT ++H+E  ++++P N +++ARGIEVGHIFYFGTKYS  M+A
Sbjct: 241 DAGQLASIVEKWTTPYAATDEMHDETAWNTVPANHQLNARGIEVGHIFYFGTKYSAAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYGIG  R+VAA IE+ HD  GIIWP S+APF + LIN+K  D  
Sbjct: 301 AVTGPDGKDVPVHMGSYGIGPSRLVAAAIEAFHDEAGIIWPRSIAPFDVGLINMKPGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEKIY  + + G DV +DD   + G +FA  DL+G P QVI+G +     + E+K 
Sbjct: 361 CDAACEKIYEEMKQAGIDVLYDDQEGRAGGKFATMDLIGLPTQVIIGPRGAKSGEAEVKD 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +G RE + +++VI     
Sbjct: 421 RASGARETIPMDQVIAKVKA 440


>gi|170748459|ref|YP_001754719.1| prolyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|226701311|sp|B1LUL8|SYP_METRJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170654981|gb|ACB24036.1| prolyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 441

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 254/439 (57%), Positives = 334/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P++AEI SH+LMLR G++ Q + GIY+WLPLG + L+ V A+IR E
Sbjct: 1   MRLSRYFMPTLRETPKEAEIVSHRLMLRAGLVRQEAAGIYAWLPLGLRVLERVCAVIRRE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GA+E+ +PT+QSA+LW ESGRYD+YGKEMLRL DR+D+ M+YGPT EE++T+IFR+
Sbjct: 61  QDRSGAVEILMPTVQSAELWRESGRYDAYGKEMLRLKDRHDREMLYGPTAEEMVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQI  KFRDE+RPRFG MRSREFLMKDAYSFD    G++H+YN+MFV+
Sbjct: 121 SVRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDAYSFDFDQAGARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGGDLSHEFI+LA TGE++VFC K ++ F IP    DFD
Sbjct: 181 YLRTFAGLGLKAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDKAYLGFDIPPATVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  IV+ WT+ YAAT ++H    F  +PE+ R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQGIVDAWTSHYAATEEMHEPAAFAEVPEDSRMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF ++LIN+K  D  
Sbjct: 301 KVAGPDGIERPVHMGSYGIGPSRLVAAIIEASHDEAGIIWPDAVAPFDVALINLKVGDSA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC +I + L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ KVE+K 
Sbjct: 361 TEAACAQIQSDLEAAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G RE ++  +++    
Sbjct: 421 RAGGERESLATVDLLARIR 439


>gi|16126174|ref|NP_420738.1| prolyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221234945|ref|YP_002517381.1| prolyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|81856261|sp|Q9A6Z5|SYP_CAUCR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782893|sp|B8GWT1|SYP_CAUCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13423386|gb|AAK23906.1| prolyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220964117|gb|ACL95473.1| prolyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 443

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 254/436 (58%), Positives = 329/436 (75%), Gaps = 1/436 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRSSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLNKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + +++GPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRELLFGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  +G++ SYN+MFV+
Sbjct: 121 SIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDADGARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++ P P  + D+ 
Sbjct: 181 YLNLFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMPAPGPDLDWI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  +V Q TA YAAT ++H+E  F++LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 241 N-GDLQPLVNQRTALYAATEEMHDEAAFNALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+   VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + ++N++  D  
Sbjct: 300 TVQGPDGQQVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGIVNMRQGDAA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L   G +V +DD   + G++FA  DL+G P Q+IVG K +++  VEIKH
Sbjct: 360 CDAACETAYNALKAAGREVLYDDTDARGGAKFATMDLIGLPWQLIVGPKGIAEGVVEIKH 419

Query: 421 RLTGIREDMSLEEVIN 436
           R TG R   SLE V++
Sbjct: 420 RKTGERHTASLESVLD 435


>gi|254418115|ref|ZP_05031839.1| prolyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196184292|gb|EDX79268.1| prolyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 438

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 247/441 (56%), Positives = 327/441 (74%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPTLKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR+
Sbjct: 61  QQRAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 YVKSYKSLPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDVDEASARKAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC K  ++ P P  + D+D
Sbjct: 181 YLNTFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCDKALVEMPAPGADVDWD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
           D+ S   IV+Q TA YAAT ++H+E  F++      R+SARGIEVGHIFYFG KYS PM 
Sbjct: 241 DLQS---IVDQRTALYAATEEMHDEARFEAETAEGDRLSARGIEVGHIFYFGEKYSAPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG+D  V MGSYG+G  R++ A+IE+SHD  GIIWPD+VAPF + +IN++A+D 
Sbjct: 298 AKVAGPDGQDAEVHMGSYGVGVSRLLGAIIEASHDEGGIIWPDAVAPFDVVVINLRANDA 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE   A+L K+G DV +DD  E+ G +FA ADL+G P Q+ +G K ++D  VE+K
Sbjct: 358 AVSAACEDAVAQLEKLGKDVLYDDTDERPGGKFATADLIGVPWQLTIGPKGLADGVVELK 417

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R TG +  + L E I   + 
Sbjct: 418 RRATGEKVSVPLAEAIERLTA 438


>gi|240850599|ref|YP_002971999.1| prolyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267722|gb|ACS51310.1| prolyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 441

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 265/439 (60%), Positives = 343/439 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIVSHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKVCRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRA++GPIGG+LSHEFI+LA+TGE+ +FC+K F++  +P  + DF 
Sbjct: 181 YLRTFSRLGLKAIPMRADTGPIGGELSHEFIILAETGESAIFCNKQFLELTVPDSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L+ IV+QWT+ YAAT ++HNE+ +  + ++ R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLDDIVKQWTSFYAATEEMHNEEEWAKVSDHNRLSARGIEVGHIFHFGTKYSAPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP S+APF   +IN+K+ D+ 
Sbjct: 301 KVMGQDGKEHVVSMGSYGIGPSRLVAAAIEASHDENGIIWPKSMAPFDFGIINMKSDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L + G D   DD  E+ GS+FA  DL+G P Q+IVG   ++ ++VEIK 
Sbjct: 361 CTKACEFLYQGLKEAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPNSIAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+++ + +E+V++  S
Sbjct: 421 RKTGVKKSLKVEDVLSQLS 439


>gi|328543706|ref|YP_004303815.1| Prolyl-tRNA synthetase [polymorphum gilvum SL003B-26A1]
 gi|326413449|gb|ADZ70512.1| Prolyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 442

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 255/442 (57%), Positives = 333/442 (75%), Gaps = 2/442 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGFRVLRKIEKIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M+YGPT+EE++T+IFRS
Sbjct: 61  QARAGAVQLLMPTIQPADLWRESGRYDAYGKEMLRITDRHEREMLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFD+  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDIDKEAARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGD+SHEFI+LA TGE+ VFC +  +D P P E+TDF 
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDMSHEFIILASTGESAVFCDRSLLDLPTPGEDTDF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L+ IVE WT PYAAT ++H+E  F +LPE +RVSARGIEVGHIFYFGTKYS PM A
Sbjct: 240 -LSDLSPIVEAWTTPYAATDEMHDETTFAALPEAERVSARGIEVGHIFYFGTKYSEPMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GIIWP SVAPF + LIN+K  D  
Sbjct: 299 RVMTAEGTEVPVHMGSYGVGVSRLLGALIEANHDDDGIIWPASVAPFHVGLINLKPGDAD 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YARL  VG +V +DD+  + G++FA  DL+G P Q+I G + + D  VE+K 
Sbjct: 359 TDSACAGLYARLEAVGVEVLYDDVDTRAGAKFATMDLIGLPFQIIAGPRGLKDGVVEVKE 418

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G RE +SLE   N      
Sbjct: 419 RASGQRESLSLEAAFNRVREAL 440


>gi|90417824|ref|ZP_01225736.1| prolyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337496|gb|EAS51147.1| prolyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 440

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 260/440 (59%), Positives = 335/440 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + G+YS+LPLG++ LD V AIIREE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQAAGLYSFLPLGKRVLDKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PT+QSADLW ESGRY+ YGKEMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTIQSADLWRESGRYEDYGKEMLRIEDRHGRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++++Y++LP   Y +Q KFRDE+RPRFGVMRSREFLMKDAYSFDL  + SK +Y++MFV+
Sbjct: 121 YVRTYKDLPLNLYHLQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYDNSKIAYDRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GLK+IPMRA++GPIGG+LSHEFIVLA TGE++VFC +D++D  +P E  DFD
Sbjct: 181 YLRTFERCGLKAIPMRADTGPIGGELSHEFIVLASTGESEVFCHRDYLDLAVPCEGVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV+ WT PYAAT ++H    +D L E+ +++ARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DAAGLAEIVKAWTTPYAATDEMHETATWDQLAEDDKLAARGIEVGHIFHFGTKYSEPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYGIG  R++AA+IE+SHD  GIIWP SVAPF + LIN+K  D  
Sbjct: 301 VVTGPDGKDVPVHMGSYGIGPSRLLAAIIEASHDENGIIWPKSVAPFDVGLINMKPGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y ++   G DV +DD   + G++FA  DL+G P+QVIVG +     + EIK 
Sbjct: 361 CDAACEDLYRQMQAAGIDVLYDDQDTRAGAKFASMDLIGLPMQVIVGPRGAKAGEAEIKL 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG R+ + L  V+     
Sbjct: 421 RATGERQSLPLSSVLARVQA 440


>gi|49474193|ref|YP_032235.1| prolyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|81827622|sp|Q6FZX5|SYP_BARQU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49239697|emb|CAF26072.1| Prolyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 441

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 267/436 (61%), Positives = 341/436 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIISHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKVCKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAVEILMPTVQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVHSYKDLPLNLYHIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGG+LSHEFI+LA+TGE+ +FC K F +  +P  + DF 
Sbjct: 181 YLRTFSCLGLKAIPMRADTGPIGGELSHEFIILAETGESAIFCDKKFFELTVPHSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L +IV+QWT+ YAAT ++HNE+ +  + +N R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLANIVKQWTSFYAATEEMHNEEEWAKVSDNDRLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAAVIE+SHD  GIIWP S+APF   +IN+K +D+ 
Sbjct: 301 KVMGQDGKEHLVSMGSYGIGPSRLVAAVIEASHDENGIIWPKSIAPFDFGIINMKPNDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y+ L + G D   DD  E+ GS+FA  DL+G P Q+IVG K ++ ++VEIK 
Sbjct: 361 CTRACETLYSGLMQAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPKSIAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVIN 436
           R TG+++ +++E V+N
Sbjct: 421 RKTGVKKSLTVENVLN 436


>gi|13471387|ref|NP_102953.1| prolyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|81855688|sp|Q98KS5|SYP_RHILO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14022129|dbj|BAB48739.1| proline-tRNA ligase [Mesorhizobium loti MAFF303099]
          Length = 442

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 265/434 (61%), Positives = 339/434 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRY+ YGKEMLR+ DR D+ M+YGPT+EE++T+IFR+
Sbjct: 61  QNRAGALEILMPTIQSADLWRESGRYNDYGKEMLRIKDRQDRDMLYGPTNEEMVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG++ +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGARSAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QVFC +D++   +P  NTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVFCHRDYLSLAVPGANTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H+E  ++ +PE+ +VSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDGEIADIVKTWTTPYAATDEMHDEAAWEKVPESDKVSARGIEVGHIFHFGEKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+   GSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF I LIN+K  D  
Sbjct: 301 KVTGPDGKDHFASGGSYGIGPSRLVAAIIEASHDENGIIWPDAVAPFDIGLINMKVGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E++ A  +  G DV +DD  ++ G +FA ADL+G P QVIVG + V+  +VEIK+
Sbjct: 361 CDRVSEELNAAFTAAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEVEIKN 420

Query: 421 RLTGIREDMSLEEV 434
           R TG RE + + + 
Sbjct: 421 RRTGERETLPIADA 434


>gi|254488857|ref|ZP_05102062.1| prolyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214045726|gb|EEB86364.1| prolyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 446

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/446 (52%), Positives = 322/446 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRYDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+  LF  +P++++ +ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVLEEFTSRYARTDETHDAALFSEVPQDRQRTARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  ++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADSACQALYDSITALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E+M+ E+ +   +  ++ +R
Sbjct: 421 RRTGESEEMAPEDAVQKIAEIYAKHR 446


>gi|49475642|ref|YP_033683.1| prolyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|81827712|sp|Q6G3A4|SYP_BARHE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49238449|emb|CAF27677.1| Prolyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 441

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 269/439 (61%), Positives = 339/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIISHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ES RYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESDRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YIRSYKDLPLNLYHIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYEGSKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGG LSHEFI+LA+TGE+ +FC K F++  +P  + DF 
Sbjct: 181 YLRTFSCLGLKAIPMRADTGPIGGKLSHEFIILAETGESAIFCDKHFLELTVPDSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L +IV+QWT+ YAAT ++H+E+ +  + +N R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAILANIVKQWTSFYAATEEMHDEEEWAKISDNNRLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAAVIE+SHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHLVSMGSYGIGPSRLVAAVIEASHDENGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L   G D   DD  E+ GS+FA  DL+G P Q+IVG K V+ ++VEIK 
Sbjct: 361 CTHACETLYKGLRYAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPKSVAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TGI++ +++E V+N  S
Sbjct: 421 RKTGIKKSLTVENVLNQFS 439


>gi|307942137|ref|ZP_07657488.1| prolyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307774423|gb|EFO33633.1| prolyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 443

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 236/444 (53%), Positives = 318/444 (71%), Gaps = 1/444 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLP+G + L  +  I+ EE
Sbjct: 1   MRLSKYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPMGHRVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+++ +PT+QSA+LW ESGRYD+YGKEMLR+ DR+++ +++GPT+EE++TDIFR 
Sbjct: 61  QNRAGAVQLLMPTIQSAELWRESGRYDAYGKEMLRITDRHERDILFGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKESAVESYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPM+AE+GPIGGDLSHEFIVLADTGE++V+C  D++    P E+ +F 
Sbjct: 181 YLRTYKRMGLTAIPMKAETGPIGGDLSHEFIVLADTGESEVYCHADYLTKQTPGEDVNF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D      + +  +   A    V        +PE+KR+ ARGIEVG  FYFGTKYS PM A
Sbjct: 240 DGDLNPIVNDWTSHYAATEDVVDKAAFEAKVPEDKRIVARGIEVGQTFYFGTKYSEPMGA 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G+DGK+  V MGSYG+G  R++ A+IE+SHD  GIIW  SVAPF + LIN+K  D+ 
Sbjct: 300 KVAGSDGKEVPVHMGSYGVGVSRLLGALIEASHDDAGIIWHKSVAPFHVGLINLKPGDET 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA+    G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K+
Sbjct: 360 TDAACEDLYAKFEAAGVEVLYDDTDNRAGAKFASMDLIGLPYQVVAGPRGLKDGVLEVKN 419

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG +E ++ E  +N      ++
Sbjct: 420 RATGEKEMLTPEATLNKLVAALTS 443


>gi|319783000|ref|YP_004142476.1| prolyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168888|gb|ADV12426.1| prolyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 442

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/434 (60%), Positives = 340/434 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR D+ M+YGPT+EEV+T+I R+
Sbjct: 61  QDRAGALEILMPTIQSADLWRESGRYDDYGKEMLRIKDRQDRDMLYGPTNEEVVTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG++ +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGARAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QV+C +D++   +P  NTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVYCHRDYLALDVPGANTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H+E  ++ + E+ +VSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDAEIADIVKTWTTPYAATDEMHDEAAWEKIGESDKVSARGIEVGHIFHFGDKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+V  GSYGIG  R+VAA+IE+SHD  GIIWP++VAPF I LIN+KA D  
Sbjct: 301 KVTGPDGKDHFVSGGSYGIGPSRLVAAIIEASHDDNGIIWPEAVAPFDIGLINMKAGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   C++++A     G DV +DD  ++ G +FA ADL+G P QVIVG + V+  ++EIK+
Sbjct: 361 CDGVCDELHAAFVAAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEIEIKN 420

Query: 421 RLTGIREDMSLEEV 434
           R TG RE + + + 
Sbjct: 421 RKTGERETLPIADA 434


>gi|254469374|ref|ZP_05082779.1| prolyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211961209|gb|EEA96404.1| prolyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 441

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 255/443 (57%), Positives = 334/443 (75%), Gaps = 3/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLPLG + L+ +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYAWLPLGHRVLNKIQRIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRSGAVQLLMPTIQPADLWRESGRYDAYGKEMLRIEDRHEREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E S  +Y +MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKERSTEAYRRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM+A++GPIGGDLSHEFIVLA TGE++VF  KD +D PIP E+TDFD
Sbjct: 181 YLRTFARMGLTAIPMKADTGPIGGDLSHEFIVLASTGESEVFLDKDILDLPIPGEDTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +S   I+EQWT PYAAT ++++E  F ++ E+K+VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 GDLS--GIIEQWTTPYAATDEMYDEAAFGAVAEDKKVSARGIEVGHIFHFGTKYSEPMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+GK+  VQMGSYGIG  R++ A+IE+ HD  GIIWP  VAPF + LIN+KA  + 
Sbjct: 299 KVMTAEGKEVPVQMGSYGIGVSRLLGAIIEACHDDDGIIWPKEVAPFHVGLINMKAGSE- 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C + CE +YA L K G +V +DD     G +FA  DL+G P Q++VG + +   +VE+K 
Sbjct: 358 CDEVCESVYAELEKAGIEVLYDDRKTSAGQKFASMDLIGLPYQLVVGPRGLKTGEVEVKD 417

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R  G RE ++ E  +N       
Sbjct: 418 RAAGDREMLTPEAAVNKLISALK 440


>gi|89070126|ref|ZP_01157455.1| prolyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89044243|gb|EAR50389.1| prolyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 466

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 236/440 (53%), Positives = 318/440 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q   GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQAGAGIYSWLPLGYRVLKKIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G   + +PTLQ+A+LW ESGRYD+YG EMLR+ DR+D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHHPVLMPTLQTAELWRESGRYDAYGPEMLRIRDRHDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVASYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLRFGEREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +++ ++T+ YA T + H+E LF  +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAQCEAVMAEFTSRYARTDETHDEALFAEVPEARRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R+V A+IE++HD KGI+WP+ V PF + L+N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLVGALIEANHDDKGIVWPEGVTPFHVGLVNLKTGDGD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KIY +L+  G +V +DD  E+ G++FA  DL+G P +V VG + + +  VE+  
Sbjct: 361 ADAACQKIYDQLTACGLEVLYDDRDERAGAKFATMDLIGLPWRVTVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+++ + + +    
Sbjct: 421 RRTGDSEEIAPDALTDRLCE 440


>gi|304391639|ref|ZP_07373581.1| prolyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303295868|gb|EFL90226.1| prolyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 451

 Score =  521 bits (1343), Expect = e-146,   Method: Composition-based stats.
 Identities = 257/440 (58%), Positives = 339/440 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLP+L+E PR+AEIASH+LMLR GMI Q S GIYSWLPLG K L  V  I+REE
Sbjct: 1   MRLTQYFLPVLKEAPREAEIASHQLMLRAGMIKQQSAGIYSWLPLGLKVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++TDIFR+
Sbjct: 61  QNRAGAVEVLMPTIQSADLWRESGRYDDYGKEMLRIQDRHERDMLFGPTNEEMITDIFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  + ++ +Y +MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLNADAARAAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IPMRA++GPIGGDLSHEF++LADTGE++VFC  DF    +P    D+ 
Sbjct: 181 YLRTFDRLGVKAIPMRADTGPIGGDLSHEFLILADTGESEVFCHSDFSKKTVPDAGVDYS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   +  IV+ WT+ YA T ++H+E L+  +PE+++++ARGIEVGHIF FG+KYS PM A
Sbjct: 241 DDALIAGIVDDWTSGYARTDEMHDEALWAEVPEDEQLNARGIEVGHIFNFGSKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V+MGSYGIG  RVVAA++E+ HD  GIIWPDSVAPF + LIN+++ D+V
Sbjct: 301 KVTGPDGKDVPVEMGSYGIGPSRVVAALVEAGHDENGIIWPDSVAPFDVGLINLRSGDEV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA+LS  G DV +DD   + G +FA+ADL+G P Q+IVG + +   +VE+K 
Sbjct: 361 TDAACDDMYAQLSAAGLDVLYDDTDGRAGGKFALADLIGLPWQLIVGPRGLKTGEVELKA 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +G R  +S++  IN  + 
Sbjct: 421 RASGERHTVSIDAAINQLTA 440


>gi|56696018|ref|YP_166372.1| prolyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|81820109|sp|Q5LUD3|SYP_SILPO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56677755|gb|AAV94421.1| prolyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 238/449 (53%), Positives = 322/449 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q   GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQIVSHRLMLRAGMIKQAQAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M++GPT+EE++TDIFR 
Sbjct: 61  QIRAGHIPMLMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLFGPTNEELITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D  +     D+D
Sbjct: 181 YIRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSKVTDIRLGEREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E +F+ +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCRAVMEEFTSLYARTDETHDEAVFNQIPEERRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDGE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+++YA LS +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDQLYAALSAIGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R TG   ++S EE +   +  ++ + P L
Sbjct: 421 RKTGESVELSPEEAVKKVADIYAPHHPHL 449


>gi|315499825|ref|YP_004088628.1| prolyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315417837|gb|ADU14477.1| prolyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 439

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/440 (55%), Positives = 327/440 (74%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y LP+L+ENP +A+I SH+LMLRTGMI Q + GIY+WLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYLLPLLKENPSEAQIVSHRLMLRTGMIRQEAAGIYAWLPLGLRVLRKIEKIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ M+YGPT+EE++T+IFR 
Sbjct: 61  MQRAGAVELLMPTLQLADLWRESGRYDDYGQEMLRIKDRHEREMLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF++
Sbjct: 121 TVKSYKDLPMNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEASARKAYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PMRA++GPIGGDLSHEFI+LA+TGE+ VFC KD +D P P  + D+D
Sbjct: 181 YLNTFSRLGLKAVPMRADTGPIGGDLSHEFIILAETGESAVFCHKDLVDMPAPGADVDWD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+     +V+Q T+ YAAT ++H+E  F+++P +K++SARGIEVGHIFYFG KYS PM A
Sbjct: 241 DLQG---LVDQRTSLYAATEEMHDEAAFNAVPADKQLSARGIEVGHIFYFGEKYSAPMGA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              GADG    V MGSYG+G  R++  +IE+SHD  GIIWP+SV PF ++L+N++  D+ 
Sbjct: 298 KVSGADGSQVNVHMGSYGVGVSRLIGGIIEASHDEAGIIWPESVTPFDVALVNLRVGDEA 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK Y  L   G DV + D  ++ G++FA  DL+G P Q+I+G K +++ +VEIKH
Sbjct: 358 CDAACEKAYKALKAAGRDVLYHDTDDRPGAKFASMDLIGIPWQLIIGPKGIAEGQVEIKH 417

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG R   + + V+   + 
Sbjct: 418 RATGERHTAAFDAVLEQLTK 437


>gi|329889349|ref|ZP_08267692.1| prolyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
 gi|328844650|gb|EGF94214.1| prolyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
          Length = 438

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 237/441 (53%), Positives = 319/441 (72%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+R+E
Sbjct: 1   MRLSRYFLPILKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLRKIEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR+
Sbjct: 61  QVKAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ +Y +MF +
Sbjct: 121 YVKSYKALPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDEASARIAYKRMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PMRA++GPIGGDLSHEFIVLA+TGE++VFC +  ++   P  N    
Sbjct: 181 YLNTFARLGLKAVPMRADTGPIGGDLSHEFIVLAETGESEVFCDRKLVEMAAPGHNLS-- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
            +  L  +  + TA YAAT ++H+   F++      R+SARGIEVGHIFYFGTKYS  M 
Sbjct: 239 -VEQLEGVFNERTALYAATEEMHDAAQFETQTAEGDRLSARGIEVGHIFYFGTKYSAAMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G +G+D  V MGSYG+G  R++ A+IE+SHD  GIIWPDSVAPF + +IN++A D+
Sbjct: 298 AKVAGPNGQDTEVHMGSYGVGVSRLLGAIIEASHDEGGIIWPDSVAPFDVVVINLRASDE 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE   A+L  +G DV +DD  E+ G +FA ADL+G P Q+ +G K ++D  VE+K
Sbjct: 358 AVSAACEDAVAKLEALGKDVLYDDTDERPGGKFATADLIGVPWQLTIGPKGLADGVVELK 417

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R TG ++ +SL+  +   + 
Sbjct: 418 RRATGEKQSLSLDAALELLTK 438


>gi|163868357|ref|YP_001609566.1| prolyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|189083488|sp|A9IUL1|SYP_BART1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161018013|emb|CAK01571.1| Prolyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 441

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 267/439 (60%), Positives = 338/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+ MLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIVSHRFMLRAGMIRQQTSGIYSWLPLGKKVLDKVCKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRA++GPIGG LSHEFI+LA+TGE+ +FC K F++  +P+ + DF 
Sbjct: 181 YLRTFSRLGLKAIPMRADTGPIGGKLSHEFIILAETGESAIFCDKQFLELSVPNSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L+  V+QWT+ YAAT ++HNE+ +  L E  R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLDDTVKQWTSFYAATEEMHNEEEWARLSEENRLSARGIEVGHIFHFGTKYSAPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD KGIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHVVSMGSYGIGPSRLVAAAIEASHDEKGIIWPKSMAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L   G D F DD  E+ GS+FA  DL+G P Q+IVG   ++ ++VEIK 
Sbjct: 361 CTQACEFLYQGLKDAGFDPFLDDRNERPGSKFATMDLIGLPTQIIVGPNSIAHNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG ++ + +E+V++  S
Sbjct: 421 RKTGAKKSLKVEDVLSQLS 439


>gi|294852177|ref|ZP_06792850.1| prolyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820766|gb|EFG37765.1| prolyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 435

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 255/434 (58%), Positives = 332/434 (76%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +PIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREEQNR GA 
Sbjct: 1   MPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREEQNRAGAN 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS+++SY++
Sbjct: 61  EILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRSYVRSYKD 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVSYLR F R
Sbjct: 121 LPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVSYLRTFAR 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF +   L  
Sbjct: 181 VGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTD 240

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A  +G DG
Sbjct: 241 IVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDG 300

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ C    EK
Sbjct: 301 KEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEGCDGVSEK 360

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K R TG R+
Sbjct: 361 LYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQ 420

Query: 428 DMSLEEVINYASHR 441
            + +E  IN  + +
Sbjct: 421 SLGIEAAINMLTAQ 434


>gi|83954043|ref|ZP_00962763.1| prolyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83841080|gb|EAP80250.1| prolyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 446

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/439 (53%), Positives = 316/439 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGR+D+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRFDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVGSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYTFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF  +P  ++ SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVMEEFTSRYARTDETHDEALFAEVPAERQRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYASLQALGLDPLYDDTKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG  E+M+ E  +   +
Sbjct: 421 RRTGESEEMTPEAAVEKIA 439


>gi|83942873|ref|ZP_00955333.1| prolyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83845881|gb|EAP83758.1| prolyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 446

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 237/439 (53%), Positives = 315/439 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGR+D+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRFDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVGSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYTFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF  +P  ++ SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVMEEFTSRYARTDETHDEALFAEVPAERQRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNALYASLQALGLDPLYDDTKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG  E+M+ E  I   +
Sbjct: 421 RRTGESEEMTPEAAIEKIA 439


>gi|260430967|ref|ZP_05784938.1| prolyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414795|gb|EEX08054.1| prolyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 446

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/440 (54%), Positives = 314/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQAAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +P LQSADLW ESGRYD YG+EMLR+ DR+ + M+Y PT EE++TDIFR 
Sbjct: 61  QIRAGHIPIQMPILQSADLWRESGRYDDYGQEMLRMKDRHGRDMLYTPTAEELVTDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +   + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDIRLGQRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +I+E++T+ YA T + H+E LF  +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 DKAQCQAIMEEFTSLYARTDETHDEALFQQVPEERRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKQVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KIY  L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDKIYKALTALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E++S E  +   + 
Sbjct: 421 RRTGESEELSPEAAVTRIAE 440


>gi|114799658|ref|YP_760468.1| prolyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123323241|sp|Q0C1C5|SYP_HYPNA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114739832|gb|ABI77957.1| prolyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 439

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 248/439 (56%), Positives = 330/439 (75%), Gaps = 2/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+FLP+ +E P DA I SH+LMLRTGMI Q+  GIYSWLPLG + L  +  I+REE
Sbjct: 1   MRLSKFFLPVSKEAPADAAIVSHQLMLRTGMIRQNGAGIYSWLPLGYRVLKRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIEM +PTLQ ADLW ESGRYD YGKEMLR+ DR+++ M+YGPT+EE++TD+FR+
Sbjct: 61  MNRAGAIEMLMPTLQQADLWRESGRYDDYGKEMLRIKDRHERDMLYGPTNEELITDVFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y  Q KFRDE+RPRFGVMR REFLMKDAYSFDLT E ++ +Y KMF +
Sbjct: 121 YVKSYKQLPLNLYHQQWKFRDEVRPRFGVMRGREFLMKDAYSFDLTEEDARAAYRKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GL +IPMRA++GPIGGDLSHEFI+LADTGE+ VFC K  +D P P  + DF+
Sbjct: 181 YLNAFDRMGLTAIPMRADTGPIGGDLSHEFIILADTGESAVFCDKALLDLPAPGLDLDFE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             ++    V + T  YAAT ++H+E  F++LPE++RVSARGIEVGHIF+FGTKYS PM+A
Sbjct: 241 SDLT--PFVTERTGYYAATEEMHDEAAFNALPEDRRVSARGIEVGHIFFFGTKYSKPMNA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DG+   VQMGSYGIG  R++ A+IE+ HD  GI+WP+SVAPF + LIN++  ++ 
Sbjct: 299 VVQGPDGQMVPVQMGSYGIGVSRLLGAIIEACHDENGIVWPESVAPFDVGLINMRPGNEA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC  +YA L+  G +V +D+  ++ G++FA  DL+G P Q  VG + V++ KVE+K+
Sbjct: 359 CDAACNTLYAALTAAGREVLYDETDDRAGAKFARMDLIGLPWQTTVGPRGVTEGKVEVKN 418

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG + D+ +E+++    
Sbjct: 419 RKTGEKHDVKIEDMLAQLK 437


>gi|188580267|ref|YP_001923712.1| prolyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|226701310|sp|B1ZA28|SYP_METPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|179343765|gb|ACB79177.1| prolyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 441

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 254/439 (57%), Positives = 334/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAVEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFDL    ++HSYNK+FVS
Sbjct: 121 SARSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDLDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFETLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDRAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDSWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGQERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I + L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDAACAEIQSALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G RE +   ++     
Sbjct: 421 RASGERETLDPVDLPARIR 439


>gi|329850610|ref|ZP_08265455.1| prolyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328840925|gb|EGF90496.1| prolyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 443

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 246/438 (56%), Positives = 332/438 (75%), Gaps = 4/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP+L+ENP +A+I SH+LMLRTGMI Q + GIY+WLPLG K L  V  I+ EE
Sbjct: 1   MRLSRFFLPLLKENPAEAQIVSHRLMLRTGMIRQQAAGIYAWLPLGLKVLRKVERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+I++ +PTLQ ADLW ESGRY+ YG+EMLR+ DR+D+ ++YGPT EE +T++FR+
Sbjct: 61  MARAGSIQLLMPTLQLADLWRESGRYEDYGQEMLRIKDRHDRDLLYGPTAEEAVTEVFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQI  KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF++
Sbjct: 121 SVKSYKDLPLNLYQISWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEASARKAYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFI+LADTGE+ VFC KD +D P P  + D++
Sbjct: 181 YLNTFSRMGLKAVPMRADTGPIGGDLSHEFIILADTGESAVFCHKDLVDMPAPGHDVDWN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+     +V+Q TA YAAT ++H+E  F  +PE+K++SARGIEVGHIFYFG KYS PM A
Sbjct: 241 DLQG---LVDQRTALYAATEEMHDEAAFGEVPEDKKLSARGIEVGHIFYFGEKYSKPMKA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG+   V MGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF +++IN++  D+ 
Sbjct: 298 TVNGPDGE-VTVHMGSYGVGVSRLLGAIIEASHDEAGIIWPESVAPFDVAVINLRPGDEA 356

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK YA L+  G DV ++D  E+ G++FA  DL+G P Q+I+G K +++ KVE+K 
Sbjct: 357 CDAACEKAYAALTAAGRDVLYNDTDERPGAKFASMDLIGIPWQLIIGPKGLAEGKVELKQ 416

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R+    ++V+N  
Sbjct: 417 RATGERQTALFDDVLNQL 434


>gi|255262231|ref|ZP_05341573.1| prolyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255104566|gb|EET47240.1| prolyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 445

 Score =  517 bits (1333), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/444 (52%), Positives = 318/444 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP DA+I SH+LMLR GMI Q + GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPADAQIVSHRLMLRAGMIKQSAAGIYSWLPLGYKVLKNIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + G + M +PT+QSADLW ESGRYD YG+EMLR+ DR+ + M+Y PT EE++T+IFRS
Sbjct: 61  QAKAGHMPMLMPTMQSADLWRESGRYDDYGEEMLRVTDRHGRDMLYTPTAEELITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY+++P T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDMPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + DFD
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLSFGDRDIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +I++++T  YA T + H+E +F+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVDQCAAIMQEFTTKYARTDETHDEAVFNEVPEERRRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVAVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGILNMKQGDED 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ IY   + +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 TDAACQAIYDSFAALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R T   E+M+ E+ +   +  +++
Sbjct: 421 RRTSESEEMTAEQAVEKVAAIYAS 444


>gi|254441019|ref|ZP_05054512.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198251097|gb|EDY75412.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 453

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/440 (53%), Positives = 312/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+PRDA I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKESPRDATIVSHQYMLRAGMIKQSSAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD YG EMLR+ DRN   ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGHIAMLMPTIQSADLWRESGRYDDYGDEMLRITDRNKNDLLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY+ LP T Y IQ KFRDE RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKALPLTLYHIQWKFRDERRPRFGVMRGREFYMKDGYTFDLTKEDAMHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDAAVTDLSFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+     ++E++TA YA T + H++ LFD++P +++ +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DVTQCAEVMEEFTAKYARTDETHDQALFDAIPADRQRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA ++ +G +  +DD  E+ GS+F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQSLYAAVAALGLEALYDDRDERAGSKFGTMDMIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+M  E+ I     
Sbjct: 421 RKTGESEEMPPEQAIAKIGE 440


>gi|163795649|ref|ZP_02189615.1| Prolyl-tRNA synthetase [alpha proteobacterium BAL199]
 gi|159179248|gb|EDP63781.1| Prolyl-tRNA synthetase [alpha proteobacterium BAL199]
          Length = 437

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/438 (55%), Positives = 315/438 (71%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YFLP +++ PRDAEI SH+LMLR GMI Q S GIYSWLPLG + L  +  ++REE
Sbjct: 1   MRLSGYFLPTMKDTPRDAEIVSHRLMLRAGMIQQASAGIYSWLPLGLRVLKKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  G  E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+D+ M++GPT+EEV+TDIFR+
Sbjct: 61  QDAAGWQEVLMPTIQSADLWRESGRYDDYGKEMLRIKDRHDRDMLFGPTNEEVITDIFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H++SY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +K +YN+ FV+
Sbjct: 121 HVRSYKALPGRLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDFEAAKRAYNRQFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RLGLK+IPM A+SGPIGGDLSHEFI+LADTGE++VFC KD++         D+D
Sbjct: 181 YLKTFDRLGLKAIPMAADSGPIGGDLSHEFIILADTGESEVFCHKDWLTSEAVPATVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +    IV+   A YAAT + H+      + E   V  RGIEVGHIFYFGTKYS P+ A
Sbjct: 241 ADLQ--PIVDACLARYAATDEKHDPATC-PVAEADLVRTRGIEVGHIFYFGTKYSDPLGA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYG+G  R+V  +IE+SHD  GI+WP+ VAPFK+ L+N+K  D  
Sbjct: 298 KVAGPDGKDVTVHMGSYGVGVSRLVGGIIEASHDDAGIVWPEPVAPFKVGLVNLKVGDAA 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A E +Y +L K G +V  DD  E+ G++ A  DL+G P QV+VG + +++  VE+K+
Sbjct: 358 CDSATEGLYGKLLKAGIEVLMDDRDERPGAKLAGMDLIGLPWQVVVGPRGLANGIVEMKN 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG +++M+ +  +N  
Sbjct: 418 RKTGAKDEMTPDAALNRL 435


>gi|121602198|ref|YP_989086.1| prolyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|152112216|sp|A1USY3|SYP_BARBK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120614375|gb|ABM44976.1| prolyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 441

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 258/440 (58%), Positives = 328/440 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH LMLR G+I Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEIISHCLMLRAGIIRQQTSGIYSWLPLGKKVLDKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+S+PT+QSADLW ESGRYD YG EMLR+ DR ++ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEISMPTIQSADLWRESGRYDDYGLEMLRIKDRQERDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   YQIQ KFRDE+RPRFGVMRSREFLMKD YSFDL  E +K SYN+MF++
Sbjct: 121 YVRSYKDLPLNLYQIQWKFRDEIRPRFGVMRSREFLMKDGYSFDLDYESAKTSYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRA++GPIGG+LSHEFI+LA TGE+ VFC K F++   P  + DF 
Sbjct: 181 YLRTFSRIGLKVIPMRADTGPIGGELSHEFIILAKTGESAVFCDKRFLEMTAPPVSVDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L  IV+QWTA YA T ++HN + +  + ++ ++SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DNVVLTDIVKQWTALYATTEEMHNAEEWAQICKSNQLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK++ V MGSYGIG  R+VAA IE+SHD  GIIWP  + PF   +IN K+ +  
Sbjct: 301 KVMGRDGKEYPVFMGSYGIGPSRLVAAAIEASHDENGIIWPKPITPFDFGIINTKSDNAK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L   G D   DD  E+ G++FA  DL+G P Q+IVG K  +  +VEIK 
Sbjct: 361 CYGMCETLYQGLVNAGFDPLLDDRNERPGAKFATMDLIGLPTQIIVGPKSAAQDEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG +E +++E  +N  S 
Sbjct: 421 RKTGTKEVLTVEAALNRLSA 440


>gi|296536135|ref|ZP_06898264.1| proline--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263547|gb|EFH10043.1| proline--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 436

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 239/438 (54%), Positives = 322/438 (73%), Gaps = 5/438 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+E P +A IASHKLMLR GMI Q S GIY+WLPLG + L  V+ I+REE
Sbjct: 1   MRLSRAFLPTLKEVPAEAAIASHKLMLRAGMIRQTSAGIYAWLPLGLRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW +SGRYD YGKEMLR+ DR+++ M++GPT+EE++TD+F+S
Sbjct: 61  QDAAGAQEILMPTIQSAELWKQSGRYDDYGKEMLRITDRHEREMLFGPTNEEMVTDLFKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E ++ SY KMFV+
Sbjct: 121 YAKSYRDLPRNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDAEAARLSYKKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA+TGE+QV+  KD ++F + ++  D++
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDLSHEFIILAETGESQVYLHKDLLEFDVLAQKPDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L+  V+ WT+ YAAT ++H+E  +++L    +VSARGIEVGHIFYFG KYS  M  
Sbjct: 241 G--DLDPTVDFWTSRYAATDEMHDEAAWNALGAENQVSARGIEVGHIFYFGEKYSKAMGL 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG     QMGSYGIG  R++ A+IE++HD  GI WPD+VAPF+ +++N+K  D  
Sbjct: 299 TVAGPDGNPVIPQMGSYGIGVSRLLGALIEANHDDAGIKWPDAVAPFRCAILNLKPGDLA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EK+YA L   G D  +DD GE+ G +F  ADL G+P Q I+G +  ++  +E+K 
Sbjct: 359 TDALSEKLYAAL---GGDAVYDDRGERAGVKFNDADLAGYPWQAIIGPRGAANGIIELKR 415

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R+++S+E  +   
Sbjct: 416 RATGERQEVSIEAALAQI 433


>gi|254511426|ref|ZP_05123493.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221535137|gb|EEE38125.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 456

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/440 (52%), Positives = 313/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 11  MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQAAAGIYSWLPLGFKVLRKLENIVHEE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +P LQSADLW ESGRYD YG+EMLR+ DR+D+ M++ PT EE++TDIFR 
Sbjct: 71  QARAGHIAIQMPILQSADLWRESGRYDGYGQEMLRMKDRHDRDMLFTPTAEELVTDIFRG 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 131 HVSSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTMEDALHAYNRHLVS 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D      + D+D
Sbjct: 191 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDRDIDYD 250

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +     +I++++T+ YA T + H+E LFD +PE++R  ARGIEVG IFYFGT YS  M A
Sbjct: 251 NRDQCQAIMDEFTSKYARTDETHDEALFDQVPEDRRRVARGIEVGQIFYFGTNYSEAMGA 310

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 311 TVQGPDGKPVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 370

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 371 ADAACDTLYAALTALGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 430

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E++S E  +   + 
Sbjct: 431 RRTGESEELSPEAAVAKIAE 450


>gi|260575893|ref|ZP_05843888.1| prolyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259021819|gb|EEW25120.1| prolyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 445

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/440 (53%), Positives = 315/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFLPVLKENPAEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRQKRELLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVTSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA TGE++VF      D  + +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAATGESEVFYDSAVTDIRLGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     ++++++T+ YA T + H+E LF+++PE +R SARGIEVG IF+FGTKYS  M A
Sbjct: 241 DKAQCAAVMQEFTSLYARTDETHDESLFNAIPEERRRSARGIEVGQIFFFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    VQMGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTPDGSRVPVQMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDNG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IY  L   G D  +DD  E+ G++FA  DL+G P ++ VG + +++ KVE+  
Sbjct: 361 TDAACEAIYKALKARGLDPLYDDRDERAGAKFATMDLIGLPWRITVGPRGLANGKVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +G+ E+MS E+ +     
Sbjct: 421 RRSGVSEEMSAEDAVARVVE 440


>gi|197105248|ref|YP_002130625.1| prolyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|226701316|sp|B4RBZ9|SYP_PHEZH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|196478668|gb|ACG78196.1| prolyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 439

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/441 (53%), Positives = 320/441 (72%), Gaps = 3/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG K L  +  ++REE
Sbjct: 1   MRLSRYFMPTLREAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLKVLKKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ ++YGPT EEV+TDIFR+
Sbjct: 61  MDRAGAIEVLMPTLQLADLWRESGRYDDYGEEMLRIKDRHERDLLYGPTAEEVITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF +
Sbjct: 121 YIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDIDEAAARRAYNRMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL ++ RLGLK+IP+RA++GPIGGDLSHEFI+LADTGE+QVF  +D ++   P  + D  
Sbjct: 181 YLNVYARLGLKAIPVRADTGPIGGDLSHEFIILADTGESQVFAHRDLVEMGAPGPDID-- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  +V+Q T  YAA+ ++H++  F++  PE+KR++ARGIEVGHIFYFG KYS PM+
Sbjct: 239 WDGDLEPLVQQRTRLYAASDEMHDQARFETEAPEDKRMTARGIEVGHIFYFGEKYSRPMN 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG + +V MGSYG+G  R+V A+IE+SHD  GI+WPDSVAPF  +++N++  + 
Sbjct: 299 AKVAGPDGAERFVHMGSYGVGVSRLVGAIIEASHDEAGIVWPDSVAPFGAAVVNLRPGEA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E+ Y  L   G +   DD  E+ G++FA  DL+G P Q+IVG K V++  VEIK
Sbjct: 359 AVDAVAEQAYGALQAAGKEPLLDDRDERPGAKFASLDLVGVPWQLIVGPKGVAEGVVEIK 418

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R TG R+ + L+  +   + 
Sbjct: 419 RRATGERQTLPLDAALKAITA 439


>gi|254466898|ref|ZP_05080309.1| prolyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206687806|gb|EDZ48288.1| prolyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 451

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/446 (52%), Positives = 316/446 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q S GIYSWLPLG K L  + +I+ +E
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGFKVLKKIESIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M + T+Q ADLW ESGRYD YG+EMLR+ DR+D+ M++GPT+EE++TDIFR+
Sbjct: 61  QIRAGHIPMLMATMQPADLWRESGRYDDYGQEMLRIKDRHDRDMLFGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQ+Q KFRDE+RPRFGVMR REF MKD Y+FDL+ E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTMYQVQWKFRDEIRPRFGVMRGREFYMKDGYNFDLSKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSESMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++YA LS  G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNQLYAALSAAGLDPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E++S EE +      +  +R
Sbjct: 421 RRTGESEELSPEEAVKKVVSIYEKHR 446


>gi|316933915|ref|YP_004108897.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601629|gb|ADU44164.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 439

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 241/440 (54%), Positives = 322/440 (73%), Gaps = 1/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLADTGE+ VF  +D ++ P+P EN D+ 
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLADTGESGVFIDRDVLNLPVPDENVDY- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D      I +  +   A        +    +PE  R++ RGIEVG IFYFGTKYS  M A
Sbjct: 240 DADLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKA 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG D  +  GSYG+G  R+V A+IE+ HD  GIIWP++VAPF+++++N+K  D  
Sbjct: 300 NVAGPDGTDAPIHGGSYGVGVSRLVGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P QV VG + +++ KVE+K 
Sbjct: 360 TDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQVHVGPRGLAEGKVELKR 419

Query: 421 RLTGIREDMSLEEVINYASH 440
           R  G RE+++L +++   + 
Sbjct: 420 RSDGSRENLALADLVARLTQ 439


>gi|27379988|ref|NP_771517.1| prolyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|81841648|sp|Q89KM8|SYP_BRAJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27353142|dbj|BAC50142.1| prolyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 439

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/439 (56%), Positives = 333/439 (75%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGFRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QDRSGALELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ +YNKMFV+
Sbjct: 121 YVKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLNEAAARVAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VF ++D +D P+P E+ D++
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFINRDVLDLPVPGEDVDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH+   F+  +PE KR++ RGIEVG IFYFGTKYS PM 
Sbjct: 241 SDLT--PIIKQWTSVYAATEDVHDAARFEQEVPEAKRLNTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GI WP++VAPF+  ++N+K  D 
Sbjct: 299 AMVAGPDGVDVPIHGGSYGVGVSRLLGAIIEACHDDAGIKWPEAVAPFRAVVLNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+YA L   G DV +DD  ++ G++FA ADL+G P Q+++G K ++D KVE+K
Sbjct: 359 AVDAACEKLYAELQAKGVDVLYDDTDQRAGAKFAAADLIGIPWQIMIGPKGLADGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE MS  + +   
Sbjct: 419 RRSDGSRETMSPADAVARL 437


>gi|118138193|pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138194|pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138195|pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138196|pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138197|pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138198|pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138199|pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138200|pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138201|pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138202|pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
 gi|118138203|pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
 gi|118138204|pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
          Length = 458

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/440 (56%), Positives = 335/440 (76%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 21  MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 81  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 201 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 260

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH    ++S  PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 261 GDLT--PIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 318

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 319 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 378

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 379 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 438

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++L +V+   +
Sbjct: 439 RRSDGARENLALADVVARLT 458


>gi|159043296|ref|YP_001532090.1| prolyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|189083497|sp|A8LQU6|SYP_DINSH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157911056|gb|ABV92489.1| prolyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 445

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 309/443 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRLMLRAGMIKQASAGIYSWLPLGYKVLRRIEEIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDAEITDLSFGDRQIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+    +++E++T+ YA T + H+   F  +PE +R SARGIEVG IFYFGTKYS  M A
Sbjct: 241 DVGQCQAVLEEFTSRYARTDETHDPDAFAKVPEARRRSARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    D     V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVIDKDQNQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+K G +  +DD  E+ G +FA  DL+G P ++ VG + +    VE+  
Sbjct: 361 ADAACEGLYDALTKAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKAGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++S E  +     R++
Sbjct: 421 RKTGESEELSPEAAVAKVVARYA 443


>gi|192291648|ref|YP_001992253.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|226701325|sp|B3Q7L2|SYP_RHOPT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|192285397|gb|ACF01778.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 438

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/440 (56%), Positives = 335/440 (76%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH    ++S  PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 299 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 359 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++L +V+   +
Sbjct: 419 RRSDGSRENLALADVVARLT 438


>gi|39935993|ref|NP_948269.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|81829575|sp|Q6N5P6|SYP_RHOPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39649847|emb|CAE28369.1| proline-tRNA ligase [Rhodopseudomonas palustris CGA009]
          Length = 438

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/440 (56%), Positives = 335/440 (76%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH    ++S  PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 299 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 359 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++L +V+   +
Sbjct: 419 RRSDGARENLALADVVARLT 438


>gi|91977335|ref|YP_569994.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|123762679|sp|Q135Z6|SYP_RHOPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91683791|gb|ABE40093.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
          Length = 439

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/440 (56%), Positives = 333/440 (75%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D ++ P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLNLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH+   ++S  PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIIQQWTSVYAATEDVHDAARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R+V A+IE+ HD  GI WP+ VAPF+++++N+K  D 
Sbjct: 299 ANVAGPDGADAPIHGGSYGVGVSRLVGAIIEACHDENGIKWPEEVAPFRVAILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L+  G DV +DD  ++ G++FA ADL+G P QV+VG K ++D KVE+K
Sbjct: 359 QTDAACEQLYRELAAKGVDVLYDDTDQRAGAKFATADLIGIPWQVLVGPKGLADGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE ++L E +   +
Sbjct: 419 RRSDGSRETIALAEAVARLA 438


>gi|294084092|ref|YP_003550850.1| prolyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663665|gb|ADE38766.1| prolyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 437

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/441 (52%), Positives = 320/441 (72%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P++A+IASH+LMLR GM+ Q S GIYSWLPLG++ LD +  I+REE
Sbjct: 1   MRLSQYFLPLLKETPKEAQIASHRLMLRAGMVQQSSAGIYSWLPLGKRVLDKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+Q A+LW ESGRYD YG EMLR+ DR+++ M+YGPT+EE +TDIFR+
Sbjct: 61  QNRAGALEILMPTIQPAELWQESGRYDDYGAEMLRIVDRHERNMLYGPTNEEQITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H++SY+ LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFDL  + ++ +YN+MFVS
Sbjct: 121 HVRSYKALPLNMYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDLDGDKARAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F R+GL +IPM A++GPIGGD+SHEFI+LA+TGE+ V+  KD+M+  +   + D D
Sbjct: 181 YLKTFARMGLTAIPMEADTGPIGGDMSHEFIILAETGESGVYFHKDWMNINL---DADID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L   V+++T+ YA   D+H+      +  ++ +S RGIE+GHIFYFGTKYS  M A
Sbjct: 238 YNADLQPFVDKYTSLYARADDMHDADNC-PVTADELMSLRGIEIGHIFYFGTKYSEAMGA 296

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   V MGSYGIG  R+V  +IE+SHD KGIIWPDSVAPF ++++N+K  D V
Sbjct: 297 TVSGPDGKAVPVHMGSYGIGVSRLVGGIIEASHDDKGIIWPDSVAPFGVAIVNLKPGDAV 356

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E++Y +    G +   DD  ++ G++ A  DL+G P Q++VG + + ++ VE+K 
Sbjct: 357 CDAEAERLYEQFDNAGLEPLLDDRNDRPGAKMASMDLIGIPWQIVVGPRGMENNMVEVKR 416

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG   +MS +  +    +R
Sbjct: 417 RKTGETAEMSPDSAVIKILNR 437


>gi|110679326|ref|YP_682333.1| prolyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|114152246|sp|Q168E6|SYP_ROSDO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109455442|gb|ABG31647.1| prolyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 451

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/440 (52%), Positives = 310/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YF+P+L+ENP +A+I SH+LMLR GMI Q++ GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFMPVLRENPAEAQIVSHRLMLRAGMIKQNAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QIRAGHVPMLMPTMQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFFMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H++ LF ++P  ++  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQGVMEEFTNLYARTDETHDQALFAAIPAERQRQARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKPTAVHMGSHGIGVSRLVGAIIEASHDEKGIIWPEGVTPFHCGIVNLKQGDTE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYASLRALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG   ++  EE I   + 
Sbjct: 421 RKTGESSELPPEEAIEKIAK 440


>gi|83858393|ref|ZP_00951915.1| prolyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83853216|gb|EAP91068.1| prolyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 442

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 245/441 (55%), Positives = 322/441 (73%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPVLKETPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PTLQ ADLW ESGRYD YGKEMLR+ DR+++ ++YGPT+EE++T+IFR 
Sbjct: 61  QDRAGAIELLMPTLQPADLWRESGRYDDYGKEMLRIVDRHERDLLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + +SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  EG+  +YNKMFV+
Sbjct: 121 YCRSYKDLPKILYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDYEGAVKAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLKS+PMRA++GPIGG LSHEFI+LA+TGE++VFC    +D P P E     
Sbjct: 181 YLNTFARMGLKSVPMRADTGPIGGKLSHEFIILAETGESEVFCDSRLVDMPAPGEVDFDG 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      V+Q TA YAAT ++H+   F++  PE +R+SARGIEVGHIF FGTKYS PM 
Sbjct: 241 DLQPY---VDQRTALYAATEEMHDAARFEAEVPEERRLSARGIEVGHIFNFGTKYSDPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DGK+  V MGSYG+G  R++ A+IE+SHD  G+IWP++VAPF   +IN++A D 
Sbjct: 298 AQVAGPDGKETAVHMGSYGVGVSRLLGAIIEASHDENGVIWPEAVAPFGAGVINMRAGDA 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C  A ++IY +L   G +   DD     G++FA  DL+G P QVIVG + + + K E+K
Sbjct: 358 DCAKAADEIYTKLDAAGLEPLLDDTAASAGAKFATMDLIGVPYQVIVGPRGLKEGKAEVK 417

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R +G R ++SLE+ +N    
Sbjct: 418 IRASGERHELSLEDAVNRLVE 438


>gi|126725673|ref|ZP_01741515.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704877|gb|EBA03968.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 470

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/445 (51%), Positives = 314/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP DA+I SH+LMLR GMI Q S GIYSWLPLG K L N+  I+ EE
Sbjct: 26  MRLSRYFLPVLKENPADAQIVSHRLMLRAGMIKQASAGIYSWLPLGLKVLRNIERIVHEE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + G I + +PT+QSADLW ESGRYD YG+EMLR++DR+   M+YGPT+EE +TDIFR+
Sbjct: 86  QAKAGHIPVLMPTVQSADLWRESGRYDDYGEEMLRISDRHGHDMLYGPTNEEQITDIFRA 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE RPRFGVMR REFLMKD Y+FD+  + + H+YN+  V+
Sbjct: 146 HVHSYKDLPLTLYQIQWKFRDERRPRFGVMRGREFLMKDGYNFDIDYDSAMHAYNRHMVA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GLK+IPMRA+SGPIGG+ +HEF+VLADTGE++VF   D +D        DFD
Sbjct: 206 YLRTYERMGLKAIPMRADSGPIGGEDTHEFLVLADTGESEVFYDSDILDLNFGDRVVDFD 265

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +   +V +WT PYA T + H+E L++ +PE +R S+RGIEVG IFYFGTKYS  M A
Sbjct: 266 DVSACAEVVTEWTTPYARTDETHDEALYNDIPEARRKSSRGIEVGQIFYFGTKYSDSMGA 325

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +     V MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N++  D+ 
Sbjct: 326 SVVDGEQNKVPVHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLRQGDEA 385

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +Y  L+  G +  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 386 TDGACGALYEALTAAGLEPLYDDRNERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 445

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  +++S+E  +      + N+
Sbjct: 446 RRTGESQELSIEAAVEAVVKVYENH 470


>gi|163740902|ref|ZP_02148295.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385893|gb|EDQ10269.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 451

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/446 (52%), Positives = 313/446 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR++DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGQEMLRISDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLADTGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLADTGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKQSPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACESLYEALTAAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R +G  E++S E  +      ++N++
Sbjct: 421 RRSGESEELSPEAAVQKIVEIYANHQ 446


>gi|115524551|ref|YP_781462.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|122296196|sp|Q07NK2|SYP_RHOP5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115518498|gb|ABJ06482.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
          Length = 439

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/441 (54%), Positives = 328/441 (74%), Gaps = 3/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARRAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C  + ++ P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESAVYCDSEVLNLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH  + FD  +P  +++  RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIIKQWTSVYAATEDVHEAERFDREVPAERKLHTRGIEVGQIFYFGTKYSEAMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R++ A+IE+ HD  GI WP++VAPF+ +++N+K    
Sbjct: 299 ALVAGPDGVEVPIHGGSYGVGVSRLLGAIIEACHDENGIKWPEAVAPFRAAILNLKQGAA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G++FA ADL+G P Q++VG K ++D  VE+K
Sbjct: 359 ETDAACEQLYRELIAKGVDVLYDDTDQRAGAKFATADLIGIPWQILVGPKGLADGTVELK 418

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R  G RE+++L E +   + 
Sbjct: 419 RRADGSRENVALAEAVARLTQ 439


>gi|163737417|ref|ZP_02144834.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161388943|gb|EDQ13295.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 451

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/446 (52%), Positives = 313/446 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR++DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGQEMLRISDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLADTGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLADTGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKQSPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACESLYEALTAAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R +G  E++S E  +      ++N++
Sbjct: 421 RRSGESEELSPEAAVQKIVEIYANHQ 446


>gi|86749715|ref|YP_486211.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|114152241|sp|Q2IWW0|SYP_RHOP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86572743|gb|ABD07300.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
          Length = 439

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/440 (56%), Positives = 332/440 (75%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D +  P+P E  D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLSLPVPDETVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH+   ++S  PE  R+  RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIIKQWTSVYAATEDVHDAVRYESEVPEANRLHTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R+V A+IE+ HD  GIIWP+ VAPF+++++N+K  D 
Sbjct: 299 ANVAGPDGTDAPIHGGSYGVGVSRLVGAIIEACHDDNGIIWPEEVAPFRVAILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L+  G DV +DD  ++ G++FA ADL+G P QV+VG K ++D K+E+K
Sbjct: 359 ATDAACEQLYKELAAKGVDVLYDDTDQRAGAKFATADLIGIPWQVLVGPKGLADGKIELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++L E +   +
Sbjct: 419 RRSDGSRENIALAETVARLA 438


>gi|99081693|ref|YP_613847.1| prolyl-tRNA synthetase [Ruegeria sp. TM1040]
 gi|122984229|sp|Q1GFI1|SYP_SILST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|99037973|gb|ABF64585.1| prolyl-tRNA synthetase [Ruegeria sp. TM1040]
          Length = 451

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/445 (51%), Positives = 322/445 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A++ SH+ MLR GMI Q + GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLPLGYRVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG+EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QMRAGHIPMLMPTIQSADLWRESGRYDAYGEEMLRIRDRHDRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 NVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLTFGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++    +++E++T+ YA T + H+E LF+++PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 NVEQCQAVLEEFTSRYARTDETHDEALFNAVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + ADG+   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTADGQSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE++YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEQLYAALTAIGLEPLYDDRKERAGGKFASMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+MS E+ +   +  ++N+
Sbjct: 421 RRTGESEEMSPEDAVKKIAAIYANH 445


>gi|209885076|ref|YP_002288933.1| prolyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|226701315|sp|B6JH58|SYP_OLICO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|209873272|gb|ACI93068.1| prolyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 441

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 255/442 (57%), Positives = 331/442 (74%), Gaps = 3/442 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLPIL+E P++AEIASH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLTRYFLPILKETPKEAEIASHRLMLRAGMLRQEAAGIYAWLPLGFRVLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFRS
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ SYNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAAARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC+KD +D P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCNKDVLDLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT  YAAT DVH+   ++  +P  KRV+ RGIEVG IFYFGTKYS  M 
Sbjct: 241 SDLT--PIIKQWTELYAATEDVHDAARYETEVPAEKRVNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  V  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVVGPDGVEKPVHSGSYGVGVSRLVGAIIEACHDENGIKWPEAVAPFTVAILNLKQGAS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+Y  L+  G DV +DD  ++ G +FA ADL+G P Q+++G K +++ KVEIK
Sbjct: 359 DTDAACEKLYRALTANGVDVLYDDTDQRPGGKFATADLIGIPWQILIGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R  G RE MS E+ +     +
Sbjct: 419 CRADGSRELMSPEDALARFGAK 440


>gi|294677986|ref|YP_003578601.1| prolyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476806|gb|ADE86194.1| prolyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 446

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/446 (51%), Positives = 311/446 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQIVSHRLMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ M+YGPT+EE++TDIFR+
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGQEMLRIKDRHEREMLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTREDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPMRA SGPIGGD +HEF+VLA TGE++VF      D  +     D+D
Sbjct: 181 YLRTYERMGLTAIPMRAASGPIGGDNTHEFLVLAQTGESEVFYDAQVPDLKLGDRAVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   + +I +++T  YA T + H+E +F+ +PE +R   RGIEVG IFYFGTKYS  M A
Sbjct: 241 DRDQVAAICQEFTTLYARTDETHDEAVFNQIPEARRCVGRGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V+MGS+GIG  R++ A+IE++HD +GIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTPDGTRVPVEMGSHGIGVSRLLGALIEANHDERGIIWPEGVTPFHVGIVNLKQGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  IY  L   G D  +DD  E+ G++FA  DL+G P ++ VG + ++   VE+  
Sbjct: 361 TDAACAGIYKALVAKGLDPLYDDRDERAGAKFATMDLIGLPWRITVGPRGLAGGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E+MS E  ++  +  ++ +R
Sbjct: 421 RRTGESEEMSAEAAVDRIAQIYAAHR 446


>gi|83949530|ref|ZP_00958263.1| prolyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83837429|gb|EAP76725.1| prolyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 452

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/443 (54%), Positives = 321/443 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGYKVLRNIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QQRVGHIPMLMPTLQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLTFGEREIDHD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              +  +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SHEACQAVLEEFTSRYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP++VAPF + ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEAVAPFHVGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA+++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYAQVAALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++S E  I      FS
Sbjct: 421 RRTGESEELSPEAAIAKLKEHFS 443


>gi|163745976|ref|ZP_02153335.1| prolyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380721|gb|EDQ05131.1| prolyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 446

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/440 (53%), Positives = 312/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q S GIYSWLPLG K L  V  I+ +E
Sbjct: 1   MRLSQYFLPVLKENPAEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGYKVLRKVEEIVHQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRVGHIPMLMPTLQSADLWKESGRYDAYGPEMLRIRDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D    +   D  
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLTFGNREIDPS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  ++++++T+ YA T + H+ +LF  +PE ++ +ARGIEVG IFYFGTKYS  M+A
Sbjct: 241 DHDACRAVLDEFTSRYARTDETHDPELFAKVPEERQRTARGIEVGQIFYFGTKYSDAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L  +G D  +DD     G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYKSLKALGLDPLYDDRKGGAGMKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E++  E+ +   + 
Sbjct: 421 RRTGESEELPPEQAVEKLAK 440


>gi|90423927|ref|YP_532297.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|114152242|sp|Q215F8|SYP_RHOPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|90105941|gb|ABD87978.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 439

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 243/440 (55%), Positives = 327/440 (74%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGLRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE  +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIECLMPTLQLADLWRESGRYDAYGPEMLRITDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+NLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVRSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC  D ++ P+P ++ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCDSDVLNLPVPGDDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH+ + F+  +P +K+++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIIKQWTSVYAATEDVHDAERFEREVPADKKLNTRGIEVGQIFYFGTKYSDKMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  V  GSYG+G  R+V A+IE+ HD  GI WP+ VAPF+ +++N+K    
Sbjct: 299 ALVAGPDGVDVPVHGGSYGVGVSRLVGAIIEACHDENGIKWPEEVAPFRAAILNLKQGSA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE +Y  LS  G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEALYKELSAKGVDVLYDDTDQRAGGKFATADLIGIPWQILVGPKGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++  E +   +
Sbjct: 419 RRADGSRENVTPAEAVARLT 438


>gi|84501591|ref|ZP_00999763.1| prolyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
 gi|84390212|gb|EAQ02771.1| prolyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
          Length = 445

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/440 (52%), Positives = 318/440 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+ MLR GMI Q S GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPADAQIVSHRYMLRAGMIKQASAGIYSWLPLGYRVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD+YG EMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYDAYGPEMLRIRDRHDRDMLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E++F+ +PE++R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEEVFNRIPEDRRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQGPDGKQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y   + +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQALYDGFTALGLDPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E++  EE +   + 
Sbjct: 421 RRTGESEELPPEEAVRRVAA 440


>gi|85717006|ref|ZP_01047968.1| prolyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85696130|gb|EAQ34026.1| prolyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 439

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 252/441 (57%), Positives = 331/441 (75%), Gaps = 3/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR 
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAGARRSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D P+P  + D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPVPGTDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   IV+QWT  YAAT DVH+   ++  +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIVKQWTVAYAATEDVHDGPRYEREVPEERRVHTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
               G DG +  +  GSYG+G  R+V A+IE+ HD  GI WPD+VAPF+++++N+K    
Sbjct: 299 TLVTGPDGVEQPIHGGSYGVGVSRLVGAIIEACHDEGGIKWPDAVAPFRVAILNLKQGAG 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE+IY  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDAACERIYRELSAKGIDVLYDDTDQRAGAKFATADLIGIPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R  G RE+++LE+V+   + 
Sbjct: 419 RREDGSRENVALEDVVARLTA 439


>gi|114764030|ref|ZP_01443271.1| prolyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114543622|gb|EAU46636.1| prolyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 445

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/440 (52%), Positives = 311/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  II EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRYMLRAGMIKQASAGIYSWLPLGYKVLRKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG EMLR+ DR+D+ M+Y PT EE++TDIFR+
Sbjct: 61  QARAGHIPMLMPTIQSADLWRESGRYDAYGAEMLRITDRHDRDMLYTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVSSYRDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  +        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITELKFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E +F+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEAVFNQVPEARRRTARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVSDKDGNQVPVHMGSHGIGVSRLLGAIIEASHDDRGIIWPEGVTPFHCGIVNLKTGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KI+A L  +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDKIHAALIALGLDPLYDDTNERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E++  E  +   + 
Sbjct: 421 RRTGESEELPPEAAVAKIAE 440


>gi|84683507|ref|ZP_01011410.1| prolyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84668250|gb|EAQ14717.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 444

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/440 (52%), Positives = 313/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q + GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIASHRLMLRAGMIKQQAAGIYSWLPLGYKVLKNIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFR+
Sbjct: 61  QQRAGHIPILMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFFMKDGYNFDLTREDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            + +  +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEACQAVLEEFTSRYARTDETHDEALFNEIPEERRRVARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + +DG    V+MGS+GIG  R+V A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQDSDGNKVPVEMGSHGIGVSRLVGALIEANHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACETLYKALTAAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+++ E  +     
Sbjct: 421 RRTGESEELAPEAAVAKVRE 440


>gi|260428562|ref|ZP_05782541.1| prolyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260423054|gb|EEX16305.1| prolyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 447

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/440 (53%), Positives = 311/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLP+G K L  +  II EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRYMLRAGMIKQASAGIYSWLPMGFKVLRKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSA+LW ESGRYD+YG EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHIPMLMPTIQSAELWRESGRYDAYGAEMLRITDRHDREMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP T YQIQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVSSYRDLPLTMYQIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +++E++T+ YA T + H+E +F+ +PE +R  ARGIEVG IFYFGTKYS P+ A
Sbjct: 241 SREQCQAVLEEFTSRYARTDETHDEAVFNQVPEERRRVARGIEVGQIFYFGTKYSEPLGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVADADGNQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKTGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEKI+A L  +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEKIHAALIALGLDPLYDDTTERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+M  E  +   + 
Sbjct: 421 RRTGESEEMPPEAAVAKIAE 440


>gi|85704335|ref|ZP_01035438.1| prolyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85671655|gb|EAQ26513.1| prolyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 451

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 243/451 (53%), Positives = 319/451 (70%), Gaps = 2/451 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIASHRLMLRAGMIKQASAGIYSWLPLGFKILRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG EMLR+ DR+D+ M+YGPT+EE++TDIFR+
Sbjct: 61  QVRAGHIPVLMPTLQSADLWRESGRYDDYGAEMLRIKDRHDRDMLYGPTNEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT + + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKDDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +     D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAITDLSLGDRVVDYA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV +WT PYA T + H+  L+D++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SRAECAAIVTEWTTPYARTDETHDAALYDAIPEARRRASRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKSVPVHMGSHGIGVSRLVGAIIEANHDDKGIIWPEGVTPFHAGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IYA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE   
Sbjct: 361 ADAACEAIYASLTALGMEPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVEFTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN--RPVL 449
           R TGI E++  EE +      ++ +  RP L
Sbjct: 421 RRTGISEELPPEEAVAKLVQIYAGHVLRPSL 451


>gi|149201764|ref|ZP_01878738.1| prolyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149144812|gb|EDM32841.1| prolyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 451

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/451 (53%), Positives = 320/451 (70%), Gaps = 2/451 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQASAGIYSWLPLGFKILRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG EMLR+ DR+D+ M+YGPT+EE++TDIFR+
Sbjct: 61  QVRAGHIPVLMPTLQSADLWRESGRYDDYGAEMLRIKDRHDRDMLYGPTNEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +     D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAITDLRLGGRVVDYA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV +WT PYA T + H+  L++++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SRAECEAIVTEWTTPYARTDETHDAALYEAIPEARRRASRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKSVPVHMGSHGIGVSRLIGAIIEANHDDKGIIWPEGVTPFHAGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L  +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYASLVALGMEPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN--RPVL 449
           R TGI E++  E+ +   +  ++ +  RP L
Sbjct: 421 RRTGISEELPPEQAVEKLAQIYAGHVLRPSL 451


>gi|86138530|ref|ZP_01057103.1| prolyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85824590|gb|EAQ44792.1| prolyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 451

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/446 (51%), Positives = 318/446 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSSAGIYSWLPLGFKVLKKLEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD YG+EMLR+ DR+ + M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHMPMLMPTIQSADLWRESGRYDDYGQEMLRVEDRHGRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  ++A
Sbjct: 241 NVEQCQGVLEEFTSKYARTDETHDEALFNQVPEERRRVARGIEVGQIFYFGTKYSDALNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++YA ++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNQLYAAMTALGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E++S E+ +   +  +++++
Sbjct: 421 RRTGESEELSPEDAVKKVAAIYASHQ 446


>gi|319898898|ref|YP_004158991.1| Prolyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319402862|emb|CBI76413.1| Prolyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 442

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 333/439 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEVVSHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ESGRY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAVEILMPTIQSADLWRESGRYNDYGLEMLRIKDRQDRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IP+RA++GPIGG+LSHEFI+LA+TGE+ +FC K F++F +P  + DF 
Sbjct: 181 YLRTFSRIGLKAIPVRADTGPIGGELSHEFIILAETGESSIFCDKRFLEFTVPPISIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  +  N +++ARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDILADIVRQWTSLYAATEEMHNEEEWSKVSTNNKLAARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H + MGSYGIG  R+VAA+IESSHD  GIIWP  + PF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHLISMGSYGIGPSRLVAAIIESSHDEHGIIWPKPITPFDCGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y RL   G D   DD  E+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYMCETLYQRLIHGGFDPLLDDTNERPGSKFATMDLIGLPIQMIIGPKSAAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R T  RE +++E  +N  S
Sbjct: 421 RKTDAREILTVEAALNRFS 439


>gi|83592911|ref|YP_426663.1| prolyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|114152243|sp|Q2RU19|SYP_RHORT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83575825|gb|ABC22376.1| Prolyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
          Length = 435

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 254/438 (57%), Positives = 315/438 (71%), Gaps = 5/438 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ LP L+E P +AEI SH+LMLR GMI QH+ GIY+WLPLG + L  +  ++REE
Sbjct: 1   MRLSRFLLPTLKETPSEAEIVSHRLMLRAGMIRQHASGIYNWLPLGLRVLRKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+ TGA E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M+YGPTHEEV TD+FR 
Sbjct: 61  QDATGAQEILMPTIQSADLWRESGRYDDYGKEMLRIVDRHERDMLYGPTHEEVATDVFRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDLT EG++HSYNKMFV+
Sbjct: 121 NVKSYRALPQNLYQIQWKFRDEVRPRFGVMRGREFLMKDNYSFDLTYEGARHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPM A++GPIGG LSHEFI+LADTGE+ VFC +D +D P P       
Sbjct: 181 YLRTFARLGLKAIPMAADTGPIGGKLSHEFIILADTGESAVFCHRDLLDKPAPENVDYDS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+     +V+ WT+ YAAT ++H       +PE   VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DLQ---PLVDSWTSLYAATDEMHRPDHG--VPEGDLVSARGIEVGHIFHFGTKYSAPMGA 295

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V MGSYGIG  R+VA +IE+SHD  GIIWPD VAPF I +IN+K  D  
Sbjct: 296 TVTAPDGSSQAVFMGSYGIGVSRLVAGIIEASHDDNGIIWPDGVAPFDIGVINLKVGDAA 355

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C  +Y RL   G DV +DD  ++ G++FA  DL+G P QVI G K V+   VE+K 
Sbjct: 356 TDGVCADLYGRLRAAGKDVLFDDTDDRAGAKFATMDLIGLPWQVIAGPKGVAKGMVELKE 415

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R ++S++  +   
Sbjct: 416 RATGERHELSIDSALAKL 433


>gi|126739185|ref|ZP_01754879.1| prolyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126719802|gb|EBA16510.1| prolyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 451

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/445 (53%), Positives = 312/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ +E
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRYMLRAGMIKQSSAGIYSWLPLGFKVLKKIETIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFR 
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGEEMLRINDRHGRDMLYGPTNEELITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF  +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFKEIPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTADGGSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEKIYA LS VG +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEKIYAALSAVGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+MS EE +   +  ++ +
Sbjct: 421 RRTGESEEMSPEEAVKKVAEIYAKH 445


>gi|119384044|ref|YP_915100.1| prolyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|152112938|sp|A1B1L0|SYP_PARDP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119373811|gb|ABL69404.1| prolyl-tRNA synthetase [Paracoccus denitrificans PD1222]
          Length = 450

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/440 (52%), Positives = 316/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P+L+E+P++A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFMPVLKEDPKEAQIVSHRLMLRAGMIKQQAAGIYSWLPLGYKVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QARAGHIAMLMPTLQSADLWRESGRYDDYGEEMLRIKDRHKRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYHVQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGDRRIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+    +++E++T+ YA T + H+  LF+ +P+ +R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 DVAQCRAVLEEFTSRYARTDETHDAALFEQIPKERRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVGPDGSRVPVHMGSHGIGVSRLLGAIIEASHDDRGIIWPEGVTPFHVGIVNLKQGDAS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L   G D  +DD  E+ G++FA  DL+G P ++ VG + ++ +KVE+  
Sbjct: 361 TDGACEALYAELKAQGLDALYDDRDERAGAKFATMDLVGLPWRITVGPRGLAANKVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG   +MS +E +     
Sbjct: 421 RRTGESVEMSPQEAVVRLRE 440


>gi|92117720|ref|YP_577449.1| prolyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|123083656|sp|Q1QLA8|SYP_NITHX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91800614|gb|ABE62989.1| prolyl-tRNA synthetase [Nitrobacter hamburgensis X14]
          Length = 439

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 248/439 (56%), Positives = 330/439 (75%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFRS
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYN+MFV+
Sbjct: 121 YVRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEVGARLSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D P+P  + D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPVPGTDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   IV+QWT  YAAT DVH+   ++  +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIVKQWTTAYAATEDVHDGARYEREVPEERRVHTRGIEVGQIFYFGTKYSESMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVAGPDGVEQPIHGGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFTVAILNLKQGAG 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDAACERLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE+++LE+ +   
Sbjct: 419 RRGDGTRENVALEDAVERL 437


>gi|259416086|ref|ZP_05740006.1| prolyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259347525|gb|EEW59302.1| prolyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 451

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/445 (51%), Positives = 321/445 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A++ SH+ MLR GMI Q + GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLPLGYRVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG+EMLR+ DR+D+ M++ PT EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTIQSADLWRESGRYDAYGEEMLRIRDRHDRDMLFTPTAEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 NVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLSFGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF+++PE++R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEALFNAVPEDRRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + A+G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTAEGDSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE++YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEQLYAALTAIGLEPLYDDRKERAGGKFASMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G  E+MS E+ +   +  ++N+
Sbjct: 421 RRSGESEEMSPEDAVKKIAAIYANH 445


>gi|182678768|ref|YP_001832914.1| prolyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|226699120|sp|B2IDI9|SYP_BEII9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182634651|gb|ACB95425.1| prolyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 439

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/440 (58%), Positives = 335/440 (76%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q + GIY+WLPLG + L  V  I+REE
Sbjct: 1   MRLSRYFLPILRENPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGFRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PTLQ ADLW E+GRYD+YG EMLR+ DR+++ ++YGPT+E+++T+IFR+
Sbjct: 61  MDRAGAIELLMPTLQLADLWRETGRYDAYGPEMLRIKDRHERELLYGPTNEDMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  EG++ SYNKMFV+
Sbjct: 121 YVRSYRDLPKILYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEEGARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRI+ R+GL +IPMRAE+GPIGGDLSHEFI+LADTGE+ VFC+KD +D PIP E+TD+D
Sbjct: 181 YLRIYKRMGLTAIPMRAETGPIGGDLSHEFIILADTGESAVFCNKDVLDLPIPDEHTDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             +S   I++QWT+ YAAT DVH+   F+S  P  KR+  RGIEVG +FYFG KYS PM 
Sbjct: 241 GDLS--PIIKQWTSLYAATEDVHDAARFESETPPEKRIERRGIEVGQVFYFGEKYSKPMR 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +   G DG +   Q GSYG+G  R+V A+IE+SHD  GIIWP++VAPF + L N+K  D 
Sbjct: 299 SLITGPDGSEKPFQGGSYGVGVSRLVGAIIEASHDEAGIIWPEAVAPFTVGLANLKVGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC +IY RL  +G DV +DD  ++ G +FA  DL+G P Q+IVG K +++ K+E+K
Sbjct: 359 ATDAACAEIYERLEALGVDVLYDDTDDRPGGKFAKLDLIGLPYQIIVGPKGLAEGKIEMK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R TG RE++S+  VI   +
Sbjct: 419 TRATGARENLSIAAVIERFT 438


>gi|299135009|ref|ZP_07028200.1| prolyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298589986|gb|EFI50190.1| prolyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 445

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 248/442 (56%), Positives = 331/442 (74%), Gaps = 3/442 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLTRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGFRVLKKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QDRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR+LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYNKMFV+
Sbjct: 121 YVKSYRSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC+KD +D P+P  + ++D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCNKDVLDLPVPGADVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT  YAAT DVH+   ++  +P +KRV+ RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIIKQWTELYAATEDVHDTARYEKEVPADKRVNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G+DG +  +  GSYGIG  R+V A+IE+ HD  GI WP+ VAPF+++++N+K    
Sbjct: 299 ALVVGSDGAEKPIHGGSYGIGVSRLVGAIIEACHDENGIQWPEEVAPFRVAILNLKQGAA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+Y  LS  G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVEIK
Sbjct: 359 DTDTACEKLYKELSAAGVDVLYDDTDQRPGGKFATADLIGIPWQILVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R  G RE MS++E   +   +
Sbjct: 419 KRADGSREMMSVDEASRHFQTK 440


>gi|254294083|ref|YP_003060106.1| prolyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254042614|gb|ACT59409.1| prolyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 441

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/441 (53%), Positives = 326/441 (73%), Gaps = 3/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+FLP+L+E P +A+I SH+LMLR GM+ Q   GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSKFFLPVLKETPAEAKIISHQLMLRAGMVKQTGSGIYTWLPLGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+D+ M++GPT+EEV+TDIFRS
Sbjct: 61  QNRAGAIELLMPTIQPADLWKESGRYDAYGKEMLRITDRHDREMLFGPTNEEVITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+    ++ SY KMF +
Sbjct: 121 YVKSYKQLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDVNEVEARKSYYKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFI+LA+TGE++VFC  + ++ P P  + DF 
Sbjct: 181 YLNTFSRMGLKAVPMRADTGPIGGDLSHEFIILAETGESEVFCDAELVNMPPPGLDLDF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L    E+ T  YAAT ++H++  F+S  PE +RVSARGIEVGHIF FGTKYS PM 
Sbjct: 240 -DSDLLGEFEKRTQYYAATEEMHDQTKFESEVPEERRVSARGIEVGHIFNFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A     +GK+  V MGSYG+G  R++ A+IE+ HD KG+IWP+ VAPFK +++N++  D+
Sbjct: 299 AKVMTPEGKEAPVHMGSYGVGVSRLLGAIIEACHDDKGVIWPEEVAPFKSAVVNLRQGDE 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C  ACE +YA+L   G D  +DD  ++ G++ +  +L+G P  +++G + + +  VE+K
Sbjct: 359 ACDKACEDVYAKLRATGLDPMYDDRDDRPGAKLSTLELIGIPKAIVIGPRGLKNGVVEVK 418

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R++G+ E+MSL+  +N  + 
Sbjct: 419 DRISGVTEEMSLDAALNKLTA 439


>gi|319407251|emb|CBI80890.1| Prolyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 441

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 262/439 (59%), Positives = 341/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E+P++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKESPKEAEVISHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEILMPTIQSADLWRESERYNDYGLEMLRIRDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+LA TGE+ +FC K F++F +PS + DF 
Sbjct: 181 YLRTFSRIGLKAIPMRADTGPIGGELSHEFIILAKTGESSIFCDKRFLEFTVPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  +P++ ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADIVRQWTSLYAATEEMHNEEEWSKVPDSNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H+V MGSYGIG  R+VAAVIESSHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHFVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD GE+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYICETLYQELIRRGFDPLLDDTGERPGSKFATMDLIGLPVQMIIGPKNATQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+RE +++E V+N  S
Sbjct: 421 RKTGLREVLTVEAVLNRFS 439


>gi|241761006|ref|ZP_04759095.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260753028|ref|YP_003225921.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|241374625|gb|EER64086.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552391|gb|ACV75337.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 443

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/440 (53%), Positives = 314/440 (71%), Gaps = 2/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTAAGIYAWLPLGLRVLRRIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ+ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++T + R 
Sbjct: 61  QARAGALELLMPTLQTADLWRESGRYDAYGPEMLRIKDRHNRELLYGPTNEEMITALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP  FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV+
Sbjct: 121 NLQSYRDLPRIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE+ VF      + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGESDVFYHS-NWEQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT +  +    ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAATDEKRDPLR-EAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      VE+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVVELKN 418

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +G ++ +S+E+  N  + 
Sbjct: 419 RASGEKQTISVEDAFNLLTA 438


>gi|75676056|ref|YP_318477.1| prolyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|114152223|sp|Q3SRG6|SYP_NITWN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|74420926|gb|ABA05125.1| Prolyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 439

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/439 (57%), Positives = 328/439 (74%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR 
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYN+MFV+
Sbjct: 121 YIRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAGARRSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D PIP    D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPIPGTEVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   IV QWT  YAAT DVH+   ++  +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 GDLT--PIVRQWTTAYAATEDVHDGPRYEREVPEERRVHTRGIEVGQIFYFGTKYSESMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVTGTDGVEQPIHGGSYGVGVSRLVGAIIEACHDEAGIKWPEAVAPFTVAILNLKQGAS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +ACE+IY  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDEACERIYRELSARGVDVLYDDTDQRAGAKFATADLIGSPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE+++LE+ +   
Sbjct: 419 RRGDGSRENVALEDAVARL 437


>gi|283856263|ref|YP_162195.2| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495061|sp|P75000|SYP_ZYMMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|283775258|gb|AAV89084.2| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 443

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/440 (53%), Positives = 312/440 (70%), Gaps = 2/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTAAGIYAWLPLGLRVLRRIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ+ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++T + R 
Sbjct: 61  QARAGALELLMPTLQTADLWRESGRYDAYGPEMLRIKDRHNRELLYGPTNEEMITALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP  FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV+
Sbjct: 121 NLQSYRDLPRIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE+ VF      + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGESDVFYHS-NWEQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT +  +    ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAATDEKRDPLR-EAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      VE+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVVELKN 418

Query: 421 RLTGIREDMSLEEVINYASH 440
           R  G ++ +S+E   N  + 
Sbjct: 419 RANGEKQTISVENAFNLLTA 438


>gi|144899844|emb|CAM76708.1| prolyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 429

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 227/440 (51%), Positives = 305/440 (69%), Gaps = 11/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP L+E P +A+IASH+LMLR GMI Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPTLKETPSEAQIASHRLMLRAGMIRQSASGIYTWLPLGWKVLQKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSAD+W ESGRYD+YGKEMLR+ DR+D+ M++GPT+EE++T IFR 
Sbjct: 61  QDAAGAQELLMPTIQSADIWRESGRYDAYGKEMLRIVDRHDREMLFGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKD+YSFD+  +G+K SY  MF +
Sbjct: 121 NVKSYRELPKILYHIQWKFRDEVRPRFGVMRGREFLMKDSYSFDIDFDGAKRSYEAMFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM A+SG IGG+L+HEF VLA+TGE+ VF    + +           
Sbjct: 181 YLRTFKRMGLTAIPMVADSGAIGGNLTHEFHVLAETGESGVFYDVAYEELAAKD------ 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E  +  YA T + H+    +  P ++   ARGIEVGHIFYFGTKYS  M A
Sbjct: 235 -----AVDLEALSKLYAVTDEKHDPNSPECPPADRLKVARGIEVGHIFYFGTKYSKAMGA 289

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   +V+MGSYGIG  R+V A+IE+ HD +GI WP++VAPFK+ LIN+KA D  
Sbjct: 290 VVAGPDGNPVHVEMGSYGIGVSRLVGAIIEAYHDDRGIKWPEAVAPFKVGLINLKAGDGA 349

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  LS+ G +V +DD  ++ G +FA  DL+G P Q++ G K V+   VE+K+
Sbjct: 350 CDRVCEDMYRALSEQGVEVLYDDRDDRAGVKFADMDLIGLPWQLVAGPKGVAAGLVELKN 409

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG ++++S+E  +   + 
Sbjct: 410 RHTGEKQELSVEAALAQLTA 429


>gi|126463194|ref|YP_001044308.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640237|ref|YP_002526499.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|166980147|sp|A3PMH0|SYP_RHOS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782913|sp|B9KLX3|SYP_RHOSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126104858|gb|ABN77536.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|221161018|gb|ACM01998.1| Prolyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 445

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/440 (54%), Positives = 311/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAVFGQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVVTADGSRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + +S  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGISAGKVELTN 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+MS    ++  + 
Sbjct: 421 RRTGESEEMSSGAAVDRLAQ 440


>gi|77464352|ref|YP_353856.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|114152244|sp|Q3IZS9|SYP_RHOS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77388770|gb|ABA79955.1| Prolyl-tRNA synthetase, class IIa [Rhodobacter sphaeroides 2.4.1]
          Length = 445

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/440 (54%), Positives = 310/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAVFGQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVVTADGSRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + +S  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGISAGKVELTN 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+MS    ++  + 
Sbjct: 421 RRTGESEEMSSGAAVDRLAQ 440


>gi|146276453|ref|YP_001166612.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|166980148|sp|A4WPJ3|SYP_RHOS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145554694|gb|ABP69307.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 445

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/440 (53%), Positives = 313/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG KAL  V  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRFMLRAGMIKQQAAGIYSWLPLGFKALKRVEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDL  + + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYHVQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDFDSAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV++WT PYA T + H+E +F+++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SREECEAIVKEWTTPYARTDETHDEAIFNAIPEERRRTSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTADGARVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + ++  KVE+ +
Sbjct: 361 TDLACEALYRDLSAKGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGIAAGKVELTN 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+MS    ++  + 
Sbjct: 421 RRTGESEEMSSGAAVDRLAQ 440


>gi|302383072|ref|YP_003818895.1| prolyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193700|gb|ADL01272.1| prolyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 437

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 240/439 (54%), Positives = 322/439 (73%), Gaps = 4/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRLSRYFLPTLKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLNRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR 
Sbjct: 61  QERAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 FVKSYKALPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDIDEASARRAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFIVLADTGE+QVFC K  ++ P P  + D++
Sbjct: 181 YLNTFARMGLKAVPMRADTGPIGGDLSHEFIVLADTGESQVFCDKQLVEMPAPGADVDWN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
           D+ +   IV+  T+ YAAT ++H+   F+S   +  R++ARGIEVGHIFYFGTKYS PM 
Sbjct: 241 DLQA---IVDGRTSLYAATEEMHDAAQFESQTADGDRLTARGIEVGHIFYFGTKYSAPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG+D  V MGSYG+G  R++ A+IE+SHD  GIIWPD+VAPF + +IN++A+D 
Sbjct: 298 AKVAGPDGQDTEVHMGSYGVGVSRLLGAIIEASHDDAGIIWPDAVAPFDVVVINLRANDP 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +ACE     L   G  V +DD  E+ G +FA ADL+G P Q+ +G K V++  VE+K
Sbjct: 358 GVCEACEAAVEALEAAGKSVLYDDTDERPGGKFATADLIGIPWQLTIGPKGVAEGVVELK 417

Query: 420 HRLTGIREDMSLEEVINYA 438
            R +G +  + L++ +   
Sbjct: 418 RRASGEKSTLPLDQAMERI 436


>gi|146341083|ref|YP_001206131.1| prolyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|166980103|sp|A4YVI0|SYP_BRASO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146193889|emb|CAL77906.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Bradyrhizobium sp. ORS278]
          Length = 444

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 247/439 (56%), Positives = 326/439 (74%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGFKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGALELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL   G++ +YNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C ++ +D PIPS + D+D
Sbjct: 181 YLRTFARMGLKGIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRNVLDLPIPSASVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I+++WT+ YAAT DVH+   F++  P  +RV  RGIEVG IFYFGTKYS PM 
Sbjct: 241 GDLT--PIIKEWTSLYAATEDVHDGARFEAEVPAERRVHTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+  A+IE+ HD  GI WP+ VAPF+  ++N+K    
Sbjct: 299 ALVAGPDGAEVTIHGGSYGVGVSRLAGAIIEACHDDAGIKWPEEVAPFRAVILNLKQGGS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEQLYRDLLAKGVDVLYDDTEQRAGGKFATADLIGIPWQIMVGPKSLAEGKVEVK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE MS  +++   
Sbjct: 419 TRSDGAREMMSPADIVARL 437


>gi|319404243|emb|CBI77836.1| Prolyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 441

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 260/439 (59%), Positives = 339/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E+P++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKESPKEAEVISHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEILMPTIQSADLWRESERYNDYGLEMLRIRDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+LA TGE+ +FC K F++F +PS + DF 
Sbjct: 181 YLRTFSRVGLKAIPMRADTGPIGGELSHEFIILAKTGESSIFCDKRFLEFTVPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  + ++ ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADIVRQWTSLYAATEEMHNEEEWSKVSDSNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H+V MGSYGIG  R+VAAVIESSHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHFVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYICETLYQGLIRSGFDPLLDDTSERPGSKFATMDLIGLPVQMIIGPKNATQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+RE +++E V+N  S
Sbjct: 421 RKTGLREVLTVEAVLNRFS 439


>gi|40063567|gb|AAR38356.1| prolyl-tRNA synthetase [uncultured marine bacterium 582]
          Length = 445

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/438 (51%), Positives = 308/438 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P+L+ENP DA+I SH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFMPVLKENPVDAQIVSHRLMLRAGMIKQSSAGIYSWLPMGFKVLKKIEDIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD++G EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHMPMLMPTIQSADLWRESGRYDAFGDEMLRIKDRHDRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SG +GGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGAMGGDNTHEFLVLAETGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  ++A
Sbjct: 241 SVAQCQGVLEEFTTKYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSEALNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T     G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D+ 
Sbjct: 301 TVDDGQGGKTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDEA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y+ L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDGLYSALTNAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ E+M+ E  +   
Sbjct: 421 RRSGVSEEMTPEAAVAKV 438


>gi|332559243|ref|ZP_08413565.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
 gi|332276955|gb|EGJ22270.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
          Length = 445

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/440 (53%), Positives = 310/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAIFAQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   A G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVVTAGGNRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + ++  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGIAAGKVELTN 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+MS    ++  + 
Sbjct: 421 RRTGESEEMSSGAAVDRLAQ 440


>gi|254474756|ref|ZP_05088142.1| prolyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214028999|gb|EEB69834.1| prolyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 450

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/446 (51%), Positives = 312/446 (69%), Gaps = 1/446 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M + T+Q ADLW ESGRYD YG+EMLR+ DR+D+ M++GPT+EE++TDIFR+
Sbjct: 61  QMRAGHIPMLMSTMQPADLWRESGRYDDYGQEMLRIKDRHDRDMLFGPTNEEMITDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQ+Q KFRDE+RPRFGVMR REF MKD Y+FDL+ E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTMYQVQWKFRDEIRPRFGVMRGREFYMKDGYNFDLSKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE++R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEIPEDRRRVARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG+   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D+ 
Sbjct: 301 KVQTPDGE-VPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDEA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L   G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 360 ADGACEDLYKALVAAGLDPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 419

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E+++ E  +      ++N+R
Sbjct: 420 RRTGESEELAPEAAVAKIIEIYANHR 445


>gi|217976887|ref|YP_002361034.1| prolyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|254782909|sp|B8EP84|SYP_METSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217502263|gb|ACK49672.1| prolyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 440

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 247/439 (56%), Positives = 321/439 (73%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG + L  V  I+R+E
Sbjct: 1   MRLSRYFLPILRENPKEAEIVSHRLMLRAGMIRQEAAGIYSWLPLGLRVLQKVAEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PTLQ ADLW E+GRY++YG EMLR+ DR+++ M+YGPT+E+++T IFRS
Sbjct: 61  MNRAGAIELLMPTLQLADLWRETGRYEAYGPEMLRIKDRHEREMLYGPTNEDMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFVS
Sbjct: 121 YVRSYRELPKILYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARLAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF R+GL+ IPMRAE+GPIGGD SHEFI+LA+TGE+ V+C    ++ PIP E  D+D
Sbjct: 181 YLRIFARMGLRVIPMRAETGPIGGDQSHEFIILAETGESAVYCDAGVLNLPIPDETIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS-ARGIEVGHIFYFGTKYSLPMS 299
             +S   IV+QWT+ YAAT DVH+ + F       +    RGIEVG +F+FG KYS PM+
Sbjct: 241 GDLS--PIVKQWTSLYAATEDVHDAERFALETTEGQRIETRGIEVGQVFFFGDKYSKPMN 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +   Q GSYG+G  R+V A+IE++HD  GIIWP SVAPFK+ + N+K  D 
Sbjct: 299 ANIAGPDGVERPFQGGSYGVGVSRLVGALIEANHDEAGIIWPASVAPFKVGIANLKVGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+ A L K G DV +DD  ++ G++FA  DL+G P Q IVG K +++ K+EIK
Sbjct: 359 ATDAACEKLLAALEKAGVDVLYDDSADRPGAKFAKLDLIGLPYQAIVGPKGLAEGKIEIK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R +G R ++SL+E I   
Sbjct: 419 TRASGERVELSLDEAIERL 437


>gi|148255883|ref|YP_001240468.1| prolyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|166980102|sp|A5EK68|SYP_BRASB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146408056|gb|ABQ36562.1| Prolyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
          Length = 444

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 249/439 (56%), Positives = 326/439 (74%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGFKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++TDIFR+
Sbjct: 61  QNRAGALELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL   G++ +YNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D +D PIP  + D+D
Sbjct: 181 YLRTFARMGLKGIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLDLPIPPASVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMS 299
             ++   I++QWT+ YAAT DVH+   F++  PE +R+  RGIEVG IFYFGTKYS PM 
Sbjct: 241 GDLT--PIIKQWTSLYAATEDVHDGARFEAEVPEERRLHTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+  A+IE+ HD  GI WP+ VAPF+  ++N+K    
Sbjct: 299 ALVAGPDGAEVTIHGGSYGVGVSRLAGAIIEACHDDAGIKWPEEVAPFRAVILNLKQGGS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEQLYRDLLAKGVDVLYDDTEQRAGGKFATADLIGIPWQIMVGPKSLAEGKVEVK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G R+ MS  +V+   
Sbjct: 419 TRSDGARQMMSPADVVARL 437


>gi|89053551|ref|YP_509002.1| prolyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|114152201|sp|Q28TI5|SYP_JANSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88863100|gb|ABD53977.1| prolyl-tRNA synthetase [Jannaschia sp. CCS1]
          Length = 452

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/448 (49%), Positives = 315/448 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRLMLRAGMIKQASAGIYSWLPLGYKVLKRIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW +SGR+D+YG EMLRL DR+D+ M+YGPT+EE++TD+  +
Sbjct: 61  QIRAGHIPMLMPTLQSADLWQKSGRFDAYGPEMLRLKDRHDRDMLYGPTNEEMITDMVGT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 FVTSYKSLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLADTGESEVFYDAEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+   +++++++T+ YA T + H+E  F ++P +++ SARGIEVG IFYFGT+YS  + A
Sbjct: 241 DVAQCDAVLQEFTSRYARTDETHDEAEFAAIPGDRQRSARGIEVGQIFYFGTEYSEKLGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  +G+   + MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 HVQNDEGERVPLHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +   L   G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALETALENAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R TG  E+++ +  +   +  ++ ++PV
Sbjct: 421 RRTGESEELTPDAAVARVAEVYAAHKPV 448


>gi|163733470|ref|ZP_02140913.1| prolyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161393258|gb|EDQ17584.1| prolyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 451

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/445 (51%), Positives = 313/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YF+P+L+ENP +A+I SH+LMLR GMI Q++ GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFMPVLRENPAEAQIVSHRLMLRAGMIKQNAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QIRAGHVPMLMPTMQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFFMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H++ LFD++P  ++  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVAQCQGVMEEFTNLYARTDETHDQALFDAIPAERQRKARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKPTAVHMGSHGIGVSRLVGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYTSLRALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G   +M  E+ +   +  ++ +
Sbjct: 421 RKSGESVEMPPEQAVEKIASIYATH 445


>gi|148555262|ref|YP_001262844.1| prolyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|166980160|sp|A5V8U0|SYP_SPHWW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148500452|gb|ABQ68706.1| prolyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 437

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/439 (54%), Positives = 320/439 (72%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP+++E+P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRHFLPVMKESPADAQIVSHKLMLRAGMIRQTAAGIYAWLPLGHRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+QSADLW ESGRYD+YG EMLR+ DR+D+ M++GPT+EE++T IFR 
Sbjct: 61  QDRAGAIELLMPTMQSADLWRESGRYDAYGPEMLRIKDRHDREMLFGPTNEEMITAIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + +SYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  EG++HSYN+MFV+
Sbjct: 121 NARSYRDLPRILYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDIEGARHSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM+A++GPIGGDLSHEFIVLA TGE++VF           + + D D
Sbjct: 181 YLRTFRRMGLSAIPMQADTGPIGGDLSHEFIVLAPTGESEVFY--HTNWEVERALDVDVD 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L   V+  TA YAAT +  +     +  ++ + S RGIEVGHIFYFGTKYS  M  
Sbjct: 239 DVAALQGFVDGLTADYAATDEKRDPAREAAAGDSLKQS-RGIEVGHIFYFGTKYSAAMGM 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+    QMGSYGIG  R++ A+IE+SHD  GI+WPD+VAP+ + LIN++A D  
Sbjct: 298 TVQGPDGQPVTPQMGSYGIGVSRLMGAIIEASHDDAGIVWPDAVAPYTVGLINMRADDAR 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A + +YA+L   G +  +DD  E+ G++FA  DL+G P Q++VG K +    VE+K 
Sbjct: 358 CAAAADDLYAKLEAAGIETLYDDRDERGGAKFATMDLIGLPWQIVVGPKGLDKGVVELKR 417

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG + ++S+E+ I   +
Sbjct: 418 RATGEKVELSVEDAIARIA 436


>gi|254463517|ref|ZP_05076933.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206680106|gb|EDZ44593.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 445

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 231/440 (52%), Positives = 309/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP DA+I SH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKENPADAQIVSHRLMLRAGMIKQSSAGIYSWLPMGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW +SGRYD+YG EMLR+ DR+D+ M+YGPT+EE++TD+  +
Sbjct: 61  QQRAGHIPMLMPTLQSADLWRKSGRYDAYGPEMLRIKDRHDREMLYGPTNEELITDMVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 FVGSYKSLPLTLYHVQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF   +  D        DFD
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLADTGESEVFYDSEITDLSFGDRTIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  S++E++T+ YA T + H E  F+ LPE +R  ARGIEVG IFYFGT+YS  M A
Sbjct: 241 DKAACQSVMEEFTSRYARTDETHEEAAFNELPEERRRVARGIEVGQIFYFGTEYSEKMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG+   + MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N+K  D  
Sbjct: 301 MVQNEDGQRVPLHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L+ +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYDSLTALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+M+ E  I   + 
Sbjct: 421 RRTGESEEMTPELAIAKIAA 440


>gi|319405682|emb|CBI79305.1| Prolyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 441

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 259/439 (58%), Positives = 335/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AE+ SH+ MLR GMI Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEVVSHRFMLRAGMIRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERIGALEILMPTIQSADLWRESNRYNDYGLEMLRIKDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+L++TGE+ +FC K F++F IPS + DF 
Sbjct: 181 YLRTFSRIGLKAIPMRADTGPIGGELSHEFIILSETGESSIFCDKRFLEFTIPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  +V QWT+ YAAT ++HNE+ ++ +    ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADVVRQWTSLYAATEEMHNEEEWNKVSAMNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+  V MGSYGIG  R+VAAVIESSHD  GIIWP SVAPF   +IN+K  DQ 
Sbjct: 301 KIMGQDGKERLVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSVAPFDFGIINMKPDDQK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ GS+FA  DL+G P+Q+I+  K V+ ++VEIK 
Sbjct: 361 CSYICETLYQGLIRNGFDPLLDDTSERPGSKFATMDLIGLPVQMIISPKNVTQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE +++E  ++  +
Sbjct: 421 RKTGFREVLTVEAALHRFA 439


>gi|114769540|ref|ZP_01447166.1| prolyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114550457|gb|EAU53338.1| prolyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 446

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 231/444 (52%), Positives = 318/444 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+ENP DA+IASH+LMLR GMI Q   GIYSWLP+G K L  +  I+ +E
Sbjct: 1   MRLSKYFLPILKENPSDAQIASHRLMLRAGMIRQAQSGIYSWLPMGYKVLRKLENIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G   M +PT+QSADLW ESGRYD YGKEMLR+ DR+ + M++GPT+EE++TDIFR+
Sbjct: 61  QIRAGHNPMLMPTIQSADLWRESGRYDDYGKEMLRITDRHGRDMLFGPTNEELITDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + HSYN+  VS
Sbjct: 121 SVKSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLNKEAAMHSYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+G+K+IPMRA+SGPIGG+ +HEF+VLADTGE++VF  ++ +D  +  +  D++
Sbjct: 181 YLRTYERMGMKAIPMRADSGPIGGEDTHEFLVLADTGESEVFFDRNILDLSLGDKEIDYN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +     SI ++WT PYA T + HN +LF  +P+ +++++RGIEVG IFYFGTKYS  M+A
Sbjct: 241 NWDECASIFKEWTTPYARTDETHNPELFAKIPDERQMTSRGIEVGQIFYFGTKYSESMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                +  +  V MGS+GIG  R+V A+IE+SHD  GIIWP++V+PF + ++N+K  D  
Sbjct: 301 KVSTPNDGEIPVHMGSHGIGVSRMVGAIIEASHDENGIIWPEAVSPFGVGIVNLKQGDDQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y   S +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADLACENLYKSASLLGIDPLYDDRSERAGAKFASMDLIGLPWRITVGPRGLKNGVVELTC 420

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG+ E++  E  +   +  +S 
Sbjct: 421 RRTGVSEELPPELAMEKLAKVYSK 444


>gi|126735142|ref|ZP_01750888.1| prolyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126715697|gb|EBA12562.1| prolyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 446

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/440 (51%), Positives = 312/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E PR+A+I SH+ ML+ GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPREAQIVSHRYMLQAGMIKQASAGIYSWLPLGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PT+QSADLW ESGRYD+YG+EMLR+ DR  + M++ PT EE++TDIFR+
Sbjct: 61  QARAGHIAIQMPTIQSADLWRESGRYDAYGEEMLRIKDRGGRDMLFTPTAEELVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYQIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLKFGDRQIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  +++E++T+ YA T + H+E LFD++PE ++ +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DKAACQAVLEEFTSRYARTDETHDEALFDAIPEERKRTARGIEVGQIFYFGTKYSESMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+++ D  
Sbjct: 301 LVDDGQGGKVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGILNMRSGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L+ +G +  +DD  E+ G++F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYASLTALGLEPLYDDRDERAGAKFGTMDMIGLPWRITVGPRGLKNGVVEVTC 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+M  E+ +   + 
Sbjct: 421 RRTGESEEMPPEDAVAKIAK 440


>gi|86281359|gb|ABC90422.1| prolyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 410

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 267/408 (65%), Positives = 333/408 (81%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI Q S+GIYSWLPLG++ LD VNAIIREEQNR GAIE+S+PTLQSA+LW ESGRYD+YG
Sbjct: 1   MIRQQSQGIYSWLPLGKRVLDKVNAIIREEQNRAGAIELSMPTLQSAELWQESGRYDAYG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEMLR+ DR D+ M+YGPT+EE++TDIFRS +KSY++LP   Y IQLKFRDE+RPRFG M
Sbjct: 61  KEMLRIKDRQDRPMLYGPTNEEMVTDIFRSSVKSYKDLPLNLYHIQLKFRDEIRPRFGTM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           RSREF+MKDAYSFDLT EG++HSYNKMF +YLR F RLGL++IPMRA++GPIGG+LSHEF
Sbjct: 121 RSREFMMKDAYSFDLTREGAEHSYNKMFAAYLRTFERLGLRAIPMRADTGPIGGNLSHEF 180

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+LADTGE++VFC KDF+ F IP ENTDFD +  L +I ++WT+ YAATS++H+E  F++
Sbjct: 181 IILADTGESEVFCHKDFVGFDIPGENTDFDSVEGLKAIFDKWTSLYAATSEMHDEAAFNA 240

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +PE  R+SARGIEVGHIFYFGTKYS PM A  +G DGK+H+V MGSYGIG  R+V A+IE
Sbjct: 241 VPEGDRLSARGIEVGHIFYFGTKYSEPMGAKVQGPDGKEHFVHMGSYGIGPTRLVPAIIE 300

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD  GIIWP SVAPF + +IN+K  DQ C D CE IYA L K G DV +DD  ++ G+
Sbjct: 301 ASHDDNGIIWPASVAPFDVVVINMKVGDQACDDTCELIYAALKKAGKDVLYDDTDDRAGT 360

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +FA ADL+G P+Q+I G + V++ +VE+K R TG RE M++E  IN  
Sbjct: 361 KFATADLIGVPVQIIAGPRAVANGEVEVKDRKTGARETMTIEAAINRF 408


>gi|84515335|ref|ZP_01002697.1| prolyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84510618|gb|EAQ07073.1| prolyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 446

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/430 (51%), Positives = 302/430 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E PR+A+I SH+ ML+ GMI Q S GIYSWLPLG K L  +  I+ +E
Sbjct: 1   MRLSRYFLPVLKETPREAQIVSHRYMLQAGMIKQASAGIYSWLPLGFKVLRKIENIVHQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PT+QSADLW ESGRYD+YG+EMLR+ DR  + M++ PT EE++TDIFR+
Sbjct: 61  QERAGHIAIQMPTIQSADLWRESGRYDAYGEEMLRIKDRGGREMLFTPTAEELVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVTSYKDLPLTLYQIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D        D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSQITDLKFGDRQIDYS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  ++++++T+ YA T + H+  LF+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DHAACAAVLDEFTSRYARTDETHDAALFNQVPEERRRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 LVDDGKGGKVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L+ +G +  +DD  E+ G++F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQALYDSLTALGLEPLYDDRDERAGTKFGTMDMIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMS 430
           R TG  E++ 
Sbjct: 421 RRTGESEELP 430


>gi|258542706|ref|YP_003188139.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633784|dbj|BAH99759.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636843|dbj|BAI02812.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639896|dbj|BAI05858.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642952|dbj|BAI08907.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646007|dbj|BAI11955.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649060|dbj|BAI15001.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652047|dbj|BAI17981.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655104|dbj|BAI21031.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 438

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/438 (50%), Positives = 309/438 (70%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q + GIY+WLP G K L N++ I+REE
Sbjct: 1   MRLSRSFLPTLKENPAEAQIVSHRLMLRAGLIRQTASGIYAWLPAGLKVLRNISQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PTLQSADLW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TD+F  
Sbjct: 61  QDRVGAQEVLMPTLQSADLWKRSGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  +Y +M ++
Sbjct: 121 TVKSYKDLPQVLYHIQWKFRDEMRPRFGVMRGREFLMKDAYSFDLDYESAVATYRRMLLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG++++PMRA++GPIGG+LSHEF++LA TGE+ VF      +     E  D +
Sbjct: 181 YLRTFQRLGVRAVPMRADTGPIGGELSHEFLILAPTGESGVFYDAALEEQDWLDEPVDTN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             ++L +   + T PYAAT ++H+E  + ++P  ++   RG+EVGHIFYFG KY+  M  
Sbjct: 241 SPVALEAFFNRVTTPYAATDEMHDEAGWQAVPAERQREGRGVEVGHIFYFGDKYTRSMDV 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G DG   Y +MGSYGIG  R+  A+IE+ HD  GIIWPD+VAPF+  ++N+K  D++
Sbjct: 301 SVSGPDGNQLYPEMGSYGIGVSRLAGAIIEACHDDNGIIWPDAVAPFRAVILNLKNGDEL 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE+IY+   +      +DD  E+ G +FA ADL+G P Q++VG +   + KVE+K 
Sbjct: 361 CDAICERIYSTNEEA---FLYDDRAERAGVKFADADLMGHPWQIVVGPRGAKEGKVELKR 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R ++S+++ +   
Sbjct: 418 RATGERHEVSVDDALALV 435


>gi|329114694|ref|ZP_08243453.1| Prolyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696174|gb|EGE47856.1| Prolyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 459

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 221/438 (50%), Positives = 309/438 (70%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q + GIY+WLP G K L N++ I+REE
Sbjct: 22  MRLSRSFLPTLKENPAEAQIVSHRLMLRAGLIRQTASGIYAWLPAGLKVLRNISQIVREE 81

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PTLQSADLW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TD+F  
Sbjct: 82  QDRVGAQEVLMPTLQSADLWKRSGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITDLFGQ 141

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  +Y +M ++
Sbjct: 142 TVKSYKDLPQVLYHIQWKFRDEMRPRFGVMRGREFLMKDAYSFDLDYESAVATYRRMLLA 201

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG++++PMRA++GPIGG+LSHEF++LA TGE+ VF      +     E  D +
Sbjct: 202 YLRTFQRLGVRAVPMRADTGPIGGELSHEFLILAPTGESGVFYDAALEEQDWLDEPVDTN 261

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I+L +   + T PYAAT ++H+E  + ++P  ++   RG+EVGHIFYFG KY+  M  
Sbjct: 262 SPIALEAFFNRVTTPYAATDEMHDEAGWQAVPAERQREGRGVEVGHIFYFGDKYTRSMDV 321

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G DG   Y +MGSYGIG  R+  A+IE+ HD  GIIWPD+VAPF+  ++N+K  D++
Sbjct: 322 SVSGPDGNQLYPEMGSYGIGVSRLAGAIIEACHDDNGIIWPDAVAPFRAVILNLKNGDEL 381

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE+IY+   +      +DD  E+ G +FA ADL+G P Q++VG +   + KVE+K 
Sbjct: 382 CDAICERIYSTNEEA---FLYDDRAERAGVKFADADLMGHPWQIVVGPRGAKEGKVELKR 438

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R ++S+++ +   
Sbjct: 439 RATGERHEVSVDDALALV 456


>gi|304319826|ref|YP_003853469.1| prolyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303298729|gb|ADM08328.1| prolyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 446

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/448 (51%), Positives = 317/448 (70%), Gaps = 3/448 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ +LP+L+E P +A IASH+LMLR+GM+ Q + GIY+WLPLG K L  V AI+REE
Sbjct: 1   MKLSRTYLPLLKETPAEAVIASHRLMLRSGMVRQQAAGIYAWLPLGLKVLKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G  E+ +PT+Q A LW +SGRYD+YG EMLRL DR+ + M+YGPT+EE++T++ R+
Sbjct: 61  QERAGVAELLMPTIQPASLWHQSGRYDAYGPEMLRLKDRHGRDMLYGPTNEEMITELVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T + IQ KFRDE+RPRFGVMR REFLMKDAYSFDL+PE ++ SY + F +
Sbjct: 121 GIKSYKELPKTLFHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLSPEAARRSYLRFFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IP+RA++GPIGG LSHEF+VLA+TGE++VF +K  ++   P  + D+ 
Sbjct: 181 YLRTFARLGVKAIPVRADTGPIGGKLSHEFVVLAETGESEVFTAKGLVEKTPPPTSLDY- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +  +WT  YAAT ++H+E  F +LPE++R+ ARGIEVGHIFYFGTKYS PM  
Sbjct: 240 -DGDLEPLFAEWTGTYAATDEMHDEAAFLALPEDQRLQARGIEVGHIFYFGTKYSEPMQF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DG+  +V+MGSYGIG  R+V A+IE+ HD +G  WP  VAP+++ L+N+K     
Sbjct: 299 AVEGPDGRA-FVEMGSYGIGVSRLVGALIEAHHDDQGCRWPVPVAPYEVGLVNLKTGHDG 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++Y      G DV  DD G++ G +FA  DL+G PL V +G + V   + E+K 
Sbjct: 358 TDGACHRLYDEAVAAGLDVLLDDSGDRAGEKFARMDLIGLPLIVTIGPRGVEAGQAEVKD 417

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R TG ++++ L  +++Y        R +
Sbjct: 418 RRTGAKQEVPLTGLVDYLRSAILPQRRL 445


>gi|126728909|ref|ZP_01744724.1| prolyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710839|gb|EBA09890.1| prolyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 445

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/445 (52%), Positives = 315/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q   GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRLMLRAGMIKQAQAGIYSWLPLGYKVLKKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRY++YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYEAYGEEMLRITDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    + + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGTRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    S++E++T+ YA T + H+E LF  +PE +R +ARGIEVG IFYFGTKYS  M+A
Sbjct: 241 SVEECQSVLEEFTSRYARTDETHDEALFGEIPEERRRTARGIEVGQIFYFGTKYSDAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +   G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   +IN+K  D  
Sbjct: 301 VVQDHSGAQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIINLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IY  L K G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEAIYLDLVKSGLEPLYDDTDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+M  E+ +      ++N+
Sbjct: 421 RRTGESEEMPPEQAVERIRQIYANH 445


>gi|149914370|ref|ZP_01902901.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149811889|gb|EDM71722.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 455

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/447 (51%), Positives = 315/447 (70%), Gaps = 1/447 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQASAGIYSWLPMGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R   + M +PTLQ ADLW ESGRYD YG+EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QIRARHVPMLMPTLQPADLWRESGRYDDYGEEMLRIKDRQGRDLLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFFMKDGYNFDLTREDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRAESGPIGGD +HEF+VLA+TGE+ VF   +  D        D+ 
Sbjct: 181 YLRTYERMGLQAIPMRAESGPIGGDDTHEFLVLAETGESGVFYDSEITDLRFGDREIDYT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            + +  +++E++T+ YA T D H+E +F D +PE +R S RGIEVG IFYFGTKYS PM 
Sbjct: 241 SVEACQAVMEEFTSRYARTDDTHDESVFHDRVPEERRRSGRGIEVGQIFYFGTKYSEPMG 300

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           AT +  DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF   ++N+K  D 
Sbjct: 301 ATVQDRDGNTVPVHMGSHGIGVSRLIGAIIEASHDDRGIIWPEGVTPFHAGIVNLKTGDA 360

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE IYA L+ +G +  +DD  ++ G++FA  DL+G P ++ VG + + +  VE+ 
Sbjct: 361 EADAACEAIYASLTALGLEPLYDDTDDRAGAKFATMDLIGLPWRITVGPRGLKNGVVELT 420

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R TG  E++  E+ +   +  ++ +R
Sbjct: 421 SRRTGESEELPPEQAVEKLARIYAAHR 447


>gi|162148795|ref|YP_001603256.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787372|emb|CAP56967.1| Prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 476

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/438 (51%), Positives = 307/438 (70%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A++ SH+LMLR G+I Q + GIY+WLP G + L N+  I+REE
Sbjct: 39  MRLSRGFLPTLKENPAEAQVISHRLMLRAGLIRQTAAGIYAWLPAGWRVLQNIARIVREE 98

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 99  QDAIGAQELLMPTVQSAELWKRSGRYDAYGPEMLRIQDRHERELLYGPTNEEMITDLFGQ 158

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL    +  SY +M ++
Sbjct: 159 VVKSYRELPQVLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDYASAVDSYRRMMLA 218

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPM A++GPIGG+LSHEF++LA TGE+ VF    F +    S+  D D
Sbjct: 219 YLRTFQRLGVRAIPMVADTGPIGGELSHEFLILAPTGESGVFFDGAFEEQDWLSDPVDID 278

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL++   + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 279 DRESLDAFFTRMTSFYAATDEKHDEAAWADVPAERRREGRGIEVGHIFHFGRKYTESMDI 338

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   Y +MGSYGIG  R+VAA+IE+SHD  GIIWPDSVAPF+ +++N+K  D  
Sbjct: 339 TVSGPDGAPLYPEMGSYGIGVSRLVAAIIEASHDDNGIIWPDSVAPFRAAILNLKTGDAA 398

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA          +DD GE+ G +FA ADL+G P QVIVG +   + KVE+K 
Sbjct: 399 CDAICEQVYA---AAPESFLYDDRGERAGVKFADADLMGHPWQVIVGPRGAKEGKVELKR 455

Query: 421 RLTGIREDMSLEEVINYA 438
           R  G R ++S+++ +   
Sbjct: 456 RADGARFELSVDDALARI 473


>gi|58038568|ref|YP_190532.1| prolyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|81819190|sp|Q5FUU9|SYP_GLUOX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58000982|gb|AAW59876.1| Prolyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 438

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/438 (51%), Positives = 302/438 (68%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K F P L+E P +A+IASH+LMLR G++ Q + GIY+WLP G + L N+  IIREE
Sbjct: 1   MRLTKAFQPTLKEVPAEAQIASHRLMLRAGLVRQTASGIYAWLPAGLRVLRNIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PTLQSA+LW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TDIF S
Sbjct: 61  QDAIGAQEVLMPTLQSAELWRRSGRYDAYGPEMLRIQDRHGRDLLYGPTNEEMITDIFGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD + EG+  SY +M +S
Sbjct: 121 SVKSYKELPKALYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDASYEGAVASYRRMMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF RLG++++PM A++GPIGGDLSHEF+VLA TGE+ VF      +    S   D D
Sbjct: 181 YLRIFQRLGVRAVPMVADTGPIGGDLSHEFLVLAPTGESAVFFDAALEEQDWLSRPVDCD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL +     T  YAAT + H+E  +  +P  ++   RGIEVGHIFYFGTKY+  M  
Sbjct: 241 DAESLATFFATVTDHYAATDEKHDEAEWAKVPAERKREGRGIEVGHIFYFGTKYTASMGI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   +  MGSYG+G  R+V A+IE+SHD  GIIWP SVAP++ +++N++  D+ 
Sbjct: 301 EVSGPDGAPFHPHMGSYGVGVSRLVGAIIEASHDDAGIIWPASVAPYRAAILNLRQDDEA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   C++IY    +    + +DD  E+ G +F  ADL+G P Q+IVG +   + KVE+K 
Sbjct: 361 CDAICDRIYGTDPEN---LLYDDRSERAGVKFNDADLMGHPWQIIVGPRGAKEGKVELKQ 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R ++S+E+ +   
Sbjct: 418 RATGERFELSVEDALAKI 435


>gi|162139874|ref|YP_745105.2| prolyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|148887022|sp|Q0BSM0|SYP_GRABC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 440

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/441 (51%), Positives = 309/441 (70%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+IASH+LMLR G+I Q + GIY+WLP G + L+ +  I+R+E
Sbjct: 1   MRLSRALIPTLKETPAEAQIASHRLMLRAGLIQQEAAGIYAWLPAGLRVLNAIANIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   GA E+ +PT+QSADLW ESGRYD+YG EMLRL DR+++ ++YGPT+EEV+TDI+R 
Sbjct: 61  QAGIGAQEVLMPTIQSADLWRESGRYDAYGPEMLRLKDRHERDLLYGPTNEEVITDIYRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDL   G+  SY ++ +S
Sbjct: 121 SVKSYRELPQMAYQIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDYAGAVRSYRRIMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F RLG+K+IPM A++GPIGGDLSHEFI+LA TGE++VF    F +      + + D
Sbjct: 181 YMRTFQRLGVKAIPMLADTGPIGGDLSHEFIILAPTGESEVFYDAAFEEIDWSGASFNVD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L    +  T  YAAT + H+   +++LPE +R + RGIEVGHIFYFGTKYS  ++ 
Sbjct: 241 SDADLERFFQTITGHYAATDEKHDTAAYEALPEARRRTGRGIEVGHIFYFGTKYSKALNM 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG+  + +MGSYGIG  R+VAAVIE+SHD  GIIWPDS+APF+ +++N+K  D  
Sbjct: 301 TVAGRDGQKLHPEMGSYGIGVSRMVAAVIEASHDEAGIIWPDSIAPFRAAVLNLKNGDAA 360

Query: 361 CRDACEKIYARLSKVGCD-VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C    E +Y    ++G     +DD  E+ G +FA ADL+G P QV++G +  +  +VE+K
Sbjct: 361 CDAMAEDVY---RRIGVRHALYDDRDERAGVKFADADLMGHPWQVVIGPRGAAAGRVELK 417

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R TG R ++++E+ +     
Sbjct: 418 RRRTGERVELTVEDALARIRE 438


>gi|114316122|gb|ABI62182.1| prolyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 499

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/441 (51%), Positives = 309/441 (70%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+IASH+LMLR G+I Q + GIY+WLP G + L+ +  I+R+E
Sbjct: 60  MRLSRALIPTLKETPAEAQIASHRLMLRAGLIQQEAAGIYAWLPAGLRVLNAIANIVRDE 119

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   GA E+ +PT+QSADLW ESGRYD+YG EMLRL DR+++ ++YGPT+EEV+TDI+R 
Sbjct: 120 QAGIGAQEVLMPTIQSADLWRESGRYDAYGPEMLRLKDRHERDLLYGPTNEEVITDIYRH 179

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDL   G+  SY ++ +S
Sbjct: 180 SVKSYRELPQMAYQIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDYAGAVRSYRRIMLS 239

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F RLG+K+IPM A++GPIGGDLSHEFI+LA TGE++VF    F +      + + D
Sbjct: 240 YMRTFQRLGVKAIPMLADTGPIGGDLSHEFIILAPTGESEVFYDAAFEEIDWSGASFNVD 299

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L    +  T  YAAT + H+   +++LPE +R + RGIEVGHIFYFGTKYS  ++ 
Sbjct: 300 SDADLERFFQTITGHYAATDEKHDTAAYEALPEARRRTGRGIEVGHIFYFGTKYSKALNM 359

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG+  + +MGSYGIG  R+VAAVIE+SHD  GIIWPDS+APF+ +++N+K  D  
Sbjct: 360 TVAGRDGQKLHPEMGSYGIGVSRMVAAVIEASHDEAGIIWPDSIAPFRAAVLNLKNGDAA 419

Query: 361 CRDACEKIYARLSKVGCD-VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C    E +Y    ++G     +DD  E+ G +FA ADL+G P QV++G +  +  +VE+K
Sbjct: 420 CDAMAEDVY---RRIGVRHALYDDRDERAGVKFADADLMGHPWQVVIGPRGAAAGRVELK 476

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R TG R ++++E+ +     
Sbjct: 477 RRRTGERVELTVEDALARIRE 497


>gi|310815331|ref|YP_003963295.1| prolyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754066|gb|ADO41995.1| prolyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 445

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/433 (53%), Positives = 314/433 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q S GIY+WLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQILSHRYMLRAGMIKQESAGIYAWLPLGYKVLSRLEKIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD+YG EMLR+ DRN + M++GPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYDAYGPEMLRMTDRNKREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFLMKDGYNFDLTREDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPMRA+SGPIGGD +HEF+VLA+TGE++VF  +D     +     ++D
Sbjct: 181 YLRTYERMGLTAIPMRADSGPIGGDDTHEFLVLANTGESEVFYDEDVTRLKLGERAINYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   + +I +++T PYA T + H+  LFD++PE +R   RGIEVG IFYFGTKYS PM A
Sbjct: 241 NREEVAAICQEFTTPYARTDETHDAALFDAIPEGRRKVGRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + A+GK   V+MGS+GIG  R++ A+IE++HD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQNAEGKQVPVEMGSHGIGVSRLIGALIEANHDDKGIIWPEGVTPFHVGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE ++     +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALHDSFVALGLDPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEE 433
           R TG+ E++  EE
Sbjct: 421 RRTGVSEELPPEE 433


>gi|293374695|ref|ZP_06621003.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325840610|ref|ZP_08167091.1| proline--tRNA ligase [Turicibacter sp. HGF1]
 gi|292646609|gb|EFF64611.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325490259|gb|EGC92592.1| proline--tRNA ligase [Turicibacter sp. HGF1]
          Length = 420

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 180/443 (40%), Positives = 255/443 (57%), Gaps = 26/443 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+ +LR G I Q + G+Y++LPL ++ L+NV  I+R+E
Sbjct: 1   MKQSMMFIPTLREVPSDAEIRSHQFLLRAGFIKQVAAGVYTYLPLAKRVLNNVEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ  +LW ESGR+D YG E++RL DRN++    GPTHEEV+T + R 
Sbjct: 61  LDAIGGNELLMPALQPKELWDESGRWDVYGSELMRLTDRNNREFALGPTHEEVITHVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQIQ KFRDE RPRFG+MR REF+MKDAYSF  T E    +YN    +
Sbjct: 121 FLNSYKKLPLTVYQIQTKFRDEARPRFGLMRGREFIMKDAYSFHATQESLDEAYNNFVKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGG  S EF+ LA+ GE  +  S                
Sbjct: 181 YTNIFTRCGLNFRMVEADSGQIGGSQSAEFMALAEVGEDTIVYSTTGSFAANIEVADLEV 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              S + +     A                         +GIEVGH+F  GTKYS PM+A
Sbjct: 241 GAPSPDGVGVVAHA-------------------------KGIEVGHVFKLGTKYSEPMNA 275

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   + K   + MG YGIG  RV+ AVIE ++D  G+IWP  +APF I ++ +      
Sbjct: 276 VFLDENQKKQPIIMGCYGIGVSRVMMAVIEQNNDENGMIWPKGIAPFDIHVVPVDVKKAD 335

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A E IYA L   G +V  DD  E+ G +F+ ADL+G P+++ VG + ++D  VE+K 
Sbjct: 336 QLEAAENIYAELKAAGFEVLLDDRKERAGVKFSDADLIGLPIRITVG-RGIADGIVEVKV 394

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++++ +++ +   ++ 
Sbjct: 395 RQTGEVAEVAVADLMTFVKEKYE 417


>gi|695786|emb|CAA58846.1| orf5 [Zymomonas mobilis]
          Length = 443

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/440 (52%), Positives = 305/440 (69%), Gaps = 2/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L     IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTASGIYAWLPLGLRVLGRNEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA E+ +PTLQ+ADLW ESGRYD+YG EMLR  DR++  ++YGPT+EE++T + R 
Sbjct: 61  QARAGAAELLMPTLQTADLWPESGRYDAYGPEMLRFKDRHNCELLYGPTNEEMITALIRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY  L   FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV 
Sbjct: 121 NLQSYAILAGIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVG 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE  VF      + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGERHVFYHS-NWEQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT +  +    ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAATDEKRDPLR-EAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      +E+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVIELKN 418

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +G ++ +S+E+  N  + 
Sbjct: 419 RASGEKQTISVEDAFNLLTA 438


>gi|209545456|ref|YP_002277685.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533133|gb|ACI53070.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 438

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/438 (51%), Positives = 307/438 (70%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A++ SH+LMLR G+I Q + GIY+WLP G + L N+  I+REE
Sbjct: 1   MRLSRGFLPTLKENPAEAQVISHRLMLRAGLIRQTAAGIYAWLPAGWRVLQNIARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 61  QDAIGAQELLMPTVQSAELWKRSGRYDAYGPEMLRIQDRHERELLYGPTNEEMITDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL    +  SY +M ++
Sbjct: 121 VVKSYRELPQVLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDYASAVDSYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPM A++GPIGG+LSHEF++LA TGE+ VF    F +    S+  D D
Sbjct: 181 YLRTFQRLGVRAIPMVADTGPIGGELSHEFLILAPTGESGVFFDGAFEEQDWLSDPVDID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL++   + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 241 DRESLDAFFTRMTSFYAATDEKHDEAAWADVPAERRREGRGIEVGHIFHFGRKYTESMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   Y +MGSYGIG  R+VAA+IE+SHD  GIIWPDSVAPF+ +++N+K  D  
Sbjct: 301 TVSGPDGAPLYPEMGSYGIGVSRLVAAIIEASHDDNGIIWPDSVAPFRAAILNLKTGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA          +DD GE+ G +FA ADL+G P QVIVG +   + KVE+K 
Sbjct: 361 CDAICEQVYA---AAPESFLYDDRGERAGVKFADADLMGHPWQVIVGPRGAKEGKVELKR 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R  G R ++S+++ +   
Sbjct: 418 RADGARFELSVDDALARI 435


>gi|330994071|ref|ZP_08318001.1| Prolyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329759017|gb|EGG75531.1| Prolyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 440

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/438 (51%), Positives = 303/438 (69%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR GMI Q + GIY+WLP G + L N+  I+R E
Sbjct: 1   MRLSRSFLPTLKENPTEAQITSHRLMLRAGMIRQTAAGIYAWLPTGLRVLRNIANIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ M++GPT+EE++TD+F  
Sbjct: 61  QDAIGAQELLMPTMQSAELWKRSGRYDAYGPEMLRIQDRHERDMLFGPTNEEMVTDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFDL    +  +Y +M +S
Sbjct: 121 AIKSYKELPQVLYQIQWKFRDEVRPRFGVMRGREFYMKDAYSFDLDHAAAVDTYRRMMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPMRA++GPIGG+LSHEF++LA TGE+ VF      +     E  D +
Sbjct: 181 YLRTFQRLGVRAIPMRADTGPIGGELSHEFLILAPTGESGVFFDSALEEQDWVGETIDVN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L +     T+ YAAT ++H+E  +  +P  +R   RGIEVGHIF FG KY+  M  
Sbjct: 241 DRDALGAFFTSLTSFYAATDEMHDEAAWAKVPAERRREGRGIEVGHIFNFGRKYTQSMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   + +MGSYGIG  R+VAA+IE+SHD  GIIWP+SVAPF+  +IN+K  D  
Sbjct: 301 AVSGPDGAPLHPEMGSYGIGVSRLVAAIIEASHDENGIIWPESVAPFRAVIINLKNGDAQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CEK+YA       D+ +DD  E+ G++FA ADLLG P Q+IVG +   + KVE+K+
Sbjct: 361 CDAICEKLYA---AAPDDLLYDDRAERAGAKFADADLLGHPWQLIVGPRGAKEGKVEVKN 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R + +++  +   
Sbjct: 418 RRTGERTEETVDAALALI 435


>gi|296116519|ref|ZP_06835129.1| prolyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976731|gb|EFG83499.1| prolyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 439

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/438 (51%), Positives = 301/438 (68%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q S GIY+WLP G K L N+  I+R E
Sbjct: 1   MRLSRSFLPTLKENPAEAQITSHRLMLRAGLIRQTSAGIYAWLPAGLKVLRNIANIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA EM +PTLQS++LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 61  QDAIGAQEMLMPTLQSSELWKRSGRYDAYGPEMLRIRDRHERDLLYGPTNEEMVTDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y +Q KFRDE+RPRFGVMR REF MKDAYSFD   + +  SY +M ++
Sbjct: 121 VVKSYRELPQVLYHVQWKFRDEVRPRFGVMRGREFYMKDAYSFDADYDAAVDSYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IPM A++GPIGG+LSHEF+VLA TGE+ VF    F +    SE  D  
Sbjct: 181 YLRTFQRLGVKAIPMVADTGPIGGELSHEFLVLAPTGESGVFFDGAFEEQDWLSEEVDIA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL     + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 241 DRASLAKFFARMTSFYAATDEKHDEAQWAKVPVERRREGRGIEVGHIFHFGRKYTESMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G DG   + +MGSYGIG  R+VAA+IE+SHD +GIIWP++VAPF   +IN+K  D  
Sbjct: 301 SVSGPDGAPLFPEMGSYGIGVSRLVAAIIEASHDEQGIIWPETVAPFGAVIINLKNGDAQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C + CE++YA        + +DD  E+ G +FA ADL+G P QVIVG +      VE+K+
Sbjct: 361 CDEICERLYA---AAPDRLLYDDRPERAGVKFADADLMGHPWQVIVGPRGAKAGVVELKN 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G R ++ ++ V+   
Sbjct: 418 RASGERSELPIDAVLTRI 435


>gi|190570494|ref|YP_001974852.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019252|ref|ZP_03335059.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356766|emb|CAQ54125.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995361|gb|EEB56002.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 419

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 218/441 (49%), Positives = 299/441 (67%), Gaps = 22/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+LP L+E P  AEI SH+ +LR G+I Q + GIYSWLPLG   L N+  IIR+E
Sbjct: 1   MRLSQYYLPTLKETPAGAEIISHQYLLRAGLIKQTASGIYSWLPLGLLVLKNIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+ +P +Q A LW ESGRYD YGKEMLR+ DR++  M++GPTHEEV+TD+ R+
Sbjct: 61  ---IGAIEVLMPCVQPASLWRESGRYDDYGKEMLRIKDRHESDMLFGPTHEEVVTDLIRN 117

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 118 TVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 177

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++GPIGG+LSHEF +LA+TGE+ ++      +     +     
Sbjct: 178 YIKIFKRMGLTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKLFELLESEDIESLK 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I             YA   D+H+ +    + + +   ++GIE+GHIFYFG KYS PM A
Sbjct: 238 SI-------------YAVADDMHDPESC-PITQEQLNVSKGIEIGHIFYFGDKYSKPMKA 283

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP++VAPFK+ LIN++     
Sbjct: 284 SVTSQDGKNVNMHMGSYGIGVSRLVGAIIEAFHDDKGIIWPEAVAPFKVGLINLQTK--- 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD  E +G +FA  DL+G P Q+I+G K VS++ VE+K+
Sbjct: 341 VTEAADKIYKALKSD--EVLYDDTDESVGVKFARMDLIGLPWQIIIGKKAVSENIVEVKN 398

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  E++ +EE IN  S +
Sbjct: 399 RATGEVEEIQVEEAINRFSAK 419


>gi|91205619|ref|YP_537974.1| prolyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|157827332|ref|YP_001496396.1| prolyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|114152245|sp|Q1RIC9|SYP_RICBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980150|sp|A8GU77|SYP_RICB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91069163|gb|ABE04885.1| Prolyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|157802636|gb|ABV79359.1| prolyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 432

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 212/432 (49%), Positives = 297/432 (68%), Gaps = 13/432 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E+P +A+I SHKLMLR+GMI Q + GIYSWLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEDPSEAQITSHKLMLRSGMIRQQAAGIYSWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G +E+ +P +Q A LWVESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR+
Sbjct: 61  MDKAGCLEVLMPCIQPAHLWVESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMVTDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDEESAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ ++P+ A++GPIGG LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YINTFRDLGVFAVPVIADNGPIGGKLSHEFHIIAETGESNIYYDKRFKTL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + +  +E+  + YAA  + H+     S  E    S++GIEVGHIFY GTKYS+ M+A
Sbjct: 231 -KDNPDIDIEEIKSWYAAAEEKHDASKLSSDKEI--TSSKGIEVGHIFYIGTKYSVNMNA 287

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP +VAPFKISLIN+  HD  
Sbjct: 288 LINDEHGKLTPIEMSSYGIGISRLVAAIIEANSDAKGIIWPIAVAPFKISLINLNIHDSK 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E++Y  L     +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K+
Sbjct: 348 CLELAERVYNELLAQNIEVLYDDTDVRAGSKFATHDLIGSPYQIIIGPKKAANNIVELKN 407

Query: 421 RLTGIREDMSLE 432
           R  G  ED+ L 
Sbjct: 408 RKNGEIEDIDLN 419


>gi|148259950|ref|YP_001234077.1| prolyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|326403096|ref|YP_004283177.1| prolyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|166980092|sp|A5FX26|SYP_ACICJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146401631|gb|ABQ30158.1| prolyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|325049957|dbj|BAJ80295.1| prolyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 437

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/439 (50%), Positives = 308/439 (70%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+I SH+LMLR G+I Q S GIY+WLP G + L N+  I+REE
Sbjct: 1   MRLSRSLIPTLKETPAEAQIVSHRLMLRAGLIRQQSAGIYAWLPAGLRVLHNIANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G+ E+ +PT+QSA+LW ESGRYD+YG EMLR+ DR+D+ M+YGPT+EE++T I R 
Sbjct: 61  QARAGSQEILMPTIQSAELWRESGRYDAYGPEMLRIRDRHDREMLYGPTNEEMLTAIMRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   YQIQ KFRDE+RPRFGV+R REF MKD YSFDL  EG+  SY +M ++
Sbjct: 121 SVQSYRDLPQMLYQIQWKFRDEVRPRFGVLRGREFYMKDGYSFDLDYEGAVESYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F R+G++++PMRA++GPIGG+LSHEF +LA TGE+ VF    F    +  +  D++
Sbjct: 181 YMRTFKRMGVRAVPMRADTGPIGGNLSHEFHILAPTGESGVFYDSSFETIELGDDAYDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L++  ++ T+ YAAT + H+E  +  +PE++R   RGIEVG IFYFGTKYS  M+ 
Sbjct: 241 ARADLDAFFDRMTSLYAATDEKHDEAAWAKVPEDRRREGRGIEVGQIFYFGTKYSQAMNF 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   + +MGSYGIG  R+  A+IE+SHD  GIIWPD++APF+ S++N++  DQV
Sbjct: 301 TVVGPDGARLHPEMGSYGIGVSRLTGAIIEASHDEAGIIWPDAIAPFRASILNLRQGDQV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE+IY  L   G D  +DD   + G +FA ADL+G P QVIVG +  +  +VE+KH
Sbjct: 361 TDALCERIYDAL---GRDALYDDREARAGEKFADADLMGHPWQVIVGPRGAAKGQVELKH 417

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG R ++ +E  +    
Sbjct: 418 RRTGERAELDIESALAKVR 436


>gi|67458992|ref|YP_246616.1| prolyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|75536572|sp|Q4ULX2|SYP_RICFE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|67004525|gb|AAY61451.1| Prolyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 427

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 215/439 (48%), Positives = 304/439 (69%), Gaps = 12/439 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++ +K F             
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYNKRFKTL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + N  VE+  + YAA  + H+      + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 231 -KDNPNIDVEEIKSWYAAAEEKHDVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+VAA+IE++ + KGIIWP +VAPFK+SLIN+  HD  
Sbjct: 289 LINDEHGKLTPVEMSSYGIGISRLVAAIIEANCNEKGIIWPSNVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K+Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +D  VE+K+
Sbjct: 349 CVELAAKVYKELSAQNIEVLYDDTEARAGSKFATHDLIGSPYQIIIGPKKAADDIVELKN 408

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G+ ED+ +E +I+Y  
Sbjct: 409 RKIGVIEDIEVENLIHYIK 427


>gi|157803870|ref|YP_001492419.1| prolyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|166980151|sp|A8EZ51|SYP_RICCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157785133|gb|ABV73634.1| prolyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 438

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 213/446 (47%), Positives = 303/446 (67%), Gaps = 12/446 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A+I SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQITSHKLMLRSGMIRQQAAGIYTWLPLGLKILKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+++YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFENYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+MF +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LS+EF ++A+TGE+ ++  K F  F          
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSNEFHIIAETGESTLYYDKRFKIF---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + +  VE+  + YAA+ + H+      + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 231 -KDNPDIDVEEIKSWYAASEEKHDVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEHGKLTPVEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E+ Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE K+
Sbjct: 349 CTELAERAYKELSAQNIEVLYDDTDVRPGSKFATHDLIGSPYQIIIGPKKAANNIVEFKN 408

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R +G+ ED+ +  +           +
Sbjct: 409 RKSGVIEDIKIGNLKKLIMSCLRQQK 434


>gi|157825653|ref|YP_001493373.1| prolyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|166980149|sp|A8GN90|SYP_RICAH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157799611|gb|ABV74865.1| prolyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 427

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 212/439 (48%), Positives = 299/439 (68%), Gaps = 12/439 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+YFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+   
Sbjct: 1   MLLSQYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVSLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+++YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFNNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGKLSHEFHIIAETGESTIYYDKRFKTL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + +  V++  + YAA  + H+      + E +  S++GIEVGHIFY G+KYS+ M A
Sbjct: 231 -KDNPDIDVDEIKSWYAAAEEKHDINKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMKA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEHGKLAPVEMSSYGIGISRLVAAIIEANCDEKGIIWPFSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAAKAYKDLSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G  ED+ +E +INY  
Sbjct: 409 RKSGNIEDIEVENLINYIK 427


>gi|15604249|ref|NP_220765.1| prolyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|6226191|sp|Q9ZDE7|SYP_RICPR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3860941|emb|CAA14841.1| PROLYL-TRNA SYNTHETASE (proS) [Rickettsia prowazekii]
 gi|292571991|gb|ADE29906.1| Prolyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 432

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/440 (48%), Positives = 300/440 (68%), Gaps = 12/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLPIL+E P +A++ SHKLMLR+GMI + + G+Y+WLPLG K L N+  ++R  
Sbjct: 1   MLLSKYFLPILKEEPSEAKVISHKLMLRSGMIMKQAAGLYTWLPLGLKVLKNIENVVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR++ YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKVGALEVLMPCIQPAHLWIESGRFEHYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  + + ++YNKM+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINQKNAVNTYNKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YMNTFRDLGVFAIPVIADNGPIGGNLSHEFHIVAETGESTIYYDKRFKIL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + +  VE+    YAA  + H+     S PE    S +GIEVGHIFY G+KYS+ M+A
Sbjct: 231 -KDNPDIDVEEIKGWYAAAEEKHDVNKLSSFPEGITRS-KGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+ AA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLIPVEMSSYGIGISRLAAAIIEANCDKKGIIWPCSVAPFKVSLINLNIHDNK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K    LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAAKTDKELSHQNIEVLYDDTDARPGSKFATHDLIGSPYQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG+ ED+ +E +INY  +
Sbjct: 409 RKTGVLEDIEVENIINYIKN 428


>gi|225631202|ref|ZP_03787900.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591110|gb|EEH12294.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 422

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/441 (48%), Positives = 297/441 (67%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIY+WLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYTWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+G   I +RA++GPIGG+LSHEF +LA+TGE+ ++    F +     +     
Sbjct: 181 YIKIFKRMGFTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKFSELLESEDIESLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I             YA   D+H+ +    + + +   ++GIE+GHIFYFG KYS PM A
Sbjct: 241 SI-------------YAVADDMHDPETC-PISQEQLNVSKGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+SVAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPESVAPFRIGLINLQPK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K + +  VE+K+
Sbjct: 344 VTEAADKIYKALKSD--EVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAIDEKIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE +N+ S +
Sbjct: 402 RATGEVKEMPIEEAVNHFSTK 422


>gi|51473574|ref|YP_067331.1| prolyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|81826313|sp|Q68WZ3|SYP_RICTY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51459886|gb|AAU03849.1| Proline translase [Rickettsia typhi str. Wilmington]
          Length = 428

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 216/439 (49%), Positives = 300/439 (68%), Gaps = 12/439 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLPIL+E P +A++ SHKLMLR+GMI + + G+Y+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPILKEEPSEAQVISHKLMLRSGMIMKQASGLYTWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR++ YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKVGALEVLMPCIQPAHLWIESGRFEYYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E + ++YNKM+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINQENAVNTYNKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKRFKIL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + +  VE+  + YAA  + H+     S P     S++GIEVGHIFY G+KYS+ M+A
Sbjct: 231 -KDNPDIDVEEIKSWYAAAEEKHDVNKLSSFP-EGITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+ AA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLIPVEMSSYGIGISRLAAAIIEANCDKKGIIWPFSVAPFKVSLINLNIHDNK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K    LS    +V +DD   + GS+FA  DL+G P QVI+G K  +++ VE+K 
Sbjct: 349 CVELAAKTDKELSNKNIEVLYDDTEARPGSKFATHDLIGSPYQVIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+ ED+ +E +INY  
Sbjct: 409 RKTGVLEDIEIENLINYIR 427


>gi|58698845|ref|ZP_00373719.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630527|ref|YP_002727318.1| prolyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|254782927|sp|C0R3N5|SYP_WOLWR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58534643|gb|EAL58768.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592508|gb|ACN95527.1| prolyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 422

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 217/441 (49%), Positives = 300/441 (68%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIYSWLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYSWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GAIE+ +P +Q A+LW ESGRYD YGKEMLR+ DR+++ M++GPTHEEV TD+ R 
Sbjct: 61  MDKSGAIEVLMPCVQPANLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEVATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++GPIGG+LSHEF +LA+TGE+ ++    F +     +     
Sbjct: 181 YIKIFKRMGLTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKFSELLESEDVESLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I             YA   D+H+ +    + + +   ++GIE+GHIFYFG KYS PM A
Sbjct: 241 SI-------------YAVADDMHDPETC-PISQEQLNVSKGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+SVAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPESVAPFRIGLINLQTK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K + +  VE+K+
Sbjct: 344 VTEAADKIYKALKSD--EVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAIDEKIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE IN+ S +
Sbjct: 402 RATGEVKEMQIEEAINHFSTK 422


>gi|239947222|ref|ZP_04698975.1| prolyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|241068545|ref|XP_002408465.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|215492453|gb|EEC02094.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|239921498|gb|EER21522.1| prolyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 426

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/438 (48%), Positives = 301/438 (68%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLM R+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMFRSGMIRQQAAGIYTWLPLGLKLLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F      S      
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKRFKTLKDNS------ 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  VE+  + YAA  + H+      + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 235 -----DIDVEEIKSWYAAAEEKHDVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEHGKLTPVEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +D+ VE+K+
Sbjct: 349 CVELAAKAYKELSAQNIEVLYDDTEARAGSKFATHDLIGSPYQIIIGPKKAADNIVELKN 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEIGSLMSIL 426


>gi|209964526|ref|YP_002297441.1| prolyl-tRNA synthetase [Rhodospirillum centenum SW]
 gi|209957992|gb|ACI98628.1| prolyl-tRNA synthetase ProS [Rhodospirillum centenum SW]
          Length = 404

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 216/408 (52%), Positives = 294/408 (72%), Gaps = 6/408 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI Q S GIY+WLPLG + L  V  I+REEQ+R GA EM +PT+QSADLW +SGRY++YG
Sbjct: 1   MIRQTSAGIYAWLPLGWRVLQKVAQIVREEQDRAGAQEMLMPTIQSADLWKQSGRYEAYG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEMLR+ DR+D+ M+YGPT+EE++TDIF++ +KSY++LP   Y IQ KFRDE+RPRFG+M
Sbjct: 61  KEMLRITDRHDREMLYGPTNEEMITDIFKTFVKSYKDLPKNLYHIQWKFRDEIRPRFGLM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REFLMKD YSFDL  EG+K SY +MF++YLR F R+G+K+IPMRA++GPIGGDLSHEF
Sbjct: 121 RGREFLMKDNYSFDLDVEGAKLSYRRMFLAYLRTFARMGIKAIPMRADTGPIGGDLSHEF 180

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+LA+TGE+QVFC + +++  +        +  + +S ++++   Y +      E    +
Sbjct: 181 IILAETGESQVFCDRRWLELDV------LAEAPAPDSDLKEFFDRYTSIYAATEEMHDAA 234

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                 V+ARGIEVGHIFYFG KYS PM A   G DG+   V+MGSYGIG  RVVAA+IE
Sbjct: 235 KAPADLVTARGIEVGHIFYFGKKYSQPMEAIVAGPDGQPVTVEMGSYGIGVSRVVAAIIE 294

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD +GIIWP+ VAPFK++++N+K  D  C   CE +YARLS    +V +DD  E+ G+
Sbjct: 295 ASHDEQGIIWPEPVAPFKLAIVNLKVDDAECSRVCEDLYARLSGAKVEVLYDDRNERPGA 354

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +FA  DL+G P Q+ VG + +    VE+K R TG + ++S+E+ +   
Sbjct: 355 KFADMDLIGVPWQLTVGPRGLKAGVVELKRRATGEKFELSVEDALARV 402


>gi|42520651|ref|NP_966566.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81831258|sp|Q73GW6|SYP_WOLPM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42410390|gb|AAS14500.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 422

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/441 (48%), Positives = 297/441 (67%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIY+WLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYTWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+G   I + A++GPIGG+LSHEF +LA+TGE+ ++    F +     +     
Sbjct: 181 YIKIFKRMGFTPIGVGADTGPIGGNLSHEFHILANTGESTLYYDNKFSELLESEDIESLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I             YA   D+H+ +    + + +   ++GIE+GHIFYFG KYS PM A
Sbjct: 241 SI-------------YAVADDMHDPETC-PISQEQLNVSKGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+ VAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPEEVAPFRIGLINLQTK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K VS++ VE+K+
Sbjct: 344 VTEAADKIYKALKSD--EVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAVSENIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE IN+ S +
Sbjct: 402 RATGEVKEMQIEEAINHFSAK 422


>gi|254453587|ref|ZP_05067024.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198267993|gb|EDY92263.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 428

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/415 (51%), Positives = 288/415 (69%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI Q S GIYSWLPLG K L  +  I+ EEQ R G I + +PT+QSADLW ESGR
Sbjct: 1   MLRAGMIKQSSAGIYSWLPLGFKVLKRIEQIVHEEQERAGHIAIQMPTIQSADLWRESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y++YG EMLR+ DRN   +++ PT EE++TDIFRSH+ SY++LP T YQIQ KFRDE RP
Sbjct: 61  YEAYGDEMLRIKDRNGNDLLFTPTAEELVTDIFRSHVASYKSLPMTLYQIQWKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR REF MKD Y+FDLT E + H+YN+  VSYLR + R+GL++IPMRA SGPIGGD
Sbjct: 121 RFGVMRGREFYMKDGYTFDLTKEDAMHAYNRHLVSYLRTYERMGLQAIPMRAASGPIGGD 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +HEF+VLADTGE++VF      +    +   D+DD+     ++E++T  YA T + H+ 
Sbjct: 181 DTHEFLVLADTGESEVFYDAAVTELSFGNREIDYDDVAQCADVMEEFTTKYARTDETHDP 240

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            LFD++P +++ +ARGIEVG IFYFGTKYS  M AT +G DGK   V MGS+GIG  R++
Sbjct: 241 ALFDAIPADRQRTARGIEVGQIFYFGTKYSDAMGATVQGPDGKPTAVHMGSHGIGVSRLL 300

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+IE+SHD KGIIWP+ V PF + ++N+K  D     AC+ +Y  ++ +G +  +DD  
Sbjct: 301 GAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDADADAACQSLYDAVAALGLEALYDDRD 360

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           E+ GS+F   D++G P ++ VG + + +  VE+  R TG  E+M  E+ I     
Sbjct: 361 ERAGSKFGTMDMIGLPWRITVGPRGLKNGVVELTSRKTGESEEMPPEQAIAKIGE 415


>gi|157964462|ref|YP_001499286.1| prolyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844238|gb|ABV84739.1| Prolyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 437

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 210/431 (48%), Positives = 296/431 (68%), Gaps = 12/431 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 10  MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 69

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++ PT+E+++TDIFR 
Sbjct: 70  MNKAGALEILMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFSPTNEDMITDIFRH 129

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 130 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 189

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F             
Sbjct: 190 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKKFKTL---------- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + +  VE+  + YAA  + H       + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 240 -KDNPDIDVEEIKSWYAAAEEKHEVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 298 LINDEHGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 358 CVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 417

Query: 421 RLTGIREDMSL 431
           R +G+ ED+ +
Sbjct: 418 RKSGVIEDIEV 428


>gi|15892451|ref|NP_360165.1| prolyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|229586653|ref|YP_002845154.1| prolyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|81854111|sp|Q92I92|SYP_RICCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511616|sp|C3PNA1|SYP_RICAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15619605|gb|AAL03066.1| prolyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|228021703|gb|ACP53411.1| Prolyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 426

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/438 (47%), Positives = 296/438 (67%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+  IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K             F 
Sbjct: 181 YINAFRDLGVFVIPVIADNGPIGGNLSHEFHIIAETGESTIYYDK------------KFK 228

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I  +    + A ++   E     + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 229 TLKDNPDIDVEEIKSWYAAAEEKYEVNKLPISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEVGSLMSVL 426


>gi|157828402|ref|YP_001494644.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933112|ref|YP_001649901.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|166980152|sp|A8GRW1|SYP_RICRS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083508|sp|B0BXB9|SYP_RICRO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157800883|gb|ABV76136.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908199|gb|ABY72495.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 426

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/438 (47%), Positives = 297/438 (67%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K             F 
Sbjct: 181 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDK------------KFK 228

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I  +    + A ++   E     + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 229 ILKDNPDIDVEEIKSWYAAAEEKYEVNKLPISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEVGSLMSVL 426


>gi|238650930|ref|YP_002916786.1| prolyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|259511617|sp|C4K2D7|SYP_RICPU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238625028|gb|ACR47734.1| prolyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 426

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 207/438 (47%), Positives = 296/438 (67%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K             F 
Sbjct: 181 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDK------------KFK 228

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I  +    + A ++   E     + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 229 TLKDNPDIDVEEIKSWYAAAEEKYEVNKLPISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ V +K 
Sbjct: 349 CVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVALKD 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEVGSLMSVL 426


>gi|58584338|ref|YP_197911.1| prolyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|81311670|sp|Q5GTK5|SYP_WOLTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58418654|gb|AAW70669.1| Prolyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 425

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/439 (48%), Positives = 294/439 (66%), Gaps = 16/439 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+LP L+E P  A I SH+  LR G+I Q + GIY+WLPLG + L N+  IIR+E
Sbjct: 1   MRLSQYYLPTLKEKPAHARIISHQYSLRAGLIKQIASGIYTWLPLGLRVLKNIEGIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGK MLR+ DR+++ M++GPTHEEV TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKTMLRIRDRHEEDMLFGPTHEEVATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+NLP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSF++  E + +SYN M+ +
Sbjct: 121 IVKSYKNLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFNVNYESALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++G IGG+LSHEF +LA TGE+ ++    F +     +     
Sbjct: 181 YIKIFKRMGLIPIGVRADTGLIGGNLSHEFHILASTGESTLYYDNKFFELLESEDVKSLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I             YA   D+H+ K    +P+ +   ++GIE+GHIFYFG KYS PM+A
Sbjct: 241 SI-------------YAVADDIHDPKTC-PVPQEQLNVSKGIEIGHIFYFGDKYSKPMNA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                DGK+  + MGSYGIG  R+V A+IE+ HD KGI WP++VAPF++ LIN++     
Sbjct: 287 KVTAQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGITWPEAVAPFRVGLINLQTKTAE 346

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KIY+ L     +V +DD    IG +FA  DL+G P Q+IVG K VS++ +EIK+
Sbjct: 347 YVEIANKIYSTLKSD--EVLYDDTEGSIGVKFAKMDLIGLPWQIIVGKKAVSENIIEIKN 404

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG  E++ +EE INY +
Sbjct: 405 RATGKVEEVQIEEAINYFN 423


>gi|118595268|ref|ZP_01552615.1| prolyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
 gi|118441046|gb|EAV47673.1| prolyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
          Length = 411

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 179/441 (40%), Positives = 263/441 (59%), Gaps = 32/441 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK+++   +E P +AE+ SHKLM+R G+I +   G+Y+W+P+G + L  +   IREE
Sbjct: 1   MKASKFYISTFKEAPAEAELTSHKLMIRAGLIKKLGSGLYTWMPMGLRVLKKIENTIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P +Q A+LW E+GR++ +G +ML+++DR+D+   +GPTHEEV+TD+ R+
Sbjct: 61  MQQAGAVELLMPAIQPAELWEETGRWELFGPQMLKISDRHDRPFCFGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ+KFRDE+RPRFGVMR+REFLMKDAYSF    E  KH+Y+ MF +
Sbjct: 121 ELNSYKQLPMNFYQIQMKFRDEIRPRFGVMRAREFLMKDAYSFHADIESLKHTYDLMFKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF +LGL    ++A++G IGGD SHEF VLAD+GE ++   +               
Sbjct: 181 YNAIFTKLGLIFRAVQADNGAIGGDGSHEFHVLADSGEDEIVYDEHSDFAAN-------- 232

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                                   E   D   +    + RGIEVGHIF  GTKYS  M A
Sbjct: 233 -----------------------IEVAKDHPDKRNLKTCRGIEVGHIFQLGTKYSEAMKA 269

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQ 359
           TF    GK   + MG YGIG  R++AA IE +HD KGII+P+S+APF++ +  I      
Sbjct: 270 TFINQSGKPSPMIMGCYGIGVSRIIAAAIEQNHDDKGIIFPESMAPFEVIITPIGYDKSS 329

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++  + +Y  L   G DV  DD G + G  F+ A+L+G P ++ V    + ++K E K
Sbjct: 330 SVKEGVDDLYQLLIAEGYDVLLDDRGLRPGIMFSEAELIGIPHRITVSETTLKENKYEYK 389

Query: 420 HRLTGIREDMSLEEVINYASH 440
           +R     E ++  ++I +   
Sbjct: 390 NRSKTDAEMIASNDLIRHLKS 410


>gi|306841942|ref|ZP_07474620.1| prolyl-tRNA synthetase [Brucella sp. BO2]
 gi|306287975|gb|EFM59383.1| prolyl-tRNA synthetase [Brucella sp. BO2]
          Length = 400

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 227/399 (56%), Positives = 301/399 (75%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           +P+G K L+ V  IIREEQNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++
Sbjct: 1   MPIGLKVLNKVCTIIREEQNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQER 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            M++GPT+EE++TDIFRS+++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYS
Sbjct: 61  EMLFGPTNEEMVTDIFRSYVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYS 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           FDL  EG+K +Y +MFVSYLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+
Sbjct: 121 FDLDYEGAKMAYYRMFVSYLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVY 180

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  +    +VSARGI
Sbjct: 181 CDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGI 240

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP 
Sbjct: 241 EVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPK 300

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P 
Sbjct: 301 AIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPT 360

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QVIVG + V+  +VE+K R TG R+ + ++  IN  + +
Sbjct: 361 QVIVGPRGVAAGEVEVKDRKTGERQSLGIDAAINMLTAQ 399


>gi|34580554|ref|ZP_00142034.1| prolyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28261939|gb|EAA25443.1| prolyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 426

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 207/438 (47%), Positives = 295/438 (67%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIEHIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++ DIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMIMDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+  IP+ A++GPIGG+LSHEF V+A+TGE+ ++  K             F 
Sbjct: 181 YINAFRDLGVFVIPVIADNGPIGGNLSHEFHVIAETGESTIYYDK------------KFK 228

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I  +    + A ++   E     + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 229 ILKDNPDIDVEEIKSWYAAAEEKYEVNKLPISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  +  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELADMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEVGSLMSVL 426


>gi|189182913|ref|YP_001936698.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|189179684|dbj|BAG39464.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 433

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 203/440 (46%), Positives = 291/440 (66%), Gaps = 11/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+P  AEI SHKLMLR GMI Q   GIY+WLPLG K L N+  I+R+ 
Sbjct: 1   MRLSQYFLPLLKEDPAGAEIISHKLMLRAGMIKQACAGIYNWLPLGIKVLQNIQDIVRKN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    IE+ +P +Q A LW ES RY++YGKEML++ DR+D  +++GPT+EE++TDIFRS
Sbjct: 61  MNAAQCIELLMPCIQPASLWKESSRYNAYGKEMLKIKDRHDNDLLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP  FY IQ KFRDE+RPRFGVMRSREF+MKDAYSFD+    +  SYN M+++
Sbjct: 121 SIQSYKDLPKNFYHIQWKFRDEIRPRFGVMRSREFIMKDAYSFDIDQASAIQSYNLMYLT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF  LGLK IP++A++G IGG LSHEF ++  TG+++++      +        D++
Sbjct: 181 YLKIFKDLGLKVIPVQADNGAIGGKLSHEFHIITATGDSKIYYDSTKFNP------FDYN 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +SLN + + +           N+   D++      +  GIEVGHIFYFGTKYS  M A
Sbjct: 235 QDLSLNKLEQLYIVTEDKHKTDQNQISNDTI-----STISGIEVGHIFYFGTKYSELMKA 289

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  +GK   V+MGSYGIG  R++ A+IE++HD  GIIWP +VAPFK+S+IN+  ++  
Sbjct: 290 CIQLQNGKLTAVEMGSYGIGISRLIGAIIEANHDEYGIIWPQNVAPFKVSVINLLPNNDK 349

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+    ++Y  L++   D   DD     G + A  DL+G P Q+I+G  F+  + +E K+
Sbjct: 350 CKQTSNQLYQILTQQKTDALLDDTSSSAGHKLAAHDLIGIPYQIIIGKNFIETATIEFKY 409

Query: 421 RLTGIREDMSLEEVINYASH 440
           R     + +S++ +IN  + 
Sbjct: 410 RHNQQLQKLSIDALINQLTE 429


>gi|148284536|ref|YP_001248626.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|146739975|emb|CAM80015.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 433

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 205/440 (46%), Positives = 290/440 (65%), Gaps = 11/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+P  AEI SHKLMLR GMI Q   GIY+WLPLG K L N+  I+R+ 
Sbjct: 1   MRLSQYFLPLLKEDPAGAEIISHKLMLRAGMIKQACAGIYNWLPLGIKVLQNIQDIVRKN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     E+ +P +Q A LW ES RY++YGKEML++ DR+D  +++GPT+EE++TDIFRS
Sbjct: 61  MNAAQCTELLMPCIQPASLWKESSRYNAYGKEMLKIKDRHDNDLLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP  FY IQ KFRDE+RPRFGVMRSREF+MKDAYSFD+    +  SYN M+++
Sbjct: 121 CIQSYKDLPKNFYHIQWKFRDEIRPRFGVMRSREFIMKDAYSFDIDQTSAIQSYNLMYLT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF  LGLK IP++A++G IGG LSHEF ++  TG+++++      +        D++
Sbjct: 181 YLKIFKDLGLKVIPVQADNGAIGGKLSHEFHIITATGDSKIYYDSTKFNP------FDYN 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +SLN + + +           N+   D     K  +  GIEVGHIFYFGTKYS  M A
Sbjct: 235 QDLSLNKLEQLYIVTEDKHKTYQNQISND-----KISTISGIEVGHIFYFGTKYSELMKA 289

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  +GK   V+MGSYGIG  R++ A+IE++HD  GIIWP +VAPFK+S+IN+  ++  
Sbjct: 290 CIQMQNGKLTAVEMGSYGIGISRLIGAIIEANHDQYGIIWPQNVAPFKVSVINLLPNNDK 349

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+    ++Y  L++   D   DD     G + AV DL+G P Q+I+G  F+  S +E K+
Sbjct: 350 CKQTSNQLYQILTQQKTDALLDDTSSSAGHKLAVHDLIGIPYQIIIGKNFIETSTIEFKY 409

Query: 421 RLTGIREDMSLEEVINYASH 440
           R     + +S++ +IN  + 
Sbjct: 410 RHNHQLQKLSIDALINRLTE 429


>gi|330814001|ref|YP_004358240.1| prolyl-tRNA synthetase Bacterial type [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487096|gb|AEA81501.1| prolyl-tRNA synthetase Bacterial type [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 441

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 225/446 (50%), Positives = 307/446 (68%), Gaps = 7/446 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S +FLPIL++ P DA I SH+LMLR+GMI Q + GIYSWLPLG K L  + +I+R+E
Sbjct: 1   MKLSNFFLPILRDVPSDATIKSHQLMLRSGMIRQSASGIYSWLPLGFKVLKKIESIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GA EM +PT+QSADLW ESGRYD YG EMLR+ DR D+ ++YGPT+EE++T IFR 
Sbjct: 61  QNKAGAQEMLMPTIQSADLWKESGRYDGYGLEMLRIRDRQDRELLYGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++K+Y++LP   Y IQ KFRDE+RPRFG+MR REFLMKD+YSFD   EG+  SYNKMF +
Sbjct: 121 NVKTYKSLPLILYHIQWKFRDEIRPRFGIMRCREFLMKDSYSFDENKEGAIISYNKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RLGL++IPM A++GPIGGDLSHEFI+LADTGE+Q+F SK  +D  I       +
Sbjct: 181 YLKTFERLGLRAIPMAADTGPIGGDLSHEFIILADTGESQIFTSKKILDLKISDFK---N 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
           D  SL  +V+ +T  Y+AT +  N+  FD   E K ++  RGIEVGHIFYFG KYS PM 
Sbjct: 238 DSESLAKMVKSYTDIYSATDEKFNQSDFDKSVEKKDQLVTRGIEVGHIFYFGDKYSKPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHD 358
           A    ++GK+  ++MGSYGIG  R+  A+IE+++    + WP SV PF +++I + K +D
Sbjct: 298 ALVNSSEGKNITIEMGSYGIGVSRLAGAIIEANYKDNVMKWPASVTPFHVAVIYLGKKND 357

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  +     +Y +L     +V  DD  E   S+F   DL+G P Q+I+G+K  S  + E 
Sbjct: 358 ETLKKKTSDVYEKLLNNSFEVLLDDTDESPASKFKNFDLIGIPYQIIIGAK-QSGDEFEF 416

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K  L   +E ++L+ +IN     + N
Sbjct: 417 KE-LGEEKEIINLDIIINKLKKIYFN 441


>gi|262277283|ref|ZP_06055076.1| prolyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262224386|gb|EEY74845.1| prolyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 442

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 221/447 (49%), Positives = 307/447 (68%), Gaps = 6/447 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S YFLPIL+ENP +A+I SH+LMLR GMI Q + GIYSWLP+G K L N+  I+REE
Sbjct: 1   MKLSNYFLPILKENPSEAKIKSHQLMLRAGMIRQSASGIYSWLPMGFKVLKNIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GAIE+ +PT+QSAD+W ESGRYD YGKEMLR++DR+++ ++YGPT+EE++T IFR 
Sbjct: 61  QNKAGAIELLMPTIQSADIWKESGRYDDYGKEMLRISDRHERDLLYGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+NLP   Y IQ KFRDE+RPRFGVMR REFLMKD YSFD+    ++ SY KMF+S
Sbjct: 121 NIKSYKNLPLMLYHIQWKFRDEIRPRFGVMRCREFLMKDTYSFDVDKATAEFSYKKMFLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F +  L +IPM+AE+GPIGGDLSHEFI+LADTGE++VF  K+ +D  +   +    
Sbjct: 181 YLKTFQKFELNAIPMKAETGPIGGDLSHEFIILADTGESEVFLDKNLLDIDVNEVDYSEK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
           +I   N I+E+++  Y+AT + H+   F++    + ++  +GIE+GHIFYFG KYS  M 
Sbjct: 241 NI---NEIIERFSKFYSATDEKHDVNEFENNVSKENQLRTKGIEIGHIFYFGDKYSKSMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A     +GK+   QMGSYGIG  R+ AA+IE+ ++G  + WP +V PFK+++IN+  +  
Sbjct: 298 ALVNNKEGKNINPQMGSYGIGVSRLPAAIIEAKYNGTFMKWPKTVTPFKVAIINLGKNGD 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +IY  L     D   DD  E   S+F   DL+G P Q+I+GSK +   + E K
Sbjct: 358 EADQKSNEIYQNLINANLDPILDDTSENPSSKFKNFDLIGIPYQIIIGSK-LKKDEFEFK 416

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
             +   +  +S EEVIN     ++ ++
Sbjct: 417 E-IGEEKLILSKEEVINRLKEIYNIDK 442


>gi|73666953|ref|YP_302969.1| prolyl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|114152194|sp|Q3YSD4|SYP_EHRCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72394094|gb|AAZ68371.1| Prolyl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 424

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/440 (44%), Positives = 281/440 (63%), Gaps = 16/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+E   D  + SHK  +R G+I Q + GIY+WLPLG + L N+  I+REE
Sbjct: 1   MRLSNYYIPTLKETSADVSVVSHKYSIRAGLIKQIASGIYTWLPLGLRVLRNIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q A LW ESGRYD YG EMLR+ DRN + M++GPTHEEV+TD  R+
Sbjct: 61  MNKSGALEVLMPLIQPASLWKESGRYDDYGSEMLRITDRNQREMLFGPTHEEVITDTLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S++NLP T YQIQ KFRDELRPR+G+MR REFLMKDAYSFD    G+  SYN MF +
Sbjct: 121 TLTSHKNLPITLYQIQWKFRDELRPRYGIMRCREFLMKDAYSFDKDLSGAILSYNLMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF  LGL  I ++AESGPIGG+LSHEF VLA++GE+ ++             + +  
Sbjct: 181 YIKIFKNLGLTPIAVKAESGPIGGNLSHEFHVLANSGESTLY------------YDQEII 228

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++++ ++I  +        +D  ++     +P N   +++GIE+GHIFY G KYS PM+A
Sbjct: 229 ELMNSDNIDIERIKNTYTAADDMHDPQTCPIPPNNIKTSKGIEIGHIFYLGDKYSKPMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +     +QMG YGIG  R+VAA+IE  HD KGI WP+ ++PFK SL+N+ + +  
Sbjct: 289 NFCD-NNDSKPLQMGCYGIGISRLVAAIIEVFHDNKGITWPEEISPFKFSLVNLYSSNDK 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E ++ +L     DV +DD  +  G +    DLLG P Q+I+G   V    +E+++
Sbjct: 348 CIKVAENLHMQLHN---DVLYDDTDDSPGIKLTRTDLLGMPWQIIIGKSTVEQDLIEVRN 404

Query: 421 RLTGIREDMSLEEVINYASH 440
           R    +  +S+E+ +     
Sbjct: 405 RSNKDKFLISVEQFLKKFKK 424


>gi|222475082|ref|YP_002563497.1| prolyl-tRNA synthetase (proS) [Anaplasma marginale str. Florida]
 gi|254994925|ref|ZP_05277115.1| prolyl-tRNA synthetase [Anaplasma marginale str. Mississippi]
 gi|255003060|ref|ZP_05278024.1| prolyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico]
 gi|222419218|gb|ACM49241.1| prolyl-tRNA synthetase (proS) [Anaplasma marginale str. Florida]
          Length = 425

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 201/440 (45%), Positives = 279/440 (63%), Gaps = 15/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIEHIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG+  SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGAMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D           
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDLSKND------ 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 235 -----YCTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKNGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALAD---SSLYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVINYASH 440
           R  G  E  +++ +I     
Sbjct: 406 RANGATEKCTVDALIARMQA 425


>gi|56416716|ref|YP_153790.1| prolyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|81821288|sp|Q5PAZ5|SYP_ANAMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56387948|gb|AAV86535.1| prolyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 425

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 202/440 (45%), Positives = 278/440 (63%), Gaps = 15/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG   SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGVMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D           
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDLSKND------ 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 235 -----YCTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DG   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKDGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALAD---SSLYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVINYASH 440
           R  G  E  +++ +I     
Sbjct: 406 RANGATERCTVDALIARMQA 425


>gi|255004184|ref|ZP_05278985.1| prolyl-tRNA synthetase [Anaplasma marginale str. Virginia]
          Length = 425

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 201/440 (45%), Positives = 278/440 (63%), Gaps = 15/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIEHIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG   SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGVMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D           
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDLSKND------ 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 235 -----YCTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKNGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALAD---SSLYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVINYASH 440
           R  G  E  +++ +I     
Sbjct: 406 RANGATEKCTVDALIARMQA 425


>gi|58617074|ref|YP_196273.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|81311371|sp|Q5FHL5|SYP_EHRRG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58416686|emb|CAI27799.1| Prolyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 426

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 203/440 (46%), Positives = 289/440 (65%), Gaps = 15/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E P D  + SH   LR+G+I Q + GIY+WLPLG K L N+  +I+EE
Sbjct: 1   MRLSKYYIPTLKETPTDVSVTSHVYSLRSGLIRQVASGIYAWLPLGLKVLKNIENVIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G +E+ +P +Q A LW ESGRY+ YG EMLR+ DRN++ M++GPTHEEV+TD+ R+
Sbjct: 61  MNKSGILEVLMPLIQPASLWQESGRYNDYGSEMLRIKDRNNREMVFGPTHEEVVTDLLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQ+Q KFRDELRPR+G+MR REFLMKDAYSFD     +  SYN MF  
Sbjct: 121 TLTSYKNLPLILYQVQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFNSAIESYNLMFKV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF RLGL  I ++A+SGPIGG+LSHEF +LA++GE+ ++  +D ++           
Sbjct: 181 YIQIFRRLGLTPIAVKADSGPIGGNLSHEFHILANSGESTLYYDQDIINL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I + N  +E+    Y A  D+HN +    +P +   +++GIE+GHIFY G KYS  M+A
Sbjct: 231 -INNDNIDIEKIKNTYTAADDLHNSETC-PIPASNIKTSKGIEIGHIFYLGDKYSKTMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   + +   + MG YGIG  R+V A+IE SHD  GIIWP+ +APFK SL+N+ + ++ 
Sbjct: 289 AFS-QNNETQLLHMGCYGIGVSRLVGAIIEVSHDNNGIIWPEEIAPFKFSLVNVFSANKE 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR+  E +YA+L     DV +DD  +  G +F+  DLLG P QVI+G   +    +E++ 
Sbjct: 348 CRNISENLYAKLDSN--DVLYDDTEDSTGIKFSRMDLLGMPWQVIIGKTTIEHGLIEVRQ 405

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +     MS E+ +N    
Sbjct: 406 RSSKKSLLMSTEQFLNNFKK 425


>gi|78777058|ref|YP_393373.1| prolyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|114152275|sp|Q30S93|SYP_SULDN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78497598|gb|ABB44138.1| Prolyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 435

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 157/443 (35%), Positives = 236/443 (53%), Gaps = 8/443 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRS+ F+P  +E P DA + SHK ++R G I+Q   G+Y++LPLG+  L+ + A+++EE
Sbjct: 1   MRRSRAFIPTAKEAPSDATLPSHKFLVRGGFINQQGAGLYNFLPLGKIVLEKIRAVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +    LW  SGR ++ GKEMLR+ DR+    +  PT+EE M ++ ++
Sbjct: 61  LDLAGCNEVQLSFVTPIGLWERSGRSEAMGKEMLRINDRHQNEFVLSPTNEEAMVELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  KFRDE RPR+G++R REFLMKD YSF  + +     ++ M  +
Sbjct: 121 RVTSYKDLPLNLYQINTKFRDEARPRYGLLRGREFLMKDGYSFHSSTQDMIREFDLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    + A+SG IGGD S EF VLAD+GE  +   +            +F 
Sbjct: 181 YKKIFTRLGLDFRVVAADSGAIGGDGSKEFHVLADSGEDTLIVCQSCNYGANIETIDEFK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D I   +                +               +GIEVGHIF  GTKYS  + A
Sbjct: 241 DKIDELNEKSYEELKELKIDQKCS-------CGANLHFKKGIEVGHIFQLGTKYSAALEA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G+    +M ++GIG  R+VAA+IE +HD  G IW    AP+ ++++     D+ 
Sbjct: 294 NFSDENGRSKPFEMATFGIGVSRLVAAIIEQNHDESGCIWTKESAPYIVNIMVSNVKDEA 353

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E +YA+L     DV +DD  E+ G +   A+L+GFP  +I+G K +    V+I  
Sbjct: 354 QMSLGEDLYAKLRAAKVDVIFDDTKERFGFKMKDAELIGFPYTLIIG-KELEGGLVQIFD 412

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T     +      +       
Sbjct: 413 RKTKESISVESSSAYDKIMELIK 435


>gi|57239072|ref|YP_180208.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579015|ref|YP_197227.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81819260|sp|Q5HBI6|SYP_EHRRW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57161151|emb|CAH58064.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417641|emb|CAI26845.1| Prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 426

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 203/440 (46%), Positives = 287/440 (65%), Gaps = 15/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E P D  + SH   LR+G+I Q + GIY+WLPLG K L N+  +I+EE
Sbjct: 1   MRLSKYYIPTLKETPADVSVTSHVYSLRSGLIRQVASGIYAWLPLGLKVLKNIENVIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G +E+ +P +Q A LW ESGRY+ YG EMLR+ DRN++ M++GPTHEEV+TD+ R+
Sbjct: 61  MNKSGILEVLMPLIQPASLWQESGRYNDYGSEMLRIKDRNNREMVFGPTHEEVVTDLLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQ+Q KFRDELRPR+G+MR REFLMKDAYSFD     +  SYN MF  
Sbjct: 121 TLTSYKNLPLILYQVQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFNSAIESYNLMFKV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF RLGL  I ++A+SGPIGG+LSHEF +LA++GE+ ++  +D ++           
Sbjct: 181 YIQIFRRLGLTPIAVKADSGPIGGNLSHEFHILANSGESTLYYDQDIINL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I + N  +E+    Y A  D+HN +    +P +    ++GIE+GHIFY G KYS  M+A
Sbjct: 231 -INNDNIDIEKIKNTYTAADDLHNSETC-PIPASNIKKSKGIEIGHIFYLGDKYSKTMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   + +   + MG YGIG  R+V A+IE SHD  GIIWP+ +APFK SL+N+ + ++ 
Sbjct: 289 VFS-QNNETQLLHMGCYGIGVSRLVGAIIEVSHDNNGIIWPEEIAPFKFSLVNVFSANKE 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E +YA+L     DV +DD  +  G +FA  DLLG P QVI+G   +    +E++ 
Sbjct: 348 CHNISENLYAKLGSN--DVLYDDTEDSTGIKFARMDLLGMPWQVIIGKTTIEHGLIEVRQ 405

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +     MS E+ +N    
Sbjct: 406 RSSKKSLLMSTEQFLNNFKK 425


>gi|254458440|ref|ZP_05071865.1| prolyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207084748|gb|EDZ62035.1| prolyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 434

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/442 (35%), Positives = 236/442 (53%), Gaps = 8/442 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRS+ F+P  +E P DA + SH+ ++R G I+Q   G+Y++LPLG+  L+ +  I++EE
Sbjct: 1   MRRSRAFIPTTKEVPNDATLPSHQFLVRGGFINQQGAGLYNFLPLGKIVLEKIRTIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +    LW  SGR D+ GKEMLR+ DR+    +  PT+EE M ++ ++
Sbjct: 61  LDMAGCNEVQLSFVTPIGLWDRSGRADAMGKEMLRIQDRHQNDFVLSPTNEEAMVELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  KFRDE RPR+G++R REFLMKD YSF  + E     ++ M  +
Sbjct: 121 RVTSYKDLPLNLYQINTKFRDEARPRYGLLRGREFLMKDGYSFHASTEDMIREFDLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    ++A+SG IGG+ S EF VLAD+GE  +   +            D  
Sbjct: 181 YKKIFTRLGLDFRVVQADSGAIGGEGSKEFHVLADSGEDTIIVCESCDYGANIETIFD-- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                N                  E              +GIEVGHIF  GTKYS  + A
Sbjct: 239 -----NEEEVDALNEKTYEELQTKEISEKCSCGGNLSFKKGIEVGHIFQLGTKYSSALEA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +GK    +M ++GIG  R+VA+VIE +HD  G IW    AP+ I+++     D+ 
Sbjct: 294 NFSDENGKPRPFEMATFGIGVSRLVASVIEQNHDENGCIWTKETAPYTINIMVSNIKDET 353

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E++Y +L     +  +DD  E+ G +   A+L+GFP  VI+G K + +  V++  
Sbjct: 354 QMTLGEELYLKLLGENVEAMFDDRKERFGFKMKDAELIGFPYTVIIG-KELDNGLVQVYD 412

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R T  +  +   ++  +     
Sbjct: 413 RKTQEKISVKTGDIYKHIMELI 434


>gi|251772092|gb|EES52662.1| prolyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 429

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 178/449 (39%), Positives = 253/449 (56%), Gaps = 28/449 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++       E+P +AE  SH+LMLR G + + + G+Y +LP G + L  V  I+REE
Sbjct: 1   MRTTRLPYVTFHEDPAEAETVSHRLMLRGGYVRKVAGGLYDFLPFGARVLRRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A++W ++GR++ YGKE+ RL DR+D++   GPTHEEV+T++   
Sbjct: 61  MDRAGAFEILMPALQPAEMWEKTGRWEKYGKELFRLTDRHDRSFALGPTHEEVVTELASG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + E     Y  M  +
Sbjct: 121 LLNSYRQLPVTLYQIQTKFRDEMRPRFGLMRGREFVMKDAYSFARSKEEGAECYRIMQEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A++G IGG  SHEF+VLA +GE  V                   
Sbjct: 181 YFRIFARLGLSVRMVEADTGNIGGYSSHEFMVLAPSGEDTVV------------------ 222

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                       +  YA+  ++        L +        IEVGH+F  G +YS PM A
Sbjct: 223 ---------FCGSCRYASNVELAGAATHCPLCQAPLERTTAIEVGHVFDLGDRYSAPMEA 273

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DG++    MG YGIG  R++AA IE SHD  GIIWP ++APF ++++ +   D  
Sbjct: 274 GFLDPDGRETLFHMGCYGIGVSRLLAAAIEQSHDDAGIIWPTAMAPFAVAVLPLGGRDAE 333

Query: 361 CRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +I   L +    +V  DD   + G +FA ADL GFP+QVI+G K + +++ EIK
Sbjct: 334 LSEKALRIAGLLEERFPEEVLVDDRDLRAGVKFADADLCGFPIQVILGEKGLRENRAEIK 393

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R +G R  + L  +  + +    +   V
Sbjct: 394 VRSSGERNTVDLSALSEWIADHLGSGGAV 422


>gi|88657672|ref|YP_507541.1| prolyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|114152195|sp|Q2GG92|SYP_EHRCR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88599129|gb|ABD44598.1| prolyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 424

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 197/440 (44%), Positives = 281/440 (63%), Gaps = 16/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+E   D  + SHK  +R G+I Q + GIY+WLPLG K L N+  I+REE
Sbjct: 1   MRLSDYYVPTLKETSADISVISHKYSIRAGLIKQIASGIYTWLPLGLKVLKNIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G++E+ +P +Q A LW ESGRYD YG EMLR+ DRN + M++GPTHEEV+TDI R+
Sbjct: 61  MNKSGSLEILMPLIQPASLWKESGRYDDYGSEMLRITDRNQREMLFGPTHEEVITDILRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              S+++LP   YQIQ KFRDELRPR+G+MR REFLMKDAYSFD    G+  SYN MF +
Sbjct: 121 TPVSHKDLPLILYQIQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFSGAISSYNLMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF +LGL  I ++A+SGPIGG+LSHEF VLA++GE+ ++             + D  
Sbjct: 181 YIKIFQKLGLTPIAVKADSGPIGGNLSHEFHVLANSGESTLY------------YDQDII 228

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++++  SI  +        +D  ++     +  +K   ++GIE+GHIF+ G KYS PM+A
Sbjct: 229 ELMNSESIDVEKIKNTYTAADDMHDPQACPISSDKVKISKGIEIGHIFHLGDKYSKPMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F  ++  +  +QMG YGIG  R+VAA+IE  HD KGIIWP++VAPFK SL+N+   +  
Sbjct: 289 NFCDSNN-NKLLQMGCYGIGVSRLVAAIIEVFHDNKGIIWPETVAPFKFSLVNLYTSNDK 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E ++ +L             +  G + A  DLLG P QVI+G   V    +E+++
Sbjct: 348 CKKVAENLHMQLYDDVLYDDT---DDSPGIKLARTDLLGMPWQVIIGKSTVEQDLIEVRN 404

Query: 421 RLTGIREDMSLEEVINYASH 440
           RLT  +  +S E+ +N    
Sbjct: 405 RLTKDKVLISTEQFLNKLKK 424


>gi|269958866|ref|YP_003328655.1| prolyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848697|gb|ACZ49341.1| prolyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 425

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 198/437 (45%), Positives = 283/437 (64%), Gaps = 15/437 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASH+  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVIVASHRYSLRAGLVRQNASGLYTWLPLGLKVLRGIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q A+LW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPAELWRESQRYDSYGLEMLRMQDRSGREMVFGPTHEESISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP + YQ+Q KFRDELRPR G+MR REFLMKDAYSFD+  E +  SY+ +F +
Sbjct: 121 SLKSYRDLPISLYQMQWKFRDELRPRHGIMRCREFLMKDAYSFDVDFESAMRSYSNVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF RLGL +I  +A+SG IGG  SHEF VL  TGE+ V+  +  +D    S      
Sbjct: 181 YLRIFRRLGLVAIAAKADSGAIGGSTSHEFHVLVPTGESTVYHDRKALDISRKS------ 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  +E  T  YAAT D H+ +     P++ +VS +GIEV H+FY G +YS PM+ 
Sbjct: 235 -----DCSMEDVTGVYAATEDAHDPQNCGVHPDDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F    G  +   MG YGIG  R+VAA+IE  HD  GI WP+S+APF++ ++N+ A +  
Sbjct: 289 KFHDKSGNSNNALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFRVGIVNLLATNGD 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IY  L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYTALAD---SSLYDDSADSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVINY 437
           R +G+ E  ++  +I  
Sbjct: 406 RASGVTEKCTVGSLIAR 422


>gi|218661849|ref|ZP_03517779.1| prolyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 354

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 232/354 (65%), Positives = 293/354 (82%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS +KS
Sbjct: 1   GAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRSSVKS 60

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +YLR 
Sbjct: 61  YKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAAYLRT 120

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E TDFD +  
Sbjct: 121 FERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDERTDFDSVEG 180

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L +I E+WT+ YAATS++H+E  F+++PE+ R+SARGIEVGHIFYFGTKYS  M A  +G
Sbjct: 181 LQAIFEKWTSLYAATSEMHDEAAFNAVPESDRLSARGIEVGHIFYFGTKYSETMGAKVQG 240

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ C D 
Sbjct: 241 PDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQACDDT 300

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+
Sbjct: 301 CELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEV 354


>gi|88607069|ref|YP_505231.1| prolyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|114152168|sp|Q2GK70|SYP_ANAPZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88598132|gb|ABD43602.1| prolyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 426

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 196/440 (44%), Positives = 280/440 (63%), Gaps = 16/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P ++    D   ASHK  +R G++ Q + GIY+ LPLG   L  V  IIREE
Sbjct: 1   MRLSEFYSPTVKNVSSDVVSASHKYSIRAGIVSQTASGIYTLLPLGLMVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +PT+Q ADLW ES RYDSYG+E++R+ DR  + M+ GPTHEEV+TD+ RS
Sbjct: 61  INAVGFSEILMPTMQPADLWKESQRYDSYGQELIRIHDRGGREMVLGPTHEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G++RSREFLM DAYSFD   E +  +Y+ +F +
Sbjct: 121 SLKSYRDLPVNLYQIQWKFRDELRPRNGILRSREFLMMDAYSFDTDFEKAMKTYDAVFRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F R+ L++I ++A+ G IGG +SHEF VL  TGE+ V+  +  ++           
Sbjct: 181 YRKAFKRMNLQTIALKADMGAIGGSVSHEFHVLTPTGESTVYYDERALELS--------- 231

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  +E+    YAAT D+H+EK     PE+   +ARGIEVGHIFY   +YS  M+ 
Sbjct: 232 --EMNDYGIEELKEVYAATDDMHDEKSCGIAPED-LKTARGIEVGHIFYLDDRYSRTMNV 288

Query: 301 TFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F   DG    +V+MG YGIG  R++ A+IE  HD  GI WP SVAPFK+ ++N+ + ++
Sbjct: 289 KFCNTDGHSGTHVKMGCYGIGISRLIGALIEVFHDDAGIKWPLSVAPFKVGIVNLFSKNE 348

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C+   E+I++ L     D  +DD  +  G + +  DL+G P QVIVG+ F+ D  +E+K
Sbjct: 349 ECKRVSERIHSVLPN---DSLYDDRDDTPGVKLSRMDLIGLPWQVIVGNSFIKDGVLELK 405

Query: 420 HRLTGIREDMSLEEVINYAS 439
           +R TG  E +S+++V++  S
Sbjct: 406 NRATGDIELLSVDDVVSRIS 425


>gi|254455357|ref|ZP_05068786.1| prolyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082359|gb|EDZ59785.1| prolyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 444

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 213/449 (47%), Positives = 297/449 (66%), Gaps = 9/449 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MLLSKSFIPILKNNPSEAKIKSHQLMLRVGMIKQASAGIYSWLPLGFKVMKKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q++ GA E+ +PT+QS+++W ESGRYD YG+EMLR+ DR ++ M+YGPT+EE +T+IFRS
Sbjct: 61  QDKIGAQEILMPTIQSSEIWKESGRYDDYGEEMLRIKDRQNREMLYGPTNEEQVTEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+T E +  SYNK F+S
Sbjct: 121 SLKSYKSLPQLLYHIQWKFRDEIRPRFGIMRGREFYMKDAYSFDITDEDAFFSYNKFFLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D    + +    
Sbjct: 181 YLRTFKRLSLTAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRIFDL---TNDDTEL 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
           +  SL  + +++   Y+ T +  N+  F+ +   + R+  +GIEVGHIFYFG KYS  M 
Sbjct: 238 EKSSLEQMRKRYEKFYSVTDEKFNKVEFEKMVSEENRLITKGIEVGHIFYFGDKYSKAMD 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--WPDSVAPFKISLIN-IKA 356
                  GK  +V+MGSYGIG  R+V A+IE+ +D +  I  WP SVAP+ I+LI  I  
Sbjct: 298 TAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDDENEIMKWPLSVAPYDIALIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    +   KI + L +   +   DD  E   S+    +L+G P Q+I+G K      +
Sbjct: 358 NDNSALEKANKINSELIRNNIEAIIDDTDENYSSKIKKMNLIGAPYQIIIGKKS-DGDLL 416

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E K    G  +++SLE++I   + + ++N
Sbjct: 417 EFKE-PGGETQNLSLEKIIEIITKQKASN 444


>gi|91761979|ref|ZP_01263944.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717781|gb|EAS84431.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 444

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 210/445 (47%), Positives = 288/445 (64%), Gaps = 9/445 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MYISKSFIPILKNNPSEAKIKSHQLMLRVGMIKQSSAGIYSWLPLGFKVMKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN  GA E+ +PT+Q +D+W ESGRYD YG EMLR+ DR  + M+YGPT+EE++TDIFRS
Sbjct: 61  QNTIGAQEILMPTIQPSDIWKESGRYDDYGDEMLRIKDRQGREMLYGPTNEELVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+  E +  SYNK F S
Sbjct: 121 SVKSYKSLPQLLYHIQWKFRDEVRPRFGIMRGREFYMKDAYSFDVNDEDATFSYNKFFFS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D           
Sbjct: 181 YLKTFKRLELSAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRVFDL---GSEGTVL 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
           D  SL  + +++   YA   +  N+  F+     + R+  +GIEVGHIFYFG KYS  ++
Sbjct: 238 DRQSLQDLRKKYEQYYAVADEKFNKNEFEEKVSEENRLITKGIEVGHIFYFGDKYSKALN 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--WPDSVAPFKISLIN-IKA 356
           A      GK  +V+MGSYGIG  R+V A+IE+ +D K  I  WP SVAP+++++I  I  
Sbjct: 298 AAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDQKDEIMKWPFSVAPYELAIIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    D   K++        D   DDM E + S+    +L+G P Q+I+G K   D+ +
Sbjct: 358 NDTSALDKANKLFKHFESKNIDTIIDDMDENLSSKIKKFNLIGVPYQIILG-KNSEDNLL 416

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           E K  +    + ++L+++    + +
Sbjct: 417 EFKE-IGKDPKSLTLDQITQILTEQ 440


>gi|71083600|ref|YP_266319.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
 gi|114152227|sp|Q4FM73|SYP_PELUB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71062713|gb|AAZ21716.1| proline-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 444

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 210/445 (47%), Positives = 289/445 (64%), Gaps = 9/445 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MYISKSFIPILKNNPSEAKIKSHQLMLRVGMIKQSSAGIYSWLPLGFKVMKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GA E+ +PT+Q +D+W ESGRYD YG EMLR+ DR  + M+YGPT+EE++TDIFRS
Sbjct: 61  QNKIGAQEILMPTIQPSDIWKESGRYDDYGDEMLRIKDRQGREMLYGPTNEELVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+  E +  SYNK F S
Sbjct: 121 SVKSYKSLPQLLYHIQWKFRDEVRPRFGIMRGREFYMKDAYSFDVNDEDATFSYNKFFFS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D           
Sbjct: 181 YLKTFKRLELSAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRVFDL---GSEGTVL 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
           D  SL  + +++   YA   +  N+  F+     + R+  +GIEVGHIFYFG KYS  ++
Sbjct: 238 DRQSLQDLRKKYEQYYAVADEKFNKNEFEEKVSEENRLITKGIEVGHIFYFGDKYSKALN 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--WPDSVAPFKISLIN-IKA 356
           A      GK  +V+MGSYGIG  R+V A+IE+ +D K  I  WP SVAP+++++I  I  
Sbjct: 298 AAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDQKDEIMKWPFSVAPYELAIIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    D   K++        D   DDM E + S+    +L+G P Q+I+G K   D+ +
Sbjct: 358 NDTSALDKANKLFKHFESKNIDTIIDDMDENLSSKIKKFNLIGVPYQIILG-KNSEDNLL 416

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           E K  +    + ++L+++    + +
Sbjct: 417 EFKE-IGKDPKSLTLDQITQILTEQ 440


>gi|124515073|gb|EAY56584.1| Prolyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 422

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 182/443 (41%), Positives = 256/443 (57%), Gaps = 27/443 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L E P +AE+ SH+LMLR G + + + G+YS+LP+  +AL  V +IIREE
Sbjct: 1   MKASCDPVQTLHEEPAEAEVVSHRLMLRAGFVRKLAGGVYSYLPMAVRALRKVESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P LQ +DLW ++GR+ +YG E+ RL DR+++A   GPTHEEV+TD+   
Sbjct: 61  MNSAGGQEVLLPALQPSDLWEKTGRWQAYGPELFRLHDRHERAFALGPTHEEVITDLVSQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LPF  YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E ++  Y +M  +
Sbjct: 121 IIRSYRQLPFLAYQIQTKFRDERRPRFGILRGREFIMKDAYSFSASEENARQIYARMQEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A+SG IGG+LSHEF+V+AD+GE  V   +               
Sbjct: 181 YGRIFLRLGLDHRMVEADSGLIGGNLSHEFMVMADSGEDTVVTCEKCSW----------- 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A+  +   +     +  +   S   IEVGH+FY G KYS PM  
Sbjct: 230 ----------------ASNIEKAPDARVCPVCGSALTSRTAIEVGHVFYLGHKYSAPMET 273

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF  + GK+    MG YGIG  R++AA IE SHD KGIIWP ++AP++ +++ +      
Sbjct: 274 TFLDSAGKEVPFFMGCYGIGVSRILAATIEQSHDDKGIIWPVAMAPYRTAVLPLGPGMSE 333

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R+    + +  S    + ++DD   + G +F  ADL GFP QVI+G + V     E+K 
Sbjct: 334 RREVLSLLESLESLWPGEAYFDDREIRPGMKFQDADLRGFPFQVILGDRHVDKGNGEVKI 393

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG R  + L ++    S R  
Sbjct: 394 RRTGERLVLPLRDIPALLSARVQ 416


>gi|88608761|ref|YP_506256.1| prolyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|114152220|sp|Q2GE40|SYP_NEOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88600930|gb|ABD46398.1| prolyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 436

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 198/440 (45%), Positives = 281/440 (63%), Gaps = 11/440 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+Y+LP+++    + ++ SHK  LR G++ Q   G+YSWLPLG K L N+ ++IR+E 
Sbjct: 6   RVSEYYLPLMKNVSGEVKLRSHKYSLRAGLVKQCGAGLYSWLPLGLKVLRNIESVIRQEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P +Q A LW ESGRY  YGKE+L+  DR+D  +++GPT+EEV+T I R  
Sbjct: 66  DSMGMHEMLMPCIQLAKLWEESGRYSDYGKELLKFKDRHDNELLFGPTNEEVITAIVRDD 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY+ LP   Y IQ KFRDE+RPRFG+MR+REFLMKDAYSFD+  + ++ SYNK++ SY
Sbjct: 126 LASYKQLPKILYHIQWKFRDEIRPRFGLMRAREFLMKDAYSFDVDQQSARISYNKVYQSY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIV-LADTGETQVFCSKDFMDFPIPSENTDFD 240
           LRIF RLGL  IP RA +G IGG L+HEF +   + GE ++F  ++  +        D  
Sbjct: 186 LRIFKRLGLNPIPCRANAGVIGGSLNHEFHITTTEGGEGKIFYPEEMGELVDEFCKIDPS 245

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +  +++ + E+    +  T + ++  + +   +N+  +A+GIEVGHIF FG KYS PM A
Sbjct: 246 NEHAVSVMTEKLQELFCFTEECNSSGIGN---DNRICTAQGIEVGHIFLFGEKYSAPMQA 302

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G DGK     MGSYGIG  R++AA+IE   D KGIIWP+S+APFKI LIN+      
Sbjct: 303 RFSGRDGKKKNFYMGSYGIGISRLLAAIIEVHSDDKGIIWPESIAPFKIGLINLHGESCG 362

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E+I+++L      V +DD  +  G +FA  DL+G P Q+IVG        +E+K+
Sbjct: 363 F---AEEIFSKLDS----VIYDDTADSQGVKFARMDLIGVPFQIIVGKNGPIHGTIELKY 415

Query: 421 RLTGIREDMSLEEVINYASH 440
           RL   RE  SL E+++  SH
Sbjct: 416 RLDSKRESRSLNELVSLFSH 435


>gi|206603805|gb|EDZ40285.1| Prolyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 422

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 183/443 (41%), Positives = 259/443 (58%), Gaps = 27/443 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L E P +AE+ SH+LMLR G++ + + G+YS+LP+  +AL  V AIIREE
Sbjct: 1   MKASCDPVQTLHEEPAEAEVVSHRLMLRAGLVRKLAGGVYSYLPMAVRALRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P LQ +DLW ++GR+ +YG E+ RL DR+++A   GPTHEEV+TD+   
Sbjct: 61  MNSAGGQEVLLPALQPSDLWEKTGRWQAYGPELFRLHDRHERAFALGPTHEEVITDLVSQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LPF  YQIQ KFRDE RPRFG++R REF+MKDAYSF ++ E ++  Y +M  +
Sbjct: 121 VIRSYRQLPFIAYQIQTKFRDERRPRFGILRGREFIMKDAYSFSVSEENARQIYTRMQEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A+SG IGG+LSHEF+V+AD+GE  V   +               
Sbjct: 181 YGRIFLRLGLDHRMVEADSGLIGGNLSHEFMVMADSGEDTVVTCEKCSW----------- 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A+  +   +     +  +   S   IEVGH+FY G KYS PM  
Sbjct: 230 ----------------ASNIEKAPDARVCPVCGSVLESRTAIEVGHVFYLGHKYSTPMET 273

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF  + GK+    MG YGIG  R++AA IE SHD KGIIWP ++AP++ +++ +      
Sbjct: 274 TFLDSAGKEVPFFMGCYGIGVSRILAATIEQSHDDKGIIWPVAMAPYRTAVLPLGPGMSE 333

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R+    + +  S    + ++DD   + G +F  ADL GFP QVI+G + V     E+K 
Sbjct: 334 RREVLSLLESLESLWPGESYFDDREIRPGMKFQDADLRGFPFQVILGDRHVDKGDGEVKI 393

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG R  + L+++    S R  
Sbjct: 394 RRTGERLVLPLKDIPALLSARVQ 416


>gi|254796740|ref|YP_003081576.1| prolyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589987|gb|ACT69349.1| prolyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 436

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 197/436 (45%), Positives = 279/436 (63%), Gaps = 11/436 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+Y+LP+++    + ++ SHK  LR G++ Q   G+YSWLPLG K L N+ +IIR+E 
Sbjct: 6   RVSEYYLPLMKNVSGEVKLRSHKYSLRAGLVKQCGAGLYSWLPLGLKVLKNIESIIRQEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P +Q A LW ESGRY  YG+E+L+  DR+D  +++GPT+EEV+T I R  
Sbjct: 66  DSMGMHEMLMPCIQLAKLWEESGRYSDYGRELLKFKDRHDNELLFGPTNEEVITAIVRDD 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY+ LP   Y IQ KFRDE+RPRFG+MR+REFLMKDAYSFD+  + ++ SYNK++ SY
Sbjct: 126 LASYKQLPKILYHIQWKFRDEIRPRFGLMRAREFLMKDAYSFDVDQQSARISYNKVYQSY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIV-LADTGETQVFCSKDFMDFPIPSENTDFD 240
           LRIF RLGL  IP RA +G IGG L+HEF +   + GE ++F  ++  +        D  
Sbjct: 186 LRIFKRLGLNPIPCRANAGVIGGSLNHEFHITTTEGGEGKIFYPEEIGELVDEFCKIDPS 245

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +++ +  +       T + ++  + D   +N+  +A+GIEVGHIF FG KYS PM A
Sbjct: 246 DEHAVSVMTAKLQELSCFTEECNSSSIED---DNRICAAQGIEVGHIFLFGEKYSAPMQA 302

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DG      MGSYGIG  R++AA+IE   D KGIIWP+S+APFK+ LIN+  H++ 
Sbjct: 303 RFSDRDGMKKNFYMGSYGIGISRLLAAIIEVYSDDKGIIWPESIAPFKVGLINL--HEES 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E+I+++L      V +DD  +  G +FA  DL+G P Q+IVG   + D  VE+K 
Sbjct: 361 CG-LAEEIFSKLDS----VIYDDTTDSQGVKFARMDLIGVPFQIIVGKNAIIDGTVELKC 415

Query: 421 RLTGIREDMSLEEVIN 436
           RL   RE  +  E+I+
Sbjct: 416 RLDSKRESCNFNELIS 431


>gi|196019376|ref|XP_002118967.1| hypothetical protein TRIADDRAFT_9363 [Trichoplax adhaerens]
 gi|190577501|gb|EDV18547.1| hypothetical protein TRIADDRAFT_9363 [Trichoplax adhaerens]
          Length = 408

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/423 (41%), Positives = 268/423 (63%), Gaps = 19/423 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y LP  ++   +A++ SHKLML++GMI Q S G+YSWLPLG   L+ +  +IR E
Sbjct: 1   MRLSNYLLPTTKDISSEAKLMSHKLMLKSGMIKQSSSGVYSWLPLGLNVLNKLANLIRVE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDI 117
            N+    E+ +P+LQ   +W +SGR         ++  + D+   A +  P+ EE + ++
Sbjct: 61  LNKINCHEIVLPSLQLLSIWEKSGRAVEDSDMKSQIFHIKDQKQTAYVLPPSGEEAVAEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F+S + SY+++    YQI  KFRDE+RPR GVMR++EFLMKDAYSFD+  E +  SY K+
Sbjct: 121 FKSSVHSYKDVSKILYQITWKFRDEIRPRHGVMRAKEFLMKDAYSFDVNKEKALISYEKI 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-GETQVFCSKDFMDFPIPSEN 236
           F +YL +F ++GL+ IP+ A +G +GG+ SHEF VL+D  GE+ ++  ++  ++      
Sbjct: 181 FKAYLEVFKKIGLRVIPVLAPTGAMGGNYSHEFHVLSDKNGESTIYYQEELNNY------ 234

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                +      ++ +   YA   + H     D     K + ++ IEVGH+FY GTKYS 
Sbjct: 235 -----LKDDEFSLKGYEKFYAKEEEKHVV---DDCKTLKIIKSKSIEVGHLFYLGTKYSK 286

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            ++ T++ ++G+  + +MG YGIG  R++AA+IES HD KGIIWPD+++PFK+++INIKA
Sbjct: 287 SLNCTYQDSNGELQFPEMGCYGIGVTRLIAAIIESCHDDKGIIWPDAISPFKLAIINIKA 346

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D VCR+  +K+YA LS    DV +DD  +  G +FA  DL+G  L++I+G K  ++ KV
Sbjct: 347 EDSVCREFSDKLYANLSGK-YDVLYDDTNKSPGKKFADMDLIGINLEIIIGPKHAANKKV 405

Query: 417 EIK 419
           E+K
Sbjct: 406 ELK 408


>gi|326426858|gb|EGD72428.1| prolyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 447

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/442 (32%), Positives = 235/442 (53%), Gaps = 23/442 (5%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           + F+P+L+E P+ A   SH+L+LR G I Q   G+Y+ LP+  + +  + +++R E N  
Sbjct: 11  RLFVPLLKEVPKHAVAHSHQLLLRGGYIWQAGSGLYALLPMANRVVQRLQSLVRAELNAI 70

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G+ E  +P +    LW +SGR+   G E+ RL DR   A     THEE +T +  S + S
Sbjct: 71  GSQECVLPAITDKHLWQQSGRWQEAGDELFRLEDRKGAAYCLAATHEETVTALVSSLVSS 130

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP   YQ+Q K+RDE+RPR+G++R REF+MKD Y+FD + + ++ +Y K+   Y RI
Sbjct: 131 HRSLPLYLYQMQPKYRDEMRPRYGLLRCREFMMKDMYTFDSSEQDARATYAKVVECYQRI 190

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             RLG+    ++A++G IGG LSHEF + A+ GE ++             +     D   
Sbjct: 191 LQRLGVPFAKVQADTGLIGGSLSHEFQIKAEIGEDELIFCDTCNQAANIEKIDGLIDACP 250

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S     +    + S                 +++GIEVGH F  GTKYS    A F  
Sbjct: 251 HASPSPSTSPRPPSASCSWT-------------TSKGIEVGHAFLLGTKYSTVFDAAFLD 297

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           AD +   + MG YG+G  R+++AV E+ HD +G+IWP ++APF +S+ ++   +    + 
Sbjct: 298 ADSQRQDIHMGCYGLGLTRMLSAVAEAQHDAEGLIWPIAMAPFVVSIASVGRMNTFKDEK 357

Query: 365 CEKIYA------RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           C  +Y        LS +   +  D        + A + ++G P  V+VG  +     +E+
Sbjct: 358 CRALYEVLNSRPELSDL---IVLDTRDMSPRHKLANSRMVGIPFTVLVGD-WFDSEHLEV 413

Query: 419 KHRLTGIREDMSLEEVINYASH 440
             R +  ++DMS+EE ++  S 
Sbjct: 414 YARTSHDKQDMSVEEFVSLLSS 435


>gi|45387545|ref|NP_991118.1| probable prolyl-tRNA synthetase, mitochondrial [Danio rerio]
 gi|41350986|gb|AAH65673.1| Prolyl-tRNA synthetase (mitochondrial) [Danio rerio]
          Length = 477

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/449 (33%), Positives = 232/449 (51%), Gaps = 37/449 (8%)

Query: 3   RSKYFLPI-LQE--NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            S+ F P  L+E  +  D    S +LM++TG+IH  + G + +LP+  ++L+ +  +I E
Sbjct: 49  VSRLFQPSNLREGQDGGDLTCRSQRLMVQTGLIHPSNPGCFYYLPVALRSLEKLVRLIDE 108

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E +  G  ++ +P L SA+LW +SGR++  GKEM RL DR++     GPTHEE +T++F 
Sbjct: 109 EMHAIGGQKVDMPALCSAELWKKSGRWELMGKEMFRLLDRHNGEYCLGPTHEEAVTELFA 168

Query: 120 SHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S    SY+ LP   YQ+  KFRDE +P+FG++R REF MKD YSFD+  E + H+YN + 
Sbjct: 169 SQTTMSYKKLPLLLYQVTRKFRDEQKPKFGLLRGREFYMKDMYSFDINEEAALHTYNSVC 228

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y RI  RL LK + ++A++G IGG LSHEF + AD GE ++                 
Sbjct: 229 QAYRRILDRLHLKWVQVQADTGNIGGTLSHEFQLPADIGEDKLL---------------- 272

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                    +           +    +         K   +RGIEVGH FY GTKYS   
Sbjct: 273 ---------VCGNCGFSANIETMEPGQAKCSQCQTGKLTESRGIEVGHTFYLGTKYSQAF 323

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A F  A       +MG +G+G  R++AA IE       I WP  +AP+++ ++  K   
Sbjct: 324 KALFVNASNVPAVAEMGCFGLGVTRILAASIEVMSTEDAIHWPGLIAPYQVCVLPPKKGS 383

Query: 359 ------QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV 411
                 Q   +  + +   L  +  +V  DD  +  IG +   A +LG+P  V+VG   +
Sbjct: 384 KAHEATQKAEELAQSLGNSLPNLRGEVVLDDRTQMTIGKRLKDAKILGYPFVVVVGQTAL 443

Query: 412 SD-SKVEIKHRLTGIREDMSLEEVINYAS 439
            D +  E+  + +G    +S + +++  S
Sbjct: 444 DDLASFEVVCQQSGETLFLSKDGLVDLLS 472


>gi|50751644|ref|XP_422493.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Gallus gallus]
          Length = 470

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/456 (33%), Positives = 230/456 (50%), Gaps = 44/456 (9%)

Query: 3   RSKYFLPI---------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P+          +    +    SH+LML+ G+IH  S G Y  LP   ++++ +
Sbjct: 37  LSQLFQPLNLQVGGAAGCEGQAAELGCRSHRLMLQGGLIHPASPGCYHLLPPAVRSMEKL 96

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I       G  ++++P+L SA+LW  SGR++  G E+ RLADR+ K    GPTHEE 
Sbjct: 97  IRLIDGAMRNIGGQKVNMPSLSSAELWRTSGRWEQMGPELFRLADRHGKEYCLGPTHEEA 156

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T++  +H   SYR LP   YQ+  KFRDE +PRFG++RSREF MKD Y+FD + E ++H
Sbjct: 157 VTELVAAHSNLSYRQLPLRLYQVTRKFRDEPKPRFGLLRSREFYMKDMYTFDASEEAARH 216

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F RLGL+ + +RA +G IGG  SHEF + AD GE ++           
Sbjct: 217 TYELVCTAYRSLFKRLGLRCVQVRAATGTIGGTASHEFQLPADIGEDRL----------- 265

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          ++       A    V  E+        K   +RGIEVGH FY GT
Sbjct: 266 ---------------VLCPAGHFAANVEMVDEEQTACPACGEKLTQSRGIEVGHTFYLGT 310

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F   + K    +MG YG+G  R++AA IE       I WP  +AP+++  I
Sbjct: 311 KYSSVHNAAFYTPENKLQLAEMGCYGLGVTRILAASIEVLSTEDSIRWPSLIAPYQVCFI 370

Query: 353 NIKAHDQVCRDAC------EKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K   +  R A       + +   L ++  DV  DD  +  IG +   A+ LG+P  V+
Sbjct: 371 PPKKGSREERGAALLEHLYDDVAEALPRLAGDVVLDDRTQMTIGKRLKDANKLGYPYVVV 430

Query: 406 VGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYASH 440
            G +   D  V E+  + +G    ++ E VI   S 
Sbjct: 431 AGRRVCEDPPVFEVWDQSSGTVLYLTKEGVIELLSK 466


>gi|115638543|ref|XP_783415.2| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) isoform 1 [Strongylocentrotus
           purpuratus]
 gi|115931464|ref|XP_001186319.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Strongylocentrotus
           purpuratus]
          Length = 569

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 151/454 (33%), Positives = 221/454 (48%), Gaps = 42/454 (9%)

Query: 2   RRSKYFLP--ILQE--NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           R SK + P  +L E     D +  SH+LM+  G+I Q S G +  LPL  +AL+ +  +I
Sbjct: 137 RVSKMYQPSFVLPEGSKVADVKCKSHRLMMEAGLIRQASPGTFHLLPLAMRALEKLIKVI 196

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
             E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     GPTHEE +TDI
Sbjct: 197 DTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCLGPTHEEAVTDI 256

Query: 118 FRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
                  S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD   EG++ +Y  
Sbjct: 257 VAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDSNLEGAEETYRS 316

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +Y RIF  L L  +     +G IGG  SHEF +L++ GE  V+              
Sbjct: 317 VCEAYQRIFSILDLPIVQAVGATGAIGGSFSHEFHLLSEIGEDHVYHCSRCGYAVNQETV 376

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                                            S P+      +GIEVGH F  GTKYS 
Sbjct: 377 EGVPSCPDHP-----------------------STPDCNMSLRQGIEVGHAFLLGTKYSK 413

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              A F   DGK    +MG YG+G  R++AA IE     K I WP  +AP+++ +++ K 
Sbjct: 414 TFKADFYDKDGKPRLAEMGCYGLGVTRILAAAIEVLSSEKEIRWPQIIAPYQVCIVSPKE 473

Query: 357 HDQV--CRDACEKIYAR-------LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
                      E +Y         L+    D+  DD G   IG +   A  +G+PL V+V
Sbjct: 474 GGAERSAIHLAEWLYQDVCLHVPHLAA---DLLLDDRGHMTIGRRVKDAAHVGYPLIVVV 530

Query: 407 GSKFVS-DSKVEIKHRLTGIREDMSLEEVINYAS 439
           G + +  D K E+ +  +G  E +S  +++    
Sbjct: 531 GKRALEADPKFEVINTASGSTEYLSKVDLLQRME 564


>gi|326925418|ref|XP_003208912.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Meleagris gallopavo]
          Length = 470

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 154/456 (33%), Positives = 226/456 (49%), Gaps = 44/456 (9%)

Query: 3   RSKYFLPI---------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P+          +    +    SH+LML+ G+IH  S G Y  LP   ++++ +
Sbjct: 37  LSQLFQPLNLQVGGVAGCESQAAELSCRSHRLMLQGGLIHPASPGCYHLLPPAVRSMEKL 96

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I       G  ++++P+L SA+LW  SGR++  G E+ RLADR+ K    GPTHEE 
Sbjct: 97  IRLIDGAMRNIGGQKVNMPSLSSAELWRASGRWEQMGPELFRLADRHSKEYCLGPTHEEA 156

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T++  +H   SYR+LP   YQ+  KFRDE +PRFG++RSREF MKD Y+FD + E ++H
Sbjct: 157 VTELVAAHSNLSYRHLPLRLYQVTRKFRDEPKPRFGLLRSREFYMKDMYTFDTSEEAARH 216

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F  LGL+ + +RA +G IGG  SHEF + AD GE ++           
Sbjct: 217 TYELVCRAYRSLFKHLGLRCVQVRAATGTIGGTASHEFQLPADIGEDRL----------- 265

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          ++       A    V  E+        K   +RGIEVGH FY GT
Sbjct: 266 ---------------VLCPAGHFAANVEMVDEEQTACPTCGEKLTQSRGIEVGHTFYLGT 310

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F   + K    +MG YG+G  R++AA IE       I WP  +APF+   I
Sbjct: 311 KYSSVHNAVFYTPENKLQLAEMGCYGLGVTRILAASIEVLSTEDSIRWPSLIAPFQACFI 370

Query: 353 NIKAHDQV------CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K   +            + +   L  +  DV  DD  +  IG +   A+ LG+P  VI
Sbjct: 371 PPKKGSKEEEGAVLLEQLYDDVAEALPCLVGDVVLDDRTQMTIGKRLKDANKLGYPYVVI 430

Query: 406 VGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYASH 440
            G +   D  V E+  + TG    ++ E VI   S 
Sbjct: 431 AGRRACEDPPVFEVWDQSTGTVLYLTKEGVIELLSK 466


>gi|224058287|ref|XP_002194154.1| PREDICTED: prolyl-tRNA synthetase 2, mitochondrial (putative)
           [Taeniopygia guttata]
          Length = 470

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 150/459 (32%), Positives = 227/459 (49%), Gaps = 45/459 (9%)

Query: 1   MRRSKYFLPIL---------QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALD 51
           +R S+ F P+          +  P +    S +LML+ G+IH  S G Y +LP   +A++
Sbjct: 34  LRLSQLFQPLALPVGGQVSSEARPGEPTCRSQRLMLQAGLIHPTSPGCYCYLPPTVRAME 93

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
            +  ++ EE    G  ++++P+L SA+LW  SGR+D  G E+ RL DR+D     GPTHE
Sbjct: 94  KLIQLMDEEMQAVGGQKLNLPSLCSAELWRASGRWDQMGPELFRLVDRHDHGYCLGPTHE 153

Query: 112 EVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           EV+T +  S    SY+ LP   YQ+  KFRDE +PRFG++RSREF MKD Y+FD + E +
Sbjct: 154 EVVTALVASQTGLSYKQLPLRLYQVTRKFRDEPKPRFGLLRSREFYMKDMYTFDSSEEAA 213

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           + +Y ++  +Y  +F RLGL  + ++A +G IGG  SHEF + AD GE ++         
Sbjct: 214 RRTYEQVCAAYCSLFARLGLPFVKVQAATGSIGGSTSHEFQLPADIGEDRLLLC------ 267

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                                     A    ++ E+        K    +GIEVGH FY 
Sbjct: 268 --------------------PQGHFAAKVETLNREQPRAPTCGEKLTETKGIEVGHTFYL 307

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GTKYS   +A F  A+ K    +MG YG+G  R++AA IE       I WP  +AP+++ 
Sbjct: 308 GTKYSSVANAVFSSAENKPQLAEMGCYGLGVTRILAASIEVLSTEDSIRWPSLIAPYQLC 367

Query: 351 LINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPL 402
            I  K   +   +         +++   L  +  D   DD  +  IG +   A  LG+P 
Sbjct: 368 FIPPKRGSKEEEEGAALLERVYDELEEALPHLAGDSVLDDRSQLTIGKRLKDAKRLGYPY 427

Query: 403 QVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYASH 440
            V+ G +   D  V E+ ++       ++ E VI   S 
Sbjct: 428 VVVAGKRVCEDPPVFEVWNQNASEVLFLTKEGVIELLSK 466


>gi|311259273|ref|XP_003128020.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like [Sus
           scrofa]
          Length = 472

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 149/439 (33%), Positives = 227/439 (51%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+  P D    S +LML+ G+IH  S G Y  LP   +A++ +  ++ +E    G  +++
Sbjct: 56  LEGRPGDLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRAMEKLVRVVDQEMQAIGGQKVN 115

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLP 129
           +P+L  A+LW  + R+DS GKE+LRL DR+ K    GPTHEE +T +  S    SY+ LP
Sbjct: 116 MPSLSPAELWRATSRWDSMGKELLRLRDRHGKEYCLGPTHEEAITALVASQKTLSYKQLP 175

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F RLG
Sbjct: 176 VLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARRTYSLVCDAYGSLFDRLG 235

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L+ + ++A+ G IGG +SHEF +  D GE ++            S N +  D+   N   
Sbjct: 236 LQCLQVQADVGSIGGTMSHEFQLPVDVGEDRLALCPRCSF----SANVETLDLAQTNCPA 291

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q                            +GIEVGH FY GTKYS   +A F    GK 
Sbjct: 292 CQGPLTET----------------------KGIEVGHTFYLGTKYSSIFNAQFTNVHGKA 329

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEK 367
              +MG YG+G  R++AA IE       I WP  +AP+++ LI  K    ++   +    
Sbjct: 330 SLAEMGCYGLGVTRILAAAIEVLSAEDCIRWPGLLAPYQVCLIPPKKGSKEEAAAELTGH 389

Query: 368 IYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHR 421
           +Y  +++       +V  DD     IG++   AD LG+P  +I G + + +    E++ +
Sbjct: 390 LYDHITEAVPQLRGEVLLDDRTHLTIGNRLKDADKLGYPFVIIAGKRALDEPAHFEVRCQ 449

Query: 422 LTGIREDMSLEEVINYASH 440
            TG    ++ E V+   S 
Sbjct: 450 NTGEVVFLTREGVLELLSQ 468


>gi|301760003|ref|XP_002915815.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Ailuropoda melanoleuca]
 gi|281353585|gb|EFB29169.1| hypothetical protein PANDA_003827 [Ailuropoda melanoleuca]
          Length = 475

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 148/439 (33%), Positives = 223/439 (50%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L++   +    S +LML+ G+IH  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LEDRSGNLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRAMEKLERVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S    SY+ LP
Sbjct: 119 MPSLSPAELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAVTALVASQKTMSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++H+Y  +  +Y  +F RLG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARHTYGLVCEAYGSLFRRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L+ + ++A+ G IGG  SHEF + AD GE +                             
Sbjct: 239 LRCVRVQADVGSIGGTASHEFQLPADIGEDRFAVC------------------------- 273

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  A T  + + +            ARGIEVGH FY GTKYS   +A F  A GK 
Sbjct: 274 -PSCGFSANTETLRSSQTDCPTCRGPLTKARGIEVGHTFYLGTKYSSIFNAQFTDAQGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEK 367
              +MG YG+G  R++AA IE       I WP  +AP+++ LI  K    ++   +    
Sbjct: 333 CLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPGLLAPYQVCLIPPKKGSKEEAAAELMGH 392

Query: 368 IYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHR 421
           +Y  +++       +V  DD     IG++   A+  G+P  +I G + + D    E+  +
Sbjct: 393 LYDLITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWSQ 452

Query: 422 LTGIREDMSLEEVINYASH 440
            T     ++ E V  + S 
Sbjct: 453 NTSEVVFLTREGVTEFLSQ 471


>gi|73956414|ref|XP_546694.2| PREDICTED: similar to prolyl-tRNA synthetase
           (mitochondrial)(putative) [Canis familiaris]
          Length = 632

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 227/456 (49%), Gaps = 44/456 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LM + G+I+  S G Y  LP   +A++ +
Sbjct: 199 LSRMFQPQNLREDQVLSLEGRSDDLTCKSQRLMQQVGLIYPASPGCYHLLPYTVRAMEKL 258

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE 
Sbjct: 259 QRVIDQEMQAIGGQKVNMPSLSPAELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEA 318

Query: 114 MTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S    SYR LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 319 VTALVASQKTLSYRQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARQ 378

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F RLGL+ I ++A+ G IGG  SHEF + AD GE +            
Sbjct: 379 TYGLVCGAYSSLFRRLGLRCIRVQADVGSIGGTASHEFQLPADIGEDRFAVC-------- 430

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A    +   +      ++    ARGIEVGH FY GT
Sbjct: 431 ------------------PSCGFSANMETLRLSQTDCPACQSPLTEARGIEVGHTFYLGT 472

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ LI
Sbjct: 473 KYSSIFNAQFTDAQGRPCPAEMGCYGLGVTRILAAAIEVLSTEDCIRWPGLLAPYQVCLI 532

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGEQ-IGSQFAVADLLGFPLQVI 405
             K    ++V  +    +Y  +++       +V  DD   + IG++   A+  G+P  +I
Sbjct: 533 PPKKGSKEEVATELTGHLYDLITEAVPQLRGEVLLDDRTHRTIGNRLKDANKFGYPFVII 592

Query: 406 VGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYASH 440
            G + + D    E+  + TG    ++ E V  + S 
Sbjct: 593 AGKRALEDPAHFEVWSQNTGEVVFLTREGVTEFLSQ 628


>gi|47222174|emb|CAG11600.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 483

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 236/459 (51%), Gaps = 47/459 (10%)

Query: 1   MR----RSKYFLPI-LQENPRDA------EIASHKLMLRTGMIHQHSKGIYSWLPLGQKA 49
           M+     S+ + P  L++  +D+         S +LM + G+IH  + G Y +LP   ++
Sbjct: 45  MKPTLLVSRLYQPSNLRDVGQDSFLHGEMTCKSQRLMQQAGLIHPSNPGCYYYLPATVRS 104

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           ++ +  +I +E    G  ++ +P+L SA+LW  S R+D  GKE+LRL DR+       PT
Sbjct: 105 VEKLIRVIDQEMQEIGGQKLDMPSLCSAELWKASERWDLMGKELLRLKDRHGGDYCLAPT 164

Query: 110 HEEVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           HEE +T +       SY+ LP   YQI  KFRDE +PRFG++R REF MKD YSFD++ E
Sbjct: 165 HEEAVTTLVAHQTSLSYKQLPLLLYQITRKFRDEPKPRFGLLRGREFYMKDMYSFDVSEE 224

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDF 227
            +  +Y  +  +Y R+F RLGL  + ++A++G IGG LSHEF + AD GE ++  C    
Sbjct: 225 AAYQTYESVCQAYTRLFARLGLHCVQVQADTGNIGGKLSHEFQLPADIGEDRLLLCGNCS 284

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               I + ++D  D     +                             V ++GIEVGH 
Sbjct: 285 FAANIETVSSDRTDCPQCRT--------------------------GTLVESKGIEVGHT 318

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           FY G KYS   +ATF  A  K    +MG +G+G  R++AA IE     +GI WP  +AP+
Sbjct: 319 FYLGKKYSSVFNATFSNAQNKLAEAEMGCFGLGVTRILAAAIEVMSTEEGIRWPGLLAPY 378

Query: 348 KISLINIKAHDQVCRD--ACEKIYARLS----KVGCDVFWDDMGE-QIGSQFAVADLLGF 400
           ++ ++  K   +V +     E++   L+    ++  +V  DD  +  IG +   A  LG+
Sbjct: 379 QVCVVPPKKGSKVDKATIIAEELVQTLTVTLPRLRGEVVLDDRTQMTIGRRLKDASKLGY 438

Query: 401 PLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYA 438
           P  V+VG   + +    E+  + TG    +S E +++  
Sbjct: 439 PYVVVVGQGALEEPSRFEVICQQTGATMFLSQEGLLDLL 477


>gi|62078861|ref|NP_001014086.1| probable prolyl-tRNA synthetase, mitochondrial precursor [Rattus
           norvegicus]
 gi|73919763|sp|Q5M7W7|SYPM_RAT RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|56789529|gb|AAH88403.1| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Rattus
           norvegicus]
 gi|149035787|gb|EDL90468.1| rCG50302 [Rattus norvegicus]
          Length = 475

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 150/455 (32%), Positives = 229/455 (50%), Gaps = 44/455 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 42  VSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  +GR+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKINMPSLSPAELWRATGRWDLMGRELLRLKDRHGKEYCLGPTHEEA 161

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S  K SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 162 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y+ +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYSLVCDAYCRLFDRLGLRWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHF--- 278

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            S NT+  D+        Q                            +GIEVGH FY GT
Sbjct: 279 -SANTEIVDLSQKICPDCQGPLTET----------------------KGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 316 KYSSIFNAHFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPSLLAPYQVCII 375

Query: 353 NIKA--HDQVCRDACEKIY----ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    +    +  E++Y      L ++  +V  DD     IG++   A+ LG+P  +I
Sbjct: 376 PPKKGSKEAAATEIVERLYDDVTEALPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVII 435

Query: 406 VGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYAS 439
              + + D    E+  + TG    ++ E V+   +
Sbjct: 436 ASKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 470


>gi|284048337|ref|YP_003398676.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952558|gb|ADB47361.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 636

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 159/448 (35%), Gaps = 48/448 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E   RD      +L L   M+  +  G   +LP G    + +    RE   +
Sbjct: 231 EAYLHMMEEAEKRDHRKLGKQLGLF--MLSDYGPGFPFFLPNGMIIRNTLIDYWREVHRK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +  LW  SG +D Y + M      +       P +      ++ +   
Sbjct: 289 YGYQEVMTPMIMNRQLWETSGHWDHYKENMY-FTQIDGDDYAIKPMNCPGGMLVYANEPH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP    ++ L  R EL     G+ R R F   DA+ F + P   +    +    + 
Sbjct: 348 SYKELPLRVGELGLVHRHELSGALHGLFRVRCFTQDDAHIFMM-PNQIEDVIQETIRLFD 406

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++   GL        + P   +G D + E    A                         
Sbjct: 407 EVYATFGLTY-HAELSTRPDNSMGDDATWEMTTNA--------------------LRKAM 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           DD     SI E   A Y    D H           K    R  + G I           +
Sbjct: 446 DDFGLKYSINEGDGAFYGPKIDFH----------LKDSIGRTWQCGTI-QLDMLLPEKFN 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ G DG+ H  V +     G++     ++  ++ G    W   +AP ++ ++ I    
Sbjct: 495 LTYTGEDGQKHRPVMIHRVVYGSIERFIGILIENYAGAFPAW---LAPEQVRVMPITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  ++I  +L         DD  E++G +   A +   P  +IVG K V    V +
Sbjct: 551 --YNEYAKQIVDKLEAQKIRAHLDDRNEKVGYKIREAQVKKVPYMLIVGEKEVESGTVSV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R  G +  M ++E I        N +
Sbjct: 609 RSRDNGEQGAMPVDEFIAKLQDEIKNRK 636


>gi|187607298|ref|NP_001120088.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Xenopus
           (Silurana) tropicalis]
 gi|165971208|gb|AAI58530.1| LOC100145097 protein [Xenopus (Silurana) tropicalis]
          Length = 466

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 138/437 (31%), Positives = 217/437 (49%), Gaps = 35/437 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +  P +    S KLM++ G+I   S G + +LP   +A++ +  +I +E    G  ++ +
Sbjct: 51  EAKPNEPTSKSQKLMIKAGLIRPSSPGCFHYLPFTVRAMEKLIRLIDKEMQDIGGQKIDM 110

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPF 130
           PTL SA LW +SGR+D  GKE+ RL DR+++    GPTHEE +T +  S    + + LP 
Sbjct: 111 PTLSSAALWRQSGRWDLMGKELFRLMDRHNQEYCLGPTHEEAVTHLVASEGGINNKELPL 170

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQI  KFRDE RP FG++R REF MKD Y+FD++ E +  +Y  +  +Y  IF  LG+
Sbjct: 171 LLYQITRKFRDEQRPCFGLLRGREFYMKDMYTFDISDESAYETYRNVCDAYTNIFRALGV 230

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           + + ++A++G IGG +SHEF + A+ GE ++                          +  
Sbjct: 231 RFVKVQADTGNIGGKMSHEFHLPANIGEDRLL-------------------------VCG 265

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                       HNEK    +   +    +GIE+GH FY GTKYS    AT   +     
Sbjct: 266 SCDFSANVELLQHNEKNC-PVCTGQLKETKGIEIGHTFYLGTKYSHVFKATCYDSQKTPF 324

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKI 368
             +MG YGIG  R++AA +E       I WP  +AP+++ LI+ K    +       E +
Sbjct: 325 IAEMGCYGIGVSRLLAASLEVLSKEDDIHWPGLIAPYQVCLISPKKGSKESEAITISETL 384

Query: 369 YARLSK----VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRL 422
           Y  + +    +  +   DD     IG +   A + G+P  ++VG K +    + E++   
Sbjct: 385 YDEIIQSVPWLRDETVLDDRSYLTIGKRVKEAHMTGYPYIIVVGKKALETPSLFEVRSHN 444

Query: 423 TGIREDMSLEEVINYAS 439
           T      S E VI++  
Sbjct: 445 TDEVHFFSREGVIDFLQ 461


>gi|332247927|ref|XP_003273115.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial [Nomascus
           leucogenys]
          Length = 475

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 146/439 (33%), Positives = 227/439 (51%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKFDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F+RLG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L  + ++A+ G IGG +SHEF +  D GE ++            S N +  D   +N   
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEDRLAICPRCSF----SANMETLDFSQMNCPA 294

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q                            +GIEVGH FY GTKYS   +A F    GK 
Sbjct: 295 CQGP----------------------LTKTKGIEVGHTFYLGTKYSSIFNAQFTNVYGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEK 367
              +MG YG+G  R++AA IE       + WP  +AP++  LI  K    ++   +   +
Sbjct: 333 TLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELIGQ 392

Query: 368 IYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHR 421
           +Y  +++       +V  DD     IG++   A+  G+P  +I G + + D    E+  +
Sbjct: 393 LYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAYFEVWCQ 452

Query: 422 LTGIREDMSLEEVINYASH 440
            TG    ++ + V++  + 
Sbjct: 453 NTGEVVFLTKDGVMDLLTQ 471


>gi|194207413|ref|XP_001492689.2| PREDICTED: prolyl-tRNA synthetase 2, mitochondrial (putative)
           [Equus caballus]
          Length = 472

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 221/442 (50%), Gaps = 35/442 (7%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+    D    S +LML+ G+IH  S G Y  LP   +AL+ +  +I +E    G  
Sbjct: 53  VPSLEGGSGDLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRALEKLVRVIDQEMRAIGGQ 112

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYR 126
           ++S+P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S    SY+
Sbjct: 113 KVSMPSLSPAELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAVTALVASQKTLSYK 172

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y  +  +Y  +F 
Sbjct: 173 QLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARQTYGLVCDAYSSLFA 232

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           RLGL  + ++A  G IGG +SHEF + AD GE Q                          
Sbjct: 233 RLGLPCVKVQAGVGSIGGTMSHEFQLPADVGEDQFAVCPSCSFS---------------- 276

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                     A    ++  +      +      +GIEVGH FY GTKYS   +A F    
Sbjct: 277 ----------ANVETLNLSQTNCPACQGPLTETKGIEVGHTFYLGTKYSSVFNAQFTNVH 326

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDA 364
           GK    +MG YG+G  R++AA IE       + WP  +AP+++ LI  K    ++V  + 
Sbjct: 327 GKPSLAEMGCYGLGVTRILAAAIEVLSTEYCLRWPGLLAPYQVCLIPPKKGSKEEVATEL 386

Query: 365 CEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEI 418
              +Y  +++       +V  DD     IG++   A+  G+P  +I G + +      E+
Sbjct: 387 AGHLYDHITEAVPQLRGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEAPAHYEV 446

Query: 419 KHRLTGIREDMSLEEVINYASH 440
             + TG    ++ E V+   S 
Sbjct: 447 WCQNTGEVVFLTKEGVVGLLSQ 468


>gi|242239483|ref|YP_002987664.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242131540|gb|ACS85842.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 642

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 154/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S Y   + +   RD      +L L    + + + G+  W   G      + A +R + 
Sbjct: 228 QLSAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G +++Y + M   +  N +     P +      IF   
Sbjct: 286 KEYQYQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRTEVNSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S E    A+                 P E   + 
Sbjct: 404 VYDMYGTFGFEKIAVKLSTRPEKRIGSDEMWDRAEEDLAAALTENGIPFEYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++ G + +    V +    +G+M     ++     G    W   +AP ++ ++NI   
Sbjct: 494 NASYVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DSQSDYVSELTRKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + + EVIN       + 
Sbjct: 608 VRTRRGKDLGSIDVSEVINKLQEEIRSR 635


>gi|148235110|ref|NP_001079554.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Xenopus laevis]
 gi|28278090|gb|AAH44273.1| MGC53152 protein [Xenopus laevis]
          Length = 466

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 135/437 (30%), Positives = 219/437 (50%), Gaps = 35/437 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +  P +    S KLM++ G+I   + G + +LP   +A++ +  +I +E    G  ++ +
Sbjct: 51  ESKPNEPTSKSQKLMIKAGLIRPSNPGCFHYLPYTVRAMEKLIRLIDKEMQDIGGQKIDM 110

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPF 130
           PTL SA LW +SGR+D  GKE+ RL DR+++    GPTHEE++T +  S    + + LP 
Sbjct: 111 PTLGSAALWRQSGRWDLMGKELFRLKDRHNQEYCLGPTHEELVTHLVASEGGINNKELPL 170

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQI  KFRDE RP FG++R REF MKD Y+FD++ E +  +Y  +  +Y  IF  LG+
Sbjct: 171 LLYQITRKFRDEQRPCFGLLRGREFYMKDMYTFDISEESAYETYRNVCDAYSNIFRALGV 230

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + ++A++G IGG +SHEF + A+ GE ++                          +  
Sbjct: 231 HFVKVQADTGNIGGKMSHEFHLPANIGEDRLL-------------------------VCG 265

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                      +H+EK    +   +    +GIE+GH FY GTKYS    A    +     
Sbjct: 266 SCDFSANVELLLHDEKNC-PVCTGQLKETKGIEIGHTFYLGTKYSHVFKANCYDSQKTPF 324

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD--ACEKI 368
             +MG YGIG  R++AA +E   +   I WP  +AP+++ LI+ K   +        E +
Sbjct: 325 LAEMGCYGIGVSRLLAASLEVLSNEDDIHWPGLIAPYQVCLISPKKGSKEIEAISVAETL 384

Query: 369 YARLSK--VGCD--VFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRL 422
           Y  + +   G       DD     IG +   A ++G+P  +++G K +    + E++   
Sbjct: 385 YDDIIQSVCGLRDETVLDDRSYLTIGKRVKEAHMMGYPYVIVIGKKALETPSLFEVRSHN 444

Query: 423 TGIREDMSLEEVINYAS 439
           T     +S E VI++  
Sbjct: 445 TDEVHFLSREGVIDFLR 461


>gi|20808138|ref|NP_623309.1| threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|22654110|sp|Q8R9A4|SYT_THETN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|20516726|gb|AAM24913.1| Threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 644

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 88/445 (19%), Positives = 157/445 (35%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +  IH    G   + P G    + +    R+E  
Sbjct: 237 LDEYLHMMEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHI 294

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + + +LW  SG +D Y + M    + + +     P +      +++S +
Sbjct: 295 KRGYQEIRTPIILNEELWKRSGHWDHYKENMY-FTEIDGQTYAIKPMNCPGAMLVYKSTL 353

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +    
Sbjct: 354 RSYRDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLV 412

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G +   +   + P     + E   LA           +        E   +  
Sbjct: 413 DYFYKIFGFEY-HVELSTRPENSMGTDEEWELATNALISALKRANLPYKVNEGEGAFYGP 471

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               K    R  + G I     +        
Sbjct: 472 KIDF---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELE 503

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  + +     G++     ++     G    W   +AP ++ ++ I    + 
Sbjct: 504 YIGPDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SEK 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   K+Y RL +    V  DD  E+IG +   A L   P  +IVG + V +  V ++ 
Sbjct: 558 HHEYARKVYERLQEHDIRVELDDRNEKIGYKIREAQLQKIPYMLIVGDREVEEGNVSLRS 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    +SL+  I       +  
Sbjct: 618 RKDGDLGPISLDNFIEKILKEIATK 642


>gi|109005002|ref|XP_001114166.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Macaca mulatta]
          Length = 475

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 148/439 (33%), Positives = 228/439 (51%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKFGDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +PTL  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  +  K SY+ LP
Sbjct: 119 MPTLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIAAQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +YN +  +Y  +F+RLG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYNLVCDAYCSLFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L+ + ++A+ G IGG +SHEF +  D GE ++            S N +  D+  +N   
Sbjct: 239 LRFVKVQADVGSIGGTMSHEFQLPVDVGEDRLAICPHCSF----SANLETLDLSQMNCPA 294

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q                            +GIEVGH FY GTKYS   +A F    GK 
Sbjct: 295 CQSPLTET----------------------KGIEVGHTFYLGTKYSSIFNAQFTNIYGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRD 363
              +MG YG+G  R++AA IE       + WP  +AP++  LI  K         ++   
Sbjct: 333 SLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELIGQ 392

Query: 364 ACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHR 421
            C+ I   + ++  +V  DD     IG++   A+  G+P  +I G + + D    E+  +
Sbjct: 393 LCDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQ 452

Query: 422 LTGIREDMSLEEVINYASH 440
            TG    ++ + V++  + 
Sbjct: 453 NTGEVVFLTKDGVMDLLTQ 471


>gi|296208047|ref|XP_002750943.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Callithrix jacchus]
          Length = 475

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 225/439 (51%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LEGRSGDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQVIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F+RLG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRCREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L+ + ++A  G IGG +SHEF +  D GE  +            S N +  D+  +N   
Sbjct: 239 LRFVKVQANVGSIGGTMSHEFQLPMDIGEDWLAICPSCSF----SANMETLDVSQMNCPA 294

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q                            +GIEVGH FY GTKYS   +A F    GK 
Sbjct: 295 CQGP----------------------LTKTKGIEVGHTFYLGTKYSSIFNAQFTNVYGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEK 367
              +MG YG+G  R++AA IE       + WP  +AP++  LI  K    ++   +   +
Sbjct: 333 SLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELAGQ 392

Query: 368 IYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHR 421
           +Y  +++       +V  DD     IG++   A   G+P  +I G + + D    E+  +
Sbjct: 393 LYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDASKFGYPFVIIAGKRALEDPAHFEVWCQ 452

Query: 422 LTGIREDMSLEEVINYASH 440
            TG    ++ + V++  + 
Sbjct: 453 NTGEVVFLTKDGVMDLLTQ 471


>gi|328861737|gb|EGG10840.1| hypothetical protein MELLADRAFT_42095 [Melampsora larici-populina
           98AG31]
          Length = 486

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 238/447 (53%), Gaps = 40/447 (8%)

Query: 3   RSKYFLPILQ-ENPRDAEI--ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +S  + P ++ +   D  I    H L+LR G + Q S GI+++LP   + L  V  I+RE
Sbjct: 32  QSNRYSPTIKTQAQSDTSISSPGHHLLLRAGFLRQSSTGIWNFLPNAIRVLKKVEDIVRE 91

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  R GA E+S+  LQ++ LW  SGR+++ GKE+ RL+DR D  ++  PTHEE +T + +
Sbjct: 92  EMERIGASEVSLSHLQTSSLWKASGRWNTAGKELFRLSDRKDAHLLLAPTHEEEITQLVK 151

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + S + LP   + I  K+RDELRPR G++RSREF+MKD Y+FDL    +  +Y+ +  
Sbjct: 152 LDVNSSKQLPVRLFHIGRKYRDELRPRAGLLRSREFIMKDLYTFDLDRTKALETYSAVQG 211

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y +I  R+G+  +   A+SG IGG  SHE+   + +GE  V                  
Sbjct: 212 AYEKILKRIGIPFVVAEADSGAIGGSQSHEYQFESPSGEDTVIKCTKCDYIANVELAKSV 271

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                 +    +  +P                      S++ IEV H FY GTKYS  +S
Sbjct: 272 LVPPLSDVNALRCRSP--------------------LGSSKAIEVAHTFYLGTKYSSSLS 311

Query: 300 ATFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI-N 353
           AT+K +D      K++ ++MG +GIG  R++ A+ E SH   G+ WP +VAPFK+ +I  
Sbjct: 312 ATYKISDPKTGLQKENPLEMGCFGIGISRLMGAIAECSHTETGLRWPINVAPFKVCIIIP 371

Query: 354 IKAHDQVCRDA-----------CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++ +D    D             E I  ++ ++  +V  DD  ++IG +   ADL+G+P+
Sbjct: 372 MQENDAGSSDLIKSVAQIIGREVESIKTKVGELKGEVLIDDRIQRIGWKLMDADLVGYPI 431

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +++G++++ +  +EI+    G   ++
Sbjct: 432 LIVLGNRWIKNQVIEIRDVKNGKVIEL 458


>gi|238919782|ref|YP_002933297.1| threonyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259516479|sp|C5B846|SYT_EDWI9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238869351|gb|ACR69062.1| threonyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 642

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEIWDRAEEDLAAALQENGIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP +  ++NI       
Sbjct: 498 VGENNERVVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVEELSKKLQAAGIRVKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS+++VI        + 
Sbjct: 612 RGKDLGVMSIDDVIKKLQQEIRSR 635


>gi|320593705|gb|EFX06114.1| prolyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 495

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 142/468 (30%), Positives = 223/468 (47%), Gaps = 43/468 (9%)

Query: 2   RRSKYFLPILQENPRDAE--IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R +++++P  Q   +DA+    SH  ++R G   Q   G++  LPLG +  D + A++ +
Sbjct: 45  RLTQFWVPPPQVALKDAKQNEESHAKLVRAGFFRQAHSGVFHMLPLGLRVQDKIEALVDK 104

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                GA  +++ ++ SA LW  SGR  S   E+ +  DR     +  PTHEE +T++  
Sbjct: 105 HMRSIGASRVALSSITSAGLWERSGRLGSVKPELFQFEDRKQAKFLLAPTHEEEITELVA 164

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + SYR+LP   YQI  K+RDE+RPR+G++RSREF+MKD Y+FD T E +  +Y ++  
Sbjct: 165 QSVHSYRDLPLRLYQITRKYRDEMRPRYGILRSREFIMKDLYTFDTTVEAALATYEQVRA 224

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y  IF  L +     RA SG +GGDLSHE+ + A  GE  V   +              
Sbjct: 225 AYAAIFAELRVPVRVARASSGDMGGDLSHEYHLAASLGEDDVASCRACGFAGNTEITHIG 284

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D     S  +                  D          R IE+GH FY GT+YS P++
Sbjct: 285 PDSRPARSGDDCP----------------DCGAAGSLQVERAIELGHTFYLGTRYSEPLN 328

Query: 300 ATFKGADGKD----HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              +G             MG YGIG  R++ AV +   D  G+ WP ++APF+++++   
Sbjct: 329 VRVQGDQNTPATSTITPLMGCYGIGISRILGAVADHLADPTGLRWPRAIAPFEVAVV--A 386

Query: 356 AHDQVCRDACEKIYARLSKV---GCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGS--- 408
           A         E++Y  L+       D   DD     +  +   ADL G+P+ VIVG+   
Sbjct: 387 AGGSPLAQVAERVYDELTANTETRLDALLDDRPAASLPYKLKDADLTGYPVVVIVGAAWR 446

Query: 409 KFVS------------DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  +            D   E++ R  G+R+D+ L E+  + S   + 
Sbjct: 447 RSTATATDSSAPNISLDGLCEVQCRQLGLRQDVPLSELKTFVSGLLAQ 494


>gi|326391979|ref|ZP_08213481.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325991980|gb|EGD50470.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 634

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENMY-FTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA           +        +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSMGSDEDWELATNALISALNRVNLPYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SDKHYA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E+IG +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKIGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLNEFIEKILKEIATK 632


>gi|323702723|ref|ZP_08114384.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532386|gb|EGB22264.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 150/445 (33%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   I +   RD      +L L +  I     G   + P G    + +    R E  
Sbjct: 228 LDEHLFRIEEAKRRDHRKLGQELDLFS--IQDEGPGFPFFHPKGMVLRNELENFWRREHK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  LW +SG +  Y + M      +D      P +      ++++ +
Sbjct: 286 KRGYQEIRTPIILNRSLWEQSGHWAHYKENMY-FTKIDDADYAVKPMNCPGSILVYKTRM 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +   +
Sbjct: 345 HSYRDLPLRLAELGLVHRHELSGALHGLMRVRCFTQDDAHIFML-PSQIKDEIIGVIDLF 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   GL    +   + P     S E   LA         +K+        +   +  
Sbjct: 404 EYFYKTFGLSY-HVELSTRPEKSMGSDEIWELATRSLQDALEAKNMPYKVNEGDGAFYGP 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I  +                                 R  + G I     +       T
Sbjct: 463 KIDFHLTDS---------------------------LGRTWQCGTI-QLDFQMPEKFDLT 494

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +     G++     ++     G   +W   +AP ++ ++ I      
Sbjct: 495 YVGEDGQKHRPVMIHRVVFGSIERFIGILTEHFAGAFPVW---LAPVQVKVLPITDK--- 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L  +   V  D   E+I  +   A     P  +++G + + +  V ++ 
Sbjct: 549 HHDYARELVQKLDAMDIRVELDARNEKINYKIREAQTQKIPYMLVIGDREMENGTVAVRQ 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    + ++E I        N 
Sbjct: 609 RGKGDIGAVKMDEFIAKIEDEIKNK 633


>gi|332809089|ref|XP_513427.3| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial [Pan
           troglodytes]
          Length = 475

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 146/439 (33%), Positives = 228/439 (51%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L  + ++A+ G IGG +SHEF +  D GE ++            S N +  D+  +N   
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEDRLAICPRCSF----SANMETLDLSQMNCPA 294

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q                            +GIEVGH FY GTKYS   +A F    GK 
Sbjct: 295 CQGP----------------------LTKTKGIEVGHTFYLGTKYSSIFNAQFTNVCGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEK 367
              +MG YG+G  R++AA IE       + WP  +AP++  LI  K    +Q   +   +
Sbjct: 333 TLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQ 392

Query: 368 IYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHR 421
           +Y  +++       +V  DD     IG++   A+  G+P  +I G + + D    E+  +
Sbjct: 393 LYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQ 452

Query: 422 LTGIREDMSLEEVINYASH 440
            TG    ++ + V++  + 
Sbjct: 453 NTGEVAFLTKDGVMDLLTQ 471


>gi|50121350|ref|YP_050517.1| threonyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|73919790|sp|Q6D4G8|SYT_ERWCT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49611876|emb|CAG75325.1| threonyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 642

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 156/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + Y   + + + RD      +L L    + + + G+  W   G      + A +R + 
Sbjct: 228 QLASYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    +W ++G +D+Y + M   +  N +     P +      IF   
Sbjct: 286 KSYQYQEVKGPFMMDRVMWEKTGHWDNYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S E    A+          +      P E   + 
Sbjct: 404 VYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAAALTENNIEFAYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           SA++ G   +    V +    +G+M     ++     G    W   +AP ++ +INI   
Sbjct: 494 SASYVGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIINIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DSQSDYVNELTQKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + + EVI+       + 
Sbjct: 608 VRTRRGKDLGSLDVSEVISKLQQEIRSR 635


>gi|192360042|ref|YP_001982990.1| threonyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|238692463|sp|B3PL16|SYT_CELJU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190686207|gb|ACE83885.1| threonyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 642

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 160/453 (35%), Gaps = 45/453 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L +L+E   RD    + K  L    +   + G+  W P G      +   +R +
Sbjct: 227 KQLKAYLNLLEEAAKRDHRKLAKKFDLF--HLQDEAPGMVFWHPKGWTLWQQIEQYMRAK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN  G  E+  P +    LW +SG +++Y + M        +     P +      IF  
Sbjct: 285 QNDWGYQEVRTPLIMDRVLWEKSGHWENYRENMFTTESEK-RDFAVKPMNCPGHVQIFNH 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++S+++LP    +     R+E      G+MR R F+  DA+ F  T +           
Sbjct: 344 GLRSHKDLPLRLAEFGSCHRNEASGALHGIMRVRGFVQDDAHIF-CTEDQVVAEVAAFNQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   I ++    P     S E    A+ G      +       +P E   +
Sbjct: 403 MLKSVYDDFGFTDIAVKLSLRPEKYAGSLETWNKAEEGLRTALRAAGLEWEELPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                             + K    R  + G I      Y LP  
Sbjct: 463 GPKIEY---------------------------QIKDALGRSWQCGTI---QLDYVLPER 492

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A +   D  +   V +    +G+      ++   ++G   +W   ++P ++ + NI  
Sbjct: 493 LDAEYVADDNVRKRPVMLHRAILGSFERFLGILIEHYEGSFPVW---LSPVQVVVANIT- 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +++   L + G  V  D   E+IG +     +   P  ++VG K V +  +
Sbjct: 549 --DSQAEYVKRVEKALREQGIRVIADLRNEKIGFKIREHTIQRVPYLLVVGDKEVENQSL 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            ++ R       M L+  I + +   +    V 
Sbjct: 607 AVRTRDGKDLGVMPLDAFIAHLTADIARRGRVF 639


>gi|145589014|ref|YP_001155611.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083617|sp|A4SX33|SYT_POLSQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145047420|gb|ABP34047.1| Ser-tRNA(Thr) hydrolase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 640

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 149/444 (33%), Gaps = 45/444 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + + G+  W P G      V   +R      G
Sbjct: 231 YLHMLEESEKRDHRRLGKQLDLF--HFQEEAPGLIFWHPKGWSIWQEVEQYMRRVYQNEG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M      N +A    P +      I+ S + SY
Sbjct: 289 YQEVKAPQILDRGLWEKSGHWDNYKENMFTTESEN-RAYALKPMNCPGHVQIYNSGLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F +     R+E      G+MR R F   D + F  T +  +        +   +
Sbjct: 348 RELPLRFGEFGQCHRNEPSGALHGLMRVRGFTQDDGHIF-CTEDQIQSEVAAFDKAVRAV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P            A+        +       +P E   +   I 
Sbjct: 407 YQDFGFTEVAVKLALRPAKRVGDDAIWDKAEDALRGALKASGQEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      +S+P  + A +
Sbjct: 467 Y---------------------------HLKDSIGRTWQCGTI---QVDFSMPARLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G++     ++  +H G   +W   +AP +  ++NI  +    
Sbjct: 497 VAEDNSRKTPVMLHRAIVGSLERFIGILIENHAGNMPVW---LAPTQAVVLNISGNSAA- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +K+   L K G  V  D   E+I  +     L   P  ++VG K    + V ++ R
Sbjct: 553 --YAQKVQQSLKKQGFRVESDLRNEKITYKIREHALQKIPFLLVVGDKESESNTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M L+  +       S  
Sbjct: 611 GGVDLGVMPLDAFVARLQQDISQK 634


>gi|317491930|ref|ZP_07950364.1| threonyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920051|gb|EFV41376.1| threonyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 645

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRVKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+    +            P E   +   I 
Sbjct: 408 YSIFGFEKIAVKLSTRPEKRIGSDEIWDRAEEDLAEALKENGIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  ++A++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLNASY 497

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VGENNERLVPVMIHRAILGSMERFIGILTEEYAGFYPTW---LAPVQVQVMNIT---DAQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 ADYVDELTKKLQAAGIRAKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGTMDVNEVIEKLQKEIRSR 635


>gi|297544949|ref|YP_003677251.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842724|gb|ADH61240.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 634

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENMY-FTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA           +        +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSMGSDEDWELATNALISALNRVNLPYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SDKHYA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRRE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLSEFIEKILKEIATK 632


>gi|307266242|ref|ZP_07547784.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918772|gb|EFN49004.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 634

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENMY-FTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA           +        +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSMGSDEDWELATNALISALNRVNLPYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SDKHYA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E+IG +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQHVYGRLLENDIRAELDDRNEKIGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLNEFIEKILKEIATK 632


>gi|269139162|ref|YP_003295863.1| threonyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267984823|gb|ACY84652.1| threonyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304559086|gb|ADM41750.1| Threonyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 642

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEIWDRAEEDLAAALQENGIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP +  ++NI       
Sbjct: 498 VGENNERVVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVEELSKKLQAAGIRAKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +S+++VI        + 
Sbjct: 612 RGKDLGVISIDDVIEKLQQEIRSR 635


>gi|260770313|ref|ZP_05879246.1| threonyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260615651|gb|EEX40837.1| threonyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 642

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRHKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-RDYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E    ++        +          E   +   I  
Sbjct: 410 TTFGFDNIAVKLSTRPEKRVGSDEIWDKSEEALKHSLEAMGIAYEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPSRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G + +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ +++     ++ +
Sbjct: 614 GKDLGKFKLDDFVSHIQTEIASRK 637


>gi|315181382|gb|ADT88295.1| threonyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 642

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRHKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-RDYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E    ++        +          E   +   I  
Sbjct: 410 TTFGFDNIAVKLSTRPEKRVGSDEIWDKSEEALKHSLEAMGIAYEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G + +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ +++     ++ +
Sbjct: 614 GKDLGKFKLDDFVSHIQTEIASRK 637


>gi|322807448|emb|CBZ05022.1| threonyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 635

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 168/449 (37%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L +  IH+   G   + P G    + +    R
Sbjct: 224 KKSELDEYLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNILENFWR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + +LW +SG +D Y + M    + +D      P +      ++
Sbjct: 282 EEHTKAGYQEIRTPLILNEELWHQSGHWDHYKENMY-FTNIDDSDYAIKPMNCPGGILVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +
Sbjct: 341 KNSMHSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEIVGI 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                + +   G +   +   + P     S E   +A  G  +   S          +  
Sbjct: 400 IKLIDKFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGA 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               K    R  + G I     +    
Sbjct: 459 FYGPKIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPER 490

Query: 298 MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++ GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI  
Sbjct: 491 FDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT- 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV
Sbjct: 547 --DSQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKV 604

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    +SLEE I    +   N 
Sbjct: 605 AVRSRKDGDLGAISLEEFIEKIKNEIKNK 633


>gi|34303926|ref|NP_689481.2| probable prolyl-tRNA synthetase, mitochondrial precursor [Homo
           sapiens]
 gi|73919761|sp|Q7L3T8|SYPM_HUMAN RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|33873290|gb|AAH11758.2| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|39644604|gb|AAH07956.2| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|56204888|emb|CAI18996.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119627074|gb|EAX06669.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Homo sapiens]
 gi|158260381|dbj|BAF82368.1| unnamed protein product [Homo sapiens]
 gi|312152388|gb|ADQ32706.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [synthetic
           construct]
          Length = 475

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 146/438 (33%), Positives = 228/438 (52%), Gaps = 35/438 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L  + ++A+ G IGG +SHEF +  D GE ++            S N +  D+  +N   
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEDRLAICPRCSF----SANMETLDLSQMNCPA 294

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q                            +GIEVGH FY GTKYS   +A F    GK 
Sbjct: 295 CQGP----------------------LTKTKGIEVGHTFYLGTKYSSIFNAQFTNVCGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEK 367
              +MG YG+G  R++AA IE       + WP  +AP++  LI  K    +Q   +   +
Sbjct: 333 TLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQ 392

Query: 368 IYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHR 421
           +Y  +++       +V  DD     IG++   A+  G+P  +I G + + D    E+  +
Sbjct: 393 LYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQ 452

Query: 422 LTGIREDMSLEEVINYAS 439
            TG    ++ + V++  +
Sbjct: 453 NTGEVAFLTKDGVMDLLT 470


>gi|326795752|ref|YP_004313572.1| threonyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326546516|gb|ADZ91736.1| threonyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 638

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 157/444 (35%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      KL L    + + + G+  W P G +    V   +R++Q    
Sbjct: 232 YLLRIEEAEKRDHRKLGKKLDLF--HVQEEAPGMVFWHPKGWRLYQAVEQYMRQKQLDNN 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +  Y + M      N +     P +      ++   +KSY
Sbjct: 290 YQEVKTPQIVDRVLWEKSGHWGKYQENMFTTHSEN-RDYAVKPMNCPCHIQVYNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LPF   +     R+E      G+MR R F+  D + F +T    +   ++       +
Sbjct: 349 RDLPFRMAEFGSCHRNEPSGALHGIMRVRNFVQDDGHIF-VTENQIQSEVSEFIKLLHEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     S E    A+                +P E   +   I 
Sbjct: 408 YADFGFDNIIYRLSTRPEQRVGSDEVWDKAEKALADALDVAGLEWEELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      +S+P  + A +
Sbjct: 468 FSL---------------------------KDAIGRVWQCGTI---QVDFSMPTRLGAQY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     V +    +G++     ++    +G   +W   +AP ++ ++NI       
Sbjct: 498 VSEDGSRQTPVMLHRAIVGSLERFIGILIEETEGSFPLW---LAPEQVVIMNIT---DRQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + CE +   L+  G     D   E+IG +     L   P  ++VG K V + KV ++ R
Sbjct: 552 TEYCENLEKTLNSNGFRAKLDLRNEKIGFKIREHTLQRIPYLIVVGDKEVENGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS+ E  +      +  
Sbjct: 612 SGEDLGVMSVNEFEDLLRDEVARR 635


>gi|167040680|ref|YP_001663665.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307724045|ref|YP_003903796.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|166854920|gb|ABY93329.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307581106|gb|ADN54505.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 634

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENMY-FTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA           +        +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSMGSDEDWELATNALISALNRVNLPYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SDKHYA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLSEFIEKILKEIATK 632


>gi|256751279|ref|ZP_05492159.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749834|gb|EEU62858.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 634

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENMY-FTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA           +        +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSMGSDEDWELATNALISALNRVNLPYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SDKHYA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLNEFIEKILKEIATK 632


>gi|251789558|ref|YP_003004279.1| threonyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247538179|gb|ACT06800.1| threonyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 642

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 153/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S Y   + +   RD      +L L    + + + G+  W   G      + A +R + 
Sbjct: 228 QLSAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G +++Y + M   +  N +     P +      IF   
Sbjct: 286 KEYQYQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVRDEVNNCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S E    A+                 P E   + 
Sbjct: 404 VYDMYSTFGFEKIVVKLSTRPEKRIGSDETWDRAEEDLAAALTENGLPFEYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           SA++ G + +    V +    +G+M     ++     G    W   +AP +  ++NI   
Sbjct: 494 SASYVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DSQSDYVSELTRKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M++ EVI        + 
Sbjct: 608 VRTRRGKDLGSMNVSEVITKLQEEIRSR 635


>gi|76613805|ref|XP_585755.2| PREDICTED: hypothetical protein [Bos taurus]
 gi|297473149|ref|XP_002686423.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296489106|gb|DAA31219.1| hypothetical protein BOS_3571 [Bos taurus]
          Length = 475

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 229/456 (50%), Gaps = 44/456 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LML+ G+IH  S G Y  LP   +A++ +
Sbjct: 42  LSRMFQPQKLREDQVLSLEGRSGDLTCKSQRLMLQMGLIHPASPGCYHLLPYTVRAMEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+DS G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQTIGGQKVNMPSLSPAELWRATKRWDSMGRELLRLRDRHGKDYCLGPTHEEA 161

Query: 114 MTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S    SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 162 ITALVASQKTLSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQL 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y+ +  +Y  +F+RLGL+ I ++A+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYSLVCDAYSSLFNRLGLRCIKVQADVGSIGGMVSHEFQLPVDVGEDRLVVCPSCHF--- 278

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            S N +  D    N    Q                            +GIEVGH FY GT
Sbjct: 279 -SANMETLDSSRTNCPACQGPLTET----------------------KGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F    GK    +MG YG+G  R++AA IE       + WP  +AP+++ LI
Sbjct: 316 KYSSIFNAQFINVHGKPSLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPGLLAPYQVCLI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    ++   +    +Y  +++       +V  DD     IG++   A+ LG+P  +I
Sbjct: 376 PPKKGSKEEAAAELAGDLYNHITEAVPQLQGEVLLDDRTHLTIGNRLKDANKLGYPFVII 435

Query: 406 VGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYASH 440
              + + D    E+  + TG    ++ E V+   S 
Sbjct: 436 AAKRALDDPAHFEVWCQNTGEVVFLTREGVLELLSQ 471


>gi|294636227|ref|ZP_06714641.1| threonine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291090484|gb|EFE23045.1| threonine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 622

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKAYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNSCIKMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                 P E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEIWDRAEEDLAAALEENGIPFEYQPGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  ++A++
Sbjct: 448 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLNASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP +  ++NI       
Sbjct: 478 VGENNERVVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQAVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 AEYVEELNKKLQAAGIRAKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS+++VI        + 
Sbjct: 592 RGKDLGVMSIDDVIEKLLQEIRSR 615


>gi|167037181|ref|YP_001664759.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115599|ref|YP_004185758.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856015|gb|ABY94423.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928690|gb|ADV79375.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 634

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENMY-FTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA           +        +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSMGSDEDWELATNALISALNRVNLPYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SDKHYA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLSEFIEKILKEIATK 632


>gi|323968488|gb|EGB63894.1| threonyl-tRNA synthetase [Escherichia coli M863]
          Length = 642

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G   IW   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPIW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|261821451|ref|YP_003259557.1| threonyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261605464|gb|ACX87950.1| threonyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 642

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 156/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + Y   + + + RD      +L L    + + + G+  W   G      + A +R + 
Sbjct: 228 QLASYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    +W ++G +++Y + M   +  N +     P +      IF   
Sbjct: 286 KSYQYQEVKGPFMMDRVMWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S E    A+          +      P E   + 
Sbjct: 404 VYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAAALTENNIEFAYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++ G   +    V +    +G+M     ++     G    W   +AP ++ ++NI   
Sbjct: 494 NASYVGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DSQADYVNELTQKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + + EVI+       + 
Sbjct: 608 VRTRRGKDLGSLDVSEVISKLLQEIRSR 635


>gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074079|gb|ADJ63478.1| threonyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 635

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 156/445 (35%), Gaps = 43/445 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R          + G+  W P G      V   +R   
Sbjct: 229 EAYLHMLEE----AEKRDHRKLGRALDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +++Y + M      N +A    P +      IF S 
Sbjct: 285 QDNGYQEVKAPQILDRSLWEKTGHWENYRENMFTTESEN-RAYALKPMNCPGHIQIFNSG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP  + +     R+E      G+MR R F   D + F  T +  +         
Sbjct: 344 LHSYRDLPLRYGEFGQCHRNEPSGALHGMMRVRGFTQDDGHIF-CTEDQIQEEVAAFNRV 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K + ++    P     + E    A+    +   +       +P E   + 
Sbjct: 403 VREVYDCFGFKEVAVKLALRPEKRIGAEEVWDKAENALREAIRASGSEWEELPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I                       L DS+  + +     ++       G +Y      
Sbjct: 463 PKIEY--------------------HLKDSIGRSWQCGTMQVDFSMPARLGAEY------ 496

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                + +   V +    +G++    A++  +H G   +W   +AP ++ ++NI      
Sbjct: 497 -VTEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLW---LAPTQVVILNI---SDA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +   L K G  V  D   E+I  +     +   P  ++VG K    + V ++ 
Sbjct: 550 QADYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKERDANTVAVRA 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       MS++ ++       +  
Sbjct: 610 RGNVDLGVMSIDTLVERLKDEVAAK 634


>gi|227111545|ref|ZP_03825201.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 642

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + Y   + + + RD      +L L    + + + G+  W   G      + A +R + 
Sbjct: 228 QLASYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    +W ++G +++Y + M   +  N +     P +      IF   
Sbjct: 286 KSYQYQEVKGPFMMDRVMWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S E    A+          +      P E   + 
Sbjct: 404 VYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAAALTENNIEFAYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++ G   +    V +    +G+M     ++     G    W   +AP +  +INI   
Sbjct: 494 NASYVGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQAVIINIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DSQSDYVNELTRKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M + EVI+       + 
Sbjct: 608 VRTRRGKDLGSMDVSEVISKLQQEIRSR 635


>gi|71282219|ref|YP_269610.1| threonyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|123747383|sp|Q480A9|SYT_COLP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71147959|gb|AAZ28432.1| threonyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 636

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 163/452 (36%), Gaps = 49/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K ++  L     +AE   H+ + +T  + H    + G+  W   G      +   IR
Sbjct: 227 KQLKAYIVRL----AEAEKRDHRKIGKTLDLFHWQEEAPGMVFWHNDGWTIYTELEKFIR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+ +     E+  P +    LW +SG +D Y   M        +     P +      IF
Sbjct: 283 EKLHEYDYDEVKAPMMMDRSLWEKSGHWDKYADGMFTTTSEK-REYAIKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F +     +    K 
Sbjct: 342 NQGLKSYRDLPLRIAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCM-ESQVQAEVKKC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G + + ++  + P     S E    A+ G  Q     +     +P E  
Sbjct: 401 IEMVYDVYGSFGFEDVVVKLSTRPDNRIGSDEIWDKAEAGLAQALTDSNIAFEYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I    +                               R  + G +      ++LP
Sbjct: 461 FYGPKIEFTLMDC---------------------------LGRAWQCGTV---QLDFALP 490

Query: 298 --MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+ G D +    V +    +G++     ++     GK   W   ++P + +++NI
Sbjct: 491 ERLGATYVGEDNERYTPVMIHRAILGSLERFIGILIEEFTGKFPTW---LSPIQTTIMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                     CEK+  +L + G     D   E+IG +     L   P  ++VG K +   
Sbjct: 548 TDK---QAPYCEKVVKKLKENGFRAKIDLRNEKIGFKIREHTLKRVPYLLVVGDKEMESG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ ++ R       MS+++ I   S    + +
Sbjct: 605 EISVRTRSGEDLGKMSVDDFIAKLSDEVKSRQ 636


>gi|307131177|ref|YP_003883193.1| threonyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306528706|gb|ADM98636.1| threonyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 642

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 152/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S Y   + +   RD      +L L    + + + G+  W   G      + A +R + 
Sbjct: 228 QLSAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G +++Y + M   +  N +     P +      IF   
Sbjct: 286 KEYQYQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S +    A+                 P E   + 
Sbjct: 404 VYDMYSTFGFEKIVVKLSTRPEKRIGSDDMWDRAEEDLAAALTENGIPFDYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           SA++ G + +    V +    +G+M     ++     G    W   +AP +  ++NI   
Sbjct: 494 SASYVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DTQSDYVSELTRKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + + EVI        + 
Sbjct: 608 VRTRRGKDLGSLDVSEVITKLQEEIRSR 635


>gi|82777067|ref|YP_403416.1| threonyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|123755748|sp|Q32FI0|SYT_SHIDS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81241215|gb|ABB61925.1| threonine tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 642

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SDYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKELGSMDVNEVIEKLQQEIRSR 635


>gi|148698861|gb|EDL30808.1| prolyl-tRNA synthetase (mitochondrial)(putative), isoform CRA_a
           [Mus musculus]
 gi|148698862|gb|EDL30809.1| prolyl-tRNA synthetase (mitochondrial)(putative), isoform CRA_a
           [Mus musculus]
          Length = 475

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 148/455 (32%), Positives = 227/455 (49%), Gaps = 44/455 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 42  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S  K SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 162 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHEFQLPVDIGEDRL----------- 270

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          +V       A T  +   +      +      +GIEVGH FY GT
Sbjct: 271 ---------------VVCPSCHFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 316 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    +    +  EK+Y  + +       +V  DD     IG++   A+ LG+P  +I
Sbjct: 376 PPKKGSKETAATEIVEKLYDDVMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVII 435

Query: 406 VGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYAS 439
            G + + D    E+  + TG    ++ E V+   +
Sbjct: 436 AGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 470


>gi|28211884|ref|NP_782828.1| threonyl-tRNA synthetase [Clostridium tetani E88]
 gi|73919782|sp|Q891T0|SYT_CLOTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28204327|gb|AAO36765.1| threonyl-tRNA synthetase [Clostridium tetani E88]
          Length = 639

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 168/450 (37%), Gaps = 44/450 (9%)

Query: 1   MRRSKY--FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           +++S+   +L +L+E  R D      +L L T  I++   G   + P G    + +    
Sbjct: 223 LKKSELEAYLKMLEEAKRRDHRKLGKELDLFT--INEEGPGFPFFHPKGMVVRNILENFW 280

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           RE+  + G  E+  P + + +LW  SG +D Y + M      +++     P +      +
Sbjct: 281 REKHTKAGYDEIRTPVILNEELWHRSGHWDHYKENMY-FTKIDNENFAIKPMNCPGSILV 339

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++SH+ SY+  P    ++ L  R EL     G+MR R F   DA+ F +T E  K     
Sbjct: 340 YKSHLHSYKEFPMRLGELGLVHRHELSGALHGLMRVRCFTQDDAHIF-MTKEQIKDEILN 398

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +       +   G +   +   + P     S E   +A  G                 + 
Sbjct: 399 VIKLIDSFYKVFGFEYF-VELSTRPEDSMGSDEDWEVATNGLKNALEGAGLEYKINEGDG 457

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I                               K    R  + G I     +   
Sbjct: 458 AFYGPKIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPE 489

Query: 297 PMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG+ H   M      G++     ++     G    W   +AP ++ ++ I 
Sbjct: 490 RFDLTYVGQDGEKHRPVMVHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVMTIT 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 +D   K+   L + G  V +DD  E+IG +   A L   P  +I+G K VS++K
Sbjct: 547 ---DSQKDYANKVVNDLKEKGIRVEFDDRNEKIGYKIREAQLQKVPYMIILGDKEVSENK 603

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R  G    +SL+E +   ++   N 
Sbjct: 604 VAVRSRKEGDLGAISLKEFVAKLNYEIDNR 633


>gi|332306910|ref|YP_004434761.1| threonyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174239|gb|AEE23493.1| threonyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 638

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 164/452 (36%), Gaps = 49/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   + H    + G+  W   G      +   +R
Sbjct: 227 KQLKAYLNRLEE----AEKRDHRKIGKALDLFHWQEEAPGMVFWHNDGWSIYTELEKFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +       E+  P +    LW +SG +D Y + M        +     P +      IF
Sbjct: 283 SKLREYEYQEVKAPLMMDRSLWEKSGHWDKYAENMFTTTSEK-REYAVKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +         
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILAEVGGC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             S   I+   G ++I ++  + P     S E    A+    +   SK      +P E  
Sbjct: 401 IDSVYEIYKIFGFENISVKLSTRPEKRVGSDEVWDKAEKELAEALTSKGIDFQYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      +S+P
Sbjct: 461 FYGPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSMP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + +T+   DG+    V +    +G++     ++   + G   +W   +AP +  ++NI
Sbjct: 491 GRLGSTYVAEDGERKVPVMIHRAILGSLERFIGILIEEYSGFFPLW---LAPTQAVVMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +     +  +K+  +L ++G     D   E+IG +     L   P  ++VG K +   
Sbjct: 548 TDNQS---EYAQKVVKKLKEIGIRAKSDLRNEKIGFKIREHTLRRVPYLLVVGDKEIEAG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ ++ R       MS++  I  A  +  + +
Sbjct: 605 EIAVRSRKGDDLGKMSVDAFIELACEQIKSKQ 636


>gi|157158126|ref|YP_001463015.1| threonyl-tRNA synthetase [Escherichia coli E24377A]
 gi|157161181|ref|YP_001458499.1| threonyl-tRNA synthetase [Escherichia coli HS]
 gi|170019932|ref|YP_001724886.1| threonyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|193068904|ref|ZP_03049863.1| threonyl-tRNA synthetase [Escherichia coli E110019]
 gi|209919078|ref|YP_002293162.1| threonyl-tRNA synthetase [Escherichia coli SE11]
 gi|218695280|ref|YP_002402947.1| threonyl-tRNA synthetase [Escherichia coli 55989]
 gi|256018088|ref|ZP_05431953.1| threonyl-tRNA synthetase [Shigella sp. D9]
 gi|332279130|ref|ZP_08391543.1| threonyl-tRNA synthetase [Shigella sp. D9]
 gi|166987321|sp|A7ZMI6|SYT_ECO24 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987322|sp|A8A0R2|SYT_ECOHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083607|sp|B1IPK9|SYT_ECOLC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238065113|sp|B6IBD7|SYT_ECOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783522|sp|B7L6J2|SYT_ECO55 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157066861|gb|ABV06116.1| threonyl-tRNA synthetase [Escherichia coli HS]
 gi|157080156|gb|ABV19864.1| threonyl-tRNA synthetase [Escherichia coli E24377A]
 gi|169754860|gb|ACA77559.1| threonyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|192957699|gb|EDV88143.1| threonyl-tRNA synthetase [Escherichia coli E110019]
 gi|209912337|dbj|BAG77411.1| threonyl-tRNA synthase [Escherichia coli SE11]
 gi|218352012|emb|CAU97745.1| threonyl-tRNA synthetase [Escherichia coli 55989]
 gi|320197902|gb|EFW72510.1| Threonyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|323948091|gb|EGB44082.1| threonyl-tRNA synthetase [Escherichia coli H120]
 gi|324016472|gb|EGB85691.1| threonyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|332101482|gb|EGJ04828.1| threonyl-tRNA synthetase [Shigella sp. D9]
          Length = 642

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SDYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|37680129|ref|NP_934738.1| threonyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|37198875|dbj|BAC94709.1| threonyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 655

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 156/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IRE+
Sbjct: 241 KALKDHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIREK 298

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 299 LTEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 357

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 358 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQDEVTNCIK 416

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S D        E   +
Sbjct: 417 MVYDTYQTFGFDNIAVKLSTRPEQRVGSDEIWDQSEEALKQALESMDIAYEIQEGEGAFY 476

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 477 GPKIEFTLFDC---------------------------LGRAWQCGTV---QLDFNLPNR 506

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 507 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVIMNITD 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  ++I  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 564 K---QADYVQEIAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEI 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ ++Y   + ++ +
Sbjct: 621 AVRTRKGNDLGKFKVDDFVSYIQDQIASRK 650


>gi|271500480|ref|YP_003333505.1| threonyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270344035|gb|ACZ76800.1| threonyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 642

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 152/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S Y   + +   RD      +L L    + + + G+  W   G      + A +R + 
Sbjct: 228 QLSAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G +++Y + M   +  N +     P +      IF   
Sbjct: 286 KEYQYQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCVKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S +    A+                 P E   + 
Sbjct: 404 VYDMYSTFGFEKIVVKLSTRPEKRIGSDDMWDRAEEDLAAALTENAIPFEYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           SA++ G + +    V +    +G+M     ++     G    W   +AP +  ++NI   
Sbjct: 494 SASYVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DSQSDYVSELTRKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M + EVI        + 
Sbjct: 608 VRTRRGKDLGSMDVSEVITKLQEEIRSR 635


>gi|82543879|ref|YP_407826.1| threonyl-tRNA synthetase [Shigella boydii Sb227]
 gi|187734126|ref|YP_001880509.1| threonyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|123769450|sp|Q321L0|SYT_SHIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689503|sp|B2U397|SYT_SHIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81245290|gb|ABB65998.1| threonine tRNA synthetase [Shigella boydii Sb227]
 gi|187431118|gb|ACD10392.1| threonyl-tRNA synthetase [Shigella boydii CDC 3083-94]
          Length = 642

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|310767522|gb|ADP12472.1| threonyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 642

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRIEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N         
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDT 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    ++          D      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWDRSEADLAAALKENDIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  ++A++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLNASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G   +    V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VGESNERQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNITDGQS-- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 553 -EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + E I        + 
Sbjct: 612 RGKDLGSIDVNEAIAKLQDEIRSR 635


>gi|325265785|ref|ZP_08132472.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982768|gb|EGC18393.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 637

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 162/449 (36%), Gaps = 46/449 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L        +AE   H+ + R      +   + G+  W P G      +   +R 
Sbjct: 223 ASKDELKAYITRIEEAEKRDHRKLGRQLDLFHLQDEAPGMVFWHPRGWTLWQVIEQHMRR 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E +  G  E+  P +     W +SG + +Y   M  L     +     P +      IF 
Sbjct: 283 ELDAAGYREVKTPQIMDKTFWEKSGHWANYKDNMF-LTASEKREYAVKPMNCPGHVQIFN 341

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + ++SYR+LP    +     R+E      G+MR R F+  DA+ F  T +       K  
Sbjct: 342 NTLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIAEETRKFN 400

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  ++I+ + G + + ++    P     S E    A+ G      +       +P E   
Sbjct: 401 LLVMKIYQQFGFEHVSVKLSLRPEQRAGSDEIWDKAEQGLRDALTACGVEWQELPGEGAF 460

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               K    R  + G I      + LP 
Sbjct: 461 YGPKVEY---------------------------HIKDALGRSWQCGTI---QLDFVLPE 490

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A +   D  K   V +    +G++     ++   H G   +W   +AP ++ ++NI 
Sbjct: 491 RLDAEYVAEDNSKKRPVMLHRAILGSLERFIGILIEEHAGSFPLW---LAPVQMVVMNIT 547

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   D C ++  +L   G     D   E+IG +      + +P Q++VG K + + +
Sbjct: 548 ---EKQADYCREVVEKLKAAGFRAEADLRNEKIGYKIRDNSQMRYPYQIVVGDKEMENGQ 604

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V ++ R       M +E+ I       ++
Sbjct: 605 VAVR-RKGEDLGSMKVEDFIALLQKEIAD 632


>gi|56749447|sp|Q7MK65|SYT_VIBVY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 156/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IRE+
Sbjct: 228 KALKDHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LTEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQDEVTNCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S D        E   +
Sbjct: 404 MVYDTYQTFGFDNIAVKLSTRPEQRVGSDEIWDQSEEALKQALESMDIAYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTLFDC---------------------------LGRAWQCGTV---QLDFNLPNR 493

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 494 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVIMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  ++I  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 551 K---QADYVQEIAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ ++Y   + ++ +
Sbjct: 608 AVRTRKGNDLGKFKVDDFVSYIQDQIASRK 637


>gi|260777881|ref|ZP_05886774.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605894|gb|EEX32179.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IR +
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LDEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   + +        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLEAMNIEYELQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   + +    V +    +G++     ++   + G    W   ++P +  ++NI  
Sbjct: 494 LGATYVDENNERQVPVMIHRAILGSLERFIGILIEEYFGFFPTW---LSPEQAVIMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 551 KQS---DYAQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I+Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKVDDFISYIQDEISSRK 637


>gi|227327045|ref|ZP_03831069.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + + + RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKSYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    +W ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVMWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAAALTENNIEFAYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  ++A++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLNASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G   +    V +    +G+M     ++     G    W   +AP +  +INI       
Sbjct: 498 VGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQAVIINIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SDYVNELTRKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVETGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI+       + 
Sbjct: 612 RGKDLGSMDVSEVISKLQQEIRSR 635


>gi|259908578|ref|YP_002648934.1| threonyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224964200|emb|CAX55707.1| Threonyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283478547|emb|CAY74463.1| thrS [Erwinia pyrifoliae DSM 12163]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRIEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N         
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDT 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    ++          D      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWDRSEADLAAALKENDIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  ++A++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLNASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G   +    V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VGESNERQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNITDGQS-- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 553 -EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + E I        + 
Sbjct: 612 RGKDLGSIDVNEAIAKLQDEIRSR 635


>gi|90579635|ref|ZP_01235444.1| threonyl-tRNA synthetase [Vibrio angustum S14]
 gi|90439209|gb|EAS64391.1| threonyl-tRNA synthetase [Vibrio angustum S14]
          Length = 643

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 94/450 (20%), Positives = 162/450 (36%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G      +   IRE+
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LNEYDYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEAQVQQEVTSCIE 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S     + D  E+ +  + + M+ P        
Sbjct: 404 MVYDTYKTFGFDNIVVKLSTRPEKRVGSD---AMWDKAESDLITALESMEIPFE------ 454

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                   I E   A Y    +       D          R  + G +      ++LP  
Sbjct: 455 --------IQEGEGAFYGPKIEFTLHDCLD----------RAWQCGTV---QLDFALPER 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G D + H  V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 494 LGATYVGEDNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTW---LAPQQAVVMNIT- 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++I  +L K G  V  D   E+IG +     L   P  ++ G K V    V
Sbjct: 550 --DAQSEYVQEIVEKLKKCGIRVNADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGVV 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         ++E++ +     S+ +
Sbjct: 608 AVRTRKGKDLGKFKIDELVAFMQEEISSRK 637


>gi|291614198|ref|YP_003524355.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584310|gb|ADE11968.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 637

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 151/441 (34%), Gaps = 44/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD      +L L    +   + G+  W P G      +   +R      G
Sbjct: 231 YLVRLEEAEKRDHRKLGKQLDLF--HMQDEAPGMVFWHPKGWAMWQVIEQYMRAVYRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG ++ Y   M              P +      +F + ++SY
Sbjct: 289 YHEIRCPQIIDRVLWEKSGHWEHYKANMFTTESEK-HDYAIKPMNCPGHVQVFNADLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F+  D + F  T E  +          L++
Sbjct: 348 RELPLRYGEFGSCHRNEPSGGLHGLMRVRGFVQDDGHIF-CTEEQIESEVKAFNTLVLKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P G   S E    ++        +       +P E   +   I 
Sbjct: 407 YKDFGFHDVVVKLALRPEGRVGSDEIWDKSENALRAALRASGMDWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      +S+P  + A F
Sbjct: 467 F---------------------------HIKDAIGRSWQCGTI---QVDFSMPGRLGAEF 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    Q  
Sbjct: 497 VDEDNTRKVPVMLHRAILGSLERFIGILVENHAGALPLW---LAPVQMVVMNI---SQAQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   K+   L   G  V  D   E+I  +     L   P Q+I+G K V+   V ++ R
Sbjct: 551 EEYAGKVAQTLRASGFRVQSDLRNEKITYKIREHSLQKLPYQLIIGDKEVAAGLVAVRSR 610

Query: 422 LTGIREDMSLEEVINYASHRF 442
                  MS++ +I       
Sbjct: 611 TGEDLGQMSVDALIQRLQAEL 631


>gi|197284912|ref|YP_002150784.1| threonyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227355315|ref|ZP_03839716.1| threonyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|238693141|sp|B4ETK6|SYT_PROMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194682399|emb|CAR42252.1| threonyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227164539|gb|EEI49410.1| threonyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 153/449 (34%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    + + + G+  W   G      +   +R +
Sbjct: 227 KQLKAYLERLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRCK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G +++Y + M   +  N +     P +      IF+ 
Sbjct: 285 LKEYDYQEVKGPFMMDRVLWEKTGHWENYKENMFTTSSEN-REYCIKPMNCPGHVQIFKQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP    +     R+E      G+MR R F   DA+ F  T E      N    
Sbjct: 344 GLRSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQILSEVNNCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G + I ++  + P           +A+T   +     +      P E   +
Sbjct: 403 LIYDVYSTFGFEKIVVKLSTRPEKRIGEDALWDIAETDLAKALTDNNIEFEYQPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      +SLP  
Sbjct: 463 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFSLPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A++   + +    V +    +G++     ++   + G    W   +AP ++ ++NI  
Sbjct: 493 LGASYVAENNERKVPVMLHRAVLGSLERFIGILTEEYAGFFPTW---LAPQQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +K+   L   G     D   E+IG +     L   P  ++ G K V   KV
Sbjct: 550 G---QADYVQKLVKELQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       + + +          + 
Sbjct: 607 AVRTRRGKDLGSIDVNDFKEKLLQEIRSR 635


>gi|324119204|gb|EGC13092.1| threonyl-tRNA synthetase [Escherichia coli E1167]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|27365716|ref|NP_761244.1| threonyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|31340449|sp|Q8DA13|SYT_VIBVU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27361865|gb|AAO10771.1| threonyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 156/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IRE+
Sbjct: 228 KALKDHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LTEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQDEVTNCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S D        E   +
Sbjct: 404 MVYDTYQTFGFDNIAVKLSTRPEQRVGSDEIWDQSEEALKQALESMDIAYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTLFDC---------------------------LGRAWQCGTV---QLDFNLPNR 493

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 494 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVIMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  ++I  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 551 K---QADYVQEIAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ ++Y   + ++ +
Sbjct: 608 AVRTRKGNDLGKFKVDDFVSYIQDQIASRK 637


>gi|307310711|ref|ZP_07590357.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|331647210|ref|ZP_08348304.1| threonine--tRNA ligase [Escherichia coli M605]
 gi|331673269|ref|ZP_08374037.1| threonine--tRNA ligase [Escherichia coli TA280]
 gi|281178789|dbj|BAI55119.1| threonyl-tRNA synthetase [Escherichia coli SE15]
 gi|306908889|gb|EFN39385.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|315061024|gb|ADT75351.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|315299748|gb|EFU58988.1| threonyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|323378405|gb|ADX50673.1| threonyl-tRNA synthetase [Escherichia coli KO11]
 gi|330911523|gb|EGH40033.1| threonyl-tRNA synthetase [Escherichia coli AA86]
 gi|331043993|gb|EGI16129.1| threonine--tRNA ligase [Escherichia coli M605]
 gi|331069467|gb|EGI40854.1| threonine--tRNA ligase [Escherichia coli TA280]
 gi|332343438|gb|AEE56772.1| threonyl-tRNA synthetase ThrS [Escherichia coli UMNK88]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SDYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|90021224|ref|YP_527051.1| threonyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123090560|sp|Q21KE0|SYT_SACD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89950824|gb|ABD80839.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Saccharophagus
           degradans 2-40]
          Length = 636

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 160/446 (35%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      K  L    I + + G+  W P G      +   +RE Q  
Sbjct: 229 KAYVHRLEEAEKRDHRKLGKKFDLF--HIQEEAPGMVFWHPNGWSIYTAIEEYMREVQRL 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D +   M  +   + +     P +      +F   +K
Sbjct: 287 NGYEEIKTPQVVDRSLWERSGHWDKFRDNMFTVESES-RDYAVKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  +    +   +       
Sbjct: 346 SYRDLPLRLAEFGCCHRNEASGTLQGLMRVRGFVQDDAHIF-CSESMIQDEVSVFTDLLF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G + + +R  + P     S E    A+   +    +K      +P E   +   
Sbjct: 405 KVYKDFGFEDVIIRLSTRPEQRVGSDEVWDKAEKALSDALDAKGLPWQLLPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G I      +S+P  + A
Sbjct: 465 IEFSL---------------------------KDCLGRVWQCGTI---QVDFSMPGRLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F   DG     V +    +G+      ++   ++G    W   +AP +  L+NI  +  
Sbjct: 495 QFVAEDGSRQVPVMLHRAILGSFERFIGILIEEYEGAFPAW---LAPTQAVLLNITDN-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +K+   L   G  V  D   E+IG +     +   P  ++VG + V ++ V ++
Sbjct: 550 -QAEYVKKVENSLKNKGFRVNSDLRNEKIGFKIREHTIQKVPYLLVVGDQEVENNSVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M+++        + S+ 
Sbjct: 609 GRGGEDLGVMTVDAFTALLEEQISSK 634


>gi|153835364|ref|ZP_01988031.1| threonyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148868112|gb|EDL67276.1| threonyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 155/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +R +
Sbjct: 228 KALKAHLTRLEEAAKRDHRKLGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRSK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LDEYGYQEVKGPLIMDRVLWERSGHWDKYADAMFTTSSEN-REYALKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTNCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S +        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLESMEIPYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  L+NI  
Sbjct: 494 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAILMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++  +L K G     D   E+IG +     L   P  ++VG + +   ++
Sbjct: 551 KQS---DYVQEVVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKVDDFIAYIQDEISSRK 637


>gi|253688275|ref|YP_003017465.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259516611|sp|C6DFY6|SYT_PECCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|251754853|gb|ACT12929.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + Y   + +   RD      +L L    + + + G+  W   G      + A +R + 
Sbjct: 228 QLASYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    +W ++G +++Y + M   +  N +     P +      IF   
Sbjct: 286 KSYQYQEVKGPFMMDRVMWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S E    A+          +      P E   + 
Sbjct: 404 VYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAAALTENNIEFDYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++ G   +    V +    +G+M     ++     G    W   +AP ++ ++NI   
Sbjct: 494 NASYVGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DTQSDYVNELTRKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + + EVI+       + 
Sbjct: 608 VRTRRGKDLGSLDVSEVISKLQQEIRSR 635


>gi|193065767|ref|ZP_03046830.1| threonyl-tRNA synthetase [Escherichia coli E22]
 gi|194428543|ref|ZP_03061082.1| threonyl-tRNA synthetase [Escherichia coli B171]
 gi|218554286|ref|YP_002387199.1| threonyl-tRNA synthetase [Escherichia coli IAI1]
 gi|260844071|ref|YP_003221849.1| threonyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260855585|ref|YP_003229476.1| threonyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260868246|ref|YP_003234648.1| threonyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|293446093|ref|ZP_06662515.1| threonyl-tRNA synthetase [Escherichia coli B088]
 gi|331668404|ref|ZP_08369252.1| threonine--tRNA ligase [Escherichia coli TA271]
 gi|331677592|ref|ZP_08378267.1| threonine--tRNA ligase [Escherichia coli H591]
 gi|226701402|sp|B7M1C7|SYT_ECO8A RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|192926539|gb|EDV81170.1| threonyl-tRNA synthetase [Escherichia coli E22]
 gi|194413421|gb|EDX29704.1| threonyl-tRNA synthetase [Escherichia coli B171]
 gi|195182909|dbj|BAG66479.1| threonyl-tRNA synthetase [Escherichia coli O111:H-]
 gi|218361054|emb|CAQ98632.2| threonyl-tRNA synthetase [Escherichia coli IAI1]
 gi|257754234|dbj|BAI25736.1| threonyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257759218|dbj|BAI30715.1| threonyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257764602|dbj|BAI36097.1| threonyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|291322923|gb|EFE62351.1| threonyl-tRNA synthetase [Escherichia coli B088]
 gi|323153043|gb|EFZ39312.1| threonyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|331063598|gb|EGI35509.1| threonine--tRNA ligase [Escherichia coli TA271]
 gi|331074052|gb|EGI45372.1| threonine--tRNA ligase [Escherichia coli H591]
          Length = 642

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|327252835|gb|EGE64489.1| threonyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 622

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G   IW   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPIW---LAPVQVVIMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKDLGSMDVNEVIEKLQQEIRSR 615


>gi|320156122|ref|YP_004188501.1| threonyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319931434|gb|ADV86298.1| threonyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 642

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IRE+    G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIREKLAEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQDEVTNCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E    ++    Q   S D        E   +   I  
Sbjct: 410 QTFGFDNIAVKLSTRPEQRVGSDEIWDQSEEALKQALESMDIAYEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLFDC---------------------------LGRAWQCGTV---QLDFNLPNRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G + +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVIMNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  ++I  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYVQEIAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   +++ ++Y   + ++ +
Sbjct: 614 GNDLGKFKVDDFVSYIQDQIASRK 637


>gi|73919762|sp|Q8CFI5|SYPM_MOUSE RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|24416455|gb|AAH38817.1| Prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 475

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 148/455 (32%), Positives = 227/455 (49%), Gaps = 44/455 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 42  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S  K SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 162 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYGLVCDAYCRLFDRLGLRWMKARADVGSIGGTMSHEFQLPVDIGEDRL----------- 270

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          +V       A T  +   +      +      +GIEVGH FY GT
Sbjct: 271 ---------------VVCPSCHFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 316 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    +    +  EK+Y  + +       +V  DD     IG++   A+ LG+P  +I
Sbjct: 376 PPKKGSKETAATEIVEKLYDDVMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVII 435

Query: 406 VGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYAS 439
            G + + D    E+  + TG    ++ E V+   +
Sbjct: 436 AGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 470


>gi|43066|emb|CAA23560.1| unnamed protein product [Escherichia coli]
          Length = 642

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|16129675|ref|NP_416234.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24112885|ref|NP_707395.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|26247970|ref|NP_754010.1| threonyl-tRNA synthetase [Escherichia coli CFT073]
 gi|30063014|ref|NP_837185.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|74311961|ref|YP_310380.1| threonyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|89108559|ref|AP_002339.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|91210933|ref|YP_540919.1| threonyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110641840|ref|YP_669570.1| threonyl-tRNA synthetase [Escherichia coli 536]
 gi|110805471|ref|YP_688991.1| threonyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|117623893|ref|YP_852806.1| threonyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|170081377|ref|YP_001730697.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680212|ref|YP_001743530.1| threonyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188492265|ref|ZP_02999535.1| threonyl-tRNA synthetase [Escherichia coli 53638]
 gi|191171752|ref|ZP_03033299.1| threonyl-tRNA synthetase [Escherichia coli F11]
 gi|194435142|ref|ZP_03067376.1| threonyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194438580|ref|ZP_03070669.1| threonyl-tRNA synthetase [Escherichia coli 101-1]
 gi|215486938|ref|YP_002329369.1| threonyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218558588|ref|YP_002391501.1| threonyl-tRNA synthetase [Escherichia coli S88]
 gi|218689663|ref|YP_002397875.1| threonyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218699714|ref|YP_002407343.1| threonyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218705218|ref|YP_002412737.1| threonyl-tRNA synthetase [Escherichia coli UMN026]
 gi|237705668|ref|ZP_04536149.1| threonyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238900934|ref|YP_002926730.1| threonyl-tRNA synthetase [Escherichia coli BW2952]
 gi|253773326|ref|YP_003036157.1| threonyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161779|ref|YP_003044887.1| threonyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|256022617|ref|ZP_05436482.1| threonyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|293405218|ref|ZP_06649210.1| threonyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|293410035|ref|ZP_06653611.1| threonyl-tRNA synthetase [Escherichia coli B354]
 gi|293415037|ref|ZP_06657680.1| threonyl-tRNA synthetase [Escherichia coli B185]
 gi|297517244|ref|ZP_06935630.1| threonyl-tRNA synthetase [Escherichia coli OP50]
 gi|298380861|ref|ZP_06990460.1| threonyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300938947|ref|ZP_07153648.1| threonyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300987614|ref|ZP_07178286.1| threonyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300994418|ref|ZP_07180923.1| threonyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|301017728|ref|ZP_07182383.1| threonyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301025270|ref|ZP_07188835.1| threonyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|306815028|ref|ZP_07449184.1| threonyl-tRNA synthetase [Escherichia coli NC101]
 gi|307138378|ref|ZP_07497734.1| threonyl-tRNA synthetase [Escherichia coli H736]
 gi|312966921|ref|ZP_07781139.1| threonyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|331642316|ref|ZP_08343451.1| threonine--tRNA ligase [Escherichia coli H736]
 gi|331653119|ref|ZP_08354124.1| threonine--tRNA ligase [Escherichia coli M718]
 gi|67473036|sp|P0A8M3|SYT_ECOLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67473037|sp|P0A8M4|SYT_ECOL6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67473038|sp|P0A8M5|SYT_SHIFL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122957455|sp|Q0T4S9|SYT_SHIF8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123084457|sp|Q1RB76|SYT_ECOUT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123343967|sp|Q0THB0|SYT_ECOL5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123732358|sp|Q3Z267|SYT_SHISS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223339|sp|A1ABQ2|SYT_ECOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701400|sp|B7MAS9|SYT_ECO45 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701401|sp|B7NT58|SYT_ECO7I RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701403|sp|B7N556|SYT_ECOLU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701404|sp|B1LE12|SYT_ECOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229557979|sp|B1XGI1|SYT_ECODH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783521|sp|B7USA2|SYT_ECO27 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783523|sp|B7MVJ7|SYT_ECO81 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516437|sp|C4ZYI1|SYT_ECOBW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|5107656|pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
           With Its Cognate Trna
 gi|26108373|gb|AAN80575.1|AE016761_150 Threonyl-tRNA synthetase [Escherichia coli CFT073]
 gi|1742811|dbj|BAA15498.1| threonyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|1788013|gb|AAC74789.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24051829|gb|AAN43102.1| threonine tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30041263|gb|AAP16992.1| threonine tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|73855438|gb|AAZ88145.1| threonine tRNA synthetase [Shigella sonnei Ss046]
 gi|91072507|gb|ABE07388.1| threonyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110343432|gb|ABG69669.1| threonyl-tRNA synthetase [Escherichia coli 536]
 gi|110615019|gb|ABF03686.1| threonine tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|115513017|gb|ABJ01092.1| threonine tRNA synthetase [Escherichia coli APEC O1]
 gi|169889212|gb|ACB02919.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170517930|gb|ACB16108.1| threonyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188487464|gb|EDU62567.1| threonyl-tRNA synthetase [Escherichia coli 53638]
 gi|190908082|gb|EDV67674.1| threonyl-tRNA synthetase [Escherichia coli F11]
 gi|194416606|gb|EDX32741.1| threonyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194422590|gb|EDX38588.1| threonyl-tRNA synthetase [Escherichia coli 101-1]
 gi|215265010|emb|CAS09396.1| threonyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218365357|emb|CAR03078.1| threonyl-tRNA synthetase [Escherichia coli S88]
 gi|218369700|emb|CAR17469.1| threonyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218427227|emb|CAR08113.2| threonyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218432315|emb|CAR13205.1| threonyl-tRNA synthetase [Escherichia coli UMN026]
 gi|222033474|emb|CAP76215.1| Threonyl-tRNA synthetase [Escherichia coli LF82]
 gi|226900425|gb|EEH86684.1| threonyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238863657|gb|ACR65655.1| threonyl-tRNA synthetase [Escherichia coli BW2952]
 gi|242377442|emb|CAQ32194.1| threonyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253324370|gb|ACT28972.1| threonyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973680|gb|ACT39351.1| threonyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253977874|gb|ACT43544.1| threonyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|260449158|gb|ACX39580.1| threonyl-tRNA synthetase [Escherichia coli DH1]
 gi|281600917|gb|ADA73901.1| Threonyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|284921639|emb|CBG34711.1| threonyl-tRNA synthetase [Escherichia coli 042]
 gi|291427426|gb|EFF00453.1| threonyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|291432685|gb|EFF05664.1| threonyl-tRNA synthetase [Escherichia coli B185]
 gi|291470503|gb|EFF12987.1| threonyl-tRNA synthetase [Escherichia coli B354]
 gi|294493274|gb|ADE92030.1| threonyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|298278303|gb|EFI19817.1| threonyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|299880135|gb|EFI88346.1| threonyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300306094|gb|EFJ60614.1| threonyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300400020|gb|EFJ83558.1| threonyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300406264|gb|EFJ89802.1| threonyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300456146|gb|EFK19639.1| threonyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|305851676|gb|EFM52129.1| threonyl-tRNA synthetase [Escherichia coli NC101]
 gi|307553740|gb|ADN46515.1| threonine tRNA synthetase [Escherichia coli ABU 83972]
 gi|307626794|gb|ADN71098.1| threonyl-tRNA synthetase [Escherichia coli UM146]
 gi|309701942|emb|CBJ01255.1| threonyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|312288385|gb|EFR16287.1| threonyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|315136359|dbj|BAJ43518.1| threonyl-tRNA synthetase [Escherichia coli DH1]
 gi|315286432|gb|EFU45867.1| threonyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315290480|gb|EFU49854.1| threonyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|320181253|gb|EFW56172.1| Threonyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320194570|gb|EFW69201.1| Threonyl-tRNA synthetase [Escherichia coli WV_060327]
 gi|323937321|gb|EGB33600.1| threonyl-tRNA synthetase [Escherichia coli E1520]
 gi|323940615|gb|EGB36806.1| threonyl-tRNA synthetase [Escherichia coli E482]
 gi|323952226|gb|EGB48099.1| threonyl-tRNA synthetase [Escherichia coli H252]
 gi|323956620|gb|EGB52358.1| threonyl-tRNA synthetase [Escherichia coli H263]
 gi|323962102|gb|EGB57698.1| threonyl-tRNA synthetase [Escherichia coli H489]
 gi|323973902|gb|EGB69074.1| threonyl-tRNA synthetase [Escherichia coli TA007]
 gi|323978098|gb|EGB73184.1| threonyl-tRNA synthetase [Escherichia coli TW10509]
 gi|324011501|gb|EGB80720.1| threonyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|331039114|gb|EGI11334.1| threonine--tRNA ligase [Escherichia coli H736]
 gi|331049217|gb|EGI21289.1| threonine--tRNA ligase [Escherichia coli M718]
 gi|332758628|gb|EGJ88947.1| threonyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|333003769|gb|EGK23305.1| threonyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333004377|gb|EGK23908.1| threonyl-tRNA synthetase [Shigella flexneri K-218]
 gi|333006570|gb|EGK26070.1| threonyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333018789|gb|EGK38082.1| threonyl-tRNA synthetase [Shigella flexneri K-227]
          Length = 642

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|309788453|ref|ZP_07683057.1| threonyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308923835|gb|EFP69338.1| threonyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 622

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SDYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKELGSMDVNEVIEKLQQEIRSR 615


>gi|258625495|ref|ZP_05720387.1| threonyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258582201|gb|EEW07058.1| threonyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 642

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LIRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + +        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMEIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP ++ ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQVVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +      + +
Sbjct: 614 GKDLGKFKLDDFIKHIQAEIVSRK 637


>gi|170768863|ref|ZP_02903316.1| threonyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170122411|gb|EDS91342.1| threonyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 642

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|300716458|ref|YP_003741261.1| Threonyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299062294|emb|CAX59411.1| Threonyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 642

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLTEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPLMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRTEVNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P+    + E    A+          D      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPVKRIGTEEQWDRAEADLAAALKENDIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNERQVPVMIHRAILGSVERFIGILTEEYAGFFPTW---LAPVQVVVMNITDGQS-- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 553 -EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIAKLQDEIRSR 635


>gi|121591402|ref|ZP_01678683.1| threonyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121546739|gb|EAX56913.1| threonyl-tRNA synthetase [Vibrio cholerae 2740-80]
          Length = 642

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + D        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEVQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +     ++ +
Sbjct: 614 GKDLGKFKLDDFIAHIQAEIASRK 637


>gi|156974364|ref|YP_001445271.1| threonyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166225516|sp|A7N009|SYT_VIBHB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|156525958|gb|ABU71044.1| hypothetical protein VIBHAR_02079 [Vibrio harveyi ATCC BAA-1116]
          Length = 642

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 155/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +R +
Sbjct: 228 KALKAHLTRLEEAAKRDHRKLGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRSK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LDEYGYQEVKGPLIMDRVLWERSGHWDKYADAMFTTSSEN-REYALKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTNCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S +        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLESMEIPYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP ++ L+NI  
Sbjct: 494 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQVILMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++  +L K G     D   E+IG +     L   P  ++VG + +   ++
Sbjct: 551 KQS---DYVQEVVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I Y     S  +
Sbjct: 608 AVRTRKGKDLGKFKVDDFIAYIQDEISIRK 637


>gi|301327449|ref|ZP_07220684.1| threonyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|309793489|ref|ZP_07687916.1| threonyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|312969746|ref|ZP_07783929.1| threonyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|300845961|gb|EFK73721.1| threonyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|308123076|gb|EFO60338.1| threonyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|310338031|gb|EFQ03120.1| threonyl-tRNA synthetase [Escherichia coli 1827-70]
          Length = 622

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SDYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKDLGSMDVNEVIEKLQQEIRSR 615


>gi|292488129|ref|YP_003531006.1| threonyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292899340|ref|YP_003538709.1| threonyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291199188|emb|CBJ46302.1| threonyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291553553|emb|CBA20598.1| Threonyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|312172261|emb|CBX80518.1| Threonyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 642

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYE 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    ++T                P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDELWDRSETDLAAALKENGIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G   +    V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VGESNERQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPLQVVVMNITDGQS-- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 553 -EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + E I        + 
Sbjct: 612 RGKDLGSIDVNEAIAKLQDEIRSR 635


>gi|320173198|gb|EFW48409.1| Threonyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|320185858|gb|EFW60609.1| Threonyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332096305|gb|EGJ01306.1| threonyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 622

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKDLGSMDVNEVIEKLQQEIRSR 615


>gi|322833539|ref|YP_004213566.1| threonyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321168740|gb|ADW74439.1| threonyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 642

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 156/449 (34%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   ++  L+E   RD      +L L    + + + G+  W   G      + A +R +
Sbjct: 227 KQLNAYIQRLEEAGKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G +++Y + M   +  N +     P +      IF  
Sbjct: 285 LKSYDYQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIR 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G + I ++  + P     + E    A+          D      P E   +
Sbjct: 403 MVYDMYSTFGFEKIVVKLSTRPEKRIGTDEMWTRAEDDLAAALTENDIPFEYQPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      +SLP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           ++A++ G        V +    +G+M     ++   + G    W   +AP ++ ++NI  
Sbjct: 493 LNASYIGESNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---MAPVQVVIMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    E++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV
Sbjct: 550 SQAT---YVEELTKKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       M + EV++       + 
Sbjct: 607 AVRTRRGKDLGSMDVSEVVDKLLAEIRSR 635


>gi|121605747|ref|YP_983076.1| threonyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|166225475|sp|A1VR77|SYT_POLNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120594716|gb|ABM38155.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas
           naphthalenivorans CJ2]
          Length = 635

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 154/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E + RD      +L L    I  HS G+  W P G      V   +R+    
Sbjct: 229 QQYLTMLEEADKRDHRKLGKELDLF--HIDDHSPGLVFWHPKGWTVWQGVEQYMRKVYQN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW ++G +D Y   M        +     P +      IF+  IK
Sbjct: 287 NGYQEVKGPQLLDKTLWEKTGHWDKYRDNMFTTESEK-RDFALKPMNCPGHILIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F  T E              
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIF-CTEEQILKECVDYTTLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G K+I  +  + P     S E    A+    +   +        P E   +   
Sbjct: 405 KVYTDFGFKNIIYKVATRPEARIGSDESWDKAEHALIESLRASGCEFEISPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 465 IEYTL---------------------------KDAIGRQWQCGTI---QVDFSMPERLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG  H  V +    +G++     ++   H G    W   +AP ++S++ I     
Sbjct: 495 EYVGEDGARHRPVMLHRAIVGSLERFIGILIEEHAGALPTW---LAPEQVSVLTIT---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +    +   L   G  V  D   E+I  +     L   P  ++VG K ++   V ++
Sbjct: 549 SQAEYARGVAKTLQNQGLRVNLDLRNEKITYKIREHSLQKLPFILVVGDKEMAAGAVSVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       MSLE      +   +  
Sbjct: 609 ARGNKDLGVMSLEAFAERIASDIAQK 634


>gi|296133381|ref|YP_003640628.1| threonyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031959|gb|ADG82727.1| threonyl-tRNA synthetase [Thermincola potens JR]
          Length = 637

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 158/445 (35%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +  I +   G   + P G    + +    RE+  
Sbjct: 230 LDEYLFRLEEAKKRDHRKLGAELDLFS--IQEEGPGFPFFHPKGMIVRNELEKFWREQHE 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  LW +SG +D Y + M      +D      P +      ++++ +
Sbjct: 288 KAGYQEIRTPIILNRSLWEQSGHWDHYRENMY-FTKIDDIDFAVKPMNCPGSILVYKTRL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++ L  R E+     G+MR R F   DA+ F L P   K    K+    
Sbjct: 347 HSYRDFPIRLAELGLVHRHEMSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIIKVIDLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G K   +   + P     S E   LA     +   +K   DF I   +  F  
Sbjct: 406 DNFYKVFGFKY-HVELSTKPEKAMGSDEIWDLATNALKEALAAKGM-DFKINEGDGAFYG 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++                             R  + G I             T
Sbjct: 464 PKIDFHLMDC--------------------------LGRTWQCGTI-QLDFLMPEKFDLT 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +     G++     ++     G   +W   ++P +  ++ +      
Sbjct: 497 YVGEDGQKHRPVMIHRVVFGSIERFIGILIEHFAGALPVW---LSPVQAKIMTVTDRS-- 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   EK+   L + G  V  D   E+IG +   A +   P  ++VG K + +  V ++ 
Sbjct: 552 -KQYAEKVADWLKEKGVRVEVDARNEKIGYKIREAQVEKVPYMLVVGDKEMENGTVAVRK 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G +  ++ ++ +   +      
Sbjct: 611 RGEGDKGAVNADDFVALITKEIKEK 635


>gi|152996610|ref|YP_001341445.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083612|sp|A6VYI1|SYT_MARMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150837534|gb|ABR71510.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 645

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 157/444 (35%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      KL L    + + + G+  W P G +    V   +R++Q    
Sbjct: 232 YLTRIEEAEKRDHRKLGKKLDLF--HVQEEAPGMVFWHPKGWRLYQAVEQYMRQKQLDNN 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +  Y + M      N +     P +      ++   +KSY
Sbjct: 290 YQEVKTPQIVDRVLWEKSGHWGKYHENMFTTHSEN-RDYAVKPMNCPCHIQVYNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LPF   +     R+E      G+MR R F+  D + F +T    +   ++       +
Sbjct: 349 RDLPFRMAEFGSCHRNEPSGALHGIMRVRNFVQDDGHIF-VTEGQIQQEVSEFIDLLHEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     S E    A+   ++   S       +P E   +   I 
Sbjct: 408 YADFGFDNIVYRLSTRPEQRVGSDEVWDKAEKALSEALDSAGLDWEELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      +S+P  + A +
Sbjct: 468 FSL---------------------------KDAIGRVWQCGTI---QVDFSMPTRLGAQY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     V +    +G++     ++    +G   +W   +AP ++ ++NI       
Sbjct: 498 VSEDGSRQTPVMLHRAIVGSLERFIGILIEDTEGAFPVW---LAPEQVVIMNIT---DRQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C  +  RL+  G     D   E+IG +     L   P  ++VG K V   +V ++ R
Sbjct: 552 ADYCSVLEKRLNSNGFRAKLDLRNEKIGFKIREHTLQRVPYMIVVGDKEVEQEQVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS+ +         +  
Sbjct: 612 TGEDLGVMSISDFEGLLQQEIARR 635


>gi|313668802|ref|YP_004049086.1| threonyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313006264|emb|CBN87726.1| putative threonyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 637

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 165/445 (37%), Gaps = 46/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  ++E   RD      +L L    +   + G+  W P G      V   +R+E N 
Sbjct: 229 KAYIRRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQAVEQHMRKELNA 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +     W +SG +++Y   M  +     +     P +      IF + ++
Sbjct: 287 AGYKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T +             +
Sbjct: 346 SYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLV 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RI+ + G   + ++    P     S E    A+ G  +   +       +P E   +   
Sbjct: 405 RIYKQFGFHDVSVKLSLRPEKRAGSDEVWDKAEQGLREALTACGVEWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G        + LP  ++A
Sbjct: 465 IEY---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +
Sbjct: 495 EYVTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C ++ ARL   G  V  D   E+IG +        FP Q++VG K   ++KV ++
Sbjct: 549 NQADYCREVAARLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R       + L++ I       ++
Sbjct: 609 -RKAEDLGSLDLDDFIAQLQQEIAD 632


>gi|269963856|ref|ZP_06178168.1| threonyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269831343|gb|EEZ85490.1| threonyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 655

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 155/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IR +
Sbjct: 241 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIRSK 298

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 299 LDEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 357

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 358 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTNCIK 416

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S +        E   +
Sbjct: 417 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLESMEIPYEIQEGEGAFY 476

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 477 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFNLPGR 506

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  L+NI  
Sbjct: 507 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAILMNITD 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +++  +L K G     D   E+IG +     L   P  ++VG + +   ++
Sbjct: 564 KQS---EYVQEVVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEI 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I Y     S+ +
Sbjct: 621 AVRTRKGKDLGKFKVDDFIAYIQDEISSRK 650


>gi|300904575|ref|ZP_07122412.1| threonyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300403488|gb|EFJ87026.1| threonyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|315257476|gb|EFU37444.1| threonyl-tRNA synthetase [Escherichia coli MS 85-1]
          Length = 622

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SDYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKDLGSMDVNEVIEKLQQEIRSR 615


>gi|300924761|ref|ZP_07140703.1| threonyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300419049|gb|EFK02360.1| threonyl-tRNA synthetase [Escherichia coli MS 182-1]
          Length = 642

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SDYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVQSGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|300818358|ref|ZP_07098568.1| threonyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300821407|ref|ZP_07101554.1| threonyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300525910|gb|EFK46979.1| threonyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300528998|gb|EFK50060.1| threonyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|323158484|gb|EFZ44500.1| threonyl-tRNA synthetase [Escherichia coli E128010]
 gi|323175213|gb|EFZ60827.1| threonyl-tRNA synthetase [Escherichia coli LT-68]
 gi|323180497|gb|EFZ66042.1| threonyl-tRNA synthetase [Escherichia coli 1180]
 gi|323186265|gb|EFZ71617.1| threonyl-tRNA synthetase [Escherichia coli 1357]
          Length = 622

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKDLGSMDVNEVIEKLQQEIRSR 615


>gi|109898814|ref|YP_662069.1| threonyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|109701095|gb|ABG41015.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Pseudoalteromonas atlantica T6c]
          Length = 638

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 164/452 (36%), Gaps = 49/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   + H    + G+  W   G      +   +R
Sbjct: 227 KQLKAYLNRLEE----AEKRDHRKIGKALDLFHWQEEAPGMVFWHNDGWSIYTELEKFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +       E+  P +    LW +SG +D Y + M        +     P +      IF
Sbjct: 283 SKLREYEYDEVKAPLMMDRSLWEKSGHWDKYAENMFTTTSEK-REYAVKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +         
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTDDQILAEVGGC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             S   I+   G ++I ++  + P     S E    A+    +   SK      +P E  
Sbjct: 401 IDSVYEIYKIFGFENISVKLSTRPEKRVGSDEVWDKAEKELAEALTSKGIDFQYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      +S+P
Sbjct: 461 FYGPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSMP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + +T+   DG+    V +    +G++     ++   + G   +W   +AP +  ++NI
Sbjct: 491 GRLGSTYVAEDGERKVPVMIHRAILGSLERFIGILIEEYSGFFPLW---LAPTQAVVMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +     +  +K+  +L ++G     D   E+IG +     L   P  ++VG K +   
Sbjct: 548 TDNQS---EYAQKVVKKLKEIGIRAKSDLRNEKIGFKIREHTLRRVPYLLVVGDKEIEAG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ ++ R       MS++  I  A  +  + +
Sbjct: 605 EIAVRSRKGDDLGKMSVDAFIELACEQIKSKQ 636


>gi|74152256|dbj|BAE32409.1| unnamed protein product [Mus musculus]
          Length = 511

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 148/455 (32%), Positives = 227/455 (49%), Gaps = 44/455 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 78  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 137

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 138 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 197

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S  K SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 198 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 257

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 258 TYGLVCDAYCRLFDRLGLRWMKARADVGSIGGTMSHEFQLPVDIGEDRL----------- 306

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          +V       A T  +   +      +      +GIEVGH FY GT
Sbjct: 307 ---------------VVCPSCHFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLGT 351

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 352 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 411

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    +    +  EK+Y  + +       +V  DD     IG++   A+ LG+P  +I
Sbjct: 412 PPKKGSKETAATEIVEKLYDDVMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVII 471

Query: 406 VGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYAS 439
            G + + D    E+  + TG    ++ E V+   +
Sbjct: 472 AGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 506


>gi|260597637|ref|YP_003210208.1| threonyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260216814|emb|CBA30296.1| Threonyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 642

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQVRDEVNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E    A+          +      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGTDEMWDRAEADLAVALEENNIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPARLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|254785570|ref|YP_003072999.1| threonyl-tRNA synthetase [Teredinibacter turnerae T7901]
 gi|259516754|sp|C5BSQ1|SYT_TERTT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237684404|gb|ACR11668.1| threonine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 637

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 158/446 (35%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      K  L    + + + G+  W P G      +   +R+ Q  
Sbjct: 229 KAYLHRLEEAEKRDHRKLGKKFDLF--HLQEEAPGMVFWHPKGWSVYTAIEQYMRKVQRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D +   M  +   + +     P +      +F   +K
Sbjct: 287 NGYKEIKTPQVVDRSLWERSGHWDKFRDGMFTVESES-RDYAVKPMNCPCHIQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +     R+E      G+MR R F   D + F    +  +   +       
Sbjct: 346 SYRDLPLRFAEFGSCHRNEASGTLQGIMRVRAFTQDDGHIFCA-EDAIQSEVSIFTDLLY 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G + + +R  + P     S E    ++        +K      +P E   +   
Sbjct: 405 EVYRDFGFEDVIIRLSTRPEQRVGSEEVWDKSEKALADALNAKGLAFEYLPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G I      +S+P  + A
Sbjct: 465 IEFSL---------------------------KDCIGRVWQCGTI---QVDFSMPARLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F   DG     V +    +G+      ++  +++G     P  +AP ++ ++NI  +  
Sbjct: 495 QFVAEDGSRQVPVMLHRAILGSFERFIGILIENYEGAF---PPWLAPEQVVVMNITDN-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK+   L   G  V  D   E+IG +     +   P  ++VG + + ++ V ++
Sbjct: 550 -QAEYAEKVRNSLQNEGFRVVSDLRNEKIGFKIREHTIQKVPYLLVVGDQEMENNSVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R        S+++     +   +  
Sbjct: 609 TREGKDLGTYSVDDFATLLADSVAKR 634


>gi|225025724|ref|ZP_03714916.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
 gi|224941505|gb|EEG22714.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
          Length = 635

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 39/439 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E +  G
Sbjct: 233 YITRIEEAEKRDHRRLGKQLDLF--HLQDEAPGMVFWHPRGWTLWQTIEQHMRRELDAAG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M   +    +     P +      IF   ++SY
Sbjct: 291 YREVKTPQILDKTFWEKSGHWANYKDNMFTTSSEK-RDYAVKPMNCPGHVQIFNHGLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             ++I
Sbjct: 350 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIAEETRAFNQLVMKI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G + + ++    P     + E    A+ G      +       +P E   +   + 
Sbjct: 409 YKQFGFEHVSIKLSLRPEQRAGTDETWDKAEQGLRDALTACGVQWEELPGEGAFYGPKVE 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     ++       G +Y          
Sbjct: 469 Y--------------------HIKDALGRSWQCGTIQLDFVLPERLGAEY-------VTE 501

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +G+   V +    +G++     ++   H G   +W   +AP ++ ++NI    +   D 
Sbjct: 502 DNGRARPVMLHRAILGSLERFIGILIEEHAGSFPLW---LAPVQMVVMNIT---EKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C ++  +L   G     D   E+IG +      + +P QV+VG K + + +V ++ R   
Sbjct: 556 CLEVVNKLKAAGLRAEADLRNEKIGYKIRDNSQMRYPYQVVVGDKEMENGQVAVR-RKGE 614

Query: 425 IREDMSLEEVINYASHRFS 443
               M +EE I       +
Sbjct: 615 DLGSMQIEEFIARLQQELA 633


>gi|295096109|emb|CBK85199.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 622

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVREEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                   E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEADLAVALEENGIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPQRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G++     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 ADYVKELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 592 RGKDLGSLDVSEVIEKLQQEIRSR 615


>gi|296102767|ref|YP_003612913.1| threonyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057226|gb|ADF61964.1| threonyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 642

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                   E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEADLAVALEENGIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPQRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G++     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 ADYVKELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 612 RGKDLGSLDVSEVIEKLQQEIRSR 635


>gi|15601053|ref|NP_232683.1| threonyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153817556|ref|ZP_01970223.1| threonyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|227811910|ref|YP_002811920.1| threonyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229506559|ref|ZP_04396068.1| threonyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510645|ref|ZP_04400125.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229517224|ref|ZP_04406669.1| threonyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229606038|ref|YP_002876742.1| threonyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254850514|ref|ZP_05239864.1| threonyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255745914|ref|ZP_05419861.1| threonyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262163529|ref|ZP_06031275.1| threonyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|298500133|ref|ZP_07009939.1| threonyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|22654144|sp|Q9KMN7|SYT_VIBCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783545|sp|C3LUV8|SYT_VIBCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9657684|gb|AAF96196.1| threonyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126511981|gb|EAZ74575.1| threonyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|227011052|gb|ACP07263.1| threonyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229345260|gb|EEO10233.1| threonyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229353090|gb|EEO18030.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229356910|gb|EEO21828.1| threonyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229372524|gb|ACQ62946.1| threonyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254846219|gb|EET24633.1| threonyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255735668|gb|EET91066.1| threonyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262028096|gb|EEY46755.1| threonyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|297542114|gb|EFH78165.1| threonyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 642

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + D        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +     ++ +
Sbjct: 614 GKDLGKFKLDDFIAHIQAEIASRK 637


>gi|227885859|ref|ZP_04003664.1| threonine--tRNA ligase [Escherichia coli 83972]
 gi|300898493|ref|ZP_07116830.1| threonyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300917719|ref|ZP_07134368.1| threonyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300930805|ref|ZP_07146177.1| threonyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300951319|ref|ZP_07165163.1| threonyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300958608|ref|ZP_07170733.1| threonyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301050944|ref|ZP_07197793.1| threonyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|301647910|ref|ZP_07247687.1| threonyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|227837432|gb|EEJ47898.1| threonine--tRNA ligase [Escherichia coli 83972]
 gi|300297398|gb|EFJ53783.1| threonyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300314733|gb|EFJ64517.1| threonyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300357845|gb|EFJ73715.1| threonyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300415120|gb|EFJ98430.1| threonyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300449416|gb|EFK13036.1| threonyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300461363|gb|EFK24856.1| threonyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|301073967|gb|EFK88773.1| threonyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|312946320|gb|ADR27147.1| threonyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313649261|gb|EFS13695.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|315618916|gb|EFU99499.1| threonyl-tRNA synthetase [Escherichia coli 3431]
 gi|323169354|gb|EFZ55030.1| threonyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323186901|gb|EFZ72219.1| threonyl-tRNA synthetase [Escherichia coli RN587/1]
 gi|324007092|gb|EGB76311.1| threonyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|332090644|gb|EGI95739.1| threonyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332093917|gb|EGI98970.1| threonyl-tRNA synthetase [Shigella dysenteriae 155-74]
 gi|332759227|gb|EGJ89536.1| threonyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332762542|gb|EGJ92807.1| threonyl-tRNA synthetase [Shigella flexneri 4343-70]
 gi|332767218|gb|EGJ97413.1| threonyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333018198|gb|EGK37500.1| threonyl-tRNA synthetase [Shigella flexneri K-304]
          Length = 622

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKDLGSMDVNEVIEKLQQEIRSR 615


>gi|157145991|ref|YP_001453310.1| threonyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|157083196|gb|ABV12874.1| hypothetical protein CKO_01745 [Citrobacter koseri ATCC BAA-895]
          Length = 622

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  ++A++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLNASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DTQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 592 RGKDLGSLDVNEVIEKLQQEIRSR 615


>gi|301303993|ref|ZP_07210111.1| threonyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300840790|gb|EFK68550.1| threonyl-tRNA synthetase [Escherichia coli MS 124-1]
          Length = 429

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 19  YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 76

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 77  YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 135

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 136 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 195 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 254

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 255 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 284

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 285 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 338

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 339 SDYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 398

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 399 RGKDLGSMDVNEVIEKLQQEIRSR 422


>gi|238895235|ref|YP_002919970.1| threonyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238547552|dbj|BAH63903.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 642

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPQRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGENNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTW---IAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|153827549|ref|ZP_01980216.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|153829051|ref|ZP_01981718.1| threonyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|229514759|ref|ZP_04404220.1| threonyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229522960|ref|ZP_04412374.1| threonyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229526102|ref|ZP_04415506.1| threonyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229527753|ref|ZP_04417144.1| threonyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|254284959|ref|ZP_04959925.1| threonyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|148875480|gb|EDL73615.1| threonyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|149738482|gb|EDM52878.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|150424962|gb|EDN16739.1| threonyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|229334115|gb|EEN99600.1| threonyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229336260|gb|EEO01278.1| threonyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229340177|gb|EEO05185.1| threonyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229348739|gb|EEO13697.1| threonyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|327485485|gb|AEA79891.1| Threonyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
 gi|327485490|gb|AEA79896.1| Threonyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
          Length = 642

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + D        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +     ++ +
Sbjct: 614 GKDLGKFKLDDFIAHIQAEIASRK 637


>gi|206580341|ref|YP_002237974.1| threonyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288934884|ref|YP_003438943.1| threonyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|290509026|ref|ZP_06548397.1| threonyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|238065116|sp|B5XQC6|SYT_KLEP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|206569399|gb|ACI11175.1| threonyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288889593|gb|ADC57911.1| threonyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|289778420|gb|EFD86417.1| threonyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 642

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPQRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGENNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTW---IAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVSEVIEKLQQEIRSR 635


>gi|261250893|ref|ZP_05943467.1| threonyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937766|gb|EEX93754.1| threonyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 642

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +RE+
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW  SG +D Y + M   +  N +     P +      IF  
Sbjct: 286 LTEYGYQEVKGPLIMDRVLWERSGHWDKYAEAMFTTSSEN-REYALKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   + D        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLEAMDIAYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   + +    V +    +G++     ++   + G    W   ++P +  ++NI  
Sbjct: 494 LGATYVDENNERQTPVMIHRAILGSLERFIGILIEEYYGFFPTW---LSPEQAVIMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 551 KQS---DYVQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I+Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKVDDFISYIQDEISSRK 637


>gi|331663198|ref|ZP_08364108.1| threonine--tRNA ligase [Escherichia coli TA143]
 gi|331683225|ref|ZP_08383826.1| threonine--tRNA ligase [Escherichia coli H299]
 gi|331058997|gb|EGI30974.1| threonine--tRNA ligase [Escherichia coli TA143]
 gi|331079440|gb|EGI50637.1| threonine--tRNA ligase [Escherichia coli H299]
          Length = 642

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|262394487|ref|YP_003286341.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338081|gb|ACY51876.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 642

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IR +
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LDEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTNCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S D        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLESMDIPYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  L+NI  
Sbjct: 494 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVLMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    ++I  +L K G     D   E+IG +     L   P  ++VG + +   ++
Sbjct: 551 KQSG---YVQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKVDDFIAYIQDEISSRK 637


>gi|330445795|ref|ZP_08309447.1| threonyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489986|dbj|GAA03944.1| threonyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 643

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G      +   +RE+
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFVREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LNEYDYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEAQVQQEVTSCIE 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S      A++       S +        E   +
Sbjct: 404 MVYDTYKTFGFDNIVVKLSTRPEKRVGSDAMWDKAESDLVTALESMNIPFEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFALPER 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G D + H  V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 494 LGATYVGEDNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTW---LAPQQAVVMNIT- 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++I  +L K G  V  D   E+IG +     L   P  ++ G K V    V
Sbjct: 550 --DAQSEYVQEIVEKLKKCGIRVNADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGVV 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         ++E++ +     S+ +
Sbjct: 608 AVRTRKGKDLGKFKIDELVAFMQEEISSRK 637


>gi|319637847|ref|ZP_07992613.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317401002|gb|EFV81657.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 637

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 162/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVDEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 407 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  ++A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  +++++ I       ++
Sbjct: 610 KAEDLGSLNVDDFIAQLQQEITD 632


>gi|291398822|ref|XP_002716008.1| PREDICTED: prolyl-tRNA synthetase (mitochondrial)(putative)
           [Oryctolagus cuniculus]
          Length = 478

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 157/455 (34%), Positives = 233/455 (51%), Gaps = 44/455 (9%)

Query: 3   RSKYFLPI-LQENPR--------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          +    S +LML+ G+I   S G Y  LP   +AL+ +
Sbjct: 45  LSRIFQPQNLREDQALSLESRSGELTCKSQRLMLQVGLILPASPGCYHLLPYTVRALEKL 104

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++S+P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEEV
Sbjct: 105 VRLIDQEMQAVGGQKVSLPSLSPAELWRATQRWDLMGKELLRLQDRHGKEYCLGPTHEEV 164

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S    SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 165 VTALVASQKNLSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARQ 224

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F RLGL+ I  +A+ G IGG +SHEF +  + GE Q+           
Sbjct: 225 TYGLVCDAYCSLFSRLGLQVIKAQADVGSIGGTMSHEFQLPVEVGEDQLAVCPSCGF--- 281

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            S N +  D    N  V Q                            RGIEVGH FY GT
Sbjct: 282 -SANVETLDSSQTNCPVCQGPLTET----------------------RGIEVGHTFYLGT 318

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS    A F  A+GK    +MG YG+G  R++AA IE       + WP  +AP+++ LI
Sbjct: 319 KYSSIFRAQFTNAEGKPCLAEMGCYGLGVSRILAAAIEVLATEDSVRWPGLLAPYQVCLI 378

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    +    +  E++Y  +++       ++  DD     IGS+   AD LG+P  V+
Sbjct: 379 PPKKGSKEAAATELTERLYDHIAEAVPQLHGELVLDDRTHLTIGSRLKDADKLGYPFVVV 438

Query: 406 VGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYAS 439
            G + + +    E+  + TG +  ++ E V++  +
Sbjct: 439 AGKRALEEPACFEVWCQNTGEQLFLTREGVLDLLT 473


>gi|147671507|ref|YP_001215778.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|262168212|ref|ZP_06035910.1| threonyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|172047342|sp|A5EZ18|SYT_VIBC3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146313890|gb|ABQ18430.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227014955|gb|ACP11164.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|262023455|gb|EEY42158.1| threonyl-tRNA synthetase [Vibrio cholerae RC27]
          Length = 642

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G      +   IR + N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRELEIFIRHKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + D        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +     ++ +
Sbjct: 614 GKDLGKFKLDDFIAHIQAEIASRK 637


>gi|16764684|ref|NP_460299.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991842|ref|ZP_02572941.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168244449|ref|ZP_02669381.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448321|ref|YP_002045340.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197262906|ref|ZP_03162980.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|22654123|sp|Q8ZPS9|SYT_SALTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690646|sp|B4TGH1|SYT_SALHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16419852|gb|AAL20258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194406625|gb|ACF66844.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197241161|gb|EDY23781.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329759|gb|EDZ16523.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336802|gb|EDZ23566.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261246542|emb|CBG24352.1| ThrRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993213|gb|ACY88098.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157870|emb|CBW17364.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912318|dbj|BAJ36292.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223961|gb|EFX49024.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129604|gb|ADX17034.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988221|gb|AEF07204.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 642

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|269214426|ref|ZP_05986526.2| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209844|gb|EEZ76299.1| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 643

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 165/445 (37%), Gaps = 46/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  ++E   RD      +L L    +   + G+  W P G      V   +R+E N 
Sbjct: 235 KAYIRRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQAVEQHMRKELNA 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +     W +SG +++Y   M  +     +     P +      IF + ++
Sbjct: 293 AGYKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLR 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T +             +
Sbjct: 352 SYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLV 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RI+ + G   + ++    P     S E    A+ G  +   +       +P E   +   
Sbjct: 411 RIYKQFGFHDVSVKLSLRPGKRAGSDEVWDKAEQGLREALTACGVEWEELPGEGAFYGPK 470

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G        + LP  ++A
Sbjct: 471 IEY---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNA 500

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +
Sbjct: 501 EYVTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---E 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C ++ ARL   G  V  D   E+IG +        FP Q++VG K   ++KV ++
Sbjct: 555 NQADYCREVAARLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R       + L++ I       ++
Sbjct: 615 -RKAEDLGSLDLDDFIAQLQQEIAD 638


>gi|187929057|ref|YP_001899544.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|238691850|sp|B2UGJ8|SYT_RALPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187725947|gb|ACD27112.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 635

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 155/444 (34%), Gaps = 45/444 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R      I ++S G   W P G      +   +R     
Sbjct: 231 YLHMLEE----AEKRDHRKLGRELDLFHIDEYSPGTVFWHPKGWTLWQEIEQYMRRVYRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y + M  + +   +     P +      I++  IK
Sbjct: 287 NGYQEVKGPQILDKTLWEKTGHWDKYRENMF-ITESEKREYALKPMNCPGHILIYKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +     R+E      G+MR R F   D + F  T +  +           
Sbjct: 346 SYRDLPLRFGEFGACHRNEPSGGLHGIMRVRGFTQDDGHIF-CTEDMIQAEVTAFTTLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P     + E    A+    +   +       +P E   +   
Sbjct: 405 KVYKDFGFTEILYKLSTRPDKRIGTEESWDRAEAALAEGLRASGCEFEYLPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               K    R  + G I          + A F
Sbjct: 465 IEY---------------------------VLKDALGRQWQCGTI-QVDPNLPERLDAEF 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H  + +    +G++     ++   + G    W   ++P ++ +++I       
Sbjct: 497 VGEDGARHRPIMLHRAIVGSLERFIGILIEQYAGALPTW---LSPVQVVVLSIT---DSH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G     D   E+IG +     +   P QV+VG K   +++V ++ R
Sbjct: 551 AEYAQSVAQSLQKQGFRAVVDLRNEKIGYKIREHSVQKVPYQVVVGDKERDENQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M L   +    +  +N 
Sbjct: 611 GNVDLGSMPLSAFVERLKNDLANK 634


>gi|16760562|ref|NP_456179.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141677|ref|NP_805019.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|167552305|ref|ZP_02346058.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168239001|ref|ZP_02664059.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168821978|ref|ZP_02833978.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194736705|ref|YP_002114350.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251550|ref|YP_002146704.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|200390235|ref|ZP_03216846.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204927743|ref|ZP_03218944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213423451|ref|ZP_03356434.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426331|ref|ZP_03359081.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852224|ref|ZP_03381756.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238910851|ref|ZP_04654688.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|22654121|sp|Q8Z6I2|SYT_SALTI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690055|sp|B5F7G2|SYT_SALA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693694|sp|B4TUF0|SYT_SALSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25292951|pir||AC0706 threonine-tRNA ligase (EC 6.1.1.3) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502858|emb|CAD02020.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137305|gb|AAO68868.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194712207|gb|ACF91428.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197215253|gb|ACH52650.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197288252|gb|EDY27637.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199602680|gb|EDZ01226.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323085|gb|EDZ08281.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323017|gb|EDZ10856.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205341550|gb|EDZ28314.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086187|emb|CBY95961.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322620023|gb|EFY16896.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622333|gb|EFY19178.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627857|gb|EFY24647.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633045|gb|EFY29788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636709|gb|EFY33412.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641265|gb|EFY37906.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645254|gb|EFY41783.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650195|gb|EFY46609.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655769|gb|EFY52071.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660095|gb|EFY56334.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665338|gb|EFY61526.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669596|gb|EFY65744.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673522|gb|EFY69624.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677448|gb|EFY73512.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679887|gb|EFY75926.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687359|gb|EFY83331.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192477|gb|EFZ77707.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198668|gb|EFZ83769.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204096|gb|EFZ89110.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208715|gb|EFZ93653.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210228|gb|EFZ95127.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217691|gb|EGA02406.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220245|gb|EGA04700.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223489|gb|EGA07815.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229493|gb|EGA13616.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232716|gb|EGA16812.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240245|gb|EGA24289.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242767|gb|EGA26788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249083|gb|EGA33002.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254416|gb|EGA38233.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255600|gb|EGA39356.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260123|gb|EGA43748.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267113|gb|EGA50598.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271563|gb|EGA54984.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 642

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|161524952|ref|YP_001579964.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350300|ref|YP_001945928.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|238687005|sp|A9ABF9|SYT_BURM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160342381|gb|ABX15467.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334322|dbj|BAG43392.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
          Length = 635

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 154/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQIIAESIAFNKLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G  +   +       +P E   +   I 
Sbjct: 407 YRDFGFDHIDIKLSLRPEQRMGSDETWDRAEQGLREALTACGLQWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMMLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G+M     ++   H G   +W   +AP +  ++NI    +   + 
Sbjct: 500 DNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPVQAVVLNIA---ESQVEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AQSLAQTLQKQGLRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +        + +
Sbjct: 614 DLGVMPVEAFVERLQEDLRSFK 635


>gi|161614260|ref|YP_001588225.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|194446059|ref|YP_002040590.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198243456|ref|YP_002215793.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857160|ref|YP_002243811.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|189083620|sp|A9N243|SYT_SALPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690315|sp|B5FJA8|SYT_SALDC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690400|sp|B5QVW8|SYT_SALEP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693615|sp|B4T4M8|SYT_SALNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161363624|gb|ABX67392.1| hypothetical protein SPAB_02005 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404722|gb|ACF64944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197937972|gb|ACH75305.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206708963|emb|CAR33293.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 642

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|62179922|ref|YP_216339.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168263848|ref|ZP_02685821.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463268|ref|ZP_02697199.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|73919823|sp|Q57PV3|SYT_SALCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62127555|gb|AAX65258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|195634423|gb|EDX52775.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205347615|gb|EDZ34246.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|322714388|gb|EFZ05959.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 642

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|218548710|ref|YP_002382501.1| threonyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226701412|sp|B7LQ71|SYT_ESCF3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218356251|emb|CAQ88868.1| threonyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|324113470|gb|EGC07445.1| threonyl-tRNA synthetase [Escherichia fergusonii B253]
          Length = 642

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|323499329|ref|ZP_08104306.1| threonyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323315717|gb|EGA68751.1| threonyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 642

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IR +
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LDEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   + +        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLEAMNIEYELQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A++   + +    V +    +G++     ++   + G    W   ++P +  ++NI  
Sbjct: 494 LGASYVDENNERQVPVMIHRAILGSLERFIGILIEEYFGFFPTW---LSPEQAVIMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++  +L KVG     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 551 KQS---DYAQEVAQKLQKVGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I+Y     S  +
Sbjct: 608 AVRTRKGKDLGKFKVDDFISYIQDEISTRK 637


>gi|168233251|ref|ZP_02658309.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472380|ref|ZP_03078364.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458744|gb|EDX47583.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205332671|gb|EDZ19435.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 642

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|15802131|ref|NP_288153.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15831680|ref|NP_310453.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168762217|ref|ZP_02787224.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168788115|ref|ZP_02813122.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168800100|ref|ZP_02825107.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|187776029|ref|ZP_02799987.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188024843|ref|ZP_02774486.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189010441|ref|ZP_02807141.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189402338|ref|ZP_02781727.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189403439|ref|ZP_02795487.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|208810744|ref|ZP_03252620.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208816647|ref|ZP_03257767.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|209400429|ref|YP_002270789.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217328990|ref|ZP_03445071.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254793336|ref|YP_003078173.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|291282899|ref|YP_003499717.1| Threonyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|22654116|sp|Q8XE27|SYT_ECO57 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238065112|sp|B5YQ07|SYT_ECO5E RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12515733|gb|AAG56706.1|AE005395_2 threonine tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13361893|dbj|BAB35849.1| threonine tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187769425|gb|EDU33269.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188016225|gb|EDU54347.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189000290|gb|EDU69276.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189356196|gb|EDU74615.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189360618|gb|EDU79037.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189367509|gb|EDU85925.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189372060|gb|EDU90476.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189377572|gb|EDU95988.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|208725260|gb|EDZ74967.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208730990|gb|EDZ79679.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|209161829|gb|ACI39262.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209768828|gb|ACI82726.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768830|gb|ACI82727.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768832|gb|ACI82728.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768834|gb|ACI82729.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768836|gb|ACI82730.1| threonine tRNA synthetase [Escherichia coli]
 gi|217318337|gb|EEC26764.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254592736|gb|ACT72097.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290762772|gb|ADD56733.1| Threonyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320188406|gb|EFW63068.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320652208|gb|EFX20506.1| threonyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320657809|gb|EFX25571.1| threonyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658384|gb|EFX26078.1| threonyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|326342086|gb|EGD65867.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|326343638|gb|EGD67400.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 642

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRSR 635


>gi|302878338|ref|YP_003846902.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302581127|gb|ADL55138.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 637

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 152/446 (34%), Gaps = 44/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   RD      +L L    + +   G+  W P G      +   +R +  
Sbjct: 228 LESYLHRLEEAEKRDHRKLGRQLDLF--HMQETMPGMVFWHPKGWTLWQEIEQYMRAKFR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW +SG +++Y   M   A  N +     P +      I+   +
Sbjct: 286 EHDYQEVRTPAIMDKTLWEKSGHWENYRDNMFTTASEN-RDYAVKPMNCPGHVQIYNHGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R+E      G+MR R F   DA+ F  T    +   +   V  
Sbjct: 345 HSYRDLPLRLAEFGSCHRNESSGSLHGLMRVRGFTQDDAHIF-CTEAQVESEVSNFIVML 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G  ++ ++  + P     S E    A+ G               P E   +  
Sbjct: 404 NEVYRDFGFDNVIVKLSTRPEKRVGSDETWDKAEAGLAAALKQNRLDYEVQPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            +                               K    R  + G I      ++LP  +S
Sbjct: 464 KVEFTL---------------------------KDSLDRMWQCGTI---QLDFNLPVRLS 493

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F   D       M     +G+M     ++   H G   +W   ++P +  L+NI    
Sbjct: 494 AEFVDEDNTRKPPVMLHRAILGSMERFIGILIEHHAGAFPMW---LSPVQTVLMNI---S 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q   +  ++I   L++ G  V  D   E+I  +     L   P Q+IVG K VS   + +
Sbjct: 548 QAQEEYAKEIGQILARAGIRVQLDLRNEKITYKIREHSLQKLPYQLIVGDKEVSGRLIAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + R       M+++ +I        +
Sbjct: 608 RTRSGEDLGQMTIDALIERFKAEIKS 633


>gi|309378779|emb|CBX22605.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 637

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 165/445 (37%), Gaps = 46/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  ++E   RD      +L L    +   + G+  W P G      V   +R+E N 
Sbjct: 229 KAYIRRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQAVEQHMRKELNA 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +     W +SG +++Y   M  +     +     P +      IF + ++
Sbjct: 287 AGYKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T +             +
Sbjct: 346 SYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARVFNELLV 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RI+ + G   + ++    P     S E    A+ G  +   +       +P E   +   
Sbjct: 405 RIYKQFGFHDVSVKLSLRPGKRAGSDEVWDKAEQGLREALTACGVEWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G        + LP  ++A
Sbjct: 465 IEY---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +
Sbjct: 495 EYVTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C ++ ARL   G  V  D   E+IG +        FP Q++VG K   ++KV ++
Sbjct: 549 NQADYCREVAARLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R       + L++ I       ++
Sbjct: 609 -RKAEDLGSLDLDDFIAQLQQEIAD 632


>gi|308186646|ref|YP_003930777.1| Threonyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308057156|gb|ADO09328.1| Threonyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 642

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQVRDEVNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E    A+          +      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGTDEMWDRAEEDLAAALNENNIEFEFQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  + AT+
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPKRLEATY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPLQVVVMNITDG---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVESLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M ++  +        + 
Sbjct: 612 RGKDLGSMDVDLFVEKLQQEIRSR 635


>gi|294670480|ref|ZP_06735360.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307759|gb|EFE49002.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 637

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 162/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S++    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSNDVWDKAEQGLREALTACGVEWDELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPAQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEIAD 632


>gi|139948347|ref|NP_758476.2| probable prolyl-tRNA synthetase, mitochondrial isoform 1 [Mus
           musculus]
 gi|123239922|emb|CAM27480.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 475

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 147/455 (32%), Positives = 226/455 (49%), Gaps = 44/455 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 42  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S  K SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 162 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHEFQLPVDIGEDRL----------- 270

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          +V       A T  +   +      +      +GIEVGH FY  T
Sbjct: 271 ---------------VVCPSCHFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLST 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 316 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    +    +  EK+Y  + +       +V  DD     IG++   A+ LG+P  +I
Sbjct: 376 PPKKGSKETAATEIVEKLYDDIMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVII 435

Query: 406 VGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYAS 439
            G + + D    E+  + TG    ++ E V+   +
Sbjct: 436 AGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 470


>gi|325497120|gb|EGC94979.1| threonyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 652

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 242 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 300 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 359 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 418 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 478 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 507

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 508 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 562 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 621

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 622 RGKDLGSMDVNEVIEKLQQEIRSR 645


>gi|53805116|ref|YP_113204.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|73919805|sp|Q60AZ3|SYT_METCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53758877|gb|AAU93168.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 638

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 157/442 (35%), Gaps = 49/442 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R     
Sbjct: 231 YLQRLEE----AERRDHRKLGKALDLFHMQEEAPGMVFWHPKGWILWQEIEQYMRRVFRD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +  LW  SG ++ +  EM   A   ++     P +      ++   +K
Sbjct: 287 NGYQEIRTPLVVARTLWERSGHWEKFSDEMFTTASE-ERDYAIKPMNCPCHVQVYNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+EL     G+MR R F   DA+ F  T E  +   ++      
Sbjct: 346 SYRDLPLRLAEFGSCHRNELSGALHGLMRVRGFTQDDAHIF-CTEEQIQDEVSRFIDLLF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   + ++  + P     S E    A+        +K       P E   +   
Sbjct: 405 KVYADFGFSEVQIKLSTRPEKRVGSDEVWDKAEHALETALNAKGLAWDLQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G I      +S+P  + A
Sbjct: 465 IEFSL---------------------------KDCLDRVWQCGTI---QVDFSMPDRLGA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   DG  H  V +    +G++     ++   + G+  +W   +AP +  ++NI     
Sbjct: 495 TYVAEDGARHVPVMLHRAILGSLERFVGILTEHYAGQYPLW---LAPVQAVVLNIT---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++       G  V  D   E++G +     +   P  +IVG K V    V ++
Sbjct: 549 RQADYAREVAQEFVSKGFRVIADLRNEKVGFKIREHSMQRVPYLLIVGDKEVEAGSVSLR 608

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R         + +++   +  
Sbjct: 609 TRDGKDHGSFGIGDLVAKFTEE 630


>gi|168179213|ref|ZP_02613877.1| threonyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182670074|gb|EDT82050.1| threonyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 635

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 162/445 (36%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L +  IH+   G   + P G    + + +  REE  
Sbjct: 228 LDEYLNMIEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHT 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ +
Sbjct: 286 KAGYQEIRTPLILNEALWHQSGHWDHYKENMY-FTNIDDDDYAIKPMNCPGGILVYKNSM 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +    
Sbjct: 345 HSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEVVGIIKLI 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +   G +   +   + P     S E   +A  G  +   S          +   +  
Sbjct: 404 DKFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGP 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               K    R  + G I     +       +
Sbjct: 463 KIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPERFDLS 494

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI      
Sbjct: 495 YIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT---DS 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ 
Sbjct: 549 QYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRS 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    +SLEE I    +   N 
Sbjct: 609 RKDGDLGAISLEEFIEKIKNEIKNK 633


>gi|56413681|ref|YP_150756.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362604|ref|YP_002142241.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|73919824|sp|Q5PH96|SYT_SALPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689908|sp|B5BA42|SYT_SALPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56127938|gb|AAV77444.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094081|emb|CAR59581.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 642

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVIIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166223347|sp|A4G619|SYT_HERAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|133738909|emb|CAL61956.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Herminiimonas arsenicoxydans]
          Length = 635

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 153/448 (34%), Gaps = 49/448 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        + + G+  W P G      V   +R   
Sbjct: 229 EAYLTMLEE----AEKRDHRKLGRALDLFHFQEEAPGLIFWHPKGWTVWQQVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW +SG +++Y + M      N ++    P +      IF S 
Sbjct: 285 QDNGYQEVKAPQILDRSLWEKSGHWENYKENMFTTESEN-RSYALKPMNCPGHVQIFASD 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP  + +     R+E      G+MR R F   D + F  T +            
Sbjct: 344 LRSYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEDQILDECVAFTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G  ++  +  + P     S E    A+                 P E   + 
Sbjct: 403 LQKVYRDFGFTNVIYKVATRPEKRVGSDEAWDKAEAALIASLDRSGCTYEISPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G I      +S+P  +
Sbjct: 463 PKIEYTL---------------------------KDAIGRMWQCGTI---QVDFSMPARL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D  K   V +    +G+      ++  +H G   +W   +AP +I+++NI   
Sbjct: 493 GAEYVAEDNTKKIPVMLHRAILGSFERFIGMLIENHAGALPLW---LAPVQIAVLNI--- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  + +   L K G  V  D   E+I  +     +   P  +++G K      V 
Sbjct: 547 SDAQADYAQAVAQNLKKQGFRVHVDLRNEKITYKIREHSIQKLPYIIVIGDKERDAGTVA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M ++ ++   ++     
Sbjct: 607 VRARGNVDLGVMPVDLLVERLNNEVEAK 634


>gi|73540970|ref|YP_295490.1| threonyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|123732957|sp|Q472N7|SYT_RALEJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72118383|gb|AAZ60646.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Ralstonia
           eutropha JMP134]
          Length = 635

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 151/446 (33%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + +      + + + G+  W P G +    V   +R   
Sbjct: 229 EAYLHMLEE----AEKRDHRKLGKSLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW +SG + +Y + M  + +   +     P +      IF   
Sbjct: 285 TAAGYDEVRTPQVMDRSLWEKSGHWQNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    +     R+E      G+MR R F+  DA+ F  T E            
Sbjct: 344 LRSYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEEQIVAEAKAFNEL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K + ++    P     S E    A+ G      +       +P E   + 
Sbjct: 403 AFSVYDDFGFKDVAVKLSLRPAQRAGSDEVWDHAEEGLRLALRACGVDWEELPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                               K    R  + G +          + A
Sbjct: 463 PKVEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   V +    +G+      ++  +H G    W   +AP ++ ++NI    +
Sbjct: 495 EYVAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAW---LAPEQVVVMNIA---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E +   L K G     D   E+I  +     L   P  ++VG K    ++V ++
Sbjct: 549 SQAEYAENVVQSLLKQGFRAKADLRNEKITYKIREHSLQKIPYLLVVGDKERDANQVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M +   +       +N 
Sbjct: 609 ARGNVDLGVMPVSAFVERLQQDVTNK 634


>gi|225076640|ref|ZP_03719839.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
 gi|224952046|gb|EEG33255.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
          Length = 643

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 162/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNVAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVDEARAFNELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 413 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  ++A +
Sbjct: 473 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNAEY 502

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 503 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 557 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 615

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  +++++ I       ++
Sbjct: 616 KAEDLGSLNVDDFIAQLQQEITD 638


>gi|148381087|ref|YP_001255628.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932923|ref|YP_001385460.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935084|ref|YP_001388867.1| threonyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|166223333|sp|A7FY87|SYT_CLOB1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223334|sp|A5I6L8|SYT_CLOBH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148290571|emb|CAL84700.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152928967|gb|ABS34467.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152930998|gb|ABS36497.1| threonine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 635

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 162/445 (36%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L +  IH+   G   + P G    + + +  REE  
Sbjct: 228 LDEYLNMIEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHT 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ +
Sbjct: 286 KAGYQEIRTPLILNEALWHQSGHWDHYKENMY-FTNIDDDDYAIKPMNCPGGILVYKNSM 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +    
Sbjct: 345 HSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEVVGIIKLI 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +   G +   +   + P     S E   +A  G  +   S          +   +  
Sbjct: 404 DKFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGP 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               K    R  + G I     +       +
Sbjct: 463 KIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPERFDLS 494

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI      
Sbjct: 495 YIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT---DS 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ 
Sbjct: 549 QYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRS 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    +SLEE I    +   N 
Sbjct: 609 RKDGDLGAISLEEFIEKIKNEIKNK 633


>gi|161503559|ref|YP_001570671.1| threonyl-tRNA synthetase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864906|gb|ABX21529.1| hypothetical protein SARI_01637 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 622

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 592 RGKDLGSLDVNEVIEKLQQEIRSR 615


>gi|156934293|ref|YP_001438208.1| hypothetical protein ESA_02124 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532547|gb|ABU77373.1| hypothetical protein ESA_02124 [Cronobacter sakazakii ATCC BAA-894]
          Length = 453

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 43  YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 100

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 101 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 159

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 160 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIRMVYDM 218

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E    A+          +      P E   +   I 
Sbjct: 219 YSTFGFEKIVVKLSTRPEKRIGTDEMWDRAEADLAVALEENNIPFEYQPGEGAFYGPKIE 278

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 279 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 308

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 309 VGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 362

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 363 SEYVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 422

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 423 RGKDLGSLDVNDVIEKLQQEIRSR 446


>gi|152970729|ref|YP_001335838.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|330009686|ref|ZP_08306560.1| threonine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|150955578|gb|ABR77608.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328534774|gb|EGF61330.1| threonine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 622

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPQRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGENNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTW---IAPVQVVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 AEYVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKDLGSMDVNEVIEKLQQEIRSR 615


>gi|283785057|ref|YP_003364922.1| threonyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282948511|emb|CBG88100.1| threonyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 642

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 612 RGKDLGSLDVNEVIEKLQQEIRSR 635


>gi|237731269|ref|ZP_04561750.1| threonyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226906808|gb|EEH92726.1| threonyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 642

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 154/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                      D    + 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEA---------------------DLAVALE 446

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            N+I  ++     A      E              R  + G +      +SLP  +SA++
Sbjct: 447 ENNIPFEFQLGEGAFYGPKIEFTLY------DCLDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 612 RGKDLGSLDVNEVIEKLQQEIRSR 635


>gi|323493467|ref|ZP_08098589.1| threonyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323312290|gb|EGA65432.1| threonyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 642

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +RE+
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW  SG +D Y + M   +  N +     P +      IF  
Sbjct: 286 LTEYGYQEVKGPLIMDRVLWERSGHWDKYAEAMFTTSSEN-RDYALKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQDEVTSCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   + D        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLEAMDIPYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   + +    V +    +G++     ++   + G    W   ++P +  ++NI  
Sbjct: 494 LGATYVDENNERQVPVMIHRAILGSLERFIGILIEEYYGFFPTW---LSPEQAVIMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 551 KQS---DYVQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I+Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKVDDFISYIQDEISSRK 637


>gi|126306083|ref|XP_001381501.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Monodelphis domestica]
          Length = 475

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 224/439 (51%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+    +    S +LML+TG+IH    G Y +LP   +A++ +  +I +E    G  ++ 
Sbjct: 59  LESKSAEVTCKSQRLMLQTGLIHPAGPGCYHYLPYTVRAMEKLVKVIDQEMQAIGGQKLD 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLP 129
           +PTL SA+LW  + R++  GKE+ RL DR++K    GPTHEEV+T +  S    SY+ LP
Sbjct: 119 MPTLSSAELWRVTDRWNLMGKELFRLQDRHNKDYCLGPTHEEVITSLMASQKTLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           +  YQI  KFRDE RPRFG++R REF MKD Y+FD + E +  +Y+ +  +Y R+F+RLG
Sbjct: 179 YLLYQITRKFRDEPRPRFGLLRGREFYMKDMYTFDCSSEAAHQTYDLVCEAYGRVFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L+ + ++A  G IGG +SHEF +  + GE  V       +F    E  D  D        
Sbjct: 239 LQFVRVQAAVGSIGGTMSHEFQLPLNIGED-VLAVCSNCNFAANVETLDPRDPTC----- 292

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                                + + K    +G+EVGH FY GTKYS   +A F  A GK 
Sbjct: 293 --------------------PVCQGKLTETKGVEVGHTFYLGTKYSSVFNAEFINAQGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD------QVCRD 363
             ++MG YG+G  R++AA IE     + I WP  +AP+++ LI  K         ++   
Sbjct: 333 SLLEMGCYGLGVTRILAAAIEMLSMEECIRWPSLLAPYQVCLIPPKKGSKEEMGIELMGT 392

Query: 364 ACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHR 421
             + I   L ++  +V  DD     IG++   A+ LG+P  VI G +        E+  +
Sbjct: 393 LYDDITEALPQLKGEVLLDDRIHLTIGNRLKDANKLGYPFVVIAGKRASEQPCHFEVWCQ 452

Query: 422 LTGIREDMSLEEVINYASH 440
                  ++ + VI+    
Sbjct: 453 NNNEVVFLTKQAVIDLLRK 471


>gi|5911945|emb|CAB55948.1| hypothetical protein [Homo sapiens]
          Length = 409

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 143/428 (33%), Positives = 224/428 (52%), Gaps = 35/428 (8%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  A+LW
Sbjct: 3   KSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVNMPSLSPAELW 62

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKF 139
             + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LPF  YQ+  KF
Sbjct: 63  QATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQVTRKF 122

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LGL  + ++A+ 
Sbjct: 123 RDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLGLPFVKVQADV 182

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG +SHEF +  D GE ++            S N +  D+  +N    Q        
Sbjct: 183 GTIGGTVSHEFQLPVDIGEDRLAICPRCSF----SANMETLDLSQMNCPACQGP------ 232

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               +GIEVGH FY GTKYS   +A F    GK    +MG YG+
Sbjct: 233 ----------------LTKTKGIEVGHTFYLGTKYSSIFNAQFTNVCGKPTLAEMGCYGL 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKV-- 375
           G  R++AA IE       + WP  +AP++  LI  K    +Q   +   ++Y  +++   
Sbjct: 277 GVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQLYDHITEAVP 336

Query: 376 --GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSL 431
               +V  DD     IG++   A+  G+P  +I G + + D    E+  + TG    ++ 
Sbjct: 337 QLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQNTGEVAFLTK 396

Query: 432 EEVINYAS 439
           + V++  +
Sbjct: 397 DGVMDLLT 404


>gi|289578715|ref|YP_003477342.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528428|gb|ADD02780.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 635

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 154/443 (34%), Gaps = 43/443 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENMY-FTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA           +        +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSMGSDEDWELATNALISALNRVNLPYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SDKHYA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVEIKHRL 422
             + +Y RL +       DD  E+IG +   A L    P  +IVG K V    V ++ R 
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKIGYKIREAQLQKKIPYMLIVGDKEVEQGTVSLRSRK 610

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +SL E I       +  
Sbjct: 611 EGDLGAISLSEFIEKILKEIATK 633


>gi|330829614|ref|YP_004392566.1| Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Aeromonas
           veronii B565]
 gi|328804750|gb|AEB49949.1| Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Aeromonas
           veronii B565]
          Length = 642

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 151/449 (33%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    + + + G+  W   G      +   IR +
Sbjct: 227 KQLKAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFIRGK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG ++ Y + M      N +     P +      IF  
Sbjct: 285 LKEYDYQEVKGPFMMDRVLWERSGHWEKYAQAMFTTQSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIMEEVSGCIR 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G ++I ++  + P     S E    A+    +            P E   +
Sbjct: 403 MVYDVYGTFGFENIVVKLSTRPEQRIGSDEMWDRAEKALAEALELNGLKYDLQPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G +   H  V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 493 LGATYVGENNDRHVPVMIHRAILGSIERFIGILTEEYAGLFPTW---LAPTQAVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   K+   L+  G     D   E+IG +     L   P  ++ G K V   K+
Sbjct: 550 N---QADYAVKVAKALNDAGLRAKADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGKI 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R         +EE I   +      
Sbjct: 607 AVRTRKGADLGTYPVEEFIALLTQEVQTR 635


>gi|261212792|ref|ZP_05927076.1| threonyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260837857|gb|EEX64534.1| threonyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 642

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + D        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +      + +
Sbjct: 614 GKDLGKFKLDDFIEHIQAEIVSRK 637


>gi|325528727|gb|EGD05797.1| threonyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 635

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 151/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQFIAESIAFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G    W   +AP ++ ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPIQVVVMNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 ADYAQSLAQTLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPVEAFVERLQEDLRSFK 635


>gi|213650865|ref|ZP_03380918.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 622

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 592 RGKDLGSLDVNDVIEKLQQEIRSR 615


>gi|89094703|ref|ZP_01167639.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89081049|gb|EAR60285.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 639

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 157/449 (34%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD      +L L    + + + G+  W P G      +   +R++
Sbjct: 226 KALKAYLHRLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWALYQGIEQYMRQK 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                 +E+  P +    LW +SG ++ + +EM      N +     P +      ++  
Sbjct: 284 LRPRKYVEVKTPQVVERTLWEKSGHWEKFSEEMFTTHSEN-RDFAVKPMNCPCHVQVYNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I+SYR+LP    +     R+E      G+MR R F+  D + F    +  +   ++   
Sbjct: 343 GIRSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFVQDDGHIFCA-EDSIQSEVSEFID 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G + I  +  + P     S E    ++        +       +P E   +
Sbjct: 402 FLHEVYADFGFQEIQYKLSTRPEKRVGSDEVWDKSEKALADALDNAGLKWDLLPGEGAFY 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I  +                            K    R  + G +      +S+P  
Sbjct: 462 GPKIEFSL---------------------------KDCLGRVWQCGTV---QVDFSMPGR 491

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A F    G+    V +    +G+      ++  ++ G    W   +AP +  ++NI  
Sbjct: 492 LGAQFVNEQGERETPVMIHRAILGSFERFIGILIENYAGALPTW---LAPVQAVVMNITD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D CEK+   L   G     D   E+IG +     L   P  +++G K V    V
Sbjct: 549 K---QADYCEKVVQNLENKGFRAESDLRNEKIGFKIRERTLQKVPYLLVIGDKEVEAGAV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       M L+E +N      +  
Sbjct: 606 AVRTRTGEDLGSMPLDEFVNLLGSDVAKK 634


>gi|326623540|gb|EGE29885.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 622

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 592 RGKDLGSLDVNDVIEKLQQEIRSR 615


>gi|325197939|gb|ADY93395.1| threonyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 637

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|167582118|ref|ZP_02374992.1| threonyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 635

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 152/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T +             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEDQINSEAIAFNKLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMMLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G+M     ++   H G   +W   +APF   ++NI    +   + 
Sbjct: 500 DNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPFHAVVLNIA---ESQAEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AQTVVQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGI 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +          +
Sbjct: 614 DLGVMPVEAFVERLREDIQAFK 635


>gi|195937403|ref|ZP_03082785.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|261227789|ref|ZP_05942070.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258046|ref|ZP_05950579.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|320641567|gb|EFX10955.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320646926|gb|EFX15759.1| threonyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320668281|gb|EFX35108.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
          Length = 622

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 532 SEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 592 RGKDLGSMDVNEVIEKLQQEIRSR 615


>gi|300914721|ref|ZP_07132037.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
 gi|300889656|gb|EFK84802.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
          Length = 634

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENMY-FTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLF-MTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA           +        +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSMGSDEDWELATNALISALNRVNLPYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SDKHYA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       D+  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDERNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLSEFIEKILKEIATK 632


>gi|257455909|ref|ZP_05621126.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257446655|gb|EEV21681.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 642

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 163/447 (36%), Gaps = 44/447 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTMWQVLEQYMRKVQKDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG +++YG  M+       +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQIVDRSLWEKSGHWENYGD-MMFTTHSEKRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    E  K          L +
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCSN-EQIKQEAQDFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     + E   LA+        +       +P E   +   I 
Sbjct: 407 YKDFGFDDVQMKLSTRPEKRVGADELWDLAEKDLADALDNAGLDWQYLPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  + A F
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPERLGAEF 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               G ++  V +    +G+      ++   + G   +W   +AP ++ ++NI  +    
Sbjct: 497 VNEQGERERPVMLHRAILGSFERFIGMLIEHYAGWMPVW---LAPQQVVVMNITDN---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             AC+K+  +L++ G  V  D   E+IG +     L   P  +++G K V  ++V ++ R
Sbjct: 551 APACQKVAEQLNQAGLRVITDLRNEKIGFKIRERTLERIPYMIVMGDKEVESNQVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
                  MS++  I+  +   +    V
Sbjct: 611 EGDNLGVMSIDAFIDLVNQATAQKGRV 637


>gi|139948914|ref|NP_001077356.1| probable prolyl-tRNA synthetase, mitochondrial isoform 2 [Mus
           musculus]
 gi|159575933|emb|CAP19280.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 511

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 147/455 (32%), Positives = 226/455 (49%), Gaps = 44/455 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 78  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 137

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 138 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 197

Query: 114 MTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S  K SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 198 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 257

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 258 TYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHEFQLPVDIGEDRL----------- 306

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                          +V       A T  +   +      +      +GIEVGH FY  T
Sbjct: 307 ---------------VVCPSCHFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLST 351

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 352 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 411

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    +    +  EK+Y  + +       +V  DD     IG++   A+ LG+P  +I
Sbjct: 412 PPKKGSKETAATEIVEKLYDDIMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVII 471

Query: 406 VGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYAS 439
            G + + D    E+  + TG    ++ E V+   +
Sbjct: 472 AGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 506


>gi|93353957|gb|ABF08046.1| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 663

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 151/444 (34%), Gaps = 45/444 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +T     + + + G+  W P G +    V   +R    +
Sbjct: 259 YLHMLEE----AEKRDHRRLGKTLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLGQ 314

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D+Y + M  + +   +     P +      IF   ++
Sbjct: 315 AGYEEVRTPQVMDRSLWERSGHWDNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHGLR 373

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T E              
Sbjct: 374 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEEQIVEEAKAFNELAF 432

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G K + ++    P     S      A+ G      +       +P E   +   
Sbjct: 433 SIYDDFGFKDVAVKLSLRPEKRAGSDAVWDHAEDGLRLALRACGVEWEELPGEGAFYGPK 492

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                               K    R  + G +          + A +
Sbjct: 493 VEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGAEY 524

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+      ++  +H G    W   +AP ++ ++NI    +  
Sbjct: 525 VSEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAW---LAPEQVVVMNIA---ESQ 578

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G     D   E+I  +     L   P  +++G K    ++V ++ R
Sbjct: 579 SEYAENVVQLLQKQGFRAKADLRNEKITYKIREHSLQKIPYLLVIGDKERDANQVAVRAR 638

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +       S+ 
Sbjct: 639 GNVDLGVMPVSAFVERLQQDVSSK 662


>gi|262164341|ref|ZP_06032079.1| threonyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262026721|gb|EEY45388.1| threonyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 642

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + D        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +      + +
Sbjct: 614 GKDLGKFKLDDFIKHIQAEIVSRK 637


>gi|238753686|ref|ZP_04615048.1| Threonyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238708238|gb|EEQ00594.1| Threonyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 642

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 155/449 (34%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   +L  L+E   RD      +L L    + + + G+  W   G      +   +R +
Sbjct: 227 KQLNAYLQRLEEAGKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G +++Y + M   +  N +     P +      IF  
Sbjct: 285 LKEYQYQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   N    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQVRDEVNSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G + I ++  + P     S E    A+                 P E   +
Sbjct: 403 MVYDMYSTFGFEKIVVKLSTRPEKRIGSDELWTRAEDDLAAALTENGIPFDYQPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      +SLP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           +SA++ G +      V +    +G+M     ++   + G    W   +AP ++ ++NI  
Sbjct: 493 LSASYIGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---IAPVQVVVMNIT- 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +++  +L   G  V  D   E+IG +     L   P  ++ G K +   KV
Sbjct: 549 --DSQAEYVQEVTKKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEIETGKV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       + +  V++       + 
Sbjct: 607 AVRTRRGKDLGSLDVNVVVDKLLTEIRSR 635


>gi|311279396|ref|YP_003941627.1| threonyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308748591|gb|ADO48343.1| threonyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 642

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVETGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + EVI        + 
Sbjct: 612 RGKDLGSMDVNEVIEKLLQEIRSR 635


>gi|261339515|ref|ZP_05967373.1| threonine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288318328|gb|EFC57266.1| threonine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 622

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                   E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEADLAVALEENGIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPQRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G++     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGEDNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 ADYVKELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 592 RGKDLGSLDVSEVIEKLQQEIRSR 615


>gi|269102906|ref|ZP_06155603.1| threonyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162804|gb|EEZ41300.1| threonyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 643

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 93/450 (20%), Positives = 164/450 (36%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G      +   +RE+
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFVREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LNQYDYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTESQVQQEVTSCIE 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G ++I ++  + P     S     + D  E  +  + + MD P        
Sbjct: 404 MVYDTYKTFGFENIVVKLSTRPEKRVGSD---AMWDKAEADLVTALESMDIPFE------ 454

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                   I E   A Y    +       D          R  + G +      ++LP  
Sbjct: 455 --------IQEGEGAFYGPKIEFTLHDCLD----------RAWQCGTV---QLDFALPER 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G D + H  V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 494 LGATYVGEDNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTW---LAPQQAVVMNIT- 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++I  +L K G  V  D   E+IG +     L   P  ++ G + V   +V
Sbjct: 550 --DSQSEYVQEIVEKLKKCGIRVNADLRNEKIGFKIREHTLKRVPYMLVCGDQEVEAGEV 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++++ Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKIDDLVAYMQQEISSRK 637


>gi|163801061|ref|ZP_02194961.1| threonyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159175410|gb|EDP60207.1| threonyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 642

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +R +
Sbjct: 228 KALKAHLTRLEEAAKRDHRKLGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRSK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   A  N +     P +      IF  
Sbjct: 286 LDEYGYQEVKGPLIMDRVLWERSGHWDKYADAMFTTASEN-REYALKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S +        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEQRVGSDEIWDQSEEALKQSLESMEIPYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  L+NI  
Sbjct: 494 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAILMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++  +L K G     D   E+IG +     L   P  ++VG + +   ++
Sbjct: 551 KQS---DYVQEVVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I Y      + +
Sbjct: 608 AVRTRKGKDLGKFKVDDFIAYIQDEIFSRK 637


>gi|262275836|ref|ZP_06053645.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262219644|gb|EEY70960.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 642

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 153/449 (34%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G      + A +R +
Sbjct: 227 KELKAHLQRLEEAAKRDHRKLGKQLDLY--HMQQEAPGMVFWHHNGWVVFRELEAFVRSK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG +D Y   M      N +     P +      IF  
Sbjct: 285 LAEYNYQEVKGPLIMDRVLWERSGHWDKYADYMFTTQSEN-REYALKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  TPE  +        
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTPEQVQQEVTSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G + I ++  + P     S      A+    +   S +     +  E   +
Sbjct: 403 MVYDTYKTFGFEDIVVKLSTRPEMRVGSDAMWDRAEKALAEALESMNIQFEILEGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFALPER 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G D + H  V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 493 LGATYVGEDNERHTPVMIHRAILGSLERFIGILIEEYAGHFPSW---LAPQQAVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     +  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 550 N---QAEYVQEVAKKLQKAGFRASADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEI 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R         ++E I+   +     
Sbjct: 607 AVRTRKGKDLGKYKIDEFISLLENEIRTR 635


>gi|78044971|ref|YP_360408.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770579|sp|Q3ABS6|SYT_CARHZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77997086|gb|ABB15985.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 634

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 151/446 (33%), Gaps = 41/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD      +L L +  + +   G   + P G    + +    RE+  
Sbjct: 228 LTDYLNFLEEAKKRDHRKIGQELDLFS--LQEEGPGFPFFHPKGMVIRNELENFWREKHR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + + +LW  SG +  Y + M      +D+     P +      ++++ +
Sbjct: 286 LAGYQEIKTPIILNRELWERSGHWAHYKENMY-FTKIDDQDYAIKPMNCPGSILVYKNKL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR  P    ++ L  R EL     G+MR R F   DA+ F L PE  K     +    
Sbjct: 345 HSYREFPIRLAELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PEQVKDEIIGVINLI 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G +   +   + P     S E   LA     +    +         +   +  
Sbjct: 404 DEFYRLFGFEY-HVELSTRPENSMGSDELWELATNSLKEALEERGLPYKINEGDGAFYGP 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               K    R  + G I     +       T
Sbjct: 463 KIDF---------------------------HLKDCLGRTWQCGTI-QLDFQMPEKFDLT 494

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +     G++     ++   + G   +W   ++P ++ +I +    + 
Sbjct: 495 YIGEDGQKHRPVMIHRVVFGSIERFIGILIEHYAGAFPVW---LSPVQVRVITVA---ER 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R+  ++IY +L   G  V  DD  E IG +     +   P  +IVG K +    V ++ 
Sbjct: 549 HREYGQEIYQKLFNQGVRVELDDRNETIGYKIREGQMQKIPYLLIVGDKEIEQGSVAVRK 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G        E I          R
Sbjct: 609 RGVGDLGQKPFAEFIEELLAEIREKR 634


>gi|291085451|ref|ZP_06353132.2| threonine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291071041|gb|EFE09150.1| threonine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 622

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 154/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                      D    + 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEA---------------------DLAVALE 426

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            N+I  ++     A      E              R  + G +      +SLP  +SA++
Sbjct: 427 ENNIPFEFQLGEGAFYGPKIEFTLY------DCLDRAWQCGTV---QLDFSLPSRLSASY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 592 RGKDLGSLDVNEVIEKLQQEIRSR 615


>gi|262403446|ref|ZP_06080004.1| threonyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262349950|gb|EEY99085.1| threonyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 642

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + +        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMEIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +      + +
Sbjct: 614 GKDLGKFKLDDFIKHIQAEIVSRK 637


>gi|168183457|ref|ZP_02618121.1| threonine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796594|ref|YP_002864146.1| threonyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259516348|sp|C3KTK0|SYT_CLOB6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|182673322|gb|EDT85283.1| threonine--tRNA ligase [Clostridium botulinum Bf]
 gi|229263282|gb|ACQ54315.1| threonine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 635

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 96/447 (21%), Positives = 166/447 (37%), Gaps = 44/447 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L +  IH+   G   + P G    + +    R
Sbjct: 224 KKSELDEYLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNILENFWR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++
Sbjct: 282 EEHTKAGYQEIRTPLILNEALWHQSGHWDHYKENMY-FTNIDDGDYAIKPMNCPGGILVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +
Sbjct: 341 KNSMHSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEIVGI 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                + +   G +   +   + P     S E   +A  G  +   S          +  
Sbjct: 400 IKLIDKFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGA 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               K    R  + G I     +    
Sbjct: 459 FYGPKIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPER 490

Query: 298 MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++ GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI  
Sbjct: 491 FDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT- 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV
Sbjct: 547 --DAQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKV 604

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R  G    +SLEE I    +   
Sbjct: 605 AVRSRKDGDLGAISLEEFIEKIKNEIK 631


>gi|297579610|ref|ZP_06941537.1| threonyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297535256|gb|EFH74090.1| threonyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 642

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + D        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAIVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +     ++ +
Sbjct: 614 GKDLGKFKLDDFIAHIQAEIASRK 637


>gi|226950568|ref|YP_002805659.1| threonine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|254783516|sp|C1FKN0|SYT_CLOBJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226841746|gb|ACO84412.1| threonine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 635

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 162/445 (36%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L +  IH+   G   + P G    + + +  REE  
Sbjct: 228 LDEYLNMIEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHT 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ +
Sbjct: 286 KAGYQEIRTPLILNEALWHQSGHWDHYKENMY-FTNIDDGDYAIKPMNCPGGILVYKNSM 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +    
Sbjct: 345 HSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEIVGIIKLI 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +   G +   +   + P     S E   +A  G  +   S          +   +  
Sbjct: 404 DKFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGP 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               K    R  + G I     +       +
Sbjct: 463 KIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPERFDLS 494

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI      
Sbjct: 495 YIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT---DS 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ 
Sbjct: 549 QYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRS 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    +SLEE I    +   N 
Sbjct: 609 RKDGDLGAISLEEFIEKIKNEIKNK 633


>gi|241663242|ref|YP_002981602.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240865269|gb|ACS62930.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 635

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 157/446 (35%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I ++S G   W P G      +   +R   
Sbjct: 229 EAYLHMLEE----AEKRDHRKLGRELDLFHIDEYSPGTVFWHPKGWTLWQEIEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y + M  + +   +     P +      I++  
Sbjct: 285 RENGYQEVKGPQILDKTLWEKTGHWDKYRENMF-ITESEKREYALKPMNCPGHILIYKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  F +     R+E      G+MR R F   D + F  T +  +         
Sbjct: 344 IKSYRDLPLRFGEFGACHRNEPSGGLHGIMRVRGFTQDDGHIF-CTEDMIQAEVTAFTTL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     + E    A+    +   +       +P E   + 
Sbjct: 403 LQKVYKDFGFTEILYKLSTRPDKRIGTEESWDRAEAALAEGLRASGCEFEYLPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I                               K    R  + G I          + A
Sbjct: 463 PKIEY---------------------------VLKDALGRQWQCGTI-QVDPNLPERLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F G DG  H  + +    +G++     ++   + G    W   ++P ++++++I     
Sbjct: 495 EFVGEDGARHRPIMLHRAIVGSLERFIGILIEQYAGALPTW---LSPVQVAVLSIT---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   L K G     D   E+IG +     +   P Q++VG K   +++V ++
Sbjct: 549 SHAEYAQSVVQSLQKQGFRAVVDLRNEKIGYKIREHSVQKVPYQIVVGDKERDENQVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M L   +    +  +N 
Sbjct: 609 ARGNVDLGSMPLSAFVERLQNDLANK 634


>gi|161621305|ref|YP_583315.2| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 635

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 151/444 (34%), Gaps = 45/444 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +T     + + + G+  W P G +    V   +R    +
Sbjct: 231 YLHMLEE----AEKRDHRRLGKTLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLGQ 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D+Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYEEVRTPQVMDRSLWERSGHWDNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T E              
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEEQIVEEAKAFNELAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G K + ++    P     S      A+ G      +       +P E   +   
Sbjct: 405 SIYDDFGFKDVAVKLSLRPEKRAGSDAVWDHAEDGLRLALRACGVEWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                               K    R  + G +          + A +
Sbjct: 465 VEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+      ++  +H G    W   +AP ++ ++NI    +  
Sbjct: 497 VSEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAW---LAPEQVVVMNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G     D   E+I  +     L   P  +++G K    ++V ++ R
Sbjct: 551 SEYAENVVQLLQKQGFRAKADLRNEKITYKIREHSLQKIPYLLVIGDKERDANQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +       S+ 
Sbjct: 611 GNVDLGVMPVSAFVERLQQDVSSK 634


>gi|119476522|ref|ZP_01616873.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119450386|gb|EAW31621.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 645

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 161/454 (35%), Gaps = 55/454 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + +      + + + G+  W P G      + + +RE+Q
Sbjct: 229 KAYLHRLEE----AEKRDHRKLGKKYDLFHMQEEAPGMVFWHPKGWSIYTTIESYMREQQ 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P L    LW +SG  D +G +M  L + + +     P +      IF   
Sbjct: 285 TLNNYQEIKTPQLVDFSLWQKSGHADKFGDDMFTL-EADGRDFAIKPMNCPCHVQIFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +     
Sbjct: 344 LKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFVQDDAHIF-ATENQIQPEVSVFIDF 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G   +  R  + P     + E    A+        SK      +P E   + 
Sbjct: 403 LHSVYEDFGFSDVIYRLSTRPEQRVGTDESWDKAEKALADALNSKGLPWEELPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP 297
             I  +                                     +G ++  GT    +S+P
Sbjct: 463 PKIEFSLKDC---------------------------------IGRVWQLGTIQVDFSMP 489

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A +   DG     V +    +G+      ++   ++G    W   +AP ++ + NI
Sbjct: 490 GRLDAQYVAEDGSRQTPVMLHRAILGSFERFIGILIEHYEGAFPTW---LAPTQVVIANI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      +K++  L   G  V  D   E+IG +     +   P  ++VG K + + 
Sbjct: 547 TDK---QAPYVKKVHQSLKNSGIRVDADLRNEKIGFKIREHIIQKVPYLLVVGDKEIENQ 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            V ++ R       MSLE      +   +    V
Sbjct: 604 TVAVRARNGEDLGSMSLEAFEQILNEDVARRGRV 637


>gi|99034562|ref|ZP_01314532.1| hypothetical protein Wendoof_01000659 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 339

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 171/358 (47%), Positives = 240/358 (67%), Gaps = 19/358 (5%)

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R  +KSY++LP   YQIQ KFRDE+
Sbjct: 1   GRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRDVVKSYKDLPLCLYQIQWKFRDEV 60

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +Y++IF R+G   I +RA++GPIG
Sbjct: 61  RPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKTYIKIFKRMGFTPIGVRADTGPIG 120

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G+LSHEF +LA+TGE+ ++    F +     +      I             YA   D+H
Sbjct: 121 GNLSHEFHILANTGESTLYYDNKFSELLESEDIESLKSI-------------YAVADDMH 167

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + +    + + +   ++GIE+GHIFYFG KYS PM A+    DGK+  + MGSYGIG  R
Sbjct: 168 DPETC-PISQEQLNVSKGIEIGHIFYFGDKYSKPMKASVTSQDGKNVNIHMGSYGIGVSR 226

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +V A+IE+ HD KGIIWP+ VAPF+I LIN++       +A +KIY  L     +V +DD
Sbjct: 227 LVGAIIEAFHDDKGIIWPEEVAPFRIGLINLQTK---VTEAADKIYKALKSD--EVLYDD 281

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               +G +F+  DL+G P Q+IVG K VS++ VE+K+R TG  ++M +EE IN+ S +
Sbjct: 282 TEGSVGVKFSRMDLIGLPWQIIVGKKAVSENIVEVKNRATGEVKEMQIEEAINHFSAK 339


>gi|92113922|ref|YP_573850.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
 gi|123387452|sp|Q1QWK7|SYT_CHRSD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91797012|gb|ABE59151.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
          Length = 632

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+ + R      + + + G+  W P G      V   +R
Sbjct: 226 KALKTYLKRLEE----AEKRDHRKLARKLDFFHMQEEAPGMVFWHPRGWTLWQTVEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                +G  E+  P +    LW +SG +D+Y + M    +   +     P +      +F
Sbjct: 282 GVYKDSGYQEIRCPQIMDVSLWQKSGHWDNYAENMF-FTESEKREYALKPMNCPGHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S ++SYR LP  + +     R+E      G+MR R F   D + F  T E  +      
Sbjct: 341 NSGLRSYRELPVRYGEFGGCHRNEPSGALHGIMRVRAFTQDDGHVF-CTEEQIEPEVTAF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I ++    P     S +    A+          D     +P E  
Sbjct: 400 HRQALAVYRDFGFDDIAVKIALRPEKRLGSDDNWDRAEEALRNALSRCDVEWEELPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       + D L    +V    ++       G      
Sbjct: 460 FYGPKIEY--------------------HMRDCLGREWQVGTMQVDFMMPTRLG------ 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   DG     V +    +G+M     ++   + G   +W   ++P +  ++NI  
Sbjct: 494 --AQYVAEDGSRQAPVMLHRAIVGSMERFIGILIEHYAGSMPLW---LSPLQAVVLNIT- 547

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+  E +  RL K G  V  D   E+IG +     L   P  ++VG K V    V
Sbjct: 548 --DAQREYAESVTQRLQKSGLRVKTDLRNEKIGFKIREHTLQKIPYLLVVGDKEVEAGAV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ R       +S++ +I      
Sbjct: 606 AVRTRSGEDLGSLSVDALIARLQEE 630


>gi|205352944|ref|YP_002226745.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238690498|sp|B5RAX3|SYT_SALG2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|205272725|emb|CAR37641.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628018|gb|EGE34361.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 642

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMGRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|83719712|ref|YP_443111.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167620276|ref|ZP_02388907.1| threonyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|123767616|sp|Q2SVD8|SYT_BURTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83653537|gb|ABC37600.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 635

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 151/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEEAPGMVFWHPKGWTLWQRVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T +             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEDQINSEAIAFNKLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMMLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G+M     ++   H G    W   +APF   ++NI    +   + 
Sbjct: 500 DNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPFHAVVLNIA---ESQAEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AQTVVQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +          +
Sbjct: 614 DLGVMPVEAFVERLREDIQAFK 635


>gi|170754255|ref|YP_001782772.1| threonyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|229557978|sp|B1IMV3|SYT_CLOBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169119467|gb|ACA43303.1| threonyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 635

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/449 (21%), Positives = 167/449 (37%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L +  IH+   G   + P G    + + +  R
Sbjct: 224 KKSELDEYLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++
Sbjct: 282 EEHTKAGYQEIRTPLILNEALWHQSGHWDHYKENMY-FTNIDDGDYAIKPMNCPGGILVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +
Sbjct: 341 KNSMHSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEVVGI 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                + +   G +   +   + P     S E   +A  G  +   S          +  
Sbjct: 400 IKLIDKFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLKEALDSIGKEYRVNEGDGA 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               K    R  + G I     +    
Sbjct: 459 FYGPKIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPER 490

Query: 298 MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++ GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI  
Sbjct: 491 FDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT- 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV
Sbjct: 547 --DAQYDYLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKV 604

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    +SLEE I    +     
Sbjct: 605 AVRSRKDGDLGAISLEEFIEKIKNEIKAK 633


>gi|294789007|ref|ZP_06754247.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483109|gb|EFG30796.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 638

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 159/443 (35%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E    G
Sbjct: 232 YITRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPRGWALWQVIEQHMRHELTAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M  L     +     P +      IF   ++SY
Sbjct: 290 YQEVKTPQVMDKTFWEKSGHWANYKDNMF-LTSSEKRDYAVKPMNCPGHVQIFNHALRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +       K  +  ++I
Sbjct: 349 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIAEETRKFNLLVMKI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G +++ ++    P     S E    A+ G      +       +P E   +   + 
Sbjct: 408 YQQFGFENVSIKLSLRPEKRAGSDEIWDKAEQGLRDALTACGVEWEELPGEGAFYGPKVE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      + LP  + A +
Sbjct: 468 Y---------------------------HIKDALGRSWQCGTI---QLDFVLPERLDAEY 497

Query: 303 KGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  K   V +    +G++     ++   H G   +W   +AP ++ ++NI    +  
Sbjct: 498 VTEDNNKARPVMLHRAILGSLERFIGILIEEHAGSFPLW---LAPVQMVVMNI---SEGQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A+L   G  V  D   E+IG +      + +P Q+ VG K +++ +V I+ +
Sbjct: 552 AAYAAEVQAKLQAAGFRVDLDTRNEKIGYKIRDNSTMRYPYQLTVGDKEMANGQVSIRKK 611

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  +S+ E+I       + 
Sbjct: 612 AEN-LGSVSVNELIEMLKKEIAE 633


>gi|188533977|ref|YP_001907774.1| threonyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|238689736|sp|B2VEM1|SYT_ERWT9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188029019|emb|CAO96887.1| Threonyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 642

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYE 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    ++                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWDRSEADLAAALKENGIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G   +    V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VGESNERQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNITDGQS-- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 553 -EYVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 612 RGKDLGSIDVNEVIAKLQDEIRSR 635


>gi|329118120|ref|ZP_08246832.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465780|gb|EGF12053.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 640

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 160/444 (36%), Gaps = 45/444 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+E +  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPRGWALWQAIEQHMRKELDAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W  SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YREVKTPQIMDKTFWERSGHWDNYKDNMF-VTQSEKREYAVKPMNCPGHVQIFNNSLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +       +     +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVEEARRFNELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G      +       +P E   +   I 
Sbjct: 413 YKQFGFHDVAVKLSLRPEKRAGSDDIWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 473 Y---------------------------HVKDAIGRSWQCGT---LQLDFVLPERLDAEY 502

Query: 303 KGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +G+   V +    +G++     ++  +H G   +W   +AP ++ ++NI  H    
Sbjct: 503 VTESNGRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVVMNITEH---Q 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C K+  +L   G  V  D   E+IG +        FP Q++VG K   + +V ++ R
Sbjct: 557 ADYCRKVVEKLRAEGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKENGQVAVR-R 615

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +++ I       + +
Sbjct: 616 KAEDLGSLKVDDFIAQLKREIAES 639


>gi|78066086|ref|YP_368855.1| threonyl-tRNA synthetase [Burkholderia sp. 383]
 gi|123756187|sp|Q39H55|SYT_BURS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77966831|gb|ABB08211.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           sp. 383]
          Length = 635

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 152/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFDHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLTWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMVLPERLGAEY-------VAD 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   V +    +G+M     ++   H G    W   +APF+  ++NI    +   + 
Sbjct: 500 DSSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPFQAVVLNIA---ESQAEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AQSLAQSLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +        + +
Sbjct: 614 DLGVMPVEAFVERLQEDLRSFK 635


>gi|258623264|ref|ZP_05718271.1| threonyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|262173542|ref|ZP_06041219.1| threonyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|258584450|gb|EEW09192.1| threonyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|261890900|gb|EEY36887.1| threonyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 642

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + +        E   +   I  
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMEIPFEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +      + +
Sbjct: 614 GKDLGKFKLDDFIKHIQAEIVSRK 637


>gi|297250596|ref|ZP_06864620.2| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838509|gb|EFH22447.1| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 648

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 163/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  ++A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPIQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  +++++ +       ++
Sbjct: 621 KAEDLGSLNVDDFVAQLQQEITD 643


>gi|238027731|ref|YP_002911962.1| threonyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876925|gb|ACR29258.1| Threonyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 635

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 152/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD    + +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLAKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F   ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFIAESI-AFNELAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFDQISIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLAWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMVLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +G+   V +    +G+M     ++   H G    W   +AP +  ++NI    +   D 
Sbjct: 500 DNGRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPVQAIVMNIA---ENQADY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AGSLAQSLQKQGLRVEADLRNEKISYKIREHALEKVPYLLVVGDKEREAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  + +        +
Sbjct: 614 ELGVMPVEAFVEHLQQDLRAFK 635


>gi|284799642|ref|ZP_05984463.2| threonine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284797591|gb|EFC52938.1| threonine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 643

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 160/440 (36%), Gaps = 45/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCAEDQIVDEA-RAFNELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 413 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  ++A +
Sbjct: 473 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNAEY 502

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 503 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 557 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 615

Query: 422 LTGIREDMSLEEVINYASHR 441
                  +++++ I      
Sbjct: 616 KAEDLGSLNVDDFIAQLQQE 635


>gi|167570156|ref|ZP_02363030.1| threonyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 635

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 151/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + S G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAVKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQINSEAIAFNKLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G  +   +       +P E   +   I 
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEDGLRKALKACGVEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMMLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G+M     ++   H G    W   +AP    ++NI    +   + 
Sbjct: 500 DNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPAHAVVLNIA---ESQVEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AQTVAQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +          +
Sbjct: 614 DLGVMPVEAFVERLREDIQAFK 635


>gi|224826514|ref|ZP_03699615.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224601115|gb|EEG07297.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 632

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 45/444 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L    +   + G+  W P G +   +V   +R    
Sbjct: 228 LAQYLYMLEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWQLWQSVEQYMRATLA 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P +    LW +SG +++Y + M        +     P +      +F   +
Sbjct: 286 EAGYQEIRTPMVMDRILWEKSGHWENYRENMFTTESEK-RDYAVKPMNCPGHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  + +     R+E      G+MR R F+  DA+ F  T E             
Sbjct: 345 RSYRDLPLRYAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEEQIIDEAKAFNELT 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +R++ + G  ++ ++    P     + E    A+ G  +   +       +P E   +  
Sbjct: 404 MRVYRQFGFDNVSVKLSLRPEKYSGTLEAWDRAENGLREALRACGIEWEELPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                               K    R  + G        Y LP  + 
Sbjct: 464 KIEY---------------------------HIKDALGRSWQCGT---LQLDYVLPERLG 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   D  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    
Sbjct: 494 AEYVAEDNSRKRPVMLHRAILGSLERFLGILIENHAGAFPLW---LAPVQMVVMNIT--- 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D    +   L K G  V  D   E+I  +     L   P Q+IVG K  +D  + +
Sbjct: 548 EAQADYAASVVQTLKKQGFRVELDLRNEKISYKIREHSLQKLPYQIIVGDKEKADGLIAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R       ++L++ +       
Sbjct: 608 RARGE-DLGQLTLDDFVARLKAEM 630


>gi|146311380|ref|YP_001176454.1| threonyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166987323|sp|A4W9M3|SYT_ENT38 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145318256|gb|ABP60403.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Enterobacter
           sp. 638]
          Length = 642

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLVRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T    +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEGQVRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPQRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G++     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERQIPVMIHRAILGSIERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 ADYVKELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EVI        + 
Sbjct: 612 RGKDLGSLDVNEVIEKLRLEIRSR 635


>gi|167562968|ref|ZP_02355884.1| threonyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 635

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 151/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + S G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAVKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQINSEAIAFNKLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G  +   +       +P E   +   I 
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEDGLRKALKACGVEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMMLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G+M     ++   H G    W   +AP    ++NI    +   + 
Sbjct: 500 DNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPAHAVVLNIA---ESQVEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AQTVAQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +          +
Sbjct: 614 DLGVMPVEAFVERLREDIQAFK 635


>gi|153938058|ref|YP_001392415.1| threonyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|166223335|sp|A7GI05|SYT_CLOBL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|152933954|gb|ABS39452.1| threonine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320405|gb|ADG00783.1| threonine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 635

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 161/445 (36%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L +  IH+   G   + P G    + + +  RE+  
Sbjct: 228 LDEYLNMIEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREKHT 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  LW +SG +D Y + M    + +D      P +      +++S +
Sbjct: 286 KAGYQEIRTPLILNEALWHQSGHWDHYKENMY-FTNIDDGDYAIKPMNCPGGILVYKSSM 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +    
Sbjct: 345 HSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEVIGIIKLI 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G +   +   + P     S E   +A  G  +   S          +   +  
Sbjct: 404 DEFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGAFYGP 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               K    R  + G I     +       +
Sbjct: 463 KIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPERFDLS 494

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI      
Sbjct: 495 YIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT---DS 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ 
Sbjct: 549 QYDYLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRS 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    +SLEE I    +   N 
Sbjct: 609 RKDGDLGAISLEEFIEKIKNEIKNK 633


>gi|325127774|gb|EGC50682.1| threonyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 637

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  ++A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|170759804|ref|YP_001788457.1| threonyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|238688792|sp|B1L0T7|SYT_CLOBM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169406793|gb|ACA55204.1| threonine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 635

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/447 (21%), Positives = 167/447 (37%), Gaps = 44/447 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L +  IH+   G   + P G    + + +  R
Sbjct: 224 KKSELDEYLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNILESFWR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++
Sbjct: 282 EEHTKAGYQEIRTPLILNEALWHQSGHWDHYKENMY-FTNIDDGDYAIKPMNCPGGILVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +
Sbjct: 341 KNSMHSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEIVGI 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                + +   G +   +   + P     S E   +A  G  +   S          +  
Sbjct: 400 IKLIDKFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGA 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               K    R  + G I     +    
Sbjct: 459 FYGPKIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPER 490

Query: 298 MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++ GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI  
Sbjct: 491 FDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT- 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV
Sbjct: 547 --DAQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKIPYMLILGDKEVEAGKV 604

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R  G    +SLEE I    +   
Sbjct: 605 AVRSRKDGDLGAISLEEFIEKIKNEIK 631


>gi|328472989|gb|EGF43837.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 642

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +R++
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRDK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LNEYDYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S +        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLESMEIPYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  L+NI  
Sbjct: 494 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVLMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    ++I  +L K G     D   E+IG +     L   P  ++VG + +   ++
Sbjct: 551 KQSG---YVQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKVDDFIAYIQDEISSRK 637


>gi|59800743|ref|YP_207455.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|73919809|sp|Q5F9U4|SYT_NEIG1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|59717638|gb|AAW89043.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 637

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|254804601|ref|YP_003082822.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668143|emb|CBA04768.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 637

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 159/443 (35%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 407 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|254252558|ref|ZP_04945876.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895167|gb|EAY69047.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 635

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 151/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQFIAESIAFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +AP +  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPIQAVVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQTLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M ++  +        + +
Sbjct: 611 GGVDLGVMPVDAFVERLQEDLRSFK 635


>gi|28898054|ref|NP_797659.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362413|ref|ZP_05775365.1| threonine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260878403|ref|ZP_05890758.1| threonine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|31340445|sp|Q87Q70|SYT_VIBPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28806268|dbj|BAC59543.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308091059|gb|EFO40754.1| threonine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308115583|gb|EFO53123.1| threonine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 642

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +R++
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRDK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LNEYDYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S +        E   +
Sbjct: 404 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLESMEIPYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  L+NI  
Sbjct: 494 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVLMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    ++I  +L K G     D   E+IG +     L   P  ++VG + +   ++
Sbjct: 551 KQSG---YVQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKVDDFIAYIQDEISSRK 637


>gi|332971649|gb|EGK10599.1| threonine--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 637

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 158/443 (35%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E    G
Sbjct: 232 YITRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPRGWALWQVIEQHMRRELTEAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M  L     +     P +      IF   ++SY
Sbjct: 290 YQEVKTPQVMDKTFWEKSGHWANYKDNMF-LTSSEKREYAVKPMNCPGHVQIFNHGLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +          +  ++I
Sbjct: 349 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIAEETKAFNLLVMKI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G K++ ++    P     S E    A+ G      +       +P E   +   + 
Sbjct: 408 YQQFGFKNVSIKLSLRPEKRAGSEEIWDKAEQGLRDALTACGVEWEELPGEGAFYGPKVE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      + LP  + A +
Sbjct: 468 Y---------------------------HIKDALGRSWQCGTI---QLDFVLPERLEAEY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  K   V +    +G++     ++   H G   +W   +AP ++ ++NI    +  
Sbjct: 498 VAEDNTKKRPVMLHRAILGSLERFIGILIEEHAGSFPLW---LAPVQMVVMNIT---EKQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++ A+L   G  V  D   E+IG +      + +P Q+ VG K + + +V I+ +
Sbjct: 552 ADYAKEVQAKLQAAGFRVDLDIRNEKIGYKIRSNSEMRYPYQLTVGDKEMENGQVSIRKK 611

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  +S++E I         
Sbjct: 612 ADN-LGSVSVDEFIAMLQDELKQ 633


>gi|237745470|ref|ZP_04575950.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229376821|gb|EEO26912.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 650

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 153/447 (34%), Gaps = 49/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R          + G+  W P G      V   +R+    
Sbjct: 246 YLHMLEE----AEKRDHRRLGRSLDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRKVYRD 301

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +D+Y + M      N +     P +      I+RS++ 
Sbjct: 302 NGYQEVKGPQILDRSLWEKSGHWDNYKENMFTTESEN-RVYAIKPMNCPGHVQIYRSNLH 360

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F  T +              
Sbjct: 361 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEDQILDECVAFTDLLK 419

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P     S E    A+    +            P +   +   
Sbjct: 420 KVYKDFGFTDIIYKVATRPEKRVGSDEAWDKAENALIESLKRSGCEFELSPGDGAFYGPK 479

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SA 300
           I                               +    R  + G I      +S+PM   A
Sbjct: 480 IEYTL---------------------------RDAIGRMWQCGTI---QVDFSMPMRLGA 509

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D      V +    +G++     ++  +H G   +W   +AP +  ++NI     
Sbjct: 510 EYVAEDNTRKIPVMIHRAILGSLERFIGILIENHAGAMPLW---LAPVQAVVLNI---SD 563

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   + K G  V  D   E+I  +     +   P  ++VG K  + + V ++
Sbjct: 564 AQAEYAKSVVETMKKAGLRVEADLRNEKITYKIRDHSVNKVPYLLVVGDKEKNGNTVAVR 623

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R       MS +E+I    +     +
Sbjct: 624 ARGGVDLGAMSADELIARMENEIRAKQ 650


>gi|288576250|ref|ZP_05978464.2| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288565905|gb|EFC87465.1| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 643

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G      +       +P E   +   I 
Sbjct: 413 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLRDALTACGVEWDELPGEGAFYGPKIE 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 473 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 502

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 503 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 557 ADYCCEVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 615

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 616 KAEDLGSLDLDDFIARLQQEIAD 638


>gi|187776940|ref|ZP_02993413.1| hypothetical protein CLOSPO_00484 [Clostridium sporogenes ATCC
           15579]
 gi|187775599|gb|EDU39401.1| hypothetical protein CLOSPO_00484 [Clostridium sporogenes ATCC
           15579]
          Length = 635

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 96/449 (21%), Positives = 168/449 (37%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L +  IH+   G   + P G    + + +  R
Sbjct: 224 KKSELDEYLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++
Sbjct: 282 EEHTKAGYQEIRTPLILNEALWHQSGHWDHYKENMY-FTNIDDGDYAIKPMNCPGGILVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYR+LP    ++ +  R EL     G+MR R F   DA+ + +T E  K     +
Sbjct: 341 KNSMHSYRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLY-MTKEQIKEEVVGI 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                + +   G +   +   + P     S E   +A  G  +   S          +  
Sbjct: 400 IKLIDKFYKLFGFEYF-VELSTRPEDSMGSDEDWEIATNGLREALDSIGKEYRVNEGDGA 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               K    R  + G I     +    
Sbjct: 459 FYGPKIDF---------------------------HLKDCIGRTWQCGTI-QLDFQMPER 490

Query: 298 MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++ GADG+ H   M      G++     ++   + G    W   +AP ++ L+NI  
Sbjct: 491 FDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTW---LAPVQVKLMNIT- 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV
Sbjct: 547 --DSQYDYLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKV 604

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    +SLEE I    +   + 
Sbjct: 605 AVRSRKDGDLGAISLEEFIEKIKNEIKDK 633


>gi|331007295|ref|ZP_08330496.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418902|gb|EGG93367.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 640

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 160/449 (35%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L  L+E   RD      K       + + + G+  W P G      +   +R+ 
Sbjct: 227 KKLKAHLHFLEEAVKRDHRKLGKKFDYF--HMQEEAPGMVFWHPKGWSIYATIEEYMRKV 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G  E+  P +    LW  SG +D +   M  +   + +     P +      +F  
Sbjct: 285 QRDNGYKEIKTPQVVDRSLWERSGHWDKFRDNMFTVESES-RDYAIKPMNCPCHVQVFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSY+ LP    +     R+E      G+MR R F+  DA+ F  + E  +   +    
Sbjct: 344 GLKSYKELPLRLAEFGSCHRNEASGTLQGLMRVRGFVQDDAHIF-CSEEAIQEEVSVFTD 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +++   G   + +R  + P     + E    A+        +K      +P E   +
Sbjct: 403 LLYKVYADFGFSDVIIRLSTRPEQRVGTEEGWDKAEKALADALDAKGLPWEELPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I  +                            +    R  + G I      +S+P  
Sbjct: 463 GPKIEFSL---------------------------RDCLNRVWQCGTI---QVDFSMPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A +   DG     V +    +G+      ++   ++G    W   +AP +++++NI  
Sbjct: 493 LDAQYVAEDGSRQVPVMLHRAILGSFERFIGILIEHYEGAFPTW---LAPEQVAILNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     +  +K    L   G  V  D   E+IG +     L   P  +++G K V ++ +
Sbjct: 550 NQS---EYVQKTEKALRDKGFRVISDLRNEKIGFKIREHTLQRIPYLLVIGDKEVENNAL 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       MS++  + + +    N 
Sbjct: 607 AVRTRTGEDLGVMSIDAFVAHLNADVENK 635


>gi|241758603|ref|ZP_04756718.1| threonine--tRNA ligase [Neisseria flavescens SK114]
 gi|241321255|gb|EER57427.1| threonine--tRNA ligase [Neisseria flavescens SK114]
          Length = 637

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNVAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVDEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 407 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  ++A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++  +L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAVKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + +++ I       ++
Sbjct: 610 KAEDLGSLDVDDFIAQLQQEITD 632


>gi|269213639|ref|ZP_05982445.2| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269145722|gb|EEZ72140.1| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 643

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVDEARAFNELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 413 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  ++A +
Sbjct: 473 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLNAEY 502

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 503 VTEKNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 557 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 615

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  +++++ I       ++
Sbjct: 616 KAEDLGSLNVDDFIAQLQQEITD 638


>gi|238783384|ref|ZP_04627407.1| Threonyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238715629|gb|EEQ07618.1| Threonyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 642

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A++                P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEQWTRAESDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSIERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLAEIRSR 635


>gi|304397616|ref|ZP_07379493.1| threonyl-tRNA synthetase [Pantoea sp. aB]
 gi|304354788|gb|EFM19158.1| threonyl-tRNA synthetase [Pantoea sp. aB]
          Length = 642

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQVRDEVNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E    A+          +      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGTDEMWDRAEEDLAAALNENNIEFEFQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  + AT+
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPKRLEATY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPLQVVVMNITDG---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVESLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M ++  +        + 
Sbjct: 612 RGKDLGSMDVDVFVAKLQQEVRSR 635


>gi|323704478|ref|ZP_08116056.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535940|gb|EGB25713.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 634

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 157/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLNMLEEAKKRDHRKLGKELDLFS--IHNEGPGFPFFHPKGMILRNILEDFWRKEHAKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M      +D+     P +      ++ S + SY
Sbjct: 288 YQEIKTPIILNEELWHRSGHWDHYKENMY-FTKIDDEDYAIKPMNCPGALLVYNSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TP+  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGALHGLMRVRSFTQDDAHLF-MTPDQVESEILGVIKLIDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   LA     +              +   +   I 
Sbjct: 406 YKIFGFEYF-VELSTRPENSIGSDEDWELATNALIKAMEHIGLNYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +     +  + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFNCEYVG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++    A++  +  G    W   +AP ++ ++ I         
Sbjct: 497 DDGEKHRPVMLHRVVFGSIERFIAILTENFAGAFPTW---LAPVQVKILPI---SDKHLA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I+ RL +    V  DD  E+IG +   A +   P  +I+G K V    V ++ R  
Sbjct: 551 YAQNIHERLLENDIRVELDDRNEKIGYKIREAQMQKIPYMLILGDKEVEAGNVSVRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SL+E ++         
Sbjct: 611 GDLGSKSLQEFLSSILEEIKQK 632


>gi|268681605|ref|ZP_06148467.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268621889|gb|EEZ54289.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 637

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|325137877|gb|EGC60452.1| threonyl-tRNA synthetase [Neisseria meningitidis ES14902]
          Length = 637

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 159/443 (35%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 407 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|240122983|ref|ZP_04735939.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 648

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|114319929|ref|YP_741612.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312208|sp|Q0AAL5|SYT_ALHEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114226323|gb|ABI56122.1| Ser-tRNA(Thr) hydrolase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 641

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 157/449 (34%), Gaps = 49/449 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L     +AE   H+ + R      + + + G+  W P G +    V   IR
Sbjct: 226 KQLKAYLHRL----AEAEKRDHRRIGRAQNLFHLQEEAPGMAFWHPKGWQIYLEVQEYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G  E+  P L    LW +SG +D +   M  + +   +     P +      ++
Sbjct: 282 RLTRGHGYQEIHTPQLVDRSLWEKSGHWDKFQDNMF-ITESESRDYAVKPMNCPCHVQVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T +  +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGTLHGLMRVRNFVQDDAHIF-CTEDQIQQEVADF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                + ++  G   + +   + P            A+    +            P E  
Sbjct: 400 IDLVFKAYNDFGFDDVIIALSTRPDERVGEDALWDKAEHALEEALNRAGLEWQLQPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               K    R  ++G I      +S+P
Sbjct: 460 FYGPKIEFTL---------------------------KDCLGRTWQLGTI---QVDFSMP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   DG K   V +    +G++     ++   + G     P  +AP +  ++NI
Sbjct: 490 GRLGATYVAEDGSKKVPVMLHRAILGSLERFIGILIEHYAGA---LPPWLAPVQAVVLNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   +I  R  + G  V  D   E+IG +     L   P  ++VG K V ++
Sbjct: 547 TDR---QGEYARRIEKRFRERGLRVDADLRNEKIGFKIREHTLQKVPYMLVVGDKEVENN 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V ++ R       M++++ +       +
Sbjct: 604 TVAVRTREGQDLGSMAVDDFLQRLESEIA 632


>gi|121634517|ref|YP_974762.1| threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|120866223|emb|CAM09963.1| putative threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325131827|gb|EGC54527.1| threonyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 648

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 159/443 (35%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 418 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|238021043|ref|ZP_04601469.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
 gi|237868023|gb|EEP69029.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
          Length = 637

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 151/442 (34%), Gaps = 45/442 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E    G
Sbjct: 234 YITRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPRGWTLWQVIEQHMRRELTAAG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M  L     +     P +      IF   ++SY
Sbjct: 292 YQEVKTPQIMDKTFWEKSGHWANYKDNMF-LTSSEKRDYAVKPMNCPGHVQIFNHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +LP    +     R+E      G+MR R F+  DA+ F  T +             ++I
Sbjct: 351 NDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIAEETRAFNQLVMKI 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E   +   + 
Sbjct: 410 YRQFGFHDVSIKLSLRPEKRAGSDEIWDKAEQGLRDALTACGVTWQELPGEGAFYGPKVE 469

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      + LP  + A +
Sbjct: 470 Y---------------------------HIKDALGRSWQCGTI---QLDFVLPERLDAEY 499

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D      V +    +G++     ++   H G   +W   +AP ++ ++NI    +  
Sbjct: 500 VTRDNNRARPVMLHRAILGSLERFIGILIEQHAGSFPLW---LAPVQMVVMNIT---EKQ 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        +P Q++VG K + + +V ++ +
Sbjct: 554 ADYCREVVAKLQAAGFRAELDLRNEKIGYKIRDNSSQRYPYQIVVGDKEMENGQVAVRKK 613

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  + +E+ I        
Sbjct: 614 AE-DLGSLKVEDFIERLLEEMK 634


>gi|15676618|ref|NP_273762.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|22654143|sp|Q9K095|SYT_NEIMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|7225946|gb|AAF41133.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|325140125|gb|EGC62654.1| threonyl-tRNA synthetase [Neisseria meningitidis CU385]
 gi|325200596|gb|ADY96051.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 637

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLIRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  ++A +
Sbjct: 467 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLNAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|316983701|gb|EFV62682.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 648

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLIRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  ++A +
Sbjct: 478 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLNAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQLVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|307730402|ref|YP_003907626.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307584937|gb|ADN58335.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 635

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 153/442 (34%), Gaps = 39/442 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M        +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F  T E             +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIF-CTEEQFISESIAFNTLAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E   +   
Sbjct: 405 SVYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                       + D+L  + +     +++      G +Y        
Sbjct: 465 VEY--------------------HIKDALGRSWQCGTLQLDMVLPERLGAEY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +G+   + +    +G+M     ++   H G    W   +AP ++ ++NI    +   
Sbjct: 498 AEDNGRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---ENQA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R 
Sbjct: 552 EYAQSLAQSLQKQGVRVEADLRNEKISYKIRQHTLEKVPYLLVVGDKEREAQTVAVRARG 611

Query: 423 TGIREDMSLEEVINYASHRFSN 444
                 M +   I        +
Sbjct: 612 GVDLGVMPVGAFIERLRQDVQS 633


>gi|194098020|ref|YP_002001068.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|193933310|gb|ACF29134.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
          Length = 648

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|218767842|ref|YP_002342354.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|22654142|sp|Q9JVA3|SYT_NEIMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121051850|emb|CAM08156.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 637

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|240080190|ref|ZP_04724733.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 648

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------RVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|134295547|ref|YP_001119282.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166223329|sp|A4JDU4|SYT_BURVG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134138704|gb|ABO54447.1| Ser-tRNA(Thr) hydrolase [Burkholderia vietnamiensis G4]
          Length = 635

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 152/445 (34%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFIAESI-AFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLTWQELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +APF+  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPFQAIVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQTLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPVEAFVERLQEDLRSFK 635


>gi|89900130|ref|YP_522601.1| threonyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|89344867|gb|ABD69070.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodoferax
           ferrireducens T118]
          Length = 669

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 159/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  L +L+E    AE   H+ + R      I  H+ G+  W P G      V   +R+  
Sbjct: 257 QQHLTMLEE----AEKRDHRKLGRELDLFHIDDHAPGLVFWHPKGWTLWQGVEQYMRQVY 312

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y + M        +     P +      IF+  
Sbjct: 313 RDNGYQEVKGPQILDKSLWEKTGHWDKYRENMFTTESEK-REYALKPMNCPGHILIFKQG 371

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  + +     R+E      G+MR R F   D + F    +  +   +     
Sbjct: 372 IKSYRDLPLRYGEFGQCHRNEPSGGLHGIMRVRGFTQDDGHIFCTEDQILQECVD-YTAL 430

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G ++I  +  + P     S +    A+    +   +        P E   + 
Sbjct: 431 LQKVYADFGFENIIYKVATRPEQRIGSDDVWDKAEAALIESLRASGREFEISPGEGAFYG 490

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G I      +S+P  +
Sbjct: 491 PKIEYTL---------------------------KDAIGRHWQCGTI---QVDFSMPERL 520

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + G DG  H  V +    +G++     ++     G    W   +AP +++++NI   
Sbjct: 521 DAEYVGEDGARHRPVMLHRAIVGSLERFIGILIEESAGALPTW---LAPVQVAVLNITDA 577

Query: 358 D-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             + CR+  EK+   L         D   E+I  +     +   P  ++VG K  +   V
Sbjct: 578 QAEYCREIVEKLKNALPDQRLRAVADLRNEKITFKIREHSMQKLPYILVVGDKEKAAGTV 637

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       MSL+  +   S   ++ 
Sbjct: 638 AVRARGGLDLGVMSLDAFVQKISSDITHK 666


>gi|327270906|ref|XP_003220229.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Anolis carolinensis]
          Length = 472

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 152/433 (35%), Positives = 232/433 (53%), Gaps = 43/433 (9%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S +LML  G+I   S G Y ++P   +A++ +  +I +E    G  +M++PTL SA LW
Sbjct: 66  KSQRLMLLGGLICPASPGCYHYMPYAVRAMEKLIKVIDQEMQAIGGQKMNMPTLCSAKLW 125

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKF 139
            +SGR++  GKE+LR+ DR+ +    GPTHEE +TD+  S    SY+ LP   YQ+  KF
Sbjct: 126 RDSGRWELMGKELLRMKDRHGQEYCLGPTHEEAITDLIASQGCLSYKQLPLLLYQVTRKF 185

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE +PRFG++R REF MKD Y+FD + E +  +Y  +  +Y  IF+ LGL+ I ++A +
Sbjct: 186 RDEPKPRFGLLRGREFYMKDMYTFDASKEAALQTYECVSNAYSNIFNNLGLQFIKVQAAT 245

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG +SHEF + A+ GE Q+              N DF                 A  
Sbjct: 246 GSIGGTMSHEFQLPAEVGEDQLMMCA----------NCDFS----------------ANV 279

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             +++ ++   + + K + ++GIEVGH F+ GTKYS   +AT   A  K    +MG YG+
Sbjct: 280 ETMNSNEMGCPVCKGKLIESKGIEVGHTFFLGTKYSSVFNATVHTAQNKPVSAEMGCYGL 339

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYA------- 370
           G  R++AA IE       I WPD +AP+++ LI  K   +++      E++Y        
Sbjct: 340 GVSRILAASIEVLSTEDAIRWPDLIAPYQVCLIPPKKGSNEEKGAILLEELYDFISETVP 399

Query: 371 RLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGIRE 427
           RL     ++  DD     IG +   A+ LG+P  VI+G K V D     E+ ++ TG   
Sbjct: 400 RLKN---EMVLDDRTRLTIGKRLKDANKLGYPY-VIIGGKKVFDKPSLFELHNQNTGEIL 455

Query: 428 DMSLEEVINYASH 440
            ++ E +I+  S 
Sbjct: 456 FLTKEAIIDLLSK 468


>gi|261867949|ref|YP_003255871.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413281|gb|ACX82652.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 643

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 159/450 (35%), Gaps = 47/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + +L  L+E   RD       L L    + + + G+  W   G      +   +R +
Sbjct: 227 KQLEAYLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW ++G + +YG  M   +  N +     P +      IF  
Sbjct: 285 LKQYDYQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTSSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F + P+  +        
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCM-PDQVESEVTSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G ++I ++  + P     S E    A+    +              E   +
Sbjct: 403 MVYDIYSTFGFENIKVKLSTRPEKRIGSDEMWDKAEADLAKALEHNSLSYEIQEGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSL 296
              +                                    R  + G I   F+   +   
Sbjct: 463 GPKLEFALTDS---------------------------LDREWQCGTIQLDFFLPER--- 492

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            ++A++ G D +    V +    +G++     +I   + G    W   +AP ++ ++NI 
Sbjct: 493 -LNASYVGEDNERKVPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQVVVMNIT 548

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +   K
Sbjct: 549 ---DSQSEYVQKVAKQLSDAGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIEAGK 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R        ++EE ++    +  N 
Sbjct: 606 VAVRTRKGQDLGTFTVEEFLDILKKQVRNR 635


>gi|269966330|ref|ZP_06180417.1| threonyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269829069|gb|EEZ83316.1| threonyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 485

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IR +
Sbjct: 71  KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAK 128

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 129 LDEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 187

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 188 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTNCIK 246

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   S D        E   +
Sbjct: 247 MVYDTYQTFGFDNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLESMDIPYEIQEGEGAFY 306

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 307 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFNLPGR 336

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G + +    V +    +G++     ++   + G    W   +AP +  L+NI  
Sbjct: 337 LGATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVLMNITD 393

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    ++I  +L K G     D   E+IG +     L   P  ++VG + +   ++
Sbjct: 394 KQSG---YVQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEI 450

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ I Y     S+ +
Sbjct: 451 AVRTRKGKDLGKFKVDDFIAYIQDEISSRK 480


>gi|293399557|ref|ZP_06643710.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291610126|gb|EFF39248.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 648

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|254493203|ref|ZP_05106374.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268598466|ref|ZP_06132633.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|226512243|gb|EEH61588.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268582597|gb|EEZ47273.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
          Length = 637

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|240013609|ref|ZP_04720522.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240112403|ref|ZP_04726893.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240120679|ref|ZP_04733641.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
          Length = 648

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|254674303|emb|CBA10087.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 637

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  ++ G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENYAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|253998429|ref|YP_003050492.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|313200504|ref|YP_004039162.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|253985108|gb|ACT49965.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|312439820|gb|ADQ83926.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 640

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 154/445 (34%), Gaps = 49/445 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + +      +   + G+  W P G      V   +R   
Sbjct: 234 EAYLHMLEE----AEKRDHRKLGKQLDYFHMQDEAPGMVFWHPRGWNLWQEVEQYMRGLF 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  PT+    LW +SG + +Y + M   +  N +     P +      IF S 
Sbjct: 290 RQYGYQEVKTPTIMDRSLWEKSGHWQNYRENMFTTSSEN-RDYAVKPMNCPGHIQIFNSG 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP    +     R+E      G+MR R F   DA+ F  T +  K       V 
Sbjct: 349 LHSYRDLPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVKQEVADFIVM 407

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + +   G   + ++  + P     S E    A+          +      P E   + 
Sbjct: 408 LYQAYKDFGFNDVLVKLSTRPEKRVGSDETWDKAEASLAAALRENNLAFDLQPGEGAFYG 467

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G I      ++LP  +
Sbjct: 468 PKIEFTL---------------------------KDSLGRLWQCGTI---QLDFNLPERL 497

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D  + H V +    +G+M     ++  ++ G    W   +AP +  ++NI   
Sbjct: 498 GAEYVAEDNTRKHPVMLHRAIVGSMERFLGILIENYAGAMPTW---LAPVQAMVLNIT-- 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   +++ A L K G  V  D   E+I  +     L   P  ++ G + +   +V 
Sbjct: 553 -DSQSAYVQEVVAELRKNGFRVDSDLRNEKITYKIREHSLQKLPYLLVAGDREMQSGQVA 611

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           ++ R       MS+   I       
Sbjct: 612 VRTRKGEDLGSMSVSAFIERLKADV 636


>gi|148358548|ref|YP_001249755.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|296108363|ref|YP_003620064.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166223351|sp|A5IAK9|SYT_LEGPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148280321|gb|ABQ54409.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|295650265|gb|ADG26112.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 637

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 154/447 (34%), Gaps = 50/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD       L L        + G+  W P G      +   +R    
Sbjct: 228 LEEYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLV 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +
Sbjct: 286 DFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G+MR R  +  DA+ F  T +  +     M    
Sbjct: 345 KSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIF-CTEDQIQSEVAMMLELV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I  R    P     S +    A+T        ++      P E   +  
Sbjct: 404 QSVYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP- 297
            I  +                                     +G I+  GT    +S+P 
Sbjct: 464 KIECSLSDC---------------------------------LGRIWQCGTIQVDFSMPA 490

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A++   DG K   V +    +G+      ++   + GK  +W   ++P +  ++ I 
Sbjct: 491 RLEASYVAEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAVVLTI- 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +
Sbjct: 547 --SEKQNEYAEKVRKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQ 604

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R       M+++ + +  +   
Sbjct: 605 VAVRTRDGIDLGVMTIDTICDTLTQEI 631


>gi|90407011|ref|ZP_01215201.1| threonyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90311882|gb|EAS39977.1| threonyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 635

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 155/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    +   + G+  W   G      +   IRE+
Sbjct: 226 KQLKAYLKRLEEAAKRDHRKIGKQLDLY--HMQDEAPGMVFWHANGWTIYRELEKYIREQ 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW +SG +  Y   M      N +     P +      IF  
Sbjct: 284 TEEYGYQEVKAPQILDRSLWEKSGHWAKYKDNMFCTCSEN-RDYAIKPMNCPGHVQIFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T        +    
Sbjct: 343 GLKSYRDLPLRMSEFGSCHRNEPSGSLHGLMRVRAFTQDDAHIF-CTEAQILDEVSSCIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G ++I ++  + P            A+          D     +P E   +
Sbjct: 402 MVFECYKTFGFENIDVKLSTRPEQRVGDDATWDKAEAALADALTKNDVEFSWLPGEGAFY 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G I      +S+P  
Sbjct: 462 GPKIEFTL---------------------------HDCLGRAWQCGTI---QLDFSMPGR 491

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + ATF G D + H  V +    +G++     ++   + G   I+P  ++P ++ ++NI  
Sbjct: 492 LDATFVGEDNERHTPVMIHRAILGSLERWIGILTEEYAG---IFPTWLSPQQVVVMNITD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +   ++  +L K G  V  D   E+IG +     L   P  ++VG K V   ++
Sbjct: 549 KQS---EYVAEVVTKLKKSGIRVISDLRNEKIGFKIREHTLKRVPYLLVVGDKEVEAREL 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            I+ R         +++ I Y        R
Sbjct: 606 SIRTRKGDDLGKFKIDDFITYIKEEIVTRR 635


>gi|268596339|ref|ZP_06130506.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268550127|gb|EEZ45146.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 638

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 232 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 290 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 349 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 408 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 468 Y---------------------------RVKDALGRSWQCGT---LQLDFVLPERLDAEY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 498 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 552 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 611 KAEDLGSLDLDDFIAQLQQEITD 633


>gi|53719558|ref|YP_108544.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|53725296|ref|YP_102787.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76810857|ref|YP_333290.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121600801|ref|YP_992866.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124385818|ref|YP_001026205.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126441516|ref|YP_001058752.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|126449349|ref|YP_001080524.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126453502|ref|YP_001066005.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134282197|ref|ZP_01768902.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|167003090|ref|ZP_02268880.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167719848|ref|ZP_02403084.1| threonyl-tRNA synthetase [Burkholderia pseudomallei DM98]
 gi|167738851|ref|ZP_02411625.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816071|ref|ZP_02447751.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167824445|ref|ZP_02455916.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167845979|ref|ZP_02471487.1| threonyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167894556|ref|ZP_02481958.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167902959|ref|ZP_02490164.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167911196|ref|ZP_02498287.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167919220|ref|ZP_02506311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217423341|ref|ZP_03454842.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|226199711|ref|ZP_03795264.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237812016|ref|YP_002896467.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238562605|ref|ZP_04610138.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242317788|ref|ZP_04816804.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254177492|ref|ZP_04884147.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254180004|ref|ZP_04886603.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254188582|ref|ZP_04895093.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197889|ref|ZP_04904311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254199739|ref|ZP_04906105.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254206061|ref|ZP_04912413.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|254259413|ref|ZP_04950467.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297839|ref|ZP_04965292.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358432|ref|ZP_04974705.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|73919776|sp|Q62KI2|SYT_BURMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919777|sp|Q63TM2|SYT_BURPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771913|sp|Q3JT13|SYT_BURP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223324|sp|A3MJT8|SYT_BURM7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223325|sp|A2S2N6|SYT_BURM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223326|sp|A1V3R3|SYT_BURMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223327|sp|A3NUI4|SYT_BURP0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223328|sp|A3N8T1|SYT_BURP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52209972|emb|CAH35944.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|52428719|gb|AAU49312.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76580310|gb|ABA49785.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121229611|gb|ABM52129.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124293838|gb|ABN03107.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126221009|gb|ABN84515.1| threonine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|126227144|gb|ABN90684.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242219|gb|ABO05312.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134246235|gb|EBA46324.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|147749335|gb|EDK56409.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753504|gb|EDK60569.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|148027559|gb|EDK85580.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157806992|gb|EDO84162.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936261|gb|EDO91931.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698531|gb|EDP88501.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169654630|gb|EDS87323.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184210544|gb|EDU07587.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217393199|gb|EEC33220.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|225928297|gb|EEH24331.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237505158|gb|ACQ97476.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238522290|gb|EEP85735.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242141027|gb|EES27429.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243061341|gb|EES43527.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254218102|gb|EET07486.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 635

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 150/442 (33%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T +             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEDQINSEAIAFNKLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMMLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G+M     ++   H G   +W   +AP    ++NI    +   + 
Sbjct: 500 DNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPAHAVVLNIA---ESQAEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 ARTVAQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +          +
Sbjct: 614 DLGVMPVEAFVERLREDIQAFK 635


>gi|221214904|ref|ZP_03587872.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221165131|gb|EED97609.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
          Length = 635

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 151/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQFIAESIAFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +AP +  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPVQAVVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 VEYAQSLAQTLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPVEAFVERLQEDLRSFK 635


>gi|161869662|ref|YP_001598829.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|189083614|sp|A9M375|SYT_NEIM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161595215|gb|ABX72875.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 637

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|224584156|ref|YP_002637954.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254783535|sp|C0Q647|SYT_SALPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|224468683|gb|ACN46513.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 642

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSPFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNITDSQSG- 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 554 --YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 612 RGKDLGSLDVNDVIEKLQQEIRSR 635


>gi|311693962|gb|ADP96835.1| threonyl-tRNA synthetase [marine bacterium HP15]
          Length = 641

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 152/443 (34%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      KL L    + + + G+  W P G      +   +R +Q  
Sbjct: 229 KAYLHRLEEAEKRDHRKVGKKLGLF--HMQEEAPGMVFWHPDGWSLYQEIEQYMRRKQQE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S +LW +SG +D +  +M              P +      +F   +K
Sbjct: 287 HGYKEIKTPQVVSRNLWEKSGHWDKFKDDMFTTESEK-HDYAIKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F    +  +   +       
Sbjct: 346 SYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIF-CEEDAIQQEVSSFIEMLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   I  +  + P     S E    A+    +    +      +P E       
Sbjct: 405 EIYTDFGFTEILYKLSTRPEKRVGSDEVWDKAEAALEEALNREGVDWELLPGEG------ 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A         L D +    +     ++       G +Y        
Sbjct: 459 --------------AFYGPKIEFSLKDCIGRVWQCGTIQVDFSMPGRLGAQY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +    +G+      ++   ++G    W   +AP +++++NI  +    R
Sbjct: 498 ADNSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPTW---LAPTQVAILNITDN---QR 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D C+ +  +   +G  V  D   E+IG +     L   P  V+VG K V ++ V ++ R 
Sbjct: 552 DYCQNLAKKWDSLGYRVNADLRNEKIGFKIREHTLNKVPYLVVVGDKEVENNAVAVRTRK 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 +SLE             
Sbjct: 612 GEDLGTLSLEAFEQLLQKDVERK 634


>gi|268683833|ref|ZP_06150695.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|268624117|gb|EEZ56517.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 637

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|325133766|gb|EGC56422.1| threonyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325144077|gb|EGC66385.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325206438|gb|ADZ01891.1| threonyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 637

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  ++A +
Sbjct: 467 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLNAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|206559848|ref|YP_002230612.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|238693072|sp|B4E7I6|SYT_BURCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198035889|emb|CAR51780.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 635

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 151/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFDHIDIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLTWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +AP++  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPYQAIVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQSLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPVEAFVERLQEDLRSFK 635


>gi|319943475|ref|ZP_08017757.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319743290|gb|EFV95695.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 636

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 159/444 (35%), Gaps = 45/444 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +   + H    + G+  W P G      +   IRE+  +
Sbjct: 231 YLHMLEE----AEKRDHRKLGKDLDLFHTQAEAPGMVFWHPRGWTIWQRIEQYIREKYQK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +   DLW  SG +D+Y + M   ++   +     P +      +F + ++
Sbjct: 287 NGYQEVRCPQILDVDLWKRSGHWDNYKENMF-FSESEKREYAVKPMNCPGHVQLFNASLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F  T E  +          +
Sbjct: 346 SYRDLPLRYAEFGSCHRNEPSGALHGIMRVRGFTQDDGHIF-CTEEQVEAEVTAFHQQAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     + E    A+        + D     +P E   +   
Sbjct: 405 AVYRDFGFTDVSVKLALRPTQRLGTDEAWDRAENALRAALSACDVAWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               K    R  +VG I Y        + A +
Sbjct: 465 IEY---------------------------HLKDSIGRAWQVGTIQYDPM-MPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   + +    +G+M     ++   H G    W   +AP +++++ +       
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFIGMLIEHHAGAMPTW---LAPVQVAVLTVT---DTA 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E I  RL K G  V  D  G++IG +     L   P  V+VG K      + ++ R
Sbjct: 551 ADYAEDIRQRLIKQGFRVISDLRGDKIGYKIREHSLQKIPYLVVVGEKDRQAGTLAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS E   +  + + +  
Sbjct: 611 GGKDLGSMSFEGFASLLAQQVAEK 634


>gi|239998484|ref|ZP_04718408.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240125235|ref|ZP_04738121.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|317163762|gb|ADV07303.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 648

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|238797380|ref|ZP_04640880.1| Threonyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238718811|gb|EEQ10627.1| Threonyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 642

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A++                P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEQWTRAESDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSIERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLAEIRSR 635


>gi|221197733|ref|ZP_03570779.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204709|ref|ZP_03577726.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221175566|gb|EEE07996.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221181665|gb|EEE14066.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 635

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 151/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQFIAESIAFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +AP +  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPVQAVVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 VEYAQSLAQTLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPIEAFVERLQEDLRSFK 635


>gi|91078076|ref|XP_971952.1| PREDICTED: similar to prolyl-tRNA synthetase [Tribolium castaneum]
          Length = 448

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 154/459 (33%), Positives = 241/459 (52%), Gaps = 52/459 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASH-------KLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R S+ F P+    P++AE+  H       +LML  G+I Q S G + +LPLG K+L+ + 
Sbjct: 8   RLSRLFQPVS-VVPKNAEVKRHDITSKSQRLMLELGIIRQASPGCFHFLPLGVKSLEKLT 66

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++ EE  + G  ++  PTL +A LW ++GR ++   E+ ++ DR+D++ I  PTHEE  
Sbjct: 67  RLVDEEMKKIGGQKIIFPTLTNAKLWEKTGRLETVSSELFQIKDRHDQSYILSPTHEEAA 126

Query: 115 TDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +++  S    SY++LP   YQI  K+RDE++PRFG+MR ++FLMKD YSFD   E +KH+
Sbjct: 127 SNLLASLAPISYKHLPLKLYQITSKYRDEMKPRFGLMRGKQFLMKDMYSFDTDLETAKHT 186

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+++  SY RIF R+G+  + +   SG +GG+LSHE+   AD GE ++            
Sbjct: 187 YDEICKSYDRIFRRIGIDFVKVVGCSGHMGGELSHEYHYKADVGEDKILTCN-------- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                 Y+A ++V  E+   +          GIEVGH F  G K
Sbjct: 239 -------------------KCNYSANTEVSGEEKCPNCGNTSVKIHLGIEVGHTFLLGEK 279

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P++ATF    GK   +QMGSYG+G  R++AAVIE     + I WP  ++P+ + ++ 
Sbjct: 280 YSKPLNATFLNNHGKPDVLQMGSYGLGLSRILAAVIEVMSSEQEIRWPQILSPYSVIILP 339

Query: 354 IKAHDQV---CRD--ACEKIYAR------LSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            K+  +     +D    + +Y +      L      V  DD     IG +F  A   G+P
Sbjct: 340 PKSGSKEETHIKDSGLVDSLYEKIETTCNLQDN---VLIDDRTNFTIGRRFLEAKKNGYP 396

Query: 402 LQVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYAS 439
             V +G K V +  + EI +  T     +S  +++NY  
Sbjct: 397 FIVTLGKKIVENPLLYEITNLKTNETLFLSENDLMNYLR 435


>gi|237801015|ref|ZP_04589476.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023872|gb|EGI03929.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 640

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YILRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      N +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESEN-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  ++A +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLNAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|171058428|ref|YP_001790777.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|238689097|sp|B1XYZ3|SYT_LEPCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170775873|gb|ACB34012.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 637

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 152/446 (34%), Gaps = 49/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I +H+ G+  W P G      V   +R   
Sbjct: 233 QKYLVMLEE----AEKRDHRKLGRELDLFHIDEHAPGVVFWHPKGWTVWQQVEQYMRRVY 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y   M        +     P +      IF+  
Sbjct: 289 RDNGYQEVKGPQILDKGLWEKTGHWDKYRDNMFTTESEK-RDYALKPMNCPGHILIFKQG 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  + +     R+E      G+MR R F   D + F  T +      +     
Sbjct: 348 IKSYRDLPLRYGEFGQCHRNEPSGGLHGIMRVRGFTQDDGHIF-CTEDQILPECDAFTTL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     S E    A+        +        P E   + 
Sbjct: 407 LQKVYADFGFTEILYKVATRPEKRIGSDELWDKAEAALIASLRNSGCEFEISPGEGAFYG 466

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      +SLP  +
Sbjct: 467 PKVEYTL---------------------------KDALGRHWQCGTI---QVDFSLPERL 496

Query: 299 SATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +    G+  H V +    +G++     ++   H G    W   +AP ++S++NI   
Sbjct: 497 DAEYVAESGERLHPVMLHRAILGSLERFIGILIEEHAGALPFW---LAPTQVSVLNITDG 553

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    +   L K G  V  D   E+I  +     L   P  ++VG K  +   V 
Sbjct: 554 ---QADYARDVARSLQKQGLRVALDLRNEKITYKIREHSLQKVPYLIVVGDKERASGAVA 610

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R       M+LE      +   +
Sbjct: 611 VRARGNQDLGVMALEAFSQKLAAELA 636


>gi|308388909|gb|ADO31229.1| putative threonyl-tRNA synthetase [Neisseria meningitidis alpha710]
 gi|325202484|gb|ADY97938.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325207764|gb|ADZ03216.1| threonyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 637

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  ++A +
Sbjct: 467 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLNAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|240016048|ref|ZP_04722588.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
          Length = 648

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  ++ G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFVGILIENYAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|317047868|ref|YP_004115516.1| threonyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316949485|gb|ADU68960.1| threonyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 642

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVRDEVNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E    A+    +            P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGTDEMWDRAEVDLAEALKENQIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  + AT+
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPKRLDATY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++     G    W   +AP +  ++NI       
Sbjct: 498 VGENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPSW---LAPVQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVSELTKKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M ++  +        + 
Sbjct: 612 RGKDLGSMDVDVFVEKLQQEIRSR 635


>gi|260441039|ref|ZP_05794855.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|268600819|ref|ZP_06134986.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268584950|gb|EEZ49626.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
          Length = 637

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|194289383|ref|YP_002005290.1| threonyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|238692758|sp|B3R4J1|SYT_CUPTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193223218|emb|CAQ69223.1| threonine tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 635

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 152/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + +T     + + + G+  W P G +    V   +R   
Sbjct: 229 EAYLHMLEE----AEKRDHRKLGKTLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW +SG + +Y + M  + +   +     P +      IF   
Sbjct: 285 TDAGYDEVRTPQVMDRSLWEKSGHWQNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    +     R+E      G+MR R F+  DA+ F  T E            
Sbjct: 344 LRSYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEEQIVAEAKAFNEL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K + ++    P     S E    A+ G      +       +P E   + 
Sbjct: 403 AFSVYDDFGFKDVKVKLSLRPDQRAGSDEIWDHAEEGLRLALRACGVEWEELPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                               K    R  + G +          + A
Sbjct: 463 PKVEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   V +    +G+      ++  +H G    W   +AP ++ ++NI     
Sbjct: 495 EYVSEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAW---LAPDQVVVMNIA---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E +   L K G     D   E+I  +     L   P  ++VG K    ++V ++
Sbjct: 549 SQAEYAESVVQLLQKQGFRAKADLRNEKITYKIREHSLQKVPYLLVVGDKERDANQVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M +   +    H  ++ 
Sbjct: 609 ARGNVDLGVMPVSAFVERLQHDVASK 634


>gi|170732802|ref|YP_001764749.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|238688618|sp|B1K091|SYT_BURCC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169816044|gb|ACA90627.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 635

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 151/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFDHIDIKLSLRPDQRAGTDETWARAEQGLRDALTACGLTWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +AP++  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPYQAIVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLTQTLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPVEAFVERLQEDLRSFK 635


>gi|120554978|ref|YP_959329.1| threonyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|166223352|sp|A1U2C3|SYT_MARAV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120324827|gb|ABM19142.1| Ser-tRNA(Thr) hydrolase [Marinobacter aquaeolei VT8]
          Length = 641

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 154/443 (34%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      KL L    + + + G+  W P G      V   +R +Q++
Sbjct: 229 KAYLHRLEEAEKRDHRKIGKKLGLF--HMQEEAPGMVFWHPDGWSLYQEVEQYMRAQQHK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S  LW +SG +D +  +M              P +      +F   +K
Sbjct: 287 HGYKEIKTPQVVSRTLWEKSGHWDKFKDDMFTTESEK-HDYAIKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F    +  +   +       
Sbjct: 346 SYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIF-CEEDAIQEEVSAFIAMLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   I  +  + P     S E    ++    Q    +      +P E       
Sbjct: 405 EIYADFGFSEILYKLSTRPEKRVGSDEVWDKSEAALEQALNREGVDWELLPGEG------ 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A         L D L    +     ++       G +Y        
Sbjct: 459 --------------AFYGPKIEFSLKDCLGRVWQCGTIQVDFSMPGRLGAQY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +    +G+      ++   ++G    W   +AP +++++NI       R
Sbjct: 498 ADNSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPTW---LAPTQVAVLNITDK---QR 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D C+ +  +L   G  V  D   E+IG +     L   P  V+VG K + ++ V ++ R 
Sbjct: 552 DYCQNLAKKLDSSGYRVNADLRNEKIGFKIREHTLNKVPYLVVVGDKEIENNAVAVRTRK 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS+++     +      
Sbjct: 612 GEDLGTMSVDDFEKLLAADVERK 634


>gi|240115143|ref|ZP_04729205.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|291044371|ref|ZP_06570080.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291011265|gb|EFE03261.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 648

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|261392911|emb|CAX50492.1| threonyl-tRNA synthetase (threonine--tRNA ligase; ThrRS) [Neisseria
           meningitidis 8013]
 gi|325203807|gb|ADY99260.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 637

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  ++ G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENYAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|327393701|dbj|BAK11123.1| Threonyl-tRNA synthetase ThrS [Pantoea ananatis AJ13355]
          Length = 642

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 146/444 (32%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQLRTEVNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEEDLAAALNENNIEFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  + AT+
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPKRLDATY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++     G    W   +AP +  ++NI       
Sbjct: 498 VGENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPSW---LAPMQAVVMNITDG---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVETLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M ++  +        + 
Sbjct: 612 RGKDLGSMDVDVFVEKLQQEIRSR 635


>gi|268594343|ref|ZP_06128510.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547732|gb|EEZ43150.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 638

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 232 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 290 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 349 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 408 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 468 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 498 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 552 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 611 KAEDLGSLDLDDFIAQLQQEITD 633


>gi|239993779|ref|ZP_04714303.1| threonyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 638

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 157/451 (34%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   + H    + G+  W   G      + + +R
Sbjct: 227 KQLKSYLQRLEE----AEKRDHRKIGKALNLFHWQEEAPGMVFWHNDGWSIYTELESYVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P +    LW +SG +D Y + M        +     P +      IF
Sbjct: 283 KKLREYGYDEVKGPLMMDRSLWEKSGHWDKYAENMFTTESEK-REYAVKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQILEEVSGC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G ++I ++  + P     + E    ++        + D      P E  
Sbjct: 401 IKMVYETYAAFGFENIKVKLSTRPEKRVGADEIWDKSEAALADALKANDIEFDYQPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      +S+P
Sbjct: 461 FYGPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSMP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + +T+   DG+    V +    +G++     ++     G   +W   +AP ++ ++NI
Sbjct: 491 GRLGSTYVAEDGERKVPVMIHRAILGSLERFIGILTEEFAGFFPLW---LAPQQVVVMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +       +L ++G     D   E+IG +     L   P  ++VG K +   
Sbjct: 548 TDK---QAEYASDCVKKLQELGFRAKSDLRNEKIGFKIREHTLKRIPYMLVVGDKEMEAG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +V ++ R       M LE+ I  A       
Sbjct: 605 EVAVRSRRGDDLGKMRLEDFIAMAQQEVVEK 635


>gi|54298706|ref|YP_125075.1| threonyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|73919801|sp|Q5X1H3|SYT_LEGPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53752491|emb|CAH13923.1| Threonyl tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 637

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 154/447 (34%), Gaps = 50/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD       L L        + G+  W P G      +   +R    
Sbjct: 228 LEEYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLV 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +
Sbjct: 286 DFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G+MR R  +  DA+ F  T +  +     M    
Sbjct: 345 KSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIF-CTEDQIQSEVAMMLELV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I  R    P     S +    A+T        ++      P E   +  
Sbjct: 404 QSVYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMLGRNIEWVDAPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP- 297
            I  +                                     +G I+  GT    +S+P 
Sbjct: 464 KIECSLSDC---------------------------------LGRIWQCGTIQVDFSMPA 490

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A++   DG K   V +    +G+      ++   + GK  +W   ++P +  ++ I 
Sbjct: 491 RLEASYVAEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAVVLTI- 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +
Sbjct: 547 --SEKQNEYAEKVRKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQ 604

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R       M+++ + +  +   
Sbjct: 605 VAVRTRDGIDLGVMTIDTICDTLTQEI 631


>gi|22125796|ref|NP_669219.1| threonyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45442011|ref|NP_993550.1| threonyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596666|ref|YP_070857.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108807773|ref|YP_651689.1| threonyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108812050|ref|YP_647817.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145598020|ref|YP_001162096.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149365658|ref|ZP_01887693.1| threonyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|153950233|ref|YP_001400689.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162420291|ref|YP_001607032.1| threonyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165927513|ref|ZP_02223345.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939479|ref|ZP_02228025.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011794|ref|ZP_02232692.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210452|ref|ZP_02236487.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400748|ref|ZP_02306254.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424849|ref|ZP_02316602.1| threonyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024059|ref|YP_001720564.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186895722|ref|YP_001872834.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|218929522|ref|YP_002347397.1| threonyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229837960|ref|ZP_04458119.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895121|ref|ZP_04510297.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229898521|ref|ZP_04513666.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902362|ref|ZP_04517482.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270490458|ref|ZP_06207532.1| threonine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503566|ref|YP_003567628.1| threonyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|22654122|sp|Q8ZDW5|SYT_YERPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919846|sp|Q669Z0|SYT_YERPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122979581|sp|Q1C728|SYT_YERPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122980145|sp|Q1CIG3|SYT_YERPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225518|sp|A4TIL1|SYT_YERPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987327|sp|A7FHG1|SYT_YERP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238687259|sp|A9R0A8|SYT_YERPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688418|sp|B1JJ17|SYT_YERPY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691408|sp|B2K668|SYT_YERPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21958722|gb|AAM85470.1|AE013793_6 threonine tRNA synthetase [Yersinia pestis KIM 10]
 gi|45436874|gb|AAS62427.1| threonyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589948|emb|CAH21580.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108775698|gb|ABG18217.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Yersinia pestis
           Nepal516]
 gi|108779686|gb|ABG13744.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Yersinia pestis
           Antiqua]
 gi|115348133|emb|CAL21061.1| threonyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145209716|gb|ABP39123.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149292071|gb|EDM42145.1| threonyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|152961728|gb|ABS49189.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162353106|gb|ABX87054.1| threonyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165912528|gb|EDR31159.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920568|gb|EDR37845.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989259|gb|EDR41560.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207632|gb|EDR52112.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167049601|gb|EDR61009.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056036|gb|EDR65814.1| threonyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750593|gb|ACA68111.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186698748|gb|ACC89377.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|229680697|gb|EEO76793.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229688069|gb|EEO80140.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694326|gb|EEO84373.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701883|gb|EEO89906.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361608|gb|ACY58329.1| threonyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365651|gb|ACY62208.1| threonyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270338962|gb|EFA49739.1| threonine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294354025|gb|ADE64366.1| threonyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320015090|gb|ADV98661.1| threonyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 642

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDELWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLAEIRSR 635


>gi|304317243|ref|YP_003852388.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778745|gb|ADL69304.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 634

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 156/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLNMLEEAKKRDHRKLGKELDLFS--IHNEGPGFPFFHPKGMVIRNILEDFWRKEHAKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + + +LW  SG +D Y + M      + +     P +      ++ S + SY
Sbjct: 288 YLEIKTPIILNEELWHRSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGALLVYNSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TP+  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGALHGLMRVRSFTQDDAHLF-MTPDQVESEILGVIKLIDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     +   + P     S E   LA     +              +   +   I 
Sbjct: 406 YKIFGFDYF-VELSTRPENSIGSDEDWELATNALIKAMEHIGLDYKVNEGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +     +  + G
Sbjct: 465 F---------------------------HLKDSIGRTWQCGTI-QLDFQMPERFNCEYVG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++    A++  +  G    W   +AP ++ ++ I         
Sbjct: 497 QDGEKHRPVMLHRVVFGSIERFIAILTENFAGAFPTW---LAPVQVRILPI---SDKHLA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  RL +    V  DD  E+IG +   A +   P  +I+G K V    V ++ R  
Sbjct: 551 YAQNIQQRLLENDIRVELDDRNEKIGYKIREAQMQKIPYMLILGDKEVESGNVSVRSRKD 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     S++E ++       N 
Sbjct: 611 GDIGSKSMQEFLSSILEEIKNK 632


>gi|307611592|emb|CBX01274.1| threonyl tRNA synthetase [Legionella pneumophila 130b]
          Length = 637

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 154/447 (34%), Gaps = 50/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD       L L        + G+  W P G      +   +R    
Sbjct: 228 LEEYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLV 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +
Sbjct: 286 DFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G+MR R  +  DA+ F  T +  +     M    
Sbjct: 345 KSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIF-CTEDQIQSEVAMMLELV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I  R    P     S +    A+T        ++      P E   +  
Sbjct: 404 QSVYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP- 297
            I  +                                     +G I+  GT    +S+P 
Sbjct: 464 KIECSLSDC---------------------------------LGRIWQCGTIQVDFSMPA 490

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A++   DG K   V +    +G+      ++   + GK  +W   ++P +  ++ I 
Sbjct: 491 RLEASYVAEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAVVLTI- 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +
Sbjct: 547 --SEKQNEYAEKVRKTLQKRGVRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQ 604

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R       M+++ + +  +   
Sbjct: 605 VAVRTRDGIDLGVMTIDTICDTLTQEI 631


>gi|268603124|ref|ZP_06137291.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268587255|gb|EEZ51931.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 637

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|89073900|ref|ZP_01160406.1| threonyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89050228|gb|EAR55732.1| threonyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 631

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 159/444 (35%), Gaps = 45/444 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G      +   IRE+
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LNEYDYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEAQVQQEVTSCIE 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S     + D  E+ +  + + M+ P        
Sbjct: 404 MVYDTYKTFGFDNIVVKLSTRPEKRVGSD---AMWDKAESDLITALESMEIPFE------ 454

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                   I E   A Y    +       D          R  + G +      ++LP  
Sbjct: 455 --------IQEGEGAFYGPKIEFTLHDCLD----------RAWQCGTV---QLDFALPER 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G D + H  V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 494 LGATYVGEDNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTW---LAPQQAVVMNIT- 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++I  +L K G  V  D   E+IG +     L   P  ++ G K V    V
Sbjct: 550 --DAQSEYVQEIVEKLKKCGIRVNADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGVV 607

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            ++ R         ++E++ +   
Sbjct: 608 AVRTRKGKDLGKFKIDELVAFMQE 631


>gi|240117427|ref|ZP_04731489.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 648

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|123442189|ref|YP_001006170.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225517|sp|A1JMJ9|SYT_YERE8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122089150|emb|CAL11992.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 642

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLAEIRSR 635


>gi|289163681|ref|YP_003453819.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
 gi|288856854|emb|CBJ10665.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
          Length = 639

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 156/451 (34%), Gaps = 50/451 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L        + G+  W P G      +   +R      G
Sbjct: 231 YLFRLEEAEKRDHRKLGKSLELF--HFQDIAPGMVFWHPKGWTIYQELERYMRHRLADFG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG + ++  EM  + +  ++     P +      +F   +KSY
Sbjct: 289 YQEIRTPQLVDRVLWEKSGHWANFRDEMF-VTETENRHYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R E      G+MR R  +  DA+ F  T +  +     M      +
Sbjct: 348 RDLPLRFSEFGNCHRCEPSGSLHGLMRVRNMVQDDAHIF-CTEDQIQSEVAMMLELVQSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  R    P     S E    A+    Q    ++      P E   +   I 
Sbjct: 407 YTDFGFNEIKYRLALRPEKRVGSDEVWDKAEAALKQAMKERNIEWVDAPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MS 299
            +                                     +G I+  GT    +S+P  + 
Sbjct: 467 CSLSDC---------------------------------LGRIWQCGTIQVDFSMPGRLD 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG K   V +    +G+      ++   + GK  +W   ++P +  ++ I    
Sbjct: 494 AIYIAEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAIIMTI---S 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +  EK+   L K G    +D   E+IG +     L   P  +++G K V   +V +
Sbjct: 548 EKQSEYAEKVTQILQKNGIRANFDLRNEKIGFKIREHTLQKIPYLLVIGDKEVESGQVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + R       M+++ + +      ++   ++
Sbjct: 608 RTREGTDLGVMTIDTICDTLMQEIAHKGSIV 638


>gi|323526736|ref|YP_004228889.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383738|gb|ADX55829.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 635

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 149/443 (33%), Gaps = 45/443 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F   ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  ++ ++    P     + E    A+ G  +   +       +P E   +   + 
Sbjct: 407 YKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVSWEELPGEGAFYGPKVE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   + +    +G+M     ++   H G    W   +AP ++ ++NI    +  
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQTLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  M ++  I        +
Sbjct: 611 GGVDLGVMPVDAFIERLRQDVQS 633


>gi|238749482|ref|ZP_04610987.1| Threonyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238712137|gb|EEQ04350.1| Threonyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 642

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLAEIRSR 635


>gi|325136057|gb|EGC58667.1| threonyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 643

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 413 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  ++A +
Sbjct: 473 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLNAEY 502

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 503 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 557 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 615

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 616 KAEDLGSLDLDDFIAQLQQEITD 638


>gi|304387978|ref|ZP_07370150.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304337977|gb|EFM04115.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 643

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 161/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 413 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  + A +
Sbjct: 473 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLDAEY 502

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  ++ G   +W   +AP ++ ++NI    +  
Sbjct: 503 VTENNDRARPVMLHRAILGSLERFIGILIENYAGSFPLW---LAPVQLVIMNIT---ENQ 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 557 ADYCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 615

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 616 KAEDLGSLDLDDFIAQLQQEITD 638


>gi|167836852|ref|ZP_02463735.1| threonyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 635

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 151/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HLQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T +             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEDQINSEAIAFNKLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 407 YADFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 467 Y--------------------HIKDALGRSWQCGTLQLDMMLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G+M     ++   H G   +W   +AP    ++NI    +   + 
Sbjct: 500 DNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPAHAVVLNIA---ESQAEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AQTVAQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +          +
Sbjct: 614 DLGVMPVEAFVERLREDIQAFK 635


>gi|172087694|ref|YP_204597.2| threonyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197335357|ref|YP_002156016.1| threonyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|171902287|gb|AAW85709.2| threonyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197316847|gb|ACH66294.1| threonyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 642

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 150/443 (33%), Gaps = 44/443 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD      +L L    + Q + G+  W   G      +   +RE+  +   
Sbjct: 233 LIRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFVREKLTQYDY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYAEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 350 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVF-CTEAQVQQEVKSCIEMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E    A++       S +        E   +   I  
Sbjct: 409 QTFGFDNIVVKLSTRPEQRVGSDEMWDRAESDLKLALESMEIPYEIQEGEGAFYGPKIEF 468

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 469 TL---------------------------HDCLDRAWQCGTV---QLDFALPERLGATYV 498

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H  V +    +G++     ++   + G    W   +AP +  ++ I        
Sbjct: 499 GEDNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTW---LAPEQAIVMGITDK---QA 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 553 DYVQEIAKKLQKNGFRVKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 612

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                   +++ + +     S  
Sbjct: 613 GKDLGKFKIDDFVAFLQQEVSAR 635


>gi|332161611|ref|YP_004298188.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665841|gb|ADZ42485.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 642

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLAEIRSR 635


>gi|291617247|ref|YP_003519989.1| ThrS [Pantoea ananatis LMG 20103]
 gi|291152277|gb|ADD76861.1| ThrS [Pantoea ananatis LMG 20103]
          Length = 642

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 146/444 (32%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQLRTEVNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +      P E   +   I 
Sbjct: 408 YSTFGFEKILVKLSTRPEKRIGSDETWDRAEEDLAAALNENNIEFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  + AT+
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPKRLDATY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++     G    W   +AP +  ++NI       
Sbjct: 498 VGENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPSW---LAPMQAVVMNITDG---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVETLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M ++  +        + 
Sbjct: 612 RGKDLGSMDVDVFVEKLQQEIRSR 635


>gi|262044121|ref|ZP_06017196.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038520|gb|EEW39716.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 622

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVRDEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDETWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA +
Sbjct: 448 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPQRLSAFY 477

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++     G    W   +AP ++ ++NI       
Sbjct: 478 VGENNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTW---IAPVQVVVMNIT---DSQ 531

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 532 AEYVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 591

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M   EVI        + 
Sbjct: 592 RGKDLGSMDENEVIEKLQQEIRSR 615


>gi|238765296|ref|ZP_04626223.1| Threonyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238696469|gb|EEP89259.1| Threonyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 642

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLAEIRSR 635


>gi|332968643|gb|EGK07696.1| threonine--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 644

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + S G+  W P G      +   +R+ Q   G
Sbjct: 231 YITRMEEAEKRDHRKIGRQLNLF--HMQEQSPGMVFWHPNGWTIYQVLEQYMRKVQKDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG + +Y   M   +  + +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDRSLWEKSGHWGNYATNMFTTSSES-RDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T    +          L +
Sbjct: 348 RELPIRLAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTQAQIQEEVANFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     + E   +A+    +   S       +P E   +   I 
Sbjct: 407 YKDFGFDQIDMKLSTRPEKRVGTDESWDIAEKALAEALDSSGLEWEYLPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +                            K    R  + G I          + A F  
Sbjct: 467 FSL---------------------------KDSLGRVWQCGTI-QVDPNMPERLDAEFVN 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    + +    +G+      ++   + G   +W   +AP ++ ++NI        +
Sbjct: 499 ENNERETPIMLHRAILGSFERFLGMLIEHYAGWMPVW---LAPQQVVVMNITDKQS---E 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           AC+ + A L   G     D   E+IG +     L   P  +++G K V   +V ++ R  
Sbjct: 553 ACQNVVAELQNAGLRAISDLRNEKIGFKIRERTLERIPYMLVLGDKEVESGQVNVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+ + I          
Sbjct: 613 ENLGVMSVADFIELVQKAVDQK 634


>gi|148653933|ref|YP_001281026.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048584|sp|A5WHD5|SYT_PSYWF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148573017|gb|ABQ95076.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 644

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 153/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++  ++E    AE   H+ + +      + + S G+  W P G      +   +R+ Q
Sbjct: 229 QAYIQRIEE----AEKRDHRKIGKALNLFHMQEQSPGMVFWHPNGWTIYQVLEQYMRKVQ 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW +SG + +Y   M   +  + +     P +      +F   
Sbjct: 285 KDNGYQEIKTPQIVDRSLWEKSGHWGNYATNMFTTSSES-RDYAVKPMNCPCHVQVFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR LP    +     R+E      G+MR R F   DA+ F  T    +         
Sbjct: 344 LKSYRELPIRLAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTQAQIQEEVANFIKL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L ++   G   I M+  + P     + E   +A+        S       +P E   + 
Sbjct: 403 TLDVYKDFGFDQIEMKLSTRPEKRVGTDESWDIAEKALADALDSSGLEWEYLPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I  +                            K    R  + G I          + A
Sbjct: 463 PKIEFSL---------------------------KDSLGRVWQCGTI-QVDPNMPERLEA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F   + +    + +    +G+      ++   + G   +W   +AP ++ ++NI     
Sbjct: 495 EFVNENNERETPIMLHRAILGSFERFLGMLIEHYAGWMPVW---LAPQQVVVMNITDK-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              DAC+ + + L   G     D   E+IG +     L   P  +++G K V   +V ++
Sbjct: 550 -QADACQNVASELQNAGLRAITDLRNEKIGFKIRERTLERIPYMLVLGDKEVESGQVNVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       MS+ + I       +  
Sbjct: 609 TREGENLGVMSVADFIELVQKAVAQK 634


>gi|319410089|emb|CBY90425.1| threonyl-tRNA synthetase (threonine-tRNA ligase; ThrRS) [Neisseria
           meningitidis WUE 2594]
          Length = 637

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 160/443 (36%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVRDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQLVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|312881548|ref|ZP_07741334.1| threonyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370825|gb|EFP98291.1| threonyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 642

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 152/450 (33%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +RE+
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVREK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG +D Y   M   A  N +     P +      IF  
Sbjct: 286 LTEYDYQEVKGPLIMDRVLWERSGHWDKYADAMFTTASEN-RDYALKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P     S E    ++    Q   + D        E   +
Sbjct: 404 MVYDTYETFGFSNIAVKLSTRPEKRVGSDEIWDESEQALKQSLEAMDIPYEIQEGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      ++LP  
Sbjct: 464 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFNLPGR 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   + +    V +    +G++     ++   + G    W   ++P +  ++NI  
Sbjct: 494 LGATYVDENNERQVPVMIHRAILGSLERFIGILIEEYYGFFPTW---LSPEQAIIMNITD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 551 KQS---DYVHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++ ++Y     S+ +
Sbjct: 608 AVRTRKGKDLGKFKVDDFVSYIQDEISSRK 637


>gi|283797704|ref|ZP_06346857.1| threonine--tRNA ligase [Clostridium sp. M62/1]
 gi|291074600|gb|EFE11964.1| threonine--tRNA ligase [Clostridium sp. M62/1]
          Length = 650

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 159/447 (35%), Gaps = 48/447 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + ++ +++E   RD      +L L   M+H    G   +LP G +  + +    RE   +
Sbjct: 236 EAYITMMEEAKKRDHRKLGKELGLF--MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKK 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + +  LW  SG +D Y   M      +++     P +      ++ S  +
Sbjct: 294 AGYVEISTPIILNRSLWETSGHWDHYKNNMYT-TVIDEEDYAIKPMNCPGGVLVYASEPR 352

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  K     +     
Sbjct: 353 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIKDEIKGVATLIN 411

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K   +   + P     S E   LA  G                 +   +   
Sbjct: 412 EVYTLFGFKY-HVELSTRPEDSMGSDEDWELATEGLRSALDELGLPYVVNEGDGAFYGPK 470

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
           I                               +    R  + G I   F    ++     
Sbjct: 471 IDF---------------------------HLEDCIGRTWQCGTIQLDFQLPQRF----E 499

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I    
Sbjct: 500 LEYTGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---S 553

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+Y  LS+ G     D   E+IG +   A     P  ++VG K   +  V +
Sbjct: 554 DKYADYAAKVYESLSEAGIRAEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSV 613

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     SLE  I       ++ 
Sbjct: 614 RSRFAGDEGASSLESFIEKIQKEIASK 640


>gi|162218055|ref|YP_620875.2| threonyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|162227933|ref|YP_835120.2| threonyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|254245609|ref|ZP_04938930.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
 gi|124870385|gb|EAY62101.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
          Length = 635

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 151/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFDHIDIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLTWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +AP++  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPYQAIVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLTQTLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPVEAFVERLQEDLRSFK 635


>gi|85059397|ref|YP_455099.1| threonyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123738953|sp|Q2NT31|SYT_SODGM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84779917|dbj|BAE74694.1| threonyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 642

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 157/448 (35%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + Y   + +   RD      +L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLNTYLQHLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTLFRELETFVRMKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G +D+Y + M   +  N +     P +      IF   
Sbjct: 286 KAYQYQEVKGPFMMDRVLWEKTGHWDNYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   N     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVRDEVNNCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S++    A+                 P E   + 
Sbjct: 404 VYDMYGTFGFEKILVKLSTRPEKRIGSNDVWGRAEQDLAAALTENGIAFEYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I    +                               R  + G +      +SLP  +
Sbjct: 464 PKIEFTLLDC---------------------------LDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++ G + +    V +    +G+M     ++   + G    W   + P ++ ++NI  +
Sbjct: 494 NASYVGENNERVVPVMIHRAILGSMERFIGILTEEYAGFYPTW---LVPTQVVVMNITDN 550

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +   K+  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 551 QS---EYVAKLTEKLSAAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEACKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + + E+I    H   + 
Sbjct: 608 VRTRRGKDLGSIDVNEIITKLQHEIRSR 635


>gi|54295556|ref|YP_127971.1| threonyl tRNA synthetase [Legionella pneumophila str. Lens]
 gi|73919803|sp|Q5WT82|SYT_LEGPL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53755388|emb|CAH16884.1| Threonyl tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 637

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 154/447 (34%), Gaps = 50/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD       L L        + G+  W P G      +   +R    
Sbjct: 228 LEEYLYRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLV 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +
Sbjct: 286 DFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G+MR R  +  DA+ F  T +  +     M    
Sbjct: 345 KSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIF-CTEDQIQSEVAMMLELV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I  R    P     S +    A+T        ++      P E   +  
Sbjct: 404 QSVYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP- 297
            I  +                                     +G I+  GT    +S+P 
Sbjct: 464 KIECSLSDC---------------------------------LGRIWQCGTIQVDFSMPA 490

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A++   DG K   V +    +G+      ++   + GK  +W   ++P +  ++ I 
Sbjct: 491 RLEASYVAEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAVVLTI- 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +
Sbjct: 547 --SEKQNEYAEKVRKTLQKRGVRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQ 604

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R       M+++ + +  +   
Sbjct: 605 VAVRTRDGIDLGVMTIDTICDTLTQEI 631


>gi|238791701|ref|ZP_04635338.1| Threonyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238728805|gb|EEQ20322.1| Threonyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 642

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+          D      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENDIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLTEIRSR 635


>gi|268686074|ref|ZP_06152936.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626358|gb|EEZ58758.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 637

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 159/443 (35%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L         D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 551 ADYCREVAAKLQAADFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEITD 632


>gi|293392211|ref|ZP_06636545.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952745|gb|EFE02864.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 643

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 159/450 (35%), Gaps = 47/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + +L  L+E   RD       L L    + + + G+  W   G      +   +R +
Sbjct: 227 KQLEAYLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW ++G + +YG  M   +  N +     P +      IF  
Sbjct: 285 LKQYDYQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTSSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F + P+  +        
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCM-PDQVESEVTSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G ++I ++  + P     S E    A+    +              E   +
Sbjct: 403 MVYDIYSTFGFENIKVKLSTRPEKRIGSDEMWDKAEADLAKALEHNGLSYEIQEGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSL 296
              +                                    R  + G I   F+   +   
Sbjct: 463 GPKLEFALTDS---------------------------LDREWQCGTIQLDFFLPER--- 492

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            ++A++ G D +    V +    +G++     +I   + G   +W   +AP +  ++NI 
Sbjct: 493 -LNASYVGEDNERKIPVMIHRAILGSIERFIGIITEEYAGFFPVW---LAPTQAVVMNIT 548

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +   K
Sbjct: 549 ---DSQSEYVQKVAKQLSDAGLRVKTDLRNEKVGFKIREHTLHRVPYMLVCGDKEIEAGK 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R        ++EE ++    +  N 
Sbjct: 606 VAVRTRKGQDLGTFTVEEFLDILKKQVRNR 635


>gi|153803259|ref|ZP_01957845.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124121199|gb|EAY39942.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 516

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + N  G 
Sbjct: 108 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEIFIRHKLNEYGY 165

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 166 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 224

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 225 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 283

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    ++        + D        E   +   I  
Sbjct: 284 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEF 343

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 344 TLYDC---------------------------LDRAWQCGTV---QLDFNLPTRLGATYV 373

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 374 GESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 427

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 428 DYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 487

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +     ++ +
Sbjct: 488 GKDLGKFKLDDFIAHIQAEIASRK 511


>gi|78486008|ref|YP_391933.1| threonyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123769059|sp|Q31F14|SYT_THICR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78364294|gb|ABB42259.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Thiomicrospira
           crunogena XCL-2]
          Length = 642

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 164/448 (36%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +++E    AE   H+ + ++     + + + G+  W P G      V   +R++ 
Sbjct: 229 KDYLRMMEE----AEKRDHRKLGKSLDLFHVDELAPGMAFWHPKGSTLYRVVENYMRQQL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW +SG +D +   M      N +     P +      ++  +
Sbjct: 285 VENDYQEIRTPLIMDRTLWEKSGHWDKFKDNMFTTETEN-RDYAVKPMNCPGHIQVYNHN 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP    +  L  R+E      G+MR R F   DA+ F  TPE  K         
Sbjct: 344 LSSYRDLPIRLAEFGLVHRNEPSGTLHGLMRVRSFTQDDAHIF-CTPEQIKEEVQACIDL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               +   G  +I ++  + P       +   LA+    Q     +      P E   + 
Sbjct: 403 VFNTYADFGFDNIQVKFSTRPEQRVGEDDVWDLAEEALEQTLKDANLEYALQPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--- 297
             I                               K    R  + G I      +S+    
Sbjct: 463 PKIEFQL---------------------------KDCIGRVWQCGTI---QLDFSMTQEE 492

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            ++A + GAD  K H V +    +G++     ++   ++GK   W   +AP ++ + +I 
Sbjct: 493 RLNAVYIGADNEKHHPVMIHRAILGSLERFVGILVEHYEGKFPTW---LAPTQLVIASIA 549

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               V  +       +L K G  V  D   E++G +     L   P  ++VG + + +  
Sbjct: 550 ---DVHNEYVNDFAKKLKKHGFRVESDLRNEKVGFKIREHTLQRVPYILVVGDQEMENGT 606

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R        S EE+I++ S   S
Sbjct: 607 VNVRARGGENLGSFSFEELIDHLSEDVS 634


>gi|240127689|ref|ZP_04740350.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 648

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 159/443 (35%), Gaps = 45/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +             +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVSEARAFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E   +   I 
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDALGRSWQCGT---LQLDFVLPERLDAEY 507

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +  
Sbjct: 508 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVIMNIT---ENQ 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ A+L         D   E+IG +        FP Q+++G K   ++KV ++ R
Sbjct: 562 ADYCREVAAKLQAADFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 621 KAEDLGSLDLDDFIAQLQQEITD 643


>gi|270158051|ref|ZP_06186708.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|269990076|gb|EEZ96330.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
          Length = 639

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 156/451 (34%), Gaps = 50/451 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L        + G+  W P G      +   +R      G
Sbjct: 231 YLFRLEEAEKRDHRKLGKSLELF--HFQDIAPGMVFWHPKGWTIYQELERYMRHRLADFG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG + ++  EM  + +  ++     P +      +F   +KSY
Sbjct: 289 YQEIRTPQLVDRVLWEKSGHWANFRDEMF-VTETENRHYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R E      G+MR R  +  DA+ F  T +  +     M      +
Sbjct: 348 RDLPLRFSEFGNCHRCEPSGSLHGLMRVRNMVQDDAHIF-CTEDQIQSEVAMMLELVQSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  R    P     S E    A+    Q    ++      P E   +   I 
Sbjct: 407 YTDFGFNEIKYRLALRPEKRVGSDEVWDKAEAALKQAMKERNIEWVDAPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MS 299
            +                                     +G I+  GT    +S+P  + 
Sbjct: 467 CSLSDC---------------------------------LGRIWQCGTIQVDFSMPGRLD 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG K   V +    +G+      ++   + GK  +W   ++P +  ++ I    
Sbjct: 494 AIYIAEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAIIMTI---S 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +  EK+   L K G    +D   E+IG +     L   P  +++G K V   +V +
Sbjct: 548 EKQSEYAEKVTQILQKNGIRANFDLRNEKIGFKIREHTLQKIPYLLVIGDKEVESGQVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + R       M+++ + +      ++   ++
Sbjct: 608 RTREGTDLGLMTIDTICDTLMQEIAHKGSIV 638


>gi|73919802|sp|Q5ZS05|SYT_LEGPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 637

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 154/447 (34%), Gaps = 50/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD       L L        + G+  W P G      +   +R    
Sbjct: 228 LEEYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLV 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +
Sbjct: 286 DFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G+MR R  +  DA+ F  T +  +     M    
Sbjct: 345 KSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIF-CTEDQIQSEVAMMLELV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I  R    P     S +    A+T        ++      P E   +  
Sbjct: 404 QSVYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP- 297
            I  +                                     +G I+  GT    +S+P 
Sbjct: 464 KIECSLSDC---------------------------------LGRIWQCGTIQVDFSMPA 490

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A++   DG K   V +    +G+      ++   + GK  +W   ++P +  ++ I 
Sbjct: 491 RLEASYVAEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAIVLTI- 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +
Sbjct: 547 --SEKQNEYAEKVRKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQ 604

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R       M+++ + +  +   
Sbjct: 605 VAVRTRDGIDLGVMTIDTICDTLTQEI 631


>gi|238757782|ref|ZP_04618965.1| Threonyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238704025|gb|EEP96559.1| Threonyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 642

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDKLLTEIRSR 635


>gi|298369384|ref|ZP_06980702.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283387|gb|EFI24874.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 648

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 162/444 (36%), Gaps = 45/444 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E +  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPRGWALWQTIEQHMRKELDAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YREVKTPQIMDKAFWEKSGHWDNYKDNMF-VTQSEKREYAVKPMNCPGHVQIFNNSLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +       +     +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIF-CTEDQIVDEARRFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G      +       +P E   +   I 
Sbjct: 418 YKQFGFHDVAVKLSLRPEKRAGSDDIWDKAEQGLRDALTACGVEWEELPGEGAFYGPKIE 477

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 478 Y---------------------------HVKDAIGRSWQCGT---LQLDFVLPDRLDAEY 507

Query: 303 KGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +G+   V +    +G++     ++  +H G   +W   +AP ++ ++NI  H    
Sbjct: 508 VTESNGRARPVMLHRAILGSLERFIGILIENHAGSFPLW---LAPVQMVVMNITEH---Q 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++  RL      V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 562 TDYCRQVVERLQAENFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 620

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +++++ I+      + +
Sbjct: 621 KAEDLGSLNIDDFISQLKQEIAES 644


>gi|291559712|emb|CBL38512.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SSC/2]
          Length = 641

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 160/445 (35%), Gaps = 47/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 230 YLTMMEEARKRDHRKLGKELGLF--MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +D+     P +      ++ S  +SY
Sbjct: 288 YVEISTPIMLSRHLWETSGHWDHYKENMYT-TVIDDQDFAIKPMNCPGGVLVYDSEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     ++
Sbjct: 347 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E   LA                          D+  
Sbjct: 406 YNLFGFKY-HVELSTRPDDSMGSDEDWELATDSLRAALD-----------------DLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              + E   A Y    D H E              R  + G I   F    ++       
Sbjct: 448 DYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF----DLH 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  + +     G++     ++     G    W   +AP ++ +I I      
Sbjct: 494 YTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVEVIPI---SDK 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+   L   G     D   E++G +   A L   P  ++VG K   +  V ++ 
Sbjct: 548 HLDYANKVLDTLKAAGIRADIDTRAEKMGYKIREAQLQKIPYMLVVGGKEEENGAVSVRS 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M L++ +       +N 
Sbjct: 608 RFKGDEGQMKLDDFLAAIKEEIANR 632


>gi|126667900|ref|ZP_01738865.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126627560|gb|EAZ98192.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 641

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 150/438 (34%), Gaps = 38/438 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      KL L    + + + G+  W P G      +   +R+  +R G
Sbjct: 231 YVHRIEEAEKRDHRKVGKKLNLF--HMQEEAPGMVFWHPDGWTIYQKMEQYMRDILHRHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S  LW +SG +D + + M              P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVSRSLWEKSGHWDKFKEGMFTTESEK-HDFAIKPMNCPCHIQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F   DA+ F       ++  +K       +
Sbjct: 348 KDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIF-CEESDIQNEVSKFIDLLHEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     S E    ++    Q    +      +P E         
Sbjct: 407 YKDFGFTEILYKLSTRPEKRVGSDEVWDKSEAALEQALNREGVKWELLPGEG-------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A         L D +    +     ++       G +Y          
Sbjct: 459 ------------AFYGPKIEFSLKDCIGRVWQCGTIQVDFSMPGRLGAQY-------VAD 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   V +    +G+      ++   ++G    W   +AP +++++NI  +    R+ 
Sbjct: 500 NSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPSW---LAPTQVAILNITDN---QREY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           CE +  +   +G  V  D   E+IG +     +   P  V+VG K V ++ V ++ R   
Sbjct: 554 CENLAKKWDSLGFRVNADLRNEKIGFKIREHTINKVPFLVVVGDKEVENNTVAVRTRKGE 613

Query: 425 IREDMSLEEVINYASHRF 442
               +SLE          
Sbjct: 614 DLGTLSLEAFEQLLQEDV 631


>gi|88706032|ref|ZP_01103740.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88699746|gb|EAQ96857.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 645

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 157/443 (35%), Gaps = 44/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      KL L      + + G+  W P G      +   +RE+Q   
Sbjct: 230 QYLHRIEEAEKRDHRKIGKKLDLF--HTQEEAPGMVFWHPQGWTIYQVIEQYMREQQRAN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW +SG  D +G +M  L   +++     P +      +F   ++S
Sbjct: 288 GYQEIKTPQLVDMSLWEKSGHADKFGDDMFMLQA-DEREFAVKPMNCPCHVQVFNQGLRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F   D + F  T E  +   +        
Sbjct: 347 YRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDGHIF-CTEEQIQSEVSTFIDFLHA 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   +  R  + P     S E    A+        +++     +P E   +   I
Sbjct: 406 VYRDFGFDEVIYRLSTRPPKRVGSDEDWDRAEKALADALDAQELDWQELPGEGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
             +                            K    R  ++G +      +S+P  + A 
Sbjct: 466 EFSL---------------------------KDCIGRVWQMGTV---QVDFSMPGRLDAQ 495

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V +    +G+      ++  + +G   +W   +AP +  ++NI    + 
Sbjct: 496 YVAEDGSRKTPVMLHRAILGSFERFIGILIENFEGAFPVW---LAPKQAVVLNIT---EK 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + +   L   G  VF D   E+IG +     +   P  ++VG K V    V ++ 
Sbjct: 550 QDEYVQFVEDSLKNKGFRVFSDLRNEKIGFKIREHTIQRIPYLLVVGEKEVEAKTVAVRS 609

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       MS+E          +
Sbjct: 610 RNGEDLGTMSIEAFAEILDRDVA 632


>gi|105892737|gb|ABF75902.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia AU 1054]
 gi|116647586|gb|ABK08227.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia HI2424]
          Length = 618

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 151/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 214 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 271

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 272 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 330

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 331 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAMSV 389

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 390 YKDFGFDHIDIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLTWEELPGEGAFYGPKIE 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 450 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 479

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +AP++  ++NI    +  
Sbjct: 480 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPYQAIVLNIA---ESQ 533

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 534 AEYAQSLTQTLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 593

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 594 GGVDLGVMPVEAFVERLQEDLRSFK 618


>gi|254481727|ref|ZP_05094970.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214037856|gb|EEB78520.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 640

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 156/448 (34%), Gaps = 50/448 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      KL L      + + G+  W P G      +   +RE Q + 
Sbjct: 230 QYLNRIEEAEKRDHRKIGKKLDLF--HTQEEAPGMVFWHPAGWSIYQTIEQYMREGQQQH 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P L    LW +SG  D +G +M  L    D+     P +      +F   +KS
Sbjct: 288 DYQEIKTPQLVDLSLWKKSGHADKFGDDMFMLKAE-DREFAVKPMNCPCHVQVFNQGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F+  DA+ F  T E  +   +        
Sbjct: 347 YRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFVQDDAHIF-CTEEQIQPEVSSFIDFLHS 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   +  R  + P     S +    A+        ++D     +P E   +   I
Sbjct: 406 VYEDFGFADVIYRLSTRPEQRVGSDQDWDRAEKALADALNAQDLPWETLPGEGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--M 298
             +                                     +G ++  GT    +S+P  +
Sbjct: 466 EFSLKDC---------------------------------IGRVWQLGTIQVDFSMPGRL 492

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   DG     V +    +G+      ++   ++G   I+P  +AP +  ++NI   
Sbjct: 493 DAQYVAEDGSRQVPVMLHRAILGSFERFIGILIEHYEG---IFPTWLAPTQAVVLNITDK 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  + +   L   G  V  D   E+IG +     +   P  ++VG K V    + 
Sbjct: 550 ---QSEYAKSVEDSLKNKGFRVISDLRNEKIGFKIREHTIQKVPYLLVVGDKEVESQTLA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M LE    + +   +  
Sbjct: 607 VRARRGEDLGSMDLEAFETHLADDVARR 634


>gi|113867357|ref|YP_725846.1| threonyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123134164|sp|Q0KBZ3|SYT_RALEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113526133|emb|CAJ92478.1| Threonyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 635

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 152/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + +T     + + + G+  W P G +    V   +R   
Sbjct: 229 EAYLHMLEE----AEKRDHRKLGKTLDLFHLQEEAPGMVFWHPKGWQVWQAVEQYMRGRL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW +SG + +Y + M  + +   +     P +      IF   
Sbjct: 285 TDAGYDEVRTPQVMDRSLWEKSGHWQNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    +     R+E      G+MR R F+  DA+ F  T E            
Sbjct: 344 LRSYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEEQIVAEAKAFNEL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K + ++    P     S E    A+ G      +       +P E   + 
Sbjct: 403 AFSVYDDFGFKDVKVKLSLRPDQRAGSDEIWDHAEEGLRLALRACGVDWEELPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                               K    R  + G +          + A
Sbjct: 463 PKVEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLDA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   V +    +G+      ++  +H G    W   +AP ++ ++NI     
Sbjct: 495 EYVSEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAW---LAPEQVVVMNIA---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E +   L K G     D   E+I  +     L   P  ++VG K    S+V ++
Sbjct: 549 SQAEYAESVVQLLQKQGFRAKADLRNEKITYKIREHSLQKVPYLLVVGDKERDASQVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M +   +    +  ++ 
Sbjct: 609 ARGNVDLGVMPVSAFVERLKNDVASK 634


>gi|295092070|emb|CBK78177.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Clostridium cf.
           saccharolyticum K10]
          Length = 650

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 160/447 (35%), Gaps = 48/447 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + ++ +++E   RD      +L L   M+H    G   +LP G +  + +    RE   +
Sbjct: 236 EAYITMMEEAKKRDHRKLGKELGLF--MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKK 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + +  LW  SG +D Y   M      +++     P +      ++ S  +
Sbjct: 294 AGYVEISTPIILNRSLWETSGHWDHYKNNMYT-TVIDEEDYAIKPMNCPGGVLVYASEPR 352

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  K     +     
Sbjct: 353 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIKDEIKGVATLIN 411

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G K   +   + P     S E   LA  G                 +   +   
Sbjct: 412 QVYTLFGFKY-HVELSTRPEDSMGSDEDWELATEGLRSALDELGLPYVVNEGDGAFYGPK 470

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
           I                               +    R  + G I   F    ++     
Sbjct: 471 IDF---------------------------HLEDCIGRTWQCGTIQLDFQLPQRF----E 499

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I    
Sbjct: 500 LEYTGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---S 553

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+Y  LS+ G     D   E+IG +   A     P  ++VG K   +  V +
Sbjct: 554 DKYADYAAKVYESLSEAGIRAEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSV 613

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     SLE  I       ++ 
Sbjct: 614 RSRFAGDEGASSLESFIEKIQKEIASK 640


>gi|270261557|ref|ZP_06189830.1| threonyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270045041|gb|EFA18132.1| threonyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 642

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N+       +
Sbjct: 349 RDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRAEVNECIRMVYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + +    A+                 P E   +   I 
Sbjct: 408 YGTFGFEKIAVKLSTRPEKRIGTDDMWTRAEEDLAAALTENGIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      + LP  + A++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFFLPGRLGASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VGENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTW---IAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SDYVQQLTKKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EV++       + 
Sbjct: 612 RGKDLGSLDVNEVVDKLLKEIRSR 635


>gi|255526047|ref|ZP_05392970.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255510233|gb|EET86550.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 638

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE  +   
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMIIRNTLQNFWREMHSAAD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      +++     P +      ++++ I SY
Sbjct: 289 YDEIMTPVILNEKLWRQSGHWDHYKENMY-FTKIDNEDYAIKPMNCPGSILVYKNTIHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++ L  R E      G+MR R F   DA+ F      +    N +       
Sbjct: 348 RELPLRYAEMGLAHRHEKSGALHGLMRVRCFTQDDAHMFLAKDNITDEIVN-VIKLIDDF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E    A  G  +   +          +   +   I 
Sbjct: 407 YKVFGFEYF-VELSTRPEDSMGSDEDWEAATNGLRKALDTIGLKYKVNEGDGAFYGPKID 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G +     +       T+ G
Sbjct: 466 F---------------------------HLRDCIGRTWQCGTV-QLDFQMPERFDLTYIG 497

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H   M      G++     ++   + G    W   +AP ++ ++NI        D
Sbjct: 498 ADGEKHRPVMVHRVVFGSVERFIGILIEHYAGAFPAW---LAPVQVKIMNITDD---QID 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V  D   E+IG +   A L   P  +++G K + ++ V ++ R  
Sbjct: 552 YANKVAKELKKNKIRVEVDLRNEKIGYKIREAQLQKVPYMLVLGDKEMKENTVAVRSRKL 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+L++ +          
Sbjct: 612 GDLGAMALDQFVEKIKGEIDRK 633


>gi|213161901|ref|ZP_03347611.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 530

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 120 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 177

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 178 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 236

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 237 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 295

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 296 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 355

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 356 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLSASY 385

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D +    V +    +G+M     ++     G    W   +AP ++ ++NI       
Sbjct: 386 VGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT---DSQ 439

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 440 SEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTR 499

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + +VI        + 
Sbjct: 500 RGKDLGSLDVNDVIEKLQQEIRSR 523


>gi|91776355|ref|YP_546111.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
 gi|123254150|sp|Q1GZR7|SYT_METFK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91710342|gb|ABE50270.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
          Length = 635

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 151/446 (33%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R      +   + G+  W P G      V   +R     
Sbjct: 231 YLHMLEE----AEKRDHRKLGRQLDFFHMQDEAPGMVFWHPRGWVIWQEVEQYMRNMFRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PT+    +W +SG + +Y   M   A  N +     P +      IF S + 
Sbjct: 287 FGYQEVRTPTIMDRVMWEKSGHWQNYHDNMFTTASEN-RDYAVKPMNCPGHIQIFNSTLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T +  K       V   
Sbjct: 346 SYRDLPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVKDEVADFIVMLY 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           + +   G   + ++  + P     + E    A+          +      P E   +   
Sbjct: 405 KAYKDFGFNEVLVKLSTRPEKRVGTDEAWDKAEEALAVALRQNNLDFELQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      ++LP  + A
Sbjct: 465 IEFTL---------------------------KDSLGRLWQCGTI---QLDFNLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  + H V +    +G+M     ++  ++ G    W   +AP +  ++NI     
Sbjct: 495 EYVDEDNSRKHPVMLHRAIVGSMERFLGILIENYAGAMPAW---LAPVQAMVLNISDG-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D    + A L K G  V  D   E+I  +     L   P  +I G + +   +V ++
Sbjct: 550 -QADYVSSVVAELRKNGFRVDSDLRNEKITYKIREHSLQKLPYLLIAGEREMQTGQVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M L   I       ++ 
Sbjct: 609 TRKGEDLGSMPLSAFIERLKSDVADK 634


>gi|52842920|ref|YP_096719.1| threonyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52630031|gb|AAU28772.1| threonyl tRNA synthase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 646

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 154/447 (34%), Gaps = 50/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD       L L        + G+  W P G      +   +R    
Sbjct: 237 LEEYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLV 294

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +
Sbjct: 295 DFGYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGL 353

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G+MR R  +  DA+ F  T +  +     M    
Sbjct: 354 KSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIF-CTEDQIQSEVAMMLELV 412

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I  R    P     S +    A+T        ++      P E   +  
Sbjct: 413 QSVYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGEGAFYGP 472

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP- 297
            I  +                                     +G I+  GT    +S+P 
Sbjct: 473 KIECSLSDC---------------------------------LGRIWQCGTIQVDFSMPA 499

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A++   DG K   V +    +G+      ++   + GK  +W   ++P +  ++ I 
Sbjct: 500 RLEASYVAEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAIVLTI- 555

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +
Sbjct: 556 --SEKQNEYAEKVRKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQ 613

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R       M+++ + +  +   
Sbjct: 614 VAVRTRDGIDLGVMTIDTICDTLTQEI 640


>gi|296163127|ref|ZP_06845898.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295886629|gb|EFG66476.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 635

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 153/442 (34%), Gaps = 39/442 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M        +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E   +   
Sbjct: 405 SVYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                       + D+L  + +     +++      G +Y        
Sbjct: 465 VEY--------------------HIRDALGRSWQCGTLQLDMVLPERLGAEY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + +   + +    +G+M     ++   H G    W   +AP ++ ++NI    +   
Sbjct: 498 AEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---ESQT 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R 
Sbjct: 552 EYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARG 611

Query: 423 TGIREDMSLEEVINYASHRFSN 444
                 M L+  I        +
Sbjct: 612 GVDLGVMPLDTFIERLRQDVQS 633


>gi|284006267|emb|CBA71503.1| threonyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 640

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 46/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   IR + N   
Sbjct: 232 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWVIFRELETFIRTKLNEYR 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPLMMDRILWEKTGHWENYKENMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +               +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILTEVKSCIKMIYHV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     +       D  E+ +  +   ++F        F     
Sbjct: 408 YATFGFEKIAVKLSTRPEKRIGTD---AQWDRAESDLAKALGDIEFDYQPGEGAFYGPKI 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
             ++ +                             R  + G +      +SLP  + A++
Sbjct: 465 EFTLYDC--------------------------LDRAWQCGTV---QLDFSLPSRLGASY 495

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G++     ++   + G    W   +AP +I +INI       
Sbjct: 496 VDENNERQVPVMIHRAVLGSLERFIGILTEQYAGFFPTW---LAPLQIVIINIT---DAQ 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+  +LS  G  V  D   E+IG +     L   P  ++ G K V  ++V ++ R
Sbjct: 550 ADFVQKVVKKLSNFGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESNQVSVRTR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                    + E            R
Sbjct: 610 DGKDLGTFDVTEFAERVLDEIRTRR 634


>gi|282599730|ref|ZP_05971662.2| threonine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282568410|gb|EFB73945.1| threonine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 653

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 151/445 (33%), Gaps = 44/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 243 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKSYN 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 301 YQEVKGPFMMDRVLWERTGHWENYKDAMFTTSSEN-REYCVKPMNCPGHVQIFNQGLKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +               +
Sbjct: 360 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILSEVTSCIEMIYDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + +    A+        SK       P E   +   I 
Sbjct: 419 YSTFGFEKIVVKLSTRPEKRIGTDDMWDTAEADLANALKSKGIEFEYQPGEGAFYGPKIE 478

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      + LP  ++A++
Sbjct: 479 FTLYDC---------------------------LDRAWQCGTV---QLDFFLPGRLNASY 508

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 509 VGENNERITPVMIHRAVLGSLERFIGILTEEYAGFFPTW---LAPQQVVVMNIT---DTQ 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +++  +L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 563 AEYVQELVNKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVSVRTR 622

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  + ++E +        + +
Sbjct: 623 RGKDLGSLDVDEFMTKLLKEIRSRQ 647


>gi|188025947|ref|ZP_02960307.2| hypothetical protein PROSTU_02247 [Providencia stuartii ATCC 25827]
 gi|188021023|gb|EDU59063.1| hypothetical protein PROSTU_02247 [Providencia stuartii ATCC 25827]
          Length = 653

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 151/445 (33%), Gaps = 44/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 243 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKAYN 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 301 YQEVKGPFMMDRVLWERTGHWENYKDAMFTTSSEN-REYCVKPMNCPGHVQIFNQGLKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +               +
Sbjct: 360 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILSEVTDCIKMIYDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + +    A+    Q    +       P E   +   I 
Sbjct: 419 YATFGFEKIVVKLSTRPEKRIGTDDMWDTAEADLAQALKDQGIEFEYQPGEGAFYGPKIE 478

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      + LP  ++A++
Sbjct: 479 FTLYDC---------------------------LDRAWQCGTV---QLDFFLPGRLNASY 508

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 509 VGENNERIVPVMIHRAVLGSLERFIGILTEEYAGFFPTW---LAPQQVVVMNIT---DTQ 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++ ++L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 563 ADYVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVSVRTR 622

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  + + E  N       + +
Sbjct: 623 RGKDLGSLDVNEFTNKLLEEIRSRQ 647


>gi|238787089|ref|ZP_04630889.1| Threonyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238724877|gb|EEQ16517.1| Threonyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 642

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLTEIRSR 635


>gi|157370384|ref|YP_001478373.1| threonyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166987325|sp|A8GDQ5|SYT_SERP5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157322148|gb|ABV41245.1| threonyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 642

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N+       +
Sbjct: 349 RDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRAEVNECIRMVYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     + +    A+                 P E   +   I 
Sbjct: 408 YGTFGFDKIAVKLSTRPEKRIGTDDMWTRAEEDLAAALTENGIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      + LP  + A++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFFLPGRLGASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VGENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTW---IAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 SDYVQQLTKKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + EV++       + 
Sbjct: 612 RGKDLGSLDVNEVVDKLLKEIRSR 635


>gi|167587363|ref|ZP_02379751.1| threonyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 635

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 150/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFDHIDIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLAWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +APF+  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVW---LAPFQAIVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G     D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQTLQKQGVRAAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPVEAFVERLQEDLRSFK 635


>gi|329296183|ref|ZP_08253519.1| threonyl-tRNA synthetase [Plautia stali symbiont]
          Length = 642

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 146/444 (32%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKPLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKEVMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQVRDEVNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+    +     +      P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEVDLAEALKENNIPFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  + AT+
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPKRLDATY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G        V +    +G+M     ++     G    W   +AP +  ++NI       
Sbjct: 498 VGETNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPSW---LAPVQAVVMNITDG---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 552 AEYVSELTKKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M ++  +        + 
Sbjct: 612 RGKDLGSMDVDVFVEKLQQEIRSR 635


>gi|260774298|ref|ZP_05883213.1| threonyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260611259|gb|EEX36463.1| threonyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 642

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR +      
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRHKLTEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +  G ++I ++  + P     S E    ++        +          E   +   I  
Sbjct: 410 NTFGFENIAVKLSTRPEKRVGSDEIWDKSEEALKHSLDAMGIAYEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TLYDC---------------------------LDRAWQCGTV---QLDFNLPSRLGATYV 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G   +    V +    +G++     ++   + G    W   +AP +  ++NI        
Sbjct: 500 GESNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITDK---QA 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 DYAQEVVQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   L++ I +     S+ +
Sbjct: 614 GKDLGKFKLDDFITHIQAEVSSRQ 637


>gi|295677048|ref|YP_003605572.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436891|gb|ADG16061.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 635

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 150/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M        +     P +      +F   ++
Sbjct: 287 AGYLEIKTPLIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFIGESI-AFNTLAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E   +   
Sbjct: 405 SVYRDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R  + G          LP  + A
Sbjct: 465 VEY---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   + +    +G+M     ++   H G    W   +AP ++ ++NI    +
Sbjct: 495 EYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++
Sbjct: 549 SQAEYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R       M ++  I        +
Sbjct: 609 ARGGVDMGVMPVDAFIERLRQDVQS 633


>gi|119945879|ref|YP_943559.1| threonyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|166225485|sp|A1SWU5|SYT_PSYIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119864483|gb|ABM03960.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychromonas
           ingrahamii 37]
          Length = 635

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 154/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   +L  L+E   RD      +L L    + + + G+  W   G      +   +RE+
Sbjct: 226 KQLNAYLKRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHSNGWTIYRELEKYVREQ 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG +  Y   M   +  N +     P +      IF  
Sbjct: 284 TEAYDYQEVKAPQILDRALWEKSGHWGKYKDNMFCTSSEN-RDYAIKPMNCPGHLQIFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +    
Sbjct: 343 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRAFTQDDAHIF-CTEEQILDEVSACIQ 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G   I ++  + P            A+        + +     +P E   +
Sbjct: 402 MVFECYKTFGFDDIAVKLSTRPDQRVGDDATWDKAEAALANALTTNNINYGVLPGEGAFY 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    RG + G I      +S+P  
Sbjct: 462 GPKIEFTLYDC---------------------------LGRGWQCGTI---QLDFSMPGR 491

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A+F G D + H  V +    +G++     ++   + G   ++P  ++P ++ ++NI  
Sbjct: 492 LDASFVGEDNERHTPVMIHRAILGSLERFIGILTEEYAG---VYPTWLSPKQVVVMNITD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++  +L K G     D   E+IG +     L   P  +++G + V   +V
Sbjct: 549 KQSAFVD---EVVNKLKKSGIRAISDLRNEKIGFKIREHTLKRVPYLLVIGDQEVEAGEV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         +++   Y        R
Sbjct: 606 AVRTRKGDDLGKFKVDDFAAYIKEEIITRR 635


>gi|85711636|ref|ZP_01042693.1| threonyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85694496|gb|EAQ32437.1| threonyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 638

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 157/452 (34%), Gaps = 49/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   + H    + G+  W   G      +   +R
Sbjct: 227 KQLKAYLQRLEE----AEKRDHRKIGKAQDLFHWQEEAPGMVFWHHNGWTIFRELEDFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+       E+  P +    LW +SG ++ +   M   +  N +     P +      IF
Sbjct: 283 EKLREYQYQEVKGPMMMDRVLWEKSGHWEKFSDLMFTTSSEN-REYAVKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +      
Sbjct: 342 NQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEDQVQDEVAAC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G   I ++  + P            ++        + D     +P E  
Sbjct: 401 IKMVYETYETFGFDKIDVKLSTRPEKRLGDDATWDRSEKALADALKAHDIDFTYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G I      ++LP
Sbjct: 461 FYGPKIEFTLFDC---------------------------LGRAWQCGTI---QLDFALP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             ++AT+ G D   H  V +    +G++     ++   + G   +W   +AP ++ L+NI
Sbjct: 491 GRLNATYVGEDNDRHTPVMIHRAILGSLERFMGILIEEYAGNFPLW---LAPTQVVLMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +    RD   K+   L++ G     D   E+IG +     L   P  ++VG K V   
Sbjct: 548 TDN---QRDYVNKVVKSLNEKGIRASADLRNEKIGFKIREHTLKRVPYLLVVGDKEVEAG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +V ++ R         LE+ +          +
Sbjct: 605 EVAVRTRSGEDLGKFPLEQFVEQLQAEVRTRK 636


>gi|125973743|ref|YP_001037653.1| threonyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256005747|ref|ZP_05430701.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281417900|ref|ZP_06248920.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166223337|sp|A3DET1|SYT_CLOTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125713968|gb|ABN52460.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|255990281|gb|EEU00409.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409302|gb|EFB39560.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316940063|gb|ADU74097.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 635

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 162/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    I++   G   ++P G    + +    REE  + G
Sbjct: 231 YITRIEEAKKRDHRKLGRELDLFD--IYEEGPGFPFFMPKGMVLRNVLEEYWREEHRKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M      ++      P +      +++  + SY
Sbjct: 289 YQEIKTPIILNEELWHRSGHWDHYKENMY-FTKIDEADFAIKPMNCPGGMLVYKRKLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TP+  +     +       
Sbjct: 348 RDLPQRLAELGLVHRHELSGVLHGLMRVRCFTQDDAHIF-MTPDQIESEILGVISLIDDF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E    A          K  +D+ I   +  F     
Sbjct: 407 YKVFGFKY-HVELSTRPENSMGSDEDWERATNALKNAL-EKKGIDYKINEGDGAF----- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I     +       T+ G
Sbjct: 460 -----------YGPKIDFHLEDSIG----------RTWQCGTI-QLDFQMPERFDLTYIG 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++    A++   + G   +W   ++P ++ ++ I    +   D
Sbjct: 498 PDGEKHRPVMIHRVVFGSIERFIAILTEHYAGAFPVW---LSPVQVKILPIL---EKQHD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G  V  D   E+IG +   A L   P  +++G K + +  V ++ R  
Sbjct: 552 YVAEVKKALEEKGVRVEADLRNEKIGYKIREAQLEKVPYMLVIGDKEMENRTVAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M LE+ +N       N 
Sbjct: 612 GDLGPMRLEDFVNRIVEAIKNK 633


>gi|172060451|ref|YP_001808103.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|238689138|sp|B1YP13|SYT_BURA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171992968|gb|ACB63887.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 635

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 150/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQFIAESIAFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G    W   +APF+  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPFQAVVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAHSLTQTLQKQGVRVAGDLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPIEAFVERLQEDLRSFK 635


>gi|187924732|ref|YP_001896374.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|238689588|sp|B2SZG2|SYT_BURPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187715926|gb|ACD17150.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 635

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 149/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M        +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E   +   
Sbjct: 405 SVYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R  + G          LP  + A
Sbjct: 465 VEY---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   + +    +G+M     ++   H G    W   +AP ++ ++NI    +
Sbjct: 495 EYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++
Sbjct: 549 SQAEYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R       M  +  I        +
Sbjct: 609 ARGGVDLGVMPPDTFIERLRQDVQS 633


>gi|126698152|ref|YP_001087049.1| threonyl-tRNA synthetase [Clostridium difficile 630]
 gi|254974173|ref|ZP_05270645.1| threonyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091574|ref|ZP_05321052.1| threonyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255099679|ref|ZP_05328656.1| threonyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255313300|ref|ZP_05354883.1| threonyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515991|ref|ZP_05383667.1| threonyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255649082|ref|ZP_05395984.1| threonyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|306519197|ref|ZP_07405544.1| threonyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|123066930|sp|Q189B8|SYT_CLOD6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115249589|emb|CAJ67406.1| Threonyl-tRNA synthetase [Clostridium difficile]
          Length = 639

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 156/439 (35%), Gaps = 41/439 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 238 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 296 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 354

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L PE  K     +      I+   G +
Sbjct: 355 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFML-PEQIKDEIKGVANLIDGIYKTFGFE 413

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A+ G  +              +   +   I        
Sbjct: 414 Y-NLELSTRPENSMGSDEEWEAAENGLREALEELGLPYTINEGDGAFYGPKIDF------ 466

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                                  K    R  + G I     +       T+ G DG+ H 
Sbjct: 467 ---------------------HLKDCLGRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHR 504

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++   + GK  +W   ++P ++ ++ I        D   ++  
Sbjct: 505 PVMIHRVAFGSIERFIGILIEHYAGKFPVW---LSPTQVKILPI---SDKFMDYANEVKK 558

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 559 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 618

Query: 431 LEEVINYASHRFSNNRPVL 449
           L+E I   S    +   ++
Sbjct: 619 LDEFIASISKEIESRESII 637


>gi|88800311|ref|ZP_01115877.1| threonyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88776888|gb|EAR08097.1| threonyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 643

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 151/441 (34%), Gaps = 44/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            L + +   RD      KL L    + + + G+  W P G      +   +R +Q++ G 
Sbjct: 233 LLFLEEAAKRDHRKIGKKLDLF--HLQEDAPGMVFWHPNGWTMYQVIEQYMRRKQHQHGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW +SG +D +G +M        +     P +      +F   +KSYR
Sbjct: 291 QEIKTPMVVDRSLWEKSGHWDKFGDDMFT-THSESRDNAIKPMNCPCHVQVFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F+  DA+ F  T    +            ++
Sbjct: 350 DLPLRLAEFGSCHRNEASGALHGIMRVRGFVQDDAHIF-CTEGQIQSEVASFIGMLEEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           H  G     ++  + P     S E    A+   ++   +       +P E   +   I  
Sbjct: 409 HDFGFDDYILKLSTRPEQRVGSDEDWDRAEEALSEALNATGKEWAILPGEGAFYGPKIEF 468

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                        K    R  + G I      +S+P  + A + 
Sbjct: 469 TL---------------------------KDSLGRLWQCGTI---QVDFSMPGRLDAQYV 498

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G+    V +    +G+      ++   + G     P  +AP +  ++NI        
Sbjct: 499 DEHGERQTPVMLHRAIVGSFERFLGILIEQYAGAM---PPWLAPVQAMVLNIT---DAQA 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + I   L   G     D   E+IG +     +   P  ++VG K V +  V ++ R 
Sbjct: 553 ETAQNIVKNLENQGFRAKADLRNEKIGFKIREHTIQRIPYLLVVGDKEVENGTVAVRTRE 612

Query: 423 TGIREDMSLEEVINYASHRFS 443
                 M+L E  +      +
Sbjct: 613 GQDLGVMTLAEFSDRIQSDIA 633


>gi|171318442|ref|ZP_02907597.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171096356|gb|EDT41258.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 635

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 150/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQFIAESIAFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G    W   +APF+  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPFQAVVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 VEYAHSLTQTLQKQGVRVAGDLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPIEAFVERLQEDLRSFK 635


>gi|291327048|ref|ZP_06126787.2| threonine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311980|gb|EFE52433.1| threonine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 653

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 152/445 (34%), Gaps = 44/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 243 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKAYN 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 301 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCVKPMNCPGHVQIFNQGLKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E               +
Sbjct: 360 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQILSEVTSCIEMIYDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E    A+        SK       P E   +   I 
Sbjct: 419 YATFGFEKIVVKLSTRPEKRIGTDEMWDRAEEDLANALKSKGIEFEYQPGEGAFYGPKIE 478

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      + LP  ++A++
Sbjct: 479 FTLYDC---------------------------LDRAWQCGTV---QLDFFLPGRLTASY 508

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 509 VGENNERIVPVMIHRAVLGSLERFIGILTEEYAGFFPTW---LAPQQVVVMNIT---DSQ 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++ ++L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 563 ADYVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR 622

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  + + E +        + +
Sbjct: 623 RGKDLGSLDVNEFMTKLLEEIRSRQ 647


>gi|255654593|ref|ZP_05400002.1| threonyl-tRNA synthetase [Clostridium difficile QCD-23m63]
          Length = 639

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 157/439 (35%), Gaps = 41/439 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 238 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 296 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 354

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L PE  K     +      I+   G +
Sbjct: 355 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFML-PEQIKDEIKGVANLIDGIYKTFGFE 413

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S+E    A+ G  +              +   +   I        
Sbjct: 414 Y-NLELSTRPENSMGSNEEWEAAENGLREALEELGLPYTINEGDGAFYGPKIDF------ 466

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                                  K    R  + G I     +       T+ G DG+ H 
Sbjct: 467 ---------------------HLKDCLGRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHR 504

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++   + GK  +W   ++P ++ ++ I        D   ++  
Sbjct: 505 PVMIHRVAFGSIERFIGILIEHYAGKFPVW---LSPTQVKILPI---SDKFMDYANEVKK 558

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 559 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 618

Query: 431 LEEVINYASHRFSNNRPVL 449
           L+E I   S    +   ++
Sbjct: 619 LDEFIASISKEIESRESII 637


>gi|253989346|ref|YP_003040702.1| threonyl-tRNA synthetase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780796|emb|CAQ83958.1| threonyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 642

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 150/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + Y   + +   RD      +L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLNTYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    +W  +G +++Y + M   +  N +     P +      IF   
Sbjct: 286 KEYQYQEVKGPFMMDRVMWERTGHWENYNEHMFTTSSEN-REYCVKPMNCPGHIQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIHREVSNCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     + E    A+                 P E   + 
Sbjct: 404 VYDVYSTFGFEKIVVKLSTRPEKRIGTEEQWNQAEESLAAALQENGVQFEYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPSRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++ G + +    V +    +G++     ++   + G    W   +AP ++ ++NI   
Sbjct: 494 GASYVGENNERKVPVMIHRAVLGSLERFIGILTEEYAGFFPTW---IAPQQVVVMNITDG 550

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++  +  + G     D   E+IG +     L   P  ++ G K V   K+ 
Sbjct: 551 ---QADYVQELAKKFQESGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVESGKIS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R       + + E I        + +
Sbjct: 608 VRTRRGKDLGSIDVNEFIEKLLIEIRSRK 636


>gi|170701132|ref|ZP_02892106.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133954|gb|EDT02308.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 635

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 150/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQFIAESIAFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G    W   +APF+  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPFQAVVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 VEYAHSLTQTLQKQGVRVAGDLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPIEAFVERLQEDLRSFK 635


>gi|255305562|ref|ZP_05349734.1| threonyl-tRNA synthetase [Clostridium difficile ATCC 43255]
          Length = 639

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 156/439 (35%), Gaps = 41/439 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 238 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 296 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 354

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L PE  K     +      I+   G +
Sbjct: 355 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFML-PEQIKDEIKGVANLIDGIYKTFGFE 413

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A+ G  +              +   +   I        
Sbjct: 414 Y-NLELSTRPENSMGSDEEWEAAENGLREALEELGLPYTINEGDGAFYGPKIDF------ 466

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                                  K    R  + G I     +       T+ G DG+ H 
Sbjct: 467 ---------------------HLKDCLGRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHR 504

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++   + GK  +W   ++P ++ ++ I        D   ++  
Sbjct: 505 PVMIHRVAFGSIERFIGILIEHYAGKFPVW---LSPTQVKILPI---SDKFMDYANEVKK 558

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 559 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 618

Query: 431 LEEVINYASHRFSNNRPVL 449
           L+E I   S    +   ++
Sbjct: 619 LDEFIASISKEIESRESII 637


>gi|209516675|ref|ZP_03265528.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209502950|gb|EEA02953.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 635

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 150/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M        +     P +      +F   ++
Sbjct: 287 AGYLEIKTPLIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E   +   
Sbjct: 405 SVYRDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R  + G          LP  + A
Sbjct: 465 VEY---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   + +    +G+M     ++   H G    W   +AP ++ ++NI    +
Sbjct: 495 EYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++
Sbjct: 549 SQAEYAQLLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R       M ++  I        +
Sbjct: 609 ARGGVDLGVMPVDTFIERLRQDVQS 633


>gi|115351412|ref|YP_773251.1| threonyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323391|sp|Q0BG06|SYT_BURCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115281400|gb|ABI86917.1| Ser-tRNA(Thr) hydrolase [Burkholderia ambifaria AMMD]
          Length = 635

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 150/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T E             + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEEQFIAESIAFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E   +   I 
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A +
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G    W   +APF+  ++NI    +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPFQAVVLNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 VEYAHSLTQTLQKQGVRVAGDLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +        + +
Sbjct: 611 GGVDLGVMPIEAFVERLQEDLRSFK 635


>gi|156548890|ref|XP_001606543.1| PREDICTED: similar to ENSANGP00000011343 [Nasonia vitripennis]
          Length = 430

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 134/453 (29%), Positives = 219/453 (48%), Gaps = 38/453 (8%)

Query: 2   RRSKYFLPILQENPR-----DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R SK F P +          D    S++LM+  G+I   + G+Y++LPLG ++L  +  +
Sbjct: 6   RVSKLFQPSIVIPKSSLPKIDLTSKSYQLMINAGIISNVATGMYAFLPLGLRSLQKLINL 65

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           I +E    GA ++ +P L   +LW ++ R      E+  L DR+ K  +  PT+EE +++
Sbjct: 66  IDQEMTAIGAQKILLPVLTQTNLWQQTARLKQAQSELFMLNDRHGKEFLLSPTYEESISN 125

Query: 117 IFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +         + LP   YQ   K+RDE++PR G++RSREF+MKD Y+FDL  + +K +Y 
Sbjct: 126 MISQVGPLQRKQLPLRLYQTSSKWRDEIKPRLGLLRSREFIMKDLYTFDLDADSAKCTYE 185

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++  +Y +IF R+G+    + A++G IGG +SHE+  ++D GE  +   K          
Sbjct: 186 EVSDAYKKIFERIGIPYKKVIADTGIIGGSISHEYHYVSDIGEDVILSCKSCKYEV---- 241

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                     V   K      E   +S   IEVGH F  GTKYS
Sbjct: 242 ------------------------DKVDEPKTRCPKCEEPLISTNSIEVGHTFLLGTKYS 277

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            P+ ATF  ++ K  +++MG YG+G  R++A  IE       I WP  +AP  I +I  K
Sbjct: 278 KPLKATFVDSNCKKQFLEMGCYGLGLTRILATAIEILSTNLEIRWPLELAPHSICVIPPK 337

Query: 356 A--HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
               ++        +Y+ +     DV +DD     IG +F  A   G+P+ +I+G   ++
Sbjct: 338 KGSKEEAKAQLAYDVYSTIQNCNLDVIFDDRVDMTIGKRFIDARKTGYPVVIIIGKSCLA 397

Query: 413 DS-KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D   VE+ +       +++LE V+ +       
Sbjct: 398 DKPLVEVHNVYKASHVNLALENVVEHVKGLLKK 430


>gi|326562407|gb|EGE12726.1| threonyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326569116|gb|EGE19178.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 639

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 160/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R
Sbjct: 226 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHPNGWTIWQVLEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + Q   G +E+  P +    LW +SG +D+YG+ M   A    +     P +      +F
Sbjct: 282 KVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGEMMFTTASEK-RDYAIKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTNAQIRQEALNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I M+  + P     + E   LA+        +          E  
Sbjct: 400 IKLTLDVYKDFGFDHIQMKLSTRPEKRVGADELWDLAEQALADALDNAGLDWELQAGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  + G        ++LP
Sbjct: 460 FYGPKIEFSL---------------------------QDCIGRVWQCGT---LQLDFNLP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A F G  G ++  V +    +G+      ++   + G    W   +AP ++ ++NI
Sbjct: 490 ERLDAEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAW---LAPQQVVVMNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D+   + ++L+  G     D   E+IG +     L   P  +I+G K V   
Sbjct: 547 TDK---QADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       MSL++ I          
Sbjct: 604 TVNVRTRAGENLGSMSLDDFIAVLDKAIEKK 634


>gi|260682273|ref|YP_003213558.1| threonyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685872|ref|YP_003217005.1| threonyl-tRNA synthetase [Clostridium difficile R20291]
 gi|260208436|emb|CBA60998.1| threonyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211888|emb|CBE02332.1| threonyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 670

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 156/439 (35%), Gaps = 41/439 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 269 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 326

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 327 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 385

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L PE  K     +      I+   G +
Sbjct: 386 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFML-PEQIKDEIKGVANLIDGIYKTFGFE 444

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A+ G  +              +   +   I        
Sbjct: 445 Y-NLELSTRPENSMGSDEEWEAAENGLREALEELGLPYTINEGDGAFYGPKIDF------ 497

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                                  K    R  + G I     +       T+ G DG+ H 
Sbjct: 498 ---------------------HLKDCLGRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHR 535

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++   + GK  +W   ++P ++ ++ I        D   ++  
Sbjct: 536 PVMIHRVAFGSIERFIGILIEHYAGKFPVW---LSPTQVKILPI---SDKFMDYANEVKK 589

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 590 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 649

Query: 431 LEEVINYASHRFSNNRPVL 449
           L+E I   S    +   ++
Sbjct: 650 LDEFIASISKEIESRESII 668


>gi|330943371|gb|EGH45740.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 640

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YVLRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|318605898|emb|CBY27396.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 642

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   R+      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRNHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                 P E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G +      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 IGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +  V++       + 
Sbjct: 612 RGKDLGSLDVNVVVDQLLAEIRSR 635


>gi|330951866|gb|EGH52126.1| threonyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 640

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YILRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|37526560|ref|NP_929904.1| threonyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|73919813|sp|Q7N3P6|SYT_PHOLL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|36785991|emb|CAE15043.1| threonyl-tRNA synthetase (threonine--tRNA ligase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 642

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 150/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + Y   + +   RD      +L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLNTYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    +W  +G +++YG+ M   +  N +     P +      IF   
Sbjct: 286 KEYQYQEVKGPFMMDRVMWERTGHWENYGEHMFTTSSEN-REYCVKPMNCPGHIQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +     
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIHREVSSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     + E    A+                 P E   + 
Sbjct: 404 VYDVYSTFGFEKIVVKLSTRPEKRIGTEEQWNQAEESLAAALQENGVQFEYQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +SLP  +
Sbjct: 464 PKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           SA++ G + +    V +    +G++     ++   + G    W   +AP ++ ++NI   
Sbjct: 494 SASYVGENNERKVPVMIHRAVLGSLERFIGILTEEYAGFFPTW---IAPQQVVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++  +L   G     D   E+IG +     L   P  ++ G K V   KV 
Sbjct: 549 -DSQADYVQELVKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVESGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + +   I        + 
Sbjct: 608 VRTRRGKDLGSIDVNGFIEKLLIEIRSR 635


>gi|289673298|ref|ZP_06494188.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
 gi|330898079|gb|EGH29498.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 640

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YILRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|149926877|ref|ZP_01915136.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824429|gb|EDM83647.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 635

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    +   + G+  W P G      V   +R+     G
Sbjct: 231 YLHRLEEAEKRDHRKLGKQLDLF--HMQDEAPGLVFWHPKGWALWQQVEQYMRKVYVDGG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M        +     P +     ++F+S ++SY
Sbjct: 289 YQEIRCPQILDRKLWEKSGHWDNYKENMFTTESEK-RDYALKPMNCPGHIEVFKSDLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F  T +  +    K     +++
Sbjct: 348 RDLPMRYGEFGACHRNESSGALHGIMRVRGFTQDDGHIF-CTEDQVQEEVTKFNQVAMQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+        +       +P E   +   I 
Sbjct: 407 YADFGFNEINVKLALRPEARLGTDETWDKAEDSLRAALKACGVQWTELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      + LP  + A +
Sbjct: 467 Y---------------------------HMKDSIGRSWQCGTI---QVDFQLPGRLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++  +H G   +W   ++P ++ +  I    +  
Sbjct: 497 VAEDNSRRVPVMLHRAIVGSMERFIGILIENHAGAMPVW---LSPVQVVVATIT---EAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +   L K G  V  D   E+I  +     +   P   ++G      ++V ++ R
Sbjct: 551 NEYAHNVVQMLKKQGIRVEADLRNEKINRKIREHTMQKTPYIAVIGDAERDANQVAVRLR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +++ I       ++ 
Sbjct: 611 GNENLGSLPVDDFIQRLLGEINSR 634


>gi|254515029|ref|ZP_05127090.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219677272|gb|EED33637.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 645

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      KL L      + + G+  W P G      +   +RE+Q   
Sbjct: 230 QYLRRIEEAEKRDHRKIGKKLDLF--HTQEEAPGMVFWHPQGWTIYQVIEQYMREQQRAQ 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P L    LW +SG  D +G +M  L   +++     P +      +F   ++S
Sbjct: 288 DYQEIKTPQLVDMSLWEKSGHADKFGDDMFMLTA-DEREFAVKPMNCPCHVQVFNQGLRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F   D + F  T E  +   +        
Sbjct: 347 YRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDGHIF-CTEEQIQPEVSTFIDFLHA 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   +  R  + P     + E    A+        ++      +P E   +   I
Sbjct: 406 VYADFGFDEVIYRLSTRPAQRVGTDEDWDRAEKALADALDAQGLDWQELPGEGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
             +                            K    R  ++G I      +S+P  + A 
Sbjct: 466 EFSL---------------------------KDCIGRVWQMGTI---QVDFSMPGRLDAQ 495

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V +    +G+      ++  + +G   +W   +AP +  +INI    + 
Sbjct: 496 YVAEDGSRKTPVMLHRAILGSFERFIGILIENFEGSFPVW---LAPKQAVVINIT---EK 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +   L   G  VF D   E+IG +     +   P  V+VG K V    V ++ 
Sbjct: 550 QDEYVRFVEDSLKNKGFRVFSDLRNEKIGFKIREHTIQRVPYLVVVGEKEVEAKTVAVRS 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R       MSLE          +    V
Sbjct: 610 RNGEDLGTMSLEAFTEILDQDVARRGRV 637


>gi|326572997|gb|EGE22976.1| threonyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 639

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 160/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R
Sbjct: 226 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHPNGWTIWQVLEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + Q   G +E+  P +    LW +SG +D+YG+ M   A    +     P +      +F
Sbjct: 282 KVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGEMMFTTASEK-RDYAIKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTNAQIRQEALNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I M+  + P     + E   LA+        +          E  
Sbjct: 400 IKLTLDVYKDFGFDHIQMKLSTRPEKRVGADELWDLAEQALADALDNAGLDWELQAGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  + G        ++LP
Sbjct: 460 FYGPKIEFSL---------------------------QDCIGRVWQCGT---LQLDFNLP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A F G  G ++  V +    +G+      ++   + G    W   +AP ++ ++NI
Sbjct: 490 ERLDAEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAW---LAPQQVVVMNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D+   + ++L+  G     D   E+IG +     L   P  +I+G K V   
Sbjct: 547 TDK---QADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       MSL++ I          
Sbjct: 604 TVNVRTRTGDNLGSMSLDDFIAVLDKAIEKK 634


>gi|296449369|ref|ZP_06891150.1| threonine--tRNA ligase [Clostridium difficile NAP08]
 gi|296880697|ref|ZP_06904650.1| threonine--tRNA ligase [Clostridium difficile NAP07]
 gi|296261715|gb|EFH08529.1| threonine--tRNA ligase [Clostridium difficile NAP08]
 gi|296428315|gb|EFH14209.1| threonine--tRNA ligase [Clostridium difficile NAP07]
          Length = 670

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 157/439 (35%), Gaps = 41/439 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 269 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 326

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 327 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 385

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L PE  K     +      I+   G +
Sbjct: 386 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFML-PEQIKDEIKGVANLIDGIYKTFGFE 444

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S+E    A+ G  +              +   +   I        
Sbjct: 445 Y-NLELSTRPENSMGSNEEWEAAENGLREALEELGLPYTINEGDGAFYGPKIDF------ 497

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                                  K    R  + G I     +       T+ G DG+ H 
Sbjct: 498 ---------------------HLKDCLGRTWQCGTI-QLDMQLPRQFDNTYIGQDGEKHR 535

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++   + GK  +W   ++P ++ ++ I        D   ++  
Sbjct: 536 PVMIHRVAFGSIERFIGILIEHYAGKFPVW---LSPTQVKILPI---SDKFMDYANEVKK 589

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 590 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 649

Query: 431 LEEVINYASHRFSNNRPVL 449
           L+E I   S    +   ++
Sbjct: 650 LDEFIASISKEIESRESII 668


>gi|9955215|pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With The Ligand Threonine
 gi|9955216|pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With The Ligand Threonine
 gi|9955217|pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955218|pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955219|pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955220|pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|12084202|pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase Complexed With A Seryl Adenylate Analog
 gi|12084203|pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase Complexed With A Seryl Adenylate Analog
 gi|20664135|pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664136|pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664137|pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664138|pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664139|pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664140|pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664141|pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664142|pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
          Length = 401

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 147/434 (33%), Gaps = 44/434 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +L L    + + + G+  W   G      +   +R +       E+  P + 
Sbjct: 1   RDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMM 58

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
              LW ++G +D+Y   M   +  N +     P +      IF   +KSYR+LP    + 
Sbjct: 59  DRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF 117

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R+E      G+MR R F   DA+ F  T E  +   N        ++   G + I 
Sbjct: 118 GSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCIRLVYDMYSTFGFEKIV 176

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           ++  + P     S E    A+          +        E   +   I           
Sbjct: 177 VKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDC---- 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-Y 311
                                    R  + G +      +SLP  +SA++ G D +    
Sbjct: 233 -----------------------LDRAWQCGTV---QLDFSLPSRLSASYVGEDNERKVP 266

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+M     ++     G    W   +AP ++ ++NI        +   ++  +
Sbjct: 267 VMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVIMNIT---DSQSEYVNELTQK 320

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R       M +
Sbjct: 321 LSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDV 380

Query: 432 EEVINYASHRFSNN 445
            EVI        + 
Sbjct: 381 NEVIEKLQQEIRSR 394


>gi|28869575|ref|NP_792194.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970495|ref|ZP_03398622.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301384174|ref|ZP_07232592.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302132643|ref|ZP_07258633.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|38258312|sp|Q883H9|SYT_PSESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28852817|gb|AAO55889.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924666|gb|EEB58234.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|330876789|gb|EGH10938.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331016139|gb|EGH96195.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 640

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTQSES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|117621181|ref|YP_856850.1| threonyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166223316|sp|A0KKP9|SYT_AERHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117562588|gb|ABK39536.1| threonyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 151/449 (33%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    + + + G+  W   G      +   IR +
Sbjct: 227 KQLKSYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFIRGK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG ++ Y + M      N +     P +      IF  
Sbjct: 285 LKEYDYQEVKGPFMMDRVLWERSGHWEKYAQAMFTTQSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIMEEVSACIR 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G ++I ++  + P     S E              +       +     D 
Sbjct: 403 MVYDVYGTFGFENIVVKLSTRPEQRIGSDEAW--------DRAEAALAEALVLNGLKYDL 454

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                             A      E              R  + G +      ++LP  
Sbjct: 455 -------------QPGEGAFYGPKIEFTL------HDCLDRAWQCGTV---QLDFALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G D + H  V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 493 LGATYVGEDNERHVPVMIHRAILGSLERFIGILTEEYAGLFPTW---LAPTQAVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   K+   L+  G     D   E+IG +     L   P  ++ G K V   K+
Sbjct: 550 N---QADYAVKVAKALNDAGLRAKADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGKI 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R         +EE+I   +      
Sbjct: 607 AVRTRKGADLGTYPVEELIALLTQEVQTR 635


>gi|218709221|ref|YP_002416842.1| threonyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|218322240|emb|CAV18357.1| Threonyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 655

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD       L L    + Q + G+  W   G      +   IR++      
Sbjct: 247 LVRLEEAAKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDY 304

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +KSYR
Sbjct: 305 QEVKGPLMMDRVLWERSGHWDKYAEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSYR 363

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 364 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVF-CTEDQVQQEVKACIEMVYDTY 422

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    A+    Q   + +        E   +   I  
Sbjct: 423 TTFGFENIVVKLSTRPEQRVGSDEMWDRAEADLKQALEAMEIAYEIQEGEGAFYGPKIEF 482

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 483 TL---------------------------HDCLDRAWQCGTV---QLDFALPERLGATYV 512

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H  V +    +G++     ++   + G    W   +AP +  ++ I        
Sbjct: 513 GEDNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAIVMGITDKQS--- 566

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 567 EYVQEIAKKLQKSGFRVKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRK 626

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   +++ I+Y     S+ +
Sbjct: 627 GKDLGKFKVDDFISYIQAEVSSRK 650


>gi|295115128|emb|CBL35975.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SM4/1]
          Length = 605

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 159/447 (35%), Gaps = 48/447 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + ++ +++E   RD      +L L   M+H    G   +LP G +  + +    RE   +
Sbjct: 191 EAYITMMEEAKKRDHRKLGKELGLF--MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKK 248

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + +  LW  SG +D Y   M      +++     P +      ++ S  +
Sbjct: 249 AGYVEISTPIILNRSLWETSGHWDHYKNNMYT-TVIDEEDYAIKPMNCPGGVLVYASEPR 307

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  K     +     
Sbjct: 308 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIKDEIKGVATLIN 366

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K   +   + P     S E   LA  G                 +   +   
Sbjct: 367 EVYTLFGFKY-HVELSTRPEDSMGSDEDWELATEGLRSALDELGLPYVVNEGDGAFYGPK 425

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
           I                               +    R  + G I   F    ++     
Sbjct: 426 IDF---------------------------HLEDCIGRTWQCGTIQLDFQLPQRF----E 454

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I    
Sbjct: 455 LEYTGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---S 508

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+Y  LS+ G     D   E+IG +   A     P  ++VG K   +  V +
Sbjct: 509 DKYADYAAKVYESLSEAGIRAEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSV 568

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     SLE  I       ++ 
Sbjct: 569 RSRFAGDEGASSLESFIEKIQKEIASK 595


>gi|330967298|gb|EGH67558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 640

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTQSES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|153814564|ref|ZP_01967232.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|317501270|ref|ZP_07959474.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145848058|gb|EDK24976.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|316897337|gb|EFV19404.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 641

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 161/449 (35%), Gaps = 47/449 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L   M+ +   G   +LP G    + +    RE   
Sbjct: 227 LEEYLTMIEEAKKRDHRKLGKELGLF--MMREEGPGFPFFLPNGMVLKNTLLDYWREIHR 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G +E++ P + S  LW  SG +D Y + M      +++     P +      ++ S  
Sbjct: 285 RAGYVEINTPIMLSRHLWETSGHWDHYKENMYT-TVVDEEDFAIKPMNCPGGILVYESEP 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  K     +    
Sbjct: 344 RSYRDLPIRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIKDEIKGVVKLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P     S E   +A                          D
Sbjct: 403 DEVYSLFGFKY-HVELSTRPDDSMGSDEDWEMATDALRSALD-----------------D 444

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
           I     + E   A Y    D H E              R  + G I   F    ++    
Sbjct: 445 IGLPYIVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF---- 490

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I   
Sbjct: 491 ELEYTGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI--- 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+   L + G     D   E+IG +   A +   P  ++VG+K   + KV 
Sbjct: 545 SDKYLDYAGKVLEDLKEAGIRAEIDSRAEKIGYKIREAQMKKIPYMLVVGAKEEEEGKVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R  G      LEE I       +  +
Sbjct: 605 VRSRFAGDEGQCGLEEFIEQIKEEVAAKK 633


>gi|225181661|ref|ZP_03735101.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167642|gb|EEG76453.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 636

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 159/450 (35%), Gaps = 44/450 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +RS+   +L  L+E   RD      +L L +  I     G     P G    + +    R
Sbjct: 225 KRSQLDEYLHRLEEAKKRDHRKLGRELDLFS--IQDEGPGFPLLHPRGMIIRNALEEFWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + +  LW  SG +D Y + M      +++     P +      ++
Sbjct: 283 EEHRKAGYDEIKTPIILNRVLWERSGHWDHYQENMY-FTKIDEQDFSVKPMNCPGSMLVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYR+LP    ++ L  R EL     G+MR R F   DA+ F L P   K    K+
Sbjct: 342 KTKMHSYRDLPVRMGELGLVHRHELSGTLHGMMRVRAFTQDDAHIFML-PSQIKEEVAKV 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R+++  G     +   + P     S E   +A     +V   +         +  
Sbjct: 401 IELTDRVYNVFGFDY-HVELSTKPEKAMGSDEMWDVATNALREVLEERGMQFVINEGDGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               +    R  + G I     +    
Sbjct: 460 FYGPKIDF---------------------------HLQDSIGRTWQCGTI-QLDFQMPEK 491

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG+ H    +     G++    AV+     G   +W   +AP ++ ++ I  
Sbjct: 492 FDIHYVGEDGQKHRPAVIHRVIYGSIERFMAVLIEHFAGAFPVW---LAPQQVVVLPITD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    + +  R  + G     D   E+IG +   A +   P  ++VG K +   +V
Sbjct: 549 K---HHQYAQTLVERFREAGVRAEADVRNEKIGYKIREAQVQKVPYMLVVGDKEMEAGQV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R  G    M ++  +   +   +N +
Sbjct: 606 SVRERAAGDVGSMEVDAFLAKITAEIANKQ 635


>gi|212711437|ref|ZP_03319565.1| hypothetical protein PROVALCAL_02510 [Providencia alcalifaciens DSM
           30120]
 gi|212685893|gb|EEB45421.1| hypothetical protein PROVALCAL_02510 [Providencia alcalifaciens DSM
           30120]
          Length = 653

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 150/445 (33%), Gaps = 44/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 243 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKSYN 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 301 YQEVKGPFMMDRVLWERTGHWENYKDAMFTTSSEN-REYCVKPMNCPGHVQIFNQGLKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +               +
Sbjct: 360 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILGEVTSCIEMIYDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + +    A+        SK       P E   +   I 
Sbjct: 419 YSTFGFEKIVVKLSTRPEKRIGTDDMWDTAEADLANALKSKGIEFEYQPGEGAFYGPKIE 478

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      + LP  ++A++
Sbjct: 479 FTLYDC---------------------------LDRAWQCGTV---QLDFFLPGRLNASY 508

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 509 VGENNERITPVMIHRAVLGSLERFIGILTEEYAGFFPTW---LAPQQVVVMNIT---DSQ 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++ ++L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 563 ADYVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVESGKVSVRTR 622

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  + + E          + +
Sbjct: 623 RGKDLGSLDVNEFTTKLLEEIRSRQ 647


>gi|93007241|ref|YP_581678.1| threonyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|123264359|sp|Q1Q809|SYT_PSYCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|92394919|gb|ABE76194.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Psychrobacter
           cryohalolentis K5]
          Length = 644

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 152/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K ++  ++E    AE   H+ + +      + + + G+  W   G      +   +R+ Q
Sbjct: 229 KAYIQRIEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHANGWTIYQVLEQYMRKVQ 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P +    LW  SG + +Y   M   +  N +     P +      +F   
Sbjct: 285 HDNGYEEIKTPQIVDRSLWERSGHWGNYATNMFTTSSEN-RDYAVKPMNCPCHVQVFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +         
Sbjct: 344 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTQSQIQQEVADFIKL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L ++   G   I M+  + P     S E    A+        S       +P E   + 
Sbjct: 403 TLAVYEDFGFDKIIMKLSTRPEKRVGSDESWDFAEKALADALDSSGLDWAYLPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I  +                            K    R  + G I          + A
Sbjct: 463 PKIEFSL---------------------------KDSLGRVWQCGTI-QVDPNMPERLDA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F      ++  + +    +G+      ++  ++ G   +W   +AP ++ ++NI     
Sbjct: 495 EFVNEQNEREVPIMLHRAILGSFERFIGILIENYAGWMPVW---LAPQQVVVMNITDK-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              DACE +   L K G     D   E+IG +     L   P  +++G K V    + ++
Sbjct: 550 -QADACENVVNELKKAGLRAISDLRNEKIGFKIREKTLERIPYMLVLGDKEVESGSINVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       MS+ E I       +  
Sbjct: 609 TREGENLGVMSVAEFITLVEAAVAEK 634


>gi|167766936|ref|ZP_02438989.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
 gi|167710911|gb|EDS21490.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
          Length = 645

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 161/445 (36%), Gaps = 47/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 234 YLTMMEEARKRDHRKLGKELGLF--MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +D+     P +      ++ S  +SY
Sbjct: 292 YVEISTPIMLSRHLWETSGHWDHYKENMYT-TVIDDQDFAIKPMNCPGGVLVYDSEPRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     ++
Sbjct: 351 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E   LA                          D+  
Sbjct: 410 YNLFGFKY-HVELSTRPDDSMGSDEDWELATDSLRAALD-----------------DLGL 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              + E   A Y    D H E              R  + G I   F    ++       
Sbjct: 452 DYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF----DLH 497

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  + +     G++     ++     G    W   +AP ++ +I I      
Sbjct: 498 YTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVEVIPI---SDK 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+   L   G     D   E++G +   A L   P  ++VG K   +  V ++ 
Sbjct: 552 HLDYANKVLDTLKAAGIRADIDTRAEKMGYKIREAQLQKIPYMLVVGGKEEENEAVSVRS 611

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M L++ ++      +N 
Sbjct: 612 RFKGDEGQMKLDDFLDAIKEEIANR 636


>gi|237747667|ref|ZP_04578147.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229379029|gb|EEO29120.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 635

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 152/447 (34%), Gaps = 49/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R          + G+  W   G      V   +R     
Sbjct: 231 YLHMLEE----AEKRDHRRLGRSLDLFHFQDEAPGLIFWHAKGWTIWQQVEQYMRRVYQE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +D+Y + M      N +     P +      I+RS++ 
Sbjct: 287 NGYQEVKGPQILDRSLWEKSGHWDNYKENMFTTESEN-RIYALKPMNCPGHVQIYRSNLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F  T +              
Sbjct: 346 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEDQILDECVAFTDLLK 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P     S E    A+    Q            P +   +   
Sbjct: 405 KVYQDFGFTDIIYKIATRPEKRVGSDEAWDKAENALIQSLERSGCSYELSPGDGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--SA 300
           I                               K    R  + G I      +S+PM   A
Sbjct: 465 IEYTL---------------------------KDAIGRMWQCGTI---QVDFSMPMRLGA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D      V +    +G++     ++  +H G   +W   +AP   +++NI     
Sbjct: 495 EYVAEDNTRKIPVMIHRAILGSLERFIGILIENHAGAMPLW---LAPVHATVLNI---SD 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   + K G     D   E+I  +     +   P  ++VG K  + + V ++
Sbjct: 549 SQAEYAQSVVQTMKKAGFRAEVDLRNEKITYKIRDHSVNKVPYLIVVGDKEKNANTVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R       M++EE++    +   + +
Sbjct: 609 ARGGVDLGVMTVEELMARMENEIQSKQ 635


>gi|10438145|dbj|BAB15178.1| unnamed protein product [Homo sapiens]
          Length = 402

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 141/423 (33%), Positives = 221/423 (52%), Gaps = 35/423 (8%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ML+ G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  A+LW  + R
Sbjct: 1   MLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVNMPSLSPAELWQATNR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELR 144
           +D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LPF  YQ+  KFRDE R
Sbjct: 61  WDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQVTRKFRDEPR 120

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LGL  + ++A+ G IGG
Sbjct: 121 PRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLGLPFVKVQADVGTIGG 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +SHEF +  D GE ++            S N +  D+  +N    Q             
Sbjct: 181 TVSHEFQLPVDIGEDRLAICPRCSF----SANMETLDLSQMNCPACQGP----------- 225

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                          +GIEVGH FY GTKYS   +A F    GK    +MG YG+G  R+
Sbjct: 226 -----------LTKTKGIEVGHTFYLGTKYSSIFNAQFTNVCGKPTLAEMGCYGLGVTRI 274

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKV----GCD 378
           +AA IE       + WP  +AP++  LI  K    +Q   +   ++Y  +++       +
Sbjct: 275 LAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQLYDHITEAVPQLHGE 334

Query: 379 VFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEVIN 436
           V  DD     IG++   A+  G+P  +I G + + D    E+  + TG    ++ + V++
Sbjct: 335 VLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQNTGEVAFLTKDGVMD 394

Query: 437 YAS 439
             +
Sbjct: 395 LLT 397


>gi|289623636|ref|ZP_06456590.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647146|ref|ZP_06478489.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298486701|ref|ZP_07004758.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158784|gb|EFH99847.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330867695|gb|EGH02404.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 640

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|187477891|ref|YP_785915.1| threonyl-tRNA synthetase [Bordetella avium 197N]
 gi|123738749|sp|Q2L2M5|SYT_BORA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115422477|emb|CAJ49002.1| threonyl-tRNA synthetase [Bordetella avium 197N]
          Length = 650

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 150/447 (33%), Gaps = 43/447 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R            G+  W P G      V   +R     
Sbjct: 236 YLHMLEE----AERRDHRKIGRDLDLFHFQDEGPGLIFWHPKGWTLWQQVEQYMRAVYRD 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D+Y + M      N +     P +      IF + + 
Sbjct: 292 NGYQEVKAPQILDLSLWKKTGHWDNYRENMFTTESEN-RVYGLKPMNCPGHVQIFNAGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F  T +  +           
Sbjct: 351 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEDQLQDECADFTALLQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   +  +  + P     S E    A+T   +            P E   +   
Sbjct: 410 KVYRDFGFTEVLYKVATRPEKRIGSDEIWDKAETALMESLRRTGCEFEISPGEGAFYGPK 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                       L D++  + +     ++       G +Y        
Sbjct: 470 IEY--------------------TLKDAIGRHWQCGTIQVDFSMPVRLGAEY-------V 502

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D +   V +    +G++     ++  +H G     P  +AP +  +  I    +   
Sbjct: 503 DQNDQRRAPVMLHRAILGSLERFIGMLIENHAGAM---PPWLAPVQAVVCCI---SEPSA 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   KI   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++   
Sbjct: 557 EYAAKITQSLKKQGFRVQADLRGEKITRKIREHSLQKVPYILVVGDKEAQNGTVAVRGLG 616

Query: 423 TGIREDMSLEEVINYASHRFSNNRPVL 449
                 +  ++ +   +   ++ R V+
Sbjct: 617 GLDLGAIPFDDFVARLNEDVASRRNVV 643


>gi|303242609|ref|ZP_07329085.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302589866|gb|EFL59638.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 635

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 156/445 (35%), Gaps = 47/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I++   G   ++P G    + +    REE    G
Sbjct: 231 YLFRLEEAKKRDHRKLGKELDLFD--IYEEGPGFPFFMPKGMMLRNLLENYWREEHKARG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + DLW  SG +D Y + M      ++      P +      +++  + SY
Sbjct: 289 YQEIRTPIILNEDLWHRSGHWDHYKENMY-FTKIDEGDYAIKPMNCPGGMLVYKRKLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  K     +       
Sbjct: 348 RDLPQRMAELGLVHRHELSGALHGLMRVRCFTQDDAHIF-MTPEQIKDEVLGVINLIDDF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E   +A         ++         +   +   I 
Sbjct: 407 YNVFGFKY-HVELSTRPEDSMGSDEQWEMATNALRDALDARKMNYKVNEGDGAFYGPKID 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
                                         +    R  + G I   F    ++       
Sbjct: 466 F---------------------------HLEDSIGRTWQCGTIQLDFQMPQRF----DLN 494

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  V +     G++    A++     G    W   ++P ++ ++ +      
Sbjct: 495 YVGADGEKHRPVMIHRVVFGSIERFIAILTEHFAGAFPTW---LSPVQVKILPLIDK--- 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++ A L   G  V  D   E+IG +   A L   P  +++G K + +  V ++ 
Sbjct: 549 HHQFAGEVKAALEAKGVRVEVDLRNEKIGYKIREAQLEKTPYMLVIGDKELENGAVAVRS 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M+L + +N       + 
Sbjct: 609 RKDGDLGSMALNDFVNKIVEEVESK 633


>gi|330989241|gb|EGH87344.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 640

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|320324302|gb|EFW80381.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328576|gb|EFW84578.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330885566|gb|EGH19715.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 640

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|91784428|ref|YP_559634.1| threonyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123358618|sp|Q13WF7|SYT_BURXL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91688382|gb|ABE31582.1| Ser-tRNA(Thr) hydrolase [Burkholderia xenovorans LB400]
          Length = 635

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 149/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M        +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     + E    A+ G  +   +       +P E   +   
Sbjct: 405 SVYKDFGFDHVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R  + G          LP  + A
Sbjct: 465 VEY---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   + +    +G+M     ++   H G    W   +AP ++ ++NI    +
Sbjct: 495 EYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++
Sbjct: 549 SQTEYAQSLAQSLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R       M L+  I        +
Sbjct: 609 ARGGVDLGVMPLDTFIERLRQDVQS 633


>gi|71735831|ref|YP_274354.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|123747652|sp|Q48JS3|SYT_PSE14 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71556384|gb|AAZ35595.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 640

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWERAETALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|145298933|ref|YP_001141774.1| threonyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166223317|sp|A4SMA4|SYT_AERS4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|142851705|gb|ABO90026.1| threonyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 642

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 151/449 (33%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    + + + G+  W   G      +   IR +
Sbjct: 227 KQLKGYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFIRGK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG ++ Y + M      N +     P +      IF  
Sbjct: 285 LKEYDYQEVKGPFMMDRVLWERSGHWEKYAQAMFTTQSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIMEEVSACIR 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G ++I ++  + P     S E              +       +     D 
Sbjct: 403 MVYDVYGTFGFENIVVKLSTRPEQRIGSDEAW--------DRAEAALAEALVLNGLKYDL 454

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                             A      E              R  + G +      ++LP  
Sbjct: 455 -------------QPGEGAFYGPKIEFTL------HDCLDRAWQCGTV---QLDFALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G D + H  V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 493 LGATYVGEDNERHVPVMIHRAILGSLERFIGILTEEYAGLFPTW---LAPTQAVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   K+   L+  G     D   E+IG +     L   P  ++ G K V   K+
Sbjct: 550 N---QADYAVKVAKALNDAGLRAKADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGKI 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R         +EE++   +      
Sbjct: 607 AVRTRKGADLGTYPVEELVALLTQEVQTR 635


>gi|209695239|ref|YP_002263168.1| threonyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|208009191|emb|CAQ79445.1| threonyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 642

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 153/443 (34%), Gaps = 44/443 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD       L L    + Q + G+  W   G      +   +RE+      
Sbjct: 233 LIRLEEAAKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFVREKLTEYDY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMERVLWERSGHWDKYAEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 350 DLPLRMAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEAQVQDEVKSCIEMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    A+  + Q+      + + I      F      
Sbjct: 409 TTFGFENIVVKLSTRPEQRVGSDEMWDKAE-ADLQLALESMNIAYEIQEGEGAFYGPKIE 467

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
            ++ +                             R  + G +      ++LP  + AT+ 
Sbjct: 468 FTLHDC--------------------------LDRAWQCGTV---QLDFALPERLGATYV 498

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H  V +    +G++     ++   + G    W   +AP +  ++ I        
Sbjct: 499 GEDNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTW---LAPEQAIVMGITDK---QA 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 553 DYVQEIAKKLQKNGFRVKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRK 612

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                   +++ + +     S  
Sbjct: 613 GKDLGKFKIDDFVAFLQQEVSTR 635


>gi|82701621|ref|YP_411187.1| threonyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|123727233|sp|Q2YBS6|SYT_NITMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82409686|gb|ABB73795.1| Ser-tRNA(Thr) hydrolase [Nitrosospira multiformis ATCC 25196]
          Length = 638

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 160/444 (36%), Gaps = 45/444 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L    + + + G+  W P G      V   +R+     G
Sbjct: 231 YLRRLEEAEKRDHRKLGKQLGLF--HLQEEAPGMVFWHPKGWVVWQQVEQYMRDIFRNNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P++    LW  SG ++++ + M  +    D+     P +      +F+  +KSY
Sbjct: 289 YLEIRTPSVLDKGLWERSGHWENFRENMF-VTQAEDREFSVKPMNCPGHVQVFKQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T    +    +      ++
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGALHGIMRVRAFTQDDAHIF-CTESQVQDEAVQFIDLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G   I ++  + P     S E    A+         K+ +    P E   +   I 
Sbjct: 407 YNDFGFNDILVKLSTRPAKRVGSEEQWDKAEEALRSALNHKNLIWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        +S+P  + A F
Sbjct: 467 FSL---------------------------KDSIGRIWQCGT---LQLDFSMPERLGAEF 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D      V +    +G++     ++  +H G   +W   ++P    ++NI    +  
Sbjct: 497 VAEDNSRQIPVMLHRAILGSLERFIGILIENHAGALPLW---LSPDHAVVLNI---SEGQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G   + D   E+I  +     L   P Q+IVG K V+  +V ++ R
Sbjct: 551 ADYAREVTEELRRAGIRAYADLRNEKITYKIREHSLQKLPYQIIVGDKEVAAQRVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M+L  +++         
Sbjct: 611 SGSDLGQMTLPALVDRLKEEIRTR 634


>gi|237808486|ref|YP_002892926.1| threonyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259516783|sp|C4LFH3|SYT_TOLAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237500747|gb|ACQ93340.1| threonyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 642

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   IR++     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWIIFRELETFIRQKLREYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YEEVKGPFMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F       +   +         
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCA-ENQIQDEVSACIRMVYDT 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K+I ++  + P     S E    A+   +      +      P E   +   I 
Sbjct: 408 YSTFGFKNIAVKLSTRPEKRIGSDEMWDRAEEALSAALKHNNIEFDLQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      ++LP  + AT+
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFALPGRLGATY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D   H  V +    +G+M     ++     G   +W   +AP +  ++NI  +    
Sbjct: 498 VGEDNDRHVPVMIHRAILGSMERFIGILTEETAGYFPLW---LAPLQAVVMNITDN---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++   L++ G     D   E+IG +     L   P  ++ G K +   ++ ++ R
Sbjct: 552 ADYVKEVVNTLNESGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDKEMEAGEIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                    + +++       S  
Sbjct: 612 RGVDLGKFKVTDLVEQLRKEISTR 635


>gi|86147528|ref|ZP_01065839.1| threonyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85834696|gb|EAQ52843.1| threonyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 642

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD       L L    + Q + G+  W   G      +   IR++      
Sbjct: 234 LVRLEEAAKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYAEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVF-CTEDQVQQEVKACIEMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E    A+    Q   + +        E   +   I  
Sbjct: 410 TTFGFENIVVKLSTRPEQRVGSDEMWDRAEADLKQALEAMEIAYEIQEGEGAFYGPKIEF 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      ++LP  + AT+ 
Sbjct: 470 TL---------------------------HDCLDRAWQCGTV---QLDFALPERLGATYV 499

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H  V +    +G++     ++   + G    W   +AP +  ++ I        
Sbjct: 500 GEDNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAIVMGITDKQS--- 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ ++ R 
Sbjct: 554 EYVQEIAKKLQKSGFRVKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRK 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                   +++ I+Y     S+ +
Sbjct: 614 GKDLGKFKVDDFISYIQAEVSSRK 637


>gi|227498537|ref|ZP_03928681.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903993|gb|EEH89911.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 636

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 160/448 (35%), Gaps = 48/448 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L   M+  +  G   +LP G    + +    RE   +
Sbjct: 231 EAYLHMLEEAEKRDHRKLGKQLGLF--MLSDYGPGFPFFLPNGMILRNELINYWREVHRK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+S P + +  LW  SG +D Y + M      + +     P +      ++ S   
Sbjct: 289 YNYYEVSTPMIMNRQLWETSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGGMLVYDSEPH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R EL     G+ R R F   DA+ F + P   +    +    + 
Sbjct: 348 SYRDLPLRVGELGLVHRHELSGALHGLFRVRCFTQDDAHIFMM-PNQIEDVIQETIRLFD 406

Query: 183 RIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++   GL        + P   +G D + E    A                         
Sbjct: 407 EVYATFGLTY-HAELSTRPDNSMGDDATWEMTTNA--------------------LRKAM 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           DD      + E   A Y    D H           K    R  + G I           +
Sbjct: 446 DDFGLKYVVNEGDGAFYGPKIDFH----------LKDSIGRTWQCGTI-QLDMLLPEKFN 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ G DG+ H  V +     G++     ++  ++ G    W   +AP ++ ++ I    
Sbjct: 495 LTYTGEDGQKHRPVMIHRVVYGSIERFIGILIENYAGAFPAW---LAPEQVRVMPITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  + +  ++  +G     DD  E+IG +     +   P  ++VG K  ++  V +
Sbjct: 551 --FNEYAKSVVDKMEALGIRAHLDDRNEKIGYKIREGQVKKVPYMLVVGEKEATNGTVSV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R  G    M+++E I          +
Sbjct: 609 RSRSEGEMGAMAVDEFIAKLQKEIKEKK 636


>gi|257486172|ref|ZP_05640213.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010502|gb|EGH90558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 640

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|331089982|ref|ZP_08338872.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402896|gb|EGG82462.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 641

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 161/449 (35%), Gaps = 47/449 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L   M+ +   G   +LP G    + +    RE   
Sbjct: 227 LEEYLTMIEEAKKRDHRKLGKELGLF--MMREEGPGFPFFLPNGMVLKNTLLDYWREIHR 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G +E++ P + S  LW  SG +D Y + M      +++     P +      ++ S  
Sbjct: 285 RAGYVEINTPIMLSRHLWETSGHWDHYKENMYT-TVVDEEDFAIKPMNCPGGILVYESEP 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  K     +    
Sbjct: 344 RSYRDLPIRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIKDEIKGVVKLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P     S E   +A                          D
Sbjct: 403 DEVYSLFGFKY-HVELSTRPDDSMGSDEDWEMATDALRSALD-----------------D 444

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
           I     + E   A Y    D H E              R  + G I   F    ++    
Sbjct: 445 IGLPYIVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF---- 490

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I   
Sbjct: 491 ELEYTGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI--- 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+   L + G     D   E+IG +   A +   P  ++VG+K   + KV 
Sbjct: 545 SDKYLDYAGKVLEDLKEAGIRAEIDSRAEKIGYKIREAQMKKIPYMLVVGAKEEEEGKVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R  G      LEE I       +  +
Sbjct: 605 VRSRFVGDEGQCGLEEFIEQIKEEVAAKK 633


>gi|159903594|ref|YP_001550938.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|238687108|sp|A9BAX2|SYT_PROM4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|159888770|gb|ABX08984.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 638

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 159/444 (35%), Gaps = 45/444 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      K+ L      + + G+  W P G      +   IR+  N 
Sbjct: 229 KAYINRLEEAEKRDHRKIGKKMDLF--HTQEEAPGMVFWHPNGWSIYQVLEKYIRDVLNN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P      LW +SG +D +  +M      N +     P +      IF   +K
Sbjct: 287 NYYQEVKTPQAVDRSLWEKSGHWDKFKDDMFTTTSEN-REYAIKPMNCPCHIQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +       
Sbjct: 346 SYRDLPIRLAEFGSCHRNEPSGALHGLMRVRNFVQDDAHIF-CTEAQVQSEVSNFIDLVF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++  + P     S      ++   ++   SK      +P E   +   
Sbjct: 405 EVYKSFGFNEIIIKLSTRPKKRVGSEFIWDKSEKALSEALNSKGLDWSYLPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G I      +S+P  + A
Sbjct: 465 IEFSL---------------------------KDCLNRVWQCGTI---QVDFSMPSRLEA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +    G K   V +    +G+      ++  ++ G   +W   +AP +I ++ I   + 
Sbjct: 495 KYIDEKGEKKEPVMLHRAILGSFERFIGILIENYAGNFPVW---LAPVQIIVMGITDRNS 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C   CE +  +L   G  V  D   E+IG +     L   P  +I+G K   + K+ ++
Sbjct: 552 SC---CESLTTKLINKGYRVKLDLRNEKIGFKIREHTLNRIPYLLIIGDKEEKEGKIAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R       +SLEE +   +   S
Sbjct: 609 TREGNDMGSISLEEFLVILNKSIS 632


>gi|317499591|ref|ZP_07957854.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893140|gb|EFV15359.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 641

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 160/445 (35%), Gaps = 47/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 230 YLTMMEEARKRDHRKLGKELGLF--MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +D+     P +      ++ S  +SY
Sbjct: 288 YVEISTPIMLSRHLWETSGHWDHYKENMYT-TVIDDQDFAIKPMNCPGGVLVYDSEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     ++
Sbjct: 347 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E   LA                          D+  
Sbjct: 406 YNLFGFKY-HVELSTRPDDSMGSDEDWELATDSLRAALD-----------------DLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              + E   A Y    D H E              R  + G I   F    ++       
Sbjct: 448 DYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF----DLH 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  + +     G++     ++     G    W   +AP ++ +I I      
Sbjct: 494 YTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVEVIPI---SDK 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+   L   G     D   E++G +   A L   P  ++VG K   +  V ++ 
Sbjct: 548 HLDYANKVLDTLKAAGIRADIDTRAEKMGYKIREAQLQKIPYMLVVGGKEEENEAVSVRS 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M L++ +       +N 
Sbjct: 608 RFKGDEGQMKLDDFLAAIKEEIANR 632


>gi|254498720|ref|ZP_05111436.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
 gi|254352048|gb|EET10867.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
          Length = 648

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 156/447 (34%), Gaps = 50/447 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L        + G+  W P G      +   +R      G
Sbjct: 240 YLFRIEEAEKRDHRKLGKTLELF--HFQDIAPGMVFWHPKGWTIYQELERYMRARLADFG 297

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG + ++  EM  + + +++     P +      ++   +KSY
Sbjct: 298 YQEIKTPQLVDKVLWEKSGHWANFRDEMF-VTETDNRHYAVKPMNCPCHIQVYNQGLKSY 356

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R E      G+MR R  +  DA+ F  T +  +   + M      +
Sbjct: 357 RDLPLRFSEFGNCHRCEPSGSLHGLMRVRNMVQDDAHIF-CTEDQIQSEVDMMLQLVQSV 415

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  R    P       +    A+    Q    +       P E   +   I 
Sbjct: 416 YTDFGFNEIKYRLALRPEKRVGGDDVWDKAEAALKQAMKDRTIEWVDAPGEGAFYGPKIE 475

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MS 299
            +                                     +G I+  GT    +S+P  + 
Sbjct: 476 CSLSDC---------------------------------LGRIWQCGTIQVDFSMPGRLD 502

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++   DG K   V +    +G+      ++   + GK  +W   ++P + +++ I    
Sbjct: 503 ASYIAEDGSKQIPVMLHRAILGSFERFMGILIEHYAGKLPLW---LSPVQAAVLTI---S 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  +++   L K G    +D   E+IG +     L   P  +++G K V   +V +
Sbjct: 557 EKQNDYAQQVTQILQKRGLRANFDLRNEKIGFKIREHTLQKVPYLLVIGDKEVESGQVAV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M+++ V +  +   +  
Sbjct: 617 RSREGTDLGVMTIDTVCDTLTQEIAQK 643


>gi|149374489|ref|ZP_01892263.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149361192|gb|EDM49642.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 641

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 155/443 (34%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      KL L    + + + G+  W P G      +   +R +Q++
Sbjct: 229 KAYLHRLEEAEKRDHRKIGKKLSLF--HMQEEAPGMVFWHPDGWSLYQEIEQYMRGKQHK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S  LW +SG +D +  +M              P +      +F   +K
Sbjct: 287 HGYQEIKTPQVVSRALWEKSGHWDKFKDDMFTTESEK-HDYAIKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F    +  +   +       
Sbjct: 346 SYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIF-CEEDAIQQEVSDFIGMLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   I  +  + P     S E    ++    +    +      +P E       
Sbjct: 405 EIYADFGFTEILYKLSTRPEKRVGSDEVWDKSEAALEEALNREGVDWELLPGEG------ 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A         L D +    +     ++       G +Y        
Sbjct: 459 --------------AFYGPKIEFSLKDCIGRVWQCGTIQVDFSMPGRLGAQY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +    +G+      ++   ++G    W   +AP +I+++NI  +    R
Sbjct: 498 ADNSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPTW---LAPTQIAVLNITDN---QR 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D C+ +  +   +G  V  D   E+IG +     +   P  V++G K V ++ V ++ R 
Sbjct: 552 DYCQNLAKKWDSLGYRVNADLRNEKIGFKIREHTINKVPFLVVIGDKEVENNAVAVRTRK 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 +SLE      +   +  
Sbjct: 612 GEDLGTLSLEAFEQLMADEINRK 634


>gi|326570601|gb|EGE20637.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 639

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 161/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R
Sbjct: 226 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHPNGWTIWQVLEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + Q   G +E+  P +    LW +SG +D+YG+ M   A    +     P +      +F
Sbjct: 282 KVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGEMMFTTASEK-RDYAIKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTNAQIRQEALNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I M+  + P     + E   LA+        +          E  
Sbjct: 400 IKLTLDVYKDFGFDHIQMKLSTRPEKRVGADELWDLAEQALADALDNAGLDWELQAGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  + G        ++LP
Sbjct: 460 FYGPKIEFSL---------------------------QDCIGRVWQCGT---LQLDFNLP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             ++A F G  G ++  V +    +G+      ++   + G    W   +AP ++ ++NI
Sbjct: 490 ERLNAEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAW---LAPQQVVVMNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D+   + ++L+  G     D   E+IG +     L   P  +I+G K V   
Sbjct: 547 TDK---QADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       M+L++ I          
Sbjct: 604 TVNVRTRTGENLGSMNLDDFIAVLDKAIEKK 634


>gi|33592589|ref|NP_880233.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33596580|ref|NP_884223.1| threonyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|33601133|ref|NP_888693.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|81425212|sp|Q7VY64|SYT_BORPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81427196|sp|Q7W912|SYT_BORPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81431262|sp|Q7WKF7|SYT_BORBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33572235|emb|CAE41786.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33573281|emb|CAE37262.1| threonyl-tRNA synthetase [Bordetella parapertussis]
 gi|33575568|emb|CAE32646.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|332382006|gb|AEE66853.1| threonyl-tRNA synthetase [Bordetella pertussis CS]
          Length = 649

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 152/444 (34%), Gaps = 39/444 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L        + G+  W P G      V   +R+     G
Sbjct: 236 YLHMLEEAERRDHRKIGRELDLF--HFQDEAPGLIFWHPKGWALWQQVEQYMRKVYQDNG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M      N +     P +      IF + + SY
Sbjct: 294 YQEVKAPQILDLTLWKKTGHWDNYRENMFTTESEN-RVYGLKPMNCPGHVQIFNAGLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 353 RELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEDQLQDECAAFTALLQKV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   +  +  + P     S E    A+T   +            P E   +   + 
Sbjct: 412 YKDFGFTEVLYKVATRPEKRIGSDEIWDKAETALMESLRRTGCEFEISPGEGAFYGPKVE 471

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++  + +     ++       G +Y          
Sbjct: 472 Y--------------------TLKDAIGRHWQCGTIQVDFSMPVRLGAEY-------VDQ 504

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D +   V +    +G++     ++  +H G     P  +AP +  +  I  H     + 
Sbjct: 505 NDQRRPPVMLHRAILGSLERFIGMLIENHAGAM---PPWLAPLQAVVCCISEHSA---EY 558

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I   L K G  V  D  GE+I  +     L   P  ++VG K + +  V ++     
Sbjct: 559 AAQITQSLKKQGFRVQADLRGEKITRKIREHSLQKIPYLLVVGDKEMQNGTVAVRGLGGL 618

Query: 425 IREDMSLEEVINYASHRFSNNRPV 448
               ++L++ I   +   S  R V
Sbjct: 619 DLGVIALDDFIARLAEDISTRRNV 642


>gi|66045402|ref|YP_235243.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|75502334|sp|Q4ZUG7|SYT_PSEU2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|63256109|gb|AAY37205.1| Threonyl-tRNA synthetase, class IIa [Pseudomonas syringae pv.
           syringae B728a]
          Length = 640

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|332798664|ref|YP_004460163.1| threonyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696399|gb|AEE90856.1| threonyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 636

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 156/438 (35%), Gaps = 41/438 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L +  IH+   G   + P G    + +    R+E +
Sbjct: 230 LDEYLTRIEEAKRRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIWNLLTDFWRKEHS 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + + +LW  SG +D Y + M      +D      P +      ++++  
Sbjct: 288 KRGYQEIKTPIILNEELWRRSGHWDHYKENMY-FTKIDDMNYAVKPMNCPGGILMYKTDS 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++ L  R EL     G+MR R F   DA+ F + P   +     +    
Sbjct: 347 RSYRDLPIRLGELGLVHRHELSGVLHGLMRVRCFTQDDAHIFMM-PSQIEDEIIGVIDLV 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G +   +   + P     S E    A          K         +   +  
Sbjct: 406 DYFYQIFGFEY-NVELSTRPENSMGSDELWDQATAALQGALDKKGMSYKINEGDGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               K    R  + G I     +       +
Sbjct: 465 KIDF---------------------------HLKDSLGRTWQCGTI-QLDFQMPERFDLS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  V +     G++     ++   + G   +W   +AP +  ++ I    + 
Sbjct: 497 YIGADGEKHRPVMIHRVIFGSIERFIGILIEHYAGAFPVW---LAPVQARVLPI---SEK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+  +L + G  V  D+  E+IG +   A +   P  +IVG K  +++ V ++ 
Sbjct: 551 HMDYAYKVKKQLEEAGIRVEVDERNEKIGYKVRDAQMKKIPYMLIVGDKEANENTVSVRT 610

Query: 421 RLTGIREDMSLEEVINYA 438
           R  G      +E  I+  
Sbjct: 611 REKGDVGQKPIETFIDEV 628


>gi|330973951|gb|EGH74017.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 640

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|238927112|ref|ZP_04658872.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885092|gb|EEQ48730.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 639

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 162/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAAKRDHRKLGKELDLFS--LHEEGPGFPFFHPNGMALRNALLDYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M    + +D+     P +      ++RS + SY
Sbjct: 291 YQEISTPVILSRKLWETSGHWFHYRENMYT-TEIDDEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+ F +TP+  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAHLF-VTPDQIEGEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     + E   LA  G  Q       +D+ +   +  F     
Sbjct: 409 YRTFGLTY-KAELSTRPEDSMGTDEMWELATNGL-QKALDNRGLDYVVNEGDGAFYGPKI 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + +                             R  + G I             T+ G
Sbjct: 467 DFHLRDS--------------------------IGRTWQCGTI-QLDMSLPEKFDLTYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++  ++ G   +W   +AP ++ ++ I    +   +
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILIENYAGAFPVW---MAPVQVRILPIT---ERHAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+Y ++   G  V  D+  E+ G +   + +   P  ++VG +      V ++    
Sbjct: 554 YAEKLYKKMFDCGIRVEIDERNEKTGYKIRESQVKKTPYTIVVGDQEQESGTVAMRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS ++ I     + +  
Sbjct: 614 KNSTTMSSDDFIALVQEKIATR 635


>gi|302187613|ref|ZP_07264286.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 640

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|83647272|ref|YP_435707.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123753567|sp|Q2SDJ2|SYT_HAHCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83635315|gb|ABC31282.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 637

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 145/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      KL L    + + + G+  W   G      +   +R++  +  
Sbjct: 231 YLHRIEEAEKRDHRKIGKKLGLF--HMQEEAPGMVFWHSDGWTLYQVIEQYMRKQLRKHD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG ++ +  +M       D+     P +      +F   ++SY
Sbjct: 289 YKEIKTPQVVERTLWEKSGHWEKFRDDMFTTQSE-DRDFAIKPMNCPCHVQVFNQGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +    K       +
Sbjct: 348 RDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIF-CTEEQIQEEVGKFIDFLHEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     S E    ++        +K      +P E         
Sbjct: 407 YADFGFSEIIYKLSTRPEKRVGSDEIWDKSEKALADALDAKGLPWEELPGEG-------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A         L D L    +     ++       G +Y          
Sbjct: 459 ------------AFYGPKVEFSLKDCLGRLWQCGTVQVDFSMPGRLGAQY-------VSD 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   V +    +G+      ++   ++G    W   +AP +++++NI        D 
Sbjct: 500 EQVRKTPVMLHRAILGSFERFIGILIEHYEGAFPSW---LAPTQVAILNITDK---QADY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C+KI   L+  G  V  D   E+I  +     L   P   +VG K V    + I+ R   
Sbjct: 554 CKKIGEILNDKGFRVRLDLRNEKINYKIREHTLNRVPFLAVVGDKEVETQCLAIRTRQGE 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS+        +  +  
Sbjct: 614 DLGVMSISAFEELLQNEEAKR 634


>gi|186476316|ref|YP_001857786.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|238691316|sp|B2JJJ7|SYT_BURP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|184192775|gb|ACC70740.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 635

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 145/442 (32%), Gaps = 45/442 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y   M        +     P +      +F   ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRDNMFTTESEK-RDYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  ++ ++    P     + E    A+ G      +       +P E   +   + 
Sbjct: 407 YKDFGFDNVEIKLSLRPDARAGTDEIWDRAEQGLRDALTACGVTWEELPGEGAFYGPKVE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G          LP  + A F
Sbjct: 467 Y---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGAEF 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   + +    +G+M     ++   H G    W   +AP ++ ++NI    +  
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  M ++           
Sbjct: 611 GGIDLGVMPVDAFSERLRQDVQ 632


>gi|119774900|ref|YP_927640.1| threonyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|166225496|sp|A1S6G4|SYT_SHEAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119767400|gb|ABL99970.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella
           amazonensis SB2B]
          Length = 642

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 151/443 (34%), Gaps = 44/443 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR + +    
Sbjct: 233 LARLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFRELETFIRHKLSEYDY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   A  N +     P +      IF   +KSYR
Sbjct: 291 QEVKGPFMMDRVLWERSGHWDKYADAMFTTASEN-REYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T E  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVQEEVSACIRMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P       +    A++   +   +       +P E   +   I  
Sbjct: 409 STFGFENIVVKLSTRPEKRIGDDDMWDRAESALIEALNANGIAFEILPGEGAFYGPKIEF 468

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      Y+LP  + AT+ 
Sbjct: 469 TL---------------------------HDCLDRAWQCGTV---QLDYALPGRLGATYV 498

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             D      V +    +G++     ++   + G+   W   +AP +  ++NI        
Sbjct: 499 AEDNARQTPVMIHRAILGSLERFIGILIEEYAGRFPAW---LAPVQAVVMNITDK---QA 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  E++     + G     D   E+IG +     L   P  ++VG + + + ++ ++ R 
Sbjct: 553 DYVEELVKFFKEQGIRASQDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENREIAVRTRD 612

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS++  +     + S+ 
Sbjct: 613 GKDLGKMSIDAFVASVKEQISHR 635


>gi|315126513|ref|YP_004068516.1| threonyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315015027|gb|ADT68365.1| threonyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 636

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 158/452 (34%), Gaps = 49/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   +    + + G+  W   G      +   +R
Sbjct: 227 KQLKAYLKRLEE----AEKRDHRRIGKALDLWHWQEEAPGMVFWHNDGWSIYRELEEFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+       E+  P +    LW +SG ++ Y + M        +     P +      IF
Sbjct: 283 EKLREYQYEEVKGPMMMDRSLWEKSGHWEKYSEAMFTTESEK-REYAIKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQIMDEVSAC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G + I ++  + P       E    A+        + D     +P E  
Sbjct: 401 IKMVYDTYETFGFEKIVVKLSTRPEQRIGEDEMWDKAELALADALKANDIEFDYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      ++LP
Sbjct: 461 FYGPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFALP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   + +    V +    +G++     ++   + G    W   +AP ++ ++NI
Sbjct: 491 GRLGATYVAENNERRTPVMIHRAILGSIERFIGILTEEYAGLFPTW---LAPKQVVIMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      ++I  +L+K+G     D   E+IG +     L   P  ++VG K V   
Sbjct: 548 TDK---QAPYVQEIVQKLNKLGIRAAADLRNEKIGFKIREHTLKRIPYLLVVGDKEVEQQ 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +V ++ R        ++++ I   S    N +
Sbjct: 605 EVAVRTRTGEDLGKFNVDDFIAKISEEIKNRQ 636


>gi|145634324|ref|ZP_01790034.1| threonyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268304|gb|EDK08298.1| threonyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 643

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 154/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E    A+ G                 E   + 
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDRAEAGLAAALVHNGLEYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G +      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSR 635


>gi|326574765|gb|EGE24699.1| threonyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 639

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 161/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R
Sbjct: 226 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHPNGWTIWQVLEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + Q   G +E+  P +    LW +SG +D+YG+ M   A    +     P +      +F
Sbjct: 282 KVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGEMMFTTASEK-RDYAIKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTNAQIRQEALNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I M+  + P     + E   LA+        +          E  
Sbjct: 400 IKLTLDVYKDFGFDHIQMKLSTRPEKRVGADELWDLAEQALADALDNAGLDWELQAGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  + G        ++LP
Sbjct: 460 FYGPKIEFSL---------------------------QDCIGRVWQCGT---LQLDFNLP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             ++A F G  G ++  V +    +G+      ++   + G    W   +AP ++ ++NI
Sbjct: 490 ERLNAEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPTW---LAPQQVVVMNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D+   + ++L+  G     D   E+IG +     L   P  +I+G K V   
Sbjct: 547 TDK---QADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       M+L++ I          
Sbjct: 604 TVNVRTRTGDNLGSMNLDDFIKILDGAIEKK 634


>gi|326571308|gb|EGE21325.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 639

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 161/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R
Sbjct: 226 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHPNGWTIWQVLEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + Q   G +E+  P +    LW +SG +D+YG+ M   A    +     P +      +F
Sbjct: 282 KVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGEMMFTTASEK-RDYAIKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTNAQIRQEALNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I M+  + P     + E   LA+        +          E  
Sbjct: 400 IKLTLDVYKDFGFDHIQMKLSTRPEKRVGADELWDLAEQALADALDNAGLDWELQAGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  + G        ++LP
Sbjct: 460 FYGPKIEFSL---------------------------QDCIGRVWQCGT---LQLDFNLP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             ++A F G  G ++  V +    +G+      ++   + G    W   +AP ++ ++NI
Sbjct: 490 ERLNAEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPTW---LAPQQVVVMNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D+   + ++L+  G     D   E+IG +     L   P  +I+G K V   
Sbjct: 547 TDK---QADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       M+L++ I          
Sbjct: 604 TVNVRTRTGDNLGSMNLDDFIKILDGAIEKK 634


>gi|326563502|gb|EGE13765.1| threonyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326573810|gb|EGE23767.1| threonyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 639

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 160/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R
Sbjct: 226 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHPNGWTIWQVLEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + Q   G +E+  P +    LW +SG +D+YG+ M   A    +     P +      +F
Sbjct: 282 KVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGEMMFTTASEK-RDYAIKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTNAQIRQEALNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I M+  + P     + E   LA+        +          E  
Sbjct: 400 IKLTLDVYKDFGFDHIQMKLSTRPEKRVGADELWDLAEQALADALDNAGLDWELQAGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  + G        ++LP
Sbjct: 460 FYGPKIEFSL---------------------------QDCIGRVWQCGT---LQLDFNLP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A F G  G ++  V +    +G+      ++   + G    W   +AP ++ ++NI
Sbjct: 490 ERLDAEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAW---LAPQQVVVMNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D+   + ++L+  G     D   E+IG +     L   P  +I+G K V   
Sbjct: 547 TDK---QADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       M+L++ I          
Sbjct: 604 TVNVRTRTGENLGSMNLDDFIAVLDKAIEKK 634


>gi|296113663|ref|YP_003627601.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921357|gb|ADG61708.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 639

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 160/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R
Sbjct: 226 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHPNGWTIWQVLEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + Q   G +E+  P +    LW +SG +D+YG+ M   A    +     P +      +F
Sbjct: 282 KVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGEMMFTTASEK-RDYAIKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTNAQIRQEALNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I M+  + P     + E   LA+        +          E  
Sbjct: 400 IKLTLDVYKDFGFDHIQMKLSTRPEKRVGADELWDLAEQALADALDNAGLDWELQAGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  + G        ++LP
Sbjct: 460 FYGPKIEFSL---------------------------QDCIGRVWQCGT---LQLDFNLP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A F G  G ++  V +    +G+      ++   + G    W   +AP ++ ++NI
Sbjct: 490 ERLDAEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAW---LAPQQVVVMNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D+   + ++L+  G     D   E+IG +     L   P  +I+G K V   
Sbjct: 547 TDK---QADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       M+L++ I          
Sbjct: 604 TVNVRTRTGENLGSMNLDDFIAVLDKAIEKK 634


>gi|170695920|ref|ZP_02887060.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139218|gb|EDT07406.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 635

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 147/440 (33%), Gaps = 45/440 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M        +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNTLAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     + E    A+ G  +   +       +P E   +   
Sbjct: 405 SVYSDFGFDHVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R  + G          LP  + A
Sbjct: 465 VEY---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   + +    +G+M     ++   H G    W   +AP ++ ++NI    +
Sbjct: 495 EYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPMQVVVMNIA---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++
Sbjct: 549 SQAEYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVR 608

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R       M  +  I    
Sbjct: 609 ARGGVDLGVMPADTFIERLR 628


>gi|56460507|ref|YP_155788.1| threonyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|73919798|sp|Q5QYN4|SYT_IDILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56179517|gb|AAV82239.1| Threonyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 638

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 161/452 (35%), Gaps = 49/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   + H    + G+  W   G      +   IR
Sbjct: 227 KQLKAYLQRLEE----AEKRDHRKIAKAQDLFHWQEEAPGMVFWHHNGWTIFRELETYIR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+       E+  P +    LW +SG ++ + + M   +  N +     P +      IF
Sbjct: 283 EKMREYEYQEVKGPMMMDRVLWEKSGHWEKFSELMFTTSSEN-REYAVKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +      
Sbjct: 342 NQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEQQVQEEVAGC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G ++I ++  + P            ++T   Q   + D     +P E  
Sbjct: 401 IKMVYETYKTFGFENIDVKLSTRPEKRLGDDATWDRSETALAQALKNNDIDFSYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G I      ++LP
Sbjct: 461 FYGPKIEFTLFDC---------------------------LGRAWQCGTI---QLDFALP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+ G D + H  V +    +G++     ++   + G   +W   ++P ++ L+NI
Sbjct: 491 GRLGATYVGEDNERHTPVMIHRAILGSLERFMGILIEEYAGHFPLW---LSPTQVVLMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +     D   K+   L++ G     D   E+IG +     L   P  ++VG K V   
Sbjct: 548 TDNQS---DYVRKVVKTLNEKGIRASADLRNEKIGFKIREHTLKRVPYLLVVGDKEVEAG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +V ++ R         LE+ I          +
Sbjct: 605 EVAVRTRGGEDLGKFPLEDFITRVEDEVRTRK 636


>gi|83590594|ref|YP_430603.1| threonyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|83573508|gb|ABC20060.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Moorella
           thermoacetica ATCC 39073]
          Length = 633

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 88/445 (19%), Positives = 155/445 (34%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L + +  +H+   G   +   G    + +    REE  
Sbjct: 227 LEEYLHRLEEARKRDHRRLGAQLGIFS--LHEEGPGFPFFHHKGMIIRNELEQFWREEHR 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G +E+  P + S  LW +SG +D Y + M      +       P +      ++++  
Sbjct: 285 RAGYLEIRTPVILSRTLWEQSGHWDHYRENMY-FTKIDGADYAIKPMNCPGAILVYKTEQ 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++ L  R E      G+MR R F   D++ F L P         +    
Sbjct: 344 HSYRDLPLRLAELGLVHRHEKSGVLHGLMRVRAFTQDDSHIFML-PSQIASEIQGVIDLV 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R ++  G K   +   + P     S E    A +   Q   +K         +      
Sbjct: 403 DRFYNLFGFKY-HVELSTRPDNAMGSEEIWETATSALRQALEAKGMPYAVNEGDGA---- 457

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                         Y    D H E              R  + G I             T
Sbjct: 458 -------------FYGPKIDFHLEDSLG----------RTWQCGTI-QLDFLMPEKFDLT 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ I      
Sbjct: 494 YIGEDGQKHRPVMIHRVVFGSIERFIGILIEHYGGSFPVW---LAPVQVRVLPIT---DR 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+ A L + G     +D  ++IG +   A +   P  ++VG K  ++  V ++ 
Sbjct: 548 HNDYAFKVRAELIRAGIRAEVNDRNDKIGYKIRAAQMEHIPYMLVVGDKEAAEGTVAVRE 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    + L E I   +   S  
Sbjct: 608 RQAGDTGRVPLAEFIARVTREISRR 632


>gi|296187094|ref|ZP_06855492.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048288|gb|EFG87724.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 560

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE  +   
Sbjct: 153 YLNMLEEAKKRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMIIRNTLQNFWREMHSAAD 210

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      +++     P +      ++++ I SY
Sbjct: 211 YDEIMTPVILNEKLWRQSGHWDHYKENMY-FTKIDNEDYAIKPMNCPGSILVYKNTIHSY 269

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++ L  R E      G+MR R F   DA+ F      +    N +       
Sbjct: 270 RELPLRYAEMGLAHRHEKSGALHGLMRVRCFTQDDAHMFLAKDNITDEIVN-VIKLIDDF 328

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E    A  G  +   +          +   +   I 
Sbjct: 329 YKVFGFEYF-VELSTRPEDSMGSDEDWEAATNGLRKALDTIGLKYKVNEGDGAFYGPKID 387

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G +     +       T+ G
Sbjct: 388 F---------------------------HLRDCIGRTWQCGTV-QLDFQMPERFDLTYIG 419

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H   M      G++     ++   + G    W   +AP ++ ++NI        D
Sbjct: 420 ADGEKHRPVMVHRVVFGSVERFIGILIEHYAGAFPAW---LAPVQVKIMNITDD---QID 473

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V  D   E+IG +   A L   P  +++G K + ++ V ++ R  
Sbjct: 474 YANKVAKELKKNKIRVEVDLRNEKIGYKIREAQLQKVPYMLVLGDKEMKENTVAVRSRKL 533

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+L++ +          
Sbjct: 534 GDLGAMALDQFVEKIKGEIDRK 555


>gi|15602458|ref|NP_245530.1| threonyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431883|sp|P57857|SYT_PASMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12720863|gb|AAK02677.1| ThrS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 643

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 153/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLSEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G + +YG  M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTACIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G ++I ++  + P     + E    A+ G                 E   + 
Sbjct: 404 VYDIYSTFGFENIQVKLSTRPEKRIGADEMWDRAEAGLAAALSHNGLEYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLDREWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 NASYVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAIVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   LS  G  V  D   E+IG +     L   P  ++ G K +   KV 
Sbjct: 549 -DSQSDYVQKVVKTLSDAGLRVKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEIEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE ++    +  + 
Sbjct: 608 VRTRKGADLGTFTIEEFLDILKKQVRSR 635


>gi|332993607|gb|AEF03662.1| threonyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 638

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 157/451 (34%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   + H    + G+  W   G      +   +R
Sbjct: 227 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHWQEEAPGMVFWHNDGWSIYTELEKFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+       E+  P +    LW +SG ++ Y + M        +     P +      IF
Sbjct: 283 EKLRDYTYDEVKGPLMMDRSLWEKSGHWEKYAENMFTTESEK-REYAIKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQILEEVSGC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G   + ++  + P     S E    ++    +   + D      P E  
Sbjct: 401 IKMVYETYAAFGFDKVAVKLSTRPEKRVGSDEIWDKSEAALAEALKANDIEFEYQPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      +S+P
Sbjct: 461 FYGPKIEFTL---------------------------HDCLNRAWQCGTV---QLDFSMP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + +T+   DG+    V +    +G++     ++     G   +W   +AP ++ ++NI
Sbjct: 491 GRLGSTYVAEDGERKVPVMIHRAILGSLERFIGILTEEFAGFFPLW---LAPQQVVILNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +  ++   +L K G     D   E+IG +     L   P  ++VG K +   
Sbjct: 548 T---DSQGEYAQECVKKLQKSGFRAKSDLRNEKIGFKIREHTLKRVPYMLVVGDKEMEAG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +V ++ R       MSLE  I  A+   +  
Sbjct: 605 EVAVRSRSGDDLGKMSLESFIAMANQEVAEK 635


>gi|330958898|gb|EGH59158.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 640

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLAV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRR 634


>gi|332141016|ref|YP_004426754.1| threonyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|238693239|sp|B4RSL8|SYT_ALTMD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|327551038|gb|AEA97756.1| threonyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 638

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 157/451 (34%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   + H    + G+  W   G      + + +R
Sbjct: 227 KQLKSYLQRLEE----AEKRDHRKIGKALNLFHWQEEAPGMVFWHNDGWSIYTELESFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P +    LW +SG +D Y + M        +     P +      IF
Sbjct: 283 KKLREYGYDEVKGPLMMDRSLWEKSGHWDKYAENMFTTESEK-REYAVKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQILEEVSGC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G ++I ++  + P     + E    ++    +   + D      P E  
Sbjct: 401 IKMVYETYAAFGFENIKVKLSTRPEKRVGADEIWDKSEAALAEALKANDIEFDYQPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      +S+P
Sbjct: 461 FYGPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSMP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + +T+   DG+    V +    +G++     ++     G   +W   +AP ++ ++NI
Sbjct: 491 GRLGSTYVAEDGERKVPVMIHRAILGSLERFIGILTEEFAGFFPLW---LAPQQVVVMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D       +L  +G     D   E+IG +     L   P  ++VG K +   
Sbjct: 548 TDK---QADYASDCVKKLQDLGFRAKSDLRNEKIGFKIREHTLKRIPYMLVVGDKEMEAG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +V ++ R       M LE+ I  A       
Sbjct: 605 EVAVRSRRGDDLGKMGLEDFIAMAQQEVVEK 635


>gi|332290253|ref|YP_004421105.1| threonyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330433149|gb|AEC18208.1| threonyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 643

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 153/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLKRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRAKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +YG  M   +  N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTSSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +         
Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTENQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G   I ++  + P     S E    A+    +            P E   + 
Sbjct: 404 VYDIYSTFGFTDIYVKLSTRPEHRIGSDEMWDRAEADLAKALEHNGLEYEVQPGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               +    R  + G +      ++LP  +
Sbjct: 464 PKLEFAL---------------------------RDSIGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++   D +    V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 NASYVAEDNERKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  + +   LS  G  V  D   E+IG +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQNVVKTLSDAGLRVKSDLRNEKIGFKIREHTLKRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  N 
Sbjct: 608 VRTRKGADLGTFTVEEFTEILKNQVRNR 635


>gi|307822740|ref|ZP_07652971.1| threonyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307736344|gb|EFO07190.1| threonyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 635

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 158/449 (35%), Gaps = 49/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L  L+E    AE   H+ + +T  + H  + + G+  W   G      V   IRE+ 
Sbjct: 229 QAYLHRLEE----AEKRDHRKLAKTLDLFHSQEEAPGMVFWHEKGWVIYQQVEQYIREKL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW  SG ++ +G  M+      ++     P +      I+   
Sbjct: 285 RVNGYGEVKTPQVVDRSLWERSGHWEKFGD-MIFTTHSENRDYAIKPMNCPCHVQIYNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +     
Sbjct: 344 LKSYRDLPIRLAEFGSCHRNEPSGTLHGLMRVRNFVQDDAHIF-CTEGQIQDEVSTFIDM 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + + ++  + P            A+        +K       P E   + 
Sbjct: 403 LFDVYKDFGFEEVIIKLSTRPANRVGDDSVWDKAENALELALNTKGLKWDLQPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I  +                            K    R  + G I      +S+P  +
Sbjct: 463 PKIEFSL---------------------------KDCIGRVWQCGTI---QVDFSMPGRL 492

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   DG     V +    +G++     ++   H G   +W   ++P ++ ++NI   
Sbjct: 493 DATYIAEDGSRQVPVMLHRAILGSLERFIGILIEQHAGTFPLW---LSPVQVVVLNIT-- 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +   +I   L K G  V  D   E+IG +     +   P  VI+G K +    + 
Sbjct: 548 -DRHAEYAAQIMLDLEKQGIRVKIDLRNEKIGFKIREHSMQRVPYLVIIGDKELEQQSIT 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ +       +S+ E         +  +
Sbjct: 607 VRTQKGDDLGSLSIHEFTERLKQEITGRQ 635


>gi|311105446|ref|YP_003978299.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760135|gb|ADP15584.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 650

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 150/448 (33%), Gaps = 43/448 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R          + G+  W P G      V   +R   
Sbjct: 234 EAYLHMLEE----AERRDHRKIGRELELFHFQDEAPGLIFWHPKGWALWQQVEQYMRSVY 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D+Y + M      N +     P +      IF + 
Sbjct: 290 RDNGYQEVKAPQILDISLWKKTGHWDNYRENMFTTESEN-RVYGLKPMNCPGHVQIFNAG 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP  + +     R+E      G+MR R F   D + F  T E  +         
Sbjct: 349 LHSYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEEQLQDECADFTAL 407

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   +  +  + P     S E    A+    +            P E   + 
Sbjct: 408 LQKVYRDFGFTEVLYKVATRPEKRIGSDEVWDTAEAALMESLRRTGCEFEVSPGEGAFYG 467

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                       L D++  + +     ++       G +Y      
Sbjct: 468 PKVEY--------------------TLKDAIGRHWQCGTIQVDFSMPVRLGAEY------ 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                D +   V +    +G++     ++  +H G     P  +AP +  +  I    + 
Sbjct: 502 -VDQNDQRRPPVMLHRAILGSLERFIGMLIENHAGAM---PPWLAPVQAVVCCI---SEP 554

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   +I   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++ 
Sbjct: 555 SADYAAEITQSLKKQGFRVESDLRGEKITRKIREHSLQKVPYILVVGDKEKQNGTVAVRG 614

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
                   ++ +E +   S   S  R V
Sbjct: 615 LGGLDLGAIAYDEFVARLSEDVSTRRDV 642


>gi|266620391|ref|ZP_06113326.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288868018|gb|EFD00317.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 633

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 165/446 (36%), Gaps = 47/446 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T M      G   +LP G    + +    RE   R G
Sbjct: 230 YLTRIEEAKKRDHRKLGKELGLFTIM--DEGPGFPFFLPKGMVLKNALTNFWREIHEREG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P + +  LW  SG +D Y + M      +D      P +      +++S  +SY
Sbjct: 288 YVEIATPIMLNRSLWETSGHWDHYKENMYTTT-IDDTEFAIKPMNCPGSMLVYKSQPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+MR R F   DA+ + +TPE        +      +
Sbjct: 347 RDLPLRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIY-MTPEQITDEIKGVVRLIDEV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E   +A     +    +   D+ I   +  F     
Sbjct: 406 YNMFGFKY-HVELSTRPEDSMGSDEDWEMATNSLREAL-DEMGYDYIINEGDGAF----- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
                      Y    D H E              R  + G I   F    ++     A 
Sbjct: 459 -----------YGPKIDFHLEDSLG----------RTWQCGTIQLDFQLPLRF----EAE 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  + +    +G++     ++   + GK   W   +AP ++ ++ I   +  
Sbjct: 494 YTGADGEKHRPIMIHRVLLGSIERFIGILIEHYAGKFPAW---LAPVQVKVLPISDKNAA 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                + +Y  L K       D+  E+IG +   A L   P  ++ G+K   +  V +++
Sbjct: 551 ---YAKDVYNTLKKNHIRCEIDERPEKIGYKIREAQLEKVPYMLVAGAKEEENHTVAVRY 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R +G    MS+E+            +
Sbjct: 608 RDSGENVTMSVEDFAEMLKKEIEERK 633


>gi|326562776|gb|EGE13071.1| threonyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326563180|gb|EGE13448.1| threonyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 639

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 160/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +      + + + G+  W P G      +   +R
Sbjct: 226 KQLKAYLQRLEE----AEKRDHRKIGKALNLFHMQEQAPGMVFWHPNGWTIWQVLEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           + Q   G +E+  P +    LW +SG +D+YG+ M   A    +     P +      +F
Sbjct: 282 KVQKDNGYLEIKTPQIVDRSLWEKSGHWDNYGEMMFTTASEK-RDYAIKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTNAQIRSEALNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I M+  + P     + E   LA+        +          E  
Sbjct: 400 IKLTLDVYKDFGFDHIQMKLSTRPEKRVGADELWDLAEQALADALDNAGLDWELQAGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  + G        ++LP
Sbjct: 460 FYGPKIEFSL---------------------------QDCIGRVWQCGT---LQLDFNLP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A F G  G ++  V +    +G+      ++   + G    W   +AP ++ ++NI
Sbjct: 490 ERLDAEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAW---LAPQQVVVMNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D+   + ++L+  G     D   E+IG +     L   P  +I+G K V   
Sbjct: 547 TDK---QADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       M+L++ I          
Sbjct: 604 TVNVRTRTGDNLGSMNLDDFIAVLDKAIEKK 634


>gi|256822932|ref|YP_003146895.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796471|gb|ACV27127.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 639

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 157/448 (35%), Gaps = 49/448 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + +      I + + G+  W   G      +   IRE  
Sbjct: 229 KAYLHRLEE----AEKRDHRKIAKALDLFHIQEEAPGMIFWHDKGWTIYKTLEQYIRERL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW +SG +D +G +M  L   +++     P +      IF   
Sbjct: 285 KEHDYQEVKTPQMVDRSLWEKSGHWDKFGDDMFTLKS-DERDYAIKPMNCPCHVQIFNVG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T +  +   +K    
Sbjct: 344 LKSYRDLPLRMAEFGSCHRNEPSGALHGIMRLRNFVQDDAHIF-CTEDQIQEEVSKFIAM 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G   + ++  + P     + +    A+        +        P E   + 
Sbjct: 403 LYDVYADFGFTDVIVKLSTRPEQRVGTDQEWDKAEAALADALKANSIQFEYQPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      +S+P  +
Sbjct: 463 PKLEFTL---------------------------KDCLERHWQCGTI---QVDFSMPGRL 492

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +    G+    V +    +G++     ++     GK   W   +AP +  ++NI   
Sbjct: 493 DAEYVAESGERETPVMLHRAILGSLERFIGILIEEFAGKFPAW---LAPTQAVVMNITDK 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D C+K+   L   G  V  D   E+IG +     L   P  ++VG + V ++ V 
Sbjct: 550 ---QADFCQKVVESLKNKGFRVNSDLRNEKIGFKIREQTLARVPFLLVVGDREVENNHVA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       MS+E          +  
Sbjct: 607 VRTRDGEDLGSMSIEAFAELLEAEVTKR 634


>gi|329904275|ref|ZP_08273747.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548052|gb|EGF32784.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 635

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 150/448 (33%), Gaps = 49/448 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    A+   H+ + R        + + G+  W P G      V   +R   
Sbjct: 229 EAYLHMLEE----ADKRDHRKLGRLLDLFHFQEEAPGMIFWHPKGWSVWQQVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW +SG +++Y + M        ++    P +      IFRS 
Sbjct: 285 QDNGYQEVKAPQILDISLWEKSGHWENYKENMFTTESEK-RSYALKPMNCPGHVQIFRSD 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP  + +     R+E      G+MR R F   D + F  T +            
Sbjct: 344 MRSYRDLPLRYGEFGQCHRNEPSGSLHGIMRVRGFTQDDGHIF-CTEDQILEECVAYTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G  +I  +  + P     S E    A+                 P E   + 
Sbjct: 403 LHKVYADFGFANITYKVATRPEKRVGSEEAWDKAENALITSLERSGCEFEISPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                                    R  + G +      +S+P  +
Sbjct: 463 PKIEYTLTD---------------------------AIGRAWQCGTM---QVDFSMPIRL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D  +   V +    +G+      ++  ++ G     P  +AP ++ ++NI   
Sbjct: 493 GAEYVAEDNSRKVPVMLHRAILGSFERFIGMLLENYSGA---LPMWLAPVQVVVLNI--- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +   L K G  V  D   E+I  +     +   P  ++VG K    + V 
Sbjct: 547 SEGQSDYARSVTQSLKKQGFRVESDLRNEKITFKIREHSVQKVPYIIVVGDKERDAATVA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M +  +I       +  
Sbjct: 607 VRARGNADLGTMPISNLIARLLADVAEK 634


>gi|310827810|ref|YP_003960167.1| threonyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308739544|gb|ADO37204.1| threonyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 637

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 166/449 (36%), Gaps = 41/449 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +  +H+   G   + P G    + +    R E  
Sbjct: 227 LDEYLQRLEEAKKRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMVLRNELENFWRSEHM 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +ADLW  SG +D+Y + M    + + +     P +      ++++  
Sbjct: 285 KKGYKEIKTPIMLNADLWRRSGHWDNYKENMY-FTEIDGQEFAVKPMNCPGGMLVYKTRQ 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R EL     G+MR R F   DA+ F LT +  K     +    
Sbjct: 344 HSYRELPLRMGELGQVHRHELHGALHGLMRVRTFTQDDAHIF-LTMDQVKDEVIGIIDLA 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G K   +   + P       E   +A     +   +K       P +   +  
Sbjct: 403 NEIYDIFGFKY-KVELSTKPEKAIGKDEDWEVATDALREALEAKGMDYQLNPGDGAFYGP 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               +    R  + G I     +       T
Sbjct: 462 KIDF---------------------------HLEDSIGRTWQCGTI-QLDMQMPERFDLT 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+DG+ H  V +     G++     ++     GK  +W   +AP ++ LI +      
Sbjct: 494 YVGSDGEKHRPVILHRTIFGSIERFLGILIEHFAGKFPLW---LAPVQVQLIPV---SDA 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I A+L + G  V  D   E+IG +   A +   P  +++G K V   ++ I++
Sbjct: 548 HDAFTKEIAAKLEEAGIRVEIDFRDEKIGYRIREAQMQKIPYMLVIGDKEVESGRLSIRN 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R TG +E + ++E     +   +    VL
Sbjct: 608 RDTGEQETLKIDEFKYRLAQNIAQKSLVL 636


>gi|121997230|ref|YP_001002017.1| threonyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|166223346|sp|A1WU53|SYT_HALHL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121588635|gb|ABM61215.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Halorhodospira
           halophila SL1]
          Length = 640

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 160/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L     +AE   H+ + RT     + + S G+  W P G +    V   IR
Sbjct: 226 KQLKAYLDRL----AEAERRDHRRLGRTQDLFHVQEESPGMVFWHPRGWRLYLEVQDYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G  E+  P L    LW  SG +  + + M  + +   +     P +     ++F
Sbjct: 282 RLMRDNGYQEIHTPMLVDRSLWERSGHWAMFAENMF-VTESESRDYAVKPMNCPCHVEVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T    +      
Sbjct: 341 KQGLKSYRDLPLRLAEFGSCHRNEPSGTLHGLMRVRGFVQDDAHIF-CTENQIQEEVRTF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R +   G + + +   + P            A++       +        P E  
Sbjct: 400 IDLVYRAYRDFGFEDVLIALSTRPDERVGDDALWDKAESALATALETHGLDYTLQPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            +    R  ++G I      +S+P
Sbjct: 460 FYGPKIEFSL---------------------------RDCLERVWQLGTI---QVDFSMP 489

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A F   DG+    V +    +G++     ++   + G    W   +AP +  ++NI
Sbjct: 490 GRLGAQFVDDDGERRTPVMLHRAILGSLERFIGILIEHYGGALPTW---LAPVQAVVLNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D    +  +L + G     D   E+IG +     L   P  +++G + +   
Sbjct: 547 T---DRQADYARSVEQQLLESGFRAEADLRNEKIGYKIREHTLQKVPYMLVLGDRELESG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++HR       M LEE++   S+  + +
Sbjct: 604 TVAVRHRDGTDLGSMELEELVARLSNDIAGH 634


>gi|300856610|ref|YP_003781594.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300436725|gb|ADK16492.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 637

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 161/444 (36%), Gaps = 42/444 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      +L L +  IH+   G   + P G    + +    R+  ++
Sbjct: 229 KDYLTMMEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNELQNYWRQVHHK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + + +LW +SG +D Y + M      +D+     P +      ++++ I 
Sbjct: 287 AGYDEIMTPIILNEELWHQSGHWDHYKENMY-FTKIDDEDYAIKPMNCPGSILVYKNKIH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + ++ +  R E      G+MR R F   DA+ F +T +  K     +     
Sbjct: 346 SYRDLPIRYGEMGIVHRHEKSGALHGLMRVRCFTQDDAHIF-MTKDNMKDEIVNVIKLID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +     +   +   + P     S E    A  G      +          +   +   
Sbjct: 405 SFYKVFKFEYF-VELSTRPEDSMGSDEDWEAATEGLKDALKAVGLDYKVNEGDGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               K    R  + G +     +       T+
Sbjct: 464 IDF---------------------------HLKDSIGRTWQCGTV-QLDFQMPERFDLTY 495

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H   M      G++     ++  ++ G    W   +AP ++ ++NI       
Sbjct: 496 VGADGEKHRPVMVHRVVFGSIERFIGILIENYAGAFPAW---LAPVQVEVMNIT---DAQ 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L +    V  D   E+IG +   A +   P  +++G K + D  + ++ R
Sbjct: 550 DDYVNEVVEKLKENDIRVESDMRNEKIGYKIREAQMQKVPYMIVLGEKEMKDKTISVRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    M+L++ I+         
Sbjct: 610 KGGDMGTMALDDFISKLKDEIDKK 633


>gi|317403269|gb|EFV83787.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 650

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 149/446 (33%), Gaps = 39/446 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E  R D      +L L        + G+  W P G      V   +R     
Sbjct: 234 EAYLHMLEEAERRDHRKIGRELDLF--HFQDEAPGLIFWHPKGWALWQQVEQYMRSVYRD 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D+Y + M      N +     P +      IF + + 
Sbjct: 292 NGYQEVKAPQILDISLWKKTGHWDNYRENMFTTESEN-RVYGLKPMNCPGHVQIFNAGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F  T E  +           
Sbjct: 351 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEEQLQDECADFTALLQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   +  +  + P     S E    A+    +            P E   +   
Sbjct: 410 KVYRDFGFTEVLYKVATRPEKRIGSDEVWDTAEQALMESLRRTGCEFEISPGEGAFYGPK 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                       L D++  + +     ++       G +Y        
Sbjct: 470 VEY--------------------TLKDAIGRHWQCGTIQVDFSMPVRLGAEY-------V 502

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D +   V +    +G++     ++  +H G     P  +AP +  +  I    +   
Sbjct: 503 DQNDQRRPPVMLHRAILGSLERFIGMLIENHAGAM---PPWLAPVQAVVCCI---SEPSA 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++   
Sbjct: 557 DYAAEITQSLKKQGFRVESDLRGEKITRKIREHSLQKVPYILVVGDKEKQNGTVAVRGLG 616

Query: 423 TGIREDMSLEEVINYASHRFSNNRPV 448
                 ++ ++ +   S   S  R V
Sbjct: 617 GLDLGAIAFDDFVARLSEDVSTRRDV 642


>gi|302389962|ref|YP_003825783.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200590|gb|ADL08160.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
          Length = 637

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 156/447 (34%), Gaps = 45/447 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +  +H+   G   + P G    + +    R+E  
Sbjct: 231 LDEYLKKLEEAKKRDHRKLGKELGLFS--MHEEGPGFPFFHPKGMVLWNTLIDFWRKEHQ 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + + +LW  SG +D Y   M      + +     P +      +++S +
Sbjct: 289 KRGYQEIKTPIILNEELWKRSGHWDHYKTNMY-FTQIDGEGYAIKPMNCPGGILVYKSDV 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ L  R EL     G+MR R F   DA+ + + P   +    ++    
Sbjct: 348 HSYRELPLKLAELGLVHRHELSGVLHGLMRVRSFTQDDAHIYMM-PSQIEQEILEVINLA 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G     +   + P       E    A          K         +   +  
Sbjct: 407 DHIYRIFGFDY-HVELSTRPENSMGPDELWERATAALKNALDKKGLPYRINEGDGAFYGP 465

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                               K    R  + G I      + +P    
Sbjct: 466 KIDF---------------------------HLKDSIGRTWQCGTI---QLDFMMPERFD 495

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ I    
Sbjct: 496 LTYIGPDGEKHRPVMIHRTIFGSLERFIGILIEHYAGAFPVW---LAPIQVKVLPI---S 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   K+ A L      V  D+  E+IG +   A L   P  +IVG K  ++  V +
Sbjct: 550 EKFMDYARKVTAELENSDIRVELDERNEKIGYKIREAQLQKIPYMLIVGEKEAAEGTVSV 609

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     SL++ I   + R  N 
Sbjct: 610 RVREKGDVGMKSLKDFIEEVTTRIKNK 636


>gi|319794591|ref|YP_004156231.1| threonyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315597054|gb|ADU38120.1| threonyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 635

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 150/446 (33%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   I +   RD      +L L    I + + G+  W P G      V   +R   
Sbjct: 227 QLDQYIQRIEEAEKRDHRKLGKELDLF--HIDEVAPGVVFWHPKGWAVWQAVEQYMRGIY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
             TG  E+  P +    LW ++G + +Y   M        +     P +      IF+S 
Sbjct: 285 RDTGYWEVKGPQILDKSLWEKTGHWQNYRDNMFTTESEK-REYALKPMNCPGHVLIFKSD 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP  + +     R+E      G+MR R F   D + F  T +            
Sbjct: 344 LRSYRDLPLRYGEFGQCHRNEPSGALHGIMRVRGFTQDDGHIF-CTEDQILDECIAYTEQ 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     S E    A+    +            P +   + 
Sbjct: 403 LQKVYADFGFTDILYKVATRPENRVGSDELWDKAEHAVMESLRRSGVDFIISPGDGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I                       L D++    +     ++       G +Y      
Sbjct: 463 PKIEY--------------------TLRDAIGRQWQCGTMQVDFNTAERLGGEY------ 496

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               + G+ H V +    +G++     ++   H G    W   +AP +++++NI    + 
Sbjct: 497 -VTESSGRAHPVMLHRAIVGSLERFIGMLIEHHSGALPAW---LAPVQVAVLNI---SEG 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  D   E+I  +     L   P  ++VG K      V ++ 
Sbjct: 550 QADYAAQVAKTLQNQGLRVQLDLHNEKITYKIRKHSLQKLPYILVVGDKEKEAGAVAVRA 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       MSLE  +       ++ R
Sbjct: 610 RGNQDLGAMSLESFVQRLVQDVADKR 635


>gi|299066586|emb|CBJ37776.1| threonine tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 635

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 154/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + +      + + + G+  W P G +    V   +R   
Sbjct: 229 EAYLHMLEE----AEKRDHRKLGKVLDLFHLQEEAPGMVFWHPKGWQIWQAVEQYMRGRL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW  SG +++Y + M  + +   +     P +      IF   
Sbjct: 285 AGAGYSEVRTPQVMDRGLWERSGHWENYKENMF-VTESEKREYAIKPMNCPGHVQIFNHG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    +     R+E      G+MR R F+  DA+ F  T              
Sbjct: 344 LRSYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEGQIMAEAKDFNDL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +++ ++    P     S +    A+ G      +       +P E   + 
Sbjct: 403 AFSVYEDFGFENVAVKLALRPDKRAGSDDIWDHAEDGLRTALRACGVEWEELPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                               K    R  + G +          + A
Sbjct: 463 PKVEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   V +    +G+      ++  +H G   +W   +AP ++ +++I     
Sbjct: 495 EYVAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLW---LAPEQVVVMSIA---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E +   L K G   F D   E+I  +     L   P  V+VG K    ++V ++
Sbjct: 549 AHAEYAESVAQSLQKQGFRAFADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M +   +    + F+N 
Sbjct: 609 ARGNVDLGSMPVSTFVERLQNDFANK 634


>gi|148244740|ref|YP_001219434.1| threonyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166225515|sp|A5CWF9|SYT_VESOH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146326567|dbj|BAF61710.1| threonyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 636

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 155/444 (34%), Gaps = 49/444 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E  R      H+ + +T     I + + G+  W   G      V   +R   
Sbjct: 227 KVYLHKLEEVAR----RDHRKIGKTQDLFHIQEETPGMVFWHAKGWILYQLVEQYMRGIF 282

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L    LW +SG +D +G  M       D+     P +      I+   
Sbjct: 283 RDNGYQEVHTPQLIDKSLWEKSGHWDKFGDVMFTTTS-GDRDYAVKPMNCPAHIQIYNQG 341

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYRNLP    +     R+E      G+MR R F+  D + F  TPE  +   +     
Sbjct: 342 LKSYRNLPLRLAEFGSCHRNEPSGTLHGIMRVRNFVQDDGHIF-CTPEQIQDEVSTFIDL 400

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G + I ++  + P     S E    ++    +   +K+ +      E   + 
Sbjct: 401 TFNVYKYFGFEKINIKLSTRPKKRVGSDEVWDKSEIALVEALNAKNIVWELQEGEGAFYG 460

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G        +S+P  +
Sbjct: 461 PKIEF---------------------------ILKDCLDRQWQCGT---LQVDFSMPKRL 490

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A F   +  K   V +    +G++     ++   ++G    W   ++P +  +INI   
Sbjct: 491 GAQFIDENSVKKTPVILHRAIMGSLERFLGILIEHYEGAYPCW---LSPIQAVIINI--- 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +        I  +L K G  V  D   E++  +     L  +P  ++VG + +   +V 
Sbjct: 545 SEKHAKFIVDIVKKLKKQGLRVISDLRNEKVSFKIREHSLQRYPYILVVGDREMEKGQVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R       MS+   I   +  
Sbjct: 605 VRQRGGKDLGAMSVGTFIKKVNQE 628


>gi|330816669|ref|YP_004360374.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327369062|gb|AEA60418.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 635

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 148/447 (33%), Gaps = 45/447 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD    + +L L    + + S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLAKQLDLF--HMQEESPGMVFWHPKGWTLWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M        +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESI-AFNELAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++    P     + E    A+ G      +       +P E   +   
Sbjct: 405 SVYKDFGFDQISIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLEWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G          LP  + A
Sbjct: 465 IEY---------------------------HIKDALGRSWQCGT---LQLDMVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   V +    +G+M     ++   H G    W   +AP ++ ++NI    +
Sbjct: 495 EYVAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPSW---LAPVQVVVMNIA---E 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +    +   L K G  V  D   E+I  +     L   P  ++ G K      V ++
Sbjct: 549 NQAEYVRSLSQSLQKQGLRVEADLRNEKISYKIREHTLEKVPYLLVAGDKEREAQTVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R       M +E  +          +
Sbjct: 609 ARGGVDLGVMPVEAFVERLQQDLRAFK 635


>gi|71908290|ref|YP_285877.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
 gi|123733181|sp|Q47CM4|SYT_DECAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71847911|gb|AAZ47407.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
          Length = 638

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 152/440 (34%), Gaps = 43/440 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +      +   + G+  W P G      +   +R     
Sbjct: 231 YLHMLEE----AEKRDHRRLGKQYDLFHMQDEAPGLVFWHPKGWAIWQEIEGYMRAVYRN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG ++ Y   M   +  N +     P +      +F + ++
Sbjct: 287 NGYQEVRCPQILDKSLWEKSGHWEHYKDNMFTTSSEN-RDYAVKPMNCPGHVQVFNAGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F+  D + F  T +  +           
Sbjct: 346 SYRELPLRYGEFGSCHRNEPAGALHGLMRVRGFVQDDGHIF-CTEDQIESEVTAFNALVK 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   + ++    P     + +    A+    Q   +       +P E       
Sbjct: 405 KVYADFGFNDVAVKLALRPDSRVGADDVWDRAEDALRQGLRASGLEWTELPGEG------ 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A         + D++  + +     ++       G +Y        
Sbjct: 459 --------------AFYGPKIEFHIRDAIGRSWQCGTMQVDFSMPGRLGAEY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D +   V +    +G++     ++  +  G   +W   +AP ++ ++NI    +   
Sbjct: 498 GADDTRKVPVMLHRAILGSLERFIGILIENFAGALPLW---LAPVQVVVLNI---SEKQA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L   G     D   E+I  +     L   P Q++VG K  +D  V ++ R 
Sbjct: 552 DYAAEVAQKLHSAGFRAEADLRNEKITYKIREHSLNRLPYQLVVGDKEKADGLVAVRTRG 611

Query: 423 TGIREDMSLEEVINYASHRF 442
                 M ++ +I       
Sbjct: 612 GQDLGQMPVDVLIKRLQEEV 631


>gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166223349|sp|A6SY30|SYT_JANMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151280543|gb|ABR88953.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 635

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 157/443 (35%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L        + + G+  W P G      V   +R+    
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDFF--HFQEEAPGLIFWHPKGWSIWQQVEQYMRKVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +D+Y + M  + +  +++    P +      I+ S ++
Sbjct: 287 NDYQEVKAPQILDRGLWEKTGHWDNYRENMF-VTESENRSYALKPMNCPGHVQIYNSDMR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F  T E             +
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPSGALHGMMRVRGFTQDDGHIF-CTEEQIAEEVTAFHAQAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G ++I ++    P     + E   +A+        +       +P E   +   
Sbjct: 405 AVYAAFGFENIDVKLALRPDSRIGTEESWDIAEESLRSALRACGVSWTELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                       L DSL    +V    I+       G +Y    +   
Sbjct: 465 IEY--------------------HLKDSLGRAWQVGTVQIDPSMPGRLGAEYVAVDNT-- 502

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   + +    +G++     ++   + G   +W   +AP +I+++NI        
Sbjct: 503 -----RKTPIMLHRAIVGSLERFIGILIEHYAGALPLW---LAPVQIAVLNI---SDAQA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L K G  V  D   E+I  +     +   P  +++G K      V ++ R 
Sbjct: 552 EYAQAVAQNLKKQGFRVHLDLRNEKITYKIREHSVQKLPYIIVIGDKERDAGTVAVRARG 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M ++ +++  +      
Sbjct: 612 NVDLGVMPVDLLVDRLNSEIDAK 634


>gi|329895719|ref|ZP_08271123.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328922195|gb|EGG29550.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 641

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 156/448 (34%), Gaps = 50/448 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L      + + G+  W P G      +   +R  Q + 
Sbjct: 230 QYLNRIAEAEKRDHRRIGKQLDLF--HTQEEAPGMVFWHPKGWTVYQVIEQYMRNRQRQE 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW +SG  D +G +M  L    D+     P +      +F   +KS
Sbjct: 288 GYKEIKTPQVVDMTLWHKSGHADKFGDDMFMLKAE-DREFAVKPMNCPCHVQVFNQGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F   DA+ F  T +  +   ++       
Sbjct: 347 YRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQPEVSRFIDFLHG 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   +  R  + P     S E    A+        + +     +P E   +   I
Sbjct: 406 VYEDFGFNEVIYRLSTRPEKRVGSEEDWDRAEKALADALDAHNLPWELLPGEGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--M 298
             +                                     +G ++  GT    +S+P  +
Sbjct: 466 EFSLKDC---------------------------------IGRVWQLGTIQVDFSMPGRL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   DG +   V +    +G+      ++    +G+   W   +AP +++++NI   
Sbjct: 493 DAQYVAEDGARKTPVMLHRAILGSFERFIGILIEHFEGRFPTW---LAPEQVAVMNITDK 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  + +   L+  G     D   E+IG +     L   P  ++VG K V    V 
Sbjct: 550 ---QGEFTQNVVDYLNNSGFRAIADLRNEKIGFKIRERTLAKIPYLLVVGDKEVETQSVA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M+L +   Y      + 
Sbjct: 607 VRTRDGKDLGTMTLADFAEYLRQDVGSR 634


>gi|312961943|ref|ZP_07776440.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283753|gb|EFQ62337.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 640

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 152/447 (34%), Gaps = 45/447 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLNLF--HLQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      N +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTQSEN-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T E  +          + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQMQAESAAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E    A+        S        P E   +   I 
Sbjct: 407 YRDFGFTEVEMKLSTRPEKRVGSDELWDRAEAALAAALDSAGLAYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  + A +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + H V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKHPVMLHRAILGSFERFVGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFAAEVEKTLNESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN-RP 447
                  M + +   + +   S   RP
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRRGRP 637


>gi|288574759|ref|ZP_06393116.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570500|gb|EFC92057.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 630

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 165/441 (37%), Gaps = 42/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H+   G   + P G   ++ +     +   + G
Sbjct: 227 YVTRMEEAKKRDHRKIGRELGLFS--LHKEGPGFPFFHPKGMVVINTLIDFWSKVHRKNG 284

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             ++  P + + DLW++SG +D Y + M    + +D+     P +      +++S + SY
Sbjct: 285 YDQIRTPMILNRDLWIQSGHWDHYRENMY-FTEIDDQPYAIKPMNCPGGILVYKSDLHSY 343

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R E      G+MR R F   DA+ +  TP+  K   + +      I
Sbjct: 344 RDLPLRLGELGIVHRHEKSGVLHGLMRVRCFTQDDAHHY-CTPDQIKDEVSLIMDMVDYI 402

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G K   +   + P     S E   LA+    +V   +       P +   +   I
Sbjct: 403 YSEVFGFKF-HVELSTRPDNSMGSDEMWELAEKSLREVLEERGTTYVLNPGDGAFYGPKI 461

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                                          +    R  + G I     +       T+ 
Sbjct: 462 DF---------------------------HLEDCIGRTWQCGTI-QLDFQMPEKFDVTYI 493

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+DGK+H    +    +G++     ++   + G    W   +AP ++ ++ +        
Sbjct: 494 GSDGKEHRPAMLHRTILGSIERFLGILIEHYAGAFPFW---IAPVQVKVLAVGDD---HV 547

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + + A L      V  D   E++G +   A +   P  ++VG K +    V ++ R 
Sbjct: 548 DYAKDLKALLQDREYRVELDCRDEKLGRKIRDAQMEKVPFMLVVGDKELETGTVSVRDRS 607

Query: 423 TGIREDMSLEEVINYASHRFS 443
            G +  MS E+++     +FS
Sbjct: 608 EGDKGSMSKEDLLELLKGQFS 628


>gi|19112749|ref|NP_595957.1| mitochondrial proline-tRNA ligase (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74676105|sp|O74765|SYPM_SCHPO RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|3687477|emb|CAA21147.1| mitochondrial proline-tRNA ligase (predicted) [Schizosaccharomyces
           pombe]
          Length = 425

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 132/415 (31%), Positives = 207/415 (49%), Gaps = 29/415 (6%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           ++L++  G I     GI+ +LPLG +  + +  ++       GA  +S+  L S ++W +
Sbjct: 28  NQLLIDMGFIQPSMPGIFQYLPLGLRVQNKICDLLHISMRSLGASAISLAHLSSKEIWEK 87

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           SGR+   G E+ RL DRND+ M   PTHEE +T    + I S + LP   YQI  KFRDE
Sbjct: 88  SGRWQKTGSELFRLHDRNDREMCLAPTHEEDVTRTMATIIDSQKQLPIRVYQIGRKFRDE 147

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           LRPR G++R REF+MKD Y+FD+    +  +Y  +  +Y   F  +GL  + ++A +G I
Sbjct: 148 LRPRGGLLRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFVMVKAATGNI 207

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           GG+LSHEF      GE  ++                              T         
Sbjct: 208 GGNLSHEFHYRHPVGEDVIYTC----------------------PSCHYSTNSEMLDLSK 245

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  +      ++  S   IEVGH FY G  YS   +AT +  + K   + MG YGIG  
Sbjct: 246 TSSDISCPNCNDQLTSTTAIEVGHAFYLGKIYSSKFNATVEVKN-KQEVLHMGCYGIGVS 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-VGCD-VF 380
           R++AAV   + D KG++WP S+AP+K+ ++    +      + E +Y   +  VG D V 
Sbjct: 305 RLIAAVAHVTKDAKGLVWPSSIAPWKVLVVPTSDN---HIQSAETVYDATANVVGFDNVL 361

Query: 381 WDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +D   +  G +   A+L+G+P  ++VGS+F  +   EI  R +G R  +  + +
Sbjct: 362 LEDRQNRAFGYKMRDAELIGYPFVIVVGSRFQEEGICEIIVRSSGERYKLDKDSL 416


>gi|282850470|ref|ZP_06259849.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579963|gb|EFB85367.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 636

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 156/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   +I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLF--VIKEEGPGFPFFLPKGMALRNELENFWREVHHDFD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S  LW  SG +D Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILSKHLWETSGHWDHYRENMYTTI-IDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L P+  +    K+   + RI
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFML-PDQMQTELMKVIELFDRI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + GLK   +   + P            A         +K       P +         
Sbjct: 409 YSQFGLKY-HVELSTKPDNAMGDDAIWEQATDALRNAIEAKGIPYVINPGDGA------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I              + G
Sbjct: 461 ----------FYGPKLDYHIEDSLG----------RTWQCGTI-QLDMNLPERFQIEYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G+M     ++   + G    W   +AP ++ ++ I    +   +
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGILTEHYAGAFPTW---MAPVQVKILPI---SEKHVE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++    
Sbjct: 554 YAKELAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  EE  N         
Sbjct: 614 DELGSVPFEEFFNSIKIEIKER 635


>gi|167769368|ref|ZP_02441421.1| hypothetical protein ANACOL_00694 [Anaerotruncus colihominis DSM
           17241]
 gi|167668336|gb|EDS12466.1| hypothetical protein ANACOL_00694 [Anaerotruncus colihominis DSM
           17241]
          Length = 635

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 158/452 (34%), Gaps = 50/452 (11%)

Query: 2   RRSKY--FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +L+E  R D      +L L    I++   G   + P G    + + +  R
Sbjct: 224 KASELSDYLHMLEEAKRRDHRKLGRELDLFD--IYEEGPGFPFFFPKGMILRNLLESFWR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + +LW  SG +D Y   M      +D+     P +      ++
Sbjct: 282 EEHQKHGYQEIRTPLILNEELWHRSGHWDHYKDNMYTTK-IDDRDYAIKPMNCPGGILVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  + SYR+LP    ++ +  R EL     G+MR R F   DA+ F +TP+  +     +
Sbjct: 341 KRRMNSYRDLPQRLAELGIVHRHELSGALHGLMRVRCFTQDDAHIF-MTPDQIEAEVLGV 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+   G     +   + P     S E    A     +              +  
Sbjct: 400 INLIDSIYRVFGFDYF-LELSTRPEDSMGSEEQWETATAALRKALEDNGRPYTVNEGDGA 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKY 294
            +   I                               +    R  + G I   F    ++
Sbjct: 459 FYGPKIDF---------------------------HLRDSIGRTWQCGTIQLDFQMPERF 491

Query: 295 SLPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
            L     + G+DG+ H   M      G++     ++   + G   +W   +AP +I ++ 
Sbjct: 492 DLA----YIGSDGERHRPVMVHRTAFGSIERFIGILIEHYAGAFPLW---LAPVQIKVLP 544

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +           + +   L++ G  +  D   E++G +   A L   P  +++G K    
Sbjct: 545 VT---DEHIPYAQSVADTLTRAGLRIELDSRNEKVGYRIREAQLQKIPYMLVLGGKEAES 601

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +V ++ R  G    M L + +          
Sbjct: 602 GEVAVRDRRDGKTTTMLLADFVEKMKTEVETK 633


>gi|315634189|ref|ZP_07889478.1| threonine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315477439|gb|EFU68182.1| threonine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 643

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +  +  
Sbjct: 232 YLQRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +YG  M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I ++  + P     + E    A+ G                 E   +   I 
Sbjct: 408 YSTFGFTNIFVKLSTRPEKRIGADEMWDRAEEGLANALKHNGLEYEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G I      ++LP  ++A++
Sbjct: 468 FAL---------------------------RDCLDREWQCGTI---QLDFALPGRLNASY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G++     +I   + G    W   +AP +  ++NI       
Sbjct: 498 VAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +++  +LS  G  V  D   E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 552 SEYVQQVAKQLSDAGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIEAGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                   ++EE +     +  N 
Sbjct: 612 KGQDLGTFTVEEFLEILKKQVRNR 635


>gi|17546296|ref|NP_519698.1| threonyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|22654118|sp|Q8XZ29|SYT_RALSO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17428593|emb|CAD15279.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 635

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 153/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + +      + + + G+  W P G +    V   +R   
Sbjct: 229 EAYLHMLEE----AEKRDHRKLGKLLDLFHLQEEAPGMVFWHPKGWQIWQAVEQYMRGRL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW  SG +++Y + M  + +   +     P +      IF   
Sbjct: 285 AGAGYSEVRTPQVMDRGLWERSGHWENYKENMF-VTESEKREYAIKPMNCPGHVQIFNHG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    +     R+E      G+MR R F+  DA+ F  T              
Sbjct: 344 LRSYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEGQIMAEAKDFNDL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G +++ ++    P     + E    A+ G      +       +P E   + 
Sbjct: 403 AFSIYEDFGFENVAVKLALRPDKRAGTDEIWDHAEEGLRTALRACGVEWEELPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                               K    R  + G +          + A
Sbjct: 463 PKVEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   V +    +G+      ++  +H G   +W   +AP ++ +++I     
Sbjct: 495 EYVAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLW---LAPEQVVIMSIA---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E +   L K G     D   E+I  +     L   P  V+VG K    ++V ++
Sbjct: 549 AHAEYAESVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M +   +    + F+N 
Sbjct: 609 ARGNVDLGSMPVSTFVERLQNDFANK 634


>gi|24373852|ref|NP_717895.1| threonyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|73919825|sp|Q8EER9|SYT_SHEON RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24348259|gb|AAN55339.1|AE015671_6 threonyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 642

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S Y   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTYLARLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVQAEVSSCIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q   + +     +P E   +  
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRANNIEFTILPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPSRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M +E+       + S
Sbjct: 609 RTRDGVDLGKMRIEDFAAKIHQQIS 633


>gi|71275167|ref|ZP_00651454.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|170731158|ref|YP_001776591.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|238687955|sp|B0U5E3|SYT_XYLFM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71163976|gb|EAO13691.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|167965951|gb|ACA12961.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
          Length = 635

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 153/444 (34%), Gaps = 43/444 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ + ++  LQ    DAE   H+ + +      + +   G+  W P G      +   IR
Sbjct: 228 KQLEAYMQRLQ----DAEKRDHRKIGKAQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIR 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                +G  E+  P +    LW +SG +D+Y + M    D   +     P +      +F
Sbjct: 284 RVYRNSGYGELRCPQILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVKPMNCPGHVQVF 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              + SYR+LP  + +     R+E      G++R R F   D + F  T    +      
Sbjct: 343 NQGLHSYRDLPIRYGEFGACHRNEPSGALHGLLRVRGFTQDDGHIF-CTEAQIEAEVTAF 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L+++   G ++I ++    P            A+        + +     +P E  
Sbjct: 402 HRQALQVYADFGFENIQIKIALRPDKRLGDSLSWDKAEAALRAALSACEVEWQELPGEGA 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L D++    ++    ++       G +Y   
Sbjct: 462 FYGPKIEY--------------------HLKDAIGRTWQLGTIQVDFMMPGRLGAEYVDE 501

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                     + H V +    +G+M     ++   + G   IWP  +AP ++ + NI   
Sbjct: 502 -------RSQRRHPVMLHRAIVGSMERFIGILIEHYAG---IWPTWLAPVQVVIANIT-- 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  E+++  L   G  V  D   E+IG +     L   P  ++VG +   +  V 
Sbjct: 550 -DAQYEYAEQVHKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVA 608

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++         MS+   +      
Sbjct: 609 VRTCSREDLGAMSISAFVERLQTE 632


>gi|294141074|ref|YP_003557052.1| threonyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293327543|dbj|BAJ02274.1| threonyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 642

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 158/447 (35%), Gaps = 45/447 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G +    +   IR++
Sbjct: 227 KALKVHLNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWRLFLELETFIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y + M      N +     P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTKSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVQQEVSACIQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G K+I ++  + P       E    A+    Q   + D     +P E   +
Sbjct: 403 MVYDTYETFGFKNIVVKLSTRPEQRIGDDEMWDRAEEALKQALTANDIEFEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   +AP ++ ++NI  
Sbjct: 493 LGATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTW---LAPMQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +++   L + G     D   E+IG +     L   P  ++VG + + + +V
Sbjct: 550 KQS---NYADEVVNLLKENGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       M +EE     + + S
Sbjct: 607 AVRTRDGVDLGKMRIEEFAAKINKQIS 633


>gi|255659698|ref|ZP_05405107.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260848272|gb|EEX68279.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 639

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 162/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    R+   R G
Sbjct: 233 YLHMLEEAKKRDHRKLGKQLDLFS--LHEEGPGFPFFHPNGMIVRNELINYWRDVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      + +     P +      ++ S   SY
Sbjct: 291 YQEIKTPIILNRQLWETSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGGMLVYNSKQHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+ R R F   DA+ F +TP+  +         +  +
Sbjct: 350 RDLPLRLGELGLVHRHEKSGELHGLFRVRNFTQDDAHLF-VTPDQVEQEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  GL  +     + P     + E   LA  G  +    +         +   +   I 
Sbjct: 409 YNTFGLTYV-AELSTRPDDSMGTDEDWELATNGLRKALEHRGLDYIVNEGDGAFYGPKID 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I  +  +     + T+ G
Sbjct: 468 F---------------------------HLKDSIGRTWQCGTI-QYDMQMPEKFNLTYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G++     ++  ++ G    W   +AP +  ++ I        D
Sbjct: 500 EDGEKHRPIMLHRVVYGSIERFIGILIENYAGAFPTW---LAPVQARILPITDK---QAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++  +G  +  DD  E+IG +   + +L  P  ++VG + ++D  V ++    
Sbjct: 554 YAYELRKKMFDLGLRIEVDDRSEKIGKKIRESQMLKTPYSLVVGDQEMADGTVAVRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E M +E+ I Y   + +  
Sbjct: 614 QQSETMKVEDFIAYLQEQIATK 635


>gi|293604689|ref|ZP_06687089.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292816858|gb|EFF75939.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 650

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 150/446 (33%), Gaps = 39/446 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E  R D      +L L        + G+  W P G      V   +R   N 
Sbjct: 234 EAYLHMLEEAERRDHRKIGRELDLF--HFQDEAPGLIFWHPKGWALWQQVEQYMRAIYNN 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D+Y + M      N +     P +      IF + + 
Sbjct: 292 NGYQEVKAPQILDISLWKKTGHWDNYRENMFTTESEN-RVYGLKPMNCPGHVQIFNAGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F  T E  +           
Sbjct: 351 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEEQLQDECADFTALLQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   +  +  + P     S E    A+    +            P E   +   
Sbjct: 410 KVYRDFGFTEVLYKVATRPEKRIGSDEVWDTAEQALMESLRRTGCEFEISPGEGAFYGPK 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                       L D++  + +     ++       G +Y        
Sbjct: 470 VEY--------------------TLKDAIGRHWQCGTIQVDFSMPVRLGAEY-------V 502

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D +   V +    +G++     ++  +H G     P  +AP +  +  I    +   
Sbjct: 503 DQNDQRRPPVMLHRAILGSLERFIGMLIENHAGAM---PPWLAPVQAVVCCI---SEPSA 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++   
Sbjct: 557 DYAAEITQSLKKQGFRVESDLRGEKITRKIREHSLQKVPYILVVGDKEKQNGTVAVRGLG 616

Query: 423 TGIREDMSLEEVINYASHRFSNNRPV 448
                 ++ +E +   S   S  R V
Sbjct: 617 GLDLGAIAYDEFVARLSEDVSARRDV 642


>gi|255280775|ref|ZP_05345330.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255268712|gb|EET61917.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 642

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 162/445 (36%), Gaps = 47/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+     G   +LP G    + +    RE   + G
Sbjct: 230 YITRMEEAKKRDHRKLGKQLGLF--MMRDEGPGFPFFLPNGMIVKNALLDYWREIHRKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y + M      +D      P +      +++S  +SY
Sbjct: 288 YVEISTPIMLNRQLWETSGHWDHYRENMYT-TVIDDTDFAIKPMNCPGGILVYQSEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +I L  R E   +  G+MR R F   DA+ F +TPE        +      +
Sbjct: 347 RDLPLRMGEIGLVHRHEKSGQLHGLMRVRCFNQDDAHIF-MTPEQICDEIKGVVKLIDEV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E   +A  G                       D+  
Sbjct: 406 YQLFGFKY-HVELSTRPENSMGSDEDWEMATDGLRSALD-----------------DLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              + E   A Y    D H E              R  + G I   F    ++    +  
Sbjct: 448 DYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF----NCE 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  + +     G++     ++     G    W   ++P ++ ++ I      
Sbjct: 494 YIGADGEKHRPIMIHRVVFGSVERFIGILIEHFAGAFPTW---LSPEQVRVLPI---SDK 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+ A L++ G     D   E+IG +   A L   P  ++VG+K   D KV ++ 
Sbjct: 548 YLDYADKVNAALNENGIRSSVDTRAEKIGYKIREARLAKVPYMLVVGAKEEEDGKVSVRS 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G     +L++ I          
Sbjct: 608 RFLGDEGQKNLDDFIAAIKEEIRTR 632


>gi|71898248|ref|ZP_00680422.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
 gi|71731987|gb|EAO34044.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
          Length = 635

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 153/444 (34%), Gaps = 43/444 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ + ++  LQ    DAE   H+ + +      + +   G+  W P G      +   IR
Sbjct: 228 KQLEAYMQRLQ----DAEKRDHRKIGKAQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIR 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                +G  E+  P +    LW +SG +D+Y + M    D   +     P +      +F
Sbjct: 284 RVYRNSGYGELRCPQILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVKPMNCPGHVQVF 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              + SYR+LP  + +     R+E      G++R R F   D + F  T    +      
Sbjct: 343 NQGLHSYRDLPIRYGEFGACHRNEPSGALHGLLRVRGFTQDDGHIF-CTEAQIEAEVTAF 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L+++   G ++I ++    P            A+        + +     +P E  
Sbjct: 402 HRQALQVYADFGFENIQIKIALRPDKRLGDSLSWDKAEAALRSALSACEVEWQELPGEGA 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L D++    ++    ++       G +Y   
Sbjct: 462 FYGPKIEY--------------------HLKDAIGRTWQLGTIQVDFMMPGRLGAEYVDE 501

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                     + H V +    +G+M     ++   + G   IWP  +AP ++ + NI   
Sbjct: 502 -------RSQRRHPVMLHRAIVGSMERFIGILIEHYAG---IWPTWLAPVQVVIANIT-- 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  E+++  L   G  V  D   E+IG +     L   P  ++VG +   +  V 
Sbjct: 550 -DAQYEYAEQVHKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVA 608

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++         MS+   +      
Sbjct: 609 VRTCSREDLGAMSISAFVERLQTE 632


>gi|83748297|ref|ZP_00945322.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725029|gb|EAP72182.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 635

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 150/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYSEVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T                
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEGQIMAEAKDFNDLAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +++ ++    P     + E    A+ G      +       +P E   +   
Sbjct: 405 SVYEDFGFENVAVKLALRPDKRAGTDEIWDHAEEGLRTALRACGVEWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                               K    R  + G +          + A +
Sbjct: 465 VEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+      ++  +H G   +W   +AP ++ +++I       
Sbjct: 497 VAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLW---LAPEQVVVMSIA---DAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G     D   E+I  +     L   P  V+VG K    ++V ++ R
Sbjct: 551 AEYAETVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    +  +N 
Sbjct: 611 GNVDLGSMPVSAFVERLQNDLANK 634


>gi|148548433|ref|YP_001268535.1| threonyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166225483|sp|A5W5E1|SYT_PSEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148512491|gb|ABQ79351.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           putida F1]
          Length = 640

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M   +  + +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFTTSSES-RDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T E  K          L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEEQVKKEAADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+T                P E   +   I 
Sbjct: 407 YKDFGFSDIAMKLSTRPAKRVGSEELWDRAETALADALNESGLEWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++   + G   ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLIEHYAG---VFPAWLAPTQAVIMNITDK---QTD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + + +   +   S  
Sbjct: 613 ADLGSMPVAQFVELLTQAVSRR 634


>gi|229591579|ref|YP_002873698.1| threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|259516637|sp|C3JZN7|SYT_PSEFS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229363445|emb|CAY50645.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 640

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 152/447 (34%), Gaps = 45/447 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLNLF--HLQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      N +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTQSEN-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T E  +          + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQMQAESAAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E    A+        S        P E   +   I 
Sbjct: 407 YRDFGFTEVEMKLSTRPEKRVGSDELWDRAEAALAAALDSAGLAYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  + A +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + H V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKHPVMLHRAILGSFERFVGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFAAEVEKTLNESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN-RP 447
                  M + +   + +   S   RP
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRRGRP 637


>gi|118595089|ref|ZP_01552436.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
 gi|118440867|gb|EAV47494.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
          Length = 635

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 154/445 (34%), Gaps = 44/445 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L    +  ++ G+  W P G      V   +R+     
Sbjct: 230 EYLYRLEEAEKRDHRKLGKQLDLF--HMQDNAPGMVFWHPKGWSLWLAVEDYMRQMFKDY 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+    LW +SG +++Y   M   A  N +     P +     ++F + + S
Sbjct: 288 GYKEIKTPTIIDKSLWEKSGHWENYQDNMFTTASEN-RVYAVKPMNCPGHVEVFNNTLHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F   DA+ F  T +  K           +
Sbjct: 347 YRDLPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQIKEEVMVFNDMLFK 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   G K I +   + P     S E    A+                 P E   +   I
Sbjct: 406 AYADFGFKDIVVMLSTRPEKRVGSDEVWDRAEEALESALKETGLSYTMQPGEGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
                                          K    R  + G I      ++LP  + A 
Sbjct: 466 EYTL---------------------------KDSLGRVWQCGTI---QLDFNLPKRLGAE 495

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D  + + V +    +G+M     ++   + G   +W   +AP ++ L+NI      
Sbjct: 496 YIDEDNSRKNPVMLHRAIVGSMERFIGILIEHYAGSLPLW---LAPIQVVLLNI---SDA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++  + +     + G     D   E+I  +     +   P  V++G + + + +V ++ 
Sbjct: 550 QKEYAKTLETIFKEKGIRCESDLRNEKITYKIREHSMQRIPYMVVLGDREMQEKQVTVRT 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           +       M+++  I + +      
Sbjct: 610 QSGEDLGAMAIDAFIQHLNSDIEKK 634


>gi|332525938|ref|ZP_08402079.1| threonyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109489|gb|EGJ10412.1| threonyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 635

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 147/448 (32%), Gaps = 49/448 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      + +HS G   W P G      V   +R   
Sbjct: 229 QGYLRMLEE----AEKRDHRKLGRELDLFHLDEHSPGTVFWHPKGWTVWQEVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y + M        +     P +      IF+  
Sbjct: 285 RDNGYQEVKGPQILDKALWEKTGHWDKYRENMFTTESEK-RDYALKPMNCPGHILIFKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  + +     R+E      G+MR R F   D + F                 
Sbjct: 344 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEDMILGECV-AYTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     S      A+    +            P +   + 
Sbjct: 403 LQKVYRDFGFTDILYKVATRPEKRIGSDAIWDKAEEALIESLKRSGCDYVIAPGDGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G +      +S+   +
Sbjct: 463 PKIEYTL---------------------------KDAIGRQWQCGTM---QVDFSMAERL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   DG + H V +    +G++     ++   H G   +W   +AP +  + +I   
Sbjct: 493 DAEYVAEDGSRRHPVMLHRAIVGSLERFIGILIEQHAGALPVW---LAPVQAVVASIT-- 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++   L K G  V  D   E+I  +     +   P  ++VG K  ++  V 
Sbjct: 548 -DSQADYAAEVAKSLQKQGLRVHLDLRNEKINYKIREHSVQKAPFILVVGDKEKANGAVA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M L +     +   +  
Sbjct: 607 VRARGNLDLGVMPLADFQQKIASDIAAK 634


>gi|325276812|ref|ZP_08142513.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324098050|gb|EGB96195.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 640

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M   +  + +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFTTSSES-RDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T E  K          L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEEQVKKEAADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+                 P E   +   I 
Sbjct: 407 YKDFGFSDIAMKLSTRPAKRVGSEELWDRAEGALADALNESGLEWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++   + G   ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLIEHYAG---VFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALQVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + + +   +   S  
Sbjct: 613 ADLGSMPVAQFVELLNQAVSRR 634


>gi|116515089|ref|YP_802718.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256943|gb|ABJ90625.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 422

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 148/430 (34%), Positives = 227/430 (52%), Gaps = 23/430 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   KY L  L+E P++ E  SH+LMLR+GMI   S GIY+WLP G + +  +  II   
Sbjct: 1   MYTKKYLLSTLKEKPKNIESISHQLMLRSGMIRMLSSGIYTWLPTGYRIIKKITKIISSI 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G +E+ +P +Q  +LW +SGR   YG+E++++ DR +K  +  PTHEE +  I + 
Sbjct: 61  LNNHGCMEICMPIIQPENLWKKSGRKKLYGEELIKITDRRNKKYVLSPTHEEAINYICQQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP TFYQIQ KFRDE+RPRFGV+R+ EFLMKDAYSF +  +  K +Y  M   
Sbjct: 121 EIHSYKQLPITFYQIQKKFRDEIRPRFGVIRTIEFLMKDAYSFHINKDSLKKTYENMKNI 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF +L L    ++A S  +GG +S EF  +++ GE ++   K        +E  +  
Sbjct: 181 YIKIFKKLKLNFKIVKAHSKIMGGSISDEFHAISEMGENKIIFLKKSNYAFNYNEFNEKK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  +                        E K +    IE+GHIF    KYS   + 
Sbjct: 241 KKFKNYLL----------------------QKEKKLIKKNSIEIGHIFQIEKKYSKNTNF 278

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +    K   + MG YGIG  R+++++IE +HD  GIIWP+ +APF++ ++ I  +   
Sbjct: 279 YIQDKKNKKKLLNMGCYGIGINRIISSIIEQNHDKYGIIWPNCIAPFQVFILPINMYKNK 338

Query: 361 CRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 K   +       DV +D+  E +G  FA  +L+G P  +++    ++  KVE+ 
Sbjct: 339 KIKKIAKKLYKKLINKNIDVLFDNRNESLGKMFADMNLIGIPFGILISKNTITSKKVELY 398

Query: 420 HRLTGIREDM 429
            R    ++ +
Sbjct: 399 SRKKNSKKKV 408


>gi|28199783|ref|NP_780097.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182682533|ref|YP_001830693.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130161|sp|Q87AB2|SYT_XYLFT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691115|sp|B2I9P8|SYT_XYLF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28057904|gb|AAO29746.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632643|gb|ACB93419.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578811|gb|ADN62780.1| threonyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 635

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 153/444 (34%), Gaps = 43/444 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ + ++  LQ    DAE   H+ + +      + +   G+  W P G      +   IR
Sbjct: 228 KQLEAYMQRLQ----DAEKRDHRKIGKAQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIR 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                +G  E+  P +    LW +SG +D+Y + M    D   +     P +      +F
Sbjct: 284 RVYRNSGYGELRCPQILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVKPMNCPGHVQVF 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              + SYR+LP  + +     R+E      G++R R F   D + F  T    +      
Sbjct: 343 NQGLHSYRDLPIRYGEFGACHRNEPSGALHGLLRVRGFTQDDGHIF-CTEAQIEAEVTAF 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L+++   G ++I ++    P            A+        + +     +P E  
Sbjct: 402 HRQALQVYADFGFENIQIKIALRPDKRLGDSLSWDKAEAALRAALSACEVEWQELPGEGA 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L D++    ++    ++       G +Y   
Sbjct: 462 FYGPKIEY--------------------HLKDAIGRTWQLGTIQVDFMMPARLGAEYVDE 501

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                     + H V +    +G+M     ++   + G   IWP  +AP ++ + NI   
Sbjct: 502 -------RSQRRHPVMLHRAIVGSMERFIGILIEHYAG---IWPTWLAPVQVVIANIT-- 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  E+++  L   G  V  D   E+IG +     L   P  ++VG +   +  V 
Sbjct: 550 -DAQYEYAEQVHKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVA 608

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++         MS+   +      
Sbjct: 609 VRTCSREDLGAMSISTFVERLQTE 632


>gi|330810593|ref|YP_004355055.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378701|gb|AEA70051.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 640

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 152/449 (33%), Gaps = 45/449 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + S G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEESPGMVFWHPNGWTLYQVLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      N +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTQSEN-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T E  +          + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRAFTQDDAHIF-CTEEQMQAESAAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E    A+        S        P E   +   I 
Sbjct: 407 YRDFGFTEVEMKLSTRPEKRVGSDELWDRAEAALAAALDSAGLAYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  + A +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + H V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKHPVMLHRAILGSFERFVGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFAAEVEKTLNQSGFRAKSDLRNEKIGFKIREHTLLKVPFLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN-RPVL 449
                  M + E   + +   S   RP L
Sbjct: 611 EGADLGSMPVAEFAEFLAQAVSRRGRPDL 639


>gi|104781106|ref|YP_607604.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123079219|sp|Q1IC15|SYT_PSEE4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|95110093|emb|CAK14798.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 640

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 146/444 (32%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M   +  N +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFTTSSEN-RDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +  K          L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEDQVKKEAADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E    A+                 P E   +   I 
Sbjct: 407 YKDFGFTDVAMKLSTRPAKRVGSEELWDRAEGALADALNESGLEWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G         +LP  + A++
Sbjct: 467 FTL---------------------------RDCLGRNWQCGT---LQYDPNLPERLDASY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D      V +    +G+      ++   + G   ++P  +AP +  ++NI       
Sbjct: 497 IAEDNSRVRPVMLHRAILGSFERFIGMLIEHYAG---VFPAWLAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKALNGSGFRAKSDLRNEKIGFKIREHTLLRVPYLLVIGDREVETQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +     S   S  
Sbjct: 611 EGADLGSMPVAQFAELLSQAVSRR 634


>gi|269468339|gb|EEZ80013.1| threonyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 630

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 156/443 (35%), Gaps = 49/443 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + +T     + + + G+  W   G      V   +R   
Sbjct: 229 KDYLYRLEE----AEKRDHRKIGKTQDLFHMQEEAPGMVFWHEKGWTLYQIVEQYMRSVF 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P L    LW +SG +D +G  M   +  N +     P +      I+   
Sbjct: 285 RDNDYKEVHTPQLIDRTLWEKSGHWDKFGDAMFTTSSEN-RDYAVKPMNCPAHIQIYNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F+  D + F  T    +   +     
Sbjct: 344 LKSYRDLPLRLAEFGSCHRNEPSGTLHGIMRVRNFVQDDGHIF-CTENQIQDEVSTFIDL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +++ ++  + P     S E    A+    +   +K         E   + 
Sbjct: 403 TFDVYKNFGFENVDIKLSTRPEKRVGSDEVWDRAEASLAEALDAKGIKWELQEGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G        +S+P  +
Sbjct: 463 PKIEF---------------------------VLKDCLDREWQCGT---LQVDFSMPERL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D  K   V +    +G++     ++   ++G    W   +AP +  ++NI   
Sbjct: 493 DAHYIAEDNSKQTPVMLHRAIVGSLERFVGILIEHYEGAFPSW---LAPIQAVILNI--- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +  +L K G  V  D   E+IG +     +  +P  ++VG + + + ++ 
Sbjct: 547 SEKQHDFVANVEKKLKKQGLRVISDLRNEKIGFKIREHSMQRYPYILVVGGREMENDEIS 606

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           ++ R       MS+E  +     
Sbjct: 607 VRKRGGEDLGSMSIEAFVKLVKE 629


>gi|146307004|ref|YP_001187469.1| threonyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166225482|sp|A4XTS1|SYT_PSEMY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145575205|gb|ABP84737.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWTVYQVLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M   A  N +     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFTTASEN-RDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +  K          L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEDQVKKEAADFIKLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+                 P E   +   I 
Sbjct: 407 YADFGFTDIAMKLSTRPAKRVGSEELWDRAEGALADALNESGLAWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G    W   +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLIEHYAGSFPAW---LAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +    L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAREAEKTLNQSGFRAKVDLRNEKIGFKIREHTLLKVPYLLVIGDREVETRSVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M LE+         S  
Sbjct: 613 VDLGSMPLEQFAAQLQQAVSRR 634


>gi|50086067|ref|YP_047577.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|73919764|sp|Q6F860|SYT_ACIAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49532043|emb|CAG69755.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 640

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQALEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEVRTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   D + F  T E             L +
Sbjct: 348 RDLPVRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDGHIF-CTKEQIGKEVADFIQLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           LA+        +        P E   +   I 
Sbjct: 407 YKDFGFEDVQMKLSTRPEKRVGDDRLWDLAEKSLADALDAAGLEWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A+F
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPIRLDASF 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D +    V +    +G+      ++   + G     P  +AP +  ++NI       
Sbjct: 497 VTEDNERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLAPVQACVMNIT---DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +AC+++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AEACQQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  ++      +  
Sbjct: 611 SGKNLGTMSIDAFVDLVKSAVAER 634


>gi|196008377|ref|XP_002114054.1| hypothetical protein TRIADDRAFT_58133 [Trichoplax adhaerens]
 gi|190583073|gb|EDV23144.1| hypothetical protein TRIADDRAFT_58133 [Trichoplax adhaerens]
          Length = 473

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 142/458 (31%), Positives = 242/458 (52%), Gaps = 36/458 (7%)

Query: 3   RSKYFLPILQ--ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
            S  F+P+++  +    A ++   ++   G++ Q   G+Y  LP+  +A+  +  ++ EE
Sbjct: 32  VSSLFIPMMRTSDQSASASVSRKTILENAGLLKQSRPGLYYILPVALRAMYKLIKVVDEE 91

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  ++  P L  ADLW  SGR+D+ G EM +L DR+++    GPTHEE ++++  +
Sbjct: 92  MTRIGGSKLGTPCLIPADLWQSSGRWDTLGAEMFKLKDRHNRHYCLGPTHEESISELVGT 151

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ S   +P   YQI  KFRDE+RPR G+ R+REF MKD YSFD+  E S +SY  +  +
Sbjct: 152 YLNSKNMMPLRLYQIDRKFRDEIRPRLGLRRAREFWMKDMYSFDIDKEASLNSYEIICEA 211

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF+RLGL  + + A+SG +GGD SHEF ++AD GE ++                   
Sbjct: 212 YVRIFNRLGLNVVKVVADSGAMGGDTSHEFHLIADDGEDEILIC---------------- 255

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS-ARGIEVGHIFYFGTKYSLPMS 299
                +   +        + DV  E       +NK +   RG+E+GH FY GTKYS   S
Sbjct: 256 -----DQCHKAMNMETLKSGDVMAECNLCEGKQNKNIQKYRGVEIGHAFYLGTKYSKAAS 310

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--- 356
            T+   +    YV+MGSYGIG  R++ A +E       I WP  + P+ I ++ + +   
Sbjct: 311 VTYTDENNCKVYVEMGSYGIGVTRLLDAALEVQSTCNKIRWPSVITPYNICIVPLGSPKD 370

Query: 357 -HDQVCRDACEKIYARLS--KVGCDVFWDDM---GEQ--IGSQFAVADLLGFPLQVIVGS 408
              Q      +++Y +L+  K+  +V  DD     +    G++   A LLG+P  +I+G 
Sbjct: 371 NSSQQLLQLAQQLYDKLAVGKLQNEVVIDDRIYLSKTVGPGTRLRQATLLGYPYLIILGK 430

Query: 409 KFV-SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + +     +E++ +L G ++++ ++ ++++    +   
Sbjct: 431 QALQKQGYIELEDQLNGSKQNIHIDNIVDHIQQVYEKR 468


>gi|319786721|ref|YP_004146196.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465233|gb|ADV26965.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 634

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K ++  ++E    AE   H+ + +      + + + G+  W P G      V   +R
Sbjct: 227 KQLKAYIQRIEE----AEKRDHRRIGKQQDLFHLQEEAPGLVFWHPKGWSVWQVVEQYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                TG  E+  P +    LW +SG +D+Y   M    +   +     P +      IF
Sbjct: 283 RVYRETGYGEVRCPQILDVSLWKKSGHWDNYQDNMF-FTESEKRTYAVKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              + SYR+LP  + +     R+E      G++R R F   D + F  T +  +      
Sbjct: 342 NQGLHSYRDLPIRYGEFGSCHRNEPSGALHGILRVRGFTQDDGHVF-CTEQQIESEVRAF 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L+++   G + I ++    P            A+        +       +P E  
Sbjct: 401 HAQALKVYTDFGFEDIQIKIALRPDNRLGDDATWDKAEDALRSALRASGVEWQELPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L D++    ++    ++       G      
Sbjct: 461 FYGPKIEY--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG------ 494

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   +  + H V +    +G+M     ++   H G+   W   +AP +  ++NI  
Sbjct: 495 --AEYVDENSQRRHPVMLHRAIVGSMERFIGILIEHHAGQFPAW---LAPVQAVVMNIT- 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              V  +   ++   L+  G  V  D   E+IG +     L   P  ++VG +   +  V
Sbjct: 549 --DVQAEYVNEVRKVLANQGFRVEADLRNEKIGFKIREHTLQRVPYLLVVGDREKENGAV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ R       MS+ +  +    +
Sbjct: 607 AVRTRSGEDLGTMSVSDFADTLRSQ 631


>gi|26989188|ref|NP_744613.1| threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|38258320|sp|Q88K27|SYT_PSEPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24984027|gb|AAN68077.1|AE016439_12 threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|313499446|gb|ADR60812.1| ThrS [Pseudomonas putida BIRD-1]
          Length = 640

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M   +  + +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFTTSSES-RDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +  K          L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEDQVKKEAADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+T                P E   +   I 
Sbjct: 407 YKDFGFSDIAMKLSTRPAKRVGSEELWDRAETALADALNESGLEWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++   + G   ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLIEHYAG---VFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + + +   +   S  
Sbjct: 613 ADLGSMPVAQFVELLTQAVSRR 634


>gi|303229391|ref|ZP_07316181.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515927|gb|EFL57879.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 636

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 156/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   +I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLF--VIKEEGPGFPFFLPKGMALRNELENFWREVHHDFE 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YDEIRTPIILNKHLWETSGHWDHYRENMYTTI-IDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++ L  R EL     G+ R R F   DA+ F L PE  +    K+   + RI
Sbjct: 350 RDLPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFML-PEQMQSELMKVIELFDRI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + GLK   +   + P            A         +K       P +         
Sbjct: 409 YSQFGLKY-HVELSTKPDNAMGDDAIWEAATEALRNAIEAKGIDYVINPGDGA------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I           +  + G
Sbjct: 461 ----------FYGPKLDYHIEDSLG----------RTWQCGTI-QLDMNLPERFNVEYIG 499

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   M      G+M     ++   + G    W   +AP ++ ++ I    +   +
Sbjct: 500 EDGQKHRTIMIHRACFGSMERFIGILTEHYAGAFPTW---MAPVQVKVLPI---SEKHVE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++      V  DD  E+IG +   A +   P  ++VG K + D+ V ++    
Sbjct: 554 YANQLAKQMRHDYVRVEVDDRNEKIGYKIRQAQMEKVPYMLVVGDKEMEDNSVNVRKHGG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  +E  N         
Sbjct: 614 DELGTVPFDEFFNSIKIEIKER 635


>gi|15895629|ref|NP_348978.1| threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|22654130|sp|Q97GK4|SYT_CLOAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15025373|gb|AAK80318.1|AE007736_8 Threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325509777|gb|ADZ21413.1| threonyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 637

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 157/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ +L+E   RD      +L L T  +H+   G   + P G    + +    RE  ++ G
Sbjct: 231 YINMLEEAKKRDHRKIGKELDLFT--MHEEGPGFPFFHPKGMVLKNLLLNYWREVHDKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + +  LW +SG +D Y + M      ++      P +      +++ +I SY
Sbjct: 289 YDEISTPIILNEALWHQSGHWDHYKENMY-FTKIDEADYAIKPMNCPGSILVYKDNIHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +I L  R E      G+MR R F   DA+ F +T E        +       
Sbjct: 348 RELPIKLAEIGLVHRHEKSGALHGLMRVRCFNQDDAHIF-MTKEQITEEILGVIKLIDSF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E    A  G      + +        +   +   I 
Sbjct: 407 YKVFGFEYY-VELSTRPEDSMGSDEDWEAATNGLINALNAANLEYIVNEGDGAFYGPKID 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 466 F---------------------------HLKDCIGRTWQCGTI-QLDFQMPERFDINYIG 497

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H   M      G++     ++   + G    W   +AP ++ ++NI        +
Sbjct: 498 ADGEKHRPVMVHRVVFGSIERFIGILIEHYAGAFPTW---LAPVQVKVMNIT---DSQVE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  +L + G  V  D   E+IG +   A L   P  +++G K + +  + ++ R  
Sbjct: 552 YVDAISEKLKEAGIRVEKDVRNEKIGYKIREAQLKKVPYMIVIGDKEIKEGIISVRSRKE 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M++E+ I   +      
Sbjct: 612 GDLGSMNIEDFIFRINAEVKEK 633


>gi|327481051|gb|AEA84361.1| threonyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 640

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G     N+   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HTQEEAPGMVFWHPAGWTLYQNLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG + +Y + M   +  N +     P +      IF   +KSY
Sbjct: 289 YQEVRTPQVVDRILWEKSGHWSNYAENMFTTSSEN-RDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  K          L++
Sbjct: 348 RDLPLRMAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A++   +            P E   +   I 
Sbjct: 407 YADFGFSDIAMKLSTRPAKRVGSDELWDRAESALAEALNESGLAWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYVA 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G    W   +AP +  ++NI         
Sbjct: 499 EDNSRQRPVMLHRAILGSFERFIGMLIEHYAGAFPAW---LAPTQAVIMNITDK---QAA 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAIEVEKTLVQSGFRAKCDLRNEKIGFKIREHTLLKTPYLLVIGDREVETRSVAVRSREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M LE+     +   S  
Sbjct: 613 VDMGSMPLEQFAQLLAQAVSRR 634


>gi|251792477|ref|YP_003007203.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247533870|gb|ACS97116.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 643

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +  +  
Sbjct: 232 YLQRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +YG  M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I ++  + P     + +    A+ G                 E   +   I 
Sbjct: 408 YSTFGFTNIFVKLSTRPEKRIGADDMWDCAEEGLANALKHNGLEYEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G I      ++LP  ++A++
Sbjct: 468 FAL---------------------------RDCLDREWQCGTI---QLDFALPGRLNASY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G++     +I   + G    W   +AP +  ++NI       
Sbjct: 498 VAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +  +LS  G  V  D   E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 552 SEYVQDVAKKLSDAGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIETGKVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                   ++EE ++    +  N 
Sbjct: 612 KGQDLGTFTVEEFLDVLKKQVRNR 635


>gi|71066652|ref|YP_265379.1| threonyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|123775558|sp|Q4FPW3|SYT_PSYA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71039637|gb|AAZ19945.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychrobacter
           arcticus 273-4]
          Length = 644

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L    +   +AE   H+ + +      + + + G+  W   G      +   +R+ Q   
Sbjct: 228 LKTYIQRIEEAEKRDHRKIGKALNLFHMQEQAPGMVFWHANGWTIYQVLEQYMRKVQQDN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW  SG + +Y   M   +    +     P +      +F   +KS
Sbjct: 288 GYEEIKTPQIVDRSLWERSGHWGNYATNMFTTSSEK-RDYAVKPMNCPCHVQVFNQGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F   DA+ F  T    +          L 
Sbjct: 347 YRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTQSQIQQEVADFIKLTLA 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G  +I M+  + P     S E    A+        +       +P E   +   I
Sbjct: 406 VYEDFGFNNIIMKLSTRPEKRVGSDESWDFAEKALADALDNSGLDWAYLPGEGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
             +                            K    R  + G I          + A F 
Sbjct: 466 EFSL---------------------------KDSLGRVWQCGTI-QVDPNMPERLDAEFV 497

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                ++  + +    +G+      ++  ++ G   +W   +AP ++ ++NI        
Sbjct: 498 NEQNEREVPIMLHRAILGSFERFIGILIENYAGWMPVW---LAPQQVVVMNITDK---QA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +ACE +   L K G     D   E+IG +     L   P  +++G K V    V ++ R 
Sbjct: 552 EACENVVNELKKSGLRAISDLRNEKIGFKIREKTLERIPYMLVLGDKEVESGSVNVRTRE 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS+ E I       +  
Sbjct: 612 GENLGVMSVAEFIILVETAVAEK 634


>gi|134299469|ref|YP_001112965.1| threonyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|189083605|sp|A4J4Y7|SYT_DESRM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134052169|gb|ABO50140.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Desulfotomaculum reducens MI-1]
          Length = 635

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 151/445 (33%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   I +   RD      +L L +  I +   G   + P G    + +    R+E  
Sbjct: 228 LDEHLFRIEEAKRRDHRKLGQELDLFS--IQEEGPGFPFFHPKGMVLRNELENFWRQEHK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  +W +SG +  Y   M      ++      P +      ++++ +
Sbjct: 286 KRGYQEIRTPIILNRSMWEQSGHWAHYKDNMY-FTKIDEADYAVKPMNCPGSILVYKTRM 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + ++ L  R EL     G+MR R F   DA+ F L P   K     +   +
Sbjct: 345 HSYRDLPLRWGELGLVHRHELSGALHGLMRVRCFTQDDAHIFML-PSQIKDEIIGVIDLF 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              ++  GL    +   + P     S E   +A         +K         +   +  
Sbjct: 404 DYFYNTFGLNY-HVELSTRPEKSMGSDEMWEVATNSLRDALEAKKMDYKVNEGDGAFYGP 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I  +                                 R  + G I     +     +  
Sbjct: 463 KIDFHLTDS---------------------------LGRTWQCGTI-QLDFQMPERFNLN 494

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +     G++     ++     G   +W   +AP ++ ++ I      
Sbjct: 495 YVGEDGQKHRPVMIHRVVFGSIERFIGILTEHFAGAFPVW---LAPVQVKVLPIT---DR 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   ++  RL  +   V  D   E+I  +   A     P  +++G + +    V ++ 
Sbjct: 549 HHEYARELVKRLQGLDIRVELDARNEKINYKIREAQTQKIPYMLVIGDREMEQGAVAVRE 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    +S+ + I        N 
Sbjct: 609 RGKGDVGAISVGDFIKKIEDDIQNK 633


>gi|163752580|ref|ZP_02159762.1| threonyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161327534|gb|EDP98738.1| threonyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 642

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 156/447 (34%), Gaps = 45/447 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IRE+
Sbjct: 227 KALKIHLNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTLFLELEKFIREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y + M      N +  +  P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTKSEN-REYVIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVQQEVSACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P       E    A+    Q   + D     +P E   +
Sbjct: 403 MVYDTYATFGFNNIVIKLSTRPEQRIGDDEMWDRAEEALKQALIANDIEFEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   +AP ++ ++NI  
Sbjct: 493 LGATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTW---LAPMQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L + G     D   E+IG +     L   P  ++VG + + + +V
Sbjct: 550 KQS---DYAHEVVNLLKENGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       M +EE     + + S
Sbjct: 607 AVRTRDGVDLGKMRIEEFAAKVNKQIS 633


>gi|293610405|ref|ZP_06692706.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|292827637|gb|EFF86001.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|325124561|gb|ADY84084.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 640

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 153/441 (34%), Gaps = 44/441 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       L L    + + + G+  W P G      +   +R+ Q   G +E
Sbjct: 234 RIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYLE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG   +Y   M      N +     P +      +F   +KSYR+L
Sbjct: 292 IKTPQIVDFTLWEKSGHAANYADNMFTTHSEN-RNYAVKPMNCPCHVQVFNQGLKSYRDL 350

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G+MR R F   DA+ F  T E             L ++  
Sbjct: 351 PIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLEVYKD 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + + M+  + P           +A+        +        P E   +   I  + 
Sbjct: 410 FGFEEVQMKLSTRPEKRVGDDALWDMAEKSLADALDAAGLEWELQPGEGAFYGPKIEFSL 469

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                                      K    R  + G I      ++LP  + A++   
Sbjct: 470 ---------------------------KDCLGRVWQCGTI---QCDFNLPERLDASYVTE 499

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D  +D  V +    +G+      ++   + G     P  ++P +  ++NI        +A
Sbjct: 500 DNDRDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPLQACVMNIT---DSQAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           CEK+ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 CEKVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|226941673|ref|YP_002796747.1| threonyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|254783525|sp|C1DDA6|SYT_LARHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226716600|gb|ACO75738.1| Syt [Laribacter hongkongensis HLHK9]
          Length = 633

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 152/445 (34%), Gaps = 49/445 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I   + G+  W P G      V   +R   
Sbjct: 229 EAYLHMLEE----AEKRDHRKLGRQLDLFHIQDEAPGMVFWHPKGWTLWQQVEQYMRRVL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW +SG +  Y   M        +     P +      IF   
Sbjct: 285 IANDYQEVRTPQIVDRSLWEKSGHWAMYQDLMFTTESEK-RDYAVKPMNCPCHIQIFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T    +         
Sbjct: 344 LKSYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRNFVQDDAHIF-CTEAQMQPETAAFIDL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G  +I ++  + P     + E    A+        +K       P E   + 
Sbjct: 403 LQAVYQDFGFDNILIKLSTRPEKRVGADELWDQAEAALAAALAAKGLAYELQPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I  +                            K    R  + G        ++LP  +
Sbjct: 463 PKIEFSL---------------------------KDCLGRVWQCGT---LQLDFNLPVRL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D  K H V +    +G++     ++   H G   +W   +AP +++++NI   
Sbjct: 493 GAEYVSEDNAKKHPVMLHRAILGSLERFIGILIEHHAGAMPLW---LAPVQMAVLNIT-- 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   ++   L K G  V  D   E+I  +     L   P Q+IVG K  + + V 
Sbjct: 548 -EAQAEYATEVAETLKKQGFRVDLDLRNEKISYKIREHSLQKLPYQIIVGDKEKAGALVA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           ++ R       + L + I       
Sbjct: 607 VRARTGEDLGQIPLSQFIERLKSEL 631


>gi|126174365|ref|YP_001050514.1| threonyl-tRNA synthetase [Shewanella baltica OS155]
 gi|153000743|ref|YP_001366424.1| threonyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217973356|ref|YP_002358107.1| threonyl-tRNA synthetase [Shewanella baltica OS223]
 gi|166225497|sp|A3D4I2|SYT_SHEB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225498|sp|A6WNH2|SYT_SHEB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783536|sp|B8EES6|SYT_SHEB2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125997570|gb|ABN61645.1| threonyl-tRNA synthetase [Shewanella baltica OS155]
 gi|151365361|gb|ABS08361.1| threonyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217498491|gb|ACK46684.1| threonyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 642

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTDSQVQEEVSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q     +     +P E   +  
Sbjct: 405 YDTYATFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRDNNIEFTILPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPSRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M LE+       + S
Sbjct: 609 RTRDGIDLGKMRLEDFATKIHQQIS 633


>gi|146293114|ref|YP_001183538.1| threonyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166225500|sp|A4Y706|SYT_SHEPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145564804|gb|ABP75739.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella
           putrefaciens CN-32]
          Length = 642

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTDDQVQEEVSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q   + +     +P E   +  
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRANNIEFTLLPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPSRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  ++I     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVQEIVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M LE+       + S
Sbjct: 609 RTRDGIDLGKMRLEDFATKIHQQIS 633


>gi|226324523|ref|ZP_03800041.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
 gi|225206971|gb|EEG89325.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
          Length = 643

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 162/448 (36%), Gaps = 47/448 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L   M+ +   G   +LP G +  + +    RE   
Sbjct: 227 LEEYLHMMEEAKKRDHRKLGKELGLF--MMREEGPGFPFFLPKGMELKNQLLDYWREIHK 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+S P + S  LW  SG +D Y   M      +D+     P +      ++ S  
Sbjct: 285 KAGYVEISTPIMLSRHLWETSGHWDHYKDNMYT-TVIDDEDFAIKPMNCPGGILVYESEP 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  +     +    
Sbjct: 344 RSYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQVRDEIKGVVKLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P     S E   +A                         DD
Sbjct: 403 NEVYSLFGFKY-HVELSTRPEDSMGSDEDWDMATEALR-----------------GALDD 444

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
           +     + E   A Y    D H E              R  + G I   F    +++L  
Sbjct: 445 LGLPYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRFNL-- 492

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I   
Sbjct: 493 --EYTGADGEKHRPIMIHRVIFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI--- 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   L+  G     D   E+IG +   A +   P  ++VG+K   D  V 
Sbjct: 545 SDKYMDYAQKVLDELNNSGVRAEIDTRAEKIGYKIREAQMKKIPYMLVVGAKEEEDGLVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R  G     SL + +          
Sbjct: 605 IRSRFEGDEGQKSLTDFLAAIKMEIQAK 632


>gi|120598808|ref|YP_963382.1| threonyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|166225502|sp|A1RJI3|SYT_SHESW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120558901|gb|ABM24828.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella sp.
           W3-18-1]
          Length = 642

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTDDQVQEEVSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q   + +     +P E   +  
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRANNIEFTLLPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPNRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  ++I     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVQEIVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M LE+       + S
Sbjct: 609 RTRDGIDLGKMRLEDFATKIHQQIS 633


>gi|167034477|ref|YP_001669708.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083619|sp|B0KKR8|SYT_PSEPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166860965|gb|ABY99372.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 640

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M   +  + +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFTTSSES-RDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T E  K          L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEEQVKKEAADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+T                P E   +   I 
Sbjct: 407 YKDFGFSDIAMKLSTRPAKRVGSEELWDRAETALADALNESGLEWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++   + G   ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLIEHYAG---VFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 613 ADLGSMPVAQFAELLTQAVSRR 634


>gi|290475547|ref|YP_003468435.1| threonine tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289174868|emb|CBJ81669.1| threonine tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 642

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 153/449 (34%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   +L  L+E   RD      +L L    + + + G+  W   G      +    R +
Sbjct: 227 KQLNAYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFARVK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G +++Y + M   +  N +     P +      IF  
Sbjct: 285 LKEYHYQEVKGPFMMDRILWEKTGHWENYKEHMFTTSSEN-REYCVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +      +    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQIHQEVSNCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G + + ++  + P     + +    A+    +            P E   +
Sbjct: 403 MIYDVYNTFGFEKVVVKLSTRPEKRIGTEKQWDEAEADLAEALKQSGIEFEYQPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      +SLP  
Sbjct: 463 GPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFSLPAR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           ++A++ G + +    V +    +G++     ++   + G    W   +AP ++ ++NI  
Sbjct: 493 LNASYVGENNERKVPVMIHRAVLGSLERFIGILTEEYAGFFPTW---LAPQQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    +++  +L   G     D   E+IG +     L   P  ++ G K V   K 
Sbjct: 550 GQAG---YVQELVKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKT 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       +++ E I        + 
Sbjct: 607 SVRTRRGKDLGSINVSEFIEKLLTEIRSR 635


>gi|254468875|ref|ZP_05082281.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087685|gb|EDZ64968.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 652

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 154/448 (34%), Gaps = 49/448 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + +      I  ++ G+  W   G      +   +R++ 
Sbjct: 246 KDYLHRLEE----AEKRDHRKLGKHLDLFHIQDNAPGMVFWHAKGWSLWQEIENYMRKKF 301

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  PT+    LW +SG +++Y + M      + +     P +      IF   
Sbjct: 302 VDYGYQEIKTPTVLDKTLWEKSGHWENYHENMFITHSEH-RDYAVKPMNCPGHVQIFNHS 360

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R+E      G+MR R F   DA+ F  T +            
Sbjct: 361 LHSYRELPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILDEVINFNKM 419

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +  +   G   I ++  + P     S E    ++    +   +        P E   + 
Sbjct: 420 LMETYKDFGFNDIEVKLSTRPEKRVGSDEVWDQSEKALEEALKATGLDYEIQPGEGAFYG 479

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 480 PKIEY---------------------------VLRDSLNRLWQCGTI---QLDFNLPVRL 509

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A +   +  K H V +    +G+M     ++   + GK   W   +AP +  ++NI   
Sbjct: 510 NAEYVDENSNKKHPVMLHRAIVGSMERFIGILIEHYAGKFPTW---LAPVQAVVMNI--- 563

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                     +   L K       D   E+I  +     +   P  +++G + + + +V 
Sbjct: 564 SDSQAKYVGDVVDFLKKNDIRCESDLRNEKITYKIREHSISRIPFMLVIGDREMQNKQVA 623

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ +       M+LEE +   + + +  
Sbjct: 624 VRTQQGEDLGVMTLEEFVETMNTQITAK 651


>gi|160875442|ref|YP_001554758.1| threonyl-tRNA synthetase [Shewanella baltica OS195]
 gi|189083621|sp|A9L2Q9|SYT_SHEB9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160860964|gb|ABX49498.1| threonyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315267632|gb|ADT94485.1| threonyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 642

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTDSQVQEEVSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q     +     +P E   +  
Sbjct: 405 YDTYATFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRDNNIEFTILPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPSRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M LE+       + S
Sbjct: 609 RTRDGIDLGKMRLEDFATKIHQQIS 633


>gi|319426373|gb|ADV54447.1| threonyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 642

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVQEEVSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q   + +     +P E   +  
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRANNIEFTLLPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPNRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  ++I     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVQEIVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M LE+       + S
Sbjct: 609 RTRDGIDLGKMRLEDFATKIHQQIS 633


>gi|304408774|ref|ZP_07390395.1| threonyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302777|ref|ZP_07582532.1| threonyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304352595|gb|EFM16992.1| threonyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306913137|gb|EFN43559.1| threonyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 642

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTDSQVQEEVSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q     +     +P E   +  
Sbjct: 405 YDTYATFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRDNNIEFTILPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPSRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M LE+       + S
Sbjct: 609 RTRDGIDLGKMRLEDFATKIHQQIS 633


>gi|239814876|ref|YP_002943786.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|259516786|sp|C5CUU2|SYT_VARPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239801453|gb|ACS18520.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 635

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 148/446 (33%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   I +   RD      +L L    I + + G+  W P G      V   +R   
Sbjct: 227 QLDQYIQRIEEAEKRDHRKLGKELDLF--HIDEVAPGVVFWHPKGWALWQAVEQYMRGIY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
             TG  E+  P +    LW ++G + +Y   M        +     P +      IF+S 
Sbjct: 285 RDTGYWEVKGPQILDKSLWEKTGHWQNYRDNMFTTESEK-REYALKPMNCPGHVLIFKSD 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP  + +     R+E      G+MR R F   D + F  T +            
Sbjct: 344 LRSYRDLPLRYGEFGQCHRNEPSGALHGIMRVRGFTQDDGHIF-CTEDQILEECVAYTAQ 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     S E    A+    +            P +   + 
Sbjct: 403 LQKVYADFGFTEILYKVATRPDNRVGSDELWDKAEHAVMEALRRSGVDFIISPGDGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I                       L D+L    +     ++       G +Y      
Sbjct: 463 PKIEY--------------------TLKDALGRQWQCGTMQVDFNTAERLGGEY------ 496

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G+ H V +    +G++     ++   H G    W   +AP +++++NI    + 
Sbjct: 497 -VTETSGRAHPVMLHRAIVGSLERFIGMLIEHHAGALPAW---LAPVQVAVLNI---SEG 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L   G  V  D   E+I  +     L   P  ++VG K      V ++ 
Sbjct: 550 QADYAASVAKTLQNQGLRVQLDLHNEKITYKIRKHSLQKLPYILVVGDKEREAGAVAVRA 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       MSLE  +       ++ R
Sbjct: 610 RGNQDLGAMSLESFVQRLVQDVADKR 635


>gi|77360339|ref|YP_339914.1| threonyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875250|emb|CAI86471.1| threonyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 636

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 157/452 (34%), Gaps = 49/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   +    + + G+  W   G      +   +R
Sbjct: 227 KQLKAYLKRLEE----AEKRDHRRIGKALDLWHWQEEAPGMVFWHNDGWSIYRELEDFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+       E+  P +    LW +SG ++ Y   M        +     P +      IF
Sbjct: 283 EKLREYDYEEVKGPMMMDRSLWEKSGHWEKYADAMFTTVSEK-REYAIKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIMDEVSAC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G + I ++  + P            A+    +     +     +P E  
Sbjct: 401 IKMVYDTYETFGFEKIVVKLSTRPEQRIGEDHMWDKAELALAEALKLNEIEFDYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      ++LP
Sbjct: 461 FYGPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFALP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   + +    V +    +G++     ++   + G    W   +AP ++ ++NI
Sbjct: 491 GRLGATYVAENNERRTPVMIHRAILGSIERFIGILTEEYAGLFPTW---LAPKQVVIMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  +++  +L+K+G     D   E+IG +     L   P  ++VG K V   
Sbjct: 548 TDK---QADYVKEVVQKLNKLGIRATADLRNEKIGFKIREHTLKRIPYLLVVGDKEVEQQ 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +V ++ R        ++++ +   S    + +
Sbjct: 605 EVAVRTRTGEDLGKFNVDDFVAKISEEIKSRQ 636


>gi|169334538|ref|ZP_02861731.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259255|gb|EDS73221.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
          Length = 637

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 99/451 (21%), Positives = 166/451 (36%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +L +L+E   RD       + L   MI +   G   +LP G    + +    REE
Sbjct: 227 KLLEEYLAMLEEAKKRDHRKIGKDMDLF--MICEEGPGFPFFLPKGMVIRNELENFWREE 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +  LW  SG +D Y   M      +D      P +      +++ 
Sbjct: 285 HRKRGYQEIKTPLILNEQLWHTSGHWDHYKDNMY-FTRIDDNDYAIKPMNCPGSMLVYKR 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP    ++    R EL     G+MR R F   DA+ F L PE  K     +  
Sbjct: 344 KMWSYRDLPLRIGEMGQVHRHELSGALHGLMRVRTFTQDDAHIFML-PEQIKEEVIGVID 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G K   +   + P     S E   +A     +    K  MD+ +   +  F
Sbjct: 403 FIDYVYNMFGFKY-HVELSTRPDDSMGSDEDWNMATEALREAMEEK-GMDYVVNEGDGAF 460

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSL 296
                           Y    D H E              R  + G I   F    ++  
Sbjct: 461 ----------------YGPKLDFHLEDCLG----------RTWQCGTIQLDFQMPQRF-- 492

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG+ H  V +     G++     ++     G   +W   +AP +  LI I 
Sbjct: 493 --DLTYIGHDGEKHRPVMIHRVIFGSIERFIGILTEHFAGAFPLW---LAPVQAKLIPIT 547

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +  + I  +L + G     DD  E++G +   A L   P  +I G + + +  
Sbjct: 548 DRN---LEYVKGIKDKLEQKGIRCEIDDRSEKMGYKIREAQLEKVPYMIIAGDRDMENGV 604

Query: 416 VEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
           + ++ R  G     MS++E IN A       
Sbjct: 605 ISVRARKDGEDLGAMSVDEFINKAVKEIEEK 635


>gi|330503839|ref|YP_004380708.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328918125|gb|AEB58956.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 640

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWTVYQVLEQYMRQVQREHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M   A  N +     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFTTASEN-RDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +  K          L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEDQVKKEAADFIRLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+    +            P E   +   I 
Sbjct: 407 YSDFGFTDIAMKLSTRPAKRVGSDELWDRAEGALAEALNESGLAWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G    W   +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLIEHYAGSFPAW---LAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +    L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAREAEKTLNQSGFRAKVDLRNEKIGFKIREHTLLKVPYLLVIGDREVETRSVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M +E+         S  
Sbjct: 613 VDLGSMPIEQFAAQLQQAVSRR 634


>gi|33152811|ref|NP_874164.1| threonyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|71153574|sp|Q7VKR9|SYT_HAEDU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33149036|gb|AAP96553.1| threonyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 643

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 154/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLTEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW  +G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIESEVTACIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     + +    A+ G +    +                
Sbjct: 404 VYDIYSTFGFTNIFVKLSTRPDNRIGADDMWDRAEAGLSAALSA---------------- 447

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                N +  Q      A      E         +    R  + G +      ++LP  +
Sbjct: 448 -----NGLEYQIQHGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPSRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D   H  V +    +G++     +I   + G   +W   +AP +  ++NI   
Sbjct: 494 DASYVTEDNSRHTPVMIHRAILGSIERFIGIITEEYAGFFPVW---LAPIQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQQVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEITEGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++E  +     +    
Sbjct: 608 VRTRKGEDLGTFNIEAFVEMLKAQVKTR 635


>gi|163857146|ref|YP_001631444.1| threonyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|229557977|sp|A9IRH6|SYT_BORPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|163260874|emb|CAP43176.1| thrS [Bordetella petrii]
          Length = 650

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 152/447 (34%), Gaps = 43/447 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R          + G+  W P G      V   +R   N 
Sbjct: 236 YLHMLEE----AERRDHRKIGRDLDLFHFQDEAPGLIFWHPKGWALWQQVEQYMRAVYND 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D+Y + M      N +     P +      IF + + 
Sbjct: 292 NGYQEVKAPQILDLSLWKKTGHWDNYRENMFTTESEN-RVYGLKPMNCPGHVQIFNAGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F  T +  +           
Sbjct: 351 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEDQLQDECADFTALLQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   +  +  + P     S +    A+T   +            P E   +   
Sbjct: 410 KVYRDFGFHEVLYKVATRPEKRIGSDDIWDKAETALMESLRRTGCEFEISPGEGAFYGPK 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                       L D++  + +     ++       G +Y        
Sbjct: 470 IEY--------------------TLKDAIGRHWQCGTVQVDFSMPVRLGAEYVDA----- 504

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D +   V +    +G++     ++  +H G     P  +AP +  +  I    +   
Sbjct: 505 --QDQRRAPVMLHRAILGSLERFIGMLIENHAGAM---PPWLAPVQAVVCCI---SEPSA 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++   
Sbjct: 557 DYAAQITQTLKKQGFRVQSDLRGEKITRKIREHSLQKVPYILVVGDKEKQNGTVAVRGLG 616

Query: 423 TGIREDMSLEEVINYASHRFSNNRPVL 449
                 ++LE+     +   +  R V+
Sbjct: 617 GLDLGVIALEDFAARLAEDVAARRDVV 643


>gi|320529200|ref|ZP_08030292.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138830|gb|EFW30720.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 639

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 159/444 (35%), Gaps = 42/444 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAEKRDHRKLGRELDLFS--LHEEGPGFPFFHPNGMILRNELLNYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M      +++     P +      ++RS + SY
Sbjct: 291 YSEISTPVILSRKLWETSGHWFHYRENMYTTQ-IDEEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+ F +TPE  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAHLF-VTPEQIEGEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E   LA +G  +   ++         +   +   I 
Sbjct: 409 YRTFGLSY-KAELSTRPDDSMGSDEMWELATSGLQKALENRGLDYIVNEGDGAFYGPKID 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G I             T+ G
Sbjct: 468 F---------------------------HLRDSIGRTWQCGTI-QLDMSLPEKFDLTYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++  +  G   +W   + P ++ ++ I    +   +
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILIENFAGAFPVW---MTPVQVRILPIT---ERHAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  R+   G  V  D+  E+ G +   + +   P  ++VG +      V ++    
Sbjct: 554 YAEELRKRMFDRGIRVEVDNRNEKTGYKIRESQVKKTPYTLVVGDQEQESGTVALRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNNRP 447
                MS ++ I +   + +   P
Sbjct: 614 KDSTVMSADDFIAFVEKKIAERSP 637


>gi|221134666|ref|ZP_03560969.1| threonyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 637

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 155/451 (34%), Gaps = 50/451 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +T  + H    + G+  W   G      + + IR
Sbjct: 227 KQLKAYLNRLEE----AEKRDHRKIGKTLDLFHWQEEAPGMVFWHNDGWSIYTELESFIR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++  +    E+  P +    LW +SG +  Y   M        +     P +      IF
Sbjct: 283 KKLTQYDYQEVKGPLMMDRSLWEKSGHWGKYSSNMFTTESEK-REYAIKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQILDEVSGC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G + I ++  + P     S +     ++       + D      P E  
Sbjct: 401 IKMVYDTYETFGFEKIVVKLSTRPEERVGSDDIWDKTESALADALKANDIEFDYQPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      +S+P
Sbjct: 461 FYGPKIEFTL---------------------------HDCLDRAWQCGTV---QLDFSMP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + +T+   DG+    V +    +G++     ++   + G    W   +AP +  ++NI
Sbjct: 491 GRLGSTYVAEDGERKVPVMIHRAILGSLERFIGILTEEYAGHFPTW---LAPTQAVILNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   + C K+          V  D   E+IG +     L   P  ++VG K +   
Sbjct: 548 TDKQS---EYCTKLQKTARNA-IRVKPDLRNEKIGFKIREHTLKRVPYMLVVGDKEMEAG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +V ++ R       MS+E+ +       ++ 
Sbjct: 604 EVAVRTRKGDDLGKMSIEDFLIKVRTDIADK 634


>gi|296388793|ref|ZP_06878268.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 640

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M   +  + +     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFTTSSES-RDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  K          L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+                 P E   +   I 
Sbjct: 407 YRDFGFTDIAMKLSTRPAKRVGSDELWDRAEGALADALNESGLAWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------KDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G    W   +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLIEHYAGAFPAW---LAPTQAVVMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVVRMLGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 613 EDLGSMPVTQFAELLAQAVSRR 634


>gi|313892956|ref|ZP_07826533.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442309|gb|EFR60724.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 636

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 155/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   +I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHLLEEAAKRDHRKLGKELGLF--VIKEEGPGFPFFLPKGMALRNELENFWREVHHEFD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +  Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILNKQLWETSGHWFHYRENMYTTI-IDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L P+  +    K+   + RI
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFML-PDQMQSELMKVIELFDRI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + GLK   +   + P            A         +K       P +         
Sbjct: 409 YSQFGLKY-HVELSTKPDNAMGDDAIWEAATEALRNAIEAKGIPYVINPGDGA------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I              + G
Sbjct: 461 ----------FYGPKLDYHIEDSLG----------RTWQCGTI-QLDMNLPERFQIDYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G+M     ++   + G    W   +AP ++ ++ I    +   +
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGILTEHYAGAFPTW---MAPVQVKILPI---SEKHVE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++    
Sbjct: 554 YAKELAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  EE  N         
Sbjct: 614 DELGSVPFEEFFNSIKIEIKER 635


>gi|257092825|ref|YP_003166466.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045349|gb|ACV34537.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 638

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 159/446 (35%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R      +   + G+  W   G      V   +R     
Sbjct: 231 YLHLLEE----AEKRDHRKLGRQLDLFHLQDEAPGMVFWHAKGWTIWQEVEQYMRRLLGE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M   A  N +     P +      IF   ++
Sbjct: 287 NGYCEVKTPMIMDRTLWERSGHWQNYAEHMFTTASEN-RDYAIKPMNCPGHIQIFNQGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +    +         
Sbjct: 346 SYRDLPLRLAEFGSCHRNEPSGALHGIMRVRAFVQDDAHIFCTEAQVLPET-AAFIDLLE 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +I+   G   I ++  + P     S      A+    +   +K       P E   +   
Sbjct: 405 KIYADFGFTDILVKLSTRPDKRIGSDAVWDRAEAALAEALAAKGLAYDLQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G        ++LP  + A
Sbjct: 465 IEFSL---------------------------KDCLGRVWQCGT---LQLDFALPERLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D   H  V +    +G++     ++   + G   +W   ++P ++ ++NI    +
Sbjct: 495 HYVGEDNDRHVPVMLHRAILGSLERFIGILIEHYAGAMPLW---LSPMQVVVLNI---SE 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  E++ A L + G     D   E+I  +     L   P QV+VG K V+ + V ++
Sbjct: 549 KQGDYAEQVAATLRRAGLRAEADLRNEKITRKIREHSLNKLPYQVVVGDKEVAANLVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       MSLE +I       ++ 
Sbjct: 609 TRGGQDLGQMSLESLIRQLLEEVASR 634


>gi|158321007|ref|YP_001513514.1| threonyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141206|gb|ABW19518.1| threonyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 636

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 160/449 (35%), Gaps = 47/449 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L +  + +   G   + P G    + +    REE  
Sbjct: 230 LEEHLNRLEEAKKRDHRKLGKELDLFS--LQEEGPGFPFFHPRGMVLRNALENFWREEHV 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  LW +SG +D Y + M      +D      P +      ++    
Sbjct: 288 KRGYDEIKTPIILNEKLWRQSGHWDHYQENMY-FTKIDDGDYAIKPMNCPGSILMYNRKK 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++ +  R EL     G+MR R F   DA+ F L PE  K     +    
Sbjct: 347 HSYRDFPIRMGELGIVHRHELSGALHGLMRVRNFTQDDAHLFVL-PEQIKEEIIGIIDFV 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G K   +   + P     + E   LA                 I S     D+
Sbjct: 406 DYVYNIFGFKY-HIELSTRPENSMGTDEEWELA-----------------IGSLKGALDE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
                 I E   A Y    D H E              R  + G I   F    ++    
Sbjct: 448 KELSYKINEGDGAFYGPKIDFHLED----------CIGRTWQCGTIQLDFQMPQRF---- 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + GADG++H  + +     G++    A++   + GK   W   +AP ++ ++ I   
Sbjct: 494 DMNYVGADGENHRPIMLHRVIFGSVERFIAILIEHYAGKFPAW---LAPIQVQILPIADK 550

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +   K+   +   G  V  D   E+IG +   A L   P  +++G K +   +V 
Sbjct: 551 ---HHEYAIKLEREMKARGIRVEVDSRNEKIGYKIREAQLSKVPYMLVIGDKEMEAGEVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R  G    + +E  I          +
Sbjct: 608 VRSRDRGEVGAVKVESFIEDLVQEIKEKK 636


>gi|294792093|ref|ZP_06757241.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457323|gb|EFG25685.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 641

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 156/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   +I +   G   +LP G    + +    RE  +   
Sbjct: 238 YLHLLEEAAKRDHRKLGKELGLF--VIKEEGPGFPFFLPKGMALRNELENFWREVHHDFD 295

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S  LW  SG +D Y + M      +D+     P +      ++++ + SY
Sbjct: 296 YEEIRTPIILSKHLWETSGHWDHYRENMYTTI-IDDEEYAIKPMNCPGGILVYQNEMHSY 354

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L P+  +    K+   + RI
Sbjct: 355 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFML-PDQMQTELMKVIELFDRI 413

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + GLK   +   + P            A         +K       P +         
Sbjct: 414 YSQFGLKY-HVELSTKPDNAMGDDAIWEAATEALRNAIEAKGIPYVINPGDGA------- 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I              + G
Sbjct: 466 ----------FYGPKLDYHIEDSLG----------RTWQCGTI-QLDMNLPERFQIEYIG 504

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G+M     ++   + G    W   +AP ++ ++ I    +   +
Sbjct: 505 EDGQKHRPIMIHRACFGSMERFIGILTEHYAGAFPTW---MAPVQVKILPI---SEKHVE 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++    
Sbjct: 559 YAKELAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGG 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  EE  N         
Sbjct: 619 DELGSVPFEEFFNSIKIEIKER 640


>gi|114047517|ref|YP_738067.1| threonyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123326545|sp|Q0HV45|SYT_SHESR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113888959|gb|ABI43010.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella sp.
           MR-7]
          Length = 642

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 155/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLARLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAVKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVQAEVSSCIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q   +K+     +P E   +  
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRAKNIEFTILPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPSRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M +E+       + S
Sbjct: 609 RTRDGVDLGKMRIEDFAAKIHQQIS 633


>gi|330720856|gb|EGG99050.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 639

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 154/443 (34%), Gaps = 45/443 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD    + KL L    + + + G+  W   G      V   +R+ 
Sbjct: 227 KQLKKYLNFLEEASKRDHRKLAKKLDLF--HLQEEAPGMVFWHAKGWSIYQTVEQYMRKV 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  G  E+  P L    LW  SG  D +G EM   +   +K     P +      +F  
Sbjct: 285 QHDNGYQEIKTPQLVDFSLWERSGHADKFGDEMFS-SHSENKDYAVKPMNCPCHVQVFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP    +     R+E      G+MR R F+  DA+ F       +        
Sbjct: 344 GLRSYRDLPLRLAEFGCCHRNEPSGTLQGLMRVRGFVQDDAHIFCA-ESQIQDEVASFID 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   + ++  + P     S E    A+        +K       P E   +
Sbjct: 403 LLYSVYQDFGFDDVLVKLSTRPEKRVGSDEVWDKAEEALQLALDNKGIAWELQPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I  +                            +    R  + G I      +S+P  
Sbjct: 463 GPKIEFSL---------------------------RDCLGRVWQCGTI---QVDFSMPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A +   DG     V +    +G+      ++     G    W   +AP + +++NI  
Sbjct: 493 LDAQYVAEDGSRQVPVMLHRAILGSFERFIGILIEHFAGAFPAW---LAPEQAAIVNIT- 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 + C  +   L   G  VF D   E+IG +     +   P  ++VG K +   ++
Sbjct: 549 --DSQAEYCRNVEKTLRNKGFRVFSDLRNEKIGFKIREHSIQKIPYVLVVGDKEMEAGQI 606

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++ +       MS+E      +
Sbjct: 607 AVRTQKGEDLGSMSIEAFCERLT 629


>gi|300722778|ref|YP_003712069.1| threonine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297629286|emb|CBJ89885.1| threonine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 642

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    +W ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRIMWEKTGHWENYKENMFTTSSEN-REYCVKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +      +        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEDQILQEVSSCIKMIYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + +    A+    +            P E   +   I 
Sbjct: 408 YGTFGFEKIVVKLSTRPEKRIGTEKQWDEAEADLAKALTQNSIEFEYQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPARLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G + +    V +    +G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VGENNERKVPVMIHRAVLGSLERFIGILTEEYAGFFPTW---LAPQQVVVMNITDGQS-- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +++  +L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R
Sbjct: 553 -NYVQELVKKLQDVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVSVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + + E          + 
Sbjct: 612 RGKDLGSIDVSEFTEKLLTEIRSR 635


>gi|167629857|ref|YP_001680356.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|167592597|gb|ABZ84345.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 641

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 155/440 (35%), Gaps = 41/440 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L T  I +   G   + P G    + +    REE  R G  E
Sbjct: 237 RIEEAKRRDHRRIGQELELYT--ILEEGPGFPFFFPKGMIIRNELENFWREEHARAGYRE 294

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +  LW  SG + +Y + M  +   +++     P +      +++  I SYR+L
Sbjct: 295 VRTPIILNRSLWERSGHWANYRENMY-VTQIDEEDYCVKPMNCPGGMLVYKQAIHSYRDL 353

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++ L  R E+     G+MR R F   DA+ F +TP   K     +     R++  
Sbjct: 354 PLRMGELGLVHRHEISGALHGLMRVRCFTQDDAHIF-MTPGQIKDEIIGVIELIDRMYKT 412

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G  +  +   + P     S E   LA     +   +K       P +   +   I    
Sbjct: 413 FGF-AYHVELSTKPEKAMGSDEIWELATNSLEEALKAKGMDYKINPGDGAFYGPKIDF-- 469

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                                      K    R  + G I     +       T+ G DG
Sbjct: 470 -------------------------HLKDCIGRTWQCGTI-QLDFQMPERFDLTYVGEDG 503

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++   + G    W   +AP +  ++ I        +   
Sbjct: 504 QKHRPVMIHRVVFGSIERFIGILTEHYAGAFPTW---LAPVQARVLPIT---DRHHEYAA 557

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + + L+K G  V  D   E+IG +     +   P  ++VG K   +  V ++ R  G +
Sbjct: 558 SVRSALAKQGVRVEVDGRNEKIGYKIREGQVQKIPYLLVVGDKEAENGAVAVRKRGEGDK 617

Query: 427 EDMSLEEVINYASHRFSNNR 446
             M+L+          +  R
Sbjct: 618 GAMALDAFAAMILEEIAQKR 637


>gi|114332291|ref|YP_748513.1| threonyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122313048|sp|Q0ADN4|SYT_NITEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114309305|gb|ABI60548.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Nitrosomonas
           eutropha C91]
          Length = 635

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 155/447 (34%), Gaps = 44/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           ++ Y   + +   RD      +L L    + + + G+  W P G      +   +R+   
Sbjct: 228 QNNYLRRLEEAEKRDHRKLGKQLDLF--HMQEEAPGMVYWHPKGWAIWQQIEQYMRQVLA 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+  P +    LW +SG ++++ + M  + +   +     P +      +F   +
Sbjct: 286 KNGYVEIRTPQVLDISLWEKSGHWENFRENMF-ITESESRHYAIKPMNCPGHVQVFNHGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R+E      G+MR R F   DA+ F  T +       K     
Sbjct: 345 RSYRDLPLRLAEFGSCHRNEASGALHGLMRVRSFTQDDAHIF-CTEDQVLEEVTKFIDLL 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++   G     ++  + P     + E    A+         K+      P E   +  
Sbjct: 404 NQVYIDFGFHENLIKLSTRPAQRVGTEEQWDRAEAALAAALNQKELNWELQPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                               K    R  + G        +S+P  + 
Sbjct: 464 KIEFTL---------------------------KDSLGRKWQCGT---LQLDFSMPARLG 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   D  K   V +    +G+M     ++   H G   +W   ++P ++ ++NI  + 
Sbjct: 494 AGYIAEDNTKKIPVMLHRAILGSMERFIGILIEHHAGALPVW---LSPDQVVVLNISRN- 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + I   L +    V  D   E+I  +     L   P  ++VG K V +  V +
Sbjct: 550 --QADYVQSITNELKQNDIRVSSDLRNEKISYKIREHSLQKVPYLIVVGDKEVENQTVTV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       MSLE  +       +  
Sbjct: 608 RGRSNHDHGAMSLEGFVTLIRKEMAER 634


>gi|220928797|ref|YP_002505706.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999125|gb|ACL75726.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 635

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 157/446 (35%), Gaps = 41/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   I +   RD      +L L    I     G   ++P G    + +    R E 
Sbjct: 227 QLDEYLFRIEEAKKRDHRKLGRELDLFD--ILDEGPGFPFFMPKGMVLRNLLEDYWRSEH 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + + +LW+ SG +D+Y   M  +A  +++     P +      +F+  
Sbjct: 285 KKAGYQEIKTPVILNKELWLRSGHWDNYKNNMYTVA-IDEQDCAIKPMNCPGGILVFKRK 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP    ++ L  R EL     G+MR R F   DA+ F +TPE        +   
Sbjct: 344 LHSYRDLPQRMGELGLVHRHELSGALHGLMRVRCFTQDDAHIF-MTPEQITDEVTGVINL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               +   G K   +   + P     S E   L+  G  +    K               
Sbjct: 403 IDDFYSVFGFKY-NVELSTRPEKSIGSDEMWELSTAGLKKALDEKGIK------------ 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +I +   A Y    D H E              R  + G I             
Sbjct: 450 -----YTINKGDGAFYGPKIDFHLEDSIG----------RTWQCGTI-QLDMNLPERFDL 493

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ G DG+ H   M      G++    A++     G    W   ++P ++ ++ +     
Sbjct: 494 SYIGPDGEKHRPVMVHRVVFGSIERFIAILTEHFAGAFPTW---LSPVQVKILPLVDK-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L      V  D   E+IG +   A +   P  +++G K +    V ++
Sbjct: 549 -HYDYAYEVKKLLEADDIRVEVDTRNEKIGYKIREAQMDKTPYMLVIGDKELEGRLVSVR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G    ++ E+     S+   N 
Sbjct: 608 SRKDGDLGTITPEQFAEKISNEIKNK 633


>gi|303230749|ref|ZP_07317496.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514509|gb|EFL56504.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 636

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 155/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   +I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLF--VIKEEGPGFPFFLPKGMALRNELENFWREVHHDFE 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YDEIRTPIILNKHLWETSGHWDHYRENMYTTI-IDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++ L  R EL     G+ R R F   DA+ F L PE  +    K+   + RI
Sbjct: 350 RDLPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFML-PEQMQSELMKVIELFDRI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + GLK   +   + P            A         +K       P +         
Sbjct: 409 YSQFGLKY-HVELSTKPDNAMGDDAIWEAATEALRNAIEAKGIDYVINPGDGA------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I           +  + G
Sbjct: 461 ----------FYGPKLDYHIEDSLG----------RTWQCGTI-QLDMNLPERFNVEYIG 499

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   M      G+M     ++   + G    W   +AP ++ ++ I    +    
Sbjct: 500 EDGQKHRTIMIHRACFGSMERFIGILTEHYAGAFPTW---MAPVQVKVLPI---SEKHVK 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++      V  DD  E+IG +   A +   P  ++VG K + D+ V ++    
Sbjct: 554 YANQLAKQMRHDYVRVEVDDRNEKIGYKIRQAQMEKVPYMLVVGDKEMEDNSVNVRKHGG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  +E  N         
Sbjct: 614 DELGTVPFDEFFNSIKIEIKER 635


>gi|146282712|ref|YP_001172865.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166225484|sp|A4VM22|SYT_PSEU5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145570917|gb|ABP80023.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 640

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G     N+   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HTQEEAPGMVFWHPAGWTLYQNLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG + +Y + M   +  N +     P +      IF   +KSY
Sbjct: 289 YQEVRTPQVVDRILWEKSGHWSNYAENMFTTSSEN-RDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  K          L++
Sbjct: 348 RDLPLRMAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+    +            P E   +   I 
Sbjct: 407 YADFGFSDIAMKLSTRPAKRVGSDELWDRAEGALAEALNESGLAWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYVA 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G    W   +AP +  ++NI         
Sbjct: 499 EDNSRQRPVMLHRAILGSFERFIGMLIEHYAGAFPAW---LAPTQAVIMNITDK---QAA 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAIEVEKTLVQSGFRAKCDLRNEKIGFKIREHTLLKTPYLLVIGDREVETRSVAVRSREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M LE+     +   S  
Sbjct: 613 VDMGSMPLEQFAQLLAQAVSRR 634


>gi|262281009|ref|ZP_06058792.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257909|gb|EEY76644.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 152/441 (34%), Gaps = 44/441 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       L L    + + + G+  W P G      +   +R+ Q   G +E
Sbjct: 234 RIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYLE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG   +Y   M        +     P +      +F   +KSYR+L
Sbjct: 292 IKTPQIVDFTLWEKSGHAANYADNMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSYRDL 350

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G+MR R F   DA+ F  T E             L ++  
Sbjct: 351 PIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLDVYKD 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + + M+  + P           +A+        +        P E   +   I  + 
Sbjct: 410 FGFEEVQMKLSTRPEKRVGDDALWDMAEKSLADALDAAGLEWELQPGEGAFYGPKIEFSL 469

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                                      K    R  + G I      ++LP  + A++   
Sbjct: 470 ---------------------------KDCLGRVWQCGTI---QCDFNLPERLDASYVTE 499

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D  +D  V +    +G+      ++   + G     P  ++P +  ++NI        +A
Sbjct: 500 DNDRDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPLQACVMNIT---DSQAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           CEK+ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 CEKVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|304436955|ref|ZP_07396918.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369906|gb|EFM23568.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 639

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAAKRDHRKLGRELDLFS--LHEEGPGFPFFHPNGMALRNALLDYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M    + +++     P +      ++RS + SY
Sbjct: 291 YQEISTPVILSRKLWETSGHWFHYRENMYT-TEIDEEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+ F +TP+  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAHLF-VTPDQIEGEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     + E   +A  G  Q       +D+ +   +  F     
Sbjct: 409 YRTFGLTY-KAELSTRPEDSMGTDEMWEMATNGL-QKALDNRGLDYVVNEGDGAFYGPKI 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + +                             R  + G I             T+ G
Sbjct: 467 DFHLRDS--------------------------IGRTWQCGTI-QLDMSLPEKFDLTYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++  ++ G   +W   +AP ++ ++ I    +    
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILIENYAGAFPVW---MAPVQVRILPIT---ERHAA 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++Y ++  +G  V  D   E+ G +   + +   P  ++VG + +    V  +    
Sbjct: 554 YAEELYKKMFDLGLRVEVDARNEKTGYKIRESQVKKTPYTLVVGDQEMESGTVAFRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + + I     + +  
Sbjct: 614 KDSTVLPVADFIALVQEKIATR 635


>gi|299771535|ref|YP_003733561.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701623|gb|ADI92188.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 640

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 152/441 (34%), Gaps = 44/441 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       L L    + + + G+  W P G      +   +R+ Q   G +E
Sbjct: 234 RIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYLE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG   +Y   M        +     P +      +F   +KSYR+L
Sbjct: 292 IKTPQIVDFTLWEKSGHAANYADNMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSYRDL 350

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G+MR R F   DA+ F  T E             L ++  
Sbjct: 351 PIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLDVYKD 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + + M+  + P           +A+        +        P E   +   I  + 
Sbjct: 410 FGFEEVQMKLSTRPEKRVGDDALWDMAEKSLADALDAAGLEWELQPGEGAFYGPKIEFSL 469

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                                      K    R  + G I      ++LP  + A++   
Sbjct: 470 ---------------------------KDCLGRVWQCGTI---QCDFNLPERLDASYVTE 499

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D  +D  V +    +G+      ++   + G     P  ++P +  ++NI        +A
Sbjct: 500 DNDRDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPLQACVMNIT---DSQAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           CEK+ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 CEKVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|301170119|emb|CBW29723.1| threonyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 643

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 157/452 (34%), Gaps = 44/452 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +KY   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAKYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G   +W   +AP +  +INI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPVW---LAPTQAVVINIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ R        ++EE      ++  +    L
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSRELTL 639


>gi|15597940|ref|NP_251434.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|116050734|ref|YP_790445.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891076|ref|YP_002439942.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|254241197|ref|ZP_04934519.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|313107813|ref|ZP_07793987.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|22654141|sp|Q9I099|SYT_PSEAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122259859|sp|Q02NP1|SYT_PSEAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701406|sp|B7V188|SYT_PSEA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9948822|gb|AAG06132.1|AE004702_9 threonyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|115585955|gb|ABJ11970.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126194575|gb|EAZ58638.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|218771301|emb|CAW27066.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|310880489|gb|EFQ39083.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 640

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M   +  + +     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFTTSSES-RDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  K          L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+                 P E   +   I 
Sbjct: 407 YRDFGFTDIAMKLSTRPAKRVGSDELWDRAEGALADALNESGLAWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------KDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G    W   +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLIEHYAGAFPAW---LAPTQAVVMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVVRILGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 613 EDLGSMPVTQFAELLAQAVSRR 634


>gi|114563199|ref|YP_750712.1| threonyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122299726|sp|Q082E1|SYT_SHEFN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114334492|gb|ABI71874.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella
           frigidimarina NCIMB 400]
          Length = 642

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 152/441 (34%), Gaps = 44/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LVRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELEKFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M      N +     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYAEAMFTTNSEN-REYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHVF-CTDDQVQEEVSACIQMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P       +    A+    Q   + +     +P E   +   I  
Sbjct: 409 ATFGFDNIVVKLSTRPEKRIGDDDMWDRAEDALKQALANNNIKYEILPGEGAFYGPKIEF 468

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                             R  + G +      Y+LP  + AT+ 
Sbjct: 469 TL---------------------------HDCLDRAWQCGTV---QLDYALPTRLGATYV 498

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             D      V +    +G++     ++   + GK   W   +AP ++ ++NI        
Sbjct: 499 AEDNSRQTPVMIHRAILGSLERFIGILIEEYAGKFPTW---LAPMQVVVMNITDK---QA 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  E+I     + G    +D   E+IG +     L   P  ++VG + + + +V ++ R 
Sbjct: 553 DYVEEIVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTRD 612

Query: 423 TGIREDMSLEEVINYASHRFS 443
                 + LE+       + S
Sbjct: 613 GIDLGKLKLEDFAAMIRQQIS 633


>gi|226311191|ref|YP_002771085.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094139|dbj|BAH42581.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 637

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 164/446 (36%), Gaps = 41/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L   M  + + G+  +LP G    + +    R  Q 
Sbjct: 231 MDEYLHFIEEAKKRDHRKLGKELGLF--MFSEEAPGMPFYLPKGFTVRNELEQFSRRLQQ 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P L +  LW ESG +D Y + M   ++ ++      P +      I+++ +
Sbjct: 289 LAQYTEVRSPFLMNERLWKESGHWDHYKENMY-FSEVDNATYALKPMNCPGHMLIYKNEM 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + +     R E      G++R R F   DA+ F + P+        M    
Sbjct: 348 HSYRDLPIRYSEFGQVHRHEYSGALNGMLRVRTFCQDDAHVF-VRPDQIASEIKGMITLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G +   +   + P     S E    A++    V   +  M + I   +  F  
Sbjct: 407 DSIYKVFGFEY-SVALSTRPEDSMGSDELWEAAESSLKTVL-EELGMAYEIKDGDGAFYG 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I                    D+L    +     ++    F    K+      T
Sbjct: 465 PKIDFQIT-------------------DALKRRHQCGTIQLD----FQMPEKF----DLT 497

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D + H  V +     G+M     ++   + G   IW   + P +  ++NI    +V
Sbjct: 498 YVGQDNEKHRPVVLHRAMYGSMERFIGILIEHYAGAFPIW---LTPIQARIMNI---SEV 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E++  +L + G  V  D   E+IG +   A +   P  +++G K V+D  + ++ 
Sbjct: 552 HMPYAEQVREKLQQAGIRVELDGRNEKIGYKIREAQVEKIPYMLVIGEKEVADGTLSVRK 611

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G    M+++  +       +  +
Sbjct: 612 RGVGDEGAMTVDAFVEKIRAEINEMK 637


>gi|153855829|ref|ZP_01996815.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
 gi|149751870|gb|EDM61801.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
          Length = 645

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 163/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 233 YLTMLEEAKRRDHRKLGKELGLF--MMCEEGPGFPFFLPKGMVLKNTLLDYWRELHKKAG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      + +     P +      ++++  +SY
Sbjct: 291 YVEVSTPIILSRHLWETSGHWDHYKENMYTTQ-IDGEDFAIKPMNCPGGMLVYKAEPRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    ++ L  R E   +  G+MR R F   DA+ F + PE  +     +      +
Sbjct: 350 KDLPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMM-PEQIRDEIKGVVALIDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E   LA  G                      +D+  
Sbjct: 409 YQLFGFKY-HVELSTRPEDSMGSDEDWELATEGLR-----------------GALNDLGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H                R  + G I     +        + G
Sbjct: 451 DYVVNEGDGAFYGPKIDFHLTDSIG----------RTWQCGTI-QLDMQLPQRFELEYTG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H  + +     G++     ++     G    W   +AP ++ ++ I        +
Sbjct: 500 ADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---SDKHLE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L+  G     D   E+IG +   A +   P  ++VG+K   ++ V ++ R  
Sbjct: 554 YGQKVLDTLNAAGIRAEIDTRAEKIGYKIREAQMQKIPYMLVVGAKEEEENLVSVRSRFA 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SL+E +   +   +  
Sbjct: 614 GDEGQKSLDEFVASVTEEIATR 635


>gi|170721151|ref|YP_001748839.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
 gi|229558042|sp|B1J6U4|SYT_PSEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169759154|gb|ACA72470.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 640

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M   +  + +     P +      +F   +KSY
Sbjct: 289 YSEIKTPQVVDRILWERSGHWSNYAENMFTTSSES-RDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +  K          L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIF-CTEDQVKKEAADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E    A+                 P E   +   I 
Sbjct: 407 YKDFGFTDVAMKLSTRPAKRVGSEELWDRAEGALADALNESGLEWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------RDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G   ++P  +AP +  ++NI        D
Sbjct: 499 EDNARKRPVMLHRAILGSFERFIGMLIEHYAG---VFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALQVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + + +   +H  S  
Sbjct: 613 ADLGSMPVAQFVELLTHAVSRR 634


>gi|238018994|ref|ZP_04599420.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
 gi|237864478|gb|EEP65768.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
          Length = 636

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 155/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   +I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHLLEEAAKRDHRKLGKELGLF--VIKEEGPGFPFFLPKGMALRNELENFWREVHHEFD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +  Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILNKQLWETSGHWFHYRENMYTTI-IDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L P+  +    K+   + RI
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFML-PDQMQSELMKVIELFDRI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + GLK   +   + P            A         +K       P +         
Sbjct: 409 YSQFGLKY-HVELSTKPDNAMGDDAIWEAATEALRNAIEAKGIPYVINPGDGA------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I              + G
Sbjct: 461 ----------FYGPKLDYHIEDSLG----------RTWQCGTI-QLDMNLPERFQIEYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G+M     ++   + G    W   +AP ++ ++ I    +   +
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGILTEHYAGAFPTW---MAPVQVKILPI---SEKHVE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++    
Sbjct: 554 YAKELAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  +E  N         
Sbjct: 614 DELGSIPFDEFFNSIKIEIKER 635


>gi|113970292|ref|YP_734085.1| threonyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|117920487|ref|YP_869679.1| threonyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|123029660|sp|Q0HIT9|SYT_SHESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225501|sp|A0KWV4|SYT_SHESA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113884976|gb|ABI39028.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella sp.
           MR-4]
 gi|117612819|gb|ABK48273.1| threonyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 642

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 154/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLARLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAVKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQVQAEVSSCIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P            A+    Q   + +     +P E   +  
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKRIGDDAMWDRAEEALKQALRANNIEFTILPGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      Y+LP  + 
Sbjct: 465 KIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPSRLG 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D      V +    +G++     ++   + G+   W   +AP ++ ++NI    
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTW---LAPMQVVVMNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 551 --QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M +E+       + S
Sbjct: 609 RTRDGVDLGKMRIEDFAAKIHQQIS 633


>gi|253682125|ref|ZP_04862922.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561837|gb|EES91289.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 637

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 156/446 (34%), Gaps = 42/446 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + +   G   + P G    + +    RE   + G
Sbjct: 231 YLHMLEEAKKRDHRKLGKELGLFD--LKEEGPGFPFFYPKGMTLRNTLENYWREMHEKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW +SG +D Y + M      + +     P +      +++S + SY
Sbjct: 289 YGEIRTPIILNENLWHQSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGSILVYKSDLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R E      G+MR R F   DA+ F +T E        +       
Sbjct: 348 RELPIRLGELGLVHRHEYSGALHGLMRVRNFTQDDAHIF-MTKEQITSEILGVIKMIDNF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E    A  G  +              +   +   I 
Sbjct: 407 YSLFGFEYF-VELSTRPEDSMGSDEDWEAATNGLVKALNEAGLEYKINEGDGAFYGPKID 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G I     +       ++ G
Sbjct: 466 F---------------------------HLRDCLGRTWQCGTI-QLDFQMPERFDLSYVG 497

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H   M      G++     ++   + G    W   +AP ++ ++NI  +     +
Sbjct: 498 ADGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTW---LAPVQVKIMNITDN---QIE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++I   L + G  V  D   E+IG +   A L   P  +++G K ++++ + ++ R  
Sbjct: 552 YCKEIEKTLKENGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNENTIAVRSRKQ 611

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
           G    M L + +             L
Sbjct: 612 GDLGAMQLVDFVAMVKKEVQEKTNNL 637


>gi|302325997|gb|ADL25198.1| threonine--tRNA ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 645

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 93/443 (20%), Positives = 168/443 (37%), Gaps = 49/443 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L  L+E    AE   H+ + +      I  HS G+  W P G K ++ +   IR + 
Sbjct: 239 ETYLKFLEE----AEKRDHRKIGKEMDLYHIEDHSPGMVFWHPKGTKMVNALKDYIRGKI 294

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G +E+  P + +  LW++SG  D Y + M +     D  M   P +      IF + 
Sbjct: 295 DRRGYLEVITPEIVNKTLWIKSGHADKYNENMFKTLA-GDVEMAVKPMNCPCHIQIFNTG 353

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++S+R+LP    +     R E      G+MR R F+  DA+ F  T +            
Sbjct: 354 LRSWRDLPMRLAEFGKCHRYEPAGTMHGLMRVRGFVQDDAHIF-CTEDQIASEVADFCAL 412

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+H  G   I ++  + P     S E    A+    +            P E   + 
Sbjct: 413 VKEIYHDFGFDDIVVKFSTRPEKRVGSDEIWDKAEAALAEATKLAGLDYILNPGEGAFYG 472

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      ++LP  +
Sbjct: 473 PKLEFTL---------------------------KDSLGRDWQCGTI---QVDFNLPQRL 502

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + G D + H  V +    +G++     ++     G   +W   +AP +  ++ I   
Sbjct: 503 GAEYVGKDNQKHIPVMLHRAAVGSIERFLGILIEEFMGDFPLW---LAPVQARVLPI--- 556

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  +++   L   G  V  D+  E++G +    +L   P  +IVG K V+D  V 
Sbjct: 557 SEKFVDYAKQVEKELVNAGVRVEVDESNEKLGYKIRQCELQKVPYLLIVGEKEVADGVVS 616

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           ++ R  G +  M++ + +   + 
Sbjct: 617 VRKRKDGDKGSMTVAQFLEMTAE 639


>gi|258515613|ref|YP_003191835.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779318|gb|ACV63212.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 634

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 155/440 (35%), Gaps = 41/440 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L + M  +   G   + P G    + +    R+E  + G  E
Sbjct: 234 RIEEAKRRDHRKLGAELELFSVM--EEGPGFPFFHPKGMILRNELEKFWRQEHEKRGYQE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +  LW +SG +D Y + M      ++      P +      I++S + SYR  
Sbjct: 292 IRTPIILNRVLWEQSGHWDHYKENMY-FTQIDNFDFAVKPMNCPGSMLIYKSKLHSYREF 350

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++ L  R EL     G+MR R F   DA+ F L P   K     +       +  
Sbjct: 351 PIRMGELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PGQVKDEIIGVIDLVDDFYSI 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G K   +   + P     S E   +A     +   +K   D+ +   +  F        
Sbjct: 410 FGFKY-HVELSTKPEKAMGSDEVWDMATNTLKEAIEAKGL-DYKVNEGDGAF-------- 459

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                   Y    D H E              R  + G I             ++ G DG
Sbjct: 460 --------YGPKIDFHLEDCLG----------RTWQCGTI-QLDFLMPEKFDLSYVGEDG 500

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G++     ++     G    W   +AP ++ ++ I        D   
Sbjct: 501 QKHRPVMLHRVVFGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPIT---DRQSDYAV 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++  RL + G  V  D   E+IG +   A     P  +++G K +    V I+HR  G  
Sbjct: 555 RVVDRLKETGIRVELDQRNEKIGYKIREAQTQKIPYMLVIGDKELEKELVAIRHRSQGDL 614

Query: 427 EDMSLEEVINYASHRFSNNR 446
              +LE+ I+       + +
Sbjct: 615 GISTLEDFIDKLQEEIRDKK 634


>gi|326789266|ref|YP_004307087.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326540030|gb|ADZ81889.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 586

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 98/443 (22%), Positives = 165/443 (37%), Gaps = 47/443 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T  I     G   +LP G    + +    R+   R G
Sbjct: 184 YLQSIEEAKKRDHRKLGKELGLFT--ILDEGPGFPFFLPKGMVLKNLLIDYWRKLHTREG 241

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + + +LW  SG +D Y + M      +D      P +      +++    SY
Sbjct: 242 YVEISTPMMLNKELWETSGHWDHYRENMYT-TVIDDTDFAIKPMNCPGGMLVYKLQPHSY 300

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R E      G+MR R F   DA+ F +T E        +      +
Sbjct: 301 RELPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIF-MTQEQITDEIKGVVRLIDEV 359

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G K   +   + P     S E   +A  G  +    +  +++ I   +  F     
Sbjct: 360 YSKFGFKY-HVELSTRPENSIGSDEDWNVATEGLKKAL-DEMQLEYVINEGDGAF----- 412

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
                      Y    D H E              R  + G I   F    ++     A 
Sbjct: 413 -----------YGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPVRF----EAE 447

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADGK H  + +     G++     ++   + GK  +W   +AP ++ ++ I      
Sbjct: 448 YIGADGKKHRPIMIHRVVFGSIERFIGILIEHYAGKFPLW---LAPVQVKVLPI---SDK 501

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    + A L K G     D+  E+IG +   A L   P  V+VG K V  + V I+ 
Sbjct: 502 FSEYGAFVMAELQKQGIRCEIDNRDEKIGYKIREAQLGKVPYMVVVGQKEVESNLVTIRR 561

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R    +E  S++E +   ++   
Sbjct: 562 RDESTQEGYSIQEFVQLLNNEIE 584


>gi|320539025|ref|ZP_08038700.1| threonyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030958|gb|EFW12962.1| threonyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 642

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTVFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVRAEVNACIRMVYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     + +    A+                      D    ++
Sbjct: 408 YATFGFDKIAVKLSTRPEKRIGTDDMWTRAE---------------------EDLAAALT 446

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            N I  ++     A      E              R  + G +      + LP  +SA++
Sbjct: 447 ENGIPLEYQLGEGAFYGPKIEFTL------HDCLDRAWQCGTV---QLDFFLPGRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D      V +    +G+M     ++   + G    W   +AP ++ ++NI       
Sbjct: 498 VSEDNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTW---IAPVQVVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L   G     D   E+IG +     L   P  ++ G K V    V ++ R
Sbjct: 552 SDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGNVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                    + EV+N       + 
Sbjct: 612 RGKDLGSQDVNEVVNKLLKEIRSR 635


>gi|157962084|ref|YP_001502118.1| threonyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083623|sp|A8H4U6|SYT_SHEPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157847084|gb|ABV87583.1| threonyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 642

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 156/447 (34%), Gaps = 45/447 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IR++
Sbjct: 227 KALKVHLNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y + M   +  N +     P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTSSEN-REYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVQQEVSACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  SI ++  + P       E    A+    Q   + D     +P E   +
Sbjct: 403 MVYDTYETFGFNSIVVKLSTRPEKRIGDDEMWDRAEEALKQALKANDIEFEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   ++P ++ ++NI  
Sbjct: 493 LGATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPAW---LSPVQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++     + G     D   E+IG +     L   P  ++VG + + + +V
Sbjct: 550 KQS---DYVDEVVNLFKEHGIRATKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       M +EE      ++ S
Sbjct: 607 AVRTREGVDLGKMQIEEFATKLKNQIS 633


>gi|153955810|ref|YP_001396575.1| threonyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219856177|ref|YP_002473299.1| hypothetical protein CKR_2834 [Clostridium kluyveri NBRC 12016]
 gi|189083603|sp|A5N258|SYT_CLOK5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783517|sp|B9E5W0|SYT_CLOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146348668|gb|EDK35204.1| ThrS [Clostridium kluyveri DSM 555]
 gi|219569901|dbj|BAH07885.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 637

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 155/444 (34%), Gaps = 42/444 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E   RD      +L L +  IH+   G   + P G    + +    RE   +
Sbjct: 229 QDYLKLMEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMVIRNTLQNFWREMHYK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + + +LW  SG +D Y + M      +D      P +      ++++ I+
Sbjct: 287 ADYSEIMTPIILNEELWHRSGHWDHYKENMY-FTKIDDGNYAIKPMNCPGSILVYKNDIR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + ++ +  R E      G+MR R F   DA+ F +T +       K+     
Sbjct: 346 SYRDLPKRYAEMGVVHRHEKSGALHGLMRVRCFTQDDAHIF-VTKDDIADEIIKVIDLID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   G +   +   + P     S E    A  G                 +   +   
Sbjct: 405 NFYKIFGFEYF-VELSTRPEDSMGSDEDWEAATEGLKNALKMVGLDYKINEGDGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               K    R  + G +     +        +
Sbjct: 464 IDF---------------------------HLKDCIGRTWQCGTV-QLDFQMPEKFDLNY 495

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H  V +     G++     ++   + G    W   +AP ++ ++NI       
Sbjct: 496 IGADGEKHRPVMIHRVVFGSIERFIGILIEHYAGAFPAW---IAPVQVQVMNIT---DAQ 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L +    V  D   E+IG +   A +   P  +I+G K + D  + ++ R
Sbjct: 550 ADYVAEVAKTLKENNIRVECDIRNEKIGYKIREAQMHKVPYMIILGDKEMKDKNISVRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    MSLE+ I          
Sbjct: 610 KEGDIGAMSLEDFILKLKEEIDKK 633


>gi|302874879|ref|YP_003843512.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307690504|ref|ZP_07632950.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577736|gb|ADL51748.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 635

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 156/447 (34%), Gaps = 52/447 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    A+   H+ + +   +        G   +LP G    +++    R    +
Sbjct: 231 YLNMLEE----AKKRDHRKLGKELELFTLLEEGPGFPFFLPKGMIVRNSLEDYWRVIHKK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S +LW +SG +D Y + M      ++K     P +       +++ + 
Sbjct: 287 AGYQEIKTPIILSEELWHQSGHWDHYKENMY-FTSIDEKPFAVKPMNCPGSILAYKNALH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R EL     G+MR R F   DA+ F +T +        +     
Sbjct: 346 SYRELPLRLAELGLVHRHELSGALHGLMRVRCFTQDDAHIF-MTKDQITDELLDLIKLID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   G +   +   + P     S E   LA  G                 +   +   
Sbjct: 405 DFYKNFGFEYF-VELSTRPENSMGSDEDWELATNGLRTALDKAGLSYKINEGDGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
           I                               +    R  + G I   F    ++     
Sbjct: 464 IDF---------------------------HLRDSIGRTWQCGTIQLDFQLPERF----D 492

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DG+ H   M      G++     ++     G    W   +AP ++ ++NI    
Sbjct: 493 IDYIGPDGEKHRPVMVHRVVFGSIERFIGILIEHFAGAFPAW---LAPVQVKVMNITDSS 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      E+I   L + G  V  D   E+IG +   A L   P  +++G K +++  + +
Sbjct: 550 KG---YVEEIARVLEEKGIRVESDLRNEKIGYKIREAQLQKIPYMIVIGEKEMNEKTIAV 606

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G    MS+EE  N       + 
Sbjct: 607 RSRKDGDIGTMSIEEFSNKLLEEIKSK 633


>gi|300703878|ref|YP_003745480.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071541|emb|CBJ42865.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 635

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 150/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYSEVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T                
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEGQIMAEAKDFNDLAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +++ ++    P     + E    A+ G      +       +P E   +   
Sbjct: 405 SVYEDFGFENVAVKLALRPDKRAGTDEIWDHAEEGLRTALRACGVEWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                               K    R  + G +          + A +
Sbjct: 465 VEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+      ++  +H G   +W   +AP ++ +++I       
Sbjct: 497 VSEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLW---LAPEQVVVMSIA---DAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G     D   E+I  +     L   P  V+VG K    ++V ++ R
Sbjct: 551 AEYVQTVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    +  +N 
Sbjct: 611 GNVDLGSMPISAFVERLQNDLANK 634


>gi|168188008|ref|ZP_02622643.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294168|gb|EDS76301.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 637

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 161/451 (35%), Gaps = 48/451 (10%)

Query: 2   RRSKY--FLPILQENPRDAEIASHKLMLR-TGMI--HQHSKGIYSWLPLGQKALDNVNAI 56
           ++S+   +L +L+E    A+   H+ + R  G+    +   G   + P G    + +   
Sbjct: 224 KKSELEEYLHMLEE----AKKRDHRKLGRELGLFDLKEEGPGFPFFYPKGMILRNTLENY 279

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
            RE   + G  E+  P + +  LW +SG +D Y + M      + +     P +      
Sbjct: 280 WREMHEKAGYGEIRTPIILNEKLWHQSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGSIL 338

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +++S + SYR LP    ++ L  R E      G+MR R F   DA+ F +T E       
Sbjct: 339 VYKSDLHSYRELPIRLGELGLVHRHEYSGALHGLMRVRNFTQDDAHIF-MTKEQITSEIL 397

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +       +   G +   +   + P     S E    A  G  +              +
Sbjct: 398 GVIKMIDNFYSLFGFEYF-VELSTRPEDSMGSDEEWEAATNGLVKALNEAGLEYKINEGD 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   I                               +    R  + G I     +  
Sbjct: 457 GAFYGPKIDF---------------------------HLRDCLGRTWQCGTI-QLDFQMP 488

Query: 296 LPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                ++ G DG+ H   M      G++     ++   + G    W   +AP ++ ++NI
Sbjct: 489 ERFDLSYVGPDGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTW---LAPVQVKIMNI 545

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +     + C++I   L++ G  V  D   E+IG +   A L   P  +++G K ++++
Sbjct: 546 TDN---QVEYCKEIQKALNESGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNEN 602

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + ++ R  G    M L++ I          
Sbjct: 603 TIAVRARKQGDLGAMKLDDFIAMVRKEIDEK 633


>gi|70729481|ref|YP_259219.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68343780|gb|AAY91386.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 640

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y + M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYAENMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I M+  + P     S +    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIEMKLSTRPEKRVGSDDLWDRAESALAAALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  + A +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + H V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKHPVMLHRAILGSFERFVGILIEHYEGAFPAW---LAPTQAVVMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 ADFALEVEKTLNQSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M + +   + +   S  
Sbjct: 611 EGEDLGSMPVAQFSAFLAQAVSRR 634


>gi|262374878|ref|ZP_06068112.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309891|gb|EEY91020.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 640

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YVKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y   M      N +     P +      +F   +KSY
Sbjct: 289 YEEIRTPQVVDFTLWEKSGHAANYADNMFTTHSEN-RNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 348 RDLPVRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGPEVADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P       +   +A+        +        P E   +   I 
Sbjct: 407 YKDFGFEEVQMKLSTRPEKRVGDDKLWDMAEKSLADALDAAGLEWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A++
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +D  V +    +G+      ++   + G     P  +AP +  ++NI       
Sbjct: 497 VTEDNDRDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLAPMQACVMNIT---DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +ACE + A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AEACESVVAKLKENGIRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  ++      +  
Sbjct: 611 SGTNLGTMSIDAFVDLVKAAVAER 634


>gi|313896316|ref|ZP_07829869.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975115|gb|EFR40577.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 639

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 159/444 (35%), Gaps = 42/444 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAEKRDHRKLGRELDLFS--LHEEGPGFPFFHPNGMILRNELLNYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M      +++     P +      ++RS + SY
Sbjct: 291 YSEISTPVILSRKLWETSGHWFHYRENMYTTQ-IDEEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+ F +TPE  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAHLF-VTPEQIEGEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E   LA +G  +   ++         +   +   I 
Sbjct: 409 YRTFGLSY-KAELSTRPDDSMGSDEMWELATSGLQKALENRGLDYIVNEGDGAFYGPKID 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G I             T+ G
Sbjct: 468 F---------------------------HLRDSIGRTWQCGTI-QLDMSLPEKFDLTYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++  +  G   +W   + P ++ ++ I    +   +
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILIENFAGAFPVW---MTPVQVRILPIT---ERHAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  R+   G  V  D+  E+ G +   + +   P  ++VG +      V ++    
Sbjct: 554 YAEELRKRMFDRGIRVEVDNRNEKTGYKIRESQVKKTPYTLVVGDQEQESGTVALRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNNRP 447
                MS ++ I +   + +   P
Sbjct: 614 KDSTVMSADDFIAFVEKKIAERSP 637


>gi|77458158|ref|YP_347663.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123758422|sp|Q3KEY2|SYT_PSEPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77382161|gb|ABA73674.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 640

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 151/447 (33%), Gaps = 45/447 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T E  +          + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRAFTQDDAHIF-CTEEQMQAESAAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E    A+        S        P E   +   I 
Sbjct: 407 YRDFGFTDVEMKLSTRPEKRVGSDELWDRAEAALAAALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  + A +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPVRLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + H V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKHPVMLHRAILGSFERFVGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L++ G     D   E+IG +     LL  P  +++G K V    V ++ R
Sbjct: 551 ADFVVQVEKTLNESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDKEVEMQTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN-RP 447
                  M + +   + +   S   RP
Sbjct: 611 EGADLGSMPVAQFAEFLAQAVSRRGRP 637


>gi|302871393|ref|YP_003840029.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574252|gb|ADL42043.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 639

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 163/449 (36%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L    I     G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKKRDHRKLGRELDLFD--IFDEGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  R G  E+  P + + DLW++SG +D Y + M      +D+     P +      ++
Sbjct: 285 EEHKRRGYQEIKTPIMLTKDLWIQSGHWDHYKENMY-FTKIDDQEFAIKPMNCPGSILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPQRLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G K   +   + P     + E   +A+T   +                 
Sbjct: 403 IDLIDYFYSVFGFKY-HVELSTRPENSMGTDEQWNMAETALKEALE-------------- 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              ++     I E   A Y    D H E              R  +   I     +    
Sbjct: 448 ---EVGINYKINEGDGAFYGPKIDFHLEDSL----------KRTWQCATI-QLDFQMPER 493

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG K   V +     G++    A++     G   +W   +AP +I +I +  
Sbjct: 494 FDLYYIGEDGAKHRPVMLHRVVFGSIERFIAILTEHFAGAFPVW---LAPTQIRVIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   KI   L + G  V  D   E +G +   A L   P  VIVG K   ++ +
Sbjct: 551 N---FNDYAAKISQTLKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKENTI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +++E ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDEFVSMVKEKVEKK 636


>gi|261416474|ref|YP_003250157.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372930|gb|ACX75675.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 695

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 93/443 (20%), Positives = 168/443 (37%), Gaps = 49/443 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L  L+E    AE   H+ + +      I  HS G+  W P G K ++ +   IR + 
Sbjct: 289 ETYLKFLEE----AEKRDHRKIGKEMDLYHIEDHSPGMVFWHPKGTKMVNALKDYIRGKI 344

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G +E+  P + +  LW++SG  D Y + M +     D  M   P +      IF + 
Sbjct: 345 DRRGYLEVITPEIVNKTLWIKSGHADKYNENMFKTLA-GDVEMAVKPMNCPCHIQIFNTG 403

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++S+R+LP    +     R E      G+MR R F+  DA+ F  T +            
Sbjct: 404 LRSWRDLPMRLAEFGKCHRYEPAGTMHGLMRVRGFVQDDAHIF-CTEDQIASEVADFCAL 462

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+H  G   I ++  + P     S E    A+    +            P E   + 
Sbjct: 463 VKEIYHDFGFDDIVVKFSTRPEKRVGSDEIWDKAEAALAEATKLAGLDYILNPGEGAFYG 522

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      ++LP  +
Sbjct: 523 PKLEFTL---------------------------KDSLGRDWQCGTI---QVDFNLPQRL 552

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + G D + H  V +    +G++     ++     G   +W   +AP +  ++ I   
Sbjct: 553 GAEYVGKDNQKHIPVMLHRAAVGSIERFLGILIEEFMGDFPLW---LAPVQARVLPI--- 606

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  +++   L   G  V  D+  E++G +    +L   P  +IVG K V+D  V 
Sbjct: 607 SEKFVDYAKQVEKELVNAGVRVEVDESNEKLGYKIRQCELQKVPYLLIVGEKEVADGVVS 666

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           ++ R  G +  M++ + +   + 
Sbjct: 667 VRKRKDGDKGSMTVAQFLEMTAE 689


>gi|152988735|ref|YP_001347870.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166225481|sp|A6V485|SYT_PSEA7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150963893|gb|ABR85918.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 640

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M   A  + +     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFTTASES-RDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  K          L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+                 P E   +   I 
Sbjct: 407 YRDFGFTDIAMKLSTRPAKRVGSDELWDRAEGALADALNESGLAWEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G + Y        + A++  
Sbjct: 467 FTL---------------------------KDCLGRNWQCGTLQYDP-NLPERLDASYIA 498

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G    W   +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLIEHYAGAFPAW---LAPTQAVVMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVVRILGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 613 EDLGSMPVTQFAELLAQAVSRR 634


>gi|118444060|ref|YP_877833.1| threonyl-tRNA synthetase [Clostridium novyi NT]
 gi|166223336|sp|A0PZN1|SYT_CLONN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118134516|gb|ABK61560.1| threonyl-tRNA synthetase [Clostridium novyi NT]
          Length = 637

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + +   G   + P G    + +    RE   +
Sbjct: 229 EEYLHMLEEAKKRDHRKLGKELGLFD--LKEEGPGFPFFYPKGMILRNTLENYWREMHEK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +  LW +SG +D Y + M      + +     P +      +++S + 
Sbjct: 287 AGYGEIRTPIILNEKLWHQSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGSILVYKSDLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R E      G+MR R F   DA+ F +T E        +     
Sbjct: 346 SYRELPIRLGELGLVHRHEYSGALHGLMRVRNFTQDDAHIF-MTKEQITSEILGVIKMID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   G +   +   + P     S E    A  G  +              +   +   
Sbjct: 405 NFYSLFGFEYF-VELSTRPEDSMGSDEDWEAATNGLIKALNEAGLEYKINEGDGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               +    R  + G I     +       ++
Sbjct: 464 IDF---------------------------HLRDCLGRTWQCGTI-QLDFQMPERFDLSY 495

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H   M      G++     ++   + G    W   +AP ++ ++NI  +    
Sbjct: 496 VGADGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTW---LAPVQVKIMNITDN---Q 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + C++I   L++ G  V  D   E+IG +   A L   P  +++G K +++  + ++ R
Sbjct: 550 VEYCKEIQKVLNENGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNEKTIAVRAR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
             G    M+L + +             L
Sbjct: 610 KQGDLGAMNLTDFVAMVKKEIEEKTNCL 637


>gi|53728893|ref|ZP_00134603.2| COG0441: Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126207707|ref|YP_001052932.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|166223315|sp|A3MYU1|SYT_ACTP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126096499|gb|ABN73327.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 643

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 149/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGLVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW  +G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G  +   +          E   + 
Sbjct: 404 VYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLDREWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   LS  G  V  D   E++G +     L   P  ++ G K +   KV 
Sbjct: 549 -DSQADYVQKVTKALSDAGIRVKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        +++E +    ++    
Sbjct: 608 VRTRKGADLGTFTIDEFVEILKNQVKAR 635


>gi|147678291|ref|YP_001212506.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146274388|dbj|BAF60137.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 640

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 152/445 (34%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +  IH    G   + P G    + +    REE  
Sbjct: 233 LDEYLFRLEEAKRRDHRKLGAELDLFS--IHDEGPGFPFFHPKGMILRNELEKFWREEHQ 290

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S +LW  SG ++ Y + M      +D      P +      I+++ +
Sbjct: 291 KRGYQEIRTPVILSRNLWERSGHWEHYRENMY-FTRIDDGDYAVKPMNCPGSILIYKNRL 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +    
Sbjct: 350 HSYRELPIRLAELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQVKEEIIGVIELV 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G     +   + P     S E   +A TG  +       +D+ +   +  F  
Sbjct: 409 DDFYRVFGFPY-HVELSTRPEKAMGSDETWEMA-TGALRDALEARGLDYRVNEGDGAF-- 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                         Y    D H +              R  + G I             T
Sbjct: 465 --------------YGPKIDFHLQDSLG----------RTWQCGTI-QLDFLMPEKFDLT 499

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +     G++     ++     G    W   +AP ++ ++ I      
Sbjct: 500 YIGEDGQKHRPVMIHRVVFGSIERFIGILTEHFAGAFPAW---LAPVQVRVLPIADRHAG 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 K+   L+  G     D   E+IG +   A     P  ++ G K   +  V ++H
Sbjct: 557 ---YARKVLDCLTGAGIRAELDARNEKIGYKIREAQAQKIPYMLVTGDKEAENGTVAVRH 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG    + L   ++       + 
Sbjct: 614 RTTGDMGAIPLGGFVDKLLDEIKSK 638


>gi|253996955|ref|YP_003049019.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983634|gb|ACT48492.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 635

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L      +   + G+  W P G      V   +R+     G
Sbjct: 231 YLFQLEEAEKRDHRKLGKQLDYF--HMQDDAPGMVFWHPRGWSIWQEVEQYMRQMFKSFG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  PT+    LW +SG + +Y   M  +    ++     P +      IF + + SY
Sbjct: 289 YQEVRTPTVMDKTLWEKSGHWQNYRDNMF-VTSSENREYAVKPMNCPGHVQIFNNQLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +           + 
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIEAEVADFIQMLYKA 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     + E    A+        + +      P E   +   I 
Sbjct: 407 YGDFGFNDVLVKLSTRPEKRVGADETWDKAEAALANALNANNLAFDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      ++LP  + A +
Sbjct: 467 FTL---------------------------KDSLGRLWQCGTI---QLDFNLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++  ++ G   +W   +AP ++ ++NI    +  
Sbjct: 497 VAEDNSRQRPVMLHRAIVGSMERFIGILIENYAGAMPLW---LAPVQVMVLNI---SESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G    +D   E+I  +     +   P  ++ G + +    + ++ R
Sbjct: 551 ADYVRQVVETLRQNGIRCEFDLRNEKITYKIREHSMQKMPYLLVAGEREMQAGHLAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M ++ +I          
Sbjct: 611 KGEDLGSMPIDALIERLKAEIEAK 634


>gi|94499191|ref|ZP_01305729.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94428823|gb|EAT13795.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 638

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 156/452 (34%), Gaps = 50/452 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT-GMIHQ--HSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+ + +   + H    + G+  W   G    + +   +R
Sbjct: 227 KALKAYLQRLEE----AEKRDHRKLGKALDLFHWQEEAPGMVFWHSKGWTIYNILEDYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++       E+  P +    +W +SG +D Y   +        +     P +      IF
Sbjct: 283 KKLVEYQYEEVRAPMVMDVSMWEKSGHWDKYQDNIFATESEK-RTYAVKPMNCPGHLQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP+   +  +  R+E      G+MR R F   DA+ F  T E       K 
Sbjct: 342 NQGLKSYRDLPYRMAEFGIVHRNEPSGSLHGLMRVRSFTQDDAHVF-CTEEQILEEVTKC 400

Query: 178 FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                 ++   G   ++ ++  + P     S E    A+ G      + +        E 
Sbjct: 401 IQMVFDVYKDFGFDQNLSVKLSTRPEKRIGSDEIWDKAEKGLADALKANELDYEIQEGEG 460

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I                                    R  + G I      +S+
Sbjct: 461 AFYGPKIEFTLFDC---------------------------LDRAWQCGTI---QLDFSM 490

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  + A +   +G     V +    +G++     ++   + G    W   +AP +  ++N
Sbjct: 491 PGRLGAQYVDENGDRQTPVMIHRAILGSLERFIGILIEHYAGALPTW---LAPTQAMIMN 547

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I  +     D  +K+   L+K G  V  D   E+IG +     L   P  ++ G K V+ 
Sbjct: 548 ITDN---QADYVKKVQQTLAKQGFRVDSDLRNEKIGFKIREHTLQKVPYLLVTGDKEVAS 604

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V ++ R       MSLE+          N 
Sbjct: 605 DAVAVRTRSGEDLGTMSLEDFAKLLESENQNR 636


>gi|312795972|ref|YP_004028894.1| Threonyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167747|emb|CBW74750.1| Threonyl-tRNA synthetase (EC 6.1.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 643

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 146/442 (33%), Gaps = 45/442 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + + G+  W P G      V   +R      G
Sbjct: 239 YLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGLVFWHPKGWALWQQVEQYLRRRLGEAG 296

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F   + SY
Sbjct: 297 YLEVKTPMIMDRSLWERSGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFNHSLHSY 355

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F+  DA+ F  T +             + +
Sbjct: 356 RDLPLRFAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEDQVIAESIAFNSLAMSV 414

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G  +   +       +  E   +   I 
Sbjct: 415 YKDFGFEQIDIKLALRPQQRAGTDETWDRAEQGLREALAACSLQWQELDGEGAFYGPKIE 474

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 475 Y---------------------------HIKDALGRSWQCGT---LQLDFVLPERLGAEY 504

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+M     ++   H G   +W   +AP ++ ++NI    +  
Sbjct: 505 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPLW---LAPSQVVVMNIA---ESS 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +   L K G     D   E+I  +     L   P   +VG K      V ++ R
Sbjct: 559 ADYANIVAQSLKKQGFRAAADLRNEKISYKIREHALEKVPYLAVVGDKERDAQTVAVRAR 618

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  M +E  +    +   
Sbjct: 619 GGVDLGVMPVEAFLERLHNEVR 640


>gi|254491441|ref|ZP_05104620.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224462919|gb|EEF79189.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 641

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 157/453 (34%), Gaps = 45/453 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD    +  L L    + + + G+  W   G +    V   IR+ 
Sbjct: 226 KALKQYLHRLEEAEKRDHRKIAKNLDLF--HLQEEAAGMIFWHDNGWQIYRVVENYIRDV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG +D +G  +      N +     P +      IF  
Sbjct: 284 LRDNDYQEVRTPQVVDRTLWEKSGHWDKFGDMIFSTHSEN-RDYAVKPMNCPCHIQIFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +        
Sbjct: 343 GLKSYRDLPLRMAEFGSCHRNEPSGTLHGLMRLRGFTQDDAHIF-CTEDQIQSEVATFIE 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   I ++  + P     S E    A+        + D      P E   +
Sbjct: 402 LLHEVYADFGFNEIIVKLSTRPENRVGSDEVWDKAEKALEDALNAADLDWELQPGEGAFY 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I  +                            K   +R  + G I      +S+P  
Sbjct: 462 GPKIEFSL---------------------------KDCLSRVWQCGTI---QVDFSMPGR 491

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A F   D  K   V +    +G++     ++   + G    W   +AP ++ ++ I  
Sbjct: 492 LDAHFVADDNSKQVPVMLHRAILGSLERFIGILIEEYAGAFPTW---LAPKQVMVMGI-- 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +K+   L K G  V  D   E+IG +     L   P  ++VG +   D+ V
Sbjct: 547 -SDKQSEYVQKVAKDLQKQGFRVDTDLRNEKIGFKIREHTLRRVPYLIVVGEREAQDNAV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            ++ R       M LE+ +       +    ++
Sbjct: 606 AVRTRKGEDLGAMQLEDFVGLLEKDVARRGRII 638


>gi|167623946|ref|YP_001674240.1| threonyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083622|sp|B0TT20|SYT_SHEHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167353968|gb|ABZ76581.1| threonyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 642

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 155/447 (34%), Gaps = 45/447 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IR++
Sbjct: 227 KALKVHLNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYSDAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVQQEVSACIR 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P       +    A+    +   + D     +P E   +
Sbjct: 403 MVYDTYATFGFSNIVVKLSTRPEKRIGDDDMWDRAEEALKKALKANDIEFEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   ++P ++ ++NI  
Sbjct: 493 LGATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPAW---LSPVQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  + +     + G     D   E+IG +     L   P  ++VG + + +++V
Sbjct: 550 KQS---DYVDNVVNLFKEHGIRATKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENNEV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       M LEE      ++ S
Sbjct: 607 AVRTREGVDLGKMQLEEFATKLKNQIS 633


>gi|307245030|ref|ZP_07527126.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307253984|ref|ZP_07535834.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258439|ref|ZP_07540179.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306854073|gb|EFM86282.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306863062|gb|EFM95006.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867501|gb|EFM99349.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 643

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 149/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGLVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW  +G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G  +   +          E   + 
Sbjct: 404 VYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLDREWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   LS  G  V  D   E++G +     L   P  ++ G K +   KV 
Sbjct: 549 -DSQADYVQKVTKALSDAGIRVKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        +++E +    ++    
Sbjct: 608 VRTRKGADLGTFTIDEFVEILKNQVKAR 635


>gi|323143349|ref|ZP_08078037.1| threonine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416867|gb|EFY07513.1| threonine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 644

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD  +   KL L      Q + G+  W   G      +   +RE  ++  
Sbjct: 232 YLKKREEAAKRDHRVLGKKLDLF--HFQQEAPGMVFWHNDGWTIYRVIENFMREMLHKYH 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P +    LW  SG +D Y + M   +  N +     P +      IF S  +SY
Sbjct: 290 YIEVKTPQIMDRVLWERSGHWDKYAENMFTTSSEN-RDYAIKPMNCPGAIQIFNSRTRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G++R R F   DA+ F  T +      +         
Sbjct: 349 RDLPIRMAEFGNCHRNEPSGSLHGLLRVRAFEQDDAHIF-CTEDQIMTEVSDCIRMVYDT 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     S E    A+    +     +      P E   +   I 
Sbjct: 408 YSNFGFTKVDVKLSTRPEKRIGSDEIWDKAEADLVEALKLNNLEYELQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  + A +
Sbjct: 468 FTL---------------------------HDSLDRAWQCGTV---QLDFSLPARLDAHY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D ++H  V +    +G++     V+     G    W   +AP +  ++NI       
Sbjct: 498 IGEDNQEHTPVMIHRAMLGSIERFLGVLTEEFAGSFPTW---LAPIQAVVMNITDG---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L + G  V  D   +++G +     L+  P  ++ G +      V ++ R
Sbjct: 552 VDYVKQVAQKLDEAGIRVKSDLRNDKVGFKIREHTLMHVPYMLVCGDREAESGMVAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M L+++I        + 
Sbjct: 612 KGQDLGAMKLDDLIKMIKSDIISR 635


>gi|323692417|ref|ZP_08106653.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
 gi|323503557|gb|EGB19383.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
          Length = 645

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 159/447 (35%), Gaps = 52/447 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +++E    A    H+ + R     M+H    G   +LP G +  + +    R+   +
Sbjct: 232 YLRMMEE----ARKRDHRKLGRELGLFMMHDAGPGFPFFLPKGMELKNTLLEYWRQIHKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + +  LW  SG +D Y   M      +++     P +       + S  +
Sbjct: 288 AGYVEISTPVILNRKLWETSGHWDHYKDNMYT-TVIDEEDYAIKPMNCPGGVLAYASEPR 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     
Sbjct: 347 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAHLIN 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K   +   + P     S E   +A  G       +  +D+ +   +  F   
Sbjct: 406 EVYSLFGFKY-HVELSTRPEDSMGSDEDWEMATEGLRSAL-DELGLDYVVNEGDGAF--- 460

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
                        Y    D H E              R  + G I   F    ++     
Sbjct: 461 -------------YGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPQRF----E 493

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I    
Sbjct: 494 LEYTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---S 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + +   L + G     D   E+IG +   A     P  ++VG K   +  V +
Sbjct: 548 DKYADYAKTVLEELEEAGIRAELDTRSEKIGYKIREAQTQKIPYMLVVGQKEEEEGNVSV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     S    I       +  
Sbjct: 608 RSRFAGDEGSDSTAGFIEKIKKEIAGK 634


>gi|167855812|ref|ZP_02478565.1| leucyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853091|gb|EDS24352.1| leucyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 643

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 150/445 (33%), Gaps = 46/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +  +  
Sbjct: 232 YLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +YG  M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHIQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F + PE  +            I
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCM-PEQVESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++  + P     + E    A+        +          E   +   I 
Sbjct: 408 YSTFGFENIQVKLSTRPANSIGTDEMWNKAEADLAAALTANGLAFEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
                                         +    R  + G I   F+   +    +SA+
Sbjct: 468 FAL---------------------------RDCLDREWQCGTIQLDFFLPER----LSAS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D      V +    +G++     +I   + G    W   +AP +  ++NI      
Sbjct: 497 YVAEDNNRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPVQAVVMNIT---DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QAEYVQQVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R         +EE +     +    
Sbjct: 611 RKGADLGTYKVEEFVEMLKKQVRGR 635


>gi|294340009|emb|CAZ88373.1| threonine tRNA synthetase [Thiomonas sp. 3As]
          Length = 639

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G+  W P G      V   +R+    +G
Sbjct: 231 YLHALAEAEKRDHRKLGKELDLF--HFQEEAPGLAFWHPKGWALWQAVEQYMRQVYRDSG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D+Y + M    +   +     P +      IF S ++SY
Sbjct: 289 YQEVKGPQILDVSLWKRSGHWDNYSENMF-FTESEKRQFAVKPMNCPGHIQIFNSGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T +  +          +++
Sbjct: 348 RDLPIRYGEFGSCHRNEPSGALHGLLRVRGFTQDDGHIF-CTEDQIEAEVTAFHQQAMQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+        +       +P E   +   I 
Sbjct: 407 YTDFGFTDIALKIALRPEKRIGEEAVWDKAEAALRAALQACGVAWQELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  +VG +      + +P  + A +
Sbjct: 467 Y---------------------------HMKDSIGRAWQVGTM---QVDFMMPERLDAEY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                +    V +    +G+M     V+   + G   +W   +AP +  ++NI       
Sbjct: 497 VDEHSQRVRPVMLHRAIVGSMERFIGVLIEHYAGAMPLW---LAPVQAVVMNIT---DAQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +   L+K G  V  D   E+I  +     L   P  ++VG +      + ++ R
Sbjct: 551 ADYARSVAQALTKQGFRVELDLRNEKINYKIRENALSKVPYLLVVGDQERDAGTIAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +SLE +    S    + 
Sbjct: 611 GNVNLGVLSLEALTQKLSQEVQSR 634


>gi|294649364|ref|ZP_06726795.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824734|gb|EFF83506.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 640

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 149/441 (33%), Gaps = 44/441 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       L L    + + + G+  W   G      +   +R+ Q   G  E
Sbjct: 234 RIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG   +Y + M        +     P +      +F   +KSYR+L
Sbjct: 292 IKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSYRDL 350

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G+MR R F   DA+ F  T E             L ++  
Sbjct: 351 PIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLDVYKD 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + + M+  + P           +A+                 P E   +   I  + 
Sbjct: 410 FGFEEVQMKLSTRPEKRVGDDALWDIAEKSLADALDDAGLAWDLQPGEGAFYGPKIEFSL 469

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                                      K    R  + G I      ++LP  + A++   
Sbjct: 470 ---------------------------KDCLGRVWQCGTI---QCDFNLPIRLDASYVTE 499

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D +    V +    +G+      ++   + G     P  +AP +  ++NI        DA
Sbjct: 500 DNERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLAPIQACVMNIT---DSQADA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           CE++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 CEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSIDAFIDLVKSAVAER 634


>gi|300691315|ref|YP_003752310.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299078375|emb|CBJ51025.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 635

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 151/444 (34%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R   + 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWEIWQAVEQYMRGRLSN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYREVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T                
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIF-CTEGQIMAEARDFNDLAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +++ ++    P     + +    A+ G      +       +P E   +   
Sbjct: 405 SVYEDFGFENVAVKLALRPDKRAGTDDIWDHAEEGLRTALRACGVEWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +                               K    R  + G +          + A +
Sbjct: 465 VEY---------------------------HIKDAIGRSWQCGTL-QLDLVLPERLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G+      ++  +H G   +W   +AP ++ +++I       
Sbjct: 497 VAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLW---LAPEQVVVMSIA---DAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G     D   E+I  +     L   P  V+VG K    ++V ++ R
Sbjct: 551 AEYAQSVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    +  +N 
Sbjct: 611 GNVDLGSMPVSAFVERLQNDLANK 634


>gi|107102275|ref|ZP_01366193.1| hypothetical protein PaerPA_01003332 [Pseudomonas aeruginosa PACS2]
          Length = 621

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 212 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHG 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M   +  + +     P +      IF   +KSY
Sbjct: 270 YVEVRTPQVVDRILWERSGHWSNYAENMFTTSSES-RDYAVKPMNCPCHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  K          L++
Sbjct: 329 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQVKKEAADFIKLTLQV 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+                 P E   +   I 
Sbjct: 388 YRDFGFTDIAMKLSTRPAKRVGSDELWDRAEGALADALNESGLAWEYQPGEGAFYGPKIE 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G + Y        + A++  
Sbjct: 448 FTL---------------------------KDCLGRNWQCGTLQYDP-NLPERLDASYIA 479

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + G    W   +AP +  ++NI        D
Sbjct: 480 EDNNRKRPVMLHRAILGSFERFIGMLIEHYAGAFPAW---LAPTQAVVMNITDK---QAD 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 534 FAAEVVRILGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 594 EDLGSMPVTQFAELLAQAVSRR 615


>gi|30248961|ref|NP_841031.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
 gi|73919810|sp|Q82VV1|SYT_NITEU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|30138578|emb|CAD84869.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 635

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 155/444 (34%), Gaps = 45/444 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L      + + G+  W P G      +   +R+     G
Sbjct: 231 YLRCLEEAEKRDHRKLGKQLDLF--HTQEEAPGMVYWHPKGWVVWQQIEQYMRQTLAGNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG ++++ + M  + +  ++     P +      +F   ++SY
Sbjct: 289 YVEIRTPQVLDRSLWESSGHWENFRENMF-ITESENRHYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +       K      ++
Sbjct: 348 RDLPLRLAEFGSCHRNEASGALHGLMRVRSFTQDDAHIF-CTEDQILGEVTKFIDLLNQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++  + P+    + +    A+T        K+      P E   +   I 
Sbjct: 407 YINFGFSETLIKLSTRPLKRVGTEDQWDKAETALATALNQKELNWEVQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        +S+P  + A +
Sbjct: 467 FTL---------------------------KDSLGRKWQCGT---LQLDFSMPARLGAGY 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D      V +    +G+M     ++   H G   +W   ++P ++ ++NI  +    
Sbjct: 497 IAEDNTRKIPVMLHRAILGSMERFIGILIEHHAGALPLW---LSPEQVIILNISRN---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + I   L + G     D   E+I  +     +   P  ++VG K + +  V ++ R
Sbjct: 551 AEYAQLITDELKQSGIRASSDLRNEKISYKIREHSMQKIPYLMVVGDKEMENRTVTVRGR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS+E  +  A    +  
Sbjct: 611 AGQDYGAMSVESFVVRAQEEIAKR 634


>gi|285017864|ref|YP_003375575.1| threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473082|emb|CBA15587.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Xanthomonas albilineans]
          Length = 634

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 147/437 (33%), Gaps = 38/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD    +  L L    + +   G+  W P G      V   +R+     G
Sbjct: 232 YILRMEEADKRDHRKIAKALDLF--HLQEEGPGLVFWHPKGWSIWQVVEQYMRKVYRDNG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQQSGHWDNYQDNMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T +  +          L++
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHIF-CTEQQIEAEVTAFHRQALKV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+        +       +P E   +   I 
Sbjct: 408 YTDFGFDDIQIKIALRPEKRLGEDATWDKAEAALRAALGACGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G +Y    S     
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDEHSQ---- 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              K H V +    +G+M     ++   H G   ++P  +AP +  ++NI        D 
Sbjct: 504 ---KRHPVMLHRAIVGSMERFIGILIEHHAG---VFPAWLAPVQAMVMNIT---DAQADY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L+  G  +  D   E+IG +     L   P  ++VG +   +  + ++ R   
Sbjct: 555 VDSVRKLLANQGFRIEADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAIAVRTRSGE 614

Query: 425 IREDMSLEEVINYASHR 441
               MS+ +        
Sbjct: 615 DLGTMSVADFAERLRAE 631


>gi|319897020|ref|YP_004135215.1| threonyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317432524|emb|CBY80883.1| threonyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 643

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 154/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEGGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D      V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNNRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  N 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRNR 635


>gi|225028654|ref|ZP_03717846.1| hypothetical protein EUBHAL_02933 [Eubacterium hallii DSM 3353]
 gi|224954040|gb|EEG35249.1| hypothetical protein EUBHAL_02933 [Eubacterium hallii DSM 3353]
          Length = 591

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 159/449 (35%), Gaps = 54/449 (12%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L T M  +   G   +LP G    + +    R+   R
Sbjct: 182 KDYLNMLEEAKKRDHRKLGKELGLFTIM--EEGPGFPFFLPKGMILKNTLIDYWRKMHTR 239

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+S P L +  LW  SG +D Y + M      +D      P +      +++   +
Sbjct: 240 EGYEEISTPILLNRQLWETSGHWDHYRENMYT-TVIDDMDFAVKPMNCPGGMLVYKMEPR 298

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP    ++ L  R E   +  G+MR R F   DA+ F +T    ++   K+     
Sbjct: 299 SYKELPLRLGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTEAQIENEIQKVVKLID 357

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G     +   + P     + E   +A         + +        +   +   
Sbjct: 358 EVYKKFGFTY-HVELSTRPADSMGTEEEWEVATNALENAIKAMNIPYEVNEGDGAFYGPK 416

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
           +                               +    R  + G I   F    ++     
Sbjct: 417 LDF---------------------------HLQDSIGRTWQCGTIQLDFQLPQRF----E 445

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A + GADG+ H  + +     G++     ++   + GK   W   +AP +  ++ +    
Sbjct: 446 AEYIGADGEKHRPIMIHRVVFGSIERFIGILIEHYAGKFPTW---LAPVQAKVLPV---S 499

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +++   L   G  V  DD  E++G +   A L   P  +I+G K  S   V +
Sbjct: 500 DKFADYAKQVAEALKASGVRVEVDDRDEKLGYKIRQAQLQKVPYMLILGEKEQSAGTVSV 559

Query: 419 KHR------LTGIREDMSLEEVINYASHR 441
           + R       +     MS+EE        
Sbjct: 560 RKRDLIDENDSPELGTMSVEEFAAIIKEE 588


>gi|323484406|ref|ZP_08089772.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
 gi|323402184|gb|EGA94516.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
          Length = 645

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 159/447 (35%), Gaps = 52/447 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +++E    A    H+ + R     M+H    G   +LP G +  + +    R+   +
Sbjct: 232 YLRMMEE----ARKRDHRKLGRELGLFMMHDAGPGFPFFLPKGMELKNTLLEYWRQIHKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + +  LW  SG +D Y   M      +++     P +       + S  +
Sbjct: 288 AGYVEISTPVILNRKLWETSGHWDHYKDNMYT-TVIDEEDYAIKPMNCPGGVLAYASEPR 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     
Sbjct: 347 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAHLIN 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K   +   + P     S E   +A  G       +  +D+ +   +  F   
Sbjct: 406 EVYSLFGFKY-HVELSTRPEDSMGSDEDWEMATEGLRLAL-DELGLDYVVNEGDGAF--- 460

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
                        Y    D H E              R  + G I   F    ++     
Sbjct: 461 -------------YGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPQRF----E 493

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I    
Sbjct: 494 LEYTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---S 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + +   L + G     D   E+IG +   A     P  ++VG K   +  V +
Sbjct: 548 DKYADYAKTVLEELEEAGIRAELDTRSEKIGYKIREAQTQKIPYMLVVGQKEEEEGNVSV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     S    I       +  
Sbjct: 608 RSRFAGDEGSDSTAGFIEKIKKEIAGK 634


>gi|226954309|ref|ZP_03824773.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834935|gb|EEH67318.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 640

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 149/441 (33%), Gaps = 44/441 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       L L    + + + G+  W   G      +   +R+ Q   G  E
Sbjct: 234 RIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG   +Y + M        +     P +      +F   +KSYR+L
Sbjct: 292 IKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSYRDL 350

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G+MR R F   DA+ F  T E             L ++  
Sbjct: 351 PIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGQEVADFIKLTLDVYKD 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + + M+  + P           +A+                 P E   +   I  + 
Sbjct: 410 FGFEEVQMKLSTRPEKRVGDDALWDIAEKSLADALDDAGLAWDLQPGEGAFYGPKIEFSL 469

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                                      K    R  + G I      ++LP  + A++   
Sbjct: 470 ---------------------------KDCLGRVWQCGTI---QCDFNLPIRLDASYVTE 499

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D +    V +    +G+      ++   + G     P  +AP +  ++NI        DA
Sbjct: 500 DNERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLAPIQACVMNIT---DSQADA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           CE++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 CEQVVAKLKESGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSIDAFIDLVKSAVAER 634


>gi|219871154|ref|YP_002475529.1| threonyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|254783524|sp|B8F5H9|SYT_HAEPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219691358|gb|ACL32581.1| threonyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 643

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 151/445 (33%), Gaps = 46/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +  +  
Sbjct: 232 YLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +YG  M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHIQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F + PE  +            I
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCM-PEQVESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++  + P     + E    A+        +          E   +   I 
Sbjct: 408 YSTFGFENIQVKLSTRPANSIGTDEMWNKAEADLAAALTANGLAFEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
                                         +    R  + G I   F+   +    +SA+
Sbjct: 468 FAL---------------------------RDCLDREWQCGTIQLDFFLPER----LSAS 496

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D  +   V +    +G++     +I   + G    W   +AP +  ++NI      
Sbjct: 497 YVAEDNDRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPVQAVVMNIT---DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QAEYVQQVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R         +EE +     +    
Sbjct: 611 RKGADLGTYKVEEFVEMLKKQVRGR 635


>gi|164687668|ref|ZP_02211696.1| hypothetical protein CLOBAR_01310 [Clostridium bartlettii DSM
           16795]
 gi|164603442|gb|EDQ96907.1| hypothetical protein CLOBAR_01310 [Clostridium bartlettii DSM
           16795]
          Length = 639

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 161/448 (35%), Gaps = 42/448 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E   RD      +L L    I +   G   ++P G +  + +    RE    
Sbjct: 229 EAYLHLMEEAKKRDHRKLGKELDLF--FIPEEGPGFPLFMPKGMQLKNALLEFWREVHKE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +E+  P + +  LW  SG +  Y + M  +   +D+     P +       ++S   
Sbjct: 287 DNYVEIETPIILNRHLWETSGHWYHYKENMYTVK-IDDQDFAIKPMNCPGGMLYYKSKPH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+ P    ++    R EL     G+MR R F   DA+ F L PE  K     +     
Sbjct: 346 SYRDFPMRVAELGRVHRHELSGALHGLMRVRAFTQDDAHIFML-PEQIKDEIKDVVRLID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +   +   + P     + E   +A+ G  +              +   +   
Sbjct: 405 SVYKVFGFQY-GIELSTRPEDSMGTDEEWEIAENGLREALEELGLAYEINEGDGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               +    R  + G I     +      AT+
Sbjct: 464 IDF---------------------------HLRDCLGRTWQCGTI-QLDMQLPQRFDATY 495

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H  V +    +G++     ++   + GK  +W   +AP ++ ++ I       
Sbjct: 496 IGQDGEKHRPVMIHRVLLGSIERFIGILIEHYAGKFPVW---IAPTQVKILPI---SDKY 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +   L   G  V  DD  E++G +   A L   P  ++VG K V  + V ++ R
Sbjct: 550 NDYAKAVKDALFAKGLRVEIDDRAEKMGFKIREAQLEKVPYMLVVGEKEVEANAVSVRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
             G    +S++E +        +   V+
Sbjct: 610 DKGEMGSLSVDEFVAMVCKEVEDKVNVI 637


>gi|289422357|ref|ZP_06424203.1| threonine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289157192|gb|EFD05811.1| threonine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 641

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 163/447 (36%), Gaps = 42/447 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L   MI +   G   +LP G     ++     E    
Sbjct: 229 EAYLKMLEEAKKRDHRKIGKELGLF--MIPEEGPGFPLFLPRGTALKQSLMKYWEEIHRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +E+  P + +  LW  SG +  Y + M  +   +++     P +       ++S + 
Sbjct: 287 AHYVEIETPIILNRKLWETSGHWFHYKENMYTVQ-IDEEDYAIKPMNCPGAMLYYKSQLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+ P    +     R EL     G+MR R F   DA+ F L PE  +     +     
Sbjct: 346 SYRDFPMRVGERGRVHRHELSGALHGLMRVRAFTQDDAHIFML-PEQIRDEIKGVVNLID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++ + G     +   + P     + E   +A+ G                 +   +   
Sbjct: 405 KVYTKFGFSY-HVELSTRPEDSMGTDEEWAIAEDGLRGALEELGMDYIVNEGDGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               +    R  + G I     +      AT+
Sbjct: 464 IDF---------------------------HLRDCIGRTWQCGTI-QLDMQLPQRFDATY 495

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H  + +    +G++     ++  ++ GK  +W   +AP ++ ++++       
Sbjct: 496 VGKDGEKHRPIMIHRVALGSIERFIGILIENYAGKFPVW---LAPCQVKVLSV---SDKY 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +++  +L   G  V  DD  E++G +   A L   P  ++VG K +    + ++ R
Sbjct: 550 NEFAKELVEKLFDAGIRVELDDRAEKVGFKIREAQLEKIPYMLVVGEKEMESGLLSVRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
             G    MS++E +     +  +   V
Sbjct: 610 DEGELGQMSIDEFLAKIKKQIEDRENV 636


>gi|307256244|ref|ZP_07538030.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306865263|gb|EFM97160.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 643

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 148/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGLVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW  +G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G  +   +          E   + 
Sbjct: 404 VYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLDREWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV 
Sbjct: 549 -DSQADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        +++E +    ++    
Sbjct: 608 VRTRKGADLGTFTIDEFVEILKNQVKAR 635


>gi|152978995|ref|YP_001344624.1| threonyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171704313|sp|A6VNZ2|SYT_ACTSZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150840718|gb|ABR74689.1| threonyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 643

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTVFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +YG  M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     + E    A+ G                 E   +   I 
Sbjct: 408 YGTFGFTDIAVKLSTRPEKRIGADEMWDRAEQGLANALKHNALEYEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G I      ++LP  ++A++
Sbjct: 468 FAL---------------------------RDCLDREWQCGTI---QLDFALPGRLNASY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G++     +I   + G    W   +AP +  ++NI       
Sbjct: 498 VAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPVQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R
Sbjct: 552 AEYVQKVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                    +E+ I     +    
Sbjct: 612 RGTDLGTYDVEDFIEILKQQVRGR 635


>gi|307249432|ref|ZP_07531421.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858506|gb|EFM90573.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 643

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 148/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW  +G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G  +   +          E   + 
Sbjct: 404 VYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLDREWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV 
Sbjct: 549 -DSQADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        +++E +    ++    
Sbjct: 608 VRTRKGADLGTFTIDEFVEILKNQVKAR 635


>gi|297538938|ref|YP_003674707.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258285|gb|ADI30130.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 635

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L      +   + G+  W P G      V   +R+      
Sbjct: 231 YLFQLEEAEKRDHRKLGKQLDYF--HMQDDAPGMVFWHPRGWSIWQEVEQYMRKMFRDYN 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  PT+    LW +SG + +Y + M  +     +     P +      IF S + SY
Sbjct: 289 YQEVRTPTIMDRTLWEKSGHWQNYREGMF-VTSSESRDYAVKPMNCPGHVQIFNSSLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +           + 
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVEAEVADFIKMLYKA 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     +      A+T         +      P E   +   I 
Sbjct: 407 YGDFGFNDVLVKLSTRPEKRIGTDADWDKAETSLANALKLNNLDFEYQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I          + A +  
Sbjct: 467 FTL---------------------------KDSLGRLWQCGTI-QLDPNLPERLGAEYVA 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  + H V +    +G+M     ++  ++ G   +W   +AP ++ ++NI    +   D
Sbjct: 499 EDNSRKHPVMLHRAIVGSMERFIGILIENYAGAMPLW---LAPVQVMVLNI---SENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L K G    +D   E+I  +     +   P  ++ G + +    V ++ R  
Sbjct: 553 YVRQVVEMLKKNGIRCEFDLRNEKITYKIREHSMQKMPYLLVAGEREMQTGHVAVRTRKG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M +E +I          
Sbjct: 613 EDLGSMPIEALIERLKAEIETK 634


>gi|296135845|ref|YP_003643087.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795967|gb|ADG30757.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 639

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G+  W P G      V   +R+    +G
Sbjct: 231 YLHALAEAEKRDHRKLGKELDLF--HFQEEAPGLAFWHPKGWALWQAVEQYMRQVYRDSG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D+Y + M    +   +     P +      IF S ++SY
Sbjct: 289 YQEVKGPQILDVSLWKRSGHWDNYSENMF-FTESEKRQFAVKPMNCPGHIQIFNSGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T +  +          +++
Sbjct: 348 RDLPIRYGEFGSCHRNEPSGALHGLLRVRGFTQDDGHIF-CTEDQIEAEVTAFHQQAMQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+        +       +P E   +   I 
Sbjct: 407 YTDFGFTDIALKIALRPEKRIGEEAVWDKAEAALRAALQACGVAWQELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  +VG +      + +P  + A +
Sbjct: 467 Y---------------------------HMKDSIGRAWQVGTM---QVDFMMPERLDAEY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                +    V +    +G+M     V+   + G   +W   +AP +  ++NI       
Sbjct: 497 VDEHSQRVRPVMLHRAIVGSMERFIGVLIEHYAGAMPLW---LAPVQTVVMNIT---DAQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +   L+K G  V  D   E+I  +     L   P  ++VG +      + ++ R
Sbjct: 551 ADYARSVAQALTKQGFRVELDLRNEKINYKIRENALSKVPYLLVVGDQERDAGTIAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +SLE +    S    + 
Sbjct: 611 GNVNLGVLSLEALTQKLSQEVQSR 634


>gi|319776351|ref|YP_004138839.1| threonyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|329123506|ref|ZP_08252070.1| threonine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317450942|emb|CBY87169.1| threonyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327471088|gb|EGF16543.1| threonine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 643

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEGGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  N 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRNR 635


>gi|307545104|ref|YP_003897583.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307217128|emb|CBV42398.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 632

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 157/447 (35%), Gaps = 49/447 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + R      + + + G+  W P G      V   +R
Sbjct: 226 KQLKAYLKRLEE----AEKRDHRKLARKLDLFHMQEEAPGMVFWHPRGWTLWQVVEQYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +     G  E+  P +    LW +SG +D+Y   M    +   +     P +      +F
Sbjct: 282 QVYKDGGYQEIRCPQVMDVSLWKKSGHWDNYADGMF-FTESEKREYALKPMNCPGHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S ++SYR LP  + +     R+E      G+MR R F   D + F  T E  +      
Sbjct: 341 NSGLRSYRELPVRYGEFGGCHRNEPSGALHGIMRVRAFTQDDGHVF-CTEEQIEPEVTSF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L+++   G + I ++    P            A+        + D     +P E  
Sbjct: 400 HRQALQVYRDFGFEDIAVKIALRPEKRLGDDAVWDRAEEALRGALRTCDVDWDELPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               K    R  +VG +      + +P
Sbjct: 460 FYGPKIEY---------------------------HMKDCLGREWQVGTM---QVDFMMP 489

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A +   DG+    V +    +G+M     ++   + G   +W   +AP +  ++ I
Sbjct: 490 VRLGAQYVAEDGERRSPVMLHRAIVGSMERFIGILIEHYAGAMPLW---LAPQQAVVLTI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  RD    +  RL K G  V  D   E+IG +     L   P  ++VG K V   
Sbjct: 547 T---DAQRDYATYLEQRLQKKGLRVKADLRNEKIGFKIREHTLQKVPYLLVVGDKEVEAD 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++ R       M+++  I+     
Sbjct: 604 SVAVRSRSGEDLGTMTVDAFIDRIQAE 630


>gi|15837338|ref|NP_298026.1| threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|22654146|sp|Q9PFE2|SYT_XYLFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9105624|gb|AAF83546.1|AE003915_11 threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 635

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 146/430 (33%), Gaps = 39/430 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +DAE   H+ + +      + +   G+  W P G      +   IR     +G  E+  P
Sbjct: 238 QDAEKRDHRKIGKVQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSGYGELRCP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +    LW +SG +D+Y + M    D   +     P +      +F   + SYR+LP  +
Sbjct: 298 QILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRY 356

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R+E      G++R R F   D + F  T    +          L+++   G +
Sbjct: 357 GEFGACHRNEPSGALHGLLRVRGFTQDDGHIF-CTEAQIESEVTAFHRQALQVYADFGFE 415

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            I ++    P            A+        + +     +P E   +   I        
Sbjct: 416 DIQIKIALRPDKRLGDSLSWDKAEAALRAALSACEVEWQELPGEGAFYGPKIEY------ 469

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                          L D++    ++    ++       G +Y             + H 
Sbjct: 470 --------------HLKDAIGRTWQLGTIQVDFMMPGRLGAEYVDE-------RSQRCHP 508

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+M     ++   + G   IWP  +AP ++ + NI        +  E+++  
Sbjct: 509 VMLHRAIVGSMERFIGILIEHYAG---IWPTWLAPVQVVVANIT---DAQYEYAERVHKA 562

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D   E+IG +     L   P  ++VG +   +  V ++         MS+
Sbjct: 563 LLNQGFRVNTDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVAVRTCSREDLGAMSI 622

Query: 432 EEVINYASHR 441
              +      
Sbjct: 623 SAFVERLQAE 632


>gi|212635267|ref|YP_002311792.1| threonyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|226701407|sp|B8CME8|SYT_SHEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212556751|gb|ACJ29205.1| Threonyl-tRNA synthetase, class IIa [Shewanella piezotolerans WP3]
          Length = 642

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 155/447 (34%), Gaps = 45/447 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IR++
Sbjct: 227 KALKVHLNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y   M      + +     P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYADGMFTTNSES-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHVF-CTEEQVQQEVSACIQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G K+I ++  + P       +    A+    Q   S D     +P E   +
Sbjct: 403 MVYDTYETFGFKNIVVKLSTRPEKRIGDDDMWDRAEEALKQALKSNDIEFEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   +AP ++ ++NI  
Sbjct: 493 LGATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTW---LAPQQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E++     + G     D   E+IG +     L   P  ++VG + + + +V
Sbjct: 550 KQS---DYAEEVVNLFKEHGIRATKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       M ++E      ++ S
Sbjct: 607 AVRTREGVDLGKMQIQEFATKLKNQIS 633


>gi|237653686|ref|YP_002890000.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|237624933|gb|ACR01623.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 638

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 151/446 (33%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +++E    AE   H+ + R      I   + G+  W   G      V   +R     
Sbjct: 231 YLHMIEE----AEKRDHRKLGRQLDLFHIQDEAPGMVFWHAKGWTLWQQVEQYLRRTIGE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +  Y   M        +     P +      IF   +K
Sbjct: 287 HGYQEVKTPQIVDRSLWEKSGHWGMYSDLMFTTQSEK-RDYAVKPMNCPCHIQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F       +    +      
Sbjct: 346 SYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRNFVQDDAHIFCA-ESQVQAESAEFIRLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   + ++  + P     + E    A+        ++       P E   +   
Sbjct: 405 QVYQDFGFTDVQVKLSTRPEKRVGTDEQWDAAEAALAAALDAQGLQYELQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G        ++LP  + A
Sbjct: 465 IEFSL---------------------------KDCLGRVWQCGT---LQLDFNLPVRLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  K   V +    +G++     ++   H G   +W   +AP +  ++NI    +
Sbjct: 495 EYVDEDNTKKVPVMLHRAILGSLERFIGILIEHHAGAMPLW---LAPVQAVVMNI---SE 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E+  ARL K G  V  D   E+I  +     +   P Q+++G K  +   V ++
Sbjct: 549 GQAEYAEEAVARLKKAGFRVEADLRNEKINYKIREHSVQKLPYQIVIGEKEKAAGLVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       MSL+ +I          
Sbjct: 609 ARGGQDLGQMSLDSLIERWRREVEAK 634


>gi|88859310|ref|ZP_01133950.1| threonyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88818327|gb|EAR28142.1| threonyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 636

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 152/451 (33%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++   +L  L+E    AE   H+ + +   +    + + G+  W   G      +   +R
Sbjct: 227 KQLAAYLKRLEE----AEKRDHRKIGKALDLWHWQEEAPGMVFWHNDGWSIYRELEDFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+       E+  P +    LW +SG +D Y   M        +     P +      IF
Sbjct: 283 EKLREYKYEEVKGPLMMDRSLWEKSGHWDKYADAMFTTVSEK-REYAIKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVMDEVSAC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G + I ++  + P            ++    +           +P E  
Sbjct: 401 IKMVYDTYETFGFEKIVVKLSTRPENRIGDDATWDQSEKALAEALTHNGIEFDYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      ++LP
Sbjct: 461 FYGPKIEFTLYDC---------------------------LDRAWQCGTV---QLDFALP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   + +    V +    +G++     ++   + G    W   +AP ++ ++NI
Sbjct: 491 GRLGATYVAENNERRTPVMIHRAILGSIERFIGILTEEYAGLFPTW---LAPKQVVVMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D C  I  +L+K+G     D   E+IG +     L   P  ++VG K V   
Sbjct: 548 TDK---QADYCHNIVEKLNKLGFRACADLRNEKIGFKIREHTLKRIPYLLVVGDKEVEQE 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +V ++ R         +++ I   S    N 
Sbjct: 605 EVAVRTRTGDDLGKFKVDDFIAKLSDEIKNR 635


>gi|238898885|ref|YP_002924567.1| threonine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259516538|sp|C4K776|SYT_HAMD5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229466645|gb|ACQ68419.1| threonine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 638

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD         L      + + G+  W   G      +  +IRE+     
Sbjct: 232 YLNRLEEATKRDHRKIGKTQDLY--HFQEEAPGMVFWHENGWIVFRELEILIREKLKEYE 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M      N +     P +     +IF+  +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYSENMFTTLSEN-REYCIKPMNCPGHLEIFKQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   +        I
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEKQVRKEVSNCIKMTYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+     V   +       P E   +   I 
Sbjct: 408 YQTFGFKKIAVKLSTRPEKRIGSDEIWTQAEEDLASVLKEQGITFELQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  ++A +
Sbjct: 468 FTLYDC---------------------------LDRAWQCGTV---QLDFSLPVRLNAFY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G++     ++   + G   +W   +AP ++ LINI    +  
Sbjct: 498 IDENSERQVPVMIHRAILGSIERFIGILTEEYAGFFPVW---LAPVQVMLINIT---EKQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   L ++G     D   E+IG +     L   P  ++ G K V  +++ ++  
Sbjct: 552 SDYVKKVAKNLQQLGVRAKVDLRNEKIGFKIRQHTLYRIPYILVCGDKEVESNQIAVRTH 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                   S+    +      S+ 
Sbjct: 612 SGKDLGSFSVNVFADKLLEEISSR 635


>gi|303257521|ref|ZP_07343533.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000214|ref|ZP_08323898.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859491|gb|EFL82570.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329572380|gb|EGG54033.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 641

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 151/444 (34%), Gaps = 39/444 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + + G+  W   G      V   +R       
Sbjct: 231 YLHMLEEAEKRDHRRLGKELDLF--HFQEEAPGLIFWHARGWALWQQVEQYMRRVYQDND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG +  Y + M      N +     P +      IF S ++SY
Sbjct: 289 YQEVKAPQLLDRSLWEKSGHWSKYKENMFTTESEN-RYYALKPMNCPGHIQIFNSAVRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F  T +              ++
Sbjct: 348 RDLPIRYGEFGACHRNEPSGSLHGLMRVRGFTQDDGHIF-CTEDQILSECTAYTKLVQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P            A+        +       +P E   +   I 
Sbjct: 407 YADYGFTDISYKIATRPEKRIGDDATWDKAEKALMDALDASGIKYDILPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L DSL    +     ++       G +Y          
Sbjct: 467 Y--------------------HLRDSLGRGWQCGTIQVDFQMPARLGAEY-------VTE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           ++G+   V +    +G++     ++   + G+    P  +AP ++++ NI        D 
Sbjct: 500 SNGRATPVMLHRAIVGSLERFIGMLLEHYAGQ---LPPWLAPVQVAVANITDD---QADY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++ + L K G     D    +I  +     L   P  ++VG+K  ++ KV ++ R   
Sbjct: 554 AKEVVSMLKKAGLRAEADLRNGKITYKIRELSLQKLPYILVVGAKEKAEGKVAVRVRGGK 613

Query: 425 IREDMSLEEVINYASHRFSNNRPV 448
               MS+E+ I       +  R V
Sbjct: 614 DLGAMSVEDFIKLVQEDVATRRNV 637


>gi|306820889|ref|ZP_07454509.1| threonine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551003|gb|EFM38974.1| threonine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 641

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 159/448 (35%), Gaps = 42/448 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           R    +L +L+E   RD      +L L +  +H+   G   + P G    + +    REE
Sbjct: 226 RELDEYLKLLEEAKLRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMVLRNTLEKFWREE 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +  LW +SG +D Y + M      + +     P +       +++
Sbjct: 284 HEKAGYDEIKTPIILNEALWHQSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGSILTYKT 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H+ SYR+LP  + ++    R EL     G+MR R F   DA+ + L P   K     +  
Sbjct: 343 HLFSYRDLPLRWAEMGQVHRHELSGALHGLMRVRTFTQDDAHLYVL-PSQVKDELIGVIE 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+     K   +   + P     + E   +A  G       K+        +   +
Sbjct: 402 LADYIYSIFNFKY-HVELSTRPENSMGTQEQWDIATNGLIAALEEKNIKYIVNEGDGAFY 460

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I                               +    R  + G I     +      
Sbjct: 461 GPKIDF---------------------------HLQDAIGRTWQCGTI-QLDFQMPERFD 492

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +  ++  K   V +     G++     ++     GK  +W   ++P ++ ++ I    
Sbjct: 493 IHYIDSNNEKQRPVMLHRTVFGSIERFIGILIEHFAGKFPLW---LSPVQVKILPI---S 546

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++ + L K+G  V  D   E+IG +   A L   P  +++G K V ++ + +
Sbjct: 547 DKFIDYAYEVQSELKKLGIRVNVDARAEKIGFKIREAQLEKVPYMLVIGEKEVENNTLSV 606

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R  G    M  EEVI          +
Sbjct: 607 RSRDLGDLGSMKKEEVIEKFVKEIEEKK 634


>gi|91793061|ref|YP_562712.1| threonyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123060978|sp|Q12NI7|SYT_SHEDO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91715063|gb|ABE54989.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella
           denitrificans OS217]
          Length = 642

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 155/449 (34%), Gaps = 45/449 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IR++
Sbjct: 227 KALKTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y   M      N +     P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRALWERSGHWDKYSDAMFTTNSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTDDQVQKEVSDCIQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G ++I ++  + P       +    A+    Q   + +     +P E   +
Sbjct: 403 MVYDTYATFGFENIVVKLSTRPEKRIGDDDMWDRAEEALKQALIANEIEFEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPSR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   +AP ++ ++NI  
Sbjct: 493 LGATYVAEDNTRQTPVMIHRAILGSLERFLGILIEEYAGKFPTW---LAPMQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  + +     + G    +D   E+IG +     L   P  ++VG + + + +V
Sbjct: 550 K---QADYVQDVVKIFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       MS+E+         S+ 
Sbjct: 607 AVRTRDGIDLGKMSIEDFAKKIHKDISSR 635


>gi|119897370|ref|YP_932583.1| threonyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|166223320|sp|A1K4E1|SYT_AZOSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119669783|emb|CAL93696.1| ThrS protein [Azoarcus sp. BH72]
          Length = 638

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 157/446 (35%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R      I + + G+  W   G      V   +R   +R
Sbjct: 231 YLHMLEE----AEKRDHRKLGRQLDLFHIQEEAPGMVFWHAKGWTLWQQVEQYLRGTISR 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +  Y   M              P +      IF   +K
Sbjct: 287 HGYQEVRTPQIVDRSLWEKSGHWGMYSDLMFTTQSEK-HDYAVKPMNCPCHIQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T E  +           
Sbjct: 346 SYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRNFVQDDAHIF-CTDEQVQEEAAAFIALLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G + I ++  + P     + E    A+        ++       P E   +   
Sbjct: 405 KVYADFGFRDIQIKLSTRPEKRVGADEQWDAAEAALAAALKAQGLEYELQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G        ++LP  + A
Sbjct: 465 IEFSL---------------------------KDCLNRVWQCGT---LQLDFNLPVRLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  K   V +    +G++     ++   + G   +W   +AP    ++NI    +
Sbjct: 495 EYVAEDNTKKFPVMLHRAIVGSLERFIGILIEHYAGAMPLW---LAPVHAVVMNI---SE 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  RL + G  V  D   E+I  +     +   P Q++VG K  +   V ++
Sbjct: 549 GQADYATEVVNRLREAGFRVEADLRNEKINYKIREHSVHKLPYQLVVGEKEKAAGVVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       +SL+++I   +   ++ 
Sbjct: 609 VRGGQDLGQLSLDKLIERWNGELASR 634


>gi|307198619|gb|EFN79469.1| Probable prolyl-tRNA synthetase, mitochondrial [Harpegnathos
           saltator]
          Length = 434

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 137/444 (30%), Positives = 219/444 (49%), Gaps = 42/444 (9%)

Query: 2   RRSKYFLPI---LQENPRDAEI--ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R SK F P+   +  N    EI   S+KLM+  G+I   S G+YS LPLG + L+ +  I
Sbjct: 11  RTSKIFQPLPSGIFANKDKTEILSKSYKLMINYGIIKSVSTGMYSILPLGMRVLNKLIKI 70

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           I +E    GA ++ +P L SA LW +S RY+S   E+  + DR+DK  I  PT+EE + D
Sbjct: 71  IDKEMTDLGAEKIMLPALTSAKLWKKSNRYNSNKTELFTVTDRHDKEYILSPTYEEAICD 130

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +  +     ++LP   YQI  K+RDE++PR G +RSREF+MKD Y+FD T   ++ +YN 
Sbjct: 131 LVSATYLPEKSLPLRLYQISSKWRDEMKPRLGFIRSREFIMKDLYTFDTTLNKAQDTYNL 190

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  SY  IF ++G+  +    + G IGG  SHE+  ++D GE  +            S N
Sbjct: 191 VCESYSNIFKQIGIDHMKAVGDVGTIGGLSSHEYHYISDIGEDVILWCS--------SCN 242

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              ++IIS  +   +        +                     +E+GH F   TKYS 
Sbjct: 243 YTINEIISKITTCPECKGELQRHNS--------------------VEIGHTFLLNTKYSQ 282

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK- 355
           P++A +   + K   + MG YG+G  R+ A ++E       + WP  +AP+   +I  K 
Sbjct: 283 PLNAMYI-ENNKLKPMIMGCYGLGVSRIFALIVEILSTNNEMRWPTKLAPYTACIIPPKT 341

Query: 356 -AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
            + ++      E+++  L K   D   DD  +  IG +   A  +G+P  +++G    + 
Sbjct: 342 GSKEEYISAYIEQLFEILQKRDIDTILDDRTQFTIGKRLVYARAIGYPYIIVIGK--AAT 399

Query: 414 SKV---EIKHRLTGIREDMSLEEV 434
             +   EI      +   +SLE++
Sbjct: 400 QSIPLFEIHDINNSVSHKLSLEQI 423


>gi|291557532|emb|CBL34649.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           siraeum V10Sc8a]
          Length = 639

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 102/451 (22%), Positives = 166/451 (36%), Gaps = 48/451 (10%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L T M      G   +LP G    + +    R
Sbjct: 225 KASELEAYLNMIEEAKKRDHRKLGKELELFTIM--DEGPGFPFFLPKGMTLKNTLIDYWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   R G +E+S P + +  LW  SG +D Y + M      +D      P +      ++
Sbjct: 283 QIHTRDGYVEISTPIMLNRQLWETSGHWDHYKENMYT-TVIDDTEFAIKPMNCPGGILVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S  +SYR+LP    ++ L  R E      G+MR R F   DA+ F +TP+        +
Sbjct: 342 KSKPRSYRDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIF-MTPDQITDEIKGV 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P     S E   +A  G  +   S             
Sbjct: 401 VRLIDEVYKLFGFKY-HVELSTQPEDSMGSQEDWDMATEGLRKALDS------------- 446

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               +     + E   A Y    D H E              R  + G I      + LP
Sbjct: 447 ----LGLPYVVNEGDGAFYGPKIDFHLEDSLG----------RTWQCGTI---QLDFQLP 489

Query: 298 M--SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           M     + GADG+ H  + +     G++     ++     G   IW   +AP ++ L+ I
Sbjct: 490 MRFELEYTGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   K+ A L K G  V  D   E+IG +   A L   P  +++G K V   
Sbjct: 547 ADR---HNEFTSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETE 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V I+ R  G    MS+ +  +         
Sbjct: 604 NVSIRCRKRGDIGTMSVADFCDMVEKEIREK 634


>gi|167749880|ref|ZP_02422007.1| hypothetical protein EUBSIR_00848 [Eubacterium siraeum DSM 15702]
 gi|167657192|gb|EDS01322.1| hypothetical protein EUBSIR_00848 [Eubacterium siraeum DSM 15702]
          Length = 639

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 102/451 (22%), Positives = 166/451 (36%), Gaps = 48/451 (10%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L T M      G   +LP G    + +    R
Sbjct: 225 KASELEAYLNMIEEAKKRDHRKLGKELELFTIM--DEGPGFPFFLPKGMTLKNTLIDYWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   R G +E+S P + +  LW  SG +D Y + M      +D      P +      ++
Sbjct: 283 QIHTRDGYVEISTPIMLNRQLWETSGHWDHYKENMYT-TVIDDTEFAIKPMNCPGGILVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S  +SYR+LP    ++ L  R E      G+MR R F   DA+ F +TP+        +
Sbjct: 342 KSKPRSYRDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIF-MTPDQITDEIKGV 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P     S E   +A  G  +   S             
Sbjct: 401 VRLIDEVYKLFGFKY-HVELSTQPEDSMGSQEDWDMATEGLRKALDS------------- 446

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               +     + E   A Y    D H E              R  + G I      + LP
Sbjct: 447 ----LGLPYVVNEGDGAFYGPKIDFHLEDSLG----------RTWQCGTI---QLDFQLP 489

Query: 298 M--SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           M     + GADG+ H  + +     G++     ++     G   IW   +AP ++ L+ I
Sbjct: 490 MRFELEYTGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   K+ A L K G  V  D   E+IG +   A L   P  +++G K V   
Sbjct: 547 ADR---HNEFTSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETE 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V I+ R  G    MS+ +  +         
Sbjct: 604 NVSIRCRKRGDIGTMSVSDFCDMVEKEIREK 634


>gi|167746735|ref|ZP_02418862.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
 gi|167653695|gb|EDR97824.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
          Length = 644

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 99/447 (22%), Positives = 165/447 (36%), Gaps = 48/447 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      +L L   M+     G   +LP G    + +    RE  N+
Sbjct: 228 KDYLTMMEEAKKRDHRKLGKELGLF--MMRDEGPGFPFFLPNGMVLKNTLLDYWREIHNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + S  LW  SG +D Y + M      +++     P +      +++S  +
Sbjct: 286 AGYVEISSPIMLSRHLWETSGHWDHYQENMYT-TVIDEEDFAIKPMNCPGGVLVYQSEPR 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F + PE  K     +     
Sbjct: 345 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMM-PEQIKDEIKGVAALID 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G K   +   + P     S E   +A                   S  +  DD+
Sbjct: 404 QVYSLFGFKY-HVELSTRPEDSMGSDEDWEMA-----------------TDSLRSALDDL 445

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
                + E   A Y    D H E              R  + G I   F    ++     
Sbjct: 446 GLDYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF----D 491

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GADG+ H  + +     G++     ++     G    W   +AP ++ +I I    
Sbjct: 492 LHYTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVIPI---S 545

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L   G     D   E++G +   A L   P  ++VG K   +  V +
Sbjct: 546 DKHLDYGTKVLDALKAAGIRAEIDTRAEKMGYKIREAQLHKIPYMLVVGGKEEENQAVSV 605

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G    MSL++ I          
Sbjct: 606 RSRFKGDEGQMSLDDFICAIRKEIETK 632


>gi|166032032|ref|ZP_02234861.1| hypothetical protein DORFOR_01734 [Dorea formicigenerans ATCC
           27755]
 gi|166028485|gb|EDR47242.1| hypothetical protein DORFOR_01734 [Dorea formicigenerans ATCC
           27755]
          Length = 643

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 158/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 230 YLTMLEEAKKRDHRKLGKELGLF--MMCEEGPGFPFFLPKGMVLKNTLLDYWRELHKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      + +     P +      ++++  +SY
Sbjct: 288 YVEVSTPIILSRHLWETSGHWDHYKENMYTTQ-IDGEDYAIKPMNCPGGMLVYKAEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    ++ L  R E   +  G+MR R F   DA+ F + PE  +     +      +
Sbjct: 347 KDLPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMM-PEQIRDEIKGVVALIDEV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     + E   LA  G                      +D+  
Sbjct: 406 YSLFGFKY-HVELSTRPENSMGTDEDWELATEGLR-----------------GALNDLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H                R  + G I     +        + G
Sbjct: 448 DYVVNEGDGAFYGPKIDFHLTDSIG----------RTWQCGTI-QLDMQLPQRFELEYTG 496

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H  + +     G++     ++     G    W   +AP ++ ++ I        D
Sbjct: 497 ADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---SDKYMD 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L+  G     D   E+IG +   A +   P  ++VG K      V ++ R  
Sbjct: 551 YANKVLDELNAAGVRAEVDSRAEKIGYKIREAQMQKIPYMLVVGEKEQEADLVSVRSRFA 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     +LE  I       ++ 
Sbjct: 611 GDEGQKNLETFIADIQKEIADR 632


>gi|165975675|ref|YP_001651268.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|190149490|ref|YP_001968015.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251658|ref|ZP_07337831.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251749|ref|ZP_07533652.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307260677|ref|ZP_07542367.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|307262809|ref|ZP_07544434.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|238687519|sp|B0BSM2|SYT_ACTPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238692375|sp|B3H061|SYT_ACTP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|165875776|gb|ABY68824.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|189914621|gb|ACE60873.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649500|gb|EFL79683.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860750|gb|EFM92760.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306869598|gb|EFN01385.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306871824|gb|EFN03543.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 643

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 148/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGLVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW  +G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G  +   +          E   + 
Sbjct: 404 VYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLDREWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV 
Sbjct: 549 -DSQADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        +++E +    ++    
Sbjct: 608 VRTRKGADLGTFTIDEFVEILKNQVKAR 635


>gi|294793964|ref|ZP_06759101.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455534|gb|EFG23906.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 636

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 153/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   +I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLF--VIKEEGPGFPFFLPKGMALRNELENFWREVHHEFE 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +  Y + M      +++     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILNKQLWETSGHWFHYRENMYTTI-IDEEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L P   +    K+   + RI
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFML-PSQMQSELMKVIELFDRI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + GLK   +   + P            A         +K       P +         
Sbjct: 409 YSQFGLKY-HVELSTKPDNAMGDDAIWEAATEALRNAIEAKGIPYVINPGDGA------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I              + G
Sbjct: 461 ----------FYGPKLDYHIEDSLG----------RTWQCGTI-QLDMNLPERFQIEYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G+M     ++   + G    W   +AP ++ ++ I    +   +
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGILTEHYAGAFPTW---MAPVQVKILPI---SEKHVE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++    
Sbjct: 554 YAKDLAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  EE  N         
Sbjct: 614 DELGSVPFEEFFNSIKTEIKER 635


>gi|146295981|ref|YP_001179752.1| threonyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409557|gb|ABP66561.1| Ser-tRNA(Thr) hydrolase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 639

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 164/449 (36%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E  R D      +L L    I +   G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKRRDHRKLGRELDLFD--IFEQGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + DLWV+SG +D Y + M      +D+     P +      ++
Sbjct: 285 EEHKKRGYQEIKTPIMLTKDLWVQSGHWDHYKENMY-FTKIDDQEFAIKPMNCPGSILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPERLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G K   +   + P     + E   +A+T   +                 
Sbjct: 403 IDLIDYFYSVFGFKY-HVELSTRPENSMGTDEQWNMAETALKEALE-------------- 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              ++     I E   A Y    D H E              R  +   I     +    
Sbjct: 448 ---EVGINYKINEGDGAFYGPKIDFHLEDSL----------KRTWQCATI-QLDFQMPER 493

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG K   V +     G++    A++     G   +W   +AP +I +I +  
Sbjct: 494 FDLYYIGEDGAKHRPVMLHRVVFGSIERFIAILTEHFAGAFPVW---LAPIQIRVIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   KI   L + G  V  D   E +G +   A L   P  VIVG K   ++ +
Sbjct: 551 N---FNDYAAKISQTLKENGFRVEEDFRSETVGYKIRDAQLQKIPYMVIVGEKERRENTI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     ++++ ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDKFVSMVKEKVEKK 636


>gi|269798232|ref|YP_003312132.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094861|gb|ACZ24852.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 636

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 153/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   +I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLF--VIKEEGPGFPFFLPKGMALRNELENFWREVHHEFE 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +  Y + M      +++     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILNKQLWETSGHWFHYRENMYTTI-IDEEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L P   +    K+   + RI
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFML-PSQMQSELMKVIELFDRI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + GLK   +   + P            A         +K       P +         
Sbjct: 409 YSQFGLKY-HVELSTKPDNAMGDDAIWEAATEALRNAIEAKGIPYVINPGDGA------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H E              R  + G I              + G
Sbjct: 461 ----------FYGPKLDYHIEDSLG----------RTWQCGTI-QLDMNLPERFQIEYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +     G+M     ++   + G    W   +AP ++ ++ I    +   +
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGILTEHYAGAFPTW---MAPVQVKILPI---SEKHVE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++    
Sbjct: 554 YAKDLAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  EE  N         
Sbjct: 614 DELGSVPFEEFFNSIKTEIKER 635


>gi|72381873|ref|YP_291228.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123759915|sp|Q46LV3|SYT_PROMT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72001723|gb|AAZ57525.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. NATL2A]
          Length = 641

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 165/451 (36%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  ++E    AE   H+ + +        + + G+  W P G      +   IR
Sbjct: 226 KELKEYLSRIEE----AEKRDHRKLGKKYSLFHSQEEAPGMVFWHPKGWTIYRILEDFIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E   +    E+  P +    LW +SG +D + ++M      N +     P +      IF
Sbjct: 282 ETITKYDYQEVKSPQVVDRSLWEKSGHWDKFKEDMFTTTSEN-REYAIKPMNCPCHIQIF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T E  +      
Sbjct: 341 NQGLKSYRDLPIRLSEFGSCHRNEPSGALHGLMRVRNFVQDDAHIF-CTDEQIQEEVQNF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G  SI ++  + P+    S +    ++   ++   SK      +P E  
Sbjct: 400 IDLVFEVYKTFGFDSILIKLSTRPVKRVGSDDIWDKSEKALSEALDSKGLDWSLLPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            K    R  + G I      +S+P
Sbjct: 460 FYGPKIEFSL---------------------------KDCLNRVWQCGTI---QVDFSMP 489

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             ++A++    G+    V +    +G+      ++  ++ G    W   ++P +I ++ I
Sbjct: 490 QRLNASYIDITGRKQTPVMLHRAILGSFERFIGILIENYSGNFPTW---LSPIQIMIMGI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +    +AC     +L   G     D   E++G +     +   P  +I+G K   +S
Sbjct: 547 TDRN---NEACFTAKDKLVDFGFRAEIDIRNEKVGFKIREHTMQRIPFLIIIGDKEEENS 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ ++ R      +MS+++         S  
Sbjct: 604 EISVRTREGKDLGNMSIDKFKLIIDESISKK 634


>gi|291533300|emb|CBL06413.1| threonyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 423

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 151/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   + G
Sbjct: 19  YLKMLEEAAKRDHRKLGKELDLFS--LHEEGPGFPFFHPNGMVIRNELINYWREVHRQFG 76

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      + +     P +      ++ +   SY
Sbjct: 77  YQEIKTPMIMNRKLWETSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGGMLVYLTQQHSY 135

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F L P   +    ++   + ++
Sbjct: 136 RDLPLRLGELGLVHRHELSGALHGLMRVRNFTQDDAHIFML-PNQIEDEIQRVIDLFDKV 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E    A          +         +   +   I 
Sbjct: 195 YSTFGLTY-HAELSTRPEDSMGSDEVWETATNALRNALEHRGLKYVINEGDGAFYGPKID 253

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +                                 R  + G I             T+ G
Sbjct: 254 FHLTDS---------------------------IGRTWQCGTI-QLDMLMPEKFDLTYIG 285

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++  ++ G    W   +AP ++ ++ I        D
Sbjct: 286 EDGQKHRPVMIHRVVYGSIERFIGILIENYAGAFPAW---LAPVQVKILPI---SDKYVD 339

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I  ++  +G  V  DD  E+IG +   A +   P  +IVG   + +  + ++ R  
Sbjct: 340 YAYEIKRKMFDLGIRVEVDDRNEKIGYKIREAQVKKVPYSIIVGESELENKNISVRKRRE 399

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M  +  IN         
Sbjct: 400 KDTVTMDTDTFINNLLEEIKTK 421


>gi|229167201|ref|ZP_04294942.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228616239|gb|EEK73323.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 639

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 164/447 (36%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q
Sbjct: 231 KLEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N     E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F++ 
Sbjct: 289 NEYNYQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDHKSFALKPMNCPGHMLMFKNK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +   
Sbjct: 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVLAQ 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P       +    A+     V  S ++       +     
Sbjct: 407 IDYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAELALENVLQSLNYKYRLNEGDG---- 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+L  + +     ++    F    K+      
Sbjct: 462 ----------------AFYGPKIDFHIKDALNRSHQCGTVQLD----FQMPEKF----DL 497

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  K   V +    +G++    A++     G   +W   VAP ++ +I +   + 
Sbjct: 498 NYIDENNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPLW---VAPVQVKVIPVS--NA 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++
Sbjct: 553 VHVQYANEVADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L+  +        N +
Sbjct: 613 KYGEEKSEVIELDAFVESMKEEIKNRK 639


>gi|240949517|ref|ZP_04753857.1| threonyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240296090|gb|EER46751.1| threonyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 643

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G + +Y   M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++  + P            A+ G      +          E   +   I 
Sbjct: 408 YSTFGFENIAVKLSTRPENRIGDDAMWDRAEEGLANALRNNGLEYEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G +      ++LP  + A++
Sbjct: 468 FAL---------------------------RDCLDREWQCGTV---QLDFALPGRLDASY 497

Query: 303 KGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D G+   V +    +G++     +I   + G    W   +AP +  ++NI       
Sbjct: 498 VAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPVQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R
Sbjct: 552 AEYVQKVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                    +EE +     +    
Sbjct: 612 KGADLGTYKVEEFVEILKSQVRGR 635


>gi|90417311|ref|ZP_01225237.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90330896|gb|EAS46159.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 642

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 156/443 (35%), Gaps = 55/443 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K ++  L     +AE   H+ +   L    + + + G   W P G      +   +R
Sbjct: 226 KELKAYINRL----AEAEKRDHRKINKKLDLYHMQEEAPGSIFWHPKGWSVYSAIEEYMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +Q   G  E+  P +    LW +SG  D +G +M  L   +D+     P +      +F
Sbjct: 282 NKQREQGYQEIKTPQIVDMSLWEKSGHADKFGDDMFSLQT-DDRNYAVKPMNCPCHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   ++ 
Sbjct: 341 NQGLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRSFTQDDAHIF-CTEEQIQPEVSQF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   I  R  + P     S E    A+    Q   +K      +P E  
Sbjct: 400 IDFLHEVYADFGFDEIIYRLSTRPPERVGSDEDWDRAEEALGQALDAKSLPWQELPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
            +   I  +                                     +G ++  GT    +
Sbjct: 460 FYGPKIEFSLKDC---------------------------------IGRVWQLGTIQVDF 486

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           S+P  + A +   DG +   V +    +G+      ++   ++G    W   +AP +  +
Sbjct: 487 SMPGRLDAQYVAEDGARKVPVMLHRAILGSFERFIGILIEQYEGAFPFW---LAPEQAVV 543

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            NI        +  +++   L   G  V  D   E+IG +     +   P  ++VG    
Sbjct: 544 ANIT---DAQAEYAQEVAKSLQNKGFRVNCDLRNEKIGFKIRGHSMQRVPFILVVGDNEK 600

Query: 412 SDSKVEIKHRLTGIREDMSLEEV 434
               V ++ R       + LE+V
Sbjct: 601 ESRTVAVRTRDGKDLGSLPLEQV 623


>gi|170726837|ref|YP_001760863.1| threonyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|238688661|sp|B1KG61|SYT_SHEWM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169812184|gb|ACA86768.1| threonyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 642

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 154/447 (34%), Gaps = 45/447 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IR++
Sbjct: 227 KALKVHLNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y + M      N +     P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTNSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHVF-CTEDQVQQEVSACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G K I ++  + P       +    A+    Q   + D     +P E   +
Sbjct: 403 MVYDTYETFGFKDIVVKLSTRPEKRIGDDDMWDRAEEALKQALTANDIAYEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   +AP +  ++NI  
Sbjct: 493 LGATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTW---LAPMQAVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++   L + G     D   E+IG +     L   P  ++VG + + + +V
Sbjct: 550 KQS---DYVDEVVNILKENGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       + + E  +    + S
Sbjct: 607 AVRTRDGVDLGKIQISEFASKIKEQIS 633


>gi|34496803|ref|NP_901018.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|73919781|sp|Q7NYC6|SYT_CHRVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34102658|gb|AAQ59023.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 633

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 159/440 (36%), Gaps = 44/440 (10%)

Query: 7   FLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ +   L    +   + G+  W P G +   NV   +R + N 
Sbjct: 231 YLYMLEE----AEKRDHRKLGVQLDLFHLQDEAPGMVFWHPKGWQLWQNVEQYMRAKLNH 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +  A+LW  SG   +Y + M  + +   +     P +      IF S ++
Sbjct: 287 EGYKEVRTPMMMDANLWERSGHAANYRENMF-ITESEKRDYAVKPMNCPGHVQIFNSGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  D + F  T +             +
Sbjct: 346 SYRDLPLRYAEFGSCHRNEPSGALHGIMRVRGFVQDDGHIF-CTEDQINQEAKDFHRLVM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ R G   + ++    P            A+ G  +   +       +P E   +   
Sbjct: 405 EVYDRFGFDKVAIKLALRPEKRIGEESTWDKAEEGMREALRACGVEWEELPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                       + D+L  + +     ++         +Y        
Sbjct: 465 IEY--------------------HIKDALGRSWQCGTLQLDFMLPERLDAEY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + +   V +    +G++     ++  +H G   +W   +AP ++ ++NI    +   
Sbjct: 498 ADDNSRKRPVMLHRAALGSLERFLGILIENHAGAFPLW---LAPVQMVVMNIT---EAQA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I   L K G  V  D   E+IG +     L   P Q+IVG K  +D  V ++ R 
Sbjct: 552 EYAAEIAKELEKQGFRVELDLRNEKIGYKIREHSLQKLPYQIIVGDKEKADGLVAVRARG 611

Query: 423 TGIREDMSLEEVINYASHRF 442
                 ++LE          
Sbjct: 612 E-DLGQLTLEAFAARLKAEM 630


>gi|319778289|ref|YP_004129202.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317108313|gb|ADU91059.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 646

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 149/446 (33%), Gaps = 39/446 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      +L L        + G+  W P G      V   +R+     
Sbjct: 235 KYLTMLEEAEKRDHRKLGKELDLF--HFQDEAPGLIFWHPKGWTIWQQVEQFMRKVYVEN 292

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW ++G +D+Y + M      N +     P +      I+ S + S
Sbjct: 293 GYQEIKAPQILDLGLWKKTGHWDNYKENMFTTQSEN-REYGLKPMNCPGHVQIYNSTLHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + +     R+E      G+MR R F   D + F  T +              +
Sbjct: 352 YRELPIRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEDQLLAECLAFTALLQK 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   +  +  + P     + E    A+    +            P E   +   I
Sbjct: 411 VYKEFGFTEVLYKIATRPEKRIGADEIWDKAEKALMESLKQSGCEFEISPGEGAFYGPKI 470

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                                  L D++  + +     ++       G +Y         
Sbjct: 471 EY--------------------TLKDAIGRHWQCGTIQVDFSMPARLGAEYVDA------ 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             D +   V +    +G++     ++  ++ G     P  ++P  + +  I    +   D
Sbjct: 505 -DDTRKTPVMLHRAILGSLERFIGMLIENYSGAM---PPWLSPEHVVVCPI---SEAFND 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L++    V  D   E+I  +     +   P  ++VG K  S S V ++ R  
Sbjct: 558 YALEVQTKLNQK-FRVKVDLRNEKITKKIRENSMQKIPYILVVGEKERSSSSVAVRARGN 616

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
                +++++ I    +   N   V+
Sbjct: 617 IDLGVLTVDDFIARLQNEIDNKLDVV 642


>gi|20071917|gb|AAH27073.1| Pars2 protein [Mus musculus]
          Length = 397

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 137/418 (32%), Positives = 212/418 (50%), Gaps = 35/418 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I   S G Y  +P   +A++ +  +I +E    G  ++++P+L  A+LW  + R+D  G
Sbjct: 1   LILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGV 149
           +E+LRL DR+ K    GPTHEE +T +  S  K SY+ LP   YQ+  KFRDE RPRFG+
Sbjct: 61  RELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGL 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R REF MKD Y+FD + E ++ +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHE
Sbjct: 121 LRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHE 180

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F +  D GE ++                          +V       A T  +   +   
Sbjct: 181 FQLPVDIGEDRL--------------------------VVCPSCHFSANTEILDLSQKIC 214

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +      +GIEVGH FY  TKYS   +A F  A G+    +MG YG+G  R++AA I
Sbjct: 215 PDCQGPLTETKGIEVGHTFYLSTKYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAI 274

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKV----GCDVFWDD 383
           E       I WP  +AP+++ +I  K    +    +  EK+Y  + +       +V  DD
Sbjct: 275 EVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVEKLYDDIMEAVPQLRGEVLLDD 334

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYAS 439
                IG++   A+ LG+P  +I G + + D    E+  + TG    ++ E V+   +
Sbjct: 335 RTHLTIGNRLKDANKLGYPFVIIAGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 392


>gi|291531005|emb|CBK96590.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           siraeum 70/3]
          Length = 639

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 101/451 (22%), Positives = 165/451 (36%), Gaps = 48/451 (10%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L T M      G   +LP G    + +    R
Sbjct: 225 KASELEAYLNMIEEAKKRDHRKLGKELELFTIM--DEGPGFPFFLPKGMTLKNTLIDYWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   R G +E+S P + +  LW  SG +D Y + M      +       P +      ++
Sbjct: 283 QIHTRDGYVEISTPIMLNRQLWETSGHWDHYKENMYT-TVIDGTEFAIKPMNCPGGILVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S  +SYR+LP    ++ L  R E      G+MR R F   DA+ F +TP+        +
Sbjct: 342 KSKPRSYRDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIF-MTPDQITDEIKGV 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P     S E   +A  G  +   S             
Sbjct: 401 VRLIDEVYKLFGFKY-HVELSTQPEDSMGSQEDWDMATEGLRKALDS------------- 446

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               +     + E   A Y    D H E              R  + G I      + LP
Sbjct: 447 ----LGLPYVVNEGDGAFYGPKIDFHLEDSLG----------RTWQCGTI---QLDFQLP 489

Query: 298 M--SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           M     + GADG+ H  + +     G++     ++     G   IW   +AP ++ L+ I
Sbjct: 490 MRFELEYTGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   K+ A L K G  V  D   E+IG +   A L   P  +++G K V   
Sbjct: 547 A---DRHNEFTSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETE 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V I+ R  G    MS+ +  +         
Sbjct: 604 NVSIRCRKRGDIGTMSVSDFCDMVEKEIREK 634


>gi|331269136|ref|YP_004395628.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329125686|gb|AEB75631.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 637

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 154/445 (34%), Gaps = 42/445 (9%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L    + +   G   + P G    + +    RE   + G 
Sbjct: 232 LHMLEEAKKRDHRKLGKELGLFD--LKEEGPGFPFFYPKGMILRNTLENYWREMHEKAGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y + M      + +     P +      +++S + SYR
Sbjct: 290 GEIRTPIILNEKLWHQSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGSILVYKSDLHSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ L  R E      G+MR R F   DA+ F +T E        +       +
Sbjct: 349 ELPIRLGELGLVHRHEYSGALHGLMRVRNFTQDDAHIF-MTKEQITSEILGVIKMIDNFY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P     S E    A  G  +              +   +   I  
Sbjct: 408 GLFGFEYF-VELSTRPEDSMGSDEDWEDATNGLVKALNEAGLEYKINEGDGAFYGPKIDF 466

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                                        +    R  + G I     +       ++ GA
Sbjct: 467 ---------------------------HLRDCLGRTWQCGTI-QLDFQMPERFDLSYVGA 498

Query: 306 DGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H   M      G++     ++   + G    W   +AP ++ ++NI  +     + 
Sbjct: 499 DGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTW---LAPVQVKIMNITDN---QVEY 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C++I   L + G  V  D   E+IG +   A L   P  +++G K ++++ + ++ R  G
Sbjct: 553 CKEIEKTLKENGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNENTIAVRSRKQG 612

Query: 425 IREDMSLEEVINYASHRFSNNRPVL 449
               M L + +             L
Sbjct: 613 DLGAMQLVDFVAMVKKEVQEKTNNL 637


>gi|167758905|ref|ZP_02431032.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
 gi|167663312|gb|EDS07442.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
          Length = 641

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 157/445 (35%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L   M+     G   +LP G    + +    RE   
Sbjct: 227 LEEYLHMMEEAKKRDHRKLGRELGLF--MMCDEGPGFPFFLPKGMVLKNTLLDYWRELHK 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G +E+S P + S  LW  SG +D Y   M      +++     P +      +++S  
Sbjct: 285 ENGYVEVSTPIILSRHLWENSGHWDHYKDNMYTTM-IDEEDYAVKPMNCPGGMLVYKSEP 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    ++ L  R E      G+ R R F   DA+ F +TPE  +     +    
Sbjct: 344 RSYKDLPLRMGELGLVHRHEKSGALHGLFRVRCFTQDDAHIF-MTPEQIRDEIKGVARLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G K   +   + P     S E   +A  G                      DD
Sbjct: 403 DEIYSLFGFKY-HVELSTRPDNSMGSDEDWEMATEGLR-----------------GALDD 444

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E   A Y    D H E              R  + G I     +        
Sbjct: 445 LGLDYMVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTI-QLDMQMPQRFDLE 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I    + 
Sbjct: 494 YTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---SEK 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+  +L + G     D+  E+IG +   A +   P  ++VG+K    + V ++ 
Sbjct: 548 HLEYGKKVLEQLEEAGIRAELDERAEKIGYKIREAQMNKIPYMLVVGAKEEEQNLVSVRS 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G      +   I+         
Sbjct: 608 RFAGDEGQKDIASFIDAIKEEIQAK 632


>gi|260582696|ref|ZP_05850484.1| threonyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260094262|gb|EEW78162.1| threonyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 643

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 156/452 (34%), Gaps = 44/452 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ R        ++EE      ++  +    L
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSRELTL 639


>gi|322514773|ref|ZP_08067797.1| threonine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322119269|gb|EFX91397.1| threonine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 653

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 148/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 238 QLAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 295

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW  +G + +Y   M      N +     P +      IF   
Sbjct: 296 KEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 354

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 355 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 413

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G  +   +          E   + 
Sbjct: 414 VYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYG 473

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 474 PKIEFAL---------------------------RDCLDREWQCGTI---QLDFALPGRL 503

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 504 DASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 558

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV 
Sbjct: 559 -DSQADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVS 617

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE +    ++    
Sbjct: 618 VRTRKGADLGTFTIEEFVEILKNQVKAR 645


>gi|145636075|ref|ZP_01791745.1| threonyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|229844174|ref|ZP_04464315.1| threonyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|145270597|gb|EDK10530.1| threonyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|229813168|gb|EEP48856.1| threonyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 643

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 156/452 (34%), Gaps = 44/452 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ R        ++EE      ++  +    L
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSRELTL 639


>gi|171463692|ref|YP_001797805.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238689063|sp|B1XV14|SYT_POLNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171193230|gb|ACB44191.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 640

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 150/444 (33%), Gaps = 45/444 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + + G+  W P G      V   +R    + G
Sbjct: 231 YLHMLEESEKRDHRRLGKQLDLF--HFQEEAPGLIFWHPKGWSIWQEVEQYMRRVYQQEG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +++Y + M      N +A    P +      I+ S + SY
Sbjct: 289 YQEVKAPQILDRGLWEKSGHWENYKENMFTTESEN-RAYALKPMNCPGHVQIYNSGLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F +     R+E      G+MR R F   D + F  T +  +        +   +
Sbjct: 348 RELPLRFGEFGQCHRNEPSGALHGLMRVRGFTQDDGHIF-CTEDQIQSEVAAFDKAVRAV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P            A+        +       +P E   +   I 
Sbjct: 407 YQDFGFTEVAVKLALRPAKRVGDDAIWDKAEEALRGALKASGQEWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      +S+P  + A +
Sbjct: 467 Y---------------------------HLKDSIGRTWQCGTI---QVDFSMPARLGAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G++     ++  +H G   +W   +AP +  ++NI  +    
Sbjct: 497 VAENNSRKTPVMLHRAIVGSLERFIGILIENHTGNMPVW---LAPTQAVVLNISGNSAA- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++   L K G  +  D   E+I  +     L   P  +IVG K    + V ++ R
Sbjct: 553 --YAQQVQQLLKKQGFRIESDLRNEKITYKIREYALQKTPFLLIVGDKESESNTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M L+  +       S  
Sbjct: 611 GGVDLGVMPLDAFVARLQQDISQK 634


>gi|303253033|ref|ZP_07339186.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247204|ref|ZP_07529254.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648123|gb|EFL78326.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306856262|gb|EFM88415.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 643

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 147/448 (32%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW  +G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P             + G  +   +          E   + 
Sbjct: 404 VYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRTEDGLAKALTANGLSYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLDREWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV 
Sbjct: 549 -DSQADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        +++E +    ++    
Sbjct: 608 VRTRKGADLGTFTIDEFVEILKNQVKAR 635


>gi|257464982|ref|ZP_05629353.1| threonyl-tRNA synthetase [Actinobacillus minor 202]
 gi|257450642|gb|EEV24685.1| threonyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 643

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G + +Y   M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++  + P            A+ G      +          E   +   I 
Sbjct: 408 YSTFGFENIAVKLSTRPENRIGDDAMWDRAEEGLANALRNNGLEYEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G +      ++LP  + A++
Sbjct: 468 FAL---------------------------RDCLDREWQCGTV---QLDFALPGRLDASY 497

Query: 303 KGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D G+   V +    +G++     +I   + G    W   +AP +  ++NI       
Sbjct: 498 VAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPVQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R
Sbjct: 552 AEYVQKVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                    +EE +     +    
Sbjct: 612 KGADLGTYKVEEFVEILKSQVRGR 635


>gi|292670652|ref|ZP_06604078.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647679|gb|EFF65651.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 639

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 156/440 (35%), Gaps = 42/440 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAAKRDHRKLGRELDLFS--LHEEGPGFPFFHPNGMILRNALLEYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M    + + +     P +      ++RS + SY
Sbjct: 291 YQEISTPVILSRKLWETSGHWFHYRENMYT-TEIDGEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+ F +TP+  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAHLF-VTPDQIEGEIQHTINLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E   LA  G      ++         +   +   I 
Sbjct: 409 YRTFGLSY-KAELSTRPEDSMGSDEMWDLATEGLRNALENRGLDYIVNEGDGAFYGPKID 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G I             T+ G
Sbjct: 468 F---------------------------HLRDSIGRTWQCGTI-QLDMSLPEKFDLTYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++  ++ G   +W   +AP ++ ++ I    +    
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILIENYAGAFPVW---MAPVQVRILPIT---ERHTA 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +  R+  +G  V  DD  E+ G +   + +   P  ++VG +      V ++    
Sbjct: 554 YAESLRGRMFDLGIRVEVDDRNEKTGYKIRESQVKKTPYTLVVGDQEQETGAVALRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFS 443
                M+ ++ I     + +
Sbjct: 614 KDSVVMAADDFIALVQEKIA 633


>gi|326201674|ref|ZP_08191545.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988274|gb|EGD49099.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 635

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 153/446 (34%), Gaps = 41/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   RD      +L L    I     G   ++P G    + +    R E 
Sbjct: 227 QLDEYLFRMEEAKKRDHRKLGRELDLFD--ILDEGPGFPFFMPKGMVLRNLLEDFWRSEH 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + + +LW+ SG +D+Y + M  + D +++     P +      +F+  
Sbjct: 285 KKAGYQEIKTPVILNKELWLRSGHWDTYKENMYTV-DIDEQEYAIKPMNCPGGILVFKRK 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP    ++ L  R EL     G+MR R F   DA+ F +TPE        +   
Sbjct: 344 LHSYRDLPQRMGELGLVHRHELSGALHGLMRVRCFTQDDAHIF-MTPEQITDEIVGVINL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               +   G K   +   + P     S E   L+  G  +    K         +   + 
Sbjct: 403 IDDFYKVFGFKY-NVELSTRPENSIGSDEMWELSTQGLRKALDLKGIKYTVNEGDGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I                               +    R  + G I             
Sbjct: 462 PKIDF---------------------------HLEDSIGRTWQCGTI-QLDMNLPERFDL 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ G DG+ H  V +     G++    A++     G    W   ++P ++ ++ +     
Sbjct: 494 SYIGPDGEKHRPVMIHRVVFGSIERFIAILTEHFAGAFPAW---LSPVQVKILPLVDK-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L      V  D   E+IG +   A +   P  +++G K +    V ++
Sbjct: 549 -HHDYAFEVKKLLEAENVRVEVDSRNEKIGYKIREAQMDKTPYMLVIGDKELEGRLVSVR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G    +S E+          N 
Sbjct: 608 SRRDGDLGAISPEQFAEKILDEIKNK 633


>gi|114566616|ref|YP_753770.1| threonyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318333|sp|Q0AY05|SYT_SYNWW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114337551|gb|ABI68399.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 635

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 155/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   ++     G   +LP G    + +    REE  + G
Sbjct: 231 YLQKLEEAKKRDHRRLGRELGLF--VVLDEGPGFPFFLPKGMVLRNELENFWREEHRKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S +LW  SG +D Y   M      ++      P +      +++ ++ SY
Sbjct: 289 YQEIRTPIILSRELWERSGHWDHYKDNMY-FTTIDEGDYAIKPMNCPGGLLVYKQNLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++ L  R E+     G+MR R F   DA+ F L PE        +     R 
Sbjct: 348 KELPLRMGEMGLVHRHEMSGVLHGLMRVRAFTQDDAHIFML-PEQIIDEIKGVMDLVDRF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     +   + P     S E   +A     +    +  M++ +   +  F     
Sbjct: 407 YSLFGFPY-HVELSTKPEKAMGSDEIWEVATNALIKAL-EERGMEYKVNEGDGAF----- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    D H +   D          R  + G I     +       T+ G
Sbjct: 460 -----------YGPKIDFHLQDSLD----------RTWQCGTI-QLDFQMPEKFDLTYVG 497

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG K   V +     G++     ++     G   +W   +AP ++ ++ I    Q   D
Sbjct: 498 EDGGKHRPVMIHRVIYGSIERFIGILTEHFGGAFPLW---LAPVQVRVLPITQRSQ---D 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A L + G  V  D   E+IG +     L   P  +++G +   +  V ++HR  
Sbjct: 552 YARQVVAELEQAGIRVEADFRSEKIGYKIREGQLQKIPYLLVLGDREAEEGTVSVRHRKE 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      LEE          + 
Sbjct: 612 GDLGAKLLEEFKQTIVKEIKDK 633


>gi|145631389|ref|ZP_01787160.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144983048|gb|EDJ90552.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 643

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 154/452 (34%), Gaps = 44/452 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  +INI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVINIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++   LS  G  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQSDYVQQVVKTLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ R        ++EE      ++  +    L
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSRELTL 639


>gi|309973051|gb|ADO96252.1| Threonyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 643

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSR 635


>gi|332981193|ref|YP_004462634.1| Ser-tRNA(Thr) hydrolase [Mahella australiensis 50-1 BON]
 gi|332698871|gb|AEE95812.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Mahella
           australiensis 50-1 BON]
          Length = 637

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 161/448 (35%), Gaps = 41/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L +  +H+   G   + P G    + +    R+E  
Sbjct: 228 LDEYLTRIEEAKQRDHRKLGQELDLFS--LHEEGPGFPFFHPKGMIIRNVLEDFWRKEHR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + + +LW++SG +D Y   M      +D+     P +      +++  +
Sbjct: 286 KHGYEEIKTPIILNKELWIQSGHWDHYKDNMY-FTKIDDQDYAIKPMNCPGSMIMYKRTM 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+ LP    ++ L  R E      G+MR R F   DA+ F L P         +    
Sbjct: 345 HSYKELPIRLCELGLVHRHEKSGVLHGLMRVRCFTQDDAHIFML-PSQVTDEIIGVIDLI 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G K   +   + P     + E   +A     +V   K  +D+ +   +  F  
Sbjct: 404 DYFYSLFGFKY-HVELSTRPEDSMGTDEQWEMATEAL-KVALGKKGLDYKVNEGDGAF-- 459

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                         Y    D H E              R  + G I     +       T
Sbjct: 460 --------------YGPKIDFHLEDSIG----------RTWQCGTI-QLDFQMPERFDLT 494

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D + H  V +     G++    A++   + G    W   +AP ++ ++ I      
Sbjct: 495 YIGEDSEKHRPVMLHRVIFGSIERFIAILTEHYAGALPTW---LAPVQVKILPITDRS-- 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +   L ++      D+  E+IG +   A +   P  +++G K V +  V ++ 
Sbjct: 550 -LEYARSLQMHLEELDIRTELDNRNEKIGYKIRAAQIEKVPYMLVIGDKEVENVAVSVRS 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R  G    MS+++  N       + + +
Sbjct: 609 RSKGDMGSMSVDDFENLIKTEIKSKKAI 636


>gi|145629552|ref|ZP_01785350.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145632888|ref|ZP_01788621.1| threonyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|145639038|ref|ZP_01794646.1| threonyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145641382|ref|ZP_01796961.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144978395|gb|EDJ88159.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|144986544|gb|EDJ93110.1| threonyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|145272010|gb|EDK11919.1| threonyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145273925|gb|EDK13792.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
 gi|309750996|gb|ADO80980.1| Threonyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 643

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSR 635


>gi|239623178|ref|ZP_04666209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522545|gb|EEQ62411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 643

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 150/448 (33%), Gaps = 47/448 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   RD      +L L   M  +   G   +LP G    + +    RE   
Sbjct: 236 LENYLTMMEEAKKRDHRKLGKELGLF--MFAEEGPGFPFFLPKGMTLKNTLIDYWREIHQ 293

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+S P + S  LW  SG +D Y   M      +++     P +      ++++  
Sbjct: 294 REGYQEVSTPIILSRKLWENSGHWDHYKDNMYT-TVIDEEDYAVKPMNCPGGMLVYKNQP 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +  +  +     +    
Sbjct: 353 HSYRDLPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MRDDQIEDEIKGVTRLI 411

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ + G +   +   + P     S E   +A  G  +              +   +  
Sbjct: 412 NEVYTQFGFEYF-VELSTRPEDSMGSDEDWEMATNGLKKALDDMGLEYIVNEGDGAFYGP 470

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
            I                               +    R  + G I   F    ++    
Sbjct: 471 KIDF---------------------------HLRDSLGRTWQCGTIQLDFQMPQRF---- 499

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   + +     G++     ++     GK  +W   +AP ++ +I +   
Sbjct: 500 DLEYTAEDGSKKRPIMIHRVCFGSIERFIGILIEHFAGKFPVW---LAPVQVKVIPV--- 553

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +    +Y +L   G     D   E++G +   A L   P  +++G K  ++  + 
Sbjct: 554 SEKSMEYATGVYEKLKAAGIRTELDHKDEKVGYKIRQAQLEKVPYMLVLGEKEAAEGAIT 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G      LE+ I          
Sbjct: 614 VRSRDKGDLGAAVLEDFIADIKKMVEAK 641


>gi|94264275|ref|ZP_01288069.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|94270245|ref|ZP_01291687.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93450880|gb|EAT01895.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93455320|gb|EAT05527.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
          Length = 641

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 160/447 (35%), Gaps = 39/447 (8%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E  R D      +L L T +  Q   G+  W P G      +    R++
Sbjct: 228 KELKQYLAQLEEAKRRDHRKLGKELELFT-IQEQIGPGLILWQPKGALLRRLIEDYWRQQ 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +   +LW  SG  D YG  M    D  D      P +      ++++
Sbjct: 287 HYQHGYDLLYTPHIARRELWQTSGHLDFYGDNMFAGMDIEDVQYQLKPMNCPFHIALYKT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR  P  + ++   +R E      G+MR R F   DA+ F   PE  +    ++  
Sbjct: 347 RKRSYREFPLRWCELGTVYRFEKTGALHGLMRVRGFTQDDAHIF-CRPEQLEDEIYRILD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +    G     +   + P     S E    A          K       P E   +
Sbjct: 406 FNLHVLKAFGFSDYEIYLSTRPEKYVGSDEHWQQATEALKLALEHKGLAYSVDPGEGVFY 465

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I                    + K+ D L    + S   ++    F    ++     
Sbjct: 466 GPKI--------------------DIKIKDVLGRAWQCSTIQVD----FNLPERF----K 497

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G D G+   + +    +G++     V+   + G   +W   +AP +  ++NI    
Sbjct: 498 LGYTGEDSGEHRPIMIHRALMGSLERFFGVLIEHYAGAFPLW---LAPVQARILNIT--- 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+Y +L + G  V  D+  E++  +   A L   P  ++VG +  +D  + +
Sbjct: 552 DAQLDYVGKVYEQLRRAGVRVEKDERNEKLNYKIREAQLQKIPYMLVVGDQEAADGTITV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M++ +     + + + +
Sbjct: 612 RQRDGKNLPAMTVADFAALVAGQVAES 638


>gi|16273277|ref|NP_439518.1| threonyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260580800|ref|ZP_05848626.1| threonyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174548|sp|P43014|SYT_HAEIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1574199|gb|AAC23014.1| threonyl-tRNA synthetase (thrS) [Haemophilus influenzae Rd KW20]
 gi|260092617|gb|EEW76554.1| threonyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 643

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSR 635


>gi|312134685|ref|YP_004002023.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774736|gb|ADQ04223.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 639

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 164/449 (36%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L    I     G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKKRDHRKLGRELDLFD--IFDEGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + +LW++SG +D Y + M      +D+     P +      ++
Sbjct: 285 EEHKKRGYQEIKTPIMLTKELWIQSGHWDHYKENMY-FTKIDDQEFAIKPMNCPGGILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPQRLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  ++  G K   +   + P     + E   +A++   +                 
Sbjct: 403 IDLIDYFYNVFGFKY-HVELSTRPENSMGTDEQWNMAESALKEALE-------------- 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +I     I E   A Y    D H E              R  +   I     +    
Sbjct: 448 ---EIGISYKINEGDGAFYGPKIDFHLEDSL----------KRTWQCATI-QLDFQMPER 493

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG K   V +     G++    A++     G   +W   +AP ++ +I +  
Sbjct: 494 FDLYYIGEDGAKHRPVMLHRVVFGSIERFIAILTEHFGGAFPVW---LAPTQVRVIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     +   K+   L + G  V  D   E +G +   A L   P  VIVG K   ++ V
Sbjct: 551 N---FNNYAAKVSQILKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKENTV 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +++E ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDEFVSMMKEKVEKK 636


>gi|262374306|ref|ZP_06067582.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262310864|gb|EEY91952.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 640

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           LA+                 P E   +   I 
Sbjct: 407 YKDFGFEEVQMKLSTRPEKRVGDDALWDLAEKSLADALDDAGLAWDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A++
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPIRLDASY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G+      ++   + G     P  +AP +  ++NI       
Sbjct: 497 VTEENERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLAPVQACVMNIT---DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +A E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  I+      +  
Sbjct: 611 SGKNLGTMSVDAFIDLVKSAVAER 634


>gi|260914069|ref|ZP_05920542.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631702|gb|EEX49880.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 644

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 152/446 (34%), Gaps = 44/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLSEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G + +YG  M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G ++I ++  + P     + E                   +           
Sbjct: 404 VYDIYSTFGFENIQVKLSTRPEKRIGADE-----------------MWERAEAGLAAALA 446

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                  I E   A Y    +       D          R  + G I      ++LP  +
Sbjct: 447 HNGLEYEIQEGEGAFYGPKIEFALRDSLD----------REWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 NASYVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +K+   LS  G  V  D   E+IG +     L   P  ++ G K +   KV 
Sbjct: 549 -DSQSEYVQKVVKTLSDAGLRVKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEIEAGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R        ++EE ++    +  
Sbjct: 608 VRTRKGADLGTFTIEEFLDILKKQVR 633


>gi|56475898|ref|YP_157487.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|73919766|sp|Q5P7X5|SYT_AZOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56311941|emb|CAI06586.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 638

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 151/446 (33%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R      I + + G+  W   G      V   +R     
Sbjct: 231 YLHMLEE----AEKRDHRKLGRLLDLFHIQEEAPGMVFWHAKGWTLWQQVEQYMRRTILD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +D Y + M        +     P +      IF   +K
Sbjct: 287 NGYQEVKTPQIVDRSLWEKSGHWDMYSELMFTTQSEK-RDYAVKPMNCPCHIQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    E  +           
Sbjct: 346 SYRDLPLRMAEFGSCHRNEPSGALHGIMRVRNFVQDDAHIFCAD-EQVQTEAAAFIELLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I ++  + P     + +    A+        ++       P E   +   
Sbjct: 405 KVYADFGFTEILIKLSTRPDKRVGTDDQWDAAEAALAAALDAQGLAYDLQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G        ++LP  + A
Sbjct: 465 IEFSL---------------------------KDCLNRVWQCGT---LQLDFNLPVRLGA 494

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D   HY  M     +G++     ++   + G   +W   +AP    ++NI    +
Sbjct: 495 EYVAEDNAKHYPVMLHRAILGSLERFIGILIEHYAGALPLW---LAPVHAVVLNI---SE 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  RL + G  V  D   E+I  +     +   P Q+++G K  +   V ++
Sbjct: 549 GQTDYATEVARRLKQAGFRVEADLRNEKINYKIREHSVHKLPYQIVIGEKEKAAGVVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M L+ +I          
Sbjct: 609 ARGGQDLGQMPLDTLIERWQREIEAR 634


>gi|260551943|ref|ZP_05825805.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260405346|gb|EEW98841.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 640

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGKEVADFIQLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           LA+        +        P E   +   I 
Sbjct: 407 YKDFGFEEVQMKLSTRPEKRVGDDALWDLAEKSLADALDAAGLKWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A++
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPVRLDASY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G+      ++   + G     P  ++P +  ++NI       
Sbjct: 497 VTEENERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPVQACVMNIT---DAQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +A E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  I+      +  
Sbjct: 611 SGKNLGTMSVDAFIDLVKSAVAER 634


>gi|148826837|ref|YP_001291590.1| threonyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166223345|sp|A5UEK1|SYT_HAEIG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148718079|gb|ABQ99206.1| threonyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 643

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSR 635


>gi|58582810|ref|YP_201826.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427404|gb|AAW76441.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 671

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 269 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 326

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 327 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 385

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 386 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 444

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 445 YTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 504

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 505 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 536

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        D
Sbjct: 537 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAD 590

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 591 YVDAVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 650

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 651 EDLGTMTVSAFIERLQAE 668


>gi|52425108|ref|YP_088245.1| threonyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|73919804|sp|Q65TQ0|SYT_MANSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52307160|gb|AAU37660.1| ThrS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 643

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 152/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLNEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G + +YG  M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIRM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G                 E   + 
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEQGLANALAHNGLQYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G +      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLDREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 NASYVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPSW---LAPVQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +K+   LS  G  V  D   E++G +     L   P  ++ G K +S+ KV 
Sbjct: 549 -DSQAEYVQKVTKTLSDAGLRVKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEISEGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        S+EE +    ++  + 
Sbjct: 608 VRTRRGADLGTYSVEEFVEILKNQVRSR 635


>gi|262369846|ref|ZP_06063173.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262314885|gb|EEY95925.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 640

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG   +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIRTPQVVDFTLWEKSGHAANYADGMFT-THSESRNYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGQEVADFIQLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           +A+        +        P E   +   I 
Sbjct: 407 YKDFGFEDVQMKLSTRPEKRVGDDALWDMAEKSLADALDAAGLEWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A++
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +D  V +    +G+      ++   + G     P  + P +  ++NI       
Sbjct: 497 VTEDNDRDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLTPIQACVMNIT---DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +ACE + A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AEACESVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  ++      +  
Sbjct: 611 SGTNLGTMSIDAFVDLVKAAVAER 634


>gi|302411110|ref|XP_003003388.1| prolyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261357293|gb|EEY19721.1| prolyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 474

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 217/455 (47%), Gaps = 34/455 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R +  + P         E  +H  ++R G++ Q   GI+  LP+G +    + ++I +  
Sbjct: 37  RLTAMWTPTGGRTAGGTE-RAHDKLIRAGLLRQSHSGIFHLLPMGYRIQSKLESLIDKYM 95

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA  +++ ++ S  LW +SGRY+  G E+    DR     +  PTHEE +T +    
Sbjct: 96  QSLGASRVALSSITSKKLWQQSGRYEKLGSELFNFQDRRGADYMLAPTHEEEVTSLVAQS 155

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP   YQ   K+RDELRPR G++R+REF MKD Y+FD+    +  +Y ++  +Y
Sbjct: 156 VKSYKELPLRLYQTTRKYRDELRPRHGLLRTREFTMKDLYTFDVDTSAAIQTYEQVQGAY 215

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              F  LGL  +  RA SG +GGDLSHE+   +  GE  +    +         N+D  +
Sbjct: 216 ASFFGSLGLPVVKARAGSGDMGGDLSHEYHFTSPIGEDLIMKCNNCEFAV----NSDIAE 271

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             + +S ++    P      +  ++               +EVGH F+ GT+YS P+ A 
Sbjct: 272 QPANDSAMDAQHCPKCEAGTLEVKE--------------ALEVGHTFHLGTRYSEPLGAR 317

Query: 302 F---KGADGKDH-----------YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                 + G              ++QMG +GIG  R++ AV E   D  G+ WP +++P+
Sbjct: 318 IALPTTSQGDSQSADTSAARASTHIQMGCHGIGVSRLIGAVAEHFADPVGLQWPRAISPY 377

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++ ++     +       + +   LS    DV  DD    +  +   ADL G+P+ V++G
Sbjct: 378 EVEIVFADGLEAQAVQIYDDVVHGLSHTT-DVLLDDRPVSLPWKLKDADLTGYPIVVVLG 436

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +     +E++ R  GI+E +   +++   S   
Sbjct: 437 QVWKKTGNIELQCRRLGIKETVQPSDILQRISELL 471


>gi|229133217|ref|ZP_04262049.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228650236|gb|EEL06239.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 639

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 163/447 (36%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q
Sbjct: 231 KLEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N     E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F++ 
Sbjct: 289 NEYNYQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDHKSFALKPMNCPGHMLMFKNK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +   
Sbjct: 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVLAQ 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P       +    A+     V  S ++       +     
Sbjct: 407 IDYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAELALENVLQSLNYKYRLNEGDG---- 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+L  + +     ++    F    K+      
Sbjct: 462 ----------------AFYGPKIDFHIKDALNRSHQCGTVQLD----FQMPEKF----DL 497

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + 
Sbjct: 498 NYIDENNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NA 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      +I  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++
Sbjct: 553 VHEKYANRIADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L+  +        N +
Sbjct: 613 KYGEEKSEVVELDAFVESMKEEIKNRK 639


>gi|160871539|ref|ZP_02061671.1| threonyl-tRNA synthetase [Rickettsiella grylli]
 gi|159120338|gb|EDP45676.1| threonyl-tRNA synthetase [Rickettsiella grylli]
          Length = 642

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 151/440 (34%), Gaps = 44/440 (10%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L    + + + G+  W P G      +   IR    +   
Sbjct: 232 LYLLKEAEKRDHRKLGKQLDLF--HVQEEAPGMVFWHPRGWTVYQRIEQYIRSCLKKAAY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L +  LW +SG +D + KEM      N       P        IF   IKSYR
Sbjct: 290 QEIQTPQLLARQLWEKSGHWDKFFKEMFTTVTEN-TEFAIKPMSCPGHIQIFNQGIKSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G++R R F+  D + F  T +  +   +        ++
Sbjct: 349 DLPLRLAEFGSCHRNEPSGALHGLLRVRGFVQDDGHIF-CTEDQIQSEVSAFIDLLYNVY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G   + ++  + P     S+     A+        ++  ++                
Sbjct: 408 ADFGFNDVILKLATRPEARVGSNASWDKAEKALALALDARKGLE---------------- 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                 +     A      E         K    R  + G        +S+P  + A + 
Sbjct: 452 ----WTYAHGEGAFYGPKIEFSL------KDSLNRIWQCGT---LQVDFSMPQRLGAEYV 498

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G+ H  V +    +G++     ++   + G   +W   +AP +I ++ I        
Sbjct: 499 NERGERHVPVMLHRAILGSIERFIGILIEHYAGHFPLW---LAPTQIVIMTITDKQHH-- 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I   L  +   V  D   E+I  +     L   P Q+++G + V+  +V ++ + 
Sbjct: 554 -YAKEIAQELEALALRVKLDLRNEKISFKIREHSLQKIPYQLVIGDQEVASKQVTVRRQT 612

Query: 423 TGIREDMSLEEVINYASHRF 442
                 MS+ +         
Sbjct: 613 GDSLGSMSVPKFYKEIRQAI 632


>gi|68250118|ref|YP_249230.1| threonyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81335458|sp|Q4QK77|SYT_HAEI8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|68058317|gb|AAX88570.1| threonyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 643

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 153/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++   LS  G  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQQVVKTLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSR 635


>gi|254362299|ref|ZP_04978411.1| threonine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|153093879|gb|EDN74807.1| threonine--tRNA ligase [Mannheimia haemolytica PHL213]
          Length = 643

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 152/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLQRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIESEVISCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G      +          E   + 
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEKGLANALRNNGLEYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G +      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 AASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQQVVKQLSDAGIRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R         + +++    ++    
Sbjct: 608 VRTRKGADLGTYLVSDLVEILKNQIKAR 635


>gi|258544548|ref|ZP_05704782.1| threonine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258520179|gb|EEV89038.1| threonine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 639

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 150/440 (34%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD      +L      + + + G+  W   G      +   +R +  + G
Sbjct: 232 YLQQQAEAEKRDHRRIGKQLDFF--HLQEEAPGMVFWHAKGWVIYREIENYMRGKLRKYG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D +G  M      ++      P +      IF   ++SY
Sbjct: 290 YEEVQGPQILDRSLWEKSGHWDKFGGNMFTCC-IDEHDYAIKPMNCPGHIQIFNQGLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +  +  R+E      G+MR R F+  D + F  T    +    ++      +
Sbjct: 349 RELPVRYAEFGICHRNEPSGTLHGLMRVRRFVQDDGHIF-CTRSQIREEIERVCQMVYEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +H  G   + +   + P     S E    A+        ++       P E   +   I 
Sbjct: 408 YHDFGFDEVELALSTRPEKRVGSDEIWDEAEADLQAALEAQGKPFRLQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G +      +S+P  + A +
Sbjct: 468 FTL---------------------------KDSLGRRWQCGTV---QLDFSMPERLGAHY 497

Query: 303 KGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D +   V +    +G++     ++   + G+  +W   ++P +  ++ I       
Sbjct: 498 IDENDVRQTPVMIHRAILGSLERFIGILIEQYAGQMPLW---LSPVQAVVMPIT---DAQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  +L+  G  V  D   E+I  +     L   P  ++ G +  + S V ++ R
Sbjct: 552 ADYATAVAEKLATAGLRVEKDLRNEKINYKIREHTLQRVPFMLVAGDREKAASSVSVRQR 611

Query: 422 LTGIREDMSLEEVINYASHR 441
                  MS++++I +    
Sbjct: 612 DGKDLGVMSVDDLITHLQQL 631


>gi|261493242|ref|ZP_05989769.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496515|ref|ZP_05992895.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307718|gb|EEY09041.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311092|gb|EEY12268.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 643

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 151/448 (33%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLQRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P            A+ G      +          E   + 
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEEGLANALRNNGLEYEIQEGEGAFYG 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G +      ++LP  +
Sbjct: 464 PKIEFAL---------------------------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++   D G+   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 EASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQQVVKQLSDAGIRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVS 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R         + +++    ++    
Sbjct: 608 VRTRKGADLGTYLVSDLVEILKNQIKAR 635


>gi|312622904|ref|YP_004024517.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203371|gb|ADQ46698.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 639

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 99/449 (22%), Positives = 165/449 (36%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L    I +   G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKKRDHRKLGRELDLFD--IFEEGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + DLWV+SG +D Y   M      +D+     P +      ++
Sbjct: 285 EEHKKRGYQEIKTPIMLTKDLWVQSGHWDHYKGNMY-FTKIDDQEFAIKPMNCPGSILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPERLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G K   +   + P     + E   +A+T   +    +  +D+ I   + 
Sbjct: 403 IDLIDYFYSVFGFKY-HVELSTRPENSMGTDEQWNMAETALKEAL-EEVGIDYKINEGDG 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F                Y    D H E              R  +   I     +    
Sbjct: 461 AF----------------YGPKIDFHLEDSL----------KRTWQCATI-QLDFQMPER 493

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG K   V +     G++    A++     G   +W   +AP +I +I +  
Sbjct: 494 FDLYYIGEDGAKHRPVMLHRVVFGSIERFIAILTEHFAGAFPVW---LAPTQIRIIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   KI   L + G  V  D   E +G +   A L   P  VIVG K   D+ +
Sbjct: 551 N---FNDYAAKISQILKENGFRVEEDFRSETVGYKIRDAQLQKIPYMVIVGEKEQRDNTI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +++E ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDEFVSMVKDKVEKK 636


>gi|188586439|ref|YP_001917984.1| Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229558041|sp|B2A5P2|SYT_NATTJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|179351126|gb|ACB85396.1| Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 636

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 163/445 (36%), Gaps = 41/445 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L +   H+ + G   +   G   ++ +    R E 
Sbjct: 229 QLEEYIQRLEEAKKREHRKLGKELDLFS--FHEEAPGSPFFHNNGMIVINELIDFWRREH 286

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+S P + +  LW  SG +D + + M    + +D+     P +      ++ ++
Sbjct: 287 RKAGYQEISTPIILNRGLWERSGHWDHFQENMY-FTEIDDEDFAVKPMNCPGAMLVYNNN 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+ P    ++    R EL     G++R+R F   DA+ F L P   +     +   
Sbjct: 346 MYSYRDFPLRVAELGKVHRHELSGALHGLLRARSFTQDDAHIFML-PSQVEEELENVINL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             R +   G     +   + P     S E    A      V   +         +     
Sbjct: 405 VDRFYSVFGFNYY-VELSTKPEKAMGSDEIWDRAINALKSVLEKRGIKYIVNEGDG---- 459

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +L D++  + + S   ++    F    ++      
Sbjct: 460 ----------------AFYGPKIDFQLEDAIGRSWQCSTIQLD----FLLPERF----DL 495

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H  V +     GA+    A++   ++GK  +W   +AP +  +I I     
Sbjct: 496 TYIGEDGQKHRPVMIHRVIYGAIERFFALLIEHYEGKFPLW---LAPRQAVIIPIA---D 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + I  +L   G     D   E+IG +   A L   P  +IVG   V +  V ++
Sbjct: 550 RHMEYGKDITKQLESEGIRADLDQRNEKIGYKIRDAQLKKVPYMLIVGDDEVENKTVSVR 609

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R  G     S+ E+++       +
Sbjct: 610 TREDGDIGSKSVAELVDEIKVEIDD 634


>gi|297569216|ref|YP_003690560.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925131|gb|ADH85941.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 646

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 162/449 (36%), Gaps = 39/449 (8%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +L  L+E   RD      +L L T +  Q   G+  W P G      +    R+E
Sbjct: 228 KELRAYLERLEEAKKRDHRKLGKELELFT-IQDQIGPGLILWQPKGALLRRLIEDYWRDE 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G   +S P +   +LW  SG  D YG+ M    +  +      P +      I+++
Sbjct: 287 HYRHGYELLSTPHIARRELWQTSGHLDFYGENMYSPMEVEEVQYQLKPMNCPFHIAIYKT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR  P  + ++   +R E      G+MR R F   DA+ F   P+  +    ++  
Sbjct: 347 RKRSYREFPLRWCELGTVYRFEKTGALHGLMRVRGFTQDDAHIF-CRPDHLEEEIFRILD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L I    G     +   + P     S E    +          K       P E   +
Sbjct: 406 LNLHILQAFGFADYDIYLSTRPEKYVGSDENWDRSTAALQAALEKKGLSYSLDPGEGVFY 465

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I                    + K+ D L    + S   ++    F    ++     
Sbjct: 466 GPKI--------------------DIKIKDVLGRAWQCSTIQVD----FNLPERF----E 497

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DG++H  + +    +G++     V+   + G   +W   +AP +  + NI    
Sbjct: 498 LGYTGEDGREHRPIMIHRALMGSLERFFGVLIEHYAGAFPLW---LAPVQARICNIT--- 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  E++YA L + G  V  D   E++  +   A L   P  +IVG K  ++  V +
Sbjct: 552 DAQLDYGEEVYAALRRAGVRVEKDLRNEKLNYKIREAQLQKIPYMLIVGDKEAAEGTVTV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRP 447
           + R       M + E     +   + N+ 
Sbjct: 612 RQRDGKNLPPMPVSEFAALVAAEVTVNQE 640


>gi|229846781|ref|ZP_04466888.1| threonyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810270|gb|EEP45989.1| threonyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 643

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 155/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ K+ 
Sbjct: 549 -DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKIA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSR 635


>gi|148825906|ref|YP_001290659.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166223344|sp|A5UBX5|SYT_HAEIE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148716066|gb|ABQ98276.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 643

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 153/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +I ++  + P     S E                               
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDR---------------------AEAGLA 442

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             ++ N +  +      A      E         +    R  + G +      ++LP  +
Sbjct: 443 AALAHNGLEYEIQEGEGAFYGPKIEFAL------RDCLGREWQCGTV---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 DATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++   LS  G  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQSDYVQQVVKTLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 608 VRTRKGADLGTFTVEEFAEILKNQVRSR 635


>gi|255320853|ref|ZP_05362027.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262380254|ref|ZP_06073409.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255302022|gb|EET81265.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298448|gb|EEY86362.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 640

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG   +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQIVDFTLWEKSGHAANYADNMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGPEVADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           +A+        +        P E   +   I 
Sbjct: 407 YKDFGFEDVQMKLSTRPEKRVGDDALWDMAEKSLADALDAAGLEWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A+F
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPERLDASF 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D +    V +    +G+      ++   + G     P  +AP +  ++NI       
Sbjct: 497 VTEDNERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLAPVQACVMNIT---DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             ACE++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AQACEQVVAKLKENGIRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++   +      +  
Sbjct: 611 SGKNLGTMSIDAFNDLVKVAVAER 634


>gi|332284530|ref|YP_004416441.1| threonyl-tRNA synthetase [Pusillimonas sp. T7-7]
 gi|330428483|gb|AEC19817.1| threonyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 648

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 143/444 (32%), Gaps = 38/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S Y   + +   RD      +L L        + G+  W P G      V   +R    
Sbjct: 233 QSAYLTMLEEAERRDHRKIGRELDLF--HFQDEAPGLIFWHPKGWTLWQQVEQYMRSVYR 290

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P +    LW ++G +D+Y + M      N +     P +      IF + +
Sbjct: 291 DNGYQEVKAPQILDLSLWKKTGHWDNYAENMFTTESEN-RVYGLKPMNCPGHVQIFNAGL 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  + +     R+E      G+MR R F   D + F  T +  +          
Sbjct: 350 HSYRELPIRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF-CTEDQLQDECADFTALL 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++   G   I  +  + P     S E    A+    +            P E   +  
Sbjct: 409 QKVYADFGFTEILYKVATRPEKRIGSDEVWDKAEQALMESLSRTGCEYEVSPGEGAFYGP 468

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                       L D++  + +     ++       G +Y       
Sbjct: 469 KIEY--------------------TLKDAIGRHWQCGTIQVDFSMPQRLGAEYVDA---- 504

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D +   V +    +G+      ++  +H G   +W   +AP    +  I    +  
Sbjct: 505 ---TDQRRTPVMLHRAILGSFERFIGMLIENHAGAMPVW---LAPEHAVVCCI---SESS 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L K G   F D  GE+I  +     +   P  ++VG K     +V ++ R
Sbjct: 556 ADYAAEVALGLKKQGFRAFSDLRGEKITRKIREHSMQKIPYILVVGEKERESGQVAVRGR 615

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MSL +         +  
Sbjct: 616 GGVDLGVMSLNDFTVRLQQEIATR 639


>gi|288940715|ref|YP_003442955.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896087|gb|ADC61923.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 639

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L        + G+  W   G+         +RE+ +  G
Sbjct: 234 YLHRLEEAEKRDHRKLGKQLDLF--HFQDEAPGMAFWHAKGRVVYRLAETYMREKLDEYG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D +   M      +D+     P +      ++   +KSY
Sbjct: 292 YQEVETPQVLDRSLWERSGHWDKFAGGMFT-THLDDRDFAIKPMNCPGHIQLYNQGLKSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G+MR+R F   DA+ F  T +  +     +       
Sbjct: 351 RDLPLRLAEFGVVHRNEPSGTLHGLMRARRFTQDDAHVF-CTEDQLQSEVATLIDMVFET 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I +     P     + E    A+    Q    K       P E   +   I 
Sbjct: 410 YRDFGFDAIDLALSLRPEQRVGADELWDKAEAALAQSLDDKGLTYRIQPGEGAFYGPKIE 469

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G I      +S+P  + A +
Sbjct: 470 FTL---------------------------HDSIGRAWQCGTI---QVDFSMPGRLGAHY 499

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  K   V +    +G++     ++   + G   +W   +AP +   +NI       
Sbjct: 500 IAEDNSKQTPVMIHRAVLGSVERFIGILIEHYAGLLPVW---LAPVQAVALNIT---DRQ 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++   L   G    +D   E+IG +     L   P  ++VG + V    + ++ R
Sbjct: 554 ADYVKEVVKTLRDKGFRAEFDLRNEKIGFKIREHTLQRVPYLLVVGDREVETRSLSVRDR 613

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                   SL+  I   S   +N 
Sbjct: 614 QGQDLGSFSLDAFIERLSQDVANR 637


>gi|291242165|ref|XP_002740982.1| PREDICTED: prolyl-tRNA synthetase (mitochondrial)(putative)-like
           [Saccoglossus kowalevskii]
          Length = 443

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 46/415 (11%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S +LM+  G+I Q S G+Y  LPL  ++L+ +  +I EE +  G  ++S+P + +++LW
Sbjct: 47  KSQRLMMEHGLIRQSSPGVYHLLPLALRSLEKLIRLIDEEMHSIGGTKISMPCMTTSELW 106

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKF 139
             + R+++ G E+ ++ DR+      GPTHEE +TD+  S  + S++ LP   YQI  KF
Sbjct: 107 KATNRWETNGPELFKVEDRHGIQYCLGPTHEEAVTDLIASQGRLSHKQLPLRIYQITRKF 166

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPRFG++R REF MKD Y+FD   E +  +Y  +  +Y               A++
Sbjct: 167 RDEKRPRFGLLRGREFYMKDMYTFDANTENAIKTYEAVNQAY-------------FSADT 213

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG +SHE+ + ADTGE +++             N +  DI   +      T      
Sbjct: 214 GSIGGSMSHEYHLPADTGEDELWFCNRCGF----GANKELGDIDIEHCSHCGTT------ 263

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                         N   S +GIEVGH FY GTKYS   +A +  ++ +    +MG YG+
Sbjct: 264 --------------NSLESRQGIEVGHAFYLGTKYSKVFNADYSDSNNQTRTTEMGCYGL 309

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD------ACEKIYARLS 373
           G  R++AA IE S     I WP  +AP++I +I  K   +            ++I + L 
Sbjct: 310 GVTRILAAAIEVSSTDNEIRWPHLLAPYQIYIIPSKDGSKEAGAQPIAVGLYDQIVSHLP 369

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIR 426
            +  ++  DD     IG +   A  LG+P  +++G K +  +   E+ +  TG  
Sbjct: 370 HLKHEIILDDRNHMTIGKRMKEAKSLGYPFVIVIGKKALQPEPLFELCNVNTGET 424


>gi|124025364|ref|YP_001014480.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166225477|sp|A2C155|SYT_PROM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123960432|gb|ABM75215.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 640

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 159/434 (36%), Gaps = 44/434 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      KL L      + + G+  W P G      +   IRE  ++ 
Sbjct: 230 EYINRIEEAEKRDHRKLGKKLSLF--HFQEEAPGMIFWHPNGWTIYRVLQDFIRETISKY 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P +    LW +SG +D + ++M      N +     P +      +F   +KS
Sbjct: 288 DYQELKSPQIVCRSLWEKSGHWDKFKEDMFTTTSENKEY-AIKPMNCPCHVQVFNQGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F+  D + F  T E  +            
Sbjct: 347 YRDLPIRLSEFGSCHRNEPSGALHGLMRVRNFVQDDGHIF-CTNEQIQEEVQSFIDLVFE 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G  SI ++  + P     S +    ++   +    SK      +P E   +   I
Sbjct: 406 VYKAFGFNSILIKLSTRPEKRVGSDDVWDKSEKALSDALDSKGLDWSLLPGEGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
             +                            K    R  + G I      +S+P  ++++
Sbjct: 466 EFSL---------------------------KDCLNRVWQCGTI---QVDFSMPERLNSS 495

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DGK     M     +G+      ++  ++ G   IW   + P +I ++ I   +  
Sbjct: 496 YIDVDGKKQPPVMLHRAILGSFERFIGILIENYSGNLPIW---LCPLQIVVMGITDRN-- 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             DAC    ++L K G     D   E++G +     +   P  +I+G K   ++++ ++ 
Sbjct: 551 -NDACLDTKSKLIKYGFRASVDTRNEKVGFKIREHTMQRIPFLIIIGDKEEENNEISVRT 609

Query: 421 RLTGIREDMSLEEV 434
           R       M+L++ 
Sbjct: 610 REGKDLGKMTLDKF 623


>gi|21243325|ref|NP_642907.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|25453288|sp|Q8PJE1|SYT_XANAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21108867|gb|AAM37443.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 634

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 143/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L P   +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCLEP-QIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 408 YTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|260901781|ref|ZP_05910176.1| threonine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|308108104|gb|EFO45644.1| threonine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
          Length = 386

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 143/419 (34%), Gaps = 42/419 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +R++ N     E+  P +    LW  SG +D Y  
Sbjct: 1   MQQEAPGMVFWHHNGWSIFRDLEVFVRDKLNEYDYQEVKGPLMMDRVLWERSGHWDKYAD 60

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 61  AMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T    +             +   G  +I ++  + P     S E 
Sbjct: 120 RVRGFTQDDAHIF-CTESQIQEEVTSCIKMVYDTYQTFGFDNIVVKLSTRPEKRVGSDEI 178

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              ++    Q   S +        E   +   I                           
Sbjct: 179 WDQSEEALKQSLESMEIPYEIQEGEGAFYGPKIEFTLYDC-------------------- 218

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKD-HYVQMGSYGIGAMRVVAA 327
                    R  + G +      ++LP  + AT+ G + +    V +    +G++     
Sbjct: 219 -------LDRAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLERFIG 268

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    W   +AP +  L+NI           ++I  +L K G     D   E+
Sbjct: 269 ILIEEYAGFFPTW---LAPEQAVLMNITDKQSG---YVQEIVQKLQKSGIRAKADLRNEK 322

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           IG +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+ +
Sbjct: 323 IGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISSRK 381


>gi|188577599|ref|YP_001914528.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522051|gb|ACD59996.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 649

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 247 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 304

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 305 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 363

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 364 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 422

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 423 YTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 482

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 483 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 514

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        D
Sbjct: 515 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAD 568

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 569 YVDAVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 628

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 629 EDLGTMTVSAFIERLQAE 646


>gi|118602649|ref|YP_903864.1| threonyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166225495|sp|A1AWT6|SYT_RUTMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118567588|gb|ABL02393.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 632

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + + + RD         L    I + + G+  W   G      +   +R    
Sbjct: 228 LEEHLHRLEEASRRDHRKIGKIQDLF--HIQEEAPGMIFWHAKGWTLCQLIEQYMRGIFK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P L    LW +SG ++ +G  M   +  N +     P +      I+   +
Sbjct: 286 DNDYQEVHTPQLIDKSLWEKSGHWEKFGDTMFTTSSEN-RDYAVKPMNCPAHIQIYNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F+  D + F  TPE  +   +      
Sbjct: 345 KSYRDLPLRLAEFGSCHRNEPSGTLHGIMRVRNFVQDDGHIF-CTPEQIQVEVSTFIDLT 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   + ++  + P     S E    A+    +   +K         E   +  
Sbjct: 404 FAVYKHFGFDKVDIKLSTRPENHVGSDEVWDKAEAALAEALDAKVIKWEFQKGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                               K    R  + G        +S+P  + 
Sbjct: 464 KIEF---------------------------VLKDCLERQWQCGT---LQVDFSMPERLD 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F   +  K   V +    +G++     ++   ++G    W   + P +  +INI    
Sbjct: 494 AQFIDENNIKQTPVVLHRAILGSLERFVGILIEHYEGAYPCW---LTPIQAVVINISGK- 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D    I  +L K G  V  D   E+IG +     L  +P  +IVG + +   ++ +
Sbjct: 550 --QADFVIDITKKLKKQGLRVISDLRNEKIGFKIREHSLQRYPYILIVGDREMEKDQISV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R       MS+E  +   +   
Sbjct: 608 RQRGGKDLGVMSIEAFVEKINQEI 631


>gi|91787975|ref|YP_548927.1| threonyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123059945|sp|Q12BR3|SYT_POLSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91697200|gb|ABE44029.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas sp.
           JS666]
          Length = 635

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 154/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    I  H+ G+  W P G      V   +R+    
Sbjct: 229 QQYLTMLEEAEKRDHRKLGKELDLF--HIDDHAPGLVFWHPKGWTIWQGVEQYMRKVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y   M        +     P +      IF+  IK
Sbjct: 287 NGYQEVKGPQVIDKTLWEKTGHWDKYRDNMFTTESEK-REYALKPMNCPGHILIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F  T E              
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPSGGLHGIMRVRGFTQDDGHIF-CTEEQILKECVDYTTLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G K+I  +  + P     S E    A+    +   +        P E   +   
Sbjct: 405 KVYTDFGFKNIIYKVATRPDARIGSDESWDKAEQALIESLRASGCEFEISPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G +      +S+P  + A
Sbjct: 465 IEYTL---------------------------KDAIGRQWQCGTM---QVDFSMPERLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG  H  V +    +G++     ++   H G    W   +AP ++S++NI     
Sbjct: 495 EYVGEDGARHRPVMLHRAIVGSLERFIGILIEEHAGALPTW---LAPIQVSVLNIT---D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++   L   G  V  D   E+I  +     L   P  ++VG K  +   V ++
Sbjct: 549 SQAEYAREVAKTLQNQGLRVNLDLRNEKITYKIREHSLQKLPYILVVGDKEKAAGAVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       MS+E      +   +  
Sbjct: 609 ARGNKDLGVMSIEAFAQQIASDIAQK 634


>gi|325263795|ref|ZP_08130528.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324030833|gb|EGB92115.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 641

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 95/446 (21%), Positives = 165/446 (36%), Gaps = 48/446 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   M+     G   +LP G    + +    RE  +R G
Sbjct: 230 YLTMLEEAKKRDHRKLGKELGLF--MMRDEGPGFPFFLPKGMVLKNTLLDYWREIHSRNG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P + S  LW  SG +D Y   M      +++     P +      +++S  +SY
Sbjct: 288 YVEIATPIMLSRHLWETSGHWDHYKDNMYT-TVIDEEDFAIKPMNCPGGILVYQSEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F + PE  +     +      +
Sbjct: 347 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMM-PEQIRDEIKDVARLIDEV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E   +A                         DD+  
Sbjct: 406 YSLFGFKY-HVELSTRPEDSMGSDEDWEMATEALR-----------------GALDDLEL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              + E   A Y    D H E              R  + G I   F    ++       
Sbjct: 448 PYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF----DLE 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I      
Sbjct: 494 YTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---SDK 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +K+   L+K G     D   E+IG +   A +   P  ++VG+K   D  V ++ 
Sbjct: 548 YIKYGKKVQDTLNKAGIRADIDMRAEKIGYKIREAQMQKIPYMLVVGAKEEEDRLVSVRS 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G     S++E I   +   +  +
Sbjct: 608 RFAGDEGQKSMDEFIASITSEIAGKK 633


>gi|121594741|ref|YP_986637.1| threonyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|166223314|sp|A1W8I6|SYT_ACISJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120606821|gb|ABM42561.1| Ser-tRNA(Thr) hydrolase [Acidovorax sp. JS42]
          Length = 639

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 159/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I +HS G   W P G      V   +R   
Sbjct: 229 QEYLHMLEE----AEKRDHRKLGRELDLFHIDEHSPGTVFWHPKGWTLWQEVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y   M        +     P +      IF+  
Sbjct: 285 RDNGYQEVKGPQILDKTLWEKTGHWDKYRDNMFTTESEK-RDYALKPMNCPGHILIFKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  + +     R+E      G+MR R F   D + F  T +            
Sbjct: 344 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIF-CTEDHILAECTAYTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G  +I  +  + P     S E    A+    +   +        P +   + 
Sbjct: 403 LQKVYKDFGFHNIIYKVATRPEARIGSDESWDKAEHALMESLRASGCEFEIAPGDGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G +      +S+P  +
Sbjct: 463 PKIEYTL---------------------------KDAIGRQWQCGTM---QVDFSMPERL 492

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + G DG  H  V +    +G++     ++   H G   +W   +AP +++++NI   
Sbjct: 493 DAEYVGEDGGRHRPVMLHRAIVGSLERFIGILIEEHAGALPVW---LAPVQVAVLNITDA 549

Query: 358 DQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            Q  CR+   K+   L   G  V  D   E+I  +     L   P  ++ G K  +   V
Sbjct: 550 QQDYCREIAAKLQKALPNQGLRVVTDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAV 609

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       MSL+  ++  +   ++ 
Sbjct: 610 AVRARGNKDLGVMSLDAFVDLIAQDIASK 638


>gi|300023294|ref|YP_003755905.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525115|gb|ADJ23584.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 650

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 161/444 (36%), Gaps = 42/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + R        + + G   W   G      + A +R +Q
Sbjct: 232 KAYLHQLEE----AEKRDHRKLGREMDLFHFQEEAPGSVFWHAKGWTLFQTLIAYMRRQQ 287

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G  E++ P +     W  SG +++YG+ M      +++     P +      I+++ 
Sbjct: 288 QRAGYEEVNSPDMMEKHFWELSGHWENYGENMFTTVLPDERVFCCKPMNCPGHVQIYKNG 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP+   +     R E      G++R R F   DA+ F LT +       K+   
Sbjct: 348 LKSYRDLPYRIAEFGKVHRYEPSGALHGMLRVRHFTQDDAHIF-LTEDQIMEECLKINDL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L I+   G + I ++  + P     + E    A+     V                D  
Sbjct: 407 MLSIYKDFGFEEIVIKLSTRPEKRVGADELWDKAEKALGDVL---------------DEV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
              S   I  +      A      E +       K    R  + G        ++L   +
Sbjct: 452 KRRSNGLIKTEIQPGEGAFYGPKLEYVL------KDAIGRDWQCGTT---QVDFNLAGRL 502

Query: 299 SATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +     +     M      G++     ++  +  G   +W   +AP +I +  I + 
Sbjct: 503 GAFYIDEHSEKKTPVMVHRAMFGSLERFTGILIENFAGHFPLW---LAPLQIVVAPIVSD 559

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  +   +G  V  D   E+I  +     L   P+ ++VG +   + KV 
Sbjct: 560 ---ANDYANEVAQKAKALGLRVETDLRNEKINYKVREHSLAKVPVLLVVGKREAEERKVS 616

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++   +  +  MSL++ +   +  
Sbjct: 617 VRRLGSQDQTVMSLDDALKSLAAE 640


>gi|50913800|ref|YP_059772.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|68052904|sp|Q5XDC4|SYT_STRP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50902874|gb|AAT86589.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 647

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 404 IIDVYADFNLTDYRFRLSYR--------------DPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRTSQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+EE +       +  +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|322377382|ref|ZP_08051873.1| threonine--tRNA ligase [Streptococcus sp. M334]
 gi|321281582|gb|EFX58591.1| threonine--tRNA ligase [Streptococcus sp. M334]
          Length = 647

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  + + +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPEDKEKYFDNDQMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S+++ +       +N 
Sbjct: 617 RYGQKETQTVSVDDFVQAILADIANK 642


>gi|322385772|ref|ZP_08059416.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321270510|gb|EFX53426.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 649

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 177/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++E +       +N 
Sbjct: 617 RYGQKETQTVSVDEFVEAILADIANK 642


>gi|21231898|ref|NP_637815.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767974|ref|YP_242736.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991100|ref|YP_001903110.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|25453287|sp|Q8P7Z2|SYT_XANCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81306049|sp|Q4UW57|SYT_XANC8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229558465|sp|B0RRG9|SYT_XANCB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21113622|gb|AAM41739.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573306|gb|AAY48716.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732860|emb|CAP51054.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 636

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 142/437 (32%), Gaps = 38/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 234 YILRMEEADKRDHRKIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 292 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 351 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIEAEVTAFHQQALAV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 410 YTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 469

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G +Y    S     
Sbjct: 470 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDEHSQ---- 505

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              K H V +    +G+M     ++   H G    W   +AP ++ + NI        + 
Sbjct: 506 ---KKHPVMLHRAIVGSMERFIGILIEHHAGAFPAW---LAPVQVVVANIT---DAQAEY 556

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R   
Sbjct: 557 VDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSGE 616

Query: 425 IREDMSLEEVINYASHR 441
               M++   I      
Sbjct: 617 DLGTMTVSAFIERLQAE 633


>gi|169797157|ref|YP_001714950.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|184156915|ref|YP_001845254.1| threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|215484620|ref|YP_002326855.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|239500701|ref|ZP_04660011.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|301510743|ref|ZP_07235980.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|332856896|ref|ZP_08436305.1| threonine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332867201|ref|ZP_08437466.1| threonine--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|332874008|ref|ZP_08441943.1| threonine--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|226701398|sp|B7H005|SYT_ACIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238685492|sp|A3M299|SYT_ACIBT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688031|sp|B0V5P2|SYT_ACIBY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690968|sp|B2HTH0|SYT_ACIBC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169150084|emb|CAM87978.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|183208509|gb|ACC55907.1| Threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|193076379|gb|ABO11043.2| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|213985706|gb|ACJ56005.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|322506811|gb|ADX02265.1| thrS [Acinetobacter baumannii 1656-2]
 gi|323516680|gb|ADX91061.1| threonyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332726950|gb|EGJ58455.1| threonine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332734140|gb|EGJ65272.1| threonine--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|332737749|gb|EGJ68641.1| threonine--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 640

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           LA+        +        P E   +   I 
Sbjct: 407 YKDFGFEEVQMKLSTRPEKRVGDDALWDLAEKSLADALDAAGLEWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A++
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPVRLDASY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G+      ++   + G     P  ++P +  ++NI       
Sbjct: 497 VTEENERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPVQACVMNIT---DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +A E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  I+      +  
Sbjct: 611 SGKNLGTMSVDAFIDLVKSAVAER 634


>gi|160936998|ref|ZP_02084362.1| hypothetical protein CLOBOL_01887 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440188|gb|EDP17935.1| hypothetical protein CLOBOL_01887 [Clostridium bolteae ATCC
           BAA-613]
          Length = 636

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 149/448 (33%), Gaps = 47/448 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   RD      +L L   M  +   G   +LP G    + +    RE   
Sbjct: 229 LESYLTMMEEAKKRDHRKLGKELGLF--MFAEEGPGFPFFLPKGMTLKNTLIDYWREIHY 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+S P + S  LW  SG +D Y   M      +++     P +      ++++  
Sbjct: 287 RDGYQEVSTPIILSRKLWENSGHWDHYKDNMYT-TVIDEEDYAVKPMNCPGGMLVYKNQP 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +  +  +     +    
Sbjct: 346 HSYRDLPLKVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MRDDQIEDQIKGVTKLI 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ + G +   +   + P     S E   +A  G  +              +   +  
Sbjct: 405 NEVYTQFGFEYF-VELSTRPEDSMGSDEDWEMATNGLRKALEDMGLDYIVNEGDGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
            I                               +    R  + G I   F    ++    
Sbjct: 464 KIDF---------------------------HLRDSLGRTWQCGTIQLDFQMPQRF---- 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   + +     G++     ++     GK  +W   +AP ++ +I +   
Sbjct: 493 DLEYTAEDGSKKRPIMIHRVCFGSIERFIGILIEHFAGKFPVW---LAPVQVKVIPV--- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +Y +L   G     D   E++G +   A L   P  +++G K  ++  + 
Sbjct: 547 SEKSMDYATGVYEKLKAAGIRTELDHKDEKVGYKIRQAQLEKVPYMLVLGEKEAAEGAIT 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G      L+  I          
Sbjct: 607 VRSRDKGDLGAAGLDAFIEDIKKMIQTK 634


>gi|213156053|ref|YP_002318098.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|301346223|ref|ZP_07226964.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301596041|ref|ZP_07241049.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|226701414|sp|B7I688|SYT_ACIB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213055213|gb|ACJ40115.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
          Length = 640

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYVENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           LA+        +        P E   +   I 
Sbjct: 407 YKDFGFEEVQMKLSTRPEKRVGDDALWDLAEKSLADALDAAGLEWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A++
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPVRLDASY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G+      ++   + G     P  ++P +  ++NI       
Sbjct: 497 VTEENERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPVQACVMNIT---DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +A E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  I+      +  
Sbjct: 611 SGKNLGTMSVDAFIDLVKSAVAER 634


>gi|307702092|ref|ZP_07639099.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307707425|ref|ZP_07643907.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616377|gb|EFN95568.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616579|gb|EFN95769.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 647

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KSYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S+++ +       +N 
Sbjct: 617 RYGQKETQTVSVDDFVQAILADIANK 642


>gi|317471544|ref|ZP_07930893.1| threonyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900979|gb|EFV22944.1| threonyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 539

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 98/447 (21%), Positives = 165/447 (36%), Gaps = 48/447 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      +L L   M+     G   +LP G    + +    RE  N+
Sbjct: 124 KDYLTMMEEAKKRDHRKLGKELGLF--MMRDEGPGFPFFLPNGMVLKNTLLDYWREIHNK 181

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + S  LW  SG +D Y + M      +++     P +      +++S  +
Sbjct: 182 AGYVEISSPIMLSRHLWETSGHWDHYQENMYT-TVIDEEDFAIKPMNCPGGVLVYQSEPR 240

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F + PE  K     +     
Sbjct: 241 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMM-PEQIKDEIKGVAALID 299

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G K   +   + P     S E   +A                   S  +  DD+
Sbjct: 300 QVYSLFGFKY-HVELSTRPEDSMGSDEDWEMA-----------------TDSLRSALDDL 341

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
                + E   A Y    D H E              R  + G I   F    ++     
Sbjct: 342 GLDYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF----D 387

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GADG+ H  + +     G++     ++     G    W   +AP ++ +I I    
Sbjct: 388 LHYTGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVIPI---S 441

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   K+   L   G     D   E++G +   A L   P  ++VG K   +  V +
Sbjct: 442 DKHLEYGTKVLDALKAAGIRAEIDTRAEKMGYKIREAQLHKIPYMLVVGGKEEENQAVSV 501

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G    MSL++ I          
Sbjct: 502 RSRFKGDEGQMSLDDFICAIRKEIETK 528


>gi|260556061|ref|ZP_05828280.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260410116|gb|EEX03415.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 640

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           LA+        +        P E   +   I 
Sbjct: 407 YKDFGFEEVQMKLSTRPEKRVGDDALWDLAEKSLADALDAAGLEWELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A++
Sbjct: 467 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPVRLDASY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G+      ++   + G     P  ++P +  ++NI       
Sbjct: 497 VTEENERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPVQACVMNIT---DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +A E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 551 AEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  I+      +  
Sbjct: 611 SGKNLGTMSVDAFIDLVKSAVAER 634


>gi|157375257|ref|YP_001473857.1| threonyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|189083624|sp|A8FV56|SYT_SHESH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157317631|gb|ABV36729.1| threonyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
          Length = 642

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 154/447 (34%), Gaps = 45/447 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IR++
Sbjct: 227 KALKVHLNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y   M      N +     P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYADAMFTTNSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHVF-CTEDQVQQEVSACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G K I ++  + P       +    ++    Q   +       +P E   +
Sbjct: 403 MVYDTYETFGFKDIVVKLSTRPEKRIGDDDMWDRSEEALKQALTANGIAYEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   +AP ++ ++NI  
Sbjct: 493 LGATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTW---LAPMQVVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++     + G     D   E+IG +     L   P  ++VG + + + +V
Sbjct: 550 KQS---DYVDEVVNIFKESGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMDNKEV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       M +E+  +  + + S
Sbjct: 607 AVRTRDGVDLGKMRIEDFASKINEQIS 633


>gi|138896280|ref|YP_001126733.1| threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|134267793|gb|ABO67988.1| Threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 649

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 173/443 (39%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G
Sbjct: 234 YLQLLEEAKERDHRKLGKELELFT-TSQKVGQGLPLWLPKGATIRRLIERYIVDKEIALG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + SY
Sbjct: 293 YDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL     R                  D  + + +   D M         +  D + 
Sbjct: 412 YKDFGLDEYSFRLSYR--------------DPQDKEKYYDDDEMWEKAQRMLREAMDELG 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+    +     A      + ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 458 LD--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYIG 507

Query: 305 ADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    +   D
Sbjct: 508 EDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVEVIPVS--SEAHLD 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G  V  D+  E+IG +   A +   P  ++VG K  ++  V ++    
Sbjct: 563 YAYEVKQALQVNGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEAAERAVNVRRYGE 622

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              E ++L++ I          R
Sbjct: 623 KESETVALDKFIAMLEEDVRQKR 645


>gi|289668713|ref|ZP_06489788.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 634

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 142/430 (33%), Gaps = 41/430 (9%)

Query: 17  DAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+ + R      + + + G+  W P G      V   +R+    +G  E+  P 
Sbjct: 238 EADKRDHRRIGRAQDLFHLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQ 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG +D+Y   M    +   +     P +      +F   + SYR+LP  + 
Sbjct: 298 ILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYG 356

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G++R R F   D + F L     +          L ++   G   
Sbjct: 357 EFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAVYTAFGFDD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++    P            A+                +P E   +   I         
Sbjct: 416 IQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIEY------- 468

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHY 311
                         L D++    ++    ++       G        A +   +  K H 
Sbjct: 469 -------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVDENSQKKHP 507

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+M     ++   H G    W   +AP ++ ++NI        +  + +   
Sbjct: 508 VMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVVNIT---DAQAEYVDSVRKT 561

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R       M++
Sbjct: 562 LANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSGEDLGTMTV 621

Query: 432 EEVINYASHR 441
              +      
Sbjct: 622 SAFVERLQAE 631


>gi|84624684|ref|YP_452056.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|73919845|sp|Q5GXY0|SYT_XANOR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123725509|sp|Q2P0Z5|SYT_XANOM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84368624|dbj|BAE69782.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 408 YTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        D
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDAVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|229173066|ref|ZP_04300617.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228610399|gb|EEK67670.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 639

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 161/443 (36%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q    
Sbjct: 235 YLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYK 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW +SG +  Y   M   ++ ++K+    P +      +F++ + SY
Sbjct: 293 YQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKLHSY 351

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G++R R F   DA+ F +TPE  +     +      +
Sbjct: 352 RELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQIDYV 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P       +    A+     V  S ++       +         
Sbjct: 411 YKTFGFEY-EVELSTRPEDSMGDDKLWEQAEEALENVLHSLNYKYRLNEGDG-------- 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  + D+L  + +     ++    F    K+       +  
Sbjct: 462 ------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLNYID 501

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   V +    +G++    A++     G    W   VAP ++ +I +   + V   
Sbjct: 502 EKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAVHVQ 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++    
Sbjct: 557 YADEIADKLAQAGIRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGSVNVRKYGE 616

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              E + L   +        N +
Sbjct: 617 DQSEVIELNGFVESIKEEIKNKK 639


>gi|331085681|ref|ZP_08334764.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406604|gb|EGG86109.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 643

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 91/448 (20%), Positives = 157/448 (35%), Gaps = 47/448 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T  I +   G   +LP G    + +    RE   
Sbjct: 227 LDEYLAKIEEAKKRDHRKLGKELGLFT--ILEEGPGFPIFLPKGMILKNTLIDYWREVHT 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G +E+S P + +  LW  SG +  Y + M      +++     P +      ++++  
Sbjct: 285 RAGYVEISTPIMLNKQLWETSGHWAHYKENMYT-TVIDEEDFAIKPMNCPGGILVYKTEP 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++    R E      G+MR R F   DA+ F +T E  K     +    
Sbjct: 344 HSYRDLPLRMGELGTVHRHEKSGALHGLMRVRSFTQDDAHIF-MTREQIKDEIKGVARLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P     S E   +A                          +
Sbjct: 403 DEVYSLFGFKY-HVELSTKPEDSMGSQEDWDIATDALRSALD-----------------E 444

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
           +     I E   A Y    D H E              R  + G I   F    ++    
Sbjct: 445 LQLPYVINEGDGAFYGPKIDFHLEDTLG----------RTWQCGTIQLDFQLPLRF---- 490

Query: 299 SATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  ADG+ H   M      G++     ++     G    W   +AP ++ ++ I   
Sbjct: 491 EMEYIAADGEKHRPIMVHRVVFGSIERFIGILIEHFAGAFPTW---LAPEQVKVLPI--- 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   ++ A+L +       D+  E+IG +   A L   P  ++VG+K   +  V 
Sbjct: 545 SEKYHEYANEVAAKLKEAKIRCSVDERSEKIGYKIRDARLNKIPYMLVVGAKEQEEGVVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G     SL+  I   +    N 
Sbjct: 605 VRSRFLGDEGQRSLDTFIAEITEEIKNR 632


>gi|289661762|ref|ZP_06483343.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 636

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 142/430 (33%), Gaps = 41/430 (9%)

Query: 17  DAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+ + R      + + + G+  W P G      V   +R+    +G  E+  P 
Sbjct: 240 EADKRDHRRIGRAQDLFHLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQ 299

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG +D+Y   M    +   +     P +      +F   + SYR+LP  + 
Sbjct: 300 ILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYG 358

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G++R R F   D + F L     +          L ++   G   
Sbjct: 359 EFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAVYTAFGFDD 417

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++    P            A+                +P E   +   I         
Sbjct: 418 IQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIEY------- 470

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHY 311
                         L D++    ++    ++       G        A +   +  K H 
Sbjct: 471 -------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVDENSQKKHP 509

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+M     ++   H G    W   +AP ++ ++NI        +  + +   
Sbjct: 510 VMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVVNIT---DAQAEYVDSVRKT 563

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R       M++
Sbjct: 564 LANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSGEDLGTMTV 623

Query: 432 EEVINYASHR 441
              I      
Sbjct: 624 SAFIERLQAE 633


>gi|229011636|ref|ZP_04168819.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228749594|gb|EEL99436.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 639

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 163/447 (36%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q
Sbjct: 231 KLEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N     E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F++ 
Sbjct: 289 NEYNYQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDHKSFALKPMNCPGHMLMFKNK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +   
Sbjct: 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVLAQ 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P       +    A+     V  S ++       +     
Sbjct: 407 IDYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAELALENVLQSLNYKYRLNEGDG---- 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+L  + +     ++    F    K+      
Sbjct: 462 ----------------AFYGPKIDFHIKDALNRSHQCGTVQLD----FQMPEKF----DL 497

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + 
Sbjct: 498 NYIDENNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NA 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      +I  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++
Sbjct: 553 VHEQYINRIADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L+  +        N +
Sbjct: 613 KYGEEKSEVVELDAFVESMKEEIKNRK 639


>gi|71903081|ref|YP_279884.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|123734122|sp|Q48US7|SYT_STRPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71802176|gb|AAX71529.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 647

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 177/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T+ +   D M     S      
Sbjct: 404 IIDVYADFNLTDYRFRLSYR--------------DPNDTRKYYDNDEMWENAQSMLKAAL 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +      S+EE +       +  
Sbjct: 615 RYGSKATHTESVEEFVENILADIARK 640


>gi|289434839|ref|YP_003464711.1| hypothetical protein lse_1474 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171083|emb|CBH27625.1| thrS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 640

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 175/444 (39%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWDKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MGMD--YFEADGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I+      S  
Sbjct: 617 GSKDSETMELDTFISQVVQEVSKY 640


>gi|15674621|ref|NP_268795.1| threonyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71910240|ref|YP_281790.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|22654136|sp|Q9A115|SYT_STRP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13621733|gb|AAK33516.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes M1 GAS]
 gi|71853022|gb|AAZ51045.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 647

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 404 IIDVYADFNLTDYRFRLSYR--------------DPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+EE +       +  +RP
Sbjct: 615 RYGSKTTHTESVEEFVENILADIARKSRP 643


>gi|223932680|ref|ZP_03624679.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223898650|gb|EEF65012.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 650

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 180/450 (40%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYHEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 347 VRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIF-VTPEQIQEEFKKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  + + +   D M            
Sbjct: 406 IIDVYADFNLNDYRFRLSYR--------------DPEDKEKYYDNDEMWENAQRMLKGAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I    +
Sbjct: 502 TYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPTQVTMIPISV--E 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K + D+ V ++
Sbjct: 557 AHLDYAWKVAKELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +   +  S+ E +++     +  +RP 
Sbjct: 617 RYGSKATQTQSVSEFVDHILADIARKSRPA 646


>gi|322388243|ref|ZP_08061847.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140915|gb|EFX36416.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 647

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLNEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    +S++E +       +N 
Sbjct: 617 RYGQKETNTVSVDEFVATILADIANK 642


>gi|307709563|ref|ZP_07646017.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619694|gb|EFN98816.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 647

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S+++ +       +N 
Sbjct: 617 RYGQKETQTVSVDDFVQAILADIANK 642


>gi|325661884|ref|ZP_08150505.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471862|gb|EGC75079.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 643

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 91/448 (20%), Positives = 157/448 (35%), Gaps = 47/448 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T  I +   G   +LP G    + +    RE   
Sbjct: 227 LDEYLAKIEEAKKRDHRKLGKELGLFT--ILEEGPGFPIFLPKGMILKNTLIDYWREVHT 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G +E+S P + +  LW  SG +  Y + M      +++     P +      ++++  
Sbjct: 285 RAGYVEISTPIMLNRQLWETSGHWAHYKENMYT-TVIDEEDFAIKPMNCPGGILVYKTEP 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++    R E      G+MR R F   DA+ F +T E  K     +    
Sbjct: 344 HSYRDLPLRMGELGTVHRHEKSGALHGLMRVRSFTQDDAHIF-MTREQIKDEIKGVARLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P     S E   +A                          +
Sbjct: 403 DEVYSLFGFKY-HVELSTKPEDSMGSQEDWDIATDALRSALD-----------------E 444

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
           +     I E   A Y    D H E              R  + G I   F    ++    
Sbjct: 445 LQLPYVINEGDGAFYGPKIDFHLEDTLG----------RTWQCGTIQLDFQLPLRF---- 490

Query: 299 SATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  ADG+ H   M      G++     ++     G    W   +AP ++ ++ I   
Sbjct: 491 EMEYIAADGEKHRPIMVHRVVFGSIERFIGILIEHFAGAFPTW---LAPEQVKVLPI--- 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   ++ A+L +       D+  E+IG +   A L   P  ++VG+K   +  V 
Sbjct: 545 SEKYHEYANEVAAKLKEAKIRCSVDERSEKIGYKIRDARLNKIPYMLVVGAKEQEEGVVS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G     SL+  I   +    N 
Sbjct: 605 VRSRFLGDEGQRSLDTFIAEITEEIKNR 632


>gi|33240514|ref|NP_875456.1| threonyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|73919816|sp|Q7VBM8|SYT_PROMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33238042|gb|AAQ00109.1| Threonyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 643

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 160/450 (35%), Gaps = 47/450 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      KL L      + + G+  W P G      + + IRE      
Sbjct: 231 YLLKIEEAEKRDHRKIGKKLDLF--HTQEEAPGMIFWHPKGWSIYQVLESFIRETLILND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      LW +SG +D + ++M      N +     P +      +F   +KSY
Sbjct: 289 YKEIKTPQTVDRSLWEKSGHWDKFKEDMFTTTSEN-REYAIKPMNCPCHIQVFNEGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T    +   +K       +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGALHGLMRVRNFVQDDAHIF-CTEAQIQDEVSKFIDLVFDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +SI ++  + P     S E    ++         K F    +P E   +   I 
Sbjct: 407 YKAFGFESIIIKLSTRPTKRVGSDEIWDKSEKALADALNIKKFEWSYLPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      +S+P  + A++
Sbjct: 467 FSL---------------------------KDCIDRVWQCGTI---QVDFSMPHRLGASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  K   V +    +G+      ++   ++GK    P  ++P ++ +I I   + + 
Sbjct: 497 IDENSQKKVPVMLHRAILGSFERFIGILIEEYEGKF---PPWLSPIQVIVIGITDRNSI- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              C++I   L   G    +D   E++G +     L   P  +I+G K   +  V ++  
Sbjct: 553 --KCKEISNLLMLRGYRATYDTRNEKVGLKIREHTLQRIPYLLIIGDKEQEEGTVSVRTM 610

Query: 422 LTGIREDMSLEEVINYASHRFS---NNRPV 448
                  M L E     +   S   N +PV
Sbjct: 611 HGIDMGSMKLTEFQEIINEAISLKGNYKPV 640


>gi|306829065|ref|ZP_07462255.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304428151|gb|EFM31241.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 647

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDCGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S+++ +       +N 
Sbjct: 617 RYGQKETQTVSVDDFVQAILADIANK 642


>gi|42781481|ref|NP_978728.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|42737404|gb|AAS41336.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 640

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 165/445 (37%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + +LW +SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYKYQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A++    V  S ++       +      
Sbjct: 408 DYVYKTFGFQY-EVELSTRPEDSMGDDKLWEQAESALANVLHSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDVRDEKLGYKIREAQMQKIPYVLVIGDKELENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 E ++L+  ++       N 
Sbjct: 614 YGGEKSEVVALDVFVSSIEEEIKNR 638


>gi|315612715|ref|ZP_07887626.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314825|gb|EFU62866.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 647

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDCGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S+++ +       +N 
Sbjct: 617 RYGQKETQTVSVDDFVQAILADIANK 642


>gi|19745635|ref|NP_606771.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|94988057|ref|YP_596158.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94991943|ref|YP_600042.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|139474254|ref|YP_001128970.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|306827837|ref|ZP_07461106.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|25453286|sp|Q8P234|SYT_STRP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123080426|sp|Q1JMY5|SYT_STRPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123382336|sp|Q1JD10|SYT_STRPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225506|sp|A2RFY5|SYT_STRPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19747765|gb|AAL97270.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes
           MGAS8232]
 gi|94541565|gb|ABF31614.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94545451|gb|ABF35498.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|134272501|emb|CAM30764.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|304429946|gb|EFM32986.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 647

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 404 IIDVYADFNLTDYRFRLSYR--------------DPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+EE +       +  +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|312128091|ref|YP_003992965.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778110|gb|ADQ07596.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 639

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 166/449 (36%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E  R D      +L L    I +   G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKRRDHRKLGRELDLFD--IFEEGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + DLWV+SG +D Y + M      +D+     P +      ++
Sbjct: 285 EEHKKRGYQEIKTPIMLTKDLWVQSGHWDHYKENMY-FTKIDDQEFAIKPMNCPGSILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPERLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G K   +   + P     + E   +A+T   +    +  +D+ I   + 
Sbjct: 403 IDLIDYFYSVFGFKY-HVELSTRPEISMGTDEQWNMAETALKEAL-EEVGIDYKINEGDG 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F                Y    D H E              R  +   I     +    
Sbjct: 461 AF----------------YGPKIDFHLEDSL----------KRTWQCATI-QLDFQMPER 493

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG K   V +     G++    A++     G   +W   +AP +I +I +  
Sbjct: 494 FDLYYIGEDGAKHRPVMLHRVVFGSIERFIAILTEHFAGAFPVW---LAPTQIRVIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   KI   L + G  V  D   E +G +   A L   P  VIVG K   ++ +
Sbjct: 551 N---FNDYAAKISQTLKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKERRENTI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     ++++ ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDKFVSMVKEKVEKK 636


>gi|222110646|ref|YP_002552910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|254783520|sp|B9MHX8|SYT_DIAST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221730090|gb|ACM32910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 639

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 159/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I +HS G   W P G      V   +R   
Sbjct: 229 QQYLHMLEE----AEKRDHRKLGRELDLFHIDEHSPGTVFWHPKGWTLWQEVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y   M        +     P +      IF+  
Sbjct: 285 RDNGYQEVKGPQILDKTLWEKTGHWDKYRDNMFTTESEK-RDYALKPMNCPGHILIFKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  + +     R+E      G+MR R F   D + F  T +            
Sbjct: 344 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIF-CTEDHILAECTAYTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G  +I  +  + P     S E    A+    +   +        P +   + 
Sbjct: 403 LQKVYKNFGFHNIIYKVATRPEARIGSDESWDKAEHALMESLRASGCEFEIAPGDGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G +      +S+P  +
Sbjct: 463 PKIEYTL---------------------------KDAIGRQWQCGTM---QVDFSMPERL 492

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + G DG  H  V +    +G++     ++   H G   +W   +AP +++++NI   
Sbjct: 493 DAEYVGEDGGRHRPVMLHRAIVGSLERFIGILIEEHAGALPVW---LAPVQVAVLNITDA 549

Query: 358 DQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            Q  CR+   K+   L   G  V  D   E+I  +     L   P  ++ G K  +   V
Sbjct: 550 QQDYCREIAAKLQKALPNQGLRVVTDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAV 609

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       MSL+  ++  +   ++ 
Sbjct: 610 AVRARGNKDLGVMSLDAFVDLIAQDIASK 638


>gi|303233025|ref|ZP_07319704.1| threonine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302480896|gb|EFL43977.1| threonine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 589

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 165/449 (36%), Gaps = 44/449 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +K  L   +    +AE   H+ + +     M+++   G   WLP G +  + +    +E 
Sbjct: 177 TKEELAEYERLIAEAEKRDHRKIGKEMDLFMLNEAGPGFPFWLPNGMRIRNELMKYWQEM 236

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q++ G  ++  P + S  LW  SG +D Y + M      +D+     P +      ++ S
Sbjct: 237 QDQYGYEQIQTPIILSRKLWETSGHWDHYKENMYT-TVIDDEDFAIKPMNCPGACLVYMS 295

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP    +  L  R EL+    G+ R REF   DA+ F + P+       ++  
Sbjct: 296 KPRSYRDLPLKLAEAGLDHRHELKGTLHGLFRVREFTQDDAHLF-IRPDQICDEVREVTE 354

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                + + G     +   + P     S E    A+ G      +          +   +
Sbjct: 355 LISAYYKQFGFPY-KVELSTRPENSMGSDEDWATAEAGLRDALETMGLDYTINEGDGAFY 413

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I                               K    R  + G I     ++    +
Sbjct: 414 GPKIDF---------------------------HLKDCLGRTWQCGTI-QLDFQFPHNFN 445

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +  +DG K   + +   G G+      ++   ++GK  +W   +AP ++ ++ +    
Sbjct: 446 LEYVDSDGQKKRPIMIHRAGFGSFERFIGMLIEQYEGKFPVW---LAPLQVKVLPV---S 499

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVE 417
           +  RD   ++  +L K+   V  DD  E+IG +   A  +   P  +IVG +      + 
Sbjct: 500 EKTRDYARELTQKLLKLKIRVKLDDRDEKIGYKIREARSIDRVPYMLIVGEQEAQAGNIS 559

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R     +  + ++ +     + +  +
Sbjct: 560 VRDRSNTTTQ-YAFDDFVALLQRQIAARK 587


>gi|312113796|ref|YP_004011392.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218925|gb|ADP70293.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 640

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 165/446 (36%), Gaps = 48/446 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + K +L +L+E    AE   H+ + R      + + + G   W P G      + A +R 
Sbjct: 228 QLKSYLTMLEE----AEKRDHRRLGREMDLFHLQEEAPGSVFWHPKGWTVFQALIAFMRR 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            Q+ +G +E++ P +    LW +SG ++ +G+ M      +++     P +      IF+
Sbjct: 284 RQHASGHVEVNSPDMMERKLWEQSGHWEKFGENMFVTETPDERVFCCKPMNCPGHIQIFK 343

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + +KSYR+LP    +     R E      G+MR R F   DA+ F  TPE        + 
Sbjct: 344 NGLKSYRDLPLRIAEFGKVHRYEPSGALHGIMRVRHFTQDDAHIF-CTPEQITEECVHLN 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I+   G + + ++  + P     S E    A+        +        P E   
Sbjct: 403 SLLLSIYRDFGFEDVVIKLSTRPEKRVGSDEVWDKAEAALKAAVEAAGEPYTLNPGEGAF 462

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               +    R  + G I      ++LP 
Sbjct: 463 YGPKLEYTL---------------------------RDAIGREWQCGTI---QLDFNLPV 492

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A + G DG  H  V +     G++     ++  ++ G   +W   ++P +  +  I 
Sbjct: 493 RLGAFYIGEDGAKHTPVMIHRALFGSLERFIGILIENYAGHLPLW---LSPVQTMVATIV 549

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +          ++ A L   G     D   E+I  +     L   P+  +VG +   +  
Sbjct: 550 SD---ADAYAGEVEAALVAAGVRAETDLRNEKINYKVREHSLAKVPVMFVVGKREAEERT 606

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++   +  +E +SL+E I   +  
Sbjct: 607 VSVRRLGSQAQETLSLDEAIARIATE 632


>gi|94989937|ref|YP_598037.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|123258050|sp|Q1JI30|SYT_STRPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94543445|gb|ABF33493.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 647

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 404 IIDVYADFNLTDYRFRLSYR--------------DPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DEMDVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+EE +       +  +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|21909901|ref|NP_664169.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896400|ref|NP_802750.1| threonyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|25453285|sp|Q8K8C0|SYT_STRP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21904088|gb|AAM78972.1| putative threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811651|dbj|BAC64583.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes SSI-1]
          Length = 647

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 404 IIDVYADFNLTDYRFRLSYR--------------DPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + +  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+EE +       +  +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|324326401|gb|ADY21661.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 639

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 162/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S +        +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALANVLHSLNCKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +L++ G  V  D  GE++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEIADKLAQAGVRVERDVRGEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L   +        N +
Sbjct: 614 YGEEKSEVIELNGFVESIKEEIKNKK 639


>gi|78048351|ref|YP_364526.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325927169|ref|ZP_08188432.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
 gi|123743902|sp|Q3BRT7|SYT_XANC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78036781|emb|CAJ24474.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325542482|gb|EGD13961.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
          Length = 634

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 408 YTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|257095791|ref|YP_003169432.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048315|gb|ACV37503.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 641

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 147/443 (33%), Gaps = 40/443 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD      +L L        + G   W P G      +   +R  
Sbjct: 226 KALKAYLTRLEEAGKRDHRKLGAQLDLF--HFDDCAPGSVFWHPKGWALFQQLIGYMRTR 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R   +E++ P +    LW  SG + +Y + M      +++     P +      +F  
Sbjct: 284 QERADYVEVNTPDVMDRGLWETSGHWFNYREAMFTTTTEDERVFALKPMNCPGAVSLFAQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G++R R F   DA+ F  T    +        
Sbjct: 344 RLKSYRDLPLRMAEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTAAQMQDECASTIA 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G   + ++  + P     S E     +   +             P E    
Sbjct: 403 LVFAIYRDFGFDDVAVKLSTRPANRIGSDETWDQLEGALSGALDRMGIECRINPGEG--- 459

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A         L D++  + +     +++               
Sbjct: 460 -----------------AFYGPKLEFVLRDAIGRDWQCGTLQVDLNLPER--------FD 494

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++    G ++  V +     G++     ++   + G   +W   +AP +  ++NI    
Sbjct: 495 ISYINERGERERPVMLHRALFGSLERFTGILIEHYSGLFPLW---LAPQQAVVLNI---S 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  + +   L +VG     D   E+IG +     L   P  ++VG    ++ +V +
Sbjct: 549 EGQSDYAKSVLQALKRVGVRATVDLRNEKIGYKIREYSLQKVPYLLVVGDMEKAEGRVAL 608

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       + L +VI      
Sbjct: 609 RARAGEDLGSLPLADVIARLREE 631


>gi|329115958|ref|ZP_08244675.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906363|gb|EGE53277.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 648

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 178/450 (39%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPMASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPKDTHKYYDNDEMWENAQAMLKAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 AHIDYAWEVAKTLRDRGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +      S+EE ++      +  +RPV
Sbjct: 617 RYGSKATHTESIEEFVDNILADIARKSRPV 646


>gi|169634342|ref|YP_001708078.1| threonyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|238688108|sp|B0VKJ4|SYT_ACIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169153134|emb|CAP02213.1| threonyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 640

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 149/441 (33%), Gaps = 44/441 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       L L    + + + G+  W   G      +   +R+ Q   G  E
Sbjct: 234 RIEEAENRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNGYQE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG   +Y + M        +     P +      +F   +KSYR+L
Sbjct: 292 IKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSYRDL 350

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G+MR R F   DA+ F  T E             L ++  
Sbjct: 351 PIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDVYKD 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + + M+  + P           LA+        +        P E   +   I  + 
Sbjct: 410 FGFEEVQMKLSTRPEKRVGDDALWDLAEKSLADALDAAGLEWELQPGEGAFYGPKIEFSL 469

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                                      K    R  + G I      ++LP  + A++   
Sbjct: 470 ---------------------------KDCLGRVWQCGTI---QCDFNLPVRLDASYVTE 499

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G+      ++   + G     P  ++P +  ++NI        +A
Sbjct: 500 ENERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPVQACVMNIT---DSQAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 SEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|114776996|ref|ZP_01452016.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114552517|gb|EAU54977.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 634

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 150/439 (34%), Gaps = 49/439 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + +      + + + G+  W P G      V   IR   
Sbjct: 228 KAYLTRLEE----AEKRDHRKLAKSLDLFHLQEEAPGMIFWHPKGWSVWQQVENEIRGVM 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW +SG +D + +EM   +  N +     P +      +F  +
Sbjct: 284 RDNGYQEIKTPQMVDRKLWEKSGHWDKFREEMFTTSTEN-RDYAIKPMNCPCHIQVFNQN 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP    +     R+E      G+MR R F+  DA+ F  T    +         
Sbjct: 343 LHSYRDLPLRLAEFGSCHRNEPSGTLHGLMRLRNFVQDDAHIF-CTEAQIQDEVCNFIDL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++ R G   + +     P     + E    A+    Q   SK       P E   + 
Sbjct: 402 TYDVYKRFGFDDVIIFLSDRPEKRVGTDEQWDKAEAALHQALDSKGIEYGLNPGEGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I  +                            K    R  + G I      +S+P  +
Sbjct: 462 PKIEFSL---------------------------KDCLGRVWQCGTI---QVDFSMPGKL 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D      V +    +G+M     ++   ++GK   W   +AP ++   NI   
Sbjct: 492 DAEYVAEDSSRQTPVMLHRAILGSMERFIGILIEHYEGKFPFW---LAPVQVVACNIT-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++   + K G     D   E++G +     L   P  ++ G +   D  + 
Sbjct: 547 -DAQADYVAEVTKSMHKAGFRAEMDLRNEKVGYKVRAHTLARVPYILVAGDREREDGTIS 605

Query: 418 IKHRLTGIREDMSLEEVIN 436
           ++          S+++ I 
Sbjct: 606 VRDLSGQNLGTFSVDDWIA 624


>gi|307707001|ref|ZP_07643798.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617527|gb|EFN96697.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 647

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S+++ +       +N 
Sbjct: 617 RYAQKETQTVSVDDFVQAILADIANK 642


>gi|331266854|ref|YP_004326484.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683526|emb|CBZ01144.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 647

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLNEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + + ++E +       +N 
Sbjct: 617 RYGQKETQTVPVDEFVAAILADIANK 642


>gi|325578419|ref|ZP_08148554.1| threonine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160155|gb|EGC72284.1| threonine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 643

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 153/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G + +YG  M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G ++I ++  + P                  +   + D  D           
Sbjct: 404 VYDIYSTFGFQNIQVKLSTRP-----------------EKRIGADDMWDRAEAGLAAALA 446

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                  I     A Y    +       D          R  + G I      ++LP  +
Sbjct: 447 HNGLEYEIQAGEGAFYGPKIEFALRDCLD----------REWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 NASYVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPVQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVVKQLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE       +    
Sbjct: 608 VRTRKGADLGTFTIEEFAEILKSQVRQR 635


>gi|289167501|ref|YP_003445770.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
 gi|288907068|emb|CBJ21902.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
          Length = 647

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 177/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S+++ +       +N 
Sbjct: 617 RYGQKETQTVSVDDFVQAILADIANK 642


>gi|317129892|ref|YP_004096174.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315474840|gb|ADU31443.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 645

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 181/442 (40%), Gaps = 35/442 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T +  +  +G+  WLP G      +   I + + R G 
Sbjct: 235 LKMLEEAKERDHRKLGKELGIFT-INQKVGQGLPLWLPKGATIRRTIERYIVDLEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y ++M    + +++ ++  P +      I+++ + SYR
Sbjct: 294 DHVYTPVLGSVELYKTSGHWDHYHEDMFPTMEMDNEDLVLRPMNCPHHMMIYKNQLHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           NLP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++      ++
Sbjct: 354 NLPVRIAELGTMHRHEMSGALAGLQRVRAMTLNDAHIF-CRPDQLKDEFIRVVELVQNVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+     R                  D  + + +   D M     +   +  + +++
Sbjct: 413 QDFGIDDYYFRLSYR--------------DPEDKEKYVDNDEMWEKAQAMLKEAMEDMNV 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           + +  +     A      + ++  +L +++ +S   ++    F+   ++ L     + G 
Sbjct: 459 DYV--EAEGEAAFYGPKLDVQVKTALGKDETLSTVQLD----FHLPNRFELA----YVGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H   +   G+ + M    A +   + G    W   +AP ++ +I +    +V  D 
Sbjct: 509 DGKEHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVEVIPV---SEVHMDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L + G  V  D   E++G +   A +   P  +++G K +  S V ++     
Sbjct: 563 VRRVEDKLKQAGVRVHVDVRDEKLGYKIREAQMQKIPYILVLGDKEIEASTVNVRKYGQK 622

Query: 425 IREDMSLEEVINYASHRFSNNR 446
             E + L+E ++       N +
Sbjct: 623 DSEAVGLDEFVSSMKEEIQNRK 644


>gi|260219598|emb|CBA26443.1| Threonyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 665

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 153/446 (34%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  L +L+E    AE   H+ + R      I +HS G   W P G      V   +R+  
Sbjct: 258 QQHLTMLEE----AEKRDHRKLGRELDLFHIDEHSPGTVFWHPKGWTLWQGVEQYMRKVY 313

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW ++G +D Y + M        +     P +      I++  
Sbjct: 314 QDNGYLEVKGPQIIDKSLWEKTGHWDKYRENMFTTESEK-RDYALKPMNCPGHILIYKQG 372

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  F +     R+E      G+MR R F   D + F  T +  +         
Sbjct: 373 IKSYRDLPLRFGEFGQCHRNEPSGGLHGIMRVRAFTQDDGHIF-CTEDQIQDEVKAFTTL 431

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G  +I  +  + P     + E    A+    +   +       +P E   + 
Sbjct: 432 LQKVYKDFGFTNIIYKLSTRPEKRIGTEEGWDRAENALAEGLRASGCDFEYLPGEGAFYG 491

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I                               K    R  + G I          + A
Sbjct: 492 PKIEYTL---------------------------KDALGRPWQCGTI-QVDPNLPERLDA 523

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F G DG  H  V +    +G++     ++     G    W   +AP +++++NI     
Sbjct: 524 EFVGEDGSRHRPVMLHRAIVGSLERFIGILIEESAGALPAW---LAPVQVAVLNIT---D 577

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D    +   L   G  V  D   E+I  +     +   P  V++G K ++   V ++
Sbjct: 578 AQADYARSVAKTLQNQGLRVHLDLRNEKITYKIREHSMQKLPYLVVIGDKEMAAGAVAVR 637

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M LE  I   +   +N 
Sbjct: 638 ARGGQDLGAMPLESFIERITADIANK 663


>gi|15615703|ref|NP_244007.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
 gi|20139931|sp|Q9K866|SYT_BACHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10175763|dbj|BAB06860.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
          Length = 645

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 81/437 (18%), Positives = 173/437 (39%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L +   +  +  +G+  WLP G      +   I +++ + G 
Sbjct: 237 LRLLEEAKERDHRKLGKELGIFA-LSQKVGQGLPLWLPKGATIRRIIERYIVDKEEKLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S++L+  SG +D Y  +M    +  ++ ++  P +      ++++ ++SYR
Sbjct: 296 QHVYTPVLASSELYKTSGHWDHYKDDMFPTMEMENEELVLRPMNCPHHMMVYKTEMRSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ L  R E+     G+ R R   + DA+ F   P+  K  + ++      ++
Sbjct: 356 QLPLRIAELGLMHRYEMSGAVSGLQRVRGMTLNDAHIF-CRPDQIKDEFVRVVRLIQAVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GLK+   R                  D  + + +   D M         +  D   L
Sbjct: 415 EDFGLKNYSFRLSYR--------------DPEDKEKYFDDDNMWNKAQGMLKEAMD--EL 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 459 ELEYFEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H   +   G+ + M    A +   + G    W   +AP ++ +I +    +   + 
Sbjct: 511 DGQPHRPVVVHRGVVSTMERFVAFLLEEYKGAFPTW---LAPVQVQVIPVSP--EAHLEY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L + G  V  D+  E+IG +   A +   P  +++G K V  + V ++     
Sbjct: 566 AKNVQETLQQAGIRVEIDERDEKIGYKIREAQMQKIPYMLVLGDKEVEANGVNVRKYGEK 625

Query: 425 IREDMSLEEVINYASHR 441
               M L+E + + +  
Sbjct: 626 DSSSMGLDEFVRHVARE 642


>gi|327463110|gb|EGF09431.1| threonine--tRNA ligase [Streptococcus sanguinis SK1]
          Length = 647

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       +N 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIANK 642


>gi|225568704|ref|ZP_03777729.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
 gi|225162203|gb|EEG74822.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
          Length = 583

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 160/440 (36%), Gaps = 47/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M      G   +LP G    + +    R+   R G
Sbjct: 184 YLKRMEEARLRDHRKLGKELGLFAIM--DEGPGFPFFLPKGMVLKNLLIDYWRQLHLREG 241

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y   M      +++     P +      +++   +SY
Sbjct: 242 YVEISTPIILSRHLWENSGHWDHYKDNMYT-TVIDEEDYAVKPMNCPGGMLVYKVEPRSY 300

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    ++ L  R E   +  G+MR R F   DA+ F +T +  +     +      +
Sbjct: 301 KDLPMRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTEDQIRDEIKGVARLIDEV 359

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G K   +   + P     S     +A  G       +  MD+ +   +  F     
Sbjct: 360 YSKFGFKY-HVELSTRPENSMGSDADWEMATEGLRGAL-EELGMDYVVNEGDGAF----- 412

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
                      Y    D H E              R  + G I   F    ++       
Sbjct: 413 -----------YGPKIDFHLEDSIG----------RTWQCGTIQLDFQMPQRF----ELE 447

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H  + +     G++     ++   + GK   W   +AP ++ ++ +      
Sbjct: 448 YTGADGEKHRPIMIHRVAFGSIERFIGILIEHYAGKFPTW---LAPVQVKILPV---SDK 501

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L   G  V  D   E++G +   A +   P  +IVG K V+++ V ++ 
Sbjct: 502 FADYAQKVTDELKAAGIRVELDGRSEKLGYKIREAQMQKVPYMIIVGEKEVAENVVSVRK 561

Query: 421 RLTGIREDMSLEEVINYASH 440
           R  G    M L+        
Sbjct: 562 RDEGDIGSMELKTFTEKVLE 581


>gi|83594816|ref|YP_428568.1| threonyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123753041|sp|Q2RNL4|SYT_RHORT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83577730|gb|ABC24281.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 643

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 159/447 (35%), Gaps = 49/447 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++   +L +L     +AE   H+ + +      + + ++G   W P G      +   +R
Sbjct: 227 KQLDAYLTML----AEAEKRDHRRVGQEMDLFHLQEEAQGAVFWHPKGWTVYRTLQNYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              +  G +E++ P L    LW +SG ++ + + M  +++  DK +   P +      IF
Sbjct: 283 RRLDLAGYVEVNTPMLVDRALWEKSGHWEKFRQNMF-ISEAEDKLLAMKPMNCPCHIQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  IKSYR+LP    +     R+E      G+MR R F+  DA+ F  T +         
Sbjct: 342 KQGIKSYRDLPLRMAEFGACHRNEASGALHGLMRVRAFVQDDAHIF-CTEDQIVSETQAF 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG   I ++    P     S E    A+    +   +        P E  
Sbjct: 401 CDLLKSVYRDLGFTEIKVKFSDRPEVRAGSDETWDKAEAALREATDAAGLEWTLNPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +                               +    R  + G        + LP
Sbjct: 461 FYGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDFVLP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G DG  H  V +    +G       ++  +  G+   W   +AP ++ +  I
Sbjct: 491 ERLGADYVGEDGDKHRPVMLHRAILGTFERFMGILIENCAGRFPFW---LAPVQVVVATI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D    + A L   G     D   E+I  +     L   P+ ++VG K     
Sbjct: 548 TSD---ADDYARTVLAALKAKGLRAVADLRNEKINYKVREHSLAKVPVMLVVGRKEAETG 604

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++      +E ++L+E I   ++ 
Sbjct: 605 GVALRRLGGQSQEVLALDEAIATLANE 631


>gi|94993836|ref|YP_601934.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|123080137|sp|Q1J7X1|SYT_STRPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94547344|gb|ABF37390.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 647

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIQEEFRRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 404 IIDVYADFNLTDYRFRLSYR--------------DPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+EE +       +  +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|225873756|ref|YP_002755215.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|259516262|sp|C1F9K5|SYT_ACIC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225794268|gb|ACO34358.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 681

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 161/452 (35%), Gaps = 48/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             ++F  + +   RD  +   +L L +  I +    G+  W P G      +   +REE 
Sbjct: 265 LDEHFARLEEIAKRDHRVLGKQLDLFS--IQEIAGAGLIFWHPKGAMIRKIMEDWMREEC 322

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G   +  P +    LW  SG    Y + M    + +D      P +      I++S 
Sbjct: 323 IRRGYDLVYTPHVMRVQLWKTSGHEGFYSQNMFTPMELDDAEYRLKPMNCPGHILIYKSQ 382

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP  + ++   +R E      G++R R F   DA+ F  TPE  +         
Sbjct: 383 PRSYRDLPVRYAELGNVYRYERSGTMHGLLRVRGFTQDDAHIF-CTPEQIEDEVVACIDF 441

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +    G     +   +               D  + + +   D              
Sbjct: 442 AQSVLTTFGFMDFQVELST--------------WDPNDRKNYAGSDDKW----------- 476

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-GHIFYFGT---KYSL 296
                N  +    +        +     ++     ++  + ++V G ++   T    ++L
Sbjct: 477 -----NLAISSLESALTRKGIAYKTIAGEAAFYGPKIDIKLVDVLGRLWQLSTVQFDFNL 531

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      + G DG+ H  V +     G++     V+   + G   +W   +AP +I L+ 
Sbjct: 532 PARFELEYVGEDGERHQPVMVHRALYGSVERFFGVLIEHYAGAFPLW---LAPVQIGLVP 588

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +      EK+  +L   G  V  D   E++ ++     L  FP  +I+G K    
Sbjct: 589 I---SERHLAYAEKVQQQLEAAGFRVELDRRNEKMNAKIRDFTLQKFPYVLIMGDKEAEA 645

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V ++ R  G +  + L+E I  A+      
Sbjct: 646 GAVSVRTRGKGDQGSLPLDEFIGRATTLIDTK 677


>gi|270293200|ref|ZP_06199411.1| threonine--tRNA ligase [Streptococcus sp. M143]
 gi|270279179|gb|EFA25025.1| threonine--tRNA ligase [Streptococcus sp. M143]
          Length = 647

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E ++      +N 
Sbjct: 617 RYGQKETNTVPVDEFVSAILADIANK 642


>gi|222095974|ref|YP_002530031.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221240032|gb|ACM12742.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           Q1]
          Length = 639

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 162/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALANVLHSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKIIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEIADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L   +       +N +
Sbjct: 614 YGEEKSEVVELNGFVESMKEEINNRK 639


>gi|127512960|ref|YP_001094157.1| threonyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166225499|sp|A3QEK0|SYT_SHELP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126638255|gb|ABO23898.1| threonyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 642

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 149/447 (33%), Gaps = 45/447 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IR++
Sbjct: 227 KALKAHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELERFIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y + M      N +     P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFTTHSEN-REYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQVQQEVSGCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G   I ++  + P            A+        + D     +P E   +
Sbjct: 403 MVYDTYATFGFHDIVVKLSTRPEKRIGDDAMWDRAEQALMDALKANDIEYEILPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G +      Y+LP  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTV---QLDYALPGR 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+   D      V +    +G++     ++   + GK   W   +AP +  ++NI  
Sbjct: 493 LGATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTW---LAPVQAVVMNITD 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +++       G     D   E+IG +     L   P  ++VG + + + +V
Sbjct: 550 KQS---EYVDEVVKLFKDQGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENREV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       + +++       + S
Sbjct: 607 AVRTRDGVDLGKIKIDQFAAMVKEQIS 633


>gi|325917697|ref|ZP_08179888.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536091|gb|EGD07896.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 634

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIEAEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 408 YTAFGFDDIEIKIALRPEKRLGDDGTWDKAEAALRTALGVCGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        D
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVNADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   +      
Sbjct: 614 EDLGTMTVSAFVERLQAE 631


>gi|294667581|ref|ZP_06732796.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602701|gb|EFF46137.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 634

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 143/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A++               +P E   +   I 
Sbjct: 408 YTAFGFDDIQIKIALRPEKRLGDDATWDKAESALRSALGVCGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     +   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTMQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|182679322|ref|YP_001833468.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635205|gb|ACB95979.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 644

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 159/442 (35%), Gaps = 46/442 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G   W P G      + + +R  Q  
Sbjct: 232 YLKQLEE----AEKRDHRRLGREMDLFHFQEEGPGTVFWHPKGWTLFQTLISYMRRRQQE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E++ P +    LW  SG + +Y + M      +++     P +      IF++ +K
Sbjct: 288 AGYVEVNTPQVLDRALWETSGHWSTYRENMFITTTEDERVFALKPMNCPGHVQIFKNGLK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R E      GVMR R F   DA+ F  T +       K+    L
Sbjct: 348 SYRDLPLKIAEFGVVHRYEPSGALHGVMRVRAFTQDDAHIF-CTEDQIMDEVLKINDLIL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G + I ++  + P     S E    A+   T+V                   + 
Sbjct: 407 SIYRDFGFEDIVIKLSTRPEKRVGSDEAWDKAEAALTRVL------------------EK 448

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +             A         L D++        R  + G        ++LP    A
Sbjct: 449 LGNQFKTGINPGEGAFYGPKLEYTLRDAIG-------REWQCGTT---QVDFNLPGRFGA 498

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +G K   V +     G++     ++   + G   +W   ++P +I +  I    Q
Sbjct: 499 FYIAPEGDKTVPVMIHRAMFGSLERFTGILIEHYAGHLPLW---LSPLQIVVATIT---Q 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++ A   K G  V  D   E+I  +     L   P+  ++G K  ++  V I+
Sbjct: 553 EGDDYAYEVMAAARKRGLRVDGDLRNEKITYKVREHSLAKVPVLFVLGKKEAAERTVSIR 612

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              +  +  + LE+ +   +  
Sbjct: 613 RLGSNDQISLGLEQALELLAAE 634


>gi|206974097|ref|ZP_03235015.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217959885|ref|YP_002338441.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229139078|ref|ZP_04267655.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|206748253|gb|EDZ59642.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217066290|gb|ACJ80540.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228644433|gb|EEL00688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 639

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 161/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S +        +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALANVLHSLNCKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDVRDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L   +       +N +
Sbjct: 614 YGEEKSEVVELNGFVESMKEEINNRK 639


>gi|163940157|ref|YP_001645041.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163862354|gb|ABY43413.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 639

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 162/447 (36%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q
Sbjct: 231 KLEEYLHFVEEAAKRNHRELGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N     E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F++ 
Sbjct: 289 NEYNYQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDHKSFALKPMNCPGHMLMFKNK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +   
Sbjct: 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIQSVLAQ 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P       +    A+     V  S ++       +     
Sbjct: 407 IDYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAELALENVLQSLNYKYRLNEGDG---- 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+L  + +     ++    F    K+      
Sbjct: 462 ----------------AFYGPKIDFHIKDALNRSHQCGTVQLD----FQMPEKF----DL 497

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + 
Sbjct: 498 NYIDENNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NA 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      +I  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++
Sbjct: 553 VHEQYANRIADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L   +        N +
Sbjct: 613 KYGEEKSEVVELNAFVESMKEEIKNRK 639


>gi|239827997|ref|YP_002950621.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259516491|sp|C5D639|SYT_GEOSW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239808290|gb|ACS25355.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 644

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 170/442 (38%), Gaps = 34/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  LQE   RD      +L L      +  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRQLQEAKERDHRKLGKELELFM-TSQKVGQGLPLWLPKGATIRRIIERYIVDKEIELG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y   M    + +++ ++  P +      I++S I SY
Sbjct: 293 YQHVYTPVLGSVELYKTSGHWDHYKDNMFPPMEMDNEQLVLRPMNCPHHMMIYKSKIHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL     R                  D  + + +   D M     +   +  D + 
Sbjct: 412 YKDFGLDEYSFRLSYR--------------DPHDKEKYYDDDEMWEKAQNMLREAMDELG 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                 +     A      + ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 458 --LEYYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYIG 507

Query: 305 ADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +        D
Sbjct: 508 EDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVEVIPVSP--AAHLD 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G  V  D+  E+IG +   A +   P  ++VG K ++++ V ++    
Sbjct: 563 YAYKVKEALQSQGFRVEVDERDEKIGYKIREAQIQKIPYMLVVGDKEMAENAVNVRKYGE 622

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E MSL++ I         N
Sbjct: 623 QKSETMSLDDFIAALKAEVRRN 644


>gi|160900048|ref|YP_001565630.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|238687213|sp|A9C3D4|SYT_DELAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160365632|gb|ABX37245.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 643

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 153/449 (34%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I +HS G   W P G      V   +R   
Sbjct: 233 QQYLHMLEE----AEKRDHRKLGRELDLFHIDEHSPGTVFWHPKGWSLWQEVEQYMRRVY 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y + M        +     P +      IF+  
Sbjct: 289 RDNGYQEVKGPQILDKTLWEKTGHWDKYRENMFTTESEK-RDYALKPMNCPGHILIFKQG 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  + +     R+E      G+MR R F   D + F  T +  +         
Sbjct: 348 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHVF-CTEDQIQPEVLAFTTL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     S E    A+        +        P +   + 
Sbjct: 407 LQKVYADFGFSDIIYKVATRPEARIGSDESWDKAEAALINSLEASGCEYVISPGDGAFYG 466

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G I      +S+P  +
Sbjct: 467 PKIEYTL---------------------------KDAIGRQWQCGTI---QVDFSMPERL 496

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + G DG  H  V +    +G++     ++   H G    W   +AP + +++NI   
Sbjct: 497 DAEYVGEDGDRHRPVMLHRAIVGSLERFIGILIEQHAGAMPTW---LAPVQAAVLNITDA 553

Query: 358 D-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+  +K+       G  V  D   E+I  +     L   P  ++ G K  +   V
Sbjct: 554 QADYVREVAQKLQKAFPNQGLRVATDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       MS++  I   +   +  
Sbjct: 614 AVRARGNKDLGVMSVDAFIELVAKDIAAK 642


>gi|293396370|ref|ZP_06640648.1| threonine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291421159|gb|EFE94410.1| threonine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 387

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 144/418 (34%), Gaps = 42/418 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 1   MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 60

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M   +  N +     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 61  AMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLM 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T +  +   N+       ++   G + I ++  + P     + + 
Sbjct: 120 RVRGFTQDDAHIF-CTEDQVRAEVNECIRMVYDVYGTFGFEKIAVKLSTRPEKRIGTDDM 178

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+                 P E   +   I                           
Sbjct: 179 WTRAEEDLAAALTENGIPFEYQPGEGAFYGPKIEFTL----------------------- 215

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAA 327
                    R  + G +      + LP  + A++ G + +    V +    +G+M     
Sbjct: 216 ----HDCLDRAWQCGTV---QLDFFLPGRLGASYVGENNERVVPVMIHRAILGSMERFIG 268

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++   + G    W   +AP ++ ++NI        D  +++  +L   G  V  D   E+
Sbjct: 269 ILTEEYAGFYPTW---IAPVQVVVMNIT---DSQSDYVQQLTKKLQDAGIRVKADLRNEK 322

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           IG +     L   P  ++ G K V   KV ++ R       + + EV++       + 
Sbjct: 323 IGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVVDKLQKEIRSR 380


>gi|229196601|ref|ZP_04323345.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228586957|gb|EEK45031.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
          Length = 639

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 161/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S +        +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALANVLHSLNCKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEIVDKLAQAGVRVERDVRDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L   +       +N +
Sbjct: 614 YGEEKSEVVELNGFVESMKEEINNRK 639


>gi|210623612|ref|ZP_03293938.1| hypothetical protein CLOHIR_01888 [Clostridium hiranonis DSM 13275]
 gi|210153482|gb|EEA84488.1| hypothetical protein CLOHIR_01888 [Clostridium hiranonis DSM 13275]
          Length = 638

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 158/445 (35%), Gaps = 42/445 (9%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   MI +   G    LP G    + +    RE       
Sbjct: 231 LHMLEEAKKRDHRKLGKELGLF--MIPEEGPGFPLMLPKGMALKNALLEYWREVHRAAEY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +  LW  SG +  Y + M  +   +++     P +       ++S + SYR
Sbjct: 289 VEIETPIILNRKLWETSGHWYHYKENMYTVK-IDEEDYAIKPMNCPGGMLYYKSEMHSYR 347

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    ++    R EL     G+MR R F   DA+ F L PE  +     +      I+
Sbjct: 348 DFPMRVAELGRVHRHELSGALHGLMRVRAFTQDDAHIFML-PEQIRDEIKGVISLIDGIY 406

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P     S E    A+ G        +        +   +   I  
Sbjct: 407 KTFGFEY-HLELSTRPEDSMGSDEEWEAAENGLRGALEELNLPFVVNEGDGAFYGPKIDF 465

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +                                 R  + G I     +      AT+ G 
Sbjct: 466 HLTDC---------------------------IGRTWQCGTI-QLDMQLPRQFDATYIGQ 497

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H  V +     G++     ++   + GK  +W   +AP ++ +I I        D 
Sbjct: 498 DGEKHRPVMIHRVAFGSIERFIGILIEQYAGKFPVW---LAPTQVKIIPI---SDKYADY 551

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+   L   G  V  D   E++G +   A L   P  VIVG K  +++ + ++ R  G
Sbjct: 552 AEKVRKELFDNGLRVEVDGRVEKVGFKIREAQLEKVPYMVIVGEKEEAENNISVRSRDEG 611

Query: 425 IREDMSLEEVINYASHRFSNNRPVL 449
              ++ L + I     +  +   ++
Sbjct: 612 ELGNVELAKFIEDVQAKVKSRENIV 636


>gi|325919878|ref|ZP_08181868.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
 gi|325549662|gb|EGD20526.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
          Length = 634

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 143/437 (32%), Gaps = 38/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD      +  L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKQQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIEAEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 408 YTAFGFDDIEIKIALRPEKRLGDDVTWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G +Y    S     
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDEHSQ---- 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              K H V +    +G+M     ++   H G    W   +AP ++ + NI        D 
Sbjct: 504 ---KKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQADY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R   
Sbjct: 555 VDSVRKTLANQGFRVNADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSGE 614

Query: 425 IREDMSLEEVINYASHR 441
               M++   +      
Sbjct: 615 DLGTMTVSAFVERLQAE 631


>gi|327461002|gb|EGF07335.1| threonine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 647

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       +N 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIANK 642


>gi|254831960|ref|ZP_05236615.1| threonyl-tRNA synthetase [Listeria monocytogenes 10403S]
          Length = 640

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 172/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ +I + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMEIIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|301156314|emb|CBW15785.1| threonyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 643

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 154/448 (34%), Gaps = 44/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G + +YG  M      N +     P +      IF   
Sbjct: 286 KEYDYQEVKGPFMMDRVLWEKTGHWQNYGDLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G ++I ++  + P                  +   + D  D           
Sbjct: 404 VYDIYSTFGFQNIQVKLSTRP-----------------EKRIGADDMWDRAEAGLAAALA 446

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                  I E   A Y    +       D          R  + G I      ++LP  +
Sbjct: 447 HNGLEYEIQEGEGAFYGPKIEFALRDCLD----------REWQCGTI---QLDFALPGRL 493

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A++   D  +   V +    +G++     +I   + G    W   +AP +  ++NI   
Sbjct: 494 NASYVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPVQAVVMNIT-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 549 -DSQADYVQKVVKQLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 607

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE       +    
Sbjct: 608 VRTRKGADLGTFTIEEFAEILKSQVRQR 635


>gi|222152709|ref|YP_002561885.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254783540|sp|B9DU13|SYT_STRU0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222113521|emb|CAR41303.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 648

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 178/450 (39%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T+ +   D M     S      
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPKDTEKYYDNDEMWENAQSMLKAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVE--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 AHIDYAWEVAKALRDRGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +      SL E ++      +  +RPV
Sbjct: 617 RYGSKATHTESLSEFMDTILADIARKSRPV 646


>gi|166711588|ref|ZP_02242795.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 634

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A+                +P E   +   I 
Sbjct: 408 YTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        D
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDAVRKTLANQGFRVSADLRNEKIGYKIREHMLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|30262390|ref|NP_844767.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47527681|ref|YP_019030.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185231|ref|YP_028483.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|165870612|ref|ZP_02215266.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167633022|ref|ZP_02391348.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639601|ref|ZP_02397871.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170686938|ref|ZP_02878157.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170706731|ref|ZP_02897190.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177649587|ref|ZP_02932589.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190565155|ref|ZP_03018075.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227814802|ref|YP_002814811.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229603163|ref|YP_002866723.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684964|ref|ZP_05148824.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254722370|ref|ZP_05184158.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254737411|ref|ZP_05195115.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743403|ref|ZP_05201088.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751726|ref|ZP_05203763.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254760245|ref|ZP_05212269.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30257021|gb|AAP26253.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47502829|gb|AAT31505.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179158|gb|AAT54534.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|164713767|gb|EDR19290.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512310|gb|EDR87686.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167531834|gb|EDR94499.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128462|gb|EDS97330.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170668989|gb|EDT19733.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172084661|gb|EDT69719.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190563182|gb|EDV17147.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227004862|gb|ACP14605.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229267571|gb|ACQ49208.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 639

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       E    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                   + L+  +       +N +
Sbjct: 614 YGEEKSGVIELDMFVESMKEEINNRK 639


>gi|304391869|ref|ZP_07373811.1| threonyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303296098|gb|EFL90456.1| threonyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 663

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 157/447 (35%), Gaps = 42/447 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L +L+E    A+   H+ + R        +   G+  W   G K   ++ + +R
Sbjct: 231 KQLKQYLHMLEE----AQKRDHRKLGREMDLFHFQEEGPGVVFWHAKGWKVFQHLVSYMR 286

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G  E++ P +    LW  SG +  Y + M      +++     P +      IF
Sbjct: 287 RRIEEHGYDEVNAPQILDKALWETSGHWGWYRENMFTTVTEDERQFAIKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ ++SYR LP    +     R E      G+MR R F   DA+ F  TPE  +    ++
Sbjct: 347 KNGLRSYRELPVKMAEFGNVHRYEPSGALHGLMRVRGFTQDDAHVF-CTPEQLEEECLRI 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     S E    ++                I  +  
Sbjct: 406 NDLILSTYSDFGFGDIVVKLSTRPEKRVGSEEGWDRSE---------------EIMGKVL 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +     S   I  +      A      E +       +    R  + G        ++LP
Sbjct: 451 EKIAADSDGRIKTELNPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFALP 501

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +   D +    V +     G+M     ++     G   +W   ++P ++ +  I
Sbjct: 502 ERFGAFYIDKDSQKQEPVMVHRAICGSMERFIGILIEHFAGHFPLW---ISPLQVVVATI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +         E +   L + G  V  D   E+I  +     L   P+ + VG +   + 
Sbjct: 559 TS---EADPYGEIVAEELREAGLRVETDFRNEKINYKVREHSLAKVPVIIAVGGREAEER 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++   +  +  M+L+E +   S  
Sbjct: 616 TVSVRRLGSKHQTSMTLDEAVASLSDE 642


>gi|113460987|ref|YP_719054.1| threonyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123031343|sp|Q0I3M2|SYT_HAES1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112823030|gb|ABI25119.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Haemophilus
           somnus 129PT]
          Length = 642

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 145/448 (32%), Gaps = 44/448 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G + +Y   M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P            A+ G                 E   +   I 
Sbjct: 408 YSTFGFTDIFVKLSTRPEKRIGEDVMWDRAEQGLANALKHNGLEYEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G I      ++LP  + AT+
Sbjct: 468 FAL---------------------------RDCLDREWQCGTI---QLDFALPGRLDATY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G++     +I   + G    W   +AP +  ++NI       
Sbjct: 498 VAEDNARRTPVMIHRAILGSIERFIGIITEEYAGFFPTW---LAPIQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+  + S+ G  V  D   E++G +     L   P  ++ G K + ++K+ ++ R
Sbjct: 552 ADYVQKVVKQFSEAGLRVKADIRNEKVGFKIREHTLRRVPYMLVCGDKEIVENKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                   S+EE +     +       L
Sbjct: 612 KGTDLGTFSVEEFVEILKQQVRKRELTL 639


>gi|291563461|emb|CBL42277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SS3/4]
          Length = 646

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 158/446 (35%), Gaps = 49/446 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L L   M+     G   +LP G    + +    RE   + G +E+
Sbjct: 235 MEEAKKRDHRKLGKELGLF--MMSDAGPGFPFFLPKGMVLKNTLLDYWREIHKKAGYVEI 292

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           S P + +  LW  SG +D Y   M      + +     P +      ++ S  +SYR+LP
Sbjct: 293 STPIILNRSLWETSGHWDHYKNNMYTTI-IDGEDYAIKPMNCPGGVLVYASEPRSYRDLP 351

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E   +  G+MR R F   DA+ F +TPE  +     +     +++   
Sbjct: 352 LRMGELGIVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIRDEIKNVAGLINQVYSLF 410

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G K   +   + P     S E   LA +                 S     DD+     I
Sbjct: 411 GFKY-HVELSTRPEDSMGSDEDWELATS-----------------SLQGALDDLGLDYVI 452

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGA 305
            E   A Y    D H                R  + G I   F    ++       + GA
Sbjct: 453 NEGDGAFYGPKIDFHLVDAIG----------RTWQCGTIQLDFQLPQRF----ELEYIGA 498

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H  + +     G++     ++     G    W   +AP ++ ++ I    +   + 
Sbjct: 499 DGEKHRPIMIHRVCFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---SEKYEEY 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + + A L         D   E+IG +   A     P  ++VG K  +D  V ++ R  G
Sbjct: 553 AKSVKAALDAADIRAEIDLRSEKIGYKIREAQGQKIPYMLVVGQKEQADGTVSVRSRFKG 612

Query: 425 IREDMSLEEVINYASHRFSN--NRPV 448
                 L   I       +   NRPV
Sbjct: 613 DEGAEDLNVFIANIKAEIAGRVNRPV 638


>gi|228985474|ref|ZP_04145631.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774239|gb|EEM22648.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 639

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 161/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALANVLHSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEIADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L   +        N +
Sbjct: 614 YGEEKSEVIELNGFVESIKEEIKNKK 639


>gi|157150881|ref|YP_001450077.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189083628|sp|A8AWB7|SYT_STRGC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157075675|gb|ABV10358.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 647

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 AAGYQHVYTPPLASVELYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    ++++E +       +N 
Sbjct: 617 RYGQKETHTVAVDEFVEAILADIANK 642


>gi|209558991|ref|YP_002285463.1| threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238065119|sp|B5XKA6|SYT_STRPZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209540192|gb|ACI60768.1| Threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 647

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 404 IIDVYADFNLTDYRFRLSYR--------------DPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKILRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+E+ +       +  +RP
Sbjct: 615 RYGSKATHTESVEDFVENILADIARKSRP 643


>gi|65319684|ref|ZP_00392643.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
          Length = 485

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 78  LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 135

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 136 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 194

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 195 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 253

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       E    A+     V  S ++       +      
Sbjct: 254 DYVYKTFGFEY-EVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDG----- 307

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 308 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 344

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 345 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 399

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 400 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 459

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                   + L+  +       +N +
Sbjct: 460 YGEEKSGVIELDMFVESMKEEINNRK 485


>gi|229155963|ref|ZP_04284064.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228627570|gb|EEK84296.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 639

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 161/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALANVLHSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEIADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L   +        N +
Sbjct: 614 YGEEKSEVIELNGFVESIKEEIKNKK 639


>gi|194366578|ref|YP_002029188.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|238693469|sp|B4SQH4|SYT_STRM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194349382|gb|ACF52505.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 633

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 152/445 (34%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ + ++  ++E    AE+  H+ + +      + + + G+  W P G      V   +R
Sbjct: 227 KQLEAYIKRIEE----AEMRDHRRIGKQQDLFHLQEEAPGLVFWHPKGWALWQVVEQYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   +TG  E+  P +    LW +SG +D+Y   M    +   +     P +      +F
Sbjct: 283 KVYRKTGYGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYALKPMNCPGHVQVF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              + SYR+LP  + +     R+E      G++R R F   D + F  T    +      
Sbjct: 342 NQGLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVF-CTENQVEAEVTAF 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I ++    P            A+        S       +P E  
Sbjct: 401 HQQALAVYQHFGFDEIQVKIALRPESRLGDDATWDKAEGALRSALSSNGVEWQELPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L D++    ++    ++       G      
Sbjct: 461 FYGPKIEY--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG------ 494

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   +  K H V +    +G+M     ++   H G+   W   +AP ++ + NI  
Sbjct: 495 --AEYVDENSQKKHPVMLHRAIVGSMERFLGILIEHHAGQFPAW---LAPTQVVVANIT- 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +    +   L+  G  V  D   E+IG +     L   P  +++G +   +  V
Sbjct: 549 --DAQAEYVSDVTKTLADQGFRVSADLRNEKIGYKIREHTLQRVPYLLVIGDREKENGAV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ R       MSL+  I      
Sbjct: 607 AVRTRSGEDLGSMSLQAFIERLQAE 631


>gi|325690794|gb|EGD32795.1| threonine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 647

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMDVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       +N 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIANK 642


>gi|262282640|ref|ZP_06060408.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261931|gb|EEY80629.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 647

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 AAGYQHVYTPPLASVELYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    ++++E +       +N 
Sbjct: 617 RYGQKETHTVAVDEFVEAILADIANK 642


>gi|319763197|ref|YP_004127134.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|330825391|ref|YP_004388694.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|317117758|gb|ADV00247.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|329310763|gb|AEB85178.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 639

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 94/447 (21%), Positives = 160/447 (35%), Gaps = 47/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R      I +HS G   W P G      V   +R     
Sbjct: 231 YLHMLEE----AEKRDHRRLGRELDLFHIDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y + M  + +   +     P +      IF+  IK
Sbjct: 287 NGYQEVKAPQILDKSLWEKTGHWDKYRENMF-VTESEKRDYALKPMNCPGHILIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F  T +  +H          
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIF-CTEDQIQHEVLAFTRLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R++   G   I  +  + P     S E    A+    +   +        P E   +   
Sbjct: 405 RVYQDFGFTDIVYKVATRPDARIGSDEIWDKAEAALIESLKASGCDFEISPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 465 IEYTL---------------------------KDAIGRHWQCGTI---QVDFSMPERLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHD 358
            + G DG  H  V +    +G++     ++   H G   +W   +AP +++++NI  A  
Sbjct: 495 EYVGEDGGRHRPVMLHRAIVGSLERFIGILIEQHAGALPVW---LAPVQVAVLNITDAQS 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             CR+   K+   L      V  D   E+I  +     L   P  ++ G K  +   V +
Sbjct: 552 DYCREIAAKLQKALPHQDLRVVQDLRNEKITYKIREHALQKLPYILVAGDKEKAAGAVAV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       MSL+  +   +   ++ 
Sbjct: 612 RARGNKDLGVMSLDAFVELIARDIASK 638


>gi|210634040|ref|ZP_03297958.1| hypothetical protein COLSTE_01876 [Collinsella stercoris DSM 13279]
 gi|210158984|gb|EEA89955.1| hypothetical protein COLSTE_01876 [Collinsella stercoris DSM 13279]
          Length = 587

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 162/444 (36%), Gaps = 48/444 (10%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L +L+E    A+   H+ + R     M+   + G   +LP G    + +    RE  ++ 
Sbjct: 185 LTMLEE----AKKRDHRRIGREMDLFMMRDEAPGFPFFLPNGMILKNTLLDYWREIHHKA 240

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+S P + ++ LW  SG +D Y   M      + +     P +      ++ S   S
Sbjct: 241 GYVEISTPQIMNSQLWKTSGHWDHYKDNMYSTM-IDGEEYCIKPMNCPGGVLVYASKPHS 299

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +I L  R EL+    G+ R R F   DA+ F +TPE        +      
Sbjct: 300 YRELPIRAGEIGLVHRHELKGALHGLFRVRCFNQDDAHLF-VTPEQLTDEIVGVVNLITS 358

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G     +   + P     S E    A+ G       +  M++ +   +  F    
Sbjct: 359 VYDKFGFTY-HLELSTRPEDSMGSDEDWERAEAGLKTAL-ERLGMEYVVNEGDGAF---- 412

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                       Y    D H E              R  + G +     +        + 
Sbjct: 413 ------------YGPKIDFHLEDSLG----------RTWQCGTV-QLDFQMPQNFDLEYV 449

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG K   + +     G++     ++     GK  +W   +AP ++ ++ +    +  R
Sbjct: 450 DADGTKKRPIMLHRVCFGSIERFIGILIEHFAGKFPVW---LAPMQVKVLPV---SEKSR 503

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   ++ A+L   G  V  DD  E+IG +   A      P  +I+G K V    + ++ R
Sbjct: 504 DYAHEVTAKLEAAGIRVVCDDRDEKIGYKIREARGTDRVPYMLILGEKEVEAGNISVRDR 563

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            T     M ++E I          
Sbjct: 564 -TNETVPMGVDEFIAKVREEIDTR 586


>gi|117923678|ref|YP_864295.1| threonyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|259516564|sp|A0L4J6|SYT_MAGSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117607434|gb|ABK42889.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Magnetococcus
           sp. MC-1]
          Length = 648

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 151/442 (34%), Gaps = 38/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L + +      G+  W P G +    +    ++     G
Sbjct: 232 YLTQMEEAEKRDHRRIGKDLDLFS-VQEDAGGGLVFWHPRGSRIRRVIEDFWKDRHVEAG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + +  LW  SG  D Y   M    + +++A    P +      I++    SY
Sbjct: 291 YEFLYTPHIANRQLWNTSGHTDFYSDSMFSPMEVDEQAYQIRPMNCPFHILIYKDRRHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LPF + ++   +R E+     G+ R R F   DA+ F  T +  +    ++    L I
Sbjct: 351 RELPFRWGELGTVYRYEMSGALHGLFRVRGFTQDDAHIF-CTEQQIEEEIQRILDLTLDI 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P     S      A     +   S+D                  
Sbjct: 410 LRTYGFSDFEINLSTRPEKSVGSAAIWDKATEALRRAIVSRDLSYVVDEGGG-------- 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ DS+    + S   ++    F    ++       + G
Sbjct: 462 ------------AFYGPKIDVKITDSIGRKWQCSTVQLD----FNLPERF----DMGYIG 501

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  + +    +G++     ++   + G   +W   +AP +  + +I         
Sbjct: 502 EDGESHRPIMIHRALMGSLERFFGILVEHYAGWFPMW---LAPVQAVVCSIT---DAQHA 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E + A L K G  V  D   E++G +     L   P  ++VG K   +  V ++ R  
Sbjct: 556 YAETVLAALKKAGLRVEIDLRNEKVGYKIREHTLKRVPYLLVVGDKEREEGTVNVRLRSG 615

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +++V+       ++ 
Sbjct: 616 KSLGSLPIQDVVERLVEEAASR 637


>gi|325982725|ref|YP_004295127.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532244|gb|ADZ26965.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 635

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 163/444 (36%), Gaps = 45/444 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      +L L    +   + G+  W P G      +   +R   + 
Sbjct: 229 KNYLHRLEEAEKRDHRKIGKQLNLF--HMQDEASGMVFWHPKGWTLWQQIEQYMRNILSH 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +   DLWV SG ++++ + M  +   +++     P +      IF   ++
Sbjct: 287 NGYHEIRTPQILDKDLWVRSGHWENFRENMF-ITHSDERDFAIKPMNCPGHVQIFNQGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  F +     R+E      G+MR R F   DA+ F  T +  +    +      
Sbjct: 346 SYRELPIRFAEFGSCHRNEASGALHGIMRVRAFTQDDAHIF-CTEDQIQQEVVEFIDLLK 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G + I ++  + P+    S      ++                 P E   +   
Sbjct: 405 IVYADFGFREILIKLSTRPLKRVGSEAQWDKSEAALEAALNEVKLEWERQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G        +S+P  + A
Sbjct: 465 IEFSL---------------------------KDCIGRLWQCGT---LQLDFSMPDRLGA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D      V +    +G++     ++  ++ G   +W   ++P ++ ++NI    +
Sbjct: 495 EYVAEDNSRQVPVMLHRAILGSLERFIGILIENYAGALPLW---LSPEQVVVLNI---SR 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +K+ A+L + G     D   E+I  +     L   P Q+IVG + V  +K+ ++
Sbjct: 549 TQIDYAQKVVAQLKENGVRASLDLRNEKITYKIREHSLQKLPYQIIVGDEEVRANKIAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
           +R+      M L + +   +   S
Sbjct: 609 NRVGENLGQMKLPDFLVRFNEELS 632


>gi|16800662|ref|NP_470930.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|22654125|sp|Q92BF5|SYT_LISIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16414081|emb|CAC96825.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|313618753|gb|EFR90658.1| threonyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 640

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 173/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           ++++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MNMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|312898595|ref|ZP_07757985.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620514|gb|EFQ04084.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 635

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 151/435 (34%), Gaps = 42/435 (9%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + +       H+   G   + P G      +     E  +R    ++S P 
Sbjct: 237 EAERRDHRKLGKEMDLFSFHEEGPGFPFFHPKGMLLRQTLLKFWNELHDRYEYDQISTPI 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG +D Y + M      +D+     P +      +++S++ SYR+ P    
Sbjct: 297 ILNRQLWEQSGHWDHYRENMY-FTTIDDEPYAIKPMNCPGGILVYKSNVHSYRDFPMRTA 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ L  R EL     G+ R R F   DA+ F L P   K     +   +   +   GL  
Sbjct: 356 ELGLVHRHELHGALHGLFRVRSFTQDDAHIFML-PSQMKKEITGVLDLFDEAYKMFGLPY 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P     S E   LA     +    K         +   +   +         
Sbjct: 415 -HVELSTRPENSMGSDEIWDLATQTLKEAIEEKGVPYQINEGDGAFYGPKLDF------- 466

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                                 K    R  + G I             T+ G DG+ H  
Sbjct: 467 --------------------HVKDSIGRTWQCGTI-QLDMLMPERFDMTYVGEDGQKHRP 505

Query: 313 QM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            M      G++     ++   + G   +W   +AP ++ ++ I    +   D   ++  +
Sbjct: 506 VMVHRACFGSIERFIGILIEHYAGAFPVW---LAPTQVKILPI---SEKQMDYAVELRKK 559

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             K G  V  D+  E+IG +   A +   P   ++G K V +  V ++ R  G     ++
Sbjct: 560 FKKAGIRVELDESNEKIGYKIRKAQMEKVPYMCVIGEKEVQEQTVSVRDRSQGDLGSRNV 619

Query: 432 EEVINYASHRFSNNR 446
           +E I +      + +
Sbjct: 620 DEFIAHIQELSESRK 634


>gi|302024085|ref|ZP_07249296.1| threonyl-tRNA synthetase [Streptococcus suis 05HAS68]
 gi|330832440|ref|YP_004401265.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329306663|gb|AEB81079.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 649

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 180/450 (40%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 TSGYQHVYTPPLASVELYKTSGHWEHYSEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 347 VRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIF-VTPEQIQEEFKKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  + + +   D M            
Sbjct: 406 IIDVYADFNLNDYRFRLSYR--------------DPEDKEKYYDNDEMWENAQRMLKGAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I    +
Sbjct: 502 TYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPTQVTMIPISV--E 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K + D+ V ++
Sbjct: 557 AHLDYAWKVAKELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +   +  S+ E +++     +  +RP 
Sbjct: 617 RYGSKATQTQSVAEFVDHILADIARKSRPA 646


>gi|253755215|ref|YP_003028355.1| threonyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251817679|emb|CAZ55427.1| threonyl-tRNA synthetase [Streptococcus suis BM407]
          Length = 650

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 180/450 (40%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYSEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 347 VRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIF-VTPEQIQEEFKKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  + + +   D M            
Sbjct: 406 IIDVYADFNLNDYRFRLSYR--------------DPEDKEKYYDNDEMWENAQRMLKGAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I    +
Sbjct: 502 TYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPTQVTMIPISV--E 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K + D+ V ++
Sbjct: 557 AHLDYAWKVAKELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +   +  S+ E +++     +  +RP 
Sbjct: 617 RYGSKATQTQSVSEFVDHILADIARKSRPA 646


>gi|229815156|ref|ZP_04445493.1| hypothetical protein COLINT_02202 [Collinsella intestinalis DSM
           13280]
 gi|229809386|gb|EEP45151.1| hypothetical protein COLINT_02202 [Collinsella intestinalis DSM
           13280]
          Length = 595

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 164/431 (38%), Gaps = 44/431 (10%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+ + R     M+   + G   +LP G    + +    RE  ++ G +E+S P 
Sbjct: 198 EAKKRDHRRIGREMDLFMMRDEAPGFPFFLPNGMVLKNTLLDYWREIHHKAGYVEISTPQ 257

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW+ SG +D Y   M      +D+     P +      ++ S   SYR LP    
Sbjct: 258 IMNKSLWLTSGHWDHYKDNMYSTM-IDDEEYCIKPMNCPGGVLVYSSKPHSYRELPIRAG 316

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +I L  R ELR    G+ R R F   DA+ F +TPE        +      ++ + G K 
Sbjct: 317 EIGLVHRHELRGALHGLFRVRCFNQDDAHLF-VTPEQLTDEIVGVVRLIDSVYQKFGFKY 375

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P     S E    A+ G  +V   K  MD+ +   +  F             
Sbjct: 376 -HVELSTRPEDSMGSDEDWAAAEEGL-KVALDKLGMDYVVNEGDGAF------------- 420

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHY 311
              Y    D H E              R  + G +     +       T+  ADG K   
Sbjct: 421 ---YGPKIDFHLEDSLG----------RTWQCGTV-QLDFQMPQNFDLTYVDADGEKKRP 466

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + +     G++     ++   + GK  +W   +AP ++ ++ +    +  RD   ++  +
Sbjct: 467 IMLHRVCFGSIERFIGILIEHYAGKFPVW---LAPMQVKVLPV---SEKSRDYAHQVTEQ 520

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L   G  V  DD  E+IG +   A  +   P  +I+G K V    + ++ R       M+
Sbjct: 521 LEAAGIRVVCDDRDEKIGYKIREARGVDRVPYMLILGEKEVEAGNISVRDRSN-ETVPMA 579

Query: 431 LEEVINYASHR 441
           ++E I      
Sbjct: 580 VDEFIAKVVEE 590


>gi|146319020|ref|YP_001198732.1| threonyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146321228|ref|YP_001200939.1| threonyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253752085|ref|YP_003025226.1| threonyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753910|ref|YP_003027051.1| threonyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|166225507|sp|A4W2F0|SYT_STRS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225509|sp|A4VW43|SYT_STRSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145689826|gb|ABP90332.1| Threonyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145692034|gb|ABP92539.1| Threonyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251816374|emb|CAZ52005.1| threonyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251820156|emb|CAR46495.1| threonyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292558668|gb|ADE31669.1| Threonyl-tRNA synthetase [Streptococcus suis GZ1]
 gi|319758452|gb|ADV70394.1| threonyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 650

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 180/450 (40%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYSEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 347 VRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIF-VTPEQIQEEFKKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  + + +   D M            
Sbjct: 406 IIDVYADFNLNDYRFRLSYR--------------DPEDKEKYYDNDEMWENAQRMLKGAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I    +
Sbjct: 502 TYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPTQVTMIPISV--E 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K + D+ V ++
Sbjct: 557 AHLDYAWKVAKELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +   +  S+ E +++     +  +RP 
Sbjct: 617 RYGSKATQTQSVSEFVDHILADIARKSRPA 646


>gi|261406470|ref|YP_003242711.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261282933|gb|ACX64904.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 636

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 154/435 (35%), Gaps = 41/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   M  + + G+  +LP G    + +    R  Q      E+  P
Sbjct: 239 AKKRDHRKLGKELGLF--MFSEEAPGMPFFLPNGMIIRNELEQFARGLQFHRDYDEVRTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +D Y   M      ++      P +      ++++ + SYR LP   
Sbjct: 297 LMMNKRLWEMSGHWDHYKDNMY-FTQVDETEYALKPMNCPGHMLVYKNSLHSYRELPIRI 355

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F + P+  +    ++     R++   G +
Sbjct: 356 SEFGQVHRHEFSGALNGMMRVRTFCQDDAHIF-VRPDQIQEEIKQVIDFISRVYQVFGFE 414

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A+T   QV             +   +   I  + +   
Sbjct: 415 Y-TIELSTRPEDSMGSEELWEQAETSLQQVLDQLGLPYRINEGDGAFYGPKIDFHILDS- 472

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                                       R  + G I     ++      ++ G D + H 
Sbjct: 473 --------------------------LKRSWQCGTI-QLDFQFPEKFDLSYIGEDNQKHR 505

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++   + G   +W   +AP ++ +I +  H     D   K+  
Sbjct: 506 PVVIHRAVFGSIERFIGILTEHYGGAFPMW---LAPVQVMIIPVSDH---YIDYSLKVKK 559

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL   G  V  D   E++G +   A LL  P  +++G K +    V ++ R  G   +++
Sbjct: 560 RLENAGIRVNVDVRNEKLGYKIREAGLLKTPYTLVLGEKEMDSDHVSVRKRGEGELGEIA 619

Query: 431 LEEVINYASHRFSNN 445
           +++VI    +   + 
Sbjct: 620 IDQVIERLRNEIESK 634


>gi|229091361|ref|ZP_04222576.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228691990|gb|EEL45732.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
          Length = 639

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPTW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L   +       +N +
Sbjct: 614 YGEEKSEVVELNGFVESMKEEINNRK 639


>gi|313637683|gb|EFS03062.1| threonyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 483

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 175/444 (39%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 71  KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 129

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 130 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 189

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 190 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 248

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 249 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWDKAQAMLKSAMDE 294

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 295 MGMD--YFEADGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 344

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 345 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 399

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++  
Sbjct: 400 LDYAKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVRRY 459

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I+      S  
Sbjct: 460 GSKDSETMELDTFISQVVQEVSKY 483


>gi|313680219|ref|YP_004057958.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
 gi|313152934|gb|ADR36785.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
          Length = 649

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 103/451 (22%), Positives = 173/451 (38%), Gaps = 46/451 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
              Y   + +   RD      +L L    I     KG+  WLP G    + + A +R+EQ
Sbjct: 234 LEHYLWQLEEAKKRDHRRLGRQLELF--HIDPMVGKGLVLWLPKGNVLREELVAFMRDEQ 291

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRS 120
            + G   ++ P + S +L+  SG Y  Y +      +  + +A +  P +      I+  
Sbjct: 292 IKRGYQLVTTPHIGSLELYKTSGHYPYYAESQFPPMELEDGEAYLLKPMNCPHHVRIYAM 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP    +    +R E      G+ R R F   DA+ F  TPE  K  +  +  
Sbjct: 352 RPRSYRELPLRLAEFGTVYRFEQSGELHGLTRVRGFTQDDAHIF-CTPEQVKEEFLGVLD 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV--FCSKDFMDFPIPSENT 237
             L++F  LGL     R      G D            E Q+   C +  +D+ I   + 
Sbjct: 411 LTLKVFRTLGLSDFRARIGVRDPGSDKYVGDAEHWAVAERQIQEACDEAGLDYTIEEGDA 470

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F        +                          K V +R  ++G I      Y+LP
Sbjct: 471 AFYGPKLDFVV--------------------------KDVLSREWQLGTI---QVDYNLP 501

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +KGADG++H  V +     G++     ++     G+  +W   +AP ++ ++ I
Sbjct: 502 ERFDIGYKGADGEEHRPVMIHRAPFGSLERFIGILIEHFAGEFPLW---LAPVQVVVVPI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D   K+ A L   G  V  DD  E++ ++   A+    P+ ++VG K   + 
Sbjct: 559 T---DRHHDYARKVRAELEAAGLRVEVDDRPERMNAKIRDAETQKVPVILVVGDKETEEG 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R TG R   +L EV+   + R    
Sbjct: 616 TVAVRDRRTGERTTRALSEVVRDLAERVRTR 646


>gi|46907789|ref|YP_014178.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093096|ref|ZP_00230873.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217964294|ref|YP_002349972.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|226224160|ref|YP_002758267.1| threonyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824382|ref|ZP_05229383.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852182|ref|ZP_05241530.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|254931499|ref|ZP_05264858.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|255520160|ref|ZP_05387397.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
 gi|290893960|ref|ZP_06556936.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|300764775|ref|ZP_07074765.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|67461796|sp|Q71ZA9|SYT_LISMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783526|sp|B8DHI9|SYT_LISMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516560|sp|C1KVK6|SYT_LISMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46881058|gb|AAT04355.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018536|gb|EAL09292.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217333564|gb|ACK39358.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|225876622|emb|CAS05331.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605487|gb|EEW18095.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|290556498|gb|EFD90036.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|293583051|gb|EFF95083.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293593617|gb|EFG01378.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300514451|gb|EFK41508.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|307571140|emb|CAR84319.1| thrS [Listeria monocytogenes L99]
 gi|313608610|gb|EFR84472.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
 gi|328465594|gb|EGF36823.1| threonyl-tRNA synthetase [Listeria monocytogenes 1816]
 gi|332312001|gb|EGJ25096.1| Threonyl-tRNA synthetase [Listeria monocytogenes str. Scott A]
          Length = 640

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 172/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|229017690|ref|ZP_04174581.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228743616|gb|EEL93725.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 639

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 162/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + +LW +SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFQY-EVELSTRPEDSMGDDKLWEQAEAALANVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G   +W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPVW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++ 
Sbjct: 554 HVQYANEVAHKLAQAGIRVEEDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 + + L+  +        N +
Sbjct: 614 YGEEESKIVELDAFVESMKEEMKNRK 639


>gi|313623625|gb|EFR93788.1| threonyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 640

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 172/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MHMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|315303326|ref|ZP_07873955.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628306|gb|EFR96810.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 640

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 173/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFRLSYR--------------DPKNTEKYFDDDAMWDKAQTMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MGMD--YFEADGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IAEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L++ I       S  
Sbjct: 617 GSKDSETMDLDKFIAQVVAEVSKY 640


>gi|313633110|gb|EFS00008.1| threonyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 485

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 175/444 (39%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 73  KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 131

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 132 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 191

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 192 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 250

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 251 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWDKAQAMLKSAMDE 296

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 297 MGMD--YFEADGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 346

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 347 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 401

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++  
Sbjct: 402 LDYAKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVRRY 461

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I+      S  
Sbjct: 462 GSKDSETMELDTFISQVVQEVSKY 485


>gi|154502817|ref|ZP_02039877.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
 gi|153796700|gb|EDN79120.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
          Length = 642

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 94/447 (21%), Positives = 164/447 (36%), Gaps = 48/447 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L   M+     G   +LP G    + +    RE   +
Sbjct: 228 EEYLNMLEEAKKRDHRKLGKELGLF--MMRDEGPGFPFFLPNGMVLKNVLLDYWREIHRK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + S  LW  SG +D Y + M      +++     P +       +++  +
Sbjct: 286 AGYVEISTPVMLSRHLWETSGHWDHYKENMYT-TVIDEEDFAIKPMNCPGGILAYQAEPR 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     
Sbjct: 345 SYRDLPIRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIN 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K   +   + P     S E   +A                         DD+
Sbjct: 404 EVYSLFGFKY-HVELSTRPEDSMGSDEDWEMATDALR-----------------GALDDL 445

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
                + E   A Y    D H E              R  + G I   F    ++     
Sbjct: 446 GLPYVVNEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPLRF----E 491

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GADG+ H  + +     G++     ++     G    W   +AP ++ ++ I    
Sbjct: 492 LEYTGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPI---S 545

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  + +  +L+  G     D   E+IG +   A +   P  ++VG+K   + KV +
Sbjct: 546 DKYLEYGQSVLDQLNAAGIRAEIDTRAEKIGYKIREAQMKKIPYMLVVGAKEEEEKKVSV 605

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G      LEE I       +  
Sbjct: 606 RSRFAGDEGQKGLEEFIAAIMEETAKK 632


>gi|319946565|ref|ZP_08020800.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319747311|gb|EFV99569.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 647

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYGDFNLNEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    +S++E +       +N 
Sbjct: 617 RYGQKETNTVSVDEFVAAILADIANK 642


>gi|299822779|ref|ZP_07054665.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816308|gb|EFI83546.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 640

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 173/443 (39%), Gaps = 34/443 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K FL + +E   RD      +L L   +  +  +G+  WLP G      +   I + + R
Sbjct: 228 KAFLKMQEEAKERDHRKLGKELGLFA-ISQEVGQGLPLWLPKGATIRRVIERYIVDREER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   D + +SG +D Y ++M      +++ ++  P +      ++++ I 
Sbjct: 287 LGYSHVYTPIMAKVDFYKQSGHWDHYHEDMFPPMKMDNEELVLRPMNCPHHMMVYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVLELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R                  D   T+ +   D M     +   D  D 
Sbjct: 406 AVYKDFDITDYKFRLSYR--------------DPENTEKYFDDDAMWEKAQTMLKDAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ +I +       
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPIQMQIIPVNR--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +L + G  V  DD  E++G +   A     P  ++VG +   +  V I+  
Sbjct: 557 FDYAKEVEDKLVRAGLRVEIDDRNEKLGYKIREAQTQKIPYALVVGDQESENGTVNIRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            +   E +S+++ I       + 
Sbjct: 617 GSKDSETLSVDDFIKQVVAEVNK 639


>gi|293364941|ref|ZP_06611658.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703194|ref|ZP_07640140.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316391|gb|EFE56827.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623269|gb|EFO02260.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 647

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S+++ +        N 
Sbjct: 617 RYGQKETQTVSVDDFVQAILADIVNK 642


>gi|261418266|ref|YP_003251948.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767774|ref|YP_004133275.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374723|gb|ACX77466.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112640|gb|ADU95132.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 652

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 175/446 (39%), Gaps = 34/446 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    Q  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRLLEEAKERDHRKLGKELELFT-TSQQVGQGLPLWLPKGATIRRIIERYIVDKEVALG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + SY
Sbjct: 293 YDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G++    R                  D  + + +   D M         +  D + 
Sbjct: 412 YKDFGIEEYSFRLSYR--------------DPHDKEKYYDDDEMWEKAQRMLREAMDELG 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+    +     A      + ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 458 LD--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYIG 507

Query: 305 ADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    +   D
Sbjct: 508 EDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVKVIPVSP--EAHLD 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L + G  V  D+  E+IG +   A +   P  ++VG K VS+  V ++    
Sbjct: 563 YAYDVQRTLKERGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEVSERAVNVRRYGE 622

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
                M L+E +   +      R  L
Sbjct: 623 KESRTMGLDEFMALLADDVREKRTRL 648


>gi|116328741|ref|YP_798461.1| threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331652|ref|YP_801370.1| threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280605|sp|Q04R58|SYT_LEPBJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122283474|sp|Q04ZG7|SYT_LEPBL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116121485|gb|ABJ79528.1| Threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125341|gb|ABJ76612.1| Threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 639

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 158/446 (35%), Gaps = 44/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L +    +   G   W P G    +++   +R E N
Sbjct: 232 LDQYLFQIEEAKKRDHRKIGKELDLFS--FQKEGPGFPFWHPKGTILWNSLADYLRAECN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+
Sbjct: 290 KRGYQEIKTPAVLSSELWKKSGHWDNFHENMY-FTDIDEEDYALKPMNCPGCSLIYKHHL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  F +     R EL     G+ R R F   D++ +    E  +     +    
Sbjct: 349 HSYRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIY-APLEHLESEVTDIIDFT 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ + G         + P       E    A     Q    K         E   +  
Sbjct: 408 FTVYKKFGFSEFKTFIATRPEKSQGRDEDWEFATNTLKQSLEKKGIPYGIKEGEGAFYGP 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I  N                            K    R  + G I      +S+P    
Sbjct: 468 KIEFN---------------------------IKDSIGRLWQCGTI---QVDFSMPERFE 497

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +  +DG K   V +     G++     ++   ++GK  +W   ++P +I ++ I    
Sbjct: 498 LDYTDSDGQKKRPVMIHRAIYGSLERFIGILIEHYEGKFPLW---ISPNQIRILTIT--- 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +  + +Y  L   G  V  D   E+IG++   + L      +I+G K +    + +
Sbjct: 552 EKVAEYAKDVYCELVDAGFRVELDTRNEKIGAKIRDSILKKANYLLILGEKEMESGTLAV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + R     + ++    I+       +
Sbjct: 612 RKRGQEDTKTLTRSGFISNLQDEIKS 637


>gi|332358962|gb|EGJ36783.1| threonine--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 647

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    +S++E +       ++ 
Sbjct: 617 RYGQKETHTISVDEFVEQILADIASK 642


>gi|327402300|ref|YP_004343138.1| Ser-tRNA(Thr) hydrolase [Fluviicola taffensis DSM 16823]
 gi|327317808|gb|AEA42300.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Fluviicola
           taffensis DSM 16823]
          Length = 647

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 164/452 (36%), Gaps = 46/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T    +  +G+  WLP G    + +   +++ Q 
Sbjct: 228 LTEYLERVEEAKRRDHRKVGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQR 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P + + +L+V SG Y+ YG +  +       D+  +  P +     +I++S
Sbjct: 287 KAGYEQVITPHIGNKELYVTSGHYEKYGADSFQAIKTPDPDEEFLLKPMNCPHHCEIYKS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F  T +  K  + K+  
Sbjct: 347 KPRSYKDLPARFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTQDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L IF  L  ++   +                                  P        
Sbjct: 406 LVLYIFKTLDFQNFKAQISLRD-----------------------------PENPSKYIG 436

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSL 296
            D     +      A          E    +    K        +G  +  GT    Y+L
Sbjct: 437 SDENWEKAESAIIEAAAEKNLPTVVELGEAAFYGPKLDFMVQDALGREWQLGTIQVDYNL 496

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      + GAD + H  V +     G+M    AV+     G   +W   +A  +++++ 
Sbjct: 497 PERFELEYTGADNQKHRPVMIHRAPFGSMERFVAVLLEHCGGDFPLW---LATDQVAILP 553

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        +  + +   L+      F DD  E+IG +   A+L   P  ++VG K   +
Sbjct: 554 I---SDKYNEYAKDVLELLNNSDIRGFVDDRNEKIGKKIREAELKKIPFMLVVGEKEAEE 610

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +V ++ R  G +  MS++      +      
Sbjct: 611 KQVSVRQRGEGDKGSMSIDAFAAIVNQAIEKE 642


>gi|302391179|ref|YP_003826999.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203256|gb|ADL11934.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Acetohalobium
           arabaticum DSM 5501]
          Length = 639

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 153/445 (34%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      KL L +  +H   KG   + P G    + +    +EE  
Sbjct: 233 LEEHLDRLEEAKKRDHRKLGQKLDLFS--LHDEGKGFPFFHPKGMVVRNELIDFWKEEHR 290

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + + DLW +SG +D Y ++M    + + +     P +      +++  +
Sbjct: 291 QAGYKEIKTPVILNQDLWKQSGHWDHYKEDMY-FTEIDKEPHAVKPMNCPGGILVYKDKM 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++ L  R E      G+MR R F   DA+ F L P   +     +    
Sbjct: 350 RSYRDLPIRMGELGLVHRHERSGTLHGLMRVRNFTQDDAHIFCL-PSQIEEELTGVIKLV 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI+   G     +   + P     S E    A     +   + D        +   +  
Sbjct: 409 DRIYAPFGFNYR-VELSTKPDKAMGSDELWDKATDALREAIEANDLDYKVNEGDGAFYGP 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                               +    R  + G +     +       T
Sbjct: 468 KIDF---------------------------HLEDCLGRTWQCGTV-QLDFQMPERFDLT 499

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG++H  V +     G++     ++   + G    W   +AP +  +I +      
Sbjct: 500 YVGQDGEEHRPVMIHRAIFGSLERFMGILIEHYAGAFPTW---LAPIQTEVIPVTDD--- 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L+  G  V  D   E++G +   A +   P  +IVG   + D  V ++ 
Sbjct: 554 HLDYAYQVKEELADAGVRVEVDARQEKVGYKIREAQVQQVPYMLIVGDDEIEDKTVSVRD 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G      L E          N 
Sbjct: 614 RREGDLGAKDLAEFKAEIVKEIENR 638


>gi|229161333|ref|ZP_04289318.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228622147|gb|EEK78988.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 639

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 160/446 (35%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +R  Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLRGIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + +LW +SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALANVLHSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +     V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVSNV--V 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++ 
Sbjct: 554 HEQYANEVVDKLAQAGIRVEQDMRDEKLGYKIREAQMQKVPYVLVIGDKEMESKAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L+  +        N +
Sbjct: 614 YSEEQSEVIELDGFMESVKEEIKNKK 639


>gi|294626197|ref|ZP_06704803.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599549|gb|EFF43680.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 634

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 143/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YIMRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P            A++               +P E   +   I 
Sbjct: 408 YTAFGFDDIQIKIALRPEKRLGDDATWDKAESALRSALGVCGVEWQELPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 L D++    ++    ++       G        A +  
Sbjct: 468 Y--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   +AP ++ + NI        +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSW---LAPVQVVVANIT---DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     +   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTMQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|224499783|ref|ZP_03668132.1| threonyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 640

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 172/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ +I + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMEIIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|56421254|ref|YP_148572.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297529120|ref|YP_003670395.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|73919792|sp|Q5KWD2|SYT_GEOKA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56381096|dbj|BAD77004.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297252372|gb|ADI25818.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 652

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 175/446 (39%), Gaps = 34/446 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    Q  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRLLEEAKERDHRKLGKELELFT-TSQQVGQGLPLWLPKGATIRRIIERYIVDKEVALG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + SY
Sbjct: 293 YDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G++    R                  D  + + +   D M         +  D + 
Sbjct: 412 YKDFGIEEYSFRLSYR--------------DPHDKEKYYDDDEMWEKAQRMLREAMDELG 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+    +     A      + ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 458 LD--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYIG 507

Query: 305 ADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    +   D
Sbjct: 508 EDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVKVIPVSP--EAHLD 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L + G  V  D+  E+IG +   A +   P  ++VG K VS+  V ++    
Sbjct: 563 YAYDVQRTLKERGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEVSERAVNVRRYGE 622

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
                M L+E +   +      R  L
Sbjct: 623 KESRTMGLDEFMALLADDVREKRTRL 648


>gi|324991486|gb|EGC23419.1| threonine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 647

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       ++ 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIASK 642


>gi|121535635|ref|ZP_01667441.1| threonyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305805|gb|EAX46741.1| threonyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 513

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 145/442 (32%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  I     G   + P G    + +    R+   + G
Sbjct: 108 YLRMLEEAAKRDHRKLGRELDLFS--IQDEGPGFPFFHPKGMVIRNELENFWRKLHVKYG 165

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D Y + M      + +     P +      ++R+   SY
Sbjct: 166 YQEIKTPIILHQRLWQQSGHWDHYRENMY-FTTIDGEGYAVKPMNCPGGILVYRTQHHSY 224

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +   +  +
Sbjct: 225 RDLPLRTCELGLVHRHELSGALHGLMRVRSFTQDDAHIFML-PSQIKDEIQGVIDLFNEV 283

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E   +A     +    +         +   +   I 
Sbjct: 284 YSTFGLTY-HAELSTKPEKAMGSDEIWEVATNALREALEERGMPYKINEGDGAFYGPKID 342

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G I             T+ G
Sbjct: 343 F---------------------------HLRDSIGRTWQCGTI-QLDMLMPEKFDLTYVG 374

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++   + G    W   +AP ++ ++ I         
Sbjct: 375 EDGQKHRPVMIHRVAYGSLERFIGILIEHYAGAFPTW---LAPVQVKILPIT---DRHVA 428

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   +      V  D   E+IG +     L   P  +IVG K      V ++ R  
Sbjct: 429 YAQEVATLMRSKDIRVEVDSRNEKIGYKIREGQLEKVPYMLIVGDKETETRTVAVRKRGQ 488

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     ++++ +          
Sbjct: 489 GDIGAQAVDDFVAAILAEIQGK 510


>gi|299535482|ref|ZP_07048804.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
 gi|298729243|gb|EFI69796.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
          Length = 643

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 179/443 (40%), Gaps = 34/443 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFT-TSQKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYRNLP    ++    R E+     G+ R R   + DA+ F + P+  K  + K+    L
Sbjct: 351 SYRNLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIF-VRPDQIKAEFQKVVQLIL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    L     R                  D  +T+ +   D M     S   +  D 
Sbjct: 410 EVYKDFDLHDYSFRLSYR--------------DPADTEKYFDDDAMWEKAQSMLKEAMDE 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + L+    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 456 LGLD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +   ++  
Sbjct: 506 VGEDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVEVIPVS--NEAH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V  + V ++  
Sbjct: 561 FDYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEANGVNVRRY 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            +   E +S E+ ++      + 
Sbjct: 621 GSKDSETISFEDFLSTIKTEITK 643


>gi|284801950|ref|YP_003413815.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995092|ref|YP_003416860.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|284057512|gb|ADB68453.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060559|gb|ADB71498.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
          Length = 640

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 172/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ L  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ +I + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMEIIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|254282289|ref|ZP_04957257.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219678492|gb|EED34841.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 643

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 153/447 (34%), Gaps = 50/447 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD    + KL L    + + + G+  W P G      +   +RE+Q   G
Sbjct: 231 YLNRIAEAEKRDHRKIAKKLGLF--HLQEEAPGMVFWHPAGWVIYQTIERYMREQQLAYG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG  D +   M  L   +++     P +      +F   +KSY
Sbjct: 289 YEEIKTPQLVDYSLWQRSGHADKFADGMFMLKS-DERDFAVKPMNCPCHIQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T +  +            +
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFVQDDAHIF-CTEDQIQGEVGDFIDMLHDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   +  R  + P     S      A+    +   +K      +P E   +   I 
Sbjct: 407 YADFGFSEVIYRLSTRPEQRVGSDADWDRAEAALAKALDAKSLPWEELPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MS 299
            +                                     +G ++  GT    +S+P  + 
Sbjct: 467 FSLKDC---------------------------------IGRVWQLGTIQVDFSMPGRLD 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG +   V +    +G+      ++    +G+   W   ++P +  ++NI    
Sbjct: 494 AQYVAEDGSRKVPVMLHRAVLGSFERFIGILIEHFEGEFPTW---LSPQQAVIVNITDK- 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D    +   L   G     D   E+IG +    ++   P  ++VG + V  + V +
Sbjct: 550 --HADYALSVQETLKNNGFRAVCDLRNEKIGFKIRELEMKKTPYIIVVGDQEVESATVSV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M L+ ++   +      
Sbjct: 608 RARHGRDLGSMDLDSLVTTLTDDVGRR 634


>gi|327490276|gb|EGF22064.1| threonine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 647

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYYDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQMAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       +N 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIANK 642


>gi|94971761|ref|YP_593809.1| threonyl-tRNA synthetase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553811|gb|ABF43735.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 659

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 158/450 (35%), Gaps = 36/450 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQ 61
             +YF  + +   RD  +   +L L +  I + +  G+  W P G      +   +REE 
Sbjct: 242 MDEYFAKLEEAKKRDHRVLGKQLDLFS--IQELAGPGLIFWHPKGGIIRKEMEDWMREEY 299

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P +   DLW  SG    Y +      + +D   +  P +      I+R  
Sbjct: 300 LKRGYSLVVTPHVARTDLWKISGHTGYYKQNFFTPMELDDAEYMLKPMNCPGHVLIYRDQ 359

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    ++   +R E      G++R R F   DA+ F  TP   +   +     
Sbjct: 360 LRSYRDLPMRLGEMGTVYRYERSGVMHGLLRVRGFTQDDAHIF-CTPSQIEDEISGCIDF 418

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + + H  G     +                   D  + + F   D              
Sbjct: 419 AISVLHTYGFNEFKVELS--------------EWDPNDRKSFIGTDEQWNLAQGSLKKVL 464

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   +    +      A      + KL D++    ++S    +    F    ++      
Sbjct: 465 DARGI--PYKSMPGEAAFYGPKIDVKLVDAIGRLWQLSTVQFD----FTLPQRF----EL 514

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DGK H  + +     G++     V+   + G   +W   ++P +  L+ I    +
Sbjct: 515 EYVGEDGKRHQPLMVHRALYGSIERFFGVLIEHYAGAFPVW---LSPVQTVLVPIG---E 568

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+   L   G  V  D   E++ ++     L   P  ++VG K    + V ++
Sbjct: 569 KHLEYANKVGDVLKAKGIRVEVDGRNEKMNAKIREHALQKVPFILVVGDKEAEATSVNVR 628

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            R     E + L+  +       +  +P L
Sbjct: 629 TRGKDKTETVPLDSFVERIEKLIAEKKPTL 658


>gi|325279133|ref|YP_004251675.1| threonyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324310942|gb|ADY31495.1| threonyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 650

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 93/460 (20%), Positives = 175/460 (38%), Gaps = 54/460 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++ + + +   RD      ++ L T        G+  WLP G    D +   +R+ Q 
Sbjct: 229 LDEWLVLMEEAKQRDHRKIGKEMELFT-FSQAVGAGLPMWLPKGAMLRDRLEGFLRKVQK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P + + +L+  SG Y  YGK+  ++    +  +  +  P +     +I++ 
Sbjct: 288 KYGYQQVITPHIGNVNLYKTSGHYQKYGKDSFQVITTPQEGEEFMLKPMNCPHHCEIYKF 347

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F  TP+  K  + K+  
Sbjct: 348 KPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CTPDQLKEEFKKVID 406

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               IF  L  K    +            IG D + E    A     +    K  ++   
Sbjct: 407 IIFTIFKALDFKDFTAQVSLRDPKNTEKYIGTDENWEKAERAIIEAAEEKGLKTTVELGE 466

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      D +  ++I                               R  ++G I     
Sbjct: 467 AAFYGPKLDFMVKDAIG------------------------------RKWQLGTI---QV 493

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            Y+LP      + GAD  K   V +     G+M    AV+     GK  +W   +AP ++
Sbjct: 494 DYNLPERFDLEYTGADNLKHRPVMIHRAPFGSMERFVAVLIEHTGGKFPLW---LAPDQV 550

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ I    +   D  +K+   L+        DD  E+IG +    +L   P  +IVG  
Sbjct: 551 VVMPI---SEKFNDYAQKLSDLLNNSDIRTVLDDRNEKIGRKIRDNELKKIPYLLIVGEN 607

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            ++++ V ++ +  G    MS+E+ I+  +   ++    +
Sbjct: 608 EMNNNTVSVRRQGQGDMGTMSVEDFISKINEEVNSQLQTI 647


>gi|322374759|ref|ZP_08049273.1| threonine--tRNA ligase [Streptococcus sp. C300]
 gi|321280259|gb|EFX57298.1| threonine--tRNA ligase [Streptococcus sp. C300]
          Length = 647

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 176/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + + +++ +       +N 
Sbjct: 617 RYGQKETQTVPVDKFVAAILADIANK 642


>gi|306825714|ref|ZP_07459053.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432075|gb|EFM35052.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 647

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEEEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPEDKHKYFDNDEMWENAQRMLKAAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMELD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + + ++E +       +N 
Sbjct: 617 RYGQKETQTVPVDEFVAAILADIANK 642


>gi|16803599|ref|NP_465084.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501501|ref|ZP_03669808.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|22654119|sp|Q8Y6X2|SYT_LISMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16410988|emb|CAC99637.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 640

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 172/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ +I + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMEIIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|295399484|ref|ZP_06809466.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109958|ref|YP_003988274.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978950|gb|EFG54546.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215059|gb|ADP73663.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 644

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 170/442 (38%), Gaps = 34/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  LQE   RD      +L L      +  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRQLQEAKERDHRKLGKELELFM-TSQKVGQGLPLWLPKGATVRRIIERYIVDKEIELG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I+++ I SY
Sbjct: 293 YQHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEQLVLRPMNCPHHMMIYKNKIHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL     R                  D  + + +   D M     S   +  D + 
Sbjct: 412 YKDFGLDEYSFRLSYR--------------DPHDKEKYYDDDEMWEKAQSMLREAMDELG 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                 +     A      + ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 458 --LEYYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYIG 507

Query: 305 ADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    +   D
Sbjct: 508 EDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVEVIPVSP--EAHLD 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G  V  D   E+IG +   A +   P  ++VG K ++++ V ++    
Sbjct: 563 YAYKVKETLQSQGFRVEVDGRDEKIGYKIREAQIQKIPYMLVVGDKEMAENAVNVRKYGE 622

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E M+L + I         N
Sbjct: 623 QKSETMALADFIAALKAEVRRN 644


>gi|228939521|ref|ZP_04102109.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972374|ref|ZP_04132985.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978988|ref|ZP_04139352.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228780699|gb|EEM28913.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228787391|gb|EEM35359.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820221|gb|EEM66258.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326940068|gb|AEA15964.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 640

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 165/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W +SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWEKSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEITLKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVVALDVFVASIEEEIKNRK 639


>gi|193661987|ref|XP_001946406.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 433

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 142/426 (33%), Positives = 215/426 (50%), Gaps = 32/426 (7%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           S KLML  G+I Q + G+Y  LPL Q++LD +  II +     GA ++S+P L  ++LW 
Sbjct: 29  SQKLMLELGIIRQSANGLYHLLPLAQRSLDKLIFIINKNMMDIGAQKISMPVLIHSNLWK 88

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           ++GR +   +++  + DR  K  +  PTHEEV+TD+F S  K+Y+ LP   YQ+  KFRD
Sbjct: 89  KTGRLNKNIEDLYLVNDRKSKEFLLSPTHEEVVTDLFSSDPKTYKQLPLMLYQVGTKFRD 148

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RP+ G++RS+EFLMKD YSFD     +  +YNK+  +Y +IF  +G+K I +   SG 
Sbjct: 149 EIRPKLGIIRSKEFLMKDLYSFDRDQTSATFTYNKVCQAYEKIFKHIGVKFIRVEGASGM 208

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +GG+ SHEF   A+ G+  +   K          + +       +S   ++T        
Sbjct: 209 MGGNQSHEFHYPAEVGDDTLLQCKKCGFGMNKEMSPESVQCPKCSSTDIEFT-------- 260

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                             + IEVGH F+ GT YS  +SAT+   DG      M SYG+G 
Sbjct: 261 ------------------KAIEVGHTFHLGTFYSSALSATYSDTDGTMKPPYMCSYGLGV 302

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCRDACEKIYARLSKV-GC 377
            R++ A +E       I WP S++PF I +I  K     +    +    +Y   +++ G 
Sbjct: 303 SRIIGASVECLSTQDVIQWPRSISPFTICIIPAKEGSIEENASLNNVHSLYNHFTEIFGD 362

Query: 378 DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVI 435
           D+  DD     IG +   A  LGFP  V++G K      + E+    T   E   L  +I
Sbjct: 363 DIIVDDRTHMTIGKRLIEAKKLGFPFVVVMGKKMNETPSLYELYEANTNKSEHYELSNLI 422

Query: 436 NYASHR 441
           NY   +
Sbjct: 423 NYLKQQ 428


>gi|328946743|gb|EGG40881.1| threonine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 647

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       ++ 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIASK 642


>gi|257784431|ref|YP_003179648.1| threonyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472938|gb|ACV51057.1| threonyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 588

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 158/447 (35%), Gaps = 52/447 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +++E    AE   H+ + R     M+     G   WLP G    + +     E Q R
Sbjct: 184 YLKMIEE----AEKRDHRKIGREMELFMMSDFGPGSPFWLPNGMALRNALTEYWHEMQAR 239

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S  LW  SG +D Y + M      +++     P +      I++S  +
Sbjct: 240 FGYQEVQTPLILSRSLWETSGHWDHYKENMYTTTV-DEEDFAIKPMNCPGACLIYKSKPR 298

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  L  R E++    G+ R REF   DA+ F + P+              
Sbjct: 299 SYRDLPMKLAEAGLDHRYEMKGALHGLFRVREFTQDDAHLF-IRPDQITEQVTDASHLIT 357

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             + + G     +   + P     S E    A+ G      +          +   +   
Sbjct: 358 AYYAQFGFPYR-VELSTRPEDSMGSDEDWERAEQGLRDALDAMGIDYVVNEGDGAFYGPK 416

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                                 R  + G I      + LP     
Sbjct: 417 IDFHLTD---------------------------CLGRSWQCGTI---QLDFQLPHNFQL 446

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +DG K   + +   G G+      ++  +++GK  +W   ++P ++ ++ +    +
Sbjct: 447 EYIDSDGTKKQPIMIHRAGFGSFERFIGILTENYEGKFPVW---LSPCQVKILPV---SE 500

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
             R    ++  +L+  G  V  DD  E+IG +   A  L   P  +I+G + V    + +
Sbjct: 501 KSRSYAHEVADKLAAAGIRVKVDDRDEKIGYKIREARSLDRVPYMLILGEQEVEAGNISV 560

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R         L+E I       S  
Sbjct: 561 RDRSN-ETHAAELDEFIAQVVKENSER 586


>gi|304415438|ref|ZP_07396087.1| threonyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304282702|gb|EFL91216.1| threonyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 652

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 148/454 (32%), Gaps = 54/454 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      + + +R +     
Sbjct: 232 YLQKIEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHHNGWTIFRELESFVRAKLQEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPLMMDRLLWAKTGHWENYAENMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNESSGALHGLMRVRAFTQDDAHIF-CTEQQVRAEVNNCIAMIYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                 P E   +   I 
Sbjct: 408 YRVFGFEKIEVKLSTRPEKRIGSDEIWTAAENDLAAALTENGIAFDWQPGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  + A++
Sbjct: 468 FTL---------------------------HDCLDRAWQCGTV---QLDFSLPGRLGASY 497

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G++     ++   + G    W   +AP +  +INI       
Sbjct: 498 IDENSQRTVPVMIHRAILGSIERFIGILIEEYAGCFPTW---LAPVQAVVINITDK---H 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKH 420
            D  +KI   L   G  V  D   E++G +     L   P  ++ G K V    KV ++ 
Sbjct: 552 VDYAKKISTALQHAGIRVKTDLRNEKVGLKIREHTLRRVPYMLVCGDKEVESGNKVSVRT 611

Query: 421 RLT---------GIREDMSLEEVINYASHRFSNN 445
             T                L+ ++        N 
Sbjct: 612 LGTRTRSGAYHSKDLGSCDLDVILERLLTEIGNR 645


>gi|190575251|ref|YP_001973096.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|229558456|sp|B2FN79|SYT_STRMK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190013173|emb|CAQ46806.1| putative threonyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 633

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 152/445 (34%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ + ++  ++E    AE+  H+ + +      + + + G+  W P G      V   +R
Sbjct: 227 KQLEAYIKRIEE----AEMRDHRRIGKQQDLFHLQEEAPGLVFWHPKGWALWQVVEQYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +    +G  E+  P +    LW +SG +D+Y   M    +   +     P +      +F
Sbjct: 283 KVYRNSGYGEVRCPQILDVSLWKKSGHWDNYQDNMF-FTESEKRTYAVKPMNCPGHIQVF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              + SYR+LP  + +     R+E      G++R R F   D + F  T    +      
Sbjct: 342 NQGLHSYRDLPIRYGEFGSCHRNEPSGALHGILRVRGFTQDDGHVF-CTENQIESEVTAF 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I ++    P            A+        +       +P E  
Sbjct: 401 HQQALAVYQHFGFDEIQIKIALRPESRLGDDATWDKAEGALRSALTACGVEWQELPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L D++    ++    ++       G      
Sbjct: 461 FYGPKIEY--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG------ 494

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   +  K H V +    +G+M     ++   H G+   W   +AP ++ + NI  
Sbjct: 495 --AEYVDENSQKKHPVMLHRAIVGSMERFLGILIEHHAGQFPAW---LAPTQVVVANIT- 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D    +   L++ G  V  D   E+IG +     L   P  +++G +   +  V
Sbjct: 549 --DAQADYVSGVTKTLAEQGFRVSSDLRNEKIGYKIREHTLQRVPYLLVIGDREKENGAV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ R       MSL+  I      
Sbjct: 607 AVRTRSGEDLGSMSLQAFIERLHAE 631


>gi|154687027|ref|YP_001422188.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166223321|sp|A7Z7I1|SYT_BACA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154352878|gb|ABS74957.1| ThrS [Bacillus amyloliquefaciens FZB42]
          Length = 643

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 167/440 (37%), Gaps = 34/440 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L      +  +G+  WLP G      +   I +++  
Sbjct: 232 KEHLRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S DL+  SG +D Y   M    + +++ ++  P +      I++  I 
Sbjct: 291 LGYEHVYTPVLGSKDLYETSGHWDHYQDTMFPPMEMDNETLVLRPMNCPHHMMIYKQDIH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +      
Sbjct: 351 SYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEEFIRTVRLIQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   GL     R                  D  +T+ +   D M     S      D 
Sbjct: 410 DVYEDFGLNDYTFRLSYR--------------DPEDTEKYFDDDEMWNKAQSMLKAAMDE 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +  +    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 456 MGHD--YYEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   H G    W   +AP +  +I +     V 
Sbjct: 506 VGEDGKQHRPVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--SVH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++  
Sbjct: 561 LDYAKKVQERLQREGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKY 620

Query: 422 LTGIREDMSLEEVINYASHR 441
                E +SL++ +  A   
Sbjct: 621 GEQKSETVSLDDFVKKAVAE 640


>gi|328912917|gb|AEB64513.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 653

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 167/440 (37%), Gaps = 34/440 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L      +  +G+  WLP G      +   I +++  
Sbjct: 242 KEHLRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELS 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S DL+  SG ++ Y   M    + +++ ++  P +      I++  I 
Sbjct: 301 LGYEHVYTPVLGSKDLYETSGHWEHYQDGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIH 360

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +      
Sbjct: 361 SYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEEFIRTVRLIQ 419

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   GL     R                  D  +T+ +   D M     S      D 
Sbjct: 420 DVYEDFGLSDYTFRLSYR--------------DPEDTEKYFDDDDMWNKAQSMLKAAMDE 465

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I  +    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 466 IGHD--YYEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 515

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   H G    W   +AP +  +I +     V 
Sbjct: 516 VGEDGKQHRPVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--SVH 570

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++  
Sbjct: 571 LDYAKKVQERLQREGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKY 630

Query: 422 LTGIREDMSLEEVINYASHR 441
                E +SL++ +  A   
Sbjct: 631 GEQKSETVSLDDFVKKAVAE 650


>gi|332367135|gb|EGJ44871.1| threonine--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 647

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       ++ 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIASK 642


>gi|332358692|gb|EGJ36515.1| threonine--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 647

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       ++ 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIASK 642


>gi|139437031|ref|ZP_01771191.1| Hypothetical protein COLAER_00165 [Collinsella aerofaciens ATCC
           25986]
 gi|133776678|gb|EBA40498.1| Hypothetical protein COLAER_00165 [Collinsella aerofaciens ATCC
           25986]
          Length = 611

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 162/442 (36%), Gaps = 44/442 (9%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + +L+E   RD      ++ L   M+   + G   +LP G    + +    RE  ++ G 
Sbjct: 209 MHMLEEAKKRDHRKIGREMDLF--MMRDEAPGFPFFLPNGMILKNTLLDYWREIHHKAGY 266

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+S P + +  LW  SG +D Y   M      +D+     P +      ++ S   SYR
Sbjct: 267 VEISTPLIMNKQLWKTSGHWDHYKDNMYS-TVIDDEEYCIKPMNCPGGVLVYASKPHSYR 325

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +I L  R ELR    G+ R R F   DA+ F + P+        +      ++
Sbjct: 326 ELPIRAGEIGLVHRHELRGALHGLFRVRCFNQDDAHLF-VRPDQLTDEIVGVVNLIDSVY 384

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            + G K   +   + P     S E    A+ G       +  MD+ +   +  F      
Sbjct: 385 QKFGFKY-HVELSTRPEDSMGSDEDWARAEEGLRTAL-EQLHMDYEVNEGDGAF------ 436

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                     Y    D H E              R  + G +     +  L     +  A
Sbjct: 437 ----------YGPKIDFHLEDSLG----------RTWQCGTV-QLDFQMPLNFDLEYVDA 475

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG K   + +     G++     ++     GK   W   +AP ++  + +    +  RD 
Sbjct: 476 DGTKKRPIMLHRVCFGSIERFIGILIEHFAGKFPTW---LAPVQVKALPV---SEKSRDY 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++ A+L + G  V  DD  E+IG +   A  +   P  +I+G K V    + ++ R  
Sbjct: 530 AHEVCAKLEEAGIRVVCDDRDEKIGYKIREARSIDRVPYMLILGEKEVEAGNISVRDRSN 589

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++E +          
Sbjct: 590 -ETVQMSVDEFVAKVLEEIKTR 610


>gi|170717553|ref|YP_001784641.1| threonyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083611|sp|B0UU42|SYT_HAES2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|168825682|gb|ACA31053.1| threonyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 642

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 145/448 (32%), Gaps = 44/448 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLHRLEEAAKRDHRKIGKALNLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G + +Y   M      N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P            A+ G                 E   +   I 
Sbjct: 408 YSTFGFTDIFVKLSTRPEKRIGEDVMWDRAEQGLANALKHNGLEYEIQEGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G I      ++LP  + AT+
Sbjct: 468 FAL---------------------------RDCLDREWQCGTI---QLDFALPGRLDATY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G++     +I   + G    W   +AP +  ++NI       
Sbjct: 498 VAEDNARRTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPIQAVVMNIT---DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+  + S+ G  V  D   E++G +     L   P  ++ G K + ++K+ ++ R
Sbjct: 552 ADYVQKVVKQFSEAGLRVKADIRNEKVGFKIREHTLRRVPYMLVCGDKEIVENKIAVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                   S+EE +     +       L
Sbjct: 612 KGTDLGTFSVEEFVEILKQQVRKRELTL 639


>gi|319783887|ref|YP_004143363.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169775|gb|ADV13313.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 658

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 157/451 (34%), Gaps = 47/451 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + + +  +L+E    AE   H+ + R        +   G+  W   G K   N+   +R 
Sbjct: 231 QLEAYQTMLEE----AEKRDHRKIGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVNYMRR 286

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVM 114
             +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +    
Sbjct: 287 RLDEQGYQEVNAPQVLDKSLWETSGHWGWYRDAMFKVTVAGDDTDDDRVFALKPMNCPGH 346

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E     
Sbjct: 347 VQIFKHGLKSYRDLPVKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQLAAE 405

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
             ++    L  +   G   I ++  + P     + E    A+                I 
Sbjct: 406 CLRINDLILSTYADFGFDEISVKLSTRPDKRVGTDEAWDHAE---------------AIM 450

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
               +     S N I         A      E +       K    R  + G        
Sbjct: 451 GGVLETIRTRSGNRIKTSINPGEGAFYGPKFEYVL------KDAIGREWQCGTT---QVD 501

Query: 294 YSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           ++LP    A + G+D  K   V +     G+M     ++  ++ G   +W    AP ++ 
Sbjct: 502 FNLPERFGAFYIGSDSEKKQPVMVHRAICGSMERFLGILIENYSGHFPLW---FAPLQVV 558

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  I +      D   ++ A+L   G     D   E+I  +     L   P+ ++ G + 
Sbjct: 559 VATITSD---ADDYATEVVAKLKAAGLLAEADLRNEKINYKVREHSLAKVPVILVCGKRE 615

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +  V ++   +  +E + L++ I   +  
Sbjct: 616 AEEQTVNMRRLGSRDQESLGLDQAIAQLTEE 646


>gi|301053905|ref|YP_003792116.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300376074|gb|ADK04978.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 639

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 162/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + +   +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEVFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       E    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLTQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                   + L+  +       +N +
Sbjct: 614 YGEEKSGVIELDMFVESMKEEINNRK 639


>gi|308067332|ref|YP_003868937.1| Threonyl-tRNA synthetase 2 (threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
 gi|305856611|gb|ADM68399.1| Threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
          Length = 637

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 151/442 (34%), Gaps = 42/442 (9%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP G      +    R+ Q   G 
Sbjct: 235 LHLLEEAKKRDHRKLGKELELF--MFSEEAPGMPFYLPKGMVVRTALEDYSRDIQRLHGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG Y+ Y + M   ++ ++      P +      +F++ + SYR
Sbjct: 293 EEVRTPLMMNNRLWEQSGHYEHYKENMY-FSEVDETTFALKPMNCPGHMLVFKNELHSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R EL     G+MR R F   DA+ F +TP   +     +      ++
Sbjct: 352 DLPIRIAEFGQVHRHELSGALNGMMRVRTFCQDDAHIF-VTPGQIEQEITDVIKLINEMY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     +   + P                           D    +     D +   
Sbjct: 411 SVFGFDF-TVELSTRP-----------------DDFMGEPALWDQAEQALQNVLDHLGIN 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I     A Y    D H                R  + G I     +       T+ G 
Sbjct: 453 YRINAGDGAFYGPKIDFHILDAL----------KRSWQCGTI-QLDFQMPEKFDLTYVGE 501

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H  V +     G++     ++     G   +W   +AP    L+ +    +   + 
Sbjct: 502 DNQKHRPVVIHRAIYGSIDRFMGILTEHFTGAFPLW---LAPVHAKLLPV---SENYIET 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I   L K G  V  D   E++G +   A L   P   ++G    +   V ++ R  G
Sbjct: 556 ANEIQDALLKAGLRVEVDTRNEKLGYKIREAQLEKVPYMFVIGENEKTTGTVAVRKRGEG 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               +S+ +++   S      +
Sbjct: 616 DLGSLSIADIVEKISTEIREKQ 637


>gi|221194423|ref|ZP_03567480.1| threonyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185327|gb|EEE17717.1| threonyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 588

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 159/446 (35%), Gaps = 52/446 (11%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L +L+E    AE   H+ + R     M+     G   WLP G    + +     E   + 
Sbjct: 185 LKMLEE----AEKRDHRKIGREMELFMMSDFGPGSPFWLPNGMAVRNALTDYWHEMMVKF 240

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + S  LW  SG +D Y + M   +  +++     P +      I+++  +S
Sbjct: 241 NYEEVLTPQILSRSLWETSGHWDHYKENMYTTSV-DEEDFAIKPMNCPGACLIYKNRPRS 299

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +  L  R E++    G+ R REF   DA+ F + P+               
Sbjct: 300 YRDLPLKLAEAGLDHRYEMKGALHGLFRVREFTQDDAHIF-IRPDQITEQVADASHLITA 358

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + + G     +   + P     S E    A+ G      S   +D+ +   +  F    
Sbjct: 359 YYAQFGFPYR-VELSTRPENSMGSDEDWERAEQGLKDALES-MGIDYVLNEGDGAF---- 412

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
                       Y    D H                R  + G I      + LP      
Sbjct: 413 ------------YGPKIDFHLTDCLG----------RSWQCGTI---QLDFQLPHNFELE 447

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +DG K   + +   G G+      ++   ++GK  +W   +AP ++ ++ +    + 
Sbjct: 448 YVDSDGTKKQPIMIHRAGFGSFDRFIGILTEHYEGKFPVW---LAPCQVKVLPV---SEK 501

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIK 419
            R+   ++   L   G  V  D+  E+IG +   A  L   P  +I+G K V    + ++
Sbjct: 502 SREYAHEVAGALQAAGIRVKVDNRDEKIGYKIREARSLDRVPYMLIIGEKEVEAHNISVR 561

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R        +L+  I   S      
Sbjct: 562 DRSN-ETVQSTLDAFIAKVSKENDER 586


>gi|308174589|ref|YP_003921294.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607453|emb|CBI43824.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328554512|gb|AEB25004.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 643

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 167/440 (37%), Gaps = 34/440 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L      +  +G+  WLP G      +   I +++  
Sbjct: 232 KEHLRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S DL+  SG ++ Y   M    + +++ ++  P +      I++  I 
Sbjct: 291 LGYEHVYTPVLGSKDLYETSGHWEHYQDGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +      
Sbjct: 351 SYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEEFIRTVRLIQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   GL     R                  D  +T+ +   D M     S      D 
Sbjct: 410 DVYEDFGLSDYTFRLSYR--------------DPEDTEKYFDDDDMWNKAQSMLKAAMDE 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I  +    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 456 IGHD--YYEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   H G    W   +AP +  +I +     V 
Sbjct: 506 VGEDGKQHRPVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--SVH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++  
Sbjct: 561 LDYAKKVQERLQREGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKY 620

Query: 422 LTGIREDMSLEEVINYASHR 441
                E +SL++ +  A   
Sbjct: 621 GEQKSETVSLDDFVKKAVAE 640


>gi|319408458|emb|CBI82113.1| Threonyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 659

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 161/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + R        + S G+  W P G K   N+ + +R   
Sbjct: 233 KAYLHTLEE----AEKRDHRRLGREMDLFHFQEESPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKA-MIYGPTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M +      D +D+      P +      
Sbjct: 289 DDHKYDEVNAPQVLDKSLWEISGHWGWYKENMFQTTPAADDWDDQCIYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGIVHRYEPSGSLHGLMRVRSFTQDDAHIF-CTDEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G + I ++  + P     S E   L D  E  +      ++      
Sbjct: 408 NINDLILSTYADFGFEEISLKFSTRPEKRVGSDE---LWDHCEDIMLSVLKTIEKKSEG- 463

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                       I         A      E         K    R  + G        ++
Sbjct: 464 -----------RIKTSILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 503

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +    +G+M     ++  +  G   +W   +AP ++ + 
Sbjct: 504 LPERFGAFYIDKDSEKRQPVMIHRAILGSMERFLGILIENFSGHMPLW---LAPQQVVVA 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  EKI  +L  +G     D   E+I  +     L   P+ ++ G +   
Sbjct: 561 PITS---EANEYAEKITKKLKAIGLSATADLRNEKINYKIREHSLQKVPVILVCGKRESE 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  +S+EEV+   S+ 
Sbjct: 618 TNSVSMRRLGSTDQTVLSIEEVMKQLSNE 646


>gi|228478293|ref|ZP_04062901.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228249972|gb|EEK09242.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 648

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRVLERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +A +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPTMDMGDGEAFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F +TPE  K  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTF-VTPEQIKDEFQRTLQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPKDTHKYFDNDEMWENAQSMLKSAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DDMELD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPQQVTVIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G  V  D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 AHTDYAWEVAKQLRDRGIRVEVDERNEKMQYKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                     ++ E +       +  
Sbjct: 617 RYGQKQTHTEAVSEFVENILADIARK 642


>gi|229044114|ref|ZP_04191800.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229109806|ref|ZP_04239391.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228673651|gb|EEL28910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228725227|gb|EEL76498.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 640

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 165/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEATKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  ++    +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIENEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVATIEEEIKNRK 639


>gi|126640661|ref|YP_001083645.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 549

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 140 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 197

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 198 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 256

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E             L +
Sbjct: 257 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTKEQIGKEVADFIKLTLDV 315

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P           LA+        +        P E   +   I 
Sbjct: 316 YKDFGFEEVQMKLSTRPEKRVGDDALWDLAEKSLADALDAAGLEWELQPGEGAFYGPKIE 375

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G I      ++LP  + A++
Sbjct: 376 FSL---------------------------KDCLGRVWQCGTI---QCDFNLPVRLDASY 405

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    V +    +G+      ++   + G     P  ++P +  ++NI       
Sbjct: 406 VTEENERDQPVMLHRAILGSFERFIGILIEHYAG---FMPPWLSPVQACVMNIT---DSQ 459

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +A E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R
Sbjct: 460 AEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTR 519

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  I+      +  
Sbjct: 520 SGKNLGTMSVDAFIDLVKSAVAER 543


>gi|74317025|ref|YP_314765.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123731846|sp|Q3SK34|SYT_THIDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|74056520|gb|AAZ96960.1| threonyl-tRNA synthetase, class IIa [Thiobacillus denitrificans
           ATCC 25259]
          Length = 637

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 151/445 (33%), Gaps = 44/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD    + +L L    +   + G+  W P G      +   +RE+    G
Sbjct: 233 YLHRLEEAEKRDHRRLAKQLDLL--HMQDEAPGMVFWHPKGWIVWQQIEQYMREKFVEYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    +W +SG +++Y   M   A  N +     P +      IF S + SY
Sbjct: 291 YQEVRTPAVMDRSMWEKSGHWENYRDNMFTTASEN-RDYAVKPMNCPGHVQIFNSGLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F +  E  +       V   ++
Sbjct: 350 RDLPLRLAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFCM-EEQVEQEVADFIVMLQKV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     S E    A++                P E   +   I 
Sbjct: 409 YADFGFNDVLVKLSTRPDKRVGSDESWDKAESALAAALEKNGLSFDLQPGEGAFYGPKIE 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      ++LP  + A F
Sbjct: 469 FTL---------------------------KDTLGRLWQCGTI---QLDFNLPVRLGAEF 498

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D      V +    +G+M     ++   H G   +W   +AP ++ ++NI    +  
Sbjct: 499 VAEDNTRKIPVMLHRAILGSMERFIGILIEHHAGNFPLW---LAPVQVMVMNI---SERQ 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +   L + G     D    +I  +     L   P Q++VG K +    V ++ R
Sbjct: 553 AAYAEAVAEALRRAGIRAALDLSNNKINYKIREHSLQKLPYQLVVGDKEMEARVVAVRAR 612

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  + L+++I          +
Sbjct: 613 GNQDMGQLGLDDLIARLRAEVLARQ 637


>gi|13471046|ref|NP_102615.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|22654133|sp|Q98LR2|SYT_RHILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14021790|dbj|BAB48401.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 658

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 155/451 (34%), Gaps = 47/451 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + + +  +L+E    AE   H+ + R        +   G+  W   G K   N+   +R 
Sbjct: 231 QLEAYQTMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVNYMRR 286

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVM 114
             +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +    
Sbjct: 287 RLDEQGYQEVNAPQVLDKSLWETSGHWGWYRDAMFKVTVAGDDTDDDRVFALKPMNCPGH 346

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E     
Sbjct: 347 VQIFKHGLKSYRDLPVKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQLASE 405

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
             ++    L  +   G   I ++  + P     + E    A+                I 
Sbjct: 406 CLRINDLILSTYADFGFDEISVKLSTRPDKRVGTDEAWDHAE---------------AIM 450

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
               +     S N I         A      E +       K    R  + G        
Sbjct: 451 GSVLETIRTRSGNRIKTSINPGEGAFYGPKFEYVL------KDAIGREWQCGTT---QVD 501

Query: 294 YSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           ++LP    A + G+D  K   V +     G+M     ++  ++ G   +W    AP ++ 
Sbjct: 502 FNLPERFGAFYIGSDSEKKQPVMVHRAICGSMERFLGILIENYSGHFPLW---FAPQQVV 558

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  I +          ++ A+L   G     D   E+I  +     L   P+ ++ G + 
Sbjct: 559 VATITS---EADGYATEVVAKLKAAGLLAEADLRNEKINYKVREHSLAKVPVILVCGKRE 615

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +  V I+   +  +E + L E I   +  
Sbjct: 616 AEEQTVNIRRLGSRDQESLGLAEAIAQLTEE 646


>gi|260463880|ref|ZP_05812076.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259030255|gb|EEW31535.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 658

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 154/447 (34%), Gaps = 47/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  +L+E    AE   H+ + R        +   G+  W   G K   N+   +R   + 
Sbjct: 235 YQTMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVNYMRRRLDE 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 QGYQEVNAPQVLDKSLWETSGHWGWYRDAMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       ++
Sbjct: 351 KHGLKSYRDLPVKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQLAAECLRI 409

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G + + ++  + P     + E    A+                I     
Sbjct: 410 NDLILSTYADFGFEEVSVKLSTRPDKRVGTDEAWDHAE---------------AIMGNVL 454

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +     S N I         A      E +       K    R  + G        ++LP
Sbjct: 455 ETIRTRSGNRIKTSINPGEGAFYGPKFEYVL------KDAIGREWQCGTT---QVDFNLP 505

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A + G+D  K   V +     G+M     ++  ++ G   +W    AP ++ +  I
Sbjct: 506 ERFGAFYIGSDSEKKQPVMVHRAICGSMERFLGILIENYSGHFPLW---FAPLQVVVATI 562

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++ A+L   G     D   E+I  +     L   P+ ++ G +   + 
Sbjct: 563 TS---EADGYATEVVAKLKAAGLLAEADLRNEKINYKVREHSLAKVPVILVCGKREAEEQ 619

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V I+   +  ++ + L E I   +  
Sbjct: 620 TVNIRRLGSRDQQSLGLAEAIAQLTEE 646


>gi|229150586|ref|ZP_04278801.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228632895|gb|EEK89509.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 640

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVASIEEEIKNRK 639


>gi|324993844|gb|EGC25763.1| threonine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324994835|gb|EGC26748.1| threonine--tRNA ligase [Streptococcus sanguinis SK678]
 gi|325687276|gb|EGD29298.1| threonine--tRNA ligase [Streptococcus sanguinis SK72]
 gi|325696135|gb|EGD38026.1| threonine--tRNA ligase [Streptococcus sanguinis SK160]
 gi|327474719|gb|EGF20124.1| threonine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 647

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 172/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K   D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEAEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       ++ 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIASK 642


>gi|125718378|ref|YP_001035511.1| threonyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166225508|sp|A3CP56|SYT_STRSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125498295|gb|ABN44961.1| Threonyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 647

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--FFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    ++++E +       ++ 
Sbjct: 617 RYGQKETHTVAVDEFVEQILADIASK 642


>gi|269792334|ref|YP_003317238.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099969|gb|ACZ18956.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 631

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 154/441 (34%), Gaps = 42/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L +  I     G   + P G   L+ +    + E  R G
Sbjct: 228 YLNRLEEARQRDHRKIGREMDLFS--IQPEGPGFPFFHPKGMVILNELVDFWKREHKRRG 285

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D Y   M      +D+     P +      +F+S  +SY
Sbjct: 286 YNEIRTPLILDRSLWERSGHWDHYRDNMY-FTSIDDRPFAIKPMNCPGGILVFKSSTRSY 344

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R E      G+MR R F   DA+ +  TP+        +      +
Sbjct: 345 RDLPLRMSELGVVHRHERSGVLHGLMRVRCFTQDDAHIY-CTPDQVGDEIAGVIDLMKYV 403

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           + +  G     +   + P     S E   LA+    Q   +        P +   +   I
Sbjct: 404 YSQVFGFNYR-VELSTRPDNYMGSLELWNLAEEKLKQTLEATGTDYKINPGDGAFYGPKI 462

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                                          +    R  + G I     +       ++ 
Sbjct: 463 DF---------------------------HLEDSIGRTWQCGTI-QLDFQMPEKFDVSYV 494

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG DH  V +     G++     ++   + G    W   +AP ++ ++ +K       
Sbjct: 495 GADGADHRPVMIHRTVFGSLERFLGILIEHYAGAFPFW---LAPVQVRVLPVKP---EFE 548

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++ A L   G  V  D   E++G +   A L   P  +++G+K      V ++HR 
Sbjct: 549 DRSRQVEAALKSWGVRVEVDVRDEKLGKKIRDAQLSKVPYMIVIGAKEAETGGVSVRHRS 608

Query: 423 TGIREDMSLEEVINYASHRFS 443
            G    MS++ + +     F 
Sbjct: 609 DGDLGTMSMDVLRDRLQGEFK 629


>gi|124023562|ref|YP_001017869.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166225478|sp|A2CAU4|SYT_PROM3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123963848|gb|ABM78604.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9303]
          Length = 640

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 162/449 (36%), Gaps = 49/449 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG-MIH--QHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+ + +   + H  + + G+  W   G      +   IR
Sbjct: 226 KELKAYLKRLEE----AEKRDHRRIAKQMSLFHTQEEAPGMIFWHAKGWAIYQVLEQYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E  +     E+  P +    LW +SG ++ +  +M      N +     P +      IF
Sbjct: 282 ETLSLHAYQEIRTPQVVDRSLWEKSGHWEKFKDDMFTTTSEN-REYAIKPMNCPCHVQIF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +K 
Sbjct: 341 NQGLKSYRDLPIRLAEFGSCLRNEPSGSLHGLMRVRNFVQDDAHIF-CTELQVQEEVSKF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+   G  S+ ++  + P     S E    ++   +    +K      +P E  
Sbjct: 400 IDLVFEIYRSFGFDSVLIKLSTRPEKRVGSDEIWDKSEKALSDALDAKGLAWDLLPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            K    R  + G I      +S+P
Sbjct: 460 FYGPKIEFSL---------------------------KDCLGRVWQCGTI---QVDFSMP 489

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A++   D +    V +    +G+      ++   + G+  +W   +AP +++++ I
Sbjct: 490 ERLGASYVAEDSQRRTPVMLHRAILGSFERFIGILIEHYAGRMPVW---LAPVQVAVMGI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +      C+ +  +LS +      D   E+IG +     L   P  +I+G K     
Sbjct: 547 TDRNA---QTCQDVCKKLSALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQQSG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +V ++ R       M L   I+      +
Sbjct: 604 EVAVRTREGKDFGSMPLNSFISLLDEAIA 632


>gi|327439263|dbj|BAK15628.1| threonyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 643

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 173/443 (39%), Gaps = 34/443 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L         +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELDLFM-TSQTVGQGLPLWLPNGATIRRTIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S  L+  SG ++ Y   M    + +++ ++  P +      +F++ + 
Sbjct: 291 LGYKHVYTPVLGSKKLYETSGHWEHYQDGMFPPMEMDNETLVLRPMNCPHHMMVFKNGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++    R E+     G+ R R   + DA+ F + P+  K  + K+    L
Sbjct: 351 SYRHLPIRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIF-VRPDQIKAEFKKVVELIL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    LK    R                  D   T+ +   D M     +   +  D 
Sbjct: 410 EVYKDFDLKDFSFRLSYR--------------DPNNTEKYFDDDQMWETAQAMLKEAMDE 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +  +          A      + ++  ++ + + +S   ++    F    ++      ++
Sbjct: 456 LGYD--YFIAEDEAAFYGPKLDVQVKTAIGKEETLSTAQLD----FLLPQRF----DLSY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+     +   G+ + M    A +   + G    W   +AP + ++I +   + V 
Sbjct: 506 IGEDGQPQRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQATIIPVS--NAVH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L+  G  V  DD  E++G +   A +   P  +++G K V+++ V I+  
Sbjct: 561 YDYAREVQEKLAAAGIRVEMDDREEKLGYKIREAQMQKIPYMLVLGDKEVAENAVNIRRY 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            +   E +S E+ +   +     
Sbjct: 621 GSKDSETISFEQFLADITAEVKK 643


>gi|327470637|gb|EGF16093.1| threonine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 645

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V DS V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDSTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       +N 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIANK 642


>gi|332362439|gb|EGJ40239.1| threonine--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 654

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 236 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 293

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 294 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 353

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 354 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 412

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 413 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 458

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 459 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 508

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 509 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 563

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 564 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 623

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       ++ 
Sbjct: 624 RYGQKETHTIPVDEFVEQILADIASK 649


>gi|225387532|ref|ZP_03757296.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
 gi|225046368|gb|EEG56614.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
          Length = 584

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 148/448 (33%), Gaps = 47/448 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L   M      G   +LP G    + +    RE   
Sbjct: 177 LEQYLTMMEEAKKRDHRKLGKELGLF--MFADEGPGFPFFLPKGMTLKNTLIDYWREIHL 234

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+S P + S  LW  SG +D Y   M      +++     P +      ++++  
Sbjct: 235 REGYQEVSTPIILSRKLWENSGHWDHYKDNMYT-TVIDEEDFAVKPMNCPGGMLVYKNTP 293

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ L  R E   +  G+MR R F   DA+ F +  +  +     +    
Sbjct: 294 HSYRELPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MRDDQIEDEIKGVTRLI 352

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ + G +   +   + P     S E   +A  G  +              +   +  
Sbjct: 353 NEVYSQFGFEYF-VELSTRPEDSMGSDEDWEMATNGLRKALEDMGLDYIVNEGDGAFYGP 411

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
            I                               +    R  + G I   F    ++    
Sbjct: 412 KIDF---------------------------HLRDSLGRTWQCGTIQLDFQMPQRF---- 440

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   + +     G++     ++     GK  +W   +AP ++ +I +   
Sbjct: 441 DLEYTAEDGNKKRPIMIHRVCFGSIERFIGILIEHFAGKFPVW---LAPVQVKVIPV--- 494

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +Y +L   G     D   E++G +   A L   P  +++G K  ++  + 
Sbjct: 495 SEKSMDYATGVYEKLKAAGIRTELDHKDEKVGYKIRQAQLEKVPFMLVLGEKEAAEGAIT 554

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G      LE  I          
Sbjct: 555 VRSRDKGDLGAAQLEAFIGDVKRMIETK 582


>gi|196040031|ref|ZP_03107334.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196029290|gb|EDX67894.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
          Length = 639

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFKY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                   + L+  +       +N +
Sbjct: 614 YGEEKSGVIELDMFVESMKEEINNRK 639


>gi|19386908|gb|AAL87030.1|AF332624_1 threonyl-tRNA-synthetase [Azotobacter vinelandii]
          Length = 461

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R  Q   G
Sbjct: 52  YIQRIEEAEKRDHRKLGKRLDLF--HTQEEAPGMVFWHPNGWTVYQVLEQYMRAVQRENG 109

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y + M      + +     P +      ++   +KSY
Sbjct: 110 YLEIKTPQVVDRVLWEKSGHWANYAENMFTTESES-RDYAIKPMNCPCHVQVYNQGLKSY 168

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T E  +           ++
Sbjct: 169 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQMQAESAAFIKLTRQV 227

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+        S        P E   +   I 
Sbjct: 228 YADFGFQDIQLKLSTRPERRVGSGELWDRAEEALAAALESAGLPYELQPGEGAFYGPKIE 287

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  + A +
Sbjct: 288 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPVRLGAEY 317

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +  H V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 318 VSENNERQHPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 371

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 372 GEFALEVERTLNQGGFRAKCDLRNEKIGFKIREHTLLKVPYLLVIGDREVETHSVAVRTR 431

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +E+     +   +  
Sbjct: 432 EGVDLGTMPVEQFREMLAQAVARR 455


>gi|158291808|ref|XP_313346.3| AGAP003589-PA [Anopheles gambiae str. PEST]
 gi|157017465|gb|EAA08954.3| AGAP003589-PA [Anopheles gambiae str. PEST]
          Length = 461

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 143/465 (30%), Positives = 220/465 (47%), Gaps = 45/465 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASH-------KLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R SK F P L   P++A I S        +LML  G+I Q   G +  LPL Q++L    
Sbjct: 3   RVSKLFQPALI-IPKNATIKSQDITSKSQRLMLEQGLIRQAGNGTFYLLPLLQRSLQKAV 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYD----SYGKEMLRLADRNDKAMIYGPTH 110
            +I       GA +M +P L SA+LW +SGR          E+L+  DR+ K  I GPTH
Sbjct: 62  DLIDRHMEAVGAQKMVLPLLTSAELWKKSGRLSVTEAGTPTELLQTTDRHGKVQILGPTH 121

Query: 111 EEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           EE +T +  +    +YR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+   G
Sbjct: 122 EESITSLLAAIAPVTYRQFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVDRAG 181

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            + +Y+ +  +Y R+F  +G+  + +  + G +GG LSHE+   ++ GE ++        
Sbjct: 182 CQETYDSVNEAYGRLFREIGVPFVKVAGDCGTMGGSLSHEYHFPSEVGEDELIRCTRCGM 241

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                      +               A                       GIEV H F 
Sbjct: 242 HTNAELFPALSERCKSCETGSDTFERQA-----------------------GIEVAHAFI 278

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              +Y+  + AT   A+GK   +QMG YGIG  R++AA IE     K I WP ++AP+++
Sbjct: 279 LEDRYTKALGATCLAANGKPVPLQMGCYGIGVTRLLAASIEVLSSEKEIRWPVALAPYRV 338

Query: 350 SLINIKAHDQVCRDA---CEKIYARLSK----VGCDVFWDDMGE-QIGSQFAVADLLGFP 401
            +I  KA  +    A     K++  L       G DV  DD  +  IG +      +G+P
Sbjct: 339 CIITPKAGSKEEAQATPWVGKLHDDLQSLANCAG-DVIVDDRTQLTIGKRLLDTRKMGYP 397

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + V+VG+K  S+ K+E+     G    +   + ++  +   +  +
Sbjct: 398 VIVVVGAKAASEKKLELHDVAAGTEVSLPYSDTLSAVAEILTAAK 442


>gi|254828206|ref|ZP_05232893.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600595|gb|EEW13920.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 640

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 172/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDITDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|30020454|ref|NP_832085.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|229127762|ref|ZP_04256751.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|29896005|gb|AAP09286.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|228655839|gb|EEL11688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
          Length = 640

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVATIEEEIKNRK 639


>gi|229144961|ref|ZP_04273357.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228638483|gb|EEK94917.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
          Length = 640

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 165/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEATKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  ++    +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIENEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVATIEEEIKNRK 639


>gi|47565742|ref|ZP_00236782.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47557378|gb|EAL15706.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 639

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 161/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ + K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDHKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMKQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A++    V  S ++       +      
Sbjct: 408 DYVYKIFGFQY-EVELSTRPEDSMGDDKLWEQAESALANVLHSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEIADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + L   +        N +
Sbjct: 614 YGEEKSEVIELNGFVESIKEEIKNKK 639


>gi|329927796|ref|ZP_08281857.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938197|gb|EGG34592.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 636

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 154/435 (35%), Gaps = 41/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   M  + + G+  +LP G    + +    R  Q      E+  P
Sbjct: 239 AKKRDHRKLGKELGLF--MFSEEAPGMPFFLPNGMIIRNELEQFARGLQFHRDYDEVRTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +D Y   M      ++      P +      ++++ + SYR LP   
Sbjct: 297 LMMNKRLWEMSGHWDHYKDNMY-FTQVDETEYALKPMNCPGHMLVYKNSLHSYRELPIRI 355

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F + P+  +    ++     +++   G +
Sbjct: 356 SEFGQVHRHEFSGALNGMMRVRTFCQDDAHIF-VRPDQIQEEIKQVIDFISQVYQVFGFE 414

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A++   QV             +   +   I  + +   
Sbjct: 415 Y-TIELSTRPEDSMGSEELWEQAESSLQQVLDQMGLPYRINEGDGAFYGPKIDFHILDS- 472

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                                       R  + G I     ++      ++ G D + H 
Sbjct: 473 --------------------------LKRSWQCGTI-QLDFQFPEKFDLSYIGEDNQKHR 505

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++   + G   +W   +AP ++ +I +  H     D   K+  
Sbjct: 506 PVVIHRAVFGSIERFIGILTEHYGGAFPMW---LAPVQVMIIPVSDH---YIDYSLKVKK 559

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL   G  V  D   E++G +   A LL  P  +++G K +    V ++ R  G   +++
Sbjct: 560 RLENAGIRVNVDVRNEKLGYKIREAGLLKTPYTLVLGEKEMDSDHVSVRKRGEGELGEIA 619

Query: 431 LEEVINYASHRFSNN 445
           +++VI    +   + 
Sbjct: 620 IDQVIERLRNEIESK 634


>gi|307705352|ref|ZP_07642214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307621139|gb|EFO00214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 647

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYGDFNLNEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + + +++ +       +N 
Sbjct: 617 RYGQKETQTVLVDDFVQAILADIANK 642


>gi|52143093|ref|YP_083736.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|51976562|gb|AAU18112.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 639

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   +AP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---IAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 + + L+  +       +N +
Sbjct: 614 YGEEKSDVIELDMFVESIKEEINNRK 639


>gi|196033851|ref|ZP_03101262.1| threonyl-tRNA synthetase [Bacillus cereus W]
 gi|228945992|ref|ZP_04108333.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|195993531|gb|EDX57488.1| threonyl-tRNA synthetase [Bacillus cereus W]
 gi|228813685|gb|EEM59965.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 639

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  V++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLTQAGVRVERDMRDEKLGYKIREAQMQKVPYVVVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                   + L+  +       +N +
Sbjct: 614 YGEEKSGVIELDMFVESMKEEINNRK 639


>gi|325694840|gb|EGD36745.1| threonine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 647

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMDVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       ++ 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIASK 642


>gi|313890276|ref|ZP_07823910.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121381|gb|EFR44486.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 648

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 181/449 (40%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   M++ +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S D +  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 ASGYQHVYTPPMASVDFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F +TP+  +  + +    
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLF-VTPDQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  + + +   D M     S      
Sbjct: 406 IIDVYKDFNLTDYRFRLSYR--------------DPNDKEKYFDNDEMWEKAQSMLKAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G  V  DD  E++  +   +     P Q+IVG K + +  V ++
Sbjct: 557 AHVDYAWEVAKLLRDKGVRVDVDDRNEKMQYKIRASQTGKIPYQLIVGDKEMDEKSVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              + + + +++ E ++      S  +RP
Sbjct: 617 RYGSKVTQTVAISEFVDTILADISRKSRP 645


>gi|322392280|ref|ZP_08065741.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144815|gb|EFX40215.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 647

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KDYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRILERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEDEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPADKHKYFDNDEMWENAQRMLKAAV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMGVE--YYEAEGEAAFYGPKLDIQMKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I +   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTVIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G  V  D+  E++  +   +     P Q+IVG K + ++ V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRVDVDERNEKMQFKIRASQTQKIPYQLIVGDKEMDENAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  E M ++  +       +N 
Sbjct: 617 RYGQKETETMPVDAFVELILADIANK 642


>gi|167517909|ref|XP_001743295.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778394|gb|EDQ92009.1| predicted protein [Monosiga brevicollis MX1]
          Length = 421

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 130/420 (30%), Positives = 212/420 (50%), Gaps = 28/420 (6%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L+++ G I Q S G+Y  LPL ++ L  +  ++R E +  GA E+S+ TL   DLW  S
Sbjct: 6   QLLVQAGYIAQSSSGMYHMLPLAKRVLGKLENLVRAEMSAIGAQEISLSTLTGKDLWTHS 65

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR+D+   E+ R+ DR        PTHEE +T + +S+++S RN+P   YQ+  K+RDEL
Sbjct: 66  GRWDTVSSELFRVEDRRGAVYCLAPTHEEAITTLAKSYVRSARNMPLYLYQLDRKYRDEL 125

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR G++R REF MKD Y+FD+  + ++ +Y  +  +Y  +F  L +  + + A++G IG
Sbjct: 126 RPRSGLLRGREFYMKDLYTFDVDEQAARLTYESVVKAYHNLFTHLHVPYVAVEADTGAIG 185

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G +SHEF VLA  GE  V                      ++    ++            
Sbjct: 186 GSMSHEFQVLAPVGEDSV----------------------TVCHTCDRAANLEVMPGSEA 223

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                      +  S  GIEVGH F  G KYS     T+    G      MG YG+G  R
Sbjct: 224 GTTPVAPTDHCQFESHAGIEVGHTFLLGHKYSSMFDVTYDSPSG-PELAFMGCYGLGTSR 282

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG-CDVFW 381
           ++AAV E+     G+ WP S+AP+++++I + A  +     A   +  +L++    DV  
Sbjct: 283 ILAAVTEALASENGLRWPLSLAPYRVAVITLGASRNDNIESAATCLTEQLNEAMPGDVLL 342

Query: 382 DDM--GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DD      +  + A   L+G P  V+VGS++ +  ++E+          +++ ++I  A+
Sbjct: 343 DDRCVDLSLRQKIATMRLIGVPYVVVVGSRY-NARQLEVYDSHNEAPRKIAVHDLIQLAA 401


>gi|322411327|gb|EFY02235.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 647

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 177/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIRDEFKRTLQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 404 IIDVYEDFNLTDYRFRLSYR--------------DPEDTHKYYDNDEMWENAQAMLKGAM 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DDMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   +I   L   G     DD  E++  +   +     P Q+IVG K + +  V ++
Sbjct: 555 AHIDYAWEIAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+E+ +       +  +RP
Sbjct: 615 RYGSKATHTESVEDFVENILADIARKSRP 643


>gi|301794619|emb|CBW37067.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 647

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|319790149|ref|YP_004151782.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317114651|gb|ADU97141.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 658

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 83/468 (17%), Positives = 165/468 (35%), Gaps = 61/468 (13%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + FL  L+E   RD  +   +L L  G+  +   G+  W P G      +   + EE
Sbjct: 227 KELEEFLHRLEEAKKRDHRVLGKQLDLF-GIYEEAGPGLVFWHPNGAIIRQEIEQWVEEE 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDK-------------- 102
             + G   +  P +  ADLW  SG Y+ Y + M  +     D  ++              
Sbjct: 286 HRKRGYQRIYTPHIMKADLWKRSGHYNFYRENMFFVPVVEHDEEERLGNDEVPLTCSEIE 345

Query: 103 ---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMK 158
                   P +      I++S ++SYR+LP  F++    +R E      G++R R F   
Sbjct: 346 KAHWYAVKPMNCPGHILIYKSQVRSYRDLPIRFFEFGTVYRYEKSGSLHGLLRVRGFTQD 405

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D + F   P+  K     +    + +     L  + +   + P     + E    A    
Sbjct: 406 DGHIF-CRPDQLKEEIQGVMDYIMDLLSTFKLDYV-INVGTRPEKFIGTEEAWEHATNAL 463

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +    + F    +  +                     A      +  + D++       
Sbjct: 464 IEALKERGFEYNIVEGDG--------------------AFYGPKIDIAVLDAIGRKWDGP 503

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
              ++    F    ++      T+   DG K   V +    +G++     ++   + G  
Sbjct: 504 TIQVD----FNLPERF----DLTYVDRDGQKKRPVMVHRAIMGSIERFIGLLIEHYAGLF 555

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             W   +AP +  +I +        D  +++YA+L + G  V  DD   ++G +   A+ 
Sbjct: 556 PTW---LAPVQAVIIPV---SDKYLDYADEVYAKLKEAGIRVKLDDESAKVGYKIRKAET 609

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              P  +IVG +   +  V ++ +  G   +M L++ ++         
Sbjct: 610 QKIPYMLIVGEREKENQTVSVRSKREGDLGEMELQQFLDKILTEIKEK 657


>gi|17987198|ref|NP_539832.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|256044731|ref|ZP_05447635.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564073|ref|ZP_05834559.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265991152|ref|ZP_06103709.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|22654120|sp|Q8YH89|SYT_BRUME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17982868|gb|AAL52096.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260154089|gb|EEW89181.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|263001936|gb|EEZ14511.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 658

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 QINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|319898981|ref|YP_004159074.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319402945|emb|CBI76496.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 658

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 95/449 (21%), Positives = 160/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E     E   H+ + R        +   G+  W P G K   N+ + +R   
Sbjct: 233 KVYLHMLEET----EKRDHRRLGREMDLFHFQEEGPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKA-MIYGPTHEEVMTD 116
           +     E+  P +    LW  SG +  Y + M +      D N++      P +      
Sbjct: 289 DDHKYAEVQAPQVLDKSLWEVSGHWRWYKENMFKTIPAADDWNNEYIYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  L  R E      G+MR+R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRARSFTQDDAHIF-CTEEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G + I ++  + P     S E    A+   T V  +           
Sbjct: 408 SINDLILSTYADFGFEEISLKLSTRPEKRVGSDELWDHAENIMTSVLKT----------- 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +  S   +         A      E         K    R  + G        ++
Sbjct: 457 ----IEKKSSGRVRISILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 503

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +     G+M     ++  +  G    W   +AP +I++ 
Sbjct: 504 LPERFGAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFSGHMPFW---LAPQQIAVA 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      D  +KI A+L  +G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 561 TITSD---ANDYAKKITAKLKAIGLSVILDSRNEKINYKIREHSLQKIPVILVCGKREAE 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  +SLEEVI      
Sbjct: 618 TNSVNMRRLGSVEQSLLSLEEVIKQLLDE 646


>gi|219666254|ref|YP_002456689.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536514|gb|ACL18253.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 639

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 157/447 (35%), Gaps = 42/447 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H    G   + P G    + +    R+E  + G
Sbjct: 232 YLFKLEEAKRRDHRKLGVELDLFS--LHDEGPGFPFFHPKGMVLRNQLEDFWRQEHRKRG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S +LW  SG +D Y   M      +D+     P +      +++  ++SY
Sbjct: 290 YHEIKTPIILSRNLWENSGHWDHYKDNMYTTK-IDDEDFAVKPMNCPGGMIMYKQKLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G++R R F   DA+ F L P   K   + +     R 
Sbjct: 349 RDLPLRMGELGLVHRHELSGALNGLLRVRNFTQDDAHIFML-PSQIKAEISGVIDLVDRF 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     + E   +A     +   +K       P +   +   I 
Sbjct: 408 YKVFGFEY-HVELSTRPENSMGADETWEMATNALQEALEAKGVNYKINPGDGAFYGPKID 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G I     +       T+ G
Sbjct: 467 F---------------------------HLRDCLGRTWQCGTI-QLDFQMPEKFDLTYIG 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++    A++   + G    W   +AP ++ ++ I    +   D
Sbjct: 499 EDGQKHRPVMIHRVVYGSIERFIALLTEHYAGAFPTW---LAPVQVRVLPI---SERHED 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  RL+ +      D+  E+I  +   A     P  ++VG +      V ++    
Sbjct: 553 YAQDIVRRLNDLDIRAEVDERREKISYKIREAQTHKIPFALVVGDQEAETDTVAVRRYGQ 612

Query: 424 GIRED-MSLEEVINYASHRFSNNRPVL 449
               + +S+ E I        + + ++
Sbjct: 613 ANAGEKLSVAEFIALIQEEICSKKQLV 639


>gi|89892986|ref|YP_516473.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense Y51]
 gi|89332434|dbj|BAE82029.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 641

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 157/447 (35%), Gaps = 42/447 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H    G   + P G    + +    R+E  + G
Sbjct: 234 YLFKLEEAKRRDHRKLGVELDLFS--LHDEGPGFPFFHPKGMVLRNQLEDFWRQEHRKRG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S +LW  SG +D Y   M      +D+     P +      +++  ++SY
Sbjct: 292 YHEIKTPIILSRNLWENSGHWDHYKDNMYTTK-IDDEDFAVKPMNCPGGMIMYKQKLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G++R R F   DA+ F L P   K   + +     R 
Sbjct: 351 RDLPLRMGELGLVHRHELSGALNGLLRVRNFTQDDAHIFML-PSQIKAEISGVIDLVDRF 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     + E   +A     +   +K       P +   +   I 
Sbjct: 410 YKVFGFEY-HVELSTRPENSMGADETWEMATNALQEALEAKGVNYKINPGDGAFYGPKID 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G I     +       T+ G
Sbjct: 469 F---------------------------HLRDCLGRTWQCGTI-QLDFQMPEKFDLTYIG 500

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++    A++   + G    W   +AP ++ ++ I    +   D
Sbjct: 501 EDGQKHRPVMIHRVVYGSIERFIALLTEHYAGAFPTW---LAPVQVRVLPI---SERHED 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  RL+ +      D+  E+I  +   A     P  ++VG +      V ++    
Sbjct: 555 YAQDIVRRLNDLDIRAEVDERREKISYKIREAQTHKIPFALVVGDQEAETDTVAVRRYGQ 614

Query: 424 GIRED-MSLEEVINYASHRFSNNRPVL 449
               + +S+ E I        + + ++
Sbjct: 615 ANAGEKLSVAEFIALIQEEICSKKQLV 641


>gi|229079560|ref|ZP_04212097.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228703729|gb|EEL56178.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
          Length = 640

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYKYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVATIEEEIKNRK 639


>gi|148994898|ref|ZP_01823919.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|148997679|ref|ZP_01825243.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149006698|ref|ZP_01830384.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|149021279|ref|ZP_01835525.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168483499|ref|ZP_02708451.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|168487280|ref|ZP_02711788.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|168488656|ref|ZP_02712855.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|168491490|ref|ZP_02715633.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|168575182|ref|ZP_02721145.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|169834472|ref|YP_001695022.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|225859387|ref|YP_002740897.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225861459|ref|YP_002742968.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229236|ref|ZP_06962917.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254509|ref|ZP_06978095.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|307068259|ref|YP_003877225.1| threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|307127841|ref|YP_003879872.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|238688351|sp|B1I703|SYT_STRPI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783538|sp|C1C8M1|SYT_STRP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783543|sp|C1CSP6|SYT_STRZT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147756178|gb|EDK63220.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147761613|gb|EDK68577.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147926966|gb|EDK78011.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|147930380|gb|EDK81364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168996974|gb|ACA37586.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043101|gb|EDT51147.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|183569836|gb|EDT90364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183572780|gb|EDT93308.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|183574162|gb|EDT94690.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183578687|gb|EDT99215.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225720074|gb|ACO15928.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225727271|gb|ACO23122.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|306409796|gb|ADM85223.1| Threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|306484903|gb|ADM91772.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|327389816|gb|EGE88161.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332072464|gb|EGI82947.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
 gi|332072798|gb|EGI83279.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
 gi|332073965|gb|EGI84443.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332199661|gb|EGJ13736.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
 gi|332200192|gb|EGJ14265.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
          Length = 647

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|295111615|emb|CBL28365.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Synergistetes
           bacterium SGP1]
          Length = 633

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 153/441 (34%), Gaps = 42/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H+   G   + P G   ++ +    R E  R G
Sbjct: 229 YLKRMEEAKLRDHRKLGRELDLFS--LHEEGPGFPFFHPKGMVVMNTLIDFWRREHVRRG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW+ SG +D Y + M    + ++K     P +      I+++ + SY
Sbjct: 287 YQEVRTPQILDRELWLRSGHWDHYRENMY-FTEIDEKPFAIKPMNCPGGILIYKTQLHSY 345

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+MR R F   DA+ +   P   +     +      +
Sbjct: 346 RELPMRIGELGVVHRHERSGVLHGLMRVRCFTQDDAHLY-CEPSQIQQEVMGIMDLCRYV 404

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G K   +   + P     S E    A+ G        +        +   +   I
Sbjct: 405 YSDVFGFKY-AVELSTKPENAMGSTEQWEAAENGLRAALEQSNTPYRVNEGDGAFYGPKI 463

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                                          +    R  + G I     +        + 
Sbjct: 464 DF---------------------------HLEDCIGRTWQCGTI-QLDFQMPERFDMHYI 495

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DGK+H  V +    +G++     ++   + G    W   +AP +  LI I    +  R
Sbjct: 496 AEDGKEHRPVMLHRTILGSLERFMGILIEHYAGAFPYW---IAPVQAELIPI---SEAHR 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++   L   G     D   E++G +   A L   P  +++G K   + +V ++ R 
Sbjct: 550 AYAEELRKELMSWGVRTETDSRDEKLGKRIRDAQLQKVPYMIVIGDKERDERQVAVRERT 609

Query: 423 TGIREDMSLEEVINYASHRFS 443
            G    MSLE      S  F+
Sbjct: 610 KGDLGSMSLEAFQKLLSAEFN 630


>gi|47096724|ref|ZP_00234309.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898274|ref|ZP_05258198.1| threonyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912233|ref|ZP_05262245.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936561|ref|ZP_05268258.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|47014908|gb|EAL05856.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609155|gb|EEW21763.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590208|gb|EFF98542.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 640

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 173/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      ++
Sbjct: 452 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLSY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|15901467|ref|NP_346071.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111657539|ref|ZP_01408280.1| hypothetical protein SpneT_02001261 [Streptococcus pneumoniae
           TIGR4]
 gi|149011514|ref|ZP_01832761.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|303253984|ref|ZP_07340104.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303258557|ref|ZP_07344537.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262647|ref|ZP_07348587.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303263586|ref|ZP_07349508.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303266970|ref|ZP_07352845.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303269866|ref|ZP_07355610.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|22654131|sp|Q97PI4|SYT_STRPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14973120|gb|AAK75711.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|147764504|gb|EDK71435.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|301802334|emb|CBW35088.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302599072|gb|EFL66098.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636203|gb|EFL66698.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302640058|gb|EFL70513.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302640601|gb|EFL71004.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302643487|gb|EFL73759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302646624|gb|EFL76849.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 647

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 VSGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|157127485|ref|XP_001655003.1| prolyl-tRNA synthetase [Aedes aegypti]
 gi|108872928|gb|EAT37153.1| prolyl-tRNA synthetase [Aedes aegypti]
          Length = 435

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 144/456 (31%), Positives = 224/456 (49%), Gaps = 45/456 (9%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + SK F P L   P++A +        S +LML  G++ Q   G +  LPL Q+++    
Sbjct: 3   KLSKIFQPSLI-IPKNAIVKNQDITSKSQRLMLEQGLMRQAGNGTFYILPLLQRSVQKAI 61

Query: 55  AIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
            ++     +  GA ++++P L SADLW +SGR ++ G E++   DR+ K  I GPTHEE 
Sbjct: 62  DLVDHHMQHFAGAEKLTLPILTSADLWRKSGRLETAGGELMSTTDRHGKRQILGPTHEES 121

Query: 114 MTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  +    SYR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+    ++ 
Sbjct: 122 ITALLAAISPVSYRQFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVGLAEARQ 181

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F  +G+  + +R ++G +GG  SHE+   ++ GE Q+ C         
Sbjct: 182 TYEVVNEAYRRLFEAVGVPFVKVRGDTGVMGGSTSHEYHFPSEVGEDQLVCCSVCGM--- 238

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N +  D                       EK  +    +      GIEVGH F    
Sbjct: 239 -GCNQEMFD----------------------GEKACERCNNSNIGRQAGIEVGHAFILED 275

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + A F   +GK   +QMG YGIG  R++AA +E     K I WP ++APFK+ LI
Sbjct: 276 KYSKALGAMFLNQNGKPEALQMGCYGIGITRLIAAGVEVLSSEKEIRWPRALAPFKVCLI 335

Query: 353 NIKAHD------QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVI 405
             K         +      E   ++LS VG +V  DD     IG +   A   G+P+ V+
Sbjct: 336 PPKKGSKEESLVEPWLHRLEDEVSKLSSVGSEVVVDDRTSLTIGKRLLDAKKTGYPVVVV 395

Query: 406 VGSKFVSDSK--VEIKHRLTGIREDMSLEEVINYAS 439
           +G K   +     E+ ++    ++ +   E +    
Sbjct: 396 IGPKAADEGAELFEVHNQTDETQKLLGFSETVKEIE 431


>gi|288959315|ref|YP_003449656.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911623|dbj|BAI73112.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 650

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 165/445 (37%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  ++E   RD      +L L    + + + G   W P G      +   IR +
Sbjct: 230 KELKAYLHQIEEAEKRDHRKLGKELDLF--HVQEEAVGSVFWHPKGWTLYRTLETYIRTK 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFR 119
                 +E+  P L  + L+  SG +D YG  M ++  D  +K +   P +      IFR
Sbjct: 288 LKAADYVEVKTPQLIDSSLFKASGHWDMYGDNMFKVEADGGEKLLGIKPMNCPGHVQIFR 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + ++SYR+LP    +     R+E      G+MR R F   DA+ F  T +  +    + F
Sbjct: 348 NGLRSYRDLPIRMAEFGACHRNEPSGALHGIMRVRAFTQDDAHIF-CTEDQVQSEAAEYF 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++  LG   I ++    P     + E    A+    Q           +P E   
Sbjct: 407 KLQLGVYKDLGFDQISVKLALRPDVRTGADELWDRAEGALAQALRDAGLEYEELPGEGAF 466

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +  +                                 R  + G         +LP 
Sbjct: 467 YGPKVEFHLTDA---------------------------IGRTWQCGT---LQYDPNLPE 496

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A++ G DG  H  + +    +G+M     ++   + GK  +W   ++P ++++  I 
Sbjct: 497 RLDASYIGEDGARHRPIMLHRAILGSMERFIGMLIEHYAGKFPLW---LSPVQVTVATIT 553

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      D   ++   L + G  V  D   E+I  +     L   PL ++VG +   +  
Sbjct: 554 S---EADDYAVEVAKLLKRKGLRVELDTRNEKINLKVREHSLQKVPLMLVVGKREAEERT 610

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V ++      +E ++L++ +     
Sbjct: 611 VALRVLGGKDQEILALDDAVAKLIE 635


>gi|206971420|ref|ZP_03232370.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228952703|ref|ZP_04114777.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229069894|ref|ZP_04203176.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|206733405|gb|EDZ50577.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228713297|gb|EEL65190.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228806979|gb|EEM53524.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 640

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYKYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVATIEEEIKNRK 639


>gi|254522893|ref|ZP_05134948.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219720484|gb|EED39009.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 633

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 153/445 (34%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ + ++  ++E    AE+  H+ + +      + + + G+  W P G      V   +R
Sbjct: 227 KQLEAYIKRIEE----AEMRDHRRIGKQQDLFHLQEEAPGLVFWHPKGWALWQVVEQYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   +TG  E+  P +    LW +SG +D+Y   M    +   +     P +      +F
Sbjct: 283 KVYRKTGYGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYALKPMNCPGHVQVF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              + SYR+LP  + +     R+E      G++R R F   D + F  T    +      
Sbjct: 342 NQGLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVF-CTENQVEAEVTAF 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I ++    P            A+        S       +P E  
Sbjct: 401 HQQALAVYQHFGFDEIQVKIALRPESRLGDDATWDKAEGALRSALSSNGVEWQELPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L D++    ++    ++       G      
Sbjct: 461 FYGPKIEY--------------------HLKDAIGRTWQLGTMQVDFMMPGRLG------ 494

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   +  K H V +    +G+M     ++   H G+   W   +AP ++ + NI  
Sbjct: 495 --AEYVDENSQKKHPVMLHRAIVGSMERFLGILIEHHAGQFPAW---LAPTQVVVANIT- 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +    +   L++ G  V  D   E+IG +     L   P  +++G +   +  V
Sbjct: 549 --DAQAEYVSGVTKTLAEQGFRVSSDLRNEKIGYKIREHTLQRVPYLLVIGDREKENGAV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ R       MSL+  I      
Sbjct: 607 AVRTRSGEDLGSMSLQAFIERLHAE 631


>gi|308049557|ref|YP_003913123.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Ferrimonas
           balearica DSM 9799]
 gi|307631747|gb|ADN76049.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Ferrimonas
           balearica DSM 9799]
          Length = 644

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 157/451 (34%), Gaps = 47/451 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      +   +R++
Sbjct: 227 KQLKAYLQRLEEAAKRDHRKIGKALDLF--HWQEEAPGMVFWHNDGWTIYQELEGFMRKQ 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P +    +W  SG +D Y  EM+   +   +     P +      IF+ 
Sbjct: 285 LHKYGYEEVRTPLVMDKVMWERSGHWDKYS-EMIFATESEKRTYAVKPMNCPGHLQIFKQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP+   +  L  R+E      G+MR R F   DA+ F  T E           
Sbjct: 344 GLKSYRDLPYRMAEFGLVHRNEPSGSLHGLMRVRSFTQDDAHIF-CTEEQILDEVTSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G + I ++  + P     S +    A+    +   +        P E   +
Sbjct: 403 MVYDTYKTFGFEEIEVKLSTRPEQRIGSDDLWDKAEKSLAEALDANGLKYELQPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I                                    R  + G I      +S+P  
Sbjct: 463 GPKIEFTL---------------------------HDCLDRAWQCGTI---QLDFSMPQP 492

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             +  ++ G D  +   V +    +G++     ++   + GK   W   +AP ++ ++NI
Sbjct: 493 ERLDVSYVGEDNSRKVPVMIHRAILGSLERFIGILIEEYAGKLPTW---LAPTQVQVMNI 549

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +     D   ++   L+  G     D   E+IG +     L   P  ++ G + + + 
Sbjct: 550 TDN---QADYVRQVVEMLNDQGIRAKADLRNEKIGFKIREHTLKRVPYLLVCGDQEMENG 606

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ I+ R       M LE+     +      
Sbjct: 607 EIAIRTRNGVDLGKMKLEQFAAAVAQEIRTR 637


>gi|49479942|ref|YP_036488.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|218903521|ref|YP_002451355.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228927442|ref|ZP_04090498.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121934|ref|ZP_04251153.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|49331498|gb|AAT62144.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|218538936|gb|ACK91334.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228661583|gb|EEL17204.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228832235|gb|EEM77816.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 639

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFKY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 + + L+  +       +N +
Sbjct: 614 YGEEKSDVIELDMFVESMKEEINNRK 639


>gi|154495989|ref|ZP_02034685.1| hypothetical protein BACCAP_00272 [Bacteroides capillosus ATCC
           29799]
 gi|150274872|gb|EDN01928.1| hypothetical protein BACCAP_00272 [Bacteroides capillosus ATCC
           29799]
          Length = 586

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 95/442 (21%), Positives = 160/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T M      G   +LP G    + +    R+   + G
Sbjct: 181 YLQRIEEAKKRDHRKLGKELGLFTLM--DEGPGFPFFLPNGMVLRNTLIDYWRQIHKKYG 238

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y   M      + +     P +      ++++   SY
Sbjct: 239 YVEISTPMMLNRQLWERSGHWDHYKNNMYT-TVIDGEDFAIKPMNCPGGMLVYKTEPHSY 297

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+ F +T E  K    +    +  +
Sbjct: 298 RDLPLRVGELGLVHRHELSGALHGLFRVRCFTQDDAHVF-MTREQMKDVIQETVRLFDEV 356

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL    +   + P     + E     +  +  +                   D+  
Sbjct: 357 YSTFGLNY-TIELSTMPEDHIGTVE---EWERNQDIL--------------KNAITDMGK 398

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H                R  + G I    ++        + G
Sbjct: 399 EFVINEGDGAFYGPKLDFHLADSLG----------RTWQCGTI-QLDSQLPERFELEYTG 447

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H  V +    +G++     VI     G    W   ++P ++S++ I         
Sbjct: 448 ADGEKHRPVMIHRVVLGSIERFIGVITEHFAGAFPAW---LSPVQVSILPIT---DRTAQ 501

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ A L K G  V  D   E+IG +   A L   P  +++G K    + V +++R  
Sbjct: 502 YADEVKALLEKAGFRVEVDHRNEKIGKKIREAQLKKVPYMLVLGDKEAEGATVAVRNRAG 561

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G +  MSL+E IN         
Sbjct: 562 GDQGAMSLDEFINILREEVEQK 583


>gi|296502926|ref|YP_003664626.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|296323978|gb|ADH06906.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 640

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  ++    +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIENEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVATIEEEIKNRK 639


>gi|260655005|ref|ZP_05860493.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260630320|gb|EEX48514.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 623

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 160/445 (35%), Gaps = 46/445 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   RD      ++ L +   H+   G   + P G   ++++    R    
Sbjct: 210 LETYLKRMEEAKKRDHRKIGKEMDLFS--FHKEGIGFPFFHPKGMVVMNSLLDFWRRLHT 267

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E   P + + DLWV+SG +D Y + M      ++      P +      I++  +
Sbjct: 268 LNGYSEARTPMILNRDLWVQSGHWDHYQQNMY-FTTIDEMPCAIKPMNCPGGILIYKDRL 326

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+  P    ++    R E      G+MR R F   DA+ F  TPE  K     +    
Sbjct: 327 HSYKEFPIRLAELGHVHRHEKTGELHGLMRVRSFTQDDAHHF-CTPEQIKDEVKFIMALD 385

Query: 182 LRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             ++ +  G K   +   + P     S E    A+    +     +      P +   + 
Sbjct: 386 DYVYSKVFGFKY-HVELSTRPDNSIGSDELWATAEKALQETLEETNTPYVLNPGDGAFYG 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               +    R  + G I      +S+P   
Sbjct: 445 PKIDF---------------------------HLEDCIGRTWQCGTI---QLDFSMPEKF 474

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G DGK+H  V +    +G++     ++   + G    W   +AP ++ ++ +   
Sbjct: 475 DMVYIGPDGKEHRPVMLHRTILGSIERFMGILIEQYAGAFPYW---MAPVQVKILPVN-- 529

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      + +  +L+  G  V  D   E++G +   A +   P  +++G K V +  V 
Sbjct: 530 -ESHVAYAKDLKDQLADRGHRVEIDLSDEKLGKKIRNAQVEKVPFMLVIGDKEVENKTVA 588

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           ++ R  G +  +S E++    ++++
Sbjct: 589 LRDRAEGDKGSVSQEQLFELLANQY 613


>gi|194397191|ref|YP_002038247.1| threonyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|238690846|sp|B5E6Q8|SYT_STRP4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194356858|gb|ACF55306.1| threonyl-tRNA synthetase (thrS) [Streptococcus pneumoniae G54]
          Length = 647

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|225855059|ref|YP_002736571.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|237649181|ref|ZP_04523433.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822258|ref|ZP_04598103.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|254783541|sp|C1CFK0|SYT_STRZJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225723844|gb|ACO19697.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 647

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|118477787|ref|YP_894938.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|229184596|ref|ZP_04311798.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|118417012|gb|ABK85431.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598913|gb|EEK56531.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
          Length = 639

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 162/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                   + L+  +        N +
Sbjct: 614 YGEEKSGVIELDMFVESMKEEIKNRK 639


>gi|228933677|ref|ZP_04096525.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826004|gb|EEM71789.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 639

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFKY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 + + L+  +       +N +
Sbjct: 614 YGEEKSDVIELDMFVESMKEEINNRK 639


>gi|218231087|ref|YP_002367070.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|218159044|gb|ACK59036.1| threonine--tRNA ligase [Bacillus cereus B4264]
          Length = 640

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYKYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVASIEEEIKNRK 639


>gi|116515338|ref|YP_816901.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|161410743|ref|NP_359065.2| threonyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|73621971|sp|Q8DNX8|SYT_STRR6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122278253|sp|Q04JD7|SYT_STRP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116075914|gb|ABJ53634.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 647

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 VSGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|33862697|ref|NP_894257.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|73919817|sp|Q7V8D2|SYT_PROMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33634613|emb|CAE20599.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9313]
          Length = 640

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 162/449 (36%), Gaps = 49/449 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG-MIH--QHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+ + +   + H  + + G+  W   G      +   IR
Sbjct: 226 KELKAYLKRLEE----AEKRDHRRIAKQMSLFHTQEEAPGMIFWHAKGWAIYQVLEQYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E  +     E+  P +    LW +SG ++ +  +M      N +     P +      IF
Sbjct: 282 ETLSLHDYQEIRTPQVVDRSLWEKSGHWEKFKDDMFTTTSEN-REYAIKPMNCPCHVQIF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +K 
Sbjct: 341 NQGLKSYRDLPIRLAEFGSCLRNEPSGSLHGLMRVRNFVQDDAHIF-CTELQVQEEVSKF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G  S+ ++  + P     S E    ++   +    +K      +P E  
Sbjct: 400 IDLVFEVYRSFGFDSVLIKLSTRPEKRVGSDEIWDKSEKALSDALDAKGLAWDLLPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            K    R  + G I      +S+P
Sbjct: 460 FYGPKIEFSL---------------------------KDCLGRVWQCGTI---QVDFSMP 489

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A++   D +    V +    +G+      ++   + G+  IW   +AP ++ ++ I
Sbjct: 490 ERLGASYVAEDSQRRTPVMLHRAILGSFERFIGILIEHYAGRLPIW---LAPVQVVVMGI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +     AC+ I  +LS +      D   E+IG +     L   P  +I+G K     
Sbjct: 547 TDRNA---QACQDICKKLSALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQQSG 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +V ++ R       M L+   +      +
Sbjct: 604 EVAVRTREGKDFGSMPLKGFTSLLDEAIA 632


>gi|295696884|ref|YP_003590122.1| threonyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295412486|gb|ADG06978.1| threonyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 641

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 163/451 (36%), Gaps = 46/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R+ + +L  ++E    A    H+ + R          + G+   LP G    + +   +R
Sbjct: 232 RQLEEYLRRVEE----ARKRDHRRVGRDLELFFFADEAPGMPFLLPKGMVIRNELERFMR 287

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E  N     E+  P L    LW  SG +D Y + M    + +++     P +       F
Sbjct: 288 EFLNEYDYEEVKTPILMDRVLWERSGHWDHYKENMY-FTEVDEREFALKPMNCPGHALTF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  ++SYR+LP    +  L  R EL     G++R REF   DA+ F + P+  +      
Sbjct: 347 KHRVRSYRDLPIRMAEFGLLHRHELSGALHGLLRVREFTQDDAHLF-VRPDQIQDEVFAC 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R++   G     +   + P     S E    A  G  +   S+         +  
Sbjct: 406 MDLIDRVYAAFGFPYR-VELSTRPENSTGSDELWEAATEGLRKALESRGLEYQINEGDG- 463

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + DSL  + +     ++    F    K+   
Sbjct: 464 -------------------AFYGPKIDFHVKDSLGRSHQCGTIQLD----FQMPEKF--- 497

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+ G D + H  V +    +G+      ++   ++G   +W   +AP +  ++ I A
Sbjct: 498 -DLTYVGEDNERHRPVMIHRAVLGSFERFFGLLIEHYNGAFPVW---LAPVQARVLTIGA 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    +++ +R   +G  V  D   E+IG +   A +   P  +++G +     +V
Sbjct: 554 G---HLPYAKEVQSRARAMGLRVEVDGRAEKIGYKVREAQVQKIPYMLVIGDQEAQTGEV 610

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++ R  G     S EEV+   +       P
Sbjct: 611 SVRKRGQGDLGRRSAEEVLVAIAEEARTRTP 641


>gi|292493207|ref|YP_003528646.1| threonyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291581802|gb|ADE16259.1| threonyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 644

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 39/445 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD      +L L + +  +   G+  W P+G +    +    RE 
Sbjct: 226 KALKAYLHRLEEAEKRDHRRIGTELDLFS-IQDEAGGGLVFWHPMGARIRQVIEDFWRER 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G   +  P +    LW  SG  D Y + M +  + + +     P +      +++ 
Sbjct: 285 HRAAGYETLYTPHIAHQQLWQTSGHTDFYRESMYQPMEEDHQLYQLKPMNCPFHVLVYKG 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP  + ++   +R E+     G+MR R F   DA+ F    E  +     +  
Sbjct: 345 RLRSYRELPLRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIF-CREEQIEDEILGILD 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +    G +   +   + P     S      A          K              
Sbjct: 404 LTLEMLSAFGFERYEVDLSTRPEKSVGSDAIWERATQALRSALEKKGLDYAVDEGGG--- 460

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    + S   ++    F    ++     
Sbjct: 461 -----------------AFYGPKIDIKIEDAIGRKWQCSTVQLD----FNLPERF----E 495

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   DG +   + +    +G++     V+   ++GK    P  +AP +++++NI    
Sbjct: 496 MEYVAEDGARHQPIMIHRAVLGSLERFFGVLIEHYEGKF---PPWLAPVQVAVMNIT--- 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   ++   L   G     D   E+IG +     L   P  +++G + V +  V +
Sbjct: 550 DRQAEYACQVEETLKNKGFRSLLDLRNEKIGFKIREHTLRRVPYLLVIGDREVENQTVAV 609

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +     MSL+  I       +
Sbjct: 610 RTRYSKDLGAMSLDAFIERLDADIA 634


>gi|256113621|ref|ZP_05454441.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|265994988|ref|ZP_06107545.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|262766101|gb|EEZ11890.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
          Length = 658

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D      P +      
Sbjct: 289 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDHVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 QINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|88810665|ref|ZP_01125922.1| threonyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88792295|gb|EAR23405.1| threonyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 641

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 153/450 (34%), Gaps = 49/450 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +++L  L+E    A+   H+ + +      + + + G+  W P G +    +   +R
Sbjct: 226 KALQHYLHALEE----AQRRDHRRLAKIQDLFHLQEEAPGMVFWHPNGWRVYLLLQDYLR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            + +  G  E+  P L    LW  SG +  +  +M        +     P +      IF
Sbjct: 282 AKLDAHGYREVRTPELVDRSLWERSGHWQKFRADMFTTESEK-RDYAVKPMNCPCHVQIF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T E  +      
Sbjct: 341 NQGLKSYRDLPLRLAEFGNCHRNEASGTLHGLMRVRNFVQDDAHIF-CTEEQIQSEVAGF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   + +   + P     +      A+    Q   ++       P E  
Sbjct: 400 LDLAEAVYRDFGFDEVIVALSTRPEQRVGADALWDKAEQALDQALRARRLDWEVKPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I L                             K    R  + G +      +S+P
Sbjct: 460 FYGPKIEL---------------------------SMKDSLGRVWQCGTM---QVDFSMP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A +   DG +   V +     G+      V+   + G    WP  +AP +  ++NI
Sbjct: 490 QRLGAQYVAEDGARLVPVMLHRAIFGSFERFIGVLIEHYGGA---WPVWLAPIQAVVLNI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                        I  RL++ G   + D   E+IG +     L   P  +IVG +     
Sbjct: 547 T---DRQGAYASGIEKRLAEHGFRAYGDLRNEKIGFKIREHTLQKVPYLLIVGERERESM 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ R       M L+  I   S   + 
Sbjct: 604 TVAVRTREGEDLGSMPLKAFIERLSGEVAQ 633


>gi|323351205|ref|ZP_08086861.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322122429|gb|EFX94140.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 647

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 172/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S  L+  SG ++ Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVGLYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYADFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++
Sbjct: 557 AHIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    + ++E +       ++ 
Sbjct: 617 RYGQKETHTIPVDEFVEQILADIASK 642


>gi|321312429|ref|YP_004204716.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|291485328|dbj|BAI86403.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320018703|gb|ADV93689.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 643

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/437 (20%), Positives = 168/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +       ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFIRTVRLIQDVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                  D  +T+ +   D M     S   +  D I  
Sbjct: 413 EDFGLSDYTFRLSYR--------------DPEDTEKYFDDDEMWNKAQSMLKEAMDEIGH 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  ++ + + +S   ++    F    ++      T+ G 
Sbjct: 459 D--YYEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTYIGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   H G    W   +AP +  +I +     V  D 
Sbjct: 509 DGKQHRPVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--AVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 564 AKKVQERLQREGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHR 441
             E +SL+E +  A   
Sbjct: 624 NSETISLDEFVKKAVAE 640


>gi|254447322|ref|ZP_05060789.1| threonyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198263461|gb|EDY87739.1| threonyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 637

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 160/451 (35%), Gaps = 49/451 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    AE   H+ + ++     + + + G+  W   G +    V   IR+  
Sbjct: 229 KAHLTMLEE----AEKRDHRKLAKSLDLFHMQEEAPGMVFWHDKGWQIYVQVQDYIRQLL 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW +SG +D +G  +      N +     P +      I+   
Sbjct: 285 RQHDYQEVHTPQVVDRVLWEKSGHWDKFGDMIFSTHSEN-RDYAVKPMNCPCHVQIYNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T +  +   +     
Sbjct: 344 LKSYRDLPLRMAEFGSCHRNEPSGTLHGLMRVRNFVQDDAHIF-CTEDQIQSEVSAFIDL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G + + +   + P            A+        +KD      P E   + 
Sbjct: 403 VFQVYKDFGFEEVQVALSTRPEERVGEDALWDKAENALEVALNNKDLDFTLQPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G I      +S+P  +
Sbjct: 463 PKIEFAL---------------------------KDCLGRVWQCGTI---QVDFSMPTRL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   DG +   V +    +G++     ++   H+G+  +W   +AP + +++NI   
Sbjct: 493 EADYVAEDGSRKTPVMLHRAILGSLERFIGILIEEHEGRFPVW---LAPVQAAILNITDK 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  EK    L   G  V  D   E+IG +     L   P   +VG + V +  V 
Sbjct: 550 ---QADFVEKARQTLENQGLRVVSDLRNEKIGFKIREHTLQRVPYLFVVGDREVENESVA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           ++ R       M+++E +            V
Sbjct: 607 VRTRSGEDLGTMTVDEAVQLIKRAAEQRETV 637


>gi|294501489|ref|YP_003565189.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351426|gb|ADE71755.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 645

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 169/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRLLEEAKERDHRKLGKELNLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEVSLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y  +M    + +++ ++  P +      +++  I SYR
Sbjct: 296 QHVYTPVLGSVELYKTSGHWEHYQDDMFPAMEMDNEDLVLRPMNCPHHMMVYKQGIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++      ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEEFIRVVRLVEAVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++   R                  D  +T+ +   D M     S   D  D + L
Sbjct: 415 KDFGFENYSFRLSYR--------------DPADTEKYFDDDAMWEKAQSMLKDAMDELDL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVKTALGKEETLSTVQLD----FLLPERF----DLTYIGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +     V  + 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSPT--VHLEY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G  V  D   E+IG +   A +   P  ++VG K V D  V ++     
Sbjct: 566 AKEVQEQLQLAGIRVELDSRDEKIGYKIREAQMQKIPYMLVVGDKEVEDKAVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYASHR 441
             E +  +  +      
Sbjct: 626 NSETVGFQAFLQNVKAE 642


>gi|284037110|ref|YP_003387040.1| threonyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816403|gb|ADB38241.1| threonyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 647

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 166/446 (37%), Gaps = 47/446 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      +   G+  WLP G    + +   +R+ Q R G
Sbjct: 237 YLFLLEEAKKRDHRKLGKELELFA-FSEKVGAGLPLWLPKGTVLRERLENFLRKAQVRAG 295

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P + S  L+V SG ++ YG++  +       ++  +  P +     +I+++  +
Sbjct: 296 YSPVVTPHIGSKQLYVTSGHWEKYGEDSFQPIRTPDPNEEFLLKPMNCPHHCEIYKTKPR 355

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+    L
Sbjct: 356 SYRDLPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFMKVIDLVL 414

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F+ LG      +                  D      +   D +     S   +    
Sbjct: 415 YVFNTLGFSDYSAQISLR--------------DPENKTKYIGSDDLWEKAESAIIEAAAE 460

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP-- 297
             L ++                E    +    K        +G  +  GT    Y+LP  
Sbjct: 461 KGLPTV---------------TELGEAAFYGPKLDFMVRDAIGRKWQLGTIQVDYNLPNR 505

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + GAD + H  V +     G+M    A++  +  G   +W   ++P +I+++ I  
Sbjct: 506 FELEYIGADNQKHRPVMIHRAPFGSMERFIAILIENSGGNFPLW---LSPDQIAILPI-- 560

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D    ++  L +     F D   E+IG +   A++   P  +IVG K  ++  V
Sbjct: 561 -SEKYEDYANDLFFSLQENDIRGFVDLRDEKIGRKIRDAEVNKVPYMLIVGEKEAAEGTV 619

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++ +  G    M + + I       
Sbjct: 620 SVRRKGQGDLGSMPIADFIQTFKREV 645


>gi|149182849|ref|ZP_01861310.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849464|gb|EDL63653.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 643

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 172/442 (38%), Gaps = 34/442 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ +
Sbjct: 232 KEHLRLLEEAKERDHRKIGKELNLFMN-SQKVGQGLPMWLPKGATIRRIIERYIVDKEEK 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + S DL+  SG +D Y + M  + D +++ ++  P +      I+++ I 
Sbjct: 291 LGYDHVYTPVMGSVDLYKTSGHWDHYQENMFPVMDMDNEQLVLRPMNCPHHMMIYKNSIH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 351 SYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHLF-VRPDQIKEEFKRVVRLVL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    L     R                  D  +T+ +   D M         +  D 
Sbjct: 410 EVYKDFDLNDYSFRLSYR--------------DPQDTEKYFDDDEMWNKAQQMLKEAMDE 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  +L + + +S   ++    F    ++      T+
Sbjct: 456 MEID--YFEAEGEAAFYGPKLDVQVKTALGKEETLSTVQLD----FLLPERF----DLTY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +     V 
Sbjct: 506 IGEDGKHHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--DVH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   L   G  V  D   E+IG +   A +   P  ++VG   + +  V ++  
Sbjct: 561 FDYAKKVQEELQAQGLRVELDSRDEKIGYKIREAQMSKIPYMLVVGDNEIQEEAVNVRKY 620

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                E +SL + +   +   +
Sbjct: 621 GEQKSETVSLSDFVQKVTDEVN 642


>gi|229190445|ref|ZP_04317445.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228593058|gb|EEK50877.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
          Length = 640

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYKYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVIALDVFVASIEEEIKNRK 639


>gi|168493529|ref|ZP_02717672.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183576436|gb|EDT96964.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 647

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELEHYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|146328703|ref|YP_001209437.1| threonyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|166223338|sp|A5EVK6|SYT_DICNV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146232173|gb|ABQ13151.1| threonyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 640

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 151/450 (33%), Gaps = 45/450 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           RSK  L        +AE   H+ + +      + + + G+  W   G      +   +R 
Sbjct: 224 RSKKELDDYLTQQAEAEKRDHRKIGKALDLFHLQEEAPGMVFWHAKGWTIYREIENYMRT 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +  + G  E+  P +    LW +SG +D +G  M      ++      P +      IF 
Sbjct: 284 KLRKYGYQEVQGPQILDRSLWEKSGHWDKFGGNMFTCC-IDNHDFAVKPMNCPGHVQIFN 342

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR LP  + +  +  R+E      G+MR R F+  D + F       +    +  
Sbjct: 343 QGLKSYRELPIRYAEFGICHRNEPSGTLHGIMRVRRFVQDDGHIFCAR-NQVRVEIERTC 401

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++   G K++ +   + P     S E    A+ G  +   +++      P E   
Sbjct: 402 RMVYEVYDDFGFKNVELALSTRPEKRVGSDEIWDEAERGLQEALEAQNLAFRLQPGEGAF 461

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   I                               K    R  + G +      +S+P 
Sbjct: 462 YGPKIEFTL---------------------------KDSLGRRWQCGTV---QLDFSMPA 491

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A +    G+    V +    +G++     ++   + G   +W   ++P +  ++ I 
Sbjct: 492 RLGAEYIDEHGEKQTPVMIHRAILGSLERFIGILIEQYAGNMPVW---LSPVQAMIMPIT 548

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D  + +  +    G     D   E+I  +     L   P  ++ G +    + 
Sbjct: 549 ---DTHADYVQNVMQKFIAAGIRAEIDLRNEKISYKIREHTLQRVPFLLVAGDREKQSNT 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + ++ R       M +  +I +  H     
Sbjct: 606 LSVRTRDGKELGVMEIATIIEHIRHLIETK 635


>gi|226944147|ref|YP_002799220.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259516344|sp|C1DF42|SYT_AZOVD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226719074|gb|ACO78245.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 640

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 150/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKLGKRLDLF--HTQEEAPGMVFWHPNGWTVYQVLEQYMRAVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y + M      + +     P +      ++   +KSY
Sbjct: 289 YLEIKTPQVVDRVLWEKSGHWANYAENMFTTESES-RDYAIKPMNCPCHVQVYNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T E  +           ++
Sbjct: 348 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEEQMQAESAAFIKLTRQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+        S        P E   +   I 
Sbjct: 407 YADFGFQDIQLKLSTRPERRVGSGELWDRAEEALAAALESAGLPYELQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  + A +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPVRLGAEY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +  H V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSENNERQHPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R
Sbjct: 551 GEFALEVERTLNQGGFRAKCDLRNEKIGFKIREHTLLKVPYLLVIGDREVETHSVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +E+     +   +  
Sbjct: 611 EGVDLGTMPVEQFREMLAQAVARR 634


>gi|77408338|ref|ZP_00785079.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77173019|gb|EAO76147.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 647

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 170/444 (38%), Gaps = 36/444 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   M++ +  +G+  WLP G      +   I +++  +
Sbjct: 229 YLKRREEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRELERYIVDKEIAS 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G   +  P + S + +  SG +D Y ++M    D  D +  +  P +     ++++ H+ 
Sbjct: 287 GYQHVYTPPMASVEFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHHVH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E      G+ R RE  + DA+ F +TPE  K  + K      
Sbjct: 347 SYRELPIRIAELGMMHRYEKSGALTGLQRVREMTLNDAHIF-VTPEQIKDEFLKALNLIA 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+    L     R                  D  +   +   D M     +   +  D 
Sbjct: 406 EIYEDFNLTDYRFRLSYR--------------DPEDKHKYYDNDEMWENAQAMLKEAMDD 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             L+    +     A      + ++  +L   + +S   ++    F    ++       +
Sbjct: 452 FGLD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DLKY 501

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG++H  + +   GI  M    A++  ++ G    W   +AP ++S+I I   ++  
Sbjct: 502 IGADGEEHRPIMIHRGGISTMERFTAILIETYKGAFPTW---LAPQQVSVIPIS--NEAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     DD  E++  +   A     P Q+IVG K + +  V ++  
Sbjct: 557 IDYAWEVARALKDRGIRAEVDDRNEKMQYKIRAAQTQKIPYQLIVGDKEMEEKAVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E  S+EE +       +  
Sbjct: 617 GSKATETKSIEEFVESILADIARK 640


>gi|228908133|ref|ZP_04071981.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228851551|gb|EEM96357.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 640

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 162/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +R  Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLRGIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++ 
Sbjct: 554 HEQYCSEVAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMESGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E + ++  +        N +
Sbjct: 614 YAEEKSEVVEIDVFVATIEEEIKNRK 639


>gi|315282482|ref|ZP_07870886.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613866|gb|EFR87606.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 640

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 173/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELDLFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     S      D 
Sbjct: 406 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQSMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MGMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 557 LNYAKGVQDKLQRAGLRSEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|148984063|ref|ZP_01817358.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923352|gb|EDK74465.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800452|emb|CBW33086.1| threonyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 647

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 174/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVVKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|254693779|ref|ZP_05155607.1| threonyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|261214058|ref|ZP_05928339.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|260915665|gb|EEX82526.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
          Length = 658

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 HINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|62289987|ref|YP_221780.1| threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699915|ref|YP_414489.1| threonyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024229|ref|YP_001934997.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|254689295|ref|ZP_05152549.1| threonyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254697431|ref|ZP_05159259.1| threonyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730329|ref|ZP_05188907.1| threonyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256257545|ref|ZP_05463081.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260545263|ref|ZP_05821004.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260883825|ref|ZP_05895439.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|73919775|sp|Q57D65|SYT_BRUAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123740930|sp|Q2YQ07|SYT_BRUA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689368|sp|B2S5S6|SYT_BRUA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62196119|gb|AAX74419.1| ThrS, threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616016|emb|CAJ11049.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase,
           class IIa:Threonyl-tRNA synthetase, class IIa:TGS
           domain:A [Brucella melitensis biovar Abortus 2308]
 gi|189019801|gb|ACD72523.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|260096670|gb|EEW80545.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260873353|gb|EEX80422.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
          Length = 658

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 HINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|254701818|ref|ZP_05163646.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 658

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 158/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K    + + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQKLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|306843943|ref|ZP_07476538.1| threonyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275698|gb|EFM57422.1| threonyl-tRNA synthetase [Brucella sp. BO1]
          Length = 658

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 160/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L  VG  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAVGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|260754807|ref|ZP_05867155.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260758029|ref|ZP_05870377.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260761852|ref|ZP_05874195.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|297248387|ref|ZP_06932105.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|260668347|gb|EEX55287.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260672284|gb|EEX59105.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674915|gb|EEX61736.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|297175556|gb|EFH34903.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 660

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 235 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 290

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 291 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 350

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 351 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 409

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 410 HINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 457 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 504

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 505 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 561

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 562 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 618

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 619 EKTVNMRRLGSRDQESMTLDEAIARLCEE 647


>gi|298503373|ref|YP_003725313.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238968|gb|ADI70099.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
          Length = 660

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 242 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 299

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 300 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 359

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 360 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 418

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 419 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 464

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 465 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 514

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 515 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 569

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 570 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 629

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 630 RYGQKETQTVSVDNFVQAILADIANK 655


>gi|229178727|ref|ZP_04306091.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228604885|gb|EEK62342.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
          Length = 640

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 162/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYKYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYILVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L            N +
Sbjct: 614 YGEEKSEVVTLNVFAASIEEEIKNRK 639


>gi|196043419|ref|ZP_03110657.1| threonyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196025728|gb|EDX64397.1| threonyl-tRNA synthetase [Bacillus cereus 03BB108]
          Length = 639

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYILVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 + + L+  +        N +
Sbjct: 614 YGEEKSDVIELDMFVESIKVEIKNRK 639


>gi|261752375|ref|ZP_05996084.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261742128|gb|EEY30054.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 660

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 158/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K    + + +R   
Sbjct: 235 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQKLVSYMRRRL 290

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 291 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 350

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 351 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 409

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 410 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 457 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 504

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 505 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 561

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 562 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 618

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 619 EKTVNMRRLGSRDQESMTLDEAIARLCEE 647


>gi|296332117|ref|ZP_06874581.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675488|ref|YP_003867160.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150888|gb|EFG91773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413732|gb|ADM38851.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 643

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 168/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +       ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFIRTVRLIQDVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                  D  +T+ +   D M     S   +  D I  
Sbjct: 413 EDFGLSDYTFRLSYR--------------DPEDTEKYFDDDEMWNKAQSMLKEAMDEIGH 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  ++ + + +S   ++    F    ++      T+ G 
Sbjct: 459 D--YYEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTYIGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   H G    W   +AP +  +I +     V  D 
Sbjct: 509 DGKQHRPVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--SVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 564 AKKVQERLQREGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHR 441
             E +SL++ +  A   
Sbjct: 624 NSETISLDDFVKKAVAE 640


>gi|182684576|ref|YP_001836323.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|182629910|gb|ACB90858.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 660

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 242 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 299

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 300 VSGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 359

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 360 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 418

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 419 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 464

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 465 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 514

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 515 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 569

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 570 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 629

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 630 RYGQKETQTVSVDNFVQAILADIANK 655


>gi|221232374|ref|YP_002511527.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|254783539|sp|B8ZM32|SYT_STRPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220674835|emb|CAR69409.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 647

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G  +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGAISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|251781963|ref|YP_002996265.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390592|dbj|BAH81051.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126789|gb|ADX24086.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 647

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 177/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 345 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIF-VTPEQIRDEFKRTLQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 404 IIDVYEDFNLTDYRFRLSYR--------------DPEDTHKYYDNDEMWENAQAMLKGAM 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 450 DDMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I   ++
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + +  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      S+E+ +       +  +RP
Sbjct: 615 RYGSKATHTESVEDFVENILVDIARKSRP 643


>gi|256159790|ref|ZP_05457533.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255048|ref|ZP_05460584.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261222239|ref|ZP_05936520.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|265998203|ref|ZP_06110760.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|260920823|gb|EEX87476.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|262552671|gb|EEZ08661.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
          Length = 658

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPKRFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|254470004|ref|ZP_05083408.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960315|gb|EEA95511.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 648

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 152/444 (34%), Gaps = 43/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        +   G+  W   G +   N+   +R   
Sbjct: 230 KAYLHMLEE----AEKRDHRKLGREMDLYHFQEEGPGVVFWHHKGWQLFQNLTNYMRRRL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E++ P +    LW  SG ++ Y + M      + +     P +      IF+  
Sbjct: 286 ED-DYQEVNAPQILDKALWETSGHWEWYRENMFATETEDHRVFAIKPMNCPGHVQIFKHG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R E      G+MR R F   DA+ F  T E      +K+   
Sbjct: 345 LKSYRDLPLRMAEFGAVSRYEPSGALHGLMRVRAFTQDDAHVF-CTEEQMAAECHKINDL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++   G + I ++  + P     S E    A+         +   +    S      
Sbjct: 404 IMSVYKDFGFEEIVVKLSTRPEKRVGSDEVWDHAE-----AVMGEVLKEIEANSGGKIKT 458

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
            I+            Y                       R  + G        ++LP   
Sbjct: 459 GILEGEGAFYGPKFEYTLRDA----------------IGREWQCGTT---QVDFNLPERF 499

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +  +DG K   V +     G++     ++  +  G   +W   +AP    +  I + 
Sbjct: 500 GAFYVDSDGEKKQPVMIHRAICGSLERFLGILIENFAGHFPLW---LAPQHFVVAAITSD 556

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  ++++A L K G     D   E+I  +         P+ + VG +   +  V 
Sbjct: 557 ---ADDYAKEVHAALKKAGLRGELDLRNEKINYKVREHSHAKIPVIIAVGKREAEEKTVS 613

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+   +  +  M+L+E +      
Sbjct: 614 IRRLGSRNQTAMTLDEAVASLRDE 637


>gi|299533556|ref|ZP_07046932.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298718462|gb|EFI59443.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 639

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 149/443 (33%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I +HS G   W P G      V   +R      G
Sbjct: 231 YLFRLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M    D   +     P +      IF+  IKSY
Sbjct: 289 YQEVKAPQILDKGLWEKTGHWDKYRENMFT-TDSEKREYALKPMNCPGHIIIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 348 RDLPLRFGEFGNCHRNEPTGSLHGIMRVRAFTQDDGHIF-CTEDQIQAEVTAFTSLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     + E    A+    +   +       +P E   +   I 
Sbjct: 407 YADFGFTNILYRLSTRPEKRIGTDEAWDKAENALAEGLRASGCEFEYLPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I          + A F G
Sbjct: 467 YTL---------------------------KDALGREWQCGTI-QVDPNMPERLDAEFVG 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCR 362
            DG+ H  + +    +G++     ++   H G    W   +AP + +++NI        +
Sbjct: 499 EDGERHRPIMLHRAILGSLERFIGILVEHHSGALPAW---LAPVQAAVLNITDAQADYAQ 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+   L      V  D   E+I  +     +   P  ++ G K  +   V ++ R 
Sbjct: 556 EVAQKLQKALPNQSLRVVTDLRNEKITYKIREHSMQKLPYILVAGDKEKAAGAVAVRARG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS++  I   +   +  
Sbjct: 616 NKDLGVMSVDAFIELLAKDIAAK 638


>gi|169831543|ref|YP_001717525.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638387|gb|ACA59893.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 635

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 153/446 (34%), Gaps = 46/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++   + +   RD      +L L +   H+   G   + P G    + +    REE  + 
Sbjct: 229 EHLFRLEEAKRRDHRRLGFELDLFS--FHEAGPGFPFFHPRGMVLRNELERFWREEHTKN 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  P +   +LW  SG +D Y + M      +D+     P +      ++RS + S
Sbjct: 287 GYLEIRTPIILRQELWERSGHWDHYRENMY-FTTIDDEKYAVKPMNCPGGILVYRSKLHS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ L  R EL     G+MR+R F   DA+ F   PE  +    ++      
Sbjct: 346 YRELPIRLGELGLVHRHELSGVLHGLMRARCFTQDDAHIF-CRPEQVEEEIVRIMDLTEY 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + ++      +   + P     S E    A     +    +         +   +   +
Sbjct: 405 FYRQVFGFDYHVELSTRPEKSLGSDEIWESATAALRRALEERAVNYKVNEGDGAFYGPKV 464

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSA 300
                                          +    R  + G I   F    K+      
Sbjct: 465 DF---------------------------HLRDCLGRTWQCGTIQVDFQMPEKF----EL 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG+ H  V +     G+M    A++     G   +W   +AP ++ ++ I     
Sbjct: 494 EYVGEDGQRHRPVMIHRVIYGSMERFIAILTEHFAGAFPVW---LAPVQVRILPIT---D 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++   L + G    +D   E++G +   A +L  P  +++G +      V ++
Sbjct: 548 RHAAYAQEVTEALLRAGVRAEFDGRNEKVGYKIREAQVLKVPYMLVIGDREAESRTVAVR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           HR  G    M L +            
Sbjct: 608 HRTAGDLGSMELNDFTGRLVREIGTR 633


>gi|228967672|ref|ZP_04128693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792048|gb|EEM39629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 645

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 176/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|218899729|ref|YP_002448140.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228903093|ref|ZP_04067229.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228910399|ref|ZP_04074214.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|218543438|gb|ACK95832.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228849165|gb|EEM94004.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228856502|gb|EEN01026.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 645

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 176/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|225857248|ref|YP_002738759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254783542|sp|C1CLX1|SYT_STRZP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225725171|gb|ACO21023.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 647

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 173/445 (38%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L + +E   RD      +L L   +  +  +G+  WLP G      +   I  ++  
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLFI-ISQEVGQGLPFWLPNGATIRRELERYIVNKELA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
           +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H+
Sbjct: 288 SGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHV 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +     
Sbjct: 348 HSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R                  D  +T  +   D M     +      D
Sbjct: 407 IDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAALD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + +N    +     A      + ++  +L + + +S   ++    F    ++       
Sbjct: 453 EMGVN--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DLK 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++ 
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NEK 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++ 
Sbjct: 558 HVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 + +S++  +       +N 
Sbjct: 618 YGQKETQTVSVDNFVQAILADIANK 642


>gi|312868227|ref|ZP_07728427.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311095972|gb|EFQ54216.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 647

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 172/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEEEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPEDKHKYFDNDEMWENAQRMLKAAV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMGVE--YYEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  E MS++  +       +N 
Sbjct: 617 RYGQKETETMSVDAFVELILADIANK 642


>gi|228941754|ref|ZP_04104301.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974678|ref|ZP_04135244.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981272|ref|ZP_04141572.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228778472|gb|EEM26739.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785081|gb|EEM33094.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817966|gb|EEM64044.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942359|gb|AEA18255.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 645

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 176/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|15459130|gb|AAL00276.1| Threonyl-tRNA synthetase 1 [Streptococcus pneumoniae R6]
          Length = 660

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 242 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 299

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 300 VSGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 359

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 360 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 418

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 419 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 464

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 465 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 514

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 515 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 569

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 570 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 629

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 630 RYGQKETQTVSVDNFVQAILADIANK 655


>gi|254719143|ref|ZP_05180954.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984137|ref|ZP_06096872.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838428|ref|ZP_07471273.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662729|gb|EEZ32990.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406568|gb|EFM62802.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 658

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|23501949|ref|NP_698076.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161619021|ref|YP_001592908.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843337|ref|YP_001627741.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254704361|ref|ZP_05166189.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254710151|ref|ZP_05171962.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254714150|ref|ZP_05175961.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716792|ref|ZP_05178603.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|256031646|ref|ZP_05445260.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256061156|ref|ZP_05451310.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256369496|ref|YP_003107004.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168776|ref|ZP_05755587.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|260566393|ref|ZP_05836863.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261218590|ref|ZP_05932871.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261317705|ref|ZP_05956902.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261321913|ref|ZP_05961110.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261325162|ref|ZP_05964359.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261755033|ref|ZP_05998742.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|261758257|ref|ZP_06001966.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988738|ref|ZP_06101295.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|38258386|sp|Q8G0L8|SYT_BRUSU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083599|sp|A9M582|SYT_BRUC2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083600|sp|B0CGM0|SYT_BRUSI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23347895|gb|AAN29991.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161335832|gb|ABX62137.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674060|gb|ABY38171.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|255999656|gb|ACU48055.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260155911|gb|EEW90991.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260923679|gb|EEX90247.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294603|gb|EEX98099.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261296928|gb|EEY00425.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261301142|gb|EEY04639.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261738241|gb|EEY26237.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261744786|gb|EEY32712.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|264660935|gb|EEZ31196.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 658

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|228958638|ref|ZP_04120356.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228801059|gb|EEM47958.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 640

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEQYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E  +L+  +       +N +
Sbjct: 614 YGEEKSEVTALDIFVATIEEEITNRK 639


>gi|195978510|ref|YP_002123754.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975215|gb|ACG62741.1| threonyl-tRNA synthetase ThrS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 655

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 178/449 (39%), Gaps = 36/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      +L L   +  +  +G+  WLP G      +   I +++  
Sbjct: 236 KAYLTRLEEAKERDHRKLGKELDLFM-VSQEVGQGLPFWLPNGATIRRTLERYITDKELA 294

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
           +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H+
Sbjct: 295 SGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHV 354

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +     
Sbjct: 355 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLF-VTPEQIQEEFQRALQLI 413

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R                  D  +T  +   D M     S      D
Sbjct: 414 IDVYEDFNLTDYRFRLSYR--------------DPKDTHKYYDNDEMWENAQSMLKAALD 459

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + ++    +     A      + ++  +L   + +S   ++    F    +++L    +
Sbjct: 460 EMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERFNL----S 509

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++ 
Sbjct: 510 YIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPRQVTVIPIS--NEA 564

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++ 
Sbjct: 565 HIDYAWEVAKTLRDHGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRR 624

Query: 421 RLTGIREDMSLEEVINYASHRFS-NNRPV 448
             +      ++   ++      +  +RP 
Sbjct: 625 YGSKATHTEAIAAFVDNILADIARKSRPA 653


>gi|332184284|gb|AEE26538.1| Threonyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 634

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 158/447 (35%), Gaps = 49/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWEKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +     +P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELLPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G K   V +    +G++     ++   + G   +W   +APF+++++ I  +  
Sbjct: 494 TYIDKNGDKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPFQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFTMLEKNGIRTKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                    MS+++   +   +    +
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAKK 634


>gi|225852573|ref|YP_002732806.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256263936|ref|ZP_05466468.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|254783511|sp|C0RJ44|SYT_BRUMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225640938|gb|ACO00852.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|263094080|gb|EEZ18002.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
          Length = 658

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 289 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 QINDHILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|326409092|gb|ADZ66157.1| threonyl-tRNA synthetase [Brucella melitensis M28]
          Length = 660

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 235 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 290

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 291 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 350

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 351 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 409

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 410 QINDHILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 457 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 504

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 505 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 561

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 562 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 618

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 619 EKTVNMRRLGSRDQESMTLDEAIARLCEE 647


>gi|297617667|ref|YP_003702826.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145504|gb|ADI02261.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 636

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 146/442 (33%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   ++     G   +LP G    + +    R+E  + G
Sbjct: 231 YLYKLEEAKKRDHRRLGRELGLF--VVLDEGPGFPFFLPKGMIIRNELENFWRQEHVKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG ++ Y + M      +++     P +      +++ ++ SY
Sbjct: 289 YQEIKTPIILNRSLWEKSGHWEHYRENMY-FTTIDEEDYAVKPMNCPGGILVYKQNLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R E      G+MR R F   DA+ F L P         +       
Sbjct: 348 RELPIRLGELGLVHRHEKSGVLHGLMRVRAFTQDDAHIFML-PSQITQEIKGVIDMVDHF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     +   + P     S E    A     Q    K                   
Sbjct: 407 YRLFGFSY-HVELSTKPEKAMGSDEIWEKATGALRQALEEKGME---------------- 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H     D          R  + G I             T+ G
Sbjct: 450 -YKINEGDGAFYGPKIDFHLRDSLD----------RTWQCGTI-QLDFLMPEKFDLTYVG 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     ++     G    W   +AP ++ +I I    +    
Sbjct: 498 EDGEKHRPVMIHRVIYGSLERFIGILTEHFGGAFPTW---LAPVQVRIIPIT---ERHHG 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A   + G  V  D   E++G +     L   P  ++VG K   +  V ++ R  
Sbjct: 552 YAVELEAGFREAGLRVESDLRSEKVGYKIREGQLQRIPYLLVVGDKETENKTVSVRKRKE 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      + E +N      +  
Sbjct: 612 GDLGAQPVAEFLNRIKKEIAGK 633


>gi|126651397|ref|ZP_01723604.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591926|gb|EAZ86009.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 643

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 178/443 (40%), Gaps = 34/443 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFT-TSQKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++    R E+     G+ R R   + DA+ F + P+  K  + K+    L
Sbjct: 351 SYRSLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIF-VRPDQIKAEFQKVVQLIL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    L     R                  D  +T+ + + D M     S   +  D 
Sbjct: 410 EVYKDFDLNDYSFRLSYR--------------DPADTEKYFNDDAMWEKAQSMLKEAMDE 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + L+    +     A      + ++  ++ + + +S   ++    F    ++      ++
Sbjct: 456 LGLD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLSY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +   ++  
Sbjct: 506 VGEDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVEVIPVS--NEAH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V  S V ++  
Sbjct: 561 FDYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEASGVNVRRY 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            +   E +S E  +       + 
Sbjct: 621 GSKDSETISFENFLAAIKAEITK 643


>gi|264679166|ref|YP_003279073.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209679|gb|ACY33777.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 687

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 149/443 (33%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I +HS G   W P G      V   +R      G
Sbjct: 279 YLFRLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNG 336

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M    D   +     P +      IF+  IKSY
Sbjct: 337 YQEVKAPQILDKGLWEKTGHWDKYRENMFT-TDSEKREYALKPMNCPGHIIIFKQGIKSY 395

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 396 RDLPLRFGEFGNCHRNEPTGSLHGIMRVRAFTQDDGHIF-CTEDQIQAEVTAFTSLLQKV 454

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     + E    A+    +   +       +P E   +   I 
Sbjct: 455 YADFGFTNILYRLSTRPEKRIGTDEAWDKAENALAEGLRASGCEFEYLPGEGAFYGPKIE 514

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I          + A F G
Sbjct: 515 YTL---------------------------KDALGREWQCGTI-QVDPNMPERLDAEFVG 546

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCR 362
            DG+ H  + +    +G++     ++   H G    W   +AP + +++NI        +
Sbjct: 547 EDGERHRPIMLHRAILGSLERFIGILVEHHSGALPAW---LAPVQAAVLNITDAQADYAQ 603

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+   L      V  D   E+I  +     +   P  ++ G K  +   V ++ R 
Sbjct: 604 EVAQKLQKALPNQSLRVVTDLRNEKITYKIREHSMQKLPYILVAGDKEKAAGAVAVRARG 663

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS++  I   +   +  
Sbjct: 664 NKDLGVMSVDAFIELLAKDIAAK 686


>gi|167626332|ref|YP_001676832.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189083609|sp|B0TY89|SYT_FRAP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167596333|gb|ABZ86331.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 635

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 155/447 (34%), Gaps = 49/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R    +
Sbjct: 231 YLHMLEE----AEKRDHRKIGKALDLFHFQEDSPGIAFWHDNGVRIWREVEDYMRASNKK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 287 YGCGEIRTPLIADFSLWEKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G+MR R F   D + F   PE  +     M     
Sbjct: 346 SYRDLPIRMAEFGIVHRNEPSGSLHGLMRVRSFTQDDGHIFCA-PEQVEEEVILMVKQCF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P     + E    ++        + +     +P E   +   
Sbjct: 405 EVYKDFGFNDFTVKIALRPENRIGNDETWDKSEQMLKNALDANNVAYELLPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 465 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPDRLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G K   V +    +G++     ++   + G   +W   + P +++++ I  H  
Sbjct: 495 TYIDKNGNKQVPVMLHRAIVGSLERFIGMLIEHYAGNMPLW---LTPVQVAVMGISNH-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C+K++  L K G     D   E+IG +     LL  P  VI+G        V ++
Sbjct: 550 -QDEYCQKVFETLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKSEQEQEIVTVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                    MS+ +   + + +    +
Sbjct: 609 KHNGEDLGQMSIGDFCAFLNEQIEAKK 635


>gi|313159213|gb|EFR58586.1| threonine--tRNA ligase [Alistipes sp. HGB5]
          Length = 650

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 171/454 (37%), Gaps = 44/454 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD       L L      +  +G+  WLP G    D +   +R  Q 
Sbjct: 227 LDEYLVMMEEAKKRDHRKLGKDLELFC-FSQRVGQGLPLWLPKGAALRDRLEQFLRNVQK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G  ++  P + + +L+V SG Y  YGK+  +        +  +  P +     +I+RS
Sbjct: 286 EYGYQQVITPHIGNKELYVTSGHYAKYGKDSFQPIHTPIEGEEYLLKPMNCPHHCEIYRS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP    +    +R E      G+ R R F   DA+ F + P+     + ++  
Sbjct: 346 KPRSYKELPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-VRPDQLLEEFERVID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L IF  L   +   +                  D    + +   D       S     
Sbjct: 405 IVLYIFKTLKFDNYTAQISLR--------------DPNNKEKYIGSDENWEKAESAIMQA 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            +   LN++VE   A +                  K    R  ++G I      Y+LP  
Sbjct: 451 AEEKGLNTVVEYGEAAFYGPKLDF---------MVKDAIGRKWQLGTI---QVDYNLPER 498

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+KGAD K H  + +     G+M    AV+     GK  +W   ++P ++ ++ I  
Sbjct: 499 FDLTYKGADDKLHRPIMIHRAPFGSMERFVAVLLEHTGGKFPLW---LSPQQVVVLPI-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D  +++   L++       DD  E+IG +    +L   P  +IVG K  ++  V
Sbjct: 554 -SEKFNDYAQQVAEYLNRSDVRTEVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLV 612

Query: 417 EIKHRLTGIREDMSLEEVINYA----SHRFSNNR 446
            ++ +  G +  M+LE   ++           N+
Sbjct: 613 SVRAQGEGDKGQMTLEGFRDFIAGLVKEEIEANK 646


>gi|25010739|ref|NP_735134.1| threonyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77410759|ref|ZP_00787117.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|73919827|sp|Q8E693|SYT_STRA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23095093|emb|CAD46328.1| theronyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77163138|gb|EAO74091.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 647

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 170/444 (38%), Gaps = 36/444 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   M++ +  +G+  WLP G      +   I +++  +
Sbjct: 229 YLKRREEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRELERYIVDKEIAS 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G   +  P + S + +  SG +D Y ++M    D  D +  +  P +     ++++ H+ 
Sbjct: 287 GYQHVYTPPMASVEFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHHVH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E      G+ R RE  + DA+ F +TPE  K  + K      
Sbjct: 347 SYRELPIRIAELGMMHRYEKSGALTGLQRVREMTLNDAHIF-VTPEQIKDEFLKALNLIA 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+    L     R                  D  +   +   D M     +   +  D 
Sbjct: 406 EIYEDFNLTDYRFRLSYR--------------DPEDKHKYYDNDEMWENAQAMLKEAMDD 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             L+    +     A      + ++  +L   + +S   ++    F    ++       +
Sbjct: 452 FGLD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DLKY 501

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG++H  + +   GI  M    A++  ++ G    W   +AP ++S+I I   ++  
Sbjct: 502 IGADGEEHRPIMIHRGGISTMERFTAILIETYKGAFPTW---LAPQQVSVIPIS--NEAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     DD  E++  +   A     P Q+IVG K + +  V ++  
Sbjct: 557 IDYAWEVARVLKDRGIRAEVDDRNEKMQYKIRAAQTQKIPYQLIVGDKEMEEKAVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E  S+EE +       +  
Sbjct: 617 GSKATETKSIEEFVESILADIARK 640


>gi|229115852|ref|ZP_04245250.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228667595|gb|EEL23039.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
          Length = 640

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 161/445 (36%), Gaps = 38/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMGQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++      F   Y       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDV---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               + K   V +    +G++    A++     G    W   VAP ++ +I +   + V 
Sbjct: 503 ---KNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAVH 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++  +L++ G  +  D   E++G +   A +   P  +++G K + +  V ++  
Sbjct: 555 VQYANEVADKLAQAGVRIERDVRDEKLGYKIREAQMQKIPYVLVIGDKEMENGSVNVRKY 614

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                E ++L+           N +
Sbjct: 615 GEEKSEVVALDVFAASMEEEIKNRK 639


>gi|221320079|ref|ZP_03601373.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
          Length = 643

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 90/437 (20%), Positives = 167/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +       ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFIRTVRLIQDVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                  D  +T+ +   D M     S   +  D I  
Sbjct: 413 EDFGLSDYTFRLSYR--------------DPEDTEKYFDDDEMWNKAQSMLKEAMDEIGH 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  ++ + + +S   ++    F    ++      T+ G 
Sbjct: 459 D--YYEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTYIGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   H G    W   +AP +  +I +     V  D 
Sbjct: 509 DGKQHRPVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--AVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL   G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 564 AKKVQERLQCEGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHR 441
             E +SL+E +  A   
Sbjct: 624 NSETISLDEFVKKAVAE 640


>gi|308233449|ref|ZP_07664186.1| threonyl-tRNA synthetase [Atopobium vaginae DSM 15829]
 gi|328944509|ref|ZP_08241970.1| threonine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327490910|gb|EGF22688.1| threonine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 592

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 159/437 (36%), Gaps = 44/437 (10%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +AE   H+ + R     M+++   G   WLP G +  + +    +E Q + G  ++  P
Sbjct: 189 AEAEKRDHRKIGREMDLFMVNEAGPGFPFWLPNGMRIRNALMNYWQEMQEKFGYEQIQTP 248

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + S  LW  SG +D Y + M      +++     P +      ++ +  +SYR+LP   
Sbjct: 249 VILSRKLWETSGHWDHYKENMYTTK-IDEEDFAIKPMNCPGACLVYMNKPRSYRDLPLKL 307

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  L  R EL+    G+ R REF   DA+ F + P+       ++       + + G  
Sbjct: 308 AEAGLDHRHELKGTLHGLFRVREFTQDDAHLF-IRPDQICDEVAEVTHLITAYYKQFGFP 366

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A+ G      +          +   +   I        
Sbjct: 367 Y-KVELSTRPENSMGSDEDWKTAEDGLRNALETMGLEYTINEGDGAFYGPKIDF------ 419

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                                  K    R  + G I     ++    +  +   DG K  
Sbjct: 420 ---------------------HLKDCLGRTWQCGTI-QLDFQFPHNFNLEYVDKDGQKKR 457

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + +   G G+      ++   ++GK  +W   +AP ++ ++ +    +  R    ++  
Sbjct: 458 PIMIHRAGFGSFERFIGMLIEQYEGKFPVW---LAPLQVKVLPV---SEKTRAYARELTQ 511

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +L  +   V  DD  E+IG +   A  +   P  +IVG +      + ++ R    ++  
Sbjct: 512 KLRDLKIRVKLDDRDEKIGYKIREARSIDRVPYMLIVGEQEAQAGNISVRDRTNTTKQY- 570

Query: 430 SLEEVINYASHRFSNNR 446
           + ++ +     + S+ +
Sbjct: 571 AFDDFVALLQAQISSRQ 587


>gi|16079947|ref|NP_390773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310836|ref|ZP_03592683.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315161|ref|ZP_03596966.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221324361|ref|ZP_03605655.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|135175|sp|P18255|SYT1_BACSU RecName: Full=Threonyl-tRNA synthetase 1; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|143766|gb|AAA22864.1| (thrSv) (EC 6.1.1.3) [Bacillus subtilis]
 gi|1769999|emb|CAA99608.1| threonyl-tRNA-synthetase [Bacillus subtilis]
 gi|2293284|gb|AAC00362.1| threonine tRNA synthetase [Bacillus subtilis]
 gi|2635360|emb|CAB14855.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 643

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 90/437 (20%), Positives = 167/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +       ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFIRTVRLIQDVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                  D  +T+ +   D M     S   +  D I  
Sbjct: 413 EDFGLSDYTFRLSYR--------------DPEDTEKYFDDDEMWNKAQSMLKEAMDEIGH 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  ++ + + +S   ++    F    ++      T+ G 
Sbjct: 459 D--YYEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTYIGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   H G    W   +AP +  +I +     V  D 
Sbjct: 509 DGKQHRPVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--AVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL   G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 564 AKKVQERLQCEGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHR 441
             E +SL+E +  A   
Sbjct: 624 NSETISLDEFVKKAVAE 640


>gi|120611523|ref|YP_971201.1| threonyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|166223312|sp|A1TR39|SYT_ACIAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120589987|gb|ABM33427.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidovorax
           citrulli AAC00-1]
          Length = 639

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 152/435 (34%), Gaps = 39/435 (8%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R      I +HS G   W P G      V   +R+     G  E+  P 
Sbjct: 237 EAEKRDHRRLGRELDLFHIDEHSPGTVFWHPKGWTIWQGVEQYMRQVYRDNGYQEVKGPQ 296

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW ++G +D Y + M              P +      IF   +KSYR+LP  + 
Sbjct: 297 ILDKHLWEKTGHWDKYRENMFTTESEK-HDYALKPMNCPGHILIFNQGVKSYRDLPLRYG 355

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   D + F  T +  +           +++   G   
Sbjct: 356 EFGQCHRNEPTGGLHGIMRVRAFTQDDGHIF-CTEDQIQQECINFTALLQKVYKDFGFTD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I  +  + P     S E    A+    +   +          +   +   +         
Sbjct: 415 IIYKVATRPEKRIGSEESWDKAENALIESLKASGCDYQIAVGDGAFYGPKLEY------- 467

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-Y 311
                         L D++  + +     ++       G        A + G DG+ H  
Sbjct: 468 -------------TLRDAIGRHWQCGTIQVDPSMPERLG--------AEYVGEDGQRHRP 506

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYA 370
           + +    +G++     ++   H G   +W   +AP +++++NI  A D  CR+   K+  
Sbjct: 507 IVLHRAIVGSLERFIGILIEQHAGALPVW---LAPVQVAVLNITGAQDDYCREIAAKLQK 563

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  D   E+I  +     L   P  ++VG K  +   V ++ R       M 
Sbjct: 564 ALPNQGLRVELDLRNEKITYKIREHSLQKLPYILVVGDKEKAAGAVAVRARGNRDLGVMP 623

Query: 431 LEEVINYASHRFSNN 445
           LE  I+      ++ 
Sbjct: 624 LEAFISLIGQDIADK 638


>gi|22536875|ref|NP_687726.1| threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76787804|ref|YP_329459.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76799413|ref|ZP_00781564.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77405954|ref|ZP_00783034.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77413516|ref|ZP_00789706.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|73919828|sp|Q8E0L9|SYT_STRA5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771973|sp|Q3K1Z4|SYT_STRA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22533725|gb|AAM99598.1|AE014224_1 threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76562861|gb|ABA45445.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76585236|gb|EAO61843.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77160460|gb|EAO71581.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77175465|gb|EAO78254.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 647

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 170/444 (38%), Gaps = 36/444 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   M++ +  +G+  WLP G      +   I +++  +
Sbjct: 229 YLKRREEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRELERYIVDKEIAS 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G   +  P + S + +  SG +D Y ++M    D  D +  +  P +     ++++ H+ 
Sbjct: 287 GYQHVYTPPMASVEFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHHVH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E      G+ R RE  + DA+ F +TPE  K  + K      
Sbjct: 347 SYRELPIRIAELGMMHRYEKSGALTGLQRVREMTLNDAHIF-VTPEQIKDEFLKALNLIA 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+    L     R                  D  +   +   D M     +   +  D 
Sbjct: 406 EIYEDFNLTDYRFRLSYR--------------DPEDKHKYYDNDEMWENAQAMLKEAMDD 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             L+    +     A      + ++  +L   + +S   ++    F    ++       +
Sbjct: 452 FGLD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DLKY 501

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG++H  + +   GI  M    A++  ++ G    W   +AP ++S+I I   ++  
Sbjct: 502 IGADGEEHRPIMIHRGGISTMERFTAILIETYKGAFPTW---LAPQQVSVIPIS--NEAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     DD  E++  +   A     P Q+IVG K + +  V ++  
Sbjct: 557 IDYAWEVARVLKDRGIRAEVDDRNEKMQYKIRAAQTQKIPYQLIVGDKEMEEKAVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E  S+EE +       +  
Sbjct: 617 GSKATETKSIEEFVESILADIARK 640


>gi|296876104|ref|ZP_06900158.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296432815|gb|EFH18608.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 647

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 172/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEEEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPEDKHKYFDNDEMWENAQRMLKAAV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMGVE--YYEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKQLRDRGVRADVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  E MS++  +       +N 
Sbjct: 617 RYGQKETETMSVDAFVELILTDIANK 642


>gi|240850680|ref|YP_002972080.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267803|gb|ACS51391.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 658

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 163/447 (36%), Gaps = 43/447 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        +   G+  W   G K   N+   +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGMIFWHKKGWKMFQNLINYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M ++        +       P +      
Sbjct: 289 DDHQYAEVNAPQVLDRSLWEISGHWGWYKENMFKVIPVAENSDHGNVYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRGFTQDDAHIF-CTDEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G K I ++  + P     S      A++           M+  + + 
Sbjct: 408 SINDLILSTYADFGFKEISLKLSTRPEKRVGSDALWDHAES----------IMESVLKTI 457

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            T F   I  + +  +     A         L D++    +     I+    F    ++ 
Sbjct: 458 ETKFAGQIKTSILPGEG----AFYGPKFEYTLKDAIGREWQCGTTQID----FNLPERF- 508

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +   D  K   V +     G+M     ++  +  G   +W   +AP ++ +  I
Sbjct: 509 ---GAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLW---LAPEQVVVATI 562

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      +  +KI A+L  +G     D   E+I  +     L   P+ ++ G +    +
Sbjct: 563 TS---EANEYAQKITAKLRAIGLSATIDLRNEKINYKIREHSLQKVPVILVCGKREAETN 619

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++   +  +  +S+E+VI   S+ 
Sbjct: 620 SVNMRRLGSTNKTLLSVEDVIKQLSNE 646


>gi|326538797|gb|ADZ87012.1| threonyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 661

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 236 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 291

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 292 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 351

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 352 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 410

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 411 QINDHILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 457

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 458 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 505

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 506 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 562

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 563 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 619

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 620 EKTVNMRRLGSRDQESMTLDEAIARLCEE 648


>gi|116872988|ref|YP_849769.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458497|sp|A0AJ08|SYT_LISW6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116741866|emb|CAK20990.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 640

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 173/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R
Sbjct: 228 KEFIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 287 LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 347 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 406 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 452 MGMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 501

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 502 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + +    V ++  
Sbjct: 557 LDYSKGVQDKLQRAGLRSEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMEAGSVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 617 GSKDSETMDLDAFIAQVVAEVSKY 640


>gi|295706837|ref|YP_003599912.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804496|gb|ADF41562.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 645

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 168/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRLLEEAKERDHRKLGKELNLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEVSLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y  +M    + +++ ++  P +      +++  I SYR
Sbjct: 296 QHVYTPVLGSVELYKTSGHWEHYQDDMFPAMEMDNEDLVLRPMNCPHHMMVYKQGIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++      ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEEFIRVVRLVEAVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++   R                  D  +T+ +   D M     S   D  D + L
Sbjct: 415 KDFGFENYSFRLSYR--------------DPADTEKYFDDDAMWEKAQSMLKDAMDELDL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVKTALGKEETLSTVQLD----FLLPERF----DLTYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +     V    
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSPT--VHLQY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G  V  D   E+IG +   A +   P  ++VG K V D  V ++     
Sbjct: 566 AKEVQEQLQLAGIRVELDSRDEKIGYKIREAQMQKIPYMLVVGDKEVEDKAVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYASHR 441
             E +  +  +      
Sbjct: 626 NSETVDFQAFLQNVKAE 642


>gi|325288434|ref|YP_004264615.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963835|gb|ADY54614.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 636

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 153/443 (34%), Gaps = 41/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   + +   RD      +L L +  +H    G   + P G    + +    R+E  + G
Sbjct: 231 FLFKLEEAKRRDHRKLGMELDLFS--LHDEGPGFPFFHPKGMVIRNLLEDFWRKEHFKRG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + +  LW +SG +D Y + M      +       P +      ++++ ++SY
Sbjct: 289 YVEIKTPIILNRALWEQSGHWDHYKENMY-FTKIDGVDFAVKPMNCPGGMIMYKTKLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G++R R F   DA+ F L P   K    ++       
Sbjct: 348 RDLPIRCGELGLVHRHELSGALHGLLRVRNFTQDDAHIFML-PSQIKDEIIRVINLVDDF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   +A    T+   + +      P +   +   I 
Sbjct: 407 YKVFGFEY-HVEVSTRPENSMGSDEEWEMATRALTEALEALNMSYKVNPGDGAFYGPKID 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I     +        + G
Sbjct: 466 F---------------------------HLKDCLDRTWQCGTI-QLDFQMPEKFDLNYIG 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++    A++   + G   +W   +AP ++ ++ I        +
Sbjct: 498 EDGEKHRPVMIHRVVYGSIERFIALLTEHYAGAFPVW---LAPVQVRILPI---SDKHSE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L ++      D+  E+I  +   A     P  ++VG +   +  + ++    
Sbjct: 552 YAAKVAETLKEMDIRTEIDERREKISYKVREAQTEKVPFALVVGDQEAEEGSLAVRRYGE 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MS EE +          +
Sbjct: 612 QNTVKMSREEFLATIIEEIQTKK 634


>gi|319651798|ref|ZP_08005923.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396450|gb|EFV77163.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 643

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 176/439 (40%), Gaps = 34/439 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G     N+   I +++ R G 
Sbjct: 235 LRLLEEAKERDHRKIGKELNLFMN-SQKVGQGLPMWLPKGATIRRNIERYIVDKEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S DL+  SG +D Y ++M  + + +++ ++  P +      I+++ I SYR
Sbjct: 294 DHVYTPIMGSVDLYKTSGHWDHYQEDMFPVMEMDNEQLVLRPMNCPHHMMIYKNGIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEEFKRVVHLILEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                  D  +T+ +   D M     +   +  D I L
Sbjct: 413 KDFDINDYSFRLSYR--------------DPQDTEKYFDDDEMWEKAQAMLKEAMDEIGL 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      T+   
Sbjct: 459 D--YFEAEGEAAFYGPKLDVQVKTALGKDETLSTVQLD----FLLPERF----DLTYVAE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +     +  D 
Sbjct: 509 DGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--DIHFDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G  V  DD  E+IG +   A +   P  ++VG   V++  V ++     
Sbjct: 564 AKQVREQLQAEGFRVELDDRNEKIGYKIREAQMQKTPYMLVVGDNEVAEKAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHRFS 443
             E +S E+ I+       
Sbjct: 624 KSETVSFEDFISALKAEVK 642


>gi|326317187|ref|YP_004234859.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374023|gb|ADX46292.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 639

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 157/447 (35%), Gaps = 43/447 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++  ++E    AE   H+ + R      I +HS G   W P G      V   +R+  
Sbjct: 229 EAYIKRIEE----AEKRDHRRLGRELDLFHIDEHSPGTVFWHPKGWTIWQGVEQYMRQVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y + M              P +      IF   
Sbjct: 285 RDNGYQEVKGPQILDKHLWEKTGHWDKYRENMFTTESEK-HDYALKPMNCPGHILIFNQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP  + +     R+E      G+MR R F   D + F  T +  +         
Sbjct: 344 VKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRAFTQDDGHIF-CTEDQIQQECINFTSL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     S E    A+    +   +          +   + 
Sbjct: 403 LQKVYKDFGFTDIIYKVATRPEKRIGSEESWDKAENALIESLKASGCDYQIAVGDGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                       L D++  + +     ++       G        A
Sbjct: 463 PKLEY--------------------TLRDAIGRHWQCGTIQVDPSMPERLG--------A 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHD 358
            + G DG+ H  + +    +G++     ++   H G   +W   +AP +++++NI  A D
Sbjct: 495 EYVGEDGQRHRPIVLHRAIVGSLERFIGILIEQHAGALPVW---LAPVQVAVLNITGAQD 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             CR+   K+   L   G  V  D   E+I  +     L   P  ++VG K  +   V +
Sbjct: 552 DYCREIAAKLQKALPNQGLRVELDLRNEKITYKIREHSLQKLPYILVVGDKEKAAGAVAV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M LE  I+      ++ 
Sbjct: 612 RARGNRDLGVMPLEAFISLIGQDIADK 638


>gi|260596616|ref|YP_003209187.1| prolyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260215793|emb|CBA28231.1| Prolyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 572

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 126/225 (56%), Positives = 164/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR D+A + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWEQYGPELLRFVDRGDRAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQQTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +  S 
Sbjct: 181 YSKIFTRMGLDFRPVQADTGSIGGSASHEFQVLAQSGEDDIVFSD 225



 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 3/201 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPQVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQVLTMGCYGIGVTRVVAAAIEQNHDDRGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV  DD  E+ G  FA  +L+G P  V++G + + + ++E
Sbjct: 486 SFRVQELAEKLYAELRAKGIDVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYA 438
            K+R  G ++ +   ++++Y 
Sbjct: 546 YKYRRDGEKKMIKTGDILDYL 566


>gi|288553677|ref|YP_003425612.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288544837|gb|ADC48720.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 643

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 169/434 (38%), Gaps = 33/434 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L +   +  +  +G+  WLP G      +   I +++ R G   +  P
Sbjct: 241 AKERDHRKLGKELGIFA-LSQKVGQGLPLWLPKGATVRRVIERYIVDKEERLGYQHVYTP 299

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L S++L+  SG +D Y  +M  + +R+++  +  P +      +++  ++SYR LP   
Sbjct: 300 ILGSSELYKTSGHWDHYKDDMFPVMERDNEEFVLRPMNCPHHMMVYKQDMRSYRQLPLRI 359

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++ +  R E+     G+ R R   + DA+ F   P+  K  + ++      ++   GL 
Sbjct: 360 AELGMMHRYEMSGAVSGLQRVRGMTLNDAHIF-CRPDQIKEEFLRVVYLIQEVYKDFGLD 418

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               R                  D  + + +   D M     S   +  D + ++    +
Sbjct: 419 DYKFRLSYR--------------DPEDKEKYFDDDAMWEKAQSMLKEAMDELDVD--YYE 462

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      + ++  +L +++ +S   ++    F    ++      T+ G DG+ H 
Sbjct: 463 AEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYVGEDGQQHR 514

Query: 312 VQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             +   G+ + M    A +   + G    W   +AP ++ +I +     V  D  +K+  
Sbjct: 515 PVVVHRGVVSTMERFVAFLLEEYKGAFPTW---LAPVQVQVIPVSP--DVHLDYAKKVQD 569

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G  V  D+  E+IG +   A +   P  +++G K +    V I+       E   
Sbjct: 570 ALQQAGARVEIDERNEKIGYKIREAQMQKIPYMLVLGDKEMESGAVNIRKYGEQASESKE 629

Query: 431 LEEVINYASHRFSN 444
           L+  I+  +     
Sbjct: 630 LQAFISDLAEELKK 643


>gi|83309439|ref|YP_419703.1| threonyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|123740560|sp|Q2WAI1|SYT_MAGMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82944280|dbj|BAE49144.1| Threonyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 638

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 154/442 (34%), Gaps = 48/442 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG-MIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + HQ   + G   W   G      V + +R     
Sbjct: 233 YLHMLEE----AEKRDHRRLGREMELFHQQEEAAGSVFWHKKGWTLYRAVESYMRRRLEA 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P L    LW  SG  D + + M  +  ++++ +   P +      IFR  IK
Sbjct: 289 NNYEEVKTPQLVDFSLWEASGHADKFSESMFTIKTQDERHLAVKPMNCPCHVQIFRQGIK 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F  T +              
Sbjct: 349 SYRDLPLRMAEFGSCHRYEPSGALHGIMRVRAFTQDDAHIF-CTEDQITSETIAFCQLLK 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     S E    A++   +   +        P E   +   
Sbjct: 408 EVYTDFGFTDVRVKFSDRPAKRAGSDETWDKAESALLEASKAAGLETVLNPGEGAFYGPK 467

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               +    R  + G        + LP  + A
Sbjct: 468 LEF---------------------------VLRDAIGRDWQCGT---LQVDFVLPERLDA 497

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG K   V +    +G+      ++  +  G+  +W   +AP ++ +  I +   
Sbjct: 498 AYVAEDGAKKRPVMLHRAILGSFERFLGILIENFAGRFPLW---LAPTQVVVATIVS--- 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++ A L   G  V  D   E+I  +     +   P+ ++VG +     +V I+
Sbjct: 552 EADDFAREVEATLKAAGLRVELDLRNEKINYKVREHSVAKVPVMLVVGKREAESRQVAIR 611

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              +  +E ++L++ +   +  
Sbjct: 612 RLGSQNQEIVALDQAVATLAAE 633


>gi|300778181|ref|ZP_07088039.1| threonine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300503691|gb|EFK34831.1| threonine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 639

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 165/452 (36%), Gaps = 54/452 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L +      +   G+  WLP G      +   + + Q 
Sbjct: 226 LTEYLERLEEAKRRDHRKLGKELGIFA-FSEKVGAGLPLWLPKGTALRRKLENFLSDAQK 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P + + +L+V SG +D YG++  +        +  +  P +     +I+++
Sbjct: 285 KGGYEFVMSPHIGAKELYVTSGHWDKYGEDSFQPIKTPNEGEEFLLKPMNCPHHCEIYKT 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+  
Sbjct: 345 SQWSYRDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CTPDQLSEEFEKVID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
             L +F  LG +    +            IG D + E    A     +    K  +++  
Sbjct: 404 LTLYVFKSLGFEDFVTQVSLRDPENKQKYIGSDENWEKAESAIINAAEKKGLKTVIEYGE 463

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      D +  +++                               R  ++G I     
Sbjct: 464 AAFYGPKLDFMVKDALG------------------------------RKWQLGTI---QV 490

Query: 293 KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            Y+LP      + G+D + H  V +     G+M    A++  +  G   +W   ++P + 
Sbjct: 491 DYNLPERFDLHYIGSDNEKHRPVMIHRAPFGSMERFIAILLENTAGDFPLW---LSPDQF 547

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ I    +   D  +K+   L         DD  E+ G +   A+L   P  ++VG  
Sbjct: 548 IILPI---SEKYVDYSKKVSQFLENHDISGQIDDRNEKTGKKIRDAELKKIPFMLVVGEN 604

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              +  + ++ R  G    M LE+ + Y    
Sbjct: 605 EEKEGTISVRRRGEGDLGVMKLEDFVAYFKKE 636


>gi|225864350|ref|YP_002749728.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|225785860|gb|ACO26077.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
          Length = 639

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 163/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEASLENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 + + L+  +        N +
Sbjct: 614 YGEEKSDVIELDMFVESIKVEIKNRK 639


>gi|42783753|ref|NP_981000.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206969938|ref|ZP_03230892.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218234238|ref|YP_002369371.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|228923319|ref|ZP_04086607.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954844|ref|ZP_04116864.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960844|ref|ZP_04122479.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048283|ref|ZP_04193851.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229072077|ref|ZP_04205286.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|229081828|ref|ZP_04214320.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229112040|ref|ZP_04241583.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229129859|ref|ZP_04258825.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229147134|ref|ZP_04275493.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|229152770|ref|ZP_04280953.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|229180894|ref|ZP_04308229.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|229192776|ref|ZP_04319734.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|229198724|ref|ZP_04325422.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|296505048|ref|YP_003666748.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|42739683|gb|AAS43608.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206735626|gb|EDZ52794.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218162195|gb|ACK62187.1| threonine--tRNA ligase [Bacillus cereus B4264]
 gi|228584746|gb|EEK42866.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228590615|gb|EEK48476.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228602451|gb|EEK59937.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228630590|gb|EEK87236.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228636383|gb|EEK92854.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228653550|gb|EEL09422.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228671363|gb|EEL26664.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228701416|gb|EEL53910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228711011|gb|EEL62977.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228723008|gb|EEL74385.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228798866|gb|EEM45845.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228804833|gb|EEM51432.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228836273|gb|EEM81626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296326100|gb|ADH09028.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|324328469|gb|ADY23729.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 645

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 176/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|228994292|ref|ZP_04154183.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228765442|gb|EEM14105.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 641

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 162/445 (36%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + + +RE Q 
Sbjct: 232 LESYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIVRNELESFLREIQQ 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + +  LW ESG +D Y   M   ++ ++K+    P +      IF++ +
Sbjct: 290 NYDYQEVRTPIMMNQGLWEESGHWDHYKDNMY-FSEVDNKSFALKPMNCPGHMLIFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRDLPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIESEIKSVLKQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       E    A++    V  S ++       +      
Sbjct: 408 DYVYRTFGFEY-EVELSTRPEDSMGDDELWNQAESSLENVLKSLNYNYRVNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALQRSHQCGTVQLD----FQMPEKF----DLN 498

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    + K   V +    +G+      ++     G    W   +AP +I +I +   +QV
Sbjct: 499 YIDERNEKRRPVVIHRAVLGSFDRFLGILIEHFGGAFPTW---LAPVQIKVIPVS--NQV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +L  VG     D   E++G +   A L   P  +++G K + +  V ++ 
Sbjct: 554 HEQYTKEIEEKLKSVGLRAERDARSEKLGYKIREAQLQKIPYILVIGDKEMENGSVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 E +SL   +        N 
Sbjct: 614 YGEEKSEVVSLSAFMESIRKEVYNK 638


>gi|306841798|ref|ZP_07474483.1| threonyl-tRNA synthetase [Brucella sp. BO2]
 gi|306288128|gb|EFM59518.1| threonyl-tRNA synthetase [Brucella sp. BO2]
          Length = 661

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 236 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 291

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 292 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 351

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 352 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 410

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 411 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 457

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 458 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 505

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 506 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 562

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 563 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 619

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 620 EKTVNMRRLGSRDQESMTLDEAIARLCEE 648


>gi|294101704|ref|YP_003553562.1| threonyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616684|gb|ADE56838.1| threonyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 633

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 157/440 (35%), Gaps = 41/440 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + ++  L+E   RD      +L L +  I     G   + P G   L+ +    R+   +
Sbjct: 225 QTYITRLEEAKNRDHRKIGKELDLFS--IQPEGPGFPFFHPKGMAILNKLTEFWRQVHEK 282

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW+ SG +D Y   M    + ++      P +      I++S I+
Sbjct: 283 NGYCEIRTPLILDRSLWIRSGHWDHYRDNMY-FTEIDEMPFAIKPMNCPGGILIYKSQIR 341

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ +  R E      G+MR R F   DA+ +  TPE  K     +     
Sbjct: 342 SYRDLPLRMAELGIVHRHERSGVLHGLMRVRCFTQDDAHLY-CTPEQVKDEIKGIMYLCQ 400

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+  +      M   + P     S E   +A+T   +     +      P +   +   
Sbjct: 401 YIYRDIFGFKYTMELSTRPENSMGSEEQWNIAETALKEALEETNMQYRVNPGDGAFYGPK 460

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               +    R  + G I     +       TF
Sbjct: 461 IDF---------------------------HLEDCIGRTWQCGTI-QLDFQMPEKFDLTF 492

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADGK+H  V +    +G++     ++     G    W   +AP ++ L+ I    +  
Sbjct: 493 VGADGKEHRPVMLHRTILGSLERFFGILIEQFAGAFPYW---LAPVQVRLLPI---SEDF 546

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    + A+L      V  D   E++G +   A +   P   ++G K V+  +V  + R
Sbjct: 547 LDYARLVQAKLVANNIRVEIDSRDEKLGKKIRDAQIQKIPYMAVIGEKEVASDQVAPRER 606

Query: 422 LTGIREDMSLEEVINYASHR 441
             G    MS+   I+     
Sbjct: 607 SRGDLGAMSINSFIDVLMEE 626


>gi|212638370|ref|YP_002314890.1| threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|226701399|sp|B7GGN9|SYT_ANOFW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212559850|gb|ACJ32905.1| Threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 643

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 170/441 (38%), Gaps = 34/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +LQE   RD      +L L      +  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRLLQEAKERDHRKLGKELDLFM-TSQKVGQGLPLWLPKGATIRRTIERYIVDKELSLG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y   M    + +++ ++  P +      +++  I SY
Sbjct: 293 YQHVYTPVLGSVELYKTSGHWDHYKDGMFPPMEMDNEQLVLRPMNCPHHMMVYKHKIHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIF-VRPDQIKDEFKRVVNLILDV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL     R                  D  + + +   D M     S   +  D + 
Sbjct: 412 YKDFGLTDYSFRLSYR--------------DPQDKEKYYDDDAMWEKAQSMLKEAMDELG 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+    +     A      + ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 458 LD--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYIG 507

Query: 305 ADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +     +  D
Sbjct: 508 EDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPIQVQVIPVAP--SIHMD 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G  V  D+  E+IG +   A +   P  ++VG   V++  V ++    
Sbjct: 563 YAYEVKHALQVAGIRVEVDEREEKIGYKIREAQMQKIPYMLVVGDNEVNERAVNVRKYGE 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
              E M L+  ++  +     
Sbjct: 623 QKSETMPLDAFVDSIAKEVRK 643


>gi|169829542|ref|YP_001699700.1| threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
 gi|168994030|gb|ACA41570.1| Threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
          Length = 643

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 177/443 (39%), Gaps = 34/443 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFT-TSQKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++    R E+     G+ R R   + DA+ F + P+  K  + K+    L
Sbjct: 351 SYRSLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIF-VRPDQIKAEFQKVVQLIL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    L     R                  D  +T+ + + D M     S   +  D 
Sbjct: 410 EVYKDFDLNDYSFRLSYR--------------DPADTEKYFNDDAMWEKAQSMLKEAMDE 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + L+    +     A      + ++  ++ + + +S   ++    F    ++      ++
Sbjct: 456 LGLD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLSY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +   ++  
Sbjct: 506 VGEDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVEVIPVS--NEAH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V    V ++  
Sbjct: 561 FDYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEAKGVNVRRY 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            +   E +S E  +       + 
Sbjct: 621 GSKDSETISFENFLAAIKAEITK 643


>gi|205374566|ref|ZP_03227362.1| threonyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 643

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 168/443 (37%), Gaps = 34/443 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ +
Sbjct: 232 KEQLRLLEEAKERDHRKIGKELDLFMN-SQKVGQGLPLWLPKGATVRRMIERYIVDKEEK 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S DL+  SG +D Y + M  + + +++ ++  P +      I+++ I 
Sbjct: 291 LGYDHVYTPVLGSVDLYKTSGHWDHYQENMFPVMEMDNEELVLRPMNCPHHMMIYKNGIH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    +
Sbjct: 351 SYRELPIRIAELGTMHRYEMSGALAGLQRVRGMTLNDAHIF-VRPDQIKEEFKRVVRLVM 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    LK    R                  D  +T+ +   D M     S   +  D 
Sbjct: 410 EVYKDFDLKDYSFRLSYR--------------DPEDTEKYFDDDQMWERAQSMLKEAMD- 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             L+    +     A      + ++  +L + + +S   ++    F    ++      T+
Sbjct: 455 -ELDVHYFEADGEAAFYGPKLDVQVKTALGKEETLSTVQLD----FLLPERF----DLTY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +     V 
Sbjct: 506 VGEDGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--DVH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   L   G     D   E+IG +   A +   P  ++VG   + +  V ++  
Sbjct: 561 FDYAKKVQEELRSAGIRADLDSRDEKIGYKIREAQMQKIPYMLVVGDNEIEEEAVNVRKY 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                E +   +         + 
Sbjct: 621 GEQKSETLPFAQFFTALKKEVTK 643


>gi|228965357|ref|ZP_04126449.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794347|gb|EEM41861.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 640

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 162/445 (36%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ ++ +   + V
Sbjct: 499 YIDENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVVPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++  +L+K G  V  D   E++G +   A +   P  +++G K +    V ++ 
Sbjct: 554 HEQYCSEVAHKLAKAGVRVEQDARDEKLGYKIREAQMQKVPYFLVIGDKEMESGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 E ++L+  +        N 
Sbjct: 614 YGEEKSEVVALDVFVARIEEEIKNR 638


>gi|119505276|ref|ZP_01627351.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119458967|gb|EAW40067.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 639

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 159/444 (35%), Gaps = 51/444 (11%)

Query: 2   RRSKYFL-PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  I +   RD    + KL L      + + G+  W P G      + + +R++
Sbjct: 226 KQLKAYLNRIAEAEKRDHRKIAKKLDLF--HTQEEAPGMVFWHPAGWTIYQVIESYMRKQ 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R    E+  P +    LW  SG  D +   M  L D +D+     P +      +F  
Sbjct: 284 QLRFDYEEIKTPQVVDISLWQRSGHADKFASGMFTL-DADDRQFAVKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEAQIQSEVATFID 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   +  R  + P     S      A+    +   +KD     +P E   +
Sbjct: 402 MLHEVYADFGFTEVIYRLSTRPAERVGSETDWDRAEAALAEALDAKDLNWEMLPGEGAFY 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSL 296
              I  +                                     +G ++  GT    +S+
Sbjct: 462 GPKIEFSLKDC---------------------------------IGRVWQLGTIQVDFSM 488

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  + A +   DG     V +    +G+      ++   ++G+  +W   +A  +  +  
Sbjct: 489 PGRLDAQYVAEDGSRQVPVMLHRAVLGSFERFIGILIEHYEGEFPLW---LASQQAIVAP 545

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I           +++ A L + G  V  D   E+IG +    +L   PL ++VG K ++ 
Sbjct: 546 ITDK---QGAYAQQVAADLKEAGFRVGTDLRNEKIGFKIREHELAKVPLVLVVGDKEMAA 602

Query: 414 SKVEIKHRLTGIREDMSLEEVINY 437
             V ++ R       ++L  ++  
Sbjct: 603 GTVAVRGRHGADLGSLNLAALMQL 626


>gi|319744717|gb|EFV97060.1| threonine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 647

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 170/444 (38%), Gaps = 36/444 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   M++ +  +G+  WLP G      +   I +++  +
Sbjct: 229 YLKRREEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRELERYIVDKEIAS 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G   +  P + S + +  SG +D Y ++M    D  D +  +  P +     ++++ H+ 
Sbjct: 287 GYQHVYTPPMASVEFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHHVH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E      G+ R RE  + DA+ F +TPE  K  + K      
Sbjct: 347 SYRELPIRIAELGMMHRYEKSGALTGLQRVREMTLNDAHIF-VTPEQIKDEFLKALNLIA 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+    L     R                  D  +   +   D M     +   +  D 
Sbjct: 406 EIYEDFNLTDYRFRLSYR--------------DPEDKHKYYDNDEMWENAQAMLKEAMDD 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             L+    +     A      + ++  +L   + +S   ++    F    ++       +
Sbjct: 452 FGLD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DLKY 501

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG++H  + +   GI  M    A++  ++ G    W   +AP ++S+I I   ++  
Sbjct: 502 IGADGEEHRPIMIHRGGISTMERFTAILIETYKGAFPTW---LAPQQVSVIPIS--NEAH 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     DD  E++  +   A     P Q+IVG K + +  V ++  
Sbjct: 557 IDYAWEVARVLKDRGIRAEVDDRNEKMQYKIRAAQTQKIPYQLIVGDKEMEEKGVNVRRY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E  S+EE +       +  
Sbjct: 617 GSKATETKSIEEFVESILADIARK 640


>gi|221066194|ref|ZP_03542299.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711217|gb|EED66585.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 639

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 149/443 (33%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I +HS G   W P G      V   +R      G
Sbjct: 231 YLFRLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M    D   +     P +      IF+  IKSY
Sbjct: 289 YQEVKAPQILDKGLWEKTGHWDKYRENMFT-TDSEKREYALKPMNCPGHIIIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 348 RDLPLRFGEFGNCHRNEPTGSLHGIMRVRAFTQDDGHIF-CTEDQIQAEVTAFTSLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     + E    A+    +   +       +P E   +   I 
Sbjct: 407 YADFGFTNILYRLSTRPEKRIGTDEAWDKAENALAEGLRASGCEFEYLPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I          + A F G
Sbjct: 467 YTL---------------------------KDALGREWQCGTI-QVDPNMPERLDAEFVG 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCR 362
            DG+ H  + +    +G++     ++   H G    W   +AP + +++NI        +
Sbjct: 499 EDGERHRPIMLHRAILGSLERFIGILVEHHSGALPAW---LAPVQAAVLNITDAQADYAQ 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+   L      V  D   E+I  +     +   P  ++ G K  +   V ++ R 
Sbjct: 556 EVAQKLQKALPNQSLRVVTDLRNEKITYKIREHSMQKLPYILVAGDKEKAAGAVAVRARG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS++  I   +   +  
Sbjct: 616 NKDLGVMSVDAFIELLAKDVTAK 638


>gi|229019800|ref|ZP_04176603.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229026025|ref|ZP_04182408.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228735241|gb|EEL85853.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228741525|gb|EEL91722.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 645

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|218897336|ref|YP_002445747.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218542902|gb|ACK95296.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 640

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 162/445 (36%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ ++ +   + V
Sbjct: 499 YIDENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVVPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++  +L+K G  V  D   E++G +   A +   P  +++G K +    V ++ 
Sbjct: 554 HEQYCSEVAHKLAKAGVRVEQDARDEKLGYKIREAQMQKVPYFLVIGDKEMESGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 E ++L+  +        N 
Sbjct: 614 YGEEKSEVVALDVFVARIEEEIKNR 638


>gi|30022651|ref|NP_834282.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|29898209|gb|AAP11483.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 646

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 176/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 238 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 297 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 415

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 416 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 462 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 511

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 512 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 567 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 626

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 627 KSETIALDAFVDMIK 641


>gi|157693298|ref|YP_001487760.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157682056|gb|ABV63200.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 646

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 168/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ R G 
Sbjct: 238 LRLLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEVRLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG +  Y ++M  + + +++ ++  P +      I+++   SYR
Sbjct: 297 EHVYTPVLANVELYKTSGHWAHYQEDMFPVMEMDNEDLVLRPMNCPHHMMIYKNEPHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +       ++
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFIRTVRLIEEVY 415

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                  D  +T+ +   D M     S   D  D +  
Sbjct: 416 QDFGLNDYTFRLSYR--------------DPEDTEKYFDDDAMWNKAQSMLKDAMDELGH 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 462 D--YYEAEGEAAFYGPKLDVQVKTALGKEETLSTVQLD----FLLPERF----DLTYIGE 511

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +     V  D 
Sbjct: 512 DGKHHRPVVIHRGVVSTMERFVAFLIEEYKGALPTW---LAPVQFQVIPVSP--SVHLDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL   G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 567 AKKVQERLQLEGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 626

Query: 425 IREDMSLEEVINYASHR 441
             E M LE  + +A   
Sbjct: 627 DSETMDLEAFVKHAVAE 643


>gi|225868159|ref|YP_002744107.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259516675|sp|C0MCN7|SYT_STRS7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225701435|emb|CAW98547.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 648

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 178/450 (39%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F + PE  +  + +    
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLFVM-PEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPKDTHKYYDNDEMWENAQSMLKAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    +++L    
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERFNL---- 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I I   ++
Sbjct: 502 SYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPRQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 AHIDYAWEVAKTLRDHGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMQDKSVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +      ++   ++      +  +RP 
Sbjct: 617 RYGSKATHTEAISAFVDNILADIARKSRPA 646


>gi|237815491|ref|ZP_04594489.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790328|gb|EEP64538.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 693

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 268 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 323

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 324 DSHGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 383

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 384 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 442

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 443 HINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 489

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 490 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 537

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 538 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 594

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 595 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 651

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 652 EKTVNMRRLGSRDQESMTLDEAIARLCEE 680


>gi|254706742|ref|ZP_05168570.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261314206|ref|ZP_05953403.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261303232|gb|EEY06729.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
          Length = 658

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D      P +      
Sbjct: 289 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDCVFALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 408 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 454

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 455 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 503 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 560 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 617 EKTVNMRRLGSRDQESMTLDEAIARLCEE 645


>gi|150018038|ref|YP_001310292.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149904503|gb|ABR35336.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 635

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 164/444 (36%), Gaps = 47/444 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T    +   G    LP G    + +    R+     G 
Sbjct: 232 LHNLEEAKKRDHRKLGKELKLFT--FAEEGPGFPFMLPKGVILKNTLIDFWRKLHYEDGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +  LW  SG +  Y + M   +  +++     P +      +++S   SYR
Sbjct: 290 VEIETPIMLNKKLWETSGHWYHYRENMYT-SSIDEEEFALKPMNCPGGMLVYKSESHSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    ++    R EL     G+MR R F   DA+ F L P+  K     +     +++
Sbjct: 349 DFPMRVGELGRVHRHELSGALHGLMRVRAFTQDDAHIFML-PDQIKSEIKGVINLIDKVY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            + G K   +   + P     S E   LA++                 S     D++   
Sbjct: 408 SKFGFKY-NLELSTRPEDSMGSDEEWELAES-----------------SLKGALDELNLE 449

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATF 302
             I E   A Y    D H E              R  + G I   F    ++       +
Sbjct: 450 YKINEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPQRF----ELEY 495

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DG+ H  + +     G++     ++     GK   W   ++P ++ ++ I       
Sbjct: 496 VGSDGEKHRPIVIHRVVFGSIERFIGILIEHFAGKFPTW---LSPVQVKILPISNK---F 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               EKI  +LS  G  V  D   E+IG +   A     P  +IVG K  +++ + ++ R
Sbjct: 550 NSYSEKIKDKLSSEGIRVEIDQKDEKIGYKIREARNERVPYIIIVGEKEAAENNISLRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    ++LE++I   ++   N 
Sbjct: 610 SNGDEGTLNLEDLIERINNEVKNK 633


>gi|229102972|ref|ZP_04233661.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228680387|gb|EEL34575.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 640

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 162/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMGQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++  +L++ G  +  D   E++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HVQYANEVADKLAQAGVRIERDMRDEKLGYKIREAQMQKIPYVLVIGDKEMENGSVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+           N +
Sbjct: 614 YGEEKSEVVALDVFAASMEEEIKNRK 639


>gi|254993456|ref|ZP_05275646.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 445

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 172/444 (38%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R
Sbjct: 33  KEFIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEER 91

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I 
Sbjct: 92  LGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIH 151

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L
Sbjct: 152 SYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELIL 210

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K    R                  D   T+ +   D M     +      D 
Sbjct: 211 EVYKDFDIKDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQAMLKSAMDE 256

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  ++ + + +S   ++    F    ++      T+
Sbjct: 257 MEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTY 306

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +   G+ + M    A +   + G    W   +AP ++ LI + A     
Sbjct: 307 IGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMELIPVNA--DAH 361

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  +L + G     DD  E++G +   A     P  +++G + V    V ++  
Sbjct: 362 LDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRY 421

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E M L+  I       S  
Sbjct: 422 GSKDSETMDLDAFIAQVVAEVSKY 445


>gi|238918575|ref|YP_002932089.1| prolyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259511594|sp|C5B780|SYP_EDWI9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238868143|gb|ACR67854.1| prolyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 572

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYEAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFS 224



 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 120/206 (58%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +  A     +D+ N    D  P+ K      RGIEVGHIF  GTKY+  +
Sbjct: 366 DGKHYFGINWERDAALPQIADIRNVIEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 NATVQGEDGRNQLMTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G +V  DD  E+ G  FA  +L+G P  +++G + + ++++E
Sbjct: 486 SFRVKEVAERLYDGLRAKGIEVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNNEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +S++E+  +   + +
Sbjct: 546 YKYRRSGDKLMISVDEIEAFLQAQIA 571


>gi|332201058|gb|EGJ15129.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 647

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 173/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD +DH   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADSEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 617 RYGQKETQTVSVDNFVQAILADIANK 642


>gi|310640050|ref|YP_003944808.1| ser-tRNA(thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
 gi|309245000|gb|ADO54567.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
          Length = 637

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 150/442 (33%), Gaps = 42/442 (9%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP G      +    R+ Q   G 
Sbjct: 235 LHLLEEAKKRDHRKLGKELELF--MFSEEAPGMPFYLPKGMVVRTALEDYSRDIQRLHGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG Y+ Y + M   ++ ++      P +      +F++ + SYR
Sbjct: 293 EEVRTPLMMNNRLWEQSGHYEHYKENMY-FSEVDETTFALKPMNCPGHMLVFKNELHSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R EL     G+MR R F   DA+ F +TP   +     +      ++
Sbjct: 352 DLPIRISEFGQVHRHELSGALNGMMRVRTFCQDDAHIF-VTPGQIEKEITDVIKLINEMY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     +   + P                           D    +     D +   
Sbjct: 411 SVFGFDF-TVELSTRP-----------------DDFMGEPALWDQAEQALQNVLDHLGIN 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I     A Y    D H                R  + G I     +       T+ G 
Sbjct: 453 YRINAGDGAFYGPKIDFHILDAL----------KRSWQCGTI-QLDFQMPEKFDLTYVGE 501

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H  V +     G++     ++     G   +W   +AP    L+ +    +   + 
Sbjct: 502 DNQKHRPVVIHRAIYGSIDRFMGILTEHFTGAFPLW---LAPVHAKLLPV---SENYIET 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L K G  V  D   E++G +   A L   P   ++G    +   V ++ R  G
Sbjct: 556 ANEVQEALLKAGLRVEVDTRNEKLGYKIREAQLEKVPYMFVIGENEKTTGTVAVRKRGEG 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                S+ +++   S      +
Sbjct: 616 DLGSFSIADIVEKISTEIHEKQ 637


>gi|194017082|ref|ZP_03055694.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010950|gb|EDW20520.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 646

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 168/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ R G 
Sbjct: 238 LRLLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEVRLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG +  Y ++M  + + +++ ++  P +      I+++   SYR
Sbjct: 297 EHVYTPVLANVELYKTSGHWAHYQEDMFPVMEMDNEDLVLRPMNCPHHMMIYKNEPHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K  + +       ++
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFIRTVRLIEEVY 415

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                  D  +T+ +   D M     S   D  D +  
Sbjct: 416 QDFGLNDYTFRLSYR--------------DPEDTEKYFDDDAMWNKAQSMLKDAMDELGH 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 462 D--YYEAEGEAAFYGPKLDVQVKTALGKEETLSTVQVD----FLLPERF----DLTYIGE 511

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +     V  D 
Sbjct: 512 DGKHHRPVVIHRGVVSTMERFVAFLIEEYKGALPTW---LAPVQFQVIPVSP--SVHLDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL   G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 567 AKKVQERLQLEGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 626

Query: 425 IREDMSLEEVINYASHR 441
             E M LE  + +A   
Sbjct: 627 DSETMDLEAFVKHAVAE 643


>gi|23016433|ref|ZP_00056189.1| COG0441: Threonyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 621

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 154/442 (34%), Gaps = 48/442 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG-MIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R   + HQ   + G   W   G      V + +R     
Sbjct: 216 YLHMLEE----AEKRDHRRLGREMELFHQQEEAAGSVFWHKKGWTLYRAVESYMRRRLEA 271

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P L    LW  SG  D + + M  +  ++++ +   P +      IFR  IK
Sbjct: 272 NDYQEVKTPQLVDFSLWEASGHADKFSESMFTIRTQDERHLAVKPMNCPCHVQIFRQGIK 331

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F  T +              
Sbjct: 332 SYRDLPLRMAEFGSCHRYEPSGALHGIMRVRAFTQDDAHIF-CTEDQITSETIAFCQLLK 390

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     S E    A++   +   +        P E   +   
Sbjct: 391 EVYTDFGFTDVRVKFSDRPAKRAGSDETWDKAESALLEASKAAGLETVLNPGEGAFYGPK 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               +    R  + G        + LP  + A
Sbjct: 451 LEF---------------------------VLRDAIGRDWQCGT---LQVDFVLPERLDA 480

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG K   V +    +G+      ++  +  G+  +W   +AP ++ +  I +   
Sbjct: 481 AYVAEDGAKKRPVMLHRAILGSFERFLGILIENFAGRFPVW---LAPVQVVVATIVSEAD 537

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      ++ A L   G  V  D   E+I  +     +   P+ ++VG +     +V I+
Sbjct: 538 VF---ATEVAATLKAAGIRVELDLRNEKINYKVREHSVAKVPVMLVVGKREAESRQVAIR 594

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              +  +E ++L++ +   +  
Sbjct: 595 RLGSQNQEIVALDQAVATLAAE 616


>gi|225870895|ref|YP_002746842.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|225700299|emb|CAW94574.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 655

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 177/450 (39%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 236 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 293

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 294 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 353

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 354 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLF-VTPEQIQEEFQRALQL 412

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 413 IIDVYEDFNLTDYRFRLSYR--------------DPKDTHKYYDNDEMWENAQSMLKAAL 458

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D +  +    +     A      + ++  +L   + +S   ++    F    +++L    
Sbjct: 459 DEMGAD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERFNL---- 508

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I   ++
Sbjct: 509 SYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPRQVTVIPIS--NE 563

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 564 AHIDYAWEVAKILRDHGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMQDKSVNVR 623

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +      ++   ++      +  +RP 
Sbjct: 624 RYGSKATHTEAISAFVDNILADIARKSRPA 653


>gi|322389968|ref|ZP_08063508.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321143404|gb|EFX38842.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 647

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 172/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEEEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPEDKHKYFDNDEMWENAQRMLKAAV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMGVE--YYEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  E MS++  +       +N 
Sbjct: 617 RYGQKETETMSVDAFVELILTDIANK 642


>gi|228900981|ref|ZP_04065194.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228858679|gb|EEN03126.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 640

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 162/445 (36%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ ++ +   + V
Sbjct: 499 YIDENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVVPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++ 
Sbjct: 554 HEQYCSEVAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYFLVIGDKEMESGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 E ++L+  +        N 
Sbjct: 614 YGEEKSEVVALDVFVARIEEEIKNR 638


>gi|288818602|ref|YP_003432950.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788002|dbj|BAI69749.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752193|gb|ADO45676.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 637

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 168/446 (37%), Gaps = 44/446 (9%)

Query: 11  LQENPR---DAEIASHKLMLR--TGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L+E  +   +A+   H+ + R     I       G+  WLP G      +    REE  +
Sbjct: 227 LEERLKFYEEAKKRDHRKLGRDLEFFIIDEDVGPGLVLWLPKGGIYRKILEDYWREEHLK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + +A LW  SG  D Y   M      + +     P +      I++S ++
Sbjct: 287 RGYQFVYTPHIGNAKLWQISGHLDYYRPNMFSSMQVDQEEYFVKPMNCPFHIAIYKSKVR 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP    ++   +R E+     G+MR R F   DA+    T E  +   ++     +
Sbjct: 347 SYKELPLKLAELGTVYRYEMSGVLHGLMRVRGFTQDDAHII-CTEEQVEDVIHQTLEFAI 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G +   +   + P     S +   LA+    +   S                  
Sbjct: 406 SMLRDFGFEEFKVYISTKPEDAIGSPDQWQLAENSLKKAVES------------------ 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             +    +      A      + K+ D++    + S    +    F    ++       +
Sbjct: 448 --MGIPYQIDEGGGAFYGPKIDVKIKDAIGRLWQCSTIQFD----FNLPERF----DMEY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D K H    +    +G++     ++   + G   +W   ++P ++ LI I    +  
Sbjct: 498 VGPDNKRHRPYMIHRALLGSIERFTGILLEHYAGALPVW---LSPVQVRLIPIG---EAH 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+  RL + G  V  DD  E++ ++   A++   P  +++G K VS  K+ ++ +
Sbjct: 552 MDYTKKLENRLKEEGLRVEVDDRDERLSAKIRDAEVQKIPYVIVIGDKEVSQGKISVRSK 611

Query: 422 LTGIREDMSLEEVINYASHRFSNNRP 447
             G    MS+EE I +   +  +  P
Sbjct: 612 KEGNLGSMSVEEFIKHIKDKIKSKAP 637


>gi|228997455|ref|ZP_04157073.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229005099|ref|ZP_04162823.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228756201|gb|EEM05522.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228762288|gb|EEM11216.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 641

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 161/445 (36%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + + +RE Q 
Sbjct: 232 LESYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIVRNELESFLREIQQ 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + +  LW ESG +D Y   M   ++ ++K+    P +      IF++ +
Sbjct: 290 NYDYQEVRTPIMMNQGLWEESGHWDHYKDNMY-FSEVDNKSFALKPMNCPGHMLIFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRDLPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIESEIKSVLKQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       E    A+     V  S ++       +      
Sbjct: 408 DYVYRTFGFEY-EVELSTRPEDSMGDDELWNQAELSLENVLKSLNYNYRVNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALQRSHQCGTVQLD----FQMPEKF----DLN 498

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    + K   V +    +G+      ++     G    W   +AP +I +I +   +QV
Sbjct: 499 YIDERNEKRRPVVIHRAVLGSFDRFLGILIEHFGGAFPTW---LAPVQIKVIPVS--NQV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +L  VG     D   E++G +   A L   P  +++G K + +  V ++ 
Sbjct: 554 HEQYTKEIEEKLKSVGLRAERDARSEKLGYKIREAQLQKIPYILVIGDKEMENGSVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 E +SL   +        N 
Sbjct: 614 YGEEKSEVVSLSAFMESIRKEVYNK 638


>gi|229169303|ref|ZP_04297013.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614066|gb|EEK71181.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 645

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|229087132|ref|ZP_04219282.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696200|gb|EEL49035.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 643

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 174/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 294 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M     S   +  D +  
Sbjct: 413 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQSMLKEAMDEMG- 457

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 458 -LEYYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 509 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 564 AKKVQEELQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  +    
Sbjct: 624 KSETIALDAFVEMIK 638


>gi|241668765|ref|ZP_04756343.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877296|ref|ZP_05250006.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843317|gb|EET21731.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 635

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 155/447 (34%), Gaps = 49/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R    +
Sbjct: 231 YLHMLEE----AEKRDHRKIGKALDLFHFQEDSPGIAFWHDSGVRIWREVEDYMRASNKK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 287 YGCGEIRTPLIADFSLWEKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G+MR R F   D + F   PE  +     M     
Sbjct: 346 SYRDLPIRMAEFGIVHRNEPSGSLHGLMRVRSFTQDDGHIFCA-PEQVEEEVILMVKQCF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P     + E    ++        + +     +P E   +   
Sbjct: 405 EVYKDFGFNDFTVKIALRPENRIGNDETWDKSEQMLKNALDANNVAYELLPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 465 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPDRLGA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G K   V +    +G++     ++   + G   +W   + P +++++ I  H  
Sbjct: 495 TYIDKNGNKQVPVMLHRAIVGSLERFIGMLIEHYAGNMPLW---LTPVQVAVMGISNH-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C+K++  L K G     D   E+IG +     LL  P  VI+G        V ++
Sbjct: 550 -QDEYCQKVFETLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKSEQEQEIVTVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                    MS+ +   + + +    +
Sbjct: 609 KHNGEDLGQMSIGDFCAFLNEQIEAKK 635


>gi|239831910|ref|ZP_04680239.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824177|gb|EEQ95745.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 674

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 157/449 (34%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 249 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 304

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 305 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHVQ 364

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 365 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 423

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 424 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMSVLD------------ 471

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 472 ----QIQQQSNNIKTGVLPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 518

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 519 LPERFGAFYIDKDSEKRQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 575

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +   +  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 576 TITSD---ADEYAAQAAAKLKAAGLQVATDLRNEKINYKVREHSLQKVPVILVCGKREAE 632

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++ V ++   +  +E M+L+E I      
Sbjct: 633 ENTVNMRRLGSRDQESMTLDEAIARLVEE 661


>gi|148560208|ref|YP_001259002.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|148371465|gb|ABQ61444.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 693

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 268 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 323

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 324 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 383

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 384 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 442

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 443 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 489

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 490 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 537

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 538 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 594

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 595 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 651

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 652 EKTVNMRRLGSRDQESMTLDEAIARLCEE 680


>gi|163942310|ref|YP_001647194.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229013779|ref|ZP_04170907.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|229062260|ref|ZP_04199581.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|229135411|ref|ZP_04264199.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|163864507|gb|ABY45566.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228648054|gb|EEL04101.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228716988|gb|EEL68669.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228747448|gb|EEL97323.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 645

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|289548737|ref|YP_003473725.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182354|gb|ADC89598.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 645

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 164/443 (37%), Gaps = 41/443 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L   +E  R D      +L     MI +    G+  WLP G      +    REE  + G
Sbjct: 233 LRFYEEVKRRDHRKLGKEL--EMFMIDEEIGAGLVIWLPKGGIYRKVLEDYWREEHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + +A LW +SG  D Y + M    +  D+     P +      I++S ++SY
Sbjct: 291 YQLVYTPHIGNAKLWQKSGHLDHYRQNMFPPMELEDEEYFVKPMNCPFHIAIYKSKVRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LPF   ++   +R E+     G+MR R F   DA+     P+       +     + +
Sbjct: 351 RDLPFRLAELGTVYRYEMSGVLHGLMRVRGFTQDDAHII-CRPDQVDDVIQETLDFAISM 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P     S E    A++   +   S                    
Sbjct: 410 LRDFGFDEFKVYISTKPEDAIGSDEQWEKAESALKKAVESMGLEYEIDEGGG-------- 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D+L    + S    +    F    ++       + G
Sbjct: 462 ------------AFYGPKIDVKIRDALGRLWQCSTIQFD----FNLPERF----DMEYVG 501

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D + H    +    +G++     V+   H G   + P  +AP ++ ++ +    +   +
Sbjct: 502 PDNRRHRPYMIHRAILGSIERFTGVLLEHHAG---LLPFWLAPVQVRVLPV---QERHVE 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L + G  V  D+  E++G++   A+L   P  +IVG K + D  V ++ +  
Sbjct: 556 YARSVANTLREEGFRVEVDERDERLGAKIRDAELQKIPYVLIVGDKEMQDGSVSVRGKRE 615

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    MSL++++++     +  +
Sbjct: 616 GDLGKMSLQDLLSFLRSANTKRQ 638


>gi|229032221|ref|ZP_04188194.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|229076078|ref|ZP_04209046.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|229105203|ref|ZP_04235852.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228678129|gb|EEL32357.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228706941|gb|EEL59146.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|228729001|gb|EEL80004.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 645

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++ L     + G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERFELA----YVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|94676542|ref|YP_588910.1| threonyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123081480|sp|Q1LT04|SYT_BAUCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94219692|gb|ABF13851.1| threonyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 642

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 151/450 (33%), Gaps = 46/450 (10%)

Query: 1   MRRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           M+  K +L  LQE   RD      +L L    I + + G+  W   G      +   IR 
Sbjct: 227 MQL-KCYLQSLQEVKKRDHRKIGQQLDLY--HIQEEAPGMVFWHVDGWIIFRELETFIRS 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +       E+  P +    LW ++G + +Y + +   +  N +     P +      IF 
Sbjct: 284 KLQTYKYQEVKSPVMIDRTLWEQTGHWSNYAEHIFTTSSEN-REYCIKPMNCPGHVQIFN 342

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             I SYR+LP    +    +R+E      G+MR R F   DA+ F  T E      N   
Sbjct: 343 QQINSYRDLPLRMAEFGSCYRNEPSGSLHGLMRVRNFTQDDAHIF-CTEEQVCDEINNNI 401

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++H  G K I +   + P     + +    A+        +   +          
Sbjct: 402 KMLYEVYHTFGFKKILVNLSTRPAHRIGNDKIWDKAEQDLATTLTNNGILFKYNVGAGAF 461

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   I    +                               R  + G I      +SLP 
Sbjct: 462 YGPKIEFTLLDSFD---------------------------RAWQCGTI---QLDFSLPS 491

Query: 298 -MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A +   + +    V +    +G++     ++   + G    W   +AP ++ L+NI 
Sbjct: 492 RLKAFYINKNNQRLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPTQVVLMNIS 548

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            +     +   ++  +LS        D   E+IG +     L   P  +I G + +   K
Sbjct: 549 DNQS---NYVIQLMQKLSTANIRAKIDLRNEKIGFKIREHTLRRVPYMLICGDQEIKMGK 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V I+ R         +   I    H  ++ 
Sbjct: 606 VTIRTRYGKNLGMFEMNNFIEKLQHEINHR 635


>gi|229099037|ref|ZP_04229971.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229118067|ref|ZP_04247426.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228665290|gb|EEL20773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228684265|gb|EEL38209.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 645

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++ L     + G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERFELA----YVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|23099609|ref|NP_693075.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
 gi|73919811|sp|Q8EPF3|SYT_OCEIH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22777839|dbj|BAC14110.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
          Length = 646

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 172/442 (38%), Gaps = 34/442 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L IL+E   RD      +L + T +  +  +G+  WLP G     NV   I + + R G 
Sbjct: 234 LQILEERKERDHRKLGKELGIFT-VSQKVGQGLPLWLPKGATIRRNVERYIVDLEERLGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG +D Y  +M    + +++ ++  P +      +F++ + SYR
Sbjct: 293 SHVYTPVLGNVELYKTSGHWDHYQDDMFPTMEMDNEELVLRPMNCPHHMMVFKNQLWSYR 352

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           NLP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++      ++
Sbjct: 353 NLPVRIAELGTMHRHEMSGALAGLQRVRAMTLNDAHIF-ARPDQLKEEFIRVVELVQHVY 411

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+     R                  D  + + +   D M     +   +  +   +
Sbjct: 412 KDFGIDDYYFRLSYR--------------DPEDKEKYVDNDEMWEKAQAMLKETME--DM 455

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N    +     A      + ++  +L +++ +S   ++    F+   ++      T+ G 
Sbjct: 456 NLEYVEAEGEAAFYGPKLDVQVKTALGKDETLSTIQLD----FHLPERF----DLTYIGE 507

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG  H   +   G+ + M    A +   + G    W   +AP ++ +I +    Q   D 
Sbjct: 508 DGNQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVKIIPVSL--QAHLDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + I  +L   G  V  D+  E+IG +   A     P  +++G K +  + V  +     
Sbjct: 563 AKDIEEKLRYQGVRVELDERDEKIGYKIREAQTQKVPFALVLGDKEMESNSVNYRRYGEQ 622

Query: 425 IREDMSLEEVINYASHRFSNNR 446
             E +  ++ +N       N +
Sbjct: 623 DTETLEFDQFLNLIKEEVDNKK 644


>gi|225627544|ref|ZP_03785581.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617549|gb|EEH14594.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 693

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 268 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 323

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 324 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 383

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 384 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 442

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 443 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 489

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 490 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 537

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 538 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 594

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 595 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 651

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 652 EKTVNMRRLGSRDQESMTLDEAIARLCEE 680


>gi|320547252|ref|ZP_08041545.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320448140|gb|EFW88890.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 697

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 178/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   QE   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 278 KAYLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEV 335

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H
Sbjct: 336 ASGYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 395

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 396 VHSYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLF-VTPEQIQDEFQKALQL 454

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 455 IIDVYEDFNLTDYRFRLSLR--------------DPKDTHKYYDDDEMWENAQSMLKAAL 500

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 501 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 550

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I +   ++
Sbjct: 551 TYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTVIPVS--NE 605

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 606 AHVDYAWEVAKLLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 665

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S++E +          +RP
Sbjct: 666 RYGSKQTHTESIDEFVENIMADIDRKSRP 694


>gi|228999356|ref|ZP_04158935.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229006911|ref|ZP_04164541.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228754311|gb|EEM03726.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228760301|gb|EEM09268.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 643

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 294 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M     S   +  D +  
Sbjct: 413 KDFGLENYSFRLSYR--------------DPEDTKKYYADDEMWEKAQSMLKEAMDEMG- 457

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 458 -LEYYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 509 DGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 564 AKKVQEDLQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENGVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 624 KSETIALDAFVDMIK 638


>gi|306831875|ref|ZP_07465030.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425801|gb|EFM28918.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 648

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 180/449 (40%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   QE   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLF-VTPEQIQEEFQKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPKDTHKYYDDDEMWENAQSMLKAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I +   ++
Sbjct: 502 TYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTVIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 557 AHVDYAWEVAKVLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      +++E ++      +  +RP
Sbjct: 617 RYGSKQTHTEAIDEFVDNILADINRKSRP 645


>gi|156935287|ref|YP_001439203.1| prolyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|166980122|sp|A7MI22|SYP_ENTS8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156533541|gb|ABU78367.1| hypothetical protein ESA_03144 [Cronobacter sakazakii ATCC BAA-894]
          Length = 572

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 126/225 (56%), Positives = 164/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR D+A + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWEQYGPELLRFVDRGDRAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQQTYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +  S 
Sbjct: 181 YSKIFTRMGLDFRPVQADTGSIGGSASHEFQVLAQSGEDDIVFSD 225



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 3/201 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPQVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQVLTMGCYGIGVTRVVAAAIEQNHDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV  DD  E+ G  FA  +L+G P  V++G + + + ++E
Sbjct: 486 SFRVQELAEKLYAELRAKGIDVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYA 438
            K+R  G ++ +   ++++Y 
Sbjct: 546 YKYRRDGEKKMIKTGDILDYL 566


>gi|149371736|ref|ZP_01891152.1| threonine--tRNA ligase (threonine tRNA synthetase) [unidentified
           eubacterium SCB49]
 gi|149355363|gb|EDM43923.1| threonine--tRNA ligase (threonine tRNA synthetase) [unidentified
           eubacterium SCB49]
          Length = 647

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 171/451 (37%), Gaps = 41/451 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +L+E   RD      +L L T    +  +G+  WLP G    + +   +++ 
Sbjct: 226 KELKEYLALLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKA 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q + G   +  P + + +L+V SG +  YG++  ++     + +  +  P +     +I+
Sbjct: 285 QKKAGYEMVVTPHIGNKELYVTSGHFAKYGEDSFQVINTPNDGEEFMLKPMNCPHHCEIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +   SY++LP    +    +R E      G+ R R F   DA+ F  TP+     + K+
Sbjct: 345 NAKPMSYKDLPKRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFKKV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +F  LG +    +     +             +   +        +    +   
Sbjct: 404 IDLVLYVFGSLGFEKFTTQVSIRDM-------------SKPEKYIGDVSTWEKAENAILN 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D      + E   A Y    D   +              R  ++G I      Y+LP
Sbjct: 451 AVKDKGLDYIVEEGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLP 497

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                T+KG+D + H  V +     G++    A++     G   +W   + P +++++++
Sbjct: 498 ERFELTYKGSDNELHRPVMIHRAPFGSLERFVAILLEHTGGNFPLW---LMPEQVAILSL 554

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   +  EK+   L         D+  E IG +   A++   P  +I+G +  +D 
Sbjct: 555 ---SEKYEEYAEKVLNLLENHDIRALVDNRNETIGKKIREAEMNKIPYMLILGEQEENDG 611

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + ++    G    M++E   N  +   +  
Sbjct: 612 TISVRKHSEGDLGTMTVEAFGNMITEAIAKE 642


>gi|228987823|ref|ZP_04147932.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158179|ref|ZP_04286246.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228625137|gb|EEK81897.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228771871|gb|EEM20328.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 645

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++ L     + G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERFELA----YVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|297588366|ref|ZP_06947009.1| threonine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573739|gb|EFH92460.1| threonine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 634

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 163/446 (36%), Gaps = 41/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      ++ L +  I +   G   + P G   L+ +   ++E+  
Sbjct: 228 LDEYLERMEEAKKRDHRKIGKEMGLFS--IQEEGPGFPFFHPNGMVVLNELEKFLKEQLL 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  ++  P + + DLW +SG +D Y + M      +       P +      +++  +
Sbjct: 286 DRGYGQIKTPLILNEDLWHQSGHWDHYKENMY-FTQIDGDDYAIKPMNCPGSILVYKDEL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R EL     G+ R R F+  DA+ F L PE  +    K+    
Sbjct: 345 HSYRELPIKVAELGQVHRHELSGALHGLFRVRTFVQDDAHVFCL-PEQIEEEVTKIIDFC 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+ + G K   +   + P     S E   LA                 I S  +  + 
Sbjct: 404 DYIYSKFGFKY-EVELSTRPEDSMGSDEDWDLA-----------------INSLKSALEH 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D H E              R  + G I     +       T
Sbjct: 446 KGLEYKINEGDGAFYGPKIDFHLEDAIG----------RTWQCGTI-QLDFQMPERFDMT 494

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +DG K     +    +G+      ++   + GK  +W   ++P ++ ++ I      
Sbjct: 495 YIASDGSKKRPAMIHRAILGSEERFMGILIEHYAGKFPLW---LSPIQVEILPI---SDK 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  ++   G  V  DD  E+IG +   + L      +I+G   + +++V ++ 
Sbjct: 549 FNDYAYELQQKMKARGLRVKVDDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRK 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G     + +E I+     + N +
Sbjct: 609 RDLGDVGSKNTDEFIDELVDEYQNRK 634


>gi|171780136|ref|ZP_02921040.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281484|gb|EDT46919.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 697

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 176/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   QE   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 278 KAYLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEV 335

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H
Sbjct: 336 ESGYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKYH 395

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 396 VHSYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLF-VTPEQIQEEFQKALQL 454

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 455 IIDVYEDFNLTEYRFRLSLR--------------DPKDTHKYYDDDEMWENAQSMLKAAL 500

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 501 DEMGVE--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 550

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I +   ++
Sbjct: 551 TYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTVIPVS--NE 605

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   +I   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 606 AHVDYAWEIAKVLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 665

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S++E +          +RP
Sbjct: 666 RYGSKQTHTESIDEFVENILADIDRKSRP 694


>gi|153009484|ref|YP_001370699.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|151561372|gb|ABS14870.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 661

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 157/449 (34%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 236 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWKMFQNLVSYMRRRL 291

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 292 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHVM 351

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 352 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 410

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 411 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMSVL------------- 457

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 458 ---EKIQQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 505

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 506 LPERFGAFYIDKDSEKRQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 562

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +   +  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 563 TITSD---ADEYAAQAAAKLKAAGLQVSTDLRNEKINYKVREHSLQKVPVILVCGKREAE 619

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++ V ++   +  +E M+L+E I      
Sbjct: 620 ENTVNMRRLGSRDQESMTLDEAIARLVEE 648


>gi|300870146|ref|YP_003785017.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687845|gb|ADK30516.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 643

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/447 (21%), Positives = 172/447 (38%), Gaps = 42/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY   + +   RD      +L L +   H    G   W P G      V + IR E +
Sbjct: 226 LDKYLKKLKEAKERDHRKLGKELNLFS--FHDEGPGFPFWHPNGMIIYKAVESYIRNEND 283

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+  P + + +LW  SG +D+Y + M    + +D      P +      ++ S+I
Sbjct: 284 KRGYVEIKTPAILNEELWHRSGHWDNYKENMY-FTEIDDTKYAVKPMNCPGGLIVYNSNI 342

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++    R EL     G+ R R F   DA+ F  T E            Y
Sbjct: 343 HSYRDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIF-CTEEQLGDEIINTIEYY 401

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++   G K   +   + P     S E   LA                    +   +  
Sbjct: 402 LSVYKDFGFKDFEIFVSTRPAKSIGSDEIWELATKSLMNALDKLGISYKVNEGDGAFYGP 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--S 299
            I  N                            K V  R  + G        +SLPM   
Sbjct: 462 KIDFN---------------------------IKDVLDRNWQCGT---LQVDFSLPMRFE 491

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +++G DGK H  V +    +G+M     ++   ++GK  +W   ++P +++++N+  ++
Sbjct: 492 ISYEGKDGKKHTPVMLHRAILGSMERFIGILVEHYNGKFPLW---LSPIQVAVVNV-LNE 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +   ++  +L + G  V  D+  + +G++     L   P  VI+G++ VS+ K+ I
Sbjct: 548 EAQINRVHEVAKKLKEAGFRVEIDESNDNLGTKIKKYRLQRTPYTVIIGAEEVSNGKLSI 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R +   +DM L E +          
Sbjct: 608 RTRSSQEIKDMDLTEFMEKLQKESKER 634


>gi|90417791|ref|ZP_01225703.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337463|gb|EAS51114.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 659

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 149/430 (34%), Gaps = 42/430 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R        + + G   W P G +    + + +R  Q  
Sbjct: 236 YLHMLEE----AEKRDHRRLGREMDLFHFQEDAPGTVFWHPKGWRLYQTLVSYVRRRQEA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P L    LW  SG ++ Y ++M      +++     P +      IF+  +K
Sbjct: 292 EGYQEVNAPQLLERSLWETSGHWEKYHEDMFVTETEDERVFALKPMNCPGHVQIFKHGLK 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F  T E       K+    L
Sbjct: 352 SYRDLPLKIAEFGAVHRYEPSGALHGLMRVRAFTQDDAHVF-CTEEQITAESLKINDLIL 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G + + ++  + P     S E    A+     V             +      +
Sbjct: 411 SIYRDFGFEDVLVKLSTRPEKRVGSDELWDKAEASMRDVL-----AIIEEQGKGHITTAV 465

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
              +         Y                       R  +VG        ++LP    A
Sbjct: 466 AEGDGAFYGPKYEYTLRDA----------------IGRQWQVGTN---QVDFNLPGRFGA 506

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D +    V +    +G++     ++  +  G   +W   ++P ++ +  I +   
Sbjct: 507 FYIDRDSEKKTPVMLHRAMLGSVERFIGILIENCAGHLPLW---LSPLQVVVATITS--- 560

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L + G  V  D   E+I  +     +   P+ ++ G +   +  V I+
Sbjct: 561 EADDYALQVAEELRQAGLQVETDLRNEKINYKVREHSMAKVPVIMVCGKREAEERTVNIR 620

Query: 420 HRLTGIREDM 429
                 +  M
Sbjct: 621 RLGAREQTPM 630


>gi|322372498|ref|ZP_08047034.1| threonine--tRNA ligase [Streptococcus sp. C150]
 gi|321277540|gb|EFX54609.1| threonine--tRNA ligase [Streptococcus sp. C150]
          Length = 648

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 169/446 (37%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KTYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEDEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPADKHKYFDNDEMWENAQRMLKAAV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMGVE--YYEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWKVAKKLRDRGVRAEVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                     ++ E +       +  
Sbjct: 617 RYGQKQTHTETVSEFVENILADIARK 642


>gi|30264646|ref|NP_847023.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47530117|ref|YP_021466.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187467|ref|YP_030719.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49481700|ref|YP_038622.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52140935|ref|YP_085897.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|65321944|ref|ZP_00394903.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165871455|ref|ZP_02216102.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167636725|ref|ZP_02395009.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167642081|ref|ZP_02400304.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170689721|ref|ZP_02880895.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170708708|ref|ZP_02899146.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177653139|ref|ZP_02935426.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196042361|ref|ZP_03109631.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218905803|ref|YP_002453637.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225866553|ref|YP_002751931.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227817360|ref|YP_002817369.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228917215|ref|ZP_04080772.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929623|ref|ZP_04092641.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935883|ref|ZP_04098693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948301|ref|ZP_04110584.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093673|ref|ZP_04224773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229124142|ref|ZP_04253334.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229186832|ref|ZP_04313987.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229601552|ref|YP_002868855.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254686931|ref|ZP_05150789.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254720893|ref|ZP_05182684.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254736684|ref|ZP_05194390.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741722|ref|ZP_05199409.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254754681|ref|ZP_05206716.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757513|ref|ZP_05209540.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30259321|gb|AAP28509.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505265|gb|AAT33941.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181394|gb|AAT56770.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49333256|gb|AAT63902.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974404|gb|AAU15954.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|164712752|gb|EDR18282.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167509956|gb|EDR85379.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167527843|gb|EDR90677.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170126388|gb|EDS95277.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170666324|gb|EDT17113.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081663|gb|EDT66734.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196026805|gb|EDX65442.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218536622|gb|ACK89020.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225787158|gb|ACO27375.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
 gi|227005330|gb|ACP15073.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228596569|gb|EEK54234.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228659444|gb|EEL15092.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228689760|gb|EEL43567.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228811288|gb|EEM57626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823651|gb|EEM69473.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830010|gb|EEM75629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842416|gb|EEM87507.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229265960|gb|ACQ47597.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 645

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 176/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPEDTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|228993303|ref|ZP_04153219.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228766371|gb|EEM15014.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 643

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 294 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M     S   +  D +  
Sbjct: 413 KDFGLENYSFRLSYR--------------DPEDTKKYYADDEMWEKAQSMLKEAMDEMG- 457

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 458 -LEYYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 509 DGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 564 AKKVQEDLQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENGVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 624 KSETIALDAFVDMIK 638


>gi|332678497|gb|AEE87626.1| Threonyl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 634

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 156/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +     +P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELLPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+    V +    +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|229060032|ref|ZP_04197403.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228719251|gb|EEL70859.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 639

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 161/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   + +   R+      +L L   M  + + G+  +LP GQ   + + A +R  QN
Sbjct: 232 LEKHLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLRGIQN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F+  +
Sbjct: 290 EYNYQEVRTPFMMNQELWEKSGHWGHYKDNMY-FSEVDHKSFALKPMNCPGHMLMFKYKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWKQAEAALENVLHSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +      K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V I+ 
Sbjct: 554 HVEYANEVADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNIRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        + +
Sbjct: 614 YGEEKSEVVALDVFVASIEEEIKDKK 639


>gi|310658431|ref|YP_003936152.1| threonyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825209|emb|CBH21247.1| threonyl-tRNA synthetase [Clostridium sticklandii]
          Length = 637

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 160/445 (35%), Gaps = 46/445 (10%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ +++E   RD      +L L T +      G   +LP G    + +    RE     G
Sbjct: 231 YIQMMEEAKLRDHRKLGKELELFTLL--DEGPGFPFFLPKGTVLKNKLLEYWREVHREDG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + +  LW  SG + +Y + M  + + +++     P +      ++++ ++SY
Sbjct: 289 YVEIETPIILNRQLWETSGHWFNYKENMYTV-EIDEEDFAIKPMNCPGGMLVYQTKMRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++ P    +I    R EL     G+MR R F   DA+ F L PE  K     +     +I
Sbjct: 348 KDFPIRMGEIGRVHRHELSGALHGLMRVRAFTQDDAHIFML-PEQIKDEIKGVVSLIDKI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     +   + P            A++                  +   +   I 
Sbjct: 407 YKTFGFSY-HLELSTRPEKFLGEISMWDEAESNLKAALEELGLPYIINEGDGAFYGPKID 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         +    R  + G I      Y LP     ++
Sbjct: 466 F---------------------------HLRDCIGRTWQCGTI---QLDYQLPERFELSY 495

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H  V +     G++     ++   + GK  +W   +AP ++ ++ I       
Sbjct: 496 IGKDGEKHRPVMIHRVAFGSIERFIGILIEHYAGKFPLW---IAPVQVKILPI---SDKF 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I   +      V  DD  E+IG +   A L   P  +IVG K +++  + ++ R
Sbjct: 550 MDYAKQIEKAMYDAKIRVELDDRAEKIGYKIREAQLEKVPYMIIVGEKELNEGNISVRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
             G     + ++ +   +    + +
Sbjct: 610 DLGDLGFKNTDDFLKELNEEIISRK 634


>gi|319407312|emb|CBI80953.1| Threonyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 654

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 156/449 (34%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        + S G+  W P G K   N+ + +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEESPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKA-MIYGPTHEEVMTD 116
           +     E+  P +    LW  SG +  Y + M +      D ND+      P +      
Sbjct: 289 DNHKYAEVQAPQVLDKSLWEISGHWGWYKENMFKTIPAADDWNDECTYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPVRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIF-CTEEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G K I ++  + P     S E    A+   T V  +           
Sbjct: 408 SINDLILSTYADFGFKEISLKLSTRPEKRVGSDELWDHAENIMTSVLKT----------- 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +  S   +         A      E +            R  + G        ++
Sbjct: 457 ----IEEKSSGCVKISILPGEGAFYGPKFEYIL------TDAIGREWQCGTT---QVDFN 503

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +     G+M     ++  +  G    W   +AP +I + 
Sbjct: 504 LPERFGAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHIPFW---LAPQQIVVA 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  +KI  +L  +G     D   E+I  +     L   P+ ++ G +   
Sbjct: 561 TITSD---ANEYAKKITEKLKALGLSAKLDSRNEKINYKIREHSLQKIPVILVCGKQEAQ 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  + +E+V       
Sbjct: 618 TNSVNVRRLGSVEQTFLPIEKVFAQLLDE 646


>gi|284045075|ref|YP_003395415.1| threonyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283949296|gb|ADB52040.1| threonyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 643

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 154/453 (33%), Gaps = 52/453 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L    E   +A+   H+ + R   + Q    S G   WLP G    +++ A  RE
Sbjct: 231 FSKDDLAAHLERLEEAKKRDHRRLGRELKLFQFSAVSPGSAFWLPRGTSLWNSLVAFTRE 290

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G  E+  P +  ++LW  SG +D Y + M  +    D+ +   P +      +FR
Sbjct: 291 MNEPRGYQEVKTPLIFDSELWRTSGHWDKYRENMF-VTHAEDRDLAVKPMNCPGHAHLFR 349

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S   SYR LP  + +  L  R+E      G+MR R F   DA+ F  T E          
Sbjct: 350 SQRHSYRELPVRYSEPGLLHRNEPSGTLHGLMRVRHFAQDDAHIF-CTEEQVHGEVVACL 408

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                   R G + I +   + P     + E    A+         +         +   
Sbjct: 409 DLIFDTLGRFGFE-IDVELSTRPERRIGTDEMWDRAEGKLRAALEQQGLRYRVNEGDGAF 467

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
           +   I  +                                     +G  +  GT    YS
Sbjct: 468 YGPKIDFHVTDS---------------------------------IGRSWQLGTVQLDYS 494

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            P     T+ GAD ++H  V +    +G+      ++     G+  +W   +AP +  ++
Sbjct: 495 FPERFELTYVGADDREHRPVMIHRAAMGSYERFIGMLIEHWAGEFPVW---LAPVQAIVL 551

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I        D    + A+L      V  DD  E +G +   A+L   P  +++G +   
Sbjct: 552 PIA---DRHADYARDVVAQLRAARVRVELDDRTESVGRKIRDAELQKIPYMLVIGDRERE 608

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +V ++    G    + + E +          
Sbjct: 609 AGEVALRRHREGDEGSLPVAEFVARVVSETEQR 641


>gi|49474171|ref|YP_032213.1| threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|73919771|sp|Q6FZZ7|SYT_BARQU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49239675|emb|CAF26046.1| Threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 658

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 160/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEDGPGMIFWHQKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR----LADRNDKA-MIYGPTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M +    + D +DK      P +      
Sbjct: 289 DDHQYSEVNAPQVLDKSLWELSGHWGWYKENMFKAIPAIEDWDDKCIYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHSLKSYRDLPVRLAEFGVVHRYEPSGALHGLMRVRSFTQDDAHIF-CTDEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G K I ++  + P     S      A+            M+  + + 
Sbjct: 408 NINDLILSTYADFGFKEISLKLSTRPEKRVGSDSLWDHAEN----------IMESVLKTI 457

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            T F        I         A      E         K    R  + G        ++
Sbjct: 458 ETKFA-----GQIKTSILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 503

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +     G+M     ++  +  G   +W   +AP ++ + 
Sbjct: 504 LPERFDAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLW---LAPEQVVVA 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  +KI ARL  VG     D   E+I  +     L   P+ ++ G +   
Sbjct: 561 AITS---EANEYAKKITARLKAVGLSAKSDLRNEKINYKIREHSLQKVPVILVCGKREAE 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  +S+EE I    + 
Sbjct: 618 TNSVSMRRLGSTDQVFLSIEETIEQLKNE 646


>gi|229175285|ref|ZP_04302800.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228608117|gb|EEK65424.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 645

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|70733467|ref|YP_263242.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68347766|gb|AAY95372.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 629

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 142/436 (32%), Gaps = 39/436 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + Q   RD      +L L        + G   W   G      +   +R  Q + G
Sbjct: 231 YLLRLEQAQQRDHRKLGQQLDLF--HFDDCAPGSVFWHAKGWTLFQELIGYMRRRQEQAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P +    LW  SG + +Y   M     ++ +     P +      IF    KSY
Sbjct: 289 YQEVNTPDVMDRGLWETSGHWQNYRDHMFTTTTQDQRTFALKPMNCPGAVAIFGHGRKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F  TP+  +            I
Sbjct: 349 RDLPLRIAEFGKVHRYEPSGALHGLLRVRHFTQDDAHIF-CTPQQMQSECAATIALVFDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     S E     +        S        P E         
Sbjct: 408 YKEFGFDQVAVKLSTRPDHRIGSDEVWDQLEEALVGALQSMHIDYRINPGEG-------- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A         L D++  + +     +++        +++     ++  
Sbjct: 460 ------------AFYGPKLEFVLRDAIGRDWQCGTLQVDL----NLPERFA----ISYID 499

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+    V +     G++     ++   H G   +W   +AP +  ++NI    +   D
Sbjct: 500 ERGERCQPVMLHRALFGSLERFIGILLEHHGGALPLW---LAPQQAVVLNI---SEAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               I   L + G     D   E+IG +     L   P  ++VG K      V ++ R  
Sbjct: 554 YARAISDSLRRHGLRASADLRNEKIGYKIREHSLQKVPYLLVVGEKEKDGGYVSLRSRNG 613

Query: 424 GIREDMSLEEVINYAS 439
                +SLE+ +    
Sbjct: 614 EDLGRLSLEQALARMR 629


>gi|302387069|ref|YP_003822891.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197697|gb|ADL05268.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 629

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 155/443 (34%), Gaps = 47/443 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T M      G   +LP G    + +    R+   
Sbjct: 227 LEEYLTRMEEAKKRDHRKLGKELGLFTLM--DEGPGFPFFLPKGMILKNLLIDYWRKIHE 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R   +E+S P + S  LW  SG +D Y   M      +++     P +      +++S  
Sbjct: 285 RERYVEISTPMMLSRKLWETSGHWDHYKDNMYTTK-IDEEDFAIKPMNCPGGLLVYKSVP 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ L  R E      G+MR R F   DA+ + +T E        +    
Sbjct: 344 HSYRELPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIY-MTQEQITDEIKGVVRLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ + G K   +   + P     S     +A  G  +              +   +  
Sbjct: 403 DEVYSKFGFKY-HVELSTKPENSIGSEADWEIATCGLRKALDELQMNYVVNEGDGAFYGP 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
            I                               +    R  + G I   F    ++    
Sbjct: 462 KIDF---------------------------HLEDSIGRTWQCGTIQLDFQLPQRF---- 490

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + GADG+ H  + +     G++     ++     GK  +W   +AP +I ++ I   
Sbjct: 491 EAEYIGADGEKHRPIMIHRVVFGSIERFIGILIEHFAGKFPVW---LAPVQIKILPI--- 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +++  +L K       D+  E+IG +   A L   P  +I+G K      + 
Sbjct: 545 SEKFSTYSKEVLMKLKKADIRCEMDERDEKIGYKIREAQLEKVPYMLILGEKEAETGMLS 604

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           ++ R  G    MS+E++I+    
Sbjct: 605 VRSREQGDIGIMSIEKIIDLIKS 627


>gi|118479724|ref|YP_896875.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|118418949|gb|ABK87368.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 646

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 176/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 238 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 297 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 415

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 416 KDFGLENYSFRLSYR--------------DPEDTKKYYADDEMWEKAQGMLKEAMDEMGL 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 462 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 511

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 512 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 567 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 626

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 627 KSETIALDAFVDMIK 641


>gi|195440008|ref|XP_002067851.1| GK12501 [Drosophila willistoni]
 gi|194163936|gb|EDW78837.1| GK12501 [Drosophila willistoni]
          Length = 461

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 146/465 (31%), Positives = 227/465 (48%), Gaps = 45/465 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R SK F P+L   P+DA I        S KL+   G+I   S G Y  +P+ Q++LD   
Sbjct: 3   RASKIFWPML-VKPKDAVIKQTEQLSRSQKLLTELGLIKSGSNGTYQIMPIAQRSLDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++++     G  ++++P L S  LW +SGR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQQNMVEAGGQKITLPVLTSTALWKKSGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FDL+ E +K +
Sbjct: 122 TAMLATAAPISYRQLPLRLYQIGPKFRDELKSRFGMMRAKEFLMKDMYTFDLSQETAKDT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R F +L +  + + AE+G +GG LSHE+  ++  GE  +   +        
Sbjct: 182 YDIITKAYDRFFQQLEVPFVKVNAETGIMGGSLSHEYHYISSVGEDTLVKCE-------- 233

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           S     +  +   S            S VH                 G+EV H F  G K
Sbjct: 234 SCGFAGNAEVFHQSSNCPNCQKADNLSQVH-----------------GVEVAHTFLLGDK 276

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E     + + WP  +AP+ + +I 
Sbjct: 277 YSKPLGATFLNTSGKPQSLIMGCYGIGLSRVLAASLEVLSTDQELRWPKLLAPYDVCVIG 336

Query: 354 IKAHDQVCRDACEKI-YARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
            K   +      E++ Y  L  +G      +V  DD  +  IG +      LG P  ++ 
Sbjct: 337 PKQGSKEQT-LAERVEYNLLEHLGDICGSDEVLHDDRKDLTIGKRLLDGKRLGHPFIIVA 395

Query: 407 GSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           G+K V   D ++E+     G + +++L E +   +   S  + ++
Sbjct: 396 GAKSVLPEDPRLELHS-SDGNKMELNLNEALQMVNQYVSQKKHLI 439


>gi|225619668|ref|YP_002720925.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214487|gb|ACN83221.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 643

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 97/447 (21%), Positives = 170/447 (38%), Gaps = 42/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY   + +   RD      +L L +   H    G   W P G      V + IR E +
Sbjct: 226 LDKYLKKLKEAKERDHRKLGKELNLFS--FHDEGPGFPFWHPRGMIIYKAVESYIRNEND 283

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+  P + + +LW  SG +D+Y + M    + ++      P +      ++ S+I
Sbjct: 284 KRGYVEIKTPAILNEELWHRSGHWDNYKENMY-FTEIDETKYAVKPMNCPGGLIVYNSNI 342

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++    R EL     G+ R R F   DA+ F  T E            Y
Sbjct: 343 HSYRDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIF-CTEEQLGDEIINTIEYY 401

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++   G ++  +   + P     S E   LA                    +   +  
Sbjct: 402 LSVYKDFGFENFEIFVSTRPAKSIGSDEIWELATKSLINALDKLKISYKINEGDGAFYGP 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--S 299
            I  N                            K V  R  + G        +SLPM   
Sbjct: 462 KIDFN---------------------------IKDVLDRNWQCGT---LQVDFSLPMRFE 491

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +++G DGK H  V +    +G+M     ++   ++GK  +W   ++P +++++N+  ++
Sbjct: 492 ISYEGKDGKKHTPVMLHRAILGSMERFIGILVEHYNGKFPLW---LSPLQVAVVNV-LNE 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   ++   L   G  V  D+  + +G++     L   P  VI+G++ VS  K+ I
Sbjct: 548 KPQIDRTNEVAKALKDAGFRVEVDESNDNLGTKIKKYRLQRTPYTVIIGAEEVSSGKLSI 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R +   +DM L E I          
Sbjct: 608 RTRSSQEIKDMDLNEFIEKLKKESKER 634


>gi|118497781|ref|YP_898831.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323753|ref|ZP_03057529.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208779844|ref|ZP_03247188.1| threonyl-tRNA synthetase [Francisella novicida FTG]
 gi|166223342|sp|A0Q762|SYT_FRATN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118423687|gb|ABK90077.1| threonyl-tRNA synthetase [Francisella novicida U112]
 gi|194322117|gb|EDX19599.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208744299|gb|EDZ90599.1| threonyl-tRNA synthetase [Francisella novicida FTG]
          Length = 634

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 156/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +     +P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELLPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+    V +    +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|254373138|ref|ZP_04988627.1| threonine-tRNA ligase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570865|gb|EDN36519.1| threonine-tRNA ligase [Francisella novicida GA99-3549]
          Length = 634

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 156/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +     +P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELLPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+    V +    +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|319942329|ref|ZP_08016644.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804202|gb|EFW01102.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 636

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 140/448 (31%), Gaps = 49/448 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L     +AE   H+ + R      +   + G+  W   G      +   +R   
Sbjct: 229 KAYLEML----AEAEKRDHRRLGRELDLFHLQDEAPGMVFWHAKGWALWQVIEQFMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L    LW  SG +  Y   M      N +     P +      IF S 
Sbjct: 285 QDNGYEEVKAPQLLDRSLWERSGHWAKYRDNMFTTESEN-RYYALKPMNCPGHIQIFNSK 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    +     R+E      G+MR R F   D + F  T +            
Sbjct: 344 LRSYRDLPLRIGEFGQCHRNESSGSLHGLMRVRGFTQDDGHIF-CTEDQILAECEAFTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P            A+        +       +  E   + 
Sbjct: 403 VQKVYKTFGFTDIAYKVATRPAMRIGEDAVWDKAEHALMASLDALGIKYEVLVGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G +      + +P  +
Sbjct: 463 PKIEY---------------------------HLKDCLGRSWQCGTV---QVDFQMPGRL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D  +   V +    +G++     ++     G   +W   +AP + ++ +I  +
Sbjct: 493 GAEYVAEDNSRKIPVMLHRAILGSLERWIGMLIEEFAGAFPVW---LAPIQCAVTSITDN 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   + + A+L   G  V  D   E+I  +     L   P  ++VG K      V 
Sbjct: 550 ---QGAYAKDVAAKLHAAGLRVQTDLRSEKINYKIRELSLQKLPYILVVGEKEAQTGTVS 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       MSL+  I   S      
Sbjct: 607 VRARGGENLGVMSLDAFIERISTENRER 634


>gi|302035784|ref|YP_003796106.1| threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300603848|emb|CBK40180.1| Threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 651

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 152/435 (34%), Gaps = 38/435 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T +  +   G+  W P G      +    RE+  + G 
Sbjct: 236 LAKLEEIKRRDHRKLGKELDLIT-IQDEIGPGLVLWHPKGSLIRLLIENFWREQHIKDGY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +   DLW  SG  D Y + M              P +      I++SH++SYR
Sbjct: 295 DLVYSPHVARLDLWKTSGHVDYYRENMFASMKLEGSEYQLKPMNCPFHIMIYKSHMRSYR 354

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  + ++   +R E      G++R R F   DA+ F   P+  +   +++      + 
Sbjct: 355 DLPIRYGELGTVYRYERTGVLHGLLRVRGFTQDDAHLF-CRPDQIEAEVSRVLDFTFFVL 413

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     +   + P     S E   +A         S+       P E   +   I  
Sbjct: 414 GTFGFTEFEVYLSTRPDKSVGSEENWTIATNALEAALKSRGVAYEVDPGEGVFYGPKI-- 471

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                             + K+ D L  + + S   ++  +               + G 
Sbjct: 472 ------------------DIKIKDVLGRSWQCSTVQVDFNNPER--------FKLAYTGE 505

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H  + +    +G++     ++   + G    W   +AP +  ++ I  + Q   + 
Sbjct: 506 DGKAHQPIMIHRALMGSIERFFGILIEHYAGAFPTW---LAPVQAVVLTITDNQQ---EF 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             KI + L   G  V  D   E+IG +   A+    P  ++VG K V    V ++ R   
Sbjct: 560 AAKIVSTLKSHGFRVEADLRNEKIGFKIREAEKNKIPYMLVVGDKEVQSGMVAVRGRSGA 619

Query: 425 IREDMSLEEVINYAS 439
               M +E  +    
Sbjct: 620 NHGSMPIEAFLELLR 634


>gi|322517198|ref|ZP_08070081.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322124257|gb|EFX95773.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 648

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 168/446 (37%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEDEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPADKHKYFDNDEMWENAQRMLKAAV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMGVE--YYEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKELRDRGVRAEVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                     ++ E +       +  
Sbjct: 617 RYGQKQTHTETVSEFVENILADIARK 642


>gi|55820651|ref|YP_139093.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822542|ref|YP_140983.1| threonyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|116627458|ref|YP_820077.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|73919831|sp|Q5M0T3|SYT_STRT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919832|sp|Q5M5B9|SYT_STRT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122267944|sp|Q03LP1|SYT_STRTD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|55736636|gb|AAV60278.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus LMG 18311]
 gi|55738527|gb|AAV62168.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus CNRZ1066]
 gi|116100735|gb|ABJ65881.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Streptococcus
           thermophilus LMD-9]
 gi|312277977|gb|ADQ62634.1| Threonyl-tRNA synthetase ThrS [Streptococcus thermophilus ND03]
          Length = 648

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 169/446 (37%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEEEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPADKHKYFDNDEMWENAQRMLKAAV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMGVE--YYEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKKLRDRGVRAEVDERNEKMQFKIRASQTQKIPYQLIVGDKEMKDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                     ++ E +       +  
Sbjct: 617 RYGQKQTHTETVSEFVENILADIARK 642


>gi|288905772|ref|YP_003430994.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325978807|ref|YP_004288523.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732498|emb|CBI14070.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325178735|emb|CBZ48779.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 648

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   QE   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLF-VTPEQIQEEFQKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 406 IIDVYEDFNLTEYRFRLSLR--------------DPKDTHKYYDDDEMWENAQSMLKAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVE--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I +   ++
Sbjct: 502 TYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTVIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 557 AHVDYAWEVAKVLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      +++E ++      +  +RP
Sbjct: 617 RYGSKQTHTEAIDEFVDNILADINRKSRP 645


>gi|307179779|gb|EFN67969.1| Probable prolyl-tRNA synthetase, mitochondrial [Camponotus
           floridanus]
          Length = 422

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 132/443 (29%), Positives = 218/443 (49%), Gaps = 42/443 (9%)

Query: 3   RSKYFLPI---LQENPRDAEI-ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK F P+   L +     EI  SHKLM++ G+I   + G+Y+ LPLG + L+ +  ++ 
Sbjct: 1   MSKIFQPMATELSDTGDKTEISRSHKLMIKYGIIKPCNVGMYALLPLGMRVLNKLINLVD 60

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E    GA ++ +P L S  LW ++ RYDS   E+  + DR++K  I  PT+EE + D+ 
Sbjct: 61  KEMTNLGAEKILLPALTSTSLWKKTNRYDSNKNELFTIKDRHEKEYILSPTYEEAICDLI 120

Query: 119 RSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S    S + LP   YQI  K+RDE++PR G +RSREF+MKD Y+FD   + ++++Y+ +
Sbjct: 121 SSTGSLSTKLLPLRLYQISSKWRDEMKPRLGFLRSREFIMKDLYTFDTNLDNAQYTYDLV 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             SY  IF ++G+K   +  + G IGG +SHE+  +++ GE  +                
Sbjct: 181 CESYNNIFKQIGIKYEKVIGDVGTIGGLISHEYHYISNIGEDVIL--------------- 225

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                        Q  + Y + +   ++       +N+       E+GH F    KYS P
Sbjct: 226 -------------QCPSCYFSINQTISKTTNCPQCKNELQRHIAAEIGHTFLLNIKYSQP 272

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
           + A +     +   V MG +G+G  R++   IE       I WP  +AP+ + +I  KA 
Sbjct: 273 LKAMYV-EQNELKPVVMGCFGLGLSRIIMLTIEILSTINEIRWPVKLAPYTVCIIPPKAG 331

Query: 357 -HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGS---KFV 411
             ++      E++   L K   D   DD     IG +F +A  LGFP  +I+G    + +
Sbjct: 332 SKEENSSKYIEQLSEILCKRDIDTVLDDRTHLTIGKRFVLARALGFPYIIIIGKASTRSI 391

Query: 412 SDSKVEIKHRLTGIREDMSLEEV 434
                E+      +  ++SLE++
Sbjct: 392 PS--FEVHDINNSVTNELSLEQI 412


>gi|75812508|ref|YP_320127.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
 gi|75705264|gb|ABA24938.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
          Length = 614

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 171/451 (37%), Gaps = 42/451 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREE 60
           + + +L   +E  R D      +L L +  I +    G+  W P G      +    R+ 
Sbjct: 202 QLQAYLKQREEALRRDHRKLGQELNLFS--IQEDAGGGLVFWHPKGAIIRYIIEDYWRKS 259

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              +G   +  P + + DLW  SG +D Y + M    D  ++A    P +       ++ 
Sbjct: 260 HLESGYQLLYTPHIANLDLWKTSGHFDFYQENMFDSMDVENQAYQIKPMNCPFHVLTYKH 319

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR LP  + ++   +R E      G+MR R F   DA+ F L P         +  
Sbjct: 320 QLHSYRELPLRWAELGTVYRYERSGALHGLMRVRGFTQDDAHVFCL-PNQIADEILGVLN 378

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +I    G K+  +   + P     + E   LA +   Q   +K +            
Sbjct: 379 LTEQILSDFGFKNYEVNLSTRPEKSVGNDEVWELATSALRQALNTKGWNYIVDEGGG--- 435

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    + S   ++    F    ++     
Sbjct: 436 -----------------AFYGPKIDIKIQDAIGRLWQCSTIQVD----FNLPERF----D 470

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   DG +   + +     G++     ++  ++ G   +W   +AP ++ L+ +    
Sbjct: 471 MEYIAVDGSRQRPIMIHRAIFGSLERFFGILIENYSGDFPLW---LAPVQLRLLPV---S 524

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              R+  + +   L K G  V  D  GE++G Q   A+L   P+  +VG K V +  + +
Sbjct: 525 DEVREYAQLVVISLKKAGIRVETDSSGERLGKQIRTAELEKIPVVAVVGKKEVENQNLSV 584

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + R +G    ++++E+++       N++ VL
Sbjct: 585 RTRQSGDLGVLNMDEILHRLQDAI-NSKSVL 614


>gi|229096864|ref|ZP_04227833.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228686474|gb|EEL40383.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 639

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 161/445 (36%), Gaps = 38/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIEDEIKSVMGQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++      F   Y       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDV---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               + K   V +    +G++    A++     G    W   VAP ++ +I +   + V 
Sbjct: 503 ---KNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAVH 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++  +L++ G  +  D   E++G +   A +   P  +++G + + +  V ++  
Sbjct: 555 VQYANEVADKLAQAGVRIERDVRDEKLGYKIREAQMQKIPYVLVIGDREMENGFVNVRKY 614

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                E ++L+           N +
Sbjct: 615 GEEKSEVVALDVFAASMEEEIKNRK 639


>gi|302380527|ref|ZP_07268992.1| threonine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|303234012|ref|ZP_07320661.1| threonine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302311470|gb|EFK93486.1| threonine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302494937|gb|EFL54694.1| threonine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 634

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 163/446 (36%), Gaps = 41/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      ++ L +  I +   G   + P G   L+ +   ++E+  
Sbjct: 228 LDEYLDRMEEAKKRDHRKIGKEMGLFS--IQEEGPGFPFFHPNGMVVLNELEKFLKEQLL 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  ++  P + +  LW +SG +D Y + M      + +     P +      +++  +
Sbjct: 286 ERGYGQIKTPLILNEHLWHQSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGSILVYKDEL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R EL     G+ R R F+  DA+ F L PE  +   +K+    
Sbjct: 345 HSYRELPIKVAELGQVHRHELSGALHGLFRVRTFVQDDAHVFCL-PEQIEDEVSKIIDFC 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+ + G K   +   + P     S E   LA                 I S     + 
Sbjct: 404 DYIYSKFGFKY-EVELSTRPEDSMGSDEDWDLA-----------------ISSLKNALEH 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D H E              R  + G I     +       T
Sbjct: 446 KGLPYKINEGDGAFYGPKIDFHLEDAIG----------RTWQCGTI-QLDFQMPERFDMT 494

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +DG K     +    +G+      ++   + GK  +W   ++P ++ ++ I      
Sbjct: 495 YIASDGSKKRPAMIHRAILGSEERFMGILIEHYAGKFPLW---LSPVQVEILPI---SDK 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  ++   G  V  DD  E+IG +   + L      +I+G   + +++V ++ 
Sbjct: 549 FNDYAYELQQKMKARGLRVKVDDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRK 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G     + +E IN     + N +
Sbjct: 609 RDIGDVGSKNTDEFINELVDEYQNRK 634


>gi|312863291|ref|ZP_07723529.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311100827|gb|EFQ59032.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 648

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 168/446 (37%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D ++F   PE  +  + K+   
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVA-PEQIEDEFKKILQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +   +   D M            
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPADKHKYFDNDEMWENAQRMLKAAV 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DDMGVE--YYEAEGEAAFYGPKLDIQVKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 KHVDYAWEVAKELRDRGVRAEVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                     ++ E +       +  
Sbjct: 617 RYGQKQTHTETVSEFVENILADIARK 642


>gi|332024431|gb|EGI64629.1| Putative prolyl-tRNA synthetase, mitochondrial [Acromyrmex
           echinatior]
          Length = 437

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 129/436 (29%), Positives = 206/436 (47%), Gaps = 39/436 (8%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              D    SHKLM+  G+I   S G+Y+ LPLG + L+ +  I+ +E    GA ++ +P 
Sbjct: 27  EKTDITSKSHKLMINYGIIKPLSIGMYALLPLGMRILNKLIDIVDKEMMNIGAQKILLPA 86

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS---HIKSYRNLPF 130
           L  A LW ++ RYDS   E+  L DR+ K  I  PTHEE + D+       +   + LP 
Sbjct: 87  LTPAALWKKTDRYDSNKTELFTLTDRHKKEYILSPTHEEAICDLISLAGPTVPISKLLPL 146

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQI  K+RDE++PR G +RSREF+MKD Y+FD + + ++H+Y+ +  SY  IF ++G+
Sbjct: 147 KLYQISSKWRDEMKPRLGFLRSREFIMKDLYTFDSSLDNARHTYDLVCESYNNIFRQIGI 206

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           K      + G IGG +SHE+  ++D GE  +            S +              
Sbjct: 207 KYTKSIGDVGTIGGLMSHEYHYVSDIGEDTILQCPSCHFSINQSIS-------------- 252

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                         +       +N+  S    EVGH F   TKYS P+   F     K  
Sbjct: 253 --------------KTTSCPECKNELHSYTAAEVGHTFLLDTKYSRPLEVMFFMEQNKPT 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKI 368
            + MG +G+G  R++  V+E       + WP  +AP+ + +I  KA   ++      E++
Sbjct: 299 PMVMGCFGLGLSRIITLVVEILSINDEMRWPVKLAPYTVCIIPPKAGSKEESTSAYIEQL 358

Query: 369 YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV---EIKHRLTG 424
           +    K   D   DD     IG +   A LLG+P  +++G    +   +   EI      
Sbjct: 359 FEIFYKRNIDTILDDRTHYTIGKRLVFARLLGYPYIIVIGK--AATQSIPLFEIHDVNNS 416

Query: 425 IREDMSLEEVINYASH 440
              ++SL+++ +Y  +
Sbjct: 417 TYHELSLDQMNDYFDN 432


>gi|294852343|ref|ZP_06793016.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820932|gb|EFG37931.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 683

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 159/449 (35%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R        +   G+  W   G K   N+ + +R   
Sbjct: 258 QAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGAGVVFWHAKGWKMFQNLVSYMRRRL 313

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +  G  E++ P +    LW  SG +  Y   M ++        +D+     P +      
Sbjct: 314 DSHGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQ 373

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       
Sbjct: 374 IFKHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECL 432

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L ++   G + I ++  + P     S E    A++    V              
Sbjct: 433 RINDLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------- 479

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                     N+I         A      E         K    R  + G        ++
Sbjct: 480 ---EQIRQQSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 527

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A + GAD  K   V +     G+M     ++  +  G   +W    AP ++ + 
Sbjct: 528 LPERFGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPVQVVVA 584

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   
Sbjct: 585 TITSD---ADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAE 641

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +E M+L+E I      
Sbjct: 642 EKTVNMRRLGSRDQESMTLDEAIARLCEE 670


>gi|167752344|ref|ZP_02424471.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
 gi|167660585|gb|EDS04715.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
          Length = 651

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 173/454 (38%), Gaps = 44/454 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L      +  +G+  WLP G    D +   +R  Q 
Sbjct: 227 LDEYLAMMEEAKKRDHRKLGKELELFC-FSQRVGQGLPLWLPKGAALRDRLEQFLRGVQK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G  ++  P + + +L+V SG Y  YGK+  +        +  +  P +     +I+RS
Sbjct: 286 EYGYQQVITPHIGNKELYVTSGHYAKYGKDSFQPIHTPIEGEEYLLKPMNCPHHCEIYRS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP    +    +R E      G+ R R F   DA+ F + P+     + K+  
Sbjct: 346 KPRSYKELPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHMF-VRPDQLLEEFEKVID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L IF  L   +   +                  D    + +   D       S     
Sbjct: 405 IVLYIFKTLKFDNYTAQISLR--------------DPNNKEKYIGSDENWEKAESAIIQA 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                LN+++E   A +                  +    R  ++G I      Y+LP  
Sbjct: 451 AKEKGLNTVIEYGEAAFYGPKLDF---------MVRDAIGRKWQLGTI---QVDYNLPER 498

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+KGAD K H  + +     G+M    AV+     GK  +W   ++P ++ ++ I  
Sbjct: 499 FDLTYKGADDKMHRPIMIHRAPFGSMERFVAVLLEHTGGKFPLW---LSPDQVVVLPI-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D  EK+ A L+K       DD  E+IG +    +L   P  +IVG K  ++  V
Sbjct: 554 -SEKFNDYAEKVSAYLNKYDIRSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLV 612

Query: 417 EIKHRLTGIREDMSLEEVINY----ASHRFSNNR 446
            ++ +  G +  M+LE   +Y     SH    N+
Sbjct: 613 SVRAQGEGDKGQMTLEAFRDYMTDLVSHEIDANK 646


>gi|332529095|ref|ZP_08405059.1| threonyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
 gi|332041318|gb|EGI77680.1| threonyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 644

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 150/443 (33%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + +HS G   W P G      V   +R      G
Sbjct: 231 YILRMEEAEKRDHRKLGRELDLF--HLDEHSPGTVFWHPKGWTVWQEVEQYMRRVYRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M        +     P +      I++  +KSY
Sbjct: 289 YREVKGPQILDKSLWEKTGHWDKYRENMFTTESEK-RDYALKPMNCPGHILIYKQGVKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 348 RDLPLRYGEFGACHRNEPTGGLHGIMRVRAFTQDDGHIF-CTEDQIQAEVKAFTSLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     S E    A+    +   +       +P E   +   I 
Sbjct: 407 YKDFGFTEIIYKLSTRPEKRIGSEESWDRAENALAEGLRASGCEFDYLPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         K    R  + G I          + A F G
Sbjct: 467 YTL---------------------------KDALGRQWQCGTI-QVDPNLPERLDAEFVG 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCR 362
            DG  H  V +    +G++     ++   H G    W   +AP +++++NI       C+
Sbjct: 499 EDGGRHRPVMLHRAIVGSLERFIGILIEQHGGALPAW---LAPTQVAVLNITDAQADYCQ 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+   L      V  D   E+I  +     +   P  ++ G K  +   V ++ R 
Sbjct: 556 EIAQKLRKALPNQELRVETDLRNEKITYKIREHSMQKLPFILVAGDKEKAAGAVAVRARG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MSL+  I   +   ++ 
Sbjct: 616 NKDLGVMSLDAFIQLIAQDIAHK 638


>gi|332878705|ref|ZP_08446422.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683342|gb|EGJ56222.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 647

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 161/447 (36%), Gaps = 40/447 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q 
Sbjct: 227 LTEYLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G  ++  P +   +L+V SG +D YGK+  +        +  +  P +     +I+ S
Sbjct: 286 EAGYEQVVTPHIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H  SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +  
Sbjct: 346 HPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDAEFKHVID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG  +   +                      T+   + +       +     
Sbjct: 405 LVLYVFGSLGFDNFTAQVSLRD-------------PDNPTKYIGTDENWAKAENAIINAA 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            +      I     A Y    D   +              R  ++G I      Y+LP  
Sbjct: 452 KEKGLNYVIETGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPER 498

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +KGAD + H  V +     G+M    A++     G   +W   + P +  ++++  
Sbjct: 499 FDLWYKGADNEMHRPVMIHRAPFGSMERFVAILLEHTAGNFPLW---LNPNQAIVLSL-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   +  +K+   L         D+  E +G +   A+    P  +IVG     +  V
Sbjct: 554 -SEKYENYAQKVLRLLENSDIRTLIDNRAETMGKKIREAETQKVPYMLIVGENEEKEGTV 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R       MS+E      +   +
Sbjct: 613 SVRKRGGEDLGSMSVEAFAKLINDEVA 639


>gi|261855919|ref|YP_003263202.1| threonyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261836388|gb|ACX96155.1| threonyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 637

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 149/445 (33%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L     +AE   H+ + +        + + G+  W P G      +   +R
Sbjct: 226 KELKVYLNQL----AEAEKRDHRRIGKQQNLFHFQEEAPGLVFWHPKGWALWQVIEQHMR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                +G  E+  P +    LW +SG +D+Y + M    +   +     P +      +F
Sbjct: 282 GIYRSSGYDEIRCPQILDVSLWKKSGHWDNYQENMF-FTESEKRTFAVKPMNCPGHVQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              + SYR+LP  + +     R+E      G++R R F   D + F +     +      
Sbjct: 341 NHGLHSYRDLPIRYGEFGSCHRNEPSGALHGILRVRGFTQDDGHIFCM-ESQIESEVKAF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I ++    P     S      A+        +       +P E  
Sbjct: 400 HEQALSVYATFGFTDIQVKIALRPDKRLGSDVVWDEAEAALRGALRAAGVAWTELPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                       L D++    ++    ++       G      
Sbjct: 460 FYGPKIEY--------------------HLKDAIGRTWQLGTIQVDFMMPERLG------ 493

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             AT+      + H V +    +G+M     ++   H G    W   +AP ++ ++ I  
Sbjct: 494 --ATYVDEHSERRHPVMLHRAIVGSMERFIGILIEHHAGMLPFW---LAPIQVVVMGITD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    +++ A+L   G  V  D   E++G +     L   P  ++ G + +    +
Sbjct: 549 KHAG---YVQQLTAKLKASGIRVVEDLRNEKVGFKIREHTLERVPYLLVAGDREMETESI 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ R       M++ +++      
Sbjct: 606 AVRTREGTDLGVMAVTDLLEKLQSE 630


>gi|321472321|gb|EFX83291.1| hypothetical protein DAPPUDRAFT_127919 [Daphnia pulex]
          Length = 406

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 127/431 (29%), Positives = 204/431 (47%), Gaps = 38/431 (8%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            KL+   G++ Q+S G+++  PLG ++L+ +  I+ +E    G  ++ +P L + +LW  
Sbjct: 5   QKLLNEMGIVRQNSPGLFTLTPLGVRSLEKLVKIVDDELKYVGCQKLQLPILTAGNLWKT 64

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI-KSYRNLPFTFYQIQLKFRD 141
           +GR++S G E+L + DR+ +  +  PTHEE +TD   S    +++ LP   YQI  KFRD
Sbjct: 65  TGRWESTGSELLTIKDRHARDYVLSPTHEEAITDFVASLPQLTHKQLPLKLYQITSKFRD 124

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E++PRFG++R REF MKD Y+FD T E +  +Y+ +  +Y RIF RL +  + +   +G 
Sbjct: 125 EIKPRFGLLRGREFTMKDLYTFDKTVEAAHETYDLICTAYNRIFQRLNVPFVKVVGSTGN 184

Query: 202 IGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           IGG  SHE+   +  GE     CS            TD                      
Sbjct: 185 IGGLSSHEYHFPSSIGEDDLKICSACNSGSNAEIATTDVCSKCGSPV------------- 231

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                              +GIEV H F  GTKYS  ++A F   DG     QMG YGIG
Sbjct: 232 ----------------KQTKGIEVAHTFLLGTKYSQILNALFSAEDGSRSVCQMGCYGIG 275

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKV--- 375
             R++AA +E       I WP  +AP+ + ++  K  + ++        +  ++ ++   
Sbjct: 276 ISRILAASVEVLGTDSEIRWPKLIAPYSVCVVAPKGGSKEESAIQLAHFLANQIDQIQPF 335

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEE 433
             DV  DD     +G +   A  +G+P  ++VG K       VE+       +   ++ E
Sbjct: 336 MQDVILDDRMTTTVGKKLMEAKRVGYPYIIVVGKKSSQPVPLVELHDLNQNTQNVYTVAE 395

Query: 434 VINYASHRFSN 444
           + +Y      N
Sbjct: 396 LFDYLKQTVKN 406


>gi|306833981|ref|ZP_07467104.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304423847|gb|EFM26990.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 666

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   QE   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 247 KAYLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEV 304

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H
Sbjct: 305 ASGYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 364

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + K    
Sbjct: 365 VHSYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLF-VTPEQIQEEFQKALQL 423

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     S      
Sbjct: 424 IIDVYEDFDLTEYRFRLSLR--------------DPKDTHKYYDDDEMWENAQSMLKAAL 469

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + +     +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 470 DEMGVE--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----GL 519

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   G+ + M    A++  ++ G    W   +AP ++++I +   ++
Sbjct: 520 TYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTVIPVS--NE 574

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 575 AHVDYAWEVAKVLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVR 634

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRP 447
              +      +++E ++      +  +RP
Sbjct: 635 RYGSKQTHTEAIDEFVDNILADINRKSRP 663


>gi|24379968|ref|NP_721923.1| threonyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|73919830|sp|Q8DT12|SYT_STRMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24377953|gb|AAN59229.1|AE014990_3 putative threonyl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 649

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 171/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KSYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRIIERYITDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S DL+  SG +D Y ++M    D  D ++ +  P +     +++++H
Sbjct: 287 ASGYQHVYTPPIASVDLYKTSGHWDHYREDMFPTMDMGDGESFVLRPMNCPHHIEVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + +    
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVEDEFKRTLQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYSFRLSYR--------------DPNDTHKYFDDDEMWEKSQTMLKAAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      + ++  +L  ++ +S   ++    F    ++      
Sbjct: 452 DDMGLD--YYEAEGEAAFYGPKLDIQVKTALGNDETLSTIQLD----FLLPERF----EL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   GI +      A +  ++ G    W   +AP ++++I I   ++
Sbjct: 502 TYIGADGEEHRPVMIHRGIVSTMERFTAYLIETYKGAFPTW---LAPHQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K V +  V ++
Sbjct: 557 AHIDYAWEVAKELRDHGIRADVDDRNEKMQYKIRQSQTKKVPYQLIVGDKEVENGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +      S+ E            
Sbjct: 617 RYGSKQTHTESIAEFRENILADIKRK 642


>gi|301056082|ref|YP_003794293.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378251|gb|ADK07155.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 645

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPEDTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++ L     + G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERFELA----YVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|15596153|ref|NP_249647.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|107100413|ref|ZP_01364331.1| hypothetical protein PaerPA_01001438 [Pseudomonas aeruginosa PACS2]
 gi|218893073|ref|YP_002441942.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|81857350|sp|Q9I502|SYP_PSEAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701320|sp|B7UXX6|SYP_PSEA8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|9946862|gb|AAG04345.1|AE004529_11 prolyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|218773301|emb|CAW29113.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 571

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 164/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSD 225



 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           +      +  +   P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 EDKHYFGVNWERDLPLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +     GK   + MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   
Sbjct: 424 KLSVLSEQGKPVNLIMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  + A +K+YA L+  G +V  DD  ++   G +FA  +L+G P ++++  + +S+  +
Sbjct: 484 ESVKQATDKLYAELTAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLSEGVL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     +++ + E++++ + + S
Sbjct: 544 EYKGRRDSESQNLPIGELMSFITEKLS 570


>gi|169824388|ref|YP_001691999.1| threonyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|238687735|sp|B0S169|SYT_FINM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167831193|dbj|BAG08109.1| threonyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 634

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 162/446 (36%), Gaps = 41/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      ++ L +  I +   G   + P G   L+ +   ++E+  
Sbjct: 228 LDEYLDRMEEAKKRDHRKIGKEMGLFS--IQEEGPGFPFFHPNGMVVLNELEKFLKEQLL 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  ++  P + +  LW +SG +D Y + M      + +     P +      +++  +
Sbjct: 286 ERGYGQIKTPLILNEHLWHQSGHWDHYKENMY-FTKIDGEDYAIKPMNCPGSILVYKDEL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R EL     G+ R R F+  DA+ F L PE  +   +K     
Sbjct: 345 HSYRELPIKVAELGQVHRHELSGALHGLFRVRTFVQDDAHVFCL-PEQIEEEVSKTIDFC 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+ + G K   +   + P     S E   LA                 I S     + 
Sbjct: 404 DYIYSKFGFKY-EVELSTRPEDSMGSDEDWDLA-----------------ISSLKNALEH 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D H E              R  + G I     +       T
Sbjct: 446 KGLPYKINEGDGAFYGPKIDFHLEDAIG----------RTWQCGTI-QLDFQMPERFDMT 494

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +DG K     +    +G+      ++   + GK  +W   ++P ++ ++ I      
Sbjct: 495 YIASDGSKKRPAMIHRAILGSEERFMGILIEHYAGKFPLW---LSPVQVEILPI---SDK 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  ++   G  V  DD  E+IG +   + L      +I+G   + +++V ++ 
Sbjct: 549 FNDYAYELQQKMKARGLRVKVDDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRK 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G     + +E IN     + N +
Sbjct: 609 RDIGDVGSKNTDEFINELVDEYQNRK 634


>gi|153870648|ref|ZP_02000004.1| threonyl-tRNA synthetase, class IIa [Beggiatoa sp. PS]
 gi|152072888|gb|EDN69998.1| threonyl-tRNA synthetase, class IIa [Beggiatoa sp. PS]
          Length = 390

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 157/428 (36%), Gaps = 44/428 (10%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
             +L L    + + + G+  W   G +    +   IR    +    E+  P L    LW 
Sbjct: 2   GKQLDLF--HVQEEAPGMVFWHDKGWQIYIIIQNYIRHLLRQHHYQEVHTPQLVDRSLWE 59

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +SG +D +G +M      N +     P +      IF   +KSYR+LP    +     R+
Sbjct: 60  KSGHWDKFGDDMFVTQSEN-REYAVKPMNCPCHIQIFNQGLKSYRDLPLRLAEFGSCHRN 118

Query: 142 ELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           E      G+MR R F+  DA+ F  T +  +   +       +++   G K+I ++  + 
Sbjct: 119 EASGTLHGLMRIRGFVQDDAHIF-CTDDQIQQEVSDFIDLLFKVYTDFGFKNILIKLSTR 177

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P     S E    A+        +K       P E   +   I                 
Sbjct: 178 PEKRVGSDEVWDKAEKALELALNNKKLAWDLQPGEGAFYGPKIEF--------------- 222

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSY 317
                         K    R  + G I      +S+P  + AT+  ADG K   V +   
Sbjct: 223 ------------VLKDCLDRVWQCGTI---QVDFSMPDRLGATYIAADGSKQVPVMLHRA 267

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++     V+   + G   +W   +AP ++ ++NI        D  ++I  +L K G 
Sbjct: 268 ILGSLERFIGVLIEEYAGALPLW---LAPVQVVILNIT---DEHADYAKQIEVKLLKEGF 321

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  D   E+IG +     L   P  +I+G + +   +V ++ R    +  M ++  I  
Sbjct: 322 RVESDLRNEKIGFKIREHTLQKIPYLLIIGGREIETQQVTVRLRNGEDKGAMLIDTFIEQ 381

Query: 438 ASHRFSNN 445
                ++ 
Sbjct: 382 LRSEIASY 389


>gi|255534998|ref|YP_003095369.1| threonyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341194|gb|ACU07307.1| Threonyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 639

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 161/445 (36%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L +      +   G+  WLP G      +   + E Q 
Sbjct: 226 LTEYLERLEEAKRRDHRKLGKELGIFA-FSEKVGAGLPLWLPKGAALRKKLENFLSEAQK 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P + + +L+V SG +D YG +  +        +  +  P +     +I++ 
Sbjct: 285 KAGYEFVMTPHIGAKELYVTSGHWDKYGADSFQPIKTPNEGEEFMLKPMNCPHHCEIYKV 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY++LP  F +    +R E      G+ R R F   DA+ F  TP+     +  +  
Sbjct: 345 GQWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CTPDQLLTEFENVID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG +    +                  D    + +   D       +EN   
Sbjct: 404 LTLYVFKSLGFEDFVTQISLR--------------DPENKEKYIGSDENWK--KAENAII 447

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                            A      +  + D+L        R  ++G I      Y+LP  
Sbjct: 448 QAAAKKGLKTVVEYGEAAFYGPKLDFMVKDALG-------RSWQLGTI---QVDYNLPER 497

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G+D + H  V +     G+M    A++  +  G   +W   +AP + +++ I  
Sbjct: 498 FDLWYIGSDNEKHRPVMIHRAPFGSMERFIAILLENTAGDFPLW---LAPDQFTILPI-- 552

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D  +K+   L         DD  E+ G +   A++   P  ++VG     +  V
Sbjct: 553 -SEKYADYAKKVSELLENHDICGLIDDRNEKTGRKIRDAEIKKLPFMLVVGETEELNGTV 611

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ R  G    MS+E+ I Y   +
Sbjct: 612 SVRRRGEGDLGTMSVEDFIAYFKEQ 636


>gi|217962055|ref|YP_002340625.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222098038|ref|YP_002532095.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|229141301|ref|ZP_04269839.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|217064460|gb|ACJ78710.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221242096|gb|ACM14806.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|228642082|gb|EEK98375.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 645

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 176/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 415 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 461 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 510

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 566 AKKVQDELRRAGMRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 625

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 626 KSETIALDAFVDMIK 640


>gi|116048881|ref|YP_792318.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313105843|ref|ZP_07792106.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|122257988|sp|Q02IB8|SYP_PSEAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115584102|gb|ABJ10117.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878608|gb|EFQ37202.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 571

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 164/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSD 225



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           +      +  +   P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 EDKHYFGVNWERDLPLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   GK   + MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   
Sbjct: 424 KLNVLSEQGKPVNLIMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  + A +K+YA L+  G +V  DD  ++   G +FA  +L+G P ++++  + +++  +
Sbjct: 484 ESVKQATDKLYAELTAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLNEGVL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     +++ + E++++ + + S
Sbjct: 544 EYKGRRDSESQNLPIGELMSFITEKLS 570


>gi|311280836|ref|YP_003943067.1| prolyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308750031|gb|ADO49783.1| prolyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 572

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDTSDYAA 231



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGTKYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A  +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 NAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G +V  DD  E+ G  FA  +L+G P  V++G + + +  +E
Sbjct: 486 SYRVQELAEKLYAELRAQGIEVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y      
Sbjct: 546 YKYRRNGDKQLIKTGDILDYLVKAIK 571


>gi|296390688|ref|ZP_06880163.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 571

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 164/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSD 225



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           +      +  +   P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 EDKHYFGVNWERDLPLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   GK   + MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   
Sbjct: 424 KLNVLSEQGKPVNLIMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  + A +K+YA L+  G +V  DD  ++   G +FA  +L+G P ++++  + +++  +
Sbjct: 484 ESVKQATDKLYAELTAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLNEGVL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     +++ + E++++ + + S
Sbjct: 544 EYKGRRDSESQNLPIGELMSFITEKLS 570


>gi|229163567|ref|ZP_04291517.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228619949|gb|EEK76825.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 646

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 174/435 (40%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 238 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 297 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 415

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D + L
Sbjct: 416 KDFGLENYSFRLSYR--------------DPADTKKYYADDEMWEKAQGMLKEAMDEMGL 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++ L     + G 
Sbjct: 462 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERFELA----YVGE 511

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP +  +I +    QV  D 
Sbjct: 512 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQAQVIPVSP--QVHLDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 567 AKKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQ 626

Query: 425 IREDMSLEEVINYAS 439
             E ++L   ++   
Sbjct: 627 KSETIALAAFVDMIK 641


>gi|182419627|ref|ZP_02950872.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237665561|ref|ZP_04525549.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376517|gb|EDT74094.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237658508|gb|EEP56060.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 636

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 162/444 (36%), Gaps = 47/444 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T    +   G   +LP G    +++    R+     G 
Sbjct: 233 LNNLEEAKKRDHRKLGKELKLFT--FAEEGPGFPFFLPKGVILKNSLIDFWRKIHYEAGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +  LW  SG +  Y + M      +D+     P +      +++S   SYR
Sbjct: 291 VEVETPIMLNKKLWETSGHWYHYKENMYTSM-IDDEEFALKPMNCPGGMIVYKSDSHSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    ++    R EL     G+MR R F   DA+ F L PE  K     +     +++
Sbjct: 350 DFPMRVGELGRVHRHELSGALHGLMRVRAFTQDDAHIFML-PEQIKSEIKGVVELIDKVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G K   +   + P     S E   +A+                  S     D++   
Sbjct: 409 SIFGFKY-HVELSTRPEDSMGSDEEWKMAE-----------------DSLRGALDELNLQ 450

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATF 302
             I E   A Y    D H E              R  + G I   F    ++       +
Sbjct: 451 YVINEGDGAFYGPKIDFHLEDSIG----------RTWQCGTIQLDFQLPQRF----ELEY 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+D + H  + +     G++     ++     GK   W   +AP ++ ++ I       
Sbjct: 497 VGSDNEKHRPIVIHRVIFGSIERFIGILIEHFAGKFPTW---LAPVQVKVLPI---SDKF 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + C+++  + ++ G  V  D   E+IG +   A     P  VI+G K   +  + ++ R
Sbjct: 551 NNYCDEVVKQFNENGIRVEIDQRNEKIGYKIREARNERVPYIVIIGEKEEGEGNISLRSR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    ++++++I   ++   N 
Sbjct: 611 KNGDEGSINVKDLIERINNEIKNK 634


>gi|296127837|ref|YP_003635089.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296019653|gb|ADG72890.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 643

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 97/447 (21%), Positives = 171/447 (38%), Gaps = 42/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY   + +   RD      +L L +   H+   G   W P G      V + IR E +
Sbjct: 226 LDKYLKRLKEAKERDHRKLGKELNLFS--FHEEGPGFPFWHPRGMVIYKAVESYIRNEND 283

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+  P + + +LW  SG +D+Y + M    + ++      P +      ++ S+I
Sbjct: 284 KRGYVEIKTPAILNEELWHRSGHWDNYKENMY-FTEIDETKYAVKPMNCPGGLIVYNSNI 342

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    ++    R EL     G+ R R F   DA+ F  T E            Y
Sbjct: 343 HSYRDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIF-CTEEQLGDEIINTIEYY 401

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++   G ++  +   + P     S E   LA                    +   +  
Sbjct: 402 LSVYKDFGFENFEIFVSTRPAKSIGSDEIWELATKSLINALDKLGIKYKINEGDGAFYGP 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM--S 299
            I  N                            K V  R  + G        +SLPM   
Sbjct: 462 KIDFN---------------------------IKDVLDRNWQCGT---LQVDFSLPMRFE 491

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +++G DG+ H  V +    +G+M     ++   ++GK  +W   ++P +++++N+   +
Sbjct: 492 ISYEGKDGRKHTPVMLHRAILGSMERFIGILVEHYNGKFPLW---LSPLQVAVVNV-LDE 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   ++   L   G  V  D+  E +G++     L   P  VI+G++ VS+ K+ I
Sbjct: 548 KSQIDRVNEVAKALKDAGFRVETDEGNENLGTKIKKYRLQRTPYTVIIGAEEVSNGKLSI 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R +   +DM L E I          
Sbjct: 608 RTRSSQEIKDMDLNEFIEKLKKESKER 634


>gi|213963363|ref|ZP_03391619.1| threonyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213954031|gb|EEB65357.1| threonyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 647

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 86/437 (19%), Positives = 158/437 (36%), Gaps = 40/437 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T   ++  +G+  WLP G    + + A +R+ Q + G  ++  P
Sbjct: 237 AKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG +D YGK+  +        +  +  P +     +I+ SH  SY++LP 
Sbjct: 296 HIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPK 355

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     +  +    L +F  LG
Sbjct: 356 RFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDDEFKHVIDLVLYVFGSLG 414

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                      ++   S +       +      +      I 
Sbjct: 415 FDNFTAQVSLRD-------------PENLSKYIGSDENWAKAENAIINAAKEKGLNYVIE 461

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
               A Y    D   +              R  ++G I      Y+LP      +KGAD 
Sbjct: 462 TGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPERFDLWYKGADN 508

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    A++     G   +W   + P +  ++++    +   +  +
Sbjct: 509 EMHRPVMIHRAPFGSMERFVAILLEHTAGNFPLW---LNPNQAIILSL---SEKYENYAQ 562

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ + L         D+  E +G +   A+    P  +IVG     +  V ++ R     
Sbjct: 563 KVLSLLENSDIRTLIDNRAETMGKKIREAETQKIPYMLIVGENEEKEGTVSVRKRGGEDL 622

Query: 427 EDMSLEEVINYASHRFS 443
             MS+E      +   +
Sbjct: 623 GSMSVEAFAKLINDEVA 639


>gi|121601812|ref|YP_988945.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|166223323|sp|A1USJ2|SYT_BARBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120613989|gb|ABM44590.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 658

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 158/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        +   G+  W P G K   N+ + +R   
Sbjct: 233 KAYLNMLEE----AEKRDHRRLGREMDLFHFQEEGPGMIFWHPKGWKMFQNLVSYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKA-MIYGPTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M +      D ND+      P +      
Sbjct: 289 DEHKYDEVNAPQVLDKSLWETSGHWGWYQENMFKTIPATNDWNDEHVYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLLHRYEPSGSLHGLMRVRSFTQDDAHVF-CTDEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L  +   G + I ++  + P     S E    A+     V  +           
Sbjct: 408 KINDLILSTYADFGFEEIILKLSTRPEKRVGSDELWDHAENIMMSVLKT----------- 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +  +   I         A      E         K    R  + G        ++
Sbjct: 457 ----IEKEAKGRIKTSILQGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFN 503

Query: 296 LP--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      +   D +    V +     G+M     ++  +  G   +W   +AP +I + 
Sbjct: 504 LPERFEVFYINRDSEKCQPVMIHRAIFGSMERFLGILIENFAGHMPLW---LAPQQIVVT 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  EKI A+L   G     D   E+I  +     L   P+ ++ G +   
Sbjct: 561 TITS---EANEYAEKITAKLKASGLSAVSDLRSEKINYKIREHSLQKVPVILVCGKRESE 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  + +++ I   ++ 
Sbjct: 618 TNSVNMRRLGSMNQISLPIDQAIKQLTNE 646


>gi|209966088|ref|YP_002299003.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
 gi|238065118|sp|B6IV67|SYT_RHOCS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209959554|gb|ACJ00191.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
          Length = 651

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 158/437 (36%), Gaps = 49/437 (11%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R      + + + G   W P G      +   IR + +  G +E+  P 
Sbjct: 238 EAEKRDHRKLGREMDLFHVQEEAVGSVFWHPKGWALYRTLENYIRTKLDAAGYVEVRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           L  + L+  SG +D YG  M ++      D  +K +   P +      IFR  +KSYR+L
Sbjct: 298 LYDSSLFKASGHWDMYGDNMFKIRESVAEDGTEKFLGVKPMNCPAHVQIFRQGLKSYRDL 357

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G++R R F   DA+ F  T +       + F   L ++  
Sbjct: 358 PLRMAEFGNCHRNEPSGALHGILRVRNFTQDDAHIF-CTEDQVGQEAKEYFALQLGVYKD 416

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           LG   I ++    P     + E    A+        + D     +P E   +   +  + 
Sbjct: 417 LGFDKIAVKLALRPDVRLGTDETWDKAEESLRVALRANDLEFEELPGEGAFYGPKVEFHL 476

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                                           R  + G        + LP  + A++ G 
Sbjct: 477 TD---------------------------AIGRSWQCGT---LQLDFQLPERLDASYIGQ 506

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG  H  V +    +G++     ++   + GK  +W   +AP ++ +  I +        
Sbjct: 507 DGARHRPVMLHRAILGSLERFIGMMIEHYAGKFPLW---LAPVQVVVATIVS---EADAY 560

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L + G  V  D   E+I  +     L   P+ ++VG++      V ++     
Sbjct: 561 AQTVAETLRRAGLRVEADVRNEKINLKVREHSLAKVPVMLVVGAREAEQGTVAVRRLGGK 620

Query: 425 IREDMSLEEVINYASHR 441
            +E ++L + +      
Sbjct: 621 DQEVLALGDAVARLKDE 637


>gi|217979642|ref|YP_002363789.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|217505018|gb|ACK52427.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 648

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 153/442 (34%), Gaps = 45/442 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  ++E    AE   H+ + R        +   G   W P G      + A +R     
Sbjct: 232 YLRQIEE----AEKRDHRRLGREMDLFHFQEEGPGAIFWHPKGWTLFQTLIAYMRRRMEA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E++ P +    LW  SG + ++ + M      +++     P +      IF++ +K
Sbjct: 288 DGYLEVNTPQVLDRALWETSGHWQTFREHMFLTKTEDERIFALKPMNCPGHVQIFKNGLK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R E      GVMR R F   DA+ F  T +       K+    L
Sbjct: 348 SYRDLPLKIGEFGVVHRYEPSGALHGVMRVRAFTQDDAHIF-CTEDQIMAESLKVNDLIL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   + ++  + P     S E    A+    +V                   D+
Sbjct: 407 SIYQDFGFDDVIIKLSTRPEKRVGSEEAWDKAEAALGRVV------------------DM 448

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           ++             A      E         +    R  + G        +++P    A
Sbjct: 449 LAAGGAKTGVNPGEGAFYGPKLEYTL------RDAIGREWQCGTT---QVDFNMPGRFGA 499

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  AD  K   V +     G++     ++     G   +W   +AP ++ +  I    Q
Sbjct: 500 FYIDADSDKKTPVMIHRAIFGSLERFTGILIEHFSGNLPLW---LAPVQVIVATIT---Q 553

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++ A   K G  V  D   E+I  +     L   P+ ++VG +   +  V I+
Sbjct: 554 DADDYALEVAAAARKYGLRVEADLRNEKISYKIREHSLAKTPVLIVVGKREGLERTVSIR 613

Query: 420 HRLTGIREDMSLEEVINYASHR 441
                    +SLE  +   +  
Sbjct: 614 RLGASDTTSLSLETALERLADE 635


>gi|315225228|ref|ZP_07867045.1| threonine--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314944911|gb|EFS96943.1| threonine--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 646

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 158/439 (35%), Gaps = 40/439 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T   ++  +G+  WLP G    + + A +R+ Q + G  ++  P
Sbjct: 237 AKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG +D YGK+  +        +  +  P +     +I+ SH  SY++LP 
Sbjct: 296 HIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPK 355

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     +  +    L +F  LG
Sbjct: 356 RFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDDEFKHVIDLVLYVFGSLG 414

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                      T+   S +       +      +      I 
Sbjct: 415 FDNFTAQVSLRD-------------PENPTKYIGSDENWAKAENAIINAAKEKGLSYVIE 461

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
               A Y    D   +              R  ++G I      Y+LP      +KGAD 
Sbjct: 462 TGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPERFDLWYKGADN 508

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    A++     G   +W   + P +  ++++    +   +  +
Sbjct: 509 EMHRPVMIHRAPFGSMERFVAILLEHTAGNFPLW---LNPSQAIVLSL---SEKYENYAQ 562

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L         D+  E +G +   A+    P  +IVG     +  V ++ R     
Sbjct: 563 KVLRLLENSDIRTLIDNRAETMGKKIREAETKKIPYMLIVGENEEKEGTVSVRKRGGEDL 622

Query: 427 EDMSLEEVINYASHRFSNN 445
             MS+E      +   + +
Sbjct: 623 GSMSVEAFAKLINDEINKS 641


>gi|330502208|ref|YP_004379077.1| prolyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328916494|gb|AEB57325.1| prolyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 571

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/225 (52%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAIQPAELWQESGRWVQYGPELLRIKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF       + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGL   P++A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YCNVFTRLGLNFRPVQADTGSIGGTGSHEFHVLADSGEDDIAFSD 225



 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G +GK   + MG YGIG  RVVAA IE + D +GI W D++APF I+L+ ++   
Sbjct: 424 NCQVLGENGKPVTLTMGCYGIGVSRVVAAAIEQNFDERGIRWNDALAPFHIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G DV  DD  ++   G +FA  +L+G P +V+V  + +++ K+
Sbjct: 484 EQVREATDKLYAELTAAGFDVLLDDRDKKTSPGIKFADMELIGIPHRVVVSDRGLAEGKL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + L E++++   R  
Sbjct: 544 EYKSRAETEAQAVPLAEILSFLQARIK 570


>gi|170768387|ref|ZP_02902840.1| prolyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170122491|gb|EDS91422.1| prolyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 572

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++++      
Sbjct: 546 YKYRRNGEKQLIKTGDIVDFLLKAIK 571


>gi|323964912|gb|EGB60378.1| prolyl-tRNA synthetase [Escherichia coli M863]
 gi|327255174|gb|EGE66777.1| prolyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 572

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVDYLVKQIK 571


>gi|313891921|ref|ZP_07825522.1| threonine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|329121028|ref|ZP_08249659.1| threonine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|313119564|gb|EFR42755.1| threonine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|327471190|gb|EGF16644.1| threonine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 634

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 160/446 (35%), Gaps = 41/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              +     +   RD      +L L +   H+   G   + P G    + +    RE   
Sbjct: 228 LEHFLFVRSEAEKRDHRKLGKQLDLFS--FHEEGPGFPFFHPKGMVIRNLLIDYERELFR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S +LW++SG +D Y + M      +++     P +       F++  
Sbjct: 286 KYGYEEIVTPIILSKNLWLQSGHWDHYRENMY-FTKIDNEDYAVKPMNCPGGILYFKTQQ 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +  L  R EL     G+ R R F   DA+ F +TP+  +     +   +
Sbjct: 345 RSYRDLPKRVGEFGLVHRHELHGALHGLFRVRNFTQDDAHIF-MTPKDMESEVISVVNMF 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   GLK   +   + P     S E   +A         S                 
Sbjct: 404 KELYDVFGLKY-HIELSTRPENSMGSDELWEIATNALRNAIES----------------- 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D H E              R  + G I     +       T
Sbjct: 446 TNVSYRINEGDGAFYGPKLDFHIEDSLG----------RTWQCGTI-QMDMQLPERFDVT 494

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +   G G++     ++   + G    W    AP ++ +I +    + 
Sbjct: 495 YVGEDGEKHRAVMIHRAGYGSLERFIGILIEHYAGAFPTW---CAPVQVKIIPV---SEN 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++Y ++ + G  V  D   + +G +   A +   P  V+VG K  +   + ++ 
Sbjct: 549 YHNYAQEVYKKMFEQGIRVEIDKGNDTLGYKIRKAQMEKIPYMVVVGEKESNSGNISVRS 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G    + + + I    ++    +
Sbjct: 609 REKGDEGTVDINKFIELILNKMKERK 634


>gi|312864463|ref|ZP_07724694.1| threonine--tRNA ligase [Streptococcus downei F0415]
 gi|311099590|gb|EFQ57803.1| threonine--tRNA ligase [Streptococcus downei F0415]
          Length = 651

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 176/450 (39%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I + + 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTIERYITDREV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S DL+  SG +D Y ++M    D  D +A +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPIASVDLYKTSGHWDHYREDMFPTMDMGDGEAFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + +    
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVEDEFKQTLQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    +     R                  D  +T  +   D M            
Sbjct: 406 IIDVYEDFNITDYSFRLSYR--------------DPADTHKYFDDDEMWEKSQRMLKAAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      + ++  +L  ++ +S   ++    F    ++      
Sbjct: 452 DDMGLD--YYEAEGEAAFYGPKLDIQVKTALGNDETLSTIQLD----FLLPERF----EL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   GI +      A +  ++ G    W   +AP ++++I +   ++
Sbjct: 502 TYIGADGEEHRPVMIHRGIVSTMERFTAYLIETYKGAFPTW---LAPHQVTVIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++
Sbjct: 557 AHADYAWEVAKELRNHGVRVDVDERNEKMQYKIRQSQTHKIPYQLIVGDKEMADKSVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPV 448
              +      SL E ++      +  +RP 
Sbjct: 617 RYGSKQTHTESLNEFVDNIQADIARKSRPA 646


>gi|301629969|ref|XP_002944104.1| PREDICTED: threonyl-tRNA synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 841

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 157/447 (35%), Gaps = 43/447 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I +H+ G   W P G      V   +R   
Sbjct: 229 QQYLHMLEE----AEKRDHRKLGRELDLFHIDEHAPGTVFWHPKGWMLWQEVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y + M  + +   +     P +      IF+  
Sbjct: 285 RDNGYQEVKGPQILDKTLWEKTGHWDKYRENMF-ITESEKRDYALKPMNCPGHILIFKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  F +     R+E      G+MR R F   D + F  T +  +         
Sbjct: 344 IKSYRDLPLRFGEFGNCHRNEPTGGLHGIMRVRGFTQDDGHIF-CTEDMIQSEVATFTTL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             R++   G   I  R  + P     S E    A++   +   +       +P E   + 
Sbjct: 403 LQRVYRDFGFTEILYRLSTRPEKRIGSEESWDRAESALAEGLRASGCTFEYLPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I                               K    R  + G I          + A
Sbjct: 463 PKIEY---------------------------VLKDALGREWQCGTI-QVDPNMPERLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD- 358
            F G DG  H  + +    +G++     ++     G   +W   +AP +++++NI     
Sbjct: 495 EFVGEDGARHRPIVLHRAIVGSLERFIGILIEQFAGALPVW---LAPVQVAVLNITDAQA 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             CR+   K++  L         D   E+I  +     L   P  ++VG K  +   V +
Sbjct: 552 DYCREIAAKLHKALPNQSLRAVTDLRNEKITYKIREHALQKLPYILVVGDKEKAAGAVAV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       MS++  +   +   ++ 
Sbjct: 612 RARGNKDLGVMSIDAFVELIARDIASK 638


>gi|161831126|ref|YP_001597175.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|161762993|gb|ABX78635.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 660

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 161/454 (35%), Gaps = 55/454 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+L+ +          S G   W P G   +  +   IR
Sbjct: 235 KALKAYLYRLEE----AEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIR 290

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +  ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF
Sbjct: 291 QITHKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEPQQY-VIKPMSCPAHVQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP  + +     R+E      G+MR R F+  DA+ F  T +  +   +  
Sbjct: 350 NQGVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIF-CTEDQIQSEVSAF 408

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   +  +  + P     S E    A+    +    K      +P E  
Sbjct: 409 IDQLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGEGA 468

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
            +   I  +                                     +G I+  GT    +
Sbjct: 469 FYGPKIEFSLRDC---------------------------------LGRIWQCGTVQVDF 495

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           S+P  + A +   DG K   V +    +G+      ++     GK  +W   +AP ++ +
Sbjct: 496 SVPERLGAHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVV 552

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI        D   +    L  +G     D   E+IG +     +   P  V++G + V
Sbjct: 553 MNIT---DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREV 609

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +D  + ++         ++LEE         S  
Sbjct: 610 ADKTLSVRALEDEASTTITLEEFARQLKAEISQR 643


>gi|307244344|ref|ZP_07526458.1| threonine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492310|gb|EFM64349.1| threonine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 664

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 160/444 (36%), Gaps = 42/444 (9%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   MI     G   +LP G      +     E       
Sbjct: 255 LFMLEEAKKRDHRKIGKELGLF--MIPDEGPGFPLFLPRGTALKAALMKYWEEVHREAHY 312

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +  LW  SG +  Y + M  +   +++     P +       ++S + SYR
Sbjct: 313 VEIETPIILNRKLWETSGHWFHYKENMYTVQ-IDEEDYAIKPMNCPGAMLFYKSQLHSYR 371

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    +     R EL     G+MR R F   DA+ + L P+  +    ++     +++
Sbjct: 372 DFPMRVGERGRVHRHELSGALHGLMRVRAFTQDDAHIYCL-PDQIRSEVKEVINLIDKVY 430

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            + G     +   + P     + E   +A+ G                 +   +   I  
Sbjct: 431 KQFGFSY-HVELSTRPEDSMGTDEEWAIAEDGLRGALEEMGMEYRVNEGDGAFYGPKIDF 489

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                                        K    R  + G       +      AT+ G 
Sbjct: 490 ---------------------------HLKDCLGRTWQCGTC-QLDMQLPQRFDATYVGK 521

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H  V +    +G++     ++  ++ GK  +W   +AP ++ ++++        D 
Sbjct: 522 DGEKHRPVMLHRVALGSIERFIGILIENYAGKFPVW---LAPCQVKVLSV---SDKYNDF 575

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G  V  D   E++G +   A L   P  ++VG K +    + ++ R  G
Sbjct: 576 AKELQDKLFDAGIRVELDYRAEKVGFKIREAQLEKIPYMLVVGEKEMESCLLSVRSRDEG 635

Query: 425 IREDMSLEEVINYASHRFSNNRPV 448
               MS+E+ +   + + ++   V
Sbjct: 636 ELGQMSVEDFLAKINKQIADRENV 659


>gi|170744367|ref|YP_001773022.1| threonyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|168198641|gb|ACA20588.1| threonyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 670

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 144/437 (32%), Gaps = 43/437 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G+  W P G      + A +R     
Sbjct: 232 YLHRLEE----AERRDHRRLGREMDLFHFQEEGPGVVFWHPKGWTLFQELIAYMRRRLK- 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E++ P +    LW  SG +D Y + M      +++     P +      IF+  +K
Sbjct: 287 ADYREVNAPQILDKALWETSGHWDWYRENMFVTKTEDERVFAIKPMNCPGHVQIFKHGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F  T         K+    L
Sbjct: 347 SYRDLPLRLAEFGAVSRYEPSGALHGLMRVRAFTQDDAHVF-CTEAQLAAECLKINDLIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   G   I ++  + P     S      A+   T+V                   + 
Sbjct: 406 STYADFGFDEIVVKLSTRPEKRVGSDALWDHAEAVMTRVLSE---------------IEE 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
            S   I         A      E +       +    R  + G        ++LP    A
Sbjct: 451 QSGGRIRTAINPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLPERFGA 501

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ADG+     M      G+M   A ++     G   +W   +AP ++ +  I +   
Sbjct: 502 FYVDADGQKKTPVMVHRAICGSMERFAGILIEHFAGHFPLW---LAPLQVVVATITSD-- 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   + A     G     D   E+I  +         P+ ++VG +   +  V I+
Sbjct: 557 -ADPYASDVLAACEAAGLRAEIDLRNEKINYKVREHSHAKVPVMLVVGRREGEERTVSIR 615

Query: 420 HRLTGIREDMSLEEVIN 436
              +     + L++ + 
Sbjct: 616 RLGSQQTRTLPLDQALA 632


>gi|228921082|ref|ZP_04084417.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838628|gb|EEM83934.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 640

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 161/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 232 LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQK 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 290 EYKYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 408 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 498

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ +I +   + V
Sbjct: 499 YIDENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVIPVS--NAV 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++  +L++ G  V  D   E++G +     +   P  +++G K +    V ++ 
Sbjct: 554 HEQYASEVAHKLAQAGIRVEQDARDEKLGYKIREVQMQKVPYVLVIGDKEMEKGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E ++L+  +        N +
Sbjct: 614 YGEEKSEVVALDVFVASIEEEIKNRK 639


>gi|269137906|ref|YP_003294606.1| prolyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267983566|gb|ACY83395.1| prolyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304557958|gb|ADM40622.1| Prolyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 572

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T    + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQASLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YGRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFS 224



 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  GTKY+  +
Sbjct: 366 DGKHYFGINWERDVALPQIADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 NATVQGEDGRNQLMTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G +V  DD  E+ G  FA  +L+G P  V++G + + ++++E
Sbjct: 486 SFRVKEVAERLYDELRAKGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNLDNNEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +S++E+  +   + +
Sbjct: 546 YKYRRSGEKLMISVDEIAAFLQAQIA 571


>gi|164685973|ref|ZP_01946163.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218739|ref|YP_002305526.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|164601497|gb|EAX33218.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013001|gb|ACJ20381.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 660

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 161/454 (35%), Gaps = 55/454 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+L+ +          S G   W P G   +  +   IR
Sbjct: 235 KALKAYLYRLEE----AEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIR 290

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF
Sbjct: 291 HITHKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEPQQY-VIKPMSCPAHVQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP  + +     R+E      G+MR R F+  DA+ F  T +  +   +  
Sbjct: 350 NQGVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIF-CTEDQIQSEVSAF 408

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   +  +  + P     S E    A+    + F  K      +P E  
Sbjct: 409 IDQLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEAFNRKGVEWDILPGEGA 468

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
            +   I  +                                     +G I+  GT    +
Sbjct: 469 FYGPKIEFSLRDC---------------------------------LGRIWQCGTVQVDF 495

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           S+P  + A +   DG K   V +    +G+      ++     GK  +W   +AP ++ +
Sbjct: 496 SVPERLGAHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVV 552

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI        D   +    L  +G     D   E+IG +     +   P  V++G + V
Sbjct: 553 MNIT---DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREV 609

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +D  + ++         ++LEE         S  
Sbjct: 610 ADKTLSVRALEDEASTTITLEEFARQLKAEISQR 643


>gi|237704354|ref|ZP_04534835.1| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|26106541|gb|AAN78727.1|AE016755_227 Prolyl-tRNA synthetase [Escherichia coli CFT073]
 gi|91070839|gb|ABE05720.1| prolyl-tRNA synthetase [Escherichia coli UTI89]
 gi|226902266|gb|EEH88525.1| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
          Length = 590

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 249



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 384 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 443

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 444 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 503

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 504 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 563

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 564 YKYRRNGEKQLIKTGDIVDYLVKQIK 589


>gi|256422752|ref|YP_003123405.1| threonyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256037660|gb|ACU61204.1| threonyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 646

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 93/452 (20%), Positives = 172/452 (38%), Gaps = 49/452 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E   RD      +L L T    +   G+  WLP G    + + + +++ Q  +G
Sbjct: 231 YLHLVEEAKKRDHRKLGKELELFT-FSEKVGLGLPLWLPKGAMLRERLQSFLQKAQIESG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            + +  P + + +L++ SG Y+ YGK+  +        +  +  P +     +I++S  K
Sbjct: 290 YMPVVTPHIGNKNLYITSGHYEKYGKDSFQPIHTPEEGEEFMLKPMNCPHHCEIYKSSPK 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+    L
Sbjct: 350 SYKDLPVRFAEFGTVYRYEQHGELHGLTRVRGFTQDDAHLF-CRPDQVKEEFCKVIDLVL 408

Query: 183 RIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +F  L       +              S E   LA+    +    K         E   
Sbjct: 409 YVFQSLNFTDYTAQISLRDQEDRAKYIGSDENWNLAEQAIIESAAEKGLKTVVEYGEAAF 468

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               K    R  ++G I      Y+LP 
Sbjct: 469 YGPKLDF---------------------------MVKDALGRKWQLGTI---QVDYNLPE 498

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + GAD + H  V +     G++    AV+     GK  +W   + P ++ ++ I 
Sbjct: 499 RFELEYVGADNQKHRPVMIHRAPFGSLERFIAVLIEHCGGKFPLW---LTPTQVKILPIS 555

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +Q   +  EK+   L  V      DD  E+IG +    +L   P  +++G K  ++SK
Sbjct: 556 DKNQ---EYAEKVAELLKNVEIRAEIDDRSEKIGKKIRETELAKIPYMLVIGEKEAAESK 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           V ++ +  G    M +++ I        + +P
Sbjct: 613 VAVRRQAKGDLGAMDIDQFIALVKEEVVSRKP 644


>gi|238893191|ref|YP_002917925.1| prolyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545507|dbj|BAH61858.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 572

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y  LS  G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SYRVQELAEKLYTELSAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y      
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKAIK 571


>gi|152984493|ref|YP_001349901.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166980141|sp|A6VA16|SYP_PSEA7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150959651|gb|ABR81676.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 571

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L  E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLNQESLQATYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSKIFTRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSD 225



 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           +      +  +   P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 EDKHYFGVNWERDLPLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +     GK   + MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   
Sbjct: 424 KLSVLSEQGKPVNLIMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R A +++YA L+  G +V  DD  ++   G +FA  +LLG P +++V  + +++  +
Sbjct: 484 ESVRQATDRLYAELTAAGFEVLLDDRDKKTSPGVKFADMELLGIPHRIVVSDRGLNEGVL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     +++ + E++++ + + S
Sbjct: 544 EYKGRRDSESQNLPIGELMSFITEKLS 570


>gi|300814791|ref|ZP_07095034.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511099|gb|EFK38356.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 636

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 160/445 (35%), Gaps = 48/445 (10%)

Query: 13  ENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   +AE   H+ + R      +H+   G   + P G    +N+ +  +      G  E+
Sbjct: 232 EKREEAEKRDHRKLGRELDLFSMHEEGPGFPFFHPNGMIIRNNLLSWWKNVLQERGYGEI 291

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + + DLW  SG +D Y + M    + +++     P +    T I+ +   SYR+LP
Sbjct: 292 LTPVILNEDLWHRSGHWDHYKENMY-FTEIDEEGYAVKPMNCPGSTLIYSTTPHSYRDLP 350

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             + +  L  R EL     G+ R R F   DA+ + L P   K    ++      ++   
Sbjct: 351 LRYAEFGLVHRHELSGALHGLFRVRSFTQDDAHIYCL-PNQIKSEVFEIIDLANLLYDTF 409

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G K   +   + P       E    A+    +    K                     +I
Sbjct: 410 GFKY-SVELSTRPDDYMGDLESWNEAEKALKEALEEKGMP-----------------YTI 451

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGA 305
            E   A Y    D H E              R  + G I   F     +      T+   
Sbjct: 452 NEGDGAFYGPKIDYHLEDAIG----------RTWQCGTIQLDFQLPQNF----ELTYVAE 497

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG K   V +     G++     ++     GK  +W   ++P ++ +I +    +  +  
Sbjct: 498 DGSKKRPVMLHRALFGSVERFMGILIEHFAGKFPLW---LSPVQVEIIPV---SEKFKPY 551

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++ +L K G  V  D+  E++G +   A L      +++G K  +  K+ ++ R   
Sbjct: 552 AGEVFDQLKKAGIRVKIDERAEKVGYKIREAQLKKVNYMLVIGEKETASHKLSVRKRSGE 611

Query: 425 IREDMSLEEVINYASHRFSNNRPVL 449
             +D+ + + I            VL
Sbjct: 612 EVKDVEVSKFIEDLKEEIKTKAIVL 636


>gi|329996732|ref|ZP_08302530.1| proline--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|328539331|gb|EGF65355.1| proline--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 572

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA LS  G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SYRVQELAEKLYAELSAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y      
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKAIK 571


>gi|152968789|ref|YP_001333898.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|166980131|sp|A6T4Z7|SYP_KLEP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150953638|gb|ABR75668.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 572

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA LS  G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SYRVQELAEKLYAELSAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y      
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKAIK 571


>gi|152976959|ref|YP_001376476.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025711|gb|ABS23481.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 643

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 173/435 (39%), Gaps = 34/435 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 235 MRMLEEAKERDHRKLGKELKLFTNN-QKVGQGLPLWLPKGATIRRIIERYIVDKEVSLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M      +++ ++  P +      ++++ I SYR
Sbjct: 294 NHVYTPVLGSRELYETSGHWNHYRDGMFPSMQMDNEELVLRPMNCPHHMMVYKNDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEELKRVVNLTLEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL++   R                  D  +T+ + + D M         +  D +  
Sbjct: 413 KDFGLENYSFRLSYR--------------DPEDTKKYYADDEMWEKAQGMLKEAMDEMG- 457

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 458 -LEYYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +    QV  D 
Sbjct: 509 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--QVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++     
Sbjct: 564 AKKVQEELQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENGVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYAS 439
             E ++L+  ++   
Sbjct: 624 KSETIALDAFVDMIK 638


>gi|319404307|emb|CBI77900.1| Threonyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 654

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 155/449 (34%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        + S G+  W P G K   N+ + +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEESPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKA-MIYGPTHEEVMTD 116
           +     E+  P +    LW  SG +  Y + M +      D ND+      P +      
Sbjct: 289 DNHKYAEVQAPQVLDKSLWEISGHWGWYKENMFKTIPAADDWNDEYTYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPVRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIF-CTEEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G K I ++  + P     S E    A+   T V  +           
Sbjct: 408 SINDLILSTYADFGFKEISLKLSTRPEKRVGSDELWDHAENIMTSVLKT----------- 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +  S   +         A      E              R  + G        ++
Sbjct: 457 ----IEEKSSGCVKISILPGEGAFYGPKFEYTL------TDAIGREWQCGTT---QVDFN 503

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +     G+M     ++  +  G    W   +AP +I + 
Sbjct: 504 LPERFGAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHIPFW---LAPQQIVVA 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  +KI  +L  +G     D   E+I  +     L   P+ ++ G +   
Sbjct: 561 TITSD---ANEYAKKITEKLKALGLSAKLDSRNEKINYKIREHSLQKVPVILVCGKQEAQ 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  + +E+V       
Sbjct: 618 TNSVNMRRLGSIEQTFLPIEKVFAQLLDE 646


>gi|256819829|ref|YP_003141108.1| threonyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581412|gb|ACU92547.1| threonyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 647

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 158/439 (35%), Gaps = 40/439 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T   ++  +G+  WLP G    + + A +R+ Q + G  ++  P
Sbjct: 237 AKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG +D YGK+  +        +  +  P +     +I+ SH  SY++LP 
Sbjct: 296 HIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPK 355

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     +  +    L +F  LG
Sbjct: 356 RFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDDEFKHVIDLVLYVFGSLG 414

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                      T+   S +       +      +      I 
Sbjct: 415 FDNFTAQVSLRD-------------PENPTKYIGSDENWAKAENAIINAAKEKGLSYVIE 461

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
               A Y    D   +              R  ++G I      Y+LP      +KGAD 
Sbjct: 462 TGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPERFDLWYKGADN 508

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    A++     G   +W   + P +  ++++    +   +  +
Sbjct: 509 EMHRPVMIHRAPFGSMERFVAILLEHTAGNFPLW---LNPSQAIVLSL---SEKYENYAQ 562

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L         D+  E +G +   A+    P  +IVG     +  V ++ R     
Sbjct: 563 KVLRLLENSDIRTLIDNRAETMGKKIREAETQKIPYMLIVGENEEKEGTVSVRKRGGEDL 622

Query: 427 EDMSLEEVINYASHRFSNN 445
             MS+E      +   + +
Sbjct: 623 GSMSVEAFAKLINDEVAKS 641


>gi|218547650|ref|YP_002381441.1| prolyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226701288|sp|B7LW79|SYP_ESCF3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218355191|emb|CAQ87798.1| prolyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|323975637|gb|EGB70733.1| prolyl-tRNA synthetase [Escherichia coli TW10509]
          Length = 572

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVDYLVKQIK 571


>gi|288937023|ref|YP_003441082.1| prolyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|288891732|gb|ADC60050.1| prolyl-tRNA synthetase [Klebsiella variicola At-22]
          Length = 572

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A  +G DG++  + MG YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H 
Sbjct: 426 NAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SYRVQELAEKLYAELRAHGIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y      
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKAIK 571


>gi|227821825|ref|YP_002825795.1| threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|254783532|sp|C3MB49|SYT_RHISN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227340824|gb|ACP25042.1| ThrS; threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 661

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 155/447 (34%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +   ++ A +R     
Sbjct: 234 YLHVL----AEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRVFQSLVAYMRRRLEV 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 290 -DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPVRMAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G K I ++  + P     S      A+   T V  +             
Sbjct: 408 NDLILSVYEDFGFKEIVVKLSTRPDKRVGSDALWDRAEAVMTDVLNT------------- 454

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E         K    R  + G        ++LP
Sbjct: 455 --IEAQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNLP 503

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +   D  K   V +     G+M     ++  ++ G   +W   ++P ++ +  I
Sbjct: 504 ERFGAFYIDKDSEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW---ISPLQVVVATI 560

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++ ARL + G  V  D   E+I  +     +   P+ V+ G +   + 
Sbjct: 561 TSD---ADDYGREVAARLREAGLTVETDFRNEKINYKIREHSVTKVPVIVVCGKREAEER 617

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V I+   +  +  MSLEE +   S  
Sbjct: 618 SVNIRRLGSQAQTAMSLEEAVAALSSE 644


>gi|259047194|ref|ZP_05737595.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036244|gb|EEW37499.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 647

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 173/451 (38%), Gaps = 39/451 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K FL + +E   RD      +L L   MI  +   G+  WLP G      +   I +++ 
Sbjct: 227 KEFLKMREEAKERDHRKLGKELDLF--MISQEVGSGLPFWLPKGATIRRTIERYIVDKEI 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSH 121
             G   +  P +    L+  SG +  Y ++M    D  D  + +  P +      ++++H
Sbjct: 285 SLGYQHVYTPVMADVGLYKTSGHWAHYQEDMFPPMDMGDGELLVLRPMNCPHHMMVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + ++   
Sbjct: 345 IHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRILDL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++    +K    R                  D  +   +   D M     +   +  
Sbjct: 404 IREVYSDFNVKDYRFRLSYR--------------DPEDKHKYFDDDEMWNKAETMLKEAM 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D +       +     A      + +   ++   + +S   ++    F    ++      
Sbjct: 450 DEMG--LEYFEAIGEAAFYGPKLDIQFRTAMGLEETMSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T+ G DG +    V +    +       A +   + G    W   +AP + ++I +    
Sbjct: 500 TYVGEDGDNTHRPVVIHRGVVSTAERFVAYLIEEYKGAFPTW---LAPVQATIIPVSV-- 554

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   DA  ++  +++++G  V  DD  E++G +   +     P Q+++G K V +  V +
Sbjct: 555 EHHYDAARELKEKMARLGMRVELDDRNEKMGYKIRASQTQKIPYQLVIGDKEVEEGTVTV 614

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN-NRPV 448
           +   +   + MS+E  + Y     +N +RP+
Sbjct: 615 RRYGSKETKSMSIEAYLEYVQREIANFSRPL 645


>gi|187931727|ref|YP_001891712.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691566|sp|B2SGS3|SYT_FRATM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187712636|gb|ACD30933.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 634

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 156/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +     +P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELLPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+    V +    +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|306815206|ref|ZP_07449355.1| prolyl-tRNA synthetase [Escherichia coli NC101]
 gi|305850868|gb|EFM51323.1| prolyl-tRNA synthetase [Escherichia coli NC101]
          Length = 572

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  +   +  RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGSLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVDYLVKQIK 571


>gi|110640415|ref|YP_668143.1| prolyl-tRNA synthetase [Escherichia coli 536]
 gi|117622479|ref|YP_851392.1| prolyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|161486316|ref|NP_752183.2| prolyl-tRNA synthetase [Escherichia coli CFT073]
 gi|162138494|ref|YP_539251.2| prolyl-tRNA synthetase [Escherichia coli UTI89]
 gi|170680577|ref|YP_001742323.1| prolyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|191171415|ref|ZP_03032964.1| prolyl-tRNA synthetase [Escherichia coli F11]
 gi|215485356|ref|YP_002327787.1| prolyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218557136|ref|YP_002390049.1| prolyl-tRNA synthetase [Escherichia coli S88]
 gi|218688070|ref|YP_002396282.1| prolyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227884892|ref|ZP_04002697.1| proline--tRNA ligase [Escherichia coli 83972]
 gi|300977725|ref|ZP_07174019.1| prolyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300990442|ref|ZP_07179210.1| prolyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|301046653|ref|ZP_07193784.1| prolyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|331661266|ref|ZP_08362198.1| proline--tRNA ligase [Escherichia coli TA206]
 gi|331681580|ref|ZP_08382217.1| proline--tRNA ligase [Escherichia coli H299]
 gi|114152192|sp|Q8FKZ4|SYP_ECOL6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152193|sp|Q1RFZ4|SYP_ECOUT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123148404|sp|Q0TLD7|SYP_ECOL5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112309|sp|A1A7N8|SYP_ECOK1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699141|sp|B7MBH6|SYP_ECO45 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701285|sp|B1LGZ7|SYP_ECOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782899|sp|B7UJ96|SYP_ECO27 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782901|sp|B7MP55|SYP_ECO81 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110342007|gb|ABG68244.1| prolyl-tRNA synthetase [Escherichia coli 536]
 gi|115511603|gb|ABI99677.1| prolyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|170518295|gb|ACB16473.1| prolyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|190908349|gb|EDV67939.1| prolyl-tRNA synthetase [Escherichia coli F11]
 gi|215263428|emb|CAS07748.1| prolyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218363905|emb|CAR01570.1| prolyl-tRNA synthetase [Escherichia coli S88]
 gi|218425634|emb|CAR06420.1| prolyl-tRNA synthetase [Escherichia coli ED1a]
 gi|222032025|emb|CAP74764.1| Prolyl-tRNA synthetase [Escherichia coli LF82]
 gi|227838141|gb|EEJ48607.1| proline--tRNA ligase [Escherichia coli 83972]
 gi|294489624|gb|ADE88380.1| prolyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|300301388|gb|EFJ57773.1| prolyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300305742|gb|EFJ60262.1| prolyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300409810|gb|EFJ93348.1| prolyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|307552047|gb|ADN44822.1| prolyl-tRNA synthetase [Escherichia coli ABU 83972]
 gi|307629771|gb|ADN74075.1| prolyl-tRNA synthetase [Escherichia coli UM146]
 gi|312944803|gb|ADR25630.1| prolyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285273|gb|EFU44718.1| prolyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315295532|gb|EFU54858.1| prolyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315300667|gb|EFU59894.1| prolyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|323950806|gb|EGB46683.1| prolyl-tRNA synthetase [Escherichia coli H252]
 gi|323955077|gb|EGB50853.1| prolyl-tRNA synthetase [Escherichia coli H263]
 gi|324008226|gb|EGB77445.1| prolyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|324014120|gb|EGB83339.1| prolyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|324112394|gb|EGC06371.1| prolyl-tRNA synthetase [Escherichia fergusonii B253]
 gi|325496126|gb|EGC93985.1| prolyl-tRNA synthetase [Escherichia fergusonii ECD227]
 gi|331052308|gb|EGI24347.1| proline--tRNA ligase [Escherichia coli TA206]
 gi|331081801|gb|EGI52962.1| proline--tRNA ligase [Escherichia coli H299]
          Length = 572

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVDYLVKQIK 571


>gi|206579512|ref|YP_002240318.1| prolyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|226701300|sp|B5Y1H7|SYP_KLEP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206568570|gb|ACI10346.1| prolyl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 572

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A  +G DG++  + MG YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H 
Sbjct: 426 NAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SYRVQELAEKLYAELRAHGIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y      
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKAIK 571


>gi|73919786|sp|Q83C10|SYT_COXBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 651

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 160/454 (35%), Gaps = 55/454 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+L+ +          S G   W P G   +  +   IR
Sbjct: 226 KALKAYLYRLEE----AEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF
Sbjct: 282 HITHKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEPQQY-VIKPMSCPAHVQIF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP  + +     R+E      G+MR R F+  DA+ F  T +  +   +  
Sbjct: 341 NQGVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIF-CTEDQIQSEVSAF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   +  +  + P     S E    A+    +    K      +P E  
Sbjct: 400 IDQLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
            +   I  +                                     +G I+  GT    +
Sbjct: 460 FYGPKIEFSLRDC---------------------------------LGRIWQCGTVQVDF 486

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           S+P  + A +   DG K   V +    +G+      ++     GK  +W   +AP ++ +
Sbjct: 487 SVPERLGAHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVV 543

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI        D   +    L  +G     D   E+IG +     +   P  V++G + V
Sbjct: 544 MNIT---DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREV 600

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +D  + ++         ++LEE         S  
Sbjct: 601 ADKTLSVRALEDEASTTITLEEFARQLKAEISQR 634


>gi|257139340|ref|ZP_05587602.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 593

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 142/405 (35%), Gaps = 39/405 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G+  W P G      V   +R   +  G
Sbjct: 226 YLHMLEEAEKRDHRKLGKQLDLF--HIQEEAPGMVFWHPKGWTLWQRVEQYMRRRLDAAG 283

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      +F+  ++SY
Sbjct: 284 YLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEK-RDYAIKPMNCPGHVQVFKHGLRSY 342

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F  T +             + +
Sbjct: 343 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIF-CTEDQINSEAIAFNKLAMSV 401

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E   +   I 
Sbjct: 402 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGEGAFYGPKIE 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                 + D+L  + +     +++      G +Y          
Sbjct: 462 Y--------------------HIKDALGRSWQCGTLQLDMMLPERLGAEY-------VAE 494

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G+M     ++   H G    W   +APF   ++NI    +   + 
Sbjct: 495 DNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAW---LAPFHAVVLNIA---ESQAEY 548

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + +   L K G  V  D   E+I  +     L   P  +++G K
Sbjct: 549 AQTVVQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVLGDK 593


>gi|56707928|ref|YP_169824.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670399|ref|YP_666956.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457008|ref|ZP_03665481.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370416|ref|ZP_04986421.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874733|ref|ZP_05247443.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|73919791|sp|Q5NGL8|SYT_FRATT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123063497|sp|Q14I20|SYT_FRAT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56604420|emb|CAG45450.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320732|emb|CAL08833.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568659|gb|EDN34313.1| hypothetical protein FTBG_00181 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840732|gb|EET19168.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159111|gb|ADA78502.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 634

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 156/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +     +P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELLPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+    V +    +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|262276749|ref|ZP_06054542.1| threonyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262223852|gb|EEY74311.1| threonyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 637

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 161/451 (35%), Gaps = 46/451 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD       L L      + S G   W   G     ++   +R++Q 
Sbjct: 229 LDEYLHRIEEAEKRDHRKLGKALDLF--HFQEESPGAVFWHQKGWSLFQSLVKFMRDKQT 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G +E++ P +    LW +SG ++ + + M    D ++K     P +      +F   +
Sbjct: 287 DAGYLEVNTPEMLDKTLWEKSGHWEKFQEHMYT-TDADEKTFAIKPMNCPGHIQVFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSY++LP    +     R E      G+MR R F   DA+ F  T E       K+    
Sbjct: 346 KSYKDLPLKISEFGKVHRYEPSGALHGLMRVRAFTQDDAHIF-CTEEQITEESLKVTNLI 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I+   G K++ ++    P       +    ++        +          E   +  
Sbjct: 405 LDIYKSFGFKNVKLKFSDRPEKRVGDDKIWNKSEKALLDAIKTSGLKYEINKGEGAFYGP 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I    I                               R  + G        ++LP  + 
Sbjct: 465 KIEFVLIDA---------------------------IGRDWQCGT---LQVDFNLPGRLG 494

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++   DG K   V +     G++     ++   H GK   W   ++P +++++ I    
Sbjct: 495 ASYVANDGSKKIPVMLHRAMFGSLERFIGILIEHHTGKFPFW---LSPEQVAVLPISNK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L K G     DD  E+I  +     +   P+ +I G+K V ++ + I
Sbjct: 551 --QNDYASKVKLLLEKKGLRSIIDDRNEKINYKIREHSVSKIPVLMICGAKEVQNNTITI 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +      ++ +SLEE +   S    +N P +
Sbjct: 609 RRLGQTNQQTVSLEEAVTNLS--LESNTPSI 637


>gi|229543582|ref|ZP_04432642.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328002|gb|EEN93677.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 640

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 167/439 (38%), Gaps = 34/439 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L L T    +  +G+  WLP G      +   I +++ + G 
Sbjct: 232 LKFLEEAKERDHRKIGKELELFTN-SQKVGQGLPLWLPKGATIRRTIERYIVDKEVKLGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S DL+  SG +D Y ++M  +   +++ ++  P +      ++++ I SYR
Sbjct: 291 DHVYTPVLGSVDLYKTSGHWDHYQEDMFPVMKMDNEELVLRPMNCPHHMMVYKNTIHSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ L  R E+     G+ R R   + DA+ F + P+  K  + ++    L ++
Sbjct: 351 ELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEEFKRVVELILEVY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                  D   T  +   D M     +   +  D    
Sbjct: 410 KDFNITDYSFRLSYR--------------DPENTDKYYDDDEMWNKAQAMLKETMDDFGF 455

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 456 D--YYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----DLTYVGE 505

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +        D 
Sbjct: 506 DGKPHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPIQVQVIPVSP--DAHYDY 560

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L   G     D   E++G +   A +   P  +IVG +  +D+ V ++     
Sbjct: 561 ARKVQEALKAEGVRAELDARDEKLGYRIREAQVQKIPYALIVGDQEATDNAVNVRKYGEK 620

Query: 425 IREDMSLEEVINYASHRFS 443
             E + ++  ++       
Sbjct: 621 QTETVPVDTFLSKIKEEIK 639


>gi|300938604|ref|ZP_07153336.1| prolyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|331645338|ref|ZP_08346449.1| proline--tRNA ligase [Escherichia coli M605]
 gi|281177420|dbj|BAI53750.1| prolyl-tRNA synthetase [Escherichia coli SE15]
 gi|300456450|gb|EFK19943.1| prolyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|330910045|gb|EGH38555.1| prolyl-tRNA synthetase [Escherichia coli AA86]
 gi|331046095|gb|EGI18214.1| proline--tRNA ligase [Escherichia coli M605]
          Length = 572

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVDYLVKQIK 571


>gi|218698853|ref|YP_002406482.1| prolyl-tRNA synthetase [Escherichia coli IAI39]
 gi|226701079|sp|B7NKX8|SYP_ECO7I RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218368839|emb|CAR16587.1| prolyl-tRNA synthetase [Escherichia coli IAI39]
          Length = 572

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLQIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVDYLVKQIK 571


>gi|146283154|ref|YP_001173307.1| prolyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166980144|sp|A4VNB4|SYP_PSEU5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145571359|gb|ABP80465.1| prolyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 571

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+W+P+G +AL    AI+REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWMPMGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNKAGALEVLMPAIQPAELWQESGRWEQYGPELLRLKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF L  E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLNQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCNIFTRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAFSDSSDYAA 231



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 120/206 (58%), Gaps = 4/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYLGLNWERDLPLPQVADLRNVVAGDPSPDGKGSLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G +GK   + MG YGIG  RVVAA IE ++D +GI+WPD++APF+I+L+ +K   
Sbjct: 424 NCQVMGENGKPATLIMGCYGIGVSRVVAAAIEQNYDERGILWPDALAPFQIALVPMKYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 EAVREATDKLYAELTAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSDRGLADGML 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
           E KHR     + +++ +++++ + R 
Sbjct: 544 EYKHRRDAQPQQVAVSDILSFINSRV 569


>gi|159899369|ref|YP_001545616.1| threonyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892408|gb|ABX05488.1| threonyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 604

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 162/460 (35%), Gaps = 54/460 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y     +   RD      +L L T    +   G+  WLP G    D +   +R+ Q 
Sbjct: 183 LDHYLWQQEEAKKRDHRKLGRELGLFT-FSQKVGAGLALWLPKGAILRDVLERFLRQAQI 241

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR---------NDKAMIYGPTHEEV 113
             G + +  P +   DL+  SG + +Y   +                 +  +  P +   
Sbjct: 242 ERGYLPVVTPHMGKIDLYKTSGHWYTYRDGIFPPMREIENDDTENPEGEIYLLKPMNCPH 301

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
             +I+ S  +SYR+LP    +    +R E      G++R R F + D++ F +TP+  + 
Sbjct: 302 HIEIYASEPRSYRDLPLRLAEFGTVYRYEHSGELTGLLRVRSFTVDDSHLF-VTPDQLEA 360

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMD 229
            + K+    L +F  +GLK    R     +G      S E    A          K    
Sbjct: 361 EFLKVVDLILFVFGTMGLKDFQARVGLREVGNPKYIGSDEVWEKAQNAIINAAEKKGLNY 420

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             +  E   +   +                               + V  R  ++G +  
Sbjct: 421 IVVEGEAAFYGPKLDF---------------------------IFRDVLGRQWQLGTV-- 451

Query: 290 FGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      + G DG+ H  + +     G++      +   + G   +W   +AP
Sbjct: 452 -QVDYNLPERFEIEYTGEDGQKHRPIMIHRAPFGSIERFVGTLIEQYAGAFPVW---LAP 507

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++L+ I           E + A+L+  G  V  D    ++ ++   A  L  P  ++V
Sbjct: 508 VQVTLVPIT---DRHVAYAESVAAKLNAQGLRVEVDASNNRMNAKIRDAQKLKIPYMLVV 564

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G K      V ++ R  G    +S++E I       +N +
Sbjct: 565 GDKEEEAGAVAVRQRSGGDLGSISVDEFIARIKDEVANYQ 604


>gi|283783983|ref|YP_003363848.1| prolyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282947437|emb|CBG86984.1| prolyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 572

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL+   ++A++G IGG  SHEF VLA +GE  +  S       
Sbjct: 181 YSKIFTRIGLEFRAVQADTGSIGGSASHEFQVLAQSGEDDIIFSDTSDYAA 231



 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 113/203 (55%), Gaps = 3/203 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPIVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SYRVQELAEKLYAELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
            K+R  G ++ +   +++++  +
Sbjct: 546 YKYRRNGEKQLIKTGDIVSFLVN 568


>gi|149001905|ref|ZP_01826859.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759714|gb|EDK66704.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 435

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 175/446 (39%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 17  KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 74

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 75  ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 135 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 193

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 194 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 240 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 289

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 290 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 344

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 345 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVR 404

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + +S++  +       +N 
Sbjct: 405 RYGQKETQTVSVDNFVQAILADIANK 430


>gi|311069390|ref|YP_003974313.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869907|gb|ADP33382.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 643

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 162/431 (37%), Gaps = 33/431 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +  +G+  WLP G      +   I +++   G   +  P
Sbjct: 241 AKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELSLGYEHVYTP 299

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L S +L+  SG ++ Y   M    + +++ +   P +      I+++ I SYR LP   
Sbjct: 300 VLGSKELYETSGHWNHYQDGMFPPIELDNETLALRPMNCPHHMMIYKNDIHSYRELPIRI 359

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R E+     G+ R R   + DA+ F + P+  K  + +       ++   GL 
Sbjct: 360 AELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFIRTVRLIQDVYEDFGLN 418

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               R                  D  +T+ +   D M     S   D  D I  +    +
Sbjct: 419 DYTFRLSYR--------------DPEDTEKYFDDDEMWNKAQSMLKDAMDEIGSD--YYE 462

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      + ++  ++ + + +S   ++    F    ++      T+ G DGK H 
Sbjct: 463 AEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPERF----DLTYVGEDGKQHR 514

Query: 312 VQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             +   G+ + M    A +   H G    W   +AP +  +I +     V  D  +K+  
Sbjct: 515 PVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--SVHLDYAKKVQE 569

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++       E +S
Sbjct: 570 RLQREGLRVEVDIRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQKSETIS 629

Query: 431 LEEVINYASHR 441
           L++ +  A   
Sbjct: 630 LDDFVKKAVAE 640


>gi|213423623|ref|ZP_03356603.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 322

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/225 (54%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S 
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD 225


>gi|163782015|ref|ZP_02177014.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882547|gb|EDP76052.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 641

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 157/435 (36%), Gaps = 41/435 (9%)

Query: 17  DAEIASHKLMLRT---GMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +A+   H+ + R     MI +    G+  WLP G      +    +EE  + G   +  P
Sbjct: 241 EAKKRDHRKLGRDLEFFMIDENVGAGLVLWLPRGSIYRKVLEDYWKEEHIKRGYQFVYTP 300

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +  + LW  SG  + Y   M    +   +     P +      I++S ++SY++LP   
Sbjct: 301 HVGKSKLWEISGHLECYKPNMFPAMEMEGEEYYVKPMNCPFHIAIYKSKVRSYKDLPVKL 360

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++   +R E+     G++R R F   DA+    TPE             L +    G  
Sbjct: 361 AELGTVYRYEMSGVLHGLLRVRGFTQDDAHII-CTPEQVDEVIRDTLDLALSMLKDFGFD 419

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E   +++    +      +                        
Sbjct: 420 DFKIYVSTRPEDAIGSDEQWEVSENALKKAVEDLGYTYEIDEGGG--------------- 464

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                A      + K+ D++    + S    +    F    ++      T+ G D K H 
Sbjct: 465 -----AFYGPKIDVKIRDAIGRLWQCSTIQFD----FNLPERF----DMTYVGPDNKKHR 511

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +    +G++     ++   + G   +W   ++P +  ++ I        +   K+ +
Sbjct: 512 PYMIHRAFLGSIERFTGILLEHYAGLLPVW---LSPTQARIVPIA---DRHLEYGRKVLS 565

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G  V  D+  E++ ++   A+L+  P  ++VG + V    V ++ +  G    MS
Sbjct: 566 RLQEEGFRVDMDERDERMNAKIREAELMKIPYVLVVGDREVEAGTVSVRSKKEGNLGSMS 625

Query: 431 LEEVINYASHRFSNN 445
           LEE I +   +    
Sbjct: 626 LEEFIEHLREKVERK 640


>gi|251795037|ref|YP_003009768.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247542663|gb|ACS99681.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 637

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 153/443 (34%), Gaps = 41/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M  + + G+  +LP G      +    RE  NR  
Sbjct: 234 YLYQLEEAKKRDHRKLGKELELF--MFSEEAPGMPFYLPKGMAIRTALENFSRELLNRND 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  +W +SG ++ Y   M      ++      P +      IF++ ++SY
Sbjct: 292 YEEVRTPFMMNKRMWEQSGHWEHYKDNMY-FTKVDESEFALKPMNCPGHMLIFKNSLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R EL    G +MR R F   DA+ F + P+  +    K+      +
Sbjct: 351 RELPVRLAEFGQVHRHELSGALGGMMRVRTFCQDDAHLF-VRPDQIEEEIGKVMSLIGEV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +  +   + P     S E    A+     V  ++         +   +   I 
Sbjct: 410 YKVFGF-AYTVELSTRPADYMGSDELWDEAEQSLKNVLDAQGVNYRINEGDGAFYGPKID 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            + +                               R  + G I     +       ++ G
Sbjct: 469 FHIVDA---------------------------LKRSWQCGTI-QLDFQMPEKFDLSYIG 500

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D K    V +     G++     ++   + G   IW   +AP +  +I +  H+    D
Sbjct: 501 EDNKKQRPVVIHRAIYGSLDRFLGILIEHYSGAFPIW---LAPVQAKVIPVSEHE---LD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ ++L + G  V  D   E++G++   + L   P  ++VG        V ++ R  
Sbjct: 555 YALQVKSQLIQAGIRVEVDARSEKLGNKIRKSQLEKVPYMLVVGKNERLSGSVSVRKRGE 614

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                  LEE+       F   R
Sbjct: 615 AEGSVQQLEEIAGAIVEEFRKRR 637


>gi|75764566|ref|ZP_00744025.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487945|gb|EAO51702.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 445

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 162/445 (36%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q 
Sbjct: 37  LEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 94

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ +
Sbjct: 95  EYNYQEVRTPFMMNQEVWERSGHWGHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKL 153

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +     R E      G++R R F   DA+ F +TP+  +     +    
Sbjct: 154 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPKQIEDEIKSVMAQI 212

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       +    A+     V  S ++       +      
Sbjct: 213 DYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDG----- 266

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 267 ---------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DLN 303

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  K   V +    +G++    A++     G    W   VAP ++ ++ +   + V
Sbjct: 304 YIDENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAW---VAPVQVKVVPVS--NAV 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++ 
Sbjct: 359 HEQYCSEVAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYFLVIGDKEMESGAVNVRK 418

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 E ++L+  +        N 
Sbjct: 419 YGEEKSEVVALDVFVARIEEEIKNR 443


>gi|215919162|ref|NP_820316.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|206584046|gb|AAO90830.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
          Length = 660

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 160/454 (35%), Gaps = 55/454 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+L+ +          S G   W P G   +  +   IR
Sbjct: 235 KALKAYLYRLEE----AEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIR 290

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF
Sbjct: 291 HITHKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEPQQY-VIKPMSCPAHVQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP  + +     R+E      G+MR R F+  DA+ F  T +  +   +  
Sbjct: 350 NQGVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIF-CTEDQIQSEVSAF 408

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   +  +  + P     S E    A+    +    K      +P E  
Sbjct: 409 IDQLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGEGA 468

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
            +   I  +                                     +G I+  GT    +
Sbjct: 469 FYGPKIEFSLRDC---------------------------------LGRIWQCGTVQVDF 495

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           S+P  + A +   DG K   V +    +G+      ++     GK  +W   +AP ++ +
Sbjct: 496 SVPERLGAHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVV 552

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI        D   +    L  +G     D   E+IG +     +   P  V++G + V
Sbjct: 553 MNIT---DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREV 609

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +D  + ++         ++LEE         S  
Sbjct: 610 ADKTLSVRALEDEASTTITLEEFARQLKAEISQR 643


>gi|283835256|ref|ZP_06354997.1| proline--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291068967|gb|EFE07076.1| proline--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 572

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDDRGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SYRVQELAEKLYAELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y      
Sbjct: 546 YKYRRNGEKQLIKTGDIVDYLVKAIK 571


>gi|254503680|ref|ZP_05115831.1| threonyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439751|gb|EEE46430.1| threonyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 703

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 155/452 (34%), Gaps = 48/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L +L+E    AE   H+ + R        +   G+  W P G     N+ A  R
Sbjct: 281 KELKGYLHMLEE----AEKRDHRKLGREMNLFHFQEEGPGVVFWHPKGWDIFQNLIAYKR 336

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEV 113
                    E++ P +    LW  SG +  Y   M  +        +D+     P +   
Sbjct: 337 RRLKD-DYKEVNAPQVLHTSLWETSGHWAWYKDNMFSVQCADPESEDDRIFALKPMNCPG 395

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
             +IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E    
Sbjct: 396 HVEIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEEQMAE 454

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K+    L ++   G + I ++  + P     S E    A+   T V  +        
Sbjct: 455 ECLKINDLILSVYEDFGFEEIVVKLSTRPEKRVGSDEVWDHAEAVMTSVLKT-------- 506

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +  S   I         A      E         K    R  + G       
Sbjct: 507 -------IEEQSEGRIKTDILPGEGAFYGPKFEYTL------KDAIGRDWQCGTT---QV 550

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            ++LP    A +   +G K   V +     G+M     ++  ++ G   +W    AP +I
Sbjct: 551 DFNLPERFGAFYVDNNGEKKVPVMIHRAICGSMERFLGILIENYAGHFPLW---FAPLQI 607

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  I +         +++   L   G  V  D   E+I  +     L   P+ ++ G +
Sbjct: 608 VVATITS---EADSYGQEVADLLKSKGLKVETDFRNEKINYKVREHSLAKVPVILVCGMR 664

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              +  V I+   +  +  M L+E +      
Sbjct: 665 EAEERTVNIRRLGSKNQTPMGLDEAVAAFVEE 696


>gi|332523222|ref|ZP_08399474.1| threonine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314486|gb|EGJ27471.1| threonine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 648

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 178/451 (39%), Gaps = 38/451 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   M++ +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S D +  SG +D Y  +M    D  D +  +  P +     ++++ H
Sbjct: 287 ASGYQHVYTPPMASVDFYKTSGHWDHYRDDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T+ +   D M     S      
Sbjct: 406 IIDVYEDFNLTDYRFRLSYR--------------DPNDTEKYFDNDEMWEKAQSMLKAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   G+ +      A++  ++ G    W   +AP ++++I I   ++
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTW---LAPHQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     D+  E++  +   +     P Q+IVG K + +  V ++
Sbjct: 557 AHVDYAWEVAKILRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS-NNRPVL 449
              +      ++E+ +       +  ++PV+
Sbjct: 617 RYGSKATHTETIEQFVETILADIARKSKPVV 647


>gi|332282869|ref|ZP_08395282.1| prolyl-tRNA synthetase [Shigella sp. D9]
 gi|332105221|gb|EGJ08567.1| prolyl-tRNA synthetase [Shigella sp. D9]
          Length = 590

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 249



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 384 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 443

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 444 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 503

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 504 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 563

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 564 YKYRRNGEKQLIKTGDIVEYLVKQIK 589


>gi|307298932|ref|ZP_07578734.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915357|gb|EFN45742.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 648

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 161/439 (36%), Gaps = 39/439 (8%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E   RD       L L T + ++++ G+  +LP G + L+ +    RE+    G
Sbjct: 238 YLRMIEEAKKRDHRKLGPALGLFT-INYEYAPGMPVFLPKGTEMLNQLLQFSREKHVEDG 296

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +D Y   M    ++ D+     P +      +++S   SY
Sbjct: 297 YREVSTPQIMSDALWRTSGHWDHYRDNMY-FTEKEDQQFAVKPMNCPGHIIVYKSSSVSY 355

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP   ++     R E      G+ R R F+  DA+ F  T E  +     +     +I
Sbjct: 356 RDLPMKLFEFGKVHRYERSGVLHGLFRVRGFVQDDAHIF-CTREQIQQEIMGVIDFVQKI 414

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +     +       + P       E   +A         +K   +F +   +  F     
Sbjct: 415 YSPFNFEYR-AELSTRPEDYMGEVELWDIATKALEDSLLAKKM-EFKVNEGDGAFYGPKI 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    DSL    + +   ++      FG KY  P +  +  
Sbjct: 473 DYHIK-------------------DSLGREWQCATIQLDFMMPERFGIKYVGPDNEEY-- 511

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  V +     G++     ++     G    W   +AP ++S+I I        + 
Sbjct: 512 -----QPVMIHRAIFGSVERFMGILIEHFAGAFPAW---LAPTQVSVIPIA---DRHAEY 560

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E + A L   G  V  DD  +    +   A L+  P  +IVG +   D  + ++ R   
Sbjct: 561 AESVAAELKSRGFRVEVDDRQKSTNYKIREAQLMKVPYMIIVGDREKEDGTISVRLRSEK 620

Query: 425 IREDMSLEEVINYASHRFS 443
               ++L+E ++  S   +
Sbjct: 621 DLGSIALQEFMDKLSQEVN 639


>gi|90020556|ref|YP_526383.1| Pectate lyase/Amb allergen [Saccharophagus degradans 2-40]
 gi|114152247|sp|Q21MA8|SYP_SACD2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89950156|gb|ABD80171.1| prolyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 575

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY +   +E P DAE+ SH+LMLR G+I + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRASKYLIATYKETPADAEVISHQLMLRAGLIRKLASGLYNWLPAGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+A   GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPAELWEESGRWQQYGPELLRINDRHDRAFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E  + +Y+ M  +
Sbjct: 121 ELKSYKQLPANFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHASQECLQETYDIMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YCKIFDRIGLDYRPVLADTGSIGGTGSHEFHVLADSGEDDIAFS 224



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSAT 301
              +      A      D+ N  + D  P  K      RGIEVGHIF  GTKYS  M A+
Sbjct: 369 YHYTNANWSDAAEHKVVDIRNVVIGDPSPCGKGTIDIKRGIEVGHIFQLGTKYSEAMKAS 428

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQV 360
               +GKD  + MG YGIG  R+VA+ IE ++D  GIIWPD++APF ++++ I     + 
Sbjct: 429 VLDENGKDKTMIMGCYGIGVSRIVASAIEQNYDDNGIIWPDAIAPFHVAIVPINMQKSEA 488

Query: 361 CRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               CE++YA+L+++G DV   D+   ++G   A  +L+G P +++VG + +   ++E K
Sbjct: 489 VAQKCEELYAQLNQLGYDVLLMDEPKARLGGMLADTELMGIPHRIVVGDRGLEKGQLEYK 548

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R     +D++++++I + ++     +
Sbjct: 549 CRRDSDSQDIAVDDIIEFINNAVKTGK 575


>gi|149180875|ref|ZP_01859377.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148851394|gb|EDL65542.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 647

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 163/445 (36%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +YFL + +   R+     ++L L   M  + + G+  +L  GQK  + + + +R+ QN
Sbjct: 232 LDEYFLFLEEAQKRNHRKLGNELELF--MFSEEAPGMPFYLNNGQKIRNELESFLRQIQN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + +  LW +SG ++ Y + M   ++ +D++    P +      IF+  +
Sbjct: 290 SFDYEEVRTPIMMNRKLWEQSGHWEHYKENMY-FSEVDDQSFALKPMNCPGHMLIFKDKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F +TP+  +          
Sbjct: 349 HSYRDLPIRMAEFGQVHRHEFSGALNGMLRVRTFCQDDAHIF-VTPDQIEEEITSALKLI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P            A+     V     +       +      
Sbjct: 408 DHVYRTFGFNY-DIELSTRPEDYMGEEALWDKAEGSLKNVLTKLGYSFSINEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + + +   ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDIHIKDALKRSHQCATVQLD----FQMPEKF----ELH 498

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +    V +     G++     ++     G   +W   ++P ++S+I +      
Sbjct: 499 YIDENNQKVRPVVIHRAVFGSIDRFLGILIEHFAGAFPVW---LSPLQVSVIPVSKRHHG 555

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE+I +RL + G  V  D   E++G +   A +   P  ++VG K      V ++ 
Sbjct: 556 Q--YCEEIRSRLKEEGLRVECDLREEKLGYKIREAQMKKAPYILVVGDKEQESQTVNVRS 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 ++  LEE I     +  + 
Sbjct: 614 YGEQNSQEEKLEEFIARVKQQIRDK 638


>gi|254037614|ref|ZP_04871691.1| prolyl-tRNA synthetase [Escherichia sp. 1_1_43]
 gi|226840720|gb|EEH72722.1| prolyl-tRNA synthetase [Escherichia sp. 1_1_43]
          Length = 590

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 249



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 384 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 443

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 444 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 503

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 504 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 563

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 564 YKYRRNGEKQLIKTGDIVEYLVKQIK 589


>gi|254785039|ref|YP_003072467.1| proline--tRNA ligase [Teredinibacter turnerae T7901]
 gi|259511626|sp|C5BPN9|SYP_TERTT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|237684457|gb|ACR11721.1| proline--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 574

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 165/225 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAE+ SHKLMLR G+I + + G+Y+WLPLG + L  V  I+R+E
Sbjct: 1   MRASQYLIATQKETPADAEVISHKLMLRAGLIRKMASGLYNWLPLGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A++W ESGR+  YG E+LR+ DR+D+A   GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPVVQPAEIWQESGRWQQYGPELLRINDRHDRAFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF ++ E  + +Y+ M  +
Sbjct: 121 EVKSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHISQESLQETYDVMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R+GL+  P+ A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YCNIFDRIGLQYRPVLADTGSIGGSASHEFHVLADSGEDDIAFSS 225



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           I  +L  E   L   G      +                    L +      A Y+   D
Sbjct: 328 IKNELGAEVGSLGPIGLKITVIADRAAAACADFVCGANKTDYHLINANWDKEASYSRVED 387

Query: 262 VHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           + N  + D  P  K      RGIEVGHIF  GTKYS  M AT    +GKD  + MG YGI
Sbjct: 388 LRNVVVGDPSPCGKGTIEIKRGIEVGHIFQLGTKYSAAMKATVLDENGKDVTMTMGCYGI 447

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCD 378
           G  R+VA+ IE +HD  GIIWPD++APF+++++ I  H     ++ACE +Y +    G D
Sbjct: 448 GVSRIVASAIEQNHDDNGIIWPDAIAPFQLAIVPINMHKSDAVKEACETLYDQCQTAGID 507

Query: 379 VFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V   D+   ++G+  A  +L+G P +V++G + +    +E K R     ++++   +  +
Sbjct: 508 VLLMDEPKARLGAMLADVELVGIPHRVVIGDRGLEQGNIEYKGRRDAESQEVAAASLFEF 567

Query: 438 ASHRFS 443
              + +
Sbjct: 568 LREKIA 573


>gi|224476774|ref|YP_002634380.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783537|sp|B9DNC9|SYT_STACT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222421381|emb|CAL28195.1| threonyl-tRNA synthetase 1 [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 647

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 169/446 (37%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L          G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERKERDHRKIGKELDLFMN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
            G   +  P + + +L+  SG +D Y  +M      ++ + M+  P +      I+++  
Sbjct: 288 LGYDHVYTPVMANVELYKTSGHWDHYQDDMFPPMKLDETEEMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVELI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++   G ++   R                  D  + + +   D M     S   +  D
Sbjct: 407 LDVYEDFGFENYSFRLSYR--------------DPEDKEKYFDDDEMWERAESMLKEAVD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++ L     
Sbjct: 453 EMG--LPYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERFDLA---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG++H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGKDGEEHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVEIIPVNV--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   +I   L   G  V  DD  E++G +   A +   P Q+++G K + +++V ++ 
Sbjct: 558 HYDYARQIQDELKSQGVRVEIDDRNEKMGYKIREAQMHKIPYQLVIGDKEIENNEVNVRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSKDQETVEKDEFIWNLVDEIRLKK 643


>gi|326336128|ref|ZP_08202300.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691637|gb|EGD33604.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 649

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 167/452 (36%), Gaps = 41/452 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q 
Sbjct: 227 LTEYLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +   +L+V SG ++ YGK+  +        +  +  P +     +I+ S
Sbjct: 286 QAGYEQVVTPHIGHKNLYVTSGHWEKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H  SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +  
Sbjct: 346 HPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDAEFKHVID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG ++   +                      ++   S +       +     
Sbjct: 405 LVLYVFGSLGFENFTAQVSLRD-------------PENLSKYIGSDENWAKAESAIINAA 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            +      I     A Y    D   +              R  ++G I      Y+LP  
Sbjct: 452 KEKNLTYVIETGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPER 498

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +KGAD + H  V +     G+M    A++     G   +W   + P +++++++  
Sbjct: 499 FDLWYKGADNEMHRPVMIHRAPFGSMERFVAILLEHTAGNLPLW---LVPEQVNILSV-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +       K+   L +       D+  E IG +   A+   +P  +IVG +   +  +
Sbjct: 554 -SEKYEGYAYKVANLLQEADLRPHVDNRNETIGKKIREAETQKYPYMIIVGEEEEKNGTL 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN-RP 447
            ++         M + + I       + N RP
Sbjct: 613 SVRKHGGADLGTMKIADFITLIQEEINKNIRP 644


>gi|229085293|ref|ZP_04217535.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228698012|gb|EEL50755.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 642

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + + +RE Q 
Sbjct: 232 LESYLQFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELESFLREIQQ 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P + +  LW ESG +D Y   M   ++ ++K+    P +      +F+  +
Sbjct: 290 KYDYQEVRTPIMMNQGLWEESGHWDHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKHKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R E      G++R R F   DA+ F +TPE  +     +    
Sbjct: 349 RSYRDLPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLF-VTPEQIESEIKSVLQQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P       E    A++    V  S ++       +      
Sbjct: 408 DYVYRTFGFEY-EVELSTRPEDSMGDVELWNQAESALENVLESLNYKYRVNEGDG----- 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D+L  + +     ++    F    K+       
Sbjct: 462 ---------------AFYGPKIDFHIKDALKRSHQCGTVQLD----FQMPEKF----DLN 498

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    + K   V +    +G+      ++     G    W   +A  ++ +I +     V
Sbjct: 499 YIDERNEKRRPVVIHRAVLGSFDRFLGILIEHFGGAFPAW---LASVQVKIIPVSNL--V 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  ++I  +L  VG  V  D  GE++G +   A +   P  +++G K + +  V ++ 
Sbjct: 554 HEEYTKEIEEKLQSVGLRVERDVRGEKLGYKIREAQIQKVPYVLVIGDKEMENGAVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                 E +SL   I        N +
Sbjct: 614 YGEEKSEVVSLATFIESLQVEIHNRK 639


>gi|290512444|ref|ZP_06551810.1| prolyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|289774785|gb|EFD82787.1| prolyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 583

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 12  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 72  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 132 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 192 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 242



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 377 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAM 436

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A  +G DG++  + MG YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H 
Sbjct: 437 NAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHK 496

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 497 SYRVQELAEKLYAELRAHGIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 556

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y      
Sbjct: 557 YKYRRNGEKQLIKTGDIVEYLVKAIK 582


>gi|15799876|ref|NP_285888.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15829450|ref|NP_308223.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168752178|ref|ZP_02777200.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168765280|ref|ZP_02790287.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168769963|ref|ZP_02794970.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168777697|ref|ZP_02802704.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168782925|ref|ZP_02807932.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168789305|ref|ZP_02814312.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168802460|ref|ZP_02827467.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|195939891|ref|ZP_03085273.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208809448|ref|ZP_03251785.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208812619|ref|ZP_03253948.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208821168|ref|ZP_03261488.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209398549|ref|YP_002268803.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217324314|ref|ZP_03440398.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254791327|ref|YP_003076164.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|261226949|ref|ZP_05941230.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255353|ref|ZP_05947886.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281017|ref|YP_003497835.1| Prolyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|81848971|sp|Q8X8W2|SYP_ECO57 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731431|sp|B5Z0H4|SYP_ECO5E RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12512925|gb|AAG54496.1|AE005195_5 proline tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13359652|dbj|BAB33619.1| proline tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187767123|gb|EDU30967.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188013912|gb|EDU52034.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|188999651|gb|EDU68637.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189361055|gb|EDU79474.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189364925|gb|EDU83341.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189371068|gb|EDU89484.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189375548|gb|EDU93964.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|208729249|gb|EDZ78850.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208733896|gb|EDZ82583.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208741291|gb|EDZ88973.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209159949|gb|ACI37382.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209745624|gb|ACI71119.1| proline tRNA synthetase [Escherichia coli]
 gi|209745626|gb|ACI71120.1| proline tRNA synthetase [Escherichia coli]
 gi|209745628|gb|ACI71121.1| proline tRNA synthetase [Escherichia coli]
 gi|209745630|gb|ACI71122.1| proline tRNA synthetase [Escherichia coli]
 gi|209745632|gb|ACI71123.1| proline tRNA synthetase [Escherichia coli]
 gi|217320535|gb|EEC28959.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254590727|gb|ACT70088.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290760890|gb|ADD54851.1| Prolyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320190279|gb|EFW64929.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320640001|gb|EFX09586.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320644771|gb|EFX13815.1| prolyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320652927|gb|EFX21165.1| prolyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320658315|gb|EFX26044.1| prolyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663625|gb|EFX30909.1| prolyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668938|gb|EFX35733.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
 gi|326339750|gb|EGD63558.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|326345084|gb|EGD68827.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 572

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|212212292|ref|YP_002303228.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010702|gb|ACJ18083.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 660

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 160/454 (35%), Gaps = 55/454 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+L+ +          S G   W P G   +  +   IR
Sbjct: 235 KALKAYLYRLEE----AEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIR 290

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF
Sbjct: 291 HITHKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEPQQY-VIKPMSCPAHVQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP  + +     R+E      G+MR R F+  DA+ F  T +  +   +  
Sbjct: 350 NQGVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIF-CTEDQIQSEVSAF 408

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   +  +  + P     S E    A+    +    K      +P E  
Sbjct: 409 IDQLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGEGA 468

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
            +   I  +                                     +G I+  GT    +
Sbjct: 469 FYGPKIEFSLRDC---------------------------------LGRIWQCGTVQVDF 495

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           S+P  + A +   DG K   V +    +G+      ++     GK  +W   +AP ++ +
Sbjct: 496 SVPERLGAHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVV 552

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI        D   +    L  +G     D   E+IG +     +   P  V++G + V
Sbjct: 553 MNIT---DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREV 609

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +D  + ++         ++LEE         S  
Sbjct: 610 ADKTLSVRALEDEASTTITLEEFARQLKAEISQR 643


>gi|165924098|ref|ZP_02219930.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|165916454|gb|EDR35058.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
          Length = 653

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 160/454 (35%), Gaps = 55/454 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+L+ +          S G   W P G   +  +   IR
Sbjct: 235 KALKAYLYRLEE----AEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIR 290

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF
Sbjct: 291 HITHKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEPQQY-VIKPMSCPAHVQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP  + +     R+E      G+MR R F+  DA+ F  T +  +   +  
Sbjct: 350 NQGVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIF-CTEDQIQSEVSAF 408

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   +  +  + P     S E    A+    +    K      +P E  
Sbjct: 409 IDQLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGEGA 468

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
            +   I  +                                     +G I+  GT    +
Sbjct: 469 FYGPKIEFSLRDC---------------------------------LGRIWQCGTVQVDF 495

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           S+P  + A +   DG K   V +    +G+      ++     GK  +W   +AP ++ +
Sbjct: 496 SVPERLGAHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVV 552

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI        D   +    L  +G     D   E+IG +     +   P  V++G + V
Sbjct: 553 MNIT---DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREV 609

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +D  + ++         ++LEE         S  
Sbjct: 610 ADKTLSVRALEDEASTTITLEEFARQLKAEISQR 643


>gi|154245583|ref|YP_001416541.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|154159668|gb|ABS66884.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 660

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 153/452 (33%), Gaps = 48/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +    ++  L+E    AE   H+ + R        +   G   W P G      + A +R
Sbjct: 227 KELNAYIHRLEE----AEKRDHRRLGREMDLFHFQEEGPGTVFWHPKGWTLFQELVAYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEV 113
                    E++ P +  A LW  SG +  Y + M ++       ++++     P +   
Sbjct: 283 RRLK-ADYNEVNAPQVLDAGLWETSGHWGWYKENMFKVQSAGDETKDERVFALKPMNCPG 341

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E    
Sbjct: 342 HVQIFKHGLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHVF-CTEEQMAA 400

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K+    L  +   G   I ++  + P     S      A+   T+V           
Sbjct: 401 ECLKINDLILSTYADFGFDEIVVKLSTRPEKRVGSDAVWDHAEEVMTRVL---------- 450

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +  S   I         A      E         K    R  + G       
Sbjct: 451 -----AEIEAASGGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QV 496

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            ++LP    A +  ADG K   V +     G+M     ++     G   +W   +AP ++
Sbjct: 497 DFNLPERFGAFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLW---LAPTQV 553

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  I +      D   ++   L   G  V  D   E+I  +     L   P+ ++ G K
Sbjct: 554 VVATITSD---ADDYAAEVAELLKAEGLRVELDVRNEKINLKVREHSLAKVPVLLVAGKK 610

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             ++  + I+   +  +   +L+EV+      
Sbjct: 611 EAAERTLSIRRLGSNAQTGGTLDEVVAALVDE 642


>gi|134301672|ref|YP_001121640.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166223343|sp|A4IX68|SYT_FRATW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134049449|gb|ABO46520.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 634

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 156/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +     +P E   +   
Sbjct: 404 EVYKDFGFNDFAIKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELLPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+    V +    +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|309700402|emb|CBI99691.1| prolyl-tRNA synthetase [Escherichia coli ETEC H10407]
          Length = 572

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R    ++ +   ++++Y   +  
Sbjct: 546 YKYRRNCEKQLIKTGDIVDYLVKQIK 571


>gi|328951014|ref|YP_004368349.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451338|gb|AEB12239.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 647

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 165/450 (36%), Gaps = 45/450 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
              Y   + +   RD      +L L   +I     KG+  WLP G    + +   +REEQ
Sbjct: 235 LDHYLWQLEEAKKRDHRKLGRELELF--LIDPMVGKGLPLWLPKGNTVRELLVQFMREEQ 292

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G   ++ P + S +L+  SG Y  Y        +  D+A +  P +      I+ + 
Sbjct: 293 LRRGYQLVTTPHVGSLELYKTSGHYPYYADSQFPPIELEDEAYLLKPMNCPHHIRIYAAR 352

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP    +    +R E      G+ R R F   DA+ F  TPE  K  +  +   
Sbjct: 353 PRSYRELPLRLAEFGTVYRFEQSGELHGLTRVRGFTQDDAHIF-CTPEQVKEEFLSVLDL 411

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV--FCSKDFMDFPIPSENTD 238
            + +F  LG+++   R        D            E Q+   C +  + + + + +  
Sbjct: 412 TMHVFRTLGMENYRARIGVRDPSSDKYVGEDAKWALAERQIQEACEEVGLAYTVEAGDAA 471

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           F        + +                             R  ++G I      Y+LP 
Sbjct: 472 FYGPKLDFVVRD--------------------------ALGREWQLGTI---QVDYNLPE 502

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG+ H  V +     G++     ++     G+  +W   +AP ++ ++ I 
Sbjct: 503 RFDLTYVGPDGEPHRPVMIHRAPFGSLERFIGILIEHFAGEFPLW---LAPVQVVVVPIT 559

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      ++   L + G  V  D   E++ ++   A+    P+ ++VG + V+   
Sbjct: 560 ---DRHLAYAREVAQALREAGIRVEVDTRSERMNAKIRDAETQKVPVILVVGDQEVAQRT 616

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R T  R    LE V+     R    
Sbjct: 617 VAVRDRRTKERATRPLEAVVQDLVARVQAR 646


>gi|320180897|gb|EFW55819.1| prolyl-tRNA synthetase [Shigella boydii ATCC 9905]
          Length = 572

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPKIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|269119235|ref|YP_003307412.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613113|gb|ACZ07481.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 634

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 167/441 (37%), Gaps = 46/441 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD      +L L    + +H  G   ++P G + ++ +  I R E  + G
Sbjct: 230 YLIMMEEAEKRDHRKLGKQLNLF--FLDEHGPGFPFFMPKGMEVINKLQEIWRREHKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW  SG + +Y + M   ++ ++K     P +       +++++ SY
Sbjct: 288 YKEIKTPVMLDKELWEISGHWFNYRENMYT-SEIDEKEYAIKPMNCPGAILAYKNNLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +N P  + ++ L  R E      G+MR R F   DA+ F  T +  +    ++   Y R 
Sbjct: 347 KNFPLKYGEMGLVHRHEFSGALHGLMRVRAFTQDDAHVF-CTEDQIEDQIMEIINLYDRF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   +A+   T             P +   +   I 
Sbjct: 406 YKLFGFEY-NIELSTKPDKAIGSDEIWDIAERDLTNALVKMGIDYKLNPGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      ++LP     ++
Sbjct: 465 FK---------------------------MKDSIGRIWQCGTI---QLDFNLPLRFHMSY 494

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H  V +     G++     ++   + G   IW   +AP ++S++ I       
Sbjct: 495 IGPDGEKHQPVMIHRAMYGSIERFMGILIEHYAGAFPIW---LAPVQVSILTISG---EQ 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKH 420
            +    ++ +L  +G     D   E+IG +   A+     P+Q+I+G   V++++V I+ 
Sbjct: 549 AEYASDLFKKLQNIGIRTELDIRDEKIGYKIREANAEQKIPIQLIIGKNEVANNEVNIRR 608

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +     M  E+ +      
Sbjct: 609 FGSQESNTMKAEDFLKLIEEE 629


>gi|218703449|ref|YP_002410968.1| prolyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293403264|ref|ZP_06647361.1| prolyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|293408287|ref|ZP_06652127.1| prolyl-tRNA synthetase [Escherichia coli B354]
 gi|298378800|ref|ZP_06988684.1| prolyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300900763|ref|ZP_07118909.1| prolyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|301025919|ref|ZP_07189405.1| prolyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|331661569|ref|ZP_08362493.1| proline--tRNA ligase [Escherichia coli TA143]
 gi|226701283|sp|B7N862|SYP_ECOLU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218430546|emb|CAR11412.1| prolyl-tRNA synthetase [Escherichia coli UMN026]
 gi|284919970|emb|CBG33025.1| prolyl-tRNA synthetase [Escherichia coli 042]
 gi|291430179|gb|EFF03193.1| prolyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|291472538|gb|EFF15020.1| prolyl-tRNA synthetase [Escherichia coli B354]
 gi|298281134|gb|EFI22635.1| prolyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300355748|gb|EFJ71618.1| prolyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300395774|gb|EFJ79312.1| prolyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|331061484|gb|EGI33447.1| proline--tRNA ligase [Escherichia coli TA143]
 gi|332341528|gb|AEE54862.1| prolyl-tRNA synthetase ProS [Escherichia coli UMNK88]
          Length = 572

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVDYLVKQIK 571


>gi|218693660|ref|YP_002401327.1| prolyl-tRNA synthetase [Escherichia coli 55989]
 gi|256021628|ref|ZP_05435493.1| prolyl-tRNA synthetase [Shigella sp. D9]
 gi|293476853|ref|ZP_06665261.1| prolyl-tRNA synthetase [Escherichia coli B088]
 gi|300921804|ref|ZP_07137964.1| prolyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|301325160|ref|ZP_07218690.1| prolyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|254782900|sp|B7LHA4|SYP_ECO55 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218350392|emb|CAU96077.1| prolyl-tRNA synthetase [Escherichia coli 55989]
 gi|291321306|gb|EFE60748.1| prolyl-tRNA synthetase [Escherichia coli B088]
 gi|300421799|gb|EFK05110.1| prolyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300847966|gb|EFK75726.1| prolyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|323935035|gb|EGB31408.1| prolyl-tRNA synthetase [Escherichia coli E1520]
          Length = 572

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|194428300|ref|ZP_03060842.1| prolyl-tRNA synthetase [Escherichia coli B171]
 gi|194413675|gb|EDX29955.1| prolyl-tRNA synthetase [Escherichia coli B171]
          Length = 572

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++  + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLSDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|30061751|ref|NP_835922.1| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56479623|ref|NP_706140.2| prolyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|74310815|ref|YP_309234.1| prolyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|82542793|ref|YP_406740.1| prolyl-tRNA synthetase [Shigella boydii Sb227]
 gi|157159661|ref|YP_001456979.1| prolyl-tRNA synthetase [Escherichia coli HS]
 gi|162139361|ref|YP_687766.2| prolyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|170021452|ref|YP_001726406.1| prolyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|187730943|ref|YP_001878997.1| prolyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|188494186|ref|ZP_03001456.1| prolyl-tRNA synthetase [Escherichia coli 53638]
 gi|193063143|ref|ZP_03044234.1| prolyl-tRNA synthetase [Escherichia coli E22]
 gi|193067639|ref|ZP_03048606.1| prolyl-tRNA synthetase [Escherichia coli E110019]
 gi|194439920|ref|ZP_03071982.1| prolyl-tRNA synthetase [Escherichia coli 101-1]
 gi|209917387|ref|YP_002291471.1| prolyl-tRNA synthetase [Escherichia coli SE11]
 gi|218552775|ref|YP_002385688.1| prolyl-tRNA synthetase [Escherichia coli IAI1]
 gi|253774778|ref|YP_003037609.1| prolyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160314|ref|YP_003043422.1| prolyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|256025507|ref|ZP_05439372.1| prolyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|260842426|ref|YP_003220204.1| prolyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260853405|ref|YP_003227296.1| prolyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|293418080|ref|ZP_06660702.1| prolyl-tRNA synthetase [Escherichia coli B185]
 gi|297519907|ref|ZP_06938293.1| prolyl-tRNA synthetase [Escherichia coli OP50]
 gi|300820114|ref|ZP_07100286.1| prolyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300825388|ref|ZP_07105464.1| prolyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300932153|ref|ZP_07147436.1| prolyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300949771|ref|ZP_07163746.1| prolyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300956080|ref|ZP_07168404.1| prolyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301028690|ref|ZP_07191910.1| prolyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|301646520|ref|ZP_07246394.1| prolyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|307136795|ref|ZP_07496151.1| prolyl-tRNA synthetase [Escherichia coli H736]
 gi|307311357|ref|ZP_07590999.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|331640649|ref|ZP_08341797.1| proline--tRNA ligase [Escherichia coli H736]
 gi|331666440|ref|ZP_08367321.1| proline--tRNA ligase [Escherichia coli TA271]
 gi|331680776|ref|ZP_08381435.1| proline--tRNA ligase [Escherichia coli H591]
 gi|81839318|sp|Q83MC8|SYP_SHIFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152250|sp|Q325U6|SYP_SHIBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152252|sp|Q3Z5G3|SYP_SHISS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148887036|sp|Q0T815|SYP_SHIF8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980120|sp|A7ZWE2|SYP_ECOHS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083498|sp|B1IQE6|SYP_ECOLC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701281|sp|B7M1Z9|SYP_ECO8A RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701284|sp|B6HZR3|SYP_ECOSE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701339|sp|B2U338|SYP_SHIB3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30039993|gb|AAP15727.1| proline tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56383174|gb|AAN41847.2| proline tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|73854292|gb|AAZ86999.1| proline tRNA synthetase [Shigella sonnei Ss046]
 gi|81244204|gb|ABB64912.1| proline tRNA synthetase [Shigella boydii Sb227]
 gi|157065341|gb|ABV04596.1| prolyl-tRNA synthetase [Escherichia coli HS]
 gi|169756380|gb|ACA79079.1| prolyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|187427935|gb|ACD07209.1| prolyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|188489385|gb|EDU64488.1| prolyl-tRNA synthetase [Escherichia coli 53638]
 gi|192931051|gb|EDV83654.1| prolyl-tRNA synthetase [Escherichia coli E22]
 gi|192959051|gb|EDV89487.1| prolyl-tRNA synthetase [Escherichia coli E110019]
 gi|194421166|gb|EDX37191.1| prolyl-tRNA synthetase [Escherichia coli 101-1]
 gi|209910646|dbj|BAG75720.1| prolyl-tRNA synthase [Escherichia coli SE11]
 gi|218359543|emb|CAQ97083.1| prolyl-tRNA synthetase [Escherichia coli IAI1]
 gi|242376026|emb|CAQ30709.1| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253325822|gb|ACT30424.1| prolyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972215|gb|ACT37886.1| prolyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253976424|gb|ACT42094.1| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|257752054|dbj|BAI23556.1| prolyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257757573|dbj|BAI29070.1| prolyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|281599550|gb|ADA72534.1| putative prolyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|291430798|gb|EFF03796.1| prolyl-tRNA synthetase [Escherichia coli B185]
 gi|299878289|gb|EFI86500.1| prolyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300317074|gb|EFJ66858.1| prolyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300450836|gb|EFK14456.1| prolyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300460090|gb|EFK23583.1| prolyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300522148|gb|EFK43217.1| prolyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300527328|gb|EFK48390.1| prolyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|301075273|gb|EFK90079.1| prolyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|306908336|gb|EFN38834.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|315059413|gb|ADT73740.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|315616320|gb|EFU96938.1| prolyl-tRNA synthetase [Escherichia coli 3431]
 gi|320173324|gb|EFW48527.1| prolyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|320186617|gb|EFW61342.1| prolyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|320200278|gb|EFW74864.1| prolyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|323157966|gb|EFZ44068.1| prolyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|323165899|gb|EFZ51681.1| prolyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323170987|gb|EFZ56636.1| prolyl-tRNA synthetase [Escherichia coli LT-68]
 gi|323380028|gb|ADX52296.1| prolyl-tRNA synthetase [Escherichia coli KO11]
 gi|323939929|gb|EGB36127.1| prolyl-tRNA synthetase [Escherichia coli E482]
 gi|323945673|gb|EGB41722.1| prolyl-tRNA synthetase [Escherichia coli H120]
 gi|323959956|gb|EGB55603.1| prolyl-tRNA synthetase [Escherichia coli H489]
 gi|323970674|gb|EGB65930.1| prolyl-tRNA synthetase [Escherichia coli TA007]
 gi|324019415|gb|EGB88634.1| prolyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|324118316|gb|EGC12211.1| prolyl-tRNA synthetase [Escherichia coli E1167]
 gi|331040395|gb|EGI12602.1| proline--tRNA ligase [Escherichia coli H736]
 gi|331066651|gb|EGI38528.1| proline--tRNA ligase [Escherichia coli TA271]
 gi|331072239|gb|EGI43575.1| proline--tRNA ligase [Escherichia coli H591]
 gi|332762067|gb|EGJ92338.1| prolyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|332765044|gb|EGJ95272.1| prolyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332768698|gb|EGJ98878.1| prolyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333009265|gb|EGK28721.1| prolyl-tRNA synthetase [Shigella flexneri K-218]
 gi|333010690|gb|EGK30123.1| prolyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333011036|gb|EGK30455.1| prolyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333021831|gb|EGK41080.1| prolyl-tRNA synthetase [Shigella flexneri K-227]
 gi|333022223|gb|EGK41462.1| prolyl-tRNA synthetase [Shigella flexneri K-304]
          Length = 572

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|73667547|ref|YP_303563.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ehrlichia canis
           str. Jake]
 gi|123745825|sp|Q3YQP0|SYT_EHRCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72394688|gb|AAZ68965.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ehrlichia canis
           str. Jake]
          Length = 633

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 162/437 (37%), Gaps = 44/437 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +++   RD      +L L    I   + G   W   G      +   IR++    G
Sbjct: 231 YLNNLIEIEKRDHRKIGKELELF--HIQNEACGQVFWHKKGWTIYRTIENYIRKKLETNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P L + +LW +SG +D + + M  L++  DK +   P +      IF S I+SY
Sbjct: 289 YIEVKTPMLLNKELWEKSGHWDKFRENMF-LSEAEDKVLAIKPMNCPCHIQIFNSKIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G+MR R F   DA+ F  T         K     + +
Sbjct: 348 RDLPIRMAEFGICHRYEASGALHGLMRVRGFTQDDAHIF-CTESQVISEALKFCNLLMEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I ++    P     S E    A++   +   + +      P +   +   + 
Sbjct: 407 YKDFGFTNILVKFSDRPENRAGSDETWDRAESALKKSVEAANLNYVLNPGDGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 F---------------------------VLKDAIGREWQCGT---LQMDFVLPERLGAYY 496

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DGK H+  M     +G       ++   H GK  IW   +AP ++S++ I    +  
Sbjct: 497 VGSDGKKHHPIMLHRAILGTFERFIGILIEHHSGKFPIW---LAPTQLSILTI---SEES 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +  +  +    V  D   E+I  +         P+  IVG K V+++ V I++ 
Sbjct: 551 IEYANSLKTKAEEHNIRVELDATNEKINYKIRNHIHKKIPVFWIVGKKEVNENSVSIRYL 610

Query: 422 LTGIREDMSLEEVINYA 438
            +  ++ M +++ +   
Sbjct: 611 ESNTQQVMPIDKALKTL 627


>gi|294634711|ref|ZP_06713243.1| proline--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291091887|gb|EFE24448.1| proline--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 572

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFS 224



 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+        RGIEVGHIF  GTKY+  +
Sbjct: 366 DGKHYFGINWERDVALPQVADIRNVVEGDPSPDGHGTLLIKRGIEVGHIFQLGTKYTEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 NATVQGEDGRNQLMTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +D  E++Y  L   G +V  DD  E+ G  FA  +L+G P  +++G + + +++VE
Sbjct: 486 SFRVKDVAERLYDALRLKGIEVLLDDRKERPGVMFADMELIGIPYTIVIGDRNLDNNEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +  +SL+E+  +   + +
Sbjct: 546 YKYRRDGEKLMISLDEIEAFLLAQIA 571


>gi|332686097|ref|YP_004455871.1| threonyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332370106|dbj|BAK21062.1| threonyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 647

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 168/447 (37%), Gaps = 38/447 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K F+ + +E   RD      +L L   MI  +   G+  WLP G      +   I +++ 
Sbjct: 230 KEFIKMQEEAKERDHRKLGKELDLF--MISQEVGSGLPFWLPKGATIRRTIERYITDKEI 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSH 121
             G   +  P + + DL+  SG +  Y ++M    D  D  M +  P +      +++  
Sbjct: 288 SLGYQHVYTPIMANVDLYKTSGHWAHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKDT 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + ++   
Sbjct: 348 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKEEFKRILEL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L ++    +     R                  D      +   D M     +      
Sbjct: 407 MLAVYKDFNITDYKFRLSYR--------------DPNNKDKYFDDDAMWTKAQTMLKGAM 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 453 DELKLD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DL 502

Query: 301 TFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T+ G DG++    V +    +  M    + +   + G   +W   +AP + ++I +    
Sbjct: 503 TYIGEDGENNHRPVVIHRGIVSTMERFVSYLIEVYKGAFPLW---LAPIQATIIPVSV-- 557

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +   RL   G  +  DD  E++G +   +     P Q++VG K V DS V I
Sbjct: 558 DAHSDYAYETKERLQMRGLRIEVDDRNEKMGYKIRASQTQKIPYQIVVGDKEVDDSTVTI 617

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +H  +   E M+L   I+      SN 
Sbjct: 618 RHYGSKETEVMALNLFIDSLIAEISNY 644


>gi|307945488|ref|ZP_07660824.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307771361|gb|EFO30586.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 656

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 154/449 (34%), Gaps = 48/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        +   G+  W   G     N+ + +R   
Sbjct: 237 KAYLHMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHDKGWTLFQNLVSYMRRRL 292

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTD 116
           +     E++ P + S  LW  SG +  Y + M  +      D +       P +      
Sbjct: 293 SG-DYQEVNAPQVLSTKLWETSGHWAWYKENMFAVQGADPEDEDTHVFALKPMNCPGHIQ 351

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       
Sbjct: 352 IFKHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTDEQMAEECL 410

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L ++   G + I ++  + P     S E    A+         K        S 
Sbjct: 411 KINDLILSVYEHFGFEKIVVKLSTRPEKRVGSDELWDHAEE-----VMGKVLEQIKEQSG 465

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                DI+            Y                       R  + G        ++
Sbjct: 466 GRVETDILPGEGAFYGPKFEYTLRDA----------------IGREWQCGTT---QVDFN 506

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   +G+    V +     G+M     ++  ++ G   +W   +AP ++ + 
Sbjct: 507 LPERFGAFYVDNNGEKQTPVMIHRAICGSMERFLGILIENYSGHFPLW---LAPLQVVVA 563

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      D   ++  +L   G  V  D   E+I  +     L   P  V+ G +   
Sbjct: 564 TITS---EADDYGREVAGKLRAAGLKVETDFRNEKINYKVREHSLAKVPAIVVCGMREAE 620

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V I+   +  +  MSL+E I      
Sbjct: 621 EKSVNIRRLGSKHQTAMSLDEAIEAFRSE 649


>gi|300920118|ref|ZP_07136571.1| prolyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300412852|gb|EFJ96162.1| prolyl-tRNA synthetase [Escherichia coli MS 115-1]
          Length = 572

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|291515296|emb|CBK64506.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Alistipes shahii
           WAL 8301]
          Length = 604

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 169/454 (37%), Gaps = 44/454 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD       L L T    +  +G+  WLP G    D +   +R  Q 
Sbjct: 181 LDEYLAMMEEAKKRDHRKLGKDLELFT-FSQRVGQGLPLWLPKGAALRDRLEQFLRGVQK 239

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G  ++  P + + +L+V SG Y  YGK+  +        +  +  P +     +I+RS
Sbjct: 240 EYGYQQVITPHIGNKELYVTSGHYAKYGKDSFQPIHTPIEGEEYLLKPMNCPHHCEIYRS 299

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP    +    +R E      G+ R R F   DA+ F + P+     + ++  
Sbjct: 300 KPRSYKELPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-VRPDQLLEEFERVID 358

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L IF  L   +   +                  D    + +   D       S     
Sbjct: 359 IVLYIFKTLKFDNYTAQISLR--------------DPNNKEKYIGSDENWEKAESAIMQA 404

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                L ++VE   A +                  K    R  ++G I      Y+LP  
Sbjct: 405 AKEKGLTTVVELGEAAFYGPKLDF---------MVKDAIGRKWQLGTI---QVDYNLPER 452

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+KGAD + H  + +     G+M    AV+     GK  +W   ++P ++ ++ I  
Sbjct: 453 FDLTYKGADDRLHRPIMIHRAPFGSMERFVAVLLEHTGGKFPLW---LSPQQVVVLPI-- 507

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D  +K+   L++       DD  E+IG +    +L   P  +IVG K  ++  V
Sbjct: 508 -SEKFNDYAQKVSEFLNRSDVRTEVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLV 566

Query: 417 EIKHRLTGIREDMSLEEVINYA----SHRFSNNR 446
            ++ +  G +  MSLE   ++           N+
Sbjct: 567 SVRAQGEGDKGQMSLEAFRDFIAGLVKEEIEANK 600


>gi|260866343|ref|YP_003232745.1| prolyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|257762699|dbj|BAI34194.1| prolyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
          Length = 572

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++I Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIIEYLVKQIK 571


>gi|82775586|ref|YP_401933.1| prolyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|114152251|sp|Q32JR3|SYP_SHIDS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81239734|gb|ABB60444.1| proline tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 572

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|194435019|ref|ZP_03067260.1| prolyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|300902015|ref|ZP_07120042.1| prolyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|301305332|ref|ZP_07211428.1| prolyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|331651100|ref|ZP_08352128.1| proline--tRNA ligase [Escherichia coli M718]
 gi|331671699|ref|ZP_08372497.1| proline--tRNA ligase [Escherichia coli TA280]
 gi|194416755|gb|EDX32883.1| prolyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|300405901|gb|EFJ89439.1| prolyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300839437|gb|EFK67197.1| prolyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|315254998|gb|EFU34966.1| prolyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|331051554|gb|EGI23603.1| proline--tRNA ligase [Escherichia coli M718]
 gi|331071544|gb|EGI42901.1| proline--tRNA ligase [Escherichia coli TA280]
 gi|332095137|gb|EGJ00169.1| prolyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332097597|gb|EGJ02574.1| prolyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 572

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|191167053|ref|ZP_03028875.1| prolyl-tRNA synthetase [Escherichia coli B7A]
 gi|309796373|ref|ZP_07690782.1| prolyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|190902946|gb|EDV62673.1| prolyl-tRNA synthetase [Escherichia coli B7A]
 gi|308120077|gb|EFO57339.1| prolyl-tRNA synthetase [Escherichia coli MS 145-7]
          Length = 572

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|327481520|gb|AEA84830.1| prolyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 571

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+W+P+G +AL    AI+REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWMPMGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNKAGALEVLMPAIQPAELWQESGRWEQYGPELLRLKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF L+ E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLSQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCNIFTRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAFSDSSDYAA 231



 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 119/205 (58%), Gaps = 4/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGLNWERDLPLPQVADLRNVVAGDPSPDGKGSLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G +GK   + MG YGIG  RVVAA IE ++D +GI+WPD++APF+I+L+ +K   
Sbjct: 424 NCQVMGENGKPATLIMGCYGIGVSRVVAAAIEQNYDERGILWPDALAPFQIALVPMKYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 EAVREATDKLYAELTAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSDRGLADGML 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           E KHR     + ++  E++++ + R
Sbjct: 544 EYKHRRDAQPQPVAASEILSFINSR 568


>gi|257087763|ref|ZP_05582124.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995793|gb|EEU83095.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
          Length = 645

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVRNY 643


>gi|254491952|ref|ZP_05105130.1| prolyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224462767|gb|EEF79038.1| prolyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 569

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   +  L+E P DAEI SH+LMLR G+I + + G+Y+WLP+G K L    AIIR+E
Sbjct: 1   MRASNLLISTLKETPADAEIVSHQLMLRAGLIRRLASGLYTWLPMGLKVLRKTEAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P++Q ++LW ES R++ YG E+LR+ DR+ +   YGPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPSVQPSELWQESQRWEKYGPELLRITDRHQREFCYGPTHEEVITDLVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFG+MR+REFLMKDAYSF L     + +Y+ MF +
Sbjct: 121 EIRSYKQLPINFYQIQTKFRDEIRPRFGLMRAREFLMKDAYSFHLDHASLQQTYDDMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL   P++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRIGLDFRPVQADTGSIGGNASHEFHVLASSGEDAIAFSDQSDYAA 231



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D   L  +          T+D+ N    D  P+ +     ARGIEVGHIF  G  YS  +
Sbjct: 364 DDKHLTGVNWGRDLAEPDTADLRNVVAGDPSPDGQGTLDIARGIEVGHIFQLGENYSSKL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A      GK   + MG YGIG  RVVAA IE ++D +GIIWP+++AP+++ L+ + AH 
Sbjct: 424 NAVVLNETGKSQVITMGCYGIGVSRVVAAAIEQNNDDRGIIWPEAIAPYQVVLVPVNAHK 483

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            V  +   E+IY +L   G DV  DD G + G  FA  +L+G P ++I+G + + +  +E
Sbjct: 484 SVRVKQKAEEIYQQLQAAGIDVLLDDRGLRPGVAFADMELIGIPHRLILGERGLDNGMIE 543

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R TG  ++  +E VI     + S
Sbjct: 544 YKSRRTGEGDEFPIESVIETIKQKLS 569


>gi|239994929|ref|ZP_04715453.1| prolyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 440

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 158/235 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL    + A+SG IGG+ SHEF VLA +GE  +  S D         
Sbjct: 181 YCNIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAASGEDDIAFSSDSDYAANVEM 235



 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            N    D+ P+ K      RGIEVGHIF  G+KYS  M+       GK  
Sbjct: 391 RNVVAGDASPDGKGTLDIKRGIEVGHIFQLGSKYSEAMNCGVLSESGKHQ 440


>gi|193215696|ref|YP_001996895.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|238692696|sp|B3QUU7|SYT_CHLT3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193089173|gb|ACF14448.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 659

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 165/455 (36%), Gaps = 51/455 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+F  I +   RD      +L L   MI      G+  WLP G    + + + +++EQ R
Sbjct: 241 KHFSQIEEAKKRDHRKLGSELELF--MISPEVGSGLPMWLPKGAILRNELESFLKDEQRR 298

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML---RLADR--NDKAMIYGPTHEEVMTDIF 118
            G + +  P + + +L+  SG Y  Y           D    ++  +  P +      I+
Sbjct: 299 RGYLPVVTPHIGNIELYKTSGHYPYYSDSQFPPLTFTDELGKEEQYLLKPMNCPHHHQIY 358

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S  +SYR+LP    +    +R E      G++R R F   D++ +    +       K 
Sbjct: 359 SSKPRSYRDLPIRLTEFGTVYRYEQSGELNGLIRVRGFTQDDSHIY-CRQDQLVDEICKA 417

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F  LG   +  R                  D   T  +   + +      +  
Sbjct: 418 IDLTQFVFKTLGFAEVQTRLSLR--------------DPENTSKYSGNNEVWVQAEQDLK 463

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           D  D + LN  +    A +         +                 +G  +  GT    Y
Sbjct: 464 DAADKMQLNYFIGLGEASFYGPKIDFIVRDA---------------IGRKWQLGTVQVDY 508

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +P     T+ G+DG+ H  V +     G++     ++  +  G   +W   ++P ++ +
Sbjct: 509 VMPERFDLTYVGSDGQKHRPVVIHRAPFGSLERFIGILIENFAGNFPVW---LSPVQVMV 565

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I       RD    +  +L   G     D+ GE++G +   A++   P   +VG K +
Sbjct: 566 LPITDD---FRDYAHSVLQKLLDAGIRAEIDERGEKVGKKIRDAEIKKIPYMFVVGEKEM 622

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + + V ++    G +  M L+E I       S  +
Sbjct: 623 AAASVAVRRHKEGDKGTMPLQEAIRLLQTDISTKK 657


>gi|146306290|ref|YP_001186755.1| prolyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166980142|sp|A4XRQ7|SYP_PSEMY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145574491|gb|ABP84023.1| prolyl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 571

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAIQPAELWQESGRWVQYGPELLRVKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCNVFSRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAFSNVSDYAA 231



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           +      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 EDKHYFGVNWERDLPLPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G +GK   + MG YGIG  RVVAA IE +HD +GI+W D++APF I+L+ ++   
Sbjct: 424 NCQVLGENGKPVTLTMGCYGIGVSRVVAAAIEQNHDERGILWNDALAPFHIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +V+V  + +++  +
Sbjct: 484 EQVREATDKLYAELTAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRVVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + L E++ +   R S
Sbjct: 544 EYKSRAETEAQAVPLAEILPFLQARIS 570


>gi|329733112|gb|EGG69449.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 644

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|167553343|ref|ZP_02347092.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|238911308|ref|ZP_04655145.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|205322190|gb|EDZ10029.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 572

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|162139614|ref|YP_215228.2| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|114152248|sp|Q57T14|SYP_SALCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|322713265|gb|EFZ04836.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 572

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGKKSLIKTGDIVDYLVKAIK 571


>gi|194443070|ref|YP_002039482.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197250542|ref|YP_002145247.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|226701326|sp|B5F8V6|SYP_SALA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701335|sp|B4SV24|SYP_SALNS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194401733|gb|ACF61955.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197214245|gb|ACH51642.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 572

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|161504638|ref|YP_001571750.1| prolyl-tRNA synthetase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189083510|sp|A9MPG5|SYP_SALAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160865985|gb|ABX22608.1| hypothetical protein SARI_02759 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 572

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPIVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|257420184|ref|ZP_05597178.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257162012|gb|EEU91972.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 645

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVHNY 643


>gi|15924673|ref|NP_372207.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927261|ref|NP_374794.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|156980000|ref|YP_001442259.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006467|ref|ZP_05145068.2| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|54039693|sp|P67585|SYT_STAAN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|54042050|sp|P67584|SYT_STAAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225504|sp|A7X3A6|SYT_STAA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13701479|dbj|BAB42773.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247455|dbj|BAB57845.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722135|dbj|BAF78552.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu3]
          Length = 645

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|16128187|ref|NP_414736.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|89107075|ref|AP_000855.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|170079831|ref|YP_001729151.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899593|ref|YP_002925389.1| prolyl-tRNA synthetase [Escherichia coli BW2952]
 gi|34395980|sp|P16659|SYP_ECOLI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Global RNA
           synthesis factor; AltName: Full=Proline--tRNA ligase;
           Short=ProRS
 gi|226701282|sp|B1XD64|SYP_ECODH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511593|sp|C4ZRT7|SYP_ECOBW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1552770|gb|AAB08622.1| proline-tRNA ligase [Escherichia coli]
 gi|1786392|gb|AAC73305.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|85674379|dbj|BAA77870.2| prolyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|169887666|gb|ACB01373.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863283|gb|ACR65281.1| prolyl-tRNA synthetase [Escherichia coli BW2952]
 gi|260450602|gb|ACX41024.1| prolyl-tRNA synthetase [Escherichia coli DH1]
 gi|315134885|dbj|BAJ42044.1| prolyl-tRNA synthetase [Escherichia coli DH1]
          Length = 572

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  + + +  RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|323490461|ref|ZP_08095668.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323395865|gb|EGA88704.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 642

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 170/442 (38%), Gaps = 34/442 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ R
Sbjct: 232 KAHLEMLEEAKERDHRKIGKELNLFMN-SQKVGQGLPMWLPKGATIRRIIERYIVDKEER 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + S +L+  SG +D Y ++M  +   +++ ++  P +      IF+  I 
Sbjct: 291 LGYDHVYTPVMGSVELYKTSGHWDHYQEDMFPVMKMDNEELVLRPMNCPHHMMIFKQGIH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR +P    ++ L  R E+     G+ R R   + DA+ F + P+  K  + ++    +
Sbjct: 351 SYRQMPVRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHLF-VRPDQIKEEFKRVVNLIV 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +     R                  D  + + +   D M     +   +  D 
Sbjct: 410 EVYKDFNINDYSFRLSYR--------------DPEDKEKYFDDDAMWNRAQAMLKEAMDE 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++ I  +     A      + ++  +L + + +S   ++    F    ++      ++
Sbjct: 456 LDVDYI--EVEGEAAFYGPKVDVQVKTALGKEETLSTVQLD----FLLPERF----DLSY 505

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK H   +   G+ + M    A +   + G    W   +AP ++ LI +       
Sbjct: 506 IGEDGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVELIPVSL--DAH 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++  +L      V  D+  E++G +   A +   P  +++G K + D  V ++  
Sbjct: 561 SAYTKELQEKLQSHKIRVDIDERDEKLGYKIREAQMQKVPYMLVLGDKELEDGSVNVRKY 620

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                E M  E+ +        
Sbjct: 621 GEQKSESMPFEDFVKLVQSELR 642


>gi|154253109|ref|YP_001413933.1| threonyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|189083615|sp|A7HWJ3|SYT_PARL1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154157059|gb|ABS64276.1| threonyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 652

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 160/457 (35%), Gaps = 61/457 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +++E    AE   H+ + R      + + ++G   W P G +    +   +R   
Sbjct: 230 KAYLTMVEE----AERRDHRKIGREMDLFHLQEEAQGSVFWHPKGWRIWQALEQYVRRRI 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGP 108
           +  G +E+  P L  +  W +SG +  Y + M  + D                K M   P
Sbjct: 286 DAAGYVEVRTPQLLDSKFWEQSGHWGKYRENMFVVPDEVPSTDEDAPVLSGKAKLMAIKP 345

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      IF+  +KSYR+LP    +     R+E      G+MR R+    DA+ F  T 
Sbjct: 346 MNCPAHIQIFKQGVKSYRDLPLRMAEFGCCHRNEPHGALHGLMRVRQMTQDDAHIF-CTE 404

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  K            ++  +G     +R  + P     + E    A+    +   +   
Sbjct: 405 DQIKEETEAFVALLESVYEDMGFTGTKLRLATRPDVRAGTDETWDKAEKALEEALKALGK 464

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                P E   +   +                               +    R  ++G  
Sbjct: 465 EFDFAPGEGAFYGPKLEF---------------------------HLRDAIGRSWQLGT- 496

Query: 288 FYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 + LP  + A++ G DG  H  V +    +G++     ++  +++G+  +W   +
Sbjct: 497 --LQLDFVLPERLDASYIGEDGNKHRPVMLHRAILGSLERFIGILIENYEGRFPMW---L 551

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP +  +  I +         E++  +L   G     D   E+I  +     +   P   
Sbjct: 552 APVQAVVTTITSD---ADPYAEEMLQKLRDAGIRAELDLRNEKINYKVREHSVAKVPAIF 608

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           + G +   +  V I+   +  ++ M L+E I   +  
Sbjct: 609 VAGKREAEEGTVSIRRLGSQQQQTMKLDEAIKALAEE 645


>gi|168235024|ref|ZP_02660082.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735941|ref|YP_002113265.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204926680|ref|ZP_03217882.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|226701337|sp|B4TYF5|SYP_SALSV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194711443|gb|ACF90664.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291887|gb|EDY31237.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323345|gb|EDZ08540.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 572

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|256763421|ref|ZP_05504001.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256958077|ref|ZP_05562248.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|257079964|ref|ZP_05574325.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256684672|gb|EEU24367.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256948573|gb|EEU65205.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256987994|gb|EEU75296.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
          Length = 645

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVHNY 643


>gi|320084496|emb|CBY94289.1| Prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 572

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  I GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFILGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|148269334|ref|YP_001243794.1| threonyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166225512|sp|A5IJ45|SYT_THEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147734878|gb|ABQ46218.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermotoga
           petrophila RKU-1]
          Length = 640

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 166/446 (37%), Gaps = 47/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLM---LRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L  L+E    A+   H+ +   L   M+  +++ G+  +LP G   L+ +    RE   
Sbjct: 229 YLKFLEE----AQRRDHRKLGPHLELFMLNTEYAPGMPFFLPKGVVVLNELMRFSRELHR 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + +  LW  SG +D Y + M    +++++     P +      +++S  
Sbjct: 285 ERGYQEIFTPLIMNEQLWKISGHWDHYAENMY-FIEKDEERYAVKPMNCPGHILVYKSRT 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  F++     R E      G+MR R F   DA+ F  TP+  +     +    
Sbjct: 344 VSYRDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIF-CTPDQIEEEILGVLDLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+ + G     +   + P            A T                  E      
Sbjct: 403 NTIYGQFGFTYR-VELSTMPEDHMGDEAIWEKATTALKNALERAGLSYKVNEGEG----- 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + DS+    + +   ++               + T
Sbjct: 457 ---------------AFYGPKIDFHIRDSIGREWQCATIQLDFMMPEK--------FNVT 493

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D K+H  V +     G++     ++     G    W   +AP ++++I I    + 
Sbjct: 494 YIGPDNKEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTW---LAPIQVAVIPI---SEK 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ ++ 
Sbjct: 548 HNDGAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKISVRT 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     +D+ LE  +    +   + +
Sbjct: 608 RTGKEIKDVDLEHFVETLRNEVLSRK 633


>gi|104783084|ref|YP_609582.1| prolyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123380820|sp|Q1I6D7|SYP_PSEE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|95112071|emb|CAK16798.1| prolyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 571

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHDRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL   P++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLASSGEDDVIFSDSSDYAA 231



 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 DVVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTESEAQALPLNEVLTFLQARIR 570


>gi|157156008|ref|YP_001461365.1| prolyl-tRNA synthetase [Escherichia coli E24377A]
 gi|166980119|sp|A7ZHT6|SYP_ECO24 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157078038|gb|ABV17746.1| prolyl-tRNA synthetase [Escherichia coli E24377A]
          Length = 572

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRIGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|294084802|ref|YP_003551562.1| threonyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664377|gb|ADE39478.1| Threonyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 641

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 151/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      +L +    + + + G   W   G      + + +R  
Sbjct: 227 KELNAYLHMLEEAEKRDHRKLGKQLDMF--HLQEEAAGSVFWHQKGWFIYREIESYVRRR 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P L    LW ESG +D + + M      +++ +   P +      IFR 
Sbjct: 285 LEQAGYGEVKTPQLVDRTLWEESGHWDKFRENMFTAQSEDERTLALKPMNCPCHVQIFRQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            IKSYR+LP    +     R+E      G+MR R F   DA+ F  T +       +   
Sbjct: 345 GIKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRAFTQDDAHIF-CTEDQITEESVQFCA 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G   + ++    P            A++  T    +        P E   +
Sbjct: 404 LLQSIYADFGFTDVRVKFSDRPEVRAGDDATWDKAESALTDACSAAKLETTLNPGEGAFY 463

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              +                               +    R  + G        + LP  
Sbjct: 464 GPKLEF---------------------------VLRDAIGRDWQCGT---LQVDFVLPER 493

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + G DG  H  V +    +G+M     ++   + G+   W   +AP +I + +I  
Sbjct: 494 LDAEYVGEDGNRHRPVMLHRAILGSMERWIGILIEQYSGRMPNW---LAPVQIVVASIT- 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E++      +G  V  D   E+I  +     ++  P  + VG +      V
Sbjct: 550 --DSANDYAEQVARTAEAMGLRVERDFRNEKISYKVREHSVMKVPFILAVGGREAEAGTV 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  + ++E +      
Sbjct: 608 ALRRLGSNDQTVLDMKEALAMLRDE 632


>gi|228472826|ref|ZP_04057584.1| threonine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275877|gb|EEK14643.1| threonine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 649

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 89/452 (19%), Positives = 166/452 (36%), Gaps = 41/452 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q 
Sbjct: 227 LTEYLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +   +L+V SG ++ YGK+  +        +  +  P +     +I+ S
Sbjct: 286 QAGYEQVVTPHIGHKNLYVTSGHWEKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H  SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +  
Sbjct: 346 HPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTPEQLDAEFKHVID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG  +   +                      ++   + +       +     
Sbjct: 405 LVLYVFGSLGFDNFTAQVSLRD-------------PENLSKYIGTDENWAKAENAIINAA 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            +      I     A Y    D   +              R  ++G I      Y+LP  
Sbjct: 452 KEKNLTYVIETGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPER 498

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +KGAD + H  V +     G+M    A++     G   +W   + P +++++ I  
Sbjct: 499 FDLWYKGADNELHRPVMIHRAPFGSMERFVAILLEHTAGNLPLW---LVPEQVNILCI-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +       K+   L +       D+  E IG +   A+   FP  VIVG +   ++ +
Sbjct: 554 -SEKYEGYAHKVANLLQEADLRPHVDNRNETIGKKIREAETQKFPYMVIVGEEEEKNATL 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS-NNRP 447
            ++         M + + I       + N RP
Sbjct: 613 SVRRHGGEDLGSMKIADFITLIQEEINKNVRP 644


>gi|255974800|ref|ZP_05425386.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256616698|ref|ZP_05473544.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|257081588|ref|ZP_05575949.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257084237|ref|ZP_05578598.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257417026|ref|ZP_05594020.1| threonyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|255967672|gb|EET98294.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256596225|gb|EEU15401.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256989618|gb|EEU76920.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256992267|gb|EEU79569.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257158854|gb|EEU88814.1| threonyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|295113730|emb|CBL32367.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterococcus sp.
           7L76]
          Length = 645

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVHNY 643


>gi|168823087|ref|ZP_02835087.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205340609|gb|EDZ27373.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
          Length = 572

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|49475537|ref|YP_033578.1| threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|73919770|sp|Q6G3K1|SYT_BARHE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49238343|emb|CAF27567.1| Threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 658

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 156/449 (34%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        +   G+  W   G K   N+   +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMNLFHFQEEGPGMIFWHKKGWKMFQNLINYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +     E++ P +    LW  SG ++ Y + M +         N+      P +      
Sbjct: 289 DDHQYAEVNAPQVLDRSLWEISGHWEWYKENMFKAIPAAEDWDNENVYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPTRIAEFGVVHRYEPSGSLHGLMRVRCFTQDDAHIF-CTDEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G K I ++  + P     S      A+     V  +           
Sbjct: 408 NINDLILSTYADFGFKEISLKLSTRPEKRVGSDALWDHAENIMESVLKT----------- 456

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +  S   I         A      E         K    R  + G        ++
Sbjct: 457 ----IETKSAGQIKTSILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QLDFN 503

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP   +A +   D  K   V +     G+M     ++  +  G   +W    AP +I + 
Sbjct: 504 LPERFNAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFSGHMPLW---FAPEQIVVA 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  +K+ A+L  VG     D   E+I  +     L   P+ ++ G +   
Sbjct: 561 TITS---EANEYAKKLTAKLKSVGLSTTLDLRNEKINYKIREHSLQKVPVILVCGKRESE 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  +S+EEVI    + 
Sbjct: 618 TNSVNMRRLGSTEQIFLSVEEVIEQLKNE 646


>gi|226945724|ref|YP_002800797.1| prolyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259511575|sp|C1DRG4|SYP_AZOVD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226720651|gb|ACO79822.1| prolyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 571

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+LMLR GMI + + G+Y+WLPLG +AL    AI+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPLGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDKAGALEVLMPAIQPAELWQESGRWEQYGPELLRIRDRHAREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF LT E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLTQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+  P++A++G IGG  SHEF VLA +GE  +  S       
Sbjct: 181 YCNIFSRLGLEFRPVQADTGSIGGTGSHEFHVLAASGEDDIAFSDSSDYAA 231



 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 4/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P  +   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFGLNWERDLPLPQVADLRNVVEGDPSPDGQGSLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G +GK   + MG YGIG  RVVAA IE ++D +GI+WP ++APF+I+L+ +K   
Sbjct: 424 NCKVLGENGKPVTLIMGCYGIGVSRVVAAAIEQNYDERGILWPQALAPFQIALVPMKYES 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +++YA L   G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 AAVREATDRLYAELVAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSERGLAEGTL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
           E K R     + +   ++I +  +R 
Sbjct: 544 EYKGRRETEVQAIPAADLITFLGNRI 569


>gi|154706797|ref|YP_001424763.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|154356083|gb|ABS77545.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 660

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 159/454 (35%), Gaps = 55/454 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+L+ +          S G   W P G   +  +   IR
Sbjct: 235 KALKAYLYRLEE----AEKRDHRLLAKKMDLFHFQPESPGNVFWHPNGWSIILQMREYIR 290

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              ++ G  E+  P L  A LW +SG    +G ++  L     +  +  P        IF
Sbjct: 291 HITHKYGYQEVHTPQLIDASLWDKSGHLGKFGDDIFSLPLEPQQY-VIKPMSCPAHVQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP  + +     R+E      G+MR R F+  DA+ F  T +  +   +  
Sbjct: 350 NQGVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIF-CTEDQIQSEVSAF 408

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   +  +  + P     S E    A+    +    K      +P E  
Sbjct: 409 IDQLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGEGA 468

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
            +   I  +                                     +G I+  GT    +
Sbjct: 469 FYGPKIEFSLRDC---------------------------------LGRIWQCGTVQVDF 495

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           S+P  + A +   DG K   V +    +G+      ++     GK  +W   +AP ++ +
Sbjct: 496 SVPERLGAHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLW---LAPVQVVV 552

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +NI        D   +    L  +G     D   E+IG +     +   P  V++G + V
Sbjct: 553 MNIT---DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREV 609

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +D  + ++         ++LEE         S  
Sbjct: 610 ADKTLSVRALEDEASTTITLEEFARQLKAEISQR 643


>gi|298291991|ref|YP_003693930.1| threonyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928502|gb|ADH89311.1| threonyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 666

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 89/428 (20%), Positives = 150/428 (35%), Gaps = 44/428 (10%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R        +   G+  W P G     N+ A +R         E++ P 
Sbjct: 253 EAEKRDHRRLGREMDLFHFQEEGPGVVFWHPKGWNLFQNLVAYMRRRL-AADYSEVNAPQ 311

Query: 74  LQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +    LW  SG +  Y   M ++     A+ ND+     P +      IF+  +KSYR+L
Sbjct: 312 VLDKSLWETSGHWGWYKDNMFKVQPAGDAEDNDRVYALKPMNCPGHVQIFKHGLKSYRDL 371

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R E      G+MR R F   DA+ F  T E       K+    L  +  
Sbjct: 372 PMRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEEQMAAECLKINELILSTYAD 430

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + I ++  + P     S E    A+    +V                   +  S   
Sbjct: 431 FGFEEIVVKLSTRPEKRVGSDEVWDHAEDVMERVLTQ---------------IEAESGGK 475

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
           I         A      E         +    R  + G        ++LP    A +  A
Sbjct: 476 IKTGILPGEGAFYGPKFEYTL------RDAIGREWQCGTT---QVDFNLPERFGAFYVDA 526

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+    V +     G+M     ++   H G   +W   +AP +  +  I +        
Sbjct: 527 DGQKKTPVMIHRAICGSMERFTGILIEHHAGHFPLW---LAPVQAVVATITSDGD---PY 580

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E+I A   K+G  V  D   E+I  +     +   P  ++VG K  ++  V I+   + 
Sbjct: 581 AEEIAAAARKMGLRVELDLRNEKINYKVREHSVAKVPALIVVGRKEAAERTVSIRRLGSQ 640

Query: 425 IREDMSLE 432
            +  ++L+
Sbjct: 641 NQTTLTLD 648


>gi|224582089|ref|YP_002635887.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|254782914|sp|C0Q6L7|SYP_SALPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|224466616|gb|ACN44446.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 572

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGEGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGKKSLIKTGDIVDYLVKAIK 571


>gi|315026573|gb|EFT38505.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 660

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVRNY 658


>gi|16759234|ref|NP_454851.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16763631|ref|NP_459246.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140783|ref|NP_804125.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56412515|ref|YP_149590.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161612617|ref|YP_001586582.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167990131|ref|ZP_02571231.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230553|ref|ZP_02655611.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168245012|ref|ZP_02669944.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264654|ref|ZP_02686627.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168464192|ref|ZP_02698095.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194449602|ref|YP_002044232.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472823|ref|ZP_03078807.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197264294|ref|ZP_03164368.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361450|ref|YP_002141086.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242516|ref|YP_002214203.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200386929|ref|ZP_03213541.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205351579|ref|YP_002225380.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207855760|ref|YP_002242411.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213051828|ref|ZP_03344706.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213428490|ref|ZP_03361240.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213580835|ref|ZP_03362661.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213865222|ref|ZP_03387341.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|81821351|sp|Q5PD80|SYP_SALPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81832731|sp|Q7CR62|SYP_SALTY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81849080|sp|Q8XEY9|SYP_SALTI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083511|sp|A9N0U7|SYP_SALPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701327|sp|B5FJ42|SYP_SALDC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701328|sp|B5R434|SYP_SALEP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701329|sp|B5R5J8|SYP_SALG2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701334|sp|B4TK70|SYP_SALHS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701336|sp|B5BAQ2|SYP_SALPK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25293215|pir||AF0532 prolyl-tRNA synthetase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16418747|gb|AAL19205.1| proline tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501525|emb|CAD08702.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136407|gb|AAO67974.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56126772|gb|AAV76278.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161361981|gb|ABX65749.1| hypothetical protein SPAB_00308 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407906|gb|ACF68125.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194459187|gb|EDX48026.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195632930|gb|EDX51384.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197092926|emb|CAR58355.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197242549|gb|EDY25169.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197937032|gb|ACH74365.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199604027|gb|EDZ02572.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205271360|emb|CAR36153.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205331403|gb|EDZ18167.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335202|gb|EDZ21966.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336220|gb|EDZ22984.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205346928|gb|EDZ33559.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206707563|emb|CAR31837.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|267991932|gb|ACY86817.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156869|emb|CBW16345.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911213|dbj|BAJ35187.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225175|gb|EFX50235.1| Prolyl-tRNA synthetase ; Bacterial type [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128562|gb|ADX15992.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326621946|gb|EGE28291.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326626606|gb|EGE32949.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332987194|gb|AEF06177.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 572

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|213648168|ref|ZP_03378221.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 306

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231


>gi|152975545|ref|YP_001375062.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024297|gb|ABS22067.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 640

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 159/443 (35%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   R+     ++L L   M  + + G+  +LP GQ   + +   +RE Q   
Sbjct: 234 KYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEGFLREIQQAY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + +LW +SG +D Y   M   ++ + K+    P +      IF+  ++S
Sbjct: 292 DYQEVRTPLMMNQELWEKSGHWDHYKDNMY-FSEVDHKSFALKPMNCPGHMLIFKHKLRS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ + +T E  +     +      
Sbjct: 351 YRDLPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHIY-VTAEQIESEIQSVLKQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G +   +   + P       E    A+     V  S  +       +        
Sbjct: 410 VYRTFGFEY-EIELSTRPENSMGDDELWNQAEAALENVLKSLQYNYRINEGDG------- 461

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L  + +     ++    F    K+       + 
Sbjct: 462 -------------AFYGPKIDFHIKDALKRSHQCGTVQLD----FQMPEKF----DLHYI 500

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                K   V +    +G+     A++     G    W   +AP ++ +I +     V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSFDRFLAILIEHFGGAFPAW---LAPIQVKVIPVSNL--VHD 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +  +V   V  D   E++G +   A +   P  +++G K + ++ V ++   
Sbjct: 556 SYTKEIEDKFKQVDIRVERDIRNEKLGYKIRDAQIQKIPYVLVIGDKEMENASVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               E +SL E I        N 
Sbjct: 616 EENSEVVSLHEFIENLQIEIKNR 638


>gi|29377326|ref|NP_816480.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255971805|ref|ZP_05422391.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256854147|ref|ZP_05559512.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|73919789|sp|Q830D0|SYT_ENTFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29344793|gb|AAO82550.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255962823|gb|EET95299.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256711090|gb|EEU26133.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|323481721|gb|ADX81160.1| threonyl-tRNA synthetase [Enterococcus faecalis 62]
          Length = 645

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVHNY 643


>gi|256963904|ref|ZP_05568075.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256954400|gb|EEU71032.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
          Length = 645

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVHNY 643


>gi|195375658|ref|XP_002046617.1| GJ12980 [Drosophila virilis]
 gi|194153775|gb|EDW68959.1| GJ12980 [Drosophila virilis]
          Length = 464

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 219/460 (47%), Gaps = 40/460 (8%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P+L   P++A +        S KL++  G+I   S G Y  +P+ Q+ +D   
Sbjct: 3   KASRLFWPVLI-TPKNAVVKQTEQLSRSQKLLMELGLIKSGSNGTYQIMPIAQRVVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           ++++      G  ++S+P L  A LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  SLVQRNMQEAGGQKISLPVLTPAQLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATAAPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSKEAAECT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R F +L +  + + A +G +GG LSHE+  ++  GE  +            
Sbjct: 182 YATVSDAYERFFRQLEVPFVKVEAATGIMGGSLSHEYHYISPVGEDTLLNCSACGYA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                     SD        S    +    RG+EV H F  G K
Sbjct: 239 -------------------GNAEVLGSDAETASTCPSCQSTQLSRVRGVEVAHTFLLGDK 279

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   +QMG YG+G  RV+AA +E     + + WP  +AP+ + LI 
Sbjct: 280 YSKPLGATFLNKSGKPETLQMGCYGVGITRVIAAALEVLSTEQELRWPKLLAPYDVCLIG 339

Query: 354 IKAHDQVCRDACEKIYARLSKV-----GCDVFW-DDMGE-QIGSQFAVADLLGFPLQVIV 406
            K   +      E++   L +      G +    D+  E  IG +   A  LG PL ++V
Sbjct: 340 PKQGSKEQAPV-ERLENELLQQLTQICGAEQLLHDERKELTIGKRLLDAKRLGHPLTIVV 398

Query: 407 GSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFSNN 445
           G+K       +++   +G  + ++S  EV+   +    + 
Sbjct: 399 GAKAAQQEAPQLELHASGAEKMELSAAEVLRVVATHVQHK 438


>gi|257421590|ref|ZP_05598580.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|257163414|gb|EEU93374.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
          Length = 645

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVHNY 643


>gi|254369559|ref|ZP_04985570.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122513|gb|EDO66648.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 634

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 154/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +      P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELFPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+     M     +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVSVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|313885013|ref|ZP_07818765.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619704|gb|EFR31141.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 651

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 161/446 (36%), Gaps = 38/446 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD      +L L   MI  +   G+  WLP G      +   I +++   G  
Sbjct: 234 RREEAKERDHRKLGKELGLF--MISQEAGSGLPFWLPKGATIRRVIERYIMDKEIALGYE 291

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P +   DL+  SG +  Y  +M    D  D  M +  P +      I+++ I SYR
Sbjct: 292 HVYTPVMAKTDLYKTSGHWAHYKDDMFPPMDMGDGEMLVLRPMNCPHHMLIYKNEIHSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D++ F + P+  K  + ++      ++
Sbjct: 352 ELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDSHIF-VRPDQIKDEFKRVLNLIADVY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                  D  + + +     M     S   +  D +  
Sbjct: 411 EDFNITDYRFRLSYR--------------DPEDKEKYFDDYAMWEKAESMLKEAMDELG- 455

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + +   ++   + +S   ++    F    ++      T+ G 
Sbjct: 456 -LEYFEAIGEAAFYGPKLDVQFKTAIGLEETMSTIQLD----FLLPERF----DLTYVGE 506

Query: 306 DGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           DG++    V +    +  M    A +   + G    W   +AP +  L+ +    +   D
Sbjct: 507 DGQNTHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQAILLPVSP--EHHGD 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E+IY  L + G  V  D   E++G +   A     P Q+++G + V D  V I+    
Sbjct: 562 RVEEIYHALQEAGFRVEMDLRNEKLGYKIREAQTSKIPYQIVIGDQEVEDGTVNIRRYGA 621

Query: 424 GIREDMSLEEVINYASHRFS-NNRPV 448
                +SLE+ I   +   +  +RP 
Sbjct: 622 QDSNSVSLEDFIALLNEDVARKSRPA 647


>gi|332653846|ref|ZP_08419590.1| threonine--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516932|gb|EGJ46537.1| threonine--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 589

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 152/442 (34%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L   M+     G   +LP G    + +    R+   + G
Sbjct: 182 YLQRIEEAKKRDHRKLGKELGLF--MLRDEGPGFPFFLPKGMTLKNTLLDYWRQIHKKYG 239

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y + M      + +     P +      ++ S   SY
Sbjct: 240 YVEISTPIILNRQLWERSGHWDHYKQNMYT-TVIDGEDFAIKPMNCPGGMLVYASEPHSY 298

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +I L  R EL     G+ R R F   DA+ F +T E  K    +    +  +
Sbjct: 299 RELPLRVGEIGLVHRHELSGALHGLFRVRCFSQDDAHVF-MTREQMKDVIQETVRLFDEV 357

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL    +   + P     + E                   +           D+  
Sbjct: 358 YSTFGLSY-TIELSTMPEDHIGTVE-----------------EWEHNQDILKNAITDMGK 399

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H                R  + G I    ++        + G
Sbjct: 400 EFVINEGDGAFYGPKLDFHLADSLG----------RTWQCGTI-QLDSQLPERFELEYTG 448

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +    +G++     VI     G    W   +AP ++ ++ +         
Sbjct: 449 EDGQKHRPVMIHRVVLGSIERFIGVITEHFAGAFPAW---LAPVQVKILPVTDR---AAA 502

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L + G  V  D   E+IG +   A +   P  ++VG + + ++ V ++ R  
Sbjct: 503 YADQLSKQLDEAGYRVETDHRNEKIGKKIREATMEKIPYMIVVGDRDMENNTVSVRLRTG 562

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MSL +          + 
Sbjct: 563 EDLGAMSLADFTAKLKAVVDSK 584


>gi|322616066|gb|EFY12983.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620849|gb|EFY17709.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623800|gb|EFY20637.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627248|gb|EFY24039.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630555|gb|EFY27319.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638227|gb|EFY34928.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322645504|gb|EFY42031.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648203|gb|EFY44670.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322657523|gb|EFY53795.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663843|gb|EFY60043.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666676|gb|EFY62854.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672166|gb|EFY68278.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676523|gb|EFY72594.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679385|gb|EFY75430.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|323193468|gb|EFZ78676.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197510|gb|EFZ82645.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201221|gb|EFZ86290.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209616|gb|EFZ94549.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212132|gb|EFZ96956.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216437|gb|EGA01163.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223373|gb|EGA07708.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225934|gb|EGA10154.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228525|gb|EGA12654.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236862|gb|EGA20938.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239638|gb|EGA23685.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242315|gb|EGA26344.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249977|gb|EGA33873.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252407|gb|EGA36258.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255690|gb|EGA39443.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262873|gb|EGA46423.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265359|gb|EGA48855.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271854|gb|EGA55272.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 572

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|315171869|gb|EFU15886.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1342]
          Length = 660

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|313888403|ref|ZP_07822071.1| threonine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845600|gb|EFR32993.1| threonine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 636

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 156/449 (34%), Gaps = 47/449 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y     +   RD      +L L +  +H+   G   + P G    +N+    R   
Sbjct: 226 QLEEYITRREEAEKRDHRKLGKELDLFS--MHEEGPGFPFFHPNGMILRNNLLNWWRGVL 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P + +  LW  SG +D Y   M      +D      P +      ++ S+
Sbjct: 284 DENGYGEILTPIILNEALWHRSGHWDHYKDNMY-FTKIDDGDYAVKPMNCPGSILVYNSN 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP    +  +  R EL     G+ R R F   DA+ + L     K    KM   
Sbjct: 343 KHSYRDLPIRLAEYGIVHRHELSGALHGLFRVRTFTQDDAHVYCL-FSQVKDEVFKMIDL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P       E   LA+    +    K+              
Sbjct: 402 ADYLYSTFGFKY-SIELSTRPDDYMGELEAWNLAEKSLKEALEEKNLP------------ 448

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLP 297
                 +I E   A Y    D H E              R  + G I   F     +   
Sbjct: 449 -----YTINEGDGAFYGPKIDFHLEDAIG----------RTWQCGTIQLDFQLPENF--- 490

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+   +G+    V +    +G++     ++     GK  +W   ++P ++ +I +  
Sbjct: 491 -DLTYVDENGERQRPVMLHRALLGSVERFMGILIEHFAGKFPLW---LSPVQVEVIPV-- 544

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  E I  +L   G  V  D   E++G +   A +      +++G K  +  K+
Sbjct: 545 -SDKFKDFAESIADKLHAAGLRVHLDGRAEKVGYKIREAQVKKINYMLVIGEKEETSGKL 603

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R     +D+ ++E I        N 
Sbjct: 604 SVRKRNGEEVQDVDVDEFIASLKEEIKNK 632


>gi|21283355|ref|NP_646443.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483925|ref|YP_041149.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486509|ref|YP_043730.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650554|ref|YP_186567.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161367|ref|YP_494324.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|148268163|ref|YP_001247106.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394230|ref|YP_001316905.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221788|ref|YP_001332610.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509896|ref|YP_001575555.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142567|ref|ZP_03567060.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317174|ref|ZP_04840387.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732334|ref|ZP_04866499.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734533|ref|ZP_04868698.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257425798|ref|ZP_05602222.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428464|ref|ZP_05604862.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431098|ref|ZP_05607475.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433781|ref|ZP_05610139.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436697|ref|ZP_05612741.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257794068|ref|ZP_05643047.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258415772|ref|ZP_05682043.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258421991|ref|ZP_05684911.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258424099|ref|ZP_05686981.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|258438251|ref|ZP_05689535.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443709|ref|ZP_05692048.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258445920|ref|ZP_05694096.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448399|ref|ZP_05696516.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258451803|ref|ZP_05699825.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258454120|ref|ZP_05702091.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|269203301|ref|YP_003282570.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893178|ref|ZP_06301412.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904254|ref|ZP_06312142.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282908994|ref|ZP_06316812.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911310|ref|ZP_06319112.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914479|ref|ZP_06322265.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282919448|ref|ZP_06327183.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920223|ref|ZP_06327948.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924825|ref|ZP_06332491.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282927813|ref|ZP_06335424.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283958434|ref|ZP_06375885.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024731|ref|ZP_06379129.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503557|ref|ZP_06667404.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510572|ref|ZP_06669277.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293537114|ref|ZP_06671794.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848704|ref|ZP_06789450.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295405993|ref|ZP_06815801.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428254|ref|ZP_06820883.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296274890|ref|ZP_06857397.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207604|ref|ZP_06924039.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245081|ref|ZP_06928958.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297590783|ref|ZP_06949421.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911686|ref|ZP_07129130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380726|ref|ZP_07363395.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|38258392|sp|Q8NW68|SYT_STAAW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749381|sp|Q6G8P3|SYT_STAAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749410|sp|Q6GG23|SYT_STAAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71153575|sp|Q5HF90|SYT_STAAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123735974|sp|Q2FG54|SYT_STAA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|172048941|sp|A6QHL6|SYT_STAAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083625|sp|A6U2F0|SYT_STAA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083626|sp|A5ITK7|SYT_STAA9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083627|sp|A8Z2J8|SYT_STAAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|38492559|pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492560|pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492561|pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|38492562|pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|21204795|dbj|BAB95491.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242054|emb|CAG40753.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244952|emb|CAG43413.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284740|gb|AAW36834.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127341|gb|ABD21855.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|147741232|gb|ABQ49530.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946682|gb|ABR52618.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374588|dbj|BAF67848.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368705|gb|ABX29676.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723934|gb|EES92663.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727474|gb|EES96203.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271492|gb|EEV03638.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275305|gb|EEV06792.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278046|gb|EEV08694.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281874|gb|EEV12011.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284048|gb|EEV14171.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257788040|gb|EEV26380.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257839365|gb|EEV63838.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257842035|gb|EEV66464.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257845720|gb|EEV69752.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257848295|gb|EEV72286.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851115|gb|EEV75058.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257855162|gb|EEV78101.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858367|gb|EEV81252.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257860515|gb|EEV83341.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257863572|gb|EEV86329.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|262075591|gb|ACY11564.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941163|emb|CBI49550.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313191|gb|EFB43587.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317258|gb|EFB47632.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282321660|gb|EFB51985.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325005|gb|EFB55315.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327258|gb|EFB57553.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282590323|gb|EFB95402.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594571|gb|EFB99556.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595872|gb|EFC00836.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764496|gb|EFC04622.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283790583|gb|EFC29400.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817366|gb|ADC37853.1| Threonyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290919959|gb|EFD97027.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095223|gb|EFE25488.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466463|gb|EFF08984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824730|gb|EFG41153.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968990|gb|EFG45011.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295127654|gb|EFG57291.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887621|gb|EFH26519.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178161|gb|EFH37409.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297575669|gb|EFH94385.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300887107|gb|EFK82308.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333348|gb|ADL23541.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751509|gb|ADL65686.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340725|gb|EFM06656.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312437859|gb|ADQ76930.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830061|emb|CBX34903.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130684|gb|EFT86670.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195587|gb|EFU25974.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198621|gb|EFU28949.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140439|gb|EFW32293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143977|gb|EFW35746.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314355|gb|AEB88768.1| Threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727674|gb|EGG64130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 645

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|256960954|ref|ZP_05565125.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256951450|gb|EEU68082.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
          Length = 645

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVHNY 643


>gi|88195489|ref|YP_500293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|123003455|sp|Q2FXP7|SYT_STAA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87203047|gb|ABD30857.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|329728437|gb|EGG64874.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 645

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|150396275|ref|YP_001326742.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166225503|sp|A6U8C7|SYT_SINMW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150027790|gb|ABR59907.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 660

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 153/447 (34%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +   ++ A +R     
Sbjct: 234 YLHVL----AEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLEG 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 290 -DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G K I ++  + P     S E    A+   T+V  +             
Sbjct: 408 NDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLKT------------- 454

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E         K    R  + G        ++LP
Sbjct: 455 --IEAQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNLP 503

Query: 298 --MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +      K   V +     G+M     ++  +  G   +W   ++P ++ +  I
Sbjct: 504 ERFGAFYIDSESEKRQPVMIHRAICGSMERFLGILLENFAGHMPLW---ISPLQVVVATI 560

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++  RL   G  V  D   E+I  +     +   P+ V+ G +   + 
Sbjct: 561 TS---EADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCGKREAEER 617

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V I+   +  +  MSL+E +   S  
Sbjct: 618 SVNIRRLGSQAQTAMSLDEAVASLSAE 644


>gi|194749304|ref|XP_001957079.1| GF10245 [Drosophila ananassae]
 gi|190624361|gb|EDV39885.1| GF10245 [Drosophila ananassae]
          Length = 458

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 224/464 (48%), Gaps = 44/464 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G+I   S G Y  +P+ Q++LD + 
Sbjct: 3   KASRLFCPALI-TPKNAVVKQTEQLSRSQKLLTDLGLIKSGSNGTYQIMPIAQRSLDKLI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L  + LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQLAGGQKISLPILTPSALWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAI 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E ++ S
Sbjct: 122 TAMLATTSPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYSFDVSEETARES 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG LSHE+  ++  GE  +            
Sbjct: 182 YSAVSEAYDRLFQQLEVPFVKVNAATGMMGGSLSHEYHYVSTVGEDSL------------ 229

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                         +          +  +   +   S   +     RG+E+ H F  G K
Sbjct: 230 --------------VQCTSCGFAGNSEVLTTPENCPSCQSSNLNEVRGVEIAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   V MG YGIG  RV+AA +E     + + WP  +APF + LI 
Sbjct: 276 YSTPLGATFLNTSGKPQSVIMGCYGIGITRVIAAALEVFSSEQELQWPKLLAPFDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +  + A       L+ VG      ++  DD  +  IG +   A  LG PL ++VG
Sbjct: 336 PKQGSKEQQPAEVIENELLNSVGQLCGPQELLHDDRKDLTIGKRLLEAKRLGHPLTIVVG 395

Query: 408 SKFVSDS--KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            K +     K+E+     G + ++ L E +   +    + + +L
Sbjct: 396 GKAIQQDSPKLEVHF-NGGDKLELDLSETLKLVAEHSRHKKDLL 438


>gi|163868456|ref|YP_001609665.1| threonyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|189083598|sp|A9IVB0|SYT_BART1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161018112|emb|CAK01670.1| Threonyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 658

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 158/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        +   G+  W   G K   N+   +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGMIFWHQKGWKMFQNLINYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +     E++ P +    LW  SG +  Y + M +         ++      P +      
Sbjct: 289 DDHQYAEVNAPQVLDRSLWEISGHWGWYKENMFKAIPAAEDLDHEHIYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIF-CTDEQLAAECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G K I ++  + P     S      A++           M+  + + 
Sbjct: 408 SINDLILSTYADFGFKEISLKLSTRPEKRVGSDALWDHAES----------IMESVLKTI 457

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            T F        I         A      E         K    R  + G        ++
Sbjct: 458 ETKFA-----GQIKTSILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QLDFN 503

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +     G+M     ++  +  G   +W   +AP +I + 
Sbjct: 504 LPERFGAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLW---LAPEQIVVA 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  +KI ARL  VG     D   E+I  +     L   P+ ++ G +   
Sbjct: 561 TITS---EANEYAQKITARLKAVGLSATTDLRNEKINYKIREHSLQKVPVILVCGKREAE 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  +S+E+ I   S+ 
Sbjct: 618 TNSVNMRRLGSPNQTLLSVEDAIKQLSNE 646


>gi|257091083|ref|ZP_05585444.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|256999895|gb|EEU86415.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
          Length = 645

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 166/446 (37%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++ R
Sbjct: 229 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIR 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 407 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 503 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 558 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 618 RYGSKETSVEDLSIFIDSMAAEVHNY 643


>gi|172036410|ref|YP_001802911.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171697864|gb|ACB50845.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 666

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 40/445 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I +    G+  W P G      +    R      
Sbjct: 258 YLTQKEEAQRRDHRKLGQQLKLFS--IQEDAGGGLVFWHPRGAMMRYLIEDYWRNAHLED 315

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG +D Y + M        +     P +       ++  + S
Sbjct: 316 GYQFLYTPHVANLDLWKTSGHWDFYRENMFEAMAVEHQTYQIKPMNCPFHVLTYKDDLHS 375

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F L PE        +     +
Sbjct: 376 YREFPLKWAELGTVYRYEKSGVLHGLMRVRGFTQDDAHIFCL-PEQIADEILGVLNLTEK 434

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P     S +   LA     +   +K +                
Sbjct: 435 ILSDFGFTDYEVNLSTRPEKSVGSDQVWQLATEALIKALNNKQWNYLEDRGGG------- 487

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++      FG +Y         
Sbjct: 488 -------------AFYGPKIDIKIKDAIGRLWQCSTIQVDFNLPERFGMEYVAA------ 528

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +   + +     G++     ++  ++ G   +W   +AP ++ L+ +       +
Sbjct: 529 --DGSRQQPIMIHRAIFGSLERFFGILIENYAGDFPLW---LAPIQLRLLPV---SDEQQ 580

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + +  RL K G  V  D  GE++G Q  +++L   P+  IVG + V    + I+ R 
Sbjct: 581 DYAKTVAIRLKKAGYRVEVDTSGERLGKQIRLSELEKIPVVAIVGKREVESQTLSIRTRQ 640

Query: 423 TGIREDMSLEEVINYASHRFSNNRP 447
            G    +++ ++        +N + 
Sbjct: 641 GGDLGTITVADLRERFKIAITNKKA 665


>gi|114799933|ref|YP_761871.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123027650|sp|Q0BXC2|SYT_HYPNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114740107|gb|ABI78232.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 657

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 156/452 (34%), Gaps = 56/452 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L        ++G   W P G      + A IR +Q+  G 
Sbjct: 234 LTRLEEAEKRDHRKLGAQLDLF--HFQPEAQGSVFWHPKGFMIWRELEAYIRRQQDADGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
           +E+  P L ++  W +SG +  + + M  + D                + M   P +   
Sbjct: 292 VEVKTPQLLNSVFWEKSGHWSKFRENMFVVPDEIPSTESDAPILSGEGELMALKPMNCPA 351

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IF++  +SYR+LP    +     R+E      G+MR R+    DA+ F    + +  
Sbjct: 352 HVQIFKNAQRSYRDLPIRMAEFGCCHRNEAHGALHGLMRVRQMTQDDAHIFCREDQIADE 411

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +  +    +  ++   GL  I  +  + P     + E    A+        +        
Sbjct: 412 TL-RFLKLFETVYGDFGLSEISYKLATRPEMRAGTDETWDRAEKALADALTAAGMTFSIA 470

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E   +   +  +                                 R  + G    F  
Sbjct: 471 EGEGAFYGPKLEFHLTD---------------------------AIGRTWQCGT---FQL 500

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            Y LP  + A + G+DG K   V +     G       ++  ++ G   +W   ++P ++
Sbjct: 501 DYVLPERLDAEYTGSDGAKHRPVMLHRAVFGTFERFMGILIENYAGSFPLW---MSPVQV 557

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  I        D  E+  A L K G  V  D   E I  +     +   P+  +VG++
Sbjct: 558 VVAAIT---DAAGDYAEEAAAALRKAGLRVEVDKRNETINYKVREHSVQKVPVIAVVGAR 614

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              D K+ ++   +  ++ +SL+E +   +  
Sbjct: 615 EAEDRKLALRRLGSNGQQIISLDEALVALADE 646


>gi|115315107|ref|YP_763830.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|122324891|sp|Q0BL41|SYT_FRATO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115130006|gb|ABI83193.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 634

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 154/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +      P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQILKNALDANNVSYELFPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+     M     +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVSVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|282906079|ref|ZP_06313934.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282331371|gb|EFB60885.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 645

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|295098681|emb|CBK87771.1| prolyl-tRNA synthetase, family II [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 572

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 366 DGKHFFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLMIKRGIEVGHIFQLGDKYSRAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A  +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 NAAVQGEDGRNQVLTMGCYGIGVTRVVAAAIEQNYDERGIVWPDNIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA LS  G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SYRVQELAEKLYAELSAKGIDVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y      
Sbjct: 546 YKYRRNGEKQMIKTGDILDYLVKAIK 571


>gi|89256700|ref|YP_514062.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|156502860|ref|YP_001428925.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010452|ref|ZP_02275383.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368007|ref|ZP_04984027.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|290954131|ref|ZP_06558752.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312449|ref|ZP_06803221.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|122999730|sp|Q2A2J0|SYT_FRATH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223341|sp|A7NDB6|SYT_FRATF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89144531|emb|CAJ79846.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253817|gb|EBA52911.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253463|gb|ABU61969.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 634

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 154/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +      P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQILKNALDANNVSYELFPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+     M     +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVSVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+++   +   +    
Sbjct: 608 KHSGEDLGQMSVDDFCAFLDKQIQAK 633


>gi|110633361|ref|YP_673569.1| threonyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123058100|sp|Q11JM1|SYT_MESSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110284345|gb|ABG62404.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chelativorans
           sp. BNC1]
          Length = 656

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 148/447 (33%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R        +   G+  W   G +   N+ + +R   + 
Sbjct: 235 YLQMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWRMFQNLVSYMRRRLDG 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M ++        + +     P +      IF
Sbjct: 291 V-YQEVNAPQVLDHSLWQTSGHWGWYKENMFKVECADEEAEDKRTFALKPMNCPGHVQIF 349

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T +       K+
Sbjct: 350 KHGLKSYRDLPIRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTEDQLAEECLKI 408

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G + I +   + P     S      A+                +     
Sbjct: 409 NDLILSTYADFGFEEIQVFFSTRPEKRVGSDALWDHAE--------------EIMGGVLE 454

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +               A      +  L D++        R  + G        ++LP
Sbjct: 455 QIAERSGGRIKTAINPGDGAFYGPKFDYVLKDAIG-------RQWQCGTT---QVDFNLP 504

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +   D  K   V +     G+M     ++  ++ G   +W    AP ++ +  I
Sbjct: 505 ERFGAFYIDKDSEKKQPVMIHRAICGSMERFLGILIENYAGHFPLW---FAPLQVVVATI 561

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++  +L   G     D   E+I  +     L   P+ ++ G +   + 
Sbjct: 562 TSD---ADDYARQVTQQLKAAGLTAEADLRNEKINYKVREHSLAKVPVILVCGKREAEEG 618

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V I+   +  +  + L E I      
Sbjct: 619 SVNIRRLGSRDQASLLLAEAIAQLIDE 645


>gi|315033108|gb|EFT45040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0017]
          Length = 672

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 256 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 314

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 315 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 374

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 375 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 433

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 434 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 479

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 480 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 529

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 530 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 584

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 585 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 644

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 645 RYGSKETSVEDLSIFIDSMAAEVHNY 670


>gi|294779531|ref|ZP_06744926.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300861074|ref|ZP_07107161.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307268336|ref|ZP_07549717.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307276154|ref|ZP_07557285.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|294453410|gb|EFG21817.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300850113|gb|EFK77863.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306507148|gb|EFM76287.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306515362|gb|EFM83896.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|315036305|gb|EFT48237.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0027]
          Length = 660

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|317484633|ref|ZP_07943536.1| prolyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316924107|gb|EFV45290.1| prolyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 574

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 126/268 (47%), Positives = 168/268 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++++P L+E P DAE+ SHKL++R GMI + + GIY+WLPLG + L+    I+REE
Sbjct: 1   MRWSQWYIPTLKEAPGDAEVISHKLLIRAGMIRKLTSGIYTWLPLGLRTLNKAANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +PT+Q ADLW ESGR++ YGKE+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAQEILMPTVQPADLWRESGRWEHYGKELLRFKDRHERDYCLGPTHEEVVTDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REFLMKDAYSFD    G+  SY KMF +
Sbjct: 121 EVRSYRQLPMNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDRDDAGADISYKKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+ L+  P+ A+SG IGG+ SHEF+VLA+TGE  +                   
Sbjct: 181 YKKIFSRMALQFRPVEADSGSIGGNFSHEFMVLAETGEDTIAYCTGCDWSANIERAAVLP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF 268
              +                    E   
Sbjct: 241 PAKACEETCSAIEEVTTPDQHTIEEVCG 268



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/171 (39%), Positives = 103/171 (60%), Gaps = 2/171 (1%)

Query: 268 FDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            D  P   +    A+GIEVGH+F  GTKYS  ++A +   +GK+  + MG YGIG  RVV
Sbjct: 389 GDVCPRCGKPVAFAKGIEVGHVFKLGTKYSTALNAIYLDENGKEQTIIMGCYGIGVSRVV 448

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA IE ++DG GI +P  +APF + L+N+   +       +++Y  L+ +G DV  DD  
Sbjct: 449 AACIEQNNDGDGIAFPPPLAPFDLELLNLDPKNADTAAKADELYDLLTGMGLDVLLDDRE 508

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E+ G +F  ADL+G P+QV+VG K ++   VE+K+R TG + ++ +E    
Sbjct: 509 ERPGVKFKDADLVGLPMQVVVGGKGLARGIVEVKNRKTGEKGELPVEGFAE 559


>gi|281411969|ref|YP_003346048.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281373072|gb|ADA66634.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 640

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 166/446 (37%), Gaps = 47/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLM---LRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L  L+E    A+   H+ +   L   M+  +++ G+  +LP G   L+ +    RE   
Sbjct: 229 YLKFLEE----AQRRDHRKLGPHLELFMLNTEYAPGMPFFLPKGVVVLNELMRFSRELHR 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + +  LW  SG +D Y + M    +++++     P +      +++S  
Sbjct: 285 ERGYQEIFTPLIMNEQLWKISGHWDHYAENMY-FIEKDEERYAVKPMNCPGHILVYKSRT 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  F++     R E      G+MR R F   DA+ F  TP+  +     +    
Sbjct: 344 VSYRDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIF-CTPDQIEEEILGVLDLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+ + G     +   + P            A T                  E      
Sbjct: 403 NTIYGQFGFTYR-VELSTMPEDHMGDEAIWEKATTALKNALERAGLSYKVNEGEG----- 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + DS+    + +   ++               + T
Sbjct: 457 ---------------AFYGPKIDFHIRDSIGREWQCATIQLDFMMPEK--------FNVT 493

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D K+H  V +     G++     ++     G    W   +AP ++++I I    + 
Sbjct: 494 YIGPDNKEHKAVMIHRAIYGSLERFFGILIEHFAGAFPTW---LAPIQVAVIPI---SEK 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ ++ 
Sbjct: 548 HNDGAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKISVRT 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     +D+ LE  +    +   + +
Sbjct: 608 RTGKEIKDVDLEHFVETLRNEVLSRK 633


>gi|295135444|ref|YP_003586120.1| threonyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294983459|gb|ADF53924.1| threonyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 648

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 160/440 (36%), Gaps = 46/440 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 238 AKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVSP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG++  +        +  +  P +     +++ S   SYR+LP 
Sbjct: 297 HIGHKELYVTSGHYAKYGEDSFQPIKTPHEGEEFLLKPMNCPHHCEMYNSQSWSYRDLPK 356

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     + K+    L +F  LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQLDEEFKKVIDLTLYVFDSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                  D    + +   D +     +   +      LN ++
Sbjct: 416 FENFTAQVSLR--------------DPENKEKYIGSDDVWEKAENAIINAAKEKGLNYVI 461

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKG 304
                          E    +    K        +G  +  GT    Y+LP     T+KG
Sbjct: 462 ---------------ETGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFDLTYKG 506

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +D + H  V +     G+M    A++     G   +W   + P +  ++++    +    
Sbjct: 507 SDNESHRPVMIHRAPFGSMERFIAILLEHTAGNFPLW---LMPEQAIILSL---SEKYEK 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+ + L         D+  E IG +   A++  FP  +IVG +   D  V ++    
Sbjct: 561 YSQKVLSLLENHEIRAVLDNRNETIGKKIREAEVQKFPYMLIVGEQEAKDGTVSVRKHGE 620

Query: 424 GIREDMSLEEVINYASHRFS 443
           G    M +EE      +   
Sbjct: 621 GDIGTMPVEEFAQIIKNEIE 640


>gi|121533721|ref|ZP_01665548.1| prolyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121307712|gb|EAX48627.1| prolyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 567

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 117/249 (46%), Positives = 161/249 (64%), Gaps = 1/249 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L+E P +AE+ SH+LMLR GMI + + GIY++LPL  + L  +  IIREE
Sbjct: 1   MRASNLYAPTLRETPAEAEVISHQLMLRAGMIRKAAGGIYTYLPLAWRVLKKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ++GR+D YG EM RL DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAKGGQELLMPIVQPAEIWKKTGRWDVYGDEMFRLKDRHQRDFCLGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ K+RDE+RPRFG+MR REF+MKD YSFD   EG   SYNKM+ +
Sbjct: 121 EVRSYRQLPLLLYQIQNKYRDEIRPRFGLMRGREFIMKDLYSFDRDEEGLNESYNKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F R GL   P+ A+SG IGG  SHEF+VLA++GE  +       D+    E  +  
Sbjct: 181 YTRVFTRCGLTFRPVEADSGAIGGSGSHEFMVLAESGEAAIVYC-TTCDYAANVEKAELK 239

Query: 241 DIISLNSIV 249
            I ++    
Sbjct: 240 PIHAMEEEQ 248



 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 2/177 (1%)

Query: 269 DSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P       +ARGIEVG +F   TKYS  + AT+   +G++  + MG YGIG  R +A
Sbjct: 389 DPCPRCGAPVKTARGIEVGQVFKLYTKYSNALGATYLDENGQERPIVMGCYGIGVTRTMA 448

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE +HD  GIIWP  +APF + +I + A ++      E++Y  L+K G +   DD  E
Sbjct: 449 AAIEQNHDENGIIWPVPIAPFHVVVIPVNAKEEAQMSLAEEVYTELNKAGVEAILDDRNE 508

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + G +F  ADL+G+PL+V +G K +S+ +VE+K R TG          +       +
Sbjct: 509 RPGVKFKDADLIGYPLRVTIGPKALSEGRVEVKVRRTGEIIYFDKANYVREVQALLA 565


>gi|227519418|ref|ZP_03949467.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|307280591|ref|ZP_07561639.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|227073125|gb|EEI11088.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|306503957|gb|EFM73174.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|315145737|gb|EFT89753.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315151718|gb|EFT95734.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315173904|gb|EFU17921.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 660

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|282916943|ref|ZP_06324701.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770747|ref|ZP_06343639.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319430|gb|EFB49782.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460894|gb|EFC07984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 645

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 169/446 (37%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++   G +    R                  D  + + +   D M     +   +  D
Sbjct: 407 IDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKEAAD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 ELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----DLT 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++ 
Sbjct: 558 HYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQ 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|237729500|ref|ZP_04559981.1| prolyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226909229|gb|EEH95147.1| prolyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 590

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D++ + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVLMPVVQPSELWEESGRWEQYGPELLRIADRGDRSFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 249



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M
Sbjct: 384 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLMIKRGIEVGHIFQLGTKYSEAM 443

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 444 KAAVQGEDGRNQTLTMGCYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHK 503

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 504 SYRVQELAEKLYAELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 563

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +   +++++      
Sbjct: 564 YKYRRNGEKELIKTGDIVDFLVKAIK 589


>gi|262044730|ref|ZP_06017778.1| proline-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037920|gb|EEW39143.1| proline-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 572

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P D+E+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADSEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA LS  G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SYRVQELAEKLYAELSAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y      
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKAIK 571


>gi|327536012|gb|AEA94846.1| threonine--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 660

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|315158985|gb|EFU03002.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0312]
          Length = 660

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|315148859|gb|EFT92875.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4244]
          Length = 660

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|307272094|ref|ZP_07553357.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306511210|gb|EFM80217.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
          Length = 660

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|227554282|ref|ZP_03984329.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229544818|ref|ZP_04433543.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|307289786|ref|ZP_07569723.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|227176572|gb|EEI57544.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229310090|gb|EEN76077.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|306499171|gb|EFM68649.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315030800|gb|EFT42732.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4000]
 gi|315575247|gb|EFU87438.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315582393|gb|EFU94584.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 660

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|150389418|ref|YP_001319467.1| threonyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149949280|gb|ABR47808.1| threonyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 636

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 159/442 (35%), Gaps = 47/442 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L +  +++   G   + P G    + +    R E  + G  E
Sbjct: 236 RLEEAKKRDHRKIGKELDLFS--LNEEGPGFPFFHPNGMIVRNELENFWRREHTKRGYEE 293

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +  LW +SG +D Y + M    + +D      P +      +++  + SYR+L
Sbjct: 294 IKTPIILNEQLWKQSGHWDHYQENMY-FTNIDDANYAVKPMNCPGSILMYKRKMHSYRDL 352

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++ L  R EL     G+MR R F   DA+ F L PE  K     +       +  
Sbjct: 353 PIRMGELGLVHRHELSGALHGLMRVRCFTQDDAHIFML-PEQIKDEILGVMNFVDYFYKV 411

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G K   +   + P     + E   LA                 I S     ++      
Sbjct: 412 FGFKY-HIELSTRPKDSMGTDEEWDLA-----------------INSLREALEENNVKYK 453

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKG 304
           + E   A Y    D H E              R  + G I   F    ++       + G
Sbjct: 454 LNEGDGAFYGPKIDFHLEDAIG----------RTWQCGTIQLDFQMPQRF----DINYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H  + +     G++     ++   + GK   W   +AP +  ++ I  +     +
Sbjct: 500 ADGEKHRPIMIHRVIFGSIERFIGILIEHYAGKFPAW---LAPVQAKILPITDN---HLE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+  ++ +    V  D+  E+IG +   A L   P  +++G K V    V ++ R  
Sbjct: 554 YARKLQQQMLEKDIRVVIDERSEKIGFKIREARLERVPYMLVIGDKEVESETVAVRAREE 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +   + I       ++ 
Sbjct: 614 GELGAVDASKFIGDLVKEIADK 635


>gi|312951108|ref|ZP_07770013.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310630884|gb|EFQ14167.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315154152|gb|EFT98168.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0031]
          Length = 660

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|290969075|ref|ZP_06560610.1| threonine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781031|gb|EFD93624.1| threonine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 635

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 149/437 (34%), Gaps = 41/437 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +   H+   G   +   G    +++    RE        E+  
Sbjct: 237 EAEKRDHRKLGKQLDLFS--FHEEGPGFPFFHAKGMVLRNSLLKFWRELHAEADYDEIMT 294

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           PT+ +  LW +SG +D Y   M      +++     P +      +++S + SYR+ P  
Sbjct: 295 PTILNRQLWEQSGHWDHYRDNMY-FTTIDEQPYAIKPMNCPGGILVYKSSVHSYRDFPIR 353

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ L  R EL     G+ R R F   DA+ F L P   K   + +   + + + + GL
Sbjct: 354 AAELGLVHRHELHGALHGLFRVRCFTQDDAHIFML-PSQMKDEISGVMDLFDKAYKQFGL 412

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +   +   + P     S E    A     +V   K         +   +   +       
Sbjct: 413 EY-HVELSTRPEDSMGSDEIWESATKTLHEVIEEKQVPYVINEGDGAFYGPKLDF----- 466

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                                   K    R  + G I             T+ G DG+ H
Sbjct: 467 ----------------------HLKDCLGRTWQCGTI-QLDMLMPERFDVTYIGEDGQKH 503

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M      G++     +I  ++ G   +W   +AP +I  + I           E   
Sbjct: 504 RPVMVHRACFGSIERFLGIITENYAGAFPVW---LAPVQIKFLPI---SDKQLAYAEDTA 557

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            R  K G  V  D   E+IG +   A +   P   IVG K ++   + ++ R  G     
Sbjct: 558 RRFKKAGLRVEVDTSSEKIGYKIRKAQMEKVPYMAIVGDKEMAAGTISVRERTQGDIGVK 617

Query: 430 SLEEVINYASHRFSNNR 446
           + EEV++       + +
Sbjct: 618 AAEEVLHMIKQLADSRQ 634


>gi|254374591|ref|ZP_04990072.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151572310|gb|EDN37964.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 634

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 155/446 (34%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + +        + S GI  W   G +    V   +R   N+
Sbjct: 230 YLNMLEE----AEKRDHRKIGKVLDLFHFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG    Y + M      N +     P +      ++ + + 
Sbjct: 286 YGCSEIRTPLIADFSLWQKSGHASKYAENMFATKSEN-RDFAIRPMNCPTCVQVYNTKLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G++R R F   D + F  TPE  +     M     
Sbjct: 345 SYRDLPIRIAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIF-CTPEQVEEEVILMVQQCF 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     ++    P       E    ++        + +     +P E   +   
Sbjct: 404 EVYKDFGFNDFAVKIALRPENRIGDDETWDKSEQMLKNALDANNVSYELLPGEGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I                               K    R  + G I      +S+P  + A
Sbjct: 464 IEF---------------------------HLKDAIGRSWQCGTI---QLDFSMPQRLGA 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G+    V +    +G++     ++   + G   +W   +AP +++++ I  +  
Sbjct: 494 TYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW---LAPVQVAVMGISNN-- 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C++++  L K G     D   E+IG +     LL  P  VI+G        + I+
Sbjct: 549 -QDDYCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIR 607

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    MS+ +   +   +    
Sbjct: 608 KHSGEDLGQMSVYDFCAFLDKQIQAK 633


>gi|290580052|ref|YP_003484444.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996951|dbj|BAH87552.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 649

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 170/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRIIERYITDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S DL+  SG +D Y ++M    D  D ++ +  P +     +++++H
Sbjct: 287 ASGYQHVYTPPIASVDLYKTSGHWDHYREDMFPTMDMGDGESFVLRPMNCPHHIEVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + +    
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVEDEFKRTLQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYSFRLSYR--------------DPNDTHKYFDDDEMWEKSQTMLKAAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      + ++  +L  ++ +S   ++    F    ++      
Sbjct: 452 DDMGLD--YYEAEGEAAFYGPKLDIQVKTALGNDETLSTIQLD----FLLPERF----EL 501

Query: 301 TFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H   M   GI +      A +  ++ G    W   +AP ++++I I   ++
Sbjct: 502 TYIGADGEEHRPVMIHRGIVSTMERFTAYLIETYKGAFPTW---LAPHQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K V    V ++
Sbjct: 557 AHIDYAWEVAKELRDHGIRADVDDRNEKMQYKIRQSQTKKVPYQLIVGDKEVESGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +      S+ E            
Sbjct: 617 RYGSKQTHTESIAEFRENILADIKRK 642


>gi|52081397|ref|YP_080188.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786773|ref|YP_092602.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319647305|ref|ZP_08001527.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
 gi|52004608|gb|AAU24550.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349275|gb|AAU41909.1| ThrS [Bacillus licheniformis ATCC 14580]
 gi|317390652|gb|EFV71457.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
          Length = 643

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 164/431 (38%), Gaps = 33/431 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +  +G+  WLP G      +   I +++   G   +  P
Sbjct: 241 AKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELALGYEHVYTP 299

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L S DL+  SG +D Y   M    + +++ ++  P +      I+++ I SYR LP   
Sbjct: 300 VLGSKDLYETSGHWDHYQDGMFPPMEMDNETLVLRPMNCPHHMMIYKNDIHSYRELPIRI 359

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R E+     G+ R R   + DA+ F + P+  K  + +       ++   GL+
Sbjct: 360 AELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKDEFIRTVRLIQDVYEDFGLE 418

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               R                  D  +T+ +   D M     S   +  D I  +    +
Sbjct: 419 EYSFRLSYR--------------DPEDTEKYYDDDEMWNKAQSMLKEAMDEIGHD--YYE 462

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      + ++  ++ + + +S   ++    F    K+      T+ G DGK H 
Sbjct: 463 AEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPEKF----DLTYVGEDGKPHR 514

Query: 312 VQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             +   G+ + M    A +   H G    W   +AP +  +I +     V  D  +K+  
Sbjct: 515 PVVIHRGVVSTMERFVAFLIEEHKGALPTW---LAPVQFQVIPVSP--SVHLDYAKKVQE 569

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G  V  D   E+IG +   A +   P  ++VG + V +  V ++       E ++
Sbjct: 570 RLQREGLRVEVDTRDEKIGYKIREAQMQKIPYMLVVGDQEVENEAVNVRKYGEQKSETVA 629

Query: 431 LEEVINYASHR 441
           + + I  A   
Sbjct: 630 IADFIKKAVAE 640


>gi|307286857|ref|ZP_07566939.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306502072|gb|EFM71358.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|315156485|gb|EFU00502.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315166285|gb|EFU10302.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315169145|gb|EFU13162.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1341]
          Length = 660

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|241764278|ref|ZP_04762308.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241366347|gb|EER60877.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 639

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 155/449 (34%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I  H+ G+  W P G      V   +R   
Sbjct: 229 QQYLTMLEE----AEKRDHRKLGRELDLFHIDDHAPGVVFWHPKGWAVWQQVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P L    LW ++G +D Y   M        +     P +      IF+  
Sbjct: 285 RDNGYLEVKGPQLLDKTLWEKTGHWDKYRDNMFTTESEK-RDYALKPMNCPGHILIFKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  + +     R+E      G+MR R F   D + F  T +            
Sbjct: 344 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIF-CTEDHILPECTAYTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G  +I  +  + P     S E    A+    +   +        P +   + 
Sbjct: 403 LQKVYKDFGFSNIIYKVATRPEARIGSDESWDKAEHALMESLRASGCEFEIAPGDGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G +      +S+P  +
Sbjct: 463 PKIEYTL---------------------------KDAIGRQWQCGTM---QVDFSMPERL 492

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + G DG  H  V +    +G++     ++   H G    W   +AP +IS++NI   
Sbjct: 493 DAEYVGEDGARHRPVMLHRAIVGSLERFIGILIEQHSGALPTW---LAPVQISVLNITDA 549

Query: 358 D-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
               CR+   K+   L      V  D   E+I  +     L   P  ++ G K  +   V
Sbjct: 550 QADYCREIAAKLQKLLPHQDLRVGLDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAV 609

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       MS+E      +   ++ 
Sbjct: 610 AVRARGNRDLGVMSVEAFAELIAQDIASK 638


>gi|229549033|ref|ZP_04437758.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|312904390|ref|ZP_07763551.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|229305826|gb|EEN71822.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|310632289|gb|EFQ15572.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315162804|gb|EFU06821.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315576849|gb|EFU89040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 660

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 166/446 (37%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++ R
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIR 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|293382457|ref|ZP_06628392.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|293387159|ref|ZP_06631720.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|312906512|ref|ZP_07765514.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312910456|ref|ZP_07769302.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|291080141|gb|EFE17505.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|291083430|gb|EFE20393.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|310627455|gb|EFQ10738.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311289228|gb|EFQ67784.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
          Length = 660

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 244 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 303 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 362

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 363 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 421

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 422 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 468 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 517

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 518 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 572

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++
Sbjct: 573 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVR 632

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   I+  +    N 
Sbjct: 633 RYGSKETSVEDLSIFIDSMAAEVHNY 658


>gi|283470950|emb|CAQ50161.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 645

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNI- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|50083997|ref|YP_045507.1| prolyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|81827514|sp|Q6FE23|SYP_ACIAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49529973|emb|CAG67685.1| prolyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 570

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY  YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPASLWEESGRYVQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHVDQASLQETYDNMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YCRIFTRLGLDFRPVQADTGSIGGSGSHEFHVLADSGEDDIVFS 224



 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A ++   D+ N    D  P+ +      RGIEVGHIF  G KYS  ++ T  G 
Sbjct: 376 VNWERDAKFSEIYDLRNVVDGDPSPDGQGVLQIKRGIEVGHIFQLGQKYSEALNCTVLGD 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVA+ IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPLVVTMGCYGIGVTRVVASAIEQNYDDKGIIWPSAIAPFEIAIVPMNAHKSPKTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGYDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRTDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ +E++    
Sbjct: 556 ESVNLTKDELLAKLK 570


>gi|261338808|ref|ZP_05966666.1| hypothetical protein ENTCAN_05003 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318631|gb|EFC57569.1| proline--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 572

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +   +  RGIEVGHIF  G KYS  M
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGDKYSRAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A  +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 NAAVQGEDGRNQVLTMGCYGIGVTRVVAAAIEQNFDERGIVWPDNIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SYRVQELAEKLYAELRAQGVDVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G ++ +   ++++Y      
Sbjct: 546 YKYRRSGEKQMIKTGDILDYLMKAIK 571


>gi|170287992|ref|YP_001738230.1| threonyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|238688803|sp|B1L7W6|SYT_THESQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170175495|gb|ACB08547.1| threonyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 640

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 165/446 (36%), Gaps = 47/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLM---LRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L  L+E    A+   H+ +   L   M+  +++ G+  +LP G   L+ +    RE   
Sbjct: 229 YLKFLEE----AQRRDHRKLGPHLELFMLNTEYAPGMPFFLPKGVVVLNELMKFSRELHR 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + +  LW  SG +D Y + M    +++++     P +      +++S  
Sbjct: 285 ERGYQEIFTPLIMNEQLWKISGHWDHYAENMY-FIEKDEERYAVKPMNCPGHILVYKSRT 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  F++     R E      G+MR R F   DA+ F  TP   +     +    
Sbjct: 344 VSYRDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIF-CTPGQIEEEILGVLDLI 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+ + G     +   + P            A T                  E      
Sbjct: 403 NTIYSQFGFTYR-VELSTMPEDHMGDEAIWEKATTALKNALERAGLSYKVNEGEG----- 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + DS+    + +   ++               + T
Sbjct: 457 ---------------AFYGPKIDFHIRDSIGREWQCATIQLDFMMPEK--------FNVT 493

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D K+H  V +     G++     ++     G    W   +AP ++++I I    + 
Sbjct: 494 YIGPDNKEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTW---LAPIQVAVIPI---SEK 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ ++ 
Sbjct: 548 HNDGAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKISVRT 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     +D+ LE  +    +   + +
Sbjct: 608 RTGKEIKDVDLEHFVETLRNEVLSRK 633


>gi|237755902|ref|ZP_04584494.1| threonyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691927|gb|EEP60943.1| threonyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 643

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 153/450 (34%), Gaps = 39/450 (8%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +L+E   RD       L L   +  +   G+  WLP G      +    ++E
Sbjct: 230 KELKDYLNMLEEAKKRDHRKIGKDLELFL-IDEEIGGGLAIWLPKGAIIRKEIEDAWKKE 288

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +    LW  SG    Y + M       ++     P +     +I++S
Sbjct: 289 HLKRGYQLVYTPHVGKEQLWQTSGHLSLYQENMYPRMQIEEEGYYVKPMNCPFHVEIYKS 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP    ++   +R E      G+MR R F   DA+      +  +    ++  
Sbjct: 349 KQRSYKELPIRLAELGTVYRYERSGALHGLMRVRGFTQDDAHII-CREDQVEDEIREVLN 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L      G     +   + P       +   +A+    +   S               
Sbjct: 408 LALNTLKSYGFDEFEVYLSTKPEKYVGDDKMWEIAENSLRKAIESTGLDYKIDEGGG--- 464

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    + S    +    F    ++     
Sbjct: 465 -----------------AFYGPKIDVKIKDAIGRLWQCSTIQFD----FNLPERF----D 499

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G D + H    +     G++     V+   + G   +W   ++P ++ +I I    
Sbjct: 500 MYYIGEDNQKHRPYMIHRAIFGSIERFIGVLLEHYAGFLPVW---LSPVQVKIIPIADK- 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  E +  +L +    V  DD  E++  +   A+L   P  ++VG K      V +
Sbjct: 556 --HLEYAETVKQKLLENDIRVELDDRNERMNKKIRDAELQKIPFMLVVGDKEAETGTVAV 613

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + +     + +S++E ++      SN   +
Sbjct: 614 REKGKQGSQTLSIDEFVSKIKEIISNKHAL 643


>gi|256823089|ref|YP_003147052.1| prolyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796628|gb|ACV27284.1| prolyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 571

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E+P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRSSQYLLSTQREDPSDAELISHKLMLRAGMIRKIASGMYTWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIEM +P++Q ++LW ESGR+D +G E+LR  DR+ +    GPTHEE++T + R 
Sbjct: 61  MNKAGAIEMLMPSVQPSELWEESGRWDQFGPELLRFKDRHGRDFCLGPTHEEIITAVIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP +FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF +  E    +Y  M  +
Sbjct: 121 EINSYKQLPASFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHVDEESLSETYQVMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GL   P+ A++G IGG  SHEF VLA++GE  +  S +     
Sbjct: 181 YCNIFERIGLDYRPVLADTGAIGGSNSHEFHVLAESGEDAIAFSSEGDYAA 231



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             Q  A  +   D+ N    D  P+ K      RGIEVGHIF  G KYS  M+      +
Sbjct: 373 NWQRDAQISEVMDIRNVVAGDPSPDGKGILEIKRGIEVGHIFQLGNKYSEAMNCKVLDQN 432

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   + MG YG+G  R+VAA IE ++D  GIIWP ++APF++++I +  H  +  +   
Sbjct: 433 GKAVTLAMGCYGVGVSRIVAAAIEQNYDNNGIIWPQAIAPFQVAIIPMNMHRSEQVQQIA 492

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+Y  L + G DV +DD  E+ G  F+  +L+G P +++V  + + +  +E K+R    
Sbjct: 493 DKLYQDLQQQGIDVIFDDRKERPGVMFSDMELIGVPHRLVVSERGLENGTIEYKNRQNTA 552

Query: 426 REDMSLEEVINYASHRFSN 444
           ++D+S+E V++Y       
Sbjct: 553 KDDVSVENVVDYIKGLLQQ 571


>gi|309389087|gb|ADO76967.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Halanaerobium
           praevalens DSM 2228]
          Length = 643

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 155/445 (34%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY   + +   RD      +L L +  +    +G   + P G    + +    +EE  
Sbjct: 229 LEKYLNRVEEAKKRDHRKLGKELDLFS--MQDEGRGFPFFHPKGMALRNALVDFWKEEHY 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P +    LW +SG +D Y   M      +++A    P +      +++  +
Sbjct: 287 QAGYEEIQTPIILDESLWHQSGHWDHYQDNMY-FTKIDEEAHAVKPMNCPGGILVYKDSM 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ L  R E+     G+MR R F   DA+ + L P   +   + +    
Sbjct: 346 HSYRELPIRMAELGLVHRHEMSGALHGLMRVRSFTQDDAHIYCL-PSQIETELSGVIKLV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I+   G     +   + P            A T   Q    K+ +D+ + + +  F  
Sbjct: 405 DKIYSAFGFNY-NVELSTKPEKAMGDDALWNKA-TDALQNAIEKNNLDYEVNAGDGAF-- 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                         Y    D H E              R  + G I     +        
Sbjct: 461 --------------YGPKIDFHLEDSLG----------RTWQCGTI-QLDFQMPERFDLN 495

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG++H  V +     G++     ++     G    W   +AP ++ +I +      
Sbjct: 496 YIGQDGEEHRPVMIHRAIYGSIERFIGILIEHFAGAFPTW---MAPVQVEIIPV---SDD 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L +    V  D   E++G +   A +   P  +IVGS+   +  V ++ 
Sbjct: 550 QIDYAMQVKEELKQEKIRVEVDSRSEKVGYKIRDAQVKQVPYMLIVGSREEDNGTVSVRD 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G     +L E         +  
Sbjct: 610 RREGDLGTSNLAEFKENILEEIAAK 634


>gi|330828282|ref|YP_004391234.1| Prolyl-tRNA synthetase, family II [Aeromonas veronii B565]
 gi|328803418|gb|AEB48617.1| Prolyl-tRNA synthetase, family II [Aeromonas veronii B565]
          Length = 574

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 158/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEVVSHQLMLRAGMIRKLASGMYAWLPTGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAVEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITALVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +  E    +Y KM  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKESLVDTYEKMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y + F R+GL   P++A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCKAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGEDLIAFSD 225



 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              + K +  RGIEVGHIF  GTKYS  M A+     GK   ++MG YGIG  R+VAA I
Sbjct: 399 PCGQGKLLLKRGIEVGHIFQLGTKYSEAMKASVLNEAGKSVTMEMGCYGIGVSRLVAAAI 458

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E ++D  GIIWPD++APF+++++ +  H  +   +  ++ YA L   G DV +DD  E+ 
Sbjct: 459 EQNNDQYGIIWPDAIAPFEVAIVPMNMHKSERVAEQAQQFYAELKAAGVDVLFDDRKERP 518

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G  FA  +LLG P  +++G + + +  VE K R TG ++++++ ++I     + 
Sbjct: 519 GVMFADMELLGIPHAIVIGDRGLDNGVVEYKCRRTGEKQEVAISDIIAMLKAKL 572


>gi|261245474|emb|CBG23264.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
          Length = 572

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLVSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 546 YKYRRSGEKSLIKTGDIVDYLVKAIK 571


>gi|195016104|ref|XP_001984341.1| GH15069 [Drosophila grimshawi]
 gi|193897823|gb|EDV96689.1| GH15069 [Drosophila grimshawi]
          Length = 461

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 138/463 (29%), Positives = 230/463 (49%), Gaps = 40/463 (8%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S  F P L   P++A +        S KL+   G++     G Y  +P+ Q+A+D   
Sbjct: 3   KASSLFWPAL-VTPKNAIVKQTEQLSRSQKLLTELGLVKPGCNGTYQIMPIAQRAVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQRNMQEAGGQKISMPVLTPTQLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD+T E ++ +
Sbjct: 122 TAMLATTAPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVTKEAAEKT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y ++  +Y + F +L +  + + A +G +GG LSHE+  ++  GE  +    +       
Sbjct: 182 YARISNTYAQFFRQLEVPFVTVEAATGIMGGSLSHEYHYISPVGEDTLLKCNNCGYA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                         +     S   ++ +  RG+EV H F  G K
Sbjct: 239 ---------------------GNVEVFGNTSANTCPSCQGSQLIPVRGVEVAHTFLLGDK 277

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E     + + WP  +AP+ + LI 
Sbjct: 278 YSKPLGATFLNTSGKPETLVMGCYGIGITRVIAAALEVLSTEQELRWPKLLAPYDVCLIG 337

Query: 354 IKA--HDQVCRDACE-KIYARLSKV-GC-DVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K    +QV  +  E ++  +L+++ G  ++  DD  E  IG +   A  LG PL ++VG
Sbjct: 338 PKQGSKEQVPAEGVEIELLQQLTQICGAEELLHDDRKELTIGKRLFDAKRLGHPLTIVVG 397

Query: 408 SKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFSNNRPVL 449
           +K V   + +++  L+G  + ++ L EV++  +    + + +L
Sbjct: 398 TKAVQKEEPKLELHLSGAEKLELELPEVLSLVTAHVRHKQQLL 440


>gi|15643503|ref|NP_228549.1| threonyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|8928373|sp|Q9WZJ9|SYT_THEMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4981265|gb|AAD35821.1|AE001744_11 threonyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 640

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 163/443 (36%), Gaps = 41/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L   +  +++ G+  +LP G   L+ +    RE     G
Sbjct: 229 YLKFLEEAQRRDHRKLGPQLELFM-LNTEYAPGMPFFLPKGVVVLNELMKFSRELHRERG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M    +++++     P +      +++S   SY
Sbjct: 288 YQEIFTPLIMNEQLWKISGHWDHYAENMY-FIEKDEERYAVKPMNCPGHILVYKSRTVSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++     R E      G+MR R F   DA+ F  TP+  +     +      I
Sbjct: 347 RDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIF-CTPDQIEEEILGVLDLINTI 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G     +   + P            A T                  E         
Sbjct: 406 YSQFGFTYR-VELSTMPEDHMGDEAIWEKATTALKNALERAGLSYKVNEGEG-------- 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  + DS+    + +   ++               + T+ G
Sbjct: 457 ------------AFYGPKIDFHIRDSIGREWQCATIQLDFMMPEK--------FNVTYIG 496

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D K+H  V +     G++     ++     G    W   +AP ++++I I    +   D
Sbjct: 497 PDNKEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTW---LAPIQVAVIPI---SEKHND 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ ++ R  
Sbjct: 551 GAEKVARRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIIIGDKELESGKISVRTRTG 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              +D+  E  +    +   + +
Sbjct: 611 KEIKDVDPEHFVETLRNEVLSRK 633


>gi|302335586|ref|YP_003800793.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Olsenella uli
           DSM 7084]
 gi|301319426|gb|ADK67913.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Olsenella uli
           DSM 7084]
          Length = 588

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 153/439 (34%), Gaps = 48/439 (10%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +AE   H+ + +     M+ +   G   WLP G +  + +    +E Q+R G  ++  P
Sbjct: 189 AEAEKRDHRKIGKEMGLFMMSEAGPGFPFWLPNGMRVRNALMDYWQEMQDRFGYEQVQTP 248

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + S  LW  SG +D Y   M      +D+     P +      +++S  +SYR+LP   
Sbjct: 249 IILSRTLWETSGHWDHYKDNMYTTQ-IDDEDFAIKPMNCPGACLVYKSKPRSYRDLPLKL 307

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  L  R EL+    G+ R REF   DA+ F + P+                + + G  
Sbjct: 308 AEAGLDHRHELKGALHGLFRVREFTQDDAHLF-IRPDQITEQVTDTAHLITTYYAQFGFP 366

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A+ G      S          +   +   I        
Sbjct: 367 Y-HVELSTRPEDSMGSDEDWERAEQGLRDALDSMGVDYIVNEGDGAFYGPKIDF------ 419

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-K 308
                                  +    R  + G I      + LP      +   DG K
Sbjct: 420 ---------------------HLQDCLGRTWQCGTI---QLDFQLPHNFQLEYTAPDGSK 455

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +   G G+      ++   ++GK   W   ++P ++ ++ +    +  RD   ++
Sbjct: 456 QQPIMIHRAGFGSFERFIGMLIEQYEGKFPTW---LSPCQVKVLPV---SEKTRDYALEV 509

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L   G  V  D   E+IG +   A      P  +I+G K    + + ++ R      
Sbjct: 510 ARTLRAAGVRVKVDVRDEKIGYKIREARSADRVPYMLILGEKEAEANNISVRDRSN-ETH 568

Query: 428 DMSLEEVINYASHRFSNNR 446
             +LE+ +   +    + R
Sbjct: 569 QATLEDFVTEITAEIRDRR 587


>gi|170723171|ref|YP_001750859.1| prolyl-tRNA synthetase [Pseudomonas putida W619]
 gi|226701321|sp|B1JD82|SYP_PSEPW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169761174|gb|ACA74490.1| prolyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 571

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  V  S       
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDSSDYAA 231



 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 DVVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|255035014|ref|YP_003085635.1| threonyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254947770|gb|ACT92470.1| threonyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 647

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 176/445 (39%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L      +  +G+  WLP G    + + A + + Q+
Sbjct: 233 LEEYVTLMEEAKKRDHRRLGKELELFA-FSEKVGQGLPLWLPKGAMLRERLQAFLSKAQS 291

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R G + +  P + S DL+V SG +D YGK+  +       D+  +  P +     +I+++
Sbjct: 292 RAGYVPVITPHIGSKDLYVTSGHWDKYGKDSFQPIKTPNLDEEYMLKPMNCPHHCEIYKT 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 352 SPRSYKDLPLRFSEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFIRVID 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG      +                  D    + +  KD       S   + 
Sbjct: 411 LVLYVFKSLGFNDYSAQISLR--------------DPNNKEKYIGKDEDWEKAESAIIEA 456

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                L+++ E   A +                  +    R  ++G I      Y LP  
Sbjct: 457 AAERGLSTVTELGEAAFYGPKLDF---------MVRDALGRKWQLGTI---QVDYQLPQR 504

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G+D + H  V +     G+M    A++  +  G+  +W   ++P +I+++ I  
Sbjct: 505 FQLEYTGSDNQKHRPVMIHRAPFGSMERFTAILIENTAGQFPLW---LSPDQIAILPI-- 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D  E+++ +L       F D   E+IG +   A++   P  +IVG K  ++ K+
Sbjct: 560 -SEKFADYAEEVFFQLQDHDIRGFVDHRDEKIGRKIRDAEVTKVPFMLIVGEKEAAEGKL 618

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ +  G    M++EE   +    
Sbjct: 619 SVRRKGEGDLGSMTIEEFAAFFKKE 643


>gi|56964462|ref|YP_176193.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56910705|dbj|BAD65232.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 643

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 171/437 (39%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L +   +  +  +G+  WLP G      +   I +++ R G 
Sbjct: 235 LRLLEEAKERDHRKLGKELGIFA-LSPKVGQGLPLWLPKGATIRRIIERYIVDKEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S++L+  SG +D Y  +M    + +++ ++  P +      +++  ++SYR
Sbjct: 294 QHVYTPILGSSELYKTSGHWDHYQDDMFPPMEMDNETLVLRPMNCPHHMMVYKQDMRSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E+     G+ R R   + DA+ F   P+  K  + ++      ++
Sbjct: 354 QLPLRIAELGMMHRYEMSGAVSGLQRVRGMTLNDAHIF-CRPDQIKEEFVRVVRLIQEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                  D  + + +   D M     +   +  D +  
Sbjct: 413 KDFGLNDYKFRLSYR--------------DPEDKEKYFDDDDMWNKAQAMLKEAMDTLG- 457

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 458 -LPYYEAIGEAAFYGPKLDVQVKTALGKEETLSTVQLD----FLLPERF----DLTYVGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +   ++V  D 
Sbjct: 509 DGKLHRPVVVHRGVVSTMERFVAFLLEEYKGALPTW---LAPVQVQVIPVS--NEVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L + G  V  DD  E++G +   A +   P  +++G K V+   V ++     
Sbjct: 564 AKRVIEQLQQAGVRVEIDDRDEKLGYKIREAQIQKIPYMLVLGDKEVAAEAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHR 441
                 L   ++     
Sbjct: 624 ASSSQPLSVFVDEIGKE 640


>gi|26987940|ref|NP_743365.1| prolyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|81840777|sp|Q88NK2|SYP_PSEPK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24982651|gb|AAN66829.1|AE016311_9 prolyl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 571

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S       
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDSSDYAA 231



 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DVVREATDKLYAELTAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|237736526|ref|ZP_04567007.1| threonyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229421568|gb|EEO36615.1| threonyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 638

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 165/446 (36%), Gaps = 46/446 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L +L+E   RD      +L L    + ++  G   +LP G    + +  + + E
Sbjct: 226 KKLKDYLTLLEEAEKRDHRKLGKELDLF--FVSEYGPGFPIFLPKGMAIRNTLINLWKRE 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG + +Y + M   +  ++      P +       ++ 
Sbjct: 284 HTLAGYTEIMTPIMLNKELWETSGHWYNYRENMYT-STIDETEFAIKPMNCPGGIIAYKY 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SY++LP    ++    R E      G+MR R F   DA+ F +TPE  +     +  
Sbjct: 343 QLHSYKDLPIRCGELGTVHRHEFSGALHGLMRVRCFTQDDAHIF-MTPEQIEEEIIGVVN 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              + + +L      +   + P     S E    A++                P +   +
Sbjct: 402 LIDKFYSKLFGFEYHIELSTKPEKAIGSDEIWEKAESALAGALEKIGKSYKLNPGDGAFY 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              +                               K    R  + G I      ++LP  
Sbjct: 462 GPKLDFK---------------------------IKDAIGRTWQCGTI---QLDFNLPER 491

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ I  
Sbjct: 492 FDISYIGEDGEKHRPVMIHRVVYGSIERFIGILIEHYAGAFPLW---LAPTQVKVLTIN- 547

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSK 415
                +   E+I   L + G     DD  E IG +   A+     P+Q+I+G   V + +
Sbjct: 548 --DETKPYAEEICRTLLERGIRAELDDRAESIGYKIREANGKYKVPVQLIIGKNEVENRE 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V I+ R +  +  M L+E ++     
Sbjct: 606 VNIRRRGSQEQTSMKLDEFLDMIVDE 631


>gi|192292254|ref|YP_001992859.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192286003|gb|ACF02384.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 687

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 144/446 (32%), Gaps = 44/446 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++   +R       
Sbjct: 263 YLHQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWSLFQSLVGYMRRRLAG-D 319

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M           + +     P +      IF+ 
Sbjct: 320 YDEVNAPQILDKVLWETSGHWEWYRENMFAAQSAGDDAEDKRWFALKPMNCPGHVQIFKH 379

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T         K+  
Sbjct: 380 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEAQLAEECIKIND 438

Query: 180 SYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  +   G +  + ++  + P     + E    A+        +    +      N  
Sbjct: 439 LILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAER-----VMATVLSEIKAKGGNRI 493

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
             +I             Y                       R  + G        ++LP 
Sbjct: 494 KTEINPGEGAFYGPKFEYVLRDA----------------IGRDWQCGTT---QVDFNLPE 534

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A +  ADG K   V +     G+M     ++   + G   +W   +AP ++ +  I 
Sbjct: 535 RFGAFYIDADGAKKAPVMVHRAICGSMERFTGILIEHYAGNFPLW---LAPVQVVVTTIT 591

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      D  +K+ A L K G     D   E+I  +     L   P  ++VG K      
Sbjct: 592 SEGD---DYAKKVLAALRKAGLRADIDLRNEKINFKVREHSLAKVPALLVVGKKEAESHS 648

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++   +  ++ M  +E I      
Sbjct: 649 VSVRRLGSEGQKVMPTDEAIAALVDE 674


>gi|313497556|gb|ADR58922.1| ProS [Pseudomonas putida BIRD-1]
          Length = 571

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S       
Sbjct: 181 YTNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDSSDYAA 231



 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DVVREATDKLYAELTAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|260583498|ref|ZP_05851246.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158124|gb|EEW93192.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 647

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 167/451 (37%), Gaps = 39/451 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K FL + +E   RD      +L L   MI  +   G+  WLP G      +   I +++ 
Sbjct: 227 KEFLKMREEAKERDHRKLGKELDLF--MISQEVGSGLPFWLPKGATIRRTIERYIVDKEI 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSH 121
             G   +  P +    L+  SG +  Y ++M    D  D  + +  P +      ++++H
Sbjct: 285 SLGYQHVYTPVMADVGLYKTSGHWAHYQEDMFPPMDMGDGELLVLRPMNCPHHMMVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + ++   
Sbjct: 345 IHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRILDL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++    +K    R                  D  +   +   D M     +   +  
Sbjct: 404 IREVYKDFNVKDYRFRLSYR--------------DPEDKHKYFDDDEMWNKAEAMLKEAM 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D +       +     A      + +   ++   + +S   ++    F    ++      
Sbjct: 450 DEMG--LEYFEAIGEAAFYGPKLDIQFKTAMGLEETMSTIQLD----FLLPERF----DL 499

Query: 301 TFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T+ G DG +    V +    +       A +   + G    W   +AP + ++I +    
Sbjct: 500 TYVGEDGDNTHRPVVIHRGVVSTAERFVAYLIEEYKGAFPTW---LAPVQATIIPVSV-- 554

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   DA   +  ++  +G  V  DD  E++G +   +     P Q+++G K V +  V +
Sbjct: 555 EHHYDAARALKEKMMSLGLRVELDDRNEKMGYKIRASQTQKIPYQLVIGDKEVEEGTVTV 614

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN-NRPV 448
           +   +     M++   +       +N +RP+
Sbjct: 615 RRYGSKETVSMTIGAYLERVQREIANFSRPL 645


>gi|148546477|ref|YP_001266579.1| prolyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166980143|sp|A5VZT5|SYP_PSEP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148510535|gb|ABQ77395.1| prolyl-tRNA synthetase [Pseudomonas putida F1]
          Length = 571

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S       
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDSSDYAA 231



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +V R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 EVVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|308513249|ref|YP_003474861.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|307346955|gb|ADC90325.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 646

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 161/446 (36%), Gaps = 47/446 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L   M  +   G   +LP G    + +    RE   R  
Sbjct: 230 YLAKLEEAKRRDHRKLGKEMNLF--MFSEEGPGFPFFLPNGMILKNTLLDYWREVHRRED 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + +  LW  SG +  Y   M      +D+     P +       F+S I SY
Sbjct: 288 YREISTPIMLNRHLWETSGHWFHYRDNMYT-TVIDDEDFAIKPMNCPGSMLTFKSTIHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+MR R F   DA+ F +TP+  +    ++      +
Sbjct: 347 RDLPLRLAELGLVHRHEKSGVLHGLMRVRAFTQDDAHIF-MTPDQIRDEIKRVVRLIDEV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +H    K   +   + P     + E   +A                          D+  
Sbjct: 406 YHHFNFKY-HIELSTRPEDSMGTDEEWNMATEALRLAVE-----------------DLKI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              I E   A Y    D H E              R  + G I   F    ++     A 
Sbjct: 448 PYVINEGDGAFYGPKLDFHLEDSLG----------RTWQCGTIQLDFQLPQRF----EAE 493

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG  H  + +    +G++     ++     GK   W   +AP ++ +++I  +   
Sbjct: 494 YIGPDGNRHRPIVIHRVVLGSIERFIGILIEHLAGKFPTW---LAPVQVRILSISDN--- 547

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++ A L   G    +DD  E+IG +   A +   P  +I+G + +++ +V ++ 
Sbjct: 548 QNSYCSELLAELKNAGIRAEFDDRNEKIGFKVRAAQVEKIPYMLIIGDQEMNEHRVSLRL 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       +   E I+      ++ R
Sbjct: 608 RDRQENIQLPTAEFISKVVAEIADRR 633


>gi|116333673|ref|YP_795200.1| threonyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269640|sp|Q03RK3|SYT_LACBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116099020|gb|ABJ64169.1| Threonyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 647

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 163/443 (36%), Gaps = 36/443 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
                +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G
Sbjct: 232 LARRQEARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIIDKEVSNG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + DL+ +SG +  Y ++M    D  D  M+   P +      ++  HI+S
Sbjct: 290 YQHVYTPVLANLDLYKQSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHIRS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + D ++F   PE  +  +  +    ++
Sbjct: 350 YRELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-PEQIQDEFKSILDLMVK 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +K    R                  D   T+ +   D M     +      D +
Sbjct: 409 VYADFDIKDYTFRLSYR--------------DPKNTEKYFDDDEMWNNAQAMLKGAMDDL 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L  +        A      + +   +L   + +S   ++    F    ++       + 
Sbjct: 455 GLPYVEA--EGEAAFYGPKLDVQTKTALGNEETLSTIQLD----FMLPERF----DLHYV 504

Query: 304 GADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG++H   M   G+ + M    A +   + G    W   +AP ++++I +   ++   
Sbjct: 505 GADGEEHRPVMIHRGLVSTMERFTAYLTEIYKGAFPTW---LAPKQVTIIPVS--EEKHG 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +K+ A L      V  D  GE++G     A     P  ++VG   +S+  V ++   
Sbjct: 560 AYADKLAAELKAADIRVNVDKRGEKMGYLIRDAQTHKIPYTLVVGEDEMSNGSVSVRKYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS +  +       ++ 
Sbjct: 620 ENQTTSMSSDAFVKEILADIASY 642


>gi|289208097|ref|YP_003460163.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943728|gb|ADC71427.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 638

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 153/447 (34%), Gaps = 39/447 (8%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L+E  R D      +L L + +  +   G+  W P G +    +     +  
Sbjct: 227 QLKEYLERLKEAERRDHRKIGQELDLFS-IQDEAGGGLVFWHPKGARIRREIEKYWYDMH 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P + + +LW  SG  D Y + M    +   +A    P +      +++  
Sbjct: 286 EKAGYDFVVSPHIANLELWKTSGHADFYAESMYEPMEDEHQAFQLKPMNCPFHVLMYKDR 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP  + ++   +R E+     G+MR R F   DA+ F    +  +     +   
Sbjct: 346 LHSYRDLPLRWAEMGTVYRREMSGALHGLMRVRGFTQDDAHIF-CREDQIEAEVMAVIDL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +    G +   +   + P     S E    A          K               
Sbjct: 405 TLEVLQTFGFEKFDVNLSTKPEDAVGSDEIWEHATASLRSAIEKKGLEYSVDEGGG---- 460

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D++    + S   ++    F    ++      
Sbjct: 461 ----------------AFYGPKIDIKIHDAIGREWQCSTVQLD----FNLPERF----DM 496

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   + +    +G++     V+   + G    W   +AP +  ++ I    +
Sbjct: 497 EYVAEDNERRRPIMIHRALLGSVERFFGVLIEHYAGHFPTW---LAPVQAEVLTIT---E 550

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G  V  D   E+IG +     L   P  +++G K + + +V ++
Sbjct: 551 RQDDYAREVTRALRDKGFRVESDLRNEKIGFKIREHTLKRVPYLLVLGDKEMENGQVAVR 610

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R       MS+E          ++ +
Sbjct: 611 TRSGEDLGVMSVEAFGERLREEVASRQ 637


>gi|157147374|ref|YP_001454693.1| prolyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|166980115|sp|A8AL94|SYP_CITK8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157084579|gb|ABV14257.1| hypothetical protein CKO_03172 [Citrobacter koseri ATCC BAA-895]
          Length = 572

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG+ SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y  L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYGELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E++++      
Sbjct: 546 YKYRRNGEKQLIKTGEIVDFLVKAIK 571


>gi|45658307|ref|YP_002393.1| threonyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59798553|sp|Q72PK6|SYT_LEPIC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|45601549|gb|AAS71030.1| threonyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 638

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 161/447 (36%), Gaps = 44/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      ++ L +    +   G   W P G    +++   +R E N
Sbjct: 232 LDQYLFQIEEAKKRDHRKIGKEMDLFS--FQKEGPGFPFWHPKGTILWNSLAEYLRSECN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+
Sbjct: 290 KRGYQEIKTPAVLSSELWKKSGHWDNFHENMY-FTDIDEEDYALKPMNCPGCSLIYKHHL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  F +     R EL     G+ R R F   D++ +    +  +     +    
Sbjct: 349 HSYRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIY-APLDYLESEVMDIIDFT 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ + G         + P       E    A +   Q    K         E   +  
Sbjct: 408 FTVYKKFGFSEFKTFIATRPEKSQGKDEDWEFATSTLKQSLEKKGIPYGIKEGEGAFYGP 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I  N                            K    R  + G I      +S+P    
Sbjct: 468 KIEFN---------------------------IKDSIGRLWQCGTI---QVDFSMPERFD 497

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +  +DG K   V +     G++     ++   ++GK  +W   ++P +I ++ +    
Sbjct: 498 LDYTDSDGQKKRPVMIHRAIYGSLERFIGILIEHYEGKFPLW---ISPNQIRILTVT--- 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  + +Y  L   G  V  D   E+IG++   + L      +I+G K +  + + +
Sbjct: 552 EKVTDYAKNVYRELLDSGFRVELDTRNEKIGAKIRDSILKKANYLLILGEKEMESNTLAV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R     + ++    I+       ++
Sbjct: 612 RMRGQEDTKILTRTGFISNLQDEIKSS 638


>gi|326386620|ref|ZP_08208242.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208935|gb|EGD59730.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 663

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 144/450 (32%), Gaps = 48/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    +   + G   W P G +    + A +R   +  G 
Sbjct: 240 LTRLEEAAKRDHRKLGQEMDLF--HLQAEAHGSVFWHPKGYRIWRELEAYMRRAIDGAGY 297

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
            E+  P +  A  W  SG +  Y + M  + D              +   M   P +   
Sbjct: 298 REVKTPQVMDARQWEASGHWGKYRENMFVIPDEVPNVEDEGPLVSDDAAWMALKPMNCPA 357

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR  IKSYR LP  FY+     R+E      G+MR R+F   DA+ F    +    
Sbjct: 358 HVLIFRQGIKSYRELPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CREDQIVE 416

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     RI+   G     ++    P     S E   + D  E ++  +        
Sbjct: 417 EVRAFCELADRIYKDFGFTY-AIKLALRPEKRFGSDE---MWDQAEAELRNAVAAAGLAT 472

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P    +           +       A                     R  +VG I     
Sbjct: 473 PEYGWEELPGEGAFYAPKLEWHLTDA-------------------IGRTWQVGTI-QSDR 512

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H  V +     G+      ++     GK  +W   +AP +  +
Sbjct: 513 VLPERLDASYIGEDGERHRPVMLHRAIFGSYERFIGILIEHFAGKLPVW---LAPVQAVV 569

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             I +         ++    L+  G  V  D   E+I  +     L   P  ++VG +  
Sbjct: 570 ATIVSD---ADGYAQETVQTLAAAGIRVEADTRNEKINYKVREHSLQKVPFLLVVGKREA 626

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  V ++      ++ + L E I      
Sbjct: 627 EEGTVAVRRLGEQQQKVLPLAEAIALIKGE 656


>gi|320353536|ref|YP_004194875.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122038|gb|ADW17584.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
          Length = 641

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 160/441 (36%), Gaps = 38/441 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T +  Q   G+  W P G      +    ++E  
Sbjct: 231 LQQYLARLEEARKRDHRKLGKQLGLFT-IQDQIGPGLILWQPRGALLRRLIEDYWKDEHY 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   DLW  SG  D YG+ M    + ++      P +      ++ +  
Sbjct: 290 RNGYQLLYTPHIARQDLWKTSGHLDFYGENMYSAMEIDEVMYQLKPMNCPFHIGVYNADK 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR  P  + ++   +R E      G+MR R F   DA+ F   P+  +     +    
Sbjct: 350 HSYREFPIRWCELGTVYRYERTGALHGLMRVRGFTQDDAHIF-CRPDQLEEEIFNIIDLN 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I    G     +   + P     S E   L+     Q    K       P E   +  
Sbjct: 409 LHILKTFGFDQYDVYLSTRPEKYVGSDEHWQLSTQALKQALEKKGLAYQLDPGEGVFYGP 468

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                    + K+ D L  + + S   ++    F    ++ +     
Sbjct: 469 KI--------------------DIKIKDQLGRSWQCSTIQVD----FNLPERFQM----N 500

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG +H  + +    +G++     V+   + G   +W   +AP +  ++NI      
Sbjct: 501 YTGVDGAEHQPIMIHRALMGSLERFIGVLIEHYAGAFPLW---LAPEQARIMNITDD--- 554

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + CE+++ARL  +G  +  D   E++  +   A L+  P  +IVG +   +  V ++ 
Sbjct: 555 QGEYCEQVHARLRAMGVRIDKDVRNEKLNYKIREAQLMKVPYMLIVGEREKQEGTVTVRK 614

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R       M+ E  ++     
Sbjct: 615 RDGENLPAMTPEAFVDLVIEE 635


>gi|325274563|ref|ZP_08140621.1| prolyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324100290|gb|EGB98078.1| prolyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 571

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  V  S       
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDSSDYAA 231



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLIIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 EAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQPLPLNEVLTFLQARVR 570


>gi|157371993|ref|YP_001479982.1| prolyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166980154|sp|A8GIB4|SYP_SERP5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157323757|gb|ABV42854.1| prolyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 572

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVCMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYEAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLPLPQVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVLTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SFRVQALAEELYNTLRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSEEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   EVI++   +  
Sbjct: 546 YKNRRVGEKQMIKTGEVIDFLLGQIK 571


>gi|150021207|ref|YP_001306561.1| threonyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|149793728|gb|ABR31176.1| threonyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 636

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 165/446 (36%), Gaps = 47/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLML-RTGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L +L+E    A+   H+ +  + G+       + G+  +LP G   L+ + A  R    
Sbjct: 232 YLKMLEE----AKKRDHRKLGPKLGLFFINTDVAAGMPIFLPKGTIILNELMAFSRSLHE 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + +  LW +SG +D Y + M    ++ +      P +      I+++++
Sbjct: 288 EYGYTEVMTPLVMNVKLWYQSGHWDHYKENMY-FTEKEEVEYAIKPMNCPGHILIYKNNV 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP   ++     R E      G++R R F   DA+ F    +  +   +K+    
Sbjct: 347 VSYRDLPIRLFEFGKVHRYERSGVLHGLLRVRAFTQDDAHIF-CRQDQIEEEVSKVVKLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++   G         + P       E    A     +V             E      
Sbjct: 406 DQLYKPFGFSYRAT-LSTMPEDHMGDEETWEKATNALRKVLEDIKLEFEVAEGEG----- 459

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + DSL    + +   ++    F    ++      T
Sbjct: 460 ---------------AFYGPKVDFHVRDSLGREWQCATIQLD----FQMPERF----ELT 496

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V + +   G++     ++     G   +W   ++P ++ ++ +      
Sbjct: 497 YVDKDGIEKRPVMIHTAKYGSLERFFGILIEHFAGAFPLW---LSPIQVVVLPV---SDK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 KIY+ L + G  V  DD  E +G +   A +   P  +IVG +     K+ I+ 
Sbjct: 551 YVSYARKIYSILMENGVRVSVDDRNETLGYKIREAQINKIPYMIIVGEREEESGKISIRS 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R    ++D+++EE ++  S      R
Sbjct: 611 RDGVEQKDIAVEEFLDLLSVSIKERR 636


>gi|188996057|ref|YP_001930308.1| threonyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229558457|sp|B2V6M2|SYT_SULSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188931124|gb|ACD65754.1| threonyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 643

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 152/447 (34%), Gaps = 39/447 (8%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +L+E   RD       L L   +  +   G+  WLP G      +    ++E
Sbjct: 230 KELKDYLNMLEEAKKRDHRKIGKDLELFL-IDEEIGGGLAIWLPKGAIIRKEIEDAWKKE 288

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +    LW  SG    Y + M       ++     P +     +I++S
Sbjct: 289 HLKRGYQLVYTPHVGKEQLWQTSGHLSFYQENMYPRMQIEEEGYYVKPMNCPFHVEIYKS 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+  P    ++   +R E      G+MR R F   DA+      +  +    ++  
Sbjct: 349 KQRSYKEFPIRLAELGTVYRYERSGALHGLMRVRGFTQDDAHII-CREDQVEDEIREVLN 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L      G     +   + P       +   +A+    +   S               
Sbjct: 408 LALNTLKSYGFDEFEVYLSTKPEKYVGDDKMWEVAENSLRKAIES--------------- 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                     +      A      + K+ D++    + S    +    F    ++     
Sbjct: 453 -----TGLDYKIDDGGGAFYGPKIDVKIKDAIGRLWQCSTIQFD----FNLPERF----D 499

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G D + H    +     G++     V+   + G   +W   ++P ++ +I I    
Sbjct: 500 MYYIGEDNQKHRPYMIHRAIFGSIERFIGVLLEHYAGFLPVW---LSPVQVKIIPIADK- 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  E +  +L +    V  DD  E++  +   A+L   P  ++VG K      V +
Sbjct: 556 --HLEYAETVKQKLLENDIRVELDDRNERMNKKIRDAELQKIPFMLVVGDKEAETGTVAV 613

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + +     + +S++E ++      SN 
Sbjct: 614 REKGKQGSQTLSIDEFVSKIKEIISNK 640


>gi|24213940|ref|NP_711421.1| threonyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|59798590|sp|Q8F6R1|SYT_LEPIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24194795|gb|AAN48439.1|AE011305_9 threonyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 638

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 161/447 (36%), Gaps = 44/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      ++ L +    +   G   W P G    +++   +R E N
Sbjct: 232 LDQYLFQIEEAKKRDHRKIGKEMDLFS--FQKEGPGFPFWHPKGTILWNSLAEYLRSECN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+
Sbjct: 290 KRGYQEIKTPAVLSSELWKKSGHWDNFHENMY-FTDIDEEDYALKPMNCPGCSLIYKHHL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  F +     R EL     G+ R R F   D++ +    +  +     +    
Sbjct: 349 HSYRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIY-APLDYLESEVMDIIDFT 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ + G         + P       E    A +   Q    K         E   +  
Sbjct: 408 FTVYKKFGFSEFKTFIATRPEKSQGKDEDWEFATSTLKQSLEKKGIPYGIKEGEGAFYGP 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I  N                            K    R  + G I      +S+P    
Sbjct: 468 KIEFN---------------------------IKDSIGRLWQCGTI---QVDFSMPERFD 497

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +  +DG K   V +     G++     ++   ++GK  +W   ++P +I ++ +    
Sbjct: 498 LDYTDSDGQKKRPVMIHRAIYGSLERFIGILIEHYEGKFPLW---ISPNQIRILTVT--- 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  + +Y  L   G  V  D   E+IG++   + L      +I+G K +  + + +
Sbjct: 552 EKVTDYAKNVYRELLDSGFRVELDTRNEKIGAKIRDSILKKANYLLILGEKEMESNTLAV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R     + ++    I+       ++
Sbjct: 612 RMRGQEDTKILTRTGFISNLQDEIKSS 638


>gi|167035206|ref|YP_001670437.1| prolyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083507|sp|B0KTK4|SYP_PSEPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166861694|gb|ABZ00102.1| prolyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 571

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S       
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDSSDYAA 231



 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 DVVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|110638045|ref|YP_678253.1| threonyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354610|sp|Q11UK3|SYT_CYTH3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110280726|gb|ABG58912.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 645

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 170/451 (37%), Gaps = 41/451 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L IL+E   RD      +L L      +   G+  WLP G    + +   +++ Q R
Sbjct: 229 KDYLTILEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGALLRERLENFLKKAQVR 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P + +  L+V SG +D YGK+  +        +  +  P +     +I+++ 
Sbjct: 288 AGYQPVVTPHIGNKQLYVTSGHFDKYGKDSFQPIFTPHEGEQFLLKPMNCPHHCEIYKTK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+   
Sbjct: 348 PRSYKDLPIRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFLKVIDL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG      +                  D      +  +D           +  
Sbjct: 407 VLYVFKVLGFNDYTAQISLR--------------DPENKDKYIGEDEQWQKAEQAIIEAS 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
               L+++ E   A +                  K    R  ++G I      Y LP   
Sbjct: 453 AEKGLSTVTELGEAAFYGPKLDF---------MVKDALGRKWQLGTI---QVDYQLPNRF 500

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G+D + H  V +     G++    AV+     G   +W   ++P +I+++ I   
Sbjct: 501 ELEYTGSDNQKHRPVMLHRAPFGSLERFIAVLIEHVAGNFPLW---LSPDQIAILPI--- 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  + +Y RL       F D+  E+IG +    ++   P  +++G K V++ K+ 
Sbjct: 555 SEKFNDYAQDVYDRLLVKDIRGFIDNRDEKIGKKIRDTEVKKVPFMLVIGEKEVNEGKIA 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           I+         M +E+ I Y     +    V
Sbjct: 615 IRKHGGEDLGSMLVEDFIQYFESEIAKQLAV 645


>gi|145297802|ref|YP_001140643.1| prolyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166980094|sp|A4SJ23|SYP_AERS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|142850574|gb|ABO88895.1| prolyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 574

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEVVSHQLMLRAGMIRKLASGMYAWLPSGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITSLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +       +Y +M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKASLIETYERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y   F R+GL   P++A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCAAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGEDLIAFSDTSDYAA 231



 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 3/197 (1%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                      +D+ N    D  P    K +  RGIEVGHIF  GTKYS  M A+     
Sbjct: 376 NWDRDIATYEVADLRNVVEGDPSPCGQGKLLLKRGIEVGHIFQLGTKYSEAMKASVLNEG 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE ++D  GIIWPD++APF+++++ +  H  +   +  
Sbjct: 436 GKSVTMEMGCYGIGVSRLVAAAIEQNNDQYGIIWPDAIAPFEVAIVPMNMHKSERVAEQA 495

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++ YA L   G DV +DD  E+ G  FA  +LLG P  +++G + + +  VE K R +G 
Sbjct: 496 QQFYAELKAAGVDVLFDDRKERPGVMFADMELLGVPHAIVIGDRGLDNGVVEYKCRRSGE 555

Query: 426 REDMSLEEVINYASHRF 442
           ++++++ E++     + 
Sbjct: 556 KQEVAITEIVAMLKAKL 572


>gi|119476901|ref|ZP_01617182.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119449708|gb|EAW30945.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 576

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/225 (54%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +  ++E P DA + SH+LMLR GMI + S G+YSWLP+G + L  V AI+REE
Sbjct: 1   MRASQFLIATVKETPSDAVVISHQLMLRAGMIRKLSSGLYSWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +Q ++LW ESGR+  YG E+LR+ DR++ +   GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAQELLMPVVQPSNLWQESGRWQQYGPELLRITDRHNNSFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y  M  +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHNDQESLQQTYELMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF RLGL+  P+ A++G IGG+ SHEF VLAD+GE  +  S 
Sbjct: 181 YTKIFTRLGLRFRPVVADTGSIGGNASHEFHVLADSGEDDIAFSD 225



 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D                   D+ +    D  P+ K      RGIEVGHIF  G KY+  +
Sbjct: 369 DGYHFIGTNWGRDCKTGRIEDIRDVVAGDPSPDGKGILHIKRGIEVGHIFQLGAKYAEAL 428

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT    +GKD  + MG YGIG  R+VAA IE ++D KGIIWP S+APF+I++I +    
Sbjct: 429 KATVLNENGKDQTILMGCYGIGMTRIVAAAIEQNNDEKGIIWPASIAPFQIAIIPLNMQK 488

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            V   +   K+Y +LS++G +V  DD  E+ G +FA  +L+G P ++++G + + D K+E
Sbjct: 489 SVDVAEQSNKLYQQLSELGYEVLLDDRNERPGVKFADMELIGIPHRIVIGDRGLKDGKME 548

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R     + + +  +I++ +   +
Sbjct: 549 YKGRQDSENQHIDISNIIDFIATSIA 574


>gi|94265181|ref|ZP_01288943.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
 gi|93454322|gb|EAT04629.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
          Length = 572

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 127/281 (45%), Positives = 171/281 (60%), Gaps = 1/281 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR GMI + + G+YS+LPLG  A+  V  I+R+E
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRAGMIRKLTSGVYSYLPLGLAAIRKVEEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFQDRHQRESCLGPTHEEVITDLVRL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD     +  +Y KM  +
Sbjct: 121 NVHSYRDLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDADEAAADETYRKMQAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +   D+    E     
Sbjct: 181 YQRIFARCGLAFRAVEADTGSIGGSFSHEFMVLAATGEDLVVTCQ-HCDYAANLEKATAR 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
              S        +   A        ++ D L   +++  + 
Sbjct: 240 QQQSPEHDDPLPSNEVATPGCKTVAEVCDFLQIPRQMLVKT 280



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 104/192 (54%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+    +  E       + +    RGIEVGHIF  G +YS  ++ATF   +G+  +  MG
Sbjct: 378 YSGDIRMVTEDDNCPRCDGRLAMTRGIEVGHIFKLGNEYSRALNATFLDKEGQSRHFIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            +GIG  R VAA IE +HD  GII+P  +APF++ L+N+   D       +++Y  L+  
Sbjct: 438 CFGIGVSRTVAAAIEQNHDRDGIIFPLPIAPFQVILLNLTPKDPEISAEAQRLYQELTAA 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G++F  ADL+G P++++VG +F  +  +EI++R  G   + +    +
Sbjct: 498 GLEVLLDDRNERPGAKFKDADLIGIPIRLMVGKRFAQEGLLEIRNRADGRSSEATPAAAV 557

Query: 436 NYASHRFSNNRP 447
              +   +   P
Sbjct: 558 AVITEMVAQQLP 569


>gi|332140465|ref|YP_004426203.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|226731424|sp|B4RV73|SYP_ALTMD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|327550487|gb|AEA97205.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 572

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 159/235 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRVKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQVQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL    + A+SG IGG+ SHEF VLA++GE  +  S D         
Sbjct: 181 YCAIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAESGEDAIAFSSDSDYAANVEM 235



 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 103/193 (53%), Gaps = 3/193 (1%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  T D+ N    D+ P+ +      RGIEVGHIF  G KYS  M+       GK 
Sbjct: 380 NWPDGINTVDIRNVVAGDASPDGQGTLDIKRGIEVGHIFQLGRKYSEAMNCGVLSETGKH 439

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKI 368
             + MG YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +  H     ++A E +
Sbjct: 440 QTLTMGCYGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAAEAL 499

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L  +G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ 
Sbjct: 500 YEELVALGIEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQL 559

Query: 429 MSLEEVINYASHR 441
           + L     + +  
Sbjct: 560 LDLSAAKEFVAAL 572


>gi|262052254|ref|ZP_06024459.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
 gi|259159855|gb|EEW44894.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
          Length = 645

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDRYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|242373974|ref|ZP_04819548.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis M23864:W1]
 gi|242348328|gb|EES39930.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis M23864:W1]
          Length = 654

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 169/446 (37%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 238 KAHLQMLEERRERDHRKIGKDLELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 296

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++ + M+  P +      I+ +  
Sbjct: 297 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMKLDETEEMVLRPMNCPHHMMIYNNKP 356

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 357 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 415

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +    R                  D  + + +   D M     S   +  D
Sbjct: 416 QEVYEDFGFEDYTFRLSYR--------------DPEDKEKYMDDDEMWNKAESMLKEAVD 461

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L  +     A  A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 462 EMGLPYVEAIGEA--AFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----ELT 511

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+DG+ H   +   G+ + M    A +     G    W   +AP ++ +I +     +
Sbjct: 512 YIGSDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVEIIPVNV--DI 566

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++ 
Sbjct: 567 HYDYARQLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRK 626

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 627 YGSEDQESLEKDEFIWNLVDEIRLKK 652


>gi|256826891|ref|YP_003150850.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Cryptobacterium
           curtum DSM 15641]
 gi|256583034|gb|ACU94168.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Cryptobacterium
           curtum DSM 15641]
          Length = 586

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 157/444 (35%), Gaps = 50/444 (11%)

Query: 12  QENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +E   +AE   H+ + R     M+     G   WLP G +  + +     E Q   G  +
Sbjct: 184 EELLAEAEKRDHRKIGREMELFMMADEGPGFPFWLPNGMRLKNALTQYWMEMQEAYGYEQ 243

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + S  LW  SG +D Y + M      +D+     P +      I++S  +SYR+L
Sbjct: 244 VDTPIILSRKLWETSGHWDHYKENMYT-TVIDDEDYAVKPMNCPGACLIYKSKPRSYRDL 302

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R EL+    G+ R R F   DA+ F + P+                + +
Sbjct: 303 PLKLAEAGKDHRHELKGALHGLFRVRAFTQDDAHLF-IRPDQITEQVTDTAHLITAYYEQ 361

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P     S E   LA+ G  Q       +D+ +   +  F        
Sbjct: 362 FGFPYR-VELSTRPDDSMGSDEDWALAEEGLRQAL-EAMGVDYTLNEGDGAF-------- 411

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKG 304
                   Y    D H +              R  + G I   F     +       +  
Sbjct: 412 --------YGPKIDFHLQDCLG----------RTWQCGTIQLDFQLPQNF----ELEYTD 449

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +DG K   + +   G G+      ++   + GK   W   ++P ++ ++ +    +  R+
Sbjct: 450 SDGSKKRPILIHRAGFGSFERFIGMLTEQYAGKFPTW---LSPLQVKVLPV---SEKHRE 503

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +I  +L + G  V  D+  E+IG +   A  +   P  +I+G        + ++ R 
Sbjct: 504 YSRQIADKLRQAGVRVKVDERDEKIGYKIREARSVDRVPYMLILGEVEEEAGNISVRDRS 563

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                  SL++ I       S  R
Sbjct: 564 N-ETVQRSLDDFITDIQAEISERR 586


>gi|282881717|ref|ZP_06290380.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281304476|gb|EFA96573.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 655

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 163/450 (36%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLTMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQDMLRNI 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F
Sbjct: 287 QRRYGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    +R E      G+ R R F   DA+ F   P+  K+ + ++
Sbjct: 347 AYKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIF-CRPDQVKNEFLRV 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F      +   +                  D  + + +      D        
Sbjct: 406 MDIIQAVFKIFNFDNFEAQISLR--------------DPKDKEKYIGS---DEVWAESEQ 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D      +  +     AA      +         K    R  ++G I      Y+LP
Sbjct: 449 AIIDACKEKGLDAKVEYGEAAFYGPKLDF------MVKDAIGRRWQLGTI---QVDYNLP 499

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   D  K   V +     G++    AV+     G   +W   + P +++++ I
Sbjct: 500 QRFKLEYTDEDNSKRTPVMVHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAILPI 556

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +       ++  + +        DD  E+IG +    +L   P  VIVG K  +D 
Sbjct: 557 ---SEKYNAYARQVAKQFAAQQVRATIDDRNEKIGRKIRDNELKRVPYMVIVGEKEAADG 613

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ R  G +  + ++E I   ++  + 
Sbjct: 614 LVSMRERGGGEQATLRVDEFIARINNEVAQ 643


>gi|206889512|ref|YP_002249047.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741450|gb|ACI20507.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 617

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 172/447 (38%), Gaps = 43/447 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L   +  +   G+  WLP G      +    ++E  +
Sbjct: 209 QDYLNFLEEVKKRDHRRLGKQLRLFE-ISEEVGPGLIIWLPNGAIVRKIIEDFWKDEHLK 267

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   DLW +SG  D Y + M    + ++ A    P +      +++S ++
Sbjct: 268 AGYQLLYTPHIARLDLWRKSGHLDFYRENMYSPMEIDEIAYQLKPMNCPFHIQVYKSELR 327

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  F ++   +R E      G++R R F   DA+ F  T E  +    K+    +
Sbjct: 328 SYRELPLRFAELGTVYRYERSGVLHGLLRVRGFTQDDAHIF-CTEEQLEEEIQKVLDFTV 386

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    G  +  +   + P     S E    A     +   +++      P E   +   
Sbjct: 387 FILSTFGFTAYDIYISTRPEKYVGSIENWEKATFALEEALKTRNLPYQIDPGEGVFYGPK 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                             K V  R  +   I      +++P     
Sbjct: 447 IDIK---------------------------IKDVLNRSWQCSTI---QVDFNIPERFDI 476

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T++G DGK+H  + +    +G++     V+   + G   +W   +AP +I +++I    +
Sbjct: 477 TYRGKDGKEHRPIMIHRALMGSLERFMGVLIEHYAGAFPLW---LAPVQIEVMSI---SE 530

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++Y +L      V  +   E+IG +   A L   P  VI+G K + ++ + ++
Sbjct: 531 KHADYAARVYRQLINNDFRVKLNIDNEKIGYKIRNATLNKVPYMVIIGDKEIENNAITVR 590

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R     E +  E+ I +  +   + +
Sbjct: 591 KRDGENFELIKFEKFIEFLVNDIKDKK 617


>gi|94267977|ref|ZP_01291052.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
 gi|93451782|gb|EAT02540.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
          Length = 572

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 127/281 (45%), Positives = 171/281 (60%), Gaps = 1/281 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR GMI + + G+YS+LPLG  A+  V  I+R+E
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRAGMIRKLTSGVYSYLPLGLAAIRKVEEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFQDRHQRESCLGPTHEEVITDLVRL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD     +  +Y KM  +
Sbjct: 121 NVHSYRDLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDADEAAADETYRKMQAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +   D+    E     
Sbjct: 181 YQRIFARCGLAFRAVEADTGSIGGSFSHEFMVLAATGEDLVVTCQ-HCDYAANLEKATAR 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
              S        +   A        ++ D L   +++  + 
Sbjct: 240 QQQSPEHDDPLPSNEVATPGCKTVAEVCDFLQIPRQMLVKT 280



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 104/192 (54%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+    +  E       + +    RGIEVGHIF  G +YS  ++ATF   +G+  +  MG
Sbjct: 378 YSGDIRMVTEDDNCPRCDGRLAMTRGIEVGHIFKLGNEYSRALNATFLDKEGQSRHFIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            +GIG  R VAA IE +HD  GII+P  +APF++ L+N+   D       +++Y  L+  
Sbjct: 438 CFGIGVSRTVAAAIEQNHDRDGIIFPLPIAPFQVILLNLTPKDPEISAEAQRLYRELTAA 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G++F  ADL+G P++++VG +F  +  +EI++R  G   + +    +
Sbjct: 498 GLEVLLDDRNERPGAKFKDADLIGIPIRLMVGKRFAQEGLLEIRNRADGRSSEATPAAAV 557

Query: 436 NYASHRFSNNRP 447
              +   +   P
Sbjct: 558 AVITEMVAQQLP 569


>gi|289830168|ref|ZP_06547590.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 282

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231


>gi|223044090|ref|ZP_03614129.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442484|gb|EEE48590.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 645

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 168/446 (37%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERRERDHRKIGKDLELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y  +M      ++ + M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQDDMFPPMKLDETEEMVLRPMNCPHHMMIYNNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K    R                  D  + + +   D M     S   +  D
Sbjct: 407 QEVYEDFGFKDYTFRLSYR--------------DPEDKEKYMDDDEMWNKAESMLKEAVD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L  +     A  A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 EMGLPYVEAIGEA--AFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+DG+ H   +   G+ + M    A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGSDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVEIIPVNV--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++ 
Sbjct: 558 HYDYARQLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRQ 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSQDQETLEKDEFIWNLVDEIRLKK 643


>gi|117619295|ref|YP_858106.1| prolyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|152074744|sp|A0KPA5|SYP_AERHH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117560702|gb|ABK37650.1| prolyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 574

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEIVSHQLMLRAGMIRKLASGMYAWLPSGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITSLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +       +Y +M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKASLIETYERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y   F R+GL   P++A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCAAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGEDLIAFSDTSDYAA 231



 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              + K +  RGIEVGHIF  GTKYS  M A+     GK   ++MG YGIG  R+VAA I
Sbjct: 399 PCGQGKLLLKRGIEVGHIFQLGTKYSEAMKASVLNEGGKSVTMEMGCYGIGVSRLVAAAI 458

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E ++D  GIIWP+++APF+++++ +  H  +   +  ++ YA L   G DV +DD  E+ 
Sbjct: 459 EQNNDQYGIIWPEAIAPFEVAIVPMNMHKSERVAEQAQQFYAELKAAGVDVLFDDRKERP 518

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G  FA  +LLG P  +++G + + +  VE K R TG ++++++ E++     + 
Sbjct: 519 GVMFADMELLGVPHAIVIGDRGLDNGVVEYKCRRTGEKQEVAISEIVALLKAKL 572


>gi|313205743|ref|YP_004044920.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Riemerella
           anatipestifer DSM 15868]
 gi|312445059|gb|ADQ81414.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Riemerella
           anatipestifer DSM 15868]
 gi|315022861|gb|EFT35885.1| threonyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
          Length = 641

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 164/444 (36%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E  R D      +L L T    +   G+  WLP G      + + + E Q +
Sbjct: 227 KEYLERLEEAKRRDHRKLGKELGLFT-FSEKVGAGLPLWLPKGAALRKKLESFLSEAQRK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P + + +L+  SG Y+ YG +  +        +  +  P +     +++++ 
Sbjct: 286 GGYEFVMTPHIGNIELYKTSGHYEKYGADSFQPIKTPHVGEEFLLKPMNCPHHCEVYKAQ 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+   
Sbjct: 346 QWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CTPDQLLEEFEKVIDL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG +    +                  D      +   +       S      
Sbjct: 405 VLYVFKSLGFEDFIAQVSLR--------------DKENRAKYIGSEENWEKAESAIITAA 450

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
               LN++VE   A +                  K    R  ++G I      Y+LP   
Sbjct: 451 KNKGLNTVVEYGEAAFYGPKLDF---------MVKDALGRSWQLGTI---QVDYNLPERF 498

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G+D + H  + +     G+M    A++  +  G   +W   + P +  L+ I   
Sbjct: 499 DLTYVGSDNERHRPIMIHRAPFGSMERFIAILIENTAGDFPLW---LNPDQYILLPI--- 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  +K+   L         D+  E+ G +   A++   P  +IVG     +  V 
Sbjct: 553 SEKYTDYAKKVSQLLENHDICGLVDERNEKTGKKIRDAEMKKIPFMLIVGENEAGNQTVS 612

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R  G   +MS+E  + Y  + 
Sbjct: 613 VRKRGEGDLGEMSIESFVEYFKNE 636


>gi|229823243|ref|ZP_04449312.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
 gi|229787409|gb|EEP23523.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
          Length = 647

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 168/444 (37%), Gaps = 36/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL + QE   RD      +L +   +  +   G+  WLP G      +   I +++   G
Sbjct: 231 FLRLRQEAKERDHRKLGKELGIFM-VSKEVGSGLPFWLPKGATIRRVIERYIMDKEISLG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P +   DL+  SG +  Y  +M    D  D  M +  P +      I+++ I S
Sbjct: 290 YDHVYTPIMAKVDLYQTSGHWAHYKDDMFPPMDMGDGEMLVLRPMNCPHHMMIYKNDIHS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + DA+ F + P+  K  + ++      
Sbjct: 350 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDAHIF-VRPDQIKEEFIRVLDLIKA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++H  G+     R                  D    + +   D M     +   +  D +
Sbjct: 409 VYHDFGITDYRFRLSYR--------------DPENKEKYFDDDAMWEKAQAMLKEAMDEL 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+    +     A      + +   ++   + +S   ++    F    ++      T+ 
Sbjct: 455 GLD--YFEAIGEAAFYGPKLDIQFKTAIGLEETMSTIQLD----FLLPERF----DLTYV 504

Query: 304 GADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DG+     V +    +  M    A +   + G    W   +AP +++L+ +    +  
Sbjct: 505 GEDGQDNHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQVALLPVSL--EAH 559

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++IY  L   G  V  D   E++G +   A     P Q+++G + VS+  V ++H 
Sbjct: 560 SDRVQEIYEDLKAKGFRVDMDLRNEKLGYKIRSAQTAKIPYQIVIGDQEVSEGTVNVRHY 619

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E  S ++ +   S   +N 
Sbjct: 620 GSAKSESYSYDDFVRLLSEDVANK 643


>gi|270264794|ref|ZP_06193058.1| prolyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270041092|gb|EFA14192.1| prolyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 572

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVCMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLPLPQVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVLTMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SFRVQALAEELYNTLRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSEEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E++++   +  
Sbjct: 546 YKNRRVGEKQMIKTGEIVDFLLGQIK 571


>gi|134282011|ref|ZP_01768717.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134246540|gb|EBA46628.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 681

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 146/437 (33%), Gaps = 39/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G   W P G      + A +R  Q   G
Sbjct: 243 YIQRMEEAEKRDHRKLGRELDLF--HFQEDAPGAVFWHPRGWAVFQELIAYMRRRQQDAG 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG + +Y   M      + +A+   P +      ++R  +KSY
Sbjct: 301 YVEVNSPDVMDRSLWEISGHWQNYRDHMFTTETEDGRALALKPMNCPGSALLYRHGLKSY 360

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ +  TP+       ++    L I
Sbjct: 361 RDLPIRMGEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIY-CTPQQMDAECREVVTLVLDI 419

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++  + P     +       +    Q            P E         
Sbjct: 420 YRQFGFDEVRIKLSTRPENRMGTDATWDQLEGTLVQALEGMGLQYHLKPGEG-------- 471

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A         L D++  + +     +++     FG          +  
Sbjct: 472 ------------AFYGPKLEFVLRDAIGRDWQCGTLQVDMNLPERFG--------IEYVD 511

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+    V +     G++     ++   H G+  +W   +AP +  +++I    +    
Sbjct: 512 EDGQRKRPVMLHRALFGSLERFTGILIEHHAGRLPVW---LAPLQAIVLSIT---EAHGA 565

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L   G     D   E IG +     L   P  ++VG+K      V I+ R  
Sbjct: 566 YAQDVARLLRGAGLRAEADIRNETIGYKIREQTLQRIPFLLVVGAKERDAGAVAIRTRNG 625

Query: 424 GIREDMSLEEVINYASH 440
                + L + +     
Sbjct: 626 DDLGVLPLTQAVARLLQ 642


>gi|314933837|ref|ZP_07841202.1| threonine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653987|gb|EFS17744.1| threonine--tRNA ligase [Staphylococcus caprae C87]
          Length = 645

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 168/446 (37%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERRERDHRKIGKDLELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y  +M      ++ + M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQDDMFPPMKLDETEEMVLRPMNCPHHMMIYNNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K    R                  D  + + +   D M     S   +  D
Sbjct: 407 QEVYEDFGFKDYTFRLSYR--------------DPEDKEKYMDDDEMWNKAESMLKEAVD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L  +     A  A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 EMGLPYVEAIGEA--AFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+DG+ H   +   G+ + M    A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGSDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVEIIPVNV--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++ 
Sbjct: 558 HYDYARQLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRQ 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSQDQETLEKDEFIWNLVDEIRLKK 643


>gi|192359534|ref|YP_001982928.1| prolyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|190685699|gb|ACE83377.1| prolyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 611

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 133/308 (43%), Positives = 180/308 (58%), Gaps = 3/308 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 37  MRSSRFLIATLKETPADAEVISHQLMLRAGMIRKMASGLYNWLPLGLRVLRKVETIVREE 96

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV+TD+ R+
Sbjct: 97  MNKSGAMEVLMPVVQPAELWEESGRWQQYGPELLRITDRHDRPFCLGPTHEEVITDLIRN 156

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF LT E  + +Y+ M  +
Sbjct: 157 ELKSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLTQESLQQTYDVMHTT 216

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S          +     
Sbjct: 217 YCNIFSRLGLGYRPVLADTGSIGGAYSHEFHVLADSGEDYIVFSNGSDYAANIEKAEALP 276

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +                 E         ++     I +G     G   S P+ A
Sbjct: 277 PAAPRPAPQHVLQEVATPGQHAIEEVCAFLKVSAQQTVKTLIVLGETREDG---SQPLVA 333

Query: 301 TFKGADGK 308
                D +
Sbjct: 334 LVLRGDHE 341



 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D   L  +  +        +D+ N    D  P  K      RGIEVGHIF  GTKYS  M
Sbjct: 404 DGFHLTGVNWERDEQAPLVADIRNVVTGDPSPCGKGTLEIKRGIEVGHIFQLGTKYSDAM 463

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
            A     +GK+  + MG YGIG  RVVAA IE + D  GIIWPD++APF I+++ I    
Sbjct: 464 KARVLDENGKEQTMIMGCYGIGVTRVVAAAIEQNFDDNGIIWPDAIAPFHIAIVPINMAK 523

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +     CE++YA+LS  G DV   D  + ++G   A  DL+G P +++VG + +    +
Sbjct: 524 SEAVATKCEELYAQLSAAGLDVLLMDEDKARLGVMLADTDLMGIPHRIVVGDRGLEAGSI 583

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R    ++++++ +++ +   +  
Sbjct: 584 EYKGRRDAEKQEIAVGDIVEFLKAQVK 610


>gi|292491210|ref|YP_003526649.1| prolyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291579805|gb|ADE14262.1| prolyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 575

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR G I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGGFIRRLAAGLYTWLPLGLRVLRKVEGIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEILMPAVQPAELWQETGRWEQYGPELLRFTDRHQRPFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ+KFRDE+RPRFGVMR+REFLMKDAYSF L     + +Y +M+ +
Sbjct: 121 EIRSYKQLPANFYQIQVKFRDEIRPRFGVMRAREFLMKDAYSFHLDQTSLEQTYQQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GL    ++A++G IGG  SHEF VLA +GE  +  S 
Sbjct: 181 YSRIFERIGLTFRAVQADTGAIGGQTSHEFHVLAASGEDAIAFSD 225



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 3/202 (1%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             +   P   T+D+      D  P+ +     ARGIEVGHIF  G KYS  M+ T     
Sbjct: 371 NWERDLPEPITADIRKVVDGDPSPDGEGFLSIARGIEVGHIFQLGEKYSQAMNTTVLDET 430

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDAC 365
           G+   + MG YGIG  RVVAA IE +HD  GIIWPD +APF+++L+ I AH  V  R+  
Sbjct: 431 GQAIILTMGCYGIGVSRVVAAAIEQNHDEHGIIWPDPIAPFQLALVPINAHKSVRVRETA 490

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++Y++L   G +V  DD   + G  F   DL+G P ++++  + +    VE K R  G 
Sbjct: 491 DQLYSQLQAAGFEVLLDDRQLRPGVIFTDMDLIGIPHRLVISDRGLDAGTVEYKRRRDGK 550

Query: 426 REDMSLEEVINYASHRFSNNRP 447
              + L+ +I           P
Sbjct: 551 TSTIQLDNLIPGLKSELKTPIP 572


>gi|322657154|gb|EFY53437.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322686289|gb|EFY82273.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
          Length = 277

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAA 231


>gi|226942102|ref|YP_002797176.1| prolyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|226717029|gb|ACO76167.1| Syp [Laribacter hongkongensis HLHK9]
          Length = 569

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL  L+E P +AE+ SHKLMLR GMI + S G+Y+W+PLG + L  V AI+REE
Sbjct: 1   MRASQYFLSTLKEAPNEAELPSHKLMLRAGMIKRLSSGLYTWMPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR+ DR+++    GPTHEEV+TD  R 
Sbjct: 61  MNRAGAIELLMPAIQPAELWQESGRWEFYGKELLRVKDRHERDFCVGPTHEEVITDAVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  K +Y  M+ +
Sbjct: 121 EVKSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDFDSLKATYQGMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R+F RLGL   P+ A++G IGG  SHEF VLAD+GE  +   
Sbjct: 181 YCRVFTRLGLDFRPVAADTGSIGGTGSHEFQVLADSGEDVIAYC 224



 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           D + L  +      P    +D+ N    D  P+ +      RGIEVGH+F    KY+  M
Sbjct: 363 DDVHLTGVNFGRDCPEPEVADLRNVVEGDPSPDGQGEIRLCRGIEVGHVFQLRKKYAEAM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
              F   DGK   ++MG YGIG  RVVAA IE   D +GII+ D++APF +S++ +    
Sbjct: 423 DCGFLDQDGKRQIMEMGCYGIGVSRVVAAAIEQGFDERGIIFTDAMAPFTVSIVPMGYRR 482

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A + +YA L   G DV  DD  E+ G   A ++L+G P +V++G + + + KVE
Sbjct: 483 SESVKAAADALYAELVAAGVDVLLDDRDERPGVLLADSELIGIPHRVVIGDRGLKEGKVE 542

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            + R       + + E+  +   + +
Sbjct: 543 YQGRRETEATSVEVAEIAAFVRSKLA 568


>gi|296101364|ref|YP_003611510.1| prolyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055823|gb|ADF60561.1| prolyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 572

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSHESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAA 231



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +   +  RGIEVGHIF  G KYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGDKYSRAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A  +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 NAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDNIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SYRVQELAEKLYAELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G ++ +   ++++Y      
Sbjct: 546 YKYRRSGEKQMIKTGDILDYLVKAIK 571


>gi|86134203|ref|ZP_01052785.1| Threonyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821066|gb|EAQ42213.1| Threonyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 647

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 155/435 (35%), Gaps = 40/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +   G+  WLP G    + +   ++  Q + G   +  P
Sbjct: 238 AKKRDHRKLGKELELFT-FSQKVGAGLPLWLPKGAALRERLQNFLKAAQKKAGYEMVMTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y+ YG++  +     + D+  +  P +     +++     SY++LP 
Sbjct: 297 HIGQKELYVTSGHYEKYGEDSFQAIKTPKMDEEFLLKPMNCPHHCEVYNFKPYSYKDLPK 356

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     + ++    L +F  LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQLDQEFKEVIDLVLYVFGSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            +    +     +                 +     +  +    +  +   D      I 
Sbjct: 416 FEDFTAQVSIRDM-------------ENLDKYIGDVETWEIAENAIISAAKDKGLDYVIE 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
           E   A Y    D   +              R  ++G I      Y+LP     T+ G+D 
Sbjct: 463 EGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPKRFDLTYTGSDN 509

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    AV+     G   +W   + P ++ ++ I    Q      E
Sbjct: 510 QSHRPVMIHRAPFGSMERFIAVLLEHTGGNFPLW---LTPEQVIILPISDKYQK---YTE 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L         DD  E+ G +   A++   P  VIVG K   D  V ++    G  
Sbjct: 564 KVLESLENSEIRALVDDRSEKTGRKIRDAEVSKIPFMVIVGEKEEQDGTVSVRKHGEGDI 623

Query: 427 EDMSLEEVINYASHR 441
              ++EE  +     
Sbjct: 624 GTFTIEEFKSLIKEE 638


>gi|238754780|ref|ZP_04616131.1| Prolyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238706940|gb|EEP99306.1| Prolyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 572

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GM+ + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMVRKLASGLYTWLPTGIRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL   P+ A++G IGGD SHEF VLAD+GE  +  S
Sbjct: 181 YNRIFSRMGLDFRPVLADTGSIGGDASHEFQVLADSGEDDIVFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLPLPPVADLRNVVEGDISPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMAMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G +V  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYATLRTKGIEVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++ +   E+I +   +  
Sbjct: 546 YKNRRTGEKQMIKTSEIIEFLLSQIK 571


>gi|116252274|ref|YP_768112.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|123261550|sp|Q1MGA7|SYT_RHIL3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115256922|emb|CAK08016.1| putative threonyl-tRNA synthetase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 661

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 150/445 (33%), Gaps = 49/445 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + A +R     
Sbjct: 234 YLHML----AEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRVFQTLVAYMRRRLAG 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 290 -DYQEVNAPQVLDKSLWETSGHWGWYRDSMFKVTVAGDDTDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   + ++  + P     S E    A++    V  +             
Sbjct: 408 NDLILSVYKDFGFDEVTIKLSTRPDKRVGSDELWDRAESVMMGVLETIQQ---------- 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                   N+I         A      E         K    R  + G        ++LP
Sbjct: 458 ------QSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNLP 502

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +  ++  K   V +     G+M     ++  +  G   +W   V+P ++ +  I
Sbjct: 503 ERFGAFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---VSPLQVVVATI 559

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++   L + G +V  D   E+I  +     +   P+ ++ G K   + 
Sbjct: 560 TS---EADAYGLEVAEALREAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAEER 616

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
            V I+   +  +  M L+  +   +
Sbjct: 617 TVNIRRLGSQDQVSMGLDAAVESLA 641


>gi|87198229|ref|YP_495486.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123749972|sp|Q2GBX1|SYT_NOVAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87133910|gb|ABD24652.1| Ser-tRNA(Thr) hydrolase [Novosphingobium aromaticivorans DSM 12444]
          Length = 664

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 144/450 (32%), Gaps = 48/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD     +++ L    + Q + G   W P G      + A +R   +  G 
Sbjct: 240 LTRLEEAAKRDHRKLGNEMDLF--HLQQEAHGSVFWHPKGYLIWRELEAYMRRAIDGAGY 297

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
            E+  P +  A  W +SG +  Y + M  + D              +   M   P +   
Sbjct: 298 REVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNVDDEGPIVSNDADWMALKPMNCPA 357

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR  IKSYR LP   Y+     R+E      G+MR R+F   DA+ F    +    
Sbjct: 358 HVLIFRQGIKSYRELPLRLYENGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CREDQIVS 416

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     RI+   G     ++    P     + E   + D  E ++  +        
Sbjct: 417 EVQAFCELADRIYKHFGFTY-SIKLALRPEKRFGTEE---MWDKAERELRDAVVRAGLAT 472

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                +           +       A                     R  +VG I     
Sbjct: 473 EEYGWEELPGEGAFYAPKLEWHLTDA-------------------IGRTWQVGTI-QSDR 512

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H  V +     G+      ++     G+  +W   +AP +  +
Sbjct: 513 VLPERLDASYIGEDGEKHRPVMLHRAIFGSYERFIGILIEHFAGRLPVW---LAPVQAVV 569

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             I +      D      A+L   G     D   E+I  +     L   P  ++VG +  
Sbjct: 570 ATIVSD---ADDYARDALAKLKAAGIRADTDLRNEKINYKVREHSLQKVPYLLVVGKREA 626

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  V I+      ++ M L+E I      
Sbjct: 627 EEGTVAIRILGEQHQKVMPLDEAIALLKGE 656


>gi|330950620|gb|EGH50880.1| prolyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 571

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 161/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225



 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|260893515|ref|YP_003239612.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865656|gb|ACX52762.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 637

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 146/430 (33%), Gaps = 42/430 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L +    +   G   + P G    + + A+ R E  R G  E+  P L  
Sbjct: 242 DHRRLGQELDLFS--FQEEGPGFPFFHPKGMIVRNELEALWRREHYRRGYQEIRTPILLK 299

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +LW  SG +D Y + M  L + + +     P +      I++  + SYR LP    ++ 
Sbjct: 300 RELWERSGHWDHYKENMYFL-EIDGQPYAVKPMNCPGAILIYQQRVHSYRELPLRLAEMG 358

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIP 194
           L  R EL     G+MR R F   DA+ F    +  K     +       + +  G     
Sbjct: 359 LVHRHELSGVLHGLMRVRSFTQDDAHIF-CREDQVKEEILGIIDLVDYFYRQVFGFPY-H 416

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P           LA +   +    + F                    I E   A
Sbjct: 417 VELSTRPEKSMGDDHIWELATSALKEALEERGFA-----------------YKINEGEGA 459

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQ 313
            Y    D H E              R  + G I              + G DG+ H  V 
Sbjct: 460 FYGPKIDFHLEDCLG----------RTWQCGTI-QLDFLMPEKFDLFYIGEDGQRHRPVM 508

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +     G++    A++     G   +W   +AP ++ ++ I            +IY  LS
Sbjct: 509 LHRVIFGSLERFMAILIEHFAGAFPLW---LAPVQVRILPIT---DRHHAYARQIYELLS 562

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +    V  D   E++  +   A +   P  +++G K ++   V ++HR  G    M+ E 
Sbjct: 563 RADLRVELDARNEKVSYKVREAQVQKIPYMLVIGDKEMNSGTVAVRHRSRGDLGAMTPEA 622

Query: 434 VINYASHRFS 443
            +        
Sbjct: 623 FLEKVREEIR 632


>gi|82751271|ref|YP_417012.1| threonyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123768508|sp|Q2YTA7|SYT_STAAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82656802|emb|CAI81231.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus RF122]
          Length = 645

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKTPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|331007686|ref|ZP_08330821.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418506|gb|EGG93037.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 579

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 158/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR G++ + + G+Y+W+PLG + L  V  IIREE
Sbjct: 1   MRASRFLLSTSKETPADAEVISHQLMLRAGLVRKLASGLYTWMPLGLRVLRKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNKSGAQEVLMPVVQPAELWQESGRWQEYGPELLRIKDRHQREFCLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF +     + +Y+ M  +
Sbjct: 121 DVNSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHIDQASLQDTYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R+GL   P+ A++G IGG  SHEF VLA +GE  +  S 
Sbjct: 181 YCNIFDRIGLDYRPVIADNGSIGGSGSHEFHVLASSGEDDIAFSD 225



 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 4/202 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSAT 301
               +  +         D+ N  + D  P  K      RGIEVGHIF  GTKYS  M+AT
Sbjct: 376 HFTGVNWERDCDLGEVVDIRNVMVGDPSPCGKGTLDIKRGIEVGHIFQLGTKYSESMNAT 435

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQV 360
               +GK   + MG YGIG  RVVAA IE +HD  GIIWP ++APF+++LI I AH    
Sbjct: 436 VLDQNGKAQAITMGCYGIGVTRVVAAAIEQNHDDNGIIWPSALAPFQVALIPINAHKSAA 495

Query: 361 CRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             + C+ +Y  L   G DV + D+   ++G   A  +L+G P +++VG + + + +VE K
Sbjct: 496 VSEKCDVLYKELQAAGYDVIYMDEPKARLGVMLADTELVGIPHRIVVGDRGLENGQVEYK 555

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R    ++++    V+++ + +
Sbjct: 556 GRRDSEKQEIDAGSVVDFLTAQ 577


>gi|313887217|ref|ZP_07820913.1| threonine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923446|gb|EFR34259.1| threonine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 650

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 166/450 (36%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      +L L      +  +G+  WLP G +    +   ++  
Sbjct: 229 KLLDEYLALLEEAKKRDHRKIGKELELFA-FSQRVGQGLPLWLPRGTQLRLKLEDFLKRI 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  ++  P + + +L+  SG Y  YG +  ++    +  +A +  P +     +I+
Sbjct: 288 QKRYGYQQVMTPHIGNVELYKTSGHYAKYGADSFQVITTPQEGEAFMLKPMNCPHHCEIY 347

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           R    SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+
Sbjct: 348 RLKPHSYRDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFLKV 406

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 IF  L  ++   +                 + T  ++   S++  D    +   
Sbjct: 407 MDIIFIIFRALDFENFEAQISLR-------------SQTDRSKYIGSEENWDRAEQAIIE 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +      +     A Y    D   +              R  ++G I      Y+LP
Sbjct: 454 ACQEAGLPAHVEYDEAAFYGPKLDFMVKDALG----------RRWQLGTI---QVDYNLP 500

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G D + H  V +     G+M    AV+     GK  +W   +AP ++ ++ +
Sbjct: 501 ERFDLEYTGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LAPDQVVILPV 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   +   ++ A LS+    V  DD  E++G +    +L   P  +IVG +  +D 
Sbjct: 558 ---SERFNEYANEVAAALSEHDISVSIDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADG 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ +  G      +            +
Sbjct: 615 TVSVRKQGEGDVGTEKISTFAERILQEIES 644


>gi|330968902|gb|EGH68968.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 571

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 161/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|323137534|ref|ZP_08072611.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322397160|gb|EFX99684.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 643

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 155/433 (35%), Gaps = 45/433 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G   W P G      + + +R  Q  
Sbjct: 232 YLHRLEE----AERRDHRRLGREMDLFHFQEEGPGAIFWHPKGWTLFQTLVSYMRRRQKA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P +    LW  SG + +Y + M      +++     P +      IF++ +K
Sbjct: 288 AGYTEVNTPQVLDRALWETSGHWQTYRENMFVTKTEDERIFALKPMNCPGHVQIFKNGLK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R E      G+MR R F   DA+ F  + +       K+    L
Sbjct: 348 SYRDLPVKIAEFGVVHRYEPSGALHGMMRVRAFTQDDAHIF-CSEDQIMDEALKINDLIL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   + ++  + P     S E    A+    +V                   D 
Sbjct: 407 TIYRDFGFDDVVVKLSTRPEKRVGSDEAWDKAEAALGKVL------------------DE 448

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           ++   +         A      E         +    R  + G        ++LP    A
Sbjct: 449 LARRGLKTSIQEGEGAFYGPKLEYTL------RDAIGREWQCGTT---QVDFNLPVRFGA 499

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD  K   V +     G++     ++     G   +W   ++P +I +  I    Q
Sbjct: 500 FYIGADSDKKIPVMIHRAMFGSLERFTGILIEHFAGHLPLW---LSPLQIVICTIT---Q 553

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++ A   K+G +V  D   E+I  +     L   P+ ++ G K  ++  + I+
Sbjct: 554 EADDYAYEVAAAARKLGLNVDIDARNEKITYKVREHSLAKVPVLLVAGKKEAAERTISIR 613

Query: 420 HRLTGIREDMSLE 432
              +  +  M ++
Sbjct: 614 RLGSQQQTQMGID 626


>gi|330975337|gb|EGH75403.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 571

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 161/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|167907142|ref|ZP_02494347.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
          Length = 670

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 146/437 (33%), Gaps = 39/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G   W P G      + A +R  Q   G
Sbjct: 232 YIQRMEEAEKRDHRKLGRELDLF--HFQEDAPGAVFWHPRGWAVFQELIAYMRRRQQDAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG + +Y   M      + +A+   P +      ++R  +KSY
Sbjct: 290 YVEVNSPDVMDRSLWEISGHWQNYRDHMFTTETEDGRALALKPMNCPGSALLYRHGLKSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ +  TP+       ++    L I
Sbjct: 350 RDLPIRMGEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIY-CTPQQMDAECREVVTLVLDI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++  + P     +       +    Q            P E         
Sbjct: 409 YRQFGFDEVRIKLSTRPENRMGTDATWDQLEGTLVQALEGMGLQYHLKPGEG-------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A         L D++  + +     +++     FG          +  
Sbjct: 461 ------------AFYGPKLEFVLRDAIGRDWQCGTLQVDMNLPERFG--------IEYVD 500

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+    V +     G++     ++   H G+  +W   +AP +  +++I    +    
Sbjct: 501 EDGQRKRPVMLHRALFGSLERFTGILIEHHAGRLPVW---LAPLQAIVLSIT---EAHGA 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L   G     D   E IG +     L   P  ++VG+K      V I+ R  
Sbjct: 555 YAQDVARLLRGAGLRAEADIRNETIGYKIREQTLQRIPFLLVVGAKERDAGAVAIRTRNG 614

Query: 424 GIREDMSLEEVINYASH 440
                + L + +     
Sbjct: 615 DDLGVLPLTQAVARLLQ 631


>gi|204636657|gb|ACI01751.1| putative threonyl-tRNA synthetase [Escherichia coli]
          Length = 652

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L    E   +AE   H+ + R         ++ G   W P G     ++ A +R 
Sbjct: 235 ASKKQLDGWLEKTAEAEKRDHRKLGRELDLFHFQDNAPGAVFWHPRGWTIFQSLIAYMRS 294

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G +E++ P +    LW  SG +D+Y   M      + +     P +      +F+
Sbjct: 295 RHEVAGYVEVNTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFK 354

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             IKSYR+LP    +     R E      G++R R F   DA+ F  T +  +     + 
Sbjct: 355 YGIKSYRDLPVRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTLQQVEGECKSIL 413

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I+ + G + + ++  + P     S       +   +    ++       P E   
Sbjct: 414 QLVLDIYKQFGFEEVAIKLSTRPEKRMGSDADWDRLENALSASLEAQGLQWSVNPGEGAF 473

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               +    R  + G         +LP 
Sbjct: 474 YGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDMNLPE 503

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG     V +     G++     ++   + GK   W   ++P +  ++ I 
Sbjct: 504 RFDIGYIAEDGSTKRPVMLHRALFGSLERFTGILLEHYVGKLPAW---LSPVQAVVMTIT 560

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++   L K G     D   E+IG +     L   P  +IVG    + ++
Sbjct: 561 DKQHH---YAEQVLKALRKKGLRCEADLRNEKIGFKIREQTLARIPYLLIVGDAEENAAR 617

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           V ++ R       + L E  +   
Sbjct: 618 VTVRDRTGRCMGTLLLNEAADAIK 641


>gi|329113775|ref|ZP_08242547.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696901|gb|EGE48570.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 640

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 150/438 (34%), Gaps = 41/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + R          + G   W P G      + A +R  Q   
Sbjct: 227 LAAWEQRQEEAARRDHRRLGREMDLFHFQPEAPGAVFWHPNGWTLFQTLLAYLRARQQAE 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             +E++ P +    LW  SG ++ +G+ M    +   +     P +      +FR  +KS
Sbjct: 287 NYVEINTPDIMDLSLWQASGHWEKFGENMFT-TETEGRTYALKPMNCPGGVQVFRHGLKS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G+MR R F   DA+ F  TPE  +    ++    L 
Sbjct: 346 YRDLPLRMAEFGKVHRFEPSGALHGLMRVRAFTQDDAHIF-CTPEQMEAETQRICHLVLS 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+   G  ++ ++    P     S E    ++    +   +        P E        
Sbjct: 405 IYKDFGFNNVRIKFSDRPEKRVGSDEIWDRSEDALRRGVEASGLSYTRNPGEG------- 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A         L D++  + +     +++               A + 
Sbjct: 458 -------------AFYGPKLEFVLRDAIGRDWQCGTVQVDLNLPQRL--------DAHYV 496

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG  H   M      G++     ++   H G    W   +AP ++ +  I A      
Sbjct: 497 GADGDKHPPVMLHRALFGSLERFIGILLEHHAGHLPFW---LAPVQVVVATITA---AAD 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L + G  V  D   E+I  +     L   P+ +IVG K      V I+   
Sbjct: 551 EYADDLIKALRQRGVRVVPDLRNEKIAYKIREHSLAKVPVLLIVGKKEAQAGTVSIREYG 610

Query: 423 TGIREDMSLEEVINYASH 440
                 +++E  IN  + 
Sbjct: 611 NPDAPTIAMETAINLLAD 628


>gi|282855610|ref|ZP_06264924.1| threonine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282586540|gb|EFB91794.1| threonine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 640

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 158/447 (35%), Gaps = 46/447 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H    G   + P G   ++ + +  R      G
Sbjct: 227 YITRMEEARRRDHRKLGKELDLFS--LHNEGVGFPFFHPKGMVVMNKLMSFWRRLHFLNG 284

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E   P + + DLW+ SG +D Y + M      +D      P +      I+++   SY
Sbjct: 285 YTEARTPQILNRDLWLRSGHWDHYRENMY-FTTIDDIPHAIKPMNCPGGIIIYKTSKHSY 343

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R EL     G+MR R F   DA+ F  TPE  K     +      +
Sbjct: 344 RELPIRMGELGVVHRHELSGALHGLMRVRCFTQDDAHHF-CTPEQIKDEVKLIMKLNDYV 402

Query: 185 F-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           + H  G K   +   + P     S E   +A+   ++            P +   +   I
Sbjct: 403 YTHVFGFKY-HVELSTRPENSMGSDELWEIAENALSETLAETGTPYVLNPGDGAFYGPKI 461

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
                                          +    R  + G I      +++P     T
Sbjct: 462 DF---------------------------HLEDCIGRTWQCGTI---QLDFTMPEKFDMT 491

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG++H  V +    +G++     ++  ++ G    W   +AP ++ L+ +      
Sbjct: 492 YVGADGREHRPVMLHRTILGSIERFMGILIENYAGAFPYW---LAPVQVKLLAV---SDD 545

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++  +L  +   V  D   E++G +   A +   P  +++G K V    V ++ 
Sbjct: 546 HLPYAREVAEKLQNLNVRVEIDRRDEKLGRKIRDAQMEKVPYMLVIGDKEVEARTVAVRD 605

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRP 447
           R  G    M         + ++   + 
Sbjct: 606 RAKGDLGSMDFAAFTGLLAEQYDPEKE 632


>gi|220934623|ref|YP_002513522.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|259516780|sp|B8GRI1|SYT_THISH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219995933|gb|ACL72535.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 643

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 151/443 (34%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L +  I +    G+  W P G +    +     +   R 
Sbjct: 231 YLHRLAEAERRDHRRIGTELNLFS--IQEDAGGGLVFWHPKGARIRRAIEQFWFDMHERA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG  D Y + M    + +++A    P +      +++  + S
Sbjct: 289 GYQFLYTPHIANLDLWKTSGHADFYSESMYEPMEDDNQAFQLKPMNCPFHVLVYKDRLHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + ++   +R E+     G+MR R F   DA+ F    +  +    ++    L 
Sbjct: 349 YRDLPLRWAEMGTVYRREMSGALHGLMRVRGFTQDDAHIF-CREDQIEAEILRILDLTLE 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G     +   + P     S +    A          K                  
Sbjct: 408 VLQAFGFDDFDVNLSTRPDKAVGSDQIWEHATAALKAALEKKGLDYSVDEGGG------- 460

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++       + 
Sbjct: 461 -------------AFYGPKIDIKIRDAIGREWQCSTVQLD----FNLPERF----EMEYV 499

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             D  +   + +    +G++     V+   + G   +W   +AP ++ ++ I        
Sbjct: 500 AEDNSRRRPIMIHRALLGSVERFFGVLIEHYAGSFPLW---LAPVQVQVLTIT---DRQD 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  RL   G     D   E+IG +     L   P  +++G + +  + V ++ R 
Sbjct: 554 DYAREVADRLRNRGIRADADLRNEKIGFKIREHTLQRVPYLLVLGDREMETNTVAVRTRS 613

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M L ++    +   ++ 
Sbjct: 614 GEDLGSMDLNQLSERLAGEIASR 636


>gi|227122|prf||1614347A Pro-tRNA synthetase
          Length = 572

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+L++R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLIVRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGQASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  + + +  RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG  GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCTGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|88657649|ref|YP_506841.1| threonyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123750088|sp|Q2GI92|SYT_EHRCR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88599106|gb|ABD44575.1| threonyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 633

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 156/437 (35%), Gaps = 44/437 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +++   RD      +L L    I   + G   W   G      +   IR++    G
Sbjct: 231 YLNNLIEAEKRDHRKIGRELELF--HIQNEACGQIFWHTKGWTIYRIIENYIRKKLENNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P L + +LW +SG +D + + M  L++  DK +   P +      IF S I+SY
Sbjct: 289 YIEVKTPILLNKELWEKSGHWDKFRENMF-LSEAEDKTLAIKPMNCPCHIQIFNSKIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G+MR R F   DA+ F  T         K     + I
Sbjct: 348 RDLPIRMAEFGTCHRYEASGALHGLMRVRGFTQDDAHIF-CTESQITSEALKFCNLLIEI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+    +     +      P +   +   + 
Sbjct: 407 YKDFGFTDILVKFSDRPKNRAGSDEIWDKAEAALKKSVEVANLSYVLNPGDGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 FTL---------------------------KDAIGREWQCGT---LQMDFVLPERLGAYY 496

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DGK H+  M     +G       ++   H GK  +W   +AP ++S++ I    +  
Sbjct: 497 IGSDGKKHHPVMLHRAILGTFERFIGILIEHHSGKFPMW---LAPIQLSILTI---SEDS 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +  +  +    V  D   E+I  +         P+  IVG K V ++ V I++ 
Sbjct: 551 INYANSLKIKAEEHNIRVELDTTNEKINYKIRNHIHKKVPVFWIVGKKEVEENSVSIRYL 610

Query: 422 LTGIREDMSLEEVINYA 438
            +  +  M +++ +   
Sbjct: 611 ESNKQHVMPIDKALKTL 627


>gi|78357681|ref|YP_389130.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123741221|sp|Q30Y11|SYT_DESDG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78220086|gb|ABB39435.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 644

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 153/437 (35%), Gaps = 40/437 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R+E  + G
Sbjct: 230 YLNRIEEAKKRDHRKLGTQLDLFS-FQEEGGSGMVYWHPKGALVRAILEDFERKEHLKRG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW +SG YD+Y + M    D +++     P +      I++S   SY
Sbjct: 289 YQIVQTPQILRRELWEKSGHYDNYRENMY-FTDIDEQPYGVKPMNCVAHMLIYKSRSHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP   +++ +  R E      G++R R+F   DA+    TP+  +     +      +
Sbjct: 348 RDLPVRLFELGVVHRHEKSGVLHGLLRVRQFTQDDAHII-CTPDQLESEIVGVLNFVRDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +   M   + P     S E    A +   +    +         +         
Sbjct: 407 MGVFGFEY-SMEVSTRPEKSIGSDEDWDRATSALVKALEGQGLPYEINEGDG-------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + KL D L    + +    +    F    ++       + G
Sbjct: 458 ------------AFYGPKIDVKLRDCLGREWQCATVQCD----FTLPDRF----DLVYIG 497

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   M     +G++     V+     G    W   +AP +  L+ +        +
Sbjct: 498 QDGERHRPVMVHRVILGSVERFIGVLTEHFAGAFPTW---LAPVQARLLTVT---DAQNE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E+  A L   G  V  D   E++G +   A L   P  +++G K V    V ++ R  
Sbjct: 552 FAEEARAALMAQGIRVEVDTRNEKLGYKVREAQLEKIPYILVIGDKEVEARGVNVRLRKG 611

Query: 424 GIREDMSLEEVINYASH 440
                 +L+EV++    
Sbjct: 612 DNLGLKTLDEVVDIIRA 628


>gi|282882529|ref|ZP_06291150.1| threonine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297671|gb|EFA90146.1| threonine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 636

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 162/448 (36%), Gaps = 54/448 (12%)

Query: 13  ENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   +AE   H+ + R      +H+   G   + P G    +N+ +  +      G  E+
Sbjct: 232 EKREEAEKRDHRKLGRELDLFSMHEEGPGFPFFHPNGMITRNNLLSWWKNVLQERGYGEI 291

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + + DLW  SG +D Y + M    + +++     P +    T I+ +   SYR+LP
Sbjct: 292 LTPVILNEDLWHRSGHWDHYKENMY-FTEIDEEGYAVKPMNCPGSTLIYSTTPHSYRDLP 350

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             + +  L  R EL     G+ R R F   DA+ + L P   K    ++      ++   
Sbjct: 351 LRYAEFGLVHRHELSGALHGLFRVRSFTQDDAHIYCL-PNQIKSEVFEIIDLANLLYDTF 409

Query: 189 GLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           G K   +   + P   +G   S      A+    +    K                    
Sbjct: 410 GFKY-SVELSTRPDDYMGDLGSW---NEAEKALKEALEEKGMP----------------- 448

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATF 302
            +I E   A Y    D H E              R  + G I   F     +      T+
Sbjct: 449 YTINEGDGAFYGPKIDYHLEDAIG----------RTWQCGTIQLDFQLPQNF----ELTY 494

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG K   V +     G++     ++     GK  +W   ++P ++ +I +    +  
Sbjct: 495 VAEDGSKKRPVMLHRALFGSVERFMGILIEHFAGKFPLW---LSPVQVEIIPV---SEKF 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +    +++ +L K G  V  D+  E++G +   A L      +++G K     K+ ++ R
Sbjct: 549 KPYAGEVFDQLKKAGIRVKIDERAEKVGYKIREAQLKKVNYMLVIGEKETESHKLSVRKR 608

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                +D+ + + I        +   +L
Sbjct: 609 SGEEVKDVEVSKFIEDLKKEIESKEIIL 636


>gi|302381720|ref|YP_003817543.1| threonyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192348|gb|ADK99919.1| threonyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 639

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 150/442 (33%), Gaps = 47/442 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      ++ L    + +  +G+  W P G      + A +R   +  G
Sbjct: 232 YLLRIEEAEKRDHRKLGRQMELF--HMQEEGRGMVFWHPKGWILWQVIEAYMRRRLDAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +     W  SG ++ Y   M        + +   P +      IF    +SY
Sbjct: 290 YVEVKTPQVLDRKFWEASGHWEKYRPNMFVCETVEGETLSLKPMNCPGHVQIFGIGQRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    +       +       +
Sbjct: 350 RELPLRMAEFGACHRYEPSGALHGLMRVRGFTQDDAHIF-CREDQIVEETRRFIELTRIV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSKDFMDFPIPSENTDFDDI 242
              LG+++  +   + P     S EF   A+   GE         +D  I   +  F   
Sbjct: 409 HADLGMQTAYINLATRPDVRAGSDEFWDKAEGMLGEAARLAG---VDPVIAEGDGAFYAP 465

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
                +                          K    R    G        Y LP  ++A
Sbjct: 466 KLDFVV--------------------------KDAIGREWTCGT---LQLDYVLPERLNA 496

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG+ H  V +    +G+      ++  ++ G   +W   +AP +  +  I +   
Sbjct: 497 EYVGEDGQKHRPVMLHRAILGSFERFIGIMIENYAGAFPLW---LAPVQAVVATITSD-- 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E++ A+    G  V  D   E++G +     +   P+  +VG       +V I+
Sbjct: 552 -ADGYAEEVAAKFKAAGLRVETDLRNEKVGYKVREHSVGKVPVIAVVGRNEAEQGQVAIR 610

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              +  +  +S+EE I   +  
Sbjct: 611 RLGSQAQTVVSVEEAIRILTEE 632


>gi|307309192|ref|ZP_07588863.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|306900338|gb|EFN30954.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 660

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 152/448 (33%), Gaps = 43/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      ++ L      +   G+  W   G +   ++ A +R    
Sbjct: 231 LDQYLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLE 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDI 117
                E++ P +    LW  SG +  Y   M ++        +D+     P +      I
Sbjct: 289 G-DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQI 347

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K
Sbjct: 348 FKHGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLK 406

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L ++   G K I ++  + P     S E    A+   T+V  +            
Sbjct: 407 INDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQT------------ 454

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +  S   I         A      E         K    R  + G        ++L
Sbjct: 455 ---IEEQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNL 502

Query: 297 P--MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P    A +      K   V +     G+M     ++  ++ G   +W   ++P ++ +  
Sbjct: 503 PERFGAFYIDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW---ISPLQVVVAT 559

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      D   ++  RL   G  V  D   E+I  +     +   P+ V+ G +   +
Sbjct: 560 ITS---EADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCGRREAEE 616

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V I+   +  +  MSL+E +   S  
Sbjct: 617 RSVNIRRLGSQAQTAMSLDEAVASLSAE 644


>gi|146310396|ref|YP_001175470.1| prolyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166980121|sp|A4W6T9|SYP_ENT38 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145317272|gb|ABP59419.1| prolyl-tRNA synthetase [Enterobacter sp. 638]
          Length = 572

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR++ YG E+LR  DR +++ + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWEQYGPELLRFVDRGERSFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKD+YSF  + E  + +Y+KM+ +
Sbjct: 121 ELNSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDSYSFHTSQESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDTSDYAA 231



 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  +
Sbjct: 366 DGQHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A+ +G DG++  + MG YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H 
Sbjct: 426 NASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNHDERGIVWPDNLAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  V++G + +    +E
Sbjct: 486 SYRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDSDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G ++ +   ++++Y      
Sbjct: 546 YKYRRSGEKQMIKTGDILDYLVKAIK 571


>gi|118591255|ref|ZP_01548654.1| threonyl-tRNA synthetase [Stappia aggregata IAM 12614]
 gi|118436331|gb|EAV42973.1| threonyl-tRNA synthetase [Stappia aggregata IAM 12614]
          Length = 656

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 151/452 (33%), Gaps = 48/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L +L+E    AE   H+ + R        +   G+  W P G     ++ A  R
Sbjct: 234 KELKAYLHMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHPKGWDMFQSLIAYKR 289

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEV 113
                T   E++ P +    LW  SG +  Y + M  +        +++     P +   
Sbjct: 290 RVLKDT-YKEVNAPQVLHTSLWETSGHWTWYKENMFSVQCADPEAEDERVFALKPMNCPG 348

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E    
Sbjct: 349 HVQIFKHGLKSYRDLPMRLAEFGMVHRYEPSGALHGLMRVRGFTQDDAHVF-CTEEQMAD 407

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K+    L ++   G   I ++  + P     +      A+        S        
Sbjct: 408 ECLKINDLILSVYEDFGFDEIVVKLSTRPEKRVGTDAAWDHAE-----AIMSDVLKQIEA 462

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            S      DI+            Y                       R  + G       
Sbjct: 463 QSGGRVKTDILPGEGAFYGPKFEYTLRDA----------------IGREWQCGTT---QV 503

Query: 293 KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            ++LP    A +   DG+    V +     G+M     ++  +  G   +W    AP +I
Sbjct: 504 DFNLPERFGAFYVDKDGEKKTPVMIHRAICGSMERFLGILIENFAGHFPLW---FAPLQI 560

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  I +      D  +++   L   G  V  D   E+I  +     L   P+ ++ G +
Sbjct: 561 VVATITS---EADDYGQEVADLLKAKGLKVETDFRNEKINYKVREHSLAKVPVIIVCGMR 617

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              +  V ++   +  +  M L+E I      
Sbjct: 618 EAEERTVNVRRLGSKDQTPMGLDEAIAAFVEE 649


>gi|307321522|ref|ZP_07600917.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306892829|gb|EFN23620.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
          Length = 660

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 152/448 (33%), Gaps = 43/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      ++ L      +   G+  W   G +   ++ A +R    
Sbjct: 231 LDQYLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLE 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDI 117
                E++ P +    LW  SG +  Y   M ++        +D+     P +      I
Sbjct: 289 G-DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQI 347

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K
Sbjct: 348 FKHGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLK 406

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L ++   G K I ++  + P     S E    A+   T+V  +            
Sbjct: 407 INDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQT------------ 454

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +  S   I         A      E         K    R  + G        ++L
Sbjct: 455 ---IEEQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNL 502

Query: 297 P--MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P    A +      K   V +     G+M     ++  ++ G   +W   ++P ++ +  
Sbjct: 503 PERFGAFYIDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW---ISPLQVVVAT 559

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      D   ++  RL   G  V  D   E+I  +     +   P+ V+ G +   +
Sbjct: 560 ITS---EADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCGRREAEE 616

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V I+   +  +  MSL+E +   S  
Sbjct: 617 RSVNIRRLGSQAQTAMSLDEAVASLSAE 644


>gi|319405749|emb|CBI79372.1| Threonyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 654

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 159/449 (35%), Gaps = 47/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        + S G+  W P G K   N+ + +R   
Sbjct: 233 KAYLHMLEE----AEKRDHRRLGREMDLFHFQEESPGMIFWHPKGWKMFQNLISYMRRRL 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTD 116
           +     E+  P +    LW  SG ++ Y + M +         N+      P +      
Sbjct: 289 DNHKYAEVQAPQVLDKSLWEISGHWEWYKENMFKTIPAADDWNNEHIYALKPMNCPGHVQ 348

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  L  R E      G+MR R F   DA+ F  T E       
Sbjct: 349 IFKHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIF-CTEEQLADECL 407

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L  +   G K I ++  + P     S E    A++           M F + + 
Sbjct: 408 SINDLILSTYADFGFKEISIKLSTRPEKRVGSDELWDHAES----------IMTFVLKTI 457

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F   + ++ +  +             + +            R  + G        ++
Sbjct: 458 EKKFSGRVKISILPGEGAFYGPKFEYTLTDAIG-----------REWQCGTT---QVDFN 503

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   D  K   V +     G+M     ++  +  G    W   +AP +I + 
Sbjct: 504 LPERFGAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFSGHIPFW---LAPQQIVVA 560

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      +  +KI  +L  +G     D   E+I  +     L   P+ ++ G +   
Sbjct: 561 TITSDS---NEYAKKITEKLKAIGLLATLDSRNEKINYKIREHFLQKIPVILVCGKREAE 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + V ++   +  +  + +E+V       
Sbjct: 618 TNSVNMRRLGSVKQTFLPIEKVFQQLLDE 646


>gi|307564422|ref|ZP_07626963.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307346782|gb|EFN92078.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 650

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 156/448 (34%), Gaps = 40/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y L + +   RD      ++ L      +  KG+  WLP G +    +  ++R+   
Sbjct: 230 LDEYLLMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDMLRKLLK 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
                E+  P + S +L++ SG Y  YGK+  +       D+  +  P +     +++  
Sbjct: 289 PYNYQEVITPGIGSKNLYITSGHYAHYGKDAFQPIQTPEEDEEYMLKPMNCPHHCEVYAY 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +     
Sbjct: 349 KPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRNFTQDDAHIF-VRPDQVKAEFENNID 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L++F   G ++   +                  D  +   +      D          
Sbjct: 408 IILKVFKTFGFENYEAQISLR--------------DPEDKDKYIGD---DEVWNESEQAI 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                   +        AA      +         K    R  ++G I      Y+LP  
Sbjct: 451 KQACKEKGLKATVELGEAAFYGPKLDF------MVKDAIGRRWQLGTI---QVDYNLPQR 501

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   D  K   V +     G++    AV+     G   +W   + P +++++ +  
Sbjct: 502 FHLEYTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAILPV-- 556

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D   K+  +L         DD  E++G +    +L   P  V+VG K  ++  V
Sbjct: 557 -SEKYNDYARKVKQQLDASDVRALIDDRNEKVGRKIRDNELKRIPYMVVVGEKEAAEGLV 615

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ +  G +  M ++  I       + 
Sbjct: 616 AMRKQGGGEQSTMPVKAFIERVKAEVAE 643


>gi|251798759|ref|YP_003013490.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247546385|gb|ACT03404.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 645

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 168/441 (38%), Gaps = 35/441 (7%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L + T    +  +G+  WLP G K    +   I + + R G 
Sbjct: 235 LHFLEEAKKRDHRKLGKELKMFT-FSREVGQGLPLWLPNGAKVRRTLERYIVDLEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M  +   +++ ++  P +      +++S ++SYR
Sbjct: 294 EHVYTPVLANVELYKISGHWEHYSEDMFPVMALDNEELVLRPMNCPHHMMVYKSDMRSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++     +++
Sbjct: 354 DLPVRIAEMGTMHRYEMSGALTGLHRVRAMTLNDAHIF-CRPDQIKEEFARVVNLIRKVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+K    R                  D  +T+ +   D M         +  + +  
Sbjct: 413 EDFGIKEYRFRLSYR--------------DPQDTEKYFQNDEMWEMSQRMLREVVEELG- 457

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L + + +S   ++    F    ++       + G 
Sbjct: 458 -LPFFEAEGEAAFYGPKLDVQIKTALGKEETLSTAQLD----FLLPDRF----ELEYIGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   GI + M  + A +  +  G   +W   ++P +  +I +          
Sbjct: 509 DGKKHRPVVIHRGIISTMERMTAFLLENFAGALPLW---LSPVQAKVIPV---STAYEAY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L   G  V  D   E++G +   A L   P  ++VG        V ++ R  G
Sbjct: 563 AREVEEKLQLAGIRVESDLRNEKLGYKIREAQLEKLPYMLVVGENEAQSGSVSVRKRGEG 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 + E++    +  +  
Sbjct: 623 DIGAKPVAELVELLQNEIATK 643


>gi|85859447|ref|YP_461649.1| prolyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85722538|gb|ABC77481.1| prolyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 597

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 133/231 (57%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP  +E P DAE+ SH+LMLR GMI + S GIYS+LPLG + L  V  IIREE
Sbjct: 20  MRYSEMFLPTEREIPSDAEVVSHQLMLRAGMIRKLSAGIYSYLPLGYRVLRKVEQIIREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 80  MNRAGAQEVYLPMVQPAELWQESGRWEHYGKELLRFRDRHDREYCLGPTHEEVITDLVRH 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IK+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD   EG++ SY KMF +
Sbjct: 140 EIKTYRQLPKNLYQIQTKFRDEIRPRFGVMRGREFGMKDAYSFDADEEGAEISYQKMFEA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+  P+ A+SG IGG  SHEF+V+AD+GE  +          
Sbjct: 200 YKRIFARCGLRFRPVEADSGTIGGSFSHEFMVMADSGEDGLVFCATCSYAA 250



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 102/181 (56%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +     ARGIEVGH+F  GTKYS  M A++   +GK+  + MG YGIG  R 
Sbjct: 409 ETDSCPRCQGALKFARGIEVGHVFKLGTKYSKAMGASYLDKNGKEQIMIMGCYGIGTGRT 468

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA IE +HD  GI+WP  ++P+++ +  +  +D+   +  E++Y  L+  G +V  DD 
Sbjct: 469 VAACIEQNHDENGIVWPMPISPYQVIITPVNMNDKALAETAERLYESLAGKGAEVLLDDR 528

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F  ADL+G P++V VG K +++ KVE++ R TG   D+ ++ V          
Sbjct: 529 DERAGVKFKDADLIGIPIRVTVGPKKLAEGKVEVRLRDTGETSDVQVDSVEKMILRVIEG 588

Query: 445 N 445
            
Sbjct: 589 K 589


>gi|293394735|ref|ZP_06639027.1| proline-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291422861|gb|EFE96098.1| proline-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 572

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKD+YSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDSYSFHTTQESLQATYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMGLDFRPVQADTGSIGGSASHEFQVLAASGEDDIVFS 224



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  Q   P    +D+ N    D+ P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWQRDLPLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H 
Sbjct: 426 KATVQGEDGRNQLLNMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFHVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SFRVQELAEKLYAELRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKNRRVGEKQMIKTGDIVEYLLAQIQ 571


>gi|51245280|ref|YP_065164.1| threonyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|50876317|emb|CAG36157.1| probable threonyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 657

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 154/439 (35%), Gaps = 38/439 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K+   I +   RD      +L L T M      G+  WLP G +    +    + E  R 
Sbjct: 248 KHLNNIEEAKKRDHRKLGKELELFT-MQDSIGPGLPLWLPKGARMRHQIEEFWKAEHYRH 306

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
               +  P +   DLW  SG  D Y   M    D +       P +      ++++  +S
Sbjct: 307 DYELLYTPHIARQDLWKTSGHLDFYADSMYAGMDIDGVTYQIKPMNCPFHVGVYKAKKRS 366

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+ P  + ++   +R E      G+MR R F   DA+ F   PE  +     +    L 
Sbjct: 367 YRDFPLRWCELGTVYRYERAGALHGLMRVRSFTQDDAHIF-CRPEQLEDEIFNILDFNLF 425

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P     + E    +          K       P E   +   I
Sbjct: 426 ILKSFGFSEYDIYLSTRPEKSVGTDENWDKSTNALKLALEKKGLKYEIDPGEGVFYGPKI 485

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                               + K+ D L  + + S   ++    F    ++      ++ 
Sbjct: 486 --------------------DIKIKDQLGRSWQCSTVQVD----FNLPERF----ELSYV 517

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+D  +H  + +    +G++     V+   H G   +W    +P +  ++NI        
Sbjct: 518 GSDNSEHQPIMIHRALMGSLERFIGVLIEHHAGAFPLW---FSPVQARILNITDD---QI 571

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+YA L      V  D   E++  +   A L+  P  +I+G K   D  V ++ R 
Sbjct: 572 EYGEKVYAELRAADIRVEKDLRNEKLNYKIREAQLVKTPYMLIIGDKEKEDGTVTVRMRN 631

Query: 423 TGIREDMSLEEVINYASHR 441
               + M+++E +      
Sbjct: 632 GKNLDPMTVQEFVALVLEE 650


>gi|295399847|ref|ZP_06809828.1| prolyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978250|gb|EFG53847.1| prolyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 567

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAVELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S 
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYSD 225



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 15/249 (6%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG   S    V+AD     +          +   N +    I +N   +   + YA
Sbjct: 332 SLGPIGVSES--VTVVADHAVKAIVNG-------VCGANEEGYHYIGVNPERDFTVSEYA 382

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   +  D  P+ K      RGIEVGH+F  GT+YS  ++AT+   +G+   + MG
Sbjct: 383 ---DLRFIQEGDPSPDGKGTIRFARGIEVGHVFKLGTRYSEALNATYLDENGRSQTMIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+VAA+ E   D  G++WP +VAPF + LI   A  +  R   ++ Y +L + 
Sbjct: 440 CYGIGVSRLVAAIAEQFADENGLVWPVAVAPFHVHLITANAKSEEQRQLADEWYEKLRQA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G +FA +DL+G P++V VG +   +  VE+K R TG   ++ + E+I
Sbjct: 500 GLEVLYDDRPERAGVKFADSDLIGIPVRVTVGKR-AGEGVVEVKVRQTGESVEVPVHELI 558

Query: 436 NYASHRFSN 444
           +        
Sbjct: 559 DTIQRLLQQ 567


>gi|256828741|ref|YP_003157469.1| prolyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256577917|gb|ACU89053.1| prolyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 580

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+++P L+E P +AE+ SHKL+LR GMI + + GIY+++PLG +A++ V  I+REE
Sbjct: 1   MLFSKFYVPTLKETPAEAEVISHKLLLRAGMIRKLTSGIYTYMPLGLRAINKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+S+P +Q ADLW ESGR+D YGKE+LRL DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEISMPMVQPADLWQESGRWDFYGKELLRLKDRHGRDYCLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   EG   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDDEGVNASYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F RLGL+   + A+SG IGG  SHEF+VLADTGE  +          
Sbjct: 181 YTRVFTRLGLEFRAVSADSGAIGGSFSHEFMVLADTGEDTLAVCTSCSYAA 231



 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 2/204 (0%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFY 289
             + +     +     I     A     +D+ +  L D  P         +GIEVGH+F 
Sbjct: 358 ANAADAHLIHVDPRRDITLSTDAAPTGYADLRSITLDDPCPACGGSLTMPKGIEVGHVFK 417

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  M+ATF   +GK+  + MG YGIG  RVVAA IE ++D  G+I+P S+APF+I
Sbjct: 418 LGTKYSKSMNATFLDENGKEQVIIMGCYGIGVSRVVAACIEQNNDANGMIFPPSIAPFEI 477

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +++ +   D+       +I+  L   G D  +DD  E+ G +F  ADLLG P+Q+++G K
Sbjct: 478 TILAMSTKDEKVMAKGREIHDWLESQGIDTLFDDRDERPGVKFNEADLLGSPMQIVIGGK 537

Query: 410 FVSDSKVEIKHRLTGIREDMSLEE 433
            +    +E+K+R TG + ++ + +
Sbjct: 538 GLEKGVLEVKNRKTGEKRELPVAD 561


>gi|48783|emb|CAA39134.1| ProRS [Escherichia coli]
 gi|147362|gb|AAA24420.1| prolyl-tRNA synthetase [Escherichia coli]
          Length = 572

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+L++R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLIVRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGQASHEFQVLAQSGEDDVVFSDTSDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  + + +  RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 546 YKYRRNGEKQLIKTGDIVEYLVKQIK 571


>gi|316933337|ref|YP_004108319.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601051|gb|ADU43586.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 693

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 144/446 (32%), Gaps = 44/446 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++   +R       
Sbjct: 263 YLHQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWSLFQSLVGYMRRRLAG-D 319

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M           + +     P +      IF+ 
Sbjct: 320 YDEVNAPQILDKVLWETSGHWEWYRENMFAAQSAGEDAEDKRWFALKPMNCPGHVQIFKH 379

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T         K+  
Sbjct: 380 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEAQLAEECIKIND 438

Query: 180 SYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  +   G +  + ++  + P     + E    A+        +    +      N  
Sbjct: 439 LILSTYSDFGFEGELTVKLSTRPDKRVGTDEMWDHAER-----VMATVLSEIKAKGGNRI 493

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
             +I             Y                       R  + G        ++LP 
Sbjct: 494 KTEINPGEGAFYGPKFEYVLRDA----------------IGRDWQCGTT---QVDFNLPE 534

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A +  ADG K   V +     G+M     ++   + G   +W   +AP ++ +  I 
Sbjct: 535 RFGAFYIDADGAKKAPVMVHRAICGSMERFTGILIEHYAGNFPLW---LAPVQVVVTTIT 591

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      +  +K+ A L K G     D   E+I  +     L   P  ++VG K      
Sbjct: 592 SEGD---EYAKKVLAALRKAGLRADIDLRNEKINFKVREHSLAKVPALLVVGKKEAETHS 648

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++   +  ++ M  +E I      
Sbjct: 649 VSVRRLGSDGQKVMPTDEAIAALVDE 674


>gi|92114261|ref|YP_574189.1| prolyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
 gi|114152183|sp|Q1QVL8|SYP_CHRSD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91797351|gb|ABE59490.1| prolyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 573

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DA+I SH+LMLR GMI + S G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASQLLISTLKETPADADIVSHQLMLRAGMIRRLSSGLYTWLPLGLRTLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P++Q A+LW ESGR+D YG  +LR+ DR+++   YGPTHEEV+TD+ R+
Sbjct: 61  MNRAGAQEVLMPSIQPAELWQESGRWDQYGNLLLRIRDRHERDFCYGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSFD+   G + SY+ M+ +
Sbjct: 121 EIRSYKQLPSNFYQIQTKFRDETRPRFGVMRAREFIMKDAYSFDIDQAGLQRSYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF VLAD+GE  V  S
Sbjct: 181 YMRIFTRLGLDFRAVEADNGDIGGSGSHEFQVLADSGEDAVIFS 224



 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K     ARGIEVGH+F  GTKYS  M
Sbjct: 367 DGQHYFGINWERDVALPKVADLRNVVEGDPSPDGKGTLSIARGIEVGHVFQLGTKYSTAM 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +G+   + MG YGIG  RVVAA IE +HD  GIIWPD++APF+I+L+ + AH 
Sbjct: 427 NATVLDDNGQAVPLLMGCYGIGVTRVVAAAIEQNHDAGGIIWPDAIAPFEIALVPMNAHK 486

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  R+  + +Y +LS  G DV  DD   + G +FA  +L+G P +V++G + + + ++E
Sbjct: 487 SERVREYADTLYQQLSDAGFDVLIDDRDLRPGVKFADQELIGIPHRVVIGDRGLDNDELE 546

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R       +  E ++++   R + 
Sbjct: 547 YKGRRDSDVTMVPTEGLLSFLRERITK 573


>gi|15965178|ref|NP_385531.1| threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|22654127|sp|Q92QB0|SYT_RHIME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15074358|emb|CAC46004.1| Probable threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
          Length = 661

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 152/448 (33%), Gaps = 43/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      ++ L      +   G+  W   G +   ++ A +R    
Sbjct: 232 LDQYLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLE 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDI 117
                E++ P +    LW  SG +  Y   M ++        +D+     P +      I
Sbjct: 290 G-DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQI 348

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K
Sbjct: 349 FKHGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLK 407

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L ++   G K I ++  + P     S E    A+   T+V  +            
Sbjct: 408 INDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQT------------ 455

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +  S   I         A      E         K    R  + G        ++L
Sbjct: 456 ---IEEQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNL 503

Query: 297 P--MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P    A +      K   V +     G+M     ++  ++ G   +W   ++P ++ +  
Sbjct: 504 PERFGAFYIDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW---ISPLQVVVAT 560

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      D   ++  RL   G  V  D   E+I  +     +   P+ V+ G +   +
Sbjct: 561 ITS---EADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCGRREAEE 617

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V I+   +  +  MSL+E +   S  
Sbjct: 618 RSVNIRRLGSQAQTAMSLDEAVASLSAE 645


>gi|42523121|ref|NP_968501.1| hypothetical protein Bd1617 [Bdellovibrio bacteriovorus HD100]
 gi|73919772|sp|Q6MML0|SYT_BDEBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39575326|emb|CAE79494.1| thrS [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 155/447 (34%), Gaps = 44/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   I +   RD      +L +     ++ + G   +   G    +++   +RE   
Sbjct: 237 LETYLHNIEEAKKRDHRKLGKELGMF--YFNELAPGSPFFTGKGATVYNSLQTYLRELYF 294

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            TG  E+  P +   +L+  SG Y +Y + M      +++     P +      ++ S  
Sbjct: 295 ETGYQEVITPQIFDVNLFHTSGHYQNYKENMF-FTKVDERDFASKPMNCPSHCLLYNSEK 353

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP          R E      G+ R R F   DA+ F    +  +    K     
Sbjct: 354 YSYRDLPIKMADFGRLHRYEKSGAMHGLTRVRTFCQDDAHIF-CRMDQLQEEIAKFMNLL 412

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R++ +LG+ +  +   + P     S E+  +A+    +   S +      P +   +  
Sbjct: 413 NRVYDKLGMGNYKIFLSTRPDNRMGSEEYWDMAEGALAEALKSLNLPFELNPGDGAFYGP 472

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            + +  +                               R  ++G         +LP    
Sbjct: 473 KLDIMFVDA---------------------------LNRPWQLGT---LQVDPNLPQAFD 502

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G D K+H  V +    +G++     V      G     P  + P +++++N+    
Sbjct: 503 LKYTGEDNKEHRPVMLHRAILGSLERFIGVYLEHTAGH---LPPWMMPVQVAILNVTDR- 558

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 CE++   L      V +D   E++  +   A L   P  +IVG K      V +
Sbjct: 559 --VNSFCEELQNSLKGHSVRVEFDRRNEKLNYKIREAQLQKIPYMIIVGDKEAESRTVSL 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R     + +++++V+N  +      
Sbjct: 617 RLRDGSEHKGLTVDQVMNLITTDIKTR 643


>gi|298694953|gb|ADI98175.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323440773|gb|EGA98482.1| threonyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442928|gb|EGB00551.1| threonyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 645

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KELKAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFR 119
           +   G   +  P L + DL+  SG +D Y ++M      ++ ++M+  P +      I+ 
Sbjct: 285 EVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++ 
Sbjct: 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVV 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++   G +    R                  D  + + +   D M     +   +
Sbjct: 404 NMIIDVYKDFGFEDYSFRLSYR--------------DPEDKEKYFDDDDMWNKAENMLKE 449

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D +      E+     A      + ++  ++ + + +S   ++    F    ++    
Sbjct: 450 AADELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF---- 499

Query: 299 SATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +   
Sbjct: 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVQIIPVNV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   ++   L   G  V  D+  E++G +   A +   P Q++VG K V +++V 
Sbjct: 556 -DLHYDYARQLQDELKSQGVRVSIDERNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   +  +E +  +E I          +
Sbjct: 615 VRQYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|39936469|ref|NP_948745.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|73919820|sp|Q6N4D3|SYT_RHOPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39650325|emb|CAE28847.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 658

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 144/446 (32%), Gaps = 44/446 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++   +R       
Sbjct: 234 YLHQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWSLFQSLVGYMRRRLAG-D 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M           + +     P +      IF+ 
Sbjct: 291 YDEVNAPQILDKVLWETSGHWEWYRENMFAAQSAGDDAEDKRWFALKPMNCPGHVQIFKH 350

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T         K+  
Sbjct: 351 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEAQLAEECIKIND 409

Query: 180 SYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  +   G +  + ++  + P     + E    A+        +    +      N  
Sbjct: 410 LILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAER-----VMATVLSEIKAKGGNRI 464

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
             +I             Y                       R  + G        ++LP 
Sbjct: 465 KTEINPGEGAFYGPKFEYVLRDA----------------IGRDWQCGTT---QVDFNLPE 505

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A +  ADG K   V +     G+M     ++   + G   +W   +AP ++ +  I 
Sbjct: 506 RFGAFYIDADGAKKAPVMVHRAICGSMERFTGILIEHYAGNFPLW---LAPVQVVVTTIT 562

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      D  +K+ A L K G     D   E+I  +     L   P  ++VG K      
Sbjct: 563 SEGD---DYAKKVLAALRKAGLRADIDLRNEKINFKVREHSLAKVPALLVVGKKEAESHS 619

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++   +  ++ M  +E I      
Sbjct: 620 VSVRRLGSDGQKVMPTDEAIAALVDE 645


>gi|239637520|ref|ZP_04678492.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596738|gb|EEQ79263.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 645

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L          G+  WLP G      +   I +++  
Sbjct: 229 KAHLEMLEERKERDHRKIGKDLELFAN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++ + M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMKLDETEEMVLRPMNCPHHMMIYNNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +    R                  D  + + +   D M     +   +  D
Sbjct: 407 QDVYKDFGFEDYRFRLSYR--------------DPEDKEKYFDDDEMWNKAENMIKEAAD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 ELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVEIIPVNL--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + I   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++ 
Sbjct: 558 HYDYAKSIQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSQDQETLEKDEFIWNLVDEIRLKK 643


>gi|251788479|ref|YP_003003200.1| prolyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247537100|gb|ACT05721.1| prolyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 572

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ MF +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVFS 224



 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  +
Sbjct: 366 DGKHYFGINWERDVALPQVADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RV+AA IE +HD +GIIWPD++ PF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQTLTMGCYGIGVTRVIAAAIEQNHDDRGIIWPDAITPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SFRVQEVAEGIYQQLRANGIDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            KHR  G +E +   +++ +   +
Sbjct: 546 YKHRRKGEKEMIKAGDIVEFLLSQ 569


>gi|302342678|ref|YP_003807207.1| prolyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301639291|gb|ADK84613.1| prolyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 571

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 163/227 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y +P L+ENP DAE+ SH+LMLR G+I + + GIY+WLP+G + L  V AI+R+E
Sbjct: 1   MNFSRYLIPTLKENPSDAEVVSHQLMLRAGLIRKLAGGIYTWLPMGLRVLRKVEAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q A+LW ESGR+D YG+E+LR  DR+D      PTHEEV+TD+ R 
Sbjct: 61  MNAAGAQELLMPGVQPAELWRESGRWDFYGRELLRFVDRHDNEYCLAPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR++P   YQIQ KFRDE+RPRFGVMR+REFLMKDAYSFD + + +  SY  M  +
Sbjct: 121 EIQSYRDMPLNLYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFDASEDAAAQSYQIMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y+RIF RLGL+   + A+SG IGG  SHEF+VLADTGE  +      
Sbjct: 181 YMRIFDRLGLRYGVVEADSGSIGGSFSHEFMVLADTGEDAIVSCPAC 227



 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 3/188 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P         RGIEVGHIF  GTKYS  + AT+   DG+   + M
Sbjct: 377 ATIADLRNLAAGDPCPSCGAPPTLARGIEVGHIFRLGTKYSKALGATYLDVDGQAKTIVM 436

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R+VAA IE  +D  GI++P ++AP  ++++ ++A      +A ++++  L  
Sbjct: 437 GCYGIGVSRIVAAAIEQGNDEAGIVFPLAIAPVSVAVLPMRAEGP-AMEAAQRLHDELWA 495

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G D   DD   + G +F  +DLLG PL+V+VG K +   +VE+K R     E + + + 
Sbjct: 496 LGVDCLLDDRDIRPGVKFKDSDLLGVPLRVVVGPKGLETGEVELKKRTAPQPEMIPMAQA 555

Query: 435 INYASHRF 442
               +   
Sbjct: 556 ATIIAKLV 563


>gi|222100818|ref|YP_002535386.1| Threonyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|254783544|sp|B9KAN7|SYT_THENN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221573208|gb|ACM24020.1| Threonyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 640

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 160/443 (36%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L   +   ++ G+  +LP G   L+ +    RE     G
Sbjct: 229 YLKFLEEAQKRDHRKLGPQLELFM-LNTDYAPGMPFFLPRGVIVLNELMNFSRELHRERG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M    ++ ++     P +      +++S   SY
Sbjct: 288 YQEIFTPLIMNEQLWRISGHWDHYAENMY-FIEKGEERYAVKPMNCPGHILVYKSRAVSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++     R E      G+MR R F   DA+ F  TP+  +     +      I
Sbjct: 347 RDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIF-CTPDQIEDEILGVLELINTI 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G     +   + P            A     +              E         
Sbjct: 406 YSQFGFTYR-VELSTMPEDHMGDEAIWEKATNALKKALDRAGLPYRVNEGEG-------- 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  + DSL    + +   ++               + T+ G
Sbjct: 457 ------------AFYGPKIDFHIKDSLGREWQCATIQLDFMMPEK--------FNVTYIG 496

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D ++H  V +     G++     ++     G    W   +AP ++++I I        +
Sbjct: 497 PDNREHTAVMIHRAIYGSLERFFGILIEHFAGAFPTW---IAPVQVAVIPI---SDKHSE 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   LS+ G  VF DD  E +G +   A +   P  V++G + +   K+ ++ R  
Sbjct: 551 GAKKVATMLSREGFRVFLDDRRETLGYRIRQAQIQKIPYMVVLGDRELESGKLSVRTRSG 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              +D+ ++  I+       + +
Sbjct: 611 KEIKDVEMDHFIDTLKKEVRDRK 633


>gi|213405351|ref|XP_002173447.1| prolyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212001494|gb|EEB07154.1| prolyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 418

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 221/447 (49%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASH--KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R S+     L+E+ ++  +  +   L++  G + Q S G++  LPLG + +DN++ I+ +
Sbjct: 8   RASQLL---LKESGKNYVVPKNVSSLLIDQGYVQQSSSGVFQLLPLGLRVMDNISNIVHQ 64

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    GAI +S+ +L +  +W +S R++  G EML + DR  +     PTHEE MT +  
Sbjct: 65  ELAGLGAIRVSLASLSAKAVWQQSKRWEKMGSEMLHIRDRAQRDYCLCPTHEEEMTRMVA 124

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +   S + LP + YQI  K+RDE RPR G++R++EFLM D Y++D T E ++ +Y ++F 
Sbjct: 125 NVFHSSKQLPISVYQIGSKYRDEARPRGGLLRAKEFLMMDLYTYDATKEAAEKTYERVFQ 184

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           S+ RIF  +GL      A+ G +GG  SHEF  L + GE  V      +           
Sbjct: 185 SFHRIFRAIGLPYTVAEAQQGTMGGAYSHEFHYLNEVGEDVVLRCPQCLHA--------- 235

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A T   H           + +  + IEVGH F  G  Y+ P  
Sbjct: 236 -----------------ANTDAYHGSIDKCVHCGGELLQQKCIEVGHTFNLGQTYTRPFQ 278

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                 D     + M SYGIG  R++AAV   +HD KG++WP ++AP+KI ++   A D 
Sbjct: 279 LCLSNGD----ALYMNSYGIGISRLLAAVAHMTHDEKGLVWPTAIAPWKIIILP--ASDS 332

Query: 360 VCRDACEKIYARLSK-VGC-DVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              D  E +Y  L++  G  ++  DD G +  G +   A+L+GFP  + VG  +  D   
Sbjct: 333 KIPD-AEALYDSLAQTFGANNILLDDRGHKSYGRKIRDAELIGFPFIITVGESYTRDGSF 391

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           ++  R +  R  +   ++    S  F+
Sbjct: 392 DVLARASNTRYKLKAAQLHTVVSGNFA 418


>gi|163788630|ref|ZP_02183075.1| N-acetylmuramic acid-6-phosphate etherase [Flavobacteriales
           bacterium ALC-1]
 gi|159875867|gb|EDP69926.1| N-acetylmuramic acid-6-phosphate etherase [Flavobacteriales
           bacterium ALC-1]
          Length = 646

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 163/445 (36%), Gaps = 41/445 (9%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G    + +   ++  Q + G 
Sbjct: 231 LHLLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKAAQKKAGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             +  P +   +L+V SG Y  YG++  +     + D+  +  P +     +I+ +   S
Sbjct: 290 EMVVTPHIGQKELYVTSGHYAKYGEDSFQPIKTPKEDEEFLLKPMNCPHHCEIYNNKPYS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + ++    L 
Sbjct: 350 YKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDAEFKEVIDLVLY 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  LG +    +                       +    ++       +      D  
Sbjct: 409 VFGSLGFEDFTAQVSLRD-------------PESPDKYIGDEEHWKKAEDAILNAAIDKG 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
               +     A Y    D                  R  ++G I      Y+LP     T
Sbjct: 456 LNYVVETGEAAFYGPKLDFMVRDALG----------RQWQLGTI---QVDYTLPERFDLT 502

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +KG+D + H  V +     G+M    A++     G   +W   + P +  +I+I    + 
Sbjct: 503 YKGSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLW---LMPEQAIIISI---SEK 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EK+   L         D+  E +G +   A++  FP  +IVG +   D+ + ++ 
Sbjct: 557 YEKYAEKVLNLLENDEIRALADNRNETVGKKIREAEMQKFPFMIIVGEQEAQDNTITVRQ 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   +++++ +N    R + +
Sbjct: 617 HGGEDLGTITVKDFVNIVKDRINKS 641


>gi|328954064|ref|YP_004371398.1| Prolyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454388|gb|AEB10217.1| Prolyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 573

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK  LP L+E P +AE  SH+L+LR GMI + + GIY +LPLG   L  V AI+REE
Sbjct: 1   MYYSKMLLPTLKETPAEAETVSHQLLLRAGMIRKLTSGIYDYLPLGLMVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q A+LW ESGR+  YGKE+LR  DR+D+   +GPTHEEV+TD+ R 
Sbjct: 61  MNCAGAQELLLPAVQPAELWQESGRWQIYGKELLRFQDRHDRDYCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFG++R REF+MKD YSFD+   G+  +Y  M+ +
Sbjct: 121 EVHSYRQLPLNLYQIQTKFRDEIRPRFGLIRGREFIMKDGYSFDIDEAGADQTYRAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+   + A+SGPIGG  SHEF+VLA+TGE  V          
Sbjct: 181 YTRIFSRCGLRFKTVEADSGPIGGSFSHEFMVLAETGEDVVVSCTACAYAA 231



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 97/177 (54%), Gaps = 2/177 (1%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         RGIEVGH+F  G KYS  + ATF    G++ Y+ MG YGIG  R+VA
Sbjct: 390 DPCPRCGAALEFLRGIEVGHVFKLGYKYSKALKATFLDDQGREQYMFMGCYGIGVSRIVA 449

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE +HD  GII+P  +APF++ L+ I A+D        ++Y  +   G +V +DD  E
Sbjct: 450 AAIEQNHDLDGIIFPMPLAPFQVLLVPIAANDVDTMAVASRLYQEIRAAGIEVLFDDRNE 509

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + G +F   DLLG P++V++G K ++    E++ R +   + + L  ++ Y      
Sbjct: 510 RPGIKFKDGDLLGIPVRVVLGPKTLAQGAAEVRQRRSRAVQLIPLASLVAYLQDHIQ 566


>gi|121997498|ref|YP_001002285.1| prolyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|152112924|sp|A1WUX1|SYP_HALHL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121588903|gb|ABM61483.1| prolyl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 568

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 125/225 (55%), Positives = 165/225 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L   +E P DAEI SH+LMLR GMI + S G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRVTRFPLSTTRETPADAEIVSHQLMLRAGMIRRLSSGLYTWLPLGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+D+   +GPTHEEV+TD+FR 
Sbjct: 61  MNRAGALEVLMPAVQPAELWQESGRWEKYGPELLRIRDRHDREGCFGPTHEEVITDLFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  +YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L  +  +  Y +M  +
Sbjct: 121 EIRSYRQLPVNYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDDDLRAEYQRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL   P+ A++G IGG +SHEF+VLAD+GE  +   +
Sbjct: 181 YCRIFQRTGLAFRPVEADTGAIGGSVSHEFMVLADSGEDAIAVCE 225



 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 106/197 (53%), Gaps = 2/197 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +      P   T+D+      D  P+ +      RGIEVGHIF  GT YS  M A+    
Sbjct: 371 VNWGRDLPEPETADLREVTAGDPSPDGEGTLTLRRGIEVGHIFQLGTTYSEAMGASVLDE 430

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G++  V MG YGIG  RVVAA IE +HD +GI WP  +APF+++L+ IKA D    +A 
Sbjct: 431 QGQERTVTMGCYGIGVSRVVAAAIEQNHDDRGICWPAPIAPFQVALVAIKAEDPAVAEAA 490

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +YA L+  G DV +DD   + G +FA  +L+G P +V+V  + + +  VE K R    
Sbjct: 491 EALYADLTASGIDVLYDDRDARPGVKFADMELIGIPHRVVVSPRAIQEGSVEYKGRQDAD 550

Query: 426 REDMSLEEVINYASHRF 442
              +   E++ +  +R 
Sbjct: 551 PTHVPRAEIVTWLKNRL 567


>gi|66044647|ref|YP_234488.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|81308436|sp|Q4ZWM2|SYP_PSEU2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|63255354|gb|AAY36450.1| Prolyl-tRNA synthetase, bacterial [Pseudomonas syringae pv.
           syringae B728a]
          Length = 571

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 161/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|225630645|ref|YP_002727436.1| threonyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|254783546|sp|C0R403|SYT_WOLWR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225592626|gb|ACN95645.1| threonyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 633

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 95/448 (21%), Positives = 163/448 (36%), Gaps = 44/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 221 RNKDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRK 280

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 281 KLINNGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           SH +SYR+LP    +     R+E      G+MR R F   DA+ F +  E       K  
Sbjct: 341 SHTRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM-EEQVNSETIKFC 399

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG   I ++    P       E    A+    +            P E   
Sbjct: 400 DLLKEVYSELGFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAVKEAGLSYELSPGEGAF 459

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               K    R  + G        + LP 
Sbjct: 460 YGPKLEF---------------------------VLKDAIGRSWQCGT---LQVDFILPE 489

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A + GADG K H V +    +G       ++  ++ GK  +W   +AP +++++ I 
Sbjct: 490 RLGAFYIGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVW---LAPTQLAILTIT 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      KI   L + G  V  D   E+I  +  +  L   P+  IVG   V+   
Sbjct: 547 N---EADGYATKISNVLKEQGVRVKTDLTNEKISYKIRLHSLNKVPILWIVGKNEVTSKT 603

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V +++  +  +E  SLE+ I       +
Sbjct: 604 VSVRNLGSERQESFSLEKAIELLLKSIN 631


>gi|225849423|ref|YP_002729587.1| threonyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644143|gb|ACN99193.1| threonyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 641

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 153/449 (34%), Gaps = 41/449 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  K +L +L+E   RD      +L L   MI +    G+  WLP G      +    +E
Sbjct: 230 KELKDYLNMLEEAKKRDHRKIGKELELF--MIDEEVGGGLAIWLPKGAIIRKEIEDAWKE 287

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G   +  P +    LW  SG    Y + M       ++     P +     +I++
Sbjct: 288 EHLKRGYQLVYTPHVGKEHLWQTSGHLSFYQENMYPRMQIEEEGYYVKPMNCPFHVEIYK 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SY+ LP    ++   +R E      G+MR R F   DA+      +  +     + 
Sbjct: 348 SKQRSYKELPIRLAELGTVYRYERSGALHGLMRVRGFTQDDAHII-CREDQVEDEIRDVL 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L      G     +   + P           +A     +   S              
Sbjct: 407 NFALDTLKSYGFDEFEIYLSTRPEKSVGDDRMWEVATQSLRKAIESTGIDYKIDEGGG-- 464

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + K+ D++    + S    +    F    ++    
Sbjct: 465 ------------------AFYGPKIDVKIKDAIGRMWQCSTIQFD----FNLPQRF---- 498

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G D + H    +     G++     V+   + G   +W   ++P ++ +I I   
Sbjct: 499 DMYYIGEDNQRHRPYMIHRAIFGSIERFIGVLLEHYAGFLPVW---LSPVQVKIIPIADK 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+   L +    V  DD  E++  +   A+L   P  +++G K V ++ V 
Sbjct: 556 ---HLDFANKVKDILLQNKVRVEVDDRSERMNKKIRDAELQKIPFMLVIGDKEVENNSVA 612

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ + +G  E M+++  +   +      +
Sbjct: 613 VREKASGKTESMTVDNFVKKITSLIKEKK 641


>gi|15606769|ref|NP_214149.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|8928367|sp|O67583|SYT_AQUAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2984004|gb|AAC07549.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 638

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 159/444 (35%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L   +E   RD      +L   T +      G+  WLP G      +   +REE  +
Sbjct: 230 KERLKFYEEVKKRDHRRLGKELEFFT-IDDNVGAGLILWLPRGAIYRKVLEDYLREEHLK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  + Y + M      +++     P +      I++S  +
Sbjct: 289 RGYQLVYTPHVGKSKLWETSGHLECYKQNMFPSMKIDEEEYYVKPMNCPFHIAIYKSRTR 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP   +++   +R EL     G++R R F   DA+    TPE       +     L
Sbjct: 349 SYKELPLKLFELGTVYRYELSGVLHGLLRVRGFTQDDAHIV-CTPEQVNDVIRETLDFAL 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                 G     +   + P     S E   ++     +      +               
Sbjct: 408 STLKDFGFNEFKIYLSTRPEYSIGSDEQWEVSQNALKKAIEDLGYEYEIDEGGG------ 461

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    ++S    +    F    ++      T+
Sbjct: 462 --------------AFYGPKIDVKIRDAIGRMWQLSTIQFD----FNLPERF----DMTY 499

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D K H    +    +G++     ++   + G   IW   ++P ++ +I I       
Sbjct: 500 VGPDNKKHRPYMIHRALLGSIERFTGILLEHYAGLLPIW---LSPTQVMIIPIA---DRH 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +K+Y  L + G     D   E++ ++   A+L   P+ ++VG +   ++ V ++ +
Sbjct: 554 HEYAKKVYEFLKENGIRAEMDLREERMNAKIRDAELKKIPVILVVGDREAQNNTVSVRTK 613

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    M L + +++   +  N 
Sbjct: 614 KEGNLGSMELNKFLDWIKEKIKNK 637


>gi|332141950|ref|YP_004427688.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551972|gb|AEA98690.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 572

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 159/235 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRVKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQVQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL    + A+SG IGG+ SHEF VLA++GE  +  S D         
Sbjct: 181 YCAIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAESGEDAIAFSSDSDYAANVEM 235



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 103/193 (53%), Gaps = 3/193 (1%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  T D+ N    D+ P+ +      RGIEVGHIF  G KYS  M+       GK 
Sbjct: 380 NWPNGINTVDIRNVVAGDASPDGQGTLDIKRGIEVGHIFQLGRKYSEAMNCGVLSETGKH 439

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKI 368
             + MG YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +  H     ++A E +
Sbjct: 440 QTLTMGCYGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAVEAL 499

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L  +G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ 
Sbjct: 500 YEELVALGIEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQL 559

Query: 429 MSLEEVINYASHR 441
           + L     + +  
Sbjct: 560 LDLSAAKEFVAAL 572


>gi|148264672|ref|YP_001231378.1| threonyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146398172|gb|ABQ26805.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Geobacter
           uraniireducens Rf4]
          Length = 645

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  W P G      +    R+E  R G
Sbjct: 241 YLARLEEAKRRDHRKLGKELDLFS-FSDEVGAGLVIWHPKGAMLRTILEDFERKEHFRRG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG YD+Y + M    + +++     P +      I++S ++SY
Sbjct: 300 YDIVVGPQILKTELWQRSGHYDNYRENMY-FTEVDEQGYGIKPMNCLAHMMIYKSQLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 359 RDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHIL-CTPEQLDGEIKGVLSFVKDV 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +   M   + P     S E    A                    +         
Sbjct: 418 MGIFGFEY-EMELSTRPEKSIGSDEDWERATKALLGALQDSGRPFEINEGDG-------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + KL D+L    + +    +    F    ++      T+ G
Sbjct: 469 ------------AFYGPKIDIKLRDALDRRWQCATIQCD----FTLPERF----DLTYIG 508

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG K   V +    +GA+     V+     G   +W   +AP +  ++ +  +      
Sbjct: 509 ADGEKKRPVMVHRVILGAIERFIGVLIEHFAGSFPVW---LAPVQAIVLTVTDN---QVS 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +IY  L   G  V  D   E++G +   A L   P  +I+G K V    V  + R  
Sbjct: 563 YANEIYTALRAAGIRVQQDFRNEKLGFKIREAQLQKIPYMLIIGDKEVESGMVTPRFRDG 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
              + M   E+I +      +
Sbjct: 623 NNLDSMKPAELIEFIEKEVKS 643


>gi|222056447|ref|YP_002538809.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221565736|gb|ACM21708.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 645

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 148/442 (33%), Gaps = 44/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R E  +  
Sbjct: 241 YLARIEEAKRRDHRKLGKELDLFS-FSDEVGAGLVIWHPKGAMLRTIIEDFERREHLKRD 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG YD+Y + M    + ++++    P +      I++S ++SY
Sbjct: 300 YDIVVGPQILKTDLWQRSGHYDNYRENMY-FTEVDEQSFGIKPMNCLSHMMIYKSRLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP   +++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 359 RDLPLRLFELGTVHRHERAGVLHGLLRVRCFTQDDAHIL-CTPEQLDSEIKGVISFVQDV 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +   M   + P     S E    A                    +   +   I 
Sbjct: 418 MGVFGFEF-EMELSTRPEKSIGSDEDWDRATNALLGALKDSGRPFEINEGDGAFYGPKID 476

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
           +                             +    R  +   I      ++LP     T+
Sbjct: 477 IKL---------------------------RDSLDRRWQCATI---QCDFTLPERFDLTY 506

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG K   V +    +G++     V+     G   +W   ++P ++ ++ +  +    
Sbjct: 507 IDADGEKKRPVMVHRVILGSIERFIGVLIEHFAGSFPVW---LSPVQVVVLTVTDN---Q 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++YA L   G  V  D   E++G +   A L   P  +++G K V    V  + R
Sbjct: 561 LSFAQQVYAELRAAGLRVQQDFRNEKLGFKIREAQLQKIPYMLVIGDKEVEAGMVTPRFR 620

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                + M   + I +      
Sbjct: 621 DGKNLDSMKCSDFIEFIEKEVK 642


>gi|323698513|ref|ZP_08110425.1| threonyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323458445|gb|EGB14310.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 645

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 155/440 (35%), Gaps = 44/440 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +    +   G+  W P G      +    R+E  + 
Sbjct: 229 QYLNRLEEAKKRDHRKLGKQLDLFS-FSDEVGPGMSLWHPRGMLLRAILEDFERKEHLKR 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   +LW +SG YD+Y + M    + +++A    P +      I++  I S
Sbjct: 288 GYDLVQGPIILKRELWEKSGHYDNYRENMY-FTEIDEQAYGIKPMNCLAHMIIYKRKIMS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  ++++ +  R E      G+MR R F   DA+     P+  +     +   Y  
Sbjct: 347 YRDLPQRYFELGVVHRHEKSGVLHGLMRVRTFTQDDAHLI-CRPDQVEEEILNLIKFYKD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+     +   +   + P     + E   LA  G  Q              +   +   I
Sbjct: 406 IYALFNYEF-DVELSTRPAKSIGTDEDWELATEGLRQALDKSGMPYAINEGDGAFYGPKI 464

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
                                          +    R  + G I      ++LP      
Sbjct: 465 DF---------------------------HLRDSIGRSWQCGTI---QVDFTLPERFDIV 494

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +    +G++     V+     G   +W   +AP +  L+N+      
Sbjct: 495 YVGEDGERHRPVMIHRAMLGSIERFIGVLTEHCAGAYPVW---LAPVQARLLNVT---DA 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K  A L   G  V  D   E++G +   A +   P  +++G K V    V I+ 
Sbjct: 549 QLDFMKKAEAFLVSKGIRVEADTRNEKLGYKIREAQVEKVPYMLVIGDKEVEAGCVNIRS 608

Query: 421 RLTGIREDMSLEEVINYASH 440
           R       ++LEE       
Sbjct: 609 RDGEDPGMVTLEEAAQLILE 628


>gi|172054921|ref|YP_001806248.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171701202|gb|ACB54182.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 644

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 160/446 (35%), Gaps = 40/446 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I +    G+  W P G      +    R+     
Sbjct: 236 YLQQQEEAKRRDHRKLGKELKLFS--IQENAGGGLVFWHPRGATMRYLIEDYWRKAHLDG 293

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + +LW  SG +D Y + M    D  ++A    P +       +++ + S
Sbjct: 294 GYELLYTPHVANLELWKTSGHFDFYRENMFDSMDIEEQAYQIKPMNCPFHVLTYKNDLHS 353

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F L P         +     +
Sbjct: 354 YREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCL-PTQIASEILGVLNLTEK 412

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K   +   + P     + E   LA     +   SK +                
Sbjct: 413 ILSDFGFKDYEVNLSTRPEKSVGTDEGWELATQALVEALNSKSWEYIEDKGGG------- 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++       + 
Sbjct: 466 -------------AFYGPKIDIKIKDAIGRTWQCSTIQVD----FNLPERF----DMEYV 504

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG +   + +     G++     ++  ++ G   +W   +AP ++ L+ +    +  R
Sbjct: 505 AADGSRQRPIMIHRAIFGSLERFYGILIENYAGDFPLW---LAPIQLRLLPV---SEAQR 558

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E + A L + G  V  D  GE++G Q   A+L   P+  IVG+K V    + I+ R 
Sbjct: 559 EYGEAVVATLKEAGYRVEIDCTGERLGKQIRNAELEKIPVVAIVGNKEVETQSLSIRTRQ 618

Query: 423 TGIREDMSLEEVINYASHRFSNNRPV 448
            G    M L E+        +N   +
Sbjct: 619 QGDIGTMDLTELKKSLDDAIANKTNI 644


>gi|303248073|ref|ZP_07334338.1| prolyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302490472|gb|EFL50380.1| prolyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 575

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 128/227 (56%), Positives = 167/227 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E P +AE+ SHKL+LR GMI + + GIY++LPLG KAL+NV  I+REE
Sbjct: 1   MRLSRYYAPTLKETPAEAEVVSHKLLLRAGMIRKLTAGIYTYLPLGLKALNNVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR++ YG+E+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWEFYGRELLRFVDRHEREFCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EIRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDAGADASYWAMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y+RIF RLGLK   + A+SG IGG  SHEF+VLA+TGE  +      
Sbjct: 181 YIRIFERLGLKFRAVSADSGAIGGSFSHEFMVLAETGEDTIAYCDAC 227



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 106/176 (60%), Gaps = 2/176 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 D  P+       A+GIEVGH+F  G KYS  ++ATF    GK+ ++ MG YGIG
Sbjct: 384 RQVAPGDPCPKCGAPLSFAKGIEVGHVFKLGLKYSKSLNATFLDEAGKEQFMIMGCYGIG 443

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+VAA IE ++D  GI++P ++APF+++L+N+ A D       +++Y  L+  G +  
Sbjct: 444 VSRIVAACIEQNNDASGIVFPPAIAPFEVALLNLNAKDAEASAKADELYDALTAAGIETL 503

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DD  E+ GS+F  ADL+GFP+Q+ +G K ++   VE K R TG + ++ L+  ++
Sbjct: 504 LDDREERPGSKFKDADLMGFPIQLTLGGKGLARGIVETKDRRTGEKGELPLDGFMD 559


>gi|332521036|ref|ZP_08397494.1| threonyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332043129|gb|EGI79326.1| threonyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 644

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 163/448 (36%), Gaps = 40/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T    +   G+  WLP G    + +   ++  Q 
Sbjct: 226 LTEYLALLEEAKKRDHRKLGKELELFT-FSQKVGAGLPLWLPKGTALRERLENFLKAAQK 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P +   +L+V SG Y  YG++  +     ++D+  +  P +     +I+ +
Sbjct: 285 KAGYEMVMSPHIGQKELYVTSGHYAKYGEDSFQPIKTPKDDEEFLLKPMNCPHHCEIYNA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +  
Sbjct: 345 SQWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CTPDQLDAEFKNVID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG ++   +                       +   S +  +    +  +  
Sbjct: 404 LVLYVFGSLGFENFTAQVSLRD-------------PENPEKYIGSLENWEKAEQAIISAA 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            D      I     A Y    D   +              R  ++G I      Y+LP  
Sbjct: 451 KDKGLNYVIETGEAAFYGPKLDFMVKDALG----------RQWQLGTI---QVDYNLPER 497

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+KG+D + H  V +     G+M    A++     G   +W   + P ++S++ +  
Sbjct: 498 FDLTYKGSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLW---LMPNQVSILTL-- 552

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      EK+   L         D+  E IG +   A++   P  +I+G     ++K+
Sbjct: 553 -SEKYEKYGEKVLNLLENHEIRALIDNRSETIGKKIREAEMNKTPYMIIIGENEEKENKI 611

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++         +S+E+         + 
Sbjct: 612 SVRQHGGEDLGTISVEDFSEIVKTEINK 639


>gi|77164414|ref|YP_342939.1| prolyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|254434306|ref|ZP_05047814.1| prolyl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|114152222|sp|Q3JCN7|SYP_NITOC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76882728|gb|ABA57409.1| Prolyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207090639|gb|EDZ67910.1| prolyl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 574

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR   I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGSFIRRLAAGLYTWLPLGLRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPAVQPAELWRETGRWEQYGPELLRFTDRHQRFFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQLKFRDE+RPRFGVMRSREFLMKDAYSF         +YN+M+ +
Sbjct: 121 EIRSYKQLPANFYQIQLKFRDEIRPRFGVMRSREFLMKDAYSFHPDQTSLAQTYNQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG  SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFDRIGLTFRAVQADTGAIGGKTSHEFHVLAASGEDAIAFSDKSTYAA 231



 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 107/207 (51%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            +      +      P  +T+D+ N    D  P+ +     ARGIEVGHIF  G KYS  
Sbjct: 362 MEGKHFTGVNWGRDLPEPSTADIRNVVDGDPSPDGEGTLSIARGIEVGHIFQLGEKYSQA 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     G+   + MG YGIG  RVVAA IE +HD  GIIWP S+APF+++L+ I AH
Sbjct: 422 MNATVLDETGRAISLAMGCYGIGVSRVVAAAIEQNHDEHGIIWPASIAPFQLALVPINAH 481

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                ++  +++Y  L   G +V  DD   + G  FA  DL+G P ++++  + + ++ V
Sbjct: 482 KSARVKEMSDRLYTELQAAGFEVLLDDRQLRPGVIFADMDLIGIPYRLVISERGLENNTV 541

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R  G    + L+  I+       
Sbjct: 542 EYKRRQDGKTCAIQLDNFISGLKAELK 568


>gi|257885297|ref|ZP_05664950.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257821149|gb|EEV48283.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 645

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 165/450 (36%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 224 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 282 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + + 
Sbjct: 342 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRT 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + ++    +     R                  D   T  +   D M     +   
Sbjct: 401 LELMVAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLK 446

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D + L+    +     A      + ++  +L   + +S   ++    F    ++   
Sbjct: 447 AAMDELELD--YFEAEGEAAFYGPKLDVQVKTALGTEETLSTIQLD----FLLPERF--- 497

Query: 298 MSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I + 
Sbjct: 498 -DLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVS 553

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ 
Sbjct: 554 V--DAHGDYAYEIKERLQTKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDAT 611

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++   +       L   I+       N 
Sbjct: 612 VNVRRYGSKETAVEDLNIFIDAMEAEVKNY 641


>gi|197286110|ref|YP_002151982.1| prolyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227357229|ref|ZP_03841586.1| prolyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|226701319|sp|B4F249|SYP_PROMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194683597|emb|CAR44486.1| prolyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227162492|gb|EEI47481.1| prolyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 571

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y W+P G + L  +  I+REE
Sbjct: 1   MRTSHYLLSTLKETPADAEIVSHQLMLRAGMIRKLASGLYDWMPTGVRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TDI R+
Sbjct: 61  MDNAGSLEISMPVVQPADLWQESGRWEQYGPELLRFTDRGERPFVLGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y++M+ +
Sbjct: 121 EITSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHISQESLQETYDRMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSNIFTRIGLDFRPVLADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 115/205 (56%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    D  P+ K      RGIEVGHIF  G KYS  +
Sbjct: 366 DGKHYFGINWERDLPLAEMADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +  +G +  V MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQNEEGHNQVVTMGCYGIGITRIVAAAIEQNHDARGIIWPDAIAPFQVAILPMNMHR 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + + + +VE
Sbjct: 486 SYRVKEVAEKLYADLRAQGIDVLFDDRKERPGVMFADMELIGVPHTIVIGDRNLDNEQVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K R +  +  +++ +V+ +   + 
Sbjct: 546 YKARRSDDKSLVNVNDVVAFIKEQL 570


>gi|239907072|ref|YP_002953813.1| prolyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259511592|sp|C4XTD0|SYP_DESMR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239796938|dbj|BAH75927.1| prolyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 575

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 131/229 (57%), Positives = 166/229 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E P +AE+ SHKL+LR GMI + + GIY++LPLG KAL+NV  I+REE
Sbjct: 1   MRLSRYYAPTLKETPAEAEVISHKLLLRAGMIRKLTAGIYTYLPLGLKALNNVAKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR+D YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWDFYGRELLRFVDRHDRESCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDSGADASYWGMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y RIF RLGLK   + A+SG IGG  SHEF+VLADTGE  +        
Sbjct: 181 YARIFKRLGLKFRAVAADSGAIGGSFSHEFMVLADTGEDTIVACPACDY 229



 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 2/180 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+      D  P+        +GIEVGH+F  G KYS  ++ATF    GK+ ++ MG 
Sbjct: 380 YTDLREVAPGDPCPKCGALLDFTKGIEVGHVFKLGLKYSKALNATFLDEAGKEQFMIMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+VA+ IE +HD  GI++P ++APF+ +LIN+   D+      ++IYA L+  G
Sbjct: 440 YGIGVSRIVASAIEQNHDDGGIVFPPTIAPFEAALINLSPKDETACAKADEIYAALTAAG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +   DD  E+ G +F  ADL+G P+Q+ +G K ++   VE K R TG + ++ LE    
Sbjct: 500 IETLLDDRDERPGVKFKDADLMGHPIQLTLGGKGLARGIVETKDRRTGEKGELPLEGFFE 559


>gi|251772034|gb|EES52606.1| threonyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 587

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 154/443 (34%), Gaps = 44/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           Y   + +   RD      +     G      ++  G+  WLP G +    +  I +   +
Sbjct: 178 YLARLEEIRQRDHRKIGKE----QGFFRTLDENGAGMVLWLPRGARIRRVIEEIWKTRHD 233

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   DLW +SG +D Y + M    +         P +      IF+  +
Sbjct: 234 RHGYQYVYTPHIARLDLWKQSGHWDFYRESMFSPMEIEGSEFELKPMNCPFHILIFKEAV 293

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    ++   +R E      G++R R F   DA+ F   PE       K+    
Sbjct: 294 KSYRDLPVRLAELGTVYRYERSGTLHGLLRVRGFTQDDAHIF-CRPEDIASEIGKVLTLV 352

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    G  +  +   + P G   S E   LA     +   +        P E   +  
Sbjct: 353 DEMLLPFGFTNRSVYLSTRPEGSVGSDENWALATGALEEALKNAGIPYEIDPGEGVFYGP 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I +                    K  D L    ++S   ++    F    K+      T
Sbjct: 413 KIDM--------------------KFHDVLGRTWQLSTIQVD----FNLPEKF----DIT 444

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++ + G D   + +    +G++     ++     G   +W   +AP +++++ I      
Sbjct: 445 YRDSSGNDVRPIMIHRALLGSVERFFGILVEHFKGAFPLW---LAPEQVTILPIA---DR 498

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 KI   L + G  V  D   E+IG++   A L+  P   ++G +   D  + I+H
Sbjct: 499 HIPYARKIAETLEQEGVRVVTDFRNEKIGAKIRDAQLMKIPQMWVLGDREAQDETISIRH 558

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       +   E +        
Sbjct: 559 RDGQAGGTLPWREALVAIKEEIR 581


>gi|138894777|ref|YP_001125230.1| prolyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166980126|sp|A4IMD1|SYP_GEOTN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134266290|gb|ABO66485.1| Prolyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 567

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 162/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G + Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQGFIPTLREVPADAEVKSHQLLLRAGFVRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++  + GPTHEE++T I R 
Sbjct: 61  MNRAGALELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFVLGPTHEEMITTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLILYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S 
Sbjct: 181 YANIFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSD 225



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/248 (33%), Positives = 123/248 (49%), Gaps = 15/248 (6%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG  +S E  ++AD     +          +   N +      +N   +   + YA
Sbjct: 332 SLGPIG--VSEEVTIIADHAVAAIVNG-------VCGANEEGYHYTGVNPDRDFAVSQYA 382

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   +  D  P+        RGIEVGH+F  GTKYS  M+A +   +G+   + MG
Sbjct: 383 ---DLRFVQEGDPSPDGNGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENGRTQTMIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+VAA+ E   D  G++WP SVAPF + L+   A     R   E+ Y +L + 
Sbjct: 440 CYGIGVSRLVAAIAEQFADENGLVWPVSVAPFHVHLLTANAKSDEQRMLAEEWYEKLGQA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G +FA +DL+G PL+V VG +  S+  VE+K R TG   D+ + E+I
Sbjct: 500 GFDVLYDDRPERAGVKFADSDLIGIPLRVTVGKR-ASEGVVEVKVRKTGETFDVPVGELI 558

Query: 436 NYASHRFS 443
                   
Sbjct: 559 ETVRRLLQ 566


>gi|90408309|ref|ZP_01216474.1| prolyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90310610|gb|EAS38730.1| prolyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 573

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/292 (44%), Positives = 172/292 (58%), Gaps = 1/292 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DA I SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTTQYLLSTQKEAPSDAVIVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q ADLWVE+GR+D YG E+LRL DR+D+  + GPTHEEV+T++ R 
Sbjct: 61  MERAGAVEILMPVVQPADLWVETGRWDKYGGELLRLKDRHDRDFVLGPTHEEVVTELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE RPRFGVMRSREF MKDAYSF L  E  + +Y  MF +
Sbjct: 121 EINSYKQLPLNLFQIQTKFRDETRPRFGVMRSREFTMKDAYSFHLEDECLEKTYQTMFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A+SG IGG+ SHEF VLA +GE  +  S +        +     
Sbjct: 181 YCRIFERLGLEYRPVIADSGSIGGNSSHEFHVLAPSGEDAIAFSSESDYAANVEKAEALA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                 +                 E +  +L      + + + V  I   G 
Sbjct: 241 PTFDRPAATLDVKTLETPNVHS-IEDVCQALNVPATQTLKTLLVEGIAQEGQ 291



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 1/196 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +          A      E       +      RGIEVGHIF  G  YS  M+A+     
Sbjct: 376 NWDRDIKDYETADLRNVQEGDLSPCGKGTLSITRGIEVGHIFQLGKTYSEAMNASVLNQQ 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDAC 365
           GK+  + MG YGIG  R+VAA IE ++D  GIIW +++APF + ++ +         D  
Sbjct: 436 GKNQTLTMGCYGIGISRIVAAAIEQNNDANGIIWNEALAPFSVVIVPMNMKKSHRVADLA 495

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E+ YA L   G +V +DD  E+ G  FA A+L+G P  +I+G + + +  +E K+R +G 
Sbjct: 496 ERYYAELQAAGIEVLFDDRKERPGVMFADAELIGIPHMLIIGDRSIDNGVIEYKNRKSGE 555

Query: 426 REDMSLEEVINYASHR 441
           ++D+ +E+VI +   +
Sbjct: 556 KQDVKIEDVIAFIKEQ 571


>gi|319653813|ref|ZP_08007907.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317394349|gb|EFV75093.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 399

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 166/438 (37%), Gaps = 41/438 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++    +      +L L T M  + + G+  +LP G    + + +  R +  R G  E+ 
Sbjct: 1   MEAEKINHRKLGQELELFTSM--EEAPGMPFFLPNGMVMRNELESYWRRKHQRAGYQEIK 58

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +   +LW +SG ++ Y + M   ++ +++     P +      +F S  +SYR LP 
Sbjct: 59  TPIMMKQELWEQSGHWNHYHENMY-FSNVDEQNYAIKPMNCPGAILVFNSKRRSYRELPL 117

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++ L  R EL     G++R R F   DA+ F +  +  +   +K+ V     +   G
Sbjct: 118 RYAELGLVHRHELSGSLNGLLRVRSFTQDDAHLFVM-ADQIEAEIDKILVLIDEFYSHFG 176

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P     S E    A+     V  +K       P +              
Sbjct: 177 FDY-KVELSTRPEEYMGSQEMWERAEGALESVLKNKGVNYQINPGDG------------- 222

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  A      +  + DSL  + +     ++    F    K+    +  + G D K 
Sbjct: 223 -------AFYGPKIDFHILDSLGRSWQCGTIQLD----FQMPQKF----NCAYVGEDNKL 267

Query: 310 H-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H  + +     G++    A++     G   +W   ++P +  +I I        +  + +
Sbjct: 268 HLPIMIHRAIFGSVERFMAILIEHFAGDFPLW---LSPVQAKIIPI---SDSHAEYADYV 321

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ++L + G     D   E++G +   A     P  +++G K +    + ++ R  G    
Sbjct: 322 KSQLEEAGIRAEADFRTEKMGLKIREAAKQKVPYMLVIGDKEMEQQSLSLRKRKEGNIGV 381

Query: 429 MSLEEVINYASHRFSNNR 446
           MS+++VI    +  +  R
Sbjct: 382 MSIKDVIERFINETNGGR 399


>gi|317493988|ref|ZP_07952404.1| prolyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917761|gb|EFV39104.1| prolyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 572

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 124/225 (55%), Positives = 164/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWMPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KMF +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTSQESLQETYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  V  S 
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLAQSGEDDVVFSS 225



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKY+  +
Sbjct: 366 DGKHYFGINWERDLPLPLVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQLMTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +D  E +Y  L   G DV  DD  E+ G  FA  +L+G P  V++G + +   ++E
Sbjct: 486 SFRVKDLAESLYNSLRSKGIDVIMDDRKERPGVMFADMELIGVPHTVVIGDRNLDSDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E+ ++   +  
Sbjct: 546 YKNRRNGEKQMIKTGEIEDFLLAQIK 571


>gi|197118372|ref|YP_002138799.1| threonyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|238690868|sp|B5EBX9|SYT_GEOBB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|197087732|gb|ACH39003.1| threonyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 636

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 88/445 (19%), Positives = 157/445 (35%), Gaps = 44/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R+E  + G
Sbjct: 232 YLARIEEAKKRDHRKLGRELDLFS-FNDEVGAGLVIWHPKGAMLRTILEDFERKEHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG Y++Y + M      ++++    P +      I+RS ++SY
Sbjct: 291 YDIVLGPQILKTELWQRSGHYENYRENMYFTTV-DEQSYGVKPMNCLAHMMIYRSQLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 350 RDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHIL-CTPEQLDAEIKGVIQFVTEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +   M   + P     S +   LA                   +      D   
Sbjct: 409 MGIFGFEF-EMELSTRPEKSIGSDDAWELA-----------------TNALLNALKDSGR 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              I E   A Y    D+      D          R  +   I      ++LP     T+
Sbjct: 451 PYEINEGDGAFYGPKIDIKLRDALD----------RRWQCATI---QCDFTLPERFDLTY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG K   V +    +GA+     V+     G    W   +AP + +++ +  +    
Sbjct: 498 VDADGEKKRPVMVHRVILGAIERFIGVLIEHFAGNFPTW---LAPVQATIVTVTDN---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +  + +L   G  V  D   E++G +   A L   P  ++VG K V    +  + R
Sbjct: 552 IPYAQAAFDKLRAAGIRVQKDFRNEKLGFKIREAQLQKIPYMLVVGDKEVESGMLAPRFR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                E M+ E+ +++      + +
Sbjct: 612 DGKNLESMTPEQFVSFIESEVKSYK 636


>gi|27820035|gb|AAO25049.1| GM03563p [Drosophila melanogaster]
          Length = 458

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 214/463 (46%), Gaps = 44/463 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G +   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGFVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +            
Sbjct: 182 YTVVNAAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSSCGFA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F  G K
Sbjct: 239 -----------------------GNSEVVKAPASCPSCNSSDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +   +A       L  VG      ++  DD  E  IG +   A  LG PL ++VG
Sbjct: 336 PKQGSKEQPEAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVG 395

Query: 408 SKF--VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +K   +   K+E+     G   ++   E +   +    + + +
Sbjct: 396 AKSARLDSPKLEVHT-SKGETYELDFSETLKLVAEHSQHKKSL 437


>gi|327188321|gb|EGE55539.1| threonyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 668

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 151/451 (33%), Gaps = 54/451 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + A +R     
Sbjct: 234 YLHML----AEAEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-A 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
               E++ P +    LW  SG +  Y + M  +            + +++     P +  
Sbjct: 289 ADYQEVNAPQVLDTSLWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F  T E   
Sbjct: 349 GHVQIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMA 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               K+    L ++   G K I ++  + P     S      A+   T V  +       
Sbjct: 408 AECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKT------- 460

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                    +  S   I         A      E         K    R  + G      
Sbjct: 461 --------IEAQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---Q 503

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +  ++  K   V +     G+M     ++  +  G   +W   V+P +
Sbjct: 504 VDFNLPERFGAFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---VSPLQ 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +          ++   L   G +V  D   E+I  +     +   P+ ++ G 
Sbjct: 561 VVVATITS---EADAYGLEVAEALRDAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGR 617

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           K   +  V I+   +  +  M L+  +   +
Sbjct: 618 KEAEERTVNIRRLGSQDQVSMELDAAVESLT 648


>gi|328957059|ref|YP_004374445.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673383|gb|AEB29429.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 645

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 165/446 (36%), Gaps = 38/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K F+ + +E   RD      +L L   MI  +   G+  WLP G      +   I + + 
Sbjct: 229 KEFIKMREEAKLRDHRKLGKELDLF--MISPEVGSGLPFWLPKGATIRRTIERYIVDREI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSH 121
             G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ 
Sbjct: 287 SLGYQHVYTPIMADVNLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKND 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++    R E      G+ R RE  + D ++F + P+  +  + +    
Sbjct: 347 VHSYRELPIRIAELGQMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIEEEFKRTLEL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L ++    +     R                  D   T+ +   D M     +      
Sbjct: 406 MLAVYGDFNITDYRFRLSYR--------------DPNNTEKYYDDDGMWEKAQTMLKAAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      +  +  ++   + +S   ++    F    ++      
Sbjct: 452 DDMELD--YFEAEGEAAFYGPKLDVLVKTAIGIEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I +    
Sbjct: 502 TYVGEDGENNHRPVVIHRGIVSTMERFVAYLIEEYKGAFPTW---LAPVQATIIPVNL-- 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            +  D   +I  +L  +G  V  D+  E++G +   +     P Q++VG   V D+ V +
Sbjct: 557 DMHTDYAYEIKKQLESIGMRVDVDERNEKMGYKIRASQTQKIPYQLVVGDSEVQDNTVAV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           +       E + L + I   S    N
Sbjct: 617 RKYGEKATETIGLNDYIEKVSSEIKN 642


>gi|270290442|ref|ZP_06196667.1| threonyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|304384676|ref|ZP_07367022.1| threonine--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|270281223|gb|EFA27056.1| threonyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|304328870|gb|EFL96090.1| threonine--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 647

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 163/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  + L L    +  +   G+  W+P G      +   I +++ + G   + 
Sbjct: 238 EARERDHRVIGNDLDLF--FVDPEVGAGLPYWMPNGATIRRTIERYIIDKEVQHGYQHVY 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +  Y ++M    D  D  M+   P +      +++ HI+SYR LP
Sbjct: 296 TPVLMNLDAYKTSGHWQHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELP 355

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F   P+  +  + K+    + ++   
Sbjct: 356 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-PDQIQEEFKKVLQLMVEVYRDF 414

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S      D + L+ +
Sbjct: 415 DITDYTFRLSYR--------------DPENTEKYFDDDEMWNHSQSMLKAAMDDLGLDYV 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + +   +L   + +S   ++                  + GADG+
Sbjct: 461 EA--EGEAAFYGPKLDVQTKTALGNEETLSTIQLDFMLPKQ--------FDLHYVGADGE 510

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G+ + M    A +   + G    W   +AP ++++I +K  D +  +  +K
Sbjct: 511 EHRPVMIHRGLVSTMERFTAYLIEMYKGAFPTW---LAPKQVTIIPVK--DDLHGEYADK 565

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +++     V  D   E++G +   A     P  ++VG   +  + V ++       +
Sbjct: 566 LREQMADQDIRVEVDHRNEKMGYKIREAQTQKIPYILVVGDNEMDSNAVSVRRYGEDDSQ 625

Query: 428 DMSLEEVINYASHRFSNN 445
            +S+++ +        + 
Sbjct: 626 TVSVDQFMQDIKADIDSY 643


>gi|46580942|ref|YP_011750.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601757|ref|YP_966157.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|81566250|sp|Q728R5|SYT_DESVH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987320|sp|A1VBB4|SYT_DESVV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46450362|gb|AAS97010.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561986|gb|ABM27730.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Desulfovibrio
           vulgaris DP4]
 gi|311234632|gb|ADP87486.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 644

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 158/442 (35%), Gaps = 41/442 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  ++E  R D      +L L        + G+  W P G      +   +R+E
Sbjct: 225 KTLKEHLHRIEEAKRRDHRKLGQQLDLFAFH-EDVAPGMVFWHPKGMLVRTIIEDFLRKE 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +     +  P L   +LW +SG YD+Y + M    + ++ A    P +      I+RS
Sbjct: 284 HLKRRYDIVQGPQLLRRELWEKSGHYDNYRENMY-FTEIDENAYGVKPMNCLAHMLIYRS 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I+SYR+LP  F+++ +  R E      G++R R+F   DA+     P+  +     +  
Sbjct: 343 AIRSYRDLPKRFFELGVVHRHEKSGVLHGLLRVRQFTQDDAHII-CRPDQLEDEIIDVIA 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               + +  G     +   + P     S E   LA     +              +    
Sbjct: 402 LVRDLMNLFGFDY-KVAVSTRPEKSIGSDEAWELATNALVKAVERAGIPYTINEGDG--- 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + +L D +    + S    +    F    ++     
Sbjct: 458 -----------------AFYGPKIDVRLMDCIGREWQCSTIQCD----FTLPERF----D 492

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DG+ H   M     +G++     V+   + G    W   +AP +  L+ +    
Sbjct: 493 LVYVGQDGERHRPVMVHRAILGSLERFIGVLIEQYAGAFPAW---LAPVQARLLTVT--- 546

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  E   A L+K G  V  D   E++G +   A L   P  ++VG K V    V +
Sbjct: 547 DAQNEFVESARAALAKAGIRVEADVRNEKLGYKVREAQLEKIPYILVVGDKEVEAGGVNV 606

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R        SL+EV++    
Sbjct: 607 RLRTGENLGLKSLDEVVSLLES 628


>gi|319938817|ref|ZP_08013181.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811867|gb|EFW08133.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 650

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 171/446 (38%), Gaps = 37/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      V   I + + 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISPEVGQGLPFWLPDGATIRRIVERYITDREV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +     +++++H
Sbjct: 287 NDGYQHVYTPPLASVELYKTSGHWEHYQEDMFPPMDMGDGEQFVLRPMNCPHHIEVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D++ F + PE  +  +  +   
Sbjct: 347 VHSYRELPIRIAELGMMHRFEKSGALSGLQRVREMTLNDSHLFVM-PEQIQEEFKHVLDL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    +     R                  D  +   +   D M            
Sbjct: 406 MIDVYKDFNITDYRFRLSYR--------------DPNDKHKYFDNDEMWENAQRMLKGAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DDLGLD--YFEAEGEAAFYGPKLDVQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   GI + M    A +  ++ G    W   +AP ++++I I   ++
Sbjct: 502 HYVGADGEEHRPVMIHRGIVSTMERFIAYLIETYKGAFPTW---LAPHQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K  +D  V ++
Sbjct: 557 AHADYAWKVAKELRNRGVRVDVDERNEKMQYKIRQSQTHKVPYQLIVGDKEQADGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                     ++ E +N+     +  
Sbjct: 617 RYGQKQTHTETIAEFVNHILADIARK 642


>gi|284919690|emb|CAX65467.1| hypothetical protein [Enterobacter hormaechei]
          Length = 662

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L    E   +AE   H+ + R         ++ G   W P G     ++ A +R 
Sbjct: 245 ASKKQLDGWLEKTAEAEKRDHRKLGRELDLFHFQDNAPGAVFWHPRGWTIFQSLIAYMRS 304

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G +E++ P +    LW  SG +D+Y   M      + +     P +      +F+
Sbjct: 305 RHEVAGYVEVNTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFK 364

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             IKSYR+LP    +     R E      G++R R F   DA+ F  T +  +     + 
Sbjct: 365 YGIKSYRDLPVRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTLQQVEGECKSIL 423

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I+ + G + + ++  + P     S       +   +    ++       P E   
Sbjct: 424 QLVLDIYKQFGFEEVAIKLSTRPEKRMGSDADWDRLENALSASLEAQGLQWSVNPGEGAF 483

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               +    R  + G         +LP 
Sbjct: 484 YGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDMNLPE 513

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG     V +     G++     ++   + GK   W   ++P +  ++ I 
Sbjct: 514 RFDIGYIAEDGSTKRPVMLHRALFGSLERFTGILLEHYVGKLPAW---LSPVQAVVMTIT 570

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++   L K G     D   E+IG +     L   P  +IVG    + ++
Sbjct: 571 DKQHH---YAEQVLKALRKKGLRCEADLRNEKIGFKIREQTLARIPFLLIVGDAEENAAR 627

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           V ++ R       + L E  +   
Sbjct: 628 VTVRDRTGRCMGTLLLNEAADAIK 651


>gi|330959255|gb|EGH59515.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 571

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +++YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDRLYAELTGAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|325569916|ref|ZP_08145910.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325157039|gb|EGC69207.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 646

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 167/446 (37%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIRLREEAKERDHRKLGKELELFM-LSPEVGAGLPFWLPKGATIRRTIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P + + DL+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMANVDLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKEEFKRTLDLM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D      +   D M     +      D
Sbjct: 407 VGVYEDFNITDYRFRLSYR--------------DPQNKDKYFDDDAMWENAQTMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEADGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + S+I +    +
Sbjct: 503 YVGEDGENNHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQASIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   +I  RL   G  V  DD  E++G +   +     P Q++VG + V+D+ V I+
Sbjct: 558 AHSDYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKIPYQIVVGDQEVNDATVNIR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +   +   L   ++  +    N 
Sbjct: 618 RYGSKETQVEELNLFVDAMAAEVKNY 643


>gi|315222497|ref|ZP_07864386.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188183|gb|EFU21909.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 650

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 171/443 (38%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      V   I + + 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISPEVGQGLPFWLPDGATIRRIVERYITDREV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P L S DL+  SG ++ Y ++M    D  D +  +  P +     +++++H
Sbjct: 287 NDGYQHVYTPPLASVDLYKTSGHWEHYQEDMFPPMDMGDGEQFVLRPMNCPHHIEVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D++ F + PE  +  +  +   
Sbjct: 347 VHSYRELPIRIAELGMMHRFEKSGALSGLQRVREMTLNDSHLFVM-PEQIQEEFKHVLDL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    +     R                  D  +   +   D M            
Sbjct: 406 MIDVYKDFNITDYRFRLSYR--------------DPNDKHKYFDNDEMWENAQRMLKGAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      + ++  +L   + +S   ++    F    ++      
Sbjct: 452 DDLGLD--YFEAEGEAAFYGPKLDVQVKTALGNEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H   M   GI + M    A +  ++ G    W   +AP ++++I I   ++
Sbjct: 502 HYIGADGEEHRPVMIHRGIVSTMERFIAYLIETYKGAFPTW---LAPHQVTVIPIS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K  +D  V ++
Sbjct: 557 AHADYAWKVAKELRNRGVRVDVDERNEKMQYKIRQSQTHKVPYQLIVGDKEQADGTVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
              +      ++ E +N+     
Sbjct: 617 RYGSKQTHTETVAEFVNHILADI 639


>gi|311031377|ref|ZP_07709467.1| threonyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 643

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 166/437 (37%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRLLEEAKERDHRKIGKELDLFFN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEVELGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S +L+  SG +D Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 294 DHVYTPVMGSVELYKTSGHWDHYQDGMFPPMEMDNEQLVLRPMNCPHHMMVYKNSIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F + P+  K    ++    L ++
Sbjct: 354 QLPVRIAELGTMHRYEMSGALAGLQRVRGMTLNDAHIF-VRPDQIKDELKRVVNLVLEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                  D    + +   D M         +  D + L
Sbjct: 413 KDFGLDDYSFRLSYR--------------DPENKEKYFDDDAMWEKAQGMLKEAMDELGL 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L + + +S   ++    F    K+      T+ G 
Sbjct: 459 D--YFEAIDEAAFYGPKLDVQVRTALGKEETLSTVQLD----FLLPEKF----DLTYVGE 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   G+ + M    A +   + G    W   +AP ++ +I +        D 
Sbjct: 509 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--DAHFDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++   L   G  V  D+  E+IG +   A +   P  +++G   + +  V ++     
Sbjct: 564 AKEVQDLLKSKGIRVEMDERNEKIGYKIREAQMQKIPYMLVLGDNEIQERAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHR 441
             E +SLE+ ++     
Sbjct: 624 KSETISLEKFVDDLLKE 640


>gi|304309881|ref|YP_003809479.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301795614|emb|CBL43813.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 647

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 149/431 (34%), Gaps = 41/431 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD       L L      + + G+  W P G      V   +R+ 
Sbjct: 238 KELKAHLTLLEEAAKRDHRRIGKDLDLFHQ--QEEAPGMVFWHPKGWAIWQKVEQYVRKV 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              +G  E+  P +    LW +SG +++Y + M    +   +     P +      I+ +
Sbjct: 296 YRESGYQEVRGPQILDVSLWKKSGHWENYQENMF-FTESEKRTYAVKPMNCPGHVQIYNN 354

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR LP  + +     R+E      G+MR R F   D + F  T +  +        
Sbjct: 355 TLHSYRELPIRYAEFGGCHRNEPSGALHGIMRVRAFTQDDGHIF-CTEDQVQAEVTAFHR 413

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             ++++   G ++I ++    P     + +    A+ G      +       +P E   +
Sbjct: 414 QAMKVYADFGFENISVKLALRPDKRIGTEDAWDKAENGLRAALAAAGVAWEELPGEGAFY 473

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I                               K    R  ++G I  F       ++
Sbjct: 474 GPKIEY---------------------------HLKDSIGRAWQMGTI-QFDPMMPERLN 505

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   + +    + +    +G+M     V+     G   +W   ++P  + +  I    
Sbjct: 506 AEYVDENSQRQRPIMLHRAIVGSMERFIGVLIEHFAGNFPLW---LSPVPVVVATITDD- 561

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              RD  E + A+L   G     D   E+IG +         P   +VG +  ++ KV I
Sbjct: 562 --ARDWAETVVAQLKAAGIQAEADLRNEKIGYKVREHSNAKIPQIWVVGKQEAAEQKVAI 619

Query: 419 KHRLTGIREDM 429
           +   +   E +
Sbjct: 620 RRLGSQQNEVV 630


>gi|148256517|ref|YP_001241102.1| threonyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|146408690|gb|ABQ37196.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Bradyrhizobium
           sp. BTAi1]
          Length = 688

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 152/455 (33%), Gaps = 52/455 (11%)

Query: 2   RRSKY--FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R+ +   +L  ++E    AE   H+ + R        +   G+  W P G      + A 
Sbjct: 257 RQEQLDAYLKQIEE----AEKRDHRKLGRELDLFHFQEEGPGVVFWHPKGWSIFQALIAY 312

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHE 111
           +R         E++ P +    LW  SG ++ Y + M           + +     P + 
Sbjct: 313 MRRRLAGE-YDEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNC 371

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGS 170
                IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +  
Sbjct: 372 PGHVQIFKHGLKSYRDLPLRLAEFGVVHRYEASGAMHGLMRVRGFTQDDAHIF-CTEDQL 430

Query: 171 KHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                K+    L  +   G +  + ++  + P     + E    A+     V        
Sbjct: 431 AEECLKINDLILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAERVMATVLNE----- 485

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                           N+I  +      A      E +       +    R  + G    
Sbjct: 486 -----------IKAQRNNIRTEINPGEGAFYGPKFEYVL------RDAIGRDWQCGTT-- 526

Query: 290 FGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               ++LP    A +  ADG K   V +     G+M     ++   + G   +W   +AP
Sbjct: 527 -QVDFNLPERFGAFYIDADGAKKAPVMVHRAICGSMERFIGILIEHYAGSFPLW---LAP 582

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ +  I +      +  +++ A L + G     D   E+I  +     +   P  ++V
Sbjct: 583 TQVVVTTITSEGD---EYAKQVLAALRRAGLRAEIDLRNEKINYKVREHSMQKIPALLVV 639

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G K      V ++      +  M   + I      
Sbjct: 640 GKKEAETHSVSVRRLGRDGQTVMPTADAIAALVDE 674


>gi|195492914|ref|XP_002094195.1| GE21696 [Drosophila yakuba]
 gi|194180296|gb|EDW93907.1| GE21696 [Drosophila yakuba]
          Length = 458

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 137/465 (29%), Positives = 217/465 (46%), Gaps = 46/465 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMLLAGGQKITLPILTPTALWRKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  S    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD+  E ++ +
Sbjct: 122 TAMLASTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVCEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A++G +GG +SHE+  ++  GE  +            
Sbjct: 182 YSVVNAAYDRLFKQLEVPFVKVNADTGMMGGSVSHEYHYVSAVGEDNLLQCSSCGFA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    T  V       S         RG+EV H F  G K
Sbjct: 239 -----------------------GNTEVVKTPASCPSCNSTDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTKGKPQSLVMGCYGIGITRVIAAALEVLSSDHELHWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARL-SKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
            K   +   +  E I   L   VG      ++  DD  E  IG +   A  LG PL ++V
Sbjct: 336 PKQGSKEQSE-AEMIENELVLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLIIVV 394

Query: 407 GSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           G+K +     K+E+     G   ++ L E +   +      + ++
Sbjct: 395 GAKAIRQDSPKLEVHT-SKGETLELDLSETLKLVAEHSQYKKSLI 438


>gi|222086050|ref|YP_002544582.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
 gi|254783503|sp|B9JFG4|SYT_AGRRK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221723498|gb|ACM26654.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
          Length = 662

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 149/445 (33%), Gaps = 48/445 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L IL     +AE   H+ + R        +   G+  W   G +    + + +R     
Sbjct: 234 YLHIL----AEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVSYMRRRLEG 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 290 -DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + + ++  + P            A++   +V  +             
Sbjct: 408 NDLILSVYEDFGFEEVVVKLSTRPEKRVGDDALWDRAESVMMEVLKT------------- 454

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E         K    R  + G        ++LP
Sbjct: 455 --IEAQSGGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNLP 503

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +      K   V +     G+M     ++  +  G   +W   V+P ++ +  I
Sbjct: 504 ERFGAFYIDQHSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---VSPLQVVVATI 560

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +         E++   L   G  V  D   E+I  +     +   P+ ++ G K   + 
Sbjct: 561 TS---EADGYGEEVAEALRDAGLTVETDFRNEKINYKIREHSVTKVPVIIVCGKKEAEER 617

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
            V I+   +  +  MSL+E I   S
Sbjct: 618 SVNIRRLGSQAQTAMSLDEAIASLS 642


>gi|146339967|ref|YP_001205015.1| threonyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|146192773|emb|CAL76778.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Bradyrhizobium sp. ORS278]
          Length = 688

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 145/446 (32%), Gaps = 45/446 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W P G      + A +R       
Sbjct: 264 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHPKGWSIFQALIAYMRRRLAG-D 320

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M           + +     P +      IF+ 
Sbjct: 321 YDEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKH 380

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +       K+  
Sbjct: 381 GLKSYRDLPMRLAEFGVVHRYEASGAMHGLMRVRGFTQDDAHVF-CTEDQLAEECLKIND 439

Query: 180 SYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  +   G +  + ++  + P     + E    A+     V                 
Sbjct: 440 LILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAERVMATVLNE-------------- 485

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
                  N I  +      A      E +       +    R  + G        ++LP 
Sbjct: 486 --IKAQNNHIRTEINPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLPE 534

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A +  ADG K   V +     G+M     ++   + G   +W   +AP ++ +  I 
Sbjct: 535 RFGAFYIDADGAKKAPVMVHRAICGSMERFIGILIEHYAGSFPLW---LAPTQVVVTTIT 591

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      +  +++ A L + G     D   E+I  +     L   P  ++VG K      
Sbjct: 592 SEGD---EYAKQVLAALRRAGLRAEIDLRNEKINYKVREHSLQKIPALLVVGKKEAETHS 648

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++      +  M   + I      
Sbjct: 649 VSVRRLGRDGQTVMPTADAIAALVDE 674


>gi|257124962|ref|YP_003163076.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257048901|gb|ACV38085.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 636

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 170/441 (38%), Gaps = 46/441 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + +H  G   ++P G +  + +  I R E  + G
Sbjct: 230 YLTMMEEAEKRDHRKLGKQLDLF--FVDEHGPGFPFFMPKGVELFNKLQEIWRVEHKKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW  SG + +Y + M   +  ++K     P +       +++++ SY
Sbjct: 288 YQEIKTPIMLDKELWEISGHWFNYRENMYT-STIDEKEYAIKPMNCPGSIIAYKNNLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  + ++ L  R E      G+MR R F   DA+ F  T E  +    ++   Y + 
Sbjct: 347 KDLPLKYGEMGLVHRHEFSGALHGLMRVRAFTQDDAHVF-CTKEQIEEQIIEIIDLYDKF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   +A+         K       P +   +   I 
Sbjct: 406 YTVFGFEY-HIELSTKPDKAIGSDEIWEMAEANLKSALEHKGINYKLNPGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      ++LP     ++
Sbjct: 465 FK---------------------------MKDSIGRIWQCGTI---QLDFNLPARFEMSY 494

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H  V +     G++     ++   + G    W   +AP +  ++ I       
Sbjct: 495 IGADGEKHEPVMIHRAMYGSLERFIGILIEHYAGAFPTW---LAPVQARILTI---SDEQ 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKH 420
               ++++ +L   G  V  D   E+IG +   A+ +   P+Q+I+G   V++++V ++ 
Sbjct: 549 VPFAKELFIKLQDAGIRVELDTRVEKIGYKIREANGVQKIPVQLIIGKNEVANNEVNVRR 608

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +   +++S++E+I      
Sbjct: 609 FGSQDSKNVSVDEIIETLKQE 629


>gi|159028099|emb|CAO87176.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 618

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 156/449 (34%), Gaps = 40/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
              Y     +   RD      KL L +  I +    G+  W P G      +    R+  
Sbjct: 207 LQNYLQQKEEAQRRDHRKLGQKLKLFS--IQEDAGGGLVFWHPRGATMRYLIEDYWRQAH 264

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P L + DLW  SG +D Y   M    +   ++    P +       +++ 
Sbjct: 265 LEAGYQFLYTPHLANLDLWKTSGHWDFYRDNMFEAIELEQQSYQIKPMNCPFHVLTYQND 324

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR  P  + ++   +R E      G+MR R F   DA+ F L PE        +   
Sbjct: 325 LHSYREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCL-PEQIAAEILGVLNL 383

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +I    G  +  +   + P     S     LA     +   +K +             
Sbjct: 384 TEKILSDFGFTNYQINLSTRPSKSVGSDSVWELATAALIEALNAKKWDYIEDQGGG---- 439

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D++    + S   ++    F    ++      
Sbjct: 440 ----------------AFYGPKIDIKIQDAIGRMWQCSTIQVD----FNLPERF----DM 475

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG ++  + +     G++     ++  ++ G   +W   +AP ++ L+ +    Q
Sbjct: 476 QYVARDGSRERPIMIHRAIFGSLERFFGILIENYAGDFPLW---LAPIQVRLLPVSDEQQ 532

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++  +L + G  V  D  GE++G Q    +L   P+  ++G + VS   + I+
Sbjct: 533 H---YALEVAVQLKQAGYRVEIDKSGERLGKQIRTGELEKIPVLAVIGKREVSSKTLSIR 589

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R  G    M+L +++        +   +
Sbjct: 590 TRQGGDLGSMTLADLLEKMQTAILSKTNL 618


>gi|241204765|ref|YP_002975861.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858655|gb|ACS56322.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 661

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 150/445 (33%), Gaps = 49/445 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + A +R     
Sbjct: 234 YLHML----AEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRVFQTLVAYMRRRLAG 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 290 -DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIF 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 349 KHGLKSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKI 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   + ++  + P     S +    A++    V  +             
Sbjct: 408 NDLILSVYKDFGFDEVTIKLSTRPDKRVGSDDLWDRAESVMMGVLETIQQ---------- 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                   N+I         A      E         K    R  + G        ++LP
Sbjct: 458 ------QSNNIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNLP 502

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +  ++  K   V +     G+M     ++  +  G   +W   V+P ++ +  I
Sbjct: 503 ERFGAFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---VSPLQVVVATI 559

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++   L + G +V  D   E+I  +     +   P+ ++ G K   + 
Sbjct: 560 TS---EADAYGLEVAEALREAGLNVETDFRNEKINYKVREHSVTKVPVIIVCGRKEAEER 616

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
            V I+   +  +  M L+  +   +
Sbjct: 617 TVNIRRLGSQDQVSMGLDAAVESLA 641


>gi|124267077|ref|YP_001021081.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
 gi|166225459|sp|A2SH07|SYT_METPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124259852|gb|ABM94846.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
          Length = 635

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 153/448 (34%), Gaps = 49/448 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      + +H+ G+  W P G      V   +R   
Sbjct: 229 QQYLHMLEE----AEKRDHRKLGRELDLFHLDEHAPGLVFWHPKGWTVWQQVEQYMRAVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW ++G +D Y + M  + +   +     P +      I++  
Sbjct: 285 RDNGYLEVKGPQILDQGLWEKTGHWDKYRENMF-VTESEKRDYALKPMNCPGHILIYKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  + +     R+E      G+MR R F   D + F  T E            
Sbjct: 344 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIF-CTEEHILPECVAYTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     S      A+    +   +        P +   + 
Sbjct: 403 LQKVYKDFGFNDIIYKVATRPEKRIGSDAVWDKAEHALMESLRASGCEFVVSPGDGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G +      +SLP  +
Sbjct: 463 PKIEYTL---------------------------KDALGRQWQCGTM---QVDFSLPERL 492

Query: 299 SATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +    G+    V +    +G++     ++   H G    W   +AP ++ ++NI   
Sbjct: 493 DAVYVAESGERLFPVMLHRAIVGSLERFIGILIEQHAGALPAW---LAPVQVMVLNITDG 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I   L K G     D   E+I  +     +   P  ++VG K  +   V 
Sbjct: 550 ---QADYAAEIAKTLQKQGVRAGVDLRNEKITYKIREHSMQKLPYILVVGDKEKAAGAVA 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       M L+      +   ++ 
Sbjct: 607 VRARGNQDLGVMPLDAFSQRMASDIAHK 634


>gi|320109353|ref|YP_004184943.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319927874|gb|ADV84949.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 676

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 153/451 (33%), Gaps = 46/451 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F  + +   RD  +   +L L +  I + +  G+  W P G      +   +R+E  R G
Sbjct: 264 FKHLEEIKARDHRVLGKQLDLFS--IQELAGSGLIFWHPNGAIIRKTMEDWMRDECLRRG 321

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG    YG+ M    + +D      P +      I+++  KSY
Sbjct: 322 YDLVVTPHVMRRELWQISGHEGFYGQNMYAPMELDDAEYRLKPMNCPGHILIYKNSPKSY 381

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++   +R E      G++R R F   DA+ F  TP   +            +
Sbjct: 382 RDLPVRYAELGNVYRYERSGTMHGLLRVRGFTQDDAHIF-CTPAQIEDEVVACVEFAEEV 440

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            H+ G     +   +                             +  +    T  +    
Sbjct: 441 LHKFGFNEFKVELST-------------WDPNDAKHYVGDPKDWELAVNGLKTALNRKNI 487

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MS 299
               +    A Y    DV    +                +G ++   T    ++LP    
Sbjct: 488 PYKEIPGEAAFYGPKIDVKLVDV----------------LGRLWQLSTVQFDFNLPRRFE 531

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DG+ H  V +     G++     V+   + G   +W   +AP +I L+ I    
Sbjct: 532 LEYTGEDGEKHQPVMVHRALFGSVERFFGVLIEHYAGAFPLW---LAPIQIGLVPI---S 585

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      E +   L  +G  V  D   E++ ++     L   P  +I+G K      V +
Sbjct: 586 EKHTAYAETVKKELEAIGLRVTLDARNEKMNAKIRDLTLQKVPFVLIMGDKEAEAKAVSV 645

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + R  G      L + +  A +        L
Sbjct: 646 RTRGKGDEGSTPLADFLARAKNLLETKAATL 676


>gi|312111641|ref|YP_003989957.1| prolyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311216742|gb|ADP75346.1| prolyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 567

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAVELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERNFALGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S 
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYSD 225



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 15/249 (6%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG   S    V+AD     +          +   N +    I +N   +   + YA
Sbjct: 332 SLGPIGVSES--VTVVADHAVKAIVNG-------VCGANEEGYHYIGVNPERDFTVSEYA 382

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   +  D  P+ K      RGIEVGH+F  GT+YS  ++AT+   +G+   + MG
Sbjct: 383 ---DLRFIQEGDPSPDGKGTIRFARGIEVGHVFKLGTRYSEALNATYLDENGRSQTMIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+VAA+ E   D  G++WP +VAPF + LI   A  +  R   ++ Y +L + 
Sbjct: 440 CYGIGVSRLVAAIAEQFADENGLVWPVAVAPFHVHLITANAKSEEQRQLADEWYEKLRQA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G +FA +DL+G P++V VG +   +  VE+K R TG   ++ + E+I
Sbjct: 500 GLEVLYDDRPERAGVKFADSDLIGIPVRVTVGKR-AGEGVVEVKVRQTGESVEVPVHELI 558

Query: 436 NYASHRFSN 444
           +        
Sbjct: 559 DTIQRLLQQ 567


>gi|190891876|ref|YP_001978418.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 652]
 gi|238692487|sp|B3PNV4|SYT_RHIE6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190697155|gb|ACE91240.1| threonyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 668

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 151/451 (33%), Gaps = 54/451 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + A +R     
Sbjct: 234 YLHML----AEAEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-A 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
               E++ P +    LW  SG +  Y + M  +            + +++     P +  
Sbjct: 289 ADYQEVNAPQVLDTSLWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F  T E   
Sbjct: 349 GHVQIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMA 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               K+    L ++   G K I ++  + P     S      A+   T V  +       
Sbjct: 408 AECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKT------- 460

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                    +  S   I         A      E         K    R  + G      
Sbjct: 461 --------IEAQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---Q 503

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +  ++  K   V +     G+M     ++  +  G   +W   V+P +
Sbjct: 504 VDFNLPERFGAFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---VSPLQ 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +          ++   L   G +V  D   E+I  +     +   P+ ++ G 
Sbjct: 561 VVVATITS---EADAYGLEVAEALRDAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGR 617

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           K   +  V I+   +  +  M L+  +   +
Sbjct: 618 KEAEERTVNIRRLGSQDQVSMGLDAAVESLT 648


>gi|114152266|sp|Q2LTR7|SYP_SYNAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 578

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 133/231 (57%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP  +E P DAE+ SH+LMLR GMI + S GIYS+LPLG + L  V  IIREE
Sbjct: 1   MRYSEMFLPTEREIPSDAEVVSHQLMLRAGMIRKLSAGIYSYLPLGYRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVYLPMVQPAELWQESGRWEHYGKELLRFRDRHDREYCLGPTHEEVITDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IK+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD   EG++ SY KMF +
Sbjct: 121 EIKTYRQLPKNLYQIQTKFRDEIRPRFGVMRGREFGMKDAYSFDADEEGAEISYQKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+  P+ A+SG IGG  SHEF+V+AD+GE  +          
Sbjct: 181 YKRIFARCGLRFRPVEADSGTIGGSFSHEFMVMADSGEDGLVFCATCSYAA 231



 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 102/181 (56%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +     ARGIEVGH+F  GTKYS  M A++   +GK+  + MG YGIG  R 
Sbjct: 390 ETDSCPRCQGALKFARGIEVGHVFKLGTKYSKAMGASYLDKNGKEQIMIMGCYGIGTGRT 449

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA IE +HD  GI+WP  ++P+++ +  +  +D+   +  E++Y  L+  G +V  DD 
Sbjct: 450 VAACIEQNHDENGIVWPMPISPYQVIITPVNMNDKALAETAERLYESLAGKGAEVLLDDR 509

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F  ADL+G P++V VG K +++ KVE++ R TG   D+ ++ V          
Sbjct: 510 DERAGVKFKDADLIGIPIRVTVGPKKLAEGKVEVRLRDTGETSDVQVDSVEKMILRVIEG 569

Query: 445 N 445
            
Sbjct: 570 K 570


>gi|307132338|ref|YP_003884354.1| prolyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306529867|gb|ADM99797.1| prolyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 572

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVFS 224



 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 113/204 (55%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  +
Sbjct: 366 DGKHYFGINWERDTALPQVADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQTLTMGCYGIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SFRVQEVAEGIYQQLRANGVDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            KHR  G +E +   +++ +   +
Sbjct: 546 YKHRRKGEKEMIKAGDIVEFLLSQ 569


>gi|289523104|ref|ZP_06439958.1| threonine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503647|gb|EFD24811.1| threonine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 624

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 152/439 (34%), Gaps = 41/439 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L + +  +   + G   + P G   L+ +    R+   + G
Sbjct: 218 YLAKVEEAKRRDHRRLGKELDIFS--MQSEAPGFPFFHPKGVVVLNVLVDFWRKVHVQRG 275

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   DLW+ SG +D Y + M    + + K     P +      +++S ++SY
Sbjct: 276 YQEIKTPLILDQDLWIRSGHWDHYRENMY-FTEIDGKPFAIKPMNCPGGILVYKSQLRSY 334

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P    ++ +  R E      G+MR R F   DA+ F  T +  K     +      I
Sbjct: 335 RDFPLKLAELGVVHRHERSGVLHGLMRVRCFTQDDAHIF-TTEDHIKEEIIDIMNIVKYI 393

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     +   + P            A+    +    +       P +   +   I 
Sbjct: 394 YGVFGFPY-HVELSTRPENAMGEKALWDRAEQALQEALDDQGVEYKLNPGDGAFYGPKID 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                         +    R  + G I     +       T+ G
Sbjct: 453 F---------------------------HLEDCIGRTWQCGTI-QLDFQMPEKFDITYIG 484

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +    +G++     ++   + G    W   +AP ++ ++ +         
Sbjct: 485 PDGEPHRPVMIHRTVLGSLERFLGILIEQYAGAFPYW---LAPVQVKILPV---SDEHLT 538

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + + + L K    V  D     +G +   A +   P  +I+G++ V +  V ++ R  
Sbjct: 539 YAKNVASLLQKQDVRVEVDRKEGTLGKKIRDAQMQKTPYMIIIGNREVENEVVSVRDRSK 598

Query: 424 GIREDMSLEEVINYASHRF 442
           G    MSLE +    S+ +
Sbjct: 599 GDLGSMSLEALKELLSNEY 617


>gi|312374940|gb|EFR22399.1| hypothetical protein AND_15306 [Anopheles darlingi]
          Length = 467

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 133/441 (30%), Positives = 218/441 (49%), Gaps = 33/441 (7%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           LML  G++ Q   G    LP+ Q+A+     +I        A  +++P L  A+LW +SG
Sbjct: 35  LMLEQGLMRQAGNGTLHVLPVLQRAVQKAIDLIDRHMQSVDAQRITLPVLTPAELWRQSG 94

Query: 85  RYDSYGK--EMLRLADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRD 141
           R +      E+L+  DR+ K  I GPTHEE +T +  +    SYR  P   YQI  KFRD
Sbjct: 95  RLNESDPPTELLQTKDRHGKMQILGPTHEESITALMAAIAPVSYRQFPLRLYQISTKFRD 154

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E++PRFG+MR++EFLMKD Y+FD+ P   + +Y  +  +Y R+F  +G+  + +  +SG 
Sbjct: 155 EMKPRFGLMRAKEFLMKDLYTFDVDPHRCRQTYETVNAAYGRLFSEIGVPFVKVAGDSGT 214

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +GG LSHE+   ++ GE ++                    +       ++ TA  ++   
Sbjct: 215 MGGSLSHEYHFPSEVGEDELLQCDQCGVRTNSEHLQKICALCDRCGAGKESTASTSSFER 274

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                             RGIEVGH F    +Y+ P+ A+    +GK   +QMG YGIG 
Sbjct: 275 Q-----------------RGIEVGHAFILEDRYTKPLGASCLQPNGKPTPLQMGCYGIGV 317

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKV--G 376
            R++AA +E     K + WP ++AP+++ ++  KA  +         +++Y  L     G
Sbjct: 318 TRLIAASLEVLSSEKELRWPLALAPYRVCIVTPKAGSKEESLVSPWVDRLYNLLHTAVPG 377

Query: 377 C--DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVS---DSKVEIKHRLTGIREDMS 430
           C  DV  DD  +  IG +   A  +G+PL V++G+K  +     + E+ +   G  +D+S
Sbjct: 378 CQGDVIVDDRNQLTIGKRVLDARRMGYPLIVVIGAKAANPAGSERFELHNLHAGTEQDLS 437

Query: 431 LEEVINYASHRFS--NNRPVL 449
             ++        S  ++RP +
Sbjct: 438 YTDLAAAIGDVLSTTHHRPAV 458


>gi|82524022|emb|CAI78700.1| Threonyl-tRNA synthetase [uncultured Flavobacteriaceae bacterium]
          Length = 644

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 161/445 (36%), Gaps = 41/445 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      +  +G+  WLP G    + +   +++ Q + G
Sbjct: 229 YLNLLEEAKKRDHRKLGKELELFA-FSKKVGQGLPLWLPKGAALRERLEDFLKKAQKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG +  +     + D+  +  P +     +I+ +   
Sbjct: 288 YEMVVTPHIGQKELYVTSGHYAKYGADSFQPIKTPKEDEEFLLKPMNCPHHCEIYNNSQW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F + PE     +  +    L
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCM-PEQLDQEFKNVIDLVL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG ++   +                       +     +  +    +      D 
Sbjct: 407 YVFGSLGFENFTAQVSVRD-------------PENPDKYIGEVENWEKAEQAIINAAKDK 453

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
                IVE   A Y    D   +              R  ++G I      Y+LP     
Sbjct: 454 GLDFVIVEGEAAFYGPKLDFMVKDALG----------RKWQLGTI---QVDYNLPERFDL 500

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+KG+D + H  V +     G++    A++     G   +W     P +  ++ I    +
Sbjct: 501 TYKGSDNELHRPVMIHRAPFGSIERFIAILLEHTAGNFPLWLM---PKQAIILCI---SE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 EK+   L         D+  E IG +   A++  +P  +I+G    S++K+ ++
Sbjct: 555 KYEKYAEKVLNLLENNEIRALVDNRNETIGKKIREAEMQKYPYMIIIGENEESENKISVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
                    +S+E          S 
Sbjct: 615 QHGGEDLGLISIETFSEVIKSEISK 639


>gi|257875532|ref|ZP_05655185.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257809698|gb|EEV38518.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 646

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 167/446 (37%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIRLREEAKERDHRKLGKELELFM-LSPEVGAGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P + + DL+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMANVDLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKEEFKRTLDLM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D      +   D M     +      D
Sbjct: 407 IGVYEDFNITDYRFRLSYR--------------DPQNKDKYFDDDAMWENAQTMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + S+I +    +
Sbjct: 503 YVGEDGENNHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQASIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   +I  RL   G  V  DD  E++G +   +     P Q++VG + V+D+ V I+
Sbjct: 558 AHSDYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKIPYQIVVGDQEVNDATVNIR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +   +   L   ++  +    N 
Sbjct: 618 RYGSKETQVEELNLFVDAMAAEVKNY 643


>gi|320536876|ref|ZP_08036869.1| threonyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320146259|gb|EFW37882.1| threonyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 583

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 161/452 (35%), Gaps = 54/452 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+    DAE   H+ + ++ G+ H  + + G   W P G      V   +RE+ 
Sbjct: 170 KEYLAMLE----DAEKRDHRKLGKSFGLFHLDEENPGQIFWHPNGWALYLLVQNYVREKI 225

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  
Sbjct: 226 KADGYLEVKTPFVMPQSLWERSGHWAKYRENMF-ITESEKRLFALKPMNCPGHIEIFKQG 284

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP    +     R+E      G++R R F+  DA+ F  T         K    
Sbjct: 285 IKSYRDLPLRLAEFGSCTRNEPSGSLHGILRVRGFVQDDAHIF-CTEAQISSEVKKFCAL 343

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              ++   G    SI ++  + P            A+                   E   
Sbjct: 344 LKNMYADFGFAEDSILVKFSTRPEKRVGDDATWDRAEKALADACKDAGLEYEVAEGEGAF 403

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +    I                               R  + G I      Y LP 
Sbjct: 404 YGPKLEFTLID---------------------------SLGREWQCGTI---QVDYQLPS 433

Query: 298 ---MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
              ++A + G D + H  V +    +G++     ++   + G     P  ++P +  +I 
Sbjct: 434 KERLNAEYIGEDNQKHNPVMLHRAALGSLERFIGILIEHYAGAF---PPWLSPLQAVVIP 490

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        D  EK    L+  G  V  D   +++ ++         P Q+IVG K  ++
Sbjct: 491 VAP---TFNDYAEKTAKDLAAQGLRVKADIDTDRMNAKIRKYQEQRIPYQLIVGEKEAAN 547

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + ++    G ++ M+ E  +N+   + + +
Sbjct: 548 GSLAVRIHH-GDQKTMTTEAFVNFIKEKIATH 578


>gi|89101224|ref|ZP_01174050.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084053|gb|EAR63228.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 408

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 172/435 (39%), Gaps = 34/435 (7%)

Query: 9   PILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            +L+E   RD      +L L      +  +G+  WLP G      V   I +++ R G  
Sbjct: 1   RLLEEAKERDHRKIGKELDLFM-TSQKVGQGLPMWLPKGATIRRIVERYIVDKEQRLGYE 59

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +  P + + +L+  SG +D Y ++M  + + +++ ++  P +      I+++ I SYR 
Sbjct: 60  HVYTPVMANVELYKTSGHWDHYQEDMFPVMEMDNEELVLRPMNCPHHMMIYKNSIHSYRE 119

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++    R E+     G+ R R   + DA+ F + P+  K  + ++    L ++ 
Sbjct: 120 LPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIF-VRPDQIKEEFKRVVHLILEVYK 178

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              ++    R                  D  +T+ + + D M     S   +  D + L+
Sbjct: 179 DFNIEDYSFRLSYR--------------DPQDTEKYFNDDEMWEKAQSMLKEAMDELGLD 224

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +     A      +  +  +L + + +S   ++    F    ++      ++ G D
Sbjct: 225 --YYEAEGEAAFYGPKLDVMVKTALGKEETLSTAQLD----FLLPERF----DLSYVGED 274

Query: 307 GKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           GK H   +   G+ + M    A +   + G    W   +AP ++ +I +        D  
Sbjct: 275 GKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTW---LAPVQVQVIPVSP--DAHFDYA 329

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L   G  V  D   E+IG +   A +   P  +++G K VSD+ V ++      
Sbjct: 330 KKVQEELQAQGYRVELDARNEKIGYKIREAQMQKIPYMLVLGDKEVSDNAVNVRKYGEQK 389

Query: 426 REDMSLEEVINYASH 440
            E MS +   +    
Sbjct: 390 SETMSFDVFKDALKE 404


>gi|120434969|ref|YP_860655.1| threonyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|117577119|emb|CAL65588.1| threonyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 667

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 160/441 (36%), Gaps = 46/441 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 255 AKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVSP 313

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + S +L+V SG Y  YG++  +        +  +  P +     +++ +   SYR+LP 
Sbjct: 314 HIGSKELYVTSGHYAKYGEDSFQPISTPNEGEEFMLKPMNCPHHCEMYNASSWSYRDLPK 373

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F + PE     + K+    L +F  LG
Sbjct: 374 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCM-PEQLDEEFKKVIDLTLYVFSSLG 432

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            +    +                  D    + +   D       S   +  D   LN +V
Sbjct: 433 FEDFTAQVSLR--------------DPDNKEKYIGSDDAWEKAESAIINAADEKGLNYVV 478

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKG 304
                          E    +    K        +G  +  GT    Y+LP     T+KG
Sbjct: 479 ---------------ETGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFDLTYKG 523

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +D + H  V +     G+M    A++     G   +W     P +  ++++    +    
Sbjct: 524 SDNESHRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLM---PEQAIILSL---SEKYEK 577

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L         D+  E IG +   A++  +P  +IVG +   D  + ++    
Sbjct: 578 YSQKVLTLLENNEIRALADNRNETIGKKIREAEVNKYPYMLIVGEQEAKDGTISVRKHSE 637

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G    M +E+  N  +    +
Sbjct: 638 GDLGTMKIEDFANLINTEIDS 658


>gi|315498771|ref|YP_004087575.1| threonyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315416783|gb|ADU13424.1| threonyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 640

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 157/444 (35%), Gaps = 48/444 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++  L+E    AE   H+ + R      + +  +G+  W P G      + A +R   
Sbjct: 231 QAYITRLEE----AEKRDHRKLGRQMNLFHMQEEGRGMVFWHPHGWTLWRTLEAYMRRRL 286

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G +E+  P +     W +SG +D Y   M        + +   P +      IF+  
Sbjct: 287 DAAGYVEVKTPQVLDRTFWEKSGHWDKYRPNMFVCETVEGETLSLKPMNCPGHVQIFKVG 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP    +     R E      G+MR R F   DA+ F    +       K    
Sbjct: 347 LRSYKELPIRMAEFGACHRYEPSGSLHGLMRVRGFTQDDAHIF-CREDQIVEETTKFITL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             ++   LG+++  +   + P     S EF                       +E    +
Sbjct: 406 CRQVHADLGMQAEHIALATRPEVRAGSDEFWD--------------------KAEAQMAE 445

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
              +            A  +   +  + D++        R    G I      Y LP  +
Sbjct: 446 AARAAGVEPVIAEGDGAFYAPKLDFIVRDAIG-------RTWTCGTI---QLDYVLPERL 495

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   DG +   V +    +G+      +I  ++ GK  +W   +AP ++ +  I + 
Sbjct: 496 GAEYVAEDGSRQRPVMLHRAILGSFERFIGIIIENYGGKFPLW---LAPIQVVVAPITSD 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++ ++L  VG  V  D   E+I  +     L   P+  +VG K     +V 
Sbjct: 553 ---ANDYAQQVASKLRSVGLRVDTDLRNEKINYKIREHSLAKVPVIAVVGRKEAETGEVA 609

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           +++     +  +S++         
Sbjct: 610 LRYLGQEGQTVLSVDSAAEQLRTE 633


>gi|254527233|ref|ZP_05139285.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538657|gb|EEE41110.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 638

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 155/447 (34%), Gaps = 44/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD      K  L    I + S G+  W P G      +   IRE   
Sbjct: 228 LNNYLKRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWTIYQVLEKYIREILK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +   +E+  P      LW +SG ++ +  +M   A  N +     P +      +F   +
Sbjct: 286 KNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTASEN-RTYAIKPMNCPCHIQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +      
Sbjct: 345 KSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIF-CTEEQIQEEVSTFIDLV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I ++  + P     S E    ++   T+   +K+      P E   +  
Sbjct: 404 FEVYKTFGFDEIIIKLSTRPEKKVGSEEIWDKSEEALTKALDNKNLKWELQPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I  +                            K    R  + G I      +S+P  + 
Sbjct: 464 KIEFSL---------------------------KDCLNRVWQCGTI---QVDFSMPVRLD 493

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D  K + V +    +G+      ++   ++ K  IW   +AP++I+L++I   +
Sbjct: 494 ATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIW---LAPYQITLLSITDRN 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               + C K    L   G     D   E+IG +   A L   PL  ++G K      V +
Sbjct: 551 ---IEKCLKFNELLINNGYRSTVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEIDSVSL 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +          +L  +           
Sbjct: 608 RALDGRDLGIFNLTNLCKLMDGLIEKR 634


>gi|24656200|ref|NP_647737.1| Prolyl-tRNA synthetase [Drosophila melanogaster]
 gi|7292265|gb|AAF47674.1| Prolyl-tRNA synthetase [Drosophila melanogaster]
          Length = 458

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 215/463 (46%), Gaps = 44/463 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +            
Sbjct: 182 YTLVNAAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSSCGFA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F  G K
Sbjct: 239 -----------------------GNSEVVKAPASCPSCNSSDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTTGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +   +A       L  VG      ++  DD  E  IG +   A  LG PL ++VG
Sbjct: 336 PKQGSKEQPEAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVG 395

Query: 408 SKF--VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +K   +   K+E+     G   ++   E +   +    + + +
Sbjct: 396 AKSARLDSPKLEVHT-SKGETYELDFSETLKLVAEHSQHKKSL 437


>gi|159043329|ref|YP_001532123.1| threonyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|189083606|sp|A8LQX9|SYT_DINSH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157911089|gb|ABV92522.1| threonyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 654

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 155/452 (34%), Gaps = 59/452 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G      +   +R  Q
Sbjct: 234 KKHLHMLEE----AAKRDHRKLGREMNLFHMQEEAPGQVFWHPNGWTVYTTLQDYMRRRQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G +E++ P +    LW  SG +D Y + M  +    + A         P +      
Sbjct: 290 RENGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEEHAREKAINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    
Sbjct: 350 VYNQGLKSYRDLPLRMAEFGACNRYEPSGALHGLMRVRGFTQDDAHIF-CTEDQIQDETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       I+  LG +S  ++  + P     S      A+        +        P E
Sbjct: 409 RFIRMLSTIYRDLGFESFDIKFSTRPEVRAGSDAVWDKAEAALEAAIRTVTDDFELDPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--- 292
              +   +                                        +G  +  GT   
Sbjct: 469 GAFYGPKLDFKLTDA---------------------------------IGREWQLGTFQA 495

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            + LP  + AT+ G DG K   V +    +G+      ++  +  GK   W   +AP ++
Sbjct: 496 DFVLPERLDATYIGEDGAKHRPVMLHRAILGSFERFLGILIENFAGKLPFW---LAPRQV 552

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + +I +      D   ++ A L++ G     D   E+I  +     +   P+ + VG +
Sbjct: 553 VVASIIS---EADDYVREVVAALTRAGIRAEADIRNEKINYKVREHSVGKVPVILAVGRR 609

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + +  V ++         + L+ ++   +  
Sbjct: 610 EMEERTVTLRRLGEKQTSVVGLDALVADLAAE 641


>gi|294619108|ref|ZP_06698603.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291594769|gb|EFF26151.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 646

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 165/450 (36%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 224 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 282 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + + 
Sbjct: 342 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRT 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + ++    +     R                  D   T  +   D M     +   
Sbjct: 401 LELMVAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLK 446

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D + L+    +     A      + ++  +L   + +S   ++    F    ++   
Sbjct: 447 AAMDELELD--YFEAEGEAAFYGPKLDVQVKTALGTEETLSTIQLD----FLLPERF--- 497

Query: 298 MSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I + 
Sbjct: 498 -DLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVS 553

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ 
Sbjct: 554 V--DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDAT 611

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++   +       L   I+       N 
Sbjct: 612 VNVRRYGSKETAVEDLNIFIDAMEAEVKNY 641


>gi|332300493|ref|YP_004442414.1| threonyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177556|gb|AEE13246.1| threonyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 650

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 165/450 (36%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      +L L      +  +G+  WLP G +    +   ++  
Sbjct: 229 KLLDEYLALLEEAKKRDHRKIGKELELFA-FSQRVGQGLPLWLPRGTQLRLKLEDFLKRI 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  ++  P + + +L+  SG Y  YG +  ++    +  +A +  P +     +I+
Sbjct: 288 QKRYGYQQVMTPHIGNVELYKTSGHYAKYGADSFQVITTPQEGEAFMLKPMNCPHHCEIY 347

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           R    SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+
Sbjct: 348 RLKPHSYRDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFLKV 406

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 IF  L  ++   +                 + T  ++   S++  D    +   
Sbjct: 407 MDIIFIIFRALDFENFEAQISLR-------------SQTDRSKYIGSEENWDRAEQAIIE 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +      +     A Y    D   +              R  ++G I      Y+LP
Sbjct: 454 ACQEAGLPAHVEYDEAAFYGPKLDFMVKDALG----------RRWQLGTI---QVDYNLP 500

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G D + H  V +     G+M    AV+     GK  +W   +AP ++ ++ +
Sbjct: 501 ERFDLEYTGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LAPDQVVILPV 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   +   ++   LS+    V  DD  E++G +    +L   P  +IVG +  +D 
Sbjct: 558 ---SERFNEYANEVAVALSEHDISVSIDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADG 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ +  G      +            +
Sbjct: 615 TVSVRKQGEGDVGTEKISTFAERILQEIES 644


>gi|293556705|ref|ZP_06675269.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601167|gb|EFF31455.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 646

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 165/450 (36%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + + 
Sbjct: 343 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + ++    +     R                  D   T  +   D M     +   
Sbjct: 402 LELMVAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLK 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D + L+    +     A      + ++  +L   + +S   ++    F    ++   
Sbjct: 448 AAMDELELD--YFEAEGEAAFYGPKLDVQVKTALGTEETLSTIQLD----FLLPERF--- 498

Query: 298 MSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I + 
Sbjct: 499 -DLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVS 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ 
Sbjct: 555 V--DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDAT 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++   +       L   I+       N 
Sbjct: 613 VNVRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|257865905|ref|ZP_05645558.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257872238|ref|ZP_05651891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257799839|gb|EEV28891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257806402|gb|EEV35224.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 646

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 167/446 (37%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 229 KEFIRLREEAKERDHRKLGKELELFM-LSPEVGAGLPFWLPKGATIRRTIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P + + DL+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 288 LGYQHVYTPIMANVDLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 348 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKEEFKRTLDLM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D      +   D M     +      D
Sbjct: 407 IGVYEDFNITDYRFRLSYR--------------DPQNKDKYFDDDAMWENAQTMLKAAMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 453 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 502

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + S+I +    +
Sbjct: 503 YVGEDGENNHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQASIIPVSV--E 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   +I  RL   G  V  DD  E++G +   +     P Q++VG + V+D+ V I+
Sbjct: 558 AHSDYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKIPYQIVVGDQEVNDATVNIR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +   +   L   ++  +    N 
Sbjct: 618 RYGSKETQVEELNLFVDAMAAEVKNY 643


>gi|225013012|ref|ZP_03703428.1| threonyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225002828|gb|EEG40808.1| threonyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 648

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 167/451 (37%), Gaps = 41/451 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   +L +++E   RD      +L L T    +  +G+  WLP G    + +   ++  
Sbjct: 226 KQLTEYLELVEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKAA 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           QN+ G  ++  P + S +L++ SG Y+ YG +  +        +  +  P +     +I+
Sbjct: 285 QNKAGYEQVISPHIGSKELYMTSGHYEKYGADSFQPIQTPAEGEEFLLKPMNCPHHCEIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +   SYR+LP  + +    +R E      G+ R R F   DA+ F + P      + K+
Sbjct: 345 NAKPWSYRDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCM-PSQLDDEFKKV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +F  LG ++   +                       +   S    +    +   
Sbjct: 404 IDLVLYVFGSLGFENFTAQVSLRD-------------PEKPEKYIGSTHNWELAEQAIIN 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +      I     A Y    D   +              R  ++G I      Y+LP
Sbjct: 451 AAKEKNLDYVIETGEAAFYGPKLDFMVKDALG----------RKWQLGTI---QVDYNLP 497

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +KG+D + H  V +     G++    A++     G   +W   + P +++++ +
Sbjct: 498 ERFDLNYKGSDNELHRPVMIHRAPFGSLERFVAILLEHTGGNFPLW---LMPNQVNILCV 554

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               + C++   K+   L         DD  E IG +   +++   P  +I+G K   + 
Sbjct: 555 ---SEKCKNYALKVSNFLENHEIRALLDDRNETIGKKIRESEISKVPYMIIIGEKEEENQ 611

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++    G     S E V+   +    ++
Sbjct: 612 TVSLRKHSEGDLGSFSTESVVELINTEIKSS 642


>gi|312886253|ref|ZP_07745867.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301278|gb|EFQ78333.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mucilaginibacter
           paludis DSM 18603]
          Length = 641

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 166/450 (36%), Gaps = 43/450 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L      +   G+  WLP G    + +   ++
Sbjct: 224 KASELTDYLHLIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGTALRERLVNFLQ 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTD 116
           + Q + G  ++  P +   +L+V SG Y+ YG +  +     +  +     P +     +
Sbjct: 283 KAQVKAGYEQVITPHIGHKNLYVTSGHYEKYGADSFQPIKTPQEGEEFFLKPMNCPHHCE 342

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+++  +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + 
Sbjct: 343 IYKTKPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQVKEEFK 401

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L +F+ LG K    +                  D      +   D       + 
Sbjct: 402 KVIDLVLYVFNALGFKDYTAQVSLR--------------DPENKAKYIGTDENWAIAEAA 447

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             +  +   L ++     A +                  K    R  ++G I      Y+
Sbjct: 448 IIESAEEKGLPTVHVTGEAAFYGPKLDF---------MVKDALGRKWQLGTI---QVDYN 495

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + G+D + H  V +     G+M    AV+     G   +W   ++P +  ++
Sbjct: 496 LPERFELEYTGSDNQKHRPVMIHRAPFGSMERFIAVLIEHCAGNFPLW---LSPEQFIVL 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +   +  +K+   L         D   E+IG +   A++   P  +IVG K  +
Sbjct: 553 PI---SEKYEEYAKKLSDLLKDSDICGLIDFRDEKIGRKIRDAEVKKIPYMLIVGEKEEA 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  V ++    G    MS+EE         
Sbjct: 610 EGMVSVRKHGEGDLGSMSIEEFTQKIKKEI 639


>gi|315646839|ref|ZP_07899954.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315277769|gb|EFU41093.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 635

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 153/435 (35%), Gaps = 41/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   M    + G+  +LP G    + +    RE Q   G  E+  P
Sbjct: 239 AKKRDHRKLGKELGLF--MFSDDAPGMPFFLPKGTIIRNELEQFARELQFHRGYDEVRTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +D Y   M   +  +++  +  P +      ++++ + SYR LP   
Sbjct: 297 LMMNKRLWEMSGHWDHYKDNMY-FSKVDEQEYVMKPMNCPGHMLVYQNSLHSYRELPIRL 355

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F + P+       ++     +++   G  
Sbjct: 356 SEFGQVHRHEYSGALSGMMRVRTFCQDDAHIF-VRPDQIHDEIGQVIDFISQVYRVFGFD 414

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A++   +V   +         +   +   I  + +   
Sbjct: 415 Y-TIELSTRPEDSMGSDELWEQAESSLQEVLDQQKLPYRINEGDGAFYGPKIDFHILDS- 472

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                                       R  + G I     ++      ++   D + H 
Sbjct: 473 --------------------------LKRSWQCGTI-QLDFQFPEKFDLSYIAEDNQKHR 505

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++   + G   +W   +AP  + LI +  H     D   K+  
Sbjct: 506 PVVIHRAVFGSIERFIGILTEHYGGAFPLW---LAPVHVMLIPVSDH---YIDFSLKVKK 559

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL   G  V  D   E++G +   A LL  P   ++G K ++   V ++ R  G   + +
Sbjct: 560 RLEHAGVRVEVDIRNEKLGYKIREAGLLKTPYTFVLGEKEMNSDLVAVRKRGEGELGESA 619

Query: 431 LEEVINYASHRFSNN 445
           ++++I        + 
Sbjct: 620 IDDMIARLRKEIESR 634


>gi|212691282|ref|ZP_03299410.1| hypothetical protein BACDOR_00773 [Bacteroides dorei DSM 17855]
 gi|237712289|ref|ZP_04542770.1| threonyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237726428|ref|ZP_04556909.1| threonyl-tRNA synthetase [Bacteroides sp. D4]
 gi|212666514|gb|EEB27086.1| hypothetical protein BACDOR_00773 [Bacteroides dorei DSM 17855]
 gi|229434954|gb|EEO45031.1| threonyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453610|gb|EEO59331.1| threonyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
          Length = 646

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 164/460 (35%), Gaps = 61/460 (13%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 226 KMLDEYLVMLEEAKKRDHRKIGKEMDLFM-FTDMVGKGLPMWLPKGTALRIRLQDFLRRI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + + +L++ SG Y  YGK+  +        +     P +      I+
Sbjct: 285 QARYDYQEVMCPPIGNKNLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 345 KNSPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHLF-CRPDQVKEEFLRV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +F  +  +++  +            IG D + E        E  +  +      
Sbjct: 404 MDIINIVFKSMNFENVEAQISLRDKVNREKYIGSDENWE------KAEQAIIEA------ 451

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                                             E    +    K        +G  +  
Sbjct: 452 ------------------------CEEKGLTAKVEYGEAAFYGPKLDFMVKDAIGRRWQL 487

Query: 291 GT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GT    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   +
Sbjct: 488 GTIQVDYNLPERFQLEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---L 544

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P +++++ I    +   +  EK+ A L K       DD  E+IG +    ++   P  +
Sbjct: 545 TPDQVAILPI---SEKFNEYAEKVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYML 601

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IVG K   + +V ++ +  G +  M +EE     +   SN
Sbjct: 602 IVGEKEAENGEVAVRKQGEGDKGTMKIEEFGKNIAEEVSN 641


>gi|320540052|ref|ZP_08039708.1| prolyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320029901|gb|EFW11924.1| prolyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 570

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+ENP DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKENPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFG+MRSREFLMKDAYSF  + +  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGIMRSREFLMKDAYSFHTSQDSLQVTYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YNKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/200 (37%), Positives = 115/200 (57%), Gaps = 3/200 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGA 305
           I  Q   P    +D+ N    D+ P+ +      RGIEVGHIF  GTKYS  M AT +G 
Sbjct: 371 INWQRDLPLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGE 430

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +  
Sbjct: 431 DGRNQVLTMGCYGIGVTRVVAAAIEQNHDERGIIWPDTIAPFQVAILPMNMHKSFRVQAL 490

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G
Sbjct: 491 AEDLYTTLRSHGIDVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRIG 550

Query: 425 IREDMSLEEVINYASHRFSN 444
            ++ +  EE++N+   +  +
Sbjct: 551 EKQMIKTEEIVNFLLRQIKH 570


>gi|260557205|ref|ZP_05829421.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260409311|gb|EEX02613.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 571

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFS 224



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G D+  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGFDLLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|120602767|ref|YP_967167.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|152112308|sp|A1VE74|SYP_DESVV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120562996|gb|ABM28740.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 574

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+++P+G +AL+ V AI+REE
Sbjct: 1   MRWSRCYIPTLKEAPSDAEVVSHKLLVRAGMIRKLTSGIYTFMPMGLRALNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVLMPMVQPADLWQETGRWEFYGKELLRFRDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDQAGCDESYKAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+   + A+SG IGG  SHEF+VLADTGE  +          
Sbjct: 181 YQRIFSRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTLAVCTACEYAA 231



 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 269 DSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         +GIEVGH+F  G KYS  M+ATF   +GK+  + MG YGIG  RVVA
Sbjct: 390 DPCPRCGGAVELPKGIEVGHVFKLGLKYSKSMNATFLDENGKEQVMVMGCYGIGVSRVVA 449

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + IE ++DG GI++P  +AP++++L+ +   ++       +I + L   G DV  DD  E
Sbjct: 450 SCIEQNNDGDGIVFPPPIAPYEVALLLLDPKNEEAAAKAAEIESFLEAEGHDVLLDDRDE 509

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + G +F  ADL+G P Q+++G K ++   VE K+R +G + ++ +E    
Sbjct: 510 RPGVKFKDADLIGSPYQLVLGGKGLARGVVEAKNRRSGEKTELPVEGFAE 559


>gi|94495624|ref|ZP_01302204.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94425012|gb|EAT10033.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 665

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 152/455 (33%), Gaps = 48/455 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +++   + +   RD      ++ L    + Q + G   W P G     N+ A +R   
Sbjct: 237 QLAEHLTRLEEAGKRDHRKLGAEMDLF--HLQQEAHGSVFWHPKGYVIWRNLEAYMRRAI 294

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGP 108
           +  G  E+  P +  A  W +SG +  Y + M  + D              +   M   P
Sbjct: 295 DDAGYREVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNVEDEGPLVSDDADWMALKP 354

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      IFR  IKSYR+LP  FY+     R+E      G+MR R+F   DA+ F    
Sbjct: 355 MNCPAHVLIFRQGIKSYRDLPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CRE 413

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +              RI+   G     ++    P     + E   + D  E ++  +   
Sbjct: 414 DQIVEEVRAFCALADRIYKDFGFTY-SIKLALRPEKRFGTEE---MWDKAEEELRNAVAA 469

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                P    +           +                             R  +VG I
Sbjct: 470 AGLNTPDYGWEELPGEGAFYAPKLEWHLTD-------------------AIGRTWQVGTI 510

Query: 288 FYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                     + A++ G DG+ H  V +     G+      ++   + GK  +W   +AP
Sbjct: 511 -QSDRVLPERLDASYIGEDGERHRPVMLHRAIFGSYERFIGILIEHYAGKFPLW---LAP 566

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +  +  I +      D  +    RL   G     D   E+I  +     L   P  ++V
Sbjct: 567 VQAVVATIVSD---ADDYAKATVDRLRAAGIRAELDTRNEKINYKVREHSLAKVPNLLVV 623

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G +   +  V ++      +  +SL++VI      
Sbjct: 624 GRREADEGTVALRELGKDGQSVLSLDDVIARLEKE 658


>gi|184159387|ref|YP_001847726.1| prolyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|239501767|ref|ZP_04661077.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|332876227|ref|ZP_08444002.1| proline--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|226695842|sp|B2HY33|SYP_ACIBC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731481|sp|A3M8I1|SYP_ACIBT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183210981|gb|ACC58379.1| Prolyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|193078264|gb|ABO13225.2| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|322509299|gb|ADX04753.1| proS [Acinetobacter baumannii 1656-2]
 gi|323519326|gb|ADX93707.1| prolyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735499|gb|EGJ66551.1| proline--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 571

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFS 224



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|149200873|ref|ZP_01877848.1| threonyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149145206|gb|EDM33232.1| threonyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 648

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 153/447 (34%), Gaps = 49/447 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    A+   H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 KDYLNFLEE----ADRRDHRKLGREMDLFHMQEEAPGQVFWHPNGWTVYTTLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG ++ Y + M  +    D A         P +      
Sbjct: 290 RRGGYVEVNTPQVVDRKLWERSGHWEKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF-CTEDQIESETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       I+  LG  +  +   + P     S E    A+        +        P E
Sbjct: 409 RFITFLSGIYTDLGFPNFEVLFSTRPDVRAGSDEVWDKAEAALLSATRAAGIEPKVNPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++    +     ++    F    +  
Sbjct: 469 GAFYGPKLEFTLT--------------------DAIGRKWQCGTHQVD----FVLPER-- 502

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G DG K   V +    +G+      ++   H G+   W   +AP ++ + +I
Sbjct: 503 --LDANYIGTDGAKHRPVMLHRAVLGSFERFIGILIEEHAGRLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   K+   L+ +      D   E+I  +     L   P+ +  G + V D 
Sbjct: 558 VS---EADDYVTKVAQNLTDLNIRAEADTRNEKINYKVREHSLGKVPVILACGPREVEDG 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++         + L++V    +  
Sbjct: 615 TVSLRRLGEKDSRIVPLDQVAAELARE 641


>gi|228469293|ref|ZP_04054319.1| threonyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228309192|gb|EEK17794.1| threonyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 650

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 166/450 (36%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      +L L      +  +G+  WLP G +    +   ++  
Sbjct: 229 KLLDEYLALLEEAKKRDHRKIGKELELFA-FSQRVGQGLPLWLPRGTQLRLKLEDFLKRI 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  ++  P + + +L+  SG Y  YG +  ++    +  +A +  P +     +I+
Sbjct: 288 QKRYGYQQVMTPHIGNVELYKTSGHYAKYGADSFQVITTPQEGEAFMLKPMNCPHHCEIY 347

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+
Sbjct: 348 KLKPHSYRDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFLKV 406

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 IF  L  ++   +                 + T  ++   S++  D    +   
Sbjct: 407 MEIIFIIFRALDFENFEAQISLR-------------SQTDRSKYIGSEENWDRAEQAIIE 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +      +     A Y    D   +              R  ++G I      Y+LP
Sbjct: 454 ACQEAGLPAHVEYDEAAFYGPKLDFMVKDALG----------RRWQLGTI---QVDYNLP 500

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G D + H  V +     G+M    AV+     GK  +W   ++P ++ ++ +
Sbjct: 501 ERFELEYTGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LSPDQVVILPV 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D   ++ A LS+    V  DD  E++G +    +L   P  +IVG +  +D 
Sbjct: 558 ---SERFNDYAYEVAAALSEQDISVSVDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADG 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ +  G      +            +
Sbjct: 615 TVSVRKQGEGDAGTEKISTFAERILKEIES 644


>gi|195125579|ref|XP_002007255.1| GI12837 [Drosophila mojavensis]
 gi|193918864|gb|EDW17731.1| GI12837 [Drosophila mojavensis]
          Length = 460

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 216/464 (46%), Gaps = 42/464 (9%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+ALD   
Sbjct: 3   KASRLFCPALI-IPKNAVVKQTEQLSVSQKLLTELGLVKSGSNGTYQIMPIAQRALDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQRNMQEAGGQKISLPVLTPTQLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAI 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTAPISYRQLPLLLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSKEKAELT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R F +L +  + + A +G +GG LSHE+  ++  GE  +            
Sbjct: 182 YATVSEAYERFFRQLEVPFVKVEAATGIMGGSLSHEYHYISPVGEDTLLNCSSCGYA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                  A            +    +    RG+EV H F  G K
Sbjct: 239 ---------------------GNAEVFGEDATSTCPNCQSTQLNRVRGVEVAHTFLLGDK 277

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ AT+    GK   + MG YGIG  R++AA +E       + WP  +AP+ + LI 
Sbjct: 278 YSKPLGATYLNTSGKPETLVMGCYGIGITRIIAAALEVLSTEHELRWPTLLAPYDVCLIG 337

Query: 354 IKAHDQVCRD---ACEKIYARLSKV-GCDVFW-DDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +           +  +L++V G +    DD  E  IG +   A  LG PL V+VG
Sbjct: 338 PKQGSKEQVSGERIESDLLQQLTQVCGAEQLLHDDRKELTIGKRLMEAKRLGHPLTVVVG 397

Query: 408 SKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K       K+E+         ++++ EV+   +    + + +L
Sbjct: 398 AKATQGEAPKLELHA-SGAETVELNITEVLERVASHVRHKQQLL 440


>gi|46579756|ref|YP_010564.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|81830448|sp|Q72CD8|SYP_DESVH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46449171|gb|AAS95823.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233547|gb|ADP86401.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 574

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+++P+G +AL+ V AI+REE
Sbjct: 1   MRWSRCYIPTLKEAPSDAEVVSHKLLVRAGMIRKLTSGIYTFMPMGLRALNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVLMPMVQPADLWQETGRWEFYGKELLRFRDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDQSGCDESYKAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+   + A+SG IGG  SHEF+VLADTGE  +          
Sbjct: 181 YQRIFSRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTLAVCTACEYAA 231



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 269 DSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         +GIEVGH+F  G KYS  M+ATF   +GK+  + MG YGIG  RVVA
Sbjct: 390 DPCPRCGGAVELPKGIEVGHVFKLGLKYSKSMNATFLDENGKEQVMVMGCYGIGVSRVVA 449

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + IE ++DG GI++P  +AP++++L+ +   ++       +I + L   G DV  DD  E
Sbjct: 450 SCIEQNNDGDGIVFPPPIAPYEVALLLLDPKNEEAAAKAAEIESFLEAEGHDVLLDDRDE 509

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + G +F  ADL+G P Q+++G K ++   VE K+R +G + ++ +E    
Sbjct: 510 RPGVKFKDADLIGSPYQLVLGGKGLARGVVEAKNRRSGEKTELPVEGFAE 559


>gi|227537393|ref|ZP_03967442.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242771|gb|EEI92786.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 641

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 158/453 (34%), Gaps = 54/453 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD      +L L      +   G+  WLP G      +   ++  Q 
Sbjct: 228 LTDYLKFIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGAALRQKLIDFMQRAQL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P +    L+V SG Y+ YG++  +        +     P +     +I+++
Sbjct: 287 KAGYEPVVTPHIGHKQLYVTSGHYEKYGEDSFQPIKTPVEGEEFFLKPMNCPHHCEIYKT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAE-------SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
             L +F  LG +    +         +  IG   S E  VLA+    +    K       
Sbjct: 406 LVLYVFGALGFEDYIAQVSLRDPENRTKYIG---SDENWVLAERAIIEAADEKGLPTVVE 462

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E   +   +                               K    R  ++G I     
Sbjct: 463 YGEAAFYGPKLDF---------------------------MVKDALGRKWQLGTI---QV 492

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            Y+LP      + G+D  K   V +     G++    AV+     G+  +W   +AP + 
Sbjct: 493 DYNLPERFELEYTGSDNAKHRPVMIHRAPFGSLERFIAVLIEHCAGRFPLW---LAPEQF 549

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ +    +   +  +K+   L+        D   E++G +   A++   P  +IVG K
Sbjct: 550 IVLPV---SEKYEEYAQKLLESLNNSDIRGLIDLRDEKVGRKIRDAEVKKLPYMLIVGEK 606

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                 V ++   +G    M+ EE         
Sbjct: 607 EAESGTVSVRKHGSGDVGSMTPEEFREVLIKEI 639


>gi|283850295|ref|ZP_06367584.1| prolyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283574321|gb|EFC22292.1| prolyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 575

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/229 (55%), Positives = 167/229 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E+P +AE+ SHKL+LR GMI + + GIY++LPLG +A++NV  I+REE
Sbjct: 1   MRLSRYYAPTLKESPAEAEVISHKLLLRAGMIRKLTAGIYTYLPLGLRAVNNVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR+D YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWDFYGRELLRFVDRHDRESCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  MF +
Sbjct: 121 EIRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDAGADASYKSMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y RIF RLGLK   + A+SG IGG  SHEF+VLA+TGE  +        
Sbjct: 181 YARIFTRLGLKFRAVSADSGAIGGSFSHEFMVLAETGEDTIVACPACDY 229



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 D+ P+        +GIEVGH+F  G KYS  +SATF    GK+ ++ MG YGIG
Sbjct: 384 RQVAPGDTCPKCGAALDFTKGIEVGHVFKLGLKYSKALSATFLDEAGKEQFMIMGCYGIG 443

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+VAA IE ++D  GI++P  +APF+ +LIN+   D+      ++IYA L+K G +  
Sbjct: 444 VSRIVAACIEQNNDASGIVFPPPIAPFEAALINLSPKDETASAKADEIYAALTKAGVETL 503

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DD  E+ G +F  ADL+G P+Q+ +G K ++   VE K R TG + ++ LE  + 
Sbjct: 504 LDDRDERPGVKFKDADLIGLPIQLTLGGKGLARGIVETKDRRTGEKGELPLEGFLE 559


>gi|69245748|ref|ZP_00603614.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257880251|ref|ZP_05659904.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257883051|ref|ZP_05662704.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257891365|ref|ZP_05671018.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257893638|ref|ZP_05673291.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258614441|ref|ZP_05712211.1| threonyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560451|ref|ZP_05832625.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293563269|ref|ZP_06677719.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294621403|ref|ZP_06700575.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939207|ref|ZP_07846461.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942550|ref|ZP_07849386.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948402|ref|ZP_07851791.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951256|ref|ZP_07854311.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314991679|ref|ZP_07857149.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314996805|ref|ZP_07861818.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195641|gb|EAN10081.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257814479|gb|EEV43237.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818709|gb|EEV46037.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257827725|gb|EEV54351.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257830017|gb|EEV56624.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260073453|gb|EEW61781.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291599050|gb|EFF30095.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291604721|gb|EFF34205.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313589100|gb|EFR67945.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593770|gb|EFR72615.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596608|gb|EFR75453.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313598686|gb|EFR77531.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313641458|gb|EFS06038.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645194|gb|EFS09774.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 646

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 165/450 (36%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + + 
Sbjct: 343 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + ++    +     R                  D   T  +   D M     +   
Sbjct: 402 LELMVAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLK 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D + L+    +     A      + ++  +L   + +S   ++    F    ++   
Sbjct: 448 AAMDELELD--YFEAEGEAAFYGPKLDVQVKTALGTEETLSTIQLD----FLLPERF--- 498

Query: 298 MSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I + 
Sbjct: 499 -DLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVS 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ 
Sbjct: 555 V--DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDAT 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++   +       L   I+       N 
Sbjct: 613 VNVRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|288940948|ref|YP_003443188.1| prolyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896320|gb|ADC62156.1| prolyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 572

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  ++E P DAEIASH+LMLR G+I + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRTSEFPLQTIKETPADAEIASHRLMLRAGLIRKLAAGLYTWLPLGLRVLRRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+S+P +Q A+LW ESGR++ YG E+LR  DR+ +   +GPTHEE++T++ R+
Sbjct: 61  MDRAGALEVSMPAVQPAELWQESGRWEQYGPELLRFKDRHQREFCFGPTHEEIITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L       +Y +M  +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDASLAETYQRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL   P+ A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCRIFTRCGLDFRPVSADTGSIGGSASHEFHVLASSGEDAIAFS 224



 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 108/207 (52%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D      +      P    +D+ N    D  P+ +     ARGIEVGHIF  G KYS  
Sbjct: 365 QDGKHWFGLNWGRDLPLPEVADLRNVVEGDPSPDGQGTLTIARGIEVGHIFQLGRKYSEA 424

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M AT  G DGK   + MG YGIG  RVVAA IE  HD +GI WP  +APF+++L+ +K  
Sbjct: 425 MKATVLGEDGKATVMTMGCYGIGVSRVVAAAIEQHHDERGICWPAPIAPFEVALLPMKLG 484

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+A EK+YA L   G DV  DD   + G  FA  +L+G P +++VG K + D +V
Sbjct: 485 KSYRVREATEKLYAELQAAGIDVLLDDRDARPGFMFADMELIGIPHRIVVGDKGLDDGQV 544

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + ++ ++ +   R  
Sbjct: 545 EYKGRADAEMQLIPIDTIVEFVRERLR 571


>gi|261208968|ref|ZP_05923373.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289565220|ref|ZP_06445672.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294615018|ref|ZP_06694907.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|260077007|gb|EEW64729.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289163041|gb|EFD10889.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592149|gb|EFF23769.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 647

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 165/450 (36%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + + 
Sbjct: 343 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + ++    +     R                  D   T  +   D M     +   
Sbjct: 402 LELMVAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLK 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D + L+    +     A      + ++  +L   + +S   ++    F    ++   
Sbjct: 448 AAMDELELD--YFEAEGEAAFYGPKLDVQVKTALGTEETLSTIQLD----FLLPERF--- 498

Query: 298 MSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I + 
Sbjct: 499 -DLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVS 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ 
Sbjct: 555 V--DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDAT 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++   +       L   I+       N 
Sbjct: 613 VNVRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|169794838|ref|YP_001712631.1| prolyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|213157835|ref|YP_002320633.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|215482385|ref|YP_002324567.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|301345755|ref|ZP_07226496.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301511535|ref|ZP_07236772.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|301594855|ref|ZP_07239863.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|332852292|ref|ZP_08434097.1| proline--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332870515|ref|ZP_08439279.1| proline--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|226695840|sp|B7GWV6|SYP_ACIB3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226695841|sp|B7I854|SYP_ACIB5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731418|sp|B0V4Y6|SYP_ACIBY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169147765|emb|CAM85628.1| prolyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|213056995|gb|ACJ41897.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|213986493|gb|ACJ56792.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|332729422|gb|EGJ60762.1| proline--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332732252|gb|EGJ63520.1| proline--tRNA ligase [Acinetobacter baumannii 6013113]
          Length = 571

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFS 224



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|56459994|ref|YP_155275.1| prolyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81821672|sp|Q5QW31|SYP_IDILO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56179004|gb|AAV81726.1| Prolyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 567

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 158/235 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAEI SH+LMLR GMI + + G+Y+W P G + L  V  ++REE
Sbjct: 1   MRSSKYLLSTLKETPSDAEIVSHQLMLRAGMIRKVAAGLYTWTPTGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P +Q ADLW ESGR+D YG E+LR+ DRN +  + GPTHEE+++ + R 
Sbjct: 61  MEAINALEILMPMVQPADLWQESGRWDDYGPELLRIKDRNQRDFLLGPTHEEIISQLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDESLQKTYDDMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA +GE  +  S           
Sbjct: 181 YCRIFERLGLDYRPVIADTGSIGGSHSHEFHVLASSGEDAIAFSDSSDYAANVEM 235



 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 102/174 (58%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              + K   ARGIEVGHIF  G KYS  M        GK   + MG YGIG  R+VAA I
Sbjct: 394 PCGQGKVKIARGIEVGHIFQLGKKYSDAMKVGVLSESGKHETLTMGCYGIGVSRIVAAAI 453

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E ++D +GI WP+++APF++ ++ +  H     ++A EK+Y  L   G DV +DD  E+ 
Sbjct: 454 EQNNDERGICWPEALAPFQVVIVPMNMHKSARVQEAAEKLYTDLKAQGIDVLFDDRKERP 513

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G  F   +L+G P QV+VG + + +++VE + R  G ++ ++L++ I++   + 
Sbjct: 514 GVMFTDMELIGIPHQVVVGERNLDENQVEYQSRKGGEKQKINLDDCISFIQQQL 567


>gi|313902061|ref|ZP_07835474.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467670|gb|EFR63171.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 638

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 161/446 (36%), Gaps = 41/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L      + + G   W P G      +    RE Q 
Sbjct: 228 LEEHLQRLEEARRRDHRKLGPELDLF--HFEEVAPGYAFWHPKGATVYGLLEQFSRELQA 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P +   DLW  SG ++ Y   M  L +R D      P +      ++RS I
Sbjct: 286 RYGYQEVRTPEILKVDLWHRSGHWEHYRDNMF-LIEREDALFGVKPMNCPGHCLLYRSRI 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R E      G++R R F   DA+ F +  +  +    ++    
Sbjct: 345 RSYRDLPLRLAEYGRLARFERSGTLHGLLRVRGFEQDDAHLF-VREDQIEEEIGRVLELV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G+    ++  + P                  + F     +     +      +
Sbjct: 404 DTIYGTFGMPY-EIKLATRP------------------EKFMGDPALWERAEAALARALE 444

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +  +       A      +  + DSL    + +   ++    F    ++      T
Sbjct: 445 AAGRDYTLAPGDG--AFYGPKLDFYVIDSLGRKWQTATVQLD----FQMPIRF----DLT 494

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  A G++   V +    +G++     ++   + G   +W   +AP ++ ++ +      
Sbjct: 495 YVDAAGQEQRPVMIHRAIMGSLERFIGILIEHYAGAFPVW---LAPVQVRVLPV---SDR 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  RL   G  V  D   E++G +   A +   P  ++VG +   + +V ++ 
Sbjct: 549 HHDYARRVEERLRAAGLRVEVDARDEKLGYKIRQAQVEKVPYMLVVGDREAQEGQVAVRS 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G     SLE+ +   + + +  +
Sbjct: 609 RDRGDLGSQSLEDFVRLITEKVAQRQ 634


>gi|157826951|ref|YP_001496015.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|166225492|sp|A8GVV1|SYT_RICB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157802255|gb|ABV78978.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 633

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 160/440 (36%), Gaps = 45/440 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + ++G+  W   G    + +   IR +  + G
Sbjct: 231 YLFMLEEAEKRDHRKLGKELDLF--HFQEEAQGMVFWHDKGWSVYNTIEQYIRRKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YIEVKTPVLVDKSLWELSGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-EEQITDETVSFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+    +      +     P E   +   + 
Sbjct: 407 YKDFGFTDIKVKFSDRPEVRAGSSETWDKAENALKEAVEKAGYSYTLNPGEGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G  V  +   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIESGVRVDINISPDKINYKIREFSNQKVPMIAVIGKQEKENKQVTIRRL 610

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I Y    
Sbjct: 611 GTTEQEVLSIEQLIEYIREE 630


>gi|84687895|ref|ZP_01015762.1| threonyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664089|gb|EAQ10586.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 649

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 150/449 (33%), Gaps = 53/449 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L  L+E    AE   H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 235 KKHLTFLEE----AEKRDHRRLGREMDLFHMQEEAPGQVFWHPNGWTIYTVLQDYMRRQQ 290

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG ++ Y + M  +    + A         P +      
Sbjct: 291 QRGGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQ 350

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    
Sbjct: 351 IFNVGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF-CTEDQIESETE 409

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       I+  LG  +  ++    P     S E    A+                 P E
Sbjct: 410 RFISFLAGIYKDLGFPTYKIKFSDRPDTRAGSDEIWDKAEKALLDATHKVTNDVELNPGE 469

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G        + 
Sbjct: 470 GAFYGPKLEFVLTD---------------------------AIGRDWQCGT---LQVDFV 499

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + A + G DG K   V +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 500 LPERLDANYIGEDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---IAPRQVVVA 556

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++   L   G     D   E+I  +         P+ + +G K V 
Sbjct: 557 SIVSD---ADDYVREVVDALRAKGVRAEADTRNEKINYKVREHSAGKVPVILAIGMKEVE 613

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  V ++         ++L+EV+   S  
Sbjct: 614 DRTVTLRRLGEKQTRVVALDEVVQELSTE 642


>gi|326800360|ref|YP_004318179.1| threonyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326551124|gb|ADZ79509.1| threonyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 641

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 163/450 (36%), Gaps = 43/450 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L      +   G+  WLP G      +   ++
Sbjct: 224 KASELADYLHMIEEAKKRDHRKLGKELELFA-FSERVGMGLPLWLPKGAALRQKLVDFLQ 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTD 116
             Q + G   +  P +   +L+V SG Y+ YG +  +     +  +  +  P +     +
Sbjct: 283 RAQMKAGYEPVVTPHIGHKNLYVTSGHYEKYGADSFQPIRTPQEGEEFLLKPMNCPHHCE 342

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+++  +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + 
Sbjct: 343 IYKTKPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQVKDEFK 401

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L +F  LG      +                  D      +   +       + 
Sbjct: 402 KVIDLVLYVFKALGFDDYTAQISLR--------------DPENKGKYIGSEENWLLAEAA 447

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             +  +   L ++ E   A +                  K    R  ++G I      Y+
Sbjct: 448 IVEAAEEKGLKTVTELGEAAFYGPKLDF---------MVKDALGRKWQLGTI---QVDYN 495

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + G+D + H  V +     G++    AV+     G+  +W   + P +  ++
Sbjct: 496 LPERFELEYTGSDNQKHRPVMIHRAPFGSLERFVAVLIEHCAGEFPLW---LTPEQFIIL 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +    +   +  +K+   L+        D   E++G +   A++   P  +IVG K V 
Sbjct: 553 PV---SEKYEEYAKKLLESLNNTDIRGLIDLRDEKVGRKIRDAEVKKIPYMLIVGEKEVE 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + ++    G    M++E          
Sbjct: 610 NGTISVRKHGEGDLGSMTIEAFSKQLIEEI 639


>gi|260548877|ref|ZP_05823099.1| prolyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260408045|gb|EEX01516.1| prolyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 571

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAFS 224



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQIIEIFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|124486137|ref|YP_001030753.1| hypothetical protein Mlab_1319 [Methanocorpusculum labreanum Z]
 gi|124363678|gb|ABN07486.1| threonyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 586

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 148/450 (32%), Gaps = 48/450 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  + FL + +E    AE   H+ +   ++  M      G   +LP G    +++    R
Sbjct: 178 KELEDFLKLQEE----AERRDHRKIGKEMKLFMFSDEGPGFPFFLPNGMIVRNSLLDYWR 233

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E     G  E+S P + +  LW  SG +D Y   M      +D+     P +      ++
Sbjct: 234 ELHAENGYQEISTPLIMNRCLWETSGHWDHYKDNMYATC-IDDEDYCIKPMNCPGGVMVY 292

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +   SYR LP    ++ L  R EL+    G+ R R F   DA+ F +           +
Sbjct: 293 ANEPHSYRELPMRLAELGLVHRHELKGTLHGLFRVRCFTQDDAHIF-MRKNQISDEIAGV 351

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++ + G +   +   + P     S E    A  G                 +  
Sbjct: 352 VRLINEVYTKFGFEYF-LELSTRPENSMGSDEDWEAATNGLKDALDLLKLPYTINEGDGA 410

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               K    R  + G I     +  + 
Sbjct: 411 FYGPKIDF---------------------------HLKDCLGRTWQCGTI-QLDFQMPIN 442

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   + +    + +     G++     ++     G+  +W   +AP +  ++ +  
Sbjct: 443 FDLAYVDENDERQRPIMIHRVCFGSIERFIGILTEHFAGRFPVW---LAPMQAKVLLVTK 499

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSK 415
             +      E+IYA L         D+  E+IG     A      P  +I+G K + D  
Sbjct: 500 KSES---YAEEIYAMLKDAKIRCELDNRNEKIGYMIRQAHYTERVPYMIIIGEKELEDHT 556

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V I+ R  G    M+ EE +   +    N 
Sbjct: 557 VSIRTRD-GKTVTMTPEEFLTKITSEIKNR 585


>gi|329893675|ref|ZP_08269809.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328923602|gb|EGG30914.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 571

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DAE+ SH+LMLR GMI + + G+Y+W+PLG K L  V  I+REE
Sbjct: 1   MRTSQTLISTLKETPADAEVISHRLMLRAGMIKKLASGLYTWMPLGLKVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDAAGAIELLMPVVQPAELWQESGRWAQYGPELLRMHDRHTREFCLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +     + +Y  M  +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDQASLEETYWVMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YSNVFDRLGLMYRPVEADTGSIGGSHSHEFHVLADSGEDDIAFSN 225



 Score =  225 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 3/198 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +     A  +D+      D  P+ K      RGIEVGHIF  G KYS  M+A    A
Sbjct: 371 VNWERDVTAAHIADLREVVEGDPSPDGKGILEIKRGIEVGHIFQLGQKYSEAMNAQVLDA 430

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDA 364
           +GK   + MG YGIG  R+VAA IE +HD KGIIWPD++AP++++++ +     +    A
Sbjct: 431 NGKAQTLSMGCYGIGISRIVAAAIEQNHDDKGIIWPDAMAPYQVAIVPLNMQKSEAVAQA 490

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA+L+  G +V  DD  E+ G +FA  +L+G P ++++G + +++ ++E KHR   
Sbjct: 491 AETLYAQLTDAGIEVLLDDRNERPGIKFADMELIGIPHRIVIGDRSLAEGQLEYKHRAAP 550

Query: 425 IREDMSLEEVINYASHRF 442
             E++++ + +     + 
Sbjct: 551 DSENIAVTDTLTVLMSKL 568


>gi|302391162|ref|YP_003826982.1| prolyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302203239|gb|ADL11917.1| prolyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 569

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ + P L+E P DAE+ SH+LMLR G++ +   GIYS LPLG K +  V  IIREE
Sbjct: 1   MKMSQMYSPTLKETPADAEVVSHQLMLRAGLMRKLGSGIYSHLPLGYKVIQKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P LQ A+LW ES R+  YG E++RL DR+ +    GPTHEEV+TD+ + 
Sbjct: 61  MNKAGAQEVLLPALQPAELWKESNRWADYGPELMRLEDRHKRDFCLGPTHEEVITDLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LPF  YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF+   E    SY KM+ S
Sbjct: 121 EVRSYKDLPFNLYQIQTKFRDEIRPRFGVLRSREFIMKDAYSFNPDKESLDESYEKMYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF R GL    + A++GPIGG  SHEF+VLAD+GE  V    +     
Sbjct: 181 YVEIFDRCGLDFRTVVADNGPIGGTDSHEFMVLADSGEDTVVFCSECDYSA 231



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 9/240 (3%)

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           D+  E  V+AD     V            +   D+              A          
Sbjct: 337 DIPDEVRVIADPSAMAVVNG------VTGANEADYHYTNVNPERDFTVDAIVDIREIKEG 390

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E   D     +    RGIEVG +F  GTKYS  M AT+   +GK   + MG YGIG  R 
Sbjct: 391 EPCID--CGAELTMTRGIEVGQVFKLGTKYSDSMKATYIDDNGKSQSIFMGCYGIGVTRT 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA IE +HD  GIIWP S+AP+ + ++ +  +D+  +   E +Y  L++ G +  +DD 
Sbjct: 449 VAAAIEQNHDDYGIIWPKSIAPYSVHIMQL-GNDEEIKRVSEDLYTALNQTGLEALYDDR 507

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F  ADL+G P+QVI+G   + D+K+EIK R T  +  ++ +  +       + 
Sbjct: 508 SERAGVKFNDADLIGCPIQVIIGKNSLEDNKLEIKLRQTDEKLKINADNPVPKIKELLAK 567


>gi|268590504|ref|ZP_06124725.1| hypothetical protein PROVRETT_06701 [Providencia rettgeri DSM 1131]
 gi|291314090|gb|EFE54543.1| proline--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 572

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+G     ++A++G IGG  SHEF VLA  GE  V  S
Sbjct: 181 YSKIFTRIGFDFRAVQADTGSIGGSASHEFQVLAKNGEDDVIFS 224



 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +         D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLALPEAFDLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +  DG +  V MG YGIG  R+VAA IE SHD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KASVQNEDGHNQIVTMGCYGIGVTRIVAAAIEQSHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + + ++++E
Sbjct: 486 SYRVKEVAEKLYADLKANGIDVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDNNQIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K R +  +E + LE VI++   + 
Sbjct: 546 YKSRRSDDKELVGLENVISFLKGKL 570


>gi|293569265|ref|ZP_06680563.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587971|gb|EFF19821.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 646

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 165/450 (36%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + + 
Sbjct: 343 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + ++    +     R                  D   T  +   D M     +   
Sbjct: 402 LELMVAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLK 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D + L+    +     A      + ++  +L   + +S   ++    F    ++   
Sbjct: 448 AAMDELELD--YFEAEGEAAFYGPKLDVQVKTALGTEETLSTIQLD----FLLPERF--- 498

Query: 298 MSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I + 
Sbjct: 499 -DLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVS 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ 
Sbjct: 555 V--DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDAT 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++   +       L   I+       N 
Sbjct: 613 VNVRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|255531804|ref|YP_003092176.1| threonyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255344788|gb|ACU04114.1| threonyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 641

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 162/450 (36%), Gaps = 48/450 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I +   RD      +L L      +   G+  WLP G    + +   +   Q 
Sbjct: 228 LTEYLHMIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGAALRERLVQFLTRAQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +   +L++ SG Y+ YGK+  +     +  +     P +     +I+++
Sbjct: 287 KAGYEQVVTPHIGHKNLYITSGHYEKYGKDAFQPIKTPQEGEEFFLKPMNCPHHCEIYKT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
             L +F  LG      +              S E   LA+T   +    K         E
Sbjct: 406 LVLYVFKSLGFDDYTAQVSLRDPENKAKYIGSDENWRLAETAIIEAADEKGLPTVVEYGE 465

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                               K    R  ++G I      Y+
Sbjct: 466 AAFYGPKLDF---------------------------MVKDALGRKWQLGTI---QVDYN 495

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + G+D + H  V +     G++    AV+     G   +W   ++P +  ++
Sbjct: 496 LPERFELEYTGSDNQKHRPVMIHRAPFGSLERFIAVLIEHCAGNFPLW---LSPEQFIIL 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +   D  +K+   L+        D   E+IG +   A++   P  +I+G K ++
Sbjct: 553 PI---SEKYEDYAKKVSDELNNSDIRGLIDFRDEKIGRKIRDAEVKKIPYMLIIGEKEMA 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + K  ++    G   +M+L+E         
Sbjct: 610 EGKASVRKHGEGDLGEMTLQEFSELLIKEI 639


>gi|125980520|ref|XP_001354284.1| GA11463 [Drosophila pseudoobscura pseudoobscura]
 gi|54642590|gb|EAL31337.1| GA11463 [Drosophila pseudoobscura pseudoobscura]
          Length = 462

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 218/464 (46%), Gaps = 40/464 (8%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRLFWPAL-VTPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPIAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++     R G  ++S+P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVDGNMKRAGGQKISLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR +P   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTAPISYRQMPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSEETARGT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG LSHE+  ++  GE  +            
Sbjct: 182 YSVVSEAYDRLFKQLEVPFVKVNAATGMMGGSLSHEYHYVSPVGEDTLLQCSSCGYA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                     S V       S   +     RG+EV H F  G K
Sbjct: 239 -------------------GNAEVLDSKVEASTDCPSCHSSHLSQVRGVEVAHTFLLGEK 279

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+A+ +E     + + WP  +AP+ + LI 
Sbjct: 280 YSKPLGATFLNTSGKPQSLVMGCYGIGITRVLASALEVLSTEQELRWPKLLAPYDVCLIG 339

Query: 354 IKAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +  + A       L  +G      ++  DD  E  IG +   A  LG PL ++VG
Sbjct: 340 PKQGSKEQQPAEVIENELLQHIGKICGDQELLHDDRKELTIGKRLLDAKRLGHPLTIVVG 399

Query: 408 SKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  V     K+E+     G + ++ + + +   +      + +L
Sbjct: 400 ATAVQQEAPKLELHV-SGGEKMELEINDALKLVAEYSRQKKSLL 442


>gi|116626335|ref|YP_828491.1| threonyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|116229497|gb|ABJ88206.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 644

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 152/443 (34%), Gaps = 36/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L +  I + +  G+  + P G      +   +R++  + 
Sbjct: 231 YLKQVEEAKKRDHRKLGKELDLFS--IQELAGPGLIFFHPKGGIIRKLLEDWMRDQYLKR 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   DLW  SG  + Y + M    + +D      P +      I+    +S
Sbjct: 289 GYSLVYTPHVAKLDLWKTSGHANFYAQNMFTPIELDDAEYQLKPMNCPFHILIYADRQRS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++   +R E      G+ R R F   DA+ F +    ++          + 
Sbjct: 349 YRDLPVRLGELGTVYRYERSGTLNGLFRVRGFTQDDAHIFCM-QSQAEEEVVNCLQFAID 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                G +       +               D G +  +                  D +
Sbjct: 408 TLAAYGFEKYDAEIST--------------WDGGASGKYDGTPDQWEMAEGALRRAVDKL 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            +N+  +      A      + KL D++    ++S    +      FG +Y         
Sbjct: 454 KINA--KVVADEAAFYGPKIDVKLVDAIGRKWQLSTVQFDFTLPRRFGLEY--------I 503

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DGK H  + +     G++     ++   + G   +W   +AP + +++ I        
Sbjct: 504 GEDGKAHQPIMVHRALYGSIERFFGILVEHYAGAFPVW---LAPVQATILPIT---DRQT 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    I  +L + G     D+  E++  +   A +   P  ++VG +     KV +++R 
Sbjct: 558 EYARGIKKQLEEAGIRATVDERNEKVNLKIRDAQMQKIPYMLVVGDREQESGKVAVRNRK 617

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              +   +L + I        + 
Sbjct: 618 HADQGVKTLADFIAEIRALIESK 640


>gi|297530568|ref|YP_003671843.1| prolyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297253820|gb|ADI27266.1| prolyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 567

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S 
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYSD 225



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 3/231 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E     +   +   +       ++      +        +  +D+   K  D  P+ K
Sbjct: 338 VNEDVTVIADHAVAAIVNGVCGANEEGYHYIGVNPGRDFAVSQYADLRFVKEGDPSPDGK 397

Query: 276 RVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGH+F  GTKYS  M+A +   +G+   + MG YGIG  R+VAA+ E   
Sbjct: 398 GTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENGQTQTMIMGCYGIGVSRLVAAIAEQFA 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP SVAPF I L+   A         E+ Y +L + G +V +DD  E+ G +FA
Sbjct: 458 DEHGLVWPASVAPFHIHLLTANAKSDEQHALAEEWYEKLGQAGFEVLYDDRPERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +DL+G PL+V VG +   +  VE+K R TG   D+ + E+++ A     +
Sbjct: 518 DSDLIGIPLRVTVGKR-AGEGVVEVKVRKTGETFDVPVSELVDTARRLLQS 567


>gi|260433159|ref|ZP_05787130.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416987|gb|EEX10246.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 652

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 155/448 (34%), Gaps = 53/448 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 238 KAYLHMLEE----AAKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWTIYTQLQDYMRRQQ 293

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG +D Y + M  +    + A         P +     +
Sbjct: 294 RRGGYVEVNTPQVVDRKLWERSGHWDKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVE 353

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T +       
Sbjct: 354 IFKQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFAQDDAHIFS-TEDQIGDECA 412

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       ++  LG  S  ++    P     S E    A+        +        P E
Sbjct: 413 RFIGFLTDVYKDLGFDSFKVKFSDRPEQRAGSDEVWDKAEEALLTATRAAGVEPELNPGE 472

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G    F   + 
Sbjct: 473 GAFYGPKLEFVLTD---------------------------AIGRDWQCGT---FQVDFV 502

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + AT+ GADG K   V +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 503 LPERLDATYIGADGAKHRPVMLHRACLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 559

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++   L   G     D   E+I  +     +   P+ + VG + V 
Sbjct: 560 SITS---EADDYVLEVVETLKAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVE 616

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASH 440
           +  V ++       +   L+ V    +H
Sbjct: 617 ERTVSVRRLGEKQTQVQPLDAVTKELAH 644


>gi|213969174|ref|ZP_03397313.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301384830|ref|ZP_07233248.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302064183|ref|ZP_07255724.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
 gi|302130620|ref|ZP_07256610.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926172|gb|EEB59728.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 571

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTTAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRSLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|261344716|ref|ZP_05972360.1| hypothetical protein PROVRUST_05973 [Providencia rustigianii DSM
           4541]
 gi|282567158|gb|EFB72693.1| proline--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 576

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+G     + A++G IGG+ SHEF VLA +GE  V  S
Sbjct: 181 YSKIFTRIGFDFRAVLADTGSIGGNASHEFQVLAQSGEDDVVFS 224



 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 117/208 (56%), Gaps = 3/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P   T D+ N  + D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLPLPETYDLRNVVVGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +  +G +  V MG YGIG  R+VAA IE SHD +GIIW D++APF+++++ +  H 
Sbjct: 426 KASVQNEEGHNQIVTMGCYGIGVTRIVAAAIEQSHDDRGIIWSDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + +  ++VE
Sbjct: 486 SYRVKEVAEKLYADLKAQGIDVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDTNQVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            K R +  +  + L+ V+++   + + N
Sbjct: 546 YKSRRSDDKALVGLDNVVSFLKEKLATN 573


>gi|91205350|ref|YP_537705.1| threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|122990926|sp|Q1RJ48|SYT_RICBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91068894|gb|ABE04616.1| Threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
          Length = 635

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 160/440 (36%), Gaps = 45/440 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + ++G+  W   G    + +   IR +  + G
Sbjct: 231 YLFMLEEAEKRDHRKLGKELDLF--HFQEEAQGMVFWHDKGWSVYNTIEQYIRRKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YIEVKTPVLVDKSLWELSGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-EEQITDETVSFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+    +      +     P E   +   + 
Sbjct: 407 YKDFGFTDIKVKFSDRPEVRAGSSETWDKAENALKEAVEKAGYSYTLNPGEGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G  V  +   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIESGVRVDINISPDKINYKIREFSNQKVPMIAVIGKQEKENKQVTIRRL 610

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I Y    
Sbjct: 611 GTTEQEVLSIEQLIEYIREE 630


>gi|323344262|ref|ZP_08084488.1| threonine--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323094991|gb|EFZ37566.1| threonine--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 654

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 166/450 (36%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L T    +  KG+  WLP G +    +  ++R+ 
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFT-FSERVGKGLPIWLPKGTELRLRLQDMLRKI 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F
Sbjct: 287 QKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    +R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 347 AWKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIF-CRPDQVKSEFLRV 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F      +   +                  D  + + +      D        
Sbjct: 406 MDIIQTVFKIFNFDNFEAQISLR--------------DPKDREKYIGA---DEVWEESEQ 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  +   +  +     AA      +         K    R  ++G I      Y+LP
Sbjct: 449 AIKEACAEKGLDAKIAYGEAAFYGPKLDF------MVKDAIGRRWQLGTI---QVDYNLP 499

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   D  K   V +     G++    AV+     G   +W   + P +++++ I
Sbjct: 500 QRFKLEYTDEDNVKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAILPI 556

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  +K+       G     DD  E+IG +    +L+  P  VIVG K  +D 
Sbjct: 557 ---SEKYNDYAKKVSKYFDAQGVRATIDDRNEKIGRKIRDNELMRVPYMVIVGEKEAADG 613

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ +  G +  M++EE     +   + 
Sbjct: 614 LVSMRKQGGGEQATMTMEEFAKRINGEVAE 643


>gi|238021436|ref|ZP_04601862.1| hypothetical protein GCWU000324_01336 [Kingella oralis ATCC 51147]
 gi|237868416|gb|EEP69422.1| hypothetical protein GCWU000324_01336 [Kingella oralis ATCC 51147]
          Length = 611

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 124/225 (55%), Positives = 162/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V AI+REE
Sbjct: 45  MKASQFFISTLKEAPAEAVLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAIVREE 104

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D A  + PT EE++TDI R 
Sbjct: 105 MNRAGAIELLMPVVQPADLWKESGRWDFYGDELLRITDRHDNAFCFSPTCEELITDIVRK 164

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF    E  K +Y  M+ +
Sbjct: 165 EINSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADFESLKATYQTMYDA 224

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF+RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 225 YCRIFNRLGLDYRPVAADTGSIGGTGSHEFQVLADSGEDVIAYSD 269



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVS 278
              +    +          DD            A      D+ N    D  P  K     
Sbjct: 388 KVYADFACEKGADWVIGANDDDHHYTGFNFGRDAAEPEFVDLRNVIAGDPSPCGKGSLKL 447

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KYS  ++A+F  ++GK   ++MG YGIG  R+VAA IE ++D +GI
Sbjct: 448 ARGIEVGHVFQLRDKYSAALNASFLDSNGKSQIMEMGCYGIGITRIVAAAIEQNNDERGI 507

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW +++APF + ++ +        R+A ++IYA L   G DV  DD  E+ G     ++L
Sbjct: 508 IWTEAMAPFSVVIVPMNYKKSNSVREAADQIYADLQAAGVDVLLDDRDERAGVLLNDSEL 567

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           LG P ++++G + + +  VE   R +G    + L E++   
Sbjct: 568 LGIPHRIVIGDRALKEGNVEYAERRSGESISVPLNEIVAKI 608


>gi|242238324|ref|YP_002986505.1| prolyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242130381|gb|ACS84683.1| prolyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 572

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFG+MR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGIMRAREFLMKDAYSFHTTQESLQITYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLAASGEDDIVFS 224



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 118/207 (57%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWERDVTIPQIADIRNVVEGDQSPDGRGSLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +  DG++  + MG YGIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQVEDGRNQVLTMGCYGIGVTRVIAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 486 SFRVQEVAESIYQQLRAKGIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDNDDIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            KHR  G +E + + +++N+ + + ++
Sbjct: 546 YKHRRKGEKEMIKVGDIVNFLTVQITH 572


>gi|265751997|ref|ZP_06087790.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|263236789|gb|EEZ22259.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 646

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 164/460 (35%), Gaps = 61/460 (13%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 226 KMLDEYLVMLEEAKKRDHRKIGKEMDLFM-FTDMVGKGLPMWLPKGTALRIRLQDFLRRI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + + +L++ SG Y  YGK+  +        +     P +      I+
Sbjct: 285 QARYDYQEVMCPPIGNKNLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 345 KNSPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHLF-CRPDQVKEEFLRV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +F  +  +++  +            IG D + E        E  +  +      
Sbjct: 404 MDIINIVFKSMNFENVEAQISLRDKVNREKYIGSDENWE------KAEQAIIEA------ 451

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                                             E    +    K        +G  +  
Sbjct: 452 ------------------------CEEKGLTAKVEYGEAAFYGPKLDFMVKDAIGRRWQL 487

Query: 291 GT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GT    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   +
Sbjct: 488 GTIQVDYNLPERFQLEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---L 544

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P +++++ I    +   +  EK+ A L K       DD  E+IG +    ++   P  +
Sbjct: 545 TPDQVAILPI---SEKFNEYAEKVKAELRKYDVRAIVDDRNEKIGRKIRDNEMKRIPYML 601

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IVG K   + +V ++ +  G +  M +EE     +   SN
Sbjct: 602 IVGEKEAENGEVAVRKQGEGDKGTMKIEEFGKNLAEEVSN 641


>gi|255019923|ref|ZP_05291997.1| Threonyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254970582|gb|EET28070.1| Threonyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 454

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 152/447 (34%), Gaps = 40/447 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD       L L +  I +    G+  W P G +    +    R+   R 
Sbjct: 41  YLAQMAEAERRDHRRIGRDLDLFS--IQEDAGGGLVFWHPQGAQIRKVIEDYWRQAHLRG 98

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +    LW  SG  D Y   M +  +   +     P +      I+++ ++S
Sbjct: 99  GYELLYTPHIAHEKLWFTSGHKDFYADSMFQPMEDEGEPYQLKPMNCPFHILIYKNTLRS 158

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + ++   +R E+     G+MR R F   DA+ F   P+  +     +      
Sbjct: 159 YRDLPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIF-CRPDQIEAEIAGVLALTQN 217

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G +   +   + P     S E    A                             
Sbjct: 218 ILGTFGFQRYEVHLSTRPEHSVGSDEIWETATRALEGALARAGLEYRVDAGGG------- 270

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++++     + 
Sbjct: 271 -------------AFYGPKIDLKIEDAIGRKWQCSTIQLD----FNLPQRFAM----EYV 309

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +   + +     G++     ++   ++GK  +W   +AP ++ ++ I    +   
Sbjct: 310 DEDGSRRTPIMVHRAIFGSIERFFGILIEHYEGKFPLW---LAPTQVVVLPI---SEHQA 363

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + + + L   G  V  D   E+IG +     L   P   +VG +  +  +V ++ R 
Sbjct: 364 DYAQMVQSTLGAAGLRVESDLRNEKIGYKIRAHTLRRVPFLAVVGEREKAAGEVALRSRD 423

Query: 423 TGIREDMSLEEVINYASHRFSNNRPVL 449
                 + L +V         + +  L
Sbjct: 424 GVDLGSLKLADVAANLKAMDESRQNAL 450


>gi|254881560|ref|ZP_05254270.1| threonyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294778842|ref|ZP_06744259.1| threonine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|254834353|gb|EET14662.1| threonyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294447295|gb|EFG15878.1| threonine--tRNA ligase [Bacteroides vulgatus PC510]
          Length = 646

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 164/460 (35%), Gaps = 61/460 (13%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 226 KMLDEYLVMLEEAKKRDHRKIGKEMDLFM-FTDMVGKGLPMWLPKGTALRIRLQDFLRRI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + + +L++ SG Y  YGK+  +        +     P +      I+
Sbjct: 285 QARYDYQEVMCPPIGNKNLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 345 KNSPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHLF-CRPDQVKEEFLRV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +F  +  +++  +            IG D + E        E  +  +      
Sbjct: 404 MDIINIVFKSMNFENVEAQISLRDKVNREKYIGSDENWE------KAEQAIIEA------ 451

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                                             E    +    K        +G  +  
Sbjct: 452 ------------------------CEEKGLTAKVEYGEAAFYGPKLDFMVKDAIGRRWQL 487

Query: 291 GT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GT    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   +
Sbjct: 488 GTIQVDYNLPERFQLEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---L 544

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P +++++ I    +   +  E++ A L K       DD  E+IG +    ++   P  +
Sbjct: 545 TPDQVAILPI---SEKFNEYAEQVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYML 601

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IVG K   + +V ++ +  G +  M +EE     +   SN
Sbjct: 602 IVGEKEAENGEVAVRKQGEGDKGTMKIEEFGKNLAEEVSN 641


>gi|150006539|ref|YP_001301283.1| threonyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|319642944|ref|ZP_07997580.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|166223322|sp|A6L7J7|SYT_BACV8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149934963|gb|ABR41661.1| threonyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|317385492|gb|EFV66435.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 646

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 164/460 (35%), Gaps = 61/460 (13%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 226 KMLDEYLVMLEEAKKRDHRKIGKEMDLFM-FTDMVGKGLPMWLPKGTALRIRLQDFLRRI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + + +L++ SG Y  YGK+  +        +     P +      I+
Sbjct: 285 QARYDYQEVMCPPIGNKNLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 345 KNSPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHLF-CRPDQVKEEFLRV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +F  +  +++  +            IG D + E        E  +  +      
Sbjct: 404 MDIINIVFKSMNFENVEAQISLRDKVNREKYIGSDENWE------KAEQAIIEA------ 451

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                                             E    +    K        +G  +  
Sbjct: 452 ------------------------CEEKGLTAKVEYGEAAFYGPKLDFMVKDAIGRRWQL 487

Query: 291 GT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GT    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   +
Sbjct: 488 GTIQVDYNLPERFQLEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---L 544

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P +++++ I    +   +  E++ A L K       DD  E+IG +    ++   P  +
Sbjct: 545 TPDQVAILPI---SEKFNEYAEQVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYML 601

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IVG K   + +V ++ +  G +  M +EE     +   SN
Sbjct: 602 IVGEKEAENGEVAVRKQGEGDKGTMKIEEFGKNLAEEVSN 641


>gi|83589892|ref|YP_429901.1| prolyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|114152213|sp|Q2RJN1|SYP_MOOTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83572806|gb|ABC19358.1| prolyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 573

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AEI SH+L+LR G I + + GIY++LPLG++ L  +  IIREE
Sbjct: 1   MRASELLAPTLRETPAEAEIVSHQLLLRGGFIRKAAAGIYTYLPLGRRVLAKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR++ YG+EM RL DR+ +    GPTHEE++T + RS
Sbjct: 61  MDRAGGQEVVLPIIQPAELWQESGRWEVYGEEMFRLQDRHRRQFCLGPTHEEIITALVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFDL  EG   SY KM+ +
Sbjct: 121 EVTSYKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDLDQEGLNQSYRKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F R GL   P++A+SG IGG+ SHEF+ LA  GE  +   ++     
Sbjct: 181 YSNVFRRCGLDFRPVQADSGAIGGNYSHEFMALATAGEALLVYCRECDYAA 231



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 96/175 (54%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     ARGIEVG +F  GTKYS  + A +  A G++H + MG YGIG  R +AA+
Sbjct: 392 CPQCGAPLAQARGIEVGQVFQLGTKYSGALGANYTDARGQEHPIVMGCYGIGVSRTMAAI 451

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E  HD +GIIWP SVAP+++ +I     D   R   E +Y  L+  G +V +DD  E+ 
Sbjct: 452 VEQCHDDQGIIWPLSVAPYQVVIIPASLKDDGQRQVAEGLYRELAAAGVEVVYDDRDERA 511

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G +F  ADL+G+PL++ VG + ++   V++K R       + LE +        +
Sbjct: 512 GLKFVEADLIGYPLRITVGKRTITSGTVDVKWRSRKEETPLPLEGLSAQIQALLA 566


>gi|325295461|ref|YP_004281975.1| threonyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065909|gb|ADY73916.1| threonyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 658

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 156/466 (33%), Gaps = 60/466 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD  +   +L L +    +   G+  W P G      +   + +E  
Sbjct: 229 LEEYLHRLEEAKKRDHRVLGKQLDLFSIY-EEAGSGLVFWHPNGAIIRREIEEWVEKEHE 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKA------------------ 103
           + G   +  P +  ADLW  SG YD Y + M  +    +D+                   
Sbjct: 288 KRGYQRIYTPHIMKADLWKISGHYDFYKENMFFVPVVEHDEEEKLGNEKVPLTCEEVERA 347

Query: 104 --MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
                 P +      I++S  +SY++LP  F++     R E      G++R R F   D 
Sbjct: 348 NWYAVKPMNCPGHILIYKSQPRSYKDLPLRFFEFGTVHRYEKSGSLHGLLRVRGFTQDDG 407

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           + F   P+  K     +    + +     L  + +   + P     S E    A      
Sbjct: 408 HIF-CRPDQLKDEILGVLDYVMELLSVFKLDYV-INIGTKPEKYIGSDEAWEHATQALID 465

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
               +      +  +                     A      +  + D++         
Sbjct: 466 ALKERGLEYNIVEGDG--------------------AFYGPKIDIAVLDAIGRKWDGPTI 505

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
            ++    F    ++      T+   DG K   V +    +G++     ++   + G   +
Sbjct: 506 QVD----FNLPERF----DLTYVDRDGEKKRPVMVHRAIMGSIERFIGLLIEHYAGLFPL 557

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W   +AP ++ +I +        +  E ++ +L +VG     DD   ++G +   A+LL 
Sbjct: 558 W---LAPTQVVVIPV---SDKYINYAENVFRKLKEVGIRAKLDDESGKVGYKIRKAELLK 611

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P  VIVG K    + V ++ +  G    M +   ++         
Sbjct: 612 IPYMVIVGEKEQESNTVSVRSKKEGDLGSMEISNFLDKILTEIKEK 657


>gi|189501972|ref|YP_001957689.1| threonyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497413|gb|ACE05960.1| hypothetical protein Aasi_0559 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 644

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 164/449 (36%), Gaps = 41/449 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +L+E   R+ +    +L L T    +   G+  WLP G    + +   +R  
Sbjct: 230 KELKAYLELLEEAQKRNHQKIGKELKLFT-FSEKVGIGLPLWLPRGTVLREQLEQFLRRA 288

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q + G   +  P +   +L++ SG YD YG++  +        +     P +     +I+
Sbjct: 289 QVKAGYQPVVTPHIGHKELYMTSGHYDKYGEDSFQPIRTPHEGEEFFLKPMNCPHHCEIY 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   +SYR+LP    +    +R E      G++R+R F   DA+ F    +  +  + K+
Sbjct: 349 KHEPRSYRDLPVRLAEFGTVYRYEQHGELHGLVRTRGFTQDDAHIFCRN-DQVREEFAKV 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F  LG      R                  D  +   +               
Sbjct: 408 IDLVTYVFSALGFSDYTARLSFR--------------DPEQLHKYIGDQEDWDKAEEAIE 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +   +  LN+      A +                  K    R  ++G +      Y LP
Sbjct: 454 EVAKLRKLNTTKALGEAAFYGPKLDF---------MVKDALGRNWQLGTV---QLDYQLP 501

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                ++ GAD K H  V +     G++    A++     GK  +W   +AP +++++ I
Sbjct: 502 VRFDLSYTGADNKKHRPVMIHRAPFGSLERFIAILLEHTAGKLPLW---LAPEQVAILPI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +      E++   L       F D   E+IG +   A+L   P   I+G K   + 
Sbjct: 559 ---SEKFAAYAEEVNQNLRNKDIRCFIDHRDEKIGKKIREAELSKIPYMFIIGEKEQLER 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V ++ +  G +    +++++       S
Sbjct: 616 TVSVRKQGAGDQGSFPIDKLVQEIVEDIS 644


>gi|330964813|gb|EGH65073.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 571

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|56419792|ref|YP_147110.1| prolyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81819753|sp|Q5L0J4|SYP_GEOKA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56379634|dbj|BAD75542.1| proline-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 567

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFMMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S 
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYSD 225



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 3/229 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +           ++      +        +  +D+   K  D  P+ K  
Sbjct: 340 EDVTVIADHAVAAITNGVCGANEEGYHYIGVNPGRDFAVSQYADLRFVKEGDPSPDGKGT 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIEVGH+F  GTKYS  M+A +   +G+   + MG YGIG  R+VAA+ E   D 
Sbjct: 400 IRFARGIEVGHVFKLGTKYSEAMNAVYLDENGQTQTMIMGCYGIGVSRLVAAIAEQFADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++WP SVAPF I L+   A     R   E+ Y +L + G +V +DD  E+ G +FA +
Sbjct: 460 HGLVWPASVAPFHIHLLTANAKSDEQRALAEEWYEKLGQAGFEVLYDDRPERAGVKFADS 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           DL+G PL+V VG +   +  VE+K R TG   D+ + E+++ A     +
Sbjct: 520 DLIGIPLRVTVGKR-AGEGVVEVKVRKTGETFDVPVSELVDTARRLLQS 567


>gi|115475758|ref|NP_001061475.1| Os08g0295300 [Oryza sativa Japonica Group]
 gi|38175524|dbj|BAD01219.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|38175707|dbj|BAD01414.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113623444|dbj|BAF23389.1| Os08g0295300 [Oryza sativa Japonica Group]
 gi|215687347|dbj|BAG91912.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 745

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 167/449 (37%), Gaps = 43/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 336 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 391

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y + M    +   +     P +      +F
Sbjct: 392 QQYRDRGYQEVLSPNIYNMQLWETSGHAANYKENMFVF-EIEKQEFGLKPMNCPGHCLMF 450

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +
Sbjct: 451 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRESQIKDEVKAV 509

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P       E    A+   T+              +  
Sbjct: 510 LDFINYVYEIFGFKY-ELELSTRPEKYLGDIETWNKAEQQLTEALNEFGKPWQINEGDG- 567

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  +FD+L    + +   ++    F    ++ L 
Sbjct: 568 -------------------AFYGPKIDIGVFDALKRKFQCATLQLD----FQLPLRFKLT 604

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +     +  V +    +G++  + A++   ++GK   WP  ++P +  + +I ++
Sbjct: 605 YSA--EDEAKLERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSISSN 659

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V 
Sbjct: 660 S---VEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVS 716

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R       +S++++I       +  +
Sbjct: 717 VRVRDKAELATVSIDDIITRFKEEVAAYK 745


>gi|330813582|ref|YP_004357821.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486677|gb|AEA81082.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 638

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 160/440 (36%), Gaps = 44/440 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +T       + S G   W   G      +   +R++Q  
Sbjct: 232 YLHNLEE----AEKRDHRKLGKTMDLFHFQEESPGAVFWHQKGWALFQTLVDFMRQKQLE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P +    LW +SG ++ + + M   +  +++     P +      I+   +K
Sbjct: 288 AGYQEVNTPEIIDRVLWEKSGHWEKFQEYMYTTSTPDERTFAIKPMNCPGHCQIYNQGLK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R E      G+MR R F   DA+ F  T +       K+    L
Sbjct: 348 SYKDLPLKLSEFGKVHRYEPSGSLHGLMRVRSFTQDDAHIF-CTEDQITEESVKVTKLIL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G ++I ++    P            ++    +   +          E       
Sbjct: 407 DIYKAFGFENITLKYADRPAKRVGDDSVWDQSEKALLEAIKASKVDYTINKGEG------ 460

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A         L D++  + +     +++               AT+
Sbjct: 461 --------------AFYGPKIEFVLRDAIGRDWQCGTLQVDLNLPGRL--------DATY 498

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DGK    V +     G++     ++   + GK  +W   ++P +++++ I       
Sbjct: 499 VDKDGKKKTPVMLHRALFGSLERFTGILIEHYAGKLPLW---LSPVQVAILPIN---DEH 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I  +L K+      D   E+I  +     +   P+ +I GSK V +  + ++  
Sbjct: 553 HDYAKEILNQLEKISIRPIIDLRNEKINYKIREHSVGKIPILMICGSKEVQNKTITLRRL 612

Query: 422 LTGIREDMSLEEVINYASHR 441
               ++  SLE++I+  S  
Sbjct: 613 GQEDQQTESLEKIISSLSKE 632


>gi|237807601|ref|YP_002892041.1| prolyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259511628|sp|C4LBX6|SYP_TOLAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|237499862|gb|ACQ92455.1| prolyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 574

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRTSQYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLHKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+S+P +Q A+LW ESGR++ YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNKAGAIEVSMPVVQPAELWQESGRWEQYGPELCRLTDRHNRPFVLGPTHEEVVTALVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSF +  E    +Y KM  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFTMKDAYSFHMNKESLIETYGKMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL   P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YCNIFSRMGLDFRPVLADTGSIGGTGSHEFHVLANSGEDLIAFS 224



 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARG 281
           +    DF   +   DF     +  +           +D+ N    D  P  K      RG
Sbjct: 355 AAHLADFVCGANENDFH----MTGMNWDRDVQGYEVADIRNVVEGDPSPCGKGTLLLKRG 410

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GTKYS  M+AT     GK   ++MG YGIG  RVVAA IE + D +GIIW 
Sbjct: 411 IEVGHIFQLGTKYSEAMNATVLNEAGKATVMEMGCYGIGVTRVVAAAIEQNFDDRGIIWT 470

Query: 342 DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           DS+APF++ +I +  H  +  ++  E+ Y  L   G +V  DD  E+ G  FA  +L+G 
Sbjct: 471 DSIAPFQVVIIPMNMHKSERVQELAERFYNELQAAGVEVLLDDRKERPGVMFADMELIGI 530

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P  +++G + + +  VE K+R +G + +++++E+I     + + 
Sbjct: 531 PHSIVIGDRSIDNGVVEYKYRRSGDKTEVAIDEIIAKIKAQLNK 574


>gi|300772848|ref|ZP_07082717.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759019|gb|EFK55846.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 641

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 157/453 (34%), Gaps = 54/453 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD      +L L      +   G+  WLP G      +   ++  Q 
Sbjct: 228 LTDYLKFIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGAALRQKLIDFMQRAQL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P +    L+V SG Y+ YG++  +        +     P +     +I+++
Sbjct: 287 KAGYEPVVTPHIGHKQLYVTSGHYEKYGEDSFQPIKTPVEGEEFFLKPMNCPHHCEIYKT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAE-------SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
             L +F  LG +    +         +  IG   S E   LA+    +    K       
Sbjct: 406 LVLYVFGALGFEDYIAQVSLRDPENRTKYIG---SDENWALAERAIIEAADEKGLPTVVE 462

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E   +   +                               K    R  ++G I     
Sbjct: 463 YGEAAFYGPKLDF---------------------------MVKDALGRKWQLGTI---QV 492

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            Y+LP      + G+D  K   V +     G++    AV+     G+  +W   +AP + 
Sbjct: 493 DYNLPERFELEYTGSDNAKHRPVMIHRAPFGSLERFIAVLIEHCAGRFPLW---LAPEQF 549

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ +    +   +  +K+   L+        D   E++G +   A++   P  +IVG K
Sbjct: 550 IVLPV---SEKYEEYAQKLLESLNNSDIRGLIDLRDEKVGRKIRDAEVKKLPYMLIVGEK 606

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                 V ++   +G    M+ EE         
Sbjct: 607 EAESGTVSVRKHGSGDVGSMTPEEFREVLIKEI 639


>gi|322420273|ref|YP_004199496.1| prolyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126660|gb|ADW14220.1| prolyl-tRNA synthetase [Geobacter sp. M18]
          Length = 573

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR+D YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWDFYGKELLRFKDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR +P   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EIRSYRQMPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A++G IGG+ SHEF+VLAD+GE  +          
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGNYSHEFMVLADSGEDAIVSCSCCEYAA 231



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 107/176 (60%), Gaps = 3/176 (1%)

Query: 259 TSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             D+ N  + D+ P     K    RGIEVGH+F  GTKYS  ++A+F  A+GK+  + MG
Sbjct: 381 YVDIRNVVIGDACPRCESGKLEIWRGIEVGHVFKLGTKYSKALNASFLDANGKEQIIFMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA IE +HD  GII+P  +APF   +  + A +   + A E+IY+ L + 
Sbjct: 441 CYGIGIGRTVAACIEQNHDENGIIFPIPIAPFHCIVSALSAKEDEVKAASEQIYSELLEA 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G +V  DD  E+ G +F  ADL+G PL+++VG+K + D KVE+K R +G  E + +
Sbjct: 501 GVEVLLDDRDERPGFKFKDADLIGIPLRLVVGAKNLVDGKVELKERRSGEVEILPI 556


>gi|237800208|ref|ZP_04588669.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023065|gb|EGI03122.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 571

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +V+V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRVVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|253700848|ref|YP_003022037.1| threonyl-tRNA synthetase [Geobacter sp. M21]
 gi|259516486|sp|C6DYJ5|SYT_GEOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|251775698|gb|ACT18279.1| threonyl-tRNA synthetase [Geobacter sp. M21]
          Length = 636

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/445 (19%), Positives = 157/445 (35%), Gaps = 44/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R+E  + G
Sbjct: 232 YLARIEEAKKRDHRKLGRELDLFS-FNDEVGAGLVIWHPKGAMLRTILEDFERKEHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG Y++Y + M      ++++    P +      I+RS ++SY
Sbjct: 291 YDIVLGPQILKTELWQRSGHYENYRENMYFTTV-DEQSYGVKPMNCLAHMMIYRSQLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+    TP+        +      +
Sbjct: 350 RDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHIL-CTPDQLDAEIKGVIQFVTEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +   M   + P     S +   LA +                        D   
Sbjct: 409 MGIFGFEF-EMELSTRPEKSIGSDDAWELATSAL-----------------LNALKDSGR 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              I E   A Y    D+      D          R  +   I      ++LP     T+
Sbjct: 451 PYEINEGDGAFYGPKIDIKLRDALD----------RRWQCATI---QCDFTLPERFDLTY 497

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG K   V +    +GA+     V+     G    W   +AP + +++ +  +    
Sbjct: 498 VDADGEKKRPVMVHRVILGAIERFIGVLIEHFAGNFPTW---LAPVQATIVTVTDN---Q 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +  + +L   G  V  D   E++G +   A L   P  ++VG K V    +  + R
Sbjct: 552 IPYAQAAFDKLRAAGIRVQKDFRNEKLGFKIREAQLQKIPYMLVVGDKEVESGMLAPRFR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                E M+ E+ I +  +   + +
Sbjct: 612 DGKNLESMTPEQFITFIENEVKSYK 636


>gi|241761215|ref|ZP_04759303.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374122|gb|EER63619.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 659

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 147/458 (32%), Gaps = 56/458 (12%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L  L+E   RD      ++ L    + Q ++G   W P G      + A +R  
Sbjct: 233 KQLKVHLERLEEAQKRDHRRLGQEMDLF--HLQQEAQGSVFWHPNGYTIWLQLEAYLRRR 290

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYG 107
                  E+  P L  A LW  SG +  + + M  + D                  M   
Sbjct: 291 MKNANYKEVKTPQLMDAALWEASGHWGKFRENMFVVPDEIPSTDPDKPVLSGKGNLMALK 350

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      IF+  I+SYR LP    +     R+E      G+MR R+    DA+ F  T
Sbjct: 351 PMNCPAHIQIFKQGIRSYRELPLRMLEFGCCHRNEAHGALHGLMRVRQLTQDDAHIF-CT 409

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            E               I+  LG  S  ++    P       E    A+ G         
Sbjct: 410 AEQIVTETKDFVNLLDSIYRDLGFTSYAVKLSLRPELRAGDDELWDNAENGLRSALEQVG 469

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             D+        F        + +                             R  + G 
Sbjct: 470 ITDYEELPGEGAFYGPKLEFHLTD--------------------------AIGRTWQCGT 503

Query: 287 IFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                  Y LP  + A++   DG +   V +    IG       ++   H G+  +W   
Sbjct: 504 ---LQLDYVLPERLDASYVAEDGSRKRPVMLHRAIIGTFERFIGILIEHHAGRFPLW--- 557

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP +  +  I +         E +  ++   G  V  D   E+I  +     L   P  
Sbjct: 558 MAPVQAVVATIVS---EADSFAESVVEKMKAAGLRVVSDIRNEKINYKIREHSLTKVPNI 614

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++VG +   + KV I+   +  +  +S++E I      
Sbjct: 615 LVVGKREAEEGKVAIRKLGSRDQIILSVDEAIALLLEE 652


>gi|56551661|ref|YP_162500.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260752754|ref|YP_003225647.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|73919847|sp|Q5NPH1|SYT_ZYMMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56543235|gb|AAV89389.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552117|gb|ACV75063.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 659

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 147/458 (32%), Gaps = 56/458 (12%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L  L+E   RD      ++ L    + Q ++G   W P G      + A +R  
Sbjct: 233 KQLKAHLERLEEAQKRDHRRLGQEMDLF--HLQQEAQGSVFWHPNGYTIWLQLEAYLRRR 290

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYG 107
                  E+  P L  A LW  SG +  + + M  + D                  M   
Sbjct: 291 MKNANYKEVKTPQLMDAALWEASGHWGKFRENMFVVPDEIPSTDPDKPVLSGKGNLMALK 350

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      IF+  I+SYR LP    +     R+E      G+MR R+    DA+ F  T
Sbjct: 351 PMNCPAHIQIFKQGIRSYRELPLRMLEFGCCHRNEAHGALHGLMRVRQLTQDDAHIF-CT 409

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            E               I+  LG  S  ++    P       E    A+ G         
Sbjct: 410 AEQIVTETKDFVNLLDSIYRDLGFTSYAVKLSLRPELRAGDDELWDNAENGLRSALEQVG 469

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             D+        F        + +                             R  + G 
Sbjct: 470 ITDYEELPGEGAFYGPKLEFHLTD--------------------------AIGRTWQCGT 503

Query: 287 IFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                  Y LP  + A++   DG +   V +    IG       ++   H G+  +W   
Sbjct: 504 ---LQLDYVLPERLDASYVAEDGSRKRPVMLHRAIIGTFERFIGILIEHHAGRFPLW--- 557

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP +  +  I +         E +  ++   G  V  D   E+I  +     L   P  
Sbjct: 558 MAPVQAVVATIVS---EADSFAESVVEKMKAAGLRVVSDIRNEKINYKIREHSLTKVPNI 614

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++VG +   + KV I+   +  +  +S++E I      
Sbjct: 615 LVVGKREAEEGKVAIRKLGSRDQIILSVDEAIALLLEE 652


>gi|269216980|ref|ZP_06160834.1| threonine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129787|gb|EEZ60871.1| threonine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 587

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 159/453 (35%), Gaps = 50/453 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           RSK  L   +    +AE   H+ + R     M+     G   WLP G +  +++     +
Sbjct: 175 RSKEELAEHERMVAEAEKRDHRRIGREMELFMMADEGPGFPFWLPNGMRLKNSLMQYWMD 234

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            Q+  G  ++  P + +  LW  SG +D Y + M    + + +     P +      I++
Sbjct: 235 MQDAYGYEQVDTPIILNKSLWETSGHWDHYKENMYT-TEIDGEEYAVKPMNCPGACLIYK 293

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR+LP    +     R EL+    G+ R R F   DA+ F + P+          
Sbjct: 294 SKPRSYRDLPLKLAEAGKDHRHELKGALHGLFRVRAFTQDDAHLF-IRPDQITEQVTDTA 352

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                 + + G     +   + P     S E   LA+ G          +D+ +   +  
Sbjct: 353 HLISTYYEQFGFPYR-VELSTRPEDSMGSDEDWELAEAGLRAAL-EAMGVDYILNEGDGA 410

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYS 295
           F                Y    D H +              R  + G I   F     + 
Sbjct: 411 F----------------YGPKIDFHLQDCLG----------RTWQCGTIQLDFQLPQNF- 443

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG K   + +   G G+      ++   + GK   W   ++P ++ ++ +
Sbjct: 444 ---ELEYTDADGMKKRPIMIHRAGFGSFERFIGMLTEQYAGKFPTW---LSPCQVKVLPV 497

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSD 413
               +  R+    +Y  L   G     D+  E+IG +   A  +   P  +I+G K  + 
Sbjct: 498 ---SEKHREYARGVYDALRAAGIRAKLDERDEKIGYKIREARGIDRVPYMLILGEKEENA 554

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             + ++ R      +  L E I   +      R
Sbjct: 555 GNISVRDRSN-ETVERDLGEFIADVTAEIEERR 586


>gi|330872665|gb|EGH06814.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 571

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P  A +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPAVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|227550587|ref|ZP_03980636.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257888612|ref|ZP_05668265.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257897010|ref|ZP_05676663.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257898951|ref|ZP_05678604.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293378702|ref|ZP_06624860.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293571021|ref|ZP_06682064.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227180295|gb|EEI61267.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257824666|gb|EEV51598.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257833575|gb|EEV59996.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257836863|gb|EEV61937.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291608947|gb|EFF38226.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292642630|gb|EFF60782.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 647

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 165/450 (36%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + + 
Sbjct: 343 KNAIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + ++    +     R                  D   T  +   D M     +   
Sbjct: 402 LELMVAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLK 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D + L+    +     A      + ++  +L   + +S   ++    F    ++   
Sbjct: 448 AAMDELELD--YFEAEGEAAFYGPKLDVQVKTALGTEETLSTIQLD----FLLPERF--- 498

Query: 298 MSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I + 
Sbjct: 499 -DLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVS 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ 
Sbjct: 555 V--DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDAT 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++   +       L   I+       N 
Sbjct: 613 VNVRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|261419457|ref|YP_003253139.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319766272|ref|YP_004131773.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261375914|gb|ACX78657.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317111138|gb|ADU93630.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 567

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFMMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S 
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYSD 225



 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 127/249 (51%), Gaps = 15/249 (6%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG  +S +  V+AD     +          +   N +    I +N   +   + YA
Sbjct: 332 SLGPIG--VSEDVTVIADHAVAAIVNG-------VCGANEEGYHYIGVNPGRDFAVSQYA 382

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   K  D  P+ K      RGIEVGH+F  GTKYS  M+A +   +G+   + MG
Sbjct: 383 ---DLRFVKEGDPSPDGKGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENGQTQTMIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+VAA+ E   D  G++WP SVAPF I L+   A     R   E+ Y +L + 
Sbjct: 440 CYGIGVSRLVAAIAEQFADEHGLVWPASVAPFHIHLLTANAKSDEQRALAEEWYEKLGQA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G +FA +DL+G PL+V VG +   +  VE+K R TG   D+ + E++
Sbjct: 500 GFEVLYDDRPERAGVKFADSDLIGIPLRVTVGKR-AGEGVVEVKVRKTGETFDVPVSELV 558

Query: 436 NYASHRFSN 444
           + A     +
Sbjct: 559 DTARRLLQS 567


>gi|254466098|ref|ZP_05079509.1| threonyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206687006|gb|EDZ47488.1| threonyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 648

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 154/449 (34%), Gaps = 53/449 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G K    +   +R +Q
Sbjct: 234 KAHLHMLEE----AAKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWKVYTTLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            + G +E++ P +    LW  SG ++ Y + M  +    + A         P +      
Sbjct: 290 EKGGYVEVNTPQVVDRRLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F    +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFCA-EDQIEAETK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       I+  LG +   ++    P     S E    ++        +        P E
Sbjct: 409 KFIDFLSEIYKDLGFEKFSVKFSDRPEKRSGSDEVWDKSEAALKAATEAAGCAYDLNPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G        + 
Sbjct: 469 GAFYGPKLEFVLTD---------------------------AIGRDWQCGT---LQVDFV 498

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + AT+ GADG K   V +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 499 LPERLDATYIGADGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 555

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +         +++ A L K G     D   E+I  +     +   P+ + VG + V 
Sbjct: 556 SITSD---ADAYVQEVVAELKKAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVE 612

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++       +  SLE V    +  
Sbjct: 613 ERTVSVRRLGEKETKVESLENVTKALAAE 641


>gi|330752453|emb|CBL87403.1| threonyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 646

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 165/450 (36%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T    +  +G+  WLP G      +   +++ 
Sbjct: 226 KALKEHLALLEEAKKRDHRKLGKQLELFT-FSKKVGQGLPLWLPNGAALRSRLEDFLKKA 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIF 118
           Q + G   +S P +   +L+V SG Y+ YG++  +  +  + ++  +  P +     +I+
Sbjct: 285 QVKAGYEMVSTPHIGQKELYVTSGHYEKYGEDSFQPIETPKAEEEFLLKPMNCPHHCEIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                SY+ LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +
Sbjct: 345 NFKPYSYKELPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDSEFKNV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +F  LG ++   +                       +   S D  D    +   
Sbjct: 404 IDLVLYVFRSLGFENFTAQVSLRD-------------PKTPEKYIGSVDNWDKSEKAIIN 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +D      I     A Y    D   +              R  ++G I      Y+LP
Sbjct: 451 AAEDKGLDYVIETGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLP 497

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                T+KGAD + H  V +     G++    A++     G   +W   + P ++ ++ I
Sbjct: 498 ERFDLTYKGADNESHRPVMIHRAPFGSLERFVAILLEHTAGNFPLW---LMPQQVVILTI 554

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +      +K+   L         DD  E +G +   A++   P  +IVG +    +
Sbjct: 555 ---SENYEKYAQKVLNLLEINEIRGLIDDRSETMGKKIRDAEIKKIPYMIIVGEQEEKSA 611

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + ++        ++SLE  +       + 
Sbjct: 612 TLSVRQHGGEDLGNLSLEAFVKVVKAEINK 641


>gi|239826651|ref|YP_002949275.1| prolyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259511599|sp|C5D9C3|SYP_GEOSW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239806944|gb|ACS24009.1| prolyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 567

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAIELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEIITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S 
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYSD 225



 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 3/229 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E+    +   +   +       ++      +  +     +  +D+   +  D  P+ K  
Sbjct: 340 ESVTIVADHAVKAIVNGVCGANEEGYHYIGVNPERDFTISEYADLRFIQEGDPSPDGKGT 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIEVGH+F  GT+YS  M+AT+   +G+   + MG YGIG  R+VAA+ E   D 
Sbjct: 400 IRFARGIEVGHVFKLGTRYSKAMNATYLDENGRSQTMIMGCYGIGVSRLVAAIAEQFADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++WP SVAPF + LI++ A ++  R   ++ Y +L + G +V +DD  E+ G +FA +
Sbjct: 460 NGLVWPASVAPFHVHLISVNAKNEEQRQLADEWYEKLGQAGFEVLYDDRPERAGVKFADS 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           DL+G P++V VG +  ++  VEIK R TG   ++S++E+I+        
Sbjct: 520 DLIGIPIRVTVGKR-ANEGIVEIKVRQTGESMEVSVDELIDTIRRLLQQ 567


>gi|169632514|ref|YP_001706250.1| prolyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|226695258|sp|B0VRW9|SYP_ACIBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169151306|emb|CAP00010.1| prolyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 571

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRTSRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG  +LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPGLLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +YN M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYNVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFS 224



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K       GIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQITEVFDLRNVVEGDPSPDGKGTLQIKCGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|70728636|ref|YP_258385.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|114152231|sp|Q4KH98|SYP_PSEF5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68342935|gb|AAY90541.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 571

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   ++MG YGIG  RVVAA IE ++D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCEVLGENGKPVTLEMGCYGIGVSRVVAAAIEQNNDANGIIWSDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+Y+ L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 EQVREATDKLYSELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + + +V+++   R  
Sbjct: 544 EYKSRTEAEAQALPVADVLSFLQARIR 570


>gi|332558829|ref|ZP_08413151.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
 gi|332276541|gb|EGJ21856.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
          Length = 646

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 150/446 (33%), Gaps = 49/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    A    H+ + R      + + + G+  W P G +    +   +R   
Sbjct: 234 KAYLHMLEE----AAKRDHRKLGREMELFHLQEEAPGMVFWHPNGWQIYRTLEDYMRGRL 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            + G  E+  P +    LW  SG +++Y + M  +    + A         P +      
Sbjct: 290 RQAGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEHAKEKRINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++   +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +    
Sbjct: 350 VYNQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIF-CTEDQIESECA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   ++  LG  S  ++  + P     S E     +T                P E
Sbjct: 409 AFIELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIKKVGAAYEIDPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G  F       
Sbjct: 469 GAFYGPKLDFKLTD---------------------------AIGRKWQCGT-FQVDPNLP 500

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G DG K     +    +G+      ++  ++ GK   W   +AP ++ + +I
Sbjct: 501 TRLGAEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++ A L   G     D   E+I  +     +   P+ + +G + V   
Sbjct: 558 VSD---ADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEAR 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
            V ++       E M L++V++  + 
Sbjct: 615 SVSVRRLGETRTESMGLDQVVDQLAA 640


>gi|221639813|ref|YP_002526075.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|254783534|sp|B9KKC7|SYT_RHOSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221160594|gb|ACM01574.1| Threonyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 646

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 150/446 (33%), Gaps = 49/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    A    H+ + R      + + + G+  W P G +    +   +R   
Sbjct: 234 KAYLHMLEE----AAKRDHRKLGREMELFHLQEEAPGMVFWHPNGWQIYRTLEDYMRGRL 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            + G  E+  P +    LW  SG +++Y + M  +    + A         P +      
Sbjct: 290 RQAGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEHAKEKRINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++   +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +    
Sbjct: 350 VYNQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIF-CTEDQIESECA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   ++  LG  S  ++  + P     S E     +T                P E
Sbjct: 409 AFIELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIRKVGAAYEIDPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G  F       
Sbjct: 469 GAFYGPKLDFKLTD---------------------------AIGRKWQCGT-FQVDPNLP 500

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G DG K     +    +G+      ++  ++ GK   W   +AP ++ + +I
Sbjct: 501 TRLGAEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++ A L   G     D   E+I  +     +   P+ + +G + V   
Sbjct: 558 VSD---ADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEAR 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
            V ++       E M L++V++  + 
Sbjct: 615 SVSVRRLGETRTESMGLDQVVDQLAA 640


>gi|73662391|ref|YP_301172.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761534|sp|Q49YB4|SYT_STAS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72494906|dbj|BAE18227.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 645

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 171/448 (38%), Gaps = 39/448 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E   RD      +L L +   ++     G+  WLP G      +   I +++
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFSNNPLV---GAGLPLWLPNGATIRREIERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
              G   +  P + + DL+  SG +D Y ++M      ++ + M+  P +      I+ +
Sbjct: 286 VSMGYDHVYTPVMANVDLYKTSGHWDHYQEDMFPTMKLDEYEEMVLRPMNCPHHMMIYAN 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR LP    ++    R E      G+ R R   + DA+ F + P+  K  + ++  
Sbjct: 346 KPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDAHIF-VRPDQIKEEFKRVVN 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +++    ++   R                  D  + + +   D M     S   + 
Sbjct: 405 LIIDVYNDFNFENYSFRLSYR--------------DPEDKEKYFDDDEMWIKAESMLKEA 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + L+       A  A      + ++  ++ + + +S   ++    F    K+     
Sbjct: 451 VDELGLDYEEAIGEA--AFYGPKLDVQVQTAMGKEETLSTAQLD----FLLPQKF----E 500

Query: 300 ATFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ G DG+ H   +   G+ + M    A +     G    W   +AP ++ +I +    
Sbjct: 501 LTYIGNDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVEIIPVNV-- 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            +  D    I   L   G  V  DD  E++G +   A +   P Q++VG K V + +V +
Sbjct: 556 DLHYDYARLIQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQLVVGDKEVENKEVNV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   +  +E +  +E I          +
Sbjct: 616 RKYGSQDQETLEKDEFIWNLVDEIRLKK 643


>gi|226327022|ref|ZP_03802540.1| hypothetical protein PROPEN_00883 [Proteus penneri ATCC 35198]
 gi|225204240|gb|EEG86594.1| hypothetical protein PROPEN_00883 [Proteus penneri ATCC 35198]
          Length = 571

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y W+P G + L  +  I+REE
Sbjct: 1   MRTSHYLLSTLKETPADAEIVSHQLMLRAGMIRKLASGLYDWMPTGVRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+S+P +Q ADLW+ESGR++ YG E+LR +DR ++  + GPTHEEV+TDI R+
Sbjct: 61  MDNAGSLEISMPVVQPADLWLESGRWEQYGPELLRFSDRGERPFVLGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y++M+ +
Sbjct: 121 EITSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHISQESLQETYDRMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P+ A++G IGG+ SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFSRIGLDFRPVLADTGSIGGNASHEFQVLADSGEDDIVFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    D  P+ K      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWERDLPVAEIADIRNVVEGDQSPDGKGTLLIKRGIEVGHIFQLGTKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +  +G +  V MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQNEEGHNQIVTMGCYGIGITRIVAAAIEQNHDARGIIWPDAIAPFQVAILPMNMHR 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +++Y  L   G DV +DD  E+ G  FA  +L+G P  +++G + + ++++E
Sbjct: 486 SYRVKEVADRLYNELRAQGIDVLFDDRKERPGVMFADMELIGIPHTIVIGDRNLDNNQIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R +  +  +++++V+ +   + +
Sbjct: 546 YKARRSDDKSLVNVDDVVAFIKEQLA 571


>gi|327392821|dbj|BAK10243.1| Prolyl-tRNA synthetase ProS [Pantoea ananatis AJ13355]
          Length = 572

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRVADRHERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF+R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSQIFNRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS 224



 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 114/204 (55%), Gaps = 3/204 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSAT 301
               I  +   P A  +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M A+
Sbjct: 369 HYFGINWERDLPMAQVADLRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKAS 428

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-V 360
            +G DG++  + MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +       
Sbjct: 429 VQGEDGRNQIMTMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQKSFR 488

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++  E++Y  L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K 
Sbjct: 489 VKELAEELYNTLRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKA 548

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R  G ++ +  +E++ +  +  + 
Sbjct: 549 RRAGEKQMIKQDEIVEFLLNALNK 572


>gi|223984594|ref|ZP_03634721.1| hypothetical protein HOLDEFILI_02017 [Holdemania filiformis DSM
           12042]
 gi|223963441|gb|EEF67826.1| hypothetical protein HOLDEFILI_02017 [Holdemania filiformis DSM
           12042]
          Length = 590

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 158/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD +    +L L   M+ ++  G   +LP G    + +     EE  +
Sbjct: 181 QNYLNFLEEAKKRDHKKLGRELDLF--MMSEYGPGFPFFLPNGMILRNVLENYWYEEHTK 238

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + S DLW  SG + +Y   M      +D+     P +      ++++ + 
Sbjct: 239 EGYQFIKTPIMLSKDLWELSGHWANYQDNMYTTM-IDDREFAIKPMNCPGGILVYKNGLH 297

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    ++    R E      G+ R R F   DA+ F +  +  +    ++     
Sbjct: 298 SYKDLPLRIGELGQVHRHEASGALNGLFRVRTFTQDDAHIF-MREDQIESEVVRLINFID 356

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R++   GL    +   + P                E +   S +  D    +        
Sbjct: 357 RVYSVFGLSY-EIELSTRP----------------EKKYIGSIEIWDKAEAALEAACHAA 399

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    D H                R  + G I             T+
Sbjct: 400 GKACKINPGDGAFYGPKLDFHLTDSLG----------RVWQCGTI-QLDMNLPERFDLTY 448

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG K   + +     G++     ++   + G   +W   +AP ++ ++ +  H +  
Sbjct: 449 VDADGSKKRPIMLHRVIFGSIERFIGILIEHYAGAFPMW---LAPQQVVIVPV--HHERH 503

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++ A L   G  V  D   E++G +   A     P+Q++VG   V ++   ++  
Sbjct: 504 LDYAKELEAMLLAKGVRVKVDGRNEKLGYRVREAQTHKIPMQIVVGDGEVENNTATVRRY 563

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +S EE++    +     
Sbjct: 564 GKKDSVTLSKEELLESILNEIETK 587


>gi|293400866|ref|ZP_06645011.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305892|gb|EFE47136.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 577

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 156/444 (35%), Gaps = 44/444 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L +L+E    A+   HK + R     M+ +++ G+  +LP G    + +     EE  + 
Sbjct: 172 LHMLEE----AKKRDHKKLGREMGLFMMSEYAPGMPFFLPNGMIIRNLLENFWYEEHTKE 227

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
               +  P + S +LW  SG + +Y + M      +D+     P +      +F++ + S
Sbjct: 228 NYKFIKTPIMMSKELWEVSGHWANYKENMYTTMV-DDREFAIKPMNCPGSLLVFKNGLHS 286

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP    ++    R E      G+ R R F   DA+ F + P+  +    ++     R
Sbjct: 287 YKDLPLRMGELGQVHRHEASGALNGLFRVRTFTQDDAHIF-MRPDQIESEVKELINFIDR 345

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   GL    +   + P                E +        +    +         
Sbjct: 346 VYSIFGLSYR-IELSTRP----------------EKKYIGDLAIWEKSEKALADACVSAG 388

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D H +              R  + G I             T+ 
Sbjct: 389 KDYKVNPGDGAFYGPKLDFHIKDSLG----------REWQCGTI-QLDMNLPERFDLTYV 437

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +     G++     ++   + G    W   +AP ++ ++ +  H +   
Sbjct: 438 EKDGTKVRPVMLHRVIFGSIERFIGILIEHYAGHFPTW---LAPTQVMVVPV--HYERHA 492

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            A   I  +L  +G     D   E++G +   A L   P Q+++G   V  + V ++   
Sbjct: 493 QAANAINEKLLAMGFRSKSDARNEKLGYRIREAQLAKIPYQLVIGDGEVEANTVTVRRAQ 552

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +     M +EE I   S      R
Sbjct: 553 SKESVTMPVEEFIAKLSAEVKEKR 576


>gi|331016426|gb|EGH96482.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 544

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 4/181 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 E 417
           E
Sbjct: 544 E 544


>gi|194865182|ref|XP_001971302.1| GG14505 [Drosophila erecta]
 gi|190653085|gb|EDV50328.1| GG14505 [Drosophila erecta]
          Length = 458

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 218/464 (46%), Gaps = 44/464 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMLQAGGQKITLPILTPTGLWRKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD+  E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVCEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +   K        
Sbjct: 182 YSVVNAAYDRLFKQLEVPFVKVNAATGMMGGSVSHEYHYVSPVGEDNLLQCKSCGFA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F  G K
Sbjct: 239 -----------------------GNSEVVMAPANCPSCSSSDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTKGKPQSLVMGCYGIGITRVIAAALEVLSSDNELHWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +   +A       L  VG      ++  DD  E  IG +   A  LG PL ++VG
Sbjct: 336 PKQGSKEQPEAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVG 395

Query: 408 SKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K +     K+E+     G   ++ L E +   +      + ++
Sbjct: 396 AKAIRQDSPKLEVHT-SKGETLELDLSETLKLVAEHSQYKKSLI 438


>gi|291616370|ref|YP_003519112.1| ProS [Pantoea ananatis LMG 20103]
 gi|291151400|gb|ADD75984.1| ProS [Pantoea ananatis LMG 20103]
          Length = 572

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRVADRHERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF+R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSQIFNRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS 224



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 114/204 (55%), Gaps = 3/204 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSAT 301
               I  +   P A  +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M A+
Sbjct: 369 HYFGINWERDLPMAQVADLRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKAS 428

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-V 360
            +G DG++  + MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +       
Sbjct: 429 VQGEDGRNQIMTMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQKSFR 488

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++  E++Y  L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K 
Sbjct: 489 VKELAEELYNTLRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKA 548

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R  G ++ +  +E++ +  +  + 
Sbjct: 549 RRAGEKQMIKQDEIVEFLLNALNK 572


>gi|289628621|ref|ZP_06461575.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651507|ref|ZP_06482850.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868600|gb|EGH03309.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 571

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225



 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVSDVLSFIQGKVN 570


>gi|332878463|ref|ZP_08446184.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683558|gb|EGJ56434.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 647

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 161/450 (35%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G      +   +++ 
Sbjct: 227 KMLDEYLTLLEEAKKRDHRKIGKEMELFM-FSERVGKGLPMWLPKGTALRLRLEDFLKKI 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  ++  P +   +L+V SG Y  YGK+  +       D+  +  P +     +I+
Sbjct: 286 QKRYGYQQVMTPHIGGKNLYVTSGHYAHYGKDSFQPIHTPEADEEYMLKPMNCPHHCEIY 345

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    +R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 346 AWKPRSYKDLPLRIAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFIRV 404

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 IF  L   +   +                  D    + +      D        
Sbjct: 405 MEIIQIIFGALNFDTFEAQISLR--------------DPNNREKYIGS---DEVWEEAEN 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +      +  +     AA      +         K    R  ++G I      Y+LP
Sbjct: 448 AIIEACKEKGLNAKVEYGEAAFYGPKLDF------MVKDALGRRWQLGTI---QVDYNLP 498

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G D + H  V +     G+M    AV+     G   +W   + P +++++ I
Sbjct: 499 ERFKLEYTGEDNQKHRPVMIHRAPFGSMERFCAVLIEHTAGHFPLW---LTPDQVAILPI 555

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  +K+ A   +       DD  E+IG +    ++   P  +IVG K  +D 
Sbjct: 556 ---SEKFNDYAQKLCAYFDEQDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAADG 612

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ +  G +  M  E+     +    N
Sbjct: 613 TVSVRKQGEGDQGSMKFEDFAKKINEEVRN 642


>gi|271501814|ref|YP_003334840.1| prolyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270345369|gb|ACZ78134.1| prolyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 572

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YGKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVFS 224



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 113/204 (55%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  +
Sbjct: 366 DGKHYFGINWERDITLPQIADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQTLTMGCYGIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SFRVQEVAEGIYQQLRANGIDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            KHR  G +E +   +++ +   +
Sbjct: 546 YKHRRKGEKEMIKAGDIVEFLLSQ 569


>gi|126658692|ref|ZP_01729837.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
 gi|126619954|gb|EAZ90678.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
          Length = 642

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 89/443 (20%), Positives = 161/443 (36%), Gaps = 41/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L   +E  R D      +L L +  I +    G+  W P G      +    R+     
Sbjct: 234 YLKQQEEAKRRDHRKLGKELKLFS--IQEGAGGGLVFWHPRGATMRYIIEDYWRKAHLDG 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + +LW  SG +D Y + M    D  ++A    P +       +++ + S
Sbjct: 292 GYELLYTPHVANLELWKTSGHFDFYRENMFDSMDIEEQAYQIKPMNCPFHVLTYKNDLHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F L P         +     +
Sbjct: 352 YREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCL-PTQIAAEILGVLNLTEK 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K   +   + P     + E   LA     +   SK +                
Sbjct: 411 ILSDFGFKDYEVNLSTRPEKSVGTDEGWELATQALVEALNSKSWEYIEDKGGG------- 463

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++       + 
Sbjct: 464 -------------AFYGPKIDIKIKDAIGRTWQCSTIQVD----FNLPERF----DMEYV 502

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG +   + +     G++     ++  ++ G   +W   +AP ++ L+ +    +  R
Sbjct: 503 AADGSRQRPIMIHRAIFGSLERFYGILIENYAGDFPLW---LAPIQLRLLPV---SEAQR 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E + A L + G  V  D  GE++G Q   A+L   P+  IVG+K V    + I+ R 
Sbjct: 557 EYGETVVATLKEAGYRVEIDCTGERLGKQIRKAELEKIPVVAIVGNKEVETQSLSIRTRQ 616

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    M L E+        +N 
Sbjct: 617 QGDIGTMDLTELKKSLDDAIANK 639


>gi|126462800|ref|YP_001043914.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|166225489|sp|A3PLC6|SYT_RHOS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126104464|gb|ABN77142.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 646

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 150/446 (33%), Gaps = 49/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    A    H+ + R      + + + G+  W P G +    +   +R   
Sbjct: 234 KAYLHMLEE----AAKRDHRKLGREMELFHLQEEAPGMVFWHPNGWQIYRTLEDYMRGRL 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            + G  E+  P +    LW  SG +++Y + M  +    + A         P +      
Sbjct: 290 RQAGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEHAKEKRINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++   +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +    
Sbjct: 350 VYNQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIF-CTEDQIESECA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   ++  LG  S  ++  + P     S E     +T                P E
Sbjct: 409 AFIELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIRKVGAAYEIDPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G  F       
Sbjct: 469 GAFYGPKLDFKLTD---------------------------AIGRKWQCGT-FQVDPNLP 500

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G DG K     +    +G+      ++  ++ GK   W   +AP ++ + +I
Sbjct: 501 TRLGAEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++ A L   G     D   E+I  +     +   P+ + +G + V   
Sbjct: 558 VSD---ADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEAR 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
            V ++       E M L++V++  + 
Sbjct: 615 SVSVRRLGETRTESMGLDQVVDQLAA 640


>gi|71736091|ref|YP_275923.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257487021|ref|ZP_05641062.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298488219|ref|ZP_07006255.1| Prolyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|114152230|sp|Q48FB4|SYP_PSE14 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71556644|gb|AAZ35855.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157277|gb|EFH98361.1| Prolyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320323063|gb|EFW79152.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329665|gb|EFW85654.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330892229|gb|EGH24890.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020]
 gi|330988958|gb|EGH87061.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009335|gb|EGH89391.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 571

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225



 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|307150016|ref|YP_003885400.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306980244|gb|ADN12125.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 608

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 174/452 (38%), Gaps = 48/452 (10%)

Query: 8   LPILQENPRDAEIASHKLMLR--TGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   +    +A    H+ + R     I       G+  W P G      +   +++EQ +
Sbjct: 188 LAEYKRRKEEALKRDHRKLGRELGLFIFSDVVGPGLPLWTPKGTIIRTTLEEFLKKEQVK 247

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDI 117
            G + +  P L   DL+  SG + +Y ++M  +   ++++       +  P +      I
Sbjct: 248 RGYLPVVTPHLARVDLFKISGHWQNYKEDMFPMMAEDEESALHEIGFVLKPMNCPFHIQI 307

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++S ++SYR+LP    +    +R E     G + R R F + D++ F +TPE  +  +  
Sbjct: 308 YKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLEEEFLS 366

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F  L LK+   R        D       + +  E  +  +            
Sbjct: 367 VVDLILSVFKSLQLKNFKARLSFRDPASDKYIGGDDVWNKAENAIRSA------------ 414

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                +  +N    +     A      +    D+         R  ++G +      Y+L
Sbjct: 415 -----VQKMNMEHFEAPGEAAFYGPKLDFIFQDA-------LEREWQLGTV---QVDYNL 459

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +   DG +   V +     G++  +  ++   + G   +W   +AP ++ L+ 
Sbjct: 460 PERFDLEYVAEDGSRKRPVMIHRAPFGSLERLVGILIEEYAGDFPLW---LAPIQVRLLP 516

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        D  +++ A+L   G     D  GE++G     A+    P+  +VG+K V  
Sbjct: 517 V---SDPQLDFAKEVAAQLLSQGIRAEADTSGERLGKMIRNAEKQKIPVMAVVGAKEVES 573

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + + I+ R +G    +++ EVI   +   +N+
Sbjct: 574 NTLSIRTRASGELGTIAVSEVIEKVTEAITNH 605


>gi|78222566|ref|YP_384313.1| prolyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|114152198|sp|Q39VY6|SYP_GEOMG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78193821|gb|ABB31588.1| Prolyl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 570

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 166/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVVSHKLMLRAGMIRKLAAGIYNYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P++Q A+LW ES R++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPSVQPAELWQESKRWEQYGKELLRFKDRKDAEFCLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD++ E +  SY+KM+ +
Sbjct: 121 EVKSYRQLPLNLYQVQSKFRDEIRPRFGLMRGREFIMKDAYSFDVSSEAADTSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +          
Sbjct: 181 YRRIFQRCGLKFRAVEADTGSIGGSSSHEFMVLADSGEDAIVSCTACEYAA 231



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 109/202 (53%), Gaps = 3/202 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSA 300
              ++        A  +D+ N    D  P          RGIEVGH+F  GTKYS  + A
Sbjct: 363 HFKNVNIGRDFTPALIADIRNVVHGDPCPRCEAGHLEMWRGIEVGHVFKLGTKYSESLRA 422

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF  ADGK+  + MG YGIG  R VAA IE +HD  GII+P  +APF   +  +   D  
Sbjct: 423 TFLDADGKEQVIFMGCYGIGISRTVAACIEQNHDADGIIFPIPIAPFHCIISAVSTKDAE 482

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+++Y  L+ VG +V +DD  E+ GS+F  ADL+G PL+++VGSK +++ KVE+K 
Sbjct: 483 VVAACDELYRALTAVGVEVLFDDRDERPGSKFKDADLIGIPLRIVVGSKNLAEGKVELKS 542

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R  G    + L E +       
Sbjct: 543 RKGGEVSLLPLAEAVETVKGLV 564


>gi|77463957|ref|YP_353461.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides 2.4.1]
 gi|123757748|sp|Q3J0X4|SYT_RHOS4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77388375|gb|ABA79560.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 646

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 150/446 (33%), Gaps = 49/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    A    H+ + R      + + + G+  W P G +    +   +R   
Sbjct: 234 KAYLHMLEE----AAKRDHRKLGREMELFHLQEEAPGMVFWHPNGWQIYRTLEDYMRGRL 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            + G  E+  P +    LW  SG +++Y + M  +    + A         P +      
Sbjct: 290 RQAGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEHAKEKRINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++   +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +    
Sbjct: 350 VYNQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIF-CTEDQIESECA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   ++  LG  S  ++  + P     S E     +T                P E
Sbjct: 409 AFIELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIRKVGAAYEIDPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G  F       
Sbjct: 469 GAFYGPKLDFKLTD---------------------------AIGRKWQCGT-FQVDPNLP 500

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G DG K     +    +G+      ++  ++ GK   W   +AP ++ + +I
Sbjct: 501 TRLGAEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++ A L   G     D   E+I  +     +   P+ + +G + V   
Sbjct: 558 VSD---ADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEAR 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
            V ++       E M L++V++  + 
Sbjct: 615 SVSVRRLGETRTESMGLDQVVDQLAA 640


>gi|242242946|ref|ZP_04797391.1| threonyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233547|gb|EES35859.1| threonyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 645

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M        D+AM+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +    R                  D  +   +   D M     S   +  D
Sbjct: 407 QDVYKDFGFEDYRFRLSYR--------------DPEDKHKYFDDDEMWEKAESMLKEASD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 ELG--LTYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----DLT 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPMQVEIIPVNV--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L   G  V  DD  E++G +   A +   P Q++VG K V + +V ++ 
Sbjct: 558 HYDYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDKEVENQEVNVRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSEKQESVEKDEFIWNVIDEIRLKK 643


>gi|308185763|ref|YP_003929894.1| Prolyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308056273|gb|ADO08445.1| Prolyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 572

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAVEILMPVVQPADLWQESGRWEEYGPELLRIADRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSQIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS 224



 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A+ +D+ N    D  P+ K      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWERDLPLASVADIRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +    
Sbjct: 426 KASVQGEDGRNQVMSMGCYGIGITRVVAAAIEQNHDDRGIIWPDALAPFEVAILPMNMQK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SFRVKELAEELYATLRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R  G ++ +  +E++++     + 
Sbjct: 546 YKSRRAGEKQMIKQDEIVDFLLKALNK 572


>gi|284008500|emb|CBA75007.1| prolyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 571

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHKLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGAIEISMPIVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    +  + +Y+ M+ +
Sbjct: 121 EVTSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTDQDSLQQTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+G     ++A++G IGG+ SHEF VLAD+GE  +  S
Sbjct: 181 YSAIFTRIGFNFRAVQADTGSIGGNASHEFQVLADSGEDNIVFS 224



 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  Q         D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DHKHYFGINWQRDLSLPEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +  DG +  V MG YGIG  R+VAA IE SHD KGIIWPD++APF+++++ +  H 
Sbjct: 426 KASVQNEDGHNQTVTMGCYGIGVTRIVAAAIEQSHDDKGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + + +++VE
Sbjct: 486 SYRVKEVAERLYRDLQAKGIDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNNQVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R    +E +++  ++++   + +
Sbjct: 546 YKQRRNNEKEYINIAGIVDFLHTKLN 571


>gi|283779278|ref|YP_003370033.1| threonyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283437731|gb|ADB16173.1| threonyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 666

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 159/452 (35%), Gaps = 56/452 (12%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            I +   RD  +   +L L T  I+     G+  WLP G      + + +REE  R G  
Sbjct: 237 KIEEAKRRDHRLLGKQLDLFT--INPLVGSGLILWLPKGATIRGLLESFVREELIRRGYQ 294

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            +  P +   DL+  SG +  Y   M      + ++  +  P +      I++S  +SYR
Sbjct: 295 TVYTPHIGKVDLYRTSGHFPYYADSMFPPFVTKEEEEYLLKPMNCPHHIMIYKSKPRSYR 354

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +     R E   +  G+ R R F   DA+ F  T E     +         + 
Sbjct: 355 ELPLRLAEFGTVHRYEKSGQLSGMTRVRGFTQDDAHIF-CTDEQVPGEFEGCIEMTQFVL 413

Query: 186 HRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             LGL +  +R        D    S E    A     +V C++  +++        F   
Sbjct: 414 KSLGLDNYRVRLGFRDPKSDKYVGSEELWNRAQGALVEV-CTRLGIEYTAEEGEAAFYGP 472

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP-- 297
            +   + +                                 +G  +  GT    Y+LP  
Sbjct: 473 KADFVVTDC--------------------------------IGREWQLGTVQLDYNLPSA 500

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + GAD K H  V +    +G+M     V+     G   +W   +AP +  ++ +
Sbjct: 501 ERFDLEYVGADNKIHRPVMIHRAPLGSMERFIGVLIEHFAGAFPLW---LAPEQARVVTV 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +       ++  +L   G  V  D   E++G++   A L   P   +VG +     
Sbjct: 558 SEKSEA---YGREVEEKLRSAGFRVSGDYRSEKLGAKIRDAQLELIPYMFVVGPRDAEQG 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V ++ RL G    +SL + +   S   +  +
Sbjct: 615 TVSLRDRLDGDLGALSLADAMQRLSDEVAERK 646


>gi|91070150|gb|ABE11072.1| threonyl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           HF10-11A3]
          Length = 638

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 159/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  ++E    AE   H+ + +      I + S G+  W P G      +   IR
Sbjct: 226 KELKDYLTRIEE----AEKRDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
               +   +E+  P      LW +SG ++ +  +M   A  N +     P +      +F
Sbjct: 282 GILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTASEN-RTYAIKPMNCPCHIQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +  
Sbjct: 341 NQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIF-CTEEQIQEEVSTF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   I ++  + P     S E    ++   ++   +K+      P E  
Sbjct: 400 IDLVFEVYKTFGFDEIIIKLSTRPQKRVGSEEIWDKSEEALSKALDNKNLKWELQPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            K    R  + G I      +S+P
Sbjct: 460 FYGPKIEFSL---------------------------KDCLNRVWQCGTI---QVDFSMP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   +  K + V +    +G+      ++   ++ K  IW   +AP++I L++I
Sbjct: 490 IRLDATYVDINNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIW---IAPYQIILLSI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +    D C K    L+  G     D   E+IG +   A L   PL  ++G K     
Sbjct: 547 TDRN---IDKCLKFNELLNNNGYRSKVDIRNEKIGYKIREATLKRVPLIAVIGDKEEEID 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + ++          +L  +           
Sbjct: 604 SIALRALNGRNLGIFNLPNLYKLMDELIDKK 634


>gi|307544897|ref|YP_003897376.1| prolyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307216921|emb|CBV42191.1| prolyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 573

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DA+I SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASQLLIATLKETPADADIVSHQLMLRAGMIRRLNAGLYTWLPLGLRTLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR+D YG  +LR+ DR+D+   YGPTHEEV+TD+ R+
Sbjct: 61  MNRAGAQEVLMPAIQPAELWQESGRWDQYGNLLLRIRDRHDRDFCYGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSFD+   G + SY+ M+ +
Sbjct: 121 ELRSYKQVPSNFYQIQTKFRDETRPRFGVMRAREFIMKDAYSFDVDQAGLQRSYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF VLAD+GE  V  S
Sbjct: 181 YVRIFTRLGLDFRAVEADNGDIGGSGSHEFQVLADSGEDAVVFS 224



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ +     ARGIEVGH+F  GTKYS  M
Sbjct: 367 DGKHYFGINWERDVALPKVADLRNVVEGDPSPDGQGTLSIARGIEVGHVFQLGTKYSTAM 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +G+   + MG YGIG  RVVAA IE +HD  GIIWPD++APF ++L+ + AH 
Sbjct: 427 NATVLDDNGQAVPLLMGCYGIGVTRVVAAAIEQNHDDAGIIWPDAIAPFNVALVPMNAHK 486

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q  RD  E++Y  LS  G DV  DD   + G +FA  +L+G P ++++G + +   ++E
Sbjct: 487 SQRVRDESERLYQALSDAGLDVLLDDRDLRPGVRFADQELMGIPHRIVIGDRSLDKGELE 546

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K R       + +++VI +   + 
Sbjct: 547 YKGRRDSEATMIPIDDVIAFLREKI 571


>gi|330994118|ref|ZP_08318046.1| Threonyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329758585|gb|EGG75101.1| Threonyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 644

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 157/448 (35%), Gaps = 49/448 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE   H+ + R      I + + G   W P G +    +   +R
Sbjct: 227 KELEAHLHQLEE----AERRDHRRIGREMDLFHIQEEAVGQIFWHPKGWRLYSVLQDYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDI 117
             Q+R G  E+  P L    LW  SG +D Y + M     +  DK +   P +      I
Sbjct: 283 RAQDRNGYQEVRTPQLVDRALWEASGHWDKYREHMFIATVEDEDKTLALKPMNCPCHVQI 342

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR  ++SYR LP    +     R E      G+MR R F   DA+ F  T +       +
Sbjct: 343 FRHGLRSYRELPLRMAEFGACHRYEPSGALHGIMRVRGFTQDDAHIF-CTEDQIADETAR 401

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  ++  LG +   ++    P            A+                 P E 
Sbjct: 402 FVRMLADVYQDLGFEHFRVKFADRPEQRAGDDATWDRAENALKVACDMAGVTYEHNPGEG 461

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   +                               +    R  + G        Y L
Sbjct: 462 AFYGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDYVL 491

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  + A++ G D   H  V +    +G+      ++   H G+  +W   +AP ++ + +
Sbjct: 492 PERLDASYVGEDSARHRPVMLHRAILGSFERFLGILIEQHAGRFPLW---LAPVQVVVAS 548

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D  +++  RL   G  V  D   E+I ++     L   P+ ++VG K   +
Sbjct: 549 IVTD---AADYAQQVADRLRAAGLVVEADLRNEKINAKIREHSLARVPVILVVGRKEAEE 605

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
           + V ++      +E + L+E ++  ++ 
Sbjct: 606 NTVAMRRLGGKAQEVLPLDEAVSALAYE 633


>gi|253577580|ref|ZP_04854892.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843049|gb|EES71085.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 645

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 172/450 (38%), Gaps = 37/450 (8%)

Query: 1   MRRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           M+++     L +L+E   RD      +L + T   +   +G+  WLP G      +   I
Sbjct: 226 MKKADLDHHLHMLEEAKKRDHRKLGKELNIFT-FNNLVGQGLPIWLPKGATVRRTLERYI 284

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
            + + R G   +  P L + DL+  SG ++ Y ++M      + +  +  P +      +
Sbjct: 285 VDIEERLGYQHVYTPVLGNVDLYKTSGHWEHYQEDMFPKMAIDTEEFVLRPMNCPHHMMV 344

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++S ++SYR+LP    ++ ++ R E+     G+ R R   + DA+ F    +  K  + +
Sbjct: 345 YKSDMRSYRDLPIRIAELGMQHRYEMSGALTGLHRVRSMTLNDAHIF-CRLDQIKDEFKR 403

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +     ++++  G+     R                  D  +T+ +   D M        
Sbjct: 404 VLDLIKQVYNDFGIHEYRFRLSYR--------------DPQDTEKYYQNDEMWNTAQRML 449

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +  +         +     A      + ++  +L + + +S   I+    F    ++  
Sbjct: 450 REVVEEAG--LPFFEAEGEAAFYGPKLDVQIKTALGKEETLSTVQID----FLLPERF-- 501

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + G DG+ H  V +    +G M    A +  +  G   +W   +AP +  ++ + 
Sbjct: 502 --ELEYVGDDGQKHRPVVLHRGILGTMERFTAFLLENFAGNLPLW---LAPVQAKVLPVS 556

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           ++         ++  +L   G     D   E++G +   A L   P  ++VG    +   
Sbjct: 557 SN---FDAYARQVEDKLRAAGIRAESDLRNEKLGYKIREAQLEKLPYMLVVGENEQNAGT 613

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R  G     +++EVI        N+
Sbjct: 614 VSVRKRGQGDLGAKAVDEVIAQLQEEIRNH 643


>gi|319400998|gb|EFV89217.1| threonyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 645

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M        D+AM+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +    R                  D  +   +   D M     S   +  D
Sbjct: 407 QDVYKDFGFEDYRFRLSYR--------------DPEDKHKYFDDDEMWEKAESMLKEASD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 ELG--LTYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----DLT 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPMQVEIIPVNV--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L   G  V  DD  E++G +   A +   P Q++VG K V + +V ++ 
Sbjct: 558 HYDYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDKEVENQEVNVRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSEKQESVEKDEFIWNVIDEIRLKK 643


>gi|183597570|ref|ZP_02959063.1| hypothetical protein PROSTU_00851 [Providencia stuartii ATCC 25827]
 gi|188023065|gb|EDU61105.1| hypothetical protein PROSTU_00851 [Providencia stuartii ATCC 25827]
          Length = 575

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G+IE+S+P +Q ADLW ESGR++ YG E+LR ADR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGSIEVSLPVVQPADLWQESGRWEQYGPELLRFADRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGIMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+G     ++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSKIFTRIGFDFRAVQADTGSIGGSASHEFQVLAQSGEDDIVFS 224



 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +       T D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLAQPETFDLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +  +G +  V MG YGIG  R+VAA IE SHD +GIIWPD++APF ++++ +  H 
Sbjct: 426 KASVQNEEGHNQIVTMGCYGIGVTRIVAAAIEQSHDERGIIWPDAIAPFHVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + + +++VE
Sbjct: 486 SYRVKEVAEKLYADLKAQGIDVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDNNQVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R    +  + L+ V+++   + +N
Sbjct: 546 YKARRNDEKALIGLDNVVSFLKEKLAN 572


>gi|297568238|ref|YP_003689582.1| prolyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924153|gb|ADH84963.1| prolyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 576

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR G I + + G+YS+LPLG  A+  V  I+REE
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRGGFIRKLTAGVYSYLPLGLAAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFKDRHQRESCLGPTHEEVITDLVRM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFDL   G++ +Y KM+ +
Sbjct: 121 NIHSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDGYSFDLDEAGAELTYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +      
Sbjct: 181 YQRIFSRCGLAFRAVEADTGTIGGSFSHEFMVLAATGEDVVVICQHCDYAA 231



 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 99/180 (55%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE         +    RGIEVGHIF  GT YS  ++ATF    G+  +  MG +GIG  R
Sbjct: 386 NEDDRCPRCGGRLALTRGIEVGHIFKLGTNYSEALNATFLDDQGQSRHFVMGCFGIGVSR 445

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA IE +HD  G+I+P  +APF++ L+N+   D+V     E++Y  L+  G +V  DD
Sbjct: 446 TVAAAIEQNHDRDGMIFPLPIAPFQVILLNLTPKDEVISAEAERLYQALTADGIEVLLDD 505

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ GS+F  ADL+G P++++VG +F +D  +EI+ R  G   + +            +
Sbjct: 506 RDERPGSKFKDADLIGIPIRLMVGKRFKNDGLLEIRTRADGQTSEATPAAAEAVIKEMVA 565


>gi|258644607|dbj|BAI39857.1| putative threonyl-tRNA synthetase [Oryza sativa Indica Group]
          Length = 749

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 167/449 (37%), Gaps = 43/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 340 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 395

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y + M    +   +     P +      +F
Sbjct: 396 QQYRDRGYQEVLSPNIYNMQLWETSGHAANYKENMFVF-EIEKQEFGLKPMNCPGHCLMF 454

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +
Sbjct: 455 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRESQIKDEVKAV 513

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P       E    A+   T+              +  
Sbjct: 514 LDFINYVYEIFGFKY-ELELSTRPEKYLGDIETWNKAEQQLTEALNEFGKPWQINEGDG- 571

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  +FD+L    + +   ++    F    ++ L 
Sbjct: 572 -------------------AFYGPKIDIGVFDALKRKFQCATLQLD----FQLPLRFKLT 608

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +     +  V +    +G++  + A++   ++GK   WP  ++P +  + +I ++
Sbjct: 609 YSA--EDEAKLERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSISSN 663

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V 
Sbjct: 664 S---VEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVS 720

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R       +S++++I       +  +
Sbjct: 721 VRVRDKAELATVSIDDIITRFKEEVAAYK 749


>gi|254483545|ref|ZP_05096771.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214036202|gb|EEB76883.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 580

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S + +   +E P DAE+ SH+LMLR G+I + + G+YSWLPLG + L  V  ++REE
Sbjct: 11  MRTSNFLIATQKETPADAEVISHQLMLRAGLIRKLAAGLYSWLPLGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+S+P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 71  MNAAGAQEVSMPVVQPAELWQESGRWEQYGSELLRIQDRHQRDFCLGPTHEEVITDLIRN 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K RDE+RPRFG+MRSREFLMKDAYSF  +    + +Y  M  +
Sbjct: 131 EVKSYKQLPLNMYQIQTKVRDEIRPRFGIMRSREFLMKDAYSFHASQASLEDTYQIMHGA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y ++F RLGL   P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 191 YTKVFTRLGLDFRPVIADTGSIGGSASHEFHVLANSGEDDIAFSD 235



 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 3/238 (1%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F  L   G                       D + L  +      P +  +D+      D
Sbjct: 343 FGSLGPVGLDIDVIVDRSAAVLANFTCGANRDELHLIGVNWDRDCPLSQVADLREVVEGD 402

Query: 270 SLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           + P+ K      RGIEVGHIF  GTKYS  M A     +GK+  + MG YGIG  RVVAA
Sbjct: 403 ASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKAEVLNENGKNVTMTMGCYGIGVSRVVAA 462

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            IE +HD KGIIWP+++APF+++++ +     +   +  E +YA L  VG DV  DD  E
Sbjct: 463 AIEQNHDDKGIIWPEAMAPFQLAIVPLNMQKSEAVANCAEALYANLQSVGVDVLLDDRNE 522

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + G +FA  +L+G P ++++G + +++ ++E K R     + +  E+++++   +  +
Sbjct: 523 RPGVKFADMELIGIPHRIVIGDRALAEGQIEYKGRRDEDSQLIPQEDIVSFLQEQLRS 580


>gi|328543265|ref|YP_004303374.1| Threonyl-tRNA synthetase [polymorphum gilvum SL003B-26A1]
 gi|326413011|gb|ADZ70074.1| Threonyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 654

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 151/439 (34%), Gaps = 48/439 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + R        +   G+  W   G     ++ A +R   
Sbjct: 230 KAYLHMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHAKGWSLFQSLVAYMRRRL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTD 116
                 E++ P +    LW  SG +  Y + M  +        + +     P +      
Sbjct: 286 -AADYDEVNAPQILDTSLWETSGHWGWYKENMFAVQCADTEAEDTRLFALKPMNCPGHVQ 344

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       
Sbjct: 345 IFKHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEEQLAAECL 403

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L ++   G + I ++  + P     S      A+   T+V              
Sbjct: 404 KINDLILSVYQDFGFEEIVVKLSTRPEKRVGSDALWDHAEEVMTRVLKQ----------- 452

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +  S   I         A      E         +    R  + G        ++
Sbjct: 453 ----IEDQSGGRIKTGILPGEGAFYGPKFEYTL------RDAIGREWQCGTT---QVDFN 499

Query: 296 LP--MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP    A +   DG+     M      G+M     ++  +  G   +W   +AP ++ + 
Sbjct: 500 LPERFGAFYVDKDGEKKTPVMVHRAICGSMERFLGILIENFAGHFPLW---LAPRQVVVA 556

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I +      D  ++++A L+K G     D   E+I  +     L   P+ ++ G +   
Sbjct: 557 TITS---EADDYAKEVHAALTKAGLRADLDLRNEKINYKVREHSLAKTPVILVCGKREAE 613

Query: 413 DSKVEIKHRLTGIREDMSL 431
           +  V ++      +  M L
Sbjct: 614 ERTVNVRRLGKADQVAMGL 632


>gi|332704074|ref|ZP_08424162.1| Prolyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554223|gb|EGJ51267.1| Prolyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
          Length = 576

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++LP L+E P DAE+ SHKL+LR G+I Q + GIY++LP+G +AL+ V  I+R+E
Sbjct: 1   MRLSRFYLPTLKEVPADAEVVSHKLLLRAGLIRQLTSGIYTYLPMGLRALNKVADIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW E+GR++ YGKE+LR  DR D     GPTHEEV+T++ R 
Sbjct: 61  MDRAGAQEILMPMVQPAELWKETGRWEFYGKELLRFKDRKDSDYCLGPTHEEVVTNLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   EG+  SY  M+ +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDEEGANKSYWSMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF RLGLK   + A+SG IGG  SHEF+VLA TGE  +   ++     
Sbjct: 181 YAQIFRRLGLKFKAVEADSGAIGGSFSHEFMVLAATGEDTIATCQECEWAA 231



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 2/180 (1%)

Query: 263 HNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 D  P   +     RGIEVGH+F  G KYS  M ATF   +GKD  + MG YGIG
Sbjct: 383 RTITHEDVCPRCGKGVSLTRGIEVGHVFKLGYKYSKAMHATFLDENGKDQTMVMGCYGIG 442

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++A+ IE +HD  GII+P S+AP++ +LI++            ++Y  L   G +V 
Sbjct: 443 VSRIIASAIEQNHDDGGIIFPPSIAPYEAALISLGKSGDAVNAKAAELYESLRAEGIEVL 502

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +DD  E+ G +F  ADL+G+P+Q+++G K +    VE K R TG + ++ LE+       
Sbjct: 503 FDDREERPGVKFKDADLVGYPMQIVLGGKGLERGVVEAKDRRTGEKAELPLEDFTKAFKA 562


>gi|326803832|ref|YP_004321650.1| threonine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651446|gb|AEA01629.1| threonine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 651

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 163/442 (36%), Gaps = 37/442 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD      +L L   MI  +  +G+  WLP G      V   I +++ + G  
Sbjct: 238 RREEAKERDHRKIGKELDLF--MIDPKTGQGLPFWLPNGATIRRQVERYIVDKEVQAGYQ 295

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            +  P +   DL+  SG +D Y  +M    D  + ++ +  P +      ++++ + SYR
Sbjct: 296 HVYTPIMADVDLYKTSGHWDHYSDDMFPTMDFEDGESFVLRPMNCPHHIRVYQNKVHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D++ F +  +  K  +  +       +
Sbjct: 356 ELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDSHIF-VRLDQIKDEFKSILRFMQDAY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           H   +     R                  D  +T+ +   D M     S   +  D + L
Sbjct: 415 HDFNITDYRYRLSYR--------------DPKDTKKYFDDDEMWEKAQSMLKEAMDELGL 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L   + +S   ++    F    K+      T+ G 
Sbjct: 461 D--YFEAEGEAAFYGPKLDVQVKTALGNEETLSTIQLD----FLLPEKF----DVTYVGE 510

Query: 306 DGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           DG++    V +    +  M    A +   + G    W   +AP +  LI +  +     D
Sbjct: 511 DGQNTHRPVMIHRGIVSTMERFVAYLIEEYKGAFPTW---LAPQQAILIPVNENQHA--D 565

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  R+   G  +  DD  E++G +   A     P Q++ G   + +  V ++   +
Sbjct: 566 YVYQVANRMRSEGLRIEVDDRNEKMGYKIREAQTRKVPYQLVFGDNEIENGTVTVRRYGS 625

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E + L+E IN       + 
Sbjct: 626 KKTETVDLDEFINMIHAEIDSY 647


>gi|313672947|ref|YP_004051058.1| prolyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939703|gb|ADR18895.1| prolyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 572

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 128/265 (48%), Positives = 171/265 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+ENP DAE+ SHKLM+R GMI + + GIY++LP+G + +  V  IIR+ 
Sbjct: 1   MRLSKYFVPTLRENPSDAEVVSHKLMVRAGMIRKVAAGIYNYLPMGLRVIRKVENIIRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +  A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TDI R+
Sbjct: 61  MNEAGAIEILMPAVVPAELWKESGRWNVYGKELLRFKDRHDRDFCMGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  EG++ SY  M  +
Sbjct: 121 EIKSYKDLPVNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDVDDEGAEKSYGLMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF   GLK   + A+SG IGG+ SHEF+V A+TGE  V             +    D
Sbjct: 181 YCKIFESCGLKYKVVEADSGAIGGNFSHEFMVTAETGEDFVISCDSCDYAANVEKAPVID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           +    + + +              E
Sbjct: 241 NFEEDDEVEKPIEKIETKNQKTVEE 265



 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 129/267 (48%), Gaps = 13/267 (4%)

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F         ++A +GP+G        V       +++               +  DI  
Sbjct: 313 FVEFATPEEIVKATNGPLGFSGPIGINV-------KIYADNAVKKLKNYVVGGNEKDIHL 365

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATF 302
           +N +         A SD  N K  D  P+        +GIEVGHIF  GTKYS  M+AT+
Sbjct: 366 IN-VNHTRDFKVTAFSDFINAKPGDKCPKCGGTYVITKGIEVGHIFKLGTKYSKSMNATY 424

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              DGK  Y+ MG YGIG  R  AA IE +HD KGIIWP  +APF++ +I I   D+   
Sbjct: 425 LDKDGKQQYIVMGCYGIGVGRTAAAAIEQNHDEKGIIWPIQIAPFEVVIIPINTDDEDVV 484

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E +Y +L K   +V  DD  E+ G +F  ADL+G+P++V +G K + + +VEI  R 
Sbjct: 485 NLSETLYKKLLKKNVEVIIDDRNERAGVKFNDADLVGYPIRVNIGKKTLENGEVEIVIRK 544

Query: 423 TGIREDMSLEEVIN---YASHRFSNNR 446
           TG + +   ++ ++          NN+
Sbjct: 545 TGDKINCKKDDALSEILRIREELYNNK 571


>gi|212710377|ref|ZP_03318505.1| hypothetical protein PROVALCAL_01437 [Providencia alcalifaciens DSM
           30120]
 gi|212686959|gb|EEB46487.1| hypothetical protein PROVALCAL_01437 [Providencia alcalifaciens DSM
           30120]
          Length = 572

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHKLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+G     + A++G IGG+ SHEF VLA +GE  V  S
Sbjct: 181 YSKIFTRIGFDFRAVHADTGSIGGNASHEFQVLAQSGEDDVVFS 224



 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +         D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLKLPEVYDLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +  +G +  V MG YGIG  R+VAA IE SHD +GIIWPD++APF ++++ +  H 
Sbjct: 426 KASVQNEEGHNQIVTMGCYGIGVTRIVAAAIEQSHDDRGIIWPDAIAPFHVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + +  ++VE
Sbjct: 486 SYRVKEVAEKLYADLKAQGIDVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDTNQVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R +  ++ + L+ V+++   + + 
Sbjct: 546 YKSRRSDDKQLVGLDNVVSFLKEKLAK 572


>gi|257869188|ref|ZP_05648841.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803352|gb|EEV32174.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 646

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 169/450 (37%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I ++
Sbjct: 226 KELKEFIRLREEAKERDHRKLGKELDLFM-LSPEVGAGLPFWLPKGATIRRTIERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFR 119
           +   G   +  P + + DL+  SG +D Y ++M    D  D  M +  P +      +++
Sbjct: 285 EVSLGYQHVYTPIMANVDLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + I SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +  
Sbjct: 345 NDIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTL 403

Query: 179 VSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              + ++    +     R     P   D   +   + +  +T        +   +   N 
Sbjct: 404 DLMVEVYKDFNVTDYRFRLSYRDPENKDKYFDDDAMWENAQT-------MLKAAMDELNL 456

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D+ +               A      + ++  +L   + +S   ++    F    ++   
Sbjct: 457 DYFEAEGEA----------AFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF--- 499

Query: 298 MSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I + 
Sbjct: 500 -DLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVS 555

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I  RL   G  V  DD  E++G +   + +   P Q++VG + V D+ 
Sbjct: 556 V--DAHSDYAYEIKERLQSQGLRVEVDDRNEKMGYKIRASQMQKIPYQLVVGDQEVKDAT 613

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V I+   +       L   ++  +    N 
Sbjct: 614 VNIRRYGSKETNVEELNIFVDAMAAEVKNY 643


>gi|317047006|ref|YP_004114654.1| prolyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316948623|gb|ADU68098.1| prolyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 572

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWEESGRWEQYGPELLRIKDRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V  S +     
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSSESDYAA 231



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I      P     D+ N    D  P+ K      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYAGINWGRDLPEPRVEDIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +  H 
Sbjct: 426 KAAVQGEDGRNQIMTMGCYGIGITRVVAAAIEQNHDERGIIWPAALAPFEVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + + ++++E
Sbjct: 486 SFRVKEVADELYNALRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNAEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R    +E +   E++++ +   + 
Sbjct: 546 YKARSASEKEMIKHSEIVDFLAKALNK 572


>gi|28871133|ref|NP_793752.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81840044|sp|Q87Y24|SYP_PSESM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28854383|gb|AAO57447.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 571

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAVGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|312132188|ref|YP_003999528.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
 gi|311908734|gb|ADQ19175.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
          Length = 650

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 171/450 (38%), Gaps = 54/450 (12%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L + T    +  KG+  WLP G    + +   ++  Q R+G + +  P
Sbjct: 239 AKRRDHRKLGAELEIFT-FSEKVGKGLPLWLPKGAMLRERLENFLKRAQLRSGYLPVVTP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + S  L+V SG +D YG++  +        +  +  P +     +IF+S  +SYR+LP 
Sbjct: 298 HIGSKQLYVTSGHWDKYGEDSFQPIKTPEEGEEFMLKPMNCPHHCEIFKSKPRSYRDLPL 357

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F    +  +  + K+    L +F  LG
Sbjct: 358 RLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCAN-DQVEDEFKKVIDLVLYVFKSLG 416

Query: 190 LKSIPMRAE-------SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                 +         S  IG D   +    A          K  +++   +      D 
Sbjct: 417 FDDYSAQVSLRSLENRSKYIGSDEDWDKAEKAIVNAAAEKGLKTVVEYGEAAFYGPKLDF 476

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +  +++                               R  ++G I      Y+LP     
Sbjct: 477 MVKDALG------------------------------RKWQLGTI---QVDYNLPKRFDL 503

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H  V +     G+M    A++  +  G    W   ++P +I+++ I    +
Sbjct: 504 EYVGSDNQKHRPVMIHRAPFGSMERFIAILLENTAGNFPFW---LSPEQIAVLPI---SE 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   +++  L +     + D   E+I  +   A++   PL +IVG K   + +V ++
Sbjct: 558 KYEDFANEVFLILQENDIRGYIDHRAEKISRKIRDAEVAKVPLMLIVGEKEQEEGRVSVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  G     S++E I +A +  + N P  
Sbjct: 618 KKGEGDLGSFSVQEFIEFAKNEINKNIPTF 647


>gi|255020885|ref|ZP_05292941.1| Prolyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254969676|gb|EET27182.1| Prolyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 572

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP+L+E P +AE+ SH+L+LR G I + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MRASQSFLPLLKETPAEAELVSHQLLLRGGFIRRLASGLYTWLPLGLRVLRRVEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  +Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV++D+ R 
Sbjct: 61  MDRSGAQEILMTVVQPAELWQESGRWELYGPELLRLKDRHQRDFCLGPTHEEVISDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR+REF+MKDAYSF +     +  Y  M+ +
Sbjct: 121 EIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRAREFIMKDAYSFHMDQASLEEGYRAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F RLGL    + A+SG IGG  SHEF VLAD+GE  +   +      
Sbjct: 181 YCRVFQRLGLDFRAVEADSGAIGGKRSHEFHVLADSGEDAIAFCRHCDYAA 231



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            DF   +   D   +         W   +A    V                 RGIEVGH+
Sbjct: 357 QDFSSGANQRDKHWLHLQWGRDLPWPEAWADLRLVQAGDPCPRCAGGSLEICRGIEVGHV 416

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F  GT+YS  +        G++  V MG YGIG  R+VAA +E SHD +GI+WP+++APF
Sbjct: 417 FQLGTRYSERLGVRVLDEGGREQTVLMGCYGIGVSRIVAATVEQSHDERGIVWPEALAPF 476

Query: 348 KISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           ++ ++ I          A  +++ RL   G     DD  E+ G QFA  DL+G P +V+V
Sbjct: 477 RVGIVAINGRKSPAVLSAALELHDRLEAAGIPTLLDDRDERPGVQFATLDLIGLPHRVVV 536

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             K ++   +E + R       ++ + +
Sbjct: 537 SDKLLAQGMLEYRARRDSDNRLLTPDAL 564


>gi|315648987|ref|ZP_07902081.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315275668|gb|EFU39022.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 645

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 174/441 (39%), Gaps = 35/441 (7%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T       +G+  WLP G K    +   I + + R G 
Sbjct: 235 LHLLEEAKKRDHRKLGKELQMFT-FSQLVGQGLPIWLPNGAKLRRTLERYIVDMEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M    + +++ ++  P +      +++S + SYR
Sbjct: 294 QHVYTPVLGNVELYKTSGHWEHYQEDMFPKMEMDNEELVLRPMNCPHHMMVYKSDMHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ ++ R E+     G+ R R   + D++ F   P+  K  + ++    + ++
Sbjct: 354 DLPIRIAELGMQHRYEMSGALTGLHRVRAMTLNDSHIF-CRPDQIKEEFARVIQLIMTVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+     R                  D  +T+ +   D M         +  +  SL
Sbjct: 413 KDFGIHDYRFRLSYR--------------DPQDTEKYFQNDEMWEMSQRMLREVVE--SL 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L + + +S   ++    F    ++       + G 
Sbjct: 457 DMPFYEAEGEAAFYGPKLDVQIRTALGKEETLSTVQLD----FLLPERF----ELEYVGD 508

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H  V +    +G M    A +  +  G   +W   ++P ++ +I +        D 
Sbjct: 509 DGQKHRPVVIHRGILGTMERFTAFLLENFAGALPLW---LSPVQVKVIPV---SNAFEDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G  V  D   E++G +   A L   P   IVG    +   V ++ R  G
Sbjct: 563 AKEVAEKLQFAGISVEPDLRNEKLGYKIREAQLEKIPYMFIVGENEKNAGAVSVRKRGEG 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
                SL+++I       + +
Sbjct: 623 DIGAQSLDDIILKLREEINTH 643


>gi|299768873|ref|YP_003730899.1| prolyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298698961|gb|ADI89526.1| prolyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 571

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFS 224



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGI+WP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIMWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|260425980|ref|ZP_05779959.1| threonyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260420472|gb|EEX13723.1| threonyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 649

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 150/441 (34%), Gaps = 44/441 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      ++ L    +   + G   W P G     ++   +R  Q + 
Sbjct: 235 KYLNFLEEAAKRDHRKLGREMDLF--HLQPEAPGQIFWHPNGWTVYTSLQDYMRRMQRKD 292

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFR 119
           G +E++ P + +  LW ESG +++Y + M  +    + A         P +      IF 
Sbjct: 293 GYVEVNTPQVVNRKLWEESGHWENYRENMFIVEVDEEGAREKTINALKPMNCPCHVQIFN 352

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    K  
Sbjct: 353 HGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF-CTFDQIEEESKKFI 411

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               +I+  LG  S  ++  + P     S E     +        +        P E   
Sbjct: 412 DFLAKIYADLGFDSWRVKLSTRPEKRVGSEESWDSMEEALANACKAAGREFEIFPGEGAF 471

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   +                                    R  + G +          +
Sbjct: 472 YAPKLEFVLTD---------------------------AIGRDWQCGTL-QLDPNLPERL 503

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + G DG+ H  + +    +G+      ++   H GK   W   +AP ++ + +I + 
Sbjct: 504 DANYVGQDGEKHRPIMLHRAVLGSFERFIGILIEEHSGKLPFW---LAPRQVVVASITS- 559

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +  A L   G     D   E+I  +     L   P+ + VG + V +  V 
Sbjct: 560 --EADDYVHEAVAALRAAGVRAEADVRNEKINYKVREHSLGKVPVILAVGHREVEERTVT 617

Query: 418 IKHRLTGIREDMSLEEVINYA 438
           ++       +  SL+E+    
Sbjct: 618 VRRLGEKQTQVRSLDEIAAEL 638


>gi|332992302|gb|AEF02357.1| prolyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 554

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 157/235 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G +E+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGGVEVLMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG+MR REF MKDAYSF L       +Y  M+ +
Sbjct: 121 EISSYKQLPINLYQIQTKFRDEVRPRFGIMRGREFTMKDAYSFHLDDTCLDKTYQTMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF+R+GL    + A+SG IGG+ SHEF VLA++GE  +  + D         
Sbjct: 181 YGNIFNRMGLDYRAVIADSGSIGGNHSHEFHVLAESGEDAIAFASDSDYAANVEM 235



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 1/162 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVGHIF  G+KYS  M+       GK   + MG YGIG  R+VAA IE +HD  G
Sbjct: 390 IKRGIEVGHIFQLGSKYSEAMNCGVLSETGKHQTLTMGCYGIGVSRIVAAAIEQNHDKYG 449

Query: 338 IIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I+WPD +APFKI+LI +  H     ++A E +Y +L  +G DV +DD  E+ G  F   +
Sbjct: 450 IMWPDPIAPFKIALIPMNMHKSHRIKEAAEALYEQLIALGIDVLFDDRKERPGVMFNDME 509

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           L+G P  +++G + + + ++E K+R TG ++ + L+   ++ 
Sbjct: 510 LIGIPHSIVIGERNLDNQQIEYKNRRTGEKQLLDLDSAKDFV 551


>gi|260891090|ref|ZP_05902353.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260859117|gb|EEX73617.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 636

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 169/441 (38%), Gaps = 46/441 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + +H  G   ++P G +  + +  I R E  + G
Sbjct: 230 YLTMMEEAEKRDHRKLGKQLDLF--FVDEHGPGFPFFMPKGVELFNKLQEIWRVEHKKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW  SG + +Y + M   +  ++K     P +       +++++ SY
Sbjct: 288 YQEIKTPIMLDKELWEISGHWFNYRENMYT-STIDEKEYAIKPMNCPGSIIAYKNNLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  + ++ L  R E      G+MR R F   DA+ F  T E  +    ++   Y + 
Sbjct: 347 KDLPLKYGEMGLVHRHEFSGALHGLMRVRAFTQDDAHVF-CTKEQIEEQIIEIIDLYDKF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E   +A+         K       P +   +   I 
Sbjct: 406 YTVFGFEY-HIELSTKPDKAIGSDEIWEMAEANLKSALEHKGINYKLNPGDGAFYGPKID 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G I      ++LP     ++
Sbjct: 465 FK---------------------------MKDSIGRIWQCGTI---QLDFNLPARFEMSY 494

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H  V +     G++     ++   + G    W   +AP +  ++ I       
Sbjct: 495 IGADGEKHEPVMIHRAMYGSLERFIGILIEHYAGAFPTW---LAPVQARILTI---SDEQ 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKH 420
               ++++ +L   G  V  D   E+IG +   A+     P+Q+I+G   V++++V ++ 
Sbjct: 549 VPFAKELFTKLQDAGIRVELDTRVEKIGYKIREANGDQKIPVQLIIGKNEVANNEVNVRR 608

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +   +++S++E+I      
Sbjct: 609 FGSQDSKNISVDEIIKTLKQE 629


>gi|218259669|ref|ZP_03475318.1| hypothetical protein PRABACTJOHN_00977 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224962|gb|EEC97612.1| hypothetical protein PRABACTJOHN_00977 [Parabacteroides johnsonii
           DSM 18315]
          Length = 651

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 157/452 (34%), Gaps = 48/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T        G+  WLP G +    +   ++  Q 
Sbjct: 228 LDEYLALMEEAKKRDHRKIGKELELFT-FSTAVGAGLPLWLPRGTQLRLKLEDFLKRIQK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +    L+V SG Y  YGK+  +        +  +  P +     +IF+S
Sbjct: 287 KYGYQQVMTPHIGGKQLYVTSGHYAKYGKDSFQPIHTPQEGEEFLLKPMNCPHHCEIFKS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 FPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQLKDEFLKVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               IF  L  ++   +      +  D         +  E+ +  +              
Sbjct: 406 IIFIIFKALDFENFEAQISLRDKVNRDKYIGSEENWEKAESAIIEACQEKGLKAK----- 460

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
                                     E    +    K        +G  +  GT    Y+
Sbjct: 461 -------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYN 495

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + G D K H  V +     G+M    AV+     GK  +W   + P ++S++
Sbjct: 496 LPERFELEYTGEDNKKHRPVMIHRAPFGSMERFVAVLIEHTGGKFPLW---LTPDQVSIL 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +   D   ++  +L      V  DD  E+IG +    +L   P  +IVG K   
Sbjct: 553 PI---SEKFNDYAYEVKRQLEAEDLSVLVDDRNEKIGRKIRDTELKRIPYMLIVGEKEAE 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++V ++ +  G +  M +             
Sbjct: 610 NNEVSVRKQGEGDKGSMKIATFAALLKGEIEE 641


>gi|254294721|ref|YP_003060744.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254043252|gb|ACT60047.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 654

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 155/453 (34%), Gaps = 58/453 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD     ++L L    +   ++G   W P G      + A IR  Q+  G
Sbjct: 232 YLVRLEEAEKRDHRKLGNQLDLF--HLQSEAQGSVFWHPNGFMIWRQLEAYIRRRQDDDG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEE 112
            +E+  P L ++  W +SG +  + + M  + D                + M   P +  
Sbjct: 290 YVEVKTPQLLNSVFWEQSGHWSKFRENMFVVPDEIPSVEEEGPVLSGEGELMALKPMNCP 349

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+   +SYR+LP    +     R+E      G+MR R+    DA+ F    +   
Sbjct: 350 AHVQIFKQGTRSYRDLPLRMAEFGCCHRNEPHGALHGIMRVRQMTQDDAHIF-CREDQVA 408

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +   +    + R++   GL  I  +  + P     + E    A+                
Sbjct: 409 NETLRFLNLFKRVYGDFGLDQISYKLATRPEQRAGNDETWDQAEGALATALNEAGLEFDY 468

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
              E   +   +  +                                 R  + G      
Sbjct: 469 AEGEGAFYGPKLEFHLTD---------------------------AIGRTWQCGT---LQ 498

Query: 292 TKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y LP  + AT+ G DG+ H  V +     G       ++  ++ G   +W   +AP +
Sbjct: 499 LDYVLPERLDATYVGEDGEKHRPVMLHRAVFGTFERFMGILIENYAGAFPMW---LAPTQ 555

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +++  I           EK+ ARL   G  V  D   E+I  +      +  P+  ++G 
Sbjct: 556 VAIATITPK---ADAYAEKVAARLRAKGIRVELDLRHEKINYKVREHSHMKVPVIAVIGM 612

Query: 409 KFVSDSKVEIKHRLTGIR--EDMSLEEVINYAS 439
               + K+ ++    G    E +SL+E     S
Sbjct: 613 NEAEEEKLALRRFGAGNARPEILSLDEACQLLS 645


>gi|123443459|ref|YP_001007432.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332160618|ref|YP_004297195.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|152112962|sp|A1JP53|SYP_YERE8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122090420|emb|CAL13288.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606904|emb|CBY28402.1| prolyl-tRNA synthetase; Bacterial type [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664848|gb|ADZ41492.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330860908|emb|CBX71188.1| prolyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 572

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLPLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   E++YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVQALAEELYATLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E+I++   +  
Sbjct: 546 YKNRRAGEKQMIKTSEIIDFLLSQIK 571


>gi|85059898|ref|YP_455600.1| prolyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|114152253|sp|Q2NRN0|SYP_SODGM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84780418|dbj|BAE75195.1| prolyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 574

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+YSWLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKEVPADAEVVSHQLMLRAGMIRKLASGLYSWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+S+P +Q ADLW ESGR+  YG E+LR  DR  +A + GPTHEEV+TD+ R+
Sbjct: 61  MDNAGAIEVSMPVVQPADLWQESGRWVQYGPELLRFTDRGARAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTSQASLQATYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL+   ++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSAIFTRMGLEFRAVQADTGSIGGSASHEFQVLAGSGEDDIVFS 224



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 104/183 (56%), Gaps = 1/183 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              RGIEVGHIF  GTKYS  M AT +G DG++  + MG YGIG  RV
Sbjct: 392 EGDISPDGNGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQTLTMGCYGIGITRV 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDD 383
           V A IE +HD +GI+WP+++APF ++++ +  H     ++  E +Y +L   G DV  DD
Sbjct: 452 VVAAIEQNHDDRGILWPETLAPFNVAILPMNMHKSFRVKEVAEDLYQQLQARGIDVLLDD 511

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G  FA  +L+G P Q+++G + +   ++E K+R +G +  + L  ++++     +
Sbjct: 512 RKERPGVMFADMELIGVPHQLVIGDRNLDTEEIEYKNRRSGEKRMIKLSAIVDFLVSEIA 571

Query: 444 NNR 446
             +
Sbjct: 572 TAK 574


>gi|300724773|ref|YP_003714098.1| proline tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297631315|emb|CBJ92010.1| proline tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 573

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW+ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWLESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 EVTSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL   P+ A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFTRIGLDFRPVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 116/207 (56%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  +
Sbjct: 366 DDKHYFGINWERDLPLPEIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +  DG +  V MG YGIG  R+VAA IE SHD +GIIW D++APF+++++ +  H 
Sbjct: 426 KATVQNEDGHNQVVTMGCYGIGVTRIVAAAIEQSHDDRGIIWSDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SYRVKEVAEKLYADLRASGIDVIFDDRKERPGVMFADMELIGVPHTLVIGDRNLDNGEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R TG ++ + LE +I Y   +   
Sbjct: 546 YKCRRTGDKQMLKLESIIEYLKGQIQQ 572


>gi|148264838|ref|YP_001231544.1| prolyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146398338|gb|ABQ26971.1| prolyl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 585

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 166/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SH+LMLR GMI + + G+Y++LPLG +++  V  I+REE
Sbjct: 15  MRYSQYFIPTVKETPSDAEVISHQLMLRAGMIRKLAAGVYNYLPLGLRSIRKVENIVREE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PT+Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 75  MNRAGAIELLMPTVQPAELWQESGRWEQYGKELLRFKDRKDTEFCMGPTHEEVITDLVRR 134

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  + +  SY+KM+ +
Sbjct: 135 EVKSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEKAADISYDKMYQA 194

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+   + A++G IGG  SHEF+VLA++GE  +          
Sbjct: 195 YRRIFERCGLRFRAVEADTGSIGGSYSHEFMVLAESGEDAIVSCTACDYAA 245



 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 79/183 (43%), Positives = 108/183 (59%), Gaps = 3/183 (1%)

Query: 263 HNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            N  L D  P          RGIEVGH+F  GTKYS  M AT+  ADGK+  + MG YGI
Sbjct: 397 RNVVLGDPCPRCDSGTLEMWRGIEVGHVFKLGTKYSKAMKATYLDADGKEQIIFMGCYGI 456

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R VAA IE +HD  GII+P  +APF   +  +   ++  RD+ E IYA+L+  G +V
Sbjct: 457 GIGRTVAACIEQNHDDNGIIFPLPIAPFHCIISALNMKEEPVRDSSEAIYAQLAAAGVEV 516

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+G PL+++VGSK ++D KVE+K+R TG  E +S+ + +    
Sbjct: 517 LLDDRDERPGFKFKDADLIGIPLRIVVGSKNLADGKVELKNRKTGDVELLSIADAVEKVK 576

Query: 440 HRF 442
              
Sbjct: 577 AAV 579


>gi|229592381|ref|YP_002874500.1| prolyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229364247|emb|CAY51951.1| proline tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 596

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G K +  V AI+REE
Sbjct: 26  MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLKVMRKVEAIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 86  MNAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLMRN 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 146 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 206 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 250



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 389 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 448

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   ++MG YGIG  RVVAA IE ++D KGIIW D++APF+++L+ ++   
Sbjct: 449 KCEVLGENGKPITLEMGCYGIGVSRVVAAAIEQNNDEKGIIWSDALAPFQVALVPLRYET 508

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +
Sbjct: 509 EQVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 568

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + + +V+++   R  
Sbjct: 569 EYKSRTEAEAQPLPVADVLSFLQARIR 595


>gi|209523462|ref|ZP_03272017.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209496204|gb|EDZ96504.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 622

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 166/447 (37%), Gaps = 41/447 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +Y+    +E   RD      +L L +  I +    G+  W P G +    +    R+   
Sbjct: 211 EYYQQQKEEAKKRDHRKLGQELDLFS--IQEDAGGGLVFWHPKGSRMRLLIEDYWRQAHL 268

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P + + +LW  SG YD Y + M    +  +++    P +       ++SH+
Sbjct: 269 QDGYELLYSPHIANLELWKTSGHYDFYRENMFDQIEIENQSYQLKPMNCPFHVLTYQSHL 328

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  + ++   +R E      G+MR R F   DA+ F L PE        +    
Sbjct: 329 HSYRELPIRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCL-PEQVADEILGVLNLT 387

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I    G     +   + P     +     LA         +K +              
Sbjct: 388 EKILSDFGFSKYEVNLSTRPSKSVGNDAVWQLATDALIAALNTKGWDYVTDEGGG----- 442

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D++    + S   ++    F    ++++     
Sbjct: 443 ---------------AFYGPKIDIKIQDAIGRLWQCSTIQVD----FNLPERFNM----E 479

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ADG +   + +     G++     ++  ++ G   +W   +AP ++ ++ +      
Sbjct: 480 YVAADGSRQRPIMIHRAIFGSLERFFGILIENYAGDFPLW---LAPVQVRVLAV---SDR 533

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            RD  + I   L +       D+ GE++G Q   ++L   P+ V++G + + +  + ++ 
Sbjct: 534 FRDYAQSIAQSLRQQNIRAEVDNTGERLGKQIRNSELEKIPVTVVIGQRELDNQSLSVRT 593

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRP 447
           R +G    M+L ++        +   P
Sbjct: 594 RSSGDLGTMTLPQLTEEILKAIAEKSP 620


>gi|302187169|ref|ZP_07263842.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 571

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL D +++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDLHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 EAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++  V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVAGVLSFIQGKVN 570


>gi|317487453|ref|ZP_07946240.1| threonyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316921312|gb|EFV42611.1| threonyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 646

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 150/438 (34%), Gaps = 40/438 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L        + G+  WLP G      +   +R E  + 
Sbjct: 231 EYLNRIEEAKRRDHRKLGKELDLFAFH-EDVAAGMVFWLPKGMLLRTILEDFLRREHIKR 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   +LW +SG Y +Y + M    +         P +      I+ +H++S
Sbjct: 290 GYQLVQGPQVLRRELWEQSGHYANYRENMY-FTEIEGDMYGIKPMNCVSHMLIYNAHLRS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  ++++ +  R E      G++R R+F   DA+     PE  +     +      
Sbjct: 349 YRELPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICA-PEQLEDEIIGVIALVRD 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G +   +   + P     S E   LA     +     +        +        
Sbjct: 408 LMALFGFQYRVV-ISTKPAKAIGSDEAWELATNALIKAVERANLSYTINAGDG------- 459

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    ++S    +    F    ++       + 
Sbjct: 460 -------------AFYGPKIDVKVTDAIGREWQLSTIQCD----FTLPERF----ELEYV 498

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H   M     +G++     V+   + G    W   +AP +  ++ +        
Sbjct: 499 GQDGERHRPVMVHRAILGSLERFIGVLTEHYAGAFPTW---LAPVQAKILTVT---DAQN 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E+    L K G     D   E++G +   A L   P  ++VG K V    V ++ R 
Sbjct: 553 AFAEEACEALRKQGIRAEVDTRNEKLGFKVREAQLAKIPYILVVGDKEVEARSVNVRLRT 612

Query: 423 TGIREDMSLEEVINYASH 440
                  SL+EV      
Sbjct: 613 GENLGVKSLDEVAALVQE 630


>gi|163756231|ref|ZP_02163346.1| uracil phosphoribosyltransferase [Kordia algicida OT-1]
 gi|161323843|gb|EDP95177.1| uracil phosphoribosyltransferase [Kordia algicida OT-1]
          Length = 647

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 164/451 (36%), Gaps = 41/451 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +L+E   RD      +L L T    +  +G+  WLP G      +   +++ 
Sbjct: 225 KELKEYLHLLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRSQLENFLKKA 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q + G   +  P +   +L+V SG Y  YG++  +     + D+  +  P +     +I+
Sbjct: 284 QQKAGYEMVISPHIGQKELYVTSGHYAKYGEDSFQAINTPKEDEEFLLKPMNCPHHCEIY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +   SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +
Sbjct: 344 NTKPFSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDQEFKNV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + +F  LG  +   +                       +   S +  +    +   
Sbjct: 403 IDLVMYVFESLGFDNFTAQVSLRD-------------PEKPEKYIGSTENWEKAENAIIN 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +      I     A Y    D   +              R  ++G I      Y+LP
Sbjct: 450 AAKEKELNYVIEYGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLP 496

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                T+KG+D + H  V +     G+M    A++     G   +W  +    +  L+ +
Sbjct: 497 ERFDLTYKGSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLMT---EQAILLPV 553

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   +  +K+   L         D+  E +G +   A++   P  +I+G +   D 
Sbjct: 554 ---SEKYENYGKKVLTLLENHEIRAQIDNRNETVGKKIREAEMSKVPFMLIIGEQEEKDG 610

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++    G    +++E   +      +N+
Sbjct: 611 TVSVRRHGVGDIGTLTMEAFADMVKEEINNS 641


>gi|88803834|ref|ZP_01119357.1| threonyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88780362|gb|EAR11544.1| threonyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 646

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 161/447 (36%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      +L L T    +   G+  WLP G      +   +++ 
Sbjct: 226 KLLTEYLALLEEAKQRDHRKLGRELELFT-FSQKVGAGLPLWLPKGAALRGRLEDFLKKA 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
           Q + G   +  P +   +L+V SG Y+ YG +  +     + D+  +  P +     +++
Sbjct: 285 QKKAGYEMVMTPHIGQKELYVTSGHYEKYGADSFQSIKTPKMDEEFLLKPMNCPHHCEVY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +
Sbjct: 345 NFKPYSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQLDQEFKDV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +F  LG +    +                       +     +  +    +  +
Sbjct: 404 IDLVLYVFSSLGFEDFTAQVSIRD-------------KNTPEKYIGDVETWEIAENAIIS 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D      + E   A Y    D   +              R  ++G I      Y+LP
Sbjct: 451 AATDKGLSFVVEEGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLP 497

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                T+KGAD + H  V +     G+M    AV+     G   +W   + P ++ L+ I
Sbjct: 498 KRFDLTYKGADNQLHRPVMIHRAPFGSMERFIAVLLEHTGGNFPLW---LTPDQVILLPI 554

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               Q      EK+   L         D+  E+ G +   A++   P  VIVG K   + 
Sbjct: 555 SDKYQK---YSEKVLESLENSEIRALADNRNEKTGRKIRDAEVSKTPYMVIVGEKEEQEG 611

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++    G     ++EE I+     
Sbjct: 612 TVSVRKHGEGDIGTFTIEEFISLIKTE 638


>gi|222640294|gb|EEE68426.1| hypothetical protein OsJ_26793 [Oryza sativa Japonica Group]
          Length = 701

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 167/449 (37%), Gaps = 43/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 292 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 347

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y + M    +   +     P +      +F
Sbjct: 348 QQYRDRGYQEVLSPNIYNMQLWETSGHAANYKENMFVF-EIEKQEFGLKPMNCPGHCLMF 406

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +
Sbjct: 407 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRESQIKDEVKAV 465

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P       E    A+   T+              +  
Sbjct: 466 LDFINYVYEIFGFKY-ELELSTRPEKYLGDIETWNKAEQQLTEALNEFGKPWQINEGDG- 523

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  +FD+L    + +   ++    F    ++ L 
Sbjct: 524 -------------------AFYGPKIDIGVFDALKRKFQCATLQLD----FQLPLRFKLT 560

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +     +  V +    +G++  + A++   ++GK   WP  ++P +  + +I ++
Sbjct: 561 YSA--EDEAKLERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSISSN 615

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V 
Sbjct: 616 S---VEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVS 672

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R       +S++++I       +  +
Sbjct: 673 VRVRDKAELATVSIDDIITRFKEEVAAYK 701


>gi|221133881|ref|ZP_03560186.1| prolyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 570

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 164/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR+GM+ + + G+Y++LP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVVSHQLMLRSGMVRKVASGLYNYLPTGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEIQMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVVTALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REFLMKDAYSF L+ +  + +Y+KMF +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGIMRGREFLMKDAYSFHLSQDCLQTTYDKMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F R+GL+  P+ A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YCNVFERIGLEYRPVIADNGSIGGSGSHEFHVLADSGEDDIAFSN 225



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 105/201 (52%), Gaps = 3/201 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           D +           P     D+ N +  D  P  +      RGIEVGHIF  G KYS  M
Sbjct: 367 DDVHYTGANWSRDVPEYEVFDLRNIQAGDPSPCGQGTIEIKRGIEVGHIFQLGNKYSQAM 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +       GK   + MG YGIG  R++AA IE +HD  GI WPD++APF I++I +  H 
Sbjct: 427 NCGVLTETGKHETLTMGCYGIGVSRIMAAAIEQNHDKYGIKWPDAIAPFTIAIIPMNMHK 486

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y     +G +V +DD  E+ G  F   +L+G P  +++G + + + +VE
Sbjct: 487 SHRIKEVAEKLYEECLALGVEVLFDDRKERPGVMFNDMELIGVPHSIVIGERNLDNQEVE 546

Query: 418 IKHRLTGIREDMSLEEVINYA 438
            K+R TG ++ +++ ++  + 
Sbjct: 547 YKNRRTGEKKMLNIADLSEFI 567


>gi|295099750|emb|CBK88839.1| threonyl-tRNA synthetase [Eubacterium cylindroides T2-87]
          Length = 391

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 143/417 (34%), Gaps = 39/417 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +++ G+  +LP G    + +     EE  + G   +  P + S +LW  SG ++ Y +
Sbjct: 6   VSEYAPGMPIFLPNGMILRNILEQFWYEEHTKAGYQFIKTPIMMSKELWETSGHWEHYKE 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      +D+     P +      ++ S + SY+ LP+   ++    R E      G+ 
Sbjct: 66  NMYTTMV-DDREFAIKPMNCPGALLVYNSSLHSYKELPYRIGELGQVHRHEASGALNGLF 124

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHE 209
           R R F   DA+ F +TP+  +     +     RI+   GL    +   + P  G   S E
Sbjct: 125 RVRTFTQDDAHLF-VTPDQIESEVKNVLGLIDRIYSVFGLPY-DIELSTRPESGYIGSEE 182

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               ++                 P +   +   + +                        
Sbjct: 183 IWQKSEEALANACIHAGKEYKVNPGDGAFYGPKLDI------------------------ 218

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
                K    R  + G I             T+   DG K   V +     G++     +
Sbjct: 219 ---HIKDSLGRVWQCGTI-QLDMNLPERFGCTYVDKDGSKKTPVMLHRVIYGSIERFIGI 274

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     G   +W   +AP +  +I +  H +   +  +K+   L   G  V  DD  E++
Sbjct: 275 LIEHFAGHFPLW---LAPRQFVVIPV--HQEKHLEYAQKVVKALQDAGMRVELDDRNEKL 329

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G +   A +   P Q++VG     +  V I+       + M+L E +          
Sbjct: 330 GYRVREAQMSKVPYQIVVGDGEAENETVTIRQSGKKESKTMALNEALEKFVKEVEEK 386


>gi|198284332|ref|YP_002220653.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666034|ref|YP_002426993.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|259516307|sp|B7J7T0|SYT_ACIF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516338|sp|B5EN57|SYT_ACIF5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198248853|gb|ACH84446.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518247|gb|ACK78833.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 644

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 77/432 (17%), Positives = 147/432 (34%), Gaps = 40/432 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L +  I +    G+  W P+G +    +    +E     
Sbjct: 231 YLQQLAEAEKRDHRRIGTELELFS--IQEDAGGGLVFWHPMGSRVRRVIEDFWKEAHVEA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +    LW  SG  D Y + M        +A    P +      I++  + S
Sbjct: 289 GYDLLYTPHIAHEQLWYTSGHKDFYSESMFDPMQDEGQAYQLKPMNCPFHILIYKDKLHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + ++   +R E+     G+MR R F   DA+ F   P+  +     + V   +
Sbjct: 349 YRDLPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHVF-CRPDQIEAEIGAVLVLVRK 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P     S E    A                             
Sbjct: 408 ILGTFGFDQYEINLSTRPGHSVGSDEIWDAATQALRNALERAGLEYQVDAGGG------- 460

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++++     + 
Sbjct: 461 -------------AFYGPKIDLKIQDAIGRKWQCSTVQLD----FNLPERFAM----EYV 499

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +   + +     G++     V+   ++GK  +W   +AP +  ++ I    +   
Sbjct: 500 AEDGARKVPIMVHRAIFGSIERFFGVLIEHYEGKFPVW---LAPVQAVVLPI---SEHYS 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E +   L K G     D   E+IG +     L   P  ++VG +      V ++ R 
Sbjct: 554 EYAESVSDVLVKRGIRAETDLRNEKIGYKIRAHTLRRVPYLLVVGEREKEAGTVAVRDRN 613

Query: 423 TGIREDMSLEEV 434
                 +S++ V
Sbjct: 614 GQDLGTLSIDAV 625


>gi|51245016|ref|YP_064900.1| prolyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|81826866|sp|Q6AP31|SYP_DESPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50876053|emb|CAG35893.1| probable prolyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 570

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P  +E P +AE+ASH+LMLR G + + S G+YS+LP G  A+  V  I+REE
Sbjct: 1   MRYSQSFIPTKKETPAEAEVASHQLMLRAGFMRKLSSGVYSYLPYGLAAIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA EM +P +Q ADLW E+GRY+ YG E+LR  DRN++    GPTHEEV+TDI R+
Sbjct: 61  MNRAGAQEMLMPMVQPADLWKETGRYEKYGPELLRFFDRNNRESCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  E +  SY+KMF +
Sbjct: 121 ELSSYRDLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDVDDEQANLSYDKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+  P++A+SG IGG  SHEF+VLA TGE  +   KD     
Sbjct: 181 YKRIFTRCGLQFRPVQADSGAIGGSHSHEFMVLAKTGEDTIVVCKDCEYAA 231



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 2/177 (1%)

Query: 269 DSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P    +     GIEVGH+F  GT YS  M+A F+   G +    MG YGIG  RVVA
Sbjct: 389 DPCPRCGGRLELTEGIEVGHVFKLGTGYSESMNARFQDGTGDEKPFVMGCYGIGVSRVVA 448

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE +HD  GII+P  +AP+ ++++N+   D     A EK+YA L   G  V  DD  E
Sbjct: 449 AAIEQNHDKDGIIFPVPLAPYTVTVLNLGLKDPEITAAAEKLYAELQAAGLSVLLDDRDE 508

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + G++F  ADLLG P ++ VG     +  VE++ R  G  E+M+ E   ++ +    
Sbjct: 509 RPGAKFKDADLLGIPYRLTVGKGLAKNGMVEVRRRRDGHTEEMTPEVAADFLARCIQ 565


>gi|226951685|ref|ZP_03822149.1| prolyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|294651367|ref|ZP_06728686.1| proline--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837601|gb|EEH69984.1| prolyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|292822769|gb|EFF81653.1| proline--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 571

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+YSWLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYSWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGR++ YG E+LR  DR++   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPAALWEESGRFEQYGPELLRFKDRHNNDFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFSRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFS 224



 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 73/194 (37%), Positives = 102/194 (52%), Gaps = 3/194 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +     A +    D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWDRDATFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE + D KGIIWP ++APF ++++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNFDDKGIIWPQAIAPFDVAIVPMNAHKSPRTVEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGYDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYA 438
              +++ EE+    
Sbjct: 556 EASNLNKEELFAKL 569


>gi|195587264|ref|XP_002083385.1| GD13380 [Drosophila simulans]
 gi|194195394|gb|EDX08970.1| GD13380 [Drosophila simulans]
          Length = 458

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 132/456 (28%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYTFDVSEESARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +            
Sbjct: 182 YSVVNSAYDRLFKQLEVPFVKVNAATGMMGGSVSHEYHYVSPVGEDNLLQCSSCGFA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F  G K
Sbjct: 239 -----------------------GNSEVVTAPARCPSCNSSDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +    A       L  VG      ++  DD  E  IG +   A  LG PL ++VG
Sbjct: 336 PKQGSKEQPQAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVG 395

Query: 408 SKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +K       K+E+     G   ++   E +   +  
Sbjct: 396 AKSARQDSPKLEVHT-SKGETYELDFSETLKLVAEH 430


>gi|86357812|ref|YP_469704.1| threonyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|123765783|sp|Q2K859|SYT_RHIEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|86281914|gb|ABC90977.1| threonyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 668

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 152/451 (33%), Gaps = 54/451 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + A +R     
Sbjct: 234 YLHML----AEAEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-A 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
               E++ P +    LW  SG +  Y + M  +            + +++     P +  
Sbjct: 289 IDYEEVNAPQVLDTSLWETSGHWGWYQENMFGVKSAHAMTHPDDKEADNRVFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F  T E   
Sbjct: 349 GHVQIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMA 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               K+    L ++   G K I ++  + P     S      A+   T V  +       
Sbjct: 408 AECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKT------- 460

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                    +  S   I         A      E         K    R  + G      
Sbjct: 461 --------IEAQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---Q 503

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +  ++  K   V +     G+M     ++  +  G   +W   V+P +
Sbjct: 504 VDFNLPERFGAFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---VSPLQ 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +          ++   L + G +V  D   E+I  +     +   P+ ++ G 
Sbjct: 561 VVVATITS---EADAYGLEVAEALREAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGR 617

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           K   D  V I+   +  +  M L+  +   +
Sbjct: 618 KEAEDRTVNIRRLGSQDQVSMGLDTAVESLA 648


>gi|149909734|ref|ZP_01898386.1| prolyl-tRNA synthetase [Moritella sp. PE36]
 gi|149807248|gb|EDM67203.1| prolyl-tRNA synthetase [Moritella sp. PE36]
          Length = 573

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 123/225 (54%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GM+ + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRSSNYLLSTLKETPNDAEVISHQLMLRAGMVRRLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E  +P +Q ADLW E+GR D +G E+LR+ DR++++ + GPTHEEV+TDI R 
Sbjct: 61  MDKAGAVETLMPMVQPADLWQETGRIDKFGPELLRINDRHNRSFVLGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF ++ E    +YNKM  +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHISDECLNDTYNKMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R+GL+  P+ A++G IGG +SHEF VLA++GE  +  S 
Sbjct: 181 YCNIFERIGLEYRPVLADTGSIGGAVSHEFHVLAESGEDDIVFSD 225



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 111/198 (56%), Gaps = 3/198 (1%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                      +D+ N    ++ P  K      RGIEVGHIF  GT+Y+  M A      
Sbjct: 376 NWDRDITEYTVADIRNVVEGEASPCGKGTLSIKRGIEVGHIFQLGTQYAEAMKAGVLNMQ 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDAC 365
           GK   + MG YGIG  R+VAA IE +HD  GIIW +S+AP+K+S+I +  H     ++A 
Sbjct: 436 GKQQIMTMGCYGIGVSRIVAAAIEQNHDENGIIWNESIAPYKVSIIPMNMHKSADVKEAA 495

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EKIYA L   G +VF+DD  E+ G  FA ++L+G P  +I+G + + +  VE K RLTG 
Sbjct: 496 EKIYADLQAAGIEVFFDDRKERPGVMFADSELIGIPHNIIIGDRSLKNGLVEHKLRLTGD 555

Query: 426 REDMSLEEVINYASHRFS 443
           + ++++ +++ +     +
Sbjct: 556 KTEVAVADIVAHVKSLLA 573


>gi|302669952|ref|YP_003829912.1| threonyl-tRNA synthetase ThrS [Butyrivibrio proteoclasticus B316]
 gi|302394425|gb|ADL33330.1| threonyl-tRNA synthetase ThrS [Butyrivibrio proteoclasticus B316]
          Length = 602

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 153/442 (34%), Gaps = 52/442 (11%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD  +   +L L   M      G+  + P G    + +    R+   R G 
Sbjct: 201 LHQLEEAKARDHRVLGKELELFALM--DEGPGLPFYFPKGLVLKNLLIDYWRKIHVREGY 258

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+S P + +  LW +SG +D Y   M  +   +D      P +      +++S   SYR
Sbjct: 259 QEISTPIMLTKALWEKSGHWDHYRDNMY-VTSVDDMDYAIKPMNCPGGMLVYKSKPHSYR 317

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             P    ++ +  R E      G+MR+R F   DA+ F +  +        +      ++
Sbjct: 318 EFPIRCGELGIVHRAEKSGTLHGLMRARCFTQDDAHIF-MREDQVLSEIQGVMRLIDEVY 376

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            + G     +   + P     S E   LA                    +   +   +  
Sbjct: 377 SKFGFPY-EIELSTRPENSIGSDEDWQLATESLKAAVEGMGKPYKINEGDGAFYGPKLDF 435

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATF 302
                                        K    R  + G I   F    ++       +
Sbjct: 436 ---------------------------HVKDSIGRTWQCGTIQLDFQLPQRF----DLEY 464

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK+H  + +     G++     ++   + GK  +W   ++P ++ ++ +       
Sbjct: 465 IGEDGKEHRPIMLHRVVFGSIDRFMGILIEHYAGKFPVW---LSPVQVKVLPV---SDKY 518

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I A+L + G     DD  E++G +   A +   P  +IVG K   +  V ++ R
Sbjct: 519 LDYAKEIMAKLYEEGIRAELDDRDEKLGFKIREARMQKVPYMIIVGEKEKDNRLVSVRQR 578

Query: 422 ----LTGIREDMSLEEVINYAS 439
                     +M + + I+   
Sbjct: 579 DAEQDKQEIGEMDMADFIDLLK 600


>gi|229586468|ref|YP_002844969.1| threonyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|259516664|sp|C3PMR6|SYT_RICAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|228021518|gb|ACP53226.1| Threonyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 635

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 157/440 (35%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-AEQITDETVSFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E    A+    +      F     P E   +   + 
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNEVWDKAENALKEAVEQAGFNYTLNPGEGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G    ++   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIDNGIRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRL 610

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I      
Sbjct: 611 GTTDQEVLSVEQLIAVVKEE 630


>gi|148555657|ref|YP_001263239.1| threonyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|148500847|gb|ABQ69101.1| threonyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 690

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 150/439 (34%), Gaps = 47/439 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    +   ++G   W P G +    + A +R + +  G 
Sbjct: 264 LTRLEEAAKRDHRRIGQEMDLF--HLQSEAQGSVFWHPKGFRLWRALEAYMRRKLDAAGY 321

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
           +E+  P L  A  W +SG +  Y + M  + D                + M   P +   
Sbjct: 322 VEVKTPQLMDARQWEQSGHWGKYRENMFVVPDEIPNAEEEGPVLSGESELMALKPMNCPA 381

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR  IKSYR+LP    +     R+E      G+MR R+F   DA+ F +  +    
Sbjct: 382 HVLIFRQGIKSYRDLPIRMAEFGCCHRNEPHGALHGIMRVRQFTQDDAHIF-VREDQLIA 440

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG +   ++    P     S E    A+        +        
Sbjct: 441 EIKDFCDLLDAVYRDLGFEQYAIKLALRPEKRFGSEEMWDKAEQTLRDAVAASGRATEAF 500

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E  + +               YA   + H                R  +VG I    T
Sbjct: 501 GWEELEGEGAF------------YAPKLEFHLTDAIG----------RTWQVGTI-QADT 537

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H  V +    +G       ++   H G+  +W   +AP +  +
Sbjct: 538 VLPERLDASYVGEDGERHRPVMLHRAILGTFERFIGILIEHHAGRFPLW---LAPVQAVV 594

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             I +      D   ++ A+L+  G  V  D   E+I  +     L   P  ++VG +  
Sbjct: 595 ATIVSD---ADDYAREVEAKLAAAGLRVESDLRNEKINYKVREHSLAKVPALLVVGKREA 651

Query: 412 SDSKVEIKHRLTGIREDMS 430
            +  V I+      +  + 
Sbjct: 652 EEGTVAIRRLGEQAQTVLP 670


>gi|34580760|ref|ZP_00142240.1| threonyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28262145|gb|EAA25649.1| threonyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 635

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 156/440 (35%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-AEQITDETVSFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E    A+    +      F     P E   +   + 
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNEVWDKAENALKEAVEQAGFNYTLNPGEGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     +   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIDNGVRTDVNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRL 610

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I      
Sbjct: 611 GTTDQEVLSVEQLIAVVKEE 630


>gi|262281159|ref|ZP_06058941.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257390|gb|EEY76126.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 571

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHANPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAFS 224



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGI+WP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIMWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G D+  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AESLYAELQAQGFDILLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|157413014|ref|YP_001483880.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166987324|sp|A8G3W3|SYT_PROM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157387589|gb|ABV50294.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 638

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 158/446 (35%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  ++E    AE   H+ + +      I + S G+  W P G      +   IRE   +
Sbjct: 231 YLKRIEE----AEKRDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIREILKK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +E+  P      LW +SG ++ +  +M   A  N +     P +      +F   +K
Sbjct: 287 NDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTASEN-RTYAIKPMNCPCHIQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +       
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIF-CTEEQIQEEVSTFIDLVF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++  + P     S E    ++   T+   +K+      P E   +   
Sbjct: 405 EVYKTFGFDEIIIKLSTRPKKKVGSEEIWDKSEEALTKALDNKNLKWELQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G I      +S+P  + A
Sbjct: 465 IEFSL---------------------------KDCLNRVWQCGTI---QVDFSMPIRLDA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   D  K + V +    +G+      ++   ++ K  IW   +AP++++L++I   + 
Sbjct: 495 TYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIW---LAPYQLTLLSITDRN- 550

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C K    L   G     D   E+IG +   A L   PL  ++G K      V ++
Sbjct: 551 --IEKCLKFNELLINNGYRSTVDIRNEKIGYKIREATLERVPLIAVIGDKEEEIDSVSLR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                     +L  +           
Sbjct: 609 ALDGRNLGIFNLPNLCKLMDGLIEKR 634


>gi|146276901|ref|YP_001167060.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|166225490|sp|A4WQU1|SYT_RHOS5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145555142|gb|ABP69755.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 646

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 148/443 (33%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L    + + + G+  W P G +    +   +R    +
Sbjct: 234 KAYLHMLEEAAKRDHRKLGKEMELF--HLQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRK 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG +++Y + M  +    + A         P +      ++
Sbjct: 292 AGYKEIRTPQVVDRKLWEASGHWEAYKENMFLVEVEEEHAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIF-CTEDQIEGECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG  S  ++  + P     S E     +T                P E  
Sbjct: 411 IELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIKKVGAAYEIDPGEGA 470

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +                                    R  + G  F         
Sbjct: 471 FYGPKLDFKLTD---------------------------AIGRKWQCGT-FQVDPNLPTR 502

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + G DG K     +    +G+      ++  ++ GK   W   +AP ++ + +I +
Sbjct: 503 LGAEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFW---LAPRQVVVASIVS 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A L   G     D   E+I  +     +   P+ + +G + V    V
Sbjct: 560 D---ADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEGRTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       E   L++V+   +
Sbjct: 617 SVRRLGETGTESAPLDQVVERLA 639


>gi|198283898|ref|YP_002220219.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666412|ref|YP_002426532.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226731419|sp|B7J4Y9|SYP_ACIF2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731420|sp|B5EKH7|SYP_ACIF5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|198248419|gb|ACH84012.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518625|gb|ACK79211.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 570

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P L+E P +AE+ SH+L+LR G I + + G+Y+W+PLG + L  V  ++REE
Sbjct: 1   MRASQIFIPTLKETPAEAELVSHQLLLRGGFIRRLASGLYTWMPLGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV++D+ R 
Sbjct: 61  MDRSGAQELLMPVVQPAELWQESGRWEQYGPELLRLRDRHDREFCLGPTHEEVISDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF +     + +Y  M+ +
Sbjct: 121 EIHSYRQLPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHMDHSSLEITYQAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F RLGL    + A++G IGG  SHEF VLAD+GE  +          
Sbjct: 181 YQRVFTRLGLSFRAVEADNGAIGGKRSHEFHVLADSGEDAIVSCHHCDYAA 231



 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 97/202 (48%), Gaps = 4/202 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSA 300
              ++      P  A +D+ N +  D+ P          RGIEVGH+F  G +YS  M  
Sbjct: 365 HWINLNWDRDLPRPAAADLRNVRAGDACPHCAEGTLSIRRGIEVGHVFQLGERYSESMGI 424

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQ 359
           T     G+D  V MG YGIG  RVVAA +E   D +GIIWP ++APF++ ++ I A    
Sbjct: 425 TVLDETGRDATVTMGCYGIGVSRVVAAAVEQHFDDRGIIWPVALAPFEVGIVAINARKSP 484

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               A + ++ RL   G  V  DD  E+ G QFA  DL+G P +++V    ++    E +
Sbjct: 485 DVAAAAQALHDRLEAEGYSVLLDDRDERPGVQFATMDLVGLPHRIVVSDTVLAQGVWEYR 544

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R T     +   +++      
Sbjct: 545 ARRTTENVLLDETQLMERLRKE 566


>gi|254489788|ref|ZP_05102983.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224464873|gb|EEF81127.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 673

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 152/444 (34%), Gaps = 44/444 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  ++E   RD      +L L      + + G   W   G + L  + A +R  
Sbjct: 237 KALKAYLHQMEEAEKRDHRRLGKQLDLF--HFQEEAPGSVFWHHKGWQILQELIAYLRRR 294

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + G IE++ P +    LW  SG + +Y   M      + +     P +      ++R 
Sbjct: 295 QQQEGYIEVNSPDVMDRSLWETSGHWQNYRDHMFTTETADGRFFALKPMNCPGSVLLYRQ 354

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           ++ SYR+LP    +     R E      G++R R F   DA+ +  T    +        
Sbjct: 355 NLTSYRDLPIRMSEFGKVHRYEPSGTLHGLLRVRHFTQDDAHIY-CTQSQMQDECMSAIR 413

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++ +LG   I ++  + P     + E   L +    +            P E   +
Sbjct: 414 FILDVYDQLGFHDIKIKLSTRPEHRIGTDETWDLLEETLIESLNELKLDYQTNPGEGAFY 473

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              +                               +    R  + G         +LP  
Sbjct: 474 GPKLEF---------------------------VLQDAIKRDWQCGT---LQVDMNLPER 503

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   +G K   V +     G++     ++   ++GK  +W   + P ++ +  I  
Sbjct: 504 FDLDYVDNNGLKQRPVMLHRALFGSLERFIGILLEHYEGKLPVW---LMPIQLVICAISD 560

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +       E++   L   G  V  D   E+IG +     L   P   + G K  + + +
Sbjct: 561 ANAT---YVEQLATVLRYHGLRVSTDTRSEKIGYKIRQHTLQRIPYIAVAGDKEQASNTL 617

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            I+ +       +S++E IN  S 
Sbjct: 618 SIRQQNGDTMGSLSIKETINTLSE 641


>gi|315126673|ref|YP_004068676.1| prolyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315015187|gb|ADT68525.1| prolyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 574

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/225 (54%), Positives = 155/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR+  +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWSEFGPELMRFTDRHNREFAMGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF LT E    +Y  M  +
Sbjct: 121 EINSYKQLPITLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLTDECLDATYQVMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL   P+ A++G IGG +SHEF VLA++GE  +  S 
Sbjct: 181 YCNIFERLGLDFRPVIADTGSIGGSVSHEFHVLAESGEDAIAFSD 225



 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I           +D+ N    D  P  +      RGIEVGHIF  GTKYS  M
Sbjct: 368 DDEHFSGINWDRDVTDYEVADIRNIVEGDPSPCGQGTLQIKRGIEVGHIFQLGTKYSEAM 427

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            A      GK+  + MG YGIG  RVVAA IE ++D  GI WP ++APF ++++ +  H 
Sbjct: 428 KAGVLSESGKNQTMTMGCYGIGVSRVVAAAIEQNNDQYGITWPKAIAPFDLAIVPMNMHK 487

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    +Y  L   G DV +DD  E+ G  F   +LLG P  +++G + + ++KVE
Sbjct: 488 SHRIPDIANNLYQGLKDAGLDVLFDDRKERPGVMFNDMELLGVPYTLVIGERNLDENKVE 547

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +K+R TG +  + ++  I    ++F+
Sbjct: 548 LKNRRTGEKLMIDIDSAIETIKNQFN 573


>gi|91774775|ref|YP_544531.1| prolyl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|123254834|sp|Q1H497|SYP_METFK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91708762|gb|ABE48690.1| prolyl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 573

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/226 (53%), Positives = 166/226 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P++AE+ASHKLMLR G+I +   G+YSW+PLG + L  V  I+REE
Sbjct: 1   MRASQFFLATQKEAPQEAELASHKLMLRAGLIKRLGSGLYSWMPLGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPAVQPKELWEETGRWAVFGPQMLKIRDRHERDFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKD YSF  + E  + +Y+ M+ +
Sbjct: 121 EIRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDGYSFHTSLESLQQTYDTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y  IF+RLGLK   +RA++G IGGD SHEF VLAD+GE  +   + 
Sbjct: 181 YSNIFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYCEH 226



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 102/183 (55%), Gaps = 3/183 (1%)

Query: 263 HNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGHIF   TKY+  M AT+   +G+  +++MG YGIG
Sbjct: 391 RNVVEGDPSPDGKGCISLCRGIEVGHIFQLRTKYTEAMEATYLDENGQKQFMEMGCYGIG 450

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R+V A IE  +D +GII+P ++APF +++  I     +  + A   +Y  LS +G DV
Sbjct: 451 VSRIVGAAIEQGNDERGIIFPAAMAPFSVAIAPIGYDKSEAVQSAAHALYDELSALGIDV 510

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD GE+ G  FA  +L+G P ++++G + + + +VE + R     E ++L ++++   
Sbjct: 511 LLDDRGERPGVMFADLELIGIPHRIVIGDRGLKEGQVEYQARTAASAETVALADIVSIVR 570

Query: 440 HRF 442
              
Sbjct: 571 QAL 573


>gi|332974215|gb|EGK11148.1| proline--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 570

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPAEASLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR++    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVVQPADLWKESGRWDFYGDELLRITDRHENPFCFSPTCEEMITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY I  KFRDE RPRFGVMR+REF+MKDAYSF    +  K +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHINTKFRDERRPRFGVMRAREFVMKDAYSFHADFDSLKETYQNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F+RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRVFNRLGLNFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDRSDYAA 231



 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 114/259 (44%), Gaps = 3/259 (1%)

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G+KS    A +  I          L   G      +    +           D       
Sbjct: 312 GVKSPLTMASADAILAAFGANGGSLGPVGFKGKVYADFATEKGADWVIGANVDDYHYTGF 371

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                A      D+ N    D  P        ARGIEVGH+F    KYS  M+ATF   +
Sbjct: 372 NFGRDAAEPEFVDLRNVVEGDPSPCGSGSLKLARGIEVGHVFQLRDKYSKAMNATFLDNN 431

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE ++D +GIIW D+++PF + ++ +        + A 
Sbjct: 432 GKSQIMEMGCYGIGVTRIVAAAIEQNNDERGIIWTDAMSPFTVVIVPMNYKKSDDVKAAA 491

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +KIYA+L   G DV  DD  E+ G     ++LLG P +V++G + + +  VE   R    
Sbjct: 492 DKIYAQLQAAGVDVLLDDRDERAGVLLNDSELLGIPHRVVIGDRALKEGNVEYAQRRDTE 551

Query: 426 REDMSLEEVINYASHRFSN 444
            + +S+ +++       + 
Sbjct: 552 SQAISVNDIVAKIVATLTK 570


>gi|325123334|gb|ADY82857.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 571

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFS 224



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 107/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A  +   D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQISEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AESLYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|238763953|ref|ZP_04624909.1| Prolyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238697770|gb|EEP90531.1| Prolyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 572

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLADSGEDDIVFS 224



 Score =  225 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLPLPHIADLRNVVEGDISPDGQGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  V++G + +   +VE
Sbjct: 486 SFRVKELAEELYTTLRAHGIDVILDDRKERPGVMFADMELIGVPHNVVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +  +   E+I++   +  
Sbjct: 546 YKNRRAGEKHMIKTSEIIDFLLSQIK 571


>gi|163790751|ref|ZP_02185177.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873931|gb|EDP68009.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 645

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 166/446 (37%), Gaps = 38/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K F+ + +E   RD      +L L   MI  +   G+  WLP G      +   I + + 
Sbjct: 229 KEFIQMREEAKLRDHRKLGKELDLF--MISPEVGSGLPFWLPKGATIRRTIERYIVDREI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSH 121
             G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ 
Sbjct: 287 SLGYQHVYTPIMADVNLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKND 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++    R E      G+ R RE  + D ++F + P+  +  + +    
Sbjct: 347 VHSYRELPIRIAELGQMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIEEEFKRTLEL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L ++    +     R                  D   T+ +   D M     +      
Sbjct: 406 MLAVYGDFNITDYRFRLSYR--------------DPNNTEKYYDDDAMWEKAQTMLKAAM 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L+    +     A      +  +  ++   + +S   ++    F    ++      
Sbjct: 452 DDMGLD--YFEAEGEAAFYGPKLDVLVKTAIGIEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T+ G DG++    V +    +  M    A +   + G    W   +AP + ++I +    
Sbjct: 502 TYVGEDGENNHRPVVIHRGIVSTMERFVAYLIEEYKGAFPTW---LAPVQATIIPVNL-- 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            +  D   +I  ++ ++G  V  D+  E++G +   +     P Q++VG   V D+ V +
Sbjct: 557 DMHTDYAYEIKKQMERIGMRVEVDERNEKMGYKIRASQTQKIPYQLVVGDSEVQDNTVAV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           +         ++L E +   S    N
Sbjct: 617 RKYGEKATVTINLSEYLETVSKEIEN 642


>gi|85375301|ref|YP_459363.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|123293655|sp|Q2N6X5|SYT_ERYLH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84788384|gb|ABC64566.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 672

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 149/457 (32%), Gaps = 53/457 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++    L  L+E    A    H+ + R      + + + G   W P G K    + A +R
Sbjct: 241 KQLNAHLHRLEE----AAKRDHRKLGREMDLFHLQEEAHGSVFWHPQGYKIWRELEAYMR 296

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMI 105
            + +  G  E+  P +  A  W +SG +  Y + M  + D              +   M 
Sbjct: 297 RKMDGAGYREIKTPQVMDARQWEQSGHWGKYRENMFVIPDEIPNTEDEGELVSKDADWMA 356

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFD 164
             P +      +F+  I SYR+LP    ++    R+E      G+MR R+F   DA+ F 
Sbjct: 357 LKPMNCPAHVLVFKQGITSYRDLPIRLGEMGCCHRNEPHGALHGLMRVRQFTQDDAHIF- 415

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            T +               ++   G     ++    P     S E    A+         
Sbjct: 416 CTEDQVVEEVRAFCKLADEVYRDFGFDY-DVKLALRPEQRFGSEEDWDKAEQELRDAVAE 474

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +     E    +       +    T                          R  +V
Sbjct: 475 AGMANDDYGWEELPGEGAFYAPKLEWHLTDA----------------------IGRTWQV 512

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           G I          + AT+ G DG K   V +     G+      ++     G+  +W   
Sbjct: 513 GTI-QGDRVLPERLDATYVGEDGGKHRPVMLHRAIFGSYERFIGILIEHFAGRLPVW--- 568

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP +  +  I +         ++  A+L   G  V  D   E+I  +     L   P  
Sbjct: 569 LAPTQAVVATIVSD---ADGYAKEAVAKLEAAGIRVDGDLRNEKINFKVREHSLAKVPHL 625

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           ++VG +   +  V ++      ++ MSL++ I     
Sbjct: 626 LVVGKREAEEGTVAVRTLGEKEQQVMSLDDAIAMLKD 662


>gi|317154070|ref|YP_004122118.1| prolyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944321|gb|ADU63372.1| prolyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 579

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 130/271 (47%), Positives = 176/271 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P DAE+ SHKL++R GMI + + GIY++LPLG ++++ V  I+REE
Sbjct: 1   MRLSRYYIPTLKEDPADAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLRSINKVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+S+P +Q ADLW E+GR+D YGKE+LRL DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAMEVSMPMVQPADLWQETGRWDYYGKELLRLKDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EIKSYKQLPINLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFDRDEAGAETSYWAMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y   F R+GL+  P++A+SG IGGD SHEF+VLADTGE  +   K         +     
Sbjct: 181 YKAAFSRIGLRFKPVQADSGAIGGDFSHEFMVLADTGEDTIASCKSCQFGANLEKAKVAV 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                             T D H      + 
Sbjct: 241 PQGECLCNAPCPPIEQVETPDRHTVDEVCAF 271



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE        +GIEVGH+F  G KYS  M ATF   +GK  Y+ MG YGIG  R+VA
Sbjct: 393 DPCPECGSEIEFTKGIEVGHVFKLGLKYSKKMEATFLDENGKTQYMVMGCYGIGVSRIVA 452

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + IE ++D  G  +P S+APF+  LI++   D+       ++Y +L  +G D  +DD  E
Sbjct: 453 SAIEQNNDEAGCCFPPSIAPFEAVLISLGGKDEAVDAKAAELYEQLRVLGVDACFDDRKE 512

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + G +FA ADL+G+P+Q+++G K ++   VE K R TG + ++ +     
Sbjct: 513 RPGVKFAEADLIGYPMQLVLGGKGLASGIVEAKDRKTGEKIELPINGFAE 562


>gi|325954887|ref|YP_004238547.1| threonyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437505|gb|ADX67969.1| threonyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 640

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 158/437 (36%), Gaps = 40/437 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +  +G+  WLP G      +   + ++Q + G   +  P
Sbjct: 236 AKKRDHRKLGKELGLFA-FSEKVGQGLPLWLPKGAALRRKLENFLLKQQQKLGYEMVITP 294

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG +  +        +  +  P +     +I+++   SYR+LP 
Sbjct: 295 HIGQKELYVTSGHYAKYGADSFQPIQTPNEGEEFLLKPMNCPHHCEIYKTSQWSYRDLPK 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    +R E      G+ R R F   DA+ F  T +     + K+    L +F  LG
Sbjct: 355 RYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTSDQLLEEFKKVIDLVLFVFESLG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                  D    + +   D       +EN         N   
Sbjct: 414 FDNYSAQISLR--------------DPNNKEKYIGTDENWE--KAENAIITAAKEKNLPT 457

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
                  A      +  + D+L        R  ++G I      Y+LP     ++ G D 
Sbjct: 458 VVEHGEAAFYGPKLDFMVKDALG-------RQWQLGTI---QVDYNLPERFELSYIGPDN 507

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    A++  +  G   +W   + P   +++ I    +   +  E
Sbjct: 508 QAHRPVMIHRAPFGSMERFIAILLENTAGNLPLW---LTPDVFTILPI---SEKYVEFGE 561

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L++   +   D+  E+ G +   A++   P  +IVG K   +  V ++    G  
Sbjct: 562 KVLNLLAEQEINGLIDNRNEKTGKKIRDAEVKKIPYMLIVGEKEEENGTVSVRKHGEGDL 621

Query: 427 EDMSLEEVINYASHRFS 443
            +M +EE I +      
Sbjct: 622 GEMKIEEFIQFVKKEMK 638


>gi|329928815|ref|ZP_08282654.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328937458|gb|EGG33879.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 645

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 173/441 (39%), Gaps = 35/441 (7%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T       +G+  WLP G K    +   I + + R G 
Sbjct: 235 LRLLEEAKKRDHRKLGKELQMFT-FSQLVGQGLPIWLPNGAKLRRTLERYIVDMEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M    + +++ ++  P +      +++S + SYR
Sbjct: 294 QHVYTPVLGNVELYKTSGHWEHYQEDMFPKMEMDNEELVLRPMNCPHHMMVYKSDMHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ ++ R E+     G+ R R   + D++ F   P+  K  + ++    + ++
Sbjct: 354 DLPIRIAELGMQHRYEMSGALTGLHRVRAMTLNDSHIF-CRPDQIKEEFARVIQLIMTVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+     R                  D  +T+ +   D M         +  +  SL
Sbjct: 413 KDFGIHDYRFRLSYR--------------DPQDTEKYFQNDEMWEMSQRMLREVVE--SL 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L + + +S   ++    F    ++       + G 
Sbjct: 457 DMPFYEAEGEAAFYGPKLDVQIRTALGKEETLSTVQLD----FLLPERF----ELEYVGD 508

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H  V +    +G M    A +  +  G   +W   ++P ++ +I +        D 
Sbjct: 509 DGQKHRPVVIHRGILGTMERFTAFLLENFAGALPLW---LSPVQVKVIPV---SNAFEDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G  V  D   E++G +   A L   P   IVG    S   V ++ R  G
Sbjct: 563 AKEVAEKLQFAGISVEPDLRNEKLGYKIREAQLEKIPYMFIVGENEKSAGAVSVRKRGEG 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 L+E+I       + +
Sbjct: 623 DIGAQPLDEIILKLREEINTH 643


>gi|77918296|ref|YP_356111.1| prolyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|114152225|sp|Q3A6R6|SYP_PELCD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77544379|gb|ABA87941.1| prolyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 571

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + Y LP L+E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V  I+REE
Sbjct: 1   MRYTDYLLPTLKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +  ++LW ESGR++ YGKE+LR  DR D +   GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAMELLMPMVVPSELWEESGRWEHYGKELLRFTDRKDASFCLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  +Y KM+ +
Sbjct: 121 TVRSYRQLPLNLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDIDEAGADVAYEKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A++G IGG  SHEF+VLA +GE  +          
Sbjct: 181 YRRIFERCGLKFRAVEADTGNIGGSSSHEFMVLAASGEDAIVSCGQCEYAA 231



 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 67/182 (36%), Positives = 96/182 (52%), Gaps = 2/182 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              +  D  P         RGIEVGH+F  GTKYS  + AT     G+D  + MG YGIG
Sbjct: 384 RAAEAGDICPRCGGVLEIWRGIEVGHVFKLGTKYSAALGATVLDDQGQDRELFMGCYGIG 443

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VAA IE +HD  GI++P  +APF + +  +    +    A E +YA L  +G +V 
Sbjct: 444 VGRTVAAAIEQNHDENGIVFPMPIAPFHVLVTVVNPRQEEVLAAAENLYAELQALGVEVL 503

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+ GS+F  ADL+G PL++ VG++ + ++ VE++ R  G R  + L E       
Sbjct: 504 LDDRDERPGSKFKDADLIGIPLRLTVGARGLKENAVELQERAGGERRMLPLAEAAALVRD 563

Query: 441 RF 442
             
Sbjct: 564 MV 565


>gi|313899489|ref|ZP_07832999.1| threonine--tRNA ligase [Clostridium sp. HGF2]
 gi|312955777|gb|EFR37435.1| threonine--tRNA ligase [Clostridium sp. HGF2]
          Length = 579

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 158/442 (35%), Gaps = 40/442 (9%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD +    +L L   M+ + + G+  +LP G    + +     EE  +   
Sbjct: 174 LHLLEEAKKRDHKKLGRELGLF--MMSEFAPGMPFFLPNGMIIRNLLENFWYEEHTKENY 231

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S +LW  SG +++Y + M      +D+     P +      +F++ + SY+
Sbjct: 232 QFIKTPIMMSKELWEVSGHWENYKENMYTTMV-DDREFAIKPMNCPGSLLVFKNGLHSYK 290

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E      G+ R R F   DA+ F + P+  +    ++     R++
Sbjct: 291 DLPLRMGELGQVHRHEASGALNGLFRVRTFTQDDAHIF-MRPDQIESEVMQLIQFIDRVY 349

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL    +   + P                E +        +    +           
Sbjct: 350 SVFGLSYR-IELSTRP----------------EKKYIGDLAIWEQSEKALADACVHAGKD 392

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D H +              R  + G I             T+   
Sbjct: 393 YKVNPGDGAFYGPKLDFHIKDSLG----------REWQCGTI-QLDMNLPERFDLTYVEK 441

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG K   V +     G++     ++     G   +W   +AP ++S++ +  H +     
Sbjct: 442 DGSKVRPVMLHRVIFGSIERFIGILIEHFAGHFPVW---LAPQQVSVVPV--HHEKHLGY 496

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++ +L  +G     D   E++G +   A L   P Q+++G   + +  V ++   + 
Sbjct: 497 ANEVHEKLCALGFRSKLDARNEKLGYRIREAQLSKIPYQLVIGDGEIENRSVTLRRAQSR 556

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               MSL++ I          +
Sbjct: 557 ESITMSLDDFIAMMEKAVKEKK 578


>gi|261408878|ref|YP_003245119.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261285341|gb|ACX67312.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 645

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 173/441 (39%), Gaps = 35/441 (7%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T       +G+  WLP G K    +   I + + R G 
Sbjct: 235 LRLLEEAKKRDHRKLGKELQMFT-FSQLVGQGLPIWLPNGAKLRRTLERYIVDMEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M    + +++ ++  P +      +++S + SYR
Sbjct: 294 QHVYTPVLGNVELYKTSGHWEHYQEDMFPKMEMDNEELVLRPMNCPHHMMVYKSDMHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ ++ R E+     G+ R R   + D++ F   P+  K  + ++    + ++
Sbjct: 354 DLPIRIAELGMQHRYEMSGALTGLHRVRAMTLNDSHIF-CRPDQIKEEFARVIQLIMTVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+     R                  D  +T+ +   D M         +  +  SL
Sbjct: 413 KDFGIHDYRFRLSYR--------------DPQDTEKYFQNDEMWEMSQRMLREVVE--SL 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L + + +S   ++    F    ++       + G 
Sbjct: 457 DMPFYEAEGEAAFYGPKLDVQIRTALGKEETLSTVQLD----FLLPERF----ELEYVGD 508

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H  V +    +G M    A +  +  G   +W   ++P ++ +I +        D 
Sbjct: 509 DGQKHRPVVIHRGILGTMERFTAFLLENFAGALPLW---LSPVQVKVIPV---SNAFEDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G  V  D   E++G +   A L   P   IVG    +   V ++ R  G
Sbjct: 563 AKEVAEKLQFAGISVEPDLRNEKLGYKIREAQLEKIPYMFIVGENEKNAGAVSVRKRGEG 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 L+E+I       + +
Sbjct: 623 DIGAQPLDEIILKLREEINTH 643


>gi|313202757|ref|YP_004041414.1| ser-tRNA(thr) hydrolase; threonyL-tRNA synthetase [Paludibacter
           propionicigenes WB4]
 gi|312442073|gb|ADQ78429.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Paludibacter
           propionicigenes WB4]
          Length = 648

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 160/448 (35%), Gaps = 40/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      +L L         KG+  WLP G      +   +++ Q 
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKELELFM-FSEMVGKGLPMWLPRGTALRLRLEDFLKKIQR 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    ++  P + +  L+V SG Y  YGK+  +        +  +  P +     +I++ 
Sbjct: 287 RFDYQQVMTPHIGNKQLYVTSGHYAKYGKDSFQPIHTPEEGEEYLLKPMNCPHHCEIYKF 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKELPVRLAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLKVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               IF+ L  ++   +                  D    + +   D           + 
Sbjct: 406 IIFIIFNALEFENFEAQISLR--------------DPNNREKYIGSDENWEKAEQSIIEA 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                L +     T   A      +  + D++        R  ++G I      Y+LP  
Sbjct: 452 CAEKGLKA--RVETGEAAFYGPKLDFMVRDAIG-------RKWQLGTI---QVDYNLPER 499

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G D + H  V +     G+M    AV+     GK  +W   + P ++ ++ I  
Sbjct: 500 FELEYTGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQVVILPI-- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D   +I   ++     V  DD  E+IG +    +L   P  +IVG K   + +V
Sbjct: 555 -SEKFNDYAFQIAKEMNAQDIRVQVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENGEV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ +  G +  M + +          +
Sbjct: 614 SVRRQGEGDKGTMKVADFSKLILDEVDS 641


>gi|209969467|dbj|BAG80638.1| hypothetic protein [Streptococcus parauberis]
          Length = 395

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 167/423 (39%), Gaps = 35/423 (8%)

Query: 31  MI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI  +  +G+  WLP G      +   I +++  +G   +  P + S +L+  SG ++ Y
Sbjct: 1   MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPMASVELYKTSGHWEHY 60

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
            ++M    D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 61  QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 120

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D + F +TPE  +  + +     + ++    L     R           
Sbjct: 121 GLQRVREMTLNDGHLF-VTPEQIQEEFQRALQLIIDVYEDFNLTDYRFRLSYR------- 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D  +T  +   D M     +      D + ++    +     A      + ++
Sbjct: 173 -------DPKDTHKYYDNDEMWENAQAMLKAALDEMGVD--YFEAEGEAAFYGPKLDIQV 223

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM-RVVA 326
             +L   + +S   ++    F    ++       + GADG++H   M   G+ +      
Sbjct: 224 KTALGNEETLSTIQLD----FLLPERF----DLKYIGADGEEHRPVMIHRGVISTMERFT 275

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++  ++ G    W   +AP ++++I I   ++   D   ++   L   G     DD  E
Sbjct: 276 AILIETYKGAFPTW---LAPHQVTVIPIS--NEAHIDYAWEVAKTLRDRGIRADVDDRNE 330

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS-NN 445
           ++  +   +     P Q+IVG K + D  V ++   +      S+EE ++      +  +
Sbjct: 331 KMQYKIRASQTSKIPYQLIVGDKEMEDKAVNVRRYGSKATHTESIEEFVDNILADIARKS 390

Query: 446 RPV 448
           RPV
Sbjct: 391 RPV 393


>gi|312962836|ref|ZP_07777323.1| prolyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311282863|gb|EFQ61457.1| prolyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 571

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G K +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLKVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE ++D KGIIW D++APF+++L+ ++   
Sbjct: 424 KCEVLGENGKPITLDMGCYGIGVSRVVAAAIEQNNDDKGIIWSDALAPFQVALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 EQVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + + +V+++   R  
Sbjct: 544 EYKSRTEAEAQPLPVADVLSFLQARIR 570


>gi|296446450|ref|ZP_06888394.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296256085|gb|EFH03168.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 643

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 148/421 (35%), Gaps = 45/421 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G   W   G     ++ + +R  Q  
Sbjct: 232 YLHRLEE----AERRDHRRLGREMDLFHFQEEGPGTIFWHEKGWALFQSLVSYMRRRQKA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P +    LW  SG + +Y + M      +++     P +      IF++ +K
Sbjct: 288 AGYKEVNTPQVLDRALWETSGHWQTYRENMFLTKTEDERIFALKPMNCPGHVQIFKNGLK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R E      G+MR R F   DA+ F    +       K+    L
Sbjct: 348 SYRDLPVKIAEFGIVHRYEPSGALHGMMRVRAFTQDDAHIF-CNEDQIMEEALKINDLIL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   + ++  + P     S E    A+    +V                   D 
Sbjct: 407 TIYRDFGFDDVVVKLSTRPEKHVGSDEAWAKAEAALYKVL------------------DE 448

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +    +         A      E         +    R  + G        ++LP    A
Sbjct: 449 LKARGLKTGVNPGEGAFYGPKLEYTL------RDAIGREWQCGTT---QVDFNLPGRFGA 499

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D +    V +     G++     ++   + G   +W   ++P +I +  I    Q
Sbjct: 500 FYIGSDSEKKTPVMIHRAMFGSLERFTGILIEHYAGHLPLW---LSPLQIVVCTIT---Q 553

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++ A    VG  V  D   E+I  +     L   P+ ++VG K  ++  V I+
Sbjct: 554 DADDYAYEVAAEARNVGLAVDLDLRNEKITYKVREHSLAKVPVLLVVGKKEAAEHTVSIR 613

Query: 420 H 420
            
Sbjct: 614 R 614


>gi|15892219|ref|NP_359933.1| threonyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|22654126|sp|Q92IX4|SYT_RICCN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15619354|gb|AAL02834.1| threonyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
          Length = 635

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 157/440 (35%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-AEQITDETVSFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E    A+    +      F     P E   +   + 
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNEVWDKAENALKEAVEQAGFNYTLNPGEGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G    ++   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRL 610

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I      
Sbjct: 611 GTTDQEVLSVEQLIAVVKEE 630


>gi|315635289|ref|ZP_07890566.1| proline--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315476035|gb|EFU66790.1| proline--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 571

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSKYLLSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLQKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR +++ + GPT+EE +TD+ R 
Sbjct: 61  MNKSGAIEIKMPVVQPAELWQESGRWDQYGPELLRFTDRGERSFVIGPTNEEAITDLMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF +  E  + +Y  M+ +
Sbjct: 121 EVTSYRQLPLNLYHIQTKFRDEVRPRFGVMRSREFIMKDAYSFHMDKESLQQTYEVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFS 224



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSNAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DG+   V MG YGIG  RVVAA IE  HD +GIIWP D++APF ++++ +  H
Sbjct: 424 NATVQGEDGRPTVVTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDAMAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQAFAEELYRTLLAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R +G ++ ++  ++I++   +  
Sbjct: 544 EYKNRRSGEKQMIAKAQLIDFLKSQIK 570


>gi|163795474|ref|ZP_02189441.1| Threonyl-tRNA synthetase [alpha proteobacterium BAL199]
 gi|159179460|gb|EDP63991.1| Threonyl-tRNA synthetase [alpha proteobacterium BAL199]
          Length = 640

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 149/447 (33%), Gaps = 48/447 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++   +L +L+E    AE   H+ + R      I + + G   W P G      +   IR
Sbjct: 227 KQLDAYLHMLEE----AEKRDHRRLGRELDLFHIQEEAVGSVFWHPKGWTLYRVIENYIR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G  E+  P L    LW  SG +D + + M      +DK +   P +      ++
Sbjct: 283 GRLEEGGYREIKTPQLIDRALWEASGHWDKFREAMFTANAEDDKVLALKPMNCPGHVQVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R+E      G+MR R F   DA+ F    + +  S  + 
Sbjct: 343 KQGLKSYRDLPLRLAEFGSCHRNEPSGALHGIMRVRAFTQDDAHIFCTEDQITSESI-RF 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G + I ++    P            A+        +        P E  
Sbjct: 402 CDLLKSVYRDFGFEDIRIKFSDRPEVRAGEDAVWDRAEGALRSACDAAGLDTTLNPGEGA 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +                               +    R  + G        + LP
Sbjct: 462 FYGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDFVLP 491

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A +    G+    V +     G+M     ++   + G+  +W   ++P ++ +  I
Sbjct: 492 ERLDANYVAESGERKRPVMLHRAIFGSMERWIGILIEQYSGRFPMW---LSPLQVVVATI 548

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++ A     G  V  D   E+I  +         P  ++VG++     
Sbjct: 549 TND---ADGYAEEVAAACKAAGLRVAMDRRNEKINYKIREHSEAKVPAILVVGAREAEGR 605

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++      +E ++L++ ++     
Sbjct: 606 SVAVRRLGGQAQEVLALDDAVHRLKTE 632


>gi|330995385|ref|ZP_08319295.1| threonine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329575880|gb|EGG57404.1| threonine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 647

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 160/450 (35%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G      +   +++ 
Sbjct: 227 KMLDEYLTLLEEAKKRDHRKIGKEMELFM-FSERVGKGLPMWLPKGTALRLRLEDFLKKI 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  ++  P +   +L+V SG Y  YGK+  +       D+  +  P +     +I+
Sbjct: 286 QKRYGYQQVMTPHIGGKNLYVTSGHYAHYGKDSFQPIHTPEADEEYMLKPMNCPHHCEIY 345

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    +R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 346 AWKPRSYKDLPLRIAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFIRV 404

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 IF  L   +   +                  D    + +      D        
Sbjct: 405 MEIIQIIFGALNFDTFEAQISLR--------------DPNNREKYIGS---DEVWEEAEN 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +      +  +     AA      +         K    R  ++G I      Y+LP
Sbjct: 448 AIIEACKEKGLNAKVEYGEAAFYGPKLDF------MVKDALGRRWQLGTI---QVDYNLP 498

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G D + H  V +     G+M    AV+     G   +W   + P +++++ I
Sbjct: 499 ERFKLEYTGEDNQKHRPVMIHRAPFGSMERFCAVLIEHTAGHFPLW---LTPDQVAILPI 555

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D   K+ A   +       DD  E+IG +    ++   P  +IVG K  +D 
Sbjct: 556 ---SEKFNDYAHKLCAYFDERDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAADG 612

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ +  G +  M  E+     +    N
Sbjct: 613 TVSVRKQGEGDQGSMKFEDFAKKINEEVRN 642


>gi|198275235|ref|ZP_03207766.1| hypothetical protein BACPLE_01394 [Bacteroides plebeius DSM 17135]
 gi|198271818|gb|EDY96088.1| hypothetical protein BACPLE_01394 [Bacteroides plebeius DSM 17135]
          Length = 646

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 161/453 (35%), Gaps = 47/453 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 226 KMLDEYLVMLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + +  L+V SG Y  YGK+  +        +     P +      I+
Sbjct: 285 QARYDYQEVMCPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCMIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SYR+LP    +     R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 345 KNSPRSYRDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F  +GL++   +                  D    + +   D           
Sbjct: 404 MDIISIVFTSMGLENFEAQISLR--------------DKENREKYIGSDENWEKAEQAIV 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +  +   L                   E    +    K        +G  +  GT    Y
Sbjct: 450 EACEEKGL---------------KAKVEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 494

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      + G+D + H  V +     G+M    AV+     GK  +W   + P ++++
Sbjct: 495 NLPERFQLEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQVAI 551

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  +K+   L K       DD  E+IG +    ++   P  +IVG K  
Sbjct: 552 LPI---SEKFNDYADKVRMELKKYDVRALVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEA 608

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +V ++ +  G +  M +EE     +    N
Sbjct: 609 ENGEVAVRKQGEGDKGTMKIEEFAKNIAEEVHN 641


>gi|3617770|emb|CAA74705.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 709

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 162/447 (36%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+         HQ S G Y +LPLG +  + +   I+
Sbjct: 300 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 355

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +    G  E+  P + + +LW  SG  D+Y   M    +   +     P +      IF
Sbjct: 356 NQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIF 414

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  ++SYR LP       +  R+E      G+ R R F   DA+ F  T E  K     +
Sbjct: 415 QHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTT-EQVKGEVQGV 473

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     ++  + P       E    A+    +   +          +  
Sbjct: 474 LEFIDYVYKVFGFTY-ELKLSTRPEKYLGDLETWDKAEADLKEAIEAFGKPLVLNEGDG- 531

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D++    + +   ++    F    +++L 
Sbjct: 532 -------------------AFYGPKIDITVSDAMNRKFQCATLQLD----FQLPIRFNLE 568

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A  +    K   V +    +G++  + A++   + GK   WP  ++P +  +  I   
Sbjct: 569 YAA--EDEAKKSRPVMIHRAVLGSVERMFAILLEHYKGK---WPFWISPRQAIVCPISEK 623

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      EK+  ++   G  V  D    +I  +   A L  +   ++VG    +  +V 
Sbjct: 624 SQ---QYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVS 680

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R        S+E+++     + + 
Sbjct: 681 VRVRDNAAHSVKSIEDLLEEFKAKTAE 707


>gi|253988145|ref|YP_003039501.1| prolyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779595|emb|CAQ82756.1| prolyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 574

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGIRVLKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFADRGDRPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    + A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLAASGEDDIVFS 224



 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DDKHYFGINWERDLPIPEIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG +  + MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGHNQIITMGCYGIGVTRIVAAAIEQNHDNRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SYRVKEIAEKLYADLRACGIDVIFDDRKERPGVMFADMELIGVPHTIVIGDRNLDSGEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R    ++ + L+ V+++   + 
Sbjct: 546 YKYRRCDDKQMLKLDCVVDHLKQQL 570


>gi|332534597|ref|ZP_08410430.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035947|gb|EGI72427.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 574

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/225 (54%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR++ +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWNEFGPELMRFTDRHNRTFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF L+ E    +Y  M  +
Sbjct: 121 EISSYKQLPVTLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLSEECLDATYQAMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL   P+ A++G IGG LSHEF VLA++GE  +  S 
Sbjct: 181 YCNIFERLGLDYRPVLADTGSIGGSLSHEFHVLAESGEDAIAFSD 225



 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 104/206 (50%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I           +D+ N    D  P  +      RGIEVGHIF  GTKYS  M
Sbjct: 368 DDEHYSGINWDRDVTDYEVADIRNIVEGDMSPCGQGVLQIKRGIEVGHIFQLGTKYSEAM 427

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            A      GK+  + MG YGIG  R+VAA IE ++D  GIIWP S+APF ++++ +  H 
Sbjct: 428 KAGVLNEGGKNQTMTMGCYGIGVSRIVAAAIEQNNDQYGIIWPQSIAPFDLAIVPMNMHK 487

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    +Y  L   G DV +DD  E+ G  F   +L+G P  +++G + + ++KVE
Sbjct: 488 SHRIPDIANNLYQGLKDAGLDVLFDDRKERPGVMFNDMELIGVPFTLVIGERNLDENKVE 547

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +K+R TG +  + ++  I+       
Sbjct: 548 LKNRRTGEKLMIDIDTAIDAIKAAVK 573


>gi|58039289|ref|YP_191253.1| threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|73919795|sp|Q5FSP9|SYT_GLUOX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58001703|gb|AAW60597.1| Threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 645

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 152/440 (34%), Gaps = 44/440 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            L + +   RD      ++ L    I + + G   W   G +    +   +R  Q R   
Sbjct: 233 LLRLEEAEKRDHRRIGREMDLF--HIQEEAVGQIFWHRKGWRLYTVLQDYMRRAQERNNY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            E+  P L    LW  SG +D Y + M     +  DK +   P +      IFR  ++SY
Sbjct: 291 EEVRTPQLVDRALWEASGHWDKYRENMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + +  +  K       +
Sbjct: 351 RELPLRMAEFGACHRYEPSGALHGIMRVRGFTQDDAHIFCTDDQIADET-AKFVKMLAEV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LG  +  ++    P     S E    A+    +            P E   +   + 
Sbjct: 410 YSDLGFDTFRVKFSDRPETRAGSDEVWDRAEGSLKKACEIAGVEYEYNPGEGAFYGPKLE 469

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        Y LP  + A++
Sbjct: 470 FVLTD---------------------------AIGRDWQCGT---LQVDYVLPERLDASY 499

Query: 303 KGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D  +   V +    +G+      ++   + GK  +W   +AP ++ + +I +     
Sbjct: 500 IGEDSNRHRPVMLHRAILGSFERFIGILIEQYAGKFPLW---LAPTQVVVASIVSD---A 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++ A L   G  V  D   ++I ++     L   P+ ++VG +   + KV ++  
Sbjct: 554 ADYANEVAATLKAAGLQVETDTRSDKINAKIREHSLARVPVILVVGRREAEERKVAMRRL 613

Query: 422 LTGIREDMSLEEVINYASHR 441
               +E +SL++ +   +  
Sbjct: 614 GGAAQEILSLDDAVAALAKE 633


>gi|293611014|ref|ZP_06693313.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826666|gb|EFF85032.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 571

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFS 224



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 107/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A  +   D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 VNWERDAQISEIFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AESLYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 555

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 556 EASNLTKEELLAKLA 570


>gi|253999985|ref|YP_003052048.1| prolyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253986664|gb|ACT51521.1| prolyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 574

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 167/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+   +E P++AE+ SH+LMLR G+I +   G+Y+W+PLG + L  V  ++R+E
Sbjct: 1   MRASQFFIATQKEAPQEAELPSHRLMLRAGLIKRLGSGLYTWMPLGLRVLRKVETVVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR++++  +GPTHEEV+TD+ R 
Sbjct: 61  MNKAGALELLMPAVQPAELWQETGRWDVFGPQMLKITDRHERSFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHTSLESLEATYASMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  +F+RLGLK   +RA++G IGGD SHEF VLAD+GE  +   
Sbjct: 181 YSNVFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYC 224



 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 104/184 (56%), Gaps = 3/184 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGHIF   TKY+  M+AT++  +G+   ++MG YGIG
Sbjct: 391 RNVINGDPSPDGKGVLELCRGIEVGHIFQLRTKYAEAMNATYQAENGELKIMEMGCYGIG 450

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDV 379
             R+V A IE  +D +GII+P ++APF +++  I        +DA   +YA L + G DV
Sbjct: 451 VSRIVGAAIEQGNDARGIIFPAAMAPFSVAIAPIGMDRSDAVKDAALALYAELQQAGIDV 510

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD GE+ G  FA  +L+G P +V++G + + + +VE + R     + ++L E+++   
Sbjct: 511 LLDDRGERPGVMFADLELIGIPHRVVIGDRGLKEGQVEYQARTDEQAQSVALSEIVSKLK 570

Query: 440 HRFS 443
              +
Sbjct: 571 QALA 574


>gi|238751425|ref|ZP_04612917.1| Prolyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238710292|gb|EEQ02518.1| Prolyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 572

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLPLPQIADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNYDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYATLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E+I++   +  
Sbjct: 546 YKNRRAGEKQMIKTSEIIDFLLGQIK 571


>gi|282877699|ref|ZP_06286514.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281300271|gb|EFA92625.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 654

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 163/448 (36%), Gaps = 40/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y L + +   RD      ++ L      +  KG+  WLP G +    +  ++R+ Q 
Sbjct: 230 LDEYLLMLEEAKKRDHRKIGKEMELFM-FSDRVGKGMPIWLPKGTELRLRLQEMLRKIQK 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R G  E+  P + S +L+V SG Y  YGK+  +      +D+  +  P +     ++F  
Sbjct: 289 RFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEDDEEYMLKPMNCPHHCEVFAC 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +    +R E      G+ R R F   DA+ F   P+  K+ + ++  
Sbjct: 349 KPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIF-CRPDQVKNEFLRVMD 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +F      +   +                  D  + + +      D          
Sbjct: 408 IIQAVFTIFNFDNFEAQISLR--------------DPNDKEKYIGS---DEVWAESEQAI 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            +      +  +     AA      +         K    R  ++G I      Y+LP  
Sbjct: 451 IEACKEKGLDAKVAYGEAAFYGPKLDF------MVKDAIGRRWQLGTI---QVDYNLPQR 501

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   D  K   V +     G++    AV+     G   +W   + P +++++ I  
Sbjct: 502 FKLEYTAEDNTKQTPVMVHRAPFGSLERFTAVLIEHTAGHFPLW---LTPEQVAILPI-- 556

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      +++    ++       DD  E+IG +    +L   P  VIVG K  ++  V
Sbjct: 557 -SEKFNGYAQQVVKYFTEQDIRATIDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLV 615

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ +  G +  M +E+     ++  S 
Sbjct: 616 SMRKQGGGEQATMKMEDFAARINNEVSE 643


>gi|163760291|ref|ZP_02167374.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162282690|gb|EDQ32978.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 668

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 154/453 (33%), Gaps = 54/453 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R        +   G+  W   G K   N+ A +R     
Sbjct: 234 YLHMLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHSKGWKMFQNLLAYMRRRLE- 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
               E++ P +    LW  SG +  Y + M  +            + +++     P +  
Sbjct: 289 NDYEEVNAPQILDKSLWETSGHWGWYQENMFAVKSAHAFTNPDDEEADNRIFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E  +
Sbjct: 349 GHVQIFKHGLKSYRDLPVRLAEFGNVHRYEPSGALHGLMRVRAFTQDDAHVF-CTEEQLE 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               K+    + ++   G + + ++  + P     +      A+    +V          
Sbjct: 408 AECLKINDLMMSVYSDFGFEEVVVKLATRPEKRVGTDAMWDHAEDILRKVL--------- 458

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                 D     S   I                E         +    R  + G      
Sbjct: 459 ------DKMAAESGGRIKVGINEGEGTFYGPKFEYTL------RDAIGRDWQCGTT---Q 503

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A + GAD  K   V +     G++     ++  SH G   +W    AP +
Sbjct: 504 VDFNLPERFGAFYIGADSEKKQPVMVHRAICGSLERFLGILIESHAGHMPLW---FAPLQ 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +      D    +  RL   G  V  D   E+I  +     +   P+ ++ G 
Sbjct: 561 VVVATITS---EADDYGAAVAQRLRDAGLQVETDFRNEKINYKVREHSVAKVPVILVCGM 617

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +   +  V ++   +  +  MSL + I   +  
Sbjct: 618 REAEEQTVNVRRLGSRDQVSMSLADAIAKLAEE 650


>gi|238784905|ref|ZP_04628905.1| Prolyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238714222|gb|EEQ06234.1| Prolyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 572

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DDKHYFGINWERDLPLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNYDNRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYVTLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            KHR  G ++ +   E+I++   +  
Sbjct: 546 YKHRRAGEKQMIKTSEIIDFLLSQIK 571


>gi|329724705|gb|EGG61211.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 645

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 165/446 (36%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M        D+AM+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K    R                  D  +   +   D M     S   +  D
Sbjct: 407 QDVYKDFGFKDYRFRLSYR--------------DPEDKHKYFDDDEMWEKAESMLKEASD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 ELG--LTYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----DLT 502

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ + M    A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPMQVEIIPVNV--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L   G  V  DD  E++G +   A +   P Q++VG + V + +V ++ 
Sbjct: 558 HYDYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDQEVENQEVNVRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSEKQESVEKDEFIWNVIDEIRLKK 643


>gi|327398462|ref|YP_004339331.1| threonyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181091|gb|AEA33272.1| threonyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 620

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 163/443 (36%), Gaps = 41/443 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L + +  +   G+  W P G      +    R+E  + G
Sbjct: 216 YLKFLEEVKKRDHRKLGKQLDLFS-INDEVGPGLIIWHPKGAMLRYLIEEFERKEHLKRG 274

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    LW  SG +D Y + M    + +D++    P +      +++S  +SY
Sbjct: 275 YEFVKGPEILRTQLWKRSGHFDHYRENMY-FTEIDDQSFGIKPMNCLGHIQVYKSKKRSY 333

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  ++++ +  R E      G++R REF   DA+ F   P+        +      +
Sbjct: 334 RELPKRYFELGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPDQLNDEIIGVLNFVQDV 392

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +   +   + P     + +   LA         +          +         
Sbjct: 393 MDIFGFEY-ELEISTRPENSIGTDQQWELATNALINALKNTGREYDINEGDG-------- 443

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + KL D+L    + +    +    F    ++      T+  
Sbjct: 444 ------------AFYGPKIDVKLKDALGRKWQCATIQCD----FTLPERF----DLTYVD 483

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK+   V +    +G++    A++  +++G   +W   +AP ++ ++ +    +    
Sbjct: 484 EDGKEKQPVMVHRVILGSIERFIAILIENYEGDFPVW---IAPVQVRVLPV---SEKHEA 537

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y  L   G  V  ++  E +G +   A+    P  V+VG K + D  + ++ R  
Sbjct: 538 YAKDVYQTLKDRGIRVEIEERNETLGKKIRFAETDKVPYVVVVGDKEIEDKTISVRKRKE 597

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    M+++  I        + R
Sbjct: 598 GDLGCMNIDGFIERLQKEIDSRR 620


>gi|289207688|ref|YP_003459754.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943319|gb|ADC71018.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 570

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 122/233 (52%), Positives = 161/233 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G + + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRVSQFPLNTLKETPADAEIVSHQLMLRAGYVRRLAAGLYTWLPLGLRVLRRVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR+D YG E+LRL DR+++   +GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLMPAVQPAELWQESGRWDFYGAELLRLKDRHERDFCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  +YQIQ KFRDE RPRFG+MR+REFLMKDAYSF L  +    +Y +M  +
Sbjct: 121 EIRSYRQLPVNYYQIQTKFRDERRPRFGIMRAREFLMKDAYSFHLDADSLSRTYQQMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF R GL    + A++G IGG+ SHEF VLA +GE  +  S       + 
Sbjct: 181 YCRIFERCGLDFRAVEADTGAIGGNASHEFHVLASSGEDAIAFSPGGYAANVE 233



 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVGHIF  G KYS  + A     DG++  V MG YGIG  RVVAA IE + D +G
Sbjct: 403 IRRGIEVGHIFQLGDKYSQALGARVLDEDGREQVVTMGCYGIGVSRVVAAAIEQNSDERG 462

Query: 338 IIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I WP ++APF I+L  I     Q  R+A EK++  L   G  V  DD  ++ G  FA  +
Sbjct: 463 ICWPTAIAPFDIALCPIGAKKSQRVREAAEKLHDELEAAGFQVLLDDREQRPGVMFADME 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           L+G P ++++G + +   ++E + R     E + ++ +++    R  
Sbjct: 523 LIGIPHRLVIGERGLDAGELEYQARTASEAEHLPMDGLLDALRERLQ 569


>gi|238792729|ref|ZP_04636360.1| Prolyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238727837|gb|EEQ19360.1| Prolyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 572

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y ++F R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKVFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLPLPQIADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYATLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E+I++   +  
Sbjct: 546 YKNRRVGEKQMIKTSEIIDFLLGQIK 571


>gi|123968188|ref|YP_001009046.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166225480|sp|A2BQ78|SYT_PROMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123198298|gb|ABM69939.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 638

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 160/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  ++E    AE   H+ + +      I + S G+  W P G      +   IR
Sbjct: 226 KELKDYLTRIEE----AEKRDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E   +   +E+  P      LW +SG ++ +  +M   A  N +     P +      IF
Sbjct: 282 EILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTASEN-RTYAIKPMNCPCHIQIF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +  
Sbjct: 341 NQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIF-CTEEQIQEEVSTF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   I ++  + P     S +    ++   T+   +K+      P E  
Sbjct: 400 IDLVFEVYKTFGFDEIIIKLSTRPEKRVGSEDIWDKSEEALTKALDNKNLKWELQPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            K    R  + G I      +S+P
Sbjct: 460 FYGPKIEFSL---------------------------KDCLNRVWQCGTI---QVDFSMP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   D  K + V +    +G+      ++   ++ K  IW   +AP++I L++I
Sbjct: 490 IRLDATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIW---LAPYQIILLSI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +    + C K    ++  G     D   E+IG +   A L   PL  ++G K     
Sbjct: 547 TDRN---IEKCLKFNELINNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEID 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++          +L  +           
Sbjct: 604 SVALRALNGKNLGIFNLPNLFKLMDELIEKK 634


>gi|313674626|ref|YP_004052622.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Marivirga
           tractuosa DSM 4126]
 gi|312941324|gb|ADR20514.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Marivirga
           tractuosa DSM 4126]
          Length = 654

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 170/448 (37%), Gaps = 53/448 (11%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      ++ L      +   G+  WLP G    D +   +++ Q + G   +  P
Sbjct: 241 AKKRDHRKLGKEMELFA-FSEKVGLGLPLWLPKGTMLRDRLENFLKKAQVKAGYQPVITP 299

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            + + +L++ SG Y+ YGK+  R          ++D+  +  P +     +I+++  +SY
Sbjct: 300 HIGNKELYITSGHYEKYGKDSFRPIAAPSDDDSKSDEEYLLKPMNCPHHCEIYKTKPRSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+    L +
Sbjct: 360 KDLPLRLAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKEEFIKVIDLVLFV 418

Query: 185 FHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           F+ LG +    +     P   +       + D  E  +  +                   
Sbjct: 419 FNSLGFEDFVTQVSLRDPDNREKYIGGDEVWDKAEKSIIEAA------------------ 460

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--M 298
                                E    +    K        +G  +  GT    Y+LP   
Sbjct: 461 ------------EEKGLKTVIELGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERF 508

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + GAD  K   V +     G+M    AV+     G   +W   ++P +++++ I   
Sbjct: 509 KLEYVGADNSKHRPVMIHRAPFGSMERFVAVLIEHCAGNFPLW---LSPEQVAVLPI--- 562

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D   K+Y+ L       F D   E+IG +   A++   P  +IVG +  ++ KV 
Sbjct: 563 SEKYADYANKVYSELEANDITGFIDHRDEKIGRKIRDAEINKIPYMLIVGEQEAAEEKVS 622

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+    G   +MSLE+  ++ + + +++
Sbjct: 623 IRKHGEGDVGNMSLEDFKSFFNQKVTDS 650


>gi|144899402|emb|CAM76266.1| Threonyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 638

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 154/442 (34%), Gaps = 48/442 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R      + + + G   W   G      V + +R     
Sbjct: 233 YLHMLEE----AEKRDHRRLGREMNLFHLQEEAVGAVFWHQKGWALYRTVESYMRNRLEA 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P L    LW  SG  D + + M  +  ++++ +   P +      IFR  IK
Sbjct: 289 ENYQEVKTPQLVDFSLWEASGHADKFSESMFTIKTQDERHLAVKPMNCPCHVQIFRQGIK 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F  T +              
Sbjct: 349 SYRDLPLRMAEFGSCHRYEPSGALHGIMRVRAFTQDDAHIF-CTEDQITSETIAFCQLLK 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     S E    A++       +        P E   +   
Sbjct: 408 LVYQDFGFTDVRVKFSDRPEKRAGSDETWDKAESALLAAAQAAGLETTLNPGEGAFYGPK 467

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               +    R  + G        + LP  + A
Sbjct: 468 LEF---------------------------VLRDAIGRDWQCGT---LQVDFVLPERLDA 497

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++   DG +   V +    +G+      ++  +  G+  +W   ++P ++ +  I +   
Sbjct: 498 SYTAEDGSRRRPVMLHRAVLGSFERFIGILIENFAGRFPLW---LSPIQVVVATIVSD-- 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  + + A+L   G  V  D   E+I  + A       P+ ++VG +   +  V ++
Sbjct: 553 -ADDYAQSVAAKLRGAGLRVETDLRNEKINKKVAEHSNAKVPVLLVVGRREAEEGTVAVR 611

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              +  +E ++L++ +    + 
Sbjct: 612 RLGSQGQEFLALDQALATLVNE 633


>gi|119470323|ref|ZP_01613082.1| prolyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119446495|gb|EAW27770.1| prolyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 574

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR+  +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWSEFGPELMRFTDRHNREFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF L+ E   ++Y  M  +
Sbjct: 121 EVNSYKQLPLTLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLSEECLNNTYQAMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL   P+ A++G IGG +SHEF VLA++GE  +  S 
Sbjct: 181 YCNIFERLGLDYRPVIADTGSIGGSVSHEFHVLAESGEDAIAFSD 225



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 3/203 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I           +D+ N    D  P  +      RG+EVGHIF  GTKYS  M
Sbjct: 368 DDAHFSGINWDRDVTNYDVADIRNIVEGDPSPCGQGTLQIKRGVEVGHIFQLGTKYSEAM 427

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            A     DGK+  + MG YG+G  R+VAA IE ++D  GIIWP S+APF ++++ +  H 
Sbjct: 428 KAGVLNEDGKNQVMTMGCYGVGVSRIVAAAIEQNNDKYGIIWPQSIAPFDLAIVPMNMHK 487

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    +Y  L   G DV +DD  E+ G  F   +L+G P  +++G + + ++KVE
Sbjct: 488 SHRIPDIANSLYQGLKDAGVDVLFDDRKERPGVMFNDMELVGVPFTLVIGERNLDENKVE 547

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           +K+R TG +  + ++  I     
Sbjct: 548 LKNRRTGEKLMIDIDTAIESIKA 570


>gi|238796636|ref|ZP_04640143.1| Prolyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238719614|gb|EEQ11423.1| Prolyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 572

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 366 DDKHYFGINWERDLPLPQVADLRNVVEGDISPDGQGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNYDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYATLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            KHR  G ++ +   E+I +   +  
Sbjct: 546 YKHRRAGEKQMIKTSEIIEFLLSQIK 571


>gi|154490252|ref|ZP_02030513.1| hypothetical protein PARMER_00484 [Parabacteroides merdae ATCC
           43184]
 gi|154089144|gb|EDN88188.1| hypothetical protein PARMER_00484 [Parabacteroides merdae ATCC
           43184]
          Length = 651

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 158/452 (34%), Gaps = 48/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T        G+  WLP G +    +   ++  Q 
Sbjct: 228 LDEYLALMEEAKKRDHRKIGKELELFT-FSTAVGAGLPLWLPRGTQLRLKLEDFLKRIQK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +    L+V SG Y  YGK+  +        +  +  P +     +IF+S
Sbjct: 287 KYGYQQVMTPHIGGKQLYVTSGHYAKYGKDSFQPIHTPQEGEEFLLKPMNCPHHCEIFKS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 FPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQLKDEFLKVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               IF  L  ++   +      +  D         +  E+ +  +              
Sbjct: 406 IIFIIFKALDFENFEAQISLRDKVNRDKYIGSEENWEKAESAIIEACQEKGLKAK----- 460

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
                                     E    +    K        +G  +  GT    Y+
Sbjct: 461 -------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYN 495

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + G D K H  V +     G+M    AV+     GK  +W   + P +++++
Sbjct: 496 LPERFELEYTGEDNKKHRPVMIHRAPFGSMERFVAVLIEHTGGKFPLW---LTPDQVAIL 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +   D   ++  +L      V  DD  E+IG +    +L   P  +IVG K   
Sbjct: 553 PI---SEKFNDYAYEVKRQLEAEDLSVLVDDRNEKIGRKIRDTELKRIPYMLIVGEKEAE 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++V ++ +  G +  M +            +
Sbjct: 610 NNEVSVRKQGEGDKGSMKITTFAALLKGEVED 641


>gi|291486342|dbj|BAI87417.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 638

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 157/441 (35%), Gaps = 42/441 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 235 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 NEVRTPFMMNQRLWEQSGHWDHYRDNMY-FSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F +  +  +    +       ++
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIF-VREDQIESEIKEAIRLIDEVY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P     +      ++    +V             +          
Sbjct: 411 RTFGFEY-SVELSTRPEDSLGNDSLWEASERALARVLEELGLSYEINEGDG--------- 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                      A      +  + D+L  + + +   ++    F    K+      T+   
Sbjct: 461 -----------AFYGPKIDFHIKDALKRSHQCATIQLD----FQMPEKF----DLTYINE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +     G++     ++   + G   +W   +AP ++ +I +     V  D 
Sbjct: 502 HNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVW---LAPLQVQIIPV---SHVHLDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++     
Sbjct: 556 CRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGHQ 615

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E +  +   +    +  N 
Sbjct: 616 QSEHVPFQTFKDKLVKQVENR 636


>gi|313201958|ref|YP_004040616.1| prolyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312441274|gb|ADQ85380.1| prolyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 574

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 167/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+   +E P++AE+ SH+LMLR G+I +   G+Y+W+PLG + L  V  ++R+E
Sbjct: 1   MRASQFFIATQKEAPQEAELPSHRLMLRAGLIKRLGSGLYTWMPLGLRVLRKVETVVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR++++  +GPTHEEV+TD+ R 
Sbjct: 61  MNKAGALELLMPAVQPAELWQETGRWDVFGPQMLKITDRHERSFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHTSLESLEATYATMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  +F+RLGLK   +RA++G IGGD SHEF VLAD+GE  +   
Sbjct: 181 YSNVFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYC 224



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 104/184 (56%), Gaps = 3/184 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGHIF   TKY+  M+AT++  +G+   ++MG YGIG
Sbjct: 391 RNVINGDPSPDGKGVLELCRGIEVGHIFQLRTKYAEAMNATYQAENGELKIMEMGCYGIG 450

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDV 379
             R+V A IE  +D +GII+P ++APF +++  I        +DA   +YA L + G DV
Sbjct: 451 VSRIVGAAIEQGNDARGIIFPAAMAPFSVAIAPIGMDRSDAVKDATLALYAELQQAGIDV 510

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD GE+ G  FA  +L+G P +V++G + + + +VE + R     + ++L E+++   
Sbjct: 511 LLDDRGERPGVMFADLELIGIPHRVVIGDRGLKEGQVEYQARTDEQAQSVALSEIVSKLK 570

Query: 440 HRFS 443
              +
Sbjct: 571 QALA 574


>gi|218782046|ref|YP_002433364.1| threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|226701455|sp|B8FN26|SYT_DESAA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218763430|gb|ACL05896.1| Threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 636

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 162/451 (35%), Gaps = 42/451 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +L+E   RD       L L +   H+ + G+  +   G +  + + A  REE
Sbjct: 222 KELKSYLHLLEEAKKRDHRKLGTALDLFS--FHEEAAGMPFFHARGMELWNALLAYWREE 279

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G +E   P + +  LW  SG +++Y + M   +   D      P +      ++++
Sbjct: 280 HKKAGYVETKTPIMLNKSLWERSGHWENYRENMYT-SLIEDFDYAIKPMNCPGGMLLYKT 338

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY +LP    +I L  R EL     G+ R R F   DA+ F +T E  +     +  
Sbjct: 339 KHHSYNDLPIRAGEIGLVHRHELSGVLSGLFRVRAFHQDDAHIF-MTEEMIEDEILGVLQ 397

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              R++   GL    +   + P     + E    A  G       K   D+ I   +  F
Sbjct: 398 LVERMYSTFGLGF-HLELSTRPEKTIGTDEQWEKATEGLRAAL-DKSGRDYKINEGDGAF 455

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I                          K    R  + G I            
Sbjct: 456 YGPKIDIHI--------------------------KDALGRTWQCGTI-QLDMNLPERFD 488

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ GAD + H  V +     G++     ++   + GK  +W   ++P +  ++ +    
Sbjct: 489 LTYVGADNQRHRPVMIHRVIYGSIERFLGILIEHYAGKFPLW---LSPCQAVVLAMNDD- 544

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +++ ARL + G  +  D   E I  +   A L   PL + VG K  +   + +
Sbjct: 545 --VAGYAKEVKARLEEAGLRMEIDLRAESINKKVRDAQLSKIPLMLTVGGKEEAAQTLAV 602

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +     ++  ++++  ++          P L
Sbjct: 603 RTLDGKVKYGVTIDNFLDKVLPHIETRNPDL 633


>gi|77164649|ref|YP_343174.1| threonyl-tRNA synthetase, class IIA [Nitrosococcus oceani ATCC
           19707]
 gi|123757888|sp|Q3JC02|SYT_NITOC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|76882963|gb|ABA57644.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Nitrosococcus
           oceani ATCC 19707]
          Length = 644

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 157/441 (35%), Gaps = 39/441 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD       L L + +  +   G+  W P+G +    +    +E 
Sbjct: 226 KALKAYLHRLEEAEKRDHRRIGADLDLFS-IQEEAGGGLVFWHPMGARIRRVIEDFWQER 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G   +  P +   +LW  SG  D Y + M +  + + +     P +      I++ 
Sbjct: 285 HTAAGYEMLYTPHIAHEELWQTSGHTDFYRESMYQPMEDDHQLYQLKPMNCPFHVLIYQG 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP  + ++   +R E+     G+MR R F   DA+ F    E  ++    +  
Sbjct: 345 RLRSYRELPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIF-CREEQIENEILGILD 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +    G     +   + P            A          K              
Sbjct: 404 LTLEMLAAFGFDRYEIDLSTRPEKSVGPEAIWEQATQALRSALDKKGLDYAVDEGGG--- 460

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    + S   ++    F    ++++   
Sbjct: 461 -----------------AFYGPKIDIKIEDAIGRKWQCSTVQLD----FNLPERFAM--- 496

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   DG  H  + +    +G++     V+   ++GK    P  +AP ++ +++I    
Sbjct: 497 -EYVAEDGARHRPIMIHRAVLGSLERFFGVLIEHYEGKF---PPWLAPVQVVVMSITDRQ 552

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   +   G     D   E+IG +     L   P  +++G + V++  V +
Sbjct: 553 EG---YARQVEEAMRNKGFRSLLDLRNEKIGFKIREHILRRIPYLLVIGDREVANQTVAV 609

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           + R +     MSL+  + + S
Sbjct: 610 RTRYSQDLGAMSLDAFMEHLS 630


>gi|157828174|ref|YP_001494416.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166225494|sp|A8GR83|SYT_RICRS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157800655|gb|ABV75908.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 635

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 157/440 (35%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-AEQITDETVSFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E    A+    +      F     P E   +   + 
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNEVWDKAENALKEAVEQAGFTYTLNPGEGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G    ++   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRL 610

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I      
Sbjct: 611 GTTDQEVLSVEQLIAVVKEE 630


>gi|309776920|ref|ZP_07671890.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915331|gb|EFP61101.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 580

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 153/433 (35%), Gaps = 40/433 (9%)

Query: 18  AEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           A+   HK + R     M+ +++ G+  +LP G    + +     EE  +     +  P +
Sbjct: 180 AKKRDHKKLGRELGLFMMSEYAPGMPFFLPNGMIIRNLLENFWYEEHTKENYQFIKTPIM 239

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            S +LW  SG +++Y + M      +D+     P +      +F++ + SY++LP    +
Sbjct: 240 MSKELWEVSGHWENYKENMYTTMV-DDREFAIKPMNCPGSLLVFKNGLHSYKDLPLRMGE 298

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +    R E      G+ R R F   DA+ F + P+  +    ++     R++   GL   
Sbjct: 299 LGQVHRHEASGALNGLFRVRTFTQDDAHIF-MRPDQIEGEVMRLIQFIDRVYSVFGLSYR 357

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   + P                E +        +    +             +     
Sbjct: 358 -IELSTRP----------------EKKYIGDLAIWEQSEKALADACVHAGKEYKVNPGDG 400

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYV 312
           A Y    D H +              R  + G I             T+   DG K   V
Sbjct: 401 AFYGPKLDFHIKDSLG----------REWQCGTI-QLDMNLPERFDLTYVEKDGSKVRPV 449

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +     G++     ++     G   +W   +AP ++S++ +  H +   +   ++  +L
Sbjct: 450 MLHRVIFGSIERFIGILIEHFAGHFPVW---LAPQQVSVVPV--HHEKHLEYANEVNEKL 504

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +G     D   E++G +   A L   P Q+++G   + +  V ++   +     M LE
Sbjct: 505 LALGYRSKLDARNEKLGYRIREAQLSKIPYQLVIGDGEIENGSVTLRRAQSKKSLTMPLE 564

Query: 433 EVINYASHRFSNN 445
           + I   +      
Sbjct: 565 DFIAMMNSAVEEK 577


>gi|293390782|ref|ZP_06635116.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951316|gb|EFE01435.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 571

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLLSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSQAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKA- 356
           +AT +G DG+   V MG YGIG  RVVAA IE  HD +GIIWP D++APF ++++ +   
Sbjct: 424 NATVQGEDGRPMVVTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDAIAPFTVAIVPMNMY 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E +Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFAEDLYRTLQAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++  +++++   + +
Sbjct: 544 EYKNRRTGEKQMIAKAQLLDFLKSQIN 570


>gi|303237224|ref|ZP_07323794.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482611|gb|EFL45636.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 649

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 160/458 (34%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD       + L      +  KG+  WLP G +    +  ++R+ 
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKDMELFM-FSERVGKGLPIWLPKGTQVRLRLQEVLRKL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q      E+  P +   +L+V SG Y  YGK+  +        +  +  P +     +IF
Sbjct: 287 QRPYHYQEVITPGIGGKNLYVTSGHYAHYGKDAFQPIQTPEEGEEYMLKPMNCPHHCEIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + PE  K  +  +
Sbjct: 347 AHKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHLF-VRPEQVKKEFEDV 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                ++F   G ++   +                  D  + + +               
Sbjct: 406 IDIIQKVFITFGFENYEAQISLR--------------DPDDKEKYIGS------------ 439

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
              D I   S      A          E    +    K        +G  +  GT    Y
Sbjct: 440 ---DEIWEESERAIKEACEEKGLKARVEIGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPNRFKLEYTAEDNTKQTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +      E++ A           DD  E+IG +    +L   P  VIVG + +
Sbjct: 554 LPI---SEKYNGYAEEVRAYFEANEVRAIVDDRNEKIGRKIRDNELKRVPYMVIVGEQEM 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +D  V ++ +  G +  M  E+ +    +  +     L
Sbjct: 611 ADGLVSMRQQGGGEQATMPKEDFVKRIQNEVAEQLKNL 648


>gi|57867165|ref|YP_188820.1| threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811076|ref|ZP_04825549.1| threonyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875897|ref|ZP_06284764.1| threonine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|71153576|sp|Q5HNM1|SYT_STAEQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57637823|gb|AAW54611.1| threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805411|gb|EES58068.1| threonyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294922|gb|EFA87449.1| threonine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 645

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 164/446 (36%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M        D+AM+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +    R                  D  +   +   D M     S   +  D
Sbjct: 407 QDVYKDFGFEDYRFRLSYR--------------DPEDKHKYFDDDEMWEKAESMLKEASD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 ELG--LTYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----DLT 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPMQVEIIPVNI--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L   G  V  DD  E++G +   A +   P Q++VG + V + +V ++ 
Sbjct: 558 HYDYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDQEVENQEVNVRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSEKQESVEKDEFIWNVIDEIRLKK 643


>gi|261867437|ref|YP_003255359.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412769|gb|ACX82140.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 571

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLLSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKIADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSQTM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKA- 356
           +AT +G DG+   V MG YGIG  RVVAA IE  HD +GIIWP D++APF ++++ +   
Sbjct: 424 NATVQGEDGRPMVVTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDAIAPFSVAIVPMNMY 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E +Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFAEDLYRTLQAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++  +++++   + +
Sbjct: 544 EYKNRRTGEKQMIAKAQLLDFLKSQIN 570


>gi|149276293|ref|ZP_01882437.1| threonine--tRNA ligase (threonine tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149232813|gb|EDM38188.1| threonine--tRNA ligase (threonine tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 641

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 161/446 (36%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I +   RD      +L L      +   G+  WLP G    + +   +   Q 
Sbjct: 228 LTEYLHMIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGAALRERLVQFLTRAQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           ++G  ++  P +   +L++ SG Y+ YGK+  +     +  +     P +     +I++ 
Sbjct: 287 KSGYEQVVTPHIGHKNLYITSGHYEKYGKDSFQPIKTPQEGEEFFLKPMNCPHHCEIYKV 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG      +                  D      +   D       S   + 
Sbjct: 406 LVLYVFKSLGFNDYIAQVSLR--------------DPDNKAKYIGSDENWQLAESAIIEA 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                L ++VE   A +                  K    R  ++G I      Y+LP  
Sbjct: 452 AAEKGLPTVVEYGEAAFYGPKLDF---------MVKDALGRKWQLGTI---QVDYNLPER 499

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G+D  K   V +     G++    AV+     G   +W   ++P +  ++ I  
Sbjct: 500 FELEYTGSDNLKHRPVMIHRAPFGSLERFIAVLIEHCAGNFPLW---LSPEQFIILPI-- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D  +K+   L+        D   E+IG +   A++   P  +I+G K +++ KV
Sbjct: 555 -SEKYEDYAKKVSDELNNSDIRGLIDFRDEKIGRKIRDAEVKKIPYMLIIGEKEMAEGKV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++    G    M+ +E         
Sbjct: 614 SVRKHGEGDLGAMTQQEFSELLIKEI 639


>gi|305664643|ref|YP_003860930.1| threonyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88707344|gb|EAQ99590.1| threonyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 646

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 165/449 (36%), Gaps = 49/449 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +  +G+  WLP G    + +   +++ Q + G
Sbjct: 231 YLQLLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLEQFLKKAQKKAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG++  +     ++D+  +  P +     +I+ S   
Sbjct: 290 YEMVVTPHIGQKELYVTSGHYAKYGEDSFQPIHTPKDDEEFLLKPMNCPHHCEIYNSRPF 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +    L
Sbjct: 350 SYRELPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDQEFKDVIDLSL 408

Query: 183 RIFHRLGLKSIPMRAESG----PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +   LG ++   +        P     S E    A+         K   DF + S    
Sbjct: 409 YVLSSLGFENFKAQVSVRDLDTPEKYIGSVENWEKAENAIINAAKEKGL-DFVVESGEAA 467

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           F        +                          K    R  ++G I      Y+LP 
Sbjct: 468 FYGPKLDFMV--------------------------KDALGRNWQLGTI---QVDYNLPE 498

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+KG+D + H  V +     G+M    A++     G   +W   + P +  ++ + 
Sbjct: 499 RFDLTYKGSDNESHRPVMIHRAPFGSMERFVALLLEHTGGNFPLW---LIPEQAIILPVS 555

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      EK+   L         D+  E +G +   A++   P  +IVG     ++ 
Sbjct: 556 EKHEK---YAEKVLNSLENNEIRALIDNRNETVGKKIREAEMGKLPFMLIVGESEEENNT 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + ++         ++++  ++  +   ++
Sbjct: 613 IAVRRHGGEDIGSINVQAFVDLVTKEINS 641


>gi|313673284|ref|YP_004051395.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940040|gb|ADR19232.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 640

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 151/433 (34%), Gaps = 38/433 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L  G   +   G+  W+P G K    +    R E  
Sbjct: 226 LDEYLNRLEEAKKRDHRRLGKELELF-GTFDEIGSGLICWMPKGAKVRATIEEFWRREHF 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  ++LW  SG  D Y + M    D   +     P +      I++S  
Sbjct: 285 KNGYDLLYTPHIGKSNLWQTSGHLDFYSENMYSPMDIEGQNYYIKPMNCPFHIMIYKSKN 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  + ++   +R E      G++R R F   DA+      +       ++    
Sbjct: 345 RSYRDLPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHIICA-QDQIVEEIEEVLKFS 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I+   G  SI     + P            A     +                     
Sbjct: 404 LDIWKTFGFTSIKGYIATRPEKSVGDDSMWKAATDSLMESIKKSGIEYEIDEGGG----- 458

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D++    +++    +    F    ++       
Sbjct: 459 ---------------AFYGPKIDLKVKDAIGREWQMTTIQFD----FNLPERF----DMV 495

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DGK+     +    +G++     V+   + G    W   +AP +I ++NI      
Sbjct: 496 YVDRDGKEKRPYMVHRALLGSLERFFGVLIEHYAGAFPFW---LAPVQIKIMNI---SDE 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D CE++Y RL   G  V  D   E+IG +   A L   P  +++G++    + V ++ 
Sbjct: 550 QADYCEQLYRRLKAEGFRVEMDLRNEKIGYKIREAQLFKVPHMIVIGNQEKEKNHVSVRL 609

Query: 421 RLTGIREDMSLEE 433
           R    + ++   E
Sbjct: 610 RNGETKNNLDFSE 622


>gi|308048689|ref|YP_003912255.1| prolyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307630879|gb|ADN75181.1| prolyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 570

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  ++E P DAEI SH+LM+R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQTLISTMKETPSDAEIVSHQLMMRAGMIRKLAAGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E  +P +Q ADLW E+GR+D  G EM RL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGAVETLMPVVQPADLWQETGRWDDMGAEMARLKDRHDRDFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFGVMR+REFLMKDAYSF L  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPINLYQIQTKFRDERRPRFGVMRAREFLMKDAYSFHLDQETMDETYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RI  R+GL   P+ A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCRILERMGLAYRPVLADTGAIGGSHSHEFQVLAQSGEDAIAYS 224



 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/180 (38%), Positives = 109/180 (60%), Gaps = 1/180 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E             ARGIEVGHIF  GTKYS  M+AT    +GK   + MG YG+G  R+
Sbjct: 391 EGDLSPCGNGTLKIARGIEVGHIFQLGTKYSESMNATVLDPNGKATPLIMGCYGVGVSRI 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDD 383
           VAA IE +HD +GIIWPD++AP++++++ +  H      +  EK+YA L+  G +V +DD
Sbjct: 451 VAAAIEQNHDDRGIIWPDAIAPYQVAILPMNMHKSHRVAELAEKLYAELTAAGIEVLFDD 510

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G  FA  +L+G P  +++G + + D  VE K R TG + ++++++V+ +   +F+
Sbjct: 511 RKERPGVMFADHELIGIPHTIVIGDRGIDDGNVEYKVRKTGEKSELAIDQVVEFFKGKFA 570


>gi|51893696|ref|YP_076387.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|73919833|sp|Q67LA3|SYT_SYMTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51857385|dbj|BAD41543.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 651

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 161/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G   WL  G +    +    R+ Q   G
Sbjct: 234 YLFRLEEARRRDHRRLGPELGLYR--FEEVAPGFAFWLDKGYRLYRELENWSRKLQEARG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S+ L+  SG +  Y + M  +    D+     P +      +++S I+SY
Sbjct: 292 YEEVSTPWIVSSKLYETSGHWQHYRQNMFEIRAE-DQDFATKPMNCPCHCVLYKSQIRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F + P+  +    ++      I
Sbjct: 351 RDLPLKIAEYGPLSRFEASGTLHGLLRVRGFHQDDAHLF-VRPDQIEEQIREVIGLVDTI 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LGL+   ++  + P       E    A+    +            P +   +   + 
Sbjct: 410 YGTLGLEY-EIKLSTRPEDFMGDIELWNEAEAALARALDGMGRSYKLNPGDGAFYGPKLD 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +                      D+L    + +   ++    F    K+      T+ G
Sbjct: 469 FDVT--------------------DALGRKWQCATVQLD----FQLPIKF----DLTYIG 500

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK+H  V +    +G +     ++   + G   +W   +AP +  ++ I         
Sbjct: 501 EDGKEHRPVMIHRAIMGTLERFIGILTEHYAGNFPLW---MAPVQARVLPIT---DRHHA 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A+L + G  V  D   E++G +   A+LL  P  ++VG K      V ++ R  
Sbjct: 555 YAGEVVAKLQEAGLRVEGDYRNEKVGYKIREAELLKIPFILVVGDKEAEAGAVAVRRRGM 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L + +  A    ++ 
Sbjct: 615 KDLGPMPLADFLALAQSEIASK 636


>gi|304396668|ref|ZP_07378549.1| prolyl-tRNA synthetase [Pantoea sp. aB]
 gi|304356177|gb|EFM20543.1| prolyl-tRNA synthetase [Pantoea sp. aB]
          Length = 572

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAVEILMPVVQPADLWQESGRWEEYGPELLRIADRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQASLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSQIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS 224



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A+ +D+ N    D  P+ K      RGIEVGHIF  GTKYS  +
Sbjct: 366 DGKHYFGINWERDLPLASVADIRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +    
Sbjct: 426 KASVQGEDGRNQVMSMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SFRVKELAEELYATLRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R  G ++ +  +E++ +     + 
Sbjct: 546 YKSRRAGEKQMIKQDEIVEFLLKALNK 572


>gi|303326973|ref|ZP_07357415.1| proline--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302862961|gb|EFL85893.1| proline--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 580

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 122/256 (47%), Positives = 165/256 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P DAE+ SHKL+LR GM+ + + G+Y +LPLG K +D +  ++REE
Sbjct: 1   MRFSSCYIPTLKESPADAEVVSHKLLLRAGMVRRLTSGLYIYLPLGLKIIDKIARVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +G  E+ +P +Q ADLW E+GR++ YGKE+LR  DRN++    GPTHEEV+TD+ R 
Sbjct: 61  INASGFQELLMPMVQPADLWKETGRWEHYGKELLRFKDRNERDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD    G++ SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQIQSKFRDEIRPRFGLMRGREFMMKDGYSFDADIAGAEESYKLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGLK   + A++G IGG+ SHEF+VLADTGE  +    D              
Sbjct: 181 YTRIFKRLGLKFRAVEADTGSIGGNFSHEFMVLADTGEDTIAFCHDCDYAANVERAEVVW 240

Query: 241 DIISLNSIVEQWTAPY 256
              +           Y
Sbjct: 241 KGEACTEACAGACPDY 256



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 98/174 (56%), Gaps = 2/174 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+      D  P         +GIEVGHIF  G KYS  M A F   +GK+  + MG 
Sbjct: 383 WADLRAITPEDVCPRCGGRIELTKGIEVGHIFMLGLKYSESMHAAFLDENGKEKLMIMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  RV AA IE +HD  GI++P  VAPF+  L+N+   +       E+IYA L  +G
Sbjct: 443 YGIGVSRVAAAAIEQNHDENGIVFPPPVAPFECILLNLDPRNAEVTAKAEEIYAMLRDMG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            DV  DD  E+ G +F  ADLLG P+Q++VG K ++   VE K R +G + ++S
Sbjct: 503 VDVLLDDREERPGVKFKDADLLGAPMQLVVGGKGLARGIVECKDRRSGEKGELS 556


>gi|160880797|ref|YP_001559765.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160429463|gb|ABX43026.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 584

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 165/440 (37%), Gaps = 42/440 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L   +E   RD      +L L T M  +   G   +LP G    + +    R+   R
Sbjct: 182 EVYLKQQEEAKLRDHRKLGKELELFTFM--EEGPGFPFFLPKGMVIKNLLLDYWRKLHER 239

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + + +LW  SG +D Y + M +    +D+     P +      ++ S  +
Sbjct: 240 EGYVEISTPMMLNRNLWETSGHWDHYKENMYQTK-IDDEIYAIKPMNCPGGMLVYGSKPR 298

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP  F ++ L  R E   +  G+MR R F   DA+ F +T E  K     +     
Sbjct: 299 SYKELPLRFGELGLVHRHEKSGQLHGLMRVRCFTQDDAHLF-MTEEQIKDEIKGVVRLID 357

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G     +   + P     S E   +A           +        +       
Sbjct: 358 EVYKKFGFTY-HVELSTRPENSIGSLEDWEIATDALKMALEEMELPYLINEGDG------ 410

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      +  L DS+    +  +  ++    F    ++       +
Sbjct: 411 --------------AFYGPKIDFHLKDSIGRTWQCGSIQLD----FQLPLRF----GIEY 448

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H  + +     G++     ++   + G+   W   +AP ++ ++ +    +  
Sbjct: 449 IGADGEAHRPIMIHRVIFGSIERFFGILIEHYAGRFPTW---LAPVQVKILTV---SEQF 502

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + I   L + G  V  D   E++G +   A L   P  +I+G   + + +V + +R
Sbjct: 503 NDYAQDILMELKQQGIRVSLDSRSEKLGYKVREARLDKIPYVLIIGQMEMENKQVSVWNR 562

Query: 422 LTGIREDMSLEEVINYASHR 441
             G      +E++I+     
Sbjct: 563 EEGDLGGYVVEDLISLIKKE 582


>gi|330877991|gb|EGH12140.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 412

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225


>gi|67920215|ref|ZP_00513735.1| Threonyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
 gi|67857699|gb|EAM52938.1| Threonyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
          Length = 642

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 156/443 (35%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I +    G+  W P G K    +    R+     
Sbjct: 234 YLKQREEAKRRDHRKLGKELKLFS--IQENAGGGLVFWHPRGAKMRYVIEDYWRKAHLDG 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG +D Y + M       ++A    P +       +++ + S
Sbjct: 292 GYELLYTPHVANLDLWKTSGHFDFYRENMFDSMKIEEQAYQIKPMNCPFHVLTYKNELHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F L P         +     +
Sbjct: 352 YREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHVFCL-PTQIASEILGVLNLTEK 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K   +   + P     + E   LA     +    K +                
Sbjct: 411 ILSDFGFKDYEVNLSTRPDKSVGTDEGWELATQALVEALNGKGWDYIEDKGGG------- 463

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++       + 
Sbjct: 464 -------------AFYGPKIDIKIKDAIGRTWQCSTIQVD----FNLPERF----DMEYV 502

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +   + +     G++     ++  ++ G   +W   +AP ++ L+ +    +   
Sbjct: 503 AVDGSRQRPIMIHRAIFGSLERFYGILIENYAGDFPLW---LAPIQLRLLPV---SEAQI 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E + A L + G  V  D  GE++G Q   A+L   P+  IVG K V    + I+ R 
Sbjct: 557 EYGETVVATLKQAGYRVEIDCTGERLGKQIRNAELEKIPVVAIVGKKEVETQTLSIRTRQ 616

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    M+L E+        +N 
Sbjct: 617 QGDIGTMTLTELKESFKSAITNK 639


>gi|114769524|ref|ZP_01447150.1| threonyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114550441|gb|EAU53322.1| threonyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 649

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 153/452 (33%), Gaps = 59/452 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A +  H+ + R      + + + G   W P G K    +   +R  Q
Sbjct: 234 KAHLTMLEE----AALRDHRKLGREMDLFHMQEEAPGQIFWHPNGWKIYTALQDYMRRMQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
           ++ G +E++ P +    LW  SG ++ Y + M  +    D A         P +      
Sbjct: 290 DKNGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F  + E  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIF-CSEEQIESETK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   ++  LG     ++    P     S E    A+        S        P  
Sbjct: 409 IYIDFLSNVYKDLGFNEFKVKFSDRPEKRSGSDEVWDKAEKA----LLSATRAAGIEPEL 464

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--- 292
           N                 A                             +G  +  GT   
Sbjct: 465 NIGEGAFYGPKLEFVLTDA-----------------------------IGRDWQCGTHQV 495

Query: 293 KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            + LP  + A++ G DG  H  V +    +G+      ++  SH GK   W   +AP ++
Sbjct: 496 DFVLPERLDASYIGKDGDKHRPVMLHRATLGSFERFIGILIESHAGKLPFW---LAPRQV 552

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + +I +      D   +  A L+  G     D   E+I  +     L   P+ + VG++
Sbjct: 553 VVASIVSD---ANDYVLEKVAALNTAGIRAEADIRNEKINYKVREHSLGKVPVILAVGAR 609

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            V +  V ++       E     ++I   S  
Sbjct: 610 EVEEDTVTVRRLGQKQTEVNQFNDIIAILSSE 641


>gi|126740677|ref|ZP_01756363.1| threonyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126718192|gb|EBA14908.1| threonyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 649

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 151/449 (33%), Gaps = 53/449 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G K    +   +R  Q
Sbjct: 234 KAHLHMLEE----AAKRDHRKLGREMNLYHMQEEAPGQVFWHPNGWKIYTTLQDYMRRMQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG +D Y + M  +    D A         P +      
Sbjct: 290 ERDGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEDHAREKAINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   D + F  + +  +    
Sbjct: 350 VFNQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIF-CSEDQIESETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K      +++  LG  +  ++  + P     S E   L +        +  +    +  E
Sbjct: 409 KFIAFLSKVYADLGFHNWTIKLSTRPEKRIGSDESWDLVEKALGDACKAAGYEYEVLEGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G         +
Sbjct: 469 GAFYGPKLEFTLTD---------------------------AIGRNWQCGT---LQVDPN 498

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + A F G DG  H    +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 499 LPERLEANFIGQDGNKHRPFMLHRACLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 555

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++   L   G     D   E+I  +     +   P+ + VG + V 
Sbjct: 556 SITSD---ADDYVNEVVETLRAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVE 612

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++       +   L+E +   +  
Sbjct: 613 ERTVSVRRLGEKQTKVEGLDETVAKLTQE 641


>gi|319892730|ref|YP_004149605.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162426|gb|ADV05969.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464237|gb|ADX76390.1| threonyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 645

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 171/435 (39%), Gaps = 35/435 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQLLEERKERDHRRIGKEMELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN-DKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P + + DL+  SG +D Y ++M      + D+AM+  P +      I+ +  
Sbjct: 288 LGYDHVYTPVMANVDLYKTSGHWDHYQEDMFPPMQLDADEAMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + DA+ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDAHIF-VRPDQIKEEFKRVVQMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++   G +    R                  D  + + +   D M     +   +  D
Sbjct: 407 LDVYEDFGFEDYKFRLSYR--------------DKADKEKYYDDDDMWNTAEAMLKEAVD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +N   E+     A      + ++  ++ + + +S   ++    F    K+      T
Sbjct: 453 --EMNLPYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPKKF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ + M    A +     G    W   +AP ++ +I +   + +
Sbjct: 503 YIGKDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPQQVEIIPVN--NDL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   +I+  L   G  V  DD  E++G +   A +   P Q++VG K + +++V ++ 
Sbjct: 558 HYDYARQIHDELKSQGVRVHIDDRNEKMGYKIREAQMKKIPYQLVVGDKELENNEVNVRQ 617

Query: 421 RLTGIREDMSLEEVI 435
             +  ++ +  +  I
Sbjct: 618 YGSKDQKTVEKDTFI 632


>gi|221311719|ref|ZP_03593566.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316045|ref|ZP_03597850.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320956|ref|ZP_03602250.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325241|ref|ZP_03606535.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767793|ref|NP_391636.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763338|sp|P18256|SYT2_BACSU RecName: Full=Threonyl-tRNA synthetase 2; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225185421|emb|CAB15783.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 638

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 157/441 (35%), Gaps = 42/441 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 235 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 DEVRTPFMMNQRLWEQSGHWDHYRDNMY-FSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F +  +  +    +       ++
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIF-VREDQIESEIKEAIRLIDEVY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P            ++    +V             +          
Sbjct: 411 RTFGFEY-SVELSTRPEDSLGDDSLWEASERALARVLEELGLSYEINEGDG--------- 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                      A      +  + D+L  + + +   ++    F    K+      T+   
Sbjct: 461 -----------AFYGPKIDFHIKDALKRSHQCATIQLD----FQMPEKF----DLTYINE 501

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K   V +     G++     ++   + G   +W   +AP ++ +I +     V  D 
Sbjct: 502 LNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVW---LAPIQVQIIPV---SHVHLDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++     
Sbjct: 556 CRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGHQ 615

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E +  +   +    +  N 
Sbjct: 616 QNEHVPFQTFKDKLVKQVENR 636


>gi|78357249|ref|YP_388698.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|114152190|sp|Q30Z93|SYP_DESDG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78219654|gb|ABB39003.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 574

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 123/271 (45%), Positives = 171/271 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +++P L+E P DAE+ SHKL++R GMI + + GIY +LPLG ++++   +I+R+E
Sbjct: 1   MRWSNFYIPTLKEAPADAEVVSHKLLIRAGMIRKLTSGIYIYLPLGLRSIEKAASIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q ADLW ESGR+D YGKE+LR++DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNSAGAQELLMPMVQPADLWQESGRWDFYGKELLRISDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   +G   SY  M+ +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFMMKDAYSFDRDAQGLDLSYRAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GLK   + A+SG IGG  SHEF+VLA+TGE  +    D              
Sbjct: 181 YMKIFSRMGLKFRAVEADSGSIGGSFSHEFMVLAETGEDTIAFCHDCDYSANVERAEVVC 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +   ++ V      +        E      
Sbjct: 241 TLDECDAPVAGVEEVHTPDRHTVEEVCEFMN 271



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 2/168 (1%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         RGIEVGH+F  GTKYS  M   F   +GK+  + MG YGIG  RVVA
Sbjct: 390 DPCPRCSGTLELTRGIEVGHVFKLGTKYSEAMGCKFLDENGKEQVMLMGCYGIGVSRVVA 449

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE + D  GI++P  +APF++ L+N+   +       +++Y  +   GCDV  DD  E
Sbjct: 450 ACIEQNSDENGIVFPPPIAPFEVLLLNLDGKNDDVNARVDELYGAVQAAGCDVLMDDRNE 509

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +F  ADL+G P+Q++VG K ++   VE K R TG + ++ ++  
Sbjct: 510 RPGVKFKDADLIGVPMQLVVGGKGLARGIVEAKDRRTGEKTELPVDGF 557


>gi|222151594|ref|YP_002560750.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|222120719|dbj|BAH18054.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 642

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 177/448 (39%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L IL+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KALKEHLKILEERKERDHRKIGKELELFT-TSQLVGAGLPLWLPNGATIRRELERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           +   G   +  P + S DL+  SG +D Y ++M    +  ++A++  P +      ++++
Sbjct: 285 EVALGYDHVYTPIMGSVDLYKTSGHWDHYQEDMFPPMEMENEALVLRPMNCPHHMMVYKN 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR LP    ++ +  R E      G+ R R   + DA+ F + P+  K  + ++  
Sbjct: 345 KPHSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDAHIF-VRPDQIKEEFIRVVQ 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + ++     K    R                  D+ +T+ +   D M         + 
Sbjct: 404 LVIDVYKDFKFKEYKFRLSYR--------------DSEDTEKYFQDDEMWERAQLMLKEA 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + L+   E+     A      + ++  +L + + +S   ++    F    ++     
Sbjct: 450 VDEMGLD--YEEAPGEAAFYGPKLDVQVKTALGKEETLSTVQLD----FLLPERF----D 499

Query: 300 ATFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G+DG+ H   +   G+ + M    A +   + G   +W   +AP ++ +I +   +
Sbjct: 500 LEYIGSDGEKHRPVVIHRGVISTMERFVAFLTEEYKGAYPLW---LAPNQLEIIPVS--N 554

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +V  D   K+Y  L   G     DD  E++G +   A +   P QV+VG K + +++V +
Sbjct: 555 EVHYDYARKLYDELKSQGVRCHIDDREEKMGYKIREAQMHKVPYQVVVGDKEIENNEVNV 614

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           +       + +  ++ I          +
Sbjct: 615 RQYGKKESKTIDRDDFIWSIVDEIRLKK 642


>gi|143764|gb|AAA22863.1| threonyl-tRNA synthetase (thrS2) (EC 6.1.1.3) [Bacillus subtilis]
          Length = 638

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 157/441 (35%), Gaps = 42/441 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 235 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 DEVRTPFMMNQRLWEQSGHWDHYRDNMY-FSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F +  +  +    +       ++
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIF-VREDQIESEIKEAIRLIDEVY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P            ++    +V             +          
Sbjct: 411 RTFGFEY-SVELSTRPEDSLGDDSLWEASERALARVLEELGLSYEINEGDG--------- 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                      A      +  + D+L  + + +   ++    F    K+      T+   
Sbjct: 461 -----------AFYGPKIDFHIKDALKRSHQCATIQLD----FQMPEKF----DLTYINE 501

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K   V +     G++     ++   + G   +W   +AP ++ +I +     V  D 
Sbjct: 502 LNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVW---LAPIQVQIIPV---SHVHLDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++     
Sbjct: 556 CRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGHQ 615

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E +  +   +    +  N 
Sbjct: 616 QNEHVPFQTFKDKLVKQVENR 636


>gi|240138908|ref|YP_002963383.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
 gi|240008880|gb|ACS40106.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
          Length = 675

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 145/447 (32%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +        +   G+  W   G      + A +R     
Sbjct: 232 YLHRLEE----AERRDHRRLGKEMDLFHFQEEGPGVVFWHAKGWTIFQELIAYMRRRLKG 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M           + +     P +      IF
Sbjct: 288 -DYAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +       K+
Sbjct: 347 KHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEDQLAAECLKI 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     S      A+   TQV                
Sbjct: 406 NDLILSTYADFGFDQILVKLSTRPEKRVGSDALWDHAEAVMTQVL--------------- 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E +       +    R  + G        ++LP
Sbjct: 451 AQIEEQSGGRIKTAVNPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLP 501

Query: 298 --MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A++  AD +     M      G+M     ++     G   +W   +AP ++ +  I
Sbjct: 502 ERFDASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLW---LAPVQVVVATI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++   L + G  V  D   E+I  +     L   P+ + +G +   + 
Sbjct: 559 TSD---ADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEER 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++   +     M+L+  +      
Sbjct: 616 TVSVRRMGSQKTTTMTLDAALAAFIEE 642


>gi|260424668|ref|ZP_05732876.2| threonine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402758|gb|EEW96305.1| threonine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 647

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 149/445 (33%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++     +   RD      +L L +   H+   G   + P G    + + A  RE   
Sbjct: 240 LDRFLFVRAEAEKRDHRKLGKQLNLFS--FHEEGPGFPFFHPKGMVIRNELIAYERELFR 297

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + S  LW++SG +D Y + M      +++     P +       ++++ 
Sbjct: 298 EFGYEEIMTPIILSKKLWLQSGHWDHYKENMY-FTQIDEEDYAVKPMNCPGGILYYKTNQ 356

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +  +  R EL     G+ R R F   DA+ F +T +  K    K    Y
Sbjct: 357 HSYRELPKRVGEFGIVHRHELHGALHGLFRVRVFTQDDAHIF-MTQDQMKDEVIKTMEMY 415

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++   GL+   +   + P     S E   ++         +          +   +  
Sbjct: 416 RKLYSVFGLEY-HVELSTRPENSMGSEELWEISTNALRDAVEAAGVPYVINEGDGAFYGP 474

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +                               K    R  + G I     +        
Sbjct: 475 KLDF---------------------------HIKDCLGRTWQCGTI-QMDMQLPERFDVN 506

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   M    G G++     ++     G    W   +AP ++ ++ +    + 
Sbjct: 507 YVGEDGEKHRAVMLHRAGYGSLERFIGILIEHFAGAFPSW---IAPVQVKVVPVT---EK 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +   LS     V  ++  + +G +   A +   P  ++VG K ++   V ++ 
Sbjct: 561 HMNYARSVADALSASNVRVEIEEGNDTLGYKIRKAQMEKVPYTLVVGDKEMNGHTVSVRS 620

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    + +   ++       + 
Sbjct: 621 RKNGDEGSLPVAVFVSNLIREIRDR 645


>gi|238650420|ref|YP_002916272.1| threonyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|259516667|sp|C4K0X3|SYT_RICPU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238624518|gb|ACR47224.1| threonyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 635

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 157/440 (35%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-AEQITDETVSFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E    A+    +      F     P E   +   + 
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNEVWDKAENALKEAVEQAGFTYTLNPGEGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G    ++   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQKNKQVAIRRL 610

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I      
Sbjct: 611 GTTDQEVLSVEQLIAVVKEE 630


>gi|294677983|ref|YP_003578598.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476803|gb|ADE86191.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 648

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 152/447 (34%), Gaps = 49/447 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  + +L+E    A    H+ + R      + + + G   W P G      +   +R  Q
Sbjct: 234 KAHMTMLEE----AAKRDHRKLGREMDLFHMQEEAPGQVFWHPNGWTIYTTLQDYMRRRQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G +E++ P + +  LW  SG +++Y + M  +    + A         P +      
Sbjct: 290 RADGYVEVNTPQVVNRKLWEASGHWENYRENMFIVEVDEEGAREKVINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F +  +  +    
Sbjct: 350 IFNVGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDAHIFCM-EDQIEAETK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       ++  LG     ++  + P     + E    A+        +          E
Sbjct: 409 KFIEFLSAVYADLGFDKWRIKLSTRPEKRIGTEESWDHAEAALANAVTAAGHEYEIFEGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++  + +     ++            
Sbjct: 469 GAFYGPKLEFVLT--------------------DAIGRDWQCGTLQVDPNLPERL----- 503

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A + G DG K   V +    +G+      ++  SH GK  +W   +AP ++ + +I
Sbjct: 504 ---DANYIGPDGAKHRPVMLHRACLGSFERFIGILIESHAGKLPLW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D  E++ A L   G     D   E+I  +     L   P    +G+K V   
Sbjct: 558 TS---EADDYVEEVAATLIAAGIRAECDTRNEKINYKVREHSLGKVPYIFAIGAKEVETR 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++       E ++L+ ++      
Sbjct: 615 TVSVRRLGDTRTETVALDAIVAALKAE 641


>gi|254561516|ref|YP_003068611.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
 gi|254268794|emb|CAX24755.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
          Length = 675

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 145/447 (32%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +        +   G+  W   G      + A +R     
Sbjct: 232 YLHRLEE----AERRDHRRLGKEMDLFHFQEEGPGVVFWHAKGWTIFQELIAYMRRRLKG 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M           + +     P +      IF
Sbjct: 288 -DYAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +       K+
Sbjct: 347 KHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEDQLAAECLKI 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     S      A+   TQV                
Sbjct: 406 NDLILSTYADFGFDQILVKLSTRPEKRVGSDALWDHAEAVMTQVL--------------- 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E +       +    R  + G        ++LP
Sbjct: 451 AQIEEQSGGRIKTAVNPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLP 501

Query: 298 --MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A++  AD +     M      G+M     ++     G   +W   +AP ++ +  I
Sbjct: 502 ERFDASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLW---LAPVQVVVATI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++   L + G  V  D   E+I  +     L   P+ + +G +   + 
Sbjct: 559 TSD---ADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEER 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++   +     M+L+  +      
Sbjct: 616 TVSVRRMGSQKTTTMALDAALAAFIEE 642


>gi|197119263|ref|YP_002139690.1| prolyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|226701292|sp|B5EIT9|SYP_GEOBB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|197088623|gb|ACH39894.1| prolyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 573

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V AI+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWEFYGKELLRFNDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EVRSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +          
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGSYSHEFMVLADSGEDAIVSCSACEYAA 231



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 107/185 (57%), Gaps = 3/185 (1%)

Query: 263 HNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            N  + D+ P     K    RGIEVGH+F  GTKYS  + ATF  ADGK+  + MG YGI
Sbjct: 385 RNVVIGDACPRCDSGKLEIWRGIEVGHVFKLGTKYSKALKATFLDADGKEQIIFMGCYGI 444

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R VAA IE +HD  GII+P  +APF+  + ++ A +   + A E IY  L + G +V
Sbjct: 445 GVGRTVAACIEQNHDENGIIFPIPIAPFQCIISSLSAKEDEVKAASESIYQELLEAGIEV 504

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+G PL+++VG+K +++ KVE+K R +G  E + + E I    
Sbjct: 505 LLDDRDERPGFKFKDADLIGIPLRIVVGAKALAEGKVELKERRSGEVEVLPIAEAIAKVK 564

Query: 440 HRFSN 444
                
Sbjct: 565 AAVKE 569


>gi|294140027|ref|YP_003556005.1| prolyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293326496|dbj|BAJ01227.1| prolyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 569

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GM+ +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVVSHQLMLRAGMVRRNASGLYSWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGAVEILMPMVQPADLWIETGRWEKFGPELLRFQDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y+ MF +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQESMDVTYDAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL   P+ A++G IGG +SHEF VLAD+GE  +  S
Sbjct: 181 YNNIFERMGLSFRPVLADTGSIGGSMSHEFHVLADSGEDLIAYS 224



 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 3/204 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
            D      I  +   P A  +D+ N    +  P  K   A  RGIEVGHIF  GT YS  
Sbjct: 364 QDNKHYFGINWERDLPQAEAADLRNIIEGEPSPCGKGTIALLRGIEVGHIFQLGTNYSES 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M A     +GK   + MG YG+G  R+VAA IE +HD +GIIWP ++APF + ++ +  H
Sbjct: 424 MHANVLDQNGKSKTLLMGCYGVGVSRIVAAAIEQNHDDRGIIWPKAIAPFTVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  EK+Y  L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   
Sbjct: 484 KSHRVKDIAEKLYQDLNDAGIEVLFDDRKERPGVMFADMELVGLPHVVVIGDRNIDNGVF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
           E K+R TG ++++  ++++++   
Sbjct: 544 EYKNRRTGEKQEIPFDQLLDFLKS 567


>gi|153808043|ref|ZP_01960711.1| hypothetical protein BACCAC_02329 [Bacteroides caccae ATCC 43185]
 gi|149129652|gb|EDM20866.1| hypothetical protein BACCAC_02329 [Bacteroides caccae ATCC 43185]
          Length = 646

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 163/463 (35%), Gaps = 67/463 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQ-HSKGIYSWLPLGQKALDNVNAII 57
           +    +L +L+E    A+   H+ + +     M  +   KG+  WLP G      +   +
Sbjct: 226 KMLDEYLALLEE----AKKRDHRKIGKEMQLFMFSETVGKGLPMWLPKGTALRLRLQDFL 281

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMT 115
           R  Q R    E+  P + +  L+V SG Y  YGK+  +        +     P +     
Sbjct: 282 RRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHC 341

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +I+++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  +
Sbjct: 342 EIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEF 400

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDF 227
            ++      +F  +  ++   +            IG D + E        E  +  + + 
Sbjct: 401 LRVMDIISIVFRSMNFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACEE 454

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P                                 E    +    K        +G  
Sbjct: 455 KGLPAK------------------------------IEYGEAAFYGPKLDFMVKDAIGRR 484

Query: 288 FYFGT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +  GT    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W 
Sbjct: 485 WQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW- 543

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             + P ++ ++ I    +   D  E++   L         DD  E+IG +    ++   P
Sbjct: 544 --LTPEQVVILPI---SEKFNDYAEQVKMYLKTHEIRAIVDDRNEKIGRKIRDNEMKRIP 598

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +IVG K   + +V ++ +  G +  M  EE     +    N
Sbjct: 599 YMLIVGEKEAENGEVSVRRQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|51597293|ref|YP_071484.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|186896398|ref|YP_001873510.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|81825738|sp|Q667L4|SYP_YERPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701360|sp|B2JZ09|SYP_YERPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51590575|emb|CAH22216.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|186699424|gb|ACC90053.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 572

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDELRPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDELRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLALPLVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E++ +   +  
Sbjct: 546 YKNRRVGEKQMIKTSEIVEFLLSQIK 571


>gi|37524693|ref|NP_928037.1| prolyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|81834075|sp|Q7N8M7|SYP_PHOLL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|36784118|emb|CAE12987.1| prolyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 572

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 132/338 (39%), Positives = 186/338 (55%), Gaps = 31/338 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGIRVLKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNTGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T    + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHATQTSLQETYDNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    + A++G IGG  SHEF VLA +GE  +  S +              
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLAASGEDDIVFSTESNYAANIELAEAVA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                                        ++P              I     +++LP+  
Sbjct: 241 PAHDR------------------------AVPTEDMHLVDTPNAKTIAELVEQFNLPIEK 276

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           T          + + +    + +++A ++   H+   I
Sbjct: 277 TV-------KTLMVHAAEGTSHKLIALLVRGDHELNEI 307



 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 118/205 (57%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           +      I  +   P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 NDKHYFGINWERDLPVPEVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG +  V MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGHNQIVTMGCYGIGVTRIVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  V++G + + + +VE
Sbjct: 486 SYRVKEVAEKLYADLRASGIDVIFDDRKERPGVMFADMELIGVPHTVVIGDRNLDNGEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            KHR    ++ + L+ V++Y   + 
Sbjct: 546 YKHRRNDEKQMLKLDNVVDYLKQQL 570


>gi|290473678|ref|YP_003466550.1| proline tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289172983|emb|CBJ79754.1| proline tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 573

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 123/265 (46%), Positives = 164/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GM  + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMTRKLASGLYNWMPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFEDRGARPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 EVTSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    + A++G IGG  SHEF VLAD+GE  +  S +              
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLADSGEDDIAFSTESNYAANIELAEAVM 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    E         +    E
Sbjct: 241 PSHERAVPSEDMHLVETPNAKTIAE 265



 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 118/208 (56%), Gaps = 3/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 366 DDKHYFGINWERDLPLPEIADIRNVLEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +  DG +  V MG YGIG  R+VAA IE +HD +GIIWPD++APF+++L+ +  H 
Sbjct: 426 KATVQNEDGHNQVVSMGCYGIGVTRIVAAAIEQNHDDRGIIWPDAIAPFQVALLPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + + + +VE
Sbjct: 486 SYRVKEVAEKLYADLRANGIDVIFDDRKERPGVMFADMELIGVPHTLVIGDRNLDNGEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            K+R  G ++ + LE +I Y   +   +
Sbjct: 546 YKYRRNGDKQMLKLEGIIEYLKEQIKQH 573


>gi|258516344|ref|YP_003192566.1| prolyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780049|gb|ACV63943.1| prolyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 572

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 111/232 (47%), Positives = 157/232 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SHKL+LR G I + + G+Y++LPL Q+ L  +  I+REE
Sbjct: 1   MRASQLLIPTLRETPAEAEVISHKLLLRAGYIRRSAAGVYTYLPLAQRVLSKIKRIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR+D YG E+ RL DR+ +    GPTHEE++T + +S
Sbjct: 61  MDRQGGQEILMPIMQPAELWQESGRWDVYGPELFRLKDRHGRDFALGPTHEEIITALVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G   +Y KM+ +
Sbjct: 121 ELSSYKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDADEAGLDITYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           Y+RIF R GL+  P+ A+SG IGG  +HEF+VLA++GE  V   ++      
Sbjct: 181 YVRIFQRCGLRFRPVEADSGAIGGSDTHEFMVLAESGEALVVFCQNENCSYA 232



 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 2/215 (0%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFY 289
           + +            ++           +D+   K  +  P    V A  +GIEVG +F 
Sbjct: 354 VNAVTGANKADYHYKNVCPGRDFKAGKIADIRFVKAGEPCPVCGGVLAEAKGIEVGQVFK 413

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G KYS  + ATF+  +GK  +  MG YGIG  R +AA IE  +D  GI WP ++APF +
Sbjct: 414 LGDKYSKSLEATFQDENGKTRHYVMGCYGIGVSRTMAAAIEQHNDLNGITWPAAIAPFHL 473

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ +   DQ   D  E +Y    + G +V  DD  E+ G +F  ADL+G+PL++ VG K
Sbjct: 474 VIVPVNVKDQALMDISEVLYRSFLESGVEVVLDDRPERPGVKFKDADLVGYPLRLTVGKK 533

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F+ +  +E++ R +G    +  EE++++      +
Sbjct: 534 FLEEGLLELRERRSGKTHFLKEEEILSFIKDFIKS 568


>gi|238787209|ref|ZP_04631008.1| Prolyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238724471|gb|EEQ16112.1| Prolyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 572

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  G+KYS  M
Sbjct: 366 DGKHYFGINWERDLPLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYATLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E+I +   +  
Sbjct: 546 YKNRRAGEKQMIKTNEIIEFLLSQIK 571


>gi|114152232|sp|Q3IGT7|SYP_PSEHT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 574

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 121/225 (53%), Positives = 154/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  AIEM +P +Q ADLW ESGR+D +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MNKANAIEMLMPVIQPADLWEESGRWDEFGPELMRFTDRHNRTFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K RDE RPRFGVMR+REF MKDAYSF L+ E    +Y  M  +
Sbjct: 121 EISSYKQLPISLYQIQTKVRDERRPRFGVMRAREFTMKDAYSFHLSDECLDATYQVMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RL L   P+ A++G IGG +SHEF VLA++GE  +  S 
Sbjct: 181 YCNIFERLNLDYRPVIADTGSIGGSVSHEFHVLAESGEDAIAFSD 225



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I           +D+ N    D+ P  +      RGIEVGHIF  GTKYS  M
Sbjct: 368 DDEHYSGINWDRDVTDYEVADIRNIVEGDASPCGQGTLQIKRGIEVGHIFQLGTKYSQAM 427

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            A      GK+  + MG YGIG  R+VAA IE ++D  GIIWP  +APF ++++ +  H 
Sbjct: 428 KAGVLNESGKNQIMTMGCYGIGVSRIVAAAIEQNNDQYGIIWPQPIAPFDLAIVPMNMHK 487

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    +Y  L   G DV +DD  E+ G  F   +L+G P  +++G + + ++KVE
Sbjct: 488 SHRIPDIATNLYQGLKDAGLDVLFDDRKERPGVMFNDMELIGVPFTLVIGERNLDENKVE 547

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +K+R TG +  + ++  I+       
Sbjct: 548 LKNRRTGEKLMIDIDTAIDAIKAAVK 573


>gi|163851744|ref|YP_001639787.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|163663349|gb|ABY30716.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 675

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 145/447 (32%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +        +   G+  W   G      + A +R     
Sbjct: 232 YLHRLEE----AERRDHRRLGKEMDLFHFQEEGPGVVFWHAKGWTIFQELIAYMRRRLKG 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M           + +     P +      IF
Sbjct: 288 -DYAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +       K+
Sbjct: 347 KHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEDQLAAECLKI 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     S      A+   TQV                
Sbjct: 406 NDLILSTYADFGFDQILVKLSTRPEKRVGSDALWDHAEAVMTQVL--------------- 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E +       +    R  + G        ++LP
Sbjct: 451 AQIEEQSGGRIKTAVNPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLP 501

Query: 298 --MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A++  AD +     M      G+M     ++     G   +W   +AP ++ +  I
Sbjct: 502 ERFDASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLW---LAPVQVVVATI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++   L + G  V  D   E+I  +     L   P+ + +G +   + 
Sbjct: 559 TSD---ADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEER 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++   +     M+L+  +      
Sbjct: 616 TVSVRRMGSQKTTTMALDAALAAFIEE 642


>gi|30690426|ref|NP_198035.2| threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)
           [Arabidopsis thaliana]
 gi|27735258|sp|O04630|SYTM_ARATH RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; Flags:
           Precursor
 gi|332006227|gb|AED93610.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 709

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 162/447 (36%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+         HQ S G Y +LPLG +  + +   I+
Sbjct: 300 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 355

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +    G  E+  P + + +LW  SG  D+Y   M    +   +     P +      IF
Sbjct: 356 NQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIF 414

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  ++SYR LP       +  R+E      G+ R R F   DA+ F  T E  K     +
Sbjct: 415 QHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTT-EQVKGEVQGV 473

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     ++  + P       E    A+    +   +          +  
Sbjct: 474 LEFIDYVYKVFGFTY-ELKLSTRPEKYLGDLETWDKAEADLKEAIEAFGKPLVLNEGDG- 531

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D++    + +   ++    F    +++L 
Sbjct: 532 -------------------AFYGPKIDITVSDAMNRKFQCATLQLD----FQLPIRFNLE 568

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A  +    K   V +    +G++  + A++   + GK   WP  ++P +  +  I   
Sbjct: 569 YAA--EDEAKKSRPVMIHRAVLGSVERMFAILLEHYKGK---WPFWISPRQAIVCPISEK 623

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      EK+  ++   G  V  D    +I  +   A L  +   ++VG    +  +V 
Sbjct: 624 SQ---QYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVS 680

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R        S+E+++     + + 
Sbjct: 681 VRVRDNAAHSVKSIEDLLEEFKAKTAE 707


>gi|325266259|ref|ZP_08132938.1| proline--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982221|gb|EGC17854.1| proline--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 569

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A + SHKLMLR G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALPSHKLMLRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVIQPADLWKESGRWDFYGDELLRITDRHDNEFCFSPTCEEMVTDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADFASLQETYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y R+F RLGL   P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCRVFGRLGLNFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSD 225



 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A     +D+ N    D  P
Sbjct: 336 LGPVGFKGRVYADFATEKGADWVIGANEDGFHYTGFNFGRDAAEPEFADIRNVVAGDPSP 395

Query: 273 ENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             K     ARGIEVGH+F    KYS  ++A+F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 CGKGSLQLARGIEVGHVFQLRDKYSAALNASFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +HD +GIIW D++APF   ++ +     +  R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNHDERGIIWTDTMAPFAAVIVPMNYKKSEAVREAADKIYADLLAAGVDVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              A ++LLG P ++++G + + +  VE   R     + + + ++  + + +  
Sbjct: 516 VLLADSELLGIPHRIVIGDRGLKEGNVEYARRTDSEAQSVPVGDIAAHVAAQLR 569


>gi|165932872|ref|YP_001649661.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|165907959|gb|ABY72255.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 644

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 157/440 (35%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 240 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 297

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 298 YTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 356

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 357 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-AEQITDETVSFCKLLTEV 415

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E    A+    +      F     P E   +   + 
Sbjct: 416 YKDFGFTDIKVKFSDRPEIRAGSNEVWDKAENALKEAVEQAGFTYTLNPGEGAFYGPKLE 475

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 476 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 505

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 506 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 559

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G    ++   ++I  +         P+  ++G +   + +V I+  
Sbjct: 560 NDYALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRL 619

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I      
Sbjct: 620 GTTDQEVLSVEQLIAVVKEE 639


>gi|325298803|ref|YP_004258720.1| threonyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318356|gb|ADY36247.1| threonyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 647

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 161/460 (35%), Gaps = 61/460 (13%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 227 KMLDEYLVMLEEAKKRDHRKIGKEMDLFM-FSDMVGKGLPMWLPKGTALRIRLQDFLRRI 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + +  L+V SG Y  YGK+  +        +     P +      I+
Sbjct: 286 QARYDYQEVMCPPIGNKLLYVTSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 345

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           R+  +SYR+LP    +     R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 346 RNSPRSYRDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRV 404

Query: 178 FVSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +F  +  ++   +            IG D + E        E  +  +      
Sbjct: 405 MDIISIVFKSMNFENFEAQISLRDKVNREKYIGSDENWE------KAEQAIVEACQEKGL 458

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                                             E    +    K        +G  +  
Sbjct: 459 KAK------------------------------VEYGEAAFYGPKLDFMVKDAIGRRWQL 488

Query: 291 GT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GT    Y+LP      + GAD + H  V +     G+M    AV+     GK  +W   +
Sbjct: 489 GTIQVDYNLPERFQLEYMGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---L 545

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P +++++ I    +   +  +++   L K       DD  E+IG +    ++   P  +
Sbjct: 546 TPDQVAVLPI---SEKFNEYADQVRLELKKYDIRALVDDRNEKIGRKIRDNEMKHIPYML 602

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IVG K  ++ +V ++ +  G +  + +EE     +    N
Sbjct: 603 IVGEKEAANGEVSVRKQGEGDKGTVKIEEFAKNIAEEVHN 642


>gi|253699963|ref|YP_003021152.1| prolyl-tRNA synthetase [Geobacter sp. M21]
 gi|259511598|sp|C6E496|SYP_GEOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|251774813|gb|ACT17394.1| prolyl-tRNA synthetase [Geobacter sp. M21]
          Length = 573

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V AI+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWEFYGKELLRFNDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EVRSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A++G IGG+ SHEF+VLAD+GE  +          
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGNYSHEFMVLADSGEDAIVSCSACEYAA 231



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 3/185 (1%)

Query: 263 HNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            N  + D+ P     K    RGIEVGH+F  GTKYS  + ATF  ADGK+  + MG YGI
Sbjct: 385 RNVVIGDACPRCDSGKLEIWRGIEVGHVFKLGTKYSKALKATFLDADGKEQTIFMGCYGI 444

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R VAA IE +HD  GII+P  +APF+  + ++   +   + A E IY  L + G +V
Sbjct: 445 GVGRTVAACIEQNHDENGIIFPIPIAPFQCIISSLSVKEDEVKAASESIYQELLEAGIEV 504

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+G PL+++VG+K +++ KVE+K R +G  E + + E I    
Sbjct: 505 LLDDRDERPGFKFKDADLIGIPLRIVVGAKALAEGKVELKERRSGEVEVLPIAEAIAKVK 564

Query: 440 HRFSN 444
                
Sbjct: 565 AAVKE 569


>gi|311694949|gb|ADP97822.1| prolyl-tRNA synthetase [marine bacterium HP15]
          Length = 577

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQLMLRAGMIRKLAAGLYTWLPMGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWEESGRWTQYGGELLRMKDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQ+Q KFRDE RPRFGVMR+REFLMKDAYSF L  E    +Y  M  +
Sbjct: 121 EISSYKELPANFYQVQTKFRDERRPRFGVMRAREFLMKDAYSFHLNAESLNETYELMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    ++A+SG IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCAIFDRFGLDYRAVQADSGAIGGSASHEFHVLASSGEDDIVFS 224



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 110/196 (56%), Gaps = 3/196 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  M+AT    
Sbjct: 375 VNWERDAALERVEDLRNVVEGDPSPDGKGTLEIRRGIEVGHIFKLGNKYSTAMNATVLDE 434

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           +GK   + MG YG+G  RVVAA IE +HD  GIIWPD++APF+++++ + AH      +A
Sbjct: 435 NGKTVIMDMGCYGLGVSRVVAAAIEQNHDENGIIWPDAIAPFQVAIVTLNAHKSPTVAEA 494

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+Y +L + G DV  DD  E+ G +FA  +L+G P + +V  + ++   +E K R   
Sbjct: 495 GEKLYEQLRQAGYDVLLDDRKERPGVKFADMELIGIPHRFVVSERGLAAGTLEYKGRKDA 554

Query: 425 IREDMSLEEVINYASH 440
            ++D+ + E + +  +
Sbjct: 555 EKQDVPVAEALPFLVN 570


>gi|224370824|ref|YP_002604988.1| threonyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|259516390|sp|C0QAP1|SYT_DESAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|223693541|gb|ACN16824.1| ThrS2 [Desulfobacterium autotrophicum HRM2]
          Length = 636

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 159/448 (35%), Gaps = 42/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +++E   RD      ++ L +   HQ + G+  +   G +  + + A  R+E
Sbjct: 222 KELKAYLHLIEEAKKRDHRKIGTRMGLFS--FHQEAAGMPFFHAKGMEMWNELLAYWRDE 279

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +E   P + S  LW +SG +++Y + M   +  + +     P +      ++++
Sbjct: 280 HRAAGYVETKTPVMMSRHLWEKSGHWENYRENMYT-SVVDGEEYAIKPMNCPGGMLLYKT 338

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP    +I L  R EL     G+ R R F   DA+ F +TPE  +     +  
Sbjct: 339 ESHSYRDLPLRAGEIGLVHRHELSGALSGLFRVRAFHQDDAHIF-MTPEQIESEILGVLE 397

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              RI+ R GL    +   + P     S E    A  G       K    + I   +  F
Sbjct: 398 LVERIYSRFGLGF-HLELSTRPKKSIGSDEQWAEATNGLKNAL-DKYGQPYAINEGDGAF 455

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I                          K    R  + G +            
Sbjct: 456 YGPKIDIHI--------------------------KDALGRTWQCGTV-QLDMALPERFD 488

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+KGAD + H  + +     G++     ++     GK  +W   +AP +  ++ I    
Sbjct: 489 LTYKGADNEKHRPIMIHRVIYGSIERFFGILVEHFAGKFPLW---LAPVQAVVLPINDD- 544

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + +   L   G     D   E +  +   A +   PL + +G K      + +
Sbjct: 545 --LADHAQTVKKELESNGIRCDVDLRTESLKKKIREAQVNYVPLIITIGEKEKESGTLSV 602

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           +     +R  +S+ + I          +
Sbjct: 603 RTLDGKVRMGLSMADFIPPVLAHIRARQ 630


>gi|157115843|ref|XP_001658309.1| threonyl-tRNA synthetase [Aedes aegypti]
 gi|108883479|gb|EAT47704.1| threonyl-tRNA synthetase [Aedes aegypti]
          Length = 716

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 158/438 (36%), Gaps = 43/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + +       H+ S G   + P G    + +   IR+E  + 
Sbjct: 303 LKEWEKIQEEAAKRDHRKLGKEQELFFFHELSPGSCFFQPKGAHIYNTLMNFIRDEYRKR 362

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW  SG +  Y + M        +     P +      +F    +S
Sbjct: 363 GFQEVITPNIYNAKLWQTSGHWQHYAENMFSFESEK-ETFALKPMNCPGHCLMFDHRNRS 421

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F + P+  K            
Sbjct: 422 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCM-PDQIKQEIIGCLDFLAH 480

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 481 VYGVFGFTFNLV-LSTRPEKYLGDIEVWNEAEKALAESLDKFGQPWKENPGDG------- 532

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L  N + +   ++    F    +++L     + 
Sbjct: 533 -------------AFYGPKIDITIMDALKRNHQCATIQLD----FQLPIRFNL----NYI 571

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K   V +    +G++  + A++  S+ GK   WP  ++P ++ ++ +        
Sbjct: 572 DDSGEKKRPVIIHRAVLGSVERMIAILTESYAGK---WPFWLSPRQVMVVPVGPQ---YD 625

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D  +K+  RL + G     D D G+ +  +   A L  F   ++VG K  S   V ++ R
Sbjct: 626 DYADKVRQRLHEAGFMAEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTR 685

Query: 422 LTGIREDMSLEEVINYAS 439
              +  ++S+++++    
Sbjct: 686 DNKVHGEVSVDDLVAKLR 703


>gi|222148633|ref|YP_002549590.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|254783504|sp|B9JWF4|SYT_AGRVS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221735619|gb|ACM36582.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 666

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 154/453 (33%), Gaps = 54/453 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L IL     +AE   H+ + R        +   G+  W   G K   ++ A +R     
Sbjct: 234 YLHIL----AEAEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWKMFQSLTAYMRRRLAN 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
           T   E++ P +    LW  SG +  Y + M  +            + + +     P +  
Sbjct: 290 T-YQEVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTNPNDPEADQRVFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F  T E   
Sbjct: 349 GHVQIFKHGLKSYRELPVRLAEFGLVHRYEASGALHGLMRVRGFTQDDAHVF-CTEEQMA 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               ++    L ++   G K + ++  + P     S E    A++  T+V  +       
Sbjct: 408 AECLRINDLILSVYEDFGFKEVVVKLSTRPEKRVGSDELWDRAESVMTEVLKA------- 460

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                    +  S   I         A      E         K    R  + G      
Sbjct: 461 --------IEEQSGGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---Q 503

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +      K   V +     G+M     ++  +  G   +W    AP +
Sbjct: 504 VDFNLPERFGAFYIDQHSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPLQ 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +      D    +  +L   G +V  D   E+I  +     +   P+ ++ G 
Sbjct: 561 VVVATITS---EADDYGRDVAEQLRDAGLEVETDFRNEKINYKVREHSVGKVPVIMVCGK 617

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +   +  V I+   +  +  M+L+E I      
Sbjct: 618 REAEERTVNIRRLGSQDQVSMTLDEAIASLVDE 650


>gi|85709956|ref|ZP_01041021.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85688666|gb|EAQ28670.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 671

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 147/462 (31%), Gaps = 58/462 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++    L  L+E    A    H+ + R      + + + G   W P G +    + A +R
Sbjct: 236 KQLNAHLHRLEE----AAKRDHRKLGREMDLFHLQEEAHGSVFWHPKGYRIWRELEAYMR 291

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------------------N 100
            + +  G  E+  P L     W +SG +  Y + M  + D                   +
Sbjct: 292 RKMDGGGYREIKTPQLMDVRQWTQSGHWGKYAENMFAVPDIVPDVDDSGEAEASPKVADD 351

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKD 159
              M   P +      +F+  I SYR+LP    ++    R+E      G+MR R+F   D
Sbjct: 352 ADWMAIKPMNCPAHVLVFKQGITSYRDLPIRLGEMGCCHRNEPHGALHGLMRVRQFTQDD 411

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A+ F  T +       K       ++   G     ++    P     S E    A+    
Sbjct: 412 AHIF-CTEDQVVEEVRKFCALADSVYRDFGFSY-HVKLALRPEKRFGSEEDWDKAEQELR 469

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    +     E    +       +    T                          
Sbjct: 470 DAVAEAGMDNEEYGWEELPGEGAFYAPKLEWHLTDA----------------------IG 507

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R  +VG I          + AT+ G DG+ H  V +     G+      ++     G   
Sbjct: 508 RTWQVGTI-QGDRVLPDRLDATYVGEDGEKHRPVMLHRAIFGSYERFIGILIEHFAG--- 563

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  +AP +  +  I +      D   +  A+L   G  V  D   E+I  +     L 
Sbjct: 564 RLPSWLAPVQAVVATIVSD---ADDYANEATAKLQAAGIRVESDLRNEKINYKVREHSLA 620

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             P  ++VG +   +  V ++      +  MSL+E I     
Sbjct: 621 KVPHLLVVGKREAEEGTVAVRTLGEKEQRVMSLDEAIAMLRD 662


>gi|330896119|gb|EGH28340.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 571

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + +  +Y+WLP G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASVLYTWLPRGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD 225



 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D +APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDILAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|83951679|ref|ZP_00960411.1| threonyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83836685|gb|EAP75982.1| threonyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 648

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 151/449 (33%), Gaps = 53/449 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G      +   +R  Q
Sbjct: 234 KAHLHMLEE----AAKRDHRKLGREMDLFHMQEEAPGQVFWHPNGWTIYTELQDYMRRAQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G +E++ P +    LW +SG ++ Y + M  +    + A         P +      
Sbjct: 290 RAGGYVEVNTPQVVDRKLWEKSGHWEKYQEHMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      GVMR R F   D + F    +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGVMRVRGFTQDDGHIF-CREDQIESETK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +      R++  LG ++  ++    P     S E    A+T       + +      P E
Sbjct: 409 RFIDFLSRVYRDLGFENFSVKFSDRPEKRSGSDEVWDKAETALKSATEAANCSFTLNPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G        + 
Sbjct: 469 GAFYGPKLEFVLTD---------------------------AIGRDWQCGT---LQVDFV 498

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + AT+ G DG K   V +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 499 LPERLDATYIGEDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 555

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++ A L   G     D   E+I  +     +   P+ +  G + V 
Sbjct: 556 SIVS---EADDYVHEVVAGLRAQGVRAEADIRNEKINYKVREHSVGKVPVILACGLREVE 612

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++          +L +V    +  
Sbjct: 613 EKTVSVRRLGEKQTSVQALADVTKALATE 641


>gi|301779664|ref|XP_002925249.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Ailuropoda melanoleuca]
          Length = 890

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 159/442 (35%), Gaps = 44/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + +       H  S G   +LP G    + +   IREE +R
Sbjct: 474 MMKTWEKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHR 533

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + ++ LW  SG +  Y + M    D         P +      IF    +
Sbjct: 534 RNFTEVLSPNMYNSRLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLIFAHRPR 592

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R +P  F    +  R+EL     G+ R R F   DA+ F  T E  +   N       
Sbjct: 593 SWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEINGCLQFLQ 651

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 652 SVYSTFGFSF-QLNLSTRPENFLGEVELWDEAEKQLQNSLVEFGKPWKMNPGDG------ 704

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L    T+
Sbjct: 705 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TY 742

Query: 303 KGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG  K + V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      
Sbjct: 743 VSKDGDDKRNPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---T 796

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V ++
Sbjct: 797 CEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNVR 856

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R   I  ++S+   I+   + 
Sbjct: 857 TRDNKIHGEISVTSAIDKLKNL 878


>gi|50122450|ref|YP_051617.1| prolyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|81827028|sp|Q6D1B9|SYP_ERWCT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49612976|emb|CAG76427.1| prolyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 572

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYDTMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLASSGEDDIVFS 224



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ K      RGIEVGHIF  G+KYS  +
Sbjct: 366 DGKHYFGINWVRDVALPQVADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE ++D +GIIWPD++APF ++++ +  H 
Sbjct: 426 KATVQGEDGRNQTLTMGCYGIGVTRVVAAAIEQNNDERGIIWPDAIAPFHVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SFRVKEVAEDIYQQLRAKGIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R  G ++ +   E+I++     
Sbjct: 546 YKNRRVGEKQMIKTSEIIDFLLANI 570


>gi|15081626|gb|AAK82468.1| AT5g26830/F2P16_90 [Arabidopsis thaliana]
 gi|29028762|gb|AAO64760.1| At5g26830/F2P16_90 [Arabidopsis thaliana]
          Length = 676

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 162/447 (36%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+         HQ S G Y +LPLG +  + +   I+
Sbjct: 267 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 322

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +    G  E+  P + + +LW  SG  D+Y   M    +   +     P +      IF
Sbjct: 323 NQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIF 381

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  ++SYR LP       +  R+E      G+ R R F   DA+ F  T E  K     +
Sbjct: 382 QHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTT-EQVKGEVQGV 440

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     ++  + P       E    A+    +   +          +  
Sbjct: 441 LEFIDYVYKVFGFTY-ELKLSTRPEKYLGDLETWDKAEADLKEAIEAFGKPLVLNEGDG- 498

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D++    + +   ++    F    +++L 
Sbjct: 499 -------------------AFYGPKIDITVSDAMNRKFQCATLQLD----FQLPIRFNLE 535

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A  +    K   V +    +G++  + A++   + GK   WP  ++P +  +  I   
Sbjct: 536 YAA--EDEAKKSRPVMIHRAVLGSVERMFAILLEHYKGK---WPFWISPRQAIVCPISEK 590

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      EK+  ++   G  V  D    +I  +   A L  +   ++VG    +  +V 
Sbjct: 591 SQ---QYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVS 647

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R        S+E+++     + + 
Sbjct: 648 VRVRDNAAHSVKSIEDLLEEFKAKTAE 674


>gi|260062396|ref|YP_003195476.1| threonyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88783959|gb|EAR15130.1| threonyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 646

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 167/445 (37%), Gaps = 41/445 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T   H+  +G+  WLP G    + +   +++ Q + G
Sbjct: 231 YLHMLEEAKKRDHRKLGKELELFT-FSHKVGQGLPLWLPKGAALRERLEQFLKKAQKKAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG++  +     R D+  +  P +     +IF +   
Sbjct: 290 YEMVVTPHIGQKELYVTSGHYAKYGEDSFQPIHTPREDEEFLLKPMNCPHHCEIFNATPV 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E      G+ R R F   DA+ F  T +     +  +    L
Sbjct: 350 SYRDLPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTHDQLDEEFKNVIDLSL 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG ++   +                  D  + + +  +        +        
Sbjct: 409 YVLGSLGFENFTAQVSIR--------------DPEKPEKYIGEVENWEKAEAAIIHAATE 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
             L+ ++E   A +                  K    R  ++G I      Y+LP     
Sbjct: 455 KGLDFVIEPGEAAFYGPKLDF---------MVKDALGRQWQLGTI---QVDYTLPERFDL 502

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+KG+D + H  V +     G+M    A++     G   +W   + P +  ++ +    +
Sbjct: 503 TYKGSDNELHRPVMIHRAPFGSMERFVALLLEHTGGNFPLW---LTPQQAIVLPV---SE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +K+   L         D   E +G +   A++  +P  +IVG + ++D  + ++
Sbjct: 557 KHENYAQKVLNSLENHEIRALLDARSETVGKKIREAEMGKYPFMIIVGDQEMTDGTISVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
                    +++E +        ++
Sbjct: 617 RHGGEDLGSITVEALSGLVKEEINS 641


>gi|229916382|ref|YP_002885028.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|259516484|sp|C4L461|SYT_EXISA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229467811|gb|ACQ69583.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 647

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 90/441 (20%), Positives = 173/441 (39%), Gaps = 35/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   +  +  +G+  WLP G      V   I +++   G 
Sbjct: 237 LRLLEEAKERDHRKLGKELDLF-FVSQEVGQGLPMWLPKGASIRRTVERYIVDKELELGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S DL+  SG +D Y  +M    + +++ ++  P +      I++   +SYR
Sbjct: 296 QHVYTPVLGSVDLYKTSGHWDHYQDDMFPKMEMDNEELVLRPMNCPHHMTIYKHEPRSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R  ++ D ++F +TPE  K  +  +      ++
Sbjct: 356 ELPLRIAELGGMHRYEMSGALTGLQRVRYMVLNDGHTF-VTPEQMKQEFKDIVHLIQEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+K    R                  D  + + +   D +     S+  +  D   L
Sbjct: 415 ADFGIKDYRFRLSYR--------------DPADKEKYFDNDAIWEMAQSQLKETMD--EL 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 459 ELPYFEAEGEAAFYGPKLDVQVRTALGKEETLSTVQLD----FLLPERF----DLTYTGP 510

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGKDH  + +    +  M    A +   + G    W   +AP ++ LI +     V  + 
Sbjct: 511 DGKDHRPIVLHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQVKLIPV---SHVHDEY 564

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++ A L K G  V  D   E++G +   A +   P+ +++G K   +  V I+     
Sbjct: 565 VAEVKAELVKRGVRVETDLRDEKLGYKIREAQMKKIPMTLVLGDKERDERAVNIRRYGQQ 624

Query: 425 IREDMSLEEVINYASHRFSNN 445
            +   SL+E I   +   +N 
Sbjct: 625 EQVSASLDEFIASLTDEIANR 645


>gi|160872889|ref|ZP_02063021.1| prolyl-tRNA synthetase [Rickettsiella grylli]
 gi|159121688|gb|EDP47026.1| prolyl-tRNA synthetase [Rickettsiella grylli]
          Length = 572

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S ++LP L+E P DAEI SH+LMLR GMI + + GIYSWLPLG + L  V  I+REE
Sbjct: 1   MRSSHFYLPTLKEAPADAEIKSHQLMLRAGMIRKVASGIYSWLPLGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  A E+ +P LQ A+LW ES R+++YG E+LRL DR+ +A   GPTHEE++T + R 
Sbjct: 61  MNRIHAQEVLLPILQPAELWQESERWEAYGPELLRLTDRHQRAFCLGPTHEEIITALVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF         +Y  M  S
Sbjct: 121 EVRSYKQLPLIFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHPDKTSLSETYQMMHAS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGLK   + A++G IGG  SHEF VLA TGE  +F S       
Sbjct: 181 YCRIFTRLGLKFRVVLADTGNIGGSQSHEFQVLAQTGEDHIFYSDRSDYAA 231



 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 3/204 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
               ++      P    +D+   ++ D  P+ K      RGIEVGHIF  G KY+  M+A
Sbjct: 365 FHYINVNWGRDCPLPPIADLRKVRVGDPSPDGKGRLKMERGIEVGHIFQLGNKYACAMNA 424

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
               +  ++  ++MG YGIG  RVV   IE  HD +GIIWP ++APF++ +I I  H ++
Sbjct: 425 RITTSHAREIPMEMGCYGIGISRVVGGAIEQCHDDQGIIWPSAMAPFQVVIIPIAYHRNR 484

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++A + +Y +L +   DV  DD  E+ G  FA  DL+G P ++++  K + +  V  K
Sbjct: 485 SVKEAADTLYQQLQQARIDVLLDDRKERPGKLFADNDLIGIPHRLVINEKMILEKTVAYK 544

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R+      ++LE ++N+   + +
Sbjct: 545 ARIEKHEHPVNLENILNFLHQKIN 568


>gi|322831614|ref|YP_004211641.1| prolyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321166815|gb|ADW72514.1| prolyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 572

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 122/225 (54%), Positives = 161/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF+R+GL    + A++G IGG  SHEF VLA +GE  V  S 
Sbjct: 181 YSQIFNRMGLDFRAVLADTGSIGGSASHEFQVLAQSGEDDVVFSD 225



 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 117/205 (57%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I     A     +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWDRDAALPEVADIRNVVAGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 NATVQGEDGRNQLMTMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +DA E +Y  L   G DV  DD  E+ G  FA  +L+G P QV++G + +   ++E
Sbjct: 486 SFRVKDAAEALYKELRSHGIDVILDDRKERPGVMFADMELIGVPHQVVIGDRNLDAEELE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R TG ++ +   +++ Y   + 
Sbjct: 546 YKNRRTGEKQMIKQSDIVEYLLSQI 570


>gi|153947724|ref|YP_001400022.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|170023340|ref|YP_001719845.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|166980172|sp|A7FFJ4|SYP_YERP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701362|sp|B1JQI5|SYP_YERPY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152959219|gb|ABS46680.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|169749874|gb|ACA67392.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
          Length = 572

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLALPLVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E++ +   +  
Sbjct: 546 YKNRRVGEKQMIKTSEIVEFLLSQIK 571


>gi|126695961|ref|YP_001090847.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166225476|sp|A3PBX1|SYT_PROM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126543004|gb|ABO17246.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 638

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 161/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  ++E    AE   H+ + +      I + S G+  W P G      +   IR
Sbjct: 226 KELKDYLTRIEE----AEKRDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E   +   +E+  P      LW +SG ++ +  +M   A  N +     P +      +F
Sbjct: 282 EILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTASEN-RTYAIKPMNCPCHIQVF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +  
Sbjct: 341 NQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIF-CTEEQIQEEVSTF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   I ++  + P     S +    ++   T+   +K+      P E  
Sbjct: 400 IDLVFEVYKTFGFDEIIIKLSTRPEKRVGSEDIWDKSEEALTKALDNKNLKWELQPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            K   +R  + G I      +S+P
Sbjct: 460 FYGPKIEFSL---------------------------KDCLSRVWQCGTI---QVDFSMP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   D  K + V +    +G+      ++   ++ K  IW   +AP++I L++I
Sbjct: 490 IRLDATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIW---LAPYQIILLSI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +    + C K    ++  G     D   E+IG +   A L   PL  ++G K     
Sbjct: 547 TDRN---IEKCLKFNELINNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEID 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++          +L  +           
Sbjct: 604 SVALRALNGKNLGIFNLPNLFKLMDELIEKK 634


>gi|296114661|ref|ZP_06833313.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978757|gb|EFG85483.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 603

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 146/429 (34%), Gaps = 41/429 (9%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A    H+ + R          + G   W P G      + A +R  Q     +E++ P 
Sbjct: 199 EAARRDHRRLGREMDLFHFQPEAPGAVFWHPNGWTLFQTLLAYLRARQQAENYVEINTPD 258

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW  SG ++ +G+ M    +   +     P +      +FR  +KSYR+LP    
Sbjct: 259 IMDLSLWQASGHWEKFGENMFT-TETEGRTYALKPMNCPGGVQVFRHGLKSYRDLPLRMA 317

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R E      G+MR R F   DA+ F  TPE  +    ++    L I+   G   
Sbjct: 318 EFGKVHRFEPSGALHGLMRVRAFTQDDAHIF-CTPEQMEAETQRICHLVLSIYKDFGFDD 376

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           + ++    P     S E    ++    +   +        P E                 
Sbjct: 377 VRIKFSDRPEKRVGSDEIWDRSEEALRRGVEASGLSYTRNPGEG---------------- 420

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               A         L D++  + +     +++               A + GADG  H  
Sbjct: 421 ----AFYGPKLEFVLRDAIGRDWQCGTVQVDLNLPQRL--------DAHYIGADGDKHPP 468

Query: 313 QM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            M      G++     ++   H G    W   +AP ++ +  I A      +  + +   
Sbjct: 469 VMLHRALFGSLERFIGILLEHHAGHLPFW---LAPVQVVVATITA---AADNYADDLIKA 522

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V  D   E+I  +     L   P+ +IVG K      V I+   +     ++ 
Sbjct: 523 LRQRGVRVVPDLRNEKIAYKVREHSLAKVPVLLIVGKKEAEAGTVSIREYGSPDTPTIAT 582

Query: 432 EEVINYASH 440
           E  I+  + 
Sbjct: 583 ETAIDLLAS 591


>gi|330685703|gb|EGG97342.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 523

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 165/446 (36%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L          G+  WLP G      +   I +++  
Sbjct: 107 KAHLEMLEERKERDHRKIGKDLELFAN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 165

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++ + M+  P +      ++ +  
Sbjct: 166 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMKLDETEEMVLRPMNCPHHMMVYNNKP 225

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 226 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 284

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +    R                  D  + + +   D M     +   +  D
Sbjct: 285 QDVYKDFGFEDYRFRLSYR--------------DPEDKEKYFDDDEMWNKAENMIKEAAD 330

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 331 ELG--LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----ELT 380

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 381 YIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVEIIPVNL--DL 435

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + I   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++ 
Sbjct: 436 HYDYAKSIQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRK 495

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 496 YGSQDQETLEKDEFIWNLVDEIRLKK 521


>gi|94498868|ref|ZP_01305406.1| prolyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94428500|gb|EAT13472.1| prolyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 584

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E+P DA + SH+LMLR GMI + + G+Y+WLPLG K L  V  ++REE
Sbjct: 1   MRASQYLVATLKESPSDAVVVSHQLMLRAGMIRKLASGLYTWLPLGLKTLRKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q A+LW ESGR+  YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGAQEVLMPAVQPAELWEESGRWFEYGGELLRLKDRHNRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREF+MKDAYSF +  +  + +Y++M  +
Sbjct: 121 ELNSYKQLPSNFYQIQTKFRDETRPRFGVMRSREFIMKDAYSFHIDGDSLQQTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL   P+ A++G IGG +SHEF VLA +GE  +  S 
Sbjct: 181 YTNIFTRLGLDFRPVAADTGSIGGAVSHEFHVLAQSGEDDIAFSN 225



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 5/189 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D    +    +  A      D+ N    D+ P+ +      RGIEVGHIF  GTKYS  
Sbjct: 372 QDGKHYSGANWERDAHIDRIEDLRNVVEGDASPDGQGTLEIKRGIEVGHIFQLGTKYSEA 431

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
           + A     +GK+  + MG YGIG  RVVAA IE +HD +GIIWP+++APF++S++ I A 
Sbjct: 432 LGAKVLDENGKEKTMMMGCYGIGVSRVVAAAIEQNHDDRGIIWPEAIAPFQVSIVQIDAQ 491

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +      E++Y  L+ +G DVF DD  ++   G +FA ++L+G P +V++ S+ +   
Sbjct: 492 KSEDVVKYSEELYESLTALGVDVFLDDRDKKTSPGVKFADSELMGIPHRVVLSSRGLKAG 551

Query: 415 KVEIKHRLT 423
           K E KHR  
Sbjct: 552 KAEYKHRKD 560


>gi|145598925|ref|YP_001163001.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|166980173|sp|A4TL66|SYP_YERPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145210621|gb|ABP40028.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides F]
          Length = 572

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLALPLVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEVM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E++ +   +  
Sbjct: 546 YKNRRVGEKQMIKTSEIVEFLLSQIK 571


>gi|119774298|ref|YP_927038.1| prolyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|152016599|sp|A1S4R2|SYP_SHEAM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119766798|gb|ABL99368.1| prolyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 572

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q  DLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPGDLWVETGRWDQFGPELLRFTDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF LT E    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLTQETLDETYQAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNIFSRMGLAFRPVLADTGSIGGSVSHEFHVLAQSGEDLIAYS 224



 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    ++ P+ K   A  RGIEVGHIF  G KYS  M
Sbjct: 365 DGKHFFGINWERDLPLVQGADIRNVVEGEATPDGKGTYAFARGIEVGHIFQLGNKYSEAM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE ++D +GI+WP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQIMLMGCYGVGVSRIVAAAIEQNNDERGIVWPEAIAPFTVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E +Y  L++ G +V +DD  E+ G  FA  +LLG P  V++G + +     E
Sbjct: 485 SHRVTDTAEALYKELTEAGFEVLFDDRKERPGVMFADMELLGIPHTVVIGDRNIDTGVYE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R TG + ++   E++++   +F  
Sbjct: 545 YKNRRTGEKTEVPFAELVSFLKAQFQQ 571


>gi|33152900|ref|NP_874253.1| prolyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|81836009|sp|Q7VKI5|SYP_HAEDU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33149125|gb|AAP96642.1| prolyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 571

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVISHQLMLRAGMIRPTAAGLYNWLPTGVKILKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ES R++ YG E+LR ADR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEILMPVVQPAELWQESSRWEQYGPELLRFADRGKRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  TPE  + +Y  M+  
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTPESLQQTYEVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YHRIFTRLGLDFRTVQADTGSIGGSASHEFQVLASSGEDDIVFS 224



 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  Q         D+ N  + D  P+ + +    RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYLNINWQRDVVLPEVFDLRNVVVGDPSPDGRGILLIKRGIEVGHIFQLGQKYSAAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKA- 356
           +AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +   
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPTDEIAPFTVAIVPMNMF 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +   E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G K + + +V
Sbjct: 484 KSASVQAFAEQLYTDLMAQGVDVILDDRKERPGVMFADMELIGVPHMIVIGEKNLENGEV 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG +  ++ ++++ Y +    
Sbjct: 544 EYKNRRTGEKTMIAKDQLLAYLAQNVR 570


>gi|89100585|ref|ZP_01173444.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084689|gb|EAR63831.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 423

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 161/432 (37%), Gaps = 42/432 (9%)

Query: 15  PRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
             +AE  +H+ +   L   M  + + G+  +LP G +  + +  + +++ ++ G  E+  
Sbjct: 23  KAEAEKRNHRKLGAELELFMFREEAPGMPFYLPKGMQVRNILENLWKQKHHKAGYHEVKT 82

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    LW +SG +D Y + M   +  ++      P        I+ S  +SYR LP  
Sbjct: 83  PIMMKQALWEQSGHWDHYHENMY-FSKVDEHDYAIKPMSCPGAVLIYSSKRRSYRELPLR 141

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++ L  R EL     G++R R F   DA+ F +  +  K    K+       +   G 
Sbjct: 142 YAELGLVHRHELSGSLNGLLRVRSFTQDDAHLF-VREDQIKEEAAKVLELVHEFYSLFGF 200

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +   +   + P     S E   LA+     V   +         +               
Sbjct: 201 EY-KVELSTRPEEFMGSEETWNLAEASLESVLQERGIPFEINSGDG-------------- 245

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      +  + DSL  + +     ++      FG          + G D   H
Sbjct: 246 ------AFYGPKIDFHITDSLGRSWQCGTVQLDFQMPEQFG--------CQYIGEDNLAH 291

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +     G++    A++   + G    W   ++P +  ++ +    +       ++ 
Sbjct: 292 RPIMIHRAIYGSIERFLAILIEHYAGDFPFW---LSPVQAMVLPV---SEAHIGYALEVK 345

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ARL + GC +  D   E++G +   A+L   P  +I+G K +      ++ +  G    +
Sbjct: 346 ARLEEAGCRIDIDSRAEKLGLKIREAELQKVPYMIIIGEKEIEQGGAALRKKGAGNLGVL 405

Query: 430 SLEEVINYASHR 441
            L+E+++     
Sbjct: 406 HLQELLDRFRDE 417


>gi|71083144|ref|YP_265863.1| threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123734387|sp|Q4FNH9|SYT_PELUB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71062257|gb|AAZ21260.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 638

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 150/441 (34%), Gaps = 39/441 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      ++ L      + S G   W   G K    + A +R  Q 
Sbjct: 229 LDEYLKRIEEAEKRDHRKLGKEMDLF--HFREESPGSVFWHEKGWKLFQKLVAYMRARQE 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E++ P +    LW +SG ++ YG+ M      ++K     P +      +F   +
Sbjct: 287 KAGYKEVNTPEILDRSLWEKSGHWEKYGEHMYTSQTPDEKIFAIKPMNCPGHVQVFNQGL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G++R R F   DA+ F  T +        +    
Sbjct: 347 KSYRDLPLRISEFGKVHRYEPSGALHGLLRVRAFTQDDAHIF-CTEDQITSECLIVTNLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I+  LG + + ++    P            A+        +          E      
Sbjct: 406 LDIYKDLGFEDVILKYSDRPDLRVGDDNVWDKAEKALLDAVKASKLQYTINKGEG----- 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A         L D++  + +     +++               A+
Sbjct: 461 ---------------AFYGPKIEFVLRDAIGRDWQCGTLQVDLNLPGRL--------DAS 497

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           F   DG K   V +     G++     ++  ++ GK   W   +AP ++ +I I    + 
Sbjct: 498 FVDKDGTKKIPVMLHRALFGSLERFIGILIENYAGKFPFW---IAPLQVVVIPI---SEE 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +++  G     D     +  +     L   PL +I G K V  + V I+ 
Sbjct: 552 FDSYAKEVNEKINNAGISSEVDLKNHNLNYKIREHSLSKIPLLLICGKKEVDSNSVTIRR 611

Query: 421 RLTGIREDMSLEEVINYASHR 441
             T  +E+M L   +   S  
Sbjct: 612 LDTNKQENMELNLFLETFSAL 632


>gi|288801328|ref|ZP_06406782.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331711|gb|EFC70195.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 654

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 157/451 (34%), Gaps = 46/451 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y L I +   RD      ++ L      +  KG+  WLP G +    +  ++R+ Q 
Sbjct: 230 LDEYLLMIEEAKKRDHRKIGKEMELFM-FSDRVGKGMPIWLPKGTELRLRLQDMLRKIQK 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
           R G  E+  P L   +L+V SG Y  Y K+  R        +  +  P +     ++F  
Sbjct: 289 RFGYQEVMCPVLGGKNLYVTSGHYAHYSKDAFRPITTPEEGEEYMLKPMNCPHHCEVFAW 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +    +R E      G+ R R F   DA+ F   PE  K+ + ++  
Sbjct: 349 KPRSYKDLPLRISEFGNVYRYEKSGELHGLTRVRAFTQDDAHIF-CRPEQVKNEFLRVMD 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +      K+   +                  D    + +   D           D 
Sbjct: 408 IIQAVLKIFDFKNFEAQISLR--------------DPNNKEKYIGSDEAWHEAEQAIIDA 453

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSL 296
                L                  +E    +    K        +G  +  GT    Y+L
Sbjct: 454 CKEKGL---------------TAKSELGEAAFYGPKLDFMIKDAIGRRWQLGTIQVDYNL 498

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +   D  K   V +     G++    AV+     G   +W   + P +++++ 
Sbjct: 499 PQRFKLEYTDEDNQKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAILP 555

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +   D   ++       G     DD  E+IG +    +L   P  VIVG K  ++
Sbjct: 556 I---SEKYNDYAREVARFFDNNGVRATIDDRNEKIGRKIRDNELKRVPYMVIVGEKESAE 612

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V ++ +  G +  M+ +E ++  +   + 
Sbjct: 613 GLVSMRKQGGGEQATMTQQEFVDRVNGEVAE 643


>gi|22126985|ref|NP_670408.1| prolyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45442549|ref|NP_994088.1| prolyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108806542|ref|YP_650458.1| prolyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108813091|ref|YP_648858.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|149366930|ref|ZP_01888963.1| prolyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162418775|ref|YP_001607747.1| prolyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165927072|ref|ZP_02222904.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939831|ref|ZP_02228371.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011913|ref|ZP_02232811.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211331|ref|ZP_02237366.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400131|ref|ZP_02305649.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419446|ref|ZP_02311199.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425324|ref|ZP_02317077.1| prolyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470133|ref|ZP_02334837.1| prolyl-tRNA synthetase [Yersinia pestis FV-1]
 gi|218928237|ref|YP_002346112.1| prolyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229837776|ref|ZP_04457936.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229840998|ref|ZP_04461157.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843099|ref|ZP_04463249.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903534|ref|ZP_04518647.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270487315|ref|ZP_06204389.1| proline--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503084|ref|YP_003567146.1| prolyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|116256081|sp|Q7CH25|SYP_YERPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123246276|sp|Q1CFH2|SYP_YERPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123372686|sp|Q1CAK9|SYP_YERPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701361|sp|A9R371|SYP_YERPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21960030|gb|AAM86659.1|AE013912_3 proline tRNA synthetase [Yersinia pestis KIM 10]
 gi|45437414|gb|AAS62965.1| prolyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108776739|gb|ABG19258.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|108778455|gb|ABG12513.1| prolyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|115346848|emb|CAL19734.1| prolyl-tRNA synthetase [Yersinia pestis CO92]
 gi|149290544|gb|EDM40620.1| prolyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162351590|gb|ABX85538.1| prolyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165912234|gb|EDR30871.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920968|gb|EDR38192.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989179|gb|EDR41480.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207102|gb|EDR51582.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962187|gb|EDR58208.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050839|gb|EDR62247.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055724|gb|EDR65508.1| prolyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679304|gb|EEO75407.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229689975|gb|EEO82034.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229697364|gb|EEO87411.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229704153|gb|EEO91165.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361122|gb|ACY57843.1| prolyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365363|gb|ACY61920.1| prolyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270335819|gb|EFA46596.1| proline--tRNA ligase [Yersinia pestis KIM D27]
 gi|294353543|gb|ADE63884.1| prolyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320014203|gb|ADV97774.1| prolyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 572

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHYFGINWERDLALPLVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEVM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E++ +   +  
Sbjct: 546 YKNRRVGEKQMIKTSEIVEFLLSQIK 571


>gi|78222623|ref|YP_384370.1| threonyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|78193878|gb|ABB31645.1| Ser-tRNA(Thr) hydrolase [Geobacter metallireducens GS-15]
          Length = 645

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 153/445 (34%), Gaps = 44/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G   W P G      +    R+E  + G
Sbjct: 241 YLERIEEAKRRDHRKLGRELDLFS-FSDEVGAGFVIWHPNGAMLRTILEDFERKEHLKRG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG YD+Y + M    +  +++    P +      I++SH++SY
Sbjct: 300 YDIVVGPQILKTDLWQRSGHYDNYRENMY-FTEVEEQSFGIKPMNCLSHMMIYKSHLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F+++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 359 RDLPLRFFELGTVHRHERAGVLHGLLRVRCFTQDDAHIL-CTPEQLDDEIKGVISFVNDV 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +   M   + P     S E    A                   +      D   
Sbjct: 418 MGIFGFEF-EMELSTRPEKSIGSDEDWERA-----------------TNALLGALKDSGR 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              I E   A Y    D+      D          R  +   I      ++LP     T+
Sbjct: 460 PYEINEGDGAFYGPKIDIKLRDSLD----------RRWQCATI---QCDFTLPERFDLTY 506

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG+     M     +G++     V+     G   +W   ++P +  ++ +  + Q  
Sbjct: 507 VDADGERKRPVMVHRVILGSIERFIGVLIEHFAGNFPVW---LSPVQAIVMTVTDNQQS- 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +++  L   G  V  D   E++G +   A L   P  +++G K V    V  + R
Sbjct: 563 --YAAQVFEALRSSGIRVRKDFRNEKLGFKIREAQLQKIPYMLVIGDKEVESGTVTPRFR 620

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M  EE + + +      +
Sbjct: 621 DGSNLAAMKPEEFVVFINEDVKRFK 645


>gi|299135910|ref|ZP_07029094.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298602034|gb|EFI58188.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 680

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 155/446 (34%), Gaps = 43/446 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F  + +   RD  +   +L L +  I + +  G+  W P G      +   +R E  R G
Sbjct: 267 FKHLEEIKARDHRVLGKQLDLFS--IQEVAGAGLIFWHPKGGLIRKTMEDWMRAECVRRG 324

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG    Y   M    + +D      P +      I+++  KSY
Sbjct: 325 YNLVVTPHIMRRELWKISGHEGYYSDNMYPPMELDDAEYRLKPMNCPGHILIYKNSPKSY 384

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++   +R E      G++R R F   DA+ F  TP+  +            +
Sbjct: 385 RDLPVRYAELGNVYRYERSGTMHGLLRVRGFTQDDAHIF-CTPDQIEDEVVACIEFAQSV 443

Query: 185 FHRLGLKSIPMRAES----GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               G     +   +     P     S +    A          K+     IP       
Sbjct: 444 LTTFGFADFKVELSTWDPKKPQDYTGSADHWATAINSLKTALGRKNIPFVEIPG------ 497

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + KL D L    ++S    +    F    ++      
Sbjct: 498 --------------EAAFYGPKIDVKLVDVLGRLWQLSTVQFD----FNLPARF----EL 535

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG+ H   M      G++     V+   + G   +W   +AP ++ L+ I   ++
Sbjct: 536 EYIGEDGERHRPVMVHRALFGSVERFFGVLIEHYAGAFPMW---LAPVQVGLVPIS--NE 590

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E + ARL   G  V  D    ++ ++     L  FP  +++G K  +   V ++
Sbjct: 591 KHLAYAESVKARLEAAGLRVELDGGNGKMNAKIRDFGLQKFPFILVLGDKEAASDSVSVR 650

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G    ++++E I  A      +
Sbjct: 651 VRAKGDEGSVTVDEFIARAKKLVDGH 676


>gi|332307477|ref|YP_004435328.1| prolyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174806|gb|AEE24060.1| prolyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 571

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 162/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR G++ + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGLVRKLASGLYTWLPTGLRVLNKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q ADLW ESGR+D YG E+LR+ DR+ +  + GPTHEEV+T + ++
Sbjct: 61  MDRAGSLEILMPVVQPADLWQESGRWDEYGPELLRVKDRHFRDFVLGPTHEEVVTALVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSF L+ E    +Y++MF +
Sbjct: 121 EVSSYKQLPLNVYQIQTKFRDEVRPRFGVMRGREFTMKDAYSFHLSDECLNKTYDEMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y R+F R+ L+  P+ A++G IGG+ SHEF VLA++GE  +  S 
Sbjct: 181 YCRVFERINLEFRPVIADNGSIGGNASHEFHVLAESGEDDIAFSN 225



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 112/194 (57%), Gaps = 3/194 (1%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             +  A     +D+ N +  D  P+ K      RGIEVGHIF  G+KYS  ++      +
Sbjct: 376 NWERDAKEYQQADIRNVQAGDPSPDGKGTLEIKRGIEVGHIFQLGSKYSEALNCGVLDEN 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   + MG YGIG  R+VAA IE +HD  GIIWPD++APFK++++ +  H     +   
Sbjct: 436 GKHQVLNMGCYGIGVSRIVAAAIEQNHDKYGIIWPDAIAPFKVAIVPMNMHKSHRIQQVA 495

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E++YA+L   G +V +DD  E+ G  F   +L+G P  +++G + + + KVE K+R +G 
Sbjct: 496 EQMYAQLKAAGIEVLFDDRKERPGVMFNDMELVGVPHTIVIGERNLDEQKVEYKNRRSGE 555

Query: 426 REDMSLEEVINYAS 439
           ++ + + ++ ++ +
Sbjct: 556 KQLIDIPQIADFIA 569


>gi|254516715|ref|ZP_05128774.1| prolyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219675138|gb|EED31505.1| prolyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 571

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +   +E P DAEI SH+LMLR G+I + S G+Y+W+P+G K L  V  ++REE
Sbjct: 1   MRSSEFLITTHKETPADAEIVSHRLMLRAGLIRKLSSGLYTWMPMGLKVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+EM++P +Q A+LW ESGR++ YG E+LR+ DR+++    GPTHEEV+TDI R+
Sbjct: 61  MDAAGALEMAMPMVQPAELWQESGRWEQYGPELLRIQDRHNRDFCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K RDE+RPRFG+MR+REFLMKDAYSF       + +Y  M  +
Sbjct: 121 EISSYKQLPLNLYQIQNKVRDEIRPRFGIMRAREFLMKDAYSFHSDQASLEETYQVMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F RLGL   P+ A+SG IGG+ SHEF VLAD+GE  +  S       
Sbjct: 181 YSRVFERLGLDFRPVMADSGSIGGNTSHEFHVLADSGEDAIAFSDSSDYAA 231



 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 104/176 (59%), Gaps = 1/176 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +      RGIEVGHIF  GTKYS  M+A     +G++  + MG YGIG  R+VAA I
Sbjct: 394 PDGQGSLQIRRGIEVGHIFQLGTKYSEAMNARVLDENGRNVTISMGCYGIGVSRIVAAAI 453

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E +HD +GIIWP+++ PF+++++ +  H      +A E ++A+  + G DV  DD  E+ 
Sbjct: 454 EQNHDDRGIIWPNAMTPFQLAIVPLNMHKSTAVAEAAEALHAQCLEEGIDVLMDDRNERP 513

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +FA  +LLG P ++++G + +++ ++E + R     + + + + + + + +  +
Sbjct: 514 GVKFADMELLGIPHRIVIGDRSLAEGELEYQGRRDSEAQRVPVAQAMKFLTDQLEH 569


>gi|325103180|ref|YP_004272834.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Pedobacter
           saltans DSM 12145]
 gi|324972028|gb|ADY51012.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Pedobacter
           saltans DSM 12145]
          Length = 642

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 164/447 (36%), Gaps = 40/447 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I +   RD      +L L T    +   G+  WLP G    + + + +++ Q 
Sbjct: 228 LTEYIQRIEEAKKRDHRKLGKELELFT-FSEKVGLGLPLWLPKGTALRERLVSFLQKAQQ 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +   +L++ SG YD YG +  +     +  +     P +     +I++S
Sbjct: 287 KAGYDQVITPHIGHKNLYITSGHYDKYGADSFQPIKTPQEGEEFFLKPMNCPHHCEIYKS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG      +                  D      +   D       +   + 
Sbjct: 406 LVLYVFKALGFDEYIAQVSLR--------------DPENKSKYIGSDENWILAENAIIEA 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                L ++VE   A +                  K    R  ++G I      Y+LP  
Sbjct: 452 AAEKGLPTVVETGEAAFYGPKLDF---------MVKDALGRKWQLGTI---QVDYNLPER 499

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G+D + H  V +     G++    AV+     G   +W   + P +  ++ I  
Sbjct: 500 FELEYTGSDNQKHRPVMIHRAPFGSLERFVAVLIEHCAGNFPLW---LTPEQFIVLPI-- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   +  +K+   L+        D   E+IG +   A++   P  +I+G K + D  V
Sbjct: 555 -SEKFEEYGKKVLDSLNNSDIRGLIDLRDEKIGRKIRDAEVKKLPYMLIIGEKEMQDGMV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++    G +  M++EE  +       
Sbjct: 614 SVRKHGEGDKGSMTIEEFKSLLLDEIK 640


>gi|218282135|ref|ZP_03488434.1| hypothetical protein EUBIFOR_01014 [Eubacterium biforme DSM 3989]
 gi|218216861|gb|EEC90399.1| hypothetical protein EUBIFOR_01014 [Eubacterium biforme DSM 3989]
          Length = 587

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 156/448 (34%), Gaps = 42/448 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR-TGM--IHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +K  L    E   +A+   HK + +  G+  I + + G+  +LP G    + +     +E
Sbjct: 171 TKEELEAHLEALEEAKKRDHKKLGKEMGLFTISEFAPGMPIFLPDGMILRNILEQYWYQE 230

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P + S +LW  SG +D Y   M      +D+     P +      ++ S
Sbjct: 231 HTKEGYQFIKTPIMMSKELWELSGHWDHYKDNMYTSMV-DDREFAIKPMNCPGALLVYNS 289

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SY++LP    ++    R E      G+ R R F   DA+ F +TP+  +    K+  
Sbjct: 290 TLHSYKDLPLRLGELGQVHRHEASGALNGLFRVRTFTQDDAHLF-VTPDQLEEEVKKVLQ 348

Query: 180 SYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              RI+   GL    +   + P  G   S E   +++    Q            P +   
Sbjct: 349 LVDRIYSVFGLPY-EIELSTRPESGYIGSEEIWDVSEKALAQACVHAGKEYKVNPGDGAF 407

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   + +                             K    R  + G +           
Sbjct: 408 YGPKLDI---------------------------HIKDSLGRVWQCGTV-QLDMNLPERF 439

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  ADG K   + +     G++     ++     G   +W   +AP +  +I +  H
Sbjct: 440 ECKYVDADGTKKTPIMLHRVVYGSVERFIGILIEHFGGHFPLW---LAPRQFVVIPV--H 494

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   K+   L+ +G     D   E++G +   A L     Q++VG     ++ V 
Sbjct: 495 HEKHVEYANKVCDALTALGMRATVDSRNEKLGYRVREAQLQKVTYQIVVGDGEQENNTVT 554

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+         +SL E +        N 
Sbjct: 555 IRQSGKKDSVTLSLNEALAKFKAEVDNK 582


>gi|222055493|ref|YP_002537855.1| prolyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|254782902|sp|B9LZK1|SYP_GEOSF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221564782|gb|ACM20754.1| prolyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 570

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/231 (54%), Positives = 166/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SH+LMLR GMI + + G+Y++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHQLMLRGGMIRKLAAGVYNYLPLGLRSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PT+Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPTVQPAELWQESGRWEQYGKELLRFRDRKDTEFCLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  + +  SY+KM+ +
Sbjct: 121 EVKSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVDEKAADISYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A++G IGG  SHEF+VLA++GE  +          
Sbjct: 181 YRRIFERCGLKFRAVEADTGSIGGSWSHEFMVLAESGEDAIVSCTACDYAA 231



 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLN----SIVEQWTAPYAATSDVHNEKLFDSLPENK-- 275
             +K   D  +           + +    ++           +D+ N  L D  P  +  
Sbjct: 338 LKAKIIADLAVQGMKNFVTGANAKDLHLKNVNLGRDFNVTTFADIRNVVLGDPCPRCESG 397

Query: 276 -RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RGIEVGH+F  GTKYS  M AT+  ADGK+  + MG YGIG  R VAA IE +HD
Sbjct: 398 TLEMWRGIEVGHVFKLGTKYSKAMKATYLDADGKEQIIFMGCYGIGIGRTVAACIEQNHD 457

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GII+P  +APF   +  +   + V R+A E IY +L+  G +V  DD  E+ G +F  
Sbjct: 458 ENGIIFPLPIAPFHCIISALNMKEDVVREASEAIYGQLAAAGIEVLLDDRDERPGFKFKD 517

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ADL+G P++++VGSK ++D KVE+K R +G  E +S+ + +       +
Sbjct: 518 ADLIGIPMRIVVGSKNLADGKVELKCRRSGEVELLSIADAVEKVKAAVN 566


>gi|323700409|ref|ZP_08112321.1| prolyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323460341|gb|EGB16206.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 580

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 168/231 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P DAE+ SHKL++R GMI + + GIY++LPLG +A++ V  I+REE
Sbjct: 1   MRLSRYYIPTLKEDPADAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLRAINKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +PT+Q ADLW E+GR+D YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLLPTVQPADLWRETGRWDYYGKELLRFKDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFD    G++ SY  MF +
Sbjct: 121 EIKSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDGYSFDKDEAGAEQSYWDMFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y   F R+GL+  P++A+SG IGG  SHEF+VLA+TGE  +          
Sbjct: 181 YKAAFTRIGLRFKPVQADSGAIGGSFSHEFMVLAETGEDTIASCLSCDFAA 231



 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D+ PE        +GIEVGH+F  G KYS  M ATF   +GK  Y+ MG YGIG  R+VA
Sbjct: 393 DACPECGGAIEFTKGIEVGHVFKLGLKYSKKMEATFLDENGKSQYMIMGCYGIGVSRIVA 452

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + IE + D  G  +P S+APF++ LI++   DQ   D  E++YA L K+G DV +DD GE
Sbjct: 453 SAIEQNFDENGCCFPPSIAPFEVCLISLGGKDQDVADKAEELYAELMKLGVDVAFDDRGE 512

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +FA ADL+G+P+Q+++G K + +  +E K R TG + ++ L+  
Sbjct: 513 RPGVKFAEADLIGYPMQLVLGGKGLKNGIIEAKDRKTGEKVELPLDTF 560


>gi|237716078|ref|ZP_04546559.1| threonyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262407690|ref|ZP_06084238.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294643798|ref|ZP_06721596.1| threonine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294808458|ref|ZP_06767211.1| threonine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229443725|gb|EEO49516.1| threonyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262354498|gb|EEZ03590.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292640887|gb|EFF59107.1| threonine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294444386|gb|EFG13100.1| threonine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 646

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 159/459 (34%), Gaps = 62/459 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y + + +   RD      +  ++  M  +   KG+  WLP G      +   +R  Q
Sbjct: 228 LDEYLILLEEAKKRDHRKIGKE--MQLFMFSETVGKGLPMWLPKGTALRLRLQEFLRRIQ 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFR 119
            R    E+  P + +  L+V SG Y  YGK+  +        +     P +     +I++
Sbjct: 286 TRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYK 345

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SY++LP    +     R E      G+ R R F   DA+ F   PE  K  + ++ 
Sbjct: 346 NFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPEQVKDEFLRVM 404

Query: 179 VSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +F  +  ++   +            IG D + E        E  +  +      P
Sbjct: 405 DIISIVFRSMDFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACAEKGLP 458

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                            E    +    K        +G  +  G
Sbjct: 459 AK------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLG 488

Query: 292 T---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + 
Sbjct: 489 TIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LT 545

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ ++ I    +   +  E++   L         DD  E+IG +    ++   P  +I
Sbjct: 546 PEQVVILPI---SEKFNEYAEQVKMYLKIHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLI 602

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VG K   + +V ++ +  G +  M  EE     +    N
Sbjct: 603 VGEKEAENGEVSVRRQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|227327749|ref|ZP_03831773.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 572

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVFS 224



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  G+KYS  +
Sbjct: 366 DGKHYFGINWERDVTLPQVADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H 
Sbjct: 426 KATVQGEDGRNQTLTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SFRVKEVAEDIYQQLRAKGIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R  G ++ +   E+I++     
Sbjct: 546 YKNRRGGEKQMIKTSEIIDFLLANI 570


>gi|166365900|ref|YP_001658173.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088273|dbj|BAG02981.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 618

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 155/449 (34%), Gaps = 40/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
              Y     +   RD      +L L +  I +    G+  W P G      +    R+  
Sbjct: 207 LQNYLQQKEEAQRRDHRKLGQQLKLFS--IQEDAGGGLVFWHPRGATMRYLIEDYWRQAH 264

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P L + DLW  SG +D Y   M    +   ++    P +       +++ 
Sbjct: 265 LEAGYQFLYTPHLANLDLWKTSGHWDFYRDNMFEAIELEQQSYQIKPMNCPFHVLTYQND 324

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR  P  + ++   +R E      G+MR R F   DA+ F L PE        +   
Sbjct: 325 LHSYREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCL-PEQIAAEILGVLNL 383

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +I    G  +  +   + P     S     LA     +   +K +             
Sbjct: 384 TEKILSDFGFTNYQINLSTRPSKSVGSDSVWELATAALIEALNAKKWDYIEDQGGG---- 439

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D++    + S   ++    F    ++      
Sbjct: 440 ----------------AFYGPKIDIKIQDAIGRMWQCSTIQVD----FNLPERF----DM 475

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG ++  + +     G++     ++  ++ G   +W   +AP ++ L+ +    Q
Sbjct: 476 QYVARDGTRERPIMIHRAIFGSLERFFGILIENYAGDFPLW---LAPIQVRLLPVSDEQQ 532

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +  +L + G  V  D  GE++G Q    +L   P+  ++G + VS   + ++
Sbjct: 533 H---YALGVAMQLKQAGYRVEIDKTGERLGKQIRTGELEKIPVLAVIGKREVSSKTLSVR 589

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R  G    M+L +++        +   +
Sbjct: 590 TRQGGDLGSMTLVDLLGKMQTAILSKTNL 618


>gi|321313312|ref|YP_004205599.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320019586|gb|ADV94572.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 638

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 157/441 (35%), Gaps = 42/441 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 235 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 DEVRTPFMMNQRLWEQSGHWDHYRDNMY-FSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F +  +  +    +       ++
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIF-VREDQIESEIKEAIRLIDEVY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P            ++    +V             +          
Sbjct: 411 RTFGFEY-SVELSTRPEDSLGDDSLWEASERALARVLEELGLSYEINEGDG--------- 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                      A      +  + D+L  + + +   ++    F    K+      T+   
Sbjct: 461 -----------AFYGPKIDFHIKDALKRSHQCATIQLD----FQMPEKF----DLTYINE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +     G++     ++   + G   +W   +AP ++ +I +     V  D 
Sbjct: 502 HNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVW---LAPIQVQIIPV---SHVHLDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++     
Sbjct: 556 CRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGHQ 615

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E +S +   +    +  N 
Sbjct: 616 QNEHVSFQTFKDKLVKQVENR 636


>gi|301065031|ref|ZP_07205376.1| proline--tRNA ligase [delta proteobacterium NaphS2]
 gi|300440880|gb|EFK05300.1| proline--tRNA ligase [delta proteobacterium NaphS2]
          Length = 575

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/231 (54%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YF+P  +E P DAEI SH+LM+R GMI + + GIY++LP+G K++  V  I+REE
Sbjct: 1   MRYSSYFIPTKKEIPADAEIISHQLMIRAGMIRKLTSGIYTYLPVGLKSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIEVLMPAVQPAELWQESGRWEYYGRELLRFKDRHDRDACMGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ +P   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY  M+ +
Sbjct: 121 EIHSYKQMPINLYQIQTKFRDEIRPRFGIMRGREFIMKDAYSFDVDEAGANRSYEAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A+SG IGG  SHEF+VLAD+GE Q+          
Sbjct: 181 YERIFQRCGLKFRAVEADSGTIGGSYSHEFMVLADSGEDQIVNCATCSYAA 231



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 96/174 (55%), Gaps = 2/174 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 D  P         RGIEVGH+F  G KYS  M A F    GK+  + MG YGIG
Sbjct: 386 RTIAEGDPCPRCGGAMSFGRGIEVGHVFKLGVKYSEAMKALFLNEQGKELPMIMGCYGIG 445

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VAA IE +HD  GI++P  VAPF++S++ ++ H+    +A +KIY  L K G D  
Sbjct: 446 IGRTVAAAIEQNHDENGIVFPIPVAPFEVSILPLQMHNDHVVNAADKIYEELMKSGIDAL 505

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            DD  E+ G +F  ADLLG P+++ VGS+ + + +VE+K R       + L+  
Sbjct: 506 LDDRDERAGVKFNDADLLGIPVRITVGSRGLKNGEVEVKLRSEAESFTVPLDNA 559


>gi|78778982|ref|YP_397094.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
 gi|123755107|sp|Q31BT7|SYT_PROM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78712481|gb|ABB49658.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 638

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 159/451 (35%), Gaps = 49/451 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  ++E    AE   H+ + +      I + S G+  W P G      +   IR
Sbjct: 226 KELKDYLTRIEE----AEKRDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E   +   +E+  P      LW +SG ++ +  +M   A  N +     P +      +F
Sbjct: 282 EILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTASEN-RTYAIKPMNCPCHIQLF 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSY++LP    +     R+E      G+MR R F   DA+ F    E  +   +  
Sbjct: 341 NQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIF-CKEEQIQEEVSTF 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G   I ++  + P     S E    ++   T+   +K+      P E  
Sbjct: 400 IDLVFEVYKTFGFDEIIIKLSTRPEKRVGSEEIWDKSEEALTKALDNKNLKWELQPGEGA 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I  +                            K    R  + G I      +S+P
Sbjct: 460 FYGPKIEFSL---------------------------KDCLNRVWQCGTI---QVDFSMP 489

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   D  K + V +    +G+      ++   ++ K  IW   +AP++I L++I
Sbjct: 490 IRLEATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIW---LAPYQIILLSI 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +    + C K    ++  G     D   E+IG +   A +   PL  ++G K     
Sbjct: 547 TDRN---NEKCLKFNELINNNGYRSKVDIRNEKIGYKIREATISRIPLIAVIGDKEEEID 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++          +L  +           
Sbjct: 604 SVALRALDGTNLGIFNLPNLYKLMDELIDKK 634


>gi|260911583|ref|ZP_05918168.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634289|gb|EEX52394.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 654

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 164/449 (36%), Gaps = 41/449 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R+ 
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQDMLRKI 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F
Sbjct: 287 QKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    +R E      G+ R R F   DA+ F   PE  K+ + ++
Sbjct: 347 AWKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIF-CRPEQVKNEFLRV 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F      +   +                  D   T  +      D        
Sbjct: 406 MDIIQAVFKIFQFDNFEAQISLR--------------DPNNTTKYIGS---DEVWEESEQ 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D      +  +     AA      +         K    R  ++G I      Y+LP
Sbjct: 449 AIIDACKEKGLDAKIAYGEAAFYGPKLDF------MVKDAIGRRWQLGTI---QVDYNLP 499

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   D  K   V +     G+M   +AV+     G   +W   + P +++++ I
Sbjct: 500 ERFKLEYTAEDNTKKTPVMVHRAPFGSMERFSAVLIEHTTGHFPLW---LIPDQVAILPI 556

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  +++   L  VG     D   E+IG +    ++   P  VIVG K   + 
Sbjct: 557 ---SEKFNDYAQRVAKYLDSVGVRATLDVRNEKIGRKIRDNEIKRVPYMVIVGEKEAEEG 613

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V ++ +  G +  M++EE     +   +
Sbjct: 614 LVSMRKQGGGEQATMTMEEFAKRINDEVA 642


>gi|158299584|ref|XP_319682.4| AGAP008929-PA [Anopheles gambiae str. PEST]
 gi|157013587|gb|EAA14818.5| AGAP008929-PA [Anopheles gambiae str. PEST]
          Length = 761

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 157/440 (35%), Gaps = 43/440 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + +       H+ S G   + P G    + +   IR E  + 
Sbjct: 348 LKEWEKIQEEAAKRDHRKLGKEQELFFFHELSPGSCFFQPKGAHIYNTLMGFIRSEYRKR 407

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW  SG +  Y + M        +     P +      +F    +S
Sbjct: 408 GFQEVISPNIYNAKLWQTSGHWQHYAENMFSFESEK-ETFALKPMNCPGHCLMFDHRNRS 466

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F + P+  +            
Sbjct: 467 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCM-PDQIREEITGCLDFLRH 525

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+                 P +        
Sbjct: 526 VYTIFGFTFNLV-LSTRPEKYLGEIEVWNEAEKALADSLDKFGEPWKENPGDG------- 577

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L  N + +   ++    F    +++L     + 
Sbjct: 578 -------------AFYGPKIDITIMDALKRNHQCATIQLD----FQLPIRFNL----NYI 616

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +        
Sbjct: 617 DDSGEKKRPVIIHRAVLGSVERMIAILTENYAGK---WPFWLSPRQVMVVPVGP---AYD 670

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D  +++  RL + G  V  D D G+ +  +   A L  F   ++VG K  S   V ++ R
Sbjct: 671 DYADQVRQRLHEAGFMVEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTR 730

Query: 422 LTGIREDMSLEEVINYASHR 441
              +  ++++ +++   S  
Sbjct: 731 DNKVHGEVTVNDLVTKLSKL 750


>gi|157145208|ref|YP_001452527.1| hypothetical protein CKO_00941 [Citrobacter koseri ATCC BAA-895]
 gi|157082413|gb|ABV12091.1| hypothetical protein CKO_00941 [Citrobacter koseri ATCC BAA-895]
          Length = 652

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 146/444 (32%), Gaps = 44/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L    E   +AE   H+ + R         ++ G   W P G     ++ A +R 
Sbjct: 235 ASKKQLDGWLEKTAEAEKRDHRKLGRELDLFHFQDNAPGAVFWHPRGWTIFQSLIAYMRS 294

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G +E++ P +    LW  SG +D+Y   M      + +     P +      +F+
Sbjct: 295 RHEVAGYVEVNTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFK 354

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             IKSYR+LP    +     R E      G++R R F   DA+ F  T +  +     + 
Sbjct: 355 YGIKSYRDLPVRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTLQQVEGECKSIL 413

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I+ + G + + ++  + P     S       +   +    ++       P E   
Sbjct: 414 QLVLDIYKQFGFEEVAIKLSTRPEKRMGSDADWDRLENALSASLEAQGLQWSVNPGEGAF 473

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               +    R  + G         +LP 
Sbjct: 474 YGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDMNLPE 503

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG     V +     G++     ++   + GK   W   ++P +  ++ I 
Sbjct: 504 RFDIGYIAEDGSTKRPVMLHRALFGSLERFTGILLEHYVGKLPAW---LSPVQAVVMTIT 560

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++   L K G     D   E+IG       L   P  +IVG    + ++
Sbjct: 561 DKQHH---YAEQVLKALRKKGLRCEADLRNEKIGFIIREQTLARIPFLLIVGDAEENAAR 617

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           V ++ R       + L E  +   
Sbjct: 618 VTVRDRTGRCMGTLLLNEAADAIK 641


>gi|261822741|ref|YP_003260847.1| prolyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261606754|gb|ACX89240.1| prolyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 572

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQTTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVFS 224



 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  G+KYS  +
Sbjct: 366 DGKHYFGINWERDVALPQVADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H 
Sbjct: 426 KATVQGEDGRNQTLTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SFRVKEVAEDIYQQLRAKGIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R  G ++ +   E+I++     
Sbjct: 546 YKNRRIGEKQMIKTGEIIDFLLANI 570


>gi|160883804|ref|ZP_02064807.1| hypothetical protein BACOVA_01776 [Bacteroides ovatus ATCC 8483]
 gi|237722137|ref|ZP_04552618.1| threonyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|299149166|ref|ZP_07042227.1| threonine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|156110889|gb|EDO12634.1| hypothetical protein BACOVA_01776 [Bacteroides ovatus ATCC 8483]
 gi|229447947|gb|EEO53738.1| threonyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|298512833|gb|EFI36721.1| threonine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 646

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 159/459 (34%), Gaps = 62/459 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y + + +   RD      +  ++  M  +   KG+  WLP G      +   +R  Q
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKE--MQLFMFSETVGKGLPMWLPKGTALRLRLQEFLRRIQ 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFR 119
            R    E+  P + +  L+V SG Y  YGK+  +        +     P +     +I++
Sbjct: 286 TRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYK 345

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SY++LP    +     R E      G+ R R F   DA+ F   PE  K  + ++ 
Sbjct: 346 NFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPEQVKDEFLRVM 404

Query: 179 VSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +F  +  ++   +            IG D + E        E  +  +      P
Sbjct: 405 DIISIVFRSMDFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACAEKGLP 458

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                            E    +    K        +G  +  G
Sbjct: 459 AK------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLG 488

Query: 292 T---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + 
Sbjct: 489 TIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LT 545

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ ++ I    +   +  E++   L         DD  E+IG +    ++   P  +I
Sbjct: 546 PEQVVILPI---SEKFNEYAEQVKMYLKIHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLI 602

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VG K   + +V ++ +  G +  M  EE     +    N
Sbjct: 603 VGEKEAENGEVSVRRQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|262368848|ref|ZP_06062177.1| prolyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262316526|gb|EEY97564.1| prolyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 572

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+ EE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVAAIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGSLEVLMPVTQPASLWEESGRYVQYGPELLRFKDRHGNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPANFYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHSNQESLQETYDIMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCKIFTRLGLDFRPVQADTGSIGGSGSHEFHVLASSGEDDIAFS 224



 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 105/196 (53%), Gaps = 3/196 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A +    D+ N    D  P+ K      RGIEVGHIF  G KYS  +     G 
Sbjct: 377 LNWERDAQFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGQKYSEALGCKVLGE 436

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVA+ IE + D KGIIWP ++APF+++++ + AH      +A
Sbjct: 437 DGKPFTVTMGCYGIGVTRVVASAIEQNFDEKGIIWPAAIAPFEVAIVPMNAHKSPRSLEA 496

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L+  G DV  DD  E+ G +F+  +L G P ++++G K +     E K R   
Sbjct: 497 AEALYAELTTAGYDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRRDA 556

Query: 425 IREDMSLEEVINYASH 440
              ++S +E++   + 
Sbjct: 557 ESVNISKDELLAKIAK 572


>gi|242278211|ref|YP_002990340.1| prolyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259511591|sp|C6BYX7|SYP_DESAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|242121105|gb|ACS78801.1| prolyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 580

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 126/225 (56%), Positives = 169/225 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P +AE+ SHKL++R GMI + + GIY++LPLG K+++ V AI+REE
Sbjct: 1   MRLSRYYIPTLKEDPSEAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLKSVNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  DLW E+GR+D YGKE+LR+ DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLMPMVQPGDLWQETGRWDYYGKELLRVKDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EVKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDEAGAEESYRGMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y + F R+GL   P++A+SG IGGD SHEF VLADTGE  +   K
Sbjct: 181 YKKAFSRIGLNFRPVQADSGAIGGDFSHEFHVLADTGEDTIAVCK 225



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 104/174 (59%), Gaps = 2/174 (1%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE        +GIEVGH+F  G+KYS  M ATF   +GK   + MG YGIG  R+VA
Sbjct: 394 DPCPECGAAIEFTKGIEVGHVFKLGSKYSKSMEATFLDENGKTQPMVMGCYGIGVSRIVA 453

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + IE ++D  G I+P ++APF++ +I++   D+   +  E+ Y  L ++G D  +DD  E
Sbjct: 454 SAIEQNNDENGAIFPPTIAPFELCVISLGGKDEAVNEKAEEFYNELMEMGIDAAYDDRKE 513

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           + G +FA ADL+G+P+Q+++G K + +  VE K+R TG + ++ LE        
Sbjct: 514 RPGVKFADADLIGYPMQLVIGGKGLKNGIVEAKNRKTGEKIELPLEGFTEAFKA 567


>gi|297583666|ref|YP_003699446.1| threonyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297142123|gb|ADH98880.1| threonyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 649

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 173/440 (39%), Gaps = 35/440 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L +   +  +  +G+  WLP G      V   I + + R G
Sbjct: 234 YLQLLEERKERDHRKLGKELGIFA-VSQKVGQGLPLWLPKGATVRRQVERYIVDIEERLG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y  +M  +   +++ ++  P +      I+++   SY
Sbjct: 293 YDHVYTPVLGSVDLYKTSGHWDHYQDDMFPVLQMDNEDLVLRPMNCPHHMMIYKNEKHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           RNLP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++      +
Sbjct: 353 RNLPLRIAELGTMHRHEMSGALAGLQRVRAMTLNDAHIF-CRPDQLKDEFIRVVELIQAV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +K    R                  D  + + +   D M     +   +  D + 
Sbjct: 412 YKDFQIKDYYFRLSYR--------------DPEDKEKYVDNDEMWEKAQAMLKEAVDEMG 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  I  +     A      + ++  +L +++ +S   ++    F+   ++      T+ G
Sbjct: 458 VEYI--EADGEAAFYGPKLDVQVKTALGKDETLSTVQLD----FHLPNRF----DLTYTG 507

Query: 305 ADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKDH   +   G+ + M    A +   + G    W   +AP +  LI +     V  D
Sbjct: 508 EDGKDHRPVVIHRGVVSTMERFVAFLLEEYKGAFPTW---LAPVQAELIPVN---DVHLD 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G  V  D   E++G +   A +   P  +++G +   ++ V ++    
Sbjct: 562 YVRQVEDELKRAGVRVHVDVRNEKLGYKIREAQMQKVPYLLVLGDQERDNASVNVRRYGQ 621

Query: 424 GIREDMSLEEVINYASHRFS 443
              E++SL+  +   +    
Sbjct: 622 KDSEEVSLDVFVKSITEDIR 641


>gi|255320540|ref|ZP_05361720.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262379097|ref|ZP_06072253.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255302390|gb|EET81627.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298554|gb|EEY86467.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 571

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E  +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGALETFMPVTQPASLWEESGRYVQYGPELLRFNDRHTNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDQASLQETYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCRIFSRLGLDFRPVQADTGSIGGSGSHEFHVLASSGEDDIAFS 224



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A +    D+ N    D  P+ K      RGIEVGHIF  G KYS  +     G 
Sbjct: 376 VNWERDASFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RV+A+ IE ++D KGIIWP ++APF+++++ + AH      +A
Sbjct: 436 DGKPLTVTMGCYGIGVTRVIASAIEQNYDEKGIIWPAAIAPFEVAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +Y  L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R   
Sbjct: 496 AEALYIELQAQGFDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRTDI 555

Query: 425 IREDMSLEEVINYASH 440
              +++ +E++   + 
Sbjct: 556 ESVNINKDELLAKLAK 571


>gi|89093619|ref|ZP_01166566.1| prolyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89082015|gb|EAR61240.1| prolyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 574

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  ++E P DAE+ SH+LMLR G+I + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRTSQYLISTVKETPSDAEVISHQLMLRAGLIRKVASGLYNWLPLGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDKSGAMEVLMPAVQPAELWEESGRWEQYGPELLRVNDRHNREFCVGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +  +  + +Y+ M  +
Sbjct: 121 EIKSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHVGQDSLQETYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S       
Sbjct: 181 YTNIFTRLGLDFRPVLADTGSIGGATSHEFHVLADSGEDDIAFSNVSDYAA 231



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 107/208 (51%), Gaps = 5/208 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P  +      RGIEVGHIF  G KYS  +
Sbjct: 366 DGKHFFGINWERDVALPEVADIRNVVEGDPSPCGEGTLEIKRGIEVGHIFQLGQKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
            A     +GK   + MG YGIG  RV+AA IE +HD  GIIWP+++APF I+LI ++   
Sbjct: 426 KAEVLDQNGKSVVMNMGCYGIGVTRVIAAAIEQNHDDGGIIWPEAIAPFHIALIPLQYDK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               ++  +++Y  L + G DV  DD  ++   G +FA  DL+G P +V++  +      
Sbjct: 486 SAEVKELTDRLYQELQQAGYDVIVDDRDKKTSPGVKFADMDLMGIPHRVVISPRGNEAGT 545

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           +E K R    ++D+ ++EV+   + R +
Sbjct: 546 LEYKGRRDDEKQDVQIDEVLPLLAERIN 573


>gi|322437350|ref|YP_004219562.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321165077|gb|ADW70782.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 687

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 161/446 (36%), Gaps = 37/446 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F  + +   RD  +   +L L +  I + +  G+  W P G      +   +RE+  + G
Sbjct: 276 FKRLEEIKARDHRVLGKQLDLFS--IQEVAGAGLIFWHPKGGLIRKAMEDWMREDCIKRG 333

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG  ++YG+ M    + +D      P +      I+++  KSY
Sbjct: 334 YEMVFTPHIMRRELWKISGHEENYGENMYPPMELDDAEYRLKPMNCPGHILIYKNSPKSY 393

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++   +R E      G++R R F   DA+ F  TP   +            +
Sbjct: 394 RDLPVRYAELGNVYRYERSGTMHGLLRVRGFTQDDAHIF-CTPGQIEDEVTACIEFAESV 452

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +  G     +   +               D  + +   S +     + S     +    
Sbjct: 453 LNTFGFHEFKVELST--------------WDPNDKKFIGSAEQWGVAVGSLRNALERKGI 498

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y       + KL D L    ++S    +    +    ++       +KG
Sbjct: 499 PYKTIPGEAAFYGPKI---DIKLVDVLGRMWQLSTVQFD----WNLPARF----DLHYKG 547

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +     G++     V+   + G    W   +AP ++ L+ I    +   +
Sbjct: 548 EDGELHQPVMVHRALFGSVERFFGVLIEHYAGAFPFW---LAPVQVGLVPI---SEKHLE 601

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  RL   G  V  D+  E++ ++     +   P  +I+G K     +V ++ R  
Sbjct: 602 YARTVQQRLKDAGVRVELDERNEKMNAKIREFGVNKVPFILIMGDKESQSDEVSVRTRGK 661

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
           G    MS E  +        ++   L
Sbjct: 662 GDGGAMSTEAFVARCLELQKSHSAEL 687


>gi|260170790|ref|ZP_05757202.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315919124|ref|ZP_07915364.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313692999|gb|EFS29834.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 646

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 159/459 (34%), Gaps = 62/459 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y + + +   RD      +  ++  M  +   KG+  WLP G      +   +R  Q
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKE--MQLFMFSETVGKGLPMWLPKGTALRLRLQEFLRRIQ 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFR 119
            R    E+  P + +  L+V SG Y  YGK+  +        +     P +     +I++
Sbjct: 286 TRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYK 345

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SY++LP    +     R E      G+ R R F   DA+ F   PE  K  + ++ 
Sbjct: 346 NFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPEQVKDEFLRVM 404

Query: 179 VSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +F  +  ++   +            IG D + E        E  +  +      P
Sbjct: 405 DIISIVFRSMDFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACAEKGLP 458

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                            E    +    K        +G  +  G
Sbjct: 459 AK------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLG 488

Query: 292 T---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + 
Sbjct: 489 TIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LT 545

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ ++ I    +   +  E++   L         DD  E+IG +    ++   P  +I
Sbjct: 546 PEQVVILPI---SEKFNEYAEQVKMYLKIHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLI 602

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VG K   + +V ++ +  G +  M  EE     +    N
Sbjct: 603 VGEKEAENGEVSVRRQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|209549439|ref|YP_002281356.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065117|sp|B5ZQK2|SYT_RHILW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209535195|gb|ACI55130.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 668

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 153/451 (33%), Gaps = 54/451 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + + +R     
Sbjct: 234 YLHML----AEAEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWRIFQALVSYMRRRL-A 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
               E++ P +    LW  SG +  Y + M  +            + +++     P +  
Sbjct: 289 VDYEEVNAPQVLDTALWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F  T E   
Sbjct: 349 GHVQIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMA 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               K+    L ++   G K I ++  + P     S      A+   T V  +       
Sbjct: 408 AECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKT------- 460

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                    +  S   I         A      E         K    R  + G      
Sbjct: 461 --------IEAQSEGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---Q 503

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +  ++  K   V +     G+M     ++  +  G   +W   V+P +
Sbjct: 504 VDFNLPERFGAFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHLPLW---VSPLQ 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +          ++   L + G +V  D   E+I  +     +   P+ ++ G 
Sbjct: 561 VVVATITS---EADAYGLEVAEALREAGLNVETDFRNEKINYKVREHSVTKVPVIIVCGR 617

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           K   +  V I+   +  +  M L+  ++  +
Sbjct: 618 KEAEERTVNIRRLGSQDQVSMGLDAAVDSLA 648


>gi|254511025|ref|ZP_05123092.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221534736|gb|EEE37724.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 652

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 153/445 (34%), Gaps = 49/445 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G K    +   +R  Q
Sbjct: 238 KAHLHMLEE----AAKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWKIYTTLQDYMRRMQ 293

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
           +R G +E++ P +    LW  SG +D Y + M  +    + A         P +      
Sbjct: 294 DRDGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEEHAREKAINALKPMNCPCHVQ 353

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   D + F  + +  +    
Sbjct: 354 VFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIF-CSEDQIESETA 412

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K      +++  LG     ++  + P     S E   + +        +  +    +  E
Sbjct: 413 KFIAFLSKVYADLGFHDWTIKLSTRPEKRIGSDESWDIVEKALGDACKAAGYDYEVLEGE 472

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++  + +     ++            
Sbjct: 473 GAFYGPKLEFTLT--------------------DAIGRDWQCGTLQVDPNLPERL----- 507

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A F GADG K     +    +G+      ++   H GK   W   +AP ++ + +I
Sbjct: 508 ---DANFIGADGAKHRPFMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASI 561

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++   L   G     D   E+I  +     +   P+ + VG + V + 
Sbjct: 562 TS---EADDYVMEVVDTLKAAGIRAEADIRNEKINYKVREHSVSKVPVILAVGHREVEER 618

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
            V I+       +  SLE V N  S
Sbjct: 619 TVTIRRLGEKQTQVQSLETVTNELS 643


>gi|188581528|ref|YP_001924973.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|179345026|gb|ACB80438.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 675

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 145/447 (32%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +        +   G+  W   G      + A +R     
Sbjct: 232 YLHRLEE----AERRDHRRLGKEMDLFHFQEEGPGVVFWHAKGWTIFQELIAYMRRRLKG 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M           + +     P +      IF
Sbjct: 288 -DYAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +       K+
Sbjct: 347 KHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEDQLAAECLKI 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     S      A+   T+V                
Sbjct: 406 NDLILSTYADFGFDQILVKLSTRPEKRVGSDALWDHAEAVMTRVL--------------- 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E +       +    R  + G        ++LP
Sbjct: 451 AQIEEQSGGRIKTAVNPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLP 501

Query: 298 --MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A++  AD +     M      G+M     ++     G   +W   +AP ++ +  I
Sbjct: 502 ERFDASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLW---LAPVQVVVATI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++   L + G  V  D   E+I  +     L   P+ + +G +   + 
Sbjct: 559 TSD---ADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEER 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++   +     ++L+  +      
Sbjct: 616 TVSVRRLGSQKTTTLTLDAAVAAFIEE 642


>gi|304413226|ref|ZP_07394699.1| Prolyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304284069|gb|EFL92462.1| Prolyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 597

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE  SHKLMLR GMI Q + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLATQKEIPADAESISHKLMLRAGMIQQVTSGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR+D YG E+LR  DR+++  + GPTHEEV+T + R+
Sbjct: 61  MNNAGAIEVSMPMVQPADLWQESGRWDKYGLELLRFVDRHERHFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   +QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M  +
Sbjct: 121 QIKSYKQLPLNLFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQKTYDTMHAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    ++A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSKIFSRIGLDFRAVQADTGSIGGSRSHEFQVLADSGEDDIVFS 224



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/209 (32%), Positives = 117/209 (55%), Gaps = 3/209 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N  + D+ P+ +      RGIEVGHIF  GT+YS  M
Sbjct: 371 DGKHYFGINWERDLPLPQVADIRNVVVGDASPDGQGTLLLKRGIEVGHIFQLGTQYSKIM 430

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT +  +GK   + MG YGIG  R+VAA IE ++D  GI+WP+++APF+++++ +  H 
Sbjct: 431 NATIENKEGKKQAITMGCYGIGVSRIVAAAIEQNYDEDGILWPEAIAPFQVAILPMNMHK 490

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E +Y  LS  G +V  DD  E+ G  F   +L+G P  +++  +   + +VE
Sbjct: 491 SFRVQEQAEALYKALSDHGVEVILDDRCERPGVMFTDMELIGVPNSIVISERNHDNQEVE 550

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
            K+R +G  + +  +++I++   + + +R
Sbjct: 551 YKNRRSGETQMIKSDKIIDFLIAQITKHR 579


>gi|332289599|ref|YP_004420451.1| prolyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330432495|gb|AEC17554.1| prolyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 568

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPTDAEVVSHQLMLRAGMIRKLAAGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q ADLW ES R++ YG E+LR  DR D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVVMPVVQPADLWQESQRWEQYGPELLRFTDRGDRPFVLGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKD YSF L  E  + +Y+ M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDGYSFHLDKESLQQTYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL   P++A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YCNIFNRLGLDFRPVQADNGSIGGSGSHEFQVLADSGEDDIVFS 224



 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P  K      RGIEVGHIF  G KYS  M
Sbjct: 363 DGKHYFGINWERDLPTPQIADIRNVVEGDPSPCGKGTLLIKRGIEVGHIFQLGKKYSEAM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            AT +G DGK   + MG YGIG  RVVAA IE SHD +GIIW D++APF+++++ +  H 
Sbjct: 423 KATVQGEDGKPQTMMMGCYGIGITRVVAAAIEQSHDERGIIWSDALAPFQVAIVPMNMHK 482

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   E++Y  L   G +V +DD  E+ G  FA  +L+G P  +I+G K +   ++E
Sbjct: 483 SAAVQQYAEELYQTLLAQGIEVLFDDRKERPGVMFADMELIGIPHMIIIGEKNLEKGEIE 542

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R +G ++ +  ++++ + + +  
Sbjct: 543 YKSRRSGEKQMVDKQQLVKFITEKLK 568


>gi|227114059|ref|ZP_03827715.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 572

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVFS 224



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  G+KYS  +
Sbjct: 366 DGKHYFGINWERDVTLPQVADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H 
Sbjct: 426 KATVQGEDGRNQTLTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SFRVKEVAEDIYQQLRAKGIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R  G ++ +   E+I++     
Sbjct: 546 YKNRRVGEKQMIKTSEIIDFLLANI 570


>gi|218438366|ref|YP_002376695.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|218171094|gb|ACK69827.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 608

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 171/455 (37%), Gaps = 54/455 (11%)

Query: 8   LPILQENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   +    +A    H+ + R  G+         G+  W P G      +   +++EQ +
Sbjct: 188 LAEYKRRKEEALKRDHRRLGRELGLFIFSDAVGPGLPLWTPKGAIIRSTLEDFLKKEQIK 247

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDI 117
            G + +  P +   DL+  SG + +Y ++M  +   + ++       +  P +      I
Sbjct: 248 RGYLPVVTPHIARIDLFKISGHWQNYKEDMFPMMAEDQESALNEMGFVLKPMNCPFHIQI 307

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++S ++SYR+LP    +    +R E     G + R R F + D++ F +TPE  +  +  
Sbjct: 308 YKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLEEEFLS 366

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS---HEFIVLADTGETQVFCSKDFMDFPIP 233
           +    L +F+ L LK+   R        D      +    A+          +   F  P
Sbjct: 367 VVDLILSVFNSLQLKNFKARLSFRDPASDKYIGGDDVWNKAENAIRSAVQKLNMEHFEAP 426

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            E   +   +                               K    R  ++G +      
Sbjct: 427 GEAAFYGPKLDF---------------------------IFKDALEREWQLGTV---QVD 456

Query: 294 YSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           Y+LP      +   DG +   V +     G++  +  ++   + G   +W   +AP ++ 
Sbjct: 457 YNLPERFDLEYVAEDGTRKRPVMIHRAPFGSLERLVGILIEEYAGDFPLW---LAPIQVR 513

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           L+ +        D  +++ A++   G     D  GE++G     A+    P+  +VG+K 
Sbjct: 514 LLPV---SDPQLDYAKQVAAQMRSQGIRAEADTSGERLGKMIRNAEKQKIPVMGVVGAKE 570

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + + I+ R +G    M++ EVI   +   +N 
Sbjct: 571 VESNTLSIRTRASGELGTMAVNEVIEKVTEAIANY 605


>gi|145630468|ref|ZP_01786248.1| frataxin-like protein [Haemophilus influenzae R3021]
 gi|144983858|gb|EDJ91300.1| frataxin-like protein [Haemophilus influenzae R3021]
          Length = 572

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|169828188|ref|YP_001698346.1| threonyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168992676|gb|ACA40216.1| Threonyl-tRNA synthetase 2 [Lysinibacillus sphaericus C3-41]
          Length = 637

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 161/445 (36%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KYF+ + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q 
Sbjct: 230 LQKYFVFLEEAEKRNHRKLGKELSLF--MFSEEAPGMPFYLANGQILRNELESYLRNLQA 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P + +  LW +SG +D Y   M      ++++    P +      IF++++
Sbjct: 288 KYDYQEVRTPLMMNQRLWEQSGHWDHYKDNMY-FTQVDNQSFALKPMNCPGHMLIFKNNL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F  TP+  +          
Sbjct: 347 HSYRDLPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-ATPQQIEDEIALALNII 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P                           D    +      +
Sbjct: 406 DEVYDVFGFQY-TVELSTRP-----------------DDYMGELALWDQAEEALENVLLN 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +I E   A Y    D+H +   D++  + + +   ++    F    K+      T
Sbjct: 448 LGIDYTINEGDGAFYGPKIDIHIK---DAIQRSHQCATVQLD----FQLPEKF----DLT 496

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +     +    + +     G++     ++     G   IW   +AP ++ +I +      
Sbjct: 497 YINEHNEKVRPIVIHRAVFGSIDRFLGILIEHFGGAFPIW---LAPQQVQVIAVA---DA 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +D   ++   L      V  DD  E++G +   A L   P  +++G +  ++  V ++ 
Sbjct: 551 HQDYAIQVVKALQHEQIRVQIDDRQEKLGKKIREAQLHKIPYIIVIGDRETANQNVSVRR 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                  + ++ +++   +      
Sbjct: 611 HGQQASVEYTVSQLMKEITEAIKQK 635


>gi|28378228|ref|NP_785120.1| threonine--tRNA ligase 1 [Lactobacillus plantarum WCFS1]
 gi|38258333|sp|Q88WU9|SYT_LACPL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28271063|emb|CAD63968.1| threonine--tRNA ligase 1 [Lactobacillus plantarum WCFS1]
          Length = 654

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 243 EARERDHRVIGNELDLF--FVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVY 300

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D++ +SG +D Y ++M    D  D   +   P +      I+  HI+SYR LP
Sbjct: 301 TPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELP 360

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 361 LRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVA-LDQIEEEFKKILSLMVEVYEDF 419

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + +   D M            D + L+  
Sbjct: 420 DISDYRFRLSYR--------------DPENKEKYFDDDAMWERSQKMLKSAMDDMGLD-- 463

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + GADG+
Sbjct: 464 YFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLD----FLLPERF----DLKYVGADGE 515

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G+ + M    A +   + G    W   +AP ++++I +           E 
Sbjct: 516 EHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPKQVTIIPVNNG--AHGAYAET 570

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V ++       E
Sbjct: 571 VRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTE 630

Query: 428 DMSLEEVINYASHRFSNN 445
             +++  I   +    + 
Sbjct: 631 SEAVDMFIGAITQEIKHY 648


>gi|293372832|ref|ZP_06619210.1| threonine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|298480838|ref|ZP_06999033.1| threonine--tRNA ligase [Bacteroides sp. D22]
 gi|292632207|gb|EFF50807.1| threonine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|295085227|emb|CBK66750.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Bacteroides
           xylanisolvens XB1A]
 gi|298272861|gb|EFI14427.1| threonine--tRNA ligase [Bacteroides sp. D22]
          Length = 646

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 159/459 (34%), Gaps = 62/459 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y + + +   RD      +  ++  M  +   KG+  WLP G      +   +R  Q
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKE--MQLFMFSETVGKGLPMWLPKGTALRLRLQEFLRRIQ 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFR 119
            R    E+  P + +  L+V SG Y  YGK+  +        +     P +     +I++
Sbjct: 286 TRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYK 345

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SY++LP    +     R E      G+ R R F   DA+ F   PE  K  + ++ 
Sbjct: 346 NFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPEQVKDEFLRVM 404

Query: 179 VSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +F  +  ++   +            IG D + E        E  +  +      P
Sbjct: 405 DIISIVFRSMDFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACAEKGLP 458

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                            E    +    K        +G  +  G
Sbjct: 459 AK------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLG 488

Query: 292 T---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + 
Sbjct: 489 TIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LT 545

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ ++ I    +   +  E++   L         DD  E+IG +    ++   P  +I
Sbjct: 546 PEQVVILPI---SEKFNEYAEQVKMYLKIHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLI 602

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VG K   + +V ++ +  G +  M  EE     +    N
Sbjct: 603 VGEKEAENGEVSVRRQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|163750377|ref|ZP_02157617.1| prolyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161329867|gb|EDQ00853.1| prolyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 569

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GM+ +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVVSHQLMLRAGMVRRNASGLYSWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWIETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y+ MF +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQESMDVTYDTMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL   P+ A++G IGG +SHEF VLAD+GE  +  S
Sbjct: 181 YNNIFERMGLSFRPVLADTGSIGGSMSHEFHVLADSGEDLIAYS 224



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 110/204 (53%), Gaps = 3/204 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
            D      I  +   P A   D+ N    +  P  +   A  RGIEVGHIF  GT YS  
Sbjct: 364 QDDKHYFGINWERDLPQAEAFDLRNIIEGEPSPCGQGTIALLRGIEVGHIFQLGTNYSES 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M A     +GK   + MG YG+G  R+VAA IE +HD +GIIWP ++APFK+ ++ +  H
Sbjct: 424 MHANVLDKNGKSKTLLMGCYGVGVSRIVAAAIEQNHDDRGIIWPAAIAPFKVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  EK+Y  L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   
Sbjct: 484 KSHRVKDMAEKLYQDLNDAGIEVLFDDRKERPGVMFADMELVGLPHVVVIGDRNIDNGVF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
           E K+R TG + D+  ++++++   
Sbjct: 544 EYKNRRTGEKRDIPFDQLLDFLKS 567


>gi|296282100|ref|ZP_06860098.1| threonyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 669

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 81/454 (17%), Positives = 148/454 (32%), Gaps = 48/454 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +++   + +   RD      ++ L    + + + G   W P G K    + + +R + 
Sbjct: 236 QLNEHLHRLEEAAKRDHRKLGREMDLF--HLQEEAHGSVFWHPQGYKIWRQLESYMRRKM 293

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGP 108
           +  G  E+  P +  A  W +SG +  Y + M  + D              +   M   P
Sbjct: 294 DGAGYREIKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNTEDEGELVSKDADWMALKP 353

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      +F+  I SYR LP    ++    R+E      G+MR R+F   DA+ F  T 
Sbjct: 354 MNCPAHVLVFKQGITSYRELPIRLGEMGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CTE 412

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +               ++   G K   ++    P     S      A+            
Sbjct: 413 KQVVEEVRAFIELADAVYRDFGFKY-AIKLALRPEQRFGSDADWDKAEQELRDAVAEAGM 471

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           M+     E    +       +    T                          R  +VG I
Sbjct: 472 MNDEYGWEELPGEGAFYAPKLEWHLTDA----------------------IGRTWQVGTI 509

Query: 288 FYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                     + A++ G DG+ H  V +     G+      ++     GK  +W   +AP
Sbjct: 510 -QGDRVLPERLDASYIGEDGEKHRPVMLHRAIFGSYERFIGILIEHFAGKLPVW---LAP 565

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +  +  I +      D   +  A+L   G     D   E+I  +     L   P  ++V
Sbjct: 566 TQAVVATIVSD---ADDYASEALAKLRAAGIRAESDLRNEKINYKVREHSLAKVPHLLVV 622

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G +   +  V ++      +  MSL+E I     
Sbjct: 623 GKREAEEGTVAVRTLGEREQRVMSLDEAIAMLRD 656


>gi|126657277|ref|ZP_01728443.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126621548|gb|EAZ92259.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 607

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 170/448 (37%), Gaps = 51/448 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 195 EEALKRDHRRLGKELGLFI-FSDPVGPGLPLWTPKGTIIRSTLEDFLKQEQLKRGYLPVV 253

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG + +Y ++M  +   N++A       +  P +      I++S ++S
Sbjct: 254 TPHIGRVDLFKISGHWQNYKEDMFPMMAENEEAKTSEMGFVLKPMNCPFHIQIYKSELRS 313

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    +R E     G + R R F + D++ F +TP+     +  +    L 
Sbjct: 314 YRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPDQLDDEFLNVVDLILS 372

Query: 184 IFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +F  L LK+   R        D    S+E    A+    +   + D   F    E   + 
Sbjct: 373 VFRSLQLKNFKARLSFRDPNSDKYIGSNEAWNKAENAIRRAVQTLDMNYFEAEGEAAFYG 432

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               +    R  ++G +      Y+LP   
Sbjct: 433 PKLDF---------------------------IFQDALEREWQLGTV---QVDYNLPERF 462

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G +G  H  V +     G++  +  ++   + G   +W   +AP ++ L+ +   
Sbjct: 463 ELEYVGEEGNRHRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPIQVRLLPV--- 516

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             V  D  + I  ++  +G     D  GE++G      +    P+  IVG+K V  + + 
Sbjct: 517 SDVQLDYVKDIANKMLSLGIRAEADTSGERLGKMIRNGEKQKIPVMAIVGAKEVEANALS 576

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R +G    M+++EVI       +N+
Sbjct: 577 IRTRASGELGTMAVDEVIEKLRDTITNH 604


>gi|311747151|ref|ZP_07720936.1| threonine--tRNA ligase [Algoriphagus sp. PR1]
 gi|126578860|gb|EAZ83024.1| threonine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 649

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 171/451 (37%), Gaps = 41/451 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +++E   RD      +L L T    +   G+  WLP G    + +   +++ 
Sbjct: 229 KELKEYLEMIEEAKKRDHRKLGRELELFT-FSEKVGMGLPLWLPKGTLLRERLVNFLKKA 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIF 118
           Q++ G  ++  P +    L+  SG Y+ YGK+  +        +  +  P +     +I+
Sbjct: 288 QDKAGYQQVITPHIGHKVLYETSGHYEKYGKDSFQPITTPHEGEEFLLKPMNCPHHCEIY 347

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SY+ LP  + +    +R E      G+ R R F   DA+ F   P+  K  + K+
Sbjct: 348 KHKPHSYKELPIRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFIKV 406

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +F  LG      +                  D    + +   D       S   
Sbjct: 407 IDLVLYVFKALGFDDFTAQISLR--------------DPENPEKYIGGDEAWDKAESAII 452

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +      L+++ E   A +                  K    R  ++G I      Y LP
Sbjct: 453 EAAAEKGLDTVTELGEAAFYGPKLDF---------MVKDALGRKWQLGTI---QVDYQLP 500

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G+D + H  V +     G++    AV+     G   +W   ++P +I+++ I
Sbjct: 501 ERFQLEYIGSDNQKHRPVMIHRAPFGSLERFVAVLIEHCAGNFPLW---LSPEQINILPI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  E+I   L + G     D+  E+IG +   +++   P  +IVG K   + 
Sbjct: 558 ---SEKFVDYAEEIKGILDEAGISGSIDNRDEKIGRKIRDSEVKKVPFMLIVGEKEKEER 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           K+ ++    G   + S EE INY     S +
Sbjct: 615 KLSVRKHGQGDLGNFSPEEFINYFEGIISES 645


>gi|254556435|ref|YP_003062852.1| threonine-tRNA ligase 1 [Lactobacillus plantarum JDM1]
 gi|308180379|ref|YP_003924507.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254045362|gb|ACT62155.1| threonine-tRNA ligase 1 [Lactobacillus plantarum JDM1]
 gi|308045870|gb|ADN98413.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 654

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 243 EARERDHRVIGNELDLF--FVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVY 300

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D++ +SG +D Y ++M    D  D   +   P +      I+  HI+SYR LP
Sbjct: 301 TPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELP 360

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 361 LRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVA-LDQIEEEFKKILSLMVEVYEDF 419

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + +   D M            D + L+  
Sbjct: 420 DISDYRFRLSYR--------------DPENKEKYFDDDAMWERSQKMLKSAMDDMGLD-- 463

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + GADG+
Sbjct: 464 YFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLD----FLLPERF----DLKYVGADGE 515

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G+ + M    A +   + G    W   +AP ++++I +           E 
Sbjct: 516 EHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPKQVTIIPVNNG--AHGAYAET 570

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V ++       E
Sbjct: 571 VRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTE 630

Query: 428 DMSLEEVINYASHRFSNN 445
             +++  I   +    + 
Sbjct: 631 SEAVDMFIGAITQEIKHY 648


>gi|299065636|emb|CBJ36808.1| Proline--tRNA ligase [Ralstonia solanacearum CMR15]
          Length = 574

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D  G EM+R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNASGAVEVLMPVVQPAELWQETGRWDKMGDEMMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYEKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +  S
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYS 224



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 109/200 (54%), Gaps = 7/200 (3%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEV 284
             DF + +   DF        +      P A   D+ N    D  P+ K      RGIEV
Sbjct: 358 MSDFVVGANEEDFH----YTGVNWGRDLPEAEVYDLRNVVAGDPSPDGKGTLALCRGIEV 413

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GT+YS  MSATF   +GK   + MG YGIG  R++ A IE ++D +GIIWP S+
Sbjct: 414 GHVFMLGTRYSESMSATFLDENGKTQPMMMGCYGIGITRILGAAIEQNYDARGIIWPVSI 473

Query: 345 APFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF++ +  +     +  R   ++++A L+  G DV  DD GE+ G+ FA  +L+G P +
Sbjct: 474 APFEVVICPVGYDRSEAVRAEADRLHAELAAAGIDVILDDRGERPGAMFADWELIGVPFR 533

Query: 404 VIVGSKFVSDSKVEIKHRLT 423
           V+VG + + + K+E++ R  
Sbjct: 534 VVVGERGLKEGKLELQGRRD 553


>gi|289550561|ref|YP_003471465.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315658055|ref|ZP_07910928.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|289180093|gb|ADC87338.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315496945|gb|EFU85267.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 645

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 165/446 (36%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQLLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +  Y  +M        ++ M+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYRTSGHWAHYRDDMFPPMKLDENEEMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRLAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKDEFKRVVHMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +    R                  D  + + +   D M     S   +  D
Sbjct: 407 QDVYKDFGFEDYTFRLSYR--------------DPEDKEKYMDDDDMWNKAESMLKEAVD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L  +     A  A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 ELGLPYVEAIGEA--AFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+DG+ H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGSDGEYHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPKQVEIIPVNV--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++ 
Sbjct: 558 HYDYARNLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQ 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  ++ +  +E I          +
Sbjct: 618 YGSQDQQTLERDEFIWNLVDEIRLKK 643


>gi|77457424|ref|YP_346929.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|114152233|sp|Q3KH16|SYP_PSEPF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77381427|gb|ABA72940.1| proline tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 571

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 112/225 (49%), Positives = 158/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+ +P+ Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRIKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD+YSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDSYSFHADQASLQVTYDRMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   ++MG YGIG  RVVAA IE ++D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCEVLGENGKPVTLEMGCYGIGVSRVVAAAIEQNNDENGIIWSDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           ++ R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 ELVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R  G  + + + +V+++   R  
Sbjct: 544 EYKSRTEGQAQALPVADVLSFLQARIR 570


>gi|312384017|gb|EFR28854.1| hypothetical protein AND_02684 [Anopheles darlingi]
          Length = 766

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 160/445 (35%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +  I +E    A    H+ + R       H+ S G   + P G    + +   IR
Sbjct: 259 KQLKEWERIQEE----AAKRDHRKLGREQELFFFHELSPGSCFFQPKGAFIYNTLMNFIR 314

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P + +A LW  SG +  Y + M        +     P +      IF
Sbjct: 315 AEYRKRGFQEVISPNIYNAKLWQTSGHWQHYAENMFSFESEK-ETFALKPMNCPGHCLIF 373

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +S+R LP       +  R+EL     G+ R R F   DA+ F + P+  +      
Sbjct: 374 DHRNRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCM-PDQIREEITGC 432

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     +   + P       E    A+    +            P +  
Sbjct: 433 LDFLRHVYTVFGFTFNLV-LSTRPEKYLGEIEVWNEAEKALAESLDKFGEPWKENPGDG- 490

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L  + + +   ++    F    +++L 
Sbjct: 491 -------------------AFYGPKIDITIMDALKRHHQCATIQLD----FQLPIRFNLN 527

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                  +  K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +   
Sbjct: 528 Y---VDDSGEKKRPVIIHRAVLGSVERMIAILTENYAGK---WPFWLSPRQVMVVPVGP- 580

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +  +K+  RL   G  V  D D G+ +  +   A L  F   ++VG K  S   V
Sbjct: 581 --AYDEYADKVRLRLHDAGFTVEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETV 638

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++ R   +  +++++E++   +  
Sbjct: 639 NVRTRDNKVHGEVTVDELVTKLAKL 663


>gi|300767159|ref|ZP_07077071.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300494978|gb|EFK30134.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 688

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 277 EARERDHRVIGNELDLF--FVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVY 334

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D++ +SG +D Y ++M    D  D   +   P +      I+  HI+SYR LP
Sbjct: 335 TPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELP 394

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 395 LRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVA-LDQIEEEFKKILSLMVEVYEDF 453

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + +   D M            D + L+  
Sbjct: 454 DISDYRFRLSYR--------------DPENKEKYFDDDAMWERSQKMLKSAMDDMGLD-- 497

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + GADG+
Sbjct: 498 YFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLD----FLLPERF----DLKYVGADGE 549

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G+ + M    A +   + G    W   +AP ++++I +           E 
Sbjct: 550 EHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPKQVTIIPVNNGAHGA--YAET 604

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V ++       E
Sbjct: 605 VRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTE 664

Query: 428 DMSLEEVINYASHRFSNN 445
             +++  I   +    + 
Sbjct: 665 SEAVDMFIGAITQEIKHY 682


>gi|91793895|ref|YP_563546.1| prolyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123060765|sp|Q12L53|SYP_SHEDO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91715897|gb|ABE55823.1| prolyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 571

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPLVQPADLWIETGRWEKFGPELLRFQDRHNRDFVLGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L       +Y  MF +
Sbjct: 121 EVSSYKQLPLSLYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHLDQGTMDETYQAMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R+GL   P+ A++G IGG LSHEF VLA++GE  +  S
Sbjct: 181 YNNIFTRMGLAFRPVLADTGSIGGSLSHEFHVLANSGEDLIAYS 224



 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
            D      I  +   P A  +D+ N    ++ P+       ARGIEVGHIF  GT YS  
Sbjct: 364 QDDKHFIGINWERDLPLATAADIRNVVEGEATPDGLGTYAMARGIEVGHIFQLGTNYSKA 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT    +GK   + MG YG+G  R+VAA IE +HD +GI+ P+++APF + ++ +  H
Sbjct: 424 MNATVLDENGKSQVMLMGCYGVGVSRIVAAAIEQNHDDRGIMLPEALAPFTVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  EK+Y  L+  G +V  DD  E+ G  FA  +L+G P  V++G + +     
Sbjct: 484 KSHRVADIAEKLYQDLNDAGIEVLLDDRKERPGVMFADMELIGLPHVVVIGDRNIDAGVF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++D+ L++++++      
Sbjct: 544 EYKNRRTGEKQDIPLDQIVDFLKSSLK 570


>gi|329298700|ref|ZP_08256036.1| prolyl-tRNA synthetase [Plautia stali symbiont]
          Length = 572

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGIRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWEESGRWEQYGPELLRIKDRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNVYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V  S +     
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSGSHEFQVLAQSGEDDVIFSSESDYAA 231



 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I      P     D+ N    D  P+ K +    RGIEVGHIF  GTKYS  M
Sbjct: 366 DGQHYAGINWGRDLPETRVEDIRNVVEGDPSPDGKGMLMIKRGIEVGHIFQLGTKYSDAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A  +G DG++  + MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +  H 
Sbjct: 426 KAAVQGEDGRNQIMTMGCYGIGITRVVAAAIEQNHDERGIIWPAALAPFEVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SFRVKELAEQLYNELRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R    ++ +   +++++ S   + 
Sbjct: 546 YKARAASEKQMIKQHDIVDFLSRALNK 572


>gi|239947855|ref|ZP_04699608.1| threonyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|241116864|ref|XP_002401645.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215493189|gb|EEC02830.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|239922131|gb|EER22155.1| threonyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 635

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 157/442 (35%), Gaps = 49/442 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R        + ++G+  W   G    + +   IR++  +
Sbjct: 231 YLFMLEE----AEKRDHRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNIIEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G IE+  P L    LW  SG +  +  +M  L + +DK +   P +      IF+  IK
Sbjct: 287 NGYIEVKTPVLVDKSLWEASGHWKKFRDDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F    E              
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-EEQITDETVSFCKLLT 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++    P     S E    A+    +      F     P E   +   
Sbjct: 405 EVYKDFGFNDIKVKFSDRPEIRAGSDEVWDKAENALKEAVEKAGFTYTLNPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                                    R  + G        + LP  + A
Sbjct: 465 LEFVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++  A G K   V +    +G++     ++   + G+  +W   + P ++++  I +   
Sbjct: 495 SYIAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---ITPIQVAVATITSD-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     +   ++I  +         P+  ++G +   + +V I+
Sbjct: 550 -LNDYALEVQKALIDNGVRTDINISPDKINYKIREFSNQKIPMIAVIGKQEKENKQVTIR 608

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              T  +E +S+E++I      
Sbjct: 609 RLGTTEQEVLSIEQLIALVKEE 630


>gi|270157462|ref|ZP_06186119.1| prolyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164147|ref|YP_003454285.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella longbeachae NSW150]
 gi|269989487|gb|EEZ95741.1| prolyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288857320|emb|CBJ11147.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella longbeachae NSW150]
          Length = 569

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LM+RTGMI +   G+Y+W+PLG K L  +  I+REE
Sbjct: 1   MRASQWFLATLKETPNDAEIVSHQLMVRTGMIRKLGSGLYTWMPLGLKVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   ++E+ +P +Q A+LW E+GR+D++G ++L + D ND+   +GPTHEEV+TDI R 
Sbjct: 61  MNNINSMEVLMPAVQPAELWQETGRWDTFGGQLLTMKDSNDREYCFGPTHEEVITDIMRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP +FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPASFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLNLESLQDTYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +F S       
Sbjct: 181 YCRIFDRLGLKYRAVEADTGAIGGSASHEFQVLADSGEDLIFYSDQGDYAA 231



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSAT 301
                            D+ N K  D  P+ K    S RGIEVGH+F  G KY+  M+A 
Sbjct: 365 HYQHAAWDKDVKEYLAFDLRNVKDGDISPDGKGTLYSCRGIEVGHVFQLGDKYAKAMNAV 424

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQV 360
                G+   + MG YG+G  RVVAA IE  HD KGIIWP ++APF++ +I + AH    
Sbjct: 425 VINEQGQLETMLMGCYGLGITRVVAAAIEQHHDEKGIIWPQNIAPFQLVIIPLNAHRSPE 484

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   +++Y +   +  DV  DD  E+ G  FA  DL+G P +++V  + +  + VE K 
Sbjct: 485 VKKQADRLYEQFKNLSIDVLIDDRNERAGVLFADHDLIGIPHRLVVSDRNIEQNCVEYKS 544

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  +  +L+  ++      S +
Sbjct: 545 RATGEMQQFNLDTAVDSVLKLISKS 569


>gi|67459371|ref|YP_246995.1| threonyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|73919821|sp|Q4UKU3|SYT_RICFE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67004904|gb|AAY61830.1| Threonyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 635

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 158/442 (35%), Gaps = 49/442 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R        + ++G+  W   G    + +   IR++  +
Sbjct: 231 YLFMLEE----AEKRDHRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ + ++M  L + +DK +   P +      IF+  IK
Sbjct: 287 NGYTEVKTPVLVDKSLWEASGHWEKFREDMFAL-ETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F    E              
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-EEQITDETVSFCKLLT 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++    P     S E    A+    +      F     P E   +   
Sbjct: 405 EVYKDFGFTDIKVKFSDRPEIRAGSDEVWDKAENALKEAVEKAGFTYTLNPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                                    R  + G        + LP  + A
Sbjct: 465 LEFVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++  A G K   V +    +G++     ++   + G+  IW   +AP ++++  I +   
Sbjct: 495 SYIAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPIW---LAPIQVAIATITSD-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     +   ++I  +         P+  ++G +   +  V I+
Sbjct: 550 -LNDYALEVQKALIDNGVRTDINISPDKINYKIREFSNQKIPMIAVIGKQEKENKHVTIR 608

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              T  +E +S+E++I      
Sbjct: 609 RLGTTDQEVLSIEQLIALIKKE 630


>gi|1565235|emb|CAB02510.1| Threonyl tRNA Synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 601

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 157/441 (35%), Gaps = 42/441 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 198 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 255

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 256 DEVRTPFMMNQRLWEQSGHWDHYRDNMY-FSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 314

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F +  +  +    +       ++
Sbjct: 315 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIF-VREDQIESEIKEAIRLIDEVY 373

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P            ++    +V             +          
Sbjct: 374 RTFGFEY-SVELSTRPEDSLGDDSLWEASERALARVLEELGLSYEINEGDG--------- 423

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                      A      +  + D+L  + + +   ++    F    K+      T+   
Sbjct: 424 -----------AFYGPKIDFHIKDALKRSHQCATIQLD----FQMPEKF----DLTYINE 464

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K   V +     G++     ++   + G   +W   +AP ++ +I +     V  D 
Sbjct: 465 LNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVW---LAPIQVQIIPV---SHVHLDY 518

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++     
Sbjct: 519 CRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGHQ 578

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E +  +   +    +  N 
Sbjct: 579 QNEHVPFQTFKDKLVKQVENR 599


>gi|299537247|ref|ZP_07050550.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727488|gb|EFI68060.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 638

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 162/441 (36%), Gaps = 41/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F+ + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q +   
Sbjct: 234 FIFLEEAEKRNHRKLGKELSLF--MFSEEAPGMPFYLANGQILRNELESYLRHLQAKYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M      +D++    P +      IF++ + SYR
Sbjct: 292 GEVRTPLMMNQRLWEQSGHWDHYKDNMY-FTQVDDQSFALKPMNCPGHMLIFKNALHSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F  TP+  +            ++
Sbjct: 351 DLPIRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIF-ATPQQIEDEIALALKIIDEVY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +  G  +  +   + P                           D    +     +++   
Sbjct: 410 NVFGF-AYTIELSTRP-----------------DDYMGDLALWDQAEAALENVLNNLGIA 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +I     A Y    D+H +   D++  + + +   ++    F    K+      T+   
Sbjct: 452 YTINAGDGAFYGPKIDIHIK---DAIQRSHQCATVQLD----FQLPEKF----DLTYINE 500

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +     G++     ++     G    W   +AP ++ +I +    +  +  
Sbjct: 501 HNERVRPVVIHRAVFGSIDRFLGILIEHFGGAFPTW---LAPQQVQVIGVA---EAHQGY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++   L +    V  DD  E++G +   A L   P  V++G + V++  V ++     
Sbjct: 555 AKQVVEALQQAEIRVQLDDRQEKLGKKIREAQLQKIPYIVVIGDREVANQTVAVRRHGQQ 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
              D SL+++I   +      
Sbjct: 615 NANDKSLQQLIEEVTAAIQQK 635


>gi|110834994|ref|YP_693853.1| threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110648105|emb|CAL17581.1| Threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 638

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 155/446 (34%), Gaps = 48/446 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +    +L  L+E    AE   H+ + +      I Q + G   W P G +   N+   IR
Sbjct: 228 KELNAYLKQLEE----AEKRDHRKLAKEMGLFHIQQEAVGSMFWHPKGWRMRKNLENYIR 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +  + G  E+S P +    LW +SG +D YG++M  +   + K M   P +      IF
Sbjct: 284 GKMEKGGYEEVSTPQMMDRILWEQSGHWDKYGEDMFTVCTHDHKEMAVKPMNCPGHVQIF 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  I SYR+LP    +    FR+E      G+MR+R F   DA+ F  T E         
Sbjct: 344 KQGITSYRDLPIRLGEFTTLFRNEAHGALHGLMRARSFSQDDAHIF-CTEEQVNEETAGF 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G  S  ++    P     S E    A+        S        P E  
Sbjct: 403 IKMLREVYADFGFDSFRIKFSDRPDNRAGSDETWDKAEGALRSAVESLGLECELNPGEGA 462

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +                               +    R  + G        + LP
Sbjct: 463 FYGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDFVLP 492

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A +   DG +   V +    +G++     ++  S  G   +W   +AP  +++  I
Sbjct: 493 DRLDAEYVAEDGSRQRPVMLHRAVLGSLERFLGILIESTAGHLPLW---LAPRPVAVCTI 549

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +    +  +L   G     D   E+IG +         P   ++G +    +
Sbjct: 550 TNS---ADEYATTVQQKLVAAGIPAELDIRNEKIGFKVREHSRAKTPRIWVIGEQEAQHN 606

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
           +V I+   +   E + L+E +   + 
Sbjct: 607 QVAIRTLGSQATETVDLDEAVAALAE 632


>gi|157964288|ref|YP_001499112.1| threonyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844064|gb|ABV84565.1| Threonyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 651

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 155/440 (35%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 247 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 304

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG +  +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 305 YTEVKTPVLVDKSLWEVSGHWAKFRDDMFVL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 363

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E               +
Sbjct: 364 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-EEQITDETVSFCKLLTEV 422

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+    +      F     P E   +   + 
Sbjct: 423 YKDFGFTDIKVKFSDRPEVRAGSDEVWDKAENALKEAVEQAGFTYTLNPGEGAFYGPKLE 482

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A++
Sbjct: 483 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDASY 512

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + G+  +W   +AP ++++  I +     
Sbjct: 513 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW---LAPVQVAIATITSD---L 566

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G    ++   ++I  +         P+  ++G +   + +V I+  
Sbjct: 567 NDYALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRL 626

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I      
Sbjct: 627 GTTDQEVLSVEQLIAVVKEE 646


>gi|149927159|ref|ZP_01915416.1| prolyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824098|gb|EDM83319.1| prolyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 586

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL  L+E P DAE+ SH+LM+R GMI + + GIY+++P+G +++  V  I+REE
Sbjct: 1   MRATQFFLNTLKEAPADAEVISHQLMMRAGMIKRLAGGIYTYMPVGLRSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEKYGPELLRMKDRHDRDYVIGPTHEEVITDVVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REF+MKDAYSFD T E +  +Y+ M+ +
Sbjct: 121 EVKSYRQLPLNLYQIQTKFRDEIRPRFGVMRGREFVMKDAYSFDRTQEAALKTYDVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    + A++G IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YRRIFTRLGLNFRAVNADTGSIGGNRSHEFHVIADTGEDAIAYC 224



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 106/211 (50%), Gaps = 4/211 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
                +      P    SD+ N    D  P+ K      RGIEVGH+FY GTKYS  + A
Sbjct: 376 YHYAGVNWGRDLPEPEVSDIRNVVEGDPSPDGKGVLAMCRGIEVGHVFYLGTKYSEALQA 435

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQ 359
            F   +GK   ++MG YGIG  R++ A IE + D +GIIWP S+APF++ L  I      
Sbjct: 436 KFLEENGKPAVIEMGCYGIGVTRILGAAIEQNFDDRGIIWPLSIAPFEVVLCPIGYKKSD 495

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +K+Y  L   G DV  DD  E+ G  FA  +L+G PL+V +G + + + KVE +
Sbjct: 496 EVKAQADKLYQMLKDAGVDVMLDDRDERPGVMFADWELIGVPLRVTLGDRGLKEGKVEFQ 555

Query: 420 HRLTG-IREDMSLEEVINYASHRFSNNRPVL 449
            R     + D+ + E+        ++ +  L
Sbjct: 556 SRDGKVEKRDVEVGEIFEQLCVELASRQVSL 586


>gi|253583464|ref|ZP_04860662.1| threonine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834036|gb|EES62599.1| threonine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 637

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 162/443 (36%), Gaps = 46/443 (10%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D      +L L    + ++  G   +LP G    + +  + R E   
Sbjct: 228 KAYLTLLEEAERRDHRKLGKELDLF--FVSEYGPGFPIFLPKGMVIRNTLIDLWRREHTL 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P + + +LW  SG + +Y + M   +  +D      P +       ++  + 
Sbjct: 286 AGYQEITTPIMLNKELWEISGHWFNYRENMYT-STIDDTEFAIKPMNCPGGILAYKYQLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++ P    ++    R E      G+MR R F   DA+ F +TP+  +     +     
Sbjct: 345 SYKDFPIRCGELGTVHRHEFSGALHGLMRVRSFTQDDAHIF-MTPDQIEEEIIGVVELID 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           + + +L      +   + P     S+E    A+                 P +   +   
Sbjct: 404 KFYSKLFGFEYHIELSTKPEKAIGSNEIWEKAEAALAGALDKIGKPYKLNPGDGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R  + G I      ++LP     
Sbjct: 464 LDFK---------------------------IKDAIGRTWQCGTI---QLDFNLPERFDI 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ G DG+ H  V +     G++     ++     G   +W   +AP ++ ++ I     
Sbjct: 494 SYIGEDGEKHRPVMIHRVVYGSIERFIGILIEHFAGAFPLW---LAPTQVKILTIN---D 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEI 418
                 ++I+  L + G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 EVVPYAKEIFKALQERGIRAEIDDRAESIGYKIREANGKYKIPVQLILGKNEVENREVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +E M L+E ++     
Sbjct: 608 RKFGSQQQESMKLDEFLDIIVDE 630


>gi|258543038|ref|YP_003188471.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634116|dbj|BAI00092.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637176|dbj|BAI03145.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640228|dbj|BAI06190.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643285|dbj|BAI09240.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646340|dbj|BAI12288.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649393|dbj|BAI15334.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652379|dbj|BAI18313.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655437|dbj|BAI21364.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 645

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 158/440 (35%), Gaps = 45/440 (10%)

Query: 8   LPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L  L+E    AE   H+ + +  G+ H  + + G   W   G +    +   +R  Q R 
Sbjct: 235 LHQLEE----AEKRDHRRIGKEMGLFHFQEEAVGQVFWHAKGWRLYTALQDYMRRAQTRH 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G  E+  P L    LW  SG +D Y   M      ++       P +      IFR  ++
Sbjct: 291 GYQEVRTPQLVDRALWEASGHWDKYRHHMFIATVEDENKTLALKPMNCPCHVQIFRHGLR 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +     R E      G+MR R F   DA+ F  T +       +      
Sbjct: 351 SYRELPLRMAEFGACHRYEPSGALHGLMRVRGFTQDDAHIF-CTEDQIADETVRFVKMLH 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG + + ++    P     S E    A+    +            P E       
Sbjct: 410 DVYQDLGFEHVRVKFADRPEQRAGSDEVWDKAENALKEACTVAGVEYEHNPGEG------ 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A         L D++  + +     +++               A++
Sbjct: 464 --------------AFYGPKLEFVLRDAIGRDWQCGTLQVDLVLPERL--------DASY 501

Query: 303 KGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D G+   V +    +G+      ++   H G+  +W   +AP ++ + +I +     
Sbjct: 502 IGEDSGRHRPVMLHRAILGSFERFLGILIEQHAGRFPLW---LAPVQVVVASIVSD---A 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++ A L + G  V  D   ++I ++     +   P+ ++VG +   +  V ++  
Sbjct: 556 APYAEEVAAALREAGLAVEADVRNDKINAKVREHSVARVPVILVVGRREAEERTVAMRRL 615

Query: 422 LTGIREDMSLEEVINYASHR 441
            T ++E +SL++ +    + 
Sbjct: 616 GTQVQETLSLDDAVARLKNE 635


>gi|329905673|ref|ZP_08274169.1| Prolyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547550|gb|EGF32358.1| Prolyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 578

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPADAEIVSHQLMMRAGMIKRLGSGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E++R+ DR+ +  I  PT EEV+TDI R+
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRWQEYGAELMRVKDRHGRDFIIQPTSEEVITDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY +Q KFRDE RPRFG+MR REF MKDAYSFD  P G K SY  MF +
Sbjct: 121 EIKSYRQLPVNFYHVQTKFRDERRPRFGLMRGREFTMKDAYSFDRDPAGMKQSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R GL   P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRFGLGFRPVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSA 279
           F      DF   +   DF        +      P   + D+ N    D+ P+ K      
Sbjct: 357 FSVAHMSDFICGANAVDFH----FTGVNWGRDLPEPVSFDLRNVVAGDASPDGKGVLAIQ 412

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GT+YS  M ATF   +GK   +QMG YGIG  R++ A IE + D KGII
Sbjct: 413 RGIEVGHVFQLGTRYSEDMKATFLDENGKPQLLQMGCYGIGVTRILGAAIEQNFDDKGII 472

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP S+APF+I L  +    ++  + A + + A L   G D   DD GE+ G+ FA  +L+
Sbjct: 473 WPVSIAPFEIVLCPMGYDRNEAVKTAADTLLADLLAAGIDAILDDRGERPGAMFADWELI 532

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P ++++G + + D K+E + R       + + + +++   R 
Sbjct: 533 GVPHRIVIGDRGLKDGKLEYQGRRETAATAVDVADAVSFVQARL 576


>gi|194333013|ref|YP_002014873.1| threonyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|238693296|sp|B4S3D2|SYT_PROA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194310831|gb|ACF45226.1| threonyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 657

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 170/458 (37%), Gaps = 52/458 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLM---LRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           S+  L     +  +A+   H+ +   L   M+  +   G+  WLP G    + + + +RE
Sbjct: 235 SEKLLKQHLAHIEEAKKRDHRKLGAELELFMLSPEVGSGLPIWLPKGAIVRNELESFLRE 294

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADR--NDKAMIYGPTHEEVM 114
           EQ + G + +  P + +  L+  SG Y  Y +         D    ++  +  P +    
Sbjct: 295 EQRKRGYVPVYTPHIGNIGLYKRSGHYPYYSESQFPPLTYTDDLGREEQYLLKPMNCPHH 354

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +   P+     
Sbjct: 355 HMIYSSKLRSYRDLPIRLTEFGTVYRHEQSGELNGLIRARGFTQDDSHIY-CRPDQLVDE 413

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                     +F  LG   I +R                L D      +     +     
Sbjct: 414 ICNAIDLTKFVFATLGFDDIQIRLS--------------LHDPENQDKYGGTKEVWEQAE 459

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT- 292
            +  +  D ++++       A +         +                 +G  +  GT 
Sbjct: 460 KDVREAADRMNIDYFTGIGEASFYGPKIDFIVRDA---------------IGRKWQLGTV 504

Query: 293 --KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              Y +P     ++ G+DG+ H  V +     G+M     V+     G   +W   +AP 
Sbjct: 505 QVDYVMPERFDLSYIGSDGQPHRPVIIHRAPFGSMERFIGVLIEHTGGNFPLW---LAPV 561

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +I+++ I        D   ++   L   G  V  D   E+IG +   +++   P  VI+G
Sbjct: 562 QIAVLPIT---DEVHDYAVQVRDTLHAAGMRVELDTRSEKIGKKIRESEVAKIPYMVIIG 618

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            K  +  +V ++    G + +M++EE+    +   ++ 
Sbjct: 619 QKEAAAGEVSLRRHREGDQGNMTVEELKEKLAKEINDK 656


>gi|77919019|ref|YP_356834.1| threonyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123770467|sp|Q3A4P3|SYT_PELCD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77545102|gb|ABA88664.1| Ser-tRNA(Thr) hydrolase [Pelobacter carbinolicus DSM 2380]
          Length = 638

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 159/448 (35%), Gaps = 50/448 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  W P G      +    R E  R G
Sbjct: 234 YLNKLEEARKRDHRRIGRELDLFS-FSEEAGAGLVIWHPKGALLRTLLEDFERREHLRRG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +D+Y + M    D + +     P +      I+++  +SY
Sbjct: 293 YDIVMGPQILRTDLWKTSGHFDNYRENMY-FTDVDGQGYGIKPMNCLAHMLIYKARQRSY 351

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+    TP+       ++      +
Sbjct: 352 RDLPLRYFELGTVHRHEKSGVLHGLLRVRGFTQDDAHII-CTPDQLDEEIKRVLEFVRDV 410

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
               G +   +   + P   IG D   E    A                          D
Sbjct: 411 MAIFGFEY-EIEISTRPEKSIGSDADWERATGA--------------------LMNALKD 449

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
           +   + + E   A Y    D+  +   D          R  +   I      ++LP    
Sbjct: 450 LELPHDVNEGDGAFYGPKIDIKLKDALD----------RRWQCATI---QCDFTLPERFD 496

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ G DG+ H  V +    +GA+     V+   + G   +W   +AP +  +IN+  + 
Sbjct: 497 LTYVGKDGEKHRPVMLHRVILGAIERFIGVLIEHYAGNFPLW---LAPVQAVVINVTDN- 552

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + +   L   G  V  D   E++G +   A +   P  ++VG   +SD  V  
Sbjct: 553 --QADYAKSVSDALRAAGVRVQCDLRNEKLGFKIREAQVDKIPYMLVVGDTEMSDGTVAP 610

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R     E MS E+   +        R
Sbjct: 611 RFRSGKNLEPMSPEDFARFVQEECDQYR 638


>gi|322419731|ref|YP_004198954.1| threonyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126118|gb|ADW13678.1| threonyl-tRNA synthetase [Geobacter sp. M18]
          Length = 636

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 153/443 (34%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R+E  + G
Sbjct: 232 YLARIEEAKKRDHRKLGKELDLFS-FNDEVGAGLVIWHPKGAMLRTILEDFERKEHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG Y++Y + M      +++     P +      I+RS ++SY
Sbjct: 291 YDIVVGPQILKTELWQRSGHYENYRENMYFTTV-DEQGYGVKPMNCLAHMMIYRSQLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 350 RDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHIL-CTPEQLDAEIKGVIQFVTEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +   M   + P     S +   LA +                  +         
Sbjct: 409 MGIFGFEF-EMELSTRPEKSIGSDDAWELATSALLNALKDSGRPFEINEGDG-------- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + KL D+L    + +    +    F    ++      T+  
Sbjct: 460 ------------AFYGPKIDIKLRDALDRRWQCATIQCD----FTLPERF----DLTYVD 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG K   V +    +GA+     V+     G    W   +AP + +++ +  +      
Sbjct: 500 ADGEKKRPVMVHRVILGAIERFIGVLIEHFAGNFPTW---LAPVQATIVTVTDN---QIP 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +  +  L   G  V  D   E++G +   A L   P  ++VG K V    +  ++R  
Sbjct: 554 YAQAAFDTLRAAGVRVQKDFRNEKLGFKIREAQLQKIPYMLVVGDKEVEGGLLAPRYRDG 613

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              + M+ E+ + +        +
Sbjct: 614 KNLDAMTPEQFVAFIEKEVKTYK 636


>gi|56965736|ref|YP_177470.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56911982|dbj|BAD66509.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 637

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 157/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           YF  + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q +  
Sbjct: 233 YFAFLEEAEKRNHRKLGKELELF--MFSEEAPGMPFYLANGQIIRNELESFLRNLQAKYD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      +++     P +      IF++ + SY
Sbjct: 291 YKEVRTPIMMNQRLWEQSGHWDHYKENMY-FTQVDEQQFALKPMNCPGHMLIFKNGLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F +TP+  +            +
Sbjct: 350 RDLPIRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIF-VTPQQIEEEITLALKIIDHV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S      A+T    V    ++       +         
Sbjct: 409 YQVFGFKY-EIELSTRPDDFMGSEHLWEQAETALENVLQKLNYAYKVNEGDG-------- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  + D++  + + +   ++    F    K+      T+  
Sbjct: 460 ------------AFYGPKIDIHIKDAIQRSHQCATVQLD----FQLPEKF----DLTYID 499

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   V +     G++     ++     G   +W   +AP ++ ++ +     V  D
Sbjct: 500 KQNEKKRPVVIHRAVFGSIDRFLGILIEHFAGAFPVW---LAPVQVQIVPV---SHVHLD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C  I + L +VG  V  D+  E++G +   A +   P  +++G   + +  V ++    
Sbjct: 554 YCLTIQSELKQVGVRVNIDESDEKLGYKIRKAQMQKIPCTIVLGDNELKEETVTVRQYGK 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E +  E        +    
Sbjct: 614 PETERVPFEYFKEKLVRQIKER 635


>gi|262371768|ref|ZP_06065047.1| prolyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262311793|gb|EEY92878.1| prolyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 571

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+YSWLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYSWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGR++ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPAALWEESGRFEQYGPELLRFKDRHTNDFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAFS 224



 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/195 (38%), Positives = 107/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A Y+   D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 376 LNWERDAKYSEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 435

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE + D KGIIWP ++APF+++++ + AH      +A
Sbjct: 436 DGKPFTVTMGCYGIGVTRVVAAAIEQNFDDKGIIWPQAIAPFEVAIVPMNAHKSPRTLEA 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 496 AEALYAELQAQGYDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDE 555

Query: 425 IREDMSLEEVINYAS 439
              ++S EE+I   +
Sbjct: 556 ESTNLSKEELIKKLA 570


>gi|212636240|ref|YP_002312765.1| prolyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|212557724|gb|ACJ30178.1| Prolyl-tRNA synthetase, bacterial [Shewanella piezotolerans WP3]
          Length = 596

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 27  MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 86

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLW E+GR+D +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 87  MNKAGSVEILMPMVQPADLWQETGRFDKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 146

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 147 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLEQECMDETYEAMFQA 206

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  RLGL   P+ A++G IGG LSHEF VLA++GE  +  S
Sbjct: 207 YNNILTRLGLSFRPVMADTGSIGGSLSHEFHVLANSGEDLIAYS 250



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
            D      I  +   P A   D+ N    ++ P  K   A  RGIEVGHIF  G+ YS  
Sbjct: 390 QDDKHYFGINWERDLPSAPAFDLRNIIEGEASPCGKGTIALLRGIEVGHIFQLGSNYSEA 449

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M A     +GK   + MG YG+G  R+VAA IE +HD +GIIWP+++APF++ ++ +  H
Sbjct: 450 MHANVLDQNGKSKTLLMGCYGVGVSRMVAAAIEQNHDDRGIIWPEAIAPFQVGILPMNMH 509

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  E++Y  L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   
Sbjct: 510 KSHRVKDMAEQLYQDLTDAGMEVLFDDRKERAGVMFADMELVGLPNVVVIGDRNIDNGVF 569

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           E K+R TG ++D+  ++++ +   +
Sbjct: 570 EYKNRRTGEKQDVPFDQIVEFLKAQ 594


>gi|167422088|ref|ZP_02313841.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|166958900|gb|EDR55921.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
          Length = 369

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 135/400 (33%), Gaps = 42/400 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
              +   +R +       E+  P +    LW ++G +++Y + M   +  N +     P 
Sbjct: 1   FRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPM 59

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           +      IF   +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E
Sbjct: 60  NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEE 118

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +   N        ++   G + I ++  + P     S E    A+             
Sbjct: 119 QVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDELWTRAEDDLAAALTENGIP 178

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
               P E   +   I                                    R  + G + 
Sbjct: 179 FDYQPGEGAFYGPKIEFTL---------------------------HDCLDRAWQCGTV- 210

Query: 289 YFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                +SLP  +SA++ G +      V +    +G+M     ++   + G    W   +A
Sbjct: 211 --QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTW---LA 265

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ ++NI        D  +++  +L   G     D   E+IG +     L   P  ++
Sbjct: 266 PVQVVVMNIT---DSQSDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLV 322

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            G K V   K+ ++ R       + +  V++       + 
Sbjct: 323 CGDKEVESGKIAVRTRRGKDLGSLDVNVVVDQLLAEIRSR 362


>gi|123965897|ref|YP_001010978.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|166225479|sp|A2BVR0|SYT_PROM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123200263|gb|ABM71871.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 638

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 156/450 (34%), Gaps = 44/450 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD      K  L    I + S G+  W P G      +   IRE   
Sbjct: 228 LTNYLKRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWIIYQILEKYIREILR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +   +E+  P      LW +SG ++ +  +M   A  N +     P +      +F   +
Sbjct: 286 KNEYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTASEN-RTYAIKPMNCPCHIQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +      
Sbjct: 345 KSYKDLPLRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIF-CTEEQIQEEVSTFIDLV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G   I ++  + P     S +    ++   T+   +K+      P E   +  
Sbjct: 404 FEVYNTFGFDEIIIKLSTRPEKRVGSEDIWDKSEEALTEALNNKNLKWELQPGEGAFYGP 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I  +                            K    R  + G I      +S+P  + 
Sbjct: 464 KIEFSL---------------------------KDCLNRIWQCGTI---QVDFSMPVRLD 493

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           ATF   + +    V +    +G+      ++   ++ K  IW   +AP +I L++I    
Sbjct: 494 ATFVDINNEKKSPVMLHRAILGSFERFIGILIEQYEAKFPIW---LAPTQIILLSIT--- 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +     C +    L+  G     D   E+IG +   + L   PL  IVG K    + V +
Sbjct: 548 ERNIKKCIEFNNLLNTKGYRSKIDIRNEKIGYKIRESTLARIPLIGIVGDKEQELNSVTL 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +           L+ +    +        V
Sbjct: 608 RALDGSNLGIYELDNLFKLMNTLIEKKGRV 637


>gi|296117435|ref|ZP_06836023.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976037|gb|EFG82827.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 642

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 151/433 (34%), Gaps = 45/433 (10%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R      I + + G   W P G +    +   +R  Q R G  E+  P 
Sbjct: 238 EAERRDHRRIGREMGLFHIQEEAVGQIFWHPKGWRLYSVLQDYMRRAQTRNGYQEVRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG +D Y + M     +  DK +   P +      IFR  ++SYR LP   
Sbjct: 298 LVDRGLWEASGHWDKYRQHMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSYRELPLRM 357

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F  T E       +       ++  LG +
Sbjct: 358 AEFGACHRYEPSGALHGIMRVRGFTQDDAHIF-CTEEQIADETARFVRMLSAVYQDLGFE 416

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              ++    P     S +    ++    +            P E   +   +        
Sbjct: 417 HFRVKFADRPEQRAGSDDTWDRSENALKEACHMAGVEYEHNPGEGAFYGPKLEF------ 470

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKD 309
                                  +    R  + G        Y +P  + AT+ G D   
Sbjct: 471 ---------------------VLRDAIGRDWQCGT---LQVDYVMPERLDATYVGEDSAR 506

Query: 310 H-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H  V +    +G+      ++   H G+  +W   +AP ++ + +I    +       ++
Sbjct: 507 HRPVMLHRAILGSFERFLGILIEQHAGRFPMW---LAPVQVVVASIVTDAE---PYAREV 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G  V  D   E+I ++     L   P+ ++VG K   +  V ++      +E 
Sbjct: 561 VEKLQAAGVVVEADVRNEKINAKIREHSLARVPVILVVGRKEAEERTVALRRLGGKAQEI 620

Query: 429 MSLEEVINYASHR 441
           + L+E +   +H 
Sbjct: 621 VPLDEAVTALAHE 633


>gi|167564170|ref|ZP_02357086.1| prolyl-tRNA synthetase [Burkholderia oklahomensis EO147]
 gi|167571291|ref|ZP_02364165.1| prolyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 578

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 167/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD   EG K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDRDHEGLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+R+F R+GL+  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRVFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----VAGVNWGRDLPEPVIADIRNVKAGDPSPDGKGALDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +++YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADQLYAALAAAGVDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D KVE + R       +  +        +  
Sbjct: 532 HRLVIGERGLKDGKVEYQGRRDAEATLLPADSAAAVIVEKVR 573


>gi|307294661|ref|ZP_07574503.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306879135|gb|EFN10353.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 660

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 151/450 (33%), Gaps = 48/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    + Q + G   W P G      + A +R   +  G 
Sbjct: 237 LTRLEEAGKRDHRKLGAEMDLF--HLQQEAHGSVFWHPKGYLIWRELEAYMRRAIDEAGY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR----NDK---------AMIYGPTHEEV 113
            E+  P +  A  W +SG +  Y + M  + D      D+          M   P +   
Sbjct: 295 REVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNVEDEGPLVSEAADWMALKPMNCPA 354

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+  IKSYR+LP  FY+     R+E      G+MR R+F   DA+ F    +    
Sbjct: 355 HILIFKQGIKSYRDLPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CREDQIVE 413

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     RI+   G     ++    P     + E   + D  E ++  +        
Sbjct: 414 EVRAFCALADRIYKDFGFTY-SIKLALRPEKRFGTEE---MWDKAEEELRNAVAAAGLNT 469

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P    +           +                             R  +VG I     
Sbjct: 470 PEYGWEELPGEGAFYAPKLEWHLTD-------------------AIGRTWQVGTI-QSDR 509

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H  V +     G+      ++   + GK  +W   +AP +  +
Sbjct: 510 VLPERLDASYVGEDGERHRPVMLHRAIFGSYERFIGILIEHYAGKFPLW---LAPVQAVV 566

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             I +      D  + +  +L  VG     D   E+I  +     L   P  ++VG +  
Sbjct: 567 ATIVSD---ADDYAQTVAEKLRAVGIRAETDVRNEKINYKVREHSLAKVPNLLVVGRREA 623

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  V ++      +  +S+E+VI   +  
Sbjct: 624 DEGTVALRELGKEGQTILSVEDVIARLAKE 653


>gi|119946895|ref|YP_944575.1| prolyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|152112944|sp|A1SZR1|SYP_PSYIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119865499|gb|ABM04976.1| prolyl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 571

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + Y L   +E P DA I SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTNYLLSTQKEAPSDAVIVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G +E+ +P +Q ADLW+E+GR+D YG E+LR+ DR+ +  + GPTHEEV+T++ R 
Sbjct: 61  MERAGGVEVLMPIVQPADLWLETGRWDQYGGELLRIKDRHTRDFVLGPTHEEVITELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE RPRFGVMR+REF MKDAYSF +     + +Y KMF +
Sbjct: 121 EVNSYKQLPLNLFQIQTKFRDETRPRFGVMRAREFTMKDAYSFHMDQACLEKTYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCRIFDRLGLEYRPVIADTGSIGGSASHEFHVLAQSGEDAIVFS 224



 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I        A   D+ N    D  P        ARGIEVGHIF  G  Y+  M
Sbjct: 366 DNKHYCNINWGRDVELAQVEDLRNVVEGDPSPCGSGTLSMARGIEVGHIFQLGDTYTKAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +A      GK+  + MG YGIG  R+VAA IE ++D  GIIW +++APF + ++ +  H 
Sbjct: 426 NAGVLNQQGKNQILTMGCYGIGISRIVAAAIEQNNDKNGIIWNNTLAPFSVVIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK YA L   G +V +DD  E+ G  FA A+L+G P  +++G + + +  +E
Sbjct: 486 SHRVAELAEKYYAELQAAGIEVLFDDRKERPGIMFADAELMGIPHTLVIGDRSLDNGVIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K RL+G++++++++EVIN+   + +
Sbjct: 546 YKDRLSGVKQEVAIDEVINFIKAQLA 571


>gi|42520791|ref|NP_966706.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|73919843|sp|Q73GH6|SYT_WOLPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|42410531|gb|AAS14640.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 633

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 160/446 (35%), Gaps = 44/446 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR++ 
Sbjct: 223 KDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRKKL 282

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L S +LW  SG +D + + M  + +  +K +   P +      IF SH
Sbjct: 283 INNGYFEVKTPILVSKELWERSGHWDKFRENMFIVDESENKKLAIKPMNCPCHVQIFNSH 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +     R+E      G+MR R F   DA+ F +  E       K    
Sbjct: 343 TRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM-EEQVNSETIKFCDL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++  LG   I ++    P     + E    A+    +            P E   + 
Sbjct: 402 LKEVYSELGFNEISVKFSDRPDIRAGNDEVWDRAEKALLEAVKEAGLSYKLNPGEGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G        + LP  +
Sbjct: 462 PKLEF---------------------------VLKDAIGRNWQCGT---LQVDFILPERL 491

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + GADG K H V +    +G       ++  ++ GK  +W   +AP +++++ I   
Sbjct: 492 GAFYIGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVW---LAPTQLAILTITN- 547

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    +I   L + G  V  D   E+I  +  +      P+  IVG   V+   V 
Sbjct: 548 --EADGYATEISNILKEQGVRVKTDLTNEKISYKIRLHSSNKVPILWIVGKNEVTSKTVS 605

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +++  +  +E  SLE+         +
Sbjct: 606 VRNLGSERQESFSLEKANESLLKSIN 631


>gi|329849735|ref|ZP_08264581.1| threonyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328841646|gb|EGF91216.1| threonyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 640

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 146/443 (32%), Gaps = 44/443 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           S+  L    +   +AE   H+ + R      + +  +G+  W P G      + A +R  
Sbjct: 223 SEADLEAYIQRIEEAEKRDHRKIGRAMDLFHMQEEGRGMVFWHPKGWVLWRVLEAYMRRR 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+  P +     W +SG ++ Y   M        + +   P +      IF+ 
Sbjct: 283 LDASGYVEVKTPQVLDRSFWEQSGHWEKYRANMFVCETVEGETLSLKPMNCPGHVQIFKV 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SY+ LP    +     R E      G+MR R F   DA+ F    +       K   
Sbjct: 343 GLRSYKELPIRMAEFGACHRYEPSGSLHGLMRVRGFTQDDAHIF-CREDQIVEETAKFVR 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I   LG+++  +   + P     S  F   A+    +              +   +
Sbjct: 402 LTKLIHADLGMETAYINLATRPEIRAGSDAFWDKAEGMLAEAAKQAGVEPVIAEGDGAFY 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              +                               K    R    G        Y LP  
Sbjct: 462 APKLDF---------------------------IVKDAIGREWTCGT---LQLDYVLPER 491

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A +   DG +   V +    +G+      ++  +  GK  +W   +AP ++ +  I +
Sbjct: 492 LDAEYVAEDGSRQRPVMLHRAILGSFERFIGIMIENFAGKFPLW---LAPVQVVVAPITS 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    EK+   L   G  V  D   E+I  +     +   P+  +VG K     +V
Sbjct: 549 D---ANPYAEKVTQSLRAAGLRVEADLRNEKINYKVREHSVAKVPVIAVVGRKEAETGEV 605

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++   +  +  +SL + +    
Sbjct: 606 ALRFLGSDGQTILSLADAVQRLQ 628


>gi|212703017|ref|ZP_03311145.1| hypothetical protein DESPIG_01055 [Desulfovibrio piger ATCC 29098]
 gi|212673605|gb|EEB34088.1| hypothetical protein DESPIG_01055 [Desulfovibrio piger ATCC 29098]
          Length = 576

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 121/265 (45%), Positives = 167/265 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P +AE+ SHKL+LR GM+ + + G+Y +LPLG KAL+NV  ++REE
Sbjct: 1   MRFSSTYIPTLKESPSEAEVVSHKLLLRAGMVRKLTSGVYIYLPLGLKALENVQRVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +   DLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MDAAGFSELLMPMVIPGDLWKETGRWEYYGKELLRFKDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD +  G+  SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDSSDAGADESYKLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+   + A++G IGG+ SHEF+VLADTGE  +    +              
Sbjct: 181 YCRIFKRLGLRFRAVEADTGSIGGNFSHEFMVLADTGEDTIAACTECSYAANVERAEVVW 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           +          +       +    E
Sbjct: 241 NGTPCTETCAPYEKVATPAAHTVEE 265



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/180 (39%), Positives = 101/180 (56%), Gaps = 2/180 (1%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         +GIEVGHIF  GTKYS  M A +   +GK++ + MG YGIG  RVVA
Sbjct: 389 DPCPRCGGAIELPKGIEVGHIFKLGTKYSDAMHAVYLDENGKENVMIMGCYGIGISRVVA 448

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + IE +HD  GII+P +VAP +  L+N+    +  R   E+IYA L K G  V  DD  E
Sbjct: 449 SAIEQNHDEHGIIFPPTVAPVECILLNLDPGKEEVRAKAEEIYAMLCKAGVTVLLDDREE 508

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + G +F  ADL+G P+Q+++G K +S   +E K R TG + ++ ++ +           R
Sbjct: 509 RPGVKFKDADLIGAPMQLVLGGKGLSRGVLECKDRRTGEKGELPVDALETALPQWMEGVR 568


>gi|167586051|ref|ZP_02378439.1| prolyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 578

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 168/224 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNEFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   +G   SY KM+ +
Sbjct: 121 QIRSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDADGLAESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+  P+ A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRPVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +D+ N +  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADIRNVQKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D +GIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFIDESGKPQPMLMGCYGVGITRILGAAIEQNFDDRGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDAVREATDKLYAELAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       +  +        +  
Sbjct: 532 HRLVIGERGLKEGKLEYQGRRDAEATLLPADTAAATVVEKVR 573


>gi|254360942|ref|ZP_04977088.1| proline--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261492183|ref|ZP_05988753.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494250|ref|ZP_05990749.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092421|gb|EDN73484.1| proline--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261310102|gb|EEY11306.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312163|gb|EEY13296.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 571

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LWVESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGERDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAVPEIADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  +D +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++YA L   G +V +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEKVQAFAEELYANLKAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R +G ++ ++ E ++ +      
Sbjct: 544 EYKNRRSGEKQMIAKESLLAFLKANVK 570


>gi|209884754|ref|YP_002288611.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|209872950|gb|ACI92746.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 680

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 145/448 (32%), Gaps = 49/448 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G+  W   G      + A +R     
Sbjct: 256 YLKQLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWTVFQEIIAYMRRRL-A 310

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG ++ Y + M           + +     P +      IF
Sbjct: 311 ADYDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFAIKPMNCPGHVLIF 370

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +  +  R E      G+MR R F   DA+ F  T +       K+
Sbjct: 371 KHGLKSYRELPIRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEQQLAEECLKI 429

Query: 178 FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L  +   G +  + ++  + P     S      A++  T V               
Sbjct: 430 NDLILSTYADFGFEGELTVKLSTRPDKRVGSDAAWDHAESVMTTVL-------------- 475

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +     S N I         A      E +       +    R  + G        ++L
Sbjct: 476 -EQIKAKSGNRITTSINPGEGAFYGPKFEYVL------RDAIGREWQCGTT---QVDFNL 525

Query: 297 P--MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P    A +      K   V +     G++   A ++   + G   +W   +AP +  +  
Sbjct: 526 PERFGAFYIDEHSNKVAPVMVHRAICGSLERFAGILIEHYAGHFPLW---LAPVQAVITT 582

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      D   +++      G  V  D   E+I  +     L   P  ++VG K    
Sbjct: 583 ITSDGD---DYAREVFEACRAAGLRVDIDLRNEKINYKVREHSLAKVPALLVVGKKEAET 639

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V I+         + L+E +   +  
Sbjct: 640 RAVSIRRLGKEGSSVVPLDEALKALTTE 667


>gi|257467995|ref|ZP_05632091.1| threonyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062281|ref|ZP_07926766.1| threonine-tRNA ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313687957|gb|EFS24792.1| threonine-tRNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 637

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 162/443 (36%), Gaps = 46/443 (10%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D      +L L    + ++  G   +LP G    + +  + R E   
Sbjct: 228 KAYLTLLEEAERRDHRKLGKELDLF--FVSEYGPGFPIFLPKGMVIRNTLIDLWRREHTL 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P + + +LW  SG + +Y + M   +  ++      P +       ++  + 
Sbjct: 286 AGYQEITTPIMLNKELWEISGHWFNYRENMYT-STIDETEFAIKPMNCPGGILAYKYQLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++ P    ++    R E      G+MR R F   DA+ F +TP+  +     +     
Sbjct: 345 SYKDFPIRCGELGTVHRHEFSGALHGLMRVRSFTQDDAHIF-MTPDQIEEEIIGVVELID 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           + + +L      +   + P     S+E    A+                 P +   +   
Sbjct: 404 KFYSKLFGFEYHIELSTKPEKAIGSNEIWEKAEAALAGALDKIGKPYKLNPGDGAFYGPK 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R  + G I      ++LP     
Sbjct: 464 LDFK---------------------------IKDAIGRTWQCGTI---QLDFNLPERFDI 493

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ G DG+ H  V +     G++     ++     G   +W   +AP ++ ++ I     
Sbjct: 494 SYIGEDGEKHRPVMIHRVVYGSIERFIGILIEHFAGAFPLW---LAPTQVKILTIN---D 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEI 418
                 ++I+  L + G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 EVVPYAKEIFKALQERGIRAEIDDRAESIGYKIREANGKYKVPVQLILGKNEVENREVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +E M L+E ++     
Sbjct: 608 RKFGSQQQESMKLDEFLDIIVDE 630


>gi|251797797|ref|YP_003012528.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545423|gb|ACT02442.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 571

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 118/232 (50%), Positives = 156/232 (67%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  LP L+E P +AE  SH+LMLR G+I Q + GIY++LP G+  L  +  IIREE
Sbjct: 1   MRQSQLLLPTLREAPSEAEAVSHQLMLRAGLIRQLAAGIYTYLPAGRLVLRKLEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q ADLW +SGRY+ YG E++RL DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDNAGCQEVFMPAMQPADLWRQSGRYEKYGPELVRLKDRHDREFALGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPR+G++R REF+MKDAYSFD   EG   SY +M+ +
Sbjct: 121 EVNSYRQLPVTLYQIQTKFRDEKRPRYGLLRGREFMMKDAYSFDADWEGLNESYQRMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A++G IGG+  +HEF+ LAD GE  +          
Sbjct: 181 YHRIFSRCGLHFRPVEADAGTIGGEGGTHEFMALADIGEDTIAACDHCRYAA 232



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMS 299
                +        A   DV N  L D  P     K    RGIEVG +F  GTKYS  M 
Sbjct: 368 YHWKHVRPGAHFVAARLRDVRNAVLGDGCPNCAEGKLRMFRGIEVGQVFKLGTKYSEVMQ 427

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A +  A G +  + MG YGIG  RV++AV+E  HD +GI WP  +AP+++ ++ + A D 
Sbjct: 428 ANYLDATGSEKPIIMGCYGIGISRVMSAVVEQHHDEQGIRWPLELAPYQVHVVPVSAKDG 487

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+Y  L   G +V  DD  E+ G +F  +DL+G P++++VG +  +D  VE+K
Sbjct: 488 QQMDVAGKLYRELMSAGFEVLLDDRDERPGVKFKDSDLIGIPVRIVVG-RQAADGVVELK 546

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
           +R  G     + EE +   +  F +
Sbjct: 547 YRNEGEVLQATTEEALGLVTGYFRS 571


>gi|253689709|ref|YP_003018899.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259511609|sp|C6DDF6|SYP_PECCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|251756287|gb|ACT14363.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 572

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSQIFSRMDLDFRAVQADTGSIGGNASHEFQVLAASGEDDIVFS 224



 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  G+KYS  +
Sbjct: 366 DGKHYFGINWERDVALPQVADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H 
Sbjct: 426 KATVQGEDGRNQTLTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E
Sbjct: 486 SFRVKEVAEDIYQQLRAKGIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            KHR  G ++ +   E++++     
Sbjct: 546 YKHRRIGEKQMIKTNEIVDFLLANI 570


>gi|251793646|ref|YP_003008376.1| prolyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247535043|gb|ACS98289.1| hypothetical protein NT05HA_1971 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 571

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLFSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V  S
Sbjct: 181 YSNIFSRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFS 224



 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DG+   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 NATVQGEDGRPMVLTMGCYGIGVTRVVAAAIEQHHDERGIIWPCDEMAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  ++  E +Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQEFAEDLYRTLLAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++++   +  
Sbjct: 544 EYKNRRTGEKQMIAKDQLLDFLKSQVK 570


>gi|183221772|ref|YP_001839768.1| threonyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911846|ref|YP_001963401.1| threonyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776522|gb|ABZ94823.1| Threonine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780194|gb|ABZ98492.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase; ThrRS)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 638

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 44/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L +      + G   W P G    + + + IREE  
Sbjct: 234 LDEYIFLIEEAKKRDHRKLGKELDLFS--FQDEAPGFPFWHPKGTVLWNTLASYIREECF 291

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P + ++ LW +SG +D++ + M    D ++      P +      I++ H+
Sbjct: 292 RRGYQEIKTPAILNSSLWKKSGHWDNFKENMY-FTDIDESEFAVKPMNCPGCCLIYKYHM 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  F ++    R E+     G+ R R F   DA+ +    +  +     +    
Sbjct: 351 HSYRELPLRFMELGNVHRHEMSGVLHGLFRVRAFTQDDAHIY-APLDKVESEVEDIIDFT 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ + G         + P     S E   LA          K         +   +  
Sbjct: 410 FDVYKKFGFTEFKTFIATRPEKSQGSDEDWNLATQALHDALKKKGIEYGIKEGDGAFYGP 469

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I  N                            K    R  + G +      +S+P    
Sbjct: 470 KIEFN---------------------------IKDSLGRLWQCGTV---QIDFSMPNRFE 499

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             F  +DGK H  V +     G++     ++    +GK  +W   + P +I ++ +    
Sbjct: 500 LDFTASDGKKHAPVMIHRAIYGSLERFIGILIEHFEGKFPLW---LNPTQIRVLTVA--- 553

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  +++Y  L   G  V  D   E+IGS+   + +      +I+G K      +  
Sbjct: 554 ETHSDYAKEVYQDLVMQGFRVELDVRNEKIGSKIRDSIMKRSSYTLILGDKEKEAGSISY 613

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           +         +S +  ++      +
Sbjct: 614 RRMGEETTATVSRDGFLSLLKGELN 638


>gi|220934299|ref|YP_002513198.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254782924|sp|B8GPP4|SYP_THISH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219995609|gb|ACL72211.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 574

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L  L+E P DAE+ SH+LMLR GMI + + G+YSW PLG + L  V  ++R+E
Sbjct: 1   MRATRFPLATLKETPADAEVISHQLMLRAGMIRRLASGLYSWTPLGLRVLRKVEGLVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD  R 
Sbjct: 61  MDRAGALELLMPAVQPAELWQESGRWEQYGPELLRLKDRHMREFCFGPTHEEVITDYVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  +YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF +  +  K +Y +M  +
Sbjct: 121 EVKSYRQLPVNYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHVDEDSLKETYARMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG+ SHEF VLAD+GE  +  S       
Sbjct: 181 YTRIFTRCGLDFRAVLADTGSIGGNASHEFHVLADSGEDAIAFSDVSDYAA 231



 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P  +      RGIEVGHIF  G KYS  M
Sbjct: 366 DGKHYFGINWERDLALPPVADLRNVVAGDPSPDGQGSLQIRRGIEVGHIFQLGRKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
            AT     G+   V MG YGIG  RVVAA IE +HD +GIIWP+++APF ++L  I A  
Sbjct: 426 GATVLDEQGRSLVVTMGCYGIGVSRVVAAAIEQNHDAQGIIWPEALAPFTVALCPINAQK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q  R+A + +Y RL   G +VF+DD G + G+ FA  +L+G P ++++G + +   ++E
Sbjct: 486 SQRLREAADALYERLLNAGFEVFYDDRGLRPGAMFADMELIGIPHRLVLGERGLDAGEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R       ++L+ V+++   R +
Sbjct: 546 YKGRRDTDTTQVALDGVLDFLRQRMN 571


>gi|310779485|ref|YP_003967818.1| prolyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748808|gb|ADO83470.1| prolyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 570

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  ++  L+E P+DAE+ SHKLMLR GMI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MKFSNLYVKTLKETPKDAEVISHKLMLRAGMIKKLASGVYTYLPLGYKALRKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+ E+ +P LQ +++W ESGR+D+ G EM+R+ DR+D+  + GPTHEEV+TDI R+
Sbjct: 61  MERAGSQEIFMPVLQPSEIWQESGRWDTMGPEMMRIKDRHDREFVLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQIQ KFRDE RPRFG+MRSREFLMKDAYSF  + E   + +  M  +
Sbjct: 121 DISSYKSLPMNLYQIQTKFRDERRPRFGLMRSREFLMKDAYSFHASEECLDNEFENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A+SG IGG  S EF VLA++GE ++          
Sbjct: 181 YTRIFERCGLKFRSVEADSGAIGGSGSQEFHVLAESGEDEIIYCDSCGYAA 231



 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 96/181 (53%), Gaps = 1/181 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           +            SARGIE GH+F  GTKYS  M ATF   +GK + + MG YGIG  R 
Sbjct: 391 KDEGCPRCSGTLSSARGIETGHVFKLGTKYSESMKATFLDVNGKSNVMMMGCYGIGVSRT 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            AA IE ++D  GIIWP ++AP+ + ++     ++      EKIY  L + G D   DD 
Sbjct: 451 TAAAIEQNYDENGIIWPSAIAPYVVDVVPANMKNKDQVALGEKIYTELLEAGIDTVLDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F  ADL+GFP +V+ G K  ++  +EIK R TG   D+  EEV+         
Sbjct: 511 NERPGFKFKDADLIGFPFKVVSG-KQAAEGIIEIKIRKTGETLDVKSEEVVTTIKELMKK 569

Query: 445 N 445
            
Sbjct: 570 Y 570


>gi|254427770|ref|ZP_05041477.1| prolyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196193939|gb|EDX88898.1| prolyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 572

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 154/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE
Sbjct: 1   MRTSQYLLATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +
Sbjct: 121 ELHSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCAIFDRLGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFSD 225



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 113/209 (54%), Gaps = 4/209 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+        RGIEVGHIF  GTKYS  +
Sbjct: 364 DGKHHFNINWERDVALPQIADLRNVVNGDPSPDGTGTLSIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
            AT    +GK   + MG YGIG  RVVAA IE ++D +GIIWP+++APF+++LI +    
Sbjct: 424 GATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGIIWPEAIAPFQVALIPVNIKK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
               R+  E +YA L+  G +V +DD   E++G + A ++L+G P ++++  + + +  +
Sbjct: 484 SPRERELAETLYAELTAAGIEVIFDDREKERLGVKLADSELIGIPHRIVIAERGMDNGVL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E K R    + ++ ++ V+ +   +   N
Sbjct: 544 EYKGRGDADKTEVPVDVVVAFIKGKLGTN 572


>gi|145588388|ref|YP_001154985.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083506|sp|A4SVA7|SYP_POLSQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145046794|gb|ABP33421.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 580

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ FL  L+E P DAE+ SHKLM+R G+I + S GIY++LPLG K +  V  IIREE
Sbjct: 1   MKASQSFLATLKEAPSDAEVVSHKLMVRAGLIRKISAGIYNYLPLGLKVIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TD+ R+
Sbjct: 61  MNRAGAIELLMPMIQPAELWQETGRWEKMGPELLRIKDRHDRDFLIQPTSEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFSMKDAYSFDRDTEGLKKSYQTMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL+   + A++G IGG  S EF V+ADTGE  +   
Sbjct: 181 YTQIFKRMGLEFRAVTADNGAIGGSGSQEFHVIADTGEDAIVYC 224



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 3/210 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSA 300
             L  +      P     D+ N  + D  P+ K      RGIEVGH+F  GT+YS  M  
Sbjct: 370 HHLTGVNWGRDLPEPLVLDIRNAVIGDPSPDGKGVVDICRGIEVGHVFQLGTRYSEAMGC 429

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQ 359
           T+    GK   + MG YGIG  R++ A IE  HD +GIIWP S+AP ++ +  +     +
Sbjct: 430 TYLDQQGKAQPMVMGCYGIGVTRLLGAAIEQGHDERGIIWPISMAPVEVVICPMGYEKSE 489

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             + AC++++  L   G DV  DD  E+ G+ FA  +L+G P +V++G + ++DS+VE K
Sbjct: 490 PVKAACDQLHDELVAAGIDVILDDRNERPGAMFADWELIGAPFRVVIGDRGLADSQVEFK 549

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            R     +++ L ++           +  +
Sbjct: 550 GRTDADSQNIPLAQIKEKVISAVQAAKNAV 579


>gi|160946146|ref|ZP_02093357.1| hypothetical protein PEPMIC_00108 [Parvimonas micra ATCC 33270]
 gi|158447669|gb|EDP24664.1| hypothetical protein PEPMIC_00108 [Parvimonas micra ATCC 33270]
          Length = 648

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 165/445 (37%), Gaps = 39/445 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L  L++   RD      +L +   MI Q    G+  WLP G      V   I +++   
Sbjct: 234 YLEFLEDAKQRDHRKIGKELGIF--MISQNVGAGLPFWLPKGATIRRVVERYIVDKEIEC 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIK 123
           G   +  P L + DL+  SG +D Y   M    D  N + ++  P +     +I+ + + 
Sbjct: 292 GYEHVYTPILANVDLYKTSGHWDHYQDSMFPPMDLGNGELLVLRPMNCPHHMEIYNNDVH 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+  P    ++ +  R E+     G+ R RE  + DA+ F + P+  K  + ++     
Sbjct: 352 SYKEFPIRIAELGMMHRYEMSGTLSGLQRVREMTLNDAHIF-VRPDQIKEEFTRVVNLMK 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +K+   R                  D    + +   D M     +      D 
Sbjct: 411 SVYEDFDIKNFRFRLSYR--------------DPENKEKYFDDDEMWNNAEAMLKSAMDD 456

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +       +     A      + ++  ++   + +S   ++    F    ++      T+
Sbjct: 457 LGYE--YFEAKGEAAFYGPKLDVQVKTAIGLEETLSTIQLD----FLLPERF----DLTY 506

Query: 303 KGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G DGK+    V +    +  M    A +   + G    W   +AP ++ ++ I      
Sbjct: 507 VGEDGKNTHRPVVIHRGIVSTMERFVAYLIEEYKGAFPTW---LAPEQVKILPI---SDK 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++    +K    V  DD  E+IG +   A L   P  +IVG   V++  V ++ 
Sbjct: 561 FNDYAYELQKEFAKKDIRVAVDDRTEKIGLKIREAQLAKIPYSLIVGENEVNERTVSVRK 620

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G +  M  E  ++      ++ 
Sbjct: 621 RGEGDKGSMKFEAFLDKILEEVNSK 645


>gi|152977868|ref|YP_001343497.1| prolyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171472919|sp|A6VKR5|SYP_ACTSZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150839591|gb|ABR73562.1| prolyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 571

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRSMASGLYNWLPTGVKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +QSA+LW ESGR++ YG E+LR +DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQSAELWQESGRWEQYGPELLRFSDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y  M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTQESLQQTYEVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YTNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDAAMPEAFDLRNVAEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPTDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  R   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +   ++
Sbjct: 484 KSESVRAFAEELYQTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDKGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R  G ++ ++ + ++ + +    
Sbjct: 544 EYKNRRNGEKQMIAKDRLLAFLAENVK 570


>gi|109897601|ref|YP_660856.1| prolyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|123171506|sp|Q15WD6|SYP_PSEA6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109699882|gb|ABG39802.1| prolyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 571

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 161/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR G++ + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGLVRKLASGLYTWLPTGLRVLNKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q ADLW ESGR+D YG E+LR+ DR+ +  + GPTHEEV+T + ++
Sbjct: 61  MDRAGSLEILMPVVQPADLWQESGRWDEYGPELLRIKDRHYRDFVLGPTHEEVVTALVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ+Q KFRDE+RPRFGVMR REF MKDAYSF L+ E    +Y+ MF +
Sbjct: 121 EVSSYKQLPLNVYQVQTKFRDEVRPRFGVMRGREFTMKDAYSFHLSDECLNKTYDDMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y R+F R+ L+  P+ A++G IGG+ SHEF VLAD+GE  +  S 
Sbjct: 181 YCRVFERINLEFRPVIADNGSIGGNASHEFHVLADSGEDDIAFSN 225



 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 3/194 (1%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             +  A     +D+ N +  D  P+ +      RGIEVGHIF  G+KYS  ++      +
Sbjct: 376 NWERDAKEFQEADIRNVQAGDPSPDGQGTLEIKRGIEVGHIFQLGSKYSEALNCGVLDEN 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   + MG YGIG  R+VAA IE +HD  GIIWPD++APFK++++ +  H     +   
Sbjct: 436 GKHQVLNMGCYGIGVSRIVAAAIEQNHDKYGIIWPDAIAPFKVAIVPMNMHKSHRIQQVA 495

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +YA+L   G +V +DD  E+ G  F   +L+G P  +++G + + + KVE K+R +G 
Sbjct: 496 EDLYAQLKAAGVEVLFDDRKERPGVMFNDMELVGVPHTIVIGERNLDEQKVEYKNRRSGE 555

Query: 426 REDMSLEEVINYAS 439
           ++ + + ++  + S
Sbjct: 556 KQLIDIPQLAEFVS 569


>gi|148827919|ref|YP_001292672.1| prolyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166980128|sp|A5UHN3|SYP_HAEIG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148719161|gb|ABR00289.1| prolyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 572

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++            D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWVRDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|257792203|ref|YP_003182809.1| prolyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|257476100|gb|ACV56420.1| prolyl-tRNA synthetase [Eggerthella lenta DSM 2243]
          Length = 578

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 109/237 (45%), Positives = 162/237 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEIASH+L+LR G I + + G+Y++LPLG++ L  V  I+REE
Sbjct: 1   MRMSQLYAPTLKEDPADAEIASHRLLLRAGFIRKTASGVYTFLPLGKRVLAKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 61  MDGIGAQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP + YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF    E  + +Y+ M  +
Sbjct: 121 ELRSYKELPLSLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHADQESLQKTYDDMSEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RI  R+G+   P+ A+ G IGG ++ EF+ LA+ GE ++            + + 
Sbjct: 181 YGRICDRMGMDYRPVEADPGQIGGSVTCEFMALAEAGEAELVHCTCGYAANTEAGDC 237



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 115/231 (49%), Gaps = 2/231 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E+    +   +           +D                  +D+   +  DS P     
Sbjct: 334 ESAYVIAARSLQAVPKWVVGANEDGYHYVGARLGEDFQVDEWADLCIVQPGDSCPSCGLP 393

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIEV  +F  G KYS  M ATF   DG +    MG YG+G  R +AA++E  +D 
Sbjct: 394 LDGARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMGCYGVGISRTMAAIVEQHNDE 453

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP +VAP  + +I +   D   + A EK+ + L+K+G +V  DD  E+ G +FA A
Sbjct: 454 NGIMWPLTVAPAHVCVIPLTVGDDEVQPAAEKLASDLAKLGLEVVIDDRKERAGVKFADA 513

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G+PLQVIVG + +++ KVEIK R TG R D+ L  + +  +    N +
Sbjct: 514 DLIGWPLQVIVGKRGLAEQKVEIKRRSTGARRDIPLAALTDALAFSQRNAK 564


>gi|27468275|ref|NP_764912.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis ATCC 12228]
 gi|293366369|ref|ZP_06613048.1| threonine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38258358|sp|Q8CS74|SYT_STAES RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27315821|gb|AAO04956.1|AE016748_190 threonyl-tRNA synthetase 1 [Staphylococcus epidermidis ATCC 12228]
 gi|291319494|gb|EFE59861.1| threonine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733742|gb|EGG70068.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737259|gb|EGG73513.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 645

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M        D+AM+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++    R E      G+ R R   + D++ F + P+  K  + ++    
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +    R                  D  +   +   D M     S   +  D
Sbjct: 407 QDVYKDFGFEDYRFRLSYR--------------DPEDKHKYFDDDEMWEKAESMLKEASD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +      E+     A      + ++  ++ + + +S   ++    F    ++      T
Sbjct: 453 ELG--LTYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLD----FLLPERF----DLT 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H   +   G+ +      A +     G    W   +AP ++ +I +     +
Sbjct: 503 YIGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTW---LAPMQVEIIPVNI--DL 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L   G  V  DD  E++G +   A +   P Q++VG + V   +V ++ 
Sbjct: 558 HYDYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDQEVEHQEVNVRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +  +E +  +E I          +
Sbjct: 618 YGSEKQESVEKDEFIWNVIDEIRLKK 643


>gi|218530550|ref|YP_002421366.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|218522853|gb|ACK83438.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 675

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 144/447 (32%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +        +   G+  W   G      + A +R     
Sbjct: 232 YLHRLEE----AERRDHRRLGKEMDLFHFQEEGPGVVFWHAKGWTIFQELIAYMRRRLKG 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M           + +     P +      IF
Sbjct: 288 -DYAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +       K+
Sbjct: 347 KHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEDQLAAECLKI 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++    P     S      A+   TQV                
Sbjct: 406 NDLILSTYADFGFDQILVKLSMRPEKRVGSDALWDHAEAVMTQVL--------------- 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E +       +    R  + G        ++LP
Sbjct: 451 AQIEEQSGGRIKTAVNPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLP 501

Query: 298 --MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A++  AD +     M      G+M     ++     G   +W   +AP ++ +  I
Sbjct: 502 ERFDASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLW---LAPVQVVVATI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++   L + G  V  D   E+I  +     L   P+ + +G +   + 
Sbjct: 559 TSD---ADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEER 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++   +     M+L+  +      
Sbjct: 616 TVSVRRMGSQKTTTMALDAALAAFIEE 642


>gi|189424928|ref|YP_001952105.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|189421187|gb|ACD95585.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 646

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 155/450 (34%), Gaps = 45/450 (10%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +L  L+E  R D      +L L +    +   G   W P G      +    R+E
Sbjct: 237 KELEAYLHRLEEAKRRDHRKLGRELDLFS-FNDEVGAGFAIWHPKGAMLRTLLEDFERKE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +     +  P +   +LW  SG YD+Y + M    + ++++    P +      I++S
Sbjct: 296 HLKRDYDIVVGPQILKTELWQRSGHYDNYRENMY-FTEVDEQSFGVKPMNCLSHMMIYKS 354

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP  ++++    R E      G++R R F   DA+    TPE        +  
Sbjct: 355 QLRSYRDLPQRYFELGTVHRHERAGVLHGLLRVRCFTQDDAHIL-CTPEQLDAEIKGVLK 413

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +    G +   M   + P     S E    A TG           DF I   +  F
Sbjct: 414 FVSDVMGIFGFEY-EMELSTRPEKSIGSDEDWERA-TGALLGALKDTGRDFEINEGDGAF 471

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                   + +                             R  +   I      ++LP  
Sbjct: 472 YGPKIDIKLRDC--------------------------LDRRWQCATI---QCDFTLPER 502

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+  +DG K   V +    +G++     V+     G   +W   +AP +  ++ +  
Sbjct: 503 FDLTYVASDGEKKRPVMVHRVILGSIERFIGVLIEHFAGNFPLW---LAPVQAVVLTVTD 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +        +++Y +L   G  V  D   E++  +   A L   P  +++G K V    V
Sbjct: 560 N---QIPYAQEVYKQLRSAGIRVQEDLRNEKLNFKIREAQLQKIPYMLVIGDKEVEQGTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             + R       M  +  I +        +
Sbjct: 617 TPRFRDGKNLHAMKPDAFIAFVEAETKAYK 646


>gi|330807862|ref|YP_004352324.1| proline--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375970|gb|AEA67320.1| Proline--tRNA ligase (proline tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 571

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 113/225 (50%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+ +P  Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGSLEVLMPGTQPAELWQESGRWEEYGPELLRIKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD+YSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDSYSFHADLASLQITYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSN 225



 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   ++MG YGIG  RVVAA IE ++D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCEVLGENGKPVTLEMGCYGIGVSRVVAAAIEQNNDEKGIIWSDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            + R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DLVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + + +V+++   R  
Sbjct: 544 EYKSRTEAEPQALPVADVLSFLQARIR 570


>gi|307634865|gb|ADI84351.2| threonyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 645

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 146/442 (33%), Gaps = 44/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +        G   W P G      +    R E  + G
Sbjct: 241 YLEKIEEAKRRDHRKLGRELDLFS-FSDDVGAGFVIWHPKGAMLRTLLEDFERREHLKRG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG YD+Y + M    +   +     P +      I++S ++SY
Sbjct: 300 YDIVVGPQILKTELWQRSGHYDNYRENMY-FTEVEGQGFGIKPMNCLSHMMIYKSQLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F+++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 359 RDLPLRFFELGTVHRHERAGVLHGLLRVRCFTQDDAHIL-CTPEQLDAEIKGVISFVNDV 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P     S E    A                   +      D   
Sbjct: 418 MGIFGFDY-EMELSTRPEKSIGSDEDWERA-----------------TGALLGALKDSGR 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              I E   A Y    D+      D          R  +   I      ++LP     T+
Sbjct: 460 PYEINEGDGAFYGPKIDIKLRDSLD----------RKWQCATI---QCDFTLPERFDLTY 506

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG+     M     +G++     V+     G   +W   ++P +  ++ +  + Q  
Sbjct: 507 VDADGERKRPVMVHRVILGSIERFIGVLIEHFAGNFPLW---LSPVQAIVLTVTDNQQ-- 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +++  L   G  V  D   E++G +   A L   P  +++G K V    V  + R
Sbjct: 562 -PYAAQVFETLRTNGVRVQKDFRNEKLGFKIREAQLQKIPYMLVIGDKEVESGTVTPRFR 620

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  M  EE + + +    
Sbjct: 621 DGSNLAAMKPEEFVAFVNDEVK 642


>gi|170748342|ref|YP_001754602.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|170654864|gb|ACB23919.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 141/447 (31%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G+  W   G      + A +R     
Sbjct: 232 YLHRLEE----AERRDHRRLGREMDLFHFQEEGPGVVFWHAKGWTIFQELIAYMRRRLRG 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M           + +     P +      IF
Sbjct: 288 -DYAEVNAPQILDKALWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +       K+
Sbjct: 347 KHGLKSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEDQLADECLKI 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     S      A+   T+V                
Sbjct: 406 NDLILSTYADFGFDQIVVKLSTRPEKRVGSDALWDHAEDVMTRVL--------------- 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  S   I         A      E +       +    R  + G        ++LP
Sbjct: 451 AQIEEQSGGRIRTAVNPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLP 501

Query: 298 --MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +  ADG      M      G+M     ++     G   +W   +AP ++ +  I
Sbjct: 502 ERFGAFYIDADGARKPPVMVHRAICGSMERFTGILIEHFAGHFPLW---LAPVQVVVATI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                        +   L + G  V  D   E+I  +     L   P+ + +G +   + 
Sbjct: 559 TG---EADAYARDVIRTLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEER 615

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V I+   +     + L E +      
Sbjct: 616 TVSIRRLGSQQTRTLPLTEAVAAFVEE 642


>gi|50550793|ref|XP_502869.1| YALI0D15620p [Yarrowia lipolytica]
 gi|49648737|emb|CAG81057.1| YALI0D15620p [Yarrowia lipolytica]
          Length = 445

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 138/455 (30%), Positives = 213/455 (46%), Gaps = 48/455 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L++       +   L+  TG +   S G+ + LPLG +    +  IIR E 
Sbjct: 4   RLSRLTTRRLKDVTPSTTASD--LLAVTGYVSYPSSGLANLLPLGLRVQRKIENIIRSEL 61

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+S+      DLW ++GR ++   E+ R+ D ++   I  PTHEE +T++    
Sbjct: 62  DSIGCAEVSLSNFSDPDLWRKTGRINNG--ELFRVNDGSEDPPIIAPTHEEEITNLIAQK 119

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I S ++LP  +YQI  K+R+E RPR G++R +EF MKD YSFD+    +  SY+ +  +Y
Sbjct: 120 ISSPKDLPILWYQIGKKYRNEARPRGGLLRGKEFTMKDLYSFDVDEPRALESYDLVRKAY 179

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD------------ 229
            +IF +LG+    + A+SG IGG  SHE+ V+  +GE  +                    
Sbjct: 180 DQIFGKLGVPVKSVAADSGAIGGSHSHEYHVIDASGEDTLVTCSSCDYSANIEVAERAAG 239

Query: 230 -------------------FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                                +     D       +   +        + ++   K  DS
Sbjct: 240 DSETICTEVNGVLVTHESSHAVNPRLVDRALSSYGHDAYKISMLRDGVSHNLTTPKEGDS 299

Query: 271 LPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            P        +  IEVGH FY GTKYS  +S  FK ++ K     MG YGIG  R+VAA+
Sbjct: 300 CPNCTSSLKFSNAIEVGHTFYLGTKYSKSLSCDFKNSENKLTPAFMGCYGIGITRLVAAI 359

Query: 329 IESSHDGKGIIWPDSVAPFK-ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            E S D  G+ WP +VAP++ + ++   A +    D   ++ A L     D   DD  ++
Sbjct: 360 AEVSRDQHGLKWPSNVAPYETVVILGGGATESTLLDKASELGALLQ----DAVIDDRPKR 415

Query: 388 -IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            IG +   A L+GFP QV+V  K      +E+ HR
Sbjct: 416 SIGWKINEAKLMGFP-QVVVVKKD----GIEVIHR 445


>gi|304312891|ref|YP_003812489.1| Prolyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301798624|emb|CBL46856.1| Prolyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 574

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E+P DAE+ SHKLMLR GMI + + G+Y+W P G + L  V  I+REE
Sbjct: 1   MRASQYLLATLREDPADAEVISHKLMLRAGMIRRLAAGLYTWTPTGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P  Q A+LW ESGR+ +YG E+LR  DR+ +  + GPTHEEV++D+ R+
Sbjct: 61  MDRAGAQEVLMPVTQPAELWQESGRFQAYGPELLRFKDRHARDFVLGPTHEEVISDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE RPRFGVMR+REFLMKD+YSF +T +  + +Y  M+ +
Sbjct: 121 NVQSYKQLPANFYQIQTKFRDETRPRFGVMRAREFLMKDSYSFHMTEDCLRETYQVMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   + A++G IGG+ SHEF VLA  GE  +  S       
Sbjct: 181 YTAIFTRLGLEFRAVLADTGSIGGNNSHEFHVLASAGEDSIAFSNQSDYAA 231



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 114/203 (56%), Gaps = 3/203 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSA 300
                      A +A  +D+ N    D  P+ K      RGIEVGHIF  GTKYS  ++ 
Sbjct: 369 FHYRGANWNRDANFAEVADLRNVVEGDPSPDGKGEILIRRGIEVGHIFQLGTKYSKALNV 428

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ- 359
           T    +GK   + MG YGIG  RVVAA IE ++D +GIIWPD++APF I+LI +  H   
Sbjct: 429 TVLDENGKSQVLPMGCYGIGVSRVVAAAIEQNNDAQGIIWPDAIAPFHIALIPMNQHKSP 488

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               A E +Y RL + G +VF+DD  E+ G +FA A+L+G P ++++G + +   +VE K
Sbjct: 489 RVHAAAEALYERLKQAGYEVFYDDRKERPGVKFADAELIGIPHRIVIGDRGLDQQQVEYK 548

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           HR      D+ L++++ +   R 
Sbjct: 549 HRTDKETSDVGLDQLVEFLQTRV 571


>gi|254284280|ref|ZP_04959248.1| prolyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219680483|gb|EED36832.1| prolyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 564

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/225 (54%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR GMI + + GIY+W+PLG + L  V A++REE
Sbjct: 5   MRASQFPLFTLKETPSDAEIISHQLMLRAGMIRRIAAGIYTWMPLGLRVLRRVEAVVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+++P +Q A+LW ESGR++ YG E+ RL DR+D+    GPTHEEV++ + RS
Sbjct: 65  MNNAGALEITMPVVQPAELWQESGRWEQYGPELARLRDRHDREFCLGPTHEEVVSALARS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y +M  +
Sbjct: 125 EIKSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDQASQEETYWRMHDA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF+RL L   P+ A++G IGG+ SHEF VLAD+GE  +  S 
Sbjct: 185 YSRIFNRLSLAFRPVEADTGSIGGNHSHEFHVLADSGEDAIAFSD 229



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 87/196 (44%), Gaps = 3/196 (1%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F  L                          +D   L             T+D+      D
Sbjct: 337 FGSLGPVDLDTRIIVDYAAAALASFACGANEDGFHLTGAHWNRDVGNFETADLREVVAGD 396

Query: 270 SLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             P  +      RGIEVGHIF  GTKYS  M A     +GK   + MG YGIG  R+VAA
Sbjct: 397 PSPCGEGSLEICRGIEVGHIFQLGTKYSEAMGAEVLDENGKSTAMAMGCYGIGITRIVAA 456

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            IE ++D  GIIWP S+APF ++L+ +     Q   DA E +Y+   + G DVF DD  +
Sbjct: 457 AIEQNNDDNGIIWPVSMAPFTVALVPLNMGKSQAVADATEDLYSACVEAGIDVFMDDRDQ 516

Query: 387 QIGSQFAVADLLGFPL 402
           + G +FA  +L+  P 
Sbjct: 517 RPGVKFAEMELIASPF 532


>gi|297808713|ref|XP_002872240.1| AT5g26830/F2P16_90 [Arabidopsis lyrata subsp. lyrata]
 gi|297318077|gb|EFH48499.1| AT5g26830/F2P16_90 [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 163/447 (36%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+         HQ S G Y +LPLG +  + +   I+
Sbjct: 304 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 359

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++  + G  E+  P + +  LW  SG  D+Y   M    +   +     P +      IF
Sbjct: 360 KQYWQRGYTEVITPNMYNMALWETSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIF 418

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  ++SYR LP       +  R+E      G+ R R F   DA+ F  T E  K     +
Sbjct: 419 QHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTT-EQVKEEVQGV 477

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     ++  + P       E    A+    +   +          +  
Sbjct: 478 LEFIDYVYKVFGFTY-ELKLSTRPEKYLGELETWDKAEADLKEAIEAFGKPLVLNEGDG- 535

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D++    + +   ++    F    +++L 
Sbjct: 536 -------------------AFYGPKIDITVSDAMNRKFQCATLQLD----FQLPIRFNLE 572

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A  +    K   V +    +G++  + A++   + GK   WP  ++P +  +  I   
Sbjct: 573 YAA--EDEAKKAKPVMIHRAVLGSVERMFAILLEHYKGK---WPFWISPRQAIVCPISEK 627

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      EK+   +   G  +  D    +I  +   A L  +   ++VG    +  +V 
Sbjct: 628 SQK---YAEKVQKEIHDAGFYIDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVS 684

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R +      S+E+++     + + 
Sbjct: 685 VRLRDSAAHSVKSIEDLLEEFKAKIAE 711


>gi|260802092|ref|XP_002595927.1| hypothetical protein BRAFLDRAFT_268618 [Branchiostoma floridae]
 gi|229281179|gb|EEN51939.1| hypothetical protein BRAFLDRAFT_268618 [Branchiostoma floridae]
          Length = 681

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 155/445 (34%), Gaps = 41/445 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +E    A+   H+ + R       H+ S G   +LP G    + +   I+EE ++
Sbjct: 262 MLKEWKEFQEQAKERDHRKIGREQELFFFHELSPGSCFFLPKGAHIYNKLIDYIKEEYHK 321

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +  LW  SG +D Y + M        +     P +      ++    +
Sbjct: 322 RGFQEVVSPNMYNVKLWKTSGHWDHYEENMFSFEVEK-ETFALKPMNCPGHCLMYDVRPR 380

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F  T E  +           
Sbjct: 381 SWRELPLRMADFGVLHRNELSGTLTGLTRVRRFQQDDAHIF-CTMEQLEDEIEGCLEFMN 439

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   + +   + P       E    A+                 P +       
Sbjct: 440 SIYTTFGFD-LKLFLSTRPEKAIGDKETWDRAEKHLASALDKFGMPWKLNPGDG------ 492

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++FD+L    + +   ++  +   F   Y        
Sbjct: 493 --------------AFYGPKIDIQVFDALRRAHQCATIQLDFNNPERFNLTYVS------ 532

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++    A++  +  GK   WP  ++P +  ++ +        
Sbjct: 533 GDGDEKKRPVMIHRAILGSVERFIAILCENFGGK---WPFWLSPRQAMIVPVSPD---QN 586

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+   + + G     D D G+ +  +   A L  +   ++VG K V    V ++ R
Sbjct: 587 EYAQKVRNSIHEAGFMCEADCDPGDTMNKKIRNAQLAQYNFIMVVGKKEVESGTVNVRTR 646

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
              +  + S+E+VI     +  N R
Sbjct: 647 DNKVHGERSVEDVILRFK-KLQNER 670


>gi|255692010|ref|ZP_05415685.1| threonine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260622256|gb|EEX45127.1| threonine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 646

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 86/459 (18%), Positives = 161/459 (35%), Gaps = 62/459 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y + + +   RD      +  ++  M  +   KG+  WLP G      +   +R  Q
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKE--MQLFMFSETVGKGLPMWLPKGTALRLRLQEFLRRIQ 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFR 119
            R    E+  P + +  L+V SG Y  YGK+  +        +     P +     +I++
Sbjct: 286 TRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYK 345

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++ 
Sbjct: 346 NFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVM 404

Query: 179 VSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +F  +  ++   +            IG D + E        E  +  + +    P
Sbjct: 405 DIISIVFRSMNFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACEEKGLP 458

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                            E    +    K        +G  +  G
Sbjct: 459 AK------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLG 488

Query: 292 T---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + 
Sbjct: 489 TIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LT 545

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +++++ I    +   +  E++   L         DD  E+IG +    ++   P  +I
Sbjct: 546 PDQVAILPI---SEKFNEYAEQVKMYLKTHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLI 602

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VG K   + +V ++ +  G +  M  EE     +    N
Sbjct: 603 VGEKEAENGEVSVRRQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|332701961|ref|ZP_08422049.1| threonyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552110|gb|EGJ49154.1| threonyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
          Length = 655

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 148/439 (33%), Gaps = 40/439 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K+   I +   RD      +L L +    +   G+  W P G      +    R+E  R 
Sbjct: 229 KHLERIEEAKKRDHRKLGTQLDLFS-FCDEAGAGMVIWHPKGALIRTIIEDFERKEHLRR 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L   +LW  SG Y+ Y + M    + +++A    P +      I++S ++S
Sbjct: 288 GYHIVQGPQLLKRELWERSGHYEHYRQNMY-FTEIDEQAYGVKPMNCLSHMLIYKSKVRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP   +++ +  R E      G++R R+F   DA+     P+  +     +      
Sbjct: 347 YRDLPLRLFELGVVHRHEKSGVLHGLLRVRQFTQDDAHII-CRPDQLEDEIIGVVHFVRD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G         + P     S      A     +              +        
Sbjct: 406 VMGIFGFNF-EAEISTRPEKSIGSDADWERATNALMKALDKAGLKYGINEGDG------- 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +    +    F    ++ L     + 
Sbjct: 458 -------------AFYGPKIDIVIKDALDRRWQCATIQCD----FTLPERFDLA----YV 496

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H   M     +G++     V+     G   +W   +AP ++ ++N+        
Sbjct: 497 GQDGERHRPVMVHRVILGSLERFIGVLTEHFAGAFPVW---LAPEQVRILNVT---DAQA 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   K+   L + G     D   E++G +   A L   P  ++VG K V    V ++ R 
Sbjct: 551 EYTSKVLDALREQGIRAEADLRNEKLGYKVREAQLEKIPYMLVVGDKEVETGVVNVRTRS 610

Query: 423 TGIREDMSLEEVINYASHR 441
                  +  EV       
Sbjct: 611 GENLGVKTPAEVAAMIHDE 629


>gi|254456038|ref|ZP_05069467.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083040|gb|EDZ60466.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 638

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 153/441 (34%), Gaps = 39/441 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      ++ L      + S G   W   G      +   +R  Q+
Sbjct: 229 LDEYLKRIEEAEKRDHRKLGKEMDLF--HFREESPGSVFWHEKGWALFQKLINYMRSRQD 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E++ P +    LW +SG ++ YG+ M      ++K     P +      +F   +
Sbjct: 287 AAGYREVNTPEILDRQLWEKSGHWEKYGENMYTSETPDEKVFAIKPMNCPGHIQVFNQGL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G++R R F   DA+ F  + +       ++    
Sbjct: 347 KSYRDLPIRIAEFGKVHRYEPSGALHGLLRVRAFTQDDAHIF-CSEDQITSECLEVTNLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I+  LG +++ ++    P       E    A+    +   +          E      
Sbjct: 406 LDIYKDLGFENVILKYADRPEVRVGDDEIWDKAEASLLEAVKASKLEYSINKGEG----- 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A         L D++  + +     +++               A+
Sbjct: 461 ---------------AFYGPKIEFVLRDAIGRDWQCGTLQVDLNLPGRL--------DAS 497

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG K   V +     G++     ++  ++ GK   W   ++P +  +I I    + 
Sbjct: 498 YVDKDGTKKVPVMLHRALFGSLERFIGILIENYAGKFPFW---ISPLQTMVIPI---SEE 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  ++ KVG     D     +  +     L   P+ +I G K V  + V I+ 
Sbjct: 552 FNDYAVEVSKKIKKVGISSAVDLKNNNLNYKIRDHSLAKIPVLLICGKKEVDSNSVTIRR 611

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +  +E+M  E+ +   S  
Sbjct: 612 LDSNKQENMDTEQFLKTFSAL 632


>gi|194017903|ref|ZP_03056511.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010369|gb|EDW19943.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 642

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 169/446 (37%), Gaps = 41/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + Y   I + + RD      +L L   M  + + G+  +LP GQ   + + A  RE +
Sbjct: 229 QLANYLHFIEEASKRDHRKLGKQLSLF--MFSEEAPGMPFYLPKGQIVRNELMAFSREVR 286

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N+    E+S P + + +LW +SG +D Y + M   ++ +  +    P +      +F+++
Sbjct: 287 NKAQYEEVSTPFMMNQELWEKSGHWDHYHENMY-FSEVDHTSFALKPMNCPGHMLMFKNN 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP    +     R E      G+ R R F   DA+ F L  +  +    ++F  
Sbjct: 346 LYSYRDLPIRMAEFGQVHRHEFSGALNGLFRVRTFCQDDAHIF-LREDQIEAEIKRIFQL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P           ++++    V             +     
Sbjct: 405 VDHVYRTFGFEY-SVELSTRPEKALGDDAIWDISESALKNVLDRLKVDYQLNEGDG---- 459

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+L  + + +   ++    F    K+      
Sbjct: 460 ----------------AFYGPKIDFHIKDALQRSHQCATIQLD----FQMPEKF----DL 495

Query: 301 TFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+     +    V + S   G++     ++     G   +W   +AP ++ +I +     
Sbjct: 496 TYINEKNEKVRPVVIHSAIFGSLDRFFGILIEHFAGAFPLW---LAPVQVQIIPVTT--- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V  D C ++  +L K+G  V  D+  E++G +   A +   P   ++G   + D  + I+
Sbjct: 550 VHLDHCLEVQQQLRKIGIRVTIDERDEKLGYKMREAQMQKIPYIAVIGDTEMQDKSLNIR 609

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                  + + +E+  + A  +  N 
Sbjct: 610 QHGEKASKQLFIEDFKHLAVQQIQNR 635


>gi|160914239|ref|ZP_02076460.1| hypothetical protein EUBDOL_00249 [Eubacterium dolichum DSM 3991]
 gi|158433866|gb|EDP12155.1| hypothetical protein EUBDOL_00249 [Eubacterium dolichum DSM 3991]
          Length = 610

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 148/434 (34%), Gaps = 40/434 (9%)

Query: 18  AEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           A+   HK + R     M+ +++ G+  +LP G    + +     EE  +     +  P +
Sbjct: 211 AKKRDHKKLGRELGIFMMSEYAPGMPFFLPNGMILRNILENFWYEEHTKEHYQFIKTPIM 270

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            S +LW  SG +D+Y + M  ++  +D+     P +       +++ + SY++ P    +
Sbjct: 271 MSKELWETSGHWDNYKENMY-ISMVDDREFAIKPMNCPGALLAYKAGLHSYKDFPLRMGE 329

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +    R E      G+ R R F   DA+ F + P+  +     +     RI+  LGL   
Sbjct: 330 LGQVHRHEASGALNGLFRVRTFTQDDAHIF-MRPDQIESEVMSLISFIDRIYASLGLSYR 388

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   + P                E +        +    +             +     
Sbjct: 389 -IELSTRP----------------EEKYIGDLAIWEASEAALAAACKHAGKDYKVNPGDG 431

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYV 312
           A Y    D H +              R  + G I             T+  +DG K   V
Sbjct: 432 AFYGPKLDFHIKDSLG----------REWQCGTI-QLDMNLPERFDLTYVESDGSKARPV 480

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +     G++     ++     G    W   +AP +I ++ +  H +      EK+   L
Sbjct: 481 MLHRVIFGSIERFIGILIEHFAGHFPTW---LAPQQIMVVPV--HYEKHLSYAEKVNEML 535

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G     D   E++G +   A L   P Q+++G     +  V I+         + L+
Sbjct: 536 VQNGFRSKLDARNEKLGYRIREAQLAKIPYQIVLGDGEEENGTVTIRRAQGKDSTTLPLD 595

Query: 433 EVINYASHRFSNNR 446
             I          R
Sbjct: 596 AFIAMLKEEVEEKR 609


>gi|238759923|ref|ZP_04621077.1| Prolyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238701830|gb|EEP94393.1| Prolyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 572

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +  S
Sbjct: 181 YSKIFARMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DDKHYFGINWERDLPLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNYDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYATLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E+I +   +  
Sbjct: 546 YKNRRIGEKQMIKTSEIIEFLLSQIK 571


>gi|269119306|ref|YP_003307483.1| prolyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613184|gb|ACZ07552.1| prolyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 571

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 128/299 (42%), Positives = 180/299 (60%), Gaps = 3/299 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+   +E P++AE+ SHKLMLR  MI + + G+YS+LPLG + L  V  I+REE
Sbjct: 1   MRLSKAFVKTYKEAPKEAEVISHKLMLRASMIKRLASGVYSYLPLGNRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P LQ ADLW ESGR+ +YG E++R+ DR+++    GPTHEEV+TDI R+
Sbjct: 61  MDKSGAQEVFMPVLQPADLWKESGRWIAYGPELMRMKDRHEREFALGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     Y  M  +
Sbjct: 121 EINSYKDLPMNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTTHESLDEEYLNMKTT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGGD++HEF+VLA++GE  V             + T   
Sbjct: 181 YENIFTRCGLDFRAVEADSGSIGGDVTHEFMVLAESGEDDVLYCDSCDYAANKEKATSKA 240

Query: 241 DIISLNSIVEQWTAPYAAT-SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D    +   +            + +   F ++P +K  + + I +   F    KY + +
Sbjct: 241 DFKESDEEAKSIELVETPNTWTIEDVAAFFNIPTSK--TVKAIVLKEAFGENDKYYMAL 297



 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 1/223 (0%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           ++   +        +   +  D   +NS +  +            E             A
Sbjct: 348 KIVMDESVKFMKNFTLGPNKKDHHYINSNISDFKYDMTGDIREAKEGEKCPRCGGTLKIA 407

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS  M A     +GK   ++MG YGIG  R+++A IE ++D  GII
Sbjct: 408 RGIEVGHIFELGTKYSEAMKANVLDENGKQATLKMGCYGIGVSRIMSAAIEQNYDENGII 467

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++AP+++ +I     D+      E +Y  L     DV  DD  E+ G +F  ADL+G
Sbjct: 468 WPVNIAPYEVDVIIPNIKDKDQVRVAEDVYQLLKDHNIDVILDDRDERAGFKFKDADLIG 527

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP+++I G K +++ KVE+K R TG  E + +  +++Y  +  
Sbjct: 528 FPMKIITG-KSIAEGKVEVKDRKTGNTEIVEIGTLLDYVKNHL 569


>gi|99035129|ref|ZP_01314912.1| hypothetical protein Wendoof_01000242 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 536

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 160/446 (35%), Gaps = 44/446 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR++ 
Sbjct: 126 KDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRKKL 185

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L S +LW  SG +D + + M  + +  +K +   P +      IF SH
Sbjct: 186 INNGYFEVKTPILVSKELWERSGHWDKFRENMFIVDESENKKLAIKPMNCPCHVQIFNSH 245

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +     R+E      G+MR R F   DA+ F +  E       K    
Sbjct: 246 TRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM-EEQVNSETIKFCDL 304

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++  LG   I ++    P     + E    A+    +            P E   + 
Sbjct: 305 LKEVYSELGFNEISVKFSDRPDIRAGNDEVWDRAEKALLEAVKEAGLSYKLNPGEGAFYG 364

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G        + LP  +
Sbjct: 365 PKLEF---------------------------VLKDAIGRNWQCGT---LQVDFILPERL 394

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A + GADG K H V +    +G       ++  ++ GK  +W   +AP +++++ I   
Sbjct: 395 GAFYIGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVW---LAPTQLAILTITN- 450

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    +I   L + G  V  D   E+I  +  +      P+  IVG   V+   V 
Sbjct: 451 --EADGYATEISNILKEQGVRVKTDLTNEKISYKIRLHSSNKVPILWIVGKNEVTSKTVS 508

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +++  +  +E  SLE+         +
Sbjct: 509 VRNLGSERQESFSLEKANESLLKSIN 534


>gi|317490123|ref|ZP_07948612.1| prolyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325833438|ref|ZP_08165887.1| proline--tRNA ligase [Eggerthella sp. HGA1]
 gi|316910828|gb|EFV32448.1| prolyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325485362|gb|EGC87831.1| proline--tRNA ligase [Eggerthella sp. HGA1]
          Length = 584

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 109/237 (45%), Positives = 162/237 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEIASH+L+LR G I + + G+Y++LPLG++ L  V  I+REE
Sbjct: 7   MRMSQLYAPTLKEDPADAEIASHRLLLRAGFIRKTASGVYTFLPLGKRVLAKVENIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 67  MDGIGAQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITSLVRN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP + YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF    E  + +Y+ M  +
Sbjct: 127 ELRSYKELPLSLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHADQESLQKTYDDMSEA 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RI  R+G+   P+ A+ G IGG ++ EF+ LA+ GE ++            + + 
Sbjct: 187 YGRICDRMGMDYRPVEADPGQIGGSVTCEFMALAEAGEAELVHCTCGYAANTEAGDC 243



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 114/231 (49%), Gaps = 2/231 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +           +D                  +D+   +  DS P     
Sbjct: 340 EEAYVIAARSLQAVPKWVVGANEDGYHYVGARLGEDFQVDEWADLCIVQPGDSCPSCGLP 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIEV  +F  G KYS  M ATF   DG +    MG YG+G  R +AA++E  +D 
Sbjct: 400 LDGARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMGCYGVGISRTMAAIVEQHNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP +VAP  + +I +   D   + A EK+ + L+K+G +V  DD  E+ G +FA A
Sbjct: 460 NGIMWPLTVAPAHVCVIPLTVGDDEVQPAAEKLASDLAKLGLEVVIDDRKERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G+PLQVIVG + +++ KVEIK R TG R D+ L  + +  +    N +
Sbjct: 520 DLIGWPLQVIVGKRGLAEQKVEIKRRSTGARRDIPLAALTDALAFSQRNAK 570


>gi|171463016|ref|YP_001797129.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|226701317|sp|B1XT38|SYP_POLNS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171192554|gb|ACB43515.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 580

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ FL  L+E P DAE+ SHKLM+R G+I + S G+Y++LPLG K +  V  IIREE
Sbjct: 1   MKASQSFLATLKEAPSDAEVVSHKLMVRAGLIRKLSAGVYNYLPLGLKVIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TD+ R+
Sbjct: 61  MNRAGAIELLMPMIQPAELWQETGRWEKMGPELLRIKDRHDRDFLIQPTSEEVVTDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIKSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFSMKDAYSFDRDTEGLKKSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL+   + A++G IGG  S EF V+ADTGE  +   
Sbjct: 181 YTRIFKRMGLQFRAVTADNGAIGGSGSQEFHVIADTGEDAIVYC 224



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 3/210 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSA 300
             L  +      P     D+ N  + D  P+ K      RGIEVGH+F  GT+YS  M  
Sbjct: 370 HHLTGVNWGRDLPEPLVLDIRNAVVGDPSPDGKGVVDICRGIEVGHVFQLGTRYSEAMGC 429

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQ 359
           T+    GK   + MG YGIG  R++ A IE  HD KGIIWP S+AP ++ +  +     +
Sbjct: 430 TYLDQQGKAQPMVMGCYGIGVTRLLGAAIEQGHDEKGIIWPISMAPCEVVICPMGYEKSE 489

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             + AC++++  L   G DV  DD  E+ G+ FA   L+G P +V++G + + DS+VE K
Sbjct: 490 AVKAACDQLHDGLLAAGVDVILDDRNERPGAMFADWGLIGAPFRVVIGDRGLVDSQVEFK 549

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            R     +++ L ++           +  +
Sbjct: 550 GRTDAESQNIPLTQIKEKVIAAIQTTKQSI 579


>gi|149378080|ref|ZP_01895802.1| prolyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149357649|gb|EDM46149.1| prolyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 577

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH++MLR GMI + + G+YSWLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQMMLRAGMIRKLASGLYSWLPMGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWQESGRWEQYGGELLRMNDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSF +  E    +Y  M  +
Sbjct: 121 ELKSYKELPANFYQIQTKFRDERRPRFGVMRAREFIMKDAYSFHVNAESLNDTYQVMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P+ A+SG IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCAIFDRLGLDYRPVEADSGAIGGSASHEFHVLASSGEDAIVFS 224



 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 3/199 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
             L  +  +     A   D+ +    D  P+ K      RGIEVGHIF  G KYS  M+A
Sbjct: 370 HHLTGVNWERDVALARVEDLRDVVEGDPSPDGKGTLEIRRGIEVGHIFKLGNKYSKAMNA 429

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ- 359
           T    +GK   ++MG YGIG  R+VA+ IE +HD KGIIWPD++APF+++++ +  H   
Sbjct: 430 TVLDENGKSAILEMGCYGIGVSRIVASSIEQNHDDKGIIWPDAIAPFEVAIVTLNGHKSP 489

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               A EK+Y +L + G DV  DD  E+ G +FA  +L+G P + +V  + ++   +E K
Sbjct: 490 AVMAAGEKLYEQLRQAGFDVLLDDRNERPGVKFADMELIGIPHRFVVSERGLAAETLEYK 549

Query: 420 HRLTGIREDMSLEEVINYA 438
            R    ++D+ L E + + 
Sbjct: 550 GRRDEDKQDIPLAEALPFL 568


>gi|260583173|ref|ZP_05850953.1| prolyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260093791|gb|EEW77699.1| prolyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 572

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|17547535|ref|NP_520937.1| prolyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|81849506|sp|Q8XVL4|SYP_RALSO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|17429839|emb|CAD16523.1| probable prolyl-trna synthetase protein [Ralstonia solanacearum
           GMI1000]
          Length = 574

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D  G EM+R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNASGAVEVLMPVVQPAELWQETGRWDKMGDEMMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYEKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +  S
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYS 224



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 7/200 (3%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEV 284
             DF + +   DF        +      P A   D+ N    D  P+ K      RGIEV
Sbjct: 358 MSDFVVGANEEDFH----YTGVNWGRDLPEAEVYDLRNVVEGDPSPDGKGTLAICRGIEV 413

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GT+YS  MSATF   +GK   + MG YGIG  R++ A IE ++D +GIIWP S+
Sbjct: 414 GHVFMLGTRYSESMSATFLDENGKTQPMMMGCYGIGITRILGAAIEQNYDARGIIWPVSI 473

Query: 345 APFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF++ +  +     +  R   ++++A L+  G DV  DD GE+ G+ FA  +L+G P +
Sbjct: 474 APFEVVICPVGYDRSEAVRAEADRLHAELAAAGIDVILDDRGERPGAMFADWELIGVPFR 533

Query: 404 VIVGSKFVSDSKVEIKHRLT 423
           V+VG + + D K+E++ R  
Sbjct: 534 VVVGERGLKDGKLELQGRRD 553


>gi|85705178|ref|ZP_01036278.1| threonyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85670500|gb|EAQ25361.1| threonyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 648

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 154/447 (34%), Gaps = 49/447 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 KDYLTFLEE----AERRDHRKLGREMDLFHMQEEAPGQVFWHPNGWTVYTTLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG ++ Y + M  +    + A         P +      
Sbjct: 290 RRGGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF-CTEDQIESETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       I+  LG  +  +   + P     S E    A++       +        P E
Sbjct: 409 RFIAFLSGIYADLGFPNFEVLFSTRPDVRAGSDEVWDKAESALLSATRAAGIEPKVNPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++    +     ++    F    +  
Sbjct: 469 GAFYGPKLEFTLT--------------------DAIGRKWQCGTHQVD----FVLPER-- 502

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G DG K   V +    +G+      ++   H G+   W   +AP ++ + +I
Sbjct: 503 --LDANYIGTDGAKHRPVMLHRAVLGSFERFIGILIEEHSGRLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   K+   L+ +      D   E+I  +     +   P+ +  G + V D 
Sbjct: 558 VSD---ADDCVTKVARNLTDLNIRAEADTRNEKINYKVREHSVGKVPVILACGPREVEDG 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++         + L++V    +  
Sbjct: 615 TVSLRRLGEKDSRIVPLDQVAAELARE 641


>gi|239618448|ref|YP_002941770.1| threonyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|259516548|sp|C5CI64|SYT_KOSOT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239507279|gb|ACR80766.1| threonyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 648

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 154/449 (34%), Gaps = 43/449 (9%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +++E   RD      +L L +   ++++ G+  + P G   L+ +    R
Sbjct: 227 KKSELEAYLKMMEEAKKRDHRKIGPQLGLFS-FSYEYAPGMPIYHPKGTIVLNELMKFSR 285

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E  ++ G  E+  P + +  LW  SG +D Y   M    +++++     P +      I+
Sbjct: 286 EVHSKHGYQEVMTPQIMNDVLWHRSGHWDHYRDNMY-FTEKDEQQYAIKPMNCPGHILIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S   SYR+LP   ++     R E      G++R R F+  DA+ F  T E  K     +
Sbjct: 345 KSRAMSYRDLPLKLFEFGKVHRYERSGVLHGLLRVRGFIQDDAHIF-CTREQLKEQLKDV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+   G +       + P       E   LA         S          +  
Sbjct: 404 IRFVDMIYTPFGFEYR-ADLCTRPEDFMGDVEIWDLATEALKDAIESIGLEYKVNEGDG- 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + DS+    + +   ++              
Sbjct: 462 -------------------AFYGPKIDFHVTDSIGREWQCATIQLDFMMPER-------- 494

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+ G D K+   V +     G++     ++   + G    W   +AP ++  I I  
Sbjct: 495 FELTYVGPDNKEYRPVMIHRAIYGSLDRFFGILIEHYAGAFPTW---LAPVQVVAIPI-- 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L+  G  V  D+  +    +   A L   P  +I+G K      +
Sbjct: 550 -SDKHVDYAREVADALAAEGVRVDVDEKQKSTNYKIREAQLNKIPYMLILGDKEKESETI 608

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       M L E         SN 
Sbjct: 609 TVRLRTGKNIYGMKLAEFSAKLKEEISNR 637


>gi|81429010|ref|YP_396010.1| threonyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123742216|sp|Q38VT0|SYT_LACSS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78610652|emb|CAI55703.1| Threonyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 656

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 164/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  WLP G     ++   I +++   G   + 
Sbjct: 238 EAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPNGATIRRSIERYIIDKEVANGYEHVY 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+ +SG +D Y ++M    D  D  M+   P +      +++ H +SYR LP
Sbjct: 296 TPILANLDLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHPRSYRELP 355

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F + P+  +  +  +    + ++   
Sbjct: 356 IRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIQDEFKSILGLMIDVYADF 414

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     +      D + L+ +
Sbjct: 415 NINDYTFRLSYR--------------DPANTEKYFDDDEMWNKAQAMLKGAMDDLGLDYV 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + +   ++   + +S   ++    F    ++       + G DG+
Sbjct: 461 EA--EGEAAFYGPKLDVQTKTAMGNEETLSTIQLD----FMLPERF----DLHYVGEDGE 510

Query: 309 DHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ +      A +   + G    W   +AP +  +I +K  + +  D  + 
Sbjct: 511 MHRPVMIHRGLVSTMERFTAYLTEIYKGAFPTW---LAPTQAVIIPVK--NDLHYDYAKN 565

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   + K G  V  DD  E++G +   A     P  ++VG + ++ + V ++        
Sbjct: 566 IKDEMIKRGLRVRIDDRNEKMGYKIREAQTSKIPYTLVVGDQELAQATVSVRKYGEENAV 625

Query: 428 DMSLEEVINYASHRFSNN 445
           + + +  IN       N 
Sbjct: 626 EEASDMFINAIVAEVGNY 643


>gi|240947869|ref|ZP_04752309.1| prolyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240297831|gb|EER48267.1| prolyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 571

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  I+REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVIFS 224



 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +       T D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVALPETFDLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEKVQAFAEELYKTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ E+++ + +    
Sbjct: 544 EYKNRRTGEKQMIAKEQLLAFLAENVK 570


>gi|319935875|ref|ZP_08010301.1| threonyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809142|gb|EFW05623.1| threonyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 581

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 166/444 (37%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD +    +L L   M+ +++ G+  +LP G    + +     +E  +
Sbjct: 173 QAYLDFLEEAKKRDHKKLGRELDLF--MMSEYAPGMPFFLPHGMLLRNELEKFWYDEHTK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + S +LW  SG + +Y + M   +  +++     P +      ++++ + 
Sbjct: 231 EGYEFIKTPIMMSKELWEVSGHWYNYKENMYT-SLVDEREFAIKPMNCPGSLLVYKNGLH 289

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    ++    R E      G+ R R F   DA+ F +TP+  +    ++     
Sbjct: 290 SYKDLPIRMGELGQVHRHEASGALNGLFRVRTFTQDDAHIF-MTPDQIESEVVRLIAFID 348

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R++  LGL    +   + P                E +     +  +    +        
Sbjct: 349 RVYSMLGLSY-DIELSTRP----------------EEKYIGELEIWEKSEAALAAACQAA 391

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    D H +              R  + G I             T+
Sbjct: 392 GKDYKINPGDGAFYGPKLDFHVKDSLG----------RVWQCGTI-QLDMNLPERFDLTY 440

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +G+    V +     G++     ++     G   +W   +AP ++ +I +K  ++  
Sbjct: 441 VDQNGEKVRPVMVHRVIFGSIERFIGILIEHFAGAFPLW---LAPAQVKVIPVK--NEYH 495

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I+  L   G  V  DD  E++G +   A +   P Q+++G K   +  V  +  
Sbjct: 496 LDYSQEIFKLLEAKGIRVEIDDREEKLGYRIREAQMKKIPYQLVLGDKERDERTVTYRQY 555

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               +  +SL+E I     +  + 
Sbjct: 556 GEQKQTTVSLDEFICMILKQIEDK 579


>gi|310815279|ref|YP_003963243.1| threonyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754014|gb|ADO41943.1| threonyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 648

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 156/442 (35%), Gaps = 49/442 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  + +L+E    A    H+ + R      + + + G   W P G      +   +R  Q
Sbjct: 234 KAHMTMLEE----AAKRDHRRLGREMDLFHMQEEAPGQVFWHPNGWTVYTALQDYMRRRQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            + G +E++ P + +  LW +SG +++Y   M  +    + A         P +      
Sbjct: 290 RKDGYVEVNTPQVVNRVLWEKSGHWENYRDNMFIVEVDEEGAKEKVVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR LP    +     R E      G+MR R F   D + F  T +  +    
Sbjct: 350 IFNHGLKSYRELPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIF-CTEDQIESETK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       ++  LG +S  ++  + P     + E    A+       C K   D+ +   
Sbjct: 409 KFIEFLASVYADLGFESWRVKLSTRPEKRIGTEESWDHAEQSLGN-ACRKAGYDYELQEG 467

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F        +                    D++  + +     ++            
Sbjct: 468 EGAFYGPKLEFVLT-------------------DAIGRDWQCGTLQVDPNLPERL----- 503

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A + G DG K   + +    +G+      ++  +  GK   W   +AP ++ + +I
Sbjct: 504 ---DANYIGQDGAKHRPIMLHRACLGSFERFVGILIENFAGKLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++ A LS  G     D   E+I  +     L   PL + +G++ V + 
Sbjct: 558 VSD---ADDYVHEVVAALSAAGVRAEADTRNEKINYKVREHSLGKVPLILAIGAREVEER 614

Query: 415 KVEIKHRLTGIREDMSLEEVIN 436
            V ++         MSL+ ++ 
Sbjct: 615 TVTVRRLGENQTATMSLDAILA 636


>gi|157825427|ref|YP_001493147.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|166225491|sp|A8GML4|SYT_RICAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157799385|gb|ABV74639.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 635

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 157/444 (35%), Gaps = 44/444 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +   Y L + +   RD      +L L      + ++G+  W   G    + +   IR++ 
Sbjct: 227 QLDNYLLMLEEAEKRDHRKLGKELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKI 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P L    LW  SG ++ +  +M  L D +DK +   P +      IF+  
Sbjct: 285 RKNGYTEVKTPVLVDKSLWEASGHWEKFRDDMFAL-DTDDKTLALKPMNCPCHVQIFKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP    +  L  R+E      G+MR R  +  DA+ F  T E            
Sbjct: 344 IKSYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIF-CTEEQITDETVSFCKL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G  +I ++    P     S+     A+    +      F     P E   + 
Sbjct: 403 LTEVYKDFGFTNISVKFSDRPEVRAGSNGTWDKAENALKEAVEKAGFTYTLNPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                                    R  + G        + LP  +
Sbjct: 463 PKLEFVLTD---------------------------AIGRQWQCGT---LQMDFVLPERL 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++  A G K   V +    +G++     ++   + G   +W   +AP ++++  I + 
Sbjct: 493 DASYIAASGEKKRPVMLHRAILGSLERFIGILIEEYAGCFPLW---LAPIQVAIATITSD 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++   L   G     +   ++I  +         P+  ++G +   + +V 
Sbjct: 550 ---LNDYALEVQKALIDNGVRTDINISPDKINYKIREFYNQKIPMIAVIGKQEQENKQVT 606

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+   T  +E +SLE++I      
Sbjct: 607 IRRLRTTEQEVLSLEQLITLIKEE 630


>gi|330819285|ref|YP_004348147.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327371280|gb|AEA62635.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 682

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 143/434 (32%), Gaps = 40/434 (9%)

Query: 13  ENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E    AE   H+ + R        + + G   W P G      + A +R  Q     +E+
Sbjct: 252 ERLEQAERRDHRRLGRELDLFHFQEDAPGAVFWHPRGWTVFRELIAYMRRRQEEAAYVEV 311

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           + P +    LW  SG + +Y   M   A  + +++   P +      ++R  +KSYR+LP
Sbjct: 312 NSPDVMDRSLWEISGHWLNYRDHMFTTATEDGRSLALKPMNCPGSVLLYRHGLKSYRDLP 371

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +     R E      G++R R F   DA+ +  TP         +    L I+ + 
Sbjct: 372 IRMGEFGKVHRYEPSGALHGLLRVRHFTQDDAHIY-CTPAQMDQECRAVVALVLDIYRQF 430

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G + + ++  + P             +        +        P E             
Sbjct: 431 GFEEVRIKLSTRPANRMGDEATWDRLEGALVNALDAMGLDYRLNPGEG------------ 478

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A         L D++  + +     +++     FG          +   DG+
Sbjct: 479 --------AFYGPKLEFVLRDAIGRDWQCGTLQVDMNLPERFG--------IEYVDEDGQ 522

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               V +     G++     ++   H GK    P  +AP +  +++I    +   D    
Sbjct: 523 RKRPVMLHRALFGSLERFIGILIEHHAGK---LPPWLAPVQAMVLSI---SEEHADYARN 576

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L+  G     D   E+IG +     L   P  ++ G++      + I+ R      
Sbjct: 577 VAQWLAASGLRAEADLRREKIGYKIREQTLQRIPFLLVAGTRERETGSIAIRSRGGLDLG 636

Query: 428 DMSLEEVINYASHR 441
            + L + +      
Sbjct: 637 TLPLAQAVALLVDE 650


>gi|255262353|ref|ZP_05341695.1| threonyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255104688|gb|EET47362.1| threonyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 649

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 148/445 (33%), Gaps = 59/445 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 235 KKHLHMLEE----AAKRDHRKLGREMDLFHMQEEAPGQVFWHPNGWTVYTELQDYMRRKQ 290

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G +E++ P +    LW  SG ++ Y + M  +    + A         P +      
Sbjct: 291 RAGGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQ 350

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 351 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIF-CREDQVQEETA 409

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   I+  LG +   ++    P     S E    A+        +        P E
Sbjct: 410 VYIEFLSTIYKDLGFEKFRVKYSDRPDTRAGSDEVWDKAEQALLTATRNAGIEPEMNPGE 469

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--- 292
              +   +                                        +G  +  GT   
Sbjct: 470 GAFYGPKLEFVLTDA---------------------------------IGRDWQCGTHQV 496

Query: 293 KYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            + LP  + AT+ G D GK   V +    +G+      ++   H GK   W   +AP ++
Sbjct: 497 DFVLPERLDATYIGTDGGKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQV 553

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  I +      D   +I   L   G     D   E+I  +     L   P+ + +G +
Sbjct: 554 VVTTIVSD---ADDFAAEIVETLRSKGVRAEADTRNEKINYKVREHSLAKVPVILAIGQR 610

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEV 434
            V +  V ++       + ++ +EV
Sbjct: 611 EVDERTVSVRRLGEKQSKVIAFDEV 635


>gi|254419068|ref|ZP_05032792.1| threonyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196185245|gb|EDX80221.1| threonyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 642

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 148/442 (33%), Gaps = 48/442 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +      + +  +G+  W P G      + A +R   + 
Sbjct: 232 YLQRLEE----AEKRDHRKVGKAMELFHMQEEGRGMVFWHPKGWILWRVLEAYMRRRLDA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +     W +SG +D Y   M        + +   P +      IF    +
Sbjct: 288 AGYVEVKTPQVLDRKFWEQSGHWDKYRPNMFVCETVEGETLSLKPMNCPGHVQIFDQGQR 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +     R E      G+MR R F   DA+ F    +       +      
Sbjct: 348 SYRELPLRMAEFGACHRYEPSGSLHGLMRVRGFTQDDAHIF-CREDQIVEETAEFIKLAR 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG+++  +   + P     S EF   A+    +   +          +   +   
Sbjct: 407 SVHADLGMETAYISLGTRPENRAGSDEFWDKAEALMAEAARAAGTEPVVTEGDGAFYAPK 466

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R    G I      Y LP  + A
Sbjct: 467 LDF---------------------------IVKDAIGREWTCGTI---QLDYVLPERLDA 496

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   DG+ H  V +    +G+      ++  ++ G   +W   +AP +  +  I +   
Sbjct: 497 TYIAEDGQKHRPVMLHRAILGSFERFIGIMIENYAGAFPLW---LAPTQAVVATITSD-- 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D    + AR    G     D   E++G +     +   P+  +VG +      V I+
Sbjct: 552 -ADDYARDVMARFKAAGLRTEIDLRNEKVGYKVREHSVGKVPVIAVVGRQEAEQGLVAIR 610

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              +  +  +++EE I   +  
Sbjct: 611 RLGSQAQTVVTVEEAIRILTDE 632


>gi|332297469|ref|YP_004439391.1| threonyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332180572|gb|AEE16260.1| threonyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 583

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 151/452 (33%), Gaps = 53/452 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K ++ +L     +AE   H+ + +      I + S G   W P G      +   +R + 
Sbjct: 170 KAYVDML----AEAERRDHRKIGKEMDLFHIDEDSPGQIFWHPNGWTIYRILEDYVRTKI 225

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  
Sbjct: 226 KADGYVEVKTPFVMPQSLWERSGHWAKYKENMF-ITESEKRIFALKPMNCPGHIEIFKQR 284

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           I+SY++LP    +     R+E      G+MR R F+  DA+ F  T         K    
Sbjct: 285 IRSYKDLPLRMAEFGSCTRNEASGALHGIMRVRGFVQDDAHIF-CTEAQIPSEVAKFCHL 343

Query: 181 YLRIFHRLGLKS--IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              ++   G     I ++  + P            A+                 P E   
Sbjct: 344 LKDMYKDFGFTDDKILVKFSTRPEKRVGDDATWDRAEGALADACKQAGLAYEIQPGEGAF 403

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +    +                               R  + G I      Y LP 
Sbjct: 404 YGPKLEFTLVD---------------------------ALGREWQCGTI---QVDYQLPS 433

Query: 298 ---MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
              ++A + G D  K H V +    +G++     ++  +  G    W       +  +I 
Sbjct: 434 AERLNAEYIGDDNAKHHPVMLHRAVLGSLERFIGILIENFAGAFPTWLHY---QQTVVIP 490

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +           EK+ A L   G     D   +++ ++  +A     P  ++VG K  +D
Sbjct: 491 VAP---AFNGYAEKVQAALKAAGIRSDCDLGNDRMNAKIRLAQTQKIPYMLVVGEKEAAD 547

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V ++ R    ++ MS+ +   Y      N+
Sbjct: 548 GTVAVRFRDGRPQQIMSVGDFTAYVRETVENH 579


>gi|270002317|gb|EEZ98764.1| hypothetical protein TcasGA2_TC001328 [Tribolium castaneum]
          Length = 351

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 36/362 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASH-------KLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R S+ F P+    P++AE+  H       +LML  G+I Q S G + +LPLG K+L+ + 
Sbjct: 8   RLSRLFQPVS-VVPKNAEVKRHDITSKSQRLMLELGIIRQASPGCFHFLPLGVKSLEKLT 66

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++ EE  + G  ++  PTL +A LW ++GR ++   E+ ++ DR+D++ I  PTHEE  
Sbjct: 67  RLVDEEMKKIGGQKIIFPTLTNAKLWEKTGRLETVSSELFQIKDRHDQSYILSPTHEEAA 126

Query: 115 TDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +++  S    SY++LP   YQI  K+RDE++PRFG+MR ++FLMKD YSFD   E +KH+
Sbjct: 127 SNLLASLAPISYKHLPLKLYQITSKYRDEMKPRFGLMRGKQFLMKDMYSFDTDLETAKHT 186

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+++  SY RIF R+G+  + +   SG +GG+LSHE+   AD GE ++            
Sbjct: 187 YDEICKSYDRIFRRIGIDFVKVVGCSGHMGGELSHEYHYKADVGEDKILTCN-------- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                 Y+A ++V  E+   +          GIEVGH F  G K
Sbjct: 239 -------------------KCNYSANTEVSGEEKCPNCGNTSVKIHLGIEVGHTFLLGEK 279

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P++ATF    GK   +QMGSYG+G  R++AAVIE     + I WP  ++P+ + ++ 
Sbjct: 280 YSKPLNATFLNNHGKPDVLQMGSYGLGLSRILAAVIEVMSSEQEIRWPQILSPYSVIILP 339

Query: 354 IK 355
            K
Sbjct: 340 PK 341


>gi|70726243|ref|YP_253157.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68446967|dbj|BAE04551.1| threonyl-tRNA synthetase 1 [Staphylococcus haemolyticus JCSC1435]
          Length = 645

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 156/415 (37%), Gaps = 33/415 (7%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G+  WLP G      +   I +++   G   +  P L + +L+  SG +D Y  +M 
Sbjct: 259 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELYKTSGHWDHYRDDMF 318

Query: 95  RLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++ + M+  P +      ++ +   SYR LP    ++    R E      G+ R 
Sbjct: 319 PPMKLDETEEMVLRPMNCPHHMMVYNNRPHSYRELPIRIAELGTMHRYEASGAVSGLQRV 378

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R   + D++ F + P+  K  + ++      ++   G +    R                
Sbjct: 379 RGMTLNDSHIF-VRPDQIKDEFKRVVNMIQEVYSDFGFEDYTFRLSYR------------ 425

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  + + +   D M     +   +  D + L  +     A  A      + ++  ++ 
Sbjct: 426 --DPEDKEKYMDDDEMWNKAETMLKEAVDEMGLPYVEAIGEA--AFYGPKLDVQVKTAMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM-RVVAAVIES 331
           + + +S   I+    F    ++      T+ G+DG++H   +   G+ +      A +  
Sbjct: 482 KEETLSTAQID----FLLPERF----ELTYIGSDGENHRPVVIHRGVVSTMERFVAFLTE 533

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              G    W   +AP ++ +I +     +  D    +   L   G  V  DD  E++G +
Sbjct: 534 ETKGAFPTW---LAPKQVEIIPVNV--DLHYDYARNLQDELKSQGVRVEIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              A +   P Q++VG K V +++V ++   +  +E +  +E I          +
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRKYGSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|329577159|gb|EGG58629.1| threonine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 412

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 160/439 (36%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L   +  +   G+  WLP G      +   I +++   G   + 
Sbjct: 3   EEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQHVY 61

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLP 129
            P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I SYR LP
Sbjct: 62  TPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELP 121

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F + P+  K  + +     + ++   
Sbjct: 122 IRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELMVAVYADF 180

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T  +   D M     +      D + L+  
Sbjct: 181 NITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMDELELD-- 224

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + ++  +L   + +S   ++    F    ++      T+ G DG+
Sbjct: 225 YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLTYVGEDGE 276

Query: 309 D--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           +    V +    +  M    A +   + G    W   +AP + ++I +    +   +   
Sbjct: 277 NTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--EAHSEYAY 331

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   +   
Sbjct: 332 EIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKET 391

Query: 427 EDMSLEEVINYASHRFSNN 445
               L   I+  +    N 
Sbjct: 392 SVEDLSIFIDSMAAEVHNY 410


>gi|325473136|gb|EGC76332.1| threonyl-tRNA synthetase [Treponema denticola F0402]
          Length = 585

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 162/451 (35%), Gaps = 54/451 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + +      I + + G   W P G      +   +R+  
Sbjct: 172 KEYLAMLEE----AEKRDHRKVGKAMNLFHIDEENPGQVFWHPKGWTLYLTIQNYVRKRI 227

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  
Sbjct: 228 KEDGYLEVHTPFVMPRSLWERSGHWAKYKENMF-ITESEKRLFALKPMNCPGHVEIFKQG 286

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSY++LP    +     R+E      G+MR R F+  DA+ F  T E      +K    
Sbjct: 287 IKSYKDLPLRLAEFGSCTRNEPSGSLHGIMRIRGFVQDDAHIF-CTEEQISSEVSKFCAL 345

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             R++   G     I ++  + P            A+   +               E   
Sbjct: 346 LKRMYADFGFAEDKILVKFSTRPEQRVGDDATWDRAEKALSDACADAGLKYEIAEGEGAF 405

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +    I                               R  + G I      Y LP 
Sbjct: 406 YGPKLEFTLID---------------------------ALGREWQCGTI---QLDYQLPS 435

Query: 298 ---MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
              ++A + G D  K H V +    +G++     ++  +  G   I P  +AP +  ++ 
Sbjct: 436 AERLNAEYIGDDNNKHHPVMLHRAVLGSLERFIGILIENCAG---IMPPWLAPVQAVIVP 492

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        +  +K+   L + G  V  D   +++ ++           Q+IVG   + +
Sbjct: 493 VAP---AFNEYAQKVQKVLDEKGFRVIADIGTDRMNAKIRKHQEEKVIYQLIVGQSEMDN 549

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + V ++ R  G +  M+L+E I++   +  +
Sbjct: 550 NSVAVRMRKGGQK-VMTLDEFISFLKDKVDS 579


>gi|262376731|ref|ZP_06069959.1| prolyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262308441|gb|EEY89576.1| prolyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 572

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G++++ +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MDKVGSLQVYMPVTQPASLWEESGRYVQYGPELLRFNDRHGNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPANFYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQQTYDDMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF RLGL   P++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCKIFTRLGLNFRPVQADTGSIGGSGSHEFHVLASSGEDDIAFS 224



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A +    D+ N    D  P+ K      RGIEVGHIF  G KYS  +     G 
Sbjct: 377 VNWERDAQFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGQKYSEALGCKVLGE 436

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVA+ IE + D KGIIWP ++APF+++++ + AH      +A
Sbjct: 437 DGKPFTVTMGCYGIGVTRVVASAIEQNFDEKGIIWPTAIAPFEVAIVPMNAHKSPRTMEA 496

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R   
Sbjct: 497 AEALYAELQAAGFDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRRDA 556

Query: 425 IREDMSLEEVINYASH 440
              ++S EE++   + 
Sbjct: 557 ESVNISKEELLAKIAK 572


>gi|220904224|ref|YP_002479536.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254782896|sp|B8IZD1|SYP_DESDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219868523|gb|ACL48858.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 574

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P DAE+ SHKL+LR GM+ + + G+Y +LPLG + ++ +   +REE
Sbjct: 1   MRFSSCYIPTLKESPADAEVISHKLLLRAGMVRRLTSGLYIYLPLGLRVINKIARTVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+ +P +Q  DLW E+GR++ YGKE+LR  DRN++    GPTHEEV+TD+ R 
Sbjct: 61  MEKAGFRELLMPMVQPGDLWKETGRWEHYGKELLRFKDRNEREYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFD T EG++ SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQVQTKFRDEIRPRFGLMRGREFMMKDGYSFDATAEGAEESYKIMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF RLGL+   + A++G IGG+ SHEF+VLADTGE  +    D     
Sbjct: 181 YMSIFSRLGLRFRAVEADTGSIGGNFSHEFMVLADTGEDTIAFCHDCEYAA 231



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 99/178 (55%), Gaps = 2/178 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+      D  P    +    RGIEVGHIF  G KYS  M A F   +GK+  + MG 
Sbjct: 379 WADLRAITADDQCPRCGGRMELTRGIEVGHIFMLGLKYSEAMHAVFLDENGKERTMIMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  RV AA IE +HD  GI++P  VAPF+  L+N+    +      E+IYA L  +G
Sbjct: 439 YGIGVSRVAAAAIEQNHDEHGIVFPPPVAPFECVLLNLDPRSEEVNAKVEEIYALLQGMG 498

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +V  DD  E+ G +F  ADLLG P+Q++VG K +    VE K R TG + ++S   +
Sbjct: 499 IEVLLDDREERPGVKFKDADLLGIPMQLVVGGKGLGRGIVECKDRRTGEKGELSAASL 556


>gi|259418221|ref|ZP_05742139.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259345616|gb|EEW57460.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 648

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 156/446 (34%), Gaps = 49/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGM---IHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G+  W P G +    +   +R  Q
Sbjct: 234 KAHLTMLEE----AAKRDHRKLGREMHLFHMQEEAPGMVFWHPNGWRIYTTLQDYMRRMQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
           ++ G +E++ P + +  LW  SG +D+Y + M  +    D A         P +      
Sbjct: 290 DKGGYVEVNTPQVVNRKLWEASGHWDNYQENMFIVEVDEDHAREKAVNALKPMNCPCHIQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   D + F  T E  +    
Sbjct: 350 VFNQGLKSYRDLPLRMAEFGSCNRYEPSGAMHGIMRVRGFTQDDGHIF-CTEEQVEAETK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +      +++  LG +   ++  + P     + E    A+        +  +       E
Sbjct: 409 EFVSFLAKVYQDLGFEKWRVKLSTRPEKRVGTEESWDQAEAALAAGIQAAGYEYELQEGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++  + +     I+            
Sbjct: 469 GAFYGPKLEFVLT--------------------DAIGRDWQCGTLQIDPNLPERL----- 503

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               AT+ G DG  H  + +    +G+      ++   H GK   W   +AP ++ + +I
Sbjct: 504 ---DATYIGQDGDKHRPLMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++ A L   G     D   E+I  +     +   P+ + VG + V + 
Sbjct: 558 TS---EADDYVNEVVATLRAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEER 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
            V ++       +  SL  V    + 
Sbjct: 615 TVSVRRLGEKQTKVESLTNVTEELAK 640


>gi|148826625|ref|YP_001291378.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166980127|sp|A5UDZ4|SYP_HAEIE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148716785|gb|ABQ98995.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 572

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDRSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSESVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R +G +E +S +++++  + +  N
Sbjct: 544 EYKNRRSGEKEMISKDKLLSVLNEKLGN 571


>gi|241664234|ref|YP_002982594.1| prolyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240866261|gb|ACS63922.1| prolyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 574

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKLSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYC 224



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 127/265 (47%), Gaps = 19/265 (7%)

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    G  + P     GPIG  L     V+AD        +    DF + +   D+   
Sbjct: 326 EILRAFG--TRPGYL--GPIGTKLP--VKVVADRT------AAAMSDFVVGANEEDYH-- 371

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSA 300
                +      P     D+ N    D  P+ K      RGIEVGH+F  GT+YS  M+A
Sbjct: 372 --FTGVNWGRDLPEPEVYDLRNVVAGDPSPDGKGTLAVCRGIEVGHVFMLGTRYSEAMNA 429

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
           TF   +GK   + MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +      
Sbjct: 430 TFLDENGKTQPMVMGCYGIGITRILGAAIEQNYDARGIIWPASIAPFQVVICPVGYDRSN 489

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             R+  ++++A L   G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E +
Sbjct: 490 AVREEADRLHAELVAAGIDVMLDDRGERPGAMFADWELIGVPFRVVVGDRGLKEGKLEFQ 549

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R       ++  +V+     R + 
Sbjct: 550 GRRDEAATAVAPADVLATLKARLAQ 574


>gi|87121381|ref|ZP_01077270.1| prolyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86163224|gb|EAQ64500.1| prolyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 575

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L+  P DA + SHKLM+R GMI Q SKG+Y+WLP G K    V  I+REE
Sbjct: 1   MRASNYLFSTLRNPPTDAVVTSHKLMMRAGMIRQVSKGLYTWLPTGLKVFRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q  +LW ESGR+  YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MQRAGALEIIMPGVQPKELWEESGRWQEYGPELLRIKDRHERDYCLGPTHEEVVTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +PE  + +Y+ M  +
Sbjct: 121 EISSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFMMKDAYSFHSSPESLQTTYDVMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y ++F R+GL   P+RA++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCKVFDRVGLNYRPVRADTGSIGGAFSHEFHVLAESGEDDIAFSD 225



 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPM 298
           D   +  +  +        +D+ N    D  P+ K      RGIEVGHIF  G KY+  +
Sbjct: 370 DDYHVTGVNWERDFGEVEVADIRNVVAGDPSPDGKGVIEIKRGIEVGHIFQLGQKYADAL 429

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           +A     +GK   + MG YGIG  RVVAA IE + D KGI+WPD++APF++S++ +K   
Sbjct: 430 NANVLDENGKAQTMWMGCYGIGVSRVVAAAIEQNFDDKGILWPDAIAPFQVSIVAMKYEK 489

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  R+  ++IYA L   G DV  DD     G +FA A+LLG P +V++  K +    +E
Sbjct: 490 SEAVREQADRIYAELQAAGVDVMLDDRKASPGVKFADAELLGIPHRVVISDKGLEKGTIE 549

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            KHR TG  +D+SL+ ++     R +
Sbjct: 550 YKHRRTGDNDDLSLDSLVKTLISRLN 575


>gi|325293128|ref|YP_004278992.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060981|gb|ADY64672.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 667

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 151/453 (33%), Gaps = 54/453 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + A +R     
Sbjct: 234 YLHVL----AEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRMFQTLTAYMRRRLAN 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
           T   E++ P +    LW  SG +  Y + M  +            D + +     P +  
Sbjct: 290 T-YQEVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTHPDDEDADQRVFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR +P    +     R E      G+MR R F   DA+ F  T E   
Sbjct: 349 GHVQIFKHGLKSYREMPVRLAEFGNVHRYEASGALHGLMRVRGFTQDDAHVF-CTEEQMA 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               ++    L ++   G   I ++  + P     S +    A++   +V  +       
Sbjct: 408 AECLRINDLILSVYEDFGFSEIVVKLSTRPEKRVGSDDLWDRAESVMMEVLKT------- 460

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                    +  S   I         A      E         K    R  + G      
Sbjct: 461 --------IEEQSGGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---Q 503

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +   +  K   V +     G+M     ++  +  G   +W    AP +
Sbjct: 504 VDFNLPERFGAFYIDQNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPLQ 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +      D   ++   L + G  V  D   E+I  +     +   P+ ++ G 
Sbjct: 561 VVVATITSD---ADDYGREVAEALREAGMAVETDFRNEKINYKVREHSVTKVPVIIVCGR 617

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           K   +  V I+   +  +  MSLE+ I      
Sbjct: 618 KEAEERTVNIRRLGSQNQTPMSLEDAITSLVEE 650


>gi|288928013|ref|ZP_06421860.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330847|gb|EFC69431.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 654

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 162/449 (36%), Gaps = 41/449 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R+ 
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQNMLRKI 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F
Sbjct: 287 QKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    +R E      G+ R R F   DA+ F   PE  K+ + ++
Sbjct: 347 AWKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIF-CRPEQVKNEFLRV 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F          +                  D   T  +      D        
Sbjct: 406 MDIIQAVFKIFHFDDFEAQISLR--------------DPKNTTKYIGS---DEVWEESEQ 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D      +  +     AA      +         K    R  ++G I      Y+LP
Sbjct: 449 AIIDACKEKGLDAKIAYGEAAFYGPKLDF------MIKDAIGRRWQLGTI---QVDYNLP 499

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   D  K   V +     G+M    AV+     G   +W   + P +++++ I
Sbjct: 500 ERFKLEYTAEDNTKKTPVMVHRAPFGSMERFTAVLIEHTAGHFPLW---LIPDQVAILPI 556

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  +++      VG     D   E+IG +    ++   P  V+VG K  ++ 
Sbjct: 557 ---SEKYNDYAQRVAKYFDSVGVRATLDVRNEKIGRKIRDNEIKRVPYMVVVGEKEAAEG 613

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V ++ +  G +  MS+EE     +   +
Sbjct: 614 LVSMRKQGGGEQATMSMEEFAKRINDEVA 642


>gi|223041831|ref|ZP_03612021.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
 gi|223017400|gb|EEF15821.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 317

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224


>gi|332830447|gb|EGK03075.1| threonyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 650

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 159/452 (35%), Gaps = 48/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      +L L         KG+  WLP G +    +   +++ Q 
Sbjct: 228 LDEYLIMLEEAKKRDHRKIGKELELFA-FSENVGKGLPLWLPRGTQLRLKLEDFLKKIQR 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           +    ++  P + S  L+V SG Y+ YGK+  +        +  +  P +     +I++ 
Sbjct: 287 KFDYQQVMTPHIGSKILYVTSGHYEKYGKDSFQPIHTPEEGEEFLLKPMNCPHHCEIYKI 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +    +R E      G+ R R F   DA+ F  TPE  K  + K+  
Sbjct: 347 IPRSYKDLPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQLKAEFLKVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               IF  L  ++   +     P   +         +  E  +  + +    P       
Sbjct: 406 IVFIIFKALDFENFEAQISLRDPENREKYIGSDENWEKAERAIIEACEEKGLPAK----- 460

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
                                     E    +    K        +G  +  GT    Y+
Sbjct: 461 -------------------------VELGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYN 495

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + GAD + H  V +     G+M    AV+     GK  +W   +AP ++ ++
Sbjct: 496 LPERFELEYTGADNQKHRPVMIHRAPFGSMERFIAVLIEHTAGKFPLW---LAPDQVVIL 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +   D   ++ +   + G     DD  E+IG +    +L   P  +IVG K   
Sbjct: 553 PI---SEKFNDYAHRVNSYFKQQGISSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKEAE 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +V ++ +  G +  M         +     
Sbjct: 610 TEEVSVRKQGEGDKGSMKFTNFAAQLNEEVEK 641


>gi|218885229|ref|YP_002434550.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226699140|sp|B8DNM5|SYP_DESVM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218756183|gb|ACL07082.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 575

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/231 (54%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P DAE+ SHKL+ R GMI + + GIY ++PLG KA++   AI+REE
Sbjct: 1   MRWSNCYIPTLKEAPADAEVVSHKLLTRAGMIRKLTSGIYIYMPLGLKAIEKTAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q ADLW ESGR++ YGKE+LR  DRN +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALELSMPMVQPADLWQESGRWEFYGKELLRFQDRNGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDRDEAGADKSYWAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F RLGL+   + A+SG IGG  SHEF+VLADTGE  +          
Sbjct: 181 YQNVFKRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTIAACTGCQYAA 231



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 97/170 (57%), Gaps = 2/170 (1%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D+ P   +     RGIEVGH+F  GTKYS P+  TF   DGK+  + MG YGIG  RVVA
Sbjct: 391 DACPRCGQPIELTRGIEVGHVFKLGTKYSEPLKCTFLDEDGKEKVMVMGCYGIGVSRVVA 450

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + IE +HD  GI++P  +APF+  L  +   +       E+ YA L   G DV  DD  E
Sbjct: 451 SCIEQNHDADGIVFPPPIAPFEAVLCCLDPKNGETLGKAEEFYAELKAQGVDVILDDRDE 510

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + G +F  ADL+G PLQ++VG K ++   VE K R TG + ++ +E    
Sbjct: 511 RPGVKFKDADLVGMPLQLVVGGKGLARGIVEAKDRRTGEKTELPVEGFAE 560


>gi|322383766|ref|ZP_08057517.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151978|gb|EFX44921.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 649

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 157/436 (36%), Gaps = 34/436 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD       L + +    +  +G+  WLP G      +   I + + + G   +  P
Sbjct: 240 AKKRDHRKLGKDLKIFS-FSREVGQGLPLWLPNGATIRRTLERYIVDLEEKLGYQHVYTP 298

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L + DL+  SG ++ Y ++M      +++ ++  P +      ++++ + SYR+LP   
Sbjct: 299 VLANVDLYKTSGHWEHYREDMFPPMQLDNEELVLRPMNCPHHMMVYKNELHSYRDLPIRI 358

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R E+     G+ R R   + DA+ F   P+  K  + ++     +++   G+ 
Sbjct: 359 AELGTMHRYEMSGALTGLHRVRAMTLNDAHIF-CRPDQIKEEFARVITLIRQVYADFGIT 417

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               R                  D  +T  +   D M         +  +   L     +
Sbjct: 418 DYRFRLSYR--------------DPQDTDKYFPNDEMWEMSQRMLKEVVE--ELRLPYYE 461

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      + ++  +L + + +S   ++    F    ++       + G DG+ H 
Sbjct: 462 AEGEAAFYGPKLDVQIKTALKKEETLSTAQLD----FLLPERF----ELEYVGEDGQKHR 513

Query: 312 VQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             +   GI + M  + A +  +  G    W   + P +  ++ +        D  +++  
Sbjct: 514 PVVIHRGIVSTMERMTAFLLENFAGALPTW---LCPVQAKILPV---SSAFNDYAKEMED 567

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G  V  D   E++G +   + L   P  ++VG          ++ R  G     S
Sbjct: 568 RLKQAGIRVAADLRNEKLGYKIRESQLEKVPFMLVVGENEKQSGSFSVRRRGEGDLGVHS 627

Query: 431 LEEVINYASHRFSNNR 446
            + +I          +
Sbjct: 628 ADALIQMIREEIDTKK 643


>gi|258543749|ref|ZP_05703983.1| proline--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258520985|gb|EEV89844.1| proline--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 567

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 123/225 (54%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++L   +E P DAE+ SH+LMLR GMI Q++ G+YSWLPLG + L  V  IIREE
Sbjct: 1   MRLSRFWLTTQKETPADAEVISHQLMLRAGMIRQNALGVYSWLPLGLRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G++E+ +P +Q  +LW ESGR+  YG E+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGSLELLMPGVQPGELWQESGRWQDYGPELLRFLDRHEREYCLGPTHEEVITDLMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF L     + +Y  M+ +
Sbjct: 121 DLSSYKQLPLNVYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFHLDEASLQATYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL   P+ A++G IGG  SHEF VLA TGE  +  S 
Sbjct: 181 YCRIFDRLGLDYRPVLADNGSIGGTGSHEFHVLAATGEDAIVFSS 225



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 3/203 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +   P    +D+ N    D  P+        RGIEVGHIF  G KYS  M
Sbjct: 363 DDYHYFNINWERDVPLGKVADLRNIVEGDPAPDGSGTLAIRRGIEVGHIFQLGKKYSEAM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
               +  DG      MG YGIG  RVVAA IE +HD +GIIWP ++APF ++++ + A  
Sbjct: 423 GLKIQLEDGGSAIPLMGCYGIGVTRVVAAAIEQNHDERGIIWPQAIAPFTVAILPLNAAK 482

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                 A E +Y +L   G DV  DD G++ G  FA  DL+G P +V++  K +++ +VE
Sbjct: 483 SPEVMAAAEALYQKLLAAGVDVVLDDRGKRPGFMFADMDLIGIPARVVISDKTLANGEVE 542

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
            K R +   E ++L+ + +  + 
Sbjct: 543 YKERRSDSAEMVALDAIYDRLTA 565


>gi|91762425|ref|ZP_01264390.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718227|gb|EAS84877.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 638

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 149/441 (33%), Gaps = 39/441 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      ++ L      + S G   W   G K    + A +R  Q 
Sbjct: 229 LDEYLKRIEEAEKRDHRKLGKEMDLF--HFREESPGSVFWHEKGWKLFQKLVAYMRARQE 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E++ P +    LW +SG ++ YG+ M      ++K     P +      +F   +
Sbjct: 287 KAGYKEVNTPEILDRSLWEKSGHWEKYGEHMYTSQTPDEKIFAIKPMNCPGHVQVFNQGL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G++R R F   DA+ F  T +        +    
Sbjct: 347 KSYRDLPLRISEFGKVHRYEPSGALHGLLRVRAFTQDDAHIF-CTEDQITSECLIVTNLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I+  LG + + ++    P            A+        +          E      
Sbjct: 406 LDIYKDLGFEDVILKYSDRPDLRVGDDNVWDKAEKALLDAVKASKLQYTINKGEG----- 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A         L D++  + +     +++               A+
Sbjct: 461 ---------------AFYGPKIEFVLRDAIGRDWQCGTLQVDLNLPGRL--------DAS 497

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           F   DG K   V +     G++     ++  ++ GK   W   +AP +  +I I    + 
Sbjct: 498 FVDKDGTKKIPVMLHRALFGSLERFIGILIENYAGKFPFW---IAPLQAVVIPI---SEE 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +++  G     D     +  +     L   PL +I G K V  + V I+ 
Sbjct: 552 FDTYAKEVNEKINNAGISSEVDLKNHNLNYKIREHSLSKIPLLLICGKKEVDSNSVTIRR 611

Query: 421 RLTGIREDMSLEEVINYASHR 441
             T  +E+M L   +   S  
Sbjct: 612 LDTNKQENMELNLFLETFSAL 632


>gi|39996615|ref|NP_952566.1| threonyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|73919793|sp|Q74D04|SYT_GEOSL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39983496|gb|AAR34889.1| threonyl-tRNA synthetase [Geobacter sulfurreducens PCA]
          Length = 636

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 146/442 (33%), Gaps = 44/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +        G   W P G      +    R E  + G
Sbjct: 232 YLEKIEEAKRRDHRKLGRELDLFS-FSDDVGAGFVIWHPKGAMLRTLLEDFERREHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG YD+Y + M    +   +     P +      I++S ++SY
Sbjct: 291 YDIVVGPQILKTELWQRSGHYDNYRENMY-FTEVEGQGFGIKPMNCLSHMMIYKSQLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F+++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 350 RDLPLRFFELGTVHRHERAGVLHGLLRVRCFTQDDAHIL-CTPEQLDAEIKGVISFVNDV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P     S E    A                   +      D   
Sbjct: 409 MGIFGFDY-EMELSTRPEKSIGSDEDWERA-----------------TGALLGALKDSGR 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              I E   A Y    D+      D          R  +   I      ++LP     T+
Sbjct: 451 PYEINEGDGAFYGPKIDIKLRDSLD----------RKWQCATI---QCDFTLPERFDLTY 497

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG+     M     +G++     V+     G   +W   ++P +  ++ +  + Q  
Sbjct: 498 VDADGERKRPVMVHRVILGSIERFIGVLIEHFAGNFPLW---LSPVQAIVLTVTDNQQ-- 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +++  L   G  V  D   E++G +   A L   P  +++G K V    V  + R
Sbjct: 553 -PYAAQVFETLRTNGVRVQKDFRNEKLGFKIREAQLQKIPYMLVIGDKEVESGTVTPRFR 611

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  M  EE + + +    
Sbjct: 612 DGSNLAAMKPEEFVAFVNDEVK 633


>gi|237746898|ref|ZP_04577378.1| prolyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229378249|gb|EEO28340.1| prolyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 578

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  +  IIREE
Sbjct: 1   MRASQFFISTLKEAPADAEIISHKLMVRAGMIRRLGSGIYAYMPMGLRVIHKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E+LR+ DR+D+  I  PT EEV+TDI R+
Sbjct: 61  MNRAGAVELLMPLVQPAELWQETGRWQKYGPELLRVKDRHDRDFIIQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G K SY  MF +
Sbjct: 121 VIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVAGLKKSYQVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF R GLK  P+ A++G IGG  SHEF V+ADTGE  +  S+D     
Sbjct: 181 YIKIFTRFGLKFRPVAADNGAIGGSGSHEFHVIADTGEDALVYSRDSDYAA 231



 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 3/236 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L++  +  ++               +  D+       E+     +  +D  N    D  P
Sbjct: 343 LSERTDIALYADHAVTVMSDFICGANEKDMHYTGVNWERDVPLPSTVADFRNVVEGDPSP 402

Query: 273 ENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           + K      RGIEVGH+F  GT+YS  M AT+   +GK   +QMG YGIG  R++ A IE
Sbjct: 403 DGKGTLAIQRGIEVGHVFQLGTRYSEDMHATYLDENGKPQLMQMGCYGIGVTRIMGAAIE 462

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D +GIIWP S+APF++ L  +     ++ R+  +K+Y  L   G DV  DD GE+ G
Sbjct: 463 QNNDERGIIWPVSIAPFEVVLCPLGYDRSEMVRNTADKLYGTLKNAGLDVLMDDRGERPG 522

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             F+  +L+G P ++++G + + + K+E + R       ++++++ N+   + ++ 
Sbjct: 523 VMFSDWELIGIPHRIVIGERGLKEGKLEYQGRRDKEATAVAIDDMANFIKDKLASE 578


>gi|157691545|ref|YP_001486007.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157680303|gb|ABV61447.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 643

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 170/446 (38%), Gaps = 41/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + + + RD      +L L   M  + + G+  +LP  Q   + + A  RE +
Sbjct: 232 QLAEYLHFMEEASKRDHRKLGKQLSLF--MFSEEAPGMPFYLPKSQIVRNELMAFSREVR 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++    E+S P + + +LW +SG +D Y + M   ++ +  +    P +      +F++ 
Sbjct: 290 SKAQYEEVSTPFMMNQELWEKSGHWDHYHENMY-FSEVDHTSFALKPMNCPGHMLMFKNS 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP    +     R E      G+ R R F   DA+ F L  +  +    ++F  
Sbjct: 349 LFSYRDLPIRMAEFGQVHRHEFSGALNGLFRVRTFCQDDAHIF-LREDQIEAEIKRIFQL 407

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P           ++++    V             +     
Sbjct: 408 VDHVYRTFGFEY-SVELSTRPEKALGDDAIWDISESALKNVLDRLKVDYQLNEGDG---- 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+L  + + +   ++    F    K+      
Sbjct: 463 ----------------AFYGPKIDFHIKDALQRSHQCATIQLD----FQMPEKF----DL 498

Query: 301 TFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+     +    V + S   G++     ++     G   +W   +AP ++ +I +    +
Sbjct: 499 TYINEKNEKVRPVVIHSAIFGSLDRFLGILIEHFAGAFPLW---LAPVQVQIIPV---SK 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +  D C ++  +L K+G  V  D+  E++G +   A +   P   ++G   + +  + I+
Sbjct: 553 IHLDHCLEVQQQLRKIGIRVTIDERDEKLGYKMREAQMQKIPYIAVIGDTEMQEKTLNIR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                    +S+++  + A+ +  + 
Sbjct: 613 QHGEKTSNQLSIDDFQHMAAQQIKDR 638


>gi|229845777|ref|ZP_04465889.1| prolyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810781|gb|EEP46498.1| prolyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 572

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 114/208 (54%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++            D+ N    D  P+ K      RGIEVGHIF  G KYS  +
Sbjct: 364 DGKHYFNVNWVRDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAV 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|39996560|ref|NP_952511.1| prolyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|81832056|sp|Q74D59|SYP_GEOSL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39983441|gb|AAR34834.1| prolyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298505576|gb|ADI84299.1| prolyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 570

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + YF+P L+E P DAE+ SH+LMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYTNYFIPTLKETPSDAEVVSHQLMLRAGMIRKLAAGIYNYLPLGLRSIRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P++Q A+LW ES R++ YGKE+LR  DR D     GPTHEEV+TDI R 
Sbjct: 61  MDRAGAIELLMPSVQPAELWQESTRWEQYGKELLRFKDRKDAEFCLGPTHEEVVTDIVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR +PF  YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    S  SY+KM+ +
Sbjct: 121 EVKSYRQMPFNLYQIQAKFRDEIRPRFGLMRGREFIMKDAYSFDVDSSASDLSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +          
Sbjct: 181 YRRIFQRCGLKFRAVEADTGSIGGSSSHEFMVLADSGEDAIVSCTQCEYAA 231



 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 105/191 (54%), Gaps = 3/191 (1%)

Query: 257 AATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
              +D+ N    D  P          RGIEVGH+F  GTKYS  + AT+  ADGK+  + 
Sbjct: 376 TQYADIRNVVHGDPCPRCEAGHLELWRGIEVGHVFKLGTKYSEALRATYLDADGKEQIIF 435

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA IE +HD  GII+P  +APF   +  +   D     ACE +Y  L 
Sbjct: 436 MGCYGIGISRTVAACIEQNHDADGIIFPIPIAPFHCIVSAVNTKDAEVMAACESLYLDLR 495

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G +F  ADL+G PL+++VGSK ++D KVE+K R TG  E + L  
Sbjct: 496 AAGVEVLFDDRDERPGIKFKDADLIGIPLRLVVGSKNLADGKVELKSRRTGEVELLPLAG 555

Query: 434 VINYASHRFSN 444
            +    +  + 
Sbjct: 556 AVEKVRNIVAE 566


>gi|29345832|ref|NP_809335.1| threonyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|73919769|sp|Q8AAP2|SYT_BACTN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29337725|gb|AAO75529.1| threonyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 646

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 86/459 (18%), Positives = 161/459 (35%), Gaps = 62/459 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y + + +   RD      +  ++  M  +   KG+  WLP G      +   +R  Q
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKE--MQLFMFSETVGKGLPMWLPKGTALRLRLQEFLRRIQ 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFR 119
            R    E+  P + +  L+V SG Y  YGK+  +        +     P +     +I++
Sbjct: 286 TRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYK 345

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++ 
Sbjct: 346 NFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVM 404

Query: 179 VSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +F  +  ++   +            IG D + E        E  +  + +    P
Sbjct: 405 DIISIVFRSMNFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACEEKGLP 458

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                            E    +    K        +G  +  G
Sbjct: 459 AK------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLG 488

Query: 292 T---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + 
Sbjct: 489 TIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LT 545

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +++++ I    +   +  E++   L         DD  E+IG +    ++   P  +I
Sbjct: 546 PDQVAILPI---SEKFNEYAEQVKMYLKMHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLI 602

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VG K   + +V ++ +  G +  M  EE     +    N
Sbjct: 603 VGEKEAENGEVSVRRQGEGDKGTMKYEEFAKILNEEVQN 641


>gi|167842004|ref|ZP_02468688.1| prolyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 578

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MRASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFSRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVIADVRNVKAGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFIDESGKTQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A + +YA L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADTLYADLVAAGVDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D K+E + R       +  +      + +  
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLPADSAATAVAEKVR 573


>gi|85711988|ref|ZP_01043042.1| Prolyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85694174|gb|EAQ32118.1| Prolyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 569

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 162/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+W P G + L  V  ++REE
Sbjct: 1   MRSSQYLLSTLKETPSDAEIVSHQLMLRAGMIRKVASGLYTWTPTGLRVLKKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEE+++++ R 
Sbjct: 61  MERINALEILMPMVQPADLWQESGRWEDYGPELLRIKDRHERDFLLGPTHEEIISELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMR+REF+MKDAYSF LT E  + +Y++M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHLTDESLQQAYDEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL   P+ A++G IGG  SHEF VLA +GE  +  S 
Sbjct: 181 YCRIFQRLGLDFRPVIADTGSIGGHASHEFHVLAGSGEDAIAFSD 225



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 1/176 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +     ARGIEVGHIF  G KYS  M        GK   + MG YGIG  RVVAA I
Sbjct: 393 PCGQGTLQIARGIEVGHIFQLGKKYSNAMKVGVLSETGKHETLTMGCYGIGVSRVVAAAI 452

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E  HD +GI WP+ +APF+++++ +  H     +    ++Y +L   G DV +DD  E+ 
Sbjct: 453 EQFHDDRGINWPNELAPFEVAIVPMNMHKSARVQKVANELYQQLRDAGFDVLFDDRKERP 512

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G  F   +L+G P Q+++G + + +  VE + R    ++ M +  V+ + +    N
Sbjct: 513 GVMFTDMELIGVPHQIVIGERNLDEEMVEYQSRSDRDKQKMPINSVLEFLNQTLRN 568


>gi|326533164|dbj|BAJ93554.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 162/449 (36%), Gaps = 43/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +L +++E    A+   H+L+         H  S G   +LP G    + +   +R
Sbjct: 302 KRLKEYLHMIEE----AKKRDHRLLGQSQELFFFHPLSPGSCFFLPNGAIIYNKLMDFLR 357

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E    G  E+  P + +  LW  SG   +Y   M    +   +     P +      +F
Sbjct: 358 KEYRERGYREVLSPNIYNMQLWETSGHAANYKDNMFVF-EIEKQEFGLKPMNCPGHCLMF 416

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F  T    K      
Sbjct: 417 GHKVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTESQIKDEVGAC 475

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G +   +   + P       E    A+   T+             ++  
Sbjct: 476 LEFIDYVYKIFGFQY-ELELSTRPEKYLGDIETWNKAEQQLTEALNEFGKPWKINEADG- 533

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  +FD+L    + +   ++    F    ++ L 
Sbjct: 534 -------------------AFYGPKIDIGVFDALKRKFQCATLQLD----FQLPLRFKLT 570

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +     +  V +    +G++  + A++   ++GK   WP  ++P +  +  + ++
Sbjct: 571 YSA--EDEAKLERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCCVSSN 625

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   ++++A++   G  V  D     I  +   A L  F   ++VG+K     KV 
Sbjct: 626 S---LAYAKEVHAQIHAAGFHVDIDMTDRTIQKKVREAQLAQFNYILVVGAKEAESGKVV 682

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R        S+ +VI   S   ++ +
Sbjct: 683 LRVRDKADLSTESIADVIARFSDEVASFK 711


>gi|78189671|ref|YP_380009.1| threonyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123729828|sp|Q3APV9|SYT_CHLCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78171870|gb|ABB28966.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           chlorochromatii CaD3]
          Length = 657

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 160/450 (35%), Gaps = 49/450 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L   +  +   G+  WLP G      + + +REEQ + G + 
Sbjct: 245 RIEEAKRRDHRKLGAELELFL-LSPEVGSGLPMWLPKGAIIRSELESFLREEQRKRGYVP 303

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +  P + + +L+  SG Y  Y             D   +  +  P +      I+ S ++
Sbjct: 304 VYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEDGKQEQYLLKPMNCPHHHLIYSSKMR 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E      G+ R+R F   D++ +   P+              
Sbjct: 364 SYRDLPLRFTEFGTVYRHEQSGELNGLARARGFTQDDSHIY-CRPDQLVDEICSAIELTQ 422

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG   +  R                L D      +     +      +  +  + 
Sbjct: 423 FVFKTLGFAEVQTRLS--------------LHDPANQAKYGGTAEVWEQAEKDVQEAAER 468

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP-- 297
           + ++  +    A +         +                 +G  +  GT    Y +P  
Sbjct: 469 MGVDYFIGIGEASFYGPKIDFIVRDA---------------IGRKWQLGTVQVDYVMPER 513

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+ G+DG+ H  V +     G+M     ++     G   +W   +AP +++++ I  
Sbjct: 514 FDLTYVGSDGQKHRPVVIHRAPFGSMERFIGLLIEHTAGNFPLW---LAPVQVAVLPIA- 569

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D    +Y RL   G     D   E+I  +   A++   P  +++G K  ++ +V
Sbjct: 570 --EENHDYATTVYRRLLAAGIRAELDTRSEKINRKIRDAEMSKTPCMLVIGQKEQANGEV 627

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++    G     + +E+I       +N +
Sbjct: 628 SLRRHRQGDAGRFATDELIETLKQEIANRQ 657


>gi|329115645|ref|ZP_08244367.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326695073|gb|EGE46792.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 645

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 156/440 (35%), Gaps = 45/440 (10%)

Query: 8   LPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L  L+E    AE   H+ + +  G+ H  + + G   W   G +    +   +R  Q R 
Sbjct: 235 LHQLEE----AEKRDHRRIGKEMGLFHFQEEAVGQVFWHAKGWRLYTALQDYMRRAQTRH 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G  E+  P L    LW  SG +D Y   M      ++       P +      IFR  ++
Sbjct: 291 GYQEVRTPQLVDRALWEASGHWDKYRHHMFIATVEDENKTLALKPMNCPCHVQIFRHGLR 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +     R E      G+MR R F   DA+ F  T +       +      
Sbjct: 351 SYRELPLRMAEFGACHRYEPSGALHGLMRVRGFTQDDAHIF-CTEDQIADETVRFVKMLH 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG + + ++    P     S E    A+    +            P E       
Sbjct: 410 DVYQDLGFEHVRVKFADRPEQRAGSDEVWDKAENALKEACTVAGVEYEHNPGEG------ 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A         L D++  + +     +++               A++
Sbjct: 464 --------------AFYGPKLEFVLRDAIGRDWQCGTLQVDLVLPERL--------DASY 501

Query: 303 KGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D G+   V +    +G+      ++   H G+  +W   +AP ++ + +I +     
Sbjct: 502 IGEDSGRHRPVMLHRAILGSFERFLGILIEQHAGRFPLW---LAPVQVVVASIVSD---A 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++ A L + G  V  D   ++I ++     +   P+ ++VG +   +  V ++  
Sbjct: 556 APYAEEVAAALREAGLAVEADVRNDKINAKVREHSVARVPVILVVGRREAEERTVAMRRL 615

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +SL + +    + 
Sbjct: 616 GTQAQETLSLNDAVARLKNE 635


>gi|99081562|ref|YP_613716.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
 gi|123077585|sp|Q1GFW2|SYT_SILST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|99037842|gb|ABF64454.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
          Length = 648

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 152/446 (34%), Gaps = 49/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G +    +   +R  Q
Sbjct: 234 KAHLTMLEE----AAKRDHRKLGREMNLFHMQEEAPGQVFWHPNGWRIYTTLQDYMRRMQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
           +R G +E++ P +    LW +SG +D Y + M  +    D A         P +      
Sbjct: 290 DRDGYVEVNTPQVVDRKLWEKSGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   D + F  T +       
Sbjct: 350 VFNQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIF-CTEDQITSETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K      +++  LG  +  ++  + P     S E     +        +  +    +  E
Sbjct: 409 KFIAFLSKVYADLGFDNWTIKLSTRPEQRIGSDETWDNMEQALGDACKAAGYDYEILEGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++  N +     ++            
Sbjct: 469 GAFYGPKLEFTLT--------------------DAIGRNWQCGTLQVDANLPERL----- 503

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A+F G DG K   V +    +G+      ++   H GK   W   +AP ++ + +I
Sbjct: 504 ---EASFIGQDGSKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++   L   G     D   E+I  +     +   P+ + VG + V + 
Sbjct: 558 TS---EADDYVNEVVETLRAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGHREVEER 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
            V ++       +  SL  V    + 
Sbjct: 615 TVSVRRLGEKQTKVESLTNVTEELAK 640


>gi|27380648|ref|NP_772177.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27353813|dbj|BAC50802.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 144/444 (32%), Gaps = 41/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W P G      + A +R       
Sbjct: 300 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHPKGWTIFQQLIAYMRRRLTG-D 356

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M           + +     P +      IF+ 
Sbjct: 357 YSEVNAPQILDKVLWETSGHWGWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKH 416

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T +       K+  
Sbjct: 417 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEDQLAEECLKIND 475

Query: 180 SYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  +   G    + ++  + P     +      A+     V       +  I      
Sbjct: 476 LILSTYADFGFTGDLTVKLSTRPDKRVGTDAMWDHAERVMATVLREIQSQNNHIK----- 530

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                      E      A         L D++  + +     ++    F    ++    
Sbjct: 531 ----------TEINPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVD----FNLPERF---- 572

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   DG K   V +     G+M     ++   + G   +W   ++P +  +  I + 
Sbjct: 573 GAFYIDHDGGKKPPVMVHRAICGSMERYIGILIEHYAGNFPLW---LSPVQAVVTTITSE 629

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++  +  + G  V  D   E+I  +     L   P  ++VG K      V 
Sbjct: 630 GD---EYAKQVLEQARRAGLRVEIDLRNEKINYKVREHSLAKIPALLVVGKKEAETHSVS 686

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++   +  ++ M+  E I      
Sbjct: 687 VRRLGSDGQKVMTTAEAIAALVEE 710


>gi|300114474|ref|YP_003761049.1| threonyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299540411|gb|ADJ28728.1| threonyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 644

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 156/441 (35%), Gaps = 39/441 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +L  L+E   RD       L L + +  +   G+  W P+G +    +    +E 
Sbjct: 226 KALEAYLHRLEEAEKRDHRRIGSDLDLFS-IQEEAGGGLVFWHPMGARIRRVIEDFWQER 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                   +  P +   +LW  SG  D Y + M +  + + +     P +      +++ 
Sbjct: 285 HTAASYETLYTPHIAHEELWQTSGHTDFYRESMYQPMEDDHQLYQLKPMNCPFHVLVYQG 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP  + ++   +R E+     G+MR R F   DA+ F    E  ++    +  
Sbjct: 345 RLRSYRELPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIF-CREEQIENEILGILD 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +    G     +   + P            A          K              
Sbjct: 404 LTLEMLAAFGFDRYEIDLSTRPEKSVGPEAIWDQATQALRSALDKKGLDYAVDEGGG--- 460

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    + S   ++    F    ++++   
Sbjct: 461 -----------------AFYGPKIDIKIEDAIGRKWQCSTVQLD----FNLPERFAM--- 496

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   DG  H  + +    +G++     V+   ++GK    P  +AP ++ +++I    
Sbjct: 497 -EYVAEDGARHRPIMIHRAVLGSLERFFGVLIEHYEGKF---PPWLAPIQVVVMSITDRQ 552

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   +   G     D   E+IG +     L   P  +++G + V++  V +
Sbjct: 553 EG---YARQVEETMKNKGFRSLLDLRNEKIGFKIREHTLRRIPYLLVIGDREVANQTVAV 609

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           + R +     MSL+  + + S
Sbjct: 610 RTRYSQDLGVMSLDAFMEHLS 630


>gi|134095943|ref|YP_001101018.1| prolyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166980129|sp|A4G8R0|SYP_HERAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|133739846|emb|CAL62897.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) (Global RNA
           synthesis factor) [Herminiimonas arsenicoxydans]
          Length = 577

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGSGIYTYMPIGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  AIE+ +P +Q A+LW E+GR+D  G E++R+ DR+ +     PT EEV+TD+ RS
Sbjct: 61  MNRAHAIELLMPLVQPAELWQETGRWDKMGPELMRVKDRHGREYAIQPTSEEVVTDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIKSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDAEGLKRSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y++IF+R GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVKIFNRFGLQFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 7/220 (3%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEV 284
             DF   +   DF        +      P A   D+ N    D  P+ K      RGIEV
Sbjct: 361 MSDFVCGANEVDFH----FTGVNWGRDLPEAMVLDLRNVVEGDPSPDGKGVLAIQRGIEV 416

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GT YS  M AT+   +GK   +QMG YGIG  R+V A IE + D +GIIWP ++
Sbjct: 417 GHVFQLGTAYSEKMKATYLDENGKPQLIQMGCYGIGVTRIVGAAIEQNFDDRGIIWPAAL 476

Query: 345 APFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF++ L  +     +  +   +K+Y  L   G DV  DD GE+ G+ FA  +L+G P +
Sbjct: 477 APFEVVLCPMGYDRSESVKTETDKLYEALLAAGVDVILDDRGERPGAMFADWELIGAPHR 536

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++G + + +  +E K R       ++L++++ +   R +
Sbjct: 537 IVIGERGLKEGALEYKGRRDADATAVALDDMLAFVQARLA 576


>gi|298384716|ref|ZP_06994276.1| threonine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298262995|gb|EFI05859.1| threonine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 646

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 86/459 (18%), Positives = 161/459 (35%), Gaps = 62/459 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y + + +   RD      +  ++  M  +   KG+  WLP G      +   +R  Q
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKE--MQLFMFSETVGKGLPMWLPKGTALRLRLQEFLRRIQ 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFR 119
            R    E+  P + +  L+V SG Y  YGK+  +        +     P +     +I++
Sbjct: 286 TRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYK 345

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++ 
Sbjct: 346 NFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVM 404

Query: 179 VSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +F  +  ++   +            IG D + E        E  +  + +    P
Sbjct: 405 DIISIVFRSMNFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACEEKGLP 458

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                            E    +    K        +G  +  G
Sbjct: 459 AK------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLG 488

Query: 292 T---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + 
Sbjct: 489 TIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LT 545

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +++++ I    +   +  E++   L         DD  E+IG +    ++   P  +I
Sbjct: 546 PDQVAILPI---SEKFNEYAEQVKMYLKMHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLI 602

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VG K   + +V ++ +  G +  M  EE     +    N
Sbjct: 603 VGEKEAENGEVSVRRQGEGDKGTMKYEEFAKILNEEVQN 641


>gi|161525965|ref|YP_001580977.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189349316|ref|YP_001944944.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221202408|ref|ZP_03575440.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221208132|ref|ZP_03581137.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221213248|ref|ZP_03586223.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|226699126|sp|A9AI56|SYP_BURM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160343394|gb|ABX16480.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189333338|dbj|BAG42408.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221166700|gb|EED99171.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221172035|gb|EEE04477.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221177685|gb|EEE10100.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 578

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 168/224 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAVELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADVRNVKKGDPSPDGKGAIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGIGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDAVREAADKLYAELTAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D K+E + R       +   E     + +  
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDTEATLLPAGEAAATVAEKVR 573


>gi|304382923|ref|ZP_07365405.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304335948|gb|EFM02196.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 654

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 170/446 (38%), Gaps = 35/446 (7%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R+ 
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQGMLRKI 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q   G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F
Sbjct: 287 QKNYGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    +R E      G+ R R F   DA+ F   PE  K  + ++
Sbjct: 347 SWKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIF-CRPEQVKSEFLRV 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F     K++  +                  D  + + +   D +         
Sbjct: 406 MDIIQTVFKVFDFKNVEAQISLR--------------DPNDREKYIGSDEVWEHSEQSII 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +      LN+  +      A      +  + D++    ++    ++    +    ++ L 
Sbjct: 452 EACKEKGLNA--KIAYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVD----YNLPQRFKLE 505

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A     + K   V +     G+M    AV+     G   +W   + P +++++ I   
Sbjct: 506 YTA---DDNSKQTPVMIHRAPFGSMERFTAVLIEHTAGHFPLW---LTPDQVAILPI--- 556

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D   K+   L  VG     D+  E+IG +    ++   P  VIVG K  ++  V 
Sbjct: 557 SEKFNDYARKVAHYLDSVGVRANIDERNEKIGRKIRDNEIKRVPYMVIVGEKEAAEGLVS 616

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ +  G +  MS+E+     +   +
Sbjct: 617 MRKQGGGEQATMSMEDFATRINEEVA 642


>gi|172038860|ref|YP_001805361.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171700314|gb|ACB53295.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 608

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 170/448 (37%), Gaps = 51/448 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 196 EEALKRDHRRLGKELGLFI-FSDPVGPGLPLWTPKGTIIRSTLEDFLKQEQLKRGYLPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG + +Y ++M  +    ++A       +  P +      I++S ++S
Sbjct: 255 TPHIGRVDLFKISGHWQNYKEDMFPMMAETEEAKTSEMGFVLKPMNCPFHIQIYKSELRS 314

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    +R E     G + R R F + D++ F +TP+     +  +    L 
Sbjct: 315 YRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPDQLDDEFLNVVDLILS 373

Query: 184 IFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +F  L LK+   R        D    S+E    A+    +   + +   F    E   + 
Sbjct: 374 VFRSLQLKNFKARLSFRDPNSDKYIGSNEAWNKAENAIRRAVQTLEMDYFEAEGEAAFYG 433

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               +    R  ++G +      Y+LP   
Sbjct: 434 PKLDF---------------------------IFQDALEREWQLGTV---QVDYNLPERF 463

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G +G  H  V +     G++  +  ++   + G   +W   +AP ++ L+ +   
Sbjct: 464 ELEYVGEEGNRHRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPTQVRLLPV--- 517

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             V  D  + +  ++  +G     D  GE++G      +    P+  IVG+K V  + + 
Sbjct: 518 SDVQLDYVKDVANKMLSLGIRAEADTSGERLGKMIRNGEKQKIPVMAIVGAKEVEANALS 577

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R +G    M+++EVI   +   +N+
Sbjct: 578 IRTRASGELGTMAVDEVIEKLNDAITNH 605


>gi|146329716|ref|YP_001210021.1| prolyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|166980118|sp|A5EXK9|SYP_DICNV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146233186|gb|ABQ14164.1| prolyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 572

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 137/312 (43%), Positives = 179/312 (57%), Gaps = 29/312 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++L   +E+P +AE+ SH+LMLR GMI Q + GIYSWLPLG + L+ V+AIIREE
Sbjct: 1   MRLSQFWLVTKKESPAEAEVISHQLMLRAGMIRQTAVGIYSWLPLGLRVLNKVSAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P  Q A+LW ESGR+ +YG E+ R  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEVVMPAAQPAELWQESGRWHAYGPELQRFIDRHQRDYCIGPTHEEVVTDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF+MKD YSFDL   G K+SY KM+ +
Sbjct: 121 DLSSYKQLPVNLYQIQTKFRDEIRPRFGVMRGREFVMKDGYSFDLDVAGMKNSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA+TGE  +  S          +     
Sbjct: 181 YCRIFDRLGLNYRPVIADNGAIGGTGSHEFHVLAETGEDSIAFSNASDYAANIEKAEALP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                                          P  +       +   I     +Y LP+  
Sbjct: 241 PTKPR------------------------PAPSLEMEKRATPDCKTIAQLVERYQLPIEK 276

Query: 301 T-----FKGADG 307
           T      +GADG
Sbjct: 277 TLKTLLVEGADG 288



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A    T+D+ N    D  P+ +      RGIEVGH+F  G KYS  M
Sbjct: 366 DGYHYFNVNWERDAEITRTADIRNVVEGDPSPDGQGTLLIRRGIEVGHVFQLGEKYSKAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           + T    DG      MG YGIG  RV+AA IE +HD  GIIW   +APF ++++ I A  
Sbjct: 426 NLTVPLEDGTLCTPLMGCYGIGVTRVIAAAIEQNHDENGIIWSKELAPFSVAILPINADK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  RDA E +Y +  + G DV  DD   + G  FA  DL+G P ++++  K ++   VE
Sbjct: 486 SEAVRDAAEALYQKFLQAGVDVVLDDRNRRAGVMFADIDLIGIPARIVISDKTLATGSVE 545

Query: 418 IKHRLTGIREDMSLEEVI-NYASHR 441
            K R       +SLEE++  + +  
Sbjct: 546 FKRRNEQETFHISLEEIVAQFCAEE 570


>gi|16272670|ref|NP_438888.1| prolyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260579822|ref|ZP_05847652.1| prolyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174537|sp|P43830|SYP_HAEIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1573733|gb|AAC22388.1| prolyl-tRNA synthetase (proS) [Haemophilus influenzae Rd KW20]
 gi|260093106|gb|EEW77039.1| prolyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 572

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|242033449|ref|XP_002464119.1| hypothetical protein SORBIDRAFT_01g012680 [Sorghum bicolor]
 gi|241917973|gb|EER91117.1| hypothetical protein SORBIDRAFT_01g012680 [Sorghum bicolor]
          Length = 739

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 160/449 (35%), Gaps = 43/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           RR   +   L+E    A+   H+++ +       H+ S G   +LP G +  + +   +R
Sbjct: 330 RRLTEYKHFLEE----AKKRDHRILGKAQELFFFHELSPGSCFFLPHGARIYNKLMDFMR 385

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y + M    +   +     P +      +F
Sbjct: 386 QQYRARGYQEVLSPNMYNMQLWETSGHAANYKENMFVF-EIEKQEFGLKPMNCPGHCLMF 444

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            + ++SYR LP       +  R+EL     G+ R R F   DA+ F    +  K     +
Sbjct: 445 ANRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CREDQIKDEVKAV 503

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P       E    A+   T+              +  
Sbjct: 504 LDFINYVYEIFGFKY-ELELSTRPEKYLGEIETWNKAEQQLTEALNEFGKPWKINEGDG- 561

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  +FD+L    + +   ++    F    ++ L 
Sbjct: 562 -------------------AFYGPKIDIGVFDALKRKFQCATLQLD----FQLPIRFKLA 598

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +     +  V +    +G++  + A++   ++GK   WP  ++P +  + ++ + 
Sbjct: 599 YSA--EDEAKIERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSVSSG 653

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++ A L + G     D     I  +   A L  F   ++VG++      + 
Sbjct: 654 S---VEYAKQVLATLHEAGFHADIDASDRTIQKKVREAQLAQFNYILVVGAQEAETGNIC 710

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R       MS++  +       +  R
Sbjct: 711 VRVRDNADLATMSVDGFVTRLKEEIAAFR 739


>gi|163746007|ref|ZP_02153366.1| threonyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380752|gb|EDQ05162.1| threonyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 648

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 151/451 (33%), Gaps = 59/451 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 RAHLNMLEE----AAKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWSIYTQLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            + G +E++ P +    LW  SG ++ Y   M  +    + A         P +      
Sbjct: 290 RKGGYVEVNTPQVVDRKLWEASGHWEKYQDHMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIEAETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       I+  LG ++  ++    P     S E    A+        +        P E
Sbjct: 409 KFIAFLSEIYRDLGFENFKVKFSDRPEKRSGSDEVWDKAEAALLSATRAAGIEPELNPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--- 292
              +   +                                        +G  +  GT   
Sbjct: 469 GAFYGPKLEFVLTDA---------------------------------IGRDWQCGTHQV 495

Query: 293 KYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            + LP  + AT+ GAD GK   V +    +G+      ++   H GK   W   +AP ++
Sbjct: 496 DFVLPERLDATYIGADGGKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQV 552

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + +I +      D   ++   L   G     D   E+I  +     +   P+ + VG++
Sbjct: 553 VVASITS---EADDYVAEVVETLKAAGVRAEADMRNEKINYKVREHSVGKVPVILAVGAR 609

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            V +  V ++           L+ +    + 
Sbjct: 610 EVEERTVSVRRLGQKQTSVQPLDTLTAELAQ 640


>gi|187930129|ref|YP_001900616.1| prolyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|226701322|sp|B2UCU9|SYP_RALPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187727019|gb|ACD28184.1| prolyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 574

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYC 224



 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARG 281
           +    DF + +   D+        +      P     D+ N    D+ P+ K      RG
Sbjct: 355 AAAMSDFVVGANEEDYH----FTGVNWGRDLPEPEVYDLRNVVAGDASPDGKGTLAICRG 410

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R++ A IE ++D +GIIWP
Sbjct: 411 IEVGHVFMLGTRYSEAMNATFLDENGKTQPMVMGCYGIGITRILGAAIEQNYDARGIIWP 470

Query: 342 DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            S+APF++ +  +        R+  ++++A L   G DV  DD GE+ G+ FA  +L+G 
Sbjct: 471 ASIAPFQVVICPVGYDRSDAVREEADRLHAELVAAGIDVMLDDRGERPGAMFADWELIGV 530

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P +V+VG + + + K+E + R       ++  +V+     R + 
Sbjct: 531 PFRVVVGDRGLKEGKLEFQGRRDEAATAVAPADVLATLKARLAQ 574


>gi|319775327|ref|YP_004137815.1| prolyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|319897767|ref|YP_004135964.1| prolyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|329122677|ref|ZP_08251255.1| proline--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317433273|emb|CBY81648.1| prolyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317449918|emb|CBY86130.1| prolyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327472551|gb|EGF17981.1| proline--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 572

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 13/259 (5%)

Query: 191 KSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++A+ G  +G   +    + A    T    S       I  ++          ++ 
Sbjct: 321 DETEIKAKIGAGVGSLGAVNLNIPAIIDRTVALMSDFSCGANINGKHYF--------NVN 372

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M AT +G DG
Sbjct: 373 WERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDG 432

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH-DQVCRDAC 365
           K   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H  +  +   
Sbjct: 433 KPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSEAVQKYA 492

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG 
Sbjct: 493 EELYRTLQSQGVDVIFDDRKERPGVMFADMELVGVPHMVVIGEKNLDNGEIEYKNRRTGE 552

Query: 426 REDMSLEEVINYASHRFSN 444
           +E +S +++++  + +  N
Sbjct: 553 KEMISKDKLLSVLNEKLGN 571


>gi|116747872|ref|YP_844559.1| threonyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116696936|gb|ABK16124.1| threonyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 644

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 155/442 (35%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      +L L +    +   G+  + P G      + A  + E  R
Sbjct: 229 KKYLHFLEEAQKRDHRRLGRELDLFS-FSDEVGAGMVIYHPRGALLRHILEAFEKREHLR 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  PTL   +LW  SG ++ Y + M    +  +++    P +      I++S ++
Sbjct: 288 RGYHIVMGPTLLKTELWKRSGHFEHYRENMY-FTEIEEQSYGIKPMNCLAHMLIYKSRLR 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  ++++    R E      G+ R R+F   DA+    TPE        +    +
Sbjct: 347 SYRDLPLRYFELGTVHRHERSGVLHGLTRVRQFTQDDAHIL-CTPEQLHGEIQSIIDFVI 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G  +  M   + P     S E    A +        K         E       
Sbjct: 406 EVMGIFGF-NHEMEISTRPAKSIGSDEDWERATSALIDALEDKGIPYQVCEGEG------ 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
                         A      + KL D+         R  +   I      ++LP     
Sbjct: 459 --------------AFYGPKIDVKLRDA-------LDRKWQCATI---QCDFTLPDRFDL 494

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG  H   M     +G++     V+     G    W   +AP +  ++ +     
Sbjct: 495 TYVGVDGNRHRPVMVHRVVLGSLERFIGVLVEHFAGAFPTW---LAPVQAIVVTVTDG-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +    +Y RL + G  V  DD  E++G +   A +   P  +++G + V+   V  +
Sbjct: 550 -QIEFARNMYDRLREAGVRVELDDRNEKLGYKIREAQMQKVPYMLVIGDREVAAGGVAPR 608

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R     E ++ E         
Sbjct: 609 RRDGTQLELIAPEAFAAMIQKE 630


>gi|298206753|ref|YP_003714932.1| threonyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849384|gb|EAP87252.1| threonyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 648

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 158/438 (36%), Gaps = 40/438 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 238 AKRRDHRKLGKELSLFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG++  +        +  +  P +     +I+ +   SYR+LP 
Sbjct: 297 HIGQKELYVTSGHYAKYGEDSFQPISTPAEGEEFLLKPMNCPHHCEIYNNSPWSYRDLPK 356

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    +R E      G+ R R F   DA+ F  TP+     + K+    + +F  LG
Sbjct: 357 RYAEFGTVYRYEQSGELHGLSRVRGFTQDDAHIF-CTPDQLDEEFKKVIDLTMYVFSSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                       +    ++  +    +  +   D      + 
Sbjct: 416 FENFTTQVSLRD-------------PENPDKYIGKEENWEKAENAILSAVKDKGLNYIVE 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
               A Y    D   +              R  ++G I      Y+LP     T+KG+D 
Sbjct: 463 TGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPERFDLTYKGSDN 509

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    A++     G   +W   + P +  ++++    +   +  +
Sbjct: 510 ELHRPVMIHRAPFGSMERFVAILLEHTAGNFPLW---LMPEQAIILSL---SEKYENYSK 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L         D   E +G +   A++   P  +IVG +  +D  V ++       
Sbjct: 564 KVLNLLENHEIRALTDHRSETMGKKIREAEVNKIPYMLIVGEQEENDGTVSVRKHGGEDL 623

Query: 427 EDMSLEEVINYASHRFSN 444
             M++EE     +   S 
Sbjct: 624 GTMTVEEFSKLVNEEISK 641


>gi|282858709|ref|ZP_06267863.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282588513|gb|EFB93664.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 649

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 167/450 (37%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R+ 
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDLLRKL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     +I+
Sbjct: 287 LKPYNYQEVITPGIGSKNLYVTSGHYAHYGKDAFQPIQTPEEDEEYMLKPMNCPHHCEIY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    +R E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 AHKPRSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRNFTQDDAHIF-VRPDQVKAEFENN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F   G ++   +                  D  + + +  +   D        
Sbjct: 406 IDIILKVFKTFGFENYEAQISLR--------------DPEDKEKYIGE---DDVWNESEQ 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  +   +        AA      +         K    R  ++G I      Y+LP
Sbjct: 449 AIKEACAEKGLKATVELGEAAFYGPKLDF------MVKDAIGRRWQLGTI---QVDYNLP 499

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   D  K   V +     G+M    AV+     G   +W   + P +++++ I
Sbjct: 500 QRFHLEYTAEDNTKKTPVMVHRAPFGSMERFTAVLIEHTAGHFPLW---LTPDQVAILPI 556

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D   ++  +L   G     DD  E+IG +    +L   P  V+VG K  ++ 
Sbjct: 557 ---SEKYNDYAREVMQKLDTAGVRALIDDRNEKIGRKIRDNELKRIPYMVVVGEKEAAEG 613

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ +  G +  M++++ I+  +   + 
Sbjct: 614 LVAMRKQGGGEQSTMTIQQFIDRVNAEVAE 643


>gi|291280439|ref|YP_003497274.1| prolyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290755141|dbj|BAI81518.1| prolyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 573

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 166/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+E+P +AE+ SHK MLR GMI + + GIY++LP G K +  V  I+R+ 
Sbjct: 1   MRLSQYFLPTLREDPSEAEVVSHKFMLRAGMIRKVAAGIYNYLPAGLKVIKKVENIVRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +  A+LW+ESGR++ YGKE+LRL DR+D+    GPTHEEV+TDI R+
Sbjct: 61  MNEAGAIELLMPAVVPAELWIESGRWNVYGKELLRLKDRHDRDFCIGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  EG++ SY  M+ +
Sbjct: 121 EVKSYKQLPLNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDVDDEGAEKSYMLMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF   GL+ + + A+SG IGG+ SHEF+V ADTGE  V    +     
Sbjct: 181 YCKIFEACGLEYVVVEADSGAIGGNFSHEFMVTADTGEDFVISCTNCDFAA 231



 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 123/264 (46%), Gaps = 9/264 (3%)

Query: 185 FHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +     +   +R   GP+G  G    +  V AD      +  K   +F +     D   I
Sbjct: 313 YVEFADEEDILRITGGPVGFSGPKGLDIPVYAD------YEIKYMKNFVLGVNEKDKHQI 366

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            S N   +     +    +           + +    +GIEVGHIF  GTKYS  M+A +
Sbjct: 367 NS-NLGRDFEVDGFGDFRNAVPGDKCARCKKGEYKITKGIEVGHIFKLGTKYSKAMNAYY 425

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              DGK   + MG YGIG  R  AA IE +HD KGIIWP  +APF++ ++ I  + +   
Sbjct: 426 LDKDGKQKLMVMGCYGIGIGRTAAAAIEQNHDEKGIIWPVQIAPFEVVIVPINTNSEDVV 485

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E +Y +L     DV  DD  E+ G +F  ADL+G+PL++ VG+K ++   VEI  R 
Sbjct: 486 NLSETLYLKLKNNNVDVLIDDRDERAGVKFNDADLVGYPLRINVGAKALAKGNVEIFIRK 545

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           T    ++  E+ I        + R
Sbjct: 546 TKETVEVKKEDAIAKTMQLLDDLR 569


>gi|254477067|ref|ZP_05090453.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214031310|gb|EEB72145.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 648

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 157/445 (35%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G +    +   +R  Q+R
Sbjct: 234 KAHLTMLEEAAKRDHRKLGKEMGLF--HMQEEAPGQVFWHPNGWRIYTQLQDYMRRMQDR 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
            G +E++ P +    LW +SG +D Y + M  +    D A         P +      +F
Sbjct: 292 DGYVEVNTPQVVDRKLWEKSGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    + +  +  K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCAEDQITSET-AKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG  +  ++  + P     S E     +    +   +  +    +  E  
Sbjct: 411 IAFLSKVYADLGFHNWTIKLSTRPEKRIGSDETWDHMEQALGEACKAAGYDFEILEGEGA 470

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +                         D++  N +     ++              
Sbjct: 471 FYGPKLEFTLT--------------------DAIGRNWQCGTLQVDANLPERL------- 503

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             ATF G DG K   V +    +G+      ++   H GK   W   +AP ++ + +I +
Sbjct: 504 -EATFIGQDGAKHRPVMLHRACLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITS 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++  +L   G     D   E+I  +     +   P+ + VG++ V +  V
Sbjct: 560 ---EADDYVLEVVEQLKAAGVRAEADMRNEKINYKVREHSVGKVPVILAVGAREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++       +  SLE V    +  
Sbjct: 617 SVRRLGEKQTKVESLETVTKTLATE 641


>gi|114706249|ref|ZP_01439151.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114538110|gb|EAU41232.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 670

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 151/457 (33%), Gaps = 54/457 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + K +L +L+E    AE   H+ + R        +   G+  W   G +   ++ + +R 
Sbjct: 231 QLKNYLHMLEE----AEKRDHRKLGREMDLFHFQEEGPGVVFWHSKGWRMFQSLVSYMRR 286

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGP 108
             + T   E++ P +    LW  SG +  Y + M  +            + + +     P
Sbjct: 287 RLDGT-YEEVNAPQILDKALWETSGHWGWYQENMFAVKSAHAFTRPDDAEADHRVFAIKP 345

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      IF+  +KSYR LP  + +     R E      G+MR R F   DA+ F  T 
Sbjct: 346 MNCPGHVQIFKHGLKSYRELPIRYAEFGNVHRYEPSGALHGLMRVRGFTQDDAHVF-CTE 404

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E       ++    L I+   G + I ++  + P     S E    A+            
Sbjct: 405 EQLAAECLRINDLILSIYADFGFEEIVVKLSTRPEKRVGSDENWDHAE-----AIMGDVL 459

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +    S       I+            Y                       R  + G  
Sbjct: 460 KEIEAKSGGKIRTSILEGEGAFYGPKFEYTLRDA----------------IGREWQCGTT 503

Query: 288 FYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 ++LP    A +   +  K   V +     G+M     ++  ++ G   +W    
Sbjct: 504 ---QVDFNLPERFGAFYIDENSEKKRPVMIHRAICGSMERFLGILLENYAGHMPLW---F 557

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P +  +  I +      D   ++   L   G  V  D   E+I  +     L   P+ +
Sbjct: 558 VPQQAVVATITS---EADDYAREVTEVLRDAGLKVETDLRNEKINYKVREHSLAKVPVII 614

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           + G +   +  V I+   +  +  M LEE +   +  
Sbjct: 615 VCGRREAEERAVNIRRLGSKDQTAMGLEEAVQTLAAE 651


>gi|291613215|ref|YP_003523372.1| prolyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291583327|gb|ADE10985.1| prolyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 566

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 165/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SH+LMLR G I + S G+Y+W+PLG + L  V A++REE
Sbjct: 1   MRVSQFFISTLKEAPSEAELPSHRLMLRAGYIRKLSSGLYTWMPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G IE+ +P +Q A+LW E+GR+D +G +ML++ DR+D    +GPTHEEV+TDI R 
Sbjct: 61  MNKSGGIELLMPAVQPAELWQETGRWDVFGPQMLKIKDRHDNLFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYRQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHSSFESLEQTYRVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  +    +     
Sbjct: 181 YTRIFTRLGLQFRAVAADTGAIGGSGSHEFHVLADSGEDALAFCPNSDYAA 231



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 3/186 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+ N    D+ P+ K      RGIEVGHIF   TKYS  + AT+   +GK   ++MG Y
Sbjct: 381 HDLRNVVAGDASPDGKGALELCRGIEVGHIFQLRTKYSEALQATYLDENGKAQVMEMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE + D +GI  P  +APF++++  I     +  R+A E++YA L+  G
Sbjct: 441 GIGVSRIVAAAIEQNFDERGIALPSGMAPFQVAIAPIGIKKSEAVRNAAEQLYAELTAAG 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P ++++G + + + KVE + R     + + L++ + 
Sbjct: 501 VEVLLDDRDERPGVMFADLELIGVPHRIVIGDRGLKEGKVEYQGRKDETAQSIPLQDAVK 560

Query: 437 YASHRF 442
               + 
Sbjct: 561 LVQSKL 566


>gi|117919846|ref|YP_869038.1| prolyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|152016600|sp|A0KV13|SYP_SHESA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117612178|gb|ABK47632.1| prolyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 570

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS VG DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAVGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            K+R TG ++D+  ++++++  + 
Sbjct: 545 YKNRRTGEKQDVPFDQIVDFLKNL 568


>gi|304439592|ref|ZP_07399496.1| threonine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371904|gb|EFM25506.1| threonine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 647

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 153/447 (34%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   RD      +L L T  +     G   +LP G    + +    R   
Sbjct: 237 QLDEYIERMEEAEKRDHRRIGRELDLFT--MRDEGPGFPFFLPHGMILKNTLLNWWRNVL 294

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG +D Y   M      + +     P +      ++   
Sbjct: 295 LENGYGEIQTPIILNEALWHRSGHWDHYKDNMY-FTKIDGEDYAVKPMNCPGSILVYEEK 353

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP    +     R EL     G+ R R F   DA+ + L PE  K    KM   
Sbjct: 354 AHSYRDLPIRLSEFGQVHRHELSGALHGLFRVRTFTQDDAHVYCL-PEQVKDEVFKMIDL 412

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P     + E   +A+         +               
Sbjct: 413 AELLYSTFGFKY-EIELSTRPDDFMGTIEAWNIAEKNLKDALEERGLK------------ 459

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +I E   A Y    D H E              R  + G I     +       
Sbjct: 460 -----YTINEGDGAFYGPKIDFHLEDAIG----------RTWQCGTI-QLDFRMPENFEL 503

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+  ADG K   V +    +G++     ++     GK  +W   +AP ++ +I +    +
Sbjct: 504 TYINADGEKARPVMLHRALLGSIERFMGILIEHFAGKFPLW---LAPVQVEIIPV---SE 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  E++  +L   G  V  D   E++G +   A L      +++G + V    + I+
Sbjct: 558 KFHDYAEEVKNKLKTSGFRVEMDTRAEKVGYKIRQAQLRKVNYMLVIGEQEVESGLLSIR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R     +D+ +E+ I+         +
Sbjct: 618 KRSGEEVKDVKIEDFISQMKEEVKEKK 644


>gi|254453851|ref|ZP_05067288.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198268257|gb|EDY92527.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 649

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 155/447 (34%), Gaps = 49/447 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + +  + +L+E    A    H+ + R      + + + G   W P G      +   +R 
Sbjct: 233 QLRAHMNMLEE----AAKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWLIYTQLQDYMRR 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVM 114
           +Q   G +E++ P +    LW +SG ++ Y + M  +    D A         P +    
Sbjct: 289 KQRAGGYVEVNTPQVVDRKLWEQSGHWEKYQEHMFVVEVDEDHAREKSVNALKPMNCPCH 348

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             I+   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +  
Sbjct: 349 VLIYNQGLKSYRDLPMRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF-CTEDQIEEE 407

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                     ++  LG ++  ++    P     S E    A+T                P
Sbjct: 408 TLTYIEFLTGVYKDLGFENFKVKFSDRPDTRAGSDEVWDKAETALLAATRKAGIEPELNP 467

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            E   +   +                         D++  + +     ++    F    +
Sbjct: 468 GEGAFYGPKLEFVLT--------------------DAIGRDWQCGTHQVD----FVLPDR 503

Query: 294 YSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
               + A + GADG+ H  V +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 504 ----LDANYIGADGEKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 556

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++ A L   G     D   E+I  +     L   P+ +  G++ V 
Sbjct: 557 SIISD---ADDYVREVVAALQAKGVRAEADIRNEKINYKVREHSLGKVPVILACGAREVE 613

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  V ++          +L  ++    
Sbjct: 614 ERTVSVRRLGDKQTSVTTLAVIVEDLQ 640


>gi|68249330|ref|YP_248442.1| prolyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|229844600|ref|ZP_04464739.1| prolyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|81336245|sp|Q4QMG5|SYP_HAEI8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68057529|gb|AAX87782.1| prolyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|229812314|gb|EEP48004.1| prolyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 572

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFRRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++            D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWVRDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|309783049|ref|ZP_07677768.1| proline--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918157|gb|EFP63835.1| proline--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 574

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYC 224



 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 125/258 (48%), Gaps = 17/258 (6%)

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + P     GPIG  L     V+AD        +    DF + +   D+        + 
Sbjct: 331 FDTRPGYL--GPIGTKLP--VKVVADRT------AAAMSDFVVGANEEDYH----FTGVN 376

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                P     D+ N    D  P+ K      RGIEVGH+F  GT+YS  M+ATF   +G
Sbjct: 377 WGRDLPEPEVYDLRNVVAGDPSPDGKGTLAVCRGIEVGHVFMLGTRYSEAMNATFLDENG 436

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACE 366
           K   + MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +        R+  +
Sbjct: 437 KTQPMVMGCYGIGITRILGAAIEQNYDARGIIWPASIAPFQVVICPVGYDRSDAVREEAD 496

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +++A L   G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E + R     
Sbjct: 497 RLHAELVAAGIDVMLDDRGERPGAMFADWELIGVPFRVVVGDRGLKEGKLEFQGRRDEAA 556

Query: 427 EDMSLEEVINYASHRFSN 444
             ++  +V+     R + 
Sbjct: 557 TAVAPADVLATLKARLAQ 574


>gi|301169449|emb|CBW29049.1| prolyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 572

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 116/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|33861154|ref|NP_892715.1| threonyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|73919818|sp|Q7V287|SYT_PROMP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33639886|emb|CAE19056.1| Threonyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 638

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 160/446 (35%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  ++E    AE   H+ + +      I + S G+  W P G      +   +RE  N+
Sbjct: 231 YLKRIEE----AEKRDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYVREILNK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +E+  P      LW +SG +D + ++M   A  N +     P +      +F   +K
Sbjct: 287 NDYLEIKTPQAVDKSLWEKSGHWDKFREDMFTTASEN-RTYAIKPMNCPCHIQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +       
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIF-CTEEQIQAEVSTFIDLVF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++  + P     S      ++    +   +K       P E   +   
Sbjct: 405 EVYKTFGFDEIIIKLSTRPEKRVGSENIWDKSEEALMKALDNKSLKWVLQPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I  +                            K    R  + G I      +S+P  + A
Sbjct: 465 IEFSL---------------------------KDCLDRVWQCGTI---QVDFSMPIRLDA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +  K + V +    +G+      ++   ++ K  IW   +AP++I L++I   + 
Sbjct: 495 TYIDLNNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIW---LAPYQIILLSITDRN- 550

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C K    ++  G     D   E+IG +   A +   PL  ++G K      V ++
Sbjct: 551 --IEKCLKFNQLINSKGYRSKVDIRNEKIGYKIREATIGRIPLIAVIGDKEEQFDSVALR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
                      L+++    ++     
Sbjct: 609 ALDGKNLGIFKLDDLYKLMNNLIEKK 634


>gi|47575750|ref|NP_001001219.1| threonyl-tRNA synthetase [Xenopus (Silurana) tropicalis]
 gi|301626626|ref|XP_002942489.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
 gi|45709710|gb|AAH67949.1| threonyl-tRNA synthetase-like 2 [Xenopus (Silurana) tropicalis]
          Length = 721

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 156/445 (35%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + + A IR+E  
Sbjct: 304 KMLKEWEKFQEEAKNRDHRKIGREQELFFFHELSPGSCFFLPKGAYIYNQLIAFIRQEYR 363

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG +  Y + M        +     P +      +F    
Sbjct: 364 KRGFQEVVTPNVYNSKLWQTSGHWQHYSENMFSFEVEK-EIFALKPMNCPGHCLMFDHRP 422

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 423 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEEEIKSCLDFL 481

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G     +   + P       E    A+                 P +      
Sbjct: 482 RAVYNVFGFTF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWVLNPGDG----- 535

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 536 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 574

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +      C
Sbjct: 575 SHDGDDKKRPVIIHRAILGSVERMIAILTENFGGK---WPLWLSPQQVMVVPVGP---TC 628

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +++  +  + G     D D G  +  +   A L  +   +++G K  +   V I+ 
Sbjct: 629 DEYAQQVREQFHRAGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTVNIRT 688

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 689 RDNKVHGERTIAETIERLLQLKDSR 713


>gi|172058202|ref|YP_001814662.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|171990723|gb|ACB61645.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 646

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 172/443 (38%), Gaps = 34/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++   + +   RD      +L L         +G+  WLP G      V   I +++   
Sbjct: 234 QHLHFLAEAKERDHRKLGKELDLF-FTSQDVGQGLPMWLPKGAAIRRTVERYIVDKELEL 292

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L S +L+  SG +D Y  +M    + +++ ++  P +      I+++  +S
Sbjct: 293 GYEHVYTPVLGSVELYKTSGHWDHYQDDMFPKMEMDNEELVLRPMNCPHHMMIYKNEPRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++    R E+     G+ R R  ++ D ++F + P+  K  +  +      
Sbjct: 353 YRDLPLRVAELGGMHRYEMSGALTGLQRVRYMVLNDGHTF-VRPDQMKEEFKAIVHLIQE 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G+     R                  D  + + +   D +      E  +  D  
Sbjct: 412 VYADFGITDYKFRLSYR--------------DPADKEKYFDNDAIWEMAQRELKETMD-- 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L     +     A      + ++  +L +++ +S   ++    F    ++      T+K
Sbjct: 456 ELELPYFEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLD----FLLPERF----ELTYK 507

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+DH  V +    +  M    A +   + G    W   +AP ++ LI +     V  
Sbjct: 508 GNDGQDHRPVVLHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQVKLIPV---SSVHE 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I   L K G  V  D   E++G +   A +   P+ +++G K +   +V I+   
Sbjct: 562 DYAREIKTMLLKKGIRVETDFRDEKLGYRIREAQVNKVPVMLVLGDKEIEAREVNIRRYG 621

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +    + SLE+ ++      +N 
Sbjct: 622 SKDSSNASLEQFVSDLEQEIANR 644


>gi|304406649|ref|ZP_07388304.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304344182|gb|EFM10021.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 645

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 166/442 (37%), Gaps = 35/442 (7%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L + T    +  +G+  WLP G +    +   I + + R G 
Sbjct: 235 LHFLEEAKKRDHRKLGRELKMFT-FSREVGQGLPLWLPNGARVRRTMERYIVDLEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M      +++ ++  P +      +++S ++SYR
Sbjct: 294 SHVYTPVLANVELYKISGHWEHYSEDMFPPMALDNEELVLRPMNCPHHMMVYKSDMRSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++     +++
Sbjct: 354 DLPIRVAELGTMHRYEMSGALTGLHRVRAMTLNDAHIF-CRPDQIKEEFARVINLIRQVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+K    R                  D  +T+ +   D M         +  +   L
Sbjct: 413 ADFGIKEYRFRLSYR--------------DPQDTEKYFPDDNMWEMSQRMLREVVE--EL 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L + + +S   ++    F    ++       + G 
Sbjct: 457 ELPFFEAEGEAAFYGPKLDVQIKTALGKEETLSTAQLD----FLLPERF----ELEYVGD 508

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK H   +   GI + M  + A +  +  G   +W   ++P    +I +          
Sbjct: 509 DGKKHRPVVIHRGIISTMERMTAYLLENFAGALPLW---LSPMHARVIPV---SSAYDGY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L   G     D   E++G +   A L   P  +IVG        V ++ R  G
Sbjct: 563 AREVEEKLLAAGVRAESDLRNEKLGYKIREAQLEKLPYMLIVGDNEAQAGTVSVRKRGEG 622

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 + E+I   +   +  +
Sbjct: 623 DIGSKEVSELIALLTEEIATKK 644


>gi|24374667|ref|NP_718710.1| prolyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|81845788|sp|Q8ECI8|SYP_SHEON RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24349306|gb|AAN56154.1|AE015752_11 prolyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 570

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDMDTLNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            K+R TG ++D+  ++++++  + 
Sbjct: 545 YKNRRTGEKQDVPFDQIVDFLKNL 568


>gi|307609489|emb|CBW98986.1| prolyl-tRNA synthetase [Legionella pneumophila 130b]
          Length = 569

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 168/225 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S 
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSTSHEFQVLAESGEDLIFYSD 225



 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 3/198 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +  A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G
Sbjct: 372 WERDAKYDDAYDLRNVKEGDPSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACE 366
           +   + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E
Sbjct: 432 QLQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAE 491

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   
Sbjct: 492 SLYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSET 551

Query: 427 EDMSLEEVINYASHRFSN 444
           + ++L++V+N+     + 
Sbjct: 552 QLINLDKVVNFIIELINK 569


>gi|254462954|ref|ZP_05076370.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206679543|gb|EDZ44030.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 643

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 160/444 (36%), Gaps = 48/444 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIRE 59
           + K  L  L+E    A    H+ + R  G+ H  + + G   W P G +    + A +R 
Sbjct: 232 QLKAHLTFLEE----AAKRDHRKLGREMGLFHFEEVAPGSVIWHPNGWRVFQTLIAYMRR 287

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            Q+  G +E++ P +    LW  SG + +Y + M     ++D+     P +      ++ 
Sbjct: 288 RQDVAGYVEVNTPDIMDRALWETSGHWFNYKENMFLAQTQDDRDYALKPMNCPGHMMVYN 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR+LP    +     R E      G++R R F   DA+ +  +PE       K+ 
Sbjct: 348 HSLRSYRDLPVKIAEFGKVHRYEPSGALHGLLRVRSFTQDDAHIY-CSPEQLTDECLKVN 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I+   G + + ++  + P     S E   L++                   E   
Sbjct: 407 DLILSIYKDFGFEDVHVKLSTRPENRIGSDESWDLSEGALKTALERAGMSYTIFEGEGAF 466

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               +    R  + G        Y+LP 
Sbjct: 467 YGPKLEY---------------------------VLRDAIGRDWQCGT---LQVDYNLPE 496

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              +T+  A G K   V +     G++     ++  + +GK   W   +AP ++ + +I 
Sbjct: 497 RFGSTYVSASGEKLAPVMLHRALFGSLERFIGILIENWEGKLPFW---LAPRQVVVASII 553

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      D   +    L   G     D   E+I  +     +   P+ + +G++ V +  
Sbjct: 554 SD---ADDYVYEAVDALKAAGVQAEADIRNEKINYKVREHSVGKVPVILAIGAREVEERT 610

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           V ++       +  +LE VI+  S
Sbjct: 611 VTVRRLGEKQTKVEALESVISALS 634


>gi|188533062|ref|YP_001906859.1| prolyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|226701287|sp|B2VDZ9|SYP_ERWT9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188028104|emb|CAO95961.1| Prolyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 572

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  +  S
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDIVFS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 114/207 (55%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D    + I  Q   P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGQHFSGINWQRDLPLPRIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +    
Sbjct: 426 KASVQGEDGRNQTLTMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E +Y +L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SFRVKELAEALYQQLRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGERNLDNDEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R  G +  +  +E++++     + 
Sbjct: 546 YKARRGGEKRLIKTDEIVDFLMAELAQ 572


>gi|317060327|ref|ZP_07924812.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686003|gb|EFS22838.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 569

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 61  MDRAGSQELLMPVLQPAELWRESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S       
Sbjct: 181 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYSDGCSYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  SARGIE GHIF  G KYS  + A++    G+   + MG YGIG  R +AA IE ++D
Sbjct: 400 KLHSARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYGIGVGRTMAAAIEQNYD 459

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GIIWP ++AP+ + +I     +       E+IY  L+K   D   DD  E+ G +F  
Sbjct: 460 ENGIIWPTALAPYLVDVIPANIKNTEQMKLAEEIYENLNKEHLDAMIDDRDERPGFKFKD 519

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ADL+GFP ++I G K  +++ VE+K R TG   ++S +EVI      
Sbjct: 520 ADLIGFPFKIICGKK-AAENIVELKIRKTGETLEVSADEVIPTIKEL 565


>gi|315918544|ref|ZP_07914784.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059560|ref|ZP_07924045.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313685236|gb|EFS22071.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313692419|gb|EFS29254.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 569

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 61  MDRAGSQELLMPVLQPAELWQESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S       
Sbjct: 181 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYSDGCSYAA 231



 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  SARGIE GHIF  G KYS  + A++    G+   + MG YGIG  R +AA IE ++D
Sbjct: 400 KLHSARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYGIGVGRTMAAAIEQNYD 459

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GIIWP ++AP+ + +I     +       EKIY +L+    D   DD  E+ G +F  
Sbjct: 460 EHGIIWPSALAPYLVDVIPANIKNAEQMQLAEKIYEQLNAEHLDAMLDDRDERPGFKFKD 519

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ADL+GFP +VI G K  +++ VE+K R TG   ++ ++E+I+     
Sbjct: 520 ADLIGFPFKVICGKK-AAENIVELKIRKTGETFEIPVDEIISKIKDL 565


>gi|325287305|ref|YP_004263095.1| threonyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324322759|gb|ADY30224.1| threonyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 647

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 158/439 (35%), Gaps = 40/439 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           Q   RD      +L L T    +   G+  WLP G    + +   +++ Q + G   +  
Sbjct: 238 QAKQRDHRKLGKELELFT-FSQKVGAGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVT 296

Query: 72  PTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P +   +L+V SG Y  YG++  +     + D+  +  P +     ++F     SY++LP
Sbjct: 297 PHIGQKELYVTSGHYAKYGEDSFQPIKTPKMDEEFLLKPMNCPHHCEVFNFKPHSYKDLP 356

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F +    +R E      G+ R R F   DA+ F  TP+     +  +    L + + L
Sbjct: 357 KRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDQEFKNVIDLSLYVLNSL 415

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G  +   +     +                 +   S +  +    +      +      I
Sbjct: 416 GFTNFKAQVSVRDLN-------------NPDKYIGSVENWEKAENAIINAAKEKGLDYVI 462

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD 306
                A Y    D   +              R  ++G I      Y+LP     T+KG+D
Sbjct: 463 ESGEAAFYGPKLDFMVKDALG----------RNWQLGTI---QVDYNLPERFDLTYKGSD 509

Query: 307 GKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            +DH  V +     G+M    A++     G   +W   + P +  ++ +    +      
Sbjct: 510 NEDHRPVMIHRAPFGSMERFIALLLEHTGGNFPLW---LIPDQAIVLPV---SEKYEKYA 563

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L         D+  E +G +   A++   P  +I+G    + + + ++      
Sbjct: 564 KKVLNSLENDEIRALLDNRNETVGKKIREAEMNKIPFMIIIGENEEATNTISVRKHGGED 623

Query: 426 REDMSLEEVINYASHRFSN 444
              +S+++  +  +   ++
Sbjct: 624 LGSISIKDFSDLVTSEINS 642


>gi|54293678|ref|YP_126093.1| prolyl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|81822437|sp|Q5WYK5|SYP_LEGPL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53753510|emb|CAH14965.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella pneumophila str. Lens]
          Length = 569

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 168/225 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S 
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSD 225



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 3/198 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +  A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G
Sbjct: 372 WERDAKYDDAYDLRNVKEGDPSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACE 366
           +   + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A     ++  E
Sbjct: 432 QLQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSHAVKEQAE 491

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   
Sbjct: 492 SLYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSET 551

Query: 427 EDMSLEEVINYASHRFSN 444
           + ++L++V+N+     + 
Sbjct: 552 QLINLDKVVNFIIELINK 569


>gi|167856063|ref|ZP_02478806.1| prolyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|219871797|ref|YP_002476172.1| prolyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|254782903|sp|B8F7C2|SYP_HAEPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167852812|gb|EDS24083.1| prolyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|219692001|gb|ACL33224.1| prolyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 571

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPLASGMYNWLPTGLRVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q ADLWVES R++ YG E+LR  DR D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGALEVEMPVVQPADLWVESERWEDYGPELLRFKDRGDRPFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P+ A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRPVAADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 117/208 (56%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNINWERDVALPKIADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DG+   + MG YGIG  RVVAA IE  HD +GIIWP D++APF ++++ +  H
Sbjct: 424 KATVQGEDGRPQTMIMGCYGIGVTRVVAAAIEQHHDERGIIWPTDAIAPFTVAVVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E +Y  L   G DV +DD  E+ G  FA  +L+G P  +++G K + + ++
Sbjct: 484 KSESVQTFAEDLYKTLRSQGVDVIFDDRKERPGVMFADMELIGVPHMLVIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG ++ ++ ++++++   R + 
Sbjct: 544 EYKNRRTGEKQMIAKDQLLDFLKGRINQ 571


>gi|145632080|ref|ZP_01787815.1| frataxin-like protein [Haemophilus influenzae 3655]
 gi|144986987|gb|EDJ93517.1| frataxin-like protein [Haemophilus influenzae 3655]
          Length = 572

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|54296718|ref|YP_123087.1| prolyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|81822631|sp|Q5X756|SYP_LEGPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53750503|emb|CAH11897.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella pneumophila str. Paris]
          Length = 569

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 168/225 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S 
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSD 225



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 3/198 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +  A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G
Sbjct: 372 WERDAKYDDAYDLRNVKEGDQSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACE 366
           +   + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E
Sbjct: 432 QLQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQTVKEQAE 491

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   
Sbjct: 492 SLYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSET 551

Query: 427 EDMSLEEVINYASHRFSN 444
           + ++L++V+N+     + 
Sbjct: 552 QLINLDKVVNFIIELINK 569


>gi|300113463|ref|YP_003760038.1| prolyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299539400|gb|ADJ27717.1| prolyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 574

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR   I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGSFIRRLAAGLYTWLPLGLRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPAVQPAELWRETGRWEQYGSELLRFTDRHQRFFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQLKFRDE+RPRFGVMRSREFLMKDAYSF         +Y++M+ +
Sbjct: 121 EIQSYKQLPANFYQIQLKFRDEIRPRFGVMRSREFLMKDAYSFHTDQTSLGQTYHQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R+GL    ++A++G IGG  SHEF VLA +GE  +  S 
Sbjct: 181 YSCIFDRIGLTFRAVQADTGMIGGKTSHEFHVLATSGEDAIAFSD 225



 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 3/211 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            +      +      P   T+D+ N    D  P+ +     ARGIEVGHIF  G KYS  
Sbjct: 362 MEGKHFTGVNWGRDLPEPTTADIRNVVDGDPSPDGEGTLSIARGIEVGHIFQLGKKYSQA 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     G+   + MG YGIG  RVVAA IE +HD  GIIWP  +APF+++L+ I AH
Sbjct: 422 MNATVLDEAGRAINLAMGCYGIGVSRVVAAAIEQNHDEHGIIWPAPIAPFQLALVPINAH 481

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             V  ++  +++Y  L   G +V  DD   + G  FA  DL+G P ++++  + + +S V
Sbjct: 482 KSVRVKEMSDQLYTELQAAGFEVLLDDRQLRPGVIFADMDLIGIPHRLVISERGLENSTV 541

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           E K R  G    + L+  I+    +     P
Sbjct: 542 EYKRRQDGKTCVIQLDNFISGLKDQLKTPIP 572


>gi|256848462|ref|ZP_05553904.1| threonyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714729|gb|EEU29708.1| threonyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 601

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 164/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G   + 
Sbjct: 192 EAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGAAIRRTIERYIIDREVADGYEHVY 249

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG ++ Y  +M    D  D  M+   P +      +++ H++SYR+LP
Sbjct: 250 TPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHLRSYRDLP 309

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 310 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIRSEFAKILKLIMSVYKDF 368

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + + + D M     S      D +SL+  
Sbjct: 369 DITDYSFRLSLR--------------DPKNVKKYYANDEMWEKSQSMLKQAMDDLSLD-- 412

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         T+ G DG+
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYVGKDGQ 464

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   D    D  ++
Sbjct: 465 EHMPVMIHRGVVGTMERFVAYLTEIYKGAFPTW---LAPEQVHIIPVS--DDKHGDYADQ 519

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L      V  D   E++G +   A     P  ++VG   +++  V ++      + 
Sbjct: 520 LGAELRAAKIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEMANGSVSVRKYGEKEQN 579

Query: 428 DMSLEEVINYASHRFSNN 445
            MS ++ ++      ++ 
Sbjct: 580 SMSKQDFMDELLADIASY 597


>gi|268316191|ref|YP_003289910.1| threonyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262333725|gb|ACY47522.1| threonyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 662

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 149/449 (33%), Gaps = 49/449 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L T    +   G+  WLP G    + +   +REEQ R G
Sbjct: 240 YLHRLEEARKRDHRRLGRELELFT-FSQKVGPGLPLWLPRGATLRETLINFLREEQIRRG 298

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHI 122
              +  P +   +L+  SG Y  Y          N    +  +  P +      I+    
Sbjct: 299 YQPVVTPHIARLELYKTSGHYPYYKDSQFPPMIENPETGEGYLLKPMNCPHHIMIYADRP 358

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +    +R E      G+ R R F + DA+ F   P+  K  +  +    
Sbjct: 359 RSYRELPLRLAEFGQVYRYEQTGELSGLTRVRGFTIDDAHIF-CRPDQVKDEFKNVIDLT 417

Query: 182 LRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           L +F  LG      +     P   +       L +  E  +  +   M            
Sbjct: 418 LYVFRSLGFDEFEAQISLRDPNNREKYVGDDELWEQAEQAIREAAAEMGL---------- 467

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP 297
                                   E    +    K        +G  +  GT    Y LP
Sbjct: 468 --------------------QATEELGEAAFYGPKLDFMVRDALGRRWQLGTVQLDYILP 507

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + GAD + H  V +     G++     V+     G   +W   +AP +++++ +
Sbjct: 508 ERFDLYYIGADNQKHRPVMIHRAPFGSLERFIGVLIEHCAGNFPLW---LAPVQVAVLPL 564

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  E +  RL + G  V  D   E IG +   A++   P  +IVG +     
Sbjct: 565 ---SDELNDYAEAVGRRLLEAGFRVEVDTRTETIGYKIRQAEVQKIPYMLIVGRREREAG 621

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V ++    G +   +L+E I        
Sbjct: 622 TVAVRKHGEGDQGPATLDEFIERLRTEIE 650


>gi|145634860|ref|ZP_01790568.1| prolyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268026|gb|EDK08022.1| prolyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 572

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R +G +E +S +++++  + +  N
Sbjct: 544 EYKNRRSGEKEMISKDKLLSVLNEKLGN 571


>gi|91977727|ref|YP_570386.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|91684183|gb|ABE40485.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Rhodopseudomonas palustris BisB5]
          Length = 687

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 146/448 (32%), Gaps = 49/448 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  ++E    AE   H+ + R        +   G+  W   G     ++ A +R     
Sbjct: 263 YLKQIEE----AEKRDHRRLGRELDLFHFQEEGPGVVFWHAKGWSVFQSLVAYMRRRLAG 318

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +D Y + M           + +     P +      IF
Sbjct: 319 -NYDEVNAPQILDKVLWETSGHWDWYRENMFAAQSAGENAEDKRWFALKPMNCPGHVQIF 377

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T         K+
Sbjct: 378 KHGLKSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEAQLAEECLKI 436

Query: 178 FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L  +   G    + ++  + P     + E    A+        +    +     +N
Sbjct: 437 NDLILSTYSDFGFDGELTVKLSTRPDKRVGTDEMWDHAER-----VMATVLSEIKAQGDN 491

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +I             Y                       R  + G        ++L
Sbjct: 492 RIKTEINPGEGAFYGPKFEYVLRDA----------------IGRDWQCGTT---QVDFNL 532

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P    A +  ADG K   V +     G+M     ++     G   +W   +AP ++ +  
Sbjct: 533 PERFGAFYIDADGAKKAPVMVHRAICGSMERFIGILIEHFAGNFPLW---LAPVQLVVAT 589

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      +  +K+ A   + G  V  D   E+I  +     L   P  ++VG K    
Sbjct: 590 ITSEGD---EYAKKVVAAARRAGLRVDIDLRNEKINLKVREHSLAKVPALLVVGRKEAET 646

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V ++   +  +  M+  + I      
Sbjct: 647 HSVSVRRLGSDGQTVMATADAIAALVEE 674


>gi|145637732|ref|ZP_01793384.1| prolyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145269081|gb|EDK09032.1| prolyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 572

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|117925064|ref|YP_865681.1| prolyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|152112926|sp|A0L8I2|SYP_MAGSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117608820|gb|ABK44275.1| prolyl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 576

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A++ SHKLMLR G+I Q   GIY+WLP+G K L  V  I+R+E
Sbjct: 1   MRFSQTLIPTLKEEPSEAQVISHKLMLRAGLIRQLGAGIYTWLPMGLKVLRKVETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P++Q A+LW ESGR+  YGKE+LR+ DR++++  YGPTHEEV++D+ R 
Sbjct: 61  MDRAGAQEVLMPSIQPAELWEESGRWKMYGKELLRITDRHNRSFCYGPTHEEVISDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSFD+       SY  MF +
Sbjct: 121 EIHSYKQLPANFYQIQTKFRDEVRPRFGIMRGREFLMKDAYSFDIDEAALDKSYRLMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF+RL LK  P+ A++G IGG  SHEF VLA +GE  +          
Sbjct: 181 YNKIFNRLDLKFRPVEADTGAIGGASSHEFHVLAQSGEDVIASCTHCQYAA 231



 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 116/250 (46%), Gaps = 9/250 (3%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G +G   + +F                 M      E            +  Q   P    
Sbjct: 331 GYLGAVGAEKFNKPVKILADSALRDVTNMVCGANEEGYHLT------GVNWQRDLPKPEF 384

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+ N +  D  P         +RGIEVGH+F  G KYS  M       DGK+  + MG 
Sbjct: 385 VDLRNVEEGDGCPRCGPGSMELSRGIEVGHVFKLGYKYSEAMGVKVLDEDGKEKPLIMGC 444

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+VAA IE +HD  GIIWP ++APF++ ++ +  ++    +  E+I A+L    
Sbjct: 445 YGIGVSRIVAAAIEQNHDENGIIWPLAIAPFEVEVVVMNPNESDAMEKAEEITAQLQAGQ 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ GS+F  ADLLG P +V+VG +   +   E+K+R +G+ E + +E V+ 
Sbjct: 505 LEVLLDDRDERAGSKFKDADLLGAPYRVLVGGRAFKEGVCEVKNRRSGVVEKIPVESVVE 564

Query: 437 YASHRFSNNR 446
                 +  +
Sbjct: 565 TLLQWLAQEK 574


>gi|161510954|ref|YP_089255.2| prolyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|114152209|sp|Q65QU0|SYP_MANSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 571

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSKYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPSGIRVLEKVKNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVLMPVVQPAELWQESGRWEQYGLELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTKESLQATYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKIADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGQKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D++APF ++++ +  H
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDAIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G +V +DD  E+ G  FA  +L+G P  VI+G K + + ++
Sbjct: 484 KSESVQAYAEELYQTLLAQGVEVIFDDRKERPGVMFADMELIGVPHMVIIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R T  ++ ++ ++++++     +
Sbjct: 544 EYKNRRTSEKQMIAKDQLLDFLKANVN 570


>gi|88705599|ref|ZP_01103309.1| prolyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88700112|gb|EAQ97221.1| prolyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 571

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +   +E P DAEI SH+LMLR G+I + S G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MRSSEFLITTHKETPADAEIISHRLMLRAGLIRKLSSGLYTWMPMGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+++P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDASGALELAMPMVQPAELWEESGRWEQYGPELLRIQDRHQRDFCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K RDE+RPRFGVMR+REFLMKDAYSF       + +Y  M  +
Sbjct: 121 EISSYKQLPLNLYQIQNKVRDEIRPRFGVMRAREFLMKDAYSFHADATSLEATYGVMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL   P+ A+SG IGG+ SHEF VLAD+GE  +  S 
Sbjct: 181 YTRIFERLGLDFRPVMADSGSIGGNTSHEFHVLADSGEDAIAFSD 225



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 108/185 (58%), Gaps = 3/185 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGHIF  GTKYS  M+A      G++  + MG YGIG
Sbjct: 385 RNVVAGDPSPDGKGQLQIRRGIEVGHIFQLGTKYSEAMNARVLDETGRNVTLSMGCYGIG 444

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDV 379
             R+VAA IE +HD +GIIWP ++APF+++++ +  H      +A E ++     +G +V
Sbjct: 445 VSRIVAAAIEQNHDDRGIIWPSAMAPFQLAIVPLNMHKSAAVAEAAETLHQECLALGIEV 504

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +FA  +LLG P ++++G + +++ ++E + R     + ++L E +++ +
Sbjct: 505 LMDDRNERPGVKFADMELLGIPHRIVIGDRSLAEGEIEYQGRRDADSQRVALTEAMSFIT 564

Query: 440 HRFSN 444
            + ++
Sbjct: 565 AQLTS 569


>gi|114046916|ref|YP_737466.1| prolyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|122944801|sp|Q0HWU6|SYP_SHESR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113888358|gb|ABI42409.1| prolyl-tRNA synthetase [Shewanella sp. MR-7]
          Length = 570

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
            D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  
Sbjct: 364 QDDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKS 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H
Sbjct: 424 MNATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E++Y  LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     
Sbjct: 484 KSHRVTDIAEQLYKDLSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           E K+R TG ++D+  ++++++  + 
Sbjct: 544 EYKNRRTGEKQDVPFDQIVDFLKNL 568


>gi|126667243|ref|ZP_01738216.1| prolyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126628188|gb|EAZ98812.1| prolyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 576

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR G+I + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQLMLRAGLIRKLAAGLYTWLPMGLRTLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW ESGR+D YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDRSGAQELLMPAVQPAELWRESGRWDEYGGELLRMNDRHGREFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  F+QIQ KFRDE RPRFGVMR+REF+MKDAYSF +  E    +Y  M  +
Sbjct: 121 ELKSYKQLPANFFQIQTKFRDERRPRFGVMRAREFIMKDAYSFHINAESLDETYQLMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P++A+SG IGG  S EF VLA +GE  +  S
Sbjct: 181 YCAIFDRLGLDYRPVQADSGAIGGSGSQEFHVLASSGEDAIVFS 224



 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 109/196 (55%), Gaps = 3/196 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  Q   P     D+ N    D+ P  +      RGIEVGHIF  G KYS  ++AT    
Sbjct: 377 VNWQRDLPLGRVEDLRNVVEGDASPCGQGTLEIRRGIEVGHIFKLGNKYSKALNATVLDE 436

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           +GK   + MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H      +A
Sbjct: 437 NGKTATIYMGCYGIGVSRIVAASIEQNHDDRGIIWPDAIAPFRVAVVLLNGHKSPTVAEA 496

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+Y +L + G DV  DD  E+ G +FA  +L G P + +V  + +    +E K R   
Sbjct: 497 GEKLYQQLQEAGYDVLLDDRNERPGVKFADMELTGIPHRFVVSDRGLEAGTLEYKGRRDA 556

Query: 425 IREDMSLEEVINYASH 440
            ++D++L + IN+   
Sbjct: 557 DKQDVALADAINFLKS 572


>gi|315659856|ref|ZP_07912715.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315495144|gb|EFU83480.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 638

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +S+  L    E  R+AE  +H+ +   L+  M  + + G+  +L  GQ   + +   +RE
Sbjct: 224 QSQAQLDDYFEFLREAEARNHRKLGKQLKLFMFSEEAPGMPFYLSNGQFVRNQMENFLRE 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            Q +    E+  P + +  LW ESG +D Y + M      ++      P +      IF+
Sbjct: 284 IQLKNDYDEVRTPLMMNQKLWEESGHWDHYHENMY-FTKVDENDYALKPMNCPGHMLIFK 342

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + ++SY++LP    +     R E      G++R R F   DA+ F +     K     + 
Sbjct: 343 NELRSYKDLPLRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIFIMKS-QIKSEVEDIL 401

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I+   G     +   + P       +    A+     V             +   
Sbjct: 402 KLIDYIYSVFGFTY-SIELSTRPEDYLGELKLWNEAEQSLANVLDELGLKYTINEGDG-- 458

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      +  + D+L  + + +   ++    F    K+    
Sbjct: 459 ------------------AFYGPKIDVHIKDALNRSHQCATVQLD----FQMPEKF---- 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+      K+  V +     G++     ++     G   +W   +AP ++++I +  +
Sbjct: 493 DLTYINEQNEKERPVVLHRAIFGSLDRFFGILIEHFKGAFPLW---MAPVQVNIIGVSDN 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +        K++  L      V  DD  E++G +   + +   P  +++G     ++ V 
Sbjct: 550 NTA---YVNKVFEALQNNNIRVVIDDRDEKLGKKIRESQMKKIPYTLVLGDHEQENNVVS 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +       E M ++  I        + 
Sbjct: 607 ARKYSHEDNEVMDIQNFIAQLQEEVESK 634


>gi|113969687|ref|YP_733480.1| prolyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|123130574|sp|Q0HKJ4|SYP_SHESM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113884371|gb|ABI38423.1| prolyl-tRNA synthetase [Shewanella sp. MR-4]
          Length = 570

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
            D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  
Sbjct: 364 QDDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKS 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H
Sbjct: 424 MNATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E++Y  LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     
Sbjct: 484 KSHRVTDIAEQLYKDLSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           E K+R TG ++D+  ++++++  + 
Sbjct: 544 EYKNRRTGEKQDVPFDQIVDFLKNL 568


>gi|145628390|ref|ZP_01784191.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145638474|ref|ZP_01794084.1| prolyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|144980165|gb|EDJ89824.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145272803|gb|EDK12710.1| prolyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309751606|gb|ADO81590.1| Prolyl-tRNA synthetase [Haemophilus influenzae R2866]
 gi|309973773|gb|ADO96974.1| Prolyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 572

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++            D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWVRDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E K+R TG +E +S +++++  + +  N 
Sbjct: 544 EYKNRRTGEKEMISKDQLLSVLNEKLGNR 572


>gi|254487235|ref|ZP_05100440.1| threonyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214044104|gb|EEB84742.1| threonyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 648

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 150/445 (33%), Gaps = 59/445 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 RAHLNMLEE----AAKRDHRKLGREMDLFHMQEEAPGQVFWHPNGWLIYTQLQDYMRRKQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G +E++ P +    LW +SG +D Y   M  +    + A         P +      
Sbjct: 290 RAGGYVEVNTPQVVDRKLWEKSGHWDKYQDHMFIVEVDEEHAREKSVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 IFNQGMKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIF-CREDQIEEETL 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   I+  LG ++  ++    P     S E    A+                 P E
Sbjct: 409 IYIEFLSAIYKDLGFENFKVKFSDRPDTRAGSDEVWDKAEAALLSATRKAGIEPEINPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--- 292
              +   +                                        +G  +  GT   
Sbjct: 469 GAFYGPKLEFVLTDA---------------------------------IGRDWQCGTHQV 495

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            + LP  + ATF G+DG K   V +    +G+      ++   H GK   W   +AP ++
Sbjct: 496 DFVLPERLDATFVGSDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQV 552

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + +I +      D   ++   L+  G     D   E+I  +     +   P+ + VG++
Sbjct: 553 VVASITS---EADDYVREVIETLTAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGAR 609

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEV 434
            V +  V ++          SL +V
Sbjct: 610 EVEEKTVSVRRLGEKQTSVQSLADV 634


>gi|257456688|ref|ZP_05621878.1| threonyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257445881|gb|EEV20934.1| threonyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 586

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 159/443 (35%), Gaps = 50/443 (11%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L        +AE   H+ + R      I + + G   W P G      V   +R++    
Sbjct: 171 LKTYLTMQAEAEKHDHRKIGRELDLFHIEEDNPGEVFWHPNGWTLYLTVQQHVRQKIKED 230

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E++ P +    LW+ SG ++ Y + M  + +   +     P +     +IF+  IKS
Sbjct: 231 GYVEVNTPFVMPQSLWLRSGHWEKYKENMF-ITESEKRMFALKPMNCPGHVEIFKQGIKS 289

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F+  DA+ F  T E       K       
Sbjct: 290 YRDLPLRIAEFGSCTRNEPSGSLHGIMRVRGFVQDDAHIF-CTEEQISSEVCKFCNLLKS 348

Query: 184 IFHRLGLKS--IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           ++   G     I ++  + P            A+    +   +        P E   +  
Sbjct: 349 LYRDFGFDDKAILVKFSTRPEKRVGDDATWDRAENALAEACKAAGLEYEIAPGEGAFYGP 408

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP---- 297
            +    +                               R  + G I      Y LP    
Sbjct: 409 KLEFTLVD---------------------------ALGREWQCGTI---QADYQLPSKDR 438

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           ++A + G D + H  V +    +G++     ++     G     P  ++P +  +I +  
Sbjct: 439 LNAEYIGEDNQKHQPVMLHRAALGSLERFIGILIEQFGGA---LPPWLSPVQAMVIPVAP 495

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              V  +  E+I + L+K G  V  D   +++ ++         P Q++VG K    + V
Sbjct: 496 ---VFNEYAEQIASVLTKAGFRVKADIDTDRMNAKIRKYQEQKIPYQLVVGEKEKQSNSV 552

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++  L G ++ MS++E   +  
Sbjct: 553 TVRL-LKGEQKTMSVDEFAAFLK 574


>gi|15889049|ref|NP_354730.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|22654115|sp|Q8UEL1|SYT_AGRT5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15156846|gb|AAK87515.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 667

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 151/453 (33%), Gaps = 54/453 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + A +R     
Sbjct: 234 YLHVL----AEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRMFQTLTAYMRRRLAN 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
           T   E++ P +    LW  SG +  Y + M  +            + + +     P +  
Sbjct: 290 T-YQEVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTHPDDKEADQRVFALKPMNCP 348

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR +P    +     R E      G+MR R F   DA+ F  T E   
Sbjct: 349 GHVQIFKHGLKSYREMPVRLAEFGNVHRYEASGALHGLMRVRGFTQDDAHVF-CTEEQMA 407

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               ++    L ++   G   I ++  + P     S +    A++   +V  +       
Sbjct: 408 AECLRINDLILSVYEDFGFSEIVVKLSTRPEKRVGSDDLWDRAESVMLEVLKT------- 460

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                    +  S   I         A      E         K    R  + G      
Sbjct: 461 --------IEEQSGGRIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---Q 503

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP    A +   +  K   V +     G+M     ++  +  G   +W    AP +
Sbjct: 504 VDFNLPERFGAFYIDQNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---FAPLQ 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I +      D   ++   L + G  V  D   E+I  +     +   P+ ++ G 
Sbjct: 561 VVVATITSD---ADDYGREVAEALREAGMAVETDFRNEKINYKVREHSVTKVPVIIVCGR 617

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           K   +  V I+   +  +  MSLEE I      
Sbjct: 618 KEAEERTVNIRRLGSQNQTSMSLEEAITSLVDE 650


>gi|312879874|ref|ZP_07739674.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Aminomonas
           paucivorans DSM 12260]
 gi|310783165|gb|EFQ23563.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Aminomonas
           paucivorans DSM 12260]
          Length = 631

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 143/444 (32%), Gaps = 42/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L +  +   + G   + P G   L  +    + E  
Sbjct: 225 LEQHLKRLEEAKQRDHRKLGRELDLFS--LQPEAPGFPFFHPKGMVVLGELVNFWKREHQ 282

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P +    LW  SG +D Y   M      +++     P +      +F+S  
Sbjct: 283 RRGYCEIRTPLILDRALWERSGHWDHYRDNMY-FTTIDERPFAIKPMNCPGGILVFKSST 341

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++    R E      G+MR R F   DA+ +  TP+        +    
Sbjct: 342 RSYRDLPLRMGELGTVHRHERSGVLHGLMRVRCFTQDDAHLY-CTPDQVAQEIAGVIDLM 400

Query: 182 LRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             ++    G     +   + P           LA+    +   +        P +   + 
Sbjct: 401 RYVYKDVFGFPYR-VELSTRPENYMGELSLWNLAEQKLQEALEATGTPYKVNPGDGAFYG 459

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I                               +    R  + G I     +       
Sbjct: 460 PKIDF---------------------------HLEDCIGRTWQCGTI-QLDFQMPEKFDV 491

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG +H  V +     G++     ++   + G    W   +AP +  ++ +     
Sbjct: 492 AYIGPDGAEHRPVMLHRTVFGSLERFLGILIEHYAGAFPYW---LAPVQAKILPVSTD-- 546

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++   L   G     D   E++G +   A L   P  +++G +      V ++
Sbjct: 547 -LLPYAREVEGILQSWGVRTETDTREEKLGRKIRDAQLSKVPYMLVLGGREAESRTVAVR 605

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R+ G    +SLE +       ++
Sbjct: 606 ERVRGDLGSLSLEALKEMLEGEYA 629


>gi|254429307|ref|ZP_05043014.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195476|gb|EDX90435.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 638

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 148/424 (34%), Gaps = 44/424 (10%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R      I Q + G   W P G +   N+   IR +  + G  E+S P 
Sbjct: 239 EAEKRDHRKLAREMGLFHIQQEAVGSMFWHPKGWRMRQNLENYIRGKMEKGGYQEVSTPQ 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG +D YG++M  +   + K M   P +      IF+  I SYR+LP    
Sbjct: 299 MMDRILWEQSGHWDKYGEDMFTVCTHDHKEMAVKPMNCPGHVQIFKQGITSYRDLPIRLG 358

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +    FR+E      G+MR+R F   DA+ F  T E               ++   G  S
Sbjct: 359 EFTTLFRNEAHGALHGLMRARSFSQDDAHIF-CTEEQINEETAGFIKMLREVYEDFGFDS 417

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++    P     S E    A+        S        P E   +   +         
Sbjct: 418 FRIKFSDRPDNRAGSDETWDKAEGALRSAVESLGLECELNPGEGAFYGPKLEF------- 470

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KD 309
                                 +    R  + G        + LP  + A +   DG + 
Sbjct: 471 --------------------VLRDAIGRDWQCGT---LQVDFVLPDRLDAEYVAEDGSRQ 507

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++     ++  S  G   +W   +AP  +++  I        +    + 
Sbjct: 508 RPVMLHRAVLGSLERFLGILIESTAGHLPLW---LAPRPVAICTITNS---ADEYATAVQ 561

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G     D   E+IG +         P   ++G +    ++V I+   +   E M
Sbjct: 562 QKLVAAGVPAELDIRNEKIGFKVREHSRAKTPRIWVIGEQEAQQNQVAIRTLGSQATETM 621

Query: 430 SLEE 433
            L+E
Sbjct: 622 DLDE 625


>gi|93355883|gb|ABF09972.1| prolyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 614

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 42  MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 101

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI R+
Sbjct: 102 MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIART 161

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 162 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDIDGLKASYQNMYDA 221

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 222 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 265



 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 7/202 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF   + + D+        +      P  A +D+ N    D+ P+ K      RGI
Sbjct: 396 ANMSDFCCGANDRDYH----YTGVNWGRDLPEPAVADLRNVVAGDASPDGKGTLDICRGI 451

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GT+YS  M+ATF   +GK   +QMG YGIG  R++ A IE ++D +GIIWP 
Sbjct: 452 EVGHVFMLGTRYSESMNATFLDENGKTQPMQMGCYGIGVTRILGAAIEQNYDERGIIWPA 511

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF + +  +    ++  +   ++I+A L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 512 AIAPFAVVVCPVGYDRNEAVKAEADRIHAELLAAGVDVILDDRGERPGVMFADWELIGVP 571

Query: 402 LQVIVGSKFVSDSKVEIKHRLT 423
            +V+VG + + + KVE + R  
Sbjct: 572 HRVVVGDRGLKEGKVEYQGRRD 593


>gi|113869200|ref|YP_727689.1| prolyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123133602|sp|Q0K6Q0|SYP_RALEH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113527976|emb|CAJ94321.1| Prolyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 573

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPIGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G + SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDTDGLRKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFRRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 7/223 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF   +   D+        +      P    +D+ N    D+ P+ +      RGI
Sbjct: 355 ANMSDFVCGANYRDYH----YTGVNWGRDLPEPVVADLRNVVAGDASPDGQGTLEICRGI 410

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GT+YS  M+ATF   +GK   +QMG YGIG  R++ A IE + D +GIIWP 
Sbjct: 411 EVGHVFMLGTRYSESMNATFLDENGKTQPMQMGCYGIGVTRILGAAIEQNFDERGIIWPA 470

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF + +  +     +  +   ++I+A L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 471 AIAPFAVVICPVGYDRSEAVKAEADRIHAELLAAGVDVILDDRGERPGVMFADWELIGVP 530

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V+VG + + + KVE + R       +S+ +V+ +   + +N
Sbjct: 531 HRVVVGDRGLKEGKVEYQGRRDAQATAVSVADVVGHVRSQLAN 573


>gi|116492462|ref|YP_804197.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122266074|sp|Q03GB7|SYT_PEDPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116102612|gb|ABJ67755.1| Ser-tRNA(Thr) hydrolase [Pediococcus pentosaceus ATCC 25745]
          Length = 648

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 164/445 (36%), Gaps = 37/445 (8%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L    E  ++A    H+++   L    +  +   G+  W+P G     ++   I +++ +
Sbjct: 229 LEAELERQKEAHERDHRVIGNNLDLFFVDPKVGAGLPYWMPNGATIRRSIERYIIDKEVK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHI 122
            G   +  P L + D +  SG +  Y ++M    D  D  M+   P +      +++ HI
Sbjct: 289 HGYQHVYTPVLMNLDAYKTSGHWQHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHI 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    ++ +  R E      G+ R RE  + D ++F   P+  +  + K+    
Sbjct: 349 RSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-PDQIQAEFKKVLQLM 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T+ +   D M     S      D
Sbjct: 408 VEVYRDFNITDYTFRLSYR--------------DPANTEKYFDDDEMWNKSQSMLKAAMD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+ +        A      + +   +L   + +S   ++                  
Sbjct: 454 DLGLDYVEA--EGEAAFYGPKLDVQTKTALGNEETLSTIQLDFMLPKQ--------FDLH 503

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG++H   M   G+ +      A +   + G    W   +AP ++++I +K  D +
Sbjct: 504 YVGADGEEHRPVMIHRGLVSTMERFTAYLIEMYKGAFPTW---LAPKQVTIIPVK--DDL 558

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +K+   +      V  D   E++G +   A     P  ++VG   + ++ V ++H
Sbjct: 559 HGAYADKLREEMVDKDIRVEVDHRNEKMGYKIREAQTQKIPYILVVGDNELENNSVSVRH 618

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 ++ +  + IN       + 
Sbjct: 619 YGEDDSKNEASADFINNIVREIESY 643


>gi|238897616|ref|YP_002923295.1| proline tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259511602|sp|C4K3K4|SYP_HAMD5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|229465373|gb|ACQ67147.1| proline tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 579

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTTQYLLSTLKELPADAEIISHQLMLRAGMIRKLASGLYTWLPTGTRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ES R++ YG E+LR ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAIEVVMPIVQPADLWQESERWEHYGPELLRFADRSERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFG+MR+REFLMKDAYSF  T E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEIRPRFGIMRAREFLMKDAYSFHNTLESLQETYQTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+ L    ++A++G IGG  SHEF VLAD+GE ++  S
Sbjct: 181 YTKIFERMQLNFRAVQADTGSIGGSRSHEFQVLADSGEDEIVFS 224



 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 70/210 (33%), Positives = 117/210 (55%), Gaps = 5/210 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           +      I  +   P     D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 EDQHYFGINWERDLPLPIIEDLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
            A  +G +G+   + MG YGIG  R+VAA IE  HD  GI+WP+++APF+++++ I    
Sbjct: 426 GAKVQGENGRQQMMIMGCYGIGVSRLVAAAIEQHHDQHGILWPEAIAPFQVAILPIHLKK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R   E++YA LS +G DV +DD  E+ G  FA  +L+G P  +I+G + + ++++E
Sbjct: 486 SDAVRQEAERLYAELSSLGMDVIFDDRQERPGVMFADMELIGIPHTLIIGDRDLENNELE 545

Query: 418 IKHR--LTGIREDMSLEEVINYASHRFSNN 445
            ++R      ++ + + +V+++   + +++
Sbjct: 546 YRYRGIDDHKKQQLKISDVVSFLLEKINSH 575


>gi|228475159|ref|ZP_04059885.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270770|gb|EEK12172.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 645

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 156/415 (37%), Gaps = 33/415 (7%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G+  WLP G      +   I +++   G   +  P L + +L+  SG +D Y  +M 
Sbjct: 259 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELYKTSGHWDHYRDDMF 318

Query: 95  RLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++ + M+  P +      ++ +   SYR LP    ++    R E      G+ R 
Sbjct: 319 PPMKLDETEEMVLRPMNCPHHMMVYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRV 378

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R   + D++ F + P+  K  + ++      ++   G +    R                
Sbjct: 379 RGMTLNDSHIF-VRPDQIKDEFKRVVHMIQDVYEDFGFEDYTFRLSYR------------ 425

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  + + +   D M     S   +  D + L  +     A  A      + ++  ++ 
Sbjct: 426 --DPEDKEKYMDDDDMWNKAESMLKEAVDEMGLPYVEAIGEA--AFYGPKLDVQVKTAMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM-RVVAAVIES 331
           + + +S   ++    F    ++      ++ G+DG++H   +   G+ +      A +  
Sbjct: 482 KEETLSTAQLD----FLLPERF----DLSYIGSDGENHRPVVIHRGVVSTMERFVAFLTE 533

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              G    W   +AP ++ +I +     +  D    +   L   G  V  DD  E++G +
Sbjct: 534 ETKGAFPTW---LAPKQVEIIPVNV--DLHYDYARNLQDELKSQGVRVEIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              A +   P Q++VG K V +++V ++   +  +E +  +E I          R
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNEVNVRKYGSQDQETIERDEFIWNLVDEIRLKR 643


>gi|73542636|ref|YP_297156.1| prolyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|114152236|sp|Q46X21|SYP_RALEJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72120049|gb|AAZ62312.1| Prolyl-tRNA synthetase, bacterial [Ralstonia eutropha JMP134]
          Length = 573

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
                        +      P    +D+ N    D+ P+ K      RGIEVGH+F  GT
Sbjct: 361 CCGANYRDYHFTGVNWGRDLPEPIVADLRNVVAGDASPDGKGTLEICRGIEVGHVFMLGT 420

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +YS  M+ATF   +GK   +QMG YGIG  R++ A IE + D +GIIWP ++APF++ + 
Sbjct: 421 RYSESMNATFLDENGKTQPMQMGCYGIGVTRILGAAIEQNFDERGIIWPAAIAPFEVVVC 480

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  +   ++I+A L   G DV  DD GE+ G  FA  +L+G P +V+VG + +
Sbjct: 481 PVGYDRSEAVKAEADRIHAELLAAGVDVIIDDRGERPGVMFADWELIGVPHRVVVGDRGL 540

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + KVE + R       +++ +V+ +   + 
Sbjct: 541 KEGKVEYQGRRDAQATQVAVADVVGHVRGQI 571


>gi|253583421|ref|ZP_04860619.1| proline-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251833993|gb|EES62556.1| proline-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 569

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AE ASHKL+LR GMI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MRFSKSYIKTLKETPKEAETASHKLLLRAGMIKKLTSGVYTYLPLGYKALRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G+ E+ +P LQ A+LW ESGR+D  G  M++L DRN +  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGSQEILMPVLQPAELWKESGRWDVMGPLMMKLQDRNKRDFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP + YQIQ KFRDE+RPRFG+MR REF+MKD YSF  T E     +  M  +
Sbjct: 121 DISSYKSLPLSLYQIQTKFRDEIRPRFGLMRGREFVMKDGYSFHATVESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLAD+GE ++          
Sbjct: 181 YSRIFSRCGLKFRPVEADSGAIGGSGSQEFHVLADSGEDEIIYCDSCSYAA 231



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 1/177 (0%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                 K  SARGIEVGHIF  G KYS  M+ATF    G+   + MG YGIG  R +A+ 
Sbjct: 394 CERCGGKLHSARGIEVGHIFKLGDKYSKAMNATFLDDKGESKVMIMGCYGIGVSRTLASA 453

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE ++D  GIIWP ++AP+ + +I     ++      E+IY  L   G +   DD  E+ 
Sbjct: 454 IEQNNDEFGIIWPTALAPYIVDVIPANIKNEEQVKVAEEIYEALLNDGIEAMIDDRDERP 513

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G +F  ADL+GFP +V+ G K   +  VE+K R TG   ++S ++V++         
Sbjct: 514 GFKFKDADLIGFPFKVVSGKK-AGEGIVELKIRRTGETIELSKDDVVSTVRELMKKY 569


>gi|52308170|gb|AAU38670.1| ProS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 589

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 19  MRTSKYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPSGIRVLEKVKNIIREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 79  MNKSGAIEVLMPVVQPAELWQESGRWEQYGLELLRFNDRGNRDFVLGPTHEEVITDLVRR 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 139 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTKESLQATYDVMYQT 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 199 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 242



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 382 DGKHYFNINWERDVALPKIADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGQKYSEAM 441

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D++APF ++++ +  H
Sbjct: 442 NATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDAIAPFTVAIVPMNMH 501

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G +V +DD  E+ G  FA  +L+G P  VI+G K + + ++
Sbjct: 502 KSESVQAYAEELYQTLLAQGVEVIFDDRKERPGVMFADMELIGVPHMVIIGEKNLENGEI 561

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R T  ++ ++ ++++++     +
Sbjct: 562 EYKNRRTSEKQMIAKDQLLDFLKANVN 588


>gi|119899055|ref|YP_934268.1| prolyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|152074747|sp|A1K976|SYP_AZOSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119671468|emb|CAL95381.1| unnamed protein product [Azoarcus sp. BH72]
          Length = 581

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+  L+E P DAE+ S KLMLR GMI + + GIY++LP+G K++  V  IIREE
Sbjct: 1   MRARQFFISTLKEAPADAEVVSQKLMLRAGMIRKVAAGIYNYLPMGLKSIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q ++LW E+GR+D  G EMLR  DR+++     PT EEV+TDI R 
Sbjct: 61  MNRAGALELTMPLVQPSELWQETGRWDKMGPEMLRFKDRHERDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ M+ +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSAEAAGESYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE  +   
Sbjct: 181 YSRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYC 224



 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 3/227 (1%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV-- 277
           +V   +   +        + +D     +   +        +D+ N    D  P+ K    
Sbjct: 354 KVIADRTVANMADFVCGANAEDFHYTGANWGRDLPEPDLVADIRNVVEGDPSPDGKGKLA 413

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVGH+FY GTKYS  M+ATF   DGK  + +MG YGIG  R++ A IE +HD +G
Sbjct: 414 IQRGIEVGHVFYLGTKYSKAMNATFLDVDGKPKHFEMGCYGIGVTRILGAAIEQNHDERG 473

Query: 338 IIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IIWP S+APF++ +  +  +  +  RD  +K+Y  L   G DV  DD  E+ G  FA  +
Sbjct: 474 IIWPASIAPFEVVICPVGWSKSEAVRDEAQKLYDALVAAGVDVILDDRDERPGVMFADWE 533

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           L+G P +V +G + + +   E + R       +++ E+  +   R  
Sbjct: 534 LIGVPHRVTIGDRGLKEGVAEYQGRRDPEASRVAVAEIAPHLISRLR 580


>gi|81301415|ref|YP_401623.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|123769177|sp|Q31JY3|SYT_SYNE7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81170296|gb|ABB58636.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           elongatus PCC 7942]
          Length = 604

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 166/449 (36%), Gaps = 45/449 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G   + 
Sbjct: 191 EEALKRDHRKLGRELGLFL-FADPVGPGLPLWTPKGTILRSTLEDFLKQEQMKRGYQSVV 249

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P L   DL+  SG + +Y ++M  +   +D+A       +  P +      I+++ ++S
Sbjct: 250 TPHLARVDLFKVSGHWQNYREDMFPMMAEDDEARGLEQGFVLKPMNCPFHIQIYKNELRS 309

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F + P+     +  +    L 
Sbjct: 310 YRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VRPDQLASEFLSVVDLILS 368

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  L LK    R        D       + +  E+ +                  + + 
Sbjct: 369 VFKALNLKKFKARLSFRDPESDKYIGSDDVWEKAESAI--------------QAAAETLG 414

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
               I     A Y    D   +   D          R  ++G +      Y+LP      
Sbjct: 415 MDYFIGVGEAAFYGPKLDFIFQDALD----------REWQLGTV---QVDYNLPERFDLE 461

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V +     G++  +  ++   + G   +W   +AP +I L+ +    + 
Sbjct: 462 YVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPEQIRLLPVT---ET 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D C+++  +L  +G  V  D  G+++G     A+    P+  ++G++      + I+ 
Sbjct: 516 VLDYCQQVADQLRAIGVRVQVDCSGDRLGKLIRNAEKAKIPVMAVIGAQEAESETLSIRT 575

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R TG    +++ ++    S   +   P L
Sbjct: 576 RATGDLGSLTVADLTKRLSSAIAEKLPHL 604


>gi|310779473|ref|YP_003967806.1| threonyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748796|gb|ADO83458.1| threonyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 640

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 163/446 (36%), Gaps = 46/446 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L  L+E   RD      +L L    + ++  G   ++P G    + +  + R+E
Sbjct: 226 KKLKAHLKFLEEAEKRDHRKIGKELGLF--FMSEYGPGFPFFMPKGMTIRNILIDLWRKE 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++  P + + +LW  SG + +Y + M   ++ ++      P +       ++ 
Sbjct: 284 HTKAGYEQIMTPIMLNKELWETSGHWYNYRENMYT-SEIDETEFAIKPMNCPGGVLAYKQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SY++LP    ++    R E      G+MR R F   DA+ F +TPE  +     +  
Sbjct: 343 EMHSYKDLPIRAGELGTVHRHEFSGALHGLMRVRSFTQDDAHIF-MTPEQIEDEIIGVIE 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              + +  L      +   + P     S E    A++                P +   +
Sbjct: 402 LIDKFYSGLFGFEYNIELSTKPEKAIGSDEIWEKAESALEGAMKRLGKEYKINPGDGAFY 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              +                               K    R  + G I      ++LP  
Sbjct: 462 GPKLDFK---------------------------IKDAIGRTWQCGTI---QLDFNLPER 491

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ I  
Sbjct: 492 FDINYIGEDGEKHRPVMIHRVVYGSIERFIGILIEHYAGAFPLW---IAPTQVKILTIN- 547

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSK 415
                    ++I A+L +       D   E IG +   A+     P+QVI+G   V++ +
Sbjct: 548 --DEVVPYAKEIMAKLQEEEIRAEIDSRTESIGYKIREANGKFKVPVQVILGKDEVANRE 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++   +  +E M L++ +      
Sbjct: 606 VNVRRFGSKDQESMKLDDFVKMIKEE 631


>gi|333029961|ref|ZP_08458022.1| threonyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332740558|gb|EGJ71040.1| threonyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 647

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 162/451 (35%), Gaps = 45/451 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQ-HSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L    E   +A+   H+ + +     M  +   KG+  WLP G      +   +++ 
Sbjct: 226 KKLLTEYLEMMEEAKKRDHRKIGKEMELFMFSETVGKGLPMWLPKGTALRLRLEDFLKKI 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q   G  ++  P + +  L+V SG Y  YGK+  +        +  +  P +     +I+
Sbjct: 286 QKEFGYEQVITPHIGNKLLYVTSGHYAKYGKDSFQPIHTPEEGEEYLLKPMNCPHHCEIY 345

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   +SYR LP    +    +R E      G+ R R F   DA+ F   P+  K  +  +
Sbjct: 346 KWTPRSYRELPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKEEFLSV 404

Query: 178 FVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                 IF  L  ++   +     P+  +         +  E  +  +            
Sbjct: 405 MDIIFIIFKALNFENFEAQISLRDPVNREKYIGSDENWEKAENAIVEACKEKGLKAK--- 461

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      +  + D+L        R  ++G I      Y+L
Sbjct: 462 --------------IEYGEAAFYGPKLDFMVRDALG-------RKWQLGTI---QVDYNL 497

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P   +  + GAD  K   V +     G+M    AV+     GK  +W   + P +++++ 
Sbjct: 498 PERFNLEYTGADNLKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQVAILP 554

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +   D   ++   L K       DD  E+IG +    ++   P  +IVG K   +
Sbjct: 555 I---SERFNDYAHEVKKYLDKNDIRASVDDRNEKIGRKIRDNEVKRIPYMLIVGEKEAEN 611

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V ++ +  G +  + LE+     +    N
Sbjct: 612 REVSVRKQGEGDQGVIKLEDFAKKLNEEVQN 642


>gi|56751513|ref|YP_172214.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|73919835|sp|Q5N1X6|SYT_SYNP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56686472|dbj|BAD79694.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 607

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 166/449 (36%), Gaps = 45/449 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G   + 
Sbjct: 194 EEALKRDHRKLGRELGLFL-FADPVGPGLPLWTPKGTILRSTLEDFLKQEQMKRGYQSVV 252

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P L   DL+  SG + +Y ++M  +   +D+A       +  P +      I+++ ++S
Sbjct: 253 TPHLARVDLFKVSGHWQNYREDMFPMMAEDDEARGLEQGFVLKPMNCPFHIQIYKNELRS 312

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F + P+     +  +    L 
Sbjct: 313 YRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VRPDQLASEFLSVVDLILS 371

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  L LK    R        D       + +  E+ +                  + + 
Sbjct: 372 VFKALNLKKFKARLSFRDPESDKYIGSDDVWEKAESAI--------------QAAAETLG 417

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
               I     A Y    D   +   D          R  ++G +      Y+LP      
Sbjct: 418 MDYFIGVGEAAFYGPKLDFIFQDALD----------REWQLGTV---QVDYNLPERFDLE 464

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V +     G++  +  ++   + G   +W   +AP +I L+ +    + 
Sbjct: 465 YVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPEQIRLLPVT---ET 518

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D C+++  +L  +G  V  D  G+++G     A+    P+  ++G++      + I+ 
Sbjct: 519 VLDYCQQVADQLRAIGVRVQVDCSGDRLGKLIRNAEKAKIPVMAVIGAQEAESETLSIRT 578

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R TG    +++ ++    S   +   P L
Sbjct: 579 RATGDLGSLTVADLTKRLSSAIAEKLPHL 607


>gi|189461814|ref|ZP_03010599.1| hypothetical protein BACCOP_02480 [Bacteroides coprocola DSM 17136]
 gi|189431408|gb|EDV00393.1| hypothetical protein BACCOP_02480 [Bacteroides coprocola DSM 17136]
          Length = 646

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 161/456 (35%), Gaps = 53/456 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQ-HSKGIYSWLPLGQKALDNVNAII 57
           +    +L +L+E    A+   H+ + +     M      KG+  WLP G      +   +
Sbjct: 226 KMLDEYLALLEE----AKKRDHRKIGKEMDLFMFSDTVGKGLPMWLPKGTALRIRLQDFL 281

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMT 115
           R  Q R    E+  P + +  L+V SG Y  YGK+  +        +     P +     
Sbjct: 282 RRIQARYDYQEVMCPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHC 341

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+++  +SYR+LP    +     R E      G+ R R F   DA+ F   P+  K  +
Sbjct: 342 MIYKNTPRSYRDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEF 400

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            ++      +F  +GL++   +                  D    + +   D        
Sbjct: 401 LRVMDIISIVFKSMGLENFEAQISLR--------------DKVNREKYIGSDENWEKAEQ 446

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-- 292
              +  +                       E    +    K        +G  +  GT  
Sbjct: 447 AIVEACEEKG---------------LKAKVEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQ 491

Query: 293 -KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + P +
Sbjct: 492 VDYNLPERFQLEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQ 548

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ I    +   D   ++   L K       DD  E+IG +    ++   P  +IVG 
Sbjct: 549 VAILPI---SEKFNDYANQVRLELKKSDIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGE 605

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           K   + +V ++ +  G +  M +E+     +    N
Sbjct: 606 KEAENGEVAVRKQGEGDKGTMKIEDFAKNVAEEVHN 641


>gi|161723258|ref|YP_094730.2| prolyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|114152207|sp|Q5ZXN7|SYP_LEGPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 569

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 168/225 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S 
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSD 225



 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 3/198 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +  A Y    D+ N K  D  P+ K      RGIEVGH+F  G KY+  M+A+     G
Sbjct: 372 WERDAKYDDAYDLRNVKEGDPSPDGKGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACE 366
           +   + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E
Sbjct: 432 QLQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAE 491

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    VE K R++   
Sbjct: 492 SLYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCVEYKARISSET 551

Query: 427 EDMSLEEVINYASHRFSN 444
           + ++L++V+N+     + 
Sbjct: 552 QLINLDKVVNFIIELINK 569


>gi|15807075|ref|NP_295804.1| threonyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|22654147|sp|Q9RSP3|SYT_DEIRA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6459875|gb|AAF11630.1|AE002044_3 threonyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 649

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 162/451 (35%), Gaps = 44/451 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L T  I     KG+  WLP G    + +   ++E+Q
Sbjct: 234 LDEYLFQLEEAKRRDHRKLGKELELFT--IDPLVGKGLPLWLPNGTVLREELTNFMKEQQ 291

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P + + DL+  SG Y  Y +        +++  +  P +      I+ S 
Sbjct: 292 FQRGYQGVVTPNIGNLDLYRTSGHYPYYSESQFNPIQVDEEEYMLKPMNCPHHVRIYASK 351

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  +  +   
Sbjct: 352 PRSYRDLPVRLAEFGTVYRYEQSGELNGLTRVRGFTQDDAHIF-CRPDQLKREFLDVLDL 410

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +    G+  +  R        D            E Q+  + + +  P         
Sbjct: 411 TVLVLKTFGMTDVRFRVGVRDPESDKYVGDEQNWALAERQIIEAVEEVGLP--------- 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                          Y                  K V  R  ++G I      Y+LP   
Sbjct: 462 ---------------YTIEPGDAAFYGPKLDFVVKDVLGREWQLGTI---QVDYNLPERF 503

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             ++ G DG++H  + +     G++     ++   + G   +W   +AP ++ +I I   
Sbjct: 504 DISYTGEDGQEHRPIMIHRAPFGSIERFTGILIEHYAGDFPLW---LAPRQVMIIPIA-- 558

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   E++   L + G     DD   ++ ++   A+L   P+ +IVG K     +V 
Sbjct: 559 -DRHNAYAEELREELHRAGLRAEVDDSSNRMQAKVRDAELHKIPVMLIVGDKEQEAREVS 617

Query: 418 IKHR---LTGIREDMSLEEVINYASHRFSNN 445
           ++ R    T  R+ +  +E+      R  N 
Sbjct: 618 VRERTGEGTKERKGVKFDELKAELLERRKNR 648


>gi|312623109|ref|YP_004024722.1| prolyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203576|gb|ADQ46903.1| prolyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 572

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 163/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDKSGAQEVHMSALMPKELWEESGRWAVFGPEMFRVKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDVDEKGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           + I  N  +++    Y        E
Sbjct: 241 EPIENNEELKEKQEVYTPNVRTIEE 265



 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 3/223 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +  TD+   I   ++ +     +A   ++  + L       K    RGIEV
Sbjct: 349 KYLKNFVVGANKTDYH--IKNVNLSDFKVTKFADLRNITQDDLCPKCCSQKVTIERGIEV 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKY+   +  +    G+   + MG YGIG  R  AA+IE  HD  GIIWP +V
Sbjct: 407 GHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCYGIGINRTAAAIIEQMHDEDGIIWPITV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +   D+       +IY  L + G +V  DD  E+ G +F  ADL+G P +V
Sbjct: 467 APYEVIIVPVNVKDENQNRIAFEIYENLQRNGVEVLIDDRDERAGVKFKDADLIGIPFRV 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            VG K +S+ K+EI++R T    ++ +E+ I    +     + 
Sbjct: 527 TVGKK-ISEGKLEIRNRRTKESFEVEIEKAIEVVINLIREEKA 568


>gi|146297790|ref|YP_001192381.1| threonyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|189083608|sp|A5FP01|SYT_FLAJO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146152208|gb|ABQ03062.1| threonyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 648

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 160/445 (35%), Gaps = 42/445 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +  +G+  WLP G    D +   ++  Q + G  ++  P
Sbjct: 236 AKRRDHRKLGKELELFA-FSQKVGQGLPLWLPKGAALRDRLEQFLKRAQKKAGYEQVVSP 294

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG +  +        +  +  P +     +I+     SY++LP 
Sbjct: 295 HIGQKELYVTSGHYAKYGADSFQPIHTPAEGEEFLLKPMNCPHHCEIYNVRPWSYKDLPK 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    +R E      G+ R R F   DA+ F  TPE     + K+    L +F  LG
Sbjct: 355 RYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQLDEEFKKVIDLVLYVFGSLG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                  D  + + +   D       +   +      LN++V
Sbjct: 414 FENFTAQISLR--------------DQEDREKYIGTDENWEKAENAIINAAKDKGLNTVV 459

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
           E   A +                  K    R  ++G I      Y+LP     T+KGAD 
Sbjct: 460 EYGEAAFYGPKLDF---------MVKDALGRQWQLGTI---QVDYNLPERFELTYKGADN 507

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    A++     G   +W   + P +  ++++    +   +  +
Sbjct: 508 ELHRPVMIHRAPFGSMERFIAILLEHTAGNFPLW---LMPEQAIILSL---SEKYENYAK 561

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L         D+  E IG +   A++   P  +IVG +   +  + I+      +
Sbjct: 562 KVLDLLENHEIRALIDNRNETIGKKIRDAEMQKIPFMLIVGEEEEKNGTISIRRHGQEGK 621

Query: 427 E--DMSLEEVINYASHRFSNNRPVL 449
               +S+EE  +           V 
Sbjct: 622 GNITVSIEEFASIVDEEIKKTLKVF 646


>gi|262067494|ref|ZP_06027106.1| threonine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291378856|gb|EFE86374.1| threonine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 637

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 167/445 (37%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    I ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKFMEEAEKRDHRKLGKELELF--FISEYGPGFPFFLPKGMVFRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E   +A++                P +   + 
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGDGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      ++LP   
Sbjct: 462 PKLDFK---------------------------IKDAIGRMWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ +   
Sbjct: 492 DVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTLN-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKV 416
              C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V
Sbjct: 547 -DECIPYAKEIMDKLQELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKEV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +   SL+E  +Y    
Sbjct: 606 NIRRFGSKDQFPKSLDEFYDYVVDE 630


>gi|323701857|ref|ZP_08113527.1| prolyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323533161|gb|EGB23030.1| prolyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 568

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SH+L+LR G I + + GIY++LPL Q+ L  +  I+REE
Sbjct: 1   MRTSQMLMPTLREVPAEAEVVSHQLLLRAGFIRKSASGIYTYLPLAQRVLKKIKEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +P +Q A++W+ESGR+  YG E+ RL DR+++    GPTHEEV+T + R 
Sbjct: 61  MDKQGGQELLMPIVQPAEMWLESGRWHVYGPELFRLKDRHNRDFCLGPTHEEVITILVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P   YQIQ KFRDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EVRSYKQMPLLLYQIQNKFRDERRPRFGLMRGREFIMKDLYSFDRDEAGLDISYQKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F+R GLK  P+ A+SG IGG  +HEF+VLAD+GE  +          
Sbjct: 181 YTNVFNRCGLKFRPVEADSGAIGGSDTHEFMVLADSGEAAILFCSQCDYAA 231



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 104/175 (59%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                 +   ARGIEVG IF  GTKYS  + ATF   +GK+  + MG YGIG  R +AA 
Sbjct: 392 CPKCGAELQQARGIEVGQIFKLGTKYSKALGATFLDENGKEKPIVMGCYGIGVSRTMAAA 451

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE +HD  GIIWP S+AP+   +I + A D+      E +Y +L+++G +   DD  E+ 
Sbjct: 452 IEQNHDQDGIIWPASIAPYHAIVIPVSAKDEKQMQLAESLYNKLNQIGVETVLDDRAERP 511

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G +F  ADL+G+PL+++VG+K ++D  VE++ R +G  + + L+++        +
Sbjct: 512 GVKFKDADLIGYPLRIVVGNKAMTDGLVEVRQRKSGQTDLIPLDQIPEKVKEILA 566


>gi|257094575|ref|YP_003168216.1| prolyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047099|gb|ACV36287.1| prolyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 574

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LMLR GMI + + GIY+W+P+G + +  V  I+REE
Sbjct: 1   MRTSRFFLSTLKEAPSDAEIISHQLMLRAGMIKRLAGGIYTWMPIGLRVMRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAIELSMPAVQPAELWQESGRWEKYGPELLRCKDRHQRDFVIGPTHEEVITDVVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQ+Q+KFRDE+RPRFGVMR REFLMKD YSF    E  +  Y  MF +
Sbjct: 121 EVKSYRQLPLHFYQVQVKFRDEIRPRFGVMRGREFLMKDGYSFHSGFEDLQREYRNMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  +   
Sbjct: 181 YTRIFTRLGLQFRAVAADTGAIGGTGSHEFHVLADSGEDALAYC 224



 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 3/183 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ +      RGIEVGHIF   T+Y+  +  TF    G+   ++MG YGIG
Sbjct: 389 RNVVAGDPSPDGRGTLELCRGIEVGHIFQLRTRYAEALKCTFLDESGQSRVMEMGCYGIG 448

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R+V A IE  HD +GI++P ++APF++ ++ +  A  Q  RDA + +Y  L + G DV
Sbjct: 449 VTRIVGAAIEQGHDERGIVFPAAIAPFEVCIVPMGYAKSQAVRDAADALYGELMREGIDV 508

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G  FA  +L+G P +V+VG + ++  K+E K R+    + +    +  +  
Sbjct: 509 LLDDRNERPGVMFAEMELIGVPHRVVVGERGLAQGKLEYKGRVDSESQMLPAATLGRFLK 568

Query: 440 HRF 442
            R 
Sbjct: 569 DRL 571


>gi|56696171|ref|YP_166527.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|73919826|sp|Q5LTX8|SYT_SILPO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56677908|gb|AAV94574.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 648

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 151/440 (34%), Gaps = 49/440 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 KAHLHMLEE----AAKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWTIYTTLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG ++ Y + M  +    + A         P +      
Sbjct: 290 RRGGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIESETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       I+  LG +   ++    P     S      A+        +        P E
Sbjct: 409 EFIDFLSMIYKDLGFEKFSVKFSDRPDTRAGSDAVWDKAEAALLSATRAAGIEPELNPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++  + +     ++    F    +  
Sbjct: 469 GAFYGPKLEFVLT--------------------DAIGRDWQCGTHQVD----FVLPER-- 502

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+ GADG K   V +    +G+      ++   H GK   W   +AP ++ + +I
Sbjct: 503 --LDATYIGADGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++ A L   G     D   E+I  +     +   P+ + VG + V + 
Sbjct: 558 TS---EADDYVREVVAELCAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGHREVEER 614

Query: 415 KVEIKHRLTGIREDMSLEEV 434
            V ++          SL +V
Sbjct: 615 TVSVRRLGEKQTSVQSLADV 634


>gi|42526600|ref|NP_971698.1| threonyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|73919840|sp|Q73NR2|SYT_TREDE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41816793|gb|AAS11579.1| threonyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 585

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 162/451 (35%), Gaps = 54/451 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L +L+E    AE   H+ + +      I + + G   W P G      +   +R+  
Sbjct: 172 KEYLAMLEE----AEKRDHRRIGKAMNLFHIDEENPGQIFWHPKGWTLYLTIQNYVRKRI 227

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  
Sbjct: 228 KEDGYLEVHTPFVMPRSLWERSGHWAKYKENMF-ITESEKRLFALKPMNCPGHVEIFKQG 286

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSY++LP    +     R+E      G+MR R F+  DA+ F  T E      +K    
Sbjct: 287 IKSYKDLPLRLAEFGSCTRNEPSGSLHGIMRIRGFVQDDAHIF-CTEEQISSEVSKFCAL 345

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             R++   G     I ++  + P            A+   +               E   
Sbjct: 346 LKRMYADFGFAEDKILVKFSTRPEQRVGDDATWDRAEKALSDACADAGLKYEIAEGEGAF 405

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +    I                               R  + G I      Y LP 
Sbjct: 406 YGPKLEFTLID---------------------------ALGREWQCGTI---QLDYQLPS 435

Query: 298 ---MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
              ++A + G D  K H V +    +G++     ++  +  G   I P  +AP +  ++ 
Sbjct: 436 AERLNAEYIGDDNNKHHPVMLHRAVLGSLERFIGILIENCAG---IMPPWLAPVQAVIVP 492

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        +  +K+   L + G  V  D   +++ ++           Q+IVG   + +
Sbjct: 493 VAP---AFNEYAQKVQKVLDEKGFRVIADIGTDRMNAKIRKHQEEKVIYQLIVGQSEMDN 549

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + V ++ R  G +  M+L+E I++   +  +
Sbjct: 550 NSVAVRMRKGGQK-VMTLDEFISFLKDKVDS 579


>gi|134294675|ref|YP_001118410.1| prolyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166980110|sp|A4JBC2|SYP_BURVG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134137832|gb|ABO53575.1| prolyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 578

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPDVADVRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     ++ R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFELVLCPMGYDRSEMVREAADKLYAELTAAGVDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D KVE + R       +  +      + +  
Sbjct: 532 HRLVIGERGLKDGKVEYQGRRDAEATLLPADAAAATVTEKIR 573


>gi|167624874|ref|YP_001675168.1| prolyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083514|sp|B0TNJ5|SYP_SHEHH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167354896|gb|ABZ77509.1| prolyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 570

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF +  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHIDQETMDETYEAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YNNILTRLGLSFRPVMADTGSIGGSMSHEFHVLANSGEDLIAYS 224



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 114/205 (55%), Gaps = 3/205 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
            D      I  +   P AA  D+ N    +  P  K V A  RGIEVGHIF  GT YS  
Sbjct: 364 QDGKHYFGINWERDLPEAAAFDLRNIIEGEPSPCGKGVIALLRGIEVGHIFQLGTNYSEA 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+A     +GK   + MG YG+G  R+VAA IE ++D +GIIWPD++APF + ++ +  H
Sbjct: 424 MNANVLDQNGKSKTLLMGCYGVGVSRMVAAAIEQNNDDRGIIWPDAIAPFTVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  E++Y  L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   
Sbjct: 484 KSHRVKDIAEQLYQDLNDAGIEVMFDDRKERPGVMFADMELIGIPHVVVIGDRNIDNGMF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           E K+R TG ++D+ L +++ +   +
Sbjct: 544 EYKNRRTGEKQDIPLGDIVEFLKAQ 568


>gi|257125504|ref|YP_003163618.1| prolyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257049443|gb|ACV38627.1| prolyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 570

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 130/306 (42%), Positives = 179/306 (58%), Gaps = 1/306 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++A+I SH+LMLR  MI+Q ++G+Y++LP G + L  +  I REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAQIVSHQLMLRAFMINQLTRGVYTYLPFGYRVLKKIENITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAQELLMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFSLGPTHEEVITDVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REF+MKD YSF LT E     Y  M  +
Sbjct: 121 SISSYKELPFNVYQIQTKFRDEMRPRFGLMRGREFVMKDGYSFHLTQESLDEEYLNMKDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    + A++G IGGD SHEF+VLA++GE  +  S          + T   
Sbjct: 181 YSRIFERMGLNYRAVEADTGSIGGDASHEFMVLAESGEDDILYSDSSDYAANVEKATSII 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++   N             +    E L + L   K  + + + +  I   G K+ L +  
Sbjct: 241 ELKESNEEKLPKELVET-PNAKTIEDLANFLNIPKEKTVKAVMLKEILEDGEKFVLALIR 299

Query: 301 TFKGAD 306
                +
Sbjct: 300 GDLDVN 305



 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 105/169 (62%), Gaps = 1/169 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGHIF  G KYS  ++AT    +GK  +++MG YG+G  R+++A IE +HD 
Sbjct: 403 LKIARGIEVGHIFKLGEKYSKALNATVLDENGKQQFIKMGCYGMGMSRIISAAIEQNHDE 462

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP+ + +I     D+   +  EK+Y  L++   +   DD  E+ G +F  A
Sbjct: 463 YGIIWPKAIAPYHVDVIIANMKDETQVNIGEKLYNELNQNKIETVLDDRNERAGFKFKDA 522

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           DL+GFPL+++VG K  +D  VE+K R TG   D+ +EEV+N+  +  + 
Sbjct: 523 DLIGFPLKIVVG-KGAADGIVEVKDRKTGESTDVKVEEVLNFVKNFMAE 570


>gi|148360654|ref|YP_001251861.1| prolyl-tRNA synthase [Legionella pneumophila str. Corby]
 gi|296106282|ref|YP_003617982.1| prolyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166980133|sp|A5IGL5|SYP_LEGPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148282427|gb|ABQ56515.1| prolyl-tRNA synthase [Legionella pneumophila str. Corby]
 gi|295648183|gb|ADG24030.1| prolyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 569

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 168/225 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSIESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S 
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSD 225



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 106/198 (53%), Gaps = 3/198 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +  A Y    D+ N K  D  P         RGIEVGH+F  G KY+  M+A+     G
Sbjct: 372 WERDAKYDDAYDLRNVKEGDPSPDGRGMLHCCRGIEVGHVFQLGDKYAKAMNASVINEQG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACE 366
           +   + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E
Sbjct: 432 QLQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQTVKEQAE 491

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   
Sbjct: 492 SLYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSET 551

Query: 427 EDMSLEEVINYASHRFSN 444
           + ++L++V+N+     + 
Sbjct: 552 QLINLDKVVNFIIELINK 569


>gi|83720100|ref|YP_441693.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167618612|ref|ZP_02387243.1| prolyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|257137862|ref|ZP_05586124.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|114152178|sp|Q2SZF6|SYP_BURTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83653925|gb|ABC37988.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 578

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVIADIRNVKAGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D K+E + R       +  +      + +  
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLPADSAATAVAEKVR 573


>gi|34763461|ref|ZP_00144407.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237741623|ref|ZP_04572104.1| threonyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|294785766|ref|ZP_06751054.1| threonine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|27886876|gb|EAA24002.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229429271|gb|EEO39483.1| threonyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|294487480|gb|EFG34842.1| threonine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 637

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 164/445 (36%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIIRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E   +A+                 P +   + 
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAEAALAGALDKLGRKYKINPGDGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      ++LP   
Sbjct: 462 PKLDFK---------------------------IKDAIGRMWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ +   
Sbjct: 492 DVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTLN-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKV 416
              C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V +  V
Sbjct: 547 -DECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKGV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +    L+E  NY    
Sbjct: 606 NIRRFGSKDQFTKPLDEFYNYVVDE 630


>gi|74318130|ref|YP_315870.1| prolyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|74057625|gb|AAZ98065.1| prolyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
          Length = 579

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL   +E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  V A++REE
Sbjct: 4   MRTTQFFLSTTKEAPSEAELVSHKLMLRAGLIKRLGSGLYTWMPLGLRVLRRVEAVVREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TD+ R 
Sbjct: 64  MNRAGAIELLMPAVQPAELWQETGRWAQFGPQMLKIKDRHEREFCFGPTHEEVITDLARR 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E    +Y  M+ +
Sbjct: 124 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHASRESLAATYQAMYDA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  +   
Sbjct: 184 YGRIFTRLGLRFRAVAADTGAIGGSASHEFHVLADSGEDLIAYC 227



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 101/184 (54%), Gaps = 8/184 (4%)

Query: 263 HNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGH+F  G KYS  M+AT+    GK   ++MG YGIG
Sbjct: 390 RNVVAGDPSPDGKGTLALCRGIEVGHVFQLGNKYSQAMNATYLDEAGKAQAMEMGCYGIG 449

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R+VAA +E +HDGKGI+WP S+APF + ++ I        ++A + +YA L  VG +V
Sbjct: 450 VSRIVAAAVEQNHDGKGIVWPASMAPFSVVIVAIGYGKSASVKNAADTLYADLMAVGVEV 509

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLEEV 434
             DD  E+ G  FA A+L+G P +V +G + +++  VE + R            +++ E 
Sbjct: 510 LLDDRDERPGVMFADAELVGIPHRVTLGERGLNEGVVEYQPRRAAPEQGADARKIAVAEA 569

Query: 435 INYA 438
             + 
Sbjct: 570 KAFL 573


>gi|310764925|gb|ADP09875.1| prolyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 572

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFS 224



 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I      P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGQHFSGINWDRDLPLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +    
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y +L   G DV  DD  E+ G  FA  +L+G P  V++G + +   ++E
Sbjct: 486 SFRVKELAEELYHQLRAKGIDVILDDRKERPGVMFADMELIGVPHTVVIGERNLDSEEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R  G +  M   E++++     + 
Sbjct: 546 YKSRRAGEKRMMKTNEIVDFLVAELAQ 572


>gi|259907567|ref|YP_002647923.1| prolyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224963189|emb|CAX54673.1| Prolyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283477409|emb|CAY73325.1| proS [Erwinia pyrifoliae DSM 12163]
          Length = 572

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +  S
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I      P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGQHFSGINWDRDLPLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +    
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y +L   G DV  DD  E+ G  FA  +L+G P  V++G + +   +VE
Sbjct: 486 SFRVKELAEELYHQLRAKGIDVILDDRKERPGVMFADMELIGIPHTVVIGERNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R  G +  M   E++++     + 
Sbjct: 546 YKSRRAGEKRMMKTNEIVDFLVAELAQ 572


>gi|146293614|ref|YP_001184038.1| prolyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166980158|sp|A4Y8F6|SYP_SHEPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145565304|gb|ABP76239.1| prolyl-tRNA synthetase [Shewanella putrefaciens CN-32]
          Length = 571

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R TG ++D+  ++++++  +   +
Sbjct: 545 YKNRRTGEKQDIPFDQLVDFLKNAVKS 571


>gi|114152274|sp|Q3SH24|SYP_THIDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 576

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL   +E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  V A++REE
Sbjct: 1   MRTTQFFLSTTKEAPSEAELVSHKLMLRAGLIKRLGSGLYTWMPLGLRVLRRVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQETGRWAQFGPQMLKIKDRHEREFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E    +Y  M+ +
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHASRESLAATYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  +   
Sbjct: 181 YGRIFTRLGLRFRAVAADTGAIGGSASHEFHVLADSGEDLIAYC 224



 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 101/184 (54%), Gaps = 8/184 (4%)

Query: 263 HNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGH+F  G KYS  M+AT+    GK   ++MG YGIG
Sbjct: 387 RNVVAGDPSPDGKGTLALCRGIEVGHVFQLGNKYSQAMNATYLDEAGKAQAMEMGCYGIG 446

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R+VAA +E +HDGKGI+WP S+APF + ++ I        ++A + +YA L  VG +V
Sbjct: 447 VSRIVAAAVEQNHDGKGIVWPASMAPFSVVIVAIGYGKSASVKNAADTLYADLMAVGVEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLEEV 434
             DD  E+ G  FA A+L+G P +V +G + +++  VE + R            +++ E 
Sbjct: 507 LLDDRDERPGVMFADAELVGIPHRVTLGERGLNEGVVEYQPRRAAPEQGADARKIAVAEA 566

Query: 435 INYA 438
             + 
Sbjct: 567 KAFL 570


>gi|295677734|ref|YP_003606258.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295437577|gb|ADG16747.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 578

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIISHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRRQGDFVLGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 11/227 (4%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + S   D+        +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGSNEVDYH----TTGVNWGRDLPEPVVADIRNVKKGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M+AT     GK   ++MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMNATCLDETGKPQPMEMGCYGIGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +        R+  +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDAVREQADKLYAELAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRFSN 444
            ++++G + + D K+E + R       + + +    VI+      +N
Sbjct: 532 HRLVIGDRGLKDGKIEYQGRRDAEATLLPVADAAQTVIDKVRAALAN 578


>gi|146295842|ref|YP_001179613.1| prolyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166980111|sp|A4XHN7|SYP_CALS8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145409418|gb|ABP66422.1| prolyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 572

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 123/285 (43%), Positives = 166/285 (58%), Gaps = 4/285 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P ++E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTMKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L   +LW ESGR+  +G EM ++ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRAGAQEVHMSALMPKELWEESGRWAVFGPEMFKIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  EG   SY KM+ +
Sbjct: 121 EVTSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDMNEEGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGSNSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE----KLFDSLPENKRVSARG 281
           + +     ++Q    Y        E       D+    K +  R 
Sbjct: 241 EPVENTEEIKQMQEVYTPNVRTIEELVNFLNIDAKRFVKTMIYRA 285



 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + S  TD+   I   ++ +     +A   ++  + L       K    RGIEV
Sbjct: 349 KYLKNFVVGSNKTDYH--IKNVNLSDFKVTKFADLRNITQDDLCPKCLSQKVTIERGIEV 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKY+   +  +    G+   + MG YGIG  R  AA+IE  HD  GIIWP +V
Sbjct: 407 GHIFKLGTKYTEAFNCVYTDEKGEKKLMIMGCYGIGINRTAAAIIEQMHDEDGIIWPITV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +   D+       +IY  L K G +V  DD  E+ G +F  ADL+G P +V
Sbjct: 467 APYEVIVVPVNIKDEQQSKIAFEIYEDLQKKGVEVLIDDRDERAGVKFKDADLIGIPFRV 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            +G K ++D ++E+++R T    ++ +E  + +  +  +  + 
Sbjct: 527 TIGRK-IADGRIEVRNRRTKESVEVDIESAVEFILNLINEEKA 568


>gi|332292754|ref|YP_004431363.1| threonyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170840|gb|AEE20095.1| threonyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 648

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 162/451 (35%), Gaps = 49/451 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      +L L T    +  +G+  WLP G    + +   ++  Q +
Sbjct: 229 KEYLELIEEAKKRDHRKLGKELELFT-FSQRVGQGLPLWLPKGAALRERLENFLKAAQKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P +   +L+  SG Y+ YG +  +  L     +  +  P +     +I+ S 
Sbjct: 288 QGYEMVVSPHIGQKELYETSGHYEKYGADSFQPILTPNEGEEFLLKPMNCPHHCEIYNSR 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + K+   
Sbjct: 348 PWSYKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFMKVIDL 406

Query: 181 YLRIFHRLGLKSIPMRAESG----PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            L +F  LG ++   +        P     + E  V A+        +K         E 
Sbjct: 407 VLYVFGSLGFENFTAQVSLRDPEKPEKYIGADENWVKAENAILNAAKAKGLNYVVETGEA 466

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   +                               K    R  ++G I      Y+L
Sbjct: 467 AFYGPKLDF---------------------------MVKDALGRSWQLGTI---QVDYNL 496

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +KG+D + H  V +     G+M    A++     G   +W   + P + +++ 
Sbjct: 497 PERFELQYKGSDNEMHRPVMIHRAPFGSMERFIAILLEHTGGNFPLW---LMPQQATILT 553

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +      + +   L         D+ GE +G +   A++   P  +I+G +  +D
Sbjct: 554 L---SEKYEKYAQNVLTLLENHEIRAIIDNRGETMGKKIREAEMQKLPFMIIIGEQEEND 610

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + ++         M+++      +   ++
Sbjct: 611 GTISVRRHGGEDLGSMTIDAFAKMVNAEIAS 641


>gi|290968110|ref|ZP_06559655.1| proline--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781785|gb|EFD94368.1| proline--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 575

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 116/284 (40%), Positives = 174/284 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+++P +AE+ASHK ML+ GMI +++ G YS+LPL ++++  +  IIREE
Sbjct: 1   MLASKLYCPTLRDDPAEAEVASHKYMLKAGMIRKNASGFYSFLPLARRSVLKIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+ +P +Q A++W ESGR+D YGKEM +LADR+       PTHEE++T + R+
Sbjct: 61  MDKTGAQEIMMPIVQPAEIWQESGRWDVYGKEMFKLADRHGNEYCLAPTHEELITTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE+RPRFG+MRSREF+M+D+YSFD   EG + SY  M+ +
Sbjct: 121 ELRSYKQLPVNLYQIQNKYRDEIRPRFGLMRSREFVMQDSYSFDTDQEGLEKSYQAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL+   + A+SG IGG  SHEF+ LA +GE  +             + T   
Sbjct: 181 YSRIFTRCGLQYRTVLADSGQIGGKHSHEFMALAASGEADIVTCTQCAYAADVEQATPNP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
              +   +           + +        +P  K + A  +++
Sbjct: 241 LPAAAEPLQAIEKFATPHCATIEELVQAAGVPAEKTIKAVALDI 284



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 8/243 (3%)

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S +F +L D    Q++         +   N +      +    +      A    +  
Sbjct: 338 KTSEQFHILVDPTAMQIYNG-------VTGANEEGFHYRHVTPSRDFTGVQVAPIRLITA 390

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                      +++ RGIEVG +F  GTKYS  + A+F   DGK     MG YGIG  R 
Sbjct: 391 ADGCPECGAPVQLT-RGIEVGQVFQLGTKYSEALQASFLDKDGKAKPFVMGCYGIGVTRT 449

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA IE  HD +GI+WP ++AP++  ++ +   D+V   A  ++Y +LS    ++  DD 
Sbjct: 450 MAAAIEQYHDERGILWPVAIAPYEAVILPLNMKDEVMVTAARELYTQLSADSSEIVLDDR 509

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F  ADL+G+P+Q++VG    +   VEIK R TG +E + +   +         
Sbjct: 510 PERAGVKFNDADLIGYPVQIVVGKDTKTKGTVEIKVRRTGAKEAVPVRTAVGRVQAILRE 569

Query: 445 NRP 447
            R 
Sbjct: 570 LRA 572


>gi|227514102|ref|ZP_03944151.1| threonine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|227087473|gb|EEI22785.1| threonine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 634

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 162/436 (37%), Gaps = 36/436 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   + +++   G   + 
Sbjct: 225 EARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGSTIRRTIERYVIDKEVGDGYEHVY 282

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +D Y ++M    D  D  ++   P +      I++ HI+SYR LP
Sbjct: 283 TPVLMNLDAYKTSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYKHHIRSYRELP 342

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 343 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIQDEFAKILKLIMDVYKDF 401

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ + + D M     S      D + L+  
Sbjct: 402 NINDYTFRLSYR--------------DPKNTEKYFANDEMWERSQSMLKAAMDSMGLD-- 445

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++    F    K+       + G DGK
Sbjct: 446 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPEKF----DLHYVGEDGK 497

Query: 309 DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ G M    A +   + G    W   +AP ++++I +   D+   D  + 
Sbjct: 498 QHRPVMIHRGVVGTMERFVAYLTEIYKGAFPTW---LAPNQVNIIPVS--DEKHGDYADD 552

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +             D   E++G +   +     P  ++VG   V++  V ++      + 
Sbjct: 553 LAREFRAAQLRTVVDHRSEKMGYKIRESQTQKVPYTLVVGEDEVANGTVSVRKYGEKDQV 612

Query: 428 DMSLEEVINYASHRFS 443
            MS ++ ++   H  +
Sbjct: 613 SMSKQDFLDLILHDVA 628


>gi|15604092|ref|NP_220607.1| threonyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|2501061|sp|O05947|SYT_RICPR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2073475|emb|CAA72469.1| threonyl-tRNA synthetase [Rickettsia prowazekii]
 gi|3860783|emb|CAA14684.1| THREONYL-TRNA SYNTHETASE (thrS) [Rickettsia prowazekii]
 gi|292571818|gb|ADE29733.1| Threonyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 635

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 158/444 (35%), Gaps = 45/444 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLFMLEEAEKRDHRKIGKELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P L    LW  SG +  +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YIEVKTPVLVDKSLWEASGHWAKFRCDMFTL-ETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E       +       +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-EEQITDETVRFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++          + E    A+           F+    P E   +   I 
Sbjct: 407 YKDFGFTDIKVKFSDRSEICAGNDEVWDKAENALKTAIEKAGFIYTLNPGEAAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A +
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDANY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + GK  IW   +AP ++++  I       
Sbjct: 497 IAASGEKKRPVMLHRAILGSLERFIGILIEEYAGKFPIW---LAPVQVAIATITND---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     +   ++I  +         P+  ++G +  ++ +V I+  
Sbjct: 551 NDYALEVQKTLIDNGVRTDINISPDKINYKIREFSNQKIPIIAVIGKQEQANKQVTIRKL 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            T  +E +S+E++I       SN 
Sbjct: 611 GTIEQEILSIEQLIAMIKKENSNY 634


>gi|213403436|ref|XP_002172490.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212000537|gb|EEB06197.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 699

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 160/454 (35%), Gaps = 48/454 (10%)

Query: 11  LQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            ++   +A    H+ + R       H+ S G   +LP G +  + + A IRE+    G  
Sbjct: 275 YKKFLAEAAKRDHRKIGREQDLFFFHELSPGSCFFLPHGARIYNQLIAWIREQYKIRGFQ 334

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P + + DLW  SG +++Y + M       DK     P +      I++S  +SYR+
Sbjct: 335 EVITPNMYNVDLWKTSGHWNNYAENMFSFEIEKDK-FALKPMNCPGHCLIYKSRDRSYRD 393

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP+      +  R+E      G+ R R F   DA+ F   P+  +      F     ++ 
Sbjct: 394 LPWRCADFGVLHRNEFSGALTGLTRVRRFQQDDAHIF-CRPDQVRSEIENCFDFLKYVYG 452

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G     +   + P                  + +           ++     D     
Sbjct: 453 VFGFTF-HLELSTRP-----------------EEKYLGDLETWNKAEAQLKAALDASGYE 494

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS------- 299
              E      A      +  +FD+L    + +   ++    F    ++ L          
Sbjct: 495 --WELNEGDGAFYGPKIDITVFDALKRQHQCATIQLD----FQLPERFELEFHGTTEGDE 548

Query: 300 -ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A     +     V +    +G++  + A++   + GK   WP  ++P ++S++ +    
Sbjct: 549 AADSTNKNKYIRPVMIHRAILGSVERMIAILTEHYGGK---WPFWLSPRQVSVVPV---S 602

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+  RL   G     D     +  +   A L  +    +VG++    + V I
Sbjct: 603 AAAFDYANKVQKRLFDAGLFADVDTSDNTLPKKIRNAQLSQYNFIFVVGAEEEKTNSVNI 662

Query: 419 KHRLTGIRE----DMSLEEVINYASHRFSNNRPV 448
           ++R    ++     + L+EV+           PV
Sbjct: 663 RNRDDPKKQAKTATVPLDEVVAKLVALKETKNPV 696


>gi|163854968|ref|YP_001629266.1| prolyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|226699121|sp|A9I4I5|SYP_BORPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163258696|emb|CAP40995.1| proS [Bordetella petrii]
          Length = 576

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  + AI+R E
Sbjct: 1   MRASTYHLNTLKEAPAEAEVASHRLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEAIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MDAAGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+KM+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQQSYDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  + D     
Sbjct: 181 YMRIFERLGLQFRAVAADTGSIGGSRSHEFQVIADTGEDLLVYNPDSQYAA 231



 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGT 292
              + +D     +   +        +D+ N    D  P+   +    RGIEVGH+F+ GT
Sbjct: 363 CGANREDFHYQGANWGRDLPEPELVADLRNVVEGDPAPDGAGRLAIQRGIEVGHVFFLGT 422

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + ATF    GK   +QMG YGIG  R+  A IE +HD +GIIWP ++APF++ + 
Sbjct: 423 KYSEALKATFLDETGKPALLQMGCYGIGITRIAGAAIEQNHDERGIIWPRAIAPFEVVIC 482

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +    ++  R+   K+Y  L   G DV  DD   + G  FA  +L+G PL+V VG + +
Sbjct: 483 PVGWGKNETVRNESVKLYDALRARGVDVILDDRDARPGVMFAEWELIGVPLRVTVGERGL 542

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +D  VE++ R       +     +     +  
Sbjct: 543 NDGVVELQARRESTAAKIPAGSALEQVLAKLE 574


>gi|314936214|ref|ZP_07843561.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654833|gb|EFS18578.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 645

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 157/415 (37%), Gaps = 33/415 (7%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G+  WLP G      +   I +++   G   +  P L + +L+  SG +D Y  +M 
Sbjct: 259 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELYKTSGHWDHYRDDMF 318

Query: 95  RLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                ++ + M+  P +      ++ +   SYR LP    ++    R E      G+ R 
Sbjct: 319 PPMKLDETEEMVLRPMNCPHHMMVYNNKPHSYRELPIRIAELGTMHRYEASGAVSGLQRV 378

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R   + D++ F + P+  K  + ++      ++   G +    R                
Sbjct: 379 RGMTLNDSHIF-VRPDQIKDEFKRVVHMIQDVYEDFGFEDYTFRLSYR------------ 425

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  + + +   D M     S   +  D + L  +     A  A      + ++  ++ 
Sbjct: 426 --DPEDKEKYMDDDDMWNKAESMLKEAVDEMGLPYVEAIGEA--AFYGPKLDVQVKTAMG 481

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIES 331
           + + +S   ++    F    ++      ++ G+DG++H   +   G+ + M    A +  
Sbjct: 482 KEETLSTAQLD----FLLPERF----DLSYIGSDGENHRPVVIHRGVVSTMERFVAFLTE 533

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              G    W   +AP ++ +I +     +  D    +   L   G  V  DD  E++G +
Sbjct: 534 ETKGAFPTW---LAPKQVEIIPVNV--DLHYDYARNLQDELKSQGVRVEIDDRNEKMGYK 588

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              A +   P Q++VG K V +++V ++   +  +E +  +E I          R
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNEVNVRKYGSQDQETIERDEFIWNLVDEIRLKR 643


>gi|299144001|ref|ZP_07037081.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518486|gb|EFI42225.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 639

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 156/446 (34%), Gaps = 41/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   I +   RD      +L L T  +H    G   + P G    + +    R   
Sbjct: 229 QLDEYIERIEEAEKRDHRKLGRELDLFT--MHDEGPGFPFFHPNGMILRNELLGWWRNVL 286

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG +D Y + M      + +     P +    T ++ ++
Sbjct: 287 IENGYGEIQTPIILNEALWHRSGHWDHYKENMY-FTKIDGEDYAVKPMNCPGSTIVYSTN 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP    +     R EL     G+ R R F   DA+ + L P   +    KM   
Sbjct: 346 PHSYRELPIRLSEFGQVHRHELSGALHGLFRVRTFTQDDAHVYCL-PSQIEEEVFKMIDL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P       E    A+                  S     +
Sbjct: 405 ADYLYSTFGFKY-SVELSTRPEDFMGDIETWNKAE-----------------ESLKVALE 446

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 SI E   A Y    D H E              R  + G I     +  +    
Sbjct: 447 KKNIKYSINEGDGAFYGPKIDFHLEDAIG----------RTWQCGTI-QLDFQMPVNFDL 495

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+    G K   V +    +G++     ++     GK  +W   ++P ++ +I +    +
Sbjct: 496 TYINEKGEKARPVMLHRALLGSVERFMGILIEHFAGKFPLW---LSPIQVEIIPV---SE 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +++  +L   G  V+ D+  E++G +   A L      ++VG + V+  K+ ++
Sbjct: 550 KFAEFAKELEIKLKNTGLKVYLDERAEKVGYKIREAQLKKINYMLVVGEQEVNSGKLSVR 609

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R     +D  +EE IN       + 
Sbjct: 610 KRNGEEIKDCEVEEFINILKSEIESK 635


>gi|218563696|ref|NP_001116258.1| threonyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio]
 gi|158253608|gb|AAI54372.1| Zgc:92586 protein [Danio rerio]
          Length = 718

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 155/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H  S G   +LP G    + +   IR E  
Sbjct: 301 KMLKEWEKFQEEAKNRDHRKLGREQDLFFFHDLSPGSCFFLPKGAYIYNTLIEFIRSEYR 360

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG +  Y + M        +     P +      +F    
Sbjct: 361 KRGFQEVVTPNIYNSKLWQTSGHWQHYSENMFSFEVEK-EIFALKPMNCPGHCLMFDHRP 419

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F  + +  +          
Sbjct: 420 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CSMDQIESEIKGCLDFL 478

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                 P +      
Sbjct: 479 RTVYDVFGFTF-KLNLSTRPEKFLGEPEVWDQAEKQLENSLNDFGEKWVLNPGDG----- 532

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 533 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 571

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ I      C
Sbjct: 572 SHDGDDKKRPVIIHRAILGSVERMIAILTENYGGK---WPLWLSPRQVMVVPIGP---TC 625

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +++     KVG     D D G  +  +   A L  +   ++VG K  S   V ++ 
Sbjct: 626 DEYAQRVQKEFHKVGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSDTVNVRT 685

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + SL + +       ++ 
Sbjct: 686 RDNKVHGERSLTDCMERLKQLKASR 710


>gi|184156306|ref|YP_001844646.1| threonyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|183227650|dbj|BAG28166.1| threonyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
          Length = 634

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 162/436 (37%), Gaps = 36/436 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   + +++   G   + 
Sbjct: 225 EARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGSTIRRTIERYVIDKEVGDGYEHVY 282

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +D Y ++M    D  D  ++   P +      I++ HI+SYR LP
Sbjct: 283 TPVLMNLDAYKTSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYKHHIRSYRELP 342

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 343 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIQDEFAKILKLIMDVYKDF 401

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ + + D M     S      D + L+  
Sbjct: 402 NINDYTFRLSYR--------------DPKNTEKYFANDEMWERSQSMLKAAMDSMGLD-- 445

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++    F    K+       + G DGK
Sbjct: 446 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPEKF----DLHYVGEDGK 497

Query: 309 DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ G M    A +   + G    W   +AP ++++I +   D+   D  + 
Sbjct: 498 QHRPVMIHRGVVGTMERFVAYLTEIYKGAFPTW---LAPNQVNIIPVS--DEKHGDYADD 552

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +             D   E++G +   +     P  ++VG   V++  V ++      + 
Sbjct: 553 LAREFRAAQLRTVVDHRSEKMGYKIRESQTQKVPYTLVVGEDEVANGTVSVRKYGEKDQV 612

Query: 428 DMSLEEVINYASHRFS 443
            MS ++ ++   H  +
Sbjct: 613 SMSKQDFLDLILHDVA 628


>gi|167580503|ref|ZP_02373377.1| prolyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 578

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----MAGVNWGRDLPEPVIADIRNVKAGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D K+E + R       +  +      + +  
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLPADSAATAVAEKVR 573


>gi|294010776|ref|YP_003544236.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292674106|dbj|BAI95624.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 668

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 147/450 (32%), Gaps = 48/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    + Q + G   W P G      + A +R   +  G 
Sbjct: 245 LTRLEEAARRDHRKLGAEMDLF--HLQQEAHGSVFWHPKGYIIWRALEAYMRRAIDDAGY 302

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
            E+  P +  A  W +SG +  Y + M  + D              +   M   P +   
Sbjct: 303 REVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNVEDEGPLVSDDADWMALKPMNCPA 362

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR  IKSYR+LP  FY+     R+E      G+MR R+F   DA+ F    +    
Sbjct: 363 HVLIFRQGIKSYRDLPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CREDQIVE 421

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     RI+   G     ++    P     S     + D  E ++  +        
Sbjct: 422 EVRAFCALADRIYKDFGFTY-SIKLALRPEKRFGSD---AMWDQAENELRDAVAAAGLDT 477

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P    +           +                             R  +VG I     
Sbjct: 478 PEYGWEELPGEGAFYAPKLEWHLTD-------------------AIGRTWQVGTI-QSDR 517

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H  V +     G+      ++   + G+  +W   +AP +  +
Sbjct: 518 VLPERLDASYVGEDGERHRPVMLHRAIFGSYERFIGILIEHYAGRFPLW---LAPVQAVV 574

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             I +          ++  +L   G     D   E+I  +     L   P  ++VG +  
Sbjct: 575 ATIVSD---ADGYAIEVAEKLRAAGIRAETDLRNEKINYKVREHSLAKVPNLLVVGRREA 631

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  V ++      +  +S+++VI   +  
Sbjct: 632 DEGTVALRELGKEGQSVLSVDDVIARLAKE 661


>gi|262382112|ref|ZP_06075250.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298375301|ref|ZP_06985258.1| threonine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|262297289|gb|EEY85219.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298267801|gb|EFI09457.1| threonine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 651

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 152/453 (33%), Gaps = 47/453 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 226 KMLDEYLTLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+
Sbjct: 285 QARYNYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  +  +
Sbjct: 345 KNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKQEFLNV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F  +  ++   +                  D    + +   D           
Sbjct: 404 MDIISIVFKTMNFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIV 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +  +   L                   E    +    K        +G  +  GT    Y
Sbjct: 450 EACEEKGL---------------KAKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 494

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      + GAD + H  V +     G+M    AV+     GK  +W   + P ++ +
Sbjct: 495 NLPERFQLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPEQVCI 551

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   +I   L         DD  E+IG +    +L   P  +IVG K  
Sbjct: 552 MPI---SEKFNDYAWQIARELGNQEIRAIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEA 608

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +V ++ +  G +  M +       +     
Sbjct: 609 ENGEVSVRKQGEGDKGSMKIATFAALLNGEVEE 641


>gi|122891384|emb|CAM13348.1| novel prtoein similar to vertebrate threonyl-tRNA synthetase (TARS,
           zgc:92586) [Danio rerio]
          Length = 718

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 155/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H  S G   +LP G    + +   IR E  
Sbjct: 301 KMLKEWEKFQEEAKNRDHRKLGREQDLFFFHDLSPGSCFFLPKGAYIYNTLIEFIRSEYR 360

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG +  Y + M        +     P +      +F    
Sbjct: 361 KRGFQEVVTPNIYNSKLWQTSGHWQHYSENMFSFEVEK-EIFALKPMNCPGHCLMFDHRP 419

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F  + +  +          
Sbjct: 420 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CSMDQIESEIKGCLDFL 478

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                 P +      
Sbjct: 479 RTVYDVFGFTF-KLNLSTRPEKFLGEPEVWDQAEKQLENSLNDFGEKWVLNPGDG----- 532

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 533 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 571

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ I      C
Sbjct: 572 SHDGDDKKRPVIIHRAILGSVERMIAILTENYGGK---WPLWLSPRQVMVVPIGP---TC 625

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +++     KVG     D D G  +  +   A L  +   ++VG K  S   V ++ 
Sbjct: 626 DEYAQRVQKEFHKVGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSDTVNVRT 685

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + SL + +       ++ 
Sbjct: 686 RDNKVHGERSLTDCMERLKQLKASR 710


>gi|323142328|ref|ZP_08077160.1| proline--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413212|gb|EFY04099.1| proline--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 569

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 123/353 (34%), Positives = 187/353 (52%), Gaps = 10/353 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +AEI SH+L+LR G + + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKVSKMYAPTLREVPSEAEIPSHQLLLRAGFMRKSTNGMYTYLPLAWRVIKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ESGR+D+YG EM+RL DR+      GPTHEE++T + ++
Sbjct: 61  MDHAGCQEIMMPIMQPAEIWKESGRWDAYGAEMVRLKDRHGHEYCLGPTHEEMVTTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE RPRFG+MRSR+F+MKD YSFD    G   SY  M+ +
Sbjct: 121 DVRSYRQLPLNLYQIQDKFRDERRPRFGLMRSRDFIMKDGYSFDRDEAGLDVSYKAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R GL   P+ A+SG IGG  SHEF+VLAD+GE ++             +   + 
Sbjct: 181 YDKIFTRCGLNFRPVEADSGAIGGTGSHEFMVLADSGEAEITYCTKCDYAADIEKAELYP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  + E           + +   F + P  K V A   +                 
Sbjct: 241 IKAPAEEMQELSEVETPNCKTIADVCAFLNAPIEKSVKAVAYQCEKGLVL---------C 291

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAA-VIESSHDGKGIIWPDSVAPFKISLI 352
             +G    +      + G   + +  A ++  +    G + P  + P K+ ++
Sbjct: 292 FVRGDHEVNETKVQNTVGAVELEMAEAELLAKAGTVGGYMGPVGLDPEKVIIV 344



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E  +      +            +     +            +D+      D  P     
Sbjct: 339 EKVIIVCDATVMNMHNVCCGANHEGFHYINANPGRDFTPTYVADIRLMAEGDPCPHCGAP 398

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            A  RGIE G +F   TKYS  M  T+   +GK+  + MG YGIG  R +AA +E SHD 
Sbjct: 399 IAKARGIEAGQVFKLHTKYSAAMKCTYLDENGKEQPMVMGCYGIGVGRTMAACVEQSHDA 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G+IWP ++AP+++ ++ +   D+      EKIY  L K G +V  DD  E+ G +F  A
Sbjct: 459 DGMIWPVAIAPYEVLVVPVNVKDEASFAKAEKIYNELHKAGVEVVIDDRKERPGVKFKDA 518

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSN 444
           DL+G+PL+V+VG K +   ++E+K R TG    + L+ + I         
Sbjct: 519 DLIGYPLRVVVGPKTLQTGELEVKVRKTGEVSMLPLDGDYITAIKEMLQK 568


>gi|52628042|gb|AAU26783.1| prolyl-tRNA synthase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 589

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 120/225 (53%), Positives = 168/225 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 21  MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 81  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 141 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S 
Sbjct: 201 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSD 245



 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 3/198 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +  A Y    D+ N K  D  P+ K      RGIEVGH+F  G KY+  M+A+     G
Sbjct: 392 WERDAKYDDAYDLRNVKEGDPSPDGKGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQG 451

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACE 366
           +   + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E
Sbjct: 452 QLQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAE 511

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    VE K R++   
Sbjct: 512 SLYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCVEYKARISSET 571

Query: 427 EDMSLEEVINYASHRFSN 444
           + ++L++V+N+     + 
Sbjct: 572 QLINLDKVVNFIIELINK 589


>gi|82701584|ref|YP_411150.1| prolyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|114152221|sp|Q2YBW3|SYP_NITMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|82409649|gb|ABB73758.1| prolyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 569

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 163/235 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+  L+E P +AE+ SHKLMLR G+I +   G+Y+W+PLG K L  V  I+REE
Sbjct: 1   MRASGFFISTLKEAPAEAELISHKLMLRAGIIRRLGSGLYTWMPLGLKVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MDAAGALELLMPAVQPAELWRETGRWDVFGPQMLKIRDRHERDFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M V+
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDIPSLEETYQAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGLK  P++A++G IGG  SHEF VLAD+GE  +    D         
Sbjct: 181 YCRIFDRLGLKFRPVKADTGAIGGSSSHEFHVLADSGEDAIAFCSDSDYAANVEM 235



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/212 (33%), Positives = 110/212 (51%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D   +N    +         D+ N    D  P+ K      RGIEVGHIF   T
Sbjct: 356 CGANEEDYHLVNVNFGRDLKEPDHVFDIRNVVSGDLSPDGKGKLEICRGIEVGHIFQLLT 415

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M A +    G+   ++MG YGIG  R+VAA IE +HD +GII+P ++APF++ +I
Sbjct: 416 KYSEAMKANYLDESGQARPMEMGCYGIGVSRIVAAAIEQNHDERGIIFPAAMAPFQVVII 475

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I    +   R   EK+YA LS VG +V  DD  ++ G  FA  +L+G P +V+VG + +
Sbjct: 476 PIGLKKNAEVRAEAEKLYATLSSVGIEVLLDDRDDRPGVMFADMELIGIPHRVVVGERGL 535

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +   E + R     E + L E+ ++   + +
Sbjct: 536 KEGNAEYRGRRDEKSEVVPLPEIADFIKSKLA 567


>gi|300214322|gb|ADJ78738.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 649

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 163/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 240 EARERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEVAWGFQHVY 297

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + +L+ +SG +D Y ++M    D  D  M+   P +      ++  H +SYR LP
Sbjct: 298 TPVLANLNLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHKRSYRELP 357

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D + F + P+  +     +      +++  
Sbjct: 358 LRIAELGMMHRYEKSGALTGLSRVREMTLNDGHDF-IEPDHIEDEIKTLIKLMTEVYNDF 416

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S+     D +     
Sbjct: 417 DITDYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQSKLKAAMDDMG--LE 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + GADG+
Sbjct: 461 YFEAEGEAAFYGPKIDVQTKTALGGEETLSTIQLD----FLLPERF----DLKYIGADGE 512

Query: 309 DHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   GI +      A +   + G    W   +AP ++ +I +K  + +  D    
Sbjct: 513 EHRPVMVHRGIVSTMERFTAYLTEMYKGAFPTW---LAPHQVDIIPVK--NDLHMDYVND 567

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + ++L   G  V  DD  E++G +   A +   P  +++G + VS+  V ++        
Sbjct: 568 LSSKLRAHGIRVTVDDRNEKMGYKIRQAQVNKIPYTLVIGDEEVSNGTVTVRKYGEEKTN 627

Query: 428 DMSLEEVINYASHRFSNN 445
            M+ +E  N       N 
Sbjct: 628 TMTKDEFKNLLFEDIENY 645


>gi|260662523|ref|ZP_05863418.1| threonyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260553214|gb|EEX26157.1| threonyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 627

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 162/436 (37%), Gaps = 36/436 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   + +++   G   + 
Sbjct: 218 EARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGSTIRRTIERYVIDKEVGDGYEHVY 275

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +D Y ++M    D  D  ++   P +      I++ HI+SYR LP
Sbjct: 276 TPVLMNLDAYKTSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYKHHIRSYRELP 335

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 336 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIQDEFAKILKLIMDVYKDF 394

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ + + D M     S      D + L+  
Sbjct: 395 NINDYTFRLSYR--------------DPKNTEKYFANDEMWERSQSMLKAAMDSMGLD-- 438

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++    F    K+       + G DGK
Sbjct: 439 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPEKF----DLHYVGEDGK 490

Query: 309 DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ G M    A +   + G    W   +AP ++++I +   D+   D  + 
Sbjct: 491 QHRPVMIHRGVVGTMERFVAYLTEIYKGAFPTW---LAPNQVNIIPVS--DEKHGDYADD 545

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +             D   E++G +   +     P  ++VG   V++  V ++      + 
Sbjct: 546 LAREFRAAQLRTVVDHRSEKMGYKIRESQTQKVPYTLVVGEDEVANGTVSVRKYGEKDQV 605

Query: 428 DMSLEEVINYASHRFS 443
            MS ++ ++   H  +
Sbjct: 606 SMSKQDFLDLILHDVA 621


>gi|86131542|ref|ZP_01050140.1| Threonyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85817987|gb|EAQ39155.1| Threonyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 647

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 163/448 (36%), Gaps = 43/448 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L T    +  +G+  WLP G    + +   ++  Q +
Sbjct: 229 KQYLELLEEAKKRDHRKLGKELELFT-FSQRVGQGLPLWLPKGAALRERLENFLKAAQKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P +   +L+  SG Y  YG +  +        +  +  P +     +I+ S 
Sbjct: 288 QGYEMVVSPHIGQKELYETSGHYAKYGADSFQPIQTPNEGEEFLLKPMNCPHHCEIYNSR 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + K+   
Sbjct: 348 PWSYKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFMKVIDL 406

Query: 181 YLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            L +F  LG +    +     P   D           GE +           + +EN   
Sbjct: 407 VLYVFGSLGFEDFTAQVSLRDPENPDKY--------IGEDE---------NWVKAENAIL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
           +   +        T   A      +  + D+L        R  ++G I      Y+LP  
Sbjct: 450 NAAKAKGLNYVVETGEAAFYGPKLDFMVKDALG-------RSWQLGTI---QVDYNLPER 499

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +KG+D + H  V +     G+M    A++     G   +W     P + +++ +  
Sbjct: 500 FELQYKGSDNEMHRPVMIHRAPFGSMERFVAILLEHTGGNFPLWLM---PQQATILTL-- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      + +   L         D+ GE +G +   A++   P  +I+G +   D  +
Sbjct: 555 -SEKYEKYAQNVLNLLENHEIRALIDNRGETMGKKIREAEMQKLPFMLIIGEQEEKDGTI 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++         M+++      S   ++
Sbjct: 614 SVRRHGGEDLGSMTIDAFAKIVSTEIAS 641


>gi|315641145|ref|ZP_07896224.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483153|gb|EFU73670.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 650

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 163/446 (36%), Gaps = 36/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 228 KEFIRMREEAKERDHRKLGKELDLFM-VSKEVGSGLPFWLPKGATIRRIIERYIVDKEVS 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G + +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 287 LGYMHVYTPIMADVNLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHIMVYKNDI 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 347 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKEEFKRTLDLM 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G+     R                  D   T  +   D M            D
Sbjct: 406 TAVYKDFGIDDYRFRLSYR--------------DPNNTDKYFDDDKMWENAQKMIKAAMD 451

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 452 ELGLD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----ELT 501

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP ++ +I +     
Sbjct: 502 YVGEDGENSHRPVMIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPVQVEIIPVSV--D 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++  RL + G     D   E++G +   A     P Q++VG + ++D+ V I+
Sbjct: 557 AHSEYAYEVKERLLEKGIRAEVDGRNEKMGYKIRAAQTQKIPYQLVVGDQEMNDATVNIR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +       L   ++       N 
Sbjct: 617 RYGSKETAVEELNMFVDAIVADVQNY 642


>gi|308173840|ref|YP_003920545.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307606704|emb|CBI43075.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 642

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 164/444 (36%), Gaps = 41/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L    +  ++AE  +H+ +   L+  M  + + G+  +LP GQ   + + + +R 
Sbjct: 225 ASKKELNRHFQLLKEAEKRNHRKLGAELQLFMFSEEAPGMPFYLPNGQFIRNTLESFLRS 284

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +Q+     E+  P + +  LW +SG +D Y + M   ++ + +     P +      IF+
Sbjct: 285 KQDAYHYQEVRTPMMMNQRLWEQSGHWDHYKENMY-FSEADQQRFALKPMNCPGHMLIFK 343

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR LP    +     R E      G++R R F   DA+ F +TPE  +       
Sbjct: 344 ERLRSYRELPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-VTPEQIESEIASAL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++   G     +   + P     S      A++   +V   + +           
Sbjct: 403 QLIHEVYTAFGFSY-DIELSTRPEDYMGSEHLWDRAESALERVLKEQGYD---------- 451

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      +  + D+L  + + +   ++    F    K+    
Sbjct: 452 ----------FRFNRGDGAFYGPKIDIHIKDALNRSHQCATVQLD----FQMPEKF---- 493

Query: 299 SATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+     +    V +     G++     +I   + G   +W   +AP +  +I +   
Sbjct: 494 DLTYIDEKNQKVRPVVIHRAVFGSLDRFLGIITEHYGGAFPLW---LAPVQAKIIPVS-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   RD  E+++ ++ K G     D   E++G +   A +   P   +VG +      V 
Sbjct: 549 NTAHRDCAEQVHRQMKKAGIRAELDQRDEKLGYKIREAQMKKIPYIAVVGDQECRHHTVH 608

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++        + S+ + I+   + 
Sbjct: 609 VRQYGQENTFEESVSDFISRIINE 632


>gi|229496081|ref|ZP_04389803.1| threonyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316977|gb|EEN82888.1| threonyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 672

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 156/449 (34%), Gaps = 40/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L          G+  WLP G +    +   +++ Q 
Sbjct: 250 LDEYLAVLEEAKKRDHRKIGKELELFA-FSQTVGAGLPLWLPRGTRLRLRLEDFLKKIQK 308

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
             G  ++  P + + +L+  SG Y  YG +  R     +  +  +  P +     +I+R 
Sbjct: 309 DFGYQQVMTPHIGNIELYKTSGHYAKYGADSFRPITTPQEGEEFMLKPMNCPHHCEIYRI 368

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP    +    +R E      G+ R R F   DA+ F  TPE  K  + K+  
Sbjct: 369 KPHSYRDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQVKDEFLKVMD 427

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               IF  L  ++   +                  D    + +   D           + 
Sbjct: 428 IIFIIFKALKFENFEAQISLR--------------DKNNREKYIGSDENWDRAEQAIIEA 473

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                L ++VE   A +                  K    R  ++G I      Y+LP  
Sbjct: 474 CQEKGLPAVVEYGEAAFYGPKLDF---------MVKDAIGRRWQLGTI---QVDYNLPER 521

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G D + H  V +     G+M    AV+     G+  +W   + P ++ ++ I  
Sbjct: 522 FDLEYTGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGRFPLW---LTPDQVVVLPIG- 577

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   +   K+   L+        DD  E+IG +    +L   P  +IVG++   +  V
Sbjct: 578 --ENFNEYAYKVRDFLANHDITATVDDRNEKIGRKIRDNELKRIPYLLIVGAQESENETV 635

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ +  G +  + L            + 
Sbjct: 636 SVRKQGEGDQGSVKLSTFAEKICQEVDDE 664


>gi|148545068|ref|YP_001272438.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           reuteri DSM 20016]
 gi|148532102|gb|ABQ84101.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           reuteri DSM 20016]
          Length = 601

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 166/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G   + 
Sbjct: 192 EAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGYQHVY 249

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG ++ Y  +M    D  D  M+   P +      +++ HI+SYR+LP
Sbjct: 250 TPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRDLP 309

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +T +  +  + K+    + ++   
Sbjct: 310 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDF 368

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + + + D M     S      D ++L+  
Sbjct: 369 DITDYSFRLSLR--------------DPKNVKKYYANDEMWEKSQSMLKSAMDDLNLD-- 412

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         ++ G DGK
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LSYVGQDGK 464

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   ++   +  + 
Sbjct: 465 EHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTW---LAPEQVHIIPVN--EEAHGEYADD 519

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++      V  D   E++G +   A     P  ++VG    +++ V ++      + 
Sbjct: 520 LAKKMKAANIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQN 579

Query: 428 DMSLEEVINYASHRFSNN 445
           +MS E  +N      ++ 
Sbjct: 580 EMSQEAFMNEILEDIASY 597


>gi|83954081|ref|ZP_00962801.1| threonyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83841118|gb|EAP80288.1| threonyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 649

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 150/449 (33%), Gaps = 59/449 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W   G      +   +R +Q
Sbjct: 234 KAHLNMLEE----AAKRDHRKLGREMDLYHMQEEAPGQVFWHANGWLIYTQLQDYMRRKQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G +E++ P +    LW  SG ++ Y   M  +    + A         P +      
Sbjct: 290 RAGGYVEVNTPQVVDRKLWEASGHWEKYQDHMFIVEVDEEHAREKSVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIEAETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       I+  LG ++  ++    P     S E    A+                 P E
Sbjct: 409 KFIEFLSGIYKDLGFENFSVKFSDRPEKRSGSDEVWDKAEAALLSATRKAGIEPTLNPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--- 292
              +   +                                        +G  +  GT   
Sbjct: 469 GAFYGPKLEFVLTDA---------------------------------IGRDWQCGTHQV 495

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            + LP  + AT+ G+DG K   V +    +G+      ++   H GK   W   +AP ++
Sbjct: 496 DFVLPERLDATYIGSDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQV 552

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + +I +      D   ++ A L   G     D   E+I  +     +   P+ + VG++
Sbjct: 553 VVASITS---EADDYVHEVVATLKAQGVRAEADIRNEKINYKVREHSVGKVPVILAVGAR 609

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            V +  V ++          +L +V N  
Sbjct: 610 EVEEKTVSVRRLGEKQTSVQALSDVANAL 638


>gi|120598308|ref|YP_962882.1| prolyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|152016601|sp|A1RI33|SYP_SHESW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120558401|gb|ABM24328.1| prolyl-tRNA synthetase [Shewanella sp. W3-18-1]
          Length = 571

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R TG ++D+  ++++++  +   +
Sbjct: 545 YKNRRTGEKQDIPFDQLVDFLKNAVKS 571


>gi|194467309|ref|ZP_03073296.1| threonyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194454345|gb|EDX43242.1| threonyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 601

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 166/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G   + 
Sbjct: 192 EAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGYQHVY 249

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG ++ Y  +M    D  D  M+   P +      +++ HI+SYR+LP
Sbjct: 250 TPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRDLP 309

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +T +  +  + K+    + ++   
Sbjct: 310 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDF 368

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + + + D M     S      D ++L+  
Sbjct: 369 DITDYSFRLSLR--------------DPKNVKKYYANDEMWEKSQSMLKSAMDDLNLD-- 412

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         ++ G DGK
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LSYVGQDGK 464

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   ++   +  + 
Sbjct: 465 EHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTW---LAPEQVHIIPVN--EEAHGEYADN 519

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++      V  D   E++G +   A     P  ++VG    +++ V ++      + 
Sbjct: 520 LAKKMKAANIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQN 579

Query: 428 DMSLEEVINYASHRFSNN 445
           +MS E  +N      ++ 
Sbjct: 580 EMSQEAFMNEILEDIASY 597


>gi|86137404|ref|ZP_01055981.1| threonyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85825739|gb|EAQ45937.1| threonyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 648

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 149/442 (33%), Gaps = 53/442 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G K    +   +R  Q
Sbjct: 234 KAHLHMLEE----AAKRDHRKLGREMNLYHMQEEAPGQVFWHPNGWKIYTTLQDYMRRMQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG +D Y + M  +    + A         P +      
Sbjct: 290 ERDGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 VFNQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIESETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K      +++  LG  +  ++  + P     S E   L +        +  +    +  E
Sbjct: 409 KFIAFLSKVYADLGFHNWTIKLSTRPEKRIGSDESWDLVEKALGDACKAAGYEYELLEGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G         +
Sbjct: 469 GAFYGPKLEFTLTD---------------------------AIGRNWQCGT---LQVDPN 498

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + A F GADG  H    +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 499 LPERLEANFIGADGNKHRPFMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 555

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++   L   G     D   E+I  +     L   P+ + +G + V 
Sbjct: 556 SITSD---ADDYVHEVVTELQAAGVRAEADIRNEKINYKVREHSLGKVPVILAIGHREVE 612

Query: 413 DSKVEIKHRLTGIREDMSLEEV 434
           +  V I+          SLE V
Sbjct: 613 ERTVSIRRLGEKQTRVDSLENV 634


>gi|149916340|ref|ZP_01904860.1| threonyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149809794|gb|EDM69646.1| threonyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 663

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 150/449 (33%), Gaps = 53/449 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 KDYLTFLEE----AEKRDHRKLGREMDLFHMQEEAPGQIFWHPNGWTIYTTLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
            R G +E++ P +    LW  SG +D Y + M  +    D A         P +      
Sbjct: 290 RRGGYVEVNTPQVVDRKLWEASGHWDKYQEHMFIVEVDEDHAREKSINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F    +  +    
Sbjct: 350 IFNRGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF-CREDQIEAETK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       I+  LG     ++    P     S +    +++   +   +    DF +   
Sbjct: 409 KFIGFLSEIYRDLGFSDFKVKFSDRPEKRAGSDDVWDKSESA-LKAATAAAGADFELNLG 467

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F        + +                             R  + G        + 
Sbjct: 468 EGAFYGPKLEFVLTD--------------------------AIGRDWQCGT---LQVDFV 498

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + AT+   DG K   V +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 499 LPERLDATYIAEDGAKHRPVMLHRAVLGSFERFIGILIEEHAGKLPFW---MAPRQVVVA 555

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +         + + ARL   G     D   E+I  +     +   P+ +  G K V 
Sbjct: 556 SIVS---EANAYVQDVVARLVAAGVRAEADIRNEKINYKVREHSVGKVPVILACGMKEVE 612

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  V ++           L +V       
Sbjct: 613 DGTVSLRRLGEKQSTVQPLADVTEALKRE 641


>gi|289549510|ref|YP_003470414.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289179042|gb|ADC86287.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 638

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +S+  L    E  R+AE  +H+ +   L+  M  + + G+  +L  GQ   + +   +RE
Sbjct: 224 QSQAQLDDYFEFLREAEARNHRKLGKQLKLFMFSEEAPGMPFYLSNGQFVRNQMENFLRE 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            Q +    E+  P + +  LW ESG +D Y + M      ++      P +      IF+
Sbjct: 284 IQLKNDYDEVRTPLMMNQKLWEESGHWDHYHENMY-FTKVDENDYALKPMNCPGHMLIFK 342

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + ++SY++LP    +     R E      G++R R F   DA+ F +     K     + 
Sbjct: 343 NELRSYKDLPLRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIFIMKS-QIKSEVEDIL 401

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I+   G     +   + P       +    A+     V             +   
Sbjct: 402 KLIDYIYSVFGFTY-SIELSTRPEDYLGELKLWNEAEQSLANVLDELGLKYTINEGDG-- 458

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      +  + D+L  + + +   ++    F    K+    
Sbjct: 459 ------------------AFYGPKIDVHIKDALNRSHQCATVQLD----FQMPEKF---- 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+      K+  V +     G++     ++     G   +W   +AP ++++I +  +
Sbjct: 493 DLTYINEQNEKERPVVLHRAIFGSLDRFFGILIEHFKGAFPLW---MAPVQVNIIGVSDN 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +        K++  L      V  DD  E++G +   + +   P  +++G     ++ V 
Sbjct: 550 NTA---YVNKVFEALQNNNIRVVIDDRDEKLGKKIRESQMKKIPYTLVLGDHEQENNVVS 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +       E M ++  I        + 
Sbjct: 607 ARKYSHEDNELMDIQAFIAQLQEEVESK 634


>gi|195147146|ref|XP_002014541.1| GL19239 [Drosophila persimilis]
 gi|198473694|ref|XP_001356405.2| GA18821 [Drosophila pseudoobscura pseudoobscura]
 gi|194106494|gb|EDW28537.1| GL19239 [Drosophila persimilis]
 gi|198138068|gb|EAL33469.2| GA18821 [Drosophila pseudoobscura pseudoobscura]
          Length = 754

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   I+ E  + 
Sbjct: 341 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFIKSEYRKR 400

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M       +K     P +      IF +  +S
Sbjct: 401 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDTRNRS 459

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 460 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKH 518

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 519 VYTIFGFTFQLV-LSTRPEKYLGELEQWNDAEKALEESLNEFGMPWKENPGDG------- 570

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L     + 
Sbjct: 571 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----NYI 609

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +        
Sbjct: 610 ADDGEKKRPVIIHRAILGSVERMIAILTENYAGK---WPFWLSPRQVMVVPVGP---AYD 663

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 664 QYAQTVKDQLHAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 723

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 724 DNKVHGEVSVSELITKLQK 742


>gi|73951031|ref|XP_857184.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 3
           [Canis familiaris]
          Length = 711

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 158/446 (35%), Gaps = 44/446 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + +       H  S G   +LP G    + +   IREE +R
Sbjct: 295 MMKTWEKFQEEAKNRDHRKVGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHR 354

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + ++ LW  SG +  Y + M    D         P +      +F    +
Sbjct: 355 RNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAHRPR 413

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R +P       +  R+EL     G+ R R F   DA+ F  T E  +           
Sbjct: 414 SWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQ 472

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 473 SVYSTFGFSF-QLNLSTRPENFLGEVELWDEAEKQLQNSLVEFGKPWKMNPGDG------ 525

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L    T+
Sbjct: 526 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TY 563

Query: 303 KGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG  K + V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      
Sbjct: 564 VSKDGDDKRNPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---T 617

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V ++
Sbjct: 618 CEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNVR 677

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R   I  ++S+   I+   +   + 
Sbjct: 678 TRDNKIHGEISVTSAIHKLKNLKKSR 703


>gi|126650283|ref|ZP_01722511.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126592933|gb|EAZ86915.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 637

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 162/443 (36%), Gaps = 41/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +YF+ + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q 
Sbjct: 230 LQQYFVFLDEAEKRNHRKLGKELSLF--MFSEEAPGMPFYLANGQILRNELESYLRNLQA 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P + +  LW +SG +D Y   M      +D++    P +      IF++ +
Sbjct: 288 KYDYREVRTPLMMNQRLWEQSGHWDHYKDNMY-FTQVDDQSFALKPMNCPGHMLIFKNSL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F  TP+  ++         
Sbjct: 347 HSYRDLPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-ATPQQIENEIALALKII 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G +   +   + P                           D    +      +
Sbjct: 406 DEVYNVFGFQY-SVELSTRP-----------------DDYMGELSLWDQAEEALENVLTN 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +I E   A Y    D+H +   D++  + + +   ++    F    K+      T
Sbjct: 448 LGIDYTINEGDGAFYGPKIDIHIK---DAIQRSHQCATVQLD----FQLPEKF----DLT 496

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +     +    V +     G++     ++     G   IW   +AP ++ +I +      
Sbjct: 497 YINEHNEKVRPVVIHRAVFGSIDRFLGILIEHFGGAFPIW---LAPQQVQVIAVA---DA 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +D  +++   L      V  DD  E++G +   A L   P  +++G +  +   V ++ 
Sbjct: 551 HQDYAKQVVKALQHEQIRVQLDDRQEKLGKKIREAQLHKIPYILVIGDRETAHQNVSVRR 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
                  + S+ ++I   +    
Sbjct: 611 HGQQATVEYSISQLIEEMTEAIK 633


>gi|195387892|ref|XP_002052626.1| GJ17652 [Drosophila virilis]
 gi|194149083|gb|EDW64781.1| GJ17652 [Drosophila virilis]
          Length = 745

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 158/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +  +IR E  + 
Sbjct: 332 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMNLIRGEYRKR 391

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y   M       +K     P +      IF +  +S
Sbjct: 392 GFQEVISPNIYNAKLWMTSGHWQHYADNMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 450

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 451 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLDFLRH 509

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 510 VYTIFGFSFQLV-LSTRPDKYLGELEQWDAAEKALAESLNEFGMPWKENPGDG------- 561

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L     + 
Sbjct: 562 -------------AFYGPKIDITIMDALKRPFQCATIQLD----FQLPIRFNL----NYI 600

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +        
Sbjct: 601 ADDGEKKRPVIIHRAILGSVERMIAILTENYAGK---WPFWLSPRQVMVVPVGP---AYD 654

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 655 EYAKSVRDQLYAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 714

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 715 DNKVHGEVSVAELITKLQK 733


>gi|158422571|ref|YP_001523863.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|158329460|dbj|BAF86945.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 636

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 153/447 (34%), Gaps = 48/447 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G+  W P G      + + +R     
Sbjct: 210 YLHRLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHPKGWSLFQGLVSYMRRRLK- 264

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M ++        +++     P +      IF
Sbjct: 265 ADYNEVNAPQVLDKSLWETSGHWGWYKENMFKVQSAGEETGDERVFALKPMNCPGHVQIF 324

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F  T E       K+
Sbjct: 325 KHGLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHVF-CTEEQMAAECLKI 383

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G + I ++  + P     S     + D  E     S+        S   
Sbjct: 384 NDLILSTYADFGFEEITVKLSTRPEKRVGSD---AVWDHAED--VMSRVLKQIEAESGGR 438

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I+            Y  +                    R  + G        ++LP
Sbjct: 439 IKTGILPGEGAFYGPKFEYTLSDA----------------IGREWQCGTT---QVDFNLP 479

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A +  ADG+    V +     G+M     ++     G   +W   +AP ++++  I
Sbjct: 480 ERFGAFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLW---LAPVQLAVCTI 536

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               Q   D   ++ +    +   V  D   E+I  +     L   P+Q  +G K  ++ 
Sbjct: 537 T---QEADDYAAEVASAARALDLKVELDTRNEKISYKVREHSLAKIPVQFALGKKEAAER 593

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V I+   +  ++ + LEE +   +  
Sbjct: 594 TVSIRRLGSQEQKVLPLEEALKLLADE 620


>gi|196247600|ref|ZP_03146302.1| Proline--tRNA ligase [Geobacillus sp. G11MC16]
 gi|196212384|gb|EDY07141.1| Proline--tRNA ligase [Geobacillus sp. G11MC16]
          Length = 271

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 117/225 (52%), Positives = 161/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P DAE+ SH+L+LR G + Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQGFIPTFREVPADAEVKSHQLLLRAGFVRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++  + GPTHEE++T I R 
Sbjct: 61  MNRAGALELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFVLGPTHEEMITTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLILYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S 
Sbjct: 181 YANIFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSD 225


>gi|171057265|ref|YP_001789614.1| prolyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|226701306|sp|B1XYW5|SYP_LEPCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170774710|gb|ACB32849.1| prolyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 581

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SH+LM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MKASQFFIATLKEAPADAEVKSHQLMMRAGMIKRLGAGIYNYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+D  G E+LR+ DR+D+  I  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRFDKMGPELLRVKDRHDRDFIIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD     +  SY+ MF +
Sbjct: 121 ELRSYKQLPKNFYHIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAASAARSYDAMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A++G IGGDLSHEF V+ADTGE  +   
Sbjct: 181 YKRIFDRFGLQYRAVAADTGAIGGDLSHEFQVIADTGEDAIVYC 224



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 3/213 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              +  D         +      A +D+ N    D  P+ +      RGIEVGH+F+ GT
Sbjct: 369 CGANEIDFHLTGINWGRDLPEPDAVADIRNVVEGDPSPDGQGVLAIQRGIEVGHVFFLGT 428

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+AT+   +GK  +++MG YGIG  R++ A IE  HD +GI+WPD++APF + + 
Sbjct: 429 KYSKAMNATYLDENGKPQFMEMGCYGIGVTRILGAAIEQKHDARGILWPDAIAPFTVVVC 488

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I        + A + ++  L   G DV  DD GE+ G+ FA  +L+G P +V++  + +
Sbjct: 489 PIGYDRSAEVKAAADALHDELQAAGIDVMLDDRGERPGAMFADWELIGVPHRVVISDRGL 548

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +VE + R       +   EV  +   R  +
Sbjct: 549 KAGQVEYQGRCDEAASTVPAAEVAAFVKGRLRS 581


>gi|166365884|ref|YP_001658157.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088257|dbj|BAG02965.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 599

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 167/448 (37%), Gaps = 51/448 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 187 EEALKRDHRKLGKELGLFI-FSDSVGPGLPLWTPKGTLIRSLLEDFLKKEQLKRGYLPVV 245

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  +   ++++       +  P +      I++S ++S
Sbjct: 246 TPHIARVDLFKISGHWQKYKEDMFPMMADDEESAGKEIGFVLKPMNCPFHIQIYKSDLRS 305

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F +TPE     +  +    L 
Sbjct: 306 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDKEFLSVVDLILT 364

Query: 184 IFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +F  L LK+   R        D    S E    A +   +   +     F  P E   + 
Sbjct: 365 VFKSLQLKNFKARLSFRDPESDKYIGSDEAWEKAQSAIRKAVQTLGMDYFEAPGEAAFYG 424

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               +    R  ++G +      Y+LP   
Sbjct: 425 PKLDF---------------------------IFQDALEREWQLGTV---QVDYNLPERF 454

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG +   V +     G++  +  ++   + G   +W   +AP +I L+ +   
Sbjct: 455 ELEYVAEDGNRKRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPVQIRLLPV--- 508

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++ A++  +G     D  GE++G     A+    P+  +VG+K +  + + 
Sbjct: 509 SDTQLDYAKEVTAKMQLLGIRAETDTSGERLGKMIRNAETAKIPVMAVVGAKEMESNSLS 568

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R TG    +S+EEV+        N+
Sbjct: 569 IRTRATGDLGVISVEEVVAKLESAIQNH 596


>gi|161621298|ref|YP_585241.2| prolyl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|114152237|sp|Q1LIQ4|SYP_RALME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 573

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI R+
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDIDGLKASYQNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 7/202 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF   + + D+        +      P  A +D+ N    D+ P+ K      RGI
Sbjct: 355 ANMSDFCCGANDRDYH----YTGVNWGRDLPEPAVADLRNVVAGDASPDGKGTLDICRGI 410

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GT+YS  M+ATF   +GK   +QMG YGIG  R++ A IE ++D +GIIWP 
Sbjct: 411 EVGHVFMLGTRYSESMNATFLDENGKTQPMQMGCYGIGVTRILGAAIEQNYDERGIIWPA 470

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF + +  +    ++  +   ++I+A L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 471 AIAPFAVVVCPVGYDRNEAVKAEADRIHAELLAAGVDVILDDRGERPGVMFADWELIGVP 530

Query: 402 LQVIVGSKFVSDSKVEIKHRLT 423
            +V+VG + + + KVE + R  
Sbjct: 531 HRVVVGDRGLKEGKVEYQGRRD 552


>gi|301155393|emb|CBW14859.1| prolyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 571

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MDKSGALEIKMPVVQPAELWEESGRWEQYGPELLRFEDRGNRHFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EVSSYRQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHADHASLQQTYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA++GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFS 224



 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DG+   V MG YGIG  RVVAA IE   D +GI+WP D +APF ++++ +  H
Sbjct: 424 NATVQGEDGRPMVVTMGCYGIGVTRVVAAAIEQHFDERGIVWPTDEIAPFTVAVVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  ++  E++Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQEYAEELYRTLQAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++++   +  
Sbjct: 544 EYKNRRTGEKQMIAKDQLLDFLKGQIK 570


>gi|260575744|ref|ZP_05843741.1| threonyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259022142|gb|EEW25441.1| threonyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 648

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 148/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G+  W P G +    +   +R  Q  
Sbjct: 234 KAHLTMLEEAAKRDHRRLGKEMDLF--HLQEEAPGMVFWHPNGWQVWRTLEDYMRRRQRE 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG +++Y + M  +    +     +     P +      ++
Sbjct: 292 AGYREIRTPQVVDRVLWERSGHWEAYRENMFIVEVDEEGAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   DA+ F  T    +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGACHRYESSGSMHGLMRVRGFTQDDAHIF-CTEAQIESECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++H LG +S  ++  + P     + E     +T                P E  
Sbjct: 411 IELLSSVYHDLGFESFDIKLSTRPEVRIGTDEDWDRVETALENAIKKVGRSYVIDPGEGA 470

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +                                    R  + G  F         
Sbjct: 471 FYGPKLDFKLTD---------------------------AIGRQWQCGT-FQVDPNLPSR 502

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + G DG  H    +    +G+      ++  ++ GK   W   +AP ++ +  I +
Sbjct: 503 LGAEYIGEDGARHRPFMLHRAILGSFERFLGILIENYAGKLPFW---LAPRQVVVAGIVS 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A L K G     D   E+I  +     +   P+ + +G K V +  V
Sbjct: 560 D---ADAYVHEVVAELRKAGVRAEADVRNEKINYKVREHSVGKVPVILAIGMKEVEERSV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++       +  SL  ++   +H 
Sbjct: 617 SVRRLGETRTDSESLTGIVATLAHE 641


>gi|126175060|ref|YP_001051209.1| prolyl-tRNA synthetase [Shewanella baltica OS155]
 gi|166980155|sp|A3D6H7|SYP_SHEB5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125998265|gb|ABN62340.1| prolyl-tRNA synthetase [Shewanella baltica OS155]
          Length = 571

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  +++++   +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDLLKNAVK 570


>gi|269123175|ref|YP_003305752.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314501|gb|ACZ00875.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 633

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 168/446 (37%), Gaps = 43/446 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           S+  L    +   +AE   H+ + +      I +H  G   ++P G +  + +  + R E
Sbjct: 222 SQDELDAYIKQVEEAEKRDHRKLGKQLNLFFIDEHGPGFPFFMPKGMRLFNRLQQLWRIE 281

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+  P +   +LW  SG + +Y + M  +++ ++K     P +       +++
Sbjct: 282 HNKQGYDEIRTPIMLDKELWEISGHWFNYRENMY-VSEIDEKVYAIKPMNCPGSIIAYKN 340

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           ++ SY++LP  + ++    R E      G+MR R F   DA+ F  TP+  K S  ++  
Sbjct: 341 NLHSYKDLPLKYAEMGHVHRHEFSGALHGLMRVRAFTQDDAHVF-CTPDQIKDSIKEIVN 399

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y + +   G     +   + P       +   +++    +     +        +   +
Sbjct: 400 LYDKYYKLFGFDF-HVELSTKPEKAVGDAKVWEISERALEETLKELNIDYRINAGDGAFY 458

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I                               K    R  + G I           +
Sbjct: 459 GPKIDFK---------------------------MKDSIGRIWQTGTI-QLDMNLPKRFN 490

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ I    
Sbjct: 491 MSYIGKDGEKHETVMIHRAMFGSLERFIGILIEHYAGAFPVW---LAPTQVKIMTI---S 544

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVE 417
               +   K++ +L  +G     D   E+IG +   A+     P+Q+++G   V ++ V 
Sbjct: 545 AEQVEYATKLHKKLIDLGIYSELDIRDEKIGYKIREANGEQKIPVQLVIGKNEVLENTVN 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++   +      +++E IN      +
Sbjct: 605 VRRFGSTDSVTKNVDEFINELLDEIN 630


>gi|83942907|ref|ZP_00955367.1| threonyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83845915|gb|EAP83792.1| threonyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 649

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 150/449 (33%), Gaps = 59/449 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W   G      +   +R +Q
Sbjct: 234 KAHLNMLEE----AAKRDHRKLGREMDLYHMQEEAPGQVFWHANGWLIYTQLQDYMRRKQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G +E++ P +    LW  SG ++ Y   M  +    + A         P +      
Sbjct: 290 RAGGYVEVNTPQVVDRKLWEASGHWEKYQDHMFIVEVDEEHAREKSVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIEAETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       I+  LG ++  ++    P     S E    A+                 P E
Sbjct: 409 KFIEFLSGIYKDLGFENFSVKFSDRPEKRSGSDEVWDKAEAALLSATRKAGIEPTLNPGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--- 292
              +   +                                        +G  +  GT   
Sbjct: 469 GAFYGPKLEFVLTDA---------------------------------IGRDWQCGTHQV 495

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            + LP  + AT+ G+DG K   V +    +G+      ++   H GK   W   +AP ++
Sbjct: 496 DFVLPERLDATYIGSDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQV 552

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + +I +      D   ++ A L   G     D   E+I  +     +   P+ + VG++
Sbjct: 553 VVASITS---EADDYVHEVVATLKAQGVRADADIRNEKINYKVREHSVGKVPVILAVGAR 609

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            V +  V ++          +L +V N  
Sbjct: 610 EVEEKTVSVRRLGEKQTSVQALSDVANAL 638


>gi|163740958|ref|ZP_02148351.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385949|gb|EDQ10325.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 648

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 150/447 (33%), Gaps = 53/447 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G K    +   +R  Q
Sbjct: 234 KAHLHMLEE----AAKRDHRKLGREMNLFHMQEEAPGQIFWHPNGWKIYTTLQDYMRRMQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
           +R G +E++ P +    LW  SG +D Y + M  +    D A         P +      
Sbjct: 290 DRDGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 VFNQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIESETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K      +++  LG     ++  + P     S E   L +        +  +    +  E
Sbjct: 409 KFIAFLSKVYADLGFHDWTIKLSTRPEKRIGSDESWDLVEKALGDACKAAGYEYELLEGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G         +
Sbjct: 469 GAFYGPKLEFTLTD---------------------------AIGRNWQCGT---LQVDPN 498

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + A F G DG K     +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 499 LPERLDANFIGQDGSKHRPFMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 555

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++   L   G     D   E+I  +     +   P+ + VG + V 
Sbjct: 556 SITSD---ADDYVNEVVETLRAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVE 612

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  V ++       +  +LE V    +
Sbjct: 613 ERTVSVRRLGEKQTKVEALEAVTKALA 639


>gi|148887021|sp|Q0VRL1|SYP_ALCBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 572

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 154/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE
Sbjct: 1   MRTSQYLLATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +
Sbjct: 121 ELHSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 YCAIFDRLGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFSD 225



 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 4/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+        RGIEVGHIF  GTKYS  +
Sbjct: 364 DGKHYFNINWERDVALPQIADLRNVVDGDPSPDGSGTLTIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
            AT    +GK   + MG YGIG  RVVAA IE ++D +GIIWP+++APF+++L+ +    
Sbjct: 424 GATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGIIWPEAIAPFQVALVPVNIKK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
               R+  EK+YA L+ +G +V +DD   E++G + A  +LLG P ++++  + + +  +
Sbjct: 484 SPRERELAEKLYAELTAMGIEVLFDDREKERLGVKLADTELLGIPHRIVIAERGMDNGVL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
           E K R    + +++++E++ +   + 
Sbjct: 544 EYKGRRDADKTEVAMDEIVAFLKEKM 569


>gi|103486185|ref|YP_615746.1| threonyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|123380057|sp|Q1GVA9|SYT_SPHAL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|98976262|gb|ABF52413.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Sphingopyxis
           alaskensis RB2256]
          Length = 667

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 150/455 (32%), Gaps = 52/455 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +++ + + +   RD      ++ L    + Q + G   W P G      + A +R   
Sbjct: 237 QLAEHLVRLEEAAKRDHRRLGQEMDLF--HLQQEAHGSVFWHPNGFVVWRELEAYMRRAI 294

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGP 108
           +  G  E+  P +  A  W +SG +  Y + M  + D              + + M   P
Sbjct: 295 DAAGYREVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNTEDEGPIVSDDAEWMALKP 354

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      IFR  +KSYR+LP   Y+     R+E      G+MR R+F   DA+ F    
Sbjct: 355 MNCPAHVLIFRQGMKSYRDLPLRLYENGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CRE 413

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +              RI+   G     ++    P     S     + D  E ++  +   
Sbjct: 414 DQIVEEVRNFCALADRIYKDFGFTY-AIKLALRPEKRFGSD---AMWDKSEDELRNAVIE 469

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     +           +       A                     R  +VG I
Sbjct: 470 AGLATEQYGWEELPGEGAFYAPKLEWHLTDA-------------------IGRTWQVGTI 510

Query: 288 FYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
               +   LP  + A++ G DG+ H  V +     G+      ++     G+   W   +
Sbjct: 511 ---QSDRVLPDRLDASYIGEDGERHRPVMLHRAIFGSYERFIGILIEHFVGRFPTW---L 564

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP +  +  I +      D  +   ARL   G     D   E+I  +     L   P  +
Sbjct: 565 APVQAVVATIVSD---ADDYAKAATARLVAAGIRTESDLRNEKINYKVREHSLAKVPHLL 621

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +VG +   +  V I+      +  M L E I    
Sbjct: 622 VVGKREAEEGTVAIRTLGQDGQRIMPLAEAIAMLK 656


>gi|294673346|ref|YP_003573962.1| threonine--tRNA ligase [Prevotella ruminicola 23]
 gi|294474289|gb|ADE83678.1| threonine--tRNA ligase [Prevotella ruminicola 23]
          Length = 648

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 166/456 (36%), Gaps = 54/456 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAII 57
           +    +L +L+E    A+   H+ + +         +  KG+  WLP G +    +   +
Sbjct: 229 KMLDEYLEMLEE----AKKRDHRKIGKEMELFMFSEKVGKGLPIWLPKGTELRLRLQDHL 284

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMT 115
           R+ Q R G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     
Sbjct: 285 RKVQKRFGYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHC 344

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +IF    +SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  +
Sbjct: 345 EIFAWKPRSYRDLPLRIAEFGTVYRYEQSGELHGLTRVRSFTQDDAHLF-CRPDQVKQEF 403

Query: 175 NKMFVSYLRIFHRLGLKS---IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +      +    G      I +R  +       + E   LA+    +    K      
Sbjct: 404 LNVMDIIGIVLTAFGFNFEAQISLRDPNDHDKYVGTDEDWALAEKAIVEACQEKGLPAKV 463

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
              E   +   +                               K    R  ++G I    
Sbjct: 464 EYGEAAFYGPKLDF---------------------------MIKDAIGRRWQLGTI---Q 493

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y+LP   +  +   D  K   V +     G+M    AV+     G   +W   + P +
Sbjct: 494 VDYNLPKRFNLEYTDEDNQKKTPVMIHRAPFGSMERFCAVLIEHTSGHFPLW---LTPDQ 550

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +    +   D  +++  +    G     D   E++G +    +L   P  VIVG 
Sbjct: 551 VAILPL---SEKYNDYAQEVAKKFDMGGVRATVDMRNEKLGRKIRDNELKRIPYMVIVGE 607

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           K  ++  V ++ +  G +   +++E I+  + R + 
Sbjct: 608 KEAAEGTVAVRPQGGGEQSVKTIQEFIDEVNARVAE 643


>gi|300715419|ref|YP_003740222.1| Prolyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299061255|emb|CAX58364.1| Prolyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 572

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNVFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHASQESLQATYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSQSFKRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFS 224



 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  Q   P     D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGKHFTGINWQRDLPLPRVEDIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  R+VAA IE +HD +GIIWP ++APF+++++ +  H 
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGITRIVAASIEQNHDERGIIWPAALAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA+L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYAQLRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R  G +  +   E++++     +
Sbjct: 546 YKSRREGEKRMIKTGEILDFLVSEIN 571


>gi|88798124|ref|ZP_01113711.1| prolyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88779321|gb|EAR10509.1| prolyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 573

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA I SHKLMLR G++ + + G+Y+WLP G++ L+ +  IIREE
Sbjct: 1   MRASRYLLATVKETPADAVIVSHKLMLRAGLVRKLASGLYNWLPTGRRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +PT+Q A+LW ESGR D    +ML++ DR+ +  +YGPTHEEV+TDI R+
Sbjct: 61  LDRSGAQEVLMPTIQPAELWEESGRIDKMEGQMLKMQDRHQRDFVYGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREF+MKD YSF +  E     Y+ M+ +
Sbjct: 121 ELTSYKQLPMNFYQIQNKFRDEFRPRFGVMRSREFVMKDGYSFHVDQECLNKEYDNMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL   P+ A++G +GG  SHEF VLAD+GE  +  S
Sbjct: 181 YCRIFDRLGLDYRPVLADTGAMGGSASHEFQVLADSGEDYIVYS 224



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 111/206 (53%), Gaps = 5/206 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +      A  D+ N    D  P+ +      +GIEVGHIF  G  YS  +
Sbjct: 366 DGKHYFNINWERDVALPAVEDLRNVVEGDPSPDGQGTLKILKGIEVGHIFQLGDTYSKSL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A     +GK   +QMG YGIG  R+VAA IE +HD  GIIWPD++APF + ++ + AH 
Sbjct: 426 KAEVLDQNGKSQAMQMGCYGIGVTRIVAAAIEQNHDENGIIWPDAIAPFHVGIVPLNAHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                +  EK+YA L   G DV  DD  ++   G +FA  +L+G P +++V  + ++D K
Sbjct: 486 SPEVMEVAEKLYADLQAAGYDVLLDDRDKKTSPGVKFADMELVGVPHRIVVSDRGLADGK 545

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           VE K R    +E+++L +++ +   +
Sbjct: 546 VEYKARRASDKEEIALTDILAHIQQQ 571


>gi|257453020|ref|ZP_05618319.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|257467420|ref|ZP_05631731.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 593

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 25  MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 85  MDRAGSQELLMPVLQPAELWQESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 145 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S       
Sbjct: 205 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYSDGCSYAA 255



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  SARGIE GHIF  G KYS  + A++    G+   + MG YGIG  R +AA IE ++D
Sbjct: 424 KLHSARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYGIGVGRTMAAAIEQNYD 483

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GIIWP ++AP+ + +I     +       EKIY +L+    D   DD  E+ G +F  
Sbjct: 484 EHGIIWPSALAPYLVDVIPANIKNAEQMQLAEKIYEQLNAEHLDAMLDDRDERPGFKFKD 543

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ADL+GFP +VI G K  +++ VE+K R TG   ++ ++E+I+     
Sbjct: 544 ADLIGFPFKVICGKK-AAENIVELKIRKTGETFEIPVDEIISKIKDL 589


>gi|114563918|ref|YP_751432.1| prolyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122299171|sp|Q07ZH1|SYP_SHEFN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114335211|gb|ABI72593.1| prolyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 571

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYTWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGAIE+ +P +Q ADLWVE+GR+D +G E+LR  DRN++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKTGAIEILMPLVQPADLWVETGRWDKFGPELLRFQDRNNRDFVLGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+Q KFRDE+RPRFGVMR+REFLMKDAYSF L  E   ++Y+ M  +
Sbjct: 121 ELSSYKQLPLTLYQVQTKFRDEVRPRFGVMRAREFLMKDAYSFHLDQETMDNTYHAMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YSNILTRMGLSFRPVLADTGSIGGSMSHEFHVLANSGEDLIAYS 224



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 107/215 (49%), Gaps = 3/215 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             DF   +   D                     + V  E   D L        RGIEVGH
Sbjct: 355 MSDFAAGANAEDKHYFGINWDRDLPLATAADIRNVVEGEPTPDGLGTYAMA--RGIEVGH 412

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           IF  GT YS  M+AT    +GK   + MG YG+G  R+VAA IE ++D +GI WP+++AP
Sbjct: 413 IFQLGTSYSKSMNATVLDENGKAQVLLMGCYGVGVSRIVAAAIEQNNDDRGITWPEAIAP 472

Query: 347 FKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           F + ++ +  H      D  EK+Y  L+  G +V  DD  E+ G  FA  +L+G P  V+
Sbjct: 473 FTVGILPMNMHKSHRVADIAEKLYQDLADAGVEVLMDDRKERPGVMFADMELIGLPHVVV 532

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G + +     E K+R TG ++D+  +E++ + ++
Sbjct: 533 IGDRNIDAGVFEYKNRRTGEKQDIPFDEIVAFLTN 567


>gi|113461448|ref|YP_719517.1| prolyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123031424|sp|Q0I4S8|SYP_HAES1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112823491|gb|ABI25580.1| prolyl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 571

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPNDAQVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ES R++ YG E+LR  DR ++  + GPTHEEV+TD+   
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESQRWEQYGPELLRFVDRGNRDFVLGPTHEEVITDLVHR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  +++Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKECLQNTYDVMYRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +  S +     
Sbjct: 181 YNNIFTRLGLDFRAVQADTGSIGGSASHEFQVLAKSGEDDIVFSSNSDYAA 231



 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWDRDVALPKVADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKA- 356
            AT +G DG+   + MG YGIG  RVVAA IE  HD KGIIW  D +APF +++I +   
Sbjct: 424 KATVQGEDGRPQTMIMGCYGIGVSRVVAATIEQCHDEKGIIWSSDEIAPFTVAIIPMNMY 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L     DV +DD  E+ G  FA  +L+G P  +++G K +   ++
Sbjct: 484 KSKNVQIFAEELYQSLLNKNVDVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ E+V+++ + R +
Sbjct: 544 EYKNRRTGEKQIIAKEQVLDFLAQRVN 570


>gi|160876111|ref|YP_001555427.1| prolyl-tRNA synthetase [Shewanella baltica OS195]
 gi|189083513|sp|A9KVR8|SYP_SHEB9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160861633|gb|ABX50167.1| prolyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315268308|gb|ADT95161.1| prolyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 571

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+   +   ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQVADIRNVVEGEPTPDGSGIYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  ++++++  +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDFLKNAVK 570


>gi|77735697|ref|NP_001029542.1| threonyl-tRNA synthetase, cytoplasmic [Bos taurus]
 gi|110287979|sp|Q3ZBV8|SYTC_BOVIN RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73586669|gb|AAI03083.1| Threonyl-tRNA synthetase [Bos taurus]
 gi|296475710|gb|DAA17825.1| threonyl-tRNA synthetase [Bos taurus]
          Length = 723

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 154/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LWV SG ++ Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIYNSRLWVTSGHWEHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRVADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                 P +      
Sbjct: 484 RTVYSIFGFSF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLNDFGEKWELNPGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKKPVIIHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +       V  D D G  +  +   A L  +   ++VG K  +   V I+ 
Sbjct: 631 DEYAQKVRQQFHNAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 691 RDNKVHGERTISETIERLQQL 711


>gi|82523942|emb|CAI78664.1| prolyl-tRNA synthetase [uncultured delta proteobacterium]
          Length = 574

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 125/231 (54%), Positives = 164/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E P DAE+ SHKLM+R GMI + + GIYS+LPLG + +  V  I+REE
Sbjct: 1   MRYSEMHLPTLREIPSDAEVVSHKLMIRAGMIRKLTSGIYSYLPLGYRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +Q ++LW ESGR+  YGKE+LR  DR+D+   +GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAQEVFMPMVQPSELWEESGRWVHYGKELLRFRDRHDRPYCFGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD    G+++SY KMF +
Sbjct: 121 DVKTYRQLPLNLYQIQTKFRDEVRPRFGVMRCREFGMKDAYSFDADEAGAQNSYEKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL+  P+ A+SG IGG  SHEF+V+AD+GE  +   +      
Sbjct: 181 YNNIFRRCGLRFRPVEADSGSIGGKYSHEFMVMADSGEDAMVFCEKCSYAA 231



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 105/181 (58%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E         K   ARGIEVGH+F  GTKYS  M A +   DG++  + MG YGIG  R
Sbjct: 388 EENDSCPRCAGKIKFARGIEVGHVFKLGTKYSKAMKAVYLDKDGQEKVMIMGCYGIGIGR 447

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA IE ++D +GI+WP  +AP+ + +  +  +D+   D  E +Y ++     +V  DD
Sbjct: 448 TVAACIEQNYDDQGIVWPVPLAPYHVIITPVNVNDKSISDVAENLYNKMQDKKIEVILDD 507

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +F  ADL+G PL+V++G K ++ +KVE+K R TG  + ++++E++N      +
Sbjct: 508 RDERAGVKFNDADLIGIPLRVVIGQKNLAQNKVELKIRKTGENKLIAVDEIVNEVKEFVN 567

Query: 444 N 444
            
Sbjct: 568 K 568


>gi|312877991|ref|ZP_07737931.1| prolyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795226|gb|EFR11615.1| prolyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 572

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 162/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKSCGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
             +  N  +++    Y        E
Sbjct: 241 TPVENNEELKEKQEVYTPNVRTIEE 265



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 3/223 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +  TD+   I   ++ +     +A   ++  + L       K    RGIEV
Sbjct: 349 KYLKNFVVGANKTDYH--IKNVNLSDFKVTKFADLRNITQDDLCPKCRSQKVTIERGIEV 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKY+   +  +    G+   + MG YGIG  R  AA+IE  HD  GIIWP +V
Sbjct: 407 GHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCYGIGINRTAAAIIEQMHDEDGIIWPITV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +   D+       +IY  L K G +V  DD  E+ G +F  ADL+G P +V
Sbjct: 467 APYEVIIVPVNVKDEAQNKIAFEIYENLQKNGVEVLIDDRDERAGVKFKDADLIGIPFRV 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            VG K VS+ K+EI++R T    ++ ++  + +  +     + 
Sbjct: 527 TVGKK-VSEGKLEIRNRRTKESFEVEIDNAVEFIINLIKQEKA 568


>gi|256026433|ref|ZP_05440267.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289764445|ref|ZP_06523823.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289716000|gb|EFD80012.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 637

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 83/433 (19%), Positives = 165/433 (38%), Gaps = 46/433 (10%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    + ++  G   +LP G    + +  + R+E  + G +++  P 
Sbjct: 236 EAEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLVDLWRKEHEKAGYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y + M   ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNYRENMYT-SEIDEVEFAIKPMNCPGGVLAFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TP+  +     +     + + +L    
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNLIDKFYSKLFGFE 413

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P     S E   +A++                P +   +   +         
Sbjct: 414 YEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGDGAFYGPKLDFK------ 467

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH 310
                                 K    R  + G I      ++LP     T+ G DG+ H
Sbjct: 468 ---------------------IKDAIGRMWQCGTI---QLDFNLPERFDVTYIGEDGEKH 503

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++     ++   + G   +W   +AP ++ ++ I      C    ++I 
Sbjct: 504 RPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVMTIN---DECVPYAKEIM 557

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           A+L K+G     DD  E IG +   A+     P+Q+I+G   V + +V I+   +  +  
Sbjct: 558 AKLDKLGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNIRRFGSKDQFS 617

Query: 429 MSLEEVINYASHR 441
            SL+E  NY    
Sbjct: 618 KSLDEFYNYVVDE 630


>gi|237740439|ref|ZP_04570920.1| threonyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229422456|gb|EEO37503.1| threonyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 637

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 166/445 (37%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD       L L    I ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKFMEEAEKRDHRKLGKDLELF--FISEYGPGFPFFLPKGMVFRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             R + +L      +   + P     S E   +A++                P +   + 
Sbjct: 402 IDRFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGDGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      ++LP   
Sbjct: 462 PKLDFK---------------------------IKDAIGRMWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ +   
Sbjct: 492 DVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTLN-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKV 416
              C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V
Sbjct: 547 -DECIPYAKEIMDKLQELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEVENKEV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +   SL++  +Y    
Sbjct: 606 NIRRFGSKDQFSKSLDDFYDYVVDE 630


>gi|91201672|emb|CAJ74732.1| strongly similar to threonyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 640

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 160/445 (35%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD       L L +        G+  W P G +    +    R+E  R
Sbjct: 228 KKYLKMLEEAEKRDHRKIGKDLDLFSFH-EDGGAGLAFWHPKGARMRSIIEDFWRQEHFR 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   +LW  SG +D Y + M    D +    I  P +      I+++ + 
Sbjct: 287 RGYEILYSPHIAKINLWKTSGHWDFYRESMYSPIDVDGHEYILKPMNCPFAVLIYKTKLH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + ++   +R E      G++R R F   DA+ F  TP+  +    ++     
Sbjct: 347 SYRDLPLRWGELGTVYRYERSGVLHGLLRVRGFTQDDAHIF-CTPDQLEQEILEVIKLAQ 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G     +                     GE + +  +D +            + 
Sbjct: 406 FMLSSFGFNEYEIELSVR--------------GKGEKEKYIGRDDVWDHAEDALKIALEK 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             L+    +  A +       + K+ D++    +     ++    F    ++       +
Sbjct: 452 TGLHYTRMEGEAKF--YGPAIDIKVKDAIGRGWQGPTIQVD----FNLPERF----DVNY 501

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DG  H V M     +GAM      +     G   +W   +AP ++ +++I       
Sbjct: 502 VGSDGYHHRVVMIHRTVMGAMERFIGCLIEHFAGDFPLW---IAPIQMRILSIT---DAQ 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   L      V  D    +IG +     L   P  +IVG+K + +  V ++ R
Sbjct: 556 IDYAKKLQTELLLKNFRVECDIGNNKIGYKIREGTLQKIPYLLIVGNKEMEEGLVAVRSR 615

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
             G    + + + I+         +
Sbjct: 616 KNGDEGALPVRDFISKVEEEVRGKK 640


>gi|325577191|ref|ZP_08147675.1| proline--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160773|gb|EGC72894.1| proline--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 571

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MDKSGALEIKMPVVQPAELWEESGRWEQYGPELLRFEDRGNRHFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVSSYRQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHADHSSLQQTYEVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA++GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIFS 224



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
           +AT +G DG+   V MG YGIG  RVVAA IE   D +GI+WP D +APF ++++ +  H
Sbjct: 424 NATVQGEDGRPMVVTMGCYGIGVTRVVAAAIEQHFDERGIVWPTDEIAPFTVAVLPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  ++  E++Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQEYAEELYCTLQAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ E+++++   +  
Sbjct: 544 EYKNRRTGEKQMIAKEQLLDFLKGQIK 570


>gi|227543651|ref|ZP_03973700.1| threonine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300908708|ref|ZP_07126171.1| threonine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227186362|gb|EEI66433.1| threonine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300894115|gb|EFK87473.1| threonine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 627

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 166/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G   + 
Sbjct: 218 EAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGYQHVY 275

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG ++ Y  +M    D  D  M+   P +      +++ HI+SYR+LP
Sbjct: 276 TPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRDLP 335

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +T +  +  + K+    + ++   
Sbjct: 336 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDF 394

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + + + D M     S      D ++L+  
Sbjct: 395 DITDYSFRLSLR--------------DPKNVKKYYANDEMWEKSQSMLKSAMDDLNLD-- 438

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         ++ G DGK
Sbjct: 439 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LSYVGQDGK 490

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   ++   +  + 
Sbjct: 491 EHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTW---LAPEQVHIIPVN--EEAHGEYADN 545

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++      V  D   E++G +   A     P  ++VG    +++ V ++      + 
Sbjct: 546 LAKKMKAANIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQN 605

Query: 428 DMSLEEVINYASHRFSNN 445
           +MS E  +N      ++ 
Sbjct: 606 EMSQEAFMNEILEDIASY 623


>gi|170727590|ref|YP_001761616.1| prolyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|226701338|sp|B1KNR3|SYP_SHEWM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169812937|gb|ACA87521.1| prolyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 569

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDETYESMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YSNILTRLGLAFRPVIADTGSIGGSMSHEFHVLANSGEDLIAYS 224



 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 3/204 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
            D   L  I  +   P A   D+ N    ++ P  +   A  RGIEVGHIF  G  YS  
Sbjct: 364 QDNKHLFGINWERNLPQAEAFDLRNIIEGEASPCGQGTIALLRGIEVGHIFQLGKNYSEA 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+A     +GK   + MG YG+G  R+VAA IE +HD +GIIWPD++APF++ ++ +  H
Sbjct: 424 MNANVLDQNGKAQTLLMGCYGVGVSRMVAAAIEQNHDDRGIIWPDAIAPFRVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  E++Y  LS  G +V +DD  E+ G  FA  +L+G P  V++G + +     
Sbjct: 484 KSHRVQDMAEQLYKDLSDAGIEVLFDDRKERAGVMFADMELIGLPHVVVIGDRNIDAGVF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
           E K+R TG ++++  ++++ +   
Sbjct: 544 EYKNRRTGEKQEVPFDQIVEFLKS 567


>gi|170718445|ref|YP_001783662.1| prolyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083500|sp|B0UWK9|SYP_HAES2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168826574|gb|ACA31945.1| prolyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 571

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPNDAQVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ES R++ YG E+LR  DR ++  + GPTHEEV+TD+   
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESQRWEQYGPELLRFVDRGNRDFVLGPTHEEVITDLVHR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  +++Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKECLQNTYDVMYRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +  S +     
Sbjct: 181 YNNIFTRLGLDFRAVQADTGSIGGSASHEFQVLAKSGEDDIVFSSNSDYAA 231



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWDRDVALPKVADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKA- 356
            AT +G DG+   + MG YGIG  RVVAA IE  HD KGIIW  D +APF +++I +   
Sbjct: 424 KATVQGEDGRPQTMIMGCYGIGVSRVVAATIEQCHDEKGIIWSSDEIAPFTVAIIPMNMY 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L     DV +DD  E+ G  FA  +L+G P  +++G K +   ++
Sbjct: 484 KSKNVQIFAEELYQSLLNKNVDVIFDDRKERPGVMFADIELIGVPHMIVIGEKNLEKGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ E+V+++ + R +
Sbjct: 544 EYKNRRTGEKQIIAKEQVLDFLAQRVN 570


>gi|301310685|ref|ZP_07216624.1| threonine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300832259|gb|EFK62890.1| threonine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 649

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 152/453 (33%), Gaps = 47/453 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 226 KMLDEYLTLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+
Sbjct: 285 QARYNYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  +  +
Sbjct: 345 KNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKQEFLNV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F  +  ++   +                  D    + +   D           
Sbjct: 404 MDIISIVFKTMNFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIV 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +  +   L                   E    +    K        +G  +  GT    Y
Sbjct: 450 EACEEKGL---------------KAKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 494

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      + GAD + H  V +     G+M    AV+     GK  +W   + P ++ +
Sbjct: 495 NLPERFQLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPEQVCI 551

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   +I   L         DD  E+IG +    +L   P  +IVG K  
Sbjct: 552 MPI---SEKFNDYAWQIARELGNQEIRAIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEA 608

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +V ++ +  G +  M +       +     
Sbjct: 609 ENGEVSVRKQGEGDKGSMKIATFAALLNGEVEE 641


>gi|184154400|ref|YP_001842741.1| threonyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364219|ref|ZP_03848315.1| threonine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|325683422|ref|ZP_08162938.1| threonine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|183225744|dbj|BAG26261.1| threonyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070764|gb|EEI09091.1| threonine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|324977772|gb|EGC14723.1| threonine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 627

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 166/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G   + 
Sbjct: 218 EAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGYQHVY 275

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG ++ Y  +M    D  D  M+   P +      +++ HI+SYR+LP
Sbjct: 276 TPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRDLP 335

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +T +  +  + K+    + ++   
Sbjct: 336 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDF 394

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + + + D M     S      D ++L+  
Sbjct: 395 DITDYSFRLSLR--------------DPKNVKKYYANDEMWEKSQSMLKSAMDDLNLD-- 438

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         ++ G DGK
Sbjct: 439 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LSYVGQDGK 490

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   ++   +  + 
Sbjct: 491 EHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTW---LAPEQVHIIPVN--EEAHGEYADD 545

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++      V  D   E++G +   A     P  ++VG    +++ V ++      + 
Sbjct: 546 LAKKMKAANIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQN 605

Query: 428 DMSLEEVINYASHRFSNN 445
           +MS E  +N      ++ 
Sbjct: 606 EMSQEAFMNEILEDIASY 623


>gi|217972680|ref|YP_002357431.1| prolyl-tRNA synthetase [Shewanella baltica OS223]
 gi|254782915|sp|B8EDD0|SYP_SHEB2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217497815|gb|ACK46008.1| prolyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 571

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  ++++++  +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDFLKNAVK 570


>gi|157962683|ref|YP_001502717.1| prolyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083515|sp|A8H6J5|SYP_SHEPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157847683|gb|ABV88182.1| prolyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 570

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF +  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHIDQETMDETYEAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YSNILTRLGLAFRPVMADTGSIGGSMSHEFHVLANSGEDLIAYS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
            D      I  +   P A   D+ N    +  P  K   A  RGIEVGHIF  GT YS  
Sbjct: 364 QDGKHYFGINWERDLPEAPAFDLRNIIEGEPSPCGKGTIALLRGIEVGHIFQLGTNYSEA 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+A     +GK   + MG YG+G  R+VAA IE ++D +GIIWP+++APF + ++ +  H
Sbjct: 424 MNANVLDQNGKSQTLLMGCYGVGVSRMVAAAIEQNNDDRGIIWPEAIAPFTVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  E++Y  L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   
Sbjct: 484 KSHRVKDIAEQLYQDLNDAGIEVMFDDRKERPGVMFADMELIGIPHVVVIGDRNIDNGMF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           E K+R TG ++D+ L++++ +   +
Sbjct: 544 EYKNRRTGEKQDIPLDQIVEFLKAQ 568


>gi|167465772|ref|ZP_02330861.1| threonine-tRNA ligase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 419

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 162/442 (36%), Gaps = 35/442 (7%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD       L + +    +  +G+  WLP G      +   I + + + G 
Sbjct: 4   LHLLEEAKKRDHRKLGKDLKIFS-FSREVGQGLPLWLPNGATIRRTLERYIVDLEEKLGY 62

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + DL+  SG ++ Y ++M      +++ ++  P +      ++++ + SYR
Sbjct: 63  QHVYTPVLANVDLYKTSGHWEHYREDMFPPMQLDNEELVLRPMNCPHHMMVYKNELHSYR 122

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++     +++
Sbjct: 123 DLPIRIAELGTMHRYEMSGALTGLHRVRAMTLNDAHIF-CRPDQIKEEFARVITLIRQVY 181

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+     R                  D  +T  +   D M         +  +   L
Sbjct: 182 ADFGITDYRFRLSYR--------------DPQDTDKYFPNDEMWEMSQRMLKEVVE--EL 225

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                +     A      + ++  +L + + +S   ++    F    ++       + G 
Sbjct: 226 RLPYYEAEGEAAFYGPKLDVQIKTALKKEETLSTAQLD----FLLPERF----ELEYVGE 277

Query: 306 DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H   +   GI + M  + A +  +  G    W   + P +  ++ +        D 
Sbjct: 278 DGQKHRPVVIHRGIVSTMERMTAFLLENFAGALPTW---LCPVQAKILPV---SSAFNDY 331

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  RL + G  V  D   E++G +   + L   P  ++VG          ++ R  G
Sbjct: 332 AKEMEDRLKQAGIRVAADLRNEKLGYKIRESQLEKVPFMLVVGENEKQSGSFSVRRRGEG 391

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                S + +I          +
Sbjct: 392 DLGVHSADALIQMIREEIDTKK 413


>gi|153001389|ref|YP_001367070.1| prolyl-tRNA synthetase [Shewanella baltica OS185]
 gi|166980156|sp|A6WQB8|SYP_SHEB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151366007|gb|ABS09007.1| prolyl-tRNA synthetase [Shewanella baltica OS185]
          Length = 571

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPTAQVADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  ++++++  +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDFLKNAVK 570


>gi|254496505|ref|ZP_05109377.1| prolyl-tRNA synthase [Legionella drancourtii LLAP12]
 gi|254354272|gb|EET12935.1| prolyl-tRNA synthase [Legionella drancourtii LLAP12]
          Length = 577

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 123/225 (54%), Positives = 166/225 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LMLRTGMI +   G+Y+W+PLG K L  V  I+REE
Sbjct: 9   MRASQWFLATLKETPNDAEIVSHQLMLRTGMIRKLGSGLYTWMPLGLKVLRKVEHIVREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  ++E+ +P +Q A+LW E+GR++++G ++L + D N +   YGPTHEEV+TDI R+
Sbjct: 69  MNRINSVELLMPAVQPAELWQETGRWETFGGQLLTMKDSNGREYCYGPTHEEVITDIMRN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E  +++Y  M+ +
Sbjct: 129 ELQSYKQLPRCFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLNLESLQNTYKDMYQA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  +F S 
Sbjct: 189 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLADSGEDLIFYSD 233



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSAT 301
                            D+ N K  D  P+ K    S RGIEVGH+F  G KY+  M+A 
Sbjct: 374 HYQHAAWDKDVKEYQGYDLRNVKEGDISPDGKGTLHSCRGIEVGHVFQLGDKYAKAMNAA 433

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQV 360
                G+   + MG YG+G  RVVAA IE  HD +GIIWP ++APF++ +I +  H  Q 
Sbjct: 434 VINEQGQLETMMMGCYGLGITRVVAAAIEQHHDEQGIIWPSNIAPFQVVIIPLNGHKSQA 493

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +D  + +Y +    G DV  DD  E+ G+ FA  DL+G P +++V  + +  + VE K 
Sbjct: 494 VKDQADVLYKQFRNAGIDVLLDDRNERAGALFADHDLIGVPHRLVVSDRNLEQNCVEYKS 553

Query: 421 RLTGIREDM----SLEEVINYASH 440
           R TG  + +    ++ E+++  S 
Sbjct: 554 RATGETKSLDLNTAVAEIVSLVSQ 577


>gi|114767278|ref|ZP_01446118.1| threonyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114540584|gb|EAU43657.1| threonyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 649

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 152/442 (34%), Gaps = 48/442 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L    +   + G   W P G     ++   +R +Q+R G
Sbjct: 236 YLNFLEEAAKRDHRKLGREMDLF--HLQPEAPGQIFWHPNGWTIYTSLQDYMRRQQHRDG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRS 120
            +E++ P +    LW  SG +D+Y + M  +    + A         P +      IF S
Sbjct: 294 YVEVNTPQVVDRKLWEASGHWDNYQENMFIVEVDEEHAREKSINALKPMNCPCHVQIFNS 353

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    K   
Sbjct: 354 GLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF-CTDDQIEAETKKFIE 412

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+  LG  +  ++  + P     S E     +        +  +       E   +
Sbjct: 413 FLAGIYADLGFHNWTIKLSTRPEKRIGSEESWDRVEAALGDACKAAGYGFELQEGEGAFY 472

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              +                                    R  + G         +LP  
Sbjct: 473 GPKLEFTLTD---------------------------AIGREWQCGT---LQVDPNLPDR 502

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A++ G DG+ H  V +    +G+      ++   H GK   W   +AP ++ + +I +
Sbjct: 503 LDASYIGQDGEKHRPVMLHRAVLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASITS 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 560 ---EADDYVHEVVAELKAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            ++       +  +L E+    
Sbjct: 617 TVRRLGEKQTKVAALAEITQEL 638


>gi|296327515|ref|ZP_06870061.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155341|gb|EFG96112.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 637

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 167/447 (37%), Gaps = 50/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R K+ L +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R 
Sbjct: 226 RLKHHLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLIDLWRR 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  ++  P + + +LW  SG + +Y + M   ++ ++      P +       F+
Sbjct: 282 EHEKAGYQQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLAFK 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     + 
Sbjct: 341 HQLHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVV 399

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               + + +L      +   + P     S E   +A+                 P +   
Sbjct: 400 NLIDKFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAEAALAGALDKLGRKYKINPGDGAF 459

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               K    R  + G I      ++LP 
Sbjct: 460 YGPKLDFK---------------------------IKDAIGRMWQCGTI---QLDFNLPE 489

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ + 
Sbjct: 490 RFDVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTLN 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDS 414
                C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + 
Sbjct: 547 ---DECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENK 603

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
           +V I+   +  +   SL+E   Y    
Sbjct: 604 EVNIRRFGSKDQFSKSLDEFYTYVVDE 630


>gi|193211793|ref|YP_001997746.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085270|gb|ACF10546.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 661

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 156/449 (34%), Gaps = 49/449 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L   +  +   G+  WLP G    + +   ++ EQ + G + 
Sbjct: 249 RMEEARKRDHRKLGAELGLFM-LTPEVGSGLPIWLPNGAIIRNELETFLKAEQRKRGYVP 307

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRL---ADR--NDKAMIYGPTHEEVMTDIFRSHIK 123
           +  P + + +L+  SG Y  Y           D    ++  +  P +      I+   ++
Sbjct: 308 VYTPHIGNIELYKRSGHYPYYSDSQFPPLTYKDETGREEQYLLKPMNCPHHHLIYSQTLR 367

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G++R+R F   D++ +   P+              
Sbjct: 368 SYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIY-CRPDQLVDEICNAIDLTR 426

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F+ LG   +  R                L D      +     +      +  +  D 
Sbjct: 427 FVFNTLGFDDVETRLS--------------LHDPENQSKYGGTAEVWEQAEKDVKEAADR 472

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP-- 297
           + +   +    A +         +                 +G  +  GT    Y +P  
Sbjct: 473 MGIKYFIGIGEASFYGPKIDFIVRDA---------------IGRKWQLGTVQVDYVMPER 517

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++ G+DG+ H  V +     G+M     V+     G   +W   +AP +++++ I  
Sbjct: 518 FDLSYIGSDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLW---LAPVQVAVLPIA- 573

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D   ++YA+L   G     D   E+IG +   A++   P  +I+G       +V
Sbjct: 574 --EDVHDYAREVYAKLHAAGIRAELDLRSEKIGKKIREAEVSKIPAMLIIGRNEQEKGEV 631

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++    G      ++E+I          
Sbjct: 632 SLRRHRKGDEGSFGVDELIARLREEIDQR 660


>gi|53726087|ref|YP_104063.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|238561266|ref|ZP_00442346.2| proline--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|254202783|ref|ZP_04909146.1| prolyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254208125|ref|ZP_04914475.1| prolyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|81823924|sp|Q62GV8|SYP_BURMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52429510|gb|AAU50103.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|147747030|gb|EDK54107.1| prolyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147752019|gb|EDK59086.1| prolyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|238524974|gb|EEP88404.1| proline--tRNA ligase [Burkholderia mallei GB8 horse 4]
          Length = 578

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R+G +  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRIGFEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|258405882|ref|YP_003198624.1| prolyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257798109|gb|ACV69046.1| prolyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 579

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P +AE+ SHKL++R GMI + + GIY++LPLG +ALD +  ++REE
Sbjct: 1   MRLSNAYIPTLKEEPAEAEVVSHKLLVRAGMIRKVTSGIYTFLPLGLRALDKIAHVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G  E+ +P +Q  DLW E+GR++ YGKE+LRL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRAGCQEIFMPMVQPGDLWKETGRWEYYGKELLRLKDRHDRDYCLGPTHEEVVTSLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRCREFIMKDAYSFDRDEAGAQKSYQTMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R F RLGL+   + A+SG IGG +SHEF+VLA TGE  +          
Sbjct: 181 YTRAFQRLGLQFRAVEADSGAIGGSVSHEFMVLAATGEDTIASCAACEFAA 231



 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 263 HNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +    D  P    +    +GIEVGH+F  GTKYS PM A +   +GK+  + MG YGIG
Sbjct: 385 RDVTSGDPCPRCGGELRFPQGIEVGHVFNLGTKYSAPMQALYLDENGKEREMVMGCYGIG 444

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++AA IE +HD  GI++P S+AP++I+L+ +   ++  R   E  Y  L + G DV 
Sbjct: 445 VSRILAAAIEQNHDASGIMFPPSIAPYEIALLCLDTKNEEVRTKAEAFYETLQEQGVDVL 504

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +DD  E+ G +F  ADL+G PLQV+ G K V+   VE+K R TG + ++ L+ +  
Sbjct: 505 YDDRVERPGFKFKDADLMGLPLQVVFGGKGVARGIVEVKDRRTGEKAELPLDGLAE 560


>gi|190571398|ref|YP_001975756.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018797|ref|ZP_03334605.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|238055114|sp|B3CMJ4|SYT_WOLPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190357670|emb|CAQ55114.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995748|gb|EEB56388.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 633

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 163/448 (36%), Gaps = 44/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    +   +AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 221 RNKDELNTYLKRLEEAEKRDHRKIAKDMDLFHIQEEAVGQIFWHEQGYTLYNVLESYIRK 280

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 281 KLMNNGYFEVKTPILVSKELWEKSGHWDKFRENMFIIDESESKKLAIKPMNCPCHVQIFN 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           SHI+SYR+LP    +     R+E      G+MR R F   DA+ F +  + +  +  K  
Sbjct: 341 SHIRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEKQVNSETV-KFC 399

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG   I ++    P     + E    A+    +            P E   
Sbjct: 400 DLLKEVYSELGFNEISVKFSDRPDTRSGNDEVWDRAERALLEAVKEAGLSYELNPGEGAF 459

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               K    R  + G        + LP 
Sbjct: 460 YGPKLEF---------------------------ILKDAIGRNWQCGT---LQVDFILPE 489

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A + G DG K H V +    +G       ++  ++ GK  +W   +AP +++++ I 
Sbjct: 490 RLGAFYIGTDGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVW---LAPTQLAILTIT 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      +I   L + G  +  D   E+I  +  +      P+  I+G   V++  
Sbjct: 547 NESDG---YATEISNVLKEQGVRIKTDLTNEKISYKIRLHSSSKVPILWIIGKNEVTNKT 603

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V +++  +  +E  SLE          +
Sbjct: 604 VSVRNLGSEKQESFSLENATELLLKIIN 631


>gi|304409899|ref|ZP_07391518.1| prolyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302394|ref|ZP_07582152.1| prolyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304351308|gb|EFM15707.1| prolyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306914432|gb|EFN44853.1| prolyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 571

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DHKHYFGINWERDLPTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  ++++++  +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDFLKNAVK 570


>gi|257462679|ref|ZP_05627088.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 593

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 25  MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 85  MDRAGSQELLMPVLQPAELWRESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 145 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S       
Sbjct: 205 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYSDGCSYAA 255



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  SARGIE GHIF  G KYS  + A++    G+   + MG YGIG  R +AA IE ++D
Sbjct: 424 KLHSARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYGIGVGRTMAAAIEQNYD 483

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GIIWP ++AP+ + +I     +       E+IY  L+K   D   DD  E+ G +F  
Sbjct: 484 ENGIIWPTALAPYLVDVIPANIKNTEQMKLAEEIYENLNKEHLDAMIDDRDERPGFKFKD 543

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ADL+GFP ++I G K  +++ VE+K R TG   ++S +EVI      
Sbjct: 544 ADLIGFPFKIICGKK-AAENIVELKIRKTGETLEVSADEVIPTIKEL 589


>gi|116512847|ref|YP_811754.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactococcus
           lactis subsp. cremoris SK11]
 gi|122939966|sp|Q02WN1|SYT_LACLS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116108501|gb|ABJ73641.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 646

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 169/449 (37%), Gaps = 37/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L    +   +A+   H+ + R   +     +   G   WLP G      +   + 
Sbjct: 223 FSKEELEANLKLREEAKERDHRKLGRELDLFFNDAELGAGTAYWLPAGATIRRIIERFVV 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDI 117
           +++ + G   +  P + + + + +SG +  Y ++M    D  D + M   P +      I
Sbjct: 283 DQEVKNGYQHVITPVMMNLNTYKQSGHWQHYHEDMYPPMDMGDGEEMELRPMNCPSHIAI 342

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++ H+ SYR LP    +  +  R E      G+ R RE  + D ++F +  E  +  ++K
Sbjct: 343 YKHHVHSYRELPIRIAEFGMMHRYEKSGALSGLQRVREMTLNDGHTFVM-LEQVQEEFSK 401

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    + ++   G+     R                  D  +T  +   D M     +  
Sbjct: 402 ILQLIMDMYRDFGINDYSFRLSYR--------------DPKDTVKYFPDDEMWEKSQAML 447

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               D + L+ +        A      + ++  +L   + +S   ++  +          
Sbjct: 448 KATMDDMKLDYVEA--EGEAAFYGPKLDIQVKTALGNEETLSTIQLDFLNP--------E 497

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               ++ GADG+ H   M   G+ +      A +   + G    W   +AP + ++I + 
Sbjct: 498 NFDISYVGADGEKHRPVMIHRGVISTLERFIAYLIEVYKGAFPTW---LAPTQATIIPVN 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +++  D   KI   L   G  V  D+  E++G +   +     P Q+++G +  ++  
Sbjct: 555 --NEIHADYAWKIQRELQDKGFRVVVDEANEKMGWKIRQSQTHKIPYQIVIGDQEQANGT 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V I+   +   E +  E+ I   S   +N
Sbjct: 613 VNIRRYGSKETEVIPFEDFIEKISADVAN 641


>gi|237743345|ref|ZP_04573826.1| prolyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229433124|gb|EEO43336.1| prolyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 567

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N    +             +   + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNINYGRDYTADIVADIRKVKVGENCITGGKLHSARGIECGQIFKLGDKYSKAMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+    G+ HY+ MG YGIG  R +AA IE  +D  GIIWP S+AP+ + +I +   ++ 
Sbjct: 424 TYLDEKGQSHYMLMGCYGIGVTRTMAAAIEQYNDENGIIWPVSIAPYIVDVIPVNIKNEA 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIY  L +   DV  DD  E+ G +F  ADL+GFP +V+VG K   +  VE+K 
Sbjct: 484 QVNLAEKIYNNLQEEKIDVMLDDRDEKPGFKFKDADLIGFPFKVVVGKK-AEEGIVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++S  E+IN       
Sbjct: 543 RKTGETFEISQNEIINKIKELMK 565


>gi|296331396|ref|ZP_06873868.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305676383|ref|YP_003868055.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151511|gb|EFG92388.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414627|gb|ADM39746.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 638

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 155/441 (35%), Gaps = 42/441 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q + G 
Sbjct: 235 LHTLEEAAKRDHRKLGKQLELF--MFSEEAPGMPFYLPKGQIIRNELERFSRELQTKAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 EEVRTPFMMNQRLWEQSGHWDHYRDNMY-FSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F +  +  +    +       ++
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIF-VREDQIESEIKEAIRLIDEVY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P            ++     V    +        +          
Sbjct: 411 RTFGFEY-SVELSTRPEDSLGDDSLWEASERALAYVLEELNLSYEVNKGDG--------- 460

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                      A      +  + D+L  + + +   ++    F    K+      T+   
Sbjct: 461 -----------AFYGPKIDFHIKDALKRSHQCATIQLD----FQMPEKF----DLTYINE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +     G++     ++     G   +W   +AP ++ +I +     V  D 
Sbjct: 502 HNEKVRPVVIHRAVFGSIDRFFGILIEHFGGAFPVW---LAPIQVQIIPV---SHVHWDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C K+ A L ++G     D+  E++G +   + +   P  +++G        V ++     
Sbjct: 556 CRKVQAELKRLGIRARIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQKDAVNVRQFGDQ 615

Query: 425 IREDMSLEEVINYASHRFSNN 445
           + E +  +   +    +  N 
Sbjct: 616 LIEHVPFQTFKDKLVKQVKNR 636


>gi|319426918|gb|ADV54992.1| prolyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 571

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNEAYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +  S
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAYS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +  H 
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R TG ++D+  ++++++  +   +
Sbjct: 545 YKNRRTGEKQDIPFDQLVDFLKNAVKS 571


>gi|32035109|ref|ZP_00135161.1| COG0442: Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209292|ref|YP_001054517.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|166980093|sp|A3N3C6|SYP_ACTP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126098084|gb|ABN74912.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 571

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|167825898|ref|ZP_02457369.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|226196858|ref|ZP_03792437.1| proline--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|254299336|ref|ZP_04966786.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157809003|gb|EDO86173.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|225931118|gb|EEH27126.1| proline--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
          Length = 578

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|163735041|ref|ZP_02142478.1| threonyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161391823|gb|EDQ16155.1| threonyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 648

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 145/445 (32%), Gaps = 51/445 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 KAHLTMLEE----AAKRDHRKLGREMDLFHMQEEAPGQVFWHPNGWSIYTTLQDYMRRKQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G  E++ P +    LW  SG +D Y + M  +    + A         P +      
Sbjct: 290 RAAGYQEVNTPQVVDRKLWEASGHWDKYQEHMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F    E    +  
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCR--EDQIEAEC 407

Query: 176 KMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             F++YL  ++  LG +   +   + P     S E     +        +          
Sbjct: 408 AAFITYLSSVYQDLGFEKFEIMFATRPEKRVGSEESWDHVEAALENAIKATGHPYTLDAG 467

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           E   +   +                                    R  + G  F      
Sbjct: 468 EGAFYGPKLDFKLTD---------------------------AIGREWQCGT-FQVDPNL 499

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
              + ATF G DG K     +    +G+      ++  +  GK   W   +AP ++ + +
Sbjct: 500 PERLDATFIGEDGAKHRPYMLHRACLGSFERFIGILIENSAGKLPFW---LAPRQVVVAS 556

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D   ++  +L   G     D   E+I  +     +   P+ + VG++ V +
Sbjct: 557 IITD---ANDYVMQVVDQLKAAGVRAEADLRNEKINYKVREHSVGKVPVILAVGAREVEE 613

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
             V ++          SLE V    
Sbjct: 614 QTVTLRRLGEKKTTVESLEAVTQAL 638


>gi|238026159|ref|YP_002910390.1| prolyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237875353|gb|ACR27686.1| Prolyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 578

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRIAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDQAGLKESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+R+F R+GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRVFTRIGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADLRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  + ATF    GK   ++MG YGIG  R++ A IE + D +GIIWP+
Sbjct: 412 EVGHVFQLGTKYSKALGATFLDEGGKPQPMEMGCYGIGVTRILGAAIEQNFDDRGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +     ++ R+  +++YA LS  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSELVRETADQLYAALSAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D K+E + R       +  +           
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDTEATLLPADGAAATVIETVR 573


>gi|194290784|ref|YP_002006691.1| prolyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|226699135|sp|B3R894|SYP_CUPTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193224619|emb|CAQ70630.1| prolyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 573

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPIGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G + SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDTDGLRKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R GL+   + A++G IGG  SHEF V+A+TGE  +   
Sbjct: 181 YVRIFRRFGLEFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYC 224



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF   +   D+        +      P    +D+ N    D+ P+ +      RGI
Sbjct: 355 ANMSDFVCGANYRDYH----YTGVNWGRDLPEPIVADLRNVVAGDASPDGQGTLEICRGI 410

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GT+YS  M+ATF   +GK   +QMG YGIG  R++ A IE + D +GIIWP 
Sbjct: 411 EVGHVFMLGTRYSESMNATFLDENGKTQPMQMGCYGIGITRILGAAIEQNFDERGIIWPA 470

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF + +  +     +  +   ++I+A L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 471 AIAPFAVVICPVGYDRSEAVKAEADRIHAELLAAGVDVILDDRGERPGVMFADWELIGVP 530

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V+VG + + + KVE + R       +S+ EV+ +     +N
Sbjct: 531 HRVVVGDRGLKEGKVEYQGRRDAQATAVSVAEVVGHVRSLLAN 573


>gi|71279026|ref|YP_269920.1| prolyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|114152184|sp|Q47Z50|SYP_COLP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71144766|gb|AAZ25239.1| prolyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 569

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 154/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P +AE+ SH+LMLR G++   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPANAEVISHQLMLRAGLVRNLASGLYTWLPTGLRVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ +P +Q ADLW ESGR D YG E+LR+ DR+ +  + GPTHEEV+T +  +
Sbjct: 61  MQRAGGNEILMPMVQPADLWQESGRLDDYGPELLRINDRHKRPFVLGPTHEEVVTKLVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMR REFLMKDAYSF L  E  + +Y  MF +
Sbjct: 121 ELSSYKQLPLNVFQIQSKFRDEIRPRFGVMRGREFLMKDAYSFHLEDECLEKTYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RL L   P+ A++G IGG+ SHEF VLAD+GE  +  S 
Sbjct: 181 YCRIFERLELNFRPVLADTGSIGGEKSHEFHVLADSGEDDIAFSD 225



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/202 (33%), Positives = 112/202 (55%), Gaps = 3/202 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           D   L  +  Q      +  D+ N    D  P  +      RGIEVGHIF  G KY+  M
Sbjct: 368 DDAHLTGVNWQRDCNEISVHDIRNVVAGDPSPCGQGNIEIKRGIEVGHIFQLGRKYAEAM 427

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +       GK+  + MG YGIG  R+VAA IE +HD  GI WP ++APF+++++ +    
Sbjct: 428 NCAVLNEGGKNQTLTMGCYGIGVSRIVAAAIEQNHDKYGIKWPKAIAPFQVAIVPMNMAK 487

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E +Y  L++ G +V +DD  E+ G  FA  +L+G PL +I+G + +   ++E
Sbjct: 488 SARVKETAEALYESLNQAGIEVLFDDRKERPGVMFADHELMGTPLLLIIGERNLDAQQIE 547

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           +K+R+TG +  ++++EV++  +
Sbjct: 548 LKNRITGEKSLIAIDEVMSLFN 569


>gi|294782476|ref|ZP_06747802.1| threonine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294481117|gb|EFG28892.1| threonine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 637

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 167/445 (37%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    I ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKFMEEAEKRDHRKLGKELELF--FISEYGPGFPFFLPKGMVFRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E   +A++                P +   + 
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGDGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      ++LP   
Sbjct: 462 PKLDFK---------------------------IKDAIGRMWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ +   
Sbjct: 492 DVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTLN-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKV 416
              C    ++I A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V
Sbjct: 547 -DECIPYAKEIMAKLQELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEVENKEV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +   SL++   Y    
Sbjct: 606 NIRRFGSKDQFPKSLDDFYEYVVDE 630


>gi|261855252|ref|YP_003262535.1| prolyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261835721|gb|ACX95488.1| prolyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 568

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 161/240 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P +AEI SH+LMLR GMI + + G+Y+W PLG + L  V A++REE
Sbjct: 1   MRSSQFPLNTLKETPTEAEIISHQLMLRAGMIRRLASGLYTWSPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV++D  R 
Sbjct: 61  MEGIGALELLMPAIQPAELWQESGRWQKYGPELLRVKDRHDREFCVGPTHEEVISDYARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  +YQ+Q KFRDE+RPRFGVMR+REF+MKDAYSF    E  + +Y  M+ +
Sbjct: 121 ELKSYRQLPICYYQVQTKFRDEIRPRFGVMRAREFIMKDAYSFHADVESLRVTYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +  + +            F 
Sbjct: 181 YTRIFTRLGLKFRAVEADTGSIGGKGSHEFHVLADSGEDAIAYAVNGDYAANVEMAPTFP 240



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D   +  +      P   T+D+ N    D  P  ++K   ARGIEVGH+F  GT YS  M
Sbjct: 363 DGWHITGVNWGRDLPEPETADLRNAVEGDPAPDGQDKLAIARGIEVGHVFQLGTTYSEKM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F    GK     MG YGIG  R+VAA IE +HD  GI+WP  +APF+++++ I  H 
Sbjct: 423 HCEFLDEHGKPATAIMGCYGIGVSRIVAAAIEQNHDDNGIVWPVPLAPFEVAIVPINGHR 482

Query: 359 QVCRDA-CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                A  E++ A L+  G +V  DD G + G  FA  +L+G PL+++V  + ++  + E
Sbjct: 483 APAVQAEAERLEAELTAQGFNVLLDDRGLRPGVAFADMELIGIPLRIVVSERGLAAGEYE 542

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            + R     + +  ++++ +      
Sbjct: 543 TRLRWESENKSIIADQLLAWIGQNLK 568


>gi|15673893|ref|NP_268068.1| theronyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281492524|ref|YP_003354504.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|22654138|sp|Q9CED2|SYT_LACLA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12724948|gb|AAK06009.1|AE006421_2 theronyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281376188|gb|ADA65679.1| Threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|326407464|gb|ADZ64535.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 646

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 172/444 (38%), Gaps = 40/444 (9%)

Query: 11  LQENPR---DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L+EN +   +A+   H+ + R   +     +   G   WLP G      +   + +++ +
Sbjct: 228 LEENLKLREEAKERDHRKLGRELDLFFNDAELGAGTAYWLPAGATIRRIIERFVVDQEVK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
            G   +  P + + + + +SG +  Y ++M    D  D + M   P +      I++ H+
Sbjct: 288 NGYQHVITPVMMNLNTYKQSGHWQHYHEDMYPPMDMGDGEEMELRPMNCPSHIAIYKHHV 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +  +  R E      G+ R RE  + D ++F +  E  +  ++K+    
Sbjct: 348 HSYRELPIRIAEFGMMHRYEKSGALSGLQRVREMTLNDGHTFVM-LEQVQEEFSKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++   G+     R                  D  +T  +   D M     +      D
Sbjct: 407 MDMYRDFGINDYSFRLSYR--------------DPKDTVKYFPDDEMWEKSQAMLKATMD 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            ++L+ +        A      + ++  +L   + +S   ++  +              +
Sbjct: 453 DMNLDYVEA--EGEAAFYGPKLDIQVKTALGNEETLSTIQLDFLNP--------ENFDIS 502

Query: 302 FKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG+ H   M   G+ +      A +   + G    W   +AP + ++I +   +++
Sbjct: 503 YIGADGEKHRPVMIHRGVISTLERFIAYLIEVYKGAFPTW---LAPTQATIIPVN--NEI 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   KI   L   G  V  D+  E++G +   +     P Q+++G +  +D  V I+ 
Sbjct: 558 HADYAWKIQRELQDKGFRVVVDEANEKMGWKIRQSQTHKIPYQIVIGDQEQADGTVNIRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             +   + + LEE I   S   +N
Sbjct: 618 YGSKETKVIPLEEFIENISADVAN 641


>gi|325528042|gb|EGD05262.1| prolyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 578

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 167/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLNESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADVRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGIGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +        R+A +K+YA LS  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDAVREAADKLYAELSAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +V++G + + + K+E + R       +  + V    + +  
Sbjct: 532 HRVVIGERGLKEGKIEYQGRRDAEATLLPADAVAATVAEKIR 573


>gi|256028463|ref|ZP_05442297.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289766384|ref|ZP_06525762.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289717939|gb|EFD81951.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 567

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N    +             +   + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNINYGRDYTADIVADIRKVKVGENCITGGKLHSARGIECGQIFKLGDKYSKAMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+    G+ HY+ MG YGIG  R +AA IE  +D  GIIWP S+AP+ + +I +   ++ 
Sbjct: 424 TYLDEKGQSHYMLMGCYGIGVTRTMAAAIEQYNDENGIIWPVSIAPYIVDVIPVNIKNEA 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIY  L +   DV  DD  E+ G +F  ADL+GFP +V+VG K   +  VE+K 
Sbjct: 484 QVNLAEKIYNNLQEEKIDVMLDDRDEKPGFKFKDADLIGFPFKVVVGKK-AEEGIVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++S  E+IN       
Sbjct: 543 RKTGETFEISQNEIINKIKELMK 565


>gi|119504253|ref|ZP_01626333.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119459761|gb|EAW40856.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 569

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G+I + + GIY+W+PLG + +  V  ++REE
Sbjct: 1   MRASQFLLSTLKETPADAEIISHQLMLRAGLIRRVAAGIYNWMPLGLRVIRRVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+S+P +Q A+LW+ESGR++ YG E+ RL DR+++    GPTHEE++T + RS
Sbjct: 61  MCRAGALEISMPVVQPAELWLESGRWEQYGPELARLQDRHNRDFCLGPTHEEIITALGRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y +M  +
Sbjct: 121 EIKSYKQLPLNFFQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHADQVSLEQTYWRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL    + A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YTAIFTRLGLNFRSVEADTGSIGGSHSHEFHVLADSGEDAIAFSD 225



 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 1/166 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +      RGIEVGHIF  GTKYS  M A     +GK   + MG YGIG  R+VAA I
Sbjct: 393 PCGQGALEIRRGIEVGHIFQLGTKYSEAMKAVVLNDEGKSVPMAMGCYGIGVTRIVAAAI 452

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E +HD +GIIWPD++APF+++L+ +     +    A E +Y +L  +G +VF DD  E+ 
Sbjct: 453 EQNHDDQGIIWPDAMAPFEVALVPLNMDKSEAVATATEALYEQLLTMGVEVFMDDRKERP 512

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +FA  +L+G P++V +G + +++  +E++ R +  ++ + + E 
Sbjct: 513 GVKFAQMELIGIPVRVTLGDRSLAEGNIELQERTSDQKQLIPVSEA 558


>gi|53720607|ref|YP_109593.1| prolyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76808687|ref|YP_334889.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121599492|ref|YP_991789.1| prolyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124386640|ref|YP_001027282.1| prolyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126449387|ref|YP_001082781.1| prolyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126455301|ref|YP_001067757.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134280246|ref|ZP_01766957.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|167920563|ref|ZP_02507654.1| prolyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217421246|ref|ZP_03452751.1| proline--tRNA ligase [Burkholderia pseudomallei 576]
 gi|242316379|ref|ZP_04815395.1| proline--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|251766621|ref|ZP_02264460.2| proline--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254178869|ref|ZP_04885523.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254180577|ref|ZP_04887175.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254190985|ref|ZP_04897491.1| prolyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254199071|ref|ZP_04905486.1| prolyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254258028|ref|ZP_04949082.1| proline--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|81824656|sp|Q63QM5|SYP_BURPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152176|sp|Q3JNG4|SYP_BURP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980105|sp|A3MR95|SYP_BURM7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980106|sp|A2S5R3|SYP_BURM9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980107|sp|A1V0N6|SYP_BURMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980108|sp|A3NZI6|SYP_BURP0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52211021|emb|CAH37009.1| prolyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76578140|gb|ABA47615.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121228302|gb|ABM50820.1| prolyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124294660|gb|ABN03929.1| proline--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126228943|gb|ABN92483.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242257|gb|ABO05350.1| proline--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134248253|gb|EBA48336.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|157938659|gb|EDO94329.1| prolyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160694783|gb|EDP84791.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169656901|gb|EDS88298.1| prolyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184211116|gb|EDU08159.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217396658|gb|EEC36675.1| proline--tRNA ligase [Burkholderia pseudomallei 576]
 gi|242139618|gb|EES26020.1| proline--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243065285|gb|EES47471.1| proline--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254216717|gb|EET06101.1| proline--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 578

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|163737374|ref|ZP_02144791.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161388900|gb|EDQ13252.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 648

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 150/447 (33%), Gaps = 53/447 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G K    +   +R  Q
Sbjct: 234 KAHLHMLEE----AAKRDHRKLGREMNLFHMQEEAPGQIFWHPNGWKIYTTLQDYMRRMQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
           +R G +E++ P +    LW  SG +D Y + M  +    D A         P +      
Sbjct: 290 DRDGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 VFNQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIESETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K      +++  LG     ++  + P     S E   L +        +  +    +  E
Sbjct: 409 KFIAFLSKVYADLGFHDWTIKLSTRPEKRIGSDESWDLVEKALGDACKAAGYEYELLEGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G         +
Sbjct: 469 GAFYGPKLEFTLTD---------------------------AIGRNWQCGT---LQVDPN 498

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + A F G DG K     +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 499 LPERLDANFIGQDGSKHRPFMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 555

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++   L   G     D   E+I  +     +   P+ + VG + V 
Sbjct: 556 SITSD---ADDYVNEVVETLRAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVE 612

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  V ++       +  +L+ V    +
Sbjct: 613 ERTVSVRRLGEKQTKVEALDAVTKALA 639


>gi|237813889|ref|YP_002898340.1| proline--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|237505775|gb|ACQ98093.1| proline--tRNA ligase [Burkholderia pseudomallei MSHR346]
          Length = 578

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|82523876|emb|CAI78599.1| threonyl-tRNA synthetase [uncultured delta proteobacterium]
          Length = 631

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 160/440 (36%), Gaps = 44/440 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++   + +   RD      +L L + +  +   G+  W P G      +     +E  + 
Sbjct: 226 EHLNHLEEVKKRDHRKLGKELDLFS-LSEEVGAGMILWHPKGAMFRYLLEDFEIKEHLKR 284

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  ++  P L  ++LW +SG +D Y + M   ++ ++++    P +      I++SHI S
Sbjct: 285 GYQKVIGPQLLRSELWKKSGHFDHYRENMY-FSEIDNQSYGIKPMNCLAHMLIYKSHIHS 343

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  ++++    R E      G++R REF   DA+    TPE   +    +      
Sbjct: 344 YRDLPIRYFELGTVHRHEKSGVLHGLLRVREFTQDDAHIL-CTPEQLDNEIKSILDFIKY 402

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G K   +   + P     S E    A                    +   +   I
Sbjct: 403 VMGIFGFKY-EVEISTRPEHSIGSDEDWERATNALKSALEESGTGYDLNEGDGAFYGPKI 461

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
                                          K    R  +   I      ++LP     +
Sbjct: 462 DFKL---------------------------KDALDRKWQCATI---QCDFTLPERFELS 491

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG K   V +    +GA+     ++   + G   +W   ++P +  ++ +      
Sbjct: 492 YVGQDGVKYRPVMLHRVILGAIERFVGILIEHYAGAFPVW---LSPVQAVILTVT---DR 545

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + +Y  L      V  D   E++G +   A L   P  +I+G K VS+ +V ++ 
Sbjct: 546 VDEYAQNLYQELIDADIRVEMDIRNEKLGLKVREAQLQKIPYMLIIGDKEVSEKRVTLRC 605

Query: 421 RLTGIREDMSLEEVINYASH 440
           R    + ++++E+ I     
Sbjct: 606 RDDKKQSELNIEDFIGLVKK 625


>gi|195443008|ref|XP_002069231.1| GK21088 [Drosophila willistoni]
 gi|194165316|gb|EDW80217.1| GK21088 [Drosophila willistoni]
          Length = 699

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 163/444 (36%), Gaps = 47/444 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   ++ E  + 
Sbjct: 286 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMNFMKAEYRKR 345

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M       +K     P +      IF +  +S
Sbjct: 346 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEVEKEK-FALKPMNCPGHCLIFDNRNRS 404

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F  TP+  K            
Sbjct: 405 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTPDQIKSEMKGCLDFLHH 463

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +++  G     +   + P       E    A+    +            P +        
Sbjct: 464 VYNIFGFSFQLV-LSTRPEKYLGELEQWNDAEKALAESLDEFGIPWKENPGDG------- 515

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L     + 
Sbjct: 516 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----NYI 554

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +        
Sbjct: 555 ADDGEKKRPVIIHRAILGSVERMIAILTENYAGK---WPFWLSPRQVMVVPVGP---AYD 608

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 609 EYAQSVREQLHAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 668

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  ++S+ E+I+    +  N 
Sbjct: 669 DNKVHGEVSVAELISKL-QKIRNE 691


>gi|254253311|ref|ZP_04946629.1| Prolyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895920|gb|EAY69800.1| Prolyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 578

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLDESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPDVADVRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGITRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +        R+A +K+YA L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDAVREAADKLYAELVAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            +V++G + + + K+E + R       + 
Sbjct: 532 HRVVIGERGLKEGKIEYQGRRDTEATLLP 560


>gi|260494526|ref|ZP_05814656.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260197688|gb|EEW95205.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 637

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 165/433 (38%), Gaps = 46/433 (10%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    + ++  G   +LP G    + +  + R+E  + G +++  P 
Sbjct: 236 EAEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLVDLWRKEHEKAGYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y + M   ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNYRENMYT-SEIDEVEFAIKPMNCPGGVLAFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TP+  +     +     + + +L    
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNLIDKFYSKLFGFE 413

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P     S E   +A++                P +   +   +         
Sbjct: 414 YEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGDGAFYGPKLDFK------ 467

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH 310
                                 K    R  + G I      ++LP     T+ G DG+ H
Sbjct: 468 ---------------------IKDAIGRMWQCGTI---QLDFNLPERFDVTYIGEDGEKH 503

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++     ++   + G   +W   +AP ++ ++ I      C    ++I 
Sbjct: 504 RPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVMTIN---DECVPYAKEIM 557

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I+   +  +  
Sbjct: 558 AKLDELGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNIRRFGSKDQFS 617

Query: 429 MSLEEVINYASHR 441
            SL+E  NY    
Sbjct: 618 KSLDEFYNYVVDE 630


>gi|89071308|ref|ZP_01158467.1| threonyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89043173|gb|EAR49409.1| threonyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 654

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 140/447 (31%), Gaps = 49/447 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L  L+E    A+   H+ + R      +   + G   W P G      +   +R +Q
Sbjct: 238 KAHLHRLEE----AQKRDHRKLGREMDLFHMQAEAPGQVFWHPNGWTVYTTLQDYMRRKQ 293

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-----IYGPTHEEVMTD 116
              G  E++ P +    LW  SG +D Y   M  +    + A         P +      
Sbjct: 294 RAGGYREINTPQVVDRKLWEASGHWDKYQDHMFIVEVDEEHAQEKAINALKPMNCPCHVQ 353

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    
Sbjct: 354 VFNQGLKSYRDLPLRLAEFGSCSRYEPSGALHGIMRVRGFTQDDAHIF-CTEDQIEAECA 412

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       I+  LG  +  ++  + P     S       +        +        P +
Sbjct: 413 RFINFLAGIYEDLGFPTFEIKFATRPEKRVGSDASWDHVENALESAIRATGRTYTLEPGD 472

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G  F       
Sbjct: 473 GAFYGPKLDFYLTD---------------------------AIGRTWQCGT-FQVDPNLP 504

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+ G DG K     +    +G+      ++   H GK   W   +AP ++ + +I
Sbjct: 505 ERLGATYIGEDGAKHRPYMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASI 561

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +          ++   L   G     D   E+I  +     +   P+ +  G + V + 
Sbjct: 562 VSD---ADGYVHEVVDALQAAGVRAEADTRNEKINFKVREHSVGKVPVILACGGREVEER 618

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++           L+ ++   S  
Sbjct: 619 TVSVRRLGDKATRTAGLDALVGELSAE 645


>gi|307257929|ref|ZP_07539683.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306863576|gb|EFM95505.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 571

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|322796311|gb|EFZ18882.1| hypothetical protein SINV_16250 [Solenopsis invicta]
          Length = 807

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 153/429 (35%), Gaps = 42/429 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             RD      +  L     H+ S G   + P G    + +   IR E  + G  E+  P 
Sbjct: 405 AKRDHRKIGKEQELY--FFHELSPGSCFFQPRGAYIYNTLMEFIRSEYRKRGFQEVITPN 462

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + ++ LW  SG +  Y + M    D   +     P +      IF    +S+R LP    
Sbjct: 463 IYNSKLWQTSGHWQHYAENMFSF-DVEKETFALKPMNCPGHCLIFDVRCRSWRELPLRLA 521

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+EL     G+ R R F   DA+ F  + E  K   +        ++  LG   
Sbjct: 522 DFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CSIEQIKDEISGALDFLWHVYSVLGFTF 580

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P       E    A+    +   +        P +                 
Sbjct: 581 -NLCLSTRPEKFMGDIEVWNEAEKALEESLNAFGQPWSLNPEDG---------------- 623

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHY 311
               A      +  + D+L    + +   ++    F    +++L    ++    G K   
Sbjct: 624 ----AFYGPKIDITIMDALKRAHQTATIQLD----FQLPIRFNL----SYVNEAGEKTRP 671

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++  S+ GK   WP  ++P +  ++ + +      D   ++  +
Sbjct: 672 VIIHRAILGSVERMIAIVTESYGGK---WPYWLSPRQAMVVPVASQ---FDDYAYEVKQK 725

Query: 372 LSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L   G  V  D D  + +  +   A L  F   ++VG K  +   V ++ R   +  +++
Sbjct: 726 LWDAGVMVEVDTDSSDTLNKKIRNAQLAQFNFILVVGEKERNAGTVNVRTRDNTVHGEIA 785

Query: 431 LEEVINYAS 439
           ++E+I    
Sbjct: 786 VDELIVKLK 794


>gi|126440120|ref|YP_001060493.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|166980109|sp|A3NDS2|SYP_BURP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126219613|gb|ABN83119.1| proline--tRNA ligase [Burkholderia pseudomallei 668]
          Length = 578

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 AIAPFEVVLCPMGYDRSDAVREAADKLYAELAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|189466356|ref|ZP_03015141.1| hypothetical protein BACINT_02731 [Bacteroides intestinalis DSM
           17393]
 gi|189434620|gb|EDV03605.1| hypothetical protein BACINT_02731 [Bacteroides intestinalis DSM
           17393]
          Length = 646

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 156/458 (34%), Gaps = 60/458 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q 
Sbjct: 228 LDEYLVVLEEAKKRDHRKIGREMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRIQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVITPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +F  +   ++  +            IG D + E    A                  
Sbjct: 406 IISIVFRSMEFANVEAQISLRDKVNREKYIGSDENWERAEQA------------------ 447

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                A          E    +    K        +G  +  GT
Sbjct: 448 ------------------IIEACEEKGLTARIEYGEAAFYGPKLDFMVKDAIGRRWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      + GAD + H  V +     G+M    AV+     GK  +W   + P
Sbjct: 490 IQVDYNLPERFDLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++++ I    +   D  +++   L +       D+  E+IG +    +L   P  +IV
Sbjct: 547 EQVAILPI---SEKFNDYAQEVKKFLKQYDIRAIVDERNEKIGRKIRDNELKRIPYMLIV 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G K   + +V ++ +  G +  M  EE     +    N
Sbjct: 604 GEKEAENREVSVRKQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|307262323|ref|ZP_07543971.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306867986|gb|EFM99814.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 571

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|330839271|ref|YP_004413851.1| Prolyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329747035|gb|AEC00392.1| Prolyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 568

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DAEI SH+LMLR GMI + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MLTSKLYAPTLREVPSDAEITSHRLMLRAGMIRKAAGGVYTYLPLAWRTIKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ESGR+  +G+EM RL D + +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQELCMPIMQPAEIWQESGRWSVFGQEMFRLKDCHGREFCLGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE+RPRFG+MRSREF+MKD YSFD    G+  SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIQNKYRDEIRPRFGLMRSREFIMKDLYSFDKDEAGADISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F R GLK  P+ A++G IGG+ +HEF VLA  GE+++ C        
Sbjct: 181 YTNVFTRCGLKFRPVEADAGAIGGNHTHEFTVLAAAGESEIACCTACDYAA 231



 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 2/179 (1%)

Query: 268 FDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            D  P         RGIE G +F  GTKYS  + ATF   +GK+  + MG YGIG  R +
Sbjct: 389 GDPCPHCGAPVEITRGIEAGQVFKLGTKYSEALGATFLDENGKEKALFMGCYGIGVGRTM 448

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA IE  +D  GIIWP ++AP+++ ++ + A         E++Y  L   G D   DD  
Sbjct: 449 AAAIEQHNDEHGIIWPRAIAPYEVVVVPVNAKASEQLALAEEVYEMLLAAGVDAILDDRK 508

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G +F  ADL+G+PL++ +G K + + K+E+K R +G   D +  E +        +
Sbjct: 509 DRAGVKFKDADLIGYPLRITIGPKALEEGKIELKVRRSGESCDCTKAECLAKVQELLKD 567


>gi|329961279|ref|ZP_08299445.1| threonine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328531944|gb|EGF58761.1| threonine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 646

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 157/452 (34%), Gaps = 48/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q+
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQS 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               +F  +  ++   +      +  D         +  E  +  + +            
Sbjct: 406 IISIVFQSMAFENFEAQISLRDKVNRDKYIGSDENWEKAEQAIIEACEEKGLKAK----- 460

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
                                     E    +    K        +G  +  GT    Y+
Sbjct: 461 -------------------------VEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYN 495

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + GAD + H  V +     G+M    AV+     GK  +W   + P +++++
Sbjct: 496 LPERFQLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQVAIL 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +   D   ++   L +       D+  E+IG +    ++   P  ++VG K   
Sbjct: 553 PI---SEKFNDYALEVKQLLKQYDIRALVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAE 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + ++ ++ +  G +  M +EE     S    N
Sbjct: 610 NKEIAVRKQGEGDQGTMKIEEFAKKVSEEVRN 641


>gi|190151185|ref|YP_001969710.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307264534|ref|ZP_07546118.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|226731421|sp|B3GZ82|SYP_ACTP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189916316|gb|ACE62568.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306870133|gb|EFN01893.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 571

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGRHYFNVNWERDVAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGDDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|258404181|ref|YP_003196923.1| threonyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796408|gb|ACV67345.1| threonyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 649

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 160/439 (36%), Gaps = 41/439 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      +L L +    +   G+  W P G      +    R+E  R
Sbjct: 228 KNYLQQLEEAKKRDHRKLGAQLDLFS-FSEEAGPGMPLWHPKGALIRTILEDFSRKEHLR 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  PTL   +LW  SG YD+Y + M    + +D+A    P +      I+ + I+
Sbjct: 287 RGYQLVQGPTLLRQELWQRSGHYDNYRENMY-FTEIDDQAYGIKPMNCLAHMLIYNTKIR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  ++++    R E      G++R R+F   DA+     P+  +   +K+     
Sbjct: 346 SYRDLPIRYFELGTVHRHEKSGVLHGLLRVRQFTQDDAHIL-CRPDQLQDEISKIVRFVQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G     +   + P     S +    A    T+                      
Sbjct: 405 DVLGLFGFDY-EVEISTRPEKSIGSDDAWDRATDALTKALDEL----------------- 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + KL D+L    + +    +    F    ++       +
Sbjct: 447 ---GVEYGICAGDGAFYGPKIDMKLKDALGRKWQCTTIQCD----FTLPERF----DLVY 495

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H  V +    +GA+     V+   + G    W   + P +  ++NI       
Sbjct: 496 VGQDGQRHRPVMLHRAMLGAIERFLGVLLEHYAGALPTW---LMPEQARVLNITDD---H 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  ++   +L   G     D   E++G +   A +   P  ++VG + V+ S   ++ R
Sbjct: 550 AEYAQQCVDQLRAAGIRAEADLRNEKLGYKVREAQMEKIPYVLVVGEQEVATSGANLRLR 609

Query: 422 LTGIREDMSLEEVINYASH 440
                  + ++++I+   H
Sbjct: 610 GGKNIGVLPVDDIIDRIRH 628


>gi|125624939|ref|YP_001033422.1| ThrS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|166223350|sp|A2RN48|SYT_LACLM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124493747|emb|CAL98736.1| ThrS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071738|gb|ADJ61138.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 646

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 169/449 (37%), Gaps = 37/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L    +   +A+   H+ + R   +     +   G   WLP G      +   + 
Sbjct: 223 FSKEELEANLKLREEAKERDHRKLGRELDLFFNDAELGAGTAYWLPAGATIRRIIERFVV 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDI 117
           +++ + G   +  P + + + + +SG +  Y ++M    D  D + M   P +      I
Sbjct: 283 DQEVKNGYQHVITPVMMNLNTYKQSGHWQHYHEDMYPPMDMGDGEEMELRPMNCPSHIAI 342

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++ H+ SYR LP    +  +  R E      G+ R RE  + D ++F +  E  +  ++K
Sbjct: 343 YKHHVHSYRELPIRIAEFGMMHRYEKSGALSGLQRVREMTLNDGHTFVM-LEQVQEEFSK 401

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    + ++   G+     R                  D  +T  +   D M     +  
Sbjct: 402 ILQLIMDMYRDFGINDYSFRLSYR--------------DPKDTVKYFPDDEMWEKSQAML 447

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               D + L+ +        A      + ++  +L   + +S   ++  +          
Sbjct: 448 KATMDDMKLDYVEA--EGEAAFYGPKLDIQVKTALGNEETLSTIQLDFLNP--------E 497

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               ++ GADG+ H   M   G+ +      A +   + G    W   +AP + ++I + 
Sbjct: 498 NFDISYVGADGEKHRPVMIHRGVISTLERFIAYLIEVYKGAFPTW---LAPTQATIIPVN 554

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +++  D   KI   L   G  V  D+  E++G +   +     P Q+++G +  +D  
Sbjct: 555 --NEIHADYAWKIQRELQDKGFRVVVDEANEKMGWKIRQSQTHKIPYQIVIGDQEQADGT 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V I+   +   E +  E+ I   S   +N
Sbjct: 613 VNIRRYGSKETEVIPFEDFIEKISADVAN 641


>gi|114777677|ref|ZP_01452637.1| prolyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114551893|gb|EAU54427.1| prolyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 572

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 148/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+P L++ P DAE+ SH+L+LR G I + + G+Y +LPL  + L  + AIIREE
Sbjct: 1   MRYSNCFVPTLRDVPADAEVISHQLLLRAGYIRRVTSGVYDYLPLALRVLRRIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P +Q  +LW +SGR   YG E+LR  DR+      GPTHEEV+ D+   
Sbjct: 61  MERAGAQELLMPMVQPTELWEKSGRLAKYGPELLRFEDRHAHQSCLGPTHEEVICDLMSR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E     Y  MF +
Sbjct: 121 ELRSYKQLPLNLYQIQNKFRDEIRPRFGLMRGREFVMKDAYSFHADDESLMAEYRNMFDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLAD+GE  +   +      
Sbjct: 181 YTRIFDRLGLRFRPVEADTGSIGGSDSHEFHVLADSGEDVIAHCESCEYAA 231



 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 4/191 (2%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+   +  D  P        +RGIEVG +F  G +Y+ PM   F+   GK     M
Sbjct: 379 AQLVDLRETRAGDGCPRCGGTIALSRGIEVGQVFALGRRYTEPMEVVFQNQQGKREVATM 438

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R++AAV+E  HD  GI WPD +APF + L+++   D    +A  +IY +L  
Sbjct: 439 GCYGIGVSRLMAAVVEQCHDDGGIAWPDVLAPFPVILVSMGKSD-AVLEASGEIYKQLQT 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV WD+  E+ G +F  A+L+G PLQ+++G + + +   E   R +  R ++++ +V
Sbjct: 498 AGIDVLWDERNERPGVKFKDAELIGIPLQIVIGDRGLKEGVAEFGRRGS-DRREVAIADV 556

Query: 435 INYASHRFSNN 445
           +  A+   +N 
Sbjct: 557 VAMATTELANR 567


>gi|170036087|ref|XP_001845897.1| threonyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167878588|gb|EDS41971.1| threonyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 699

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 157/440 (35%), Gaps = 43/440 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + +       H+ S G   + P G    + +   IR E  + 
Sbjct: 286 LKEWEKIQEEAAKRDHRKLGKEQELFFFHELSPGSCFFQPKGAHIYNTLMNFIRAEYRKR 345

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW  SG +  Y + M        +     P +      IF    +S
Sbjct: 346 GFQEVISPNIYNAKLWQTSGHWQHYAENMFSFESEK-ETFALKPMNCPGHCLIFDHRNRS 404

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F + P+  +            
Sbjct: 405 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCM-PDQIREEITGCLDFLKH 463

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 464 VYGVFGFTFNLV-LSTRPEKYLGEIEVWNDAEKALAESLDKFGEPWKENPGDG------- 515

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L     + 
Sbjct: 516 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----NYI 554

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +G K   V +    +G++  + A++  ++ GK   WP  ++P +I ++ +        
Sbjct: 555 DDNGEKKRPVIVHRAILGSVERMIAILTENYAGK---WPFWLSPRQIMVVPVGP---AYD 608

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+  RL   G     D D G+ +  +   A L  F   ++VG K  S   V ++ R
Sbjct: 609 EYADKVRLRLHDAGFMAEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTR 668

Query: 422 LTGIREDMSLEEVINYASHR 441
              +  ++S+EE++     +
Sbjct: 669 DNKVHGEVSVEELLVKLRRQ 688


>gi|312794183|ref|YP_004027106.1| prolyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181323|gb|ADQ41493.1| prolyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 572

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 162/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKSCGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
             +  N  +++    Y        E
Sbjct: 241 TPVENNEELKEKQEVYTPNVRTIEE 265



 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 3/223 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +  TD+   I   ++ +     +A   ++  + L       K    RGIEV
Sbjct: 349 KYLKNFVVGANKTDYH--IKNVNLSDFKVTKFADLRNITQDDLCPKCRSQKVTIERGIEV 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKY+   +  +    G+   + MG YGIG  R  AA+IE  HD  GIIWP +V
Sbjct: 407 GHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCYGIGINRTAAAIIEQMHDEDGIIWPITV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +  +D+       +IY +L K G +V  DD  E+ G +F  ADL+G P +V
Sbjct: 467 APYEVIVVPVNVNDENQNKIAFEIYEKLQKNGVEVLIDDRDERAGVKFKDADLIGIPFRV 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            VG K VS+ K+EI++R T    ++ +E+ I +  +     + 
Sbjct: 527 TVGKK-VSEGKLEIRNRRTKESFEVEIEKAIEFVINLIKEEKA 568


>gi|237749052|ref|ZP_04579532.1| prolyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229380414|gb|EEO30505.1| prolyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 587

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 125/225 (55%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+RTGMI +   GIY+++P+G + +  +  IIREE
Sbjct: 9   MRASQFFISTLKEAPADAEIISHKLMVRTGMIRRLGSGIYAYMPMGLRVIHKIENIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E+LR+ DR+D+  I  PT EEV+TDI R+
Sbjct: 69  MNRAGAVELLMPLVQPAELWQETGRWQKYGPELLRIKDRHDRDFIIQPTSEEVITDIARN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  MF +
Sbjct: 129 VIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVDGLKKSYQIMFDA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y++IF R GLK  P+ A++G IGG  SHEF V+A+TGE  +  S+
Sbjct: 189 YVKIFTRFGLKFRPVAADNGAIGGSGSHEFHVIAETGEDALVYSR 233



 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGT 292
              +  D+       E+        +D  N    D  P+ K      RGIEVGH+F  GT
Sbjct: 373 CGANEKDMHFTGVNWERDLPLPENIADFRNVVEGDPSPDGKGTLAIQRGIEVGHVFQLGT 432

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +YS  M+A++   +GK   +QMG YGIG  R+V A IE ++D KGIIWP S+APF++ L 
Sbjct: 433 RYSEDMNASYLDENGKPQLMQMGCYGIGVTRIVGAAIEQNNDDKGIIWPTSIAPFEVVLC 492

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  +   +++Y  L + G DV  DD GE+ G  F+  +L+G P ++++G + +
Sbjct: 493 PLGYDRSEAVKKTADELYESLKQSGIDVIMDDRGERPGVMFSDWELIGVPHRIVIGDRGL 552

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            D K+E + R       + + ++  +   + +  +
Sbjct: 553 KDGKLEYQGRRDTEATAIPVGDMAQFVIAKVAAEK 587


>gi|224541524|ref|ZP_03682063.1| hypothetical protein CATMIT_00694 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525561|gb|EEF94666.1| hypothetical protein CATMIT_00694 [Catenibacterium mitsuokai DSM
           15897]
          Length = 585

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 169/441 (38%), Gaps = 34/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L +         KG+  WLP G      ++  I  ++   G 
Sbjct: 172 LQLLEEAKERDHRKLGKELGIFM-FADIVGKGLPMWLPNGFTVRRLLSDYIMNKELELGY 230

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P+L +  L+ +SG +  Y  +M    + +D+A +  P +      +++S + SYR
Sbjct: 231 EHVMTPSLGNVKLYKKSGHWAHYKDDMFPAMELDDEAYVLRPMNCPHHMVMYKSTLHSYR 290

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +I   FR E      G+ R+R F   D++ F   P+     +  +    L ++
Sbjct: 291 DLPVRIAEIANDFRFEASGALTGIERARAFTQNDSHIF-CRPDQIAQEFKNVAHLILDVY 349

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G K    R                  D    + +   D +     SEN   + +  +
Sbjct: 350 KDFGFKDYSFRLSLR--------------DKNNKEKYFGNDELWE--KSENELREVLKEM 393

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +    +     A      + ++  +L  +  +S   ++    +    ++      T+   
Sbjct: 394 DVEFYEAEGEAAFYGPKLDVQVKSALGHDVTLSTIQLD----YQLPERF----ELTYVDE 445

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +G K   V +    +G++    A +     G   +W   +AP ++ +I +K   +   + 
Sbjct: 446 NGDKVRPVVIHRAILGSLDRFIAFLLEETKGNLPLW---LAPTQVQVIPVKL--EYHDEY 500

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++ A+L K    V  D+  E++G +   A L   P Q+++G     +  V  +     
Sbjct: 501 AKEVVAKLRKAHFRVNNDNRDEKLGYRIREAQLKKIPYQLVLGDNERDNGTVTYRKHGEK 560

Query: 425 IREDMSLEEVINYASHRFSNN 445
            +  ++ +E +   +    N 
Sbjct: 561 KQTTVTFDEFVELLNTEVENK 581


>gi|84516459|ref|ZP_01003818.1| threonyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84509495|gb|EAQ05953.1| threonyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 648

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 149/447 (33%), Gaps = 49/447 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L  L+E    A    H+ + R      + + + G   W P G      +   +R  Q
Sbjct: 234 KDHLHRLEE----AAKRDHRKLGREMNLFHMQEEAPGQVFWHPDGWTIYTELQDYMRRRQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G +E++ P +    LW +SG +D Y + M  +    + A         P +      
Sbjct: 290 RAGGYVEVNTPQVVDRKLWEKSGHWDKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D + F    +  +    
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIF-CREDQIEPETA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +      R++  LG     ++  + P     S     + +        +  +    +  E
Sbjct: 409 RFIAFLSRVYADLGFNDWTIKLSTRPEQRIGSDATWDMMEKALGDACRAAGYDFELLEGE 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++  N +     ++            
Sbjct: 469 GAFYGPKLEFTLT--------------------DAIGRNWQCGTLQVDANLPERL----- 503

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A + G DG+ H  V +    +G+      ++   H GK   W   +AP ++ +  I
Sbjct: 504 ---DAEYIGTDGEKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVATI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D    + A L+  G     D   E+I  +     +   P+ + VG++ V + 
Sbjct: 558 VSD---ADDYARDLVAALTAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGAREVEER 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
               +         ++++E++     R
Sbjct: 615 TATARQLGETQTRVVTMDEIVAELKQR 641


>gi|40062682|gb|AAR37595.1| threonyl-tRNA synthetase [uncultured marine bacterium 314]
          Length = 638

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 160/441 (36%), Gaps = 39/441 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y L + +   RD      ++ L      + S G   W   G      +   +R +Q 
Sbjct: 229 LDEYLLRLEEIEKRDHRKLGKEMDLF--HFREESPGAVFWHHKGWTLFQTLVGYMRLKQK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E++ P +   +LW +SG ++ +G+ M      + K     P +      IF   +
Sbjct: 287 KAGYKEINTPEILDKNLWEQSGHWEKFGENMFTSETPDKKTFAIKPMNCPGCLQIFNQGL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R E      G++R R F   DA+ F  T +        +    
Sbjct: 347 KSYRDLPLRLSEFGKVHRYEPSGALHGLLRVRAFTQDDAHIF-CTEDQITDECLSVTNLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I+  LG K++ ++    P       +    A++   +              E      
Sbjct: 406 LEIYKDLGFKNVLLQYSDRPQKRVGDDKIWDKAESALLKAIKQSKLKYEINKGEG----- 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  L D++  + +     +++      G        A+
Sbjct: 461 ---------------AFYGPKIDFVLRDTIGRDWQCGTLQVDLNLPSRLG--------AS 497

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +DG K   V +     G++     ++   + GK  +W   +AP +  ++ I +    
Sbjct: 498 YVSSDGSKKVPVMLHRALFGSLERFIGILIEHYAGKLPLW---LAPIQAVVLPIAS---E 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +KI+ +  K G +   D   ++I  +     L   PL +I G K V    V I+ 
Sbjct: 552 FDNYAKKIFEQCMKAGINTEVDLKNKKINYKIREHSLSKVPLLLICGEKEVKGKSVTIRK 611

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +  +E +SL+  I   S +
Sbjct: 612 LGSEKQETLSLDRAIKKISQQ 632


>gi|319902630|ref|YP_004162358.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Bacteroides
           helcogenes P 36-108]
 gi|319417661|gb|ADV44772.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Bacteroides
           helcogenes P 36-108]
          Length = 646

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 155/452 (34%), Gaps = 48/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q 
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               +F  +  ++   +      +  D         +  E  +  +              
Sbjct: 406 IISIVFQSMDFENFEAQISLRDKVNRDKYIGSDENWEKAEQAIIEA-------------- 451

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
                                     E    +    K        +G  +  GT    Y+
Sbjct: 452 ----------------CEEKGLKARIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYN 495

Query: 296 LP--MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + GAD + H   M      G+M    AV+     GK  +W   + P +++++
Sbjct: 496 LPERFQLEYTGADNQKHRPVMVHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQVAIL 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +   D  +++   L K       D+  E+IG +    ++   P  ++VG K   
Sbjct: 553 PI---SEKFNDYAQEVKLFLKKYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAE 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + ++ ++ +  G +  M +EE     S    N
Sbjct: 610 NKEIAVRKQGEGDKGTMKIEEFAKKISEEVQN 641


>gi|199599516|ref|ZP_03212905.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258508749|ref|YP_003171500.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199589585|gb|EDY97702.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257148676|emb|CAR87649.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|259650055|dbj|BAI42217.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 657

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 167/437 (38%), Gaps = 37/437 (8%)

Query: 16  RDAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           ++A    H+++ R   +     +   G+  W+P G      +   I +++   G   +  
Sbjct: 234 KEAAERDHRVIGRDLDLFFVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYEHVYT 293

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPF 130
           P L + DL+  SG +D Y ++M    D  D  M+   P +      I+  HI+SYR LP 
Sbjct: 294 PVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPL 353

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    
Sbjct: 354 RIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFKKILRLIMDVYEDFN 412

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +     R                  D   T+ +   D M     S      D + L+   
Sbjct: 413 ITDYSFRLSYR--------------DPKNTEKYFDDDEMWTRSQSMLKGAMDDLHLD--Y 456

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            +     A      + +   +L  ++ +S   ++    F    +++L    T+ G DG++
Sbjct: 457 YEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----TYVGKDGEE 508

Query: 310 HYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H   M   G +G M    A +   + G    W   +AP +  LI +   + +  D   +I
Sbjct: 509 HRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPTQAVLIPVN--NDLHLDYVNRI 563

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++       E+
Sbjct: 564 KRQMQAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDEHTEE 623

Query: 429 MSLEEVINYASHRFSNN 445
            +    I+       N 
Sbjct: 624 EAGNMFIDAMVAEVKNY 640


>gi|222528589|ref|YP_002572471.1| prolyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|254782881|sp|B9MPD7|SYP_ANATD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222455436|gb|ACM59698.1| prolyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 572

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/265 (45%), Positives = 160/265 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+   G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDENGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           + +      ++    Y        E
Sbjct: 241 EPVENKEEPKEKQEVYTPNVRTIEE 265



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 3/223 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +  TD+   I   ++ +     +    ++  + L       K    RGIEV
Sbjct: 349 KYLKNFVVGANKTDYH--IKNVNLSDFKVTKFTDLRNITQDDLCPKCRSQKVTIERGIEV 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKY+   +  +    G+   + MG YGIG  R  AA+IE  HD  GIIWP +V
Sbjct: 407 GHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCYGIGINRTAAAIIEQMHDEDGIIWPITV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +   D+  +    +IY  L + G +V  DD  E+ G +F  ADL+G P +V
Sbjct: 467 APYEVIIVPVNVKDENQKKIAFEIYENLQRNGVEVLIDDRDERAGVKFKDADLIGIPFRV 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            VG K +S+ K+EI++R T    ++ +E+ I    +     + 
Sbjct: 527 TVGKK-ISEGKLEIRNRRTKESFEVEIEKAIEVVINLIREEKA 568


>gi|71906284|ref|YP_283871.1| prolyl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|114152186|sp|Q47ID0|SYP_DECAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71845905|gb|AAZ45401.1| Prolyl-tRNA synthetase, bacterial [Dechloromonas aromatica RCB]
          Length = 576

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F   L+E P DAE+ S K+MLR G I + + GIY+W+PLG + L  V  I+REE
Sbjct: 1   MRTSQFFFTTLKEAPADAEVISQKMMLRAGYIKRAAAGIYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRHQREFVIGPTHEEVITDVVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSF  + +  K  Y  M+ +
Sbjct: 121 DVKSYRQLPIHLYQIQTKFRDEIRPRFGVMRGREFLMKDGYSFHASFDDLKREYGNMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +   
Sbjct: 181 YSRIFSRLGLKFRAVAADTGSIGGTGSHEFHVLADSGEDDIAFC 224



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 3/203 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +  +      P     D+ N    D+ P  + K    RGIEVGHIF    KY+  ++ 
Sbjct: 371 YHMTGVNFGRDLPEPEVFDIRNVVAGDASPDGQGKLEILRGIEVGHIFQLRQKYAEALNC 430

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
            +    GK   ++MG YGIG  R+V A IE  +D KGII P ++APF++ ++ +  H  +
Sbjct: 431 VYLDDSGKSQIMEMGCYGIGVSRIVGAAIEQGNDDKGIILPPAIAPFEVCIVPMGYHKSE 490

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             + + +++YA L K+G DV  DD  E+ G  FA  +L+G P +V++G + + D   E K
Sbjct: 491 AVKASADQLYADLKKIGVDVVLDDRNERPGVMFADMELIGIPHRVVIGERGLKDGLFEYK 550

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R+      ++  +++     + 
Sbjct: 551 SRIDAEPTMVAQTDIVTLLQGKL 573


>gi|312128280|ref|YP_003993154.1| prolyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778299|gb|ADQ07785.1| prolyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 572

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 163/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           + +  N  +++    Y        E
Sbjct: 241 EPVENNEELKEKQEVYTPNVRTIEE 265



 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +  TD+   I   ++ +     +A   ++  + L       K    RGIEV
Sbjct: 349 KYLKNFVVGANKTDYH--IKNVNLSDFKVTKFADLRNITQDDLCPKCRSQKVTIERGIEV 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKY+   +  +    G+   + MG YGIG  R  AA+IE  HD  GIIWP +V
Sbjct: 407 GHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCYGIGINRTAAAIIEQMHDEDGIIWPITV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +   D+       +IY  L K G +V  DD  E+ G +F  ADL+G P +V
Sbjct: 467 APYEVIVVPVNVKDENQNKIAFEIYENLQKNGVEVLIDDRDERAGVKFKDADLIGIPFRV 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            VG K +S+ K+EI++R T    ++ +E+ I +  +     + 
Sbjct: 527 TVGKK-ISEGKLEIRNRRTKESFEVEIEKAIEFVMNLIKEEKA 568


>gi|307251435|ref|ZP_07533349.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306856519|gb|EFM88661.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 571

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L     DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQDVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|237742688|ref|ZP_04573169.1| prolyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229430336|gb|EEO40548.1| prolyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 567

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 102/203 (50%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N    +             +   + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNVNYGRDYTADIVADIRTAKVGENCIIGGKLHSARGIECGQIFKLGDKYSKVMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+   +GK  Y+ MG YGIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V
Sbjct: 424 TYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEV 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EKIY  L +   D   DD  E+ G +F  ADL+GFP +++VG +   +  VE+K 
Sbjct: 484 QVSLAEKIYNELEEEKIDAMLDDRDEKPGFKFKDADLIGFPFKIVVGKR-ADEGIVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++S  EVI        
Sbjct: 543 RRTGETLEISQNEVIAKIKELMK 565


>gi|189345705|ref|YP_001942234.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|238692169|sp|B3EEC1|SYT_CHLL2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189339852|gb|ACD89255.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 657

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 161/454 (35%), Gaps = 44/454 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  +   +E  R D      +L L   +  +   G+  WLP G      +   ++EE
Sbjct: 237 KLLKEHIARQEEAKRRDHRKLGTELELFM-LSPEIGSGLPVWLPKGAVIRSELETFLKEE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMT 115
           Q + G + +  P + + +L+  SG Y  Y             D   +  +  P +     
Sbjct: 296 QRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEDGKQEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +  TPE      
Sbjct: 356 LIYSSKLRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIY-CTPEQLVDEI 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                    +F  LG   +  R                + D    Q +     +      
Sbjct: 415 CNAIDLTQFVFGTLGFSEVQTRLS--------------MHDPANQQKYGGTAEIWEQAEK 460

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +  +  D + ++  +    A +         +             R  ++G +      Y
Sbjct: 461 DVREAADRMGIDYFIGVGEASFYGPKIDFIVRD---------ALGRKWQLGTV---QVDY 508

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +P     ++ G+DG+ H  V +     G+M     V+     G   +W   +AP +  +
Sbjct: 509 VMPERFDLSYIGSDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLW---LAPVQAVV 565

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  + I+  L   G  V  D   E+IG +   A++   P  +IVG K  
Sbjct: 566 LPIA---EEVHDYAKTIHTALLAAGIRVEIDTRNEKIGRKIREAEIGKIPCMIIVGQKER 622

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              ++ ++   +G     ++  +I+      S  
Sbjct: 623 DSGEISLRRHRSGDMGSFTVPGLIDILKKEISER 656


>gi|194223978|ref|XP_001498225.2| PREDICTED: threonyl-tRNA synthetase [Equus caballus]
          Length = 722

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 154/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 305 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYR 364

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 365 KRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 423

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 424 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAI-EQIEDEIKGCLDFL 482

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                 P +      
Sbjct: 483 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWVLNPGDG----- 536

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 537 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 575

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 576 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 629

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +       V  D D G  +  +   A L  +   ++VG K  +   V I+ 
Sbjct: 630 DEYAQKVRQQFHDAKFMVDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRT 689

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + +L E I        + 
Sbjct: 690 RDNKVHGERTLSETIERLQQLKQSR 714


>gi|191638692|ref|YP_001987858.1| threonyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|239632065|ref|ZP_04675096.1| ser-tRNA(Thr) hydrolase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|238693055|sp|B3WF49|SYT_LACCB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190712994|emb|CAQ67000.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Lactobacillus casei BL23]
 gi|239526530|gb|EEQ65531.1| ser-tRNA(Thr) hydrolase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327382733|gb|AEA54209.1| Threonyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327385920|gb|AEA57394.1| Threonyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 657

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 164/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +    D  +    L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 235 EAAEHDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYEHVY 292

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+  SG +D Y ++M    D  D  M+   P +      I+  HI+SYR LP
Sbjct: 293 TPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELP 352

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 353 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFKKILRLIMDVYEDF 411

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S      D + L+  
Sbjct: 412 NITDYSFRLSYR--------------DPKNTEKYFDDDEMWTRSQSMLKGAMDDLKLD-- 455

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++    F    +++L    T+ G DG+
Sbjct: 456 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----TYVGKDGE 507

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  LI +   + +  D   +
Sbjct: 508 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPTQAVLIPVN--NDLHLDYVNR 562

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++       E
Sbjct: 563 IKKQMLAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDEHTE 622

Query: 428 DMSLEEVINYASHRFSNN 445
           + +    I+       N 
Sbjct: 623 EEAGNMFIDALVAEVKNY 640


>gi|294784787|ref|ZP_06750075.1| proline--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294486501|gb|EFG33863.1| proline--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 567

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 101/203 (49%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N    +             +   + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNVNYGRDYTADIVADIRTAKVGENCIIGGKLHSARGIECGQIFKLGDKYSKVMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+   +GK  Y+ MG YGIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V
Sbjct: 424 TYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEV 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EKIY  L +   D   DD  E+ G +F  ADL+GFP +++VG +   +  VE+K 
Sbjct: 484 QVSLAEKIYNELEEEKIDAMLDDRDEKPGFKFKDADLIGFPFKIVVGKR-ADEGIVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++   E+I        
Sbjct: 543 RRTGETLELPQNEIIAKIKELMK 565


>gi|292489201|ref|YP_003532088.1| prolyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292898564|ref|YP_003537933.1| prolyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291198412|emb|CBJ45519.1| prolyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291554635|emb|CBA22316.1| Prolyl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 572

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M  +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +  S +     
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSSESDYAA 231



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I  +   P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGQHFSGINWERDLPLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +    
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E +Y +L   G DV  DD  E+ G  FA  +L+G P  ++VG + +   +VE
Sbjct: 486 SFRVKELAEALYHQLRAKGIDVILDDRKERPGVMFADMELIGVPHTIVVGERHLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R  G +  +   E+I++     + 
Sbjct: 546 YKSRRAGEKRMIKTNEIIDFLVEELAQ 572


>gi|127513524|ref|YP_001094721.1| prolyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166980157|sp|A3QG64|SYP_SHELP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126638819|gb|ABO24462.1| prolyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 569

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNNAGAVEILMPMVQPADLWVETGRWDKFGPELLRFQDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDDTYQAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  R+GL   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 181 YSNILGRMGLAFRPVLADTGSIGGSMSHEFHVLANSGEDLIAYS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 113/204 (55%), Gaps = 3/204 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
            D      I  +   P A  +D+ N    +  P  K      RGIEVGHIF  GT YS  
Sbjct: 364 QDGKHYVGINWERDLPQAEVADLRNVIEGEPSPCGKGTIGLLRGIEVGHIFQLGTNYSKA 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M A+    +GK   + MG YG+G  R+VAA IE +HD +GIIWP ++APFK+ ++ +  H
Sbjct: 424 MGASVLDENGKAQTLLMGCYGVGVSRIVAAAIEQNHDDRGIIWPAAIAPFKVGILPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  EK+Y+ LS  G +V +DD  E+ G  FA  +L+G P  +++G + + +   
Sbjct: 484 KSHRIKDMAEKLYSDLSDAGIEVLFDDRKERPGVMFADMELIGLPHVIVIGERNIDNGVF 543

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
           E K+R TG ++++  EE++++   
Sbjct: 544 EYKNRRTGEKQEIPFEEIVDFIKS 567


>gi|301066747|ref|YP_003788770.1| threonyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300439154|gb|ADK18920.1| Threonyl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 657

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 164/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +    D  +    L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 235 EAAEHDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYEHVY 292

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+  SG +D Y ++M    D  D  M+   P +      I+  HI+SYR LP
Sbjct: 293 TPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELP 352

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 353 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFKKILRLIMDVYEDF 411

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S      D + L+  
Sbjct: 412 NITDYSFRLSYR--------------DPKNTEKYFDDDEMWTRSQSMLKGAMDDLKLD-- 455

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++    F    +++L    T+ G DG+
Sbjct: 456 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----TYVGKDGE 507

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  LI +   + +  D   +
Sbjct: 508 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPTQAVLIPVN--NDLHLDYVNR 562

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++       E
Sbjct: 563 IKKQMLAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDEHTE 622

Query: 428 DMSLEEVINYASHRFSNN 445
           + +    I+       N 
Sbjct: 623 EEAGNMFIDALVAEVKNY 640


>gi|301300332|ref|ZP_07206537.1| threonine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852068|gb|EFK79747.1| threonine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 649

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 161/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 240 EARERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEVAWGFQHVY 297

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L +  L+ +SG +D Y ++M    D  D  M+   P +      ++  H +SYR LP
Sbjct: 298 TPVLANLSLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHKRSYRELP 357

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D + F + P+  +     +      +++  
Sbjct: 358 LRIAELGMMHRYEKSGALTGLSRVREMTLNDGHDF-IEPDHIEDEIKTLIKLMTEVYNDF 416

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S+     D +     
Sbjct: 417 DITDYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQSKLKAAMDDMG--LE 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + GADG+
Sbjct: 461 YFEAEGEAAFYGPKIDVQTKTALGGEETLSTIQLD----FLLPERF----DLKYIGADGE 512

Query: 309 DHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   GI +      A +   + G    W   +AP ++ +I +K  + +  D    
Sbjct: 513 EHRPVMVHRGIVSTMERFTAYLTEMYKGAFPTW---LAPHQVDIIPVK--NDLHMDYVND 567

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + ++L   G  V  DD  E++G +   A +   P  +++G + VS+  V ++        
Sbjct: 568 LSSKLRAHGIRVTVDDRNEKMGYKIRQAQVNKIPYTLVIGDEEVSNGTVTVRKYGEEKTN 627

Query: 428 DMSLEEVINYASHRFSNN 445
            M+  E  N       N 
Sbjct: 628 TMTKAEFKNLLFEDIENY 645


>gi|328553230|gb|AEB23722.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 638

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 166/448 (37%), Gaps = 41/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L    +  ++AE  +H+ +   L+  M  + + G+  +LP GQ   + + + +R 
Sbjct: 225 ASKKELNRHFQLLKEAEKRNHRKLGAELQLFMFSEEAPGMPFYLPNGQFIRNTLESFLRS 284

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +Q+     E+  P + +  LW +SG +D Y + M   ++ + +     P +      IF+
Sbjct: 285 KQDAYHYQEVRTPMMMNQRLWEQSGHWDHYKENMY-FSEADQQRFALKPMNCPGHMLIFK 343

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR LP    +     R E      G++R R F   DA+ F +TP+  +       
Sbjct: 344 ERLRSYRELPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-VTPDQIESEIASAL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++   G     +   + P     S      A++   +V   + +           
Sbjct: 403 QLIHEVYTAFGFSY-DIELSTRPEDYMGSERLWDRAESALERVLKEQGYD---------- 451

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      +  + D+L  + + +   ++    F    K+    
Sbjct: 452 ----------FRFNRGDGAFYGPKIDIHIKDALNRSHQCATVQLD----FQMPEKF---- 493

Query: 299 SATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+     +    V +     G++     +I   + G   +W   +AP +  +I +   
Sbjct: 494 DLTYIDEKNQKVRPVVIHRAVFGSLDRFLGIITEHYGGAFPLW---LAPVQAKIIPVS-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           + V RD  E+++ ++ K G     D   E++G +   A +   P   +VG +      V 
Sbjct: 549 NTVHRDCAEQVHRQMKKAGIRAELDQRDEKLGYKIREAQIKKIPYIAVVGDQECRHHTVH 608

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++        + ++ + ++   +  +  
Sbjct: 609 VRQYGQEDTFEENVSDFVSRIINETNKR 636


>gi|254441196|ref|ZP_05054689.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198251274|gb|EDY75589.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 649

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 152/447 (34%), Gaps = 49/447 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + K  L +L+E    A    H+ + R      + + + G   W P G      +   +R 
Sbjct: 233 QLKAHLHMLEE----AAKRDHRKLGREMNLFHMQEEASGQIFWHPNGWLIFTQLQDYMRR 288

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVM 114
           +Q   G +E++ P +    LW +SG ++ + + M  +    + A         P +    
Sbjct: 289 KQRAGGYVEVNTPQVVDRKLWEQSGHWEKFQEHMFIVEVDEEHAREKAVNALKPMNCPCH 348

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             I+   +KSYR+LP    +     R E      G+MR R F   D + F  T E  +  
Sbjct: 349 VQIYNQGLKSYRDLPVRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIF-CTEEQIEVE 407

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                     ++  LG     ++    P     S E                        
Sbjct: 408 TIAFIALLSEVYQDLGFSDFKVKFSDRPDVRSGSDEVWD--------------------K 447

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +E        +            A         L D++  + +     ++    F    +
Sbjct: 448 AEAALLAATRAAGIEPTLNPGEGAFYGPKLEFVLTDAIGRDWQCGTHQVD----FVLPER 503

Query: 294 YSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
               + A + G+DG+ H  V +    +G+      ++   H GK   W   +AP ++ + 
Sbjct: 504 ----LDANYIGSDGEKHRPVMLHRALLGSFERFIGILIEEHAGKLPFW---LAPRQVVVA 556

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++ A L+  G     D   E+I  +     L   P+ +  G++ V 
Sbjct: 557 SIISD---ADDYVREVVAALNAKGVRAEADIRNEKINYKVREHSLGKVPVILACGAREVE 613

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
           D  V ++          +L  +++   
Sbjct: 614 DRTVSVRRLGEKQTSVTTLAAIVDDLQ 640


>gi|323466103|gb|ADX69790.1| Threonyl-tRNA synthetase 1 [Lactobacillus helveticus H10]
          Length = 661

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 161/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD       L L    +  +   G+  W+P G      V   I + +   G   + 
Sbjct: 252 EIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVY 309

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +  Y  +M    D  D  M+   P +      IF+ HI+SYR+LP
Sbjct: 310 TPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLP 369

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 370 LRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQTEFAKILKLIMDVYKDF 428

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T  + + D M            D + L+ +
Sbjct: 429 DITDYYFRLSYR--------------DPKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYV 474

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + +   +L  ++ +S   ++      FG         T+ G DG+
Sbjct: 475 EA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPDRFG--------LTYVGKDGE 524

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  +I +   ++   +  EK
Sbjct: 525 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--NEAHGEYAEK 579

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L+K G  V  DD  E++G +   +     P  +++G + +   KV ++   T    
Sbjct: 580 VRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNVRCYGTDEEI 639

Query: 428 DMSLEEVINYASHRFSNN 445
             SL++ IN       + 
Sbjct: 640 SKSLDDFINEIDADVKSY 657


>gi|253995828|ref|YP_003047892.1| prolyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253982507|gb|ACT47365.1| prolyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 573

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/225 (49%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P +AE+ SH LM+R G+I +   G+YSW+PLG + L  V  ++REE
Sbjct: 1   MRASQFFFNTQKEAPNEAELQSHILMVRAGLIKRLGSGLYSWMPLGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MNNAGALELLMPAVQPKELWEETGRWAVFGPQMLKIQDRHEREFCFGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EIRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHTDFASLEQTYDTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F RLGLK   ++A++G IGGD SHEF VLAD+GE  +   +
Sbjct: 181 YSNVFTRLGLKFRAVKADTGAIGGDGSHEFHVLADSGEDGLAYCE 225



 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 3/182 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D+ P+ K      RGIEVGHIF   TKYS  MSAT+   +G+   ++MG YGIG
Sbjct: 391 RNVVAGDASPDGKGVLSLCRGIEVGHIFQLRTKYSEAMSATYLDENGQTQVMEMGCYGIG 450

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R+V A IE  +D +GII+P S+APF++ +  I     +  + A +K++  L   G DV
Sbjct: 451 VSRIVGAAIEQGNDERGIIFPKSMAPFEVVICAIGYDKSEAVQAATKKLHDELQAAGVDV 510

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD GE+ G  FA ADL+G P ++++G + +++  VE K R     + ++L  V+ +  
Sbjct: 511 LLDDRGERPGVMFAEADLMGIPHRLVIGERGLNEGNVEYKARTQADAQSVALASVVEFVQ 570

Query: 440 HR 441
             
Sbjct: 571 KL 572


>gi|71895375|ref|NP_001026618.1| threonyl-tRNA synthetase, cytoplasmic [Gallus gallus]
 gi|53128235|emb|CAG31282.1| hypothetical protein RCJMB04_4k14 [Gallus gallus]
          Length = 711

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 154/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 294 KMLKEWEKFQEEAKNRDHRKIGRDQELFFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYR 353

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 354 KRGFQEVVTPNIFNSKLWMTSGHWQHYSENMFSFEVEK-EIFALKPMNCPGHCLMFDHRP 412

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F  + E  +          
Sbjct: 413 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CSVEQIEEEIKSCLQFL 471

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                 P +      
Sbjct: 472 RAVYDVFGFSF-KLNLSTRPEKYLGDIEVWNRAEKQLENSLNDFGEKWELNPGDG----- 525

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 526 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLSIRFNLTF--V 564

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               + K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 565 SHDGNDKTRPVIIHRAILGSVERMIAILTENYGGK---WPLWLSPQQVMVVPVGP---TC 618

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +    G     D D G  +  +   A L  +   ++VG K  +   V I+ 
Sbjct: 619 DEYAQKVRQQFHDAGLMADIDVDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRT 678

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ + +      
Sbjct: 679 RDNKVHGERTIADTVKRLLEL 699


>gi|312173361|emb|CBX81615.1| Prolyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 572

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M  +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +  S +     
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSSESDYAA 231



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I  +   P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DGQHFSGINWERDLPLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +    
Sbjct: 426 KASVQGEDGRNQILTMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E +Y +L   G DV  DD  E+ G  FA  +L+G P  ++VG + +   +VE
Sbjct: 486 SFRVKELAEALYHQLRAKGIDVILDDRKERPGVMFADMELIGVPHTIVVGERHLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K R  G +  +   E+I++     + 
Sbjct: 546 YKSRRAGEKRMIKTNEIIDFLVEELAQ 572


>gi|194765983|ref|XP_001965104.1| GF21565 [Drosophila ananassae]
 gi|190617714|gb|EDV33238.1| GF21565 [Drosophila ananassae]
          Length = 749

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 157/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   ++ E  + 
Sbjct: 336 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMDFMKAEYRKR 395

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M       +K     P +      IF +  +S
Sbjct: 396 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEVEKEK-FALKPMNCPGHCLIFDNRNRS 454

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 455 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKH 513

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 514 VYTIFGFSFQLV-LSTRPEKYLGELEQWNDAEKALAESLNEFGMPWKENPGDG------- 565

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 566 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 604

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 605 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 658

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 659 QYAQSVRDQLHAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 718

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 719 DNKVHGEVSVAELITKLQK 737


>gi|260889054|ref|ZP_05900317.1| proline--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260861114|gb|EEX75614.1| proline--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 570

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 127/306 (41%), Positives = 178/306 (58%), Gaps = 1/306 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++A+I SH+LMLR  MI Q ++G+Y++LP G + L  +  I REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAQIVSHQLMLRAFMIKQLTRGVYTYLPFGYRVLKKIENITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TDI R 
Sbjct: 61  MDRAGAQELLMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFSLGPTHEEVITDIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REF+MKD YSF LT E     Y  M  +
Sbjct: 121 SISSYKELPFNVYQIQTKFRDEMRPRFGLMRGREFVMKDGYSFHLTQESLDEEYLNMKDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    + A++G IGGD+SHEF+VLA++GE  +  S          + T   
Sbjct: 181 YSRIFERMGLNYRAVEADTGSIGGDVSHEFMVLAESGEDDILYSDSSDYAANVEKATSII 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++   +             +    E   + L   K  + + + +  +   G K+ + +  
Sbjct: 241 ELKESDEEKLPKELVETPNAKTIEELA-NFLNIPKEKTVKAVMLKEVLEDGEKFVMALIR 299

Query: 301 TFKGAD 306
                +
Sbjct: 300 GDLDVN 305



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 111/204 (54%), Gaps = 1/204 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   +N  +E      AA              +     ARGIEVGHIF  G KYS  ++A
Sbjct: 368 DYHYVNVNIEDLAYDLAADIRTARAGDLSPDGKGILKIARGIEVGHIFKLGEKYSKALNA 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    +GK   ++MG YG+G  R+++A IE +HD  GIIWP ++AP+   +I     D+ 
Sbjct: 428 TVLDENGKQAIMKMGCYGMGMSRIISAAIEQNHDEYGIIWPKAIAPYHADIIIANMKDET 487

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EK+Y  L++   +   DD  E+ G +F  ADL+GFPL+++VG K  +D  VEIK 
Sbjct: 488 QVNIGEKLYNELNQNKIEAVLDDRNERAGFKFKDADLIGFPLKIVVG-KGAADGIVEIKD 546

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG   D+ +E+V+ + ++  + 
Sbjct: 547 RKTGESTDVKVEDVLKFVNNFMAE 570


>gi|88860213|ref|ZP_01134852.1| prolyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88818207|gb|EAR28023.1| prolyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 573

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/225 (52%), Positives = 160/225 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V AI+R+E
Sbjct: 1   MRTSQYILATLKEVPSDAEIISHQLMLRAGMIRRLASGLYTWLPSGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GAIEM +P +Q ADLW+ESGR++ +G E+LR+ DR+++    GPTHEEV+T+  R 
Sbjct: 61  MEKAGAIEMLMPVIQPADLWIESGRWEQFGPELLRIKDRHNREFALGPTHEEVITEFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ K RDE+RPRFGVMR+REF MKDAYSF L+ E   ++Y  M  +
Sbjct: 121 EVSSYKQLPLNLFQIQTKVRDEVRPRFGVMRAREFTMKDAYSFHLSDECLANTYAIMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F R+GL+  P+ A++G IGG +SHEF VLA++GE  +  S 
Sbjct: 181 YCNVFERIGLEYRPVIADTGSIGGSVSHEFHVLAESGEDAIAFSS 225



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 2/175 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RGIEVGHIF  GTKYS  M A      GK+  + MG YGIG  R+VAA I
Sbjct: 399 PCGNGTLSIKRGIEVGHIFQLGTKYSDAMKAGVLNETGKNQIMTMGCYGIGVSRIVAAAI 458

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E + D KGI+WP ++APF+I+++ +  H         E+IY  L   G +V +DD  E+ 
Sbjct: 459 EQNFDAKGIVWPKAIAPFQIAIVPMNMHKSHRIPAVAERIYQELKAAGIEVLFDDRKERP 518

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  F   +L+G P  +++G + + D+ VE K R +G     +L+ V+     +  
Sbjct: 519 GVMFNDMELIGIPHTLVIGERNLDDNCVEYKSR-SGENAMYNLDTVVAELIAKIR 572


>gi|303252707|ref|ZP_07338869.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307248901|ref|ZP_07530912.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648446|gb|EFL78640.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306854596|gb|EFM86788.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 571

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L     DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQDVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|78186013|ref|YP_374056.1| threonyl-tRNA synthetase, class IIA [Chlorobium luteolum DSM 273]
 gi|78165915|gb|ABB23013.1| Ser-tRNA(Thr) hydrolase [Chlorobium luteolum DSM 273]
          Length = 677

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 155/455 (34%), Gaps = 46/455 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLM---LRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           S+  L    E   +A    H+ +   L+  M+      G+  WLP G      +   +++
Sbjct: 255 SEKLLKEHLERLEEARKRDHRRLGQELKLFMLSPEIGSGLPVWLPKGAIIRQELETFLKD 314

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVM 114
           EQ R G + +  P + + +L+  SG Y  Y             D   +  +  P +    
Sbjct: 315 EQRRRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEDGKQEQYLLKPMNCPHH 374

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +   P+     
Sbjct: 375 HLIYSSEMRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIY-CRPDQLVDE 433

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                     +F  LG  ++  R                + D      +     +     
Sbjct: 434 ICNAIDLTQFVFRTLGFDAVETRLS--------------MHDPENQTKYGGTPEVWEQAE 479

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +  +  D + +   +    A +         +             R  ++G +      
Sbjct: 480 KDVKEAADRMGIKYFIGIGEASFYGPKIDFIVRD---------ALGRKWQLGTV---QVD 527

Query: 294 YSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           Y +P     T+ G DG+ H  V +     G+M     V+     G   +W   +AP +  
Sbjct: 528 YVMPERFDLTYVGNDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLW---LAPVQAV 584

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ I    +   D    +   +   G     D   E+IG +   ++L   P  V+VG K 
Sbjct: 585 VLPIA---EDVHDYAAGVRNAMLAAGIRTELDLRSEKIGKKIRESELSKIPYMVVVGQKE 641

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                V ++    G    +S++++I          
Sbjct: 642 EEKGAVSLRRHRKGDEGTLSIQDMIERLREEIDRK 676


>gi|312870359|ref|ZP_07730484.1| threonine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311094060|gb|EFQ52379.1| threonine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 600

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 163/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +    D  +  ++L L    +  +   G+  W+P G      +   I + +   G   + 
Sbjct: 191 EAREHDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGATIRRTIERYIIDREVADGYEHVY 248

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG ++ Y  +M    D  D  M+   P +      I++ HI+SYR+LP
Sbjct: 249 TPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLEIRPMNCPSHIQIYKHHIRSYRDLP 308

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 309 MRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-VDQIRDEFAKILNLIMDVYKDF 367

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + +   D M            D ++L+  
Sbjct: 368 DITDYSFRLSLR--------------DPKNKEKYYGNDEMWDESQKLLKAAMDDLNLD-- 411

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         ++ G DGK
Sbjct: 412 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMQPDRFG--------LSYVGKDGK 463

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   ++   D  +K
Sbjct: 464 EHMPVMIHRGIVGTMERFVAYLTEIYKGAFPTW---LAPEQVHIIPVS--EEKHGDYAQK 518

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++      V  DD  E++G +   A     P  ++VG   V ++ V ++      + 
Sbjct: 519 LADKMKAAQIRVVVDDRNEKMGYKIREAQTQKVPYTLVVGDDEVKNNAVSVRKYGEDAQN 578

Query: 428 DMSLEEVINYASHRFSNN 445
            MS ++ +N      ++ 
Sbjct: 579 SMSQDDFMNEILADIASY 596


>gi|307246760|ref|ZP_07528828.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307255744|ref|ZP_07537547.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307260196|ref|ZP_07541905.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306852335|gb|EFM84572.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306861304|gb|EFM93295.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306865741|gb|EFM97620.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 571

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|161507864|ref|YP_001577828.1| theronyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048343|sp|A8YWE1|SYT_LACH4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160348853|gb|ABX27527.1| Theronyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 644

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 161/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD       L L    +  +   G+  W+P G      V   I + +   G   + 
Sbjct: 235 EIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRAVERYIIDREVADGYQHVY 292

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +  Y  +M    D  D  M+   P +      IF+ HI+SYR+LP
Sbjct: 293 TPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLP 352

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 353 LRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQTEFAKILKLIMEVYKDF 411

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T  + + D M            D + L+ +
Sbjct: 412 DITDYYFRLSYR--------------DPKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYV 457

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + +   +L  ++ +S   ++      FG         T+ G DG+
Sbjct: 458 EA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPDRFG--------LTYVGKDGE 507

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  +I +   ++   +  EK
Sbjct: 508 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--NEAHGEYAEK 562

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L+K G  V  DD  E++G +   +     P  +++G + +   KV ++   T    
Sbjct: 563 VRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTDEEI 622

Query: 428 DMSLEEVINYASHRFSNN 445
             SL++ IN       + 
Sbjct: 623 SKSLDDFINEIDADVKSY 640


>gi|218886086|ref|YP_002435407.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226701453|sp|B8DPN2|SYT_DESVM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218757040|gb|ACL07939.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 644

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 151/442 (34%), Gaps = 41/442 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  ++E  R D      +L L        + G+  W P G      +   +R+E
Sbjct: 225 KALKDHLHQIEEAKRRDHRKLGQQLDLFAFH-EDVAPGMVYWHPKGMLLRTILEDFLRKE 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P L   ++W +SG YD+Y + M      +D A    P +      I++S
Sbjct: 284 HLKRGYELVQGPQLLRREVWEKSGHYDNYRENMY-FTVIDDNAYGVKPMNCVSHMLIYKS 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H++SYR+LP   +++ +  R E      G++R R+F   DA+     P+  +     +  
Sbjct: 343 HLRSYRDLPRRMFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIL-CRPDQLEAEIIGVIA 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +    G     +   + P     S E    A         +          +    
Sbjct: 402 LVRDLMGLFGFDYRIV-ISTRPEKSIGSDEDWDRATNALIGAVATAGLSHTINEGDG--- 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    ++S   ++    F    ++     
Sbjct: 458 -----------------AFYGPKIDIKVTDAIGREWQLSTIQVD----FTLPDRF----D 492

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DG+ H   M     +G++     V+     G    W   + P +  L+ +    
Sbjct: 493 LVYIGQDGERHRPVMVHRAILGSLERFIGVLTEHFAGAFPTW---IVPVQARLLTVT--- 546

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D       +L   G  V  D   E++G +   A L   P  ++VG K V    V +
Sbjct: 547 DAQNDFAMGARDQLVAAGLRVEADTRNEKLGYKVREAQLEKIPYILVVGDKEVEAGGVNV 606

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R        +L EV      
Sbjct: 607 RLRNGENLGLKTLAEVAEMIRA 628


>gi|256846083|ref|ZP_05551541.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256719642|gb|EEU33197.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 567

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 102/203 (50%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N    +       T     +   + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNVNYGRDYTADIVTDIRTAKVGENCITGGKLYSARGIECGQIFKLGDKYSKAMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+   +GK  Y+ MG YGIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V
Sbjct: 424 TYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEV 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EKIY  L +   D   DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K 
Sbjct: 484 QVSLAEKIYNELEEEKIDTMLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++   E+I        
Sbjct: 543 RRTGETLELPQNEIIAKIKELMK 565


>gi|227529941|ref|ZP_03959990.1| threonine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350126|gb|EEJ40417.1| threonine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 601

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 166/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   I + +   G   + 
Sbjct: 192 EAKERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGATIRRTIERYIIDREVADGYKHVY 249

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG ++ Y  +M    D  D  M+   P +      I++ HI+SYR+LP
Sbjct: 250 TPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLP 309

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +T +  +  + K+    + ++   
Sbjct: 310 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VTLDQIRSEFAKILRLIMDVYKDF 368

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + + + D M     S      D ++L+  
Sbjct: 369 DITDYSFRLSLR--------------DPKNVKKYYANDEMWEKSQSMLKKAMDDLNLD-- 412

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         T+ G DGK
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYVGQDGK 464

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   +    +  ++
Sbjct: 465 EHQPVMIHRGVVGTMERFIAYLTEIYKGAFPTW---LAPEQVHIIPVN--EDAHGEYADE 519

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++      V  D   E++G +   +     P  ++VG    +++ V ++      + 
Sbjct: 520 LAKKMKAANIRVVVDHRNEKMGYKIRESQTQKVPYTLVVGDDEKANNGVSVRKYGEKEQN 579

Query: 428 DMSLEEVINYASHRFSNN 445
           +MS +  +N      ++ 
Sbjct: 580 EMSQDAFMNEILADIASY 597


>gi|224062355|ref|XP_002195014.1| PREDICTED: similar to probable threonyl-tRNA synthetase 2,
           cytoplasmic [Taeniopygia guttata]
          Length = 719

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 155/444 (34%), Gaps = 44/444 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +  I +E   RD      +  L     H  S G   +LP G    + +   IR E
Sbjct: 302 KMMKEWEKIQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFLYNTLVDFIRGE 359

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R    E+  P + ++ LW  SG +  Y + M        +     P +      +F  
Sbjct: 360 YRRRNFTEVVSPNVFNSKLWEASGHWQHYSENMFSFEVEK-ETFAIKPMNCPGHCLMFAH 418

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F  T E  +        
Sbjct: 419 RPRSWRELPLRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTMEQIEEEIKDCLD 477

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     +   + P       E    A+        +        P +    
Sbjct: 478 FLKSVYAVFGFTF-QLHLSTRPENYLGDLEIWDHAEKQLQNSLNNFGEQWNLNPGDG--- 533

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    + +   ++    F    +++L   
Sbjct: 534 -----------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL--- 569

Query: 300 ATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+ G DG  K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +   
Sbjct: 570 -TYVGKDGDDKKRPVIIHRAILGSVERMIAILAENYGGK---WPFWLSPRQVMVVPVGPA 625

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +      +++  +  + G     D D    +  +   A L  +   ++VG K  +++ V
Sbjct: 626 SE---QYAQQVCDQFFEAGFMSDVDLDQSCTLNKKIRNAQLAQYNFILVVGEKEKANNAV 682

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            ++ R   +  ++S+   I     
Sbjct: 683 NVRTRDNKVHGEISVSSTIEKLKK 706


>gi|229552552|ref|ZP_04441277.1| threonine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258539925|ref|YP_003174424.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|229314104|gb|EEN80077.1| threonine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257151601|emb|CAR90573.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 657

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 167/437 (38%), Gaps = 37/437 (8%)

Query: 16  RDAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           ++A    H+++ R   +     +   G+  W+P G      +   I +++   G   +  
Sbjct: 234 KEAAERDHRVIGRDLDLFFVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYEHVYT 293

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPF 130
           P L + DL+  SG +D Y ++M    D  D  M+   P +      I+  HI+SYR LP 
Sbjct: 294 PVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPL 353

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    
Sbjct: 354 RIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFKKILRLIMDVYEDFN 412

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +     R                  D   T+ +   D M     S      D + L+   
Sbjct: 413 ITDYSFRLSYR--------------DPKNTEKYFDDDEMWTRSQSMLKGAMDDLHLD--Y 456

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            +     A      + +   +L  ++ +S   ++    F    +++L    T+ G DG++
Sbjct: 457 YEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----TYVGKDGEE 508

Query: 310 HYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H   M   G +G M    A +   + G    W   +AP +  LI +   + +  D   +I
Sbjct: 509 HRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPTQAVLIPVN--NDLHLDYVNRI 563

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++       E+
Sbjct: 564 KRQMQAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDEHTEE 623

Query: 429 MSLEEVINYASHRFSNN 445
            +    I+       N 
Sbjct: 624 EAGNMFIDAMVAEVKNY 640


>gi|303251144|ref|ZP_07337328.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307253514|ref|ZP_07535384.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649995|gb|EFL80167.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306859015|gb|EFM91058.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 571

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/204 (36%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGRHYFNVNWERDVAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
           E K+R TG ++ ++ ++++ +   
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKE 567


>gi|227890560|ref|ZP_04008365.1| threonyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867498|gb|EEJ74919.1| threonyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 649

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 240 EARERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEVAWGFQHVY 297

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + +L+ +SG +D Y ++M    D  D  M+   P +      ++  H +SYR LP
Sbjct: 298 TPVLANLNLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHKRSYRELP 357

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D + F + P+  +     +      +++  
Sbjct: 358 LRIAELGMMHRYEKSGALTGLSRVREMTLNDGHDF-IEPDHIEDEIKTLIKLMTEVYNDF 416

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S+     D +     
Sbjct: 417 DITDYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQSKLKAAMDDMG--LE 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + GADG+
Sbjct: 461 YFEAEGEAAFYGPKIDVQTKTALGGEETLSTIQLD----FLLPERF----DLKYIGADGE 512

Query: 309 DHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   GI +      A +   + G    W   +AP ++ +I +K  + +  D    
Sbjct: 513 EHRPVMVHRGIVSTMERFTAYLTEMYKGAFPTW---LAPHQVDIIPVK--NDLHMDYVND 567

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + ++L   G  V  DD  E++G +   A +   P  +++G + VS+  V ++        
Sbjct: 568 LSSKLRAHGIRVTVDDRNEKMGYKIRQAQVNKIPYTLVIGDEEVSNGTVTVRKYGEEKTN 627

Query: 428 DMSLEEVINYASHRFSNN 445
            M+  E  N       N 
Sbjct: 628 TMTKAEFKNLLFEDIENY 645


>gi|53712976|ref|YP_098968.1| threonyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60681188|ref|YP_211332.1| threonyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|253563046|ref|ZP_04840503.1| threonyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265763073|ref|ZP_06091641.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|73919767|sp|Q5LEQ6|SYT_BACFN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919768|sp|Q64VP2|SYT_BACFR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52215841|dbj|BAD48434.1| threonyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60492622|emb|CAH07394.1| putative threonyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|251946822|gb|EES87104.1| threonyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263255681|gb|EEZ27027.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301162677|emb|CBW22224.1| putative threonyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 646

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 157/456 (34%), Gaps = 53/456 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAII 57
           +    +L +++E    A+   H+ + +   +        KG+  WLP G      +   +
Sbjct: 226 KMLDEYLALMEE----AKKRDHRKIGKEMQLFMFSDTVGKGLPMWLPKGTALRLRLQDFL 281

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMT 115
           R  Q R    E+  P + +  L+V SG Y  YGK+  +        +     P +     
Sbjct: 282 RRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHC 341

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +I+++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  +
Sbjct: 342 EIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKGEF 400

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            ++      +F  +   +   +                  D    + +   D        
Sbjct: 401 LRVMDIISIVFRSMDFDNFEAQISLR--------------DKVNREKYIGSDENWEKAEQ 446

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-- 292
              +  +                       E    +    K        +G  +  GT  
Sbjct: 447 AIIEACEEKG---------------LKAKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQ 491

Query: 293 -KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   + P +
Sbjct: 492 VDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPEQ 548

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + ++ I    +   +  EK+   L         DD  E+IG +    ++   P  +IVG 
Sbjct: 549 VVILPI---SEKFNEYAEKVKTYLKMKEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGE 605

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           K   + +V ++ +  G +  M  EE     +    N
Sbjct: 606 KEAENGEVSVRRQGEGDKGTMKFEEFGEILNEEVQN 641


>gi|33594237|ref|NP_881881.1| prolyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|81836185|sp|Q7VTZ8|SYP_BORPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33564312|emb|CAE43613.1| prolyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|332383651|gb|AEE68498.1| prolyl-tRNA synthetase [Bordetella pertussis CS]
          Length = 576

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/223 (54%), Positives = 160/223 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  
Sbjct: 181 YQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIVY 223



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D     +   +        +D+ N    D  P+ K      RGIEVGH+F+ GT
Sbjct: 363 CGANREDYHYQGANWGRDLPEPELVADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGT 422

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + ATF   +GK   +QMG YGIG  R+V A IE +HD +GIIWP ++AP+++ + 
Sbjct: 423 KYSEALKATFLDDNGKPAVLQMGCYGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVIC 482

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  RD    +Y  L   G DV  DD   + G  FA  +L+G PL+V VG + +
Sbjct: 483 PVGWGKSETVRDTALALYEALRARGVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGL 542

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++  VE++ R       + +++ +     + 
Sbjct: 543 NEGVVELQARREAEAAKVPVDQALAQTLAKL 573


>gi|33603207|ref|NP_890767.1| prolyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|81836865|sp|Q7WFN9|SYP_BORBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33568838|emb|CAE34596.1| prolyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 576

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/223 (54%), Positives = 160/223 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  
Sbjct: 181 YQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIVY 223



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D     +   +        +D+ N    D  P+ K      RGIEVGH+F+ GT
Sbjct: 363 CGANREDYHYQGANWARDLPEPELVADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGT 422

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + ATF   +GK   +QMG YGIG  R+V A IE +HD +GIIWP ++AP+++ + 
Sbjct: 423 KYSEALKATFLDDNGKPAVLQMGCYGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVIC 482

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  RD    +Y  L   G DV  DD   + G  FA  +L+G PL+V VG + +
Sbjct: 483 PVGWGKSETVRDTALALYEALRARGVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGL 542

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++  VE++ R       + +++ +     + 
Sbjct: 543 NEGVVELQARREAEAAKVPVDQALAQTLAKL 573


>gi|56475942|ref|YP_157531.1| prolyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|81821206|sp|Q5P7T1|SYP_AZOSE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56311985|emb|CAI06630.1| prolyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 583

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+  L+E P DAE+ S KLMLR G I + + GIYS+LP+G + +  V  I+R+E
Sbjct: 1   MRASQYFISTLKEAPSDAEVVSQKLMLRAGFIRKVAAGIYSYLPIGLRVIRKVEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR++  G EMLR  DR+ +     PT EEV+TDI R 
Sbjct: 61  MNRAGALELTMPLVQPAELWDETGRWEQMGAEMLRFKDRHQRDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDVAAAGRSYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE  +   
Sbjct: 181 YCRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYC 224



 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGT 292
              +  D     +   +        +D+ N    D  P+ +      RGIEVGH+FY GT
Sbjct: 369 CGANEADFHLTGTNWGRDLPEPDLVADLRNIIEGDPSPDGRGRLAIQRGIEVGHVFYLGT 428

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF   +GK  + +MG YGIG  R++ A IE +HD +GIIWPD++APF++ + 
Sbjct: 429 KYSQSMNATFLDENGKPKHFEMGCYGIGVTRILGAAIEQNHDARGIIWPDAIAPFRVVVC 488

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +        R    K+Y  L   G DV  DD  E+ G  FA  +L+G P +V++G + +
Sbjct: 489 PVGWGKSDAVRTEATKLYETLCAGGIDVILDDRDERPGVMFADWELIGVPHRVVIGDRGL 548

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D   E + R       + L E+  +   +  
Sbjct: 549 KDGMAEYQGRRDAEAAKIPLAELAAFVGSKLR 580


>gi|260103159|ref|ZP_05753396.1| threonine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083018|gb|EEW67138.1| threonine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 644

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD       L L    +  +   G+  W+P G      V   I + +   G   + 
Sbjct: 235 EIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVY 292

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +  Y  +M    D  D  M+   P +      IF+ HI+SYR+LP
Sbjct: 293 TPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLP 352

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++   
Sbjct: 353 LRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVV-LDQVQTEFAKILKLIMEVYKDF 411

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T  + + D M            D + L+ +
Sbjct: 412 DITDYYFRLSYR--------------DPKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYV 457

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + +   +L  ++ +S   ++      FG         T+ G DG+
Sbjct: 458 EA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPDRFG--------LTYVGKDGE 507

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  +I +   ++   +  EK
Sbjct: 508 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--NEAHGEYAEK 562

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L+K G  V  DD  E++G +   +     P  +++G + +   KV ++   T    
Sbjct: 563 VRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTDEEI 622

Query: 428 DMSLEEVINYASHRFSNN 445
             SL++ IN       + 
Sbjct: 623 SKSLDDFINEIDADVKSY 640


>gi|296329234|ref|ZP_06871735.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153590|gb|EFG94407.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 567

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 103/203 (50%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N   ++       T         + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNVNYDRDYTADIVTDIRKVRVGDNCITGGKLHSARGIECGQIFKLGDKYSKAMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+    GK  ++ MG YGIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V
Sbjct: 424 TYLDEKGKTQFMLMGCYGIGVTRTMAASIEQNNDENGIIWPVSIAPYIVDVIPANIKNEV 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EKIY  L +   DV  DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K 
Sbjct: 484 QVSLAEKIYNELQEEKIDVMLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++S  EVI        
Sbjct: 543 RRTGETLEVSQNEVIAKIKELMR 565


>gi|322515550|ref|ZP_08068532.1| proline--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322118393|gb|EFX90656.1| proline--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 571

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVEKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSESVQQFSEELYRSLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLVNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG +  ++ ++++ +      
Sbjct: 544 EYKNRRTGEKSMITKDQLLAFLKENVK 570


>gi|194335337|ref|YP_002017131.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693365|sp|B4SB93|SYT_PELPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194307814|gb|ACF42514.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 657

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 158/451 (35%), Gaps = 44/451 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  +  L+E  R D      +L L   +  +   G+  WLP G    + +   ++EE
Sbjct: 237 KLLKEHVARLEEAKRRDHRKLGAELELFM-LSPEVGSGLPIWLPKGAIIRNELETFLKEE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMT 115
           Q + G + +  P + + +L+  SG Y  Y          +D+       +  P +     
Sbjct: 296 QRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEEGKQEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +   P+      
Sbjct: 356 LIYSSKMRSYRDLPLRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIY-CRPDQLVDEI 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                    +F  LG   +  R                + D      +     +      
Sbjct: 415 CSAIELTQFVFGTLGFSEVQTRLS--------------MHDPENQAKYGGTAEVWEQAEK 460

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +  +  D + ++  +    A +         +             R  ++G +      Y
Sbjct: 461 DVQEAADRMGIDYFIGVGEASFYGPKIDFIVRD---------ALGRKWQLGTV---QVDY 508

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +P     T+ G+DG+ H  V +     G+M     V+     G   +W   +AP +  +
Sbjct: 509 VMPERFDLTYTGSDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLW---LAPVQAVV 565

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  + ++  L   G     D   E+IG +   A++   P  +++G K  
Sbjct: 566 LPIA---EDVLDYAKSVHQALLAAGIRAELDTRSEKIGKKIRDAEVSKIPCMIVIGQKEQ 622

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +V ++    G     S+  +I       
Sbjct: 623 ESGEVSLRRHRIGDEGRFSVSGLIEKLKTEI 653


>gi|126735278|ref|ZP_01751024.1| threonyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126715833|gb|EBA12698.1| threonyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 648

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 142/444 (31%), Gaps = 49/444 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 KAHLHMLEE----AAKRDHRKLGREMNLFHMQEEAPGQVFWHPNGWTVYTELQDYVRRKQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
                 E++ P +    LW  SG +D Y + M  +    + A         P +      
Sbjct: 290 RAGDYREINTPQVVDRKLWEASGHWDKYHEHMFVVEVEEEHAKEKAINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   D + F  T E  +    
Sbjct: 350 VFNQGLKSYRDLPLRLAEFGSCARYEPSGALHGIMRVRGFTQDDGHIF-CTEEQIETECA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       I+  LG +   +   + P     S E     +        S        P +
Sbjct: 409 RFINFLADIYKDLGFEDFEIAFATRPEKRVGSDESWDHVEGALEAAIKSTGRDFRLEPGD 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G  F       
Sbjct: 469 GAFYGPKLDFYLTD---------------------------ALGRTWQCGT-FQVDPNLP 500

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+ G DG K     +    +G+      ++   H GK   W   +AP ++ +  I
Sbjct: 501 ERLGATYIGQDGSKHRPFMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVATI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      D   ++   L  VG     D   E+I  +     +   P+ + +G++ V + 
Sbjct: 558 VSD---ADDYAMEVVNALKAVGVRAEADLRNEKINFKVREHSVGKVPVILALGAREVEEK 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
            V  +          SL E++   
Sbjct: 615 TVTARRLGENKTSVTSLTEIVAEL 638


>gi|152996360|ref|YP_001341195.1| prolyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083502|sp|A6VXT1|SYP_MARMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150837284|gb|ABR71260.1| prolyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 574

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/225 (50%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L++ P DA + SH+LM+R GMI Q SKG+Y+WLP G K    +  I+R+E
Sbjct: 1   MRASNYLFSTLRDAPTDAVVTSHQLMIRAGMIRQVSKGLYTWLPTGLKVFRKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G++E+ +P +Q A+LW E+GR+  YG E+LRL DR+ +    GPTHEEV+T++ R+
Sbjct: 61  MEKAGSLEVMMPGVQPAELWQETGRWQKYGPELLRLQDRHGREYCLGPTHEEVITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF MKDAYSF +  E  + +Y+ M  +
Sbjct: 121 ELTSYKQLPMNFFQIQTKFRDEVRPRFGVMRSREFCMKDAYSFHVGAESLQETYDIMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F R+GL   P+RA++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YCNVFDRIGLNYRPVRADTGSIGGAYSHEFHVLADSGEDDIAFSD 225



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 213 LADTGETQVFC--SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           LA+ G   +    +    DF   +   D+        +  +        +D+ N    D 
Sbjct: 344 LAEKGIRVIADRSAAVMSDFCAGANKDDYH----FTGLNWERDCAEFEVADIRNVVEGDP 399

Query: 271 LPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            P+ +      RGIEVGHIF  G +Y+  + AT    +GK   + MG YGIG  R+VAA 
Sbjct: 400 SPDGQGTIVIKRGIEVGHIFQLGQQYAEALKATVLDENGKAQVMHMGCYGIGVSRIVAAA 459

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           IE + D KGI+WP+S+APF I+++ +     +  R  C+++YA L   G DV  DD  E+
Sbjct: 460 IEQNFDEKGILWPESIAPFDIAIVAMNYDKSEAVRTECDRLYAELKAKGLDVLLDDRKER 519

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G +FA  +LLG P +++VG K +    +E K+R  G  ED+++ + + +   +
Sbjct: 520 PGVKFADCELLGIPHRLVVGDKGLEKGTLEYKYRKAGDNEDIAIADAVEFILSK 573


>gi|328464763|gb|EGF36081.1| threonyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 644

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD       L L    +  +   G+  W+P G      V   I + +   G   + 
Sbjct: 235 EIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVY 292

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +  Y  +M    D  D  M+   P +      IF+ HI+SYR+LP
Sbjct: 293 TPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLP 352

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++   
Sbjct: 353 LRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVV-LDQVQTEFAKILKLIMEVYKDF 411

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T  + + D M            D + L+ +
Sbjct: 412 DITDYYFRLSYR--------------DPKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYV 457

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + +   +L  ++ +S   ++      FG         T+ G DG+
Sbjct: 458 EA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPDRFG--------LTYVGKDGE 507

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  +I +   ++   +  EK
Sbjct: 508 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--NEAHGEYAEK 562

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L+K G  V  DD  E++G +   +     P  +++G + +   KV ++   T    
Sbjct: 563 VRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTDEEI 622

Query: 428 DMSLEEVINYASHRFSNN 445
             SL++ IN       + 
Sbjct: 623 SKSLDDFINEIDADVKSY 640


>gi|331701570|ref|YP_004398529.1| threonyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128913|gb|AEB73466.1| threonyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 648

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 164/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           + + RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 238 EAHERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIVDKEVANGYQHVY 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+ +SG +D Y ++M    D  D + +   P +      I+  HI+SYR LP
Sbjct: 296 TPVLANLDLYKQSGHWDHYREDMFPPMDMGDGEELELRPMNCPSHIQIYNHHIRSYRELP 355

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  +  +    + ++H  
Sbjct: 356 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIQEEFKNILNLMVEVYHDF 414

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     +      D + L+ +
Sbjct: 415 DINDYTFRLSYR--------------DPKNTEKYFDDDEMWTRAQTMLKGAMDEMGLDYV 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + G DGK
Sbjct: 461 --EAEGEAAFYGPKLDVQTKTALGNEETLSTIQLD----FMLPERF----DLHYIGEDGK 510

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ + M    A +   + G    W   +AP ++ +I +        D  +K
Sbjct: 511 QHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPHQVKIIPVS--QDKHLDYAKK 565

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  +L  +      D   E++G     A     P  ++VG + VS + V ++       +
Sbjct: 566 INDQLRALKIRSSVDTRAEKMGYLIRDAQTHKIPYTLVVGDEEVSGNSVSVRKYGEQDTQ 625

Query: 428 DMSLEEVINYASHRFSNN 445
             S+ + I+  S   ++ 
Sbjct: 626 SESVPDFIDEVSKDIASY 643


>gi|89891844|ref|ZP_01203345.1| threonyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89515749|gb|EAS18550.1| threonyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 648

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 158/438 (36%), Gaps = 40/438 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 238 AKKRDHRKLGKELQLFT-FSQRVGQGLPLWLPKGAALRERLEDFLKKAQKKAGYEMVVSP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + S +L+V SG Y+ YG +  +      +D+  +  P +     +I++S   SYR+LP 
Sbjct: 297 HIGSKELYVTSGHYEKYGADSFQPIKTPSDDEEFLLKPMNCPHHCEIYKSSQWSYRDLPK 356

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F + PE     +  +    L +F  LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCM-PEQLDKEFKAVIDLVLYVFGSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                       +        +    +  +   D      I 
Sbjct: 416 FENFTAQVSIRD-------------PKKPEKYIGDTKNWEIAENAIISAAKDKGLDYVIE 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
           E   A Y    D   +              R  ++G I      Y+LP      +KGAD 
Sbjct: 463 EGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPERFDLWYKGADN 509

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    A++     G   +W     P + +++++    +   +  +
Sbjct: 510 ESHRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLM---PEQCTILSL---SEKYENYAK 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   L         D+  E +G +   A++   P  +IVG +   D  + ++       
Sbjct: 564 QVANSLENNEIRTTIDNRAETMGKKIREAEMNKLPYMLIVGEQEEKDGTISVRKHGGDDL 623

Query: 427 EDMSLEEVINYASHRFSN 444
             MS+E          ++
Sbjct: 624 GSMSVETFSQLIKDEIAS 641


>gi|90961470|ref|YP_535386.1| threonyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|122993083|sp|Q1WUN2|SYT_LACS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|90820664|gb|ABD99303.1| Threonyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 649

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 240 EARERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEVAWGFQHVY 297

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + +L+ +SG +D Y ++M    D  D  M+   P +      ++  H +SYR LP
Sbjct: 298 TPVLANLNLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHKRSYRELP 357

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D + F + P+  +     +      +++  
Sbjct: 358 LRIAELGMMHRYEKSGALTGLSRVREMTLNDGHDF-IEPDHIEDEIKTLIKLMTEVYNDF 416

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S+     D +     
Sbjct: 417 DITDYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQSKLKAAMDDMG--LE 460

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + GADG+
Sbjct: 461 YFEAEGEAAFYGPKIDVQTKTALGGEETLSTIQLD----FLLPERF----DLKYIGADGE 512

Query: 309 DHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   GI +      A +   + G    W   +AP ++ +I +K  + +  D    
Sbjct: 513 EHRPVMVHRGIVSTMERFTAYLTEMYKGAFPTW---LAPHQVDIIPVK--NDLHMDYVND 567

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + ++L   G  V  DD  E++G +   A +   P  +++G + VS+  V ++        
Sbjct: 568 LSSKLRAHGIRVTVDDRNEKMGYKIRQAQVNKIPYTLVIGDEEVSNGTVTVRKYGEEKTN 627

Query: 428 DMSLEEVINYASHRFSNN 445
            M+  E  N       N 
Sbjct: 628 TMTKAEFKNLLFEDIENY 645


>gi|313893443|ref|ZP_07827015.1| proline--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442084|gb|EFR60504.1| proline--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 572

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEIITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G + SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLEESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF+R GL   P+ A+SG IGG  +HEF+ +A+ GE  +          
Sbjct: 181 YTRIFNRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKCDYAA 231



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 6/244 (2%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+G   + EF ++ D    + +           +   D   +               A  
Sbjct: 334 PVGLQQTEEFTIVVDESVMETYNVCG------GANKKDAHYVNINPKRDFNVEDIIVAPI 387

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  +             A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG
Sbjct: 388 RLITKDDVCPTCGGSLEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIG 447

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA IE  HD  GIIWP S+APF+  ++ I A D+      E IY+ L + G DV 
Sbjct: 448 VSRTLAAAIEQYHDENGIIWPRSIAPFEAVIVPINAKDEALMSTSETIYSALQEAGVDVL 507

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R TG     +++ V    + 
Sbjct: 508 LDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKTGEALSCAIDSVATKVTE 567

Query: 441 RFSN 444
              N
Sbjct: 568 LLQN 571


>gi|330815470|ref|YP_004359175.1| Prolyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327367863|gb|AEA59219.1| Prolyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 578

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 167/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRIKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDQAGLKESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+R+F R+GL+   + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRVFTRIGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 11/226 (4%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N +  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADLRNVQKGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M +TF    GK   ++MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSKAMGSTFLDEGGKPQPMEMGCYGIGITRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     +  R+A ++++A L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSEAVRNAADQLHADLLAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRFS 443
            ++++G + + D K+E + R       +  E     VI       +
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDTEASLLPAEGAALTVIEKVREALA 577


>gi|255008477|ref|ZP_05280603.1| putative threonyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313146205|ref|ZP_07808398.1| threonine-tRNA ligase [Bacteroides fragilis 3_1_12]
 gi|313134972|gb|EFR52332.1| threonine-tRNA ligase [Bacteroides fragilis 3_1_12]
          Length = 646

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 160/463 (34%), Gaps = 67/463 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAII 57
           +    +L +++E    A+   H+ + +   +        KG+  WLP G      +   +
Sbjct: 226 KMLDEYLALMEE----AKKRDHRKIGKEMQLFMFSDTVGKGLPMWLPKGTALRLRLQDFL 281

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMT 115
           R  Q R    E+  P + +  L+V SG Y  YGK+  +        +     P +     
Sbjct: 282 RRIQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHC 341

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +I+++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  +
Sbjct: 342 EIYKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKGEF 400

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDF 227
            ++      +F  +   +   +            IG D + E        E  +  + + 
Sbjct: 401 LRVMDIISIVFRSMDFTNFEAQISLRDKVNREKYIGSDENWE------KAEQAIIEACEE 454

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                                                E    +    K        +G  
Sbjct: 455 KGLKAK------------------------------IEYGEAAFYGPKLDFMVKDAIGRR 484

Query: 288 FYFGT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +  GT    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W 
Sbjct: 485 WQLGTIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW- 543

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             + P ++ ++ I    +   +  EK+   L         DD  E+IG +    ++   P
Sbjct: 544 --LTPEQVVILPI---SEKFNEYAEKVKTYLKTKEIRAIVDDRNEKIGRKIRDNEMKRIP 598

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +IVG K   + +V ++ +  G +  M  E+     +    N
Sbjct: 599 YMLIVGEKEAENGEVSVRRQGEGDKGTMKFEDFGEILNEEVQN 641


>gi|90417103|ref|ZP_01225031.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90331119|gb|EAS46375.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 574

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E+P DAE+ SH+LMLR GMI + + G+YSWLPLG +    V AI+R+E
Sbjct: 1   MRASQYLISTKKESPADAEVISHQLMLRAGMIRKVASGLYSWLPLGLRVFRKVEAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA+E+ +P +Q ADLW ESGR+  +G E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDRSGALEIMMPVVQPADLWTESGRWGQFGPELLRIKDRHGREFCLGPTHEEVVTDIIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFGVMR+REF MKDAYSF +     + +Y+ M+ +
Sbjct: 121 EIRSYKQLPANFYQIQTKFRDERRPRFGVMRTREFCMKDAYSFHVDSASLQETYDLMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A++G IGG +SHEF VLAD+GE  +  S +     
Sbjct: 181 YSAIFDRTGLVYRAVLADTGSIGGSVSHEFHVLADSGEDAIVFSSESDYAA 231



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 117/208 (56%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D   L  +  Q        +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 367 DGYHLTGVNWQRDCGEFTIADIRNVVAGDPSPDGRGVLEIKRGIEVGHIFQLGTKYSEAM 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            AT    +GKD  + MG YGIG  R+VAA IE +HD  GIIWP+S+APF+++++ I  H 
Sbjct: 427 KATVLDENGKDRAMSMGCYGIGVSRIVAAAIEQNHDDNGIIWPESIAPFQVAIVPINMHK 486

Query: 358 DQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   + C+ +Y++L   G +V + D+   ++G   A  +L+G P ++++G + ++D  V
Sbjct: 487 SERVAETCQTLYSKLVSAGYEVLFMDEPKARLGGMLADIELIGIPHRIVIGDRGLADGNV 546

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E ++R     + ++++++ ++ +   + 
Sbjct: 547 EYRNRREHENQHIAMDKLDDFIAENIAK 574


>gi|206561773|ref|YP_002232538.1| prolyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|226699125|sp|B4E5W6|SYP_BURCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|198037815|emb|CAR53759.1| prolyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 578

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFSRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPDVADVRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D +GIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGITRILGAAIEQNFDDRGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +      + R+  +K+YA L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDLVRETADKLYAELVAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       +  +      + +  
Sbjct: 532 HRLVIGERGLKEGKIEYQGRRDAEATLLPADTAAATVAEKIR 573


>gi|189499158|ref|YP_001958628.1| threonyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|238692225|sp|B3EKG9|SYT_CHLPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189494599|gb|ACE03147.1| threonyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 659

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 164/450 (36%), Gaps = 43/450 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++   + +   RD      +L L   +      G+  WLP G      + A ++EEQ + 
Sbjct: 243 QHLARLEEAKKRDHRKLGAELELFM-LSQDVGSGLPIWLPKGAIIRSELEAFLKEEQRKR 301

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADR--NDKAMIYGPTHEEVMTDIFR 119
           G + +  P + + DL+  SG Y  Y           D    ++  +  P +      I+ 
Sbjct: 302 GYVPVYTPHIGNIDLYKRSGHYPYYSDSQFPPLTYKDDLGREEQYLLKPMNCPHHHLIYS 361

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S ++SYR+LP    +    +R E      G++R+R F   D++ +   P+          
Sbjct: 362 SQLRSYRDLPIRMAEFGTVYRHEQSGELNGLIRARGFTQDDSHIY-CRPDQLVDEICAAI 420

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                +F  LG   I +R                L D      +   + +      +  +
Sbjct: 421 DLTKFVFTTLGFDDIEVRLS--------------LHDPENQGKYGGTEEVWKQAEKDVRE 466

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
             D + +N ++    A +         +             R  ++G +      Y +P 
Sbjct: 467 AADRMEINYVIGIGEASFYGPKIDFIVRD---------ALGRKWQLGTV---QVDYVMPE 514

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               ++ G+DGK H  V +     G+M     V+     G   +W   +AP +++++ I 
Sbjct: 515 RFDLSYIGSDGKPHRPVIIHRAPFGSMERFIGVLIEHTAGNFPLW---LAPVQVAVLPIT 571

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      E+++  L   G     D   E+IG +   A++   P  VI+G K     +
Sbjct: 572 ---EEVHAYAERVHQMLIDNGIRADLDIRSEKIGKKIREAEVGKIPYMVIIGQKEADSEE 628

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + ++    G +  ++L+ + +       N 
Sbjct: 629 ISLRRHRKGDQGSLTLQALKDMLVKEVRNK 658


>gi|126321714|ref|XP_001373481.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 723

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 154/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   ++P G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFMPKGAYIYNTLVEFIRNEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIYNSKLWLTSGHWQHYSENMFSFEVEK-EIFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F  T E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTMEQIEEEIKNCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G     +   + P       E    A+                 P +      
Sbjct: 484 RTVYNVFGFSF-KLNLSTRPEKFLGDVEIWNQAEKQLESSLNEFGEKWELNPGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIIHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ 
Sbjct: 631 DEYAQKVQQQFHNANLMTDSDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I          
Sbjct: 691 RDNKVHGERTVSETIERLQQLKQTR 715


>gi|195336930|ref|XP_002035086.1| GM14112 [Drosophila sechellia]
 gi|194128179|gb|EDW50222.1| GM14112 [Drosophila sechellia]
          Length = 458

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 132/456 (28%), Positives = 210/456 (46%), Gaps = 44/456 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPSLI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQSNMQQAGGQKITLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 TDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T +  +    SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +            
Sbjct: 182 YSVVNSAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSSVGEDNLLQCSSCGFA--- 238

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F    K
Sbjct: 239 -----------------------GNSEVVKAPASCPSCNSSDLKEVRGVEVAHTFLLEDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+   LI 
Sbjct: 276 YSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELHWPKLLAPYDACLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
            K   +    A       L  VG      ++  DD  E  IG +   A  LG PL ++VG
Sbjct: 336 PKQGSKEQPQAEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVG 395

Query: 408 SKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +K       K+E+     G   ++   E +   +  
Sbjct: 396 AKSARQDSPKLEVHT-SKGETYELDFSETLKLVAEH 430


>gi|325478873|gb|EGC81983.1| threonine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 640

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 156/443 (35%), Gaps = 42/443 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E  ++ E   H+ + R       H+   G   + P G   ++ +     +  N  
Sbjct: 229 LEEYEELQKEIEKRDHRKIGREMNLFAFHEEGPGFPFFHPNGMILMNELLGWWTDVLNEN 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW  SG +D Y + M    + + +A    P +       + ++  S
Sbjct: 289 GYGEIKTPLILNEALWHRSGHWDHYKENMY-FTEIDGEAYAVKPMNCPGSVLTYAANQHS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R EL     G+ R R F   DA+ +  TP   K    +M      
Sbjct: 348 YRDLPIRLAEYGQVHRHELSGTLHGLFRVRTFTQDDAHVY-CTPNQIKEEVYRMIDLADL 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P       +    A+    +    +       P +        
Sbjct: 407 LYSTFGFKY-TIELSTRPDDFMGDIKDWDFAEEQLKKALEERGIEYEINPGDG------- 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  L D+     +     ++    F     +      T+ 
Sbjct: 459 -------------AFYGPKIDFHLLDAAKREWQCGTIQLD----FQLPQNF----DLTYI 497

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +G K   V +    +G++     V+     G+  +W   + P ++ +I +        
Sbjct: 498 DENGEKQRPVMLHRALLGSIERFIGVLTEHFAGRFPLW---LNPQQVEIIPV---SDKFI 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  E++  ++ + G  V  D   E +G +   A L+     ++VG K  +  K+ +++R 
Sbjct: 552 DYAEELKQKIKEAGFRVNIDYRNEGVGYKIRQAQLMRTNYMLVVGEKEETSGKLTVRNRD 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                D+SL+E I   S   ++ 
Sbjct: 612 GEETPDVSLDEFIEKISEEKASK 634


>gi|83746821|ref|ZP_00943869.1| Prolyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83726590|gb|EAP73720.1| Prolyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 626

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 53  MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 112

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 113 MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 172

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 173 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 232

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +  S
Sbjct: 233 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYS 276



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 7/200 (3%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEV 284
             DF   +   DF        +      P A  +D+ N    D  P+ K      RGIEV
Sbjct: 410 MSDFVCGANEEDFH----YTGVNWGRDLPEAEVADLRNVVEGDPSPDGKGSLAICRGIEV 465

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GT+YS  MSATF   +GK   + MG YGIG  R++ A IE ++D +GIIWP S+
Sbjct: 466 GHVFMLGTRYSESMSATFLDENGKTQPMVMGCYGIGITRILGAAIEQNYDARGIIWPVSI 525

Query: 345 APFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF++ +  +     +  R   ++++A L+  G DV  DD GE+ G  FA  +L+G P +
Sbjct: 526 APFEVVICPVGYDRSEAVRAEADRLHAELAAAGIDVILDDRGERPGVMFADWELIGVPFR 585

Query: 404 VIVGSKFVSDSKVEIKHRLT 423
           V+VG + + + K+E++ R  
Sbjct: 586 VVVGERGLKEGKLELQGRRD 605


>gi|302871195|ref|YP_003839831.1| prolyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574054|gb|ADL41845.1| prolyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 572

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 153/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAIFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K      
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAA 231



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +  TD+   I   ++ +     +A   ++  + L       K    RGIEV
Sbjct: 349 KYLKNFVVGANKTDYH--IKNVNLSDFKVTRFADLRNITQDDLCPKCRSQKVTIERGIEV 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKY+      +    G+  ++ MG YGIG  R  AA+IE  HD  GIIWP +V
Sbjct: 407 GHIFKLGTKYTEAFGCVYTDEKGEKKFMIMGCYGIGINRTAAAIIEQMHDEDGIIWPITV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +   D+       +IY  L K G +V  DD  E+ G +F  ADL+G P +V
Sbjct: 467 APYEVIVVPVNVKDENQSKIAFEIYENLQKNGVEVLIDDRDERAGVKFKDADLIGIPFRV 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            VG K VS+ K+EI++R T    +  ++  + +  +     + 
Sbjct: 527 TVGKK-VSEGKIEIRNRRTKESFEFEIDNAVEFIINLIKQEKA 568


>gi|300702990|ref|YP_003744592.1| proline--tRNA ligase [Ralstonia solanacearum CFBP2957]
 gi|299070653|emb|CBJ41948.1| Proline--tRNA ligase [Ralstonia solanacearum CFBP2957]
          Length = 574

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +  S
Sbjct: 181 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYS 224



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 7/221 (3%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEV 284
             DF   +   DF        +      P A  +D+ N    D  P+ K      RGIEV
Sbjct: 358 MSDFVCGANEEDFH----YTGVNWGRDLPEAEVADLRNVVEGDPSPDGKGTLAICRGIEV 413

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GT+YS  MSATF   +GK   + MG YGIG  R++ A IE ++D +GIIWP S+
Sbjct: 414 GHVFMLGTRYSESMSATFLDENGKTQPMVMGCYGIGITRILGAAIEQNYDARGIIWPVSI 473

Query: 345 APFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF++ +  +     +  R   ++++A L+  G DV  DD GE+ G  FA  +L+G P +
Sbjct: 474 APFEVVICPVGYDRSEAVRAEADRLHAELAAAGIDVILDDRGERPGVMFADWELIGVPFR 533

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V+VG + + + K+E++ R       ++  +V+     R + 
Sbjct: 534 VVVGERGLKEGKLELQGRRDEAATAVAPADVLATLKSRLAQ 574


>gi|194206357|ref|XP_001491149.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 [Equus
           caballus]
          Length = 754

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 161/441 (36%), Gaps = 44/441 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 343 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHQRNFTE 402

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M    D         P +      +F    +S+R +
Sbjct: 403 VLSPNMYNSKLWEASGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREM 461

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 462 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 520

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P         I L D  E Q+  S      P                
Sbjct: 521 FGFSF-QLNLSTRPENFLGE---IGLWDEAEKQLQNSLMEFGKP---------------- 560

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             +      A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 561 -WKMNPGDGAFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 611

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K + V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 612 DDKKNPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 665

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++     + G     D D    +  +   A L  +   ++VG K  +++ V ++ R   
Sbjct: 666 LQVSNEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNVRTRDNK 725

Query: 425 IREDMSLEEVINYASHRFSNN 445
           I  ++S+   I+   H   + 
Sbjct: 726 IHGEISVTSAIDKLKHLKKSR 746


>gi|58337807|ref|YP_194392.1| threonyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227904456|ref|ZP_04022261.1| theronyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|73919799|sp|Q5FIW3|SYT_LACAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58255124|gb|AAV43361.1| theronyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227867831|gb|EEJ75252.1| theronyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 644

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 165/443 (37%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I + +   G
Sbjct: 228 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 288 YKHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + 
Sbjct: 348 YRDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VELDQVQSEFAKILKLIMD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M            D +
Sbjct: 407 VYRDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDL 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 453 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 502

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M     +G M    A +   + G    W   +AP +  +I +   ++   
Sbjct: 503 GKDGEEHRPVMVHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--NEAHG 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L+K G  V  DD  E++G +   +     P  +++G + + +  V ++   
Sbjct: 558 EYAEKVRQELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYG 617

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T      SL++ IN       + 
Sbjct: 618 TDEEISKSLDDFINEIDADVKSY 640


>gi|332187352|ref|ZP_08389090.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332012513|gb|EGI54580.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 664

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 161/455 (35%), Gaps = 48/455 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +++   + +   RD     +++ L    + Q + G   W P G +    + A +R   
Sbjct: 235 QLAEHLTRLEEAAKRDHRKLGNEMDLF--HLQQEAHGSVFWHPKGYRIWRELEAYMRRAI 292

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGP 108
           + TG  E+  P +  A  W +SG +  Y + M  + D              + + M   P
Sbjct: 293 DATGYREVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNTEDEGPLVSDDAQWMALKP 352

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      IFR  IKSYR+LP  FY+     R+E      G+MR R+F   DA+ F    
Sbjct: 353 MNCPAHVLIFRQGIKSYRDLPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CRE 411

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +              RI+   G     ++    P     + E   + D  E ++  +   
Sbjct: 412 DQIVEEVRAFCELADRIYKDFGFTY-SIKLALRPEKRFGTEE---MWDQAEEELRNAVVA 467

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     +           +       A                     R  +VG I
Sbjct: 468 AGLATEQYGWEELPGEGAFYAPKLEWHLTDA-------------------IGRTWQVGTI 508

Query: 288 FYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                     + A++ G DG+ H  + +     G+      ++   + G+  +W   +AP
Sbjct: 509 -QSDRVLPERLDASYIGEDGERHRPIMLHRAIFGSYERFIGILIEHYAGRFPVW---LAP 564

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +  +  I +         E+  A+L+  G  V  D   E+I  +     +   P+ ++V
Sbjct: 565 VQAVVATIVSD---ADGYAEEAAAKLAAAGIRVETDLRNEKINYKVREHSVAKVPVLLVV 621

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G +   + KV ++   +  +E M+L+E I      
Sbjct: 622 GKREAEEGKVAVRRLGSQAQEVMTLDEAIATLRGE 656


>gi|219113189|ref|XP_002186178.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583028|gb|ACI65648.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 684

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 165/442 (37%), Gaps = 41/442 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIRE 59
           ++ K +  +L+E   RD  +   KL L +  I +    G+  W P G K    +    ++
Sbjct: 255 QQLKQYKKMLEEAKKRDHRMLGKKLDLFS--IQEDAGGGLVFWHPKGSKVRRMIEDFWKD 312

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              + G   +  P + + DLW  SG +D Y  +M    D  ++     P +      +++
Sbjct: 313 AHIQDGYDVVYSPHIANIDLWKTSGHFDFYRADMFDQMDVENEQYQIKPMNCPFHCLMYK 372

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR+LPF + ++   +R E      G+MR R F   DA+ F L PE  +     + 
Sbjct: 373 DELRSYRDLPFRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCL-PEQLQDEIVGVL 431

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I  R G     +   + P     S E    A          K +           
Sbjct: 432 DLTETILSRFGFDKYDVMLSTRPEKSVGSDEIWDAATVALEGALKVKGWDYNVDEGGG-- 489

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + K+ D++    + S    +      FG +Y+   
Sbjct: 490 ------------------AFYGPKIDLKIRDAIGRQWQCSTVQCDFNLPERFGLEYASA- 530

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                  DG ++  + +     G++     ++  +  G   +W   +AP ++ L+ +   
Sbjct: 531 -------DGTRERPIMVHRAIFGSIERFFGILIENCSGDFPLW---LAPTQLKLLPVT-- 578

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                + C +I A+  K+G  +  D   E++  Q   A+    P+  +VG K +  + + 
Sbjct: 579 -DAVHEYCNEIAAKALKMGLRIEVDRGSERLAKQIRNAEQARIPVMAVVGMKEMESNSLA 637

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R  G      +E++++   
Sbjct: 638 VRSRKLGDLGSFEVEDLLSELK 659


>gi|94986656|ref|YP_594589.1| threonyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|122988800|sp|Q1MRV8|SYT_LAWIP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94730905|emb|CAJ54268.1| Threonyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 642

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 159/442 (35%), Gaps = 41/442 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E  R D      +L L        + G+  W P G      +   +R+E
Sbjct: 223 KLLKTYLTQLEEAKRRDHRKLGKELNLFEFH-EDIAPGMVFWQPNGMLLRTILEDFLRKE 281

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P L   +LW +SG Y +Y + M    +  +      P +      ++++
Sbjct: 282 HLKRGYQLVQGPQLLRRELWEKSGHYTNYKENMY-FTEIEEDVYGIKPMNCVSHMLLYKT 340

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H+ SYR LP  ++++ +  R E      G++R R+F   DA+   + PE  +    ++  
Sbjct: 341 HLHSYRELPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICM-PEQLEEEIIQVIT 399

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +          +   + P     S     LA +   Q                   
Sbjct: 400 FVRDLMSLFDFNYHIV-ISTRPEKSIGSDYAWELATSALIQA------------------ 440

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             +  +N          A      + K+ D++    ++S    +    F    ++     
Sbjct: 441 --VEKINLPYSINHGDGAFYGPKIDIKVTDAIGREWQLSTIQCD----FTLPERF----E 490

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DGK H  V +     G++     ++   + G    W   + P ++ ++ +    
Sbjct: 491 LEYVGQDGKRHQPVMIHRAIFGSIERFIGILTEHYAGAFPTW---LTPIQVKILTVT--- 544

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  + +Y++L  VG  V  D   E++G +   A L   P  +++G K +    V +
Sbjct: 545 DAQTPFAKHVYSQLQDVGIRVGLDIRNEKLGFKIREAQLAKIPYILVIGQKELELESVNV 604

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R        S+ E I    +
Sbjct: 605 RLRTGENIGMQSVTEFIKLVEN 626


>gi|92117217|ref|YP_576946.1| threonyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|91800111|gb|ABE62486.1| Ser-tRNA(Thr) hydrolase [Nitrobacter hamburgensis X14]
          Length = 681

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 145/452 (32%), Gaps = 45/452 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            S+  L    +   +AE   H+ + R        +   G+  W   G      + A +R 
Sbjct: 249 ASQQDLDAYLKQIEEAEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWTLFQEIIAYMRR 308

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVM 114
                   E++ P +    LW  SG ++ Y + M           + +     P +    
Sbjct: 309 RLAE-DYDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFAIKPMNCPGH 367

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR LP    +  +  R E      G+MR R F   DA+ F  T +     
Sbjct: 368 VLIFKHGLKSYRELPIRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEQQLADE 426

Query: 174 YNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
             K+    L  +   G +  + ++  + P     S      A++  T V           
Sbjct: 427 CLKINDLILSTYEDFGFEGELTVKLSTRPDKRVGSDAAWDHAESVMTAVL---------- 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                +     S N +         A      E +       +    R  + G       
Sbjct: 477 -----EQIKARSGNRVKTSINPGEGAFYGPKFEYVL------RDAIGREWQCGTT---QV 522

Query: 293 KYSLP--MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            ++LP    A +      K   V +     G++   A ++     G   +W   +AP + 
Sbjct: 523 DFNLPERFGAFYIDEHSNKVAPVMVHRAICGSLERFAGILIEHFAGHFPLW---LAPVQA 579

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  I +      D   ++ A   + G  +  D   E+I  +     L   P  ++VG K
Sbjct: 580 VVATITSD---ADDYAREVVAAARRAGLRIEIDLRNEKINYKVREHSLAKVPALLVVGKK 636

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                 V I+   +  +  +  +E I      
Sbjct: 637 EAESRSVSIRRLGSDGQTVLPTDEAIAALVEE 668


>gi|303232046|ref|ZP_07318749.1| proline--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513152|gb|EFL55191.1| proline--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 572

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AIIREE
Sbjct: 1   MLASKLYAPTLREVPSDADVVSQQLMLRAGFMRKVANGLYSFLPLGWRSIKKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRSGAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDVEYCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKD YSFD+    +  SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDGYSFDIDDAAADVSYKNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +          
Sbjct: 181 YSRIFTRCGLTFRPVEADSGAIGGSNTHEFMAIAEAGEADIIHCSACDYAA 231



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 6/244 (2%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+G   + +F ++ D    + +           +   D   I               A  
Sbjct: 334 PVGLKQTDDFAIVVDESVMETYNVCG------GANKADAHYININPKRDFNTEDIIVAPI 387

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  +        +    ++GIEVG +F  GTKYS  + AT+   +G+ + + MG YGIG
Sbjct: 388 RLITKDDVCPECHSPLEYSKGIEVGQVFKLGTKYSESLQATYLDQNGRPNAMVMGCYGIG 447

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA IE  HD  GI+WP ++APF++ ++ I A D+        IY  L     DV 
Sbjct: 448 VSRTLAAAIEQYHDENGIVWPRAIAPFEVVIVPINAKDEALMSTSTSIYDTLLNNKVDVL 507

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  ++ G +F  ADL+G+PL++ V    +  ++VEI+ R TG   +  ++EV +    
Sbjct: 508 LDDRKDRAGVKFKDADLIGYPLRITVSKNTLESNEVEIRVRKTGEAINCPIDEVSSKVQE 567

Query: 441 RFSN 444
             S 
Sbjct: 568 LLSQ 571


>gi|152981235|ref|YP_001354678.1| prolyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166980130|sp|A6T2D1|SYP_JANMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151281312|gb|ABR89722.1| prolyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 577

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKKIGSGIYTYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q A+LW E+GR+D  G E++R+ DR+ +     PT EEV+TD+ R+
Sbjct: 61  MNNAHAIELLMPLVQPAELWQETGRWDKMGAELMRVKDRHGREFAIQPTSEEVVTDVVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  MF +
Sbjct: 121 EIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDIDGLKKSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF+R GL+   + A++G IGG  SHEF V+ADTGE  +    +     
Sbjct: 181 YVKIFNRFGLQFRAVAADNGAIGGSGSHEFHVIADTGEDALVYCPNSDYAA 231



 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGI 282
            +  DF   +   DF        +      P A   D+ N    D  P+ K      RGI
Sbjct: 359 ANMHDFVCGANEVDFH----FTGVNWGRDLPEAQVFDIRNVVEGDPSPDGKGTLAIQRGI 414

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GT YS  M AT+   +GK   +QMG YGIG  R++ A IE + D KGIIWP 
Sbjct: 415 EVGHVFQLGTAYSESMKATYLDENGKPQLIQMGCYGIGVTRILGAAIEQNFDDKGIIWPT 474

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +     +  +   +K+Y  L   G DV  DD GE+ G+ FA  +L+G P
Sbjct: 475 ALAPFEVVLCPMGYDRSEGVKAETDKLYEALQAAGVDVILDDRGERPGAMFADWELIGVP 534

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++++G + + + K+E + R       ++LEE++ +   + +N
Sbjct: 535 HRIVIGDRGLKEGKLEYQGRRDAAATPVALEEMLGFVQAKLAN 577


>gi|303248736|ref|ZP_07334989.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302489901|gb|EFL49829.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 647

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 152/435 (34%), Gaps = 44/435 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      +L L +    +   G+  W P G+     +    R E  R 
Sbjct: 230 KYLRHLEEAKKRDHRKLGTQLDLFS-FSEEVGAGMPIWHPKGELIRTILEDFERREHLRR 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   +LW  SG YD+Y + M    + + +A    P +      I++S ++S
Sbjct: 289 GYQLVRGPLILRRELWERSGHYDNYRENMY-FTEIDGQAYGIKPMNCLSHMLIYKSRVRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  ++++ +  R E      G+MR R+F   DA+     P+        +      
Sbjct: 348 YRDLPQRYFELGVVHRHEKSGVLHGLMRVRQFTQDDAHIL-CRPDQLLDEITGVIKFVQD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G     +   + P     S E    A         S          +   +   I
Sbjct: 407 VVALFGFDY-EVDLSTRPEKSIGSDEDWDRATKALIDAMESLGLPYDINEGDGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
            +                             K    R  +   +      ++LP      
Sbjct: 466 DIKL---------------------------KDALERRWQCATV---QCDFTLPERFDLV 495

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ADG+    V +    +GA+     V+     G    W   ++P +  ++ +      
Sbjct: 496 YTDADGERKRPVMLHRVILGAVERFLGVLIEHTAGALPTW---LSPEQARILIVT---DA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++  E+  A+L++ G  V  D+  E++G +   A +   P  ++ G K      + ++ 
Sbjct: 550 QKEFAEEAKAKLAEAGIRVELDERNEKLGFKVREAQMEKVPYMLVAGDKEKELGGLNVRL 609

Query: 421 RLTGIREDMSLEEVI 435
           R        SL+E++
Sbjct: 610 RSGENLGVKSLDEIV 624


>gi|147899539|ref|NP_001087812.1| threonyl-tRNA synthetase [Xenopus laevis]
 gi|51895835|gb|AAH81263.1| MGC86352 protein [Xenopus laevis]
          Length = 721

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 155/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + +       H+ S G   +LP G    + +   IR+E  
Sbjct: 304 KMLKEWEKFQEEAKNRDHRKLGKEQELFFFHELSPGSCFFLPKGAYIYNQLIGFIRQEYR 363

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG +  Y + M        +     P +      +F    
Sbjct: 364 KRGFQEVVTPNVYNSKLWQTSGHWQHYSENMFSFEVEK-EIFALKPMNCPGHCLMFDHRP 422

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 423 RSWRELPMRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEEEIKSCLDFL 481

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G     +   + P       E    A+                 P +      
Sbjct: 482 RSVYNVFGFTF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWVLNPGDG----- 535

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 536 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 574

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +      C
Sbjct: 575 SHDGDDKKRPVIIHRAILGSVERMIAILTENFGGK---WPLWLSPQQVMVVPVGP---TC 628

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +++  +  + G     D D G  +  +   A L  +   ++VG K  +   V I+ 
Sbjct: 629 DEYAQQVREQFHRAGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASETVNIRT 688

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 689 RDNKVHGERTVTETIQRLLQLKESR 713


>gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300072496|gb|ADJ61895.1| prolyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
          Length = 575

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGAGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++  G E++R+ DR+ +     PT EEV+TD+ RS
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVKDRHGRDFAIQPTSEEVVTDVARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 121 ELRSYKQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVDGLKKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R GL+   + A++G IGG  SHEF V+A TGE  +   
Sbjct: 181 YVRIFTRFGLEFRAVAADNGAIGGSGSHEFHVVAATGEDALVYC 224



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF   +   DF               P    +D+ N    D+ P+ K      RGI
Sbjct: 357 ANMADFVCGANEADFH----YTGANWGRDLPEPLVADIRNVVEGDASPDGKGVLAIQRGI 412

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GT YS  M AT+    GK   + MG YGIG  R++ A IE + D +GIIWP 
Sbjct: 413 EVGHVFQLGTTYSEAMKATYLDEAGKPQPLVMGCYGIGVTRILGAAIEQNFDDRGIIWPT 472

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     +  +   +K+YA+LS+ G DV  DD GE+ G+ FA  +L+G P
Sbjct: 473 SIAPFEVVLCPMGYDRSEAVKTEIDKLYAQLSEAGVDVVLDDRGERPGAMFADWELIGVP 532

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +++VG + + D  +E + R       + L E + +   + +
Sbjct: 533 HRIVVGDRGLKDGNIEYQGRRDTEATQVPLAEALAFIQGKLA 574


>gi|16124719|ref|NP_419283.1| threonyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221233433|ref|YP_002515869.1| threonyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|22654137|sp|Q9AAX8|SYT_CAUCR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783515|sp|B8GZS7|SYT_CAUCN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13421637|gb|AAK22451.1| threonyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220962605|gb|ACL93961.1| threonyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 655

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 144/431 (33%), Gaps = 44/431 (10%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + +T     I +  KG+  W P G      +   +R   +  G  E+  P 
Sbjct: 243 EAEKRDHRKLGKTMDLFHIQEEGKGMVFWHPKGWALYRVLEDYMRRRLDAAGYKEVKTPQ 302

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW +SG  + +G  M        + +   P +      IF    KSYR LP    
Sbjct: 303 ILDRSLWEKSGHAEKFGHAMFMCESAEGEVLAVKPMNCPGHIQIFNVGQKSYRELPLRMA 362

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R E      G+MR R F   DA+ F    E       +       +++ LG+  
Sbjct: 363 EFGACHRYEPSGAMHGIMRVRAFTQDDAHIF-CREEQVTEESARFIELLRSVYNDLGMTL 421

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              +  + P     + E    A+        +        P E   +   +  +      
Sbjct: 422 ADTKFSTRPELRAGTDETWDKAEAALAAAAEAAGETLTLQPGEGAFYGPKLEFSL----- 476

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KD 309
                                 K    R  + G        + LP  + A +   DG K 
Sbjct: 477 ----------------------KDAIGRVWQCGT---LQLDFVLPERLDAEYVSEDGSKK 511

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G+      ++  +  G   +W   +AP ++ +  I +      D   ++ 
Sbjct: 512 RPVMLHRAILGSFERFIGILLENFAGALPVW---LAPTQVVVATITSD---ADDYAREVV 565

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L+K+G     D   E+I  +     L   P+  +VG K     ++ ++      +  +
Sbjct: 566 EKLTKLGMRAELDLRNEKINYKIREHSLAKVPVIAVVGRKEAETGQLALRRLGGEGQSVL 625

Query: 430 SLEEVINYASH 440
           SLEE +     
Sbjct: 626 SLEEALRVLKS 636


>gi|227892831|ref|ZP_04010636.1| theronyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227865333|gb|EEJ72754.1| theronyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 645

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 162/442 (36%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      V   I + +   G 
Sbjct: 229 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y  +M    D  D  M+   P +      IF+ HI+SY
Sbjct: 289 DHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + +
Sbjct: 349 RDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQDEFAKILKLIMDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D   T+ + + D M            D + 
Sbjct: 408 YKDFDITDYYFRLSYR--------------DPKNTEKYFANDEMWERSQKMLKGAMDDLG 453

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++      FG         T+ G
Sbjct: 454 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYVG 503

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++H   M   G +G M    A +   + G    W   +AP +  +I +   ++   +
Sbjct: 504 QDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPIQAEIIPVN--NEAHGE 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L+K G     DD  E++G +   +     P  +++G   +   KV ++   T
Sbjct: 559 YAEKVRQELAKRGFRAEVDDRNEKMGYKIRESQTQKVPYTLVLGDDEMKSGKVNVRRYGT 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 SL++ I        + 
Sbjct: 619 DEEISKSLDDFIKEIDADVKSY 640


>gi|118095671|ref|XP_413774.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 903

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 159/442 (35%), Gaps = 47/442 (10%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++E  +   +A    H+ + +       H  S G   +LP G    + +   IREE +
Sbjct: 486 KMMKEWEKFQEEARNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFLYNTLTDFIREEYH 545

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R    E+  P + ++ LW  SG +  Y + M    +   +     P +      +F    
Sbjct: 546 RRNFTEVVSPNIFNSKLWETSGHWQHYSENMFSF-EIEKETFALKPMNCPGHCLMFAHRP 604

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R +P       +  R+EL     G+ R R F   DA+ +  T E  +          
Sbjct: 605 RSWREMPLRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIY-CTIEQIEEEIKGCLDFL 663

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+        +        P +      
Sbjct: 664 KSVYSIFGFTF-QLHLSTRPENYLGELEIWDHAEKQLQNSLDNFGVQWTLNPGDG----- 717

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D+L    + +   ++    F    +++L    T
Sbjct: 718 ---------------AFYGPKIDIKIKDALGRYHQCATIQLD----FQLPIRFNL----T 754

Query: 302 FKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG  K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +    +
Sbjct: 755 YVGKDGDDKKRPVIIHRAVLGSVERMIAILAENYGGK---WPFWLSPRQVMVVPVGPTSE 811

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +  +++ +   + G     D D    +  +   A L  +   ++VG K  ++  V +
Sbjct: 812 ---EYAQQVCSEFFEAGFMSDVDLDQSCTLNKKIRNAQLAQYNFILVVGEKEKANHAVNV 868

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R   +  ++S+   I     
Sbjct: 869 RTRDNKVHGEISVSSAIEKLKK 890


>gi|224090286|ref|XP_002193839.1| PREDICTED: threonyl-tRNA synthetase [Taeniopygia guttata]
          Length = 711

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 152/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 294 KMLKEWEKFQEEAKSRDHRKIGRDQELFFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYR 353

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y   M        +     P +      +F    
Sbjct: 354 KRGFQEVVTPNVFNSKLWMTSGHWQHYSDNMFSFEVEK-EIFALKPMNCPGHCLMFDHRP 412

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 413 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEEEIKSCLGFL 471

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+        +        P +      
Sbjct: 472 RTVYDVFGFSF-KLNLSTRPEKYLGDIEVWNQAEKQLENSLNAFGEKWELNPGDG----- 525

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 526 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPVRFNLTF--V 564

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               + K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 565 SHDGNDKTRPVIIHRAILGSVERMIAILTENYGGK---WPLWLSPQQVMVVPVGP---AC 618

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+       G     D D G  +  +   A +  +   ++VG K  +   V I+ 
Sbjct: 619 DEYAQKVRQHFHDAGFMADVDVDPGCTLNKKIRNAQIAQYNFILVVGEKEKASGTVNIRT 678

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ + +      
Sbjct: 679 RDNKVHGERTIADTVERLLQL 699


>gi|302879510|ref|YP_003848074.1| prolyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302582299|gb|ADL56310.1| prolyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 569

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SH LM+R G I + + G+Y+W+PLG +AL  V AI+REE
Sbjct: 1   MRVSQFFISTLKEAPSEAELPSHILMMRAGYIRKLASGLYTWMPLGLRALRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW E+GR++ +G +ML++ DR++    +GPTHEEV+TDI R 
Sbjct: 61  MNNSGAIELLMPAVQPAELWDETGRWEVFGPQMLKIKDRHNNQFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF    +  + +Y  M+ +
Sbjct: 121 EIRSYRQLPVNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHADFDSLEQTYAVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +   
Sbjct: 181 YSRIFTRLGLKFRAVAADTGAIGGSGSHEFHVLADSGEDALAYC 224



 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 3/183 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGHIF   TKY+  M ATF  A GK   ++MG YGIG
Sbjct: 387 RNVVTGDISPDGKGTLEICRGIEVGHIFQLRTKYAADMKATFLDAQGKAQTLEMGCYGIG 446

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDV 379
             R+VAA IE +HD +GI  P ++APF+++L+ I     +  R A E++YA L     +V
Sbjct: 447 VSRIVAAAIEQNHDPRGITLPAAIAPFQVALVPIGMNKSEAVRAAAEQLYAELKASDIEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +DD  E+ G  FA  +L+G P +++VG + + +  +E + R       + L+  + +  
Sbjct: 507 LFDDRDERPGVMFADMELIGIPHRIVVGDRGLKEGLIEYQGRRDDAALSIPLQNALEFIQ 566

Query: 440 HRF 442
            + 
Sbjct: 567 SKL 569


>gi|149027310|gb|EDL82977.1| threonyl-tRNA synthetase, isoform CRA_a [Rattus norvegicus]
          Length = 722

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 151/440 (34%), Gaps = 40/440 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 306 LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 365

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 366 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 424

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 425 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 483

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 484 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 536

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 537 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 576

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 577 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 630

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+          V  D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 631 EYAQKVRQEFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 690

Query: 422 LTGIREDMSLEEVINYASHR 441
              +  + ++ E +      
Sbjct: 691 DNKVHGERTVGETVERLQQL 710


>gi|55741823|ref|NP_001006977.1| threonyl-tRNA synthetase, cytoplasmic [Rattus norvegicus]
 gi|59896667|sp|Q5XHY5|SYTC_RAT RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53734298|gb|AAH83914.1| Threonyl-tRNA synthetase [Rattus norvegicus]
          Length = 695

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 151/440 (34%), Gaps = 40/440 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 279 LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 338

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 339 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 397

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 398 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 456

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 457 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 509

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 510 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 549

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 550 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 603

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+          V  D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 604 EYAQKVRQEFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 663

Query: 422 LTGIREDMSLEEVINYASHR 441
              +  + ++ E +      
Sbjct: 664 DNKVHGERTVGETVERLQQL 683


>gi|195472319|ref|XP_002088448.1| Aats-thr [Drosophila yakuba]
 gi|194174549|gb|EDW88160.1| Aats-thr [Drosophila yakuba]
          Length = 747

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 158/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + + + ++ E  + 
Sbjct: 334 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMSFMKAEYRKR 393

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M        +     P +      IF +  +S
Sbjct: 394 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEK-ETFALKPMNCPGHCLIFDNRNRS 452

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F  TPE  K            
Sbjct: 453 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTPEQIKSEMKGCLEFLHH 511

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 512 VYTIFGFSFQLV-LSTRPDNYLGELEQWNAAEKALAESLNEFGMPWKENPGDG------- 563

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 564 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 602

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 603 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 656

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 657 QYAQSVRDQLHAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 716

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 717 DNKVHGEVSVAELITKLQK 735


>gi|150007315|ref|YP_001302058.1| threonyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|255014060|ref|ZP_05286186.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|256839604|ref|ZP_05545113.1| threonyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|166225472|sp|A6L9S2|SYT_PARD8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149935739|gb|ABR42436.1| threonyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|256738534|gb|EEU51859.1| threonyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 651

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 153/453 (33%), Gaps = 47/453 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 226 KMLDEYLTLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+
Sbjct: 285 QARYNYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  +  +
Sbjct: 345 KNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKQEFLNV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F  +  ++   +                  D    + +   D           
Sbjct: 404 MDIISIVFKTMNFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIV 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +  +   L                   E    +    K        +G  +  GT    Y
Sbjct: 450 EACEEKGL---------------KAKIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 494

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      + GAD + H  V +     G+M    AV+     GK  +W   + P ++ +
Sbjct: 495 NLPERFQLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPEQVCI 551

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   +I   L         DD  E+IG +    +L   P  +IVG K  
Sbjct: 552 MPI---SEKFNDYAWQIARELGNQEIRAIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEA 608

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +S+V ++ +  G +  M +       +     
Sbjct: 609 ENSEVSVRKQGEGDKGSMKIATFAALLNGEVEE 641


>gi|282850156|ref|ZP_06259535.1| proline--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579649|gb|EFB85053.1| proline--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 572

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +          
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKCDYAA 231



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 114/244 (46%), Gaps = 6/244 (2%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           PIG   + +F ++ D    + +           +   D   +               A  
Sbjct: 334 PIGLKQTEDFAIVVDESVMETYNVCG------GANKKDAHYVNINPKRDFNVEDIIIAPI 387

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  +             A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG
Sbjct: 388 RLITKDDVCPKCGGALEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIG 447

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA IE  HD  GIIWP S+APF+  ++ I A D+      + IY  L   G DV 
Sbjct: 448 VSRTLAAAIEQYHDENGIIWPRSIAPFEAVIVPINAKDEALMSTSQTIYTALQNAGVDVL 507

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R +G     +++ V +  + 
Sbjct: 508 LDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKSGEALPCAIDSVADKVTE 567

Query: 441 RFSN 444
              N
Sbjct: 568 LLQN 571


>gi|303228556|ref|ZP_07315384.1| proline--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516803|gb|EFL58717.1| proline--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 572

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AIIREE
Sbjct: 1   MLASKLYAPTLREVPSDADVVSQQLMLRAGFMRKVANGLYSFLPLGWRSIKKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRSGAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDVEYCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKD YSFD+    +  SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDGYSFDIDDAAADVSYKNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +          
Sbjct: 181 YSRIFTRCGLTFRPVEADSGAIGGSNTHEFMAIAEAGEADIIHCSACDYAA 231



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 6/244 (2%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+G   + +F ++ D    + +           +   D   I               A  
Sbjct: 334 PVGLKQTDDFAIVVDESVMETYNVCG------GANKADAHYININPKRDFNTEDIVVAPI 387

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  +        +    ++GIEVG +F  GTKYS  + AT+   +G+ + + MG YGIG
Sbjct: 388 RLITKDDVCPECHSPLEYSKGIEVGQVFKLGTKYSESLQATYLDQNGRPNAMVMGCYGIG 447

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA IE  HD  GIIWP ++APF++ ++ I A D+        IY  L     DV 
Sbjct: 448 VSRTLAAAIEQYHDENGIIWPRAIAPFEVVIVPINAKDEALMSTSTSIYDTLLNNKVDVL 507

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  ++ G +F  ADL+G+PL++ V    +  ++VEI+ R TG   +  ++EV N    
Sbjct: 508 LDDRKDRAGVKFKDADLIGYPLRITVSKNTLESNEVEIRVRKTGEAINCPIDEVSNKVQE 567

Query: 441 RFSN 444
             S 
Sbjct: 568 LLSQ 571


>gi|317121664|ref|YP_004101667.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591644|gb|ADU50940.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 644

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 152/434 (35%), Gaps = 42/434 (9%)

Query: 18  AEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           A+   H+ +   L      + + G   W P G      +    RE Q R G  E+  P +
Sbjct: 244 AKRRDHRKLGPELDLFHFEEIAPGYAFWHPKGATVYGLLERFSRELQARYGYQEVRTPEI 303

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              DLW  SG ++ Y + M  L +R        P +      I+RS I+SYR+LP    +
Sbjct: 304 LKVDLWHRSGHWEHYRENMF-LIEREGAQFGVKPMNCPGHCLIYRSRIRSYRDLPLRLAE 362

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                R E      G++R R F   DA+ F +  +  +    ++      I+    ++  
Sbjct: 363 YGRLARFERSGTLHGLLRVRGFEQDDAHLF-VREDQIEEEIGRVLELVDAIYGTFDMRY- 420

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  + P            A+    +   +        P +   +   +    I     
Sbjct: 421 EIKLATRPDKFMGEPALWERAEAALARALEAAGRQYSLAPGDGAFYGPKLDFYVI----- 475

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YV 312
                          DSL    + +   ++    F    ++      T+  A G++   V
Sbjct: 476 ---------------DSLGRKWQTATVQLD----FQMPIRF----DLTYVDASGQEQRPV 512

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++     ++   + G   +W   +AP ++ ++ +        D   ++  RL
Sbjct: 513 MIHRAIMGSLERFIGILIEHYAGAFPVW---LAPVQVRVLPV---SDRHHDYARRVEERL 566

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V  D   E++G +   A +   P  ++VG +   +  V ++ R  G      LE
Sbjct: 567 RAEGLRVEVDARDEKLGYKIRQAQVEKVPYMLVVGDREAQEGTVAVRSRDRGDLGSQPLE 626

Query: 433 EVINYASHRFSNNR 446
                 +   +  R
Sbjct: 627 AFARQVAAAVAERR 640


>gi|73951037|ref|XP_536172.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 1
           [Canis familiaris]
          Length = 802

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 158/446 (35%), Gaps = 44/446 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + +       H  S G   +LP G    + +   IREE +R
Sbjct: 386 MMKTWEKFQEEAKNRDHRKVGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHR 445

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + ++ LW  SG +  Y + M    D         P +      +F    +
Sbjct: 446 RNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAHRPR 504

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R +P       +  R+EL     G+ R R F   DA+ F  T E  +           
Sbjct: 505 SWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQ 563

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 564 SVYSTFGFSF-QLNLSTRPENFLGEVELWDEAEKQLQNSLVEFGKPWKMNPGDG------ 616

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L    T+
Sbjct: 617 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TY 654

Query: 303 KGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG  K + V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      
Sbjct: 655 VSKDGDDKRNPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---T 708

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V ++
Sbjct: 709 CEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNVR 768

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R   I  ++S+   I+   +   + 
Sbjct: 769 TRDNKIHGEISVTSAIHKLKNLKKSR 794


>gi|294499151|ref|YP_003562851.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294349088|gb|ADE69417.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 405

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 161/435 (37%), Gaps = 42/435 (9%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H+ +   L   M  + + G+  +LP G    + +    +++  + G  E+  P 
Sbjct: 6   EAEKRNHQKLGQELELFMSIEEAPGMPFFLPNGMIIRNELENYWKQKHYKAGYQEIKTPI 65

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +   +LW +SG ++ Y + M   ++ +++     P +      +F S  +SYR LP  + 
Sbjct: 66  MMKQELWEQSGHWEHYHENMY-FSNVDEQNYAIKPMNCPGAILLFSSKRRSYRELPIRYA 124

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ L  R EL     G++R R F   DA+ F +     +   +++       +   G   
Sbjct: 125 ELGLVHRHELSGSLNGLLRVRSFTQDDAHLF-VELSQIEAEISRILAFIHDFYSHFGFDY 183

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P     + E    A+     V   K         +   +   I  + +    
Sbjct: 184 -KVELSTRPEKFMGNIETWNQAEKSLQSVLSEKGLDYQVNEGDGAFYGPKIDFHILD--- 239

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-Y 311
                                      R  + G +              + G D K H  
Sbjct: 240 ------------------------SLGRSWQCGTV-QLDFLMPEKFDCMYIGEDNKPHRP 274

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +     G++    A++   ++G+  +W   +AP ++ L+ I        +   K+   
Sbjct: 275 VMIHRAIYGSVERFMAILIEHYEGQFPLW---LAPVQLKLLPIAP---PHVEYAYKVKHE 328

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  DD  E+IG +   A++   P   ++G K V +  + ++         +S+
Sbjct: 329 LELKGYRVEVDDRIEKIGLKIREAEMQKVPYMAVIGDKEVENESLAMRKHGKKNIGTVSM 388

Query: 432 EEVINYASHRFSNNR 446
           EE   + +   ++NR
Sbjct: 389 EEAAVHLNKEKNSNR 403


>gi|257064333|ref|YP_003144005.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791986|gb|ACV22656.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Slackia
           heliotrinireducens DSM 20476]
          Length = 586

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 154/453 (33%), Gaps = 50/453 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L   +    +A+   H+ +   +   M      G   WLP G K  + +     +
Sbjct: 175 ASKEELAEYERIQEEAKKRDHRKIGQEMELFMFADEGPGFPFWLPNGTKLKNALIEYWHD 234

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              +    E+  P + S  LW  SG +D Y + M      +++     P +      I++
Sbjct: 235 MMAKYNYDEVETPQILSRKLWETSGHWDHYKENMYT-TVIDEEDYAVKPMNCPGACLIYK 293

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR+LP    +  L  R EL+    G+ R R F   D + + +TPE       +  
Sbjct: 294 SRPRSYRDLPLKLAEAGLDHRHELKGALHGLFRVRAFTQDDGHIY-VTPEQISDIVLETA 352

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             +   + + G +   +   + P     S E    A+ G  +    K   D+ +   +  
Sbjct: 353 RLFDEYYQQFGFEY-KVELSTRPEDSMGSDEDWERAENGLREAL-EKMGKDYILNEGDGA 410

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYS 295
           F        +                          K    R  + G I   F     + 
Sbjct: 411 FYGPKIDFHL--------------------------KDCLGRTWQCGTIQLDFQLPQNF- 443

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG K   + +   G G+      ++   + GK   W   +AP ++ ++ +
Sbjct: 444 ---ELEYMAADGTKKRPIMIHRAGFGSFERFIGMLTEQYAGKFPTW---LAPLQVKILPV 497

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSD 413
               +  RD   ++   L   G     D   E+IG +   A      P  +I+G +    
Sbjct: 498 ---SEKTRDYALEVGQVLRDAGVRAVVDTRDEKIGYKIREARSTDRVPYMLILGEQERDG 554

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             + ++ R         L+E I   +   +  R
Sbjct: 555 KYISVRDRSN-ETVARQLDEFIADITAEIAERR 586


>gi|269797927|ref|YP_003311827.1| prolyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094556|gb|ACZ24547.1| prolyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 572

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG K++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWKSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDIDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +          
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKCDYAA 231



 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 6/244 (2%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+G   + EF ++ D    + +           +   D   +               A  
Sbjct: 334 PVGLQQTDEFAIVVDESVMETYNVCG------GANKKDAHYVNINPKRDFNVEDIIVAPI 387

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  +             A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG
Sbjct: 388 RLITKDDVCPKCGGALEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIG 447

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA IE  HD  GIIWP S+APF+  ++ I A D+      + IY  L   G DV 
Sbjct: 448 VSRTLAAAIEQYHDENGIIWPRSIAPFEAVIVPINAKDEALMATSQTIYTALQNAGVDVL 507

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R +G     +++ V +  + 
Sbjct: 508 LDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKSGEALPCAIDSVADKVTE 567

Query: 441 RFSN 444
              +
Sbjct: 568 LLQD 571


>gi|165977268|ref|YP_001652861.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|226731422|sp|B0BT03|SYP_ACTPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|165877369|gb|ABY70417.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 571

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ Q KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQTQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVFS 224



 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +        +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|237739058|ref|ZP_04569539.1| prolyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423658|gb|EEO38705.1| prolyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 567

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 117/225 (52%), Positives = 154/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR  MI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 1/169 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D
Sbjct: 398 KLHSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNND 457

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GIIWP S+AP+ + +I     ++      EKIY  L     DV  DD  E+ G +F  
Sbjct: 458 ENGIIWPVSIAPYIVDVIPANIKNEGQVSLAEKIYNELQAEDIDVMLDDRDEKPGFKFKD 517

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ADL+GFP +V+VG +   +  VE+K R TG   ++S  EV+        
Sbjct: 518 ADLIGFPFKVVVGKR-ADEGIVEVKIRKTGETLEVSESEVVAKIKELMK 565


>gi|86143057|ref|ZP_01061479.1| threonyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85830502|gb|EAQ48961.1| threonyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 648

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 157/441 (35%), Gaps = 46/441 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   ++  Q + G   +  P
Sbjct: 238 AKKRDHRKLGKELQLFT-FSQKVGQGLPLWLPKGAALRERLENFLKAAQKKAGYEMVVSP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG++  +        +  +  P +     +IF +   SYR+LP 
Sbjct: 297 HIGQKELYVTSGHYAKYGEDSFQPITTPAEGEEFLLKPMNCPHHCEIFNATQWSYRDLPK 356

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TP+     + K+    L +F  LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDDEFMKVIDLVLYVFGSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                  D    + +   D       +   +      LN +V
Sbjct: 416 FENFTAQVSLR--------------DPENKEKYIGTDENWAKAENAIINAAKAKGLNYVV 461

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKG 304
                          E    +    K        +G  +  GT    Y+LP      +KG
Sbjct: 462 ---------------ETGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFELAYKG 506

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +D ++H  V +     G+M    A++     G   +W   + P + +++ +    +   +
Sbjct: 507 SDNEEHRPVMIHRAPFGSMERFVAILLEHTGGNFPLW---LMPEQATVLTL---SENYEN 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L         DD GE +G +   A++   P  +I+G K  +D  V ++    
Sbjct: 561 YAQNVLTLLENHDVRATIDDRGETMGRKIREAEMQKTPYMLIIGEKEANDGTVSVRKHGG 620

Query: 424 GIREDMSLEEVINYASHRFSN 444
                M++ +         + 
Sbjct: 621 EDLGTMTVADFAKIIEAEIAQ 641


>gi|91215264|ref|ZP_01252236.1| threonyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186869|gb|EAS73240.1| threonyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 648

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 159/443 (35%), Gaps = 48/443 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +   G+  WLP G    D +   +++ Q   G   +  P
Sbjct: 238 AKKRDHRKLGKELKLFA-FSQKVGLGLPLWLPKGAALRDRLEKFLKDAQENAGYQPVVSP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L++ SG +  YG++  +     ++ +  +  P +     +I+ +   SYR+LP 
Sbjct: 297 HIGQKELYMTSGHFQKYGEDSFQPIKTPQDGEEYLLKPMNCPHHCEIYNAQTWSYRDLPQ 356

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    +R E      G+ R R F   DA+ F  TPE     + K+    L +F  LG
Sbjct: 357 RYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQLDEEFKKVIDLVLYVFGSLG 415

Query: 190 LKSIPMRAESG----PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            ++   +        P     S E    A++        K      +  E   +   +  
Sbjct: 416 FENFTAQVSLRDPENPSKYIGSDENWKKAESAILNAAEEKGLTYKIVKGEAAFYGPKLDF 475

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
                                        K    R  ++G I      Y+LP      +K
Sbjct: 476 ---------------------------MVKDALGRQWQLGTI---QVDYNLPERFELEYK 505

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+D + H  V +     G++    A++     G   +W   + P + ++++I    +   
Sbjct: 506 GSDNEMHRPVMIHRAPFGSLERFIAILIEHTGGNFPLW---LMPEQATILSI---SEKYE 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+ + L K      +D+ GE +G +   A++   P  +IVG   V +  V ++   
Sbjct: 560 NYSKKVLSLLKKHEIRATFDNRGETMGKKIREAEMNKTPYMLIVGESEVENETVSVRKHG 619

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS+       + +    
Sbjct: 620 GEDLGQMSITSFAEIINAQIDKE 642


>gi|115350544|ref|YP_772383.1| prolyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122324080|sp|Q0BIH4|SYP_BURCM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115280532|gb|ABI86049.1| prolyl-tRNA synthetase [Burkholderia ambifaria AMMD]
          Length = 578

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 130/224 (58%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV + K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADVRDVKKGDPSPDGKGTIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSDAMGATFLDESGKPQPMLMGCYGVGITRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +      + R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDMVREAADKLYAELAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       +  +E     + +  
Sbjct: 532 HRLVIGERGLKEGKIEYQGRRDAEATLLPADEAAATVTEKIR 573


>gi|172057852|ref|YP_001814312.1| prolyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|226701289|sp|B1YI68|SYP_EXIS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171990373|gb|ACB61295.1| prolyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 566

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE  SH+L+LR G + Q++ GIYS+LPL ++ L  +  IIR+E
Sbjct: 1   MKQSKLFMPTLREVPSDAEAISHQLLLRAGFMRQNAAGIYSYLPLAKRVLSKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P +Q A+LW E+GR+D YG E++RL DR+D+    G THEE++T I R 
Sbjct: 61  MEGAGAQELLMPAIQPAELWEETGRWDIYGPELMRLTDRHDRRFALGATHEELITSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ+K+RDE RPRFG++R REF+MKDAYSF  T E  +  Y  MF +
Sbjct: 121 ELNSYKKLPVNLFQIQMKYRDERRPRFGLLRGREFIMKDAYSFHSTQESLEEEYQNMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL+  P+ A+SG IGG  +HEF  LA  GE  +  S       
Sbjct: 181 YTKIFTRVGLEFRPVVADSGAIGGSGTHEFHALAAIGEDTIVYSDQSDYAA 231



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 3/202 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSAT 301
           +    V+      A  +D+   +  D  P+ +      RGIEVG +F  GT+YS  M+AT
Sbjct: 363 THYVHVDPSRDFEAEYTDLRFVEEGDVSPDGQGHVKFARGIEVGQVFKLGTRYSEGMNAT 422

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK   + MG YGIG  R ++AV+E  +D +GIIWP ++APF + LI +   +   
Sbjct: 423 FLDEGGKAQPLIMGCYGIGVSRTMSAVVEQHYDERGIIWPKAIAPFDVHLIAVNGKNAEQ 482

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +Y  L+  G  V +DD  E+ G +FA ADL+G P+++ VG K   D  VE+K R
Sbjct: 483 LEVAETVYRELTAAGFSVLFDDRKERAGVKFADADLIGLPVRINVGKK-APDGIVELKAR 541

Query: 422 LTGIREDMSLEEVINYASHRFS 443
             G  E++   +++      + 
Sbjct: 542 RGGEAEEIQQADLLEAVRSLYE 563


>gi|291286279|ref|YP_003503095.1| prolyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883439|gb|ADD67139.1| prolyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 570

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+E P DAE+ SHKLM R GMI + + GIYS+LPLG   +  V  I+R+ 
Sbjct: 1   MRYSKYFIPTLREVPADAEVVSHKLMARAGMIKKVASGIYSYLPLGLVVIKKVEDIVRKC 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A+E+ +P++Q A+LW ESGR+D YGKE+LR+ DR+++   YGPTHEEV TDI RS
Sbjct: 61  MNEADAVELMMPSVQPAELWQESGRWDFYGKELLRIKDRHNREFCYGPTHEEVTTDIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 YINSYKALPVNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDMDDAGANISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF   GL+   + A+SG IGG  SHEF+VLA TGE  V          
Sbjct: 181 YRRIFEMCGLRYKVVDADSGAIGGSFSHEFMVLASTGEDFVISCNSCDYSA 231



 Score =  225 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 2/232 (0%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G          ++          +  +   ++       + +  D  N +  D   E 
Sbjct: 335 PVGLKIPVYGDYAVEAMGNYCVGANEKEMHKINVNHGRDFNFESVDDFRNAEAGDVCCEC 394

Query: 275 KRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  +GIEVGHIF  GTKYS  M+A +   DGK     MG YGIG  RVVAA IE +
Sbjct: 395 GGTYEITKGIEVGHIFKLGTKYSSSMNAMYLDKDGKRKPFVMGCYGIGITRVVAAAIEQN 454

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD KGI+WP ++APFKI ++ +   DQ   +  E IY  L   G +V  DD  E+ G +F
Sbjct: 455 HDEKGIVWPVNLAPFKICVLPLAMKDQEVSETAENIYKDLINKGVEVLLDDRDERPGVKF 514

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             A+L+G PL+V++G K ++  K+E+  R +G   ++ +E  ++    +   
Sbjct: 515 NDAELIGIPLRVVIGKKTLAQGKIEVTVRASGESYEVDVEGCVDVLLQKLEE 566


>gi|259502210|ref|ZP_05745112.1| threonine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169828|gb|EEW54323.1| threonine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 600

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +    D  +  ++L L    +  +   G+  W+P G      +   I + +   G   + 
Sbjct: 191 EAREHDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGATIRRTIERYIIDREVADGYEHVY 248

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG ++ Y  +M    D  D  M+   P +      I++ HI+SYR+LP
Sbjct: 249 TPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLEIRPMNCPSHIQIYKHHIRSYRDLP 308

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 309 MRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-VDQIRDEFAKILNLIMDVYKDF 367

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + +   D M            D ++L+  
Sbjct: 368 DITDYSFRLSLR--------------DPKNKEKYYGNDEMWDESQKLLKAAMDDLNLD-- 411

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         ++ G DGK
Sbjct: 412 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMQPDRFG--------LSYVGKDGK 463

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   D+   D  ++
Sbjct: 464 EHMPVMIHRGIVGTMERFVAYLTEIYKGAFPTW---LAPEQVHIIPVS--DEKHGDYAKQ 518

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++      V  DD  E++G +   A     P  ++VG   V D+ V ++      + 
Sbjct: 519 LADKMKAAQIRVVVDDRNEKMGYKIREAQTQKVPYTLVVGDDEVKDNAVSVRKYGEEAQN 578

Query: 428 DMSLEEVINYASHRFSNN 445
            MS +  +N      ++ 
Sbjct: 579 SMSQDAFMNEILADIASY 596


>gi|83647457|ref|YP_435892.1| prolyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|114152199|sp|Q2SD07|SYP_HAHCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83635500|gb|ABC31467.1| prolyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 574

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASRYLIATLKETPADAEVISHQLMLRAGMIRKLAAGLYTWLPLGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW+ESGR++ YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDRSGAQEVLMPAVQPAELWIESGRWEQYGGELLRIHDRHNRDFCVGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ+KFRDE RPRFG+MR+REFLMKDAYSF +  E    +Y  M+ +
Sbjct: 121 ELKSYKQLPANFYQIQMKFRDERRPRFGIMRAREFLMKDAYSFHVNQESLDETYMVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL   P++A+SG IGG  SHEF VLA++GE  +  S
Sbjct: 181 YTRIFTRFGLDFRPVQADSGSIGGSSSHEFHVLANSGEDLIAFS 224



 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 115/200 (57%), Gaps = 3/200 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +          T+D+ N    D  P+ K   V  +GIEVGH+F  G KYS  M+AT    
Sbjct: 375 VNWGRDCEIKETADLRNVVEGDLSPDGKGVLVLKKGIEVGHVFKLGDKYSSAMNATVLDE 434

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDA 364
           +GK   +QMG YGIG  RVVAA IE  HD KGIIWPD++APF+++L+ +  H   V R+ 
Sbjct: 435 NGKATVMQMGCYGIGVSRVVAAAIEQGHDDKGIIWPDALAPFEVALVPLNMHKSDVVREK 494

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L + G DV  DD  E+ G +FA  +L+G P +V++  + +++ KVE K R   
Sbjct: 495 AESLYAELLQAGVDVLLDDRNERPGVKFAEMELIGIPHRVVISDRGLAEGKVEYKGRRDT 554

Query: 425 IREDMSLEEVINYASHRFSN 444
              DM+++ V+N+   +   
Sbjct: 555 DSTDMTVDTVVNFIKEKLKK 574


>gi|86749289|ref|YP_485785.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|86572317|gb|ABD06874.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris HaA2]
          Length = 661

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 140/446 (31%), Gaps = 44/446 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++   +R       
Sbjct: 236 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWSIFQSLVGYMRRRLAG-D 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M           + +     P +      IF+ 
Sbjct: 293 YDEVNAPQILDKVLWETSGHWEWYRENMFAAQSAGEDAEDKRWFALKPMNCPGHVQIFKH 352

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T         K+  
Sbjct: 353 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEAQLADECMKIND 411

Query: 180 SYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             +  +   G    + ++  + P     + E    A+        +    +      N  
Sbjct: 412 LIMSTYSDFGFDGELTVKLSTRPDKRVGTDEMWDHAER-----VMATVLSEIKAQGSNRI 466

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
             +I             Y                       R  + G        ++LP 
Sbjct: 467 KTEINPGEGAFYGPKFEYVLRDA----------------IGRDWQCGTT---QVDFNLPE 507

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A +  ADG K   V +     G+M     ++     G   +W   +AP ++ +  I 
Sbjct: 508 RFGAFYIDADGAKKAPVMVHRAICGSMERFIGILIEHFAGNFPLW---LAPVQLVVATIT 564

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      +  +++ A   + G  V  D   E+I  +     L   P  ++VG K      
Sbjct: 565 SEGD---EYAKQVVAAARRAGLRVDIDLRNEKINLKVREHSLAKVPALLVVGKKEAETHS 621

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++   +  +  M   E I      
Sbjct: 622 VSVRRLGSDGQTVMPTAEAIAALVDE 647


>gi|114566427|ref|YP_753581.1| prolyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318501|sp|Q0AYJ4|SYP_SYNWW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114337362|gb|ABI68210.1| prolyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 570

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 171/282 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F P L+E P +AE+ SH+L+LR G I + + G+YS+LPL  + L  +  I+REE
Sbjct: 1   MKASELFFPTLREVPSEAEVLSHQLLLRAGFIRKATAGVYSYLPLANRVLKKIMNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW +SGR++ YG EM RL DR+++    GPTHEE++T +  +
Sbjct: 61  MDRAGGQEVILPIIQPAELWKKSGRWEVYGDEMFRLKDRHNRDFALGPTHEEIITTLVDA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ K+RDE+RPRFG+MR REF+MKD YSFD+  EG   SY+KM+ +
Sbjct: 121 DVHSYRHLPLLLYQIQNKYRDEIRPRFGLMRGREFIMKDLYSFDIDEEGLDISYHKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL L+   + A+SG IGG+ SHEF+VLA+ GE ++   K+        +     
Sbjct: 181 YNRIFQRLKLQYRVVEADSGAIGGNESHEFMVLAENGEAEIVYCKNCDYGANTEKAVCSL 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           +   +    +              + L D +   K    + +
Sbjct: 241 EEPKVTEEEQLELEKVHTPGQRTIQDLVDYMNIPKEKQIKTL 282



 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 2/206 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++        A  +D+ N    DS P       S RGIEVGHIF  GTKYS  +
Sbjct: 362 DDYHFINVNLGRDFTPAGINDIRNAVAGDSCPVCSAPLYSMRGIEVGHIFKLGTKYSEVL 421

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A +    G++  + MG YGIG  R +AA +E S D  GI+WP  + PF++ ++ + + +
Sbjct: 422 EANYLDQKGQEKPMVMGCYGIGISRTMAAAVEQSADENGIVWPLPITPFEVIIVPVNSKN 481

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +    A   +Y    + G +   DD  E+ G +F  ADL+G PL++ +G + + + +VE+
Sbjct: 482 EEQMQAAWSLYEEFKQEGLETIVDDRDERAGVKFKDADLIGIPLRITIGPRSLQEKQVEV 541

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K R     E + L+ V +        
Sbjct: 542 KKRSDKDIELVPLDAVSSRVKLMLKE 567


>gi|325982765|ref|YP_004295167.1| prolyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532284|gb|ADZ27005.1| prolyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 569

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFVSTLKEAPAEAELISHKLMLRAGLIKRLGSGLYTWMPLGLRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR+     +GPTHEE++TD  R 
Sbjct: 61  MNSSGAVEILMPAIQPAELWQETGRWDVFGLQMLKIKDRHKHDFCFGPTHEEIITDTVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +    +Y  M+ +
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHTNEDSLMQTYQLMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL+   + A++G IGG  SHEF VLAD+GE  +   
Sbjct: 181 YSRIFTRIGLQFRAVSADTGAIGGSGSHEFHVLADSGEDAIAFC 224



 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+ N    D+ P+ K      RGIEVGHIF   TKYS  M ATF    G   Y++MG
Sbjct: 379 YVFDIRNVVPGDASPDGKGILEICRGIEVGHIFQLRTKYSKIMKATFLDESGSTQYMEMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE +HD  GII+P ++APF++++I I    +   ++  EK+Y +   
Sbjct: 439 CYGIGVSRIVAAAIEQNHDEYGIIFPAAIAPFQLAIIPIGLQKNPQVKEIVEKLYQQFLD 498

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +V  DD  E+ G  FA  +L+G P ++++G + +  S +E + R     E + ++E+
Sbjct: 499 AHIEVLLDDRDERPGVMFADMELMGIPHRIVIGERGLKQSTIEYQGRKDRSPEAIFIDEI 558

Query: 435 INYASHRF 442
             +   + 
Sbjct: 559 FPFIFTKL 566


>gi|224539835|ref|ZP_03680374.1| hypothetical protein BACCELL_04745 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518545|gb|EEF87650.1| hypothetical protein BACCELL_04745 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 519

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 158/453 (34%), Gaps = 47/453 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 99  KMLDEYLAMLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRI 157

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+
Sbjct: 158 QARYDYQEVITPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIY 217

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++
Sbjct: 218 KNSPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRV 276

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +F  +   ++  +                  D    + +   D           
Sbjct: 277 MDIISIVFRSMDFANVEAQISLR--------------DKVNREKYIGSDENWERAEQSII 322

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +  +   L                   E    +    K        +G  +  GT    Y
Sbjct: 323 EACEEKGL---------------SARIEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 367

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      + GAD + H  V +     G+M    AV+     GK  +W   + P ++++
Sbjct: 368 NLPERFELEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPEQVAI 424

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  +++   L +       D+  E+IG +    +L   P  +IVG K  
Sbjct: 425 LPI---SEKFNDYAQEVKKFLKQYDIRAIVDERNEKIGRKIRDNELKRIPYMLIVGEKEA 481

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +V ++ +  G +  M  EE     +    N
Sbjct: 482 ENREVSVRKQGEGDKGTMKFEEFAKILNEEVQN 514


>gi|260914628|ref|ZP_05921094.1| proline-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631227|gb|EEX49412.1| proline-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 571

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEASIVSHQLMLRAGMIRPLASGLYTWLPTGLRVLNKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +   Q A+LW ESGR++ YG E+LR  DR D+  + GPT+EEV+TD+ R 
Sbjct: 61  MDKSGALEVKMAVTQPAELWQESGRWEEYGPELLRFKDRGDRDFVIGPTNEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ECASYKQLPLNLYHIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTHECLQKTYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 119/208 (57%), Gaps = 3/208 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  
Sbjct: 364 QDGKHYFGINWERDLPLPQIADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSAA 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT +G DG+   + MG YGIG  RV+AA IE  HD +GIIWP+++APFK++++ +  H
Sbjct: 424 MNATVQGEDGRPQTMIMGCYGIGVTRVIAAAIEQHHDERGIIWPENIAPFKVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G +V +DD  E+ G  FA  +L+G P  +++G K +   ++
Sbjct: 484 KSESVQQFAEELYRTLMAQGVEVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R +G +E ++ E++++    +F+ 
Sbjct: 544 EYKNRRSGEKEMIAKEQLLDVLKAKFNQ 571


>gi|239905697|ref|YP_002952436.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259516431|sp|C4XL11|SYT_DESMR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239795561|dbj|BAH74550.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 647

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 150/433 (34%), Gaps = 44/433 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G+     +    R E  R G
Sbjct: 231 YLHHIEEAKKRDHRKLGAQLDLFS-FSEEVGAGMCIWHPKGELIRTIIEDFERREHLRRG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG YD+Y + M    + ++++    P +      I++S ++SY
Sbjct: 290 YDLVRGPLILRRELWERSGHYDNYRENMY-FTEIDEQSYGIKPMNCLSHMLIYKSRVRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++ +  R E      G++R R+F   DA+     P+  +     +      +
Sbjct: 349 RDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIL-CRPDQLQEEITGVVRFVQDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G         + P     S E    A         S          +   +   I 
Sbjct: 408 VGLFGFDF-EAELSTRPEKSIGSDEDWDRATKALVDAMESIGLPYEVNEGDGAFYGPKID 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
           +                             K    R  +   I      ++LP      +
Sbjct: 467 IKL---------------------------KDALDRRWQCATI---QCDFTLPERFDLVY 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG+    V +    +GA+     V+     G    W   ++P +  ++ +       
Sbjct: 497 TDADGERKRPVMLHRVILGAVERFLGVLIEHTAGALPTW---LSPVQARILIVT---DAQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++  E+  ARL + G  V  DD  E++G +   A +   P  ++ G K      + ++ R
Sbjct: 551 KEFAEQALARLKEAGIRVELDDRNEKLGFKVREAQVEKIPYMLVAGDKEKELGGLNVRLR 610

Query: 422 LTGIREDMSLEEV 434
                   +L+EV
Sbjct: 611 SGENLGVKTLDEV 623


>gi|84501632|ref|ZP_00999804.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
 gi|84390253|gb|EAQ02812.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
          Length = 659

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 83/463 (17%), Positives = 152/463 (32%), Gaps = 70/463 (15%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R  G+ H  + + G   W P G      +   +R +Q
Sbjct: 234 KAHLNMLEE----AAKRDHRKLGREMGLFHMQEEAPGQVFWHPNGWTIYTTLQDYVRRKQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD----------------RNDKAMI 105
              G  E++ P +    LW  SG ++ Y   M  +                   + +   
Sbjct: 290 RAGGYNEINTPQVVDRKLWEASGHWEKYQHHMFIVEVDESRDGEHDDAAAKSREHTRINA 349

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFD 164
             P +      +F   +KSYR+LP    +     R E      G+MR R F   DA+ F 
Sbjct: 350 LKPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCARFEPSGALHGIMRVRGFTQDDAHIF- 408

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            T E  +    +       I+  LG     +R  + P     + E     +        +
Sbjct: 409 CTEEQIQEECARFIDFLADIYRELGFPEFEIRFATRPEKRVGTEESWDYVEGALENAIKA 468

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                   P +   +   +                                        +
Sbjct: 469 TGHDYVLEPGDGAFYGPKLDFYLTDA---------------------------------I 495

Query: 285 GHIFYFGTKYSLP-----MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           G ++  GT    P     + A +  ADG+ H    +    +G+      ++  +H GK  
Sbjct: 496 GRVWQCGTFQVDPNLPERLDAGYIAADGERHRPFMLHRAVLGSFERFIGILIENHAGKLP 555

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +W   +AP ++ +  I +      D C ++ A+L   G     D   E+I  +     + 
Sbjct: 556 LW---LAPRQVVVAAIVSD---ADDYCREVVAKLQAAGIRAETDLRNEKINYKVREHSVG 609

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             P  +  G K V +  V ++          +L+E+++     
Sbjct: 610 KVPYILACGMKEVEERTVSVRKLGEKQTSGATLDEIVDRLRTE 652


>gi|294339022|emb|CAZ87369.1| proline tRNA synthetase [Thiomonas sp. 3As]
          Length = 576

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+   +++P DA++ S  LMLR GMI +H+ G+YS+LPLG +++  V AI+REE
Sbjct: 1   MKISRFFISTQKDDPADADVRSQALMLRAGMIKKHAAGLYSYLPLGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR D +G E+LR+ DR+D+  +  PT EEV+TD+ RS
Sbjct: 61  MNRAGAIELLMPVVQPAELWQETGRLDQFGPELLRIKDRHDRDFVIQPTSEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S+R LP  FY IQ KFRDE RPRFGVMR+REF MKDAYSFD   E ++ SY  MF +
Sbjct: 121 EVRSWRQLPLNFYHIQTKFRDERRPRFGVMRAREFTMKDAYSFDRDFEAAQISYRVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y+RIF R G +   + A+SG IGG LSHEF V+ADTGE  +   +
Sbjct: 181 YVRIFQRFGFEFRAVAADSGAIGGSLSHEFHVIADTGEDAIAYCE 225



 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 83/247 (33%), Positives = 117/247 (47%), Gaps = 15/247 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GPIG    H   V+AD          +  DF + +   DF        +      P    
Sbjct: 341 GPIGTV--HPVRVIADRT------VANMSDFVVGANAVDFH----YTGVNWGRDLPEPEV 388

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N +  D  P+ K      RGIEVGH+FY GTKYS  M ATF    GK   ++MG Y
Sbjct: 389 ADIRNVQAGDPSPDGKGVLSICRGIEVGHVFYLGTKYSAAMGATFLDDKGKSQTLEMGCY 448

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R++ A IE +HD KG+IWPD++APF   +  I     +  R A + +YA L   G
Sbjct: 449 GIGITRILGACIEQNHDAKGMIWPDAIAPFTAVICPIGYDRSEAVRQAADALYAELIAAG 508

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD GE+ G      +L+G P ++++  + ++   VE +HR       + L E   
Sbjct: 509 VDVALDDRGERPGVMLGDWELIGVPHRMVISDRGLAAGTVEYQHRRESAPTVLPLAEASA 568

Query: 437 YASHRFS 443
               R  
Sbjct: 569 QLQARLQ 575


>gi|218130015|ref|ZP_03458819.1| hypothetical protein BACEGG_01598 [Bacteroides eggerthii DSM 20697]
 gi|217987818|gb|EEC54144.1| hypothetical protein BACEGG_01598 [Bacteroides eggerthii DSM 20697]
          Length = 646

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 158/458 (34%), Gaps = 60/458 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q 
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGAALRIRLQEFLRRIQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +F  +  ++   +            IG D + E        E  +  + +      
Sbjct: 406 IISIVFQSMHFENFEAQISLRDKVNREKYIGSDENWE------KAEQAIIEACEEKGLKA 459

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                           E    +    K        +G  +  GT
Sbjct: 460 K------------------------------VEYGEAAFYGPKLDFMVKDAIGRRWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      + GAD + H  V +     G+M    AV+     GK  +W   + P
Sbjct: 490 IQVDYNLPERFQLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++++ I    +   D  +++   L +       D+  E+IG +    ++   P  +IV
Sbjct: 547 DQVAILPI---SEKFNDYAQEVKDYLKRYDVRAIVDERNEKIGRKIRDNEMKRIPYMLIV 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G K   + +V ++ +  G +  M  EE     +    N
Sbjct: 604 GEKEAENREVSVRKQGEGDQGTMKFEEFAKKVNEEVQN 641


>gi|51473419|ref|YP_067176.1| threonyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|73919822|sp|Q68XE8|SYT_RICTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51459731|gb|AAU03694.1| Threonine translase [Rickettsia typhi str. Wilmington]
          Length = 635

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 158/444 (35%), Gaps = 45/444 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLFMLEEAEKRDHRKIGKELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKNRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P L    LW  SG +  +  +M  L + +DK +   P +      IF+  IKSY
Sbjct: 289 YIEVKTPVLVDKSLWEASGHWAKFRCDMFTL-ETDDKILALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    E       +       +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-EEQITDETVRFCKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+           F+    P +   +   + 
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGNDEVWDKAEHALKTAVEKVGFIYTLNPGDGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G        + LP  + A +
Sbjct: 467 FVLTD---------------------------AIGRQWQCGT---LQMDFVLPERLDANY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G K   V +    +G++     ++   + GK  IW   +AP ++++  I       
Sbjct: 497 IAASGEKKRPVMLHRAILGSLERFIGILIEEYAGKFPIW---LAPVQVAIATITND---L 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L         +   ++I  +         P+  ++G K  ++ +V I+  
Sbjct: 551 NDYALEVQKTLIDNNIRTDINISPDKINYKIREFSNQKIPMIAVIGKKEQANKQVTIRKF 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            T  +E +S+E++I       SN 
Sbjct: 611 GTTGQEILSIEQLIAMIKKENSNY 634


>gi|85716379|ref|ZP_01047351.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85696736|gb|EAQ34622.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 679

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 142/446 (31%), Gaps = 45/446 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G      V A +R       
Sbjct: 257 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWTIFQAVIAYMRRRLAE-D 313

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M           + +     P +      +F+ 
Sbjct: 314 YDEVNAPQMLDKALWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKH 373

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       K+  
Sbjct: 374 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEEQLADECLKINE 432

Query: 180 SYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  +   G    + ++  + P     S      A+     V                 
Sbjct: 433 LILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLK--------------- 477

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
                S N I  +      A      E +       +    R  + G        ++LP 
Sbjct: 478 -RIAASNNRIKTEINPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLPE 527

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A +  ADG K   V +     G++     ++     G   +W   +AP +  +  I 
Sbjct: 528 RFGAFYIDADGGKKAPVMVHRAICGSIERFIGILIEHFAGHFPLW---LAPVQAVVTTIT 584

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      +  + + +   + G  V  D   E+I  +     L   P  ++VG K      
Sbjct: 585 SDGD---EYAKAVASAARRAGLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETES 641

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V I+   +  ++ M   E I      
Sbjct: 642 VSIRRLGSDGQKVMPTGEAIAALVEE 667


>gi|284048708|ref|YP_003399047.1| prolyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952929|gb|ADB47732.1| prolyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 571

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 153/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P +A I SHKLMLR G I + + G+YS+LPL  ++L  +  IIREE
Sbjct: 1   MRVSQLYAPTLREVPAEAVIESHKLMLRAGYIRKVAGGLYSYLPLAWRSLRKIEEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              TGA E+ +P +Q +++W ESGR+ +YG EM +L DR+ +    GPTHEE++T + R 
Sbjct: 61  MVPTGAQEIMMPIVQPSEIWQESGRWPAYGAEMFKLKDRHGRDFCLGPTHEELVTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T YQIQ KFRDE RPRFG+MRSREF+MKDAYSFD   EG   SY   + +
Sbjct: 121 DLRSYRQLPVTLYQIQSKFRDEKRPRFGLMRSREFIMKDAYSFDKDAEGLDKSYQDEYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  SHEF+ LAD+GE  +          
Sbjct: 181 YSRIFTRCGLDYRPVEADSGAIGGKGSHEFMALADSGEAGIVYCDTCEYAA 231



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 2/217 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +  +      +           +  +   +        Y   +D+      D  P     
Sbjct: 340 DKAIILIDHTVMHMHNVCCGANEKDVHYVNAEPSRDFVYTQVADISTAVAGDKCPHCDGH 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIEVG +F   TKYS  + AT+   DGK+H + MG YGIG  R +AA IE  HD 
Sbjct: 400 LKEARGIEVGQVFKLNTKYSEALHATYLDVDGKEHPLVMGCYGIGVGRTLAAAIEQHHDK 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GII P ++AP+++ ++ +   D+       +I+  L++ G D   DD  E+ G +F  A
Sbjct: 460 DGIIMPRNIAPYQVMVLAMNVKDEESWQKAVEIHDALNQAGIDTLLDDRDERAGVKFKDA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           DL+G PL++++G K +  + +E K R  G   D+S E
Sbjct: 520 DLIGCPLRIVIGPKTMKRNAMETKLRCNGEMADVSFE 556


>gi|238019359|ref|ZP_04599785.1| hypothetical protein VEIDISOL_01223 [Veillonella dispar ATCC 17748]
 gi|237864058|gb|EEP65348.1| hypothetical protein VEIDISOL_01223 [Veillonella dispar ATCC 17748]
          Length = 572

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +          
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKCDYAA 231



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 6/244 (2%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+G   + EF ++ D    + +           +   D   I               A  
Sbjct: 334 PVGLKQTEEFAIVVDESVMETYNVCG------GANKKDAHYININPKRDFNVEDIIVAPI 387

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  +             A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG
Sbjct: 388 RLITDDDVCPTCGGTLEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIG 447

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA IE  HD  GIIWP ++APF+  ++ I A D+      + IY  L   G DV 
Sbjct: 448 VSRTLAAAIEQYHDENGIIWPRAIAPFEAVIVPINAKDEALMSTSQTIYTALQDAGVDVL 507

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R +G     +++ V    + 
Sbjct: 508 LDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKSGEAITCAIDSVATKVTE 567

Query: 441 RFSN 444
              +
Sbjct: 568 LLQD 571


>gi|19704979|ref|NP_602474.1| prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|81848323|sp|Q8RIE2|SYP_FUSNN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19712883|gb|AAL93773.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 567

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 103/203 (50%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N   ++       T         + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNVNYDRDYTADIVTDIRKVRVGDNCITGGKLHSARGIECGQIFKLGDKYSKAMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+    GK  ++ MG YGIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V
Sbjct: 424 TYLDEKGKTQFMLMGCYGIGVTRTMAASIEQNNDENGIIWPVSIAPYIVDVIPANIKNEV 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EKIY  L +   DV  DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K 
Sbjct: 484 QVSLAEKIYNELQEEKIDVMLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++S  EVI        
Sbjct: 543 RRTGETLEVSQNEVIAKIKELMR 565


>gi|294791808|ref|ZP_06756956.1| proline--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294793669|ref|ZP_06758806.1| proline--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455239|gb|EFG23611.1| proline--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294457038|gb|EFG25400.1| proline--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 572

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +          
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKCDYAA 231



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 6/244 (2%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           PIG   + EF ++ D    + +           +   D   +               A  
Sbjct: 334 PIGLKQTEEFAIVVDESVMETYNVCG------GANKKDAHYVNINPKRDFNVEDIIVAPI 387

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  +             A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG
Sbjct: 388 RLITKDDVCPKCGGALEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIG 447

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA IE  HD  GIIWP S+APF+  ++ I A D+      + IY  L   G DV 
Sbjct: 448 VSRTLAAAIEQYHDENGIIWPRSIAPFEAVIVPINAKDEALMSTSQTIYTALQNAGVDVL 507

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R +G     +++ V +  + 
Sbjct: 508 LDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKSGEALPCAIDSVSDKVTE 567

Query: 441 RFSN 444
              N
Sbjct: 568 LLQN 571


>gi|149409915|ref|XP_001508543.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 719

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 150/444 (33%), Gaps = 40/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 303 LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYRK 362

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    +
Sbjct: 363 RGFQEVVTPNIYNSKLWLTSGHWQHYSENMFSFEVEK-EIFALKPMNCPGHCLMFDHRPR 421

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 422 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEEEIKSCLDFLK 480

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 481 TVYDVFGFSF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLIEFGEKWELNPGDG------ 533

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 534 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--VS 573

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +      C 
Sbjct: 574 HDGDDKKRPVIVHRAILGSVERMIAILTENFGGK---WPLWLSPRQVMVVPVGP---TCD 627

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 628 DYAQKVRQQFHDAQLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRTR 687

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  + ++ E I        + 
Sbjct: 688 DNKVHGERTISETIERLQQLKQSR 711


>gi|94986834|ref|YP_594767.1| prolyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|114152206|sp|Q1MRD0|SYP_LAWIP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94731083|emb|CAJ54446.1| Prolyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 575

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+WLPLG K L+   +IIR E
Sbjct: 1   MRWSQCYIPTLKEAPGDAELLSHKLLIRAGMIRKLTSGIYTWLPLGLKTLNKAISIIRSE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR+D YGKE+LR+ DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRIGAEEILMPMVQPADLWKESGRWDQYGKELLRIKDRHDREYCLGPTHEEVVTHLLRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR+REFLMKDAYSFD   EG+  SY+ MF +
Sbjct: 121 EVRSYRQLPINVYQIQTKFRDEIRPRFGLMRAREFLMKDAYSFDQDNEGADISYHTMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF  + L    + A+SG IGG+ SHEF+V+AD+GE  +   +      
Sbjct: 181 YKAIFTCMALDFRAVEADSGSIGGNFSHEFMVIADSGEDTIAFCRKCDWAA 231



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P   R     +GIEVGH+F  GTKYS  M+A F   +G++  + MG YGIG  RV+A
Sbjct: 390 DGCPSCGREIALTKGIEVGHVFKLGTKYSKSMNAFFLDENGEEQLMVMGCYGIGVSRVIA 449

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE ++D  GII+P  +APF+I LIN+   D+       +IY      G +VF DD  E
Sbjct: 450 ACIEQNNDKYGIIFPPPLAPFEIMLINLDPRDESVVMKASEIYQFFLSEGIEVFLDDREE 509

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + G +F  ADLLGFP+QVI+G+K +++  +E+K+R TG +   SLE  
Sbjct: 510 RPGIKFNDADLLGFPIQVIIGAKSLANGIIEVKNRKTGEKSSFSLERF 557


>gi|296135005|ref|YP_003642247.1| prolyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795127|gb|ADG29917.1| prolyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 576

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 163/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+   +++P DA++ S  LMLR GMI +H+ G+YS+LPLG +++  V AI+REE
Sbjct: 1   MKISRFFISTQKDDPADADVRSQALMLRAGMIKKHAAGLYSYLPLGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR D +G E+LR+ DR+D+  +  PT EEV+TD+ RS
Sbjct: 61  MNRAGAIELLMPVVQPAELWQETGRLDQFGPELLRIKDRHDRDFVIQPTSEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S+R LP  FY IQ KFRDE RPRFGVMR+REF MKDAYSFD   E ++ SY  MF +
Sbjct: 121 EVRSWRQLPLNFYHIQTKFRDERRPRFGVMRAREFTMKDAYSFDRDFEAAQISYRVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y+RIF R G +   + A+SG IGG LSHEF V+ADTGE  +   +
Sbjct: 181 YVRIFQRFGFEFRAVAADSGAIGGSLSHEFHVIADTGEDAIAYCE 225



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 117/247 (47%), Gaps = 15/247 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GPIG    H   V+AD          +  DF + +   DF        +      P    
Sbjct: 341 GPIGTV--HPVRVIADRT------VANMSDFVVGANAVDFH----YTGVNWGRDLPEPEV 388

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N +  D  P+ K      RGIEVGH+FY GTKYS  M ATF    GK   ++MG Y
Sbjct: 389 ADIRNVQAGDPSPDGKGVLSICRGIEVGHVFYLGTKYSAAMGATFLDDKGKSQTLEMGCY 448

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R++ A IE +HD KG+IWPD++APF   +  I     +  R A + +YA L   G
Sbjct: 449 GIGITRILGACIEQNHDAKGMIWPDAIAPFTAVICPIGYDRSEAVRQAADALYAELIAAG 508

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD GE+ G      +L+G P ++++  + ++   VE +HR       + L +   
Sbjct: 509 VDVALDDRGERPGVMLGDWELIGVPHRMVISDRGLAAGTVEYQHRRESAPTVLPLADACA 568

Query: 437 YASHRFS 443
               R  
Sbjct: 569 QLQARLQ 575


>gi|254303428|ref|ZP_04970786.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323620|gb|EDK88870.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 567

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N    +       T     +   + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNVNYGRDYTADIVTDIRTAKVGENCITGGKLHSARGIECGQIFKLGDKYSKAMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+   +GK  Y+ MG YGIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V
Sbjct: 424 TYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENGIIWPVSIAPYIVDVIPANIKNEV 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIY  L +   D   DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K 
Sbjct: 484 QVNLAEKIYNELEEEKIDSMLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++S  EVI        
Sbjct: 543 RRTGETLEVSENEVIAKIKELMK 565


>gi|307822387|ref|ZP_07652619.1| prolyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307736953|gb|EFO07798.1| prolyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 569

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L  ++E P DAEIASH+LM+R G+I + + G+Y+WLPLG + +  V  I REE
Sbjct: 1   MRTTQFPLNTVKETPADAEIASHQLMIRAGLIRKLAAGLYTWLPLGLRVMRKVEKITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +TGA+E+ +P LQ A+LW E+GR++ YG E+ RL DR+D+    GPTHEE++TD+ R+
Sbjct: 61  MEKTGALEVLMPGLQPAELWQETGRWEQYGPELARLKDRHDRDFCLGPTHEEIITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T+YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L  E  + +Y  M  +
Sbjct: 121 EIKSYKQLPITYYQIQSKFRDEIRPRFGVMRSREFIMKDAYSFHLDHESLQVTYEAMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+ LGL    + A+SG IGG +SHEF VLAD+GE  +  S
Sbjct: 181 YTNIFNHLGLNFRAVIADSGSIGGAVSHEFHVLADSGEDAIAFS 224



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGT 292
              + DD        E+        +D+      D  P+ K      RGIEVGHIF  GT
Sbjct: 358 CGANQDDKHYKGVNWERDLPVPDHIADLRMVVEGDPSPDGKGQITLARGIEVGHIFQLGT 417

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M A      GK+  + MG YGIG  RVVAA IE +HD KGIIWP ++APF+++L 
Sbjct: 418 KYSEAMKAGVINEGGKNQIMTMGCYGIGISRVVAAAIEQNHDDKGIIWPTNLAPFQVALC 477

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +  H  +  ++A EK+Y  L   G DV +DD   + G  F+  +L+G P  ++VG + +
Sbjct: 478 PMNMHKSERLKEASEKLYQDLLAAGIDVLFDDRKVRAGFMFSDMELIGIPHCIVVGDRGL 537

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               VE K R     E++   ++I++   + 
Sbjct: 538 DSGTVEYKARTAEANEEIPFADIIDFLKAKL 568


>gi|167648480|ref|YP_001686143.1| threonyl-tRNA synthetase [Caulobacter sp. K31]
 gi|189083602|sp|B0T0Z7|SYT_CAUSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167350910|gb|ABZ73645.1| threonyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 659

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 149/432 (34%), Gaps = 44/432 (10%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + +T     I +  KG+  W P G      + A +R   +  G  E+  P 
Sbjct: 244 EAERRDHRKLGKTMDLFHIQEEGKGMVFWHPKGWTLYLALEAYMRRRLDAAGYREVKTPQ 303

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW  SG  + +G  M        + +   P +      IF    KSYR LP    
Sbjct: 304 ILDKSLWERSGHAEKFGHAMFMCESAEGEVLAVKPMNCPGHIQIFNVGQKSYRELPLRMA 363

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R E      G+MR R F   DA+ F    E       +       ++  LG+  
Sbjct: 364 EFGACHRYEPSGAMHGIMRVRAFTQDDAHIF-CREEQVTEESARFIELLRSVYSDLGMHL 422

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              +  + P               GE  V+           +E        +    +   
Sbjct: 423 ADTKFSTRPELR-----------AGEDAVWD---------KAEAALSAAAEAAGETLVLQ 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KD 309
               A         L D++        R  + G        + LP  + A +   DG K 
Sbjct: 463 EGEGAFYGPKLEFSLKDAIG-------RVWQCGT---LQLDFVLPERLDAEYVAEDGSKK 512

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G+      ++  ++ G   +W   +AP ++ +  I +      D  +++ 
Sbjct: 513 RPVMLHRAILGSFERFIGILLENYAGHLPLW---LAPVQVVVATITSD---ADDYAQRVA 566

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL+ +G     D   E+I  +     L   P+  +VG K   + +V ++      ++ +
Sbjct: 567 ERLTSMGIRAEVDFRNEKINYKIREHSLAKVPVIAVVGRKEAENGEVALRRLGGEGQKVL 626

Query: 430 SLEEVINYASHR 441
           SLE+ +   +  
Sbjct: 627 SLEDAVRALTEE 638


>gi|304403794|ref|ZP_07385456.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304346772|gb|EFM12604.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 637

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 139/428 (32%), Gaps = 41/428 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  ++   I +   RD      +L L   M  + + G+  +LP G    + + +  RE Q
Sbjct: 230 QLDEHLHRIEEAKKRDHRKLGKELGLF--MFSEEAPGMPFYLPKGMAIRNELESFAREIQ 287

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P + +  +W +SG +D Y   M      ++      P +      I+++ 
Sbjct: 288 RLRAYAEVRTPLMMNNRIWEQSGHWDHYKDNMY-FTQVDETKFALKPMNCPGHMLIYKNS 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP    +     R E      G+MR R F   DA+ F L P   +     +   
Sbjct: 347 RHSYRELPIRLSEFGQVHRHEFSGALSGMMRVRTFCQDDAHLFVL-PSQIEEEIGLVIEL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G  +  +   + P     +      A+     V  ++         +   + 
Sbjct: 406 IGHIYDVFGF-AYKIELSTRPDDYMGAEALWDQAEQSLQSVLDARGIAYTINEGDGAFYG 464

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I  + +                               R  + G I     +       
Sbjct: 465 PKIDFHILDA---------------------------LQRSWQCGTI-QLDFQMPEKFDL 496

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G D  K   V +     G++     ++   + G   +W   +AP +  L+ +     
Sbjct: 497 TYIGEDNLKHRPVVIHRAVYGSIDRFIGILTEHYAGAFPLW---LAPVQAKLLPV---SD 550

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D    +  +L + G     DD  E++G +   A L   P  +I+G        V ++
Sbjct: 551 QYLDDAYAVKKQLEEAGIRAEVDDRNEKLGYKIREAQLEKTPYMLILGENERGSGSVSVR 610

Query: 420 HRLTGIRE 427
            R      
Sbjct: 611 KRSGEELG 618


>gi|119513050|ref|ZP_01632106.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119462292|gb|EAW43273.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 602

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 166/444 (37%), Gaps = 45/444 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   +++EQ + G + + 
Sbjct: 190 EEALRRDHRKLGKELGLFI-FSEQVGPGLPLWTPKGTLLRSVLEDFLKKEQLKRGYLPVV 248

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   +++A       +  P +      I++S ++S
Sbjct: 249 TPHIARVDLFKTSGHWQKYKEDMFPLMSDDEEAAALEQGFVLKPMNCPFHIQIYKSELRS 308

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F +TPE     +  +    L 
Sbjct: 309 YRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDSEFLNVVDLILS 367

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  L LK+   R        D       + D  E  +  +                  +
Sbjct: 368 VFKSLQLKNFKARLSFRDPASDKYIGSNEVWDKAEGAIRRA------------------V 409

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
               +        AA      + +F           R  ++G +      Y+LP      
Sbjct: 410 EKLGMNYFEGIGEAAFYGPKLDFIF------SDALEREWQLGTV---QVDYNLPERFDLE 460

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V +     G++  +  ++   + G   +W   +AP +  L+ +    + 
Sbjct: 461 YVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPVQARLLPVG---EA 514

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + + A++   G     D  G+++G     A+    P+  ++G+K V  + + I+ 
Sbjct: 515 QLDFAKDVAAKMVAEGIRAEVDTSGDRLGKIIRNAEKQKIPVMAVIGAKEVESNSLSIRT 574

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R +G    + ++EV++      +N
Sbjct: 575 RASGELGAIPVDEVVDKMKQAIAN 598


>gi|73951029|ref|XP_857141.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 2
           [Canis familiaris]
          Length = 799

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 158/446 (35%), Gaps = 44/446 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + +       H  S G   +LP G    + +   IREE +R
Sbjct: 383 MMKTWEKFQEEAKNRDHRKVGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHR 442

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + ++ LW  SG +  Y + M    D         P +      +F    +
Sbjct: 443 RNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAHRPR 501

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R +P       +  R+EL     G+ R R F   DA+ F  T E  +           
Sbjct: 502 SWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQ 560

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 561 SVYSTFGFSF-QLNLSTRPENFLGEVELWDEAEKQLQNSLVEFGKPWKMNPGDG------ 613

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L    T+
Sbjct: 614 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TY 651

Query: 303 KGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG  K + V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      
Sbjct: 652 VSKDGDDKRNPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---T 705

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V ++
Sbjct: 706 CEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNVR 765

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R   I  ++S+   I+   +   + 
Sbjct: 766 TRDNKIHGEISVTSAIHKLKNLKKSR 791


>gi|27229277|ref|NP_149065.2| threonyl-tRNA synthetase, cytoplasmic [Mus musculus]
 gi|59896669|sp|Q9D0R2|SYTC_MOUSE RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|26373003|dbj|BAB27429.2| unnamed protein product [Mus musculus]
 gi|74177703|dbj|BAE38950.1| unnamed protein product [Mus musculus]
 gi|74195699|dbj|BAE39654.1| unnamed protein product [Mus musculus]
 gi|74223282|dbj|BAE40773.1| unnamed protein product [Mus musculus]
 gi|74225376|dbj|BAE31616.1| unnamed protein product [Mus musculus]
 gi|148671337|gb|EDL03284.1| threonyl-tRNA synthetase, isoform CRA_b [Mus musculus]
          Length = 722

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 306 LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 365

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 366 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 424

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 425 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 483

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 484 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 536

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 537 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 576

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 577 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 630

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 631 EYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 690

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  + ++EE +          
Sbjct: 691 DNKVHGERTVEETVRRLQQLKQTR 714


>gi|160889627|ref|ZP_02070630.1| hypothetical protein BACUNI_02053 [Bacteroides uniformis ATCC 8492]
 gi|317479178|ref|ZP_07938315.1| threonyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860619|gb|EDO54050.1| hypothetical protein BACUNI_02053 [Bacteroides uniformis ATCC 8492]
 gi|316904666|gb|EFV26483.1| threonyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 646

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 156/458 (34%), Gaps = 60/458 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q 
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +F  +  ++   +            IG D + E        E  +  + +      
Sbjct: 406 IISIVFESMDFENFEAQISLRDKVNREKYIGSDENWE------KAERAIIEACEEKGLKA 459

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                           E    +    K        +G  +  GT
Sbjct: 460 K------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      + GAD + H   M      G+M    AV+     GK  +W   + P
Sbjct: 490 IQVDYNLPERFQLEYTGADNQKHRPVMVHRAPFGSMERFVAVLIEHTAGKFPLW---LTP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++++ I    +   D   ++   L +       D+  E+IG +    ++   P  ++V
Sbjct: 547 DQVAILPI---SEKFNDYAHEVKQYLKRYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVV 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G K   + +V ++ +  G +  M  EE     +    N
Sbjct: 604 GEKEAENKEVAVRKQGEGDKGTMKFEEFAKKMNEEVQN 641


>gi|332286931|ref|YP_004418842.1| prolyl-tRNA synthetase [Pusillimonas sp. T7-7]
 gi|330430884|gb|AEC22218.1| prolyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 577

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKY +  L+E P +AE+ SH+LM R GMI + + GIY+++PLG K L  +  I+R+E
Sbjct: 1   MHASKYHINTLKEAPAEAEVKSHQLMTRAGMIRKAAGGIYTYMPLGLKVLRKIENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIE+ +P +Q A+LWVESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MDQAGAIELLMPVVQPAELWVESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S+R LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD     ++ SY+ M+ +
Sbjct: 121 EIHSWRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEASAQSSYDTMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  +  + +     
Sbjct: 181 YMRIFQRLGLTFRAVAADTGSIGGSRSHEFQVIADTGEDLIVYNPNTQYAA 231



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 110/204 (53%), Gaps = 2/204 (0%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR-VSARGIEVGHIFYFGTKYSLPMSAT 301
                +      P A  +D+ N    D  P+  +    RGIEVGH+F+ G KYS  ++AT
Sbjct: 373 FHYTGVNWGRDLPEATVADLRNVVAGDPDPQGGQLAIQRGIEVGHVFFLGDKYSKALNAT 432

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQV 360
           F   DGK   +QMG YGIG  R+ AA IE  HD KGIIWP S+APF++ +  +  H  + 
Sbjct: 433 FLETDGKPALLQMGCYGIGISRIAAAAIEQCHDEKGIIWPKSIAPFELVICPMGWHKSET 492

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R+  E++Y  L   G +V  DD   + G  FA  +L+G PL++ +G + + +  VEI+ 
Sbjct: 493 VRNTAEELYQSLKAQGVEVMLDDRDVRPGIMFADWELIGVPLRITIGDRGLKEGIVEIQA 552

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R   I   +++ + ++YA     +
Sbjct: 553 RRQEITNKVAVADALDYALELLQS 576


>gi|317476770|ref|ZP_07936013.1| threonyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906945|gb|EFV28656.1| threonyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 646

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 158/458 (34%), Gaps = 60/458 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q 
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGAALRIRLQEFLRRIQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +F  +  ++   +            IG D + E        E  +  + +      
Sbjct: 406 IISIVFQSMHFENFEAQISLRDKVNREKYIGSDENWE------KAEQAIIEACEEKGLKA 459

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                           E    +    K        +G  +  GT
Sbjct: 460 K------------------------------VEYGEAAFYGPKLDFMVKDAIGRRWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      + GAD + H  V +     G+M    AV+     GK  +W   + P
Sbjct: 490 IQVDYNLPERFQLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++++ I    +   D  +++   L +       D+  E+IG +    ++   P  +IV
Sbjct: 547 DQVAILPI---SEKFNDYAQEVKDYLKRYDVRAIVDERNEKIGRKIRDNEMKRIPYMLIV 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G K   + +V ++ +  G +  M  EE     +    N
Sbjct: 604 GEKEAENREVSVRKQGEGDQGTMKFEEFAKKVNEEVQN 641


>gi|291279885|ref|YP_003496720.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754587|dbj|BAI80964.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 640

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 164/441 (37%), Gaps = 44/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L +    +   G+  W P G +    + A  +EE  + G
Sbjct: 229 YLKRLEEAKKRDHRKLGKDLELFSTF-DEIGAGLICWFPKGARIRSIIEAFWKEEHFKNG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  + LW  SG    Y + M    D +       P +      I++S ++SY
Sbjct: 288 YEMLYTPHIGKSTLWETSGHLAFYQENMYSPMDIDGNEYFIKPMNCPFHIMIYKSKVRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++   +R E      G++R R F   DA+    T E       ++    LR+
Sbjct: 348 RDLPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHII-CTQEQIIDEIKEVLNFSLRM 406

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +   G +SI     + P   +G D   E    +  G              I     DF+ 
Sbjct: 407 WKAFGFESIKGYIATRPEKSVGDDAMWEKATQSLEG-------------AIKDSGIDFEI 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D++    +++    +    F    ++      T
Sbjct: 454 DEGGG----------AFYGPKIDLKIKDAIGREWQMTTIQFD----FNLPERF----DMT 495

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DGK+     +    +G++     V+   + G   IW   +AP ++ +IN+      
Sbjct: 496 YIDKDGKEKRPFMVHRALLGSLERFFGVLIEHYAGAFPIW---LAPIQVRIINV---SDA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C++I  +L + G  V +D   E+IG +   A L   P  +I+G+  V    V ++ 
Sbjct: 550 QYEYCKEIEKKLKEEGIRVEFDSRNEKIGYKIREAQLQKIPHMIIIGNNEVEAKTVSVRL 609

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R    + ++   E I+     
Sbjct: 610 RNGENKNNLDFYEYISVLKEL 630


>gi|257465911|ref|ZP_05630222.1| threonyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917067|ref|ZP_07913307.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690942|gb|EFS27777.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 637

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 163/445 (36%), Gaps = 50/445 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K FL +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R E 
Sbjct: 228 KDFLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMVLRNTLIDLWRAEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   +  +D      P +       F+  
Sbjct: 284 EKAGYVQIDTPIMLNRELWEISGHWFNYRENMYT-SSIDDVDFAIKPMNCPGGVLAFKYQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP    ++    R E      G+ R R F   D++ F +T E  +     +   
Sbjct: 343 QHSYRDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     + E    A+T            +F I   +  F 
Sbjct: 402 IDKFYSKLFGFQYSIELSTRPEKSIGTDEIWEKAETALAGALNHL-GREFKINEGDGAFY 460

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                  I                          K    R  + G I      ++LP   
Sbjct: 461 GPKLDFKI--------------------------KDAIGRTWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ I   
Sbjct: 492 DVTYIGEDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTIN-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKV 416
              C    +++ A+L   G     DD  E IG +   A+     P+QVI+G   +   +V
Sbjct: 547 -DECAPYAKEVVAQLKAQGIRAELDDRSESIGYKIREANGRYKIPMQVIIGKNEIEKREV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M L+  +      
Sbjct: 606 NVRRFGSQAQESMELDAFLAMVKEE 630


>gi|270293969|ref|ZP_06200171.1| threonyl-tRNA synthetase [Bacteroides sp. D20]
 gi|270275436|gb|EFA21296.1| threonyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 646

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 156/458 (34%), Gaps = 60/458 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q 
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +F  +  ++   +            IG D + E        E  +  + +      
Sbjct: 406 IISIVFESMDFENFEAQISLRDKVNREKYIGSDENWE------KAERAIIEACEEKGLKA 459

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                           E    +    K        +G  +  GT
Sbjct: 460 K------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      + GAD + H   M      G+M    AV+     GK  +W   + P
Sbjct: 490 IQVDYNLPERFQLEYTGADNQKHRPVMVHRAPFGSMERFVAVLIEHTAGKFPLW---LTP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++++ I    +   D   ++   L +       D+  E+IG +    ++   P  ++V
Sbjct: 547 DQVAILPI---SEKFNDYAHEVKQYLKRYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVV 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G K   + +V ++ +  G +  M  EE     +    N
Sbjct: 604 GEKEAENKEVAVRKQGEGDKGTMKFEEFAKKMNEEVQN 641


>gi|298373605|ref|ZP_06983594.1| threonine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274657|gb|EFI16209.1| threonine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 650

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 164/438 (37%), Gaps = 40/438 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T       KG+  WLP G      +   +++ Q R G  ++  P
Sbjct: 242 AKKRDHRKIGKELELFT-FSDMVGKGLPLWLPKGTDLRLRLENFLKKLQKRYGYQQVITP 300

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + +  L+V SG +  YGK+  +        +  +  P +     +I++S  KSY++LPF
Sbjct: 301 HIGAKQLYVTSGHWAKYGKDSFQPIQTPEEGEEYLLKPMNCPHHCEIYKSTPKSYKDLPF 360

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F   P+  K  + K+    L IF  L 
Sbjct: 361 RVAEFGTVYRYEQSGELHGLTRVRSFTQDDAHLF-CRPDQIKEEFIKVMEIILIIFKALR 419

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                  D  + + +   D       +   +      L ++V
Sbjct: 420 FDNFEAQISLR--------------DKVDREKYIGSDENWEKAENAIIEACRETGLKAVV 465

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
           E   A +                  K    R  ++G I      Y+LP      + GAD 
Sbjct: 466 EYGEAAFYGPKLDF---------MVKDALGRRWQLGTI---QVDYNLPERFELEYTGADN 513

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H  V +     G+M    AV+     GK  +W   + P +  ++ I    +   +  +
Sbjct: 514 QKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPEQAVVLPI---SEKFNEYAQ 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ +RL+ +      D   E+IG +    +L   P  +IVG+  +  + V ++ +  G +
Sbjct: 568 QVASRLNILDVRAIGDFRDEKIGRKIRDNELKHIPYLLIVGNDEMETNTVAVRRQGEGDK 627

Query: 427 EDMSLEEVINYASHRFSN 444
             M ++E     +   + 
Sbjct: 628 GKMKVDEFAKMINDEVNE 645


>gi|260495035|ref|ZP_05815164.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260197478|gb|EEW94996.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 567

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 118/225 (52%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERGFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDKEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 105/203 (51%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N    +             +   + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 364 DYHYKNINYGRDYTADIVADIRKVKVGENCITGGKLHSARGIECGQIFKLGDKYSKAMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+    G+ HY+ MG YGIG  R +AA IE  +D  GIIWP S+AP+ + +I +   ++ 
Sbjct: 424 TYLDEKGQSHYMLMGCYGIGVTRTMAAAIEQYNDENGIIWPVSIAPYIVDVIPVNIKNEA 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIY  L +   DV  DD  E+ G +F  ADL+GFP +V+VG K   + +VE+K 
Sbjct: 484 QVNLAEKIYNNLQEEKIDVMLDDRDEKPGFKFKDADLIGFPFKVVVGKK-AEEGRVELKI 542

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++S  E+IN       
Sbjct: 543 RKTGETFEISQNEIINKIKELMK 565


>gi|195578689|ref|XP_002079196.1| GD23818 [Drosophila simulans]
 gi|194191205|gb|EDX04781.1| GD23818 [Drosophila simulans]
          Length = 747

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 158/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   I+ E  + 
Sbjct: 334 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKR 393

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG ++ Y + M       +K     P +      IF +  +S
Sbjct: 394 GFQEVISPNIYNAKLWMTSGHWEHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 452

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 453 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKY 511

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 512 VYTIFGFSFQLV-LSTRPDNYLGELEQWNDAEKALAESLNEFGMPWKENPGDG------- 563

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 564 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 602

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 603 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 656

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 657 QYAQAVRDQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 716

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 717 DNKVHGEVSVAELITKLQK 735


>gi|195351005|ref|XP_002042027.1| GM26732 [Drosophila sechellia]
 gi|194123851|gb|EDW45894.1| GM26732 [Drosophila sechellia]
          Length = 747

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 158/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   I+ E  + 
Sbjct: 334 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKR 393

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG ++ Y + M       +K     P +      IF +  +S
Sbjct: 394 GFQEVISPNIYNAKLWMTSGHWEHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 452

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 453 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKY 511

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 512 VYTIFGFSFQLV-LSTRPDNYLGELEQWNDAEKALAESLNEFGMPWKENPGDG------- 563

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 564 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 602

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 603 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 656

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 657 QYAQAVRDQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 716

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 717 DNKVHGEVSVAELITKLQK 735


>gi|22325483|ref|NP_671778.1| EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA
           ligase/ ligase, forming aminoacyl-tRNA and related
           compounds / nucleotide binding / threonine-tRNA ligase
           [Arabidopsis thaliana]
 gi|330250779|gb|AEC05873.1| putative threonyl-tRNA synthetase, putative / threonine--tRNA
           ligase [Arabidopsis thaliana]
          Length = 650

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 154/449 (34%), Gaps = 40/449 (8%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G    + +    ++  
Sbjct: 239 QLKAYLHFKEEAKRRDHRRIGQDLDLFS-IQDEAGGGLVFWHPKGAIVRNIIEESWKKMH 297

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +  ADLW  SG  D Y + M    +  D+     P +      +++  
Sbjct: 298 VEHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQMEIEDELYQLRPMNCPYHILLYQRK 357

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 358 RQSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 416

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  R G     +   + P       +    A          K +             
Sbjct: 417 TEEILSRFGFNKYEVNLSTRPEKSVGGDDIWEKATCALRDALDDKGWSYEVDEGGG---- 472

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D+L    + S   ++    F    ++      
Sbjct: 473 ----------------AFYGPKIDLKIEDALGRKWQCSTIQVD----FNLPQRF----DI 508

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +  K   + +    +G++     V+   + G   +W   ++P ++ ++ +  +  
Sbjct: 509 TYVDTNSDKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLW---LSPVQVRVLPVTDN-- 563

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C+++  +L   G        GE++      A+    PL  +VG K V    V ++
Sbjct: 564 -QLEFCKEVSKKLRACGVRAEL-CHGERLPKLIRNAETQKIPLMAVVGPKEVETGTVTVR 621

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R  G    + ++++IN  +        +
Sbjct: 622 SRFGGELGTIPVDDLINKINIAVETRTAL 650


>gi|167630335|ref|YP_001680834.1| prolyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|226701294|sp|B0THP0|SYP_HELMI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167593075|gb|ABZ84823.1| prolyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 575

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 109/232 (46%), Positives = 152/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P L+E P +AE+ SH+L+LR G I + S G+Y +LPLGQ+ L  + AI+REE
Sbjct: 1   MRMSRLFAPTLREIPAEAEVISHQLLLRAGFIRRSSAGVYHYLPLGQRVLQRIMAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q A++W++SGR+  YG E+ RL DR+ +     PTHEE +TD+ ++
Sbjct: 61  MNAAGGQELLMPIIQPAEIWLQSGRWHVYGDELFRLKDRHQRDFCLSPTHEESITDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   Y I  K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 NVSSYRDLPMLLYHITNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLHESYMKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF R GL   P+ A+ G IGG   SHEF+VLA++GE ++          
Sbjct: 181 YVNIFRRCGLTFRPVEADPGAIGGTGGSHEFMVLAESGEAEIVYCDACDYAA 232



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 96/176 (54%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     ARGIEVG +F  GTKYS  ++ TF    G+++ + MG YG+G  R +AA 
Sbjct: 392 CPQCGAPLKKARGIEVGQVFKLGTKYSKALNCTFLDEKGQENLMVMGCYGVGVSRTMAAA 451

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE +HD  GI+WP ++APF++ ++ +   D    +A E IY  L   G D   DD  E+ 
Sbjct: 452 IEQNHDDNGIVWPMAIAPFQVLVVPVSNKDAAQMEAAEAIYKELIAKGVDTLLDDRPERA 511

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F  ADL+G P+++ VG+K  SD  VE+K R  G +   S E+V+         
Sbjct: 512 GVKFKDADLIGIPVRITVGNKLASDGVVEVKLRRGGEQFTASREDVVAQVQALIRE 567


>gi|158523204|ref|YP_001531074.1| threonyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|238686905|sp|A9A078|SYT_DESOH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|158512030|gb|ABW68997.1| threonyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 637

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 146/442 (33%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +   H+ + G+  + P G K  + +    R E    G
Sbjct: 227 YLTLIEEAKKRDHRKLGAELDLFS--FHEEAAGMPFFHPNGMKLWNALLDYWRLEHRAAG 284

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG +++Y + M  ++  +D      P +      +++    SY
Sbjct: 285 YVEVKTPVMLDRALWEKSGHWENYRENMY-VSVIDDNQYAIKPMNCPGGMLLYKEKRYSY 343

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +I L  R EL     G+ R R F   DA+ F +TP+  +     +      I
Sbjct: 344 RDLPLRVAEIGLVHRHELSGVLSGLFRVRAFHQDDAHIF-MTPDQIEQEIFGVLKLVETI 402

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL    +   + P     + E  V A  G      +          +   +   I 
Sbjct: 403 YSTFGLGF-HLELSTRPAKSIGTDEQWVKATAGLRAALDAYGKGYAVNEGDGAFYGPKID 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +                             K    R  + G I             ++  
Sbjct: 462 V---------------------------HIKDALGRTWQCGTI-QLDMSLPERFDLSYID 493

Query: 305 A-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A   K   V +     G++     ++     GK  +W   +AP +  L+ +         
Sbjct: 494 AGSEKQRPVMIHRVIYGSIERFLGILIEHFAGKFPLW---LAPTQAVLLPLNDD---MIP 547

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++     + G     DD  E +  +   A +   PL + +G K      + ++    
Sbjct: 548 YAREVRQEFEQAGIRTEIDDRSESLNKKVRQAQIDKIPLIITLGGKEKEARTLSVRTLDG 607

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            +R  +S E     A    +  
Sbjct: 608 QVRHGVSHEAFFAVAKEHIAKR 629


>gi|95930704|ref|ZP_01313437.1| prolyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95133184|gb|EAT14850.1| prolyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 571

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y LP L+ENP DAEI SH+LM+R GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRLTEYLLPTLKENPADAEIVSHQLMMRAGMIRKVAAGIYTYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +  A LW ESGR++ YGKE+LR+ DR D     GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAMELLMPMVVPAGLWEESGRWEQYGKELLRIRDRKDTEFCLGPTHEEVITDVVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFDL   G+  +Y KM+ +
Sbjct: 121 TVRSYRQLPLNLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDLEDAGADTAYEKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK   + A++G IGG  SHEF+VLA++GE  +          
Sbjct: 181 YQRIFKRCGLKFRAVEADTGNIGGSSSHEFMVLAESGEDAIVSCDQCDYAA 231



 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 2/183 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              +  D  P         RGIEVGH+F  GTKYS  + AT   A+GK+  + MG YGIG
Sbjct: 384 RQAQAGDGCPRCDGTLQMWRGIEVGHVFKLGTKYSEALGATVLNAEGKEAPLVMGCYGIG 443

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VAA IE +HD +G+I+P  +APF++ +  +   D+    A  ++Y +L   G +V 
Sbjct: 444 IGRTVAAAIEQNHDDQGVIFPMPIAPFQVIITLLNPKDEQVMQAGSELYQQLMDAGVEVL 503

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+ GS+F  A+L+G P++V VG++ + +   E++ RL G R  M + E +++   
Sbjct: 504 LDDRDERPGSKFKDAELIGIPIRVTVGNRALKEGAFEVQKRLEGERMMMPVAETLSWLVD 563

Query: 441 RFS 443
              
Sbjct: 564 EVK 566


>gi|20429011|emb|CAC79651.1| threonyl-tRNA synthetase [Oryza sativa Japonica Group]
          Length = 531

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 166/449 (36%), Gaps = 43/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 122 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 177

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y + M    +   +     P +      +F
Sbjct: 178 QQYRDRGYQEVLSPNIYNMQLWETSGHAANYKENMFVF-EIEKQEFGLKPMNCPGHCLMF 236

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +
Sbjct: 237 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRESQIKDEVKAV 295

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P       E    A+   T+              +  
Sbjct: 296 LDFINYVYEIFGFKY-ELELSTRPEKYLGDIETWNKAEQQLTEALNEFGKPWQINEGDG- 353

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  +FD+L    + +   ++    F    ++ L 
Sbjct: 354 -------------------AFYGPKIDIGVFDALKRKFQCATLQLD----FQLPLRFKLT 390

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +     +  V +    +G++  + A++   ++GK   WP  ++P +  + +I ++
Sbjct: 391 YSA--EDEAKLERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSISSN 445

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++  R+ + G  V  D+    I  +   A L  F   ++VG++     +V 
Sbjct: 446 S---VEYAKQVRVRIHEAGFHVAIDETDRTIQKKVREAQLAQFKYILVVGAQEAETGQVS 502

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R       +S++++I       +  +
Sbjct: 503 VRVRDKAELATVSIDDIITRFKEEVAAYK 531


>gi|126663528|ref|ZP_01734525.1| threonine--tRNA ligase (threonine tRNA synthetase) [Flavobacteria
           bacterium BAL38]
 gi|126624476|gb|EAZ95167.1| threonine--tRNA ligase (threonine tRNA synthetase) [Flavobacteria
           bacterium BAL38]
          Length = 633

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 167/447 (37%), Gaps = 43/447 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L      +  +G+  WLP G    D +   +++ Q + G
Sbjct: 216 YLELLEEAKRRDHRKLGKELDLFH-FSPKVGQGLPLWLPKGAALRDRLEQFLKKAQKKAG 274

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   DL+V SG Y  YG +  +        +  +  P +     +I+ +   
Sbjct: 275 YEQVVTPHIGMKDLYVTSGHYAKYGADSFQPIHTPAEGEEFLLKPMNCPHHCEIYNARPW 334

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +    L
Sbjct: 335 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDTEFKNVIDLVL 393

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG ++   +     +                 +   S +  +    +  +   D 
Sbjct: 394 YVFGSLGFENFTAQVSVRDLD-------------NPDKYIGSVENWEKAENAIISAAKDK 440

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
                I     A Y    D   +              R  ++G I      Y+LP     
Sbjct: 441 GLNYVIEAGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPERFEL 487

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+KG+D K H  V +     G+M    A++     G   IW   + P +  ++++    +
Sbjct: 488 TYKGSDDKLHRPVMIHRAPFGSMERFIAILLEHTAGNFPIW---LMPEQAIILSL---SE 541

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +K+   L         D+  E IG +   A++  +P  +IVG +   +  + ++
Sbjct: 542 KYENYAKKVLDLLENHEIRALIDNRNETIGKKIREAEMNKYPFMLIVGEEEEKNGTISVR 601

Query: 420 HRLTGIREDMSL--EEVINYASHRFSN 444
            R    + ++S+  E+     +   + 
Sbjct: 602 QRGQEGKGNISVTIEQFAAMINEEINK 628


>gi|301768134|ref|XP_002919483.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
          Length = 723

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 154/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVSPNIYNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAI-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G     +   + P       E    A+                 P +      
Sbjct: 484 RTVYNVFGFSF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWELNPGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENFGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +       V  D D G  +  +   A L  +   +++G K  +   V I+ 
Sbjct: 631 DEYAQKVRQQFHDAKFTVDIDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 691 RDNKVHGERTISETIERLQQLKQSR 715


>gi|167763511|ref|ZP_02435638.1| hypothetical protein BACSTE_01885 [Bacteroides stercoris ATCC
           43183]
 gi|167698805|gb|EDS15384.1| hypothetical protein BACSTE_01885 [Bacteroides stercoris ATCC
           43183]
          Length = 646

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 157/458 (34%), Gaps = 60/458 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q 
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGAALRIRLQEFLRRIQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +F  +  ++   +            IG D + E        E  +  +        
Sbjct: 406 IISIVFQSMHFENFEAQISLRDKVNREKYIGSDENWE------KAEQAIIEA-------- 451

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                           E    +    K        +G  +  GT
Sbjct: 452 ----------------------CEEKGLKARVEYGEAAFYGPKLDFMVKDAIGRRWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      + GAD + H  V +     G+M    AV+     GK  +W   + P
Sbjct: 490 IQVDYNLPERFQLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++++ I    +   D  +++   L +       D+  E+IG +    ++   P  +IV
Sbjct: 547 DQVAILPI---SEKFNDYAQEVKDYLKRYDVRAIVDERNEKIGRKIRDNEMKRIPYMLIV 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G K   + +V ++ +  G +  M  E+     +    N
Sbjct: 604 GEKEAENREVSVRKQGEGDQGTMKFEDFAKKVNEEVQN 641


>gi|126725645|ref|ZP_01741487.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704849|gb|EBA03940.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 649

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 146/429 (34%), Gaps = 45/429 (10%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A    H+ + R      + + + G   W P G +    +   +R +Q   G +E++ P 
Sbjct: 243 EAAKRDHRKLGRDMDLFHMQEEAPGQVFWHPNGWRIYTTLQDFMRRKQVAGGYVEVNTPQ 302

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNL 128
           +    LW  SG ++ Y + M  +    + A         P +      IF   +KSYR+L
Sbjct: 303 VVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNVGLKSYRDL 362

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R E      G+MR R F   D + F       +            I+  
Sbjct: 363 PIRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIF-CEESQIEEETAIYIEFLTSIYKD 421

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           LG ++  ++    P     S E    A+T       +        P E   +   +    
Sbjct: 422 LGFENFRVKFSDRPEVRAGSDEVWDRAETALLNATRAAGIEPEMNPGEGAFYGPKLEFVL 481

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                                D++  + +     ++    F    +    + A + G DG
Sbjct: 482 T--------------------DAIGRDWQCGTHQVD----FVLPER----LDANYVGQDG 513

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   V +    +G+      ++   H GK   W   +AP ++ + +I        D  +
Sbjct: 514 AKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW---LAPRQVVVASIVTD---ANDYAQ 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ A L   G     D   E+I  +     L   P+ + VG K V++  V ++       
Sbjct: 568 EVVAELRAAGVLAEADIRNEKINYKVREHSLGKVPVILAVGMKEVAERTVSVRRLGQKQS 627

Query: 427 EDMSLEEVI 435
               L EV+
Sbjct: 628 TVQELGEVV 636


>gi|229918663|ref|YP_002887309.1| prolyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|229470092|gb|ACQ71864.1| prolyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 569

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 153/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE  SH+L++R G I Q++ GIYS+LPLG K L N+  IIREE
Sbjct: 4   MKQSRLLMPTLREVPADAEAVSHQLLVRGGFIRQNAAGIYSYLPLGHKVLHNIQTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW E+GR+  YG E++RL DR+D+    G THEE++T I R 
Sbjct: 64  MNRAGAQELLMPAIQPAELWEETGRWGIYGPELMRLTDRHDRRFALGATHEELITSIVRD 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REFLMKDAYSF  T E     Y  M+ +
Sbjct: 124 ELNSYKKLPMNLYQIQTKYRDERRPRFGLLRGREFLMKDAYSFHATQEDLDEEYTNMYNA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  +HEF  LAD GE  +  +       
Sbjct: 184 YSRIFDRTGLKYRPVVADSGAIGGKDTHEFQALADIGEDTIVYTDTSNYAA 234



 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 69/165 (41%), Positives = 101/165 (61%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG +F  GT+YS  M ATF   +G+   + MG YGIG  R ++A++E  HD +GI+
Sbjct: 405 RGIEVGQVFKLGTRYSEAMGATFLNEEGRAEPLIMGCYGIGVSRTLSAIVEQHHDDRGIV 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + LI I A D+   +   ++Y  L +   DV +DD  E+ G +FA ADL+G
Sbjct: 465 WPRNVAPFDLHLIAINAKDETQVELANRLYEELGQT-YDVLFDDRKERAGVKFADADLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            P++V VG K   +  VE+K R TG   + S++E+    + +FS 
Sbjct: 524 LPIRVNVGKK-AGEGIVEVKVRATGEVIETSIDELKEVIASKFSE 567


>gi|75676225|ref|YP_318646.1| threonyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|74421095|gb|ABA05294.1| Ser-tRNA(Thr) hydrolase [Nitrobacter winogradskyi Nb-255]
          Length = 686

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 141/446 (31%), Gaps = 45/446 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G      V A +R       
Sbjct: 256 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWTIFQAVIAYMRRRLAE-D 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M           + +     P +      +F+ 
Sbjct: 313 YDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKH 372

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T E       K+  
Sbjct: 373 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEEQLADECLKINE 431

Query: 180 SYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  +   G    + ++  + P     S      A+     V                 
Sbjct: 432 LILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLK--------------- 476

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
                S N I  +      A      E +       +    R  + G        ++LP 
Sbjct: 477 -HIAASNNRIRTETNPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLPE 526

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              A +  ADG K   V +     G++     ++     G   +W   +AP +  +  I 
Sbjct: 527 RFGAFYIDADGGKKAPVMVHRAICGSIERFIGILIEHFAGHFPLW---LAPVQAVVTTIT 583

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      +  + + +   + G  V  D   E+I  +     L   P  ++VG K      
Sbjct: 584 SDGD---EYAKVVASAARRAGLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETQS 640

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V I+   +  ++     E I      
Sbjct: 641 VSIRRLGSDGQKVTPTGEAIAALVAE 666


>gi|107021665|ref|YP_619992.1| prolyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|123072438|sp|Q1BZD6|SYP_BURCA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|105891854|gb|ABF75019.1| prolyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADVRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGITRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +      + R+  +K+YA L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDMVRETADKLYAELVAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + + K+E + R       + 
Sbjct: 532 HRLVIGERGLKEGKIEYQGRRDAEATLLP 560


>gi|116495184|ref|YP_806918.1| threonyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122263399|sp|Q037Z6|SYT_LACC3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116105334|gb|ABJ70476.1| Ser-tRNA(Thr) hydrolase [Lactobacillus casei ATCC 334]
          Length = 657

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 164/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +    D  +    L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 235 EAAEHDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYEHVY 292

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+  SG +D Y ++M    D  D  M+   P +      I+  HI+SYR LP
Sbjct: 293 TPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELP 352

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 353 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFKKILRLIMDVYEDF 411

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S      D + L+  
Sbjct: 412 NITDYSFRLSYR--------------DPKNTEKYFDDDEMWTRSQSMLKGAMDDLKLD-- 455

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++    F    +++L    T+ G DG+
Sbjct: 456 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----TYVGKDGE 507

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  LI +   + +  D   +
Sbjct: 508 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPTQAVLIPVN--NDLHLDYVNR 562

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++       E
Sbjct: 563 IKKQMLVAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDEHTE 622

Query: 428 DMSLEEVINYASHRFSNN 445
           + +    I+       N 
Sbjct: 623 EEAGNMFIDALVAEVKNY 640


>gi|299783724|gb|ADJ41722.1| Threonyl-tRNA synthase [Lactobacillus fermentum CECT 5716]
          Length = 601

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 162/436 (37%), Gaps = 36/436 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  W+P G      +   + +++   G   + 
Sbjct: 192 EARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGSTIRRTIERYVIDKEVGDGYEHVY 249

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + + +  SG +D Y ++M    D  D  ++   P +      I++ HI+SYR LP
Sbjct: 250 TPVLMNLNAYKTSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYKHHIRSYRELP 309

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 310 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIQDEFAKILKLIMDVYKDF 368

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ + + D M     S      D + L+  
Sbjct: 369 NINDYTFRLSYR--------------DPKNTEKYFANDEMWERSQSMLKAAMDSMGLD-- 412

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++    F    K+       + G DGK
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPEKF----DLHYVGEDGK 464

Query: 309 DHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ G M    A +   + G    W   +AP ++++I +   D+   D  + 
Sbjct: 465 QHRPIMIHRGVVGTMERFVAYLTEIYKGAFPTW---LAPNQVNIIPVS--DEKHGDYADD 519

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +             D   E++G +   +     P  ++VG   V++  V ++      + 
Sbjct: 520 LAREFRAAQLRTVVDHRSEKMGYKIRESQTQKVPYTLVVGEDEVANGTVSVRKYGEKDQV 579

Query: 428 DMSLEEVINYASHRFS 443
            MS ++ ++   H  +
Sbjct: 580 SMSKQDFLDLILHDVA 595


>gi|237744663|ref|ZP_04575144.1| threonyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431892|gb|EEO42104.1| threonyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 637

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 164/433 (37%), Gaps = 46/433 (10%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ +   L    + ++  G   +LP G    + +  + R+E  +   +++  P 
Sbjct: 236 EAEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLVDLWRKEHEKAEYLQLETPI 295

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +LW  SG + +Y + M   ++ ++      P +       F+  + SY++LP    
Sbjct: 296 MLNKELWEISGHWFNYRENMYT-SEIDEVEFAIKPMNCPGGVLAFKHQLHSYKDLPARLA 354

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++    R E      G+MR R F   D++ F +TPE  +     +     + + +L    
Sbjct: 355 ELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPEQVQDEIIGVVNLIDKFYSKLFGFE 413

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P     S E   +A++                P +   +   +         
Sbjct: 414 YEIELSTKPEKAIGSQEIWDMAESALAGALDKLGRKYKINPGDGAFYGPKLDFK------ 467

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH 310
                                 K    R  + G I      ++LP     T+ G DG+ H
Sbjct: 468 ---------------------IKDAIGRMWQCGTI---QLDFNLPERFDVTYIGEDGEKH 503

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++     ++   + G   +W   +AP ++ ++ I      C    ++I 
Sbjct: 504 RPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVMTIN---DECVPYAKEIM 557

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I+   +  +  
Sbjct: 558 AKLDELGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNIRRFGSKDQFS 617

Query: 429 MSLEEVINYASHR 441
            SL+E  NY    
Sbjct: 618 KSLDEFYNYVVDE 630


>gi|116688611|ref|YP_834234.1| prolyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|170731910|ref|YP_001763857.1| prolyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|152016591|sp|A0K4B4|SYP_BURCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699124|sp|B1JVA5|SYP_BURCC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116646700|gb|ABK07341.1| prolyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|169815152|gb|ACA89735.1| prolyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 578

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADVRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGITRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +      + R+  +K+YA L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDMVRETADKLYAELVAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + + K+E + R       + 
Sbjct: 532 HRLVIGERGLKEGKIEYQGRRDAEATLLP 560


>gi|209521097|ref|ZP_03269827.1| prolyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209498480|gb|EDZ98605.1| prolyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 578

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIISHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQADFVMGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKD+YSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDSYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A++G IGG  SHEF V+AD GE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADNGSIGGSGSHEFHVIADIGEDAIAYC 224



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 11/227 (4%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + S   D+        +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGSNEVDYH----TTGVNWGRDLPEPVVADIRNVKKGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M+AT     GK   ++MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMNATCLDETGKPRPMEMGCYGIGITRILGAAIEQNFDEKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +        R+  +K+YA L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDAVREQADKLYAELVAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRFSN 444
            ++++G + + D K+E + R       + +E+    VI+      +N
Sbjct: 532 HRLVIGDRGLKDGKIEYQGRRDTEATLLPVEDAAQTVIDKVRAALAN 578


>gi|147677598|ref|YP_001211813.1| prolyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|189083504|sp|A5D2U6|SYP_PELTS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146273695|dbj|BAF59444.1| prolyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 570

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 116/278 (41%), Positives = 163/278 (58%), Gaps = 3/278 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P L+E P +AE+ SH+L+LR G I + + G+Y++LPL  + +  +  I+REE
Sbjct: 1   MRASELFSPTLREVPAEAEVVSHQLLLRAGFIRRAAAGVYTYLPLAMRVIKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A++W ESGR+D YG E+ RL DR+D+    GPTHEE++T + R 
Sbjct: 61  MDRQGGQELLMPIIQPAEIWQESGRWDVYGPELFRLKDRHDRDFALGPTHEEIITVLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   EG   SY KM+ +
Sbjct: 121 EVSSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEEGLNVSYMKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK---DFMDFPIPSENT 237
           Y R+F R GL   P+ A+SG IGG  +HEF+VLA++GE  V             +     
Sbjct: 181 YTRVFQRCGLHFRPVEADSGAIGGSDTHEFMVLAESGEATVLYCDGNGCDYAANVEKAAL 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            F +  +   +             V     F  +P  K
Sbjct: 241 PFKERRTEEEMRPVAARETPGCRSVEEVCGFLGVPARK 278



 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 2/225 (0%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSA 279
             +       + +      D   L ++           +D+   +  +  P        A
Sbjct: 345 IIADPEAAAAVNAVTGANRDDTHLINVNPGRDFKIDLVADIRMVQAGEPCPRCGAGLKEA 404

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG IF  G KYS  + A++    G+   V MG YGIG  R +AA IE +HD  GII
Sbjct: 405 KGIEVGQIFKLGDKYSRALGASYLDEKGQSRPVIMGCYGIGITRTMAAAIEQNHDRDGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+APF + +I +   D       E++Y+RL   G +   DD  E+ G +F  ADL+G
Sbjct: 465 WPASIAPFHVVVIPVNVKDGGQYAMAEEVYSRLWAAGIEAVLDDRTERAGVKFKDADLIG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +PL++ +G+K V +  VEI+ R  G    + + E+          
Sbjct: 525 YPLRITIGAKAVEEKLVEIRIRKNGETVFVPMNELEEKVEDMLKE 569


>gi|326795786|ref|YP_004313606.1| prolyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326546550|gb|ADZ91770.1| Prolyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 577

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 114/260 (43%), Positives = 164/260 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L++ P DA + SH+LM+R GMI Q SKG+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRASNYLFSTLRDAPTDAVVTSHQLMVRAGMIRQISKGLYTWLPTGLRVLKKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+++    GPTHEEV+T++ R+
Sbjct: 61  MEKAGALEVMMPGVQPAELWEESGRWQKYGPELLRMKDRHNRDYCLGPTHEEVITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF    +  + +Y+ M  +
Sbjct: 121 ELTSYKQLPINFFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHSNSDSLRQTYDVMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R+GL   P++A++G IGG  SHEF VLA +GE  +  S                
Sbjct: 181 YCNVFDRIGLDYRPVQADTGSIGGAYSHEFHVLAQSGEDDIAFSDSSEFAANVELAEAVC 240

Query: 241 DIISLNSIVEQWTAPYAATS 260
              S ++  ++ +  +    
Sbjct: 241 SKKSPDTPTQEVSEEFTPDC 260



 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 3/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           D   +  +          T D+ N    D  P+ +      RGIEVGHIF  G +YS  +
Sbjct: 370 DDYHVTGLNWDRDITDFETKDIRNVVEGDPSPDGEGHIVIKRGIEVGHIFQLGQQYSEAL 429

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
            A+    +GK   + MG YGIG  R+VAA IE + D KGI+WP+S+ PF +++I +    
Sbjct: 430 RASVLDENGKAQTMWMGCYGIGVSRIVAAAIEQNFDDKGILWPESITPFSVAIIAMNYDK 489

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  RD C+ +Y  L ++G DV  DD  E+ G +FA  +LLG P +++VG K + ++ +E
Sbjct: 490 SEAVRDECDHLYNELKQLGIDVLLDDRKERPGVKFADCELLGIPHRLVVGDKGLKNNSLE 549

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            K+R TG  ED+  +E + +       N
Sbjct: 550 YKYRKTGEGEDVPKDEAVKFIRKVLQAN 577


>gi|157803434|ref|YP_001491983.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|166225493|sp|A8EXW5|SYT_RICCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157784697|gb|ABV73198.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 635

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 155/442 (35%), Gaps = 49/442 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R        + ++G+  W   G    + V   IR++  +
Sbjct: 231 YLFMLEE----AEKRDHRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNIVEQYIRKKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG ++ +   M  L + ++K +   P +      IF+  IK
Sbjct: 287 NGYTEVKTPVLVDKRLWEASGHWEKFRDNMFAL-EADNKILALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F    E              
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCA-EEQITDETVSFCKLLT 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++    P     S E    A+    +      F     P E   +   
Sbjct: 405 EVYKDFGFTDIKVKFSDRPEIRAGSDEVWDKAENALKEAVEKAGFTYTLNPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL--PMSA 300
           +                                    R  + G        + L   + A
Sbjct: 465 LEFVLTD---------------------------AIGRQWQCGT---LQMDFVLLEQLDA 494

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++  A G K   V +    +G++     ++   + G   +W   +AP ++++  I +   
Sbjct: 495 SYVAASGEKKRPVMLHRAILGSLERFIGILIEEYAGCFPLW---LAPVQVAIATITSD-- 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D    +   L   G     +   ++I  +         PL  I+G K   + +V I+
Sbjct: 550 -LNDYALAVQKALIDNGVRTDINISPDKINYKIREFSNHKVPLIAIIGKKEKENKQVTIR 608

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              T  ++ +S++++I   S  
Sbjct: 609 RLGTTDQQVLSVKQLITLISEE 630


>gi|78065148|ref|YP_367917.1| prolyl-tRNA synthetase [Burkholderia sp. 383]
 gi|114152177|sp|Q39JU3|SYP_BURS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77965893|gb|ABB07273.1| Prolyl-tRNA synthetase [Burkholderia sp. 383]
          Length = 578

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPDVADVRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +      + R+  +K+YA L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDMVRETADKLYAELVAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + + K+E + R       + 
Sbjct: 532 HRLVIGERGLKEGKIEYQGRRDAEATLLP 560


>gi|307731045|ref|YP_003908269.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307585580|gb|ADN58978.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 578

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYC 224



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + S   D+        +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGSNEVDYH----TTGVNWGRDLPEPVVADIRNVKKGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M+AT    +GK   ++MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMNATCLDENGKPQPMEMGCYGIGITRILGAAIEQNFDEKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     +  R+  +K+Y +L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSEAVREQADKLYTQLVDAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D K+E + R       + ++E       +  
Sbjct: 532 HRLVIGDRGLKDGKLEYQGRRDAEATLLPVDEAAQAVIAKVR 573


>gi|262065930|ref|ZP_06025542.1| proline--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291380410|gb|EFE87928.1| proline--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 567

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 154/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR  MI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLQDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 95/169 (56%), Gaps = 1/169 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D
Sbjct: 398 KLHSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNND 457

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GIIWP S+AP+ + +I     ++      EKIY  L     DV  DD  E+ G +F  
Sbjct: 458 ENGIIWPVSIAPYIVDVIPANIKNEGQVSLAEKIYNELQAENIDVMLDDRDEKPGFKFKD 517

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ADL+GFP +V+VG +   +  VE+K R TG   +++  EV+        
Sbjct: 518 ADLIGFPFKVVVGKR-ADEGIVEVKIRRTGETLELAQAEVVAKIKELMK 565


>gi|170699968|ref|ZP_02890995.1| prolyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170135116|gb|EDT03417.1| prolyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 578

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +           +DV + K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLSEPEVADVRDVKKGDPSPDGKGTIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +      + R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDMVREAADKLYAELAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       +  +E     + +  
Sbjct: 532 HRLVIGERGLKEGKIEYQGRRDAEATLLPADEAAATVTEKIR 573


>gi|291404015|ref|XP_002718268.1| PREDICTED: threonyl-tRNA synthetase-like 2-like [Oryctolagus
           cuniculus]
          Length = 709

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 157/442 (35%), Gaps = 44/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + +       H  S G   +LP G      +  +IREE ++
Sbjct: 293 MMKTWEQVQEEAKNRDHRKIGKEQELFFFHDVSPGSCFFLPRGAFVYSTLMDLIREEYHK 352

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +E+  P + ++ LW  SG +  Y + M        +     P +      +F    +
Sbjct: 353 RDFLEVLSPNVYNSKLWETSGHWQHYSENMFTFRVEK-ETFALKPMNCPGHCLMFAHRPR 411

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R +P  F    +  R+EL     G+ R R F   DA+ F  T E  +           
Sbjct: 412 SWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQ 470

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 471 SVYSTFGFTF-QLNLSTRPENFLGESEMWAEAEKQLQNSLVEFGKPWKLNPGDG------ 523

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L    T+
Sbjct: 524 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TY 561

Query: 303 KGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG  K   V +    +G++  + A++  +  GK   WP  ++P ++ +I +      
Sbjct: 562 VSKDGDDKKRPVIIHRATLGSVERMVAILSENCGGK---WPLWLSPRQVMVIPVGP---T 615

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C     ++Y    + G     D D    +  +   A L  +   ++VG K ++++ V ++
Sbjct: 616 CEKYALQVYNEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEMANNAVNVR 675

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R   I  ++S+   I    + 
Sbjct: 676 TRDNKIHGEISVISAIEKLKNL 697


>gi|257452295|ref|ZP_05617594.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317058838|ref|ZP_07923323.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313684514|gb|EFS21349.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 637

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 164/445 (36%), Gaps = 50/445 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K FL +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R E 
Sbjct: 228 KDFLRLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMVLRNTLIDLWRAEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   +  +D      P +       F+  
Sbjct: 284 EKAGYVQIDTPIMLNRELWEISGHWFNYRENMYT-SSIDDVDFAIKPMNCPGGVLAFKYQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP    ++    R E      G+ R R F   D++ F +T E  +     +   
Sbjct: 343 QHSYRDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     + E    A+T            +F I   +  F 
Sbjct: 402 IDKFYSKLFGFQYSIELSTRPEKSIGTDEIWEKAETALAGALNHL-GREFKINEGDGAFY 460

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                  I                          K    R  + G I      ++LP   
Sbjct: 461 GPKLDFKI--------------------------KDAIGRTWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ I   
Sbjct: 492 DVTYIGEDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTIN-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKV 416
              C    +++ A+L + G     DD  E IG +   A+     P+QVI+G   +   +V
Sbjct: 547 -DECAPYAKEVVAQLKEQGIRAELDDRSESIGYKIREANGRYKIPMQVIIGKNEIEKREV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M L+  +      
Sbjct: 606 NVRRFGSQAQESMELDAFLAMVKEE 630


>gi|312134482|ref|YP_004001820.1| prolyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774533|gb|ADQ04020.1| prolyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 572

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 160/265 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQELHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRELPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
             +  N   ++    Y        E
Sbjct: 241 TPVENNEKPKEKQEVYTPNVKTIEE 265



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +  TD+   I   ++ +     +A   ++  + L       K    RGIEV
Sbjct: 349 KYLKNFVVGANKTDYH--IKNVNLSDFKVTKFADLRNITQDDLCPKCRSQKVTIERGIEV 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKY+      +    G+   + MG YGIG  R  AA+IE  HD  GIIWP +V
Sbjct: 407 GHIFKLGTKYTEAFGCVYTDEKGEKKLMIMGCYGIGINRTAAAIIEQMHDEDGIIWPITV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +   D+       +IY  L K G +V  DD  E+ G +F  ADL+G P +V
Sbjct: 467 APYEVIVVPVNIKDENQHKIAFEIYENLQKNGIEVLIDDRDERAGVKFKDADLIGIPFRV 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            VG K VS+ K+EI++R T    ++ ++  + +  +     + 
Sbjct: 527 TVGKK-VSEGKLEIRNRRTKETFEVEIDNAVEFIMNLIKQEKA 568


>gi|302063985|ref|ZP_07255526.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
          Length = 590

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 136/400 (34%), Gaps = 44/400 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTQSES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A++       S        P E   +   I 
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +                            K    R  + G        ++LP  +SA +
Sbjct: 467 FSL---------------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  + + V +    +G+      ++   ++G    W   +AP +  ++NI       
Sbjct: 497 VSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            D   ++   L++ G     D   E+IG +     LL  P
Sbjct: 551 ADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVP 590


>gi|227534800|ref|ZP_03964849.1| threonyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187556|gb|EEI67623.1| threonyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 674

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 167/443 (37%), Gaps = 40/443 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +    D  +    L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 252 EAAEHDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYEHVY 309

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+  SG +D Y ++M    D  D  M+   P +      I+  HI+SYR LP
Sbjct: 310 TPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELP 369

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 370 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFKKILRLIMDVYEDF 428

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S      D + L+  
Sbjct: 429 NITDYSFRLSYR--------------DPKNTEKYFDDDEMWTRSQSMLKGAMDDLKLD-- 472

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++    F    +++L    T+ G DG+
Sbjct: 473 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----TYVGKDGE 524

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  LI +   + +  D   +
Sbjct: 525 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPTQAVLIPVN--NDLHLDYVNR 579

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT---- 423
           I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++        
Sbjct: 580 IKKQMLVAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDEHTK 639

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
               +M ++ ++    +   + +
Sbjct: 640 EEAGNMFIDALVAEVKNYSRDGK 662


>gi|195114918|ref|XP_002002014.1| GI17149 [Drosophila mojavensis]
 gi|193912589|gb|EDW11456.1| GI17149 [Drosophila mojavensis]
          Length = 691

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +  +IR E  + 
Sbjct: 278 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMNLIRGEYRKR 337

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y   M       +K     P +      IF +  +S
Sbjct: 338 GFQEVISPNIYNAKLWMTSGHWQHYADNMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 396

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 397 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLDFLRH 455

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       +    A+    +            P +        
Sbjct: 456 VYTIFGFSFQLV-LSTRPDKYLGELDQWDAAEKALAESLNEFGMPWKENPGDG------- 507

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L     + 
Sbjct: 508 -------------AFYGPKIDITIMDALKRPFQCATIQLD----FQLPIRFNL----NYI 546

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +        
Sbjct: 547 ADDGEKRRPVIIHRAILGSVERMIAILTENYAGK---WPFWLSPRQVMVVPVGP---AYD 600

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  + +   L   G     D D G+ +  +   A L  F   ++VG K  S   V ++ R
Sbjct: 601 EYAKTVRDELYAAGFMSEVDCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSKTVNVRTR 660

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I+    
Sbjct: 661 DNKVHGEVSVAELISKLQK 679


>gi|124265710|ref|YP_001019714.1| prolyl-tRNA synthetase [Methylibium petroleiphilum PM1]
 gi|152112930|sp|A2SD40|SYP_METPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124258485|gb|ABM93479.1| prolyl-tRNA synthetase [Methylibium petroleiphilum PM1]
          Length = 581

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIYS++P+G + +  V AIIREE
Sbjct: 1   MKASQFFVSTLKEAPADAEITSHKLMMRAGMIKRLGAGIYSYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++  G E++R+ DR+D+  I  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRFEKMGPELMRVKDRHDRDFIIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FY IQ KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELRSYRQLPKNFYHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAAAGRSYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A++G IGGD SHEF V+A+TGE  +   
Sbjct: 181 YGRIFDRFGLSYRAVAADTGAIGGDRSHEFQVIAETGEDAIVYC 224



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
               DF   + + DF                 A   D+ N  + D  P+ K      RGI
Sbjct: 362 AHMGDFVCGANDADFHYTGVNWGRDLPEPDLVA---DIRNAVVGDPSPDGKGVLAIQRGI 418

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+FY GTKYS  M+AT+    GK   ++MG YGIG  R++ A IE  HD +GI+WP 
Sbjct: 419 EVGHVFYLGTKYSAAMNATYLDETGKPRLMEMGCYGIGVTRILGAAIEQRHDARGIVWPT 478

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ +  I        R A + ++  L  +G D+  DD GE+ G+ FA  +L+G P
Sbjct: 479 AIAPFEVVICPIGYDRSAEVRQAADTLHDELQALGMDLMLDDRGERPGAMFADWELIGIP 538

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V++  + + + +VE++ R       +++ EV+     R  +
Sbjct: 539 QRVVISDRGLKEGQVELQGRQEAEAGKLAVAEVVAQLRARLRD 581


>gi|116070824|ref|ZP_01468093.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. BL107]
 gi|116066229|gb|EAU71986.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. BL107]
          Length = 615

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 154/444 (34%), Gaps = 41/444 (9%)

Query: 12  QENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +    +A    H+ + +   +     +   G+  W P G +    +    R+     G  
Sbjct: 199 KRRKAEALRRDHRRLGKDLDLFSIEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYE 258

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +  P +    LW  SG  D Y + M      +++     P +       + S ++SYR 
Sbjct: 259 LLYTPHVADISLWKTSGHLDFYAESMFGPMQVDEREYQLKPMNCPFHVLTYASKLRSYRE 318

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  + ++   +R E      G+MR R F   DA+ F L P+       ++     RI  
Sbjct: 319 LPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PDQISDEILRILDLTERILS 377

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
                +  +   + P     S     LA  G T+    K +                   
Sbjct: 378 TFDFNNYEINLSTRPEKSIGSEAVWDLATKGLTEALERKGWNYKIDEGGG---------- 427

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                     A      + K+ D++    + S   ++      FG  Y           D
Sbjct: 428 ----------AFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFGLDYVAA--------D 469

Query: 307 G-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G K   + +     G++     ++  ++ G    W   +AP +I L+ +       +   
Sbjct: 470 GSKQQPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVTDD---VQPYA 523

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E++  +L   G     D  G+++G      + +  P+  ++G+K    + V ++ R  G 
Sbjct: 524 EQLLDQLKTAGIRATIDQSGDRLGKIIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGD 583

Query: 426 REDMSLEEVINYASHRFSNNRPVL 449
               S++ ++N A    +  +P L
Sbjct: 584 LGVTSVDALLNAAKWANTERQPGL 607


>gi|308272327|emb|CBX28933.1| Threonyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 637

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 146/443 (32%), Gaps = 41/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   R+       L L +   H  + G+  + P G    + + +  + E    G
Sbjct: 227 YLHFIEEAKKRNHRKIGMVLDLFS--FHDEAPGMPFFHPKGMSVWEALISYWKIEHRAAG 284

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E   P + +  LW  SG +++Y + M   +  ++      P +      +F     SY
Sbjct: 285 YVETKTPIMLNRSLWERSGHWENYRENMYT-SVVDETEYAIKPMNCPGGMLLFGMKPHSY 343

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +I L  R EL     G+ R R F   DA+ F +TPE  +     +     RI
Sbjct: 344 KDLPLRSAEIGLVHRHELSGVLSGLFRVRAFHQDDAHIF-MTPEQIESEILGVLKLVERI 402

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL    +   + P     + E   +A  G      +          +   +   I 
Sbjct: 403 YSTFGLSF-HLELSTRPEKSIGNDEQWAVATKGLESALKTYGVDYKTNEGDGAFYGPKID 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +                             K    R  + G +             ++  
Sbjct: 462 I---------------------------HIKDALGRTWQCGTV-QLDMALPERFDLSYID 493

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    + +     G++     ++     GK  +W   +AP + +L+ I         
Sbjct: 494 KNNEKCRPIMIHRVIYGSIERFFGILIEHFAGKFPLW---MAPVQAALLPIN---DELIP 547

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               I   L K G     D   E +  +   A L   PL +  G K +    V +++   
Sbjct: 548 YAAGIRDVLEKEGIRTELDSRTESLKKKIRDAQLSYVPLIITCGPKEMESGTVSVRNLSG 607

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
            I+  +++E+ +     +    +
Sbjct: 608 KIKYGVTIEDFVKIVLFQIKERK 630


>gi|89897864|ref|YP_514974.1| threonyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123722330|sp|Q256F9|SYT_CHLFF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89331236|dbj|BAE80829.1| threoninyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 635

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 156/447 (34%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +    + S G+  + P G    D +    +  
Sbjct: 221 KELKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRL 278

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L +  LW  SG + +Y + M  L   +++     P +       +++
Sbjct: 279 HQLAGYKEILTPQLVNRSLWEVSGHWSNYKENMYTLK-IDEEDYAIKPMNCPGCMLYYKT 337

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SY+  P    +I    R E+     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 338 RLHSYKEFPLRIAEIGHVHRYEISGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILN 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL+   +   + P      S E   LA     +   + +      P +   
Sbjct: 397 LVSELYSTFGLEY-HLELSTRPEKATIGSDELWDLATAALERALINSNTPFVINPGDGAF 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 456 YGPKIDI---------------------------HVKDAIQRTWQCGTI-QLDMFLPERF 487

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A G K   + +     G++     ++     G+  +W   ++P  + LI +   
Sbjct: 488 ELEYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHVRLITVADR 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      +++     ++G  V  DD  E +  +   A  +     V +G + + ++ + 
Sbjct: 545 HQ---PRAQELATAWQQLGFVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEENTLA 601

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R   +  +M+++  IN      ++
Sbjct: 602 VRTRDNRVLNNMTIDTFINTILEEKNS 628


>gi|19703946|ref|NP_603508.1| threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|22654111|sp|Q8RFS6|SYT_FUSNN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19714122|gb|AAL94807.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 620

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 166/447 (37%), Gaps = 50/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R K+ L +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R 
Sbjct: 209 RLKHHLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMIVRNVLIDLWRR 264

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  ++  P + + +LW  SG + +Y + M   ++ ++      P +       F+
Sbjct: 265 EHEKAGYQQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLAFK 323

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     + 
Sbjct: 324 HQLHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVV 382

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               + + +L      +   + P     S E   +A+                 P +   
Sbjct: 383 NLIDKFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAEAALAGALDKLGRKYKINPGDGAF 442

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               K    R  + G I      ++LP 
Sbjct: 443 YGPKLDFK---------------------------IKDAIGRMWQCGTI---QLDFNLPE 472

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ + 
Sbjct: 473 RFDVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTLN 529

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDS 414
                C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + 
Sbjct: 530 ---DECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENK 586

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
           +V I+   +  +    L+E   Y    
Sbjct: 587 EVNIRRFGSKDQFSKLLDEFYTYVVDE 613


>gi|281341862|gb|EFB17446.1| hypothetical protein PANDA_008118 [Ailuropoda melanoleuca]
          Length = 678

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 154/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 261 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYR 320

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 321 KRGFQEVVSPNIYNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 379

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 380 RSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAI-EQIEDEIKGCLDFL 438

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G     +   + P       E    A+                 P +      
Sbjct: 439 RTVYNVFGFSF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWELNPGDG----- 492

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 493 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 531

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +      C
Sbjct: 532 SHDGDDKKRPVIVHRAILGSVERMIAILTENFGGK---WPFWLSPRQVMVVPVGP---TC 585

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +       V  D D G  +  +   A L  +   +++G K  +   V I+ 
Sbjct: 586 DEYAQKVRQQFHDAKFTVDIDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTVNIRT 645

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 646 RDNKVHGERTISETIERLQQLKQSR 670


>gi|212704422|ref|ZP_03312550.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
 gi|212672143|gb|EEB32626.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
          Length = 648

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 153/441 (34%), Gaps = 41/441 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L  L+E  R D      +L   T      + G+  WLP G      +    R E
Sbjct: 229 KALNAYLKQLEEAKRRDHRKLGRELGFFTFH-EDVAPGMVFWLPKGMMMRTILEDFWRRE 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +     +  P L   + W  SG YD Y + M      +D+  I  P +      I+R+
Sbjct: 288 HIKRNYDLVQGPQLLRVETWQRSGHYDHYRQNMYFTQIEDDQYGI-KPMNCISHMLIYRN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP  ++++ +  R E      G++R R+F   DA+    TPE  +     +  
Sbjct: 347 DLRSYRDLPQRYFELGVVHRHEKSGTLHGLLRVRQFTQDDAHIL-CTPEQLEGEILGVIH 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               + H  G     +   + P     + E   LA     +     D        +    
Sbjct: 406 LIRDLMHLFGFDY-KVGISTRPKDSIGTDEAWELATNALIEAVKKADMPYEINEGDG--- 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + +L D +    + S   ++    F    ++     
Sbjct: 462 -----------------AFYGPKIDVRLLDCIGREWQCSTIQVD----FTLPERF----D 496

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ G DG+ H   M     +G++     V+   + G    W   +AP +  ++ +    
Sbjct: 497 LTYVGQDGERHRPVMVHRAIMGSLERFIGVLIEQYAGAMPTW---LAPEQARILTVT--- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +A  K    L  +G  V  D   E++G +   A L   P  ++VG K      V +
Sbjct: 551 DAHNEAALKACEELKALGIRVTADTRNEKLGFKVREAQLAKVPYILVVGEKEAQAGGVNV 610

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           + R        S+ EV     
Sbjct: 611 RLRNGDNLGLKSVAEVAALIR 631


>gi|162147243|ref|YP_001601704.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544293|ref|YP_002276522.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|189083610|sp|A9HFP5|SYT_GLUDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161785820|emb|CAP55391.1| Threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531970|gb|ACI51907.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 641

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/431 (21%), Positives = 150/431 (34%), Gaps = 49/431 (11%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L  L+E    AE   H+ + R      I + + G   W P G +    +   +R  Q R 
Sbjct: 233 LHRLEE----AERRDHRRIGREMDLFHIQEEAVGSIFWHPKGWRLYTALQDYMRRAQTRG 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           G  E+  P L    LW  SG +D Y + M     +  DK +   P +      IFR  ++
Sbjct: 289 GYQEVRTPQLVDRALWEASGHWDKYREHMFIATVEDEDKTLALKPMNCPCHVQIFRHGLR 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +     R E      G+MR R F   DA+ F  T         +      
Sbjct: 349 SYRELPLRMAEFGACHRYEPSGALHGIMRVRSFTQDDAHIF-CTESQIAAETARFVRMLA 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG +S  ++    P     S E    A+    +            P E   +   
Sbjct: 408 EVYADLGFESFRVKFADRPEQRAGSDETWDRAEGALIEACRLAGVEYEYNPGEGAFYGPK 467

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               +    R  + G        Y LP  + A
Sbjct: 468 LEF---------------------------VLRDAIGRDWQCGT---LQVDYVLPERLDA 497

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +F G D   H  V +    +G+      ++   H G+  +W   +AP ++ + +I     
Sbjct: 498 SFVGEDSARHRPVMLHRAILGSFERFLGILIEQHAGRFPLW---LAPVQVVVASIVTD-- 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E++   L++ G  V  D   E+I ++     L   P+ ++VG K   D  V I+
Sbjct: 553 -AAPYAEQVAETLTQAGLVVETDIRNEKINAKVREHSLARVPVILVVGRKEAEDGTVAIR 611

Query: 420 HRLTGIREDMS 430
                 +E MS
Sbjct: 612 RLGGAAQEVMS 622


>gi|297835784|ref|XP_002885774.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331614|gb|EFH62033.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 650

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 153/449 (34%), Gaps = 40/449 (8%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G    + +    ++  
Sbjct: 239 QLKAYLHFKEEAKRRDHRRIGQDLDLFS-IQDEAGGGLVFWHPKGAIVRNIIEESWKKMH 297

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +  ADLW  SG  D Y + M    +  D+     P +      +++  
Sbjct: 298 VEHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQMEIEDELYQLRPMNCPYHILLYQRK 357

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 358 RQSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 416

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  R G     +   + P       +    A          K +             
Sbjct: 417 TEEILSRFGFNKYEVNLSTRPEKSVGDDDIWEKATCALRDALDDKGWSYEVDEGGG---- 472

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D+L    + S   ++    F    ++      
Sbjct: 473 ----------------AFYGPKIDLKIEDALGRKWQCSTIQVD----FNLPQRF----DI 508

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +  K   + +    +G++     V+   + G   +W   ++P ++ ++ +  +  
Sbjct: 509 TYVDTNSDKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLW---LSPIQVRVLPVTDN-- 563

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C+++  +L   G        GE++      A+    PL  +VG K V    V ++
Sbjct: 564 -QLEFCKEVSKKLRACGVRAEL-CHGERLPKLIRNAETQKIPLMAVVGPKEVETGTVTVR 621

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R  G    + +++ IN  +        +
Sbjct: 622 SRFGGELGTIPVDDFINKINIAVETRTAL 650


>gi|295696152|ref|YP_003589390.1| prolyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295411754|gb|ADG06246.1| prolyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 567

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/232 (52%), Positives = 165/232 (71%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+  L+E P +AE+ SH+LMLR GMI Q   G+YS+LPLG + L  + AI+REE
Sbjct: 1   MRQSHFFVQTLREVPAEAEVPSHRLMLRAGMIRQVVSGVYSYLPLGYRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A LW ESGR+D YGKE+LR  DR+ + ++ GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLLPAVQPASLWQESGRWDDYGKELLRFEDRHQRMLVLGPTHEEVITDLVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T YQIQ KFRDE+RPRFGVMR+REF+MKDAYSFD+  EG   SY  M+ +
Sbjct: 121 EVRSYRQLPMTLYQIQTKFRDEVRPRFGVMRAREFIMKDAYSFDVDEEGLDRSYRAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R GL+   ++A+ G IGG+  SHEF+VL++ GE  +          
Sbjct: 181 YEQIFRRCGLEFRVVQADPGAIGGEGGSHEFMVLSEVGEDTILVCPACDYAA 232



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/166 (42%), Positives = 99/166 (59%), Gaps = 1/166 (0%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIEVGH+F  GTKYS  +SA+F    G    V MG YGIG  R++AA +E  HD KGI
Sbjct: 402 YRGIEVGHVFKLGTKYSEALSASFLDERGVQRPVIMGCYGIGVSRLIAAAVEQHHDDKGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP  +APF + ++ +   D   RDA E++  RL   G +V  DD  E+ G +F  ADL+
Sbjct: 462 MWPMPIAPFHVHVLPVNLKDAAQRDAAEQLCTRLEDAGIEVLLDDRDERPGVKFNDADLM 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P+Q+IVG + +S+  VE+K R TG    +S +E +  A     +
Sbjct: 522 GIPIQLIVGKR-ISEGLVEMKRRKTGEVTLLSPDEAVRAAVEAVRS 566


>gi|171316236|ref|ZP_02905459.1| prolyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171098650|gb|EDT43447.1| prolyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 578

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV + K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADVRDVKKGDPSPDGKGTIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D +GIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGVTRILGAAIEQNFDDRGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +      + R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDMVREAADKLYAELTAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       +  +E     + +  
Sbjct: 532 HRLVIGERGLKEGKIEYQGRRDAEATLLPADEAAATVTEKIR 573


>gi|226355500|ref|YP_002785240.1| threonyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|259516378|sp|C1D0W2|SYT_DEIDV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226317490|gb|ACO45486.1| putative threonine--tRNA ligase (threonyl-tRNA synthetase)
           [Deinococcus deserti VCD115]
          Length = 649

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 166/448 (37%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L  L+E  R D      +L L T  I     KG+  WLP G    + +   ++E+Q R 
Sbjct: 237 YLHQLEEAKRRDHRKLGRELELFT--IDPLVGKGLPLWLPNGTVLREELAGFLKEQQFRR 294

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + +L+  SG Y  Y        + +D+  +  P +      I+ S  +S
Sbjct: 295 GYQGVITPNIGNLELYKTSGHYPYYADGQFNPIEVDDEQYMLKPMNCPHHVRIYASKPRS 354

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    +R E      G+ R R F   DA+ F   P+  K  +  +    + 
Sbjct: 355 YRDLPVRLAEFGTVYRYEQSGELNGLTRVRGFTQDDAHLF-CRPDQLKKEFLDVLDLTVL 413

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G+  +  R  +     D         +  E Q+  + D +  P            
Sbjct: 414 VLKTFGMNDVRFRVGTRDPESDKYVGDEANWELAERQILEAVDEVGLP------------ 461

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
                       Y                  K V  R  ++G I      Y+LP     +
Sbjct: 462 ------------YTIEPGDAAFYGPKLDFVVKDVLGREWQLGTI---QVDYNLPERFDIS 506

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+DH  + +     G++     ++   + G   +W   +AP ++ +I I      
Sbjct: 507 YVGEDGQDHRPIMIHRAPFGSLERFVGILIEHYAGDFPLW---LAPRQVMIIPIA---DR 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  E++ + L   G     DD   ++ ++   A+L   P+ +IVG K     +V ++ 
Sbjct: 561 HNEYAEELRSELHAAGLRAEVDDSSNRMQAKVRTAELSKIPVMLIVGDKEQEARQVSVRE 620

Query: 421 R---LTGIREDMSLEEVINYASHRFSNN 445
           R       R+ ++ +++      R+   
Sbjct: 621 RSVEGHKERKGVAFDDLCAELLERYRAR 648


>gi|297620271|ref|YP_003708408.1| Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375572|gb|ADI37402.1| Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 642

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 151/446 (33%), Gaps = 46/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD  +   KL L +    + + G+    P G      +   +RE     
Sbjct: 227 EYLHQMEEAKKRDHRVIGSKLDLFS--FKEEAAGMPFIHPKGMTVWTELTNYLRECLGSA 284

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             +E+  P + S  LW  SG + +Y + M   ++  D      P +       ++SH+ S
Sbjct: 285 NYVEIKTPIMLSRGLWETSGHWFNYRENMFT-SEIEDHDYAIKPMNCPGCMLYYKSHVHS 343

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +I    R E      G+ R R F   DA+ F + P   +     +   + +
Sbjct: 344 YRELPLRVAEIGNVHRYEPSGALSGLFRVRSFHQDDAHIF-MKPSDIEGEILSLLNLFEK 402

Query: 184 IFHRLGLKS---IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++   GL     +  R E G IG D   E    A  G       K   D+ I   +  F 
Sbjct: 403 LYSTFGLSYHLELSTRPEKGTIGTDEEWE---QATAGLKNAL-DKWGHDYKINEGDGAFY 458

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I +                             R  + G I           + 
Sbjct: 459 GPKIDFHIRD--------------------------AINRTWQCGTI-QLDMALPQRFAL 491

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +DG+ H  V +     G++     ++     GK  +W   ++P +  ++ +    +
Sbjct: 492 EYTASDGERHRPVMLHRAIFGSIERFMGILIEHFAGKFPLW---ISPLQARILTVADRHE 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++  +L + G  V  D  GE +  +   A L      + VG K +    + ++
Sbjct: 549 ---PYAHELMQKLKQQGFRVDIDATGESVSKKVRTAQLTQINYILTVGDKEMEHKTLNLR 605

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R   +  ++ LE  I          
Sbjct: 606 TRDNVVHGEIDLEAFIIALKKEKEER 631


>gi|260892490|ref|YP_003238587.1| prolyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260864631|gb|ACX51737.1| prolyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 574

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/224 (48%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + + +P L+E P +AE+ASH+L+LR G I + + GIY+ LPLG++ L  + +I+REE
Sbjct: 1   MRLTTWLVPTLREVPAEAEVASHRLLLRAGFIRRVAAGIYTLLPLGKRVLAKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G  E+ +P LQ A+LW  SGR++ YG E+ RL DR+ +    GPTHEE++T +  +
Sbjct: 61  MNRAGGQEILMPILQPAELWHRSGRWEVYGPELFRLKDRHGRDFCLGPTHEEMITALVAA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  K+RDE RPRFG++R REF+MKD YSFD    G + SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIGNKYRDERRPRFGLLRGREFIMKDLYSFDRDWAGLEESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R+F R+GL    + A++G IGG +SHEF+ LAD GE  V   
Sbjct: 181 YTRVFTRVGLNFRAVEADTGAIGGSVSHEFMALADAGEAVVVYC 224



 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 68/185 (36%), Positives = 102/185 (55%), Gaps = 3/185 (1%)

Query: 263 HNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 D  P   +   S RGIEVG IF  G KYS  ++A +    G+   + MG YGIG
Sbjct: 384 RQVSEGDPCPRCGQPLLSVRGIEVGQIFQLGDKYSRALNAYYLDEKGEKRPIIMGCYGIG 443

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AAV+E  HD +GIIWP +VAPF++ ++ +   +   R+  E+IY  L + G +V 
Sbjct: 444 ITRTMAAVVEQHHDEEGIIWPLAVAPFQVLVLPVNYEEVPQREVAEEIYNLLREKGIEVL 503

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+ G +F  ADL+G+PL++ VG +  ++ KVE+K R TG    +  +EV+   + 
Sbjct: 504 LDDREERPGVKFKDADLVGYPLRITVG-RHAAEGKVELKLRRTGETWLVDKDEVLEKVAA 562

Query: 441 RFSNN 445
                
Sbjct: 563 FLEGK 567


>gi|212639527|ref|YP_002316047.1| prolyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212561007|gb|ACJ34062.1| Prolyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 568

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/298 (40%), Positives = 170/298 (57%), Gaps = 5/298 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+L+LR G I Q++ G+YS+LPLG++ L  + AIIREE
Sbjct: 5   MKQSMSFIPTLREVPADAEIKSHQLLLRAGFIRQNASGVYSFLPLGKRVLQKIEAIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ A+LW ESGR+ SYG E++RL DR+++    G THEEV+T + R 
Sbjct: 65  MERAGAVELLMPALQQAELWQESGRWYSYGPELMRLKDRHERDFALGATHEEVITALVRD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     YNKM+ +
Sbjct: 125 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASHESLDEVYNKMYEA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL    + A+SG +GG  +HEF+VL+D GE  +  S                
Sbjct: 185 YANVFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDSSDYAANIEMAPVIT 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                +         +        E         ++     +     F    +Y L +
Sbjct: 245 TYERSDEPHAPLEKVHTPEQRTIEEVSQFLQVPKEKCIKSLL-----FKVDDRYVLVL 297



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 3/208 (1%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKY 294
              ++       V       A  +DV   +  D  P+ K      RGIEVGH+F  GT+Y
Sbjct: 362 CGANEAHYHYKGVNPDRDFVAQYADVRFIQEGDPSPDGKGTIRFARGIEVGHVFKLGTRY 421

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S  M+AT+   +G+   + MG YGIG  R +AA+ E  +D  G+IWP +VAPF + LI++
Sbjct: 422 SEAMNATYLDENGRTQPMIMGCYGIGVSRTLAAIAEQYNDEHGLIWPTAVAPFHVHLISV 481

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  R+  ++ Y +L + G +V +DD  E+ G +FA +DL+G P++V VG +  S+ 
Sbjct: 482 NPKVDEQRELADEWYVQLQQEGFEVLYDDRAERPGVKFADSDLIGLPVRVTVGKR-ASEG 540

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            VE+K R TG  E++ + +++       
Sbjct: 541 IVEVKVRKTGETEEVHVSQLVETLRRYL 568


>gi|294788637|ref|ZP_06753879.1| proline--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483514|gb|EFG31199.1| proline--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 571

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 118/226 (52%), Positives = 157/226 (69%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEATLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +QSADLW ESGR+  YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRVGCVELLMPVIQSADLWKESGRWQFYGDELLRITDRHDNEFCFSPTCEEMITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS-KHSYNKMFV 179
            I SY+ LP  FY I  KFRDE RPRFGVMR+REF+MKDAYSF    E   +  Y  M+ 
Sbjct: 121 EINSYKQLPKNFYHINTKFRDERRPRFGVMRAREFVMKDAYSFHADFESLVRDGYQPMYD 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +Y RIF+RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 AYCRIFNRLGLNFRPVAADTGSIGGTGSHEFQVLADSGEDVIAYSD 226



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 110/235 (46%), Gaps = 3/235 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +           D            A      D+ N    D  P
Sbjct: 337 LGPVGFKGKVYADFATEKGADWVIGANQDDYHYTGFNFGRDAAEPEFVDLRNVVAGDPSP 396

Query: 273 ENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                   ARGIEVGH+F   TKYS  M+ATF   +GK   ++MG YGIG  RVVAA IE
Sbjct: 397 CGSGSLKLARGIEVGHVFQLRTKYSEAMNATFLDNNGKSQIMEMGCYGIGVTRVVAAAIE 456

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW D++APF + ++ +        + A +KI+A L   G DV  DD  E+ G
Sbjct: 457 QNNDEKGIIWTDAMAPFTVVIVPMNYKKSADVKAAADKIHAELLAQGVDVLLDDRDERAG 516

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              A ++LLG P ++++G + + +  VE   R  G  + +++ E++    +  + 
Sbjct: 517 VLLADSELLGIPHRIVIGDRALKEGNVEYAERKVGESQSIAVNEIVGKIKNVLAK 571


>gi|294783936|ref|ZP_06749258.1| proline--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294479748|gb|EFG27527.1| proline--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 567

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 153/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SHKLMLR  MI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIVSHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S 
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD 225



 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 96/169 (56%), Gaps = 1/169 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGIG  R +AA IE ++D
Sbjct: 398 KLHSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNND 457

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GIIWP S+AP+ + +I     ++      EKIY  L     DV  DD  E+ G +F  
Sbjct: 458 ENGIIWPVSIAPYIVDVIPANIKNEGQVSLAEKIYNELQAEDIDVMLDDRDEKPGFKFKD 517

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ADL+GFP +V+VG + V +  VE+K R TG   ++S  EV+        
Sbjct: 518 ADLIGFPFKVVVGKR-VDEGIVEVKIRRTGETLEVSESEVVAKIKELMK 565


>gi|303278011|ref|XP_003058299.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460956|gb|EEH58250.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 698

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 143/431 (33%), Gaps = 38/431 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  W P G    + +    ++     G   +  
Sbjct: 295 EAARRDHRKIGKELNLFSIQQEEVGGGLVFWHPKGALMRNIIENFWKDIHMARGYDLLYT 354

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +   DLW  SG  D Y + M +  D  D+     P +      +++    SYR+LP  
Sbjct: 355 PHVGKLDLWKTSGHADFYAENMYKPMDVEDETYQLKPMNCPFHVAVYKDGYFSYRDLPIR 414

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+ R R F   DA+ F L P+        +      I    G 
Sbjct: 415 WAEMGTVYRYERSGTMHGLFRVRGFTQDDAHIFCL-PDQIADEIKGVLDLTEDILSTFGF 473

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P       E    A+    +    K +                       
Sbjct: 474 TEFEVNLSTKPEKSVGGPEIWDKAEGALKEALAVKGWDYEVDEGGG-------------- 519

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KD 309
                 A      + K+ D++    + S   ++    F    ++      T+   +  K 
Sbjct: 520 ------AFYGPKIDIKILDAIGRKWQCSTVQLD----FNLPERF----ELTYIDEENSKR 565

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +     G++     ++  ++ G   +W   +AP ++ L+ +           E+  
Sbjct: 566 RPIMIHRAIFGSLERFYGILTENYAGAFPLW---IAPTQVRLLPVT---DAVTPYVEETV 619

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           AR+   G  V      E++      A+    P+  +VG +   D  + ++    G    +
Sbjct: 620 ARMKAAGVRVDV-TSKERLAKLVRNAEKQKVPVMCVVGEQEAKDGTLAVRTYADGDVGVI 678

Query: 430 SLEEVINYASH 440
           +++EVI     
Sbjct: 679 TVDEVIARLEA 689


>gi|158336193|ref|YP_001517367.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158306434|gb|ABW28051.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 616

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 158/453 (34%), Gaps = 45/453 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAII 57
           ++ K +L   +E    A+   H+L+   L+   I      G+  W P G +    +    
Sbjct: 203 KQLKAYLHQKEE----AQRRDHRLLGKNLKLFSIEDNAGGGLVFWHPRGARIRQVIETYW 258

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           R+   + G   +  P + + DLW  SG +D Y   M    +   +A    P +       
Sbjct: 259 RQAHTQGGYELLYTPHMANLDLWKTSGHFDFYRDSMFDQMEVETQAYQIKPMNCPFHVLT 318

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++  + SYR  P  + ++   +R E      G+MR R F   DA+ F L P+        
Sbjct: 319 YQHDLHSYREFPLRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCL-PDQVADEILA 377

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +      +    G +   +   + P     S E   LA          K +         
Sbjct: 378 VLDLTETVLSDFGFRDYEVNLSTRPDKSVGSDEIWDLATQDLRTALDRKGWEYLTDEGGG 437

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + K+ D++    + S   ++    F    ++  
Sbjct: 438 --------------------AFYGPKIDLKIRDAIGRLWQCSTIQVD----FNLPERF-- 471

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG     + +     G++     ++  ++ G   +W   +AP +I L+ + 
Sbjct: 472 --KMEYVAADGTRQRPIMIHRAIFGSLERFFGILIENYAGDFPLW---LAPVQIRLLVV- 525

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 R    ++  +L + G     D  GE++G Q   + L   P+  +VG K V    
Sbjct: 526 --SDAQRPYALEVLEQLQQKGFRAEIDQTGERLGKQIRQSALEKIPVVAVVGQKEVEAQT 583

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + I+ R +  +E + L E+           + +
Sbjct: 584 LNIRTRHSEEQELLKLPELCEKMQSAIDAKQHI 616


>gi|172059576|ref|YP_001807228.1| prolyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|226699123|sp|B1YSV1|SYP_BURA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171992093|gb|ACB63012.1| prolyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 578

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYC 224



 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   D+     +  +      P    +DV + K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPEVADVRDVKKGDPSPDGKGTIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YG+G  R++ A IE + D +GIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATFLDESGKPQPMLMGCYGVGVTRILGAAIEQNFDDRGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +      + R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDMVREAADKLYAELAAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       +  +E     + +  
Sbjct: 532 HRLVIGERGLKEGKIEYQGRRDAEATLLPADEAAATVTEKIR 573


>gi|295106076|emb|CBL03619.1| prolyl-tRNA synthetase, family II [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 585

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 164/237 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E+P DAEIASHKL+LR GMI + + G+Y++LPLG++ L  V  I+REE
Sbjct: 7   MRMSELCVPTLKEDPTDAEIASHKLLLRAGMIRKTASGVYTFLPLGKRVLAKVERIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 67  MDAIGSQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITALVRN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF  + E  + +Y+ M  +
Sbjct: 127 ELRSYKELPLTLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHASQESLQKTYDDMSAA 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RI  R+ +   P+ A+SG IGG ++ EF+ LA+ GE ++            + + 
Sbjct: 187 YGRICERMDMDYRPVEADSGQIGGSVTCEFMALAEAGEAELVHCACGWAANAEAGDC 243



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 115/231 (49%), Gaps = 2/231 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +           +D                  +D+   +  DS P+    
Sbjct: 341 EAARVIAARSLQAVPKWVVGANEDGYHYVGAQLGVDFKVDEWADLCIVQPGDSCPKCGLP 400

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIEV  +F  G KYS  M ATF   DG +    MG YG+G  R +AA++E  +D 
Sbjct: 401 LEGARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMGCYGVGVSRTMAAIVEQHNDE 460

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI WP SVAP  + ++ +   D   + A EK+   L+K+G +V  DD  E+ G +FA A
Sbjct: 461 NGIAWPFSVAPAHVCVLPLTVGDDEVQPAAEKLAGDLAKLGLEVVIDDRKERAGVKFADA 520

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G+PLQV+VG + +++ KVEIKHR TG R D+SL  + +  +    N +
Sbjct: 521 DLVGWPLQVVVGKRGLAEGKVEIKHRKTGARRDISLMALTDAVAFAQRNTK 571


>gi|332885366|gb|EGK05615.1| threonyl-tRNA synthetase [Dysgonomonas mossii DSM 22836]
          Length = 650

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 159/454 (35%), Gaps = 49/454 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      +L L         KG+  WLP G +    +   +++ 
Sbjct: 226 KMLDEYLVMLEEAKKRDHRKIGKELELFA-FSENVGKGLPLWLPRGTQLRLKLEDFLKKI 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q +    ++  P + S  L+V SG Y  YG++  +        +  +  P +     +I+
Sbjct: 285 QKKFEYQQVMTPHIGSKLLYVTSGHYAKYGQDSFQPIHTPEEGEEFLLKPMNCPHHCEIY 344

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   +SYR+LP    +    +R E      G+ R R F   DA+ F  TPE  K  + K+
Sbjct: 345 KIVPRSYRDLPLRMAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPEQLKEEFLKV 403

Query: 178 FVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                 IF  L  ++   +     P   +         +  E  +  + +    P     
Sbjct: 404 MDIVFIIFKALNFENFEAQISLRDPNNREKYIGSDANWEKAERAIIEACEEKGLPA---- 459

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---K 293
                                       E    +    K        +G  +  GT    
Sbjct: 460 --------------------------RVELGEAAFYGPKLDFMVKDALGRRWQLGTIQVD 493

Query: 294 YSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           Y+LP      + GAD + H  V +     G+M    AV+     GK  +W   +AP ++ 
Sbjct: 494 YNLPERFELEYTGADNQKHRPVMIHRAPFGSMERFIAVLIEHTAGKFPLW---LAPDQVV 550

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ I    +   D   ++     + G     DD  E+IG +    +L   P  +IVG K 
Sbjct: 551 ILPI---SEKFNDYAHRVSHYFKQQGISSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKE 607

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               +V I+ +  G +  M         +     
Sbjct: 608 AESEEVSIRKQGDGDKGSMKFVNFAAQLNEEMEQ 641


>gi|121610033|ref|YP_997840.1| threonyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|166225514|sp|A1WMG5|SYT_VEREI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121554673|gb|ABM58822.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Verminephrobacter eiseniae EF01-2]
          Length = 639

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 159/450 (35%), Gaps = 49/450 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L +L+E    AE   H+ + R      I +HS G   W P G      V   +R   
Sbjct: 229 QQYLTMLEE----AEKRDHRKLGRELDLFHIDEHSPGTVFWHPKGWTLWQEVEQYMRRVY 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +    LW ++G +D Y + M  + +   +     P +      IF+  
Sbjct: 285 RDNGYQEVKGPQILDQGLWEKTGHWDKYRENMF-VTESEKRDYALKPMNCPGHIIIFKQG 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP  F +     R+E      G+MR R F   D + F  T +  +         
Sbjct: 344 IKSYRDLPLRFGEFGQCHRNEPSGGLHGIMRVRAFTQDDGHIF-CTAQQIQSEILAFTAL 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++   G   I  +  + P     + E    A+    Q   +       +P E   + 
Sbjct: 403 VQKVYRDFGFTDIIYKLATRPEKHIGTEESWDQAEHALAQGLRASGCEFEYLPGEGAFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                               K    R  + G I          + A
Sbjct: 463 PKVEYTL---------------------------KDALGRQWQCGTI-QVDPNMPERLDA 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F G DG  H  + +    +G++     ++   H G    W   +AP +++L+NI    +
Sbjct: 495 EFVGEDGARHRPIMLHRAIVGSLERFIGILLEQHAGALPAW---LAPVQLALLNIT---E 548

Query: 360 VCRDACEKIYARLSKV----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              D C +I A++ K     G  +  D   E+I  +     +   P  ++ G K  +   
Sbjct: 549 AQSDYCREIAAKMQKALSHLGLRLLLDLRNEKITYKIREHSMQKLPYILVAGDKERAAGA 608

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R  G    MS++  I   +   S  
Sbjct: 609 VAVRARGHGDLGVMSVDAFIERIADEISTK 638


>gi|304387349|ref|ZP_07369541.1| proline--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304338600|gb|EFM04718.1| proline--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 599

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 365 LGPVGFAGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 424

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 425 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 484

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 485 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 545 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 598


>gi|260881838|ref|ZP_05893576.1| proline--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260847809|gb|EEX67816.1| proline--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 571

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L+  P +AEIASH+LM R GMI + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRASNLYAPTLRNTPAEAEIASHQLMYRAGMIRKTAGGMYTFLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+ W ESGR+ +YG EM+R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAEFWQESGRWGAYGDEMMRIKDRHGRDFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MRSREF+MKD YSFD   EG   SY KM+ +
Sbjct: 121 EVRSYKELPLMLYQIQDKFRDERRPRFGLMRSREFIMKDLYSFDKDVEGMNESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GL+  P+ A++G IGG  SHEF VLAD GE+ +          
Sbjct: 181 YTNIFTRMGLEFRPVEADNGAIGGGHSHEFTVLADAGESNIAVCTKCDYAA 231



 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 3/232 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             +T V      M+        +  D+   N +    +       +D+   K  D  P  
Sbjct: 339 KKDTHVLVDATVMNMHNAVTGANEVDVHYKNVNPQRDFDKDAIIVTDLRMVKEGDPCPHC 398

Query: 275 K--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  RGIE G +F  GTKYS  M ATF   +GK+  + MG YGIG  R +AA IE +
Sbjct: 399 GAPLKMTRGIEAGQVFTLGTKYSKAMGATFLDENGKEQPLVMGCYGIGVGRTMAAAIEQN 458

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           +D +GI+WP ++APF++ ++ + A  +      E IY    K G DV  DD  E+ G +F
Sbjct: 459 NDDQGIVWPRAIAPFEVVVVAVNAKKEEQLTYAEGIYDECRKAGLDVLLDDRKERAGVKF 518

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              DL+G+P++V +G K V +  +E+K R TG   + +  + +        +
Sbjct: 519 KDCDLIGYPVRVTIGPKAVDEDIIEVKVRKTGEVYNFTRADYLEKVQELLKD 570


>gi|218288925|ref|ZP_03493176.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241014|gb|EED08191.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 648

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 163/436 (37%), Gaps = 37/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           ++A    H+ + +   I     +  +G+  WLP G K    +   I + +   G   +  
Sbjct: 238 QEARERDHRRLGKELEIFTLSPEVGQGLPLWLPNGAKIRRIIERYIVDLEESLGYQHVYT 297

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L + +L+  SG ++ Y  +M      +++ ++  P +      +++  + SYR LP  
Sbjct: 298 PHLANVELYKISGHWEHYKDDMYPPMKIDNEELVLRPMNCPHHMMVYKHRLHSYRELPIR 357

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++    R E+     G+ R R   + DA+ F   P+  +  +  +     R++   G+
Sbjct: 358 IAELGTMHRYEMSGALAGLQRVRAMTLNDAHIF-CRPDQIEQEFTGVVRLIQRVYKDFGI 416

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T+ +   D M     S        + L  +  
Sbjct: 417 DDYYHRLSYR--------------DPKNTEKYVQNDEMWELAQSTLRKVMLDLGLEFV-- 460

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +     A      + ++  +L +++ +S   ++    F+   +++L     + G DG+ H
Sbjct: 461 EAEGEAAFYGPKLDVQVRTALGKDETLSTIQLD----FHLPNRFNL----EYVGEDGERH 512

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G M    A +   + G    W   +AP ++ + ++           E++ 
Sbjct: 513 RPVVIHRGVVGTMERFVAFLIEQYKGAFPTW---LAPTQVVVASVA---DEFAGYAEEVA 566

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A+L ++G     D    +IG +   A     P  ++VG++   +  V ++    G    M
Sbjct: 567 AKLRELGIRAEADVSDNKIGYKIRQAQTHKIPYTLVVGAREREEGTVSVRKYHAGDLGVM 626

Query: 430 SLEEVINYASHRFSNN 445
            L++ +          
Sbjct: 627 PLDQFVRQIQDEIERK 642


>gi|207721477|ref|YP_002251917.1| prolyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206586637|emb|CAQ17223.1| prolyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 574

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 121 EIRSYKQMPVNFYQIQNKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +  S
Sbjct: 181 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYS 224



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 7/200 (3%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEV 284
             DF   +   DF        +      P A  +D+ N    D  P+ K      RGIEV
Sbjct: 358 MSDFVCGANEEDFH----YTGVNWGRDLPEAEVADLRNVVEGDPSPDGKGSLAICRGIEV 413

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GT+YS  MSATF   +GK   + MG YGIG  R++ A IE ++D +GIIWP S+
Sbjct: 414 GHVFMLGTRYSESMSATFLDENGKTQPMVMGCYGIGITRILGAAIEQNYDARGIIWPVSI 473

Query: 345 APFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF++ +  +     +  R   ++++A L   G DV  DD GE+ G  FA  +L+G P +
Sbjct: 474 APFEVVICPVGYDRSEAVRAEADRLHAELVAAGIDVILDDRGERPGVMFADWELIGVPFR 533

Query: 404 VIVGSKFVSDSKVEIKHRLT 423
           V+VG + + + K+E++ R  
Sbjct: 534 VVVGERGLKEGKLELQGRRD 553


>gi|329954516|ref|ZP_08295607.1| threonine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328527484|gb|EGF54481.1| threonine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 646

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 158/458 (34%), Gaps = 60/458 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q 
Sbjct: 228 LDEYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGAALRIRLQEFLRRIQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++
Sbjct: 287 RYDYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++  
Sbjct: 347 SPRSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +F  +  ++   +            IG D + E        E  +  + +      
Sbjct: 406 IISIVFQSMHFENFEAQISLRDKVNREKYIGSDENWE------KAEQAIIEACEEKGLKA 459

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                           E    +    K        +G  +  GT
Sbjct: 460 K------------------------------VEYGEAAFYGPKLDFMVKDAIGRRWQLGT 489

Query: 293 ---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               Y+LP      + GAD + H  V +     G+M    AV+     GK  +W   + P
Sbjct: 490 IQVDYNLPERFQLEYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTP 546

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++++ I    +   D  +++   L +       D+  E+IG +    ++   P  +IV
Sbjct: 547 DQVAILPI---SEKFNDYAQEVKDYLKRYDVRAIVDERNEKIGRKIRDNEMKRIPYMLIV 603

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G K   + +V ++ +  G +  M  E+     +    N
Sbjct: 604 GEKEAENREVSVRKQGEGDQGTMKFEDFAKKVNEEVQN 641


>gi|255994452|ref|ZP_05427587.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993165|gb|EEU03254.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 581

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 159/449 (35%), Gaps = 47/449 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      ++ L   M  +   G   +LP G      +    R+E  
Sbjct: 174 LQEYIDRIEEAKKRDHRKIGKEMDLFALM--EEGPGFPFFLPNGMILRTELENYWRQEHR 231

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S +LW  SG YD Y + M      +D      P +       ++  +
Sbjct: 232 KRGYDEIKTPLILSEELWHTSGHYDHYKENMY-FTSIDDAEYAIKPMNCPGAMLTYKRKL 290

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++    R EL     G+MR R F   DA+ F +TP+  K    ++    
Sbjct: 291 YSYRDFPIRLAELGQVHRHELHGALHGLMRVRTFTQDDAHIF-MTPDIVKDEIKRVVSFI 349

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G K   +   + P     + E    A     +    +   D+ I   +  F  
Sbjct: 350 DDVYNLFGFKY-HIELSTRPEDSMGTDEEWNHA-IDSLEAAIKEMGKDYVINEGDGAF-- 405

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
                         Y    D H E              R  + G I   F    K+    
Sbjct: 406 --------------YGPKLDFHLEDSLG----------RTWQCGTIQLDFQMPQKF---- 437

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G+DG+ H  + +     G++     ++     GK  +W   +AP ++ L+ +   
Sbjct: 438 DLTYVGSDGEKHRPIIIHRVIFGSIERFIGILIEHFAGKFPLW---LAPEQVRLLTVT-- 492

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      EK+   L+K G  V  D   E+IG +             ++G +      + 
Sbjct: 493 -EKFVPYAEKVSKELAKHGIRVKVDARNEKIGYKLRQGRNERVSYLAVIGEREAEADTLS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++    G    +S+++ I+      +  +
Sbjct: 552 VRSSKEGDLGSLSIDKFIDALCDEIATKK 580


>gi|312984108|ref|ZP_07791455.1| threonine--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|310894462|gb|EFQ43537.1| threonine--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 644

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 163/443 (36%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I + +   G
Sbjct: 228 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 288 YQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 348 YRDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQTEFAKILKLIMD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M            D +
Sbjct: 407 VYKDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDL 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 453 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 502

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP +  +I +   +    
Sbjct: 503 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPIQAEIIPVN--NDAHG 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L+K G  V  D+  E++G +   +     P  +++G + + +  V ++   
Sbjct: 558 EYAEKVRQELAKRGFRVEVDNRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYG 617

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T      SL + IN       + 
Sbjct: 618 TDEEISKSLTDFINEIDADVKSY 640


>gi|320333471|ref|YP_004170182.1| threonyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319754760|gb|ADV66517.1| threonyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 649

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 167/451 (37%), Gaps = 44/451 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L   +I     KG+  WLP G    + +   +RE+Q
Sbjct: 234 LDEYLHRLEEAKKRDHRKLGRELELF--VIDPLVGKGLPMWLPNGTILREELTRFLREQQ 291

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P + + +L+  SG Y +Y          +D+  +  P +      I+ S 
Sbjct: 292 FARGYQGVVTPNIGNLELYKTSGHYQNYSDSNFSPITVDDEQYMLKPMNCPHHVRIYASK 351

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  +  +   
Sbjct: 352 PRSYRDLPVRLAEFGTVYRYEQSGELNGLTRVRGFTQDDAHLF-CRPDQLKAEFLNVLDL 410

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +    G+  +  R  +               D   T+   ++D  +          +
Sbjct: 411 TVLVLRTFGMNDVRFRVGTR--------------DPENTKYVGAEDNWNAAERQIIEAVE 456

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
           ++    SI     A Y    D             + V  R  ++G I      Y+LP   
Sbjct: 457 EVGLPYSIEPGDAAFYGPKLDF----------VVRDVLGREWQLGTI---QVDYNLPERF 503

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             ++ G DG DH  + +     G++     ++   + G   +W   +AP ++++I I   
Sbjct: 504 DISYVGEDGADHRPIMIHRAPFGSLERFVGILIEHYGGDFPLW---LAPRQVAIIPIA-- 558

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +    + A L   G     DD   ++ ++   A+L   P+ +IVG K     +V 
Sbjct: 559 -DRHNEYAYALEAELRAAGLRTEVDDSSNRMNAKVRAAELSKIPVMLIVGDKEQEGRQVS 617

Query: 418 IKHR---LTGIREDMSLEEVINYASHRFSNN 445
           ++ R       R+ ++ +++      R+   
Sbjct: 618 VRERTPEGHKERKGVAFDDLKAELLERYRTR 648


>gi|256844949|ref|ZP_05550407.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256718508|gb|EEU32063.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 637

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 163/445 (36%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIIRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E   +A+                 P +   + 
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAEAALAGALDKLGRKYKINPGDGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      ++LP   
Sbjct: 462 PKLDFK---------------------------IKDAIGRMWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ +   
Sbjct: 492 DVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFSMW---LAPVQVKVLTLN-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKV 416
              C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V
Sbjct: 547 -DECIPYAKEIMDKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKEV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +    L E   Y    
Sbjct: 606 NIRRFGSKDQFSKPLNEFYTYVVDE 630


>gi|24583839|ref|NP_723725.1| Threonyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|22946307|gb|AAF53166.2| Threonyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|211938559|gb|ACJ13176.1| FI05224p [Drosophila melanogaster]
          Length = 747

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   I+ E  + 
Sbjct: 334 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKR 393

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M       +K     P +      IF +  +S
Sbjct: 394 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 452

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 453 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKY 511

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 512 VYTIFGFSFQLV-LSTRPDNYLGELEQWNDAEKALAESLNEFGMPWKENPGDG------- 563

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 564 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 602

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 603 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 656

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 657 QYAQSVRDQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 716

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 717 DNKVHGEVSVAELITKLQK 735


>gi|288553027|ref|YP_003424962.1| prolyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288544187|gb|ADC48070.1| prolyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 572

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+    LP L++ P DA+I SH+LMLR GMI Q + G+YS+LPL ++ L  V +I+REE
Sbjct: 1   MRQRSLLLPTLRDVPADADIISHQLMLRAGMIRQIAAGVYSYLPLAKRVLHKVESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++PT+  A+LW E+GR+D  G E++RL DR+D+    GPTHEEV+T I R 
Sbjct: 61  MDAAGAQELTMPTMHPAELWQETGRWDKMGGELMRLKDRHDRDFALGPTHEEVITSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  TPE    +Y +M+ +
Sbjct: 121 SISSYKKLPVNLYQIQTKFRDERRPRFGLLRGREFMMKDAYSFHATPESLDEAYKEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  +HEF+ LAD GE  +  S +     
Sbjct: 181 YSRIFSRAGLTFRPVIADSGAIGGKDTHEFMALADVGEDTIAYSDESDYAA 231



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 3/221 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
              +   +   + +     ++      +           +D+   K  D  P  K     
Sbjct: 342 KIIADHAVSAMVNAVCGANEENYHFTGVTADRDFKVDQYADLRFIKEGDPSPCGKGTIRF 401

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVG +F  GT YS  M+AT    +GK   + MG YG+G  R VAA+IE  HD  GI
Sbjct: 402 AQGIEVGQVFKLGTVYSEAMNATILDENGKTQPMIMGCYGVGVSRTVAAIIEQHHDENGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAP+ + L+ + + +    +  E++Y  L K G DV +DD  E+ G +F  +DL+
Sbjct: 462 VWPPSVAPYDVHLLTLNSKNAEQSELSEELYQSLKKTGFDVLYDDRPERAGVKFKDSDLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G PL+V VG +  ++  VE+K R +G   ++++ ++     
Sbjct: 522 GIPLRVSVGKR-AAEGIVEVKIRKSGEVIEVAVADLAEVLK 561


>gi|254304252|ref|ZP_04971610.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324444|gb|EDK89694.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 637

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 165/445 (37%), Gaps = 45/445 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMVIRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +   +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAKYLQLETPIMLNKELWEVSGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E   +A+                 P +   + 
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAEAALAGALDKLGRKYKINPGDGAFYG 461

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               K    R  + G I      ++LP   
Sbjct: 462 PKLDFK---------------------------IKDAIGRMWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP ++ ++ +   
Sbjct: 492 DVTYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQVKVLTLN-- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKV 416
              C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V
Sbjct: 547 -DECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEVENKEV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +   SL+E  NY    
Sbjct: 606 NIRRFGSKDQFSKSLDEFYNYVVDE 630


>gi|15639823|ref|NP_219273.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026061|ref|YP_001933833.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094415|sp|O83809|SYT_TREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689347|sp|B2S475|SYT_TREPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3323150|gb|AAC65804.1| threonyl-tRNA synthetase (thrS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018636|gb|ACD71254.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 592

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 152/453 (33%), Gaps = 50/453 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREE 60
           S+  L        +A+   H+ +    G+ H  + + G   W P G      +   +R  
Sbjct: 175 SEEDLHTYLRMQDEAKRRDHRKLGPALGLFHLDEENPGQVFWHPEGWTLYVAIQQYLRRV 234

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M  L +   ++    P +     +IF+ 
Sbjct: 235 MHEDGYAEVHTPFVMPQSLWERSGHWDKYRANMY-LTEGEKRSFALKPMNCPGHVEIFKQ 293

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP    +     R+E      GVMR R F+  DA+ F  T         +   
Sbjct: 294 KTRSYRDLPLRLSEFGSCTRNEPSGSLHGVMRVRGFVQDDAHIF-CTEAQIASEVTRFCR 352

Query: 180 SYLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              R++   G   + I ++  + P            A+    +   +        P E  
Sbjct: 353 LLARVYADFGFAQEQIRVKFSTRPEQRIGDDATWDRAERALAEACEAAGLSYEHAPGEGA 412

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +    I                               R  + G I      Y LP
Sbjct: 413 FYGPKLEFALID---------------------------TLEREWQCGTI---QVDYQLP 442

Query: 298 ----MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
               ++A + G D + H  V +    IG++     ++   + G     P  +AP +  +I
Sbjct: 443 SCERLNAEYVGEDNQRHMPVILHRTVIGSLERFIGILIEHYGGAF---PPWLAPVQAVVI 499

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +        +  + +   L      V  D   E++ ++   A     P  +IVG + + 
Sbjct: 500 PVAP---AFLEYAQHVARELCARSLRVQADVSAERMNAKIRTAQTQKVPYLLIVGERELR 556

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +V ++ R TG +  M L     +   +    
Sbjct: 557 AQQVAVRPR-TGPQHSMGLSAFSTFLLAKLETR 588


>gi|118580723|ref|YP_901973.1| threonyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166225474|sp|A1ARE5|SYT_PELPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118503433|gb|ABK99915.1| Ser-tRNA(Thr) hydrolase [Pelobacter propionicus DSM 2379]
          Length = 636

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 162/453 (35%), Gaps = 51/453 (11%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +L  L+E+ R D      +L L +    +   G+  W P G      +    R E
Sbjct: 227 KELEAYLHRLEESKRRDHRRLGRELDLFS-FSDEVGAGLVIWHPKGAMLRTILEDFERRE 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +   +LW  SG Y++Y + M    + ++++    P +      I++S
Sbjct: 286 HLKRGYDIVLGPQILKKELWQRSGHYENYRENMY-FTEVDEQSYGIKPMNCLAHMMIYKS 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H++SYR+LP  ++++    R E      G++R R F   DA+     PE        +  
Sbjct: 345 HLRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILCA-PEQLDGEIKGVLK 403

Query: 180 SYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               +    G +   M   + P   IG D + E    A                      
Sbjct: 404 FVSDVMAIFGFEY-EMELSTRPEKSIGDDAAWELATEA--------------------LL 442

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           +   D      I E   A Y    D+  +   D          R  +   I      ++L
Sbjct: 443 SALKDTGRSFEINEGDGAFYGPKIDIKLKDALD----------RRWQCATI---QCDFTL 489

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +  ADG K   V +    +GA+     V+   + G   +W   ++P +  L+ 
Sbjct: 490 PERFDLQYVAADGEKKRPVMVHRVVLGAIERFIGVLIEHYAGNFPLW---LSPVQAMLVT 546

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  +        + +   L + G  V  D   E++  +   A L   P  +++G K +  
Sbjct: 547 VTDN---HIPYAQGVLEHLREAGIRVQGDFRNEKLSFKIREAQLQKVPYMLVIGDKEMES 603

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + V  + R       M  E+ + +      N R
Sbjct: 604 ATVTPRFRDGKNLVAMKPEDFVAFVVEETKNFR 636


>gi|291395207|ref|XP_002714160.1| PREDICTED: threonyl-tRNA synthetase-like [Oryctolagus cuniculus]
          Length = 723

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 154/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRVADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G     +   + P       E    A+                 P +      
Sbjct: 484 RTVYNVFGFSF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWELNPGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIIHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ 
Sbjct: 631 DEYAQKVRQQFHDAKFMADIDLDAGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 691 RDNKVHGERTISETIERLQQLKQSR 715


>gi|291060195|gb|ADD72930.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 582

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 152/453 (33%), Gaps = 50/453 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRT-GMIH--QHSKGIYSWLPLGQKALDNVNAIIREE 60
           S+  L        +A+   H+ +    G+ H  + + G   W P G      +   +R  
Sbjct: 165 SEEDLHTYLRMQDEAKRRDHRKLGPALGLFHLDEENPGQVFWHPEGWTLYVAIQQYLRRV 224

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M  L +   ++    P +     +IF+ 
Sbjct: 225 MHEDGYAEVHTPFVMPQSLWERSGHWDKYRANMY-LTEGEKRSFALKPMNCPGHVEIFKQ 283

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP    +     R+E      GVMR R F+  DA+ F  T         +   
Sbjct: 284 KTRSYRDLPLRLSEFGSCTRNEPSGSLHGVMRVRGFVQDDAHIF-CTEAQIASEVTRFCR 342

Query: 180 SYLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              R++   G   + I ++  + P            A+    +   +        P E  
Sbjct: 343 LLARVYADFGFAQEQIRVKFSTRPEQRIGDDATWDRAERALAEACEAAGLSYEHAPGEGA 402

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +    I                               R  + G I      Y LP
Sbjct: 403 FYGPKLEFALID---------------------------TLEREWQCGTI---QVDYQLP 432

Query: 298 ----MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
               ++A + G D + H  V +    IG++     ++   + G     P  +AP +  +I
Sbjct: 433 SCERLNAEYVGEDNQRHMPVILHRTVIGSLERFIGILIEHYGGAF---PPWLAPVQAVVI 489

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +        +  + +   L      V  D   E++ ++   A     P  +IVG + + 
Sbjct: 490 PVAP---AFLEYAQHVARELCARSLRVQADVSAERMNAKIRTAQTQKVPYLLIVGERELR 546

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +V ++ R TG +  M L     +   +    
Sbjct: 547 AQQVAVRPR-TGPQHSMGLSAFSTFLLAKLETR 578


>gi|2191162|gb|AAB61048.1| Similar to threonyl-tRNA synthetase; coded for by A. thaliana cDNA
           R65376 [Arabidopsis thaliana]
          Length = 702

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 162/460 (35%), Gaps = 56/460 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    A+   H+L+         HQ S G Y +LPLG +  + +   I+
Sbjct: 280 KQLKKYLQFLEE----AKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIK 335

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +    G  E+  P + + +LW  SG  D+Y   M    +   +     P +      IF
Sbjct: 336 NQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIF 394

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  ++SYR LP       +  R+E      G+ R R F   DA+ F  T E  K     +
Sbjct: 395 QHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTT-EQVKGEVQGV 453

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     ++  + P       E    A+    +   +          +  
Sbjct: 454 LEFIDYVYKVFGFTY-ELKLSTRPEKYLGDLETWDKAEADLKEAIEAFGKPLVLNEGDG- 511

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D++    + +   ++    F    +++L 
Sbjct: 512 -------------------AFYGPKIDITVSDAMNRKFQCATLQLD----FQLPIRFNLE 548

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A  +    K   V +    +G++  + A++   + GK   WP  ++P +  +  I   
Sbjct: 549 YAA--EDEAKKSRPVMIHRAVLGSVERMFAILLEHYKGK---WPFWISPRQAIVCPISEK 603

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQV 404
            Q      EK+  ++   G  V  D    +I  +                A L  +   +
Sbjct: 604 SQ---QYAEKVQKQIKDAGFYVDADLTDRKIDKKVNDFGSCSKFCSVVREAQLAQYNYIL 660

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +VG    +  +V ++ R        S+E+++     + + 
Sbjct: 661 VVGETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAKTAE 700


>gi|21428938|gb|AAM50188.1| GH20022p [Drosophila melanogaster]
          Length = 747

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   I+ E  + 
Sbjct: 334 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKR 393

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M       +K     P +      IF +  +S
Sbjct: 394 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 452

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 453 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKY 511

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 512 VYTIFGFSFQLV-LSTRPDNYLGELEQWNDAEKALAESLNEFGMPWKENPGDG------- 563

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 564 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 602

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 603 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 656

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 657 QYAQSVRDQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 716

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 717 DNKVHGEVSVAELITKLQK 735


>gi|325283002|ref|YP_004255543.1| threonyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314811|gb|ADY25926.1| threonyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 650

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 170/448 (37%), Gaps = 42/448 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLR--TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E  R D      +L L   + +I     G+  WLP G      +   I + + +
Sbjct: 237 YLHLLEEAKRRDHRRLGKELDLFFTSDVI---GPGLPIWLPSGATIRRELERFIVDVELK 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  ++L+  SG +D Y ++M  +   + + ++  P +      I+     
Sbjct: 294 NGYQHVYSPALAKSELYKISGHWDHYQEDMFPIMHLDQEELVLRPMNCPHHIQIYAHKPH 353

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++   +R E   +  G+ R R   + DA+ F   P+  +  +  +     
Sbjct: 354 SYRELPLKIAELGTMYRYEQSGQLTGLSRVRSMTLNDAHIF-CRPDQIQEEFKAVVRMIQ 412

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG K    R                  D  +T+ +   D M     ++  +    
Sbjct: 413 EVYEVLGFKDYSYRLSLR--------------DPQDTEKYYQDDQMWDTAEAQLREALSD 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           + ++    +     A      + ++  +L +++ +S   ++    F    K+       +
Sbjct: 459 LGVD--YYESPGDAAFYGPKLDVQVRSALGKDETISTAQLD----FLLPQKF----DLEY 508

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG      M   G+ + M  + A +  +  G    W   +AP ++ +I I       
Sbjct: 509 VAEDGSRQRPVMIHRGVISTMERMTAFLIENTAGNFPFW---LAPRQVMIIPIA---DRH 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++ A L   G     D   +++ ++   A+L   P+ +IVG K      V ++ R
Sbjct: 563 NAYAEELRAELVAAGLRAEVDTSSDRMNAKVRDAELKKIPVMLIVGDKEQEARAVSVRER 622

Query: 422 ---LTGIREDMSLEEVINYASHRFSNNR 446
                  R+ ++  ++ +    R+ + +
Sbjct: 623 TPEGHQERKGVAFSDLKSELVTRYQSRQ 650


>gi|269836488|ref|YP_003318716.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269785751|gb|ACZ37894.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 596

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 150/442 (33%), Gaps = 46/442 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREE 60
           + +L  L+E    A+   H+ + R   +         G+  W P G      +     EE
Sbjct: 181 QDYLHRLEE----AQRRDHRRLGRELDLFSVNEDIGAGLILWHPKGAMIRHLIERFETEE 236

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G   +  P + S D++ +SG  ++Y + M    D         P +      I+ S
Sbjct: 237 HLARGYQLVYTPHIASGDIYRKSGHLETYQENMYSPMDIEGAPYYLKPMNCPGHIMIYNS 296

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP    ++   +R E      G++R R F   DA+ F   P+  +     +  
Sbjct: 297 QVRSYRDLPIRLAELGTVYRYERSGTLHGMLRVRGFTQDDAHIF-CRPDQLEDEIKGVLD 355

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L      G +     A + P     S E    A         +        P      
Sbjct: 356 LALYFARVFGYEYEAFLA-TRPEKSIGSDENWERATETLANALRNMGIPYEIDPGAG--- 411

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K  DSL          ++    F    ++     
Sbjct: 412 -----------------AFYGPKIDIKFLDSLGREWTGPTIQVD----FNLPERF----D 446

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G DG+ H V M     +G+M      +   + G   +W   +AP +  +I I    
Sbjct: 447 ATYVGEDGERHRVVMVHRTVLGSMERFVGGLIEHYAGAFPVW---LAPVQAEVIPIA--- 500

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++ ARL +    V  +D  +++ ++   A L   P  ++VG K      V +
Sbjct: 501 DRHVPYAHEVAARLKEADLRVEVNDSNDRMQAKIRRAQLQRIPYMLVVGDKEAEAGTVAV 560

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R       M ++E I  A  
Sbjct: 561 RLRTNENLGAMPVDEFIALAKE 582


>gi|323144099|ref|ZP_08078739.1| proline--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416114|gb|EFY06808.1| proline--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 593

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 139/306 (45%), Positives = 171/306 (55%), Gaps = 1/306 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+ENP +A + SH+LMLR G+I Q + GIY WLP G + L  V  IIREE
Sbjct: 22  MRTSKYLLSTLKENPVEAAVVSHRLMLRAGLIRQIASGIYVWLPTGMRVLQKVEKIIREE 81

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGRY+ YG E+ RL DR     + GPTHEEV+T I R 
Sbjct: 82  LNRAGAIELFMPFVQPADLWKESGRYEKYGPELCRLKDRKKNEFVLGPTHEEVITAIARR 141

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS R LP   YQIQ KFRDE+RPRFGVMR REF+MKDAYSF +     + +Y  M+ +
Sbjct: 142 EIKSARQLPINLYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFHIDHASLEKTYKDMYDA 201

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLAD GE  +  S                
Sbjct: 202 YSRIFTRLGLDFRPVEADNGSIGGSSSHEFQVLADAGEDTIVFSDKSDYAANIEMAEALA 261

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +  E ++          +E       + K+V    I  G     GT Y L M  
Sbjct: 262 PAYDRKAPAEAYSEKETKGCHTVDEAAAALGLDAKQVLKSLIVRGEKKEDGT-YDLIMLC 320

Query: 301 TFKGAD 306
                +
Sbjct: 321 LCGNQE 326



 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +    +F   + +T +  I                 +    E   D          +GIE
Sbjct: 376 ADKMANFACGANHTGYHFINVNWDRDVPNYEVADLRNVEEGEPSPDGQGT--LHLRKGIE 433

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           VG +F  GTKYS  M AT  G DGK   +QMG YGIG  RV+AA IE  HD KGIIWPDS
Sbjct: 434 VGQVFMLGTKYSESMGATVLGEDGKPINMQMGCYGIGVTRVIAAAIEQHHDDKGIIWPDS 493

Query: 344 VAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           +APF+++++ IK    Q  R+A EK+YA L   G +V +DD  E+ G  FA  +L+G P 
Sbjct: 494 MAPFQVAIVAIKPNKSQAVREAAEKLYAELEAKGVEVLYDDRDERPGVMFADMELIGIPH 553

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + +G + ++   VE K R TG +E++S+++++++   + 
Sbjct: 554 VITIGDRGLAAGSVEYKSRKTGQKEEVSVDKILDFVCAKL 593


>gi|157376262|ref|YP_001474862.1| prolyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|157318636|gb|ABV37734.1| prolyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
          Length = 584

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 161/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 16  MRVSKYLLSTQKETPADAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKVEAIVREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 76  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 136 EVNSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDETYETMFQA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +  S
Sbjct: 196 YNNILTRLGLAFRPVMADTGSIGGSMSHEFHVLANSGEDLIAYS 239



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 111/204 (54%), Gaps = 3/204 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
            D      I  +   P A   D+ N    ++ P  +   A  RGIEVGHIF  G  YS  
Sbjct: 379 QDDKHYFGINWERDLPEAEAFDLRNIIEGEASPCGQGTIALLRGIEVGHIFQLGKNYSEA 438

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+A     +GK   + MG YG+G  R+VAA IE +HD +GI WPD++APF++ ++ +  H
Sbjct: 439 MNANVLDHNGKAQTLLMGCYGVGVSRMVAAAIEQNHDDRGITWPDAIAPFRVGILPMNMH 498

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  EK+Y  +   G +V +DD  E+ G  FA  +L+G P  V++G + + +   
Sbjct: 499 KSHRVKDMAEKLYQDMQDAGFEVLFDDRKERAGVMFADMELVGLPHVVVIGDRNIDNGVF 558

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
           E K+R TG ++++  +++I++   
Sbjct: 559 EYKNRRTGEKQEIPFDQIIDFLKS 582


>gi|311103966|ref|YP_003976819.1| prolyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310758655|gb|ADP14104.1| prolyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 575

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 129/283 (45%), Positives = 173/283 (61%), Gaps = 4/283 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIHSYRQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQASYDTMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  +  + D         N +  
Sbjct: 181 YMRIFGRLGLGFRAVAADTGSIGGTRSHEFQVIADTGEDLLVYNADTDYAA----NIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + ++L     +     A        K  D          R I+
Sbjct: 237 EAVALYPTRAEPAQAMADVPTPGAAKCEDVAKLLGLPLERTIK 279



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D         +        +D+ N    D  P+ K      RGIEVGH+FY G 
Sbjct: 362 CGANKEDFHIQGVNWGRDLPEPELVADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGK 421

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + ATF    GK   ++MG YGIG  R+V A IE +HD +GIIWP ++APF++ + 
Sbjct: 422 KYSEALKATFLDETGKPAVLEMGCYGIGVTRIVGAAIEQNHDARGIIWPRAIAPFEVVIC 481

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  RD  +K+Y  L   G DV  DD   + G  FA  +L+G PL+V VG + +
Sbjct: 482 PVGWGKSETVRDTAQKLYESLLARGVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGL 541

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +D  VE++ R       + +E  +     + 
Sbjct: 542 NDGVVELQARRETEAAKIPVESALEAVLTKL 572


>gi|295706249|ref|YP_003599324.1| prolyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294803908|gb|ADF40974.1| prolyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 565

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 114/225 (50%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+I SH+L+LR G + Q+S G+YS+LPLG++ L  V  I+REE
Sbjct: 1   MRQSSTLIPTLREVPADADIKSHQLLLRAGYMRQNSSGVYSFLPLGKRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P LQ A+LW ESGR+ SYG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MDRAGSVELLMPALQQAELWQESGRWYSYGPELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+KMF +
Sbjct: 121 EVKSYKRLPLNLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASQESLDEVYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL    + A+SG +GG  +HEF+VL++ GE  +  S 
Sbjct: 181 YSRIFERCGLNFRAVIADSGAMGGKDTHEFMVLSEIGEDTIAYSD 225



 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 120/249 (48%), Gaps = 17/249 (6%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG   S E  V+AD     +       +                +          A
Sbjct: 332 SVGPIGVSDSVE--VVADHAVKAIANGVCGANEE------------GYHYTNVNERNFNA 377

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D    +  D  P+ + V    +GIEVGH+F  GT+YS  M AT+   +G+   + MG
Sbjct: 378 TYEDFRFIQEGDQSPDGQGVIKFAKGIEVGHVFKLGTRYSEAMGATYLDENGRSQPMIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+ E  +D  G++WP++V P+++ +I +   +   R+  EK+Y  L   
Sbjct: 438 CYGIGVSRTVAAIAEQFNDENGLLWPEAVTPYQVHVIPVNVKNDEQRELGEKLYNELLDN 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +V  DD  E+ G +FA +DL+G P++V VG +  S+  VE+K R TG   ++S++ ++
Sbjct: 498 RFEVLLDDRQERAGVKFADSDLIGLPVRVTVGKR-ASEGIVEVKVRKTGESLEVSVDNLV 556

Query: 436 NYASHRFSN 444
           +      + 
Sbjct: 557 STVKELLAK 565


>gi|257467949|ref|ZP_05632045.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062235|ref|ZP_07926720.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313687911|gb|EFS24746.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 569

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AE ASHKL+LR  MI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MRFSKSYIKTLKETPKEAETASHKLLLRASMIKKLTSGVYTYLPLGYKALKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR+D  G  M++L DRN +  + GPTHEEV+TD+ R+
Sbjct: 61  MDRAGSQEILMPVLQPAELWKESGRWDVMGPLMMKLQDRNKRDFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     +  M  +
Sbjct: 121 DISSYKALPLSLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHATAESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLAD+GE ++          
Sbjct: 181 YSRIFSRCGLKFRPVEADSGAIGGSGSQEFHVLADSGEDEIIYCDSCSYAA 231



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 118/251 (47%), Gaps = 10/251 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           ++   GP G +L  +  V+ADT  T++       +        D   I        +   
Sbjct: 329 IKGFIGPYGIELG-DIKVIADTAVTEI------NNHTAGGNKMDTHYINVNYGRDYKADI 381

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                +    E         K  SARGIEVGHIF  G KYS  ++ATF    G+   + M
Sbjct: 382 VADIKTVKVGETCE--RCGGKLHSARGIEVGHIFKLGDKYSKALNATFLDDKGESKVMLM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +A+ IE ++D  GIIWP ++AP+ + +I     ++      E+IY  L  
Sbjct: 440 GCYGIGVSRTLASAIEQNNDEFGIIWPTALAPYIVDVIPANVKNEEQVKVAEEIYEALLN 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G D   DD  E+ G +F  ADL+GFP +V+ G +   +  VE+K R TG   ++S ++V
Sbjct: 500 DGIDSMIDDRDERPGFKFKDADLIGFPFKVVSGKR-AGEGIVELKIRRTGETLEISKDDV 558

Query: 435 INYASHRFSNN 445
           ++         
Sbjct: 559 VSTVRELMKKY 569


>gi|319410604|emb|CBY90973.1| prolyl-tRNA synthetase [Neisseria meningitidis WUE 2594]
          Length = 599

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 365 LGPVGFAGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 424

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 425 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 484

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++A F++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 485 QNNDEKGIIWTKAMASFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 545 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAIAIGEIVARVTASLN 598


>gi|294500903|ref|YP_003564603.1| prolyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294350840|gb|ADE71169.1| prolyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 565

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 113/225 (50%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+I SH+L+LR G + Q++ G+YS+LPLG++ L  V  I+REE
Sbjct: 1   MRQSSTLIPTLREVPADADIKSHQLLLRAGYMRQNASGVYSFLPLGKRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P LQ A+LW ESGR+ SYG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MDRAGSVELLMPALQQAELWQESGRWYSYGPELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+KMF +
Sbjct: 121 EVKSYKRLPLNLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASQESLDEVYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL    + A+SG +GG  +HEF+VL++ GE  +  S 
Sbjct: 181 YSRIFERCGLNFRAVIADSGAMGGKDTHEFMVLSEIGEDTIAYSD 225



 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 17/249 (6%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG   S E  V+AD     +       +                +          A
Sbjct: 332 SVGPIGVSDSVE--VVADHAVKAIANGVCGANEE------------GYHYTNVNERNFNA 377

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D    +  D  P+ + V    +GIEVGH+F  GT+YS  M AT+   +G++  + MG
Sbjct: 378 TYEDFRFIQEGDQSPDGQGVIKFAKGIEVGHVFKLGTRYSEAMGATYLDENGRNQPMIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+ E  +D  G++WP++V P+++ +I +   +   R+  EK+Y  L   
Sbjct: 438 CYGIGVSRTVAAIAEQFNDENGLLWPEAVTPYQVHVIPVNVKNDEQRELGEKLYNELLDN 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +V  DD  E+ G +FA +DL+G P++V VG +  S+  VE+K R TG   ++S++ ++
Sbjct: 498 RFEVLLDDRQERAGVKFADSDLIGLPVRVTVGKR-ASEGIVEVKVRKTGESLEVSVDNLV 556

Query: 436 NYASHRFSN 444
           +      + 
Sbjct: 557 STVKELLAK 565


>gi|110679173|ref|YP_682180.1| threonyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|123362019|sp|Q168U9|SYT_ROSDO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109455289|gb|ABG31494.1| threonyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 648

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 147/445 (33%), Gaps = 51/445 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 KAHLTMLEE----AAKRDHRKLGREMDLFHMQEEAPGQVFWHPNGWSIYTTLQDYMRRKQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTD 116
              G  E++ P +    LW  SG +D Y + M  +    D A         P +      
Sbjct: 290 RAAGYQEVNTPQVVDRKLWEASGHWDKYQEHMFIVEVDEDHAREKAVNALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   D ++F    E    +  
Sbjct: 350 IFNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHTFCR--EDQIEAEC 407

Query: 176 KMFVSYL-RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             F++YL  ++  LG +   +   + P     S E     +        +          
Sbjct: 408 AAFITYLSSVYQDLGFEKFEIMFATRPEKRVGSEESWDHVEAALENAIKATGHPYTLDEG 467

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           E   +   +                                    R  + G  F      
Sbjct: 468 EGAFYGPKLDFKLTD---------------------------AIGREWQCGT-FQVDPNL 499

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
              + AT+ G DG K     +    +G+      ++  +  GK   W   +AP ++ + +
Sbjct: 500 PERLDATYIGQDGAKHRPYMLHRACLGSFERFIGILIENSAGKLPFW---LAPRQVVVAS 556

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      D   ++  +L   G     D   E+I  +     +   P+ + VG++ V +
Sbjct: 557 IISD---ADDYVLEVVEKLQAAGVRAEADVRNEKINYKVREHSVGKVPVILAVGAREVEE 613

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
             V ++          +L+ V    
Sbjct: 614 KTVTLRRLGEKKTSVETLDAVTQAL 638


>gi|114319700|ref|YP_741383.1| prolyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312397|sp|Q0AB94|SYP_ALHEH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114226094|gb|ABI55893.1| prolyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 568

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S + L   +E P DAEI SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRASLFPLSTSKETPADAEIVSHQLMLRAGMIRKLAAGLYTWTPLGLRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW ES R+D YG E+LRL DR+++   +GPTHEEV+TD  R 
Sbjct: 61  MDRAGAHELLMPAVQPAELWQESTRWDKYGPELLRLKDRHERDFCFGPTHEEVITDYVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVKSYRQLPLNLYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDDCLARTYQVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A+SG IGG +SHEF VLA++GE  V  S +     
Sbjct: 181 YTRIFERTGLVFRAVAADSGNIGGSVSHEFHVLAESGEDAVAFSDESDYAA 231



 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 104/206 (50%), Gaps = 3/206 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D      I           +D+      D  P+ +     ARGIEVGHIF  G +YS  
Sbjct: 362 QDDAHYFGINWGRDVALPEVADLREVVAGDPSPDGRGTLEIARGIEVGHIFQLGREYSEK 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M AT     G    V MG YGIG  RVVAA IE +HD  GIIWP  +APF+++L+ I  +
Sbjct: 422 MKATVLNEAGDAQTVTMGCYGIGVSRVVAAAIEQNHDDNGIIWPAPIAPFQLALVPIGMN 481

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   +  EK+YA L   G +VF+DD   + G +FA  +L+G P ++++G + + +  V
Sbjct: 482 RSEAVTEQAEKLYAELQAEGVEVFFDDRDARPGVKFADMELIGIPHRLVIGDRGLKNGVV 541

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
           E + R      D+ L E+  +   R 
Sbjct: 542 EYRGRRDSESTDVPLAELSAFLRERL 567


>gi|15603235|ref|NP_246309.1| prolyl-tRNA synthetase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|81856712|sp|Q9CL72|SYP_PASMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12721741|gb|AAK03454.1| ProS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 571

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 156/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEASIVSHQLMLRAGMIRPLASGLYTWLPTGLRVLNKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +   Q A+LW ESGR++ YG E+LR  DR ++  + GPT+EEV+TD+ R 
Sbjct: 61  MDKSGALEVKMAVTQPAELWQESGRWEEYGPELLRFKDRGERDFVIGPTNEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYHIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTHECLQKTYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V  S
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFS 224



 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 121/208 (58%), Gaps = 3/208 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  
Sbjct: 364 QDGKHYFGINWERDLPVPHIADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSAA 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT +G DG+   + MG YGIG  RV+AA IE  HD +GIIWPD++APFK++++ +  H
Sbjct: 424 MNATVQGEDGRPQTMIMGCYGIGVTRVIAAAIEQHHDERGIIWPDNIAPFKVAIVPMNMH 483

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L+  G +V +DD  E+ G  FA  +L+G P  +++G K +   ++
Sbjct: 484 KSESVQQFAEELYRTLTAQGVEVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R +G +E ++ +++++    +F++
Sbjct: 544 EYKYRRSGEKEMIAKDQLLDVLKAKFAS 571


>gi|170695316|ref|ZP_02886462.1| prolyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139716|gb|EDT07898.1| prolyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 578

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +   
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYC 224



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + S   DF        +      P    +D+ + K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGSNEVDFH----TTGVNWGRDLPEPVVADIRDVKKGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M+AT    +GK   ++MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMNATCLDENGKPQPMEMGCYGVGITRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     +  R+  +K+YA L + G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSEAVREQADKLYAELVEAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       + ++E       +  
Sbjct: 532 HRLVIGDRGLKEGKLEYQGRRDAEATLLPVDEAAQTVIAKVR 573


>gi|148671336|gb|EDL03283.1| threonyl-tRNA synthetase, isoform CRA_a [Mus musculus]
          Length = 544

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 128 LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 188 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 246

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 247 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 305

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 306 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 358

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 359 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 398

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 399 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 452

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 453 EYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 512

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  + ++EE +          
Sbjct: 513 DNKVHGERTVEETVRRLQQLKQTR 536


>gi|25013040|gb|AAN71609.1| RH56418p [Drosophila melanogaster]
 gi|220950596|gb|ACL87841.1| Aats-thr-PB [synthetic construct]
          Length = 711

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   I+ E  + 
Sbjct: 298 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKR 357

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M       +K     P +      IF +  +S
Sbjct: 358 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 416

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 417 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKY 475

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 476 VYTIFGFSFQLV-LSTRPDNYLGELEQWNDAEKALAESLNEFGMPWKENPGDG------- 527

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 528 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 566

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 567 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 620

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 621 QYAQSVRDQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 680

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 681 DNKVHGEVSVAELITKLQK 699


>gi|194861340|ref|XP_001969762.1| GG23767 [Drosophila erecta]
 gi|190661629|gb|EDV58821.1| GG23767 [Drosophila erecta]
          Length = 746

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 156/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   I+ E  + 
Sbjct: 333 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFIKSEYRKR 392

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M        +     P +      IF +  +S
Sbjct: 393 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEK-ETFALKPMNCPGHCLIFDNRNRS 451

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 452 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKY 510

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 511 VYTIFGFSFQLV-LSTRPDNYLGELEQWNDAEKALAESLNEFGMPWKENPGDG------- 562

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 563 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 601

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 602 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 655

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 656 QYAQSVRDQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 715

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 716 DNKVHGEVSVAELITKLQK 734


>gi|227510530|ref|ZP_03940579.1| threonine--tRNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190182|gb|EEI70249.1| threonine--tRNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 658

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 163/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           + + RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 249 EAHERDHRVIGNQLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIVDKEVANGYEHVY 306

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+ +SG ++ Y ++M    D  D + +   P +      I+  HI+SYR LP
Sbjct: 307 TPVLANLDLYKQSGHWEHYREDMFPPMDMGDGEELELRPMNCPSHIQIYNHHIRSYRELP 366

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  +  +    + ++H  
Sbjct: 367 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIQEEFQNILKLMVEVYHDF 425

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S      D + L+ +
Sbjct: 426 DINDYTFRLSYR--------------DPENTEKYFDDDEMWNRAQSMLKGAMDELGLDYV 471

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + G DGK
Sbjct: 472 --EAEGEAAFYGPKLDVQTKTALGNEETLSTIQLD----FMLPERF----DLHYVGEDGK 521

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ + M    A +   + G    W   +AP ++ +I +        D  ++
Sbjct: 522 QHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPHQVKIIPVS--QDKHGDYAKQ 576

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  +L ++      D   E++G     A     P  ++VG + V+   V ++       +
Sbjct: 577 INDQLRRLKIRSSVDTRAEKMGYLIRDAQTHKIPYTLVVGDEEVNGKSVSVRRYGEKETQ 636

Query: 428 DMSLEEVINYASHRFSNN 445
             SL+  ++      ++ 
Sbjct: 637 AESLDAFVDEIQKDIASY 654


>gi|300690369|ref|YP_003751364.1| proline--tRNA ligase [Ralstonia solanacearum PSI07]
 gi|299077429|emb|CBJ50055.1| Proline--tRNA ligase [Ralstonia solanacearum PSI07]
          Length = 574

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 162/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYGKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A++G IGG  SHEF V+A+TGE  +  S
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYS 224



 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 7/200 (3%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEV 284
             DF   +   DF        +      P A  +D+ N    D  P+ K      RGIEV
Sbjct: 358 MSDFVCGANEEDFH----YTGVNWGRDLPEAEVADLRNVVEGDPSPDGKGALALCRGIEV 413

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GT+YS  M+ATF   +GK   + MG YGIG  R++ A IE ++D +GIIWP S+
Sbjct: 414 GHVFMLGTRYSESMNATFLDENGKTQPMVMGCYGIGITRILGAAIEQNYDARGIIWPVSI 473

Query: 345 APFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF++ +  +     +  R   ++++A L+  G DV  DD GE+ G  FA  +L+G P +
Sbjct: 474 APFEVVICPVGYDRSEAVRAEADRLHAELAAAGIDVILDDRGERPGVMFADWELIGVPFR 533

Query: 404 VIVGSKFVSDSKVEIKHRLT 423
           V+VG + + + K+E++ R  
Sbjct: 534 VVVGERGLKEGKLELQGRRD 553


>gi|297617181|ref|YP_003702340.1| prolyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145018|gb|ADI01775.1| prolyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 567

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F P L+E+P +AE  SH+L+ R GM+ + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MKASELFFPTLREDPAEAETVSHRLLFRAGMVRKTAAGIYTYLPLGFRVIKKIMNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q  +LW +SGR++ YG EM RL DR+ +    GPTHEEV+TD+   
Sbjct: 61  MDRAGGQEVGLPIIQPRELWAQSGRWEVYGDEMFRLKDRHQRDFCLGPTHEEVITDVVNH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ K+RDE+RPRFG++R REF+MKD YSFD+   G + SY KM+ +
Sbjct: 121 EVHSYRDLPLLLYQIQNKYRDEIRPRFGLLRGREFIMKDLYSFDVDEAGLEVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F RLGL+   + A+SG IGG++SHEFIVLA TGE+ +          
Sbjct: 181 YCRVFERLGLQYRVVEADSGAIGGNVSHEFIVLAPTGESVIVFCDACEYAA 231



 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 222 FCSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--- 274
              K + D  + S N        D     ++         A  D+ N +  D  P     
Sbjct: 337 MNMKVYADLEVQSMNNFVCGANEDDYHYINVNPGRDFQPEAFCDLRNAEEGDICPVCREG 396

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  + RGIE GHIF  GTKYS  M ATF   +GK+  + MG YGIG  R +AA +E +HD
Sbjct: 397 KLKATRGIETGHIFKLGTKYSGKMGATFLDENGKERLMVMGCYGIGISRTMAAAVEQNHD 456

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GIIWP ++AP++I ++ + + D    +   K+Y  L K G +V  DD  ++ G +F  
Sbjct: 457 ENGIIWPLAIAPYQIIIVPVNSKDGQQMEIGMKLYHELVKQGYEVIIDDRDQRAGVKFKD 516

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ADL+G P+++ +G K +   +VEIK R     + + +E V          +
Sbjct: 517 ADLIGVPVRITIGPKLLKAGQVEIKKRWENEVKGVPIEHVSTEVRSILRED 567


>gi|304315915|ref|YP_003851060.1| prolyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777417|gb|ADL67976.1| prolyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 570

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/257 (45%), Positives = 159/257 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  M+ + + G+Y +LPLG++ L  +  I+REE
Sbjct: 1   MRLSQLLIPTLREVPAEAEIPSHTLMLKAAMMRKLASGVYIYLPLGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +  A+L  ESGR+D +G EM +L DRND+    GPTHEEV TD+ R+
Sbjct: 61  MDRAGAQEVLMPAIIPAELLKESGRWDVFGPEMFKLKDRNDREFCLGPTHEEVFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD+  +G   S++KM+ +
Sbjct: 121 EVKSYRQLPLTIYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDVDWDGLDASFDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK   + A+SG +GG  S EF+V +  GE  +             +     
Sbjct: 181 YCRIFDRCGLKYTVVEADSGAMGGKDSKEFMVTSSVGEAVIAYCDSCGYAANEEKAECTV 240

Query: 241 DIISLNSIVEQWTAPYA 257
           +  S   I         
Sbjct: 241 EHKSDEEIKPLEKIYTP 257



 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 72/185 (38%), Positives = 100/185 (54%), Gaps = 3/185 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG
Sbjct: 386 RKVVDGDKCPRCGNPLKLERGIEVGHIFKLGTKYSDALGANYIDENGNEKPMIMGCYGIG 445

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+ AA IE +HD KGIIWP S+AP+   ++ +   +   R+  EKIY  LSK G +  
Sbjct: 446 LNRIAAAAIEQNHDDKGIIWPMSIAPYHAIVVPVNVSNDAQRNLAEKIYDELSKAGIETL 505

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD   + G +F  ADLLG P+++ VG K  SD+ VE+K R      +++ +EV+N    
Sbjct: 506 IDDRDLRAGVKFNDADLLGIPIRITVGKK-ASDNIVELKLRRDENSIELNYDEVVNKVKE 564

Query: 441 RFSNN 445
              N+
Sbjct: 565 LIINS 569


>gi|197103889|ref|YP_002129266.1| threonyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|238690165|sp|B4RE95|SYT_PHEZH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|196477309|gb|ACG76837.1| threonyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 658

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 142/423 (33%), Gaps = 48/423 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++  L+E    AE   H+ + R      + +  KG+  W   G      V + +R   
Sbjct: 230 EAYIQRLEE----AEKRDHRKLGRQMDLFHMQEEGKGMVFWHEKGLTLWRTVESYVRRRL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P +     W +SG +D Y   M        + +   P +      IF+  
Sbjct: 286 DEAGYQEVRTPQVLDRVFWEKSGHWDKYRPNMFVCETEEGEELSLKPMNCPGHVQIFKFG 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            KSYR+LP    +     R E      G+MR R F   DA+ F    +  +    +    
Sbjct: 346 QKSYRDLPLRMAEFGACHRYEPSGALHGLMRVRAFTQDDAHIF-CREDQIEEETARFIEL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I    GL+   +   + P     S EF   A+  +      K  ++  I   +  F 
Sbjct: 405 ANSIHADFGLERDHIALATRPEVRAGSDEFWDKAE-AQMLAAARKAGVEPVIAEGDGAFY 463

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                  +                          K    R    G I      Y LP  +
Sbjct: 464 APKLDWVL--------------------------KDSIGRTWTCGTI---QLDYVLPERL 494

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   DG K   V +     G++     V+  ++ G   +W   +AP ++ +  I + 
Sbjct: 495 GAEYVAEDGSKQRPVMLHRAICGSLERFIGVLIENYAGAFPLW---LAPVQVVVATITSD 551

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                 A     A L   G  V  D   E+I  +     L   P+  +VG +   + KV 
Sbjct: 552 ADDYARAA---AAELKAKGLRVELDLRNEKINYKVREHSLAKVPVIAVVGRREAEEGKVA 608

Query: 418 IKH 420
           ++ 
Sbjct: 609 LRR 611


>gi|118580173|ref|YP_901423.1| prolyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166980138|sp|A1APU5|SYP_PELPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118502883|gb|ABK99365.1| prolyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 576

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+YF+P ++E P DAE+ SH+LMLR GMI + + GIY++LPLG +++    AI+REE
Sbjct: 1   MFYSRYFIPTIKETPSDAEVVSHQLMLRAGMIRKLAAGIYNYLPLGLRSIRKFEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIEM +P++Q A+LW ESGR+  YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIEMLMPSVQPAELWEESGRWSFYGKELLRFRDRKDGEFCMGPTHEEVITDMVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    +  SY  MF +
Sbjct: 121 EIKSYRQMPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDVDSAAADGSYELMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+RIF R GL    + A++G IGG  SHEF+VLAD+GE  +          
Sbjct: 181 YMRIFERCGLNFRAVEADTGTIGGSSSHEFMVLADSGEDAIVSCDSCRYAA 231



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 3/179 (1%)

Query: 263 HNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            N +  D  P     K    RGIEVGH+F  GTKYS  + AT+  ADGK+  + MG YGI
Sbjct: 386 RNVEAGDPCPRCEGGKLEMWRGIEVGHVFKLGTKYSQALGATYLDADGKEQVIFMGCYGI 445

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R VAA IE +HD  GII+P  +APF  S++ +   D+    A E++Y RL + G +V
Sbjct: 446 GIGRTVAAAIEQNHDDNGIIFPLPLAPFHCSVVALNTKDKGVMAAAEEMYFRLEQQGIEV 505

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +DD  E+ G +F   DL+G PL+++VGSK +S+ KVE+K R +G    +S +E +   
Sbjct: 506 LFDDRDERPGVKFKDNDLIGIPLRIVVGSKGLSEGKVEVKIRASGEMLLLSPDEAVETI 564


>gi|295687966|ref|YP_003591659.1| threonyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295429869|gb|ADG09041.1| threonyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 658

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 151/441 (34%), Gaps = 48/441 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  ++E    AE   H+ + +T     I +  KG+  W P G      +   +R   + 
Sbjct: 237 YLKRIEE----AEKRDHRKLGKTMDLFHIQEEGKGMVFWHPKGWALYRVLEDYMRRRLDA 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG  + +G  M        + +   P +      IF    K
Sbjct: 293 AGYKEVKTPQILDKSLWEKSGHAEKFGHAMFMCESAEGEVLAVKPMNCPGHIQIFNVGQK 352

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +     R E      G+MR R F   DA+ F    E       +      
Sbjct: 353 SYRELPLRMAEFGACHRYEPSGAMHGIMRVRAFTQDDAHIF-CREEQVTEESARFIELLR 411

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +++ LG+     +  + P     + E    A++  +    +        P E   +   
Sbjct: 412 SVYNDLGMTLADTKFSTRPDLRAGTDEVWDKAESALSAAAEAAGETLVLQPGEGAFYGPK 471

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +  +                            K    R  + G        + LP  + A
Sbjct: 472 LEFSL---------------------------KDAIGRVWQCGT---LQLDFVLPERLDA 501

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG K   V +    +G+      ++  +  G   +W   +AP ++ +  I +   
Sbjct: 502 EYVSEDGSKKRPVMLHRAILGSFERFIGILLENFAGALPVW---LAPTQVVVATITSD-- 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L+K+G     D   E+I  +     L   P+  +VG K     ++ ++
Sbjct: 557 -ADDYAREVVETLTKLGMRAELDLRNEKINYKIREHSLAKVPVIAVVGRKEAETRQLALR 615

Query: 420 HRLTGIREDMSLEEVINYASH 440
                 +  +SLEE I+  + 
Sbjct: 616 RLGGEGQSILSLEEAISVLTS 636


>gi|150024985|ref|YP_001295811.1| threonine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
 gi|166223340|sp|A6GY22|SYT_FLAPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149771526|emb|CAL42995.1| Threonine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 648

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 162/447 (36%), Gaps = 43/447 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L      +  +G+  WLP G    D +   +++ Q + G
Sbjct: 229 YLELLEEAKRRDHRKLGKELELFA-FSQKVGQGLPLWLPKGAALRDRLEQFLKKAQKKGG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   +L+V SG Y  YG +  +        +  +  P +     +I+     
Sbjct: 288 YEQVVTPHIGQKELYVTSGHYAKYGADSFQPISTPTEGEEFLLKPMNCPHHCEIYNVRPW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+    L
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFKKVIDLVL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG ++   +                       +   S +  +    +      D 
Sbjct: 407 YVFGSLGFENFTAQISLRD-------------KENRDKYIGSDENWEKAENAIINAARDK 453

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
                +     A Y    D   +              R  ++G I      Y+LP     
Sbjct: 454 NLNTVVEYGEAAFYGPKLDFMVKDALG----------RSWQLGTI---QVDYNLPERFEL 500

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+KG+D + H  V +     G+M    A++     G   +W   + P +  ++ +    +
Sbjct: 501 TYKGSDDQLHRPVMIHRAPFGSMERFIAILLEHTAGNFPLW---LMPEQAIILCLSDKYE 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +     +K+   L         D+  E IG +   A++   P  +IVG +   ++ + I+
Sbjct: 558 I---YAKKVLNLLENHEIRALIDNRNESIGRKIRDAEMQKTPFMLIVGEEEEKNNTISIR 614

Query: 420 HRLTGIRE--DMSLEEVINYASHRFSN 444
                 +    +++EE     +   S 
Sbjct: 615 RHGQEGKGNITVTIEEFARIVNDEISK 641


>gi|319954103|ref|YP_004165370.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Cellulophaga
           algicola DSM 14237]
 gi|319422763|gb|ADV49872.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Cellulophaga
           algicola DSM 14237]
          Length = 646

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 158/443 (35%), Gaps = 48/443 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           Q   RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  
Sbjct: 237 QAKQRDHRKLGKELELFT-FSAKVGQGLPLWLPKGAALRERLEDFLKKAQKKAGYEMVIT 295

Query: 72  PTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P +   +L+V SG Y  YG +  +     + D+  +  P +     +++     SY++LP
Sbjct: 296 PHIGQKELYVTSGHYAKYGADSFQPIKTPKMDEEFLLKPMNCPHHCEVYNFKPHSYKDLP 355

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F +    +R E      G+ R R F   DA+ F  TP+     +  +    L +   L
Sbjct: 356 KRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPDQLDEEFKNVIDLSLYVLGSL 414

Query: 189 GLKS----IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           G  +    + +R  + P     S E    A++        K    F I S    F     
Sbjct: 415 GFDNFTAQVSVRDLTKPEKYIGSVENWEKAESAIINAATEKGLN-FVIESGEAAFYGPKL 473

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              +                          K    R  ++G I      Y+LP     T+
Sbjct: 474 DFMV--------------------------KDALGRQWQLGTI---QVDYNLPERFDLTY 504

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           KG+D + H  V +     G+M    A++     G   +W   + P +  ++ +    +  
Sbjct: 505 KGSDNELHRPVMIHRAPFGSMERFIALLLEHTGGNFPLW---LIPEQAIILPVSEKHEK- 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               EK+   L K       D   E +G +   A++   P  +IVG    ++  + ++  
Sbjct: 561 --YAEKVLKSLEKHEIRALVDKRNETVGKKIREAEMNKLPFMLIVGENEEAEETISVRRH 618

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  +++ +     +   ++
Sbjct: 619 GGEDLGSITISDFNELVTTEINS 641


>gi|126654116|ref|ZP_01725934.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126589396|gb|EAZ83546.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 568

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/246 (47%), Positives = 162/246 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLSKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S                
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAYSDTSDYAANIEMAEVIA 240

Query: 241 DIISLN 246
           D  + +
Sbjct: 241 DYQTSD 246



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 90/165 (54%), Gaps = 1/165 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GT YS  M+ TF    GK     MG YGIG  R++AAV E   D  G  W
Sbjct: 405 GIEVGHIFKLGTTYSAKMNGTFLDEQGKSQPFIMGCYGIGVSRILAAVAEHFQDENGFTW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP+ I ++ +   D+      +++Y  L     DV  DD  E+ G +FA ADL+G 
Sbjct: 465 PTQLAPYDIHVVPVNTKDEAQVALADELYGLLKSYRYDVLLDDRAERAGVKFADADLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P++V VG K +    VE+K R TG   +   EEVI++ +  F  N
Sbjct: 525 PVRVTVGKKAIE-GIVEVKFRQTGETFEWKKEEVIDHLNEFFRKN 568


>gi|58584729|ref|YP_198302.1| threonyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|73919844|sp|Q5GSG4|SYT_WOLTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58419045|gb|AAW71060.1| Threonyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 632

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 162/447 (36%), Gaps = 44/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L I  +   +A+   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 221 RNKDELNIYLKRLEEAKKRDHRRIAKDMDLFHIQEEAVGQVFWHEQGYTLYNVLESYIRK 280

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 281 KLINNGYAEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S+ +SYRNLP    +  +  R+E      G+MR R F   DA+ F +  E       K  
Sbjct: 341 SYTRSYRNLPIRMAEFGMCHRNESSGSLHGLMRVRGFTQDDAHIFCM-EEQVNSETVKFC 399

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG   I ++    P      +E    A+    +            P E   
Sbjct: 400 ALLKEVYSELGFNEISVKFSDRPNVRAGDNEVWDRAEKALLEAVKEAGLSYELNPGEGAF 459

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               K    R  + G        + LP 
Sbjct: 460 YGPKLEF---------------------------ILKDAIGRSWQCGT---LQVDFILPE 489

Query: 298 -MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A + GADG+  H V +    +G       ++   + GK  +W   +AP ++ ++ + 
Sbjct: 490 RLGAFYIGADGQKYHPVMLHRAILGTFERFIGILIEHYAGKFPLW---LAPTQLVILTVT 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +   +I   L + G  V  D   E++  +  +      P+  IVG   V+   
Sbjct: 547 N---EADNYATEISNVLKEQGVRVKTDLTNEKVSYKIRLHSSNKVPILWIVGKNEVASKT 603

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V +++  +  +E  S E+ +     + 
Sbjct: 604 VSVRNLGSEKQESSSCEKAVKLLLKKV 630


>gi|12845562|dbj|BAB26799.1| unnamed protein product [Mus musculus]
          Length = 722

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H  + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 306 LLKEWEKFQEEAKNRDHGKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 365

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 366 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 424

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 425 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 483

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 484 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 536

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 537 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 576

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 577 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 630

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 631 EYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 690

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  + ++EE +          
Sbjct: 691 DNKVHGERTVEETVRRLQQLKQTR 714


>gi|332295956|ref|YP_004437879.1| threonyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332179059|gb|AEE14748.1| threonyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 606

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 165/438 (37%), Gaps = 39/438 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD      +L L + M  +   G+  W P G      +   +R+E  +
Sbjct: 196 KNHLNWLEEVYKRDHRKLGKELDLYS-MADEVGAGLILWHPNGGVIRTIIEDYLRKEHVK 254

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + +  +W  SG +D Y + M    + + +     P +      I+ S  +
Sbjct: 255 RGYEIVYTPHMMNLKIWKISGHFDFYKENMYIF-ENDGQEYAVKPMNCPGHMMIYNSKTR 313

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F+++   +R E      G++R R F   DA+ F  T E  +     +     
Sbjct: 314 SYRDLPIRFFELGTVYRFERSGALHGLLRVRGFTQDDAHIF-CTNEQLQDEIIGVLNFAK 372

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G K + +   + P G   + E   LA          K+     I  +   +   
Sbjct: 373 DMMELFGFKYV-VSVGTRPDGSIGTDEQWNLATNSLISALKQKNIEFEIIDGDGAFYGPK 431

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I +  I                    D+L          ++    F    +++L     +
Sbjct: 432 IQVELI--------------------DALGRKWTGPTIQVD----FALPERFNL----EY 463

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG K   V +    +G+M      +  ++ G   ++P  ++P +I +I +K  D   
Sbjct: 464 ADKDGTKKRPVMIHRTVVGSMERFLGALIENYAG---VFPAWLSPIQIIIIPVK-EDSEL 519

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +LSK    V  D   E +  +   A+L   P  +++G K + +  + ++ R
Sbjct: 520 LEYSSEVEKKLSKEDYRVKVDKRNETLKYRIRDAELNRIPYILVIGKKELDEKLISLRTR 579

Query: 422 LTGIREDMSLEEVINYAS 439
                  MS+EE +   S
Sbjct: 580 GMKDEGQMSIEEFLKRLS 597


>gi|323527403|ref|YP_004229556.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323384405|gb|ADX56496.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 578

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 163/224 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +   
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYC 224



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + S   D+        +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGSNEVDYH----TTGVNWGRDLPEPVVADIRNVKKGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M+AT    +GK   ++MG YG+G  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMNATCLDENGKPQPMEMGCYGVGITRILGAAIEQNFDEKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     +  R+  +K+YA L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSEAVREQADKLYAELVDAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       + ++E       +  
Sbjct: 532 HRLVIGDRGLKEGKLEYQGRRDAEATLLPVDEAAQAVIAKVR 573


>gi|320352952|ref|YP_004194291.1| prolyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320121454|gb|ADW17000.1| prolyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 570

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP  +E P +AE+ SH+L++R G I + + G+Y++LP+G  AL  V  I+R+E
Sbjct: 1   MRYSQMLLPTTKETPSEAEVVSHQLLVRGGFIRKLTSGMYTYLPMGFLALQKVTEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q  DLW ESGR+  YG E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEILMPMVQPGDLWEESGRWKKYGPELLRFRDRHDRDYCLGPTHEEVVTDVARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY  M  +
Sbjct: 121 ELQSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDVDDAGASRSYEIMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+   + A+SG IGG  SHEF+VLA+TGE  +   +      
Sbjct: 181 YHRIFERCGLEFRAVEADSGAIGGSFSHEFMVLAETGEDTLVICESCSYAA 231



 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/179 (44%), Positives = 104/179 (58%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                  +         GIEVGHIF  GTKYS  M A F+ +DG++    MG YGIG  R
Sbjct: 387 TVNDRCPVCGGGLRLKEGIEVGHIFKLGTKYSEAMKANFQDSDGQEKPFVMGCYGIGVSR 446

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           VVAA IE +HD KGII+P  +APF++ ++N+   D+    A E +Y +L   G DV  DD
Sbjct: 447 VVAAAIEQNHDAKGIIFPVPLAPFQVIVLNLGPKDEGYCTAAEDLYTQLRAQGLDVLLDD 506

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             E+ GS+FA ADLLG P ++ VG  F  + KVEI+ R TG  + +SLEE   Y + R 
Sbjct: 507 RDERPGSKFADADLLGIPYRLTVGKTFEKEGKVEIRSRKTGETQVLSLEEATAYLAERV 565


>gi|299534746|ref|ZP_07048076.1| prolyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
 gi|298729834|gb|EFI70379.1| prolyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
          Length = 568

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/246 (47%), Positives = 160/246 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLTKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y  M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYEDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S                
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAYSDTSDYAANIEMAEVIV 240

Query: 241 DIISLN 246
           D    +
Sbjct: 241 DYQPSD 246



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/165 (41%), Positives = 90/165 (54%), Gaps = 1/165 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GT YS  M+ TF    GK     MG YGIG  R++AAV E   D  G  W
Sbjct: 405 GIEVGHIFKLGTTYSAKMNGTFLDEQGKAQPFIMGCYGIGVSRILAAVAEHFQDDNGFTW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP+ I ++ +   D+      E++Y  L     DV  DD  E+ G +FA ADL+G 
Sbjct: 465 PTQLAPYDIHVVPVNTKDEAQVALAEELYGLLKSYRYDVLLDDRPERAGVKFADADLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P++V VG K  ++  VE+K R TG   +   EEVI+  +  F  N
Sbjct: 525 PVRVTVGKK-ATEGIVEVKFRQTGETFEWKKEEVIDRLNEFFRKN 568


>gi|311030092|ref|ZP_07708182.1| prolyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 561

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+L+LR G I Q++ GIYS+LPLG+K L  V  ++REE
Sbjct: 1   MKQSNMLIPTLREVPADAEVKSHQLLLRAGYIRQNTSGIYSFLPLGKKVLKKVEDVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA+E+ +P +Q+A+LW ESGR+ SYG E++RL DR+++    G THEEV+T + R 
Sbjct: 61  MENAGAVELLMPAMQAAELWKESGRWYSYGPELMRLNDRHNREFALGATHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ KFRDE RPRFG++R REFLMKDAYSF    E    +Y KMF +
Sbjct: 121 EVKSYKKLPLSLYQIQTKFRDEKRPRFGLLRGREFLMKDAYSFHANAESLDETYEKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL    + A+SG +GG  +HEF+VL+D GE  +  S
Sbjct: 181 YSNIFTRLGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYS 224



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 98/160 (61%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GT+YS  M A F   +G++  + MG YGIG  RV+AA++E  HD  GI+
Sbjct: 403 KGIEVGHIFKLGTRYSEAMGANFLDENGRNQPMIMGCYGIGVSRVLAAIVEQYHDENGIV 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +V PF + +I +   ++      E+IY+ L   G  V  DD  E+ G +FA ADL+G
Sbjct: 463 WPKAVTPFDVHVIPVNIKNEAQASLAEEIYSELKNSGLAVLMDDRQERPGVKFADADLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            P++V VG K   +  VE+K R TG  E++S+EE+I    
Sbjct: 523 LPVRVTVGKK-AEERIVEVKWRETGDMEELSVEELIQKLR 561


>gi|297539468|ref|YP_003675237.1| prolyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258815|gb|ADI30660.1| prolyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 573

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P DAE+ SH LM+R G+I +   G+YSW+PLG + L  V  I+R+E
Sbjct: 1   MRASQFFFNTQKEAPNDAELPSHILMVRAGLIKRLGSGLYSWMPLGLRVLRKVETIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+ +   +GPTHEEV+TDI RS
Sbjct: 61  MNKAGALELLMPAVQPRELWDETGRWAVFGPQMLKITDRHSREFCFGPTHEEVITDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHTDFASLETTYANMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F+RLGLK   ++A++G IGGD SHEF VLAD+GE  +          
Sbjct: 181 YSNVFNRLGLKFRAVKADTGAIGGDGSHEFHVLADSGEDGLAYCDTSDYAA 231



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 3/181 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D+ P+ K      RGIEVGHIF   TKYS  M+AT+     +   ++MG YGIG
Sbjct: 390 RNVVEGDASPDGKGILSLCRGIEVGHIFQLRTKYSEAMNATYLDEASQTQVMEMGCYGIG 449

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R+V A IE  +D +GII+P S+APF +++  I     +    A  KIYA L+  G + 
Sbjct: 450 VSRIVGAAIEQGNDARGIIFPKSMAPFTVTICPIGYDKSEAVSAAANKIYADLNAAGIEA 509

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD GE+ G  FA ADL+G P ++++G + ++D  VE K R     + ++L+ V+ +  
Sbjct: 510 LLDDRGERPGVMFAEADLMGIPHRLVIGERGLADGTVEYKGRTDAEAQMVALKNVVEFMQ 569

Query: 440 H 440
            
Sbjct: 570 K 570


>gi|169827162|ref|YP_001697320.1| prolyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
 gi|226701308|sp|B1HQZ9|SYP_LYSSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168991650|gb|ACA39190.1| Prolyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
          Length = 568

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/246 (47%), Positives = 162/246 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLSKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S                
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAYSDTSDYAANIEMAEVIA 240

Query: 241 DIISLN 246
           D  + +
Sbjct: 241 DYQTSD 246



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/165 (41%), Positives = 91/165 (55%), Gaps = 1/165 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GT YS  M+ TF    GK     MG YGIG  R++AAV E   D  G  W
Sbjct: 405 GIEVGHIFKLGTTYSAKMNGTFLDEQGKSQPFIMGCYGIGVSRILAAVAEHFQDENGFTW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP+ I ++ +   D+V     +++Y  L     DV  DD  E+ G +FA ADL+G 
Sbjct: 465 PTQLAPYDIHVVPVNTKDEVQVALADELYGLLKSYRYDVLLDDRAERAGVKFADADLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P++V VG K  ++  VE+K R TG   +   EEVI+  +  F  N
Sbjct: 525 PVRVTVGKK-ATEGIVEVKFRQTGETFEWKKEEVIDRLNEFFRKN 568


>gi|330720665|gb|EGG98912.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 576

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ +  L+E+P DA + SHKLMLR GMI + + G+Y+W PLG + L     IIREE
Sbjct: 1   MRATQFPINTLKESPADAAVISHKLMLRAGMIRRLAAGLYTWSPLGLRVLRKSENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  +G E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNRAGALELLMPAVQPAELWEETGRWGQFGDELLRVKDRHGREFCIGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREFLMKDAYSF L  E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPVNFYQIQTKFRDERRPRFGVMRSREFLMKDAYSFHLDAESLQQTYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F R+GL    + A+SG IGG  S EF VLA++GE  +  S       
Sbjct: 181 YCRVFERMGLVFRAVDADSGSIGGSQSQEFHVLAESGEDLIAFSDSSDYAA 231



 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 5/204 (2%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +  +           +D+      D  P    K V  RGIEVGHIF  G KY+  M+AT
Sbjct: 371 HMTGVNWDRDCSITDVADIREVVEGDPSPCGNGKLVFKRGIEVGHIFQLGQKYAAAMNAT 430

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQV 360
                G+   + MG YGIG  RVVAA IE ++D  GIIWP  +APF++ ++ +     + 
Sbjct: 431 VLNEKGQAQVMTMGCYGIGVTRVVAAAIEQNNDDNGIIWPAGLAPFQVGIVPMNYDKSEQ 490

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            ++   ++Y  L ++G DV+ DD  ++   G +FA  DL+G P ++++  + + ++++E 
Sbjct: 491 VKETANRVYQELKELGIDVYMDDRDKKTSPGVKFADMDLIGIPHRIVISDRGLKENQIEY 550

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R +  R++++ ++VI +     
Sbjct: 551 QERRSQERQNLAADQVIAFIKETL 574


>gi|218134037|ref|ZP_03462841.1| hypothetical protein BACPEC_01927 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991412|gb|EEC57418.1| hypothetical protein BACPEC_01927 [Bacteroides pectinophilus ATCC
           43243]
          Length = 585

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 167/443 (37%), Gaps = 36/443 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L +L+E   RD       + L   M+     +G+  +LP G      +   I++++ + G
Sbjct: 172 LQLLEEAKERDHRKIGKDMGLF--MVDDLIGRGLPMFLPKGYVIWQELENYIKDKERKLG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            + +  P + + +L+  SG +D Y + M    D + ++ +  P +      I+ + + SY
Sbjct: 230 YLHVMTPCIGTVNLYKTSGHWDHYKENMFPAMDVDGESFVLRPMNCPHHMMIYANRMHSY 289

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +I   FR E      G+ R R F   DA+ F +TPE  +  + ++       
Sbjct: 290 KDLPIRIGEIAHDFRYESSGTLKGIERGRHFCQNDAHIF-VTPEQIEDEFKRVVDLIFST 348

Query: 185 FHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +   G+     + +   P      H+   + +  E  +          +     ++ + I
Sbjct: 349 YKDFGITDYRCVLSLRDPADKVKYHDDDEMWNKAEDALRT-------VLNDLGIEYTEEI 401

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  +  ++     +S   ++    F    K++L    T+ 
Sbjct: 402 GEA----------AFYGPKLDVNVKPAVGNEYTLSTCQLD----FCLPAKFNL----TYI 443

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG+    V +    +G++    A I     G    W   +AP ++ ++ +K  ++   
Sbjct: 444 DKDGEKKTPVVLHRAILGSLDRFMAYILEETKGNLPTW---LAPVQVRVMPVKTDNEELM 500

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I + L +    V  DD GE++G +     +   P  +++G     D  V  +   
Sbjct: 501 EYAHEICSALEEKNVRVELDDRGEKLGYRMREGQIQKVPYLLVIGFNEKEDRTVSYRLHG 560

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E +        N 
Sbjct: 561 EADTTVLGLDEFVEKIDSEIKNK 583


>gi|159030629|emb|CAO88297.1| thrS [Microcystis aeruginosa PCC 7806]
          Length = 599

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 165/448 (36%), Gaps = 51/448 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 187 EEALKRDHRKLGKELGLFI-FSDSVGPGLPLWTPKGTLIRSLLEDFLKKEQLKRGYLPVV 245

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  +   ++++       +  P +      I++S ++S
Sbjct: 246 TPHIARVDLFKISGHWQKYKEDMFPMMADDEESASKEIGFVLKPMNCPFHIQIYKSDLRS 305

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F +TPE     +  +    L 
Sbjct: 306 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDKEFLSVVDLILT 364

Query: 184 IFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +F  L LK+   R        D    S E    A +   +   +     F  P E   + 
Sbjct: 365 VFKSLQLKNFKARLSFRDPESDKYIGSDEAWEKAQSAIRKAVQTLGMDYFEAPGEAAFYG 424

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               +    R  ++G +      Y+LP   
Sbjct: 425 PKLDF---------------------------IFQDALEREWQLGTV---QVDYNLPERF 454

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG +   V +     G++  +  ++   + G   +W   +AP +I L+ +   
Sbjct: 455 ELEYVAEDGNRKRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPVQIRLLPV--- 508

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++  ++  +G     D  GE++G     A+    P+  +VG+K +  + + 
Sbjct: 509 SDSQLDYAKEVTVKMQLLGIRAETDTSGERLGKMIRNAETAKIPVMAVVGAKEMESNSLS 568

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R  G    +S+EEV+        N+
Sbjct: 569 IRTRAAGDLGVISVEEVVAKLESAIQNH 596


>gi|262276504|ref|ZP_06054313.1| prolyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262220312|gb|EEY71628.1| prolyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 571

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 121/303 (39%), Positives = 164/303 (54%), Gaps = 24/303 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLQKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  INNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF M DAYSFDL  EG + SY  M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRAREFSMMDAYSFDLDKEGLQKSYEAMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y   F R+GL   P+ A++G IGG  SHEF VLA++GE  +  S +              
Sbjct: 181 YCAAFDRMGLDYRPVLADTGAIGGSASHEFHVLANSGEDIIAFSSESDYAANIEMAEAVA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                                        + P  +       +   I     ++ LP+  
Sbjct: 241 PAGER------------------------AAPTQEMTLVDTPDAKTIAQLVEQFGLPIEK 276

Query: 301 TFK 303
           T K
Sbjct: 277 TVK 279



 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  K      RGIEVGHIF  GT YS  M
Sbjct: 366 DDKHYFGINWGRDVELGDVADIRNVVEGDPSPCGKGTIQLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
                GADGK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF ++++ +  H 
Sbjct: 426 GCGVLGADGKNVILEMGCYGIGVSRVVAAAIEQNHDENGIIWPDAIAPFTVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  +DA EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVKDAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGIPHTIIIGERSMDNGVFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            KHR  G +  + +E ++ +   + +
Sbjct: 546 YKHRRNGEKVPVDMENMVEFLKAKLA 571


>gi|332526531|ref|ZP_08402643.1| prolyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332110799|gb|EGJ10976.1| prolyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 582

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MKASQTFISTLKEAPADAEIVSHKLMMRAGMIKRLGAGIYNYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW+E+GR+ +YG E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWMETGRFQAYGPELLRVKDRHDRDFVIQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TFY +Q KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELRSYKQLPRTFYHVQTKFRDERRPRFGVMRGREFTMKDAYSFDRDKASALKSYDTMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    + A++G IGGD SHEF V+ADTGE  +   
Sbjct: 181 YCAIFDRFGLTYRAVAADTGAIGGDASHEFQVIADTGEDAIVYC 224



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 4/213 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              +  D         +        +D+ N    D  P+ +      RGIEVGH+FY GT
Sbjct: 369 CGANEPDFHIAGVNWGRDLPEPDLVADIRNVVAGDPSPDGQGVLAIQRGIEVGHVFYLGT 428

Query: 293 K-YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           K YS PM AT+   +GK    +MG YGIG  R++ A IE +HD +GIIWPD++APF +++
Sbjct: 429 KKYSEPMGATYLDENGKPQPFEMGCYGIGVTRILGAAIEQNHDERGIIWPDAIAPFTVAV 488

Query: 352 INIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
             I        + A ++++  L+ +G DV  DD GE+ G+ FA  +L+G P +V+V  + 
Sbjct: 489 CPIGYDRSADVKAAADQLHDELAALGIDVVLDDRGERPGAMFADWELIGVPHRVVVSDRG 548

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +    VE++ R       + L E + +   R  
Sbjct: 549 LKAGTVEVQGRRETAAHTVPLAEAVAFVKGRLK 581


>gi|149057086|gb|EDM08409.1| threonyl-tRNA synthetase-like 2, isoform CRA_b [Rattus norvegicus]
          Length = 708

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 157/442 (35%), Gaps = 46/442 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A    H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 297 EKFQEEARSRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTE 356

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +
Sbjct: 357 VLSPNMYNSKLWETSGHWQHYSNNMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREM 415

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F +  E  +            ++  
Sbjct: 416 PVRFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCM-VEQIEEEIKGCLHFLQSVYST 474

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 475 FGFSF-QLNLSTRPEHFLGETEIWDEAERQLQNSLTGFGKPWKINPGDG----------- 522

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 523 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 565

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K+  V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C +  
Sbjct: 566 DDKNRPVIIHRAILGSVERMIAILSENYGGK---WPLWLSPRQVMIIPVGP---ACENYA 619

Query: 366 EKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            ++     + G   DV  DD    +  +   A L  +   ++VG K   ++ V ++ R  
Sbjct: 620 LQVSKECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKLNNSVNVRTRDN 678

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            I  ++S+  VI    +   + 
Sbjct: 679 KIHGEISITSVIEKLKNLKKSR 700


>gi|325144523|gb|EGC66822.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325208298|gb|ADZ03750.1| prolyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 599

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 365 LGPVGFAGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 424

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 425 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQVMEMGCYGIGITRVVAAAIE 484

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 485 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 545 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 598


>gi|323339586|ref|ZP_08079860.1| threonine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323092981|gb|EFZ35579.1| threonine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 685

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 161/436 (36%), Gaps = 36/436 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           + + RD  +  + L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 275 EAHERDHRVIGNNLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIIDKEVSWGYEHVY 332

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+ +SG +D Y ++M    D  D  ++   P +      I+  HI+SYR+LP
Sbjct: 333 TPILANVDLYKQSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYNRHIRSYRDLP 392

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +TP+  +  + +     + ++H  
Sbjct: 393 LRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTF-VTPDQIEAEFKRTLQLMVEVYHDF 451

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T  +   D M            D +     
Sbjct: 452 NINDYRFRLSYR--------------DPKNTHKYYDDDEMWEKSQRMLKAAMDDLG--LE 495

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + GADG+
Sbjct: 496 YFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLD----FLLPERF----DLKYVGADGE 547

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   GI + M    A +   + G    W   +AP ++ +I +     +  D   K
Sbjct: 548 EHRPVMIHRGIVSTMERFTAYLTEMYKGAFPTW---LAPKQVEVIPVNL--DLHTDYARK 602

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + + L+     V  DD  E++G +   A +   P  ++VG        V ++       E
Sbjct: 603 LASALAARQIRVSVDDRNEKMGYKIRQAQVNKVPYTLVVGDNEKEQGTVTVRRYGQEKTE 662

Query: 428 DMSLEEVINYASHRFS 443
            M+ ++      H   
Sbjct: 663 TMAFDDFKKILDHDLE 678


>gi|296132879|ref|YP_003640126.1| prolyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031457|gb|ADG82225.1| prolyl-tRNA synthetase [Thermincola potens JR]
          Length = 579

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/265 (44%), Positives = 167/265 (63%), Gaps = 1/265 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH LMLR G I + + GIY++LPL  + +  V+ I+REE
Sbjct: 1   MRASEILAPTLREVPAEAEVISHILMLRAGFIRKSASGIYTYLPLANRVIKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR+D YG E+ RL DR+ ++   GPTHEE++TD+ R+
Sbjct: 61  MDRKGGQELILPIMQPAELWQESGRWDVYGDELFRLKDRHGRSFALGPTHEEIITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SYNKMF +
Sbjct: 121 EIRSYKQMPMLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLDESYNKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F R GLK  P+ A+SG IGG  +HEF+VLA++GE  +       ++    E  +  
Sbjct: 181 YTRVFSRCGLKFRPVEADSGAIGGSSTHEFMVLAESGEAAIVYC-TECEYAANVEKAEAC 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
            + ++  +        A  +    E
Sbjct: 240 SVDTVTPMDMLPMEEVATPNARTIE 264



 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 107/181 (59%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     ARGIEVG IF  GTKYS  + A F   +GK+ Y+ MG YGIG  R VAA 
Sbjct: 392 CPRCNGTLAMARGIEVGQIFKLGTKYSKALGAKFLDENGKEQYIVMGCYGIGITRTVAAA 451

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE +HD  GIIWP S+APF++ ++ + A      +  E+IY++L + G +V  DD  E+ 
Sbjct: 452 IEQNHDQDGIIWPMSIAPFQVIVVPVSAKSSEQVELAERIYSQLLEAGIEVIIDDRNERP 511

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +F  ADL+G+P++V VG+K V + +VE++ R TG   D+ +EEV+ Y  +        
Sbjct: 512 GVKFKDADLIGYPIRVTVGNKAVDEGRVEVRLRKTGDTRDLPVEEVVTYVKNLVDEEMKR 571

Query: 449 L 449
           L
Sbjct: 572 L 572


>gi|74142262|dbj|BAE31895.1| unnamed protein product [Mus musculus]
          Length = 722

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 306 LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 365

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 366 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 424

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 425 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 483

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 484 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 536

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 537 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 576

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++   + GK   WP  ++P ++ ++ +      C 
Sbjct: 577 HDGDDKKRPVIVHRAILGSVERMIAILTEKYGGK---WPFWLSPRQVMVVPVGP---TCD 630

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 631 EYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 690

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  + ++EE +          
Sbjct: 691 DNKVHGERTVEETVRRLQQLKQTR 714


>gi|58617659|ref|YP_196858.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|73919787|sp|Q5FGP1|SYT_EHRRG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58417271|emb|CAI28384.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 633

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 156/437 (35%), Gaps = 44/437 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +++   RD      +L L    I   + G   W   G      +   IR++    G
Sbjct: 231 YLNNLIEVEKRDHRKIGKELELF--HIQNEALGQIFWHEKGLIIYRIIENYIRKKLENNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P L S  LW +SG +D + + M  L++ ++K +   P +      IF S I+SY
Sbjct: 289 YIEVKTPYLLSKTLWEQSGHWDKFREHMF-LSEIDNKVVAIKPMNCPCHVQIFNSKIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R E      G+MR R F   DA+ F  T +       K     + +
Sbjct: 348 KDLPLRMAEFGTCHRYEASGALHGLMRVRSFTQDDAHIF-CTEDQIIEEALKFCNLLMEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++    P     S +    A+        + +      P +   +   + 
Sbjct: 407 YEVFGFKDILVKFSDRPEKRAGSDKIWDKAEEALKASVKAANLNYVLNPGDGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 FTL---------------------------KDAIGREWQCGT---LQMDFVLPERLGAYY 496

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DGK H+  M     +G +     ++   H GK  IW   +AP ++S++ I    +  
Sbjct: 497 TGSDGKKHHPIMLHRAILGTIERFIGILIEHHSGKLPIW---LAPVQLSILTIT---EDA 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  +  K       D   E+I  +         P+  I+G K +    V I++ 
Sbjct: 551 IDYAISLKHKAMKQNIRAEVDITNEKINYKIRSHISKKIPVLWIIGKKEIETESVSIRYL 610

Query: 422 LTGIREDMSLEEVINYA 438
            +  +  MS ++ +   
Sbjct: 611 ESKDQHIMSSDKALKTL 627


>gi|30249296|ref|NP_841366.1| prolyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718]
 gi|81838727|sp|Q82UZ8|SYP_NITEU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30180615|emb|CAD85228.1| Prolyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 568

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/291 (43%), Positives = 173/291 (59%), Gaps = 1/291 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P +AE+ SH+LMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFLATLKEAPAEAELISHRLMLRAGLIKRLGSGLYTWMPLGLRILHKIEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +  A+LW E+GR+D +G +ML++ DR+     +GPTHEEV+ DI R 
Sbjct: 61  MNNSGALELLMPAVHPAELWQETGRWDVFGPQMLKIQDRHKHDFCFGPTHEEVIVDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  + +Y  M  +
Sbjct: 121 EIKSYRQLPINFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHADVDSLEQTYRLMQET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  + FC        I       
Sbjct: 181 YSRIFTRIGLKFRAVAADTGAIGGSGSHEFHVLADSGEDAIAFCPASDYAANIELAEAVP 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
             I                     +   F  +P  + + A  +  G  FY 
Sbjct: 241 HGIPRKEPAGIMAKIATPDRKSCQDVADFLGIPVEQTLKALAVTAGGKFYL 291



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 3/184 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+ N    D  P+ K      RGIEVGH+F   TKYS  M AT+    G+   ++MG Y
Sbjct: 381 FDIRNIVAGDPSPDGKGVLEICRGIEVGHVFQLRTKYSEKMKATYLDESGQTRIMEMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE ++D +GII+P ++APF++S+I +  H  Q  R   EK+Y      G
Sbjct: 441 GIGVSRIVAAAIEQNYDERGIIFPQTIAPFQLSIIPVGYHKSQQVRTEAEKLYQACRSAG 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P ++++G + + +  VE + RL    + +SL E  +
Sbjct: 501 IEVLLDDREERPGVMFADQELIGIPHRIVIGERNLREGMVEYQGRLDKTPQMLSLSEAAS 560

Query: 437 YASH 440
             S 
Sbjct: 561 IISK 564


>gi|62320472|dbj|BAD94986.1| putative protein [Arabidopsis thaliana]
          Length = 426

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 154/449 (34%), Gaps = 40/449 (8%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G    + +    ++  
Sbjct: 15  QLKAYLHFKEEAKRRDHRRIGQDLDLFS-IQDEAGGGLVFWHPKGAIVRNIIEESWKKMH 73

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +  ADLW  SG  D Y + M    +  D+     P +      +++  
Sbjct: 74  VEHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQMEIEDELYQLRPMNCPYHILLYQRK 133

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 134 RQSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 192

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  R G     +   + P       +    A          + +             
Sbjct: 193 TEEILSRFGFNKYEVNLSTRPEKSVGGDDIWEKATCALRDALDDRGWSYEVDEGGG---- 248

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D+L    + S   ++    F    ++      
Sbjct: 249 ----------------AFYGPKIDLKIEDALGRKWQCSTIQVD----FNLPQRF----DI 284

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +  K   + +    +G++     V+   + G   +W   ++P ++ ++ +  +  
Sbjct: 285 TYVDTNSDKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLW---LSPVQVRVLPVTDN-- 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C+++  +L   G        GE++      A+    PL  +VG K V    V ++
Sbjct: 340 -QLEFCKEVSKKLRACGVRAEL-CHGERLPKLIRNAETQKIPLMAVVGPKEVETGTVTVR 397

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R  G    + ++++IN  +        +
Sbjct: 398 SRFGGELGTIPVDDLINKINIAVETRTAL 426


>gi|227877040|ref|ZP_03995129.1| theronyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256843644|ref|ZP_05549132.1| threonyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256850110|ref|ZP_05555540.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|293381761|ref|ZP_06627738.1| threonyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|227863358|gb|EEJ70788.1| theronyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256615064|gb|EEU20265.1| threonyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256713082|gb|EEU28073.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|290921681|gb|EFD98706.1| threonyl-tRNA synthetase [Lactobacillus crispatus 214-1]
          Length = 644

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 160/443 (36%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R         +   G+  W+P G      V   I + +   G
Sbjct: 228 EDLKRRAEIKERDHRTIGRDLDFFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 288 YQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 348 YRDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQTEFAKILKLIMD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M            D +
Sbjct: 407 VYKDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDL 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 453 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 502

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP ++ +I +        
Sbjct: 503 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQVKIIPVNL--DAHG 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L+K G     D   E++G +   +     P  +++G + + +  V ++   
Sbjct: 558 EYAEKVRQELAKRGFRAEVDTRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYG 617

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T      SL + IN       + 
Sbjct: 618 TDEEISKSLTDFINEIDADVKSY 640


>gi|319649026|ref|ZP_08003235.1| ThrZ protein [Bacillus sp. BT1B_CT2]
 gi|317389020|gb|EFV69838.1| ThrZ protein [Bacillus sp. BT1B_CT2]
          Length = 639

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 169/445 (37%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + Q    D      +L L   M  + + G+  +LP GQ     +  + RE QN
Sbjct: 232 LNEYLYFLEQAAKHDHRQLGKQLDLF--MFSEEAPGMPFYLPKGQIVRKELEKLSRELQN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + +  LW +SG +D Y + M   ++ ++      P +      IF++++
Sbjct: 290 NASYDEVHTPFMMNYRLWEKSGHWDHYQENMY-FSEVDNTKFAIKPMNCPGHMLIFKNNL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F +  +  +    K+F   
Sbjct: 349 YSYRDLPIRLAEYGQVHRHEFSGSLNGLLRVRTFCQDDAHIF-VREDQIESEIKKVFHLI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++  +G +   +   + P                      +    +    S     DD
Sbjct: 408 DQVYRTIGFEY-SVELSTRP-----------------DDSLGNNHLWEVSEGSLKNVLDD 449

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E   A Y    D H +   D+L  + +     ++    F    K+      T
Sbjct: 450 LAIKYQVNEGDGAFYGPKIDFHIK---DALKRSHQCGTIQLD----FQMPEKF----DLT 498

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +    V +     G++     ++     G   +W   +AP ++ +I I     +
Sbjct: 499 YINHNNEKVRPVVIHRAIFGSIDRFFGILIEHFAGAFPVW---LAPIQVQIIPI---SHI 552

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C  I + L ++G  V  ++  +++G +   A +   P  ++VG   + ++ V ++ 
Sbjct: 553 HLEYCLGIKSELKQLGIRVQINESNQKLGYKIREAQVQKIPYTLVVGDNEIKENGVNVRK 612

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                ++++S+E        +    
Sbjct: 613 YGEEQQKNVSIESFKKNILQQIKTR 637


>gi|319638108|ref|ZP_07992872.1| prolyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400753|gb|EFV81410.1| prolyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 570

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFKGKVYADFATEKGADWIIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DEQGRLKLARGIEVGHVFQLRDKYAKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAGLLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ EV+        
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAVSEVVAKVLAALK 569


>gi|293603409|ref|ZP_06685836.1| proline--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292818182|gb|EFF77236.1| proline--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 576

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/283 (44%), Positives = 176/283 (62%), Gaps = 4/283 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKIIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G+  SY+ M+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGALKSYDTMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF+RLGL+   + A++G IGG  SHEF V+A+TGE  +  + +         N +  
Sbjct: 181 YMRIFNRLGLQFRAVAADTGSIGGTRSHEFQVIAETGEDLLVYNAETDYAA----NIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + ++L       T   A  +     K  D          + I+
Sbjct: 237 EAVALYPTRGAATQTMADVATPGAAKCEDVAKLLGLPLDKTIK 279



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D         +        +D+ N    D  P+ K      RGIEVGH+FY G 
Sbjct: 363 CGANKEDFHIQGVNWGRDLPEPELVADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGK 422

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + ATF    GK   ++MG YGIG  R+V A IE +HD +GIIWP ++APF++ + 
Sbjct: 423 KYSEALKATFLDETGKPAVLEMGCYGIGVTRIVGAAIEQNHDARGIIWPRAIAPFEVVIC 482

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  RD  +K+Y  L   G DV  DD   + G  FA  +L+G PL+V VG + +
Sbjct: 483 PVGWGKSETVRDTAQKLYESLLARGVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGL 542

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +D  VE++ R       + +E  +     + 
Sbjct: 543 NDGVVELQARRETEAAKIPVESALEAVLTKL 573


>gi|307169877|gb|EFN62386.1| Threonyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 689

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 158/438 (36%), Gaps = 43/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + +       H+ S G   + P G    + +   IR E  + 
Sbjct: 275 LKEWEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKR 334

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW  SG +  Y + M    D   +     P +      IF    +S
Sbjct: 335 GFQEVISPNIYNSKLWQTSGHWQHYAENMFSF-DVEKETFALKPMNCPGHCMIFDVRCRS 393

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F  + E  K            
Sbjct: 394 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CSVEQIKDEMIAALEFLRH 452

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P     S +    A+    +   +        P +        
Sbjct: 453 VYGIFGFTF-NLCLSTRPEKYLGSLKVWDRAEKALEESLNAFGQPWTLNPQDG------- 504

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  L D+L    + +   ++    F    +++L    ++ 
Sbjct: 505 -------------AFYGPKIDITLMDALKRAHQTATIQLD----FQLPMRFNL----SYV 543

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +G K   V +    +G++  + A++  S+ GK   WP  ++P +  ++ + +      
Sbjct: 544 NENGEKTRPVIIHRAILGSVERMIAILTESYGGK---WPYWLSPRQAMVVPVVSQ---FD 597

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   ++  +L   G  V  D D  + +  +   A L  F   ++VG K  +   V I+ R
Sbjct: 598 EYAYEVKQKLWDAGVMVEVDTDSSDTLNKKIRNAQLAQFNFILVVGEKERNAGTVNIRTR 657

Query: 422 LTGIREDMSLEEVINYAS 439
              +  +M++EE+I    
Sbjct: 658 DNVVHGEMAVEELIAKLK 675


>gi|164685792|ref|ZP_01945930.2| prolyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165918393|ref|ZP_02218479.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|164601306|gb|EAX33436.2| prolyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917899|gb|EDR36503.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 334]
          Length = 564

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 166/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM  + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMFRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +     
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDESDYAA 231



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D     ++  +   P  + +D+      D  P+ K      RGIEVG +F  G KYS  M
Sbjct: 363 DDFHWINVNWERDVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H 
Sbjct: 423 NATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHK 482

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    VE
Sbjct: 483 SYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVE 542

Query: 418 IKHRLTGIREDMSLEEVIN 436
            K R +   E++SLE V++
Sbjct: 543 YKARKSKEAENVSLENVLS 561


>gi|254673039|emb|CBA07634.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 599

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 365 LGPVGFKGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 424

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 425 DGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 484

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 485 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 545 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 598


>gi|195035423|ref|XP_001989177.1| GH11579 [Drosophila grimshawi]
 gi|193905177|gb|EDW04044.1| GH11579 [Drosophila grimshawi]
          Length = 493

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 162/439 (36%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +  +IR E  + 
Sbjct: 80  LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMNLIRGEYRKR 139

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y   M       +K     P +      IF +  +S
Sbjct: 140 GFQEVISPNIYNAKLWMTSGHWQHYADNMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 198

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 199 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLDFLRH 257

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E     D  E  +  S D    P    + D     
Sbjct: 258 VYTIFGFSFQLV-LSTRPEQYLGELE---QWDAAEKALAESLDEFGMPWKENHGDG---- 309

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L     + 
Sbjct: 310 -------------AFYGPKIDITIMDALKRPFQCATIQLD----FQLPIRFNL----NYI 348

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +        
Sbjct: 349 ADDGEKKRPVIIHRAILGSVERMIAILTENYAGK---WPFWLSPRQVMVVPVGP---AYD 402

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 403 EYAKSVRDQLYAAGFMSESDCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 462

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I+    
Sbjct: 463 DNKVHGEVSVAELISKLQK 481


>gi|227524682|ref|ZP_03954731.1| threonine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088166|gb|EEI23478.1| threonine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 658

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 163/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           + + RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 249 EAHERDHRVIGNQLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIVDKEVANGYEHVY 306

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+ +SG ++ Y ++M    D  D + +   P +      I+  HI+SYR LP
Sbjct: 307 TPVLANLDLYKQSGHWEHYREDMFPPMDMGDGEELELRPMNCPSHIQIYNHHIRSYRELP 366

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  +  +    + ++H  
Sbjct: 367 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIQEEFQNILKLMVEVYHDF 425

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S      D + L+ +
Sbjct: 426 DINDYTFRLSYR--------------DPENTEKYFDDDEMWNRAQSMLKGAMDELGLDYV 471

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + G DGK
Sbjct: 472 --EAEGEAAFYGPKLDVQTKTALGNEETLSTIQLD----FMLPERF----DLHYVGEDGK 521

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ + M    A +   + G    W   +AP ++ +I +        D  ++
Sbjct: 522 QHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPHQVKIIPVS--QDKHGDYAKQ 576

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  +L ++      D   E++G     A     P  ++VG + V+   V ++       +
Sbjct: 577 INDQLRRLKIRSSVDTRAEKMGYLIRDAQTHKIPYTLVVGDEEVNGKSVSVRRYGEKETQ 636

Query: 428 DMSLEEVINYASHRFSNN 445
             SL+  ++      ++ 
Sbjct: 637 AESLDTFVDEIQKDIASY 654


>gi|325136158|gb|EGC58766.1| prolyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 599

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D     S      A      D+ N    D  P  + +   
Sbjct: 373 KVYADFATEKGADWVIGANEDGYHYTSFNFGRDAAEPEFVDLRNVVEGDESPDGQGRLKL 432

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 552

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 553 LGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTALLN 598


>gi|325128468|gb|EGC51349.1| prolyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 570

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D     S      A      D+ N    D  P  + +   
Sbjct: 344 KVYADFATEKGADWVIGANEDGYHYTSFNFGRDAAEPEFVDLRNVVEGDESPDGQGRLKL 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 524 LGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 569


>gi|326404590|ref|YP_004284672.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325051452|dbj|BAJ81790.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 640

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 145/430 (33%), Gaps = 39/430 (9%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R      + + + G   W   G +    V A +R  Q   G IE+  P 
Sbjct: 238 EAERRDHRKIGRQMDLFHMQEEAVGSVFWHEKGWRLYRTVEAYMRRRQEEFGYIEVRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG +D+Y   M      + DK +   P +      IF   ++SYR LP   
Sbjct: 298 LLDRKLWEASGHWDNYRSHMFIAEVEDEDKVLAVKPMNCPCHVQIFNHGLRSYRELPLRM 357

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F  T +       +      R++   G  
Sbjct: 358 AEFGACHRYEPSGALHGIMRVRAFAQDDAHIF-CTEDQIADETVRFVEMLRRVYADFGFP 416

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              ++    P     S E    A+        +        P E                
Sbjct: 417 EFAVKFADRPTPRSGSDEVWDKAEAALRSACETAGVTFTVNPGEG--------------- 461

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A         L D++  + +     ++          Y            G+   
Sbjct: 462 -----AFYGPKLEFVLRDAIGRDWQCGTLQVDFVLPERLDASYVTA-------ESGRARP 509

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+      ++  +  G+  +W   +AP + ++ +I        D  E + A+
Sbjct: 510 VMLHRAIVGSFERFIGILIENCAGRFPLW---LAPTQAAVASIVTD---ANDYAETVAAK 563

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V  D   E+I ++     L   P  ++VG +      V I+   +  ++ M+L
Sbjct: 564 LKEAGLAVATDTRNEKINAKVRDLSLALVPNILVVGRREAEQQTVSIRRLGSDKQDSMTL 623

Query: 432 EEVINYASHR 441
           +E +      
Sbjct: 624 DEAVATLKAE 633


>gi|225076521|ref|ZP_03719720.1| hypothetical protein NEIFLAOT_01569 [Neisseria flavescens
           NRL30031/H210]
 gi|224952200|gb|EEG33409.1| hypothetical protein NEIFLAOT_01569 [Neisseria flavescens
           NRL30031/H210]
          Length = 570

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFARLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D            A      D+ N    D  P  + +   
Sbjct: 344 KVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISPDEQGRLKL 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRNKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +W  ++APF++ ++ +     +  R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 464 VWTKAMAPFEVVIVPMNYKKSEAVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ EV+       +
Sbjct: 524 LGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAISEVVAKVLAALN 569


>gi|110598676|ref|ZP_01386941.1| threonyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110339729|gb|EAT58239.1| threonyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 657

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 159/454 (35%), Gaps = 44/454 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K ++ +L+E  R D      +L L   +  +   G+  WLP G    + + + ++EE
Sbjct: 237 KQLKEYVTLLEEAKRRDHRKLGAELELFM-LSAEVGSGLPIWLPKGAIIRNELESFLKEE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMT 115
           Q + G + +  P + + +L+  SG Y  Y          +D+       +  P +     
Sbjct: 296 QRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEEGRKEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +   P+      
Sbjct: 356 LIYSSKMRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIY-CRPDQLVDEI 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                    +F  LG   +  R                + D      +     +      
Sbjct: 415 CSAIELTQFVFGTLGFNDVQTRLS--------------MHDPENQTKYGGTAEVWAQAEK 460

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +  +  D + +   +    A +         +             R  ++G +      Y
Sbjct: 461 DVKEAADRMGIEYFIGIGEASFYGPKIDFIVRD---------ALGRKWQLGTV---QVDY 508

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +P     T+ G+D + H  V +     G+M     V+     G   +W   +AP +  +
Sbjct: 509 VMPERFDLTYIGSDSQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLW---LAPVQAVV 565

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  + +   L   G     D   E+IG +   A+L   P  +++G K  
Sbjct: 566 LPIA---EDVHDYAKSVQQALLGAGIRSELDTRNEKIGKKIREAELAKVPCMIVIGQKEK 622

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              +V ++    G     ++  +        +  
Sbjct: 623 ESGEVSLRRHRIGDEGCFTVTGLTEKLLKEIAAR 656


>gi|149057085|gb|EDM08408.1| threonyl-tRNA synthetase-like 2, isoform CRA_a [Rattus norvegicus]
          Length = 790

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 157/442 (35%), Gaps = 46/442 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A    H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 379 EKFQEEARSRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTE 438

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +
Sbjct: 439 VLSPNMYNSKLWETSGHWQHYSNNMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREM 497

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F +  E  +            ++  
Sbjct: 498 PVRFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCM-VEQIEEEIKGCLHFLQSVYST 556

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 557 FGFSF-QLNLSTRPEHFLGETEIWDEAERQLQNSLTGFGKPWKINPGDG----------- 604

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 605 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 647

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K+  V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C +  
Sbjct: 648 DDKNRPVIIHRAILGSVERMIAILSENYGGK---WPLWLSPRQVMIIPVGP---ACENYA 701

Query: 366 EKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            ++     + G   DV  DD    +  +   A L  +   ++VG K   ++ V ++ R  
Sbjct: 702 LQVSKECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKLNNSVNVRTRDN 760

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            I  ++S+  VI    +   + 
Sbjct: 761 KIHGEISITSVIEKLKNLKKSR 782


>gi|269213497|ref|ZP_06158007.1| proline--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269146261|gb|EEZ72679.1| proline--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 594

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 25  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 85  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 145 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 205 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 255



 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +RA+ G  GG        L   G T    +    +          +D            A
Sbjct: 349 IRAQFGANGGS-------LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDA 401

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D+ N    D  P  + +   ARGIEVGH+F    KY+  M+ +F   +GK   +
Sbjct: 402 AEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIM 461

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +KIYA 
Sbjct: 462 EMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAE 521

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     + + +
Sbjct: 522 LLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQSVPI 581

Query: 432 EEVINYASHRFS 443
            E++   +   +
Sbjct: 582 GEIVARVTDSLN 593


>gi|145219006|ref|YP_001129715.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Prosthecochloris vibrioformis DSM 265]
 gi|189083618|sp|A4SCK4|SYT_PROVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145205170|gb|ABP36213.1| Ser-tRNA(Thr) hydrolase [Chlorobium phaeovibrioides DSM 265]
          Length = 666

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 161/457 (35%), Gaps = 50/457 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L   +  +   G+  WLP G      + + ++EE
Sbjct: 237 KLLKAHLSALEEAKKRDHRKLGTELELFM-LSPEIGSGLPVWLPKGAIIRQELESFLKEE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMT 115
           Q R G + +  P + + DL+  SG Y  Y          +D+       +  P +     
Sbjct: 296 QRRRGYLPVYTPHIGNIDLYKRSGHYPYYSDSQFPPLTYHDEEGKAEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +   P+      
Sbjct: 356 LIYSSKMRSYRDLPVRLAEFGTVYRHEQSGELNGLVRARGFTQDDSHIY-CRPDQLVDEI 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                    +F  LG   +  R           H+ +  +  G T     +   D    +
Sbjct: 415 CNAIDLTRYVFATLGFTEVETRLS--------MHDPLNPSKYGGTADVWEQAEKDVREAA 466

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-- 292
           +    +  I +               D                      +G  +  GT  
Sbjct: 467 DRMKINYFIGVGEASFYGPKIDFIVRDA---------------------LGRKWQLGTVQ 505

Query: 293 -KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y +P     ++ G+DG+ H  + +     G+M     V+     G   +W   +AP +
Sbjct: 506 VDYVMPERFDLSYVGSDGQKHRPIVIHRAPFGSMERFIGVLIEHTAGNFPLW---LAPVQ 562

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             ++ I    +   D   ++   + + G  V  D   E+IG +   A+L   P  VIVG 
Sbjct: 563 AVVLPIA---EDVHDYGSEVRDAMHRAGIRVELDVRNEKIGRKIREAELAKIPFMVIVGQ 619

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           K      V ++    G     S++E+     +  +  
Sbjct: 620 KEKEGGSVSLRRHRIGDEGAFSIQEMTEKLLNEIAAK 656


>gi|258512139|ref|YP_003185573.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478865|gb|ACV59184.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 648

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 163/436 (37%), Gaps = 37/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           ++A    H+ + +   I     +  +G+  WLP G K    +   I + +   G   +  
Sbjct: 238 QEARERDHRRLGKELEIFTLSPEVGQGLPLWLPNGAKIRRIIERYIVDLEESLGYQHVYT 297

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L + +L+  SG ++ Y  +M      +++ ++  P +      +++  + SYR LP  
Sbjct: 298 PHLANVELYKISGHWEHYKDDMYPPMKIDNEELVLRPMNCPHHMMVYKHRLHSYRELPIR 357

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++    R E+     G+ R R   + DA+ F   P+  +  +  +     R++   G+
Sbjct: 358 IAELGTMHRYEMSGALAGLQRVRAMTLNDAHIF-CRPDQIEQEFTGVVRLIQRVYKDFGI 416

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T+ +   D M     S        + L  +  
Sbjct: 417 DDYYHRLSYR--------------DPKNTEKYVQNDEMWELAQSTLRKVMLDLGLEFV-- 460

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +     A      + ++  +L +++ +S   ++    F+   +++L     + G DG+ H
Sbjct: 461 EAEGEAAFYGPKLDVQVRTALGKDETLSTIQLD----FHLPNRFNL----EYVGEDGERH 512

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G M    A +   + G    W   +AP ++ + ++           E++ 
Sbjct: 513 RPVVIHRGVVGTMERFVAFLIEQYKGAFPTW---LAPTQVVVASVA---DEFAGYAEEVA 566

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A+L ++G     D    +IG +   A     P  ++VG++   +  V ++    G    M
Sbjct: 567 AKLRELGIRAEADVSDNKIGYKIRQAQTHKIPYTLVVGAREREEGSVSVRKYQAGDLGAM 626

Query: 430 SLEEVINYASHRFSNN 445
            L++ +          
Sbjct: 627 PLDQFVRQIQDEIERK 642


>gi|220926910|ref|YP_002502212.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|219951517|gb|ACL61909.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 146/442 (33%), Gaps = 43/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G+  W P G      + A +R     
Sbjct: 232 YLHRLEE----AERRDHRRLGREMDLFHFQEEGPGVVFWHPKGWTLFQELIAYMRRRLKG 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E++ P +    LW  SG +D Y + M      +++     P +      IF+  +K
Sbjct: 288 -DYREVNAPQILDKALWETSGHWDWYRENMFVTKTEDERVFAIKPMNCPGHVQIFKHGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F  T +       K+    L
Sbjct: 347 SYRDLPLRLAEFGAVSRYEPSGALHGLMRVRAFTQDDAHVF-CTEDQLAAECLKINDLIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   G   I ++  + P     S      A+   T+V                   + 
Sbjct: 406 STYADFGFDEIVVKLSTRPEKRVGSDALWDHAEEVMTRVL---------------AQIEE 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
            S   I         A      E +       +    R  + G        ++LP    A
Sbjct: 451 QSGGRIRTAINPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLPERFGA 501

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ADG+     M      G+M   A ++     G   +W   +AP ++ +  I +   
Sbjct: 502 FYVDADGQKKTPVMVHRAICGSMERFAGILIEHFAGHFPLW---LAPLQVVVATITSDAD 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +      ++ A     G     D   E+I  +         P+ ++VG +   +  V I+
Sbjct: 559 L---YAREVLAAAEAAGLRAELDLRNEKINYKVREHSHAKVPVMLVVGRREGEEGTVSIR 615

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              +       L++ +      
Sbjct: 616 RLGSQQTRTAPLDQALAELVAE 637


>gi|255065704|ref|ZP_05317559.1| proline--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255050022|gb|EET45486.1| proline--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 570

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 117/253 (46%), Gaps = 10/253 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +RA+ G  GG        L   G T    +    +  +       +D            A
Sbjct: 325 IRAQFGANGGS-------LGPVGFTGKVYADFATEKGVDWVIGANEDDYHYTGFNFGRDA 377

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D+ N    D  P  + +   ARGIEVGH+F    KY+  M+ +F   +GK   +
Sbjct: 378 AEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIM 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        RDA +KIYA 
Sbjct: 438 EMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVRDAADKIYAE 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     + +SL
Sbjct: 498 LLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNQAQTVSL 557

Query: 432 EEVINYASHRFSN 444
            E+         +
Sbjct: 558 NEIAGKVLAALKD 570


>gi|57239615|ref|YP_180751.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579605|ref|YP_197817.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|73919788|sp|Q5H9Z4|SYT_EHRRW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57161694|emb|CAH58624.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418231|emb|CAI27435.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 633

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 156/437 (35%), Gaps = 44/437 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +++   RD      +L L    I   + G   W   G      +   IR++    G
Sbjct: 231 YLNNLIEVEKRDHRKIGKELELF--HIQNEALGQIFWHEKGLIIYRIIENYIRKKLENNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P L S  LW +SG +D + + M  L++ ++K +   P +      IF S I+SY
Sbjct: 289 YIEVKTPYLLSKTLWEQSGHWDKFREHMF-LSEIDNKVVAIKPMNCPCHVQIFNSKIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R E      G+MR R F   DA+ F  T +       K     + +
Sbjct: 348 KDLPLRMAEFGTCHRYESSGALHGLMRVRSFTQDDAHIF-CTEDQIIEEALKFCNLLMEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++    P     S +    A+        + +      P +   +   + 
Sbjct: 407 YEVFGFKDILVKFSDRPEKRAGSDKIWDKAEEALKASVKAANLNYVLNPGDGAFYGPKLE 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                         K    R  + G        + LP  + A +
Sbjct: 467 FTL---------------------------KDAIGREWQCGT---LQMDFVLPERLGAYY 496

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DGK H+  M     +G +     ++   H GK  IW   +AP ++S++ I    +  
Sbjct: 497 TGSDGKKHHPIMLHRAILGTIERFIGILIEHHSGKLPIW---LAPVQLSILTIT---EDA 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  +  K       D   E+I  +         P+  I+G K +    V I++ 
Sbjct: 551 IDYAISLKHKAMKQNIRAEVDITNEKINYKIRSHISKKIPVLWIIGKKEIETESVSIRYL 610

Query: 422 LTGIREDMSLEEVINYA 438
            +  +  MS ++ +   
Sbjct: 611 ESKDQHIMSSDKALKTL 627


>gi|29840712|ref|NP_829818.1| threonyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301681|sp|Q821I3|SYT_CHLCV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29835062|gb|AAP05696.1| threonyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 635

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 156/447 (34%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +    + S G+  + P G    D +    +  
Sbjct: 221 KELKEHLHQLEEAKKRDHRVLGAKLDLFSQ--QECSAGMPFFHPRGMIVWDALIGYWQRL 278

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  ++  P L +  LW  SG + +Y   M  L   +++     P +       +++
Sbjct: 279 HQLAGYKQILTPQLMNRSLWETSGHWSNYKANMYTLK-IDEEDYAIKPMNCPGCMLYYKT 337

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SY+  P    +I    R E+     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 338 RLHSYKEFPLRIAEIGHVHRYEVSGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILN 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL+   +   + P      S E   LA +   +   + +      P +   
Sbjct: 397 LVSELYSTFGLEY-HLELSTRPEKDTIGSDELWELATSALERALINSNTPFIINPGDGAF 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 456 YGPKIDI---------------------------HVKDAIQRTWQCGTI-QLDMFLPERF 487

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A G K   + +     G++     ++     GK  +W   ++P  I LI +   
Sbjct: 488 ELEYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGKFPLW---LSPEHIRLITVADR 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      +++ A   K+G  V  DD  E +  +   A  +     V +G + + ++ + 
Sbjct: 545 HQPH---AKELAAAWQKLGLVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEENTLA 601

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           I+ R   +   M++E  IN      ++
Sbjct: 602 IRTRDNRVLNAMTVETFINTILEEKNS 628


>gi|212219440|ref|YP_002306227.1| prolyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|212013702|gb|ACJ21082.1| prolyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 566

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 166/231 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM  + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMFRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +     
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDESDYAA 233



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D     ++  +   P  + +D+      D  P+ K      RGIEVG +F  G KYS  M
Sbjct: 365 DDFHWINVNWERDVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H 
Sbjct: 425 NATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHK 484

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    VE
Sbjct: 485 SYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVE 544

Query: 418 IKHRLTGIREDMSLEEVIN 436
            K R +   E++SLE V++
Sbjct: 545 YKARKSKEAENVSLENVLS 563


>gi|325132465|gb|EGC55158.1| prolyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 599

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 365 LGPVGFKGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 424

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 425 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 484

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 485 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAELLAAGADVLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 545 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 598


>gi|218768358|ref|YP_002342870.1| prolyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|81857470|sp|Q9JU09|SYP_NEIMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121052366|emb|CAM08698.1| prolyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 570

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFAGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++A F++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMASFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAIAIGEIVARVTASLN 569


>gi|225424719|ref|XP_002265302.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086530|emb|CBI32119.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 160/446 (35%), Gaps = 43/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K ++  ++E    A+   H+L+         H  S G + +LP G +  + +   I+
Sbjct: 277 KRLKEYIARIEE----AKKYDHRLLGVKQELFFCHPLSPGSWFFLPHGGRIYNKLMEFIK 332

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +    G  E+  PT+ +  LW  SG   +Y + M        +     P +      +F
Sbjct: 333 AQYRERGYHEVFSPTMYNMQLWETSGHAANYKENMFVFEVEK-QEFGLKPMNCPGHCLMF 391

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+E      G+ R R F   DA+ F       K     +
Sbjct: 392 EHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRESQIKDEVMGV 450

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  ++  G     ++  + P       E    A+   T+              +  
Sbjct: 451 LEFINYAYNIFGFTY-ELKLSTRPEKYLGDLETWEKAEAALTEALDQSGKPWEINEGDG- 508

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L    + +   ++    F   +++ L 
Sbjct: 509 -------------------AFYGPKIDISVSDALSRKFQCATLQLD----FQLPSRFDLS 545

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +    ++  V +    +G++  + A++   + GK   WP  ++P +  +  +   
Sbjct: 546 YSA--EDEAKRERPVMIHRAILGSVERMFAILLEHYKGK---WPFWLSPRQAIVCPVSEK 600

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q       K+  ++ + G  V  D    +I  +   A L  +   ++VG +  +  +V 
Sbjct: 601 SQ---PYALKVRDQIHQAGYYVDVDTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVS 657

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R  G    MS+E ++++     +
Sbjct: 658 VRVRDKGDHSVMSMENLLSFFKSEIA 683


>gi|296160514|ref|ZP_06843330.1| prolyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295889263|gb|EFG69065.1| prolyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 578

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +   
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYC 224



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + S   D+        +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGSNEVDYH----TTGVNWGRDLPEPVVADIRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M+AT     GK   ++MG YGIG  R++ A IE + D +GIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMNATCLDETGKPRPMEMGCYGIGVTRILGAAIEQNFDDRGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     +  R+A +K+YA L + G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSEAVREAADKLYATLVEAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D K+E + R       + +E+       +  
Sbjct: 532 HRLVIGDRGLKDGKLEYQGRRDAEATLLPVEDAAQTVIGKVR 573


>gi|148261186|ref|YP_001235313.1| threonyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|166223313|sp|A5G0L2|SYT_ACICJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146402867|gb|ABQ31394.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidiphilium
           cryptum JF-5]
          Length = 640

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 145/430 (33%), Gaps = 39/430 (9%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE   H+ + R      + + + G   W   G +    V A +R  Q   G IE+  P 
Sbjct: 238 EAERRDHRKIGRQMDLFHMQEEAVGSVFWHEKGWRLYRTVEAYMRRRQEEFGYIEVRTPQ 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L    LW  SG +D+Y   M      + DK +   P +      IF   ++SYR LP   
Sbjct: 298 LLDRKLWEASGHWDNYRSHMFIAEVEDEDKVLAVKPMNCPCHVQIFNHGLRSYRELPLRM 357

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F  T +       +      R++   G  
Sbjct: 358 AEFGACHRYEPSGALHGIMRVRAFAQDDAHIF-CTEDQIADETVRFVEMLRRVYADFGFP 416

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              ++    P     S E    A+        +        P E                
Sbjct: 417 EFAVKFADRPTPRSGSDEVWDKAEAALRSACETAGVEFTVNPGEG--------------- 461

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A         L D++  + +     ++          Y            G+   
Sbjct: 462 -----AFYGPKLEFVLRDAIGRDWQCGTLQVDFVLPERLDASYVTA-------ESGRARP 509

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+      ++  +  G+  +W   +AP + ++ +I        D  E + AR
Sbjct: 510 VMLHRAIVGSFERFIGILIENCAGRFPLW---LAPTQAAVASIVTD---ANDYAETVAAR 563

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V  D   E+I ++     L   P  ++VG +      V I+   +  ++ M+L
Sbjct: 564 LKEAGLAVATDTRNEKINAKVRDLSLALVPNILVVGRREAEQQTVSIRRLGSDKQDSMTL 623

Query: 432 EEVINYASHR 441
           +E I      
Sbjct: 624 DEAIATLKAE 633


>gi|91785266|ref|YP_560472.1| prolyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123358448|sp|Q13U19|SYP_BURXL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91689220|gb|ABE32420.1| Prolyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 578

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 165/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +   
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYC 224



 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + S   D+        +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGSNEVDYH----TTGVNWGRDLPEPVVADIRNVKKGDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M+AT     GK   ++MG YGIG  R++ A IE + D +GIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMNATCLDETGKPRPMEMGCYGIGVTRILGAAIEQNFDDRGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     +  R+A +K+YA L + G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSEAVREAADKLYATLLEAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + D K+E + R       + +E+       +  
Sbjct: 532 HRLVIGDRGLKDGKLEYQGRRDAEATLLPVEDAAQTVIAKVR 573


>gi|319788986|ref|YP_004150619.1| prolyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317113488|gb|ADU95978.1| prolyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 568

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P  +E+P DAEI SHKL++R G I + + G+Y  LPLG + +  +  +IR+E
Sbjct: 1   MRFSRAFIPTKKESPADAEIPSHKLLVRAGFIRKVASGLYDILPLGARVIRKIEQVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P +  A+LW ESGR+D YGKEM++  DR+++    GPT EE++TD+ R 
Sbjct: 61  MERAGAQEVILPIMHPAELWQESGRWDVYGKEMIKFKDRHERDYALGPTAEEMITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFRDE+RPRFG+MRSREF+MKDAYSF  + E ++  Y  MF +
Sbjct: 121 EVKSYKELPLNLYQIGRKFRDEIRPRFGLMRSREFIMKDAYSFHASDEDAEREYWNMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+   + A++G IGG  SHEF+V+ADTGE+++    +     
Sbjct: 181 YSRIFKRLGLEFKAVEADTGEIGGSFSHEFMVIADTGESKLVYCPECGYAA 231



 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 120/256 (46%), Gaps = 4/256 (1%)

Query: 190 LKSIPMRAESGPIGGDLS-HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
             +  +R  +     + +      L+  G      +   +   +            L ++
Sbjct: 311 FNAKEVRLATDKEIEEFTGQPKGYLSPVGLPLPVYADYSVIPMVNFVAGAGRADYHLKNV 370

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                   A   DV   +  +  P+     V  RGIEVGHIF  GTKYS  M ATF    
Sbjct: 371 NWGRDFSVAEFVDVTEVRGGEPCPKCGAPLVEKRGIEVGHIFKLGTKYSEAMGATFVDEQ 430

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G +  + MG YGIG  RV+AA +E  HD  GIIWP  +APF++ +I +    +   +A E
Sbjct: 431 GNEKPMVMGCYGIGVTRVMAAAVEQGHDENGIIWPVEIAPFEVIVIPVNVKKEEIVEAAE 490

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++Y+ L + G DV  DD   + G +F  ADL+G P QVIVG K  S+  VE+K R +G R
Sbjct: 491 RVYSELMEAGFDVLLDDRNARPGFKFKDADLIGIPYQVIVGKK-ASEGVVELKIRRSGER 549

Query: 427 EDMSLEEVINYASHRF 442
            ++ ++ V+       
Sbjct: 550 LELPVDGVVGKLRELI 565


>gi|206603264|gb|EDZ39744.1| Threonyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 617

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 161/443 (36%), Gaps = 46/443 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L   +E  R      H+ + R  G+     +   G+  WLP G +    +  + +   +
Sbjct: 203 YLRQQEEVQR----RDHRKLGRELGLFRTLDEKGAGLVLWLPKGSQIRRTLEELWKILHD 258

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   DLW++SG +D Y   M R  +    A    P +      IFR  +
Sbjct: 259 RHGYRYVYTPHIARLDLWMQSGHWDYYQDSMFRPMETEGTAYELKPMNCPFHILIFRESV 318

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++   +R E      G+MR R F   DA+ F   PE        +    
Sbjct: 319 QSYRDLPIRLSELGTVYRYERSGTLHGLMRVRGFTQDDAHIF-CKPEDLAGEIRNVLALV 377

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++  R G     +   + P     S E   +A     +            P E   +  
Sbjct: 378 DQMIGRFGFTDRTVYLSTRPEKSVGSDENWEMATGSLRKALEESGIPYEVDPGEGVFYGP 437

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I                    + K  D++    ++S   ++    F    K+      T
Sbjct: 438 KI--------------------DIKFHDAIGRAWQLSTIQVD----FNLPEKF----DLT 469

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++   G+    + +     G++     ++   + G   +W   +AP ++ ++ I      
Sbjct: 470 YRNDSGEPCRPIMIHRALFGSIERFFGILIEHYAGAFPLW---LAPEQVRIMTIA---DR 523

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                + + +RL   G     D   E+IG +   A +   P   +VG + V +++V ++ 
Sbjct: 524 HIPYAQTVLSRLKDRGVRAEGDFRNEKIGFKVREAQMEKIPEMWVVGDREVEETRVSVRS 583

Query: 421 RLTGIREDMSLE-EVINYASHRF 442
           R    ++   LE E+ +     F
Sbjct: 584 REGEKKDLCPLESELEDLFRRSF 606


>gi|218245600|ref|YP_002370971.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|257058646|ref|YP_003136534.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|218166078|gb|ACK64815.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|256588812|gb|ACU99698.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 607

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 165/448 (36%), Gaps = 51/448 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   ++ EQ + G + + 
Sbjct: 195 EEALKRDHRKLGKELGLFI-FSDPVGPGLPLWTPKGTIIRSTLEDFLKREQLKRGYLSVV 253

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG + +Y ++M  +   N +           P +      I++S ++S
Sbjct: 254 TPHIGRVDLFKISGHWQNYKEDMFPMMAENAEEAAQEIGFALKPMNCPFHIQIYKSELRS 313

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F +TP+     +  +    L 
Sbjct: 314 YRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPDQLDAEFLNVVDLILA 372

Query: 184 IFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +F  L LK+   R        D    S E    A     +   + +   F  P E   + 
Sbjct: 373 VFKSLQLKNFKARLSFRDPESDKYIGSDEAWEKAQNAIRRAVQTLEMDYFEAPGEAAFYG 432

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                                 V  R  ++G +      Y+LP   
Sbjct: 433 PKLDF---------------------------IFHDVLEREWQLGTV---QVDYNLPQRF 462

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG     V +     G++  +  ++   + G   +W   ++P +  L+ +   
Sbjct: 463 ELEYVAEDGTRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LSPIQARLLPV--- 516

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D  +++ +++ ++G     D  GE++G     A+    P+  ++G+K V  + + 
Sbjct: 517 SDLQLDYAKEVASKMQQLGIRAEADTSGERLGKMVRNAEKQKIPVMGVIGAKEVESNSLS 576

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R +G    ++ +EVI   +   +N+
Sbjct: 577 IRTRASGELGTIATDEVIKKLAEAITNH 604


>gi|329767326|ref|ZP_08258851.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328836015|gb|EGF85706.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 647

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 170/445 (38%), Gaps = 33/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++ + + +   RD      +L + T    +   G+  WLP G      +   I +++ 
Sbjct: 228 MEQHLVRLQEARERDHRKLGKELGIFT-TSQKVGAGLPLWLPNGATIRRTIERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P + S DL++ SG +D Y ++M    + + + M+  P +      ++++  
Sbjct: 287 ELGYDHVYTPIMGSKDLYITSGHWDHYQEDMFPPMEMDHETMVLRPMNCPHHMMVYKNER 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R R   + DA+ F + P+  K  +       
Sbjct: 347 HSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDAHIF-VRPDQLKDEFKLTVGLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +  LG+K+   R                  D   T+ +   D M         +  D
Sbjct: 406 EEAYKDLGIKNFSYRLSYR--------------DPENTEKYFDDDAMWNNAQQMLKETAD 451

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+ +  +     A      + ++  ++ + + +S   ++    F    ++       
Sbjct: 452 ELGLDYV--EAEGEAAFYGPKLDVQVETAIGKQETLSTIQLD----FLLPERF----ELE 501

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H   +   GI + M  + A +   + G    W   ++P ++ +I +   +  
Sbjct: 502 YIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEYKGDLPTW---LSPNQVRIIPVN--NDY 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  ++I   L K G  V  DD  E++G +   A     P  +++G K V +  V ++ 
Sbjct: 557 HYDYSKEIMQELKKAGVKVAIDDRDEKLGYKIREAASKKIPYTLVIGDKEVENRNVNVRT 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
             +  +++ S  E         +  
Sbjct: 617 FGSHDQKEESFAEFKENILKEINER 641


>gi|281420278|ref|ZP_06251277.1| threonine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405773|gb|EFB36453.1| threonine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 650

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 164/453 (36%), Gaps = 47/453 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L IL+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVILEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTQLRLRLQELLRSL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +    L+V SG Y  YGK+  +       D+  +  P +     +++
Sbjct: 287 LKPYNYQEVICPGIGGKSLYVTSGHYAHYGKDAFQPIQTPEEDEEYMLKPMNCPHHCEVY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F +  +  K  +  +
Sbjct: 347 ARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRSDQVKSEFENV 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F   G ++   +                L D  +T+ +   D +     +   
Sbjct: 406 IDVILKVFKIFGFENYEAQIS--------------LHDPKDTEKYIGSDEIWEESENAIR 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +      L                   E    +    K        +G  +  GT    Y
Sbjct: 452 EACKEKGLE---------------TREEVGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPERFKLEYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  +K+   L K G     DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKFNDYAQKVRQYLDKQGVRALVDDRNEKIGRKIRDNELKRVPYMVIVGEKES 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++  V ++ +  G +  MS+EE     +   + 
Sbjct: 611 AEGLVSMRKQGGGEQATMSMEEFAQRINAEVAE 643


>gi|33598297|ref|NP_885940.1| prolyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|81836505|sp|Q7W481|SYP_BORPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33566855|emb|CAE39070.1| prolyl-tRNA synthetase [Bordetella parapertussis]
          Length = 576

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 121/223 (54%), Positives = 159/223 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RL L+   + A++G IGG  SHEF V+ADTGE  +  
Sbjct: 181 YQRIFQRLSLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIVY 223



 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D     +   +        +D+ N    D  P+ K      RGIEVGH+F+ GT
Sbjct: 363 CGANREDYHYQGANWGRDLPEPELVADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGT 422

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + ATF   +GK   +QMG YGIG  R+V A IE +HD +GIIWP ++AP+++ + 
Sbjct: 423 KYSEALKATFLDDNGKPAVLQMGCYGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVIC 482

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  RD    +Y  L   G DV  DD   + G  FA  +L+G PL+V VG + +
Sbjct: 483 PVGWGKSETVRDTALALYEALRARGVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGL 542

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++  VE++ R       + +++ +     + 
Sbjct: 543 NEGVVELQARREAEAAKVPVDQALAQTLAKL 573


>gi|269467800|gb|EEZ79555.1| prolyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 560

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +   +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V AIIREE
Sbjct: 1   MKTTNLLIPTQKEAPNDAQIISHQLMIRAGLISKLASGLYSYLPMGLRVLKKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P  Q A+LW ESGR++ YG E+LR  DR+++    GPTHEEV+T +   
Sbjct: 61  MNKSGAQEVLMPVAQPAELWQESGRWEQYGPELLRFNDRHNRKFCLGPTHEEVITHLAAQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L     + +++ M  +
Sbjct: 121 YIRSYKQLPMNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLDQNSLQQTFDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF+RLGL   P+ A+SG IGGD S EF VLAD+GE  +  S       
Sbjct: 181 YCNIFNRLGLDYRPVLADSGSIGGDNSVEFHVLADSGEDAICFSDRSDYAA 231



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D    +     W       +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 355 DEWDYHLTGANWQGIEFNEADLRNAVEGDVSPDGKGRLLIKRGIEVGHIFQLGTKYSQAM 414

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
            A   G  GK     MG YGIG  RV+AA IE +HD +GII+P+S+APF++ ++ I    
Sbjct: 415 KANVIGESGKAVTTTMGCYGIGVTRVIAASIEQNHDDRGIIFPESIAPFQVVIVPINYNK 474

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +D  +++Y +    G +V  DD  E+ G  FA ++LLG P ++++      +  VE
Sbjct: 475 STRVKDLADQLYRQCLDAGIEVLLDDRKERAGIMFADSELLGIPHRMVLSDTHADNGNVE 534

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K R    + ++  +EV+++   + 
Sbjct: 535 YKARNNPDKVEVKFDEVLSFIQSKL 559


>gi|332265242|ref|XP_003281637.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           2 [Nomascus leucogenys]
          Length = 713

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 155/441 (35%), Gaps = 44/441 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +++  +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 302 EKSQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 361

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 362 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 420

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 421 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 479

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 480 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQSSLMDFGEPWKMNPGDG----------- 527

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 528 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPVRFNL----TYVSKDG 570

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 571 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPHQVMVIPVGP---ACEKYA 624

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   ++ V ++ R   
Sbjct: 625 LQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKVNNAVNVRTRDNK 684

Query: 425 IREDMSLEEVINYASHRFSNN 445
           I  ++ +   I+   +     
Sbjct: 685 IHGEILVTSAIDKLKNLKKTR 705


>gi|114331243|ref|YP_747465.1| prolyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|123026746|sp|Q0AGN2|SYP_NITEC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114308257|gb|ABI59500.1| prolyl-tRNA synthetase [Nitrosomonas eutropha C91]
          Length = 568

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P +AE+ASH+LMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFLSTLKEAPAEAELASHRLMLRAGLIKRLGSGLYTWMPLGLRILHKIEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +  A+LW ESGR+D +G +ML++ DR+     +GPTHEEV+ DI R 
Sbjct: 61  MNSSGALELLMPAVHPAELWQESGRWDVFGPQMLKIQDRHQHDFCFGPTHEEVIVDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M  +
Sbjct: 121 EIKSYRQLPINFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHADLGSLEQTYQLMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  +   
Sbjct: 181 YSRIFTRIGLKFRAVAADTGAIGGSGSHEFHVLADSGEDAIAFC 224



 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 3/225 (1%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV- 277
           T++   +  ++        + +         E+         D+ N    D  P+ K + 
Sbjct: 340 TEIIADRAVLEMSNFVCGANEEGYHLTQVNFERDLPLPVQVFDIRNVVTGDPSPDGKGML 399

Query: 278 -SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RGIEVGHIF   TKYS  M AT+    G+   ++MG YGIG  R+VAA IE + D +
Sbjct: 400 EICRGIEVGHIFQLRTKYSEKMKATYLDESGQTQILEMGCYGIGVSRIVAAAIEQNCDER 459

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           GII+P ++APF++S+I I  H  +   A  EK+Y      G +V  DD  E+ G  FA  
Sbjct: 460 GIIFPVAIAPFQLSIIPIGYHKNLQIQAEVEKLYRACRAAGIEVLLDDREERPGVMFADQ 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +L+G P ++++G + + D  VE + RL      +SL+EVI     
Sbjct: 520 ELIGIPHRIVIGERNLRDGMVEYQGRLDKTSRLLSLQEVIPVIRE 564


>gi|26326983|dbj|BAC27235.1| unnamed protein product [Mus musculus]
          Length = 722

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 306 LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 365

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 366 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 424

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 425 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 483

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 484 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 536

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   +     F    +++L      
Sbjct: 537 --------------AFYGPKIDIQIKDAIGRYHQCATIQL----YFQLPIRFNLTY--VS 576

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 577 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 630

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 631 EYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 690

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  + ++EE +          
Sbjct: 691 DNKVHGERTVEETVRRLQQLKQTR 714


>gi|189083494|sp|A9KGU5|SYP_COXBN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 167/231 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +     
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDESDYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D     ++  +   P  + +D+      D  P+ K      RGIEVG +F  G KYS  M
Sbjct: 363 DDFHWINVNWERDVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H 
Sbjct: 423 NATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHK 482

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    VE
Sbjct: 483 SYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVE 542

Query: 418 IKHRLTGIREDMSLEEVIN 436
            K R +   E++SLE V++
Sbjct: 543 YKARKSKEAENVSLENVLS 561


>gi|317052052|ref|YP_004113168.1| prolyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316947136|gb|ADU66612.1| prolyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 572

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 150/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FL   +E P DAE+ SH+LMLR G I + + GIYS+LPL  + L  +  IIREE
Sbjct: 1   MRYSQAFLFTAKETPSDAEVISHQLMLRGGYIKKTAAGIYSYLPLAWRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P    A+LW+ESGR+  YG E+LR  DR+ +    GPTHEE +TDI R 
Sbjct: 61  MTREGAEELMMPAALPAELWMESGRWQKYGPELLRFQDRHGRDFCIGPTHEEAITDIVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD+  E S  +Y KM+ +
Sbjct: 121 AVSSYRHLPKNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDVDDEASATTYEKMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG IGG  SHEF+VLA++GE  +          
Sbjct: 181 YSSIFRRCGLSFKAVEADSGQIGGSFSHEFMVLANSGEDGIASCSKCSYAA 231



 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 2/181 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E        ++    RGIEVGH+F  GT YS  M AT+   +GK+  + MG YGIG  R 
Sbjct: 387 EGDCCPRCHSELNILRGIEVGHVFRLGTVYSQSMKATYLDRNGKEQPMVMGCYGIGVGRT 446

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDD 383
            AA IE +HD KGIIWP S+AP+++ +  +    D+  R   + +Y RL    CDV +DD
Sbjct: 447 AAAAIEQNHDDKGIIWPMSIAPYQVVICTVNPSRDEQSRATADSLYERL-AATCDVLYDD 505

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +F  ++L+G PL++ +  K +  S VEI  R +G +    LE +    +    
Sbjct: 506 RDERPGVKFIDSELIGIPLRLTISQKTLEQSSVEITIRKSGEKYLHPLETISEEVARLIQ 565

Query: 444 N 444
            
Sbjct: 566 Q 566


>gi|325957298|ref|YP_004292710.1| threonyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325333863|gb|ADZ07771.1| threonyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327184028|gb|AEA32475.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 644

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 162/442 (36%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      V   I + +   G 
Sbjct: 229 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+SY
Sbjct: 289 QHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + +
Sbjct: 349 RDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQDEFAKILKLIMDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D   T+ + + D M            D + 
Sbjct: 408 YKDFDITDYYFRLSYR--------------DPKNTEKYFANDEMWERSQKMLKGAMDDLG 453

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++      FG         T+ G
Sbjct: 454 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYVG 503

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++H   M   G +G M    A +   + G    W   +AP +  +I +   +    +
Sbjct: 504 QDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPIQAEIIPVN--NDAHGE 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L+K G     D+  E++G +   +     P  +++G + + +  V ++   T
Sbjct: 559 YAEKVRQELAKRGFRAEVDNRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYGT 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 SL++ I        + 
Sbjct: 619 DEEISKSLDDFIKEIDADVKSY 640


>gi|328779973|ref|XP_001122171.2| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Apis mellifera]
          Length = 428

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 113/413 (27%), Positives = 200/413 (48%), Gaps = 38/413 (9%)

Query: 2   RRSKYFLP----ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           + S+ F P    I      +    S++ +L+ G+I Q + G+Y+ LPLG +  + + A++
Sbjct: 11  KLSQLFQPVTATIATTKQTEIRSKSYENLLKYGLIKQVTTGMYAILPLGLRIFNKLTALV 70

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
             E  + GA ++ +P L    LW ++ R ++   E+ ++ DR  +  I  PTHEE +  +
Sbjct: 71  DNEMQKIGAQKLLLPALTPTHLWKKTDRLNNVT-ELFKIQDRAQRQYILSPTHEESICSV 129

Query: 118 FRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
             +  I S + LP   YQI  K+RDE++PRFG +RSREF+MKD Y+FD+    ++ +Y  
Sbjct: 130 MSTIGILSPKMLPLKLYQISNKWRDEIKPRFGFLRSREFMMKDLYTFDINLNNAQETYAL 189

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +Y  IF ++G+  I    + G IG  +SHE+  ++D GE                  
Sbjct: 190 VCNAYENIFKKIGITYIKSIGDPGLIGDSISHEYHYISDIGED----------------- 232

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                      IV    +   + +    ++ +    +N        EVGH F   TKY++
Sbjct: 233 -----------IVCICPSCQYSINKTICKESYCPKCKNAFNEKSAAEVGHTFLLNTKYTI 281

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           P+    K  + +   + MG +G+G  R+   + E     + + WP ++AP+ + LI  KA
Sbjct: 282 PLEVKIK-INNESIPLVMGCFGLGLSRIFTVMTELLSTKEELRWPKNLAPYTVCLIPPKA 340

Query: 357 --HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIV 406
              ++      +++   L+++  D   DD     IG +F  A + GFP  +I+
Sbjct: 341 GSKEENKSQYVKEVMEILNQLNIDTILDDRTNLTIGKRFMHARITGFPYVIII 393


>gi|227513539|ref|ZP_03943588.1| threonine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083412|gb|EEI18724.1| threonine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 658

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 163/438 (37%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           + + RD  +  ++L L    +  +   G+  W+P G      +   I +++   G   + 
Sbjct: 249 EAHERDHRVIGNQLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIVDKEVANGYEHVY 306

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + DL+ +SG ++ Y ++M    D  D + +   P +      I+  HI+SYR LP
Sbjct: 307 TPVLANLDLYKQSGHWEHYREDMFPPMDMGDGEELELRPMNCPSHIQIYNHHIRSYRELP 366

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  +  +    + ++H  
Sbjct: 367 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIQEEFQNILKLMVEVYHDF 425

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   T+ +   D M     S      D + L+ +
Sbjct: 426 DINDYTFRLSYR--------------DPENTEKYFDDDEMWNRAQSMLKGAMDELGLDYV 471

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L   + +S   ++    F    ++       + G DGK
Sbjct: 472 --EAEGEAAFYGPKLDVQTKTALGNEETLSTIQLD----FMLPERF----DLHYVGEDGK 521

Query: 309 DHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H   M   G+ + M    A +   + G    W   +AP ++ +I +        D  ++
Sbjct: 522 QHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTW---LAPHQVKIIPVS--QDKHGDYAKQ 576

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  +L ++      D   E++G     A     P  ++VG + V+   V ++       +
Sbjct: 577 INDQLRRLKIRSSVDTRAEKMGYLIRDAQTHKIPYTLVVGDEEVNGKSVSVRRYGEKETQ 636

Query: 428 DMSLEEVINYASHRFSNN 445
             SL+  ++      ++ 
Sbjct: 637 AESLDTFVDEIQKDIASY 654


>gi|227824508|ref|ZP_03989340.1| prolyl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226905007|gb|EEH90925.1| prolyl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 571

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 108/231 (46%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P +A + SHKLMLR G I + + G+Y++LPL  K++  +  IIREE
Sbjct: 1   MLVSKLYAPTLREVPAEAVLESHKLMLRAGYIRKIAGGLYTYLPLAWKSIKKIERIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   + E+ +P +Q +++W ESGR+D YG EM R+ DR+ +    GPTHEE++T + ++
Sbjct: 61  MDAIDSQEIMMPIVQPSEIWKESGRWDVYGAEMFRVRDRHGREFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP + YQIQ KFRDE RPRFG+MRSREF+MKDAY+FD    G   SY KM+ +
Sbjct: 121 ELHSYRQLPTSLYQIQSKFRDEKRPRFGLMRSREFIMKDAYTFDADEAGLDESYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+ G IGG+ SHEF+ +A +GE  +          
Sbjct: 181 YARIFDRCGLNYRPVEADPGAIGGNGSHEFMGIAASGEAGIVYCDTCDYAA 231



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            +      M+        +  D   +++   +    Y    D+      D  P  K    
Sbjct: 343 TILIDATVMNMHNVCCGANEVDTHYVDAEPCR-DFVYTKVLDIRTAHEGDQCPHCKGHLK 401

Query: 280 --RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVG +F   TKYS  + ATF   +GK+    MGSYGIG  R +AAVIE  HD  G
Sbjct: 402 EARGIEVGQVFKLYTKYSEALHATFLDPEGKEKPFYMGSYGIGVGRTLAAVIEQYHDANG 461

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            I P ++AP+++ ++ +   D+       +IY  L+  G D   DD  E+ G +F  ADL
Sbjct: 462 AIMPKNIAPYEVIVLPVNVKDEESFAKAGEIYQALNAQGIDAILDDRDERAGVKFKDADL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSN 444
           +G+P++V+VG K +    +E+K R TG   D+ L+ + ++      S 
Sbjct: 522 IGYPVRVVVGPKTLQRGAMEVKVRYTGEMCDLPLDGDYVSALKDILSK 569


>gi|325205891|gb|ADZ01344.1| prolyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 570

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFAGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQVMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 569


>gi|212213390|ref|YP_002304326.1| prolyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212011800|gb|ACJ19181.1| prolyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 566

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 167/231 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +     
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDESDYAA 233



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D     ++  +   P  + +D+      D  P+ K      RGIEVG +F  G KYS  M
Sbjct: 365 DDFHWINVNWERDVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRQM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H 
Sbjct: 425 NATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHK 484

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    VE
Sbjct: 485 SYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVE 544

Query: 418 IKHRLTGIREDMSLEEVIN 436
            K R +   E++SLE V++
Sbjct: 545 YKARKSKEAENVSLENVLS 563


>gi|316984142|gb|EFV63120.1| prolyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 599

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 365 LGPVGFAGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 424

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 425 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 484

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 485 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 545 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 598


>gi|296194829|ref|XP_002745122.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic [Callithrix
           jacchus]
          Length = 723

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 152/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIDFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    
Sbjct: 366 KRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RMVYSVFGFSF-KLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGPS---C 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 631 DEYAQKVRQQFHAAKFMADVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E +        + 
Sbjct: 691 RDNKVHGERTVSETVERLQQLKESR 715


>gi|209364247|ref|YP_001425332.2| prolyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|207082180|gb|ABS76694.2| prolyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 566

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 167/231 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +     
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDESDYAA 233



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D     ++  +   P  + +D+      D  P+ K      RGIEVG +F  G KYS  M
Sbjct: 365 DDFHWINVNWERDVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H 
Sbjct: 425 NATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMHK 484

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    VE
Sbjct: 485 SYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVE 544

Query: 418 IKHRLTGIREDMSLEEVIN 436
            K R +   E++SLE V++
Sbjct: 545 YKARKSKEAENVSLENVLS 563


>gi|329768866|ref|ZP_08260294.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328837229|gb|EGF86866.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 647

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 169/445 (37%), Gaps = 33/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L + T    +   G+  WLP G      +   I +++ 
Sbjct: 228 LQQHLHRLQEARERDHRKLGKELGIFT-TSQKVGAGLPLWLPNGATIRRTIERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P + S DL++ SG +D Y ++M    + + + M+  P +      ++++  
Sbjct: 287 ELGYDHVYTPIMGSKDLYITSGHWDHYQEDMFPPMEMDHETMVLRPMNCPHHMMVYKNER 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R R   + DA+ F + P+  K  +       
Sbjct: 347 HSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDAHVF-VRPDQLKDEFKLTVGLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +  LG+K+   R                  D   T+ +   D M         +  D
Sbjct: 406 QEAYKDLGIKNFSYRLSYR--------------DPENTEKYFDDDNMWNNAQQMLKETAD 451

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+ +  +     A      + ++  ++ + + +S   ++    F    ++       
Sbjct: 452 ELGLDYV--EAEGEAAFYGPKLDVQVETAIGKQETLSTIQLD----FLLPERF----ELE 501

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H   +   GI + M  + A +   + G    W   +AP ++ +I +   +  
Sbjct: 502 YIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEYKGDLPTW---LAPNQVRIIPVN--NDY 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  ++I   L K G  V  DD  E++G +   A     P  +++G K V +  V ++ 
Sbjct: 557 HYDYSKEIMQELKKAGVKVTIDDRDEKLGYKIREAANKKIPYTLVIGDKEVENKAVNVRT 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
             +  +++ S  E         +  
Sbjct: 617 FGSHDQKEESFVEFKENILKEINER 641


>gi|50310653|ref|XP_455348.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644484|emb|CAG98056.1| KLLA0F05918p [Kluyveromyces lactis]
          Length = 744

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 162/441 (36%), Gaps = 42/441 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + R       ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 332 AEASMRDHRKIGREQELFYFNEMSPGSCFWLPHGTRIYNTLVDLLRSEYRKRGYDEVITP 391

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F++  +SYR LP+  
Sbjct: 392 NMYNSKLWETSGHWANYKENMFSFEVEK-ETFGLKPMNCPGHCLMFKARERSYRELPWRV 450

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  ++    +F     ++   G +
Sbjct: 451 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTQDQIENEIANIFDFLKYVYGVFGFE 509

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A++                P +                
Sbjct: 510 F-KMELSTRPEKYVGELETWNNAESKLETALKKWGGNWELNPGDG--------------- 553

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-GADGKDH 310
                A      +  + D+L    + +   ++    F    ++ L        G+D  + 
Sbjct: 554 -----AFYGPKIDIMISDALKRWHQCATIQLD----FQLPNRFELEFKTKELEGSDNYER 604

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++     GK   WP  ++P +I ++ +       ++  +++  
Sbjct: 605 PVMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQILVVPVGVK---FQEYAQEVRD 658

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIR 426
           ++ + G     D  G  +  +     +L +    IVG + +++  V I++R      G  
Sbjct: 659 KMVEAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMTEKSVNIRNRDVMDLQGKN 718

Query: 427 EDMSLEEVINYASHRFSNNRP 447
             + ++ VIN  S      R 
Sbjct: 719 ATVQVDAVINQLSKLKEEKRA 739


>gi|241760072|ref|ZP_04758170.1| proline--tRNA ligase [Neisseria flavescens SK114]
 gi|241319526|gb|EER55956.1| proline--tRNA ligase [Neisseria flavescens SK114]
          Length = 595

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 26  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 86  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 146 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQNMYDA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 206 YCRIFTRLGLKFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 256



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D            A      D+ N    D  P  + +   
Sbjct: 369 KVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISPDEQGRLKL 428

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 429 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 488

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +W  ++APF++ ++ +     +  R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 489 VWTKAMAPFEVVIVPMNYKKSEAVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 548

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           LG P ++++G + + +  VE   R     + +++ EV+   
Sbjct: 549 LGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAVSEVVAKV 589


>gi|261392382|emb|CAX49924.1| prolyl-tRNA synthetase (proline--tRNA ligase; ProRS; global RNA
           synthesis factor) [Neisseria meningitidis 8013]
          Length = 570

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFAGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +S VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKESNVEYAERRNNEAQAVAIGEIVARVTASLN 569


>gi|325140439|gb|EGC62960.1| prolyl-tRNA synthetase [Neisseria meningitidis CU385]
          Length = 599

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +RA+ G  GG        L   G T    +    +          +D            A
Sbjct: 354 IRAQFGANGGS-------LGPVGFTGKVYADFATEKDADWVIGANEDGYHYTGFNFGRDA 406

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D+ N    D  P  + +    RGIEVGH+F    KY+  M+  F   +GK   +
Sbjct: 407 AEPEFVDLRNVVEGDESPDGQGRLKLTRGIEVGHVFQLRDKYTHAMNVNFLDNNGKSQIM 466

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +KIYA 
Sbjct: 467 EMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAE 526

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     + +++
Sbjct: 527 LLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAI 586

Query: 432 EEVINYASHRFS 443
            E++   +   +
Sbjct: 587 GEIVARVTASLN 598


>gi|262037473|ref|ZP_06010933.1| proline--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261748508|gb|EEY35887.1| proline--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 576

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 157/224 (70%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK FL   +E P++AEI SH+LMLR  MI Q ++G+YS+LPLG K L  +  I+REE 
Sbjct: 8   RLSKAFLKTYKEAPKEAEIISHQLMLRASMIKQLTRGVYSYLPLGYKVLRKIENIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           NR  A E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TDI R+ 
Sbjct: 68  NRANAQEIHMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFALGPTHEEVVTDIVRNM 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++LPF  YQIQ KFRDE+RPRFG+MR REFLMKDAYSF +  +     Y  M  +Y
Sbjct: 128 VSSYKDLPFNLYQIQTKFRDEMRPRFGLMRGREFLMKDAYSFHIDQKSLDEEYLNMKSAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            R+F R GL    + A+SG IGGD SHEF+VLAD+GE  +  S 
Sbjct: 188 ERVFIRCGLDFRAVEADSGSIGGDSSHEFMVLADSGEDDILYSD 231



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 3/191 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y   +D+   +  D  P+ K      RGIEVGHIF  G KYS  ++AT    +GK   + 
Sbjct: 387 YDFVADIREARAGDGSPDGKGTLKVARGIEVGHIFKLGDKYSKALNATVLDENGKQQIIA 446

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  RV+AA IE +HD  GIIWP ++AP+ + +I     D+      EK+Y  L 
Sbjct: 447 MGCYGIGISRVMAAAIEQNHDEFGIIWPKNIAPYLVDVIIANIKDEAQFSLGEKLYKELC 506

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +   DD  E+ G +F  ADL+G PL+++VG K  ++ KVEIK R TG   ++  EE
Sbjct: 507 DNGIETVLDDRNERAGFKFKDADLIGIPLKIVVG-KGAAEGKVEIKDRRTGESREVKAEE 565

Query: 434 VINYASHRFSN 444
           V ++       
Sbjct: 566 VTDFVRRFIEE 576


>gi|315038857|ref|YP_004032425.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312276990|gb|ADQ59630.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 645

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 162/442 (36%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEIA--SHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      V   I + +   G 
Sbjct: 229 DLKRRAEIKECDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+SY
Sbjct: 289 QHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + +
Sbjct: 349 RDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQDEFAKILKLIMDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D   T+ + + D M            D + 
Sbjct: 408 YKDFDITDYYFRLSYR--------------DPKNTEKYFANDEMWERSQKMLKGAMDDLG 453

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++      FG         T+ G
Sbjct: 454 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYVG 503

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++H   M   G +G M    A +   + G    W   +AP +  +I +   +    +
Sbjct: 504 QDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPIQAEIIPVN--NDAHGE 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L+K G     D+  E++G +   +     P  +++G + + +  V ++   T
Sbjct: 559 YAEKVRQELAKRGFRAEVDNRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYGT 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 SL++ I        + 
Sbjct: 619 DEEISKSLDDFIKEIDADVKSY 640


>gi|148909063|gb|ABR17634.1| unknown [Picea sitchensis]
          Length = 682

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 158/446 (35%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +  + +E  R D      +L L + +  +   G+  W P G     N+    +   
Sbjct: 271 QLKTYQFLKEEAKRRDHRRLGQELDLFS-IQEEAGGGLVFWHPRGAIIRQNIEDFWKRTH 329

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P +  ADLW  SG  + Y + M    D  D+     P +      +++  
Sbjct: 330 IQHGYELLYTPHVDKADLWKISGHLEFYKENMFNQMDIEDELYQLRPMNCPYHILVYKHS 389

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LPF   ++   +R E+     G+ R R F   DA+ F L P   K     +   
Sbjct: 390 LRSYRDLPFKVAELGTVYRYEMSGSLHGLFRVRGFTQDDAHIFCL-PSQIKDEIRGVLDL 448

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  +   K+  +   + P     S      A +        K +             
Sbjct: 449 TEAILSQFDFKNYEINLSTKPEKAVGSDVIWEKATSALKDALEDKGWDYSVDEGGG---- 504

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D+L    + S   ++    F    ++      
Sbjct: 505 ----------------AFYGPKIDLKIEDALGRKWQCSTVQVD----FNLPQRF----DL 540

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ++  K   + +    +G++     ++  ++ G   +W   ++P +  ++ +     
Sbjct: 541 FYIDSNSEKKRPIMIHRAILGSLERFFGILIENYAGDFPLW---LSPVQARILPVT---D 594

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                C+K+ A++ +          GE++      ++    PL  +VG + V    + ++
Sbjct: 595 TQVPYCQKVVAKMKEKDIRAEL-SYGERLSKLIRNSETHKIPLMAVVGPREVESGTLTVR 653

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G    M+++EVI       +N 
Sbjct: 654 TRHGGELGTMTIDEVIEKIKKAAANR 679


>gi|229513024|ref|ZP_04402490.1| prolyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229349917|gb|EEO14871.1| prolyl-tRNA synthetase [Vibrio cholerae TMA 21]
          Length = 600

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P      +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGNGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R +G +E +++  +I++   + 
Sbjct: 546 YKNRRSGEKEAVAMASIIDFIQAKL 570


>gi|325204335|gb|ADY99788.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 570

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ Y KE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYXKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFKGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 569


>gi|121635048|ref|YP_975293.1| prolyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|152112936|sp|A1KUG4|SYP_NEIMF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120866754|emb|CAM10507.1| prolyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325138239|gb|EGC60808.1| prolyl-tRNA synthetase [Neisseria meningitidis ES14902]
          Length = 570

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFKGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 569


>gi|332030887|gb|EGI70523.1| Threonyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 714

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 160/438 (36%), Gaps = 43/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + +       H+ S G   + P G    + +   IR E  + 
Sbjct: 301 LKEWEKFQEEAAKRDHRKIGKEQELYFFHELSPGSCFFQPRGAYIYNTLVDFIRSEYRKR 360

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW  SG +  Y + M    D   +     P +      IF    +S
Sbjct: 361 GFQEVVTPNIFNSKLWQTSGHWQHYAENMFSF-DVEKETFALKPMNCPGHCMIFDVRCRS 419

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP  F    +  R+EL     G++R R F   DA+ F  + +  K   N        
Sbjct: 420 WRELPIRFADFGVLHRNELSGALTGLIRVRRFQQDDAHIF-CSIDQIKDEINGALDFLWH 478

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG     +   + P       +    A+    +   +        P +        
Sbjct: 479 VYSILGFTF-SLCLSTRPEKFLGDIKVWNEAEKALEESLNAFGQPWSLNPEDG------- 530

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 531 -------------AFYGPKIDVTILDALKRPHQTATIQLD----FQLPIRFNL----SYV 569

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K   + +    +G++  + A++  S+ GK   WP  ++P +  ++ + +      
Sbjct: 570 NEAGEKTRPIIIHRAILGSVERMIAILTESYGGK---WPYWISPRQAMVVPVASQ---FD 623

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   ++  +L   G  V  D D  + +  +   A L  F   ++VG K  +   V I+ R
Sbjct: 624 DYAFEVKQKLWDAGVMVEIDIDPSDTLNKKIRNAQLAQFNFILVVGEKERNAGTVNIRTR 683

Query: 422 LTGIREDMSLEEVINYAS 439
              +  +M+++E+I    
Sbjct: 684 DNVVHGEMAVDELITKLK 701


>gi|254669934|emb|CBA04522.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha153]
          Length = 570

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D            A      D+ +    D  P  + +   ARGIEVGH+F    KY+  M
Sbjct: 364 DGYHYTGFNFGRDAAEPEFVDLRDVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           + +F   +GK   ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +    
Sbjct: 424 NVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+A +KIYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE
Sbjct: 484 SDTVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVE 543

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
              R     + +++ E++   +   +
Sbjct: 544 YAERRDNEAQAIAIGEIVARVTASLN 569


>gi|225023763|ref|ZP_03712955.1| hypothetical protein EIKCOROL_00627 [Eikenella corrodens ATCC
           23834]
 gi|224943457|gb|EEG24666.1| hypothetical protein EIKCOROL_00627 [Eikenella corrodens ATCC
           23834]
          Length = 570

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/226 (52%), Positives = 159/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V A++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVIQPADLWKESGRWDFYGDELLRITDRHDNTFCFSPTCEELITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS-KHSYNKMFV 179
            I SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF    E   +  Y  M+ 
Sbjct: 121 EITSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADYESLVREGYQPMYN 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +Y R+F RLGL   P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 AYCRVFDRLGLDYRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSS 226



 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 3/250 (1%)

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A    I          L   G      +   ++    +     +D            +P 
Sbjct: 321 ASPEAIQAKFGAAGGSLGPVGFKGKVYADFAVEKLADTVIGANEDDHHYTGFNFGRDSPE 380

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +D+ N    D  P+ K      RGIEVGH+F    KYS  ++A+F   +GK   ++M
Sbjct: 381 PEFADIRNVIAGDPSPDGKGYLKLARGIEVGHVFQLRDKYSAALNASFLDNNGKSQIMEM 440

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           G YGIG  R+VAA IE ++D +GIIW +++APF+  ++ +     +  R+A +KIYA L+
Sbjct: 441 GCYGIGITRIVAAAIEQNNDERGIIWTNAMAPFQAVIVPMNYKKSEAVREAADKIYAELT 500

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G DV  DD  E+ G   A ++LLG P ++ +G + + + KVE   R +G  E ++  E
Sbjct: 501 AAGVDVLLDDRDERAGVLLADSELLGIPHRIAIGDRGLKEGKVEYTERRSGETELVAAGE 560

Query: 434 VINYASHRFS 443
           +        +
Sbjct: 561 IAAKLKGLLA 570


>gi|254805135|ref|YP_003083356.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668677|emb|CBA06388.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 570

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFAGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTALLN 569


>gi|210633121|ref|ZP_03297688.1| hypothetical protein COLSTE_01601 [Collinsella stercoris DSM 13279]
 gi|210159275|gb|EEA90246.1| hypothetical protein COLSTE_01601 [Collinsella stercoris DSM 13279]
          Length = 569

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E+P +AE+ASH+LMLR G+I + + G+YS+LPL  ++L  +  I+R+E
Sbjct: 1   MKMSKLYAPTLKEDPAEAELASHRLMLRAGLIRKQAAGLYSYLPLAWRSLRKIEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A +W ESGRY++YG E++R+ DR+D+  + GPTHEE +TD+ ++
Sbjct: 61  MDAAGAQELLMPIMVDAQVWRESGRYNAYGPELMRIDDRHDREFVLGPTHEETVTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF+ T E  + +Y++M  +
Sbjct: 121 ELKSYKQLPVNLYQIQDKFRDEMRPRFGLMRGREFIMKDGYSFNATQESLQETYDEMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I  R GLK++P+ A+SG IGGD S EF+ LAD GE  +          
Sbjct: 181 YANICERCGLKALPVVADSGQIGGDTSVEFMALADAGEAALVYCDACGYAA 231



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 2/190 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+      D  P        ARGIEV  +F  GTKYS  M ATF   +G++    MG 
Sbjct: 379 WEDLITVIAGDPCPHCGASLAGARGIEVSQVFQLGTKYSEAMGATFADENGEEKPFLMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YG+G  R +AA +E  HDG GIIWP S+AP+++S++ +    + C + C ++   L   G
Sbjct: 439 YGVGVSRTLAASVEQHHDGHGIIWPVSIAPYEVSIMPLDPTIEECAEVCARLTDELCAAG 498

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD   + G +FA  DL+GFP Q+++G + + +  VE+K R TG RED++++EV  
Sbjct: 499 IEVIVDDRDIRPGVKFADNDLMGFPYQIVLGKRGLKNGTVELKDRATGEREDVAIDEVAA 558

Query: 437 YASHRFSNNR 446
             +    + R
Sbjct: 559 KVADLVISQR 568


>gi|149499809|ref|XP_001513531.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2, partial
           [Ornithorhynchus anatinus]
          Length = 677

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 158/447 (35%), Gaps = 41/447 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  +   ++   +A+   H+ + +       H  S G   +LP G    + +   IREE
Sbjct: 259 SKM-MKTWEKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFLYNTLLDFIREE 317

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M    D   +     P +      +F  
Sbjct: 318 YHKRNFTEVVSPNVYNSKLWETSGHWQHYSENMFSF-DVEKETFALKPMNCPGHCLMFAH 376

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P       +  R+EL     G+ R R F   DA+ F +  E  +        
Sbjct: 377 RPRSWREMPIRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCMM-EQIEEEMKGCLQ 435

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     +   + P       E    A+                 P +    
Sbjct: 436 FLQSVYSVFGFSF-QLNLSTRPENFLGEIETWDQAEKQLQNSLKEFGEPWKLNPGDG--- 491

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    + +   ++    F    +++L   
Sbjct: 492 -----------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 530

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +    +D K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +     
Sbjct: 531 SKE--SDDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP--- 582

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  ++I +   + G     D D    +  +   A L  +   ++VG K   ++ V +
Sbjct: 583 TCEEYAQQIRSEFFEAGFMADVDLDQSSTLNKKIRNAQLAQYNFILVVGEKEKGNNAVNV 642

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++S+   I        + 
Sbjct: 643 RTRDNKIHGEISVNSAIEKLKKLKKSR 669


>gi|308389457|gb|ADO31777.1| prolyl-tRNA synthetase [Neisseria meningitidis alpha710]
 gi|325130423|gb|EGC53187.1| prolyl-tRNA synthetase [Neisseria meningitidis OX99.30304]
 gi|325201951|gb|ADY97405.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240149]
          Length = 570

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D     S      A      D+ N    D  P  + +   
Sbjct: 344 KVYADFATEKGADWVIGANEDGYHYTSFNFGRDAAEPEFVDLRNVVEGDESPDGQGRLKL 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 524 LGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTALLN 569


>gi|73951033|ref|XP_857231.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 4
           [Canis familiaris]
          Length = 798

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 158/445 (35%), Gaps = 43/445 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + +       H  S G   +LP G    + +   IREE +R
Sbjct: 383 MMKTWEKFQEEAKNRDHRKVGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHR 442

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + ++ LW  SG +  Y + M    D         P +      +F    +
Sbjct: 443 RNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAHRPR 501

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R +P       +  R+EL     G+ R R F   DA+ F  T E  +           
Sbjct: 502 SWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQ 560

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 561 SVYSTFGFSF-QLNLSTRPENFLGEVELWDEAEKQLQNSLVEFGKPWKMNPGDG------ 613

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L    T+
Sbjct: 614 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TY 651

Query: 303 KGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   GK  + V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C
Sbjct: 652 RSRSGKIRNPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TC 705

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V ++ 
Sbjct: 706 EKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNVRT 765

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   I  ++S+   I+   +   + 
Sbjct: 766 RDNKIHGEISVTSAIHKLKNLKKSR 790


>gi|284799796|ref|ZP_05984887.2| proline--tRNA ligase [Neisseria subflava NJ9703]
 gi|284796829|gb|EFC52176.1| proline--tRNA ligase [Neisseria subflava NJ9703]
          Length = 595

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 26  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 86  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 146 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 206 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 256



 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D            A      D+ N    D  P  + +   
Sbjct: 369 KVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISPDEQGRLKL 428

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 429 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 488

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +W  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 489 VWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 548

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ EV+       +
Sbjct: 549 LGIPHRIVIGDRALKEGNVEYAERRNNQAQAVAVSEVVAKVLAALN 594


>gi|326492063|dbj|BAJ98256.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326499331|dbj|BAK06156.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 667

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 155/447 (34%), Gaps = 42/447 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREE 60
           + K ++   +E  R D       L L +  I +    G+  W P G      +    ++ 
Sbjct: 256 QLKAYIHFKEEAKRRDHRRLGQDLDLFS--IQEDAGGGLVFWHPKGAIIRHILEDSWKQT 313

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +  ADLW  SG  D Y + M    D  D+     P +      +++ 
Sbjct: 314 HLQRGYDLLYTPHVAKADLWKISGHIDFYKENMYNQMDVEDEPYQLRPMNCPYHILVYKR 373

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP    ++   +R EL     G+ R R F   DA+ F L  +  K     +  
Sbjct: 374 KLQSYRDLPIRVAELGTVYRYELSGALHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLD 432

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I  + G ++  +   + P     S +    A          K +            
Sbjct: 433 LTEEILGQFGFRNYEVNLSTRPEKSVGSDDIWEKATIALKDALDDKGWGYTIDEGGG--- 489

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D+L    + S   ++    F    ++     
Sbjct: 490 -----------------AFYGPKIDLKIEDALGRKWQCSTVQVD----FNLPERF----D 524

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+  +   K   + +    +G++     ++  ++ G   +W   +AP +  ++ +  ++
Sbjct: 525 ITYVDSHTEKKRPIMIHRAILGSLERFFGILIENYAGDFPLW---LAPTQARILPVTNNE 581

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 C ++ + L   G        GE++      A+    PL  +VG K V    + I
Sbjct: 582 ---LQYCNEVASELKSRGIRAEV-CHGERLPKLIRNAETQKVPLMAVVGPKEVEARTLTI 637

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G    M ++  I+      ++ 
Sbjct: 638 RSRHNGEMGTMPVDNFISKIQSAVADK 664


>gi|161870212|ref|YP_001599382.1| prolyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|161595765|gb|ABX73425.1| prolyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 599

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ S
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDS 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D     S      A      D+ N    D  P  + +   
Sbjct: 373 KVYADFATEKGADWVIGANEDGYHYTSFNFGRDAAEPEFVDLRNVVEGDESPDGQGRLKL 432

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 433 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 492

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 493 IWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 552

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 553 LGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 598


>gi|288575624|ref|ZP_05977335.2| proline--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288567367|gb|EFC88927.1| proline--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 581

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 12  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 72  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 132 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 192 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 242



 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 114/253 (45%), Gaps = 10/253 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +RA+ G  GG        L   G      +    +          +D            A
Sbjct: 336 IRAQFGANGGS-------LGPVGFKGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDA 388

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D+ N    D  P  + +   ARGIEVGH+F    KY+  M+ +F   +GK   +
Sbjct: 389 AEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIM 448

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +KIYA 
Sbjct: 449 EMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAE 508

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     + + L
Sbjct: 509 LLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNQAQTVGL 568

Query: 432 EEVINYASHRFSN 444
            E+         +
Sbjct: 569 NEIAGKVLAALKD 581


>gi|269214916|ref|ZP_05987412.2| proline--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269208774|gb|EEZ75229.1| proline--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 625

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 56  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 115

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR+  YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 116 MARAGSVELLMPVVQPAELWQESGRWKFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 175

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 176 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 235

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 236 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 286



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D            A      D+ N    D  P  + +   
Sbjct: 399 KVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQARLKL 458

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 459 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 518

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 519 IWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 578

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 579 LGIPHRIVIGDRALKEGNVEYAERRENEAQAVAIGEIVARVTASLN 624


>gi|194098918|ref|YP_002001983.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|291043544|ref|ZP_06569260.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398861|ref|ZP_06643026.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|193934208|gb|ACF30032.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|291012007|gb|EFE03996.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610275|gb|EFF39385.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 599

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G T    +    +          +D            A      D+ N    D  P
Sbjct: 365 LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 424

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 425 DGQGRLKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 484

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G
Sbjct: 485 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 545 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIVARVTASLN 598


>gi|298368808|ref|ZP_06980126.1| proline--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282811|gb|EFI24298.1| proline--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 569

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTDSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +RA+ G  GG        L   G T    +    +          +D            A
Sbjct: 325 IRAQFGANGGS-------LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDA 377

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D+ N    D  P  + +   ARGIEVGH+F    KY+  M+ +F   +GK   +
Sbjct: 378 AEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIM 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +KIY  
Sbjct: 438 EMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYTE 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     + +  
Sbjct: 498 LLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQTVPT 557

Query: 432 EEVINYASHRFS 443
           +E+         
Sbjct: 558 DEIAAKVLAALK 569


>gi|209694468|ref|YP_002262396.1| prolyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|226731423|sp|B6EHZ8|SYP_ALISL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|208008419|emb|CAQ78577.1| prolyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 571

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEEMGPELLRFTDRHARPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCRAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 102/180 (56%), Gaps = 1/180 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      RGIEVGHIF  GT YS  M+     A+GK+  ++MG YGIG  RV
Sbjct: 392 EGDLSPCGQGTLQLKRGIEVGHIFQLGTAYSEAMNCGVLDANGKNSILEMGCYGIGVSRV 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDD 383
           VA+ IE ++D  GI+WP+++APF ++++ +        ++A EK+YA L+ +G DV +DD
Sbjct: 452 VASAIEQNNDEYGIVWPEALAPFTVAIVPMNMYKSDRVKEAAEKLYAELTAMGIDVLFDD 511

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G  F   +L+G P  V++G + + +   E K+R    +E + +  ++ +   + S
Sbjct: 512 RKERPGVMFKDIELIGIPHTVVIGDRSMDEGNFEYKNRRANSKEVIEIANIVEHIKAQLS 571


>gi|161829880|ref|YP_001596051.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|189083495|sp|A9N9Z2|SYP_COXBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161761747|gb|ABX77389.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 564

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 167/231 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +     
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDESDYAA 231



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D     ++  +   P  + +D+      D  P+ K      RGIEVG +F  G KYS  M
Sbjct: 363 DDFHWINVNWERDVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H 
Sbjct: 423 NATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPMPMAPFFIALVPVNMHK 482

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    VE
Sbjct: 483 SYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVE 542

Query: 418 IKHRLTGIREDMSLEEVIN 436
            K R +   E++SLE V++
Sbjct: 543 YKARKSKEAENVSLENVLS 561


>gi|40063052|gb|AAR37908.1| prolyl-tRNA synthetase [uncultured marine bacterium 560]
          Length = 567

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +P ++E P DA+I SH+LM+R G++ + + G+YS+LP+G + +  V  IIREE
Sbjct: 1   MKSSDLLIPTIKEAPNDAQIISHQLMIRAGLVSKLASGLYSYLPIGLRVIQKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++ A E+ +P  Q A+LW ESGR++ YG E+LR  DR+++    GPTHEEV+T+I + 
Sbjct: 61  MNKSLAQELLMPVAQPAELWQESGRWEEYGPELLRFKDRHERDFCLGPTHEEVITNIAKQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 YLRSYKQLPINFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHIDEASLGETYQVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   + A+SG IGGD SHEF VLAD+GE  +  S       
Sbjct: 181 YCNIFDRLGLEYKVVLADSGAIGGDSSHEFHVLADSGEDAICFSNKSDYAA 231



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 3/184 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGHIF  GTKYS  M+A   G DGK   + MG YGIG
Sbjct: 384 RNVVSGDPSPDGKGKLEIKRGIEVGHIFQLGTKYSDAMNANVIGEDGKAVNMNMGCYGIG 443

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R+VAA IE +HD KGII+P+S+APF++ ++ I        R   +++Y +    G +V
Sbjct: 444 VTRIVAASIEQNHDDKGIIFPESIAPFQLVIVPINYNKSSRVRKLADELYEQFLSQGVEV 503

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D+  E+ G  FA ++LLG P ++++         +E K R    + ++  +  I++  
Sbjct: 504 LLDNRKERPGIMFADSELLGIPHRLVISDTHADSGNIEYKSRNEVDKIEIEFKAAIDFIL 563

Query: 440 HRFS 443
            + +
Sbjct: 564 AKLA 567


>gi|298530062|ref|ZP_07017464.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509436|gb|EFI33340.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 646

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 158/444 (35%), Gaps = 44/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K+   + +   RD      +L L +    +   G+  + P G      +    R+E  R 
Sbjct: 230 KHLTRLEEARKRDHRKLGAQLDLFS-FSEEAGPGMPIFHPKGALIRTILEDFERKEHLRR 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   +LW +SG YD+Y + M      +++     P +      I++S ++S
Sbjct: 289 GYQIVQGPQILRRELWEKSGHYDNYRENMY-FTHIDEQVYGVKPMNCLSHMLIYKSKLRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  ++++    R E      G++R REF   DA+     P+  +     +      
Sbjct: 348 YRDLPLRYFELGRVHRHEKSGVLHGLLRVREFTQDDAHIL-CRPDQLQDEITGVVNFVRD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G + + +   + P     S E    +    T    + D      P +   +   I
Sbjct: 407 VMGLFGFEYV-VEVSTRPEKHIGSSEAWEKSTRALTSALDALDMPYEINPGDGAFYGPKI 465

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
            +                             K    R  +   +      ++LP     T
Sbjct: 466 DIKL---------------------------KDALDRKWQCATV---QCDFTLPERFDLT 495

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+    V +    +GA+     V+   + G    W   +AP +  ++NI      
Sbjct: 496 YTGEDGRKYRPVMLHRVVLGAIERFLGVLIEHYGGAFPTW---LAPVQARIMNIT---DA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                     R  ++G  V  DD  E++G +   A +   P  ++ G + V +S + ++ 
Sbjct: 550 QAGYVHDCADRFRQMGIRVEVDDRNEKLGYKVREAQMEKIPYVLVAGDQEVQESGLNVRL 609

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R       MS++EV +        
Sbjct: 610 RGGKNLGLMSIQEVADQIFQDMDE 633


>gi|52078698|ref|YP_077489.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52784060|ref|YP_089889.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52001909|gb|AAU21851.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346562|gb|AAU39196.1| ThrZ [Bacillus licheniformis ATCC 14580]
          Length = 639

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 168/445 (37%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + Q    D      +L L   M  + + G+  +LP GQ     +  + RE QN
Sbjct: 232 LNEYLYFLEQAAKHDHRQLGKQLDLF--MFSEEAPGMPFYLPKGQIVRKELEKLSRELQN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + +  LW +SG +D Y + M   ++ ++      P +      IF++++
Sbjct: 290 NASYDEVHTPFMMNYRLWEKSGHWDHYQENMY-FSEVDNTKFAIKPMNCPGHMLIFKNNL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F +  +  +    K+F   
Sbjct: 349 YSYRDLPIRLAEYGQVHRHEFSGSLNGLLRVRTFCQDDAHIF-VREDQIESEIKKVFHLI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++  +G +   +   + P                      +    +    S     DD
Sbjct: 408 DQVYRTIGFEY-SVELSTRP-----------------DDSLGNNHLWEVSEGSLKNVLDD 449

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E   A Y    D H +   D+L  + +     ++    F    K+      T
Sbjct: 450 LAIKYQVNEGDGAFYGPKIDFHIK---DALKRSHQCGTIQLD----FQMPEKF----DLT 498

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +    V +     G++     ++     G   +W   +AP ++ +I I     +
Sbjct: 499 YINHNNEKVRPVVIHRAIFGSIDRFFGILIEHFAGVFPVW---LAPIQVQIIPI---SHI 552

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C  I + L + G  V  ++  +++G +   A +   P  ++VG   + ++ V ++ 
Sbjct: 553 HLEYCLGIKSELKQHGIRVQINESNQKLGYKIREAQVQKIPYTLVVGDNEIKENGVNVRK 612

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                ++++S+E        +    
Sbjct: 613 YGEEQQKNVSIESFKKNILQQIKTR 637


>gi|124516423|gb|EAY57931.1| Threonyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 617

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 162/452 (35%), Gaps = 48/452 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAII 57
           +  + +L   +E  R      H+ + R  G+     +   G+  WLP G +    +  + 
Sbjct: 198 KELEEYLRQQEEIQR----RDHRKLGRELGLFRTLDEKGAGLVLWLPRGSQIRRTLEELW 253

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +   +R G   +  P +   DLW++SG +D Y   M R  +    A    P +      I
Sbjct: 254 KILHDRHGYRYVYTPHIARLDLWMQSGHWDYYQDSMFRPMETEGTAYELKPMNCPFHILI 313

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR  ++SYR+LP    ++   +R E      G+MR R F   DA+ F   PE        
Sbjct: 314 FRESVQSYRDLPIRLSELGTVYRYERSGTLHGLMRVRGFTQDDAHIF-YPPEDLAGEIRN 372

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +     ++  R G     +   + P     S E   +A     +            P E 
Sbjct: 373 VLALVDQMIGRFGFTDRTVYLSTRPEKSVGSDENWEMATGSLRRALEESGIPYEVDPGEG 432

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I                    + K  D++    ++S   ++    F    K+  
Sbjct: 433 VFYGPKI--------------------DIKFHDAIGRAWQLSTIQVD----FNLPEKF-- 466

Query: 297 PMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T++   G+    + +     G++     ++   + G   +W   +AP ++ ++ I 
Sbjct: 467 --DLTYRNDSGEPCRPIMIHRALFGSIERFFGILIEHYAGAFPLW---LAPEQVRIMTIA 521

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     + +  RL   G     D   E+IG +   A +   P   +VG + V +++
Sbjct: 522 ---DRHIPYAQTVLNRLKDRGVRAEGDFRNEKIGFKVREAQMAKIPEMWVVGDREVEENR 578

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           V ++ R    ++   LE   +     F  + P
Sbjct: 579 VSVRTREGEKKDLRPLE---SELEDLFRRSGP 607


>gi|149027311|gb|EDL82978.1| threonyl-tRNA synthetase, isoform CRA_b [Rattus norvegicus]
          Length = 433

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 151/440 (34%), Gaps = 40/440 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 17  LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 76

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 77  RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 135

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 136 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 194

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 195 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 247

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 248 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 287

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 288 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 341

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+          V  D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 342 EYAQKVRQEFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 401

Query: 422 LTGIREDMSLEEVINYASHR 441
              +  + ++ E +      
Sbjct: 402 DNKVHGERTVGETVERLQQL 421


>gi|262047409|ref|ZP_06020366.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|260572383|gb|EEX28946.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
          Length = 644

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 161/443 (36%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I + +   G
Sbjct: 228 EDLKRRAEIKERDHRTISRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 288 YQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 348 YRDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQTEFAKILKLIMD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M            D +
Sbjct: 407 VYKDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDL 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 453 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 502

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP ++ +I +        
Sbjct: 503 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQVEIIPVNL--DAHG 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L+K G     D   E++G +   +     P  +++G + + +  V ++   
Sbjct: 558 EYAEKVRQELAKRGFRAEVDTRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYG 617

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T      SL + IN       + 
Sbjct: 618 TDEEISKSLTDFINEIDADVKSY 640


>gi|78485419|ref|YP_391344.1| prolyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|114152273|sp|Q31GQ3|SYP_THICR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78363705|gb|ABB41670.1| prolyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 572

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   L   +E P DA + SH+LMLR G+I   + G+Y+WLPLG + L  V AIIR+E
Sbjct: 1   MKTSSLLLATTRETPADAVVISHQLMLRAGIIRPLAGGLYNWLPLGVRVLRKVEAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  A E+ +P +Q  +LW ESGR ++YG E+LR  DR+ +    GPTHEE++TD+ R 
Sbjct: 61  MNKAQAQELLMPVVQPMELWEESGRAEAYGPELLRFKDRHQREFALGPTHEEIITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +  +  + +Y  M+ +
Sbjct: 121 EIRSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHMDKDSLQKTYEDMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P++A++G IGG+ SHEF VLAD+GE  +  S D     
Sbjct: 181 YNRIFTRLGLDFRPVQADTGSIGGEGSHEFHVLADSGEDDIAFSSDSDYAA 231



 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 3/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           D            A     +D+ N    D  P  K      RGIEVGHIF  G KYS  +
Sbjct: 365 DGFHFTGANWDRDATPTLVADIRNVVKGDPSPCGKGKIEIRRGIEVGHIFQLGNKYSEAL 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT    + +   ++MG YGIG  RVVAA IE ++D KGIIWP+++APF++ ++ ++ H 
Sbjct: 425 NATVLNENSRAQILEMGCYGIGVTRVVAAAIEQNYDDKGIIWPEAIAPFQVCIVPMQMHK 484

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +A   +Y  L+  G +V  DD  E+ G  F   +L+G P ++++G + +   ++E
Sbjct: 485 SPRVEEAVMTLYNELTAKGIEVLLDDRKERPGVMFNDMELIGIPHRIVIGERGLDKGEIE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            KHR     +D+   E + +   + S N
Sbjct: 545 YKHRRDEKSQDIPEAEFMEFLLGKLSGN 572


>gi|24583842|ref|NP_723726.1| Threonyl-tRNA synthetase, isoform C [Drosophila melanogaster]
 gi|28574141|ref|NP_524839.3| Threonyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|7297922|gb|AAF53167.1| Threonyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|22946308|gb|AAN10805.1| Threonyl-tRNA synthetase, isoform C [Drosophila melanogaster]
          Length = 690

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 46/439 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +   I+ E  + 
Sbjct: 277 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKR 336

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW+ SG +  Y + M       +K     P +      IF +  +S
Sbjct: 337 GFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRS 395

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F   PE  K            
Sbjct: 396 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-PEQIKSEMKGCLEFLKY 454

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 455 VYTIFGFSFQLV-LSTRPDNYLGELEQWNDAEKALAESLNEFGMPWKENPGDG------- 506

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 507 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYI 545

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +    +G++  + A++  +  GK   WP  ++P ++ ++ +        
Sbjct: 546 ADDGEKKRPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVMVVPVGP---AYD 599

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +  +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R
Sbjct: 600 QYAQSVRDQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTR 659

Query: 422 LTGIREDMSLEEVINYASH 440
              +  ++S+ E+I     
Sbjct: 660 DNKVHGEVSVAELITKLQK 678


>gi|317164487|gb|ADV08028.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 599

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 260



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G T    +    +          +D            A      D+ N    D  P
Sbjct: 365 LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 424

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 425 DGQGRLKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 484

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G
Sbjct: 485 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 545 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 598


>gi|156552955|ref|XP_001603180.1| PREDICTED: similar to threonyl-tRNA synthetase [Nasonia
           vitripennis]
          Length = 859

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 153/438 (34%), Gaps = 43/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + +       H+ S G   + P G    + +   IR E  + 
Sbjct: 445 LKEWEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAHIYNTLVEFIRGEYKKR 504

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW  SG +  Y + M    D   +     P +      IF    +S
Sbjct: 505 GFQEVVTPNIYNSKLWQTSGHWQHYSENMFSF-DVEKETFALKPMNCPGHCMIFDVRNRS 563

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F  T E  K            
Sbjct: 564 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTSEQIKDEMLGALDFLDH 622

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P            A+   ++   +        P +        
Sbjct: 623 VYSVFGFTF-NLCLSTRPEKFLGEVAVWDAAEKALSESLDAFGKPWTLNPGDG------- 674

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L     + 
Sbjct: 675 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----NYV 713

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K   V +    +G++  + A++  S+ GK   WP  ++P ++ +I +        
Sbjct: 714 NETGEKTRPVIIHRAILGSVERMIAILTESYAGK---WPFWLSPRQVMVIPVGPS---LD 767

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   +   ++   G     D D G+ +  +   A L  F   ++VG K  +   V ++ R
Sbjct: 768 EYATQTRDKIHAAGFMTEVDTDHGDTLNKKIRNAQLDQFNFILVVGEKEKAAGTVNVRTR 827

Query: 422 LTGIREDMSLEEVINYAS 439
              +  ++ ++++I    
Sbjct: 828 DNKVHGEIGVDDLIQKFQ 845


>gi|34496029|ref|NP_900244.1| prolyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|81834766|sp|Q7P0J3|SYP_CHRVO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34101883|gb|AAQ58250.1| prolyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 568

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 158/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DA+I S KLM+R G I + + GIYSW+P+G + +  V  IIREE
Sbjct: 1   MRASQFFISTLKEAPADADITSQKLMIRAGFIRKQAAGIYSWMPMGLRVVRKVETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+S+P +Q A+LW E+GR+D+ G E+LR  DR+++     PT EEV+TDI R 
Sbjct: 61  MNRAGGIEVSLPVVQPAELWQETGRWDAMGAELLRFKDRHERDFALQPTAEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ M+ +
Sbjct: 121 ELRSYRALPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSAEDAGKSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE  +   
Sbjct: 181 YRRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYC 224



 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D                   D+ N    D  P+ +      RGIEVGH+FY GTKYS  M
Sbjct: 363 DDQHYTGANFGRDCAEPEVFDIRNVVEGDPSPDGQGALAIQRGIEVGHVFYLGTKYSAAM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +ATF   DGK    +MG YGIG  R++ A IE ++D KG+IWPDS+APF + +  +    
Sbjct: 423 NATFLDEDGKPKPFEMGCYGIGVTRILGAAIEQNYDDKGMIWPDSIAPFAVVVCPVGYDR 482

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A +K+YA L   G DV  DD GE+ G+ FA  +L+G P +V +G + + + KVE
Sbjct: 483 SEAVKEAADKLYADLQARGVDVMLDDRGERPGAMFADWELIGAPHRVTIGDRGLKEGKVE 542

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            +HR       ++ + ++ +   + +
Sbjct: 543 YQHRRDSEATAVAADAILEHVLSKLA 568


>gi|225851210|ref|YP_002731444.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645886|gb|ACO04072.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 646

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 150/449 (33%), Gaps = 41/449 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K ++ +L+E   RD      +L L   +I +    G+  WLP G    + +    +EE  
Sbjct: 235 KKYMNMLEEAKKRDHRKLGRELELF--IIDEDVGGGLALWLPKGAVIRNEIETAWKEEHI 292

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +    LW  SG  D Y + M       ++     P +     +I++S  
Sbjct: 293 KRGYQLVYTPHVGKEQLWQTSGHVDFYRENMFPEMMIEEEGYFVKPMNCPFHVEIYKSRQ 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    ++   +R E      G+MR R F   DA+      +  +     +    
Sbjct: 353 RSYKELPIKLAELGTVYRYERSGVLHGLMRVRGFTQDDAHII-CREDQVEKEIQDVLHLV 411

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L      G     +   + P           +A     +   S                 
Sbjct: 412 LDTLRTYGFNEFQIFLSTRPEKSVGDDRMWEVATESLRKAIESVGLDYQIDEGGG----- 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D++    + S    +    F    ++       
Sbjct: 467 ---------------AFYGPKIDVKIKDAIGRMWQCSTIQFD----FNLPERF----DMY 503

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D K H    +     G++     V+   + G   +W   ++P +  +I +      
Sbjct: 504 YIGEDNKRHRPYMIHRAIFGSIERFIGVLIEHYAGLLPLW---LSPVQAKIIPVA---DT 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L + G  V  D+  E++  +   A+L   P  +IVG K      V ++ 
Sbjct: 558 HIPYAKEVEKKLKEAGLRVEVDERSERMNRKIRDAELQKIPYMLIVGDKEQQTGSVSVRT 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  G     ++++ I  A          L
Sbjct: 618 KKKGNVGLFTVDQFIQNAKKLIEERSTEL 646


>gi|116514446|ref|YP_813352.1| threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093761|gb|ABJ58914.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126146|gb|ADY85476.1| Threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 643

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 163/442 (36%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 228 DLKRRAEIKERDHRTIGRDLDLFFVDPKAGAGLPYWMPKGATIRRIIERYIVDKEVAAGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M    D  +  M+   P +      I++ HI+SY
Sbjct: 288 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    +  +  + +     + +
Sbjct: 348 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFARTLQIIMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +H   +     R                  D   T  + + D M     S      D + 
Sbjct: 407 YHDFDINDYYFRLSYR--------------DPKNTDKYFANDEMWERSQSMLKAAMDDMG 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 453 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----ELSYIG 502

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG++H   M   G +G M    A +   + G    W   +AP +  +I +        D
Sbjct: 503 ADGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVNL--DAHSD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L   G     D   E++G +   +     P  +++G   ++   V ++   T
Sbjct: 558 YAKKVRDELVAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGT 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +   SL E ++  S   +N 
Sbjct: 618 EEQNSESLAEFMDKLSKDVANY 639


>gi|29653442|ref|NP_819134.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|81839111|sp|Q83F67|SYP_COXBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29540704|gb|AAO89648.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 493]
          Length = 566

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 167/231 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S +     
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSDESDYAA 233



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D     ++  +   P  + +D+      D  P+ K      RGIEVG +F  G KYS  M
Sbjct: 365 DDFHWINVNWERDVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRKM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H 
Sbjct: 425 NATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPMPMAPFFIALVPVNMHK 484

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    VE
Sbjct: 485 SYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIVE 544

Query: 418 IKHRLTGIREDMSLEEVIN 436
            K R +   E++SLE V++
Sbjct: 545 YKARKSKEAENVSLENVLS 563


>gi|149185120|ref|ZP_01863437.1| threonyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831231|gb|EDL49665.1| threonyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 671

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 78/455 (17%), Positives = 144/455 (31%), Gaps = 53/455 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    + + + G   W P G +    + A +R + +  G 
Sbjct: 242 LTRLEEAAKRDHRKLGREMDLF--HLQEEAHGSVFWHPNGYRIWRELEAYMRRKMDGAGY 299

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------------------NDKAMIYGP 108
            E+  P L     W  SG +  Y + M  + D                   +   M   P
Sbjct: 300 REIKTPQLMDVRQWTASGHWGKYAENMFAVPDIVPDVDDSGAASAHPKVADDADWMAIKP 359

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      +F+  I SYR+LP    ++    R+E      G+MR R+F   DA+ F  + 
Sbjct: 360 MNCPAHVLVFKQGITSYRDLPIRLGEMGCCHRNEPHGALHGLMRVRQFTQDDAHIF-CSE 418

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                           ++   G     ++    P     S      A+            
Sbjct: 419 SQVVEEVRAFCKLAESVYKDFGFTF-AIKLALRPEKRLGSDADWDKAEQELRDAVEEAGM 477

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           M+     E    +       +    T                          R  +VG I
Sbjct: 478 MNEEFGWEELPGEGAFYAPKLEWHLTDA----------------------IGRTWQVGTI 515

Query: 288 FYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                     + A++ G DG+ H  V +     G+      ++   + G+  +W   +AP
Sbjct: 516 -QGDRVLPERLDASYVGEDGEKHRPVMLHRAIFGSYERFIGILIEHYAGRMPVW---LAP 571

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +  +  I +      D  ++  A+L   G  V  D   E+I  +         P  ++V
Sbjct: 572 TQAVVATIVSD---ADDYAKEAVAKLEAAGIRVASDLRNEKINYKVREHSHAKVPHLLVV 628

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G++   +  V ++      ++ M LEE I      
Sbjct: 629 GNREAEEGTVAVRTLGQQHQKVMPLEEAIAMLKAE 663


>gi|161344091|ref|YP_400976.2| prolyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|114152269|sp|Q31LT0|SYP_SYNE7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 600

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQETLLPQLQPAELWQESGRWETYTKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 121 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D     
Sbjct: 181 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTEDGRYAA 234



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 1/166 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D  G
Sbjct: 432 SARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDKDG 491

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP ++AP++  ++     D     A EKIYA L+  G +   DD  E+ G +F  ADL
Sbjct: 492 IIWPVAIAPYQAVVVIPNITDTEQVAAAEKIYADLTAAGIETLLDDRDERAGVKFKDADL 551

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P +++ G + + + KVE+  R +     +++  V+       +
Sbjct: 552 IGIPYRIVTG-RSLKEGKVEVVQRASKESSVIAVGSVVETVQDWIA 596


>gi|195952891|ref|YP_002121181.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932503|gb|ACG57203.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 637

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 153/438 (34%), Gaps = 38/438 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L T +  Q   G+  WLP G      V   ++E+        + 
Sbjct: 236 EEAKKRDHRRLGKELELFT-IDEQVGPGLIIWLPKGAILRQVVEDYLKEKHRALNYQFVY 294

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +  + LW  SG    Y + M       +++    P +      I++S I+S++ LP 
Sbjct: 295 TPHVGKSTLWETSGHLSYYKENMFPGMKIEEESYYVKPMNCPFHMAIYKSKIRSHKELPI 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              ++   +R E+     G+MR R F   DA+ F    E  K    +       +    G
Sbjct: 355 KIAELGTVYRYEMSGVLHGLMRVRGFTQDDAHIF-CKEEDVKSVIKETLELAFDVLKDFG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P     + E   ++++   +   + D                       
Sbjct: 414 FYDYQIFISTKPKDAIGTEENWKISESALKESLEALDKTYEIDEGGG------------- 460

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  A      + K+ D++    + S    +    F    ++      T+ G D K 
Sbjct: 461 -------AFYGPKIDIKIKDAIGRFWQCSTIQFD----FNLPERF----DLTYVGEDNKK 505

Query: 310 H-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +    +G++     V+   + G   IW   ++P + ++I I        D  +++
Sbjct: 506 HRPYIIHRALLGSIERFTGVLIEHYAGHLPIW---LSPIQAAIIPIA---DRHLDYAKEV 559

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  L       + DD  E++ ++    +L   P+ ++VG K V +    ++ +    +  
Sbjct: 560 FELLKVQNIRTYIDDRPERMNAKIRDNELQKIPILLVVGDKEVQEKTFSVRSKNEEFQGV 619

Query: 429 MSLEEVINYASHRFSNNR 446
           M + + I        N R
Sbjct: 620 MGIYDFIEKLKTAIQNKR 637


>gi|332664427|ref|YP_004447215.1| threonyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333241|gb|AEE50342.1| threonyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 645

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 171/448 (38%), Gaps = 41/448 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L +L+E   RD      +L L      +   G+  WLP G    D +   +R EQ +
Sbjct: 230 QEHLVMLEEARKRDHRKLGQELELFM-FSERVGAGLPIWLPKGNALRDRLMNFLRVEQEK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   ++ P +   +L+V SG Y  YGK+  +     ++ +  +  P +     +I+   
Sbjct: 289 RGYKLVTTPHIGRKELYVTSGHYAKYGKDSFQPIHTPKDGEEFLLKPMNCPHHCEIYAHR 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP    +    +R E      G+ R R F   DA+ F  T E  K  +  +   
Sbjct: 349 PHSYRDLPMRIAEFGTVYRYEQTGELHGLSRVRGFTQDDAHIF-CTEEQVKGEFLNVLDL 407

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              + +++G K    +                  D    + +   D       +EN   +
Sbjct: 408 TRTVLYKMGFKEFTAQISLR--------------DPNTPEKYLGSDENWR--NAENAIIE 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
               +           A      +  + D++        R  ++G I      Y+LP   
Sbjct: 452 ATREVGLKTTMELGEAAFYGPKLDFMVRDAIG-------RQWQLGTI---QVDYNLPERF 501

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + GAD K H  V +     G+M    +++  +  GK  +W   + P + +L+ I   
Sbjct: 502 ELEYVGADNKTHRPVMIHRAPFGSMERFISILIENTAGKFPLW---LMPEQYALLPI--- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D C++I  +L+      + DD  E IG +    +L   P  +IVG K +  + V 
Sbjct: 556 SEKFVDYCKEIEEKLATHDIRGYVDDRNETIGRKIRDTELKRIPYMLIVGEKEMEATGVA 615

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ +  G +  MSLE  ++      +  
Sbjct: 616 VRRQGEGDKGSMSLEAFVSLFGEALAKE 643


>gi|258592606|emb|CBE68915.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS) [NC10
           bacterium 'Dutch sediment']
          Length = 680

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 147/445 (33%), Gaps = 42/445 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E  R D      +L L +    +   G+  W P G      +  + RE+  + G 
Sbjct: 260 LFLLEEAKRRDHRRLGRELELFSVH-DEIGGGLVLWHPKGALVRKLIEDLWREQHLKNGY 318

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +  A LW  SG  D Y + M    +         P +      +F+S + SYR
Sbjct: 319 DLVYTPHVGRATLWETSGHLDFYQEFMYPRMEMEGNDYYVKPMNCPFHIKLFQSKVHSYR 378

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP  F ++   +R E      G++R R F   DA+ F  TP+       +     L   
Sbjct: 379 ELPVRFAELGTVYRFERAGVLHGLLRVRGFTQDDAHIF-CTPQQMVSEVARAVSFSLAFL 437

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G         + P       E    A     +                         
Sbjct: 438 SSFGFDRYDAYIATRPEKAIGDQELWNDATEALRRAADDA-------------------- 477

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               +      A      + K+ D+L    + +    +    F    ++      T+ G 
Sbjct: 478 GLAYQIDDGGGAFYGPKIDLKVRDALGRAWQCTTVQFD----FNLPERF----DITYVGE 529

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     V+   H G    W   +AP +  L+ +       +  
Sbjct: 530 DNRPHRPFMVHRAILGSLERFFGVLVEHHAGAFPTW---LAPVQARLVPVA---DRFQPY 583

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G     D   E++G +   A++   P  ++VG K  +   V ++ R   
Sbjct: 584 AQQVSEQLRAAGIRTETDVRNEKVGYKIRDAEMQKTPYILVVGEKEATSGAVSVRGRGGR 643

Query: 425 IREDMSLEEVINYASHRFSNNRPVL 449
               M +++            +P L
Sbjct: 644 DMGVMPIDQFAAAIQEEL---KPAL 665


>gi|317402479|gb|EFV83047.1| ProS protein [Achromobacter xylosoxidans C54]
          Length = 576

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 130/283 (45%), Positives = 177/283 (62%), Gaps = 4/283 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKIIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQKSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  + D         N +  
Sbjct: 181 YMRIFGRLGLEFRAVAADTGSIGGTRSHEFQVIADTGEDLLVYNADSDYAA----NIELA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +   L +     T P A  +     K  D          R ++
Sbjct: 237 EAPGLYAERGAPTQPMADVATPGAAKCEDVARLLDLPLERTVK 279



 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D         +        +D+ N    D  P+ K      RGIEVGH+FY G 
Sbjct: 363 CGANREDFHIQGVNWGRDLPEPEQVADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGK 422

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + ATF    GK   ++MG YGIG  R+V A IE +HD +GIIWP ++APF++ + 
Sbjct: 423 KYSEALKATFLDETGKPAVLEMGCYGIGITRIVGAAIEQNHDDRGIIWPRAIAPFEVVIC 482

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  R+   K+Y  L   G DV  DD   + G  FA  +L+G PL+V VG + +
Sbjct: 483 PVGWGKSETVRNTSLKLYESLLARGVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGL 542

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +D  VE++ R       + +E  +     + 
Sbjct: 543 NDGVVELQARRETEAAKIPVESALETVLTKL 573


>gi|126729010|ref|ZP_01744825.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710940|gb|EBA09991.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 660

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 148/456 (32%), Gaps = 60/456 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 235 KKHLNMLEE----AAKRDHRKLGREMDLFHMQEEAPGQVFWHPNGWTIYTTLQEYMRRKQ 290

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----------------MI 105
              G  E++ P +    LW  SG ++ Y   M  +     +                   
Sbjct: 291 RAGGYQEINTPQVVDRKLWEASGHWEKYQHHMFIVEVDESRDGEHDDATAKNKEQTRINA 350

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFD 164
             P +      +F   +KSYR+LP    +     R E      G+MR R F   DA+ F 
Sbjct: 351 LKPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCARYEPSGALHGIMRVRGFTQDDAHIF- 409

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            T +  +    +       I+  LG  +  ++  + P     + E     +    +    
Sbjct: 410 CTEDQIEAECARFIEFLADIYRELGFPTFEIKFATRPEKRVGTEESWDYVENALEEAIRK 469

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                   P +   +   +                         D++    +     ++ 
Sbjct: 470 TGRTYTLEPGDGAFYGPKLDFYLT--------------------DAIGRVWQCGTFQVDP 509

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                 G        A++   +G K     +    +G+      ++   H GK   W   
Sbjct: 510 NLPERLG--------ASYIAPNGDKTRPFMLHRATLGSFERFVGILIEEHAGKLPFW--- 558

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++ + +I +      D  +++   L K G     D   E+I  +     +   P+ 
Sbjct: 559 LAPRQVVVASITS---EADDYVQEVTELLRKAGVRAEADIRNEKINYKVREHSVGKVPVI 615

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + +G + V +  V ++          SL ++++  S
Sbjct: 616 LAIGHREVEERTVTVRRLGEKQTSVTSLTDIVSELS 651


>gi|152976185|ref|YP_001375702.1| prolyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189083487|sp|A7GRE9|SYP_BACCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152024937|gb|ABS22707.1| prolyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 566

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  IIREE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+++F +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E     +   +   +       ++     ++  +        +D+   +  D  P+ K
Sbjct: 338 IAEDVEVIADHAVAAIVNGCCGANEEGFHYVNVNSERDFKVNQYADLRFIQEGDQSPDGK 397

Query: 276 RVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTIRFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +     V R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDVQREVAENIYTSLQEQGYEVLLDDRTERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R T    ++ +E++  Y +    
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEDLHTYIADILK 566


>gi|16331761|ref|NP_442489.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501062|sp|Q55806|SYT_SYNY3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1001722|dbj|BAA10559.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 603

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 164/448 (36%), Gaps = 51/448 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 191 EEALKRDHRKLGKELGLFI-FADPVGPGLPLWTPKGTIIRTILEDFLKQEQIKRGYLPVV 249

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+ +SG +  Y ++M  +   + +        +  P +      I++S ++S
Sbjct: 250 TPHIARVDLFKQSGHWQKYQEDMFPMMAESPEEAAQEMGFVLKPMNCPFHIQIYKSELRS 309

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    +R E     G + R R F + D++ F +TP+     +  +    L 
Sbjct: 310 YRDLPLRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPDQLDEEFLSVVDLILT 368

Query: 184 IFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +F  L LK+   R        D    S E    A     +     +   F  P E   + 
Sbjct: 369 VFKSLQLKNFKARLSFRDPESDKYIGSDEAWEKAQGAIRRAVQELEMDYFEAPGEAAFYG 428

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             +                               +    R  ++G +      Y+LP   
Sbjct: 429 PKLDF---------------------------IFQDALEREWQLGTV---QVDYNLPERF 458

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  ADG +   V +     G++  +  ++   + G   +W   +AP ++ L+ +   
Sbjct: 459 DLEYIAADGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPIQVRLLAV--- 512

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   + I  ++  +G     D  G+++G     A+    P+  ++G+K V  + + 
Sbjct: 513 SDEFLPFAQSIVQQMQSLGLRAEVDTSGDRLGKMIRNAEKQKIPVMAVIGAKEVEANALN 572

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R +G   ++ + EV+       +N+
Sbjct: 573 IRTRASGELGEIPVTEVLEKLQATVTNH 600


>gi|145803|gb|AAA23710.1| RNA synthesis factor (drpA) [Escherichia coli]
          Length = 516

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 155/231 (67%), Gaps = 1/231 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+++P  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKHVPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+GL    ++A++G IGG            GE  V  S       
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGRPLT-NSRCWRRGEDDVVFSDTSDYAA 230



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 3/150 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  + + +  RGIEVGHIF  GTKYS  +
Sbjct: 365 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEAL 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 425 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 484

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQ 387
               ++  EK+Y+ L   G +V  DD  E+
Sbjct: 485 SFRVQELAEKLYSELRAQGIEVLLDDRKER 514


>gi|190406293|gb|EDV09560.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a]
 gi|259147177|emb|CAY80430.1| Ths1p [Saccharomyces cerevisiae EC1118]
 gi|323333154|gb|EGA74554.1| Ths1p [Saccharomyces cerevisiae AWRI796]
 gi|323354584|gb|EGA86420.1| Ths1p [Saccharomyces cerevisiae VL3]
          Length = 734

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 161/439 (36%), Gaps = 41/439 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + +     + ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 323 AEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITP 382

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 383 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKSRERSYRELPWRV 441

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +     +F     I+   G +
Sbjct: 442 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTHDQIESEIENIFNFLQYIYGVFGFE 500

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A++                  +                
Sbjct: 501 F-KMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDG--------------- 544

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L   +  + ++  +  
Sbjct: 545 -----AFYGPKIDIMISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYERP 595

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++     GK   WP  ++P ++ ++ +    Q      E +  +
Sbjct: 596 VMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVKYQG---YAEDVRNK 649

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---- 427
           L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++    
Sbjct: 650 LHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNA 709

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S+EEV+    +     R
Sbjct: 710 TVSVEEVLKQLRNLKDEKR 728


>gi|148244484|ref|YP_001219178.1| prolyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166980170|sp|A5CX68|SYP_VESOH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146326311|dbj|BAF61454.1| prolyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 560

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 116/249 (46%), Positives = 165/249 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K  +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V  IIR+E
Sbjct: 1   MKTTKLLIPTQKEAPNDAKIISHQLMIRAGLISKLALGLYSYLPIGIRVLQKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+T + R 
Sbjct: 61  MNKSGAQEVLMPIVQPAELWKESGRWNKYGAELLRFIDRHQREFCLGPTHEEVITHLARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGV+R REF+MKDAYSF +     + +Y  M+ +
Sbjct: 121 YLRSYKQLPMNFYQIQTKFRDEIRPRFGVIRMREFIMKDAYSFHIDEASLQETYEVMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    + A+SG IGG+ SHEF VLAD+GE  +  S          + T F 
Sbjct: 181 YCNIFNRLGLNYRIVLADSGSIGGNTSHEFHVLADSGEDTICFSDKSDYAANIEKVTFFK 240

Query: 241 DIISLNSIV 249
              +  S +
Sbjct: 241 QEKTCQSTM 249



 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 9/264 (3%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           ++I +  G        E   +G       I   D      + +    DF   +   D+  
Sbjct: 302 IKIHNLFGDFEFSTNNEIKNLGLKKGFIGIKNLDIDLIVDYSASVLCDFVCGANECDYH- 360

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMS 299
                 I   W       +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M 
Sbjct: 361 -----LIGVNWQGIKFIDADLRNAVDGDYSPDGKGKLMIKRGIEVGHIFQLGTKYSSVMK 415

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHD 358
           A   G  GK     MG YGIG  R++AA IE +HD KGII+  ++APF+I ++ I     
Sbjct: 416 ANVIGESGKAVTTTMGCYGIGVTRIIAAFIEQNHDDKGIIFSQAIAPFQIVIVPINYNKS 475

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   +++Y +  K   DV  DD  E +G  FA ++LLG P ++++      +  VE 
Sbjct: 476 TRVKALADRLYQQFIKASIDVLLDDRKEHVGIMFADSELLGIPHRIVISDTHADNGSVEY 535

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           K R    + ++  ++ +++   + 
Sbjct: 536 KARNKTNKIEVKFDDALSFIQTKM 559


>gi|225461914|ref|XP_002265484.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 745

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 159/444 (35%), Gaps = 43/444 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K ++  ++E    A+   H+L+         H  S G + +LP G +  + +   I+
Sbjct: 336 KRLKEYIARIEE----AKKYDHRLLGVKQELFFCHPLSPGSWFFLPHGGRIYNKLMEFIK 391

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +    G  E+  PT+ +  LW  SG   +Y + M        +     P +      +F
Sbjct: 392 AQYRERGYHEVFSPTMYNMQLWETSGHAANYKENMFVFEVEK-QEFGLKPMNCPGHCLMF 450

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+E      G+ R R F   DA+ F       K     +
Sbjct: 451 EHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRESQIKDEVMGV 509

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  ++  G     ++  + P       E    A+   T+              +  
Sbjct: 510 LDFINYAYNIFGFTY-ELKLSTRPEKYLGDLETWEKAEAALTEALNQSGKPWEINEGDG- 567

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L    + +   ++    F   +++ L 
Sbjct: 568 -------------------AFYGPKIDISVSDALNRKFQCATLQLD----FQLPSRFDLS 604

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +    ++  V +    +G++  + A++   + GK   WP  ++P +  +  +   
Sbjct: 605 YSA--EDEAKRERPVMIHRAILGSVERMFAILLEHYKGK---WPFWLSPRQAIVCPVSEK 659

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q       ++  ++ + G  V  D    +I  +   A L  +   ++VG +  +  +V 
Sbjct: 660 SQ---PYALQVRDQIHQAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEANTRQVS 716

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R  G    MS+E +++Y    
Sbjct: 717 VRVRDKGDHSVMSMENLLSYFKSE 740


>gi|87309081|ref|ZP_01091218.1| threonyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87288072|gb|EAQ79969.1| threonyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 668

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 157/453 (34%), Gaps = 55/453 (12%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L  L+E  R D      +L L    I+    +G+  WLP G      +   + E+  +  
Sbjct: 235 LEKLEEAKRRDHRTLGKQLELFA--INPLVGQGLILWLPKGAVVRQQLTDFVSEQLKKHE 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
              +  P +   DL+  SG Y  Y           +D+  +  P +      I+++  +S
Sbjct: 293 YESVFTPNIGKVDLYKTSGHYPYYKDSQFPPIHVSDDEEYLLKPMNCPHHIMIYKNRPRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E      G+ R R F   DA+ F +  E  +  + K       
Sbjct: 353 YRELPVRLSEFGTVYRYEQSGELNGMTRVRGFCQDDAHIFCM-EEQVEEEFRKCIEMTQY 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV--FCSKDFMDFPIPSENTDFDD 241
           + + LGL    +R                + D  E  +   C    +D    +    F  
Sbjct: 412 VLNSLGLTDYRVRLGFRDPDNGKYVGNSKVWDRAEQSLVSVCKNMGIDAVAEAGEAAFYG 471

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP- 297
             +   + +                                 +G  +  GT    Y+LP 
Sbjct: 472 PKADFVVNDC--------------------------------LGREWQLGTVQLDYNLPS 499

Query: 298 ---MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
               +  + GAD + H  V +     G++     V+     G   +W   +AP ++ ++ 
Sbjct: 500 TERFALEYVGADNQMHRPVMIHRAPFGSLERFMGVLIEHFAGAFPLW---LAPEQVRVLV 556

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    Q   +   K+ A L + G  V  D   E+IGS+   A L   P   ++G + +  
Sbjct: 557 V---SQKFEEYARKVEAELKQAGFRVKGDYRPEKIGSKIRDAQLELIPYMFVIGGREMET 613

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             V ++ R+ G    M + E I+      +  +
Sbjct: 614 ESVAVRDRIDGDLGSMKVAEAIDKLKQEVAERK 646


>gi|269101961|ref|ZP_06154658.1| prolyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161859|gb|EEZ40355.1| prolyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 572

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEIISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHARPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAFS 224



 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 121/207 (58%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHHVGINWDRDVALGRVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGTTYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +     ++GK+  ++MG YGIG  RVVA+ IE ++D  GIIWPD++APF++S++ +    
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVASAIEQNNDENGIIWPDAIAPFQVSIVPMNMAK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G DV +DD  E+ G  FA  +L+G P  +++G++ + + ++E
Sbjct: 486 SEEVKEAAEKLYADLTAAGIDVLFDDRKERPGVMFADHELIGIPHTIVIGNRSLENGEME 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R TG +E++++ +++ + + + +N
Sbjct: 546 YKNRRTGTKENVAVTDIVAFVTSKLAN 572


>gi|81169649|gb|ABB57989.1| prolyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 606

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 7   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 67  MDATGAQETLLPQLQPAELWQESGRWETYTKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 126

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 127 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 186

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D     
Sbjct: 187 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTEDGRYAA 240



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 1/166 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D  G
Sbjct: 438 SARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDKDG 497

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP ++AP++  ++     D     A EKIYA L+  G +   DD  E+ G +F  ADL
Sbjct: 498 IIWPVAIAPYQAVVVIPNITDTEQVAAAEKIYADLTAAGIETLLDDRDERAGVKFKDADL 557

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P +++ G + + + KVE+  R +     +++  V+       +
Sbjct: 558 IGIPYRIVTG-RSLKEGKVEVVQRASKESSVIAVGSVVETVQDWIA 602


>gi|15677205|ref|NP_274358.1| prolyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|81857571|sp|Q9JZ14|SYP_NEIMB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7226583|gb|AAF41714.1| prolyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|325134423|gb|EGC57068.1| prolyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325200038|gb|ADY95493.1| prolyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 570

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFAGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 569


>gi|164658475|ref|XP_001730363.1| hypothetical protein MGL_2745 [Malassezia globosa CBS 7966]
 gi|159104258|gb|EDP43149.1| hypothetical protein MGL_2745 [Malassezia globosa CBS 7966]
          Length = 509

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 140/477 (29%), Positives = 215/477 (45%), Gaps = 65/477 (13%)

Query: 2   RRSKYFLPILQENPRDA-----EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R S+ ++P +     DA      + S + +LR G I Q + G Y++LP+G + L  + AI
Sbjct: 24  RLSRLYVPTV---SADALGSLDTLESVRRLLRGGYIRQSASGTYTYLPIGLRMLKKLTAI 80

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           I +E ++  A ++ +P L S  LW ++GR+++ G E+ RL DR    MI  PTHEE +T 
Sbjct: 81  IEDEMHQISASQLELPQLLSPALWHKTGRFEAMGSELFRLKDRRGNDMILAPTHEEEITK 140

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    I S ++LP   +QI  KFRDE RPR G++R++EFLMKD YSFD++ E ++ +Y  
Sbjct: 141 LVGMEIDSAKSLPVRVFQIGRKFRDEPRPRAGLLRTKEFLMKDMYSFDVSVEDARITYED 200

Query: 177 MFVSYLRIFHRLGL-------KSIPMR--AESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  +Y RIF R+         ++  MR  A+SG +GG LSHEF V    GE  +      
Sbjct: 201 VLCAYERIFQRVFCWDQARSSETTWMRATADSGTMGGKLSHEFHVPDPAGEDTLLSCDQC 260

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                                  Q       T+         S         + IEVGH 
Sbjct: 261 SYTSNVECAKSLGRGTKQEEQGHQHGRDETVTNAARAGDRCASCTHGTLREHKAIEVGHT 320

Query: 288 FYFGTKYSLPMSATF--KGADGK---DHYVQMGSYGIGAMRVVAAVIE--------SSHD 334
           F  GT+YS  +      + AD K      +QMG YGIG  RV+ A+ +            
Sbjct: 321 FLLGTRYSEALGYHVVPRHADPKRPERVPLQMGCYGIGITRVLGALAQRAAREFDAWHAA 380

Query: 335 GK---------------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS------ 373
                            G  WP  +APF+  ++          D   ++  +L       
Sbjct: 381 TAQTSSMPLQRRRPQRVGFFWPCEIAPFRALVLPSTPQ---HMDIAMRLCTQLDGGLAVT 437

Query: 374 -KVGC---------DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              G          DV  DD     +GS+   +DL+G+P+ +I+G  +    +VE++
Sbjct: 438 WADGMQELLHVPNEDVALDDRTHQSLGSRLFDSDLMGYPIVLILGKHYDQTGEVEVR 494


>gi|56752145|ref|YP_172846.1| prolyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|81820564|sp|Q5N044|SYP_SYNP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56687104|dbj|BAD80326.1| proline-tRNA ligase [Synechococcus elongatus PCC 6301]
          Length = 600

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQETLLPQLQPAELWQESGRWETYAKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 121 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D     
Sbjct: 181 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTEDGRYAA 234



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 1/166 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D  G
Sbjct: 432 SARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDKDG 491

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP ++AP++  ++     D     A EKIYA L+  G +   DD  E+ G +F  ADL
Sbjct: 492 IIWPVAIAPYQAVVVIPNITDTEQVAAAEKIYADLTAAGIETLLDDRDERAGVKFKDADL 551

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P +++ G + + + KVE+  R +     +++  V+       +
Sbjct: 552 IGIPYRIVTG-RSLKEGKVEVVQRASKESSVIAVGSVVETVQDWIA 596


>gi|323337178|gb|EGA78432.1| Ths1p [Saccharomyces cerevisiae Vin13]
          Length = 734

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 161/439 (36%), Gaps = 41/439 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + +     + ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 323 AEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITP 382

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 383 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKSRERSYRELPWRV 441

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +     +F     I+   G +
Sbjct: 442 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTHDQIESEIENIFNFLQYIYGVFGFE 500

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A++                  +                
Sbjct: 501 F-KMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDG--------------- 544

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L   +  + ++  +  
Sbjct: 545 -----AFYGPKIDIMISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYERP 595

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++     GK   WP  ++P ++ ++ +    Q      E +  +
Sbjct: 596 VMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVKYQG---YAEDVRNK 649

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---- 427
           L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++    
Sbjct: 650 LHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNA 709

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S+EEV+    +     R
Sbjct: 710 TVSVEEVLKQLRNLKDEKR 728


>gi|14318437|ref|NP_116578.1| Ths1p [Saccharomyces cerevisiae S288c]
 gi|730881|sp|P04801|SYTC_YEAST RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|556869|emb|CAA86092.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae]
 gi|285812573|tpg|DAA08472.1| TPA: Ths1p [Saccharomyces cerevisiae S288c]
          Length = 734

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 161/439 (36%), Gaps = 41/439 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + +     + ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 323 AEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITP 382

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 383 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKSRERSYRELPWRV 441

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +     +F     I+   G +
Sbjct: 442 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTHDQIESEIENIFNFLQYIYGVFGFE 500

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A++                  +                
Sbjct: 501 F-KMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDG--------------- 544

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L   +  + ++  +  
Sbjct: 545 -----AFYGPKIDIMISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYERP 595

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++     GK   WP  ++P ++ ++ +    Q      E +  +
Sbjct: 596 VMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVKYQG---YAEDVRNK 649

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---- 427
           L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++    
Sbjct: 650 LHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNA 709

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S+EEV+    +     R
Sbjct: 710 TVSVEEVLKQLRNLKDEKR 728


>gi|256273733|gb|EEU08659.1| Ths1p [Saccharomyces cerevisiae JAY291]
          Length = 734

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 161/439 (36%), Gaps = 41/439 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + +     + ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 323 AEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITP 382

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 383 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKSRERSYRELPWRV 441

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +     +F     I+   G +
Sbjct: 442 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTHDQIESEIENIFNFLQYIYGVFGFE 500

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A++                  +                
Sbjct: 501 F-KMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDG--------------- 544

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L   +  + ++  +  
Sbjct: 545 -----AFYGPKIDIMISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYERP 595

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++     GK   WP  ++P ++ ++ +    Q      E +  +
Sbjct: 596 VMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVKYQG---YAEDVRNK 649

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---- 427
           L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++    
Sbjct: 650 LHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNA 709

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S+EEV+    +     R
Sbjct: 710 TVSVEEVLKQLRNLKDEKR 728


>gi|151943085|gb|EDN61420.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 734

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 161/439 (36%), Gaps = 41/439 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + +     + ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 323 AEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITP 382

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 383 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKSRERSYRELPWRV 441

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +     +F     I+   G +
Sbjct: 442 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTHDQIESEIENIFNFLQYIYGVFGFE 500

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A++                  +                
Sbjct: 501 F-KMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDG--------------- 544

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L   +  + ++  +  
Sbjct: 545 -----AFYGPKIDIMISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYERP 595

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++     GK   WP  ++P ++ ++ +    Q      E +  +
Sbjct: 596 VMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVKYQG---YAEDVRNK 649

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---- 427
           L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++    
Sbjct: 650 LHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNA 709

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S+EEV+    +     R
Sbjct: 710 TVSVEEVLKQLRNLKDEKR 728


>gi|262197045|ref|YP_003268254.1| prolyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262080392|gb|ACY16361.1| prolyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 584

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 112/231 (48%), Positives = 150/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+P L+E+P DA++ SH  M+R G + + + G+Y++LPLG + +  +  I+REE
Sbjct: 1   MRLSWAFIPTLKESPADAQVVSHVYMVRGGYMRRLAAGVYTFLPLGWRVIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P     +LW ESGR+  YG E+LR  DR      +GPTHEEV+ D+ R 
Sbjct: 61  MDAAGAQEVLMPAAIPGELWQESGRWSKYGPELLRFQDRKGADFCFGPTHEEVVVDMVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSYR LP T YQIQ KFRDELRPR G+MR REF+MKDAYSFD++ E + HSY  M+ +
Sbjct: 121 DTKSYRELPLTLYQIQSKFRDELRPRAGLMRGREFIMKDAYSFDVSEEAAMHSYTGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A++G IGG  SHEF VLA++GE  +          
Sbjct: 181 YERIFRRCGLDFRPVEADTGAIGGSRSHEFQVLAESGEDAIVSCDACEYAA 231



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 115/218 (52%), Gaps = 3/218 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFG 291
              +  D       + +          +      D  P     +  + RGIEVGH+FY G
Sbjct: 362 CGANELDAHYTGVDLGRDLTAEPRFLQLRMAVAGDRCPRCDSGRLRAHRGIEVGHVFYLG 421

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           T YS PM  TF    G++  ++MG YGIG  R+ AA IE +HD  GI+WP S+AP+++++
Sbjct: 422 TTYSAPMGCTFLDEAGQETAMEMGCYGIGITRIAAAAIEQNHDEGGIVWPLSIAPYEVAI 481

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + ++  D+    A E +YA+L + G +V  DD  E+ G++F  ADL+G PL+V +G + +
Sbjct: 482 LPLQMKDEDVAAAGETLYAKLKECGIEVLLDDRAERPGAKFKDADLIGIPLRVAIGKRSL 541

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            D KVE+K R  G  E + + + + + +      R  L
Sbjct: 542 DDGKVEVKWRKGGDAELVPVADAVEHVAGLIRAERERL 579


>gi|224475774|ref|YP_002633380.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420381|emb|CAL27195.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 635

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 167/440 (37%), Gaps = 42/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           + F+   ++   +      +L + +    +++ G+  +   GQ     +  ++R+ Q   
Sbjct: 229 QAFIEKYEQV--NHRRLGKELDIFS--FSEYAPGMPFYAHNGQVIRLELQNMLRQLQFEA 284

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P +    LW  SG +D Y   M    + +++     P +      I+++H+ S
Sbjct: 285 DYEEVYTPFIMDETLWKNSGHWDHYQDNMY-FTEVDEQTYALKPMNCPGHMLIYKNHLHS 343

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R EL     G+ R R F   DA+ F +  +  +     +     +
Sbjct: 344 YRDLPIRMAEFGQVHRHELSGSLNGLFRVRTFNQDDAHIF-VRRDQIESEILDVLGLIHK 402

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       +F+     GE ++       DF   S     +   
Sbjct: 403 VYSVFGFDY-SIELSTRP------DDFM-----GEIEL------WDFAEQSLENMLNQHG 444

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++ E+  A Y    D+H +   D+L  + +     ++    F    K+      TF 
Sbjct: 445 FKYTVNEKDGAFYGPKIDIHIK---DALGRSHQCGTVQLD----FQMPEKF----DLTFI 493

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K+  V +     G+      ++     G   +W   +AP ++ +I + A   +  
Sbjct: 494 NQAGEKERPVVIHRAIYGSSDRFIGILLEHFGGNLPLW---LAPVQMEVILVNA--DLHL 548

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           DA + +  RL K G  V  D   E++G +   A L   P  ++VG   V +  V ++ R 
Sbjct: 549 DAVKDLKRRLKKEGFRVELDLSDEKMGYKIRQAHLKKVPYTLVVGDNEVENGTVAVRKRG 608

Query: 423 TGIREDMSLEEVINYASHRF 442
                 +++E+ +       
Sbjct: 609 ESEEHSINVEDFVKQLKEEV 628


>gi|325142550|gb|EGC64950.1| prolyl-tRNA synthetase [Neisseria meningitidis 961-5945]
 gi|325198486|gb|ADY93942.1| prolyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 570

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ S
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D            A      D+ N    D  P  + +   
Sbjct: 344 KVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGRLKL 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 524 LGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 569


>gi|229086371|ref|ZP_04218548.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696983|gb|EEL49791.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 566

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSRLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE  +  S       
Sbjct: 181 YSNIFSRCGLNFRAVIADSGAMGGKDTHEFMALSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ +V  +   +   +       ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEVI-ADHAVAAIVNGCCGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTIRFARGIEVGHVFKLGTRYSEAMNATFLDENGKMKPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY+ L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREVGETIYSSLQEQGYEVLLDDRTERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R T    ++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEELHTYIANILK 566


>gi|166367159|ref|YP_001659432.1| prolyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|189083503|sp|B0JTD7|SYP_MICAN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166089532|dbj|BAG04240.1| proline-tRNA ligase [Microcystis aeruginosa NIES-843]
          Length = 603

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHK ++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQQLFVTLREDPAEAEIPSHKCLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNKAGAQECLLPQLQPAELWQESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+L  E  K +Y  M
Sbjct: 121 ARDLIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNLDEECLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            ++Y  IF R GL    + A+SG IGG  S EF+VLAD GE +V  + D     
Sbjct: 181 DIAYRNIFRRCGLAFRAVEADSGAIGGSASQEFMVLADAGEDEVLFTADEKYAA 234



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 1/175 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     SARGIEVGHIF  G KYS  M+A +    G+   + MG YGIG  R+  A +
Sbjct: 425 HDPNQTLQSARGIEVGHIFQLGYKYSQAMNAFYTNEAGESTPICMGCYGIGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP++  ++     D       E +Y  L++ G +   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYQAIVVIPNLADAEQVKTAESLYNELNQAGIETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F  ADL+G P +++ G K +   KVE+  R +    ++++ EV++Y     S 
Sbjct: 545 VKFKDADLIGIPYRIVTG-KSLKSGKVELVERASKKASEVAINEVVSYLKTAISK 598


>gi|224823461|ref|ZP_03696570.1| prolyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224603916|gb|EEG10090.1| prolyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 571

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DA+I S KLMLR G I + + GIYSW+P+G K+L  V AI+REE
Sbjct: 1   MRASQFFISTLKEAPADADIVSQKLMLRAGFIRKAAAGIYSWMPMGLKSLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A LW E+GR+D+ G+EMLR  DR+++  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAIEVIMPIVQPAGLWQETGRWDTMGEEMLRFKDRHERDFVIQPTSEEVVTDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + + +  SY+ M+ +
Sbjct: 121 DLKSYRALPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSADAAGVSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y +IF R+GL    + A++G IGGD SHEF V+A TGE  +   
Sbjct: 181 YCKIFDRIGLTYRAVAADTGAIGGDRSHEFQVIAATGEDAIIYC 224



 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +      P    +D+ N    D  P+ K      RGIEVGH+FY GTKYS  M
Sbjct: 365 DDQHFTGVNFGRDCPEPIVADIRNVVAGDPSPDGKGVLAIERGIEVGHVFYLGTKYSQAM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +ATF   DGK  + +MG YGIG  R++ A IE + D KGIIWPD++APF + L  +    
Sbjct: 425 NATFLDEDGKPKFFEMGCYGIGVTRILGAAIEQNFDAKGIIWPDAIAPFTVVLCPVGYDR 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               + A +++YA L   G DV  DD GE+ G+ FA  +L+G P +V +G + + + KVE
Sbjct: 485 SAEVKAAADQLYAELVANGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKEGKVE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            +HR       M+++ ++ +   + 
Sbjct: 545 YQHRRDSEATGMAVDAILEHVLVKL 569


>gi|295397484|ref|ZP_06807567.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974284|gb|EFG50028.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 656

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 166/451 (36%), Gaps = 38/451 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           R  K F+   +E   RD      +L +   M++ +   G+  WLP G      +   I +
Sbjct: 238 RDLKEFIKQREEAKERDHRKLGKELDIF--MVNPEVGSGLPFWLPKGATIRRIIERYIID 295

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D + ++  P +      ++
Sbjct: 296 KEVSLGYEHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEQLVLRPMNCPHHMMVY 355

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ I SYR  P    ++ +  R E      G+ R RE  + DA+ F + P+  K  + ++
Sbjct: 356 KNDIHSYREFPVRIAELGMMHRYEKSGALSGLQRVREMTLNDAHIF-VRPDQIKEEFTRV 414

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++    +     R                  D   T  +   D M     +   
Sbjct: 415 IELIKQVYDDFNITDYRFRLSYR--------------DPNNTDKYFDDDEMWEKAQAMLK 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +  D +       +     A      + ++  +L   + +S   ++    F    ++   
Sbjct: 461 EAMDDLG--LEYFEAIGEAAFYGPKLDVQMKTALGNEETMSTVQLD----FLLPERF--- 511

Query: 298 MSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T+ G DG+     V +    +  M    A +   + G    W   +AP +  LI + 
Sbjct: 512 -DLTYVGQDGQDTHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQAKLIPVN 567

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D+   +  E+I  R+   G  V  D+  E++G +   A     P Q++ G   ++++ 
Sbjct: 568 --DEAHGEHVEEIRRRMKAAGMRVEVDNRNEKMGYKIREAQTQKIPYQLVFGDNEIAENT 625

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V ++   +     M  +E +          +
Sbjct: 626 VTVRRYGSKETLSMPFDEFLAQLEQDIKEYK 656


>gi|15605310|ref|NP_220096.1| threonyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789318|ref|YP_328404.1| threonyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237803010|ref|YP_002888204.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804932|ref|YP_002889086.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311401|ref|ZP_05353971.1| threonyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317702|ref|ZP_05358948.1| threonyl-tRNA synthetase [Chlamydia trachomatis 6276s]
 gi|255348963|ref|ZP_05380970.1| threonyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503502|ref|ZP_05381892.1| threonyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|7388284|sp|O84585|SYT_CHLTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123731247|sp|Q3KLB6|SYT_CHLTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6578108|gb|AAC68183.2| Threonyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167848|gb|AAX50856.1| threonyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273232|emb|CAX10145.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274244|emb|CAX11038.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436115|gb|ADH18289.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437044|gb|ADH19214.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/11222]
 gi|296437975|gb|ADH20136.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140477|gb|ADH97235.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 635

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 154/447 (34%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +      S G+  + P G    + +    +  
Sbjct: 221 KELKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QTCSAGMPFFHPRGMVVWNALVDYWKRL 278

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  ++  P L + +LW  SG +++Y + M  L   +++     P +       +++
Sbjct: 279 HQRAGYQQIQTPQLMNRELWEISGHWENYKENMYTLTV-DEEDYAIKPMNCPGCMLYYKT 337

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR  P    +I    R EL     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 338 QLHSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILN 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL+   +   + P  G   S +   LA     +            P E   
Sbjct: 397 LVSELYGTFGLEY-HLELSTRPEQGTIGSDDLWELATKALKRALVKSQKPFIISPGEGAF 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 456 YGPKIDI---------------------------HVKDAINRTWQCGTI-QLDMFLPERF 487

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A G K   + +     G++     ++     G+  +W   ++P  + +I +   
Sbjct: 488 DLKYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHVRIITVADR 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +++    S++G  V  D   E +  +   A  +     + +G K +    + 
Sbjct: 545 HEA---RAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLA 601

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R   +  D+++E+  +       +
Sbjct: 602 VRTRDNRVLNDIAVEQFSHVILEELRS 628


>gi|332978157|gb|EGK14892.1| proline--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 576

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/292 (41%), Positives = 169/292 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LM+R G+I + + G+Y WLP+G K L  V  I+REE
Sbjct: 1   MRASQFLFATLKETPSDADIVSSQLMVRAGLIRKLASGLYVWLPMGLKVLQKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW ESGR++ YG E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQESGRFEDYGPELLRFTDRHNRDFVLGPTHEEVITDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFG+MR+REF MKDAYSF +     + +Y +M+ +
Sbjct: 121 ELRSYKQLPVTFFQIQGKFRDEIRPRFGIMRAREFTMKDAYSFHVDQASLEITYQQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A++G IGG  SHEF VLA +GE  +  S                
Sbjct: 181 YTRIFQRLGLTFRAVLADTGSIGGSASHEFHVLAGSGEDAIAFSDGSDYAANVELAEAVC 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           +        ++            +   F  +P    V    ++  HI   GT
Sbjct: 241 NDERAAPTQDRQDVATPKIQTNEDLAKFLDIPLETTVKTLIVKGHHINEDGT 292



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 8/206 (3%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
           +    +  +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  ++ 
Sbjct: 371 MHTTGMNWERDATITEVVDIRNVVEGDPSPDGKGTLSIKRGIEVGHIFQLGDKYSKALNC 430

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINI 354
           T  G DGK   + MG YGIG  R++AA IE +HD  GIIW       DS+APF I+++ +
Sbjct: 431 TVMGEDGKPVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAKTPNVNDSIAPFDIAIVPM 490

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K+ ++      E +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + +++ 
Sbjct: 491 KSKEETVMQTAEALYQELKAKGLNVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEE 550

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
           K E   R  G ++ +S EEV+   S 
Sbjct: 551 KYEYVDRRDGEKQLLSREEVLAKVSQ 576


>gi|291566398|dbj|BAI88670.1| prolyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 601

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/226 (50%), Positives = 148/226 (65%), Gaps = 3/226 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEESLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLY 226



 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     SARGIEVGHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +
Sbjct: 426 HDPSQTLESARGIEVGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAV 485

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+   +      D       +++Y++L++ G +   DD  E+ G
Sbjct: 486 EQSYDKDGIIWPVAIAPYHAIITVPNVSDNQQMAIAQQLYSQLNQAGVETLLDDRNERAG 545

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S +
Sbjct: 546 VKFKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKISQS 600


>gi|89098602|ref|ZP_01171484.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89086564|gb|EAR65683.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 568

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/225 (50%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+L+LR G I Q++ G+YS+LP+ +K L  + AI+REE
Sbjct: 1   MKQSMTLIPTLREVPADAEVRSHQLLLRAGFIRQNAAGVYSYLPMARKVLQKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ A+LW ESGR+ +YG E++RL DRND+    G THEEV+T + R 
Sbjct: 61  MDDAGASELLMPALQQAELWQESGRWYTYGPELMRLKDRNDREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+++F +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEQRPRFGILRGREFIMKDAYSFHSSQESLDEVYSRLFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S 
Sbjct: 181 YSNIFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSD 225



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 106/183 (57%), Gaps = 1/183 (0%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E         K + A+GIEVGH+F  GT+YS  M+A +   +G+   + MG YGIG  R
Sbjct: 387 QEGDLSPDGNGKILFAKGIEVGHVFKLGTRYSEAMNAVYLDENGRTQPMIMGCYGIGVSR 446

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++AA+ E  +D KG IWP  +APFK+ +I +   D+      E++Y  L   G +V +DD
Sbjct: 447 ILAAIAEQYNDDKGFIWPADLAPFKVHVIAVNMKDEAQAGLGEELYKELRGNGYEVLFDD 506

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +FA ADL+G P+++  G K  S+  VE+K R TG  E++  ++++ + +   +
Sbjct: 507 RPERAGVKFADADLIGLPVRITAGKK-ASEGIVEVKVRSTGEMEEIHKDQLLEHIASILT 565

Query: 444 NNR 446
           + +
Sbjct: 566 SQK 568


>gi|295425303|ref|ZP_06818006.1| threonine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295065079|gb|EFG55984.1| threonine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 659

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 159/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD       L L    +  +   G+  W+P G      V   I + +   G   + 
Sbjct: 250 EIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVY 307

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +  Y  +M    D  D  M+   P +      IF+ HI+SYR+LP
Sbjct: 308 TPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLP 367

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++   
Sbjct: 368 LRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQDEFAKILKLIMDVYKDF 426

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D   TQ + + D M            D + L+ +
Sbjct: 427 DITDYYFRLSYR--------------DPKNTQKYFANDEMWERSQKMLKGAMDDLGLDYV 472

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + +   +L  ++ +S   ++      FG         T+ G DG+
Sbjct: 473 EA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPDRFG--------LTYVGKDGE 522

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H   M   G +G M    A +   + G    W   +AP +  +I +   +    +  EK
Sbjct: 523 EHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPIQAEIIPVN--NDAHGEYAEK 577

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L+K G     D+  E++G +   +     P  +++G + +  + V ++   T    
Sbjct: 578 VRQELAKRGFRAEVDNRNEKLGYKIRESQTQKVPYTLVLGDEEMKSNSVNVRRYGTDEEI 637

Query: 428 DMSLEEVINYASHRFSNN 445
             SL++ IN       + 
Sbjct: 638 SKSLDDFINEIDADVKSY 655


>gi|159030425|emb|CAO91326.1| proS [Microcystis aeruginosa PCC 7806]
          Length = 603

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHK ++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQQLFVTLREDPAEAEIPSHKCLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNKAGAQECLLPQLQPAELWQESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+L  E  K +Y  M
Sbjct: 121 ARDLIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNLDEECLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            ++Y  IF R GL    + A+SG IGG  S EF+VLAD GE +V  + D     
Sbjct: 181 DIAYRNIFRRCGLAFRAVEADSGAIGGSASQEFMVLADAGEDEVLFTADEKYAA 234



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 1/175 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     SARGIEVGHIF  G KYS  M+A +    G+   + MG YGIG  R+  A +
Sbjct: 425 HDPNQTLQSARGIEVGHIFQLGYKYSQAMNAFYTNEAGESTPICMGCYGIGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP++  ++     D       E +Y  L++ G +   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYQAIVVIPNLADAEQVKTAESLYNELNQAGIETLLDDRNERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F  ADL+G P +++ G K +   KVE+  R +    ++++ EV++Y     S 
Sbjct: 545 VKFKDADLIGIPYRIVTG-KSLKSGKVELVERASKKASEVAINEVVSYLKTAISK 598


>gi|187925415|ref|YP_001897057.1| prolyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|226699128|sp|B2SYU8|SYP_BURPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187716609|gb|ACD17833.1| prolyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 578

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEKYGPELLRFKDRRQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +   
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYC 224



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + S   D+        +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGSNEVDYH----TTGVNWGRDLPEPVVADIRNVKKGDPSPDGKGVLDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M AT     GK   ++MG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMGATCLDETGKPRPMEMGCYGIGVTRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +     +  R   +K+YA L + G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSEAVRAEADKLYAALVEAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       + +E+       +  
Sbjct: 532 HRLVIGDRGLKEGKLEYQGRRDAEATLLPVEDAAQTVIGKVR 573


>gi|301629493|ref|XP_002943874.1| PREDICTED: prolyl-tRNA synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 657

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLMLR G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMLRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E ++P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAAECAMPVVQPAELWQETGRFEKMGPELLRIKDRHDRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  +K SY  M  +
Sbjct: 121 ELRSYKQLPRNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPASAKASYQVMAAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +          
Sbjct: 181 YCRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQSHYAA 231



 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGT 292
              +  D         +        +D+ N    D  P+   +    R IEVGH+FY GT
Sbjct: 369 CGANEADYHITGVNWARDLPEPDVVADLRNVVAGDKSPDGAGELCIERAIEVGHVFYLGT 428

Query: 293 KYSLPMSATFKGADGKD 309
           KYS  M ATF G DGK 
Sbjct: 429 KYSKAMGATFLGEDGKP 445


>gi|78042796|ref|YP_360595.1| prolyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|114152179|sp|Q3AB89|SYP_CARHZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77994911|gb|ABB13810.1| prolyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 569

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 125/297 (42%), Positives = 178/297 (59%), Gaps = 4/297 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+ENP +AE+ SHKL+LR G I + + G+Y++LPL Q+ L  +  IIREE
Sbjct: 1   MRLSQYFMPTLRENPAEAEVISHKLLLRAGFIRKSASGVYTYLPLAQRVLKKIMQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P LQ A+LW+E+GR+  YG E+ +L DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDRQGGQELMLPILQPAELWLETGRWHVYGPELFKLKDRHNRDFCLGPTHEEIITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   EG + SY KM+ +
Sbjct: 121 EVRSYKELPLLLYQIQNKYRDEKRPRFGLMRGREFIMKDLYSFDRDEEGLEISYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GLK   + A++G IGG  +HEF+VLA++GE  V    D           + +
Sbjct: 181 YTNVFTRCGLKFRAVEADAGAIGGSTTHEFMVLANSGEAVVVYCPDDNC----GYAANLE 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  +     T          N K  D + E  +V  + I    +F     Y L 
Sbjct: 237 KAETKFTPEVIGTPAEIQKVATPNVKTVDEVAEFLKVEKKQILKSVLFKADDGYVLA 293



 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 103/213 (48%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N     +  +N   +   A   A   +  E           V ARGIEVG IF  
Sbjct: 355 AVTGANETGYHLTGVNPERDFSPAVKYADIRLVEEGEPCPKCGKALVFARGIEVGQIFKL 414

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             KYS  M A +   +G+   + MG YGIG  R +AA +E +HD  GIIWP ++APF++ 
Sbjct: 415 KDKYSRKMGAFYLDENGQQKPIIMGCYGIGVTRTMAAAVEQNHDEDGIIWPAAIAPFEVI 474

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +   D+      E++Y  L   G +V  DD  E+ G +F  ADL+G PL++ VG + 
Sbjct: 475 VVPVSNKDEQQMKMAEEVYNLLLNAGFEVVIDDRDERPGVKFKDADLIGIPLRITVGKRT 534

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           VS+   E+K R T   +    EE+++       
Sbjct: 535 VSEGVYEVKIRRTREEKVFQKEELVDGLRQLLK 567


>gi|160902301|ref|YP_001567882.1| threonyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|189083616|sp|A9BHF0|SYT_PETMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160359945|gb|ABX31559.1| threonyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 640

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 164/445 (36%), Gaps = 47/445 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E  R D      KL L   +  + + G+  +LP G+  L+ + A  R+   + G
Sbjct: 231 YLNMIEEAKRRDHRKLGPKLNLFM-LQSEMAPGMPFFLPNGKIVLNELMAYSRQVHKKYG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + +  LW +SG +D Y + M    ++ D  M   P +      I++++  SY
Sbjct: 290 YVEVETPQIMNIKLWHQSGHWDHYKENMF-FTEKEDMPMAVKPMNCPGHILIYKNNFVSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP   ++     R E      G+ R R F   DA+ F + P   +    K+      I
Sbjct: 349 RDLPIRMFEFGKVHRYERSGVLHGLFRVRAFTQDDAHIFCM-PSQMEEEIIKVIQLTNEI 407

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           F   G K       + P   +G   S E    A     +    +  +D    +      D
Sbjct: 408 FSTFGFKY-EAILSTMPEDHMGDIESWERATDALKKALEKSNMEYRIDEGEGAFYGPKID 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                                      DSL    + +   ++    F    ++       
Sbjct: 467 FNVT-----------------------DSLGRKWQCTTIQLD----FQMPERF----DMV 495

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    D +   V +     G++     ++  +  G+   W   ++P ++S++ +    + 
Sbjct: 496 YADENDAQKRPVMIHRAIFGSLERFFGILIENFAGEFPTW---LSPVQVSILPV---SEK 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K    L + G  V+ +D    +G +     +   P  ++ G K ++   + I+ 
Sbjct: 550 FNEEAKKFSRILEQEGIRVYVNDSDATVGYKIRNEQMKKVPYMIVFGEKEMNSDTINIRT 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R     E++S E  I    +   N 
Sbjct: 610 RKGDTIENVSKERFIEEIKNEIKNR 634


>gi|186477394|ref|YP_001858864.1| prolyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|226699127|sp|B2JHD3|SYP_BURP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|184193853|gb|ACC71818.1| prolyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 578

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 164/224 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIADTGEDDIAYC 224



 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 7/221 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGI 282
            +  DF + +   DF        +      P    +D+ N K  D  P+ K      RGI
Sbjct: 356 ANMSDFVVGTNEVDFH----TTGVNWGRDLPEPVVADIRNVKKDDPSPDGKGVIDICRGI 411

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M+ATF    GK   +QMG YGIG  R++ A IE + D KGIIWP+
Sbjct: 412 EVGHVFQLGTKYSEAMNATFLDESGKPQPMQMGCYGIGITRILGAAIEQNFDDKGIIWPE 471

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ L  +        R+  +K++  L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 472 SIAPFEVVLCPMGYDRSDAVREQADKLHDELTAAGIDVILDDRGERPGVMFADWELIGVP 531

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ++++G + + D K+E + R       + +E        + 
Sbjct: 532 HRLVIGERGLKDGKIEYQGRRDAEATLLPVEAAAQAVIDKI 572


>gi|297697604|ref|XP_002825941.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Pongo abelii]
          Length = 707

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 154/441 (34%), Gaps = 44/441 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 296 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 355

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 356 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 414

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 415 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 473

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 474 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 521

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 522 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 564

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 565 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 618

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   
Sbjct: 619 LQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNK 678

Query: 425 IREDMSLEEVINYASHRFSNN 445
           I  ++ +   I+   +     
Sbjct: 679 IHGEILVTSAIDKLKNLKKTR 699


>gi|313668476|ref|YP_004048760.1| prolyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313005938|emb|CBN87395.1| prolyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 570

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G      +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFAGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWAKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRENEAQAVAIGEIVARVTASLN 569


>gi|169830802|ref|YP_001716784.1| prolyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
 gi|226699139|sp|B1I2J1|SYP_DESAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169637646|gb|ACA59152.1| prolyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
          Length = 566

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/224 (48%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +P L+E P +AE+ SH+L+L+ G I + + G+Y+ LPL  + L  +  IIREE
Sbjct: 1   MRASEYLIPTLREIPAEAEVVSHRLLLKAGFIRKAASGVYTLLPLAHRVLRKIMRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW+ SGR+  YG E+ RL DR+ +    GPTHEE++T++   
Sbjct: 61  MDRQGGQEILLPIMQPAELWLRSGRWHVYGPELFRLKDRHGRDFCLGPTHEEIITELVMG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S++ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G + SY KMF +
Sbjct: 121 DVRSHKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDRDEAGLEVSYRKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y R+F R GL+  P+ A+SGPIGG +SHEF+VLA +GE  V   
Sbjct: 181 YQRVFSRCGLEFRPVEADSGPIGGSVSHEFMVLAGSGEALVVYC 224



 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 108/212 (50%), Gaps = 3/212 (1%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHI 287
           F +              ++      P    +D+   +  D  P+  R    ARGIEVG +
Sbjct: 353 FMVNCITGANRGDAHYRNVNPGRDFPLQVVTDLRLVREEDPCPQCGRPLLAARGIEVGQV 412

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F  GTKYS  M  T+    G +  V MG YGIG  R +AA +E +HD +GIIWP ++APF
Sbjct: 413 FKLGTKYSEVMGLTYLDEHGTERPVVMGCYGIGVTRTLAAAVEQNHDEQGIIWPTAIAPF 472

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            + ++ +   D+V     EK Y  LS+ G +V  DD  E+ G +F  ADL+G+PL+V VG
Sbjct: 473 AVVVVPVNVRDEVQSALAEKAYTVLSEAGVEVLLDDRPERPGVKFKDADLVGYPLRVTVG 532

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            K   D  VE++ R  G    + + E+++   
Sbjct: 533 -KTAVDGLVELRLRKNGDTRLVGIGELVDTVR 563


>gi|22298319|ref|NP_681566.1| prolyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|81844949|sp|Q8DKT0|SYP_THEEB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22294498|dbj|BAC08328.1| proline-tRNA ligase [Thermosynechococcus elongatus BP-1]
          Length = 602

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L++ P +AEI SHKL+LR G I + + GIYS+LPL  + L  V+AI+REE
Sbjct: 1   MRLSQMLFVTLRDEPAEAEIPSHKLLLRAGYIRRIASGIYSYLPLMWRVLQKVSAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR+GA+E  +P LQ A+LW ESGR+D+Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRSGALECLLPQLQPAELWQESGRWDTYTKAEGIMFSLTDRAQRQLGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF       K +Y  M
Sbjct: 121 AKDLIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHADVASLKETYQVM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y RI  R GL    + A+SG IGG  SHEF+VLA  GE +V  + D     
Sbjct: 181 YDTYSRILQRCGLTFRAVEADSGAIGGSGSHEFMVLAAAGEDEVLYTADGQYAA 234



 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
              P     +ARGIE+GHIF  GTKYS  M AT+    G++  + MG YGIG  R+  A 
Sbjct: 424 CHDPTQHLEAARGIEIGHIFQLGTKYSEAMKATYTNEQGEEVPLVMGCYGIGISRLAQAA 483

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E  HD +GI+WP ++AP+++ ++     D     A   +Y +L   G +V  DD  E+ 
Sbjct: 484 VEQHHDAQGIVWPLAIAPYQVIIVVPNIGDAQQMQAATDLYEQLQAAGIEVLLDDRDERA 543

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F  ADL+G P +++ G + +++ +VE+  R TG +  + L EV+ Y     + 
Sbjct: 544 GVKFKDADLIGIPYRLVTG-RAIANGEVELIIRATGAKSTLPLTEVVRYLQKEIAQ 598


>gi|240013893|ref|ZP_04720806.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240016334|ref|ZP_04722874.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
 gi|240121462|ref|ZP_04734424.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
 gi|260440251|ref|ZP_05794067.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 570

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G T    +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIVARVTASLN 569


>gi|297748711|gb|ADI51257.1| Threonyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749591|gb|ADI52269.1| Threonyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 660

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 154/447 (34%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +      S G+  + P G    + +    +  
Sbjct: 246 KELKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QTCSAGMPFFHPRGMVVWNALVDYWKRL 303

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  ++  P L + +LW  SG +++Y + M  L   +++     P +       +++
Sbjct: 304 HQRAGYQQIQTPQLMNRELWEISGHWENYKENMYTLTV-DEEDYAIKPMNCPGCMLYYKT 362

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR  P    +I    R EL     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 363 QLHSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILN 421

Query: 180 SYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL+   +   + P  G   S +   LA     +            P E   
Sbjct: 422 LVSELYGTFGLEY-HLELSTRPEQGTIGSDDLWELATKALKRALVKSQKPFIISPGEGAF 480

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 481 YGPKIDI---------------------------HVKDAINRTWQCGTI-QLDMFLPERF 512

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A G K   + +     G++     ++     G+  +W   ++P  + +I +   
Sbjct: 513 DLKYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHVRIITVADR 569

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +++    S++G  V  D   E +  +   A  +     + +G K +    + 
Sbjct: 570 HEA---RAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLA 626

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R   +  D+++E+  +       +
Sbjct: 627 VRTRDNRVLNDIAVEQFSHVILEELRS 653


>gi|332265240|ref|XP_003281636.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           1 [Nomascus leucogenys]
          Length = 793

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 155/441 (35%), Gaps = 44/441 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +++  +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 382 EKSQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 441

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 442 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 500

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 501 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 559

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 560 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQSSLMDFGEPWKMNPGDG----------- 607

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 608 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPVRFNL----TYVSKDG 650

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 651 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPHQVMVIPVGP---ACEKYA 704

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   ++ V ++ R   
Sbjct: 705 LQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKVNNAVNVRTRDNK 764

Query: 425 IREDMSLEEVINYASHRFSNN 445
           I  ++ +   I+   +     
Sbjct: 765 IHGEILVTSAIDKLKNLKKTR 785


>gi|297581262|ref|ZP_06943186.1| prolyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297534578|gb|EFH73415.1| prolyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 571

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +E +++  +I++   + +
Sbjct: 546 YKNRRSGEKEAVAMASIIDFIQTKLA 571


>gi|33286920|gb|AAH55371.1| Threonyl-tRNA synthetase [Mus musculus]
          Length = 722

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   ++   R       H+ S G   +LP G    + +   IR E  +
Sbjct: 306 LLKEWEKFQEEAKNRDYRKTGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 365

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 366 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 424

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 425 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 483

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 484 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 536

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 537 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 576

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 577 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 630

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 631 EYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 690

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  + ++EE +          
Sbjct: 691 DNKVHGERTVEETVRRLQQLKQTR 714


>gi|53803705|ref|YP_114445.1| prolyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|81823621|sp|Q606K3|SYP_METCA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53757466|gb|AAU91757.1| prolyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 583

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G+I + + G+Y+WLPLG K L  V  ++REE
Sbjct: 1   MRTSQFPLNTLKEIPSDAEIVSHQLMLRAGLIRKLAAGLYTWLPLGLKVLRRVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR++ YG E+ RL DR+D+A   GPTHEE++TD+ R+
Sbjct: 61  MDRAGALEVLMPVVQPAELWQESGRWEQYGPELARLHDRHDRAFCLGPTHEEIITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E    +Y+ M+V+
Sbjct: 121 ELKSYRQLPVNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLDQESLAQTYDAMYVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL+  P+ A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 181 YSNIFSRLGLRFRPVLADTGAIGGSHSHEFHVLADSGEDAIAFS 224



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 3/213 (1%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFY 289
           +   N        +N   +          D+ N    D  P+       ARGIEVGHIF 
Sbjct: 367 VCGANEAGYHFSGVNWERDLPLPQDEYLCDLRNVVEGDPSPDGLGTLRIARGIEVGHIFQ 426

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  ++AT    +G+   + MG YGIG  RVVAA IE +HD +GI+WP+++APF++
Sbjct: 427 LGTKYSAALNATVLNEEGRSQVMLMGCYGIGVSRVVAAAIEQNHDERGIVWPEALAPFQV 486

Query: 350 SLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +L  I        R   E++YA LS  G +V +DD   + G  FA  +L+G P ++++  
Sbjct: 487 ALCPINMQTSARVRTTAERLYAELSAAGFEVLYDDRKVRPGVMFADMELIGIPHRIVISE 546

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           + +    +E K R     + + ++ VI +   R
Sbjct: 547 RGLDSGALEYKGRRDADNQSIGIDGVIEFLRER 579


>gi|229525492|ref|ZP_04414897.1| prolyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229339073|gb|EEO04090.1| prolyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|327483617|gb|AEA78024.1| Prolyl-tRNA synthetase Bacterial type [Vibrio cholerae LMA3894-4]
          Length = 571

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +E +++  +I++   + +
Sbjct: 546 YKNRRSGEKEAVAMASIIDFIQAKLA 571


>gi|42519522|ref|NP_965452.1| threonyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|73919800|sp|Q74IC0|SYT_LACJO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41583811|gb|AAS09418.1| threonyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 643

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 166/443 (37%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I +++   G
Sbjct: 227 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 287 YEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 347 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIREEFAKVLKLIMD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M     S      D +
Sbjct: 406 VYKDFDITDYYFRLSYR--------------DPKNTDKYYANDEMWETSQSMLKAAMDDL 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 452 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 501

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP +  +I +   ++   
Sbjct: 502 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--EEAHG 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+ A L+K G     D   E++G +   +     P  +++G + ++ + V ++   
Sbjct: 557 EYADKVRAELAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDEEMNANGVNVRRYG 616

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +   SL++ I        + 
Sbjct: 617 TEEQISKSLDDFIAEIDADVKSY 639


>gi|227889526|ref|ZP_04007331.1| threonyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227850004|gb|EEJ60090.1| threonyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 643

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 165/443 (37%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I +++   G
Sbjct: 227 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 287 YEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 347 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIREEFAKVLKLIMD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M     S      D +
Sbjct: 406 VYKDFDITDYYFRLSYR--------------DPKNTDKYYANDEMWERSQSMLKAAMDDL 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 452 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 501

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP +  +I +   ++   
Sbjct: 502 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--EEAHG 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +K+   L+K G     D   E++G +   +     P  +++G + ++ + V ++   
Sbjct: 557 AYADKVREELAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDEEMNANGVNVRRYG 616

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +   SL+E IN       + 
Sbjct: 617 TEEQISKSLDEFINEIDADVKSY 639


>gi|254225105|ref|ZP_04918719.1| prolyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125622492|gb|EAZ50812.1| prolyl-tRNA synthetase [Vibrio cholerae V51]
          Length = 571

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTLIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +E +++  +I++   + +
Sbjct: 546 YKNRRSGEKEAVAMASIIDFIHAKLA 571


>gi|328953980|ref|YP_004371314.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454304|gb|AEB10133.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 640

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 148/442 (33%), Gaps = 51/442 (11%)

Query: 8   LPILQENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L  L+E  R      H+ + R  G+     +   G+  + P G +    +    R E  R
Sbjct: 233 LHFLEEAKR----RDHRRLGRELGLFSIEEEAGPGLVIYHPKGARLRLVLEDFERREHLR 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  PTL   DLW  SG +++Y + M    +         P +      I++S I+
Sbjct: 289 RGYQIVMGPTLLKLDLWKRSGHFENYRENMY-FTEIEGIDYGIKPMNCLAHMLIYKSSIR 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   +++    R E      G+ R R+F   DA+     P+  +     +     
Sbjct: 348 SYRELPLRLFELGTVHRHERSGVLHGLTRVRQFTQDDAHIL-CRPDQVETEIAGVIDFVA 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G +   +   + P     S E    A +       +++        E   +   
Sbjct: 407 EVMAVFGFEY-EVELSTRPEKSIGSDEDWERATSALINALQTRNLPFATCEGEGAFYGPK 465

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                             K    R  +   +      ++LP     
Sbjct: 466 IDIKL---------------------------KDAINRRWQCATV---QCDFTLPERFDL 495

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG  H  V +    +G++     V+   + G   +W   +AP +  ++ +     
Sbjct: 496 TYIGPDGNPHRPVMLHRVILGSLERFLGVLIEHYAGAFPVW---LAPVQAIILPVTDR-- 550

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +  RL      V  D   E++G +   A L   P  +I+G + V+   + ++
Sbjct: 551 -AHPFALDVARRLQAEELRVETDLRNEKLGLKIREAQLQKIPYMIIIGDREVAAQTLSVR 609

Query: 420 HRLTGIREDMSLEEVINYASHR 441
                  +D   EE +      
Sbjct: 610 RLDGTEIKDTPWEEFVRLLKTE 631


>gi|188587611|ref|YP_001919651.1| prolyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|226699131|sp|B2UY89|SYP_CLOBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188497892|gb|ACD51028.1| prolyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 570

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  +    +     
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTECDYAA 231



 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 100/181 (55%), Gaps = 2/181 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    S+   K   +RG EVGHIF  GTKYS  M A F   +GK+    MG YGIG  R 
Sbjct: 387 EGEACSICGGKLTISRGTEVGHIFKLGTKYSEAMDAKFIAENGKEAPFIMGCYGIGVTRT 446

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A++IE  +D  GI+WP +VAP+ +S+I +   D+       K+Y  L  +G +   DD 
Sbjct: 447 MASIIEQHNDESGIVWPLAVAPYHVSVIAVNVKDEEQVKIATKLYEDLKSIGVEALLDDR 506

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F  ++++G P+++ VG K V D +VE K R TG  E + +E+V       F  
Sbjct: 507 NERAGVKFKDSEIMGIPMRITVGKKIV-DGEVEFKLR-TGDMEVVKIEDVCQIVKGEFDK 564

Query: 445 N 445
           N
Sbjct: 565 N 565


>gi|71064999|ref|YP_263726.1| prolyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|114152234|sp|Q4FUL6|SYP_PSYA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71037984|gb|AAZ18292.1| prolyl-tRNA synthetase, class IIa [Psychrobacter arcticus 273-4]
          Length = 572

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LM+R G+I + + G+Y WLP+G + L  V  I+REE
Sbjct: 1   MKASQFLFATLKETPSDADIASSQLMVRAGLIRKIASGLYIWLPMGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW  +GR++ YG E+LR  DR+D+  + GPTHEEV+T++ + 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQMTGRFNDYGPELLRFKDRHDRDFVLGPTHEEVITNLAQG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFGVMR+REF MKDAYSF +       +Y+ M+ +
Sbjct: 121 ELRSYKQLPITFFQIQNKFRDEIRPRFGVMRAREFTMKDAYSFHVDQASLAKTYDDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YTRIFTRLGLDFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSD 225



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 8/202 (3%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  M+ T  G 
Sbjct: 371 MNWERDANITRIVDIRNVNQGDPSPDGKGTLQIKRGIEVGHIFQLGNKYSQAMNCTVSGD 430

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLINIKAHDQ 359
           DGK   + MG YGIG  R++AA IE ++D  GI+WP      DS+APF+++++ +K+ ++
Sbjct: 431 DGKPVTLMMGCYGIGVSRIIAAAIEQNNDENGIMWPLTPNISDSLAPFEVAIVPMKSKEE 490

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +Y  L  +G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E  
Sbjct: 491 TVMQTATALYDELKALGVNVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEDKYEYI 550

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           +R    ++ +S +EV+   S +
Sbjct: 551 NRRDTEKQLLSRDEVLAKVSSK 572


>gi|281357061|ref|ZP_06243551.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281316619|gb|EFB00643.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 591

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 148/442 (33%), Gaps = 38/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD      +L L +        G+  W P G           +EE  + G
Sbjct: 184 YLKQQEEAAKRDHRKLGVELDLFS-FSDNVGPGLVLWHPKGAFIRHTFETFWKEEHYKNG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  + LW  SG    Y   M      ++K     P +     ++++S ++SY
Sbjct: 243 YELLYTPHIGQSVLWETSGHLSFYKDGMYSPMQIDEKDYYVKPMNCPFHIEVYQSRLRSY 302

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++   +R E      G++R R F   D++    TPE  +    ++    L I
Sbjct: 303 RELPLRWAELGTVYRYEKSGALHGLLRVRGFTQDDSHII-CTPEQIEDEIAEVLRFSLYI 361

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I     + P       E    A     +                        
Sbjct: 362 WKSFGFTEIKPYLSTRPAKAVGEPERWEKALVSLRKAIDKLGLECEVDEGGG-------- 413

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D++    + +    +    F    ++      T+ G
Sbjct: 414 ------------AFYGPKIDLKVKDAIGREWQTATIQFD----FNLPERF----DMTYIG 453

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H    +    +G++     ++   + G   +W   +AP +  ++ +        D
Sbjct: 454 EDGKKHRPYMVHRALMGSLERFFGILIEQYAGAFPLW---LAPEQARILPV---SDRQHD 507

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A   +   L   G  V  D     +G++   A     P  ++VG +  +D  + +++R  
Sbjct: 508 AAMALKKELRLKGFRVEVDVKAASLGAKIKDARKERIPYMLVVGEREAADGTMAVRNRRE 567

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+L++++        N 
Sbjct: 568 GELGTMTLDQLVEKMRFEVDNK 589


>gi|268319910|ref|YP_003293566.1| threonyl-tRNA synthetase 1 [Lactobacillus johnsonii FI9785]
 gi|262398285|emb|CAX67299.1| threonyl-tRNA synthetase 1 [Lactobacillus johnsonii FI9785]
          Length = 643

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 166/443 (37%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I +++   G
Sbjct: 227 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 287 YEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 347 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIREEFAKVLKLIMD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M     S      D +
Sbjct: 406 VYKDFDITDYYFRLSYR--------------DPKNTDKYYANDEMWEKSQSMLKAAMDDL 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 452 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 501

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP +  +I +   ++   
Sbjct: 502 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--EEAHG 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+ A L+K G     D   E++G +   +     P  +++G + ++ + V ++   
Sbjct: 557 EYADKVRAELAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDEEMNANGVNVRRYG 616

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +   SL++ I        + 
Sbjct: 617 TEEQISKSLDDFIAEIDADVKSY 639


>gi|88810462|ref|ZP_01125719.1| prolyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88792092|gb|EAR23202.1| prolyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 569

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + + L   +E P DAEI SH+LMLR G+I +   G+Y+WLPLG + L NV  ++REE
Sbjct: 1   MRVTGFPLFTSREIPADAEIISHQLMLRAGLIARLGAGLYTWLPLGLRVLRNVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDRIGSLEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHAREFCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP T+YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L     + +Y  M  +
Sbjct: 121 EIHSYRQLPVTYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDQASLEATYRAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RL L    +RA++G IGG +S EF VLAD+GE  +   +      
Sbjct: 181 YSRIFQRLNLDFRAVRADTGAIGGSVSEEFHVLADSGEDAIAVCRHCNYAA 231



 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 3/202 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSA 300
                +     A     +D+   +  +  P         RGIEVGH+F  G KYS  M A
Sbjct: 364 WHWIDLNWGRDAALPERADLRTVRSGEGCPSCAGSLQIKRGIEVGHVFQLGAKYSESMDA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
                 G    + MG YGIG  RVVAA IE +HD +GIIWP  +APF++++++I AH  +
Sbjct: 424 RVLNEHGDQVPMIMGCYGIGVSRVVAAAIEQNHDERGIIWPTPLAPFQVAIVSINAHRSE 483

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E+++  L   G +  WDD   + G +FA  +L+G P ++++  + +S   VE +
Sbjct: 484 AVHNEAERLHEALGAAGLEPLWDDREARPGVKFADMELIGIPHRLVISDRGLSAGTVEYR 543

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R       +  E V+ +    
Sbjct: 544 GRSEPTSRHLPCERVVEFLRDL 565


>gi|85858497|ref|YP_460699.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85721588|gb|ABC76531.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 645

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 157/443 (35%), Gaps = 51/443 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L IL+E    A+   H+ + +   +     +   G+  + P G      +    ++E  
Sbjct: 241 YLKILEE----AKKRDHRKLGKDLDLFQVSEEAGAGLIIFHPKGTILRTIIEDWEKKEHL 296

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   DLW +SG +D Y + M    +   ++    P +      I+++ I
Sbjct: 297 RRGYDMVMGPQILKVDLWKKSGHFDHYRENMY-FTEVEGQSYGIKPMNCLSHMLIYKTKI 355

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  ++++    R E      G++R+R+F   DA+    TPE        +    
Sbjct: 356 RSYRDLPIRYFELGTVHRHEKTGVLHGLLRARQFTQDDAHIL-CTPEQLNSEIRAIADFV 414

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                  G +   +   + P     S +   LA +                  +   +  
Sbjct: 415 GYAMKIFGFEY-EVELSTRPDNSIGSDQDWELATSALENALKDNQMTYDINEGDGAFYGP 473

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                               K    R  +   I      ++LP    
Sbjct: 474 KIDFKL---------------------------KDALKRKWQCATI---QCDFTLPERFD 503

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ GADG+ H  V +    +GA+     V+   + G   +W   +AP +  L+++    
Sbjct: 504 LTYVGADGEKHRPVMLHRVILGAIERFMGVLIEHYGGAFPVW---LAPVQAILLSVT--- 557

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  + +Y +L   G  V  D   E++G +   A     P  +++G K ++  +V +
Sbjct: 558 DRHIPYGKTVYQQLMDAGIRVEGDFRNEKLGYKIREAQTQKIPYMLVIGDKEMASGEVAV 617

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       + +   I     +
Sbjct: 618 RQRGGDNLGTLPVSAFIELVKEK 640


>gi|251778178|ref|ZP_04821098.1| proline--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082493|gb|EES48383.1| proline--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 570

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  +    +     
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTECDYAA 231



 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 100/181 (55%), Gaps = 2/181 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    S+   K   +RG EVGHIF  GTKYS  M A F   +GK+    MG YGIG  R 
Sbjct: 387 EGEACSICGGKLTISRGTEVGHIFKLGTKYSEAMDAKFIAENGKEAPFIMGCYGIGVTRT 446

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A++IE  +D  GI+WP +VAP+ +S+I +   D+       K+Y  L  +G +   DD 
Sbjct: 447 MASIIEQHNDESGIVWPLAVAPYHVSVIAVNVKDEEQVKIATKLYEDLKSIGVEALLDDR 506

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F  ++++G P+++ VG K V D +VE K R TG  E + +E+V       F  
Sbjct: 507 NERAGVKFKDSEIMGIPMRITVGKKIV-DGEVEFKLR-TGDMEVVKIEDVCQIVKGEFDK 564

Query: 445 N 445
           N
Sbjct: 565 N 565


>gi|254285550|ref|ZP_04960514.1| prolyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|150424412|gb|EDN16349.1| prolyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 571

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +E +++  +I++   + +
Sbjct: 546 YKNRRSGEKEAVAMASIIDFIQAKLA 571


>gi|229815406|ref|ZP_04445738.1| hypothetical protein COLINT_02454 [Collinsella intestinalis DSM
           13280]
 gi|229808939|gb|EEP44709.1| hypothetical protein COLINT_02454 [Collinsella intestinalis DSM
           13280]
          Length = 569

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  + P L+E+P +AE+ASH+LMLR GMI + + G+YS+LPL  ++L  +  I+R+E
Sbjct: 1   MKMSNLYAPTLKEDPAEAELASHRLMLRAGMIRKQAAGLYSYLPLAWRSLRKIEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A +W ESGRY+ YG E++R++DR+++  + GPTHEE +TD+ ++
Sbjct: 61  MDAAGAQELLMPIMVDAQVWRESGRYNVYGPELMRISDRHEREFVLGPTHEETVTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF+ T E  + +Y+ M  +
Sbjct: 121 ELKSYKQLPVNLYQIQDKFRDEMRPRFGLMRGREFIMKDGYSFNATQESLQETYDDMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I  R GLK++P+ A+SG IGGD S EF+ LAD GE  +          
Sbjct: 181 YANICERCGLKALPVVADSGQIGGDTSVEFMALADAGEAALVYCDACGYAA 231



 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 108/190 (56%), Gaps = 2/190 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+      D  P      A  RGIEV  +F  GTKYS  M ATF   +G++    MG 
Sbjct: 379 WEDLITVVAGDPCPHCGAPLAGARGIEVSQVFQLGTKYSEAMGATFADENGEEKPFLMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YG+G  R +AA +E  HD  GIIWP S+AP+++S++ +      C + C+++ A L + G
Sbjct: 439 YGVGVSRTLAASVEQHHDENGIIWPVSIAPYEVSIMPLDPTIPECAEVCDRLTAELCEAG 498

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD   + G +FA  DL+GFP Q+++G + + +  VE+K R TG RED++++EV +
Sbjct: 499 IEVIVDDRDIRPGVKFADNDLMGFPYQIVLGKRGLKNGTVELKDRATGEREDVAIDEVAS 558

Query: 437 YASHRFSNNR 446
             +    + R
Sbjct: 559 KVADLVISQR 568


>gi|187933014|ref|YP_001884453.1| prolyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|226699132|sp|B2TIF5|SYP_CLOBB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187721167|gb|ACD22388.1| proline--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 570

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  +    +     
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTECNYAA 231



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 4/198 (2%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                      D  N    ++ P    K   +RG EVGHIF  GTKYS  M A F   +G
Sbjct: 370 NYGRDFEGTIGDYRNVVEGEACPTCGGKLTISRGTEVGHIFKLGTKYSEAMDAKFIAENG 429

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+    MG YGIG  R +A++IE  +D  GI+WP +VAP+ +S+I +   D+       K
Sbjct: 430 KEAPFIMGCYGIGVTRTMASIIEQHNDENGIVWPLAVAPYHVSVIAVNVKDEEQVKIATK 489

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L  +G +   DD  E+ G +F  ++++G P+++ VG K V D +VE K R+ G  E
Sbjct: 490 LYEDLKSMGVEALLDDRNERAGVKFKDSEIMGIPMRITVGKKIV-DGEVEFKLRI-GDME 547

Query: 428 DMSLEEVINYASHRFSNN 445
            + +E+V       F  N
Sbjct: 548 VVKIEDVCQMVKGEFDKN 565


>gi|239999200|ref|ZP_04719124.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240080454|ref|ZP_04724997.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|240113176|ref|ZP_04727666.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240115935|ref|ZP_04729997.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|240118232|ref|ZP_04732294.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|240123781|ref|ZP_04736737.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|240125970|ref|ZP_04738856.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|240128484|ref|ZP_04741145.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493969|ref|ZP_05107140.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268603943|ref|ZP_06138110.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268682406|ref|ZP_06149268.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268684564|ref|ZP_06151426.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|226513009|gb|EEH62354.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268588074|gb|EEZ52750.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268622690|gb|EEZ55090.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268624848|gb|EEZ57248.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 570

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G T    +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 569


>gi|114570943|ref|YP_757623.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Maricaulis
           maris MCS10]
 gi|122315357|sp|Q0AM08|SYT_MARMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114341405|gb|ABI66685.1| Ser-tRNA(Thr) hydrolase [Maricaulis maris MCS10]
          Length = 644

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 159/449 (35%), Gaps = 51/449 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K  L  ++E    AE   H+ + +        + ++G   W P G +    V + +R
Sbjct: 227 KQLKAHLHRIEE----AEKRDHRKLGKQMELFHFQEEAQGQVFWHPNGWRLYRTVTSYMR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDI 117
                 G +E+  P L     W  SG +D Y + M   + D+ +K +   P +      +
Sbjct: 283 RRLEAAGYVEIRTPQLMDRKFWEASGHWDKYRENMFISSIDQEEKVLAVKPMNCPCHVQV 342

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F    KSYR+LP    +     R E      G+MR R F+  DA+ F  T +      + 
Sbjct: 343 FNQGQKSYRDLPLRMAEFGSCHRYEPSGSLHGLMRVRGFVQDDAHIF-CTSDQITAEVSD 401

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  ++   G +   ++    P     S E    A+        +        P + 
Sbjct: 402 FCELLKSVYADFGFEEPRIKFSDRPEQRVGSDEVWDQAEASLKAAAEASGLDYEYNPGDG 461

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   +                               K    R  + G I      ++L
Sbjct: 462 AFYGPKLDF---------------------------VVKDAIGREWQTGTI---QCDFNL 491

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  + A+F G D + H  V +    +G++     V+  S+ GK   W   +AP ++ +  
Sbjct: 492 PERLDASFIGDDSEKHRPVMLHRAILGSLERFLGVLIESYAGKLPFW---LAPRQVVIAT 548

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +         E++ A + K G     D   E+I  +     +   P+  +VG K   D
Sbjct: 549 ITSD---ADGYAEEVKAAMVKAGLHAETDLRNEKINYKVREHSVGKVPVIAVVGRKEAED 605

Query: 414 SKVEIKHRLTGIR--EDMSLEEVINYASH 440
             + ++    G +  E +SL + I   S 
Sbjct: 606 GTLALRFLGEGGKTQEILSLADAIARLSE 634


>gi|268595028|ref|ZP_06129195.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599257|ref|ZP_06133424.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268686874|ref|ZP_06153736.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268548417|gb|EEZ43835.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583388|gb|EEZ48064.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268627158|gb|EEZ59558.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 580

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 11  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 71  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 131 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 191 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 241



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G T    +    +          +D            A      D+ N    D  P
Sbjct: 346 LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 405

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 406 DGQGRLKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 465

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G
Sbjct: 466 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAG 525

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 526 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 579


>gi|241889888|ref|ZP_04777186.1| threonyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863510|gb|EER67894.1| threonyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 647

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 170/445 (38%), Gaps = 33/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++ + + +   RD      +L + T    +   G+  WLP G      +   I +++ 
Sbjct: 228 LEQHLVRLQEARERDHRKLGKELGIFT-TSQKVGAGLPLWLPNGATIRRTIERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P + S DL++ SG ++ Y ++M    + + + M+  P +      ++++  
Sbjct: 287 ELGYDHVYTPIMGSKDLYITSGHWEHYQEDMFPPMEMDHETMVLRPMNCPHHMMVYKNER 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R R   + DA+ F + P+  K  +       
Sbjct: 347 HSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDAHIF-VRPDQLKDEFKLTVGLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +  LG+K+   R                  D   T+ +   D M         +  D
Sbjct: 406 EEAYKDLGIKNFSYRLSYR--------------DPENTEKYFDDDAMWNNAQQMLKETAD 451

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+ +  +     A      + ++  ++ + + +S   ++    F    ++       
Sbjct: 452 ELGLDYV--EAEGEAAFYGPKLDVQVETAIGKQETLSTIQLD----FLLPERF----ELE 501

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H   +   GI + M  + A +   + G    W   ++P ++ +I +   +  
Sbjct: 502 YIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEYKGDLPTW---LSPNQVRIIPVN--NDY 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  ++I   L K G  V  DD  E++G +   A     P  +++G K V +  V ++ 
Sbjct: 557 HYDYSKEIMQELKKAGVKVAIDDRDEKLGYKIREAASKKIPYTLVIGDKEVENRNVNVRT 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
             +  +++ S  E         +  
Sbjct: 617 FGSLNQKEESFAEFKENILREINER 641


>gi|257067150|ref|YP_003153406.1| threonyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256799030|gb|ACV29685.1| threonyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 640

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 154/439 (35%), Gaps = 42/439 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E  ++ E   H+ + R       H+   G   + P G   ++ +     +  N  
Sbjct: 229 LEEYEELQKEIEKRDHRKIGREMNLFTFHEEGPGFPFFHPNGMILMNELLGWWTDVLNEN 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + DLW  SG +D Y + M      + +A    P +       + S+  S
Sbjct: 289 GYGEIKTPLILNEDLWHRSGHWDHYKENMY-FTKIDGEAYAIKPMNCPGSVLTYASNQHS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R EL     G+ R R F   DA+ + L P   K    +M      
Sbjct: 348 YRDLPIRLAEYGQVHRHELSGTLHGLFRVRTFTQDDAHVYCL-PSQIKEEVYRMIDLADL 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P       +    A+    +    +       P +        
Sbjct: 407 LYSTFGFKY-TIELSTRPDDFMGDIKDWDFAEDQLKKALEERGIEYEINPGDG------- 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  L D+     +     ++    F     +      T+ 
Sbjct: 459 -------------AFYGPKIDFHLLDAAKREWQCGTIQLD----FQLPQNF----DLTYI 497

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +G K   V +    +G++     V+     G+  +W   + P ++ +I +        
Sbjct: 498 DENGEKQRPVMLHRALLGSIERFIGVLTEHFAGRFPLW---LNPQQVEIIPV---SDKFI 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D CE +  ++ + G  V  D   E +G +   A L+     ++VG K  +  K+ +++R 
Sbjct: 552 DYCEDLKEKIKEAGFRVNIDYRSEGVGYKIRQAQLMRTNYMLVVGEKEETSGKLTVRNRD 611

Query: 423 TGIREDMSLEEVINYASHR 441
                D+S++E I   S  
Sbjct: 612 GEETADVSVDEFIEKISKE 630


>gi|119358269|ref|YP_912913.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355618|gb|ABL66489.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 675

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 76/462 (16%), Positives = 164/462 (35%), Gaps = 52/462 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLM---LRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           S+  L        +A+   H+ +   L   M+      G+  WLP G    + +   ++E
Sbjct: 250 SEKLLKEHTARVEEAKRRDHRKLGAELELFMLSPEIGSGLPVWLPKGAIIRNELETFLKE 309

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-----AMIYGPTHEEVM 114
           EQ + G + +  P + + +L+  SG Y  Y          +D+       +  P +    
Sbjct: 310 EQRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDENGKQEQYLLKPMNCPHH 369

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             I+   ++SYR+LP    +    +R E      G++R+R F   D++ +   P+     
Sbjct: 370 HLIYNVKLRSYRDLPIRLAEFGTVYRHEQSGELNGLVRARGFTQDDSHIY-CRPDQLVDE 428

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                     +F  LG   +  R                + D    + +     +     
Sbjct: 429 ICNAIDLTQHVFATLGFSDVQTRLS--------------MHDPLNQEKYGGTPEVWEQAE 474

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT- 292
            + T+  + + +N ++    A +         +                 +G  +  GT 
Sbjct: 475 KDVTEAANRMGINYVIGIGEASFYGPKIDFIVRDA---------------IGRKWQLGTV 519

Query: 293 --KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              Y +P     ++ G+D + H  + +     G+M     V+     G   +W   +AP 
Sbjct: 520 QVDYVMPERFDLSYIGSDSQKHRPIVIHRAPFGSMERFIGVLIEHTAGNFPLW---LAPV 576

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  ++ +    +      + I+ +L   G     D   E+IG +   A++   P  +I+G
Sbjct: 577 QAIIMPLG---EEIHAYAKSIHEKLLHSGIRAELDLRNEKIGKKIREAEIGKLPYMIIIG 633

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            K +   ++ ++   TG     + + +I+      +    +L
Sbjct: 634 QKELESGQLSLRRHRTGDEGLFTTDSLIDKLKKEIAAKTLIL 675


>gi|329667761|gb|AEB93709.1| threonyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 643

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 166/443 (37%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I +++   G
Sbjct: 227 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 287 YEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 347 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIREEFAKVLKLIMD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M     S      D +
Sbjct: 406 VYKDFDITDYYFRLSYR--------------DPKNTDKYYANDEMWETSQSMLKAAMDDL 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 452 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 501

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP +  +I +   ++   
Sbjct: 502 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--EEAHG 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+ A L+K G     D   E++G +   +     P  +++G + ++ + V ++   
Sbjct: 557 EYADKVRAELAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDEEMNANGVNVRRYG 616

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +   SL++ I        + 
Sbjct: 617 TEEQISKSLDDFIAEIDADVKSY 639


>gi|332251676|ref|XP_003274972.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 2
           [Nomascus leucogenys]
          Length = 756

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 150/445 (33%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 339 KMLKEWEKLQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 398

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y   M        +     P +      +F    
Sbjct: 399 KRGFQEVVTPNIFNSRLWMTSGHWQHYSDNMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 457

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 458 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 516

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 517 RTVYSIFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 570

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 571 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 609

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 610 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 663

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 664 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 723

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 724 RDNKVHGERTISETIERLQQLKQSR 748


>gi|332287873|ref|YP_004422774.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|313848445|emb|CBY17449.1| threonyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506736|gb|ADZ18374.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328915135|gb|AEB55968.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 635

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 155/447 (34%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +    + S G+  + P G    D +    +  
Sbjct: 221 KELKEHLHQLEEAKQRDHRVLGTKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRL 278

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L +  LW  SG + +Y + M  L   +D+     P +       +++
Sbjct: 279 HQLAGYKEIQTPQLMNRSLWEVSGHWSNYRENMYTLK-IDDEDYAIKPMNCPGCMLYYKT 337

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SY+  P    +I    R E+     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 338 RLHSYKQFPLRIAEIGHVHRYEVSGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILH 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL+   +   + P      S E   LA     +   + +      P +   
Sbjct: 397 LVSELYSTFGLEY-HLELSTRPEKATIGSDELWELATAALERALINSNTPFIINPGDGAF 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 456 YGPKIDI---------------------------HVKDAIQRTWQCGTI-QLDMFLPERF 487

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A G K   V +     G++     ++     G+  +W   ++P  I LI +   
Sbjct: 488 ELEYTNAQGEKSTPVMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHIRLITVADR 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      +K+     K+G  V  DD  E +  +   A  +     V +G + +  + + 
Sbjct: 545 HQ---PRAQKLATAWQKLGLIVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEQNTLA 601

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           I+ R   +  DM+ ++ IN      ++
Sbjct: 602 IRTRDNRVLNDMTEDKFINTILEEKNS 628


>gi|54310060|ref|YP_131080.1| prolyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|81828683|sp|Q6LN48|SYP_PHOPR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46914499|emb|CAG21278.1| putative prolyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 571

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S D     
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSSDSDYAA 231



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I        A   D+ N    D  P  +      RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELAQVEDLRNVVEGDLSPCGQGTIQLKRGIEVGHIFQLGTNYSKKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK   ++MG YGIG  R+VA+ IE ++D  GIIWP ++APF+++++ +    
Sbjct: 426 NCNVLGPDGKSATLEMGCYGIGVSRIVASAIEQNNDENGIIWPTALAPFQVAIVPMNMAK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A E +YA L+  G +V +DD  E+ G  F   +L+G P  +++G++ + + ++E
Sbjct: 486 SEEVKAAAESLYAELTAAGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGNRSLENGEME 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R  G +  + + +V+     + +
Sbjct: 546 YKDRRDGNKVAVPVADVVEMIKQKLA 571


>gi|237738009|ref|ZP_04568490.1| prolyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229419889|gb|EEO34936.1| prolyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 569

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKL+LR GMI + + G+Y++LPLG KAL  V  I+R E
Sbjct: 1   MRFSKSYIKTLKETPKEAEIASHKLLLRAGMIKKLTSGVYTYLPLGLKALKKVENIVRRE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A+LW ESGR++  G  M++L DR  +  + GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEIFMPVLQPAELWKESGRWEVMGPLMMKLQDRAKRDFVLGPTHEEVVTDVIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     ++ M  +
Sbjct: 121 DVASYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHATRESLDEEFDNMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF   GLK  P+ A+SG IGG  S EF VLAD+GE ++   +      
Sbjct: 181 YKRIFSSCGLKFRPVEADSGAIGGSGSKEFHVLADSGEDEIIYCESCDYAA 231



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 94/181 (51%), Gaps = 1/181 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                        SARGIEVGHIF  GTKYS  + ATF    G  H + MG YGIG  R 
Sbjct: 390 PGHVCEKCGGTLASARGIEVGHIFKLGTKYSEKLEATFIDEKGVTHPIIMGCYGIGVSRT 449

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A+ IE ++D  GI+WP ++AP+ + +I     D       E++Y  L   G D   DD 
Sbjct: 450 LASAIEQNNDEFGIVWPSAIAPYVVDVIPANMKDAEQVALAEELYNSLLDEGIDTILDDR 509

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F  ADL+GFP +VI G K  ++  VE+K R TG   ++S +EVI         
Sbjct: 510 DERPGFKFKDADLIGFPFKVICGKK-AAEGIVELKIRKTGETFEISKDEVIYKVRELMKQ 568

Query: 445 N 445
            
Sbjct: 569 Y 569


>gi|327441016|dbj|BAK17381.1| prolyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 568

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/265 (42%), Positives = 165/265 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+++K F+P L+ENP DA++ SH+++LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQTKTFIPTLRENPSDADVKSHRMLLRAGFIRQNAAGVYSYLPLARRVLSKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P LQ A+LW ESGR+++YG E++RL DR+D+    G THEEV+T + R 
Sbjct: 61  MEAINSIELLMPALQPAELWQESGRWEAYGPELMRLKDRHDRDFALGATHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHSSRESLDATYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S                
Sbjct: 181 YSNIFTRLGLNFRAVIADAGTIGGKGTHEFMVLSEIGEDTIAYSDTSDYAANIEMAEVVV 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           +  +  + ++              E
Sbjct: 241 EYTAPTTPMKDIEKIETPDQKTIEE 265



 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GT YS  ++ATF    GK     MG YGIG  R++AAV E   D  G +W
Sbjct: 405 GIEVGHIFKLGTTYSEKLNATFLDEQGKAKPYIMGCYGIGVSRILAAVAEHFQDENGFVW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +AP+ + L+ + A D+      +++Y  L     +V +D+  E+ G +FA ADL+G 
Sbjct: 465 PAQLAPYDLQLVPVNAKDEAQVQLADELYGVLKSYRYEVLYDNRAERAGVKFADADLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P+++ VG K  S+  VE+K R TG   + + EEV++  +  F  N
Sbjct: 525 PVRITVGKK-ASEGLVEVKFRSTGESAEWAKEEVVDRLNEYFRQN 568


>gi|90413553|ref|ZP_01221544.1| prolyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90325485|gb|EAS41968.1| prolyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 571

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +     
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSSESDYAA 231



 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I        A   D+ N    D  P  +      RGIEVGHIF  GT YS  M
Sbjct: 366 DDKHYFGINWGRDVELAQVEDLRNVVEGDLSPCGQGTIQLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK   ++MG YGIG  RVVA+ IE ++D  GIIWP ++APF+++++ +    
Sbjct: 426 NCNVLGPDGKSVTLEMGCYGIGVSRVVASAIEQNYDENGIIWPTALAPFQVAIVPMNMAK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A E +YA L+  G +V +DD  E+ G  F   +L+G P  +++G++ + + ++E
Sbjct: 486 SEEVKAAAESLYAELTAAGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGNRSLENGEME 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R  G +  + + +V+     + +
Sbjct: 546 YKDRRDGNKVAVPVTDVVEMIKQKLA 571


>gi|217969648|ref|YP_002354882.1| prolyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|217506975|gb|ACK53986.1| prolyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 582

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAE+ S KLMLR GMI + + GIYS++P+G +A+  V AI+REE
Sbjct: 1   MRASQFHLFTLKEAPSDAEVVSQKLMLRAGMIRKVAAGIYSYMPMGLRAIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW E+GR+D  G E+LR  DR+++     PT EEV+TDI R 
Sbjct: 61  MDRAGAMELIMPMVQPAELWDETGRWDKMGDELLRFKDRHERDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ MF +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSEEAAGRSYDIMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   + A++G IGGD SHEF V+ADTGE  +   
Sbjct: 181 YKRIFDRLGLEYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYC 224



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 3/228 (1%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RV 277
           +V   +            +  D         +        +D+ N    D  P+ +    
Sbjct: 354 KVIADRTVAHMADFICGANEADFHFTGVNWGRDLPEPDQVADLRNVVEGDPSPDGRGVLA 413

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVGH+FY GTKYS  M+ATF   DGK  + +MG YGIG  R++ A IE +HD +G
Sbjct: 414 IQRGIEVGHVFYLGTKYSKAMNATFLDEDGKPKHFEMGCYGIGVTRILGAAIEQNHDARG 473

Query: 338 IIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           I+WP ++APF++ +  +     Q  RD  +K+Y  L   G D   DD  E+ G  FA  +
Sbjct: 474 IVWPRAIAPFEVVVCPVGWGKSQAVRDEAQKLYDALVATGVDAILDDRDERPGVMFADWE 533

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L+G P +V +G + + +  +E + R       +   EV+ +   R + 
Sbjct: 534 LIGVPHRVTIGDRGLKEGVIEYQGRRDAEAAKLPAGEVLGHVLERLNQ 581


>gi|238855713|ref|ZP_04646009.1| threonine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260665499|ref|ZP_05866346.1| threonyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282934764|ref|ZP_06340004.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313471817|ref|ZP_07812309.1| threonine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238831659|gb|EEQ24000.1| threonine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239528573|gb|EEQ67574.1| threonine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260560767|gb|EEX26744.1| threonyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281301175|gb|EFA93479.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 643

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 165/442 (37%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 228 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M    D  D  M+   P +      +++ HI+SY
Sbjct: 288 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    E  +  + K+    + +
Sbjct: 348 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LEQVQEEFAKILKLIMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D   T  + + D M            D + 
Sbjct: 407 YKDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLG 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 453 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----DLSYVG 502

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++H   M   G +G M    A +   + G    W   +AP ++ +I +        +
Sbjct: 503 QDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPEQVEIIPVNL--DAHGE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L K G     D   E++G +   +     P  +++G   ++ + V ++   T
Sbjct: 558 YAKKVRDELLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVLGDDEMNSNAVNVRPYGT 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +E MSL++ IN       + 
Sbjct: 618 EKQESMSLDQFINELQADVDSY 639


>gi|268596592|ref|ZP_06130759.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268601604|ref|ZP_06135771.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268550380|gb|EEZ45399.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268585735|gb|EEZ50411.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
          Length = 580

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 11  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 71  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 131 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 191 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 241



 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G T    +    +          +D            A      D+ N    D  P
Sbjct: 346 LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 405

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 406 DGQGRLKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 465

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G
Sbjct: 466 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAG 525

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 526 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 579


>gi|153802043|ref|ZP_01956629.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124122402|gb|EAY41145.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 571

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 546 YKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|50952758|gb|AAT90291.1| putative threonyl-tRNA synthetase [uncultured proteobacterium
           eBACred25D05]
          Length = 650

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 153/447 (34%), Gaps = 49/447 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L +L+E   RD      ++ L    + + + G   W P G K    +   +R +Q  
Sbjct: 234 REHLNMLEEAAKRDHRKLGKEMDLF--HMQEEAPGQIFWHPNGWKIYTLLQDYMRRQQEV 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
            G +E++ P +    LW ESG +D Y + M  +    + A         P +      ++
Sbjct: 292 GGYVEVNTPQVVDRKLWEESGHWDKYQEHMFIVEVDEEHAREKSINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              IKSYR+LP    +     R E      G+MR R F   DA+ F    +  +    K 
Sbjct: 352 NQGIKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIF-CQEDQIESETKKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG     ++    P     S +    A+        S  F     P E  
Sbjct: 411 INFLSGVYKDLGFPKFAVKFSDRPKNRAGSDDVWDKAEGALKSATTSAGFDFELNPGEGA 470

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   +                                    R  + G        + LP
Sbjct: 471 FYGPKLEFVLTD---------------------------AIGRDWQCGT---LQVDFVLP 500

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A F G DG+ H  V +    +G+      ++  +  G+   W   +AP ++ + +I
Sbjct: 501 DRLDANFIGEDGQKHRPVMLHRAVLGSFERFIGILIENFAGRLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   + C +I   L  VG     D   E+I  +     +   P  + +G++ V D 
Sbjct: 558 VTD---ANEYCTEIVDALKLVGIRAESDLRNEKISYKVREHSVAKVPTILAIGNREVEDR 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            + ++       + ++ ++VI      
Sbjct: 615 AITVRTLGEKQTKTINFDQVILELQKE 641


>gi|229544430|ref|ZP_04433488.1| prolyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229324915|gb|EEN90592.1| prolyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 569

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SH+L+LR G I Q + G+Y++LPL +K L  + AIIREE
Sbjct: 1   MKQSKLFIPTLRDVPAEAEVKSHQLLLRAGYIRQIASGVYTYLPLAKKVLHKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G++E+ +P+LQ A+LW ESGR+ SYG +++RL DR+++    GPTHEEV+T + R+
Sbjct: 61  LEAIGSMELLMPSLQPAELWQESGRWYSYGPDLMRLKDRHERDFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 EVKSYKRLPLSLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHANKESLDETYKDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R  L    + A+SG IGG  + EF+VL++ GE  +  S       
Sbjct: 181 YTNIFSRCKLDFRAVLADSGAIGGKDTQEFMVLSEIGEDTIAYSDSSDYAA 231



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 128/266 (48%), Gaps = 7/266 (2%)

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG--ETQVFCSKDFMDFPIPSENTDFD 240
           ++ H LG ++I M A+   I   +  +   L   G  E     +   + + +       +
Sbjct: 304 KVKHLLGSETIEM-ADPEAIKSIMGADPGSLGPVGAPEQIRILADHAVRYVVNGICGANE 362

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           +     +   +         D+ N +  D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 363 NDFHYVNANPERDYRVDLYGDLRNIQEGDPSPDGKGTIRFARGIEVGHIFKLGTKYSEAM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A F   +G++  + MG YGIG  R + AV E  +D KG++WP ++APF + L+ +   D
Sbjct: 423 HAAFLDENGREQVMLMGCYGIGVSRTLTAVCEQHNDDKGLVWPVNLAPFDVHLVPVNMKD 482

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  E ++A L K    V  DD  E+ G +FA +DL+G P++V VG K  ++  VE+
Sbjct: 483 AQQSALAESLHAELEKQ-FTVLMDDRNERPGVKFADSDLIGLPVRVTVGKK-AAEGIVEV 540

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K R TG   ++  E++    S+  + 
Sbjct: 541 KIRKTGEVLEVKKEDLAETISNILAQ 566


>gi|4619|emb|CAA26666.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 734

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 161/439 (36%), Gaps = 41/439 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + +     + ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 323 AEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITP 382

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 383 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKSRERSYRELPWRV 441

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +     +F     I+   G +
Sbjct: 442 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTHDQIESEIENIFNFLQYIYGVFGFE 500

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A++                  +                
Sbjct: 501 F-EMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDG--------------- 544

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L   +  + ++  +  
Sbjct: 545 -----AFYGPKIDIMISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYERP 595

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++     GK   WP  ++P ++ ++ +    Q      E +  +
Sbjct: 596 VMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVKYQG---YAEDVRNK 649

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---- 427
           L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++    
Sbjct: 650 LHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNA 709

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S+EEV+    +     R
Sbjct: 710 TVSVEEVLKQLRNLKDEKR 728


>gi|114659241|ref|XP_001144153.1| PREDICTED: hypothetical protein [Pan troglodytes]
 gi|332844841|ref|XP_001144319.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           1 [Pan troglodytes]
          Length = 707

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 154/441 (34%), Gaps = 44/441 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 296 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 355

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 356 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 414

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 415 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLRFLQSVYST 473

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 474 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 521

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 522 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 564

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 565 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 618

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   
Sbjct: 619 LQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNK 678

Query: 425 IREDMSLEEVINYASHRFSNN 445
           I  ++ +   I+   +     
Sbjct: 679 IHGEILVTSAIDKLKNLKKTR 699


>gi|294668560|ref|ZP_06733657.1| proline--tRNA ligase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309523|gb|EFE50766.1| proline--tRNA ligase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 569

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RL L+  P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLDLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 112/252 (44%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +RA+ G  GG        L   G T    +    +          +D            A
Sbjct: 325 IRAQFGANGGS-------LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDA 377

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D+ N    D  P  + +    RGIEVGH+F    KY+  M+ +F   +GK   +
Sbjct: 378 AEPEFVDLRNVVEGDESPDGQGRLKLTRGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIM 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +KIYA 
Sbjct: 438 EMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAE 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     + +  
Sbjct: 498 LLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQTVPT 557

Query: 432 EEVINYASHRFS 443
            E+         
Sbjct: 558 GEIAAKVLAALK 569


>gi|19113156|ref|NP_596364.1| cytoplasmic threonine-tRNA ligase Trs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|3183175|sp|P87144|SYTC_SCHPO RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2104451|emb|CAB08788.1| cytoplasmic threonine-tRNA ligase Trs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 703

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 161/436 (36%), Gaps = 43/436 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           M+  K FL        +A    H+ + R       ++ S G   +LP G +  + +   +
Sbjct: 276 MQEYKTFL-------AEAAKRDHRKIGRDQELFFFNEISPGSCFFLPHGARIYNTLLKYM 328

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           R + ++ G  E+  P + + +LW  SG +++Y + M    D   +     P +      +
Sbjct: 329 RYQYSKRGYQEVITPNMYNVNLWKTSGHWNNYSENMFSF-DIEKEKYALKPMNCPGHCVM 387

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+S  +SYR+LP+      +  R+E      G+ R R F   DA+ F  TP+  +     
Sbjct: 388 FKSRDRSYRDLPWRVADFGVLHRNEFSGALSGLTRVRRFQQDDAHIF-CTPDQVRSEIEG 446

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            F     ++   G     +   + P                  + +           ++ 
Sbjct: 447 CFDFLKEVYGTFGFTF-HLELSTRP-----------------EEKYLGDLATWDKAEAQL 488

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               D        E      A      +  +FD+L    + +   ++      F  ++  
Sbjct: 489 KAALDASGYK--WELNAGDGAFYGPKIDITVFDALKRQHQCATIQLDFQLPERFQLEFHA 546

Query: 297 PMSATFKGADGKD----HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           P SA      G +      V +    +G++  + A++   + GK   WP  ++P ++ +I
Sbjct: 547 PASAEEAKESGNNNKYTRPVMVHRAILGSLERMIAILTEHYAGK---WPFWMSPRQVCII 603

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +        +  +K++  LS+    V  D     +  +   A L  +    +VG++  S
Sbjct: 604 PV---SAAAYNYADKVHNILSEADIFVDTDKSDNTLPKKIRNAQLAQYNFIFVVGAEEES 660

Query: 413 DSKVEIKHRLTGIRED 428
            + V +++R    ++ 
Sbjct: 661 TNSVNVRNRDDPKKQS 676


>gi|120554655|ref|YP_959006.1| prolyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|152112927|sp|A1U1F0|SYP_MARAV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120324504|gb|ABM18819.1| prolyl-tRNA synthetase [Marinobacter aquaeolei VT8]
          Length = 577

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPSDAEIISHQLMLRAGMIRKLAAGLYTWLPLGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWQESGRWEQYGGELLRLNDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSF L  E    +Y  M  +
Sbjct: 121 ELKSYKELPANFYQIQTKFRDERRPRFGVMRAREFIMKDAYSFHLNAESLDETYKVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF RLGL   P++A+SG IGG  SHEF VLA +GE  +  S
Sbjct: 181 YCNIFDRLGLDYRPVQADSGSIGGSSSHEFHVLASSGEDAIVFS 224



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 3/201 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D   L  +     A  +   D+ N    D+ P+        RGIEVGHIF  G KYS  M
Sbjct: 368 DDYHLTGVNWGRDAEISRVEDLRNVVEGDASPDGNGTLEIRRGIEVGHIFKLGNKYSKAM 427

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A+     GK   ++MG YGIG  R+VAA IE +HD KGIIWPD++APF+++++ +  H 
Sbjct: 428 NASVLDEHGKTSIMEMGCYGIGVSRIVAASIEQNHDEKGIIWPDAIAPFEVAIVTLNGHK 487

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             V  +A +K+Y +L + G DV  DD  E+ G +FA  +L+G P + +V  + +S   +E
Sbjct: 488 SPVVAEAGDKLYEQLRQAGYDVLLDDRNERPGVKFADIELIGIPHRFVVSERGLSAGTLE 547

Query: 418 IKHRLTGIREDMSLEEVINYA 438
            K R    ++D+ ++E +++ 
Sbjct: 548 YKGRRDEEKQDIPVDEALSFL 568


>gi|78184510|ref|YP_376945.1| threonyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123757112|sp|Q3AYC6|SYT_SYNS9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78168804|gb|ABB25901.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           sp. CC9902]
          Length = 611

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 151/440 (34%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD       L L + +  +   G+  W P G +    +    R+     G   +  
Sbjct: 204 EALRRDHRRLGKDLELFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYELLYT 262

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    LW  SG  D Y + M      +++     P +       + S ++SYR LP  
Sbjct: 263 PHVADISLWKTSGHLDFYAESMFGPMQVDEREYQLKPMNCPFHVLTYASKLRSYRELPIR 322

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+MR R F   DA+ F L P+       ++     RI      
Sbjct: 323 WAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PDQISDEILRILDLTERILSTFDF 381

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     S     LA  G T+    K +                       
Sbjct: 382 NHYEINLSTRPEKSIGSEAVWELATKGLTEALERKGWNFKIDEGGG-------------- 427

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KD 309
                 A      + K+ D++    + S   ++      FG  Y           DG K 
Sbjct: 428 ------AFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFGLDYVAA--------DGSKQ 473

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +     G++     ++  ++ G    W   +AP +I L+ +       +   E++ 
Sbjct: 474 QPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVTDD---VQPYAEQVL 527

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G     D  G+++G      + +  P+  ++G+K    + + ++ R  G     
Sbjct: 528 NQLKTAGIRATIDQSGDRLGKIIRTGEQMKIPVLAVIGAKEAEQNAISLRSRRDGDLGVT 587

Query: 430 SLEEVINYASHRFSNNRPVL 449
           S++ ++  A    +  +P L
Sbjct: 588 SVDALLKAAQRANAERQPGL 607


>gi|161344762|ref|NP_441328.2| prolyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|114152887|sp|P73942|SYP_SYNY3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 603

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/228 (49%), Positives = 150/228 (65%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL++R G I +   G+Y++LPL  + L+ V  I++EE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLVRAGFIRRLGSGLYAYLPLIWRVLEKVKRIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NRTGA E  +P LQ ++LW  SGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNRTGAQECLLPQLQPSELWKMSGRWDTYTESEGIMFALRDRLERELGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEASLKATYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +Y  IF R GL   P+ A+SG IGG  S EF+VLAD GE ++  ++
Sbjct: 181 DQAYRNIFSRCGLDFRPVDADSGAIGGSGSQEFMVLADAGEDEILYTE 228



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 1/177 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P  +  +ARGIEVGHIF  GTKYS  M ATF    G++  + MG YGIG  R+  A +
Sbjct: 425 HDPTGELKTARGIEVGHIFQLGTKYSQAMGATFTNEQGEEKPLVMGCYGIGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+++ ++     D+      E+IY        DV  DD  E+ G
Sbjct: 485 EQSYDKDGIIWPTAIAPYEVVIVVPNVGDEEQMQVAEQIYTEFQAAEVDVLLDDRNERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +F  ++L+G P +V+ G K +   ++E+  R     +++++  V+   +      +
Sbjct: 545 VKFKDSELIGIPYRVVTG-KSLKQGQLEVVKRADKSVQNLAIAAVVPTLTAWIKAEK 600


>gi|187479380|ref|YP_787405.1| prolyl-tRNA synthetase [Bordetella avium 197N]
 gi|114152173|sp|Q2KVA0|SYP_BORA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115423967|emb|CAJ50520.1| prolyl-tRNA synthetase [Bordetella avium 197N]
          Length = 576

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/219 (56%), Positives = 156/219 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P DAE+ASH+LM R GMI + + GIYS++PLG K +  V  IIREE
Sbjct: 1   MRASNYHINTLKEAPADAEVASHQLMTRAGMIRKLAGGIYSYMPLGLKVIRKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW ESGR++ YG+E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWQESGRWEQYGQELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  F+ IQ KFRDE RPRFGVMR REF MKDAYSFD    G+  SY+ MF +
Sbjct: 121 EIHSYRQLPVNFFHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAGAGRSYDIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           Y RIF RLGL    + A++G IGG  SHEF V+ADTGE 
Sbjct: 181 YHRIFRRLGLAFRAVAADTGSIGGSRSHEFQVIADTGED 219



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGT 292
              +  D         +        +D+ N    D  P+ K      RGIEVGH+F+ GT
Sbjct: 363 CGANRPDFHLRGVNWGRDLPEPELVTDLRNVVAGDPSPDGKGTLAIQRGIEVGHVFFLGT 422

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + ATF    GK   +QMG YGIG  R+V A IE + D +GIIWP ++APF++ + 
Sbjct: 423 KYSEALKATFLDETGKPALMQMGCYGIGVTRIVGAAIEQNFDNRGIIWPRAIAPFEVVIC 482

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +     +  R+  E +Y  L + G DV  DD   + G  FA  +L+G PL+V +G + +
Sbjct: 483 PVGWGKSETVRNKSEALYQALREQGIDVILDDRDARPGVMFAEWELIGVPLRVTIGDRGL 542

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +D  +E++ R       +S++  +    ++  
Sbjct: 543 NDGVIELQGRRDTETVKISVDSALKEILNKLE 574


>gi|13435498|gb|AAH04621.1| Tars protein [Mus musculus]
          Length = 457

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 152/440 (34%), Gaps = 40/440 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   ++   +A+   H+ + R       H+ S G   +LP G    + +   IR E  +
Sbjct: 41  LLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRK 100

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F    +
Sbjct: 101 RGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDHRPR 159

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 160 SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFLR 218

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 219 TVYSVFGFSF-KLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDG------ 271

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 272 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 311

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C 
Sbjct: 312 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TCD 365

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I+ R
Sbjct: 366 EYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTR 425

Query: 422 LTGIREDMSLEEVINYASHR 441
              +  + ++EE +      
Sbjct: 426 DNKVHGERTVEETVRRLQQL 445


>gi|167389590|ref|XP_001739012.1| threonyl-tRNA synthetase, cytoplasmic [Entamoeba dispar SAW760]
 gi|165897485|gb|EDR24628.1| threonyl-tRNA synthetase, cytoplasmic, putative [Entamoeba dispar
           SAW760]
          Length = 676

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 164/448 (36%), Gaps = 39/448 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +K  L    +   +A+   H+L+ R       H  S G   WLP G +  + +  +IR E
Sbjct: 263 TKDLLKEYIKRAEEADKRDHRLIGRQQDLFFFHVLSPGSCFWLPHGTRIYNKLVQLIRSE 322

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +  + LW  SG +  Y  +M    +   +     P +      +F S
Sbjct: 323 YRVLGYQEVITPNIFLSTLWETSGHWQHYKDDMFSF-ECEKQTFALKPMNCPGHCVMFAS 381

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP  + +  +  R+EL     G+ R R F+  D++ F  T +  +     +  
Sbjct: 382 KKRSYRELPLRYAEFGVLHRNELTGALHGLTRVRRFVQDDSHIF-CTMDQIESEVTGVLN 440

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              +I+   G K+  +   +      +   E    A+   TQV           P +   
Sbjct: 441 LMKKIYKIFGFKT-EIALSTRNEKKFMGEIETWNKAEAMLTQVLNDSHLPFVINPGDG-- 497

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ D+L    +V+   ++    F    ++ L  
Sbjct: 498 ------------------AFYGPKIDIRIEDALGRKHQVATVQLD----FQLPLRFKLDY 535

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +       K   V +    +G++    A++     GK   WP  ++P ++ +  +    
Sbjct: 536 MSEDPNQPLK-TPVMVHRAVLGSIERFTAILTEHLAGK---WPFWLSPRQVMVCTV---S 588

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +   KI   L+  G     DD   ++  +   A +  +   +++G + +  + V +
Sbjct: 589 EKYNEYGAKITKELNDAGFYADLDDSDNKLPKKIRNAQVAQYNFILVIGEEELVSNSVNV 648

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R + +   +   E I +     ++ +
Sbjct: 649 RTRKSKVEGKVEFSEFIKHLKQLEADKQ 676


>gi|21674935|ref|NP_663000.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|34222753|sp|Q8KAN0|SYT_CHLTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21648164|gb|AAM73342.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 657

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/456 (17%), Positives = 159/456 (34%), Gaps = 56/456 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML-RTGMIH---QHSKGIYSWLPLGQKALDNVNAII 57
           +  K  +  L+E    A    H+ +    G+     +   G+  WLP G    + +   +
Sbjct: 237 KLLKEHIARLEE----ARKRDHRKLGAELGLFMLTPEVGSGLPIWLPNGAIIRNELETFL 292

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADR--NDKAMIYGPTHEE 112
           + EQ + G + +  P + + +L+  SG Y  Y           D    ++  +  P +  
Sbjct: 293 KAEQRKRGYVPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYKDETGREEQYLLKPMNCP 352

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               I+   ++SYR+LP    +    +R E      G++R+R F   D++ +   P+   
Sbjct: 353 HHHLIYSQTLRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIY-CRPDQLV 411

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                       +F+ LG   +  R                L D      +     +   
Sbjct: 412 DEICNAIDLTRFVFNTLGFDEVETRLS--------------LHDPENQSKYGGTAEVWGQ 457

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
              +  +  D + +   +    A +         +                 +G  +  G
Sbjct: 458 AEKDVKEAADRMGIKYFIGIGEASFYGPKIDFIVRDA---------------IGRKWQLG 502

Query: 292 T---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           T    Y +P     ++ G+DG+ H  V +     G+M     V+     G   +W   +A
Sbjct: 503 TVQVDYVMPERFDLSYIGSDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLW---LA 559

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +  ++ I    +   D   ++YA+L + G     D   E+IG +   A+L   P  ++
Sbjct: 560 PVQAVVLPIA---EEVHDYAREVYAKLHEAGIRTELDLRSEKIGKKIREAELSKIPAMLV 616

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +G       +V ++    G      ++E+I      
Sbjct: 617 IGRNEQEKGEVSLRRHRKGDEGSFGVDELIARLCEE 652


>gi|317495533|ref|ZP_07953901.1| threonyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914347|gb|EFV35825.1| threonyl-tRNA synthetase [Gemella moribillum M424]
          Length = 647

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 169/445 (37%), Gaps = 33/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++ + + +   RD      +L + T    +   G+  WLP G      +   I +++ 
Sbjct: 228 LEQHLVRLQEARERDHRKLGKELGIFT-TSQKVGAGLPLWLPNGATIRRTIERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L S DL++ SG ++ Y ++M    + + + M+  P +      ++++  
Sbjct: 287 ELGYDHVYTPVLGSKDLYITSGHWEHYQEDMFPPMEMDHETMVLRPMNCPHHMMVYKNER 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R R   + DA+ F + P+  K  +       
Sbjct: 347 HSYRELPIRIAELGMMHRYESSGAVSGLQRVRGMTLNDAHIF-VRPDQLKDEFKLTVGLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +  LG+ +   R                  D   T+ +   D M         +  D
Sbjct: 406 EEAYKDLGITNFSYRLSYR--------------DPENTEKYFDDDVMWNNAQQMLKETAD 451

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+ +  +     A      + ++  ++ + + +S   ++    F    ++       
Sbjct: 452 ELGLDYV--EAEGEAAFYGPKLDVQVETAIGKQETLSTIQLD----FLLPERF----ELE 501

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H   +   GI + M  + A +   + G    W   +AP ++ +I +   +  
Sbjct: 502 YIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEYKGDLPTW---LAPNQVRIIPVN--NDY 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  ++I   L K G  V  DD  E++G +   A     P  +++G K V +  V ++ 
Sbjct: 557 HYDYSKEIMQELKKAGVKVAIDDRDEKLGYKIREAANKKIPYTLVIGDKEVENKGVNVRT 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
             +  +++ S  E         +  
Sbjct: 617 FGSHDQKEESFVEFKENILKEINER 641


>gi|300812909|ref|ZP_07093302.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496107|gb|EFK31236.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 643

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 163/442 (36%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 228 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRIIERYIVDKEVAAGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M    D  +  M+   P +      I++ HI+SY
Sbjct: 288 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    +  +  + +     + +
Sbjct: 348 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFARTLQIIMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +H   +     R                  D   T  + + D M     S      D + 
Sbjct: 407 YHDFDINDYYFRLSYR--------------DPKNTDKYFANDEMWERSQSMLKAAMDDMG 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 453 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----ELSYIG 502

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG++H   M   G +G M    A +   + G    W   +AP +  +I +        D
Sbjct: 503 ADGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVNL--DAHSD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L   G     D   E++G +   +     P  +++G   ++   V ++   T
Sbjct: 558 YAKKVRDELVAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGT 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +   SL E ++  S   ++ 
Sbjct: 618 EEQNSESLAEFMDKLSKDVASY 639


>gi|166154796|ref|YP_001654914.1| threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155671|ref|YP_001653926.1| threonyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336072|ref|ZP_07224316.1| threonyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|238687393|sp|B0B8F5|SYT_CHLT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238687442|sp|B0BA34|SYT_CHLTB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|165930784|emb|CAP04281.1| threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931659|emb|CAP07235.1| threonyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 635

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 154/447 (34%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +      S G+  + P G    + +    +  
Sbjct: 221 KELKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QTCSAGMPFFHPRGMVVWNALVDYWKRL 278

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  ++  P L + +LW  SG +++Y + M  L   +++     P +       +++
Sbjct: 279 HQRAGYQQIQTPQLMNRELWEISGHWENYKENMYTLTV-DEEDYAIKPMNCPGCMLYYKT 337

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR  P    +I    R EL     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 338 QLHSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILN 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL+   +   + P  G   S +   LA     +            P E   
Sbjct: 397 LVSELYGTFGLEY-HLELSTRPEQGTIGSDDLWELATEALKRALVKSQKPFIISPGEGAF 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 456 YGPKIDI---------------------------HVKDAINRTWQCGTI-QLDMFLPERF 487

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A G K   + +     G++     ++     G+  +W   ++P  + +I +   
Sbjct: 488 DLKYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHVRIITVADR 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +++    S++G  V  D   E +  +   A  +     + +G K +    + 
Sbjct: 545 HEA---RAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLA 601

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R   +  D+++E+  +       +
Sbjct: 602 VRTRDNRVLNDIAVEQFSHVILEELRS 628


>gi|1653092|dbj|BAA18008.1| proline-tRNA ligase [Synechocystis sp. PCC 6803]
          Length = 617

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/228 (49%), Positives = 150/228 (65%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL++R G I +   G+Y++LPL  + L+ V  I++EE
Sbjct: 15  MRLSQMLFVTLRDDPADAEIPSHKLLVRAGFIRRLGSGLYAYLPLIWRVLEKVKRIVQEE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NRTGA E  +P LQ ++LW  SGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 75  MNRTGAQECLLPQLQPSELWKMSGRWDTYTESEGIMFALRDRLERELGLGPTHEEVITAI 134

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 135 AKEMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEASLKATYGAM 194

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +Y  IF R GL   P+ A+SG IGG  S EF+VLAD GE ++  ++
Sbjct: 195 DQAYRNIFSRCGLDFRPVDADSGAIGGSGSQEFMVLADAGEDEILYTE 242



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 1/177 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P  +  +ARGIEVGHIF  GTKYS  M ATF    G++  + MG YGIG  R+  A +
Sbjct: 439 HDPTGELKTARGIEVGHIFQLGTKYSQAMGATFTNEQGEEKPLVMGCYGIGVSRLAQAAV 498

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+++ ++     D+      E+IY        DV  DD  E+ G
Sbjct: 499 EQSYDKDGIIWPTAIAPYEVVIVVPNVGDEEQMQVAEQIYTEFQAAEVDVLLDDRNERAG 558

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +F  ++L+G P +V+ G K +   ++E+  R     +++++  V+   +      +
Sbjct: 559 VKFKDSELIGIPYRVVTG-KSLKQGQLEVVKRADKSVQNLAIAAVVPTLTAWIKAEK 614


>gi|197334450|ref|YP_002155444.1| prolyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|226701355|sp|B5FBD6|SYP_VIBFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|197315940|gb|ACH65387.1| prolyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 571

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +            D+ N    D  P  K      RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHFFGVNWDRDVQLGQVEDLRNVVEGDPSPCGKGTLQLKRGIEVGHIFQLGTAYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     A+GK+  ++MG YGIG  RVVA+ IE ++D  GI+WP+++APF ++++ +  H 
Sbjct: 426 NCGVLDANGKNVILEMGCYGIGVSRVVASAIEQNNDEYGIVWPEAIAPFTVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+G P  +++G + + +   E
Sbjct: 486 SERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGDRSMDEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R    +E + +  ++ +   + S
Sbjct: 546 YKNRRANTKEAVEMANIVEHIKAQLS 571


>gi|189424968|ref|YP_001952145.1| prolyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|226701293|sp|B3E1X5|SYP_GEOLS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189421227|gb|ACD95625.1| prolyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 576

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++F+P L+E P DAE+ SH+LM+R+GMI + + GIY+++PLG +++     I+REE
Sbjct: 1   MRYTQFFIPTLKETPSDAEVVSHQLMMRSGMIRKIAAGIYTYMPLGLRSIRKFEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW+ES R+  YGKE+LR  DR D     GPTHEE++TDI R 
Sbjct: 61  MNRAGAIELLMPGVQPAELWIESKRWAQYGKELLRFKDRKDNEFCMGPTHEEIITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR +P  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    +  SY+KM+ +
Sbjct: 121 EVKSYRQMPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDVDSSAADLSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG  SHEF+VLA +GE  +          
Sbjct: 181 YNRIFERCGLNFRAVEADTGSIGGSASHEFMVLASSGEDAIVSCNACRYAA 231



 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/182 (39%), Positives = 102/182 (56%), Gaps = 4/182 (2%)

Query: 268 FDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            D  P     +    RGIEVGH+F  GTKYS  M+AT+   DGK+  + MG YGIG  R 
Sbjct: 390 GDPCPRCSGGTLEVWRGIEVGHVFKLGTKYSSSMNATYLDKDGKEQIIFMGCYGIGIGRT 449

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDD 383
           VAA IE +HD  G+IWP  +APF  S++ I A  D+    A + I+ RL   G +V  DD
Sbjct: 450 VAASIEQNHDENGVIWPLPLAPFHCSVVAINAQKDEAVMAAAQDIHDRLEAAGVEVLLDD 509

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +F   DL+G PL+++VG K +++  VE K R  G  + ++ E+ I     +  
Sbjct: 510 RDERPGVKFKDHDLIGIPLRIVVGGKNLAEGNVEFKQRAGGEMQLLAPEQAIESVIAKVR 569

Query: 444 NN 445
            +
Sbjct: 570 ES 571


>gi|158334707|ref|YP_001515879.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158304948|gb|ABW26565.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 606

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 162/449 (36%), Gaps = 57/449 (12%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + ++
Sbjct: 194 EEALRRDHRKLGKELGLFL-FSDLVGPGLPLWTPKGTLLRSQLEDFLKQEQIQRGYLGVT 252

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   ND         +  P +      I++S ++S
Sbjct: 253 TPHIARVDLFKTSGHWQKYQEDMFPLMSENDADRSSEQGFVMKPMNCPFHIQIYKSELRS 312

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    +R E     G + R R F + D++ F +TP+     + K+    L 
Sbjct: 313 YRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPDQLDDEFLKVVDLILS 371

Query: 184 IFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           +F +L LK+   R           IG D + E    A     +    + F      +   
Sbjct: 372 VFEKLQLKNFKARLSFRDPDSDKYIGSDEAWEKSQNAIRRAVETLGMEHFEGIGEAAFYG 431

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D I  + +                               R  ++G +      Y+LP
Sbjct: 432 PKLDFIFQDVLD------------------------------REWQLGTV---QVDYNLP 458

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 F G DG     + +     G++  +  ++   + G   +W   +AP ++ L+ +
Sbjct: 459 ERFDLEFMGEDGNRQRPIMIHRAPFGSLERLIGILIEEYAGVFPLW---LAPEQVRLLTV 515

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      + +   L   G  V  D  G+++G +   A+    P+  ++G K V   
Sbjct: 516 NDD---HMPFAQAVATDLQAAGIRVSVDQSGDRLGKKIRNAEKAKIPVMSVIGDKEVEAH 572

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + I+ R +G    + ++EV        S
Sbjct: 573 SLNIRTRASGELGAIPVDEVKQKLGDAIS 601


>gi|312884352|ref|ZP_07744060.1| prolyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367982|gb|EFP95526.1| prolyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 571

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 153/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPSGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E  +P +Q  +LW E+GR +  G E+LRL DR+D+  +  PT EEV+T + R+
Sbjct: 61  INNAGAVETLMPVVQPFELWEETGRSEKMGAELLRLNDRHDRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYEAMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +     
Sbjct: 181 YCRAFDRMGLNYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSSESDYAA 231



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGQGHLILKRGIEVGHIFQLGKNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVAA IE +HD  GI  PD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNTILEMGCYGIGVTRVVAAAIEQNHDKFGISLPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A E +Y  L+ +G +V +DD  E+ G  F+  +L+G P  V++G + + +   E
Sbjct: 486 SEEVQQAAENLYRELTDLGVEVLFDDRKERPGVMFSDMELIGIPHTVVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +E +++ +++ +  ++ +
Sbjct: 546 YKNRRTGEKEAIAMADILGHLKNQLA 571


>gi|228992547|ref|ZP_04152474.1| Prolyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228998595|ref|ZP_04158182.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228761063|gb|EEM10022.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228767181|gb|EEM15817.1| Prolyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 566

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMALSDVGEDTIAYSDTSDYAA 231



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ +V  +   +   +       ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEVI-ADHAVAAIVNGCCGANEEGFHYINVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAAV E  +
Sbjct: 398 GTIRFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAVAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREVGETIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R T    ++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEELHAYIANILK 566


>gi|229006095|ref|ZP_04163783.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228755171|gb|EEM04528.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock1-4]
          Length = 566

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMALSDVGEDTIAYSDTSDYAA 231



 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 119/233 (51%), Gaps = 4/233 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +A TG+ +V  +   +   +       ++     ++  +     +  +D+   +  D  P
Sbjct: 336 IAVTGDIEVI-ADHAVAAIVNGCCGANEEGFHYINVNPERDFKVSQYTDLRFIQEGDQSP 394

Query: 273 ENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +        RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAAV E
Sbjct: 395 DGNGTIRFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAVAE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             +D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G 
Sbjct: 455 QFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREVGETIYNSLQEQGYEVLLDDRAERAGV 514

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +FA ADL G P++V VG K   +  VE+K R T    ++ +EE+  Y ++   
Sbjct: 515 KFADADLFGLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEELHAYIANILK 566


>gi|281211698|gb|EFA85860.1| threonyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 730

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 156/451 (34%), Gaps = 43/451 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L + ++    A    H+ + R       H +S G   +LP G +  + +++ +R E 
Sbjct: 314 KEQLAVWKDLQHQAAQLDHRNIGRDQELFFFHPYSPGSCFFLPHGTRIYNKLHSFLRSEY 373

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + S  LW  SG + +Y   M      +  +    P +      +F   
Sbjct: 374 RKRGFEEVITPNIYSQKLWETSGHWQNYKDNMFGFQCDH-TSYSLKPMNCPGHCLMFAHK 432

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY++LP       +  R+E      G+ R R F   DA+ F    +  +    K    
Sbjct: 433 SHSYKDLPMRIADFGVLHRNETHGSLTGLTRVRRFQQDDAHIF-CRADQIREEIQKCLEF 491

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++ + G     +   + P       +    A+     V           P +     
Sbjct: 492 MQFVYDKFGFSF-SLELSTRPTPFLGDVDMWNRAEASLESVLNEFGREWRVNPGDG---- 546

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+  ++ + +   ++    F    ++      
Sbjct: 547 ----------------AFYGPKIDIHIKDANGKSHQCATIQLD----FQLPIRF----GL 582

Query: 301 TFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  AD + +  V +     G+   + A++     GK   WP  ++P +I +  +  +  
Sbjct: 583 EYTAADSRAERPVMIHRAIFGSTERMMAILIEHTKGK---WPLWLSPRQIFIAPVSVNSD 639

Query: 360 V----CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D    +  RL   G  +  D   + I  +   A  L +   V++G +   ++ 
Sbjct: 640 GSGGPYNDYLNAVKQRLFDAGYHIDSDLSDKTINKKLREAITLRYNYLVVIGKEEQDNNT 699

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + I+ R +  +  ++L++ +   +    N +
Sbjct: 700 ITIRRRDSTDQITLTLDKFLEELNDNIINFK 730


>gi|320451414|ref|YP_004203510.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320151583|gb|ADW22961.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 659

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 161/450 (35%), Gaps = 45/450 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L   +I     KG+  WLP G    + + A +REEQ R
Sbjct: 240 EYLWQLEEAKKRDHRRLGRELELF--LIDPMVGKGLVLWLPKGNVIREELMAFMREEQIR 297

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR---LADR-NDKAMIYGPTHEEVMTDIFR 119
            G   ++ P + S +L+  SG Y  Y +         +R  ++  +  P +      I+ 
Sbjct: 298 RGYQLVTTPHIGSLELYRTSGHYPYYAESQFPPISFKERGEEEEYLLKPMNCPHHIRIYA 357

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SYR LP    +    +R E      G+ R R F   DA+ F  TPE  K  +  + 
Sbjct: 358 FKKRSYRELPLRLAEFGTVYRYEKAGELLGLTRVRGFTQDDAHLF-CTPEQVKEEFLGVL 416

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L++   LGLK    R  +     D            E Q+  +          E  D
Sbjct: 417 DLVLKVLSTLGLKDYRARIGTRDPKSDKYVGDEAKWSLAERQIEEAALEAGLHYTVEEGD 476

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
                             A      +  + D+L        R  ++G I      Y+LP 
Sbjct: 477 A-----------------AFYGPKLDFVVKDALG-------REWQLGTI---QVDYNLPE 509

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG +H  V +     G++     ++     G   +W           + + 
Sbjct: 510 RFGLTYVGPDGAEHRPVMIHRAPFGSLERFIGILIEHFAGDFPLWLAP------VQVVVV 563

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   D  +++  +L + G     D   E++ ++   A++   P  ++VG +  ++  
Sbjct: 564 PVSEKQEDYAKEVVFKLKEAGLRAEADLRPERMQARIRDAEVQKVPYVLVVGDREKAEGT 623

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R  G    M L   +  A   +   
Sbjct: 624 VSVRRRHRGNLGSMPLAAFLEAALKEYKER 653


>gi|291566329|dbj|BAI88601.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 622

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 157/436 (36%), Gaps = 40/436 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y+    +   RD      +L L +  I +    G+  W P G +    +    R+   + 
Sbjct: 213 YWQQKEEAKKRDHRKLGQELDLFS--IQEDAGGGLVFWHPKGSRMRLLIEDYWRQAHLQG 270

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + +  LW  SG YD Y + M    +  +++    P +       ++SH+ S
Sbjct: 271 GYELLYTPHIANLALWKTSGHYDFYRENMFDQIEIENQSYQLKPMNCPFHVLTYQSHLHS 330

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G+MR R F   DA+ F L PE        +     +
Sbjct: 331 YRELPIRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCL-PEQVADEILGVLNLTEK 389

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P     +     LA          K +                
Sbjct: 390 ILSDFGFSKYEVNLSTRPSKSVGNDGVWQLATDALISALNIKGWDYVVDEGGG------- 442

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++++     + 
Sbjct: 443 -------------AFYGPKIDIKIQDAIARLWQCSTIQVD----FNLPERFNM----EYV 481

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG +   + +     G++     ++  ++ G   +W   +AP  + ++ +       R
Sbjct: 482 AADGSRQRPIMIHRAIFGSLERFFGILIENYAGDFPLW---LAPVMVRVLVV---SDRFR 535

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + I   L +       D+ GE++G Q    +L   P+ V++G + + +  + ++ R 
Sbjct: 536 DYAKSIVQSLKQQNIRAEVDNTGERLGKQIRACELEKIPVTVVIGQRELDNQSLSVRTRS 595

Query: 423 TGIREDMSLEEVINYA 438
            G    M+L ++    
Sbjct: 596 RGDIGTMTLPQLTEEI 611


>gi|313124186|ref|YP_004034445.1| threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280749|gb|ADQ61468.1| Threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 643

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 163/442 (36%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 228 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRIIERYIVDKEVAAGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M    D  +  M+   P +      I++ HI+SY
Sbjct: 288 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    +  +  + +     + +
Sbjct: 348 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFARTLQIIMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +H   +     R                  D   T  + + D M     S      D + 
Sbjct: 407 YHDFDINDYYFRLSYR--------------DPKNTDKYFANDEMWERSQSMLKAAMDDMG 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 453 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----ELSYIG 502

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG++H   M   G +G M    A +   + G    W   +AP +  +I +        D
Sbjct: 503 ADGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVNL--DAHSD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L   G     D   E++G +   +     P  +++G   ++   V ++   T
Sbjct: 558 YAKKVRDELVAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGT 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +   SL E ++  S   ++ 
Sbjct: 618 EEQNSESLAEFMDKLSKDVASY 639


>gi|326674558|ref|XP_002664809.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like, partial
           [Danio rerio]
          Length = 441

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 152/436 (34%), Gaps = 43/436 (9%)

Query: 12  QENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A    H+ + +       H  S G   ++P G    + +   I+ E  R G  E
Sbjct: 33  EKEQEEARRRDHRRIGKAQELFFFHDVSPGSCFFMPKGAHIYNTLTDFIKSEYRRRGFSE 92

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  PTL S  LW  SG +  Y + M  ++          P +      +F   ++S+R +
Sbjct: 93  VVTPTLFSTALWERSGHWQHYSENMFSVSSET-HTFALKPMNCPAHCVMFEQRLRSWREM 151

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +       R+E      G+ R R F   DA+ F  TPE  +            ++  
Sbjct: 152 PIRWADFGALHRNEASGTLGGLTRVRRFCQDDAHIF-CTPEQLEQEITACLDFVRSVYRV 210

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P            A+                 P +            
Sbjct: 211 FGFSFHCL-LSTRPASSMGDSALWDCAEQQLESSLKLFQERWELNPGDG----------- 258

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      +  + D+L    + +   ++    F    +++L     + GADG
Sbjct: 259 ---------AFYGPKIDILIRDALGRQHQCATIQLD----FQLPIRFNL----QYVGADG 301

Query: 308 K-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           +    + +    +G++  + A++  +  GK   WP  ++P ++ ++ +    +      +
Sbjct: 302 QMKRPIMIHRAVLGSLERMIAILAENFGGK---WPFWLSPAQVMVVPVGGSSEA---YAQ 355

Query: 367 KIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++ +RL + G     DD  G  +  +   A L  +    +VG K      V ++ R    
Sbjct: 356 QVVSRLREAGFMADIDDDHGNTLNKKIRSAQLAQYNYIFVVGEKESECGTVSVRTRAGQQ 415

Query: 426 REDMSLEEVINYASHR 441
               +LE+V+   +  
Sbjct: 416 IGQKTLEDVMKTLTQL 431


>gi|134299814|ref|YP_001113310.1| prolyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|172044305|sp|A4J5Y2|SYP_DESRM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134052514|gb|ABO50485.1| prolyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 569

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SH+L+LR G I + + G+Y++LPL Q+ L  +  IIREE
Sbjct: 1   MRVSQMLVPTLREVPAEAEVVSHQLLLRAGFIRKTASGVYTYLPLAQRVLKKLRQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +P +Q A++W+ESGR+  YG E+ RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  IDKQGGQELLMPIIQPAEMWLESGRWHVYGPELFRLKDRHDRNFCLGPTHEEVITILIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G   SY KM  +
Sbjct: 121 EVRSYKQMPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDRDEAGLDISYQKMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R G+K  P+ A+SG IGG  +HEF+VLA++GE  +    D     
Sbjct: 181 YTSIFSRCGVKFRPVEADSGAIGGSSTHEFMVLAESGEAAILYCSDCDYAA 231



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 100/161 (62%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG IF  GTKYS  + ATF   +GK+  + MG YGIG  R +AA IE ++D  GII
Sbjct: 404 RGIEVGQIFKLGTKYSKALGATFLDENGKEQPIVMGCYGIGVSRTMAAAIEQNYDKDGII 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+AP++  +I +   D       E++Y  L++ G +   DD  E+ G +F  ADL+G
Sbjct: 464 WPASIAPYQAIVIPVAPKDDNQMKIAEELYKALNQAGVETILDDRSERPGVKFKDADLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +PL+++VG+K V++  VEI+ R +G  + +S+++ +     
Sbjct: 524 YPLRIVVGNKAVTEGVVEIRQRRSGQTDLVSVKDSVPKILE 564


>gi|332705120|ref|ZP_08425202.1| prolyl-tRNA synthetase, family II [Lyngbya majuscula 3L]
 gi|332356070|gb|EGJ35528.1| prolyl-tRNA synthetase, family II [Lyngbya majuscula 3L]
          Length = 603

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/228 (49%), Positives = 151/228 (66%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+E+P +AEI SHKL+LR G I +   GIY++LP+  + L  V+ I+REE
Sbjct: 1   MRLSQMLLVTLREDPVEAEIPSHKLLLRAGYIRRIGSGIYAYLPMMWRVLKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALIDRQKRELGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTDHESLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +Y  +F R GL+   + A+SG IGG  S EF+VLAD GE ++  ++
Sbjct: 181 DQAYRNMFSRSGLEFRAVEADSGAIGGSGSQEFMVLADAGEDEILYTE 228



 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 1/173 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     SARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  A +
Sbjct: 425 HDPNQTLKSARGIEVGHIFQLGTKYSSAMGATYTSEQGEEIPLCMGCYGVGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+ + +      D     A EK+Y +L++ G +   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYHVIITIPNVGDTQQMAAAEKLYTQLNEAGIETLLDDRNERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +F  ADL+G P +++ G + + D KVE+  R T    ++SLEEV+       
Sbjct: 545 VKFKDADLIGIPYRIVTG-RSLKDGKVEVVERATHKSTELSLEEVLPTLKQWI 596


>gi|296314467|ref|ZP_06864408.1| proline--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838764|gb|EFH22702.1| proline--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 570

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTAYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +RA+ G  GG        L   G T    +    +          +D            A
Sbjct: 325 IRAQFGANGGS-------LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDA 377

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D+ N    D  P  + +   ARGIEVGH+F    KY+  M+ +F   +GK   +
Sbjct: 378 AEPEFVDLRNVIEGDISPDEQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIM 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +KIYA 
Sbjct: 438 EMGCYGIGITRVVAAAIEQNNDEKGIIWTKTMAPFEVVIVPMNYKKSDAVREATDKIYAE 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     + +++
Sbjct: 498 LLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEVQAVAI 557

Query: 432 EEVINYASHRFS 443
            E++   +   +
Sbjct: 558 GEIVARVTASLN 569


>gi|221633051|ref|YP_002522276.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221156502|gb|ACM05629.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 596

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 158/444 (35%), Gaps = 43/444 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R          + G+  WLP G K L+ +    R+E  +
Sbjct: 183 YLHRLEE----AERRDHRRLGRELELFHFDPTAPGMPYWLPKGLKILNLLLDFWRQEHEK 238

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P +    LW  SG +D Y + M  +           P +      ++    +
Sbjct: 239 RGYQEIAAPLINDKSLWEVSGHWDHYRENMFLIQLDEHLTYGVKPMNCPNAMIVYNLKKR 298

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP       +  R E      G++R R+F   DA+ F +T +  +  + ++     
Sbjct: 299 SYRDLPLRLSDCDILHRYERSGTLHGLLRVRKFQQDDAHIF-VTEDQIEEEFARILEIAQ 357

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   GL+   +R  + P       E    A+    ++                   D 
Sbjct: 358 LFYGIFGLRY-TLRLGTRPADFMGDPETWDKAEAALQRIL------------------DR 398

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +            A      +  + D+L    +     ++    F    ++      T+
Sbjct: 399 HAGPGNYLIGEGEGAFYGPKIDILMEDALGRQWQTGTIQLD----FQLPRRF----GCTY 450

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG +   V +     G++     ++     G   +W   +AP + ++I I       
Sbjct: 451 TDRDGTEKTPVVIHRVIYGSLERFIGILIEHFAGAFPVW---LAPVQATIIPIA---DRH 504

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++  RL   G  V  DD  E++ ++   A L   P  ++VG + V++  + ++ R
Sbjct: 505 LPYAYRVRDRLRDAGLRVEVDDGDERMQAKIRSAQLQKIPYMLVVGDREVNEESLAVRLR 564

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS+E  I       +  
Sbjct: 565 TNENIGSMSIERFITMVQRLVAEK 588


>gi|330443967|ref|YP_004376953.1| threonyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807077|gb|AEB41250.1| threonyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 635

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 166/450 (36%), Gaps = 47/450 (10%)

Query: 1   MRRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           M+  K  L  L+E   RD  +   KL L +    +++ G+  + P G    D +    +E
Sbjct: 220 MQELKEHLHQLEEAKKRDHRVLGVKLDLFSQ--QEYAAGMPFFHPRGMIIWDALINFWKE 277

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              R G  ++  P L +  LW  SG + +Y + M  L   +++     P +       ++
Sbjct: 278 LHARAGYQQIKTPQLMNQRLWEISGHWQNYKENMYTLT-LDEENYAIKPMNCPGCMLYYK 336

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +H+ SY+  P    +I    R E+     G+MR R F   DA+ F LTPE  +     + 
Sbjct: 337 THLHSYKEFPLRVAEIGHVHRHEVSGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNIL 395

Query: 179 VSYLRIFHRLGLKS---IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
               +++H  GL     +  R ++G IG D   E    A     +   S   +     + 
Sbjct: 396 DLVAKLYHTFGLAYHLELSTRPKTGTIGSDELWEHATSALQRALEKSGSSFIITPEEGAF 455

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                DI   ++I                               R  + G I        
Sbjct: 456 YGPKIDIHVKDAI------------------------------NRTWQCGTI-QLDMFLP 484

Query: 296 LPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  A+ GK   V +     G++     ++     GK  +W   ++P ++ LI +
Sbjct: 485 ERFHLEYTNAEGGKSIPVMLHRALFGSIERFLGILIEHFKGKFPLW---ISPEQVRLITV 541

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                       ++  +   +G  V  DD  E +  +   A  +     V +G + V+++
Sbjct: 542 A---DRHIPRARELAQKWQNLGLVVTVDDASESVSKKIRNAQTMQVNYMVTLGDQEVANN 598

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + I+ R   +  D+S E+ +N      ++
Sbjct: 599 TLAIRTRDNRVINDVSEEKFLNAILEEKNS 628


>gi|317153730|ref|YP_004121778.1| threonyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943981|gb|ADU63032.1| threonyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 645

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 155/442 (35%), Gaps = 45/442 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L +        G+  W P G      +    R+E
Sbjct: 225 KALKKHLDRLEEARKRDHRKLGVQLDLFSTH-EDVGGGMILWHPKGGLIRTILEDFERKE 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +   +LW +SG YD+Y + M    + ++++    P +      IF+ 
Sbjct: 284 HLKRGYQIVQGPLILKRELWEKSGHYDNYRENMY-FTEIDEQSYGIKPMNCLSHMLIFKR 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I+SYR+LP  ++++ +  R E      G+MR R F   DA+     P+  +     +F 
Sbjct: 343 KIQSYRDLPQRYFELGVVHRHEKSGVLHGLMRVRSFTQDDAHLI-CRPDQLQTEIIGVFN 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I    G +       + P     +     LA         +          +   +
Sbjct: 402 FVRDIMGLFGFEF-EAEISTRPEKSVGTDADWELATAALKDALDALGKPYTVNEGDGAFY 460

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I +                             +    R  +   I      ++LP  
Sbjct: 461 GPKIDI---------------------------ILRDSLDRRWQCATI---QCDFTLPDR 490

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG+ H  V +    +G++     V+     G   +W   +AP +  L+N+  
Sbjct: 491 FDLVYVGEDGERHRPVMLHRVILGSIERFIGVLIEHFAGALPVW---LAPVQARLLNVT- 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  EK  A L+  G  V  D   E++G +   A +   P  ++VG K V    V
Sbjct: 547 --DAQGEFTEKARAYLAGRGIRVEADTRNEKLGYKVREAQVEKIPYMLVVGDKEVEAGCV 604

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            I+ R       ++LEE     
Sbjct: 605 NIRSRDGDDPGLVTLEEAAQLI 626


>gi|104774352|ref|YP_619332.1| threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423433|emb|CAI98306.1| Threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 643

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 162/442 (36%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 228 DLKRRAEIKERDHRTIGRDLDLFFVDPKAGAGLPYWMPKGATIRRIIERYIVDKEVAAGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M    D  +  M+   P +      I++ HI+SY
Sbjct: 288 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    +  +  + +     + +
Sbjct: 348 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFARTLQIIMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +H   +     R                  D   T  + + D M     S      D + 
Sbjct: 407 YHDFDINDYYFRLSYR--------------DPKNTDKYFANDEMWERSQSMLKAAMDDMG 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 453 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----ELSYIG 502

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG++H   M   G +G M    A +   + G    W   +AP +  +I +        D
Sbjct: 503 ADGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVNL--DAHSD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L   G     D   E++G +   +     P  +++G   ++   V ++   T
Sbjct: 558 YAKKVRDELVAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGT 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +   SL E +   S   +N 
Sbjct: 618 EEQNSESLAEFMGKLSKDVANY 639


>gi|71892130|ref|YP_277862.1| threonyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796236|gb|AAZ40987.1| threonyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 408

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 152/436 (34%), Gaps = 44/436 (10%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              D    + +L L      + + G+  W   G   L  +  IIR +       E+  PT
Sbjct: 6   KKNDHRNLAKQLHLY--HTQKDAPGMVFWHQNGWILLQELKKIIRTQLKEYKYQEVKSPT 63

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW ++G +D+Y + +   +  +       P +      IF   IKSY++LP+   
Sbjct: 64  MINHTLWKKTGHWDNYHEHIFTTSSES-HEYCIKPMNCPGHIQIFNQGIKSYKDLPYRIA 122

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR+REF   D + F  T        N        I++  G K+
Sbjct: 123 EFGNCHRNEPSGSLHGLMRTREFTQDDGHIF-CTKTQIFDELNHCIKMMYDIYNTFGFKT 181

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + P     +      A+   + V    +      P++   +   I    +    
Sbjct: 182 ILVKLSTRPAKRIGTDSIWDTAEQHLSTVLQHNNISFQYQPNDGAFYGPKIEFALLD--- 238

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKD- 309
                                      R  + G I      +SLP  ++A +        
Sbjct: 239 ------------------------SLDRTWQCGTI---QLDFSLPNLLNARYIDRHNSRV 271

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G+M     +I   + G    W   +AP ++ L+N+        +    I 
Sbjct: 272 VPVMIHRAILGSMERFIGLITEEYAGFFPTW---LAPTQVVLMNVTDQ---QSEYVSVIE 325

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L         D   E+IG +     L   P  +I G+K ++ + V I+       ++ 
Sbjct: 326 KKLINKKIRTKVDLRNEKIGFKIRYYTLQRIPYMLICGNKEMNQNTVAIRTYRGQTLKNC 385

Query: 430 SLEEVINYASHRFSNN 445
           +++  I       ++ 
Sbjct: 386 NIDIFIKKLLCEINSY 401


>gi|284051766|ref|ZP_06381976.1| prolyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 601

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 112/226 (49%), Positives = 148/226 (65%), Gaps = 3/226 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + +  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEDSLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLY 226



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     SARGIEVGHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +
Sbjct: 426 HDPSQTLESARGIEVGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAV 485

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S++  GIIWP ++AP+ + +      D       +++Y++L++ G +   DD  E+ G
Sbjct: 486 EQSYNKDGIIWPVAIAPYHVIITVPNVSDNQQMAIAQQLYSQLNQAGVETLLDDRNERAG 545

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S +
Sbjct: 546 VKFKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKISQS 600


>gi|209525764|ref|ZP_03274300.1| prolyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209493737|gb|EDZ94056.1| prolyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 601

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 112/226 (49%), Positives = 148/226 (65%), Gaps = 3/226 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + +  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEDSLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLY 226



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     SARGIE+GHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +
Sbjct: 426 HDPSQTLESARGIEIGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAV 485

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+ + +      D       +++Y++L++ G +   DD  E+ G
Sbjct: 486 EQSYDKDGIIWPVAIAPYHVIITVPNVSDNQQMAIAQQLYSQLNQAGVETLLDDRNERAG 545

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S +
Sbjct: 546 VKFKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKISQS 600


>gi|207344345|gb|EDZ71519.1| YIL078Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 689

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 161/439 (36%), Gaps = 41/439 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + +     + ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 278 AEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVITP 337

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 338 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKSRERSYRELPWRV 396

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +     +F     I+   G +
Sbjct: 397 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTHDQIESEIENIFNFLQYIYGVFGFE 455

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A++                  +                
Sbjct: 456 F-KMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDG--------------- 499

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L   +  + ++  +  
Sbjct: 500 -----AFYGPKIDIMISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYERP 550

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++     GK   WP  ++P ++ ++ +    Q      E +  +
Sbjct: 551 VMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVKYQG---YAEDVRNK 604

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---- 427
           L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++    
Sbjct: 605 LHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNA 664

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S+EEV+    +     R
Sbjct: 665 TVSVEEVLKQLRNLKDEKR 683


>gi|330445168|ref|ZP_08308820.1| prolyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489359|dbj|GAA03317.1| prolyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 571

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAFS 224



 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 117/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DDKHHVGINWGRDVELGRVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGTTYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +     ++GK+  ++MG YGIG  RVVA+ IE ++D  GIIWPD++APF++S++ +    
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVASAIEQNNDENGIIWPDAIAPFQVSIVPMNMAK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G DV +DD  E+ G  FA  +L+G P  +++G++ + + ++E
Sbjct: 486 SEEVKEAAEKLYAELTAAGIDVLFDDRKERPGVMFADHELIGIPHTIVIGNRSLENGEME 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++ +V+ +   + +
Sbjct: 546 YKNRRAGTKEAVAVNDVVEFLKQKLA 571


>gi|218248302|ref|YP_002373673.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|226699137|sp|B7K1H5|SYP_CYAP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218168780|gb|ACK67517.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 598

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ A+LW ESGR+++Y K    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPAELWRESGRWETYTKAEGIMFSLIDRRDTELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + +  K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHASEDSLKETYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  +  R GL+   ++A+SG IGG  S EF++LA+ GE +V  ++D     
Sbjct: 181 DQAYRNMITRCGLEFRAVQADSGAIGGSASQEFMILAEAGEDEVLYTEDGKYAA 234



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIEVGHIF  G KYS  M ATF    G++  + MG YG+G  R+  A +
Sbjct: 425 HDPIQTLQTARGIEVGHIFQLGVKYSQAMGATFTNEQGEEKPLIMGCYGVGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+   ++    +D    +  EK+Y  L+KVG +   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYHAVVVIPNINDAQQVEVAEKLYTELNKVGVETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F  A+L+G P +++ G + +   KVE+  R T   +++++++V+       +
Sbjct: 545 VKFKDAELIGIPYRIVTG-RSLQSGKVELVERSTKNSQEIAIDQVVETLKKLIN 597


>gi|168012416|ref|XP_001758898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690035|gb|EDQ76404.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 613

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 158/442 (35%), Gaps = 42/442 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIRE 59
           S+  L   Q    +A+   H+ +   L    I +    G+  W P G      +    ++
Sbjct: 199 SEEQLKAYQVQKEEAKRRDHRRLGQDLNLFSIQEDAGGGLVFWHPKGSMVRHIIEDYWKK 258

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G   +  P +   DLW  SG Y+ Y + M       ++     P +      +++
Sbjct: 259 MHFANGYELLYTPHIAKLDLWKTSGHYEFYKENMFDQMRIEEELYQIRPMNCPFHIQVYK 318

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR LP    ++   +R E      G+ R R F   D + F L P+  +     + 
Sbjct: 319 DSLRSYRELPMRVAELGTVYRYERSGALHGLFRVRGFTQDDGHIFCL-PDQIRDEIRGVL 377

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                +  + G     +   + P     SHE    + T   +    K +           
Sbjct: 378 DLTEIVLKQFGFTKFEINLSTKPEKAVGSHEIWEKSTTALREALQDKGWEYSIDEGGG-- 435

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + K+ D++    + S   ++    F    ++++  
Sbjct: 436 ------------------AFYGPKIDVKIEDAIGRKWQCSTIQVD----FNLPERFNM-- 471

Query: 299 SATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   D  +   + +    +G++     ++  ++ G   +W   +AP +  L+ +  H
Sbjct: 472 --VYVDTDTSRKQPILIHRAILGSIERFFGILVENYAGDFPLW---LAPVQARLLPVTDH 526

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +    D C+ + A+L + G        GE++G     A+    P+  +VG K V  + + 
Sbjct: 527 E---VDYCKNVVAKLREKGIRAEVVF-GERLGKLIRNAETQKIPVMAVVGPKEVESATLT 582

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R  G    +SL+++ +   
Sbjct: 583 VRTRHGGELGTLSLDDLTHKIQ 604


>gi|50555740|ref|XP_505278.1| YALI0F11231p [Yarrowia lipolytica]
 gi|49651148|emb|CAG78085.1| YALI0F11231p [Yarrowia lipolytica]
          Length = 755

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 161/447 (36%), Gaps = 49/447 (10%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A    H+ + R     + +  S G   WLP G +    +  ++R+E  + G  E+  P 
Sbjct: 336 EAAKRDHRKIGREQELFLFNDMSPGSCFWLPHGARIYSALTDLLRKEYRKRGYEEVITPN 395

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + ++ LW  SG + +Y  +M    +   +     P +      +F++  +SY+ LP+   
Sbjct: 396 MYNSKLWETSGHWQNYKDDMFTF-EIEKEKFGLKPMNCPGHCLMFKARDRSYKELPWRVA 454

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E      G+ R R F   DA+ F + P   +     +F    +I+   G + 
Sbjct: 455 DFGVIHRNEASGALTGLTRVRRFQQDDAHIFCM-PSQIQSEITGIFDFLKKIYTIFGFEF 513

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             M+  + P       E    A+    +            P +                 
Sbjct: 514 -KMKLSTRPDKYVGEIETWNDAEKQLEEALNKWGANWELNPGDG---------------- 556

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--- 309
               A      +  + D+L    + +   ++    F    ++ L    +    +G+    
Sbjct: 557 ----AFYGPKIDIVISDALHRWHQCATIQLD----FQLPNRFDLNFKNSAAMGEGEADSA 608

Query: 310 ----HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                 V +     G+   + A++     GK   WP  ++P ++ +I +        D  
Sbjct: 609 ALYTRPVMIHRAIYGSFERMTAILCEHFAGK---WPFWLSPRQVLVIPVGPK---YNDYA 662

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++   L   G     D+    +  +   A L  +    IVG +  +   V I+ R    
Sbjct: 663 QEVRDELVDAGFFADVDNGPNTLQKKVREAQLKQYNFTFIVGEEEKTAKSVNIRDRDDQS 722

Query: 426 RE----DMSLEEVINYASHRFSNNRPV 448
           ++     + L+EVI+   H+  +++ +
Sbjct: 723 KQAKAASIPLDEVISRL-HKLKDSKAL 748


>gi|242278821|ref|YP_002990950.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259516380|sp|C6BRH1|SYT_DESAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|242121715|gb|ACS79411.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 642

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K+   I +   RD      +L L + +  +   G+  W P G      +    R+E  + 
Sbjct: 227 KHLAQIEEAKKRDHRKLGTQLDLFS-VNPEVGAGMTIWHPKGALIRAILEDFERKEHLKR 285

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   +LW +SG YD+Y + M    + ++++    P +      +F+S ++S
Sbjct: 286 GYQFVQGPLILKRELWEKSGHYDNYRENMY-FTEIDEQSYGIKPMNCLSHMLVFKSRLRS 344

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +++  +  R E      G++R R F   DA+     P+  +     +      
Sbjct: 345 YRDLPQRYFEHGVVHRHEKSGVLHGLLRVRTFTQDDAHLI-CRPDQLRDEIIGVAKFVGD 403

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G +       + P     S E    A                    +   +   I
Sbjct: 404 VMGLFGFEY-EAEVSTKPEKAIGSDEDWDRATEALEGALKEMGMEYSINEGDGAFYGPKI 462

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
            +                             K    R  +   I      ++LP     +
Sbjct: 463 DI---------------------------IIKDALERRWQCATI---QCDFTLPERFDLS 492

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +    +G++     V+     G    W   ++P +  ++ +      
Sbjct: 493 YVGEDGERHRPVMLHRVILGSIERFIGVLLEHTGGALPAW---LSPVQAKILTVT---DS 546

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+   L + G     DD  E++G +   A L   P  +++G K V+   V ++ 
Sbjct: 547 QNEFAQKVLQFLREKGIRAEVDDRNEKLGYKVREAQLEKIPYMLVIGDKEVAAESVNVRA 606

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R        SLEE     S     
Sbjct: 607 RDGEDPGLKSLEEAAELISTAIDE 630


>gi|218961058|ref|YP_001740833.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167729715|emb|CAO80627.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 633

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 89/439 (20%), Positives = 146/439 (33%), Gaps = 39/439 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD       L L + +  +   G+  W P G      +    +E+  + G
Sbjct: 231 YLHFLEEASKRDHRKLGKDLELFS-ISDEVGPGLVLWHPKGAMVRHLIETYWKEQHLKKG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  A+LW  SG  D Y + M    D   +     P +      I+ S + SY
Sbjct: 290 YQLVYTPHLGRANLWETSGHLDFYKENMYSKMDIEGQDYYIKPMNCPFHISIYNSSLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++   +R E      G+MR R F   DA+    TPE      +K+ V  L +
Sbjct: 350 RELPIRLAELGTVYRYERSGVLHGLMRVRGFTQDDAHII-CTPEQMDMEVDKLIVFSLDM 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G K   +   + P       E    A                              
Sbjct: 409 LKAFGFKEFLIYLATKPDDCVGEKEDWDKATASLANSLQKLGLEYKVDEGGG-------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D+L    + +    +                 T+ G
Sbjct: 461 ------------AFYGPKIDIKIKDALGRAWQCTTIQFDFNEPER--------FDMTYIG 500

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           AD   H    +    +G++    A +   H G   +W   +AP +I LI I        +
Sbjct: 501 ADNSAHRPYMIHRAVLGSVERFFATLLEYHSGNLPLW---LAPVQIMLIPIT---DAQLN 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              KI  +L + G     D   E++G +   A+    P   I+G    ++++V ++    
Sbjct: 555 YARKIEEQLLEQGFRCELDSRSEKMGYKIRSAEKNKIPFMCILGKNEENNNQVTLRQHTV 614

Query: 424 GIREDMSLEEVINYASHRF 442
           G    M+LE  I       
Sbjct: 615 GDLGAMNLEAAIAILRKEL 633


>gi|182420015|ref|ZP_02951249.1| prolyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237666786|ref|ZP_04526771.1| proline--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376052|gb|EDT73639.1| prolyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657985|gb|EEP55540.1| proline--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 570

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + GIY+++PLG K L NV  I+REE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMAAGIYNYMPLGLKVLKNVEDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW ESGR+D+YG EM R+ DR  +    GPTHEEV TDI R+
Sbjct: 61  MNAAGAQEFLASAMIPAELWQESGRWDAYGAEMFRVKDRGARDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G    +NKM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDKDQDGLDIVFNKMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  V    +     
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDVVFCSECNYAA 231



 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/182 (40%), Positives = 100/182 (54%), Gaps = 2/182 (1%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E             ARG EVGHIF  GTKYS  M+A F   DGK+    MG YGIG  R
Sbjct: 386 TEGEKCPCCGAPINIARGTEVGHIFKLGTKYSDAMNANFIDEDGKEKPFVMGCYGIGVTR 445

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +A++IE  HD  GIIWP SVAP+ IS+I +   D+       ++Y +L  +G +V  DD
Sbjct: 446 TMASIIEQHHDENGIIWPLSVAPYHISVIPVNVKDEEQVKIATELYDQLFSMGVEVLLDD 505

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +F  ++L+G P++V VG K ++D +VE K R  G  E + + +V N     F 
Sbjct: 506 RNERAGVKFKDSELMGIPMRVTVGKK-ITDGEVEFKLRD-GDMEVIKISDVCNIVKGEFE 563

Query: 444 NN 445
            N
Sbjct: 564 KN 565


>gi|269925242|ref|YP_003321865.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788902|gb|ACZ41043.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 596

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 152/445 (34%), Gaps = 37/445 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD       L L   MI  +   G+  WLP G      +   I + + R 
Sbjct: 185 YLWRLEEAKRRDHRKIGRDLELF--MISDEVGPGLVLWLPNGSIIRRELENFIVKAEARE 242

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIK 123
           G   +  P +    L+  SG +  Y   M       + +     P        I++  ++
Sbjct: 243 GYQHVYTPHIAKLGLYKTSGHWQHYRDAMFPPMVLEDGEEYELRPMTCPHHIMIYKHSLR 302

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++   +R E      G+ R R F + DA+ F   P+  K  + ++     
Sbjct: 303 SYRDLPLRIAELGTVYRYEKSGELTGMSRVRGFTINDAHIF-CRPDQLKEEFIRVIQLMH 361

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  +G      R                  D  + + +   D M     +      D 
Sbjct: 362 EVYRAVGFHDYVYRLSLR--------------DPSDKEKYVEGDEMWNNAENAIRQALDE 407

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +  + +        A      +  + D L      S   ++    FY   ++       +
Sbjct: 408 LGADYVEA--EGEAAFYGPKLDVMVRDVLGREFAASTNQLD----FYLPERF----DLEY 457

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG +   V +    IG+M    A +   H G   +W   ++P ++ +I I       
Sbjct: 458 IDADGERRRPVMIHRAPIGSMERFFAFLTEQHAGAFPVW---LSPVQVVVIPIA---DRH 511

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++ +  S+    V  D   E++ ++   A +   P  +IVG +      V ++ R
Sbjct: 512 IPYAEEVASAFSRHNVRVNVDARNERMNAKIRDAQMQKIPYMLIVGDREAQAGTVAVRKR 571

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                +   +++V+          +
Sbjct: 572 SGEDLKGQPVQDVVQMVLDDIREYK 596


>gi|257060371|ref|YP_003138259.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256590537|gb|ACV01424.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 598

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ A+LW ESGR+++Y K    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPAELWRESGRWETYTKAEGIMFSLIDRRDTELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + +  K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHASEDSLKETYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  +  R GL+   ++A+SG IGG  S EF++LA+ GE +V  ++D     
Sbjct: 181 DQAYRNMITRCGLEFRAVQADSGAIGGSASQEFMILAEAGEDEVLYTEDGKYAA 234



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIEVGHIF  G KYS  M ATF    G++  + MG YG+G  R+  A +
Sbjct: 425 HDPIQTLQTARGIEVGHIFQLGVKYSQAMGATFTNEQGEEKPLIMGCYGVGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+   ++    +D    +  EK+Y  L+KVG +   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYHAVVVIPNINDAQQVEVAEKLYTELNKVGVETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F  A+L+G P +++ G + +   KVE+  R T   +++++++V+       +
Sbjct: 545 VKFKDAELIGIPYRIVTG-RSLQSGKVELVERSTKNSQEIAIDQVVETLKKLIN 597


>gi|154249412|ref|YP_001410237.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154153348|gb|ABS60580.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 638

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 144/445 (32%), Gaps = 47/445 (10%)

Query: 7   FLPILQENPRDAEIASHKLM---LRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L +L+E    A    H+ +   L    I    + G+  +LP G   L  + ++ RE   
Sbjct: 232 YLKMLEE----ARKRDHRRLGPQLELFFINTDVAAGMPIFLPYGMTVLKELMSLSRELHK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P +    LW +SG +D Y   M    ++ +      P +      I+++  
Sbjct: 288 KYGYKEVGTPLIMHEKLWRQSGHWDHYKNNMY-FTEKEEVTYAVKPMNCPGHILIYKNKP 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY++LP   ++     R E      G++R R F   DA+ F    +        +    
Sbjct: 347 VSYKDLPIRLFEFGRVHRYERGGVLHGLLRVRTFTQDDAHIF-CREDQIVDEVTNVVRFI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G         + P            A  G                 E      
Sbjct: 406 NELYGIFGFSYRAT-LSTMPEDHMGDEATWEKATEGLRNALEEMKVPYEVAEGEG----- 459

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + D L    + +   ++    F    ++      T
Sbjct: 460 ---------------AFYGPKIDFHVRDVLGREWQCATIQMD----FQMPERF----DLT 496

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +K +DG +   V +     G++     ++   + G    W   +AP +  +I +    + 
Sbjct: 497 YKDSDGNERRPVMIHRALYGSIERFFGILIEHYAGAFPTW---LAPVQAVVIPV---SEK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + IY  L +    V  DD  E +  +     +   P  +IVG K      + ++ 
Sbjct: 551 FSEYAKNIYQTLDENDIRVELDDRNETLSYRIRENQMRKVPYMIIVGEKEKESETISVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + + + I    +     
Sbjct: 611 REGKDTHGIKINDFIETVLNEIRKR 635


>gi|24657723|gb|AAH39225.1| Threonyl-tRNA synthetase-like 2 [Mus musculus]
          Length = 790

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 159/450 (35%), Gaps = 46/450 (10%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +  I +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 373 KMMKDWEKIQEEAKSRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNALMDFIREE 430

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y   M    D         P +      +F  
Sbjct: 431 YHKRNFTEVLSPNMYNSKLWETSGHWQHYSNNMFTF-DVEKDTFALKPMNCPGHCLMFAH 489

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F +  E  +        
Sbjct: 490 RPRSWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCM-VEQIEEEIKGCLH 548

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     +   + P       E    A+                 P +    
Sbjct: 549 FLQSVYSTFGFSF-QLNLSTRPEHFLGEIEIWDEAERQLQNSLVEFGKPWKINPGDG--- 604

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    + +   ++    F    +++L   
Sbjct: 605 -----------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL--- 640

Query: 300 ATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG  K+  V +    +G++  + A++  ++ GK   WP  ++P ++ +I +   
Sbjct: 641 -TYVSKDGDDKNRPVIIHRAILGSVERMIAILSENYGGK---WPLWLSPRQVMVIPVGP- 695

Query: 358 DQVCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              C +   ++     + G   DV  DD    +  +   A L  +   ++VG K   ++ 
Sbjct: 696 --ACENYALQVSKECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKINNA 752

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R   I  ++S+  VI    +   + 
Sbjct: 753 VNVRTRDNKIHGEISIASVIEKLKNLKKSR 782


>gi|262165127|ref|ZP_06032864.1| prolyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262172111|ref|ZP_06039789.1| prolyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|261893187|gb|EEY39173.1| prolyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|262024843|gb|EEY43511.1| prolyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 571

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVFS 224



 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSAKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  VI+G + + +   E
Sbjct: 486 SERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTVIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 546 YKNRRNGEKEAVAMESIIDFIQAKLA 571


>gi|281203096|gb|EFA77297.1| threonyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 716

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 168/439 (38%), Gaps = 39/439 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L   Q   ++A +  H+ + +       H +S G   +LP G +  + +   IR E 
Sbjct: 306 KKQLEEYQNFMKEAALRDHRNVGKNQELFFFHPYSPGCAFFLPHGTRIYNRLVEFIRHEY 365

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  PT+ S  LW ESG +  YG+ M  L   +D+     P +      +F + 
Sbjct: 366 HRRGFTEVITPTMFSQQLWEESGHWAKYGENMFNLK-CDDQNYSLKPMNCPSHCLMFGNR 424

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP  F    +  R+EL     G+ R R+F   DA+ F  TP+  +   +     
Sbjct: 425 SRSYRELPIRFADFGVLHRNELAGALTGLTRVRKFQQDDAHIF-CTPDMVEQEISSCLEF 483

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P     +     +A+                 P +     
Sbjct: 484 MQHVYGIFGFEF-QLELSTRPDNHLGTAAQWDVAENSLRDALNKFGKPWKLNPGDG---- 538

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + ++FD L    + +   ++    F    ++ L    
Sbjct: 539 ----------------AFYGPKIDIQIFDVLKRAHQCATIQLD----FQLPIRFELEYMG 578

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G + +   V +    +G++  + A++     GK   WP  V+P ++ +  +    + 
Sbjct: 579 S--GPEERHRPVIIHRAILGSVERMMAILIEHTAGK---WPFWVSPRQVLVATV---SEK 630

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +   L+  G     D   + +  +   A L  +   ++VG + ++++ V ++ 
Sbjct: 631 FADYAKSVTKTLTDAGFYADVDLSDKTLPKKVREAQLSQYNYILVVGEEELNNNTVNVRT 690

Query: 421 RLTGIREDMSLEEVINYAS 439
           R   +R  ++++ +I    
Sbjct: 691 RDNVVRGSITVDALIEEFK 709


>gi|258625204|ref|ZP_05720117.1| prolyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258582494|gb|EEW07330.1| prolyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 571

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVFS 224



 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSAKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNAILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  VI+G + + +   E
Sbjct: 486 SERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTVIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 546 YKNRRNGEKEAVAMESIIDFIQAKLA 571


>gi|257453930|ref|ZP_05619207.1| prolyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257448702|gb|EEV23668.1| prolyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 586

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LMLR GMI + + G+Y+WLP+G K L  V  IIREE
Sbjct: 1   MRASQFTFATLKETPSDADIISSQLMLRAGMIRKSASGLYTWLPMGLKTLQKVKKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+ +P +QSA+LW ESGR+++YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MDAINCQELLMPVVQSAELWQESGRWEAYGPELLRFKDRHQRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP ++YQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 LLKSYKQLPVSYYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHIDQPSLQRTYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +  S 
Sbjct: 181 YHNIFTRLGLDFRAVQADTGSIGGFASHEFQVLAGSGEDDIVFSD 225



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 24/234 (10%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGH 286
           DF   +   DF        +  +  A     +D+ N    D  P+ +      RGIEVGH
Sbjct: 358 DFVSGANKPDFH----TTGVNWERDASITEIADIRNVVEGDPSPDGQGTLQIRRGIEVGH 413

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP----- 341
           IF  G KY+  ++    G  GK     MG YGIG  R+VAA IE +HD  GIIW      
Sbjct: 414 IFQLGDKYAKALNCAVMGEQGKPVITMMGCYGIGVTRIVAAAIEQNHDDNGIIWKTSSTG 473

Query: 342 DSVAPFKISLINI---KAHD---QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +S+APF ++++ +   K  D          E +Y  L   G DV  DD  E+ G +FA  
Sbjct: 474 ESLAPFTVAIVPMIKGKMKDAATDKAMQLAEALYTELKAQGVDVLLDDRDERAGVKFADL 533

Query: 396 DLLGFPLQVIVGSKFV-SDSKV--EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +L+G P ++++  K +    +V  E  +R  G ++ ++  ++    +  F +N+
Sbjct: 534 ELIGIPHRIVISEKNISETGEVKYEYVNRQDGEKQLLTAAQL----NQLFKDNQ 583


>gi|16552114|dbj|BAB71241.1| unnamed protein product [Homo sapiens]
          Length = 707

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 154/437 (35%), Gaps = 44/437 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 296 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 355

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 356 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 414

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 415 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 473

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 474 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 521

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 522 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 564

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 565 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 618

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   
Sbjct: 619 LQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNK 678

Query: 425 IREDMSLEEVINYASHR 441
           I  ++ +   I+   + 
Sbjct: 679 IHGEILVTSAIDKLKNL 695


>gi|148652560|ref|YP_001279653.1| prolyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048509|sp|A5WDG2|SYP_PSYWF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148571644|gb|ABQ93703.1| prolyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 576

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 113/225 (50%), Positives = 154/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LMLR G+I + + G+Y WLP+G K L  V  I+REE
Sbjct: 1   MRASQFLFATLKETPSDADIVSSQLMLRAGLIRKLASGLYVWLPMGLKVLQKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P  Q A+LW ESGR++ YG E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MQNIGGQEVLMPMTQPAELWQESGRFEDYGPELLRFTDRHNRDFVLGPTHEEVITDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFG+MR+REF MKDAYSF +     + +Y +M+ +
Sbjct: 121 ELRSYKQLPVTFFQIQGKFRDEIRPRFGIMRAREFTMKDAYSFHVDQASLEVTYQQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    + A++G IGG  SHEF VLA +GE  +  S 
Sbjct: 181 YTRIFQRLGLNFRAVLADTGSIGGSASHEFHVLAGSGEDAIAFSD 225



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 8/205 (3%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
           +    +  +  A      D+ N    D+ P+ K      RGIEVGHIF  G KYS  ++ 
Sbjct: 371 MHTTGMNWERDATITDVVDIRNVVEGDASPDGKGTLSIKRGIEVGHIFQLGDKYSKALNC 430

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINI 354
           T  G DGK   + MG YGIG  R++AA IE +HD  GIIW       DS+APF I+++ +
Sbjct: 431 TVMGEDGKPVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAKTPDIKDSIAPFDIAIVPM 490

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K+ +       E +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + +++ 
Sbjct: 491 KSKEDTVMQTAEALYEELKARGLNVILDDRNERPGVKFADLELIGIPHRIVVSDRNLAED 550

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
           K E   R  G ++ +S EE++   S
Sbjct: 551 KYEYVDRRDGEKQLLSREELLAKVS 575


>gi|312898748|ref|ZP_07758137.1| prolyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620179|gb|EFQ03750.1| prolyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 574

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 118/284 (41%), Positives = 175/284 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+++P +A++ASHKLML+ GM+ +++ G+YS+LPLG+K    V  IIR+E
Sbjct: 1   MLASKLYAPTLRDDPAEADVASHKLMLKAGMLRKNAAGLYSFLPLGRKVCLKVENIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA E+ +P +Q A++W E+GR+D YG EM +L DR+D     GPTHEE++T + R+
Sbjct: 61  MNRSGAQEVMMPIVQPAEIWRETGRWDVYGPEMFKLKDRHDNEYCLGPTHEELITTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   +Q+Q K+RDE+RPRFG+MRSREF+MKDAYSFD+  EG   SY  M+ +
Sbjct: 121 ELRSYKQLPVNLWQMQNKYRDEIRPRFGLMRSREFVMKDAYSFDVDREGMIKSYESMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF   G++  P+ A+SG IGG+ SHEF+ LA  GE  V             +     
Sbjct: 181 YSRIFTECGIEYRPVLADSGQIGGNYSHEFMALAKAGEADVVICTKCGFAANVEKAVPNT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            I     + E         + + +      +P  K + A   ++
Sbjct: 241 LISEDEELHEAELFETPECATIQDLVEQVKVPIEKTIKAVAFDI 284



 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/183 (38%), Positives = 102/183 (55%), Gaps = 1/183 (0%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E+        +    +GIEVG +F  GTKYS  ++ATF   DGK     MG YGIG  R
Sbjct: 389 TEQDVCPECGGEVKLTQGIEVGQVFGLGTKYSESLNATFLDKDGKAKPFVMGCYGIGVTR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA IE  HD KGIIWP + APF+  ++ +   D+      +K+Y  L  +  DV  DD
Sbjct: 449 TVAATIEQLHDDKGIIWPVATAPFEAVVLPVNMKDEAIVSVAKKLYDELLDLDVDVLLDD 508

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +F  ADL+G+P+++ VGSK  +D KVE+K R T   E++++E    + +    
Sbjct: 509 RDERAGVKFNDADLIGYPVRLTVGSK-AADGKVEVKIRRTDEEEEVTIEGAAEHVARLLR 567

Query: 444 NNR 446
           + R
Sbjct: 568 DLR 570


>gi|153216557|ref|ZP_01950520.1| prolyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|153830554|ref|ZP_01983221.1| prolyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|124114232|gb|EAY33052.1| prolyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|148873952|gb|EDL72087.1| prolyl-tRNA synthetase [Vibrio cholerae 623-39]
          Length = 571

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +E +++  +I++   + +
Sbjct: 546 YKNRRSGEKEAVAMASIIDFIQAKLA 571


>gi|229152018|ref|ZP_04280213.1| Prolyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228631367|gb|EEK88001.1| Prolyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 566

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++++EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVNVEELQTYIANILK 566


>gi|332251674|ref|XP_003274971.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 1
           [Nomascus leucogenys]
          Length = 723

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 150/445 (33%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKLQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y   M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIFNSRLWMTSGHWQHYSDNMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RTVYSIFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 631 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 691 RDNKVHGERTISETIERLQQLKQSR 715


>gi|148979813|ref|ZP_01815720.1| prolyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145961607|gb|EDK26907.1| prolyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 572

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y   F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCNAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 117/207 (56%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I        A   D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELAQVEDLRNVIEGDLSPCGQGTLQLKRGIEVGHIFQLGNVYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDIELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R  G +E ++++ ++ + + +F+ 
Sbjct: 546 YKNRRAGTKEAVAIDSIVEHVTSQFAK 572


>gi|206972654|ref|ZP_03233595.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206732411|gb|EDZ49592.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 566

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|332821648|ref|XP_003310808.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic [Pan troglodytes]
          Length = 756

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 339 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 398

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 399 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 457

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 458 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 516

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 517 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 570

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 571 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 609

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 610 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 663

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 664 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 723

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 724 RDNKVHGERTISETIERLQQL 744


>gi|71021529|ref|XP_760995.1| hypothetical protein UM04848.1 [Ustilago maydis 521]
 gi|46100879|gb|EAK86112.1| hypothetical protein UM04848.1 [Ustilago maydis 521]
          Length = 759

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 157/450 (34%), Gaps = 37/450 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+Y   +L+   RD      +      M H+ S G   WLP G +  + +   ++ E 
Sbjct: 336 QMSEYKQFLLEAAKRDHRKIGKE--QELFMFHELSPGSCFWLPHGARIYNTLQEFLKSEY 393

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + ++ LW  SG + +Y  +M  L   + +     P +      +F S 
Sbjct: 394 RQRGFDEVVTPNMYNSKLWQTSGHWQNYKDDMFVLGV-DKEQFALKPMNCPGHCLMFASR 452

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY+ LP       +  R+E      G+ R R F   DA+ F ++    +      F  
Sbjct: 453 DRSYKELPLRLADFGVIHRNEASGALSGLTRVRRFCQDDAHIFCMSS-QIEQEMAGCFDF 511

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             R++   G +   +   + P       E    A+              + +   +  F 
Sbjct: 512 LERVYGLFGFEF-KLELSTRPEKFLGDIETWNAAEARLGAALDKFVPGKWELNPGDGAFY 570

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +I                    D++  + + +   ++      F  +Y      
Sbjct: 571 GPKIDITIS-------------------DAMRRHFQCATIQLDFQLPQQFKLEYRTA--V 609

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G    +  V +    +G++    A++     GK   WP  ++P ++ ++ +      
Sbjct: 610 SQGGETQAERPVMIHRAVVGSLERFIAILTEHFAGK---WPFWLSPRQLLVVPVTN---T 663

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +  RL   G     D     +  +    ++  +    +VG + +  + V I++
Sbjct: 664 VFDYAKSVQQRLWDQGFFADVDLSDNTLPKKIRNGEIAQYNFVFVVGHEEMQTNSVNIRN 723

Query: 421 RLT----GIREDMSLEEVINYASHRFSNNR 446
           R      G  E M L++ I       S  R
Sbjct: 724 RDDVNQKGKAETMDLDKTITLLKALKSQRR 753


>gi|238922273|ref|YP_002935787.1| threonyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|238873945|gb|ACR73653.1| threonyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 591

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 164/439 (37%), Gaps = 37/439 (8%)

Query: 13  ENPRDAEIASHKLMLRT--GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
              RD      ++ L     +I    +G+  +LP G      +   I++++ + G + + 
Sbjct: 178 AKERDHRKIGKEMELFMSDDLI---GRGLPMFLPKGYTVWQELENYIKDKERKLGYLHVM 234

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +L+  SG +D Y + M    +   ++ +  P +      I+ + + SY++LP 
Sbjct: 235 TPCVGTVNLYKTSGHWDHYKENMFPAMEVEGESFVLRPMNCPHHMMIYANKMHSYKDLPI 294

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +I   FR E      G+ R R F   DA+ F +TPE  +  + K+       +    
Sbjct: 295 RIGEIAHDFRFEASGTLKGIERGRHFCQNDAHLF-VTPEQIESEFAKVVDLIFETYKDFN 353

Query: 190 L-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +     + +   P      H+   + +  E  +          +     ++ + I     
Sbjct: 354 ITDYRCVLSLRDPEDKVKYHDDDEMWNNAENALRK-------VLNDIGIEYTEEIGEA-- 404

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      +  +  ++     +S   ++    F   +K++L    T+   DG+
Sbjct: 405 --------AFYGPKLDVNVKPAIGNEYTLSTCQLD----FCLPSKFNL----TYIDKDGQ 448

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               V +    +G++    A I     G   +W   +AP + +++ +K  D+        
Sbjct: 449 RKTPVVLHRAILGSLDRFMAYILEETKGNLPLW---LAPVQATILPVKNEDEELNAYAHG 505

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L+  G  V  D+  E++G +   A +   P  +++G    +D  V  +        
Sbjct: 506 LYDYLADNGIRVEIDERAEKLGYRVREAQVKKIPYLIVLGKNEAADGTVSYRLHGEQKST 565

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S +E +       +  +
Sbjct: 566 TVSKDEFVAMLKDEIATKK 584


>gi|270009374|gb|EFA05822.1| hypothetical protein TcasGA2_TC008604 [Tribolium castaneum]
          Length = 685

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 151/438 (34%), Gaps = 43/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + R       H+ S G   + P G    + +   I++E  + 
Sbjct: 272 LKEWEKFQEEAAKRDHRKIGRDQELFFFHELSPGSCFFQPRGAHIYNTLINFIKKEYRKR 331

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW  SG +  Y   M    D         P +      IF +  +S
Sbjct: 332 GFQEVISPNIFNAKLWQVSGHWAHYADNMFSF-DVEKDKFALKPMNCPGHCLIFDNRTRS 390

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F    E  K            
Sbjct: 391 WRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-LEHIKQEIKGALDFLSH 449

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P            A+   ++            P +        
Sbjct: 450 VYSVFGFTFNVV-LSTRPEKYLGDLAMWEQAEKALSEGLDDFGAPWSVNPGDG------- 501

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    +     ++    F    +++L    ++ 
Sbjct: 502 -------------AFYGPKIDITVHDALKRAHQCGTIQLD----FQLPIRFNL----SYV 540

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K   V +    +G++  + A++  S  GK   WP  ++P +  +I +        
Sbjct: 541 SESGEKKRPVIIHRAILGSVERMIAILTESCGGK---WPFWISPRQAMVIPVGP---TYD 594

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  + +  +L + G     D D G+ +  +   A L  F   ++VG K  S   V ++ R
Sbjct: 595 EYAQDVKKKLYEAGFMAEVDTDAGDTMNKKIRNAQLAQFNFILVVGEKERSSQTVNVRTR 654

Query: 422 LTGIREDMSLEEVINYAS 439
              +  ++S+E +I    
Sbjct: 655 DNIVHGEISVEGLIEKFK 672


>gi|194374367|dbj|BAG57079.1| unnamed protein product [Homo sapiens]
          Length = 756

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 339 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 398

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 399 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 457

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 458 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 516

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 517 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 570

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 571 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 609

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 610 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 663

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 664 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 723

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 724 RDNKVHGERTISETIERLQQL 744


>gi|218438508|ref|YP_002376837.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|226699136|sp|B7K9K1|SYP_CYAP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218171236|gb|ACK69969.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 600

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 120/234 (51%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+R+E
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALEDRQERELGLGPTHEEVITFI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD  PEG K +Y  M
Sbjct: 121 AREMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDTDPEGLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D     
Sbjct: 181 DKAYRNILRRCGLAFRAVDADSGAIGGSGSQEFMVLADAGEDEVLYTDDGKYAA 234



 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 1/165 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIEVGHIF  GTKYS  M AT+    G++  + MG YGIG  R+  + +E S+D 
Sbjct: 431 LQSARGIEVGHIFQLGTKYSHAMGATYTNEQGEEMPLVMGCYGIGVSRLAQSAVEQSYDK 490

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP+   ++    +D    +  EK+Y  L+  G +   DD  E+ G +F  +
Sbjct: 491 DGIIWPVAIAPYHAIVVIPNINDPQQVEVAEKLYTELNAAGIETLLDDRDERAGVKFKDS 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +L+G P +++ G + + + K+E+  R T   +D+ ++EV++    
Sbjct: 551 ELVGIPYRIVTG-RSLKEGKLEVVERATKKSQDIPIDEVVSTIQQ 594


>gi|153824641|ref|ZP_01977308.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|149741859|gb|EDM55888.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-2]
          Length = 571

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A E++YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEQLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +E +++  +I++   + +
Sbjct: 546 YKNRRSGEKEAVAMASIIDFIHAKLA 571


>gi|149190039|ref|ZP_01868316.1| prolyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148836069|gb|EDL53029.1| prolyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 571

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGAELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S +     
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFSSESDYAA 231



 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGQGTIQLKRGIEVGHIFQLGKNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE ++D  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNTILEMGCYGIGVSRVVASAIEQNNDKYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SERVKEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDIELIGIPHTIVIGDRSMDEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +  +++E+++ + + + +
Sbjct: 546 YKNRRTGDKTPVAMEQIVAHVTSQLA 571


>gi|114152276|sp|Q5E719|SYP_VIBF1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 571

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDINKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +            D+ N    D  P  K      RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHFFGVNWDRDVQLGQVEDLRNVVEGDPSPCGKGTLQLKRGIEVGHIFQLGTAYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     A+GK+  ++MG YGIG  RVVA+ IE ++D  GI+WP+++APF ++++ +  H 
Sbjct: 426 NCGVLDANGKNVILEMGCYGIGVSRVVASAIEQNNDEYGIVWPEAIAPFTVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+G P  +++G + + +   E
Sbjct: 486 SERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R    +E + +  ++ +   + S
Sbjct: 546 YKNRRANTKEAVEMANIVEHIKAQLS 571


>gi|300726434|ref|ZP_07059882.1| threonine--tRNA ligase [Prevotella bryantii B14]
 gi|299776282|gb|EFI72844.1| threonine--tRNA ligase [Prevotella bryantii B14]
          Length = 654

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 167/458 (36%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTQLRLRLQELLRRV 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P + S +L++ SG +  YGK+  +       D+  +  P +     +I+
Sbjct: 287 LKPYNYQEVITPGIGSKNLYITSGHWAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEIY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 ARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKAEFENN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                ++F   G      +                  D  +T+ +   D +     +   
Sbjct: 406 IDIIQKVFSIFGFNDYEAQISLR--------------DPKDTEKYIGSDEIWEESQNAIR 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +      L ++                E+   +    K        +G  +  GT    Y
Sbjct: 452 EACKEKGLKAV---------------EEEGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G+  +W   + P ++++
Sbjct: 497 NLPERFKLEYTDVDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGRFPLW---LIPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  +K+ A L K     + DD  E++G +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYAKKVKAYLDKHDVRGYIDDRNEKVGRKIRDNELKRVPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
               V ++ +  G +  M++EE     +   +    V+
Sbjct: 611 EGGLVSMRKQGGGDQASMTMEEFAKRINEEVAEQLKVV 648


>gi|254932366|ref|ZP_05265725.1| prolyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293583922|gb|EFF95954.1| prolyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|328475041|gb|EGF45829.1| prolyl-tRNA synthetase [Listeria monocytogenes 220]
 gi|332311762|gb|EGJ24857.1| Prolyl-tRNA synthetase [Listeria monocytogenes str. Scott A]
          Length = 568

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 163/285 (57%), Gaps = 1/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S               +
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEMAPVLY 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  S     +           + +   F  +P  K + +   +V
Sbjct: 241 MEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQV 285



 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 340 ENTRVFADNAVKDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W   ++PF + LI +    +      E +Y+ L   G  V  DD  E+ G +FA A
Sbjct: 460 NGFVWDKQISPFDLHLIPVNVKSEEQVAFAETLYSSLQDAGFSVLIDDRAERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 520 DLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|89075398|ref|ZP_01161815.1| prolyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89048814|gb|EAR54384.1| prolyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 571

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEIISHQLMLRAGMIRKLASGLYAWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHARPFVLSPTAEEVFTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K      RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHHVGINWGRDVELGRVEDLRNVVEGDLSPCGKGTLQLKRGIEVGHIFQLGNAYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +     A+GK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF +S++ +    
Sbjct: 426 NCGVLDANGKNAILEMGCYGIGVSRVVASAIEQNHDENGIIWPDALAPFHVSIVPMNMAK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  FA  +LLG P  +++G++ + + ++E
Sbjct: 486 SEEVKEAAEKLYADLTAAGIEVLFDDRKERPGVMFADHELLGIPHTIVIGNRSLENGEME 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TGI+E +++ +V+ +   + +
Sbjct: 546 YKNRRTGIKEAVAVNDVVTFLKQKMA 571


>gi|308509394|ref|XP_003116880.1| CRE-TARS-1 protein [Caenorhabditis remanei]
 gi|308241794|gb|EFO85746.1| CRE-TARS-1 protein [Caenorhabditis remanei]
          Length = 749

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 166/442 (37%), Gaps = 42/442 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +  + +E   RD      +  L     H  S G   W P G    + +   IR++
Sbjct: 329 KQLKEWQKLQEEAAKRDHRKLGKEQDLF--FFHPLSPGSAFWYPKGAHIYNKLVDFIRKQ 386

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P + +  LW  SG +  Y ++M ++    ++     P +      +F  
Sbjct: 387 YRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEKEE-FGLKPMNCPGHCLMFGH 445

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              +Y  LPF F    +  R+E+     G+ R R F   DA+ F    +       +   
Sbjct: 446 MPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIF-CRKDQIAEEIKQCLD 504

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                + ++   +  +   + P G     E    A+   T+   +        P +    
Sbjct: 505 FLEYAYEKVFGFTFKLNLSTRPEGFLGEIETWNQAEADLTEALNATGRKWALNPGDG--- 561

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  + D+L  N + +   ++    F    ++     
Sbjct: 562 -----------------AFYGPKIDITIQDALKRNFQCATIQLD----FQLPNQF----D 596

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++    G K   V +    +G++  + A++  S+ GK   WP  ++P +  +I +    
Sbjct: 597 LSYFDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV---H 650

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  RD    +  ++ + G +V +D   G+ +  Q   + L  F   +++G+K   +  V 
Sbjct: 651 ESVRDYASDVKKKIFEAGFEVEYDATCGDTMNKQVRNSQLAQFNFILVIGAKEKENGTVN 710

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R   +R ++ LE++++   
Sbjct: 711 VRTRDNAVRGEVPLEKLLSKFR 732


>gi|218235963|ref|YP_002368620.1| prolyl-tRNA synthetase [Bacillus cereus B4264]
 gi|226731428|sp|B7HDU2|SYP_BACC4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218163920|gb|ACK63912.1| proline--tRNA ligase [Bacillus cereus B4264]
          Length = 566

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++++EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVNVEELQTYIANILK 566


>gi|158335473|ref|YP_001516645.1| prolyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|189083486|sp|B0C230|SYP_ACAM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158305714|gb|ABW27331.1| prolyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 600

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 148/234 (63%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRVGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA E  +P +Q A+LW ESGR+D+Y +    M  L DR D+ +  GPTHEEV+T +
Sbjct: 61  MDAAGAQECLLPQIQPAELWQESGRWDTYTQAEGIMFALQDRQDRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K  Y+KM
Sbjct: 121 ARDMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFSTDEADLKIIYSKM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  I  R GL    + A+SG IGG  S EF+VLA+ GE +V  + D     
Sbjct: 181 HDAYCNILQRSGLAYRAVDADSGAIGGSGSQEFMVLAEAGEDEVLYTDDGKYAA 234



 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 1/175 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P+    +ARGIE+GHIF  GTKYS  + AT+    GK+  + MG YG+G  R+  A +
Sbjct: 423 HDPKQTLQTARGIEIGHIFQLGTKYSQALGATYTNEAGKEQPLVMGCYGVGVSRLAQAAV 482

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GI+WP ++AP+   +I     D    +A EK+Y+ L+  G +   DD  E+ G
Sbjct: 483 EQSYDKDGIVWPVAIAPYHAIIIIPNGKDSDQVEAAEKLYSELNAAGIETLLDDRTERAG 542

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F  ADL+G P +++ G + + +  VE+  R T     ++L++V+       + 
Sbjct: 543 VKFKDADLIGIPYRIVTG-RSLKEGNVEMVERATHDAHQIALDQVLPTLKEYLAK 596


>gi|114659235|ref|XP_001144545.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           2 [Pan troglodytes]
          Length = 802

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 154/441 (34%), Gaps = 44/441 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 391 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 450

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 451 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 509

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 510 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLRFLQSVYST 568

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 569 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 616

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 617 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 659

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 660 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 713

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   
Sbjct: 714 LQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNK 773

Query: 425 IREDMSLEEVINYASHRFSNN 445
           I  ++ +   I+   +     
Sbjct: 774 IHGEILVTSAIDKLKNLKKTR 794


>gi|90580993|ref|ZP_01236794.1| prolyl-tRNA synthetase [Vibrio angustum S14]
 gi|90437871|gb|EAS63061.1| prolyl-tRNA synthetase [Vibrio angustum S14]
          Length = 571

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAFS 224



 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHHVGINWGRDVELGRVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNAYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +     A+GK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF +S++ +    
Sbjct: 426 NCGVLDANGKNTILEMGCYGIGVSRVVASAIEQNHDENGIIWPDALAPFHVSIVPMNMAK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  FA  +LLG P  +++G++ + + ++E
Sbjct: 486 SEEVKEAAEKLYADLTAAGIEVLFDDRKERPGVMFADHELLGVPHTIVIGNRSLENGEME 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TGI+E +++ +V+ +   + +
Sbjct: 546 YKNRRTGIKEAVAVNDVVAFLKQKMA 571


>gi|255507180|ref|ZP_05382819.1| threonyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525626|emb|CBJ15104.1| threonyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435188|gb|ADH17366.1| threonyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438907|gb|ADH21060.1| threonyl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 635

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 154/447 (34%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +      S G+  + P G    + +    +  
Sbjct: 221 KELKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QTCSAGMPFFHPRGMVVWNALVDYWKRL 278

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  ++  P L + +LW  SG +++Y + M  L   +++     P +       +++
Sbjct: 279 HQRAGYQQIQTPQLMNRELWEISGHWENYKENMYTLTV-DEEDYAIKPMNCPGCMLYYKT 337

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR  P    +I    R EL     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 338 QLHSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILN 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL+   +   + P  G   S +   LA     +            P E   
Sbjct: 397 LVSELYGTFGLEY-HLELSTRPEQGTIGSDDLWELATEALKRALVKSQKPFIISPGEGAF 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 456 YGPKIDI---------------------------HVKDAINRTWQCGTI-QLDMFLPERF 487

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A G K   + +     G++     ++     G+  +W   ++P  + +I +   
Sbjct: 488 DLKYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHVRIITVADR 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +++    S++G  V  D   E +  +   A  +     + +G K +    + 
Sbjct: 545 HEA---RAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLA 601

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R   +  D+++E+  +       +
Sbjct: 602 VRIRDNRVLNDIAVEQFSHVILEELRS 628


>gi|307154337|ref|YP_003889721.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306984565|gb|ADN16446.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 600

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 116/234 (49%), Positives = 148/234 (63%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIKSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNAIGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALGDRQERELGLGPTHEEVITFI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AREMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTDETSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  +F R GL    + A+SG IGG  S EF+VLAD GE +V  + D     
Sbjct: 181 DQAYRNMFRRCGLAFRGVEADSGAIGGSGSQEFMVLADAGEDEVLYTADGNYAA 234



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 1/171 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     SARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  A +
Sbjct: 425 HDPTQTLQSARGIEVGHIFQLGTKYSQAMGATYTNEQGEEIPLVMGCYGMGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+   ++    +D +  +  EK+Y  L++VG +   DD   + G
Sbjct: 485 EQSYDKDGIIWPVAIAPYHAIVVIPDLNDPLQVETAEKLYQELNQVGVETLLDDRDARAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +F  ++L+G P +++ G + + D KVE+  R +   +D+++EEV++    
Sbjct: 545 VKFKDSELIGIPYRIVTG-RSLKDGKVEVVERASKKSQDIAIEEVVSTLQQ 594


>gi|228954095|ref|ZP_04116124.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071317|ref|ZP_04204540.1| Prolyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228711771|gb|EEL63723.1| Prolyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228805661|gb|EEM52251.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 566

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|15614982|ref|NP_243285.1| prolyl-tRNA synthetase [Bacillus halodurans C-125]
 gi|81857777|sp|Q9KA71|SYP_BACHD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|10175039|dbj|BAB06138.1| prolyl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 569

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S + +P ++E P DA++ SH+LMLR GMI Q + GIY++LPL ++ +  + +I+REE
Sbjct: 1   MKQSFFLVPTMREVPADADVVSHQLMLRAGMIRQVAAGIYTYLPLARRVIRKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+++PTL  A+LW ESGR++ YG E++RL DR+++    GPTHEEV+T + R 
Sbjct: 61  LDQTGAQEITMPTLHPAELWQESGRWEKYGDELMRLTDRHNRQFALGPTHEEVITSLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF    E     Y  M+ +
Sbjct: 121 SINSYKKLPLNVYQIQSKFRDERRPRFGLLRGREFIMKDAYSFHTGGESLDEMYKVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  +HEF+ LAD GE  +  S       
Sbjct: 181 YSRIFRRAGLNVRPVIADSGAIGGKDTHEFMALADVGEDTIAYSDQSDYAA 231



 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
              +   +   +       +       + E+        +D+   +  D  P+ K     
Sbjct: 342 KVIADHGIKSIVNGVCGANESNKHFIHVNEERDFTVDTYADLRFIQEGDPSPDGKGTIRF 401

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVG +F  GT YS  + ATF   +GK   + MG YGIG  R+VAAVIE  HD  GI
Sbjct: 402 AQGIEVGQVFKLGTVYSEKLGATFLDENGKSQPMLMGCYGIGVSRMVAAVIEQHHDEDGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + ++ +    +      + +Y  L + G DV  DD  E+ G +F  ADL+
Sbjct: 462 VWPTSVAPFDVHVLALNVKKEEQMKLADSVYHSLQQAGLDVLLDDRPERAGVKFKDADLI 521

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL+V VG +   +  VE+K R TG   ++  +E++     +   
Sbjct: 522 GLPLRVAVGKR-ADEGYVEVKVRKTGEVIEVHADELVPTIQAKLQQ 566


>gi|220906778|ref|YP_002482089.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|254782895|sp|B8HNJ7|SYP_CYAP4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219863389|gb|ACL43728.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 613

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+R+E
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLGKVSQIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P +Q A+LW ESGR+D+Y K    M  L DR D+ +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQIQPAELWQESGRWDTYTKAEGIMFALTDRQDRQLGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I++YR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   E  + +Y KM
Sbjct: 121 ARDLIRTYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDADVESLRVAYGKM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  I  R GLK   + A+SG IGG  S EF+VLAD GE +V  ++D     
Sbjct: 181 HQAYCNILQRCGLKYRAVDADSGAIGGSGSQEFMVLADAGEDEVLYTEDGRYAA 234



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             PE    +ARGIE+GHIF  GTKYS  M AT+    G++  + MG YGIG  R+  A +
Sbjct: 436 HNPEQTLKTARGIEIGHIFQLGTKYSQAMGATYTNEQGEEVPLVMGCYGIGVSRLAQAAV 495

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP++  ++    ++    +A  ++Y  L+  G +   DD  E+ G
Sbjct: 496 EQSYDKDGIIWPVAIAPYQAIVVIPNLNETTQVEAATQLYQDLNAAGIETLLDDRNERAG 555

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F  ADL+G P +++ G + ++  KVE+  R +    +++L++VI       +
Sbjct: 556 VKFKDADLIGIPYRIVTG-RSLAQGKVEVVQRASRSSTEIALDQVIPTLKEWIA 608


>gi|257463827|ref|ZP_05628214.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317061364|ref|ZP_07925849.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313687040|gb|EFS23875.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 637

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 161/445 (36%), Gaps = 50/445 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K FL +++E    AE   H+ +   L    + ++  G   +LP G    + +  + R E 
Sbjct: 228 KDFLKLMEE----AEKRDHRKLGKELELFFLSEYGPGFPFFLPKGMVLRNTLIDLWRAEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   +  +D      P +       F+  
Sbjct: 284 EKAGYVQIDTPIMLNRELWEISGHWFNYRENMYT-SSIDDVDFAIKPMNCPGGVLAFKYQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP    ++    R E      G+ R R F   D++ F +T E  +     +   
Sbjct: 343 QHSYRDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     + E    A+             +F I   +  F 
Sbjct: 402 IDKFYSKLFGFQYSIELSTRPEKSIGTDEIWEKAEAALAGALHHL-GREFKINEGDGAFY 460

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
                  I                          K    R  + G I      ++LP   
Sbjct: 461 GPKLDFKI--------------------------KDAIGRTWQCGTI---QLDFNLPERF 491

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G DG+ H  V +     G++     ++   + G   +W   +AP +I ++ I   
Sbjct: 492 DVTYVGEDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPMW---LAPVQIKVLTINDD 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKV 416
              C    ++I  +L + G     DD  E IG +   A+     P+QVI+G   +   +V
Sbjct: 549 ---CVSYAKEIVEKLKEQGIRAELDDRSESIGYKIREANGRYKIPMQVIIGKNEIEKKEV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +E M L   +      
Sbjct: 606 NIRRFGSQAQESMDLNAFLAMVKEE 630


>gi|297545340|ref|YP_003677642.1| prolyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843115|gb|ADH61631.1| prolyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 570

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 116/241 (48%), Positives = 157/241 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  IIREE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+ KM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFEKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 D 241
           +
Sbjct: 241 N 241



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 111/232 (47%), Gaps = 4/232 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            GE  +    +           +  D    N +           +D+ N    D  P   
Sbjct: 340 KGEVMIIVDNEIPQMRNFIVGANETDYHIKN-VNYGRDFKADVVADIKNVIEGDKCPRCG 398

Query: 276 --RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE +H
Sbjct: 399 SPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIVMGCYGIGINRTVAAIIEQNH 458

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F 
Sbjct: 459 DDKGIIWPMSVAPYHVIIVPVNVSNEAQNGVAEDIYAALQKEGIEVLIDDRDLRAGVKFN 518

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ADLLG P+++ VG K VSD  VEIK R     E++ + +V+    +     
Sbjct: 519 DADLLGIPIRITVGKK-VSDGIVEIKLRENEEAEEVKISDVVEKVKNIIKEK 569


>gi|229530020|ref|ZP_04419410.1| prolyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229333794|gb|EEN99280.1| prolyl-tRNA synthetase [Vibrio cholerae 12129(1)]
          Length = 571

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q   LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFQLWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 546 YKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|297205704|ref|ZP_06923099.1| threonine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|297148830|gb|EFH29128.1| threonine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 656

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 165/442 (37%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 241 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGY 300

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M    D  D  M+   P +      +++ HI+SY
Sbjct: 301 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSY 360

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    E  +  + K+    + +
Sbjct: 361 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LEQVQEEFAKILKLIMDV 419

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D   T  + + D M            D + 
Sbjct: 420 YKDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLG 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 466 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----DLSYVG 515

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++H   M   G +G M    A +   + G    W   +AP ++ +I +        +
Sbjct: 516 QDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPEQVEIIPVNL--DAHGE 570

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L K G     D   E++G +   +     P  +++G   ++ + V ++   T
Sbjct: 571 YAKKVRDELLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVLGDDEMNSNAVNVRPYGT 630

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +E MSL++ I+       + 
Sbjct: 631 EKQESMSLDKFIDELQADVDSY 652


>gi|91087799|ref|XP_967345.1| PREDICTED: similar to RH56418p [Tribolium castaneum]
          Length = 707

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 151/438 (34%), Gaps = 43/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + R       H+ S G   + P G    + +   I++E  + 
Sbjct: 294 LKEWEKFQEEAAKRDHRKIGRDQELFFFHELSPGSCFFQPRGAHIYNTLINFIKKEYRKR 353

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW  SG +  Y   M    D         P +      IF +  +S
Sbjct: 354 GFQEVISPNIFNAKLWQVSGHWAHYADNMFSF-DVEKDKFALKPMNCPGHCLIFDNRTRS 412

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F    E  K            
Sbjct: 413 WRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCA-LEHIKQEIKGALDFLSH 471

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P            A+   ++            P +        
Sbjct: 472 VYSVFGFTFNVV-LSTRPEKYLGDLAMWEQAEKALSEGLDDFGAPWSVNPGDG------- 523

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    +     ++    F    +++L    ++ 
Sbjct: 524 -------------AFYGPKIDITVHDALKRAHQCGTIQLD----FQLPIRFNL----SYV 562

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K   V +    +G++  + A++  S  GK   WP  ++P +  +I +        
Sbjct: 563 SESGEKKRPVIIHRAILGSVERMIAILTESCGGK---WPFWISPRQAMVIPVGP---TYD 616

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  + +  +L + G     D D G+ +  +   A L  F   ++VG K  S   V ++ R
Sbjct: 617 EYAQDVKKKLYEAGFMAEVDTDAGDTMNKKIRNAQLAQFNFILVVGEKERSSQTVNVRTR 676

Query: 422 LTGIREDMSLEEVINYAS 439
              +  ++S+E +I    
Sbjct: 677 DNIVHGEISVEGLIEKFK 694


>gi|116630042|ref|YP_815214.1| threonyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238853770|ref|ZP_04644136.1| threonine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282851336|ref|ZP_06260701.1| threonine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311110329|ref|ZP_07711726.1| threonine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273021|sp|Q041U6|SYT_LACGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116095624|gb|ABJ60776.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactobacillus
           gasseri ATCC 33323]
 gi|238833579|gb|EEQ25850.1| threonine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282557304|gb|EFB62901.1| threonine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311065483|gb|EFQ45823.1| threonine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 643

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 163/443 (36%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I +++   G
Sbjct: 227 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 287 YEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 347 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIREEFAKVLKLIMD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M     S      D +
Sbjct: 406 VYKDFDITDYYFRLSYR--------------DPKNTDKYYANDEMWEKSQSMLKAAMDDL 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 452 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 501

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP +  +I +   ++   
Sbjct: 502 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--EEAHG 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +K+   L+K G     D   E++G +   +     P  +++G   ++ + V ++   
Sbjct: 557 AYADKVREELAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDDEMNANGVNVRRYG 616

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +   SL++ I        + 
Sbjct: 617 TEEQISKSLDDFIAEIDADVKSY 639


>gi|304319895|ref|YP_003853538.1| Threonyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303298798|gb|ADM08397.1| Threonyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 657

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 151/449 (33%), Gaps = 57/449 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +L  L+E    AE   H+ + +      + + + G   W P G      + A IR
Sbjct: 227 KALKAYLTRLEE----AEKRDHRRLGKQMDLFHLQEEAHGSVFWHPKGYTMWLALEAYIR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMI 105
              +  G  E+  P L  A LW  SG +  Y + M  + D                K M 
Sbjct: 283 RRLDAAGYKEVKTPQLIDAKLWQSSGHWGKYSQNMFVVPDEVPDVEGEGPVIDPEAKLMA 342

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFD 164
             P +      IFR  I SYR+LP    +     R+E      G+MR R+F   DA+ F 
Sbjct: 343 VKPMNCPAHVQIFRQGITSYRDLPIRMAEFGCCHRNEPHGALHGIMRVRQFTQDDAHIF- 401

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            T E       +       ++  LG + + +   + P     + EF    ++   +   +
Sbjct: 402 CTEEQIVEETIRFCELASSVYRDLGFEDVRVAMATRPEQRIGTDEFWDKMESALEEALIA 461

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                  +P E   +   +                               +    R  + 
Sbjct: 462 AGLEFEVLPGEGAFYAPKLEY---------------------------HLRDAIGRSWQC 494

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           G +          + A +   DG K   + +    +G+M     ++  +H G+  +W   
Sbjct: 495 GTL-QLDALLPERLDAVYIDEDGAKKRPIMLHRAILGSMERFLGILIENHAGRMPLW--- 550

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP +I +  I           E+           V  D   E+I  +         P+ 
Sbjct: 551 LAPTQIVVATITTD---VNAFAEEAADAFRAANLRVETDLRNEKINYKVREHSDGKVPII 607

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++G++   +  + ++   +   + +SL+
Sbjct: 608 AVIGAREAEERTLSVRRLGSKQSQTLSLD 636


>gi|91786735|ref|YP_547687.1| prolyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123356060|sp|Q12FA3|SYP_POLSJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91695960|gb|ABE42789.1| prolyl-tRNA synthetase [Polaromonas sp. JS666]
          Length = 580

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R GMI +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHQLMMRAGMIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM++P +Q A+ W E+GR++  G E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAVEMTMPVIQPAEFWQETGRFEKMGPELLRIKDRHGRDFVVQPTSEEVITDVMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF MKDAYSFD     +K SY  M  +
Sbjct: 121 DIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDQASAKASYQIMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVGH+FY GTKYS  M+ATF   +GK  +++MG YGIG  R+ AA IE +HD +G
Sbjct: 413 IERGIEVGHVFYLGTKYSQAMNATFLDENGKPQFLEMGCYGIGITRLPAAAIEQNHDERG 472

Query: 338 IIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           IIWPD++APF + +  I        + A +K+Y  L   G DV  DD GE+ G+ FA  +
Sbjct: 473 IIWPDAIAPFTVVICPISPDRFADVKAAADKLYGELLAAGVDVILDDRGERPGAMFADWE 532

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           L+G P +V +G + + + ++E +HR       +     +++   + +
Sbjct: 533 LIGVPHRVTIGDRGLKEGQLEYQHRRDAASSKVDAATALDFLKGKLA 579


>gi|73954351|ref|XP_536509.2| PREDICTED: similar to threonyl-tRNA synthetase [Canis familiaris]
          Length = 789

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 154/453 (33%), Gaps = 50/453 (11%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 363 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYR 422

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 423 KRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 481

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 482 RSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAI-EQIEDEIKGCLDFL 540

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                 P +      
Sbjct: 541 RTVYSIFGFSF-KLNLSTRPEKYLGDIEVWNQAEKQLENSLNEFGEKWELNPGDG----- 594

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 595 ---------------AFYGPKIDIQIKDAIGRFHQCATIQLD----FQLPIRFNLTF--V 633

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW--------PDSVAPFKISLIN 353
               D K   V +    +G++  + A++  ++ GK   W        P  ++P ++ ++ 
Sbjct: 634 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK--WWFKASSGTMPFWLSPRQVMVVP 691

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +      C +  +K+  +       V  D D G  +  +   A L  +   +++G K  +
Sbjct: 692 VGP---TCDEYAQKVRQQFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKA 748

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V I+ R   +  + ++ E I        + 
Sbjct: 749 SGTVNIRTRDNKVHGERTILETIERLQQLKQSR 781


>gi|227908819|ref|NP_758514.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Mus musculus]
 gi|81896660|sp|Q8BLY2|SYTC2_MOUSE RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|26334063|dbj|BAC30749.1| unnamed protein product [Mus musculus]
          Length = 790

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 158/442 (35%), Gaps = 46/442 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 379 EKFQEEAKSRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNALMDFIREEYHKRNFTE 438

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +
Sbjct: 439 VLSPNMYNSKLWETSGHWQHYSNNMFTF-DVEKDTFALKPMNCPGHCLMFAHRPRSWREM 497

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F +  E  +            ++  
Sbjct: 498 PVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCM-VEQIEEEIKGCLHFLQSVYST 556

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 557 FGFSF-QLNLSTRPEHFLGEIEIWDEAERQLQNSLVEFGKPWKINPGDG----------- 604

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 605 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 647

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K+  V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C +  
Sbjct: 648 DDKNRPVIIHRAILGSVERMIAILSENYGGK---WPLWLSPRQVMVIPVGP---ACENYA 701

Query: 366 EKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            ++     + G   DV  DD    +  +   A L  +   ++VG K   ++ V ++ R  
Sbjct: 702 LQVSKECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDN 760

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            I  ++S+  VI    +   + 
Sbjct: 761 KIHGEISIASVIEKLKNLKKSR 782


>gi|229047505|ref|ZP_04193095.1| Prolyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229081074|ref|ZP_04213584.1| Prolyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229111290|ref|ZP_04240843.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229191988|ref|ZP_04318958.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228591539|gb|EEK49388.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228672066|gb|EEL27357.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228702118|gb|EEL54594.1| Prolyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228723752|gb|EEL75107.1| Prolyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 566

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|297565426|ref|YP_003684398.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849875|gb|ADH62890.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 652

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 147/443 (33%), Gaps = 33/443 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD      +L L T +  +  KG+  WLP G      +   + E++   G
Sbjct: 241 YLWRQEEAKKRDHRKLGAELELFT-ISEEVGKGLPLWLPKGAFIRKQLEQYMYEKEQEYG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + S+ L+  SG    Y  +M    +   +     P +      I+++ ++SY
Sbjct: 300 YDYVITPHIASSKLYYTSGHLPYYKDDMYAPIEIEGEEYYLKPMNCPHHHMIYKARLRSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +    +R EL     G+ R R F   DA+ +  +       + K+   +  +
Sbjct: 360 RDLPLRLAEFGTVYRFELSGTLSGLARVRGFTQNDAHIY-CSKSQVTDEFIKVIQLFDEV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G+     R                  +    +        D  I +     +   +
Sbjct: 419 YKDFGISDYWFRLSLPDF------------ENNPEKFGQPGPHWDEAIAAIRAALEQTGA 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    DV    +                    F  G ++       F  
Sbjct: 467 QFVEGIGEATFYGPKLDVQIRSVLGKEESIATN-------QLDFISGQRF----GLEFTN 515

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G K+  V +    +G+     A       G   +W   ++P +  ++ I        +
Sbjct: 516 EKGEKEVPVIIHRAIMGSFDRFFAFYLEHTAGNFPLW---LSPIQAVIVPIA---DRHLE 569

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   +      V  DD  E++ ++   A+L   PL ++VG K   +  + ++ R  
Sbjct: 570 YARQIAQAMKAAKLRVEVDDRPERMNAKIRDAELQKIPLILVVGDKEQEEGTINLRERQA 629

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             +  + LEE+I     R  N +
Sbjct: 630 KAQRTLKLEELIGEMQERVRNRK 652


>gi|198413603|ref|XP_002126928.1| PREDICTED: similar to prolyl-tRNA synthetase
           (mitochondrial)(putative) [Ciona intestinalis]
          Length = 435

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 129/441 (29%), Positives = 207/441 (46%), Gaps = 47/441 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R ++  S  L+L++  I   SKGIY ++P   K+L+ + ++I E+     A ++ +  L 
Sbjct: 28  RASDSRSANLLLQSSFISPSSKGIYHFMPPLVKSLEKLTSLIDEKMKNICAQKVQMSMLS 87

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR---SHIKSYRNLPFTF 132
             D+W  SGR+D++GKE+    +  +      PTHEE +  +     +   SYR+LP   
Sbjct: 88  GKDIWSLSGRWDAFGKEL-ITTNLGEAKHCLSPTHEEAVCKVLSQTFNKFLSYRHLPLRL 146

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           YQ   KFR+E  P+ G++R REFLM D Y+FD T + +  +YN +   Y   F  L +  
Sbjct: 147 YQTNTKFRNEPDPQRGLLRCREFLMNDLYTFDTTKKAAVETYNAVCNIYEEFFKELNIPV 206

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              +A SG IGGD SHE+ +LA  GE  +F   D               + +L  +    
Sbjct: 207 TKAQAGSGLIGGDFSHEYHILAGVGEDNIFICPDTGQAWNSECTNIEKKLDTLKQVD--- 263

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                                       GIEVGH FY G KYS     +F   D K    
Sbjct: 264 ----------------------------GIEVGHTFYLGKKYSKMFKTSFLTPDSKPVPC 295

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIY 369
           +MG YG+G  R++AA +E      G+ WP  +AP+K+ L+  K   +       A   ++
Sbjct: 296 EMGCYGLGVTRILAACLEVLSTESGMRWPHKIAPYKVCLVLPKTGSKEFENGTAAVNNVF 355

Query: 370 ARLSKVGC---DVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDS----KVEIKHR 421
            +L        DV  DD  ++ IG +   A+L+G+PL ++ G K ++      +V I++ 
Sbjct: 356 DKLQNYPLLKNDVIIDDTPKRSIGWKTKHANLIGYPLVIVFG-KGLNSEEQYAEVIIQNP 414

Query: 422 LTGIREDMSLEEVINYASHRF 442
              + + + L+ V+ +    F
Sbjct: 415 DQQLTKHVPLQNVVEFIHDYF 435


>gi|299135303|ref|ZP_07028494.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298590280|gb|EFI50484.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 681

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 142/439 (32%), Gaps = 49/439 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + R        +   G+  W   G      + A +R     
Sbjct: 257 YLKQLEE----AEKRDHRRLGREMDLFHFQEEGPGVVFWHAKGWTLFQAIIAYMRRRL-A 311

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG ++ Y + M           + +     P +      IF
Sbjct: 312 ADYDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFAIKPMNCPGHVLIF 371

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR LP    +  +  R E      G+MR R F   DA+ F  T +       K+
Sbjct: 372 KHGLKSYRELPIRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIF-CTEDQLADECLKI 430

Query: 178 FVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L  +   G +  + ++  + P     +      A++  T+V               
Sbjct: 431 NDLILSTYANFGFEGELTVKLSTRPDKRVGTDAAWDHAESVMTKVL-------------- 476

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +  S N I         A      E +       +    R  + G        ++L
Sbjct: 477 -AQIEAKSGNRIKTSINPGEGAFYGPKFEYVL------RDAIGREWQCGTT---QVDFNL 526

Query: 297 P--MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P    A +      K   V +     G++     ++     G   +W   +AP +  +  
Sbjct: 527 PERFGAFYIDEHSNKVAPVMVHRAICGSLERFTGILIEHFAGHFPLW---LAPVQAVITT 583

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      D   +++      G  V  D   E+I  +     L   P  ++VG K    
Sbjct: 584 ITSDGD---DYAREVFEACRAAGLRVEIDLRNEKINYKVREHSLAKVPALLVVGKKEAET 640

Query: 414 SKVEIKHRLTGIREDMSLE 432
             V I+      +  + L+
Sbjct: 641 RAVSIRRLGREGQTVLPLD 659


>gi|93005293|ref|YP_579730.1| prolyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|114152235|sp|Q1QDK7|SYP_PSYCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|92392971|gb|ABE74246.1| prolyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 572

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LM+R G+I + + G+Y WLP+G + L  V  I+REE
Sbjct: 1   MKASQFLFATLKETPSDADIASSQLMVRAGLIRKIASGLYIWLPMGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW  +GR++ YG E+LR  DR+D+  + GPTHEEV+T++ + 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQLTGRFNDYGPELLRFKDRHDRDFVLGPTHEEVITNLAQG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFGVMR+REF MKDAYSF +       +Y++M+ +
Sbjct: 121 ELRSYKQLPITFFQIQNKFRDEIRPRFGVMRAREFTMKDAYSFHVDQASLAKTYDEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YTRIFTRLGLDFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSD 225



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 8/202 (3%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  M+ T  G 
Sbjct: 371 MNWERDAHITRIVDIRNVHEGDPSPDGKGTLQIKRGIEVGHIFQLGDKYSQAMNCTVSGE 430

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLINIKAHDQ 359
           DGK   + MG YGIG  R++AA IE ++D  GI+WP      DS+APF+++++ +K+ + 
Sbjct: 431 DGKPVTLMMGCYGIGVSRIIAAAIEQNNDENGIMWPSTPDISDSLAPFEVAIVPMKSKED 490

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +    +Y  L  +G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E  
Sbjct: 491 TVMETATALYEELKALGINVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEDKYEYV 550

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           +R    ++ +S +EVI   S +
Sbjct: 551 NRRDSEKQLLSRDEVIAKVSGK 572


>gi|15640891|ref|NP_230522.1| prolyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585725|ref|ZP_01675520.1| prolyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121728341|ref|ZP_01681371.1| prolyl-tRNA synthetase [Vibrio cholerae V52]
 gi|147673158|ref|YP_001216355.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|153819016|ref|ZP_01971683.1| prolyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153823083|ref|ZP_01975750.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227081051|ref|YP_002809602.1| prolyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229505518|ref|ZP_04395028.1| prolyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510812|ref|ZP_04400291.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229517932|ref|ZP_04407376.1| prolyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229608537|ref|YP_002879185.1| prolyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254848011|ref|ZP_05237361.1| prolyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255744669|ref|ZP_05418620.1| prolyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262161198|ref|ZP_06030309.1| prolyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262168701|ref|ZP_06036396.1| prolyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|81858145|sp|Q9KTM7|SYP_VIBCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172047427|sp|A5F340|SYP_VIBC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782925|sp|C3LTC5|SYP_VIBCM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|9655329|gb|AAF94037.1| prolyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550088|gb|EAX60104.1| prolyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121629396|gb|EAX61826.1| prolyl-tRNA synthetase [Vibrio cholerae V52]
 gi|126510449|gb|EAZ73043.1| prolyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126519409|gb|EAZ76632.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|146315041|gb|ABQ19580.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227008939|gb|ACP05151.1| prolyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|227012695|gb|ACP08905.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229344647|gb|EEO09621.1| prolyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229350777|gb|EEO15718.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229357741|gb|EEO22658.1| prolyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229371192|gb|ACQ61615.1| prolyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254843716|gb|EET22130.1| prolyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255737700|gb|EET93094.1| prolyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262022819|gb|EEY41525.1| prolyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262028948|gb|EEY47601.1| prolyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
          Length = 571

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 546 YKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|256850831|ref|ZP_05556220.1| threonyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260661042|ref|ZP_05861956.1| threonyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|256615893|gb|EEU21081.1| threonyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260547979|gb|EEX23955.1| threonyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
          Length = 643

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 165/442 (37%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 228 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M    D  D  M+   P +      +++ HI+SY
Sbjct: 288 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    E  +  + K+    + +
Sbjct: 348 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LEQVQEEFAKILKLIMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D   T  + + D M            D + 
Sbjct: 407 YKDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLG 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 453 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----DLSYVG 502

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++H   M   G +G M    A +   + G    W   +AP ++ +I +        +
Sbjct: 503 QDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPEQVEIIPVNL--DAHGE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L K G     D   E++G +   +     P  +++G   ++ + V ++   T
Sbjct: 558 YAKKVRDELLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVLGDDEMNSNAVNVRPYGT 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +E MSL++ I+       + 
Sbjct: 618 EKQESMSLDKFIDELQADVDSY 639


>gi|300361194|ref|ZP_07057371.1| threonine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300353813|gb|EFJ69684.1| threonine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 643

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 163/443 (36%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I +++   G
Sbjct: 227 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 287 YEHVYTPVLMNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 347 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQIREEFAKVLKLIMD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M     S      D +
Sbjct: 406 VYKDFDITDYYFRLSYR--------------DPKNTDKYYANDEMWEKSQSMLKAAMDDL 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 452 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 501

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP +  +I +   ++   
Sbjct: 502 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVN--EEAHG 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +K+   L+K G     D   E++G +   +     P  +++G   ++ + V ++   
Sbjct: 557 AYADKVREELAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDDEMNANGVNVRRYG 616

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +   SL++ I        + 
Sbjct: 617 TEEQISKSLDDFIAEIDADVKSY 639


>gi|302121711|gb|ADK92877.1| threonyl-tRNA synthetase [Hypericum perforatum]
          Length = 721

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 145/446 (32%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G      +    ++  
Sbjct: 310 QLKAYLHFKEEAKRRDHRRLGQDLDLFS-IQDEAGGGLVFWHPKGAIVRHIIEDAWKKMH 368

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  
Sbjct: 369 IANGYELLYTPHVAKADLWKISGHLDFYRENMFEQMKIEDEQYQLRPMNCPYHILIYKRK 428

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 429 QNSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 487

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I    G     +   + P       E    A          K +             
Sbjct: 488 TEEILLLFGFSRYEVNLSTRPEKAVGGDEIWDKATNALRNALDDKGWDYEIDEGGG---- 543

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D+L    + S   ++    F    ++      
Sbjct: 544 ----------------AFYGPKIDLKIEDALGRKWQCSTIQVD----FNLPQRF----DI 579

Query: 301 TFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+  A   K   + +    +G++     V+   + G   +W   + P ++ ++ +  +  
Sbjct: 580 TYVDATSEKKRPILIHRAVLGSLERFFGVLIEHYAGDFPLW---LTPIQVRVLPVTDN-- 634

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C ++  +L   G        GE++      A+    PL  +VG K V    V ++
Sbjct: 635 -QLEFCNEVTRKLKDSGVRAEV-CHGERLPKLIRNAEKQKVPLMAVVGPKEVETQTVTVR 692

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R +G    + +++ I+         
Sbjct: 693 SRSSGDVGTIDIDDFISRIKSTVEER 718


>gi|298499001|ref|ZP_07008808.1| prolyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|297543334|gb|EFH79384.1| prolyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 571

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEKNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 546 YKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|289579170|ref|YP_003477797.1| prolyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528883|gb|ADD03235.1| prolyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 570

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 157/241 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+ KM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFEKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 D 241
           +
Sbjct: 241 N 241



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/185 (39%), Positives = 99/185 (53%), Gaps = 3/185 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG
Sbjct: 386 KNVIEGDKCPRCGSPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIVMGCYGIG 445

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VAA+IE +HD KGIIWP SVAP+ + ++ +   ++      E IYA L K G +V 
Sbjct: 446 INRTVAAIIEQNHDDKGIIWPMSVAPYHVIIVPVNVSNEAQNGVAEDIYAALQKEGIEVL 505

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD   + G +F  ADLLG P+++ VG K V D  VEIK R     E++ + +V+    +
Sbjct: 506 IDDRDLRAGVKFNDADLLGIPIRITVGKK-VGDGIVEIKLRENEEAEEVKISDVVEKVKN 564

Query: 441 RFSNN 445
                
Sbjct: 565 IIKEK 569


>gi|255030222|ref|ZP_05302173.1| prolyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 505

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 163/285 (57%), Gaps = 1/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S               +
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEMAPVLY 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  S     +           + +   F  +P  K + +   +V
Sbjct: 241 MEKKSHELEKDLEKVATPDQKSITDIVGFLEVPIEKTMKSMLYQV 285



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           KD ++  + +    F  I          T+ +        +   D     K     GIEV
Sbjct: 351 KDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGVIKFAE--GIEV 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G +W   +
Sbjct: 409 GHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGFVWDKQI 468

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +PF + LI +    +      E +Y  L   G  V  
Sbjct: 469 SPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFSVLI 505


>gi|118602380|ref|YP_903595.1| prolyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|152016598|sp|A1AW17|SYP_RUTMC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118567319|gb|ABL02124.1| prolyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 559

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K  +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V  IIR+E
Sbjct: 1   MKTTKLLIPTQKEVPNDAQIISHQLMIRAGLISKLASGLYSYLPMGVRVLHKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW  SGR+D YG E+LR  DR+ +    GPTHEEV+T +   
Sbjct: 61  MNKSGAQEVFMPVVQPAELWKTSGRWDKYGTELLRFTDRHQREFCLGPTHEEVITHLAAQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L     + +Y+ M+ +
Sbjct: 121 YLRSYKQLPMNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLDQYSLQQTYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RL L    + A+SG IGGD SHEF VLA++GE  +  S +     
Sbjct: 181 YCNIFDRLSLDYHAVLADSGSIGGDASHEFHVLAESGEDTICFSDESNYAA 231



 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           + +    DF   +   D+     L S+  Q      A      E  +    + K +  RG
Sbjct: 342 YSASVLCDFVCGANEWDYH----LMSVNWQGIEFVDADLRSAVEGDYSPDGKGKLIIKRG 397

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  GTKYS  M     G  GK     MG YGIG  R++AA IE ++D KGII+P
Sbjct: 398 IEVGHIFQLGTKYSSAMKVNVIGESGKAITTTMGCYGIGVTRIIAASIEQNYDDKGIIFP 457

Query: 342 DSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            ++APF++ ++ I        +   +K+Y +    G +V  DD  E+ G  FA ++LLG 
Sbjct: 458 QAIAPFQVVIVPINYNKSTRVKALSDKLYQQFIGAGIEVLLDDRKERAGIMFADSELLGI 517

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           P ++++      +  VE K R    +  M  ++ +++   + 
Sbjct: 518 PHRMVISDTHADNGNVEYKARDKIDKMQMKFDDALSFIQFKL 559


>gi|328876049|gb|EGG24413.1| threonyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 786

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 161/459 (35%), Gaps = 48/459 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           S   L + +E    A    H+ + R       H +S G   +LP G K  + + + +R E
Sbjct: 360 SNSQLDLFREQQELAAQLDHRNIGREQELFFFHPYSPGSCFFLPHGAKVYNKLLSFLRGE 419

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P + S  LW  SG + +Y   M      +       P +      ++  
Sbjct: 420 YRRRGYQEVITPNIYSQKLWEVSGHWQNYKDNMFSFQCDHTTYS-LKPMNCPGHCLMYAH 478

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SY+ LP  +    +  R+E      G+ R R F   DA+ F  T +  +        
Sbjct: 479 RVRSYKELPMRYADFGVLHRNETHGSLTGLTRVRRFQQDDAHIFCRT-DQIEEEMRACLD 537

Query: 180 SYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   G     +   + P  G     +    A+    QV        + +   +  
Sbjct: 538 FLQYVYRVFGFTF-SLELSTRPKEGYLGDLDTWNRAENALEQVLNESFRGHWRLNEGDGA 596

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F                        +  + D+   + + +   ++    F    +++L  
Sbjct: 597 FYG-------------------PKIDIHIKDANGRSHQCATIQLD----FQLPQRFNLEF 633

Query: 299 ---------SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                      +       +  V +     G+   + A++     GK   WP  ++P ++
Sbjct: 634 TTSGVAETDDPSALAPSKFERPVMIHRAIFGSTERMLAILIEHTKGK---WPFWLSPRQV 690

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGS 408
            + +I        +  EKI   L   G +V  D    + I  +   A +L +   ++VG+
Sbjct: 691 LVTSIG---DAHNEYAEKIRQDLHLAGYEVDIDTSAHKTIKKKLRDAIILKYNYVIVVGN 747

Query: 409 KFVSDSKVEIKHRLTGIR-EDMSLEEVINYASHRFSNNR 446
           + V+++ V ++ R      + MSL  +++    +  N +
Sbjct: 748 EEVTNNTVSVRRRDGDSTPQSMSLSSLLDELQIKTDNYQ 786


>gi|46907545|ref|YP_013934.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093943|ref|ZP_00231680.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|254824622|ref|ZP_05229623.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852630|ref|ZP_05241978.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|255522074|ref|ZP_05389311.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
 gi|300765441|ref|ZP_07075423.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|81830231|sp|Q720A3|SYP_LISMF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46880813|gb|AAT04111.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017681|gb|EAL08477.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|258605946|gb|EEW18554.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|293593860|gb|EFG01621.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300513878|gb|EFK40943.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|328468602|gb|EGF39602.1| prolyl-tRNA synthetase [Listeria monocytogenes 1816]
          Length = 568

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 163/285 (57%), Gaps = 1/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S               +
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEMAPVLY 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  S     +           + +   F  +P  K + +   +V
Sbjct: 241 MEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQV 285



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 340 ENTRVFADNAVKDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W   ++PF + LI +    +      E +Y+ L   G  V  DD  E+ G +FA A
Sbjct: 460 NGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYSSLQDAGFSVLIDDRAERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 520 DLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|229180095|ref|ZP_04307439.1| Prolyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228603304|gb|EEK60781.1| Prolyl-tRNA synthetase [Bacillus cereus 172560W]
          Length = 566

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|89344805|gb|ABD69008.1| prolyl-tRNA synthetase [Rhodoferax ferrireducens T118]
          Length = 600

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R GMI +   GIYS +P+G + +  V  I+REE
Sbjct: 21  MKASQFFISTLKEAPADAEVVSHKLMTRAGMIKKLGAGIYSLMPMGLRVVRKVEQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++S G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 81  MNRAGAVELVMPVVQPAELWQETGRFESNGPELLRIKDRHGRDFVVQPTSEEVVTDIARQ 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 141 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQASAKASYQVMAAA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 201 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 244



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              +  D         +     A  +D+ N    D+ P+ +      RGIE+GH+FY GT
Sbjct: 388 CGANEPDFHITGVNWGRDLPEPALVADLRNVVAGDASPDGQGVLAIERGIEIGHVFYLGT 447

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF   +GK  +++MG YGIG  R+ AA IE +HD +GIIWPD++APF + L 
Sbjct: 448 KYSQAMNATFLDVNGKPQFMEMGCYGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVLC 507

Query: 353 NIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I        + A +K+YA L   G DV  DD GE+ G+ FA  +L+G P +V +G + +
Sbjct: 508 PISPERFPDVKAASDKLYAELLAAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGL 567

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +VE +HR       + +  + +    +  
Sbjct: 568 KAGEVEYQHRRDSAATTVGVTAIFSLLQAKLK 599


>gi|220931621|ref|YP_002508529.1| prolyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|254782904|sp|B8CW65|SYP_HALOH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219992931|gb|ACL69534.1| prolyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 568

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 109/278 (39%), Positives = 166/278 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P++AE+ SH+LMLR G+I   + G+YS+LPLG + +  +  IIR+ 
Sbjct: 1   MRMSNLYIPTLKEVPKEAEVVSHQLMLRAGLIRNLTAGVYSFLPLGYRVIKKIEGIIRKV 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +P + ++DLW ESGR++ +G  M++  DR  +    GPTHEEV+TD+ R 
Sbjct: 61  MDESGAQEVLMPVIHTSDLWKESGRWEKFGPLMIKFEDRKGREYCLGPTHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP   YQIQ K RDE+RPRFG+MRSREF+MKDAYSFD   EG   SY  M+ +
Sbjct: 121 EIRSYKDLPLNLYQIQTKVRDEIRPRFGLMRSREFIMKDAYSFDRDYEGLDKSYQVMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+R GL+   + A++G +GG  SHEF+VLA++GE  +                   
Sbjct: 181 YTEVFNRCGLEVRAVEADTGAMGGKDSHEFMVLAESGEDDIAFCNRCDYAANVERAEARY 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                N  ++             +E +      ++++ 
Sbjct: 241 VKSEKNEEIKPLEKVETPGKKKIDELVEFLKMPSEKMI 278



 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 3/217 (1%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFY 289
           +       ++     ++  +         D+   K  D  P  +       GIEVGHIF 
Sbjct: 353 VNGICGANEENYHFINVNPERDFSVEKYLDIRKVKEGDQCPHCEGTIEIKSGIEVGHIFK 412

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  M AT+   +GK+  + MGSYGIG  R+VAA IE +HD  GIIWP ++AP+++
Sbjct: 413 LGTKYSESMGATYLDENGKEQPIVMGSYGIGVTRLVAAAIEQNHDEHGIIWPKAIAPYQV 472

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ +   D+      E++Y  L     +V  DD  E+ G +F  ADL+G PL++ +GS+
Sbjct: 473 IILPLGKGDE-VNKRAEELYLELKDNNIEVLLDDRNERAGVKFNDADLIGIPLRLTIGSR 531

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +    +E + R TG   ++S+E+ I        N +
Sbjct: 532 SLDKGVIEARVRGTGQDYEISVEDAIKDIKKLLENVK 568


>gi|256830760|ref|YP_003159488.1| threonyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256579936|gb|ACU91072.1| threonyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 644

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 150/443 (33%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +++E   RD      +L L +    +   G+  W P G      +   + +E
Sbjct: 224 KELKAHLAMIEEAKKRDHRKLGPQLDLFSFH-ERGGAGMAYWHPKGGLVRTILEDFVNKE 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G   +  P +   DLW  SG Y +Y + M    + ++      P +      I+ +
Sbjct: 283 MIRRGYGIVRTPQILKRDLWETSGHYANYRENMY-FTEIDEVPYGVKPMNCVAHMLIYNT 341

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP   ++  +  R EL     G+MR R+F   DA+     P+        +  
Sbjct: 342 SQRSYRDLPVRLFEFGVVHRHELSGVLHGLMRVRQFTQDDAHII-CRPDQLLDEIKGVMT 400

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +    G +   M   + P     S      A +         +        +    
Sbjct: 401 WIQDLMGVFGFEY-SMEISTRPEKSIGSDADWERATSALMDAMGQMELPYTINEGDG--- 456

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + KL D L    + S   ++    F    ++     
Sbjct: 457 -----------------AFYGPKIDVKLRDCLGRQWQCSTIQVD----FTLPDRF----D 491

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DG+ H   M     +G++     ++     G    W   +AP +  ++ +  + 
Sbjct: 492 LLYVGEDGERHRPVMVHRAIMGSVERFIGILTEHFAGAFPAW---LAPVQARILTVTDN- 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   K    L + G  V  D   E++G +   A +   P  +++G + V  + V +
Sbjct: 548 --HDEFARKCQDALQREGVRVELDLRNEKLGYKVREAQMEKVPYALVIGDQEVEQACVNV 605

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +         MS++   ++    
Sbjct: 606 RMLGGNNLGVMSVDAFADHLRQE 628


>gi|172087674|ref|YP_204065.3| prolyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|59479390|gb|AAW85177.1| prolyl-tRNA synthetase [Vibrio fischeri ES114]
          Length = 575

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 5   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 65  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 125 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDINKEGLQKSYDAMHDA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 185 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 228



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +            D+ N    D  P  K      RGIEVGHIF  GT YS  M
Sbjct: 370 DGKHFFGVNWDRDVQLGQVEDLRNVVEGDPSPCGKGTLQLKRGIEVGHIFQLGTAYSEAM 429

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     A+GK+  ++MG YGIG  RVVA+ IE ++D  GI+WP+++APF ++++ +  H 
Sbjct: 430 NCGVLDANGKNVILEMGCYGIGVSRVVASAIEQNNDEYGIVWPEAIAPFTVAIVPMNMHK 489

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+G P  +++G + + +   E
Sbjct: 490 SERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGDRSMDEGHFE 549

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R    +E + +  ++ +   + S
Sbjct: 550 YKNRRANTKEAVEMANIVEHIKAQLS 575


>gi|226313026|ref|YP_002772920.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|254782888|sp|C0ZF57|SYP_BREBN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226095974|dbj|BAH44416.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 581

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 130/364 (35%), Positives = 198/364 (54%), Gaps = 9/364 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAEIASHKL+LR GM  Q + GIY++LPL  ++L  + AI+REE
Sbjct: 1   MKQSQMLIPTLREVPSDAEIASHKLLLRAGMARQLASGIYTYLPLALRSLHKIQAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q A+LW ++GR+D YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNNAGGQELLMPAMQPAELWHQTGRWDVYGPELVRLRDRHDRPFALGPTHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG++R REF+MKDAYSFD + +G   ++  M+ +
Sbjct: 121 EINSYKKLPINLYQIQTKFRDEVRPRFGLIRCREFIMKDAYSFDTSQDGLDRNFQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A++G IGG  ++EF+ L D GE  +  S++         N +  
Sbjct: 181 YTNIFTRVGLNFRAVEADAGAIGGKGTYEFMALCDIGEDTIAYSEEGDFAA----NLEKA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM-- 298
           +++   S      AP          K  D L +  ++ A+ I    I+    K  + +  
Sbjct: 237 EVVYKPSAKPATEAPAREKLHTPGIKTIDQLVQALQIEAKQIIKSLIYRVDDKLVMVLVR 296

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                      +       G+ +    A ++  +    G + P  + P K+ +I      
Sbjct: 297 GDHEINEVKLKNLYDATIVGLASE---ADIVSVTGAPAGFVGPVGIDPEKVDIIADNFVQ 353

Query: 359 QVCR 362
            V  
Sbjct: 354 DVYD 357



 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 72/183 (39%), Positives = 102/183 (55%), Gaps = 2/183 (1%)

Query: 263 HNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P    V    RG+EVGH+F  GTKYS  M AT+   +G+   + MG YGIG
Sbjct: 387 RNITEGDECPRTGGVIKFARGVEVGHVFKLGTKYSTAMGATYLDENGRSQPMIMGCYGIG 446

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AAVIE ++D  GIIWP SVAPF + +I +    +  R A E+I   L K G +V 
Sbjct: 447 VSRTIAAVIEQNNDENGIIWPVSVAPFHVHVIPVNVKVEEQRQASEQITEALRKAGIEVL 506

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +DD  E+ G +F  ADL+G PL++ V  K   +  VE++ R  G   D+ L+++++    
Sbjct: 507 FDDRPERAGVKFKDADLIGLPLRITVSDKAAQEGTVEVRIRKNGETHDVKLDQLVDEVKG 566

Query: 441 RFS 443
             S
Sbjct: 567 ILS 569


>gi|229117305|ref|ZP_04246683.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228666205|gb|EEL21669.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-3]
          Length = 566

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSNYAA 231



 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  + IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGKNIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|229129095|ref|ZP_04258068.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229146390|ref|ZP_04274761.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|296504314|ref|YP_003666014.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|228637023|gb|EEK93482.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228654332|gb|EEL10197.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|296325366|gb|ADH08294.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 566

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|282934500|ref|ZP_06339755.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|281301447|gb|EFA93736.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 644

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 165/442 (37%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 229 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M    D  D  M+   P +      +++ HI+SY
Sbjct: 289 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    E  +  + K+    + +
Sbjct: 349 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LEQVQEEFAKILKLIMDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D   T  + + D M            D + 
Sbjct: 408 YKDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLG 453

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 454 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----DLSYVG 503

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++H   M   G +G M    A +   + G    W   +AP ++ +I +        +
Sbjct: 504 QDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPEQVEIIPVNL--DAHGE 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L K G     D   E++G +   +     P  +++G   ++ + V ++   T
Sbjct: 559 YAKKVRDELLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVLGDDEMNSNAVNVRPYGT 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +E MSL++ I+       + 
Sbjct: 619 EKQESMSLDKFIDELQADVDSY 640


>gi|299140628|ref|ZP_07033766.1| threonine--tRNA ligase [Prevotella oris C735]
 gi|298577594|gb|EFI49462.1| threonine--tRNA ligase [Prevotella oris C735]
          Length = 649

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 161/458 (35%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KLLDEYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRSL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +    L+V SG Y  YGK+  +       D+  +  P +     +++
Sbjct: 287 LRPYNYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 ARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKAEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F      +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFKTFQFDNYEAQISLR--------------DPKDKEKYIGSDEIWEESQNAIR 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +      L                   E    +    K        +G  +  GT    Y
Sbjct: 452 EACKEKGL---------------VAREEIGEAAFYGPKLDFMVKDAIGRKWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPARFKLEYTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  +++      VG     DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYAKQVSKYFDSVGVRAVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++  V ++ +  G +  M +EE  N  +   ++    L
Sbjct: 611 AEGLVSMRKQGGGEQATMKMEEFANRINAEVADMLKTL 648


>gi|281423114|ref|ZP_06254027.1| threonine--tRNA ligase [Prevotella oris F0302]
 gi|281402450|gb|EFB33281.1| threonine--tRNA ligase [Prevotella oris F0302]
          Length = 649

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 161/458 (35%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KLLDEYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRSL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +    L+V SG Y  YGK+  +       D+  +  P +     +++
Sbjct: 287 LRPYNYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 ARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKAEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F      +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFKTFQFDNYEAQISLR--------------DPKDKEKYIGSDEIWEESQNAIR 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +      L                   E    +    K        +G  +  GT    Y
Sbjct: 452 EACKEKGL---------------VAREEIGEAAFYGPKLDFMVKDAIGRKWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPARFKLEYTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  +++      VG     DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYAKQVSKYFDSVGVRAVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++  V ++ +  G +  M +EE  N  +   ++    L
Sbjct: 611 AEGLVSMRKQGGGEQATMKMEEFANRINAEVADMLKTL 648


>gi|229523326|ref|ZP_04412733.1| prolyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229339689|gb|EEO04704.1| prolyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
          Length = 571

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKTGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAFS 224



 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +E +++  +I++   + +
Sbjct: 546 YKNRRSGEKEAVAMASIIDFIQAKLA 571


>gi|228922573|ref|ZP_04085873.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837002|gb|EEM82343.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 566

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMIFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDTSDYAA 231



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +        +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVNQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|320093816|ref|ZP_08025661.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979249|gb|EFW10747.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 669

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 154/449 (34%), Gaps = 31/449 (6%)

Query: 3   RSKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
            SK  L   QE  ++AE   H+     L L +    +   G+  + P G      +   +
Sbjct: 234 ASKDDLVAYQERLKEAERRDHRRLGAELDLFS-FPEEIGPGLPVFHPKGGVLKRVMEDYV 292

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           RE     G   +  P +  A+L+  SG    Y   M    D   +A      +  +   I
Sbjct: 293 REAHIANGFQYVGTPHISKAELFHTSGHLPYYADGMFPPMDDEGQAYYLKAMNCPMHNLI 352

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FRS  +SYR LP  F++    +R+E      G+ R R     D++S+  TPE +      
Sbjct: 353 FRSRGRSYRELPLRFFEFGTVYRNEKSGVLQGLTRVRSITQDDSHSY-CTPEQAPGEVRH 411

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    G++   +   +    G    +FI   +          D          
Sbjct: 412 LLTFVLTLLKDFGMEDFYLEVSTRDEDGAKKDKFIGSDEQWADATRILADIAAECAQENG 471

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               D               A      + +  D++    ++S    +      FG +Y+ 
Sbjct: 472 LRVVDDPGGA----------AFYGPKISVQAKDAIRRTWQMSTIQYDFNQPHRFGLEYTA 521

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              A       +   V + S   GA+     V+   + G    W   +AP ++ L+ + +
Sbjct: 522 ADGA-------RHEPVMIHSAKFGAIERFIGVLTEHYAGAFPAW---LAPVQVRLVPVAS 571

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E++ A+L + G  V  D   ++ G +   A     P  +I G +      V
Sbjct: 572 ---AFDDYVEEVAAKLRERGIRVETDLSDDRFGKKIRNAAKEKVPFTLIAGGEDAEAGAV 628

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + R       + ++  +   +   ++ 
Sbjct: 629 SFRLRDGSQHNGIPVDRAVELIARHVASR 657


>gi|226223920|ref|YP_002758027.1| prolyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|259511604|sp|C1L2M5|SYP_LISMC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225876382|emb|CAS05091.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 568

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 163/285 (57%), Gaps = 1/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S               +
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEMAPVLY 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  S     +           + +   F  +P  K + +   +V
Sbjct: 241 MEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQV 285



 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 340 ENTRVFADNAVKDIVNAVVGANEDGFHYINVKPDRDFSVTSYFDLRMIQVGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W   ++PF + LI +    +      E +Y+ L   G  V  DD  E+ G +FA A
Sbjct: 460 NGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYSSLQDAGFSVLIDDRAERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 520 DLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|52632425|gb|AAH10578.2| Threonyl-tRNA synthetase [Homo sapiens]
          Length = 723

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 151/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G++R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLIRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 631 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 691 RDNKVHGERTISETIERLQQL 711


>gi|242046134|ref|XP_002460938.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
 gi|241924315|gb|EER97459.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
          Length = 648

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 153/446 (34%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K ++   +E  R D       L L + +      G+  W P G      +    ++  
Sbjct: 237 QLKAYIHFKEEAKRRDHRRLGQDLDLFS-IQDDAGGGLVFWHPKGAIIRHILEDSWKQIH 295

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P +  ADLW  SG  D Y + M    D  D+     P +      +++  
Sbjct: 296 LQHGYDLLYTPHVAKADLWKISGHIDFYKESMYNQMDVEDEMYQLRPMNCPYHILVYKRK 355

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 356 LHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 414

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +I  + G +   +   + P     + +    A          K +             
Sbjct: 415 TEQILGQFGFRYYEINLSTRPEKSVGTDDIWEKATIALKNALDDKGWEYKVDEGGG---- 470

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D+L    + S   ++    F    ++      
Sbjct: 471 ----------------AFYGPKIDLKIEDALGRKWQCSTVQVD----FNLPERF----DI 506

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+  ++  K   + +    +G++     V+   + G   +W   +AP +  ++ +  ++ 
Sbjct: 507 TYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHYAGDFPLW---LAPTQARILPVTDNE- 562

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                C ++ + L   G  V     GE++      A+    PL  +VG K V    + I+
Sbjct: 563 --LQYCNEVASELKSRGLRVEV-CHGERLPKLIRNAETQKVPLMAVVGPKEVQARTLTIR 619

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G    M ++E I       +N 
Sbjct: 620 SRHNGEIGTMPVDEFITRLQLAVANK 645


>gi|229162755|ref|ZP_04290712.1| Prolyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228620637|gb|EEK77506.1| Prolyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 566

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSNYAA 231



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY+ L + G +V  DD  E+ G +FA
Sbjct: 458 DESGLVWPKAVAPFHVHVIPVNMKSDAQREMGESIYSSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|227501051|ref|ZP_03931100.1| threonine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227216824|gb|EEI82222.1| threonine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 667

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 153/443 (34%), Gaps = 42/443 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E  ++ E   H+ + R       H+   G   + P G   ++ +     +  N  
Sbjct: 256 LEEYEELQKEIEKRDHRKIGREMNLFAFHEEGPGFPFFHPNGMILMNELLVWWTDVLNNN 315

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW  SG +D Y + M      + +A    P +       + ++  S
Sbjct: 316 GYGEIKTPLILNEALWHRSGHWDHYKENMY-FTKIDGEAYAVKPMNCPGSVLTYAANQHS 374

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R EL     G+ R R F   DA+ + + P   K    KM      
Sbjct: 375 YRDLPIRLAEYGQVHRHELSGTLHGLFRVRTFTQDDAHVYCM-PSQIKEEVYKMIDLADL 433

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P       +    A+    +    +       P +        
Sbjct: 434 LYSTFGFKY-TIELSTRPDDFMGEIKDWDFAEDQLKKALEERGIEYEINPGDG------- 485

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  L D+     +     ++    F     +      T+ 
Sbjct: 486 -------------AFYGPKIDFHLLDAAKREWQCGTIQLD----FQLPQNF----DLTYI 524

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +G K     +    +G++     V+     G+  +W   + P ++ +I +        
Sbjct: 525 DENGEKKRPAMLHRALLGSIERFIGVLTEHFAGRFPLW---LNPQQVEIIPV---SDKYI 578

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++  ++ K G  V  D   E +G +   A L+     ++VG K  +  K+ +++R 
Sbjct: 579 PYAEELKEKIKKAGYRVNIDYRSEGVGYKIRQAQLMRTNYMLVVGEKEENSGKLTVRNRD 638

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                D+SLEE I   +   ++ 
Sbjct: 639 AKETPDVSLEEFIEKLNEEKASK 661


>gi|254468329|ref|ZP_05081735.1| prolyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087139|gb|EDZ64422.1| prolyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 561

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P+DAE+ SH+LM+R G + + S G+Y+W+P+G + L  + +IIREE
Sbjct: 1   MKTSQFFISTLKEAPQDAELKSHQLMVRAGYVKRLSSGLYTWMPIGLRVLRKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+  +G +ML++ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNASGAVELLMPAIQPAELWQETGRWQQFGPQMLKINDRHQNEFCFGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF       +  Y  MF +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHANENCLQKMYELMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL+   + A+SG IGGD SHEF VLAD+GE  +  S       
Sbjct: 181 YNRIFSRIGLQFRSVAADSGAIGGDASHEFHVLADSGEDVIAYSDQSEYAA 231



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGI 282
           K F    I  EN                +       D+ N    D  P+   K    RGI
Sbjct: 341 KLFDHSIIEMENMVCGANEEHYHFTNFQSINTEKFVDITNVVEGDVSPDESGKLKFCRGI 400

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGHIF  G KYS  M A+    +GK   + MG YGIG  R+VAA IE ++D  G+I P 
Sbjct: 401 EVGHIFQLGKKYSESMQASILNEEGKSQTMTMGCYGIGVSRIVAAAIEQNNDENGMILPK 460

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           S+APF++ ++ I  H +   R    KIYA L K G DV  DD   + G  FA +DL+G P
Sbjct: 461 SIAPFELIIVPIGYHKNDKVRAQANKIYADLLKSGIDVILDDRVARPGIMFAESDLIGIP 520

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ++++G K ++++KVE K R     E +++ ++I++   + 
Sbjct: 521 NRLVIGEKSLNENKVEFKSRSESNSEMINISDLIHFIKSKI 561


>gi|47096944|ref|ZP_00234521.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|47014704|gb|EAL05660.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
          Length = 502

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 163/285 (57%), Gaps = 1/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S               +
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEMAPVLY 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  S     +           + +   F  +P  K + +   +V
Sbjct: 241 MEKKSHELEKDLEKVATPDQKSITDIVEFLEVPIEKTMKSMLYQV 285



 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 2/153 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           KD ++  + +    F  I          T+ +        +   D     K     GIEV
Sbjct: 351 KDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGVIKFAE--GIEV 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G +W   +
Sbjct: 409 GHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGFVWDKQI 468

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           +PF + LI +    +      E +Y  L   G 
Sbjct: 469 SPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGF 501


>gi|302342263|ref|YP_003806792.1| threonyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301638876|gb|ADK84198.1| threonyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 627

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 150/442 (33%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L +    +   G+  W   G      +    R E  R
Sbjct: 216 KQYLHMLEEAKKRDHRKLGKELDLFSFH-EEIGPGMVVWHNRGMMLRMVLEDFERREHLR 274

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L   +LW  SG YD+Y + M    + +  A    P +      I++S + 
Sbjct: 275 RGYQIVQGPQLLKRELWERSGHYDNYRENMY-FTEVDGTAYGVKPMNCLAHMLIYKSKMH 333

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP   +++    R E     G + R R F   DA+     P+  +     +     
Sbjct: 334 SYRDLPIRMFELGTVHRHEKSGVLGGLTRVRAFTQDDAHIL-CRPDQLEGEIMGVMDFVG 392

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G     M   + P     S E    A     +   +          +   +   
Sbjct: 393 EVMAIFGFDY-GMELSTRPDKSIGSDEDWERATNALRKALEASGRPYEINEGDGAFYGPK 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
           I                               K    R  +   I   F    ++ L   
Sbjct: 452 IDFKL---------------------------KDALGRQWQCATIQCDFTLPERFDLTYI 484

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A     D +   V +    +G++     V+   + G+   W   +AP +  ++ +    +
Sbjct: 485 AP---DDSRQRPVMIHRVILGSLERFIGVLIEHYAGRFPFW---LAPEQARVLTVT---E 535

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   +++A L   G  V  D   E++G++   A LL  P  +++G + V + +V  +
Sbjct: 536 RADDWAREVFAALKNAGYRVEMDLRNEKLGAKVREAQLLKVPYMLVIGDREVDERQVAPR 595

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R       + L  ++   + +
Sbjct: 596 LRSGKNLPPLDLAGLLALFAEQ 617


>gi|290893569|ref|ZP_06556552.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|290556914|gb|EFD90445.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
          Length = 568

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 149/235 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S           
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEM 235



 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E+    + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 340 ESTRVFADNAVKDIVNAVVGANEDGFHYINVNADRDFTVTSYFDLRMIQVGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W   ++PF + LI +    +      E +Y  L   G  V  DD  E+ G +FA A
Sbjct: 460 NGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQGAGFSVLIDDRAERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 520 DLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|162289255|ref|YP_522539.2| prolyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|114152240|sp|Q21YZ5|SYP_RHOFD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 580

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R GMI +   GIYS +P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGMIKKLGAGIYSLMPMGLRVVRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++S G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELVMPVVQPAELWQETGRFESNGPELLRIKDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQASAKASYQVMAAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              +  D         +     A  +D+ N    D+ P+ +      RGIE+GH+FY GT
Sbjct: 368 CGANEPDFHITGVNWGRDLPEPALVADLRNVVAGDASPDGQGVLAIERGIEIGHVFYLGT 427

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF   +GK  +++MG YGIG  R+ AA IE +HD +GIIWPD++APF + L 
Sbjct: 428 KYSQAMNATFLDVNGKPQFMEMGCYGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVLC 487

Query: 353 NIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I        + A +K+YA L   G DV  DD GE+ G+ FA  +L+G P +V +G + +
Sbjct: 488 PISPERFPDVKAASDKLYAELLAAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGL 547

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +VE +HR       + +  + +    +  
Sbjct: 548 KAGEVEYQHRRDSAATTVGVTAIFSLLQAKLK 579


>gi|325269899|ref|ZP_08136509.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324987872|gb|EGC19845.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 649

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 160/458 (34%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDLLRRL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +++
Sbjct: 287 LRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + PE  K  +   
Sbjct: 347 AYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPEQVKTEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F   G  +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFKTFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESEAA-- 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
                           A          E    +    K        +G  +  GT    Y
Sbjct: 450 -------------IKQACEEKGLKARVELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPNRFKLEYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   K+ A L         DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYAFKVKAYLDAHNVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++  V ++ +  G +  M++E      +   ++    L
Sbjct: 611 AEGLVSMRQQGGGEQATMTMEAFAERINAEVADQLKTL 648


>gi|323489584|ref|ZP_08094811.1| prolyl-tRNA synthetase 1 [Planococcus donghaensis MPA1U2]
 gi|323396715|gb|EGA89534.1| prolyl-tRNA synthetase 1 [Planococcus donghaensis MPA1U2]
          Length = 567

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 116/225 (51%), Positives = 155/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+++  F+P L+E P DAE+ SH+L+LR G I Q++ GIYS+LPLG++ L  V  +IREE
Sbjct: 1   MKQTATFIPTLRETPADAEVRSHQLLLRAGFIRQNTSGIYSFLPLGKRVLQKVETVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                ++E+ +P LQ A+LW ESGR+ SYG E++RL DRND+    G THEEV+T + R 
Sbjct: 61  MEAANSVEIFMPALQQAELWQESGRWYSYGDELMRLKDRNDREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   +QIQ KFRDE RPRFG++R REFLMKDAYSF  T E    +Y+ M  +
Sbjct: 121 EIKSYKKLPLNLFQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHATTESLDETYDVMMQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF RLGL    + A+SG IGG  +HEF+VL++ GE  +  S 
Sbjct: 181 YTNIFTRLGLNFRAVIADSGAIGGKDNHEFMVLSEIGEDTIAYSD 225



 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 3/229 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   ++  +       +      ++         A  D+   +  D+ P+ +  
Sbjct: 340 EDIRLFADHAVENMVNGIAGANESGYHFKNVTPGKDFTVPAFHDLRFIQEGDASPDGQGT 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIEVGHIF  GT YS+P+  TF    GK     MG YGIG  RV+AAV E   D 
Sbjct: 400 IQFAKGIEVGHIFKLGTTYSIPLKGTFLNDQGKSMPYIMGCYGIGVSRVLAAVAEQFQDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G  WPD VAP+++ L+ +   D   R+  E++YA L +   +V  DD  E+ G +FA A
Sbjct: 460 NGFTWPDVVAPYEVHLVPVNVKDDTQRELGEELYALLKENRYEVLLDDRKERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           DL+G P+++ +G K  ++  +E+K R TG   + + +EV+      F  
Sbjct: 520 DLIGLPIRITIGKK-AAEGILEVKIRRTGETFEWTRDEVLEKIQQFFKK 567


>gi|229098288|ref|ZP_04229235.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228685186|gb|EEL39117.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 566

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSNYAA 231



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|328955488|ref|YP_004372821.1| prolyl-tRNA synthetase [Coriobacterium glomerans PW2]
 gi|328455812|gb|AEB07006.1| prolyl-tRNA synthetase [Coriobacterium glomerans PW2]
          Length = 576

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 107/227 (47%), Positives = 153/227 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  + P L+E+P +A++ SH+L+LR GMI + + GIYS+LPL  ++L  +  I+R+E
Sbjct: 5   MKMSNLYAPTLKEDPAEADLVSHRLLLRAGMIRKMASGIYSYLPLAWRSLKKIEEIVRDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E  +P L  A+LW  SGR+D+YG E++R+ DR+ +    GPTHEE +TD+ ++
Sbjct: 65  MDAIGAQECLLPILTDAELWRLSGRWDAYGPELMRIVDRHQRQFALGPTHEETVTDLVKN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP + YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T    +  Y  M  +
Sbjct: 125 ELASYRQLPVSLYQIQTKFRDEMRPRFGLMRGREFIMKDAYSFSATQASLQECYEDMKAA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  R GL ++P+ A+SG IGGD S E++ LAD+GE  +      
Sbjct: 185 YGRICERCGLAALPVAADSGQIGGDTSVEYMALADSGEASLVYCDSC 231



 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 82/192 (42%), Positives = 111/192 (57%), Gaps = 2/192 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+      D  P      +  RGIEV  +F  GTKYSLPM ATF    G+   + MG 
Sbjct: 382 WADLVTVVAGDPCPVCGEELSGARGIEVSQVFQLGTKYSLPMGATFTDEAGRTQPMLMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YG+G  R +AAV+E  HD  GIIWP SVAP+++S++ +    Q C  A +++   LS  G
Sbjct: 442 YGVGISRTLAAVVEQHHDEAGIIWPVSVAPYEVSIVLLDTKLQACVAAGDRLAFELSAGG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G +FA  DL+GFP Q+IVG + ++   VEIK R TG R D++L++  N
Sbjct: 502 IDVVLDDRAERPGVKFADNDLMGFPYQIIVGKRGIAAGTVEIKDRATGERVDVALDDASN 561

Query: 437 YASHRFSNNRPV 448
           YA  R    R V
Sbjct: 562 YAVERIRRARGV 573


>gi|228960035|ref|ZP_04121699.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799551|gb|EEM46504.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 566

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKAQLLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|47569097|ref|ZP_00239786.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47554259|gb|EAL12621.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 566

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GLK   + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLKFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DESGLVWPKAVAPFHVHVIPVNMKSDAQREMGESIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|218710332|ref|YP_002417953.1| prolyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|254782926|sp|B7VIT2|SYP_VIBSL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218323351|emb|CAV19528.1| prolyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 571

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 112/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S +     
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSSESDYAA 231



 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I        A   D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELAQVEDLRNVVEGDLSPCGQGTIQLKRGIEVGHIFQLGNTYSKAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK   ++MG YGIG  RVVA+ IE +HD  GI WPD++APF+++++ +  H 
Sbjct: 426 NCNVLGPDGKSVILEMGCYGIGVSRVVASAIEQNHDKFGITWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+G P  +++G + + +   E
Sbjct: 486 SERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELVGIPHTIVIGDRSMDEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +E ++++ VI +   + +
Sbjct: 546 YKNRRTGDKEAIAMDTVIEHLKAQLA 571


>gi|217964534|ref|YP_002350212.1| prolyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|254782905|sp|B8DG08|SYP_LISMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217333804|gb|ACK39598.1| prolyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|307570900|emb|CAR84079.1| proS [Listeria monocytogenes L99]
          Length = 568

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 149/235 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S           
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEM 235



 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 340 ENTRVFADNAVKDIVNAVVGANEDGFHYINVNADRDFTVTSYFDLRMIQVGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W   ++PF + LI +    +      E +Y  L   G  V  DD  E+ G +FA A
Sbjct: 460 NGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQGAGFSVLIDDRAERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 520 DLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|300087925|ref|YP_003758447.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527658|gb|ADJ26126.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 584

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 152/445 (34%), Gaps = 38/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD    + +L L          G+  + P   +    V    R+   
Sbjct: 168 LDEYLTSLAEAEARDHRRINKQLNLFV-TPEDVGGGLVIYGPKAGRIRTTVEEFWRKAHY 226

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ++LW  SG   +Y   M    D + +     P +       ++S +
Sbjct: 227 DHGYELLYTPHIGRSNLWETSGHLQNYRDIMYSPMDIDGQDYYVKPMNCPFHILFYKSQM 286

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  + ++   +R E      G++R R F   DA+    TPE  +   +++    
Sbjct: 287 RSYRDLPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHII-CTPEQIETEIDEVLRFS 345

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   + +   + P     +      A     +V  ++                
Sbjct: 346 FEMWRTFGFTDLKLFLATRPEKAIGTDLQWQQASDALRRVMDARGLEYSLDEGGG----- 400

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D L    +++    +    F    ++       
Sbjct: 401 ---------------AFYGPKIDIKVRDVLGREWQMTTIQFD----FNLPERF----DMV 437

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG++H    +    +G+      ++   + G   +W   + P +++++ I      
Sbjct: 438 YTGQDGQEHRPYMVHRALLGSWERFFGLLIEHYGGAFPVW---LHPEQVAVLPIA---DR 491

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  ++I A+L K G  V  DD  E +  +   A L   P  V++G K +    + ++ 
Sbjct: 492 HLEYAQEITAKLKKAGVRVALDDRSETVNMKIRQAQLDKIPYIVVIGDKELEKGTLAVRL 551

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R    +  +   + +          
Sbjct: 552 RTGQQKFGVPPNDFVTLIRQVIEER 576


>gi|115446545|ref|NP_001047052.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|50251985|dbj|BAD27919.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|50252661|dbj|BAD28830.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113536583|dbj|BAF08966.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|215765092|dbj|BAG86789.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623006|gb|EEE57138.1| hypothetical protein OsJ_07040 [Oryza sativa Japonica Group]
          Length = 674

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 153/449 (34%), Gaps = 42/449 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K ++   +E  R D       L L +  I +    G+  W P G      +    ++   
Sbjct: 264 KAYIHFKEEAKRRDHRRLGLDLDLFS--IQEDAGGGLVFWHPKGAIIRHVLEDSWKQIHL 321

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  A+LW  SG  D Y + M    D  D+     P +      +++  +
Sbjct: 322 QRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVEDELYQLRPMNCPYHILVYKRKL 381

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +  K     +    
Sbjct: 382 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDLT 440

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I  + G +   +   + P     S +    A          K +              
Sbjct: 441 EQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLALKDALEDKGWEYKVDEGGG----- 495

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D+L    + S   ++    F    ++      T
Sbjct: 496 ---------------AFYGPKIDLKIEDALGRKWQCSTVQVD----FNLPERF----DIT 532

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ++  K   + +    +G++     V+   + G   +W   +AP +  ++ +  ++  
Sbjct: 533 YVNSNSEKKRPIMIHRAILGSLERFFGVLIEHYAGDFPLW---LAPIQARILPVTDNE-- 587

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++ + L   G        GE++      A+    PL  +VG K V    + I+ 
Sbjct: 588 -LQYCNEVASELKSKGIRAEV-CHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRS 645

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R +G    M ++E         +N    L
Sbjct: 646 RHSGEIGTMPVDEFFRRIQLAIANKSSSL 674


>gi|16803359|ref|NP_464844.1| prolyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501738|ref|ZP_03670045.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|81849855|sp|Q8Y7G2|SYP_LISMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|16410735|emb|CAC99397.1| prolyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 568

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 163/285 (57%), Gaps = 1/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S               +
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEMAPVLY 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  S     +           + +   F  +P  K + +   +V
Sbjct: 241 MEKKSHELEKDLEKVATPDQKSITDIVGFLEVPIEKTMKSMLYQV 285



 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           KD ++  + +    F  I          T+ +        +   D     K     GIEV
Sbjct: 351 KDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGVIKFAE--GIEV 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G +W   +
Sbjct: 409 GHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGFVWDKQI 468

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +PF + LI +    +      E +Y  L   G  V  DD  E+ G +FA ADL+G P+++
Sbjct: 469 SPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFSVLIDDRAERAGVKFADADLIGLPIRI 528

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 529 TVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|295693387|ref|YP_003601997.1| threonyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295031493|emb|CBL50972.1| Threonyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 645

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 161/443 (36%), Gaps = 39/443 (8%)

Query: 12  QENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  R AEI    H+ + R   +     +   G+  W+P G      V   I + +   G
Sbjct: 228 EDLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y  +M    D  D  M+   P +      I++ HI+S
Sbjct: 288 YQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + 
Sbjct: 348 YRDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQTEFAKILKLIMD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D   T  + + D M            D +
Sbjct: 407 VYKDFDITDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDL 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+ +        A      + +   +L  ++ +S   ++      FG         T+ 
Sbjct: 453 GLDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LTYV 502

Query: 304 GADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H   M   G +G M    A +   + G    W   +AP ++ +I +        
Sbjct: 503 GQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQVEIIPVNL--DAHG 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L+K G     D   E++G +   +     P  +++G   +  + V ++   
Sbjct: 558 EYAEKVRQELAKRGFRAEVDTRNEKMGYKIRESQTQKVPYTLVLGDDEMKANGVNVRPYG 617

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T     MSL++ I        + 
Sbjct: 618 TDQENSMSLDDFIKEIDADVKSY 640


>gi|229104381|ref|ZP_04235050.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228679079|gb|EEL33287.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 566

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSNYAA 231



 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     +I  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNINPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|224499901|ref|ZP_03668250.1| prolyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 568

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 163/285 (57%), Gaps = 1/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S               +
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEMAPVLY 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  S     +           + +   F  +P  K + +   +V
Sbjct: 241 MEKKSHELEKDLEKFVTPDQKSITDIVEFLEVPIEKTMKSMLYQV 285



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           KD ++  + +    F  I          T+ +        +   D     K     GIEV
Sbjct: 351 KDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGVIKFAE--GIEV 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G +W   +
Sbjct: 409 GHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGFVWDKQI 468

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +PF + LI +    +      E +Y  L   G  V  DD  E+ G +FA ADL+G P+++
Sbjct: 469 SPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFSVLIDDRAERAGVKFADADLIGLPIRI 528

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 529 TVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|163803792|ref|ZP_02197646.1| prolyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159172411|gb|EDP57283.1| prolyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 571

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQIEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNVYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGVEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   +  
Sbjct: 546 YKNRRSGEKTAVAMTDIVEHVKAQLQ 571


>gi|283851379|ref|ZP_06368661.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283573329|gb|EFC21307.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 647

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 157/439 (35%), Gaps = 43/439 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L    ++  +A+   H+ +  +  +     +   G+  W P G+     +    R
Sbjct: 223 ASEADLKTYLKHLEEAKKRDHRKLGTQLDLFSFSEEVGAGMPIWHPKGELVRTILEDFER 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G   +  P +   +LW  SG YD+Y + M    + ++++    P +      I+
Sbjct: 283 REHLKRGYSLVRGPLILRRELWERSGHYDNYRENMY-FTEIDEQSYGIKPMNCLAHMLIY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S I+SYR+LP  ++++ +  R E      G++R R+F   DA+     P+        +
Sbjct: 342 KSRIRSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIL-CRPDQLLEEITGV 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +    G     +   + P     + E    A    T    S          +  
Sbjct: 401 IKFVQDVVGLFGFDY-EVELSTRPEKSIGADEDWERATKALTDALESLGLPYDINEGDG- 458

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      + KL D+L    + +    +    F    ++   
Sbjct: 459 -------------------AFYGPKIDIKLKDALERRWQCATVQCD----FTLPDRF--- 492

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +  ADG+    V +    +GA+     V+     G    W   +AP +  ++ +  
Sbjct: 493 -DLVYTDADGERKRPVMLHRVILGAVERFLGVLIEHTAGALPTW---LAPVQARILIVT- 547

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                ++  E+  ARL + G     DD  E++G +   A +   P  ++ G K      +
Sbjct: 548 --DAQKEFAEQALARLLEAGIRAELDDRNEKLGFKVREAQVEKIPYMLVAGDKEKELGGL 605

Query: 417 EIKHRLTGIREDMSLEEVI 435
            ++ R        +L+EV+
Sbjct: 606 NVRLRSGDNLGVKTLDEVV 624


>gi|229031449|ref|ZP_04187449.1| Prolyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228729738|gb|EEL80718.1| Prolyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSNYAA 231



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|225447618|ref|XP_002270988.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 670

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 149/446 (33%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G      +    ++  
Sbjct: 259 QLKAYLHFKEEAKRRDHRRLGQDLDLFS-IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIH 317

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  
Sbjct: 318 IEHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRK 377

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 378 LHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 436

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  + G     +   + P     + +    A +        K +             
Sbjct: 437 TEEILLQFGFSKYEVNLSTRPEKAVGADDIWEKATSALRDALDDKGWSYRIDEGGG---- 492

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D+L    + S   ++    F    ++      
Sbjct: 493 ----------------AFYGPKIDLKIEDALGRKWQCSTIQVD----FNLPQRF----DI 528

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+  ++  K   + +    +G++     V+   + G   +W   ++P +  ++ +     
Sbjct: 529 TYVDSNSEKQRPIMIHRAVLGSLERFFGVLIEHYAGDFPLW---LSPIQARVLPVT---D 582

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C ++  +L   G        GE++      ++    PL  +VG K V    V ++
Sbjct: 583 TQLEYCNEVTNKLKANGIRAEV-CHGERLPKLIRNSEKQRIPLMAVVGPKEVETQTVTVR 641

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G    M +E+ I+       N 
Sbjct: 642 SRFGGELGTMIVEDFISRTKSATENR 667


>gi|309378830|emb|CBX22535.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 570

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +  +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEVALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVS 278
              +    +          +D            A      D+ N    D  P  + +   
Sbjct: 344 KVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGRLKL 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 524 LGIPHRIVIGDRALKEGNVEYAERRENEAQAVAIGEIVARVTASLN 569


>gi|75760863|ref|ZP_00740877.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218898971|ref|YP_002447382.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228902322|ref|ZP_04066479.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228966764|ref|ZP_04127808.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|226731427|sp|B7IUH7|SYP_BACC2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|74491647|gb|EAO54849.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218543850|gb|ACK96244.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228792863|gb|EEM40421.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228857291|gb|EEN01794.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEKGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|156838419|ref|XP_001642915.1| hypothetical protein Kpol_411p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113495|gb|EDO15057.1| hypothetical protein Kpol_411p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 729

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 156/439 (35%), Gaps = 42/439 (9%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A    H+ + +     + ++ S G   WLP G +    +  ++R E  + G  E+  P 
Sbjct: 318 EAAKRDHRRLGKEQELFLFNEMSPGSCFWLPHGTRIYSTLVDMMRTEYRKRGYEEVITPN 377

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR LP+   
Sbjct: 378 MYNSKLWETSGHWANYKENMFTFEVEKETY-GLKPMNCPGHCLMFKSRERSYRELPWRVA 436

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E      G+ R R F   DA+ F  T +  +     +F     ++   G + 
Sbjct: 437 DFGVIHRNEYSGALSGLTRVRRFQQDDAHIF-CTQDQIEGEIENIFNFLQFVYGVFGFEF 495

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             M   + P       E    A+                 P +                 
Sbjct: 496 -KMELSTRPEKYVGELETWNNAEAKLQSALEKWGGDWELNPGDG---------------- 538

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHY 311
               A      +  + D+L    + +   ++    F    ++ L   A     +   +  
Sbjct: 539 ----AFYGPKIDIMISDALKRWHQCATIQLD----FQLPNRFELEFKAKDNQENENYERP 590

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++     GK   WP  ++P ++ ++ +       ++  +++  +
Sbjct: 591 VMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVK---YQEYAQEVRDK 644

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIRE 427
           L   G     D  G  +  +     LL +    IVG   +++  V I++R      G   
Sbjct: 645 LHAAGFYADVDLSGNTLQKKVRTGQLLKYNFIFIVGEDELTNKTVNIRNRDIVEQQGKNA 704

Query: 428 DMSLEEVINYASHRFSNNR 446
            ++L+ V+   S      R
Sbjct: 705 AIALDLVVEQLSSLKQEKR 723


>gi|15835484|ref|NP_297243.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270285665|ref|ZP_06195059.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270289673|ref|ZP_06195975.1| threonyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|301337060|ref|ZP_07225262.1| threonyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
 gi|13878797|sp|Q9PJF9|SYT_CHLMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|7190897|gb|AAF39666.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 635

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 147/444 (33%), Gaps = 43/444 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +     +S G+  + P G    + +    +  
Sbjct: 221 KELKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QSYSAGMPFFHPRGMVIWNALIDYWKRL 278

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  ++  P L S +LW  SG +++Y + M  L   +++     P +       +++
Sbjct: 279 HQLAGYQQIQTPQLMSRELWEISGHWENYKENMYTLTV-DEEDYAIKPMNCPGCMLYYKT 337

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR  P    +I    R EL     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 338 QLHSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAHVF-LTPEQVEEETLNILN 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL    +   + P  G   S +   LA                  P E   
Sbjct: 397 LVSELYGTFGLDY-HLELSTRPEQGTIGSDDLWELATEALKNALVKSQKPFIISPGEGAF 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 456 YGPKIDI---------------------------HVKDAINRTWQCGTI-QLDMFLPERF 487

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +    G K   + +     G++     ++     G+  +W   ++P  + +I +   
Sbjct: 488 DLKYTNPQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHVRIITVADR 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +++    ++ G     D   E +  +   A  +     + +G K +    + 
Sbjct: 545 HEA---RAQELAKYFTQQGILATVDQASESVSKKIRNAQNMQVNYMITIGDKELETQLLA 601

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R   +  D+S+E   N     
Sbjct: 602 VRTRDNRVLNDISVEHFTNTILEE 625


>gi|301055309|ref|YP_003793520.1| prolyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300377478|gb|ADK06382.1| prolyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--A 279
             +   +   +   +   ++     ++  +     +  +D+   +  D  P+       A
Sbjct: 344 IIADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGNGTILFA 403

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G++
Sbjct: 404 RGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL G
Sbjct: 464 WPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLFG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 524 LPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|228986962|ref|ZP_04147088.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772740|gb|EEM21180.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DESGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|254828679|ref|ZP_05233366.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|254829924|ref|ZP_05234579.1| prolyl-tRNA synthetase [Listeria monocytogenes 10403S]
 gi|254898516|ref|ZP_05258440.1| prolyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254911993|ref|ZP_05262005.1| prolyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936320|ref|ZP_05268017.1| prolyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|284801704|ref|YP_003413569.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284994846|ref|YP_003416614.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|258601083|gb|EEW14408.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258608910|gb|EEW21518.1| prolyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|284057266|gb|ADB68207.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060313|gb|ADB71252.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|293589957|gb|EFF98291.1| prolyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 568

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 163/285 (57%), Gaps = 1/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S               +
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEMAPVLY 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  S     +           + +   F  +P  K + +   +V
Sbjct: 241 MEKKSHELEKDLEKVATPDQKSITDIVEFLEVPIEKTMKSMLYQV 285



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           KD ++  + +    F  I          T+ +        +   D     K     GIEV
Sbjct: 351 KDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGVIKFAE--GIEV 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G +W   +
Sbjct: 409 GHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGFVWDKQI 468

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +PF + LI +    +      E +Y  L   G  V  DD  E+ G +FA ADL+G P+++
Sbjct: 469 SPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFSVLIDDRAERAGVKFADADLIGLPIRI 528

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 529 TVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|325860506|ref|ZP_08173616.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325481987|gb|EGC85010.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 649

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 160/458 (34%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDLLRRL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +++
Sbjct: 287 LRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + PE  K  +   
Sbjct: 347 AYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPEQVKTEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F   G  +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFKTFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESEAA-- 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
                           A          E    +    K        +G  +  GT    Y
Sbjct: 450 -------------IKQACEEKGLKARVELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPNRFKLEYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   K+ A L         DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYAFKVKAYLDAHDVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++  V ++ +  G +  M++E      +   ++    L
Sbjct: 611 AEGLVSMRQQGGGEQATMTMEAFAERINAEVADQLKTL 648


>gi|317121850|ref|YP_004101853.1| prolyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315591830|gb|ADU51126.1| prolyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 586

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+++P +AEIASH+LMLR G+I + + GIY WLPLG++A+  V AI+REE
Sbjct: 1   MRWSRLLIPTLRDDPAEAEIASHRLMLRAGLIRRVTAGIYEWLPLGRRAVAKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +Q A+LW E+GR+  YG+EM RL DR+ +    GPTHEE++TD+ R+
Sbjct: 61  MNRKGGLEVGLPIVQPAELWRETGRWAEYGEEMWRLKDRHGREYCLGPTHEEIITDLVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ K+RDE+RPRFGVMR+REF+MKDAYSFD+  EG + SY  M  +
Sbjct: 121 TVSSYRQLPLLLYQIQNKYRDEIRPRFGVMRAREFVMKDAYSFDVDAEGLERSYQAMDDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A+ G IGG  +HEF+ LAD GE  +          
Sbjct: 181 YRRIFSRCGLVFRAVAADPGAIGGSGTHEFMALADYGEALIVYCDACGYAA 231



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/179 (44%), Positives = 106/179 (59%), Gaps = 2/179 (1%)

Query: 267 LFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             DS P+      SARGIEVG IF   TKYS  +  TFK ADG++  + MG YGIG  R 
Sbjct: 392 PGDSCPDCGAPMASARGIEVGQIFKLWTKYSEALGCTFKDADGRERPMVMGCYGIGVTRT 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAAVIE  HD KGIIWP SVAPF   ++ +  ++   R A E+IY +L + G +   DD 
Sbjct: 452 VAAVIEQHHDEKGIIWPMSVAPFHAVVVPVNYNEPDQRQAAERIYGQLVEAGVEAVLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E+ G +F  ADL+GFPL+V VG + +++ KVEI  R TG  + + +E      + R  
Sbjct: 512 DERPGVKFNDADLIGFPLRVTVGPRGLAEGKVEIVDRATGQADPVPVEHAAAEVARRVR 570


>gi|256752497|ref|ZP_05493354.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748632|gb|EEU61679.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 570

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/241 (48%), Positives = 159/241 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +   F 
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSIGEAVIAYCDNCGYAANEEKAECFI 240

Query: 241 D 241
           +
Sbjct: 241 N 241



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 109/232 (46%), Gaps = 4/232 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            GE  +    +           +  D    N +           +D+ N    D  P   
Sbjct: 340 KGEVMIIVDNEIPQMRNFIVGANETDYHIKN-VNYGRDFKADVVADIKNVIEGDKCPRCG 398

Query: 276 --RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  H
Sbjct: 399 SPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHH 458

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F 
Sbjct: 459 DEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFN 518

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ADLLG P+++ VG K V D  VEIK R     E++ + +V+    +     
Sbjct: 519 DADLLGIPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVVEKVKNIIKEK 569


>gi|121593268|ref|YP_985164.1| prolyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|222109990|ref|YP_002552254.1| prolyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|152074743|sp|A1W4B3|SYP_ACISJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782898|sp|B9ME00|SYP_DIAST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120605348|gb|ABM41088.1| prolyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|221729434|gb|ACM32254.1| prolyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 581

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SH+LM+R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHQLMMRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFDKMGPELLRIHDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 112/217 (51%), Gaps = 1/217 (0%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           M   I   N +   I  +N   +       A              + +    RGIEVGH+
Sbjct: 364 MADWICGANQEGHHITGVNWGRDLPEPDMVADLRNVVAGDLSPDGQGELAIERGIEVGHV 423

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           FY GTKYS  M+ATF G DGK  + +MG YGIG  R+ AA IE +HD +GIIWPD++APF
Sbjct: 424 FYLGTKYSKAMNATFLGEDGKPAFFEMGCYGIGVTRLPAAAIEQNHDERGIIWPDAIAPF 483

Query: 348 KISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            + +  +     +  +   E +YA L   G DV  DD GE+ G+ FA  +L+G P +V +
Sbjct: 484 TVVICPVGMDRSEAVKAQAESLYADLLAAGVDVILDDRGERPGAMFADWELIGVPHRVTI 543

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G K + + +VE +HR       + + +++ +   R +
Sbjct: 544 GDKSLKEGQVEYQHRRDASATKVGVADILAHVKERLA 580


>gi|313901629|ref|ZP_07835066.1| prolyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313468110|gb|EFR63587.1| prolyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 586

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+++P +AEIASH+LMLR G+I + + GIY WLPLG++A+  V  I+REE
Sbjct: 1   MRWTRLLIPTLRDDPAEAEIASHRLMLRAGLIRRVTAGIYEWLPLGRRAVVKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +Q A+LW E+GR+  YG+EM RL DR+ +    GPTHEE++TD+ R+
Sbjct: 61  MNRKGGLEVGLPIVQPAELWRETGRWAQYGEEMWRLKDRHGREYCLGPTHEEIITDLVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ K+RDE+RPRFGVMR+REF+MKDAYSFD+  EG + SY  M  +
Sbjct: 121 TVSSYRQLPLLLYQIQNKYRDEIRPRFGVMRAREFIMKDAYSFDVDAEGLERSYQAMDDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+ G IGG  +HEF+ LAD GE  +          
Sbjct: 181 YRRIFSRCGLVFRPVAADPGAIGGSGTHEFMALADYGEALIVYCDACGYAA 231



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 2/179 (1%)

Query: 268 FDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            D+ PE      +ARGIEVG IF   TKYS  +  TFK ADG++  + MG YGIG  R V
Sbjct: 393 GDACPECGTPMAAARGIEVGQIFKLWTKYSEALGCTFKDADGQERPMVMGCYGIGITRTV 452

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AAVIE  HD KGIIWP SVAP+ + ++ +   +   R A E++Y +L + G +   DD  
Sbjct: 453 AAVIEQHHDEKGIIWPMSVAPYHVVVVPVNYAEPDQRQAAERVYGQLLEAGVEAVLDDRD 512

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           E+ G +F  ADL+GFPL+V VG + + + KVE+  R TG    + +++     + R   
Sbjct: 513 ERPGVKFNDADLIGFPLRVTVGPRGLVEGKVEVVERATGRATPVPVDQAAAEVARRVRQ 571


>gi|228940907|ref|ZP_04103466.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973836|ref|ZP_04134412.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980425|ref|ZP_04140735.1| Prolyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228779245|gb|EEM27502.1| Prolyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785861|gb|EEM33864.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818743|gb|EEM64809.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941586|gb|AEA17482.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQIYITNILK 566


>gi|229157395|ref|ZP_04285473.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228626122|gb|EEK82871.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DESGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R T   E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATAESEEVKVEELQTYIANILK 566


>gi|312901397|ref|ZP_07760674.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|311291473|gb|EFQ70029.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
          Length = 626

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 152/408 (37%), Gaps = 36/408 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++  
Sbjct: 250 KEFIKMREEAKERDHRKLGKELDLFM-VSQEVGSGLPFWLPKGATIRRTIERYIVDKEIS 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I
Sbjct: 309 LGYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDI 368

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ +  R E      G+ R RE  + D ++F + P+  K  + +     
Sbjct: 369 HSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VRPDQIKDEFKRTLELM 427

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                  D   T  +   D M     +      D
Sbjct: 428 VAVYADFNITDYRFRLSYR--------------DPNNTDKYFDDDAMWEKAQAMLKAAMD 473

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L+    +     A      + ++  +L   + +S   ++    F    ++      T
Sbjct: 474 ELELD--YFEAEGEAAFYGPKLDVQVKTALGMEETLSTIQLD----FLLPERF----DLT 523

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG++    V +    +  M    A +   + G    W   +AP + ++I +    +
Sbjct: 524 YVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAFPTW---LAPIQATIIPVSV--E 578

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
              +   +I  RL   G  V  DD  E++G +   +     P Q++VG
Sbjct: 579 AHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVG 626


>gi|254796675|ref|YP_003081511.1| threonyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589907|gb|ACT69269.1| threonyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 647

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 154/445 (34%), Gaps = 45/445 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L E  R D       + L    + + ++G   W   G      +   IR +     
Sbjct: 234 YLSFLHEAKRRDHRAIGKTMELF--HLQEEAQGQVFWHENGFLLYRVLENYIRSKLKAHD 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S  LW  SG +  + + M  +   +D      P +     ++F+  +KSY
Sbjct: 292 YREVKTPVVYSKCLWERSGHWSKFKENMF-VIRSDDGEFSLKPMNCPAHIEVFKQSLKSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G+MR R F+  DA+ F  TPE               +
Sbjct: 351 RDLPLRLAEFGMCHRNEASGALHGLMRVRGFVQDDAHIF-CTPEQICDETVAFCELLKEV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LG   + +R    P     + E    A+            +    P E   +   I 
Sbjct: 410 YRDLGFTEVEVRFSDRPEVRLGNDETWDKAEIALKSAMDKAGLVYTLNPGEGAFYGPKIE 469

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              +                               R  + G        + LP  + AT+
Sbjct: 470 FVLVD---------------------------ALKRKWQCGT---LQVDFVLPERLDATY 499

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +GK  H V +    +G       ++   +DGK  +W   +AP +++++ I    +  
Sbjct: 500 IDHEGKKQHPVMLHRAILGTFERFLGILIEHYDGKFPLW---LAPTQVAVLTIT---EKV 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   LSK G     D   ++I  +         P+  I+G     ++ V ++  
Sbjct: 554 EEYAKSLLNHLSKTGIRAVSDFSNQRIDYKIRYHTTRRVPILWIIGRIEEKNNSVTVRRM 613

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +   E  +++  ++     F+  +
Sbjct: 614 GSSESEVKTVDTALDDILGEFNVRQ 638


>gi|30021908|ref|NP_833539.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|81433856|sp|Q819Y4|SYP1_BACCR RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|29897464|gb|AAP10740.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|282896497|ref|ZP_06304517.1| Prolyl-tRNA synthetase [Raphidiopsis brookii D9]
 gi|281198603|gb|EFA73484.1| Prolyl-tRNA synthetase [Raphidiopsis brookii D9]
          Length = 604

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 150/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  ++ IIREE
Sbjct: 2   MRLSQKLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKISQIIREE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 62  MNATGAEECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQHLGLGPTHEEVITTI 121

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 122 GRDMIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEESLKKTYQDM 181

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D     
Sbjct: 182 YKAYSNILRRCGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTQDGKYAA 235



 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 1/176 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIE GHIF  GTKYSL M AT+    G++  + MG YG+G  R+  + +
Sbjct: 426 HDPSQTLETARGIEAGHIFQLGTKYSLAMGATYTNEQGEEKPLVMGCYGVGVSRLAQSAV 485

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+DG GIIWP ++AP+   +      D    +  EKIY  L+KVG +   DD  E+ G
Sbjct: 486 EQSYDGDGIIWPVAIAPYHAIISIPNIKDSQQVEIAEKIYTELNKVGIETLLDDRNERAG 545

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +F  ADL+G P +++ G + ++  KVE+  R T   +++++E+++N      S  
Sbjct: 546 VKFKDADLIGIPYRIVTG-RSITHGKVEVVTRATRESKEIAIEDLVNTLESWISQR 600


>gi|240143521|ref|ZP_04742122.1| threonine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257204557|gb|EEV02842.1| threonine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291540396|emb|CBL13507.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Roseburia
           intestinalis XB6B4]
          Length = 591

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 157/436 (36%), Gaps = 36/436 (8%)

Query: 18  AEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           A+   H+ + +   +        +G+  +LP G      +   I+ ++ + G + +  P 
Sbjct: 178 AKDRDHRKIGKEMHLFMSDDLVGRGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPC 237

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +L+  SG +D Y + M    +   ++ +  P +      I+ + + SY++LP    
Sbjct: 238 VGTVNLYKTSGHWDHYKENMFPAMEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIG 297

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-K 191
           +I   FR E      G+ R R F   DA+ F +TPE  +  + K+       +    +  
Sbjct: 298 EIAHDFRFEASGTLKGIERGRHFCQNDAHLF-VTPEQIESEFAKVVELIFDTYKDFNITD 356

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              + +   P      H+   + +  E               +     DDI    +    
Sbjct: 357 YRCVLSLRDPEDKVKYHDDDEMWNNAE--------------NALRKVLDDIGIEYTEEIG 402

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
             A Y    DV+ +    +                 F    K++L    ++  +DG K  
Sbjct: 403 EAAFYGPKLDVNVKPAIGNEYTLST-------CQLDFCLPAKFNL----SYIDSDGTKKT 451

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++    A I     G   +W   +AP +  ++ +K  D+        +Y 
Sbjct: 452 PVVLHRAILGSLDRFMAYILEETKGNLPLW---LAPVQAKILPVKNEDEELNAYSHDLYK 508

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  D+  E++G +   A +   P  +++G    +D  V  +         +S
Sbjct: 509 YLDDNGIRVEIDERNEKLGYRIREAQMEKVPYLLVLGKNEAADGTVSYRLHGEQNSTTVS 568

Query: 431 LEEVINYASHRFSNNR 446
            E+ +          +
Sbjct: 569 REDFLALLKEDIRTKK 584


>gi|42782910|ref|NP_980157.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|217961239|ref|YP_002339807.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229140460|ref|ZP_04269015.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|81409464|sp|Q732Q0|SYP1_BACC1 RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|226731429|sp|B7HLF2|SYP_BACC7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42738837|gb|AAS42765.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|217063356|gb|ACJ77606.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228643021|gb|EEK99297.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|324327716|gb|ADY22976.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|228909643|ref|ZP_04073466.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228849932|gb|EEM94763.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDCLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +     V R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDVQREMGENIYNSLQEKGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|228935133|ref|ZP_04097960.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824498|gb|EEM70303.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNYRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--A 279
             +   +   +   +   ++     ++  +     +  +D+   +  D  P+       A
Sbjct: 344 IIADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGNGTILFA 403

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G++
Sbjct: 404 RGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL G
Sbjct: 464 WPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLFG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 524 LPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|313112983|ref|ZP_07798626.1| threonyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624703|gb|EFQ08015.1| threonyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 594

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 164/451 (36%), Gaps = 41/451 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIR 58
           R++  L   ++  ++A    H+ + +   +        +G+  +LP G      +   I+
Sbjct: 175 RNQEELDAWEKEQQEARERDHRKIGKEMGLFMTDDLVGRGLPMFLPAGYTVWQELENYIK 234

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E++   G + +  P + + +L+  SG +D Y + M    +   ++ +  P +      I+
Sbjct: 235 EKERARGYLHVMTPCIGTVNLYKTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIY 294

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +   SYR+LP    +I   FR E      G+ R R F   DA+ F  TPE  K     +
Sbjct: 295 ANRPHSYRDLPMRIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLF-CTPEQIKSEVANV 353

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++    +                        D  + + +   D M         
Sbjct: 354 CDLIFEVYKDFNITDYRCVLSLR--------------DPADKKKYHDDDAMWNHAE---Q 396

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVH-NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              ++++   I        AA      +  +  ++     +S   ++    F    K+  
Sbjct: 397 ALREVLTELGIHFTEEIGEAAFYGPKLDVNVKPAVGAEYTLSTCQLD----FCLPAKF-- 450

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+   DG +   V +    +G++    A +     GK   W   +AP ++ ++ + 
Sbjct: 451 --HLTYVDKDGTEKTPVVLHRAILGSLDRFMAYLIEETKGKFPTW---LAPTQVKVLPV- 504

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDS 414
              +   D  E +  +L + G  V  DD  ++IG +   A  +   P  +++G+K     
Sbjct: 505 --SEKTLDYAEGVTEKLVEAGVRVVLDDDNQKIGYKIREAQQVDRVPYMLVLGAKEAEAG 562

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + ++ R  G    M L+  I   +    N 
Sbjct: 563 NISVRDRK-GETTTMELDAFIAKVTAEIRNR 592


>gi|150015022|ref|YP_001307276.1| prolyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|189083493|sp|A6LPP0|SYP_CLOB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149901487|gb|ABR32320.1| prolyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 570

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + G+Y+++PLG K L  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMAAGVYNYMPLGLKVLKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW ESGR+D+YG EM RL DR D+    GPTHEEV TDI R+
Sbjct: 61  MNAAGAQEFLASAIIPAELWQESGRWDAYGAEMFRLKDRGDRDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   +Y+KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQGGLDLAYDKMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  V    +     
Sbjct: 181 YVKIFNRCGLDAKCVAADSGAIGGSNSAEFMVKSEVGEDDVVFCSECNYAA 231



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 2/183 (1%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E     +   K   ARG EVGHIF  GTKYS  M+A F   DGK+    MG YGIG  R
Sbjct: 386 TEGEKCPVCGGKVTIARGTEVGHIFKLGTKYSEAMNAKFIDEDGKEKPFIMGCYGIGVTR 445

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +A++IE  HD  GI+WP SVAP+ +S+I +   D+       +IY +L+  G +   DD
Sbjct: 446 TMASIIEQHHDENGIVWPLSVAPYHVSVIPVNVKDEEQARIANEIYEKLTSAGIEALLDD 505

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G +F  ++L+G P+++ VG K ++D ++E K R  G  E + +E+V N     F 
Sbjct: 506 RNERAGVKFKDSELMGIPMRITVGKK-INDGEIEFKLRD-GEMEVIKIEDVYNIIKGEFE 563

Query: 444 NNR 446
            N+
Sbjct: 564 KNK 566


>gi|168027962|ref|XP_001766498.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682407|gb|EDQ68826.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 615

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 152/444 (34%), Gaps = 42/444 (9%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   Q    +A+   H+ +   L    I +    G+  W P G      +    ++    
Sbjct: 205 LKAYQVQKEEAKRRDHRRLGQDLNLFSIQEDAGGGLVFWHPKGAMIRHIIEDYWKKMHFA 264

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   DLW  SG YD Y + M       ++     P +      +++  ++
Sbjct: 265 NGYELLYTPHIAKLDLWKTSGHYDFYKENMFDQMQIEEELYQIRPMNCPFHIQVYKDALR 324

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++   +R E      G+ R R F   D + F L P+  +     +     
Sbjct: 325 SYRELPMRVAELGTVYRYERSGTLHGLFRVRGFTQDDGHIFCL-PDQIRDEIRGVLDLTE 383

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I  + G     +   + P     S E    A T        K +               
Sbjct: 384 MILKQFGFSKFEINLSTRPEKAVGSDEIWEKATTALKSALEDKGWEYGIDEGGG------ 437

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + S   ++    F    ++++     +
Sbjct: 438 --------------AFYGPKIDVKIEDAIGRKWQCSTIQVD----FNLPERFNM----VY 475

Query: 303 KGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             +D  +   + +     G++     ++  ++ G   +W   +AP +  L+ +  ++   
Sbjct: 476 VDSDTSRKQPIMIHRAIFGSIERFFGILTENYAGDFPLW---LAPVQARLLPVTDNE--- 529

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C+K+ A L            GE++G     A+    P+  +VG K V    + ++ R
Sbjct: 530 VDYCKKVVAELKAREIRAEV-IFGERLGKLIRNAETQKIPVMAVVGRKEVETETLTVRTR 588

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G   ++++ ++ +      S  
Sbjct: 589 HGGELGNVTVADLADRIQLAISTR 612


>gi|260220337|emb|CBA27773.1| Prolyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 580

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPTDAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR+D  G E+LR+ DR+++  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVIQPAELWQETGRFDKMGPELLRIKDRHERDYVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQDSAKASYQVMAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVG 285
           M   I   N +   I  +N    +        +D+ N    D+ P+ K      RGIEVG
Sbjct: 363 MADWICGANEEGFHIRGVN--WGRDLPEPDMVADLRNVVEGDASPDGKGVLAIERGIEVG 420

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           H+FY GTKYS  M+ATF   +GK  +++MG YGIG  R+ AA IE +HD KGIIWPD++A
Sbjct: 421 HVFYLGTKYSKAMNATFLDVNGKPQFMEMGCYGIGITRLPAAAIEQNHDDKGIIWPDALA 480

Query: 346 PFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           PF + L  I        + A +K+Y  L   G DV  DD  E+ G+ FA  +L+G P +V
Sbjct: 481 PFTVVLCPINPDRFPDVKAAADKLYEELLSAGVDVILDDRNERPGAMFADWELIGVPHRV 540

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +G + + +  VE +HR       + + E+ +    R  
Sbjct: 541 NIGDRGLKEGVVEYQHRRESAATSVPVAEIASLLLGRLK 579


>gi|282899245|ref|ZP_06307218.1| Prolyl-tRNA synthetase [Cylindrospermopsis raciborskii CS-505]
 gi|281195881|gb|EFA70805.1| Prolyl-tRNA synthetase [Cylindrospermopsis raciborskii CS-505]
          Length = 603

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 116/234 (49%), Positives = 150/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  ++ I+REE
Sbjct: 1   MRLSQKLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKISQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAEECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQHLGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 GRDMIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D     
Sbjct: 181 YQAYSNILRRCGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTQDGKYAA 234



 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 1/176 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIE GHIF  GTKYSL M AT+    G++  + MG YG+G  R+  + +
Sbjct: 425 HDPSQTLETARGIEAGHIFQLGTKYSLAMGATYTNEQGEEKPLVMGCYGVGVSRLAQSAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+DG GIIWP ++AP+   +      D    +  EKIY  L+KVG +   DD  E+ G
Sbjct: 485 EQSYDGDGIIWPVAIAPYHAIISIPNIKDTHQVEIAEKIYTELNKVGIETLLDDRNERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +F  ADL+G P +++ G + +S  KVE+  R T   +++++E +++      S  
Sbjct: 545 VKFKDADLIGIPYRIVTG-RSISHGKVEVVTRATRESQEIAIENLVDTLESWISQR 599


>gi|260775255|ref|ZP_05884152.1| prolyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608436|gb|EEX34601.1| prolyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 571

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 150/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           D      I        +   D+ N    D  P  K      RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELSQVEDLRNVVEGDPSPCGKGTIALKRGIEVGHIFQLGNVYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +  +++ +++ +   + +
Sbjct: 546 YKNRRTGDKTPVAMADIVEHIKAQLA 571


>gi|153835582|ref|ZP_01988249.1| prolyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148867822|gb|EDL67058.1| prolyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 571

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  225 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNVYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   +  
Sbjct: 546 YKNRRSGEKTAVAMADIVEHVKAQLQ 571


>gi|310641908|ref|YP_003946666.1| prolyl-tRNA synthetase 1 [Paenibacillus polymyxa SC2]
 gi|309246858|gb|ADO56425.1| Prolyl-tRNA synthetase 1 [Paenibacillus polymyxa SC2]
          Length = 581

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/232 (50%), Positives = 156/232 (67%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  L  L+E P +AE+ SH+LMLR G I Q + G+Y+++PLG++ L  V  I+R+E
Sbjct: 1   MRQSQLLLTTLREAPAEAEVISHQLMLRAGFIRQLAAGMYTYMPLGRRVLRKVEQIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ  +LW ESGRYD YG E++RL DR+D+    GPTHEEV+T + R+
Sbjct: 61  MDRAGAGELLMPVLQPTELWQESGRYDVYGPELMRLQDRHDREFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++RSREFLMKDAYSFD    G  H+Y  MF +
Sbjct: 121 EVNSYRKLPVTLYQIQTKFRDERRPRFGLLRSREFLMKDAYSFDANWAGLDHTYWTMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R  L    + A++G IGG+  +HEF+ LA+ GE  +          
Sbjct: 181 YQRIFTRCSLNFRAVEADAGAIGGEGETHEFMALAEIGEDTIVACTCCDYAA 232



 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 1/211 (0%)

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
             N        +N   +      A   +V          E K    RGIE+GH+F  GTK
Sbjct: 372 GANEQDYHYRHVNPRRDLDLRHVADLRNVIEGDRCSRCDEGKLELHRGIEIGHVFKLGTK 431

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  + ATF  A G D  + MG YGIG  R+++A++E +HD  G+IWP ++APF++ +I 
Sbjct: 432 YSEKLGATFLDASGTDQVMIMGCYGIGVSRILSAIVEQNHDQNGMIWPHALAPFQVHIIP 491

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I   D++     E +Y++L   G +V  DD  E+ G +F  +DL+G P +++VG K    
Sbjct: 492 ISVKDRLQMQIAEDLYSQLQDRGVEVLLDDREERPGVKFKDSDLVGIPARIVVG-KDAEH 550

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            KVE   R +  +E + + +V     +   +
Sbjct: 551 GKVEFVERRSSHKESIHIHDVERRILNLIQH 581


>gi|196036918|ref|ZP_03104302.1| prolyl-tRNA synthetase [Bacillus cereus W]
 gi|195990473|gb|EDX54457.1| prolyl-tRNA synthetase [Bacillus cereus W]
          Length = 566

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--A 279
             +   +   +   +   ++     ++  +     +  +D+   +  D  P+       A
Sbjct: 344 IIADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGNGTILFA 403

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G++
Sbjct: 404 RGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL G
Sbjct: 464 WPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLFG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 524 LPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|186685902|ref|YP_001869098.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|186468354|gb|ACC84155.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 611

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 168/446 (37%), Gaps = 49/446 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            +   RD      +L L    I       G+  W P G      +   +++EQ + G + 
Sbjct: 199 EEALRRDHRKLGKELGL---FIFSDLVGPGLPLWTPKGTLLRSTLEDFLKQEQVKRGYLS 255

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHI 122
           +  P +   DL+  SG +  Y ++M  L   +++A       +  P +      I++S +
Sbjct: 256 VVTPHIARVDLFKTSGHWQKYKEDMFPLMADDEEAAAQEQGFVMKPMNCPFHIQIYKSEL 315

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +    +R E     G + R R F + D++ F +TPE     +  +    
Sbjct: 316 RSYRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDSEFLSVVDLI 374

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +F++L LK+   R                  D    +   S +  D    +     + 
Sbjct: 375 LSVFNKLQLKNFKARLSFR--------------DPASDKYIGSDEVWDKAEGAIRRAVET 420

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
           +   +       A Y    D       D          R  ++G +      Y+LP    
Sbjct: 421 LGMEHFEGIGEAAFYGPKLDFIFSDALD----------REWQLGTV---QVDYNLPERFE 467

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   DG +   V +     G++  +  ++   + G   +W   +AP +  L+ +    
Sbjct: 468 LEYVAEDGVRKRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPVQARLLPVG--- 521

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + + A++  +G     D  G+++G Q   A+    P+  +VG+K V  + + I
Sbjct: 522 DTQLDFAKDVVAKMRALGIRAEVDTSGDRLGKQIRNAEKEKIPVMAVVGAKEVETNTLSI 581

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + R +G    + ++EV++      + 
Sbjct: 582 RTRASGELGVIPVDEVVDKMKDAIAK 607


>gi|62185526|ref|YP_220311.1| threonyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|73919780|sp|Q5L4T1|SYT_CHLAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62148593|emb|CAH64365.1| threonyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 635

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 153/447 (34%), Gaps = 43/447 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD  +   KL L +    + S G+  + P G    D +    +  
Sbjct: 221 KELKEHLHQLKEAKKRDHRVLGMKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRL 278

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L S  LW  SG + +Y + M  L    D+     P +       +++
Sbjct: 279 HQLAGYKEIQTPQLMSRSLWEVSGHWSNYRENMYTLK-IEDEDYAIKPMNCPGCMLYYKT 337

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SY+  P    +I    R E+     G+MR R F   DA+ F LTPE  +     +  
Sbjct: 338 RLHSYKQFPLRIAEIGHVHRYEVSGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILH 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               ++   GL+   +   + P      S E   LA     +   +        P +   
Sbjct: 397 LVSELYSTFGLEY-HLELSTRPEKATIGSDELWELATAALERALVNSHTPFIINPGDGAF 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I +                             K    R  + G I           
Sbjct: 456 YGPKIDI---------------------------HVKDAIQRTWQCGTI-QLDMFLPERF 487

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A G K   V +     G++     ++     G+  +W   ++P  I +I +   
Sbjct: 488 ELEYTNAQGEKSTPVMLHRALFGSIERFLGILIEHFKGRFPLW---LSPEHIRVITVADR 544

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      +K+     K+G  V  DD  E +  +   A  +     V +G + +  + + 
Sbjct: 545 HQ---PRAQKLATAWQKLGFVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEQNTLA 601

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           I+ R   +  DM+ ++ +N      ++
Sbjct: 602 IRTRDNRVLNDMTEDKFLNTLLEEKNS 628


>gi|114600738|ref|XP_517835.2| PREDICTED: threonyl-tRNA synthetase isoform 10 [Pan troglodytes]
 gi|114600740|ref|XP_001153787.1| PREDICTED: threonyl-tRNA synthetase isoform 6 [Pan troglodytes]
 gi|114600742|ref|XP_001153971.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 9 [Pan
           troglodytes]
          Length = 723

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 631 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 691 RDNKVHGERTISETIERLQQL 711


>gi|229025259|ref|ZP_04181679.1| Prolyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228736012|gb|EEL86587.1| Prolyl-tRNA synthetase [Bacillus cereus AH1272]
          Length = 566

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDTSNYAA 231



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|83816191|ref|YP_446893.1| threonyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757585|gb|ABC45698.1| threonyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 694

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 152/442 (34%), Gaps = 43/442 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L T    Q   G+  WLP G      +  ++++EQ + G   +  
Sbjct: 282 KAKERDHRKLGTELNLFTFDTEQVGPGLPMWLPKGTTLRQTLQEVLQQEQVKQGYKPVCT 341

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           P +   DL+  SG Y  Y  +              +   +  P +      I+++   SY
Sbjct: 342 PHIGRLDLYRTSGHYPHYEDDQFPPMVTGEGDDGEEDGYLLKPMNCPHHVKIYQNDHHSY 401

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +    +R E      G+ R R F   DA+ F  TP   K  +  +    L++
Sbjct: 402 RDLPVRLAEFGTVYRQEQTGELGGLTRVRGFTQDDAHIF-CTPAQVKDEFKSVIDLTLKV 460

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG +    +                  D  +T+ +  +D +         D  + ++
Sbjct: 461 LDALGFEEFEAQISLR--------------DPDDTEKYTGRDALWTRAE---QDIREAVA 503

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              +        AA      +         +    R  ++G I      Y+LP     T+
Sbjct: 504 ETDLDAYEEPGEAAFYGPKLDF------MVEDALGRAWQLGTI---QVDYNLPERFELTY 554

Query: 303 KGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D +   V +     G++     V+     G    W   +AP ++ +I +       
Sbjct: 555 VDEHDERKRPVMIHRAPFGSLERFIGVLIEHCGGNFPTW---LAPTQVQIIPVGDD---F 608

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++ A L      V  D   E +G +   A+    P  ++VG        V ++  
Sbjct: 609 VDYAQEVAATLRAEDVRVEIDTSDETVGYKIREAETQKVPYMLVVGGDEEEAGTVSVRSH 668

Query: 422 LTGIREDMSLEEVINYASHRFS 443
             G +  +S+++ ++     F 
Sbjct: 669 ADGPQGTVSVQDFLDRTGPEFE 690


>gi|319944615|ref|ZP_08018883.1| proline--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319742152|gb|EFV94571.1| proline--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 589

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +   LP  +E P DAE+ SHKLM R GMI + + GIY+++PLG + +  + AIIREE
Sbjct: 1   MKATALHLPTFKEAPADAEVVSHKLMTRAGMIRKLAGGIYTYMPLGLRVIRRIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MDAAGAIELLMPVIQPAELWMESGRWEEYGPELLRIRDRHQRDFVIQPTSEEVVTDLARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FY IQ KFRDE RPRFGVMR REF MKDAYSFD   E +  SY KMF +
Sbjct: 121 DLRSYRQLPKNFYHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDSESALVSYRKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  S
Sbjct: 181 YHRIFDRLGLQYRAVAADTGSIGGSASHEFQVIADTGEDALVYS 224



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               +D+ N +  D  P+ +      RGIEVGH+FY GTKYS  M+ATF   +G+   ++
Sbjct: 397 EVMIADIRNVQAGDPSPDGQGTLAIQRGIEVGHVFYLGTKYSQAMNATFIDENGQSKPLE 456

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARL 372
           MG YGIG  R++ A IE +HD KGIIWP S+APF++ +  +     +  R+A +++ A L
Sbjct: 457 MGCYGIGVTRLLGAAIEQNHDDKGIIWPASIAPFEVVVCPMGLERSEAVREAVDRLAADL 516

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     DD  E+ G  FA  +L+G PL++ VG + + +  +E+  R   +   ++  
Sbjct: 517 QAAGIRYVVDDRNERPGVMFADWELIGVPLRITVGDRGLKEGLLELTVRRGMVTHKVAPA 576

Query: 433 EVINYASHRF 442
           +V+       
Sbjct: 577 DVLAEVQKLL 586


>gi|38202255|ref|NP_689508.3| threonyl-tRNA synthetase, cytoplasmic [Homo sapiens]
 gi|60267755|sp|P26639|SYTC_HUMAN RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33875537|gb|AAH00517.2| Threonyl-tRNA synthetase [Homo sapiens]
 gi|119631209|gb|EAX10804.1| threonyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
 gi|158258124|dbj|BAF85035.1| unnamed protein product [Homo sapiens]
 gi|168277378|dbj|BAG10667.1| threonyl-tRNA synthetase [synthetic construct]
 gi|190690713|gb|ACE87131.1| threonyl-tRNA synthetase protein [synthetic construct]
          Length = 723

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 631 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 691 RDNKVHGERTISETIERLQQL 711


>gi|30263823|ref|NP_846200.1| prolyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47529247|ref|YP_020596.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186669|ref|YP_029921.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|65321146|ref|ZP_00394105.1| COG0442: Prolyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|118479041|ref|YP_896192.1| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|165872601|ref|ZP_02217232.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167635829|ref|ZP_02394138.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639857|ref|ZP_02398126.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170687854|ref|ZP_02879068.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170706810|ref|ZP_02897268.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177652150|ref|ZP_02934696.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190568409|ref|ZP_03021316.1| prolyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196042144|ref|ZP_03109427.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196044700|ref|ZP_03111935.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218904947|ref|YP_002452781.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225865800|ref|YP_002751178.1| prolyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227813273|ref|YP_002813282.1| prolyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228916456|ref|ZP_04080022.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928867|ref|ZP_04091899.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947538|ref|ZP_04109828.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229092859|ref|ZP_04223993.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229123332|ref|ZP_04252536.1| Prolyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229186058|ref|ZP_04313228.1| Prolyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229602364|ref|YP_002868057.1| proline--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254683474|ref|ZP_05147334.1| prolyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254721995|ref|ZP_05183784.1| prolyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254735857|ref|ZP_05193563.1| prolyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739617|ref|ZP_05197311.1| prolyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254756010|ref|ZP_05208041.1| prolyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254759329|ref|ZP_05211354.1| prolyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|81583682|sp|Q81WL6|SYP1_BACAN RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|152074739|sp|A0RHJ2|SYP1_BACAH RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|226731426|sp|B7JJ97|SYP_BACC0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782882|sp|C3P5M1|SYP_BACAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782883|sp|C3L7A8|SYP_BACAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782884|sp|C1EP43|SYP_BACC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30258467|gb|AAP27686.1| proline--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47504395|gb|AAT33071.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180596|gb|AAT55972.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|118418266|gb|ABK86685.1| proline--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|164711633|gb|EDR17179.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512258|gb|EDR87635.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167528786|gb|EDR91544.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128228|gb|EDS97097.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170668170|gb|EDT18919.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172082519|gb|EDT67584.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190560413|gb|EDV14391.1| prolyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196024735|gb|EDX63407.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196026996|gb|EDX65620.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218535709|gb|ACK88107.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225789269|gb|ACO29486.1| proline--tRNA ligase [Bacillus cereus 03BB102]
 gi|227007610|gb|ACP17353.1| proline--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228597477|gb|EEK55127.1| Prolyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228660108|gb|EEL15744.1| Prolyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228690481|gb|EEL44264.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228812058|gb|EEM58389.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830674|gb|EEM76279.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843035|gb|EEM88117.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266772|gb|ACQ48409.1| proline--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 566

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--A 279
             +   +   +   +   ++     ++  +     +  +D+   +  D  P+       A
Sbjct: 344 IIADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGNGTILFA 403

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G++
Sbjct: 404 RGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL G
Sbjct: 464 WPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLFG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 524 LPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|325685802|gb|EGD27875.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 643

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 162/442 (36%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEI--ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  R AEI    H+ + R   +     +   G+  W+P G      +   I +++   G 
Sbjct: 228 DLKRRAEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRIIERYIVDKEVAAGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
             +  P L + D +  SG +  Y ++M       +  M+   P +      I++ HI+SY
Sbjct: 288 QHVYTPVLMNLDAYKTSGHWAHYREDMFPPMGMGEGEMLELRPMNCPSHIQIYKHHIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F    +  +  + +     + +
Sbjct: 348 RELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVA-LDQVQEEFARTLQIIMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +H   +     R                  D   T  + + D M     S      D + 
Sbjct: 407 YHDFDINDYYFRLSYR--------------DPKNTDKYFANDEMWERSQSMLKAAMDDMG 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+ +        A      + +   +L  ++ +S   ++    F    ++      ++ G
Sbjct: 453 LDYVEA--EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERF----ELSYIG 502

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG++H   M   G +G M    A +   + G    W   +AP +  +I +        D
Sbjct: 503 ADGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAPVQAEIIPVNL--DAHSD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L   G     D   E++G +   +     P  +++G   ++   V ++   T
Sbjct: 558 YAKKVRDELVAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGT 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +   SL E ++  S   ++ 
Sbjct: 618 EEQNSESLAEFMDKLSKDVASY 639


>gi|332251678|ref|XP_003274973.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 3
           [Nomascus leucogenys]
          Length = 619

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 150/445 (33%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 202 KMLKEWEKLQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 261

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y   M        +     P +      +F    
Sbjct: 262 KRGFQEVVTPNIFNSRLWMTSGHWQHYSDNMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 320

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 321 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 379

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 380 RTVYSIFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 433

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 434 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 472

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 473 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 526

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 527 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 586

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 587 RDNKVHGERTISETIERLQQLKQSR 611


>gi|296203929|ref|XP_002749128.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Callithrix jacchus]
          Length = 726

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 155/441 (35%), Gaps = 44/441 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 315 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLVDFIREEYHKRDFTE 374

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 375 VLSPNMFNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 433

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 434 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 492

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 493 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMEFGEPWKMNPGDG----------- 540

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 541 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 583

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 584 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 637

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   ++ V ++ R   
Sbjct: 638 LQVSSEFFEEGFMADIDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDNR 697

Query: 425 IREDMSLEEVINYASHRFSNN 445
           I  ++ +   I+   +   + 
Sbjct: 698 IHGEILVTSAIDKLKNLKKSR 718


>gi|222097264|ref|YP_002531321.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
 gi|254782885|sp|B9IVA8|SYP_BACCQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221241322|gb|ACM14032.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
          Length = 566

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|114600748|ref|XP_001153418.1| PREDICTED: threonyl-tRNA synthetase isoform 2 [Pan troglodytes]
 gi|114600750|ref|XP_001153486.1| PREDICTED: threonyl-tRNA synthetase isoform 3 [Pan troglodytes]
 gi|114600752|ref|XP_001153550.1| PREDICTED: threonyl-tRNA synthetase isoform 4 [Pan troglodytes]
          Length = 664

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 247 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 306

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 307 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 365

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 366 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 424

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 425 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 478

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 479 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 517

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 518 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 571

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 572 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 631

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 632 RDNKVHGERTISETIERLQQL 652


>gi|62897167|dbj|BAD96524.1| threonyl-tRNA synthetase variant [Homo sapiens]
          Length = 723

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 631 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 690

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 691 RDNKVHGERTISETIERLQQL 711


>gi|269960577|ref|ZP_06174949.1| prolyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269834654|gb|EEZ88741.1| prolyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 571

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNVYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   +  
Sbjct: 546 YKNRRSGEKTAVAMADIVEHVKAQLQ 571


>gi|309364909|emb|CAP23504.2| CBR-TARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 729

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 168/442 (38%), Gaps = 42/442 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +  + +E   RD      +  L     HQ S G   W P G    + +   IR++
Sbjct: 309 KQLKEWQKLQEEAAKRDHRKLGKEQDLF--FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQ 366

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P + +  LW  SG +  Y ++M ++    ++     P +      +F  
Sbjct: 367 YRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEKEE-FGLKPMNCPGHCLMFGH 425

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              +Y  LPF F    +  R+E+     G+ R R F   DA+ F    +       +   
Sbjct: 426 MPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIF-CRQDQISEEIKQCLD 484

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                + ++   +  +   + P G     E    A+   T+   +        P +    
Sbjct: 485 FLEYAYEKVFGFTFKLNLSTRPEGFLGKIETWDQAEADLTEALNATGRKWALNPGDG--- 541

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  + D+L  N + +   ++    F    ++     
Sbjct: 542 -----------------AFYGPKIDITIQDALKRNFQCATIQLD----FQLPNQF----D 576

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++    G K   V +    +G++  + A++  S+ GK   WP  ++P +  +I +    
Sbjct: 577 LSYFDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV---H 630

Query: 359 QVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  RD  + +  ++   G +V +D+  G+ +  Q   + L  F   +++G+K   +  V 
Sbjct: 631 ESVRDYAKDVKKQIFDAGFEVEYDEFCGDTMNKQVRNSQLAQFNFILVLGAKEKENGTVN 690

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R   +R ++ +E++++   
Sbjct: 691 VRTRDNAVRGEVPIEKLLSKFR 712


>gi|229197929|ref|ZP_04324645.1| Prolyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228585647|gb|EEK43749.1| Prolyl-tRNA synthetase [Bacillus cereus m1293]
          Length = 566

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|49481697|ref|YP_037880.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|81395110|sp|Q6HEZ6|SYP1_BACHK RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|49333253|gb|AAT63899.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 566

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--A 279
             +   +   +   +   ++     ++  +     +  +D+   +  D  P+       A
Sbjct: 344 IIADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGNGTILFA 403

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G++
Sbjct: 404 RGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL G
Sbjct: 464 WPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLFG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 524 LPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|52141669|ref|YP_085160.1| prolyl-tRNA synthetase [Bacillus cereus E33L]
 gi|81686584|sp|Q636K7|SYP1_BACCZ RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|51975138|gb|AAU16688.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 566

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--A 279
             +   +   +   +   ++     ++  +     +  +D+   +  D  P+       A
Sbjct: 344 IIADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGNGTILFA 403

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +D  G++
Sbjct: 404 RGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFNDENGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA ADL G
Sbjct: 464 WPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFADADLFG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 524 LPVRVTVGKK-ADEGIVEVKVRATGESEEIKVEELQTYIANILK 566


>gi|300864298|ref|ZP_07109176.1| Prolyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300337687|emb|CBN54322.1| Prolyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 601

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/234 (48%), Positives = 148/234 (63%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E P +AEI SHKL+LR G I +   G+Y +LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFATLREEPAEAEIPSHKLLLRAGYIRRIGSGVYVYLPLLWRVLKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MDATGAQECLLPQLQPAELWRESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHKDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  +  R GL+   + A+SG IGG  S EF+VLA+ GE +V  ++D     
Sbjct: 181 AQAYSNMLRRCGLEFRGVDADSGAIGGSGSQEFMVLAEAGEDEVLYTEDGQYAA 234



 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  + +
Sbjct: 425 HNPAQTLQTARGIEVGHIFQLGTKYSQAMGATYTNEQGEEIPLVMGCYGLGVSRLAQSAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+++ +      D    +  EK+Y  L++ G +   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYQVIISIPNISDAQQIEVAEKLYTELNQAGVETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F  ADL+G P +++ G + +   KVE+  R      ++++++V +      S
Sbjct: 545 VKFKDADLIGIPYRIVTG-RSLKQGKVEVVERAAHKSHEIAIDDVKSTLMQWIS 597


>gi|217077729|ref|YP_002335447.1| threonyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037584|gb|ACJ76106.1| threonyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 636

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 150/428 (35%), Gaps = 47/428 (10%)

Query: 7   FLPILQENPRDAEIASHKLML-RTGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L +L+E    A+   H+ +  + G+       + G+  +LP G   L+ + +  R+   
Sbjct: 232 YLKMLEE----AKKRDHRKLGPKLGLFFINTDVAAGMPIFLPKGATILNELMSFSRQLHK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + +  LW +SG +D Y   M    ++ +      P +      I+++ +
Sbjct: 288 EYGYKEVMTPLIMNVKLWHQSGHWDHYKDNMY-FTEKEETEYAVKPMNCPGHILIYKNDV 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP   ++     R E      G++R R F   DA+ F    +  +   + +    
Sbjct: 347 VSYRDLPIRLFEFGKVHRYERSGVLHGLLRVRAFTQDDAHIF-CRQDQIEEEVSSVVRLI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G         + P       E    A     +V             E      
Sbjct: 406 DELYKPFGFTYRAT-LSTMPEDHMGDEETWEKATNALKKVLEDIKLDFDIAEGEG----- 459

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  + DSL    + +   ++    F    ++       
Sbjct: 460 ---------------AFYGPKVDFHVKDSLGREWQCATIQLD----FQMPERF----DLK 496

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V + +   G++     ++   + G   +W   ++P ++ ++ +      
Sbjct: 497 YVDKDGIEKRPVMIHTAKYGSLERFFGILIEHYAGAFPLW---ISPVQVLVLPV---SDK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   LS+    V  D   E +G +   A +   P  +IVG       K+ ++ 
Sbjct: 551 YIDYAKKVARLLSESNIRVEVDSRNETLGYKIREAQISKVPYMIIVGENEEKSGKISVRS 610

Query: 421 RLTGIRED 428
           R     +D
Sbjct: 611 RDGVEEKD 618


>gi|148675292|gb|EDL07239.1| threonyl-tRNA synthetase-like 2, isoform CRA_b [Mus musculus]
          Length = 559

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 158/442 (35%), Gaps = 46/442 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 148 EKFQEEAKSRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNALMDFIREEYHKRNFTE 207

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +
Sbjct: 208 VLSPNMYNSKLWETSGHWQHYSNNMFTF-DVEKDTFALKPMNCPGHCLMFAHRPRSWREM 266

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F +  E  +            ++  
Sbjct: 267 PVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCM-VEQIEEEIKGCLHFLQSVYST 325

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 326 FGFSF-QLNLSTRPEHFLGEIEIWDEAERQLQNSLVEFGKPWKINPGDG----------- 373

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 374 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 416

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K+  V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C +  
Sbjct: 417 DDKNRPVIIHRAILGSVERMIAILSENYGGK---WPLWLSPRQVMVIPVGP---ACENYA 470

Query: 366 EKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            ++     + G   DV  DD    +  +   A L  +   ++VG K   ++ V ++ R  
Sbjct: 471 LQVSKECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDN 529

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            I  ++S+  VI    +   + 
Sbjct: 530 KIHGEISIASVIEKLKNLKKSR 551


>gi|224002114|ref|XP_002290729.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974151|gb|EED92481.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 791

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 161/448 (35%), Gaps = 38/448 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L + QEN   A+   H+ + +     M H+ S G   WLP G +  + +   I+E  
Sbjct: 376 KKMLKVWQENQEKAKERDHRRIAQQQDLVMFHELSAGSAFWLPHGARIYNKLIEFIKEHY 435

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G  E+  P + + DLW +SG    Y   M    D   K     P +      +F   
Sbjct: 436 WRRGYDEIITPNIYNLDLWHQSGHAMHYKDAMFCF-DVEGKEWAMKPMNCPGHCLMFAGK 494

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           I+SYR+LP  F    +  R+EL     G+ R R F   DA+ +    +  +         
Sbjct: 495 IRSYRDLPIRFADFGVLHRNELSGALSGLTRVRRFQQDDAHIY-CREDQIEDEVLGALDF 553

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G+    +   + P       E    A+    +                    
Sbjct: 554 MKSVYDTFGMTY-KLELSTRPAKALGDKELWDRAEAALARA------------------M 594

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +      +     A      + K+ D++    + +   ++      FG +Y+     
Sbjct: 595 DTFAGKGGWRENPGDGAFYGPKIDIKVMDAMERVHQCATVQLDFQLPIRFGLEYN----- 649

Query: 301 TFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T     G +    V +    +G++  + AV+   + GK   WP  ++P ++ ++ I    
Sbjct: 650 TGSKEKGSEFARPVMVHRAMLGSVERMFAVLCEHYGGK---WPLWLSPRQVMVVPIHKD- 705

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + +  +L   G     D        +   A +  +  Q++VG   V +  V I
Sbjct: 706 --WNDYSQGVRDKLHAEGFYADVDLSKATFQKKVRNAQVEQYNFQLVVGEAEVKNDTVNI 763

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R   +  +  ++E+I Y     +  +
Sbjct: 764 RTRDNKVEGEKKVDELIEYLKQLRAEYK 791


>gi|123981026|gb|ABM82342.1| threonyl-tRNA synthetase [synthetic construct]
 gi|123995829|gb|ABM85516.1| threonyl-tRNA synthetase [synthetic construct]
          Length = 711

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 294 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 353

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 354 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 412

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 413 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 471

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 472 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 525

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 526 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 564

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 565 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 618

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 619 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 678

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 679 RDNKVHGERTISETIERLQQL 699


>gi|229013002|ref|ZP_04170167.1| Prolyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228748256|gb|EEL98116.1| Prolyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 566

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP SVAPF + +I +       R+    IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKSVAPFHVHVIPVNMKSDAQREMGGNIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|167756637|ref|ZP_02428764.1| hypothetical protein CLORAM_02174 [Clostridium ramosum DSM 1402]
 gi|237733925|ref|ZP_04564406.1| threonyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|167702812|gb|EDS17391.1| hypothetical protein CLORAM_02174 [Clostridium ramosum DSM 1402]
 gi|229383006|gb|EEO33097.1| threonyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 577

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 158/442 (35%), Gaps = 40/442 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E  R D +    +L L   M+ +++ G+  +LP G    + +     EE  + G 
Sbjct: 173 LELLEEAKRRDHKKLGKELGLF--MMSEYAPGMPFFLPKGMILRNTLEQFWYEEHAKEGY 230

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S +LW  SG +++Y ++M      +D+     P +      ++++ + SY+
Sbjct: 231 EFIKTPIMMSRELWETSGHWENYKEDMYTSMV-DDREFAIKPMNCPGSLLVYKNSLHSYK 289

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E      G+ R R F   DA+ + +TP+  +    ++     R++
Sbjct: 290 DLPLRMGELGQVHRHEASGALNGLFRVRTFTQDDAHIY-MTPDQIEGEIIRLINFIDRVY 348

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             L L    +   + P                E +        +    +           
Sbjct: 349 GSLNLSY-EIELSTRP----------------EKKYIGDLAIWEKSEAALAAACKAAGKD 391

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D H +              R  + G I             T+   
Sbjct: 392 YKVNPGDGAFYGPKLDFHVKDSLG----------RVWQCGTI-QLDMNLPERFDITYIDD 440

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            G+    V +     G++     ++     G   +W   +AP ++ ++ +   ++   D 
Sbjct: 441 KGEKVRPVMLHRVIFGSIERFIGILIEHFAGVFPLW---LAPVQVKVLPVN--NEYHLDY 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++   L   G  V  D   E++G +     +   P  +++G+    +  V  +     
Sbjct: 496 AKEVTELLKDKGFKVELDAREEKLGYRIREGQMEKVPYLLVLGNNERDEKTVTYRKHGEQ 555

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +  +  ++ +   + +  + +
Sbjct: 556 KQITVPFDDFVAMLNQQIVDKK 577


>gi|229174485|ref|ZP_04302017.1| Prolyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228609045|gb|EEK66335.1| Prolyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 566

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDTSNYAA 231



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +        +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVRQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|297584075|ref|YP_003699855.1| prolyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297142532|gb|ADH99289.1| prolyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 567

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 158/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+  Y  P L++ P DA++ SH+LMLR G+I Q + G+YS+LPLG K L  V AI+REE
Sbjct: 1   MRQRTYLSPTLRDIPSDADVVSHQLMLRAGLIRQSTSGVYSFLPLGYKVLQKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA EM +P++Q A+LW ESGR+D YG E++R  DR+ +    GPTHEEV+T I R 
Sbjct: 61  MDRAGAQEMFMPSIQPAELWQESGRWDDYGAELMRFKDRHQREFALGPTHEEVITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP T YQIQ KFRDE RPRFGV+R REFLMKDAYSFD+  EG   SY++M+ +
Sbjct: 121 DIRSYKELPMTLYQIQTKFRDERRPRFGVLRGREFLMKDAYSFDVDFEGLDQSYDQMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y ++F R  L    + A+SG +GG  +HEF+VL+  GE  +  S 
Sbjct: 181 YKKVFTRCDLNFRAVVADSGAMGGKDTHEFMVLSSIGEDTIAYSD 225



 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 3/202 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSAT 301
              ++       +   SD+   +  D  P+ K       GIEVGH+F  GTKYS  + AT
Sbjct: 366 HYTNVNPNRDFTFDKVSDIRMIQEGDPSPDGKGTIRFKEGIEVGHVFKLGTKYSEALGAT 425

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                GK   + MGSYGIG  R VAA+IE  HD  GIIWP SVAPF+  LI +       
Sbjct: 426 VLDDQGKARPIVMGSYGIGVSRTVAAIIEEHHDEDGIIWPLSVAPFQAHLIPVNIKQDEQ 485

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   E +Y  L + G D+ +DD  E+ G +F  +DLLG P++V +G K   +  VE+K+R
Sbjct: 486 KALAESLYTELQESGLDILFDDRQERPGVKFKDSDLLGLPIRVTIGKK-AGEGIVEVKYR 544

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +G   ++  +++ N      +
Sbjct: 545 KSGETVEVHRDDLKNTILEYVN 566


>gi|332983243|ref|YP_004464684.1| prolyl-tRNA synthetase [Mahella australiensis 50-1 BON]
 gi|332700921|gb|AEE97862.1| prolyl-tRNA synthetase [Mahella australiensis 50-1 BON]
          Length = 569

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F   L+E P +AEI SH+LMLR G++ + + GIY++LPLG++ L  V  I+REE
Sbjct: 1   MKMSEMFFTTLRETPSEAEIPSHQLMLRAGLMRKLASGIYNYLPLGKRVLKKVEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+    L  A+LW E+GR+D +G EM +L DRN++    GPTHEE+ TDI R+
Sbjct: 61  MDKTGAQEILASALLPAELWKETGRWDVFGPEMFKLKDRNEREFCLGPTHEEIFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LPF  YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SY KM+ +
Sbjct: 121 EIKSYKQLPFNLYQIQTKYRDEKRPRFGVMRSREFIMKDAYSFDKDWDGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R  LK   + A++G +GG  S+EF+V +D GE +V    +     
Sbjct: 181 YCAIFDRCDLKYWVVDADTGAMGGKDSNEFMVSSDVGEAEVAYCDECGYAA 231



 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 3/205 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSA 300
               ++           +D+ N ++ D  P+  +     RGIEVGHIF  GTKY+  + A
Sbjct: 364 YHYENVNYGRDFKADVVADIRNIEVGDPCPKCGKPINIARGIEVGHIFKLGTKYTEALGA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+   +G++  + MG YGIG  R VAA+IE  HD +GIIWP SV P+ + ++    +   
Sbjct: 424 TYLDENGQEQPIIMGCYGIGINRTVAAIIEQHHDDRGIIWPMSVTPYHVIIVVASNYQPE 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              A EKI+  L   G +V  DD  E+ G +F  ADL+G P+++ VG K +S   VE K 
Sbjct: 484 QIQAAEKIHYELVSRGIEVLLDDRDERAGVKFNDADLIGIPIRITVGKK-ISAGMVEFKR 542

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R      D+ + ++++       + 
Sbjct: 543 RDKADSIDIPVSDIVDKVIAEIKHE 567


>gi|309803316|ref|ZP_07697413.1| threonine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|308164824|gb|EFO67074.1| threonine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
          Length = 643

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 163/436 (37%), Gaps = 37/436 (8%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D +   H+ + R   +     +   G+  W+P G      +   I +++   G   +  P
Sbjct: 234 DIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + D +  SG +  Y ++M    D  D  M+   P +      I+  HI+SYR LP  
Sbjct: 294 VLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIR 353

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++    +
Sbjct: 354 IAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDI 412

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T  + + D M            D + L  +  
Sbjct: 413 TDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEA 458

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + +   +L  ++ +S   ++    F    +++L    ++ G DG++H
Sbjct: 459 --EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----SYVGKDGEEH 508

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M     +G M    A +   + G    W   +AP ++ +I +   +    +  + + 
Sbjct: 509 RPVMVHRGIVGTMERFIAYLTEIYKGAFPTW---LAPLQVKIIPVN--NDAHGEYAQNVK 563

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  
Sbjct: 564 DQLMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESK 623

Query: 430 SLEEVINYASHRFSNN 445
           +L E ++  S   ++ 
Sbjct: 624 ALSEFVSELSADVASY 639


>gi|259500519|ref|ZP_05743421.1| threonine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|302191209|ref|ZP_07267463.1| threonyl-tRNA synthetase [Lactobacillus iners AB-1]
 gi|309807138|ref|ZP_07701115.1| threonine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|309810241|ref|ZP_07704086.1| threonine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|259167903|gb|EEW52398.1| threonine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|308166489|gb|EFO68691.1| threonine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308169513|gb|EFO71561.1| threonine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
          Length = 643

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 163/436 (37%), Gaps = 37/436 (8%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D +   H+ + R   +     +   G+  W+P G      +   I +++   G   +  P
Sbjct: 234 DIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + D +  SG +  Y ++M    D  D  M+   P +      I+  HI+SYR LP  
Sbjct: 294 VLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIR 353

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++    +
Sbjct: 354 IAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDI 412

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T  + + D M            D + L  +  
Sbjct: 413 TDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEA 458

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + +   +L  ++ +S   ++    F    +++L    ++ G DG++H
Sbjct: 459 --EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----SYVGKDGEEH 508

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M     +G M    A +   + G    W   +AP ++ +I +   +    +  + + 
Sbjct: 509 RPVMVHRGIVGTMERFIAYLTEIYKGAFPTW---LAPLQVKIIPVN--NDAHGEYAQNVK 563

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  
Sbjct: 564 DQLMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESK 623

Query: 430 SLEEVINYASHRFSNN 445
           +L E ++  S   ++ 
Sbjct: 624 ALSEFVSELSADVASY 639


>gi|269123109|ref|YP_003305686.1| prolyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314435|gb|ACZ00809.1| prolyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 574

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+   +E P++AE  SH+LMLR  MI Q ++G+Y++LPLG K L  +  I+REE
Sbjct: 1   MRFSKSFIKTYKEVPKEAETISHQLMLRASMIKQLTRGVYTYLPLGLKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  A E+ +P LQ ADLW ESGR+ SYG E++RL DRN++  + GPTHEEV+ D+FR+
Sbjct: 61  LNKINAQEILMPVLQPADLWQESGRWFSYGAELMRLHDRNNRDFVLGPTHEEVIVDLFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSF LT E     YNK+  +
Sbjct: 121 IVTSYKDLPLNVYQIQTKFRDERRPRFGLMRGREFIMKDAYSFHLTQECLDREYNKVKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R GL    + A++G IGG  SHEF+VLA +GE  +  S       
Sbjct: 181 YCKIFERCGLNFRAVDADTGSIGGSESHEFMVLASSGEDDILYSDKSDYAA 231



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            M   +   N +    I++N     +            +K  D         ARGIEVGH
Sbjct: 360 HMKNFVGGANVEGHHYINMNLSDIHYDLVGDIRKAQKGDKALDGG---TLDIARGIEVGH 416

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           IF  G KYS  M+       G    V MG YGIG  RV AA IE + D  GIIWP S+AP
Sbjct: 417 IFKLGKKYSAAMNTKVLNDKGVAETVIMGCYGIGVSRVAAAAIEQNFDDFGIIWPKSIAP 476

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           + + LI +   D++ ++  EKIY+ +     DV +DD  E+ G +F  ADL+G PL+VIV
Sbjct: 477 YLVDLILVNVKDEIAKEVSEKIYSDMLLNNIDVIYDDRDEKAGFKFKDADLIGIPLKVIV 536

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G K   +  VEIKHR      ++ +E+VI+Y    F  N+
Sbjct: 537 G-KGAVNGMVEIKHRDGSFSGEIKVEDVISYIKE-FEKNK 574


>gi|229168558|ref|ZP_04296281.1| Prolyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614964|gb|EEK72066.1| Prolyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 566

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSNTSDYAA 231



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP SVAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKSVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|327314606|ref|YP_004330043.1| threonine--tRNA ligase [Prevotella denticola F0289]
 gi|326946255|gb|AEA22140.1| threonine--tRNA ligase [Prevotella denticola F0289]
          Length = 649

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 160/458 (34%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDLLRRL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +++
Sbjct: 287 LRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + PE  K  +   
Sbjct: 347 AYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPEQVKTEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F   G  +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFKTFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESEAA-- 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
                           A          E    +    K        +G  +  GT    Y
Sbjct: 450 -------------IKQACEEKGLKARVELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPNRFKLEYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   K+ A L         DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYAFKVKAYLDAHDLRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++  V ++ +  G +  M++E      +   ++    L
Sbjct: 611 AEGLVSMRQQGGGEQATMTMEAFAERINAEVADQLKTL 648


>gi|308068985|ref|YP_003870590.1| Prolyl-tRNA synthetase class II (Proline--tRNA ligase class II)
           [Paenibacillus polymyxa E681]
 gi|305858264|gb|ADM70052.1| Prolyl-tRNA synthetase class II (Proline--tRNA ligase class II)
           [Paenibacillus polymyxa E681]
          Length = 579

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 120/232 (51%), Positives = 158/232 (68%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  L  L+E P +AE+ SH+LMLR G I Q + G+Y+++PLG++ L  V  I+R+E
Sbjct: 1   MRQSQLLLTTLREAPAEAEVISHQLMLRGGFIRQLAAGMYTYMPLGRRVLRKVEQIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ  +LW ESGRYD YG E++RL DR+D+    GPTHEEV+T + R+
Sbjct: 61  MDRAGAGELLMPVLQPTELWQESGRYDVYGPELMRLQDRHDREFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++RSREFLMKDAYSFD   EG  H+Y  MF +
Sbjct: 121 EVNSYRKLPVTLYQIQTKFRDERRPRFGLLRSREFLMKDAYSFDAHWEGLDHTYWTMFRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG+  +HEF+ LAD GE  +          
Sbjct: 181 YHRIFTRCGLYFRAVEADAGAIGGEGETHEFMALADIGEDTIVACTCCEYAA 232



 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 4/202 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMS 299
                +  +        +D+ N    D  P+    +     GIE+GH+F  GTKYS  + 
Sbjct: 378 YHYRHVNPRRDIDLRHVADLRNVIEGDRCPQCNEGELKLHGGIEIGHVFKLGTKYSEKLG 437

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ATF  A G +  + MG YGIG  R+++A++E +HD  G+IWP ++APF++ +I I   D+
Sbjct: 438 ATFLDAFGTEQAMIMGCYGIGVSRILSAIVEQNHDQNGMIWPYALAPFQVHIIPISVKDR 497

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +     EK+Y +L   G +V  DD  E+ G +F  +DL+G P++++VG K     KVE+ 
Sbjct: 498 LQMQIAEKLYNQLQDRGVEVLLDDREERPGVKFKDSDLVGIPVRIVVG-KDAEHGKVELV 556

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R +  +E + +E++       
Sbjct: 557 ERKSCNKETIHIEDIERRILEL 578


>gi|329118470|ref|ZP_08247175.1| proline--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465411|gb|EGF11691.1| proline--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 571

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/226 (51%), Positives = 160/226 (70%), Gaps = 1/226 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASRFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+TDI R 
Sbjct: 61  MERAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS-KHSYNKMFV 179
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF    E   +  Y  M+ 
Sbjct: 121 EITSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYESLVRDGYQPMYD 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 AYCRIFDRLGLNYRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSD 226



 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 119/252 (47%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +RA+ G  GG        L   G      +   ++          D+            A
Sbjct: 326 IRAQFGADGGS-------LGPVGFKGKVYADFAVEKGADWVIGANDNGWHYTGFNFGRDA 378

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                +D+ N    D  P  K     ARGIEVGH+F    KYS  M+A F  ++GK   +
Sbjct: 379 AEPEFADLRNVVEGDPSPCGKGSLKLARGIEVGHVFQLRDKYSAAMNAAFLDSNGKSQIM 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R+VAA IE ++DG+GIIW D++APF+  ++ +        R+A +KIYA 
Sbjct: 439 EMGCYGIGITRIVAAAIEQNNDGRGIIWTDAMAPFQAVIVPMNYKKSDAVREAADKIYAE 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G   A ++LLG P ++++G + + + KVE   R     + +++
Sbjct: 499 LCAAGADVLLDDRDERAGVLLADSELLGIPHRIVIGDRGLKEGKVEYARRTDSEAQSVAV 558

Query: 432 EEVINYASHRFS 443
           EE          
Sbjct: 559 EEAAAKVLAALR 570


>gi|38570111|ref|NP_689547.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Homo sapiens]
 gi|189083596|sp|A2RTX5|SYTC2_HUMAN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|119622721|gb|EAX02316.1| threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|124376838|gb|AAI32672.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|187953219|gb|AAI36316.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
          Length = 802

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 154/437 (35%), Gaps = 44/437 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 391 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 450

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 451 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 509

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 510 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 568

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 569 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 616

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 617 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 659

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 660 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 713

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   
Sbjct: 714 LQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNK 773

Query: 425 IREDMSLEEVINYASHR 441
           I  ++ +   I+   + 
Sbjct: 774 IHGEILVTSAIDKLKNL 790


>gi|183221968|ref|YP_001839964.1| prolyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912036|ref|YP_001963591.1| prolyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226701304|sp|B0SDM9|SYP_LEPBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701305|sp|B0SM58|SYP_LEPBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167776712|gb|ABZ95013.1| Prolyl-tRNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780390|gb|ABZ98688.1| Prolyl-tRNA synthetase (Proline--tRNA ligase; ProRS) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 586

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/229 (46%), Positives = 151/229 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S Y +P  +E+P+DA +ASHKLM+R G+I + + G+YS+LPLG + L  +  I+R+E
Sbjct: 1   MKASSYLIPTAKEDPQDAVVASHKLMMRAGLIRKSAAGLYSYLPLGLRVLRKIEGIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G +E  +P L  +++W ESGR+D  GKEM RL DR+D     GPTHEE    + + 
Sbjct: 61  MDKAGGLEFQLPILTPSEIWKESGRWDKMGKEMFRLKDRHDNESCLGPTHEESFCVLVKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQI  KFRDE+RPRFGV+RSREF MKDAYSF L  E    +Y  M  +
Sbjct: 121 MVRSYKDLPINVYQIHTKFRDEIRPRFGVIRSREFTMKDAYSFHLDDESLDKTYQTMRKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y RIF  +GL +IP++A+SG +GG  S EF+V++  GE  +        
Sbjct: 181 YRRIFAGMGLTTIPVQADSGNMGGSASEEFMVVSPIGEETLTICPSCHY 229



 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 6/234 (2%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VS 278
              +    +F   +   + D  I+   +   +        D+   K+ D  P       +
Sbjct: 345 YIDALLDWNFSYIAGGNEIDHHIAGVQLTSIFKEEEVTKIDISQAKVGDPCPSCGTGLTA 404

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  G KYS     T     GK     MG YGIG  R +A VIE  +D KGI
Sbjct: 405 EKGIEVGHIFKLGQKYSKAFDITVLNDKGKATTTTMGCYGIGVNRCMATVIEQCNDEKGI 464

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP S+APF + L++I  +        E IY  L + G +V WDD     G +F  ++L+
Sbjct: 465 FWPVSIAPFTVCLVSIAKNPDDIAKI-ETIYKSLVESGIEVLWDDRDLGPGFKFKDSELI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDM---SLEEVINYASHRFSNNRPVL 449
           GFP+++ +G  F+  +++ I  R +   + +   + EE++ +   + S     +
Sbjct: 524 GFPIRITLGKGFLEKNEITILDRKSMAEDTLVYTTNEELVTHLKLKISQLEETI 577


>gi|254508639|ref|ZP_05120754.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219548396|gb|EED25406.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 571

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNTYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   + +
Sbjct: 546 YKNRRSGEKTAVAMADIVEHVKAQLA 571


>gi|156975521|ref|YP_001446428.1| prolyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166980171|sp|A7N1W0|SYP_VIBHB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156527115|gb|ABU72201.1| hypothetical protein VIBHAR_03253 [Vibrio harveyi ATCC BAA-1116]
          Length = 571

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNVYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   +  
Sbjct: 546 YKNRRSGEKTAVAMADIVEHVKAQLQ 571


>gi|229134626|ref|ZP_04263436.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228648887|gb|EEL04912.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 566

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|268532388|ref|XP_002631322.1| C. briggsae CBR-TRS-1 protein [Caenorhabditis briggsae]
          Length = 704

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 168/442 (38%), Gaps = 42/442 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +  + +E   RD      +  L     HQ S G   W P G    + +   IR++
Sbjct: 285 KQLKEWQKLQEEAAKRDHRKLGKEQDLF--FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQ 342

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P + +  LW  SG +  Y ++M ++    ++     P +      +F  
Sbjct: 343 YRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEKEE-FGLKPMNCPGHCLMFGH 401

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              +Y  LPF F    +  R+E+     G+ R R F   DA+ F    +       +   
Sbjct: 402 MPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIF-CRQDQISEEIKQCLD 460

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                + ++   +  +   + P G     E    A+   T+   +        P +    
Sbjct: 461 FLEYAYEKVFGFTFKLNLSTRPEGFLGKIETWDQAEADLTEALNATGRKWALNPGDG--- 517

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  + D+L  N + +   ++    F    ++     
Sbjct: 518 -----------------AFYGPKIDITIQDALKRNFQCATIQLD----FQLPNQF----D 552

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++    G K   V +    +G++  + A++  S+ GK   WP  ++P +  +I +    
Sbjct: 553 LSYFDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV---H 606

Query: 359 QVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  RD  + +  ++   G +V +D+  G+ +  Q   + L  F   +++G+K   +  V 
Sbjct: 607 ESVRDYAKDVKKQIFDAGFEVEYDEFCGDTMNKQVRNSQLAQFNFILVLGAKEKENGTVN 666

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R   +R ++ +E++++   
Sbjct: 667 VRTRDNAVRGEVPIEKLLSKFR 688


>gi|325915741|ref|ZP_08178043.1| prolyl-tRNA synthetase, family II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538005|gb|EGD09699.1| prolyl-tRNA synthetase, family II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 564

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L+++DR  +   Y PT EE   D  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKISDRKQQEFCYSPTAEEAAADFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 224



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GI+
Sbjct: 403 RGIEVGHVFQLGSQYAQALQATVIDESGKPAVLKMGCYGIGISRIVAAAIEQNHDDAGIL 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +   L   G D   DD G + G+ FA  +LL
Sbjct: 463 WPAPMAPWQVVVCVINPKQDAQVVAAAQALLDELLAAGLDAALDDRGLRPGAMFADMELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P +V+V  + ++    E + R     E++    + +  
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARTAEAAENLDKAGLFSRL 562


>gi|315186787|gb|EFU20545.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Spirochaeta
           thermophila DSM 6578]
          Length = 578

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L +  +H+ +  G+  W P G +    +    RE+   
Sbjct: 168 QYLEHLKEVEKRDHRRLGKELDLFS--VHEEAGPGLIYWHPKGARIRLEIENFWREQHLA 225

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  A LW  SG    Y + M    + +       P +      I+++ ++
Sbjct: 226 RGYEVLYTPHIGKAWLWETSGHLSFYKENMYAPMEVDKSDYYIKPMNCPFHIMIYKTRLR 285

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + ++   +R E      G++R R F   DA+ F  TPE  +    +     L
Sbjct: 286 SYRELPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHIF-CTPEQIEDEILETLRFSL 344

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   +     + P       E    A     +    +                 
Sbjct: 345 FMWKTFGFSDVKAYLSTRPDKSVGEPERWEQATESLRKAIEREGLDYEVDEGGG------ 398

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D+L    + S    +    F    ++      T+
Sbjct: 399 --------------AFYGPKIDIKVRDALGREWQTSTIQFD----FNLPERF----DITY 436

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG++     +    +G++     ++   + G   +W   +AP ++ +I +     V 
Sbjct: 437 VDADGREKRPYMVHRALLGSLERFFGILVEHYGGAFPVW---LAPVQVVVIPV---SDVF 490

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++   L + G     D   +++ ++   A     P  VIVG +      V ++ R
Sbjct: 491 AGYAQEVVRALREAGVRAEADLSADRMNAKIRKAQQEKIPYAVIVGQREQEGRTVSVRVR 550

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  ++L + +   + R    
Sbjct: 551 GGEQRNGVALGDFVEDVARRVHER 574


>gi|88607718|ref|YP_505783.1| threonyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|88598781|gb|ABD44251.1| threonyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 615

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 162/439 (36%), Gaps = 48/439 (10%)

Query: 7   FLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  +L+E    AE   H+ +   L    I   + G   W   G      +   +R++   
Sbjct: 208 YFKLLEE----AERRDHRKIAKDLEWFHIQNEALGQVFWHDKGWTLYRTIEEYLRKKLRE 263

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG ++ + + M  ++D+N + +   P +      IF+S  +
Sbjct: 264 NGYTEIKTPIMLDRKLWEKSGHWEKFRENMFIVSDQNSQELAIKPMNCPCHVQIFKSKTR 323

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +  +  R+E      G+MR R F   DA+ F  T +  +    K +   +
Sbjct: 324 SYKDLPIRMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHDQIRDEVRKFYKLLV 382

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +++  G K+I ++    P     S E   +A+         +         +   +   
Sbjct: 383 EVYNDFGFKNIDVKLSDRPEERIGSDEMWDMAERSLMDSMDDEGVKYTINKGDGAFYGPK 442

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +                               K    R  + G I      + LP  + A
Sbjct: 443 LEFTL---------------------------KDALGRNWQCGTI---QLDFVLPSRLGA 472

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+DG K H V +    +G +     ++  S+ G    W   +AP ++ ++ + ++  
Sbjct: 473 YYVGSDGNKHHPVMIHRAILGTLERFIGILIESYAGNLPAW---LAPVQLEILTVNSN-- 527

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +    +  +  +    V  +   E IG +   +     P+  +VGS   +D  V ++
Sbjct: 528 -ALEYATTLANKAREHNIRVELNSGEESIGQKIRKSIFNKIPVLWVVGSAETADCTVSVR 586

Query: 420 HRLTGIREDMSLEEVINYA 438
           H  T     M  ++ +   
Sbjct: 587 HYGTSNACSMEADKALKTL 605


>gi|73981327|ref|XP_860843.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 6
           [Canis familiaris]
          Length = 701

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 160/445 (35%), Gaps = 44/445 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E   +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R 
Sbjct: 287 LRAWEEWKGEAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRR 346

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PTL SA LW  SG ++ Y ++M  L    D  +   P +      +F    +S
Sbjct: 347 GFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLHHSTD-TLALKPMNCPAHCLMFAHRPRS 405

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R E      G+ R R F   DA+ F   P+  +            
Sbjct: 406 WRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEEEIQGCLDFLRS 464

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG     +   + P G                         D          ++  
Sbjct: 465 VYAVLGFSFR-LALSTRPSG-----------------FLGESCLWDQAEQVLQRALEEFG 506

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    DVH   L D+L    +     ++    F    ++       +K
Sbjct: 507 EPWDLKPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRF----DLQYK 555

Query: 304 GADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G  G  +  V +    +G++  +  V+  S+ GK   WP  ++PF++ +I + A  +   
Sbjct: 556 GQAGVLERPVLIHRAVLGSVERMLGVLAESYGGK---WPLWLSPFQVVVIPVGAEQE--- 609

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   +   RL   G     D D G  +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 610 EYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSKKTVNIRTR 669

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                 +  L E +        N R
Sbjct: 670 DNRQLGERDLTEAVQRLLE-LQNTR 693


>gi|186680962|ref|YP_001864158.1| prolyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|226701314|sp|B2J707|SYP_NOSP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|186463414|gb|ACC79215.1| prolyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 604

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 115/234 (49%), Positives = 149/234 (63%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGLYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ADLW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPADLWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF       K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEASLKETYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D     
Sbjct: 181 YKAYSNILRRSGLAFRAVEADSGAIGGSGSTEFMILAEAGEDEVLYTEDGKYAA 234



 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 1/213 (0%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           F   +    +  + +      +                    PE    SARGIE GHIF 
Sbjct: 385 FVTGANEAGYHVVSANWDEQFKLPERVVDIRKSRPGDRAIHNPEQTLQSARGIEAGHIFQ 444

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  M AT+    G++  + MG +G+G  R+  A +E S+D  GIIWP ++AP+  
Sbjct: 445 LGTKYSQAMGATYTNEQGEEKPLLMGCFGVGVSRLAQAAVEQSYDNDGIIWPVAIAPYHA 504

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +      D    +  +K+Y  L++ G +   DD  E+ G +F  ADL+G P +++ G +
Sbjct: 505 IVTIPNIKDAQQVEVAQKLYTELNQAGIETLLDDRDERAGVKFKDADLIGIPYRIVTG-R 563

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +++ KVE+  R T   +++ ++EV        
Sbjct: 564 AIANGKVEVVERATRKSQEIVIDEVTTTLQQWI 596


>gi|262402773|ref|ZP_06079334.1| prolyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262351555|gb|EEZ00688.1| prolyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 571

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKDGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVFS 224



 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 546 YKNRRQGEKEAVAMESIIDFIQAKLA 571


>gi|59800999|ref|YP_207711.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|81311217|sp|Q5F938|SYP_NEIG1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|59717894|gb|AAW89299.1| putative prolyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 570

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S       
Sbjct: 181 HCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAA 231



 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G T    +    +          +D            A      D+ N    D  P
Sbjct: 336 LGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESP 395

Query: 273 --ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             + +   ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE
Sbjct: 396 DGQGRLKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++D KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G
Sbjct: 456 QNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAG 515

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 516 VLLNDSELLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIVARVTASLN 569


>gi|312875562|ref|ZP_07735563.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|311088816|gb|EFQ47259.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 643

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 163/436 (37%), Gaps = 37/436 (8%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D +   H+ + R   +     +   G+  W+P G      +   I +++   G   +  P
Sbjct: 234 DIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + D +  SG +  Y ++M    D  D  M+   P +      I+  HI+SYR LP  
Sbjct: 294 VLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIR 353

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++    +
Sbjct: 354 IAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDI 412

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T  + + D M            D + L  +  
Sbjct: 413 TDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEA 458

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + +   +L  ++ +S   ++    F    +++L    ++ G DG++H
Sbjct: 459 --EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----SYVGKDGEEH 508

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M     +G M    A +   + G    W   +AP ++ +I +   +    +  + + 
Sbjct: 509 RPVMVHRGIVGTMERFIAYLTEIYKGAFPTW---LAPLQVKIIPVN--NDAHGEYAQNVK 563

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  
Sbjct: 564 DQLMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESK 623

Query: 430 SLEEVINYASHRFSNN 445
           +L E ++  S   ++ 
Sbjct: 624 ALSEFVSELSADVASY 639


>gi|194364305|ref|YP_002026915.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|226701341|sp|B4SJ64|SYP_STRM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194347109|gb|ACF50232.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 567

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQTFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVFS 224



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +   ARGIEVGH+F  G  Y+  + AT    +GK   + MG YGIG  RVVAA IE +HD
Sbjct: 401 ELKIARGIEVGHVFQLGRTYARALDATVLDENGKAAVMAMGCYGIGISRVVAAAIEQNHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GIIWPD++AP+++ +  I    D    DA   +   L   G D   DD G + G+ FA
Sbjct: 461 DAGIIWPDAMAPWQVVVCVINPKGDAAVADAATNLLQELRDAGLDAALDDRGLRPGAMFA 520

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +L+G P +V+V  + ++    E + R     E +    ++    
Sbjct: 521 DMELIGIPHRVVVSERGLAAGTYEYRSRRASEAESLDKATLLQRLQ 566


>gi|317052582|ref|YP_004113698.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316947666|gb|ADU67142.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 657

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 150/449 (33%), Gaps = 45/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L      + +     + P G    + +   IRE     
Sbjct: 235 EYLFFLEEAKKRDHRKLGKELDLFH-FDPEVAVASPFFHPKGTVVYNQLLEFIREMYRYY 293

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +   +LW  SG YD+Y + M    + + +     P +      I+ +  +S
Sbjct: 294 GYGEVITPQVMDVELWKRSGHYDNYVENMY-FTELDGQHNALKPMNCPTHVMIYGASSRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +       R E      G+ R R F   DA+ F   P+  +     +    L+
Sbjct: 353 YRDLPVRYADFGRLHRYERSGVVQGLTRVRTFCQDDAHIF-CRPDQIEDEIKNLIDLILK 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +     + I +   + P     S E    A++       S          +   +   I
Sbjct: 412 TYKVFDFEDIAIGLSTRPEKSIGSDEIWQKAESALAAALNSLSVKFSINEGDGAFYGPKI 471

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
                                        + +    R  ++  +      +S+P    A+
Sbjct: 472 DF---------------------------QVRDAIRRSWQLATV---QLDFSMPQRFGAS 501

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    G+    V +    +G++     +      G    W   +AP + S+I +      
Sbjct: 502 YVDEQGQRQAPVMIHRAVLGSIERFMGLYLEHTAGALPFW---LAPVQCSIIPVN---DE 555

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C+++   L+++G  V  D   E +G +   +     P  ++VG K + +    ++ 
Sbjct: 556 LLPFCQQLRQILTRLGYRVEVDASSESMGKKIRRSQTQKHPYTLVVGKKELEERIFAVRA 615

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
                    S EE++        NNR  L
Sbjct: 616 YGHKDTFASSWEELLERFHQE--NNRARL 642


>gi|227485697|ref|ZP_03916013.1| threonine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236252|gb|EEI86267.1| threonine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 640

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 147/428 (34%), Gaps = 41/428 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      ++ L     H+   G   + P G   ++ +    R+  + +G  E+  P + 
Sbjct: 242 RDHRKIGKEMDLFA--FHEEGPGFPFFHPNGMILMNELLGWWRDVLDHSGYGEIKTPLIL 299

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + DLW  SG +D Y + M      +D+     P +       + S   SYR+LP    + 
Sbjct: 300 NEDLWHRSGHWDHYKENMY-FTKIDDEDYAIKPMNCPGSVLTYASRQHSYRDLPIRLAEF 358

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R EL     G+ R R F   DA+ + L P   K    KM      ++   G K   
Sbjct: 359 GQVHRHELSGTLHGLFRVRTFTQDDAHVYCL-PSQIKEEVYKMIDLADLLYSTFGFKY-T 416

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           M   + P                           DF         ++      I     A
Sbjct: 417 MELSTRP-----------------DDYMGDIKDWDFAEEQLKLALEERGIDYQINPGDGA 459

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQ 313
            Y    D H   L D+     +     ++    F     +       +   +G K   V 
Sbjct: 460 FYGPKIDFH---LLDAAKREWQCGTIQLD----FQLPANF----ELEYIDENGEKKRPVM 508

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++     V+     G+  +W   + P ++ +I +        D   +I   + 
Sbjct: 509 LHRALLGSVERFIGVLTEHFAGRFPLW---INPRQVEVIPVA---DRFADKAHEIAKEIE 562

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K G  V  D+  E +G +   A ++     ++VG K +    + +++R     +D++L +
Sbjct: 563 KAGFRVGVDERSEGVGYKIRSAQMMRTNYMLVVGDKEIESGLLTVRNRDGEETKDVNLAD 622

Query: 434 VINYASHR 441
            I   S  
Sbjct: 623 FIAKISEE 630


>gi|223997660|ref|XP_002288503.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220975611|gb|EED93939.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 592

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 161/442 (36%), Gaps = 41/442 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIRE 59
           ++ K +   ++E   RD  +   KL L +  I +    G+  W P G      +    +E
Sbjct: 163 KQLKLYKKRMEEAKKRDHRVLGKKLDLFS--IQEDAGGGLVFWHPKGSTVRRKIEDFWKE 220

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                    +  P + + DLW  SG YD Y + M    D  ++     P +      +F+
Sbjct: 221 AHIAQDYDIVYTPHIANLDLWKTSGHYDFYREGMFDQMDVENEVYQIKPMNCPFHCLMFK 280

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             I+SYR+LPF + ++   +R E      G+MR R F   DA+ F L PE  +     + 
Sbjct: 281 DSIRSYRDLPFRWGELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCL-PEQLQSEIVDVL 339

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I  R G     +   + P     S +    A            +           
Sbjct: 340 KLTKDILSRFGFNKYELMVSTRPEKSVGSDQIWDDATKALVGALDELGWEYGTDEGGG-- 397

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + K+ D++    + S    +    F    ++    
Sbjct: 398 ------------------AFYGPKIDLKIKDAIGRTWQCSTVQCD----FNLPERF---- 431

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  A+G K+  + +     G++     ++  +  G    W   +AP ++ L+ +   
Sbjct: 432 DLEYVSAEGKKERPIMVHRAIFGSIERFFGILVENTAGDLPFW---LAPTQLKLLPVT-- 486

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D C+++  + +K+G  V  D   E++  Q   A+    P+  +VG K + +  + 
Sbjct: 487 -DAVVDYCKEVAKKANKMGLRVEVDRGAERLAKQIRNAEQSRIPVMAVVGMKEMEEGTLA 545

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R  G     +++++++   
Sbjct: 546 LRSRKLGDLGSFAVDDLLSELK 567


>gi|167039496|ref|YP_001662481.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300915254|ref|ZP_07132569.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307725178|ref|YP_003904929.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|226701350|sp|B0K5F2|SYP_THEPX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166853736|gb|ABY92145.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300888978|gb|EFK84125.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307582239|gb|ADN55638.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 570

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/241 (48%), Positives = 158/241 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSIGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 D 241
           +
Sbjct: 241 N 241



 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 109/232 (46%), Gaps = 4/232 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            GE  +    +           +  D    N +           +D+ N    D  P   
Sbjct: 340 KGEVMIIVDNEIPQMRNFIVGANETDYHIKN-VNYGRDFKADVVADIKNVIEGDKCPRCG 398

Query: 276 --RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  H
Sbjct: 399 SPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHH 458

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F 
Sbjct: 459 DEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFN 518

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ADLLG P+++ VG K V D  VEIK R     E++ + +V+    +     
Sbjct: 519 DADLLGIPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVVEKVKNIIKEK 569


>gi|163941557|ref|YP_001646441.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|226731430|sp|A9VT57|SYP_BACWK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163863754|gb|ABY44813.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 566

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP SVAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKSVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|317129168|ref|YP_004095450.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315474116|gb|ADU30719.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 566

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 123/225 (54%), Positives = 162/225 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S +  P L++ P DAE+ SH+LMLR G+I Q + G+YS LPLG KAL  V AI+REE
Sbjct: 1   MKQSTFLAPTLRDVPSDAEVTSHQLMLRAGLIRQSTSGVYSLLPLGLKALKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA EM +P +Q ++LW ESGR+++YG E++RL DR+ +    GPTHEEV+T + R 
Sbjct: 61  MNRAGAQEMLMPAIQQSELWKESGRWEAYGPELMRLHDRHGREFALGPTHEEVITTVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ KFRDE RPRFGV+RSREFLMKDAYSFD + EG   SYNKM+ +
Sbjct: 121 DVKTYKKLPMTLYQIQTKFRDERRPRFGVLRSREFLMKDAYSFDTSQEGLDESYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S 
Sbjct: 181 YTNIFTRCGLDFRAVVADSGAMGGKDTHEFMVLSEIGEDTIAYSD 225



 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 121/256 (47%), Gaps = 17/256 (6%)

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           LK+IP     GP+  D + E +     G              +        +     ++ 
Sbjct: 326 LKTIPGYI--GPVNIDGTIEVVADHAIG------------ALVNGICGANKEDTHYVNVN 371

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADG 307
                  +  +D+ N +  D  P+ K       GIEVGH+F  GT+YS  M A +   +G
Sbjct: 372 MDRDFKVSQFADLRNIQEGDPSPDGKGTIRFKEGIEVGHVFKLGTRYSEAMGAMYLDENG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+  + MG YGIG  R +AA+IE  HD  GIIWP SV PF + ++ I    +  +   E+
Sbjct: 432 KNKPMIMGCYGIGVTRTLAAIIEQFHDESGIIWPTSVTPFDVHIVPINMKQEEQKQLAEE 491

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L++   +V  DD  E+ G +F  ADL GFP++V VG K  ++  VE+K R TG   
Sbjct: 492 LYNELTEERLEVLIDDRPERPGVKFKDADLYGFPVRVTVGKK-ANEGVVELKVRKTGETL 550

Query: 428 DMSLEEVINYASHRFS 443
           ++  ++++        
Sbjct: 551 EVHKKDLLRTMKELLK 566


>gi|312871712|ref|ZP_07731800.1| threonine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872982|ref|ZP_07733042.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312874225|ref|ZP_07734259.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|315653646|ref|ZP_07906566.1| threonine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|325912186|ref|ZP_08174584.1| threonine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|329920107|ref|ZP_08276938.1| threonine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|311090295|gb|EFQ48705.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311091504|gb|EFQ49888.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092654|gb|EFQ51010.1| threonine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|315489008|gb|EFU78650.1| threonine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|325476136|gb|EGC79304.1| threonine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|328936561|gb|EGG33005.1| threonine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 643

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 163/436 (37%), Gaps = 37/436 (8%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D +   H+ + R   +     +   G+  W+P G      +   I +++   G   +  P
Sbjct: 234 DIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + D +  SG +  Y ++M    D  D  M+   P +      I+  HI+SYR LP  
Sbjct: 294 VLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIR 353

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++    +
Sbjct: 354 IAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDI 412

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T  + + D M            D + L  +  
Sbjct: 413 TDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEA 458

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + +   +L  ++ +S   ++    F    +++L    ++ G DG++H
Sbjct: 459 --EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----SYVGKDGEEH 508

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M     +G M    A +   + G    W   +AP ++ +I +   +    +  + + 
Sbjct: 509 RPVMVHRGIVGTMERFIAYLTEIYKGAFPTW---LAPLQVKIIPVN--NDAHGEYAQNVK 563

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  
Sbjct: 564 DQLMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESK 623

Query: 430 SLEEVINYASHRFSNN 445
           +L E ++  S   ++ 
Sbjct: 624 ALSEFVSELSADVASY 639


>gi|156354210|ref|XP_001623293.1| predicted protein [Nematostella vectensis]
 gi|156209976|gb|EDO31193.1| predicted protein [Nematostella vectensis]
          Length = 559

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 154/449 (34%), Gaps = 47/449 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++E  +   +A    H+ + R       H+ S G   +LP G    + +   I+E+  + 
Sbjct: 144 MKEWKKFQEEAAKRDHRKIGRDQELFFFHELSPGSCFFLPKGAVIYNTLINFIKEQYWKR 203

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S  LW  SG +  Y + M        ++    P +      +F    +S
Sbjct: 204 GFQEVVSPNIYSTKLWETSGHWQHYSEHMFSFEVEK-ESYALKPMNCPGHCLMFDHRPRS 262

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F  T +               
Sbjct: 263 WRELPLRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTADQIGQEIISCLDFLKH 321

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+                 P +        
Sbjct: 322 VYGVFGFTF-KLNLSTRPEKYLGKIELWNQAEKELEAALNGFGQAWVLNPGDG------- 373

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + ++ D+L    + +   ++    F    +++L       
Sbjct: 374 -------------AFYGPKIDIQIQDALRRYHQCATIQLD----FQLPERFNLTYVTGEG 416

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   V +    +G++  + A++  S  GK   WP  ++P +  +I I        +
Sbjct: 417 DE--RKRPVIVHRAILGSVERMIAILTESFGGK---WPFWLSPRQAIVIPIGPK---YDE 468

Query: 364 ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +K+ + +   G  V  D D G  +  +   A L  +    +VG K  +   V ++ R 
Sbjct: 469 YAQKVMSDILAAGYHVDADLDHGTTLNKKVRNAQLAQYNFIFVVGEKEATTGTVNVRTRD 528

Query: 423 TGIREDMSLEEVINYA----SHRFSNNRP 447
             +  + S+E V+N      S R  N+  
Sbjct: 529 NKVHGEFSVEAVLNKFATLTSERVRNSEE 557


>gi|312795091|ref|YP_004028013.1| Prolyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312166866|emb|CBW73869.1| Prolyl-tRNA synthetase (EC 6.1.1.15) [Burkholderia rhizoxinica HKI
           454]
          Length = 589

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R GMI + + GIY+++P+G +++  V AI+REE
Sbjct: 12  MKASRFFIGTLKEAPADAEIVSHQLMVRAGMIRRVAGGIYNYMPIGLRSIRKVEAIVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ES R++ YG E+LR+ DR+D+  + GPTHEEV+TDI R 
Sbjct: 72  MNRAGAVELLMPAVQPAELWQESSRWEQYGPELLRVKDRHDRDFVVGPTHEEVVTDIARK 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 132 EIKSYRQMPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDRDRAGLQLSYQKMYDA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A++G IGG  SHEF V+A TGE  +   
Sbjct: 192 YVRIFTRLGLEFRAVAADNGAIGGTGSHEFHVIAATGEDAIAYC 235



 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + S    +        +      P    +D+ N +  D  P+ +      RGI
Sbjct: 367 ANMSDFVVGSNEMGYH----TTGVNWGRDLPEPEVADLRNVRKGDPSPDGRGELDLCRGI 422

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF   +GK   + MG YGIG  R++ A IE + D +GIIWP+
Sbjct: 423 EVGHVFQLGTKYSEAMGATFLDENGKPAPMMMGCYGIGITRILGAAIEQNFDERGIIWPE 482

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF + L  +        R+   K+Y  L   G DV  DD GE+ G  FA  +L+G P
Sbjct: 483 AIAPFHLVLCPMGYERSDAVREQAHKLYDELLGAGMDVILDDRGERPGVMFADWELIGVP 542

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++++G + + + K+E + R       + LE+   +   R  
Sbjct: 543 HRLVIGERGLKEGKIEYQGRRDVEPTLLPLEQAAAWVVERVR 584


>gi|296089916|emb|CBI39735.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 159/444 (35%), Gaps = 43/444 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K ++  ++E    A+   H+L+         H  S G + +LP G +  + +   I+
Sbjct: 277 KRLKEYIARIEE----AKKYDHRLLGVKQELFFCHPLSPGSWFFLPHGGRIYNKLMEFIK 332

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +    G  E+  PT+ +  LW  SG   +Y + M        +     P +      +F
Sbjct: 333 AQYRERGYHEVFSPTMYNMQLWETSGHAANYKENMFVFEVEK-QEFGLKPMNCPGHCLMF 391

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+E      G+ R R F   DA+ F       K     +
Sbjct: 392 EHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRESQIKDEVMGV 450

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  ++  G     ++  + P       E    A+   T+              +  
Sbjct: 451 LDFINYAYNIFGFTY-ELKLSTRPEKYLGDLETWEKAEAALTEALNQSGKPWEINEGDG- 508

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L    + +   ++    F   +++ L 
Sbjct: 509 -------------------AFYGPKIDISVSDALNRKFQCATLQLD----FQLPSRFDLS 545

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +    ++  V +    +G++  + A++   + GK   WP  ++P +  +  +   
Sbjct: 546 YSA--EDEAKRERPVMIHRAILGSVERMFAILLEHYKGK---WPFWLSPRQAIVCPVSEK 600

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q       ++  ++ + G  V  D    +I  +   A L  +   ++VG +  +  +V 
Sbjct: 601 SQ---PYALQVRDQIHQAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEANTRQVS 657

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R  G    MS+E +++Y    
Sbjct: 658 VRVRDKGDHSVMSMENLLSYFKSE 681


>gi|320120274|gb|EFE27922.2| proline--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 596

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 164/246 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ +LP L+E P DAE+ SH+L+LR G+I +   G+YS+LPLG++ L  +  +IREE
Sbjct: 24  MKMSRMYLPTLREVPSDAEVISHQLLLRAGLIRKLVSGVYSYLPLGKRVLAKIERVIREE 83

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   + E+ +  +Q ++LW ESGR++++G EM RL DRN++    GPTHEE+ T + R 
Sbjct: 84  MDAANSQEVLMSAIQPSELWKESGRWENFGPEMFRLYDRNEREFCLGPTHEEIFTSLVRD 143

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ K+RDE RPRFGV+R+REF+MKDAY+FD  P+G K SY +M+ +
Sbjct: 144 ELKSYKQLPLSLYQIQTKYRDEKRPRFGVIRAREFIMKDAYTFDRDPDGMKQSYQEMWEA 203

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RL +K   +  +SG +GG  SHEF  +A++GE+ V  ++         +     
Sbjct: 204 YTKIFDRLHMKYRVVEGDSGAMGGSDSHEFTAMAESGESTVMYAEGCDYAATDEKAECIF 263

Query: 241 DIISLN 246
           ++   +
Sbjct: 264 ELPVQD 269



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 1/169 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +  S RGIEVG+IF  GTKYS  ++ T+   DGK   V MGS+GIG  R +AA+IE ++D
Sbjct: 425 RLKSDRGIEVGNIFQLGTKYSDSLNLTYLDQDGKSKKVWMGSHGIGVSRTMAAIIEQNYD 484

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KGIIWP  VAP+ I +  + A  +      E++Y   +K+G +V +DD  E+ G +F  
Sbjct: 485 EKGIIWPLVVAPYHILITVVNAKKEDQMQLGEQLYQEYTKLGYEVLFDDRNERAGVKFND 544

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ADL+G P+++ VG +   +  VE   R  G +E++ + E+       F+
Sbjct: 545 ADLIGIPIRINVGRR-AEEGIVEFSLRRGGEKEEIPVSEIAQKVKDEFA 592


>gi|303325499|ref|ZP_07355942.1| threonine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302863415|gb|EFL86346.1| threonine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 648

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 153/437 (35%), Gaps = 41/437 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L        + G+  WLP G      +    R+E  + G
Sbjct: 234 YLKQLEEAKRRDHRKLGRELSLFA-FQEDVAPGMVFWLPKGMLVRAILEDFWRKEHLKRG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L   + W  SG YD Y + M       D A    P +      I+++ ++SY
Sbjct: 293 YDMVQGPQLLRVETWQRSGHYDHYRENMY-FTRIEDDAYGIKPMNCIAHMLIYKNELRSY 351

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++ +  R E      G++R R+F   DA+     PE  +     +      +
Sbjct: 352 RDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCA-PEQLEGEILGVIHLIRDL 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            H  G +   +   + P     + E   LA     Q              +         
Sbjct: 411 MHLFGFQY-KVAVSTRPESSIGTDEAWELATNALIQAVEKAGLPYEINAGDG-------- 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + +L D +    + S   ++    F    ++      T+ G
Sbjct: 462 ------------AFYGPKIDVRLLDCIGREWQCSTIQVD----FTLPERF----DLTYVG 501

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   M     +G++     V+   + G    W   +AP +  L+ +    +    
Sbjct: 502 QDGERHRPVMVHRAIMGSLERFIGVLIEQYAGALPAW---LAPEQARLLTVT---EAGDA 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++   L  +G  V  D   E++G +   A +   P  ++VG K V    V ++ R  
Sbjct: 556 TVERMRGELQALGIRVTADTRNEKLGFKVREAQVAKVPYILVVGEKEVQADGVNVRLRSG 615

Query: 424 GIREDMSLEEVINYASH 440
                 S+ +V      
Sbjct: 616 ENLGLKSIADVAALIRA 632


>gi|321475248|gb|EFX86211.1| hypothetical protein DAPPUDRAFT_127463 [Daphnia pulex]
          Length = 688

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 160/446 (35%), Gaps = 47/446 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +  I +E    A    H+ + R       H+ S G   + P G    + +   +R
Sbjct: 272 KQLKEWQRIQEE----AAKRDHRKLGREYELFFFHELSPGACFFTPHGAHIYNTLVEFLR 327

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F
Sbjct: 328 NEYKQRGFQEVITPNVYNSKLWLTSGHWQHYSENMFSFEVEKETY-AMKPMNCPGHCLLF 386

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++S+R LP       +  R+EL     G+ R R F   DA+ F  T    K   N  
Sbjct: 387 DHRVRSWRELPLRLADFGVLHRNELSGALSGLTRVRRFQQDDAHIF-CTMGQIKSEINGA 445

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     +R  + P       E    A+   T+            P +  
Sbjct: 446 LAFLRDVYKIFGFTF-QLRLSTRPEKFLGEIETWNHAEKELTESLNEFGETWLLNPGDG- 503

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L    + +   ++    F    +++L 
Sbjct: 504 -------------------AFYGPKIDITIMDALRRPHQCATIQLD----FQLPIRFNLS 540

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                    G K+  V +    +G++  + A++  S+ GK   WP  ++P +  ++ +  
Sbjct: 541 F----INEAGEKEKPVIIHRAILGSVERMIAILTESYAGK---WPFWLSPRQCVVVPVGP 593

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              V     +++  +++  G  +  D D G+ +  +     L      ++VG K  ++  
Sbjct: 594 ---VFDGYAQQVREQIAAAGFRITADIDAGDTMNKKIRNGQLSQHNFILVVGEKEQTNGT 650

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V I+ R   +  + ++ +VI   +  
Sbjct: 651 VNIRTRDNKVHGEHTIAKVIERFTQL 676


>gi|218190922|gb|EEC73349.1| hypothetical protein OsI_07557 [Oryza sativa Indica Group]
          Length = 674

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 153/449 (34%), Gaps = 42/449 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K ++   +E  R D       L L +  I +    G+  W P G      +    ++   
Sbjct: 264 KAYIHFKEEAKRRDHRRLGLDLDLFS--IQEDAGGGLVFWHPKGAIIRHVLEDSWKQIHL 321

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  A+LW  SG  D Y + M    D  D+     P +      +++  +
Sbjct: 322 QRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVEDELYQLRPMNCPYHILVYKRKL 381

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +  K     +    
Sbjct: 382 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDLT 440

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I  + G +   +   + P     S +    A          K +              
Sbjct: 441 EQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLALKDALEDKGWEYKVDEGGG----- 495

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D+L    + S   ++    F    ++      T
Sbjct: 496 ---------------AFYGPKIDLKIEDALGRKWQCSTVQVD----FNLPERF----DIT 532

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ++  K   + +    +G++     V+   + G   +W   +AP +  ++ +  ++  
Sbjct: 533 YVNSNSEKKRPIMIHRAILGSLERFFGVLIEHYAGDFPLW---LAPIQARILPVTDNE-- 587

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++ + L   G        GE++      A+    PL  +VG K V    + I+ 
Sbjct: 588 -LQYCNEVASELKSKGIRAEV-CHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRS 645

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R +G    M ++E         +N    L
Sbjct: 646 RHSGEIGTMPVDEFFRRMQLAIANKSSSL 674


>gi|188994826|ref|YP_001929078.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|238691475|sp|B2RJD6|SYT_PORG3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188594506|dbj|BAG33481.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 653

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 154/438 (35%), Gaps = 40/438 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L          G+  WLP G +    +   +++ Q   G  ++  P
Sbjct: 239 AKKRDHRKIGKELELFA-FSQNVGAGLPLWLPRGTQLRLRLEDFLKQIQKHFGYQQVITP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + + +L++ SG Y  YG++  R     +  +  +  P +     +IF+    SYR+LP 
Sbjct: 298 HIGNKNLYITSGHYAKYGQDSFRPINTPQEGEEFMLKPMNCPHHCEIFKITPHSYRDLPI 357

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F   P+  K  + K+      IF  L 
Sbjct: 358 RLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQLKEEFCKVMDIIFIIFKALD 416

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            K+   +                  D    + +   +           +  +   L +++
Sbjct: 417 FKNFEAQISLR--------------DKVNREKYIGSEENWERAERAIIEACEEKGLPAVI 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
           E   A +                  K    R  ++G I      Y+LP      + G D 
Sbjct: 463 EYGEAAFYGPKLDF---------MVKDALGRRWQLGTI---QVDYNLPERFDLEYTGEDN 510

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H  V +     G+M    AV+     GK  +W   + P ++ ++ +    +   +   
Sbjct: 511 KKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQVVVLPV---SERFNEYAH 564

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   L++    V  DD  E++G +    +L   P  +IVG     + +V ++ +  G  
Sbjct: 565 RVAKELNQRDIRVQVDDRNEKVGRKIRDNELKRIPYMLIVGENESREEEVSVRKQGEGDM 624

Query: 427 EDMSLEEVINYASHRFSN 444
             M +            +
Sbjct: 625 GIMKITTFAELIEKEVDD 642


>gi|121609349|ref|YP_997156.1| prolyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|152112961|sp|A1WKI1|SYP_VEREI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121553989|gb|ABM58138.1| prolyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 581

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L++ P DAE+ SH+LM+R G+I +   GIYS++P+G + L  + AI+REE
Sbjct: 1   MKASRFFVSTLKDAPADAEVVSHQLMMRAGLIKKLGAGIYSYMPMGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAELWQETGRFDKMGPELLRIQDRHGRDFVVQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  +K SY  M  +
Sbjct: 121 ELRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPAAAKASYLVMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +          
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVVAATGEDAIVYCPQSDYAA 231



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 5/218 (2%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVG 285
           M   I   N     +  +N    +        +D+ N    D  P+ K      RGIEVG
Sbjct: 364 MADWICGANEAHWHLTGVN--WGRDLPEPDMVADLRNVVAGDRSPDGKGVLAIERGIEVG 421

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           H+FY GTKYS  M+A+F   +GK   ++MG YGIG  R+ AA IE +HD +GIIWPD++A
Sbjct: 422 HVFYLGTKYSRAMNASFLDENGKPQPLEMGCYGIGITRLPAAAIEQNHDARGIIWPDAIA 481

Query: 346 PFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           PF   +  I        + A +K+YA     G DV  DD GE+ G+ FA  +L+G P +V
Sbjct: 482 PFTAVICPIGMERSAAVQAAADKLYADFLAAGIDVLLDDRGERPGAMFADWELIGVPHRV 541

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++  + + + ++E +HR       ++  +++ +   R 
Sbjct: 542 VISERGLKEDQLEYQHRRDQSATKVAAADILAHVKGRM 579


>gi|55981844|ref|YP_145141.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|7388285|sp|P56881|SYT_THET8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6689424|emb|CAB65483.1| threonyl-tRNA synthetase [Thermus thermophilus]
 gi|55773257|dbj|BAD71698.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 659

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 49/453 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L   +I     KG+  WLP G    + + A +REEQ R
Sbjct: 240 EYLWQLEEAKKRDHRRLGRELELF--LIDPLVGKGLVLWLPKGNVVREELMAFMREEQVR 297

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR---LADR-NDKAMIYGPTHEEVMTDIFR 119
            G   ++ P + S +L+  SG Y  Y +         +R  ++  +  P +      I+ 
Sbjct: 298 RGYQLVTTPHIGSLELYKTSGHYPYYAESQFPPISFKERGEEEEYLLKPMNCPHHIRIYA 357

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SYR LP    +    +R E      G+ R R F   DA+ F  TPE  K  +  + 
Sbjct: 358 YRKRSYRELPLRLAEFGTVYRYEKAGELLGLTRVRGFTQDDAHIF-CTPEEVKGEFLGVL 416

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV--FCSKDFMDFPIPSEN 236
              L++F  LGLK    R        D            E Q+    ++  + + +   +
Sbjct: 417 DLVLKVFATLGLKDYRARIGVRDPKSDKYVGDEAKWALAERQIEEAAAEAGLRYTVEEGD 476

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             F        +                          K    R  ++G I      Y+L
Sbjct: 477 AAFYGPKLDFVV--------------------------KDALGREWQLGTI---QVDYNL 507

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P     T+ G DG++H  V +     G++     ++     G   +W             
Sbjct: 508 PERFGLTYVGKDGEEHRPVMLHRAPFGSLERFIGILIEHFAGDFPLWLAP------VQAV 561

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +   D   ++  RL + G     D   E++ ++   A++   P  ++VG +  ++
Sbjct: 562 VVPVSEKQEDYAREVAGRLKEAGLRAEADTRPERMQARIRDAEVQKVPYILVVGEREKAE 621

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             V ++ R  G    M L   +  A   +   R
Sbjct: 622 GAVSVRRRKKGNLGTMPLAAFLEGALREYRERR 654


>gi|34540737|ref|NP_905216.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|73919814|sp|Q7MVQ5|SYT_PORGI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34397051|gb|AAQ66115.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 653

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 154/438 (35%), Gaps = 40/438 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L          G+  WLP G +    +   +++ Q   G  ++  P
Sbjct: 239 AKKRDHRKIGKELELFA-FSQNVGAGLPLWLPRGTQLRLRLEDFLKQIQKHFGYQQVITP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + + +L++ SG Y  YG++  R     +  +  +  P +     +IF+    SYR+LP 
Sbjct: 298 HIGNKNLYITSGHYAKYGQDSFRPINTPQEGEEFMLKPMNCPHHCEIFKITPHSYRDLPI 357

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F   P+  K  + K+      IF  L 
Sbjct: 358 RLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CRPDQLKEEFCKVMDIIFIIFKALD 416

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            K+   +                  D    + +   +           +  +   L +++
Sbjct: 417 FKNFEAQISLR--------------DKVNREKYIGSEENWERAERAIIEACEEKGLPAVI 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
           E   A +                  K    R  ++G I      Y+LP      + G D 
Sbjct: 463 EYGEAAFYGPKLDF---------MVKDALGRRWQLGTI---QVDYNLPERFDLEYTGEDN 510

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H  V +     G+M    AV+     GK  +W   + P ++ ++ +    +   +   
Sbjct: 511 KKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQVVVLPV---SERFNEYAH 564

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   L++    V  DD  E++G +    +L   P  +IVG     + +V ++ +  G  
Sbjct: 565 RVAKELNQRDIRVQVDDRNEKVGRKIRDNELKRIPYMLIVGENESREEEVSVRKQGEGDM 624

Query: 427 EDMSLEEVINYASHRFSN 444
             M +            +
Sbjct: 625 GIMKITTFAELIEKEVDD 642


>gi|197097988|ref|NP_001125825.1| threonyl-tRNA synthetase, cytoplasmic [Pongo abelii]
 gi|55729334|emb|CAH91401.1| hypothetical protein [Pongo abelii]
          Length = 563

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 43/445 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 146 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 205

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 206 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 264

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 265 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 323

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 324 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 377

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 378 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 416

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 417 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 470

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  + L ++VG K      V I+ 
Sbjct: 471 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNLILVVGEKEKISGTVNIRT 530

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + ++ E I        + 
Sbjct: 531 RDNKVHGERTISETIERLQQLKESR 555


>gi|17232545|ref|NP_489093.1| prolyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|81852728|sp|Q8YM83|SYP_ANASP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|17134191|dbj|BAB76752.1| prolyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 604

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPSDAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEDSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y  +  R GL   P+ A+SG IGG  S EF+VLA+ GE +V  + D     
Sbjct: 181 YQAYSNMLRRAGLAFRPVEADSGAIGGSGSTEFMVLAEAGEDEVLYTDDGKYAA 234



 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 1/168 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIEVGHIF  GTKYS  + AT+    G++  + MG YG+G  R+  + +E S+D 
Sbjct: 431 LKSARGIEVGHIFQLGTKYSQALGATYTNEQGEEKPLVMGCYGVGVSRLAQSAVEQSYDK 490

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP+   +     +D    +  EK+Y  L++ G +   DD  E+ G +F  A
Sbjct: 491 DGIIWPVAIAPYHAIVTIPNINDAQQVEIAEKLYTELNQSGVETLLDDRNERAGVKFKDA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P +++ G + +++ KVEI  R T   +++ ++EVI        
Sbjct: 551 DLIGIPYRIVTG-RAITNGKVEIVERATRQSQEIPIDEVITTLQQWIR 597


>gi|311744140|ref|ZP_07717946.1| proline--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313270|gb|EFQ83181.1| proline--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 593

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 104/257 (40%), Positives = 151/257 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FL  L+++P DAE+ SH+L++R G + + + GIYSWLPLG K L  V AI+REE
Sbjct: 1   MRMSRLFLRTLRDDPADAEVPSHRLLVRAGYVRRVAPGIYSWLPLGLKVLARVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  S R+  YG  + RL DR    ++ GPTHEE+ T + + 
Sbjct: 61  MEAIGAQEVRFPALLPREPYEASNRWTEYGPNLFRLTDRKGADLLLGPTHEELFTLLVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G + SY     +
Sbjct: 121 LYGSYKDLPLSIYQIQTKYRDEARPRAGILRGREFIMKDSYSFDVDDAGLEASYQAHRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLG + + + A+SG +GG  S EF+ ++DTGE     S       + +  T   
Sbjct: 181 YVRIFDRLGFEYVVVHADSGAMGGSASEEFLAVSDTGEDTFVRSPGGYAANVEAVTTVAP 240

Query: 241 DIISLNSIVEQWTAPYA 257
           D +  + +         
Sbjct: 241 DPVPFDGLPAAHAEQTP 257



 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 4/171 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAAV+ESSHD  GI+
Sbjct: 421 RGIEMGHIFQLGRKYAEVLDLKVLDENGKLVTVTMGSYGVGVSRAVAAVVESSHDDLGIV 480

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM--GEQIGSQFAVADL 397
           WP ++AP+ + LI     D+       ++Y  L   G DV +DD      +G +F  A+L
Sbjct: 481 WPRALAPYDVHLIA-AGKDEAVHLGAARLYDELRAAGLDVLFDDRPGKISLGVKFKDAEL 539

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           LG P  V+VG K  +D  VE+K R TG R D+ +++++   S      RP+
Sbjct: 540 LGMPTIVVVG-KGFADGVVEVKDRATGDRSDVPVDDLVELLSASVREGRPL 589


>gi|189055088|dbj|BAG38072.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 294 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 353

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 354 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 412

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 413 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 471

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 472 RAVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 525

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 526 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 564

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 565 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 618

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 619 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFTLVVGEKEKISGTVNIRT 678

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 679 RDNKVHGERTISETIERLQQL 699


>gi|170077251|ref|YP_001733889.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|169884920|gb|ACA98633.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 604

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 165/457 (36%), Gaps = 52/457 (11%)

Query: 3   RSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +    +E   RD      +L L      Q   G+  W P G      +   ++ EQ
Sbjct: 183 QLKEYQRRKEEALKRDHRKLGRELGLFM-FSDQVGPGLPLWTPKGTLIRSTLENFLKAEQ 241

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMT 115
            + G   +  P +   DL+  SG + +Y ++M  +    D         +  P +     
Sbjct: 242 TKRGYQGVVTPHIARVDLFKVSGHWQNYREDMFPMMADGDAERAAEQGFVMKPMNCPFHI 301

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSY 174
            I++  ++SYR LP    +    +R E     G + R R F + D++ F +TP+  +  +
Sbjct: 302 QIYKDQLRSYRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPDQLEAEF 360

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFP 231
             +    L +F  L LK+   R        D    S E    A     +     D   F 
Sbjct: 361 FNVVDLILTVFKSLQLKNFKARLSFRDPNSDKYIGSDEVWEKAQNAIRKAVTKLDMDYFE 420

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
              E   +   +                               + V  R  ++G +    
Sbjct: 421 AEGEAAFYGPKLDF---------------------------IFQDVLEREWQLGTV---Q 450

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             Y+LP      +    G +   + +     G++  +  ++   + G   +W   +AP +
Sbjct: 451 VDYNLPERFELEYVTEHGDRQRPIMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPEQ 507

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + ++ +        D  ++  A+L  +G     D  GE++G     A+    P+  I G+
Sbjct: 508 VRILPV---SDEFYDYAKEQAAKLQAMGIRAVADASGERLGKLIRNAEKQKIPVMAIAGA 564

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           K V  + + I+ R +G    + +EEVI+      +N+
Sbjct: 565 KEVEANSLSIRTRASGELGAIPMEEVISRLIEANTNH 601


>gi|302346317|ref|YP_003814615.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302150675|gb|ADK96936.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 649

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 161/458 (35%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLEMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRRL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +I+
Sbjct: 287 LRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEIY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 AHKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKAEFENN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F   G  +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFKTFGFDNYEAQISLR--------------DPEDKEKYIGSDEVWEESEAAIK 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +      LN                  E    +    K        +G  +  GT    Y
Sbjct: 452 EACAEKGLN---------------ARVELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPNRFKLEYTAEDNSKKTPVMVHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   K+ A           DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYARKVKAYFDAHDVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++  V ++ +  G +  M++E      ++  +     L
Sbjct: 611 AEGLVSMRQQGGGEQATMTMEAFAERINNEVAEQLKGL 648


>gi|149183492|ref|ZP_01861921.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148848804|gb|EDL63025.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 569

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+ +LR G I Q+S GIYS+LPLG+K L  V  IIREE
Sbjct: 1   MKQSMTLIPTLRETPADAEVKSHQQLLRAGFIRQNSSGIYSFLPLGRKVLQKVEEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +E+ +P LQ A+LW ESGR+ +YG E++RL DR+ ++   G THEEV+T + R 
Sbjct: 61  MINAGGVELLMPALQQAELWQESGRWGTYGPELMRLEDRHKRSFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y K+F +
Sbjct: 121 EIKSYKKLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHSSYESLDDTYEKIFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F R GL    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNVFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSDTSQYAA 231



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 1/165 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGH+F  GT+YS  M A +   +G+   + MG YGIG  R +AAV E   D  G+ 
Sbjct: 404 KGIEVGHVFKLGTRYSDAMGAQYLDENGRAQSMIMGCYGIGVSRTLAAVAEQYCDENGLQ 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+ PF + ++ I   +   R+  E++Y+ L +   DV  DD  E+ G +F  +DL+G
Sbjct: 464 WPSSLTPFDVHIVPINIKNDEQRELAEQLYSELKEQRFDVLLDDRQERPGVKFTDSDLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            P +V VG K  +D  VE+K R TG   ++  +E+       F N
Sbjct: 524 LPFRVTVGKK-AADGVVEVKIRKTGDVIEVHKDELTAKLQELFRN 567


>gi|75908528|ref|YP_322824.1| prolyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|114152169|sp|Q3MAQ7|SYP_ANAVT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|75702253|gb|ABA21929.1| Prolyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 604

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 113/234 (48%), Positives = 150/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEDSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y  +  R GL   P+ A+SG IGG  S EF+VLA+ GE +V  + D     
Sbjct: 181 YQAYSNMLRRAGLAFRPVEADSGAIGGSGSTEFMVLAEAGEDEVLYTDDGKYAA 234



 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 1/168 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIEVGHIF  GTKYS  + AT+    G++  + MG YG+G  R+  + +E S+D 
Sbjct: 431 LKSARGIEVGHIFQLGTKYSQALGATYTNEQGEEKPLVMGCYGVGVSRLAQSAVEQSYDK 490

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP+   +     +D    +  E++Y  L++ G +   DD  E+ G +F  A
Sbjct: 491 DGIIWPVAIAPYHAIVTIPNINDAQQVEIAERLYTELNQSGVETLLDDRNERAGVKFKDA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P +++ G + +++ KVEI  R T   +++ ++EVI        
Sbjct: 551 DLIGIPYRIVTG-RAITNGKVEIVERATRQSQEIPIDEVITTLQQWIK 597


>gi|91223451|ref|ZP_01258716.1| prolyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|269966231|ref|ZP_06180320.1| prolyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|91191537|gb|EAS77801.1| prolyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|269829146|gb|EEZ83391.1| prolyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 571

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 150/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL   P+ A+SG IGG  S EF VLA++GE  +  S +     
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGSGSQEFHVLAESGEDIIAFSSESDYAA 231



 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K +    RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGKGIIQLKRGIEVGHIFQLGNAYSAAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGITRVVAAAIEQNHDKYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +  +++ +++ +   +  
Sbjct: 546 YKNRATGEKTAVAMTDIVEHVKAQLK 571


>gi|167042805|gb|ABZ07523.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_ANIW137I15]
          Length = 627

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 162/449 (36%), Gaps = 37/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             ++   + +   RD  +   +L L   +IH Q   G+  WLP G      +     +E 
Sbjct: 213 LDEHLAHLEEARRRDHRVLGKELGLF--LIHEQAGSGLVYWLPHGAVLRKVIERFWEDEH 270

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G   + +P L  + L+  SG YD Y + M  L + + +  +  P +      I+++ 
Sbjct: 271 VRRGYELVVIPHLVHSRLFRTSGHYDFYKENMFTL-EVDGEEYVAKPMNCPGHILIYQNE 329

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP  + ++   +R+E      G++R R F   DA+ F  TPE        +   
Sbjct: 330 RRSYRDLPIRYAEMGTVYRNERSGVLHGMLRVRGFTQDDAHIF-CTPEQLPGEILGVLDM 388

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +    G +   +                   D    + +   D       +      
Sbjct: 389 TLFMLATFGFERFEIELSVR--------------DPAHPEKYAGSDDEWKAAEASLVQAL 434

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  S      +            + K+ D+L    + S    +    F    ++      
Sbjct: 435 DERS--LPYRRCEGEAVFYGPKIDVKIVDALGRGWQASTIQFD----FNLPRRF----DL 484

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG  H    +    +G++      +     G   +W   ++P ++ ++ I    +
Sbjct: 485 KYVGADGDFHTPYMVHRALLGSLERFVGALIEHTAGAFPLW---LSPVQVKVLPIT---E 538

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++ A L + G  V  DD  E++G +     L   P  +++G +     +V ++
Sbjct: 539 RNHDHARRVAASLKESGLRVDVDDRNEKLGYKIRQGRLERTPYLLVIGDREQESQQVAVR 598

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R  G    M L+  ++      +   P 
Sbjct: 599 DRTEGNLGAMGLDAFLDRVQPEMAPRTPA 627


>gi|315645695|ref|ZP_07898819.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315279173|gb|EFU42483.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 576

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 119/232 (51%), Positives = 153/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  +  IIR+E
Sbjct: 1   MRQSQLLMTTMRDMPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIEGIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDAAGAQEMLMPAVQPAELWKESGRYDVYGPELIRLHDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD   EG   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWEGLDVSYRSMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE  V   +D     
Sbjct: 181 YERIFERCGLTFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCRDCRYAA 232



 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 4/189 (2%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D  N K  +  P         RGIE+GH+F  GTKYS  M+  +  +DG++  + MG YG
Sbjct: 388 DFRNVKEGEPCPRCGAPLQFHRGIELGHVFKLGTKYSEVMNGMYLDSDGREKPLIMGCYG 447

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  RV+AA+ E    G+ ++WP SVAPF++ +I +   D+   +  E IY  L K G +
Sbjct: 448 IGVSRVMAAIAEQRISGERLVWPMSVAPFQVHVIPVAVKDEAQMNLAEHIYKELIKAGLE 507

Query: 379 VFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              DD  E+ G +F  A+   G P ++I+G +  +  +VE      G++ ++     I  
Sbjct: 508 PLLDDRDERAGVKFKDAESRHGAPQRLIIG-RGAASGEVEWDRVEDGVKVNLPAAAAIQR 566

Query: 438 ASHRFSNNR 446
           A    +  R
Sbjct: 567 ACEAAARVR 575


>gi|89053589|ref|YP_509040.1| threonyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|88863138|gb|ABD54015.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Jannaschia sp.
           CCS1]
          Length = 648

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 147/436 (33%), Gaps = 49/436 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +L  L+E    AE   H+ + R      + + + G   W P G      +   +R +Q
Sbjct: 234 RKYLNFLEE----AEKRDHRRLGREMDLYHMQEEAPGQVFWHPNGWTIYTTLQDYMRRKQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-----IYGPTHEEVMTD 116
              G +E++ P +    LW +SG +D Y + M  +    + A         P +     +
Sbjct: 290 RADGYVEVNTPQVVDRALWEKSGHWDKYQEHMFIVEVDEEHAQTKAINALKPMNCPCHVE 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    
Sbjct: 350 VFNQGLKSYRDLPLRMAEFGSCSRYEPSGALHGIMRVRGFTQDDAHIF-CTEDQIEAECA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       ++  LG +S  +   + P     + E     +        S          +
Sbjct: 409 KFITFLSGVYKDLGFESFDIAFATRPEKRVGTDEAWDHVEGALEAAIKSVGNPYRIEEGD 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                         D++    +     ++       G    
Sbjct: 469 GAFYGPKLDFYLT--------------------DAIGRVWQCGTFQVDPNLPERLG---- 504

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               A++ G DG  H    +    +G+      ++  + +G+   W   +AP ++ + +I
Sbjct: 505 ----ASYVGQDGDKHRPYMLHRACLGSFERFIGILIENSEGRLPFW---LAPRQVVVASI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +      +   ++ A L   G     D   E+I  +     +   P  + +G + V + 
Sbjct: 558 VSD---ADEFVHEVVAALKATGIRAEADTRNEKINYKVREHSVGKVPAILAIGKQEVENR 614

Query: 415 KVEIKHRLTGIREDMS 430
            V ++         + 
Sbjct: 615 TVTLRRLGEKQTRVVP 630


>gi|298528346|ref|ZP_07015750.1| prolyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511998|gb|EFI35900.1| prolyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 577

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 122/231 (52%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P +AE+ SHKLMLR GMI + + GIY++LP G +AL  ++ +IR E
Sbjct: 1   MRWSRYFMPTLKEEPAEAEVVSHKLMLRAGMIRKLTAGIYTYLPAGWRALQKISEVIRGE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  AIE+ +P +Q  DLW E+GR+++YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRFYAIELLMPAVQPGDLWKETGRWEAYGKELLRFRDRHDRDYCIGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M  +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDEAGAAQSYEWMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF +LGL+   + A+SG IGG +S EF+VLADTGE  +          
Sbjct: 181 YVSIFEKLGLQFRGVEADSGAIGGSVSQEFMVLADTGEDVIATCTHCDFAA 231



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 2/193 (1%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+ +    D  P  +      +GIEVGHIF  G KYS  M+A +    G +  + MG 
Sbjct: 380 YHDLRSITREDPCPRCQGGIRMTKGIEVGHIFMLGAKYSQSMNAAYLDEHGAEKPLIMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  RV+AA IE +HD  GII+  ++APF++++I +   D++ R+  E +Y  L    
Sbjct: 440 YGIGVGRVLAACIEQNHDENGIIFTPAIAPFEVTIIALNPKDEMVRNHSESLYNELCSQN 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G +F   DL+G PLQVIVG+K + +  +E+K R +G R ++ LE+   
Sbjct: 500 VDVLLDDRDERPGFKFKDCDLVGSPLQVIVGAKGIKNGVLEVKERHSGHRHELPLEDFGR 559

Query: 437 YASHRFSNNRPVL 449
           +        R   
Sbjct: 560 HFQEVRRKVREHF 572


>gi|66806197|ref|XP_636821.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74852684|sp|Q54J66|SYTC1_DICDI RecName: Full=Probable threonyl-tRNA synthetase 1, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|60465220|gb|EAL63315.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 710

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 165/440 (37%), Gaps = 38/440 (8%)

Query: 11  LQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            +   R+A +  H+ + +       H +S G   +LP G +  + +   IREE +R G  
Sbjct: 305 YENFMREAALRDHRNVGKAQELFFFHPYSPGSAFFLPHGTRIYNKLVEFIREEYHRRGFT 364

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P++ S  LW +SG +  Y + M  L    D      P +      +F S  +SYR 
Sbjct: 365 EVISPSIFSQKLWEQSGHWQKYSENMFVLPVDKDN-FSLKPMNCPGHCLMFGSRQRSYRE 423

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  F    +  R+EL     G+ R R+F   DA+ F  T E  +   N        ++ 
Sbjct: 424 LPLRFADFGVLHRNELAGALTGLTRVRKFQQDDAHIFCTT-EMIEDEINSCLGFMQYVYG 482

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G                   EF +   T            D    S     +      
Sbjct: 483 IFGF------------------EFGLELSTRPDNFLGEIAQWDIAEASLEKALNKFGKPW 524

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            +  +  A Y    D+H     D L  + + +   ++    F    ++ L   +    A+
Sbjct: 525 KLNPKDGAFYGPKIDIHIT---DCLKRSHQCATIQLD----FQLPIRFDLEYQSD-DAAE 576

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   V +    +G++  + A++     GK   WP  V+P +  ++ +        +  +
Sbjct: 577 LKKRPVIIHRAILGSVERMMAILIEHTGGK---WPLWVSPRQAIVVTVNK---THNEYGQ 630

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   +S  G     DD  + I  +   A L  +   ++VG + ++ + V ++ R   +R
Sbjct: 631 KVCKEISDAGFYCDIDDSDKTISKKVREAQLAQYNYILVVGQEEINGNTVNVRTRDNVVR 690

Query: 427 EDMSLEEVINYASHRFSNNR 446
             +++ ++I+         +
Sbjct: 691 GSLTVNDLISEFKQLVKEFK 710


>gi|291287861|ref|YP_003504677.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885021|gb|ADD68721.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 637

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 166/445 (37%), Gaps = 47/445 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +   G   +LP G    + +    ++E  + G
Sbjct: 228 YLNMLEEAEKRDHRKIGKQLKLFT-FSEEAGAGFPIYLPNGGALRNVLETYEKQEHIKRG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P++   DLW +SG YD+Y + M      +D      P +      +F S I+SY
Sbjct: 287 YDIVYGPSILKQDLWKKSGHYDNYRENMY-FTKIDDVDYGVKPMNCLAHMMVFNSDIRSY 345

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+ F  TPE        +      +
Sbjct: 346 RDLPQRYFELGTVHRHEKSGVLHGLLRVRAFTQDDAHLF-CTPEQLNDEIIGIIDFVDEV 404

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             + G +   +   + P   IG D + E                        + N  F+ 
Sbjct: 405 MGKFGFEY-EIEVSTKPEKYIGSDDNWE-----------------------KATNALFEA 440

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + +     E      A      + KL D++    + +    +    F    K+       
Sbjct: 441 LKTKGLEYEINEGDGAFYGPKIDIKLKDAIGRYWQCATIQAD----FNLPEKF----DLN 492

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H  V +    +G++     V+     G   +W   VAP ++ +INI      
Sbjct: 493 YIGEDGQKHRPVMLHRVILGSVDRFIGVLTEHFAGAFPVW---VAPKQVRVINITDG--- 546

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D C+ +  +L   G  V  D   E++G +   A +   P  +I+G   V    V ++ 
Sbjct: 547 QLDYCKALVQKLKAEGFRVDSDLRNEKVGFKIREAQMEKIPHMLIIGQNEVDKELVSVRL 606

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R    + ++     +   +    N 
Sbjct: 607 RNGENKNELDFSTYLGVLTELDKNK 631


>gi|256827500|ref|YP_003151459.1| prolyl-tRNA synthetase, family II [Cryptobacterium curtum DSM
           15641]
 gi|256583643|gb|ACU94777.1| prolyl-tRNA synthetase, family II [Cryptobacterium curtum DSM
           15641]
          Length = 588

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 157/227 (69%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  ++P L+E P DA+IASH+L+LR GM+ + + G Y++LPLG + +  +  I+REE 
Sbjct: 6   RMSALYVPTLKEVPTDADIASHQLLLRAGMMRKSATGAYTYLPLGWRVIRKIERIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G+ E+ +P +Q A+LW ESGR++ YG E++R+ DR+   +  GPTHEE++T + R+ 
Sbjct: 66  DAIGSQEIMMPVIQPAELWHESGRWNDYGPELMRMDDRHGHGLCLGPTHEELITALVRNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E  + +Y++M  +Y
Sbjct: 126 LRSYKQLPVILYQIQSKFRDEIRPRFGLMRSREFIMKDAYSFHASKESLQKTYDEMSAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            RI  R+GL   P+ A++G IGG ++ E+  LAD GE ++       
Sbjct: 186 ARICERVGLVYRPVEADAGQIGGSVTCEYHALADAGEAELASCSCGW 232



 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 2/178 (1%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+   K  D  PE        RGIEVG +F  G KYS  M ATF   DG +    MG 
Sbjct: 380 WADLCTIKAGDVCPECGELVEITRGIEVGQVFQLGDKYSRAMGATFMAEDGSEQPFLMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YG+G  R +AAV+E  +D  GI WP SVAP ++ ++ +   D+    A E +   L+ +G
Sbjct: 440 YGVGVSRTMAAVVEQHNDEYGIKWPLSVAPAQVCILPLAVGDEEVEPAAEALAHELAGMG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +V  DD  E+ G +FA ADLLG+PLQ+I+G + +   + E+K+R TG +  ++++E 
Sbjct: 500 LEVVIDDRKERPGVKFAEADLLGWPLQIIIGKRGLDAGEYELKNRSTGAKRTIAIDEF 557


>gi|218295928|ref|ZP_03496708.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218243666|gb|EED10194.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 660

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 162/451 (35%), Gaps = 45/451 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L   +I     KG+  WLP G    + + A +REEQ +
Sbjct: 240 EYLWQLEEAKKRDHRRLGRELELF--LIDPMVGKGLVLWLPKGNVIREELIAFMREEQIK 297

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR---LADR-NDKAMIYGPTHEEVMTDIFR 119
            G   ++ P + S +L+  SG Y  Y +         +R  ++  +  P +      I+ 
Sbjct: 298 RGYQLVTTPHIGSLELYKTSGHYPYYAESQFPPISFKERGEEEEYLLKPMNCPHHIRIYA 357

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SYR LP    +    +R E      G+ R R F   DA+ F   PE  K  +  + 
Sbjct: 358 HKKRSYRELPLRLAEFGTVYRYEKAGELLGLTRVRGFTQDDAHIFCA-PEDVKGEFLGVL 416

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L++F  LGLK    R  +     D            E Q+  +          E  D
Sbjct: 417 DLVLKVFATLGLKDFRARIGTRDPKSDKYVGDEARWSLAERQIEEAALEAGLHYTVEEGD 476

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
                             A      +  + D+L        R  ++G I      Y+LP 
Sbjct: 477 A-----------------AFYGPKLDFVVKDALG-------REWQLGTI---QVDYNLPE 509

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG++H  V +     G++     ++     G   +W           + + 
Sbjct: 510 RFGLTYVGKDGEEHRPVVLHRAPFGSLERFIGILIEHFAGDFPLWLSP------VQVVVV 563

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   D   ++  RL + G     D   E++ ++   A+L   P  ++VG K  ++  
Sbjct: 564 PVSEKQEDYALEVTHRLKEAGLRAEADTRPERMQARIRDAELKKVPYVLVVGEKEKAEGA 623

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V ++ R  G    M L   +  A   +   R
Sbjct: 624 VSVRRRHRGNLGVMPLFTFVEGALREYRERR 654


>gi|17227831|ref|NP_484379.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17129680|dbj|BAB72293.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 615

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 166/445 (37%), Gaps = 45/445 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   +++EQ + G + + 
Sbjct: 203 EEALRRDHRKLGKELGLFI-FSEQVGPGLPLWTPKGTLLRSTLEQFLQQEQLKRGYLPVV 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND------KAMIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   ++      +  +  P +      I++S ++S
Sbjct: 262 TPHIARVDLFKTSGHWQKYKEDMFPLMAEDEAAAAIEQGFVLKPMNCPFHIQIYKSELRS 321

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F +TPE   + +  +    L 
Sbjct: 322 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDNEFLNVVDLILS 380

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  L LK+   R        D       + +  E  +  +                 + 
Sbjct: 381 VFKSLQLKNFKARLSFRDPASDKYIGSDEVWNKAEGAIRRA-----------------VE 423

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
            L     +     A      +    D+         R  ++G +      Y+LP      
Sbjct: 424 QLGMEHFEGIGEAAFYGPKLDFIFSDA-------LEREWQLGTV---QVDYNLPERFDLE 473

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V +     G++  +  ++   + G   +W   +AP +  L+ +    + 
Sbjct: 474 YVAEDGTRKRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPVQARLLPVG---EA 527

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + + A+L  +G     D  G+++G     A+    P+  +VG+K V  + + I+ 
Sbjct: 528 QLDFTKDVVAKLRSLGIRAEVDTSGDRLGKLIRNAEKDKIPVMAVVGAKEVETNSLSIRT 587

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G    + ++EV+       +N 
Sbjct: 588 RASGELGAIPVDEVVQKMKDAIANY 612


>gi|323705637|ref|ZP_08117211.1| prolyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535114|gb|EGB24891.1| prolyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 570

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 113/234 (48%), Positives = 157/234 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P ++E P +AEI SH LML+  M+ + + G+Y +LPLG++ L  +  I+REE
Sbjct: 1   MRLSQLFIPTMREVPAEAEIPSHILMLKAAMMRKLASGVYIYLPLGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  +  A+L  ESGR+D +G EM +L DRND+    GPTHEEV TD+ R+
Sbjct: 61  MDRAGAQEVLMSAIIPAELLKESGRWDVFGPEMFKLKDRNDREFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD+  +G   S++KM+ +
Sbjct: 121 DVKSYRQLPLTIYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDVDWDGLDVSFDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF R GLK   + A++G +GG  S EF+V ++ GE  +    +        
Sbjct: 181 YCRIFDRCGLKYTVVEADTGAMGGKDSKEFMVTSNVGEAVIAYCDNCGYAANEE 234



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/185 (39%), Positives = 101/185 (54%), Gaps = 3/185 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 D  P+        RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG
Sbjct: 386 RKVVDGDKCPKCGSPLKLDRGIEVGHIFKLGTKYSDALGANYIDENGNEKPIIMGCYGIG 445

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+ AA IE +HD KGIIWP S+AP+ + ++ +   + V RD  EK+Y  LSK G +V 
Sbjct: 446 LNRIAAAAIEQNHDDKGIIWPMSIAPYHVIIVPVNVSNDVQRDLAEKLYDELSKAGIEVL 505

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD   + G +F  ADLLG P+++ VG K   D+ VE+K R      ++  +EV+     
Sbjct: 506 IDDRDLRAGVKFNDADLLGIPIRITVGKK-AEDNIVELKLRREEKPIELKYDEVLGKVKE 564

Query: 441 RFSNN 445
             S N
Sbjct: 565 LISEN 569


>gi|288802831|ref|ZP_06408268.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288334648|gb|EFC73086.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 649

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 162/458 (35%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLEMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRRL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +I+
Sbjct: 287 LRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEIY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 AYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKAEFENN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F   G  +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFKTFGFDNYEAQISLR--------------DPEDKEKYIGSDEVWEESEAAIK 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +      LN                  E    +    K        +G  +  GT    Y
Sbjct: 452 EACAEKGLN---------------ARVELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPNRFKLEYTAEDNSKKTPVMVHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  +K+ A           DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYAQKVKAYFDAHDVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++  V ++ +  G +  M++E      ++  +     L
Sbjct: 611 AEGLVSMRQQGGGEQATMTMEAFAERINNEVAEQLKGL 648


>gi|323498007|ref|ZP_08103016.1| prolyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323317052|gb|EGA70054.1| prolyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 571

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 150/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQIEDLRNVVEGDPSPCGQGTIMLKRGIEVGHIFQLGKAYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R +G +  +++ +++ +   + 
Sbjct: 546 YKNRRSGEKTAVAMTDIVEHVKAQL 570


>gi|296084987|emb|CBI28402.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 150/449 (33%), Gaps = 35/449 (7%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G      +    ++  
Sbjct: 266 QLKAYLHFKEEAKRRDHRRLGQDLDLFS-IQDEAGGGLVFWHPKGAIVRRIIEDSWKKIH 324

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  
Sbjct: 325 IEHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRK 384

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 385 LHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 443

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  + G     +   + P     + +    A +        K +             
Sbjct: 444 TEEILLQFGFSKYEVNLSTRPEKAVGADDIWEKATSALRDALDDKGWSYRIDEGGG---- 499

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYFGTKYSLP-- 297
                           A      + K+ D+L    + S      +   F     ++LP  
Sbjct: 500 ----------------AFYGPKIDLKIEDALGRKWQCSTIQANRLDLSFTKEVDFNLPQR 543

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+  ++  K   + +    +G++     V+   + G   +W   ++P +  ++ +  
Sbjct: 544 FDITYVDSNSEKQRPIMIHRAVLGSLERFFGVLIEHYAGDFPLW---LSPIQARVLPVT- 599

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 + C ++  +L   G        GE++      ++    PL  +VG K V    V
Sbjct: 600 --DTQLEYCNEVTNKLKANGIRAEV-CHGERLPKLIRNSEKQRIPLMAVVGPKEVETQTV 656

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    M +E+ I+       N 
Sbjct: 657 TVRSRFGGELGTMIVEDFISRTKSATENR 685


>gi|319788022|ref|YP_004147497.1| prolyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466534|gb|ADV28266.1| prolyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 565

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 134/438 (30%), Positives = 198/438 (45%), Gaps = 53/438 (12%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SHKLMLR GMI + + G+Y+W PLG + L  V A++REE
Sbjct: 1   MRLSRFHLHTTKETPADAELVSHKLMLRAGMIRKLAAGLYTWTPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +PT+Q  +LW E+GR+  +G ++L++ DR +    + PT EE +TD  R 
Sbjct: 61  MNRAGAVELQLPTIQPRELWEETGRWGKFGGQLLKIKDRKEAEYCFSPTAEEAITDFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQI  KFRDE+RPRFGVMR+REFLMKDAYSF ++ E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQIHTKFRDEIRPRFGVMRAREFLMKDAYSFHVSDEDLAREYENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R+F RLGL+   ++A+SG IGGD S EF VLAD+GE  +  S                
Sbjct: 181 YIRVFGRLGLEFRAVQADSGAIGGDASQEFHVLADSGEDALAFSTASDYAANVETAQAAA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF----GTKYSL 296
                 +  E             +      +P  + V +  +     F      G     
Sbjct: 241 PGPRPAATEEMRKVETPVQKTCEDVAALLGIPLQRTVKSVAVFGEQGFVLALVRGDHSVN 300

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            +        G+                 A ++E      G + P  V+P K   +    
Sbjct: 301 EIKLAKVDGIGEYRPATE-----------AEILEHLGSEPGFLGP--VSPKKAIRLV--- 344

Query: 357 HDQVCRDACEKIYARLSKVGC--------------DVFWDDMGEQIGSQFAVADLLGFPL 402
            D+      + +    ++ G               DV  D                    
Sbjct: 345 ADREVAAMADFVVGA-NEAGFHLAGVNWGRDLAEADVVADIRN----------------- 386

Query: 403 QVIVGSKFVSDSKVEIKH 420
            V+ G +     ++ +  
Sbjct: 387 -VVAGDRAADGGEIRLAR 403



 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 83/162 (51%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G KYS  M  T    +GK     MG YGIG  R+VAA IE +HD  GI+
Sbjct: 403 RGIEVGHVFQLGRKYSQAMGFTVLDENGKAVVPAMGCYGIGVSRIVAAAIEQNHDEAGIV 462

Query: 340 WPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+ +++  I    D    +A E +   L   G D   DD G + G  FA  +L+
Sbjct: 463 WPVPMAPWTVAVCVINPKKDAQVDEAAESLLVELQAAGIDAVLDDRGLRPGPMFADMELI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V ++ +     E + R  G  E +   +++     
Sbjct: 523 GIPHRVVVSARGLEAGTYEYRARSGGEAEALDRAQLLERLRQ 564


>gi|67475342|ref|XP_653365.1| threonyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56470308|gb|EAL47979.1| threonyl-tRNA synthetase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 676

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 163/448 (36%), Gaps = 39/448 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +K  L    +   +A+   H+L+ R       H  S G   WLP G +  + +  ++R E
Sbjct: 263 TKDLLKEYIKRAEEADKRDHRLIGRQQDLFFFHVLSPGSCFWLPHGTRIYNKLVELMRSE 322

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +  + LW  SG +  Y  +M    +   +     P +      +F S
Sbjct: 323 YRVLGYQEVITPNIFLSTLWETSGHWQHYKDDMFSF-ECEKQTFALKPMNCPGHCVMFAS 381

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP  + +  +  R+EL     G+ R R F+  D++ F  T +  +     +  
Sbjct: 382 KKRSYRELPLRYAEFGVLHRNELTGALHGLTRVRRFVQDDSHIF-CTMDQIESEVTGVLN 440

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              +I+   G K+  +   +      +   E    A+   TQV             +   
Sbjct: 441 LMKKIYKIFGFKT-EIALSTRNEKKFMGEIETWNKAEAMLTQVLNDSHLPFVINAGDG-- 497

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ D+L    +V+   ++    F    ++ L  
Sbjct: 498 ------------------AFYGPKIDIRIEDALGRKHQVATVQLD----FQLPLRFKLDY 535

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +       K   V +    +G++    A++     GK   WP  ++P ++ +  +    
Sbjct: 536 MSEDPNQPLK-TPVMVHRAVLGSIERFTAILTEHLAGK---WPFWLSPRQVMVCTV---S 588

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +   K+   L+  G     DD   ++  +   A +  +   +++G + +  + V +
Sbjct: 589 EKYNEYGAKVTKELNDAGFYADLDDSDNKLPKKIRNAQVAQYNFILVIGEEELVSNSVNV 648

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R   +   +  +E I +     ++ +
Sbjct: 649 RTRENKVEGKVEFKEFIKHLKQLEADKQ 676


>gi|291521022|emb|CBK79315.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Coprococcus
           catus GD/7]
          Length = 585

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 159/443 (35%), Gaps = 36/443 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L +L+E   RD         +   M+     +G+  +LP G      +   I+E++ + G
Sbjct: 172 LQLLEEAKERDHRKIGK--DMELFMVDDLVGRGLPMFLPKGYTIWQELENYIKEKERKLG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y + M    + +D+A +  P +      I+ +   SY
Sbjct: 230 YQHVMTPCVGTVNLYKTSGHWDHYKENMFPAMEVDDEAFVLRPMNCPHHMMIYANKRHSY 289

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +I   FR E      G+ R R F   DA+ F +TPE  K   +++       
Sbjct: 290 RDLPIRIGEIAHDFRYEASGTLKGIERGRHFCQNDAHLF-VTPEQIKDEISRVVDLIFST 348

Query: 185 FHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +   G+     + +   P      H+   + +  E  +          +     ++ + I
Sbjct: 349 YEDFGITDYRCVLSLRDPEDKAKYHDDDEMWNKAENAL-------REVMNELGLEYTEEI 401

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  +  ++     +S   ++    F    K+ L    T+ 
Sbjct: 402 GEA----------AFYGPKLDVNVKPAVGNEITLSTCQLD----FCLPAKFQL----TYV 443

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG+    V +    +G++    A I     G    W   +AP ++ ++ +K  D    
Sbjct: 444 DKDGEMKTPVVLHRAILGSLDRFMAYILEETKGNLPTW---LAPIQVKVMPVKTDDDDLN 500

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   L      V  DD  E++G +     +   P  +++G     +  V  +   
Sbjct: 501 AYANEICELLEAQNVRVDLDDRAEKLGYRMREGQIQKVPYLLVIGFNEKDNRTVSYRLHG 560

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E +        N 
Sbjct: 561 EKDTTVVGLDEFVEKIVDEIKNK 583


>gi|239817181|ref|YP_002946091.1| prolyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|259511631|sp|C5CXW9|SYP_VARPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239803758|gb|ACS20825.1| prolyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 581

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ASH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASRFFVSTLKEAPADAEVASHRLMMRAGMIKKLGTGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAEFWQETGRFDKMGPELLRIKDRHDRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDLDAAKASYQAMADA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D         +        +D+ N    D+ P+ K      RGIEVGH+F  GTKYS  M
Sbjct: 375 DFHMTGVNWGRDLPEPELVADLRNVVAGDASPDGKGVLAIERGIEVGHVFVLGTKYSKDM 434

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT+    GK  +++MG YGIG  R+ AA IE +HD +GIIWPD++APF + +  I    
Sbjct: 435 NATYLDEAGKPQFLEMGCYGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVVCPIGMDR 494

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               + A E +Y +L   G DV  DD GE+ G+ FA  +L+G P +V++  + + + ++E
Sbjct: 495 SPEVKVAAEALYEQLLAAGVDVLLDDRGERPGAMFADWELIGVPHRVVISDRGLKEGQLE 554

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            +HR       +    +  + + +F+ 
Sbjct: 555 YQHRRDTAATKVPAAGIAEFIAGKFAQ 581


>gi|88809590|ref|ZP_01125097.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786340|gb|EAR17500.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 611

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 154/441 (34%), Gaps = 38/441 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M      +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMQVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L PE       K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILKILDLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P           LA  G  +    K +                      
Sbjct: 381 FNTYEINLSTRPEKSIGDDAVWDLATKGLIEALERKGWAYKIDEGGG------------- 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
                  A      + K+ D++    + S   ++    F    ++       +  ADG K
Sbjct: 428 -------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERF----KLDYIAADGSK 472

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++     ++  ++ G    W   +AP ++ L+ +       +   E++
Sbjct: 473 QRPIMIHRAIFGSLERFFGIMTENYAGDYPFW---LAPEQVRLLPVT---DEVQPYAERL 526

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L++VG     D  G+++G      + +  P+  ++G+K    + V ++ R  G    
Sbjct: 527 LDQLTQVGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGV 586

Query: 429 MSLEEVINYASHRFSNNRPVL 449
           +++ +++    +  +     L
Sbjct: 587 VTMADLLRAVQNANAQRAAGL 607


>gi|194384006|dbj|BAG59361.1| unnamed protein product [Homo sapiens]
          Length = 602

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 185 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 244

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 245 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 303

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 304 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 362

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 363 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 416

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 417 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 455

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 456 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 509

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 510 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 569

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 570 RDNKVHGERTISETIERLQQL 590


>gi|67922129|ref|ZP_00515644.1| Prolyl-tRNA synthetase, bacterial [Crocosphaera watsonii WH 8501]
 gi|67856029|gb|EAM51273.1| Prolyl-tRNA synthetase, bacterial [Crocosphaera watsonii WH 8501]
          Length = 602

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 111/234 (47%), Positives = 149/234 (63%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+++Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNAAGAQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQERELGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY  M
Sbjct: 121 AKDMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNEDEASLQKSYEAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D     
Sbjct: 181 DRAYRNIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTEDGKYAA 234



 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 118/257 (45%), Gaps = 5/257 (1%)

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L  I    E   I    S E   L    +T V    D  +F   +  T++  I +     
Sbjct: 349 LGYISPSLEDDYIASGESIEGQFLRIVDQTAV----DLENFVTGANETNYHVIGANWGQE 404

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q     +              P     SARGIEVGHIF  GTKYS  M ATF   +G +
Sbjct: 405 FQLPKLVSDIRTAMVGDRSVHDPSQILASARGIEVGHIFQLGTKYSQAMGATFTDENGAE 464

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + MG YG+G  R+  A +E S+D  GIIWP ++ P+   +I     D+   +  + +Y
Sbjct: 465 KPIVMGCYGVGVSRLAQASVEQSYDKDGIIWPVAITPYHAIIIVPNIKDKNQMEVAQNLY 524

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L+K+G +   DD  E+ G +F  ADL+G P +V+ G + +   KVE+  R T   +++
Sbjct: 525 NQLNKIGVETLLDDRDERAGVKFKDADLIGIPYRVVTG-RSLKAGKVEVVTRQTKESQEI 583

Query: 430 SLEEVINYASHRFSNNR 446
            +  ++    +   N +
Sbjct: 584 EVTNLVETLKNWLKNIK 600


>gi|241763800|ref|ZP_04761846.1| prolyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241366932|gb|EER61337.1| prolyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 580

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVVQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +          
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQSDYAA 231



 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 111/211 (52%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              +  D         +        +D+ N    D  P+ +      RGIEVGH+FY GT
Sbjct: 368 CGANEVDFHITGVNWGRDLPEPDMVADLRNVVAGDRSPDGRGELAIERGIEVGHVFYLGT 427

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF G DGK  + +MG YGIG  R+ AA IE +HD +GIIWPD++APF + + 
Sbjct: 428 KYSKGMNATFLGDDGKPAFFEMGCYGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVIC 487

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +        + A EK+YA L   G DV  DD GE+ G+ FA  +L+G P +V +G K +
Sbjct: 488 PVGMDRSDAVKAAAEKLYADLLAAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDKSL 547

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  VE +HR       +++ +++     R 
Sbjct: 548 KEGVVEYQHRRDAAATKVAVADILARVKGRM 578


>gi|284030961|ref|YP_003380892.1| prolyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810254|gb|ADB32093.1| prolyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 587

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 102/234 (43%), Positives = 145/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L NV  I+REE
Sbjct: 3   LRMSSLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGMYTWLPLGLRVLRNVEKIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  +GR+  YG  + RL DR    M+ GPTHEE+ T   + 
Sbjct: 63  MDAIGAQELVFPALLPREPYEATGRWTEYGPNLFRLKDRKGADMLLGPTHEEMFTLAVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR GV+R REF+MKD+YSFD+   G + SY+    +
Sbjct: 123 LYSSYKDLPLSIYQIQNKYRDEARPRAGVLRGREFVMKDSYSFDVDQAGLQASYDLHRKA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y+RIF RLG   + ++A SG +GG  S EF+ +A+ GE     S       + +
Sbjct: 183 YIRIFDRLGFDYVIVQAMSGAMGGSASEEFLAVAENGEDTFVRSPGGYAANVEA 236



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E +HD 
Sbjct: 420 LQSARGIEMGHIFQLGQKYAEALDLKVLDQNGKLVTVTMGSYGVGVTRAVAAIAEGNHDE 479

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
            G+IWP  + P  + L+      +V   A E +   L   G  V +DD  +   G +F  
Sbjct: 480 LGLIWPREITPADVHLVATGKETEVFAKAAE-LATELESRGLTVLYDDREKVSPGVKFKD 538

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A+LLG P   +VG K ++D  +E+K R +G R D+++ EV++       
Sbjct: 539 AELLGIPTIAVVG-KGLADGTIEVKDRRSGDRTDVAVTEVVDKLVEVVR 586


>gi|261253697|ref|ZP_05946270.1| prolyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937088|gb|EEX93077.1| prolyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 571

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKSGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGQGTLQLKRGIEVGHIFQLGNTYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +  +++ +++ +   + +
Sbjct: 546 YKNRRNGEKTAVAMADIVEHIKAQLA 571


>gi|258647088|ref|ZP_05734557.1| threonine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260853035|gb|EEX72904.1| threonine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 647

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 162/453 (35%), Gaps = 47/453 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQH-SKGIYSWLPLGQKALDNVNAII 57
           +    +L +L+E  R      H+ + R     M  +   KG+  WLP G      + + +
Sbjct: 227 KMLDEYLQLLEEAKR----RDHRKIGREMELFMFSELVGKGLPIWLPKGTVLRQQLMSFL 282

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMT 115
           R+ Q R G +E+  P + S +L+V SG Y  YGK+  +        +  +  P +     
Sbjct: 283 RKIQKRFGYMEVITPHIGSKNLYVTSGHYAKYGKDSFQAIHTPEEGEEYMLKPMNCPHHC 342

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            ++     SY++LP    +    +R E      G+ R R F   DA+ F   P+  K  +
Sbjct: 343 AVYSWQPHSYKDLPLRIAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CRPDQVKQEF 401

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            ++    + +F  L  +    +                       +   S D  D    +
Sbjct: 402 LRVMDIIMIVFRALNFEQFEAQISLRD-------------KVKREKYIGSDDVWDKAEQA 448

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                ++      I     A Y    D   +              R  ++G I      Y
Sbjct: 449 IIEACEEKGLQAKIEYGEAAFYGPKLDFMVKDALG----------RRWQLGTI---QVDY 495

Query: 295 SLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      + G D K H  V +     G++    AV+     G   +W   + P +  +
Sbjct: 496 NLPERFQLEYTGEDSKKHRPVMIHRAPFGSLERFTAVLIEHTGGHFPLW---LMPDQCVI 552

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   K+  +L   G     D+  E++G +    ++   P  ++VG K  
Sbjct: 553 LPI---SERFNDYAHKVKEQLEAAGIRANIDERNEKVGRKIRDNEMKHIPYLLVVGEKEQ 609

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +D  V ++ +  G +E M++           + 
Sbjct: 610 ADGSVNVRKQGEGTQETMTIPMFAEKVLKEVAE 642


>gi|169351009|ref|ZP_02867947.1| hypothetical protein CLOSPI_01786 [Clostridium spiroforme DSM 1552]
 gi|169292071|gb|EDS74204.1| hypothetical protein CLOSPI_01786 [Clostridium spiroforme DSM 1552]
          Length = 606

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 152/432 (35%), Gaps = 39/432 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD +    +L L   M+ +++ G+  +LP G    + +     EE  + G + +  P + 
Sbjct: 211 RDHKKIGKELGLF--MMSEYAPGMPIFLPKGMILRNTLEQFWYEEHTKEGYVFIKTPIMM 268

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           S +LW  SG + +Y  +M      +D+     P +      ++++ + SY++LP    ++
Sbjct: 269 SRELWETSGHWANYKDDMYTSMV-DDREFAIKPMNCPGSLLVYKNGLHSYKDLPLRMGEL 327

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R E      G+ R R F   DA+ F +TP+  +    K+     R+++ L L    
Sbjct: 328 GQVHRHEASGALNGLFRVRTFTQDDAHIF-MTPDQIESEIIKLINFIDRVYNSLNLSY-E 385

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P                E +        +    +             I     A
Sbjct: 386 IELSTRP----------------EEKYIGDLAIWEKSEAALAAACKAAGKDYKINPGDGA 429

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQ 313
            Y    D H +              R  + G I             T+    G K   V 
Sbjct: 430 FYGPKLDFHVKDSLG----------RVWQCGTI-QLDMNLPERFDITYIDDKGEKARPVM 478

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +     G++     ++     G   +W   +AP ++ ++ +   ++   +  +++   L 
Sbjct: 479 LHRVIFGSIERFIGILIEHFAGVFPLW---LAPVQVKVLPVN--NEYHLEYAKEVTKLLQ 533

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V  D   E++G +     +   P  +++G+    +  V  +      +  +  +E
Sbjct: 534 EAGLKVEMDAREEKLGYRIREGQMEKVPYLLVLGNNERDEKTVTYRQHGQQKQITVPFDE 593

Query: 434 VINYASHRFSNN 445
            ++       N 
Sbjct: 594 FVSMLKKEIENK 605


>gi|299823039|ref|ZP_07054925.1| proline--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816568|gb|EFI83806.1| proline--tRNA ligase [Listeria grayi DSM 20601]
          Length = 566

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 150/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE+ +H+L+LR G I Q + G+YS+LPL    L N+  IIREE
Sbjct: 1   MRQSMTFIPTLKEVPADAEVKNHQLLLRAGFIRQTASGVYSYLPLATLTLRNIERIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P LQ A+LW ESGR+  YG E++RL DRN++    GPTHEEV+T + R 
Sbjct: 61  LNKVGASEILMPALQPAELWEESGRWADYGPELMRLKDRNNRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHADLESLDKTYQDMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG IGG  + EF+ L+  GE  +  S       
Sbjct: 181 YSNIFTRCGLDFRAVIADSGSIGGKETKEFMALSAIGEDTIAYSDTSDYAA 231



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 1/163 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M A F   +G+ + + MG YGIG  RV++A+ E + D  G++W
Sbjct: 405 GIEVGHIFKLGTKYSDAMKANFLDENGRANPIIMGCYGIGVSRVLSAIAEQNADENGLVW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              ++PF + LI +   ++      E++Y  L + G  V +DD  E+ G +FA ADL+G 
Sbjct: 465 DREISPFDLHLIPVNMKNEEQASFAEELYVSLQESGFTVLFDDRAERAGVKFADADLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P+++ VG K   +  VE+K R TG   ++  EE++N     F 
Sbjct: 525 PIRITVGKK-ADEGIVEVKIRKTGEMIEVKKEELLNTLPILFR 566


>gi|20808685|ref|NP_623856.1| prolyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|81848077|sp|Q8R7S9|SYP_THETN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|20517322|gb|AAM25460.1| Prolyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 573

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 116/241 (48%), Positives = 157/241 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P DAEI SH LML+ G++ + + GIY +LPLG++ L  V  I+REE
Sbjct: 1   MRLSQLLMPTLREVPADAEIPSHVLMLKAGLMRKLAAGIYVYLPLGKRVLKKVEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L+ E+GR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDREGSQEVLMSALIPAELFKETGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD   EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDADWEGLDESFNKMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+ G +GG  S EF+V++  GE  +             +     
Sbjct: 181 YCRIFDRCGLKYLVVEADPGAMGGRDSKEFMVISSVGEAVIAYCDSCGYAANEEKAECLI 240

Query: 241 D 241
           +
Sbjct: 241 E 241



 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 1/155 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E             ARGIEVGHIF  GTKYS  + AT+   +G +  + MG YGIG  R 
Sbjct: 389 EGDRCPRCGAPLKIARGIEVGHIFKLGTKYSEALGATYTDEEGNEKPIVMGCYGIGINRT 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA+IE  HD KGIIWP SVAP+ + ++ +   D+  +   EKIY +L +   +V  DD 
Sbjct: 449 VAAIIEQHHDEKGIIWPMSVAPYHVIVVPVNVSDEEQKQIAEKIYNKLLEEKLEVLIDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             + G +F  ADL+G P++V +G K V +  VEIK
Sbjct: 509 DVRAGVKFNDADLIGIPVRVTIGKK-VKEGIVEIK 542


>gi|70725135|ref|YP_252049.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68445859|dbj|BAE03443.1| threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) [Staphylococcus
           haemolyticus JCSC1435]
          Length = 638

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 163/448 (36%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           RSK  L    E  R+AE  +H+ +   L+  M  + + G+  +L  GQ   + +   +RE
Sbjct: 224 RSKDQLDDYFEFLREAEERNHRRLGKQLKLFMFSEEAPGMPFYLSNGQFIRNQMENFLRE 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            Q +    E+  P + +  LW ESG +D Y + M      ++      P +      IF+
Sbjct: 284 VQLKHDYDEVRTPLMMNKRLWEESGHWDHYHENMY-FTKVDENDYALKPMNCPGHMLIFK 342

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + ++SY++LP    +     R E      G++R R F   DA+ F +     K    ++ 
Sbjct: 343 NELRSYKDLPLRIAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIFIMKS-QIKSEVQEIL 401

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I+   G +   +   + P                        D  +    S    
Sbjct: 402 KLIDYIYSVFGFEY-SIELSTRP-----------------DDYLGELDLWNEAEQSLAHV 443

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            DD+    SI E   A Y    DVH +   D+L  + + +   ++    F    K+    
Sbjct: 444 LDDLGLDYSINEGDGAFYGPKIDVHIK---DALNRSHQCATVQLD----FQMPEKF---- 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+      K+  V +     G++     ++     G   +W   +AP +++LI +  +
Sbjct: 493 ELTYINEQNEKERPVVLHRAVFGSLDRFFGILIEHFKGAFPLW---MAPVQVNLIGVSDN 549

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +         +   L      V  DD  E++G +   + L      +++G        V 
Sbjct: 550 NDG---YVRTVAEALRDENIRVAIDDREEKLGKKIRESQLNKISYTLVLGDDEQQHHTVS 606

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++       E M ++  I    H   + 
Sbjct: 607 VRKYAHDDNETMDIQAFIEKLKHEIESK 634


>gi|167036776|ref|YP_001664354.1| prolyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115198|ref|YP_004185357.1| prolyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|226701349|sp|B0KCH5|SYP_THEP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166855610|gb|ABY94018.1| prolyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928289|gb|ADV78974.1| prolyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 570

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 116/241 (48%), Positives = 158/241 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDMDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 D 241
           +
Sbjct: 241 N 241



 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 109/232 (46%), Gaps = 4/232 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            GE  +    +           +  D    N +           +D+ N    D  P   
Sbjct: 340 KGEVMIIVDNEIPQMRNFIVGANETDYHIKN-VNYGRDFKADVVADIKNVIEGDKCPRCG 398

Query: 276 --RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  H
Sbjct: 399 SPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHH 458

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F 
Sbjct: 459 DEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFN 518

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ADLLG P+++ VG K V D  VEIK R     E++ + +V+    +     
Sbjct: 519 DADLLGIPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVVEKVKNIIKEK 569


>gi|326572669|gb|EGE22658.1| prolyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 572

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSS 225



 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 8/206 (3%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           +      +     A      D  N    D  P+ K V    RGIEVGHIF  G KYS  +
Sbjct: 367 EHKHTTGMNWDRDATITQIVDTRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKAL 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLI 352
           + +  G +GK   + MG YGIG  R++AA IE +HD  GIIW       DS+APF ++++
Sbjct: 427 NCSVLGKEGKPVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIV 486

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +K+ D       + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++
Sbjct: 487 PMKSKDGDAEAKAQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLA 546

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYA 438
           ++K E  +R TG ++ +SL+E++   
Sbjct: 547 ENKYEYTNRATGDQQMLSLDELLALF 572


>gi|282890339|ref|ZP_06298867.1| hypothetical protein pah_c016o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499721|gb|EFB42012.1| hypothetical protein pah_c016o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 641

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 153/447 (34%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  ++E   RD ++   KL L +  + + + G+    P G    + + A +R+ 
Sbjct: 225 KMLKDYLTSVEEAKKRDHKVLGAKLDLFS--LKEEAPGMPFIHPKGTIIWNELLAYLRQC 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +    IE+  PT+ + DLW  SG + +Y + M   ++  ++     P +       +R 
Sbjct: 283 LDDKNYIEIKTPTMMTRDLWELSGHWSNYRQNMFT-SEIENRDFAIKPMNCPGCMLYYRG 341

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I SYR LP    +I    R E      G+ R R F   DA+ F + P   +     +  
Sbjct: 342 QIHSYRELPLRVAEIGNVHRFEPSGSLSGLFRVRSFHQDDAHIF-MKPSDIRSEILNVLN 400

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   GL    +   + P                E     +    +          
Sbjct: 401 LAHEIYSTFGLTYR-LELSTRP----------------EKNTIGTDKEWEIATEGLKNAL 443

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      I E   A Y    D H +              R  + G I            
Sbjct: 444 DETGRPYRINEGDGAFYGPKIDFHIQDA----------INRTWQCGTI-QLDMALPEKFE 492

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   DG +   V +     G++     ++     G+  +W   ++P ++ LI +    
Sbjct: 493 LEYTAEDGSRQRPVMIHRAIFGSIERFFGILIEHFSGRFPLW---ISPLQVRLIPVA--- 546

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +    +  +  + G     D+  E +  +   A L      + VG + V +  V +
Sbjct: 547 DRHVEYARTLRKQFKQAGFHCDIDESNESVSKKVRNAQLSQINYMLTVGDQEVQNHTVNL 606

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  ++  EE+I        + 
Sbjct: 607 RTRENVVLGEIKPEELIASMLEEKRSR 633


>gi|326566943|gb|EGE17081.1| prolyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 572

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSS 225



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 8/206 (3%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           +      +     A      D+ N    D  P+   V    RGIEVGHIF  G KYS  +
Sbjct: 367 EHKHTTGMNWDRDATITQIVDIRNVVDGDPSPDGNGVISIKRGIEVGHIFQLGDKYSKAL 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLI 352
           + +  G +GK   + MG YGIG  R++AA IE +HD  GIIW       DS+APF ++++
Sbjct: 427 NCSVLGKEGKPVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIV 486

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +K+ D       + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++
Sbjct: 487 PMKSKDGDAEAKAQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLA 546

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYA 438
           ++K E  +R TG ++ +SL+E++   
Sbjct: 547 ENKYEYTNRATGDQQMLSLDELLALF 572


>gi|139439769|ref|ZP_01773160.1| Hypothetical protein COLAER_02191 [Collinsella aerofaciens ATCC
           25986]
 gi|133774919|gb|EBA38739.1| Hypothetical protein COLAER_02191 [Collinsella aerofaciens ATCC
           25986]
          Length = 573

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 155/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E+P DAE+ASH+L+LR GMI + + G+YS+LPL  +++  +  I+R+E
Sbjct: 5   MYMSKLYAPTLKEDPADAELASHRLLLRAGMIRKEAAGLYSYLPLAWRSIRKIENIVRDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A+LW ESGR D+YGKE++R  DR+ +  + GPTHEE +T + R+
Sbjct: 65  MDAAGAQELMMPIMVDAELWRESGRIDAYGKELVRFDDRHGREFVLGPTHEETVTALVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   Y IQ KFRDE RPRFG+MR REF+MKDAYSF  T E  +  Y+KM  +
Sbjct: 125 ELRSYKQLPVNLYHIQDKFRDEFRPRFGLMRGREFIMKDAYSFSATQESLQEEYDKMKQA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  I  R  +K++P+ A+SG IGGD S E++ LAD GE  +    + 
Sbjct: 185 YANICERCYIKALPVVADSGEIGGDTSVEYMALADAGEASLVYCDEC 231



 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +               +  F           +        +D+      D  P   +  
Sbjct: 349 DESLRESKQWACGANEVDYHFTGAC------PECDFTVDEWADLVTVVAGDPCPHCGKPL 402

Query: 279 A--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +  RGIEV  +F  GTKYS  M ATF   DGK+  + MG YG+G  R +AAV+E  +D  
Sbjct: 403 SAARGIEVSQVFQLGTKYSEAMGATFMDEDGKEKPLIMGCYGVGVSRSLAAVVEQHNDEH 462

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GI+WP SVAP+++++I +    + C   CE+I   L   G +V  DD  E+ G +FA  D
Sbjct: 463 GIVWPVSVAPYEVAVIPLDPKKEECATVCEQIVDGLCAEGIEVVVDDRDERPGFKFADND 522

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           L+GFP QV++G + + +  VE+K R TG RED++++EV+   +      R
Sbjct: 523 LMGFPYQVVLGKRGLKNGTVELKDRATGEREDVAIDEVVAKVAELVKAAR 572


>gi|254229498|ref|ZP_04922912.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262393498|ref|YP_003285352.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151937963|gb|EDN56807.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262337092|gb|ACY50887.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 571

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 149/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL   P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGSGSQEFHVLAESGEDIIAFS 224



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I     A      D+ N    D  P  K +    RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDAELGQVEDLRNVVEGDPSPCGKGIIQLKRGIEVGHIFQLGNAYSAAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGITRVVAAAIEQNHDKYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +  +++ ++I +   +  
Sbjct: 546 YKNRATGEKTPVAMTDIIEHVKAQLK 571


>gi|114600754|ref|XP_001153291.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 1 [Pan
           troglodytes]
          Length = 619

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 202 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 261

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 262 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 320

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 321 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 379

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 380 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 433

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 434 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 472

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 473 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 526

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 527 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 586

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 587 RDNKVHGERTISETIERLQQL 607


>gi|315607978|ref|ZP_07882971.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250447|gb|EFU30443.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 650

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 163/450 (36%), Gaps = 41/450 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQELLRSM 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +    L+V SG Y  YGK+  +       D+  +  P +     ++F
Sbjct: 287 LRPYNYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 ARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKAEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F+  G  +   +                  D  + + +      D       T
Sbjct: 406 IDIILKVFNIFGFDNYEAQISLR--------------DPNDKEKYIGS---DEVWEESET 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  +   +  +     AA      +         K    R  ++G I      Y+LP
Sbjct: 449 AIKEACAEKGLKARVELGEAAFYGPKLDF------MVKDAIGRRWQLGTI---QVDYNLP 499

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   D  K   V +     G++    AV+     G   +W   + P +++++ I
Sbjct: 500 NRFKLEYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAILPI 556

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  + +      VG     D+  E+IG +    +L   P  VIVG K  ++ 
Sbjct: 557 ---SEKYNDYAKSVARYFDSVGVRAIIDERNEKIGRKIRDNELKRVPYMVIVGEKESAEG 613

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ +  G +  M++EE     +   ++
Sbjct: 614 LVSMRKQGGGEQATMTMEEFAQRINSEVAD 643


>gi|296113641|ref|YP_003627579.1| prolyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921335|gb|ADG61686.1| prolyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|326568678|gb|EGE18749.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 572

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSS 225



 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 8/206 (3%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           +      +     A      D+ N    D  P+ K V    RGIEVGHIF  G KYS  +
Sbjct: 367 EHKHTTGMNWDRDATITQIVDIRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKAL 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLI 352
           + +  G +GK   + MG YGIG  R++AA IE +HD  GIIW       DS+APF ++++
Sbjct: 427 NCSVLGKEGKPVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIV 486

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +K+ D       + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++
Sbjct: 487 PMKSKDGDAEAKAQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLA 546

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYA 438
           ++K E  +R TG ++ +SL+E++   
Sbjct: 547 ENKYEYTNRATGDQQMLSLDELLALF 572


>gi|289662612|ref|ZP_06484193.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289668443|ref|ZP_06489518.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 564

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 224



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 403 RGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDEAGII 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +   L   G D   DD G + G+ FA  +LL
Sbjct: 463 WPAPMAPWQVVVCVINPKQDANVVAAAQALLDELIAAGLDAALDDRGLRPGAMFADMELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R     E++    + +   H
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARTADAAENLDRAGLFSRLGH 564


>gi|62422036|gb|AAX82600.1| putative threonyl-tRNA synthetase [Lactobacillus reuteri]
          Length = 601

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 162/438 (36%), Gaps = 36/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G   + 
Sbjct: 192 EAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGHQHVY 249

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-GPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +  Y  +M    D  D  M+   P +      +++ HI+SYR+LP
Sbjct: 250 TPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLESRPMNCPSHIQVYKHHIRSYRDLP 309

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++ +  R E      G+ R RE  + D ++F +T +  +  + K+    + ++   
Sbjct: 310 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VTLDQIRSEFAKILKLIMSVYEDF 368

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +     R                  D    + + + D M     S      D ++L+  
Sbjct: 369 DITDYSFRLSLR--------------DPKNVKKYYANDEMWEKSQSMLKSAMDDLNLD-- 412

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + +   +L  ++ +S   ++      FG         ++ G DGK
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERFG--------LSYVGQDGK 464

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +H  V +    +G M    A +   + G    W   +AP ++ +I +   ++   +  + 
Sbjct: 465 EHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTW---LAPEQVHIIPVN--EEAHGEYADN 519

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++      V      E++G +   A     P  ++VG    + + V +       + 
Sbjct: 520 LAKKMKAANIRVNVAHRNEKMGYKIREAQTQKVPYTLVVGDDEKNSNGVSVSKYGEKEQN 579

Query: 428 DMSLEEVINYASHRFSNN 445
           +MS E  +N      ++ 
Sbjct: 580 EMSQEAFMNEILEDIASY 597


>gi|222151097|ref|YP_002560251.1| proline-tRNA ligase [Macrococcus caseolyticus JCSC5402]
 gi|254782906|sp|B9EBE4|SYP_MACCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222120220|dbj|BAH17555.1| proline-tRNA ligase [Macrococcus caseolyticus JCSC5402]
          Length = 568

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 106/221 (47%), Positives = 155/221 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DA+  SH+L+L+ GMI Q + G+YS+LP+ ++ L+ + +I+REE
Sbjct: 1   MKQSKMFIPTLREVPSDADSKSHQLLLKAGMIKQVASGVYSYLPIAKRVLNKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                 +E+ +P LQ ++LW ESGR+ SYG E++R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MEAIDGVEILMPALQPSELWSESGRWQSYGAELMRMTDRHGREFALGPTHEEIITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF  T      +Y  M+ +
Sbjct: 121 ELKSYKKLPVTLFQIQNKFRDEKRPRFGLLRGREFIMKDAYSFHATEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           Y +IF RL L+  P+ A+SG IGG  +HEF+ LA+ GE  +
Sbjct: 181 YSKIFSRLNLQFRPVIADSGAIGGSHTHEFMALAEIGEDTI 221



 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 4/214 (1%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            + +   D+  + +         A       +  E   D     K     GIE+G +F  
Sbjct: 356 AVGANEDDYHYVNANVDRDFNVKAYGDFRFILEGEPAADGSGPVKFAE--GIEIGQVFKL 413

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GTKYS  M+ATF    G+   + MG YGIG  R ++AVIE  +D KGIIWP ++ P+++ 
Sbjct: 414 GTKYSESMNATFLNDQGRAEPMIMGCYGIGVSRTLSAVIEQHNDDKGIIWPTAITPYEVH 473

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +I++    +V ++  +++Y        +V +DD  E+ G +F  ADL+G P++V+VG K 
Sbjct: 474 IISVNPKQEVQKNLADQLYDTYRTQ-YEVLYDDRAERAGVKFNDADLIGIPVRVVVG-KQ 531

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +D  VE+K+R TG   ++ ++ +       +++
Sbjct: 532 AADGIVEVKNRRTGDAVEVHIDNLQETIQSIYAS 565


>gi|46447649|ref|YP_009014.1| threonyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|73919812|sp|Q6M9L0|SYT_PARUW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46401290|emb|CAF24739.1| probable threonine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 650

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 154/448 (34%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD ++   KL L +  + + + G+    P G    + + A IRE 
Sbjct: 230 KLLKDYLHQLEEAKKRDHKLLGAKLDLFS--LKEEAPGMPFIHPKGLIVWNQLVAYIREC 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R   IE+  PT+ + +LW  SG + +Y + M  ++   D+     P +       ++S
Sbjct: 288 LSRHDYIEIKTPTMMTKELWEISGHWGNYRQNMF-ISQIEDRDFAIKPMNCPGCMLYYKS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H  SYR LP    +I    R E      G+ R R F   DA+ F + P   +     +  
Sbjct: 347 HTHSYRELPLRIAEIGNVHRYEPSGSLSGLFRVRSFHQDDAHIF-MKPSDIQQEILGVLA 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   GL    +   + P                E     +    +          
Sbjct: 406 LADEIYSTFGLSYR-LELSTRP----------------EKNTIGTDHEWEVATAGLKGAL 448

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++     I E   A Y    D H                R  + G I            
Sbjct: 449 DEMGKEYRINEGDGAFYGPKIDFHIRDA----------INRSWQCGTI-QLDMALPEKFE 497

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +  +DG     V +     G++     ++   + GK  +W   ++P +I  I +    
Sbjct: 498 LEYTFSDGTRQRPVMIHRAIFGSIERFFGILIEHYVGKFPLW---LSPSQIRFITVADRH 554

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++  R    G  V  D   E +  +   A L  F   + +G + V      +
Sbjct: 555 E---PYARELAKRFKNAGFHVDVDSTQESVSKKVRNAQLAQFNYILTIGDQEVEHKTANL 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R   +  ++ ++E I          +
Sbjct: 612 RTRDNVVHGEIQIDEFIQKLEIEKQQRQ 639


>gi|326559635|gb|EGE10049.1| prolyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326560025|gb|EGE10420.1| prolyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326562507|gb|EGE12824.1| prolyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326567687|gb|EGE17793.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC1]
 gi|326574268|gb|EGE24216.1| prolyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
 gi|326575054|gb|EGE24983.1| prolyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 572

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSS 225



 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 8/206 (3%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           +      +     A      D+ N    D  P+ K V    RGIEVGHIF  G KYS  +
Sbjct: 367 EHKHTTGMNWDRDATITQIVDIRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKAL 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLI 352
           + +  G +GK   + MG YGIG  R++AA IE +HD  GIIW       DS+APF ++++
Sbjct: 427 NCSVLGKEGKPVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIV 486

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +K+ D       + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++
Sbjct: 487 PMKSKDGDAEAKAQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLA 546

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYA 438
           ++K E  +R TG ++ +SL+E++   
Sbjct: 547 ENKYEYTNRATGDQQMLSLDELLALF 572


>gi|307266366|ref|ZP_07547904.1| prolyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918602|gb|EFN48838.1| prolyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 570

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 117/268 (43%), Positives = 163/268 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +      ++ +          +     F
Sbjct: 241 NQEIDEEMLPKEKVYTPNVRTIEELVNF 268



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 109/232 (46%), Gaps = 4/232 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            GE  +    +           +  D    N +           +D+ N    D  P   
Sbjct: 340 KGEVMIIVDNEIPQMRNFIVGANETDYHIKN-VNYGRDFKADVVADIKNVIEGDKCPRCG 398

Query: 276 --RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  H
Sbjct: 399 SPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHH 458

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F 
Sbjct: 459 DEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFN 518

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ADLLG P+++ VG K V D  VEIK R     E++ + +V+    +     
Sbjct: 519 DADLLGIPIRITVGKK-VDDGIVEIKLREKEEAEEVKISDVVEKVKNIIKEK 569


>gi|223939080|ref|ZP_03630964.1| prolyl-tRNA synthetase [bacterium Ellin514]
 gi|223892240|gb|EEF58717.1| prolyl-tRNA synthetase [bacterium Ellin514]
          Length = 576

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+E P +AEI SHKL+LR G++ + S G+Y+++PLG +AL  V  I+REE
Sbjct: 1   MRWTQTLIPTLKETPAEAEITSHKLLLRAGLVRKLSGGLYTFMPLGLRALRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  ++W +SGRY +  +   ++ DR  K  I GPTHEEV+T +   
Sbjct: 61  MNRAGALELLMPAMQPPEIWEKSGRYVTASEVFFKVRDRAKKEWILGPTHEEVITTLVAG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FYQIQ KFRDE+RPRFG+MR++EF+MKDAYSFD+T E ++ SY KM+ +
Sbjct: 121 EISSYRQLPKNFYQIQTKFRDEIRPRFGLMRAKEFIMKDAYSFDVTDELAQISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK++ + A++G +GG  SHEF+V A+TGE +V   +      
Sbjct: 181 YTRIFQRCGLKAVAVEADTGVMGGKFSHEFMVPAETGENEVVYCEACNYSA 231



 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 115/262 (43%), Gaps = 17/262 (6%)

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            IF  +G       A  G +G     +  V ADT                   N D    
Sbjct: 330 EIFAAMG-------AHPGSLGAVNFTKAPVYADTQLRDAAEMTT-------GANEDGFHY 375

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +++   +     +     V   +   S  +      R IEVGH+F  GTKYS  + A F
Sbjct: 376 RNVSVERDIKVNHWVDLRSVQVSEACSSCGKP-LKIQRAIEVGHVFKLGTKYSEKLGALF 434

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVC 361
              DGK     MG YGIG  R + A+IE S+D  GIIWP SVAP+ + +  +  A     
Sbjct: 435 LDEDGKQKPAVMGCYGIGVTRTLQAIIEQSNDKDGIIWPVSVAPYTVCITPLGVAAGSAT 494

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               EKIY+ L   G DV  DD  E+ G +F  ++L+GFP+++ +G K ++  +VE+K R
Sbjct: 495 MVLAEKIYSELVAQGIDVILDDRDERPGVKFKDSELVGFPIRLGIGEKSLAKGEVELKLR 554

Query: 422 LTGIREDMSLEEVINYASHRFS 443
             G+   +  EE +        
Sbjct: 555 G-GVLTPVKTEEAVAKILETIK 575


>gi|320167861|gb|EFW44760.1| threonyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 726

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 161/441 (36%), Gaps = 43/441 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+   RD      +  L     H+ S G   +LP G +  + +   IR E    G  E+ 
Sbjct: 309 LEAAKRDHRKLGTEQSLF--FFHELSPGSCFFLPHGTRIYNTLMEFIRSEYWARGFTEVI 366

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW +SG +  Y + M    D   +     P +      +F    +S++ LP 
Sbjct: 367 TPNMYNSKLWQQSGHWQHYAENMFSF-DIEKEKFALKPMNCPGHCLMFDQAFRSHKELPI 425

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+E      G+ R R F   DA+ F   P    +  +        ++   G
Sbjct: 426 RFADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CKPSDIANEIDNALAFLKAVYTVFG 484

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                ++  + P G       I L D  E Q+  S +    P      D           
Sbjct: 485 FTF-QLKLSTRPEGFLG---DIALWDKAEKQLEESLNKFGAPWKLNPGDG---------- 530

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  A      +  + D+L  + + +   ++      FG KY  P        DG +
Sbjct: 531 -------AFYGPKIDITIMDALRRSHQCATIQLDFQLPIRFGLKYQAP--------DGTE 575

Query: 310 H-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    +G++  + A++  +  GK   WP  ++P +  +I +      C D   ++
Sbjct: 576 QTPVIIHRAILGSVERMIAILTENFAGK---WPFWLSPRQALVIAVSKD---CNDYAHEV 629

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L   G  V +D    E +  +   A L  +   ++VG++        ++ R   +  
Sbjct: 630 QKQLHDAGFHVDYDLWPDETLNKKVRNAQLAQYNFILVVGARERESRSANVRTRDNKVHG 689

Query: 428 DMSLEEVINYASHRFSNNRPV 448
           + ++ ++I   +   + +R +
Sbjct: 690 ERTIPQLIAEFTE-LAKSRAL 709


>gi|119631208|gb|EAX10803.1| threonyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 619

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 202 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 261

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 262 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 320

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 321 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 379

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 380 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 433

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 434 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 472

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 473 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 526

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 527 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 586

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 587 RDNKVHGERTISETIERLQQL 607


>gi|323495331|ref|ZP_08100409.1| prolyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323310402|gb|EGA63588.1| prolyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 571

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFS 224



 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQIEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNTYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGVPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   + +
Sbjct: 546 YKNRRSGEKTAVAMADIVEHVKAQLA 571


>gi|294664482|ref|ZP_06729831.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605740|gb|EFF49042.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 621

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 281



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 460 RGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGII 519

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ FA  +LL
Sbjct: 520 WPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMFADMELL 579

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R     E +    + +   H
Sbjct: 580 GIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRLGH 621


>gi|285019440|ref|YP_003377151.1| prolyl-tRNA synthetase [Xanthomonas albilineans GPE PC73]
 gi|283474658|emb|CBA17157.1| probable prolyl-trna synthetase protein [Xanthomonas albilineans]
          Length = 564

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 119/290 (41%), Positives = 159/290 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  ++REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR+  +G  MLR+ DR ++   Y PT EE   D  R 
Sbjct: 61  MNRAGALEVVFPTIQPRELWDATGRWKKFGDLMLRIRDRKEQDYCYSPTAEEAAADFARH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L+       Y  M  +
Sbjct: 121 ELNSYKQLPVNFYQIQSKFRDEIRPRFGVMRAREFLMKDAYSFHLSDTDLAREYENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+   ++A+SG IGGD S EF VLAD+GE  +  S                
Sbjct: 181 YHRIFTRLGLQFRAVQADSGDIGGDASQEFHVLADSGEDSLAFSTGSDYAANVEAAIAAT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                 +                       +P  + V +  +  G +F  
Sbjct: 241 PPPRAAASETLRKVATPTQKTCEEVAQLLGIPLQRTVKSVAVMAGDVFVL 290



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G +Y+  + AT    +GK   + MG YGIG  R+VAA IE +HD  GI 
Sbjct: 403 RGIEVGHVFQLGRQYAQALDATVLDENGKTVAMAMGCYGIGISRIVAAAIEQNHDAAGIR 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDAC-EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+ +++  I        DA  + + A L + G D   DD G + G+ FA  +L+
Sbjct: 463 WPQPMAPWAVAICVINPKHDPAIDAAGDALLADLQQAGLDAILDDRGLRAGTMFADIELI 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R  G  E ++   ++     
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARSGGDPESLNHTALLAKLRA 564


>gi|326391122|ref|ZP_08212668.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992821|gb|EGD51267.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 570

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 117/268 (43%), Positives = 163/268 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +      ++ +          +     F
Sbjct: 241 NQEIDEEMLPKEKVYTPNVRTIEELVNF 268



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 109/232 (46%), Gaps = 4/232 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            GE  +    +           +  D    N +           +D+ N    D  P   
Sbjct: 340 KGEVMIIVDNEIPQMRNFIVGANETDYHIKN-VNYGRDFKADVVADIKNVIEGDKCPRCG 398

Query: 276 --RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGHIF  GTKYS  + A +   +G +  + MG YGIG  R VAA+IE  H
Sbjct: 399 SLLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMGCYGIGINRTVAAIIEQHH 458

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP SVAP+ + ++ +   ++      E IYA L K G +V  DD   + G +F 
Sbjct: 459 DEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAGVKFN 518

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ADLLG P+++ VG K V D  VEIK R     E++ + +V+    +     
Sbjct: 519 DADLLGIPIRITVGKK-VDDGIVEIKLREKEEAEEVKISDVVEKVKNIIKEK 569


>gi|126277226|ref|XP_001373323.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 806

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 156/447 (34%), Gaps = 41/447 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + +       H  S G   +LP G    + +   I+EE +R
Sbjct: 390 MMKTWEKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIKEEYHR 449

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + ++ LW  SG +  Y + M    D   +     P +      +F    +
Sbjct: 450 RNFTEVISPNVYNSKLWETSGHWQHYSENMFSF-DIEKETFALKPMNCPGHCLMFAHRPR 508

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R +P       +  R+EL     G+ R R F   DA+ F    E  +           
Sbjct: 509 SWREMPIRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CRMEQIEEEMKGCLEFLQ 567

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 568 SVYTVFGFSF-QLNLSTRPENFLGEIEIWNQAEEQLQNSLKEFGKPWKLNPGDG------ 620

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L      
Sbjct: 621 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNLTY--VS 660

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           K +D K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C 
Sbjct: 661 KDSDDKTRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPCQVMVIPVGP---TCE 714

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   +I     + G     D D    +  +   A L  +   ++VG K   ++ V ++ R
Sbjct: 715 EYALQISKEFFEAGFMADVDLDQSCTLNKKIRNAQLAQYNFILVVGEKEKLNNAVNVRTR 774

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
              I  + S+   I+    +   +R +
Sbjct: 775 DNKIHGEASVVSTISKLK-KLKESRTL 800


>gi|326568855|gb|EGE18925.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 572

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S 
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSS 225



 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 8/206 (3%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPM 298
           +      +     A      D+ N    D  P+ K +    RGIEVGHIF  G KYS  +
Sbjct: 367 EHKHTTGMNWDRDATITQIVDIRNVVDGDPSPDGKGIISIKRGIEVGHIFQLGDKYSKAL 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP------DSVAPFKISLI 352
           + +  G +GK   + MG YGIG  R++AA IE +HD  GIIW       DS+APF ++++
Sbjct: 427 NCSVLGKEGKPVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIV 486

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +K+ D       + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++
Sbjct: 487 PMKSKDGDAEAKAQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLA 546

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYA 438
           ++K E  +R TG ++ +SL+E++   
Sbjct: 547 ENKYEYTNRATGDQQMLSLDELLALF 572


>gi|160943529|ref|ZP_02090762.1| hypothetical protein FAEPRAM212_01020 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445208|gb|EDP22211.1| hypothetical protein FAEPRAM212_01020 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103777|emb|CBL01321.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 594

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 166/451 (36%), Gaps = 41/451 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIR 58
           R++  L   ++  ++A    H+ + +   +        +G+  +LP G      +   I+
Sbjct: 175 RNQEELDAWEKEQQEARERDHRKIGKEMGLFMTDDLVGRGLPMFLPAGYTVWQELENYIK 234

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E++   G + +  P + + +L+  SG +D Y + M    +   ++ +  P +      I+
Sbjct: 235 EKERARGYLHVMTPCIGTVNLYKTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIY 294

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +   SYR+LP    +I   FR E      G+ R R F   DA+ F  TPE  K     +
Sbjct: 295 ANRPHSYRDLPMRIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLF-CTPEQIKSEVANV 353

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++    +                        D  + + +   D M         
Sbjct: 354 CDLIFEVYKDFNITDYRCVLSLR--------------DPADKKKYHDDDAMWNHAE---Q 396

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVH-NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              ++++   I        AA      +  +  ++     +S   ++    F    K+  
Sbjct: 397 ALREVLTELGIHFTEEIGEAAFYGPKLDVNVKPAVGAEYTLSTCQLD----FCLPAKF-- 450

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+   DG +   V +    +G++    A +     GK   W   +AP ++ ++ + 
Sbjct: 451 --HLTYVDKDGSEKTPVVLHRAILGSLDRFMAYLIEETKGKFPTW---LAPTQVKVLPV- 504

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDS 414
              +   +  + +  +LS  G  V  DD  ++IG +   A  +   P  +++G+K     
Sbjct: 505 --SEKTLEYAQDVTEKLSDAGIRVVLDDDNQKIGYKIRAAQQVDRVPYMLVLGAKEAEAG 562

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + ++ R  G   +MSLE+ I   +      
Sbjct: 563 NISVRDRK-GETAEMSLEDFIAKVTTEIRTR 592


>gi|294508832|ref|YP_003572891.1| threonyl-tRNA synthetase, class IIa [Salinibacter ruber M8]
 gi|294345161|emb|CBH25939.1| threonyl-tRNA synthetase, class IIa [Salinibacter ruber M8]
          Length = 656

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 152/442 (34%), Gaps = 43/442 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L T    Q   G+  WLP G      +  ++++EQ + G   +  
Sbjct: 244 KAKERDHRKLGTELNLFTFDTEQVGPGLPMWLPKGTTLRQTLQEVLQQEQVKQGYKPVCT 303

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           P +   DL+  SG Y  Y  +              +   +  P +      I+++   SY
Sbjct: 304 PHIGRLDLYRTSGHYPHYEDDQFPPMVTGEGDDGEEDGYLLKPMNCPHHVKIYQNDHHSY 363

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +    +R E      G+ R R F   DA+ F  TP   K  +  +    L++
Sbjct: 364 RDLPVRLAEFGTVYRQEQTGELGGLTRVRGFTQDDAHIF-CTPAQVKDEFKSVIDLTLKV 422

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG +    +                  D  +T+ +  +D +         D  + ++
Sbjct: 423 LDALGFEEFEAQISLR--------------DPDDTEKYTGRDALWTRAE---QDIREAVA 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
              +        AA      +         +    R  ++G I      Y+LP     T+
Sbjct: 466 ETDLDAYEEPGEAAFYGPKLDF------MVEDALGRAWQLGTI---QVDYNLPERFELTY 516

Query: 303 KGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D +   V +     G++     V+     G    W   +AP ++ +I +       
Sbjct: 517 VDEHDERKRPVMIHRAPFGSLERFIGVLIEHCGGNFPTW---LAPTQVQIIPVGDD---F 570

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++ A L      V  D   E +G +   A+    P  ++VG        V ++  
Sbjct: 571 VDYAQEVAATLRAEDVRVEIDTSDETVGYKIREAETQKVPYMLVVGGDEEEAGTVSVRSH 630

Query: 422 LTGIREDMSLEEVINYASHRFS 443
             G +  +S+++ ++     F 
Sbjct: 631 ADGPQGTVSVQDFLDRTGPEFE 652


>gi|254517451|ref|ZP_05129507.1| prolyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226911200|gb|EEH96401.1| prolyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 570

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + GIY+++PLG K L NV  I+REE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMASGIYNYMPLGLKVLKNVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +Q A+LW ESGR+D YG E++RL DRN++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASAVQPAELWQESGRWDVYGAELIRLKDRNNREFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   EG   SYNKM  +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDKDQEGLDVSYNKMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF+R G+ + P+ A+SG IGG  S EF+V ++ GE  V          
Sbjct: 181 YIKIFNRCGIDAKPVEADSGAIGGSNSAEFMVRSEVGEDDVVFCTACDYAA 231



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                E     +   K   +RG EVGHIF  GTKYS  M+A F   +GK+    MG YGI
Sbjct: 382 YRNITEGEKCPVCGGKVTISRGTEVGHIFKLGTKYSEAMNANFIDENGKEKPFIMGCYGI 441

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R +A++IE  +D  GI+WP SVAP+ +++I +   D+       +IY  L  +G D 
Sbjct: 442 GVTRTMASIIEQHNDENGIVWPLSVAPYHVNIIPVNIKDEEQMKIANEIYEDLKSIGVDA 501

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  +DL+G P+++ VG K V D +VE K R T   E++ +EE ++   
Sbjct: 502 ILDDRNERAGVKFKDSDLMGIPMRITVGKKIV-DGEVEFKLR-TSDMENIKIEEAVDRVR 559

Query: 440 HRFSNNR 446
             F  N+
Sbjct: 560 EEFKKNK 566


>gi|296536619|ref|ZP_06898695.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263053|gb|EFH09602.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 660

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 147/446 (32%), Gaps = 52/446 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +  G+ H  + + G   W P G +    +   +R  Q  
Sbjct: 232 YLHQLEE----AERRDHRKIGKEMGLFHLQEEAVGSIFWHPKGWRLYTTLQDYMRRRQEA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFR 119
            G  E+  P L    LW  SG +D Y + M           D+ +   P +      IF 
Sbjct: 288 GGYQEVRTPQLVDRKLWEASGHWDKYRENMFIATVDDESEKDRVLALKPMNCPCHVQIFN 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR LP    +     R E      G+MR R F+  DA+ F    + +  +     
Sbjct: 348 HGLRSYRELPLRMAEFGACHRYEPSGALHGIMRVRSFVQDDAHIFCAEDQIAAETVE-FV 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG     ++    P     S E    ++    +            P E   
Sbjct: 407 ALLSAVYRDLGFTDFRVKFSDRPEKRAGSDETWDRSEGALKEACRIAGVEYELNPGEGAF 466

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               +    R  + G        + LP 
Sbjct: 467 YGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDFVLPE 496

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A + G DG  H  V +    +G+      ++   H G+  +W   +AP ++++  I 
Sbjct: 497 RLDAEYVGEDGNRHRPVMLHRAILGSFERFLGILIEEHAGRFPLW---LAPVQVAVATIV 553

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                         A   K G  V  D   E+I  +         P+  ++G +     K
Sbjct: 554 DEAAPFAREA---AAAFRKAGLSVELDLRNEKINRKVVDHIEQRVPVLAVIGRREAEQGK 610

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++      + +MSL E +   +  
Sbjct: 611 VVLRRLPGREQVEMSLAEAVATLAAE 636


>gi|224613500|gb|ACN60329.1| Threonyl-tRNA synthetase, cytoplasmic [Salmo salar]
          Length = 383

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 142/410 (34%), Gaps = 40/410 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            S G   +LP G    + +   I+ E  R G  E+  PTL S  LW  SG ++ Y + M 
Sbjct: 1   VSPGSCFFLPKGAHIYNTLADFIKTEYRRRGFHEVVTPTLYSTALWERSGHWEHYSENMF 60

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
            +   +       P +      +F   ++S+R LP  +       R+EL     G+ R R
Sbjct: 61  TVTG-DTHTYALKPMNCPAHCLMFEQRVRSWRELPLRWADFGALHRNELSGALGGLTRVR 119

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE  +            ++   G     +   + P      H     
Sbjct: 120 RFCQDDAHIF-CTPEQLEEEIMACLDFVRSVYRVFGFSFHCL-LSTRPTPCLGEHALWDH 177

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A+    +            P +                     A      + ++ D++  
Sbjct: 178 AEQQLERSLQQFGERWQLNPGDG--------------------AFYGPKIDIQIKDAIGR 217

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESS 332
             + +   ++    F    ++       + G DG+ H   M     +G++  + A++  +
Sbjct: 218 QHQCATIQLD----FQLPIRF----DLQYVGGDGETHRPVMVHRAVLGSLERMIAILAEN 269

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
             GK   WP  ++P ++ +I +    +      +++  +  + G     DD  G  +  +
Sbjct: 270 FGGK---WPLWLSPAQVIIIPVGGGSET---YAQQVVRQFREAGFMADVDDDQGATLNKK 323

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              A L  +    +VG K      V ++ R          EEV+   SH 
Sbjct: 324 IRSAQLAQYNYIFVVGEKECESGTVSVRTRGGKQLGRRPTEEVLASLSHL 373


>gi|255071699|ref|XP_002499524.1| predicted protein [Micromonas sp. RCC299]
 gi|226514786|gb|ACO60782.1| predicted protein [Micromonas sp. RCC299]
          Length = 613

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 141/430 (32%), Gaps = 36/430 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD       L L +        G+  W P G    D +    ++     G   +  
Sbjct: 210 EAARRDHRKVGKDLNLFSIQQEDVGGGLVFWHPKGALMRDMIERFWKDIHLERGYDLLYT 269

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +   DLW  SG  D Y + M R  D  D+     P +      +++    SYR+LP  
Sbjct: 270 PHVGKLDLWKTSGHADFYSENMYRPIDVEDETYQLKPMNCPFHVAVYKDGYFSYRDLPIR 329

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+ R R F   DA+ F L P+        +      I    G 
Sbjct: 330 WAEMGTVYRYERSGTMHGLFRVRGFTQDDAHIFCL-PDQIADEIKGVLDLTEDILSTFGF 388

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           K   +   + P       E    A+         K +                       
Sbjct: 389 KEFEVNLSTQPEKSVGGPEIWDKAEGALKDALAQKGWDYEVDEGGG-------------- 434

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + K+ D++    + S   ++    F    ++ L         + K  
Sbjct: 435 ------AFYGPKIDIKILDAIGRKWQCSTVQLD----FNLPERFDLAY---IDKENVKQR 481

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + +     G++     ++  ++ G   +W   +AP ++ L+ +        D  ++   
Sbjct: 482 PIMIHRAIFGSLERFFGILTENYAGAFPLW---IAPTQVRLLPVT---DAVDDYVQETAR 535

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G         E++      A+    P+  +VG +   D  + ++    G +  +S
Sbjct: 536 KLRAAGIRCDV-QSQERLAKLVRNAEKAKIPVMCVVGEQEAKDGTLAVRTYADGDQGVLS 594

Query: 431 LEEVINYASH 440
           +++V+   S 
Sbjct: 595 VDDVVARISA 604


>gi|254521784|ref|ZP_05133839.1| prolyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219719375|gb|EED37900.1| prolyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 567

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQVFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQ+Q KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQVQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVFS 224



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +   ARGIEVGH+F  G  Y+  + AT    +GK   + MG YGIG  RVVAA IE +HD
Sbjct: 401 ELKIARGIEVGHVFQLGRTYAKALDATVLDENGKAAVMAMGCYGIGISRVVAAAIEQNHD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GIIWPD++AP+++ +  I    D    DA   +   L   G D   DD G + G+ FA
Sbjct: 461 DAGIIWPDAMAPWQVVVCVINPKGDAAVADAAASLLQELRDAGLDAALDDRGLRPGAMFA 520

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +L+G P +V+V  + ++    E + R     E +    ++    
Sbjct: 521 DMELIGIPHRVVVSERGLAAGTYEYRSRRASEAESLDKATLLQRLQ 566


>gi|28899107|ref|NP_798712.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364768|ref|ZP_05777355.1| proline--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260876810|ref|ZP_05889165.1| proline--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260895895|ref|ZP_05904391.1| proline--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|81839761|sp|Q87MC3|SYP_VIBPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28807331|dbj|BAC60596.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089375|gb|EFO39070.1| proline--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308091476|gb|EFO41171.1| proline--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308115298|gb|EFO52838.1| proline--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|328474355|gb|EGF45160.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 571

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLAD+GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLADSGEDLIAFS 224



 Score =  225 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           + +  G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCSVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDIELIGIPHTIVIGDRSMDEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +  +++ +++ +   +  
Sbjct: 546 YKNRRTGEKTPVAMADIVEHVKSQLK 571


>gi|116872750|ref|YP_849531.1| prolyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463747|sp|A0AIC0|SYP_LISW6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116741628|emb|CAK20752.1| prolyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 568

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 149/235 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AIIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLLPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y  M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYKLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L++ GE  +  S           
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSEIGEDTIAYSDASDYAANTEM 235



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D     ++         +  D+   +  D  P+ + V     GIEVGHIF  GTKYS  M
Sbjct: 363 DGYHYVNVNPNRDFEVTSYFDLRMIQAGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT    +G+   + MG YGIG  R+++A+ E S+D  G++W   ++PF + LI +    
Sbjct: 423 NATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGLVWDKQISPFDLHLIPVNMKS 482

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      E +Y  L K G  V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+
Sbjct: 483 EEQVAFAESLYDSLQKAGFSVLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGIVEV 541

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           K R TG   ++  +E++N     F + 
Sbjct: 542 KIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|169344114|ref|ZP_02865097.1| prolyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169297725|gb|EDS79824.1| prolyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 570

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 153/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E   P L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLAPALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE  V          
Sbjct: 181 YVNIFNRCGLDAKTVAADSGAIGGSGSAEFMVKSEVGEDDVVFCTACDYAA 231



 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 75/196 (38%), Positives = 102/196 (52%), Gaps = 3/196 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADG 307
                      D  N  + +  PE  +     RG EVGHIF  GTKYS  M ATF   DG
Sbjct: 370 NYGRDFEGIVGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDG 429

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K     MG YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I     ++      E+
Sbjct: 430 KAKPFIMGCYGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATKAEE 489

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L K+G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E
Sbjct: 490 IYNELRKMGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVE 548

Query: 428 DMSLEEVINYASHRFS 443
            +S+EEV N     F 
Sbjct: 549 TLSIEEVYNRVREEFE 564


>gi|27365189|ref|NP_760717.1| prolyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|81844691|sp|Q8DBH9|SYP_VIBVU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27361336|gb|AAO10244.1| prolyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 571

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 150/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAFS 224



 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  K   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SERVQEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   +  
Sbjct: 546 YKNRRSGEKTPVAMADIVEHIKAQLK 571


>gi|78037678|emb|CAJ25423.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 621

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 281



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 460 RGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGII 519

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ FA  +LL
Sbjct: 520 WPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMFADMELL 579

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R     E +    + +   H
Sbjct: 580 GIPHRVVVSERGLAAGTFEYRARTADAAESLDKAALFSRLGH 621


>gi|257791654|ref|YP_003182260.1| threonyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|257475551|gb|ACV55871.1| threonyl-tRNA synthetase [Eggerthella lenta DSM 2243]
          Length = 637

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 157/437 (35%), Gaps = 49/437 (11%)

Query: 17  DAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +AE   H+ + R   I+        G+  +LP G + +  +   +R +    G  E+  P
Sbjct: 234 EAEKRDHRKLGRELGIYTMDPLAGVGLPMYLPKGARVIRTMQEWLRRDLYERGYEEVITP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRL-----ADRNDK--AMIYGPTHEEVMTDIFRSHIKSY 125
            + +AD+W  SG Y  Y + M         D + +       P +      +++S + SY
Sbjct: 294 HVYNADVWKTSGHYGFYKENMYFFNINEGTDEDPRLTEYAVKPMNCPGHVMLYKSELHSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  +++    +R E+     G++R+R F   DA+ F  T +        +      I
Sbjct: 354 RDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVF-CTRDQVVDEVVAILDLVDHI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +       + P     + +    A     +  C++  + + I   +  F     
Sbjct: 413 MSTFGFQY-EAEISTRPEKSIGTDDMWEHATNALKE-ACARHELAYDINEGDGAFYG--- 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                              + K+ D++    + S   ++                 T++ 
Sbjct: 468 ----------------PKIDIKVKDAIGRTWQCSTVQVDFNMPER--------FELTYRT 503

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +    M      G++     ++   + G   +W   +AP +++++ +        +
Sbjct: 504 EDNTEERPWMLHRAIFGSIERFLGILIEHYAGALPLW---LAPVQVAVLPLA---DRHNE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A  ++  +L   G  +   D  E +  + A A     P  V++G K + +  V ++ R  
Sbjct: 558 AAAELAKQLKAAGGRIEVYDQNEPMRVKIAKAQSQKIPYMVVLGDKEIENGTVSVRERHE 617

Query: 424 GIREDMSLEEVINYASH 440
           G      +E+++     
Sbjct: 618 GDLGAWPVEQLVEKLRE 634


>gi|281419389|ref|ZP_06250404.1| prolyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|281407009|gb|EFB37272.1| prolyl-tRNA synthetase [Clostridium thermocellum JW20]
          Length = 572

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 112/250 (44%), Positives = 154/250 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++   +         +     
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSGSQEFMVKSAVGESRIAYCEACGYAANDEKAECVP 240

Query: 241 DIISLNSIVE 250
           +    +    
Sbjct: 241 EKCCDDKECC 250



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSA 300
               ++            D+   K  D+ P+         GIEVGHIF  GTKYS  +  
Sbjct: 366 FHYKNVNINRDFKPKYVKDIRTIKEGDACPKCGAPVKVEFGIEVGHIFKLGTKYSEALDC 425

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +    GK+  + MG YGIG  R +AAVIE ++D  GIIWP S+AP+ + +I +   D V
Sbjct: 426 IYLDETGKERPMIMGCYGIGINRSMAAVIEQNNDENGIIWPISIAPYHVIVIPVNTTDSV 485

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIY +L ++G +V  DD  E+ G +F  ADL+G P+++ VG +   +  VE K 
Sbjct: 486 QMELAEKIYTQLGEMGIEVLLDDRDERPGVKFKDADLIGIPIRITVGKR-AGEGIVEYKL 544

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R       +  EE I  A    + 
Sbjct: 545 RREKDFAAIPYEEAIAKAKKEVAE 568


>gi|325912604|ref|ZP_08174987.1| threonine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|325478025|gb|EGC81154.1| threonine--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 643

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 163/436 (37%), Gaps = 37/436 (8%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D +   H+ + R   +     +   G+  W+P G      +   I +++   G   +  P
Sbjct: 234 DIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + D +  SG +  Y ++M    D  D  M+   P +      I+  HI+SYR LP  
Sbjct: 294 VLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIR 353

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++    +
Sbjct: 354 IAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDI 412

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T  + + D M            D + L  +  
Sbjct: 413 TDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEA 458

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + +   +L  ++ +S   ++    F    +++L    ++ G DG++H
Sbjct: 459 --EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----SYVGKDGEEH 508

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M     +G M    A +   + G    W   +AP ++ +I +   +    +  + + 
Sbjct: 509 RPVMVHRGIVGTMERFIAYLTEIYKGAFPTW---LAPLQVKIIPVN--NDAHGEYAQNVK 563

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  
Sbjct: 564 DQLMKLGFRSEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESK 623

Query: 430 SLEEVINYASHRFSNN 445
           +L E ++  S   ++ 
Sbjct: 624 ALSEFVSELSADVASY 639


>gi|37680756|ref|NP_935365.1| prolyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|81859846|sp|Q7MIE5|SYP_VIBVY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|37199505|dbj|BAC95336.1| prolyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 571

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 150/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAFS 224



 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  K   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SERVQEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ Y   +  
Sbjct: 546 YKNRRSGEKTPVAMADIVEYIKAQLE 571


>gi|307719284|ref|YP_003874816.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306533009|gb|ADN02543.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 578

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 160/444 (36%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L +  +H+ +  G+  W P G +    +    RE+   
Sbjct: 168 QYLEHLKEVEKRDHRRLGKELDLFS--VHEEAGPGLIYWHPKGARIRLEIENFWREQHLA 225

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  A LW  SG    Y + M    + +       P +      I+++ ++
Sbjct: 226 RGYEVLYTPHIGKAWLWETSGHLSFYKENMYAPMEVDKSDYYIKPMNCPFHIMIYKTRLR 285

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + ++   +R E      G++R R F   DA+ F  TPE  +    +     L
Sbjct: 286 SYRELPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHIF-CTPEQIEDEILETLRFSL 344

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   +     + P       E    A TG  +    ++ +D+ +      F   
Sbjct: 345 FMWETFGFSDVKAYLSTRPEKSVGEPERWEQA-TGSLRKAIEREGLDYEVDEGGGAFYG- 402

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                                + K+ D+L    + S    +    F    ++      T+
Sbjct: 403 ------------------PKIDIKVRDALGREWQTSTIQFD----FNLPERF----DITY 436

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG++     +    +G++     ++   + G   +W   +AP ++ +I +     V 
Sbjct: 437 VDADGREKRPYMVHRALLGSLERFFGILIEHYGGAFPVW---LAPVQVVVIPV---SDVF 490

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++   L + G     D   +++ ++   A     P  VIVG +      V ++ R
Sbjct: 491 AGYAQEVVRALREAGVRAEADLSADRMNAKIRKAQQEKIPYAVIVGQREQEGRTVSVRVR 550

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  ++L   +   + R    
Sbjct: 551 GGEQRNGVALGAFVEDVARRMRER 574


>gi|172039373|ref|YP_001805874.1| prolyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171700827|gb|ACB53808.1| prolyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 623

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 113/271 (41%), Positives = 156/271 (57%), Gaps = 3/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 21  MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+++Y K    M  L DR D+ +  GPTHEEV+T +
Sbjct: 81  MNAAGAQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQDRELGLGPTHEEVITTV 140

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY+ M
Sbjct: 141 AKDMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNEDEASLQRSYDAM 200

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D        +  
Sbjct: 201 DQAYRNIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTEDGKYAANVEKAV 260

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                +  +             + +     F
Sbjct: 261 SLPKDVKTSPFTTYEKKETPDCNTIEKLCQF 291



 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 21/237 (8%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+  AD     +  +    DF +P    D    +  +  V   +   A            
Sbjct: 405 FVTGADETGYHIVGASWNKDFKLPQLICDIRTAMIGDRAVHDTSQTLA------------ 452

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                   SARGIEVGHIF  GTKYS  M ATF   +G++  + MG YG+G  R+  A +
Sbjct: 453 --------SARGIEVGHIFQLGTKYSEAMGATFTDENGEEKPIVMGCYGVGVSRLAQAAV 504

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+++ +I    +DQ   +  + +Y +L+K+G +   DD  E+ G
Sbjct: 505 EQSYDKDGIIWPVAIAPYQVIIIVPNINDQNQIEVAQNLYDKLNKMGVETLLDDRDERAG 564

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +F  ADL+G P +V+ G + +   KVE+  R +   +++ ++ ++    +     +
Sbjct: 565 VKFKDADLIGIPYRVVTG-RSLKSGKVEVVTRKSKESQEIEVKNLVETLHNWVEQGK 620


>gi|320155572|ref|YP_004187951.1| prolyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319930884|gb|ADV85748.1| prolyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 571

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 150/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAFS 224



 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  K   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SERVQEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMDEGHFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   +  
Sbjct: 546 YKNRRSGEKTPVAMADIVEHIKAQLK 571


>gi|224476386|ref|YP_002633992.1| prolyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420993|emb|CAL27807.1| putative prolyl-tRNA synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 566

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P ++E P +AE  SH+L+L+ G+I Q + G+YS+LPL  + L+ + AI+REE
Sbjct: 1   MRQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGVYSYLPLATRVLNKITAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQPSELWEESGRWDAYGSELMRLTDRNGRQFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +YN+M+ +
Sbjct: 121 EVKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDETYNQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++     
Sbjct: 181 YSRIFKRAGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSENSDYAA 231



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E + D  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSETMNATFLDNQGKAKPLIMGCYGIGVSRTLSAIVEQNSDENGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI I       R+  ++IYA L +   +V +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLITINPKKDDQRELGDQIYAELQQS-YEVLYDDRKERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P++++VG +   +  VE+K R  G  E++ +  + +Y  + ++ 
Sbjct: 523 PIRIVVGKR-ADEGIVEVKRRDNGESEEVEVSNLASYIDNLYTQ 565


>gi|189183871|ref|YP_001937656.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|238692247|sp|B3CSS5|SYT_ORITI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189180642|dbj|BAG40422.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 648

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 151/453 (33%), Gaps = 57/453 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L        ++G+  W   G      +   I  +  R G
Sbjct: 232 YLHRLSEAQKRDHRKLGRELELF--HFQDEAQGMPFWHSKGWTIFKIIKDYISCQIQRAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------------ADRNDKAMIYGPTHE 111
            IE++ P + +  LW +SG ++ + + M  L              +     A+   P + 
Sbjct: 290 YIEVNTPMVLNQKLWEKSGHWEKFRENMFTLDTNAAEQDHNLIKDSIETKCALALKPMNC 349

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGS 170
                IF   IKSYR+LP    +     R E      G+MR R F+  DA+ F  T +  
Sbjct: 350 PGHIQIFNYTIKSYRDLPLRMAEFGSCHRYEPSGALYGLMRVRSFVQDDAHIF-CTEDQI 408

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                K      +++   G   + ++    P     + +    A+        +      
Sbjct: 409 TDETIKFCHLLKQVYQDFGFPEVKIKFSDRPEKRAGTDKIWDKAEQALIHAIQTLGEEYT 468

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
               E   +   +                                    R  + G     
Sbjct: 469 INRGEGAFYGPKLEFILTD---------------------------AIGREWQCGT---L 498

Query: 291 GTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              + LP  ++A++  ++G K   V +    +G+      ++   + GK  IW   +AP 
Sbjct: 499 QVDFVLPERLNASYISSEGSKKRPVILHRAILGSFERFIGILIEHYSGKLPIW---LAPI 555

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++++++I        +  ++++  L         D   ++I  +         PL  I+G
Sbjct: 556 QVAVVSIT---DEAVNYAKQLHQELIDNNIRSTLDISNQKINYKIRNFFTAKVPLIAILG 612

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            K     K+ I+   +  +  +S  E+I +   
Sbjct: 613 KKESESGKIAIRTLGSQEQHVISSSELIAHIRK 645


>gi|255994086|ref|ZP_05427221.1| proline--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993754|gb|EEU03843.1| proline--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 582

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK +   L+E P +AE+ SH L+LR GMI + + G+Y ++P+G KAL  +  IIR E
Sbjct: 1   MRLSKAYFKTLREVPAEAELKSHILLLRAGMIRKLASGVYGYMPMGLKALKKIENIIRNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  LQ A+LW ESGR+++YG EM R+ DR+D+    GPTHEEV TDI R+
Sbjct: 61  MDAEGCQEILMSALQPAELWKESGRWNAYGPEMWRVCDRHDREFCLGPTHEEVFTDIIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S+R LP   YQIQ K+RDE RPRFG+MRSREF+MKD+YSFD   EG   SY  M+  
Sbjct: 121 DVDSHRKLPINLYQIQTKYRDEARPRFGLMRSREFIMKDSYSFDKDEEGLDVSYENMYKR 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F R+ L  +P+ A++G +GG+ SHEFI  AD GE+++          
Sbjct: 181 YENVFKRMELDVMPVEADTGAMGGNGSHEFIAKADAGESEIAFCPSCKMAA 231



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 268 FDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            D  P         RGIEVG +F  GTKYS PM A +K  D  +  + MGSYGIG  R +
Sbjct: 395 GDPCPVCGEKILYTRGIEVGQLFKLGTKYSEPMKAIYKDEDMNERLMYMGSYGIGVSRTL 454

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AAVIE + D  GIIWP  VAP+ + +  I   D+      E IY +L K   DV  DD  
Sbjct: 455 AAVIEQNSDENGIIWPLPVAPYHVIITLINPSDKDQTALAEDIYEKLRKSNIDVILDDRD 514

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR------LTGIREDMSLE--EVINY 437
           E+ G +F  ADL+G P ++ VG +  +D KVE K R          RE + ++  E +  
Sbjct: 515 ERPGVKFKDADLIGIPFRINVG-RDAADGKVEFKVRGSNYGMDMKKRETVVIDSNEAVKN 573

Query: 438 ASHRFSNN 445
                S N
Sbjct: 574 IISVVSEN 581


>gi|148239112|ref|YP_001224499.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166225511|sp|A5GJT7|SYT_SYNPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147847651|emb|CAK23202.1| Threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 610

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 155/441 (35%), Gaps = 38/441 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEEFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L PE       K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILKILDLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P           LA  G  +    K +                      
Sbjct: 381 FNTYEINLSTRPEKSIGDDAVWDLATKGLIEALERKGWAYKIDEGGG------------- 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
                  A      + K+ D++    + S   ++    F    ++       +  ADG K
Sbjct: 428 -------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERF----KLDYIAADGSK 472

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++     ++  ++ G   +W   +AP ++ L+ +       +   E +
Sbjct: 473 QRPIMIHRAIFGSLERFFGIMTENYAGDYPLW---LAPEQVRLLPVT---DEVQPYAESL 526

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L++ G     D  G+++G      + +  P+  ++G+K    + V ++ R  G    
Sbjct: 527 LDQLTQAGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGV 586

Query: 429 MSLEEVINYASHRFSNNRPVL 449
           +++ +++  A +  S     L
Sbjct: 587 VAVADLLRAAQNANSQRAAGL 607


>gi|317503053|ref|ZP_07961132.1| threonine--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315665826|gb|EFV05414.1| threonine--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 649

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 161/458 (35%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQKLLRSL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +    L+V SG Y  YGK+  +       D+  +  P +     +++
Sbjct: 287 LRPYHYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 ARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKSEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F      +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFKTFHFDNYEAQISLR--------------DPKDKEKYIGSDEIWEESENAIR 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
           +      L                 H E    +    K        +G  +  GT    Y
Sbjct: 452 EACKEKGL---------------VAHEEIGEAAFYGPKLDFMVKDAIGRKWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPARFKLEYTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D  +++      VG     DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYAKQVGQYFDTVGVRSVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++  V ++ +  G +  M +EE     +   ++    L
Sbjct: 611 AEGLVSMRKQGGGEQATMKMEEFAKRITDEVADQLKTL 648


>gi|153836755|ref|ZP_01989422.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260900371|ref|ZP_05908766.1| proline--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|149749901|gb|EDM60646.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308108556|gb|EFO46096.1| proline--tRNA ligase [Vibrio parahaemolyticus AQ4037]
          Length = 571

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 148/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y + F R+GL+  P+ A+SG IGG  S EF VLAD+GE  +  S
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLADSGEDLIAFS 224



 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           + +  G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 426 NCSVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++  EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SERVKEEAEKLYAELTAMGIEVLFDDRKERPGVMFSDIELIGIPHTIVIGDRSMDEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +  +++ +++ +   +  
Sbjct: 546 YKNRRTGEKTPVAMADIVEHVKSQLK 571


>gi|319760484|ref|YP_004124422.1| threonyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039198|gb|ADV33748.1| threonyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 411

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 149/434 (34%), Gaps = 44/434 (10%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             +D    S++L L        + G+  W   G      +   IR++  +    E+  P 
Sbjct: 9   KKKDHRTLSNQLDLF--HTQDDAPGMIFWHKNGWIIFQELKKFIRKKLQQYQYQEVKSPI 66

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +   +LW ++G +D+Y + +   A  N +     P +      IF   IKSY++LP    
Sbjct: 67  MIDQELWKKTGHWDNYYEHIFITASEN-RTYCIKPMNCPGHIQIFNYGIKSYKDLPLRIA 125

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR REF   DA+ F  + E      N        ++H  G K 
Sbjct: 126 EFGHCHRNEPSGSLHGLMRIREFTQDDAHIF-CSIEQIPTELNYCIKMMYDVYHTFGFKK 184

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + PI          + +     +   K+      P +   +   I    +    
Sbjct: 185 IIVKLSTRPIKRIGEDSIWDITEQCLVHILQKKNIEFTYQPQDGAFYGPKIEFILLD--- 241

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH 310
                                      R  + G +      +SLP  + A +   + K  
Sbjct: 242 ------------------------SLKRAWQCGTV---QLDFSLPKLLKAKYIDNNNKYQ 274

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++     +I   + G     P  +AP +I L+N+     +       I 
Sbjct: 275 IPVMIHRAILGSIERFIGLITEEYSG---FLPTWLAPTQIVLMNVTDAQSL---YVTNIA 328

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL      V  D   E+IG +  +  +   P  +I G+  V    + I+        + 
Sbjct: 329 NRLKFENFRVQIDLRNEKIGCKIRLHTMHRVPYMIICGNSEVDHGTISIRTFRGRKINNY 388

Query: 430 SLEEVINYASHRFS 443
           +++  I       +
Sbjct: 389 NIDTFIQKLKQEIN 402


>gi|328866339|gb|EGG14724.1| threonyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 706

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 159/428 (37%), Gaps = 39/428 (9%)

Query: 17  DAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A    H+ + +       H +S G   +LP G +  + +   IR E +R G  E+  PT
Sbjct: 308 EAAKRDHRNVGKAQELFFFHPYSPGCTFFLPHGTRIYNKLVEFIRFEYHRRGFSEVITPT 367

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + S  LW +SG +  Y + M  +   N    +  P +      +F S  +SYR LP  F 
Sbjct: 368 MFSQSLWEQSGHWAKYSENMFPVKCDNSNYSM-KPMNCPGHCLMFASRSRSYRELPIRFA 426

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E+     G+ R R+F   DA+ F  T   ++            ++   G + 
Sbjct: 427 DFGVLHRNEMAGALTGLTRVRKFQQDDAHIF-CTLAQTETEIKSCLEFMQHVYGIFGFEF 485

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P     S E    A+        +        P +                 
Sbjct: 486 -SLELSTRPENRLGSDEMWDKAEKSLEVALTNFGKPWKLNPGDG---------------- 528

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               A      +  + D L  + + +   ++    F    ++ L    T K  D +   V
Sbjct: 529 ----AFYGPKIDIHITDVLKRSHQCATIQLD----FQLPIRFELEYM-TDKAEDLQR-PV 578

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++  + A++     GK   WP  V+P +  ++ +    Q   +  +++  ++
Sbjct: 579 IIHRAILGSVERMMAILIEHTGGK---WPFWVSPRQAIIVPV---SQQFNEYADQLQKKI 632

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D   + +  +   A L  +   ++VG K   ++ V ++ R   +R+ +SL+
Sbjct: 633 VDAGFYCDVDGSDKTLPKKVREAQLAQYNYILVVGQKEKDENTVGVRTRDNVVRDAISLD 692

Query: 433 EVINYASH 440
            ++     
Sbjct: 693 ALLAEFDQ 700


>gi|162447220|ref|YP_001620352.1| threonyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|189083597|sp|A9NF46|SYT_ACHLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161985327|gb|ABX80976.1| threonyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 642

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 172/443 (38%), Gaps = 36/443 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD       L +      +   G+  WLP G      +   I +++   G 
Sbjct: 230 LVMLEERKLRDHRKIGKDLDIFM-TSQEVGSGLPFWLPKGATIRRIIERYITDKELELGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           + +  P + + + + +SG +D Y + M    D  + + ++  P +      I++  I SY
Sbjct: 289 LHVYTPIMANVEFYKQSGHWDHYHENMYPPMDLGDGEMLVLRPMNCPHHMMIYKKDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F ++ +  R E      G+ R RE  + DA+ F + P+  K  + ++    + +
Sbjct: 349 RELPIRFAELGMMHRYEKSGALSGLQRVREMTLNDAHIF-VRPDQIKEEFMRVVHLIIEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D    + +   D M     SE  +  D   
Sbjct: 408 YKDFKITDYSFRLSYR--------------DPENKEKYFDDDQMWQRAESELKNVMD--E 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +    ++     A      + ++  ++   + +S   ++    F    ++      T+ G
Sbjct: 452 MKLPYKEAIGEAAFYGPKLDIQVRTAMGMEETLSTVQLD----FLLPERF----DLTYVG 503

Query: 305 ADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DGK+    V +    +  M    A +   + G   +W   +AP ++ LI +     + +
Sbjct: 504 EDGKNNHRPVVIHRGVVSTMERFVAYLIEEYKGSFPLW---LAPVQLKLIPVNL--DLHK 558

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    ++ +L K+G  V  D   E++G +   A  L  P Q++VG   ++   +  +   
Sbjct: 559 DYVMNLHEQLKKLGFRVESDFRNEKLGYKIREAQTLKIPYQLVVGDNEMNTHSITYRPYG 618

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +  + ++S++  I   + R  N 
Sbjct: 619 SEKQINISIDGFIKLLNERMINK 641


>gi|256005276|ref|ZP_05430242.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|255990712|gb|EEU00828.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|316939553|gb|ADU73587.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 572

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 112/250 (44%), Positives = 154/250 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++   +         +     
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSGSQEFMVKSAVGESRIAYCEACGYAANDEKAECVP 240

Query: 241 DIISLNSIVE 250
           +    +    
Sbjct: 241 EKCCDDKECC 250



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSA 300
               ++            D+   K  D+ P+         GIEVGHIF  GTKYS  +  
Sbjct: 366 FHYKNVNINRDFKPKYVKDIRTIKEGDACPKCGAPVKVEFGIEVGHIFKLGTKYSEALDC 425

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +    GK+  + MG YGIG  R +AAVIE ++D  GIIWP S+AP+ + +I +   D V
Sbjct: 426 IYLDETGKERPMIMGCYGIGINRSMAAVIEQNNDENGIIWPISIAPYHVIVIPVNTTDSV 485

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIY +L ++G +V  DD  E+ G +F  ADL+G P+++ VG +   +  VE K 
Sbjct: 486 QMELAEKIYTQLGEMGIEVLLDDRDERPGVKFKDADLIGIPIRITVGKR-AGEGIVEYKL 544

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R       +  EE I  A    + 
Sbjct: 545 RREKDFAAIPYEEAIAKAKEEVAE 568


>gi|297626631|ref|YP_003688394.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922396|emb|CBL56968.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 588

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 119/389 (30%), Positives = 175/389 (44%), Gaps = 27/389 (6%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK F+  L+++P  AEI SH+ ++R G I + + GIYSWLPLG K L  V  I+REE +
Sbjct: 1   MSKLFVRTLRDDPAAAEIPSHRFLVRAGYIRRVAPGIYSWLPLGLKVLQRVENIVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+ +P L   + +  S R+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  AMGGQEVLLPALLPREPYEISNRWAEYGPNLFRLVDRKGADMLLGPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+  EG   SY K   +Y+
Sbjct: 121 SSYKDLPVILYQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDEGLDASYLKHRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLG + + ++A +G +GG  S EF+ L++ GE     S       + +      D 
Sbjct: 181 RIFDRLGFEYVIVKANAGAMGGSASEEFLALSENGEDTFVRSAGGYAANVEAVTVPVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                  +        L E      R  + G         ++      
Sbjct: 241 IDFTDAPPARVVDTPDVPTIDTLVAL--LNERYPREDRAWQAGDTLK-----NVVFMTV- 292

Query: 303 KGADGKDHYVQMGSYG---IGAMRVVAA----VIESSHDGKGIIWPDSVAPFKISLINIK 355
              DG    + +G  G   +   R+  A    VIE   D     +P  V  +   +  + 
Sbjct: 293 -APDGTRAPLVIGLPGDRDVDPDRLAVAVEPSVIEPFEDEDFKRYPGLVKGY---IGPVL 348

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
               +  +            G     D  
Sbjct: 349 DGAALLGEKA--------SSGVRYLLDPR 369



 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 4/177 (2%)

Query: 264 NEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           + +  D  P+N       RG+E+GHIF  G KY+  +       +GK   V MGSYGIG 
Sbjct: 406 DVREGDPAPDNSGPLTLARGVEMGHIFQLGRKYAESLDLKVLDKNGKLVTVTMGSYGIGV 465

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R V  + ES+ D KG+ WP  VAPF++ ++      +   +A  +I  +L   G  V  
Sbjct: 466 SRAVGMIAESTCDDKGLCWPAEVAPFQVQIVATGKGGE-ILEAATRIAEQLDAAGVRVLL 524

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           DD     G +F  A+LLG P  ++VG + ++D  VE++ R TG + ++S+EE ++  
Sbjct: 525 DDRKASPGVKFTDAELLGMPTSLVVG-RGLADGVVELRDRKTGSKREVSVEEAVDEV 580


>gi|114328278|ref|YP_745435.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|122326764|sp|Q0BRP0|SYT_GRABC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114316452|gb|ABI62512.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 146/444 (32%), Gaps = 50/444 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L  L+E    AE   H+ + +      I + + G   W   G +    +   +R  Q  
Sbjct: 232 YLHQLEE----AERRDHRRLGKEMDLFHIQEEAVGSIFWHKKGWRLYRALENYMRRRQIE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHI 122
            G  E+  P L    LW +SG +D Y + M      +++      P +      IFR  +
Sbjct: 288 AGYEEVRTPQLVDRSLWEDSGHWDKYREHMFIATVEDEEKTLALKPMNCPCHVQIFRHGL 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +     R E      G+MR R F   DA+ F + PE             
Sbjct: 348 RSYKELPLRMAEFGACHRYEPSGALHGIMRVRSFTQDDAHIFCM-PEQIAKETADFVAML 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++  LG  S  ++    P       E    A+    +            P E   +  
Sbjct: 407 ASVYRDLGFDSFRVKFADRPESRAGKDEDWDRAEHELREACRLAGVEYELNPGEGAFYGP 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            +                               +    R  + G        Y LP  ++
Sbjct: 467 KLEF---------------------------VLRDAIGRDWQCGT---LQVDYVLPERLN 496

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG +   V +    +G+      ++   + G+  +W           + +    
Sbjct: 497 AEYVAEDGARRRPVMLHRAILGSFERFIGILIEQYAGRFPLWLAP------VPVVVAPIV 550

Query: 359 QVCRDACEKIYARLSKVGCD-VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   ++   L + G      D   E+I ++     L   P+ ++VG +     +V 
Sbjct: 551 SDANAYAMEVVTALKRAGVTWAEADLRNEKINAKIREHSLAHVPVILVVGRREAEQRQVA 610

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++   +  ++ M+L+E I+  +  
Sbjct: 611 LRRLGSQEQQVMALDEAISALATE 634


>gi|294625222|ref|ZP_06703863.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600496|gb|EFF44592.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 621

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 281



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 460 RGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGII 519

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ FA  +LL
Sbjct: 520 WPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMFADMELL 579

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R     E +    + +   H
Sbjct: 580 GIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRLGH 621


>gi|299529723|ref|ZP_07043160.1| prolyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298722586|gb|EFI63506.1| prolyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 580

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE  +    +     
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYCPNSDYAA 231



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGT 292
              + +D         +     A  +D+ N    D  P+   +    RGIE+GH+FY GT
Sbjct: 368 CGANEEDFHITGVNFGRDLPEPAVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGT 427

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M ATF G +GK  + +MG YGIG  R+ AA +E +HD +G+IWPD++APF + + 
Sbjct: 428 KYSKAMEATFLGDNGKPQHFEMGCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVIC 487

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I     +  +   EK+Y  L  +G DV  DD  E+ G+  A  +L+G P +V++G + +
Sbjct: 488 PIGMGRSEAVKTEAEKLYGELLALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGL 547

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  VE + R       ++  EV+ +   R 
Sbjct: 548 KEGVVEYQQRRDTEATKLATNEVLAHLKSRL 578


>gi|78212243|ref|YP_381022.1| prolyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|114152271|sp|Q3ALR5|SYP_SYNSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78196702|gb|ABB34467.1| prolyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 593

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 110/234 (47%), Positives = 146/234 (62%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LPL  + L  + A++REE
Sbjct: 1   MRVSRLLLVTLRDVPAEAEITSHQLLLRAGYIRRVGSGIYAYLPLMWRVLQKITAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA E  +P L  A+LW +SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRAGAQETLLPQLHPAELWQKSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  +    + +Y  M
Sbjct: 121 AGELLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRETYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D     
Sbjct: 181 DQAYRRIFERCGLDAVPVDADSGAIGGAASQEFMVTADAGEDLILISDDGQYAA 234



 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 105/241 (43%), Gaps = 5/241 (2%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY-AA 258
           G IG DLS + +  A T +       D     + S     +                   
Sbjct: 346 GSIGPDLSDDVLKGAKTWQPTFLRLADETASELGSFICGANQPDLHRFNTSWTAIEQKPT 405

Query: 259 TSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           T D+ N +  D    N   +    RGIEVGHIF  G KYS  M + F   +GK     MG
Sbjct: 406 TLDLRNARAGDVCQHNLESRLTEKRGIEVGHIFQLGRKYSEAMESGFTNENGKTEPFWMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+  A +E  HD  GI WP ++APF+  ++     D       E +YA L   
Sbjct: 466 CYGIGVSRLAQAAVEQHHDDSGICWPTAIAPFEAIVVVANIQDDTQGQLGEALYAELQAA 525

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DV  DD  E+ G +F  ADL+G P +++VG +  S+  VE+  R +     +   E +
Sbjct: 526 DVDVLLDDRKERAGVKFKDADLIGIPWRIVVG-RDASEGIVELVRRSSREVRKLPHAEAV 584

Query: 436 N 436
           +
Sbjct: 585 S 585


>gi|293376470|ref|ZP_06622699.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325842051|ref|ZP_08167588.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
 gi|292644892|gb|EFF62973.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325489773|gb|EGC92129.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 645

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 177/442 (40%), Gaps = 34/442 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L IL+E   RD +    +L L T       +G+  WLP G K    +   I E +   G 
Sbjct: 230 LRILEERKERDHKKLGRELELFT-FSPLVGQGLPIWLPNGMKVRQQIERYITELEEDYGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             ++ P + S DL+  SG +  Y ++M    + +++ ++  P        ++++ ++SYR
Sbjct: 289 QHVATPVMGSVDLYRTSGHWAHYQEDMFVPMEMDNEELVLRPMSCPHHMMVYKTKLRSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  + +  ++ R E      G+ R R   + D++ F + P+  K  +++      R+ 
Sbjct: 349 DLPIRYAEQVIQHRFEASGALTGLERVRAMTLTDSHLF-VRPDQIKEEFSRCLELIHRVI 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G++    R                  D    + +   D M     S   +   +I  
Sbjct: 408 KDFGVEINYYRLSLR--------------DPENKEKYFDDDQMWENAESMLRE--TLIEN 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N    +     A      + ++  +L  +  +S   ++    F    ++      T+   
Sbjct: 452 NIPFIEAEGEAAFYGPKLDIQIKTALGHDITMSTIQLD----FLLPERF----DLTYVSE 503

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            G+    V M    IG      A +  ++ G   +W   +AP ++++I +   +Q   + 
Sbjct: 504 TGEKVRPVVMHRGLIGTYERFMAYLIETYKGAFPLW---LAPTQVTVIPVN--NQYHLEY 558

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++   L K    +  D+  E++G +   +     P+ +++G K V++++V  +     
Sbjct: 559 AKEVAKELRKYRVRLEIDEREEKMGYKIRESQTKKIPMSIVLGDKEVANNEVTFRRFGEQ 618

Query: 425 IREDMSLEEVINYASHRFSNNR 446
             + + L+E +++     +  +
Sbjct: 619 KTQTLPLKEFVHFLVEEIAERK 640


>gi|87124051|ref|ZP_01079901.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86168620|gb|EAQ69877.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 612

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 154/441 (34%), Gaps = 38/441 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRLGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYDLLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M      +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADIGLWKTSGHLDFYSESMFGPMQVDEREYQLKPMNCPFHVLTYASRLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L PE       ++      I     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILRILNLTETILSAFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++  +   + P           LA  G  +    K +                      
Sbjct: 381 FRNYEINLSTRPEKSIGDDAVWDLATQGLIEALERKGWAYKVDAGGG------------- 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
                  A      + K+ D++    + S   ++    F    +++L     +  ADG K
Sbjct: 428 -------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERFAL----DYVAADGSK 472

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++     ++  ++ G    W   +AP +I L+ +   D+V  D  +++
Sbjct: 473 QRPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT--DEVLAD-AQQL 526

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G     D  GE++G      + +  PL  ++G+K      V ++ R  G    
Sbjct: 527 SDQLRAAGIRATVDRSGERLGKLIRTGEQMKIPLLAVIGAKEAEQGSVSLRSRRDGDLGS 586

Query: 429 MSLEEVINYASHRFSNNRPVL 449
           ++ + +I  AS         L
Sbjct: 587 VNRKALIEAASQANQERLASL 607


>gi|75908999|ref|YP_323295.1| threonyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|75702724|gb|ABA22400.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Anabaena
           variabilis ATCC 29413]
          Length = 615

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 165/445 (37%), Gaps = 45/445 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   +++EQ + G + + 
Sbjct: 203 EEALRRDHRKLGKELGLFI-FSEQVGPGLPLWTPKGTLLRSTLEQFLQQEQLKRGYLPVV 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND------KAMIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   ++      +  +  P +      I++S ++S
Sbjct: 262 TPHIARVDLFKTSGHWQKYKEDMFPLMAEDEAAAAIEQGFVLKPMNCPFHIQIYKSELRS 321

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F +TPE     +  +    L 
Sbjct: 322 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDSEFLNVVDLILS 380

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  L LK+   R        D       + +  E  +  +                 + 
Sbjct: 381 VFKSLQLKNFKARLSFRDPASDKYIGSDEVWNKAEGAIRRA-----------------VE 423

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
            L     +     A      +    D+         R  ++G +      Y+LP      
Sbjct: 424 QLGMEHFEGIGEAAFYGPKLDFIFSDA-------LEREWQLGTV---QVDYNLPERFDLE 473

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V +     G++  +  ++   + G   +W   +AP +  L+ +    + 
Sbjct: 474 YVAEDGTRKRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPVQARLLPVG---EA 527

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + + A+L  +G     D  G+++G     A+    P+  +VG+K V  + + I+ 
Sbjct: 528 QLDFTKDVVAKLRSLGIRAEVDTSGDRLGKLIRNAEKDKIPVMGVVGAKEVETNSLSIRT 587

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G    + ++EV+       +N 
Sbjct: 588 RASGELGAIPVDEVVQKMKDAIANY 612


>gi|47479652|gb|AAH69346.1| TARSL2 protein [Homo sapiens]
 gi|47480952|gb|AAH69811.1| TARSL2 protein [Homo sapiens]
          Length = 466

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 154/437 (35%), Gaps = 44/437 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 55  EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 114

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 115 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 173

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 174 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 232

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 233 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 280

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 281 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 323

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 324 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 377

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   
Sbjct: 378 LQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNK 437

Query: 425 IREDMSLEEVINYASHR 441
           I  ++ +   I+   + 
Sbjct: 438 IHGEILVTSAIDKLKNL 454


>gi|17232215|ref|NP_488763.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17133860|dbj|BAB76422.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 612

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 161/444 (36%), Gaps = 40/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I + + G +  W P G      +    R+    +
Sbjct: 206 YLKQREEALRRDHRKLGQELNLFS--IQEEAGGGLVFWHPKGASIRYIIEDYWRKCHLES 263

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG +D Y + M    +  ++A    P +       ++  + S
Sbjct: 264 GYQLLYTPHVANLDLWKTSGHFDFYQENMFDSMEVENQAYQIKPMNCPFHVLTYKHQLHS 323

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G+MR R F   DA+ F L P         +      
Sbjct: 324 YRELPLRWAELGTVYRYERSGALHGLMRVRGFTQDDAHIFCL-PHQIADEILGVLNLTEH 382

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K+  +   + P     ++E   LA +   Q   +K +                
Sbjct: 383 ILSDFGFKNYEVNLSTRPDKSVGNNEVWELATSALRQALDAKGWNYIVDEGGG------- 435

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++       + 
Sbjct: 436 -------------AFYGPKIDIKIQDAIGRLWQCSTIQVD----FNLPERF----DMEYI 474

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +   + +     G++     ++  ++ G   +W   +AP +I L+ +       R
Sbjct: 475 ATDGSRQRPIMIHRAIFGSLERFFGILIENYAGDFPLW---LAPVQIRLLPV---SDDVR 528

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E +   L K G  V  D  GE++G Q   A+L   P+  +VG K V +  + ++ R 
Sbjct: 529 GYTESVAIALQKDGFRVEIDISGERLGKQIRTAELEKIPVVGVVGKKEVENQNLSVRTRA 588

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
            G    ++L ++ N+        +
Sbjct: 589 NGDLGAINLNDLTNHLRETIIAKK 612


>gi|320104617|ref|YP_004180208.1| prolyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
 gi|319751899|gb|ADV63659.1| prolyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
          Length = 595

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 150/224 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +P L+E P  A   SH+L+L+ GMI Q   G Y++LPLG + L+ + AI+R+ 
Sbjct: 1   MRWSKALIPTLKEAPAGAVAPSHQLLLKAGMIRQLGSGAYTYLPLGWRVLNKIVAIVRKG 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM +P LQ  +LW E+GRY ++G  +++L    D+ M  GPTHEEV+TD+ R 
Sbjct: 61  MDDAGAQEMLMPALQPVELWKETGRYQTFGDLLMQLKVGGDQTMALGPTHEEVVTDLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP T YQIQ KFRDE RPRFGV+R+REFLMKDAYSFD   +    SY+ M+ +
Sbjct: 121 LIKSYRQLPMTLYQIQTKFRDEPRPRFGVLRTREFLMKDAYSFDANLDQLNQSYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF   G+  + + AESGPIGGD SHEF+V A  GE  +   
Sbjct: 181 YQRIFDECGIPYVVVEAESGPIGGDSSHEFMVPASIGEDVILQC 224



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 2/172 (1%)

Query: 263 HNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P + +     RGIEVGH+F  GTKYS  M ATF    G    + MG YGIG
Sbjct: 390 RNAVAGDPCPLSGQPMIETRGIEVGHVFKLGTKYSKAMGATFLDETGTAQDIIMGCYGIG 449

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++AA +E+ HD  GI+WP ++AP+++ LI +K  +       E +   L+  G DV 
Sbjct: 450 INRILAAAVEALHDAHGIVWPLAIAPYEVILIPLKVSNPDLMAVVETLERELAAAGIDVL 509

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            DD   Q G +F  ADL+G PL+V++G + + + K+E+K R     + + +E
Sbjct: 510 TDDRDHQPGFKFKDADLIGIPLRVVIGERGLKEGKLELKWRHEKEADSIPVE 561


>gi|121603656|ref|YP_980985.1| prolyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|152112939|sp|A1VK86|SYP_POLNA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120592625|gb|ABM36064.1| prolyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 581

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/224 (52%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHQLMMRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIEMS+P +Q A+LW E+GR+++ G E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAIEMSMPVIQPAELWQETGRFEAMGPELLRIKDRHGRDFVVQPTSEEVVTDVMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 DIRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQTAAKVSYQNMAEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 72/212 (33%), Positives = 110/212 (51%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              +  D         +        +D+ N    D  P+ K      RGIEVGH+FY GT
Sbjct: 369 CGANEADFHITGVNWSRDLPEPDLIADIRNVVAGDPSPDGKGLLAIERGIEVGHVFYLGT 428

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF G +GK  +++MG YGIG  R+ AA IE +HD +GIIWPD++APF + + 
Sbjct: 429 KYSRAMNATFLGENGKPQFLEMGCYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVIC 488

Query: 353 NIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I        + A +K+Y+ L   G DV  DD GE+ G+ FA  +L+G P +V +G + +
Sbjct: 489 PITPERFPDVKAAADKLYSELLGAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGL 548

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +  +E +HR       +      ++   + +
Sbjct: 549 KEGHIEYQHRRDTAASKVEAAAAFDFLKGKLA 580


>gi|220931402|ref|YP_002508310.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|219992712|gb|ACL69315.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 646

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 167/450 (37%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIRE 59
           ++ +  L +L+E   RD      +L L   M  +   +G+    P G K +  +   + +
Sbjct: 227 KQLEEHLKMLEEAKKRDHNKLGRELDLF--MTEESIGQGLPLLKPKGAKVVQILQRFVED 284

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDI 117
           E+ + G      P +  +DL+  SG +D Y ++M  L D   +D+ +   P        I
Sbjct: 285 EEEKRGYQLTKTPYMAKSDLYKISGHWDHYKEDMFILGDEEKDDEVLALRPMTCPFQFMI 344

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + S ++SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  
Sbjct: 345 YNSKLRSYRDLPLRYSETSTLFRNEASGEMHGLIRVRQFTISEGHII-CTPEQLEEEFRG 403

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +      +   LG++             D         D    + +            + 
Sbjct: 404 VVNLINYMMETLGIE-------------DDIWYRFSKWDPDNREKYIDNPTAWEESQDKM 450

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +  D ++++ +        A      + +  +   +   +    I+    F    ++  
Sbjct: 451 KNILDKLNIDYVEA--EGEAAFYGPKLDIQFRNVHGKEDTIITVQID----FALPERF-- 502

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+   D K      +    +G      A++   + G    W   +AP ++ +I + 
Sbjct: 503 --DMTYIDKDNKKKRPYVIHRTSVGCYERTLAMLIEKYAGAFPTW---LAPVQVEIIPVS 557

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   ++   L + G  V  DD  E++G +   A +   P  +IVG++ V +  
Sbjct: 558 DD---QVDYAYEVKGILKEAGIRVEVDDTNEKLGYKIRQAQMEKIPYMLIVGNREVENRT 614

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R  G    +S++E            
Sbjct: 615 VSVRDRKEGDLGAISIKEFKEKIVREVEEK 644


>gi|212550461|ref|YP_002308778.1| threonyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229470721|sp|B6YQ95|SYT_AZOPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212548699|dbj|BAG83367.1| threonyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 648

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 157/447 (35%), Gaps = 40/447 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y   + +   RD      ++ L T   H+  +G+  WLP G +    +   ++  Q 
Sbjct: 229 LSEYLALMEKAKKRDHRRIGKEMELFT-FSHKVGRGLPLWLPKGTQLRLRLEDFLKRIQK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P + +  L++ SG Y  YGK+  +        +  +  P +     +I+++
Sbjct: 288 KYGYQQVITPHIGNKTLYIASGHYAKYGKDSFQPIHTPELGEEFLLKPMNCPHHCEIYKA 347

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SY+ LP    +    +R E      G+ R R F   DA+ F  +PE  K    K+  
Sbjct: 348 FLRSYKELPLRLAEFGTVYRYERSGELQGLTRVRGFTQDDAHIF-CSPEQVKEELIKVID 406

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               IF  L      ++                  D      +   +             
Sbjct: 407 IVRVIFCALNFNDYEVQISLR--------------DLNNRIKYIGSEENWKNSEG---AI 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            ++     I  +     AA      +         K    R  ++G I      Y+LP  
Sbjct: 450 IEVCQEKKIKAKIKLGEAAFYGPKLDF------MVKDALGRNWQLGTI---QVDYNLPER 500

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + GAD + H  V +     G+M    AV+     GK  +W  S    ++ ++ +  
Sbjct: 501 FELEYVGADNQKHRPVMIHRAPFGSMERFVAVMIEHTGGKFPLWLVS---DQVVILPV-- 555

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      E+I     K    V  D   E++G +    +L   P  +I+G K   +S++
Sbjct: 556 -SENYNQYAEEIAKEFHKRDIRVTIDKRNEKVGRKIRDNELKKIPYLLIIGEKERRNSEI 614

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++         M + E   +      
Sbjct: 615 SVRKHGKENIGIMKVTEFAEFLKKEVE 641


>gi|190572717|ref|YP_001970562.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|226701342|sp|B2FMR5|SYP_STRMK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|190010639|emb|CAQ44248.1| putative prolyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 567

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQVFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQ+Q KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQVQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVFS 224



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 96/194 (49%), Gaps = 2/194 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +      P    +D+ N +  D +L   +   ARGIEVGH+F  G KY+  + AT    +
Sbjct: 373 VNWGRDLPEPEVADIRNVRAGDRALDGGELKIARGIEVGHVFQLGRKYAEALDATVLDEN 432

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   + MG YGIG  RVVAA IE +HD  GIIWPD++AP+++ +  I    D    DA 
Sbjct: 433 GKAAVMAMGCYGIGISRVVAAAIEQNHDDAGIIWPDAMAPWQVVVCVINPKGDAAVADAA 492

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +   L   G D   DD G + G+ FA  +L+G P +V+V  + +     E + R    
Sbjct: 493 ASLLQELRDAGLDAALDDRGLRPGAMFADMELIGIPHRVVVSERGLGAGTYEYRSRRASE 552

Query: 426 REDMSLEEVINYAS 439
            E +    ++    
Sbjct: 553 AESLDKATLLQRLQ 566


>gi|187251094|ref|YP_001875576.1| prolyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|226701286|sp|B2KCB2|SYP_ELUMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|186971254|gb|ACC98239.1| Prolyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 573

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 113/228 (49%), Positives = 149/228 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++Y+LP L+E P+DA+  S KLMLR G+I + + GIY WLPLG K L  V  I+REE
Sbjct: 1   MKLTQYYLPTLKEAPKDADTISAKLMLRAGLIRKTASGIYEWLPLGLKVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q  +LW ESGR+  YGKE+LR+ DR      + PT EEV+TD+ R 
Sbjct: 61  MDAAGAHEVWLPLIQPKELWEESGRWTYYGKELLRIKDRKGAEFCFAPTAEEVITDVVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ   KFRDE+RPRFGVMR+REF MKDAYSF  T E     Y K F +
Sbjct: 121 DVTSYKQLPVALYQFASKFRDEIRPRFGVMRAREFYMKDAYSFHATEESINEWYLKFFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y ++  R G K   + A++G IGG+ SHEF+VLADTGE ++       
Sbjct: 181 YKKVCTRCGFKFKAVEADTGAIGGNFSHEFMVLADTGENEIADCDCGY 228



 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 92/177 (51%), Gaps = 1/177 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K    RGIEVGH F  GTKYS  M A F   + K H   MG YGIG  R+
Sbjct: 392 EGDLCGKCGKKFNFTRGIEVGHTFKLGTKYSQSMKAEFLDENQKSHPFLMGCYGIGISRI 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDD 383
           VAA IE SHD  GIIWP  +APF I L++I    +   ++  + IY +L++ G +V  DD
Sbjct: 452 VAAAIEQSHDENGIIWPAPLAPFDIYLVSIDTDINPKVKEETDSIYNQLTQAGLNVLLDD 511

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             E+ G +F  ADL+G P ++++ S+ V   + E K R +       L ++      
Sbjct: 512 RNERPGIKFKDADLIGLPHRIVISSRTVETGEYEYKQRTSKEAIRRKLADISEQIKE 568


>gi|162138530|ref|YP_365423.2| prolyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|114152278|sp|Q3BP90|SYP_XANC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 224



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 403 RGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGII 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ FA  +LL
Sbjct: 463 WPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMFADMELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R     E +    + +   H
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARTADAAESLDKAALFSRLGH 564


>gi|325928567|ref|ZP_08189755.1| prolyl-tRNA synthetase, family II [Xanthomonas perforans 91-118]
 gi|325541106|gb|EGD12660.1| prolyl-tRNA synthetase, family II [Xanthomonas perforans 91-118]
          Length = 564

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 224



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 403 RGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGII 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ FA  +LL
Sbjct: 463 WPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMFADMELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R     E +    + +  +H
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARTADAAESLDKAALFSRLAH 564


>gi|110833600|ref|YP_692459.1| prolyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110646711|emb|CAL16187.1| Prolyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 566

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 111/219 (50%), Positives = 149/219 (68%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE +R GA
Sbjct: 1   MLATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREEMDRAGA 60

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+ + SY+
Sbjct: 61  QEVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRNELHSYK 120

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +Y  IF 
Sbjct: 121 QLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRAYCAIFD 180

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           RLGL   P+ A++G IGG  SHEF VLA++GE  +  S 
Sbjct: 181 RLGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFSD 219



 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 4/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+        RGIEVGHIF  GTKYS  +
Sbjct: 358 DGKHYFNINWERDVALPQIADLRNVVDGDPSPDGSGTLTIKRGIEVGHIFQLGTKYSEAL 417

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
            AT    +GK   + MG YGIG  RVVAA IE ++D +GIIWP+++APF+++L+ +    
Sbjct: 418 GATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGIIWPEAIAPFQVALVPVNIKK 477

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
               R+  EK+YA L+ +G +V +DD   E++G + A  +LLG P ++++  + + +  +
Sbjct: 478 SPRERELAEKLYAELTAMGIEVLFDDREKERLGVKLADTELLGIPHRIVIAERGMDNGVL 537

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
           E K R    + +++++E++ +   + 
Sbjct: 538 EYKGRRDADKTEVAMDEIVAFLKEKM 563


>gi|260436778|ref|ZP_05790748.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260414652|gb|EEX07948.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 597

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 110/237 (46%), Positives = 146/237 (61%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LPL  + L  + A++REE
Sbjct: 5   MRVSRLLLVTLRDIPAEAEITSHQLLLRAGYIRRVGSGIYAYLPLMWRVLQKITAVVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA E  +P L  A+LW +SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 65  MNRAGAQETLLPQLHPAELWQKSGRWQGYTAGEGIMFHLEDRQGRELGIGPTHEEVITSL 124

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  +    + +Y  M
Sbjct: 125 AGELLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRETYGAM 184

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D        
Sbjct: 185 DQAYRRIFERCGLDAVPVDADSGAIGGAASQEFMVTADAGEDLILISDDGQYAANQE 241



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 106/241 (43%), Gaps = 5/241 (2%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IG DLS + +  A T E       D     + S     +                  T
Sbjct: 350 GSIGPDLSDDVLQGAKTWEPTFLRLADATASELGSFICGANKPDLHRFNTSWTAIGQKPT 409

Query: 260 S----DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                +     +    P+++    RGIEVGHIF  G KYS  M + F   +GK     MG
Sbjct: 410 RLDLRNARAGDVCQHNPKSRLTEKRGIEVGHIFQLGRKYSQAMESRFTNENGKTEPFWMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+  A +E  HD  GI WP ++APF+  ++     D +     E +YA L   
Sbjct: 470 CYGIGVSRLAQAAVEQHHDDSGICWPTAIAPFEAIVVVANIQDDIQAQLGEALYAELQAA 529

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +F  ADL+G P +++VG +  S+  VE+  R +   + +   E +
Sbjct: 530 GVDVLLDDRKERAGVKFKDADLIGIPWRIVVG-RDASEGTVELVCRSSREVQKLPHAEAV 588

Query: 436 N 436
            
Sbjct: 589 T 589


>gi|301089746|ref|XP_002895146.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262101719|gb|EEY59771.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 744

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 145/430 (33%), Gaps = 37/430 (8%)

Query: 16  RDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A    H+ +         H  S G   WLP G      +   IRE+    G  E+  P
Sbjct: 340 AEAAKRDHRRLGVSEELFFFHSLSPGSGFWLPHGSAIYFKLLKFIREQYRARGYTEIITP 399

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + + +LW  SG    Y + M    D   +     P +    + +F    +SYR LP   
Sbjct: 400 NIYNMELWNISGHAQHYKENMFVF-DVEGQEYALKPMNCPAASLMFDFRQRSYRELPIRL 458

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+EL     G+ R R F   DA+ F    +  K            ++   G++
Sbjct: 459 ADCGVLHRNELSGALTGLTRVRRFQQDDAHIFCRD-DQIKKEVLDFLTFMKYVYDVFGIE 517

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P       E    A+T   Q                    D          
Sbjct: 518 F-NLELSTRPEKAMGELEQWERAETQLAQAL------------------DEFVGAGKWVV 558

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    +++L        A+     
Sbjct: 559 NPGDGAFYGPKIDIMITDALKRQHQCATVQLD----FQLPIRFNLKYRTD--DAENFKRP 612

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +     G++    AV+   + GK   W   ++P +I ++ + A      D   ++   
Sbjct: 613 VIIHRAIYGSLERFVAVLVEHYAGKFPFW---LSPRQILIVTVGA---AFVDYGYEVKDA 666

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G DV  DD G+ +  +     +  +   ++VG+       V I+ R   +R   +L
Sbjct: 667 LFRAGFDVEIDDSGKTLNKKIREGQMAHYNFILVVGAHEKETRSVNIRTRDNKVRGTKTL 726

Query: 432 EEVINYASHR 441
           EE I+     
Sbjct: 727 EEAISMFKDL 736


>gi|150388509|ref|YP_001318558.1| prolyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|166980095|sp|A6TL31|SYP_ALKMQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149948371|gb|ABR46899.1| prolyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 570

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/246 (45%), Positives = 156/246 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E P +AE+ SH+L+LR GMI +   G+YS+LPLG + L  V  I+REE
Sbjct: 1   MRMSKLYMPTLREVPSEAELPSHQLLLRAGMIRKLVAGVYSYLPLGYRTLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E  +  LQ  +LW  +GR+ + G EM+RL DR+++    GPTHEEV+TD+ ++
Sbjct: 61  MDRAGAQEALMSALQPKELWEATGRWQAIGPEMMRLKDRHNREFCLGPTHEEVITDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPRFG+MRSREF+MKDAYSFD   EG K SY  M+  
Sbjct: 121 ELKSYKQLPLNLYQIQTKYRDEKRPRFGLMRSREFIMKDAYSFDKDEEGMKKSYEDMWKG 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F R  LK   +  ++G +G   SHEF+ ++  GE+ V             + T   
Sbjct: 181 YERVFDRCELKYKVVEGDAGAMGDSESHEFMAMSQYGESLVAYCDHCDYAATDEKATVVY 240

Query: 241 DIISLN 246
           D+   +
Sbjct: 241 DVTEKD 246



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 1/180 (0%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E              RGIEVG+IF    KYS  ++ATF   +GK+ Y  MGSYGIG  R
Sbjct: 390 QEGDLCPTCGETLKLDRGIEVGNIFQLDMKYSKGLNATFLDENGKEQYFYMGSYGIGIGR 449

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +AAVIE  HD KGI WP ++AP+++ +  +  +    R+  EKIY++L   G +V  DD
Sbjct: 450 TMAAVIEQYHDEKGIKWPLALAPYQVVVTIVNPNKDEQRELGEKIYSKLLSKGVEVLLDD 509

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E  G +F  A+L+G P++V+ G K   ++ VE   R T  ++++  +EV+     +  
Sbjct: 510 RKESPGVKFKDAELIGIPIRVVAG-KNAGENIVEFALRATDEKKEVEADEVVEMVMDQLK 568


>gi|164657235|ref|XP_001729744.1| hypothetical protein MGL_3288 [Malassezia globosa CBS 7966]
 gi|159103637|gb|EDP42530.1| hypothetical protein MGL_3288 [Malassezia globosa CBS 7966]
          Length = 635

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 158/451 (35%), Gaps = 46/451 (10%)

Query: 11  LQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            +    +A    H+ + R     M H  S G   WLP G +  + +   I+ E  + G  
Sbjct: 213 YKHFLAEAAKRDHRRIGREQELFMFHDLSPGSCFWLPHGARIYNTLQDFIKSEYRKRGFD 272

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P + ++ LW  SG + +Y  +M  L+  + +     P +      +F S  +SY+ 
Sbjct: 273 EVISPNMYNSKLWETSGHWANYKDDMFVLSV-DKETFALKPMNCPGHCLMFASRDRSYKE 331

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  F    +  R+E      G+ R R F+  DA+ F       +      F     ++ 
Sbjct: 332 LPLRFADFGVIHRNEASGALSGLTRVRRFVQDDAHIF-CRASQIEDEMINCFDFLQTVYG 390

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G     M   + P       E    A+              + +   +  F       
Sbjct: 391 HFGFSF-KMELSTRPEKHLGDVETWDAAEKRLASALDRFVPGRWELNPGDGAFYGPKIDI 449

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +I                    D++    + +   ++    F    +++L       GA+
Sbjct: 450 TIS-------------------DAMRREHQCATIQLD----FQLPQRFNLEYKTPQGGAE 486

Query: 307 GKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              H    V +    +G++    A++  +  GK   WP  ++P ++ ++ +    Q   +
Sbjct: 487 ADKHTERPVMIHRAVVGSLERFIAILIENFAGK---WPFWLSPRQVLVVPVT---QSVYE 540

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++ A L   G     D     +  +    +L  +    +VG +      V +++R  
Sbjct: 541 YAEEVRALLWDRGFFADADLSDNTLNKKIRNGELAQYNFVFVVGHEEKETRSVNVRNRDN 600

Query: 424 ------GIREDMSLEEVINYASHRFSNNRPV 448
                 G  + + L++++     +   +R +
Sbjct: 601 DPKVMKGKTDTIKLDDILAKL-QKLKESRAI 630


>gi|319649526|ref|ZP_08003682.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317398688|gb|EFV79370.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 567

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE  SH+L+LR G I Q++ GIYS++PL +K L  V AIIREE
Sbjct: 1   MKQSMTLIPTLKEVPADAETRSHQLLLRAGFIRQNASGIYSYMPLAKKVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P LQ A+LW ESGR+ +YG E++R+ DR+++    G THEEV+T + R 
Sbjct: 61  MDNAGAVELLMPALQQAELWQESGRWYTYGPELMRMKDRHEREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF    E     Y+K+F +
Sbjct: 121 AVKSYKKLPLALYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHSNQESLDEMYDKLFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F R GL    + A+SG +GG  +HEF+VL++ GE  +  S       
Sbjct: 181 YSNVFRRCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDTSEYAA 231



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 3/224 (1%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-- 279
             +   ++  +       ++ I   +            +D+   +  D  P+ +      
Sbjct: 343 IIADHAVEAIVNGVCGANEEGIHYVNANPDRDFYVTRYADLRFIQEGDPSPDGQGTIQFA 402

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GT+YS  M ATF   +G+   + MG YGIG  R +AAV E   D  G I
Sbjct: 403 KGIEVGHIFKLGTRYSEAMEATFLDENGRTQPMIMGCYGIGVSRTMAAVAEQFSDENGFI 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+APF + LI I   D+      E++Y  L +   DV  DD  E+ G +FA +DL+G
Sbjct: 463 WPRSLAPFDLHLIPINMKDETQSAVAEELYTMLKRDRYDVLMDDRQERPGVKFADSDLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P+++ VG K  S+  VE+K R TG  +++  +++ +  +   S
Sbjct: 523 LPIRITVGKK-ASEGIVEVKVRKTGEMQEIHKDQLADKIAEMMS 565


>gi|148284343|ref|YP_001248433.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|166225471|sp|A5CD12|SYT_ORITB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146739782|emb|CAM79649.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 648

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 153/453 (33%), Gaps = 57/453 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L        ++G+  W   G      +   I  +  R G
Sbjct: 232 YLHRLSEAQKRDHRKLGRELELF--HFQDEAQGMPFWHDKGWTIFKIIKNYISCQIQRAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL------ADRN--------DKAMIYGPTHE 111
            IE++ P + S  LW +SG ++ + + M  L       D N          A+   P + 
Sbjct: 290 YIEVNTPMVLSQKLWEKSGHWEKFRENMFTLDTNVAEKDHNLIKDSIETKCALALKPMNC 349

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGS 170
                IF   IKSYR+LP    +     R E      G+MR R F+  DA+ F  T +  
Sbjct: 350 PGHIQIFNYTIKSYRDLPLRMAEFGSCHRYEPSGALYGLMRVRSFVQDDAHIF-CTEDQI 408

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                K      +++   G   + ++    P     + +    A+        +      
Sbjct: 409 TDETIKFCHLLKQVYQDFGFPEVKIKFSDRPEKRAGTDKIWDKAEQALIHAIQTLGEEYT 468

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
               E   +   +                                    R  + G     
Sbjct: 469 INRGEGAFYGPKLEFILTD---------------------------AIGREWQCGT---L 498

Query: 291 GTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              + LP  ++A++  ++G K   V +    +G+      ++   + G+  IW   +AP 
Sbjct: 499 QVDFVLPERLNASYISSEGSKKRPVILHRAILGSFERFIGILIEHYSGRLPIW---LAPI 555

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++++++I        +  ++++  L         D   ++I  +         PL  I+G
Sbjct: 556 QVAVVSIT---DEAVNYAKQLHQELIDNNIRSTLDISNQKINYKIRNFFTAKVPLIAILG 612

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            K     K+ I+   +  ++ +S  E+I +   
Sbjct: 613 KKESESGKIAIRTLGSQEQQVISSSELIAHIRK 645


>gi|224099691|ref|XP_002311580.1| predicted protein [Populus trichocarpa]
 gi|222851400|gb|EEE88947.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 159/449 (35%), Gaps = 43/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R + +   L+E    A+   H+L+         H  S G + +LP G +  + +   I+
Sbjct: 269 KRLQEYKQFLEE----AKKYDHRLLGIKQELFFCHPLSPGSWFFLPHGTRVYNKLMQFIK 324

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + +  LW  SG   +Y + M  L +  ++     P +      +F
Sbjct: 325 DEYRKRGYEEVKSPNIFNMKLWETSGHAANYKENMF-LLEIENQEFGLKPMNCPGHCLMF 383

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  ++SYR LP          R+E      G+ R R F   DA+ F       K     +
Sbjct: 384 QHRVRSYRELPLRLADFGALHRNEASGALTGLTRVRRFQQDDAHIF-CRKSQIKDEVRGV 442

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  + + G     ++  + P       E    A+   T+              +  
Sbjct: 443 LEFIDYTYGKFGFTY-ELKLSTRPEKYLGVLETWDEAEKALTEALDEFGKPWKIDEGDG- 500

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L    + +   ++    F    ++ L 
Sbjct: 501 -------------------AFYGPKIDISVSDALKRKFQCATLQLD----FQLPDRFKLE 537

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +     +  V +    +G++  + A++   + GK   WP  ++P +  +  +   
Sbjct: 538 YSA--EDEARSEAPVMIHRAILGSVERMFAILLEHYKGK---WPFWLSPRQAIVCPVSEK 592

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q       ++  ++ + G  V  D    +I  +   A L  +   ++VG +     +V 
Sbjct: 593 SQS---YALQVRDQIHEAGYYVDVDATDRKIQKKVREAQLAQYNYILVVGEEESKTGQVS 649

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R       MS+E ++       ++ R
Sbjct: 650 VRVRDNADHSVMSIESLLGLFKELVADFR 678


>gi|125975428|ref|YP_001039338.1| prolyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|152016597|sp|A3DJL6|SYP_CLOTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125715653|gb|ABN54145.1| prolyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
          Length = 572

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/250 (44%), Positives = 154/250 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++   +         +     
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSDSQEFMVKSAVGESRIAYCEACGYAANDEKAECVP 240

Query: 241 DIISLNSIVE 250
           +    +    
Sbjct: 241 EKCCDDKECC 250



 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSA 300
               ++            D+   K  D+ P+         GIEVGHIF  GTKYS  +  
Sbjct: 366 FHYKNVNINRDFKPKYVKDIRTIKEGDACPKCGAPVKVEFGIEVGHIFKLGTKYSEALDC 425

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +    GK+  + MG YGIG  R +AAVIE ++D  GIIWP S+AP+ + +I +   D V
Sbjct: 426 IYLDETGKERPMIMGCYGIGINRSMAAVIEQNNDENGIIWPISIAPYHVIVIPVNTTDSV 485

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIY +L ++G +V  DD  E+ G +F  ADL+G P+++ VG +   +  VE K 
Sbjct: 486 QMELAEKIYTQLGEMGIEVLLDDRDERPGVKFKDADLIGIPIRITVGKR-AGEGIVEYKL 544

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R       +  EE I  A    + 
Sbjct: 545 RREKDFAAIPYEEAIAKAKKEVAE 568


>gi|317487879|ref|ZP_07946471.1| threonyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325830610|ref|ZP_08164031.1| threonine--tRNA ligase [Eggerthella sp. HGA1]
 gi|316913005|gb|EFV34522.1| threonyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325487356|gb|EGC89798.1| threonine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 637

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 157/437 (35%), Gaps = 49/437 (11%)

Query: 17  DAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +AE   H+ + R   I+        G+  +LP G + +  +   +R +    G  E+  P
Sbjct: 234 EAEKRDHRKLGRELGIYTMDPLAGVGLPMYLPKGARVIRTMQEWLRRDLYERGYEEVITP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRL-----ADRNDK--AMIYGPTHEEVMTDIFRSHIKSY 125
            + +AD+W  SG Y  Y + M         D + +       P +      +++S + SY
Sbjct: 294 HVYNADVWKTSGHYGFYKENMYFFNINEGTDEDPRLTEYAVKPMNCPGHVMLYKSELHSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  +++    +R E+     G++R+R F   DA+ F  T +        +      I
Sbjct: 354 RDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVF-CTRDQVVDEVVAILDLVDHI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +       + P     + +    A     +  C++  + + I   +  F     
Sbjct: 413 MSTFGFQY-EAEISTRPEKSIGTDDMWEHATNALKE-ACARHELAYDINEGDGAFYG--- 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                              + K+ D++    + S   ++                 T++ 
Sbjct: 468 ----------------PKIDIKVKDAIGRTWQCSTVQVDFNMPER--------FELTYRT 503

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +    M      G++     ++   + G   +W   +AP +++++ +        +
Sbjct: 504 EDNTEERPWMLHRAIFGSIERFLGILIEHYAGALPLW---LAPVQVAVLPLA---DRHNE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A  ++  +L   G  +   D  E +  + A A     P  V++G K + +  V ++ R  
Sbjct: 558 AAHELAKQLKAAGGRIEVYDQNEPMRVKIAKAQSQKIPYMVVLGDKEIENGTVSVRERHE 617

Query: 424 GIREDMSLEEVINYASH 440
           G      +E+++     
Sbjct: 618 GDLGAWPVEQLVEKLRE 634


>gi|260591627|ref|ZP_05857085.1| threonine--tRNA ligase [Prevotella veroralis F0319]
 gi|260536427|gb|EEX19044.1| threonine--tRNA ligase [Prevotella veroralis F0319]
          Length = 649

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 159/458 (34%), Gaps = 47/458 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRRL 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +++
Sbjct: 287 LRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVY 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 AYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKAEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F   G  +   +                  D  + + +   D +     +   
Sbjct: 406 IDIILKVFATFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESEAAIK 451

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KY 294
              +   L                   E    +    K        +G  +  GT    Y
Sbjct: 452 AACEEKGL---------------KARVELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDY 496

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   D  K   V +     G++    AV+     G   +W   + P ++++
Sbjct: 497 NLPNRFKLEYTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAI 553

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +   D   K+ A           DD  E+IG +    +L   P  VIVG K  
Sbjct: 554 LPI---SEKYNDYARKVKAYFDAHDVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEA 610

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +   V ++ +  G +  M++EE     +   +     L
Sbjct: 611 AQGLVSMRQQGGGEQATMTMEEFTKRINDEVAEQLKTL 648


>gi|330823518|ref|YP_004386821.1| Prolyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329308890|gb|AEB83305.1| Prolyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 581

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM+R G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMMRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 112/212 (52%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D         +      A +D+ N    D  P+ K      RGIEVGH+FY  T
Sbjct: 369 CGANEEDFHITGVNWGRDLPEPDAVADLRNVVAGDPSPDGKGVLAIERGIEVGHVFYLST 428

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF G DGK  + +MG YGIG  R+ AA IE +HD +GIIWPD++APF + + 
Sbjct: 429 KYSKAMNATFLGEDGKPAFFEMGCYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVIC 488

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I     +  R   EK++  L   G DV  DD GE+ G+ FA  +L+G P ++ +G K +
Sbjct: 489 PIGMDRSEEVRAVAEKLHGELLASGIDVILDDRGERPGAMFADWELIGVPHRITIGDKGL 548

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + +VE  HR       + + E++ +   R +
Sbjct: 549 KEGQVEYLHRRDAGATKVGVAEILAHVKERVA 580


>gi|258652410|ref|YP_003201566.1| prolyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258555635|gb|ACV78577.1| prolyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 585

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/233 (43%), Positives = 140/233 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L NV  I+REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHRLLVRAGYIRRAAPGIYTWLPLGYRVLRNVERIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  DAIGAQEVHFPALLPREPYEATGRWTEYGDNLFRLQDRKQGDYLLGPTHEEMFTLLVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY+ LP + YQIQ K+RDE RPR G++R REF+MKD+YSFDL   G   SY +   +Y
Sbjct: 124 YSSYKGLPLSLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDAGLAASYQRHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           +RIF RLGL+ + + A SG +GG  S EF+     GE     S       + +
Sbjct: 184 IRIFDRLGLRYVIVAAMSGAMGGSASEEFLADCVNGEDTYVRSPAGYAANVEA 236



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +       +GK   V MGSYGIG  R VAA+ ESS+D KG+I
Sbjct: 423 RGIEMGHIFQLGRKYAQALGLQVLDENGKLVTVTMGSYGIGVSRAVAAIAESSYDDKGLI 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAP  + ++ I        D  E I A L   G  V  DD    +G +FA A+L+G
Sbjct: 483 WPREVAPADVHVV-IAGKSAEIVDTAELIAAGLDAAGITVMLDDRNASVGVKFADAELIG 541

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P   +VG + V++  VE++ R +G + ++ L EV+     R  
Sbjct: 542 VPTICVVG-RGVANGVVEVRDRASGDKTEVPLVEVVEQLRARVR 584


>gi|94985607|ref|YP_604971.1| threonyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|123079875|sp|Q1IY82|SYT_DEIGD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94555888|gb|ABF45802.1| threonyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 649

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 158/454 (34%), Gaps = 45/454 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQH-SKGIYSWLPLGQKALDNVNAIIR 58
            ++  L    E   +A    H+ + R     +I     KG+  WLP G    + +   +R
Sbjct: 229 ATQKELDEYLERLEEARRRDHRKLGRELELFLIDPLVGKGLPMWLPNGTVLREELTRFLR 288

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+Q +     +  P + + DL+  SG Y  Y          +++  +  P +      I+
Sbjct: 289 EQQFQRDYQGVVTPNIGNLDLFRTSGHYPYYSDSQFEPLSVDEEQYMLKPMNCPFHIRIY 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S  +SYR+LP    +    +R E+     G+ R R F   DA+ F   P+  K  +  +
Sbjct: 349 ASKPRSYRDLPVRLAEFGTVYRYEMSGELNGLTRVRGFTQDDAHIF-ARPDQLKKEFLDV 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + +    G+  +  R        D         +  E Q+  + + +  P      
Sbjct: 408 LDLTVLVLKTFGMNDVRFRVGVRDPASDKYVGDPAQWEVAERQIIEAVEEVGLP------ 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                             Y                  K V  R  ++G I      Y+LP
Sbjct: 462 ------------------YTVEPGDAAFYGPKLDFVVKDVLGREWQLGTI---QVDYNLP 500

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                T+ G DG++H  V +     G++     ++   + G    W   +AP +I LI I
Sbjct: 501 ERFDLTYTGEDGQEHRPVMIHRAPFGSLERFVGILIEHYGGDFPFW---LAPRQIMLIPI 557

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      + +       G     DD   ++ ++   A+L   P+ +IVG +  +  
Sbjct: 558 A---DRHNAYAQTLANEFKAAGLRAEVDDSNNRMNAKVRNAELHKIPVMLIVGDQEEARR 614

Query: 415 KVEIKHR---LTGIREDMSLEEVINYASHRFSNN 445
           +V ++ R       R+ +    ++     R+   
Sbjct: 615 EVSVRERTPEGHKERKGVDFTALLAELQERYRTR 648


>gi|21109942|gb|AAM38410.1| prolyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 583

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 20  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 80  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 140 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 200 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 243



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 422 RGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGII 481

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ FA  +LL
Sbjct: 482 WPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMFADMELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R     E +    + +   H
Sbjct: 542 GIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRLGH 583


>gi|319761647|ref|YP_004125584.1| prolyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|317116208|gb|ADU98696.1| prolyl-tRNA synthetase [Alicycliphilus denitrificans BC]
          Length = 581

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 157/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM+R G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMMRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC 224



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              + +D         +      A +D+ N    D  P+ K      RGIEVGH+FY GT
Sbjct: 369 CGANEEDFHITGVNWGRDLPEPDAVADLRNVVAGDPSPDGKGVLAIERGIEVGHVFYLGT 428

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF G DGK  + +MG YGIG  R+ AA IE +HD +GIIWPD++APF + + 
Sbjct: 429 KYSKAMNATFLGEDGKPAFFEMGCYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVIC 488

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I     +  R   EK++  L   G DV  DD GE+ G+ FA  +L+G P ++ +G K +
Sbjct: 489 PIGMDRSEEVRAVAEKLHGELLASGIDVILDDRGERPGAMFADWELIGVPHRITIGDKGL 548

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + +VE  HR       + + E++ +   R +
Sbjct: 549 KEGQVEYLHRRDAGATKVGVAEILAHVKERVA 580


>gi|325972697|ref|YP_004248888.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027935|gb|ADY14694.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 581

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 153/444 (34%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L++   RD      +L L + +  +   G+  W P+G +   ++    R E   
Sbjct: 171 RLYLQHLEDVEKRDHRKLGKELDLFS-LHEEAGPGLVYWHPMGARIRQSIENFWRSEHYA 229

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+++   
Sbjct: 230 NGYEMVYTPHIGRSWLWETSGHLDFYKDGMYPPMEMDKSDYYVKPMNCPFHIMIYKNSKH 289

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + ++   +R E      G+MR R F   DA+ F +TP+       ++    L
Sbjct: 290 SYRDLPCRWAELGTVYRYEKAGAMHGLMRVRGFTQDDAHLF-VTPDQMNDEILEVLRFSL 348

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            + H  G   I     + P            A     Q   ++                 
Sbjct: 349 HMLHSFGFTEINAYLSTKPEKSVGDPARWAAATEALRQAIVAEGLSYEIDEGGG------ 402

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    ++S    +                 TF
Sbjct: 403 --------------AFYGPKIDLKIKDAIGREWQLSTVQFDFNEPER--------FDMTF 440

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG +     +    +G++     V+   + G     P  ++P +I LI +    +  
Sbjct: 441 VDKDGVEKRPYMIHRALLGSIERFFGVLIEHYAGAF---PPWLSPEQIKLIPVG---ENF 494

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  RL K G  V  D   +++ ++   A  L  P  VI+G +   + +V ++ R
Sbjct: 495 FDYAKDLEKRLRKEGFRVSADLGDDRMNAKIRNAQQLKIPYMVIIGEREAQNDQVSVRLR 554

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +S +  I     +  + 
Sbjct: 555 TGKQENGLSTQAFIEMVKQKVESK 578


>gi|307297853|ref|ZP_07577659.1| prolyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306917113|gb|EFN47495.1| prolyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 580

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/228 (46%), Positives = 157/228 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P DA++ S KL++R G + + + GIYS+LPLG + L  +  I+R+E
Sbjct: 1   MRFSQLYAPTLKEAPADADLISIKLLVRGGFVRKVAAGIYSFLPLGFRVLKKIEDIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G+ E+ +P +Q A+LW E+GR+D YG EM+R+ DR+++    GPTHEE++T + R+
Sbjct: 61  MNAIGSQEILMPIIQPAELWHETGRWDDYGPEMMRMQDRHERFFTLGPTHEEIITHLLRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQI +K+RDE+RPRFG+MRSREFLMKDAYSF  +      +Y + + +
Sbjct: 121 ELNSYKQLPVSLYQIAMKYRDEIRPRFGLMRSREFLMKDAYSFHGSWSSLDETYKQFYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y +I  R+GL+ + + A+SG IGG+ SHEF VLAD GE+ +       
Sbjct: 181 YSKILQRIGLEFLVVEADSGAIGGNESHEFNVLADYGESTLLYCDCGY 228



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYF 290
            +      +    + ++        +  D+      D  P+      SA+GIEVGHIF  
Sbjct: 354 NAVCGALKEGYHYSGVLPGRDFKIDSWHDLKMVTEGDPCPKCGAPMKSAKGIEVGHIFKL 413

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GTKYS  M+       G   +  MG YG G  R ++A++E  HD  GIIWP +VAPF I 
Sbjct: 414 GTKYSEKMNGYVTDEKGNSIHYIMGCYGWGVSRTISAIVEQLHDENGIIWPLAVAPFDII 473

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  +   D +  +   ++Y  LS+ G +V  DD     G +F  ADL+G P+++ +G K 
Sbjct: 474 VTAVNIKDPIVSEKSIQLYDILSEAGFEVLLDDREISPGMKFKDADLIGIPVRITLGKK- 532

Query: 411 VSDSKVEIKHRLTGIREDMSL----EEVINYASHRFSNNRPV 448
           ++   VE+K R      ++S+    + ++       SN RPV
Sbjct: 533 LAQGIVEVKPRTEKKPLEVSIVDGFDTLLEEIKKELSNYRPV 574


>gi|261880448|ref|ZP_06006875.1| threonine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270332871|gb|EFA43657.1| threonine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 521

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 157/451 (34%), Gaps = 46/451 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y L + +   RD      ++ L      +  KG+  WLP G +    +  ++R+   
Sbjct: 101 LDEYLLMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTQLRLRLQELLRKLLK 159

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
                E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     +I+  
Sbjct: 160 PYNYQEVIAPGIGSKNLYVTSGHYAHYGKDAFQPIRTPEEDEEYMLKPMNCPHHCEIYAR 219

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +     R E      G+ R R F   DA+ F + PE  K  +  +  
Sbjct: 220 KPRSYKDLPLRIAEFGTVMRYEKSGELHGLTRVRSFTQDDAHIF-VRPEQVKAEFENVID 278

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              ++F   G  +   +                  D  +T  +   D +     +   + 
Sbjct: 279 IIQKVFAIFGFDNYEAQISLR--------------DPKDTDKYIGSDEIWEESQNAIREA 324

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSL 296
                +                   E    +    K        +G  +  GT    Y+L
Sbjct: 325 CQEKGM---------------KAREEIGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNL 369

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +   D  K   V +     G++    AV+     G   +W   + P +++++ 
Sbjct: 370 PERFKLEYTAEDNSKQVPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAILP 426

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +   D   ++           + DD  E+IG +    +L   P  VIVG K  ++
Sbjct: 427 I---SEKFNDYALEVKKHFDANDVRAYIDDRNEKIGRKIRDNELKRVPYMVIVGEKEANE 483

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V ++ +  G +  M + + I       ++
Sbjct: 484 GLVSMRKQGGGEQASMKITDFIQRIKDEVAD 514


>gi|37522455|ref|NP_925832.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|73919794|sp|Q7NCU0|SYT_GLOVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|35213456|dbj|BAC90827.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 627

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 156/443 (35%), Gaps = 48/443 (10%)

Query: 18  AEIASHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           A+   H+ + R  G+         G+  W P G      +   +R+EQ + G  ++  P 
Sbjct: 217 AKKRDHRKLGRELGLFVFSDLVGPGLPLWTPKGALLRYILEEFLRKEQVKRGYQQVVTPH 276

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNL 128
           +   DL+  SG +  Y  +M  L   +++       +  P +      I++S + SYR L
Sbjct: 277 IARVDLFKTSGHWFKYKDDMFPLMATSEEEGAEEGFVMKPMNCPFHIQIYKSELHSYREL 336

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +    +R E      G+ R R F + D++ F +TPE     + K+      +F  
Sbjct: 337 PIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDDEFKKVVDLIQFVFRS 395

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L L             GD     +   D    +   S    +    +      D+     
Sbjct: 396 LQL-------------GDGFSARLSFRDPTSDKYIGSDAAWEKAQAAILKASQDLGLKYF 442

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
           + E   A Y    D                  R  ++G +      Y LP      +   
Sbjct: 443 VAEGEAAFYGPKLDFIFRDALG----------REWQLGTV---QVDYILPERFELEYVAE 489

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG +   V +     G++    A++     G   +W   +AP ++ ++ +          
Sbjct: 490 DGSRRRPVMIHRAPFGSLERFIAILIEHFAGDFPLW---LAPEQVRILPVTDQ---FVGY 543

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +  RL  +      D   E++G +    +    P+ ++VG    +   V ++ R+ G
Sbjct: 544 AESVKDRLVSLEMRAEVDASSERLGKKIRNGETAKVPVLLVVGESEANSGTVAVRTRVEG 603

Query: 425 I--REDMSLEEVINYASHRFSNN 445
              +  + +EE I Y   R +  
Sbjct: 604 EKDKGTLPVEEAIAYLQERLAKR 626


>gi|254992869|ref|ZP_05275059.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 568

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 115/219 (52%), Positives = 147/219 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE 
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGED 219



 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 340 ENTRVFADNAVKDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W   ++PF + LI +    +      E +Y+ L   G  V  DD  E+ G +FA A
Sbjct: 460 NGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYSSLQDAGFSVLIDDRAERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 520 DLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|119484696|ref|ZP_01619178.1| prolyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457514|gb|EAW38638.1| prolyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 604

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 150/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK     L+E+P +AEI SHKL++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSKMLFVTLREDPAEAEIPSHKLLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAEECLLPQVQPAELWQESGRWDTYTKAEGIMFALRDRRNRDLALGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +  E  K +Y  M
Sbjct: 121 AKEMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHIDEESLKATYKDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  I  R GL    + A+SG IGG  S EF+VLA+ GE +V  ++D     
Sbjct: 181 DRAYRNILTRSGLAFRAVEADSGAIGGSGSQEFMVLAEAGEDEVLYTEDGKYAA 234



 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 99/174 (56%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIEVGHIF  GTKYS  M AT     G++  + MG YG+G  R+  + +
Sbjct: 425 HDPNQILETARGIEVGHIFQLGTKYSQMMGATCTNEKGEEIPLVMGCYGVGVSRLAQSAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+   +     +D    +  E +Y +L++VG +   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYHAIITIPNINDTQQLETAENLYTQLNQVGIETLLDDRNERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F  ADL+G P +++ G + +   KVEI  R T   +++++E+V++Y     +
Sbjct: 545 VKFKDADLIGIPYRIVTG-RSLKSGKVEIVERATHTSQEVAVEDVVSYLQKSIA 597


>gi|229061422|ref|ZP_04198767.1| Prolyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228717845|gb|EEL69493.1| Prolyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 566

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R  L    + A+SG +GG  +HEF+VL+D GE  +  S       
Sbjct: 181 YSNIFARCSLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDTSDYAA 231



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 339 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 397

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 398 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP SVAPF + +I +       R+    IY  L + G +V  DD  E+ G +FA
Sbjct: 458 DENGLVWPKSVAPFHVHVIPVNMKSDAQREMGGNIYNSLQEQGYEVLLDDRAERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 518 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 566


>gi|193788250|dbj|BAG53144.1| unnamed protein product [Homo sapiens]
          Length = 619

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 150/441 (34%), Gaps = 43/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 202 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 261

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 262 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 320

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 321 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 379

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 380 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 433

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 434 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 472

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 473 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 526

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      + I+ 
Sbjct: 527 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTINIRT 586

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 587 RDNKVHGERTISETIERLQQL 607


>gi|50294994|ref|XP_449908.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49529222|emb|CAG62888.1| unnamed protein product [Candida glabrata]
          Length = 726

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 160/440 (36%), Gaps = 42/440 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + +     + ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 314 AEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVDLLRSEYRKRGYEEVITP 373

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F++  +SYR LP+  
Sbjct: 374 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKARERSYRELPWRV 432

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +     +F     ++   G +
Sbjct: 433 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTQDQIEQEIENIFDFLKFMYGVFGFE 491

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A+                 P +                
Sbjct: 492 F-KMELSTRPEKYVGELETWDAAEKKLENALNKWGGAWELNPGDG--------------- 535

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDH 310
                A      +  + D+L    + +   ++    F    ++ L   A      +  + 
Sbjct: 536 -----AFYGPKIDIMISDALRRWHQCATIQLD----FQLPQRFELEFKAKDTEESENYER 586

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++     GK   WP  ++P +I ++ +       ++  +++  
Sbjct: 587 PVMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQILVVPVGVK---YQEYAQQVRD 640

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           ++   G     D  G  +  +     L+ +    IVG   ++++ V I++R    ++   
Sbjct: 641 KMHNAGFYADVDLTGNTLQKKVRTGQLMKYNFIFIVGETEMNENSVNIRNRDVMEQQGKN 700

Query: 428 -DMSLEEVINYASHRFSNNR 446
             ++++ V+       +  R
Sbjct: 701 ATVNVDIVLEQLQKLKAEKR 720


>gi|160900913|ref|YP_001566495.1| prolyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|226699138|sp|A9BP65|SYP_DELAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160366497|gb|ABX38110.1| prolyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 581

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A++W E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEMWEETGRFEKMGPELLRIKDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDTAQISYQTMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYC 224



 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +    RGIEVGH+FY GTKYS  M+ATF   +GK    +MG YGIG  R+ AA I
Sbjct: 406 PDGAGELAIERGIEVGHVFYLGTKYSQAMNATFLAENGKPSLFEMGCYGIGVTRLPAAAI 465

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E +HD +GIIWPD++APF + +  I     +  ++A EK++A L  +G DV  DD GE+ 
Sbjct: 466 EQNHDERGIIWPDAIAPFTVVVCPIGMDRSEPVKEAAEKLHAELLALGVDVILDDRGERP 525

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G+ FA  +L+G P +V++  + + + +VE +HR       M+  +V+ +   R 
Sbjct: 526 GAMFADWELIGVPHRVVLSDRGLKEGQVEYQHRRDTEATKMAAADVLGHLKQRL 579


>gi|113475159|ref|YP_721220.1| threonyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|110166207|gb|ABG50747.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Trichodesmium
           erythraeum IMS101]
          Length = 608

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 168/453 (37%), Gaps = 61/453 (13%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            +   R+      +L L    I       G+  W P G    +++   +++EQ + G + 
Sbjct: 196 EEALKRNHRKLGKELGL---FIFSDLVGPGLPLWTPKGTMLKNSLKDFLQQEQLKRGYLP 252

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHI 122
           +  P +   DL+  SG +  Y ++M  +   +++A       +  P +      I+++ +
Sbjct: 253 VDTPHIARIDLFKTSGHWQKYKEDMFPMMAEDEQAEALEQGFVLKPMNCPFHIQIYKNEL 312

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +    +R E     G + R R F   D++ F +TPE     +  +    
Sbjct: 313 RSYRELPIRLAEFGTVYRHEKSGELGGLTRVRGFTQDDSHLF-VTPEQLDAEFLSVVDLT 371

Query: 182 LRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           L +F  L L++   R           IG D + E    A     +      F      + 
Sbjct: 372 LFVFKSLQLQNFKARLSFRDPNLDKYIGSDEAWEKAEGAIRRAVEKMGMDHFEGIGEAAF 431

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                D I  +++                               R  ++G +      Y+
Sbjct: 432 YGPKLDFIFQDALE------------------------------REWQLGTV---QVDYN 458

Query: 296 LP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      +   DG +   V +     G++  +  ++   + G   +W   +AP ++ L+
Sbjct: 459 LPERFDLEYVAEDGTRKRPVMIHRAPFGSLERLIGILIEEYAGDFPVW---LAPTQVKLL 515

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            + +         +++  ++ +VG     D   E++G     A+    P+  +VG+K V 
Sbjct: 516 PVNS---EFWPFAQEVAEQMLQVGIRAEVDMSNERLGKLIRNAEKAKIPIMAVVGAKEVE 572

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + + I+ R TG    + + EVI   +   +N 
Sbjct: 573 SNSLSIRTRSTGELGSIPVMEVIQKMTKAIANY 605


>gi|307200699|gb|EFN80796.1| Threonyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 691

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 151/442 (34%), Gaps = 43/442 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +  + +E   RD      +        H+ S G   + P G    + +   IR E
Sbjct: 275 KQLKEWEKLQEEAAKRDHRKIGKE--QELFFFHELSPGSCFFQPRGAYIYNTLIDFIRSE 332

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG +  Y + M    D   +     P +      IF  
Sbjct: 333 YRKRGFQEVISPNIYNSKLWQVSGHWQHYAENMFSF-DVEKETYALKPMNCPGHCMIFDV 391

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+E+     G+ R R F   DA+ F  + +           
Sbjct: 392 RSRSWRELPLRLADFGVLHRNEMSGALTGLTRVRRFQQDDAHIF-CSVDQINKEILSALD 450

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     +   + P            A+                        
Sbjct: 451 FLRHVYSVFGFTF-DLCLSTRPEKFLGDIAIWNQAEKALEDSL----------------- 492

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               + +          A      +  + D+L    + +   ++    F    +++L   
Sbjct: 493 ---NTFDEPWTLNPQDGAFYGPKIDITIRDALKRAHQCATIQLD----FQLPIRFNL--- 542

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++    G+    V +    +G++  + A++  S+ GK   WP  ++P +  ++ + +  
Sbjct: 543 -SYVNESGEKVRPVIIHRAILGSVERMIAILTESYAGK---WPFWLSPRQAMVVPVASQ- 597

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   ++  +L   G  V  D D  +    +   A L  F   ++VG K  +   V 
Sbjct: 598 --LDEYAYQVKQKLWDAGIMVEIDVDPNDSFNKKIRNAQLAQFNFILVVGEKERNAGTVN 655

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           I+ R   +  +M +E++I    
Sbjct: 656 IRTRDNVVHGEMGVEDLIEKLK 677


>gi|220903768|ref|YP_002479080.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254783519|sp|B8J4E4|SYT_DESDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219868067|gb|ACL48402.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 647

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 150/436 (34%), Gaps = 40/436 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L T      + G+  WLP G      +    R+E  + G
Sbjct: 233 YLKQMEEAKRRDHRKLGRELSLFT-FKEDVAPGMVFWLPKGMLVRTILEDFWRKEHLKRG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L   + W +SG YD Y + M       + A    P +      I+ + + SY
Sbjct: 292 YDIVQGPQLLRVETWQKSGHYDHYRENMY-FTQIEEDAYGVKPMNCISHMLIYGNELHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++ +  R E      G++R R+F   DA+     PE  +    ++      +
Sbjct: 351 RDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICA-PEQLEGEILEVIHLIRDL 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +  G +   +   + P     + E   +A +   Q              +         
Sbjct: 410 MNLFGFEY-KVAVSTRPESSIGTDEAWEMATSALVQAVEKAGLPYTINEGDG-------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + +L D +    + S   ++    F    ++      T+ G
Sbjct: 461 ------------AFYGPKIDVRLLDCIGREWQCSTIQVD----FTLPERF----DLTYVG 500

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   M     +G++     ++  +  G    W   +AP +  L+ +    +   +
Sbjct: 501 QDGERHRPVMVHRAIMGSLERFIGILVENFAGALPTW---LAPEQARLLTVT---EAGDE 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A   +      +G     D   E++G +   A L   P  ++VG K V      ++ R  
Sbjct: 555 AVSSMLEEFKALGIRAQADTRNEKLGFKVREAQLAKVPYILVVGEKEVQAGGANVRLRNG 614

Query: 424 GIREDMSLEEVINYAS 439
                 S+ E+     
Sbjct: 615 DNLGLKSVAEIAALIR 630


>gi|119485182|ref|ZP_01619567.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457410|gb|EAW38535.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 608

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 165/444 (37%), Gaps = 45/444 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 196 EEALKRDHRKLGKELGLFI-FADVVGPGLPLWTPKGTVLRSTLEDFLKKEQLKRGYLPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  +   +++A       +  P +      I++S ++S
Sbjct: 255 TPHIGRIDLFKASGHWQQYREDMFPMMAEDEEAAKLEQGFVLKPMNCPFHIQIYKSELRS 314

Query: 125 YRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     G + R R F + D++ F +TPE  +  +  +    L 
Sbjct: 315 YRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLESEFLNVVDLILS 373

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F +L L +   R                  D    +   S    +    +     + + 
Sbjct: 374 VFGKLKLSNFKARLSFR--------------DPESDKYIGSDQVWNKAESAITKAVETLE 419

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
             + +     A Y    D   + + D          R  ++G +      Y+LP      
Sbjct: 420 MDHFLGIGEAAFYGPKLDFIFQDVLD----------REWQLGTV---QVDYNLPERFDLE 466

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG     V +     G++  +  ++   + G   +W   +AP ++ L+ +      
Sbjct: 467 YVAEDGTRQRPVMIHRAPFGSLERLIGILIEQYAGDFPLW---LAPIQVRLLAV---SDE 520

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  ++  +      D   E++G Q   A+    P+  I+G+K V  + + I+ 
Sbjct: 521 FLTYTQEVVEKMRSLDIRAEVDRSRERLGKQIRNAEKEKIPVMAIIGAKEVEANSLSIRT 580

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R +G    + ++EV     +  +N
Sbjct: 581 RASGELGTLPVDEVCQRIQNAIAN 604


>gi|78212568|ref|YP_381347.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Synechococcus
           sp. CC9605]
 gi|123756917|sp|Q3AKU0|SYT_SYNSC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78197027|gb|ABB34792.1| threonyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 611

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 152/431 (35%), Gaps = 38/431 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARIRLLIEEFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L PE       K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILKILDLTERILSAFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P           LA  G  +    K +                      
Sbjct: 381 FSNYEINLSTRPEKSIGEDAVWDLATKGLIEALERKGWAYKIDEGGG------------- 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
                  A      + K+ D++    + S   ++    F    ++       +  ADG K
Sbjct: 428 -------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERF----ELDYIAADGSK 472

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++     ++  ++ G    W   +AP ++ L+ +       +   E++
Sbjct: 473 QRPIMIHRAIFGSLERFFGIMTENYAGDYPFW---LAPEQVRLLPVT---DEVQPYAEQL 526

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L+K G     D  G+++G      + +  P+  ++G+K    + V ++ R  G    
Sbjct: 527 LDQLTKAGVRATVDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGV 586

Query: 429 MSLEEVINYAS 439
            ++ ++++ A 
Sbjct: 587 TAVSDLLSAAQ 597


>gi|77748729|ref|NP_643874.2| prolyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
 gi|114152277|sp|Q8PGP9|SYP_XANAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 224



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 403 RGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNHDDAGII 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ FA  +LL
Sbjct: 463 WPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMFADMELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P +V+V  + ++    E + R     E +    + +   H
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRLGH 564


>gi|283458510|ref|YP_003363138.1| prolyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134553|dbj|BAI65318.1| prolyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 624

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/234 (42%), Positives = 141/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  IIREE
Sbjct: 17  LRLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIIREE 76

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+D YG  + RL DR    M+  PTHEE+ T + + 
Sbjct: 77  MDAIGAQEVHFPALLPREPYEATNRWDEYGDNLFRLKDRKGADMLLAPTHEEMFTLLVKD 136

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +
Sbjct: 137 LYSSYKDLPVYLYQIQTKYRDEARPRAGLLRGREFVMKDSYSFNIDDEGLNEAYMAHRAA 196

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RLGL+ + + A+SG +GG  S EF+     GE     S       + +
Sbjct: 197 YQRIFERLGLEIVIVTAQSGAMGGSRSEEFLHPTPIGEDTFVRSAGGYAANVEA 250



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 263 HNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              +  D  P+   + V+ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G
Sbjct: 441 CEVREGDPAPDGSGELVAARGIEMGHIFALGRKYAEALGLKVLDQNGKLQTVTMGSYGVG 500

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA+ E +HD KG+IWP ++AP  + ++ I   D    +  E++ A L   G  V 
Sbjct: 501 VTRALAAIAEGNHDEKGLIWPRNLAPADVHIV-ITGKDAASHEYAEELSASLESAGLQVM 559

Query: 381 WDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD  +   G +F  A+LLG P  +++G +   D  +E+K R +G   ++S+E  +    
Sbjct: 560 LDDRPKTSPGVKFGDAELLGVPTILVIG-RGFKDGVLELKDRRSGEAREVSVENAVAEVI 618

Query: 440 HRFS 443
               
Sbjct: 619 AEVR 622


>gi|313609001|gb|EFR84741.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
          Length = 344

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 149/235 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L++ GE  +  S           
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSEIGEDTIAYSDASDYAANTEM 235


>gi|16800424|ref|NP_470692.1| prolyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|81853975|sp|Q92C35|SYP_LISIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|16413829|emb|CAC96587.1| prolyl-tRNA synthetase [Listeria innocua Clip11262]
          Length = 568

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 150/235 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLATLTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S           
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEM 235



 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   +  D  P+ + V
Sbjct: 340 EKIRVFADNAVKGIVNAVAGANEDGYHYVNVNPNRDFEVTSYFDLRMIQAGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGLSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++W   ++PF + LI +    +      E +Y  L K G  V  DD  E+ G +FA A
Sbjct: 460 NGLVWDKQISPFDLHLIPVNMKSEEQVAFAESLYDSLQKAGFSVLIDDRTERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 520 DLIGLPIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|254569696|ref|XP_002491958.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|238031755|emb|CAY69678.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|328351547|emb|CCA37946.1| threonyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 712

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 156/442 (35%), Gaps = 48/442 (10%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++A    H+ + R       ++ S G   WLP G +  + +  ++R E  + G  E+  P
Sbjct: 303 KEAAERDHRRIGREQELFYFNEMSPGSCFWLPHGTRIYNTLTDLLRTEYRKRGYEEVITP 362

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 363 NMYNSKLWETSGHWANYKENMFTFEVEK-ETFGLKPMNCPGHCLMFKSRERSYRELPWRV 421

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +  +   + +F     I+   G +
Sbjct: 422 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTQDQIEDEISNIFDFLKFIYGLFGFE 480

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A+                 P +                
Sbjct: 481 F-KMELSTRPEKFVGDIETWNNAEAKLENALNKWGGKWEVNPGDG--------------- 524

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-- 309
                A      +  + D+L    + +   ++    F    ++       ++  DG+D  
Sbjct: 525 -----AFYGPKIDIMISDALKRWHQCATVQLD----FQLPQRF----ELEYRTKDGQDDL 571

Query: 310 -HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    +G++  + A++     GK   WP  ++P ++ ++ +        D  +++
Sbjct: 572 TRPVMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLIVPVGVK---YFDYAQQV 625

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L  +      D  G  +  +     L  +    IVG +  +D  V +++R     ++
Sbjct: 626 QQELKGLDLYADVDLSGNTLQKKIRTGQLQRYNFIFIVGEQEQNDKSVNVRNRDIQELQN 685

Query: 429 ----MSLEEVINYASHRFSNNR 446
               + L +VI          R
Sbjct: 686 KNEAVPLVDVIPKLLQLRDERR 707


>gi|313633402|gb|EFS00238.1| prolyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 568

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 148/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S 
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFVALSDIGEDTIAYSD 225



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G++W
Sbjct: 405 GIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGLVW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              ++PF + LI +    +      E +Y  L + G  V  DD  E+ G +FA ADL+G 
Sbjct: 465 DKKISPFDLHLIPVNMKSEEQVAFAETLYQSLQQAGFSVLIDDRSERAGVKFADADLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 525 PIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|28212194|ref|NP_783138.1| prolyl-tRNA synthetase [Clostridium tetani E88]
 gi|81841121|sp|Q890M2|SYP_CLOTE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28204638|gb|AAO37075.1| prolyl-tRNA synthetase [Clostridium tetani E88]
          Length = 570

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/227 (48%), Positives = 147/227 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GM+ + + G+Y+++P G + +  +  I+REE
Sbjct: 1   MKLSNMLVSTLREVPAEAEIPSHKLMLRAGMMRKMASGVYNFMPFGLRVIKKIEDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E     L  ++LW ESGR+D +G EM RL DRN++    GPTHEEV TDI R+
Sbjct: 61  MDNAGAQEFLASALLPSELWKESGRWDVFGPEMFRLQDRNNREFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG+MRSREF+MKDAYSFD   E    SY KM+ +
Sbjct: 121 EINSYKQLPLNLYQIQTKYRDERRPRFGLMRSREFIMKDAYSFDKDYEDLDVSYKKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  IF R GL+   + A+SG +GG  S EF+V ++ GE ++      
Sbjct: 181 YHNIFIRCGLECNCVEADSGAMGGAGSAEFMVKSEVGEDEIAFCDSC 227



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 3/208 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
           ++                   D       D  P         RGIEVGHIF  GTKYS  
Sbjct: 360 NETGYHYKNANYKRDFEGIVGDYRKVIQGDKCPLCGGNIEIARGIEVGHIFKLGTKYSES 419

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M A F    G+   + MG YGIG  R +AA IE +HD  GI+WP S+AP+ + ++ +   
Sbjct: 420 MGANFLDEKGESRPLVMGCYGIGVSRTMAAAIEQNHDENGIVWPLSIAPYHVIVVPVITK 479

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+    A E+IY +L  +G +V  DD  E+ G +F  ADL+G P++V VG K + + KVE
Sbjct: 480 DEEQMKAAEEIYNKLKSMGVEVLLDDRAERPGVKFKDADLIGIPIRVTVGKK-IKEGKVE 538

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            K R     E +++E+V +     F  +
Sbjct: 539 YKLRKEEDLEILNIEQVYDKVREEFEKS 566


>gi|90424612|ref|YP_532982.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|90106626|gb|ABD88663.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 679

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 143/445 (32%), Gaps = 43/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G      + A +R   +   
Sbjct: 256 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWTIFQALIAYMRRRLSG-D 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M           + +     P +      IF+ 
Sbjct: 313 YDEVNAPQILDKALWEISGHWEWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKH 372

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T         K+  
Sbjct: 373 GLKSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTEAQLAEECLKINE 431

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     + E    A+     V                  
Sbjct: 432 LILSTYSDFGFGDIVVKLSTRPEKRVGTDEMWDHAERVMATVL---------------AE 476

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            +  S   I         A      E +       +    R  + G        ++LP  
Sbjct: 477 IEAASGGRIKTSINPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLPER 527

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +  ADG K   V +     G+M     ++     G   +W   +AP ++ +  I +
Sbjct: 528 FGAFYIDADGSKKAPVMVHRAICGSMERFIGILIEHFAGSFPLW---LAPVQVVVTTITS 584

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  + + A   + G  V  D   E+I  +     L   P  ++VG K     +V
Sbjct: 585 EGD---DYAKVVAAAARRAGLRVELDLRNEKINYKVREHSLAKIPAMLVVGKKEAESHQV 641

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  +   E I      
Sbjct: 642 SVRRLGSEGQTVLPTNEAIAALVEE 666


>gi|45185649|ref|NP_983365.1| ACL039Wp [Ashbya gossypii ATCC 10895]
 gi|44981367|gb|AAS51189.1| ACL039Wp [Ashbya gossypii ATCC 10895]
          Length = 724

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 156/424 (36%), Gaps = 41/424 (9%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A    H+ + R     M ++ S G   WLP G +  +N+  ++R E  + G  E+  P 
Sbjct: 314 EAAKRDHRKIGREQELFMFNEMSPGSCFWLPHGTRIYNNLVELLRNEYRKRGYEEVITPN 373

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + ++ LW  SG + +Y + M        ++    P +      +F+S  +SYR LP+   
Sbjct: 374 MYNSKLWETSGHWANYKENMFTFEVEK-ESFGLKPMNCPGHCVMFKSRERSYRELPWRVA 432

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E      G+ R R F   DA+ F    +  +     +F     ++   G + 
Sbjct: 433 DFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCA-QDQIETEIEGLFDFLKYVYGVFGFEF 491

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P       E    A+         K   D+ I   +  F        I    
Sbjct: 492 -KLELSTRPENYVGDLETWNNAEARLESALN-KWGGDWEINEGDGAFYGPKIDIMIS--- 546

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                           D+L    + +   ++    F    ++ L         +  +  V
Sbjct: 547 ----------------DALKRWHQCATIQLD----FQLPNRFELEYKGKGNDENAYERPV 586

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++  + A++   + GK   WP  ++P ++ ++ +       +D  ++I  +L
Sbjct: 587 MIHRALLGSVERMTAILTEHYAGK---WPFWLSPRQVLVVPVGVK---YQDYAQQIRDKL 640

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIRED 428
              G     D     +  +     +L +    +VG + ++++ V I++R      G  E 
Sbjct: 641 VGAGFYADADLGSNTLQKKVRTGQMLKYNFIFVVGEQEMNENSVNIRNRDVTDLQGKNET 700

Query: 429 MSLE 432
           +  +
Sbjct: 701 VDFD 704


>gi|319795456|ref|YP_004157096.1| prolyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315597919|gb|ADU38985.1| prolyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 581

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ASH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASRFFVSTLKEAPADAEVASHRLMMRAGMIKKLGTGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+++P +Q A+ W E+GR++  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIELTMPVVQPAEFWQETGRFEKMGPELLRIKDRHDRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDLDAAKASYQIMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL+   + A+SG IGGDLS EF V+A TGE  +    D     
Sbjct: 181 YRNIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPDSNYAA 231



 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D         +        +D+ N    D+ P+ K      RGIEVGH+F  GTKYS  M
Sbjct: 375 DFHMTGVNWGRDLPEPEIVADLRNVVAGDASPDGKGVLAIERGIEVGHVFVLGTKYSKDM 434

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +AT+    GK  +++MG YGIG  R+ AA IE +HD +GIIWPD++APF + +  I    
Sbjct: 435 NATYLDEGGKPQFLEMGCYGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVVCPIGMDR 494

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               + + E +Y  L   G DV  DD GE+ G+ FA  +L+G P +V++  + + + ++E
Sbjct: 495 SPEVKVSAEALYEELLAKGVDVLLDDRGERPGAMFADWELIGVPHRVVISDRGLKEGQLE 554

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            +HR       +   ++ ++ + + +
Sbjct: 555 YQHRRDTAATKVPSADIADFIAGKLA 580


>gi|115524346|ref|YP_781257.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|115518293|gb|ABJ06277.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris BisA53]
          Length = 679

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 136/424 (32%), Gaps = 43/424 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G      + A +R       
Sbjct: 257 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWTIFQALIAYMRRRLAG-D 313

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +D Y + M           + +     P +      I++ 
Sbjct: 314 YDEVNAPQILDKVLWETSGHWDWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHIQIYKH 373

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T         K+  
Sbjct: 374 GLKSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVF-CTELQLAEECLKINE 432

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     + E    A+     V                  
Sbjct: 433 LILSTYSDFGFGDIVVKLSTRPDKRVGTDESWDHAERVMATVL---------------AE 477

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            +  S   I         A      E +       +    R  + G        ++LP  
Sbjct: 478 IEAASGGRIKTAINPGEGAFYGPKFEYVL------RDAIGRDWQCGTT---QVDFNLPER 528

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +  ADG K   + +     G+M     ++     G   +W   ++P ++ +  I +
Sbjct: 529 FGAFYIDADGAKKTPIMVHRAICGSMERFTGILIEHFAGHFPLW---LSPVQVMVTTITS 585

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  + + A   K G  V  D   E+I  +     L   P  ++VG K      V
Sbjct: 586 EGD---DYAKVVAAAARKAGLRVEIDLRNEKINYKVREHSLAKIPAMLVVGKKEAETHSV 642

Query: 417 EIKH 420
            ++ 
Sbjct: 643 SVRR 646


>gi|264676905|ref|YP_003276811.1| prolyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262207417|gb|ACY31515.1| prolyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 580

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE  +    +     
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYCPNSDYAA 231



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGT 292
              + +D         +     A  +D+ N    D  P+   +    RGIE+GH+FY GT
Sbjct: 368 CGANEEDFHITGVNFGRDLPEPAVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGT 427

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M ATF G +GK  + +MG YGIG  R+ AA +E +HD +G+IWPD++APF + + 
Sbjct: 428 KYSKAMEATFLGDNGKPQHFEMGCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVIC 487

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I     +  +   EK+Y  L  +G DV  DD  E+ G+  A  +L+G P +V++G + +
Sbjct: 488 PIGMGRSEAVKTEAEKLYGELLALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGL 547

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  VE + R       ++  EV+ +   R 
Sbjct: 548 KEGVVEYQQRRDTEATKLATNEVLAHLKSRL 578


>gi|313896347|ref|ZP_07829900.1| proline--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975146|gb|EFR40608.1| proline--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 570

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLMYRAGLIRKSAGGMYTYLPLAWRTLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+LW ESGR+ +YG EM+R+ DR+++A   GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAELWEESGRWGAYGAEMMRIQDRHERAFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVMLYQIQDKFRDERRPRFGVMRSREFIMQDLYSFDKDVEGMHESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F R GL    + A+ G IGG  S EF VLA  GE+++ C        
Sbjct: 181 YTNVFTRCGLNFRAVEADCGAIGGGRSEEFTVLAPEGESRIACCDACSYAA 231



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 107/219 (48%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
              M   +   N       ++N + +      A    V    L  +  E     +RGIE 
Sbjct: 350 AMRMKNAVSGANEQDYHYTNVNPVRDFAHVTVADIRLVAEGDLCPACGEGHLHISRGIEA 409

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G IF  GTKYS  M A F   DGK   +QMG YGIG  R +AA IE +HD  GIIWP ++
Sbjct: 410 GQIFALGTKYSEAMQANFLDVDGKLKPLQMGCYGIGVGRTMAAAIEQNHDEHGIIWPRAI 469

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+G+P+++
Sbjct: 470 APYEVVVVAVNAKVEEQLAYAEEIYEELRAAGIDVLLDDRRERAGVKFNDCDLIGYPVRI 529

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +G K + +  +E+K R TG   + + +  +       +
Sbjct: 530 AIGPKTIENGSIEVKLRRTGELVNFARDTYLKGVRDMLA 568


>gi|320529253|ref|ZP_08030345.1| prolyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138883|gb|EFW30773.1| prolyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 570

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+L+ R G+I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLLYRAGLIRKSAGGMYTYLPLAWRTLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+LW ESGR+ +YG EM+R+ DR+++A   GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAELWEESGRWGAYGAEMMRIQDRHERAFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVMLYQIQDKFRDERRPRFGVMRSREFIMQDLYSFDKDVEGMHESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F R GL    + A+ G IGG  S EF VLA  GE+++ C        
Sbjct: 181 YTNVFTRCGLNFRAVEADCGAIGGGRSEEFTVLAPEGESRIACCDACSYAA 231



 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 107/219 (48%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
              M   +   N       ++N + +      A    V    L  +  E     +RGIE 
Sbjct: 350 AMRMKNAVSGANEQDYHYTNVNPVRDFAHVTVADIRLVAEGDLCPACGEGHLHISRGIEA 409

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G IF  GTKYS  M A F   DGK   +QMG YGIG  R +AA IE +HD  GIIWP ++
Sbjct: 410 GQIFALGTKYSEAMQANFLDVDGKLKPLQMGCYGIGVGRTMAAAIEQNHDEHGIIWPRAI 469

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+G+P+++
Sbjct: 470 APYEVVVVAVNAKVEEQLAYAEEIYEELRAAGIDVLLDDRRERAGVKFNDCDLIGYPVRI 529

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +G K + +  +E+K R TG   + + +  +       +
Sbjct: 530 AIGPKTIENGSIEVKLRRTGELVNFARDTYLKGVRDMLA 568


>gi|255326388|ref|ZP_05367472.1| proline--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255296605|gb|EET75938.1| proline--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 610

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/234 (42%), Positives = 141/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  IIREE
Sbjct: 3   LRLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIIREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+D YG  + RL DR    M+  PTHEE+ T + + 
Sbjct: 63  MDAIGAQEVHFPALLPREPYEATNRWDEYGDNLFRLKDRKGADMLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +
Sbjct: 123 LYSSYKDLPVYLYQIQTKYRDEARPRAGLLRGREFVMKDSYSFNIDDEGLNEAYMAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RLGL+ + + A+SG +GG  S EF+     GE     S       + +
Sbjct: 183 YQRIFERLGLEIVIVTAQSGAMGGSRSEEFLHPTPIGEDTFVRSAGGYAANVEA 236



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 263 HNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              +  D  P+   + V+ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G
Sbjct: 427 CEVREGDPAPDGSGELVAARGIEMGHIFALGRKYAEALGLKVLDQNGKLQTVTMGSYGVG 486

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA+ E +HD KG+IWP ++AP  + ++ I   +    +  E++ A L   G  V 
Sbjct: 487 VTRALAAIAEGNHDEKGLIWPRNLAPADVHIV-ITGKEAASHEYAEELSASLESAGLQVM 545

Query: 381 WDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD  +   G +F  A+LLG P  +++G +   D  +E+K R +G   ++S+E  +    
Sbjct: 546 LDDRPKTSPGVKFGDAELLGVPTILVIG-RGFKDGVLELKDRRSGEAREVSVENAVAEVI 604

Query: 440 HRFS 443
               
Sbjct: 605 AEVR 608


>gi|119383706|ref|YP_914762.1| threonyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|166225473|sp|A1B0M2|SYT_PARDP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119373473|gb|ABL69066.1| Ser-tRNA(Thr) hydrolase [Paracoccus denitrificans PD1222]
          Length = 648

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 152/449 (33%), Gaps = 53/449 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L +L+E    A    H+ + R        + + G+  W P G      + A +R   
Sbjct: 234 KAHLTMLEE----AAKRDHRKLGREMELFHFQEEAPGMVFWHPNGWSIYRELEAYMRRRL 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTD 116
            R    E+  P +    LW +SG +++Y + M  +    +     +     P +      
Sbjct: 290 IRADYKEIKTPQVVDRILWEKSGHWEAYRENMFIVEVDEEGAKEKRINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++   +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +    
Sbjct: 350 VYNQGLKSYRDLPLRLAEFGSCHRYEPSGSMHGLMRVRGFVQDDAHIF-CTEDQIEAECA 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   ++  LG +   ++  + P     S E    A+          D      P +
Sbjct: 409 GFIGLLSSVYKDLGFEKFDIKLSTRPDVRVGSDEIWDKAEAALKGAIEHLDLPYEVNPGD 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +                                    R  + G    F   ++
Sbjct: 469 GAFYGPKLDFKLTD---------------------------AIGREWQCGT---FQCDFN 498

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP  + A + G DG  H  V +    +G+      ++  ++ GK  +W   +AP ++ + 
Sbjct: 499 LPQRLEAEYVGEDGAKHMPVMLHRAVLGSFERFIGILIENYSGKLPLW---LAPRQVVVA 555

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I +      D   ++ A L   G     D   E+I  +     +   P+ + VG K V 
Sbjct: 556 SIVSG---ADDYVHEVVAALRAAGLRAEADTRNEKINYKVREHSVGKVPVIMAVGLKEVE 612

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V I+       E   LE  I      
Sbjct: 613 ERSVSIRRLDRQGSESHGLESAIATLRAE 641


>gi|313638094|gb|EFS03361.1| prolyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 568

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 148/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S 
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFVALSDIGEDTIAYSD 225



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G++W
Sbjct: 405 GIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGLVW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              ++PF + LI +    +      E +Y  L + G  V  DD  E+ G +FA ADL+G 
Sbjct: 465 DKKISPFDLHLIPVNMKSEEQVAFAETLYQSLQQAGFSVLIDDRSERAGVKFADADLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 525 PIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|291295577|ref|YP_003506975.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290470536|gb|ADD27955.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 652

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 152/446 (34%), Gaps = 33/446 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y     +   RD       L L T +  +  KG+  WLP G      +   + +++ 
Sbjct: 238 LEHYLWQQEEAKRRDHRRLGQALELFT-ISEEVGKGLPLWLPRGAFIRRQMEDYMYQKEQ 296

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P + +A L+  SG    Y  +M    +   +     P +      I+++  
Sbjct: 297 EHGYHYVYTPHIANARLYYTSGHLPYYKDDMYAPIEIEGEEYYLKPMNCPHHHMIYKARP 356

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +    +R EL     G+ R+R F   DA+ +          + ++   +
Sbjct: 357 KSYRDLPLRLAEFGTVYRFELSGTLSGLTRARGFTQNDAHIYCSRA-QVTEEFIRVIQLF 415

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G+     R                  +    +     D     I +     ++
Sbjct: 416 DEVYKDFGISDYWFRLSLPDF------------ENNPEKFGEENDNWRDSIKAIRAALEE 463

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +           Y    DV    +     + + ++   ++      FG +++      
Sbjct: 464 TGAKYVEGIGEATFYGPKLDVQIRSVL---GKEETIATNQLDFIVPERFGLEFT------ 514

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                G K+  V +    +G+     A       G   +W   ++P +  ++ I      
Sbjct: 515 --NEKGEKETPVVIHRAIMGSFDRFFAFYLEHTAGDFPLW---LSPIQAVIVPIA---DR 566

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+ A + K    V  DD  E++ ++   A+L   PL ++VG K      V ++ 
Sbjct: 567 HLEYAQKVAAEMRKNRLRVEIDDRSERMNAKIRDAELQKIPLILVVGDKEAEAGTVNVRE 626

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R    +  +++  +I     R    +
Sbjct: 627 RHVKEQRTLAVAALIEEMKARVEARK 652


>gi|169836558|ref|ZP_02869746.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 282

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++AE+ SHKLMLR  MI Q ++G+YS+LPLG K L  +  I+REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAEVISHKLMLRASMIRQLTRGVYSYLPLGYKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A LW ESGR+ +YG E++R+ DRN++    GPTHEEV+TDI R+
Sbjct: 61  MDRAGSQEILMPVLQPASLWEESGRWFAYGSELMRMKDRNEREFALGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REFLMKDAYSF LT E     +  M  +
Sbjct: 121 TITSYKELPFNLYQIQTKFRDEMRPRFGLMRGREFLMKDAYSFHLTKESLDEEFLNMKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RI  R+ LK   + A+SG IGGD S+EF+VLA+ GE  +  S       
Sbjct: 181 YSRILERMELKFRAVDADSGSIGGDASNEFMVLAENGEDDILYSDSSDYAA 231


>gi|114659237|ref|XP_510628.2| PREDICTED: threonyl-tRNA synthetase-like 2 [Pan troglodytes]
          Length = 801

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 152/440 (34%), Gaps = 43/440 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 391 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 450

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 451 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 509

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 510 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLRFLQSVYST 568

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 569 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 616

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+    G
Sbjct: 617 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYMNKVG 659

Query: 308 KD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C     
Sbjct: 660 ILGRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYAL 713

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   I
Sbjct: 714 QVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNKI 773

Query: 426 REDMSLEEVINYASHRFSNN 445
             ++ +   I+   +     
Sbjct: 774 HGEILVTSAIDKLKNLKKTR 793


>gi|313623934|gb|EFR94040.1| prolyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 568

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 150/235 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLATLTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S           
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEM 235



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   +  D  P+ + V
Sbjct: 340 EKIRIFADNAVKDIVNAVAGANEDGYHYVNVNPNRDFEVTSYFDLRMIQAGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGLSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++W   ++PF + LI +    +      E +Y  L K G  V  DD  E+ G +FA A
Sbjct: 460 NGLVWDKQISPFDLHLIPVNMKSEEQVAFAESLYDSLQKAGFSVLIDDRTERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 520 DLIGLPIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|157692336|ref|YP_001486798.1| prolyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|166980100|sp|A8FDC1|SYP_BACP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157681094|gb|ABV62238.1| proline--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 565

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE  SH+L++R G I Q++ GIY +LPL  K + ++ +I+R+E
Sbjct: 1   MRQSLTFIPTLREVPADAEAKSHQLLVRAGFIRQNTSGIYHYLPLAHKVIQHIQSIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQ A++W ESGR+ +YG E++R+ DR+ +    GPTHEEV+T + RS
Sbjct: 61  MEKAGAAELLMPVLQQAEMWQESGRWYTYGPELMRMKDRHGREFALGPTHEEVITSLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  +PE    +YNKMF +
Sbjct: 121 EVKSYKKLPLTLYQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHSSPESLDDTYNKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F ++GL   P+ A+SG +GG  +HEF+ L++ GE  +  S 
Sbjct: 181 YSNVFSKVGLNFRPVIADSGAMGGKDTHEFMALSEVGEDTIAYSD 225



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG +F  GT+YS  M AT+   +G+   + MG YGIG  R ++A++E  HD KGII
Sbjct: 405 KGIEVGQVFKLGTRYSESMDATYLDENGRAQPMIMGCYGIGISRTLSAIVEQHHDEKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP++VAP+ + L+ +   +   ++  E +Y RL   G DV +DD  E+ G +FA +DL+G
Sbjct: 465 WPEAVAPYDLHLLALNMKNDAQKELAETLYERLENEGFDVLFDDRQERAGVKFADSDLIG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            P+++  G +   +  VE+K R +G   ++S++E+I++   
Sbjct: 525 LPIRISCGKRS-EEGIVEVKFRKSGESHEVSVDELISFIRQ 564


>gi|221068963|ref|ZP_03545068.1| prolyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220713986|gb|EED69354.1| prolyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 580

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKATQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE  +    +     
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYCPNSDYAA 231



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 3/211 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGT 292
              + +D         +     A  +D+ N    D  P+   +    RGIE+GH+FY GT
Sbjct: 368 CGANEEDFHITGVNFGRDLPEPAVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGT 427

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M ATF G +GK  + +MG YGIG  R+ AA +E +HD +G+IWPD++APF + + 
Sbjct: 428 KYSKAMDATFLGDNGKPQHFEMGCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVIC 487

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I     +  +   EK+Y  L  +G DV  DD  E+ G+  A  +L+G P +V++G + +
Sbjct: 488 PIGMGRSEAVKTEAEKLYGELLALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGL 547

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  VE + R       ++  EV+ +   R 
Sbjct: 548 KEGVVEYQQRRDTEATKLATNEVLGHLKSRL 578


>gi|295101322|emb|CBK98867.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Faecalibacterium
           prausnitzii L2-6]
          Length = 594

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 162/449 (36%), Gaps = 41/449 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREE 60
           +  L   ++  ++A    H+ + +   +        +G+  +LP G      +   I+E+
Sbjct: 177 QEELDAWEKEQQEARERDHRKIGKEMGLFMTDDLVGRGLPMFLPAGYTVWQELENYIKEK 236

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           +   G + +  P + + +L+  SG +D Y + M    +   ++ +  P +      I+ +
Sbjct: 237 ERARGYLHVMTPCIGTVNLYKTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIYAN 296

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP    +I   FR E      G+ R R F   DA+ F  TPE  K     +  
Sbjct: 297 RPHSYRDLPMRIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLF-CTPEQIKSEVADVCN 355

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +    +                        D  + + +   D M           
Sbjct: 356 LIFETYKDFNITDYRCVLSLR--------------DPADKKKYHDDDAMWNHAE---NAL 398

Query: 240 DDIISLNSIVEQWTAPYAATSDVH-NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++++   I        AA      +  +  ++     +S   ++    F    K+    
Sbjct: 399 REVLTELGIHFTEEIGEAAFYGPKLDVNVKPAVGAEYTLSTCQLD----FCLPAKF---- 450

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DG +   V +    +G++    A +     GK   W   +AP ++ ++ +   
Sbjct: 451 HLTYVDKDGTEKTPVVLHRAILGSLDRFMAYLIEETKGKFPTW---LAPVQVKVLPV--- 504

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKV 416
            +   +  E I  +L + G  V  DD  ++IG +   A  +   P  +++G+K      V
Sbjct: 505 SEKTLEYSEAITEKLVEAGVRVALDDDNQKIGYKIRAAQQVDRVPYMLVLGAKEAEAGNV 564

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    M ++E I   +    N 
Sbjct: 565 SVRDRK-GETTTMEVDEFIAKVTSEIKNR 592


>gi|326318382|ref|YP_004236054.1| prolyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375218|gb|ADX47487.1| prolyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 581

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFVSTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEFWQETGRFDKMGPELLRIRDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +          
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQSDYAA 231



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 112/212 (52%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              +  D         +        +D+ N    D  P+ K      RGIEVGH+FY GT
Sbjct: 369 CGANEVDFHMTGVNWGRDLPEPDVVADLRNVVAGDPSPDGKGALAIERGIEVGHVFYLGT 428

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF G DGK  + +MG YGIG  R+ AA IE +HD +GIIWPD++APF + + 
Sbjct: 429 KYSRAMNATFLGEDGKPAFFEMGCYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVVC 488

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I     +  R A EK++A L   G DV  DD GE+ G+ FA  +L+G P +V++  + +
Sbjct: 489 PIGMDRSEEVRAAAEKLHADLLAAGVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGL 548

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + +VE +HR       ++  ++  +   R  
Sbjct: 549 KEGQVEYQHRRDAAATKVASADIFAFIKDRIK 580


>gi|328944057|ref|ZP_08241522.1| proline--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327492026|gb|EGF23800.1| proline--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 616

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/230 (48%), Positives = 150/230 (65%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK + P L+E+P DA+IASHKL++R GMI + + G+YS+LPL  +++  + +IIREE 
Sbjct: 47  RMSKLYAPTLKEDPTDADIASHKLLVRAGMIRKAAAGLYSYLPLAWRSIQKIESIIREEM 106

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A EM  P L  A+LW +SGR+ +YG E++RL DR+D     GPTHEE  TD+ R+ 
Sbjct: 107 EAIDAQEMLAPILTDAELWHQSGRWGAYGPELMRLTDRHDHEYALGPTHEETFTDLIRNE 166

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY++LP T Y IQ KFRDE RPRFG+MR REF+MKD YSF    E     Y +   +Y
Sbjct: 167 LKSYKDLPVTLYHIQDKFRDERRPRFGLMRGREFIMKDGYSFCANQESLHECYEQEKDAY 226

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             I  R GL+++P+ A+SG IGGD S EF+ LAD GE ++          
Sbjct: 227 ATIARRCGLRAVPVVADSGQIGGDTSVEFMALADAGEAELIYCDACDYAA 276



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/193 (41%), Positives = 114/193 (59%), Gaps = 2/193 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   +  DS P       SARGIE+  +F  GTKYS  M ATF   DG +    MG 
Sbjct: 422 WQDLIVTEAGDSCPCCSAALKSARGIEISQVFQLGTKYSKAMGATFMDEDGTEKPFIMGC 481

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AAV+E SHD  GIIWP SVAP+++++I +  HD+      +++   L K G
Sbjct: 482 YGIGVSRTLAAVVEQSHDEHGIIWPVSVAPYEVAVIPLDVHDETVWPVAQRLAEGLIKAG 541

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD GE+ G +F  ADL+GFP QV+ G K ++ + VE+K+R TG R ++ ++EV++
Sbjct: 542 IEVIVDDRGERPGIKFNDADLMGFPYQVVCGKKALAHACVEVKNRATGERTEVPVDEVVD 601

Query: 437 YASHRFSNNRPVL 449
           +  H     R  L
Sbjct: 602 HLVHEIVPQRQGL 614


>gi|324505892|gb|ADY42525.1| Threonyl-tRNA synthetase [Ascaris suum]
          Length = 706

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 162/444 (36%), Gaps = 45/444 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +  + +E    A    H+ + R       H  S G   W P G    + +   +R
Sbjct: 286 KQLKEWQRLQEE----AAKRDHRKIGRDQELFFFHPLSPGAAFWYPKGAHIYNTLCNFMR 341

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +  + G  E+  P + ++ LW +SG +  Y   M ++     +     P +      ++
Sbjct: 342 NQYRKRGFTEVISPNMFNSKLWEQSGHWQHYSDGMFKIEVEK-ELFGLKPMNCPGHCLMY 400

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +++  LP  +    +  R+EL     G+ R R F   DA+ F   P+         
Sbjct: 401 SHMPRTHNELPMRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRPDQINSEIKGC 459

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  +   +  +   + P  G L           E +    +    + +   + 
Sbjct: 460 IDFINYVYVDVFGFTFKLNLSTRPEEGFLGDIATWDHAEAELKKALDESGHPWELNPGDG 519

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F       +I                    D+L    + +   ++    F    ++ L 
Sbjct: 520 AFYGPKIDVTIQ-------------------DALKRYHQCATIQLD----FQLPQRFDLA 556

Query: 298 MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   + +     M     +G++  + A++  +  GK   WP  ++P +  +I +  
Sbjct: 557 ----YFDENNERKRPVMVHRALLGSIERMTAILTENFGGK---WPFWLSPRQAKVITV-- 607

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +  R   +++  +L + G +V +D+M  + +  Q   A L  F   ++VG K   +  
Sbjct: 608 -HESQRVYAKEVQKKLYEAGFEVEFDEMCSDTLNKQIRNAQLAQFNFILVVGPKEAQNGT 666

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           V ++ R   +R ++ L+++I   +
Sbjct: 667 VNVRTRDNAVRGEVKLDDLIEKFT 690


>gi|317969695|ref|ZP_07971085.1| threonyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 590

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 152/450 (33%), Gaps = 38/450 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+Y     +   RD       L L + +  +   G+  W P G +    +  + RE  
Sbjct: 172 QLSEYKRRQEEAKRRDHRRIGTDLDLFS-IEDEAGAGLVFWHPRGARMRLLIENLWRELH 230

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +    LW  SG  D Y + M      +++     P +       + S 
Sbjct: 231 FNAGYELLYTPHVADISLWKTSGHLDFYSESMFGPMQVDEREYQLKPMNCPFHVLTYAST 290

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP  + ++   +R E      G+MR R F   DA+ F L PE        +   
Sbjct: 291 LRSYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILAILDL 349

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +I      ++  +   + P           LA  G  +    K +             
Sbjct: 350 TEQILSTFDFRNYEINLSTRPEKSIGEDAVWDLATQGLIEALERKGWAYKIDEGGG---- 405

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + K+ D++    + S   ++    F    ++      
Sbjct: 406 ----------------AFYGPKIDLKIEDAIGRMWQCSTVQLD----FNLPERF----DL 441

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ADG +   + +     G++     ++  ++ G    W   +AP +I L+ +     
Sbjct: 442 EYVAADGSRQRPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT---D 495

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E + A L   G     D  G+++G      + +  P+  ++G+K      + ++
Sbjct: 496 EVTGYAESVAAALKAAGVRASVDHSGDRLGKLIRNGEQMKIPVLGVIGAKEAEGGTISLR 555

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            R  G    + LE V+  A     +    L
Sbjct: 556 SRREGDLGSIELETVVAAAKEANQDREAGL 585


>gi|289434600|ref|YP_003464472.1| hypothetical protein lse_1235 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170844|emb|CBH27386.1| proS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 568

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 148/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S 
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFLALSDIGEDTIAYSD 225



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D  G++W
Sbjct: 405 GIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYGIGVSRILSAIAEQSNDENGLVW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              ++PF + LI +    +      E +Y  L + G  V  DD  E+ G +FA ADL+G 
Sbjct: 465 DKKISPFDLHLIPVNMKSEEQVAFAETLYQSLQQAGFSVLIDDRSERAGVKFADADLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 525 PIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTLPILFGDK 568


>gi|166713436|ref|ZP_02244643.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 564

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 224



 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 1/151 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 403 RGIEVGHVFQLGSQYAQALQATVIDEGGKVAVMKMGCYGIGISRIVAAAIEQNHDDAGII 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +   L   G D   DD G + G+ FA  +LL
Sbjct: 463 WPAPMAPWQVVVCVINPKQDAQVVSAAQALLDELIAAGLDAALDDRGLRPGAMFADMELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G P +V+V  + ++    E + R     E++
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARTAAAAENL 553


>gi|219669716|ref|YP_002460151.1| prolyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|254782897|sp|B8FR28|SYP_DESHD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219539976|gb|ACL21715.1| prolyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 575

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/232 (47%), Positives = 153/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH+L++R G+I + + GIY++LPLG + L  +  I+REE
Sbjct: 1   MRVSQILNPTLREVPAEAEVVSHQLLVRAGLIRKSAAGIYTYLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGR+D YG+E++RL DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDAKGGQEVLLPIIQPAELWRESGRWDLYGQELMRLNDRHNREFCLGPTHEEIITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EIRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLAESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+     G   +HEF+VLA++GE  V    D     
Sbjct: 181 YTRIFTRCGLTFRPVEADAGAIGGTGGTHEFMVLAESGEAAVVYCPDCDYAA 232



 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 110/231 (47%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A    T V   +  +           D         + +         + N         
Sbjct: 340 APKNLTVVADLEVPLMAKAVCGANAEDKHYVDAVPEKDFRIDQILDLRMVNAGEPCPQCG 399

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           +    ARGIEVG +F  GTKYS  ++A F   +G +H   MG YGIG  R +AA IE ++
Sbjct: 400 SPLKEARGIEVGQVFKLGTKYSKALNAVFLDENGAEHPCVMGCYGIGVSRTMAAAIEQNN 459

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  GIIWP  +AP+ + ++ +   D   R+  E +Y  L K+G +   DD  E+ G +F 
Sbjct: 460 DKDGIIWPIPIAPYHVIVVPVNMKDDQVRETGEALYQELLKLGVEAVLDDRDERPGVKFK 519

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ADL+G+PL+V VGSK +++ +VE++ R TG  + + +EE+          
Sbjct: 520 DADLVGYPLRVTVGSKTLANGEVELRDRKTGEVQLVKVEELAGRIQGMIRE 570


>gi|110802298|ref|YP_699583.1| threonyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123047184|sp|Q0SQM4|SYT_CLOPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110682799|gb|ABG86169.1| threonine--tRNA ligase [Clostridium perfringens SM101]
          Length = 643

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 160/449 (35%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENPRDAEIASH-KLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L    E   +A+   H KL    G+        +G+   +P G + +  +   I +E
Sbjct: 223 KSELDAYLEALEEAKKRDHNKLGRELGIFTTDENVGQGLPLLMPKGARIIQTLQRWIEDE 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND--KAMIYGPTHEEVMTDIF 118
           + R G +    P +  +DL+  SG +D Y   M  L D     +     P        I+
Sbjct: 283 EQRRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDSEVFALRPMTCPFQYAIY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S   SYR+LP  F +    FR+E      G++R R+F + D +    TPE  +  +   
Sbjct: 343 NSTQHSYRDLPVRFAETSTLFRNESSGEMHGLIRVRQFTLADGHIV-CTPEQLEDEFKNT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +   LG            I  D+++ F    D   T+ + +         +   
Sbjct: 402 VDLVKYVMETLG------------IADDITYRFS-KWDPNNTEKYINDPEAWENTQNIMR 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +  + ++++    +     A      + +  +   +   +    I+      FG      
Sbjct: 449 EILNHLNID--FTEADDEAAFYGPKLDIQFKNVHGKEDTIITIQIDFALAERFG------ 500

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   DG K     +    IG      A++   + G    W   +AP +  ++ +  
Sbjct: 501 --MYYIDKDGEKKRPYIIHRSSIGCYERTLAMLIEKYAGALPTW---IAPVQAKVLPL-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L + G  V  D   E+IG +   A L   P  ++VG K   + +V
Sbjct: 554 -SDKYADYANEVVEELRRRGVRVEADHRAEKIGYKIREARLERTPYILVVGEKEAENKEV 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    M L + +N      +N 
Sbjct: 613 SVRSRKNGEEGAMPLADFVNRIVLEIANR 641


>gi|154249367|ref|YP_001410192.1| prolyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|171769336|sp|A7HKV2|SYP_FERNB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154153303|gb|ABS60535.1| prolyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 574

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 106/275 (38%), Positives = 159/275 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P L+E P DAE+ S +L+ R G I + + G+Y++LPLG++ L  +  I+REE
Sbjct: 1   MRFSQFYAPTLKEAPADAEVPSQELLTRAGFIRKIAAGVYTYLPLGRRVLLKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q A+LW +SGR++ YG EM++L DR+ +    GPTHEE++T + ++
Sbjct: 61  MDNIGANEILMPIIQPAELWKQSGRWEDYGPEMMKLKDRHGRDFTLGPTHEELVTFLVQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+  K+RDE+RPRFGV+R+REF+MKD YSF    E    +Y     +
Sbjct: 121 ELNSYKQLPITLYQMANKYRDEIRPRFGVLRAREFIMKDGYSFHSDWESLDETYKAHRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R+GLK   + A SG IGG+ SHEF+  ADTGE+ V   +              +
Sbjct: 181 YSNIMERIGLKYAVVEASSGAIGGNESHEFVAFADTGESNVLFCECGYAGNDERVPYTGE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            I     +               +   F  +P  K
Sbjct: 241 IIYDNEELKGMEKVYTPNVKTAQDVADFLGVPVRK 275



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F +     D+  +    ++   +     A   V  E     +      + +GIE+
Sbjct: 349 KGMKNFVVGGMEKDYHFVNV--NVDRDFKVDELADLIVTREGDPCPVCGKPLNAKKGIEL 406

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GTKYS  M + +   DG+     MG YG G  R + A++E  HD KGIIWP SV
Sbjct: 407 GHIFKLGTKYSEAMGSKYMDKDGQLKPFIMGCYGWGVSRTLGAIVEQLHDEKGIIWPLSV 466

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APF + +  + ++++      E++Y  L + G +V  DD     G +F  ADL+G P +V
Sbjct: 467 APFAVVITPV-SNNENLMKFSEELYNFLVEKGEEVLLDDRNISPGMKFNDADLIGIPFRV 525

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDM--SLEEVINYASHRFSNNRP 447
            VG K +S+  VEIK R TG +  +  +LEE+  +         P
Sbjct: 526 TVG-KALSEGMVEIKWR-TGQQFKVKATLEEIYEFLQKSKQEYDP 568


>gi|328907631|gb|EGG27395.1| proline--tRNA ligase [Propionibacterium sp. P08]
          Length = 585

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 104/245 (42%), Positives = 149/245 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + L  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVLRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  AGIGAQEVSFPALLASDPYKETGRWAEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDDAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S D     + +      D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVHSADGYAANVEAVRIAAPD 243

Query: 242 IISLN 246
            + ++
Sbjct: 244 PLPID 248



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   +RGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 413 PDGSGELHLSRGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 472

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG++WP  VAPF + ++       +  +   +I + L++VG +V  DD     G
Sbjct: 473 EGTCDEKGLVWPREVAPFDVQVLATGKGTDILDE-ATRIASELAEVGLEVLLDDRKASPG 531

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +FA +++LG P  V+VG + + D  VE++ R TG 
Sbjct: 532 VKFADSEILGVPTSVVVG-RGLKDGLVEVRDRATGE 566


>gi|18311304|ref|NP_563238.1| threonyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|110801319|ref|YP_697012.1| threonyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168205151|ref|ZP_02631156.1| threonyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168210374|ref|ZP_02635999.1| threonyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|168213233|ref|ZP_02638858.1| threonyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168216713|ref|ZP_02642338.1| threonyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182625789|ref|ZP_02953556.1| threonyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|22654117|sp|Q8XI02|SYT_CLOPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123148532|sp|Q0TMX8|SYT_CLOP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18145987|dbj|BAB82028.1| threonine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110675966|gb|ABG84953.1| threonyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170663286|gb|EDT15969.1| threonyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170711530|gb|EDT23712.1| threonyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170715283|gb|EDT27465.1| threonyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177908945|gb|EDT71432.1| threonyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182381219|gb|EDT78698.1| threonyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 643

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 160/449 (35%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENPRDAEIASH-KLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L    E   +A+   H KL    G+        +G+   +P G + +  +   I +E
Sbjct: 223 KSELDAYLEALEEAKKRDHNKLGRELGIFTTDENVGQGLPLLMPKGARIIQTLQRWIEDE 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND--KAMIYGPTHEEVMTDIF 118
           + R G +    P +  +DL+  SG +D Y   M  L D     +     P        I+
Sbjct: 283 EQRRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDSEVFALRPMTCPFQYAIY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S   SYR+LP  F +    FR+E      G++R R+F + D +    TPE  +  +   
Sbjct: 343 NSTQHSYRDLPVRFAETSTLFRNESSGEMHGLIRVRQFTLADGHIV-CTPEQLEDEFKNT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +   LG            I  D+++ F    D   T+ + +         +   
Sbjct: 402 VDLVKYVMETLG------------IADDITYRFS-KWDPNNTEKYINDPEAWENTQNIMR 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +  + ++++    +     A      + +  +   +   +    I+      FG      
Sbjct: 449 EILNHLNID--FTEADDEAAFYGPKLDIQFKNVHGKEDTIITIQIDFALAERFG------ 500

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   DG K     +    IG      A++   + G    W   +AP +  ++ +  
Sbjct: 501 --MYYIDKDGEKKRPYIIHRSSIGCYERTLAMLIEKYAGALPTW---IAPVQAKVLPL-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L + G  V  D   E+IG +   A L   P  ++VG K   + +V
Sbjct: 554 -SDKYADYANEVVEELRRRGVRVEADHRAEKIGYKIREARLERTPYILVVGEKEAENKEV 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    M L + +N      +N 
Sbjct: 613 SVRSRKNGEEGAMPLADFVNRIVLEIANR 641


>gi|71984184|ref|NP_001022033.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis
           elegans]
 gi|1711653|sp|P52709|SYTC_CAEEL RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3875006|emb|CAA93762.1| C. elegans protein C47D12.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 725

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 169/442 (38%), Gaps = 42/442 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +  + +E   RD      +  L     HQ S G   W P G    + +   IR++
Sbjct: 305 KQLKEWQKLQEEAAKRDHRKLGKEHDLF--FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQ 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P + +  LW  SG +  Y ++M ++    ++     P +      +F  
Sbjct: 363 YRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEKEE-FGLKPMNCPGHCLMFGH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              +Y  LPF F    +  R+E+     G+ R R F   DA+ F    +       +   
Sbjct: 422 MPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIF-CRQDQISEEIKQCLD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                + ++   +  +   + P G   + E    A+   T    +        P +    
Sbjct: 481 FLEYAYEKVFGFTFKLNLSTRPEGFLGNIETWDKAEADLTNALNASGRKWVLNPGDG--- 537

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  + D+L  N + +   ++    F    ++     
Sbjct: 538 -----------------AFYGPKIDITIQDALKRNFQCATIQLD----FQLPNQF----D 572

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++    G K   V +    +G++  + A++  S+ GK   WP  ++P +  +I +    
Sbjct: 573 LSYFDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV---H 626

Query: 359 QVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  RD    +  ++ + G ++ + ++ G+ +  Q   A L  F   +++G+K   +  V 
Sbjct: 627 ESVRDYANDVKKQIFEAGFEIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVN 686

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R   +R +++L+++I+   
Sbjct: 687 VRTRDNAVRGEVALDKLISKFR 708


>gi|156086662|ref|XP_001610740.1| threonyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154797993|gb|EDO07172.1| threonyl-tRNA synthetase, putative [Babesia bovis]
          Length = 736

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 152/445 (34%), Gaps = 35/445 (7%)

Query: 8   LPILQENPRDAEIASHKLMLRT-GMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   +    DA+   H+L+  T  + H    HS G   WLP G K  + +   +RE    
Sbjct: 311 LKAYERRIEDAKANDHRLLGTTLNLFHFDNIHSPGSCFWLPNGAKIYNRLVDFMRENYRL 370

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S +LW  SG YD+Y + M      ++        +      +F+    
Sbjct: 371 RGYQEVITPNIYSCELWKTSGHYDNYKENMYMFTV-DEAEWGMKGMNCPGHCLMFKHMNP 429

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  F    +  R+EL     G+ R R F   DA+ F  TPE        M     
Sbjct: 430 SYRQLPLRFADFGVLHRNELTGSLSGLTRVRRFQQDDAHIF-CTPEQISAEVLSMLKFID 488

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++     +    +  + P       E    A+ G               P +       
Sbjct: 489 DVYSLFNFEY-NFKLSTKPAKALGDDELWNKAEAGLQDALEKCGRPWTLNPGDG------ 541

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      +  L DSL    +     ++      F   Y    S   
Sbjct: 542 --------------AFYGPKIDVILLDSLEREHQCGTVQLDFNLPIRFNLGYRDKDSEDN 587

Query: 303 KG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G    V +     G++    A++     GK   W   ++P +++++ I       
Sbjct: 588 TDCKRGYSRPVIVHRAIFGSLERFIAIVIEHMKGKLPFW---LSPTQVAVLPI---SDKH 641

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   KIY +L  +G + + D     +  +  +     +   +I+G + V    V ++  
Sbjct: 642 LDYANKIYRKLLHLGYNCYVDSSANTMNKKIKLNQAQRYNYMLILGDREVETETVSVRAM 701

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +   E ++LE++    +    + +
Sbjct: 702 DSQDNEVLTLEQLYAKLADEAESYK 726


>gi|315302972|ref|ZP_07873693.1| prolyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628661|gb|EFR97073.1| prolyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 538

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/225 (50%), Positives = 148/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AIIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR+  YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWSDYGPELMRLKDRAARDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL+   + A+SG IGG  + EF+ L++ GE  +  S 
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGKETKEFMALSEIGEDTIAYSD 225



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 2/197 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 340 ENVRIFADNAVKDIVNAVAGANEDGFHYVNVNPTRDFEVTSYFDLRMIQVGDLSPDGQGV 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 400 IKFAEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++W   ++PF + LI +    +      E +Y  L + G  V  DD GE+ G +FA A
Sbjct: 460 NGLVWDKKISPFDLHLIPVNMKSEEQVAFAETLYVSLQQAGYSVLIDDRGERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVS 412
           DL+G PL++ VG K   
Sbjct: 520 DLIGLPLRITVGKKAAE 536


>gi|169347105|ref|ZP_02866047.1| threonyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169296788|gb|EDS78917.1| threonyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 643

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 160/449 (35%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENPRDAEIASH-KLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L    E   +A+   H KL    G+        +G+   +P G + +  +   I +E
Sbjct: 223 KSELDAYLEALEEAKKRDHNKLGRELGIFTTDENVGQGLPLLMPKGARIIQTLQRWIEDE 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND--KAMIYGPTHEEVMTDIF 118
           + R G +    P +  +DL+  SG +D Y   M  L D     +     P        I+
Sbjct: 283 EQRRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDSEVFALRPMTCPFQYAIY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S   SYR+LP  F +    FR+E      G++R R+F + D +    TPE  +  +   
Sbjct: 343 NSTQHSYRDLPVRFAETSTLFRNESSGEMHGLIRVRQFTLADGHIV-CTPEQLEDEFKNT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +   LG            I  D+++ F    D   T+ + +         +   
Sbjct: 402 VDLVKYVMETLG------------IADDITYRFS-KWDPNNTEKYINDPEAWENTQNIMR 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +  + ++++    +     A      + +  +   +   +    I+      FG      
Sbjct: 449 EILNHLNID--FTEADDEAAFYGPKLDIQFKNVHGKEDTIITIQIDFALAERFG------ 500

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   DG K     +    IG      A++   + G    W   +AP +  ++ +  
Sbjct: 501 --MYYIDKDGEKKRPYIIHRSSIGCYERTLAMLIEKYAGALPTW---IAPVQAKVLPL-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L + G  V  D   E+IG +   A L   P  ++VG K   + +V
Sbjct: 554 -SDKYADYANEVVEELRRRGVRVEADHRAEKIGYKIREARLERTPYILVVGEKEAENKEV 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    M L + +N      +N 
Sbjct: 613 SVRSRKNGEEGAMPLADFVNRIVLEIANR 641


>gi|309782526|ref|ZP_07677250.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918863|gb|EFP64536.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 580

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 135/390 (34%), Gaps = 45/390 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L+E    AE   H+ + R      I ++S G   W P G      +   +R     
Sbjct: 231 YLHMLEE----AEKRDHRKLGRELDLFHIDEYSPGTVFWHPKGWTLWQEIEQYMRRVYRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y + M  + +   +     P +      I++  IK
Sbjct: 287 NGYQEVKGPQILDKTLWEKTGHWDKYRENMF-ITESEKREYALKPMNCPGHILIYKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +     R+E      G+MR R F   D + F  T +  +           
Sbjct: 346 SYRDLPLRFGEFGACHRNEPSGGLHGIMRVRGFTQDDGHIF-CTEDMIQAEVTAFTTLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P     + E    A+    +   +       +P E   +   
Sbjct: 405 KVYKDFGFTEILYKLSTRPDKRIGTEESWDRAEAALAEGLRASGCEFEYLPGEGAFYGPK 464

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I                               K    R  + G I          + A F
Sbjct: 465 IEY---------------------------VLKDALGRQWQCGTI-QVDPNLPERLDAEF 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H  + +    +G++     ++   + G    W   ++P ++++++I       
Sbjct: 497 VGEDGARHRPIMLHRAIVGSLERFIGILIEQYAGALPTW---LSPVQVAVLSIT---DSH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            +  + +   L K G     D   E+IG +
Sbjct: 551 AEYAQSVAQSLQKQGFRAVVDLRNEKIGYK 580


>gi|326333619|ref|ZP_08199856.1| proline--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325948525|gb|EGD40628.1| proline--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 582

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 188/386 (48%), Gaps = 26/386 (6%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  F+  L+E+P DAE+ASHKL++R G I + + GIYSWLPLG + L  V  IIREE  
Sbjct: 1   MSTLFVRTLREDPADAEVASHKLLVRAGYIRRAAPGIYSWLPLGLRVLGKVEQIIREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G+ E+  P L   + +  +GR+  YG  + RL DR +   + GPTHEE+ T + +   
Sbjct: 61  SIGSQEVHFPALLPREPYEATGRWTEYGDGIFRLKDRKEADYLLGPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG + +Y     +Y+
Sbjct: 121 GSYKDLPLSIYQIQTKYRDEARPRAGLLRGREFIMKDSYSFDVTDEGLEAAYQAHRDAYV 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R+F RLG + + ++A SG +GG  S EF+ +++ GE     S       + +  T   + 
Sbjct: 181 RVFDRLGFEYVIVKATSGAMGGSASEEFLAVSEAGEDTFVRSPGGYAANVEAVTTLAPEP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           IS   +                + L D L +      R  E G            +  T 
Sbjct: 241 ISYEGV--PAAHAEDTPETPTIQTLVDHLNKAFPRDDRPWEAGDTL-------KNVLLTL 291

Query: 303 KGADGKDHYVQMGSYG---IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  DG    + +G  G   +   R+           +G + P  V P     + +K H  
Sbjct: 292 RHPDGTVEPLAVGLPGDRDVDIKRL-----------EGQLEPIEVEPMD--DVELKKHAS 338

Query: 360 VCRDAC-EKIYARLSKVGCDVFWDDM 384
           + +     ++    S+ G     D  
Sbjct: 339 LVKGYIGPEVLGEKSESGIRYLVDPR 364



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 3/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  G KY+  +       +GK   V MGSYGIG  R VAA+ E + D  G+ 
Sbjct: 419 RGIEMGHVFQLGRKYADALGLQVLDENGKLVTVTMGSYGIGVTRAVAAIAEGTLDEIGLA 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP +VAP+ + L+     D    +A   +   L   G DV +DD  +   G +F  A+L+
Sbjct: 479 WPRNVAPYDVHLVA-TGKDSAVFEAAATLAEELEAAGIDVLYDDRPKVSPGVKFKDAELI 537

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  V VG K + + K+E+K R +G + +++L + + + +   +
Sbjct: 538 GVPTIVTVG-KGLVEGKIEVKDRKSGEKTEVALADAVAHLTEVVA 581


>gi|71984192|ref|NP_001022034.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis
           elegans]
 gi|30145813|emb|CAD89723.1| C. elegans protein C47D12.6b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 684

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 169/442 (38%), Gaps = 42/442 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +  + +E   RD      +  L     HQ S G   W P G    + +   IR++
Sbjct: 264 KQLKEWQKLQEEAAKRDHRKLGKEHDLF--FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQ 321

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P + +  LW  SG +  Y ++M ++    ++     P +      +F  
Sbjct: 322 YRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEKEE-FGLKPMNCPGHCLMFGH 380

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              +Y  LPF F    +  R+E+     G+ R R F   DA+ F    +       +   
Sbjct: 381 MPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIF-CRQDQISEEIKQCLD 439

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                + ++   +  +   + P G   + E    A+   T    +        P +    
Sbjct: 440 FLEYAYEKVFGFTFKLNLSTRPEGFLGNIETWDKAEADLTNALNASGRKWVLNPGDG--- 496

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  + D+L  N + +   ++    F    ++     
Sbjct: 497 -----------------AFYGPKIDITIQDALKRNFQCATIQLD----FQLPNQF----D 531

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++    G K   V +    +G++  + A++  S+ GK   WP  ++P +  +I +    
Sbjct: 532 LSYFDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGK---WPFWLSPRQCKIITV---H 585

Query: 359 QVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  RD    +  ++ + G ++ + ++ G+ +  Q   A L  F   +++G+K   +  V 
Sbjct: 586 ESVRDYANDVKKQIFEAGFEIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVN 645

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R   +R +++L+++I+   
Sbjct: 646 VRTRDNAVRGEVALDKLISKFR 667


>gi|170575688|ref|XP_001893343.1| threonyl-tRNA synthetase, cytoplasmic [Brugia malayi]
 gi|158600735|gb|EDP37841.1| threonyl-tRNA synthetase, cytoplasmic, putative [Brugia malayi]
          Length = 685

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 170/454 (37%), Gaps = 54/454 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +  + +E    A    H+ + R       H  S G   W P G    + +   IR
Sbjct: 265 KQLKEWQKLQEE----AAKRDHRKIGRDQELYFFHPLSPGSAFWYPKGAHIYNTLCNFIR 320

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + ++ LW +SG ++ Y   M ++ D   +     P +      ++
Sbjct: 321 KEYRKRGFTEVISPNMYNSKLWEQSGHWEHYSDNMFKI-DIEKETFGLKPMNCPGHCLMY 379

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH---SY 174
               +++  LP  +    +  R+E+     G+ R R F   DA+ F    +  +      
Sbjct: 380 SHMPRTHNELPLRYADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRQDQVVEEIMGCI 439

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           + +  +YL +F   G     +   + P +G     E    A+    +   +        P
Sbjct: 440 DFLKYAYLDVF---GFTF-KLNLSTRPEVGYLGDIETWNAAEDKLREALNASGHKWELNP 495

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +                     A      +  + D+L    + +   ++    F    +
Sbjct: 496 GDG--------------------AFYGPKIDITIQDALRRLHQCATIQLD----FQLPVR 531

Query: 294 YSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +      ++   + +    V +    +G++  + A++  ++ GK   WP  ++P +  +I
Sbjct: 532 F----DLSYFDENNERQRPVMIHRALLGSIERMTAILAENYGGK---WPFWLSPRQAKVI 584

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +    +   D   K+   + + G +V +D D  + +  Q   A +  F   ++VG    
Sbjct: 585 TV---HESQNDYGRKVQQEIYEAGFEVEFDVDSSDTLNKQIRNAQIAQFNFILVVGPAEA 641

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +  V ++ R   +R ++ LE++I     RF N 
Sbjct: 642 RNGTVNVRTRDNAVRGEVKLEDLIEKFK-RFQNE 674


>gi|328710126|ref|XP_001950747.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like
           [Acyrthosiphon pisum]
          Length = 714

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 149/435 (34%), Gaps = 41/435 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A    H+ + R       H+ S G   + P G    + +   I+ E  + G  E
Sbjct: 304 EKFQEEAARRDHRKIGREQELFFFHELSPGSCFFQPKGAHIYNTLIEFIKSEYRKRGFQE 363

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +  LW  SG +  Y + M    D   +     P +      +F    +S+R L
Sbjct: 364 VVSPNIYNVKLWQTSGHWAHYAENMFSF-DVEKETYALKPMNCPGHCLMFDHRNRSWREL 422

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P       +  R+EL     G+ R R F   DA+ F  T +               ++  
Sbjct: 423 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTT-DQIGQEMMSSLDFLRHVYTV 481

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +R  + P       E    A+        S        P +            
Sbjct: 482 FGFTF-HLRLSTRPEKYLGELEMWENAEKQLADSLNSFGEPWTLNPGDG----------- 529

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      +  + D+L    + +   ++    F    +++L    +  G   
Sbjct: 530 ---------AFYGPKIDITISDALKRQHQCATIQLD----FQLPIRFNLNF-ISESGE-- 573

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   V +     G++  + A++  S  GK   WP  ++P +  +I +        +  EK
Sbjct: 574 KKRPVIIHRAIFGSVERMIAILTESFAGK---WPFWLSPRQAIVIPVGPQ---FDEYSEK 627

Query: 368 IYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +   + + G     D D G+ +  +   A L  +   ++VG K  + + V ++ R   + 
Sbjct: 628 VKKEIYEAGFMCDVDVDHGDTLNKKIRNAQLAQYNFILVVGDKEKTANTVNVRTRDNNVH 687

Query: 427 EDMSLEEVINYASHR 441
            + S+EE I      
Sbjct: 688 GEFSIEETIQRLQKL 702


>gi|309389227|gb|ADO77107.1| prolyl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 568

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 106/231 (45%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK +LP L+E+P +A++ SH+LMLR GM+ +H+ GIYS+LPLG K +  +  I R+ 
Sbjct: 1   MRMSKLYLPTLKEDPAEADVISHQLMLRAGMMRKHASGIYSYLPLGYKVIKKIEKIARKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + + A E+ +P +Q + +W +S R+D +G  M++  DR ++    GPTHEEV+TD+ R 
Sbjct: 61  MDNSEAQEVLLPIMQDSQIWKDSKRWDKFGPLMIKFNDRKNREFCLGPTHEEVVTDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQIQ K RDE+RPRFGVMR REF+MKDAYS D+   G   SY  M+ +
Sbjct: 121 EVRSYKDLPLNLYQIQTKVRDEIRPRFGVMRGREFIMKDAYSLDIDSAGLDKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF   GL+++ + A++G +GG  SHEF+VLAD+GE ++    D     
Sbjct: 181 YEKIFAECGLEAVSVEADTGAMGGKDSHEFMVLADSGEDEIAFCNDCNYAA 231



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 1/213 (0%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            I   N +     ++    +     +A    V + +      + K     GIEVGHIF  
Sbjct: 354 AIVGANEEDYHFKNVKVKRDFEVEAFADLRSVKSGERCPKCEKGKLDIKAGIEVGHIFKL 413

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GTKYS  M A +   +GK   + MGSYGIG  R+VAA IE ++D  GI WP ++AP++I 
Sbjct: 414 GTKYSENMDANYLDENGKAQPIVMGSYGIGITRLVAAAIEQNNDQYGIKWPKAIAPYQII 473

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +   D+V     E IY  L   G +V  DD  E+ G +F  ++L+G PL++ +GS+ 
Sbjct: 474 ILPLGNDDEVQT-KSEAIYQDLKAKGWEVLIDDRKERAGVKFNDSELIGIPLRLTIGSRS 532

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + +  VE   R   ++ ++ LE++       F+
Sbjct: 533 LKNGVVEAMTRENNMKTEIELEQLETKIEALFA 565


>gi|120612314|ref|YP_971992.1| prolyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|152074741|sp|A1TTD0|SYP_ACIAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120590778|gb|ABM34218.1| prolyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
          Length = 581

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFVSTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEYWQETGRFDKMGPELLRIRDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +          
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQSDYAA 231



 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 111/212 (52%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGT 292
              +  D         +        +D+ N    D  P+ K      RGIEVGH+FY GT
Sbjct: 369 CGANEVDFHMTGVNWGRDLPEPDVVADLRNVVAGDPSPDGKGTLAIERGIEVGHVFYLGT 428

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF G DGK  + +MG YGIG  R+ AA IE +HD +GIIWPD++APF + + 
Sbjct: 429 KYSRAMNATFLGEDGKPAFFEMGCYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVVC 488

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I        R A EK++A L   G DV  DD GE+ G+ FA  +L+G P +V++  + +
Sbjct: 489 PIGMDRSDEVRAAAEKLHADLLTAGVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGL 548

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + +VE +HR       ++  ++  +   R  
Sbjct: 549 KEGQVEYQHRRDAAATKVASADIFAFIKDRIK 580


>gi|330800299|ref|XP_003288175.1| threonyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325081805|gb|EGC35308.1| threonyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 713

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 166/433 (38%), Gaps = 38/433 (8%)

Query: 11  LQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            +   ++A +  H+ + R       H  S G   +LP G +  + +   IR E +  G  
Sbjct: 308 YENFMKEAALRDHRNIGRAQELFFFHPFSPGSAFFLPHGTRIYNKLVDFIRAEYHNRGFS 367

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P++ S  LW +SG +  Y + M  +   + +     P +      +F S  +SYR 
Sbjct: 368 EVISPSVFSQKLWEQSGHWAKYSENMFNIPV-DKETFSLKPMNCPGHCLMFGSRQRSYRE 426

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  F    +  R+EL     G+ R R+F   DA+ F  T +  ++  N        ++ 
Sbjct: 427 LPLRFADFGVLHRNELAGALTGLTRVRKFQQDDAHIF-CTVDMIENEINSCLEFMQHVYG 485

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G +   +   + P            A+    +            P +           
Sbjct: 486 IFGFEF-QLNLSTRPENFLGEISQWNEAEKSLEKALNRFGKPWQLNPGDG---------- 534

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                     A      + +++D L    + +   ++    F    ++ L   +     D
Sbjct: 535 ----------AFYGPKIDIQIYDCLKRAHQCATIQLD----FQLPIRFDLEYQSD-DATD 579

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   V +    +G++  + A++     GK   WP  V+P +  ++ +        +   
Sbjct: 580 VKKRPVIIHRAILGSVERMMAILMEHTAGK---WPFWVSPRQAIVVTVAKQ---HNEYGH 633

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+  ++S++G     D+  + IG +   A L  +   ++VG + + ++KV ++ R   +R
Sbjct: 634 KVAKQISELGYYCDIDESDKTIGKKVREAQLAQYNYILVVGQEEIDNNKVNVRTRDNVVR 693

Query: 427 EDMSLEEVINYAS 439
             +S+EE++   +
Sbjct: 694 GSISVEELVAEFA 706


>gi|257878529|ref|ZP_05658182.1| prolyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257882947|ref|ZP_05662600.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257894712|ref|ZP_05674365.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|293567720|ref|ZP_06679062.1| prolyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|294618726|ref|ZP_06698258.1| prolyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|294620760|ref|ZP_06699967.1| prolyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|257812757|gb|EEV41515.1| prolyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818605|gb|EEV45933.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257831091|gb|EEV57698.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|291589563|gb|EFF21369.1| prolyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291595039|gb|EFF26384.1| prolyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291599740|gb|EFF30750.1| prolyl-tRNA synthetase [Enterococcus faecium U0317]
          Length = 569

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 151/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +          T + 
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSYY 240



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 5/240 (2%)

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           EF  +   G  +     +  ++     +     +      ++  +      +  D+   +
Sbjct: 329 EFGSVGPVGVSDDVKVYADRYVQDLANAITGANETGFHYKNVNPERDFTVLSYEDLRFVQ 388

Query: 267 LFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+
Sbjct: 389 EGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D +GI WP  +APF + ++ +   D+       ++   ++K G +V  DD 
Sbjct: 449 LSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTSLTNELEEAMTKAGYEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DL+G P+++ VG K V D  VE+K + TG   ++  EE+ N      + 
Sbjct: 509 NERAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELANTLPILLNQ 567


>gi|89895282|ref|YP_518769.1| hypothetical protein DSY2536 [Desulfitobacterium hafniense Y51]
 gi|114152191|sp|Q24UG7|SYP_DESHY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89334730|dbj|BAE84325.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 575

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 110/232 (47%), Positives = 153/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH+L++R G+I + + GIY++LPLG + L  +  I+REE
Sbjct: 1   MRVSQILNPTLREVPAEAEVVSHQLLVRAGLIRKSAAGIYTYLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGR+D YG+E++RL DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDAKGGQEVLLPIIQPAELWRESGRWDLYGQELMRLNDRHNREFCLGPTHEEIITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EIRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLAESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+     G   +HEF+VLA++GE  V    D     
Sbjct: 181 YTRIFTRCGLSFRPVEADAGAIGGTGGTHEFMVLAESGEAAVVYCPDCDYAA 232



 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 110/231 (47%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A    T V   +  +           D         + +         + N         
Sbjct: 340 APKNLTVVADLEVPLMAKAVCGANAEDKHYVDAVPEKDFRIDQILDLRMVNAGEPCPQCG 399

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           +    ARGIEVG +F  GTKYS  ++A F   +G +H   MG YGIG  R +AA IE ++
Sbjct: 400 SPLKEARGIEVGQVFKLGTKYSKALNAVFLDENGAEHPCVMGCYGIGVSRTMAAAIEQNN 459

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  GIIWP  +AP+ + ++ +   D   R+  E +Y  L K+G +   DD  E+ G +F 
Sbjct: 460 DKDGIIWPIPIAPYHVIVVPVNMKDDQVRETGEALYQELLKLGVEAVLDDRDERPGVKFK 519

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ADL+G+PL+V VGSK +++ +VE++ R TG  + + +EE+          
Sbjct: 520 DADLVGYPLRVTVGSKTLANGEVELRDRKTGEVQLVKVEELAGRIQGMIRE 570


>gi|50959620|gb|AAH74887.1| TARSL2 protein [Homo sapiens]
          Length = 441

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 154/437 (35%), Gaps = 44/437 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 30  EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 89

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 90  VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 148

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 149 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 207

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 208 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 255

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 256 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 298

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 299 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 352

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   
Sbjct: 353 LQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNK 412

Query: 425 IREDMSLEEVINYASHR 441
           I  ++ +   I+   + 
Sbjct: 413 IHGEILVTSAIDKLKNL 429


>gi|309805191|ref|ZP_07699243.1| threonine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165425|gb|EFO67656.1| threonine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 461

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 163/436 (37%), Gaps = 37/436 (8%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D +   H+ + R   +     +   G+  W+P G      +   I +++   G   +  P
Sbjct: 52  DIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTP 111

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + D +  SG +  Y ++M    D  D  M+   P +      I+  HI+SYR LP  
Sbjct: 112 VLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIR 171

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++    +
Sbjct: 172 IAELGMMHRYEKSGALSGLQRVREMTLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDI 230

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T  + + D M            D + L  +  
Sbjct: 231 TDYYFRLSYR--------------DPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEA 276

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + +   +L  ++ +S   ++    F    +++L    ++ G DG++H
Sbjct: 277 --EGEAAFYGPKLDIQTKTALGNDETMSTIQLD----FMLPERFNL----SYVGKDGEEH 326

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M     +G M    A +   + G    W   +AP ++ +I +   +    +  + + 
Sbjct: 327 RPVMVHRGIVGTMERFIAYLTEIYKGAFPTW---LAPLQVKIIPVN--NDAHGEYAQNVK 381

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  
Sbjct: 382 DQLMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESK 441

Query: 430 SLEEVINYASHRFSNN 445
           +L E ++  S   ++ 
Sbjct: 442 ALSEFVSELSADVASY 457


>gi|257884339|ref|ZP_05663992.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|261207398|ref|ZP_05922084.1| prolyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289566680|ref|ZP_06447097.1| prolyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294613940|ref|ZP_06693875.1| prolyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|257820177|gb|EEV47325.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|260078289|gb|EEW65994.1| prolyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289161539|gb|EFD09422.1| prolyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291593215|gb|EFF24789.1| prolyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 569

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 151/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +          T + 
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSYY 240



 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 5/240 (2%)

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           EF  +   G  +     +  ++     +     +      ++  +      +  D+   +
Sbjct: 329 EFGSVGPVGVSDDVKVYADRYVQDLANAITGANETGFHYKNVNPERDFTVLSYEDLRFVQ 388

Query: 267 LFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+
Sbjct: 389 EGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD 
Sbjct: 449 LSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DL+G P+++ VG K V D  VE+K + TG   ++  EE+ N      + 
Sbjct: 509 NERAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELANTLPILLNQ 567


>gi|194014474|ref|ZP_03053091.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194013500|gb|EDW23065.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 565

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 159/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE  SH+L++R G I Q++ GIY +LPL  K + ++ +I+R+E
Sbjct: 1   MRQSLTFIPTLREVPADAEAKSHQLLVRAGFIRQNTSGIYHYLPLAHKVIQHIQSIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQ A++W ESGR+ +YG E++R+ DR+ +    GPTHEEV+T + RS
Sbjct: 61  MEKAGAAELLMPVLQQAEMWQESGRWYTYGPELMRMKDRHGREFALGPTHEEVITSLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  +PE    +YNKMF +
Sbjct: 121 EVKSYKKLPLTLYQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHSSPESLDDTYNKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  +F ++GL   P+ A+SG +GG  +HEF+ L++ GE  +  S 
Sbjct: 181 YSNVFSKVGLNFRPVIADSGAMGGKDTHEFMALSEVGEDTIAYSD 225



 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG +F  GT+YS  M AT+   +G+   + MG YGIG  R ++A++E  HD KGII
Sbjct: 405 KGIEVGQVFKLGTRYSESMDATYLDENGRAQPMIMGCYGIGISRTLSAIVEQHHDEKGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP++VAP+ + L+ +   +   ++  E +Y RL   G DV +DD  E+ G +FA +DL+G
Sbjct: 465 WPEAVAPYDLHLLALNMKNDAQKELAETLYERLEDEGFDVLFDDRQERAGVKFADSDLIG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            P+++  G +   +  VE+K R +G   ++S++E+I++   
Sbjct: 525 LPIRISCGKRS-EEGIVEVKFRKSGESHEVSVDELISFIRQ 564


>gi|69246859|ref|ZP_00604151.1| Prolyl-tRNA synthetase, bacterial [Enterococcus faecium DO]
 gi|257889274|ref|ZP_05668927.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|258615945|ref|ZP_05713715.1| prolyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560114|ref|ZP_05832292.1| prolyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293560203|ref|ZP_06676705.1| prolyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|314937502|ref|ZP_07844835.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942161|ref|ZP_07849015.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314947499|ref|ZP_07850914.1| prolyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951486|ref|ZP_07854535.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314992576|ref|ZP_07857994.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314995489|ref|ZP_07860589.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195040|gb|EAN09503.1| Prolyl-tRNA synthetase, bacterial [Enterococcus faecium DO]
 gi|257825634|gb|EEV52260.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260073949|gb|EEW62273.1| prolyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291605875|gb|EFF35307.1| prolyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313590323|gb|EFR69168.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313592868|gb|EFR71713.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596326|gb|EFR75171.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313599084|gb|EFR77929.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313643143|gb|EFS07723.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313646049|gb|EFS10629.1| prolyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 569

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 151/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +          T + 
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSYY 240



 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 5/240 (2%)

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           EF  +   G  +     +  ++     +     +      ++  +      +  D+   +
Sbjct: 329 EFGSVGPVGVSDDVKVYADRYVQDLANAITGANETGFHYKNVNPERDFTVLSYEDLRFVQ 388

Query: 267 LFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+
Sbjct: 389 EGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD 
Sbjct: 449 LSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DL+G P+++ VG K V D  VE+K + TG   ++  EE++N      + 
Sbjct: 509 NERAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELVNTLPILLNQ 567


>gi|47221603|emb|CAF97868.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 604

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/466 (17%), Positives = 155/466 (33%), Gaps = 41/466 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK  L ++++    + I  ++        +  S G   +LP G    + +   I+ E  R
Sbjct: 142 SKLRLQLIEDQTSGSSITVYRHDQELFFFNDVSPGSCFFLPKGAHIYNTLTDFIKGEYRR 201

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PTL S  LW  SG ++ Y   M  +           P +      +F   ++
Sbjct: 202 RGFTEVVTPTLYSTALWERSGHWEHYSDNMFTVTSEGSHTYALKPMNCPAHCLMFEQRVR 261

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S++ LP  +       R+EL     G+ R R F   DA+ F   PE  +           
Sbjct: 262 SWKELPLRWADFGALHRNELSGALGGLTRVRRFCQDDAHIFCA-PEQLETEIVSCLDFVR 320

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIV-------------------LADTGETQVFC 223
            ++   G     +   + P       E                       A+     +  
Sbjct: 321 HVYQVFGFSFHCL-LSTRPTPCLGEPEQWDNAEQGAAAGEEPAAVWPTLGAEPRRRSLLW 379

Query: 224 SKDFMDF---PIPSENT---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +K   +    P P        F    S +   E         S   + ++ D++    + 
Sbjct: 380 TKGEQEEDLGPGPGRRRSVGYFTSQSSPDEGEEGRQTRSCVLSPQIDIQIRDAIGRQHQC 439

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           +   ++    F    ++       + G DG+ H  V +    +G++  + A++  +  GK
Sbjct: 440 ATIQLD----FQLPLRF----DLQYVGPDGQLHRPVMIHRAVLGSLERMIAILAENFGGK 491

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVA 395
              WP  ++P ++ +I +    +        +       G  V  + D G  +  +   A
Sbjct: 492 ---WPLWLSPAQVMVIPVGGDSESYSKQVSGVVQEFRHAGFMVDLNSDQGATLNKKIRSA 548

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            L  +    +VG K      V ++ R          EEV+   +  
Sbjct: 549 QLSQYNYIFVVGEKESESRTVSVRSRGGKQLGRRPTEEVLTSLTQL 594


>gi|220905829|ref|YP_002481140.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862440|gb|ACL42779.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 610

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 167/452 (36%), Gaps = 48/452 (10%)

Query: 8   LPILQENPRDAEIASHKLMLR--TGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   Q    +A+   H+ + +     I       G+  W P G      +   +++EQ +
Sbjct: 190 LAEYQRRKEEAQRRDHRKLGKELGLFIFSDLVGPGLPLWTPKGTILRSTLEDFLKQEQLK 249

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDI 117
            G   +  P +   DL+  SG +  Y ++M  L   +++        +  P +      I
Sbjct: 250 RGYQPVVSPHIARVDLFKTSGHWQKYKEDMFPLMSEDEQERQSEVGFVMKPMNCPFHIQI 309

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++S ++SYR+LP    +    +R E     G + R R F + D++ F +TP      + K
Sbjct: 310 YKSELRSYRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPSQLDDEFLK 368

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F +L LK+   R        D         +  +T +  +            
Sbjct: 369 VVDLILSVFAQLQLKNFKARLSFRDPNSDKYIGSDQAWEKAQTAIRQA------------ 416

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                + +L     +     A      +    D+         R  ++G +      Y+L
Sbjct: 417 -----VETLGMDHFEGIGEAAFYGPKLDFIFQDA-------LEREWQLGTV---QVDYNL 461

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +   DG +   V +     G++  +  ++   + G   +W   +AP ++ L+ 
Sbjct: 462 PERFELEYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPEQVRLLT 518

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +            ++  ++  +G  V  D  G+++  +   A+    P+  ++G+K V  
Sbjct: 519 VGDD---QMPFARQVAEQMQALGVRVVIDTSGDRLPKKIRNAEKEKIPVMAVIGAKEVEA 575

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + I+ R  G    +S+ EV+   +    + 
Sbjct: 576 DSLSIRTRAAGELGVISVPEVVERLAKAIHDR 607


>gi|300743963|ref|ZP_07072983.1| proline--tRNA ligase [Rothia dentocariosa M567]
 gi|300380324|gb|EFJ76887.1| proline--tRNA ligase [Rothia dentocariosa M567]
          Length = 605

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 141/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REE
Sbjct: 3   LRLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR    M+  PTHEE+ T + + 
Sbjct: 63  MNAIGAQEVLFPALLPREPYEATNRWEEYGDNLFRLQDRKGADMLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +  EG   +Y     +
Sbjct: 123 LYSSYKDLPLYIYQIQNKYRDEARPRAGLLRGREFVMKDSYSFTVDDEGLNEAYEAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF+RLGL ++ + A+SG +GG  S EF+     GE     S       + +
Sbjct: 183 YQRIFNRLGLDTVIVTAQSGAMGGSRSEEFLHPTPVGEDTFVRSAGGYAANVEA 236



 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 263 HNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              +  D  P+        RGIE+GHIF  G KY+  +       +GK   V MGSYGIG
Sbjct: 423 CEVREGDPAPDGSGPLIAARGIEMGHIFQLGRKYAEALGLKVLDQNGKLQTVTMGSYGIG 482

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA+ E +HD KG+IWP ++AP  + ++ I   D    +  E + A L   G  V 
Sbjct: 483 VTRALAAIAEGNHDEKGLIWPRNLAPADVHIV-ITNKDAQSHEYAETLSAELEGAGVQVL 541

Query: 381 WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD      G +F  A+LLG P  +++G +   D  +E+K R +G   D+++ + +    
Sbjct: 542 LDDRLKTSPGVKFGDAELLGVPTILVIG-RGFKDGTLELKDRRSGEARDIAVSDAVREIL 600

Query: 440 HRFSN 444
               +
Sbjct: 601 AEIRS 605


>gi|311113213|ref|YP_003984435.1| proline--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310944707|gb|ADP41001.1| proline--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 605

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 141/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REE
Sbjct: 3   LRLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR    M+  PTHEE+ T + + 
Sbjct: 63  MNAIGAQEVLFPALLPREPYEATNRWEEYGDNLFRLQDRKGADMLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +  EG   +Y     +
Sbjct: 123 LYSSYKDLPLYIYQIQNKYRDEARPRAGLLRGREFVMKDSYSFTVDDEGLNEAYEAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF+RLGL ++ + A+SG +GG  S EF+     GE     S       + +
Sbjct: 183 YQRIFNRLGLDTVIVTAQSGAMGGSRSEEFLHPTPVGEDTFVRSAGGYAANVEA 236



 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 5/185 (2%)

Query: 263 HNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              +  D  P+        RGIE+GHIF  G KY+  +       +GK   V MGSYGIG
Sbjct: 423 CEVREGDPAPDGSGPLIAARGIEMGHIFQLGRKYAEALGLKVLDQNGKLQTVTMGSYGIG 482

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA+ E +HD KG+IWP ++AP  + ++ I   D    +  E + A L   G  V 
Sbjct: 483 VTRALAAIAEGNHDEKGLIWPRNLAPADVHIV-ITNKDAQSHEYAETLSAELEGAGVQVL 541

Query: 381 WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD      G +F  A+LLG P  +++G +   D  +E+K R  G   D+++ + +    
Sbjct: 542 LDDRLKTSPGVKFGDAELLGVPTILVIG-RGFKDGTLELKDRRNGEARDIAVSDAVREIL 600

Query: 440 HRFSN 444
               +
Sbjct: 601 AEIRS 605


>gi|292670562|ref|ZP_06603988.1| proline-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647728|gb|EFF65700.1| proline-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 570

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 149/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIR E
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEEIIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P LQ ++LW ESGR+ +YG EM+R+ DR+D+    GPTHEE++T + R 
Sbjct: 61  MEAVGGQEIMMPILQPSELWEESGRWGAYGAEMIRIKDRHDREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVLLYQIQDKFRDERRPRFGIMRSREFIMQDLYSFDEDIEGMNESYRKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C        
Sbjct: 181 YSNIFTRCGLDFRVVEADSGAIGGGRSEEFTVLAPEGESRIACCDACSYAA 231



 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 108/249 (43%), Gaps = 1/249 (0%)

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            A     GG       +    G   V       M   +   N      +++N   +    
Sbjct: 320 EAAIRAAGGSPGFMSPIGIRKGTHIVVDETAMRMHNAVSGANEADFHFLNVNPKRDFGEV 379

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A    V                +RGIE G IF  GTKYS  M ATF  A GK   +QM
Sbjct: 380 TVADIRLVAEGDECPVCGGGHLHISRGIEAGQIFALGTKYSEAMDATFLDAAGKAQPLQM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +AA IE +HD  GIIWP ++AP+++ ++ + A         E++Y  L  
Sbjct: 440 GCYGIGVGRTMAAAIEQNHDDSGIIWPRAIAPYEVVVVAVNAKVPEQLAYAEEVYEELRA 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G D   DD  E+ G +F   DL+G+P+++ VG K +    +E+K R TG   + + +  
Sbjct: 500 AGVDALLDDRRERAGVKFNDCDLIGYPVRIAVGPKTIESGSIEVKLRRTGELVNFARDTY 559

Query: 435 INYASHRFS 443
           +       +
Sbjct: 560 LKGVQDMLA 568


>gi|257898235|ref|ZP_05677888.1| prolyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293570616|ref|ZP_06681667.1| prolyl-tRNA synthetase [Enterococcus faecium E980]
 gi|257836147|gb|EEV61221.1| prolyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291609287|gb|EFF38558.1| prolyl-tRNA synthetase [Enterococcus faecium E980]
          Length = 569

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 151/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +          T + 
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSYY 240



 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 5/240 (2%)

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           EF  +   G  +     +  ++     +     +      ++  +      +  D+   +
Sbjct: 329 EFGSVGPIGVSDDVKVYADRYVQDLANAITGANETGFHYKNVNPERDFTVLSYEDLRFVQ 388

Query: 267 LFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+
Sbjct: 389 EGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD 
Sbjct: 449 LSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DL+G P+++ VG K V D  VE+K + TG   ++  EE+ N      + 
Sbjct: 509 NERAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELANTLPILLNQ 567


>gi|303258207|ref|ZP_07344214.1| proline--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|302858960|gb|EFL82044.1| proline--tRNA ligase [Burkholderiales bacterium 1_1_47]
          Length = 582

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+   +E P DAEI S KLMLR GMI + + G+Y+++P+G ++L  +  I+REE
Sbjct: 1   MRAKQFFISTQKEAPADAEIVSQKLMLRAGMIRKLAAGVYNYMPMGLRSLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P +Q A+LW E+GR+  YG E+LR  DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAIELLMPIVQPAELWQETGRWQKYGAELLRFKDRHDRDFVLQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  FYQIQ KFRDE RPRFGVMR R+F+MKDAYSFD T E +  SY+KMF +
Sbjct: 121 EIKSWRQLPVNFYQIQTKFRDERRPRFGVMRGRDFVMKDAYSFDRTAEDAGKSYDKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    +RA+SG IGG  S EF V+ADTGE  +   
Sbjct: 181 YCRIFDRLGLVYRAVRADSGSIGGSRSQEFQVIADTGEDLIVFC 224



 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 3/184 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGH+F+ G KYS PM+AT+   +GK   +QMG YGIG
Sbjct: 397 RNVVEGDVSPDGKGTLKMQRGIEVGHVFFLGDKYSAPMNATYLDENGKPQLLQMGCYGIG 456

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R++ A IE  HD KGIIWPDS+APF + +  +     +  + A  ++Y RL + G DV
Sbjct: 457 ISRLLGAAIEQGHDDKGIIWPDSIAPFTVVICPVGYDKSEEVQKASNELYGRLREAGIDV 516

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD G + G  FA  +L+G P +V +G + + + +VE  HR     E++ + E+ +   
Sbjct: 517 ILDDRGLRPGVMFADWELIGVPHRVTIGDRGLKNGEVEYAHRGDLQNENVPVSEIADKLI 576

Query: 440 HRFS 443
            +  
Sbjct: 577 AKIK 580


>gi|325295715|ref|YP_004282229.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066163|gb|ADY74170.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 576

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P ++E+P DAEI SHKL++R G I + + G+Y  LPLG K L  +  +IREE
Sbjct: 1   MRFSRAFIPTMKESPADAEIPSHKLLIRAGFIRKKASGLYDILPLGVKVLLKIEKVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +  A+LW+ESGR+D YGKEM++  DR+D+    GPT EE++TD+ R 
Sbjct: 61  MNKAGAQEVILPIMHPAELWIESGRWDVYGKEMIKFKDRHDRDYALGPTAEEMITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQI  KFRDE+RPRFG+MR+REF+MKDAYSF  + E ++  Y  M+ +
Sbjct: 121 EVKSYKDLPLNLYQIGRKFRDEIRPRFGLMRAREFIMKDAYSFHASNEDAEREYWNMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF ++GL    + A++G IGG  SHEF+V+ADTGE ++   +      
Sbjct: 181 YSRIFRKMGLVFKAVEADTGEIGGKFSHEFMVIADTGEGKLVYCEKCGYAA 231



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 115/235 (48%), Gaps = 3/235 (1%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L+  G      +   +   +       +    L ++  +         D    K  D  P
Sbjct: 335 LSPVGLKIPVYADYSVVSMVNFVAGAGEKDYHLKNVNWERDFEVTEFVDFAEVKGEDPCP 394

Query: 273 EN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +     +  RGIEVGHIF  GTKYS  M+ATF   DGK+  + MG YGIG  RV+AA +E
Sbjct: 395 KCAAPLIEKRGIEVGHIFKLGTKYSQAMNATFVDEDGKEKPMVMGCYGIGVTRVMAAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            ++D  GIIWP  +APF++ +I +    +   +  E IY  L K G DV  DD   + G 
Sbjct: 455 QNYDENGIIWPVEIAPFEVIVIPVNVKKEEIIETAENIYDELQKNGFDVAIDDRNARPGF 514

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +F  ADL+G P Q+IVG K   +  VEIK R TG R ++++ +V+          
Sbjct: 515 KFKDADLIGIPYQIIVGKK-AGEGVVEIKVRKTGERFEIAVNKVVEKIGELVRGK 568


>gi|302339715|ref|YP_003804921.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636900|gb|ADK82327.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 585

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 156/450 (34%), Gaps = 39/450 (8%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +L  L+E   RD      +L L + +  +   G+  W P G +    +    ++E
Sbjct: 172 KELRLYLKHLEEMEKRDHRKLGRELDLFS-LHEEAGPGLVYWHPKGARIRHQIETFWKDE 230

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +  + LW  SG  D Y + M      +       P +      I+++
Sbjct: 231 HFKNGYELLYTPHVGKSWLWETSGHLDFYAEGMYPEMVMDKANYYAKPMNCPFHIMIYKT 290

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +  SYR LPF + ++   +R E      G+MR R F   DA+ F  TPE  +    ++  
Sbjct: 291 NKHSYRELPFRWAELGTVYRYEKSGTLHGLMRVRGFTQDDAHIF-CTPEQVEDEILEVLR 349

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +    G   I     + P       E   LA+    +   ++              
Sbjct: 350 FSLHMLRAFGFSDIQAYLSTRPEKAVGDPEQWKLAEASLQKAIEAEGLAYEVDEGGG--- 406

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D+L  + ++S    +      FG        
Sbjct: 407 -----------------AFYGPKIDLKVKDALGRSWQLSTVQFDFNEPKRFG-------- 441

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            TF   DGK+     +    +G++     V+   + G   +W   ++P ++ +I +    
Sbjct: 442 MTFVDHDGKEKQPYMVHRALLGSIERFFGVLIEHYGGAFPVW---LSPVQVQVIPVAP-- 496

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  + +   L +       D    ++ ++   A     P  +I+G K      V +
Sbjct: 497 -AFEAYAKSVETELRRHDLRADVDLSDSRMNAKIRNAQKEKIPYMLILGEKEQESRSVSV 555

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + R       ++L+E I       ++   V
Sbjct: 556 RKRNGEQVNGLALDEFIAQTLKIIASKENV 585


>gi|52080260|ref|YP_079051.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52785637|ref|YP_091466.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319645960|ref|ZP_08000190.1| prolyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|81825303|sp|Q65JJ1|SYP_BACLD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52003471|gb|AAU23413.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52348139|gb|AAU40773.1| ProS [Bacillus licheniformis ATCC 14580]
 gi|317391710|gb|EFV72507.1| prolyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 572

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 153/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K +  + +I+REE
Sbjct: 1   MRQSRTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLANKVIHKIQSIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T I R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHSSAESLDETYNDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F R GL   P+ A+SG +GG  +HEF+ L+D GE  +  S       
Sbjct: 181 YTNVFTRCGLNFRPVIADSGAMGGKDTHEFMALSDVGEDTIAYSDQSSYAA 231



 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 4/229 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E ++F           +   +  D    N +     A     +D+   +  D  P+ K  
Sbjct: 341 EIEIFADFAVKAMANAAAGANKTDYHYQN-VNISRDAHNVTFADLRFIQEGDPSPDGKGT 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIEVG +F  GT+YS  M AT+   +G+   + MG YGIG  R ++A++E  HD 
Sbjct: 400 IRFAKGIEVGQVFKLGTRYSEAMDATYLDENGRAQPMLMGCYGIGISRTLSAIVEQHHDD 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           KG+IWP  V P+ + ++ +   +       EK+Y      G DV +DD  E+ G +FA +
Sbjct: 460 KGLIWPLEVTPYDLHILALNMKNDAQVQLAEKLYEEFKANGYDVLFDDRAERAGVKFADS 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           DL+G P+++ VG +   +  VE+K R TG   +++ +E+ ++   +  +
Sbjct: 520 DLIGLPIRITVGKR-ADEGVVEVKIRKTGESFEIAADELFDFIEKQVKS 567


>gi|253576294|ref|ZP_04853624.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844187|gb|EES72205.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 571

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/232 (51%), Positives = 152/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+   P L+E P DAE ASH+ +LR G I Q + GIYS+LPLG+K L  +  I+REE
Sbjct: 1   MRQSRLLSPTLREAPSDAEAASHQHLLRAGYIRQLAAGIYSYLPLGRKVLLRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW  SGRY+ YG E++R  DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRAGAQELLLPAMQPAELWQRSGRYERYGPELIRFKDRHDREFALGPTHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++R REFLMKDAYSFD    G   +Y  M  +
Sbjct: 121 EVNSYRQLPLTVYQIQTKFRDERRPRFGLLRGREFLMKDAYSFDTDWTGLDRAYQSMVSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R GLK   + A+ G IGG+  +HEF+ LAD GE  V    +     
Sbjct: 181 YEKIFRRCGLKFRAVEADPGTIGGEGGTHEFMALADIGEDVVAVCGNCDYAA 232



 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/194 (37%), Positives = 105/194 (54%), Gaps = 4/194 (2%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +      P A+  D  N    D+ P  K       RGIEVGH+F  GT+YS  + A F  
Sbjct: 373 VCPTRDVPEASIGDFRNVVNGDACPRCKEGRLQLLRGIEVGHVFKLGTRYSEQLGAVFLD 432

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           A G    + MG YGIG  R+++A+ E  HD  G+IWP S+AP+++ +I I   + +  + 
Sbjct: 433 AQGHQQPMIMGCYGIGLSRLMSAIAEQHHDEHGLIWPVSIAPYQVHIIPISVTNPLQMEL 492

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++Y +L++ G DV  DD  E+ GS+F  ADL+G P +VI+G K     +VE   R   
Sbjct: 493 ALQLYEKLTQAGIDVLLDDRDERPGSKFHDADLIGIPYRVIIG-KSAEQGQVEWVERNIM 551

Query: 425 IREDMSLEEVINYA 438
            RE +SLEE I   
Sbjct: 552 KRELISLEEAIQRI 565


>gi|116075451|ref|ZP_01472711.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116067648|gb|EAU73402.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 609

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 144/436 (33%), Gaps = 36/436 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGTDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M      +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYSESMFGPMVVDEREYQLKPMNCPFHVLTYASTLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L PE       ++     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILRILDLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            K+  +   + P           LA  G  +    K +                      
Sbjct: 381 FKNYEINLSTRPEKSIGDDAVWDLATKGLIEALERKGWDYKVDEGGG------------- 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  A      + K+ D++    + S   ++      F   Y    S+       K 
Sbjct: 428 -------AFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFKLDYVAADSS-------KQ 473

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +     G++     ++  ++ G    W   +AP +I L+ +       +   E + 
Sbjct: 474 RPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT---DEVQSYAESLC 527

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G     D  GE++G      + +  P+  ++G+K    +   ++ R  G    +
Sbjct: 528 DQLKAAGVRASVDRSGERLGKLIRTGEKMKIPVLAVIGAKEAEQASASLRSRRDGDLGLV 587

Query: 430 SLEEVINYASHRFSNN 445
             + +I  A     N 
Sbjct: 588 GADALIEAARQANQNR 603


>gi|300863511|ref|ZP_07108463.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300338467|emb|CBN53605.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 608

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 167/451 (37%), Gaps = 46/451 (10%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + +    +E  R D      +L L          G+  W P G      +   +++EQ
Sbjct: 187 QLQEYQRRKEEALRRDHRKLGKELGLFI-FADVVGPGLPLWTPKGTILRSILEDFLKQEQ 245

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMT 115
            + G + +  P +   DL+  SG +  Y ++M  +   ++++       +  P +     
Sbjct: 246 VKRGYLPVVTPHIGRVDLFKTSGHWQKYKEDMFPMMAEDEESAKAEQGFVLKPMNCPFHI 305

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSY 174
            I++S ++SYR LP    +    +R E     G + R R F + D++ F +TPE     +
Sbjct: 306 QIYKSELRSYRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDAEF 364

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +    L +F  L LK+   R                  D    +   S +  +    +
Sbjct: 365 LSVVDLILSVFKSLQLKNFKARLSFR--------------DPTSDKYMGSDEVWEQSQGA 410

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                + +           A Y    D       D          R  ++G +      Y
Sbjct: 411 IRRAVETLGMNYFEGIGEAAFYGPKLDFIFSDALD----------REWQLGTV---QVDY 457

Query: 295 SLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP      +   DG +   V +     G++  +  ++   + G   +W   +AP ++ L
Sbjct: 458 NLPERFDLEYVAEDGTRKRPVMIHRAPFGSLERLIGILIEEYAGDFPVW---LAPIQVRL 514

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +           +++ A++  +G     D   E++G     A+    P+  IVG+K V
Sbjct: 515 LPVSND---FLPFAQEVAAKMRILGIRAEADVSSERLGKLIRNAEKDKIPVMGIVGAKEV 571

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + + I+ R +G    ++++EVIN      
Sbjct: 572 ESNSLSIRTRASGELGMIAVDEVINRLKSAI 602


>gi|331000280|ref|ZP_08323964.1| proline--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|329572446|gb|EGG54099.1| proline--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 582

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+   +E P DAEI S KLMLR GMI + + G+Y+++P+G ++L  +  I+REE
Sbjct: 1   MRAKQFFISTQKEAPADAEIVSQKLMLRAGMIRKLAAGVYNYMPMGLRSLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P +Q A+LW E+GR+  YG E+LR  DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAIELLMPIVQPAELWQETGRWQKYGSELLRFKDRHDRDFVLQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  FYQIQ KFRDE RPRFGVMR R+F+MKDAYSFD T E +  SY+KMF +
Sbjct: 121 EIKSWRQLPVNFYQIQTKFRDERRPRFGVMRGRDFVMKDAYSFDRTAEDAGKSYDKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    +RA+SG IGG  S EF V+ADTGE  +   
Sbjct: 181 YCRIFDRLGLVYRAVRADSGSIGGSRSQEFQVIADTGEDLIVFC 224



 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 3/184 (1%)

Query: 263 HNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            N    D  P+ K      RGIEVGH+F+ G KYS PM+AT+   +GK   +QMG YGIG
Sbjct: 397 RNVVEGDVSPDGKGTLKMQRGIEVGHVFFLGDKYSAPMNATYLDENGKPQLLQMGCYGIG 456

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDV 379
             R++ A IE  HD KGIIWPDS+APF + +  +     +  + A  ++Y RL + G DV
Sbjct: 457 ISRLLGAAIEQGHDDKGIIWPDSIAPFTVVICPVGYDKSEEVQKASNELYGRLREAGIDV 516

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD G + G  FA  +L+G P +V +G + + + +VE  HR     E++ + E+ +   
Sbjct: 517 ILDDRGLRPGVMFADWELIGVPHRVTIGDRGLKNGEVEYAHRGDLQNENVPVTEIADKLI 576

Query: 440 HRFS 443
            +  
Sbjct: 577 AKIK 580


>gi|170078264|ref|YP_001734902.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|226701348|sp|B1XP53|SYP_SYNP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169885933|gb|ACA99646.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 601

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P DAEI SHKL+LR G I +  +GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQSLFVTLREDPADAEIPSHKLLLRAGYIRRIGRGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A++W ESGR+D+Y +    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNATGAQETLLPQLQPAEIWQESGRWDTYTQAEGIMFSLRDRLDGELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPQHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHASEECLKKTYADM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  +  R GL+   + A+SG IGG  S EF++LAD GE ++  ++D     
Sbjct: 181 DQAYRNMLRRCGLQFRAVEADSGAIGGSGSQEFMILADAGEDEILYTEDEKYAA 234



 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 1/171 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIE GHIF  GTKYS  M ATF   +GK+H + MG YG+G  R+  A +
Sbjct: 425 HDPTQILQTARGIEAGHIFQLGTKYSEAMGATFTDENGKEHPLVMGCYGVGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+   ++      +    A EK+YA L+  G +   DD  E+ G
Sbjct: 485 EQSYDENGIIWPVAIAPYHAVVVVPNVKSEEQMAAAEKLYADLNAAGVETILDDRNERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +F  A+L+G P +V+ G K + D KVE+  R  G R+D+ L+ V+    +
Sbjct: 545 VKFKDAELIGIPFRVVTG-KSLKDGKVEVVRRKEGDRQDLDLDAVVATLKN 594


>gi|310821380|ref|YP_003953738.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394452|gb|ADO71911.1| Threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 642

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 142/445 (31%), Gaps = 46/445 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L     H  + G   W P G      ++  +R    
Sbjct: 234 LQEYLTRIEESKKRDHRKLGKELDLF--HFHPFAPGSAFWSPKGTTLYQTLSQWMRRLTA 291

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRS 120
            TG +E+  P + +  LW  SG +  Y + M  + D    +      P +       F  
Sbjct: 292 ETGYVEIKTPLMFNKGLWEASGHWGKYKENMFLVLDNESGEHDFSLKPMNCPSHHLYFGF 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP   +   +  R+E     G + R R+F   DA+ +  T +       +   
Sbjct: 352 KRHSYRDLPLRLHTQDVLHRNEAAGSLGGLTRVRQFAQDDAHIY-CTEDQIGDEVRRFVK 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++ +GLK    +  + P            A++    V  +        P E   +
Sbjct: 411 LLDHVYNAVGLKY-SAKFSTRPEQRLGEDALWDRAESALEGVLKTLGVPYEVKPGEGAFY 469

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLP 297
              I  +                                 R  ++G I      Y  +  
Sbjct: 470 GPKIDFDV---------------------------SDSIGRKWQLGTI---QLDYLAAQR 499

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G D  +H  V +     G+     A++     G    W   +AP +  L+ +  
Sbjct: 500 FDLKYIGEDNAEHRPVVLHRAIYGSFERFIAILIEHFAGAFPAW---LAPIQAVLVTVAD 556

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   K+  +L   G  V  DD G+ + ++     +   P  +++G   V    V
Sbjct: 557 R---QLDYARKVRDQLRAKGFRVELDDRGQSLNAKIREWQIQKLPFTLVIGDNEVEAGGV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
             +       + M LE+     S  
Sbjct: 614 APRRYGGEDLKSMKLEDFEALLSKE 638


>gi|163814284|ref|ZP_02205673.1| hypothetical protein COPEUT_00435 [Coprococcus eutactus ATCC 27759]
 gi|158449919|gb|EDP26914.1| hypothetical protein COPEUT_00435 [Coprococcus eutactus ATCC 27759]
          Length = 587

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 153/433 (35%), Gaps = 36/433 (8%)

Query: 18  AEIASHKLMLR---TGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           A+   H+ + +     M+     +G+  +LP G      +   I+ ++ + G + +  P 
Sbjct: 179 AKERDHRKIGKDMQLFMVDDLVGRGLPMFLPKGYTVWQELENYIKRKERKLGYLHVMTPC 238

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +L+  SG +D Y   M    +   ++ +  P +      I+ + + SY++LP    
Sbjct: 239 VGTVNLYKTSGHWDHYKDNMFPAMEMEGESFVLRPMNCPHHMMIYANKMHSYKDLPIRIA 298

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-K 191
           +I   FR E      G+ R R F   D++ F +TP+  +  +  +       +   G+  
Sbjct: 299 EIAHDFRFEASGTLKGIERGRHFCQNDSHIF-VTPDQIEEEFAGVVKLIFDTYKDFGITD 357

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              + +   P      H+   + +  E  +          +     D+ + I        
Sbjct: 358 YRCVLSLRDPEDKVKYHDDDEMWNKAENALRR-------VLDDIGIDYTEEIGEA----- 405

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                A      +  +  ++     +S   ++    F    K+       +   DG+   
Sbjct: 406 -----AFYGPKLDVNVKPAVGNEYTLSTCQLD----FCLPAKF----DLKYIDKDGEKKT 452

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++    A I     G    W   +AP ++ ++ +K  ++       K+  
Sbjct: 453 PVVLHRAILGSLDRFMAYILEETKGNLPTW---LAPVQVRVMPVKTDNEDLMAYAHKVVD 509

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +   V  DD  E++G +     +   P  +++G     +  V  +         + 
Sbjct: 510 ALDAIDVRVELDDRAEKLGYRMREGQVQKVPYLLVIGFNEAENGTVSYRLHGEADTTVLP 569

Query: 431 LEEVINYASHRFS 443
           L+E +        
Sbjct: 570 LDEFVQKIDTEIK 582


>gi|88608148|ref|YP_506185.1| threonyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|123763729|sp|Q2GEB1|SYT_NEOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88600317|gb|ABD45785.1| threonyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 637

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 152/434 (35%), Gaps = 45/434 (10%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+ + +T     + + ++G   W   G      +   IR +    G  E+  P 
Sbjct: 240 EAKKRDHRAIGKTMELFHLQEEAQGQVFWHENGFILYRVLENYIRNKLKTHGYREVKTPL 299

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW  SG +  + + M  +   +D      P +     ++++  +KSYR+LP    
Sbjct: 300 VYNKCLWERSGHWSKFKENMF-VIRSDDGEFSLKPMNCPAHIEVYKQSLKSYRDLPLRLA 358

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +  +  R+E      G+MR R F+  DA+ F  TP+               ++  LG   
Sbjct: 359 EFGMCHRNEASGALHGLMRVRGFVQDDAHIF-CTPQQICDETIAFCGLLKEVYRDLGFTE 417

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           + +R    P     + E    A+            +    P E   +   I    +    
Sbjct: 418 VEVRFSDRPEVRLGNDETWDKAEIALKSAMDKAGLIYTLNPGEGAFYGPKIEFVLVD--- 474

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKD- 309
                                      R  + G        + LP  + AT+   +GK  
Sbjct: 475 ------------------------ALKRKWQCGT---LQVDFVLPERLDATYIDHEGKKQ 507

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H V +    +G       ++   +DGK  +W   +AP +++++ I    +   +  + + 
Sbjct: 508 HPVMLHRAILGTFERFLGILIEHYDGKFPLW---LAPTQVAVLTIT---EKVEEYAKSLL 561

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             LSK G     D   ++I  +         P+  I+G      + V ++   +   E  
Sbjct: 562 NHLSKTGIRAVSDFSNQRIDYKIRYHTTRRVPILWIIGRIEEKSNSVTVRRMGSSESEVK 621

Query: 430 SLEEVINYASHRFS 443
           +++  +      F+
Sbjct: 622 TVDTALGDILREFN 635


>gi|122879049|ref|YP_199448.6| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|162319805|ref|YP_449766.2| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578630|ref|YP_001915559.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|114152279|sp|Q2P7I5|SYP_XANOM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152280|sp|Q5H4Q7|SYP_XANOR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701357|sp|B2SPG9|SYP_XANOP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188523082|gb|ACD61027.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 564

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 224



 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 403 RGIEVGHVFQLGSQYAQALQATVIDEGGKVAVMKMGCYGIGISRIVAAAIEQNHDDAGII 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +   L   G D   DD G + G+ FA  +LL
Sbjct: 463 WPAPMAPWQVVVCVINPKQDAQVVSAAQALLDELIAAGLDAALDDRGLRPGAMFADMELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P +V+V  + ++    E + R     E++    + +  
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARTAAAAENLDKAGLFSRL 562


>gi|282854645|ref|ZP_06263980.1| proline--tRNA ligase [Propionibacterium acnes J139]
 gi|282582227|gb|EFB87609.1| proline--tRNA ligase [Propionibacterium acnes J139]
          Length = 585

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 102/245 (41%), Positives = 148/245 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ANIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPD 243

Query: 242 IISLN 246
            + ++
Sbjct: 244 PLPID 248



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R 
Sbjct: 408 EGDLAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRA 467

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD 
Sbjct: 468 VAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDR 526

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 527 KASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576


>gi|157363113|ref|YP_001469880.1| prolyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166980167|sp|A8F3T2|SYP_THELT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157313717|gb|ABV32816.1| prolyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 575

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 101/227 (44%), Positives = 150/227 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ + P L+E P DAE+ SH L+ R G I + + G+YS+LPL ++ L  + AI+R+E
Sbjct: 1   MKFSQLYAPTLKEAPADAEVISHALLYRAGFIRKIAAGVYSYLPLAKRTLSKIEAIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+S+P +Q A+LW  +GR+D YG EM++L DR+++    GPTHEEV T + + 
Sbjct: 61  MNEIGAQEVSMPVIQPAELWKTTGRWDDYGPEMMKLKDRHERDFTLGPTHEEVFTHMVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  K+RDE+RPRFG++R+REF+MKD YSF  + +    +Y     +
Sbjct: 121 ELRSYKQLPLFLYQIGPKYRDEIRPRFGLLRAREFIMKDGYSFHDSDQSLNETYEACKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y +I  ++GLK I + A SG IGG+ SHEF+  A  GET +   +  
Sbjct: 181 YRKITEKIGLKYIIIEAASGAIGGNESHEFVSFAPVGETNLLKCEKC 227



 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R   G IG     +  V+AD G       K   +  +     D+  I +         +
Sbjct: 326 FRVPIGFIGPVGIEKVHVVADCG------IKYMKNVVVGGMKKDYHYINANVGRDFSPDS 379

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                    N+     +   +   ++GIE+  IF  GTKYS  M+A +    G+     M
Sbjct: 380 YTDLRVVQPNDPC--PVCGEQLTGSKGIEIAQIFKLGTKYSKAMNALYMDDKGEVKPFIM 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YG G  R +AA++E  HD  GI+WP SVAPF++ +  + A DQ  R   +K+Y  L  
Sbjct: 438 GCYGWGISRTMAAIVEQLHDEDGILWPRSVAPFELIITVVSAQDQDQRIFAQKLYNSLLS 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              DV  DD     G +F  ADL+GFPL++ VG K + +  VE+K R +     +S E
Sbjct: 498 SEIDVLLDDRDISPGMKFKDADLIGFPLRITVG-KSLKEGMVELKSRNSSKSIKVSAE 554


>gi|227551759|ref|ZP_03981808.1| proline--tRNA ligase [Enterococcus faecium TX1330]
 gi|227179064|gb|EEI60036.1| proline--tRNA ligase [Enterococcus faecium TX1330]
          Length = 569

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 151/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +          T + 
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSYY 240



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 5/240 (2%)

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           EF  +   G  E     +  ++     +     +      ++  +      +  D+   +
Sbjct: 329 EFGSVGPIGVSEDVKVYADRYVQDLANAITGANETGFHYKNVNPERDFTVLSYEDLRFVQ 388

Query: 267 LFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+
Sbjct: 389 EGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD 
Sbjct: 449 LSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DL+G P+++ VG K V    VE+K + TG   ++  EE+ N      + 
Sbjct: 509 NERAGVKFADSDLIGCPIRITVGKKAVE-GIVEVKIKKTGEMVEVRKEELANTLPILLNQ 567


>gi|257887080|ref|ZP_05666733.1| prolyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257895645|ref|ZP_05675298.1| prolyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293377744|ref|ZP_06623933.1| proline--tRNA ligase [Enterococcus faecium PC4.1]
 gi|257823134|gb|EEV50066.1| prolyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257832210|gb|EEV58631.1| prolyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|292643744|gb|EFF61865.1| proline--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 569

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 151/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +          T + 
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSYY 240



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 5/240 (2%)

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           EF  +   G  E     +  ++     +     +      ++  +      +  D+   +
Sbjct: 329 EFGSVGPIGVSEDVKVYADRYVQDLANAITGANETGFHYKNVNPERDFTVLSYEDLRFVQ 388

Query: 267 LFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+
Sbjct: 389 EGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD 
Sbjct: 449 LSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DL+G P+++ VG K V    VE+K + TG   ++  EE+ N      + 
Sbjct: 509 NERAGVKFADSDLIGCPIRITVGKKAVE-GIVEVKIKKTGEMVEVRKEELANTLPILLNQ 567


>gi|50842977|ref|YP_056204.1| prolyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289428734|ref|ZP_06430417.1| proline--tRNA ligase [Propionibacterium acnes J165]
 gi|295131048|ref|YP_003581711.1| proline--tRNA ligase [Propionibacterium acnes SK137]
 gi|81826419|sp|Q6A7L9|SYP_PROAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50840579|gb|AAT83246.1| prolyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289158132|gb|EFD06352.1| proline--tRNA ligase [Propionibacterium acnes J165]
 gi|291375052|gb|ADD98906.1| proline--tRNA ligase [Propionibacterium acnes SK137]
 gi|332675928|gb|AEE72744.1| proline--tRNA ligase [Propionibacterium acnes 266]
          Length = 585

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 102/245 (41%), Positives = 148/245 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ASIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPD 243

Query: 242 IISLN 246
            + ++
Sbjct: 244 PLPID 248



 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 413 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 472

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 473 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 531

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 532 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576


>gi|284929344|ref|YP_003421866.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [cyanobacterium
           UCYN-A]
 gi|284809788|gb|ADB95485.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [cyanobacterium
           UCYN-A]
          Length = 608

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 169/455 (37%), Gaps = 60/455 (13%)

Query: 11  LQENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            ++   +A    H+ + +  G+    +    G+  W P G      +   +REEQ + G 
Sbjct: 191 YKKRKEEALKRDHRKLGKELGLFIFSNSVGPGLPLWTPKGTIIRSVLENFLREEQLKRGY 250

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRS 120
           + +  P +   DL+  SG + +Y ++M  L   N+ A       +  P +      I++S
Sbjct: 251 LPVVTPHIGKVDLFKTSGHWQNYKEDMFPLMSDNEVARGEEIGFVLKPMNCPFHIQIYKS 310

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +    +R E     G + R R F + D++ F +TP+     +  +  
Sbjct: 311 DLKSYRDLPVRLAEFGTVYRYEKSGELGGLTRVRGFTVDDSHLF-VTPDQLDDEFLNVVN 369

Query: 180 SYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
             L +F  L LK+   R           IG D   E              S++ +   + 
Sbjct: 370 LILSVFENLQLKNFKARLSFRDPSSNKYIGSDEVWE-------------KSQNAIYRAVK 416

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
             N D+ +     +            +                   R  ++G +      
Sbjct: 417 MLNIDYFEAEGEAAFYGPKLDFIFQDA-----------------LDREWQLGTV---QVD 456

Query: 294 YSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           Y+LP   +  + G  G  H  + +     G++  +  ++   + G   +W   ++P ++ 
Sbjct: 457 YNLPERFNLEYIGEKGDKHRPIMIHRAPFGSLERLIGILIEEYVGDFPLW---LSPVQVR 513

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +     +  D  + +   +         D  GE++G      +    P+  I+GSK 
Sbjct: 514 ILPV---SDLYLDYAKGVMQTMLMSKIRAEVDTSGERLGKMIRKGEKEKIPVMAIIGSKE 570

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +  + + I+ R +G    M + + +       SN+
Sbjct: 571 METNSLNIRTRKSGELGLMPINDFMKSILETISNH 605


>gi|110801651|ref|YP_699687.1| prolyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123341520|sp|Q0SQC0|SYP_CLOPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110682152|gb|ABG85522.1| prolyl-tRNA synthetase [Clostridium perfringens SM101]
          Length = 570

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE  V          
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCTACDYAA 231



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/196 (38%), Positives = 102/196 (52%), Gaps = 3/196 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADG 307
                      D  N  + +  PE  +     RG EVGHIF  GTKYS  M ATF   DG
Sbjct: 370 NYGRDFEGIVGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDG 429

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K     MG YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I     ++      E+
Sbjct: 430 KAKPFIMGCYGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATKAEE 489

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L K+G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E
Sbjct: 490 IYNELRKMGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVE 548

Query: 428 DMSLEEVINYASHRFS 443
            +S+EEV N     F 
Sbjct: 549 TLSIEEVYNRVRKEFE 564


>gi|18311410|ref|NP_563344.1| prolyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|168206822|ref|ZP_02632827.1| prolyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168214717|ref|ZP_02640342.1| prolyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168217921|ref|ZP_02643546.1| prolyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182626988|ref|ZP_02954718.1| prolyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|81849146|sp|Q8XHQ4|SYP_CLOPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18146094|dbj|BAB82134.1| proline-tRNA ligase [Clostridium perfringens str. 13]
 gi|170661763|gb|EDT14446.1| prolyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170713833|gb|EDT26015.1| prolyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177907658|gb|EDT70282.1| prolyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182380028|gb|EDT77507.1| prolyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 570

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE  V          
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCTACDYAA 231



 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/196 (38%), Positives = 102/196 (52%), Gaps = 3/196 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADG 307
                      D  N  + +  PE  +     RG EVGHIF  GTKYS  M ATF   DG
Sbjct: 370 NYGRDFEGIVGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDG 429

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K     MG YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I     ++      E+
Sbjct: 430 KAKPFIMGCYGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATKAEE 489

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L K+G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E
Sbjct: 490 IYNELRKMGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVE 548

Query: 428 DMSLEEVINYASHRFS 443
            +S+EEV N     F 
Sbjct: 549 TLSIEEVYNRVREEFE 564


>gi|219113513|ref|XP_002186340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583190|gb|ACI65810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 766

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 161/448 (35%), Gaps = 38/448 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L + +EN   A+   H+ +       M H  S G   WLP G +  + +   I+   
Sbjct: 351 KKMLKVWKENQEKAKERDHRRIAAKQDLIMFHDLSAGSAFWLPHGARIYNKLIDFIKSHY 410

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + + DLW +SG    Y   M    D   +     P +      +F + 
Sbjct: 411 WNRGYDEIITPNIYNLDLWHKSGHALHYKDAMFCF-DVEGQEWAMKPMNCPGHCLMFANS 469

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           I+SYR+LP  F    +  R+EL     G+ R R F   DA+ +    +  +         
Sbjct: 470 IRSYRDLPLRFADFGVLHRNELSGALTGLTRVRRFQQDDAHIY-CREDQIEKEVVDALNF 528

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G+    +   + P         + L +  E  +  +                
Sbjct: 529 MKDVYDTFGMTY-KLELSTRPQKALG---DVALWERAEEALANA---------------M 569

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +            A      + K+ D++    + +   ++      F  +Y+     
Sbjct: 570 DMFAGKGGWRVNPGDGAFYGPKIDIKVMDAMDRVHQCATVQLDFQLPIRFDLQYTTA--- 626

Query: 301 TFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                +G+     V +    +G++  + AV+   + GK   WP  ++P ++ L+ +    
Sbjct: 627 --SKEEGQQFARPVMIHRAMLGSVERMFAVLCEHYGGK---WPFWLSPRQVMLVPV---H 678

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  E I A+L   G  V  D        +   A +  +  Q +VG   V++  V I
Sbjct: 679 AEFFDYSEDIRAKLHAEGFYVDVDTSKNTFQKKVRNAQVAQYNFQFVVGKAEVANGSVNI 738

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++R   +  +  ++E+I         ++
Sbjct: 739 RNRENQVEGEKKIDEMIAMLKQLREEHK 766


>gi|319779147|ref|YP_004130060.1| Prolyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317109171|gb|ADU91917.1| Prolyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 582

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 121/231 (52%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKY +  L+E P +AE+ SHK MLR GMI +   GIY+++PLG K L  V AI+REE
Sbjct: 1   MLASKYHINTLKEAPAEAEVVSHKYMLRAGMIRKLGAGIYTYMPLGFKVLKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW+++ R+++YG E+LR  DR+ +  I  PT EEV+TDI  +
Sbjct: 61  MNRAGAIELLMPIVQPAELWMKTERWNAYGPELLRFKDRHSRDFIIQPTSEEVITDIVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S+R LP  FY IQ KFRDE RPRFG+MR REFLMKDAYSFD T E +  SY KM+ +
Sbjct: 121 EVHSWRQLPLNFYHIQTKFRDERRPRFGLMRGREFLMKDAYSFDRTEEEANISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+RIF RLGLK   + A++G IGG  SHEF V+A TGE  +  +       
Sbjct: 181 YVRIFTRLGLKFRAVNADTGSIGGSRSHEFQVIAQTGEDLIVYNPQSEYAA 231



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      +      P     D+ N    D            RGIEVGH+F+ G KYS  +
Sbjct: 371 DGTHYVGVNWGRDLPEPQVEDIRNVVEGDPTSDGVGTLAIDRGIEVGHVFFLGDKYSSKL 430

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
            A +   +GK+  +QMG YGIG  R+VAA IE +HD  GIIWP  +AP++I +  I  + 
Sbjct: 431 RAVYLDENGKEAVIQMGCYGIGVSRIVAAAIEQNHDENGIIWPLPMAPYEIVICPIGWSK 490

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++   ++Y +L   G DV  DD   + G  F   +L+G P+++ VG + + D  +E
Sbjct: 491 SEEVKNKSLELYEQLKAEGYDVILDDRDLRTGVMFTEWELIGVPIRITVGDRGLKDGVIE 550

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R     + +SL EVINY    +  
Sbjct: 551 VQKRTEKEAKKLSLNEVINYVKSVYDE 577


>gi|260434317|ref|ZP_05788287.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412191|gb|EEX05487.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 611

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 156/440 (35%), Gaps = 40/440 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEEFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L PE       K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILKILDLTERILSSFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P           LA  G  +    K +                      
Sbjct: 381 FSNYEINLSTRPEKSIGDDTVWDLATKGLIEALDRKGWAYKIDEGGG------------- 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
                  A      + K+ D++    + S   ++    F    ++       +  ADG K
Sbjct: 428 -------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERF----DLDYVAADGSK 472

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++     ++  ++ G    W   +AP ++ L+ +       +   E++
Sbjct: 473 QRPIMIHRAIFGSLERFFGIMTENYAGDYPFW---LAPEQVRLLPVT---DEVQPYAEQV 526

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L+K G     D  G+++G      + +  P+  ++G+K    + V ++ R  G    
Sbjct: 527 LDQLTKAGVRATIDRSGDRLGKLIRTGEQIKIPVLAVIGAKEAEQNAVSLRSRRDGDLGV 586

Query: 429 MSLEEVINYASHRFSNNRPV 448
            ++ +++   + + +N+  V
Sbjct: 587 TAVADLLR--AAQLANSERV 604


>gi|110799310|ref|YP_697117.1| prolyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168211250|ref|ZP_02636875.1| prolyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|123049576|sp|Q0TMM3|SYP_CLOP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110673957|gb|ABG82944.1| prolyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170710790|gb|EDT22972.1| prolyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 570

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 118/231 (51%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE  V          
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCTACDYAA 231



 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/196 (38%), Positives = 102/196 (52%), Gaps = 3/196 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADG 307
                      D  N  + +  PE  +     RG EVGHIF  GTKYS  M ATF   DG
Sbjct: 370 NYGRDFEGIVGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDG 429

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K     MG YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I     ++      E+
Sbjct: 430 KAKPFIMGCYGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATKAEE 489

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L K+G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E
Sbjct: 490 IYNELRKMGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVE 548

Query: 428 DMSLEEVINYASHRFS 443
            +S+EEV N     F 
Sbjct: 549 TLSIEEVYNRVREEFE 564


>gi|73748565|ref|YP_307804.1| threonyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|289432591|ref|YP_003462464.1| threonyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|123732511|sp|Q3ZXB5|SYT_DEHSC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73660281|emb|CAI82888.1| threonyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|288946311|gb|ADC74008.1| threonyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 582

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 155/442 (35%), Gaps = 40/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L + +  +   G+ +WLP G      +    ++E  + G
Sbjct: 174 YLNMLEEAAKRDHRKLGKELELFS-LHQEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKRG 232

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +SY
Sbjct: 233 YDLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSY 292

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+ R R F   DA+ F L  +  +    K+      +
Sbjct: 293 KELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCL-YDQLEKEVVKVLDLAKFM 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P       +    A     +   +        P E   +   I 
Sbjct: 352 IDTFGFTKYKVMLSTRPEKYVGELDKWEYATDILAKALEANQIPYQVDPGEGVFYGPKI- 410

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                              + K  D+L    +     ++    F    ++      +  G
Sbjct: 411 -------------------DIKFEDALGRTWQGPTIQVD----FQLPERF----DVSVVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKD  V  +    +G+M    + +   + G    W   ++P ++ +I I        +
Sbjct: 444 EDGKDQPVAMVHRTVLGSMERFMSCLTEQYGGAFPAW---LSPKQVMVIPIA---DRHTE 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L +    V  D   E +  +   A L   P  ++VG K +    V ++ R T
Sbjct: 498 FAEKLACELREEEVRVEVDSRSETMNQKIRQAQLAKIPYMLVVGDKEIETQSVAVRTR-T 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G ++ M   E  +    +    
Sbjct: 557 GSQQVMPFAEFKSMLLAKIKTK 578


>gi|148242044|ref|YP_001227201.1| threonyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|147850354|emb|CAK27848.1| Threonyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 609

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 145/430 (33%), Gaps = 38/430 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       L L + +  +   G+  W P G +    +    RE     G   
Sbjct: 198 RIEEAKRRDHRRIGTDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWREAHFAGGYEL 256

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   DLW  SG  D Y + M      +++     P +       + S ++SY+ L
Sbjct: 257 LYTPHVADIDLWKTSGHLDFYRESMFGPMTVDEREYQLKPMNCPFHVLTYASTLRSYKEL 316

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + ++   +R E      G+MR R F   DA+ F L PE       K+      I   
Sbjct: 317 PIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILKILDLTETILST 375

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
              ++  +   + P           LA  G T+    K +                    
Sbjct: 376 FDFRNYEINLSTRPEKSIGDDAVWDLATKGLTEALQRKGWDYKIDEGGG----------- 424

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + S   ++      FG +Y           DG
Sbjct: 425 ---------AFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFGLEYVAA--------DG 467

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            +   + +     G++     ++  ++ G    W   +AP +I L+ +           E
Sbjct: 468 SRQRPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT---DEVMGYAE 521

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I + LS  G     D  GE++G      +    P+  ++G++      + ++ R  G  
Sbjct: 522 TIQSELSAAGIRSRIDRSGERLGKLIRSGEQQKIPVLAVIGAQEAEQGTLSLRSRRQGDL 581

Query: 427 EDMSLEEVIN 436
             +   +V+ 
Sbjct: 582 GSVGRSQVLQ 591


>gi|293556646|ref|ZP_06675211.1| prolyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601181|gb|EFF31468.1| prolyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 569

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 151/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKILIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  +  S +          T + 
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSYY 240



 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 5/240 (2%)

Query: 209 EFIVLADTG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           EF  +   G  +     +  ++     +     +      ++  +      +  D+   +
Sbjct: 329 EFGSVGPVGVSDDVKVYADRYVQDLANAITGANETGFHYKNVNPERDFTVLSYEDLRFVQ 388

Query: 267 LFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+
Sbjct: 389 EGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D +GI WP  +APF + ++ +   D+       ++   ++K G +V  DD 
Sbjct: 449 LSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTSLTNELEEAMTKAGYEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DL+G P+++ VG K V D  VE+K + TG   ++  EE+ N      + 
Sbjct: 509 NERAGVKFADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELANTLPILLNQ 567


>gi|46199818|ref|YP_005485.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|73919837|sp|Q72HH1|SYT_THET2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46197445|gb|AAS81858.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 659

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 160/453 (35%), Gaps = 49/453 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L   +I     KG+  WLP G    + + A +REEQ R
Sbjct: 240 EYLWQLEEAKKRDHRRLGRELELF--LIDPMVGKGLVLWLPKGNVVREELMAFMREEQVR 297

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR---LADR-NDKAMIYGPTHEEVMTDIFR 119
            G   ++ P + S +L+  SG Y  Y +         +R  ++  +  P +      I+ 
Sbjct: 298 RGYQLVTTPHIGSLELYKTSGHYPYYAESQFPPISFKERGEEEEYLLKPMNCPHHIRIYA 357

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SYR LP    +    +R E      G+ R R F   DA+ F  TPE  K  +  + 
Sbjct: 358 YRKRSYRELPLRLAEFGTVYRYEKAGELLGLTRVRGFTQDDAHIF-CTPEEVKGEFLGVL 416

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV--FCSKDFMDFPIPSEN 236
              L++F  LGLK    R        D            E Q+    ++  + + +   +
Sbjct: 417 DLVLKVFATLGLKDYRARIGVRDPKSDKYVGDEAKWALAERQIEEAAAEAGLRYTVEEGD 476

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             F        +                          K    R  ++G I      Y+L
Sbjct: 477 AAFYGPKLDFVV--------------------------KDALGREWQLGTI---QVDYNL 507

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P     T+ G DG++H  V +     G++     ++     G   +W             
Sbjct: 508 PERFGLTYVGKDGEEHRPVMLHRAPFGSLERFIGILIEHFAGDFPLWLAP------VQAV 561

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++  RL + G     D   E++ ++   A++   P  ++VG +  ++
Sbjct: 562 VVPVSEKQEGYAREVAGRLKEAGLRAEADTRPERMQARIRDAEVQKVPYVLVVGEREKAE 621

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             V ++ R  G    M L   +  A   +   R
Sbjct: 622 GAVSVRRRKKGNLGTMPLAAFLEGALREYRERR 654


>gi|295093898|emb|CBK82989.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Coprococcus sp.
           ART55/1]
          Length = 587

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 153/433 (35%), Gaps = 36/433 (8%)

Query: 18  AEIASHKLMLR---TGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           A+   H+ + +     M+     +G+  +LP G      +   I+ ++ + G + +  P 
Sbjct: 179 AKERDHRKIGKDMQLFMVDDLVGRGLPMFLPKGYTVWQELENYIKRKERKLGYLHVMTPC 238

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +L+  SG +D Y   M    +   ++ +  P +      I+ + + SY++LP    
Sbjct: 239 VGTVNLYKTSGHWDHYKDNMFPAMEMEGESFVLRPMNCPHHMMIYANKMHSYKDLPIRIA 298

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-K 191
           +I   FR E      G+ R R F   D++ F +TP+  +  +  +       +   G+  
Sbjct: 299 EIAHDFRFEASGTLKGIERGRHFCQNDSHIF-VTPDQIEEEFAGVVKLIFDTYKDFGITD 357

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              + +   P      H+   + +  E  +          +     D+ + I        
Sbjct: 358 YRCVLSLRDPEDKVKYHDDDEMWNKAENALRK-------VLDDIGIDYTEEIGEA----- 405

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
                A      +  +  ++     +S   ++    F    K+       +   DG+   
Sbjct: 406 -----AFYGPKLDVNVKPAVGNEYTLSTCQLD----FCLPAKF----DLKYIDKDGEKKT 452

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++    A I     G    W   +AP ++ ++ +K  ++       K+  
Sbjct: 453 PVVLHRAILGSLDRFMAYILEETKGNLPTW---LAPVQVRVMPVKTDNEDLMAYAHKVVD 509

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +   V  DD  E++G +     +   P  +++G     +  V  +         + 
Sbjct: 510 ALDAIDVRVELDDRAEKLGYRMREGQVQKVPYLLVIGFNEAENGTVSYRLHGEADTTVLP 569

Query: 431 LEEVINYASHRFS 443
           L+E +        
Sbjct: 570 LDEFVQRIDTEIK 582


>gi|167740276|ref|ZP_02413050.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 14]
          Length = 568

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 124/214 (57%), Positives = 159/214 (74%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 214



 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 346 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 401

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+W +
Sbjct: 402 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWAE 461

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 462 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 521

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 522 HRLVIGERGLKDGKIEYQGRRDAEATLLP 550


>gi|308233721|ref|ZP_07664458.1| prolyl-tRNA synthetase [Atopobium vaginae DSM 15829]
          Length = 575

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 111/230 (48%), Positives = 150/230 (65%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK + P L+E+P DA+IASHKL++R GMI + + G+YS+LPL  +++  + +IIREE 
Sbjct: 6   RMSKLYAPTLKEDPTDADIASHKLLVRAGMIRKAAAGLYSYLPLAWRSIQKIESIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A EM  P L  A+LW +SGR+ +YG E++RL DR+D     GPTHEE  TD+ R+ 
Sbjct: 66  EAIDAQEMLAPILTDAELWHQSGRWGAYGPELMRLTDRHDHEYALGPTHEETFTDLIRNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY++LP T Y IQ KFRDE RPRFG+MR REF+MKD YSF    E     Y +   +Y
Sbjct: 126 LKSYKDLPVTLYHIQDKFRDERRPRFGLMRGREFIMKDGYSFCANQESLHECYEQEKDAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             I  R GL+++P+ A+SG IGGD S EF+ LAD GE ++          
Sbjct: 186 ATIARRCGLRAVPVVADSGQIGGDTSVEFMALADAGEAELIYCDACDYAA 235



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/193 (41%), Positives = 114/193 (59%), Gaps = 2/193 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   +  DS P       SARGIE+  +F  GTKYS  M ATF   DG +    MG 
Sbjct: 381 WQDLIVTEAGDSCPCCSAALKSARGIEISQVFQLGTKYSKAMGATFMDEDGTEKPFIMGC 440

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AAV+E SHD  GIIWP SVAP+++++I +  HD+      +++   L K G
Sbjct: 441 YGIGVSRTLAAVVEQSHDEHGIIWPVSVAPYEVAVIPLDVHDETVWPVAQRLAEGLIKAG 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD GE+ G +F  ADL+GFP QV+ G K ++ + VE+K+R TG R ++ ++EV++
Sbjct: 501 IEVIVDDRGERPGIKFNDADLMGFPYQVVCGKKALAHACVEVKNRATGERTEVPVDEVVD 560

Query: 437 YASHRFSNNRPVL 449
           +  H     R  L
Sbjct: 561 HLVHEIVPQRQGL 573


>gi|86608959|ref|YP_477721.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557501|gb|ABD02458.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 603

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 163/448 (36%), Gaps = 46/448 (10%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E  R D      +L L      +   G+  W P G      +   +++EQ +
Sbjct: 190 KEYKRRLEEAKRRDHRKLGKELGLFL-FSDEVGPGLPLWTPKGTTLRWVLEDFLKQEQLK 248

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDI 117
            G + +  P +   DL+  SG +  Y ++M  +   N++A       +  P +      I
Sbjct: 249 RGYLPVVTPHIARVDLFKISGHWQKYREDMFPMMAENEQARAAEQGFVMKPMNCPFHIQI 308

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++S ++SYR+LP  + +    +R E      G+ R R F + DA+ F + P+  +  + K
Sbjct: 309 YKSELRSYRDLPLRYAEFGTVYRYEQSGELGGLTRVRGFTVDDAHLF-VRPDQLEEEFLK 367

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F +L LK    R        D         D  E  +  + + +  P     
Sbjct: 368 VVDLILVVFDKLKLKDFRARLSFRDPKSDKYLGSPEDWDRAENAIRRAVEKLSMP----- 422

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               AA      + +F      +    R  ++G +      Y  
Sbjct: 423 -------------HFEGIGEAAFYGPKLDFIF------RDALDREWQLGTV---QVDYQN 460

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +   DG +   V +     G++  +  ++   + G    W   +AP ++ ++ 
Sbjct: 461 PQRFDLQYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPFW---LAPEQVRILP 517

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +            ++  +L + G  V  D   +++  +   A+    P  +IVG +  + 
Sbjct: 518 V---SDQYLGYATQVRDQLREQGIRVHIDADSDRLPKKIRNAEKARIPFMLIVGEQEQAA 574

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V ++ R       +++ + ++     
Sbjct: 575 GTVSVRQRHGQELGSLTVADFLDQVQAL 602


>gi|84366334|dbj|BAE67492.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 583

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 20  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 80  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 140 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 200 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 243



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 422 RGIEVGHVFQLGSQYAQALQATVIDEGGKVAVMKMGCYGIGISRIVAAAIEQNHDDAGII 481

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +   L   G D   DD G + G+ FA  +LL
Sbjct: 482 WPAPMAPWQVVVCVINPKQDAQVVSAAQALLDELIAAGLDAALDDRGLRPGAMFADMELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P +V+V  + ++    E + R     E++    + +  
Sbjct: 542 GIPHRVVVSERGLAAGTFEYRARTAAAAENLDKAGLFSRL 581


>gi|241894947|ref|ZP_04782243.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871665|gb|EER75416.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
          Length = 699

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 164/441 (37%), Gaps = 37/441 (8%)

Query: 16  RDAEIASHKLML-RTGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            +A+   H+ +     +     +   G+  W+P G      +   I + + + G   +  
Sbjct: 279 AEAKERDHRKIGADQDLFFTSQEVGSGLAVWMPNGAAIRRTLERYIVDREVQDGYQHVYT 338

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPF 130
           P L + +L+ +SG +D Y  +M    D  D   +   P +      +++ H +SYR+LPF
Sbjct: 339 PVLSNLNLYKQSGHWDHYRDDMFPPMDMGDGEFLELRPMNCPSHIMVYKHHQRSYRDLPF 398

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              ++ +  R E      G+ R RE  + D ++F +  +  +  + K+    + ++    
Sbjct: 399 RVAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVM-LDQIEDEFKKILQLMVDVYKDFD 457

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +     R                  D   T+ +   D M            D   ++   
Sbjct: 458 ITDYRFRLSYR--------------DPKNTEKYFDDDEMWEKAQRMLKGAMD--DMDLEY 501

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            +     A      + ++  +L   + +S   ++    F    ++      T+ G+DG+ 
Sbjct: 502 FEAEGEAAFYGPKLDVQIKTALGGEETLSTIQLD----FLLPERF----DVTYVGSDGEL 553

Query: 310 HYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H   M   GI + M    A +   + G    W   +AP ++ +I +    +   +  + +
Sbjct: 554 HRPVMIHRGIISTMERFTAYLTEMYKGAFPTW---LAPHQVRIIPVNR--EAHGEFAQAL 608

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             RL K      +D   E++G     A  L  P  +++G + VS+  V I+   +     
Sbjct: 609 TDRLVKQDIRADYDGRNEKLGYLIRNAQSLKIPYTLVIGDEEVSNDTVTIRRFGSRDTSV 668

Query: 429 MSLEEVINYASHRFSNNRPVL 449
            S+++         +N+   L
Sbjct: 669 KSVDQFETDLLADIANHSRAL 689


>gi|291519633|emb|CBK74854.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 588

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 156/444 (35%), Gaps = 38/444 (8%)

Query: 8   LPILQENP-RDAEIASH--KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L +L+E   RD        +L +   +I    +G+  +LP G      +   IR ++ + 
Sbjct: 174 LALLEEAKERDHRKIGKDMQLFMADDLI---GRGLPMYLPNGYTIWTELENYIRNKERKL 230

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G + +  P + +  L+  SG +D Y + M    +   ++ +  P +      IF +   S
Sbjct: 231 GYLHVMTPCVGTVQLYQTSGHWDHYKENMFPAMEVEGESFVLRPMNCPHHMRIFANRPHS 290

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP    +I   FR E      G+ R R F   D++ F  T E  K     +      
Sbjct: 291 YKELPIRIAEIAHDFRFESSGTLKGIERGRHFCQNDSHIF-CTQEQIKSEVKSVCDLIFS 349

Query: 184 IFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   G+     + +   P      H+   + +T E  +  +                 +
Sbjct: 350 TYEDFGITDYRCVLSLRDPADTKKYHQDDEMWNTAEQALRET-----------------L 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             +     +     A      +  +  ++     +S   ++    F    K+      T+
Sbjct: 393 TEIGIEFTEEIGEAAFYGPKLDVNVKPAIGNEITLSTCQLD----FCLPAKF----DLTY 444

Query: 303 KGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             AD  K   V +    +G++    A I     G   +W   +AP ++ ++ +K  D   
Sbjct: 445 TDADSNKQTPVVIHRAILGSLDRFMAYILEETKGNLPLW---LAPTQVKVLPVKNDDADL 501

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +K+   L+     V +D   E++G +   A +   P   ++G    ++  V  +  
Sbjct: 502 NAYAQKLVDALADADVRVEFDTRSEKLGYKMREAQIQKVPYLAVLGKNEEAEGTVSYRLH 561

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +  +E +    +   + 
Sbjct: 562 GEHGTTTVKFDEFVELIVNEIKSK 585


>gi|299139552|ref|ZP_07032726.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298598480|gb|EFI54644.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 614

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 111/232 (47%), Positives = 149/232 (64%), Gaps = 1/232 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHKL+LR G I Q   GIYS+LPLGQ++L+ + AI+REE 
Sbjct: 3   RWSKLFIPTLREAPTDAEVASHKLLLRAGYIRQLGAGIYSYLPLGQRSLNKIIAIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N+ G  E  +P L   +LW ESGR+   G+ +  L DR    +    THEEVMT I R+ 
Sbjct: 63  NKIG-QEFLLPALNPRELWEESGRWTGMGQNLFHLQDRKGAELCLAMTHEEVMTSIARNE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY K + +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPKAGLLRVRQFTMKDAYSFDVDQAGLDESYRKHYDTY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           +RIF R GL+ + + A+SG +GG  S EF+V  D GE  +  S       + 
Sbjct: 182 VRIFKRCGLEFVAVDADSGAMGGSGSQEFMVYTDAGEDLIASSASGYAANLE 233



 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 4/186 (2%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE   D +        + +E+GHIF  GTKYS  M A    A+GK+    MG YGIG  R
Sbjct: 429 NEGEPDPIGGEPLRLGKAVEIGHIFKLGTKYSESMGARVLDANGKEVLPIMGCYGIGIER 488

Query: 324 VVAAVIESSHD---GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++ A IESS     G+    P ++APF + +      +     A EKI A L   G DV 
Sbjct: 489 ILTAAIESSAAANAGEQYALPAAIAPFAVVVTITNVREADLLAAGEKIAADLEAAGVDVL 548

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+ G +F  A+L+G P ++ +G K +++ +VE+  RLT    D+ L+ +  +   
Sbjct: 549 LDDRDERAGVKFKDAELIGVPYRINIGKK-LAEGQVELVDRLTQTTTDLPLDAITAHIQS 607

Query: 441 RFSNNR 446
             + ++
Sbjct: 608 LLAASK 613


>gi|156717366|ref|NP_001096223.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Xenopus
           (Silurana) tropicalis]
 gi|123909108|sp|Q0V9S0|SYTC2_XENTR RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|111307891|gb|AAI21418.1| tarsl2 protein [Xenopus (Silurana) tropicalis]
          Length = 814

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 154/440 (35%), Gaps = 44/440 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + R       H  S G   +LP G    + +   I+ E   
Sbjct: 398 LMKEWEQFQEEAKNRDHRKIGRDQELFFFHDLSPGSCFFLPRGAHIYNTLTDFIKGEYQI 457

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E++ P + ++ LW  SG +  Y + M        +     P +      +F    +
Sbjct: 458 RNFTEVASPNIYNSKLWEMSGHWQHYSENMFSFEVEK-ETFALKPMNCPGHCLMFGHRPR 516

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP  F    +  R+EL     G+ R R F   DA+ F  T +  +   N       
Sbjct: 517 SWRELPLRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTMDQIQEEMNGCLQFLQ 575

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 576 SVYKVFGFTF-QLHLSTRPENYLGEIEIWNEAEKQLESSLNQFGEPWKLNPGDG------ 628

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L    T+
Sbjct: 629 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TY 666

Query: 303 KGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG  K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      
Sbjct: 667 VSKDGDDKKRPVIIHRAILGSVERMIAILCENYGGK---WPFWLSPRQVMVIPVGPS--- 720

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C +  +++   + + G     D D    +  +   A L      ++VG K  +DS V ++
Sbjct: 721 CDEYAQQVCKDVFEAGFMAEVDLDHSCTLNKKIRNAQLAQCNFILVVGEKEKTDSAVNVR 780

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R   +  ++ L   I    
Sbjct: 781 TRDNKVHGEILLTSAIEKLK 800


>gi|256832247|ref|YP_003160974.1| prolyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256685778|gb|ACV08671.1| prolyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 594

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 107/234 (45%), Positives = 144/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASH+L++R G I + + GIYSWLPLG + LD V+A++REE
Sbjct: 3   LRLSTLFVRTLREDPVDAEVASHRLLVRAGYIRRAAPGIYSWLPLGLRVLDKVDAVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA  +  P L   + +  +GR+  YG  + RL DR D   +  PTHEE+ T + + 
Sbjct: 63  MERAGAQRVHFPALLPREPYEATGRWTEYGPNLFRLQDRKDGDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFDLT EG   SY     +
Sbjct: 123 LYSSYKDLPVTLYQIQTKYRDEARPRAGLIRGREFIMKDAYSFDLTEEGLAESYRAQRDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RLGL  + + A SG +GG  S EF+   D GE     S       + +
Sbjct: 183 YERIFRRLGLDYVIVAATSGAMGGSRSEEFLTPTDIGEDTFVRSPGGYAANVEA 236



 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 4/165 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +       +GK   V MGSYGIG  RV+AA+ ++ HD +G+ 
Sbjct: 426 RGIEIGHIFQLGRKYAEALGLKVLDVNGKHTTVTMGSYGIGVTRVMAALAQAHHDSQGLA 485

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLL 398
           WP  VAP  + L+     D    +A E +  RLS  G +V +DD      G +F  A+L 
Sbjct: 486 WPIQVAPAHVHLVA-TGKDARIFEAAESLAQRLSDRGVEVIYDDRVKVSPGVKFKDAELF 544

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  V+VG + + +  +E + R+ G  + + + + ++  +   +
Sbjct: 545 GVPFIVVVG-RGLDEGTIEFRTRV-GEPQQVHINDAVDVVTDAVA 587


>gi|239917224|ref|YP_002956782.1| prolyl-tRNA synthetase, family II [Micrococcus luteus NCTC 2665]
 gi|281414302|ref|ZP_06246044.1| prolyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|259511606|sp|C5C9S6|SYP_MICLC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239838431|gb|ACS30228.1| prolyl-tRNA synthetase, family II [Micrococcus luteus NCTC 2665]
          Length = 608

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 101/234 (43%), Positives = 142/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P +AE+ASH+L++R G I + + GIYSWLPLG K L  V  I+REE
Sbjct: 3   LRMSTLFLRTLRDDPAEAEVASHRLLVRAGYIRRAAPGIYSWLPLGLKVLAKVERIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  +GR+D YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MDAIGAQEVHFPALLPREPYEATGRWDEYGDGLFRLQDRRGNDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y     +
Sbjct: 123 LYSSYKDLPAYLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFTVDDAGLDAAYEAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           YLRIF RLGL+ +P+RA SG +GG  S EF+   + GE     S       + +
Sbjct: 183 YLRIFDRLGLEVVPVRATSGAMGGSRSEEFLHPTEVGEDTFVESDGGYRANVEA 236



 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 3/183 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E            + RG+E+GHIF  G KY+  +        GK   V MGSYGIG  R 
Sbjct: 428 EGDEAPDGSGPLHTRRGMEMGHIFQLGRKYAEALDLKVLDVHGKQVVVTMGSYGIGITRA 487

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA+ E  HD KG+ WP +VAP  + ++ +    +    A E + A L   G  V  DD 
Sbjct: 488 VAAIAERYHDDKGLAWPRAVAPADVHVV-VATKGEDGLAAAETLAASLEAEGLTVLVDDR 546

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +   G +F  A+L+G P  V++G + ++D ++E+K R TG    + ++  +        
Sbjct: 547 PKVSPGVKFKDAELIGVPTTVVIG-RGLADGELELKDRATGEARPVPVDGAVAAVLAEVR 605

Query: 444 NNR 446
           + R
Sbjct: 606 DGR 608


>gi|167817496|ref|ZP_02449176.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167847384|ref|ZP_02472892.1| prolyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167904356|ref|ZP_02491561.1| prolyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167912616|ref|ZP_02499707.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 112]
          Length = 568

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 124/214 (57%), Positives = 159/214 (74%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 214



 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 346 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 401

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 402 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 461

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 462 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 521

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 522 HRLVIGERGLKDGKIEYQGRRDAEATLLP 550


>gi|58425026|gb|AAW74063.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 595

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 32  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 91

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 92  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 151

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 152 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 211

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 212 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAFS 255



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 434 RGIEVGHVFQLGSQYAQALQATVIDEGGKVAVMKMGCYGIGISRIVAAAIEQNHDDAGII 493

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A + +   L   G D   DD G + G+ FA  +LL
Sbjct: 494 WPAPMAPWQVVVCVINPKQDAQVVSAAQALLDELIAAGLDAALDDRGLRPGAMFADMELL 553

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P +V+V  + ++    E + R     E++    + +  
Sbjct: 554 GIPHRVVVSERGLAAGTFEYRARTAAAAENLDKAGLFSRL 593


>gi|188997600|ref|YP_001931851.1| prolyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226701347|sp|B2V6W5|SYP_SULSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188932667|gb|ACD67297.1| prolyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 564

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 113/276 (40%), Positives = 159/276 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+F+P L+ENP DA + SH  ++R G I   S GIY +LPLG K L  +  IIR+ 
Sbjct: 1   MLASKFFMPTLKENPSDAVVPSHIYLVRGGFIRSLSAGIYEYLPLGLKVLRKIENIIRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+ +P L  A+LW E+GR+  YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDDSGALEVLLPILTPAELWKETGRWHVYGKELFRLKDRKDAEFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YSFD++ E +K +Y  M  +
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYSFDVSEEDAKKTYEVMKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF  LGL  + + A+ G IGG  SHEF+V   +GE  +   +               
Sbjct: 181 YHKIFKELGLDYLMVEADVGAIGGKFSHEFVVKVPSGEAHIVYCEKCGYAANVEAAKFHH 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
             +                  V +   F ++P  K 
Sbjct: 241 HKLPPEEPKPIEKVYTPDIKSVEDVANFLNVPLTKL 276



 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 132/265 (49%), Gaps = 21/265 (7%)

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            + ++       LG+    +    GPIG +L     + AD    +++         + + 
Sbjct: 313 DVRMATKEELESLGIPEGFV----GPIGLNL----PIYADFSLKELYN------IVVGAN 358

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTK 293
             D+  I +      + +  Y    D+   K  D  P          G+EVGHIF  GTK
Sbjct: 359 EKDYHYINANIDRDFKVSGFY----DLATAKEGDPCPVCHLPLKETTGLEVGHIFLLGTK 414

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  M A F   DGK+  + MG YGIG  R+++A++E  HD KGIIWP+++APF + ++ 
Sbjct: 415 YSESMKAYFVDKDGKEKSIIMGCYGIGVSRLISAIVEQYHDDKGIIWPENLAPFNVHILV 474

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +   DQ   +    IY +L + G DV  D+  E  G++F  ADL+G P ++++G K + +
Sbjct: 475 LNPKDQESLNVGFDIYKKLKEKGLDVLLDERDESAGAKFKDADLIGIPHRIVIG-KALKE 533

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
            KVE + R   I+E + ++ +IN  
Sbjct: 534 GKVEYQKRDGSIKELVDVKLIINKL 558


>gi|317125361|ref|YP_004099473.1| prolyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
 gi|315589449|gb|ADU48746.1| prolyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
          Length = 588

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 157/306 (51%), Gaps = 8/306 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SH+L++R G I + S G+Y+WLPLG + L NV  I+REE +
Sbjct: 5   MSSLFLRTLREDPADAEVPSHRLLVRAGYIRRVSPGVYTWLPLGLRVLRNVERIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T   +   
Sbjct: 65  AIGAQELLFPALLPREPFDASGRWAEYGDNIFRLQDRKGADHLLGPTHEEMFTLTVKDLY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y+
Sbjct: 125 SSYKDLPLSIYQIQTKYRDEARPRAGLLRGREFVMKDSYSFDIDEAGLDKSYQAHRDAYV 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP------IPSEN 236
           RIF RLG   + + A +G +GG  S EF+  A+ GE       +           +P+  
Sbjct: 185 RIFDRLGFHYVIVEAMAGAMGGSKSEEFLATAEVGEDTYVHCTNCGYAANVEAVRVPAPE 244

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
               D +      +    P   T   H          P +   + + + V  +   GT+ 
Sbjct: 245 PVGWDGVPAAHAEDTPDTPTIETLVNHLNAHHPRPDRPWSAGDTLKNVVVMLVHPDGTRE 304

Query: 295 SLPMSA 300
            L +  
Sbjct: 305 PLAIGV 310



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 5/183 (2%)

Query: 264 NEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  D  P    V    RGIE+GH+F  G KY+  +       +GK   V MGSYG+G 
Sbjct: 406 EVRFGDPCPNCDHVLEGARGIEMGHVFQLGKKYAEALDLRVLDQNGKLTTVVMGSYGVGV 465

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R VA V+E ++D  GIIWP  + P  + ++     D+    A + I   L   G     
Sbjct: 466 SRAVACVVEGNYDDSGIIWPRELTPADVHIVA-AGKDEPLFRAADDIARDLEAHGLTCIV 524

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           DD  G   G +F  ++L+G P  ++VG + ++D KVEIK R +G R +++L+ V+     
Sbjct: 525 DDRKGVSPGVKFKDSELIGVPTIIVVG-RGLADGKVEIKDRRSGERREVALDSVVESVLA 583

Query: 441 RFS 443
              
Sbjct: 584 EVR 586


>gi|332638317|ref|ZP_08417180.1| threonyl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 658

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 159/440 (36%), Gaps = 34/440 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD      +  L      +   G+  W+P G      +   I + + + G   
Sbjct: 237 RREEAKERDHRKIGAEQDLF-FTSQEVGAGLAVWMPNGAAIRRTLERYIVDREVQDGYQH 295

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRN 127
           +  P + + +L+ +SG +D Y  +M    D  D   +   P +      +F+   +SYR 
Sbjct: 296 VYTPIMSNLNLYKQSGHWDHYRDDMFPPMDMGDGEFLELRPMNCPSHIMVFKHKPRSYRE 355

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LPF   ++ +  R E      G+ R RE  + D ++F + P+  +  + K+    + ++ 
Sbjct: 356 LPFRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVM-PDQIEDEFKKILGLMIDVYA 414

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +     R                  D   T+ +   D M     +      D + L+
Sbjct: 415 DFDITDYRFRLSYR--------------DPENTEKYYDDDDMWEKAQTMLKKAMDDLELD 460

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +     A      + ++  +L   + +S   ++    F    ++       + G D
Sbjct: 461 --YFEAEGEAAFYGPKLDVQIKTALGGEETLSTIQLD----FLLPERF----DVNYVGPD 510

Query: 307 GKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+ H   M   GI + M    A +   + G    W   +AP ++ +I +           
Sbjct: 511 GELHRPVMIHRGIISTMERFTAYLTEMYKGAFPTW---LAPHQVRIIPVNR--DAHGKFA 565

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +  RL K G    ++D  E++G     A     P  +++G + V+++ V I+   +  
Sbjct: 566 KDLADRLIKQGIRAEYEDRNEKLGYLIRDAQTSKVPYTLVIGDEEVNNNTVTIRRFGSTD 625

Query: 426 REDMSLEEVINYASHRFSNN 445
            +  S++          + +
Sbjct: 626 TKSKSVDAFEAQLMADIARH 645


>gi|119717421|ref|YP_924386.1| prolyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|152112937|sp|A1SLL4|SYP_NOCSJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119538082|gb|ABL82699.1| prolyl-tRNA synthetase [Nocardioides sp. JS614]
          Length = 589

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 137/231 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L  +  +IREE
Sbjct: 3   MRMSSLFVRTLREDPADAEVPSHRLLVRAGYIRRAAPGIYTWLPLGLRVLRKIENVIREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MDAIGAQEMLFPALLPREPYEATNRWTEYGDGIFRLQDRKGADYLLGPTHEEMFTLVVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY K   +
Sbjct: 123 LYSSYKDLPLSIYQIQTKYRDEARPRAGLLRGREFVMKDSYSFDVDDAGLDVSYQKHRDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+RIF RLG + + + A SG +GG  S EF+  A  GE             
Sbjct: 183 YVRIFDRLGFEYVIVEAMSGAMGGSKSEEFLAKASVGEDTYVRCTLCDYAA 233



 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 6/179 (3%)

Query: 264 NEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             +  D  P        +ARGIE+GHIF  G KY+  +        GK   V MGSYGIG
Sbjct: 407 EVRDGDPCPRGDGGTLETARGIEMGHIFQLGRKYADALDLKVLDEQGKLVTVTMGSYGIG 466

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VAA+ E +HD  G+ WP  VAP  + ++     D+    A E+I   L K G +V 
Sbjct: 467 PSRAVAAIAEGTHDELGLAWPREVAPADVHIVA-TGKDEHVFAAAERIAHELDKQGVEVL 525

Query: 381 WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +DD  +   G +F  A+L+G P  V+VG K ++   +E+K R TG R+D+  + +++  
Sbjct: 526 YDDRPKVSPGVKFKDAELIGVPTIVVVG-KGLAAGTIEVKDRRTGQRQDVPADHLVDRV 583


>gi|221194513|ref|ZP_03567570.1| prolyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185417|gb|EEE17807.1| prolyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 571

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 112/233 (48%), Positives = 156/233 (66%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S  + P L+E+P +A +ASH+L+LR GMI + + G+YS+LPL  ++L  +  IIR+E 
Sbjct: 6   KMSSLYAPTLKEDPAEAVLASHRLLLRAGMIRKTAAGLYSYLPLAWRSLRKIEEIIRDEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ VP L  A+LW ESGR+D YG E++RL DR+++    GPTHEE  TD+ R+ 
Sbjct: 66  DGIGAQEILVPILTPAELWEESGRWDVYGPELMRLHDRHERKFALGPTHEETFTDLVRNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E  +  Y+    +Y
Sbjct: 126 LKSYKQLPVTLYQIQDKFRDEMRPRFGLMRGREFIMKDAYSFSSTQESLQECYDAEKGAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            RI  R G++++P+ A+SG IGGD S EF+ LAD GE  +            +
Sbjct: 186 ARICERTGIRALPVIADSGQIGGDTSVEFMALADAGEAALVYCDCGYAADTEA 238



 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 2/224 (0%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           KD   + I +   DF    +      +  A     +    E             ARGIEV
Sbjct: 350 KDSEWWLIGANEKDFHFTHAKLGRDFEIDAWVDVVTAR--EGDLCPTCGQPLHEARGIEV 407

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
             +F  GTKYS  + ATF   DG +    MG YGIG  R++AAV+E  +D  GIIWP  V
Sbjct: 408 SQVFQLGTKYSEALGATFTAEDGTEQPFLMGCYGIGVSRLLAAVVEQHNDEHGIIWPVCV 467

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ +   D       +++     + G +   DD  E+ G +FA ADL+G P QV
Sbjct: 468 APYEVEIVPLSVGDDTVWPVAKQLADSFVEAGLETVVDDRDERPGVKFADADLIGLPWQV 527

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           IVG + V++   E+K+R TG R D++L+EV  +   R +  R +
Sbjct: 528 IVGKRGVANGVAEVKNRETGERVDVALDEVAAWLVSRIAPLRQL 571


>gi|242024338|ref|XP_002432585.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
 gi|212518045|gb|EEB19847.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
          Length = 717

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 156/450 (34%), Gaps = 47/450 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +  I +E    A    H+ + R       H+ S G   + P G    + +   IR
Sbjct: 301 KQLKEWERIQEE----AAKRDHRKLGREQELYFFHELSPGSCFFYPKGAFIYNTLVEFIR 356

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P + +  LW  SG +  Y + M    +   +     P +      IF
Sbjct: 357 SEYRKRGFQEVITPNIYNVKLWETSGHWQHYAENMFSF-ELEKETYALKPMNCPGHCLIF 415

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +S+R LP       +  R+E      G+ R R F   DA+ F  T    K   +  
Sbjct: 416 DNRNRSWRELPLRMADFGVLHRNEFSGALSGLTRVRRFQQDDAHIF-CTVNQIKSEISGA 474

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     +R  + P            A+   T+      F     P +  
Sbjct: 475 LEFLKNVYGVFGFTF-QLRLSTRPEKYLGEINVWDQAEKQLTESLDEFGFPWKLNPGDG- 532

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L    + +   ++    F    +++L 
Sbjct: 533 -------------------AFYGPKIDITILDALKRAHQCATIQLD----FQLPIRFNL- 568

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G  G K   V +    +G++  + A++  S+ GK   WP  ++P +  +I +  
Sbjct: 569 ---NYIGESGDKIRPVIIHRAILGSVERMIAILTESYGGK---WPFWLSPRQSIVIPVGL 622

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 +  +K+   +   G    +DD  G+ +  +   A L  +    +VG K  +   
Sbjct: 623 ---PFYEYAKKVKDDIFNAGFSCDFDDDEGDTMNKKIRNAQLAQYNFIFVVGEKEKNAGT 679

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R   +  + S+ +VI          
Sbjct: 680 VNVRTRDNIVHGEFSVGDVIKKFQELKEKR 709


>gi|296330872|ref|ZP_06873347.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674390|ref|YP_003866062.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151877|gb|EFG92751.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412634|gb|ADM37753.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 564

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIQNIQQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKIDAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    +Y KM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYQKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R G+   P+ A+SG +GG  +HEF+ L+  GE  +  S +     
Sbjct: 181 YSNIFARCGINVRPVIADSGAMGGKDTHEFMALSAIGEDTIAYSDESQYAA 231



 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/161 (38%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GT+YS  M+AT+   +G+   + MG YG+G  R ++A+ E  HD KG+IW
Sbjct: 405 GIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGVGVSRTLSAIAEQHHDDKGLIW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SVAP+ + ++ +   +   R+  EK+YA L   G +V +DD  E+ G +FA +DL+G 
Sbjct: 465 PKSVAPYDLHILALNMKNDSQRELAEKLYANLKAEGYEVLYDDRAERAGVKFADSDLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P+++ VG +   +  VE+K R TG   ++S++E+  + S +
Sbjct: 525 PIRITVGKR-ADEGIVEVKIRQTGESTEVSVDELTAFISKQ 564


>gi|257065041|ref|YP_003144713.1| prolyl-tRNA synthetase, family II [Slackia heliotrinireducens DSM
           20476]
 gi|256792694|gb|ACV23364.1| prolyl-tRNA synthetase, family II [Slackia heliotrinireducens DSM
           20476]
          Length = 570

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 106/238 (44%), Positives = 159/238 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  ++P L+E+P DA+I S KL+ R GMI + + G+YS+LPLG + L  +  I+REE
Sbjct: 10  LRMSTMYVPTLKEDPSDADIPSAKLLTRAGMIRKEAAGLYSFLPLGLRVLRKIENIVREE 69

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +QSADLW +SGR+ +YG+EM+ + DR+D     GPT EEV+TD+ ++
Sbjct: 70  MDSHGGEELLMPFVQSADLWRQSGRWGAYGEEMMTMRDRHDNEFCLGPTAEEVITDLVKN 129

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   Y IQLKFRDE RPRFG++RSREF+MKDAYSFD   EG + +Y  M  +
Sbjct: 130 ELRSYKDLPKNLYHIQLKFRDERRPRFGLLRSREFIMKDAYSFDKDQEGLEVNYQLMRDA 189

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y R+  R+G++   ++A+ G IGG+ + EF+ LA+TGE ++          +      
Sbjct: 190 YSRMCERMGMEYRIVQADPGEIGGNGTEEFMTLAETGEAELVYCDCGYAADVEVGECH 247



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+      D+ P   +     RGIEVG IF  GTKYS  M A F   DG +    MG 
Sbjct: 385 WGDLCTVVAGDACPCCGKPLQAARGIEVGQIFKLGTKYSEAMGALFMDEDGTEKPFIMGC 444

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YG+G  R +AA +E SHD  GIIWP  +AP  +++I +        +A E + A+L+  G
Sbjct: 445 YGVGVSRCMAAAVEQSHDDMGIIWPVGIAPAHVAVIPLSTKPDEVTEAAEDVAAKLAAAG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +FA  DL+G+P QV++G + ++   VE+K+R TG + D+++++V++
Sbjct: 505 LEVCIDDRDERAGVKFADNDLIGWPAQVVIGKRGLAAGTVEVKNRKTGEKTDVAVDDVVS 564

Query: 437 YASHRF 442
           +     
Sbjct: 565 FVESLL 570


>gi|167895971|ref|ZP_02483373.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 7894]
          Length = 568

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 124/214 (57%), Positives = 159/214 (74%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 214



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 346 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 401

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 402 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 461

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 462 AIAPFEVVLCPMGYDRSDAVREAADKLYADLAAAGIDVILDDRGERPGVMFADWELIGVP 521

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 522 HRLVIGERGLKDGKIEYRGRRDAEATLLP 550


>gi|295105820|emb|CBL03363.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 637

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 160/437 (36%), Gaps = 49/437 (11%)

Query: 17  DAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +AE   H+ + R   I+        G+  +LP G + +  +   +R +    G  E+  P
Sbjct: 234 EAEKRDHRKLGRELGIYVMDPLAGAGLPLYLPKGARIIRTLQEWLRRDLYTRGYEEVITP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA-----DRNDK--AMIYGPTHEEVMTDIFRSHIKSY 125
            + +AD+W  SG Y  Y + M         D N +       P +      +++S + SY
Sbjct: 294 HIYNADVWKTSGHYGFYKENMYFFEINEGDDENPRMTEYAVKPMNCPGHVMLYKSELHSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  +++    +R E+     G++R+R F   DA+ F  T +        +      I
Sbjct: 354 RDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVF-CTRDQVVDEVVAILGLVDHI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +       + P     + +    A TG  +  C +  + + I   +  F     
Sbjct: 413 MSTFGFEY-EAEISTRPEKSIGTDDMWEHA-TGALKEACERHGLSYDINEGDGAFYG--- 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                              + K+ D++    + S   ++      FG         T++ 
Sbjct: 468 ----------------PKIDIKVKDAIGRTWQCSTVQVDFNMPERFG--------LTYRT 503

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +    M      G++     ++   + G   +W   +AP + +++ +        +
Sbjct: 504 EDNTEERPWMLHRAIFGSIERFLGILIEHYAGALPLW---LAPVQAAVLPLADR---HNE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A  ++  +L+  G  V   D  E +  + A A     P  V++G K + +  V ++ R  
Sbjct: 558 AAHELALKLADAGGRVEVYDQNEPMRVKIAKAQSQKIPYMVVLGDKEIENGTVSVRERHE 617

Query: 424 GIREDMSLEEVINYASH 440
           G      +E+++     
Sbjct: 618 GDLGAWDVEKLVQTIKD 634


>gi|289426352|ref|ZP_06428095.1| proline--tRNA ligase [Propionibacterium acnes SK187]
 gi|289153080|gb|EFD01798.1| proline--tRNA ligase [Propionibacterium acnes SK187]
          Length = 585

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 102/245 (41%), Positives = 148/245 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ASIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRVAVPD 243

Query: 242 IISLN 246
            + ++
Sbjct: 244 PLPID 248



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 413 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 472

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 473 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 531

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 532 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576


>gi|325923311|ref|ZP_08184984.1| prolyl-tRNA synthetase, family II [Xanthomonas gardneri ATCC 19865]
 gi|325546238|gb|EGD17419.1| prolyl-tRNA synthetase, family II [Xanthomonas gardneri ATCC 19865]
          Length = 564

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 153/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   ++A+SG IGGD S EF V+A +GE  +  S
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAASGEDSLAFS 224



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 1/161 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G++Y+  + AT    +GK   ++MG YGIG  R+VAA IE +HD  GII
Sbjct: 403 RGIEVGHVFQLGSQYAQALQATVIDENGKLAVMKMGCYGIGISRIVAAAIEQNHDEAGII 462

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP  +AP+++ +  I    D     A   +   L   G +   DD G + G+ FA  +LL
Sbjct: 463 WPAPMAPWQVVVCVINPKQDPQVIAAAGALLDELIAAGIEAALDDRGLRPGAMFADMELL 522

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G P +V+V  + ++    E + R     E++    + +   
Sbjct: 523 GIPHRVVVSERGLAAGTFEYRARTAEAAENLDKAGLFSRLE 563


>gi|312143669|ref|YP_003995115.1| prolyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904320|gb|ADQ14761.1| prolyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 568

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 156/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  +LP L+E+P +A+I SHKLMLR G++  HS GIYS+LPLG + +  +  I R+ 
Sbjct: 1   MRMSNLYLPTLKEDPAEADITSHKLMLRAGLMRNHSAGIYSYLPLGYRVIKKIENITRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +P LQ+A +W +S R+D +G  M+RL DR D+    GPTHEEV+TD+ + 
Sbjct: 61  MDASGAQEVLLPILQTAQIWKDSKRWDKFGPLMMRLRDRKDREYCLGPTHEEVVTDLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP   YQIQ K RDE+RPRFGVMR REF+MKDAYS D+  EG   SY  M+ +
Sbjct: 121 EIRSYKDLPLNLYQIQTKVRDEIRPRFGVMRGREFIMKDAYSLDIDYEGLDKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F   GL ++ + A++G +GG  SHEF+VLAD+GE QV          
Sbjct: 181 YEKTFAECGLDAVAVEADTGAMGGKDSHEFMVLADSGEDQVAFCDSCGYAA 231



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 1/214 (0%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N       ++N   +     +A    V + +      E K     GIEVGHIF  
Sbjct: 354 AVTGANQKDYHFKNVNIERDFQVEEFADLRLVKDGESCLQCTEGKLNIKAGIEVGHIFKL 413

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GTKYS  M A +   +G+   + MGSYGIG  R+VAA IE ++D  GIIWP ++AP++I 
Sbjct: 414 GTKYSENMGANYLDENGRTQPIVMGSYGIGITRLVAAAIEQNNDEYGIIWPKAIAPYQII 473

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +  +D+   +  E+IY  L   G +V  DD  E+ G +F  ++L+G PL++ +GS+ 
Sbjct: 474 ILAL-GNDEAVAEKSEEIYQELEAEGWEVLLDDRKERAGVKFNDSELIGIPLRLTIGSRS 532

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + + ++E   R    +  + ++ +    +   + 
Sbjct: 533 LENGEIEAMIRENNQKSKIKIDNLKEKTAELMAE 566


>gi|225849769|ref|YP_002730003.1| prolyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|254782911|sp|C0QTI8|SYP_PERMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225645347|gb|ACO03533.1| prolyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 563

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 157/240 (65%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P +AE+ SH  ++R G I Q + G+Y +LPLG + L  +  IIR+ 
Sbjct: 1   MRASQYFIPTLKEAPAEAEVPSHIYLIRAGFIRQLAAGLYEYLPLGFRVLKKIEGIIRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P L  A+LW E+GR+D YGKE+ R+ DR  +    GPTHEE +TD+ R 
Sbjct: 61  MDDAGALEVLLPILAPAELWQETGRWDVYGKELFRVEDRKGRFFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP  FYQIQ KFRDE RPR+G++R REF+MKDAYSFD++ E +  SY  M  +
Sbjct: 121 NIRSYKDLPKNFYQIQTKFRDEARPRYGLIRGREFIMKDAYSFDISEEMAVKSYEIMKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y +IF  LGL  + + A+ G IGG  SHEF+V    GE   VFC        + +   +F
Sbjct: 181 YKKIFDELGLDYLMVEADVGAIGGKYSHEFVVKVPNGEAHIVFCDNCGYAANVEAAKYEF 240



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 21/265 (7%)

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
              ++       LG+    +    GP+G D+     V AD         KD  +F + + 
Sbjct: 315 DCHLASSEELKDLGI----VEGFVGPMGLDI----PVYAD------ISVKDLHNFVVGAN 360

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTK 293
             D+  I    ++            D    +  D  P  K+      G+EVGHIF  GTK
Sbjct: 361 EEDYHYI----NVNIPRDFKPVDFVDFSTAREGDPCPVCKKPLNETTGLEVGHIFLLGTK 416

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  + A F   DG++  + MG YGIG  R++AA +E SHD  GIIWP+++APFK+ ++ 
Sbjct: 417 YSEALKAYFVDKDGREKPIVMGCYGIGVSRLMAAAVEQSHDENGIIWPENIAPFKLHILA 476

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +   D   +   E IY +  + G +V +DD     G++F  ADL+G P +++VG + V +
Sbjct: 477 LNIKDDQIKTVAEDIYTKAKEKGIEVLFDDRDISPGAKFKDADLIGIPYRIVVG-RGVKN 535

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
            KVEI+ R  G +E++ + E+ N+ 
Sbjct: 536 GKVEIQTRKDGKKEEIDINEIDNFL 560


>gi|290989139|ref|XP_002677200.1| threonyl-tRNA synthetase [Naegleria gruberi]
 gi|284090806|gb|EFC44456.1| threonyl-tRNA synthetase [Naegleria gruberi]
          Length = 672

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 159/437 (36%), Gaps = 41/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD  I            H ++ G+  +LP GQ+  +++ +++R E    G  E+
Sbjct: 272 MEEAKKRDHRIIGK--DQELWFFHPYAPGMVFFLPHGQRLFNSIQSLMRNEYWHRGYSEV 329

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +  +DLW  SG +D Y + M  L + +       P +      +F+   +SYR LP
Sbjct: 330 QTPNVFHSDLWKTSGHWDKYAENMFVL-EIDKAQHSLKPMNCPSHCLMFKHRTRSYRELP 388

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F    +  R+EL+    G+ R R+F   DA+ F   P+  K            I+   
Sbjct: 389 IRFADFGVLHRNELKGALTGMTRLRKFQQDDAHIF-CRPDQIKSEIMGALRMMQDIYKIF 447

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G         + P                  + +  +         +     +    +  
Sbjct: 448 GFGFRLF-LSTRP------------------EKYLGEISQWDEAEGQLEAALNEFGHS-- 486

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            ++     A      +  + D+L    + +   ++    F    ++ L  +A  K     
Sbjct: 487 WQKNEGDGAFYGPKIDILISDALKREHQCATVQLD----FQLPIRFDLTYAAEDKTE--- 539

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +     G++    A+      GK   WP  ++P +  ++ +      C +  EK+
Sbjct: 540 SRPVIVHRAIFGSLERFLAIATEHFGGK---WPFWLSPRQAIVVPVSNK---CNEYAEKV 593

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIRE 427
             RL +    V  D    +I  +   A L  +   ++VG K +    V I+ R +   + 
Sbjct: 594 QKRLHEAKYYVDVDLSSNRIDKKIRNAQLSQYNYILVVGPKEMESDSVNIRIRDSDKEQG 653

Query: 428 DMSLEE-VINYASHRFS 443
             ++EE +I +  ++  
Sbjct: 654 VKTIEELLIEFEGNKVQ 670


>gi|33866012|ref|NP_897571.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|73919836|sp|Q7U662|SYT_SYNPX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33638987|emb|CAE07993.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 611

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 152/441 (34%), Gaps = 38/441 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEEFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L PE       K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILKILDLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P           LA  G  +    K +                      
Sbjct: 381 FNTYEINLSTRPEKSIGDDAVWDLATKGLIEALERKGWKYKIDEGGG------------- 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
                  A      + K+ D++    + S   ++    F    ++       +  ADG K
Sbjct: 428 -------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERF----KLDYVAADGSK 472

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++     ++  ++ G    W   +AP ++ L+ +       +   E +
Sbjct: 473 QRPIMIHRAIFGSLERFFGIMTENYAGDYPFW---LAPEQVRLLPVT---DEVQPYAESL 526

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L++ G     D  G+++G      + +  P+  ++G+K    + V ++ R  G    
Sbjct: 527 LDQLTQAGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGV 586

Query: 429 MSLEEVINYASHRFSNNRPVL 449
            ++ +++  A    S     L
Sbjct: 587 AAVADLLRAAESANSQRAAGL 607


>gi|117928726|ref|YP_873277.1| prolyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|152074742|sp|A0LV31|SYP_ACIC1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117649189|gb|ABK53291.1| prolyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
          Length = 583

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 96/230 (41%), Positives = 136/230 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ SH+L++R G I + + GIYSWLPLG   L  +  I+R+E 
Sbjct: 4   RMSKLFVRTLREDPADAEVPSHRLLVRAGYIRRVAPGIYSWLPLGYAVLRKIEEIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L   +++  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  LHIGGQEVHFPALIPREIYEASGRWNEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   +QIQ K+RDE RPR G++R REF+MKD+YSFDL   G   SY     +Y
Sbjct: 124 YSSYKDYPVILFQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDAGLAASYTAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF RLGL+   + A SG +GG  S EF+ + + GE      ++     
Sbjct: 184 RRIFDRLGLRYRIVSAVSGAMGGSASEEFLAVTEVGEDAFVYCRNCDYAA 233



 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 4/172 (2%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                 +   A+GIE+GHIF  G KY+        G DG+   + MGSYGIG  R VAA+
Sbjct: 409 CGRCGGRLALAQGIEIGHIFQLGRKYTDAFELDALGPDGRPIRITMGSYGIGVSRAVAAI 468

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
            E  HD  G+IWP SV+P  + ++     +Q      E+  A L   G DV  DD     
Sbjct: 469 AEQCHDDAGLIWPRSVSPADVHVVIAGKGEQE--KLAEEFAAALDTAGLDVLLDDRVDAS 526

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            G +FA A+L+G P   +VG +  +   VE++ R +G R +++L + +    
Sbjct: 527 AGVKFADAELIGIPSIAVVG-RGAARGVVEVRDRGSGERRELALTDAVAELR 577


>gi|116669968|ref|YP_830901.1| prolyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|152074746|sp|A0JUT1|SYP_ARTS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116610077|gb|ABK02801.1| prolyl-tRNA synthetase [Arthrobacter sp. FB24]
          Length = 603

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 101/234 (43%), Positives = 142/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R SK FL  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG   L  V  +IREE
Sbjct: 3   LRLSKLFLRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEKVIREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MAAIGAQEVHFPALLPKEPYEATNRWTEYGEGIFRLKDRKGGDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SYN    +
Sbjct: 123 LYSSYKDLPLSIYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYNAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           YL+IF RLGL+ IP+ A +G +GG  S EF+   + GE     S       + +
Sbjct: 183 YLKIFERLGLEVIPVAATAGAMGGSRSEEFLHPTEIGEDTFVRSAGGYAANVEA 236



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 3/171 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             +ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ ES+HD 
Sbjct: 435 LETARGIEMGHIFQLGRKYAEALELKVLDQNGKQVVVTMGSYGVGVTRAVAALAESNHDA 494

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           KG++WP +VAP  + ++ +   +++   A E++   L   G +V +DD  +   G +F  
Sbjct: 495 KGLVWPRAVAPADVHVVAVGRGEEIF-AAAEQLSLELEAAGLEVIYDDRPKVSPGVKFGD 553

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           A+L+G P  + VG + + D  VEIK R +G  E++++E+ ++Y  +   + 
Sbjct: 554 AELIGVPTILAVG-RGLVDGVVEIKDRRSGEAENVAVEKAVDYVVNAVRSK 603


>gi|167721308|ref|ZP_02404544.1| prolyl-tRNA synthetase [Burkholderia pseudomallei DM98]
          Length = 568

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 124/214 (57%), Positives = 160/214 (74%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR+ DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRIKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +  P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYC 214



 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGI 282
            +  DF + +   D+     +  +      P    +D+ N K  D  P+ K      RGI
Sbjct: 346 ANMSDFVVGANEVDYH----IAGVNWGRDLPEPVVADIRNVKAGDPSPDGKGALDICRGI 401

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGH+F  GTKYS  M ATF    GK   + MG YGIG  R++ A IE + D KGI+WP+
Sbjct: 402 EVGHVFQLGTKYSDAMGATFIDESGKAQPMVMGCYGIGITRILGAAIEQNFDDKGIVWPE 461

Query: 343 SVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++APF++ L  +        R+A +K+YA L+  G DV  DD GE+ G  FA  +L+G P
Sbjct: 462 AIAPFEVVLCPMGYDRSDAVREAADKLYANLAAAGIDVILDDRGERPGVMFADWELIGVP 521

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            ++++G + + D K+E + R       + 
Sbjct: 522 HRLVIGERGLKDGKIEYQGRRDAEATLLP 550


>gi|269217138|ref|ZP_06160992.1| proline--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129275|gb|EEZ60360.1| proline--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 569

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 111/233 (47%), Positives = 164/233 (70%), Gaps = 1/233 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ ++P ++E+P DA++ S KL+ R GM+ + + G+YS+LPLG + L+ + +IIREE +
Sbjct: 1   MSELYMPTIKEDPADADVTSAKLLYRAGMLRKEASGLYSFLPLGMRVLNKLESIIREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+ +P +QS+DLW ESGR+ +YG+EMLR+ADR+      GPTHEEV+TD+ ++ +
Sbjct: 61  SHGAQEILMPFVQSSDLWRESGRWGAYGEEMLRMADRHGNEFCLGPTHEEVVTDLVKNEL 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SY++LP   YQIQLKFRDE RPRFG++RSREF+MKDAYSFD   EG   SY +M  +Y 
Sbjct: 121 RSYKDLPRNLYQIQLKFRDERRPRFGLLRSREFIMKDAYSFDADREGLDASYERMREAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +  R+GL+   + A++G IGGD  + EF+VLAD GE ++          + +
Sbjct: 181 NVCDRMGLEYRVVVADAGQIGGDGGTEEFMVLADNGEAELVYCDCGYAADVEA 233



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 106/187 (56%), Gaps = 2/187 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   +  D+ P+      SARGIEVG IF  G KYS  M ATF  ADG +    MG 
Sbjct: 383 WGDLCTVREGDACPQCGSPLRSARGIEVGQIFKLGDKYSRAMGATFMDADGSEKPFIMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA +E  +D  GIIWP ++AP  +++I +         A E++   L+  G
Sbjct: 443 YGIGVSRAMAAAVEQRNDEHGIIWPAAIAPAHVAVIPLSPKPDEVTAAAEELAGALADAG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F   DL+G+P+QV+VG + + +  VE+K R TG +E ++L++V++
Sbjct: 503 LEVVIDDRDERAGVKFNDNDLIGWPVQVVVGKRGLKEGVVEVKDRATGEKESVALDQVLS 562

Query: 437 YASHRFS 443
                 S
Sbjct: 563 AVERVLS 569


>gi|261405336|ref|YP_003241577.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261281799|gb|ACX63770.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 575

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 117/232 (50%), Positives = 151/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  +  IIR+E
Sbjct: 1   MRQSQLLMTTMRDVPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDAAGGQELLMPAVQPAELWKESGRYDVYGAELIRLYDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD   EG   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWEGLDASYRNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE  V    D     
Sbjct: 181 YERIFSRCGLMFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCSDCRYAA 232



 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 100/229 (43%), Gaps = 4/229 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G          +            +   L  +            D  N    +  P  
Sbjct: 343 PVGLRLKIMVDHEVAAMAEGITGANLEDTHLKGVRPGLDFSLEYVGDFRNVTEGEPCPRC 402

Query: 275 K--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  RGIE+GH+F  GTKYS  M+  +  ADG++  + MG YGIG  RV+AA+ E  
Sbjct: 403 GAPLQFHRGIELGHVFKLGTKYSDAMNGKYLDADGREKPLIMGCYGIGVSRVMAAIAEQR 462

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              + ++WP SVAPF++ +I +   D+      E IY  LS  G +   DD  E+ G +F
Sbjct: 463 ISDERLVWPMSVAPFRVHIIPVAVKDETQMQLAEHIYRELSGAGLEPLLDDRDERAGVKF 522

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             ADL G PL++IVG +  +  +VE      GI+  M  EE I  +   
Sbjct: 523 KDADLAGAPLRIIVG-RGAASGEVEWMG-EDGIKISMPAEEAIQRSREE 569


>gi|21230114|ref|NP_636031.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769896|ref|YP_244658.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|81304150|sp|Q4UQN5|SYP_XANC8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81860394|sp|Q8PCS4|SYP_XANCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21111643|gb|AAM39955.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575228|gb|AAY50638.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 564

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYTPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   ++A+SG IGGD S EF V+A++GE  +  S
Sbjct: 181 YIRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAESGEDSLAFS 224



 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +    RGIEVGH+F  G+KY+  + AT    +GK   ++MG YGIG  R+VAA IE +HD
Sbjct: 398 ELRLTRGIEVGHVFQLGSKYAEALQATVLDENGKAAVMKMGCYGIGISRIVAAAIEQNHD 457

Query: 335 GKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GI+WP  +AP+K+ +  I    D     A   +   L   G D   DD G + G+ FA
Sbjct: 458 DAGIVWPAPMAPWKVVVCVINPKQDAQVAAAAGDLLEELIAAGIDAALDDRGLRPGAMFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +LLG P +V+V  + ++    E + R     E++    + +  
Sbjct: 518 DMELLGVPHRVVVSERGLAAGTFEYRARTAESAENLDKAGLFSRL 562


>gi|119511594|ref|ZP_01630701.1| prolyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119463755|gb|EAW44685.1| prolyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 602

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 149/234 (63%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N T A E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNATNAQECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +     K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEVSLKETYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y  +  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D     
Sbjct: 181 YQAYSNMLRRSGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTEDGKYAA 234



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 1/214 (0%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           F   +  T +  + +      +                    PE    +ARGIEVGHIF 
Sbjct: 385 FVTGANETGYHVVGANWDEQFKLPELVVDIRKARPGDRAVHDPEQTLQTARGIEVGHIFQ 444

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  MSAT+    G+++ + MG YG+G  R+  + +E S+D  GIIWP ++AP+  
Sbjct: 445 LGTKYSQAMSATYTNEQGEENPLFMGCYGVGVSRLAQSAVEQSYDKDGIIWPVAIAPYHA 504

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +      D    +  +K+Y +L+K G +   DD  E+ G +F  ADL+G P +++ G +
Sbjct: 505 IVTIPNIKDAQQVEIAQKLYTQLNKAGVETLLDDRDERAGVKFKDADLIGIPYRIVTG-R 563

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +++ KVE+  R T   +++++EEV+N       
Sbjct: 564 AINNGKVEVVKRATRETQEIAIEEVVNTLQQWIK 597


>gi|45656749|ref|YP_000835.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|81830828|sp|Q72U06|SYP_LEPIC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|45599985|gb|AAS69472.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 576

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 112/227 (49%), Positives = 155/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G++ + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MKASKYILPTEKENPADAVVASHRLMIRAGLVRKSSAGLYFYLPLGLKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNSTGALEFDLPILTPSDFWEQSGRWSAMGKEMFRIQDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M V+
Sbjct: 121 LLKSYKDLPVNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDSSLDDTYQAMRVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  GE  +      
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCNSC 227



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E        +   + +GIEVGHIF  G KY+          +GK   +  G YGIG  R 
Sbjct: 389 EGDLCPNCSSPLKAEKGIEVGHIFKLGDKYTKAFGIQVLDQNGKSKTLTTGCYGIGVNRT 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A VIE  +D KGI WP S+APF++SL++I    +      E+ Y  L   G +VFWDD 
Sbjct: 449 MATVIEQCNDEKGIFWPISIAPFEVSLVSI-VKGEDQYSKIEEFYNVLINEGIEVFWDDR 507

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL----EEVINYASH 440
               G +   ++L+GFP+++ +G KF    ++ I +R    +ED  +    ++++     
Sbjct: 508 DLGPGFKLKDSELIGFPIRITIGKKFFESGEISIYNRK-KDQEDSFVFSGFDDLVARVES 566


>gi|28199512|ref|NP_779826.1| prolyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182682245|ref|YP_001830405.1| prolyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|81839496|sp|Q87B25|SYP_XYLFT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701358|sp|B2I7W6|SYP_XYLF2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28057627|gb|AAO29475.1| prolyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632355|gb|ACB93131.1| prolyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578519|gb|ADN62488.1| prolyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 564

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGEDVLAFS 224



 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD
Sbjct: 398 KICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHD 457

Query: 335 GKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GIIWP  +AP+++++  I    D V   A E + A L     D   DD G + G  FA
Sbjct: 458 VAGIIWPAPIAPWQVAVCVINPKKDPVITAAAEMLLAELQSADVDTVLDDRGLRPGVMFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             +L+G P +++V  + ++    E + R T + E++    ++     
Sbjct: 518 DMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENLDKTTLLTRIKA 564


>gi|297587908|ref|ZP_06946552.1| proline--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297574597|gb|EFH93317.1| proline--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 576

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 117/284 (41%), Positives = 179/284 (63%), Gaps = 1/284 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPVTQPREIWEESGRWKTFGPEMFKLQDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+D+Y+FD+  E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMEDSYTFDVDEEAMREAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E     
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGE-GVICYSDDSDFAATDEKAYVY 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
             ++  ++ +  +      +    E++ D L  +     + +++
Sbjct: 240 YQVNDENVEKLPSEKVLTPNCKTIEEVSDFLNVDAAHCLKAVDL 283



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 1/182 (0%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E   D   ++     RGIEVG+IF  G KYS  M+ATF   +GK+ +  MGSYGIG  R
Sbjct: 387 QEGDIDPETKSPLKFKRGIEVGNIFQLGQKYSKSMNATFLDENGKEQFFWMGSYGIGVTR 446

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            V+A++E +HD KG+IWP  VAP+ + +  +   +       EK+Y +L   G +V  DD
Sbjct: 447 SVSAIVEQNHDDKGMIWPLVVAPYHVIITIVNTKNDEQNTLAEKLYEKLLLQGVEVLLDD 506

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E++G +F   DL+G PL++ VG K   +  VE   R T    +MS +E         +
Sbjct: 507 RKERVGVKFNDRDLIGIPLRITVGKK-ADEDIVEFSERKTLENVEMSSQEAYEKVMEIIN 565

Query: 444 NN 445
            N
Sbjct: 566 AN 567


>gi|323342132|ref|ZP_08082365.1| threonine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464557|gb|EFY09750.1| threonine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 596

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 151/442 (34%), Gaps = 40/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+    RD +    +L L   M+ +   G   WLP G      ++        + G
Sbjct: 185 YLEWLEAAKARDHKKLGKELELF--MMSEFGPGFPFWLPNGMTLRHALDEYYYNAHIKRG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +    PT+ + +LW  SG +++Y + M   +  +D+     P +      ++++ + SY
Sbjct: 243 YVFTQTPTMLNKELWEVSGHWENYRENMYT-STIDDREFAIKPMNCPGGMLVYKNGLHSY 301

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++    R E      G+ R R F   DA+ F +  +  +    ++      I
Sbjct: 302 RDLPIRLAEMGHVHRHEASGALNGLFRVRSFTQDDAHLF-MREDQLQDEIVEILDFINEI 360

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL    +   + P                E +     D  D    +          
Sbjct: 361 YSTFGLSY-SIELSTRP----------------EDKYIGDIDVWDRSEQALKEACMAAGV 403

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D       +          R  + G +             T+  
Sbjct: 404 DFKINEGDGAFYGPKLDFKVRDSLN----------RVWQCGTV-QLDMNLPERFDLTYVA 452

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK    + +     G++     ++     G   +W   +AP +I +I +    +   D
Sbjct: 453 EDGKKKRPIMLHRAIFGSIERFIGILIEHFAGGFPLW---MAPKQIEIIPVNT--EFHMD 507

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E++G +   A     PLQ+I+G + + D  V ++    
Sbjct: 508 YANEVCDLLLEKGIRAHVDGRNEKLGYRLREAQKNKIPLQLIIGDQEIEDRSVNVRRYGE 567

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +    L+  +    +  S  
Sbjct: 568 RAQNPFDLDVFMQMVENEISTR 589


>gi|283769478|ref|ZP_06342374.1| threonine--tRNA ligase [Bulleidia extructa W1219]
 gi|283103746|gb|EFC05132.1| threonine--tRNA ligase [Bulleidia extructa W1219]
          Length = 584

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 169/445 (37%), Gaps = 36/445 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           + +L +L+E   RD         L+  +  +    G+  WLP G      ++  I E++ 
Sbjct: 169 EAYLQVLEEAKERDHRKLGK--DLKMFLFSETVGSGLPMWLPNGFTVRRLLSDYIMEKEI 226

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P++ S  L+  SG    Y ++M  + +R+  + +  P +      I+++ +
Sbjct: 227 ALGYEHVLTPSVASTKLYEVSGHLAHYQEDMFPIMERDGDSYVLRPMNCPEHMIIYKASL 286

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +I   FR E      G+ RSR F   D++ F L P+        +    
Sbjct: 287 HSYRDLPVRIAEIAHDFRFEASGALTGIERSRSFTQNDSHIF-LRPDQIAEEIKNVTKLI 345

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +++  G K    R                  D   T  +      D    SEN   + 
Sbjct: 346 LDVYNDFGFKDYSFRLSLR--------------DLNNTDKYFGN--DDLWTRSENELREV 389

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +  +     +     A      + ++  +L  +  +S   ++    +    ++       
Sbjct: 390 LKEMKVPYYEAEGEAAFYGPKIDVQVKSALGHDVTLSTIQLD----YQLPERF----ELE 441

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D +    V +    +G++    A +     G   + P  +AP ++ +I +    + 
Sbjct: 442 YVNKDNQKVRPVVIHRAILGSLDRFVAFLLEETKG---VLPLWLAPLQVEVIPVN--SEA 496

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   KI   L + G     DD  E++G +   A +   P+Q++VG++ + +  V ++ 
Sbjct: 497 HGDYASKINRALKREGIRSHLDDRNEKLGYRIREAQMNKVPIQIVVGNRDIENETVTVRT 556

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
             +      S ++ +N    + +  
Sbjct: 557 YGSKEEVTHSFKDYLNQLVEQIAQK 581


>gi|332528434|ref|ZP_08404426.1| prolyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
 gi|332042113|gb|EGI78447.1| prolyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 581

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SH+LM R GMI +   GIY+++P+G + ++ V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHQLMTRAGMIKKLGAGIYTYMPMGLRVINKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+++P +Q A+LW E+GR++  G E+LR+ DR+++  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIELTMPVIQPAELWQETGRFEKMGPELLRIQDRHERDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  ++ SY  M  +
Sbjct: 121 EFKSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPASAQISYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y   F R GL+   + A+SG IGGDLS EF V+A TGE  +   
Sbjct: 181 YRAAFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIIYC 224



 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/212 (36%), Positives = 111/212 (52%), Gaps = 3/212 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
              +  D         +     A  +D+ N    D  P+ K      RGIE+GHIFY GT
Sbjct: 369 CGANEVDFHLTGVNWGRDLPEPALVADLRNVVEGDLSPDGKGVLAIERGIEIGHIFYLGT 428

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  M+ATF   +GK  + +MG YGIG  R+ AA IE +HD KGIIWPD++APF + + 
Sbjct: 429 KYSKAMNATFLDENGKPQFFEMGCYGIGITRLPAAAIEQNHDAKGIIWPDAIAPFTVVVC 488

Query: 353 NIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I        + A EK+YA L   G DV  DD GE+ G+ FA  +L+G P +V +G + +
Sbjct: 489 PINPDRSPEVKTAAEKLYAELLAAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRTL 548

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + KVE +HR       +++ +   +   +  
Sbjct: 549 KEGKVEYQHRRDAEATPLAVGDAAAFVLGKLK 580


>gi|302379784|ref|ZP_07268268.1| proline--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302312372|gb|EFK94369.1| proline--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 576

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/284 (41%), Positives = 178/284 (62%), Gaps = 1/284 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPITQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVDEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E     
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGE-GVICYSDDSDFAATDEKAYVY 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
             ++  ++ +  +      +    E++ D L  +     + +++
Sbjct: 240 YQVNDENVEKLSSEKVLTPNCKTIEEVSDFLNVDAAHCLKAVDL 283



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 106/221 (47%), Gaps = 3/221 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +   ++           +             E   D   ++     RGIEV
Sbjct: 350 KQMKNFVVGANEENYHIKNVNYGDDFEGEIVEDLLMVQ--EGDIDPETKSPLKFKRGIEV 407

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G+IF  G KYS  M+ATF   +GK+ +  MGSYGIG  R V+A++E +HD KG+IWP  V
Sbjct: 408 GNIFQLGQKYSKSMNATFLDENGKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMIWPLVV 467

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+ + +  +   D+      EK+Y +L   G +V  DD  E+ G +F   DL+G PL++
Sbjct: 468 APYHVIITIVNTKDEEQNTLAEKLYEKLLLQGVEVLLDDRKERAGVKFNDRDLIGIPLRI 527

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VG K   +  VE   R T    +MS  E  +      + N
Sbjct: 528 TVGKKAAEE-IVEFSERRTLENVEMSSTEAYDKVMEIINAN 567


>gi|238926724|ref|ZP_04658484.1| proline--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885256|gb|EEQ48894.1| proline--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 570

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 149/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHQLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ ++LW ESGR+ +YG EM+R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPSELWEESGRWGAYGAEMIRVKDRHGREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+MKD YSFD    G   SY KM V+
Sbjct: 121 EVRSYKQLPLMLYQIQDKFRDERRPRFGVMRSREFIMKDLYSFDKDIAGMNESYRKMSVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C        
Sbjct: 181 YTNIFTRCGLNFRAVEADSGAIGGGHSEEFTVLAPEGESRIACCDACSYAA 231



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 102/219 (46%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
              M   +   N       ++N   +      A    V                 RGIE 
Sbjct: 350 AMRMHNAVSGANEADFHYTNVNPKRDFGAVTVADIRLVEEGDACPVCENGHLHIGRGIEA 409

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G IF  GTKYS  M ATF    GK   +QMG YGIG  R +AA IE +HD  GIIWP ++
Sbjct: 410 GQIFALGTKYSKAMGATFLDEAGKTQPLQMGCYGIGVGRTMAAAIEQNHDEHGIIWPRAI 469

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ + A  +      E++Y  L   G DV  DD  E+ G +F   DL+G+P+++
Sbjct: 470 APYEVVVVAVNAKAEEQLAYAEEVYEELRAAGVDVLLDDRRERAGVKFNDCDLIGYPVRI 529

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +G K + +  +E+K R +G   + + +  +       +
Sbjct: 530 AIGPKTIENGTIEVKIRKSGALVNFARDTYLKGVQDMLA 568


>gi|157364839|ref|YP_001471606.1| threonyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166987326|sp|A8F8Q8|SYT_THELT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157315443|gb|ABV34542.1| threonyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 638

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREE 60
           K +L +L+E    A    H+ +   L    I    + G+  + P G   L  +    R+ 
Sbjct: 226 KNYLDLLEE----ARKRDHRKLGPALDIFFIDFDVAAGMPVFTPNGTVILKELMEFSRQL 281

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + S  LW  SG ++ Y + M     + ++     P +      ++++
Sbjct: 282 HIEYGYEEVMTPLVMSEKLWRMSGHWEHYKENMY-FTTKEEQQFAIKPMNCPGHILVYKN 340

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  F++     R E      G+ R R F   DA+ F    +  ++    +  
Sbjct: 341 KPVSYRDLPVRFFEFGKVHRYERSGVLHGLFRVRSFTQDDAHIF-CRIDQVENEIAGVIN 399

Query: 180 SYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              RI+ + G         + P   +G + + E    A     +       + + +  + 
Sbjct: 400 LVHRIYSQFGFDY-SAELSTMPEDHMGDEATWEKATEA----LRKAMESVGLQYVVKEKE 454

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             F                        +  + DS+    + +   ++      FG  Y+ 
Sbjct: 455 GAFYG-------------------PKIDFHVRDSIGRTWQCATIQLDFLMPQRFGLVYT- 494

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M   +         V +     G++     ++   + G    W   +AP ++ +I I  
Sbjct: 495 SMDGKY------QQPVMIHRAIYGSLERFLGILIEHYAGAFPTW---LAPVQVIIIPIA- 544

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  EK+ +   K G  V  D   E +G +   A  +  P  ++VG +      V
Sbjct: 545 --DRHFEYAEKVKSEFVKNGVRVKIDARRETVGYKIRDAQSMKIPYMLVVGDREADSEAV 602

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R +       ++ V+   +   +  
Sbjct: 603 SVRTRGS-DFGSKPVKLVLEKITEEIATR 630


>gi|71898157|ref|ZP_00680343.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Ann-1]
 gi|71732131|gb|EAO34187.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Ann-1]
          Length = 564

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGEDVLAFS 224



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD
Sbjct: 398 KICIARGIEVGHVFQLGRKYTEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHD 457

Query: 335 GKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GIIWP  +AP+++++  I    D V   A E + A L     D   DD G + G  FA
Sbjct: 458 VAGIIWPAPIAPWQVAVCVINPKKDPVITAAAELLLAELQSADVDTVLDDRGLRPGVMFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             +L+G P +++V  + ++    E + R T + E++    ++     
Sbjct: 518 DMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENLDKTTLLTRIKA 564


>gi|71274618|ref|ZP_00650906.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Dixon]
 gi|170730883|ref|YP_001776316.1| prolyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|226701359|sp|B0U4A7|SYP_XYLFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71164350|gb|EAO14064.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Dixon]
 gi|167965676|gb|ACA12686.1| Proline--tRNA ligase [Xylella fastidiosa M12]
          Length = 564

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+       Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLSDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGEDVLAFS 224



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD
Sbjct: 398 KICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHD 457

Query: 335 GKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GIIWP  +AP+++++  I    D V   A E + A L     D   DD G + G  FA
Sbjct: 458 VAGIIWPAPIAPWQVAVCVINPKKDPVIIAAAELLLAELQSADVDTVLDDRGLRPGVMFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             +L+G P +++V  + ++    E + R T + E++    ++     
Sbjct: 518 DMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENLDKTTLLTRIKA 564


>gi|255710799|ref|XP_002551683.1| KLTH0A05192p [Lachancea thermotolerans]
 gi|238933060|emb|CAR21241.1| KLTH0A05192p [Lachancea thermotolerans]
          Length = 740

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 155/440 (35%), Gaps = 42/440 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A +  H+ + R       ++ S G   WLP G +  +N+  ++R E  + G  E+  P
Sbjct: 328 AEASMRDHRKIGREQELFYFNEMSPGSCFWLPHGTRIYNNLVDLMRAEYRKRGFDEVITP 387

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M        +     P +      +F+S  +SY+ LP+  
Sbjct: 388 NMYNSKLWETSGHWGNYKENMFTFEVEK-ETFGLKPMNCPGHCILFKSRERSYKELPWRV 446

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F       +      F     ++   G +
Sbjct: 447 ADFGVIHRNEFSGALTGLTRVRRFQQDDAHIFCA-QNQIEQEIENCFSFLQYVYGVFGFE 505

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A+                 P +                
Sbjct: 506 F-KMELSTRPEKFVGEIETWNNAEAKLESALRKWGGNWELNPGDG--------------- 549

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDH 310
                A      + K+ D+L    + +   ++    F    ++ L   +     +   + 
Sbjct: 550 -----AFYGPKIDIKISDALRRWHQCATIQLD----FQLPNRFELEFKSKDNQENENYER 600

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++     GK   WP  ++P ++ ++ +       ++  +++  
Sbjct: 601 PVMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQVLVVPVGVK---YQEYAQEVRD 654

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIR 426
           +L +       D  G  +  +     +L +    IVG + +++  V I++R      G  
Sbjct: 655 KLCEQDFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMTEKSVNIRNRDVIEQQGKN 714

Query: 427 EDMSLEEVINYASHRFSNNR 446
             ++ E V+          R
Sbjct: 715 ATIAFETVLQQLKKLKEEKR 734


>gi|260424720|ref|ZP_05778980.1| proline--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402944|gb|EEW96491.1| proline--tRNA ligase [Dialister invisus DSM 15470]
          Length = 576

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA + SH+ ML+ GM+ + S G+Y++LPL  +++  V  I+REE
Sbjct: 3   MLASKLYSPTLREIPSDAVVVSHQYMLKAGMMRKVSNGLYAFLPLALRSVRKVEDIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G+ E+ +P  Q A++W +S R+D YG+EM +L DR+      GPTHEE++T + + 
Sbjct: 63  MNAIGSQEILMPITQPAEIWKQSERWDVYGEEMFKLNDRHGHEYCLGPTHEELVTVLAKM 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 123 DTSSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDMDEEGLDRQYHLMYDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL   P+ A+SG IGG  SHEF V+AD+GE  +   KD     
Sbjct: 183 YTRIFTRCGLHFRPVVADSGAIGGSGSHEFEVIADSGEADIVYCKDCDFAA 233



 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 12/260 (4%)

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             R GL    +     PIG   +  F ++ DT         +       + +  +  +  
Sbjct: 323 LKRCGL----IAGYISPIGLKKADNFEIIVDTT----VMEMEDACCGANAVDKHYVHVNP 374

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +           +   +             +GIEVG +F  GTKYS  +  T+  
Sbjct: 375 KRDFGDVRVET----IRLITAEDCCPKCGGMIELKKGIEVGQVFKLGTKYSEKLGCTYLD 430

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H + MG YGIG  R VAA IE +HD  GIIWP ++AP+++ ++     D+   +A
Sbjct: 431 RDGKTHPMVMGCYGIGITRTVAASIEQNHDKDGIIWPVAIAPYEVVIVPANNKDEGVMNA 490

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +Y ++     +V  DD  E+ G +F  ADL+G+P++V +G K+     VE++ R +G
Sbjct: 491 ARHLYDKMEDCRDEVILDDRDERAGIKFKDADLIGYPIRVTIGKKWKESGLVEVRLRRSG 550

Query: 425 IREDMSLEEVINYASHRFSN 444
           +  +++L +           
Sbjct: 551 VVSEVALADCKTKVLEMLEE 570


>gi|114600744|ref|XP_001153847.1| PREDICTED: threonyl-tRNA synthetase isoform 7 [Pan troglodytes]
          Length = 715

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 148/441 (33%), Gaps = 51/441 (11%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--- 575

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                     V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 576 -------KRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 622

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +K+  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 623 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRT 682

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 683 RDNKVHGERTISETIERLQQL 703


>gi|73981325|ref|XP_850160.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 2
           [Canis familiaris]
          Length = 721

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/461 (20%), Positives = 160/461 (34%), Gaps = 59/461 (12%)

Query: 8   LPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E   +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R 
Sbjct: 290 LRAWEEWKGEAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRR 349

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----------------ADRNDKAMIYGP 108
           G  E+  PTL SA LW  SG ++ Y ++M  L                   +   +   P
Sbjct: 350 GFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTSHSTDTLALKP 409

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      +F    +S+R LP       +  R E      G+ R R F   DA+ F   P
Sbjct: 410 MNCPAHCLMFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIFCA-P 468

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  +            ++  LG     +   + P G                        
Sbjct: 469 DQLEEEIQGCLDFLRSVYAVLGFSFR-LALSTRPSG-----------------FLGESCL 510

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            D          ++      +     A Y    DVH   L D+L    +     ++    
Sbjct: 511 WDQAEQVLQRALEEFGEPWDLKPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD---- 563

Query: 288 FYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +KG  G  +  V +    +G++  +  V+  S+ GK   WP  ++P
Sbjct: 564 FQLPLRF----DLQYKGQAGVLERPVLIHRAVLGSVERMLGVLAESYGGK---WPLWLSP 616

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVI 405
           F++ +I + A  +   +   +   RL   G     D D G  +  +   A L  +  Q +
Sbjct: 617 FQVVVIPVGAEQE---EYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFV 673

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           VG K  S   V I+ R      +  L E +        N R
Sbjct: 674 VGQKEQSKKTVNIRTRDNRQLGERDLTEAVQRLLE-LQNTR 713


>gi|71033673|ref|XP_766478.1| threonyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68353435|gb|EAN34195.1| threonyl-tRNA synthetase,  putative [Theileria parva]
          Length = 779

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 156/443 (35%), Gaps = 35/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L + +    +A+   H+ +   L+       HS G   WLP G K  + +   +R+ 
Sbjct: 361 KEQLKMYKHRIEEAKQRDHRTIGTDLKLFYFDTVHSPGSCFWLPNGAKIYNRLVEFMRDN 420

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + S DLW +SG YD+Y + M  L +  D      P +      +F+ 
Sbjct: 421 YRIRGYQEVITPNIFSCDLWKQSGHYDNYKENMY-LFNLEDTEWGMKPMNCPGHCLMFKH 479

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY+ LP       +  R+EL     G+ R R F   DA+ F  T E        +  
Sbjct: 480 LFLSYKQLPLRLADFGVLHRNELTGSLSGLTRVRRFQQDDAHIF-CTREQIMEEVLNILT 538

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +++     +    +  + P      +E   +A+    +            P +    
Sbjct: 539 FIGKVYSLFDFRY-EFKLSTKPAKALGDNELWEVAEKSLEEALNKTGAKWILNPGDG--- 594

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  LFD L    +     ++      F  +Y     
Sbjct: 595 -----------------AFYGPKIDVVLFDCLDREHQCGTIQLDFNLPIRFNLEYRDKSE 637

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           ++ +    G +  V +     G++    A++     GK   W   ++P ++  I I    
Sbjct: 638 SSAENVRCGFNRPVIIHRAIFGSIERFVAIVLEQTKGKLPFW---LSPNQLLFIPIT--- 691

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++Y + + +G +V  D     I  +        +    IVG + V    V +
Sbjct: 692 DSHLDYALELYEKFNALGYNVDVDRSNNTINKKIKFGQQQRWNYMGIVGDREVETRTVSL 751

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  +SL+E++     +
Sbjct: 752 RPRDSDEQNVVSLDELVKLFESQ 774


>gi|301167107|emb|CBW26686.1| threonyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 584

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 154/444 (34%), Gaps = 42/444 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K  L  L+E    A+   H+ +   L     +  +     ++P G    + +   +R
Sbjct: 167 KQLKAHLNFLEE----AKKRDHRKLGKDLELFHFNSVAPASPFFMPKGAFVYNRLIEFMR 222

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E   +    E+  P +  +DLW  SG Y+ Y + M   +  +++     P +      +F
Sbjct: 223 EIYRKYDYQEVITPQILDSDLWHTSGHYEHYKENMY-FSRIDEREYAVKPMNCPCHMLMF 281

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + +  SYR+LP  +       R E      G+ R R F   DA+ F +  +G +    K+
Sbjct: 282 KHYKYSYRDLPMRYADFGRLHRYEKAGAVTGLTRVRTFCQDDAHIF-IDMDGIQDEITKL 340

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              +   +   G   I +   + P            A+    +         F    +  
Sbjct: 341 MEMFFICYEHFGFTGIKVNLSTRPEKKSGDDATWDKAENALEEALKKSGHEYFIKEGDG- 399

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      + ++ D+L    ++    ++      FG  Y+  
Sbjct: 400 -------------------AFYGPKIDVEIADALGRYYQLGTIQLDFQLPERFGLSYTNA 440

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                      +  V +    +G++     V      G    W   +AP +  ++ +   
Sbjct: 441 QG-------NDERPVVIHRALLGSLERFFGVYLEHVAGVFPFW---LAPEQAVIVPVN-- 488

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++   D   K+ + L  +G  V  DD  E +G +         P  +++G + + ++ V 
Sbjct: 489 NEFHLDFANKLQSELFAMGLRVKVDDRNESMGYKTRQIQKSKAPFMIVIGDREMENNSVS 548

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++       E +++EE+    S  
Sbjct: 549 LRKHGEKKTESLTIEELKKLFSEL 572


>gi|313836817|gb|EFS74531.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314929774|gb|EFS93605.1| prolyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314972203|gb|EFT16300.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 581

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/244 (42%), Positives = 148/244 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + L  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVLRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  GIGAQEVSFPALLASDPYKETGRWAEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDDAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S D     + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVHSADGYAANVEAVRIAAPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   +RGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLSRGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG++WP  VAPF + ++       +  +   +I + L++VG +V  DD     G
Sbjct: 469 EGTCDEKGLVWPREVAPFDVQVLATGKGTDILDE-ATRIASELAEVGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +FA +++LG P  V+VG + + D  VE++ R TG 
Sbjct: 528 VKFADSEILGVPTSVVVG-RGLKDGLVEVRDRATGE 562


>gi|198425233|ref|XP_002123203.1| PREDICTED: similar to novel prtoein similar to vertebrate
           threonyl-tRNA synthetase (TARS, zgc:92586) [Ciona
           intestinalis]
          Length = 630

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 163/445 (36%), Gaps = 41/445 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++ + F    +   RD      +        H+ S G   + P G    + + + I+EE
Sbjct: 203 MKQWQKFQ--EEAKQRDHRKIGKE--QELFFFHELSPGSCFFFPRGAFIYNTLISFIKEE 258

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M   +    +     P +      +F  
Sbjct: 259 YRKRGFEEVVSPNIYNSKLWMTSGHWQHYDQNMFSFSVEK-ETFALKPMNCPGHCLMFSH 317

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP  F    +  R+EL     G+ R R F   DA+ F   PE  K        
Sbjct: 318 RSRSWRELPIRFADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRPEQIKDEMRGALN 376

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     +   + P           + D  E Q+       D P      D 
Sbjct: 377 FLKAVYDTFGFSF-KLFLSTRPEKFLG---DPGMWDDAEKQLEECLVEFDHPWKLNPGDG 432

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + ++ D+L    + +   ++    F    +++L   
Sbjct: 433 -----------------AFYGPKIDIQIMDALRRPHQCATIQLD----FQLPIRFNLNYV 471

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                   K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ + +   
Sbjct: 472 TGEGDE--KKRPVIIHRAILGSVERMIAILTENYGGK---WPLWLSPRQVMILAVSSK-- 524

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +  E +  R+ + G  V  + D G  +  +   A L  +   ++VG K  ++  V I
Sbjct: 525 -YDEYAESVRLRMHEAGIQVDLEKDPGLTLNKKIRTAQLEQYNFILVVGEKEETNGTVNI 583

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R   +  +++++ VI+   H   
Sbjct: 584 RTRDNKVHGELTVQAVIDRLLHLVK 608


>gi|145511956|ref|XP_001441900.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409161|emb|CAK74503.1| unnamed protein product [Paramecium tetraurelia]
          Length = 609

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 175/444 (39%), Gaps = 52/444 (11%)

Query: 4   SKYFLPILQENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           SK F    ++   D      H+ +    + ++ + G   +LP G K  + +  +IR+E  
Sbjct: 212 SKLFQEYQKQQECDHRHIGKHQHL---FVFNKLAPGSAFFLPHGTKIYNKLIEMIRKEYR 268

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L + +LW +SG  D Y + +      +D  M   P +      ++++  
Sbjct: 269 ERGYQEVITPQLFNKELWKQSGHLDKYAENIYMT---HDHQMGLKPMNCPGHCLLYKTLQ 325

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+ LP  F    +  R+E+     G+ R R+F   DA+ F  T E  +          
Sbjct: 326 HSYKELPIRFADFGVLHRNEVHGTLTGLTRVRKFTQDDAHIF-CTIEQIQQEIKNTLDFL 384

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R++ R G  +  +   + P   D     + + D  E Q+  +     +     +  F  
Sbjct: 385 SRVYGRFGF-TWELTLSTRP---DKYIGDLQIWDEAERQLRIALSDTQYTENPGDGAFYG 440

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
                 I +                             +  + G I      ++LP    
Sbjct: 441 PKIDVLIRDHNQ--------------------------KQHQCGTI---QLDFNLPERFD 471

Query: 300 ATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   + K    V +    +G++  + A++   ++GK   WP  ++P ++ +I +    
Sbjct: 472 LTYHHENDKFSRPVMIHRAILGSIERMMAILTEQYNGK---WPFWLSPRQVMIIPV---S 525

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           ++ +   ++IY +L K+G +V  +D  + +G +    ++L F   + VG+K    + V++
Sbjct: 526 EISKQYAKEIYDQLYKLGFEVELEDTEQTLGKRIRKGEMLHFNYIITVGAKEQESNTVDV 585

Query: 419 KHR-LTGIREDMSLEEVINYASHR 441
           + R      + M L+E I   +  
Sbjct: 586 RERGDNHKHQSMKLDEFITKINQL 609


>gi|313619139|gb|EFR90927.1| prolyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 409

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 150/235 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLAILTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S           
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEM 235


>gi|77747502|ref|NP_297735.2| prolyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|114152281|sp|Q9PG57|SYP_XYLFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGNQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGEDVLAFS 224



 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD
Sbjct: 398 KICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHD 457

Query: 335 GKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GIIWP S+AP+++++  I    D V   A E + A L     D   DD G + G  FA
Sbjct: 458 VAGIIWPASIAPWQVAVCVINPKKDPVITAAAEVLLAELQSADVDTVLDDRGLRPGVMFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             +L+G P +++V  + ++    E + R T + E++    ++     
Sbjct: 518 DMELIGIPHRIVVSERGLAAGTYEYRARHTAMVENLDKTTLLMRIKA 564


>gi|188993111|ref|YP_001905121.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|226701356|sp|B0RVJ2|SYP_XANCB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167734871|emb|CAP53083.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 564

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 154/224 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYTPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   ++A+SG IGGD S EF V+A++GE  +  S
Sbjct: 181 YIRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAESGEDSLAFS 224



 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +    RGIEVGH+F  G+KY+  + AT    +GK   ++MG YGIG  R+VAA IE +HD
Sbjct: 398 ELRLTRGIEVGHVFQLGSKYAEALQATVLDENGKAAVMKMGCYGIGISRIVAAAIEQNHD 457

Query: 335 GKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GI+WP  +AP+K+ +  I    D     A   +   L   G D   DD G + G+ FA
Sbjct: 458 DAGIVWPAPMAPWKVVVCVINPKQDAQVAAAAGDLLEELIAAGIDAALDDRGLRPGAMFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             +LLG P +V+V  + ++    E + R     E++    + +   H
Sbjct: 518 DMELLGIPHRVVVSERGLAAGTFEYRARTAESAENLDKAGLFSRLGH 564


>gi|303234780|ref|ZP_07321406.1| proline--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302494121|gb|EFL53901.1| proline--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 576

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/284 (41%), Positives = 178/284 (62%), Gaps = 1/284 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPVTQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVNEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E     
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGE-GVICYSDDSDFAATDEKAYVY 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
             ++  ++ +  +      +    E++ D L  +     + +++
Sbjct: 240 YQVNDENVEKLSSEKVLTPNCKTIEEVSDFLNVDAAHCLKAVDL 283



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +   ++           +             E   D   ++     RGIEV
Sbjct: 350 KQMKNFVVGANEENYHIKNVNYGDDFEGEIVEDLLMVQ--EGDIDPETKSPLKFKRGIEV 407

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G+IF  G KYS  M+ATF   +GK+ +  MGSYGIG  R V+A++E +HD KG+IWP  V
Sbjct: 408 GNIFQLGQKYSKSMNATFLDENGKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMIWPLVV 467

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+ + +  +   D+      EK+Y +L   G +V  DD  E++G +F   DL+G PL++
Sbjct: 468 APYHVIITIVNTKDEEQNTLAEKLYEKLLLQGVEVLLDDRKERVGVKFNDRDLIGIPLRI 527

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VG K   D  VE   R T    +MS  E         ++N
Sbjct: 528 TVGKKAAED-IVEFSERRTLENVEMSSTEAYEKVMEIINSN 567


>gi|326693745|ref|ZP_08230750.1| threonyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 654

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 154/437 (35%), Gaps = 38/437 (8%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +A+   H+ + R   +     +   G+  WLP G      V   I +++   G   +  P
Sbjct: 241 EAKERDHRTIGRDMDLFFTSQEVGSGLPVWLPNGATIRRQVERYITDKELANGYQHVYTP 300

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + +L+  SG +D Y ++M    D  D   +   P +      +F+   +SYR LP  
Sbjct: 301 VLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFKHKPRSYRELPIR 360

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E      G+ R RE  + D ++F + PE  +  +  +    + ++    +
Sbjct: 361 IAELGMMHRYEKSGALTGLSRVREMTLNDGHTF-VEPEKLEEEFKSILTMMMEVYRDFNI 419

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T+ +   D M     ++     D + L+    
Sbjct: 420 TDYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQAQLKRAMDDLGLD--YY 463

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-- 308
           +     A      + +   +L   + +S   ++    F    +++L    T+ GADG+  
Sbjct: 464 EAEGEAAFYGPKLDVQTKTALGNEETMSTIQLD----FLLPERFNL----TYIGADGQDN 515

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    +G M    A +   + G    W   +AP ++ +I +           E+I
Sbjct: 516 HRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LAPLQVQIIPVNLG--AHGAYAEQI 570

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G     +    ++G     A     P  +++G   V    V ++         
Sbjct: 571 KKQLQDAGLRANVETKDAKMGYLIREAQTNKIPYTLVLGDSEVEGQTVTVRKYGEEKTTT 630

Query: 429 MSLEEVINYASHRFSNN 445
           M + +         +N 
Sbjct: 631 MPIADFQAEILADVANY 647


>gi|164686598|ref|ZP_02210626.1| hypothetical protein CLOBAR_00190 [Clostridium bartlettii DSM
           16795]
 gi|164604327|gb|EDQ97792.1| hypothetical protein CLOBAR_00190 [Clostridium bartlettii DSM
           16795]
          Length = 566

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 119/266 (44%), Positives = 153/266 (57%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DAEI SH+LMLR GMI + + GIY+ LP+G +    V  IIREE N  G
Sbjct: 1   MLMPTLKEVPSDAEITSHQLMLRAGMIRKMASGIYNQLPMGIRVFRKVEDIIREEMNAKG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A E+S   L  A+LW ESGR+D  G EM RL DRN +    GPTHEE  T I R+ I SY
Sbjct: 61  AQEISCALLVPAELWQESGRWDVMGPEMFRLKDRNGRDYCLGPTHEETFTHIVRNEITSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQI+ KFRDE RPRFGVMR+R F MKDAYSFD   EG   SY+ MF +Y RIF
Sbjct: 121 KQLPLNLYQIETKFRDERRPRFGVMRTRNFTMKDAYSFDADQEGLDKSYDDMFDAYTRIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            R  L + P++A+SG +GG  S EF+V ++ GE ++             + T  +   S 
Sbjct: 181 ARCELDNSPVQADSGAMGGSASAEFMVKSEVGEDEIVFCSGCDYAANIEKATSVNHEAST 240

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSL 271
             + E           +   + F  +
Sbjct: 241 EEMKEMSEIETPNVHTIEELQDFFKM 266



 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 86/248 (34%), Positives = 121/248 (48%), Gaps = 17/248 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GPIG    + FI      +  V    +   + I + N                       
Sbjct: 329 GPIGIKADYLFIDQEVVDQRNVIVGANKTGYHIQNANFG--------------RDFEGQV 374

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D  N +  D  P+  +     RG+EVGHIF  GTKYS  M ATF   +GK   + MG Y
Sbjct: 375 GDFRNVQEGDKCPKCGQPLEIMRGVEVGHIFKLGTKYSESMGATFLDQNGKSQPIIMGCY 434

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R VAAVIE  HD  GIIWP ++AP+ + ++ +    +   +  EKIY  L   G 
Sbjct: 435 GIGVERTVAAVIEQHHDENGIIWPLAIAPYHVVVVPVNVKKEEHLENAEKIYKELEAAGV 494

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +F  +DLLG P+++ VG K + D KVE K R    +E +S++EV++ 
Sbjct: 495 EVLLDDRNERAGFKFKDSDLLGIPMRITVG-KDIVDGKVEFKLRKEADKEIISVDEVLDR 553

Query: 438 ASHRFSNN 445
               F+ N
Sbjct: 554 VKAEFAKN 561


>gi|73662814|ref|YP_301595.1| prolyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|114152258|sp|Q49X48|SYP_STAS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72495329|dbj|BAE18650.1| prolyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 566

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P  AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+REE
Sbjct: 1   MKQSKVFIPTMKEVPAGAEALSHRLLLKAGLIKQSTSGIYSYLPLAARVLNNIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MERIDAVEILMPALQQAELWEESGRWSAYGPELMRLQDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    +    SY  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEDSLDASYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S+      
Sbjct: 181 YGRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSEQSDYAA 231



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLLMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI I       R+  +++Y +L +   DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLITINPKKDDQRELADQLYTQLKE-NYDVLYDDRKERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P++V+VG K  ++  VE+K R TG  ED+ ++ +INY +  +SN
Sbjct: 523 PVRVVVG-KNAAEGIVEVKRRDTGESEDVHVDNLINYVNTLYSN 565


>gi|289705162|ref|ZP_06501565.1| proline--tRNA ligase [Micrococcus luteus SK58]
 gi|289558106|gb|EFD51394.1| proline--tRNA ligase [Micrococcus luteus SK58]
          Length = 608

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/234 (43%), Positives = 142/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P +AE+ASH+L++R G I + + GIYSWLPLG K L  V  I+REE
Sbjct: 3   LRMSTLFLRTLRDDPAEAEVASHRLLVRAGYIRRAAPGIYSWLPLGLKVLAQVERIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  +GR+D YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MDAIGAQEVHFPALLPREPYEATGRWDEYGDGLFRLQDRRGNDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y     +
Sbjct: 123 LYSSYKDLPAYLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFTVDDAGLDAAYEAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           YLRIF RLGL+ +P+RA SG +GG  S EF+   + GE     S       + +
Sbjct: 183 YLRIFDRLGLEVVPVRATSGAMGGSRSEEFLHPTEVGEDTFVESDGGYRANVEA 236



 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 3/183 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E            + RG+E+GHIF  G KY+  +        GK   V MGSYGIG  R 
Sbjct: 428 EGDEAPDGSGPLHTRRGMEMGHIFQLGRKYAEALDLKVLDVHGKQVVVTMGSYGIGITRA 487

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA+ E  HD KG+ WP +VAP  + ++ +    +    A E + A L   G  V  DD 
Sbjct: 488 VAAIAERYHDDKGLAWPRAVAPADVHVV-VATKGEDGLAAAETLAAGLEAEGLTVLVDDR 546

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +   G +F  A+L+G P  V+VG + ++D ++E+K R TG    + ++  +        
Sbjct: 547 PKVSPGVKFKDAELIGVPTAVVVG-RGLADGELELKDRATGEARPVPVDGAVAAVLAEVR 605

Query: 444 NNR 446
           + R
Sbjct: 606 DGR 608


>gi|32490830|ref|NP_871084.1| hypothetical protein WGLp081 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340448|sp|Q8D3C0|SYT_WIGBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25166036|dbj|BAC24227.1| thrS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 636

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 156/444 (35%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+  ++E   RD      KL L    I+++S G+  W   G      +   IR++  +
Sbjct: 229 KNFIKNIKELEHRDHRKIGKKLDLF--HIYENSPGMVFWHHNGWIIFRILEKFIRKKLKK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +   DLW  SG  D+Y   M      N +     P +      IF+  I+
Sbjct: 287 FYYQEVKTPCIIDHDLWRLSGHLDNYKNYMFHTNSENKQY-CIKPMNCPAHVLIFKKKIR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LPF   +     R+E      G+MR R F   DA+ F +  +      +       
Sbjct: 346 SYKELPFRISEFGSCHRNEPSGSLHGLMRIRNFTQDDAHIFCM-HDQILSEVSSCIKMIY 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K I ++  + P     S E   + D  E Q+  S                 +
Sbjct: 405 EVYSCFGFKKILVKLSTRPENRIGSDE---IWDFAEKQLELS-----------------L 444

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + +      A         L DSL    +     +++         Y        
Sbjct: 445 KKNKILFKIDLNEGAFYGPKIEFTLLDSLNRKWQCGTIQLDLCLANKLQAYY-------I 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + K + V +    +G+M     +I     GK  +W   ++P ++ +IN+        
Sbjct: 498 NNKNEKTNPVIIHRAILGSMERFIGIITEEFSGKYPLW---ISPIQVGVINVSVD---QI 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +KI     +    +  D   E+I  +     L   P  +I G K +  + + ++++ 
Sbjct: 552 DYVKKITKFFLQKKIRIISDLRNEKISFKIREYTLRFIPYIIICGKKEMESNSISVRNKY 611

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               +  SLE+  N         +
Sbjct: 612 GKQLKYSSLEKFYNVIYEEIKQKK 635


>gi|328778641|ref|XP_395662.3| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like isoform 1
           [Apis mellifera]
          Length = 718

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 154/438 (35%), Gaps = 43/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + +       H+ S G   + P G    + +   IR E  + 
Sbjct: 304 LKEWEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKR 363

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW  SG +  Y + M    D   +     P +      IF    +S
Sbjct: 364 GFQEVVTPNIYNNKLWQTSGHWLHYAENMFSF-DVEKETFALKPMNCPGHCMIFDVRNRS 422

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+E+     G+ R R F   DA+ F  + +  K            
Sbjct: 423 WRELPLRMADFGVLHRNEMSGALTGLTRVRRFQQDDAHIF-CSVDQIKDEMIGALEFLKH 481

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +   +        P +        
Sbjct: 482 VYSVFGFTF-NLCLSTRPEKYLGDLEMWNQAEKALAESLDAFGEQWKINPEDG------- 533

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 534 -------------AFYGPKIDITIMDALKRAHQCATIQLD----FQLPIRFNL----SYV 572

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K   V +    +G++  + A++  S+ GK   WP  ++P ++ +I +        
Sbjct: 573 NEAGEKTRPVIIHRAILGSVERMIAILTESYAGK---WPFWLSPRQVMVIPV---SSQFD 626

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   ++  +L   G     D D  + +  +   A L  F   ++VG K ++   V ++ R
Sbjct: 627 DYAIQVKDKLWNDGFMAELDTDPSDTLNKKIRNAQLAQFNFILVVGEKELNAGTVNVRTR 686

Query: 422 LTGIREDMSLEEVINYAS 439
              +  ++ +++++    
Sbjct: 687 DNVVHGEILVDDLLKKFR 704


>gi|226226691|ref|YP_002760797.1| threonyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226089882|dbj|BAH38327.1| threonyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 660

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 148/450 (32%), Gaps = 48/450 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +    L L    I   + G   W P G    + +   +RE Q 
Sbjct: 233 LEQHLHNLEEAKKRDHRVLGKALGLFQ--IFPQAPGAAFWTPKGTTLYNTLEGFVRERQQ 290

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRS 120
                E+  P L +  LW +SG +  Y + M  + D    +  M   P +      +F S
Sbjct: 291 EA-FQEIKTPLLYNKKLWEQSGHWGKYKENMFLVLDNETGEHDMSLKPMNCPSHHVLFAS 349

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR +P  F    +  R+EL     G+ R R+F   D + + L  +  +     +  
Sbjct: 350 EKHSYRQMPVRFVTFDVLHRNELSGALSGLTRVRQFSQDDCHVY-LREDQIESEVKFLMD 408

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   GLK+  ++  + P     S E    A+        S          +   +
Sbjct: 409 FILSYYDTFGLKA-NLKFATRPEQRIGSDELWDRAEAALKAALESTGRSYEMKEGDGAFY 467

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I  +                                 R  ++G I      Y+ P  
Sbjct: 468 GPKIDFDVTD---------------------------SIGRAWQLGTI---QLDYNAPER 497

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G D   H  V +     G+     A++     G   +W   +AP ++ +I I  
Sbjct: 498 FELAYTGEDNAPHRPVVIHRAVSGSFERFIAILIEHFAGAFPVW---LAPEQVRVIPIAI 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    + +  R+   G     D   E +  +    ++   P   ++G +   ++ V
Sbjct: 555 D---FNAHGQALVDRMKAAGIRATLDARNETLNYRVREGEVEKVPYMCVIGRRESEENTV 611

Query: 417 EIKHRLTGIREDM-SLEEVINYASHRFSNN 445
            ++ R  G ++++ S +  +        + 
Sbjct: 612 ALRTRGAGKKQEILSADAFLARLQDEVRSR 641


>gi|169823842|ref|YP_001691453.1| prolyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|226701290|sp|B0RZJ0|SYP_FINM2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167830647|dbj|BAG07563.1| prolyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 576

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/284 (41%), Positives = 178/284 (62%), Gaps = 1/284 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPITQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVNEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E     
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGE-GVICYSDDSDFAATDEKAYVY 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
             ++  ++ +  +      +    E++ D L  +     + +++
Sbjct: 240 YQVNDENVEKLSSEKVLTPNCKTIEEVSDFLNVDAAHCLKAVDL 283



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +F + +   ++           +             E   D   ++     RGIEV
Sbjct: 350 KQMKNFVVGANEENYHIKNVNYGDDFEGEIVEDLLMVQ--EGDIDPETKSPLKFKRGIEV 407

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G+IF  G KYS  M+ATF   +GK+ +  MGSYGIG  R V+A++E +HD KG+IWP  V
Sbjct: 408 GNIFQLGQKYSKSMNATFLDENGKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMIWPLVV 467

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+ + +  +   D+      EK+Y +L   G +V  DD  E++G +F   DL+G PL++
Sbjct: 468 APYHVIITIVNTKDEEQNTLAEKLYEKLLLQGVEVLLDDRKERVGVKFNDRDLIGIPLRI 527

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VG K   D  VE   R T    +MS  E         ++N
Sbjct: 528 TVGKKAAED-IVEFSERRTLENVEMSSTEAYEKVMEIINSN 567


>gi|94676512|ref|YP_589036.1| prolyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|114152171|sp|Q1LSM8|SYP_BAUCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94219662|gb|ABF13821.1| prolyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 557

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 170/251 (67%), Gaps = 3/251 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DAE+ SH+LMLR G+I Q + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTIKEIPLDAEVISHQLMLRAGIIRQLASGLYTWLPTGLRILRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW+ESGR+  YG E+LR  DR+ +  + GPTHEEV+TD+ R+
Sbjct: 61  MNNIGAIEVSMPIVQPANLWLESGRWGQYGPELLRFTDRSTRQFLLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   +QI+ KFRDE+RPR+GVMRSREF+MKDAYSF  + +  + +Y+ M+ +
Sbjct: 121 EVKSYKQLPLNLFQIKTKFRDEVRPRYGVMRSREFIMKDAYSFHTSQQSLQATYDLMYYT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ---VFCSKDFMDFPIPSENT 237
           Y  IF+R+GL    ++A+ G IGG LSHEF+ L    E Q   +  S    +  +PSEN 
Sbjct: 181 YNTIFNRIGLDVRTVQADPGSIGGHLSHEFLALVSNYEDQMLLIDASHKATERNLPSENL 240

Query: 238 DFDDIISLNSI 248
              D   + ++
Sbjct: 241 QLVDAPGIYTL 251



 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVGHIF  G+KYS  M AT +G DG +  + MG YGIG  RVVAA I+  +D +G++ P
Sbjct: 394 IEVGHIFQLGSKYSKVMKATVQGEDGNNMIMTMGCYGIGITRVVAAAIDKYNDKQGLLLP 453

Query: 342 DSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            S+APF++++I I  H  +  +   E++Y +LS    DV  DD  E+ G  FA  +L+G 
Sbjct: 454 VSIAPFQVAIIPINLHKSLLVQTVAEQLYNQLSIRKIDVLLDDRKERPGVMFADIELIGI 513

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P  +I+G + ++  K+E K+R  G ++ M+L  ++++   + ++
Sbjct: 514 PHIIIIGDRNLAVQKIEYKNRSNGEKKLMNLSIIVDWIVAKLNS 557


>gi|115375454|ref|ZP_01462714.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115367497|gb|EAU66472.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 616

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 142/445 (31%), Gaps = 46/445 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L     H  + G   W P G      ++  +R    
Sbjct: 208 LQEYLTRIEESKKRDHRKLGKELDLF--HFHPFAPGSAFWSPKGTTLYQTLSQWMRRLTA 265

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRS 120
            TG +E+  P + +  LW  SG +  Y + M  + D    +      P +       F  
Sbjct: 266 ETGYVEIKTPLMFNKGLWEASGHWGKYKENMFLVLDNESGEHDFSLKPMNCPSHHLYFGF 325

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP   +   +  R+E     G + R R+F   DA+ +  T +       +   
Sbjct: 326 KRHSYRDLPLRLHTQDVLHRNEAAGSLGGLTRVRQFAQDDAHIY-CTEDQIGDEVRRFVK 384

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++ +GLK    +  + P            A++    V  +        P E   +
Sbjct: 385 LLDHVYNAVGLKY-SAKFSTRPEQRLGEDALWDRAESALEGVLKTLGVPYEVKPGEGAFY 443

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLP 297
              I  +                                 R  ++G I      Y  +  
Sbjct: 444 GPKIDFDV---------------------------SDSIGRKWQLGTI---QLDYLAAQR 473

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G D  +H  V +     G+     A++     G    W   +AP +  L+ +  
Sbjct: 474 FDLKYIGEDNAEHRPVVLHRAIYGSFERFIAILIEHFAGAFPAW---LAPIQAVLVTVAD 530

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   K+  +L   G  V  DD G+ + ++     +   P  +++G   V    V
Sbjct: 531 R---QLDYARKVRDQLRAKGFRVELDDRGQSLNAKIREWQIQKLPFTLVIGDNEVEAGGV 587

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
             +       + M LE+     S  
Sbjct: 588 APRRYGGEDLKSMKLEDFEALLSKE 612


>gi|269958355|ref|YP_003328142.1| threonyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848184|gb|ACZ48828.1| threonyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 636

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 151/432 (34%), Gaps = 45/432 (10%)

Query: 14  NPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +      I   + G   W   G      +   IR +  + G +E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRTIEEYIRCKLEKHGYLEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + + + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVV-ENDKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E      G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             S+ ++    P     S E    ++    +   +          E   +   +      
Sbjct: 414 FDSVTVKLSDRPENRIGSDEIWDRSEQSLMEPMNALGVQYTINKGEGAFYGPKLEFTL-- 471

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
                                    K    R  + G +      + LP  + A + G DG
Sbjct: 472 -------------------------KDSIGREWQCGTV---QLDFVLPDRLGAYYIGEDG 503

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H  V +    +G +     ++   + G   +W   +AP ++ ++ +        +   
Sbjct: 504 KKHIPVIIHRAILGTIERFIGILIEHYAGNIPVW---LAPVQLEILTVSG---EVEEYAR 557

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +     +    V  +   E I  +   A     P+  +VG     D  V ++   +G  
Sbjct: 558 GLMEMALQKNVRVELNSTEENISHKIRKAIFNKVPIVWVVGKSEAGDGCVSVRRYGSGET 617

Query: 427 EDMSLEEVINYA 438
             M+ ++ +   
Sbjct: 618 CRMAADKALKTL 629


>gi|225374732|ref|ZP_03751953.1| hypothetical protein ROSEINA2194_00352 [Roseburia inulinivorans DSM
           16841]
 gi|225213424|gb|EEG95778.1| hypothetical protein ROSEINA2194_00352 [Roseburia inulinivorans DSM
           16841]
          Length = 594

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 159/435 (36%), Gaps = 34/435 (7%)

Query: 18  AEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           A+   H+ + +   +        +G+  +LP G      +   I+ ++ + G + +  P 
Sbjct: 181 AKDRDHRKIGKEMNLFMSDDLVGRGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPC 240

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +L+  SG +D Y   M    +   ++ +  P +      I+ + + SY++LP    
Sbjct: 241 VGTVNLYKTSGHWDHYKDNMFPAMEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIG 300

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +I   FR E      G+ R R F   DA+ F +TPE  +  ++++       +    +  
Sbjct: 301 EIAHDFRFEASGTLKGIERGRHFCQNDAHLF-VTPEQIESEFSQVVDLIFDTYKDFNITD 359

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                                 D  +   +   D M     +      D + ++   E  
Sbjct: 360 YRCVLSLR--------------DPADKVKYHDDDEMWNTAENALRKVLDDLGIDYTEEIG 405

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHY 311
            A  A      +  +  ++     +S   ++    F    K++L    T+   DG K   
Sbjct: 406 EA--AFYGPKLDVNVKPAIGNEYTLSTCQLD----FCLPEKFNL----TYIDKDGTKKTP 455

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++    A I     G   +W   +AP +  +I +K  D+       ++ + 
Sbjct: 456 VVLHRAILGSLDRFMAYILEETKGNLPLW---LAPVQARIIPVKNEDEELNAYSHELLSY 512

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V  D+  E++G +   A +   P  +I+G   V D  V  +         +  
Sbjct: 513 LDENGIRVEIDERAEKLGYRVRAAQVEKVPYLIILGKNEVKDGTVSYRLHGEQATTTVPK 572

Query: 432 EEVINYASHRFSNNR 446
           EE +       +  +
Sbjct: 573 EEFLAMLKDEIATKK 587


>gi|205373425|ref|ZP_03226229.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 494

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG++ L  V  IIREE
Sbjct: 1   MKQSMTFIPTLRETPADAEIKSHQLLLRAGFMKQNTSGIYSFLPLGKRVLAKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P LQ A+LW ESGR+ +YG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MENAGVVEMFMPALQQAELWQESGRWYTYGSELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ K+RDE RPRFG++R REF+MKDAYSF  + E    +Y+++F +
Sbjct: 121 DVKSYKKLPLSLYQIQTKYRDEARPRFGLLRGREFIMKDAYSFHASKESLDETYDRIFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S 
Sbjct: 181 YSNIFERCGLNYRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSD 225



 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
              +   + + +       ++ +   ++     A      D+      D  P+ K V   
Sbjct: 341 KVIADHAVKYIVNGIAGANEEDVHYKNVNIDRDAKVERYEDLRFILEGDPSPDGKGVIKF 400

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGH+F  GT+YS  M+AT    +GK  ++ MG YGIG  R +AAV E  +D  G+
Sbjct: 401 AKGIEVGHVFKLGTRYSEAMNATVLDENGKAKHMIMGCYGIGVSRTLAAVAEQYNDENGL 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDA 364
           +WP+++AP+++ ++ +   +   +  
Sbjct: 461 LWPENLAPYQVHIVPVNMKNDETKKI 486


>gi|24215989|ref|NP_713470.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|81846319|sp|Q8F148|SYP_LEPIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24197213|gb|AAN50488.1|AE011490_3 prolyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 576

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/227 (49%), Positives = 155/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G++ + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MKASKYILPTEKENPADAVVASHRLMIRAGLVRKSSAGLYFYLPLGLKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNSTGALEFDLPILTPSDFWEQSGRWSAMGKEMFRIQDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M V+
Sbjct: 121 LLKSYKDLPVNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDSSLDDTYQAMRVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  GE  +      
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCNSC 227



 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 8/181 (4%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E            + +GIEVGHIF  G KY+          +GK   + MG YGIG  R 
Sbjct: 389 EGDLCPNCSFPLKAEKGIEVGHIFKLGDKYTKAFGIQVLDQNGKSKTLTMGCYGIGVNRT 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +A VIE  +D KGI WP S+APF++SL++I K  DQ  +   E+ Y  L   G +VFWDD
Sbjct: 449 MATVIEQCNDEKGIFWPISIAPFEVSLVSIVKGEDQYFK--IEEFYNVLMNEGIEVFWDD 506

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL----EEVINYAS 439
                G +   ++L+GFP+++ +G KF    ++ I +R    +ED  +    ++++    
Sbjct: 507 RDLGPGFKLKDSELIGFPIRITIGKKFFESGEISIYNRK-KDQEDSFVFSGFDDLVARVE 565

Query: 440 H 440
            
Sbjct: 566 S 566


>gi|329925255|ref|ZP_08280198.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328940088|gb|EGG36421.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 575

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 117/232 (50%), Positives = 151/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  + AIIR+E
Sbjct: 1   MRQSQLLMTTMRDVPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIEAIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDSAGGQELLMPAVQPAELWKESGRYDVYGAELIRLHDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD    G   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWGGLDASYRNMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE  V    D     
Sbjct: 181 YERIFRRCGLMFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCSDCRYAA 232



 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 100/229 (43%), Gaps = 4/229 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G          +            +   L  +            D  N    +  P  
Sbjct: 343 PVGLQLKIVVDHEVAAMAEGITGANQEDTHLKGVRPGLDFSLEYVGDFRNVAEGEPCPRC 402

Query: 275 K--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  RGIE+GH+F  GTKYS  M+  +  ADG++  + MG YGIG  RV+AA+ E  
Sbjct: 403 GAPLQFHRGIELGHVFKLGTKYSDAMNGKYLDADGREKPLIMGCYGIGVSRVMAAIAEQR 462

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                ++WP SVAPFK+ +I +   D+      E IY  LS  G +   DD  E+ G +F
Sbjct: 463 ISDGRLVWPMSVAPFKVHIIPVAVKDETQMQLAEHIYRELSGAGLEPLLDDRDERAGVKF 522

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             ADL G PL++IVG +  +  +VE      GI+  + +EE I  +   
Sbjct: 523 KDADLAGAPLRIIVG-RGAASGEVEWMG-EDGIKISLPVEEAIQRSREE 569


>gi|325188237|emb|CCA22777.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 756

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 151/448 (33%), Gaps = 38/448 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L   +    +A    H+ +  +      H  S G   WLP G      +   +R +
Sbjct: 341 SKAQLKEWKHFQAEATKRDHRRLGLSQDLYFFHSLSPGSAFWLPNGAHIFSKLLEFLRAQ 400

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG    Y + M      + +     P +      +F  
Sbjct: 401 YRERGYNEVITPNMFNMELWNTSGHAAHYKENMFVFEVES-QEFALKPMNCPSHCLMFDH 459

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP  +    +  R+EL     G+ R R F   DA+ F    +  K        
Sbjct: 460 RLRSYRELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CREDQIKKEIIDFLQ 518

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++    ++   +   + P       E    A+                        
Sbjct: 519 FMKFVYDTFDIRF-QLELSTRPAKAMGELEQWNRAEAQLASAL----------------- 560

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D     +   +     A      +  + D+L    + +   ++    F    +++L   
Sbjct: 561 -DEFIGKNQWRENPGDGAFYGPKIDIMITDALNRQHQCATVQLD----FQLPIRFNLKYR 615

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     +G    + +     G++    AV+   +  K   W   ++P +I ++ + A   
Sbjct: 616 S--DDEEGFKRPIIIHRAIYGSLERFIAVLVEHYAAKFPFW---LSPRQILIVTVGA--- 667

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++   + + G  V  +D G+ +  +     L  +   ++VG+K      V I+
Sbjct: 668 AFVEYGYQVKEAIFRAGFQVEIEDSGKTLNKKIREGQLAHYNFILVVGAKEQETQSVNIR 727

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRP 447
            R   +    +++E I+       N+R 
Sbjct: 728 TRDNKVHGTKTIQEAIDMFQS-LENSRA 754


>gi|119963667|ref|YP_947320.1| prolyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|152074745|sp|A1R508|SYP_ARTAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119950526|gb|ABM09437.1| prolyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 603

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/245 (41%), Positives = 144/245 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S+ FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG   L  V  IIR+E
Sbjct: 3   LRLSQLFLRTLREDPVDAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEDIIRQE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MSAIGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +
Sbjct: 123 LYSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDIDDAGLDASYAAHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF RLGL+ IP+ A +G +GG  S EF+   + GE     S       + +  T   
Sbjct: 183 YLKIFERLGLEVIPVAATAGAMGGSKSEEFLFPTEIGEDTFVRSAGGYYANVEAVTTVVP 242

Query: 241 DIISL 245
           D I  
Sbjct: 243 DEIDF 247



 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 3/171 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             +ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E+++D 
Sbjct: 435 LETARGIEMGHIFQLGRKYAEALDLKVLDQNGKQQVVTMGSYGVGVTRAVAALAEANNDD 494

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           +G++WP SVAP  + ++ +   D++  +A EK+   L   G DV +DD  +   G +F  
Sbjct: 495 RGLVWPRSVAPADVHVVAVGRGDEIF-EAAEKLSLELEAAGLDVIFDDRPKVSPGVKFGD 553

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           A+L+G P  + VG + + D  VEIK R +G  E++S+++ ++Y  +     
Sbjct: 554 AELVGVPTILAVG-RGLVDGVVEIKDRRSGEAENISVDKAVDYVVNAVRTR 603


>gi|315282166|ref|ZP_07870634.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313614198|gb|EFR87874.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 308

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 149/235 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S           
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSDASDYAANTEM 235


>gi|9105289|gb|AAF83255.1|AE003895_6 prolyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 582

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 151/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 19  MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 79  MNRAGAVEMLLPTIQPRELWEESERWEKFGNQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 139 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 199 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGEDVLAFS 242



 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD
Sbjct: 416 KICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHD 475

Query: 335 GKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GIIWP S+AP+++++  I    D V   A E + A L     D   DD G + G  FA
Sbjct: 476 VAGIIWPASIAPWQVAVCVINPKKDPVITAAAEVLLAELQSADVDTVLDDRGLRPGVMFA 535

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             +L+G P +++V  + ++    E + R T + E++    ++     
Sbjct: 536 DMELIGIPHRIVVSERGLAAGTYEYRARHTAMVENLDKTTLLMRIKA 582


>gi|113954220|ref|YP_731070.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031674|sp|Q0I902|SYT_SYNS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113881571|gb|ABI46529.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 617

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 149/441 (33%), Gaps = 38/441 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRLGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDERQYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L PE       ++     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILRILNLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P           LA  G  +    K +                      
Sbjct: 381 FSNYEINLSTKPDKAIGDDAVWELATKGLIEALKRKGWAYKIDEGGG------------- 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
                  A      + K+ D++    + S   ++    F    ++       +  ADG K
Sbjct: 428 -------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERF----ELDYIAADGSK 472

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++     ++  ++ G    W   +AP +I L+ +           E+ 
Sbjct: 473 QRPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT---DEVLGYAEEF 526

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G     D  G+++G    + + +  P+  ++G+K        ++ R  G    
Sbjct: 527 QNQLKAAGIRASIDRSGDRLGKLIRIGEKMKIPVLAVIGAKEAEQGAASLRSRRDGDLGV 586

Query: 429 MSLEEVINYASHRFSNNRPVL 449
           ++ E +I  A     + +  L
Sbjct: 587 ITKERLIATAQSANQDRKASL 607


>gi|78060370|ref|YP_366945.1| threonyl-tRNA synthetase, class IIA [Burkholderia sp. 383]
 gi|77964920|gb|ABB06301.1| Threonyl-tRNA synthetase, class IIa [Burkholderia sp. 383]
          Length = 477

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/449 (21%), Positives = 159/449 (35%), Gaps = 60/449 (13%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  I  +KL L      Q   G+  W P G      +   +R    R G  E+  P L +
Sbjct: 71  DHRILGNKLGLFHQ--QQEGPGMVFWHPRGWALYRVLEDYVRMRMRRAGFREIRTPQLLA 128

Query: 77  ADLWVESGRYDSYGKEMLRLADR----------NDK--AMIYGPTHEEVMTDIFRSHIKS 124
             LW  SG +D +G +M  L DR          +D   A+   P        +F   ++S
Sbjct: 129 RSLWERSGHWDKFGSQMYALPDRSPIEPSADVDHDDALALCLKPMSCPCHVQVFNQGLRS 188

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + +     RDE      G+ R+R F+  DA+ F  T    ++   +       
Sbjct: 189 YRELPIRYSEFGACHRDEPSGSLEGLKRTRAFVQDDAHVF-CTKSQIENEVARFCNLLRA 247

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG  S+ +   + P+              GE  V                   D  
Sbjct: 248 VYADLGFSSVTVALATRPMQR-----------AGEEAV------------------WDQA 278

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG--IEVGHIFYFGTKYSLP--MS 299
             +       A             +    E K    RG   + G I      + LP  ++
Sbjct: 279 EASLAAAARAAGLEFELSEGEGAFYGPKLEFKLADRRGREWQCGTI---QLDFVLPGRLN 335

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F  A+  ++  V +    +G+M    A++   ++G   +W   +AP +I + +I    
Sbjct: 336 AHFINAENVQETPVMLHHAVLGSMERFIAILLEHYEGWLPVW---LAPEQIVVASI---S 389

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L   G  V  D   E++  +   A  L  P  + VG++   +  V I
Sbjct: 390 DAHAPYAMRVVQMLDDAGLRVVADCRAERLERKIIDARKLQIPFLIAVGARDERNGTVSI 449

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRP 447
           ++R  G +  + L+E I   S       P
Sbjct: 450 RNR-NGDQVTLPLDEAITVLSCEAKAPSP 477


>gi|269956006|ref|YP_003325795.1| prolyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304687|gb|ACZ30237.1| prolyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 607

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 144/247 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V AI+REE
Sbjct: 11  LRLSSLFVRTLREDPADAEVASHRLLIRAGYIRRAAPGIYTWLPLGLRVLAKVEAIVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L   + +  +GR++ YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 71  MAAIGGQEVHFPALLPREPYEATGRWEEYGPNLFRLQDRKRADYLLAPTHEEMFTLLVKD 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T +QIQ K+RDE RPR G++R REF+MKD+YSFD T  G   +Y +   +
Sbjct: 131 LYSSYKDLPLTLFQIQTKYRDEARPRAGLIRGREFVMKDSYSFDHTDAGLDEAYQRHRDA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  + + A SG +GG  S EF+  +  GE     S       + +  T   
Sbjct: 191 YERIFTRLGLDYVIVSAMSGAMGGSRSEEFLSPSVIGEDTFVRSPGGYAANVEAVITPVP 250

Query: 241 DIISLNS 247
           + I  + 
Sbjct: 251 EAIGYDD 257



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 19/153 (12%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +       +GK   V MGSYGIG  R +AA+ E++HD +G+ 
Sbjct: 442 RGIEMGHIFQLGRKYAEALGLKVLDENGKAVTVTMGSYGIGVTRALAALAEANHDERGLA 501

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD-- 396
           WP  VAP  + ++      +V  DA  ++   L   G +V +DD  +   G +FA A+  
Sbjct: 502 WPAHVAPAHVHVVATGRGAEVF-DAAAELAEGLVANGVEVVYDDRPKVSPGVKFADAELL 560

Query: 397 ------LLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                 ++          + ++D  VE++ R  
Sbjct: 561 GVPLLVVV---------GRGLADGVVEVRPRAG 584


>gi|147669325|ref|YP_001214143.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Dehalococcoides
           sp. BAV1]
 gi|189083604|sp|A5FRB3|SYT_DEHSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146270273|gb|ABQ17265.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Dehalococcoides
           sp. BAV1]
          Length = 582

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 154/442 (34%), Gaps = 40/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L + +  +   G+ +WLP G      +    ++E  + G
Sbjct: 174 YLNMLEEAAKRDHRKLGKELELFS-LHQEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKRG 232

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +SY
Sbjct: 233 YDLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSY 292

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+ R R F   DA+ F L  +  +    K+      +
Sbjct: 293 KELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCL-YDQLEKEVVKVLDLAKFM 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P       +    A     +   +        P E   +   I 
Sbjct: 352 IDTFGFTKYKVMLSTRPEKYVGELDKWEYATDILAKALEANQIPYQVDPGEGVFYGPKI- 410

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                              + K  D+L    +     ++    F    ++      +  G
Sbjct: 411 -------------------DIKFEDALGRAWQGPTIQVD----FQLPERF----DVSVVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKD  V  +    +G+M    + +   + G    W   ++P +  +I I        +
Sbjct: 444 EDGKDQPVAMVHRTVLGSMERFMSCLTEQYGGAFPAW---LSPKQAMVIPIA---DRHTE 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L +    V  D   E +  +   A L   P  ++VG K +    V ++ R T
Sbjct: 498 FAEKLACELREEEVRVEVDSRSETMNQKIRQAQLAKIPYMLVVGDKEIETQSVAVRTR-T 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G ++ M   E  +    +    
Sbjct: 557 GSQQVMPFAEFKSMLLAKIKTK 578


>gi|314923910|gb|EFS87741.1| prolyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|314966030|gb|EFT10129.1| prolyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
 gi|314981915|gb|EFT26008.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315090730|gb|EFT62706.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
 gi|315094978|gb|EFT66954.1| prolyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|315104203|gb|EFT76179.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327328087|gb|EGE69856.1| proline--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 581

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 147/244 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  NIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R 
Sbjct: 404 EGDLAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRA 463

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD 
Sbjct: 464 VAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDR 522

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 523 KASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|295698321|ref|YP_003602976.1| threonyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157332|gb|ADD79777.1| threonyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 414

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 157/445 (35%), Gaps = 43/445 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+     +E  +D      +L L      Q+S G   W P G      +   IR + 
Sbjct: 4   RNRKFSNHTEKE--QDHRSIGRQLELF--YFDQNSPGSVFWNPNGLIIFQELKRYIRLKL 59

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G   +Y K M +++  + +     P +      IF+  
Sbjct: 60  KEYQYQEVKTPEILHKSLWKKTGHLQNYEKYMFKVSSES-RKYCLKPMNCPGHIKIFQQK 118

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           I+SYR+LP    +     R+EL     G+MR REF   DA+ F  T E       K    
Sbjct: 119 IRSYRDLPLRIAEFGNCHRNELSGSLHGLMRVREFTQDDAHIF-CTKEQVFEEIKKCIGM 177

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K I +R  + P       ++   A++   +    +  +     +      
Sbjct: 178 VQEVYKTFGFKKISIRLATRPKQRIGEEKYWDYAESILEKALEKEFDLLPENGAFYGPKI 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +    + +  +W                       +     ++       G  Y      
Sbjct: 238 EFTLHDRLEREW-----------------------QCGTIQLDFLLPIQLGVFY------ 268

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                + K H + +    +G++     ++   + G    W   ++P ++ +I++      
Sbjct: 269 -IDQKNKKQHPMIIHRAILGSIERFIGILIEHYSGYLPTW---LSPIQVVVISVSKK--- 321

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +KI  R+   G  V+ D   E+I  +     +   P  V+ G K      V I+ 
Sbjct: 322 YINFSKKIVQRIKYAGIRVYHDLKNEKINLKIRKHSINKIPYIVLCGEKEEKTGSVSIRR 381

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           +L  + + +S+E  I   S   +N 
Sbjct: 382 KLEKVIKTISIENFIKMVSSEINNY 406


>gi|313813363|gb|EFS51077.1| prolyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
          Length = 581

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 147/244 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|327334245|gb|EGE75959.1| proline--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 581

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/239 (42%), Positives = 144/239 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPD 239



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|308176793|ref|YP_003916199.1| proline--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744256|emb|CBT75228.1| proline--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 595

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/234 (43%), Positives = 145/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ S  FL  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG K L  V AI+REE
Sbjct: 3   LKLSTTFLRTLREDPVDAEVASHKLLVRAGYIRRAAPGIYTWLPLGLKVLARVEAIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + + ++GR+  YG  + RL DR D   +  PTHEE+ T + + 
Sbjct: 63  MNAIGAQEVHFPALLPREPYEQTGRWAEYGDGLFRLKDRKDADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +
Sbjct: 123 LYNSYKDLPVYLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFNIDDEGLDEAYMAHRGA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           YL+IF RLGL+ +P+ A++G +GG  S EF+     GE     S       + +
Sbjct: 183 YLKIFERLGLEVVPVFAQAGAMGGSKSEEFLHPTAIGEDTFVRSPGGYAANVEA 236



 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 3/166 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             + RGIE+GHIF  G KY+  ++      +GK   V MGSYGIG  R VAA+ E+ HD 
Sbjct: 432 LRTERGIEMGHIFQLGRKYAEALNLKVLDQNGKQTVVTMGSYGIGVTRAVAALAEAYHDE 491

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
            G+ WP  VAP  I ++ +        +A EK+  +    G +V  DD  +   G +F+ 
Sbjct: 492 NGLAWPKQVAPADIHIV-VTGKGPELLEAAEKLAGQFEAAGKEVILDDRPKVSAGVKFSD 550

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           A+L+G P  V+VG + ++D  VE+K R TG R D+++E V+   + 
Sbjct: 551 AELIGIPTIVVVG-RGLADGVVEVKDRATGERRDVNVENVVAELTA 595


>gi|313763586|gb|EFS34950.1| prolyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313807954|gb|EFS46435.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313822153|gb|EFS59867.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313823613|gb|EFS61327.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825936|gb|EFS63650.1| prolyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|314914740|gb|EFS78571.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314919298|gb|EFS83129.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920792|gb|EFS84623.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314924644|gb|EFS88475.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314930471|gb|EFS94302.1| prolyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314954371|gb|EFS98777.1| prolyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314957443|gb|EFT01546.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314962089|gb|EFT06190.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314968504|gb|EFT12602.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
 gi|314978817|gb|EFT22911.1| prolyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314986526|gb|EFT30618.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314990885|gb|EFT34976.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315081252|gb|EFT53228.1| prolyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
 gi|315083450|gb|EFT55426.1| prolyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
 gi|315087136|gb|EFT59112.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315089308|gb|EFT61284.1| prolyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315099214|gb|EFT71190.1| prolyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
 gi|315100435|gb|EFT72411.1| prolyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315106771|gb|EFT78747.1| prolyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315109012|gb|EFT80988.1| prolyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327329728|gb|EGE71484.1| proline--tRNA ligase [Propionibacterium acnes HL096PA3]
 gi|327454965|gb|EGF01620.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327457749|gb|EGF04404.1| prolyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328752168|gb|EGF65784.1| prolyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328755200|gb|EGF68816.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328758320|gb|EGF71936.1| prolyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 581

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 147/244 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|300813650|ref|ZP_07093972.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512192|gb|EFK39370.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 570

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEI SHK +LR G I + + GIY++L LG + +  +  I+REE
Sbjct: 1   MRLSKLYMPTLREDPQDAEIVSHKFLLRGGFIRKSASGIYTYLTLGYRVVRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W +SGR++ YG EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MDRCGSQEILMSAIQPREIWEDSGRWEKYGPEMFKLKDRHDRDFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD   EG + SY  M+ +
Sbjct: 121 EVNSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDEDLEGLEKSYMNMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y ++F RL L    +  ++G +GG  SHEFI LA++GE  +  S++
Sbjct: 181 YEKVFDRLSLNYKIVEGDNGAMGGSGSHEFIALAESGEGVIVFSEN 226



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 1/174 (0%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            ++   ARGIEVG+IF  GTKYS  ++AT+   +GK  Y  MGSYGIG  R VAA++E +
Sbjct: 397 CDEYKFARGIEVGNIFQLGTKYSKSLNATYLDRNGKAQYFYMGSYGIGITRTVAAIVEQN 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           +D  GIIWP + AP++  +  I  +++  ++  EKIY  L + G +V  DD   + G +F
Sbjct: 457 YDENGIIWPVATAPYECIVTVINPNNEEQKELGEKIYKSLQEKGIEVLIDDRDLRAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              DL+G P+++ VG K  SD  VE   R      ++S +  I  A     + R
Sbjct: 517 KDRDLIGIPVRITVGKK-ASDDVVEYSLRKEMKNSEISSQSAIESAIKEVYDGR 569


>gi|327446413|gb|EGE93067.1| prolyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
          Length = 581

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 148/244 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A +GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAASGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|298489744|ref|YP_003719921.1| prolyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298231662|gb|ADI62798.1| prolyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 597

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 150/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S      L+++P DAEI SH+L+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSNKLFVTLRDDPGDAEIPSHQLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW +SGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNATGAEECLLPQLQPAELWKDSGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MRSREF+MKD YSF    E  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHTDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y  +  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D     
Sbjct: 181 YQAYSNMLRRAGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTEDGKYAA 234



 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIEVGHIF  GTKYS  M AT+    G+   + MG YG+G  R+  + +
Sbjct: 425 HDPSQTLKTARGIEVGHIFQLGTKYSEAMGATYINEQGEKKPLIMGCYGVGVSRLAQSAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+   +      D    +  EK+Y  L+K G +   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYHSIITIPNIKDAQQIEVAEKLYTELNKAGVETLLDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F  ADL+G P +++ G + +++ KVE+  R     + +++EEV+N       
Sbjct: 545 VKFKDADLIGIPFRIVTG-RAIANGKVEVVKRANRESQQIAIEEVVNTLQQWLK 597


>gi|57234472|ref|YP_181487.1| threonyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|123759710|sp|Q3Z8G2|SYT_DEHE1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57224920|gb|AAW39977.1| threonyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 582

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 156/442 (35%), Gaps = 40/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L + +  +   G+ +WLP G      +    ++E  + G
Sbjct: 174 YLNMLEESAKRDHRKLGKELELFS-LHQEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKRG 232

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +SY
Sbjct: 233 YSLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSY 292

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+ R R F   DA+ F L  E  +    K+      +
Sbjct: 293 KELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCL-YEQLEKEVVKVLDLAKFM 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P       +    A     +   S        P E   +   I 
Sbjct: 352 IDTFGFTRYKVMLSTRPEKYVGELDKWEYATDILAKALESNQIAYQVDPGEGVFYGPKI- 410

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                              + K  D+L    +     ++    F    ++      +  G
Sbjct: 411 -------------------DIKFEDALGRAWQGPTIQVD----FQLPERF----DVSVVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKD  V  +    +G+M    + +   + G   +W   ++P ++ LI I        +
Sbjct: 444 EDGKDQPVAMVHRTVLGSMERFMSCLTEQYGGAFPVW---LSPKQVMLIPIA---DRHSE 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L +    V  D+  E +  +   A L   P  ++VG K +    V I+ R +
Sbjct: 498 FAEKLACELREEEVRVEVDNRSETMNQKIRQAQLAKIPYMLVVGDKEIETQSVSIRTR-S 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G +  M   E  +    +    
Sbjct: 557 GSQCVMPFAEFKSMLIDKIKTK 578


>gi|318041155|ref|ZP_07973111.1| prolyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 609

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 147/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G I +   GIY++LPL  + L  ++AI+REE
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRAGYIRRVGSGIYAYLPLLWRVLQKISAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNAAGALETLLPQLQPAELWQRSGRWAGYTAGEGIMFHLEDRQGRELGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AGDLLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEACLKQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D        
Sbjct: 181 DQAYRRIFSRCGLRAVAVEADSGAIGGSASQEFMVTADAGEDLILASGDGRYAANQE 237



 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 95/170 (55%), Gaps = 1/170 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  + ATF    G++  + MG YGIG  R+  A +E  HD  GI 
Sbjct: 438 RGIEVGHIFQLGRKYSAALEATFTNEAGQEEPLWMGCYGIGVSRLAQAAVEQHHDANGIC 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF++ ++     D   R+  E++YA     G DV  DD  E+ G +F  ADLLG
Sbjct: 498 WPTAIAPFEVIVVIANVADAAQRELGEQLYAEFQVAGMDVLLDDRTERAGVKFKDADLLG 557

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            P +V+VG +  +D KVE+  R  G R D++  +V+     +    R  L
Sbjct: 558 IPWRVVVG-RGAADGKVELVQRAGGERSDLAAADVLAQLQGQLERERGGL 606


>gi|282883093|ref|ZP_06291693.1| proline--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297070|gb|EFA89566.1| proline--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 570

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEI SHK +LR G I + + GIY++L LG + +  +  I+REE
Sbjct: 1   MRLSKLYMPTLREDPQDAEIVSHKFLLRGGFIRKSASGIYTYLTLGYRVVRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W +SGR++ YG EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MDRCGSQEILMSAIQPREIWEDSGRWEKYGPEMFKLKDRHDRDFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD   EG + SY  M+ +
Sbjct: 121 EVNSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDEDLEGLEKSYMNMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y ++F RL L    +  ++G +GG  SHEFI LA++GE  +  S++
Sbjct: 181 YEKVFDRLSLNYKIVEGDNGAMGGSGSHEFIALAESGEGVIVFSEN 226



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 1/174 (0%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            ++   ARGIEVG+IF  GTKYS  ++AT+   +GK  Y  MGSYGIG  R VAA++E +
Sbjct: 397 CDEYKFARGIEVGNIFQLGTKYSKSLNATYLDRNGKAQYFYMGSYGIGITRTVAAIVEQN 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           +D  GIIWP + AP++  +  I  +++  ++  EKIY  L + G +V  DD   + G +F
Sbjct: 457 YDENGIIWPVATAPYECIVTVINPNNEEQKELGEKIYKSLQEKGIEVLIDDRDLRAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              DL+G P+++ VG K  SD  VE   R      ++S +  I  A     + R
Sbjct: 517 KDRDLIGIPVRITVGKK-ASDDVVEYSLRKEMKNSEISSQSAIESAIKEVYDGR 569


>gi|269302597|gb|ACZ32697.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 635

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 152/438 (34%), Gaps = 40/438 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD  +   KL L +    + S G+  + P G    D +    ++     G  E
Sbjct: 229 QIEEAKKRDHRVLGAKLDLFSQ--QESSPGMPFFHPRGMIVWDALIRYWKQLHTAAGYKE 286

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P L +  LW  SG +D+Y   M  L   +D+     P +       +++ + SY+  
Sbjct: 287 ILTPQLMNRQLWEVSGHWDNYKANMYTLQ-IDDEDYAIKPMNCPGCMLYYKTRLHSYKEF 345

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +I    R E      G+MR R F   DA+ F LTPE  +     +      ++  
Sbjct: 346 PLRVAEIGHVHRQEASGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILQLVSTLYGT 404

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL+   +   + P                E          +    + N       +   
Sbjct: 405 FGLEY-HLELSTRP----------------EKDTIGDDSLWELATDALNRALVQSGTPFI 447

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    D+H           K    R  + G I              +  A G
Sbjct: 448 VRPGEGAFYGPKIDIH----------VKDAIQRTWQCGTI-QLDMFLPERFELEYTTAQG 496

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   V +     G++     ++  +  G+  +W   ++P ++ +I +           +
Sbjct: 497 TKSVPVMLHRALFGSIERFLGILIENFKGRFPLW---LSPEQVRIITVA---DRHIPGAK 550

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++     ++G  V  DD  E +  +   A  +     + +G   ++++ + ++ R   + 
Sbjct: 551 ELEEAWKRLGLVVTLDDSSESVSKKIRNAQNMQVNYMITLGDHEINENVLAVRTRDNRVI 610

Query: 427 EDMSLEEVINYASHRFSN 444
            D+S+E  +N      ++
Sbjct: 611 NDVSVERFLNTILEEKNS 628


>gi|168064726|ref|XP_001784310.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664141|gb|EDQ50872.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 685

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 151/447 (33%), Gaps = 39/447 (8%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  ++E   RD      +        H+ S G   +LP G +  + + A IR+E
Sbjct: 276 KLLKEYLHNVEEAKKRDHRKLGQQ--QELFFFHELSPGSCFFLPHGARIYNKLQAFIRDE 333

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +  LW  SG   +Y   M        +     P +      IF  
Sbjct: 334 YRKRGYEEVVSPNMFNMQLWETSGHAANYKDNMFTFEVEK-QEFGLKPMNCPGHCLIFDH 392

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP       +  R+EL     G+ R R F   DA+ F +              
Sbjct: 393 RVRSYRELPLRLADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCM-ESQLLTEVKGALD 451

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G     +   + P       E    A+        +         ++    
Sbjct: 452 FLEFAYGVFGFTF-ELELSTRPEKYLGEIETWNRAEKALEAALNAFGKPWQINEADG--- 507

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  +FD+L    + +   ++    F    +++L  S
Sbjct: 508 -----------------AFYGPKIDITVFDALKRKFQCATIQLD----FQLPIRFNLSYS 546

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +    ++  V +    +G++  + A++   + GK   WP  ++P +  +  +    +
Sbjct: 547 T--EDEAKREKPVIIHRAILGSVERMFAILLEHYAGK---WPFWLSPRQCIVCPV---SE 598

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++   ++  G     D    ++  +   A L  F   ++VG +  S  +V I+
Sbjct: 599 KFTHYAVEVRDAINAAGYFCEADVTDRKLQKKIREAQLAQFNYILVVGEEETSKKQVNIR 658

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R   +    S+ E++       +  R
Sbjct: 659 TRDNVVHGTKSVTELLADFQKETAEYR 685


>gi|313773524|gb|EFS39490.1| prolyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313831317|gb|EFS69031.1| prolyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313834927|gb|EFS72641.1| prolyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314974192|gb|EFT18288.1| prolyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976699|gb|EFT20794.1| prolyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314984337|gb|EFT28429.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|315095331|gb|EFT67307.1| prolyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|327328406|gb|EGE70168.1| proline--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327444193|gb|EGE90847.1| prolyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327444928|gb|EGE91582.1| prolyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|328760064|gb|EGF73644.1| proline--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 581

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 147/244 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVGRR-LKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|206896471|ref|YP_002247167.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206739088|gb|ACI18166.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 632

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 163/453 (35%), Gaps = 51/453 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L + +      G+  W P G      +    R+   
Sbjct: 218 LEEFLHNLEEAERRDHRKLGKQLDLFS-INEDIGPGLILWHPNGAVIRKEIEDFWRQSHI 276

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +    LW  SG    Y + M    +  +++ +  P +      I+++  
Sbjct: 277 DNGYQLVYTPHVARTKLWEISGHLSFYKENMFPSMELENQSYLVKPMNCPFHVQIYKTKT 336

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP  F ++   +R E      G++R R F   DA+ F       +    K+    
Sbjct: 337 RSYKELPIRFAELGTVYRFERSGVLHGLLRVRGFTQDDAHIFCARE-QVEEEVEKVLDMA 395

Query: 182 LRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           L I+   G + + +             +G D   E   LA++  +    ++D        
Sbjct: 396 LGIYRLFGFEDLRIELSVRDPKNKDKYVGDDDVWE---LAESALSGALKARDLDFTVAEG 452

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           E   +   I                    + K+ D+L    +     ++    F    ++
Sbjct: 453 EAKFYGPAI--------------------DIKVKDALGRYWQGPTIQVD----FNLPRRF 488

Query: 295 SLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           ++     + G DG +H  V +    +G++    A++   + G   +W   VAP ++ ++ 
Sbjct: 489 NM----KYTGQDGLEHEPVMIHRALLGSLERFFALLIEQYSGWFPLW---VAPEQVRILP 541

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           I    +      + +   L +    V  D D G ++G +         P  ++VGSK V 
Sbjct: 542 IT---EDQMQYAQSVAEGLKE--FRVKLDTDTGSKLGYRIRRGQTEKVPYMLVVGSKEVE 596

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V ++H + G    MSL+E  +       N 
Sbjct: 597 SGVVSVRHGVKGDLGQMSLDEFKSMIKEEIENK 629


>gi|21672408|ref|NP_660475.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|22654285|sp|P46244|SYT_BUCAP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21623017|gb|AAM67686.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 642

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 143/434 (32%), Gaps = 46/434 (10%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             RD        +L    + + S G+  W   G    + +   +RE+       E+  P 
Sbjct: 240 KKRDHRKIGK--LLNLYHMQKESPGMIFWHNNGWIIFNELEIFVREKLKEYKYKEVKTPL 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    +W +SG +D+Y   +   +  N +     P +      IF   +KSYR+LP    
Sbjct: 298 LIDKSIWQKSGHWDNYQDAIFTTSSEN-REYCIKPMNCPGHVQIFNCGLKSYRDLPIRMA 356

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  ++  N        ++     K 
Sbjct: 357 EFGSCHRNESSGSLHGLMRIRNFTQDDAHIF-CTQEQLRYEINNCIKMIYDLYSTFNFKK 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + P            A+   + V    +        E   +   I         
Sbjct: 416 ILVKFSTRPKKRIGDESVWDQAEKDLSDVLIENNLKFEHQEGEGAFYGPKIEF------- 468

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGA-DGK 308
                                 +    R  + G I   FY   +    + + +    + +
Sbjct: 469 --------------------VLQDSLDRNWQCGTIQLDFYLPIR----LRSFYIDEHNHQ 504

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +    +G++     ++     GK   W   ++P ++ +++I        +  +KI
Sbjct: 505 KIPIIIHRAILGSIERFIGILIEEFSGKLPTW---LSPIQVVILSIT---DSHINYVKKI 558

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
               S +   V  D   E+IG +     L   P  +I G K +   K+ ++ R       
Sbjct: 559 VQHFSDINIRVESDLRNEKIGFKIREHTLRQIPYILICGEKEIKSKKISVRTRNGYNLGI 618

Query: 429 MSLEEVINYASHRF 442
           + ++  I       
Sbjct: 619 IDIDCFIKKLQKEI 632


>gi|313811577|gb|EFS49291.1| prolyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
          Length = 581

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 147/244 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVGRR-LKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|325848534|ref|ZP_08170194.1| threonine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480762|gb|EGC83819.1| threonine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 641

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 150/446 (33%), Gaps = 48/446 (10%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   ++ + +E  R D      ++ L +   H+ + G   +   G      +     + 
Sbjct: 228 KQLDEYIKLQEEAKRRDHRRIGKEMNLFS--FHEEAPGFPFFKENGMILRHELLNWWTDV 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG +D Y + M      + +     P +      ++  
Sbjct: 286 LAENGYGEIQTPLIMNEELWHRSGHWDHYKENMY-FTKIDGENYAVKPMNCPGSVLVYGE 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP    +     R EL     G+ R R F   DA+ + L P   K    KM  
Sbjct: 345 EPHSYRDLPIRLAEYGQVHRHELSGALHGLFRVRTFTQDDAHVYCL-PSQVKDEVFKMID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G K   +   + P       E    A+         +              
Sbjct: 404 LADLLYSTFGFKY-KIELSTRPDDFMGKIEEWDFAEKALEDALKERGID----------- 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSL 296
                   I  +  A Y    D H E            + R  + G I   F     +  
Sbjct: 452 ------YQINPKDGAFYGPKIDFHLEDA----------AKRTWQCGTIQLDFQLPQNF-- 493

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+   +G K   V +    +G++      +     G+  +W   + P ++++I + 
Sbjct: 494 --DLTYIDENGEKKRPVMLHRALLGSVERFIGSVTEQFAGRFPLW---INPKQVAIIPV- 547

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D  + +  ++ K G  V  D   E +G +   A L+     ++VG       K
Sbjct: 548 --SDKFADFADDLAKKIKKAGYRVDVDHRSEGVGYKIRQAQLMRTNYMLVVGENEEKSGK 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           + +++R     +D+S EE I   +  
Sbjct: 606 LTVRNRDGEETKDVSFEEFIEKLNQE 631


>gi|58263294|ref|XP_569057.1| threonine-tRNA ligase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108684|ref|XP_776995.1| hypothetical protein CNBB5220 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259678|gb|EAL22348.1| hypothetical protein CNBB5220 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223707|gb|AAW41750.1| threonine-tRNA ligase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 772

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 165/457 (36%), Gaps = 47/457 (10%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K +L   +   RD             + +  S G   +LP+G +  + + + I++E
Sbjct: 350 MKEYKKYL--EEAAKRDHRKIGK--DQELFIFNDLSPGSAFFLPMGMRIYNTLMSFIKDE 405

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +A+LW  SG + +Y ++M +L   +++ +   P +      IF +
Sbjct: 406 YFKRGFSEVGSPNIFNANLWKTSGHWQNYAEDMFQLKA-DEEQLALKPMNCPGHCLIFDA 464

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP  F +  +  R+E      G+ R R F+  DA+ F  TP+  +      F 
Sbjct: 465 RERSYKELPLRFAEFGVLHRNEASGALSGLTRVRRFVQDDAHIF-CTPDQVEAELYSAFE 523

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G       +   P       E    A+    +V   K   ++ +  E+  F
Sbjct: 524 FLDAVYKPFGFTYKVGLSTRNPKKWMGDLELWNKAEGTLREVLEQKVPGNWHVNEEDAAF 583

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSL 296
                   + +                             R  + G I   F    +++L
Sbjct: 584 YGPKLDFQLTD--------------------------ALKRSWQCGTIQLDFNLPERFNL 617

Query: 297 PMSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              +  +  DG      V +    +G++    A+I  S  GK   WP  ++P ++ +I +
Sbjct: 618 KYHSPEQNPDGTQFARPVMIHRAILGSLERFIAIITESTGGK---WPLWLSPRQVVVIPV 674

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +  +K+     + G     D     +  +   A    +   ++VG   +   
Sbjct: 675 AK---PFTEYAQKVAKTFQEAGLYAEVDLTDNTLNKKIRNAQTAQWNFIMVVGQDELDAQ 731

Query: 415 KVEIKHRLT---GIREDMSLEEVINYASHRFSNNRPV 448
            V I++R     G  E ++L   +        +   V
Sbjct: 732 AVNIRNRDDEVQGREETVALSRAVEQIVKLKESKAAV 768


>gi|86606966|ref|YP_475729.1| prolyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|114152267|sp|Q2JSB6|SYP_SYNJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86555508|gb|ABD00466.1| prolyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 609

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 109/227 (48%), Positives = 145/227 (63%), Gaps = 5/227 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P +AE+ SHKL+LR G I + S GIY++LPL  + L  ++ I+REE 
Sbjct: 6   RLSQMLFVTLREDPAEAELISHKLLLRGGFIRRLSPGIYTYLPLLWRVLQKISDIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIF 118
           N  GA E  +P LQ A++W ESGR+D Y +    M  L DR  +    GPTHEEV+T + 
Sbjct: 66  NAIGAQECLLPQLQPAEIWRESGRWDVYTQAEGIMFALKDRQGREQALGPTHEEVITLLA 125

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  I+SYR LP   YQIQ KFRDE+RPRFG++R REFLMKDAYSF    E  + +Y  M+
Sbjct: 126 RDLIRSYRQLPQILYQIQTKFRDEIRPRFGLLRGREFLMKDAYSFHANEESLRQTYQDMY 185

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGG--DLSHEFIVLADTGETQVFC 223
            +Y RI  R GL+   + A++G IGG    S EF+VLA  GE ++  
Sbjct: 186 RAYGRILRRCGLEFCVVEADAGAIGGPSAASQEFMVLASAGEDEILY 232



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 1/173 (0%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+    +ARGIE+GHIF  G K+SLPM A+F    G +  + MG YGIG  R+  A +E
Sbjct: 431 NPDQILETARGIEIGHIFQLGLKFSLPMRASFTDEQGSEQPLWMGCYGIGVSRLAQAAVE 490

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            SHD  GIIWP ++AP+ + ++     D       EK+   L+  G +  WDD  E+ G 
Sbjct: 491 QSHDANGIIWPVAIAPYHVVVVVPNVSDPEQTKVAEKLVQELAAAGIETLWDDRDERAGV 550

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F  ADL+G P ++  G + +   KVE+  R TG   ++ +EEV+     R +
Sbjct: 551 KFKDADLIGIPYRLTTG-RSLKQGKVELAERATGQAVEIPIEEVVATLKERIA 602


>gi|296269038|ref|YP_003651670.1| prolyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296091825|gb|ADG87777.1| prolyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 580

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 141/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG+  L+N+  ++REE
Sbjct: 3   LRMSTLFLRTLREDPADAELPSHKLLVRAGYIRRVAPGVYSWLPLGKIVLENIARVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ + 
Sbjct: 63  MDRMGAQEVLFPALLPREYYEATGRWTEYGDTLFRLKDRKGADYLLGPTHEEMFTDMVKG 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFDL  +G K SY     +
Sbjct: 123 ELSSYKDFPVTLYQIQTKYRDEARPRAGLLRAREFVMKDSYSFDLDDDGLKRSYEAHRET 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+RIF RLGL      A SG +GG  S EF+     GE             
Sbjct: 183 YIRIFDRLGLDYRICFAVSGAMGGSASEEFLAPCPNGEDTFVACHGCGYAA 233



 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 267 LFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             D+ P         RGIE+GHIF  G KYS        G DGK   + MGSYGIG  R+
Sbjct: 403 PGDACPRCGGPLSIDRGIEIGHIFQLGRKYSDAAGLDALGPDGKPIRITMGSYGIGVSRL 462

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VA + E  HD  G++WP  VAP  + ++      +   +   ++   L   G  V  DD 
Sbjct: 463 VAVIAEQRHDELGLVWPREVAPADVHIV--GTGKENQIEVAVELAETLESRGLRVLVDDR 520

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            G   G +F  A+LLG P  VIVG + +++  +E++ R +G RE++ L E  +  
Sbjct: 521 PGVSPGVKFKDAELLGMPTIVIVG-RGLANGVLELRDRASGAREEIPLGEAADRI 574


>gi|257440090|ref|ZP_05615845.1| threonine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257197442|gb|EEU95726.1| threonine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 611

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 161/449 (35%), Gaps = 41/449 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREE 60
           +  L   ++  ++A    H+ + +   +        +G+  +LP G      +   I+E+
Sbjct: 192 QEELEAWEKEQQEARERDHRKIGKEMGLFMTDDLVGRGLPMFLPAGYTVWQELENYIKEK 251

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           +   G + +  P + + +L+  SG +D Y + M    +   ++ +  P +      I+ +
Sbjct: 252 ERARGYLHVMTPCIGTVNLYKTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIYAN 311

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP    +I   FR E      G+ R R F   DA+ F  TPE  K     +  
Sbjct: 312 RPHSYRDLPMRIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLF-CTPEQIKSEVADVCN 370

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +    +                        D  + + +   D M           
Sbjct: 371 LIFETYKDFKITDYRCVLSLR--------------DPADKKKYHDDDAMWNHAE---NAL 413

Query: 240 DDIISLNSIVEQWTAPYAATSDVH-NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++++   I        AA      +  +  ++     +S   ++    F    K+    
Sbjct: 414 REVLTELGIHFTEEIGEAAFYGPKLDVNVKPAVGAEYTLSTCQLD----FCLPAKF---- 465

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DG +   V +    +G++    A +     GK   W   +AP ++ ++ +   
Sbjct: 466 HLTYVDKDGSEKTPVVLHRAILGSLDRFMAYLIEETKGKFPTW---LAPVQVKVLPV--- 519

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKV 416
            +   +  E I  +L + G  V  DD  ++IG +   A  +   P  +++G+K      +
Sbjct: 520 SEKTLEYAESITEKLVEAGVRVALDDDNQKIGYKIRAAQQVDRVPYMLVLGAKEAEAGNL 579

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    M ++E I   +      
Sbjct: 580 SVRDRK-GETTTMEVDEFIAKVTEEIKTR 607


>gi|325962798|ref|YP_004240704.1| prolyl-tRNA synthetase, family II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468885|gb|ADX72570.1| prolyl-tRNA synthetase, family II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 603

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/233 (43%), Positives = 141/233 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG   L  V A+IREE 
Sbjct: 4   RLSQLFLRTLREDPVDAEVASHRLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEAVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + +  
Sbjct: 64  AAIGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYAAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           LRIF RLGL+ IP+ A +G +GG  S EF+   D GE     S       + +
Sbjct: 184 LRIFERLGLEVIPVTATAGAMGGSKSEEFLHPTDIGEDTFVRSAGGYAANVEA 236



 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 7/261 (2%)

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             L  + + ++   GP  G    E ++ A++    ++     +           +    +
Sbjct: 345 EDLKKQPLIVKGYLGP--GMSLDESLLGAESATKLLYLVDPRVVRGTAWITGANEAGKHV 402

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFK 303
             +V      +    +    +  D  P+       ARGIE+GHIF  G KY+  +     
Sbjct: 403 YGLVAGRDFTWDGVIECTEVREGDPAPDGSGPLEIARGIEMGHIFQLGRKYAEALELKVL 462

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +GK   V MGSYG+G  R VAA+ ES+HD +G++WP +VAP  + ++ +   +++   
Sbjct: 463 DQNGKQVTVTMGSYGVGVTRAVAALAESNHDARGLVWPRAVAPADVHVVAVGKGEEIF-A 521

Query: 364 ACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E++ A L   G DV  DD  +   G +F  A+L+G P  + VG + + D  VEIK R 
Sbjct: 522 TAERLAAELEAAGLDVLLDDRPKVSPGVKFGDAELVGVPTILAVG-RGLVDGVVEIKDRR 580

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +G  E++++++ ++Y  +   
Sbjct: 581 SGEAENVAVDKAVDYVVNAVR 601


>gi|182419388|ref|ZP_02950640.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237666667|ref|ZP_04526652.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376719|gb|EDT74291.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657866|gb|EEP55421.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 643

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 160/446 (35%), Gaps = 40/446 (8%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL  L+E   RD      +L L T    +  +G+   +P G K +  +   + +E+ + G
Sbjct: 229 FLEALEEAKKRDHNKLGRELKLFT-TDEKVGQGLPLLMPKGAKIVQTLQRWVEDEEEKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M  L D   +D+     P        I+ +   
Sbjct: 288 YVLTKTPLMAKSDLYKVSGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPFQYTIYNAEQH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    FR+E      G++R R+F + D +   +TPE  +  +  +     
Sbjct: 348 SYRDLPIRYAETSTLFRNEASGEMHGLIRVRQFTLADGHLI-VTPEQLEEEFKGVVELIQ 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG+        S               D   T+ + +             +  D 
Sbjct: 407 YLMETLGIAEKITYRFSK-------------WDPNNTEKYINDPDAWNHTQDTMRNILDH 453

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           + +N +               +E  F     + +      +   +F     ++L      
Sbjct: 454 LKINYVEAD------------DEAAFYGPKLDLQFRNVHGKEDTLFTVQIDFALAERFDM 501

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   +G K     +    IG      A++   + G    W   ++P +  ++ +     
Sbjct: 502 TYIDKNGEKKRPYIIHRSSIGCYERTLAMLIEEYAGAFPTW---LSPVQAKILPL---SD 555

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  EK+   L   G  V  D   E+IG +   A L   P  ++VG K   +++V ++
Sbjct: 556 KYNDYAEKVTKALKDKGIRVETDYRAEKIGYKIREARLERTPYILVVGEKEAENNQVSVR 615

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M L   ++      +N 
Sbjct: 616 SRKNDDEGAMDLNAFVDRIVSEVANK 641


>gi|313887818|ref|ZP_07821498.1| proline--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846161|gb|EFR33542.1| proline--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 567

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/225 (47%), Positives = 158/225 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEIASHK +LR GMI + + G+Y++LPLG +++  +  I+R+E
Sbjct: 1   MRLSKLYMPTLREDPQDAEIASHKFLLRAGMIRKSASGVYTYLPLGYRSIRKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +  +Q A++W ESGR++ +G EM +L DRND+    GPT EE  T + R 
Sbjct: 61  MDKAGAMEILMSAIQPAEIWKESGRWEKFGPEMFKLRDRNDREFCLGPTAEEYFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD +PE    +Y  M+ +
Sbjct: 121 EVKSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDTSPETLHTAYMNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF RL L    +  ++G +GG  SHEFI L++TGE  +  S+
Sbjct: 181 YEKIFDRLELDYKIVEGDNGAMGGTGSHEFIALSETGEGVIVYSE 225



 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVG+IF  GTKYS  ++AT+   +GK +Y  MGSYG+G  R V AVIE +HD  GII
Sbjct: 402 RGIEVGNIFKLGTKYSEALNATYLDENGKANYFYMGSYGVGVTRSVTAVIEQNHDDNGII 461

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAP++  +  +   D+      EKIY  L   G +V  DD  E+ G +F   DL+G
Sbjct: 462 WPISVAPYEAIVTIVNTKDEEQVALGEKIYKELEAKGVEVLLDDRKERPGVKFKDRDLIG 521

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            PL++  G K      VE   R      ++S +E I          R
Sbjct: 522 IPLRITCGKKSGES-IVEYSTRREMENSEISADEAIKNILSEVEKVR 567


>gi|296129352|ref|YP_003636602.1| prolyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021167|gb|ADG74403.1| prolyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 597

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 137/234 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V  ++REE
Sbjct: 3   LRMSTLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEQVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  +GR+  YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MAAIGAQEVHFPALLPKEPYEATGRWTEYGPNIFRLKDRKGGDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G   SY     +
Sbjct: 123 LYSSYKDLPLALYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLAASYEAQRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RLGL+ + + A SG +GG  S EF+     GE     S       + +
Sbjct: 183 YQRIFDRLGLEYVIVAATSGAMGGSRSEEFLTPTAIGEDTFVRSAGGYAANVEA 236



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 82/179 (45%), Gaps = 29/179 (16%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++HD +G+ 
Sbjct: 430 RGIEIGHIFQLGRKYAQALGLTVLDQNGKAQVVTMGSYGIGVTRVLAALAEANHDERGLA 489

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD-- 396
           WP  VAP  + ++     D    +A E +   LS  G +V +DD  +   G +FA A+  
Sbjct: 490 WPADVAPAHVHVLA-TGKDAAVFEAAEALATTLSARGVEVLYDDRPKVSPGVKFADAELL 548

Query: 397 -----------LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                      L              +D  VE++ R  G  E + +    +  +     
Sbjct: 549 GVPLVVVVGRGL--------------ADGVVEVRPRAGGTSEQVPVATAADRVAELVDE 593


>gi|323447698|gb|EGB03610.1| hypothetical protein AURANDRAFT_55515 [Aureococcus anophagefferens]
          Length = 657

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 157/436 (36%), Gaps = 40/436 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            + +   RD  +   KL L +  I + + G +  W P G +    +    +    R G  
Sbjct: 227 RLEEAKKRDHRVLGKKLDLFS--IQEAAGGGLCFWHPRGARIRMLMEDTWKAAHERGGYE 284

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +  P + + DLW  SG +D Y + M    D   +     P +      +++  ++SYR+
Sbjct: 285 LLVTPHIANVDLWKTSGHFDFYAEGMFDQMDVEKEQYQLKPMNCPFHCLVYKDQLRSYRD 344

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LPF + ++   +R E      G+MR R F   DA+ F  TPE  +     +      I  
Sbjct: 345 LPFRWAELGTVYRYERSGTLQGLMRVRGFTQDDAHIF-CTPEQLEDEIVAVLELTEEILS 403

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           + G     +   + P     S E    A          K +                   
Sbjct: 404 KFGFDDYELMLSTRPDKAVGSDEIWTKATAALKGALDRKGWDHGVDEGGG---------- 453

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                     A      + K+ D+L    + S    +    F    ++       ++ A 
Sbjct: 454 ----------AFYGPKIDLKIKDALGRQWQCSTVQCD----FNLPERF----ELEYRAAS 495

Query: 307 GK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+ +  + +     G++    A++  S  G   +W   +AP ++ L+ +       RD  
Sbjct: 496 GQAERPIMVHRAIFGSLERFFAILLESCGGDLPLW---LAPTQMRLLPVTDD---ARDFS 549

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + + A+ ++ G     D   +++  Q   A+    P+  +VG K ++   + ++ R  G 
Sbjct: 550 KAVAAKAAQRGIRCEIDSGKDRLNKQIRNAETQRVPIMCVVGEKEMASGDLAVRARTMGD 609

Query: 426 REDMSLEEVINYASHR 441
              + ++ + +     
Sbjct: 610 LGTIDVDALFDELKDL 625


>gi|296110556|ref|YP_003620937.1| threonyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295832087|gb|ADG39968.1| threonyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 654

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 156/441 (35%), Gaps = 35/441 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD       L L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRTIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELANGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  D   +   P +      +F+   +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFKHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++ +  R E      G+ R RE  + D ++F + PE  +  +  +    + ++ 
Sbjct: 357 LPIRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTF-VEPEKLEEEFKSILTMMMEVYR 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +     R                  D   T+ +   D M     ++     D + L+
Sbjct: 416 DFNITDYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQAQLKRAMDDLKLD 461

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +     A      + +   +L   + +S   ++    F    +++L    T+ GAD
Sbjct: 462 --YYEAEGEAAFYGPKLDVQTKTALGGEETMSTIQLD----FLLPERFNL----TYIGAD 511

Query: 307 GK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G+     V +    +G M    A +   + G    W   ++P ++ +I +        D 
Sbjct: 512 GQDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNL--AAHGDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L   G  V  +    ++G     A     P  +++G   V++  V I+     
Sbjct: 567 ANAVQKELQAAGLRVNVEKKEAKMGYLIREAQTNKVPYTLVLGDSEVNEQTVTIRKYGEE 626

Query: 425 IREDMSLEEVINYASHRFSNN 445
             + ++L +  N+     +N 
Sbjct: 627 KTQTVALADFKNHILADVANY 647


>gi|330466868|ref|YP_004404611.1| threonyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809839|gb|AEB44011.1| threonyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 666

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 145/448 (32%), Gaps = 40/448 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +    R +  +
Sbjct: 250 KAYLKLLEEAARRDHRKLGVDLDLFS-FPDELGSGLAVFHPKGGIIRREMENYSRLKHEQ 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +    L+  SG  D Y   M    +    +    P +  +   IFRS  +
Sbjct: 309 AGYEFVNTPHITKGHLYEVSGHLDWYADGMFPPMEVEGASYYLKPMNCPMHDLIFRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R     DA+ F  T E        +    L
Sbjct: 369 SYRELPLRMFEFGTVYRYEKSGVVHGLTRVRGMTQDDAHIF-CTEEQMAGELKSLLAFVL 427

Query: 183 RIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +    GL    +   +  P     + E    A                P P        
Sbjct: 428 ELLRDYGLDDFYLELSTRNPEKSVGTDENWERATEALRSAAEESGLTLVPDPG------- 480

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    ++S   ++    F    +++L     
Sbjct: 481 -------------GAAFYGPKISVQVKDAIGRTWQMSTIQVD----FNLPERFNL----E 519

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++ ADG     V +     G++     V+   + G    W   +AP ++  I I+     
Sbjct: 520 YQAADGTRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIPIRDD--- 573

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D      A L   G     D   E++  +   A     P  VI G   V+   V  ++
Sbjct: 574 HADYLHGFVAALRAEGIRAQVDSGDERMQKKIRNAQQQKIPFMVIAGDDDVAAGTVSFRY 633

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R    R  + L E + +     +    V
Sbjct: 634 RDGSQRNGVPLAEAVTHVLDVVNTRTNV 661


>gi|116327681|ref|YP_797401.1| prolyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122284523|sp|Q053M7|SYP_LEPBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116120425|gb|ABJ78468.1| Prolyl-tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 576

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 112/227 (49%), Positives = 154/227 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G+  + S G+Y +LPLG K L  +  IIREE
Sbjct: 1   MKASKYILPTEKENPSDAVVASHRLMIRAGLARKSSAGLYFYLPLGLKILQKIKQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNKTGALEFDLPILTPSDFWEQSGRWTAMGKEMFRIKDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 LLKSYKDLPLNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDVSLDETYQSMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  GE  +      
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCNSC 227



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 2/185 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E            + +GIEVGHIF  G KY+          +GK   + MG YGIG  R 
Sbjct: 389 EGDLCPNCNAPLKAEKGIEVGHIFKLGEKYTKAFGIQVLDQNGKARTLTMGCYGIGVNRT 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A VIE  +D KGI WP S+APF+++L++I   ++      E+ Y  L     +VFWDD 
Sbjct: 449 MATVIEQRNDEKGIFWPISIAPFEVTLVSITKGEE-QYSKAEEFYNVLKNENLEVFWDDR 507

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +   ++L+GFP++V +G KF  + ++ I +R     E        N  + R  +
Sbjct: 508 DVGPGFKLKDSELIGFPIRVTIGKKFFENGEISIYNRKADKEESFVFAGFENLIA-RVES 566

Query: 445 NRPVL 449
            R  L
Sbjct: 567 LRQEL 571


>gi|72161176|ref|YP_288833.1| prolyl-tRNA synthetase [Thermobifida fusca YX]
 gi|114152272|sp|Q47RV7|SYP_THEFY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71914908|gb|AAZ54810.1| prolyl-tRNA synthetase, bacterial [Thermobifida fusca YX]
          Length = 582

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 106/224 (47%), Positives = 146/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG+  L+NV A++REE
Sbjct: 3   LRMSNLFLRTLREDPADAEVPSHKLLVRGGFVRRTAPGVYSWLPLGKIVLENVAAVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P L   + +  +GR+  YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MNRIGAQEVLLPALLPREYYEATGRWTEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKG 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P   YQIQ KFRDE RPR G++R REF MKD+YSFDL  EG + SY     +
Sbjct: 123 EYTSYKDYPVILYQIQEKFRDEARPRAGILRGREFHMKDSYSFDLDDEGLQRSYEAHRQA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+ + ++A SG +GG  S EF+ +A TGE     S
Sbjct: 183 YIRIFDRLGLEYVIVKATSGAMGGSASEEFLAIAPTGEDTFVRS 226



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 6/183 (3%)

Query: 264 NEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  D  P+ K    +ARGIE+GH+F  G KY+   S    G DGK   + MGSYGIG 
Sbjct: 402 EVRDGDPAPDGKGTLYTARGIEIGHVFQLGRKYTDAFSLDALGPDGKPVRITMGSYGIGV 461

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            RVVAA++E SHD +GIIWP  VAP  + ++     DQV  +   +I   L   G  V  
Sbjct: 462 SRVVAAIVEQSHDERGIIWPREVAPADVHVVGTGKGDQV--EVALRISQELVDRGVRVLV 519

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           DD  G   G +F  A+LLG P  +IVG + +++  VE++ R +G R ++S++ V++   +
Sbjct: 520 DDRKGVSPGVKFTDAELLGVPTVLIVG-RGLANGVVELRDRASGDRSEVSVDTVVDTIVN 578

Query: 441 RFS 443
              
Sbjct: 579 LVR 581


>gi|323446287|gb|EGB02506.1| hypothetical protein AURANDRAFT_59726 [Aureococcus anophagefferens]
          Length = 452

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 157/436 (36%), Gaps = 40/436 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            + +   RD  +   KL L +  I + + G +  W P G +    +    +    R G  
Sbjct: 22  RLEEAKKRDHRVLGKKLDLFS--IQEAAGGGLCFWHPRGARIRMLMEDTWKAAHERGGYE 79

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +  P + + DLW  SG +D Y + M    D   +     P +      +++  ++SYR+
Sbjct: 80  LLVTPHIANVDLWKTSGHFDFYAEGMFDQMDVEKEQYQLKPMNCPFHCLVYKDQLRSYRD 139

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LPF + ++   +R E      G+MR R F   DA+ F  TPE  +     +      I  
Sbjct: 140 LPFRWAELGTVYRYERSGTLQGLMRVRGFTQDDAHIF-CTPEQLEDEIVAVLELTEEILS 198

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           + G     +   + P     S E    A          K +                   
Sbjct: 199 KFGFDDYELMLSTRPDKAVGSDEIWTKATAALKGALDRKGWDHGVDEGGG---------- 248

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                     A      + K+ D+L    + S    +    F    ++       ++ A 
Sbjct: 249 ----------AFYGPKIDLKIKDALGRQWQCSTVQCD----FNLPERF----ELEYRAAS 290

Query: 307 GK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+ +  + +     G++    A++  S  G   +W   +AP ++ L+ +       RD  
Sbjct: 291 GQAERPIMVHRAIFGSLERFFAILLESCGGDLPLW---LAPTQMRLLPVTDD---ARDFS 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + + A+ ++ G     D   +++  Q   A+    P+  +VG K ++   + ++ R  G 
Sbjct: 345 KAVAAKAAQRGIRCEIDSGKDRLNKQIRNAETQRVPIMCVVGEKEMASGDLAVRARTMGD 404

Query: 426 REDMSLEEVINYASHR 441
              + ++ + +     
Sbjct: 405 LGTIDVDALFDELKDL 420


>gi|304436529|ref|ZP_07396502.1| proline--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370472|gb|EFM24124.1| proline--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 569

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 148/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHQLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ ++LW ESGR+ +YG EM+ + DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPSELWEESGRWGAYGAEMICVKDRHGREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+MKD YSFD    G   SY KM V+
Sbjct: 121 EVRSYKQLPLMLYQIQDKFRDERRPRFGVMRSREFIMKDLYSFDKDIAGMNESYRKMAVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C        
Sbjct: 181 YTNIFTRCGLNFRAVEADSGAIGGGHSEEFTVLAPEGESRIACCDACSYAA 231



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 105/219 (47%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
              M   +   N      I++N   +  +        V    L  S         RGIE 
Sbjct: 349 AMRMHNAVSGANEQDFHYINVNPQRDFGSVTVTDIRLVAEGDLCPSCGVGHLHIGRGIEA 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G IF  GTKYS  M ATF    GK   +QMG YGIG  R +AA IE +HD  GIIWP ++
Sbjct: 409 GQIFALGTKYSEAMGATFLDESGKTQPLQMGCYGIGVGRTMAAAIEQNHDAHGIIWPRAI 468

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+G+P+++
Sbjct: 469 APYEVVVVAVNAKVEEQLAYAEEIYEELRAAGVDVLLDDRRERAGVKFNDCDLIGYPVRI 528

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +G K + +  +E+K R +G   D + +  +       +
Sbjct: 529 AIGPKTIENGTIEVKIRQSGELVDFARDTYLKGVKDMLA 567


>gi|313793980|gb|EFS42004.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801367|gb|EFS42618.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313839912|gb|EFS77626.1| prolyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314963668|gb|EFT07768.1| prolyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315079518|gb|EFT51511.1| prolyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327451998|gb|EGE98652.1| prolyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 581

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 147/244 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRVAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|261368006|ref|ZP_05980889.1| threonine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282569994|gb|EFB75529.1| threonine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 596

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 161/448 (35%), Gaps = 39/448 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREE 60
           +  L   ++  ++A    H+ + +   +        +G+  +LP G      +   I+++
Sbjct: 177 QEELEEWEKQQQEARERDHRKIGKEMRLFMTDDLVGRGLPMFLPNGYIVWQQLEDYIKQK 236

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           +   G + +  P + + +L+  SG +D Y + M    +   ++ +  P +      I+ +
Sbjct: 237 ERERGYLHVMTPCIGTVNLYRTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIYAN 296

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR LP    +I   FR E      G+ R R F   DA+ F +TPE  K     +  
Sbjct: 297 QPHSYRQLPIRIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLF-VTPEQIKDEVAAVCA 355

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++    +                        D  + + +   D M         + 
Sbjct: 356 LIFDVYKDFHITDYRCVLSLR--------------DPADKKKYHDDDAMWNHAEQALREV 401

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              + +    E   A  A      +  +  ++     +S   ++    F    K+     
Sbjct: 402 LTELGIQFTEEIGEA--AFYGPKLDVNVKPAVGAEYTLSTCQLD----FCLPAKF----H 451

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   DG +   V +    +G++    A +     G+   W   +AP ++ ++ +    
Sbjct: 452 LTYVDKDGSEKTPVVLHRAILGSLDRFMAYLIEETKGRFPTW---LAPVQVKVLPV---S 505

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVE 417
           +   D   ++  +L   G     D+  E+IG +  +A      P  +++G+K V    + 
Sbjct: 506 EKTLDYAREVNDKLKAAGIRAVLDESNEKIGYKIRLAQQEDRAPYMLVLGAKEVEAGNIS 565

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           +++R  G    M L+  +       +N 
Sbjct: 566 VRNRK-GETTAMDLDAFVAQVKDEIANK 592


>gi|160894708|ref|ZP_02075483.1| hypothetical protein CLOL250_02259 [Clostridium sp. L2-50]
 gi|156863642|gb|EDO57073.1| hypothetical protein CLOL250_02259 [Clostridium sp. L2-50]
          Length = 591

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 157/436 (36%), Gaps = 36/436 (8%)

Query: 18  AEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           A+   H+ + +   +        +G+  +LP G      +   I+ ++ + G   +  P 
Sbjct: 178 AKDRDHRKIGKEMNLFMSDDLVGRGLPMFLPKGYIVWQELENYIKNKERKLGYRHVMTPC 237

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +L+  SG +D Y   M    +   ++ +  P +      I+ + + SY++LP    
Sbjct: 238 VGTVNLYKTSGHWDHYKDNMFPAMEVEGESFVLRPMNCPHHMMIYANKMHSYKDLPIRIG 297

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-K 191
           +I   FR E      G+ R R F   DA+ F +TPE  +  + ++       +    +  
Sbjct: 298 EIAHDFRFEASGTLKGIERGRHFCQNDAHLF-VTPEQIESEFKQVVDLIFDTYKDFNITD 356

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              + +   P      H+   + +T E  +                    +  +     +
Sbjct: 357 YRCVLSLRDPEDKVKYHDDDEMWNTAEDALRKV-----------------LDDIGIEYTE 399

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                A      +  +  ++     +S   ++    F    K++L    T+   DG K  
Sbjct: 400 EIGEAAFYGPKLDVNVKPAIGNEYTLSTCQLD----FCLPAKFNL----TYIDKDGTKKT 451

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++    A I     G   +W   +AP +  ++ +K  D+       ++Y 
Sbjct: 452 PVVLHRAILGSLDRFMAYILEETKGNLPLW---LAPVQARILPVKNEDEELNAYAHELYD 508

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L      V  D+  E++G +   A +   P  +I+G   V+D  V  +         + 
Sbjct: 509 FLDDNNIRVEIDERAEKLGYRVRAAQVEKVPYLIILGKNEVNDKTVSYRLHGEQKTTTVP 568

Query: 431 LEEVINYASHRFSNNR 446
           ++E +          +
Sbjct: 569 MDEFLAMLQDEIKTKK 584


>gi|262038762|ref|ZP_06012119.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261747220|gb|EEY34702.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 636

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 177/448 (39%), Gaps = 51/448 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  + +L +L+E    AE   H+ + +      + +H  G   ++P G + ++ +  I R
Sbjct: 225 KELEDYLTMLEE----AERRDHRKLGKQMDLFFLDEHGPGFPFFMPKGMELMNKLQEIWR 280

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  +    E+  P +   +LW  SG + +Y + M   ++ ++K     P +       +
Sbjct: 281 KEHKKRKYEEIRTPVMLDKELWEISGHWFNYRENMYT-SEIDEKVYAIKPMNCPGSIIAY 339

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++++ SY++LP  + ++ L  R E      G+MR R F   DA+ F  T E  +    ++
Sbjct: 340 KNNLHSYKDLPLKYGEMGLVHRHEFSGALHGLMRVRAFTQDDAHVF-CTKEQIEEQIIEI 398

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y + +   G     +   + P     S E   +A+         K       P +  
Sbjct: 399 IDLYDKFYTLFGFDY-NIELSTKPEKAIGSDEIWAVAEADLASALEKKGIKYKLNPGDGA 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                               +    R  + G I      ++LP
Sbjct: 458 FYGPKIDFK---------------------------MRDSIGRIWQCGTI---QLDFNLP 487

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                ++ GADG+ H  V +     G+M     ++   + G    W   +AP +  ++ I
Sbjct: 488 ARFEMSYIGADGEKHEPVMIHRAMYGSMERFIGILIEHYAGAFPTW---LAPVQARILTI 544

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSD 413
               +      EK+Y  L + G  V  D   E+IG +   A+     P+Q+I+G   V +
Sbjct: 545 ---SKEQVPFAEKLYEELQEAGIRVDIDTRDEKIGYKIREANGDQKIPVQLIIGKNEVEN 601

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++V ++   +   +++S++E+++     
Sbjct: 602 NEVNVRRFGSQDSQNVSVKEIVDMLLEE 629


>gi|254432589|ref|ZP_05046292.1| prolyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197627042|gb|EDY39601.1| prolyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 615

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 149/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G + +   GIY++LPL  + L  V+AI+REE
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRAGYMRRIGSGIYAYLPLLWRVLRKVSAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P +Q A+LW  SGR+  Y      M  L DR  +AM  GPTHEEV+T +
Sbjct: 61  LDAIGALETLLPQMQPAELWQRSGRWSGYTDGEGIMFHLEDRQGRAMGLGPTHEEVVTAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y  M
Sbjct: 121 AADLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEASLRRTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  V  S D        
Sbjct: 181 DRAYARIFRRCGLRALAVEADSGAIGGSASQEFMVTADAGEDLVLSSADGRYAANQE 237



 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 98/184 (53%), Gaps = 1/184 (0%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                 P+    S+RGIEVGHIF  G KYS  M A+F    G++  + MG YGIG  R+ 
Sbjct: 424 DRCVHDPDQCLQSSRGIEVGHIFQLGRKYSSAMEASFTNEAGEEEPLWMGCYGIGVSRLA 483

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A +E  HD +GI WP  +APF++ ++     D       E+IYA L + G D   DD  
Sbjct: 484 QAAVEQHHDDQGIRWPTPIAPFEVIVVVANGADATQAALGEQIYATLQQAGVDTLLDDRS 543

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+ G +F  ADL+G P +V+VG +   D +VE+  R  G+R D++ E ++       +  
Sbjct: 544 ERAGVKFKDADLIGIPWRVVVG-RGAPDGQVELVRRADGVRVDLAAEALLERLLPALARE 602

Query: 446 RPVL 449
           R  L
Sbjct: 603 RRGL 606


>gi|269219602|ref|ZP_06163456.1| proline--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210844|gb|EEZ77184.1| proline--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 594

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 99/232 (42%), Positives = 137/232 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  +  I+REE  
Sbjct: 1   MSSLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLRKIERIVREEME 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G+ E+  P L   + +  SGR+  YG  + +L DR +   +  PTHEE+ T + +   
Sbjct: 61  AAGSQEVHFPALLPREPYEASGRWSDYGPTLFKLKDRKESDYLLAPTHEELFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR GV+RSREF+MKDAYSFD+   G   SY  M  +Y 
Sbjct: 121 SSYKDLPLSLYQIQTKYRDEARPRAGVIRSREFVMKDAYSFDVDEAGLDASYAAMRSAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RLGL  +   A SG +GG  S EF+   + GE     S         +
Sbjct: 181 RIFARLGLPFVICSAVSGAMGGSRSEEFLFPCEIGEDAFVRSAGGYAANTEA 232



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 4/166 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KY+  +  +    +GK   V MGSYGIG  RV+AA+ E +HDG+G++
Sbjct: 426 KGIEVGHIFQLGRKYAKALGLSVLDENGKSRTVTMGSYGIGITRVLAALAEENHDGRGLM 485

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP SVAP  + ++     D     A E+I A L   G +V  DD  +   G +FA  +LL
Sbjct: 486 WPASVAPAHVHIVA-AGKDDALYAAAEEIAAGLEADGVEVLLDDRRKVSAGVKFADYELL 544

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P  V+VG + +++  VEI+ R  G   +  +E+          +
Sbjct: 545 GVPFGVVVG-RGLAEGLVEIRDRA-GETIEAPVEQARERIGELVRS 588


>gi|114559271|ref|XP_001168925.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 8 [Pan
           troglodytes]
          Length = 701

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 157/446 (35%), Gaps = 44/446 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 286 LLRAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 345

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PTL S  LW +SG ++ Y ++M  +    D  +   P +      +F    +
Sbjct: 346 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQHITD-TLALKPMNCPAHCLMFAHRPR 404

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP          R E      G+ R R F   DA+ F  T +  +           
Sbjct: 405 SWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT-DQLEAEIQSCLDFLR 463

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG     +   + P G         L D  E  +  +      P           
Sbjct: 464 SVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALKEFGEP----------- 508

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  +  +   A      +  L D+L    +     ++    F    ++       +
Sbjct: 509 ------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD----FQLPLRF----DLQY 554

Query: 303 KGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I + +  +  
Sbjct: 555 KGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLSPFQVVVIPVGSEQE-- 609

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  ++    L   G     D D G  +  +   A L  +  Q +VG K  S   V I+ 
Sbjct: 610 -EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKEQSKRTVNIRT 668

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R      +  L E +        N R
Sbjct: 669 RDNRRLGEWDLPEAVQRLVE-LQNTR 693


>gi|56963999|ref|YP_175730.1| prolyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|81822102|sp|Q5WFT6|SYP_BACSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56910242|dbj|BAD64769.1| proline-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 566

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 109/225 (48%), Positives = 156/225 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S Y  P +++ P DAE  SH+LMLR GM+ Q + G+Y++LPL ++ +  + AIIREE
Sbjct: 1   MRQSTYLAPTMRDVPADAEAISHQLMLRAGMMRQIAAGVYAYLPLAKRTIAKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++P+L  A+LW  SGR+++ G E++RL DR+++    GPTHEEV+T + + 
Sbjct: 61  LDAIGAQELTLPSLHPAELWQASGRWEAMGDELVRLKDRHNRDFALGPTHEEVITSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE RPRFG++R REF+MKDAYSF  +PE    +Y +M  +
Sbjct: 121 GIASYKKLPLCVYQVQTKFRDERRPRFGLLRGREFIMKDAYSFHDSPESLDEAYWQMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R+GL+  P+ A+SG +GG  +HEF+ LA  GE  V  S 
Sbjct: 181 YSRIFTRVGLEFRPVIADSGAMGGKDTHEFMALASVGEDTVVYSD 225



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 3/204 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSA 300
               ++         A  D+   +  D  P+ K       GIE+G IF  GT+YS  + A
Sbjct: 364 YHYVNVGPGRDYEVTAYKDLRTVREGDPSPDGKGTLRFAEGIEIGQIFKLGTRYSESLDA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +    GK     MG YGIG  R +AAVIE  HD  GI+WP +VAPF + L+ +   ++ 
Sbjct: 424 KYLDGQGKAQPFLMGCYGIGVSRTLAAVIEQHHDEAGIVWPKAVAPFDVHLLALNVKNED 483

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   E++Y+ + + G DV +DD  E+ G +F  ADL+G P++V VG +   +  +E+K 
Sbjct: 484 QKTLAEQLYSDIRQAGIDVLYDDRPERAGVKFKDADLIGLPVRVAVGKR-AGEGIIEVKV 542

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG + +++  E++ + +     
Sbjct: 543 RKTGEQLELTASELVRWLNDFLRE 566


>gi|16553656|dbj|BAB71554.1| unnamed protein product [Homo sapiens]
          Length = 433

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 152/437 (34%), Gaps = 44/437 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 22  EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 81

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 82  VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 140

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P       +  R+EL     G+   R F   DA+ F  T E  +            ++  
Sbjct: 141 PIRCADFGVLHRNELSGTLSGLTGVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 199

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 200 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 247

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 248 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 290

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 291 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 344

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++ R   
Sbjct: 345 LQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNK 404

Query: 425 IREDMSLEEVINYASHR 441
           I  ++ +   I+   + 
Sbjct: 405 IHGEILVTSAIDKLKNL 421


>gi|113475053|ref|YP_721114.1| prolyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|123161090|sp|Q116D3|SYP_TRIEI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110166101|gb|ABG50641.1| prolyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 601

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 111/234 (47%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL++R G I +   GIY++LPL  + ++ V+ I+REE
Sbjct: 1   MRLSQMLLVTLRDDPAEAEIPSHKLLIRAGYIRRIGNGIYAYLPLMLRVINKVSTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPAELWQESGRWDTYTQAEGIMFSLIDRQNRELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 AKDIIRSYRQLPIHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHADEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  +  R GL+   + A+SG IGG  S EF+VLAD GE ++  ++D     
Sbjct: 181 DKAYRNMLRRSGLQFRAVDADSGAIGGSASQEFMVLADAGEDEILYTQDGKYAA 234



 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 1/175 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  A +
Sbjct: 425 HDPSKTLETARGIEVGHIFQLGTKYSEAMGATYTNEQGQEVPLLMGCYGVGVSRLAQAAV 484

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+ + +      D    +    +Y  L++ G D   DD  E+ G
Sbjct: 485 EQSYDKDGIIWPVAIAPYHVVICIPNIKDTQQIEVAGNLYKELNEAGIDTILDDRDERAG 544

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F  ADL+G P +++ G + +   KVE+  R T   +++ + +V++        
Sbjct: 545 VKFKDADLIGIPYRIVTG-RSLKSGKVELIERSTHQCQEIVVAQVLSTLKDLIEK 598


>gi|302682704|ref|XP_003031033.1| hypothetical protein SCHCODRAFT_77271 [Schizophyllum commune H4-8]
 gi|300104725|gb|EFI96130.1| hypothetical protein SCHCODRAFT_77271 [Schizophyllum commune H4-8]
          Length = 728

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 158/445 (35%), Gaps = 44/445 (9%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +    +A    H+ + R       H  S G   +LP G +  + +  ++R E  + G  E
Sbjct: 313 KAFLAEAAKRDHRKIGREQELFFFHDLSPGSCFFLPHGTRIYNTLIELMRSEYFKRGYQE 372

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +A LW  SG +++Y  +M  L D         P +      IF S  +SYR L
Sbjct: 373 VISPNMYNAKLWETSGHWENYKDDMFTL-DIEKDNWALKPMNCPGHCLIFDSRDRSYREL 431

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +  +  R+E      G+ R R F+  D + F + P   +     +F     ++  
Sbjct: 432 PIRMAEFGIIHRNEASGALSGLTRVRRFVQDDTHIFCM-PSQVEAEMAGLFDFMQHVYGI 490

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G +   +   + P       E    A+    Q         + +   +  F       +
Sbjct: 491 FGFEF-HLELSTRPEKYLGEVETWNAAEDQLKQALEKYYPGKWELNPGDGAFYGPKIDIT 549

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           I                    D+L    + +   ++    F    +++L         + 
Sbjct: 550 IR-------------------DALKRAYQCATIQLD----FQLPQRFNLKYR---SNNEE 583

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               + +    +G++    A+      GK   WP  ++P ++ +I + A     ++   +
Sbjct: 584 VQRPIIIHRAILGSIERFVAIATEHFAGK---WPFWLSPRQVLVIPVAA---PYKEYASE 637

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIR 426
           +   LSK       D+    +  +    ++  +   ++VG   +    V +++R   G +
Sbjct: 638 VAETLSKANLYAEVDNSDNTLQKKIRNGEIAQYNFILVVGETELESKSVNVRNRDDVGTK 697

Query: 427 ---EDMSLEEVINYASHRFSNNRPV 448
                + L ++++    +   +R +
Sbjct: 698 ARSATIPLADIVDKLV-KLKESRSL 721


>gi|15643280|ref|NP_228324.1| prolyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|81859132|sp|Q9WYY4|SYP_THEMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4981026|gb|AAD35599.1|AE001727_11 prolyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 577

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 156/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEQFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V   +  
Sbjct: 181 YSRIMERLGVRYMIIEAETGAIGGNASHEFVVPAKIGETNVLFCEKC 227



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSL 296
            ++     +             D+      D  P       + +GIE+GHIF  GTKYS 
Sbjct: 359 MEEDTHYVNANHPRDFKVDEWYDLRTVVEGDPCPVCGEPLKATKGIELGHIFKLGTKYSE 418

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M A F   +G+     MG YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  
Sbjct: 419 AMKAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDILNM 478

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D   +   EKIY  LS+ G +V  DD     G +F  ADL+GFP+++ VG + + +  V
Sbjct: 479 NDAEQKQVGEKIYQVLSEKGEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVV 537

Query: 417 EIKHRLTGIREDMSL 431
           E+K R +     +++
Sbjct: 538 ELKKRYSKELVKVNI 552


>gi|331232891|ref|XP_003329107.1| threonyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309308097|gb|EFP84688.1| threonyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 765

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 154/453 (33%), Gaps = 38/453 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD         L     H+ S G   WLP G +  + +    + E
Sbjct: 338 MAEYKKFL--EEAAKRDHRKIGKDQDLF--FFHELSPGSCFWLPHGTRIYNTLVEFFKSE 393

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +A LW  SG +++Y   M +L D   +     P +      IF S
Sbjct: 394 YRKRGYDEVISPNMYNAKLWQTSGHWENYADSMFKL-DIEKETFGLKPMNCPGHCLIFGS 452

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R F   DA+ F  T E        +F 
Sbjct: 453 RDRSYRELPIRMADFGVLHRNEASGALSGLTRVRRFCQDDAHHFCTT-EQIDSEMAGIFD 511

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG     ++  + P       E   LA+    Q                   
Sbjct: 512 LLKTVYGMLGFTY-KLKLSTRPDNYIGDLEVWNLAEKRLGQAL----------------- 553

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D        +      A      +  + D+L    + +   ++      F  +Y     
Sbjct: 554 -DEFVGPGEWDVDPGDGAFYGPKIDITISDALKRRHQCATIQLDFQLPERFKLQYRTDQG 612

Query: 300 AT--FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                 GA+ +   V +    +G++    A++     GK   WP  ++P ++ +I + A 
Sbjct: 613 GQGAEAGAEERKRPVMIHRAIMGSVERFTAILTEHFAGK---WPFWLSPRQVMVIPVAA- 668

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   +++  +L   G     D     +  +    ++  +   ++VGS+ +    V 
Sbjct: 669 --PHKAYAQEVAQKLWDAGLYADADMSDATLPKKIRNGEVASYNFILVVGSEELESRSVN 726

Query: 418 IKHRLT----GIREDMSLEEVINYASHRFSNNR 446
           ++        G  E +  E  +       +  R
Sbjct: 727 VRSADDVGQKGKAEALPFEAALEKLLSLKNERR 759


>gi|16078720|ref|NP_389539.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309535|ref|ZP_03591382.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313859|ref|ZP_03595664.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318782|ref|ZP_03600076.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323054|ref|ZP_03604348.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315424|ref|YP_004207711.1| prolyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|11134893|sp|O31755|SYP_BACSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2634029|emb|CAB13530.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484212|dbj|BAI85287.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320021698|gb|ADV96684.1| prolyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 564

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIQNIQQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKIDAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y KM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASAESLDETYQKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R G+   P+ A+SG +GG  +HEF+ L+  GE  +  S +     
Sbjct: 181 YSNIFARCGINVRPVIADSGAMGGKDTHEFMALSAIGEDTIAYSDESQYAA 231



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 63/161 (39%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD KG+IW
Sbjct: 405 GIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGIGVSRTLSAIAEQHHDEKGLIW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SVAP+ + ++ +   +   R+  EK+YA L   G +V +DD  E+ G +FA +DL+G 
Sbjct: 465 PKSVAPYDLHILALNMKNDGQRELAEKLYADLKAEGYEVLYDDRAERAGVKFADSDLIGL 524

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P+++ VG +   +  VE+K R TG   ++S++E+  + S +
Sbjct: 525 PIRITVGKR-ADEGIVEVKIRQTGESTEISVDELSAFISKQ 564


>gi|148269548|ref|YP_001244008.1| prolyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166980169|sp|A5IJQ9|SYP_THEP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147735092|gb|ABQ46432.1| prolyl-tRNA synthetase [Thermotoga petrophila RKU-1]
          Length = 577

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 156/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEEFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V   +  
Sbjct: 181 YSRIMERLGVRYMIIEAETGAIGGNASHEFVVPAKIGETNVLFCEKC 227



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSL 296
            ++     +             D+      D  P       + +GIE+GHIF  GTKYS 
Sbjct: 359 MEEDTHYVNANHPRDFKVDEWYDLRTMVEGDPCPVCGEPLKATKGIELGHIFKLGTKYSE 418

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M A F   +G+     MG YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  
Sbjct: 419 AMKAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDILNM 478

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D   +   EKIY  LS+ G +V  DD     G +F  ADL+GFP+++ VG + + +  V
Sbjct: 479 NDAEQKQVGEKIYQVLSEKGEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVV 537

Query: 417 EIKHRLTGIREDMSL 431
           E+K R +     +++
Sbjct: 538 ELKKRYSKELVKVNI 552


>gi|116330596|ref|YP_800314.1| prolyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281649|sp|Q04U64|SYP_LEPBJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116124285|gb|ABJ75556.1| Prolyl-tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 576

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 112/227 (49%), Positives = 154/227 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G+  + S G+Y +LPLG K L  +  IIREE
Sbjct: 1   MKASKYILPTEKENPSDAVVASHRLMIRAGLARKSSAGLYFYLPLGLKILQKIKQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNKTGALEFDLPILTPSDFWEQSGRWTAMGKEMFRIKDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 LLKSYKDLPLNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDVSLDETYQSMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  GE  +      
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCNSC 227



 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 2/185 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E            + +GIEVGHIF  G KY+          +GK   + MG YGIG  R 
Sbjct: 389 EGDLCPNCNAPLKAEKGIEVGHIFKLGEKYTKAFGIQVLDQNGKARTLTMGCYGIGVNRT 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A VIE  +D KGI WP S+APF+++L++I   ++      E+ Y  L     +VFWDD 
Sbjct: 449 MATVIEQRNDEKGIFWPISIAPFEVTLVSITKGEE-QYSKAEEFYNVLKNENLEVFWDDR 507

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +   ++L+GFP++V +G KF  + ++ I +R     E        N  + R  +
Sbjct: 508 DVGPGFKLKDSELIGFPIRVTIGKKFFENGEISIYNRKADKEESFVFAGFENLIA-RVES 566

Query: 445 NRPVL 449
            R  L
Sbjct: 567 LRQEL 571


>gi|239618079|ref|YP_002941401.1| prolyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|259511603|sp|C5CFP9|SYP_KOSOT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239506910|gb|ACR80397.1| prolyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 581

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 105/228 (46%), Positives = 153/228 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P DA++ S KL++R G + +++ G+Y++LPLG + L  V  I+REE
Sbjct: 1   MRFSQLYAPTLKEAPSDADLVSIKLLIRGGFVRKNAAGVYTYLPLGLRVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P +Q A+LW ESGR+D YG EM++  DR+++    GPTHEE++T I R+
Sbjct: 61  MAAIGCQEILMPIIQPAELWFESGRWDDYGPEMMKFKDRHERDFTLGPTHEELLTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR  P + +QI  K+RDE+RPRFG++R+REFLMKDAYSF    E    +Y   + +
Sbjct: 121 ELRSYRQFPLSLFQIANKYRDEIRPRFGLIRAREFLMKDAYSFHTDWESLDKAYKDFYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y RI  R+GLK + + A++G IGGD SHEF  LADTGE+ +       
Sbjct: 181 YGRIMERIGLKYLVVEADTGAIGGDESHEFNALADTGESTLLYCDCGY 228



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 8/212 (3%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
                +            D+      D  P+        +GIE+GHIF  GTKYS  M+ 
Sbjct: 366 YHYKGVCLGRDFSVDEWFDLKLAVEGDPCPKCGKPMKMTKGIELGHIFKLGTKYSEKMNG 425

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G++H   MG YG G  R ++AV+E  HD  G+IWP S+APF I +  +    + 
Sbjct: 426 YFTDENGENHPYIMGCYGWGISRTMSAVVEQMHDEHGMIWPLSIAPFHIIITMVNPSQEQ 485

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E++Y  L +   +V  DD     G +F  ADL+G PL++ VG K ++   +E+K 
Sbjct: 486 ISKVGEELYELLKEK-YEVLLDDRQASPGVKFKDADLIGIPLRITVGKK-LTKGLIELKL 543

Query: 421 RLTGIREDMSLEE----VINYASHRFSNNRPV 448
           R      ++S+ E    V+           P 
Sbjct: 544 RTEKQLVEVSISEGYDSVLETVEKLLKKYDPA 575


>gi|255654136|ref|ZP_05399545.1| prolyl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296449825|ref|ZP_06891592.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296877889|ref|ZP_06901909.1| proline--tRNA ligase [Clostridium difficile NAP07]
 gi|296261312|gb|EFH08140.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296431086|gb|EFH16913.1| proline--tRNA ligase [Clostridium difficile NAP07]
          Length = 571

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEVPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE +V          
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSTEFMVKSEVGEDEVVFCSGCDYAA 231



 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 17/224 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GPIG +  + FI      +  +    +  ++ I + N                       
Sbjct: 334 GPIGINADYVFIDKEIVEQRNIVVGANKTEYHIKNANYG--------------RDFEGVV 379

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D  N +  D      +    ARG+EVGHIF  GTKYS  M+A F   DGK   + MG Y
Sbjct: 380 GDFRNVQEGDKCIVCGKPLEIARGVEVGHIFKLGTKYSESMNANFIDRDGKSKPIVMGCY 439

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R  AA+IE  +D KGIIWP SVAP+ + ++     ++      EKIY  L  +G 
Sbjct: 440 GIGVERTAAAIIEQHNDEKGIIWPLSVAPYHVVIVPANMKNEEQISIAEKIYNDLQAMGV 499

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +V  DD  E+IG +F  ++L+G P+++ VG K +++ KVE K R
Sbjct: 500 EVLLDDRDERIGVKFNDSELIGIPMRITVG-KNINEGKVEFKFR 542


>gi|325290366|ref|YP_004266547.1| Prolyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965767|gb|ADY56546.1| Prolyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 571

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 111/232 (47%), Positives = 147/232 (63%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AEI SH+LMLR G I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRVSQLLNPTLREVPAEAEIVSHQLMLRAGFIRKVAGGVYTYLPLALRVLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q ++LW E+ R+D YG EM RL DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNAKGGQELLLPIVQPSELWKETKRWDIYGPEMFRLKDRHDREFCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   E    SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDAEAGAESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R GL   P+ A+     G   +HEF+VLAD+GE  V          
Sbjct: 181 YTKIFSRCGLTFRPVEADAGAIGGTGGTHEFMVLADSGEAAVVFCPACAYAA 232



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 99/176 (56%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     ARGIEVG +F  GTKYS  + AT+    G++    MG YGIG  R +AA 
Sbjct: 395 CPCCGVPLQEARGIEVGQVFNLGTKYSEALKATYLDEKGQEKLCYMGCYGIGVSRTMAAA 454

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE +HD  G+IWP  +APF+  ++ +    +   +  EK+YA++ + G +V  DD  E+ 
Sbjct: 455 IEQNHDTNGVIWPIPIAPFECIIVPVSLKSEAVVETSEKLYAQMLEAGIEVIIDDRDERP 514

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F  ADL+G+PL++ +G K +++ KVE+  R TG  E + +E+V+         
Sbjct: 515 GVKFKDADLIGYPLRINIGEKSLAEGKVELFRRKTGQMELLDIEQVMTTVMSMIKQ 570


>gi|187250976|ref|YP_001875458.1| threonyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|186971136|gb|ACC98121.1| Threonyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 583

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 157/441 (35%), Gaps = 33/441 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y     +   RD      +L L + +      G+    P G      V   IR+E 
Sbjct: 164 KLNEYIKQQEEAAKRDHRKLGIELDLFS-ISEDIGPGLILMHPKGGMLRKVVEDWIRDEN 222

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P +    LW +SG  + Y + M +  + +D+     P +      I+ SH
Sbjct: 223 IKHGYDLVYSPHIARLHLWQKSGHANFYSENMFQPIEVDDQQYQLKPMNCPFHIAIYESH 282

Query: 122 IKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    ++   +R E      G++R R F   DA+ F  TPE         F  
Sbjct: 283 LRSYRDLPVRLAELGTVYRYERSGVVHGLLRVRGFTQDDAHIF-CTPEQMNGEIEDCFNF 341

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +    G +   +   +               +T        K   +    +  +   
Sbjct: 342 AMLVMKTFGFEKFSVELST-------------WDETKPENYTGGKKDWEEAQNALESVLK 388

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                N          A      + K+ D++    ++S    +    F    K+      
Sbjct: 389 K---NNVPFTVHAGEAAFYGPKIDIKVMDAIGRYWQLSTIQFD----FNLPQKF----EL 437

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +   +G+   + +    +G++     V+   + G   +W   +AP ++ L+ +      
Sbjct: 438 EYVSPEGRKRPLMVHRALLGSIERFLGVLIEHYAGLFPLW---LAPVQVKLLTLTDD--- 491

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +  ++   G     D   E++G +   A +   P  +++G+K   +  + ++ 
Sbjct: 492 QFDFAKDVVKQMKLAGLRAELDSRPEKLGLKIREAHVEKIPYSIVIGAKEAENKTLTLRL 551

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R     E +S+ +VI      
Sbjct: 552 RSGKNVEGLSVGDVIAKLKEE 572


>gi|170782218|ref|YP_001710551.1| prolyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189083492|sp|B0RDZ1|SYP_CLAMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169156787|emb|CAQ01950.1| prolyl tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 590

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 112/300 (37%), Positives = 156/300 (52%), Gaps = 8/300 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ASH+L++R G I + + GI++WLPLG +  + V AI+REE 
Sbjct: 4   RLSKLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGIFAWLPLGLRVKNKVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R GA E+  P L  A+ +  +GRYD YG  M RL DR    M+  PTHEE    + +  
Sbjct: 64  ERIGAQEVHFPALLPAEPYQATGRYDEYGPGMFRLEDRKRAPMVLAPTHEEFFALLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLSIYQIQDKYRDEARPRAGILRGREFTMKDAYSFDHTDAGLAVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+ + + A++G +GG  S EF+     GE     S       + +  T   +
Sbjct: 184 ERIFQRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGEDTFVRSPGGYAANVEAFTTLVPE 243

Query: 242 IISLNSIVEQWTAPYAATSDVHN--------EKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            I +             T  +          E   D        + + I +      GT+
Sbjct: 244 SIPIEGQPAARVFDSPDTPTIQTLVDLANAREPREDGRAWTAADTLKNIVLALTHLDGTR 303



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 3/158 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARG E+GH+F  G KY+  +       +GK   V MGSYGIG  R +A V E++ DG+G
Sbjct: 427 TARGTEIGHVFELGRKYAEALGLKVLDENGKLVTVTMGSYGIGITRNLALVAEATQDGRG 486

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD 396
           ++WP S++PF + ++ +   D     A E++   L   G DV +DD  +   G +F  A+
Sbjct: 487 LLWPASISPFDVHVV-MTGKDPAVGTAAEELVDALDAAGLDVLFDDRPKVSPGVKFGDAE 545

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           L+G P  VIVG +   D   E+  R T  R  ++L +V
Sbjct: 546 LIGVPTVVIVG-RGAVDGMAELWDRRTNERTPVALADV 582


>gi|320528406|ref|ZP_08029568.1| threonyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131320|gb|EFW23888.1| threonyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 591

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 164/450 (36%), Gaps = 40/450 (8%)

Query: 8   LPILQE------NPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAII 57
           LP  +E      +  DA+   H+ + +   I         G+  WLP G      ++  I
Sbjct: 163 LPTQEELDSHLADLEDAKQRDHRKLGKDMQIFMFSDIVGGGLPLWLPNGLTVRRLLSDYI 222

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
             ++   G   +  P++ S  L+  SG    Y  +M  +  R+D   +  P +      I
Sbjct: 223 MNKELARGYQHVLTPSVASTKLYKISGHLAHYKDDMFPIMSRDDDEFVLRPMNCPEHMII 282

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++S + SYR+LP    +I   FR E      G+ RSR F   D++ F  T E        
Sbjct: 283 YKSQLHSYRDLPIRIAEIANDFRFEASGALTGIERSRAFTQNDSHIF-CTEEQIASEIKA 341

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L ++    L     R                  D   T+ +   D +     SE 
Sbjct: 342 VTELILDVYKDFNLNQFEFRLSLR--------------DKENTEKYFGNDDLWERSESEL 387

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +   +  +N    +     A      + ++  +L  +  +S   ++    +    ++ L
Sbjct: 388 REV--LKEMNVPYYEAEGEAAFYGPKIDVQVRSALGHDVTLSTIQLD----YQLPERFEL 441

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              A       K   V +    +G++    A +     G   I P  +AP +  +I +  
Sbjct: 442 EYVA---NGGEKKRPVVIHRAILGSIDRFVAFLLEETKG---ILPLWLAPRQAVVIPVSP 495

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   +  +K+   L K+G     DD  E++G +   A     P++V+VG   + ++ +
Sbjct: 496 --EAHGEYAKKVVEELRKIGVRTELDDRNEKLGYRIREAQTNKLPIEVVVGDGEIENNGI 553

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++   +     MSLEE +          R
Sbjct: 554 TLRRYGSRQETKMSLEEFLAAIKVEIDEKR 583


>gi|281411733|ref|YP_003345812.1| prolyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281372836|gb|ADA66398.1| prolyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 577

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 156/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEQFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V   +  
Sbjct: 181 YSRIMERLGVRYMIIEAETGTIGGNASHEFVVPAKIGETNVLFCEKC 227



 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 3/195 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSL 296
            ++     +             D+      D  P       + +GIE+GHIF  GTKYS 
Sbjct: 359 MEEDTHYVNANHPRDFKVDEWYDLRTVVEGDPCPVCGEPLKATKGIELGHIFKLGTKYSE 418

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M A F   +G+     MG YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  
Sbjct: 419 AMKAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDILNM 478

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D   +   E IY  LS+ G +V  DD     G +F  ADL+GFP+++ VG + + +  V
Sbjct: 479 NDAEQKQIGELIYQVLSEKGEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVV 537

Query: 417 EIKHRLTGIREDMSL 431
           E+K R +     +++
Sbjct: 538 ELKKRYSKELVKVNI 552


>gi|222099131|ref|YP_002533699.1| Prolyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|254782923|sp|B9KBD7|SYP_THENN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221571521|gb|ACM22333.1| Prolyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 577

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 154/227 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  + + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKQLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW  SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKRSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELRSYRQLPLVVYQVANKYRDEIRPRFGLLRAREFIMKDAYSFHSSWESLDETYELFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  RLG+K + + AE+G IGG+ SHEF+V A  GET V   +  
Sbjct: 181 YSRIMERLGVKYMVIEAETGAIGGNASHEFVVPAKIGETNVLYCEKC 227



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 10/209 (4%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                       D+      D  P       + +GIE+GHIF  GTKYS  M A F   +
Sbjct: 369 NHPRDFKVDEWCDLRTVVEGDPCPVCGEPLRATKGIELGHIFKLGTKYSEAMEAYFMDEN 428

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+     MG YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  +D   +   E
Sbjct: 429 GEMKPFIMGCYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVIVDILNMNDPDQKRVGE 488

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY  L + G +V  DD     G +F  ADL+GFP+++ VG + + D  +E+K R +   
Sbjct: 489 EIYRALLEKGEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKDGVIELKKRYSKEL 547

Query: 427 EDMSLE-------EVINYASHRFSNNRPV 448
             +S++       E +N     +     +
Sbjct: 548 VKVSIQNGLGSLFEALNRMKAEYDPREAI 576


>gi|291299890|ref|YP_003511168.1| threonyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290569110|gb|ADD42075.1| threonyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 668

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 147/444 (33%), Gaps = 37/444 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L +    +   G+  + P G      + + +R+ Q  
Sbjct: 251 KEHLRMLEEAAKRDHRKLGAQLDLFS-FPDELGSGLPVFHPKGGIIRQEMESYLRQRQKD 309

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +   +L++ SG    Y   M    +           +  +   I+RS  +
Sbjct: 310 AGYELVNTPHITKENLFLTSGHLPYYADSMFPPMEFEGAEYYLKSMNCPMHNLIYRSRGR 369

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +    +R E      G+ R R   M DA+ +  T E        +    L
Sbjct: 370 SYRELPLRLSEFGSVYRYEKSGVVHGLTRVRGLTMDDAHIY-CTEEQRDEELKSLLKFVL 428

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +         +     D  ET    +++     +P         
Sbjct: 429 ELLRDYGLDDFYLELSTRGDSDKFIGDPKDWEDATETLRRVAEESGLELVPDPGGA---- 484

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + +  D++    ++S   I+      F  +YS       
Sbjct: 485 --------------AFYGPKISVQAKDAIGRTWQMSTIQIDFNQPARFELEYSAA----- 525

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG +   V +     G++     V+   + G    W   +AP +   I I+  +   
Sbjct: 526 ---DGTRKQPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQAVGIPIRDEN--- 576

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               ++  A+L   G     D   +++  +   A L   P  V+ G        V  ++R
Sbjct: 577 VPYLDEFVAKLRAEGIRAEVDTSDDRMQKKVRNAQLQKIPFMVLAGDTDQEAGTVSFRYR 636

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  + LEE + + +    + 
Sbjct: 637 DGSQRNGVPLEEAVAHVTDVVRSR 660


>gi|257055068|ref|YP_003132900.1| prolyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256584940|gb|ACU96073.1| prolyl-tRNA synthetase, family II [Saccharomonospora viridis DSM
           43017]
          Length = 586

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 104/223 (46%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G YSWLPLG + L NV AI+REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGGYSWLPLGLRVLRNVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQEIQFPALLPKEPYETTGRWTEYGPSLFRLVDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG   SY     +Y
Sbjct: 124 YSSYKDYPVILYQIQTKYRDEARPRAGILRGREFIMKDSYSFDLDDEGLARSYELHRNAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           LRIF RLGL  + + A SG +GG  S EF+ +A+TGE     S
Sbjct: 184 LRIFDRLGLDYVVVAATSGAMGGSASEEFLAVAETGEDTYVRS 226



 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 2/174 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                  V+ARGIE+GHIF  G KY+        G D K   + MGSYGIG  RVVAA+ 
Sbjct: 410 PDGRGTLVTARGIEIGHIFQLGRKYTDAFEVDALGPDSKPIRITMGSYGIGVSRVVAAIA 469

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD  G++WP SVAP  + ++ I   D    +  E++ A+L++ G  V  DD     G
Sbjct: 470 EQHHDELGLVWPRSVAPADVHVV-IAGKDDAVTEGGERLAAQLAERGVRVLLDDRKATPG 528

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +FA A+L+G P  V+VG + ++   VE+K R TG R +++++  + +     S
Sbjct: 529 VKFADAELIGVPTIVVVG-RGLAKGVVEVKDRATGERTEVAVDSAVGHLVDLVS 581


>gi|308805643|ref|XP_003080133.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058593|emb|CAL54300.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 625

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 151/439 (34%), Gaps = 43/439 (9%)

Query: 8   LPILQENPRDAEIASHK---LMLRTGMIHQHSKG--IYSWLPLGQKALDNVNAIIREEQN 62
           L    E   +A+   H+     L    + Q S G  +  W P G +    +    ++   
Sbjct: 213 LKAYTEFKEEAKRRDHRTIGKDLNLFSLQQDSAGGGLVFWHPKGAQMRHMIETYWKDLHL 272

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +   +LW  SG  D Y + M +     ++     P +      +++   
Sbjct: 273 ARGYELLYSPHVARQELWQTSGHSDFYSENMYQPIKVEEEMYQLKPMNCPFHIVVYQDGY 332

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY++LP  + ++   +R E      G+ R R F   DA+ F L P+       ++    
Sbjct: 333 YSYKDLPIRWAELGTVYRYERSGTMHGLFRVRGFTQDDAHIFCL-PDQITSEIKRVLDLT 391

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I    G     +   + P            A+         K +              
Sbjct: 392 EEILSTFGFTDFEVNLSTRPEKSVGEDAIWTTAENALRDALGEKGWDYIVDDGGG----- 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D++    + S   ++    F    ++       
Sbjct: 447 ---------------AFYGPKIDIKILDAIGRKWQCSTVQLD----FNLPERF----DLN 483

Query: 302 FKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D  K   + +     G++     ++  ++ G+  +W   +AP ++ L+ +      
Sbjct: 484 YIDRDNNKQRPIMIHRAIFGSLERFFGILTENYAGEFPLW---LAPVQVRLLPVT---DE 537

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E + A+L + GC V     G+++      A+    P+  +VG    +++ + ++ 
Sbjct: 538 VSDYTEGVAAKLREAGCRVEI-CTGQRLAKLVRTAEKAKIPVMAVVGRDEAANNTLAVRT 596

Query: 421 RLTGIREDMSLEEVINYAS 439
              G    +S++EV++  +
Sbjct: 597 YKDGDVGSLSVDEVLSRIT 615


>gi|313816766|gb|EFS54480.1| prolyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
          Length = 581

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 145/244 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREAPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKALPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|298491630|ref|YP_003721807.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233548|gb|ADI64684.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 606

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 167/451 (37%), Gaps = 48/451 (10%)

Query: 8   LPILQENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   +    +A    H+ + +  G+         G+  W P G      +   +++EQ +
Sbjct: 186 LAEYKRRKAEALRRDHRKLGKELGLFIFADPVGPGLPLWTPKGTLLRTILEDFLKKEQLK 245

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------KAMIYGPTHEEVMTDI 117
            G + +  P +   DL+  SG +  Y +++  L   +       +  +  P +      I
Sbjct: 246 RGYLTVVTPHIARVDLFKTSGHWQKYKEDIFPLMAEDAEAAAIEQGFVLKPMNCPFHIQI 305

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++  ++SYR LP    +    +R E     G + R R F + D++ F +TPE   + +  
Sbjct: 306 YKGELRSYRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDNEFLS 364

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F  L LK+   R                  D    +     +  D    +  
Sbjct: 365 VVDLILTVFRSLQLKNFKARLSFR--------------DPASDKYIGGDEVWDKSEGAIR 410

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                +   +       A Y    D       D          R  ++G +      Y+L
Sbjct: 411 RAVQQLGMDHFEGIGEAAFYGPKLDFIFSDALD----------REWQLGTV---QVDYNL 457

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +   DG +   V +     G++  +  ++   + G   +W   +AP +I L+ 
Sbjct: 458 PERFDLEYVAEDGARKRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPVQIRLLP 514

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +   D  +++ A++  +G     D  GE++G     A+    P+  +VG K V  
Sbjct: 515 VG---EAQIDFTKEVVAKMLALGIRAEVDLSGERLGKLIRNAEKDKIPVMAVVGVKEVET 571

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + + I+ R +G    +S+++V+       +N
Sbjct: 572 NSLSIRTRASGELGVISVDQVVGKIQGAINN 602


>gi|254431853|ref|ZP_05045556.1| threonyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197626306|gb|EDY38865.1| threonyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 575

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 146/430 (33%), Gaps = 38/430 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD       L L + +  +   G+  W P G +    +    RE     G   
Sbjct: 161 RQEEARRRDHRRLGTDLDLFS-IEDEAGAGLVFWHPRGARMRLEIENFWREAHFAAGYEL 219

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW  SG  D Y + M      +++     P +       + S ++SYR L
Sbjct: 220 LYTPHVADIGLWKTSGHLDFYSESMFGPMQVDEREYQLKPMNCPFHVLTYASTLRSYREL 279

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + ++   +R E      G+MR R F   DA+ F L PE        +     RI  R
Sbjct: 280 PIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PEQISDEILAILDLTERILSR 338

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
              +S  +   + P           LA  G  +    K +                    
Sbjct: 339 FDFRSYEINLSTRPEKSIGEDAVWQLATQGLIEALDRKGWAYKVDEGGG----------- 387

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + S   ++    F    ++       +  ADG
Sbjct: 388 ---------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERF----DLHYVAADG 430

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            +   + +     G++     ++  ++ G    W   +AP +I L+ +       R   E
Sbjct: 431 SRQRPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT---DEVRPYAE 484

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++  +L   G     D  G+++G      + +  P+  ++G+K      V ++ R  G  
Sbjct: 485 ELLGQLKGAGVRASVDHSGDRLGKLIRNGEQMKIPVLGVIGAKEAETGSVSLRSRRDGDL 544

Query: 427 EDMSLEEVIN 436
             ++   ++ 
Sbjct: 545 GCVAASTLLE 554


>gi|220928798|ref|YP_002505707.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999126|gb|ACL75727.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 645

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 161/447 (36%), Gaps = 35/447 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T  + +  +G+   +P G + +  +   + +E+ 
Sbjct: 228 LEEYVTKLEEAKKRDHNKLGRELELFT-TVEEIGQGLPLLMPKGARIVQTLQRFVEDEEE 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
           R G +    P +  +DL+  SG +  Y   M  L D   +++ M   P        I+ +
Sbjct: 287 RRGYVLTKTPLMAKSDLYKLSGHWQHYKDGMFLLGDEEKDEEVMALRPMTCPFQFMIYNT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +  
Sbjct: 347 KLHSYRDLPIRYGETSTLFRNEASGEMHGLIRVRQFTISEGHLV-CTPEQLEDEFKGVVD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +   LG            I  D+++ F    D    + +   +     +  +    
Sbjct: 406 LIKFMMETLG------------IQDDVTYRFS-KWDPKNKEKYIGNEEDWENVQDQMRTI 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + ++   ++     A      + +  +   +   +    ++               +
Sbjct: 453 LDHLKID--YKEAEGEAAFYGPKLDIQCKNVHGKEDTIITVQVDFALAERL--------N 502

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   +  K H   +    IG      A++   + G    W   + P +  ++ +    
Sbjct: 503 MVYVDKNNEKKHPYIIHRTSIGCYERTLAILIEKYAGAFPTW---LCPVQAKILPLVDK- 558

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+   L   G  V  D   E+IG +   A +   P  +++G K + ++ V +
Sbjct: 559 --HHDFAQKVAQMLRDKGVKVEVDTRNEKIGYKIREAQMEKIPYMLVIGDKEMENNAVSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G    M  E+ ++         
Sbjct: 617 RSRKDGDLGAMPAEQFVDRIVEEIRTR 643


>gi|15618715|ref|NP_225001.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836339|ref|NP_300863.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752234|ref|NP_445602.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242166|ref|NP_877107.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|8928382|sp|Q9Z7A0|SYT_CHLPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4377117|gb|AAD18944.1| Threonyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189978|gb|AAF38837.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8979180|dbj|BAA99014.1| threonyl tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|33236677|gb|AAP98764.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 635

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 152/438 (34%), Gaps = 40/438 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD  +   KL L +    + S G+  + P G    D +    ++     G  E
Sbjct: 229 QIEEAKKRDHRVLGAKLDLFSQ--QESSPGMPFFHPRGMIVWDALIRYWKQLHTAAGYKE 286

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P L +  LW  SG +D+Y   M  L   +D+     P +       +++ + SY+  
Sbjct: 287 ILTPQLMNRQLWEVSGHWDNYKANMYTLQ-IDDEDYAIKPMNCPGCMLYYKTRLHSYKEF 345

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++    R E      G+MR R F   DA+ F LTPE  +     +      ++  
Sbjct: 346 PLRVAEVGHVHRQEASGALSGLMRVRAFHQDDAHVF-LTPEQVEEETLNILQLVSTLYGT 404

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL+   +   + P                E          +    + N       +   
Sbjct: 405 FGLEY-HLELSTRP----------------EKDTIGDDSLWELATDALNRALVQSGTPFI 447

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    D+H           K    R  + G I              +  A G
Sbjct: 448 VRPGEGAFYGPKIDIH----------VKDAIQRTWQCGTI-QLDMFLPERFELEYTTAQG 496

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K   V +     G++     ++  +  G+  +W   ++P ++ +I +           +
Sbjct: 497 TKSVPVMLHRALFGSIERFLGILIENFKGRFPLW---LSPEQVRIITVA---DRHIPRAK 550

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++     ++G  V  DD  E +  +   A  +     + +G   ++++ + ++ R   + 
Sbjct: 551 ELEEAWKRLGLVVTLDDSSESVSKKIRNAQNMQVNYMITLGDHEINENVLAVRTRDNRVI 610

Query: 427 EDMSLEEVINYASHRFSN 444
            D+S+E  +N      ++
Sbjct: 611 NDVSVERFLNTILEEKNS 628


>gi|299143351|ref|ZP_07036431.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517836|gb|EFI41575.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 584

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 109/234 (46%), Positives = 151/234 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK ++P L+E P DAEIASH+L+LR   I + + GIY++LPLG K +  V  I+REE
Sbjct: 1   MKLSKLYMPTLREVPADAEIASHQLLLRGAFIRKSASGIYTYLPLGYKVIKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W  S R+D +G EM +L DRND+    GPT EE  T + + 
Sbjct: 61  MDRAGSQEILMSAIQPKEIWEASDRWDRFGPEMFKLRDRNDREFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPRFG+ R+REF MKDAYSFD TPE  + SY +M+ +
Sbjct: 121 EVKSYKQLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYSFDTTPETMQVSYMEMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y +IF RLGL    +  ++G +GG  SHEFI L++TGE  +  S          
Sbjct: 181 YEKIFDRLGLDYKIVEGDNGAMGGKKSHEFIALSETGEGVIAYSPTGKYAATQE 234



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 133/293 (45%), Gaps = 21/293 (7%)

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE  M     + +TPE      N   +  +                +GPIG  LS +  +
Sbjct: 297 RELNMAKLEGYLMTPEHEIEMMNDEQILSIN----------SAPGYTGPIG--LSEDVRL 344

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           + D   TQ        +  + +    +    +      +             + +  +  
Sbjct: 345 IFDKSITQ------MDNLVVGANKVGYHIKNANYDRDFKGEICEDLLEVREGDIIEGTNE 398

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K    RGIEVG+IF  GTKYS  ++AT+   +GK+  + MGSYG+G  R V A++E +
Sbjct: 399 KFKFA--RGIEVGNIFQLGTKYSEALNATYLDENGKEQLIWMGSYGVGVTRTVTAIVEQN 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           +D  GIIWP SVAP+ + +  +   D++  +  EKIY  L ++G +V  DD  E+ G +F
Sbjct: 457 YDENGIIWPMSVAPYHVIVTVVNPKDEIQLELGEKIYNSLVELGHEVLLDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              DL+G P+++ VG +   +  VE   R    + ++  +E I   S    N+
Sbjct: 517 KDRDLIGIPIRITVGKRAAEE-IVEYSLRRETEKTEIFAKEAIEKVSGEIFNS 568


>gi|27467857|ref|NP_764494.1| prolyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57866745|ref|YP_188412.1| prolyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251810694|ref|ZP_04825167.1| prolyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876305|ref|ZP_06285172.1| proline--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|293366773|ref|ZP_06613449.1| proline-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|81175026|sp|Q8CST7|SYP_STAES RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175027|sp|Q5HPS8|SYP_STAEQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27315402|gb|AAO04536.1|AE016747_33 proline-tRNA ligase [Staphylococcus epidermidis ATCC 12228]
 gi|57637403|gb|AAW54191.1| prolyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805854|gb|EES58511.1| prolyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295330|gb|EFA87857.1| proline--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|291319074|gb|EFE59444.1| proline-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736329|gb|EGG72601.1| proline--tRNA ligase [Staphylococcus epidermidis VCU028]
 gi|329736632|gb|EGG72898.1| proline--tRNA ligase [Staphylococcus epidermidis VCU045]
          Length = 567

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S +     
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNESDYAA 231



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF I LI I       R   +++Y +L     DV +DD  E+ G +F  +DL+G 
Sbjct: 464 PKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMDS-YDVLYDDRKERAGVKFNDSDLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           P++V+VG +   +  VE+K R+ G+ E++ ++E+  Y    F N +
Sbjct: 523 PVRVVVGKR-AEEGIVEVKQRINGLSEEVQIDELEYYLQELFKNIK 567


>gi|329724323|gb|EGG60835.1| proline--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 567

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S +     
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNESDYAA 231



 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF I LI I       R   +++Y +L     DV +DD  E+ G +F  +DL+G 
Sbjct: 464 PKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMDS-YDVLYDDRKERAGVKFNDSDLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           P++V+VG +   +  VE+K R+ G+ E++ ++E+  Y    F N +
Sbjct: 523 PVRVVVGKR-AEEGIVEVKQRINGLSEEVQIDELEYYLQDLFKNIK 567


>gi|313819523|gb|EFS57237.1| prolyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
          Length = 581

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 146/244 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKALPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|148273336|ref|YP_001222897.1| prolyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166980116|sp|A5CSZ7|SYP_CLAM3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147831266|emb|CAN02222.1| proS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 590

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 104/235 (44%), Positives = 141/235 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ASH+L++R G I + + GI++WLPLG +  + V AI+REE 
Sbjct: 4   RLSKLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGIFAWLPLGLRVKNKVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R GA E+  P L  A+ +  +GRYD YG  M RL DR    M+  PTHEE    + +  
Sbjct: 64  ERIGAQEVHFPALLPAEPYQATGRYDEYGPGMFRLEDRKRAPMVLAPTHEEFFALLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLSIYQIQDKYRDEARPRAGILRGREFTMKDAYSFDHTDAGLAVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            RIF RLGL+ + + A++G +GG  S EF+     GE     S       + +  
Sbjct: 184 ERIFQRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGEDTFVRSPGGYAANVEAFT 238



 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 5/175 (2%)

Query: 264 NEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           + +  D  P+        RG E+GH+F  G KY+  +       +GK   V MGSYGIG 
Sbjct: 411 DVRDGDPAPDGSGPITAGRGTEIGHVFELGRKYAEALGLKVLDENGKLVTVTMGSYGIGI 470

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +A V E++ DG+G++WP S++PF + ++     D++   A E++   L   G DV +
Sbjct: 471 TRNLALVAEATQDGRGLLWPASISPFDVHVVMTGKGDEIAS-ASEELVDALDAAGLDVLF 529

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           DD  +   G +F  A+L+G P  VIVG +   D   E+  R T  R  ++L +V+
Sbjct: 530 DDRPKVSPGVKFGDAELIGVPTIVIVG-RGAVDGMAELWDRRTNERTPVALADVV 583


>gi|301095894|ref|XP_002897046.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262108475|gb|EEY66527.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 725

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 152/454 (33%), Gaps = 64/454 (14%)

Query: 17  DAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+L+ R     M H  S G   +LP G +  + +   IR E  R G  E+  P 
Sbjct: 304 EAKKRDHRLIGRAQQLFMFHPLSPGSSFFLPHGTRVFNTLADFIRREYRRRGYDEVITPL 363

Query: 74  LQSADLWVESGRYDSYGKEMLRLA-------------------DRNDKAMIYGPTHEEVM 114
           +   +LW  SG   +Y  +M  ++                   +         P +    
Sbjct: 364 IFKKELWETSGHLQNYHDDMFMVSQGIATDDACEEHGHTHSHGEEEYDQFGLKPMNCPGH 423

Query: 115 TDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
             +FR   K SYR LP          R+E      G+ R R F   DA+ F  T    + 
Sbjct: 424 CLLFREAKKYSYRELPVRLADFSALHRNEASGALTGLTRVRRFHQDDAHIF-CTAAQVQS 482

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
             +        ++     K   +R  + P       E    A+                 
Sbjct: 483 EMSLALDFIKHVYGIFDFKF-NLRLSTRPEKYMGDLELWDDAEDQLRLALDDFGQPWTVN 541

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             +                     A      +  + D+L    +     ++    F    
Sbjct: 542 EGDG--------------------AFYGPKIDIVVTDALQRQHQCGTIQLD----FQLPI 577

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +       + GADG+ H  + +    +G++  + A++     GK   WP  ++P ++++
Sbjct: 578 NF----ELEYDGADGEAHTPIIIHRAVLGSIERMMAILIEHTGGK---WPLWLSPRQVAV 630

Query: 352 INIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + I    +  R+   ++ + L      G  V   D  + +  +   A + G+   ++VG 
Sbjct: 631 LPIA---EAHREYAYEVASTLQNATARGLYVDVQDGSKTLNKRIREAQVAGYNYILVVGD 687

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           K  +  +V I+ R   +     L + I+  +   
Sbjct: 688 KEQASGEVNIRTRDNQVHGAKPLGDFIDDITAAI 721


>gi|254413846|ref|ZP_05027615.1| prolyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196179443|gb|EDX74438.1| prolyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 596

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 111/223 (49%), Positives = 147/223 (65%), Gaps = 3/223 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             L  L+E+P +AEI SHKL++R G I +   GIY++LPL  + L  V+ I+REE N TG
Sbjct: 1   MLLVTLREDPAEAEIPSHKLLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREEMNATG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A E  +P LQ +DLW ESGR+D+Y K    M  L+DR ++ +  GPTHEEV+T I R  I
Sbjct: 61  AQECLLPQLQPSDLWRESGRWDTYTKAEGIMFALSDRQNRELGLGPTHEEVITTIAREMI 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M  +Y 
Sbjct: 121 RSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHVNEDSLKKTYQDMDQAYR 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            +  R GL    + A+SG IGG  S EF+VLAD GE ++  ++
Sbjct: 181 NMISRCGLAFRAVEADSGAIGGSGSQEFMVLADIGEDEILYTE 223



 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 1/213 (0%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           F   +  T++  + +                           P     SARGIE GHIF 
Sbjct: 380 FVTGANETNYHIVGANWGEPFPLPKQVVDLRTAKAGDRAIHDPSQILHSARGIEAGHIFQ 439

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  M AT+    G+++ + MG YG+G  R+  A +E S+D  GIIW  ++AP+  
Sbjct: 440 LGTKYSKAMGATYTNEAGEENPLYMGCYGVGVSRLAQAAVEQSYDKDGIIWAPAIAPYHA 499

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +      D    +A E +Y +L + G +   DD  E+ G +F  ADL+G P +++ G +
Sbjct: 500 IITVPNISDTKQMEAAETLYQQLWQAGVETLLDDRNERAGVKFKDADLIGIPYRIVTG-R 558

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +   KVE+  R T   +++ L++V++      
Sbjct: 559 SLKQGKVEVAVRATHQSQELPLDQVVSTLKQWL 591


>gi|284992392|ref|YP_003410946.1| prolyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284065637|gb|ADB76575.1| prolyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 582

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 96/241 (39%), Positives = 138/241 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P DAE+ SH+L++R G I + + G ++WLPLG +   NV  ++REE
Sbjct: 3   LRMSTLFLRTLRDDPADAEVPSHRLLVRAGYIRRAAPGGFTWLPLGYRVFRNVERVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MDRMGAQEVHFPALLPREPYEATNRWTEYGPNLFRLQDRRGADFLLGPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G+ R REF MKD+YSFD+   G   SY     +
Sbjct: 123 LYSSYKDLPLSLYQIQTKYRDEARPRAGLFRGREFTMKDSYSFDVDDAGLDKSYAAHRDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R+F RLGL  + + A SG +GG  S EF+     GE     S       + +  T   
Sbjct: 183 YIRVFDRLGLDYVIVSAMSGAMGGSRSEEFLHPTPIGEDTFVRSSGGYAANVEAVTTVVP 242

Query: 241 D 241
           D
Sbjct: 243 D 243



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GHIF  G KY+  +       +GK   V MGSYGIG  R VAA+ ES+HD  G++
Sbjct: 419 RGVEMGHIFQLGRKYAEALDLKVLDENGKLVTVTMGSYGIGVSRAVAAIAESTHDELGLV 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP  + ++     D    +  E +   L   G  V +DD  +   G +F  A+LL
Sbjct: 479 WPREVAPADVHVVA-TGKDAAVFETAEALAQELLAAGLTVLYDDRPKVSPGVKFKDAELL 537

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P  V VG + +++  +E++ R TG RE++ + EV    
Sbjct: 538 GMPTIVTVG-RGLAEGVLELRDRATGEREEVPVGEVAARV 576


>gi|319401447|gb|EFV89657.1| prolyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 567

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHFDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S +     
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNESDYAA 231



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 121/252 (48%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           + A  G IG     +  + AD         +D  +F + +    +  I          T 
Sbjct: 326 VDANPGSIGPIFEKDIKIYADN------YLQDLNNFVVGANEDHYHYINVNIGRDFDVTE 379

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                     E L D     +     GIEVG +F  GTKYS  M+ATF    GK   + M
Sbjct: 380 YGDFRFITQGEMLSDGSGVAQFAE--GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIM 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R ++A++E ++D  GIIWP SV PF I LI I       R   +++Y +L  
Sbjct: 438 GCYGIGVSRTLSAIVEQNNDENGIIWPKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMD 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              DV +DD  E+ G +F  +DL+G P++V+VG +   +  VE+K R+ G+ E++ ++E+
Sbjct: 498 S-YDVLYDDRKERAGVKFNDSDLIGLPVRVVVGKR-AEEGIVEVKQRINGLSEEVQVDEL 555

Query: 435 INYASHRFSNNR 446
             Y    F N +
Sbjct: 556 ETYLQELFKNIK 567


>gi|270308068|ref|YP_003330126.1| threonyl-tRNA synthetase (thrS) [Dehalococcoides sp. VS]
 gi|270153960|gb|ACZ61798.1| threonyl-tRNA synthetase (thrS) [Dehalococcoides sp. VS]
          Length = 582

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 157/442 (35%), Gaps = 40/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E   RD      +L L + +  +   G+ +WLP G      +    ++E  + G
Sbjct: 174 YLNMIEEAAKRDHRKLGKELELFS-LHQEIGGGLVNWLPNGATIRHLIEEFWKKEHLKRG 232

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +SY
Sbjct: 233 YNLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSY 292

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+ R R F   DA+ F L  E  +    K+      +
Sbjct: 293 KELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCL-YEQLEKEVVKVLDLAKFM 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P            A     +   +        P E   +   I 
Sbjct: 352 IDTFGFAKYKVMLSTRPEKYVGELAKWEYATDILAKALEANGISYQVDPGEGVFYGPKI- 410

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                              + K  D+L    +     ++    F    ++      +  G
Sbjct: 411 -------------------DIKFEDALGRAWQGPTIQVD----FQLPERF----EVSVVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKD  V  +    +G+M    + +   + G   +W   ++P ++ +I I        +
Sbjct: 444 EDGKDQPVAMVHRTVLGSMERFMSCLTEQYGGAFPVW---LSPKQVMIIPIA---DRHSE 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L +    V  D+  E +  +   A L   P  ++VG K +    + ++ R+ 
Sbjct: 498 FAEKLACELREEEVRVEVDNRSETMNQKIRQAQLAKIPYMLVVGDKEIETGSIALRSRI- 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G ++ M   E  +   ++    
Sbjct: 557 GSQQVMPFAEFKSMLLNKIKTK 578


>gi|27904622|ref|NP_777748.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839437|sp|P59554|SYT_BUCBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27904019|gb|AAO26853.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 643

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 146/432 (33%), Gaps = 40/432 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD    S  L L    I +   G+  W   G      +  +IR +  +    E+  P + 
Sbjct: 243 RDHRKISKILDLY--HIQEDLPGMIFWHRNGWIVFQELKKLIRVKLRKYNYQEVKTPVMM 300

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +  +W +SG  D+Y + M  +   N +  I  P +      IF   ++SYR+LP    + 
Sbjct: 301 NKKIWKDSGHLDNYKESMFMVCSSNFEYGI-KPMNCPGHVQIFNHVVRSYRDLPIRISEF 359

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R+E      G+MR R F   DA+ F    +      +        I+   G K I 
Sbjct: 360 GSCHRNEPSGALHGLMRIRNFTQDDAHIF-CREDQICSEVSNCIRMVYEIYKIFGFKKIL 418

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +R  + P     +     + D  E  +  S                 +       E    
Sbjct: 419 VRLSTRPKNRIGND---NIWDKAENDLATS-----------------LRESKIEFEYQHG 458

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQ 313
             A         LFDSL    + +   ++    F         + A +   + +    + 
Sbjct: 459 EGAFYGPKIELSLFDSLGRVWQCATIQLD----FCLPIN----LKAFYIDHNNERKVPII 510

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++     ++   + G    W   +AP ++ L N+ ++        + +Y    
Sbjct: 511 VHRAVLGSIERFIGILIEEYIGNFPTW---LAPIQVVLANVNSN---HLQYIKLLYKEFY 564

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G     D   E I  +         P  +I G K V ++ + ++ R       + ++ 
Sbjct: 565 ALGIRSEIDSRNETISYKIREHIARKIPYIIICGDKEVKNNTITLRTRSGKNFYCIDVQF 624

Query: 434 VINYASHRFSNN 445
            I+      ++ 
Sbjct: 625 FISKLCKEINSY 636


>gi|328885400|emb|CCA58639.1| Prolyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 566

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 100/230 (43%), Positives = 140/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L N+  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLSNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+++P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVTLPALLPREPYEATGRWDEYGAELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 CSSYKDLPVILYQIQNKFRDEARPRAGILRGREFLMKDSYSFDTEDEGLAQSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            R+F RLGL    + A +G +GG  S EF+  A+ GE       +     
Sbjct: 188 QRVFERLGLDYRIVAATAGAMGGSKSEEFLAPAEAGEDTFADCPNCDFAA 237



 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 6/226 (2%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR- 276
           E   + +   +            D +   ++V           DV   +  D  P+    
Sbjct: 344 EKVTYIADPRVAPGTAWITGANKDGMHAKNVVAGRDFEVEEYVDVVVVQEGDPCPKCGTG 403

Query: 277 -VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E + D 
Sbjct: 404 LKLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADE 463

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           KG+ WP  VAP  + ++   A   +  +   ++  +LS  G  V  DD  G   G +F  
Sbjct: 464 KGLCWPAEVAPADVHVV--AAGKALQTELALEVSDKLSAAGLRVLVDDRAGVSPGVKFTD 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           A+L+G P  ++ G +   +  VE+K R TG RE++++EE +   + 
Sbjct: 522 AELMGVPKILVAGRRS-GEGIVELKDRRTGDREELTVEEALTRLTA 566


>gi|302816173|ref|XP_002989766.1| hypothetical protein SELMODRAFT_447798 [Selaginella moellendorffii]
 gi|300142543|gb|EFJ09243.1| hypothetical protein SELMODRAFT_447798 [Selaginella moellendorffii]
          Length = 564

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 155/434 (35%), Gaps = 40/434 (9%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+L+ +       H+ S G   +LP G    + +   IR E  + G  E+  P 
Sbjct: 164 EAKKRDHRLLGKNQQLFFFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRGFDEVVTPN 223

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG    Y + M    +   +     P +      +F+  ++SYR LP    
Sbjct: 224 IYNMKLWEQSGHAAHYKENMFVF-EIEKQEFGLKPMNCPGHCLLFQHRVRSYRELPLRIA 282

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+EL     G+ R R F   DA+ F +                  ++   G   
Sbjct: 283 DFGVLHRNELSGALTGLTRVRRFSQDDAHIFCM-ESQVYDEVKGCLDFLDYVYTIFGFTY 341

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++  + P            A+        +          +                 
Sbjct: 342 -DLKLSTRPENFLGESSLWDRAEGALADALNAHAKPWQMNEGDG---------------- 384

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               A      + ++ D+L    + +   ++      F   YS    A        +  V
Sbjct: 385 ----AFYGPKIDIQVSDALNRKFQCATIQLDFQSPIRFKLSYSAEDEAKI------ERPV 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++  + A++   + GK   WP  ++P +  ++ I    +  +D  E++ A+L
Sbjct: 435 IIHRAILGSIERMFAILLEDNAGK---WPFWLSPRQAIVLTI---SEKFKDYAEEVRAKL 488

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSL 431
              G +V  D    ++  +   A +  +   ++VG+      +V ++ R + G R  +++
Sbjct: 489 HAAGFEVDVDVSDRKVDKKVREAQMAHYNYLLVVGAMEQEKGEVNVRTRGSKGQRGCITI 548

Query: 432 EEVINYASHRFSNN 445
           E++I       +N 
Sbjct: 549 EKLIAEFQDLVANY 562


>gi|254580109|ref|XP_002496040.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
 gi|238938931|emb|CAR27107.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
          Length = 716

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 163/440 (37%), Gaps = 43/440 (9%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A +  H+ + R     M ++ S G   WLP G +    +  +++ E  + G  E+  P 
Sbjct: 304 EASLRDHRRIGREQELFMFNEMSPGSCFWLPHGTRIYSTLVDLLKNEYRKRGYEEVITPN 363

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + ++ LW  SG +  Y + M       +      P +      +F+S  +SYR LP+   
Sbjct: 364 MYNSKLWETSGHWGHYKENMFTFEVEKEMY-GLKPMNCPGHALMFKSRERSYRELPWRVA 422

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E      G+ R R F   DA+ F  + +       ++F     I+   G + 
Sbjct: 423 DFGVIHRNEFSGALTGLTRVRRFQQDDAHIFCRS-DQIGQEIERIFDFLSFIYGVFGFEF 481

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             M   + P                  + +  K        +      +        E  
Sbjct: 482 -KMELSTRP------------------EKYVGKLETWNAAEATLEAALNKWGGK--WELN 520

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK--DH 310
            A  A      +  + D+L    + +   ++    F    +++L   +     +G+  + 
Sbjct: 521 PADGAFYGPKIDIMISDALRRWHQCATIQLD----FQLPDRFALEYKSKDNDNEGETYER 576

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++     GK   WP  ++P +I ++ +       +   +++  
Sbjct: 577 PVMIHRAILGSVERMTAILTEHFAGK---WPFWLSPRQILVVPVGVK---YQPYAQEVRD 630

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           ++   G     D  G  +  +     +L +    IVG + +++  V I++R    ++   
Sbjct: 631 KMHNAGFYADVDLSGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKN 690

Query: 428 -DMSLEEVINYASHRFSNNR 446
             +S+E V+       S+ R
Sbjct: 691 ATVSVETVLEQLKKLKSDMR 710


>gi|189200603|ref|XP_001936638.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983737|gb|EDU49225.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 768

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 153/465 (32%), Gaps = 36/465 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L  L+E   RD      +        H+ S G   +LP GQ   + + A +REE   
Sbjct: 312 QAHLKFLEEAAKRDHRKIGKE--QELFFFHEFSPGSCFFLPHGQIIYNTLQAFLREEYWN 369

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW  SG +  Y  +M    D   +     P +      IF+   +
Sbjct: 370 RGYQEVGSPNMYNSALWKISGHWQHYADDMFTF-DVEKEKWALKPMNCPGHCLIFKHRER 428

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP       +  R+E      G+ R R F   D + F  T +      + +F    
Sbjct: 429 SYRELPIRMADFGILHRNEASGALTGLTRVRRFQQDDTHVF-CTQDQITEEISALFDFLR 487

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC------------SKDFMDF 230
            ++ + G     M+  + P G     E    A+   T+               +     F
Sbjct: 488 AVYGKFGFTF-KMKLSTRPEGFLGDIETWDKAEAKLTEALNQFTAAGGSAWELNPGDGAF 546

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
             P  +    D +            +   +    E +   +   K       E GHI   
Sbjct: 547 YGPKIDITISDALKREFQCATIQLDFQLPNQFELEYMTSEVIPVKNKDQPQ-EGGHIEQK 605

Query: 291 -----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                G   ++P         G    V +     G+     A++     G    WP  ++
Sbjct: 606 KEKLEGADVTIPKKIKEP-QPGYARPVMIHRAIYGSFERFIAILTEHFAG---RWPFWLS 661

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ +I +        D  +++ A L K       D  G  +  +   A L  +   ++
Sbjct: 662 PRQVMVIPVMPG---ANDYVKEVQAELRKHRLHADIDISGNTMQKKIRTAQLALYNFIMV 718

Query: 406 VGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           VG++      V  ++R     +     + L+E +          R
Sbjct: 719 VGAEEQQARAVNWRNRDDQETQQRGVIVPLDEAVKKLVELRDERR 763


>gi|152965404|ref|YP_001361188.1| prolyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|189083501|sp|A6W7Y5|SYP_KINRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151359921|gb|ABS02924.1| prolyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 586

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 137/234 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P +AE+ASHKL++R G + + + GIY+WLPLG K L  V  ++REE
Sbjct: 3   MRMSTLFLRTLREDPVEAEVASHKLLVRAGYVRRAAPGIYTWLPLGLKVLRKVEQVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+  YG  + +L DR     +  PTHEE+ T + + 
Sbjct: 63  MDAAGAQEVHFPALLPREPYEATNRWSDYGDGIFKLKDRKGADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF MKD+YSFD+   G + SY     +
Sbjct: 123 LYSSYKDLPLSIYQIQTKYRDEARPRAGIIRGREFTMKDSYSFDVDDAGLERSYELHRQA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y+RIF RLGL  + + A SG +GG  S EF+     GE     S         +
Sbjct: 183 YVRIFERLGLDFVIVSAVSGAMGGSRSEEFLHPTAIGEDTFVRSPGGYAANAEA 236



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+ HIF  G +++  +       +GK   V MGSYG+G  R +A V E +HD KG++
Sbjct: 423 RGIEIAHIFALGRRFAQALDLKVLDENGKQVVVTMGSYGVGVTRALACVAEGNHDEKGLV 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP  + ++     D       E++   L   G +V +DD  +   G +F  A+L+
Sbjct: 483 WPRALAPADVHVVA-TGKDPEIFATAERLAGELVAQGLEVLYDDRPKVSPGVKFKDAELI 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G P  ++VG K +++  VE+K R +G  E ++L++ ++  +
Sbjct: 542 GVPTILVVG-KGLAEGLVELKDRRSGDSEQVALDDAVSRVA 581


>gi|239982632|ref|ZP_04705156.1| prolyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291454473|ref|ZP_06593863.1| prolyl-tRNA synthetase 1 [Streptomyces albus J1074]
 gi|291357422|gb|EFE84324.1| prolyl-tRNA synthetase 1 [Streptomyces albus J1074]
          Length = 564

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/230 (43%), Positives = 140/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETISHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISHIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG + SY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLEESYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +IF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 186 QKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAPAGEDTFADCPNCSYAA 235



 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 7/230 (3%)

Query: 215 DTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             G  +V + +   +           +D     ++V           DV   +  D  P 
Sbjct: 338 PQGLDKVRYIADPRVAPGTAWVTGANEDGKHARNVVAGRDFEVDDYLDVVVVEEGDPCPN 397

Query: 274 NK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R IE+GHIF  G KY+        G  GK   V MGSYGIG  R VAA+ E 
Sbjct: 398 CGNGLKLDRAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVSRAVAALAEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + DG+G+ WP  VAP  + ++   A   +  +   ++  +L+  G  V  DD  G   G 
Sbjct: 458 TADGQGLCWPAEVAPADVHVV--AAGKALQTELALEVSEKLNAAGVRVLVDDRAGVSPGV 515

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +F  A+L+G P  ++ G +  +D  VE+K R TG RE++ + E +   + 
Sbjct: 516 KFTDAELIGVPKILVAGRRS-ADGIVELKDRRTGEREELPVAEAVARLTA 564


>gi|242242546|ref|ZP_04796991.1| prolyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233973|gb|EES36285.1| prolyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 567

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S +     
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNESDYAA 231



 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           + A  G IG     +  + AD         +D  +F + +    +  I          T 
Sbjct: 326 VDANPGSIGPIFEKDIKIYADN------YLQDLNNFVVGANEDHYHYINVNIGRDFDVTE 379

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                     E L D     +     GIEVG +F  GTKYS  M+ATF    GK   + M
Sbjct: 380 YGDFRFITQGEMLSDGSGVAQFAE--GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIM 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R ++A++E ++D  GIIWP SV PF I LI I    +  R   +++Y +L  
Sbjct: 438 GCYGIGVSRTLSAIVEQNNDENGIIWPKSVTPFDIHLITINPKKEDQRTLGDQLYQKLMD 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              D+ +DD  E+ G +F  +DL+G P++V+VG +   +  VE+K R  G+ E++ ++E+
Sbjct: 498 S-YDILYDDRKERAGVKFNDSDLIGLPVRVVVGKR-AEEGIVEVKQRFNGLSEEVQIDEL 555

Query: 435 INYASHRFSNNR 446
             Y    F N +
Sbjct: 556 ETYLQDLFKNIK 567


>gi|254411303|ref|ZP_05025080.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196181804|gb|EDX76791.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 609

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 162/451 (35%), Gaps = 47/451 (10%)

Query: 8   LPILQENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   +   ++A    H+ + +  G+         G+  W P G      +   +++EQ +
Sbjct: 190 LTEYKRRKQEALKRDHRKLGKDLGLFILSDPVGPGLPLWTPKGTILRSTLEDFLKQEQIK 249

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P +   +L+  SG +  Y +++  +   ++    +    +      I++  +
Sbjct: 250 RGYQPVVTPHIGRVELFKTSGHWQKYKEDLFPMMGESEAEGFVLKAMNCPFHVQIYKHEL 309

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +    +R E      G+ R R F   DA+ F +TPE     + ++    
Sbjct: 310 RSYRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLF-VTPEQLDDEFLRVVDLT 368

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +F+ LGL+    R                  D  + +   S +  +    +     + 
Sbjct: 369 LSVFNTLGLQDFKARLSFR--------------DPSQDKYIGSDEAWNKSENAIRRAVET 414

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
           +   +       A Y    D       D          R  ++G +      Y+LP   +
Sbjct: 415 LGMGHFEGIGEAAFYGPKLDFMFHDALD----------REWQLGTV---QVDYNLPERFN 461

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   DG     V +     G++  +  ++   + G    W   +AP +  L+ +    
Sbjct: 462 LEYVAEDGTRQRPVMIHRAPFGSLERLIGILIEEYAGDFPFW---LAPVQARLLPV---S 515

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +++  ++  VG  V  D  G+++       +    P+  +VG+K V  + + +
Sbjct: 516 DEQLTFAKEVAQKMRLVGVRVEVDTSGDRLPKMIRNGEKAKIPVMAVVGAKEVESNSLSV 575

Query: 419 KHRLTG----IREDMSLEEVINYASHRFSNN 445
           + R  G        + + +V+       +N 
Sbjct: 576 RIREAGKQSQDLGAIPVAQVLERMESAIANR 606


>gi|282898730|ref|ZP_06306717.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196257|gb|EFA71167.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
          Length = 610

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 167/445 (37%), Gaps = 45/445 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 198 EEALRRDHRKIGKELGLFI-FSDPVGPGLPLWTPKGTLLRSILEDFLKKEQLKRGYLPVV 256

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  +   N+++       +  P +      I++S ++S
Sbjct: 257 TPHIARVDLFKTSGHWQKYKEDMFPMMAENEESKALDQGFVLKPMNCPFHIQIYKSELRS 316

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E      G+ R R F + D++ F +TPE     +  +    L 
Sbjct: 317 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDEEFLNVVDLILT 375

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F RL LK+   R        D       + D  E  +  +                  +
Sbjct: 376 VFRRLQLKNFKARLSFRDPTSDKYIGGDEVWDKAEGAIRRA------------------V 417

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
               +        AA      + +F        V  R  ++G +      Y+LP      
Sbjct: 418 QQLGMDHFEGIGEAAFYGPKLDFIF------SDVLEREWQLGTV---QVDYNLPERFDLE 468

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG +   V +     G++  +  ++   + G   +W   +AP +I L+ +    + 
Sbjct: 469 YVAEDGSRKRPVMIHRAPFGSLERLIGILIEEYAGDFPLW---LAPIQIRLLPVG---EQ 522

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++  +++++G     D  G+++       +    P+  +VG+K V  + + I+ 
Sbjct: 523 QIEFTKEVAGKMTELGIRAQADLSGDRLAKLIRNGEKDKIPVMAVVGAKEVESNSLSIRT 582

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G    + +E+V+        N 
Sbjct: 583 RASGELGVIPVEKVVEKMQDSIINY 607


>gi|314933442|ref|ZP_07840807.1| proline--tRNA ligase [Staphylococcus caprae C87]
 gi|313653592|gb|EFS17349.1| proline--tRNA ligase [Staphylococcus caprae C87]
          Length = 567

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEESLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +     
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNESDYAA 231



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 124/252 (49%), Gaps = 10/252 (3%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           + A  G IG   + E  + AD         KD  +  I +    +  + +          
Sbjct: 326 VGANPGSIGPIHNKEIKIYADN------YVKDLNNLVIGANEDGYHYVNANVERDFNIDE 379

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                  +  E L D     K   A GIEVG +F  GTKYS  M+ATF    GK   + M
Sbjct: 380 YGDFRFILEGEMLSDGSG--KAQFAEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIM 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R ++A++E ++D  GIIWP SV PF + LI I       R+  +++YA+L+ 
Sbjct: 438 GCYGIGISRTLSAIVEQNNDENGIIWPKSVTPFDLHLITINPKKDDQRELGDQLYAQLND 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              DV +DD  E+ G +F  ADL+G PL+V+VG +   +  VE+K RL G  E++ + ++
Sbjct: 498 K-FDVLYDDRKERAGVKFNDADLIGLPLRVVVGKR-AEEGVVEVKQRLNGESEEIHVNDL 555

Query: 435 INYASHRFSNNR 446
            NY    +   +
Sbjct: 556 ENYLKDLYDKLK 567


>gi|223044242|ref|ZP_03614279.1| prolyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442392|gb|EEE48500.1| prolyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 567

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEESLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +     
Sbjct: 181 YSKIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNESDYAA 231



 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 218 ETQVFCSKDFMDFP--IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           E +++      D    +   N D    ++ N   +     Y     +   ++  S    K
Sbjct: 340 EIKIYADNYVKDLNNLVIGANEDGYHYVNANVERDFNIDEYGDFRFILEGEML-SDGSGK 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D 
Sbjct: 399 AQFAEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNNDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP SV PF + LI I       R+  +++Y +L+    D+ +DD  E+ G +F  A
Sbjct: 459 NGIIWPKSVTPFDLHLITINPKKDDQRELGDQLYDQLNGK-FDILYDDRKERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G P++V+VG +   +  VE+K RL+G  E++ + ++ NY    + N +
Sbjct: 518 DLIGLPMRVVVGKR-AEEGIVEVKQRLSGESEEIHVNDLENYLKDLYDNLK 567


>gi|86607055|ref|YP_475818.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|86555597|gb|ABD00555.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 603

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 162/448 (36%), Gaps = 46/448 (10%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E  R D      +L L      +   G+  W P G      +   +++EQ +
Sbjct: 190 KEYKRRLEEAKRRDHRKLGKELGLFI-FADEVGPGLPLWTPKGTTLRWVLEDFLKQEQLK 248

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------KAMIYGPTHEEVMTDI 117
            G + +  P +   DL+  SG +  Y ++M  +   ++      +  +  P +      I
Sbjct: 249 RGYLPVVTPHIARVDLFKISGHWQKYREDMFPMMAESEEARAAEQGFVMKPMNCPFHIQI 308

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++S ++SYR+LP  + +    +R E     G + R R F + DA+ F + P+  +  + K
Sbjct: 309 YKSELRSYRDLPLRYAEFGTVYRYEQSGELGGLTRVRGFTVDDAHLF-VRPDQLEEEFLK 367

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F +L LK    R        D         D  E  +  + + +  P     
Sbjct: 368 VVDLILVVFDKLKLKDFRARLSFRDPKSDKYLGSPEEWDMAENAIRRAVEKLSMP----- 422

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               AA      + +F      +    R  ++G +      Y  
Sbjct: 423 -------------HFEGIGEAAFYGPKLDFIF------RDALDREWQLGTV---QVDYQN 460

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      +   DG +   V +     G++  +  ++   + G    W   +AP ++ ++ 
Sbjct: 461 PQRFDLYYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPFW---LAPEQVRILP 517

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +            ++  +L + G  V  D   +++  +   A+    P  +IVG K  + 
Sbjct: 518 V---SDQYLGYATQVRDQLREQGIRVHIDADSDRLPKKIRNAEKAKVPFMLIVGEKEQAT 574

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V ++ R       +++ + ++     
Sbjct: 575 GTVSVRQRHGKDLGSLTVADFLDQVQAL 602


>gi|319892279|ref|YP_004149154.1| Prolyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161975|gb|ADV05518.1| Prolyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 567

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/231 (46%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P +AE  SH+L+L+ G+I Q++ G+YS+LP+  + +  ++ IIR+E
Sbjct: 1   MKQSKVFIPTLREVPAEAEAISHQLLLKAGLIKQNAAGVYSYLPVATRVIHKISDIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEVVMPVLQQSELWKESGRWDAYGMELMRLRDRNQREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELRSYKQLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTDEESLMETYQNMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GL   P+ A+SG IGG+ +HEF  L+  GE  +  S +     
Sbjct: 181 YSTIFKRVGLNVRPVVADSGAIGGNHTHEFHALSAIGEDTIVYSNNSDYAA 231



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  G KYS  M AT     G++  + MG YGIG  R ++A+IE  HD  GIIW
Sbjct: 405 GIEVGQVFVLGEKYSEAMKATVLNQQGREQNLTMGCYGIGVSRTLSAIIEQHHDDNGIIW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI++       R   +++Y +L     DV +DD  E+ G +F  ADL+G 
Sbjct: 465 PKSVTPFDVHLISVNPKKDEQRACADRLYDQLLGT-YDVLYDDRNERAGVKFNDADLIGI 523

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P++V+VG K  S+  VE+K R TG  ED+ + +++ +    +  
Sbjct: 524 PVRVVVG-KNASEGIVEVKRRDTGDSEDVHVNDLVTHLEKLYEQ 566


>gi|84498663|ref|ZP_00997420.1| prolyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84381060|gb|EAP96946.1| prolyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 593

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/222 (43%), Positives = 140/222 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P DAE+  H+L++R G + + + GIY+WLPLG + L  V AI+REE
Sbjct: 1   MRMSSLFLRTLREDPVDAELPGHRLLVRAGYVRRAAPGIYTWLPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E++ P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   + 
Sbjct: 61  MDAIGAQELTFPALLPREPYEATNRWTEYGDNIFRLKDRKGGDYLLGPTHEEMFTLAVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD++ EG + SY     +
Sbjct: 121 MFSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFVMKDSYSFDVSDEGLEASYQAHRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y++IF RLG + + + A SG +GG  S EF+ ++  GE    
Sbjct: 181 YIKIFDRLGFEYVIVSAMSGAMGGSASEEFLAVSAIGEDTFV 222



 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 5/182 (2%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                   +ARGIE+GHIF  G K++  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 413 PDGNGVLHTARGIEMGHIFQLGRKFAEALDLKVLDENGKLVTVTMGSYGVGVSRAVAAIA 472

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           E + D  G+IWP +V P  + ++    +   D       ++I A L   G  V +DD  +
Sbjct: 473 EDNLDDLGLIWPRAVTPADVHVVATGKNRDRDGDVFAKADEITASLEAQGISVLYDDREK 532

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              G +F  ++L+G P  V+VG K + +  +EIK R +G R +++++ VI+         
Sbjct: 533 VSPGVKFKDSELIGIPTIVVVG-KSLENGVIEIKDRRSGERREVAVDSVIDEVLAEVRGG 591

Query: 446 RP 447
           R 
Sbjct: 592 RA 593


>gi|303277979|ref|XP_003058283.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460940|gb|EEH58234.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 725

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 157/443 (35%), Gaps = 43/443 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y L I +   RD  +    L          S G   +LP G    +N+   I+E+
Sbjct: 283 MK--EYKLRIEEAKKRDHRVLG--LHQELFFFDILSPGSCFFLPDGATIYNNLINFIKEK 338

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P + + DLW  SG    Y + M       ++     P +      +F  
Sbjct: 339 YWEYEYSEVVTPNIYNFDLWKTSGHAAHYKENMFSFNVEKEE-FGLKPMNCPGHCVMFGH 397

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+E      G+ R R F   DA+ F   P+  +H       
Sbjct: 398 RKRSFRELPMRLADFGVLHRNEFSGALHGLTRVRRFQQDDAHIF-CRPDQMEHELVNFMK 456

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   GL    M+  + P G     E    A+                 P +    
Sbjct: 457 FLDEVYEVFGLTY-EMKLSTRPEGYLGELEVWNQAEDALRNALNKSGKEWKLNPGDG--- 512

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  +FD+L    + +   ++    F    +++L   
Sbjct: 513 -----------------AFYGPKIDITVFDALKRRFQCATVQLD----FQLPIRFNL--- 548

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++   + +    + +    +G++  + A++     GK   W   ++P ++ L+ I    
Sbjct: 549 -SYVTENNEPARPIIIHRAILGSVERMFAILTEHFAGKYPYW---LSPKQVMLVPI---S 601

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  R+   ++  +L K G     D+   ++  +   A L  +   ++VG    ++  V +
Sbjct: 602 EASREYALEVKKQLRKAGHHAQVDETDRKMQKKVREAQLEHWNYILVVGEGEKTNRTVNV 661

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R   +  ++ LEE++   +  
Sbjct: 662 RTRDNVVHGEVKLEELMTVLNEE 684


>gi|184201256|ref|YP_001855463.1| prolyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|226701301|sp|B2GKS1|SYP_KOCRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183581486|dbj|BAG29957.1| prolyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 606

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 138/234 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ SHKL++R G I + + GIY+WLPLG   L  V  I+REE
Sbjct: 3   LRLSSLFLRTLREDPVDADVDSHKLLVRAGYIRRAAPGIYTWLPLGLAVLRRVEGIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  S R+  YG+ + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MDAIGAQEVHFPALLPREPYEASNRWTEYGENLFRLQDRKGADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y K   +
Sbjct: 123 MYSSYKDLPVMLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDDAYAKHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y+RIF RLGL  + + A SG +GG  S EF+  +  GE     S       + +
Sbjct: 183 YVRIFERLGLPVVAVSATSGAMGGSRSEEFMHPSVVGEDTFVRSAGGYAANVEA 236



 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 6/252 (2%)

Query: 196 RAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               G IG  LS E  +L     T + +     +                +  +V +   
Sbjct: 349 ELVKGYIGPGLSREDALLGTESPTGIPYFVDPRVVPGTRWITGANVAEAHVYDLVAERDF 408

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            + AT +    +  D  P+       ARG+E+GH+F  G KY+  +       +GK   V
Sbjct: 409 TWDATLEACTVREGDPAPDGSGPLEIARGMEMGHVFQLGRKYAEALGLKVLDNNGKLVTV 468

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MGSYGIG  R +AAV E  HD  G++WP +++P  + ++      +   +A E+I A L
Sbjct: 469 TMGSYGIGVTRALAAVAEFYHDEHGLLWPRNLSPADVHVVATGKGPE-VLEAAEEIVAHL 527

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G  V +DD  +   G +F  A+LLG P  ++VG + ++D  +E+K R +G   D++ 
Sbjct: 528 EAAGVSVLFDDRPKVSPGVKFRDAELLGVPTVLVVG-RGLADGVLELKDRRSGTSRDIAR 586

Query: 432 EEVINYASHRFS 443
           + V+   +    
Sbjct: 587 DRVVAEITAELQ 598


>gi|71899288|ref|ZP_00681449.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71730914|gb|EAO32984.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 303

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 152/224 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+       Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLSDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  S
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGEDVLAFS 224


>gi|148241975|ref|YP_001227132.1| prolyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|166980166|sp|A5GSC0|SYP_SYNR3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147850285|emb|CAK27779.1| Prolyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 600

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 148/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   L  L+++P +AEI SHKL+LR G I + + GIY++LPL  + L  V+AI+R+E
Sbjct: 1   MRVSALLLVTLRDDPAEAEIPSHKLLLRGGYIRRVASGIYAYLPLMWRVLRKVSAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P LQ A+LW  SGR+  Y      M  L DR D+ +  GPTHEEV+T +
Sbjct: 61  MDAAGALETLLPQLQPAELWQRSGRWSGYTAGEGIMFHLQDRQDRELGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + E     Y  M
Sbjct: 121 AADLLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASAEDLGRGYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL+ + ++A+SG IGG  S EF+V A+ GE  +  S D        
Sbjct: 181 DQAYRRIFSRCGLQVVAVQADSGAIGGSASQEFMVTAEAGEDLILSSADGSYAANQE 237



 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 6/255 (2%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G +G DLS   +  +   E+      D     +P      +   +            A+ 
Sbjct: 347 GYLGPDLSDAVLQGSKKLESSFLRLADPTALDLPLFICGANRFNAHRLAANWSEPGMASP 406

Query: 260 SDVH-----NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             V              P  +  + RGIEVGHIF  G KYS  + ATF    G+D  + M
Sbjct: 407 QRVELRAALPGDRCCHDPSQQLQARRGIEVGHIFQLGLKYSEALGATFANEQGQDAPLWM 466

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R+  A +E  HD  G++WP  +APF++ ++   + +    +  E +Y +L +
Sbjct: 467 GCYGIGVSRLAQAAVEQHHDSAGMVWPVPIAPFEVVIVIASSKEAQQVELAEDLYGQLQQ 526

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD  E+ G +F  A+L+G P +++VG +   + +VE+  R +G +++   +++
Sbjct: 527 AGVDVLLDDRNERAGVKFKDAELIGIPWRLVVG-RGAVNGQVELVERCSGEKQEGPHQDL 585

Query: 435 INYASHRFSNNRPVL 449
           +          R  L
Sbjct: 586 MAQLLQTLDQQRQGL 600


>gi|256396855|ref|YP_003118419.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256363081|gb|ACU76578.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 582

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/230 (46%), Positives = 148/230 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + GIYSWLPLG++ L+NV  ++REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRGGYVRRVAPGIYSWLPLGKQVLENVTRVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ +S 
Sbjct: 64  DRMGGQEVQFPALLPREYYEATGRWTEYGDNLFRLQDRRGNDYLLGPTHEEMFTDMVKSE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++LP T YQIQ K+RDE RPR G++R REFLMKD+YSFDL  +G KHSY +   +Y
Sbjct: 124 VSSYKDLPVTLYQIQTKYRDEARPRAGILRGREFLMKDSYSFDLDDDGLKHSYAEHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +RIF RLG+K   + A SG +GG  S EF+  A TGE       +     
Sbjct: 184 IRIFDRLGIKYKIVSAVSGAMGGSASEEFLATAPTGEDTYVACHNCGYAA 233



 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 4/172 (2%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                ++    RGIE+GHIF  G KY+        G DGK   V MGSYG+G  R VA +
Sbjct: 407 CPRCAHELSIDRGIEIGHIFQLGRKYADAAKLDVLGKDGKPVRVTMGSYGVGVSRAVAVL 466

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM--GE 386
            E  HD  G++WP  VAP  + ++     D    +   +    L   G  V +DD     
Sbjct: 467 AEQLHDELGLVWPREVAPADVHIVA-AGKDPAIYETANRYAEELGARGVRVLYDDRVGSV 525

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             G +F  A+L+G P  V+VG + ++D  VE++ R TG + ++++ +++ + 
Sbjct: 526 SPGVKFKDAELIGVPTIVVVG-RNLADGVVEVRDRQTGEKAEVAVPDLVEHV 576


>gi|189485254|ref|YP_001956195.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287213|dbj|BAG13734.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 598

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 153/439 (34%), Gaps = 39/439 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   I + + RD       L L +  I +    G+  W P G    D +    ++     
Sbjct: 189 YLTGIEEAHKRDHRKLGEDLDLFS--IDETVGGGLVLWHPKGALLKDIIENYWKKFHLEN 246

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +S P + S +L+  SG   +Y + M    +   K     P +  +   I+++ + S
Sbjct: 247 GYDLLSTPHIASEELFKVSGHLQTYSENMYASMEIEGKPYRIKPMNCPMHLMIYKTKLHS 306

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G++R R F   D +     PE  +     +F   + 
Sbjct: 307 YRELPVRYAELGTVYRFEKSGVLHGLLRVRGFTQDDGHIIVA-PEQLEEEMLGVFNMAVN 365

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                G     +   + P                E +     ++ +    S         
Sbjct: 366 CLKTFGFNEYKIYFATRP----------------EKKYVGEIEYWEKAQNSIENALKKTG 409

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            +  I E   A Y    D+  +   D +    + S    +    F    ++       + 
Sbjct: 410 CVYEIDEGGGAFYGPKIDIKIK---DVIGRLWQCSTLQFD----FNLPERF----DIFYV 458

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            + GK      +    +G++     V+   + G   +W   ++P ++++ NI    +  R
Sbjct: 459 NSSGKKARPYMIHRALLGSLERFIGVLLEHYAGALPLW---LSPIQVAVANIN---EEQR 512

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             CE +   L K    V +D   E+IG +     +   P   ++G+K      V ++ R 
Sbjct: 513 GFCEGLSQELKKNNIRVIFDGRNEKIGRKIRENAMQKIPYIAVIGNKEKDACAVAVRARG 572

Query: 423 TGIREDMSLEEVINYASHR 441
                 MS++  I++    
Sbjct: 573 NRDLGVMSVDNFISFVKEE 591


>gi|256545863|ref|ZP_05473219.1| threonine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398559|gb|EEU12180.1| threonine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 641

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 149/450 (33%), Gaps = 48/450 (10%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   ++ + +E  R D      ++ L +   H  + G   +   G      +     + 
Sbjct: 228 KQLDEYIELQEEAKRRDHRKIGKEMNLFS--FHDEAPGFPFFKENGMILRHELLNWWTDV 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG +D Y + M      + +     P +      ++  
Sbjct: 286 LAENGYGEIQTPLIMNEELWHRSGHWDHYKENMY-FTKIDGENYAVKPMNCPGSVLVYGE 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP    +     R EL     G+ R R F   DA+ + L P   K    KM  
Sbjct: 345 EPHSYRDLPIRLAEYGQVHRHELSGALHGLFRVRTFTQDDAHVYCL-PSQVKDEVFKMID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G K   +   + P       E    A+         +              
Sbjct: 404 LADLLYSTFGFKY-KIELSTRPDDFMGKIEEWDFAEKALEDALIERGIE----------- 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSL 296
                  +I  +  A Y    D H E            + R  + G I   F     +  
Sbjct: 452 ------YTINPKDGAFYGPKIDFHLEDA----------AKRTWQCGTIQLDFQLPQNF-- 493

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+   +G K   V +    +G++      +     G+  +W   + P ++ +I + 
Sbjct: 494 --DLTYIDENGEKKRPVMLHRALLGSIERFIGSVTEQFAGRFPLW---INPKQVEIIPV- 547

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D  + +  ++ K G  V  D   E +G +   A L+     ++VG       K
Sbjct: 548 --SDKFADFADDLAKKIKKAGYRVEVDHRSEGVGYKIRQAQLMRTNYMLVVGENEEKSGK 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + +++R     +D+S EE I        N 
Sbjct: 606 LTVRNRDGEETKDVSFEEFIEKLDEERDNK 635


>gi|330836194|ref|YP_004410835.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
 gi|329748097|gb|AEC01453.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
          Length = 588

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 151/450 (33%), Gaps = 45/450 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREE 60
           + +L  L+    D E   ++ + +   +     +   G+  W P G +    +    R+E
Sbjct: 178 RLYLQHLE----DVEKRDNRRLGKEQDLFSLHEEAGPGLVYWHPRGARVRVAIENFWRDE 233

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +  + LW  SG    Y   M    + +       P +      I+ +
Sbjct: 234 HYKNGYEMVFSPHVGRSWLWETSGHLGFYKDSMYPAMEMDKSDYYVKPMNCPFHIMIYNN 293

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP    ++   +R E      G+MR R F   DA+ F  TPE       K+  
Sbjct: 294 SKRSYRDLPIRMAELGTVYRYEKAGALHGLMRVRGFTQDDAHLF-CTPEQMDDEIRKVLE 352

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +    G + +     + P       E    A          +              
Sbjct: 353 FSLYMLRSFGFQDVKAYLSTRPEESVGERERWDAATKALRNAIEKEGLAYEVDEGGG--- 409

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + K+ D++    ++S    +           S    
Sbjct: 410 -----------------AFYGPKIDLKVKDAIGREWQLSTVQFDFNM--------SDRFQ 444

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            TF   DG++     +    +G++     V+  ++ G     P  +AP +I ++ +    
Sbjct: 445 MTFVDKDGQEKRPYMIHRALLGSIERFFGVLIENYAGAF---PPWLAPEQIMVVPVG--- 498

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +        +  RL K G     D   +++ ++   A L   P Q++VG +  S+ KV +
Sbjct: 499 EAFFPYATALRDRLRKEGLRADADLSDDRMNAKIRNAQLHKIPYQLVVGEREQSEDKVSV 558

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           ++R      D+   + I       +    V
Sbjct: 559 RYRNGNKANDVPTADFIAEVKAAVAAREQV 588


>gi|317969639|ref|ZP_07971029.1| prolyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 633

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/237 (45%), Positives = 150/237 (63%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEIASHKL+LR G I +   GIY++LPL  + L  V+A++REE
Sbjct: 26  MRVSRLMLVTLRDDPAEAEIASHKLLLRAGYIRRIGSGIYAYLPLLWRVLQKVSAVVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ ++LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 86  LNAAGALETLLPQLQPSELWQRSGRWAGYTDGEGIMFHLEDRQGRELGLGPTHEEVITAL 145

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF    +  K +Y  M
Sbjct: 146 AADLLRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEDCLKQTYGLM 205

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL+++ + A+SG IGG  S EF+V A++GE  +  + D        
Sbjct: 206 DQAYRRIFQRCGLRAVAVEADSGAIGGSASQEFMVTAESGEDLILAAGDGRYAANQE 262



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 119/266 (44%), Gaps = 10/266 (3%)

Query: 189 GLKSIPMRAESGPIGGDLSHEF----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           GL  IP     G IG DLS          A   E     +   ++  I   N  +   + 
Sbjct: 368 GLTGIPF----GYIGPDLSDSMLSGAKSWAPRFERFADGTATALEVFICGANERYAHRLG 423

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           ++          A              P     ++RGIEVGHIF  G KYS  + ATF  
Sbjct: 424 VSWAALGGAPDSADLRSAQPGDRCIHDPSQTLEASRGIEVGHIFQLGRKYSTALDATFTN 483

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G++  + MG YGIG  R+  A +E  HD  GI WP ++AP+++ ++          D 
Sbjct: 484 ESGQEEPLWMGCYGIGVSRLAQAAVEQHHDANGICWPTAIAPYEVIVVIANVKATEQVDL 543

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +Y +L   G DV  DD  E+ G +F   +LLG P +V+VG +  ++ +VE+  R TG
Sbjct: 544 AEGLYDQLQAAGVDVLLDDRSERAGVKFKDTELLGIPWRVVVG-RGAAEGQVELVQRSTG 602

Query: 425 IREDMSLEEV-INYASHRFSNNRPVL 449
            ++D++ +++            + +L
Sbjct: 603 AKQDLAADQLEATLLPQLLLERQGLL 628


>gi|297562530|ref|YP_003681504.1| prolyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846978|gb|ADH68998.1| prolyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 582

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 130/433 (30%), Positives = 203/433 (46%), Gaps = 36/433 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG+  L+NV  I+REE
Sbjct: 3   LRMSTLFLRTLREDPADAEVPSHKLLVRGGFVRRAAPGVYTWLPLGKIVLENVARIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P L   + +  +GR++ YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MDAIGAQEVLLPALLPREYYEATGRWEEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKG 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P T YQIQ KFRDE RPR GV+R REF MKD+YSFD+  EG + SY     +
Sbjct: 123 EYSSYKDFPVTLYQIQEKFRDEARPRAGVLRGREFHMKDSYSFDIDDEGLRASYADHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R+F RLGL+ + + A SG +GG  S EF+ +A TGE     S +              
Sbjct: 183 YIRVFDRLGLEYVIVSATSGAMGGSASEEFLAVAPTGEDTFVRSTESDYAA--------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                N       AP A   +   E      P+   +    ++  +    G  +S   + 
Sbjct: 234 -----NVEAVAVPAPEALPVEGLPEAAVHHTPDTATIQTL-VDFLNGAGLGRDFSEADTL 287

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                  K+  V+  + G     ++A  +    +        ++ P +++L  ++  D  
Sbjct: 288 -------KNVLVKTRAPGAKEWELLAVGLPGDREVDFKRLEAALEPAEVAL--LEEADFA 338

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDMGEQ-----IGSQFAVADLLGFPLQVIVGSKFVS 412
                 K Y     L         D           G+  A   ++G    ++ G  FV 
Sbjct: 339 ANPFLVKGYIGPRALLDNKVRYLVDPRVVTGTSWVTGADEADHHVVG----LVAGRDFVP 394

Query: 413 DSKVEIKHRLTGI 425
           D  +++     G 
Sbjct: 395 DGTIDVAEVRDGD 407



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 95/170 (55%), Gaps = 4/170 (2%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                   +ARGIE+GHIF  G KY+        G DGK   + MGSYGIG  R VAAV+
Sbjct: 410 PDGRGTLYTARGIEIGHIFQLGRKYTDAFQVDALGPDGKPRRITMGSYGIGVSRAVAAVV 469

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           E SHD KG++WP  VAP  + ++     +Q+  +   +I   L   G  V  DD  G   
Sbjct: 470 EQSHDDKGVVWPREVAPADVHVVGTGKGEQI--EEALRIARELEARGLRVLVDDRKGVSP 527

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G +F  A+LLG P  VIVG + + D  VE++ R TG RE+++L E+++ A
Sbjct: 528 GVKFTDAELLGVPTGVIVG-RGLKDGLVELRDRATGDREEVALAEIVDRA 576


>gi|67605980|ref|XP_666722.1| threonyl-tRNA synthetase [Cryptosporidium hominis TU502]
 gi|54657772|gb|EAL36495.1| threonyl-tRNA synthetase [Cryptosporidium hominis]
          Length = 763

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 162/440 (36%), Gaps = 19/440 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAII 57
           +R   +L +L+E    A+   H+L+   L+        S G   WLP G +  + +   I
Sbjct: 318 KRLDEYLNMLEE----AKKRDHRLLGSNLQLFFFDSNVSPGSCFWLPAGARLYNKLMDFI 373

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           R E       E+  P + S DLW  SG Y +Y + M    D  +K     P +      +
Sbjct: 374 RSEYRIREFTEVITPNIFSCDLWKTSGHYFAYKENMFIF-DVEEKEWGLKPMNCPGHCVM 432

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+    SYR LP       +  R+E      G+ R R F   DA+ F  TPE  +    K
Sbjct: 433 FKHMNPSYRQLPIRLADFGVLHRNEFSGALNGLTRVRRFQQDDAHIF-CTPEQIQEEVFK 491

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  I+ +LG     +   + P     + E    A+                 P + 
Sbjct: 492 ALDFLFFIYGQLGFTF-DLFLSTMPKEHLGTEEQWKEAENALKSALDKTGRDWKLNPGDG 550

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I +             T  +  +       + +       E  +     +  + 
Sbjct: 551 AFYGPKIDIMLWDALKRQHQCGTIQLDFQLPIRFNLQYRTDENISEESTNQEQPPSHQNA 610

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +       G    V +    +G++  ++AVI     GK   W   ++P +  +++I  
Sbjct: 611 DQNPDNSLKQGYKRPVIIHRAILGSVERMSAVILEHTGGKLPFW---LSPRQAIVLSI-- 665

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   +  + +   LS+ G DV  D     I  +   + LL +   +++G     D KV
Sbjct: 666 -SEKTVEYAKSVERELSRRGFDVSGDYSAATINKKIRESQLLQWNYMLVIGENEARDKKV 724

Query: 417 EIKHRLTGI-REDMSLEEVI 435
            ++ R T I +E ++L+++I
Sbjct: 725 TLRCRDTTIPQELLTLDQLI 744


>gi|323464624|gb|ADX76777.1| prolyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 567

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/231 (46%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P +AE  SH+L+L+ G+I Q++ G+YS+LP+  + +  ++ IIR+E
Sbjct: 1   MKQSKVFIPTLREVPAEAEAISHQLLLKAGLIKQNAAGVYSYLPVATRVIHKISDIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEVVMPVLQQSELWKESGRWDAYGMELMRLRDRNQREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELRSYKQLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTDEESLMETYQNMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GL   P+ A+SG IGG+ +HEF  L+  GE  +  S +     
Sbjct: 181 YSTIFKRVGLNVRPVVADSGAIGGNHTHEFHALSAIGEDTIVYSDNSDYAA 231



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  G KYS  M AT     G++  + MG YGIG  R ++A+IE  HD  GIIW
Sbjct: 405 GIEVGQVFVLGEKYSEAMKATVLNQQGREQNLTMGCYGIGVSRTLSAIIEQHHDDNGIIW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI++       R   +++Y +L     DV +DD  E+ G +F  ADL+G 
Sbjct: 465 PKSVTPFDVHLISVNPKKDEQRACADRLYDQLLGT-YDVLYDDRNERAGVKFNDADLIGI 523

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P++V+VG K  S+  VE+K R TG  ED+ + +++ +    +  
Sbjct: 524 PVRVVVG-KNASEGIVEVKRRDTGDSEDVHVNDLVTHLEKLYEQ 566


>gi|21224048|ref|NP_629827.1| prolyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|256784874|ref|ZP_05523305.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289768768|ref|ZP_06528146.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|15214317|sp|Q9KYR6|SYP_STRCO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7801271|emb|CAB91135.1| prolyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289698967|gb|EFD66396.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 567

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/230 (43%), Positives = 139/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK     L+++P DAE+ SHKL++R G + + + G++SWLPLG+K L N+  I+REE 
Sbjct: 8   RMSKLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGLWSWLPLGKKVLGNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+  YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVQLPALLPREPYEATGRWQEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVADEGLAESYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF RLGL    + A +G +GG  S EF+  A+ GE       +     
Sbjct: 188 QRIFERLGLDYRIVAATAGAMGGSKSEEFLAPAEAGEDTFADCPNCDYAA 237



 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 6/227 (2%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           GE   + +   +                  ++V           DV   +  D  P    
Sbjct: 344 GEKVTYIADPRVAPGTAWITGANKADTHAKNVVAGRDFEVDTYVDVVVVREGDPCPNCGT 403

Query: 277 --VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E   D
Sbjct: 404 GLKLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPARVTMGSYGIGVSRAVAALAEQHAD 463

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
            KG++W   VAP  + ++   A   +  +   ++  +L+  G  V  DD  G   G +F 
Sbjct: 464 DKGLVWSKEVAPADVHVV--AAGKALQTELALEVSDKLAAAGVRVLVDDRAGVSPGVKFT 521

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            A+L+G P  ++ G +   +  VE+K R TG RE++++EE +   + 
Sbjct: 522 DAELIGVPQILVAGRRS-GEGVVELKDRRTGEREEVTVEEALTRLTS 567


>gi|321252491|ref|XP_003192424.1| threonine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317458892|gb|ADV20637.1| Threonine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 771

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 163/454 (35%), Gaps = 41/454 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K +L   +   RD             + +  S G   +LP+G +  + +   I+EE
Sbjct: 349 MKEYKKYL--EEAAKRDHRKIGK--DQELFVFNDLSPGSAFFLPMGMRIYNTLMTFIKEE 404

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +A+LW  SG + +Y ++M +L    D+     P +      IF +
Sbjct: 405 YFKRGFSEVGSPNIFNANLWKTSGHWQNYAEDMFQLKVDEDQ-FALKPMNCPGHCLIFDA 463

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP  F +  +  R+E      G+ R R F+  DA+ F  TP+  +      F 
Sbjct: 464 RERSYKELPLRFAEFGVLHRNEASGALSGLTRVRRFVQDDAHIF-CTPDQVEAELYSAFE 522

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G       +   P       E    A+    +V   K   ++ +  E+  F
Sbjct: 523 FLDAVYKPFGFTYKVGLSTRNPKKWMGELELWNKAENTLREVLEQKVPGNWHVNEEDAAF 582

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   +                    D+L  N +     ++    F    +++L   
Sbjct: 583 YGPKLDFQLT-------------------DALKRNWQCGTIQLD----FNLPERFNLKYH 619

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +  +  DG      V +    +G++    A+I  S  GK   WP  ++P ++ +I +   
Sbjct: 620 SAEQSPDGTQFARPVMIHRAILGSLERFIAIITESTGGK---WPLWLSPRQVVVIPVAK- 675

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +K+     + G     D     +  +   A    +   ++VG   +    V 
Sbjct: 676 --PFTEYAQKVAKTFQEAGLYAEVDLTDNTLNKKIRNAQTAQWNFIMVVGQDELDAQAVN 733

Query: 418 IKHRLT---GIREDMSLEEVINYASHRFSNNRPV 448
           I++R     G  E + L   +        +   V
Sbjct: 734 IRNRDDEVQGREETVVLSRAVEQIVKLKESKAAV 767


>gi|320580027|gb|EFW94250.1| Threonyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 714

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 154/450 (34%), Gaps = 46/450 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L  L+E    A    H+ + R       H+ S G   WLP G +  + +  ++R + 
Sbjct: 298 KEHLKFLEE----AAARDHRKIGREQDLFFFHEMSPGSCFWLPHGARIYNGLCELLRTQY 353

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + ++ LW  SG + +Y + M       D      P +      +F+S 
Sbjct: 354 RKRGYEEVITPNMYNSKLWETSGHWANYKENMFTFEVEKD-TFGLKPMNCPGHCLMFKSR 412

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP+      +  R+E      G+ R R F   DA+ F  T +  +   + +F  
Sbjct: 413 ERSYRELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTQDQIEDEISGVFDF 471

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G +   M   + P       E    A+                 P +     
Sbjct: 472 LQHIYGIFGFEF-KMELSTRPEKYVGDIETWNNAEAKLESALNKWGGKWELNPGDG---- 526

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+L    + +   ++    F    ++ L    
Sbjct: 527 ----------------AFYGPKIDIMISDALKRWHQCATIQLD----FQLPNRFELEFRG 566

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               +      V +    +G++  + A++     GK   WP  ++P +I ++ +      
Sbjct: 567 K-DDSAEVQRPVMIHRAILGSIERMTAILTEHFAGK---WPFWLSPRQILVVPVGVR--- 619

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++   L   G     D  G  +  +     L  +    IVG +  ++  V I++
Sbjct: 620 YFDYAQEVQKLLQTEGFYADVDLSGNTLQKKVRTGQLQKYNFIFIVGEQEQNEKAVNIRN 679

Query: 421 RLTGIRED----MSLEEVINYASHRFSNNR 446
           R     +     + L +V+          R
Sbjct: 680 RDIQELQSKNDMVKLNDVLPKLHALRDEKR 709


>gi|289550945|ref|YP_003471849.1| Bacterial type prolyl-tRNA synthetase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658447|ref|ZP_07911319.1| proline--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|289180477|gb|ADC87722.1| Bacterial type prolyl-tRNA synthetase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496776|gb|EFU85099.1| proline--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 566

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MRQSKVFIPTMREVPAEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEILMPVLQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+   P+ A+SG IGG+ +HEF+ L+  GE  +  S +     
Sbjct: 181 YGRIFKRVGINVRPVLADSGAIGGNHTHEFMALSKIGEDTIVYSNESDYAA 231



 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 64/164 (39%), Positives = 100/164 (60%), Gaps = 2/164 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDDNGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P +V PF + LI +    +  +   + +Y +L+ +  DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKTVTPFDLHLITVNPKKEEQQSLADNLYEQLNGM-FDVLYDDRKERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P++++VG K  ++  VE+K R TG  ED+ +E++  Y    ++ 
Sbjct: 523 PIRIVVG-KQAAEGIVEVKVRRTGTSEDVHVEQLEQYIKAIYNE 565


>gi|70726652|ref|YP_253566.1| prolyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|114152257|sp|Q4L5W5|SYP_STAHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68447376|dbj|BAE04960.1| proline-tRNA ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 566

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  ++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTRRDVPAEAEALSHQLLLKAGLIKQSTSGIYSYLPLASRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S+      
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSEHSDYAA 231



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSEAMNATFLDNQGKAKPLIMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI I        +  +++Y  L +   DV +DD  ++ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLITINPKKDEQLELGDQLYKELQQQ-YDVLYDDRKDRAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P++++VG K  S+  VE+K R TG  E++ + ++  + +  +SN
Sbjct: 523 PIRIVVG-KNASEGIVEVKVRQTGESEEVHINDLNTHIATLYSN 565


>gi|326382934|ref|ZP_08204624.1| prolyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198524|gb|EGD55708.1| prolyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 576

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 138/222 (62%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+++P DAE+ SHKL++R G I + + GIY WLPLG K    V  ++REE +
Sbjct: 1   MSNLFLRTLRDDPADAEVPSHKLLVRAGYIRRAAPGIYEWLPLGLKVFRAVENLVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+ +P L   D +  +GR+  YG  + R+ DR    M+ GPTHEE+ T + +   
Sbjct: 61  AMGAQEILLPALLPRDPYETTGRWTEYGPALFRVKDRKGADMMLGPTHEEIFTQLVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G + SY+    +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEERPRAGLLRGREFVMKDSYSFDIDDAGLQASYDAHRAAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           RIF RLG+K + + A SG +GG  S EF+   + GE     S
Sbjct: 181 RIFDRLGVKYVIVAATSGAMGGSASEEFLAECEVGEDTFVRS 222



 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 94/177 (53%), Gaps = 4/177 (2%)

Query: 264 NEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  D  P+ K    +A+GIE+GHIF  G KY+   +    G +GK     MGSYG+G 
Sbjct: 396 EVRAGDPSPDGKGVLETAKGIEIGHIFQLGRKYTDAFAFDVLGENGKPVRPTMGSYGLGV 455

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+VA + E  HD KG+ WP  VAPF + L+ I   D+      +++ A L   G  V +
Sbjct: 456 SRMVAVLAEQLHDEKGLRWPREVAPFDVHLV-IANKDEAAVAGAQRLAADLDAAGVSVLF 514

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           DD     G +F  A+LLG P+ V+VG +  +D  +EI+ RL+G      ++  ++  
Sbjct: 515 DDRKASPGVKFKDAELLGMPVVVVVG-RGWADGTIEIRDRLSGETTAAPVDGAVDAV 570


>gi|218200880|gb|EEC83307.1| hypothetical protein OsI_28676 [Oryza sativa Indica Group]
          Length = 716

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 152/449 (33%), Gaps = 72/449 (16%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  +L+E    A+   H+L+ +T      HQ S G   +LP G    + +   +R
Sbjct: 336 KRLKEYKHLLEE----AKKRDHRLLGQTQDLFFFHQLSPGSCFFLPHGAIIYNKLMDFLR 391

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           ++    G  E+  P + +  LW  SG   +Y + M    +   +     P +      +F
Sbjct: 392 QQYRDRGYQEVLSPNIYNMQLWETSGHAANYKENMFVF-EIEKQEFGLKPMNCPGHCLMF 450

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +
Sbjct: 451 EHRVRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRESQIKDEVKAV 509

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K   +   + P       E    A+   T+              +  
Sbjct: 510 LDFINYVYEIFGFKY-ELELSTRPEKYLGDIETWNKAEQQLTEALNEFGKPWQINEGDGA 568

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +                                          I++G       K+   
Sbjct: 569 FYGPK---------------------------------------IDIGVFDALKRKFQCA 589

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                 G                ++  + A++   ++GK   WP  ++P +  + +I ++
Sbjct: 590 TLQAILG----------------SVERMFAILLEHYNGK---WPLWLSPRQAIVCSISSN 630

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V 
Sbjct: 631 S---VEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVS 687

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R       +S++++I       +  +
Sbjct: 688 VRVRDKAELATVSIDDIITRFKEEVAAYK 716


>gi|330932301|ref|XP_003303723.1| hypothetical protein PTT_16056 [Pyrenophora teres f. teres 0-1]
 gi|311320083|gb|EFQ88182.1| hypothetical protein PTT_16056 [Pyrenophora teres f. teres 0-1]
          Length = 776

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 153/465 (32%), Gaps = 36/465 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L  L+E   RD      +        H+ S G   +LP GQ   + + A +REE   
Sbjct: 320 QAHLKFLEEAAKRDHRKIGKE--QELFFFHEFSPGSCFFLPHGQIIYNTLQAFLREEYWN 377

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW  SG +  Y  +M    D   +     P +      IF+   +
Sbjct: 378 RGYQEVGSPNMYNSALWKISGHWQHYADDMFTF-DVEKEKWALKPMNCPGHCLIFKHRER 436

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP       +  R+E      G+ R R F   D + F  T +      + +F    
Sbjct: 437 SYRELPIRMADFGILHRNEASGALTGLTRVRRFQQDDTHVF-CTQDQITEEISALFDFLR 495

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC------------SKDFMDF 230
            ++ + G     M+  + P G     E    A+   T+               +     F
Sbjct: 496 AVYGKFGFTF-KMKLSTRPEGFLGDIETWDKAEGKLTEALNQFTAAGGSAWELNPGDGAF 554

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
             P  +    D +            +   +    E +   +   K       E GHI   
Sbjct: 555 YGPKIDITISDALKREFQCATIQLDFQLPNQFELEYMTSEVIPVKNKDQLQ-EGGHIEQK 613

Query: 291 -----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                G   ++P         G    V +     G+     A++     G    WP  ++
Sbjct: 614 KEKLEGADVTIPKKIKEP-QPGYARPVMIHRAIYGSFERFIAILTEHFAG---RWPFWLS 669

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ +I +        D  +++ A L K       D  G  +  +   A L  +   ++
Sbjct: 670 PRQVMIIPVMPG---ANDYVKEVQAELRKHRLHADIDISGNTMQKKIRTAQLALYNFIMV 726

Query: 406 VGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           VG++      V  ++R     +     + L+E +          R
Sbjct: 727 VGAEEQQARAVNWRNRDDQETQQRGVIVPLDEAVKKLVELRDERR 771


>gi|297156817|gb|ADI06529.1| prolyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 566

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/230 (44%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  L  L+E+P DAE ASHKL++R G + + S GI++WLP+G+K L+NV  I+REE 
Sbjct: 6   RMSRLMLKTLREDPADAETASHKLLVRAGYVRRTSAGIWTWLPIGKKVLENVARIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + R+ DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRIKDRKGADYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVILYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAESYRLHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 186 QRIFERLGLDYRIVSAISGAMGGSASEEFLAPAAAGEDTFVDCPNCDYAA 235



 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 6/178 (3%)

Query: 265 EKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P         R IE+GHIF  G KY+        G +GK   V MGSYGIG  
Sbjct: 391 VRPGDPCPRCGAGIELDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVS 450

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R VAA+ E +HD  G+ WP  VAP  + ++   A   +  +   ++  +L   G  V  D
Sbjct: 451 RAVAALAEQTHDESGLCWPREVAPADVHIV--AAGKALQTELALELADKLGTAGVRVMVD 508

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D  G   G +F  A+L+G P  ++VG +   D  VE+K R TG RE++ ++E ++  +
Sbjct: 509 DRAGVSPGVKFTDAELIGVPTILVVG-RGAKDGVVELKDRRTGEREELPVDEALSRLT 565


>gi|242373554|ref|ZP_04819128.1| prolyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348917|gb|EES40519.1| prolyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 567

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +     
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNESEYAA 231



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 5/231 (2%)

Query: 218 ETQVFCSKDFMDFP--IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           E +++      D    +   N D    ++ N   +     Y     +   ++  S    +
Sbjct: 340 EIKIYADNYVQDLNNLVVGANEDGYHYVNANVGRDFEIDQYGDFRFILEGEML-SDGSGE 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D 
Sbjct: 399 AQFAEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNNDE 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP SV PF++ LI I       R+   ++Y++L+    DV +DD  E+ G +F  A
Sbjct: 459 NGIIWPKSVTPFELHLITINPKKDEQRELGNQLYSQLNG-RYDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+V+VG +   +  VE+K RL G  ED+ ++++ NY    + N +
Sbjct: 518 DLIGLPLRVVVGKR-AGEGIVEVKQRLNGESEDVHIDDLENYLKSLYENLK 567


>gi|68536224|ref|YP_250929.1| prolyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|260578924|ref|ZP_05846827.1| proline--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|114152185|sp|Q4JV46|SYP_CORJK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68263823|emb|CAI37311.1| proS [Corynebacterium jeikeium K411]
 gi|258602898|gb|EEW16172.1| proline--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 596

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 177/386 (45%), Gaps = 18/386 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L N+ A++REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLVRAGYIRRVAPGVYSWLPLGLRVLRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S P L   + +  +GR+  YG  + RL DR +   + GPTHEE+ T + +S 
Sbjct: 64  NAIGAQEISFPALLPREPYDTTGRWVEYGDALFRLKDRKNADYLLGPTHEEMFTSVVKSE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQ+Q K+RDE RPR G++R REF+MKD+YSF++  EG + SY     +Y
Sbjct: 124 YNSYKDFPVILYQVQTKYRDEERPRAGILRGREFIMKDSYSFNMDDEGLEESYQLHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF RLG+K     A SG +GG  S EF+ +A  GE     S +               
Sbjct: 184 QNIFDRLGIKYAICSATSGAMGGSASEEFLAVAANGEDTFVRSTESDYAANVEAVVTQVP 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                    +        S+     +  +  E   +  R +E            + ++  
Sbjct: 244 PAQPIEGQPEAKEYETPDSETIEALVEWANSEGITIDGRAVEAADTLKC---IVIKVNDP 300

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +GK               +   ++  + +        S+ P ++ L      D   
Sbjct: 301 TLDEEGKPR----------GESLAGVLVPGNREVDMKRLEASMEPAQVELA--DEADFKK 348

Query: 362 RDACEKIY---ARLSKVGCDVFWDDM 384
                K Y     L+  G  V  D  
Sbjct: 349 NPFLVKGYVGPKGLAANGVRVLADPR 374



 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 4/170 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+           GK     MGSYG+G  R+V  + E   D  G+ 
Sbjct: 429 RGIEIGHIFQLGRKYTEAFDVKILDESGKRSVPTMGSYGVGVSRLVGVIAEQMLDDSGLR 488

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP SVAPF + ++ I   D    +A  ++   LS  G +V +DD  +   G +F  ++LL
Sbjct: 489 WPASVAPFDVHVV-IANKDAAAGEAAVELVETLSNDGLEVLFDDRPKVSPGVKFKDSELL 547

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS-NNRP 447
           G PL V+VG +  +D KVE+++RLTG   ++   + +  A        RP
Sbjct: 548 GMPLVVVVG-RGFADGKVELRNRLTGETYEVDYTDALPEAKRALRGEARP 596


>gi|254973700|ref|ZP_05270172.1| prolyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091090|ref|ZP_05320568.1| prolyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255312745|ref|ZP_05354328.1| prolyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515506|ref|ZP_05383182.1| prolyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255648598|ref|ZP_05395500.1| prolyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|260681818|ref|YP_003213103.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685415|ref|YP_003216548.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
 gi|306518722|ref|ZP_07405069.1| prolyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|260207981|emb|CBA60132.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211431|emb|CBE01529.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 571

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEIPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE +V          
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSAEFMVKSEVGEDEVVFCSGCDYAA 231



 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 110/224 (49%), Gaps = 17/224 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GPIG +  + FI      +  +    +  ++ I + N                       
Sbjct: 334 GPIGINADYVFIDKEIVEQRNIVVGANKTEYHIKNANYG--------------RDFEGIV 379

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D  N +  D      +    ARG+EVGHIF  GTKYS  M+A F   DGK   + MG Y
Sbjct: 380 GDFRNVQEGDQCIVCGKPLEIARGVEVGHIFKLGTKYSESMNANFIDKDGKSKPIVMGCY 439

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R  AA+IE  +D KGIIWP SVAP+ + ++     ++      E IY  L  +G 
Sbjct: 440 GIGVERTAAAIIEQHNDEKGIIWPLSVAPYHVVIVPANMKNEEQISIAENIYNDLQAMGV 499

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +V  DD  E+IG +F  ++L+G P+++ VG K +++ KVE K R
Sbjct: 500 EVLLDDRDERIGVKFNDSELIGIPMRITVG-KNINEGKVEFKLR 542


>gi|219681500|ref|YP_002467885.1| threonyl-tRNA synthetase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471181|ref|ZP_05635180.1| threonyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254783512|sp|B8D8S6|SYT_BUCA5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219624343|gb|ACL30498.1| threonyl-tRNA synthetase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 642

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 151/433 (34%), Gaps = 45/433 (10%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           + E   H+ +   L+   + + S G+  W   G    + +   +R +       E+  P 
Sbjct: 238 ELEKRDHRKIGKFLQLYHMQEESPGMIFWHNKGWIIFNELQNFVRVKLKEYKYEEVKTPL 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    +W +SG +D+Y   +      + +     P +      IF S +KSYR+LP    
Sbjct: 298 LIDKLIWKQSGHWDNYKNAIFTTLSEH-REYCIKPMNCPGHVQIFNSRLKSYRDLPIRMA 356

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  +   N        ++     K 
Sbjct: 357 EFGSCHRNEPSGSLHGLMRVRNFTQDDAHIF-CTREQVRSEINDCIKMIYDLYSTFHFKK 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + P     +      ++                      D  D++  N +  ++
Sbjct: 416 ILVKLSTRPEKRIGTDSLWNESEK---------------------DLSDMLIENHLSFEY 454

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKD 309
            +   A      E +       +    R  + G I   FY   + S   S      + K 
Sbjct: 455 QSGEGAFYGPKIEFIL------QDSLDRNWQCGTIQLDFYLPLRLS---SFYINEKNEKK 505

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++     ++     G    W   ++P ++ +I+I           ++++
Sbjct: 506 VPVIIHRAILGSIERFIGILIEECSGNLPTW---LSPVQVVIISITDISSG---YVKELF 559

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            + S V   +  D   E+IG +     L   P  +I G K  S  K+ +++R       +
Sbjct: 560 KKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGHNFGMI 619

Query: 430 SLEEVINYASHRF 442
            ++  I       
Sbjct: 620 DVDFFIKKLQKEI 632


>gi|254995424|ref|ZP_05277614.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str.
           Mississippi]
          Length = 636

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 149/432 (34%), Gaps = 45/432 (10%)

Query: 14  NPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +      I   + G   W   G      +   IR +  + G  E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIRCKLKKHGYHEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + D + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E      G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             S+ ++    P     S E    ++    +   +          E   +   +      
Sbjct: 414 FDSVTVKLSDRPENRIGSDEIWDRSEQSLMEPMNALGVQYTINKGEGAFYGPKLEFTL-- 471

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
                                    K    R  + G +      + LP  + A + G DG
Sbjct: 472 -------------------------KDSIGREWQCGTV---QLDFVLPDRLGAYYIGEDG 503

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H  V +    +G +     ++   + G    W   +AP ++ ++ +        +   
Sbjct: 504 KKHIPVIIHRAILGTIERFIGILIEHYAGNIPAW---LAPVQLEILTVSG---EVAEYAR 557

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +    S+    V  +   E I  +   A     P+  +VG     D  V ++   +G  
Sbjct: 558 DLAEMASQENVRVELNAAEENISHKIRKAIFNKVPIVWVVGKSEAGDRCVSVRRYGSGET 617

Query: 427 EDMSLEEVINYA 438
             M+  + +   
Sbjct: 618 CRMAAGKALKTL 629


>gi|299745880|ref|XP_001841372.2| tars protein [Coprinopsis cinerea okayama7#130]
 gi|298406796|gb|EAU80442.2| tars protein [Coprinopsis cinerea okayama7#130]
          Length = 720

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 163/450 (36%), Gaps = 42/450 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L   ++   +A    H+ + R       +  S G   WLP G +  + +  ++REE 
Sbjct: 299 KKQLSEYKKFLEEAAKRDHRKIGREQELWFFNDLSPGSCFWLPHGTRIYNTLVELMREEY 358

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + ++ LW  SG + +Y ++M  L D   +     P +      IF S 
Sbjct: 359 FKRGYQEVISPNMYNSKLWETSGHWQNYKEDMFTL-DVEKEKWALKPMNCPGHCLIFDSR 417

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY+ LP    +  +  R+E      G+ R R F+  D + F + P   +   + +F  
Sbjct: 418 DRSYKELPIRMAEFGIIHRNEASGALTGLTRVRRFVQDDTHVFCM-PSQLEDEISALFDF 476

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G +   +   + P       E    A+    Q         + +   +  F 
Sbjct: 477 MRHIYGLFGFEF-HLELSTRPENFLGEIETWNQAEDQLKQALEKHYPGQWELNPGDGAFY 535

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +I                    D+L  + + +   ++      F  KY      
Sbjct: 536 GPKIDITIR-------------------DALKRSFQCATIQLDFQLPERFNLKYRSA--- 573

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                      V +    +G++    A++     GK   WP  ++P +I +I + A    
Sbjct: 574 ---DESELTRPVIIHRAILGSLERFVAIVTEHFAGK---WPFWLSPRQILVIPVAA---P 624

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++   +I  RL+ +G     D+    +  +    ++  +   ++VG + +    V +++
Sbjct: 625 YKEYAAEIANRLTSLGLYADVDNGENTLPKKIRNGEIAQYNFILVVGQEELDARSVNVRN 684

Query: 421 RLT-GIR---EDMSLEEVINYASHRFSNNR 446
           R   G +   + + LE VI          R
Sbjct: 685 RDDVGTKAKGQMVPLETVIEQFVSLKKERR 714


>gi|1464742|gb|AAB04939.1| threonyl-tRNA synthetase [Homo sapiens]
          Length = 712

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 151/441 (34%), Gaps = 42/441 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 294 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGVYIYNALIEFIRSEYR 353

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +    + +F    
Sbjct: 354 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHSLMFDHRP 412

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP          R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 413 RSWRELPLRLADFGGLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 471

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 472 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 525

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L    +
Sbjct: 526 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY-VS 565

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             G D K   V +    +G++  + A++  ++ GK  + P  ++P ++ ++ +      C
Sbjct: 566 HDGED-KKRPVIVHRAILGSVERMIAILTENYGGK--LAPFWLSPRQVMVVPVGP---TC 619

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  + +  +          D D G  +  +   A L  +   ++VG K      V I+ 
Sbjct: 620 DEYAQNVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKITGTVNIRT 679

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R   +  + ++ E I      
Sbjct: 680 RDNKVHGERTISETIERLQQL 700


>gi|254730106|ref|ZP_05188684.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 213

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/210 (70%), Positives = 181/210 (86%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           YLR F R+GL++IPMRA++GPIGGDLSHEF
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEF 213


>gi|239928618|ref|ZP_04685571.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291436943|ref|ZP_06576333.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291339838|gb|EFE66794.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 567

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFDL  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQTKFRDEARPRAGILRGREFLMKDSYSFDLEDEGLARSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++F RLGL      A +G +GG  S EF+  A+ GE   F      DF   +E   +
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDT-FADCPNCDFAANTEAIAY 244



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 4/174 (2%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+
Sbjct: 397 CPRCGTGLKLDRAIEIGHIFQLGRKYTDALKLDVLGQNGKPVRVTMGSYGIGVSRAVAAL 456

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
            E + D KG+ WP  VAP  + ++   A   +  +    +  +L+  G  V  DD  G  
Sbjct: 457 AEQTADDKGLCWPQEVAPADVHVV--AAGKALQTELALDVSEKLAAAGVRVLVDDRPGVS 514

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G +F  ++L+G P  ++ G +  ++  VE+K R TG RE++++EE I   +  
Sbjct: 515 PGVKFTDSELIGVPRILVAGRR-AAEGVVELKDRRTGEREELTVEEAIARLTAH 567


>gi|126697615|ref|YP_001086512.1| prolyl-tRNA synthetase [Clostridium difficile 630]
 gi|255099207|ref|ZP_05328184.1| prolyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255304990|ref|ZP_05349162.1| prolyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|123174666|sp|Q18CD2|SYP1_CLOD6 RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|115249052|emb|CAJ66863.1| Prolyl-tRNA synthetase [Clostridium difficile]
          Length = 571

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEIPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE +V          
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSAEFMVKSEVGEDEVVFCSGCDYAA 231



 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 110/224 (49%), Gaps = 17/224 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GPIG +  + FI      +  +    +  ++ I + N                       
Sbjct: 334 GPIGINADYVFIDKEIVEQRNIVVGANKTEYHIKNANYG--------------RDFEGIV 379

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D  N +  D      +    ARG+EVGHIF  GTKYS  M+A F   DGK   + MG Y
Sbjct: 380 GDFRNVQEGDKCIVCGKPLEIARGVEVGHIFKLGTKYSESMNANFIDKDGKSKPIVMGCY 439

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R  AA+IE  +D KGIIWP SVAP+ + ++     ++      E IY  L  +G 
Sbjct: 440 GIGVERTAAAIIEQHNDEKGIIWPLSVAPYHVVIVPANMKNEEQISIAENIYNDLQAMGV 499

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +V  DD  E+IG +F  ++L+G P+++ VG K +++ KVE K R
Sbjct: 500 EVLLDDRDERIGVKFNDSELIGIPMRITVG-KNINEGKVEFKLR 542


>gi|260757796|ref|ZP_05870144.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|260668114|gb|EEX55054.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 210

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/210 (70%), Positives = 181/210 (86%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           YLR F R+GL++IPMRA++GPIGGDLSHEF
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEF 210


>gi|148238958|ref|YP_001224345.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166980165|sp|A5GJD3|SYP_SYNPW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147847497|emb|CAK23048.1| Prolyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 594

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 151/237 (63%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I +   GIY++LP+  K L  +NAI+R E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIPSHQLLVRGGYIRRIGSGIYAYLPMMWKVLRKINAIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ ADLW  SGR+  Y +    M  L DR ++ +  GPTHEEV+T++
Sbjct: 61  LNHLGALETLLPQLQPADLWERSGRWQGYTEGEGIMFHLEDRQNRQLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  +++Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANQEDLENTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL+++ + A+SG IGG  S E++V A  GE  +  S D +      
Sbjct: 181 ATAYARIFERCGLEAVAVDADSGAIGGAASQEYMVTAAAGEDLILTSSDGLYAANQE 237



 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 104/249 (41%), Gaps = 4/249 (1%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IG DLS   +    + E       D     +P      +              P    
Sbjct: 346 GAIGPDLSDTALKGCRSWENHFLRLADATALDLPRFVCGANSKDQHCWGRTWDAMPAQIK 405

Query: 260 SDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +D+   +  D     P       RGIEVGHIF  G KYS  + A F  + G+   + MG 
Sbjct: 406 ADLRTARAGDQCVHDPSQTLSECRGIEVGHIFQLGRKYSEALDARFTNSAGQQEALLMGC 465

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD  GI WP  +APF++ ++  K  D       E++Y      G
Sbjct: 466 YGIGISRLAQAAVEQHHDEAGISWPLGIAPFQVIVVIAKIQDPTQVALAEELYQSFLDAG 525

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD  E+ G +F  ADL+G P +++VG +   + KVE+  R T     +  +E   
Sbjct: 526 IDALLDDRDERAGVKFKDADLIGIPWRIVVG-RDAGEGKVEVVERSTRCSTSVPHQEAFQ 584

Query: 437 YASHRFSNN 445
                 S +
Sbjct: 585 QVKDSISTH 593


>gi|302788105|ref|XP_002975822.1| hypothetical protein SELMODRAFT_267898 [Selaginella moellendorffii]
 gi|300156823|gb|EFJ23451.1| hypothetical protein SELMODRAFT_267898 [Selaginella moellendorffii]
          Length = 420

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 152/443 (34%), Gaps = 46/443 (10%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   Q    +A+   H+ +   L    I +    G+  W P G      +    ++   R
Sbjct: 16  LKAYQTQKEEAKRRDHRRLGQDLEIFSIQEDAGGGLVFWHPKGALIRHLIEDYWKKVHLR 75

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  A+LW  SG  D Y + M       ++     P +      I++  ++
Sbjct: 76  RGYELLYTPHIAKAELWKRSGHLDFYKENMFEQIKIEEEFYQLRPMNCPFHIQIYKDRVR 135

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  F ++   +R EL     G+ R       DA+ F L PE  +     +     
Sbjct: 136 SYRELPIKFAELGTVYRYELSGALHGLFR------DDAHIFCL-PEQIRGEIKSVLDLTE 188

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I  + G ++  +   + P     S +    A          K +               
Sbjct: 189 EILSQFGFQNYEINLSTKPEKAVGSDDIWHKATEALKDAISDKGWTYGIDEGGG------ 242

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + S   ++      F   Y  P  A  
Sbjct: 243 --------------AFYGPKIDLKIEDAIGRKWQCSTIQVDFNLPERFDLTYVDPSQA-- 286

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   + +     G++     ++  S+ G   +W   +AP +  L+ +   +    
Sbjct: 287 -----RKQPIMIHRAIFGSIERFVGILIESYAGDFPLW---IAPVQARLLPVTDTE---L 335

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C+++ ARL +          GE++      A++   PL  +VG K V    + ++ R 
Sbjct: 336 PYCKQVLARLREKDIRAEI-ACGERLSKLIRNAEVQKIPLMAVVGPKEVEAQTLTVRTRH 394

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +S++EVI+      +  
Sbjct: 395 GGELGTLSVDEVIDRIETAVATR 417


>gi|227488647|ref|ZP_03918963.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227543250|ref|ZP_03973299.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091541|gb|EEI26853.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181059|gb|EEI62031.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 588

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/230 (42%), Positives = 137/230 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGVYTWLPLGLRVLRKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  NAIGGQELRFPALLPREPYELTQRWTEYGNSLFRLKDRKGNDMLLGPTHEEMFTQVVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   SY     +Y
Sbjct: 124 YSSYKDFPVLLYQIQTKYRDEERPRAGILRGREFVMKDSYSFNMDDEGLDESYQNHRQAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             IF+RLGL  +  +A SG +GG  S EF+ +++ GE     S D     
Sbjct: 184 QNIFNRLGLDYVICKATSGAMGGSASEEFLAVSENGEDTFVQSSDKTYAA 233



 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RGIE+GHIF  G KY+  M       +GK     MGSYGIG  R +A ++
Sbjct: 412 PNGTGTLTLQRGIEIGHIFQLGRKYTTAMDVQILDENGKRSVPTMGSYGIGVSRAMAVIV 471

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E S+D KG++WP  VAP+ + ++ +   D+  +DA EK+ A L   G +V +DD  +   
Sbjct: 472 EQSYDDKGLVWPACVAPYHVHVV-VANKDKEAQDAAEKLVADLDAAGIEVLFDDRPKVSP 530

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G +F  A+LLG P  V++G +   D ++E + R  G    + ++  + + 
Sbjct: 531 GVKFKDAELLGIPYTVVLG-RAFKDGEIEFRVRA-GETSTIPVDGALEHI 578


>gi|222475619|ref|YP_002564036.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Florida]
 gi|255003612|ref|ZP_05278576.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Puerto
           Rico]
 gi|254783506|sp|B9KH76|SYT_ANAMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222419757|gb|ACM49780.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Florida]
          Length = 636

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 150/432 (34%), Gaps = 45/432 (10%)

Query: 14  NPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +      I   + G   W   G      +   IR +  + G +E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIRCKLKKHGYLEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + D + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E      G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             S+ ++    P     S E    ++    +   +          E   +   +      
Sbjct: 414 FDSVTVKLSDRPENRIGSDEIWDRSEQSLMEPMNALGVQYTINKGEGAFYGPKLEFTL-- 471

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
                                    K    R  + G +      + LP  + A + G DG
Sbjct: 472 -------------------------KDSIGREWQCGTV---QLDFVLPDRLGAYYIGEDG 503

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H  V +    +G +     ++   + G    W   +AP ++ ++ +        +   
Sbjct: 504 KKHIPVIIHRAVLGTIERFIGILIEHYAGNIPAW---LAPVQLEILTVSG---EVAEYAR 557

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +    S+    V  +   E I  +   A     P+  +VG     D  V ++   +G  
Sbjct: 558 DLAEMASQENVRVELNAAEENISHKIRKAIFNKVPIVWVVGKSEAGDRCVSVRRYGSGET 617

Query: 427 EDMSLEEVINYA 438
             M+  + +   
Sbjct: 618 CRMAAGKALKTL 629


>gi|297571190|ref|YP_003696964.1| prolyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931537|gb|ADH92345.1| prolyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 595

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 159/316 (50%), Gaps = 9/316 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+++P DAE+ SHKL++R G + + + GIY+WLPLG K L  V A++REE +
Sbjct: 1   MSELFVRTLRDDPADAEVRSHKLLVRAGYVRRAAPGIYTWLPLGLKVLRKVEAVVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G+ EM  P L   + +  + R++ YG  + RL DR +   +  PTHEE+ T   +   
Sbjct: 61  AAGSQEMHFPALLPREPYEATNRWEEYGPNLFRLKDRRENDYLLAPTHEEMFTLAVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR G++R+REF+MKDAYSFD+   G  HSY  M  +Y 
Sbjct: 121 SSYKDLPVSLYQIQHKYRDEARPRAGIIRTREFIMKDAYSFDIDDSGLDHSYETMRNAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLG+  +   A+SG +GG  S EF+     GE     S         +  T     
Sbjct: 181 RIFTRLGVPFVICSAQSGAMGGSRSEEFLAPCAIGEDTFVKSAGGYAANTEAVTTPPQPE 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              + +      P           L D    N   + R  E        +     +   F
Sbjct: 241 QDFSGVPAPHIVPTP--GATTIVSLVDFANANAPRADRAWEA-------SDTLKNVVVAF 291

Query: 303 KGADGKDHYVQMGSYG 318
              DGK   V +G  G
Sbjct: 292 VHPDGKREVVVIGVPG 307



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIE+GHIF  G KY+  +       +GK   V MGSYGIG  RV+AA+ E + D KG
Sbjct: 428 IERGIEIGHIFQLGRKYAKALDLKVLDQNGKAVVVTMGSYGIGVSRVMAALAELNSDDKG 487

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           + WP  +AP  + +I     D    D   +  A LS+ G +V +DD      G +FA  +
Sbjct: 488 LAWPAHLAPATVHVIA-TGKDDAVFDTASRFAAELSEQGVEVIYDDRVKVSAGVKFADYE 546

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           L+G P  ++VG + + D KVEI+ R +G   ++ + + +   
Sbjct: 547 LIGVPFAIVVG-RGLKDGKVEIRDRRSGENVEVPVGDALATL 587


>gi|219682056|ref|YP_002468440.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254783513|sp|B8D730|SYT_BUCAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219621789|gb|ACL29945.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085869|gb|ADP65951.1| threonyl-tRNA synthetase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086439|gb|ADP66520.1| threonyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087022|gb|ADP67102.1| threonyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087587|gb|ADP67666.1| threonyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 642

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 151/433 (34%), Gaps = 45/433 (10%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           + E   H+ +   L+   + + S G+  W   G    + +   +R +       E+  P 
Sbjct: 238 ELEKRDHRKIGKFLQLYHMQEESPGMIFWHNKGWIIFNELQNFVRVKLKEYKYEEVKTPL 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    +W +SG +D+Y   +      + +     P +      IF S +KSYR+LP    
Sbjct: 298 LIDKLIWKQSGHWDNYKNAIFTTLSEH-REYCIKPMNCPGHVQIFNSRLKSYRDLPIRMA 356

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  +   N        ++     K 
Sbjct: 357 EFGSCHRNEPSGSLHGLMRVRNFTQDDAHIF-CTREQVRSEINDCIKMIYDLYSTFHFKK 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + P     +      ++                      D  D++  N +  ++
Sbjct: 416 ILVKLSTRPEKRIGTDSLWNESEK---------------------DLSDMLIENHLSFEY 454

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKD 309
            +   A      E +       +    R  + G I   FY   + S   S      + K 
Sbjct: 455 QSGEGAFYGPKIEFIL------QDSLDRNWQCGTIQLDFYLPLRLS---SFYINEKNEKK 505

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++     ++     G    W   ++P ++ +I+I           ++++
Sbjct: 506 VPVIIHRAILGSIERFIGILIEECSGNLPTW---LSPVQVVIISITDISSG---YVKELF 559

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            + S V   +  D   E+IG +     L   P  +I G K  S  K+ +++R       +
Sbjct: 560 KKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGHNFGMI 619

Query: 430 SLEEVINYASHRF 442
            ++  I       
Sbjct: 620 DVDFFIKKLQKEI 632


>gi|255004741|ref|ZP_05279542.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Virginia]
          Length = 636

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 150/432 (34%), Gaps = 45/432 (10%)

Query: 14  NPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +      I   + G   W   G      +   IR +  + G +E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIRCKLKKHGYLEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + D + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E      G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             S+ ++    P     S E    ++    +   +          E   +   +      
Sbjct: 414 FDSVTVKLSDRPENRIGSDEIWDRSEQSLMEPMNALGVQYTINKGEGAFYGPKLEFTL-- 471

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
                                    K    R  + G +      + LP  + A + G DG
Sbjct: 472 -------------------------KDSIGREWQCGTV---QLDFVLPDRLGAYYIGEDG 503

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H  V +    +G +     ++   + G    W   +AP ++ ++ +        +   
Sbjct: 504 KKHIPVIIHRAVLGTIERFIGILIEHYAGNIPAW---LAPVQLEILTVSG---EVAEYAR 557

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +    S+    V  +   E I  +   A     P+  +VG     D  V ++   +G  
Sbjct: 558 DLAEMASQENVRVELNAAEENISHKIRKAIFNKVPIVWVVGKSEAGDRCVSVRRYGSGET 617

Query: 427 EDMSLEEVINYA 438
             M+  + +   
Sbjct: 618 CRMAAGKALKTL 629


>gi|66362768|ref|XP_628350.1| threonyl-tRNA synthetase (RNA binding domain TGS+HxxxH+tRNA
           synthetase) [Cryptosporidium parvum Iowa II]
 gi|46229397|gb|EAK90215.1| threonyl-tRNA synthetase (RNA binding domain TGS+HxxxH+tRNA
           synthetase) [Cryptosporidium parvum Iowa II]
          Length = 763

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 161/440 (36%), Gaps = 19/440 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAII 57
           +R   +L +L+E    A+   H+L+   L+        S G   WLP G +  + +   I
Sbjct: 318 KRLDEYLNMLEE----AKKRDHRLLGSNLQLFFFDSNVSPGSCFWLPAGARLYNKLMDFI 373

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           R E       E+  P + S DLW  SG Y +Y + M    D  +K     P +      +
Sbjct: 374 RNEYRIREFTEVITPNIFSCDLWKTSGHYFAYKENMFIF-DVEEKEWGLKPMNCPGHCVM 432

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+    SYR LP       +  R+E      G+ R R F   DA+ F  TPE  +    K
Sbjct: 433 FKHMNPSYRQLPIRLADFGVLHRNEFSGALNGLTRVRRFQQDDAHIF-CTPEQIQEEVFK 491

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  I+ +LG     +   + P     + E    A+                 P + 
Sbjct: 492 ALDFLFFIYGQLGFTF-DLFLSTMPKEHLGTEEQWKEAENALKSALDKTGRDWKLNPGDG 550

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I +             T  +  +       + +       E  +     +  + 
Sbjct: 551 AFYGPKIDIMLWDALKRQHQCGTIQLDFQLPIRFNLQYRTDENISEESTNQEQPPSHQNA 610

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +       G    V +    +G++  ++AVI     GK   W   ++P +  +++I  
Sbjct: 611 DQNPDNSLKQGYRRPVIIHRAILGSVERMSAVILEHTGGKLPFW---LSPRQAIVLSI-- 665

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   +  + +   L + G DV  D     I  +   + LL +   +++G     D KV
Sbjct: 666 -SEKTVEYAKSVERELCRRGFDVSGDYSAATINKKIRESQLLQWNYMLVIGENEARDKKV 724

Query: 417 EIKHRLTGI-REDMSLEEVI 435
            ++ R T I +E ++L+++I
Sbjct: 725 TLRCRDTTIPQELLTLDQLI 744


>gi|225849003|ref|YP_002729167.1| prolyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644474|gb|ACN99524.1| prolyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 563

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/275 (40%), Positives = 162/275 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+YF+P L+ENP +A++ SH  ++R G I   + GIY +LPLG + L  +  IIR+ 
Sbjct: 1   MLASRYFMPTLKENPSEAQVPSHIYLIRGGFIRSLAAGIYEYLPLGFRVLKKIENIIRKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P L  A+LW E+GR+D YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDEAGALELLLPILTPAELWKETGRWDVYGKELFRLKDRKDADFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YSFD++ E +  +Y  M  +
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYSFDVSEEDAIKTYEVMKET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF  L L  + + A+ G IGG  SHEF+V   +GE  +   ++              
Sbjct: 181 YHKIFQDLKLDYLMVEADVGAIGGKFSHEFVVKVPSGEAHIVYCENCGYAANVEAAKFHH 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + + ++           S V     F +LP  K
Sbjct: 241 HKLPVENLKPLEKVYTPNVSSVEEVAKFLNLPTEK 275



 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 126/251 (50%), Gaps = 18/251 (7%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +    GP+G DL     + AD      +  K+  +F + +   D+  I    ++     
Sbjct: 326 IVEGFVGPMGLDL----PIYAD------YSIKELYNFVVGANEKDYHYI----NVNLGRD 371

Query: 254 APYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                  D+   K  D  P  K       G+EVGHIF  GTKYS  M A F   DGK+  
Sbjct: 372 VKVEEFYDLATAKEGDPCPVCKNPLKETTGLEVGHIFLLGTKYSQAMKAYFTDKDGKEKP 431

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R+++A++E  HD KGIIWPD VAPF + ++ +   D+    A  +IY +
Sbjct: 432 IIMGCYGIGVSRLISAIVEQYHDDKGIIWPDVVAPFDLHILVLNVKDEKSLKAGFEIYEK 491

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMS 430
             + G DV  D+     GS+F  ADL+G P ++++G K +++ KVE + R     ++ + 
Sbjct: 492 AKRQGLDVLLDERDISPGSKFKDADLIGIPNRIVIG-KSLNEGKVEYQRRDKVEEKQLVD 550

Query: 431 LEEVINYASHR 441
           L E+ N+ +  
Sbjct: 551 LLEIDNFLNSL 561


>gi|150015183|ref|YP_001307437.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901648|gb|ABR32481.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 643

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 159/446 (35%), Gaps = 40/446 (8%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL  L+E   RD      +L L T       +G+   +P G K +  +   + +E+ + G
Sbjct: 229 FLEALEEAKKRDHNKLGRELKLFT-TDENVGQGLPLLMPKGAKIVQLLQRWVEDEEEKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M  L D   +D+     P        I+ +   
Sbjct: 288 YLLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPFQYTIYNAEQH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    FR+E      G++R R+F + D +   +TPE  +  +  +     
Sbjct: 348 SYRDLPLRYGETSTLFRNEASGEMHGLIRVRQFTLADGHLV-VTPEQLEEEFKGVLELIQ 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG+        S               D   T+ + +             +  D 
Sbjct: 407 YLMGTLGIAEKITYRFSK-------------WDPNNTEKYINDPDAWNKTQDTMRNILDH 453

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           +++N +               +E  F     + +      +   +F     ++L      
Sbjct: 454 LNINYVEAD------------DEAAFYGPKLDLQFRNVHGKEDTLFTVQIDFALAERFDM 501

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++   DG K     +    IG      A++   + G    W   ++P +  ++ I     
Sbjct: 502 SYVDKDGEKKRPYIIHRSSIGCYERTLAMLIEEYAGAFPTW---LSPVQAKVLPI---SD 555

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  E +   L   G  V  D   E+IG +   A L   P  ++VG K  ++++V ++
Sbjct: 556 KYNDYAEAVTKALKNKGIRVETDYRAEKIGYKIREARLERTPYILVVGEKEAANNEVSVR 615

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       + L+  I        N 
Sbjct: 616 SRKNDDEGAVKLDAFIERIVKEIENK 641


>gi|15616745|ref|NP_239957.1| threonyl-tRNA synthetase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11134938|sp|P57225|SYT_BUCAI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25292947|pir||C84944 threonine-tRNA ligase (EC 6.1.1.3) [imported] - Buchnera sp.
           (strain APS)
 gi|10038808|dbj|BAB12843.1| threonyl-tRNA synthetase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 642

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 151/433 (34%), Gaps = 45/433 (10%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           + E   H+ +   L+   + + S G+  W   G    + +   +R +       E+  P 
Sbjct: 238 ELEKRDHRKIGKFLQLYHMQEESPGMIFWHNKGWIIFNELQNFVRVKLKEYKYEEVKTPL 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    +W +SG +D+Y   +      + +     P +      IF S +KSYR+LP    
Sbjct: 298 LIDKLIWKQSGHWDNYKNAIFTTLSEH-REYCIKPMNCPGHVQIFNSRLKSYRDLPIRMA 356

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F  T E  +   N        ++     K 
Sbjct: 357 EFGSCHRNEPSGSLHGLMRVRNFTQDDAHIF-CTREQVRSEINDCIKMIYDLYSTFHFKK 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + P     +      ++                      D  D++  N +  ++
Sbjct: 416 ILVKLSTRPEKRIGTDSLWNESEK---------------------DLSDMLIENHLSFEY 454

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKD 309
            +   A      E +       +    R  + G I   FY   + S   S      + K 
Sbjct: 455 QSGEGAFYGPKIEFIL------QDSLDRNWQCGTIQLDFYLPLRLS---SFYINEKNEKK 505

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++     ++     G    W   ++P ++ +I+I           ++++
Sbjct: 506 VPVIIHRAILGSIERFIGILIEECSGNLPTW---LSPVQVVIISITDISSG---YVKELF 559

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            + S V   +  D   E+IG +     L   P  +I G K  S  K+ +++R       +
Sbjct: 560 KKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGHNFGMI 619

Query: 430 SLEEVINYASHRF 442
            ++  I       
Sbjct: 620 DVDFFIKKLQKEI 632


>gi|291277468|ref|YP_003517240.1| prolyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964662|emb|CBG40517.1| prolyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 577

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 116/231 (50%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+ENP+DA + SH+ ++R G I Q   GIY++LPLG+K L+ ++ IIREE
Sbjct: 1   MRFSKYFIPTLKENPKDAVLKSHQYLVRGGFIEQIGSGIYNFLPLGKKVLEKISQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM+   +  ++LW +SGRY+ YGKE+LR  DR +   + GPT EE +T++ ++
Sbjct: 61  MNEAGALEMAAGFVVPSELWKQSGRYEKYGKELLRFKDRRENEFVLGPTCEEALTNLAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP  FYQI LKFRDE+RPRFG+MR REF+MKDAYSF    E     +  M  +
Sbjct: 121 LIKSYKSLPLNFYQIHLKFRDEVRPRFGLMRGREFIMKDAYSFHANFEDLDREFENMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A+SG IGG  S EF+VLAD GE  +   ++     
Sbjct: 181 YCRIFTRLGLDFRVVDADSGAIGGSGSKEFMVLADCGEDIIVVCENCDYAA 231



 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 3/227 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG   +   ++  D        +  D   +   +  +     A           +  + K
Sbjct: 354 TGAKWIIFDEELRDERDLICGANERDYHFVGVDLSTFEGLVYADLVNVQAGDVCTCCDGK 413

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIEVGHIF  GTKYS  M A F   +GK     MG YGIG  R++ A++E   D 
Sbjct: 414 LTHKKGIEVGHIFKLGTKYSQAMQAVFLDQNGKSQAFVMGCYGIGVSRLLPAILEQKSDA 473

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W  + APFK+ +I     +    +  +++Y  L + G DV  DD  E+ G +    
Sbjct: 474 LGCVWSSTTAPFKVVIIPSNKKNPSEVEFSQRLYENLLQRGVDVLLDDRDERFGFKMKDF 533

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +L+GF   ++VG K +   +VEI  R    ++ +S +  I     RF
Sbjct: 534 ELIGFEFAIVVG-KELEGGRVEIFEREGMQKQVVSAD--ITQICARF 577


>gi|108758923|ref|YP_631780.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|122981032|sp|Q1D6E3|SYT_MYXXD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108462803|gb|ABF87988.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 642

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 143/449 (31%), Gaps = 52/449 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   I +   RD      +L L     H +S G   W P G      ++  +R+  
Sbjct: 233 QLAEYLTRIEESKKRDHRKLGKELDLF--HFHPYSPGSAFWTPKGTTLYTTLSNWMRQLT 290

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFR 119
              G +E+  P + +  LW  SG +  Y + M  + D    +      P +       + 
Sbjct: 291 QNDGYVEIKTPLMFNKGLWETSGHWGKYKENMFLVLDSESGEHDFSLKPMNCPSHHLFYG 350

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
               SYR+LP  ++   +  R+E      G+ R R+F   DA+ +  T         +  
Sbjct: 351 FKKHSYRDLPLRYHTQDVLHRNEAAGSLGGLTRVRQFAQDDAHIY-CTEAQITDEVRRFV 409

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  +GL    ++  + P            A+ G      S        P +   
Sbjct: 410 KLLDHVYKAVGLTY-AVKLSTRPEQRLGDDSLWDRAEGGLKAALESLGLEYELAPGDGAF 468

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYS 295
           +   I                                        +G  +  GT    Y 
Sbjct: 469 YGPKIDFAVSDS---------------------------------IGRRWQLGTMQLDYL 495

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            P     T+ G D  +H  V +     G+     A++     G    W   +AP +  L+
Sbjct: 496 APERFDLTYVGEDNAEHRPVVLHRAIFGSFERFTAILIEHFAGAFPAW---LAPIQAVLV 552

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +        D   K+   L   G  V +D+ G  + ++   A L   P  ++VG   VS
Sbjct: 553 TVA---DRQNDYARKVRDSLRAKGYRVEFDERGLSMNAKIREAQLQKVPFTLVVGDNEVS 609

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
              V  +       + M + +     +  
Sbjct: 610 GEGVSPRRYGGEDLKTMKVTDFEALLAKE 638


>gi|315924324|ref|ZP_07920547.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622395|gb|EFV02353.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 644

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 157/441 (35%), Gaps = 44/441 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L    +   + G+  WLP G K  + +    R+E  
Sbjct: 227 LDEHLAKLEEAQKRDHRKLGPQLDLF--FLDDTAPGMPYWLPKGWKLFNTLLEFWRDEHE 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+S P +    LW +SG +D Y   M  +    ++     P +      +++   
Sbjct: 285 KRGYQEISSPQINYNKLWRQSGHWDHYKDNMFVIPVSENEIYGVKPMNCPNAIVVYKRKT 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP       +  R E   +  G++R + F   D+++F +T +      N++    
Sbjct: 345 RSYRDLPLRLSDCDVLHRKEKSGQLHGLLRVQMFRQDDSHNF-ITEDQIYDEINEILDIA 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   GL+  P    + P            A+    ++                D   
Sbjct: 404 DLFYGIFGLEYRP-ELSTRPADFMGDIALWDKAEAALKEIL---------------DKRY 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPM 298
                 + E   A Y    D+  +   D          R  ++G I   F     +    
Sbjct: 448 GEGGYDVNEGDGAFYGPKIDIMMKDALD----------RTWQMGTIQVDFQLPRNF---- 493

Query: 299 SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DG+    V +     G++     ++  S  GK   W   ++P ++ ++ ++  
Sbjct: 494 DLTYMDKDGELKVPVMIHRVIYGSLERFIGLLIESTAGKFPFW---LSPVQVGIVPVR-- 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  + I  +L      V  DD   Q+G + +       P  +IVG K    + V 
Sbjct: 549 -EFHNEYAQSIADQLRDHRIRVEVDDRDAQMGGKISKFRKELLPYILIVGDKEKEANAVS 607

Query: 418 IKHRLTGIREDMSLEEVINYA 438
           ++ R      D+ ++  +   
Sbjct: 608 VRIRDGVQLHDIPVDAFLKVV 628


>gi|302554518|ref|ZP_07306860.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302472136|gb|EFL35229.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 566

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/230 (42%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLLAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P +   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAVGAQEVLLPAILPREPYEATGRWEEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQNKYRDEARPRAGILRGREFLMKDSYSFDTDDEGLAQSYALHREAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +IF RLGL      A +G +GG  S EF+  A+ GE       +     
Sbjct: 188 QKIFARLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDTFADCPNCDFAA 237



 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 6/178 (3%)

Query: 266 KLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P+     V  R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R
Sbjct: 392 QEGDPCPKCGTGLVLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSR 451

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E S D KG+ WP  VAP  + ++   A   +  +    I  +L+  G  V  DD
Sbjct: 452 AVAALAEQSADDKGLCWPKEVAPADVHVV--AAGKALQTELALDISGKLAAAGVRVLVDD 509

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             G   G +F  ++L+G P  ++ G +  +D  VE+K R TG RE++++EE +   + 
Sbjct: 510 RAGVSPGVKFTDSELIGVPQILVAGRR-AADGVVELKDRRTGEREELTVEEAVARLTA 566


>gi|254392125|ref|ZP_05007314.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294815425|ref|ZP_06774068.1| Prolyl-tRNA synthetase 1 [Streptomyces clavuligerus ATCC 27064]
 gi|326443777|ref|ZP_08218511.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197705801|gb|EDY51613.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294328024|gb|EFG09667.1| Prolyl-tRNA synthetase 1 [Streptomyces clavuligerus ATCC 27064]
          Length = 566

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/230 (43%), Positives = 140/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K L+NV  ++REE 
Sbjct: 7   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLENVTRVVREEM 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 67  DAIGAQEVLLPALLPKEPYEITGRWDEYGAELFRLKDRKGAEYLLGPTHEEIFTQLVKDQ 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF MKD+YSFD T EG   SY     +Y
Sbjct: 127 CSSYKDLPVILYQIQTKYRDEARPRSGILRGREFQMKDSYSFDTTDEGLAESYALHREAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +RIF RLGL    + A SG +GG  S EF+  A  GE             
Sbjct: 187 IRIFRRLGLDHRIVSAVSGAMGGSASEEFLAPAAAGEDTFVHCPSCDYAA 236



 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 4/172 (2%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+
Sbjct: 396 CPKCGTGLKLDRAIEIGHIFQLGRKYADAFQLDVLGQNGKPTRVTMGSYGIGVSRAVAAL 455

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
            E + D KG+ WP  +AP  + ++   A   V  +   ++  +L+  G  V  D+  G  
Sbjct: 456 AEQTADEKGLCWPAEIAPADVHVV--AAGKAVQIELALEVADQLAAAGLRVLVDERPGVS 513

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            G +F  A+L+G P  ++ G +      VE+K R TG RE++ + E +    
Sbjct: 514 PGVKFTDAELIGVPTILVAGRRSAE-GVVELKDRRTGEREELPVAEAVARLR 564


>gi|330685674|gb|EGG97315.1| proline--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 567

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MEKVDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +     
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNESDYAA 231



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 2/162 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E  HD  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSETMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQHHDDNGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI I    +  R+   ++Y +L     DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLITINPKKEDQRELGNQLYDQLMN-NYDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           P++V+VG +   +  VE+K R TG  E++ ++++ NY +  +
Sbjct: 523 PIRVVVGKR-AEEGIVEVKQRSTGESEEIHIDDLENYINDLY 563


>gi|87303299|ref|ZP_01086092.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
 gi|87282194|gb|EAQ74155.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
          Length = 603

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 143/428 (33%), Gaps = 41/428 (9%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   +   ++A    H+ +   L+   I  +   G+  W P G +    +    R+    
Sbjct: 182 LAEYKHRKQEALRRDHRRLGTDLQLFSIEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFA 241

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    LW  SG  D Y + M      +++     P +       + S ++
Sbjct: 242 AGYDLLYTPHVADLSLWKTSGHLDFYSESMFGPMQVDERQYQLKPMNCPFHVLTYASTLR 301

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + ++   +R E      G+MR R F   DA+ F L PE        +     
Sbjct: 302 SYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHIFCL-PEQIGDEILGVLNLTE 360

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I       +  +   + P           LA TG  +    K +               
Sbjct: 361 TILSSFDFHTYEVNLSTRPEKSIGDDAVWDLATTGLIEALDRKGWPYKIDEGGG------ 414

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + S   ++    F    ++       +
Sbjct: 415 --------------AFYGPKIDIKIEDAIGRMWQCSTIQLD----FNLPERF----DLHY 452

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG +   + +     G++     ++  ++ G    W   +AP ++ L+ +       
Sbjct: 453 VAADGSRQRPIMIHRAIFGSLERFFGIMVENYAGDFPFW---LAPEQVRLLPVT---DEV 506

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++  +L   G     D  G+++G      +    P+  ++G+K      V ++ R
Sbjct: 507 IPYAEEVLGQLRSAGVRAAIDRSGDRLGKLIRHGEQQKIPVLAVIGAKEAEQGSVSLRSR 566

Query: 422 LTGIREDM 429
             G    +
Sbjct: 567 RDGDLGSV 574


>gi|296110429|ref|YP_003620810.1| prolyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295831960|gb|ADG39841.1| prolyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 571

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/240 (42%), Positives = 146/240 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVAAGMFSYLPLAKRVLNKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A EM VP +  A+LW +SGRY +YG ++ +  +R D+  I GPTHEE  T +   
Sbjct: 61  MANIDANEMLVPEVLPAELWQKSGRYATYGPDLYKFKNRQDRDFILGPTHEETYTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDQTFHAMENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF R+G+    +  ++G +GG  S EF   A  GE  +  S             DF 
Sbjct: 181 YINIFDRIGISYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSDSTDYAANLEMAKDFY 240



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 1/182 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +   +  +GIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+
Sbjct: 391 EGDLSVDGKGHLIFTKGIEIGHIFKLGTRYSKAMGAQVLDENGRQTDMIMGSYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A+ E   D  G++WP S+APF + ++ +   D        ++   L   G +V  DD 
Sbjct: 451 LSAIAEQKADDLGLVWPASIAPFDVHIVPVNMKDDEQSRVANQLETLLMAQGLEVLVDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA ADL+G P+++ VG K   D  VE+K R +    +M + EV++  S   + 
Sbjct: 511 KERAGVKFADADLIGLPIRITVGKKAGED-IVEVKVRASNTNIEMRMSEVVDSVSVLLNG 569

Query: 445 NR 446
           ++
Sbjct: 570 DK 571


>gi|314936576|ref|ZP_07843923.1| proline--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313655195|gb|EFS18940.1| proline--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 566

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L++++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPSEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNHISRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MENIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y +M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQEMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++     
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGHHTHEFMALSEIGEDTIVYSENSDYAA 231



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           KD  +  I +    +  I +                 +  E L D     K     GIEV
Sbjct: 350 KDLNNIVIGANEDGYHYINANVERDFNIDEYGDFRFILEGEPLSDGSGNAKFAE--GIEV 407

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G +F  GTKYS  M+A F    GK   + MG YGIG  R ++A++E ++D  GIIWP SV
Sbjct: 408 GQVFKLGTKYSEAMNAKFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIWPKSV 467

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            PF + LI I    +   +  +K+Y+ L     DV +DD  E+ G +F  ADL+G P+++
Sbjct: 468 TPFDLHLITINPKKEEQLELGDKLYSELQSK-YDVLYDDRKERAGVKFNDADLIGLPIRI 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +VG K  S+  VE+K R TG  E++ + E+ N+ +  +  
Sbjct: 527 VVG-KNASEGIVEVKVRQTGESEEVHINELDNHIASLYEK 565


>gi|303232756|ref|ZP_07319441.1| proline--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302481242|gb|EFL44317.1| proline--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 574

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 172/306 (56%), Gaps = 21/306 (6%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ + P L+ENP DA+IASH+L+ R GMI + + G+Y++LPL  +++  +  IIR+E  
Sbjct: 7   MSRLYAPTLKENPVDADIASHRLLCRAGMIRKAASGLYTYLPLAWRSILKIEGIIRDEME 66

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                EM  P L SA+LW +SGR+D YG E++RL DR+D     GPTHEE   D+ RS +
Sbjct: 67  AIDCQEMLTPILTSAELWHQSGRWDVYGPELMRLTDRHDHEYALGPTHEETYVDLVRSEL 126

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SY+ LP T Y IQ KFRDE RPRFG+MRSREF+MKDAYSF  T E  +  Y+    +Y 
Sbjct: 127 RSYKQLPVTLYHIQDKFRDERRPRFGLMRSREFIMKDAYSFCATQESLQQCYDDQKQAYA 186

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +  R G++++P+ A+SG IGGD S EF+ LAD GE ++                 + D 
Sbjct: 187 NVARRCGIRALPVVADSGQIGGDTSVEFMALADAGEAELV----------------YCDS 230

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +  E  T   A  +           P+   +     ++G +    T+ +L + A  
Sbjct: 231 CGYAADAEAATTRIAIENTTQTTLKKVHTPQCSTIDDLAAQLG-VDALQTRKALALVA-- 287

Query: 303 KGADGK 308
              DG+
Sbjct: 288 --EDGR 291



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 71/184 (38%), Positives = 104/184 (56%), Gaps = 2/184 (1%)

Query: 268 FDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            D  P       SARGIE+  +F  GTKYS  M ATF   DG +    MG YGIG  R +
Sbjct: 390 GDGCPRCAASLKSARGIEISQVFQLGTKYSSAMGATFMDEDGTEKPFIMGCYGIGVSRTL 449

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AAV+E  +D  GIIWP SVAP+++ +I +  +D V       I  +L+  G +V  DD  
Sbjct: 450 AAVVEQHYDDHGIIWPISVAPYEVEVIALDTNDDVIWPQATAIAEKLTARGIEVIVDDRE 509

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + G +F  ADL+GFP QV+ G K +    VE+K R  G R +++L+ +++    R +++
Sbjct: 510 LRPGVKFNDADLMGFPYQVVCGKKALERGCVELKCRADGSRVEVALDAIVSELEQRIAHD 569

Query: 446 RPVL 449
           + +L
Sbjct: 570 KELL 573


>gi|88855365|ref|ZP_01130029.1| prolyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88815272|gb|EAR25130.1| prolyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 593

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 140/234 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ASH+L++R G I + + G+++WLPLG K    + AIIREE 
Sbjct: 4   RLSQLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGVFAWLPLGLKVRRKIEAIIREEL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR+  YG  + RL DR D   +  PTHEEV T + +  
Sbjct: 64  ESFGAQEVLFPALLPREPYELTGRWTEYGDGIFRLKDRKDADYLLAPTHEEVFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKD+YSFD T  G   SY +   +Y
Sbjct: 124 YSSYKDLPLSLYQIQDKYRDEARPRAGLLRGREFSMKDSYSFDYTDAGLDLSYQQHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            RIF RLGL+ + + A++G +GG  S EF+     GE     +       + + 
Sbjct: 184 ERIFTRLGLEYVVVSADAGAMGGSKSEEFLHPTPIGEDTFVRTAGGYAANVEAY 237



 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +ARG+E+GH+F  G KY+  +       +GK   V MGSYGIG  R++AA+ E+++DGKG
Sbjct: 432 TARGMEIGHVFQLGRKYAEVLGLKVLDENGKLVTVTMGSYGIGVTRLMAAIAETTNDGKG 491

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           ++WP +++PF + ++     D V  +  E +   L   G DV +DD      G +F  A+
Sbjct: 492 LLWPKNISPFDVHIVA-AGKDAVVFETAESLVTTLESAGLDVLFDDRVKVSPGVKFGDAE 550

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           LLG P  VIVG +  ++  VE+  R+T  R   ++ +V
Sbjct: 551 LLGVPKIVIVG-RDAANGMVEVWDRVTNERTSTAIADV 587


>gi|56417255|ref|YP_154329.1| threonyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|73919765|sp|Q5P9F6|SYT_ANAMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56388487|gb|AAV87074.1| threonyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 636

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 149/432 (34%), Gaps = 45/432 (10%)

Query: 14  NPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           N ++AE   H+ + +      I   + G   W   G      +   IR +  + G  E+ 
Sbjct: 236 NMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIRCKLKKHGYHEVK 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW +SG ++ + + M  + D + K +   P +      IF+S I+SY+ LP 
Sbjct: 296 TPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKIRSYKELPI 354

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  +  R+E      G+MR R F   DA+ F  T E  +    + +   + ++   G
Sbjct: 355 RMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIF-CTHEQVRDEVLRFYELLMEVYKDFG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             S+ ++    P     S E    ++    +   +          E   +   +      
Sbjct: 414 FDSVTVKLSDRPENRIGSDEIWDRSEQSLMEPMNALGVQYTINKGEGAFYGPKLEFTL-- 471

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG 307
                                    K    R  + G +      + LP  + A + G DG
Sbjct: 472 -------------------------KDSIGREWQCGTV---QLDFVLPDRLGAYYIGEDG 503

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H  V +    +G +     ++   + G    W   +AP ++ ++ +        +   
Sbjct: 504 KKHIPVIIHRAILGTIERFIGILIEHYAGNIPAW---LAPVQLEILTVSG---EVAEYAR 557

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +    S+    V  +   E I  +   A     P+  +VG     D  V ++   +G  
Sbjct: 558 DLAEMASQENVRVELNAAEENISHKIRKAIFNKVPIVWVVGKSEAGDRGVSVRRYGSGET 617

Query: 427 EDMSLEEVINYA 438
             M+  + +   
Sbjct: 618 CRMAAGKALKTL 629


>gi|315122407|ref|YP_004062896.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495809|gb|ADR52408.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 653

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 161/450 (35%), Gaps = 44/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR-TGMIH--QHSKGIYSWLPLGQKALDNVNAIIREE 60
           S+  L    +   ++E   H+ + R   + H  +   G+  W   G K    + + +R +
Sbjct: 227 SQQELTQYLDFIVESEKRDHRKIAREMDLFHTAEDGSGVIFWHQKGWKTFQTLISYMRRK 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMT 115
                  E++ P +   +LW +SG +D Y   M  +   ++     ++    P +     
Sbjct: 287 IKD-DYEEINTPQVLDQNLWKQSGHWDWYRANMFAVQCADETIKDLRSFALKPMNCPGHV 345

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +IF+  +KSYR LP    +    +R+E      G+MR R F   DA+ F  T E      
Sbjct: 346 EIFKHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF-CTKEQMFEEC 404

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            K+    + I+   G ++I ++  + P     S      A++    V  +          
Sbjct: 405 LKIHNLIVSIYKDFGFENITVKLSTRPEKRVGSDALWDDAESIMQTVLNT---------- 454

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                    S + I         A      E +       K    R  + G        +
Sbjct: 455 -----IKTSSQSKINTGILPGEGAFYGPKFEYIL------KDAIGREWQCGTT---QIDF 500

Query: 295 SLP--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +LP   +A +  +  +  H V +     G++     ++  +  G   +W   ++P +  +
Sbjct: 501 NLPHRFNAFYINSQSEKCHPVMIHRAVFGSIERFIGIMIENFKGHLPLW---LSPVQAVV 557

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             I +      +  +++ A L      +  D   E+I  +         PL +I G K  
Sbjct: 558 TTITSSS---IEYAQEVTALLKSNDLSIETDFRNEKINYKIREHSSKKIPLIIICGDKET 614

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  + I+   +   + +++ + +   +  
Sbjct: 615 QERSIVIRRLGSKTSQSLNILDAVQMITQE 644


>gi|302876555|ref|YP_003845188.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307687227|ref|ZP_07629673.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302579412|gb|ADL53424.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 566

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 116/268 (43%), Positives = 160/268 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  ++E P +AEI+SH+LMLR G++ + + G+Y+++P+G KAL  V  IIR+E
Sbjct: 1   MKLSKALMLTMREVPAEAEISSHQLMLRAGLMRKMASGVYNYMPMGLKALKKVEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E     L  A+LW ESGR+D+ G EM RL DRND+    GPTHEEV TDI R+
Sbjct: 61  MDKAGAQEFLASALIPAELWKESGRWDTMGPEMFRLKDRNDRDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   EG   SYN M+ +
Sbjct: 121 EIKSYKQLPITLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDSEGLDISYNAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  ++     A+SG +GG  S EF+V ++ GE  +             ++    
Sbjct: 181 YKNIFFRCDIECKAAEADSGAMGGSGSAEFMVKSEVGEDDIVFCSACDYAANIEKSPATA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +++    +             +     F
Sbjct: 241 EVMKKEELKNLEKIHTPNAKTIEELVSF 268



 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 1/226 (0%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            ++   ++  +        +  D    N    +             E             
Sbjct: 341 DELLVDEEVSNMYNFIVGANETDYHYTNVNYNRDFTGKVGDFRKVTEGEKCPKCGAPINI 400

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGHIF  GTKYS  M+A F   DG      MG YGIG  R +AAVIE  +D  GI
Sbjct: 401 ARGIEVGHIFKLGTKYSESMNAVFTDQDGTQKPFIMGCYGIGVNRTLAAVIEQHNDENGI 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP  VAP+++ ++     D+V     E++Y  L  +G DV  DD  E+ G +F  ADLL
Sbjct: 461 IWPLEVAPYQVIVVPAVFKDEVQMKKAEELYDALKAIGVDVILDDRNERAGIKFKDADLL 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P+++ VG K +++ +VE K R +   E ++ ++VI+     F  
Sbjct: 521 GIPMRITVGKK-IAEGEVEFKLRSSADLEVIAYDKVIDRVKEEFKK 565


>gi|228474993|ref|ZP_04059721.1| proline--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270978|gb|EEK12366.1| proline--tRNA ligase [Staphylococcus hominis SK119]
          Length = 566

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L++++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPSEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNHISRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MENIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y +M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQEMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++     
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGHHTHEFMALSEIGEDTIVYSENSDYAA 231



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           KD  +  I +    +  I +                 +  E L D     K     GIEV
Sbjct: 350 KDLNNIVIGANEDGYHYINANVERDFNIDEYGDFRFILEGEPLSDGSGNAKFAE--GIEV 407

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G +F  GTKYS  M+A F    GK   + MG YGIG  R ++A++E ++D  GIIWP SV
Sbjct: 408 GQVFKLGTKYSEAMNAKFIDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIWPKSV 467

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            PF + LI I    +   +  +K+Y+ L     DV +DD  E+ G +F  ADL+G P+++
Sbjct: 468 TPFDLHLITINPKKEEQLELGDKLYSELQSK-YDVLYDDRKERAGVKFNDADLIGLPIRI 526

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +VG K  S+  VE+K R TG  E++ + E+ N+ +  +  
Sbjct: 527 VVG-KNASEGIVEVKVRQTGESEEVHINELDNHIASLYEK 565


>gi|328957405|ref|YP_004374791.1| proline--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673729|gb|AEB29775.1| proline--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 568

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 105/240 (43%), Positives = 150/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SHK++LR G I Q S G+YS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKLFIPTLRDVPNEAEVLSHKMLLRAGYIRQISSGVYSYLPLATRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P+L   +LW ESGRY++YG++++ L DR+ +  + GPTHEE  T + R 
Sbjct: 61  FEKINAVEMLMPSLLPRELWEESGRYETYGEDLMTLQDRHGRDYLLGPTHEEAFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE RPR G++R REF+MKDAYSF  + E    +Y     +
Sbjct: 121 EITSYKRLPLSLYQIQTKFRDEKRPRSGLLRGREFIMKDAYSFHDSFESLDATYQDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    +  ++G +GG  S EF+ L+D GE  +  S            T F 
Sbjct: 181 YTRIFERCGLDFRNIIGDAGAMGGSNSKEFMALSDIGEDTIVYSDSSDYSANLEMATSFH 240



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 11/247 (4%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GP+G  +S E  VLAD            M   +   N +    +++N   +     Y 
Sbjct: 332 SIGPVG--ISEEVRVLADV-------YVQDMVNAVAGANENGYHYLNVNLNRDSRVEDYI 382

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
               V  E       +     A+GIE+GHIF  GT+YS  M+AT    +G+   V MG Y
Sbjct: 383 DLRFV-QEGELSPDGQGVLKFAKGIEIGHIFKLGTRYSESMNATVLDNNGRSIPVVMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E     +G+ WP  +AP+++ LI +        +   ++Y  L   G 
Sbjct: 442 GIGVSRLLSAITEQQSSEEGLNWPRHLAPYELHLIPVNMKADDQVNLSNELYTSLQNAGF 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E++G +F  +DL+G P+++ VG K   ++ VE+K R TG   ++  EE+I+ 
Sbjct: 502 SVLLDDRNERVGVKFKDSDLIGMPIRITVGKK-AQENIVELKLRKTGEALEVRTEELIDT 560

Query: 438 ASHRFSN 444
            +   S+
Sbjct: 561 LNILLSS 567


>gi|317054829|ref|YP_004103296.1| prolyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315447098|gb|ADU20662.1| prolyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 480

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 160/428 (37%), Gaps = 67/428 (15%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           +  +I   S KG     P G    +N+  I+       G   + +P      L   E   
Sbjct: 28  KAELIAYTSVKGCMVIRPYGYAIWENIQKILDSRFKALGHENVCMPMFIPESLLQKEKDH 87

Query: 86  YDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +     ++ +  +   PT E +  + + + + SYR+LP  + Q     R 
Sbjct: 88  VEGFAPEVAWVTHGGSEKLEDRLCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVVRW 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +RSREFL ++ ++   TPE +     +M                   A+   
Sbjct: 148 E-KTTRPFLRSREFLWQEGHTIHETPEEAIEETERMLN---------------CYAD--- 188

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                               FC KD     +    TD D      +        YA  + 
Sbjct: 189 --------------------FCEKDLAMPVVKGRKTDSDKFAGAEA-------TYAIEAL 221

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +H+               + ++ G   YFG  ++      F G D K  +    S+G+  
Sbjct: 222 MHD--------------GKALQAGTSHYFGDGFAKAFGIQFTGRDNKLAFPHQTSWGVT- 266

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+I +  D  G++ P +VAP +  ++ ++   +   +   ++Y +L   G  V  
Sbjct: 267 TRLIGAIIMTHGDDNGLVLPPAVAPIQAVIVPVQQFKEGVLEKANEVYEQLKAAGIRVKL 326

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +  G +FA  ++ G P+++ +G K + + +  I  R    +    L E++   + +
Sbjct: 327 DDSDQSPGWKFAEYEMKGVPVRIELGPKDIENGQCVIVTRHDREKTFTPLTELVETVNAK 386

Query: 442 FSNNRPVL 449
               R  +
Sbjct: 387 LEAVREGI 394


>gi|269795644|ref|YP_003315099.1| prolyl-tRNA synthetase, family II [Sanguibacter keddieii DSM 10542]
 gi|269097829|gb|ACZ22265.1| prolyl-tRNA synthetase, family II [Sanguibacter keddieii DSM 10542]
          Length = 591

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 141/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V A++REE
Sbjct: 3   LRLSTLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEAVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  +GR+  YG  + RL DR D   +  PTHEE+ T + + 
Sbjct: 63  MQAAGAQEVHFPALLPREPYEATGRWTEYGPNLFRLKDRRDNDYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T +Q+Q K+RDE RPR G++R REF+MKDAYSFD+   G + SY     +
Sbjct: 123 LYSSYKDLPVTLFQVQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLEASYLVQRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y +IF RLGL+ + + A SG +GG  S EF+     GE     S       + +
Sbjct: 183 YEKIFTRLGLEYVVVAATSGAMGGSRSEEFLHPTAIGEDTFVRSPGGYAANVEA 236



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 29/178 (16%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +       +GK   V MGSYGIG  R +AA+ E++HD KG+ 
Sbjct: 427 RGIEIGHIFQLGRKYADALGLKVLDVNGKQVTVTMGSYGIGVTRALAALAEANHDEKGLA 486

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVAD-- 396
           WP  VAP  + ++     D     A E I   LS    +V +DD  +   G +FA A+  
Sbjct: 487 WPAHVAPAHVHVVA-TGKDPAVFAAAETIAQELSAQRVEVLYDDRPKVSPGVKFADAELL 545

Query: 397 -----------LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                      L              +D  VE++ R+ G    + + E          
Sbjct: 546 GVPLVVVVGRGL--------------ADGVVEVRPRVGGEAVSVPVAEAAQRVVEMVE 589


>gi|320165002|gb|EFW41901.1| Tarsl2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 777

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/500 (16%), Positives = 167/500 (33%), Gaps = 100/500 (20%)

Query: 10  ILQE---NPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L+E      +A++  H+L+    +  M H +S G    LP G K +  +   IR     
Sbjct: 312 MLKEWVTAREEAKLRDHRLIGAAQQLFMFHPYSPGSAFMLPHGMKIISRLQEYIRLAYIH 371

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------------------DR 99
            G  E+S P + S +LW  SG    Y ++M  +                         D 
Sbjct: 372 YGYQEVSTPIVYSKELWETSGHLQHYAQDMFAVTGGLTPAAPAAGAAAGAAGHSHHHADS 431

Query: 100 N---DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
           +   D      P +      IF+    SYR LP          R+E +    G+ R R F
Sbjct: 432 DASSDATQALKPMNCPGHCLIFQRKHYSYRELPIRLADFSPLHRNEAKGALSGLTRVRRF 491

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              DA+ F  TPE  +     +      ++ RLG     ++  + P     S E    A+
Sbjct: 492 HQDDAHIF-CTPEQIQAEILNVLGFVREVYGRLGFSEFTLKLSTRPESFVGSIEQWDYAE 550

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           +            ++ +   +  F       +I                    D++    
Sbjct: 551 SCLKDALQQTCGSNWTLNPGDGAFYGPKIDITIR-------------------DAIGRQH 591

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHD 334
           + +   ++    F    ++       +  A+ + H  V +    +G++  + A++  +  
Sbjct: 592 QTATVQLD----FQLPQRF----GLRYFDANQQAHTPVMIHRAVLGSLERMFAILIENTA 643

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD---------------- 378
           G    WP  ++P ++++ ++   D    +   ++  +L KV                   
Sbjct: 644 G---RWPLWLSPRQVAVCSV---DPSVNEYAAEVCKQLEKVSLRLPGSVFEVKNNVTTDS 697

Query: 379 ---------------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                          V  D    ++  +   A +  F   V+ G++  +D  + ++ R  
Sbjct: 698 SAATPNGSSSAFALQVEADLSDNRLSKKIRDAQVSQFNYIVVTGAREAADRTLNVRDRTG 757

Query: 424 GIREDMSLEEVINYASHRFS 443
                MS ++ +     + +
Sbjct: 758 AQLGTMSFDKFVQLLHDQMA 777


>gi|116490538|ref|YP_810082.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Oenococcus oeni
           PSU-1]
 gi|116091263|gb|ABJ56417.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Oenococcus oeni
           PSU-1]
          Length = 663

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 169/448 (37%), Gaps = 40/448 (8%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   ++   + +   H+ + +   +     +   G+  WLP G      +   + E++ +
Sbjct: 233 LEAQKKALEERKERDHRTIGKQMELFFTNPEIGAGLPVWLPNGAAIRRTIEDYLVEKERQ 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G + +  P + + DL+  SG +D Y  +M   +   + + +   P +     +IF    
Sbjct: 293 NGYMNVYTPVVSNLDLYKRSGHWDHYRDDMFPAMTADDGEQLELRPMNCPSHIEIFEHEP 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP+   +     R E      G+ R RE  + D ++    PE  +  +  +    
Sbjct: 353 RSYRDLPYRIAEFGQMHRWEKSGALTGLSRVREMTLNDGHTVVA-PEQVEPEFKGILQLI 411

Query: 182 LRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             ++H  G        R                  D   T+ +   D M     +     
Sbjct: 412 RDVYHDFGFTDQDYRFRLSYR--------------DPKNTKKYYDDDAMWEHAQAALKRA 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + L+    +     A      + +   +L   + +S   ++    F    ++     
Sbjct: 458 MDDMGLD--YFEAEGEAAFYGPKLDIQFKTALGNEETMSTIQLD----FLLPERF----D 507

Query: 300 ATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DGKDH   +   G +G M    A +   + G+   W   +AP +  +I +    
Sbjct: 508 MKYTGEDGKDHRPVLIHRGVVGTMERFVAFLIEKYKGQFPTW---LAPVQAVVIPVNYG- 563

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVE 417
               D    IY++L K G  +  D+  E++G     A + L  P  ++VG + + D+ V 
Sbjct: 564 -AHGDYARNIYSKLMKDGRRIKLDNRDEKLGYLIRDAQVNLKTPYILVVGDQELRDNSVT 622

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R +   ++M ++E     +   +N 
Sbjct: 623 VRFRGSDQTKEMKIDEFEEMINDDVANY 650


>gi|326201675|ref|ZP_08191546.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988275|gb|EGD49100.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 645

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 162/447 (36%), Gaps = 35/447 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T  + +  +G+   +P G + +  +   + +E+ 
Sbjct: 228 LEEYVTKLEEAKKRDHNKLGRELELFT-TVEEIGQGLPLLMPKGARIVQTLQRFVEDEEE 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
           R G +    P +  +DL+  SG +  Y   M  L D   +++ M   P        I+ +
Sbjct: 287 RRGYVLTKTPFMAKSDLYKLSGHWQHYKDGMFLLGDEEKDEEVMALRPMTCPFQFMIYNT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +  
Sbjct: 347 KLHSYRDLPIRYGETSTLFRNEASGEMHGLIRVRQFTISEGHLV-CTPEQLEDEFKGVVD 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +   LG++             D+++ F    D    + +   +     +  +    
Sbjct: 406 LIKFMMETLGIEE------------DVTYRFS-KWDPKNKEKYIGNEEDWENVQGQMRTI 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + L+   ++     A      + +  +   +   +    ++               S
Sbjct: 453 LDHLKLD--YKEAEGEAAFYGPKLDIQCKNVHGKEDTIITVQVDFALAERL--------S 502

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   +  K H   +    IG      A++   + G    W   + P +  ++ +    
Sbjct: 503 MVYVDKNNEKKHPYIIHRTSIGCYERTLAMLIEKYAGAFPTW---LCPVQAKILPLVDK- 558

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+   L   G  V  D   E+IG +   A +   P  +++G K +  + V +
Sbjct: 559 --HHDFAQKVAQMLRDKGVKVEVDTRNEKIGYKIREAQMEKIPYMLVIGDKEMESNAVSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G    MS E+ ++         
Sbjct: 617 RSRKEGDLGAMSAEQFVDKIVEEIRTR 643


>gi|33519811|ref|NP_878643.1| threonyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|33504156|emb|CAD83418.1| threonyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 410

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 159/449 (35%), Gaps = 50/449 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++++      +    D    SH+L L    + + + G+  W   G      +   IR++
Sbjct: 1   MKKNQ------KIKKYDHRNLSHQLDLY--HLQEDAPGMVFWHVNGWTIFQELKNFIRKK 52

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  PT+    LW ++G +D+Y + +    D  ++     P +      IF  
Sbjct: 53  LQQYQYQEVKSPTMIDRVLWKKTGHWDNYYEHIFT-TDSENRKYCIKPMNCPGHIQIFNH 111

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +K+Y++LP    +     R+EL     G+MR REF   DA+ F    +     Y+ + +
Sbjct: 112 GLKTYKDLPIRMAEFGSCHRNELSGSLHGLMRIREFTQDDAHIFCALTQIPNELYHCIKM 171

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y  I+H    K I ++  + P           +A+   + V    +      P++   +
Sbjct: 172 MY-DIYHVFNFKKIIVKLSTRPKKRIGEDSVWDVAEQYLSDVLKQNNIEFTYQPNDGAFY 230

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I    +                               R  + G I      ++LP  
Sbjct: 231 GPKIEFILLD---------------------------SLKRSWQCGTI---QLDFTLPKL 260

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + + +   +      V +    +G++     VI   + G    W   +AP +I ++N+  
Sbjct: 261 LESKYIDNNNSYQTPVIIHRAVLGSIERFIGVITEEYLGFFPTW---LAPIQIIIMNVTD 317

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++  +LS     V  D   E I  +     +   P  +I G+  ++   V
Sbjct: 318 G---QISYVIELAKKLSNKNFRVKIDLRNETISFKIRSHIIHRIPYMLICGNAEMNQKTV 374

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+       ++  ++  I    H   N 
Sbjct: 375 SIRTFRGKNFKNYKIDIFIEKLQHEIYNY 403


>gi|239636259|ref|ZP_04677261.1| prolyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239597614|gb|EEQ80109.1| prolyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 567

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MEKVDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S +     
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSNESDYAA 231



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 2/162 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E  HD  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQHHDDNGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI I    +  R   +++Y +L     DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLITINPKKEEQRKLGDQLYDQLMN-NYDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           PL+V+VG +   +  VE+K R TG  E++ ++++ NY    +
Sbjct: 523 PLRVVVGKR-AEEGIVEVKQRSTGESEEIHIDDLENYIKDLY 563


>gi|154686074|ref|YP_001421235.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166980099|sp|A7Z4S8|SYP_BACA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154351925|gb|ABS74004.1| ProS [Bacillus amyloliquefaciens FZB42]
          Length = 564

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 108/235 (45%), Positives = 151/235 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SHKL+LR G I Q++ G+YS++PL  + + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHKLLLRAGFIRQNTSGVYSYMPLAYRVIQNIQKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLEETYQNMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S           
Sbjct: 181 YSSIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYSDGSSYAANTEM 235



 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G+ +++  +            +  D    N  +E+  +  A   D+   +  D  P+ K 
Sbjct: 340 GDIEIYADQAVKVMVNAVSGANEKDRHYRNVNIERDASVKAYA-DLRIIQEGDPSPDGKG 398

Query: 277 VSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                 GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD
Sbjct: 399 TIRFAEGIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGIGVSRTLSAIAEQHHD 458

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG+IWP SVAP+ + ++ +   ++  ++  E++Y +    G +V +DD  E+ G +FA 
Sbjct: 459 EKGLIWPKSVAPYDLHILALNMKNEAQKELAEQLYGKFQAEGYEVLYDDRAERAGVKFAD 518

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +DL+G P+++ VG +   +  VE+K R TG   ++S++E+  +   +
Sbjct: 519 SDLIGLPIRITVGKR-ADEGIVEVKIRKTGESAEVSVDELSEFIKTK 564


>gi|118586378|ref|ZP_01543828.1| threonyl-tRNA synthetase 1 [Oenococcus oeni ATCC BAA-1163]
 gi|118433195|gb|EAV39911.1| threonyl-tRNA synthetase 1 [Oenococcus oeni ATCC BAA-1163]
          Length = 663

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 169/448 (37%), Gaps = 40/448 (8%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   ++   + +   H+ + +   +     +   G+  WLP G      +   + E++ +
Sbjct: 233 LEAQKKALEERKERDHRTIGKQMELFFTNPEIGAGLPVWLPNGAAIRRTIEDYLVEKERQ 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G + +  P + + DL+  SG +D Y  +M   +   + + +   P +     +IF    
Sbjct: 293 NGYMNVYTPVVSNLDLYKRSGHWDHYRDDMFPAMTANDGEQLELRPMNCPSHIEIFEHEP 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP+   +     R E      G+ R RE  + D ++    PE  +  +  +    
Sbjct: 353 RSYRDLPYRIAEFGQMHRWEKSGALTGLSRVREMTLNDGHTVVA-PEQVEPEFKGILQLI 411

Query: 182 LRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             ++H  G        R                  D   T+ +   D M     +     
Sbjct: 412 RDVYHDFGFTDQDYRFRLSYR--------------DPKNTKKYYDDDAMWEHAQAALKRA 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + L+    +     A      + +   +L   + +S   ++    F    ++     
Sbjct: 458 MDDMGLD--YFEAEGEAAFYGPKLDIQFKTALGNEETMSTIQLD----FLLPERF----D 507

Query: 300 ATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DGKDH   +   G +G M    A +   + G+   W   +AP +  +I +    
Sbjct: 508 MKYTGEDGKDHRPVLIHRGVVGTMERFVAFLIEKYKGQFPTW---LAPVQAVVIPVNYG- 563

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVE 417
               D    IY++L K G  +  D+  E++G     A + L  P  ++VG + + D+ V 
Sbjct: 564 -AHGDYARNIYSKLMKDGRRIKLDNRDEKLGYLIRDAQVNLKTPYILVVGDQELRDNSVT 622

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R +   ++M ++E     +   +N 
Sbjct: 623 VRFRGSDQTKEMKIDEFEEMINDDVANY 650


>gi|331698443|ref|YP_004334682.1| Prolyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326953132|gb|AEA26829.1| Prolyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 577

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 115/385 (29%), Positives = 179/385 (46%), Gaps = 28/385 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG + L  +  I+REE +
Sbjct: 1   MSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLRVLRRIEEIVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   D +  + R+  YG  + RL DR     + GPTHEE+ T   +   
Sbjct: 61  AIGAQEIQFPALLPRDPYESTNRWTEYGPNLFRLKDRKGNDYLLGPTHEELFTLAVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY     +Y+
Sbjct: 121 SSYKDYPVILYQIQNKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLSESYALHRKAYV 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++F RL L+ + + A SG +GG  S EF+  A+TGE     S+      + +  T     
Sbjct: 181 KVFDRLSLRYVIVSATSGAMGGSASEEFLAEAETGEDTYVRSESGYAANVEAVVTPAPPA 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             ++            T  + +   F +                    G +++   +   
Sbjct: 241 QPVDDKPAAQVHHTPDTPTIESLVAFLNGAG----------------LGREFTAADTL-- 282

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                K+  V++   G     ++   +    +        S+AP +++L  ++  D    
Sbjct: 283 -----KNVMVKLRQPGSDEWELLGVGVPGDREVDMKRLEASLAPAEVAL--LEDKDFAAS 335

Query: 363 DACEKIY---ARLSKVGCDVFWDDM 384
               K Y     L+  G     D  
Sbjct: 336 SFLVKGYIGPGALAANGVRYLVDPR 360



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 6/202 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK----RVSARGIEVGHIFYFGTKYSL 296
           D    + +       +     +   ++ D  P         SARGIE+GHIF  G KY+ 
Sbjct: 372 DKHDHHVVDLVVGRDFTPDGTIEAAEVRDGDPSPDGRGTLESARGIEIGHIFQLGRKYTN 431

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                  G D K   + MGSYGIG  R+VA + E SHD  G++WP +V+P+ + ++ +  
Sbjct: 432 AFGLDALGPDSKPVRITMGSYGIGVSRLVAVIAEQSHDESGLVWPRAVSPYDVHVV-VAG 490

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            ++      EK+ A L   G  V  DD     G +FA A+L+G P  V+VG + ++D K+
Sbjct: 491 KNEEITAGGEKLAAELEAAGLSVLLDDRKASPGVKFADAELVGVPTIVVVG-RGLADGKI 549

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
           E+K R +G RE+++L+  + + 
Sbjct: 550 EVKDRRSGEREEIALDGAVAHL 571


>gi|302542146|ref|ZP_07294488.1| proline-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459764|gb|EFL22857.1| proline-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 569

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/230 (44%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE ASHKL++R G + + S GI++WLP+G+K L+NV+ I+REE 
Sbjct: 9   RMSTLMLKTLREDPADAETASHKLLVRAGYVRRASAGIWTWLPVGKKVLENVSRIVREEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 69  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD + EG   SY     +Y
Sbjct: 129 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTSDEGLAESYRLHREAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 189 QRIFERLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPNCDYAA 238



 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 6/227 (2%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G++  + +   +                  ++V           DV   +  D  P+   
Sbjct: 346 GKSFRYIADPRVAPGTAWVTGANKPDTHARNVVCGRDFEVDDYLDVVVVEPGDPCPQCGT 405

Query: 277 VS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R IE+GHIF  G KY+        G +GK   V MGSYGIG  RVVAA+ E + D
Sbjct: 406 GIALDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRVVAALAEQTFD 465

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
             G+ WP  VAP  + ++   A   +  +    +  +L   G  V  DD  G   G +F 
Sbjct: 466 DSGLCWPREVAPADVHIV--AAGKALQTELALDLAEKLGTAGVRVMVDDRAGVSPGVKFT 523

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            A+L+G P  ++VG +   D  VE+K R TG RE++ ++E ++  + 
Sbjct: 524 DAELIGVPTILVVG-RGAKDGVVELKDRRTGDREELPIDEALSRLTS 569


>gi|145534943|ref|XP_001453210.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420921|emb|CAK85813.1| unnamed protein product [Paramecium tetraurelia]
          Length = 609

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 171/443 (38%), Gaps = 50/443 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK +    ++   D      +  L   + ++ + G   +LP G K  + +  +IR+E   
Sbjct: 212 SKLYQDYQKQMECDHRHIGKQNHLF--VFNKLAPGSAFFLPHGTKIYNKLVEMIRKEYRE 269

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L   DLW +SG  D Y + +      +D  M   P +      ++++   
Sbjct: 270 RGYQEVITPQLFHKDLWKQSGHLDKYAENIYMT---HDHQMGLKPMNCPGHCLLYKTLQH 326

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP  F    +  R+E+     G+ R R+F   DA+ F  T E  +           
Sbjct: 327 SYKELPIRFADFGVLHRNEVHGTLTGLTRVRKFTQDDAHIF-CTIEQIQQEIKNTLDFLS 385

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++ R G  +  +   + P   D     + + D  E Q+  +     +     +  F   
Sbjct: 386 KVYGRFGF-TWELTLSTRP---DKYIGDLQIWDEAERQLRIALSDTPYTENPGDGAFYGP 441

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
                I +                             +  + G I      ++LP     
Sbjct: 442 KIDVLIRDHNQ--------------------------KQHQCGTI---QLDFNLPERFDL 472

Query: 301 TFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   + K    V +    +G++  + A++   ++G    WP  ++P ++ +I +    +
Sbjct: 473 TYHHENDKFSRPVMIHRAILGSIERMMAILTEQYNG---RWPFWLSPRQVLIIPV---SE 526

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +   ++IY +L K+G +V  +D  + +G +    ++L F   + +G+K    + V+++
Sbjct: 527 VSKQYAKEIYDQLYKLGFEVELEDSEQTLGKRIRKGEMLHFNYILTLGAKEQESNTVDVR 586

Query: 420 HR-LTGIREDMSLEEVINYASHR 441
            R      + M L+E I      
Sbjct: 587 ERGDNHKHQSMKLDEFITKIIQL 609


>gi|302558076|ref|ZP_07310418.1| prolyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302475694|gb|EFL38787.1| prolyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 566

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 99/230 (43%), Positives = 139/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLMVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFDL  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQSKYRDEARPRAGILRGREFLMKDSYSFDLEDEGLAKSYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            ++F RLGL      A +G +GG  S EF+  A+ GE       +     
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDTFADCPNCDFAA 237



 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 7/229 (3%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPE 273
             G  +V    D    P  +  T  +   +    V       A    DV   +  D  P+
Sbjct: 340 PQGLDKVTYIADPRVAPGTAWITGANKAGTHTKNVVAGRDFEADAYVDVVVVQEGDPCPK 399

Query: 274 NKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E 
Sbjct: 400 CGTGLRLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQ 459

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + D KG+ WP  VAP  + ++   A   +  +   ++  +LS  G  V  DD  G   G 
Sbjct: 460 TADDKGLCWPAEVAPADVHVV--AAGKALQTELALEVSEKLSAAGLRVLVDDRPGVSPGV 517

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +F  ++L+G P  ++ G +  ++  VE+K R TG RE++++EE +   +
Sbjct: 518 KFTDSELIGVPQILVAGRR-AAEGVVELKDRRTGEREELTIEEALTRLT 565


>gi|307331523|ref|ZP_07610636.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306882840|gb|EFN13913.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 573

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/230 (45%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE ASHKL++R G + + + GI++WLP+G+K L+NV  I+REE 
Sbjct: 9   RLSTTMLKTLREDPADAETASHKLLVRAGYVRRAAAGIWTWLPIGKKVLENVARIVREEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+D YG  + R+ DR     + GPTHEE+ T   +  
Sbjct: 69  DAIGAQEVLLPALLPREPYEVSGRWDEYGDLLFRIKDRKGADYLLGPTHEEIFTLTVKDQ 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REFLMKD+YSFD T EG   SY     +Y
Sbjct: 129 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFLMKDSYSFDTTDEGLAESYRLHREAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 189 QRIFQRLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPNCDYAA 238



 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 6/227 (2%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G++  + +   +                  ++V           DV   +  D  P    
Sbjct: 346 GKSLRYIADPRIAPGTAWVTGANKPDTHARNVVCGRDFEVDDYLDVVVVQPGDPCPRCGT 405

Query: 277 VS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R IE+GHIF  G KY+        G +GK   V MGSYG+G  R VAA+ E +HD
Sbjct: 406 GIELDRAIEIGHIFQLGRKYADAFQLDVLGQNGKPARVTMGSYGVGVSRAVAALAEQTHD 465

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
             G+ WP  VAP  + ++   A   +  +    I  +L   G  V  DD  G   G +F 
Sbjct: 466 ESGLCWPREVAPADVHIV--AAGKALQTELALDIAEKLGTAGVRVMVDDRAGVSPGVKFT 523

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            A+L+G P  ++VG +   D  VE+K R TG RE++ ++E I+  + 
Sbjct: 524 DAELIGVPTILVVG-RGAKDGVVELKDRRTGEREELPIDEAISRLTA 569


>gi|22299745|ref|NP_682992.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|73919834|sp|Q8DGW0|SYT_THEEB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22295929|dbj|BAC09754.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 605

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 156/446 (34%), Gaps = 51/446 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 189 EEALRRDHRKVGKELGLFI-FADPVGPGLPLWTPRGTVLRSTLEDFLKKEQLKRGYLPVV 247

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND------KAMIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   +       +  +  P +      I++S ++S
Sbjct: 248 TPHIARVDLFKTSGHWQKYKEDMFPLMAEDAEAAAHEQGFVLKPMNCPFHIQIYKSELRS 307

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    +R E      G+ R R F + D++ F +TPE     +  +    L 
Sbjct: 308 YRDLPLRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLF-VTPEQLDAEFLNVVDLILT 366

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  L L     R        D            E  +                    + 
Sbjct: 367 VFRCLRLNKFKARLSFRDPKSDKYIGSDEAWSKAEAAI-----------------QRAVE 409

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--M 298
            L           A      +    D+             +G  +  GT    Y+LP   
Sbjct: 410 QLGMEHFLGIGEAAFYGPKLDFIFEDA-------------LGREWQLGTVQVDYNLPERF 456

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   D  +   V +     G++  +  ++   + G    W   +AP ++ L+ +   
Sbjct: 457 DLEYVAEDNTRRRPVMIHRAPFGSLERLIGILIEEYAGDFPFW---LAPEQVRLLPVG-- 511

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R   E++ A+L + G  V  D  G+++G Q   A+    P+  I+G+K V    V 
Sbjct: 512 -DEQRPYAERVAAQLRERGVRVSVDRSGDRLGKQIRNAETQKIPVMGIIGAKEVEHETVS 570

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           I+ R  G     +LE +I   +   +
Sbjct: 571 IRTRAAGDVGTFALEHLIAKLTSAMA 596


>gi|300087319|ref|YP_003757841.1| prolyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527052|gb|ADJ25520.1| prolyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 573

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/234 (44%), Positives = 147/234 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P +AE  SH+L+LR GMI Q + G+YS+LP   +    +  IIR+E
Sbjct: 1   MRLSQLFGKTQREIPGEAETISHRLLLRAGMIAQLTAGVYSYLPPAWRTSRKIMDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+++P LQ  +LW +SGR  ++G  + +L DR +  +  GPTHEEV++D+   
Sbjct: 61  MDAAGCQEITMPVLQPIELWQKSGRGAAFGDNLFQLTDRKEHTLALGPTHEEVVSDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ K RDE RPR G++R REF+MKD YSFD    G + SY +M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKLRDEPRPRGGLIRVREFIMKDMYSFDADEAGLEESYQRMVQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  I+ R GLK++ + A+SG IGG  SHEF+VLA++GE +V             
Sbjct: 181 YKNIYRRCGLKAMAIEADSGAIGGKASHEFMVLAESGEDEVIFCAGCGYAANKE 234



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 94/176 (53%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            +       + RGIEVGH+F  GT  +    A +  A+G      MG YGIG  R++AA 
Sbjct: 389 CARCGGTLDATRGIEVGHVFKLGTFLAETFGAVYTDAEGNQKPCIMGCYGIGIGRLLAAA 448

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE +HD KGIIWP  +AP+++ L  +   ++  R A EK+Y  L+  G +V +DD  E  
Sbjct: 449 IEQNHDDKGIIWPMPIAPWQVHLTGLGLENEPVRAAAEKLYGELTSAGIEVLYDDRPESP 508

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F  ADLLG PL++ +  + +    VE+K R     E +  +EV+       S+
Sbjct: 509 GVKFNDADLLGMPLRLTISPRSMDKGSVEVKQRAEKAFELVPADEVVEVTRKLVSD 564


>gi|319957838|ref|YP_004169101.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Nitratifractor
           salsuginis DSM 16511]
 gi|319420242|gb|ADV47352.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Nitratifractor
           salsuginis DSM 16511]
          Length = 605

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 156/447 (34%), Gaps = 45/447 (10%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +  +++E  R D      +L L      +   G+  WLP G +    +  I+     R
Sbjct: 198 KKWQQMMEEAKRRDHRKLGTELELFM-FNEEAGAGLPFWLPKGARLRSKLEQILWRSHRR 256

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  AD+W  SG Y  YG+ M  L + + +     P +      IF++  K
Sbjct: 257 RGYEPVRGPEILKADMWRTSGHYACYGENMY-LTEIDGQEYGLKPMNCIGHILIFKNSTK 315

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++  +  R E      G++R REF   DA+ F  TPE  K    ++     
Sbjct: 316 SYRDLPLKYFEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CTPEQIKPVVLEVVEFVD 374

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +  + G +   M   + P       E   +A                        +   
Sbjct: 375 AVMKKFGFEY-TMEISTKPEKAIGDDEVWEVATQALKDALDENGLEYGIDEGGGAFYGPK 433

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G +      ++LP     
Sbjct: 434 IDVKITDA---------------------------IGRKWQCGTV---QVDFNLPERFDV 463

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   V +    +G+     A++   + G+   +   +AP ++  + I A   
Sbjct: 464 EYVAEDNTRKRPVMIHRAILGSFERFIAILTEHYAGEFPFF---IAPTQVIFVPIAA--- 517

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++   L +   D    D  + +  +  +A+    P  VIVG + V +  V ++
Sbjct: 518 EHTAYAKELAEALMEREIDSEIYDRNDSLNKRIRLAEKQKVPYVVIVGDEEVKNRSVAVR 577

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R    + ++S ++ +   S      +
Sbjct: 578 DRRKKEQYNLSADDFMLQLSKELQEGK 604


>gi|220912189|ref|YP_002487498.1| prolyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|219859067|gb|ACL39409.1| prolyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 599

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 138/232 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG   L  V  +IREE  
Sbjct: 1   MSQLFLRTLREDPVDAEVASHKLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEQVIREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + +   
Sbjct: 61  AIGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +YL
Sbjct: 121 SSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYAAHRSAYL 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           +IF RLGL  +P+ A +G +GG  S EF+   + GE     S       + +
Sbjct: 181 KIFERLGLDVVPVAATAGAMGGSRSEEFLFPTEIGEDTFVRSAAGYAANVEA 232



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 5/195 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             +    +    +  D  P+      +ARGIE+GHIF  G KY+  +       +GK   
Sbjct: 407 FTWDGVIECTEVRAGDPAPDGSGPLETARGIEMGHIFQLGRKYAAALDLKVLDQNGKQVT 466

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V MGSYG+G  R VAA+ E++HD KG+ WP +VAP  + ++ +   + +   A E++   
Sbjct: 467 VTMGSYGVGVTRAVAALAEANHDAKGLTWPRAVAPADVHVVAVGKGEDIF-AAAEQLSVG 525

Query: 372 LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L   G DV +DD      G +F  A+LLG P  + VG + + D  VEIK R TG  E+++
Sbjct: 526 LEAAGLDVIYDDRFKVSPGVKFGDAELLGVPTILAVG-RGLVDGVVEIKDRRTGEAENVA 584

Query: 431 LEEVINYASHRFSNN 445
           +++ ++Y  +   N+
Sbjct: 585 VDKAVDYVVNAVRNS 599


>gi|237752912|ref|ZP_04583392.1| threonyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375179|gb|EEO25270.1| threonyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 605

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L T    +   G+  WLP G +   N+  ++ +   
Sbjct: 197 LTQYLHQLEEAKKRDHRKVGVEMELFT-FDEEVGAGLPIWLPKGARLRRNLENLLTQALI 255

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  + +W  SG Y +YG+ M      ++      P +      ++++ +
Sbjct: 256 ERGYEPVRGPEILKSAVWKTSGHYANYGENMY-FTTIDEVEYGIKPMNCVGHIKVYQNSL 314

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  FY+  +  R E      G++R REF   DA+ F   P         +    
Sbjct: 315 HSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPSQIASEVESIIDFT 373

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I +  G     M   + P     S E    A                           
Sbjct: 374 QKIMNAFGFSY-EMEISTKPEKSIGSEEVWEEATQALKGALERCGIAYKIDEGGG----- 427

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D++    +     I++        +++L    T
Sbjct: 428 ---------------AFYGPKIDIKITDAIGRKWQCGTVQIDM----NLPERFAL----T 464

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +      V +    +G+     A++     G+   +   VAP ++ +I I    + 
Sbjct: 465 YTDENNSTQQPVMIHRAILGSFERFVAILTEHFGGEFPFF---VAPTQVIIIPI---SEA 518

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  ++++  L KVG     ++  E +  +   A+    P+  ++G+K   +  V ++ 
Sbjct: 519 QYNYAKELHNALLKVGVYAEIENKNETLNKRIRNAEKQRVPMIAVLGAKEKEERLVAVRD 578

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    + +MS E  I     +   
Sbjct: 579 RRLKEQSNMSFESFITLTKEKMRE 602


>gi|257068210|ref|YP_003154465.1| prolyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559028|gb|ACU84875.1| prolyl-tRNA synthetase, family II [Brachybacterium faecium DSM
           4810]
          Length = 594

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/233 (43%), Positives = 141/233 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REEQ
Sbjct: 3   RLSSSFIRTLREDPADAEVASHKLLVRAGYIRRSAAGVYTWLPLGLKVLRKVEQIVREEQ 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    LQ  + +  +GR++ YG  + RL DR     +  PTHEE+ T   +  
Sbjct: 63  DAIGGQEVLFSALQPREPYEATGRWEDYGPNLFRLQDRKQDDYLLAPTHEEMFTLTVKDL 122

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R+REFLMKDAYSFD+  EG   SY K  ++Y
Sbjct: 123 FSSYKDLPTMLYQIQAKYRDEARPRAGLLRTREFLMKDAYSFDVDDEGLDASYEKQRLAY 182

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            R F RLGL ++  RA++G +GG  S EF+     GE     S       + +
Sbjct: 183 QRTFERLGLPTVICRADAGAMGGSRSEEFLHPTPVGEDTFVVSDGGYAANVEA 235



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RG+E+GHIF  G  Y+  +       +GK   V MGSYGIG  R +AAV E  HD 
Sbjct: 426 MRLTRGMEMGHIFQLGRTYAEALGLKVLDENGKSVVVTMGSYGIGVTRAIAAVAELCHDE 485

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           KG+ WP  +AP  + ++     D       E+I   L   G +V +DD  +   G +F  
Sbjct: 486 KGLCWPRQLAPADVHIVA-TGKDPAIFAEAERIAGALEARGLEVLYDDRPKVSPGVKFKD 544

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P  V+VG + ++   VE++ R  G   ++S EEV++  +    
Sbjct: 545 SELLGVPTSVVVG-RGLATGVVEVRDRAGGEIREVSPEEVVDAVTAEVR 592


>gi|291004232|ref|ZP_06562205.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 581

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 99/223 (44%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G + +   GIYSWLPLG + L N+  I+R+E 
Sbjct: 4   RMSTLFLRTLREDPADAEVPSHRLLVRAGYVRRIGPGIYSWLPLGLRVLRNIEEIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  DAIGAQEIHFPALLPKEPYEATNRWTEYGPNLFRLKDRKGGDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG  +SY     +Y
Sbjct: 124 YSSYKDYPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDDEGLTNSYRLHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +RIF R+GL+ + + A SG +GG  S EF+  A TGE     S
Sbjct: 184 IRIFDRVGLRYVIVAATSGAMGGSASEEFLAEAPTGEDTFVRS 226



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 2/164 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+   S    G DGK   + MGSYG+G  R+VAA+ E SHD  G++
Sbjct: 419 RGIEIGHIFQLGRKYADAFSLDALGQDGKPKRITMGSYGVGVSRMVAAIAEQSHDELGLV 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAP  + ++ I   D+  R+  E++ A L   G  V  DD     G +FA A+L+G
Sbjct: 479 WPREVAPADVHVV-IAGKDESVREGAERLAADLDAAGVRVLLDDRNASPGVKFADAELVG 537

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  ++VG K ++   VE+K R +G RE++ ++  + +      
Sbjct: 538 VPTILVVG-KGLAKGVVEVKDRRSGDREEVPVDGAVEHLVSTIR 580


>gi|145348306|ref|XP_001418593.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578823|gb|ABO96886.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 564

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 148/438 (33%), Gaps = 41/438 (9%)

Query: 8   LPILQENPRDAEIASHKLMLR-TGMI----HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           L    +   +A+   H+ + +  G+          G+  W P G      +    ++   
Sbjct: 152 LQAYNDFKAEAKRRDHRTIGKDLGLFSLQQDNAGGGLVFWHPKGAHMRHMIETYWKDLHL 211

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +   +LW  SG  D Y + M +     D+     P +      +++   
Sbjct: 212 ARGYELLYSPHVARQELWKTSGHSDFYSENMYQPIKVEDEMYQLKPMNCPFHIVVYQDGY 271

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY++LP  + ++   +R E      G+ R R F   DA+ F L P+        +    
Sbjct: 272 YSYKDLPIRWAELGTVYRYERSGTMHGLFRVRGFTQDDAHIFCL-PDQITDEIKSVLDLT 330

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I    G K   +   + P       +    A+         K +              
Sbjct: 331 EEILSTFGFKEFEVNLSTRPEKSVGDDKIWDTAEGALKDALQMKGWDYIVDDGGG----- 385

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D++    + S   ++    F    ++ L     
Sbjct: 386 ---------------AFYGPKIDIKILDAIGRKWQCSTVQLD----FNLPERFDLSY--- 423

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               + K   + +     G++     ++  ++ G+  +W   +AP ++ L+ +       
Sbjct: 424 VDRENAKQRPIMIHRAIFGSLERFFGILTENYAGEFPLW---LAPIQVRLLPVT---DEV 477

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E +  +L   G  V     G+++      A+    P+  +VG +   ++ + ++  
Sbjct: 478 SDYTEGVAKKLRDAGVRVEI-CTGQRLAKLVRTAEKAKIPVMAVVGREEAENNTLAVRTF 536

Query: 422 LTGIREDMSLEEVINYAS 439
             G    +S++EV++  +
Sbjct: 537 KDGDVGTLSVDEVLSRVT 554


>gi|308173620|ref|YP_003920325.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307606484|emb|CBI42855.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328553448|gb|AEB23940.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328911761|gb|AEB63357.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 564

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 108/235 (45%), Positives = 151/235 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SHKL+LR G I Q++ G+YS++PL  + + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHKLLLRAGFIRQNTSGVYSYMPLAYRVIQNIQKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLEETYQNMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S           
Sbjct: 181 YSSIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYSDGSSYAANTEM 235



 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G+ +++  +            +  D    N  +E+  +  A   D+   +  D  P+ K 
Sbjct: 340 GDIEIYADQAVKVMVNAVSGANEKDRHYRNVNIERDASVKAYA-DLRIIQEGDPSPDGKG 398

Query: 277 VSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                 GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD
Sbjct: 399 TIRFAEGIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGIGVSRTLSAIAEQHHD 458

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG+IWP SVAP+ + ++ +   ++  ++  EK+Y +    G +V +DD  E+ G +FA 
Sbjct: 459 EKGLIWPKSVAPYDLHILALNMKNEAQKELAEKLYGKFQAEGYEVLYDDRAERAGVKFAD 518

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +DL+G P+++ VG +   +  VE+K R TG   ++S++E+  +   +
Sbjct: 519 SDLIGLPIRITVGKR-ADEGIVEVKIRKTGESAEVSVDELSEFIKTK 564


>gi|156740370|ref|YP_001430499.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|156231698|gb|ABU56481.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 595

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 141/446 (31%), Gaps = 42/446 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L          G+  + P G+     + + +RE Q R G
Sbjct: 184 YLHRLEEAKRRDHRRIGKELGLFY-FSEDIGPGLPLFTPKGEMLRHLMESYVREVQTRYG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSH-IK 123
              +    +    L+ +SG Y++Y + M      +++ +    P +      +++   I 
Sbjct: 243 YQHVWTGHIVKETLYKKSGHYEAYRENMFPPMIEDEEHVYRLKPMNCPSHMTLYKEMGIH 302

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E R    G+ R R     D + F   P+  +  +        
Sbjct: 303 SYRDLPLRFAEFATLYRYEERGTLTGLTRVRALTQDDCHIF-CRPDQIEEEFGLALRLIR 361

Query: 183 RIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +       +  +R      GG      E   LA+                 P       
Sbjct: 362 EVLETYRFTNYRVRLSLRGEGGKYIADDEAWDLAERALRTALDHYSVQYEEAPG------ 415

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +    D L    ++S   ++       G +Y      
Sbjct: 416 --------------EAAIYGPKADFLAHDVLGREWQLSTIQVDFIQPRRLGLEY------ 455

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                DG+    V +     G       V+     G   +W   +AP +  +I I   D+
Sbjct: 456 --IAEDGQPRTPVVLHRAVTGTTERFMGVLIEHFAGAFPLW---LAPVQAVVIPIS--DE 508

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +  +L+  G  V  D   E++ ++   A L   P  +I+G +      V ++
Sbjct: 509 RHGAYAADVGRQLTAAGLRVEVDLSRERMQAKIRQAQLQKIPYMLIIGDREQHAGAVAVR 568

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       + +   I  A       
Sbjct: 569 CRSGEDLGAVPVAAFIARARAEIEAK 594


>gi|300120854|emb|CBK21096.2| unnamed protein product [Blastocystis hominis]
          Length = 767

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 159/444 (35%), Gaps = 43/444 (9%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A+   H+ +         H+ S G   +LP G    + +   IR E +  
Sbjct: 359 LKEWKKFQEEAKKNDHRRLGEQQDLFFFHELSPGSCFFLPKGAYIYNKLIEFIRHEYHER 418

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW  SG    Y   M  L + +D      P +      +F+  + S
Sbjct: 419 GYTEVVSPNVYNLELWNISGHASHYRDSMF-LFNCDDTEYGLKPMNCPGHCLMFKHAMHS 477

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F    +  R+EL     G+ R R F   DA+ F   P+  K   + +      
Sbjct: 478 YRELPIRFADFGVLHRNELSGALNGLTRVRRFQQDDAHIF-CRPDQIKQEVSGVLDFMRH 536

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G+    +   + P                  +       +     +  T+  +  
Sbjct: 537 VYGIFGMSF-NLELSTRP------------------KKAMGDLALWQQAEASLTESLNEF 577

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 +      A      + K+ D+L    + +   ++    F    ++       +K
Sbjct: 578 IGEGNWKVNPGDGAFYGPKIDIKVMDALHRVHQTATIQLD----FQLPIRF----ELEYK 629

Query: 304 GADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG  +  V +    +G++    A++     GK   WP  ++P +  +I + A    C 
Sbjct: 630 KADGSMERPVMVHRAILGSVERSFAILLEHFKGK---WPFWLSPRQAIVIPVNA---TCM 683

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+  RL         DD G  +      A L  F   ++VG+K      V I+ R 
Sbjct: 684 EYAQKVRQRLWDNYFQAEVDDTGRTLNKMVREAQLAQFNYILVVGNKEAETDTVTIRSRS 743

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
             I    +++E I        N +
Sbjct: 744 NEIIGTKTVDECIAMFKEMEKNYQ 767


>gi|294631730|ref|ZP_06710290.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835063|gb|EFF93412.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 567

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 99/230 (43%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + G++SWLPLG++ L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGVWSWLPLGRRVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEATGRWDEYGGELFRLKDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQSKYRDEARPRAGILRGREFLMKDSYSFDTADEGLAESYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF RLGL      A +G +GG  S EF+  A+ GE       +     
Sbjct: 188 QRIFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDTFADCPNCDFAA 237



 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 6/227 (2%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           GE   + +   +            +     ++V           DV   +  D  P+   
Sbjct: 344 GEKVKYIADPRIAPGTAWITGANKEHTHAKNVVAGRDFEVDEYVDVVVVQDGDPCPKCGT 403

Query: 277 --VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E   D
Sbjct: 404 GLKLDRAIEIGHIFQLGRKYTDALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQHAD 463

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
             G++WP  VAP  + ++   A   +  +    +  +L+  G  V  DD  G   G +F 
Sbjct: 464 EHGLVWPAEVAPADVHVV--AAGKALQTEVALDVSQKLAAAGVRVLVDDRAGVSPGVKFT 521

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            A+L+G P  ++ G +   +  +E+K+R TG RE++++EE +   + 
Sbjct: 522 DAELIGVPQILVAGRR-AGEGVLELKNRRTGEREELTVEEALTRLTA 567


>gi|313235460|emb|CBY19737.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 154/448 (34%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +++     +   RD      +  L T      S G   WLP G    + +   IR E 
Sbjct: 364 QLTEWVNFQEEAKKRDHRRIGTQQELWT--FDPVSAGSCFWLPRGAVIYNRLQDFIRSEY 421

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + +++LW  SG +  Y  +M      +DK     P +      +F S 
Sbjct: 422 RKRGFKEVVTPNIFNSELWKTSGHWQHYEDDMFTFKVEDDK-WAMKPMNCPGHCVMFGSR 480

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP  F    +  R+EL     G+ R R F   DA+ F    E  +         
Sbjct: 481 LRSYKELPLRFADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCAR-EQIEGEITAALDF 539

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +  ++   G     +   + P                  + +  +            +  
Sbjct: 540 FKFVYDTFGFTF-ELNLSTRP------------------EKYLGEVADWDEAEGMLKNAL 580

Query: 241 DIISLNSIVEQ--WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +     +  +        A      + K+ D+L    +++   ++    F    ++    
Sbjct: 581 NTFCSTNETKWELNPGDGAFYGPKIDIKILDALKRRHQLATIQLD----FQLPQRF---- 632

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F   + ++  V +    +G++    A++  S  GK   WP  ++P ++ ++ I    
Sbjct: 633 KLKFVRDNKEETPVMIHRAILGSIERCVAILTESFGGK---WPFWLSPRQVRVVPIGKS- 688

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                  + I  +L   G +   D D  +    +   A L  +   ++VG K +      
Sbjct: 689 --QVPFAQSIANKLFDAGLEAEADPDCADTFNYRIRRAQLEQWNFILVVGDKELEAGTCA 746

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + ++ V++       N 
Sbjct: 747 VRTRDAQQHGVLDVDFVVDELVRLHKNR 774


>gi|312876378|ref|ZP_07736363.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796872|gb|EFR13216.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 647

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 167/452 (36%), Gaps = 42/452 (9%)

Query: 2   RRSKY--FLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNA 55
           ++S+   +L  L+E    A+   H  + R   I        +G+   +P G K L  +  
Sbjct: 227 KKSELDEYLKKLEE----AKKRDHNRIGRELEIFTTSEVVGQGLPLLMPKGAKILQILQR 282

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
            + +E+ + G +    P +  +DL+  SG +D Y   M  + +  ++ +   P       
Sbjct: 283 FVEDEEEKRGYLLTKTPYMAKSDLYKISGHWDHYRDGMFVIEEDENEVLALRPMTCPFQF 342

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S  +SYR+LP  + +    FR+E      G++R R+F + DA+     P+  +  +
Sbjct: 343 LIYNSKQRSYRDLPIRYSETSTLFRNESSGEMHGLIRVRQFTLSDAHII-CRPDQVEEEF 401

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +      I   LG+++      S               D    + +           +
Sbjct: 402 KGVLDLIQYIMKTLGIENDIWYRFSR-------------WDPNNKEKYIDNPEAWEKTEN 448

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +  +  D + +N   ++     A      + +  +   +   +    I+           
Sbjct: 449 DMKNILDKLGIN--YKEAKGEAAFYGPKLDIQFKNVYGKEDTIITVQIDFALAER----- 501

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 T+   DG K   + +    IG      A++   ++G   +W   ++P +I +I 
Sbjct: 502 ---FDMTYVDRDGQKKRPIIIHRSSIGCYERTLAMLIEKYNGAFPLW---LSPVQIRVIP 555

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  +     +  + +   L + G  V  D   E +G +   A L   P  VIVG K   +
Sbjct: 556 VSDN---FNEYAKNVARILKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKE 612

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V ++ R  G     ++E+ I     +    
Sbjct: 613 NTVAVRDRKKGDLGSFTIEDFIAMVKEKVDKK 644


>gi|332295560|ref|YP_004437483.1| Prolyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332178663|gb|AEE14352.1| Prolyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 572

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 106/231 (45%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   L+E P DAE  SH L+LR G I + S GIY++LPL ++ L  +  I+REE
Sbjct: 1   MKLSKLFFKTLKEVPGDAEAISHVLLLRAGYIRRLSSGIYTYLPLAKRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                + E+ +P LQ  ++W  SGR+  YG E++R  DR+DK    GPTHEEV+TD+   
Sbjct: 61  MININSQELLLPALQPREIWEISGRWKKYGLELMRFKDRHDKDYALGPTHEEVITDLINR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + +QIQ KFRDE+RPRFG+MR+REF+MKDAYSF    E    +Y  MF +
Sbjct: 121 EVNSYKQLPISVFQIQTKFRDEIRPRFGLMRTREFIMKDAYSFHRNEEDLDKTYWDMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +I  R+GL    + A+SG IGG +SHEF+VL   GE ++          
Sbjct: 181 YEKILTRMGLNFKSVEADSGAIGGSVSHEFMVLTPFGEDKILYCSSCSYAA 231



 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 101/177 (57%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           F S   ++ + + G E GH+F  GTKYS PM A FK  DGK+   +MG YGIG  R++A 
Sbjct: 394 FCSRCGSRLLESTGSEAGHVFKLGTKYSEPMKAYFKDEDGKEKPFEMGCYGIGISRLLAI 453

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+E  HD  GIIWP+S++P+++ +I    +D+      E I+  L + G  V +DD  E+
Sbjct: 454 VVEQHHDEFGIIWPNSISPYQVIIIPTNINDKNQLTTSEMIFYELKERGISVLFDDRDER 513

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G +F  ADLLG P+++I+GS F     VEIK R  G    +  +E   Y S +   
Sbjct: 514 AGVKFKDADLLGIPIKIIIGSHFSKSGLVEIKVRRDGSSNLVPPDEASVYVSLKLRQ 570


>gi|15896426|ref|NP_349775.1| prolyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|81854743|sp|Q97ED5|SYP_CLOAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15026247|gb|AAK81115.1|AE007813_2 Prolyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325510583|gb|ADZ22219.1| prolyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 570

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 153/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E+P +AEI SHKLMLR+GMI + + G+Y+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLMLTLRESPAEAEIESHKLMLRSGMIRKMASGVYNYMPLGLKALKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  ++LW ESGR++ +G EM +L DRN++    GPTHEEV TD  RS
Sbjct: 61  MNAAGAQEFLASALLPSELWKESGRWEVFGPEMFKLKDRNEREFCLGPTHEEVFTDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG++RSREF+MKDAYSFD   EG   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGMIRSREFVMKDAYSFDKDNEGLDVSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R  +    + A+SG +GG  S EF+V ++ GE ++    +     
Sbjct: 181 YTKIFKRCNVSCSAVAADSGAMGGSGSAEFMVKSEIGEDEIAFCTECNYAA 231



 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 137/316 (43%), Gaps = 17/316 (5%)

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E      +    EF   D+  F  T      + NK+    +R      +    ++   G 
Sbjct: 255 ETPHAKTIEELVEFFGVDSKKFVKT--IIYRAENKVVAVMVR--GDREVNETKVKNAVGS 310

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +  +L+ E  V   TG    F     +D      + +   + +      +    YA  + 
Sbjct: 311 VDVELADEKTVKKATGAEVGFAGPIGLDVDYLLIDNEVTYMYNFIVGANETGYHYANANY 370

Query: 262 VHN------------EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
             +            E             ARGIEVGHIF  GTKYS  M A F   +G+ 
Sbjct: 371 DRDFKGTVGDFRNAVEGEKCPKCGKPLTIARGIEVGHIFKLGTKYSEAMKAYFVDENGES 430

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + MG YGIG  R ++AV+E  HD  GI+WP SVAP+++ ++      +      EK+Y
Sbjct: 431 KPLIMGCYGIGVNRTMSAVVEQHHDDNGIVWPLSVAPYEVIVVPAVFKSEEQMKEAEKLY 490

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K+G D   DD  E+ G +F  ADL+G P+++ VG K +S+ KVE K R +   E +
Sbjct: 491 TELKKIGVDALLDDRNERAGVKFKDADLIGIPMRITVGKK-ISEGKVEFKCRNSEEVEVI 549

Query: 430 SLEEVINYASHRFSNN 445
            L++VI      F  N
Sbjct: 550 DLDKVIARVEEEFEKN 565


>gi|225016667|ref|ZP_03705859.1| hypothetical protein CLOSTMETH_00576 [Clostridium methylpentosum
           DSM 5476]
 gi|224950631|gb|EEG31840.1| hypothetical protein CLOSTMETH_00576 [Clostridium methylpentosum
           DSM 5476]
          Length = 646

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 163/444 (36%), Gaps = 35/444 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD  +   KL   T  +    +G+   LP G + +  +   + +E+ + G
Sbjct: 232 YLAAVEEAKKRDHNVIGRKLGYFT-TVDVIGQGLPVLLPKGARVIQILQRFVEDEEEKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIK 123
            +    P    +D +  SG +  Y + M  + D   + +     P         + + ++
Sbjct: 291 YLLTKTPYFAKSDFYKISGHWQHYREGMFVMGDEEKDKEVFALRPMTCPFQFQAYLNEMR 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    FR+E      G++R R+F + + +     P+  +  + +      
Sbjct: 351 SYRDLPLRYNETSTLFRNEASGEMHGLIRVRQFTISEGH-LACRPDQVEEEFKQCLELAK 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LGL              D+++ F    +    +   S +  +          + +
Sbjct: 410 FMLETLGLDE------------DVTYRFSKWDENNRDKYIGSAEEWENVQNLMRGILNHL 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +  +   A Y    D+  + ++      K  +   I++   F   +++       +
Sbjct: 458 ELDYTEADGEAAFYGPKLDIQIKNVYG-----KEDTLITIQI--DFQLASRF----DMVY 506

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG+      +    +G      A++   + G   +W   +AP +  ++ I    +  
Sbjct: 507 TDTDGQKKYPYVIHRTSLGCYERTLALLLEKYAGALPLW---IAPEQARILPIG---ERQ 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            DA       L K G  V  DD  E+IG +   A L   P  +++G K V  + V ++ R
Sbjct: 561 HDAAYACRDELRKAGLRVEVDDRSEKIGYKIREAQLEKIPYMLVIGDKEVEANAVSVRSR 620

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    M + + + +A +     
Sbjct: 621 KHGEMGAMPVTQFMEHALNEVRTK 644


>gi|313246933|emb|CBY35782.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 154/448 (34%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +++     +   RD      +  L T      S G   WLP G    + +   IR E 
Sbjct: 364 QLTEWVNFQEEAKKRDHRRIGTQQELWT--FDPVSAGSCFWLPRGAVIYNRLQDFIRSEY 421

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + +++LW  SG +  Y  +M      +DK     P +      +F S 
Sbjct: 422 RKRGFKEVVTPNIFNSELWKTSGHWQHYEDDMFTFKVEDDK-WAMKPMNCPGHCVMFGSR 480

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP  F    +  R+EL     G+ R R F   DA+ F    E  +         
Sbjct: 481 LRSYKELPLRFADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCAR-EQIEGEITAALDF 539

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +  ++   G     +   + P                  + +  +            +  
Sbjct: 540 FKFVYDTFGFTF-ELNLSTRP------------------EKYLGEVADWDEAEGMLKNAL 580

Query: 241 DIISLNSIVEQ--WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +     +  +        A      + K+ D+L    +++   ++    F    ++    
Sbjct: 581 NTFCSTNETKWELNPGDGAFYGPKIDIKILDALKRRHQLATIQLD----FQLPQRF---- 632

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F   + ++  V +    +G++    A++  S  GK   WP  ++P ++ ++ I    
Sbjct: 633 KLKFVRDNKEETPVMIHRAILGSIERCVAILTESFGGK---WPFWLSPRQVRVVPIGKS- 688

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                  + I  +L   G +   D D  +    +   A L  +   ++VG K +      
Sbjct: 689 --QVPFAQSIANKLFDAGLEAEADPDCADTFNYRIRRAQLEQWNFILVVGDKELEAGTCA 746

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       + ++ V++       N 
Sbjct: 747 VRTRDAQQHGVLHVDFVVDELVRLHKNR 774


>gi|108804139|ref|YP_644076.1| Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase [Rubrobacter
           xylanophilus DSM 9941]
 gi|123368184|sp|Q1AWG4|SYT_RUBXD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108765382|gb|ABG04264.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 639

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 145/452 (32%), Gaps = 42/452 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + +L  L+E   RD      +L L T        GI  +LP G+     +   +RE 
Sbjct: 223 KQLRAYLKRLEEARARDHRRLGRELGLFTFAPEDVGPGIPLFLPKGETLRHLMEGFVREV 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G   +    L +  L+  SG  + Y   M       + +    P +      +F S
Sbjct: 283 QTRHGYQHVWTGHLVNERLYARSGHLEHYRDAMFPPMRDGEVSYRLKPMNCPSHMTLFNS 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP  + +    +R E      G+ R R     DA+ F  T E  +  + +   
Sbjct: 343 RPRSYRELPVRYAEFATLYRYEKSGELSGLTRVRSLTQDDAHVF-CTEEQVQEEFARALA 401

Query: 180 SYLRIFHRLGLKSIPMRAESG-PIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               +    G     +R     P GG      E    A+        +      P P   
Sbjct: 402 IIREVLDAYGFTDYRVRLSLRDPEGGKYIADEEKWGRAEGALRAALDAAGIDYEPAPG-- 459

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      +    D L    ++S   ++       G     
Sbjct: 460 ------------------EAAFYGPKADFMARDVLGREWQLSTIQVDFIQPGRLG----- 496

Query: 297 PMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + G DG+ H    +     G      AV+   + G   +W   ++P +  +I + 
Sbjct: 497 ---CEYVGEDGERHTPVLLHRAVTGTTERFMAVLIEHYAGAFPVW---LSPVQAVVIPVA 550

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +   ++   LS+ G  V  DD    +  +         P  +IVG +      
Sbjct: 551 ---DRHLEYARRVREELSEGGLRVEVDDSPNSMQKKIRENARQKTPYLLIVGDREEEAGT 607

Query: 416 VEIKHRLTGIRE-DMSLEEVINYASHRFSNNR 446
           V ++ R  G R+ +M L   +       +  R
Sbjct: 608 VNVRRRGEGKRQTEMGLRGFLERVRGEVAARR 639


>gi|242309942|ref|ZP_04809097.1| threonyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523239|gb|EEQ63105.1| threonyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 605

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 149/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L T    +   G+  WLP G +   N+  ++ +   
Sbjct: 197 LNQYLHQMEEAKKRDHRKVGTEMELFT-FDEEIGAGLPIWLPKGSRLRRNIENLLTKALI 255

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  + +W  SG Y +YG+ M      +       P +      +++S +
Sbjct: 256 QRGYEPVRGPEILKSAVWKTSGHYANYGENMY-FTTIDGVEYGIKPMNCVGHIKVYQSAL 314

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  FY+  +  R E      G++R REF   DA+ F   P         +    
Sbjct: 315 RSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPSQIGIEVENIIDFT 373

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I    G     M   + P     S E    A           +               
Sbjct: 374 KKIMDSFGFSY-EMEISTRPQKSIGSDEVWEEATEALKNALNRCNIPYKIDEGGG----- 427

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + K+ D++    +     I++                 
Sbjct: 428 ---------------AFYGPKIDIKITDAIGRKWQCGTVQIDMNLPDR--------FKLE 464

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +      V +    +G+     A++     G+   +   +AP +  +I I    + 
Sbjct: 465 YTDENNSSKQPVMIHRAILGSFERFIAILTEHFGGEFPFF---IAPTQAIIIPIG---ES 518

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++   L  VG     D+  E +  +   A+    P+ +I+G+K   +  + I+ 
Sbjct: 519 QESYAKELRNALLNVGVYTEIDNKNETLNKRIRNAEKQRVPMILILGAKEQEERIIAIRD 578

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    +  M  +E I ++  +   
Sbjct: 579 RREKQQFTMGFDEFIKFSKEKMRE 602


>gi|271963639|ref|YP_003337835.1| proline--tRNA ligase [Streptosporangium roseum DSM 43021]
 gi|270506814|gb|ACZ85092.1| Proline--tRNA ligase [Streptosporangium roseum DSM 43021]
          Length = 580

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 140/231 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P DAE+ SHKL++R G + + + GIYSWLPLG+  L+NV  I+REE
Sbjct: 3   LRMSSLFLRTLRDDPADAEVPSHKLLVRAGYVRRVAPGIYSWLPLGKMVLENVTRIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G  E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ + 
Sbjct: 63  MNRMGGQEVLFPALLPREYYEATGRWTEYGDTLFRLQDRKGADYLLGPTHEEMFTDMVKG 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  +G K SY +   +
Sbjct: 123 EYSSYKDYPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDDGLKRSYEQHRET 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y+R F RLG+      A SG +GG  S EF+  A TGE             
Sbjct: 183 YIRTFDRLGISYKICFATSGAMGGSASEEFLAPAATGEDTFVACHQCGYAA 233



 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 6/178 (3%)

Query: 264 NEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  D+ P         RGIE+GHIF  G KY+        G DGK   V MGSYG+G 
Sbjct: 400 EVRAGDACPVCGSGLSIDRGIEIGHIFQLGRKYADAAKLDALGPDGKPIRVTMGSYGVGV 459

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R VA + E  HD  G++WP  VAP  + ++          +A  ++   L   G  V  
Sbjct: 460 SRAVAVLAEQRHDELGLVWPREVAPVDVHVV--GTGKDGQIEAANRLAEDLQARGLRVLV 517

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           DD  G   G +F  A+LLG P  +I+G + ++    E++ R+TG++E++ ++E  +  
Sbjct: 518 DDRAGVSPGVKFKDAELLGMPTILIIG-RGLAQGVAELRDRVTGVKEEIPIDEAADRV 574


>gi|254517592|ref|ZP_05129648.1| threonyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226911341|gb|EEH96542.1| threonyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 645

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 152/441 (34%), Gaps = 38/441 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +A+   H  + R   I     +  +G+   +P G K +  +   + +E+ + G + 
Sbjct: 233 EALEEAKKRDHNKLGRELKIFTTDEKVGQGLPLIMPKGAKIVQLLQRWVEDEEEKRGYVF 292

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRND--KAMIYGPTHEEVMTDIFRSHIKSYR 126
              P++   DL+  SG +D Y   M  L D +   + M   P        I+ +   SYR
Sbjct: 293 TKTPSMSKNDLFKVSGHWDHYKDGMFVLGDEDKDPEVMALRPMTCPFQYTIYNAEQHSYR 352

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP  + +    +R+E      G++R R+F + D +     P+  +  +         I 
Sbjct: 353 ELPIRYAETSTLYRNEASGEMHGLIRVRQFTLSDGHIV-CRPDQIEEEFKGCVELINHIM 411

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             LG+             GD+S  F    D   T  + +                D + +
Sbjct: 412 STLGID------------GDISFRFS-KWDPNNTDKYINNPEAWEETQVLMKAILDHLGI 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           + +        A      + +  +   +   +    I+                 T+   
Sbjct: 459 DYVEA--EGEAAFYGPKLDIQFKNVHGKEDTIITIQIDFALAER--------FDMTYIDK 508

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG K     +    IG      A++   + G    W   +AP +  ++ I        D 
Sbjct: 509 DGNKKRPYIIHRSSIGCYERTLAMLIEKYAGAFPTW---LAPTQAIVLPI---SDKYNDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E I       G  +  D   E+IG +   A L   P  ++VG K  ++++  ++ R  G
Sbjct: 563 AESIVKDFKDSGIRITADYRSEKIGYKIREARLERIPYILVVGEKEAANNEASVRSRKNG 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
               + + E+ N      +N 
Sbjct: 623 EEGALPVSELKNRLILEIANK 643


>gi|222528807|ref|YP_002572689.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455654|gb|ACM59916.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 647

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 167/452 (36%), Gaps = 42/452 (9%)

Query: 2   RRSKY--FLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNA 55
           ++S+   +L  L+E    A+   H  + R   I        +G+   +P G K L  +  
Sbjct: 227 KKSELDEYLKKLEE----AKKRDHNRIGRELEIFTTSEVVGQGLPLLMPKGAKILQILQR 282

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
            + +E+ + G +    P +  +DL+  SG +D Y   M  + +  ++ +   P       
Sbjct: 283 FVEDEEEKRGYLLTKTPYMAKSDLYKISGHWDHYRDGMFVIEEDENEVLALRPMTCPFQF 342

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S  +SYR+LP  + +    FR+E      G++R R+F + DA+     P+  +  +
Sbjct: 343 LIYNSKQRSYRDLPIRYSETSTLFRNESSGEMHGLIRVRQFTLSDAHII-CRPDQVEEEF 401

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +      I   LG+++      S               D    + +           +
Sbjct: 402 KGVLDLIQYIMKILGIENDIWYRFSR-------------WDPNNKEKYIDNPEAWEKTEN 448

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +  +  D + +N   ++     A      + +  +   +   +    I+           
Sbjct: 449 DMKNILDKLGIN--YKEAKGEAAFYGPKLDIQFKNVYGKEDTIITIQIDFALAER----- 501

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 T+   DG K   + +    IG      A++   ++G   +W   +AP +I +I 
Sbjct: 502 ---FDMTYVDRDGQKKRPIIIHRSSIGCYERTLAMLIEKYNGAFPLW---LAPVQIRVIP 555

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  +     +  + +   L + G  V  D   E +G +   A L   P  VIVG K   +
Sbjct: 556 VSDN---FNEYAKNVARILKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKE 612

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V ++ R  G     ++E+ I     +    
Sbjct: 613 NTVAVRDRKKGDLGSFTIEDFIAMVKEKVDKK 644


>gi|212696507|ref|ZP_03304635.1| hypothetical protein ANHYDRO_01045 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676492|gb|EEB36099.1| hypothetical protein ANHYDRO_01045 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 390

 Score =  282 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 137/415 (33%), Gaps = 45/415 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            H+ + G   +   G      +     +     G  E+  P + + +LW  SG +D Y +
Sbjct: 6   FHEEAPGFPFFKENGMILRHELLNWWTDVLAENGYGEIQTPLIMNEELWHRSGHWDHYKE 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
            M      + +     P +      ++     SYR+LP    +     R EL     G+ 
Sbjct: 66  NMY-FTKIDGENYAVKPMNCPGSVLVYGEEPHSYRDLPIRLAEYGQVHRHELSGALHGLF 124

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ + L P   K    KM      ++   G K   +   + P       E 
Sbjct: 125 RVRTFTQDDAHVYCL-PSQVKDEVFKMIDLADLLYSTFGFKY-KIELSTRPDDFMGKIEE 182

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+         +                      I  +  A Y    D H E     
Sbjct: 183 WDFAEKALEDALKERGID-----------------YQINPKDGAFYGPKIDFHLEDA--- 222

Query: 271 LPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVA 326
                  + R  + G I   F     +      T+   +G K   V +    +G++    
Sbjct: 223 -------AKRTWQCGTIQLDFQLPQNF----DLTYIDENGEKKRPVMLHRALLGSVERFI 271

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             +     G+  +W   + P ++++I +        D  + +  ++ K G  V  D   E
Sbjct: 272 GSVTEQFAGRFPLW---INPKQVAIIPV---SDKFADFADDLAEKIKKAGYRVDVDHRSE 325

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +G +   A L+     ++VG       K+ +++R     +D+S EE I   +  
Sbjct: 326 GVGYKIRQAQLMRTNYMLVVGENEEKSGKLTVRNRDGEETKDVSFEEFIEKLNQE 380


>gi|332670041|ref|YP_004453049.1| prolyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
 gi|332339079|gb|AEE45662.1| prolyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
          Length = 597

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 139/234 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG + L  V A++REE
Sbjct: 3   LRLSTLFVRTLREDPADAEVASHKLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEAVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  +GR+  YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 63  MAAAGAQEVHFPALLPKEPYEATGRWTEYGPNIFRLKDRKGGDYLLAPTHEELFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T +QIQ K+RDE RPR G++R REF+MKDAYSFD+   G   SY     +
Sbjct: 123 LYSSYKDLPLTLFQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLDASYAAQRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y R+F RLGL+ + + A SG +GG  S EF+     GE     S       + +
Sbjct: 183 YQRVFERLGLEYVIVSATSGAMGGSRSEEFLTPTAIGEDTFVRSAGGYAANVEA 236



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++HD +G+ 
Sbjct: 430 RGIEIGHIFQLGRKYAQALGLTVLDQNGKSQVVTMGSYGIGVTRVLAALAEANHDDRGLA 489

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP  + ++     D    +A E + A+L   G +V +DD  +   G +FA A+L 
Sbjct: 490 WPAHVAPAHVHVVA-TGKDASVFEAAEDVAAQLVARGVEVLYDDRPKVSPGVKFADAELF 548

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL V+VG + +++  VE++ R+ G    + + +V+ + + R + 
Sbjct: 549 GVPLVVVVG-RGLAEGLVEVRPRVGGEPVQVPVADVVEHVAGRVAE 593


>gi|323481345|gb|ADX80784.1| prolyl-tRNA synthetase [Enterococcus faecalis 62]
          Length = 572

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 105/224 (46%), Positives = 144/224 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ + AI+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +     +     +D   L ++         +  D+   +  D  P+   V
Sbjct: 340 EDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGV 399

Query: 278 S--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E + D 
Sbjct: 400 LAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +FA A
Sbjct: 460 RGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 520 DLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|312794079|ref|YP_004027002.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181219|gb|ADQ41389.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 647

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 167/452 (36%), Gaps = 42/452 (9%)

Query: 2   RRSKY--FLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNA 55
           ++S+   +L  L+E    A+   H  + R   I        +G+   +P G K L  +  
Sbjct: 227 KKSELDEYLKKLEE----AKKRDHNRIGRELEIFTTSEVVGQGLPLLMPKGAKILQILQR 282

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
            + +E+ + G +    P +  +DL+  SG +D Y   M  + +  ++ +   P       
Sbjct: 283 FVEDEEEKRGYLLTKTPYMAKSDLYKISGHWDHYRDGMFVIEEDENEVLALRPMTCPFQF 342

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S  +SYR+LP  + +    FR+E      G++R R+F + DA+     P+  +  +
Sbjct: 343 LIYNSKQRSYRDLPIRYSETSTLFRNESSGEMHGLIRVRQFTLSDAHII-CRPDQVEEEF 401

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +      I   LG+++      S               D    + +           +
Sbjct: 402 KGVLDLIQYIMKTLGIENDIWYRFSR-------------WDPNNKEKYIDNPEAWEKTEN 448

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +  +  D + +N   ++     A      + +  +   +   +    I+           
Sbjct: 449 DMKNILDKLGIN--YKEAKGEAAFYGPKLDIQFKNVYGKEDTIITVQIDFALAER----- 501

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 T+   DG K   + +    IG      A++   ++G   +W   ++P +I +I 
Sbjct: 502 ---FDMTYVDRDGQKKRPIIIHRSSIGCYERTLAMLIEKYNGAFPLW---LSPVQIRVIP 555

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  +     +  + +   L + G  V  D   E +G +   A L   P  VIVG K   +
Sbjct: 556 VSDN---FNEYAKNVARILKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKE 612

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V ++ R  G     ++E+ I     +    
Sbjct: 613 NTVAVRDRKKGDLGSFTIEDFIAMVKEKVDKK 644


>gi|297202727|ref|ZP_06920124.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197713306|gb|EDY57340.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 567

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 98/230 (42%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P +   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPAILPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQHKYRDEARPRAGILRGREFLMKDSYSFDTEDEGLARSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            ++F RLGL      A +G +GG  S EF+  A+ GE       +     
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGEDTFADCPNCDFAA 237



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 6/226 (2%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR- 276
           E   + +   +            D     ++V           DV   +  D  P+    
Sbjct: 345 EKLKYIADPRVAPGTAWITGANKDATHAKNVVAGRDFEVDEYVDVVVVQEGDPCPKCGTG 404

Query: 277 -VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA+ E + D 
Sbjct: 405 LKLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQTADD 464

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           KG+ WP  VAP  + ++   A   +  +    +  +L + G  V  DD  G   G +F  
Sbjct: 465 KGLCWPAEVAPADVHVV--AAGKALQIELALDVSEKLREAGLRVLVDDRAGVSPGVKFTD 522

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           ++L+G P  ++ G +      +E+K R TG RE+++++E I   + 
Sbjct: 523 SELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVDEAIARLTA 567


>gi|300783993|ref|YP_003764284.1| prolyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299793507|gb|ADJ43882.1| prolyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 582

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 140/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G + + + G YSWLPLG + L  + A++REE 
Sbjct: 4   RTSSLFLRTLREDPADAEVPSHRLLVRAGYVRRVAPGGYSWLPLGLRVLRRIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAMGAQEIQFPALLPREPYETTGRWTEYGDGLFRLKDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG   SY     +Y
Sbjct: 124 YSSYRDYPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDEGLARSYQAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +++F RLGL+ + ++A SG +GG  S EF+ +A+TGE     S
Sbjct: 184 VKLFDRLGLEYVVVKATSGAMGGSASEEFLAVAETGEDTYVRS 226



 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 2/175 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                  V+ARGIE+GHIF  G KY+        G D K   + MGSYG+G  R+V  + 
Sbjct: 410 PDGHGTLVAARGIEIGHIFQLGRKYTDAFEVDALGPDSKPIRITMGSYGVGVSRLVGVLA 469

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E +HD  G+IWP   +PF + ++ I   D+      EKI A L   G +V  DD     G
Sbjct: 470 EQNHDDLGLIWPRVASPFDVHIV-IAGKDETIAAGAEKIAAELDAAGVEVILDDRKATPG 528

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +FA A+L+G P  ++VG + +++  VE+K R +G RE++++E V+ +      +
Sbjct: 529 VKFADAELVGVPTILVVG-RGLANGVVEVKDRRSGEREEIAVEAVVEHLVKLVRS 582


>gi|224417829|ref|ZP_03655835.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253827169|ref|ZP_04870054.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313141370|ref|ZP_07803563.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253510575|gb|EES89234.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313130401|gb|EFR48018.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 605

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L T    +   G+  WLP G +   N+  ++ +   
Sbjct: 197 LNQYLRQMEEAKKRDHRKVGTEMELFT-FDEEIGAGLPIWLPKGARLRRNIERLLTKALI 255

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  + +W  SG Y +YG+ M      +       P +      +++S +
Sbjct: 256 QRGYEPVRGPEILKSAVWKTSGHYSNYGENMY-FTTIDGVEYGIKPMNCVGHIKVYQSAL 314

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  FY+  +  R E      G++R REF   DA+ F   P         +    
Sbjct: 315 RSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPSQIATEVENIIDFT 373

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I          M   + P     S E    A                           
Sbjct: 374 KKIMDSFDFSY-EMEISTRPEKSIGSDEVWEEATQALKNALE------------------ 414

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               N   +      A      + K+ D++    +     I++                 
Sbjct: 415 --ICNIPYKIDEGGGAFYGPKIDIKITDAIGRKWQCGTIQIDMNLPER--------FKLE 464

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +      V +    +G+     A++     G+   +   +AP +I +I +    + 
Sbjct: 465 YTDENNSSKQPVMIHRAILGSFERFIAILTEHFGGEFPFF---IAPTQIIIIPLG---EA 518

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L  V      D+  E +  +   A+    P+ V++G+K   +  V I+ 
Sbjct: 519 QESYAKELRNQLLNVNVYAEIDNKNETLNKRIRNAEKQRVPMIVVLGAKEEQEKIVAIRD 578

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    +  M  +E I ++  +   
Sbjct: 579 RREKQQSTMGFDEFIKFSKEKMRE 602


>gi|254421628|ref|ZP_05035346.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196189117|gb|EDX84081.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 597

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 115/229 (50%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
                L+E+P +AEI SHKL+LR G + + + G+Y++LPL Q+ LD V+AI+REE N TG
Sbjct: 1   MLFVTLREDPAEAEIPSHKLLLRAGYMRRIASGLYAYLPLLQRVLDKVSAIVREEMNATG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A E  +P LQ A LW ESGR+D+Y K    M  L DR D+ +  GPTHEEV+T I R  I
Sbjct: 61  AQECLLPQLQPASLWKESGRWDTYTKAEGIMFSLGDRRDQELALGPTHEEVITAIARDMI 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y++M+ +Y 
Sbjct: 121 RSYKQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDAESLKATYDQMYRTYS 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            I  R GL    + A+SG IGG  S EF+VLA+ GE +V  ++D     
Sbjct: 181 NILRRTGLAFRAVEADSGAIGGSGSTEFMVLAEAGEDEVLYTEDGHYSA 229



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 1/170 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     +ARGIE+GHIF  G KYS  + AT+    GK+  ++MG YG+G  R+  A +
Sbjct: 420 HDPTQIIQTARGIEIGHIFQLGHKYSEALGATYTSEQGKEVPLEMGCYGVGVSRLAQAAV 479

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E S+D  GIIWP ++AP+   ++     D     A +++Y  L+  G +   DD  E+ G
Sbjct: 480 EQSYDKNGIIWPVAIAPYHAIVVVPNIGDDDQMAAAKQLYDDLNSAGVETLLDDRKERAG 539

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +F  A+L+G P +V+ G + +   KVE+  R  G  E+++L+E ++   
Sbjct: 540 VKFKDAELVGIPFRVVTG-RSLKQGKVEVAKRANGEVEEIALDEAVHTIK 588


>gi|222823074|ref|YP_002574647.1| threonyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254783514|sp|B9KEB1|SYT_CAMLR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222538295|gb|ACM63396.1| threonyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 603

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 160/445 (35%), Gaps = 45/445 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L I++E   RD     +++ L      +   G+  WL  G K    +  ++ +     G
Sbjct: 198 YLKIIEEAKKRDHRKLGNEMKLFA-FDDEIGGGLPIWLSNGAKLRSKLEHLLYKAHRLRG 256

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++SY
Sbjct: 257 YEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVRSY 315

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++      +
Sbjct: 316 RDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILSFVDTL 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P       E   +A     Q    +             +   I 
Sbjct: 375 MKAFGFDY-EMEISTRPAKAIGDDEIWDIATNALKQALDEQGLKYGIDEGGGAFYGPKID 433

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
           +                                  R  + G I      ++LP      +
Sbjct: 434 IKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKLEY 463

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             AD  K   V +    +G+      ++     G+    P  +AP +++++ I    Q  
Sbjct: 464 TDADNEKKQPVMLHRAILGSFERFIGILIEHCAGE---LPFFIAPTQVAIVPI---SQNH 517

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  ++I  +L ++G D       E +  +   A+    P+ +++G + V++  V ++ R
Sbjct: 518 HEYAKEIAKKLLELGIDSEVYSKNESLNKKIRTAEKAHVPMILVLGDEEVANKSVALRDR 577

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
               ++ ++L+E I     + S  R
Sbjct: 578 RAKEQKTLTLDEFITLTKEKLSEVR 602


>gi|33866303|ref|NP_897862.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|81835080|sp|Q7U5D6|SYP_SYNPX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33639278|emb|CAE08286.1| Prolyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 593

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 109/244 (44%), Positives = 147/244 (60%), Gaps = 3/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LP+  K L  +  IIREE
Sbjct: 1   MRVSRLMLVTLRDVPAEAEITSHQLLLRGGFIRRVGSGIYAYLPMMWKVLQRITTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA+E  +P L  ++LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRAGALETLLPQLHPSELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF       + +Y  M
Sbjct: 121 AGELLRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEADLQATYAVM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++P+ A+SG IGG  S EF+V A+ GE  +  S D        +  
Sbjct: 181 DQAYRRIFERCGLEAVPVDADSGAIGGAASQEFMVTAEAGEDLILISDDGAYAANQEKAV 240

Query: 238 DFDD 241
              D
Sbjct: 241 SIPD 244



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 112/263 (42%), Gaps = 9/263 (3%)

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             R G+ +IP     G IG DL+ + +  A +  T      D     +   +   +    
Sbjct: 335 LQRQGINTIPF----GFIGPDLADKVLADASSWTTSFLRLADTTATELEQFHCGANAEDQ 390

Query: 245 LNSIVEQWTAPYAAT----SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             S         A            +     P+ +    RGIEVGHIF  G KYS  +  
Sbjct: 391 HRSHCSWGDLGGAPQGEDLRKARAGERCVHNPDARLQEKRGIEVGHIFQLGRKYSQALDC 450

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G+D    MG YGIG  R+  A +E  HD  GI WP ++AP+++ ++    HD  
Sbjct: 451 CFTNENGRDEPFWMGCYGIGVSRLAQAAVEQHHDDGGIRWPAAIAPYEVIVVIANNHDDA 510

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +YA L + G DV  DD  E+ G +F  ADL+G P ++++G +  ++  VE+  
Sbjct: 511 QTDLGDTVYATLLEAGIDVLLDDRKERAGVKFKDADLIGIPWRLVIG-RDAAEGTVELVQ 569

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       +   E I        
Sbjct: 570 RSNREMRKLPHGEAIGELLKALR 592


>gi|332708267|ref|ZP_08428248.1| threonyl-tRNA synthetase [Lyngbya majuscula 3L]
 gi|332352932|gb|EGJ32491.1| threonyl-tRNA synthetase [Lyngbya majuscula 3L]
          Length = 605

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 159/444 (35%), Gaps = 45/444 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L          G+  W P G      +   +++EQ + G + +  
Sbjct: 194 EALKRDHRKLGKELGLFI-FSDPVGPGLPLWTPKGTVLRTLLEDFLKQEQVKRGYLPVVT 252

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRND------KAMIYGPTHEEVMTDIFRSHIKSY 125
           P +   DL+  SG + +Y ++M  +   ++      +  +  P +      I++S ++SY
Sbjct: 253 PHIGRVDLFKVSGHWQNYKEDMFPMMAEDEEAAAAEQGFVLKPMNCPFHIQIYKSELRSY 312

Query: 126 RNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +    +R E     G + R R F + D++ F + P+     +  +    L +
Sbjct: 313 RELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVM-PDQLDQEFLSVVDLILSV 371

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L +K+   R                  D    +   S    +    +     D +  
Sbjct: 372 FKSLQMKNFKARLSFR--------------DPASDKYIGSDQAWEKAQSAIRRAVDTLGM 417

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            +       A Y    D   + + D          R  ++G +      Y+LP      +
Sbjct: 418 ESFEAPGEAAFYGPKLDFIFQDILD----------REWQLGTV---QVDYNLPERFDLEY 464

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     + +     G++  +  ++   + G    W   +AP +  L+ +       
Sbjct: 465 VAEDGTRQRPIMIHRAPFGSLERLTGILIEQYGGDFPFW---LAPVQARLLPVG---DAQ 518

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++ A++   G     D  GE++G     A+    P+  +VG+K V  + + I+ R
Sbjct: 519 LPFAQEVAAKMRSHGIRAEVDTSGERLGKAIRNAEKAKIPVMSVVGAKEVEANSLNIRTR 578

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    M +++V+        N 
Sbjct: 579 AAGELGMMPIDQVVEKMEQANRNR 602


>gi|257084658|ref|ZP_05579019.1| prolyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256992688|gb|EEU79990.1| prolyl-tRNA synthetase [Enterococcus faecalis Fly1]
          Length = 572

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +     +     +D   L ++         +  D+   +  D  P+   V
Sbjct: 340 EDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGV 399

Query: 278 S--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E + D 
Sbjct: 400 LAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +FA A
Sbjct: 460 RGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 520 DLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|150019972|ref|YP_001305326.1| prolyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|166980168|sp|A6LJ40|SYP_THEM4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149792493|gb|ABR29941.1| prolyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 564

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 105/228 (46%), Positives = 153/228 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+ENP DAEI S  L+ R G I + + G+Y++LPL ++ L  +  I+REE
Sbjct: 1   MRFSQLYAPTLRENPADAEIPSQALLQRAGFIRKIAAGVYTYLPLARRTLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW++SGR+D YG EM++L DR+++    GPTHEE++T++ ++
Sbjct: 61  MDRIGAQEILMPIIQPAELWIKSGRWDDYGPEMMKLKDRHNRDFTLGPTHEELVTELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQI  K+RDE+RPRFGV+R+REF+MKDAYSF  + E     Y K   +
Sbjct: 121 ELNSYKQLPVTLYQIANKYRDEIRPRFGVLRAREFIMKDAYSFHDSWESLDEVYKKFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y RI  R+GL+   + A SG IGG  SHEF+  A+ GE+ +       
Sbjct: 181 YSRILERIGLRYTVIEASSGAIGGKESHEFVAFAEYGESNILYCDCGY 228



 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 115/268 (42%), Gaps = 24/268 (8%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I    G+         GP+G        ++AD G       K   +F +     ++  
Sbjct: 319 ENILEDFGVP----IGFLGPVGISN---VKIVADKG------IKYMKNFVVGGMKKNYHY 365

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I        Q             E     +      S RGIE+GHIF  GTKYS  M   
Sbjct: 366 INVNLERDFQVEEWADLVVVNPGEPC--PVCGKPLKSERGIELGHIFKLGTKYSETMDVK 423

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   DGK     MG YG G  R + A++E  HD  GIIWP SVAP+++ +  +   ++  
Sbjct: 424 YMNKDGKMKPFIMGCYGWGISRTLGAIVEQLHDDNGIIWPVSVAPYEVVITVVGKENEKS 483

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               EK+Y  L   G DV  DD     G +F  ADL+GFPL++ +G K   D KVE+K R
Sbjct: 484 --FAEKLYRYLLDKGVDVLIDDRDVSPGVKFKDADLIGFPLRITIG-KSYKDGKVELKER 540

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  +    + EEVI        N + +L
Sbjct: 541 VGNVTIIEADEEVI------LKNVQHIL 562


>gi|229549443|ref|ZP_04438168.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255972147|ref|ZP_05422733.1| prolyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|257421971|ref|ZP_05598961.1| prolyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|312953422|ref|ZP_07772262.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|229305680|gb|EEN71676.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255963165|gb|EET95641.1| prolyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|257163795|gb|EEU93755.1| prolyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|310628631|gb|EFQ11914.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315152090|gb|EFT96106.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155317|gb|EFT99333.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315159106|gb|EFU03123.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|327535671|gb|AEA94505.1| proline--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 572

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +     +     +D   L ++         +  D+   +  D  P+   V
Sbjct: 340 EDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGV 399

Query: 278 S--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E + D 
Sbjct: 400 LAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +FA A
Sbjct: 460 RGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 520 DLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|227553916|ref|ZP_03983963.1| prolyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|255975215|ref|ZP_05425801.1| prolyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256617163|ref|ZP_05474009.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256763073|ref|ZP_05503653.1| prolyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256961317|ref|ZP_05565488.1| prolyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256963555|ref|ZP_05567726.1| prolyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257082033|ref|ZP_05576394.1| prolyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257416590|ref|ZP_05593584.1| prolyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257419837|ref|ZP_05596831.1| prolyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|293383602|ref|ZP_06629512.1| proline--tRNA ligase [Enterococcus faecalis R712]
 gi|293387285|ref|ZP_06631842.1| proline--tRNA ligase [Enterococcus faecalis S613]
 gi|307271494|ref|ZP_07552766.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277205|ref|ZP_07558309.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307285834|ref|ZP_07565968.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312899806|ref|ZP_07759125.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312906152|ref|ZP_07765164.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312909497|ref|ZP_07768352.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|227176902|gb|EEI57874.1| prolyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|255968087|gb|EET98709.1| prolyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256596690|gb|EEU15866.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256684324|gb|EEU24019.1| prolyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256951813|gb|EEU68445.1| prolyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256954051|gb|EEU70683.1| prolyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256990063|gb|EEU77365.1| prolyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257158418|gb|EEU88378.1| prolyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|257161665|gb|EEU91625.1| prolyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|291079114|gb|EFE16478.1| proline--tRNA ligase [Enterococcus faecalis R712]
 gi|291083322|gb|EFE20285.1| proline--tRNA ligase [Enterococcus faecalis S613]
 gi|295113413|emb|CBL32050.1| prolyl-tRNA synthetase, family II [Enterococcus sp. 7L76]
 gi|306502595|gb|EFM71862.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306506135|gb|EFM75301.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306511766|gb|EFM80764.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|310627798|gb|EFQ11081.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311290170|gb|EFQ68726.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311293056|gb|EFQ71612.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315146006|gb|EFT90022.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315146660|gb|EFT90676.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315161730|gb|EFU05747.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315166430|gb|EFU10447.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315170318|gb|EFU14335.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315173646|gb|EFU17663.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1346]
 gi|315574384|gb|EFU86575.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315580142|gb|EFU92333.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 572

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +     +     +D   L ++         +  D+   +  D  P+   V
Sbjct: 340 EDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGV 399

Query: 278 S--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E + D 
Sbjct: 400 LAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +FA A
Sbjct: 460 RGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 520 DLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|206900126|ref|YP_002250745.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206739229|gb|ACI18287.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 638

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 146/436 (33%), Gaps = 43/436 (9%)

Query: 17  DAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +A+   H+ + R   I     +   G+  + P G      +    R+E  + G + +  P
Sbjct: 233 EAQRRDHRKLGRELEIFDTFEEAGPGLIFYPPKGAMLRLIIEEFERKEHLKRGYLPVITP 292

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L  A+LW  SG +D+Y + M  L    DK     P +      I+ S ++SYR+LP  F
Sbjct: 293 HLMQAELWKRSGHWDNYRENMFFLQVE-DKDYAVKPMNCPGHILIYNSKVRSYRDLPLRF 351

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           +++   +R E      G+ R+R F   DA+ F  T E  +     +      +    GLK
Sbjct: 352 FEMGTVYRYERSGVLYGLERARGFTQDDAHIF-CTQEQLEDEIKGVLDFVFYMLDSFGLK 410

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A         S          E                
Sbjct: 411 DYVVTLSTKPEKYIGSDEIWEKATQALKNALESVGIDYRIAEGEG--------------- 455

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                A      +  L   L +  +     ++    F    ++      T+   DG K  
Sbjct: 456 -----AFYGPKIDVGLKGLLGKMWQGPTIQVD----FNLPERF----DLTYDAPDGTKKR 502

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G+      ++   + G+  +W   +AP ++ ++ I    +   +  E +  
Sbjct: 503 PVMIHRAILGSYERFIGILIEHYGGRFPLW---LAPEQVRILPI---SEKHNEYAEYVLR 556

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L         D    ++  +   A     P   IVG K   + KV ++           
Sbjct: 557 TLRDNEIRAEIDKDQAKLNYKLRKAIAEKVPYIFIVGDKEKEEGKVSVRIH-NKDLGVFD 615

Query: 431 LEEVINYASHRFSNNR 446
           L  VI        + +
Sbjct: 616 LSYVIAKLLEEIKSKK 631


>gi|257087410|ref|ZP_05581771.1| prolyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995440|gb|EEU82742.1| prolyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|315025439|gb|EFT37371.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 572

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +     +     +D   L ++         +  D+   +  D  P+   V
Sbjct: 340 EDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGV 399

Query: 278 S--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E + D 
Sbjct: 400 LAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +FA A
Sbjct: 460 HGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 520 DLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|315032880|gb|EFT44812.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315150170|gb|EFT94186.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0012]
          Length = 572

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 3/227 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E     +   +     +     +D   L ++         +  D+   +  D  P+ 
Sbjct: 337 NVAEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDG 396

Query: 275 KRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E +
Sbjct: 397 NGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQN 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +F
Sbjct: 457 ADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           A ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 517 ADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|318056620|ref|ZP_07975343.1| prolyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318080757|ref|ZP_07988089.1| prolyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 563

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 140/226 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTEEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +IF RLGL    + A SG +GG  S EF+  A  GE       + 
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFADCPNC 231



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 99/229 (43%), Gaps = 6/229 (2%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G    + +   +                  ++V           DV   +  D  P  
Sbjct: 338 PQGLKIRYIADPRVAPGTAWVTGANKPDTHARNVVAGRDFEVDDYLDVVVVEEGDPCPNC 397

Query: 275 KR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +     R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E +
Sbjct: 398 GQGLHLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQT 457

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            D KG+ WP  V+P  + ++   A   +  +   +I  +L+  G  V  DD  G   G +
Sbjct: 458 ADDKGLCWPAEVSPADVHVV--AAGKVLQTELALEIADKLAAAGARVLVDDRAGVSPGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           F  A+L+G P  VI G +      VE+K R TG RE++S+EE +   + 
Sbjct: 516 FTDAELIGVPKTVIAGRRSAE-GIVELKDRRTGEREELSVEEAVARLTA 563


>gi|268678723|ref|YP_003303154.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616754|gb|ACZ11119.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 605

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++ +++E   RD     ++L L T    +   G+  WLP G K    +  ++     +
Sbjct: 198 KDYVTMIEEAKKRDHRKIGNELKLFT-FDDEVGAGLPIWLPQGGKLRAKLEKLLFTAHRK 256

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  +D W  SG Y +YG+ M      ++      P +      +F+S ++
Sbjct: 257 RGYQPVRGPEILKSDAWKISGHYQNYGENMY-FTVIDEAEYGIKPMNCLGHIKVFQSEVR 315

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F  TP+  K +  ++     
Sbjct: 316 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIF-CTPDQIKENVLEILSFVD 374

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    G     M   + P        +   A  G                     +   
Sbjct: 375 SIMKTFGFHY-EMEISTRPEKSIGDERYWEAATQGLKNALDENGITYGIDEGGGAFYGPK 433

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 434 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPERFDI 463

Query: 301 TFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++  A+ +    V +    +G+      ++     G+   +   +AP ++ ++ I     
Sbjct: 464 SYVDANNEHARPVMLHRAILGSFERFIGILIEHTSGEFPFF---LAPTQVVIVPI---SD 517

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   L     DV      E +  +   A+ +  P+ +++G   V +  V ++
Sbjct: 518 AHLEYAKSVANALMAEEIDVEVSSKNESLNKRIRNAETMRVPMILVIGDAEVENQSVAVR 577

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    + ++S  E+I     + S 
Sbjct: 578 DRRERTQYNLSKVELIKTLKEKLSE 602


>gi|229545199|ref|ZP_04433924.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256853721|ref|ZP_05559086.1| prolyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|257079587|ref|ZP_05573948.1| prolyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294779463|ref|ZP_06744861.1| proline--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|307270862|ref|ZP_07552149.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307287732|ref|ZP_07567775.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|307291052|ref|ZP_07570938.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|229309744|gb|EEN75731.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256710664|gb|EEU25707.1| prolyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256987617|gb|EEU74919.1| prolyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294453469|gb|EFG21873.1| proline--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|306497901|gb|EFM67432.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|306501470|gb|EFM70773.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306512775|gb|EFM81420.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|315030982|gb|EFT42914.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 572

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 3/227 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E     +   +     +     +D   L ++         +  D+   +  D  P+ 
Sbjct: 337 NVAEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDG 396

Query: 275 KRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E +
Sbjct: 397 NGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQN 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +F
Sbjct: 457 ADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           A ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 517 ADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|316974411|gb|EFV57903.1| proline--tRNA ligase [Trichinella spiralis]
          Length = 413

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 204/440 (46%), Gaps = 54/440 (12%)

Query: 21  ASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
            S +LML  G+I     KG++ +LP+G +AL+ +  IIR E +  GA  M++  L    +
Sbjct: 4   KSQRLMLDNGLIEYVGGKGLFHYLPVGLRALEKLCIIIRHEMDLLGAGRMALSNLCERSV 63

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR--SHIKSYRNLPFTFYQIQL 137
           W ++GR++    E+LRL DR  K     PTHEE +T +    S I S R LP   YQI L
Sbjct: 64  WEQTGRWEEVSAELLRLKDRKGKEYCLCPTHEESVTSLISRFSPITSSR-LPLLLYQITL 122

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           K+RDE  PRFG+ R+REF MKD YSFDL  + +  +Y+ +  +Y  IF  LG+K   + A
Sbjct: 123 KYRDEPNPRFGLARAREFFMKDMYSFDLDTKSAMKTYDAVNKAYFSIFQTLGIKVHRVEA 182

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             G IGG+LSHEF   +  GE  +   +            +       N   ++      
Sbjct: 183 AVGSIGGNLSHEFHCESQYGEDYILMCEKCQKKFTEEVLVNSTTCPVCNEPFQKV----- 237

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                 R +E+ H F+ G KYS  + AT     G    +QMG +
Sbjct: 238 ----------------------RSLELAHTFFLGEKYSQALGATVTCNPGSPIPLQMGCF 275

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV------CRDACEKIYAR 371
           GIG  R++AA+++     + I WP  +AP+K+ +I  K   +            E++ + 
Sbjct: 276 GIGISRLLAAIVDYFSSDEEIRWPLCIAPYKVCVIPPKNGSREYPATPMALHLAEQL-SS 334

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV--------EIKHRL 422
           L+    ++ +DD     +G++   A   G+P  ++      ++  V        E+    
Sbjct: 335 LANFNEEIVYDDRTHQTVGTRLRDAKRRGYPYVIV------ANKTVFNKSSPKFELHCTA 388

Query: 423 TGIREDMSLEEVINYASHRF 442
           T    +++  E+      RF
Sbjct: 389 TDEVLEVTHAELFQ-LKRRF 407


>gi|298346881|ref|YP_003719568.1| threonyl-tRNA synthetase [Mobiluncus curtisii ATCC 43063]
 gi|298236942|gb|ADI68074.1| threonyl-tRNA synthetase [Mobiluncus curtisii ATCC 43063]
          Length = 669

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 149/457 (32%), Gaps = 51/457 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD     ++L L +    +   G+  + P G      +    R      
Sbjct: 247 EYVTRMEEAAKRDHRRLGNELDLFS-FPEEIGSGLAVFHPKGAMVRMEMENYSRRRHLEE 305

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEE 112
           G   +  P +    L+  SG  + Y   M      +++                 P +  
Sbjct: 306 GYSFVYTPHVTKGQLFETSGHLEWYKDGMFPPMRVDEECDDQGNVTKEGFDYYLKPMNCP 365

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   I++S  +SYR LP   ++    +R E      G+ R R F   D++ +  T E  K
Sbjct: 366 MHNLIYKSRSRSYRELPLRLFEFGTVYRYEKSGVVHGLTRGRGFTQDDSHIY-CTREQMK 424

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
               K+    L +    GL    +   +  P     S E    A     +V  +      
Sbjct: 425 DELTKLLTFVLDLLKDYGLDDFYLELSTKNPHKFVGSDEIWEEATNTLAEVATASGLELV 484

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           P P                       A      + +  D++    ++S   ++    F  
Sbjct: 485 PDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNL 520

Query: 291 GTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG +   V +     G++     V+   + G    W   +AP ++
Sbjct: 521 PERF----DLEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQV 573

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L+ +    +   D CE I  RL      V  D   ++ G +   A     P  +I G +
Sbjct: 574 RLVPVA---EAFNDYCEDIANRLRAENVRVEVDTTDDRFGKKIRNAAKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + V  ++R    +  + +++ I        + R
Sbjct: 631 DAEANAVSFRYRGGEQKNGVPIDQAIAEILEVIRSRR 667


>gi|256956661|ref|ZP_05560832.1| prolyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|257090544|ref|ZP_05584905.1| prolyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300861128|ref|ZP_07107215.1| proline--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|312903702|ref|ZP_07762876.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256947157|gb|EEU63789.1| prolyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256999356|gb|EEU85876.1| prolyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300850167|gb|EFK77917.1| proline--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|310632894|gb|EFQ16177.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315035640|gb|EFT47572.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315578695|gb|EFU90886.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 572

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +     +     +D   L ++         +  D+   +  D  P+   V
Sbjct: 340 EDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGV 399

Query: 278 S--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E + D 
Sbjct: 400 LAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +GI WP  +APF + ++ +   D+      +++ A + + G +V  DD  E+ G +FA A
Sbjct: 460 RGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMIEAGYEVLVDDRNERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 520 DLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|188588550|ref|YP_001919768.1| threonyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|238689641|sp|B2UYW3|SYT_CLOBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188498831|gb|ACD51967.1| threonyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 643

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 161/449 (35%), Gaps = 39/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T       +G+   +P G K +  +   + +E+ 
Sbjct: 226 LDEYLEAIEEAKKRDHNKLGRELKLFT-TDENVGQGLPLLMPKGAKIVQTLQRWVEDEEE 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
           R G +    P +  +DL+  SG +D Y   M  L D   +++     P        I+ +
Sbjct: 285 RRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDEEVFALRPMTCPFQYTIYNA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    FR+E      G++R R+F + D +   +TPE  +  +  +  
Sbjct: 345 EQHSYRDLPIRYGETSTLFRNESSGEMHGLIRVRQFTLADGHLI-VTPEQLEEEFKGVLE 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +   LG+              D+S+ F    D   T+ + +               
Sbjct: 404 LIQYLMKTLGIDE------------DISYRFS-KWDPNNTEKYINDPEAWNKTQDTMRTI 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            D + +N +               +E  F     + +      +   +F     ++L   
Sbjct: 451 LDHLKINYVEAD------------DEAAFYGPKLDLQCRNVHGKEDTLFTVQIDFALAER 498

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++   +G K     +    IG      A++   + G    W   ++P ++ ++ I  
Sbjct: 499 FDMSYIDKNGEKKRPYIIHRSSIGCYERTLAMLIEKYAGAFPTW---LSPVQVKVLPI-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E +   L   G  +  D   E+IG +   A L   P  ++VG K  ++++V
Sbjct: 554 -SDKYNDYAESVVKSLRNKGVRIEADYRAEKIGYKIREARLERTPYILVVGEKEAANNEV 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       + L+       +  +  
Sbjct: 613 SVRSRKNDDEGAIKLDAFTERLLNEIATK 641


>gi|333024111|ref|ZP_08452175.1| putative prolyl-tRNA synthetase [Streptomyces sp. Tu6071]
 gi|332743963|gb|EGJ74404.1| putative prolyl-tRNA synthetase [Streptomyces sp. Tu6071]
          Length = 563

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 140/226 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +IF RLGL    + A SG +GG  S EF+  A  GE       + 
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFADCPNC 231



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 99/229 (43%), Gaps = 6/229 (2%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G    + +   +                  ++V           DV   +  D  P  
Sbjct: 338 PQGLKIRYIADPRVAPGTAWVTGANKPDTHARNVVAGRDFEVDDYLDVVVVEEGDPCPNC 397

Query: 275 KR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +     R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E +
Sbjct: 398 GQGLHLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQT 457

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            D KG+ WP  VAP  + ++   A   +  +   +I  +L+  G  V  DD  G   G +
Sbjct: 458 ADDKGLCWPAEVAPADVHVV--AAGKVLQTELALEIADKLAAAGARVLVDDRAGVSPGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           F  A+L+G P  VI G +      VE+K R TG RE++S+EE +   + 
Sbjct: 516 FTDAELIGVPKTVIAGRRSAE-GIVELKDRRTGEREELSVEEAVARLTA 563


>gi|302522218|ref|ZP_07274560.1| prolyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302431113|gb|EFL02929.1| prolyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 563

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 140/226 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +IF RLGL    + A SG +GG  S EF+  A  GE       + 
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFADCPNC 231



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 99/229 (43%), Gaps = 6/229 (2%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G    + +   +                  ++V           DV   +  D  P  
Sbjct: 338 PQGLKIRYIADPRVAPGTAWVTGANKPDTHARNVVAGRDFEVDDYLDVVVVEEGDPCPNC 397

Query: 275 KR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +     R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E +
Sbjct: 398 GQGLHLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQT 457

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            D KG+ WP  V+P  + ++   A   +  +   +I  +L+  G  V  DD  G   G +
Sbjct: 458 ADDKGLCWPAEVSPADVHVV--AAGKVLQTELALEIADKLAAAGARVLVDDRAGVSPGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           F  A+L+G P  VI G +      VE+K R TG RE++S+EE +   + 
Sbjct: 516 FTDAELIGVPKTVIAGRRSAE-GIVELKDRRTGEREELSVEEAVARLTA 563


>gi|108757584|ref|YP_630572.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|108461464|gb|ABF86649.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 400

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 146/434 (33%), Gaps = 44/434 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L    + + + G+  W P G      +   +R+   R G  E+  P L +
Sbjct: 6   DHRALGQRLDLF--HLQEEAPGMVFWHPRGLVLYRLLEEHVRQRMRREGYQEVRTPQLYA 63

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW  SG +D++ + M  + D   + +   P       ++ +    SYR+LP    +  
Sbjct: 64  QPLWERSGHWDNFRENMFLVED-GARHLGVKPVSCPGHIELVQRMAPSYRDLPLRLGEFG 122

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R E      G+ R R+F   D + F   P+       +   S    +   G   + +
Sbjct: 123 LVHRAEPGGALHGLFRLRQFTQDDGHIFCAEPQVVPEVV-RFARSLKDFYAGFGFDDVQV 181

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                P       E    A++                P E   +   +            
Sbjct: 182 AFSGRPASRAGRDELWDKAESWLLLAAKEAGLQCHMQPGEGAFYGPKLEF---------- 231

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQM 314
                              K    R  + G I              +  A G +   V +
Sbjct: 232 -----------------VLKDRLGRAWQCGTI-QLDLVLPERFDLHYVDASGARVRPVML 273

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++     V+   H G     P  +AP ++ + ++    +   D  E+  A+L +
Sbjct: 274 HRALLGSLERFIGVMLEHHGGA---LPPWLAPQQVVVASVG---EGAADYAERFAAKLQE 327

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            GC    D  GE +  +   A   G P  V+ G++ V+   V ++ R  G + D+  E+ 
Sbjct: 328 AGCRASVDRRGESLSRKVLDAHAAGVPWLVVAGAREVAAGNVRLRQRD-GAQRDVPWEDA 386

Query: 435 INYASHRFSNNRPV 448
              A+   ++ RP 
Sbjct: 387 ---AAELVASCRPA 397


>gi|313891975|ref|ZP_07825576.1| proline--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313119618|gb|EFR42809.1| proline--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 574

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/224 (45%), Positives = 145/224 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +A + SHK ML+ GMI + S G YS+LPL  +++  +  II EE
Sbjct: 1   MKASKLYAPTLREIPSEAVVISHKYMLKAGMIRKISSGFYSYLPLAWRSIKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +   Q A++W ++GR+D YG+EM RL DR+++     PTHEE++T +   
Sbjct: 61  MAKIESQEILMSIAQPAEIWQQTGRWDVYGEEMFRLKDRHERDYCLAPTHEELVTTLVHM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 121 DTFSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDVDEEGLDKQYHDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF + GL    + A+SG IGG  SHEF VLA+ GE  +   
Sbjct: 181 YTNIFTKCGLNFRTVIADSGAIGGSSSHEFEVLAEAGEADIVYE 224



 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 21/281 (7%)

Query: 170 SKHSYNKMFV--SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            ++ YN + V  +  +   ++GL    +     PIG   + +F ++ D    +       
Sbjct: 304 LQNIYNAINVSMATEKDLKKVGL----VAGYISPIGLKKNKDFDIIVDKTVME------M 353

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            D    +   D   I                     N+         +    +GIEVG +
Sbjct: 354 KDACCGANIKDKHYIHVNPKRDFNSVRIETIRLIDKNDVS--PWTGKEIEFKKGIEVGQV 411

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F  GTKYS  ++ T+   +GK   + MG YGIG  R +AA IE +HD  GIIW  S+AP+
Sbjct: 412 FKLGTKYSESLNCTYLDKNGKSKPMVMGCYGIGVTRTMAASIEQNHDKDGIIWAVSIAPY 471

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++ +I     +       E++Y  +SK   ++ +DD  E+ G +F  ADL+G+P++V +G
Sbjct: 472 EVVIIPANNKNSEVMKVAEELYRNMSKENNEIVFDDRNERAGIKFKDADLIGYPIRVTIG 531

Query: 408 SKFVSDSKVEIKHRLTGIREDM-------SLEEVINYASHR 441
            K+  + KVEIK R TG   ++        +E +++    +
Sbjct: 532 KKWEENGKVEIKIRRTGEVIEIDYKDCKAKVESILDDLRSK 572


>gi|315656661|ref|ZP_07909548.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492616|gb|EFU82220.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 669

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 149/457 (32%), Gaps = 51/457 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD     ++L L +    +   G+  + P G      +    R      
Sbjct: 247 EYVTRMEEAAKRDHRRLGNELDLFS-FPEEIGSGLAVFHPKGAMVRMEMENYSRRRHLEE 305

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEE 112
           G   +  P +    L+  SG  + Y   M      +++                 P +  
Sbjct: 306 GYSFVYTPHVTKGQLFETSGHLEWYKDGMFPPMRVDEECDDQGNVTKEGFDYYLKPMNCP 365

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   I++S  +SYR LP   ++    +R E      G+ R R F   D++ +  T E  K
Sbjct: 366 MHNLIYKSRSRSYRELPLRLFEFGTVYRYEKSGVVHGLTRGRGFTQDDSHIY-CTREQMK 424

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
               K+    L +    GL    +   +  P     S E    A     +V  +      
Sbjct: 425 DELTKLLTFVLDLLKDYGLDDFYLELSTKNPHKFVGSDEIWEEATNTLAEVATASGLELV 484

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           P P                       A      + +  D++    ++S   ++    F  
Sbjct: 485 PDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNL 520

Query: 291 GTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG +   V +     G++     V+   + G    W   +AP ++
Sbjct: 521 PERF----DLEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQV 573

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L+ +    +   D CE I  RL      V  D   ++ G +   A     P  +I G +
Sbjct: 574 RLVPVA---EAFNDYCEDIANRLRAENVRVEVDTTDDRFGKKIRNAAKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + V  ++R    +  + +++ I        + R
Sbjct: 631 DAEANAVSFRYRGGEQKNGVPIDQAIAEILEVIRSRR 667


>gi|290957026|ref|YP_003488208.1| prolyl tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260646552|emb|CBG69649.1| prolyl tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 567

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/238 (43%), Positives = 142/238 (59%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + G+++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGVWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T I +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEATGRWDEYGPELFRLKDRKGGDYLLGPTHEEIFTLIVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQTKFRDEARPRAGILRGREFLMKDSYSFDTEDEGLAQSYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            ++F RLGL      A +G +GG  S EF+  A  GE   F      DF   +E   F
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAGAGEDT-FADCPACDFAANTEAITF 244



 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 6/227 (2%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           GE   + +   +                  ++V        A  DV   +  D  P    
Sbjct: 344 GEKVTYVADPRVAPGTAWITGANKPGTHAKNVVAGRDFEVGAYVDVVVVQEGDPCPNCGT 403

Query: 277 --VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R IE+GHIF  G KY+  +     G  GK   V MGSYGIG  R VAA+ E S D
Sbjct: 404 GLKLDRAIEIGHIFQLGRKYADALKLDVLGQHGKPVRVTMGSYGIGVSRAVAALAEQSAD 463

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
            KG+ WP  VAP  + ++   A   +  +    +  +L   G  V  DD  G   G +F 
Sbjct: 464 DKGLCWPAEVAPADVHVV--AAGKALQTELALDVSEKLRAAGLRVLVDDRAGVSPGVKFT 521

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            ++L+G P  ++ G +      +E+K R TG RE+++++E I   + 
Sbjct: 522 DSELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVDEAIARLTA 567


>gi|217076405|ref|YP_002334121.1| prolyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|226701439|sp|B7IFB6|SYP_THEAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217036258|gb|ACJ74780.1| prolyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 561

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/228 (45%), Positives = 153/228 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEI S  L+ R G I + + G+Y++LPL ++ L  +  I+REE
Sbjct: 1   MRFSRLYAPTLREDPSDAEIPSQALLQRAGFIRKIAAGVYTYLPLARRTLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW  SGR+D YG EM++L DR+++    GPTHEE++T++ R+
Sbjct: 61  MDKIGAQEILMPIIQPAELWQRSGRWDDYGPEMMKLKDRHNRDFTLGPTHEELVTELIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQI  KFRDE+RPRFGV+R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELNSYKQLPVSLYQITTKFRDEIRPRFGVLRAREFIMKDAYSFHDSWESLDETYQLFKDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y +I  R+GL+   + A +G IGG+ SHEF+  A+TGE+ V       
Sbjct: 181 YSKIMERIGLRYSVIEAATGAIGGNESHEFVAFANTGESNVLYCDCGY 228



 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 23/262 (8%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I    G+         GP+G D      ++AD G       K   +F +     D+  
Sbjct: 319 EEILEEFGVP----IGFLGPVGADK---VRIVADYG------IKYMKNFVVGGMEKDYHY 365

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMS 299
           +    ++           +D+   ++ D  P   +     +GIE+GHIF  GTKYS  M 
Sbjct: 366 L----NVNLDRDFKVNEWTDLVVVQIGDPCPVCGKPLKGEKGIELGHIFKLGTKYSDSMD 421

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             +   DGK     MG YG G  R + A++E  HD  GIIWP SVAP+++ ++ +    +
Sbjct: 422 VKYMDKDGKMKSFIMGCYGWGISRTLGAIVEQLHDDDGIIWPRSVAPYEVDIVVVGKEKE 481

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  K+Y+ L   G DV  DD     G +F  ADL+GFP+++ VG K + + KVEIK
Sbjct: 482 KEFSE--KLYSYLLDKGVDVIIDDRNVSPGVKFKDADLIGFPIRITVGRK-LKEGKVEIK 538

Query: 420 HR-LTGIREDMSLEEVINYASH 440
            R    I  D ++E+++N  + 
Sbjct: 539 ERGKEAILVDANMEQILNAINE 560


>gi|86741833|ref|YP_482233.1| threonyl-tRNA synthetase [Frankia sp. CcI3]
 gi|86568695|gb|ABD12504.1| Ser-tRNA(Thr) hydrolase [Frankia sp. CcI3]
          Length = 701

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 142/447 (31%), Gaps = 40/447 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 291 YQTRLAEAEKRDHRKLGAELDLFS-FPTEIGPGLAVFHPRGGAIRTAMEDYSRRRHIEAG 349

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
              ++ P +  ++L+  SG  D + + M               P +  +   IFRS  +S
Sbjct: 350 YSFVNTPHITKSELYQISGHLDWFAEGMYPPMQLDGGTDYYLKPMNCPMHILIFRSRGRS 409

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP   ++    +R E      G+ R R     DA+ F    E      + +    L 
Sbjct: 410 YRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAR-EQLPTELDSVLTFVLG 468

Query: 184 IFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +    GL    +   + P G    + E    A     +    +D      P         
Sbjct: 469 LLRDFGLTDFYLELSTRPAGKAVGTDEEWAQATELLREAAQKQDLELVMDPGGG------ 522

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + +  D++    ++S   ++    F    ++       +
Sbjct: 523 --------------AFYGPKISVQARDAIGRTWQLSTIQVD----FQLPRRF----GLEY 560

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG       +     G +    A++   + G     P  +AP ++  I I       
Sbjct: 561 QAADGTRQRPFMIHRALFGTIERFFAILLEHYAGA---LPPWLAPVQVVGIPIT---DEH 614

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++  RL+  G  V  D   +++  +   A     P  ++ G   V+   V  + R
Sbjct: 615 VPYLDEVARRLAAHGLRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDSDVAQGAVSFRFR 674

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
               R  + ++E +          R V
Sbjct: 675 DGTQRNGVPVDEAVAEILDAVERRRQV 701


>gi|88807669|ref|ZP_01123181.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88788883|gb|EAR20038.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 598

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 151/237 (63%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I +   GIY++LP+  + L  +NAI+R+E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIPSHQLLVRGGYIRRIGAGIYAYLPMMWRVLRKINAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P LQ ADLW  SGR+  Y      M  L DR ++ +  GPTHEEV+T++
Sbjct: 61  LDSLGALETLLPQLQPADLWERSGRWQGYTAGEGIMFHLEDRQNRQLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    +  + +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANQDDLEGTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL+++ + A+SG IGG  S E++V A+ GE  +  S D +      
Sbjct: 181 AAAYARIFKRCGLEAVAVDADSGAIGGAASQEYMVTAEAGEDLILTSSDGLYAANQE 237



 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/265 (28%), Positives = 109/265 (41%), Gaps = 9/265 (3%)

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC--SKDFMDFPIPSENTDFDDIISLN 246
           GL  +P     G IG DLS   +  + T +T          +D        +  D     
Sbjct: 339 GLSELPF----GSIGPDLSDTALRGSRTWQTHFLRLADATALDLSRFVCGANSRDQHVWG 394

Query: 247 SIVEQWTAPY-AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
              +       A     H  +     P     + RGIEVGHIF  G KYS  + A F  +
Sbjct: 395 RTWDAIPTQIRADLRTAHPGEQCVHDPSQTLSACRGIEVGHIFQLGRKYSEALDARFTNS 454

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G+   + MG YGIG  R+  A +E  HD  GI WP  +APF++ ++  K  D       
Sbjct: 455 AGQQEALLMGCYGIGISRLAQAAVEQHHDDAGICWPVGIAPFQVIVVIAKMKDSNQVALG 514

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +Y      G D   DD  E+ G +F  ADL+G P +++VG +   D +VE+  R    
Sbjct: 515 EGLYQSFLDAGIDALLDDRDERAGVKFKDADLIGIPWRIVVG-RDAGDGEVEVVERSACK 573

Query: 426 REDMSLEEVINYASHRFSNN-RPVL 449
              M  ++          N  RP +
Sbjct: 574 STTMDHQKAYRQVKESILNTLRPEI 598


>gi|330936741|gb|EGH40917.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 548

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/202 (52%), Positives = 147/202 (72%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +LMLR GMI + + G+Y+WLP+G + L  V AI+REE +  GA+E+ +P +Q A+LW ES
Sbjct: 1   QLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREEMDAAGALEILMPGIQPAELWQES 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR++ YG E++RL DR+++    GPTHEEV+TD+ R+ + SY+ LP   YQIQ KFRDE+
Sbjct: 61  GRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARNELNSYKQLPINLYQIQTKFRDEI 120

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPRFG+MR REF+MKDAYSF    E  + +Y++M ++Y  IF RLGLK  P+ A++G IG
Sbjct: 121 RPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLAYSNIFTRLGLKFRPVEADNGSIG 180

Query: 204 GDLSHEFIVLADTGETQVFCSK 225
           G  SHEF VLA++GE  +  S 
Sbjct: 181 GAGSHEFHVLAESGEDDIVFSD 202



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 341 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 401 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 460

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P +++V  + +++  +
Sbjct: 461 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 520

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 521 EYKSRTESQPQAIAVADVLSFIQGKVN 547


>gi|154174749|ref|YP_001407384.1| threonyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|171769252|sp|A7GVZ2|SYT_CAMC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112802358|gb|EAT99702.1| threonyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 606

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 154/439 (35%), Gaps = 44/439 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      ++ L  G   +   G+  WLP G +    +  I+ +     G   +
Sbjct: 205 IEEAKKRDHRKLGVEMKLF-GFDEEVGGGLPIWLPNGGRLRSKLEQILYKAHRDRGYEPV 263

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  AD+W  SG Y +Y + M      +D      P +      ++++ I+SYR+LP
Sbjct: 264 RGPELLKADVWKRSGHYANYKENMY-FTTIDDAEYGIKPMNCVGHIKVYQTEIRSYRDLP 322

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F++  +  R E      G+ R REF   D++ F + P   K +  ++     +I    
Sbjct: 323 LKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCM-PSQIKQNILEILSFAGKIMQNF 381

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G +   M   + P     S E   +A     +      F           +   I +   
Sbjct: 382 GFEY-EMEISTKPAKAIGSDEIWDIATNALKEALDENGFKYGIDEGGGAFYGPKIDIKIT 440

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD 306
                                          R  + G I      ++LP      +  A+
Sbjct: 441 DA---------------------------LKRKWQCGTI---QVDFNLPERFDLGYIDAN 470

Query: 307 GKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            +    V +    +G+      ++     G+    P  +AP ++ ++ I        D  
Sbjct: 471 NERQRPVMLHRALLGSFERFIGILIEHTAGE---LPFFIAPTQVVIVPI---SDAHLDYA 524

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++I   L K   D       E +  +   A+    P+ +++G   V++  V ++ R    
Sbjct: 525 KEIARELRKFNIDSEVASKNESLNKRIRTAEKQRVPMIIVLGDNEVANRSVALRDRQART 584

Query: 426 REDMSLEEVINYASHRFSN 444
           + DMSL E +N    + S 
Sbjct: 585 QSDMSLAEFLNLTKEKLSE 603


>gi|296270051|ref|YP_003652683.1| threonyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296092838|gb|ADG88790.1| threonyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 657

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 147/449 (32%), Gaps = 43/449 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           ++ +Y   + +   RD      +L L +    +   G+  + P G      +    R   
Sbjct: 244 KQDEYLHFLEEAEKRDHRRLGVELDLFS-FPEELGSGLPVFHPKGGTIRRIMEDYSRRRH 302

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   ++ P +    L+  SG  + Y   M    +         P +  +   IFR+ 
Sbjct: 303 EEAGYSFVNTPHITKEKLYQISGHLNWYADAMFPPMELEGARYYLKPMNCPMHNLIFRAR 362

Query: 122 IKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +     +   
Sbjct: 363 GRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHIY-CTQEQMRDELRSLLRF 421

Query: 181 YLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            L +    GL    +   +  P     S E    A     +V  +++      P      
Sbjct: 422 VLDLLRDFGLNDFYLELSTKDPEKYVGSDEVWEEATRTLREVAEAENLELVLDPG----- 476

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                            A      + +  D++    ++S   ++          ++LP  
Sbjct: 477 ---------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----------FNLPEL 511

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               ++ ADG +   V +     G++     V+   + G     P  +AP ++  I I  
Sbjct: 512 FELEYQAADGTRKRPVMIHRALFGSIERFFGVLVEHYAGAF---PPWLAPVQVVGIPIT- 567

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      + +  RL +    V  D   +++  +   A     P  ++ G K V+   V
Sbjct: 568 --EAHVPYLQDVAKRLRERRIRVEVDASDDRMQKKIRNAQKAKVPYMLLAGDKDVAAGAV 625

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             ++R    +  + +++ I          
Sbjct: 626 SFRYRNGEQKNGVPIDQAIEEIVSAVERR 654


>gi|315164831|gb|EFU08848.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1302]
          Length = 572

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 3/227 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E     +   +     +     +D   L ++         +  D+   +  D  P+ 
Sbjct: 337 NVAEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDG 396

Query: 275 KRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E +
Sbjct: 397 NGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQN 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +F
Sbjct: 457 ADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           A ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 517 ADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|194477315|ref|YP_002049494.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
 gi|171192322|gb|ACB43284.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
          Length = 599

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 151/438 (34%), Gaps = 41/438 (9%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   +   ++A    H+ +   L    I  +   G+  W P G +    +    R+    
Sbjct: 185 LEEYKRRKKEALRRDHRRLGTDLDLFSIEDEAGSGLVFWHPNGARIRLLIEDFWRQSHLE 244

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    LW  SG  D Y + M      +++     P +       + S ++
Sbjct: 245 AGYELLYTPHIADIRLWKTSGHLDFYSESMFSPMQVDEREYQLKPMNCPFHVLTYASKLR 304

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + ++   +R E      G+MR R F   DA+ F L PE       ++     
Sbjct: 305 SYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHIFCL-PEQIGSEVLEVLNLTE 363

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RI          +   + P       +   LA  G  +   +K++               
Sbjct: 364 RILSAFDFTKYEINLSTRPEKFIGGDDVWDLATNGLVEALNAKNWNYKIDEGGG------ 417

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + S   ++    F    ++    +  +
Sbjct: 418 --------------AFYGPKIDLKIKDAIGRTWQCSTIQLD----FNLPERF----NIEY 455

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DG +   + +     G++     V+  S  G    W   +AP +I L+ +       
Sbjct: 456 VGSDGSRQRPIMIHRAIFGSLERFFGVMIESCAGDFPFW---LAPEQIRLLPVT---DEV 509

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++ ++L   G     D  G+++G      +    P+  +VG+K        ++ R
Sbjct: 510 ITYAEELLSQLKIAGVRASIDRTGDRLGKLIRNGEQKKIPILAVVGAKEAEVGGASLRSR 569

Query: 422 LTGIREDMSLEEVINYAS 439
             G    ++   ++  A+
Sbjct: 570 YEGELGLVNAYNLVQTAT 587


>gi|148654295|ref|YP_001274500.1| threonyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148566405|gb|ABQ88550.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Roseiflexus sp.
           RS-1]
          Length = 595

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 143/446 (32%), Gaps = 42/446 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L          G+  + P G+     + + +RE Q R G
Sbjct: 184 YLHRLEEAKRRDHRRIGKELGLFY-FSDDIGPGLPLFTPKGEMLRHLMESYVREVQTRYG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSH-IK 123
              +    +    L+ +SG Y++Y + M      +++ +    P +      +++   I 
Sbjct: 243 YQHVWTGHIVREALYKKSGHYEAYRENMFPPMVEDEEHIYRLKPMNCPSHMTLYKEMGIH 302

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E R    G+ R R     D + F   P+  +  +        
Sbjct: 303 SYRDLPLRFAEFATLYRYEDRGTLTGLTRVRALTQDDCHIF-CRPDQIEEEFGLALRLIR 361

Query: 183 RIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +          +R      GG      E   LA+                 P       
Sbjct: 362 EVLETYRFTDYRVRLSLRGAGGKYITDDEAWDLAEHALRTALDHYGVEYEEAPG------ 415

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +    D L    ++S   ++       G +Y      
Sbjct: 416 --------------EAAIYGPKADFLARDVLGREWQLSTIQVDFIQPRRLGLEY------ 455

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                DG+    V +     G+      V+   + G   +W   +AP +  +I I   D+
Sbjct: 456 --IAEDGQPRTPVVLHRAVTGSTERFLGVLIEHYAGAFPLW---LAPVQAIVIPIS--DE 508

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++  +L+     V  D   +++ ++   A L   P  +I+G +      V ++
Sbjct: 509 RHSAYAAEVGRQLTAAQLRVEVDLSKDRMQAKIRQAQLQKIPYMLIIGDREQRAGAVAVR 568

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       MS+   I  A       
Sbjct: 569 TRSGEDLGAMSVAAFIERARAEIEAK 594


>gi|256379843|ref|YP_003103503.1| prolyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255924146|gb|ACU39657.1| prolyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 581

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 136/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G YSWLPLG + L N+  ++REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGGYSWLPLGLRVLRNIERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQEIQFPALLPKEPYEATNRWTEYGPNIFRLKDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDLT EG   +Y +   +Y
Sbjct: 124 YSSYKDYPVALYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLTDEGLAEAYQRHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           ++IF RLG+  + + A SG +GG  S EF+ +A  GE     S
Sbjct: 184 IKIFDRLGMDYVIVSATSGAMGGSASEEFLAVAPNGEDTFVRS 226



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 4/177 (2%)

Query: 264 NEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  D  P+ K   V+ARGIE+GHIF  G KY+   S    G DGK   + MGSYGIG 
Sbjct: 401 EVREGDPSPDGKGVLVAARGIEIGHIFQLGRKYADAFSLDALGPDGKPVRITMGSYGIGV 460

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+VAA+ E SHD +G+IWP +VAP  + ++ +   D    +  EK+   LS  G  V  
Sbjct: 461 SRLVAAIAEQSHDDRGLIWPRNVAPADVHVV-VAGKDATLLEGGEKLAGELSSAGLSVLL 519

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           DD     G +FA A+L+G P  ++VG + ++   VE+K R +G R ++ ++E + + 
Sbjct: 520 DDRKASPGVKFADAELVGVPTILVVG-RGLASGLVEVKDRRSGERVEVPVDEAVQHV 575


>gi|221056250|ref|XP_002259263.1| threonine--trna ligase [Plasmodium knowlesi strain H]
 gi|193809334|emb|CAQ40036.1| threonine--trna ligase, putative [Plasmodium knowlesi strain H]
          Length = 888

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 154/463 (33%), Gaps = 40/463 (8%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      KL          S G   WLP G K  + +   IR E     
Sbjct: 419 YLNFLEEAKKRDHRNVGKKLHFF-FFDKDTSPGSCFWLPHGAKIYNKLVDFIRREYRIRM 477

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S DLW  SG Y +Y   M        K     P +      +F+    SY
Sbjct: 478 YDEVITPNVFSCDLWRTSGHYQNYKDCMFIFNVE-QKEWGMKPMNCPGHCIMFKQLNASY 536

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP       +  R+E+     G+ R R F   D++ F  T +  K            I
Sbjct: 537 RSLPIRLADFGVLHRNEISGSLSGLTRVRRFQQDDSHIF-CTFDQIKEEVLNTLHFIFFI 595

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
           +   G K   +   + P   IG   + +F   A+ G      S +        +   +  
Sbjct: 596 YDLFGFKY-ELFLSTRPKKFIGNISTWDF---AEQGLKDALNSANISWKINEGDGAFYGP 651

Query: 240 ------------DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH- 286
                               +  Q    +       +    +     +  + +  EV   
Sbjct: 652 KIDILLRDSINRTHQCGTIQLDFQLPCRFNLQYKNKDFGALNEGDNAESGTMKREEVAEK 711

Query: 287 ------IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                     G+  +LP     +   G D  V +    +G++    A++     GK   W
Sbjct: 712 GEGNQPSQNKGSDTNLPTDTAEQLKKGFDRPVIIHRAILGSVERFVAILIEHTAGKLPFW 771

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              ++P +  ++ +        D    +Y  L+    DV  D     +  +   A L  F
Sbjct: 772 ---ISPRQAIVLPV---SDKFNDYANYVYQTLNNHFFDVEIDTSLNTLNKKIREAQLNQF 825

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRF 442
              ++VG K ++ + V +++R      ++ SLEE+I       
Sbjct: 826 NFILVVGEKELTTNTVTVRNRDDQNNHEVCSLEELIARFRKLL 868


>gi|304440717|ref|ZP_07400601.1| proline--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370904|gb|EFM24526.1| proline--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 582

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/242 (44%), Positives = 155/242 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K ++P L+E P DAE+ SHKL+LR  MI + + GIYS+LPLG + +  +  I+REE
Sbjct: 1   MRLTKLYMPTLREVPTDAEVESHKLLLRAAMIRRSTTGIYSYLPLGYRVVRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q A++W ESGR+D +G EM +L DRN +    GPT EE  T + + 
Sbjct: 61  MDRAGSQEILMSAIQPAEIWEESGRWDKFGPEMFKLVDRNGRDFCLGPTAEEYFTTLVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG+ R+REFLMKDAYSFD   EG + SY+  + +
Sbjct: 121 EVSSYKQLPLNIYQIQTKYRDEKRPRFGINRAREFLMKDAYSFDKDEEGLQKSYDMYYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RL L    +  ++G +GG +SHEFI L++TGE  +F S++        +     
Sbjct: 181 YQNVFDRLSLDYKIVEGDNGAMGGHMSHEFIALSETGEGIIFYSENSDKAYTEEKAPVHY 240

Query: 241 DI 242
           D 
Sbjct: 241 DF 242



 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 118/244 (48%), Gaps = 11/244 (4%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPIG  L+ E  V+ D   T++       +  + +   D+                   
Sbjct: 333 TGPIG--LNEEVRVILDKSITKI------NNLVVGANKKDYHIKNVCYERDFTGEVVEDL 384

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              V  +K+  +    K  + RGIEVG+IF  GTKYS  + ATF   +GK  Y  MGSYG
Sbjct: 385 LMAVEGDKIPGTDEVYK--TRRGIEVGNIFQLGTKYSEALDATFLDENGKSQYFVMGSYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R V+AV+E  HD  GI+WP ++AP++I +  +    +   +  EK++A L  +G +
Sbjct: 443 IGVTRSVSAVVEQYHDDHGIVWPMAIAPYQIIITVMNPKKEEQLELGEKLHAALVNMGYE 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD     G +F   DL+G PL++ VG K   DS VE   R      +M+ +E I+  
Sbjct: 503 VLLDDRNVGAGVKFNDRDLIGIPLRITVGKK-AQDSIVEFSRRDNRENIEMTSKEAIDRV 561

Query: 439 SHRF 442
               
Sbjct: 562 VSEM 565


>gi|87302633|ref|ZP_01085450.1| prolyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87282977|gb|EAQ74934.1| prolyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 610

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/244 (44%), Positives = 153/244 (62%), Gaps = 3/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G + + + G+Y++LPL  + L  ++AI+R+E
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRGGYMRRVASGVYAYLPLLWRVLSKISAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A LW  SGR+  Y      M  L DR ++++  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPALQPASLWERSGRWQGYTAGEGIMFHLVDRQERSLGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y +M
Sbjct: 121 AADLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEADLRLTYQRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D           
Sbjct: 181 DQAYRRIFSRCGLRTVAVEADSGAIGGSASQEFMVTADAGEDLILSSADGRYAANQERAC 240

Query: 238 DFDD 241
              +
Sbjct: 241 SLPE 244



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P  +  ++RGIEVGHIF  G KYS  + ATF    G D  + MG YGIG  R+  A +E 
Sbjct: 428 PSQRLEASRGIEVGHIFQLGRKYSQALEATFTNEQGLDEPLWMGCYGIGVSRLAQAAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD +GI WP ++APF++ ++   A D V     E+++  L + G +V  DD  E+ G +
Sbjct: 488 HHDQQGICWPVAIAPFEVIVLVASAQDPVQVALGEQLHDELEQAGLEVLLDDRSERAGVK 547

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F  ADL+G P +V+VG +  + ++VE+  R  G + D++   V+       +  R
Sbjct: 548 FKDADLIGIPWRVVVG-RGAASAQVELVERAGGAKRDVAAGAVVALLQDHIAAAR 601


>gi|304389414|ref|ZP_07371377.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327224|gb|EFL94459.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 669

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 149/457 (32%), Gaps = 51/457 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD     ++L L +    +   G+  + P G      +    R      
Sbjct: 247 EYVTRMAEAAKRDHRRLGNELDLFS-FPEEIGSGLAVFHPKGAMVRMEMENYSRRRHLEE 305

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEE 112
           G   +  P +    L+  SG  + Y   M      +++                 P +  
Sbjct: 306 GYSFVYTPHVTKGQLFETSGHLEWYKDGMFPPMRVDEECDDQGNVTKEGFDYYLKPMNCP 365

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   I++S  +SYR LP   ++    +R E      G+ R R F   D++ +  T E  K
Sbjct: 366 MHNLIYKSRSRSYRELPLRLFEFGTVYRYEKSGVVHGLTRGRGFTQDDSHIY-CTREQMK 424

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
               K+    L +    GL    +   +  P     S E    A     +V  +      
Sbjct: 425 DELTKLLTFVLDLLKDYGLDDFYLELSTKNPHKFVGSDEIWEEATNTLAEVATASGLELV 484

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           P P                       A      + +  D++    ++S   ++    F  
Sbjct: 485 PDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNL 520

Query: 291 GTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG +   V +     G++     V+   + G    W   +AP ++
Sbjct: 521 PERF----DLEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQV 573

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L+ +    +   D CE I  RL      V  D   ++ G +   A     P  +I G +
Sbjct: 574 RLVPVA---EAFNDYCEDIANRLRAENVRVEVDTTDDRFGKKIRNAAKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + V  ++R    +  + +++ I        + R
Sbjct: 631 DAEANAVSFRYRGGEQKNGVPIDQAIAEILEVIRSRR 667


>gi|160902700|ref|YP_001568281.1| prolyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|189083505|sp|A9BGA8|SYP_PETMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160360344|gb|ABX31958.1| prolyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 582

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 165/282 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK + P L+E P D++I S++L++R G I + S G+YS+LPLG K +  +  I+REE
Sbjct: 1   MRFSKLYAPTLKETPSDSDIKSYELLIRGGFIRKISSGVYSYLPLGWKVIRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G+ E+ +P +  A+LW  +GR++ YG E+++L DR+D+    GPTHEE++T + ++
Sbjct: 61  MEKIGSQEIMLPIIHPAELWKMTGRWEDYGPELMKLKDRHDREFTLGPTHEEIVTFLMKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+  P   +QI  KFRDE+RPRFGV+R+REF+MKDAY+F         SY   + +
Sbjct: 121 ELRSYKQFPVNLFQIATKFRDEIRPRFGVLRAREFIMKDAYTFHTDYNSLHESYQHFYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R+GLK + + A++G IGG  SHEF VLA  GE ++F  +         +    +
Sbjct: 181 YENIIKRIGLKYVVVEADTGAIGGSFSHEFHVLAQNGEGEIFYCEKCGYAASDEKARSGE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D     +   +             E++   L  +++   + I
Sbjct: 241 DFSVDENEAFKEMEKVDTQHAKTIEEVAKFLNVSEKKLIKSI 282



 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 4/220 (1%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            I +       I +      +             EK       +     RGIEVG IF  
Sbjct: 358 VIGAMEEKAHYINANAERDFRINLFADIRYVKEGEKCPTQGCNSTLKRTRGIEVGQIFEL 417

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS  M+A F   +G+     MG YG G  R + A++E  +D  GIIWP SVAPF+++
Sbjct: 418 GDKYSSKMNAVFTDENGEQKPYIMGCYGWGVSRTLGAIVEQLNDENGIIWPKSVAPFEVA 477

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +I +  +D+      ++IY    K G DV  DD     G +F   DL+G P+++I+G + 
Sbjct: 478 IIPVAMNDEAIVSTSQEIYDYFLKEGIDVIIDDREVSAGFKFKDIDLIGVPIKIIIGKR- 536

Query: 411 VSDSKVEIKHRLTGI---REDMSLEEVINYASHRFSNNRP 447
           + + K+E+K R        E  +++E+ +    +  N  P
Sbjct: 537 LKEGKIELKQRDKEEGTLIEFKNVKELYDKVKEKLENYDP 576


>gi|262341223|ref|YP_003284078.1| threonine--tRNA ligase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272560|gb|ACY40468.1| threonine--tRNA ligase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 424

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 161/451 (35%), Gaps = 66/451 (14%)

Query: 11  LQENPR--DAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E+P   D      KL      I   +   G+  WLP G    +N+   + + Q ++G 
Sbjct: 9   LKEDPNTIDHRKIGKKL---KFFIFSDKVGSGLPLWLPRGTILRNNLEEFLTDIQKKSGY 65

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             +  P +    L+++SG +  YGK+  +     R ++  +  P +     +++RS   S
Sbjct: 66  EMVVTPHIGHKKLYIQSGHWRKYGKDNFKPIQTPREEEEFLLKPMNCPHHCEVYRSQEWS 125

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +    +R E      G+ R R F   DA+ F  T +     + K+      
Sbjct: 126 YRDLPKRFAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIF-CTYDQVLEEFKKVINLVFY 184

Query: 184 IFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLA---DTGETQVFCSKDFMDFPIP 233
           +F  LG     +R            IG + + E    A      E ++  S ++ +    
Sbjct: 185 VFRCLGFSEYTVRISLRDTSKIDNYIGSEKNWEKAEKAILNAVKEEKIKASINYGEAAFY 244

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
               DF                                   K    R  ++G I      
Sbjct: 245 GPKLDFL---------------------------------IKDSLGRSWQLGTI---QVD 268

Query: 294 YSLP--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           Y+LP      +KG + +    V +     G++  + A++     G   +W   +AP +  
Sbjct: 269 YNLPERFDLYYKGKNNEKCRPVMIHRAPFGSLERMIAIVIEHTKGNLPLW---LAPNQGV 325

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ I     V     +KI   +      VF D   E+I  +   ++    P  +I+G K 
Sbjct: 326 ILPISDKYIV---YAKKILNLMLNYNIRVFVDSRNEKINKKIRDSEEKKIPYMIILGEKE 382

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +  + ++    G     S+ + I    + 
Sbjct: 383 EKNEMISLRRHGLGHIGTFSISKGIETIFNE 413


>gi|332637693|ref|ZP_08416556.1| prolyl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 573

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/240 (48%), Positives = 156/240 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SH++MLR G +   S G+Y++LPL Q+ L+ +NAIIREE
Sbjct: 1   MKQSKVFIPTLRETPADAEVISHQMMLRAGYMRPVSAGVYAYLPLAQRVLNKINAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEMS P L  A++W ESGRY++YG  + +L +R+D+ MI GPTHEE MT + R 
Sbjct: 61  MEKIDAIEMSAPMLLPAEMWQESGRYETYGPNLFKLKNRHDRDMILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFGV+R REF+MKDAYSF +  +G   SY  M  +
Sbjct: 121 DIKSYKRLPLTVYQIQTKFRDENRPRFGVLRGREFIMKDAYSFSVDQDGLDESYKNMESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF R+GL    +  ++G +GG  S EF   A+ GE  +  S +           D  
Sbjct: 181 YINIFDRIGLDYRVIVGDAGAMGGSDSKEFSAPAEAGEDIIAYSDESDYAANLEMAKDLY 240



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 3/230 (1%)

Query: 216 TGET-QVFCSKDFMDFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLFDSLPE 273
            GE  ++   +   D    +   +      LN ++   +     A      E       +
Sbjct: 338 VGEDVKIIADEWVTDMVNVTVGGNESGFHYLNANVDRDFRIDEVADVRTAREGDLAIDGK 397

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 +GIE+GHIF  GT+YS  M A    A+G+   V MGSYGIG  R++AA+ E + 
Sbjct: 398 GHLKFTKGIEIGHIFKLGTRYSKSMGAQVLDANGRQADVIMGSYGIGVSRLLAAIAEQNA 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G+ WP SVAP+ + L+ +K  D+  R   +++  +L + G +V  DD  E+ G +F 
Sbjct: 458 DENGLAWPTSVAPWDVHLVPMKYSDETQRALTDELNDKLVEAGYEVLVDDRNERAGVKFN 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +DL+G P++V +G K   +  VE+K R      ++  EE+++       
Sbjct: 518 DSDLIGLPVRVTIGKK-AGEGIVEVKLRKADEAIEVRTEELVSTLQILLQ 566


>gi|255322659|ref|ZP_05363803.1| prolyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255300220|gb|EET79493.1| prolyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 570

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/231 (45%), Positives = 148/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  +E P+DA +ASHK +LR G   Q   G+Y++LPLG++ L+N+  I++EE
Sbjct: 1   MKFSKLYAPTAKEAPKDASLASHKFLLRAGYAEQVGSGLYNFLPLGKRVLENIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S+  + SADLW ESGR+D YGKE+LR  DR +   +  PT+EE +  + R 
Sbjct: 61  LDEAGAQEISMSFVTSADLWRESGRFDVYGKELLRFKDRKENDFVLSPTNEESVVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E     ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFLMKDGYSFHANAEDLDREFDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF RLGL    +RA+SG IGG  S EF+VLA++GE  +   ++     
Sbjct: 181 YSKIFTRLGLNFRAVRADSGAIGGSGSKEFMVLANSGEDDIIVCENCDYAA 231



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 113/244 (46%), Gaps = 17/244 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+G      +I     GE+Q+ C  +  D+     +    +      +           
Sbjct: 342 GPVGLRGVEFYIDKELRGESQMICGANERDYHFVGVSVSSFNAERFKDL----------- 390

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                 K  D  P      +  +GIEVGHIF  GTKYS PM ATF   +GK     MG Y
Sbjct: 391 ---TAVKAGDKCPCCGGNLSVSKGIEVGHIFKLGTKYSEPMGATFLDENGKAKPFIMGCY 447

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+VA  +E+SHD KGIIW +++APFK  +I     D+      + +Y  L   G 
Sbjct: 448 GIGVSRLVAVAVEASHDEKGIIWNETLAPFKFEIIVSNLKDEEGVKFAQGLYEDLRGAGV 507

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G + +  +L+GFP  VIVG K +++  VE+  R    +E +   E++  
Sbjct: 508 SVLLDDRNERFGVKMSEFELMGFPYAVIVG-KGLAEGTVELVTRDGLAKETVKASEILAR 566

Query: 438 ASHR 441
               
Sbjct: 567 LKSL 570


>gi|216264494|ref|ZP_03436486.1| threonyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215980967|gb|EEC21774.1| threonyl-tRNA synthetase [Borrelia burgdorferi 156a]
          Length = 581

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 164/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  ++     + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSNLKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEET 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P ++ +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ 
Sbjct: 494 --IVEDYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       M L+E + +   +  + 
Sbjct: 552 IRTRTNEQINGMKLDEALKFILFKIRDK 579


>gi|322434762|ref|YP_004216974.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321162489|gb|ADW68194.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 612

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/223 (48%), Positives = 147/223 (65%), Gaps = 1/223 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHKL+LR G + Q   GIYS+L LGQ++++ + AIIR+E 
Sbjct: 3   RWSKLFIPTLREAPSDAEVASHKLLLRAGYVRQLGAGIYSYLFLGQRSVNKIVAIIRQEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +PT+   ++W ESGR+   G  M RL DR    +  G THEEVMT I RS 
Sbjct: 63  DTIG-QEFLLPTIHPREVWEESGRWTGMGDNMFRLKDRKGAELCLGMTHEEVMTTIARSE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RP+ G++R R+F+MKD+YSFD+   G   SYN    +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPKSGLLRVRQFIMKDSYSFDIDEAGLDLSYNLHDAAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF R GL+ + + A+SG +GG  S EF+V  D GE  +  S
Sbjct: 182 RRIFDRCGLEYVAVEADSGAMGGSQSQEFMVYTDAGEDLIASS 224



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 91/181 (50%), Gaps = 4/181 (2%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E   D +        + +E+GHIF  G KYS  M AT    DGK+    MGSYGIG  R+
Sbjct: 431 EGELDPIGNLPLRLGKAVEIGHIFKLGYKYSKSMGATVLNRDGKEVTPIMGSYGIGVERI 490

Query: 325 VAAVIESSHDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           + A IE+S    G      P S+APF++ +      +    +A EKI A L+  G DV  
Sbjct: 491 LTAAIETSAAKNGGEAYALPASIAPFQVIVTVTNIKEPALVEAGEKIAADLAAAGLDVLL 550

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+ G +F  ADL G P ++ VG K +S+ +VE+  RL     D+ +E  +    + 
Sbjct: 551 DDRDERAGVKFKDADLTGVPYRIAVGKK-LSEGQVELLDRLQNQTLDIPVEAAVQTLRNL 609

Query: 442 F 442
            
Sbjct: 610 L 610


>gi|225551832|ref|ZP_03772775.1| threonyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371627|gb|EEH01054.1| threonyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 581

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 164/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHVGKSWLWQTSGHLDFYKDSMFAKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  ++     + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSNLKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEET 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P ++ +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ 
Sbjct: 494 --IVEDYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L+E + +   +  + 
Sbjct: 552 IRTRTNEQINGIKLDEALKFILFKIRDK 579


>gi|323441042|gb|EGA98749.1| prolyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323443911|gb|EGB01522.1| prolyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 567

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/231 (47%), Positives = 162/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEESLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|329120957|ref|ZP_08249588.1| proline--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327471119|gb|EGF16573.1| proline--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 574

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/224 (45%), Positives = 145/224 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +A + SHK ML+ GMI + S G YS+LPL  +++  +  II EE
Sbjct: 1   MKASKLYAPTLREIPSEAVVISHKYMLKAGMIRKISSGFYSYLPLAWRSIKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +   Q A++W ++GR+D YG+EM RL DR+++     PTHEE++T +   
Sbjct: 61  MAKIESQEILMSIAQPAEIWQQTGRWDVYGEEMFRLKDRHERDYCLAPTHEELVTTLVHI 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 121 DTFSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDVDEEGLDKQYHDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF + GL    + A+SG IGG  SHEF VLA+ GE  +   
Sbjct: 181 YTNIFTKCGLNFRTVIADSGAIGGSSSHEFEVLAEAGEADIVYE 224



 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 15/248 (6%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           PIG   + +F ++ D    +        D    +   D   I                  
Sbjct: 333 PIGLKKNKDFDIIVDKTVME------MKDACCGANIKDKHYIHVNPKRDFDSVRIETIRL 386

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              N+         +    +GIEVG +F  GTKYS  ++ T+   +GK   + MG YGIG
Sbjct: 387 IDKNDVS--PWTGKEIEFKKGIEVGQVFKLGTKYSESLNCTYLDKNGKSKPMVMGCYGIG 444

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA IE +HD  GIIW  S+AP+++ +I     +       E++Y  +SK   ++ 
Sbjct: 445 VTRTMAASIEQNHDKDGIIWAVSIAPYEVVIIPANNKNSEIMKVAEELYRNMSKENNEIV 504

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-------SLEE 433
           +DD  E+ G +F  ADL+G+P++V +G K+  + KVEIK R TG   ++        +E 
Sbjct: 505 FDDRNERAGIKFKDADLIGYPIRVTIGKKWEENGKVEIKIRRTGEVIEIDYKDCKAKVES 564

Query: 434 VINYASHR 441
           +++    +
Sbjct: 565 ILDDLRSK 572


>gi|323356826|ref|YP_004223222.1| prolyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323273197|dbj|BAJ73342.1| prolyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 600

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/235 (41%), Positives = 139/235 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +FL  L+E+P DAE+ASH+L++R G I +++ GI++WLPLG K    +  ++REE 
Sbjct: 6   RLSNFFLRTLREDPSDAEVASHRLLVRAGYIRRNAPGIFAWLPLGLKVKAKIETVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR++ YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 66  ANAGAFEVHFPALLPREPYEVTGRWEEYGDALFRLQDRKGADYLLAPTHEEMFTLLVKDL 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 126 YSSYKDLPLTIYQIQDKYRDEARPRAGLLRGREFTMKDAYSFDATDAGLNASYQAQRDAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            RIF RLGL+ + + A++G +GG  S EF+     GE     S       + +  
Sbjct: 186 ERIFTRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGEDTFVRSAGGYAANVEAFT 240



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 3/161 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GH+F  G KY+  +       +GK   V MGSYGIG  R++A + E ++D KG+I
Sbjct: 441 RGMEIGHVFQLGRKYAEALGLKVLDENGKLATVTMGSYGIGVTRILAIIAELNNDEKGLI 500

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP SVAPF + ++     D    +  E++ A L   G DV +DD  +   G +F  A+L+
Sbjct: 501 WPASVAPFDVHVVA-TGRDAAAFELAEQVSADLEAAGLDVLYDDRPKVSPGVKFGDAELV 559

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G P  +IVG +  ++ +VE+  R TG RE + + + +   +
Sbjct: 560 GIPRILIVG-RGAAEGQVELWDRRTGERETLPVADALAALA 599


>gi|86608604|ref|YP_477366.1| prolyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|114152268|sp|Q2JMD8|SYP_SYNJB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86557146|gb|ABD02103.1| prolyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 609

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/227 (47%), Positives = 144/227 (63%), Gaps = 5/227 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P +AE+ SHKL+LR   I + S GIY++LPL  + L  ++ I+R+E 
Sbjct: 6   RLSQMLFVTLREDPVEAELPSHKLLLRGCFIRRLSPGIYTYLPLLWRVLQKISEIVRQEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIF 118
           N  G  E  +P LQ A++W ESGR+D Y +    M  L DR  +    GPTHEEV+T + 
Sbjct: 66  NAIGGQECLLPQLQPAEIWRESGRWDVYTQAEGIMFALKDRQGREQSLGPTHEEVITLLA 125

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  I+SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M+
Sbjct: 126 RDLIRSYRQLPQTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEESLRQTYQDMY 185

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGG--DLSHEFIVLADTGETQVFC 223
            +Y RI  R GL+   + A++G IGG    S EF+VLA  GE ++  
Sbjct: 186 RAYSRILRRCGLEFRVVDADAGAIGGPSAASQEFMVLASAGEDEILY 232



 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 1/173 (0%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+    +ARGIE+GHIF  G K+SLPM ATF    G +  + MG YGIG  R+  A +E
Sbjct: 431 NPDQILETARGIEIGHIFQLGLKFSLPMRATFTDEQGSEQPLWMGCYGIGVSRLAQAAVE 490

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            SHD  GIIWP ++AP+ + ++     D       EK+   L+  G +  WDD  E+ G 
Sbjct: 491 QSHDANGIIWPVAIAPYHVVVVVPNISDPEQMSVAEKLVQDLATAGIETLWDDRDERAGV 550

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F  ADL+G P ++  G + +   KVE+  R +G   ++ +EEV+     R  
Sbjct: 551 KFKDADLIGIPYRITTG-RSLKQGKVELTERASGQATEIPIEEVVTTLKERIE 602


>gi|241678425|ref|XP_002412596.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215506398|gb|EEC15892.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 692

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 158/446 (35%), Gaps = 47/446 (10%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R       H+ S G   + P G    + +  +I+ E N+ 
Sbjct: 279 LKEWQKFQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPNGAYIYNTLVDMIKAEYNKR 338

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW+ SG +  Y   M    D   +     P +      +F    +S
Sbjct: 339 GFQEVVTPNMYNSKLWLTSGHWQHYQDNMFSF-DVEKETFALKPMNCPGHCLMFDVRPRS 397

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F  + E               
Sbjct: 398 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAS-EQIASEMKGALEFLKH 456

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+   G     ++  + P G     E    A+    Q      +     P +        
Sbjct: 457 IYSIFGFTF-KLKLSTRPEGFLGDIEVWNDAEKQLEQSLNDFGYPWTLNPGDG------- 508

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L    + +   ++    F    +++L    ++ 
Sbjct: 509 -------------AFYGPKIDITIMDALRRQHQCATIQLD----FQLPIRFNL----SYI 547

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G K   V +    +G++  + A++  ++ GK   WP  ++P +++++ +     +  
Sbjct: 548 SETGEKKRPVIIHRAILGSVERMIAILTENYGGK---WPFWLSPRQVTMVPVGP---MYD 601

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D   ++  +L   G     D D G  +  +   A L  +   +  G    +   V ++ R
Sbjct: 602 DYALEVKRQLCAAGFRCDADLDPGNTMNKKIRNAQLDQYNFILG-GLPAKTSGTVNVRTR 660

Query: 422 LTGIREDMSLEEVINYASHRFSNNRP 447
              +  + S+ +VI   S       P
Sbjct: 661 DNKVHGEFSVADVIERFSRLKREFVP 686


>gi|87123890|ref|ZP_01079740.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Synechococcus sp. RS9917]
 gi|86168459|gb|EAQ69716.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Synechococcus sp. RS9917]
          Length = 594

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/228 (49%), Positives = 147/228 (64%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I +   GIY++LPL  + L  +NAI+REE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGFIRRVGSGIYAYLPLMWRVLQRINAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNALGALETLLPQLQPAELWERSGRWQGYTAGEGIMFHLDDRQGRQLGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       +  Y  M
Sbjct: 121 AGELLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHADASDLQACYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +Y RIF R GL+++ + A+SG IGG  S EF+V A+ GE  +  S+
Sbjct: 181 DGAYRRIFDRCGLQTVAVEADSGAIGGAASQEFMVTAEAGEDLILMSE 228



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 123/304 (40%), Gaps = 10/304 (3%)

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP    +R  + L  +    +            +         R GL   P     G +G
Sbjct: 295 RPVLACLRGDQEL-NEVKLINALTAALGEGVLDLAAVTAEELERQGLNPWPF----GALG 349

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFP----IPSENTDFDDIISLNSIVEQWTAPYAAT 259
            DL    +  A T         D         +   N+             Q        
Sbjct: 350 PDLEDSRLAGARTWVPTFLRFADPTALALERFVCGANSPDQHRWGWRWPDCQVLPQAVDL 409

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +        S PE   ++ RGIEVGHIF  G KYS  M A+F  ADG    + MG YGI
Sbjct: 410 RNAQAGDRCQSDPEQTLMARRGIEVGHIFQLGRKYSQAMDASFTNADGGQEALWMGCYGI 469

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+  A +E  HD  GI WP ++APF++ ++     +   R   E +YARL   G D 
Sbjct: 470 GVSRLAQAAVEQHHDDAGICWPLAIAPFQVIVVVANLQEATQRSLGEDLYARLMAQGVDA 529

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+G P +++VG +  +D +VE+  R T   + ++++  +    
Sbjct: 530 LLDDRQERAGVKFKDADLIGIPWRIVVG-RAAADGQVELVERATRQADVLTVDAALERVL 588

Query: 440 HRFS 443
              +
Sbjct: 589 AAVA 592


>gi|315655426|ref|ZP_07908326.1| threonine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490366|gb|EFU79991.1| threonine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 669

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 149/457 (32%), Gaps = 51/457 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD     ++L L +    +   G+  + P G      +    R      
Sbjct: 247 EYVTRMEEAAKRDHRRLGNELDLFS-FPEEIGSGLAVFHPKGAMVRMEMENYSRRRHLEE 305

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEE 112
           G   +  P +    L+  SG  + Y   M      +++                 P +  
Sbjct: 306 GYSFVYTPHVTKGQLFETSGHLEWYKDGMFPPMRVDEECDDQGNVTKEGFDYYLKPMNCP 365

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   I++S  +SYR LP   ++    +R E      G+ R R F   D++ +  T E  K
Sbjct: 366 MHNLIYKSRSRSYRELPLRLFEFGTVYRYEKSGVVHGLTRGRGFTQDDSHIY-CTREQMK 424

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
               K+    L +    GL    +   +  P     S E    A     +V  +      
Sbjct: 425 DELTKLLTFVLDLLKDYGLDDFYLELSTKNPHKFVGSDEIWEEATNTLAEVATASGLELV 484

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           P P                       A      + +  D++    ++S   ++    F  
Sbjct: 485 PDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNL 520

Query: 291 GTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG +   V +     G++     V+   + G    W   +AP ++
Sbjct: 521 PERF----DLEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQV 573

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L+ +    +   D C+ I  RL      V  D   ++ G +   A     P  +I G +
Sbjct: 574 RLVPVA---ETFNDYCDDIANRLRAENVRVEVDTTDDRFGKKIRNAAKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + V  ++R    +  + +++ I        + R
Sbjct: 631 DAEANAVSFRYRGGEQKNGVPIDQAIAEILEAIRSRR 667


>gi|160935092|ref|ZP_02082478.1| hypothetical protein CLOLEP_03968 [Clostridium leptum DSM 753]
 gi|156866545|gb|EDO59917.1| hypothetical protein CLOLEP_03968 [Clostridium leptum DSM 753]
          Length = 660

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 160/441 (36%), Gaps = 38/441 (8%)

Query: 13  ENPRDAEIASH-KLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +A+   H KL    G         +G+   LP G + +  +   + +E+ + G + 
Sbjct: 248 EAMEEAKKRDHNKLGRELGYFTTCDIIGQGLPILLPNGARVIQLLQRFVEDEEQKRGWLL 307

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
              P +  +DL+  SG +D Y   M  L D   +D+     P         + +  +SYR
Sbjct: 308 TKTPYMAKSDLYKLSGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPFQYQAYLNKKRSYR 367

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  + +    FR+E      G++R R+F + + +     P+  +  +         + 
Sbjct: 368 DLPLRYNETSTLFRNEASGEMHGLIRVRQFTISEGHLM-CRPDQLEEEFKSCLQLANYML 426

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             LGL              D+S+ F       + +   + +  D    +     D +   
Sbjct: 427 ETLGLAE------------DVSYRFSQWDPEDKDKYIGTPEQWDEAQSAMKRILDHLGIE 474

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +I     A Y    D+  + +F      K  +   I++  +       +      +  A
Sbjct: 475 YAIGVGEAAFYGPKLDIQIKNVFG-----KEDTLITIQIDQLL------AEKFGMEYVDA 523

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK      +    IG      A++   + G     P  + P ++ ++ I    +   D 
Sbjct: 524 DGKAKNPYIIHRTSIGCYERTLALLIEKYAGA---LPMWLMPEQVRVLPI---SEKFLDK 577

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L   G     D   E+IG +   A +   P  +I+G K V ++ V ++ R  G
Sbjct: 578 ALEVDRELKAQGIRSTADSRNEKIGYKIREAQMEKIPYMLIIGEKEVQENVVSVRSRKDG 637

Query: 425 IREDMSLEEVINYASHRFSNN 445
           +   MSLE  +  A       
Sbjct: 638 VLGSMSLETFLEKALTEIREK 658


>gi|170288224|ref|YP_001738462.1| prolyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|226701351|sp|B1L8Y1|SYP_THESQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170175727|gb|ACB08779.1| prolyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 577

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 154/227 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKTAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELRSYRQLPLVVYQVANKYRDEIRPRFGLLRAREFIMKDAYSFHSSWESLDETYELFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  RLG+K + + AE+G IGG+ SHEF+V A  GET V   +  
Sbjct: 181 YSRIMERLGVKYMVIEAETGAIGGNASHEFVVPAKIGETNVLFCEKC 227



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSL 296
            ++     +             D+      D  P       + +GIE+GHIF  GTKYS 
Sbjct: 359 MEEDTHYVNANHPRDFKVDEWYDLRTMVEGDPCPVCGEPLKATKGIELGHIFKLGTKYSE 418

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M A F   +G+     MG YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  
Sbjct: 419 AMKAYFMDENGEMKPFIMGCYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDILNM 478

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D   +   EKIY  LS+ G +V  DD     G +F  ADL+GFP+++ VG + + +  V
Sbjct: 479 NDAEQKQVGEKIYQVLSEKGEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVV 537

Query: 417 EIKHRLTGIREDMSL 431
           E+K R +     +++
Sbjct: 538 ELKKRYSKELVKVNI 552


>gi|162452628|ref|YP_001614995.1| hypothetical protein sce4352 [Sorangium cellulosum 'So ce 56']
 gi|161163210|emb|CAN94515.1| thrS [Sorangium cellulosum 'So ce 56']
          Length = 753

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 143/428 (33%), Gaps = 40/428 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +DA++  H        + +   G+  WLP G      +    R+     G   +  P + 
Sbjct: 357 KDADVEVH---FEPHFVEEIGAGLVMWLPKGGLLRTIIEDQWRKMHLEEGYDIVYSPHIA 413

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            ADLW  SG +D Y + M      +       P +      + +S  +SYR  P    ++
Sbjct: 414 KADLWKTSGHWDFYREGMFSPMSVDGHDYCCKPMNCPFHILMVKSRTRSYREFPMRLAEL 473

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E      G+MR R F   DA+ F    +  +   +++    L++    G +   
Sbjct: 474 GTVYRYEAAGVMHGLMRVRGFTQDDAHLF-CRADQVEQEIHRVLRFILKMLRTFGFEQFD 532

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P       E    A++       +        P     +   I +  +      
Sbjct: 533 INLSTRPEKYVGGLEDWAKAESTLAGALKALGLEYTVDPGGGAFYGPKIDIKLV------ 586

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQ 313
                         D+L    + S    +  +            +  F  A G+ +  + 
Sbjct: 587 --------------DALDRRWQCSTLQYDFNNPER--------FTLGFVNAKGELEQPIM 624

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++     V+   H G    W   ++P +  ++ +        D  E++   L 
Sbjct: 625 LHRALLGSIERFIGVLLEHHAGALPAW---LSPEQARVVTV---SDKHNDHAEQVTQALR 678

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G    +    E++G++   A +   P  +++G K V      ++ R    R  M  E 
Sbjct: 679 AHGIRASFVRSSEKLGAKIREAQVEKIPHMLVIGDKEVEAKGATVRLRDGSDRGFMKTEA 738

Query: 434 VINYASHR 441
           +  +   +
Sbjct: 739 LAEFLREQ 746


>gi|317131189|ref|YP_004090503.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469168|gb|ADU25772.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 645

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 159/447 (35%), Gaps = 43/447 (9%)

Query: 8   LPILQENPRDAEIASH-KLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L+E    A    H KL    G         +G+   LP G + L  +   + +E+ +
Sbjct: 233 ITMLEE----ARKRDHNKLGRELGFFTTVDYIGQGLPVMLPKGSRVLQLLQRFVEDEEEK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSH 121
            G +    P L  +DL+  SG +D Y   M  L D   +D+     P        ++ + 
Sbjct: 289 RGYLLTKTPLLAKSDLYKISGHWDHYRDGMFVLGDEEKDDEVFALRPMTCPFQFQVYLNK 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +    FR+E      G++R R+F + + +     P+  +  +      
Sbjct: 349 KRSYRDLPMRLGETSTLFRNEASGEMHGLIRVRQFTISEGHI-ACRPDQLEEEFKGCVDL 407

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +   +GL              D+S+ F    +    +   + +  +          D
Sbjct: 408 ANFMLKTVGLDE------------DVSYRFSKWDENDRDKYIGTSEQWEEVQDRMRNILD 455

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+    +      A Y    D+    +F      K  +   +++   F    ++      
Sbjct: 456 DLGIQYTEASGEAAFYGPKLDIQIRNVFG-----KEDTLITVQI--DFQLAKRF----EM 504

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG++     +    IG      A++   + G    W   +AP ++ ++ I    +
Sbjct: 505 KYTDTDGQEKYPYVIHRTSIGCYERTLALLIEKYAGAMPTW---LAPEQVRVLPI---SE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + +  +L   G     D   E+IG +   A L   P  ++ G +   +  V ++
Sbjct: 559 KHEAYAQPVLEKLRAAGLRATVDQRNEKIGYRIREAQLEKVPYMLVAGDREAEEGTVSVR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R+ G     +++  +       +  R
Sbjct: 619 ARV-GEGGTQTVDAFLKDILQEIAEKR 644


>gi|217967413|ref|YP_002352919.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336512|gb|ACK42305.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 638

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 146/436 (33%), Gaps = 43/436 (9%)

Query: 17  DAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +A+   H+ + R   I     +   G+  + P G      +    R+E  + G   +  P
Sbjct: 233 EAQRRDHRKLGRELEIFNTFEEAGPGLIFYPPKGAMLRLIIEEFERKEHLKRGYFPVITP 292

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L  A+LW  SG +D+Y + M  L    DK     P +      I+ S ++SYR+LP  F
Sbjct: 293 HLMQAELWKRSGHWDNYRENMFFLQVE-DKDYAVKPMNCPGHILIYNSKVRSYRDLPLRF 351

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           +++   +R E      G+ R+R F   DA+ F  T E  +     +      +    GLK
Sbjct: 352 FEMGTVYRYERSGVLYGLERARGFTQDDAHIF-CTQEQLEDEIKGVLDFVFYMLDSFGLK 410

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E    A         S          E                
Sbjct: 411 EYVVTLSTKPEKYIGSDEIWEKATQALKNALESTGIEYRIAEGEG--------------- 455

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                A      +  L   L +  +     ++    F    ++      T+   DG K  
Sbjct: 456 -----AFYGPKIDVGLKGLLGKMWQGPTIQVD----FNLPERF----DLTYDAPDGTKRR 502

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G+      ++   + G+  +W   +AP ++ ++ I    +   +  E +  
Sbjct: 503 PVMIHRAILGSYERFIGILVEHYGGRFPLW---LAPEQVRILPI---SERHNEYAEYVLR 556

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L         D    ++  +   A     P   IVG K   ++KV ++           
Sbjct: 557 NLRNNDIRAEIDKDQAKLNYKLRKAIAEKVPYIFIVGDKEKEENKVSVRVH-NKDLGMFD 615

Query: 431 LEEVINYASHRFSNNR 446
           L  V+        + +
Sbjct: 616 LAYVVTKLLEEIRSKK 631


>gi|195941538|ref|ZP_03086920.1| threonyl-tRNA synthetase (thrZ) [Borrelia burgdorferi 80a]
 gi|312149456|gb|ADQ29527.1| threonyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 581

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 164/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  ++     + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSNLKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEET 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P ++ +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ 
Sbjct: 494 --IVEDYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L+E + +   +  + 
Sbjct: 552 IRTRTNEQINGIKLDEALKFILFKIRDK 579


>gi|289642063|ref|ZP_06474216.1| threonyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289508136|gb|EFD29082.1| threonyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 610

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 152/442 (34%), Gaps = 34/442 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD  +    L L         KG+  WLP G    D +    RE +   G
Sbjct: 191 YLWQLEEAKKRDHRVIGEALDLFA-FSPAVGKGLPLWLPNGTIVRDELETWAREVERAHG 249

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +DL+  SG    Y  ++    D + +     P +      ++++  +SY
Sbjct: 250 YQRIVTPHITKSDLYYISGHLPYYADDLYSPIDIDGEEYYLKPMNCPHHHMVYKARPRSY 309

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +    +R E   + FG+MR R F   DA+ +  T E +   +  +   +   
Sbjct: 310 RELPLRLAEYGTVYRYERSGQLFGMMRVRGFSQNDAHIY-CTREQAIDEFLAVMRLHALY 368

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +LG++   M                 L D   T+ +   + M         D  +   
Sbjct: 369 YDKLGIEDYHMVL--------------ALRDPKNTEKYHGDELMWQEAERITRDAMEQSG 414

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  I +   A  A      +  L          S   +++     FG         TF  
Sbjct: 415 IPYIEDIGGA--AHYGPKVDFVLTSVTGREFAASTNQVDLYMPEQFG--------LTFTN 464

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+ +  V +    +G+     A +     G   +W   +AP ++ ++ I        D
Sbjct: 465 RHGEAEQAVVLHRAPLGSHERFVAFLIEHFAGAFPVW---LAPVQVRVVPI---SDRQAD 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               ++ RL   G     DD    + ++   A+    P   ++G + + +  V ++ R  
Sbjct: 519 GAAAVWRRLVDAGIRAELDDSDNTMQAKIRRAEQQKVPYVAVIGDRELENDSVSVRARGR 578

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                  + E+I       ++ 
Sbjct: 579 RNLGSRPVPELIEKLGRLIADR 600


>gi|257459695|ref|ZP_05624804.1| prolyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257443120|gb|EEV18254.1| prolyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 572

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 139/231 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F P L+E PRDA + SH L++R G I Q   G+Y++LPLG+  L+ + A+IR+E
Sbjct: 1   MKFSKLFAPSLKEAPRDAVLPSHALLIRAGFIEQLGSGLYNFLPLGKIVLERICAVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S   + SAD W +SGRY  YGKE+LR  DR D   +  PT+EE    +   
Sbjct: 61  MDAAGAQEVSFSVVTSADAWKKSGRYAKYGKELLRFKDRKDNDFVLSPTNEEAAVLMVAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF MKDAYSF       K  +  M  +
Sbjct: 121 KITSYKQLPLNIYQINTKFRDEARPRFGLLRGREFTMKDAYSFHADAADMKREFEVMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A+SG IGG  S EF+VLAD GE  +   K      
Sbjct: 181 YSRIFTRLGLNFRTVDADSGAIGGSGSKEFMVLADNGEDDIVVCKRCEYAA 231



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 18/249 (7%)

Query: 200 GPIGGDLSHEFIVLAD-TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           GP G     +F + A+  G  ++    +  D+     +                    + 
Sbjct: 338 GPFGLGEGAKFYIDAELKGAREMIAGANEPDYHYVGASV--------------INFNESR 383

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+    + D+ P    +    +GIEVGHIF  GT+YS PM A F  A+GK     MG 
Sbjct: 384 FADLAAVGVGDACPCCGGELSITKGIEVGHIFQLGTRYSEPMGARFLDANGKARAFYMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIGA R++A  IESSHD +G +WP  +APF++ +I     D    +  EK+Y +  + G
Sbjct: 444 YGIGASRLIAVAIESSHDERGCVWPRELAPFELEIIISNHKDAAAVEFAEKLYEQCRERG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  DD  E+ G +    +L+GFP  V+VG K +++  VE   R    R+ +S +E+++
Sbjct: 504 IRVLLDDRAERFGVKMNDFELMGFPYAVLVG-KALAERSVEFITRAGLKRQSVSADEILS 562

Query: 437 YASHRFSNN 445
           +   +    
Sbjct: 563 FIERKLIEK 571


>gi|302335688|ref|YP_003800895.1| prolyl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301319528|gb|ADK68015.1| prolyl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 571

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/226 (49%), Positives = 155/226 (68%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+ + P L+E+P DAE+ASH+L+LR GMI + + G+YS+LPL  +++  + AIIR+E 
Sbjct: 6   KMSRLYAPTLKEDPTDAELASHRLLLRAGMIRKGAAGLYSYLPLAWRSIRKIEAIIRDEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA EM VP L  ADLW +SGR++ YG E++R+ DR+  +   GPTHEE  TD+  + 
Sbjct: 66  ETIGAQEMQVPILTDADLWHQSGRWEVYGPELMRIDDRHGHSYALGPTHEESFTDLVHNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP T YQ+Q KFRDE RPRFG+MR REF+MKDAYSF  T E  +  Y +   +Y
Sbjct: 126 LKSYKQLPVTLYQVQDKFRDERRPRFGLMRGREFIMKDAYSFSATQESLRQCYEEEKAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            RI  R GL+++P+ A+SG IGGD S EF+ LAD GE ++      
Sbjct: 186 ARIAERCGLRALPVVADSGQIGGDSSVEFMALADAGEAELVYCDGC 231



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 131/290 (45%), Gaps = 21/290 (7%)

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D    D   E +  +Y+ M    +      GL    +R   GPIG  L     V AD   
Sbjct: 300 DHEMNDCKAEHAFGAYHLMSDEEI---AHFGL----VRGFMGPIG--LPEGIRVCADISL 350

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--R 276
            +         + + +   D+  + +             +  DV   +  D  P      
Sbjct: 351 RE------SPWWIVGANEADYHFVRAK----LGRDFEIGSWVDVIGAREGDVCPSCGAAL 400

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
             ARGIE+  +F  GTKYS  M ATF   DG++    MG YGIG  R +AAV+E  HD  
Sbjct: 401 KGARGIEISQVFQLGTKYSEAMGATFTDEDGREKPFLMGCYGIGVSRTLAAVVEQHHDEH 460

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GI WP SVAP+++ +I +   D +     E++   L   G +V  DD  E+ G +F  AD
Sbjct: 461 GISWPVSVAPYEVEVIPLDVRDDLVWPVAERLATGLVDAGVEVVVDDRKERPGVKFNDAD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           L+GFP QV+ G K + D  VE+K R TG R ++ + E +   + R    R
Sbjct: 521 LMGFPFQVVCGKKAIRDGNVELKLRATGERLELPIAEAVRAVAERVLAQR 570


>gi|39644807|gb|AAH07824.2| TARS2 protein [Homo sapiens]
          Length = 709

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 159/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L + +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 277 LLRVWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 336

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 337 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 396

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 397 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 456

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 457 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 511

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 512 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 551

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 552 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 603

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q 
Sbjct: 604 PFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQF 660

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 661 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 701


>gi|20070344|ref|NP_079426.2| threonyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]
 gi|74752395|sp|Q9BW92|SYTM_HUMAN RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|12802990|gb|AAH00541.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|14603040|gb|AAH09997.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|55958996|emb|CAI15488.1| threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119573933|gb|EAW53548.1| threonyl-tRNA synthetase-like 1, isoform CRA_a [Homo sapiens]
 gi|168275836|dbj|BAG10638.1| threonyl-tRNA synthetase [synthetic construct]
          Length = 718

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 159/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L + +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 286 LLRVWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 345

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 346 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 405

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 406 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 465

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 466 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 520

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 521 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 560

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 561 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 612

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q 
Sbjct: 613 PFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQF 669

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 670 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 710


>gi|223040968|ref|ZP_03611229.1| prolyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222877765|gb|EEF12885.1| prolyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 570

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/231 (45%), Positives = 148/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  +E P+DA +ASHK +LR G   Q   G+Y++LPLG++ L+N+  I++EE
Sbjct: 1   MKFSKLYAPTAKEAPKDASLASHKFLLRAGYAEQVGSGLYNFLPLGKRVLENIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S+  + SADLW ESGR+D YGKE+LR  DR +   +  PT+EE +  + R 
Sbjct: 61  LDEAGAQEISMSFVTSADLWRESGRFDVYGKELLRFKDRKENDFVLSPTNEESVVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E     ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFLMKDGYSFHANAEDLDREFDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF RLGL    +RA+SG IGG  S EF+VLA++GE  +   ++     
Sbjct: 181 YSKIFTRLGLNFRAVRADSGAIGGSGSKEFMVLANSGEDDIIVCENCDYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/244 (31%), Positives = 116/244 (47%), Gaps = 17/244 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+G      +I     GE+Q+ C  +  D+     +                +      
Sbjct: 342 GPVGLKGVEFYIDKELEGESQMICGANERDYHFVGVSV--------------SSFNSERF 387

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   K  D  P      +  +GIEVGHIF  GTKYS PM+ATF   +GK     MG Y
Sbjct: 388 KDLTAVKAGDKCPCCGGNLSVSKGIEVGHIFKLGTKYSEPMNATFLDENGKAKPFIMGCY 447

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+VA  +E+ HD KGIIW ++++PFK  +I     D+      + +Y  L + G 
Sbjct: 448 GIGVSRLVAVAVEAKHDEKGIIWNETLSPFKFEIIISNLKDEEGVKFAQGLYEDLREAGV 507

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G + +  +L+GFP  VIVG K +++  VE+  R   ++E +   E++  
Sbjct: 508 SVLLDDRNERFGVKMSEFELMGFPYAVIVG-KGLAEGTVELVTRGGLVKETVKASEILAR 566

Query: 438 ASHR 441
               
Sbjct: 567 LKSL 570


>gi|119472992|ref|ZP_01614827.1| threonyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119444612|gb|EAW25923.1| threonyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 586

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 135/397 (34%), Gaps = 49/397 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  L+E    AE   H+ + +   +    + + G+  W   G      +   +R
Sbjct: 227 KQLKAYLKRLEE----AEKRDHRRIGKALDLWHWQEEAPGMVFWHNDGWSIYRELEEFVR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+       E+  P +    LW +SG ++ Y   M        +     P +      IF
Sbjct: 283 EKLREYSYEEVKGPMMMDRSLWEKSGHWEKYSDAMFTTESEK-REYAIKPMNCPGHVQIF 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R+E      G+MR R F   DA+ F  T E      +  
Sbjct: 342 NQGLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHVF-CTEEQVMDEVSAC 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G   I ++  + P       E    A+        + D     +P E  
Sbjct: 401 IKMVYDTYETFGFDKIVVKLSTRPEKRIGDDEIWDKAEVALADALKANDIEFDYLPGEGA 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +   I                                    R  + G +      ++LP
Sbjct: 461 FYGPKIEFTLYD---------------------------CLDRAWQCGTV---QLDFALP 490

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   + +    V +    +G++     ++   + G    W   +AP ++ ++NI
Sbjct: 491 GRLGATYVAENNERRTPVMIHRAILGSIERFIGILTEEYAGLFPTW---LAPKQVVIMNI 547

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                   D   +I  +L+K+G     D   E+IG +
Sbjct: 548 TDK---QADYVHEIVQKLNKLGIRAAADLRNEKIGFK 581


>gi|85057943|ref|YP_456859.1| threonyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123738887|sp|Q2NIG3|SYT_AYWBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84790048|gb|ABC65780.1| threonyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 641

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 168/444 (37%), Gaps = 35/444 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD +  + +L L      +   G+  WLP G      V   I +++    
Sbjct: 229 YLQLLEERKERDHKKINKELDLFM-FNKEVGLGLPFWLPKGATVRRIVERYIVDKELSYD 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
              +  P + + +L+  SG  D Y   M  +    N + ++  P +      I++ +  S
Sbjct: 288 YHHVYTPIMANTELYRISGHLDHYASNMFPIMSLENGEKLVLRPMNCPHHMMIYKKNPHS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP    ++ +  R E      G+ R RE  + DA+ F   P+  K    K+    L 
Sbjct: 348 YKELPLRIAELGMMHRFEKSGAVSGLQRVREMTLNDAHIF-ARPDQIKEEIKKIINLILE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +K+  +R                      T+ + + D M +       +   I 
Sbjct: 407 VYCDFNIKNYELRLSYRN--------------PNNTEKYFNDDQMWYNAEKTLKE--TIK 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L    ++     A      + ++F++L   + +S   ++    F    K+      TF 
Sbjct: 451 ELGLPFKEAIGEAAFYGPKLDVQVFNALGNEETLSTVQLD----FLLPQKF----DLTFI 502

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D K H  V +    +  M    A +     G   +W   +AP ++ LI + A   +  
Sbjct: 503 GEDNKHHRPVVIHRAVVSTMERFLAHLVEETKGVFPLW---LAPVQVLLIPVSA--PLHF 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +KI   L      V  +     +G +   A  L  P QV++G   + ++ +  +   
Sbjct: 558 EFSQKIKETLQLQNFRVEINSKDNTLGYKIREAQKLKIPYQVVIGDHEMINNLITFRKYG 617

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           + ++  + ++E ++    +    +
Sbjct: 618 SHLQTTIKVDEFVSLLKDKVLQKK 641


>gi|260905197|ref|ZP_05913519.1| prolyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 615

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 108/282 (38%), Positives = 156/282 (55%), Gaps = 2/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+   +E+P  AE+ASHKL+ R G I + + GIY+WLPLG + L  + AI+REE
Sbjct: 3   LRMSSLFVRTQKEDPVGAEVASHKLLHRAGYIRRSAPGIYTWLPLGLQVLGKIEAIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+ E+  P L  AD + +SGR++++G ++  L DR D   I  PTHEEV T + + 
Sbjct: 63  MARAGSQEVHFPGLLPADPYRKSGRWEAFGPDLFHLKDRKDNDYILAPTHEEVFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQ+Q K+RDE RPR G++R REF+MKDAYSFD+   G   SY  M V+
Sbjct: 123 LYSSYKDLPLSIYQVQTKYRDEARPRAGLLRGREFIMKDAYSFDIDDAGLDASYEAMRVA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+  +P++A  G +GG  + EFI  ++ GE     S       + +  +   
Sbjct: 183 YLRAFARLGVPCLPVKATPGAMGGSGTEEFIYPSEVGEDTFVRSPGGYAANVEAVTSIVP 242

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           + I   +                 E L D+   N     R  
Sbjct: 243 ETIPFEN--SPAAHVEDTPDTPTIETLVDAANANHPREDRAW 282



 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 3/158 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G IF  G KY+  +       +GK   V MGSYG+G  RV+A + E  H   G++
Sbjct: 433 RGVEIGQIFKLGRKYAEALDLKVLDQNGKATTVTMGSYGLGVTRVMACIAEEYHSEGGLL 492

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLL 398
           WP  +AP  + +I     +++  +A EK+ A L   G  V  DD      G +FA A+L+
Sbjct: 493 WPQHLAPADVHIIAAGKGEEIA-EAAEKLTAELESEGVSVLLDDRLKVSPGFKFADAELI 551

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G P  ++VG + ++D  VE+++RL   ++++ + EV+ 
Sbjct: 552 GIPTVIVVG-RGLADGVVEVRNRLADEKQEVPVAEVVA 588


>gi|295836236|ref|ZP_06823169.1| proline-tRNA ligase [Streptomyces sp. SPB74]
 gi|295825921|gb|EFG64555.1| proline-tRNA ligase [Streptomyces sp. SPB74]
          Length = 563

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 140/226 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + G++SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGVWSWLPLGKKVLDNISQIVREEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEATGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REFLMKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFLMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +IF RLGL    + A SG +GG  S EF+  A  GE       + 
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFADCPNC 231



 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 6/229 (2%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G    + +   +                  ++V           DV   +  D  P  
Sbjct: 338 PQGLKIRYIADPRVAPGTAWVTGANKPDTHARNVVAGRDFEVDDYLDVVVVQEGDPCPNC 397

Query: 275 KR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +     R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E +
Sbjct: 398 GQGLHLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQT 457

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            D KG+ WP  VAP  + ++   A   +  +   ++  +L+  G  V  DD  G   G +
Sbjct: 458 ADDKGLCWPAEVAPADVHVV--AAGKVLQTELALEVADKLAAAGARVLVDDRAGVSPGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           F  A+L+G P  VI G +  ++  VE+K R TG RE++ +EE +   + 
Sbjct: 516 FTDAELIGVPKTVIAGRR-AAEGIVELKDRRTGEREELPVEEAVARLTA 563


>gi|119953497|ref|YP_945706.1| threonyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|254783510|sp|A1R0E4|SYT_BORT9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119862268|gb|AAX18036.1| threonyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 583

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 163/446 (36%), Gaps = 42/446 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E  R D      +L L +  +H+    G+  + P G +    +    REE  
Sbjct: 172 KAYLKLREEIKRRDHRKLGRELDLFS--VHEEIGPGLIFFHPSGARIRALIEDFWREEHF 229

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  + LW  SG  D Y + M    + +       P +      I+ +  
Sbjct: 230 KNGYDILFTPHVGKSWLWETSGHLDFYKESMFEKMEMDKSNYYVKPMNCPFHIAIYNTGR 289

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LPF + ++   +R E      G MR R F   DA+    T +  K    ++    
Sbjct: 290 HSYRDLPFRWAELGTVYRYEKVGALHGTMRVRGFTQDDAHII-CTYDQVKFEVQEVLRFA 348

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++++ G  ++     + P       +  +++     +   +              +  
Sbjct: 349 LYMWNKFGFTALKAYLSTKPEKSVGDEDDWIMSVKVLKEALINLGIDYDIDEGGGAFYGP 408

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I L  I                    DSL    ++S    +    F    ++      T
Sbjct: 409 KIDLKII--------------------DSLGREWQMSTIQFD----FNLPARF----KMT 440

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DGK+     +    +G++     ++   + G   +W   +AP ++ +I +     +
Sbjct: 441 YTAEDGKERQPFMIHRALLGSIERFFGILVEHYGGAFPVW---LAPLQVVIIPVNN---I 494

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   ++ +R  K G  +  D D   ++ ++         P   IVG K V + K+ I+
Sbjct: 495 VEEYALEVLSRFKKEGIRIKLDNDCNMRMNAKIRQYQSQKVPYMFIVGEKEVVEGKISIR 554

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       + L+E + +   + SN 
Sbjct: 555 TRTNEQINGLELKEALEFVKLKVSNK 580


>gi|292655832|ref|YP_003535729.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291370664|gb|ADE02891.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 643

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 158/446 (35%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQN 62
           + FL + +E   RD      +L L    I +    G+  + P G++ LD +    ++   
Sbjct: 229 EEFLEMREEAKERDHRKLGQELNLFA--IDETTGPGLPLYQPNGKRILDELADYAKQLNL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L   +LW +SG Y++Y  +M  L D ND+     P +      IF    
Sbjct: 287 DAGYDPVETPHLFRTELWKKSGHYENYVDDMF-LLDVNDEEYGLKPMNCPGHATIFDQQS 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  +++    +R E R    G+ R   F + D + F + P+  +   N +  + 
Sbjct: 346 WSYRDLPVRYFEDGKVYRKEQRGELSGLSRVWSFTIDDGHLF-VRPDQIEDEINLIIDNI 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +F   GL +  +   + P     S E    A+T    V             +      
Sbjct: 405 LTVFDTFGLDA-EVALATRPDKSVGSDEIWEQAETQLRAVLDDSGIDYGIEAGDG----- 458

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +    D+L          ++                 T
Sbjct: 459 ---------------AFYGPKIDFAFKDALGRKWDGPTVQLDFNMPDR--------FDLT 495

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D +DH  V +     G+      V+    +GK   W   +AP ++ ++ I      
Sbjct: 496 YTGEDNEDHQPVMIHRALYGSYERFFMVLIEHFNGKFPFW---LAPEQVRILPI---SDD 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +K+   L+     V  +D    +G +   A     P  VIVG     D  + ++ 
Sbjct: 550 QIGYAKKLQYELND--FRVDIEDRSWTLGRKIREAQTDRVPYMVIVGGDEEEDGTISVRD 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     +D+S+E   ++    +   R
Sbjct: 608 RKEREAKDVSVEAFRDHLRSEYDEKR 633


>gi|311246798|ref|XP_003122346.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Sus scrofa]
          Length = 801

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 160/432 (37%), Gaps = 44/432 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 390 EKLQEEAKTRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNALMDFIREEYHQRSFTE 449

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + S+ LW  SG +  Y + M    D +       P +      +F    +S+R +
Sbjct: 450 VLSPNMYSSKLWEASGHWQHYRENMFTF-DVDKDTFALKPMNCPGHCLMFAHRPRSWREM 508

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL      +   R F   DA+ F  T E  +            ++  
Sbjct: 509 PIRFADFGVLHRNELSETLSSLTHVRRFQQDDAHIF-CTVEQIEEEIKGCLKFLQSVYST 567

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P   D   E   + D  E Q+  S      P                
Sbjct: 568 FGFSF-QLNLSTRPE--DFLGEV-AIWDEAEKQLQNSLVEFGKP---------------- 607

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             +      A      + K+ D++    + +   ++    F    +++L    T+   +G
Sbjct: 608 -WKMKPGDGAFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKEG 658

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K + V +    +G++  + A++  +++GK   WP  ++P ++ +I +      C    
Sbjct: 659 DDKKNPVIIHRAILGSVERMIAILSENYEGK---WPFWLSPRQVIVIPVGP---ACEKYA 712

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++     + G     D D    +  +   A L  +   ++VG K  +++ V ++ R   
Sbjct: 713 LQVSNEFLEEGFMADVDLDHSCTLNKKIQNAQLAQYNFILVVGEKEKANNAVSVQTRDNK 772

Query: 425 IREDMSLEEVIN 436
           I  ++S+   I+
Sbjct: 773 IHGEISVTSAID 784


>gi|227432351|ref|ZP_03914343.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351872|gb|EEJ42106.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 652

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 148/441 (33%), Gaps = 35/441 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD  +    L L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRVIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELSNGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  D   +   P +      +F    +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFNHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++ +  R E      G+ R RE  + D ++F + PE  +  +  +    + ++ 
Sbjct: 357 LPMRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTF-VEPEKLEEEFKSILTMMMGVYR 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +K+   R                  D   T+ +   D M      +     D + L+
Sbjct: 416 DFNIKNYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQKQLKTAMDDLGLD 461

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +     A      + +   +L   + +S   ++    F    ++       + G D
Sbjct: 462 --YFEAEGEAAFYGPKLDVQTKTALGNEETLSTIQLD----FLLPERF----DLKYIGRD 511

Query: 307 G--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G      V +    +G M    A +   + G    W   ++P ++ +I +        + 
Sbjct: 512 GLDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHGNY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L   G     +    ++G     A     P  +++G   V  + V ++     
Sbjct: 567 ANAVQQKLQDAGLRANVETKDAKMGYLIREAQTNKIPYTLVLGDSEVDSNTVTVRKYGDT 626

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS +E         SN 
Sbjct: 627 KTVTMSYDEFQYLILSDVSNY 647


>gi|227496236|ref|ZP_03926533.1| threonine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834224|gb|EEH66607.1| threonine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 679

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 146/454 (32%), Gaps = 44/454 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +   + E   R G
Sbjct: 245 YQTRLAEAAKRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGGMLRHEIEKYVIERHERAG 303

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRN----------DKAMIYGPTHEEV 113
              +  P +  A L+  SG    Y   M      D             +       +  +
Sbjct: 304 FDFVHTPEITKAGLFHTSGHLPYYADTMFPPMLADEETDAEGNVTKAGQEYYLKAMNCPM 363

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP   +++   +R E      G+ R R F   D++++  T E +  
Sbjct: 364 HNLIFRSRGRSYRELPLRLFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTREQAPE 422

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    ++ I    GL    +   +    G    +FI   +  E              
Sbjct: 423 EIKKQIEFFISILKAFGLTDFYLELSTRDEDGAKKDKFIGSDEDWEAATRTLSQVCA--- 479

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                      S    +       A      + ++ D++    ++S    +         
Sbjct: 480 -----------STGLDLVPDPGGAAFYGPKVSVQVKDAIGRTWQMSTIQYDFNQPER--- 525

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG     + + S  +G++     V+   + G    W   +AP ++ L
Sbjct: 526 -----FDLEYTAADGSHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPAW---LAPVQVRL 577

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +    +   D   ++ ARL + G  V  D   ++ G +   A     P  +I G +  
Sbjct: 578 IPVA---EAFDDYVTQVAARLRERGVRVETDLSDDRFGKKIRNASKEKVPFTLIAGGEDA 634

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               V  + R       + ++E I + +   +  
Sbjct: 635 EAGAVSFRFRDGEQTNGVPVDEAIEHIADVIARK 668


>gi|33863527|ref|NP_895087.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|81834835|sp|Q7TUU4|SYP_PROMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33640976|emb|CAE21434.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 599

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 148/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I + + GIY++LPL  + L  + +I++EE
Sbjct: 1   MRVSRLMLVTLRDIPADAEIASHQLLLRGGYIRRVTSGIYAYLPLMWRVLRKITSIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWRRSGRWQGYTAGEGLMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF         +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHSCEADLAMTYRAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D        
Sbjct: 181 DEAYQRIFSRCGLETVAVEADSGAIGGASSQEFMVTADAGEDLILISGDGHYAANQE 237



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 8/237 (3%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+ LAD   T++ C     +             +             A    +H+     
Sbjct: 367 FLRLADPTATELNCFVCGANQNNQHRTGMTWSKLGGVPKSVDLRKSQAGDRCIHDSSQI- 425

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RGIEVGHIF  G KYS  + A F    G      MG YGIG  R+  A +
Sbjct: 426 ------LEERRGIEVGHIFQLGRKYSEALEACFTNDQGTQEPFWMGCYGIGISRLAQAAV 479

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD  G+ WP ++APF++ ++     D+V +   E++Y+ L     +   DD  E+ G
Sbjct: 480 EQHHDEAGMKWPLAIAPFEVIIVVANIQDEVQQKLAEQLYSELQAADIEALLDDRTERAG 539

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +F  ADL+G P +V+VG +  +  +VE+  R +   + +S ++         + N+
Sbjct: 540 VKFKDADLIGIPWRVVVG-RDAAKGQVELIQRSSRKVQILSAKQAFTALVKDIAANQ 595


>gi|241895744|ref|ZP_04783040.1| prolyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241870787|gb|EER74538.1| prolyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 570

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 154/240 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SH++MLR G + Q + G+Y++LPL Q+ L+ +NAIIREE
Sbjct: 1   MKQSKVFIPTLRETPADAEVISHQMMLRAGYVRQVTAGVYAYLPLAQRVLNKINAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEM+ P L  A+LW ESGRY++YG  + +L +R+ + MI GPTHEE MT + R 
Sbjct: 61  MEKIDAIEMTAPVLLPAELWEESGRYETYGPNLFKLKNRHGRDMILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K RDE RPRFGV+R REF+MKDAYSF +   G   +Y KM  +
Sbjct: 121 DIKSYKRLPLTLYQIQTKLRDEDRPRFGVLRGREFIMKDAYSFSIDEAGLDDAYKKMETA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF R+GL    +  ++G +GG  S EF   A  GE  +  S +           D  
Sbjct: 181 YVNIFDRVGLNYRVIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSDESEYAANLEMAKDLY 240



 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 11/249 (4%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GP+G  +  E  ++AD   T         +  +      F  + +      +      
Sbjct: 332 SLGPVG--VGEEVKIIADEWVTD------MANIVVGGNEAGFHYLNANVDRDFRIDEVAD 383

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                  +   D+         +GIEVGHIF  GT+YS  M A    A+G+   V MGSY
Sbjct: 384 VRIAREGDPAIDNKGH--LQFTKGIEVGHIFKLGTRYSKSMGAQVLDANGRQADVIMGSY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++AA+ E + D  G+ WP +VAP+ + L+ IK  D+      + +   L   G 
Sbjct: 442 GIGVSRLLAAIAEQNADEHGLSWPAAVAPWDVHLVPIKYKDETQAKLTDDLNESLVAAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA +DL+G P++V VG K  SD  VE+K R      ++  +E+++ 
Sbjct: 502 EVLVDDRNERPGVKFADSDLIGLPVRVTVGKK-ASDGIVEVKLRQADEAIEVRADELVST 560

Query: 438 ASHRFSNNR 446
                  N+
Sbjct: 561 LQVFLDGNK 569


>gi|332220153|ref|XP_003259222.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 1
           [Nomascus leucogenys]
          Length = 718

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/462 (19%), Positives = 157/462 (33%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 286 LLRAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 345

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 346 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 405

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 406 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGSLRGLTRLRCFQQDDAHIFCTT 465

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 466 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 520

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 521 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 560

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G+M  +  V+  S  GK   WP  ++
Sbjct: 561 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSMERLLGVLAESCGGK---WPLWLS 612

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I +    +   +   +    L   G     D D G  +  +   A L  +  Q 
Sbjct: 613 PFQVVVIPVGTEQE---EYAREAQQSLQAAGLVSDLDADSGLTLSRRIRQAQLAHYNFQF 669

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 670 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 710


>gi|224532379|ref|ZP_03673009.1| threonine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224512686|gb|EEF83057.1| threonine--tRNA ligase [Borrelia burgdorferi WI91-23]
          Length = 581

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 164/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  ++     + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSNLKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEET 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P ++ +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ 
Sbjct: 494 --IVEDYAIKVFNKFKNGGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L+E + +   +  + 
Sbjct: 552 IRTRTNEQINGIKLDEALKFILFKIRDK 579


>gi|283470478|emb|CAQ49689.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
          Length = 567

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|251777990|ref|ZP_04820910.1| threonine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082305|gb|EES48195.1| threonine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 643

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 160/449 (35%), Gaps = 39/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T       +G+   +P G K +  +   I +E+ 
Sbjct: 226 LDEYLEAVEEAKKRDHNKLGRELKLFT-TDENVGQGLPLLMPKGAKIVQTLQRWIEDEEE 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
           R G +    P +  +DL+  SG +D Y   M  L D   +++     P        I+ +
Sbjct: 285 RRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDEEVFALRPMTCPFQYTIYNA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    FR+E      G++R R+F + D +   +TPE  +  +  +  
Sbjct: 345 EQHSYRDLPIRYGETSTLFRNESSGEMHGLIRVRQFTLADGHLI-VTPEQLEEEFKGVLE 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I   LG+              D+S+ F    D   T+ + +               
Sbjct: 404 LIKYIMKTLGIDE------------DISYRFS-KWDPNNTEKYINDPDAWNKTQDTMRTI 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            D + ++ +               +E  F     + +      +   I      ++L   
Sbjct: 451 LDHLKIDYVEAD------------DEAAFYGPKLDLQFKNVHGKEDTIITLQIDFALAER 498

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++   +G K     +    IG      A++   + G    W   ++P ++ ++ I  
Sbjct: 499 FDMSYIDKNGEKKRPYIIHRSSIGCYERTLAMLIEKYAGAFPTW---LSPVQVKVLPI-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E +   L   G  +  D   E+IG +   A L   P  ++VG K  ++S+V
Sbjct: 554 -SDKYNDYAESVVKSLRNKGVRIEADYRAEKIGYKIREARLERTPYILVVGEKEAANSEV 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       M L+       +  +  
Sbjct: 613 SVRSRKNDDEGAMKLDIFTERLLNEIATK 641


>gi|116617774|ref|YP_818145.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122272025|sp|Q03YF0|SYT_LEUMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116096621|gb|ABJ61772.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 652

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 148/441 (33%), Gaps = 35/441 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD  +    L L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRVIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELSNGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  D   +   P +      +F    +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFNHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++ +  R E      G+ R RE  + D ++F + PE  +  +  +    + ++ 
Sbjct: 357 LPMRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTF-VEPEKLEEEFKSILTMMMGVYR 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +K    R                  D   T+ +   D M      +     D + L+
Sbjct: 416 DFNIKDYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQKQLKTAMDDLGLD 461

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +     A      + +   +L   + +S   ++    F    ++       + G D
Sbjct: 462 --YFEAEGEAAFYGPKLDVQTKTALGNEETLSTIQLD----FLLPERF----DLKYIGRD 511

Query: 307 G--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G      V +    +G M    A +   + G    W   ++P ++ +I +        + 
Sbjct: 512 GLDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHGNY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L   G     +    ++G     A     P  +++G   V+ + V ++     
Sbjct: 567 ANAVQQKLQDAGLRANVETKDAKMGYLIREAQTNKIPYTLVLGDSEVNSNTVTVRKYGDT 626

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS +E         SN 
Sbjct: 627 KTVTMSYDEFQYLILSDVSNY 647


>gi|258423896|ref|ZP_05686781.1| prolyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257845925|gb|EEV69954.1| prolyl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 567

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  E +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELAEALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|297623866|ref|YP_003705300.1| threonyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165046|gb|ADI14757.1| threonyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 665

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 159/441 (36%), Gaps = 33/441 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L + T +      G+  WLP G   ++ +  + +E + R G 
Sbjct: 241 LWRLEEAKKRDHRKLGAELEIFT-LDDDIGPGLPLWLPRGAVIVEEIEKLAKEMERRAGY 299

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            ++  P +    L+  SG    Y + M    + ++      P +      IF +  +SYR
Sbjct: 300 QQVRTPHVTKEQLFTRSGHLPYYAESMFPPMELDNVRYYLKPMNCPFHHKIFAARPRSYR 359

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +    +R E      G+MR R   M DA+ +  TPE  +  +  +   YL  F
Sbjct: 360 ELPLRLAEYGTCYRYEDHGALMGLMRVRSMQMNDAHIY-CTPEQFEDEFMGVIALYLEYF 418

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G++   MR                 +  G  + + +   +     +      +   +
Sbjct: 419 RLFGIRDYVMRLSK-------------HSRAGLGKKYVNNPELWEQTEAMVRGALERGGI 465

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N I  +     A      + +++  +     ++   ++      FG +Y           
Sbjct: 466 NFI--EVEDEAAFYGPKIDVQIYSVIGREFTLATNQVDFAVPARFGLEY--------VAE 515

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG +   + +    +     +   +     G   +W   +AP ++ ++ I          
Sbjct: 516 DGSRKTPLCLHRAPLSTHERLVGFLLEHFAGDFPLW---LAPEQVRVVPIA---DRHNAY 569

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + + ARL++ G     D  GE++ ++   A+LL  P  VIVG K V    +  + R   
Sbjct: 570 AQSLKARLAEAGLRAEADLRGERMNAKVRDAELLKVPYTVIVGDKEVEAGALSFRSRKEP 629

Query: 425 IREDMSLEEVINYASHRFSNN 445
            ++ +S+E  + +        
Sbjct: 630 EQKGVSVEAFVAHLQAHVGAR 650


>gi|187932904|ref|YP_001884583.1| threonyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|238691610|sp|B2TIT5|SYT_CLOBB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187721057|gb|ACD22278.1| threonine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 643

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 161/449 (35%), Gaps = 39/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T       +G+   +P G K +  +   + +E+ 
Sbjct: 226 LDEYLDAVEEAKKRDHNKLGRELKLFT-TDENVGQGLPLLMPKGAKIVQTLQRWVEDEEE 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
           R G +    P +  +DL+  SG +D Y   M  L D   +++     P        I+ +
Sbjct: 285 RRGYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDEEVFALRPMTCPFQYTIYNA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    FR+E      G++R R+F + D +   +TPE  +  +  +  
Sbjct: 345 EQHSYRDLPIRYGETSTLFRNESSGEMHGLIRVRQFTLADGHLI-VTPEQLEEEFKGVLE 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +   LG+              D+S+ F    D   T+ + +               
Sbjct: 404 LIQYLMKTLGIDE------------DISYRFS-KWDPNNTEKYINDPEAWNKTQDTMRTI 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            D + +N +               +E  F     + +      +   +F     ++L   
Sbjct: 451 LDHLKINYVEAD------------DEAAFYGPKLDLQCRNVHGKEDTLFTVQIDFALAER 498

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++   +G K     +    IG      A++   + G    W   ++P ++ ++ I  
Sbjct: 499 FDMSYIDKNGEKKRPYIIHRSSIGCYERTLAMLIEKYAGAFPTW---LSPVQVKVLPI-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E +   L   G  +  D   E+IG +   A L   P  ++VG K  ++++V
Sbjct: 554 -SDKYNDYAESVVKSLRNKGVRIEADYRAEKIGYKIREARLERTPYILVVGEKEAANNEV 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R       + L+       +  +  
Sbjct: 613 SVRSRKNDDEGAIKLDAFTERLLNEIATK 641


>gi|290889941|ref|ZP_06553027.1| hypothetical protein AWRIB429_0417 [Oenococcus oeni AWRIB429]
 gi|290480383|gb|EFD89021.1| hypothetical protein AWRIB429_0417 [Oenococcus oeni AWRIB429]
          Length = 663

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 168/448 (37%), Gaps = 40/448 (8%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   ++   + +   H+ + +   +     +   G+  WLP G      +   + E++ +
Sbjct: 233 LEAQKKALEERKERDHRTIGKQMELFFTNPEIGAGLPVWLPNGAAIRRTIEDYLVEKERQ 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHI 122
              + +  P + + DL+  SG +D Y  +M   +   + + +   P +     +IF    
Sbjct: 293 NSYMNVYTPVVSNLDLYKRSGHWDHYRDDMFPAMTADDGEQLELRPMNCPSHIEIFEHEP 352

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP+   +     R E      G+ R RE  + D ++    PE  +  +  +    
Sbjct: 353 RSYRDLPYRIAEFGQMHRWEKSGALTGLSRVREMTLNDGHTVVA-PEQVEPEFKGILQLI 411

Query: 182 LRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             ++H  G        R                  D   T+ +   D M     +     
Sbjct: 412 RDVYHDFGFTDQDYRFRLSYR--------------DPKNTKKYYDDDAMWEHAQAALKRA 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + L+    +     A      + +   +L   + +S   ++    F    ++     
Sbjct: 458 MDDMGLD--YFEAEGEAAFYGPKLDIQFKTALGNEETMSTIQLD----FLLPERF----D 507

Query: 300 ATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DGKDH   +   G +G M    A +   + G+   W   +AP +  +I +    
Sbjct: 508 MKYTGEDGKDHRPVLIHRGVVGTMERFVAFLIEKYKGQFPTW---LAPVQAVVIPVNYG- 563

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVE 417
               D    IY++L K G  +  D+  E++G     A + L  P  ++VG + + D+ V 
Sbjct: 564 -AHGDYARNIYSKLMKDGRRIKLDNRDEKLGYLIRDAQVNLKTPYILVVGDQELRDNSVT 622

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R +   ++M ++E     +   +N 
Sbjct: 623 VRFRGSDQTKEMKIDEFEEMINDDVANY 650


>gi|323450323|gb|EGB06205.1| hypothetical protein AURANDRAFT_29703 [Aureococcus anophagefferens]
          Length = 750

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 147/435 (33%), Gaps = 38/435 (8%)

Query: 12  QENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +    +A    H+ +    +     Q S G   + P G +  + + A I+++       E
Sbjct: 319 KAMLAEAAKRDHRKVGGAQKLFFFDQLSPGSAFFEPHGARIYNGLIAFIKDQYWLREYTE 378

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + + DLW  SG    Y  +M    D         P +      +F+  ++S+R+L
Sbjct: 379 VVTPNVYNFDLWHTSGHALHYKDDMFCF-DVEGAEFGMKPMNCPGHCLMFKHDVRSWRDL 437

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +    +  R+EL     G+ R R F   D + F    +  +            ++  
Sbjct: 438 PMRYADFGVLHRNELSGALSGLTRVRRFQQDDGHIF-CREDQVEEEVRGALEFMKHVYDV 496

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G+    +   + P           + D  E  +  +                D  +   
Sbjct: 497 FGMGYR-LELSTRPKKALG---DKAVWDRAEAALASA---------------MDAFAGKG 537

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-GAD 306
                    A      + K+ D+L    + +   ++    F    ++ L        G +
Sbjct: 538 GWRVNPGDGAFYGPKIDIKVTDALERVHQCATIQLD----FQLPIRFDLKYRVGDTSGEE 593

Query: 307 GKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G      + +    +G++  + AV+     GK   WP  ++P ++ +I +   +    D 
Sbjct: 594 GGAVTRPIIIHRAMLGSVERMMAVLTEHWGGK---WPFWISPRQVCVIPVGPTN---FDY 647

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   +      V  DD G  +  +   A L  +   ++VG   VSD  V ++ R   
Sbjct: 648 ARAVRKTIRAARFFVDVDDSGNTLPKKVRNAQLAQYNFILVVGDNEVSDGTVTVRTRANT 707

Query: 425 IREDMSLEEVINYAS 439
           +   + L + +    
Sbjct: 708 VEGTVPLADFVARCR 722


>gi|114559283|ref|XP_001168777.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 3 [Pan
           troglodytes]
          Length = 666

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 158/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 234 LLRAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 294 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 353

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 354 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 413

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 414 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 468

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 469 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 508

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 509 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 560

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q 
Sbjct: 561 PFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQF 617

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 618 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 658


>gi|114559279|ref|XP_001168807.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 4 [Pan
           troglodytes]
          Length = 657

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 158/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 225 LLRAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 285 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 344

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 345 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 404

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 405 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 459

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 460 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 499

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 500 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 551

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q 
Sbjct: 552 PFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQF 608

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 609 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 649


>gi|114559269|ref|XP_001168944.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 9 [Pan
           troglodytes]
          Length = 718

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 158/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 286 LLRAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 345

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 346 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 405

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 406 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 465

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 466 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 520

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 521 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 560

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 561 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 612

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q 
Sbjct: 613 PFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQF 669

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 670 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 710


>gi|110668486|ref|YP_658297.1| threonyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121687233|sp|Q18H54|SYT_HALWD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109626233|emb|CAJ52691.1| threonine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 642

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 155/437 (35%), Gaps = 42/437 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L + +      G+  + P G+K L+ +++  R      G   +  
Sbjct: 237 KAKERDHRKIGQELDLFS-IPDITGPGLPLYHPDGKKILNELSSFARSLNLEAGYEPVET 295

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L   +LW +SG Y++Y  +M  L D +D+     P +      IF  H  SYR+LP  
Sbjct: 296 PHLFRTELWKQSGHYENYVDDMF-LLDVSDEEYGLKPMNCPGHATIFDQHSWSYRDLPVR 354

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           +++    +R E R    G+ R   F + D + F   PE  +     +  +   +    GL
Sbjct: 355 YFEDGKVYRKEQRGELSGLSRVWSFTIDDGHLF-CQPEQIEQEVTHVMDAIYSVLDTFGL 413

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           ++  +   + P       E    A+T    V  S++      P +               
Sbjct: 414 EA-HVALATRPEKSVGGDEIWENAETQLRSVLESQNIDYDLEPGDG-------------- 458

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      +    D+L          ++                 T+ G D  DH
Sbjct: 459 ------AFYGPKIDFAFEDALGRQWDGPTVQLDFNMPDR--------FELTYTGEDNTDH 504

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G+      V+    +GK  +W   +AP ++ ++ I            +I 
Sbjct: 505 QPVMIHRALYGSYERFFMVLIEHFNGKFPLW---LAPDQVRILPI---SDDQLGYAHRIK 558

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             LS     V  +D    +G +   A     P  +I+G   VS   + ++ R    ++D+
Sbjct: 559 NELSD--FRVSIEDRAWTLGRKIRAAQEERVPYMIIIGDDEVSTETISVRDRKEREKQDV 616

Query: 430 SLEEVINYASHRFSNNR 446
            L    ++    + N R
Sbjct: 617 DLSTFHSHLKSEYENKR 633


>gi|313829616|gb|EFS67330.1| prolyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
          Length = 581

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/244 (40%), Positives = 144/244 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F    +E P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFARPRREAPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLN 246
           + ++
Sbjct: 241 LPID 244



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ 
Sbjct: 409 PDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMGSYGLGVSRAVAAIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ G +V  DD     G
Sbjct: 469 EGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEAGLEVLLDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 528 VKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572


>gi|297191728|ref|ZP_06909126.1| prolyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151037|gb|EDY65325.2| prolyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 691

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 99/230 (43%), Positives = 141/230 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG++ L+NV  ++REE 
Sbjct: 133 RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKRVLENVTRVVREEM 192

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 193 DAIGAQEVLLPALLPKEPYEATGRWEEYGAELFRLKDRKGADYLLGPTHEEIFTQLVKDQ 252

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF MKD+YSFD + EG   SY     +Y
Sbjct: 253 CTSYKDLPVILYQIQTKYRDEARPRSGILRGREFQMKDSYSFDTSDEGLAESYALHREAY 312

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +RIF RLGLK   + A SG +GG  S EF+  A  GE             
Sbjct: 313 VRIFERLGLKHKIVSAVSGAMGGSASEEFLAPAPAGEDTFVYCPSCDYAA 362



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR- 276
           E   + +   +                  ++V           DV   +  D  P     
Sbjct: 469 EKVRYIADPRVAPGTAWITGANRAGFHAKNVVAGRDFQVDDYLDVVVVEDGDPCPSCGTG 528

Query: 277 -VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R IE+GHIF  G KY+        G +GK   V MGSYG+G  R VAA+ E + D 
Sbjct: 529 LKLDRAIEIGHIFQLGRKYADAFQLDVLGQNGKPVRVTMGSYGVGVSRAVAALAEQTADE 588

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           +G+ WP  +AP  + ++   A   +  +    +  +L   G  V  DD  G   G +F  
Sbjct: 589 QGLCWPREIAPADVHVV--AAGKALQTELALDVAEQLGAAGLRVLVDDRAGVSPGVKFTD 646

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           A+L+G P  ++ G +      +E+K R TG RE++++ + +    
Sbjct: 647 AELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVADAVARLR 690


>gi|256824985|ref|YP_003148945.1| prolyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688378|gb|ACV06180.1| prolyl-tRNA synthetase, family II [Kytococcus sedentarius DSM
           20547]
          Length = 596

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 96/255 (37%), Positives = 145/255 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P DAE+  H+L++R G + + + GIY+WLPLG K ++ V  I+REE
Sbjct: 3   MRMSTLFLRTLREDPTDAELPGHRLLVRAGYVRRVAPGIYTWLPLGLKVMEKVKGIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E++ P+L   + +  S R+  YG ++ RL DR    M+ GPTHEE+ T   + 
Sbjct: 63  MEAIGDQEIAFPSLLPREPYEASNRWTEYGDDLFRLTDRKGADMLLGPTHEEMFTLAVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   +QI  K+RDELRPR GV+R REF MKDAYSFD+   G + +Y +   +
Sbjct: 123 LYTSYKDLPLGLFQILPKYRDELRPRAGVLRGREFTMKDAYSFDVDEAGLEAAYQRHRKA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F RLG + + + A+SG +GG  S EF+ + D+GE      +      + +      
Sbjct: 183 YTRVFDRLGFEYVAVHADSGAMGGSASEEFLAVMDSGEDTFVRDESGYAANVEAVQMPVV 242

Query: 241 DIISLNSIVEQWTAP 255
            + +  +        
Sbjct: 243 PVPTDEAERTALWGH 257



 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 82/146 (56%), Gaps = 3/146 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GHIF  GTKY+  +       +GK   VQMGSYGIG  R V  V E+ HD  G++
Sbjct: 432 RGVEMGHIFQLGTKYAEALGLKVLDQNGKLVTVQMGSYGIGITRAVGVVAETHHDEIGLV 491

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  ++P  + ++     D    +  E++ A L + G  V  DD  +   G +F  A+L+
Sbjct: 492 WPRELSPADVHVVA-TGKDAAVLEKAEELTAALEQQGLTVLLDDRPKVSPGVKFKDAELI 550

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTG 424
           G P  ++VG K +++ +VEIK R  G
Sbjct: 551 GVPTILVVG-KGLAEGEVEIKDRAAG 575


>gi|318041217|ref|ZP_07973173.1| threonyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 570

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 141/422 (33%), Gaps = 38/422 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD       L L + +  +   G+  W P G +    +  + RE     G   
Sbjct: 161 RQEEAKRRDHRRIGTDLDLFS-IEDEAGAGLVFWHPRGARMRLLIENLWRELHFAAGYEL 219

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW  SG  D Y + M      +++     P +       + S ++SYR L
Sbjct: 220 LYTPHVADISLWKTSGHLDFYSESMFGPMQVDEREYQLKPMNCPFHVLTYASTLRSYREL 279

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + ++   +R E      G+MR R F   DA+ F L P+        +     +I   
Sbjct: 280 PIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCL-PDQISDEILAILNLTEQILST 338

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
              +   +   + P           LA  G  +    K +                    
Sbjct: 339 FDFRHYEINLSTRPEKSIGEDAVWELATQGLIEALDRKGWAYKIDEGGG----------- 387

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + S   ++    F    ++       +  ADG
Sbjct: 388 ---------AFYGPKIDLKIEDAIGRMWQCSTIQLD----FNLPERF----DLEYVAADG 430

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            +   + +     G++     ++  ++ G    W   +AP +I L+ +       RD   
Sbjct: 431 SRQRPIMIHRAIFGSLERFFGIMTENYAGDFPFW---LAPEQIRLLPVT---DEVRDYAA 484

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L   G     D  G+++G      + +  P+  ++G+K     ++ ++ R  G  
Sbjct: 485 GVAAELQAAGVRASIDHSGDRLGKLIRNGEQMKIPVLGVIGAKEAESGQISLRSRRDGDL 544

Query: 427 ED 428
             
Sbjct: 545 GS 546


>gi|49483426|ref|YP_040650.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425317|ref|ZP_05601742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427978|ref|ZP_05604376.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430611|ref|ZP_05606993.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433371|ref|ZP_05609729.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436213|ref|ZP_05612260.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282905581|ref|ZP_06313436.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908556|ref|ZP_06316386.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910835|ref|ZP_06318638.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914040|ref|ZP_06321827.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282918962|ref|ZP_06326697.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282924085|ref|ZP_06331761.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|283958006|ref|ZP_06375457.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501072|ref|ZP_06666923.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510034|ref|ZP_06668742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293526620|ref|ZP_06671305.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427750|ref|ZP_06820382.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591292|ref|ZP_06949930.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|81175023|sp|Q6GHH2|SYP_STAAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49241555|emb|CAG40241.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271774|gb|EEV03912.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274819|gb|EEV06306.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278739|gb|EEV09358.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281464|gb|EEV11601.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284495|gb|EEV14615.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282314057|gb|EFB44449.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282316772|gb|EFB47146.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282322108|gb|EFB52432.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325440|gb|EFB55749.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327618|gb|EFB57901.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330873|gb|EFB60387.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283790155|gb|EFC28972.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920692|gb|EFD97755.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291096077|gb|EFE26338.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466978|gb|EFF09496.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|295128108|gb|EFG57742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576178|gb|EFH94894.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|312438357|gb|ADQ77428.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194151|gb|EFU24544.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 567

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|254423005|ref|ZP_05036723.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196190494|gb|EDX85458.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 618

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/455 (17%), Positives = 165/455 (36%), Gaps = 57/455 (12%)

Query: 8   LPILQENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   +    +A+   H+ + +  G+     +   G+  W P G      +   ++ EQ  
Sbjct: 201 LKEYKRRKEEAKRRDHRKLGKELGLFIFSDEVGPGLPLWTPKGTVLRSTLEDYLKGEQVA 260

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHI 122
            G + +  P +   DL+  SG +  Y +++  +  +  D+  +    +      I++S +
Sbjct: 261 RGYLPVVTPHVGRVDLFKTSGHWQKYSEDLFPMMGESEDEGFVLKAMNCPFHVQIYKSQL 320

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +    +R E     G + R R F   DA+ F +TP      + K+    
Sbjct: 321 RSYKELPIRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLF-VTPNQLNDEFLKVVDLI 379

Query: 182 LRIFH--------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                        R  L     + +S  IG D + E    A     +      F      
Sbjct: 380 QATLKVLQMDQSFRARLSFRDPKNKSKYIGSDEAWEKAQSAIRQAVETMGMDHFEGIGEA 439

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +      D I  +++                               R  ++G +      
Sbjct: 440 AFYGPKLDFIVRDALD------------------------------REWQLGTV---QVD 466

Query: 294 YSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           Y+LP   +  +   DG +   + +     G++  +  ++   + G   +W   +AP ++ 
Sbjct: 467 YNLPERFNLEYVAEDGSRQRPIMIHRAPFGSLERLIGILIEQYAGDFPLW---LAPEQVR 523

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           L+ +    +   +  E+    + K+G  V  D  GE++G     ++    P+  ++G + 
Sbjct: 524 LLPVA---ESHWEYAERAAIDMRKLGARVEVDKSGERLGKMIRNSEKAKIPVMSVIGDQE 580

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V+D+ + I+ R  G    ++L EV++         
Sbjct: 581 VTDNTLSIRTRKEGDLGAIALPEVLSRIKAALETR 615


>gi|226321417|ref|ZP_03796944.1| threonyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226233213|gb|EEH31965.1| threonyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 581

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 163/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  +      + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSNPKAYLSTKP-----------------DKSVGNDSDWEMSLKVLKET 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P ++ +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ 
Sbjct: 494 --IVEDYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       M L+E + +   +  + 
Sbjct: 552 IRTRTNEQINGMKLDEALKFILFKIRDK 579


>gi|311068179|ref|YP_003973102.1| prolyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310868696|gb|ADP32171.1| prolyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 564

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 107/231 (46%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADADAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIKNIQTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  LEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLDETYENMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S +     
Sbjct: 181 YTNIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYSDESTYAA 231



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E +V+               +  D    N +     A     +D+   +  D  P+ K  
Sbjct: 341 EVEVYADLAVKAMVNAVAGANEQDYHYKN-VNVDRDAAIKEYADLRFIQEGDPSPDGKGT 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD 
Sbjct: 400 IRFAEGIEVGQVFKLGTRYSEAMNATYLDENGRSQPMLMGCYGIGISRTLSAIAEQHHDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           KG+IWP SVAP+ + ++ +   +   ++  EK+Y      G DV +DD  E+ G +FA +
Sbjct: 460 KGLIWPKSVAPYDLHILALNMKNDAQKELAEKLYETFKTEGYDVLFDDRAERAGVKFADS 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DL+G P+++ VG +   +  VE+K R TG   ++S+EE+ ++ + +
Sbjct: 520 DLIGLPIRITVGKR-ADEGIVEVKIRKTGESSEVSIEELSDFINKQ 564


>gi|57234857|ref|YP_181114.1| prolyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|114152187|sp|Q3Z9I5|SYP_DEHE1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57225305|gb|AAW40362.1| prolyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 569

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKSGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDESYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +          
Sbjct: 181 YENVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKCNYAA 231



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 91/174 (52%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +    S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R+
Sbjct: 386 EGAACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGISHPIIMGCYGMGVGRL 445

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA IE +HD KGIIWP  +AP++I +  +   +     A EKIY  L   G +V +DD 
Sbjct: 446 LAAAIEQNHDEKGIIWPMPIAPYQIYICGLFLDNPAVSQAAEKIYTELEAQGVEVLFDDR 505

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
               G +F  ADLLG PL++ +  + +    VE+K R     E + LE ++   
Sbjct: 506 ELTAGVKFNDADLLGIPLRLTISPRNLDKGGVELKLRRNKESELVPLESIMERV 559


>gi|309789973|ref|ZP_07684549.1| threonyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308227993|gb|EFO81645.1| threonyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 594

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 140/447 (31%), Gaps = 38/447 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L          G+  + P G+     +   +RE Q 
Sbjct: 181 LEQHLHNLEEAKRRDHRKLGKELGLF-FFSEDVGPGLPIFTPKGEILRYEMERYVREVQT 239

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSH 121
           R G   +    +    L+  SG Y++Y   M        D      P +      +F   
Sbjct: 240 RYGYQHVWTGNVVKEQLYHRSGHYENYRDSMFPPMVESEDLVFRLKPMNCPSHMTLFNQM 299

Query: 122 -IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP  F +    +R E      G+ R R     D + F   P+  +  ++    
Sbjct: 300 GVISYRDLPMRFAEFATLYRYEDSGALNGLTRVRALTQDDCHIF-CRPDQIQEEFSLALN 358

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +          +R                    G+T  F + D       S     
Sbjct: 359 LIREVLSTYHFTDYKVRLSLR----------------GDTGKFVADDEKWEQATSALRAA 402

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D   +     +     A      +    D L    ++S   ++       G        
Sbjct: 403 LDANGVE--YTEEAGEAAFYGPKADFLARDVLGREWQLSTIQVDFIQPSRLG-------- 452

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G D + H  V +     G       V+   + G   +W   +AP +  +I I    
Sbjct: 453 CEYIGEDNQPHTPVVLHRAVTGTTERFLGVLIEHYAGAFPLW---LAPVQAVIIPITDK- 508

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +A + +  RL  VG  V  D   +++  +   A L   P  +I+G+K +    V +
Sbjct: 509 --QMEAAQAVRQRLMAVGMRVEVDSSRDRMQGKIRRAQLQKIPYMLIIGNKELEAGAVAV 566

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       + +++ I  A       
Sbjct: 567 RLRSGEDLGAIPVDDFIARAQEEIKTR 593


>gi|282903818|ref|ZP_06311706.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282595436|gb|EFC00400.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
          Length = 567

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|238063845|ref|ZP_04608554.1| threonyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885656|gb|EEP74484.1| threonyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 676

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 141/445 (31%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +    R +   
Sbjct: 259 KAYLKLLEEAARRDHRKLGVDLDLFS-FPDELGSGLAVFHPKGGIIRREMENYSRIKHEE 317

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +    L+  SG  D Y   M    +         P +  +   IFRS  +
Sbjct: 318 AGYAFVNTPHITKGHLYEVSGHLDWYADGMFPPMEVEGANYYLKPMNCPMHDLIFRSRGR 377

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R     DA+ F  T E        +    L
Sbjct: 378 SYRELPLRMFEFGTVYRYEKSGVVHGLTRVRGMTQDDAHIF-CTEEQMAGELKSLLAFVL 436

Query: 183 RIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +    GL    +   +  P     + E    A                P P+       
Sbjct: 437 ELLRDYGLDDFYLELSTRNPEKSVGTDENWERATEALRTAAEESGLHLVPDPA------- 489

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + +  D++    ++S   ++      FG +Y       
Sbjct: 490 -------------GAAFYGPKISVQAKDAIGRTWQMSTIQVDFNLPERFGLEY------- 529

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + ADG     V +     G++     V+   + G    W   +AP ++  I I+   + 
Sbjct: 530 -QAADGTRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIPIR---ED 582

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D      A L   G     D   +++  +   A     P  VI G   V+   V  ++
Sbjct: 583 HTDYLRGFVAALRAEGIRAQVDAGDDRMQKKIRTAQQQKIPFMVIAGDDDVAAGTVSFRY 642

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R    R  +   E + +     ++ 
Sbjct: 643 RDGSQRNGVPTAEAVAHVLDVVNSR 667


>gi|29376876|ref|NP_816030.1| prolyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227519897|ref|ZP_03949946.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|81838863|sp|Q831W7|SYP_ENTFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118138617|pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With A Prolyl-Adenylate Analogue
           ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
 gi|118138618|pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With A Prolyl-Adenylate Analogue
           ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
 gi|118138619|pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With Atp, Manganese And Prolinol
 gi|118138620|pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With Atp, Manganese And Prolinol
 gi|29344341|gb|AAO82100.1| prolyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227072691|gb|EEI10654.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0104]
          Length = 572

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 142/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE R R G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 224



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   +     +     +D   L ++         +  D+   +  D  P+   V
Sbjct: 340 EDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGV 399

Query: 278 S--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E + D 
Sbjct: 400 LAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +FA A
Sbjct: 460 RGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 520 DLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 562


>gi|153003352|ref|YP_001377677.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|166980097|sp|A7H7J7|SYP_ANADF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152026925|gb|ABS24693.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 575

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 105/230 (45%), Positives = 139/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL ++ L  + AI+REE 
Sbjct: 5   RLSQAFVPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRTLAKIEAIVREEM 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +P L  A++W ESGR++  G  M RL DR +     G THEE+ T I R  
Sbjct: 65  DAIGGQEFYLPALHPAEIWKESGRWEVMGDNMFRLKDRKNGDYCLGMTHEEIFTAIARDE 124

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +Y
Sbjct: 125 LRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDKSYEDQRRAY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF R GL  + ++A SG +GG  S EF+V  D GE  V          
Sbjct: 185 ERIFTRCGLDFVAVQAHSGAMGGSESSEFMVRTDAGEDLVAACPRCRYAA 234



 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 3/217 (1%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFY 289
           +   N D   +  +    +  T P+A  +++   +  +  P         + +EVGHIF 
Sbjct: 360 VTGANEDGFHLRGVEVRRDVLTGPHATVAELRTVRAGEGCPRCDGTLDVFKALEVGHIFK 419

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  M AT   ADGK   + MGSYGIG  R++AA IE  HD  GI WP ++APF+ 
Sbjct: 420 LGTKYSESMKATVLDADGKAVPIVMGSYGIGVERIMAAAIELHHDELGIRWPPAIAPFQA 479

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +++ +    +  + A +++   LS  G +V  DD  E+ G +F  ADL+G PL++ VG K
Sbjct: 480 TVLTLGPEPE-LKKAADELVKALSDAGLEVLHDDREERAGVKFKDADLVGIPLRISVGKK 538

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +++ KVE K R     E + L EV   A+      R
Sbjct: 539 GLAEGKVEWKLRGDKAVELVPLAEVARRAAEHVRAGR 575


>gi|163791590|ref|ZP_02185991.1| prolyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873139|gb|EDP67242.1| prolyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 568

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 103/240 (42%), Positives = 150/240 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SHK++LR G I Q S G+YS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSKLFIPTLRDVPNEAEVLSHKMLLRAGYIRQISSGVYSYLPLANRVIEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P+L   +LW ESGRY++YG ++++L DR+ +  + GPTHEE  T + R 
Sbjct: 61  FEKIDAVEMLMPSLLPRELWEESGRYETYGDDLMKLQDRHGRDYLLGPTHEEAFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE RPR G++R REF+MKDAYSF  + E    +Y     +
Sbjct: 121 EITSYKRLPLSLYQIQTKFRDEKRPRSGLLRGREFIMKDAYSFHDSYESLDETYLDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    +  ++G +GG  S EF+ ++D GE  +  S            T F 
Sbjct: 181 YTRIFERCGLDFRSIIGDAGAMGGSNSKEFMAISDIGEDTIVYSDSSDYSANLEMATSFH 240



 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 2/228 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH-NEKLFDSLPENKR 276
           E ++       D        + +    LN  +E+ +            E       +   
Sbjct: 341 EVKIIADVYVQDMVNAVAGANENGYHYLNVNLERDSKVETYIDLRFVQEGELSPDGQGVL 400

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
             A+GIE+GHIF  GT+YS  M+AT    +G+   V MG YGIG  R+++A+ E     +
Sbjct: 401 KFAKGIEIGHIFKLGTRYSEAMNATVLDNNGRSIPVVMGCYGIGVTRLLSAITEQQATEE 460

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP  ++PF++ L+ +            ++Y  L   G  V  DD  E++G +F  +D
Sbjct: 461 GLNWPRHLSPFELHLVPVNMKADDQVTLSNELYETLQHAGFSVLLDDRNERVGVKFKDSD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L+G P+++ VG K   ++ VE+K R TG   ++  +E+++  +   S+
Sbjct: 521 LIGLPIRITVGKK-AQENIVELKLRKTGEALEVRADELVDTLNILLSS 567


>gi|62897187|dbj|BAD96534.1| threonyl-tRNA synthetase-like 1 variant [Homo sapiens]
          Length = 718

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 158/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L + +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 286 LLRVWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 345

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 346 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 405

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 406 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 465

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 466 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 520

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 521 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 560

Query: 287 IFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G     V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 561 -FQLPLRF----DLQYKGQAGALGRPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 612

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q 
Sbjct: 613 PFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQF 669

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 670 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 710


>gi|124022453|ref|YP_001016760.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|152112941|sp|A2C7N5|SYP_PROM3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123962739|gb|ABM77495.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 599

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 111/227 (48%), Positives = 147/227 (64%), Gaps = 3/227 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I + + GIY++LPL  + L  + AI++EE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGYIRRVTSGIYAYLPLMWRVLRKITAIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWRRSGRWQGYTAGEGLMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF         +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHACEADLAMTYTAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S
Sbjct: 181 DEAYQRIFSRCGLETVAVEADSGAIGGASSQEFMVTADAGEDLILIS 227



 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 5/251 (1%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY-AA 258
           G +G DL    +  A +         D     +       +        +          
Sbjct: 346 GAMGPDLDDALLSEATSWTKHFLRLADPTATELNCFVCGANQNNQHRIGMTWSKLGEVPK 405

Query: 259 TSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           + D+   +  D    +        RGIEVGHIF  G KYS  + A F    G      MG
Sbjct: 406 SVDLRKSQAGDRCIHDSSQILEERRGIEVGHIFQLGRKYSEALEACFTNDKGTQEPFWMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+  A +E  HD  G+ WP ++APF++ ++     D+V +   E++Y+ L   
Sbjct: 466 CYGIGISRLAQAAVEQHHDEAGMNWPLAIAPFEVIIVVANIQDEVQQKLAEQLYSELQAA 525

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +V  DD  E+ G +F  ADL+G P +++VG +  +  +VE+  R +   E +S  +  
Sbjct: 526 DIEVLLDDRNERAGVKFKDADLIGIPWRIVVG-RDAAKGQVELIQRSSRKVEILSATQAF 584

Query: 436 NYASHRFSNNR 446
                  + N+
Sbjct: 585 TALVQEIAANQ 595


>gi|225548931|ref|ZP_03769908.1| threonyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225370534|gb|EEG99970.1| threonyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 581

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 163/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  +      + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSNPKAYLSTKP-----------------DKSVGNDYDWEMSLKVLEET 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P ++ +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ 
Sbjct: 494 --IVEDYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       M L+E + +   +  + 
Sbjct: 552 IRTRTNEQINGMKLDEALKFILFKIRDK 579


>gi|329936661|ref|ZP_08286368.1| prolyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329303891|gb|EGG47774.1| prolyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 564

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/230 (43%), Positives = 140/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + ++S GI+SWLPLG+K LDNV+ ++REE 
Sbjct: 6   RMSRLLVKTLRDDPADAETLSHKLLVRAGYVRRNSAGIWSWLPLGKKVLDNVSRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  S R++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASARWEEYGDLLFRLKDRKGGEYLLGPTHEEIFTLVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 VSSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAESYRLHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +IF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 186 QKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPNCDYAA 235



 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 6/179 (3%)

Query: 265 EKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P+        R IE+GHIF  G KY+        G +GK   V MGSYGIG  
Sbjct: 389 VEEGDPCPKCGTGLKLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVS 448

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R VAA+ E   D +G+ WP  +AP  + ++   A   +  +    +  +L+  G  V  D
Sbjct: 449 RAVAALAEQHADEQGLYWPKEIAPADVHVV--AAGKALQTELALDVSEKLAAAGVRVLVD 506

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +  G   G +F  A+L+G P  ++ G +   +  VE+K R TG RE++++EE I   + 
Sbjct: 507 ERSGVSPGVKFTDAELIGVPQILVAGRRS-GEGVVELKDRRTGEREELTVEEAIARLTA 564


>gi|15595065|ref|NP_212854.1| threonyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|218249246|ref|YP_002375218.1| threonyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|223889476|ref|ZP_03624062.1| threonyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|8928363|sp|O51662|SYT_BORBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701542|sp|B7J0G5|SYT_BORBZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2688663|gb|AAC67076.1| threonyl-tRNA synthetase (thrZ) [Borrelia burgdorferi B31]
 gi|218164434|gb|ACK74495.1| threonyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|223885162|gb|EEF56266.1| threonyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|312147875|gb|ADQ30534.1| threonyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 581

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 163/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  +      + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSNPKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEET 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P ++ +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ 
Sbjct: 494 --IVEDYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       M L+E + +   +  + 
Sbjct: 552 IRTRTNEQINGMKLDEALKFILFKIRDK 579


>gi|302537254|ref|ZP_07289596.1| prolyl-tRNA synthetase [Streptomyces sp. C]
 gi|302446149|gb|EFL17965.1| prolyl-tRNA synthetase [Streptomyces sp. C]
          Length = 570

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/230 (43%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P DAE  SH+L++R G + + S G+++WLPLG+K LDNV+ I+REE 
Sbjct: 13  RMSRLMAKTLREDPADAETLSHRLLVRAGYVRRSSAGVWTWLPLGKKVLDNVSRIVREEM 72

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 73  DAIGAQEVLLPALLPKEPYEVSGRWSEYGDLLFRLKDRKGADYLLGPTHEEIFTLVVKDQ 132

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD++ EG   SY     +Y
Sbjct: 133 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDVSDEGLAESYRLHREAY 192

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +RIF RLGL    + A SG +GG  S EF+  A  GE             
Sbjct: 193 VRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAGAGEDTFADCPSCDYAA 242



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-- 275
           E   + +   +                  ++V           DV   +  D  P     
Sbjct: 349 EKVRYLADPRVAPGTAWVTGANKADTHARNVVCGRDFEVDRYLDVVVVEPGDPCPACGAG 408

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D 
Sbjct: 409 LKLDRAIEIGHIFQLGRKYADAFGLDVLGKEGKPVRVTMGSYGIGVSRAVAALAEQTADE 468

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           +G+ WP +VAP  + ++   A   V     E+  A L+  G  V  DD  G   G +   
Sbjct: 469 RGLRWPAAVAPADVHVV--AAGKAVPLALAEEAAAALAAAGRRVLLDDRPGLSPGVKLTD 526

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           A+L+G P  ++ G +      VE++ R  G RE++ L E +   
Sbjct: 527 AELIGVPWILVAGRRSAE-GVVELQDRAAGTREELPLTEALARL 569


>gi|300933077|ref|ZP_07148333.1| prolyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 592

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 99/223 (44%), Positives = 140/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L  V  ++R E 
Sbjct: 4   RMSTLFLRTLRDDPADAEVPSHKLLVRAGYIRRAAPGVYSWLPLGLRVLRKVENVVRNEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+S P L   + +  +GR+  YG  +LRL DR     + GPTHEE+ T + +  
Sbjct: 64  DAIGAQELSFPALLPREPYETTGRWTEYGDALLRLKDRKGADYLLGPTHEEMFTSVVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+  EG + SY+K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQNKYRDEERPRAGILRGREFIMKDSYSFDMDDEGLERSYHKHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            +IF  LG++     A SG +GG  S EF+ +A+ GE     S
Sbjct: 184 QKIFDTLGVQYAICAATSGAMGGSASEEFLAVAENGEDTFVRS 226



 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 5/182 (2%)

Query: 264 NEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             K  D  P+ K     ARGIE+GHIF  G KY+          +GK     MGSYGIG 
Sbjct: 411 EVKEGDPSPDGKGALTLARGIEIGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSYGIGV 470

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+VA + E  HD  G+ WP +VAP+ + ++ I   D    +A EK+   LS  G DV  
Sbjct: 471 SRLVAVLAEQMHDEYGLRWPVAVAPYDVHVV-IANKDAAAAEAAEKLTTELSSTGLDVLI 529

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           DD  +   G +F  ++LLG PL V+VG +  ++ KVE+++RL+G + +++ E+ ++    
Sbjct: 530 DDRPKVSPGVKFKDSELLGMPLVVVVG-RGFAEGKVELRNRLSGDKLEVAYEDAVSAVQQ 588

Query: 441 RF 442
           + 
Sbjct: 589 QL 590


>gi|78185232|ref|YP_377667.1| prolyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|114152270|sp|Q3AWR9|SYP_SYNS9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78169526|gb|ABB26623.1| Prolyl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 593

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 145/237 (61%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEIASH+L+LR G I +   GIY +LPL  K +  + AI+R+E
Sbjct: 1   MRVSRLLLVTLRDVPAEAEIASHQLLLRGGYIRRIGSGIYGYLPLMWKVIQRITAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P L  A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNTAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF       +++Y +M
Sbjct: 121 AGELLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEADLQNTYLEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D        
Sbjct: 181 DQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDDGTYAANQE 237



 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 9/258 (3%)

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L  I    + G +    S     L  T  T     +       P ++  +     L    
Sbjct: 345 LGFIGPDLDDGVLRSARSWTKQFLRCTDSTAAAMDRMVCGANQPDQHRLYATWADLGGAP 404

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +      A        +     PE   +  RGIEVGHIF  G KYS  M + F    GK 
Sbjct: 405 KSLDLRKA-----RAGEACVHNPEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTNEAGKT 459

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +  MG YGIG  R+  A +E  HD  GI WP ++AP++  ++     DQ   +  E +Y
Sbjct: 460 EHFWMGCYGIGISRLAQAAVEQHHDDAGICWPAAIAPYEAIVVVANMQDQTQAELGESLY 519

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G D  +DD  E+ G +F  ADL+G P +V+VG +  SD  VE+  R     + +
Sbjct: 520 KQLLAAGVDALFDDRKERAGVKFKDADLIGIPWRVVVG-RDASDGVVELVERANRAVQKL 578

Query: 430 SLEEVINYASHRFSNNRP 447
              +            RP
Sbjct: 579 PHADA---LKELLRTLRP 593


>gi|326776245|ref|ZP_08235510.1| prolyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|326656578|gb|EGE41424.1| prolyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 567

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/230 (43%), Positives = 140/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           ++IF RLGL    + A SG +GG  S EF+  A  GE             
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGEDTFADCPHCDYAA 235



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 6/182 (3%)

Query: 265 EKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P+     V  R IE+GHIF  G KY+        G  GK   V MGSYGIG  
Sbjct: 389 VEEGDPCPKCGTGLVLDRAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVS 448

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R VAA+ E + D KG+ WP  +AP  + ++   A   +  +    +  +L+  G  V  D
Sbjct: 449 RAVAALTEQTADDKGLCWPREIAPADVHVV--AAGKALQTELALDVSEKLNAAGLRVLVD 506

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G   G +F  ++L+G P  ++ G +  +D  +E+K R TG RE+++++E I   +  
Sbjct: 507 DRPGVSPGVKFTDSELIGVPKILVAGRRS-ADGVLELKDRRTGEREELTVDEAIARLTAD 565

Query: 442 FS 443
            +
Sbjct: 566 LA 567


>gi|331701343|ref|YP_004398302.1| Prolyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128686|gb|AEB73239.1| Prolyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 569

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 147/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P+ AE  SH++++R G I Q S G+Y++LPL  + L+ +  IIR+E
Sbjct: 1   MKQSQMLIPTLKETPKGAEALSHQMLVRGGYIRQISAGMYAYLPLAYRVLNKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  ADLW ESGRYD+YG E+ +  +R++   I GPTHEE  T + R 
Sbjct: 61  MEKTSAHEMLMPDILPADLWKESGRYDTYGPELFKFKNRHETDFILGPTHEETFTALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF    E    +YN M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDENRPRYGLLRSREFIMKDAYSFATNDEDLDKTYNAMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S +   F 
Sbjct: 181 YRNIFDRIGLKYKVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSDESDYFA 231



 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 3/220 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  +  + ++   +  + + +    +             EK  D     K    RGIE+
Sbjct: 351 ANMKNAVVGADENGYHYVNANSDRDFRIDDVDDFVVVKEGEKTPDGKGTLKFT--RGIEI 408

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E + D  G++WP +V
Sbjct: 409 GHIFKLGTRYSKSLKANVLDENGRAVPVIMGSYGIGVSRLLSAISEQNADENGLVWPKAV 468

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APF + +I I A   V  D   +I A+L+     V  DD  E+ G +FA +DL+G PL+V
Sbjct: 469 APFDVHVIPINAKKAVQMDLAHQIEAQLTADQLQVLVDDRKERAGVKFADSDLMGIPLRV 528

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +G K   +  VEIK R TG   ++++ E+ +       N
Sbjct: 529 TIGKK-AEEGIVEIKIRKTGETVEVNVTELSDTIKKMLKN 567


>gi|168702447|ref|ZP_02734724.1| threonyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 620

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 72/450 (16%), Positives = 153/450 (34%), Gaps = 39/450 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L          G    LP G      +   I + + R G 
Sbjct: 198 LARLEEAAKRDHRKVGRELDLFANEPVF-GSGFPMLLPKGATIRRLLETFITDYERRAGY 256

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-----NDKAMIYGPTHEEVMTDIFRSH 121
           + +  P +   +L+  SG +D Y   M    D      +D+ +   P        +++S 
Sbjct: 257 LHVFTPDIAKKELYKISGHWDHYKDSMFPPMDMGEGGNDDEELCLRPMCCPHHIQVYKSK 316

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    ++   +R E     G + R R   + DA+ F + P+  KH    +   
Sbjct: 317 ARSYRDLPIRIAELGNMYRFERSGVVGGLSRVRCMTLNDAHLF-VRPDQVKHEIAGVLQL 375

Query: 181 YLRIFHRLGLKSIPMRAESGPIG-GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +  LG+     R        G  S +++      E+    S   +   +      F
Sbjct: 376 MKKAYADLGITEYRFRLSKNADPDGPPSDKYVDNPAMWES----STKMLREVLQESGMPF 431

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +               A      + ++ D +   + +S    +     +   K+     
Sbjct: 432 FEAW----------NEAAFYGPKIDVQVKDVMGREETLSTIQAD----QHLPAKF----E 473

Query: 300 ATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +K +D       M   G+ +    + + +   + G   +W   +AP +++++ I    
Sbjct: 474 LEYKDSDDTPKRPVMIHRGVISTMERMMSYLIELYAGAFPVW---LAPVQVAIVPIA--- 527

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +K+   L      V  D   +++ ++   A L   P  +++G K +  + V +
Sbjct: 528 DRHFAFAQKLGDELLDKDYRVDVDLGDKRMQAKIRDAQLQKIPYILVIGDKEMEANAVAV 587

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + R           E +       + +R +
Sbjct: 588 RLRDGTDLGAKPAAEFVAML-EAVAKSRTL 616


>gi|116617800|ref|YP_818171.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271999|sp|Q03YC4|SYP_LEUMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116096647|gb|ABJ61798.1| Prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 572

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 103/241 (42%), Positives = 148/241 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L++ P +AE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLRDIPAEAEVKSHQLLLKAGYIRPIAAGMFSYLPLAKRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A EM VP +  A+LW  SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDKIDANEMLVPEVLPAELWQRSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLIAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDEAFHNMEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   +  ++G +GG  S EF   A  GE  +  S             DF 
Sbjct: 181 YTNIFDRLGLEYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSDATDYAANLEMAKDFY 240

Query: 241 D 241
           +
Sbjct: 241 E 241



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 3/211 (1%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +              +   + +I     +           +    +   D     K   
Sbjct: 347 DERAADLANFAAGANEDGMHYVNINWNRDVDLLAENVSDFRTVREGDLAIDGKG--KLQF 404

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
             GIE+GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E   D  G+
Sbjct: 405 TSGIEIGHIFKLGTRYSKTLGAQVLDNNGRQTDVIMGSYGIGVSRLLSAIAEQKADEDGL 464

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF I ++ I   D+      E++   L   G +V  DD  E+ G +FA ADL+
Sbjct: 465 VWPASVAPFDIHIVPINMKDEDQARVAEQLETLLVAQGMEVLVDDRKERAGVKFADADLI 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G P+++ VG K   +  VE+K R +    +M
Sbjct: 525 GLPIRITVGKK-ADEDVVEVKVRASNTNIEM 554


>gi|170016922|ref|YP_001727841.1| threonyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|238688955|sp|B1MXZ5|SYT_LEUCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169803779|gb|ACA82397.1| Threonyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 653

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 157/441 (35%), Gaps = 39/441 (8%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +A+   H+ + R   +     +   G+  WLP G      V   I +++   G   +  P
Sbjct: 241 EAKERDHRTIGRDMDLFFTSQEVGSGLPVWLPNGATIRRQVERYIIDKELANGYQHVYTP 300

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + +L+  SG +D Y ++M    D    + +   P +      +F    +SYR LP  
Sbjct: 301 VLSNLNLYKTSGHWDHYREDMFPPMDMGEGEFLELRPMNCPSHIMVFNHKPRSYRELPIR 360

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E      G+ R RE  + D ++F + PE  +  +  +    + ++    +
Sbjct: 361 IAELGMMHRYEKSGALTGLSRVREMTLNDGHTF-VEPEKLEEEFKSILTMMMGVYRDFNI 419

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                  D   T+ +   D M     ++     D + L+    
Sbjct: 420 TDYRFRLSYR--------------DPENTEKYFDDDDMWEKSQAQLKRAMDDLKLD--YY 463

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-- 308
           +     A      + +   +L   + +S   ++    F    +++L    T+ GADG+  
Sbjct: 464 EAEGEAAFYGPKLDVQTKTALGSEETMSTIQLD----FLLPERFNL----TYIGADGQDN 515

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    +G M    A +   + G    W   ++P ++ +I +        D    I
Sbjct: 516 HRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHGDYANDI 570

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L   G     +    ++G     A     P  +++G   V    V ++         
Sbjct: 571 QAQLQAAGLRAHVETKDAKMGYLIREAQTNKIPYTLVLGDSEVDGQTVTVRKYGEEKTRT 630

Query: 429 MSLEEVINYASHRFSN-NRPV 448
           M   +  +      +N +RPV
Sbjct: 631 MRFADFQSEILADVANYSRPV 651


>gi|282916523|ref|ZP_06324281.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770327|ref|ZP_06343219.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319010|gb|EFB49362.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460474|gb|EFC07564.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 567

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|49486102|ref|YP_043323.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81175024|sp|Q6G9V0|SYP_STAAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49244545|emb|CAG42974.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 567

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 112/265 (42%), Positives = 167/265 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+        +     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAANIEKAEVVY 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           +     S V+              E
Sbjct: 241 EPNHKYSTVQPLEKIETPNVKTAQE 265



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|258452562|ref|ZP_05700568.1| prolyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257859780|gb|EEV82622.1| prolyl-tRNA synthetase [Staphylococcus aureus A5948]
          Length = 567

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|116072890|ref|ZP_01470155.1| prolyl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116064416|gb|EAU70177.1| prolyl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 593

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 146/237 (61%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEIASH+L+LR G I +   GIY +LPL  K +  + AI+R+E
Sbjct: 1   MRVSRLLLVTLRDVPAEAEIASHQLLLRGGYIRRVGSGIYGYLPLMWKVIQRITAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P L  A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNKAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF  +    +++Y  M
Sbjct: 121 AGDLLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRNTYLDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D        
Sbjct: 181 DQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDDGTYAANQE 237



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 116/263 (44%), Gaps = 12/263 (4%)

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF----MDFPIPSENTDFDDIIS 244
           G+ +IP+    G IG DL+   +  A +   Q     D     MD  I   N      IS
Sbjct: 339 GIDTIPL----GFIGPDLNDAVLRSARSWTKQFLRCTDGTAAAMDRMICGANQTDQHRIS 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +       T            +     PE   +  RGIEVGHIF  G KYS  M + F  
Sbjct: 395 VTWDDLGGTPKSLDLRKARAGEACVHNPEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTN 454

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK  +  MG YGIG  R+  A +E  HD  GI WP ++AP++  ++     DQ   + 
Sbjct: 455 EAGKTEHFWMGCYGIGISRLAQAAVEQHHDDAGICWPPAIAPYEAIVVVANMQDQTQAEL 514

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +Y +L   G D  +DD  E+ G +F  ADL+G P +V+VG +   D  VE+  R   
Sbjct: 515 GESLYEQLLAAGVDALFDDRKERAGVKFKDADLIGIPWRVVVG-RDAGDGVVELVERANR 573

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
             + +   + +N      S  RP
Sbjct: 574 GVQKLPHADALN---ELLSTLRP 593


>gi|239944683|ref|ZP_04696620.1| prolyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239991146|ref|ZP_04711810.1| prolyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291448145|ref|ZP_06587535.1| prolyl-tRNA synthetase 1 [Streptomyces roseosporus NRRL 15998]
 gi|291351092|gb|EFE77996.1| prolyl-tRNA synthetase 1 [Streptomyces roseosporus NRRL 15998]
          Length = 567

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 100/230 (43%), Positives = 141/230 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI++WLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWTWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           ++IF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGEDTFADCPNCDYAA 235



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 6/182 (3%)

Query: 265 EKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P+     V  R IE+GHIF  G KY+        G  GK   V MGSYGIG  
Sbjct: 389 VEEGDPCPKCGTGLVLDRAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVS 448

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R VAA+ E + D KG+ WP  +AP  + ++   A   +  +    +  +L+  G  V  D
Sbjct: 449 RAVAALTEQTADDKGLCWPREIAPADVHVV--AAGKALQTELALDVSEKLNAAGLRVLVD 506

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G   G +F  ++L+G P  ++ G +  +D  +E+K R TG RE+++++E I   +  
Sbjct: 507 DRAGVSPGVKFTDSELIGVPKILVAGRRS-ADGVLELKDRRTGEREELTVDEAIARLTAD 565

Query: 442 FS 443
            +
Sbjct: 566 LA 567


>gi|224531616|ref|ZP_03672248.1| threonyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511081|gb|EEF81487.1| threonyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 581

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 165/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEVGPGLVFFHPNGAKIRSLIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVVDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++++ G  S+     + P     +      AD   +     +   DF +P     
Sbjct: 346 RFAIYMWNKFGFNSLKAYLSTKPDKSVGND-----ADWEMSLKVLEETLSDFEVP----- 395

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                      E      A      + K+ DSL    ++S    +    F    ++++  
Sbjct: 396 ----------YEIDKGGGAFYGPKIDLKIVDSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P +  +I +   
Sbjct: 440 --TYTADDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQAVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+  +    G  +  D+   ++ ++         P   I+G + V++ ++ 
Sbjct: 494 --TVEDYAIKVLNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREVAEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L E + +   +  N 
Sbjct: 552 IRTRTNEQINGIELNEALKFILLKIRNK 579


>gi|57651833|ref|YP_186139.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|81175020|sp|Q5HGG8|SYP_STAAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57286019|gb|AAW38113.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
          Length = 567

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|298694555|gb|ADI97777.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 567

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|229820980|ref|YP_002882506.1| prolyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566893|gb|ACQ80744.1| prolyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 586

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 146/255 (57%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L  V AI+REE +
Sbjct: 1   MSRLFLRTLREDPVDAEVDSHRLLVRAGYIRRAAPGIYTWLPLGLRVLARVEAIVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  SGR+ +YG+ + RL DR +   +  PTHEE+ T + +   
Sbjct: 61  AAGAQEVHFPALLPREPYEASGRWTTYGQGIFRLKDRREGDYLLAPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+     + SY+    +Y 
Sbjct: 121 SSYKDLPLTLYQIQTKYRDEARPRAGLLRGREFIMKDAYSFDVDLARFERSYDAQRHAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLGL+ + ++A SG +GG  S EF+     GE     S       + +  T   + 
Sbjct: 181 RIFDRLGLEYVIVKASSGLMGGTRSEEFLSPCAIGEDTFVRSPGGYAANVEAVTTPVPEA 240

Query: 243 ISLNSIVEQWTAPYA 257
           I              
Sbjct: 241 IPYEDAPPAHVEDTP 255



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT +S  +  T    +GK     MGSYG+G  R VAA+ E+ HD +G+ 
Sbjct: 419 RGIEIGHIFDLGTTFSDALGLTVLDENGKAIVPTMGSYGVGVSRAVAALAETHHDERGLT 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP ++ ++     D     A E++ A L+    DV  DD  +   G +FA  +LL
Sbjct: 479 WPVHVAPAQVHIVA-TGKDDAVFAAAEELGAALTARRIDVLLDDRRKVSAGVKFADGELL 537

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+ V+VG + ++D  +E++ R + +RED+ +    ++ +   
Sbjct: 538 GMPVIVVVG-RGLADGTIEVRLRASDLREDVEVARAADHVAELV 580


>gi|87161679|ref|YP_493853.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194973|ref|YP_499773.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221385|ref|YP_001332207.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509429|ref|YP_001575088.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142497|ref|ZP_03566990.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262048155|ref|ZP_06021042.1| prolyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262051325|ref|ZP_06023548.1| prolyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282920507|ref|ZP_06328228.1| prolyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|284024256|ref|ZP_06378654.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|294848259|ref|ZP_06789006.1| prolyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|304381173|ref|ZP_07363826.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|114152254|sp|Q2FHH5|SYP_STAA3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152255|sp|Q2G1Z4|SYP_STAA8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172049021|sp|A6QGG3|SYP_STAAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083518|sp|A8Z3U3|SYP_STAAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87127653|gb|ABD22167.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202531|gb|ABD30341.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374185|dbj|BAF67445.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368238|gb|ABX29209.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259160700|gb|EEW45721.1| prolyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|259163721|gb|EEW48276.1| prolyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|282594169|gb|EFB99156.1| prolyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|294825059|gb|EFG41481.1| prolyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|302751086|gb|ADL65263.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340156|gb|EFM06097.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198505|gb|EFU28834.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140920|gb|EFW32767.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144364|gb|EFW36130.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313933|gb|AEB88346.1| Prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
 gi|329727831|gb|EGG64282.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 567

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|329945633|ref|ZP_08293366.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528636|gb|EGF55601.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 683

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 74/454 (16%), Positives = 144/454 (31%), Gaps = 44/454 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +   + +     G
Sbjct: 248 YQTRLAEAAKRDHRKLGAELDLYS-FPEEIGPGLVVFHPKGAMLRHQIEQYVVDRHQDYG 306

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRN----------DKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M      D             +       +  +
Sbjct: 307 FDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLADEERDGQGNITKAGQEYYLKAMNCPM 366

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  TPE +  
Sbjct: 367 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQAGE 425

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                   +L I    GL    +   +    G             +   F   D      
Sbjct: 426 EIRAQIDFFLSILKAFGLTDFYLELSTRDEDG------------AKKDKFIGSDADWAAA 473

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                D  D   L  + +      A      + ++ D++    ++S    +         
Sbjct: 474 TRALQDACDASGLEVVPD--PGGAAFYGPKVSVQVKDAIGRTWQMSTIQYDFNQPER--- 528

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG     + + S  +G++     V+   + G    W   ++P ++ L
Sbjct: 529 -----FDLEYTAADGTHQRPIMIHSAKLGSVERFIGVLTEHYAGAFPTW---LSPVQVRL 580

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +    +   D  + + A+L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 581 IPVA---EAFDDYVDDVAAQLRAQGVRVEVDHSDDRFGKKIRNASKDKIPFTLIAGGEDA 637

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               V  + R       ++++E + +        
Sbjct: 638 EAGAVSFRFRDGEQTNGVAVKEAVAHIVSVIDAR 671


>gi|309811510|ref|ZP_07705292.1| proline--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308434561|gb|EFP58411.1| proline--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 587

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 102/233 (43%), Positives = 144/233 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+  HKL++R G I + + G+Y+WLPLG K L NV  I+REE 
Sbjct: 4   RMSNLFLRTLREDPADAELPGHKLLVRAGYIRRAAPGVYTWLPLGLKVLRNVETIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L   + +  + R+D YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  EAIGAQELSFPALLPREPYEATNRWDEYGPNLFRLQDRKGVDMLLGPTHEEMFTITVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +QIQ K+RDE RPR G++R REF+MKD+YSFD T +G + SY K   +Y
Sbjct: 124 FSSYKDLPTTLFQIQTKYRDEARPRAGLLRGREFIMKDSYSFDHTKQGLEESYAKHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           ++IF RLG + + + A+SG +GG  S EF+ ++  GE     S       + +
Sbjct: 184 VKIFDRLGFEYVVVHADSGAMGGSASEEFLAVSRHGEDTFVRSPGGFAANVEA 236



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 3/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GTKY+  +       +GK   V MGSYGIG  R VAA+ E + D KG+I
Sbjct: 423 RGIEMGHIFQLGTKYAEALGLKVLDENGKLVTVTMGSYGIGVSRAVAAIAEDNLDDKGLI 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +APF + ++     D    +  E++ A L   G  V +DD  +   G +F  A+L+
Sbjct: 483 WPRHIAPFDVHVVA-TGKDAAVFEKAEQVVADLESAGLGVLFDDRPKVSPGVKFKDAELI 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  V++G + +SD  +E+K R +G   D+ ++EV         
Sbjct: 542 GVPTIVVLG-RGLSDGTIEVKDRRSGTSRDVGVDEVAAEVLSEVR 585


>gi|15924253|ref|NP_371787.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926846|ref|NP_374379.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|21282875|ref|NP_645963.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|148267753|ref|YP_001246696.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393812|ref|YP_001316487.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979584|ref|YP_001441843.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315619|ref|ZP_04838832.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733499|ref|ZP_04867664.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006050|ref|ZP_05144651.2| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795681|ref|ZP_05644660.1| prolyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258416084|ref|ZP_05682352.1| prolyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258421667|ref|ZP_05684591.1| prolyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258434823|ref|ZP_05688897.1| prolyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258444601|ref|ZP_05692930.1| prolyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258447566|ref|ZP_05695710.1| prolyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258449408|ref|ZP_05697511.1| prolyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258454787|ref|ZP_05702751.1| prolyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|269202880|ref|YP_003282149.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282892751|ref|ZP_06300986.1| prolyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|295406200|ref|ZP_06816007.1| prolyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296274821|ref|ZP_06857328.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297208091|ref|ZP_06924522.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297244428|ref|ZP_06928311.1| prolyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|300912172|ref|ZP_07129615.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81175021|sp|Q99UK9|SYP_STAAM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175022|sp|Q7A5Y3|SYP_STAAN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175025|sp|Q7A120|SYP_STAAW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980161|sp|A7X1P3|SYP_STAA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083516|sp|A6U182|SYP_STAA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083517|sp|A5ISE7|SYP_STAA9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13701063|dbj|BAB42358.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus N315]
 gi|14247033|dbj|BAB57425.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204314|dbj|BAB95011.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|147740822|gb|ABQ49120.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946264|gb|ABR52200.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721719|dbj|BAF78136.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253728553|gb|EES97282.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789653|gb|EEV27993.1| prolyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257839232|gb|EEV63708.1| prolyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257842353|gb|EEV66778.1| prolyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257849184|gb|EEV73166.1| prolyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257850094|gb|EEV74047.1| prolyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257853757|gb|EEV76716.1| prolyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257857396|gb|EEV80294.1| prolyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257863170|gb|EEV85934.1| prolyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262075170|gb|ACY11143.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282764748|gb|EFC04873.1| prolyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|285816945|gb|ADC37432.1| Prolyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|294968788|gb|EFG44810.1| prolyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296887334|gb|EFH26236.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178458|gb|EFH37704.1| prolyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|300886418|gb|EFK81620.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312829657|emb|CBX34499.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315131057|gb|EFT87041.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727670|gb|EGG64126.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 567

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|300780959|ref|ZP_07090813.1| proline--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532666|gb|EFK53727.1| proline--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 611

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 104/223 (46%), Positives = 139/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG KA+ N+  I+REE 
Sbjct: 17  RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYSWLPLGLKAVRNIEEIVREEM 76

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R+  YG ++ RL DR    M+ GPTHEE+ T   +  
Sbjct: 77  NAIGAQELLFPALLPREPYEATNRWTEYGDDLFRLQDRKGTDMLLGPTHEEMFTLAVKDL 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG   SY     +Y
Sbjct: 137 YSSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDMTDEGLSESYAAHRRAY 196

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             IF R+GLK    +A SG +GG  S EF+  +D GE     S
Sbjct: 197 QAIFDRVGLKYEICQATSGAMGGSASEEFLAYSDNGEDTFVVS 239



 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 6/181 (3%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ARGIE+GHIF  G KY+  M       +GK     MGSYGIG  R++A + 
Sbjct: 433 PTGNGTLRLARGIELGHIFQLGRKYTEAMDVQILDENGKRAVPTMGSYGIGVTRMLAVIA 492

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E  HD KG++WP  +AP+++ L  +   D    +A E++       G DV  DD  +   
Sbjct: 493 EQLHDDKGLVWPVEIAPYQVHL-AVANKDAAAMEASERLVGEFEAAGIDVLVDDRPKVSP 551

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYASHRFSNN 445
           G +F  A+LLG P  VI+G +  +D  +E++ R     G   ++  +E+++      +  
Sbjct: 552 GVKFKDAELLGMPFIVILG-RSFADGIIELRIRGGENGGEILEVPADEIVSRVQELIAAA 610

Query: 446 R 446
           R
Sbjct: 611 R 611


>gi|319941771|ref|ZP_08016093.1| prolyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804704|gb|EFW01571.1| prolyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 582

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 109/224 (48%), Positives = 155/224 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR   +F+  L+E P DA++ S + M+R+GMI + + G+Y+++PLG + +  +  IIR+E
Sbjct: 1   MRARSFFISTLKEAPADADVISQQYMIRSGMIKKLAAGVYTYMPLGLRVIRKIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+IE+ +P +Q A+LW E+GR++ YG E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MVRAGSIELLMPMVQPAELWQETGRWEKYGPELLRIKDRHMRDFVLQPTSEEVITDVARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  F+ IQ KFRDE RPRFGVMR REF MKDAYSFD    G+  SY+KM+ +
Sbjct: 121 EIKSWRQLPVNFFHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAGAGLSYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RIF R+GL    +RA++G IGG  SHEF V+A+ GE  +   
Sbjct: 181 YQRIFTRIGLVFRAVRADTGSIGGSRSHEFQVIANAGEDVIAYC 224



 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 4/207 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
              + +      P     D+ N    D  P+ K      RGIEVGH+F+ GT+YS PM A
Sbjct: 376 FHYSGVNFGRDLPEPVVMDLRNVVEGDKSPDGKGVLRLQRGIEVGHVFFLGTRYSEPMHA 435

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQ 359
           TF   +G+   +QMG YGIG  RV  A IE  HD KGI WPD++APF++ +  +  A  +
Sbjct: 436 TFLDENGQPKPMQMGCYGIGVTRVAGAAIEQRHDDKGIQWPDAIAPFEVVICPMNYAKSE 495

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             R A + +Y  L   G DV  DD   + G  FA  +L+G P +V++G + + + ++E  
Sbjct: 496 DVRKAADALYEDLKARGVDVILDDRDMRPGVMFAEWELIGVPHRVVIGDRGLKNGEIEYA 555

Query: 420 HRLTG-IREDMSLEEVINYASHRFSNN 445
            R     +  + + +   +   R   +
Sbjct: 556 ERTNLAEKTMVPVADAAAFIVGRIKRD 582


>gi|323339428|ref|ZP_08079710.1| proline--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323093139|gb|EFZ35729.1| proline--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 572

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 104/231 (45%), Positives = 146/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+LMLR G I Q + G+Y++LPL  + L N+ AIIREE
Sbjct: 1   MKQSKLLIPTLKEVPSDAEAISHQLMLRGGYIKQITAGMYAYLPLAYRVLRNIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A EM VP    A+LW ++GRY++YG  + +  DR+++  I GPTHEE  T I R 
Sbjct: 61  MENIDAAEMLVPAALPAELWQQTGRYETYGPNLFKFQDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ K+RDE RPRFG++R REF+MKDAYSF    E    ++  M  +
Sbjct: 121 AVKTYKKLPITLYQIQTKYRDENRPRFGLLRGREFIMKDAYSFHAEEESLDKTFRDMDSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F+R+GL    +  ++G +GG+ S EF+ +A  GE  V  S +     
Sbjct: 181 YTNVFNRVGLNFRSIIGDAGAMGGNNSKEFMAIAPIGEDTVVYSDESDYAA 231



 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 117/248 (47%), Gaps = 11/248 (4%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GP+G  +S E  +LAD         ++  +  + +    F  + +        T    
Sbjct: 332 SLGPVG--VSEEIEILAD------LDVENMANASVGANEDGFHYLNANLGRDFSVTHFAD 383

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +    E   D     K    RGIE+GHIF  GT+YS  + A     +G+   + MG Y
Sbjct: 384 LRTVQEGEISPDGKGRLKFT--RGIEIGHIFKLGTRYSKDLDAVVLDENGRQLPIIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  GI+WP S+APF + +I +    +   +  EK+   L   G 
Sbjct: 442 GIGVSRLLSAIVEQHSDENGIVWPRSIAPFDVHVIPVNVKKEEQVELSEKVTELLENAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +FA +DL+G P ++ VG K  ++  VEIK R TG   ++ L+E++N 
Sbjct: 502 KVLVDDRKERPGVKFADSDLIGIPARITVGKK-AAEGIVEIKLRRTGETLEVKLDELLNS 560

Query: 438 ASHRFSNN 445
                   
Sbjct: 561 LQILLKEE 568


>gi|329733665|gb|EGG69993.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 567

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|293189858|ref|ZP_06608572.1| proline--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292821273|gb|EFF80218.1| proline--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 602

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 99/232 (42%), Positives = 139/232 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +
Sbjct: 5   LSTFFLRTLREDPADAEVNSHKLLVRAGYIRRSAPGIYTWLPLGLRTLRKIEDIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +   
Sbjct: 65  AMGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLNDRKGGDYLLAPTHEEMFTLLVKDMY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY     +Y 
Sbjct: 125 SSYKDLPATLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDDEGLNASYQAERDTYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RLGL+ + + A SG +GG  S EF+  +  GE     S         +
Sbjct: 185 RIFQRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVASPGGYAANAEA 236



 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 3/178 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              RGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV
Sbjct: 419 EGDLAPDGSGPLHLERGIEIGHIFQLGRKYAKALGLTVLDENGKTQVVTMGSYGIGVTRV 478

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA+ E++ D KG+ WP  +APF + ++     D+V  +  + +   L   G DV  DD 
Sbjct: 479 MAALAEANCDDKGLSWPAQIAPFDVHVLATGKGDEVF-ETAQSLGEELDAAGLDVLVDDR 537

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +   G +F   +L+G P  ++VG + ++DS+VEI+ R TG    + +EE +      
Sbjct: 538 RKVSAGVKFKDYELVGVPFGLVVG-RSLADSEVEIRVRATGETIVLPVEEAVARLREL 594


>gi|114559277|ref|XP_001168750.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 2 [Pan
           troglodytes]
          Length = 635

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 158/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 203 LLRAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 262

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 263 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 322

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 323 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 382

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 383 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 437

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 438 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 477

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 478 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 529

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q 
Sbjct: 530 PFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQF 586

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 587 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 627


>gi|169630222|ref|YP_001703871.1| prolyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|226701313|sp|B1MD96|SYP_MYCA9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169242189|emb|CAM63217.1| Prolyl-tRNA synthetase ProS [Mycobacterium abscessus]
          Length = 580

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 135/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+++P DAE+ SHKL++R G +   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RLSELFVRTLRDDPADAEVPSHKLLIRAGYVRPVAPGVYSWLPLGLRVLRKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L     +  + R+  YG  + RL DR D  M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRAPYETTNRWTEYGDSLFRLKDRRDNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQ+Q K+RDE RPR G++R REF+MKD+YSFD + +G K +Y+    +Y
Sbjct: 124 YSSYKDFPVILYQVQTKYRDEARPRAGILRGREFVMKDSYSFDTSDDGLKAAYHAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLGL  + + A SG +GG  S EF+  + TGE      
Sbjct: 184 QRIFGRLGLDYVIVAATSGAMGGSASEEFLAESPTGEDTFVRC 226



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 2/173 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + VSARGIE+GHIF  G KY+   +    G +GK   +  GSYGIG  R+VA V 
Sbjct: 409 PDGAGQLVSARGIEIGHIFQLGRKYTDAFTVDVLGENGKPVRLTQGSYGIGVSRLVAVVA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD  G+ WP +V+PF + ++ I   D   R   E++ A L ++G +V  DD     G
Sbjct: 469 EQQHDELGLRWPSAVSPFDVHVV-IANKDDAARAGAEELAAELDRLGHEVLLDDRTASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +F  A+LLG P  V++G +  +D  +E+++R TG  + +++ + +   +   
Sbjct: 528 VKFKDAELLGVPWIVVIG-RGWADGTIELRNRFTGETQPIAVTDAVASVTQAI 579


>gi|154509145|ref|ZP_02044787.1| hypothetical protein ACTODO_01666 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798779|gb|EDN81199.1| hypothetical protein ACTODO_01666 [Actinomyces odontolyticus ATCC
           17982]
          Length = 602

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 99/232 (42%), Positives = 139/232 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +
Sbjct: 5   LSTFFLRTLREDPADAEVNSHKLLVRAGYIRRSAPGIYTWLPLGLRTLRKIEDIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +   
Sbjct: 65  AMGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLNDRKGGDYLLAPTHEEMFTLLVKDMY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY     +Y 
Sbjct: 125 SSYKDLPATLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDDEGLNASYQAERDTYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RLGL+ + + A SG +GG  S EF+  +  GE     S         +
Sbjct: 185 RIFQRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVASPGGYAANAEA 236



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 3/178 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              RGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV
Sbjct: 419 EGDLAPDGSGPLHLERGIEIGHIFQLGRKYAKALGLTVLDENGKTQVVTMGSYGIGVTRV 478

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA+ E++ D KG+ WP  +APF + ++     D+V  +  + +   L   G DV  DD 
Sbjct: 479 MAALAEANCDDKGLSWPAQIAPFDVHVLATGKGDEVF-ETAQSLGEELDAAGLDVLVDDR 537

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +   G +F   +L+G P  ++VG + ++D  VEI+ R TG    + +EE +      
Sbjct: 538 RKVSAGVKFKDYELVGVPFGLVVG-RSLADGDVEIRVRGTGETIVVPVEEAVARLREL 594


>gi|269940754|emb|CBI49136.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
          Length = 567

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|315604524|ref|ZP_07879587.1| proline--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313536|gb|EFU61590.1| proline--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 602

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 160/316 (50%), Gaps = 9/316 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +
Sbjct: 5   LSTFFLRTLREDPADAEVNSHKLLVRAGYIRRTAPGIYTWLPLGLRTLRKIEDIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +   
Sbjct: 65  AMGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLEDRKGGDYLLAPTHEEMFTLLVKDMF 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+T  G   SY     +Y 
Sbjct: 125 SSYKDLPTTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVTEVGLDASYQAERDTYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLGL+ + + A SG +GG  S EF+  +  GE     S         +  T   D 
Sbjct: 185 RIFTRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVASPGGYAANAEAVTTVAPDA 244

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +  + +      P         E L D L        R  +              +  T 
Sbjct: 245 VDASGVPSPLEVPTP--DAPTIESLVDLLNAEHPREDRPWQAADTL-------KNVVLTL 295

Query: 303 KGADGKDHYVQMGSYG 318
              DGK   + +G  G
Sbjct: 296 THPDGKRELLVVGIPG 311



 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 3/167 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIE+GHIF  G KY+  +  T     GK   V MGSYGIG  RV+AA+ E++ D 
Sbjct: 430 LHLERGIEIGHIFQLGRKYAQALGLTVLDECGKTQVVTMGSYGIGVTRVMAALAEANCDE 489

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           +G+ WP  +APF + ++     ++V   A   +   L   G DV  DD  +   G +F  
Sbjct: 490 RGLSWPAQIAPFDVHVLATGKGEEVFATAA-SLGDELDVAGLDVLVDDRRKVSAGVKFKD 548

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +L+G P  ++VG + ++D KVEI+ R TG    + +EE        
Sbjct: 549 FELVGIPFGLVVG-RSLADGKVEIRVRATGETIVVPVEEAAARLREL 594


>gi|282927605|ref|ZP_06335221.1| prolyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282590608|gb|EFB95685.1| prolyl-tRNA synthetase [Staphylococcus aureus A10102]
          Length = 567

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|328947096|ref|YP_004364433.1| threonyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447420|gb|AEB13136.1| threonyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 585

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 167/454 (36%), Gaps = 55/454 (12%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++ +L+E + RD      +L L    +     G   W P G      +   +RE+  +
Sbjct: 170 KDYITMLEEADKRDHRKLGVQLDLF--HLDPEDPGQIFWHPNGWTMYVTLQDYMREKIRK 227

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E++ P +    LW  SG +  Y K M  + +   +     P +     +IF S ++
Sbjct: 228 DGYMEVNTPAIMPRSLWERSGHWGHYQKNMF-VTESEKRMFAIKPMNCPGALEIFNSRVR 286

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F+  DA+    T +  +   +K     L
Sbjct: 287 SYKDLPLRLAEFGHCVRNEPSGTLHGIMRVRGFVQDDAHII-CTEDQIESEVSKFCRLLL 345

Query: 183 RIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++   G   ++ ++  + P       E    A+        S        P E   +  
Sbjct: 346 DVYKDFGFDKNLLVKLSTMPEDHVGDLETWQHAEKALAAACKSAGMEYEIQPGEGAFYGP 405

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP---- 297
            +    I                               R  + G I      Y LP    
Sbjct: 406 KLEFTLID---------------------------ALGRQWQCGTI---QLDYQLPSAER 435

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           ++A + GAD  K H V +    +G++     ++  ++ G   ++P  ++  +++++ +  
Sbjct: 436 LNAEYIGADNQKHHPVMLHRAVLGSLERFLGILIENYAG---VFPAWLSFEQVAVVPVAP 492

Query: 357 HDQVCRDACEKIYARLSKVGCD--VFWDDMGEQIGSQFAV-ADLLGFPLQVIVGSKFVSD 413
                    EK+   L  +G     + DD   +  ++    +     P  ++VG K   +
Sbjct: 493 ---EFNAYAEKVADELKSLGVRANAYTDDSNMK--NKIKNISTEHRTPYILVVGEKEQGE 547

Query: 414 SKVEIKHRLTGI--REDMSLEEVINYASHRFSNN 445
           + V  + R +    ++  +L+E  +Y   +   +
Sbjct: 548 NSVTCRFRFSSKIPQKTFALKEFEDYVLDKIRTH 581


>gi|301300275|ref|ZP_07206484.1| proline--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852116|gb|EFK79791.1| proline--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 570

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 147/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S 
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYSD 225



 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 1/198 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +I   +            E       E      RGIE+GHIF  GT+YS  + A     +
Sbjct: 370 NIDRDYHVDEFLDLREVREGELSPDGEGVLKFTRGIEIGHIFQLGTRYSESLGADVLDEN 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+   ++MG YGIG  R+++A++E  +D  GI WP  +APF I ++ +   +   R+  E
Sbjct: 430 GRQVPMRMGCYGIGVSRLLSAIVEQHNDENGIAWPREIAPFDIHVVPVNVKNDTQRELSE 489

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L   G  V  DD  E+ G +FA +DL+G P+++ VG K   +  VEIK R  G +
Sbjct: 490 KVTAMLEDAGYQVLVDDRKERAGVKFADSDLIGLPIRITVGKK-ADEGIVEIKLRQNGEK 548

Query: 427 EDMSLEEVINYASHRFSN 444
            ++ LEE++N     F+ 
Sbjct: 549 IEVKLEELLNSVKILFNE 566


>gi|294786669|ref|ZP_06751923.1| proline--tRNA ligase [Parascardovia denticolens F0305]
 gi|294485502|gb|EFG33136.1| proline--tRNA ligase [Parascardovia denticolens F0305]
          Length = 601

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 101/245 (41%), Positives = 144/245 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG K L+ + AIIREE
Sbjct: 10  LRMSTLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLKVLNKIEAIIREE 69

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + + 
Sbjct: 70  INALGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKD 129

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K SY     +
Sbjct: 130 MYTSYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKSYLAERAA 189

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIFHRL +  + + A SGP+GG  S EF+     GE     +     + + +  T   
Sbjct: 190 YERIFHRLAVDYVIVHAVSGPMGGSESEEFLAPLPIGEDTFALAPSGKAWNVEALTTPAM 249

Query: 241 DIISL 245
           D +  
Sbjct: 250 DPVDY 254



 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  M       +GK   V MG YGIG  RV++ + E+ HD KG+I
Sbjct: 436 RGVEIGQVFQLGLKYSKAMGLNVLNQNGKAVPVWMGCYGIGVSRVMSCIAEAHHDDKGLI 495

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP SVAP ++ LI     DQ   D  E +   L K   +V +DD  +   G +F  ++LL
Sbjct: 496 WPLSVAPAQVHLIA-TGKDQKAYDLAESLLGDLEKADVEVLYDDRAKMSPGVKFKDSELL 554

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+ V+VG   +SD  VEI++R TG ++ + L++         
Sbjct: 555 GLPMIVVVGRDTLSDGTVEIRNRATGEKDVVPLDQAAQAVQDLL 598


>gi|84998192|ref|XP_953817.1| threonyl-tRNA synthetase [Theileria annulata]
 gi|65304814|emb|CAI73139.1| threonyl-tRNA synthetase, putative [Theileria annulata]
          Length = 743

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 156/459 (33%), Gaps = 51/459 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L + +    +A+   H+ +   L+       HS G   WLP G K  + +   +R+ 
Sbjct: 309 KEQLKMYKNRIEEAKQRDHRTIGTDLKLFYFDTVHSPGSCFWLPNGAKIYNRLVEFMRDN 368

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + S DLW +SG YD+Y + M  L +  D      P +      +F+ 
Sbjct: 369 YRVRGYQEVITPNIFSCDLWKQSGHYDNYKENMY-LFNLEDTEWGMKPMNCPGHCLMFKH 427

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY+ LP       +  R+EL     G+ R R F   DA+ F  T E        +  
Sbjct: 428 LFLSYKQLPLRLADFGVLHRNELTGSLSGLTRVRRFQQDDAHIF-CTREQIMDEVLNILT 486

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +++     +    +  + P       E   +A+    +            P +    
Sbjct: 487 FIGKVYSLFDFRY-EFKLSTKPAKALGEDELWEIAEKSLEEALNKTGTKWTMNPGDG--- 542

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  LFD L    +     ++      F  +Y     
Sbjct: 543 -----------------AFYGPKIDVVLFDCLDREHQCGTIQLDFNLPIRFNLEYRDKSE 585

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           ++ +    G +  V +     G++    A++     GK   W   ++P ++  I I  + 
Sbjct: 586 SSAENVRCGFNRPVIIHRAIFGSIERFVAIVLEQTKGKLPFW---LSPNQLLFIPITDN- 641

Query: 359 QVCRDACEKIYARLSK----------------VGCDVFWDDMGEQIGSQFAVADLLGFPL 402
               D   ++Y + +                 +G +V  D     I  +        +  
Sbjct: 642 --HLDYALELYEKFNALGSNTNYIILIMIINGLGYNVDVDKSNNTINKKIKFGQQQRWNY 699

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             IVG + V    V ++ R +  +  +SL++++     +
Sbjct: 700 MGIVGDREVETRTVSLRPRDSDEQNVISLDDLVKLFESQ 738


>gi|302332869|gb|ADL23062.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 567

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV+PF + LI+I       R+  +++YA+ ++   DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVSPFDVHLISINPKKDDQRELADQLYAKFNEK-FDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|227432324|ref|ZP_03914317.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351930|gb|EEJ42163.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 572

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/241 (42%), Positives = 148/241 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L++ P +AE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLRDIPAEAEVKSHQLLLKAGYIRPIAAGMFSYLPLAKRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A EM VP +  A+LW  SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDKIDANEMLVPEVLPAELWQRSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLIAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDEAFHNMEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   +  ++G +GG  S EF   A  GE  +  S             DF 
Sbjct: 181 YTNIFDRLGLEYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSDATDYAANLEMAKDFY 240

Query: 241 D 241
           +
Sbjct: 241 E 241



 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 3/211 (1%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +              +   + +I     +           +    +   D     K   
Sbjct: 347 DERAADLANFAAGANEDGMHYVNINWNRDVDLLAENVSDFRTVREGDLAIDGKG--KLQF 404

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
             GIE+GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E   D  G+
Sbjct: 405 TSGIEIGHIFKLGTRYSKTLGAQVLDNNGRQTDVIMGSYGIGVSRLLSAIAEQKADEDGL 464

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF+I ++ I   D+      E++   L   G +V  DD  E+ G +FA ADL+
Sbjct: 465 VWPASVAPFEIHIVPINMKDEDQARVAEQLETLLVAQGMEVLVDDRKERAGVKFADADLI 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G P+++ VG K   +  VE+K R +    +M
Sbjct: 525 GLPIRITVGKK-ADEDVVEVKVRASNTNIEM 554


>gi|288924947|ref|ZP_06418883.1| threonine--tRNA ligase [Prevotella buccae D17]
 gi|288338137|gb|EFC76487.1| threonine--tRNA ligase [Prevotella buccae D17]
          Length = 673

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/430 (19%), Positives = 154/430 (35%), Gaps = 41/430 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R  
Sbjct: 228 KMLDEYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQELLRSM 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
                  E+  P +    L+V SG Y  YGK+  +       D+  +  P +     ++F
Sbjct: 287 LRPYNYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SY++LP    +    FR E      G+ R R F   DA+ F + P+  K  +   
Sbjct: 347 ARKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIF-VRPDQVKAEFETN 405

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L++F+  G  +   +                  D  + + +      D       T
Sbjct: 406 IDIILKVFNIFGFDNYEAQISLR--------------DPNDKEKYIGS---DEVWEESET 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +  +   +  +     AA      +         K    R  ++G I      Y+LP
Sbjct: 449 AIKEACAEKGLKARVELGEAAFYGPKLDF------MVKDAIGRRWQLGTI---QVDYNLP 499

Query: 298 --MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   D  K   V +     G++    AV+     G   +W   + P +++++ I
Sbjct: 500 NRFKLEYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW---LTPDQVAILPI 556

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  + +      VG     D+  E+IG +    +L   P  VIVG K  ++ 
Sbjct: 557 ---SEKYNDYAKSVARYFDSVGVRAIIDERNEKIGRKIRDNELKRVPYMVIVGEKESAEG 613

Query: 415 KVEIKHRLTG 424
            V ++ +  G
Sbjct: 614 LVSMRKQGGG 623


>gi|182435611|ref|YP_001823330.1| prolyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|226701340|sp|B1VYP2|SYP_STRGG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|178464127|dbj|BAG18647.1| putative prolyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 567

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/230 (43%), Positives = 141/230 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           ++IF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGEDTFADCPNCDYAA 235



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 6/182 (3%)

Query: 265 EKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P+     V  R IE+GHIF  G KY+        G  GK   V MGSYGIG  
Sbjct: 389 VEEGDPCPKCGTGLVLDRAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVS 448

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R VAA+ E + D KG+ WP  +AP  + ++   A   +  +    +  +L+  G  V  D
Sbjct: 449 RAVAALTEQTADDKGLCWPREIAPADVHVV--AAGKALQTELALDVSEKLNAAGLRVLVD 506

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G   G +F  ++L+G P  ++ G +  +D  +E+K R TG RE+++++E I   +  
Sbjct: 507 DRPGVSPGVKFTDSELIGVPKILVAGRRS-ADGVLELKDRRTGEREELTVDEAIARLTAD 565

Query: 442 FS 443
            +
Sbjct: 566 LA 567


>gi|116333948|ref|YP_795475.1| prolyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269368|sp|Q03QS8|SYP_LACBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116099295|gb|ABJ64444.1| Prolyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 569

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 142/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE  SH++MLR G I Q + G+Y++LPL  + L N+  IIREE
Sbjct: 1   MKQSQLLIPTLKEVPNDAEALSHQMMLRAGYIRQVTAGMYAYLPLAFRVLTNIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P +  A LW ESGRY++YG  + +  +R+D   I  PTHEE  T + R 
Sbjct: 61  MEKINAVEMLMPAVLPASLWQESGRYETYGPNLFKFKNRHDSDFILAPTHEETFTMLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++R REF+MKDAYSF L+ E     YN+M  +
Sbjct: 121 AIKSYKRLPLVMYQIQPKYRDEDRPRYGLLRGREFIMKDAYSFSLSDEDLDRIYNQMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GL    +  + G +GG  S EF  +A  GE  +  S       
Sbjct: 181 YENIFDRIGLNYRAIVGDGGAMGGKDSKEFSAIAPVGEDTIVYSDSSDYAA 231



 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 3/229 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-- 275
           E     +  ++   +       +D     +          A +D+   +  D  P+    
Sbjct: 340 EDVKILADQYVGDMVNVAVGADEDEHHYLNANLDRDFRVDAFADLREVQPGDLSPDGSGV 399

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+YS  + AT     G+   V MGSYGIG  R+++A+ E   D 
Sbjct: 400 LKFTKGIEIGHIFKLGTRYSDALGATVLDEGGRQKPVVMGSYGIGVSRLLSAIAEQQADD 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           KG++WP ++APF I L+ +            ++  +L+  G  +  DD  E+ G +FA +
Sbjct: 460 KGLVWPRNIAPFDIHLVPVNLKKDDQAQLTSELEEQLTAKGYRILTDDRKERPGVKFADS 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           DL+G P+++ +G K   +  VEIK R TG   ++  +EV +     F +
Sbjct: 520 DLMGIPVRITIGKK-AGEGIVEIKIRKTGETVEVIKDEVASTVEILFKD 567


>gi|227890630|ref|ZP_04008435.1| prolyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867568|gb|EEJ74989.1| prolyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|300214372|gb|ADJ78788.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 571

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 147/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S 
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYSD 225



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 1/198 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +I   +            E       E      RGIE+GHIF  GT+YS  + A     +
Sbjct: 371 NIDRDYHVDEFLDLREVREGELSPDGEGVLKFTRGIEIGHIFQLGTRYSESLGADVLDEN 430

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+   ++MG YGIG  R+++A++E  +D  GI WP  +APF I ++ +   +   R+  E
Sbjct: 431 GRQVPMRMGCYGIGVSRLLSAIVEQHNDENGIAWPREIAPFDIHVVPVNVKNDTQRELSE 490

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L   G  V  DD  E+ G +FA +DL+G P+++ VG K   +  VEIK R  G +
Sbjct: 491 KVTAMLEDAGYQVLVDDRKERAGVKFADSDLIGLPIRITVGKK-ADEGIVEIKLRQNGEK 549

Query: 427 EDMSLEEVINYASHRFSN 444
            ++ LEE++N     F+ 
Sbjct: 550 IEVKLEELLNSVKILFNE 567


>gi|295396369|ref|ZP_06806535.1| proline--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970809|gb|EFG46718.1| proline--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 609

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 145/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  F+  L+E P DA++ SHKL+ R   I + + GIY+WLPLG + LD V AI+R+E
Sbjct: 3   LRMSTLFVRTLKEEPADADVKSHKLLHRASYIRRSAPGIYTWLPLGLRVLDKVEAIVRDE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G+ E+  P L  A+ + +SGR++++G+ + RL DR     +  PTHEEV T + + 
Sbjct: 63  MSKAGSQEVHFPALLPAEPYEKSGRWEAFGEGIFRLQDRKKADYLLAPTHEEVFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKDAYSFD    G   +Y KM  +
Sbjct: 123 LYSSYKDLPASLYQIQTKYRDEARPRAGLLRGREFIMKDAYSFDTDDAGLDAAYEKMRKA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y+ +++RL L  + + A  G +GG  +HEF+  ++ GE     +       + +
Sbjct: 183 YINVYNRLQLPFVMVEATPGAMGGSGTHEFLYPSEVGEDTYVRTDGGYAANVEA 236



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 9/187 (4%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +   ARG+E+G IF  GT+Y+  +  +    +GK   V MGSYGIG  RV+A + 
Sbjct: 423 PDGSGELQLARGVEIGQIFKLGTRYAEALGLSVLDENGKARVVTMGSYGIGVSRVLACIA 482

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E   D KG++WP ++AP  + ++     D    D  E++ A + K G  V  DD  +   
Sbjct: 483 EEHADDKGLVWPANLAPADVHIVA-TGKDAQVFDVAEELTAEVEKAGYTVLLDDRPKVSP 541

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE----EVINYASHRFS- 443
           G +F  A+LLG P  V+VG + + D  VE++ R TG   ++ ++    ++++  + +   
Sbjct: 542 GMKFGDAELLGMPTIVVVG-RGLKDGVVELRDRATGETTNLPVDTAGQKIVDAIAEKLDA 600

Query: 444 -NNRPVL 449
            NN  +L
Sbjct: 601 INNIELL 607


>gi|50954884|ref|YP_062172.1| prolyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81826655|sp|Q6AEX8|SYP_LEIXX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50951366|gb|AAT89067.1| prolyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 590

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/235 (40%), Positives = 135/235 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R + YFL  L+E+P DAE+ SH+L++R G I + + G+++WLPLG +    +  IIREE 
Sbjct: 4   RLTNYFLRTLREDPADAEVTSHRLLVRAGYIRRQAPGVFAWLPLGLRVKAKIERIIREEL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR++ YG  +  L DR     +  PTHEE  T + +  
Sbjct: 64  AAAGAHEVHFPALLPREPYEITGRWEEYGDALFHLKDRKGADYLLAPTHEEAFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +QIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLTIFQIQDKYRDEARPRAGLLRGREFTMKDAYSFDATDAGLDVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            RIF RLGL  + ++A++G +GG  S EF+     GE     S       + +  
Sbjct: 184 ERIFARLGLDFVIVQADAGAMGGSRSEEFLHPTPIGEDTFVRSAGGYAANVEAFT 238



 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 3/161 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+GH+F  G KY+  +  T    +GK   V MGSYGIG  R++A + E ++D KG++
Sbjct: 429 RGMEIGHVFQLGRKYADALGLTVLDENGKLVTVTMGSYGIGVTRILAIIAEENNDDKGLV 488

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP++VAPF + ++     +QV  D  E+  A+L  VG DV +DD  +   G +F  A+L+
Sbjct: 489 WPEAVAPFDVHVVA-AGREQVAFDVAEQAVAQLEAVGLDVLYDDRPKVSPGVKFGDAELI 547

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G P  ++VG +  +  +VE+  R  G    + L E +   +
Sbjct: 548 GVPRVLVVG-RGAAQGEVELWDRRGGNHTTLPLSEAVAALT 587


>gi|300173485|ref|YP_003772651.1| prolyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887864|emb|CBL91832.1| Prolyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 571

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/245 (41%), Positives = 148/245 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++S+LP+ ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREIPADAEVKSHQLLLKAGFIRPVAAGMFSYLPMAKRVLNKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A EM VP +  A+LW +SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MNAIDANEMLVPEILPAELWEKSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLMSD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF     G   +++ M  +
Sbjct: 121 DIKSYKKLPLVVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDQAFHNMETA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL    +  ++G +GG  S EF   A  GE  +  S             DF 
Sbjct: 181 YIKIFDRIGLSYRAIVGDAGAMGGSDSKEFSAPAAAGEDIIAYSDATDYAANLEMAKDFY 240

Query: 241 DIISL 245
           +  + 
Sbjct: 241 ERQNQ 245



 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  GT+YS  + A     +G+   + MGSYGIG  R+++A++E   D  G+IW
Sbjct: 407 GIEIGHIFKLGTRYSKVLGAQVLNENGRQTDMIMGSYGIGVSRLLSAIVEQKADADGLIW 466

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P +VAPF + ++ +   D        ++   L+  G +V  DD  E+ G +FA ADL+G 
Sbjct: 467 PANVAPFDVHIVPVNIKDADQVRVAGQLETLLTTQGLEVLVDDRKERAGVKFADADLIGL 526

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           P+++ VG K  S+  VE+K R +    +M L EV++  S   S ++
Sbjct: 527 PIRITVGKK-ASEDIVEVKVRASNTNIEMRLSEVVDSVSVLLSGDK 571


>gi|290980243|ref|XP_002672842.1| predicted protein [Naegleria gruberi]
 gi|284086421|gb|EFC40098.1| predicted protein [Naegleria gruberi]
          Length = 720

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/458 (16%), Positives = 168/458 (36%), Gaps = 48/458 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + +  +++E   RD  + + K  L     H++S G   +LP G +  + +   IR+E
Sbjct: 298 KQLEDWQTLIEEALKRDHRLIAKKQDLF--FFHEYSPGTPFFLPHGTRLFNKLVEFIRKE 355

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTDI 117
             + G  E+  P +   +LW  SG +  Y  +M  + +     ++ +   P +      +
Sbjct: 356 YRKRGYDEVITPQMFQKELWETSGHWQHYKDDMFTVIEGTQHKEETIGIKPMNCPAHCLM 415

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F S I+SYR LP          R+E R    G+ R R F   D++ F  T +  K     
Sbjct: 416 FDSKIRSYRELPVRLADFSPLHRNEPRGSLTGLTRVRRFHQDDSHIF-CTHDQVKSEIEN 474

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  ++  +   ++     + P       E   + D  E  +    D  ++ +   +
Sbjct: 475 CLQFVKFVYSEIFGFNLRFNLSTRPEKFVGDIE---MWDKAEQSLKECLDGYNWKLNEGD 531

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             F                        + ++ DSL    + +   ++    F    +++L
Sbjct: 532 GAFYG-------------------PKIDIQIEDSLQRFHQCATIQLD----FQLPRRFNL 568

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              +     D     V +    +G++    A++     G    WP  + P +  +  + A
Sbjct: 569 KYQSQ---NDQLITPVIIHRAILGSIERFIALLTEHLSG---RWPFWLNPRQCFICPVSA 622

Query: 357 HDQVCRDACEKIYARLSK--------VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +    D C+++  ++ K            +  D   + +  +   A +L +   +++G 
Sbjct: 623 ENASLVDYCKEVKDQIFKTAEERGVFSNYFIDVDLSDKTMKKKIRDAQVLQYNFILVLGE 682

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           K + +  V ++ R   +   M ++ +++         +
Sbjct: 683 KEMQEKTVSVRKRDGTLVGTMKIDALLSMWEELLRTYQ 720


>gi|91204601|emb|CAJ70829.1| strongly similar to prolyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 576

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/227 (51%), Positives = 158/227 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +P L+E+P +AEI SHKLM+R G+I + + G Y++LPLG   L+ V AI+REE
Sbjct: 1   MKWSQTLIPTLKESPSEAEIDSHKLMIRAGLIRRITSGAYAYLPLGTLVLNKVIAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GAIE+ +P LQ  DL  ESGR D +G +++   DR+ K  +  PTHEEV+T I ++
Sbjct: 61  MNRSGAIEVFLPALQHLDLLKESGRLDVFGADLITFQDRHGKETVLSPTHEEVITYIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGV+RS+EF+MKDAYSFDL  +G  +SY  M+ +
Sbjct: 121 EINSYKQLPITLYQIQTKFRDEMRPRFGVLRSKEFIMKDAYSFDLDEKGLNNSYQLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R  L  I   A+SG +GGD SHEF+V +  GE  +   ++ 
Sbjct: 181 YCRIFDRCRLDYIIAEADSGAMGGDASHEFMVPSPVGEDILILCRNC 227



 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 103/183 (56%), Gaps = 5/183 (2%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                +    ++GIE+GH+F  GTKY+  + A +  ADGK+    MG YGIG  R++AA+
Sbjct: 391 CPHCNHVLEISQGIEIGHVFKLGTKYTSALKAHYLDADGKEKPKVMGCYGIGVNRIIAAI 450

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQ 387
           IE SHD  GIIWP S+AP+ + +I +   D +C DA   IY  ++ + G DV  DD   +
Sbjct: 451 IEISHDENGIIWPMSLAPYHVIIIPVNVKDTICMDAARSIYDDMTNMKGIDVLLDDRDLR 510

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI----REDMSLEEVINYASHRFS 443
            G +F  ADL+G P+++I+G K+    ++EIK R +G       + + +E+     H   
Sbjct: 511 PGVKFKDADLIGIPVKIIIGKKYTETKELEIKLRKSGEVFLTHIENTKQELERILQHLIK 570

Query: 444 NNR 446
             R
Sbjct: 571 TER 573


>gi|145224625|ref|YP_001135303.1| prolyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|145217111|gb|ABP46515.1| prolyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
          Length = 588

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/225 (41%), Positives = 133/225 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIEHIVRSEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +  
Sbjct: 64  DAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRDNDYLLGPTHEEMFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y+    +Y
Sbjct: 124 YSSYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVDDDGLKNAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            RIF RL ++ + + A SG +GG  S EF+  ++ GE        
Sbjct: 184 QRIFDRLKVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRCAQ 228



 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 2/152 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  G KY+   +A   G +GK   + MGSYGIG  R+VA + E  HD  G+ 
Sbjct: 423 RGIEIGHVFQLGRKYADAFNADVLGENGKPVRLTMGSYGIGVSRLVAVIAEQHHDELGLR 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAPF + ++ I   D   R    ++   L + G DV  DD     G +F  A+LLG
Sbjct: 483 WPGSVAPFAVHVV-IANKDAEARAGATELATALDRAGADVLLDDRTASPGVKFKDAELLG 541

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            P  V+VG +  +D  VE++ R +G + ++ +
Sbjct: 542 VPWIVVVG-RGWADGVVELRDRFSGEKREIPV 572


>gi|330718639|ref|ZP_08313239.1| prolyl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 572

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 150/265 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH L+L+ G I   + G++S+LPL Q+ L+ + AI+REE
Sbjct: 1   MKQSKLLMPTLREVPADAEVRSHALLLKAGYIRPVAAGMFSYLPLAQRVLNKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EMSVP +  A+LW ESGRY +YG  + +  +R ++  I GPTHEE  T + R 
Sbjct: 61  MAKIDANEMSVPEILPAELWQESGRYATYGPALYKFKNRQNRDFILGPTHEETFTQLMRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +Y  M  +
Sbjct: 121 DIKSYKKLPLLVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDDAYRAMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    +  ++G +GG  S EF   AD GE  +  S             DF 
Sbjct: 181 YTNIFDRVGLTYRAIVGDAGAMGGSDSKEFSAPADAGEDIIAYSDATDYAANLEMAKDFY 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           +  + +                  E
Sbjct: 241 ERQTSDEAPLDLVTLETPNVKSIEE 265



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 1/216 (0%)

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + D  +F   + + D                       V  E       + K V  +GIE
Sbjct: 351 AADMANFTAGANHDDQHLSHINWQRDVTLPEENVGDFRVAREGDLSVDGKGKLVFTKGIE 410

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +GHIF  GT+YS  + A     +G+   + MGSYGIG  R+++A+ E   D  G++WP S
Sbjct: 411 IGHIFKLGTRYSEALGAQVLDKNGRQTDMIMGSYGIGISRLLSAISEQKADEDGLVWPTS 470

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           VAPF + ++ I   D        ++ +     G +V  DD  E+ G +FA ADL+G P++
Sbjct: 471 VAPFDVHIVPINLKDTEQARVTRQLESEFLAQGLEVLVDDRKERAGVKFADADLIGLPIR 530

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + VG K   +  VE+K R +    +M + EV++  +
Sbjct: 531 ITVGKK-AEEDIVEVKVRASNTNIEMRVSEVVDSVA 565


>gi|253731882|ref|ZP_04866047.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724292|gb|EES93021.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 567

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRRFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|241818170|ref|XP_002416554.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|215511018|gb|EEC20471.1| tRNA synthetases class II, putative [Ixodes scapularis]
          Length = 410

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 195/435 (44%), Gaps = 43/435 (9%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +LML  G+I     G +  LPL  K+L+ +  +I  E    G  ++ +P L    L+ ++
Sbjct: 1   QLMLDYGLISPSGTGTFVLLPLATKSLERLVDLIDSELQSVGGQKILLPCLVPGSLFKKT 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEE-VMTDIFRSHIKSYRNLPFTFYQIQ---LKF 139
           G+++  G E+ +L DR D     GPTHEE V   +      S R LP   YQ++     +
Sbjct: 61  GKWEDMGDELFKLKDRRDHDYCLGPTHEEAVSQLLASLPSLSLRCLPILLYQVRGRLSHY 120

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R  + P  G + +   L  D YSFD + E +  +Y+ +  +Y RI  RLG+  + ++A S
Sbjct: 121 RRCMAP--GFVATCGTLFADMYSFDRSAESAAETYDIVCTAYSRILERLGVPFVKVKASS 178

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G +GG+ SHEF  L++ GE ++F                                     
Sbjct: 179 GAMGGNYSHEFHFLSNIGEDRLFVCPKCHIGV---------------------------- 210

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           S    E              RG+EV H F  GT YS P+ A+F  +DGK+  + M  +GI
Sbjct: 211 SADKTENQPCDQCSTPLEEERGVEVAHAFSLGTVYSDPLKASFMDSDGKNKALVMNCFGI 270

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCRDACEKIYARLSKVG 376
           G  R++AA +E       + WP ++APFK++++  KA    ++V       + + LS   
Sbjct: 271 GVTRLLAASLEVLSTQSQLRWPLAIAPFKVAVVTPKARSHEEEVGLPLSLHLTSCLSSQD 330

Query: 377 C---DVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSL 431
               DV  DD     IG +    D +G P  V+ G +        E+     G   +++ 
Sbjct: 331 ILAGDVLLDDRDSWTIGKRLKDLDHMGVPFVVVAGKRSAEAMPLFELHDVYRGSVTEVTQ 390

Query: 432 EEVINYASH-RFSNN 445
            E++++  H +F   
Sbjct: 391 SELLHFFQHGKFREK 405


>gi|254368866|ref|ZP_04984879.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121787|gb|EDO65957.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 565

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/286 (39%), Positives = 175/286 (61%), Gaps = 7/286 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                  + S N+I +  T        +  E  FD     K +  +
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIK 285



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 3/202 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K       GIEVGHIF     YS PM
Sbjct: 364 DDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           +A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I    
Sbjct: 424 NANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +K+   L   G DV  DD G + G  FA ADL+G+   V++G + +    +E
Sbjct: 484 SAKVKEVADKLCQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIE 543

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
            K+R T  ++++++ E+I    
Sbjct: 544 YKNRKTQEKQEITIAELIKILK 565


>gi|90961542|ref|YP_535458.1| prolyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|114152204|sp|Q1WUG0|SYP_LACS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|90820736|gb|ABD99375.1| Prolyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 571

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 147/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S 
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYSD 225



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 1/198 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +I   +            E       E      RGIE+GHIF  GT+YS  + A     +
Sbjct: 371 NIDRDYHVDEFLDLREVREGELSPDGEGVLKFTRGIEIGHIFQLGTRYSESLGADVLDEN 430

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+   ++MG YGIG  R+++A++E  +D  GI WP  +APF I ++ +   +   R+  E
Sbjct: 431 GRQVPMRMGCYGIGVSRLLSAIVEQHNDENGIAWPREIAPFDIHVVPVNVKNDTQRELSE 490

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L   G  V  DD  E+ G +FA +DL+G P+++ VG K   +  VEIK R  G +
Sbjct: 491 KVTAMLEDAGYQVLVDDRKERAGVKFADSDLIGLPIRITVGKK-ADEGIVEIKLRQNGEK 549

Query: 427 EDMSLEEVINYASHRFSN 444
            ++ LEE++N     F+ 
Sbjct: 550 IEVKLEELLNSVKILFNE 567


>gi|227495079|ref|ZP_03925395.1| proline--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831531|gb|EEH63914.1| proline--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 603

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/232 (41%), Positives = 140/232 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +F+  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  ++REE +
Sbjct: 5   MSSFFVRTLREDPADAEVTSHKLLVRAGYIRRTAPGIYTWLPLGLQVLKRIEKVVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L  A+ + ++ R++ YG  + +L DR     +  PTHEE+ T + +   
Sbjct: 65  AVGAQEVHFPALLPAEPYQKTNRWEEYGPTLFKLRDRKAADYLLAPTHEEMFTLLVKDMY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY+    +Y 
Sbjct: 125 SSYKDLPVTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDQEGLNTSYDLQRQAYQ 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RLGL+ +   A SG +GG  S EF+   + GE     S         +
Sbjct: 185 RIFERLGLEYVICSAMSGAMGGSRSEEFLHPCEIGEDTFVRSPGGYAANAEA 236



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +       +GK   V MGSYG+G  RV+AA+ ES +D  G+ 
Sbjct: 434 RGIEIGHIFQLGKKYAEALDLKVLDQNGKTQVVTMGSYGVGVSRVLAALAESCNDENGLA 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +APF + ++     +++  +    I   +S  G DV +DD  +   G +FA A+LL
Sbjct: 494 WPMILAPFHLQVLATGKGEELF-ETAGSIAKAVSDAGFDVLYDDRPKVSAGVKFADAELL 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           G P  ++VG + + D  VE++ R  G   ++ + E           NR 
Sbjct: 553 GMPYVLVVG-RGLKDGVVELRDRRNGTAVELPVAEASAEILRVLEENRE 600


>gi|89256041|ref|YP_513403.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314517|ref|YP_763240.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502051|ref|YP_001428116.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010208|ref|ZP_02275139.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|290953930|ref|ZP_06558551.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312679|ref|ZP_06803424.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|114152197|sp|Q2A4E9|SYP_FRATH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122325457|sp|Q0BMT1|SYP_FRATO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980124|sp|A7NB07|SYP_FRATF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89143872|emb|CAJ79090.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129416|gb|ABI82603.1| proline--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156252654|gb|ABU61160.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 565

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/286 (39%), Positives = 175/286 (61%), Gaps = 7/286 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                  + S N+I +  T        +  E  FD     K +  +
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIK 285



 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 3/202 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K       GIEVGHIF     YS PM
Sbjct: 364 DDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           +A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I    
Sbjct: 424 NANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +K+   L   G DV  DD G + G  FA ADL+G+   V++G + +    +E
Sbjct: 484 SDKVKEVADKLCQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIE 543

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
            K+R T  ++++++ E+I    
Sbjct: 544 YKNRKTQEKQEITIAELIKLLK 565


>gi|332797162|ref|YP_004458662.1| threonyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694897|gb|AEE94364.1| threonyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 542

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 162/448 (36%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K ++  L++    D  I   K+ L +    +   G+  + P GQ   + +   ++E  
Sbjct: 120 QLKDYMNWLEKASETDHRILGEKMDLFS-FPEEAGPGLVLYHPKGQIIRNELIDYMKEIN 178

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+    +    LW  SG Y+ Y  +ML     +D+ +   P +      I++S 
Sbjct: 179 ASMGYQEVYTTHVYRTILWKISGHYEMYKDKMLIFTH-DDEELGIKPMNCPAHILIYKSR 237

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY++LP  F +    +R E +    G++R R F   D + F L  +  ++    +   
Sbjct: 238 TRSYKDLPIRFSEFGNVYRWEQKGELYGLLRVRGFTQDDGHVF-LREDQLENEVKMLISK 296

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            L +  + G     + +   + P     + E    A         S              
Sbjct: 297 TLEVLAKFGFKGDDVRINLSTRPDESIGTDEQWEKATNALVNALRSL------------- 343

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                  N   +      A      +  + DSL    ++S   ++    F    ++    
Sbjct: 344 -------NLKYQVKEKEGAFYGPKIDFDIRDSLGRWWQLSTIQVD----FNLPERF---- 388

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W   ++P ++ ++ I   
Sbjct: 389 KLEYVDKDGSKKRPVMVHRAIYGSIDRFLAILLEHFKGKLPTW---LSPIQVRILPINP- 444

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R+  EK+ ++L  V      D   E +  +   A   G P  +I+G K    + V 
Sbjct: 445 --EVREYAEKVLSKLVSVKIRAEIDSEEETLSKRIKKAYDDGVPYILIIGKKEAESNSVT 502

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R     + + L++ ++  S    N 
Sbjct: 503 IRARGNIEVKGVPLDKCVDAISKEIQNR 530


>gi|270307741|ref|YP_003329799.1| prolyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153633|gb|ACZ61471.1| prolyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 569

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKSGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDESYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +          
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKCNYAA 231



 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 63/181 (34%), Positives = 92/181 (50%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +    S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R+
Sbjct: 386 EGAACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGISHPIIMGCYGMGVGRL 445

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA IE +HD KGIIWP  +AP+++ +  +         A EK+YA L   G +V +DD 
Sbjct: 446 LAAAIEQNHDEKGIIWPMPIAPYQVYICGLFLDKPAVSQAAEKMYAELEAQGVEVLFDDR 505

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F  ADLLG PL++ +  + +    VE+K R     E + L+ ++        +
Sbjct: 506 ELTAGVKFNDADLLGIPLRLTISPRNLDKGGVELKLRRNKEAELVPLDNIVEKVIATIKS 565

Query: 445 N 445
            
Sbjct: 566 E 566


>gi|325847870|ref|ZP_08170092.1| proline--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480888|gb|EGC83941.1| proline--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 572

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/239 (43%), Positives = 157/239 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+++P+DAE  SHKL++R   I + S G+YS+LPLG + ++ +  I+R+ 
Sbjct: 1   MRLSNYYMPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMRVINKIENIVRKS 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  +IE+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T + + 
Sbjct: 61  MEKYDSIEVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREYCLGPTAEEQFTSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLEKSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y+ +F  LGL    +  +SG +GG+ SHEF+ LA+TGE ++F +++            F
Sbjct: 181 YVEVFDALGLDYKIVEGDSGAMGGNTSHEFMALAETGEGEIFYTENSDYAATDESAKFF 239



 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 91/174 (52%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + +   ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R ++A+IE 
Sbjct: 397 GKEELKIARGIEVGNIFQLGTKYSESLEAYFLDENGKQKPFIMGSYGIGITRSISAIIEQ 456

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++D  GIIWP  VAPF+  +  +  + +  +   EKIY  L   G +V  DD  E+ G +
Sbjct: 457 NYDDNGIIWPTKVAPFEAWITLVNKNKEDQKQLAEKIYESLLDQGIEVMLDDRKERAGVK 516

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F   DL+G P ++ VG K  SD  VE   R       MS +E I         +
Sbjct: 517 FNDRDLVGCPYRITVG-KDASDDIVEFSKRSDMENLKMSSDEAIEKIVTSIKED 569


>gi|315604309|ref|ZP_07879375.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314015|gb|EFU62066.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 677

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 153/461 (33%), Gaps = 47/461 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHK-LMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L   QE  ++AE   H+ L +   +     +   G+  + P G      + + + 
Sbjct: 234 ASKEDLVAYQERIKEAERRDHRRLGVELDLFSFPEEIGPGLVVFHPKGGILRHEIESYVT 293

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIY 106
           +   R G   +  P +    L+  SG    Y   M      +++                
Sbjct: 294 DRHKRAGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLVDEERDADGNVTKAGQEYYL 353

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  FY++   +R E      G+ R R F   D++++  
Sbjct: 354 KAMNCPMHNLIFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-C 412

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           TPE +          +L I    GLK   +   +    G    +FI    + E     +K
Sbjct: 413 TPEQASQEIRTQIEFFLSILSAFGLKDFYLELSTRDEDGKKKDKFI---GSDEDWAAATK 469

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              D    +      D               A      + ++ D++    ++S    +  
Sbjct: 470 ALQDACAATGLDLVPDPGGA-----------AFYGPKVSVQVKDAIGRTWQMSTIQYDFN 518

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     V + S  +G++     V+   + G    W   +
Sbjct: 519 QPER--------FDLEYTAADGTRQRPVMIHSAKLGSVERFIGVLTEHYAGAFPAW---L 567

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ LI +    +        + A+L + G  V  D   ++ G +   A     P  +
Sbjct: 568 SPVQVRLIPVA---EAFDGYVADVAAKLRERGVRVETDLSDDRFGKKIRNASKDKIPFTL 624

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           I G + V    V  + R       + +E  ++         
Sbjct: 625 IAGGEDVEAGAVSFRLRDGSQHNGVPVERAVDLIVAHVEER 665


>gi|254373305|ref|ZP_04988793.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151571031|gb|EDN36685.1| prolyl-tRNA synthetase [Francisella novicida GA99-3549]
          Length = 565

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/296 (39%), Positives = 179/296 (60%), Gaps = 8/296 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGVKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                  + S N+I +  T        +  E  FD     K +  +  E G+ F  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAE-GNFFAL 294



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D     ++           +D+ N    D  P+ K       GIEVGHIF     YS P
Sbjct: 363 QDDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKP 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           M+A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I   
Sbjct: 423 MNANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYN 482

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +
Sbjct: 483 KSDKVKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLI 542

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K+R T  ++++++ E+I   +
Sbjct: 543 EYKNRKTQEKQEITIAELIKILT 565


>gi|116075299|ref|ZP_01472559.1| prolyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116067496|gb|EAU73250.1| prolyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 600

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/228 (47%), Positives = 150/228 (65%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I +   GIY++LPL  + L  ++AI+++E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGYIRRVGSGIYAYLPLMWRVLRKISAIVQQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWERSGRWQGYTAGEGIMFHLEDRQGRQVGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    +     Y +M
Sbjct: 121 AGELLRSYRQLPVTVYQIQNKFRDEIRPRFGLMRGREFIMKDAYSFHADEQDLGRCYGEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            ++Y RIF R GL+++ + A+SG IGG  S EF+V A+ GE  +  S+
Sbjct: 181 DLAYRRIFERCGLQAVAVEADSGAIGGAASQEFMVTAEAGEDLILTSE 228



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+   V+ RGIEVGHIF  G KYS  M ATF  A+G      MG YGIG  R+  A +E 
Sbjct: 422 PDQTLVARRGIEVGHIFQLGRKYSQAMDATFTTAEGGQDAFWMGCYGIGVSRLAQAAVEQ 481

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD  GI WP ++APF++ ++     D       E++Y+ L   G DV  DD  E+ G +
Sbjct: 482 HHDKAGICWPLAIAPFQVVIVVANMQDDTQLQLGEQLYSTLQASGIDVLLDDRSERAGVK 541

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +++VG +  ++ +VE+  R T   + +   E I       +
Sbjct: 542 FKDADLIGIPWRLVVG-RDAANGQVELVERATRDTQVLPHAEAITALRQVMN 592


>gi|167627536|ref|YP_001678036.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189083499|sp|B0TXX4|SYP_FRAP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167597537|gb|ABZ87535.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 565

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 155/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+P+G K L  +  I+REE
Sbjct: 1   MKATQTLIATTKELPKEAVLTSHQYMLKAGLIKKLASGIYTWMPIGLKVLQKIQNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSVLPSELLQETHRWDKFGPELLKLKDRHERDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    E   ++YNKM  +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSECLHNTYNKMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  I  ++GL   P+RA++G IGGD SHEF VLA+ GE  +  S 
Sbjct: 181 YCNILDKIGLVYRPVRADTGAIGGDNSHEFQVLANAGEDIICYSN 225



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 3/208 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
                +D     ++           +D+ N    D  P+N        GIEVGHIF    
Sbjct: 358 CCGANEDDYHFTNVNWGRDITSYQIADIRNVVTGDISPDNNGTLELTNGIEVGHIFELED 417

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            YS PM+A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+++AP++++++
Sbjct: 418 VYSKPMNANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPETIAPYQVAIL 477

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I     +  +   +K+Y  L   G DV  DD G + G  FA ADL+GF   V++G + +
Sbjct: 478 PINYNKSESVKQTADKLYQELLVKGIDVILDDRGARPGVMFADADLIGFSHHVVIGDRLL 537

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               VE K+R T  ++++ LE++ +  +
Sbjct: 538 EQGLVEYKNRKTQEKQEIRLEKLFDILA 565


>gi|118497952|ref|YP_899002.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323174|ref|ZP_03056958.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
 gi|152112922|sp|A0Q7N3|SYP_FRATN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118423858|gb|ABK90248.1| prolyl-tRNA synthetase [Francisella novicida U112]
 gi|194322538|gb|EDX20018.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 565

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/296 (39%), Positives = 179/296 (60%), Gaps = 8/296 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                  + S N+I +  T        +  E  FD     K +  +  E G+ F  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAE-GNFFAL 294



 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D     ++           +D+ N    D  P+ K       GIEVGHIF     YS P
Sbjct: 363 QDDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKP 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           M+A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I   
Sbjct: 423 MNANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYN 482

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +
Sbjct: 483 KSDKVKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLI 542

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K+R T  ++++++ E+I   +
Sbjct: 543 EYKNRKTQEKQEITITELIKILT 565


>gi|329939431|ref|ZP_08288767.1| threonyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301660|gb|EGG45554.1| threonyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 666

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 137/431 (31%), Gaps = 39/431 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D      +L L +    +   G+  + P G      +    R +   
Sbjct: 249 KAYLKLLEEASRRDHRKLGAELDLFS-FPDEIGSGLAVFHPKGGIVRREMENYSRVKHEE 307

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +    L+  SG    Y   M    +         P +      IF+S  +
Sbjct: 308 AGYSFVNSPHITKGKLFETSGHLPYYADTMFPPIEMEGADYYLKPMNCPFHNLIFKSRGR 367

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R   M D++ +  T E        +    L
Sbjct: 368 SYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDSHIY-CTREQMAGELTSLLRFVL 426

Query: 183 RIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +    GL    +   +         S E    A                P P       
Sbjct: 427 ALLRDYGLDDFYLELSTRDDSPKFIGSDEDWEEATEALRSAAAESGLELVPDPG------ 480

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +  D++    ++S   ++      FG +YS     
Sbjct: 481 --------------GAAFYGPKISVQAKDAIGRTWQMSTIQVDFNQPKRFGLEYSAANG- 525

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G++  V +     G++     V+   + G    W   +AP ++  I I+   + 
Sbjct: 526 ------GREQPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIPIR---ED 573

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   +  A+L + G     D   +++  +   A     P   I G   V+   V  ++
Sbjct: 574 HADYLAEFVAKLREHGIRAEVDHSDDRMQKKIRTAQQQKIPFMAIAGDDDVNGGTVSFRY 633

Query: 421 RLTGIREDMSL 431
           R    R  + L
Sbjct: 634 RDGSQRNGVPL 644


>gi|298250750|ref|ZP_06974554.1| threonyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297548754|gb|EFH82621.1| threonyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 624

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 160/446 (35%), Gaps = 43/446 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L          G+  + P G    D +   ++  Q   G
Sbjct: 203 YLWLLEESKKRDHRRLGQELDLFA-FSDLVGGGLPLFTPKGTLVRDLLEEFVQSLQEPLG 261

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              + +P +   DL+  SG ++ + +++  ++ ++ +     P +    T I+ S ++SY
Sbjct: 262 YQRVHIPHITKNDLYKTSGHWEKFQEDIFHVSGKSGEDFCMKPMNCPHHTQIYASRMRSY 321

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++   +RDEL     G+ R R     DA+ F  TP+  +    +++      
Sbjct: 322 RELPIRLSEVTTVYRDELPGTLHGLSRVRAITQDDAHVF-CTPDQVQEEVLRIYSIIENF 380

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G+ ++ +R                L D    + +     +      +      +  
Sbjct: 381 YKPFGM-TLAVRLS--------------LWDEEHPEKYLGTPELWNSAQEQLRAV--LRM 423

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                 +     A      +    D+L    +++   ++    F    +++L     + G
Sbjct: 424 KGIEWVEEVGEAAFYGPKIDFTALDALERTWQLATIQLD----FNLPERFNL----EYMG 475

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG     V +    +G++    +V+   + G    W   ++P +  +I I        D
Sbjct: 476 PDGHAARPVMLHRAVLGSVERFMSVLIEHYAGAFPTW---LSPVQAMIIPIA---DRHLD 529

Query: 364 ACEKIYARLSKVG-------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              ++   L  V          V  D+  E +  +   A L   P  +++G K   + +V
Sbjct: 530 YAYQVKQSLLDVRLSSARESIRVEVDEARESMQKKIRNAQLQKVPYMLVLGDKEAENGEV 589

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++HR       +S+  +        
Sbjct: 590 NVRHRSGVNLGTLSVSALAERIKQEI 615


>gi|325068893|ref|ZP_08127566.1| threonine--tRNA ligase [Actinomyces oris K20]
          Length = 683

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/454 (16%), Positives = 142/454 (31%), Gaps = 44/454 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +   + +     G
Sbjct: 248 YQTRLAEAAKRDHRKLGAELDLYS-FPEEIGPGLVVFHPKGAMLRHQIEQYVVDRHQDYG 306

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRN----------DKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M      D             +       +  +
Sbjct: 307 FDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLADEERDAEGNITKAGQEYYLKAMNCPM 366

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  TPE +  
Sbjct: 367 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQAGE 425

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                   +L I    GL    +   +    G             +   F   D      
Sbjct: 426 EIRAQIDFFLSILKAFGLTDFYLELSTRDEDG------------AKKDKFIGSDADWAAA 473

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                D  D   L  + +      A      + ++ D++    ++S    +         
Sbjct: 474 TQALQDACDASGLEVVPD--PGGAAFYGPKVSVQVKDAIGRTWQMSTIQYDFNQPER--- 528

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG     + + S  +G++     V+   + G    W   ++P ++ L
Sbjct: 529 -----FDLEYTAADGTHQRPIMIHSAKLGSVERFIGVLTEHYAGAFPAW---LSPVQVRL 580

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +    +      + + A+L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 581 IPVA---EAFDAYVDDVAAQLRAQGVRVEVDHSDDRFGKKIRNASKDKIPFTLIAGGEDA 637

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               V  + R       + ++E + +        
Sbjct: 638 EAGAVSFRFRDGQQTNGVPVKEAVAHIVSVIDAR 671


>gi|254374768|ref|ZP_04990249.1| hypothetical protein FTDG_00943 [Francisella novicida GA99-3548]
 gi|151572487|gb|EDN38141.1| hypothetical protein FTDG_00943 [Francisella novicida GA99-3548]
          Length = 565

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/296 (39%), Positives = 179/296 (60%), Gaps = 8/296 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                  + S N+I +  T        +  E  FD     K +  +  E G+ F  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAE-GNFFAL 294



 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D     ++           +D+ N    D  P+ K       GIEVGHIF     YS P
Sbjct: 363 QDDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKP 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           M+A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I   
Sbjct: 423 MNANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYN 482

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +
Sbjct: 483 KSDKVKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLI 542

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K+R T  ++++++ E+I   +
Sbjct: 543 EYKNRKTQEKQEITIAELIKILT 565


>gi|291571004|dbj|BAI93276.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 604

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 145/443 (32%), Gaps = 47/443 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   ++ EQ R G   + 
Sbjct: 196 EEALRRDHRRLGKELGLFI-FSDQVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L   +L+  SG +  Y +++  +  +  D+  +    +      I++S ++SYR LP
Sbjct: 255 TPHLGRVNLFKTSGHWQKYREDLFPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELP 314

Query: 130 FTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +    +R E     G + R R F   DA+ F +TPE     + K+      +  +L
Sbjct: 315 IRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLF-VTPEQLDDEFLKVVDLIQSVLKKL 373

Query: 189 GLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            L  S   R        D         +  E  +  +                       
Sbjct: 374 KLDQSFKARLSFRDPNSDKYIGSDQAWEKAENAIRRA----------------------- 410

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATF 302
                        +        +    K        +   +  GT    Y+LP      +
Sbjct: 411 -------VETLGMNYFEGIGEAAFYGPKLDFIVQDALEREWQLGTVQVDYNLPERFDLEY 463

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     V +     G++  +  ++   + G   +W   +AP  + L+ +       
Sbjct: 464 VAEDGTRQRPVMIHRAPFGSLERLIGILIEEYTGDFPLW---LAPVMVRLLPV---SDEF 517

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +  +   +      D   +++G     A+    P+  +VG+K V  + + I+ R
Sbjct: 518 LPFVESVAEKWRSLDIRAEADHSHDRLGKMIRNAEKAKVPVMAVVGAKEVESNSLSIRTR 577

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G    +++ E  +      +N
Sbjct: 578 ALGELGTLTVAETQSRLQFALAN 600


>gi|208779640|ref|ZP_03246985.1| prolyl-tRNA synthetase [Francisella novicida FTG]
 gi|208744601|gb|EDZ90900.1| prolyl-tRNA synthetase [Francisella novicida FTG]
          Length = 565

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 116/296 (39%), Positives = 179/296 (60%), Gaps = 8/296 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLNDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                  + S N+I +  T        +  E  FD     K +  +  E G+ F  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAE-GNFFAL 294



 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D     ++           +D+ N    D  P+ K       GIEVGHIF     YS P
Sbjct: 363 QDDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKP 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           M+A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I   
Sbjct: 423 MNANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYN 482

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +
Sbjct: 483 KSDKVKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQELI 542

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K+R T  ++++++ E+I   +
Sbjct: 543 EYKNRKTQEKQEITIAELIKILT 565


>gi|221217966|ref|ZP_03589433.1| threonyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224533347|ref|ZP_03673941.1| threonyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225549973|ref|ZP_03770934.1| threonyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|221192272|gb|EEE18492.1| threonyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224513512|gb|EEF83869.1| threonyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225369432|gb|EEG98884.1| threonyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 581

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 162/448 (36%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  +      + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSNPKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEET 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P ++ +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +   + ++ 
Sbjct: 494 --IVEDYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREAIEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       M L+E + +   +  + 
Sbjct: 552 IRTRTNEQINGMKLDEALKFILFKIRDK 579


>gi|149919496|ref|ZP_01907976.1| hypothetical protein PPSIR1_10610 [Plesiocystis pacifica SIR-1]
 gi|149819621|gb|EDM79048.1| hypothetical protein PPSIR1_10610 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 146/445 (32%), Gaps = 49/445 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLM-LRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K  L  L+E    A+   H+ + +  G+ H    +     +   G    + +   +R
Sbjct: 181 KQLKKHLAALEE----AKKRDHRKLGVELGLFHFDPIAPASPFFTERGATIYNLLQEYVR 236

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   +    E+  P +   +L+  SG YD Y   M   ++ +++     P +      ++
Sbjct: 237 KLYRKYDYGEVITPQIFDMELFRTSGHYDHYKDNMFS-SEIDNREFGVKPMNCPGHCVLY 295

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           R   KSYR LP          R E      G+ R R F   DA+ F    +  +     +
Sbjct: 296 RQTRKSYRELPIRMADFGRLHRYERAGVTHGLTRVRTFCQDDAHVF-CRLDQLEQEIESV 354

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G + + +   + P       E    A+     V   +         +  
Sbjct: 355 TSMILETYEAFGFEDVEIEISTRPDSYLGELETWDRAEKALADVLTRQGINYAINEGDGA 414

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH---IFYFGTKY 294
            +   I                               +    R  ++G     F    ++
Sbjct: 415 FYGPKIDFGV---------------------------RDALRRPWQLGTCQLDFQLPERF 447

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            L         D +   V +    +G++     V      GK   W   +AP +I+++ I
Sbjct: 448 KLEY---VSADDARARPVMIHRAMLGSLERFFGVYLEHTAGKFPTW---LAPVQIAILPI 501

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   K+ A     G  V  DD  E++G +   A LL  P  +++G K V   
Sbjct: 502 T---DAHAEWARKVEAACKAAGLRVTTDDRSEKLGLKIREATLLRVPYMLVLGDKEVEAQ 558

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
            V  + R        SLE+ +   +
Sbjct: 559 GVAPRTRDGKTGALESLEDFVARIA 583


>gi|320096236|ref|ZP_08027820.1| proline--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976817|gb|EFW08576.1| proline--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 594

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/231 (43%), Positives = 141/231 (61%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +R
Sbjct: 6   STLFLRTLREDPADAEVNSHKLLVRAGYIRRAAPGIYTWLPLGLRTLRKIEGIVREEMDR 65

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA E+  P L  A+ +  + R++ YG  + +LADR     +  PTHEE+ T + +    
Sbjct: 66  MGAQEVHFPGLIPAEPYKATNRWEDYGPTLFKLADRKGGDYLLAPTHEEMFTLLVKDMYS 125

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G + SY     +Y R
Sbjct: 126 SYKDLPTTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDEAGLEASYQAERDTYER 185

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           IF RLGL+ + + A SG +GG  S EF+  +  GE     S       + +
Sbjct: 186 IFTRLGLEYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVRSPGGYAANVEA 236



 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 29/191 (15%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              RGIE+GHIF  G+KY+  +  +    +GK   V MGSYGIG  RV
Sbjct: 411 EGDEAPDGSGPLHVERGIEIGHIFQLGSKYAEALGLSVLDENGKSRVVTMGSYGIGVTRV 470

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA+ E++ D KG+ WP  +APF + ++     D    +A   + A L   G DV +DD 
Sbjct: 471 MAALAEANCDDKGLSWPAGIAPFDVHVLA-TGKDNAVFEAAASLAAALDAAGLDVVFDDR 529

Query: 385 GE-QIGSQFAVAD-------------LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            +   G +FA  +             L                  VE++ R TG   ++ 
Sbjct: 530 RKVSAGVKFADFELVGVPLGVVVGRGLK--------------TGNVEVRVRGTGESFEVP 575

Query: 431 LEEVINYASHR 441
           ++         
Sbjct: 576 VDAAAARVVEL 586


>gi|187918575|ref|YP_001884138.1| threonyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|238689297|sp|B2S162|SYT_BORHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119861423|gb|AAX17218.1| threonyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 583

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 162/446 (36%), Gaps = 42/446 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E  R D      +L L +  +H+    G+  + P G +    +    REE  
Sbjct: 172 KAYLKLREEIKRRDHRKLGRELDLFS--VHEDIGPGLIFFHPNGARIRAIIEDFWREEHF 229

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  + LW  SG  D Y + M    + +       P +      I+ +  
Sbjct: 230 KNGYDVLFTPHIGKSCLWETSGHLDFYKESMFEKMEMDKSNYYVKPMNCPFHIAIYNTGK 289

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LPF + ++   +R E      G MR R F   DA+      E  K    ++    
Sbjct: 290 HSYRDLPFRWAELGTVYRYEKIGALHGTMRVRGFTQDDAHIICA-YEQVKSEVQEVLRFA 348

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++++ G   +     + P                  +    KD  +  +        D
Sbjct: 349 LYMWNQFGFADLKAYLSTKP-----------------EKAVGDKDDWEMSVKVLEEALID 391

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     I E   A Y       + K+ DSL    ++S    +    F    ++      T
Sbjct: 392 LNIAYDIDEGGGAFYGPKI---DLKIIDSLGREWQMSTIQFD----FNLPERF----KMT 440

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DGK+     +    +G++     ++   + G   +W   +AP ++ +I +     V
Sbjct: 441 YTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPVW---LAPLQVIIIPVNN---V 494

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +I +     G  +  D D   ++ ++         P   I+G K V + K+ I+
Sbjct: 495 VEEYALEILSLFKNEGIRIKLDNDCNMRMNAKIRQYQSKKVPYMFIIGEKEVVEGKISIR 554

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       + L+E + +   +  N 
Sbjct: 555 TRTNDQINGLELKEALEFVRLKVKNK 580


>gi|73981321|ref|XP_860741.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 4
           [Canis familiaris]
          Length = 695

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 155/461 (33%), Gaps = 85/461 (18%)

Query: 8   LPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E   +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R 
Sbjct: 290 LRAWEEWKGEAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRR 349

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----------------ADRNDKAMIYGP 108
           G  E+  PTL SA LW  SG ++ Y ++M  L                   +   +   P
Sbjct: 350 GFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTSHSTDTLALKP 409

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      +F    +S+R LP       +  R E      G+ R R F   DA+ F   P
Sbjct: 410 MNCPAHCLMFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIFCA-P 468

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  +            ++  LG     +   + P G         L D  E         
Sbjct: 469 DQLEEEIQGCLDFLRSVYAVLGFSFR-LALSTRPSGFLGE---SCLWDQAE--------- 515

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                                               +  L D+L    +     ++    
Sbjct: 516 ----------------------------------QIDVHLHDALGRPHQCGTIQLD---- 537

Query: 288 FYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +KG  G  +  V +    +G++  +  V+  S+ GK   WP  ++P
Sbjct: 538 FQLPLRF----DLQYKGQAGVLERPVLIHRAVLGSVERMLGVLAESYGGK---WPLWLSP 590

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVI 405
           F++ +I + A  +   +   +   RL   G     D D G  +  +   A L  +  Q +
Sbjct: 591 FQVVVIPVGAEQE---EYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFV 647

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           VG K  S   V I+ R      +  L E +        N R
Sbjct: 648 VGQKEQSKKTVNIRTRDNRQLGERDLTEAVQRLLE-LQNTR 687


>gi|288920333|ref|ZP_06414645.1| threonyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288348281|gb|EFC82546.1| threonyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 658

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +    +   G+  + P G      +    R      
Sbjct: 247 EYQHRLAEAEKRDHRRLGAELDLFS-FPTEIGPGLAVFHPKGGAIRTVMEDYSRRRHIEA 305

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIK 123
           G   ++ P +  +DL+  SG  D +   M               P +  +   IFRS  +
Sbjct: 306 GYEFVNTPHITKSDLYEISGHLDWFADGMYPPMQLDGGADYYLKPMNCPMHILIFRSRGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R     DA+ F    E      + +    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAR-EQLPEELDSVLKFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +    GL+   +   + P G    S E    A     +                     
Sbjct: 425 GLLRDYGLEDFYLELSTRPEGKAIGSDEEWAEATELLREAAS------------------ 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +  +       A      + +  D++    ++S   ++    F    ++      T
Sbjct: 467 --KQDLELVMDEGGGAFYGPKISVQAKDAIGRTWQLSTIQVD----FQLPQRF----DMT 516

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++ ADG       +     G +    A++   + G     P  +AP ++  I I   D+ 
Sbjct: 517 YQAADGTRQRPFMIHRALFGTIERFFAILLEHYAGA---LPPWLAPVQVVGIPIT--DEH 571

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                + + A+L + G  V  D   +++  +   A     P  ++ G + VS   V  + 
Sbjct: 572 VPYLAD-VAAKLRERGIRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDEDVSKGAVSFRF 630

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R    R  + ++E +          
Sbjct: 631 RDGTQRNGVPVDEAVAEILDVVERR 655


>gi|332678669|gb|AEE87798.1| Prolyl-tRNA synthetase Bacterial type [Francisella cf. novicida
           Fx1]
          Length = 565

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 116/296 (39%), Positives = 179/296 (60%), Gaps = 8/296 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                  + S N+I +  T        +  E  FD     K +  +  E G+ F  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAE-GNFFAL 294



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K       GIEVGHIF     YS PM
Sbjct: 364 DDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           +A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I    
Sbjct: 424 NANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +E
Sbjct: 484 SDKVKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIE 543

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
            K+R T  ++++++ E+I    
Sbjct: 544 YKNRKTQEKQEITIAELIKILK 565


>gi|332184487|gb|AEE26741.1| Prolyl-tRNA synthetase Bacterial type [Francisella cf. novicida
           3523]
          Length = 565

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/286 (39%), Positives = 176/286 (61%), Gaps = 7/286 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLRDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNIMYTT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                  ++S N I +  T        + N+  FD     K +  +
Sbjct: 240 KPDLSKRVVSQNLITKIHTPNIKTIDKLCNQMNFDIKQTIKTMIIK 285



 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 3/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
            D     ++           +D+ N    D  P+ K       GIEVGHIF     YS P
Sbjct: 363 QDDYHFTNVNWDRDVTNYQVADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKP 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           M+A     DGK   + MG YG G  RV+AA IE SHD  GIIWP+++AP++++++ I   
Sbjct: 423 MNANIIDQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDQNGIIWPEAIAPYQVAILPINYN 482

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +
Sbjct: 483 KSDKVKEVADKLYQDLLTNGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLI 542

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K+R T  ++++++ E+I    
Sbjct: 543 EYKNRKTQEKQEITVTELIEILK 565


>gi|227833360|ref|YP_002835067.1| Prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184346|ref|ZP_06043767.1| prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|254782894|sp|C3PH25|SYP_CORA7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227454376|gb|ACP33129.1| Prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 589

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/223 (43%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG +A+  +  +IR+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRAMRKIEDVIRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  EM  P L   + + ES R+  YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  NAIGGQEMLFPALLPREPYEESNRWTEYGDNLFRLKDRKGADMLLGPTHEEMFTTAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYARHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             IF RL +     +A SG +GG  S EF+ +++ GE     +
Sbjct: 184 QNIFDRLEIDYAICKATSGAMGGSASEEFLAVSEVGEDTFVRA 226



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +      RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A + 
Sbjct: 417 PNGQGTLTLERGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSYGIGVTRMLAVLA 476

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E  HD KG+ WP +VAP+++ +  +   D    +A +K+   L + G +V +DD  +   
Sbjct: 477 EQRHDEKGLNWPVAVAPYQVHV-AVANKDAAALEAGQKLVEDLDRAGIEVLYDDRPKVSP 535

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G +F  A+LLG P   I+G +  +D  +E++ R  G   ++  + +++  +    
Sbjct: 536 GVKFKDAELLGMPFIAILG-RAFADGIIELRIRG-GETREVPADSIVDTLTELIR 588


>gi|224438525|ref|ZP_03659445.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313144952|ref|ZP_07807145.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313129983|gb|EFR47600.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 603

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 156/446 (34%), Gaps = 46/446 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      ++ L T    +   G+  WLP G +   N+  ++    N  G
Sbjct: 198 YLFAIEEAKKRDHRKLGQEMGLFT-FDEEIGAGLPIWLPKGARLRQNLERLLTIALNERG 256

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W +SG YD+Y + M      +++     P +      +++S  +SY
Sbjct: 257 YEPVRGPEILKSDVWKKSGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSSPRSY 315

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  FY+  +  R E      G++R REF   DA+ F  T    K   N +      I
Sbjct: 316 RELPLRFYEYGIVHRHEKSGVLHGLLRVREFTQDDAHIFCQT-NQIKDEVNHIISFTKSI 374

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                  +  M   + P   IG D   E    A     +       +D    +      D
Sbjct: 375 LDAFNF-AYEMELSTRPDKSIGNDGVWESATNALKNALEENKIAYQIDEGGGAFYGPKID 433

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I   +++                               R  + G I           + +
Sbjct: 434 IKITDAL------------------------------KRKWQCGTI-QVDMNLPERFALS 462

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +  +   V +    +G+     A++     G+  ++   +AP ++ LI I      
Sbjct: 463 YTDENNAQVQPVMIHRAILGSFERFVAILTEHFAGEFPLF---IAPTQVILIPIG---DA 516

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   + K+G      D  E +  +  +A+    PL V++G+K V    + I+ 
Sbjct: 517 QLGYARELRNEIIKIGGYAEIMDKNESLNKKIRLAEKQKVPLIVVIGAKEVERKILAIRD 576

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R    +  +S  E I     +    R
Sbjct: 577 RREKAQYGLSQAEFITTLKTKIGEIR 602


>gi|56708459|ref|YP_170355.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670930|ref|YP_667487.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457616|ref|ZP_03666089.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371083|ref|ZP_04987085.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875304|ref|ZP_05248014.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81820763|sp|Q5NF37|SYP_FRATT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123359400|sp|Q14GJ0|SYP_FRAT1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56604951|emb|CAG46045.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321263|emb|CAL09428.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569323|gb|EDN34977.1| hypothetical protein FTBG_00840 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841303|gb|EET19739.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159660|gb|ADA79051.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 565

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/285 (38%), Positives = 175/285 (61%), Gaps = 5/285 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK-----DFMDFPIPSE 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  +  S        ++    ++
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGEDIICYSNGSDYAANIELATYAK 240

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +     + S N+I +  T        +  E  FD     K +  +
Sbjct: 241 SDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIK 285



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K       GIEVGHIF     YS PM
Sbjct: 364 DDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           +A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I    
Sbjct: 424 NANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +E
Sbjct: 484 SDKIKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIE 543

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
            K+R T  ++++++ E+I    
Sbjct: 544 YKNRKTQEKQEITIAELIKILK 565


>gi|294655282|ref|XP_002770111.1| DEHA2B10252p [Debaryomyces hansenii CBS767]
 gi|199429831|emb|CAR65481.1| DEHA2B10252p [Debaryomyces hansenii]
          Length = 733

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 157/447 (35%), Gaps = 41/447 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +  L T   ++ S G   WLP G +  + +  ++R+E  + G 
Sbjct: 314 LKFLKEASERDHRRIGKEQELFT--FNEMSPGSAFWLPHGTRIYNTLTDLMRKEYRQRGY 371

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + ++ LW  SG + +Y + M        +     P +      +F+S  +SYR
Sbjct: 372 DEVITPNMYNSKLWETSGHWGNYKENMFSFEVEK-ETFGLKPMNCPGHCLMFKSRERSYR 430

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+EL     G+ R R F   DA+ F  T E  +     +F    +I+
Sbjct: 431 ELPWRVADFGVIHRNELSGALSGLTRVRRFQQDDAHIF-CTQEQIESEIGGVFDFLQKIY 489

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   M   + P                  + +           +   +  +    
Sbjct: 490 GVFGFEF-KMELSTRP------------------EKYVGDIETWNNAEANLENALNTFLG 530

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E      A      +  + D+L    + +   ++    F    ++ L   A     
Sbjct: 531 KGKWELNPGDGAFYGPKIDIMISDALKRWFQCATIQLD----FQLPNRFELEYKAETNDK 586

Query: 306 DGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  V +    +G++  + A++   + GK   WP  ++P +I ++ +        + 
Sbjct: 587 SNTIGRPVMIHRAILGSVERMTAILTEHYKGK---WPFWLSPRQILVVPVGVK---YFEY 640

Query: 365 CEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            + +  +L+K  G     D  G  +  +     +  +    IVG +      V +++R  
Sbjct: 641 AQSLQNKLNKEYGFYADVDVSGNTLQKKVRTGQVYKYNFIFIVGEQEQEQQGVNVRNRDI 700

Query: 424 GIRE----DMSLEEVINYASHRFSNNR 446
              +     +  ++V+          R
Sbjct: 701 QEEQGKNDMVKFDDVVQQLIKLREEMR 727


>gi|312195608|ref|YP_004015669.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226944|gb|ADP79799.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 662

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 137/438 (31%), Gaps = 40/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G   ++ 
Sbjct: 258 EAEKRDHRRLGAELDLFS-FPTELGPGLAVFHPKGGAIRTVMEDYSRRRHIEAGYEFVNT 316

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P +  + L+  SG  D +   M               P +  +   IF+S  +SYR LP 
Sbjct: 317 PHITKSTLYEISGHLDWFADGMYPPMSLDGGTDYYLKPMNCPMHILIFKSRGRSYRELPL 376

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R R     DA+ F    +      +      L +    G
Sbjct: 377 RLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAR-DQLPEELDSTLKFVLGLLRDYG 435

Query: 190 LKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   + P G    + E    A +   +    +D      P               
Sbjct: 436 LTDFYLELSTRPEGKAIGTDEEWEQATSLLREAAEKQDLELVMDPGGG------------ 483

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + +  D++    ++S   ++    F    ++       ++ ADG 
Sbjct: 484 --------AFYGPKISVQAKDAIGRTWQLSTIQVD----FQLPQRF----DMEYQAADGT 527

Query: 309 DH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +     G +    A++   + G     P  +AP ++  I I           + 
Sbjct: 528 RQRPFMIHRALFGTIERFFAILLEHYAGAM---PPWLAPVQVVGIPIT---DEHVPYLKD 581

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A+L+  G  V  D    ++  +   A     P  +I G+  V+   V  ++R    R 
Sbjct: 582 VAAKLTAKGIRVEVDASDNRMQKKIRDAQKQKVPYMLIAGADDVAKDAVSFRYRDGTQRN 641

Query: 428 DMSLEEVINYASHRFSNN 445
            + ++E +          
Sbjct: 642 AVPVDEAVAEILDAVERR 659


>gi|203284615|ref|YP_002222355.1| threonyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|238690570|sp|B5RMR3|SYT_BORDL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|201084058|gb|ACH93649.1| threonyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 583

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 161/445 (36%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L + +E   RD      +L L +    +   G+  + P G +    +    REE  +
Sbjct: 172 KAYLKLQEEIKKRDHRKLGRELNLFSVH-DEIGPGLIFFHPHGARIRALIENFWREEHFK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y + M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWETSGHLDFYKESMFEKIEMDRSDYYVKPMNCPFHIAIYNTDKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G MR R F   DA+    T E       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGAIHGTMRVRGFTQDDAHII-CTYEQVNFEVREVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++++ G  ++     + P       +   +A     +                      
Sbjct: 350 DMWNKFGFTNLKAYLSTKPEKAVGDDDDWQMAVKVLEKALID------------------ 391

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              N   +      A      + K+ DSL    ++S    +    F    ++      T+
Sbjct: 392 --FNIDFDIDEGGGAFYGPKIDLKIIDSLGRAWQMSTIQFD----FNLPVRF----KMTY 441

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DGK+     +    +G++     ++   + G   +W   +AP ++ +I + +   + 
Sbjct: 442 TAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPVW---LAPLQVVIIPVNS---IV 495

Query: 362 RDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   ++ +R    G  + +D+    ++ ++         P   I+G + V + K+ I+ 
Sbjct: 496 EEYALEVLSRFQNEGIRIKFDNYCNMRMNAKIRQYQSKKVPYMFIIGEREVVEGKISIRT 555

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + L+E + +   + SN 
Sbjct: 556 RTNEQINGLELKEALEFVKLKISNK 580


>gi|81428868|ref|YP_395868.1| prolyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|114152205|sp|Q38W72|SYP_LACSS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78610510|emb|CAI55561.1| Prolyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 569

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 148/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P  AE  SH++MLR G IHQ S G+YS+LPL  + L+N+ AII++E
Sbjct: 1   MKQSKLFIPTLKEVPNSAEAKSHRMMLRAGYIHQVSAGVYSYLPLAYRVLENIQAIIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A++M +P +  A+LW ESGRY +YG  + +  DR+ +  I GPTHEE   D+ R+
Sbjct: 61  MSKIDAVQMQMPGILPAELWEESGRYATYGPNLFKFKDRHSRDFILGPTHEETFADLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP T YQIQ K+RDE RPR+G++R REF+M+DAYSF         ++ +M  +
Sbjct: 121 NIKSYKKLPLTLYQIQTKYRDEDRPRYGLLRGREFIMQDAYSFSANEADLDTTFQQMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    +  ++G +GG  S EF  +A+ GE  +  S       
Sbjct: 181 YTNIFERCGLDFRAIVGDAGAMGGKDSMEFSAIAEIGEDTIVYSDQSDYAA 231



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--K 275
           E     +   ++  + +     +      ++  +     A  +D+   +  ++ P+   K
Sbjct: 340 EDVQIVADYSVEALVNAVVGANEADHHFLNVNSKRDFNVADYADLRFVQEGETAPDGEGK 399

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIE+GHIF  GT+Y+    ATF   +G+   + MGSYGIG  R+++A+ E   D 
Sbjct: 400 LQFTKGIEIGHIFKLGTRYTEQFGATFLDENGRAKPIIMGSYGIGVSRLLSAITEQQADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++WP ++AP+ + ++ +   D    +  E+I   L + G  V  DD  E+ G +FA +
Sbjct: 460 NGLVWPSAIAPYDLHVVPVNVKDDAQVELAEQIEGLLEEAGYSVLVDDRKERAGVKFADS 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G P+++ VG K   +  VE+K R TG   ++  +E+IN  S   ++ +
Sbjct: 520 DLIGLPIRITVGKKAAEE-IVEVKLRKTGETLEVKKDELINSLSILLASEK 569


>gi|255323684|ref|ZP_05364814.1| threonyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255299398|gb|EET78685.1| threonyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 606

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 158/445 (35%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  + I++E   RD      ++ L T    +   G+  WLP G +    +  I+ +    
Sbjct: 199 KEHIRIIEEAKKRDHRKLGVEMKLFT-FDDEVGGGLPIWLPNGGRLRSKLEQILYKAHRD 257

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD+W +SG Y +Y + M      ++      P +      +++S I+
Sbjct: 258 RGYEPVRGPELLKADVWKKSGHYANYKENMY-FTTIDEAEYGIKPMNCVGHIKVYQSDIR 316

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   D++ F + P   K +  ++     
Sbjct: 317 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCM-PSQIKENILEILKFAG 375

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +I    G     M   + P       E    A     +      F           +   
Sbjct: 376 KIMENFGFHY-EMEISTKPAKAIGGDEIWETATKALKEALDENGFKYGIDEGGGAFYGPK 434

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 435 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPERFDL 464

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  A+ +    V +    +G+      ++     G+    P  VAP ++ ++ I     
Sbjct: 465 GYIDANNERQQPVMLHRALLGSFERFIGILIEHTGGE---LPFFVAPTQVVIVPI---SD 518

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  + +   L K+G D       E +  +   A+    P+  ++G   V++S + ++
Sbjct: 519 AHLDYAKTVAKELRKIGVDSEIASKNESLNKRIRTAEKQRVPMIAVLGDNEVANSAIALR 578

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R T  ++DM L+E +     + + 
Sbjct: 579 DRTTREQKDMKLDEFVGLLKSKLAE 603


>gi|134301543|ref|YP_001121511.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166980125|sp|A4IWT9|SYP_FRATW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134049320|gb|ABO46391.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 565

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/286 (39%), Positives = 175/286 (61%), Gaps = 7/286 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                  + S N+I +  T        +  E  FD     K +  +
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIK 285



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K       GIEVGHIF     YS PM
Sbjct: 364 DDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           +A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I    
Sbjct: 424 NANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +E
Sbjct: 484 SDKIKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIE 543

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
            K+R T  ++++++ E+I    
Sbjct: 544 YKNRKTQEKQEITIAELIKILK 565


>gi|72162507|ref|YP_290164.1| threonyl-tRNA synthetase [Thermobifida fusca YX]
 gi|123747139|sp|Q47N28|SYT_THEFY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71916239|gb|AAZ56141.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermobifida
           fusca YX]
          Length = 659

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 147/447 (32%), Gaps = 37/447 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L +    +   G+  + P G      +    R     
Sbjct: 247 KSYLTMLEEAAKRDHRKLGVELDLFS-FPDELGSGLAVFHPKGGVVRKVMEEYSRRRHEE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +  A L+  SG   +Y   M                +  +   I+RS  +
Sbjct: 306 AGYQFVNTPHISKAGLFETSGHLPNYADAMFPPIQFEGADYYLKAMNCPMHNLIYRSRGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      +++    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTKEQMPDELDRLLTFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +     D S +FI      E               +        
Sbjct: 425 DLLRDYGLSDFYLELSTR----DDSPKFIGEPQEWE--------------EATEILRQAA 466

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              N  +       A      + +  D++    ++S   ++                  +
Sbjct: 467 QKQNLELVMDAGGAAYYGPKISVQAKDAIGRTWQMSTIQVDFQQP--------KRFELEY 518

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG +   V +     G++    AV+   + G    W   +AP ++  I I +     
Sbjct: 519 QAADGSRQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQVVGIPIAS---EH 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +  RL + G  V  D   +++  +   A     P  ++ G   VS   V  ++R
Sbjct: 573 VPYLEDVARRLREHGVRVEVDASDDRMQKKIRNAQKQKIPFMLLAGDNDVSKGAVSFRYR 632

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
                  + +++ I          R V
Sbjct: 633 DGSQNNGVPIDKAIEEILTVIRERRQV 659


>gi|241668104|ref|ZP_04755682.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876639|ref|ZP_05249349.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842660|gb|EET21074.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 565

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 155/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+P+G K L  +  I+REE
Sbjct: 1   MKATQTLIATTKELPKEAVLTSHQYMLKAGLIKKLASGIYTWMPIGLKVLQKIQNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSVLPSELLQETHRWDKFGPELLKLKDRHERDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +   ++YNKM  +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLHNTYNKMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I  ++GL   P+RA++G IGGD SHEF VLA+ GE  +  S       
Sbjct: 181 YCNILDKIGLVYRPVRADTGAIGGDNSHEFQVLANAGEDIICYSNSSDYAA 231



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 3/208 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGT 292
                +D     ++           +D+ N    D  P+N        GIEVGHIF    
Sbjct: 358 CCGANEDDYHFTNVNWDRDITSYQIADIRNVVTGDISPDNNGTLELTNGIEVGHIFELED 417

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            YS PM+A     DGK   + MG YG G  RV+AA IE SHD  GIIWP+++AP++++++
Sbjct: 418 VYSKPMNANIISQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPEAIAPYQVAIL 477

Query: 353 NIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            I     +  +   +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +
Sbjct: 478 PINYNKSESVKQTADKLYQELLAKGIDVILDDRGARPGVMFADADLIGYSHHVVIGDRLL 537

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               +E K+R T  +++++LE++++  +
Sbjct: 538 EQGLIEYKNRKTQEKQEITLEKLLDILA 565


>gi|113955222|ref|YP_731224.1| prolyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031649|sp|Q0I8J8|SYP_SYNS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113882573|gb|ABI47531.1| prolyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 598

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/237 (46%), Positives = 148/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIAS +L++R G I +   GIY++LPL  + L  V  I+REE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASQQLLIRGGFIRRVGSGIYAYLPLMWRVLQRVMRIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA+E  +P LQ A+LW +SGR+  Y      M  L DR ++++  GPTHEEV+T++
Sbjct: 61  MNQIGALETLLPQLQPAELWEKSGRWQGYTAGEGIMFHLEDRQERSLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF          Y +M
Sbjct: 121 ASDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHGDEGDLARMYEEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y R+F R GL ++ + A+SG IGG  S EF+V AD GE  +  S D        
Sbjct: 181 EKAYTRVFQRCGLTAVGVDADSGAIGGAASQEFMVTADAGEDLILISPDGDYAANQE 237



 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 112/246 (45%), Gaps = 4/246 (1%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IG DLS   +  A + + + +   D     +       +                   
Sbjct: 346 GSIGPDLSDHSLAGARSWKERFYKLADTTAAELERFVCGANTSNEHRWGASWSDLGTIPA 405

Query: 260 SDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+ N K  D     PE      RGIEVGHIF  G KYSL M A     +GK  ++ MG 
Sbjct: 406 MDLRNAKAGDHCVHRPEQSLEERRGIEVGHIFQLGRKYSLSMGAQITTKEGKQEHLWMGC 465

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD  GIIWP S+APF++ ++     D+V     E+IY  L   G
Sbjct: 466 YGIGISRLAQAAVEQHHDDAGIIWPLSIAPFQVIVVVANVQDEVQMALGEEIYNELLASG 525

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD GE+ G +F  ADL+G P +V+VG +  ++  VE+  R       +S  E I+
Sbjct: 526 IDVLLDDRGERAGVKFKDADLIGIPWRVVVG-RAAAEGNVELVKRSERDANVLSRAEAIS 584

Query: 437 YASHRF 442
                 
Sbjct: 585 SLLEAI 590


>gi|297626431|ref|YP_003688194.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922196|emb|CBL56764.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 680

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 150/460 (32%), Gaps = 59/460 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      + + I +     G
Sbjct: 245 YQTRMAEAAKRDHRKLGQELDLFS-FPEEIGPGLVVFHPKGGILRHEIESYITKRHIDAG 303

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              +  P +   DL+  SG    Y   M      +++                   +  +
Sbjct: 304 FDLVDTPIISKGDLFHTSGHLPYYADTMFPPMTVDEEVDAEGNVRHQGQEYYLKAMNCPM 363

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  FY++   FR E      G+ R R F   D++++  TPE +  
Sbjct: 364 HNLIFRSRGRSYRELPLRFYELGRDFRYEKSGVVQGLTRMRGFTQDDSHTY-CTPEQAGD 422

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKD 226
               +   +L I    GLK   +   +        IG D   E    A T   +V     
Sbjct: 423 EIKMLLGFFLSILRDFGLKEFYLELSTRDASSSKFIGSDEDWE----AATEILRVAAEST 478

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            ++                           A      + +  D+L    ++S    +   
Sbjct: 479 GLELVA-------------------DPGGAAFYGPKVSVQAKDALGRTWQMSTVQYDFNQ 519

Query: 287 IFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              FG +Y+          DG     V +    +G++     V+   + G    W   ++
Sbjct: 520 PARFGLEYTAA--------DGSHQQPVMIHCAKLGSVERFIGVLTEHYAGAFPAW---LS 568

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++  I +           + I  RL + G  V  D+  +++  +   A     P  +I
Sbjct: 569 PVQVVGIPVAG---EFNGYLDTIATRLREKGVRVEVDESDDRMQKKIRNATRQKVPFMLI 625

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            G K      V  + R       + +++ I+      ++ 
Sbjct: 626 AGEKDREAQAVSFRFRDGSQLNGVPIDDAIDRIVEHITSR 665


>gi|262202081|ref|YP_003273289.1| prolyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085428|gb|ACY21396.1| prolyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 576

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 174/385 (45%), Gaps = 29/385 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+++P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++REE +
Sbjct: 1   MSTLFLRTLRDDPADAEVPSHKLLVRGGYVRRAAPGVYTWLPLGLRVLKAIENVVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+ +P L   D +  +GR+  YG  + RL DR    M+ GPTHEE+  ++ +   
Sbjct: 61  AIGAQEILLPALLPRDPYETTGRWTEYGDALFRLKDRKGADMLLGPTHEELFANLVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFDL  +G K SY     +Y 
Sbjct: 121 SSYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDAYSFDLDDDGLKVSYQAHREAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R+F RLG+K + + A SG +GG  S EF+  ++ GE       +                
Sbjct: 181 RLFARLGVKYVIVAATSGAMGGSASEEFLAESEVGEDTFVRCLESGYAA----------- 229

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A  +       FD LP          +   I       +  +   F
Sbjct: 230 -----------NVEAVITPAPEPIPFDGLPVATTYD--TGDTPTIDTLVAWANDALDGEF 276

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            GAD   + +       G   ++   +    +        SV P ++ L  +   D    
Sbjct: 277 TGADTLKNVLVKVREPGGDWELLGVGVPGDREVDFKRLEASVEPAEVEL--LTEADFAAN 334

Query: 363 DACEKIY---ARLSKVGCDVFWDDM 384
               K Y     L   G     D  
Sbjct: 335 PFLVKGYIGPKGLQDNGVRYLVDPR 359



 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 4/177 (2%)

Query: 264 NEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  D  P+ K    SA+GIE+GHIF  G KY+        G  GK   + MGSYG+G 
Sbjct: 396 EVRDGDPSPDGKGPLVSAKGIEIGHIFQLGQKYTDAFEVDVLGESGKPVRLTMGSYGVGV 455

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+VA + E  HD KG+ WP  VAPF + L+ I   D        ++   L   G  V  
Sbjct: 456 SRLVAVIAEQCHDDKGLRWPREVAPFAVHLV-IANKDDAAVTGAGELAEDLDAAGVSVLL 514

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           DD     G +F  A+LLG P  V+VG +  ++  +EI+ R TG   +++++  ++  
Sbjct: 515 DDRKASPGVKFKDAELLGMPTVVVVG-RGYANGTIEIRDRFTGETTEVAVDSAVDAI 570


>gi|257459979|ref|ZP_05625083.1| threonyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257442420|gb|EEV17559.1| threonyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 607

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 151/448 (33%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L +L+E    A+   H+ +           Q   G+  WLP G +    +   +  +
Sbjct: 200 KKHLTMLEE----AKKRDHRKLGTEMKFFTFDEQIGAGLPIWLPAGTRMRIKLEGRLYRQ 255

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +  +D W  SG Y +Y + M       ++     P +      +++S
Sbjct: 256 LRKRGYEPVRGPEILKSDAWKISGHYSNYKENMY-FTTIEEQEYGIKPMNCVGHIKVYQS 314

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I+SYR+LP  F +  +  R E      G+ R REF   DA+ F + P   K +  ++  
Sbjct: 315 EIRSYRDLPLKFCEYGVVHRHEKSGVLHGLFRVREFTQDDAHLFVM-PSQIKENVYEILD 373

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +    G +   +   + P       E   +A          K             +
Sbjct: 374 FVELLMKAFGFEY-ELEISTKPQKAVGDDEVWDIATKALKDALDEKGLKYGLDEGGGAFY 432

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I +                                  R  + G +      ++LP  
Sbjct: 433 GPKIDIKITDA---------------------------LGRKWQCGTV---QVDFNLPAR 462

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   +  K   V +    +G+      ++     G+   W   + P ++S++ I  
Sbjct: 463 FELGYIDENNEKKQPVMLHRAILGSFERFVGILLEHTAGELPFW---ICPTQVSIVPIG- 518

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      ++I   L     D    D  E +  +   A+    PL +++G   VS   V
Sbjct: 519 --EAHASYAKEILNLLRAADIDGEILDRNETLNKRIRTAEKQKVPLIIVLGDNEVSARSV 576

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R    + ++ L+E +N+   + + 
Sbjct: 577 ALRDRRAREQRNLGLDEFLNFVKAKLNE 604


>gi|187931393|ref|YP_001891377.1| prolyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|226701291|sp|B2SFQ6|SYP_FRATM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187712302|gb|ACD30599.1| prolyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 565

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/286 (39%), Positives = 176/286 (61%), Gaps = 7/286 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGED-IICYSNGSDYAANIELATYA 239

Query: 241 D------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                  + S N+I +  T        ++ E  FD     K +  +
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLYKEMSFDIKKTIKTMVIK 285



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K       GIEVGHIF     YS PM
Sbjct: 364 DDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDCKGTLELTNGIEVGHIFELEDVYSKPM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           +A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I    
Sbjct: 424 NANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNK 483

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G K +    +E
Sbjct: 484 SDKVKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDKLLEQGLIE 543

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
            K+R T  ++++++ E+I    
Sbjct: 544 YKNRKTQEKQEITIAELIKILK 565


>gi|312143811|ref|YP_003995257.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904462|gb|ADQ14903.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 652

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 151/447 (33%), Gaps = 35/447 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY     +   RD      +L L    + +  +G+    P G K +  +   + +E+ 
Sbjct: 229 LEKYLERREEAKKRDHNKLGRELDLFM-TVDEIGQGLPLLKPKGAKVVQILQRFVEDEEE 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRS 120
           + G      P +  +DL+  SG ++ Y   M  L D       M   P        I+ S
Sbjct: 288 KRGYQITKTPFMAKSDLYEISGHWEHYKDGMFILGDEEKDDNLMALRPMTCPFQFQIYNS 347

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP  + +    FR+E      G++R R+F + + +   +TPE  +  +  +  
Sbjct: 348 KLRSYRDLPIRYSETSSLFRNEASGEMHGLIRLRQFTISEGHLI-VTPEQLEEEFRGVID 406

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +   +G++             D         D      +           ++    
Sbjct: 407 LINYMMESIGIE-------------DDIWYRFSKWDPENKDKYIDNPEAWKDSQAKMKTI 453

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D +  +   E+     A      + +  +   +   +    I+    F    ++     
Sbjct: 454 LDNL--DMEYEEADGEAAFYGPKLDIQFKNVHGKEDTIITVQID----FALPERF----D 503

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   +  K H + +    IG      A++   + G    W   +AP +  +I +    
Sbjct: 504 MTYIDENNEKQHPIVIHRTSIGCYERTLAMLIEKYAGAFPTW---LAPVQAKIIPVSDD- 559

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +I   L      V  D   E++G +   A +   P  +IVGS+   +  V +
Sbjct: 560 --QLDYAYQIKKELEADDIRVEVDARTEKVGYKIREAQVEQVPYMLIVGSREEENGSVSV 617

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G      L E          N 
Sbjct: 618 RERREGDLGTSPLAEFKERILAEIENK 644


>gi|126659940|ref|ZP_01731064.1| prolyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126618804|gb|EAZ89549.1| prolyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 598

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/266 (40%), Positives = 152/266 (57%), Gaps = 3/266 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
                L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE N  G
Sbjct: 1   MLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREEMNAAG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A E  +P LQ ++LW ESGR+++Y K    M  L DR ++ +  GPTHEEV+T + +  I
Sbjct: 61  AQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQERELGLGPTHEEVITTVAKDMI 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY+ M  +Y 
Sbjct: 121 RSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNENEASLQKSYDAMDQAYR 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D        +       
Sbjct: 181 NIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTEDGKYAANVEKAVSLPKD 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLF 268
           +  +             + +     F
Sbjct: 241 VEQSPFTTYEKKETPDCNTIEKLCKF 266



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 1/217 (0%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           F   ++  ++  +    +   +                          SARGIEVGHIF 
Sbjct: 380 FVTGADEINYHIVGGNWNKDFKLPQLVCDIRTAMIGDRAIHDRSQTLASARGIEVGHIFQ 439

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GTKYS  M ATF   +G++  + MG YG+G  R+  A +E S+D  GIIWP ++AP+ +
Sbjct: 440 LGTKYSEAMGATFTDENGEEKPIVMGCYGVGVSRLAQAAVEQSYDKDGIIWPVAIAPYHV 499

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +I     D+   +  E +Y  L+K+G +   DD  E+ G +F  ADL+G P +V+ G +
Sbjct: 500 IIIVPNIKDKNQIEVAENLYNELNKIGIETMLDDRDERAGVKFKDADLIGIPYRVVTG-R 558

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +   KVE+  R +   +++ +  ++    +     +
Sbjct: 559 SLKAGKVEVVTRKSKESQEIEVTNLVETLHNWVEQAK 595


>gi|257784517|ref|YP_003179734.1| prolyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257473024|gb|ACV51143.1| prolyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 565

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/226 (47%), Positives = 151/226 (66%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  + P L+E+P +A +ASH+L+LR GMI + + G+YS+LPL  ++L  + AIIR+E +
Sbjct: 1   MSSLYAPTLKEDPAEAVLASHRLLLRAGMIRKTAAGLYSYLPLAWRSLLKIEAIIRDEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+ VP +  A+LW ESGR+D YG E++R+ DR+D+    GPTHEE  TD+ R+ +
Sbjct: 61  GIGAQEILVPIMTPAELWEESGRWDVYGDELMRMHDRHDRQFALGPTHEETFTDLIRNEL 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           KSY+ LP T YQIQ KFRDE RPRFG+MR REF+MKD YSF    E  +  Y++  V+Y 
Sbjct: 121 KSYKQLPVTLYQIQDKFRDERRPRFGLMRGREFIMKDGYSFSANQESLQECYDQEKVAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +  R  L+++ + A+SG IGGD S EF+ LA+ GE  +       
Sbjct: 181 NVCDRTRLRALQVVADSGQIGGDTSVEFMALAEAGEASLVYCDCGY 226



 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 30/287 (10%)

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--------GDLSHEFIVLADTGETQV 221
           ++H++ +  +         GL    ++   GP+G        GDLS E       G  + 
Sbjct: 301 AEHAFGEYHMMTDEELDEFGL----IKGFIGPVGLPEGIRVVGDLSLEDTQWWLCGANKA 356

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
               D ++     E  ++ D+++                    E            +ARG
Sbjct: 357 DYHLDHVELGRDFEINEWKDLVTS------------------QEGDICPECGLPLHAARG 398

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IEVG +F  GTKYS  ++ATF   +G+D  + MG YGIG  R++AAV+E  +D KGI WP
Sbjct: 399 IEVGQVFQLGTKYSSALNATFTDENGQDKPLVMGCYGIGVSRLLAAVVEQYNDEKGIKWP 458

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            SVAP+++S++ +   D    DA   +       G +   DD  E+ G +FA ADL+GFP
Sbjct: 459 VSVAPYEVSVLCLSNKDPEIWDAAGAVADACVAAGLETVVDDRVERPGVKFADADLIGFP 518

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            QVIVG K V++   E+K R TG R +++L+EV ++ + +    R +
Sbjct: 519 WQVIVGKKGVTNGIAEVKERATGERFEVALDEVASWLAEKILPEREL 565


>gi|223039114|ref|ZP_03609404.1| threonyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222879475|gb|EEF14566.1| threonyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 606

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 157/445 (35%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  + I++E   RD      ++ L      +   G+  WLP G +    +  I+ +    
Sbjct: 199 KEHIRIIEEAKKRDHRKLGVEMKLFA-FDEEVGGGLPIWLPNGGRLRSKLEQILYKAHRD 257

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD+W +SG Y +Y + M      ++      P +      +++S I+
Sbjct: 258 RGYEPVRGPELLKADVWKKSGHYANYKENMY-FTTIDEAEYGIKPMNCVGHIKVYQSDIR 316

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   D++ F + P   K +  ++     
Sbjct: 317 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCM-PSQIKENILEILKFAG 375

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +I    G     M   + P       E    A     +      F           +   
Sbjct: 376 KIMENFGFHY-EMEISTKPAKAIGGDEIWETATKALKEALDENGFKYGIDEGGGAFYGPK 434

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 435 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPERFDL 464

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  A+  +   V +    +G+      ++     G+    P  VAP ++ ++ I     
Sbjct: 465 GYIDANNERRQPVMLHRALLGSFERFIGILIEHTGGE---LPFFVAPTQVVIVPI---SD 518

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  + +   L K+G D       E +  +   A+    P+  ++G   V++S + ++
Sbjct: 519 AHLDYAKTVAKELRKIGVDSEIASKNESLNKRIRTAEKQRVPMIAVLGDNEVANSAIALR 578

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R T  ++DM L+E +     + + 
Sbjct: 579 DRTTREQKDMKLDEFVGLLKSKLAE 603


>gi|94968092|ref|YP_590140.1| prolyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
 gi|122986393|sp|Q1IST4|SYP_ACIBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94550142|gb|ABF40066.1| prolyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 587

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/230 (45%), Positives = 144/230 (62%), Gaps = 1/230 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHK ++R G I Q + GIYS+L LG ++++ +  I+REE 
Sbjct: 3   RWSKLFIPTLREAPADAEVASHKFLVRAGYIRQLAAGIYSYLFLGNRSMNKIIGIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ G  E  +P L   ++W  SGR+   G  M RL DR    +  G THEE+MT+I R  
Sbjct: 63  DKIG-QEYYLPALNPREIWEASGRWAVMGDNMFRLKDRKGAELCLGMTHEEIMTEIARKE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RPR G++R R+F+MKD+YSFD+   G   SY K   +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPRSGLLRVRQFIMKDSYSFDIDAAGLDISYQKHHDAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF R GLK + + A+SG +GG  S EF+V  D GE  V    +     
Sbjct: 182 CRIFDRCGLKYVVVHADSGAMGGSGSQEFMVYTDAGEDLVASCANCSYAA 231



 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 1/175 (0%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                +     + +E+GHIF  G KY+  M A     DGK+    MGSYGIG  R++ A 
Sbjct: 411 CPNCGHALKVGKTVEIGHIFKLGYKYTDAMGARVLDKDGKEVMPIMGSYGIGMERILTAS 470

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E S+D  G   P  +APF++ +      D+      E+I A+L   G DV  DD  E+ 
Sbjct: 471 VEQSNDDNGFWLPAQIAPFEVVVTPTNVSDEKLAKGAEEIAAKLEAAGFDVILDDRDERP 530

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G +F  ADL+G P+++ VG KFV   KVE+ HR T    D ++ E++   +    
Sbjct: 531 GVKFKDADLVGIPVRINVGKKFVE-GKVEVIHRSTRESLDATIPEIVEKIAAWLK 584


>gi|134102383|ref|YP_001108044.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915006|emb|CAM05119.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 574

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 135/219 (61%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            FL  L+E+P DAE+ SH+L++R G + +   GIYSWLPLG + L N+  I+R+E +  G
Sbjct: 1   MFLRTLREDPADAEVPSHRLLVRAGYVRRIGPGIYSWLPLGLRVLRNIEEIVRQEMDAIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   +    SY
Sbjct: 61  AQEIHFPALLPKEPYEATNRWTEYGPNLFRLKDRKGGDYLLGPTHEELFTLTVKGEYSSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           ++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG  +SY     +Y+RIF
Sbjct: 121 KDYPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDDEGLTNSYRLHRDAYIRIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            R+GL+ + + A SG +GG  S EF+  A TGE     S
Sbjct: 181 DRVGLRYVIVAATSGAMGGSASEEFLAEAPTGEDTFVRS 219



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 2/164 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+   S    G DGK   + MGSYG+G  R+VAA+ E SHD  G++
Sbjct: 412 RGIEIGHIFQLGRKYADAFSLDALGQDGKPKRITMGSYGVGVSRMVAAIAEQSHDELGLV 471

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAP  + ++ I   D+  R+  E++ A L   G  V  DD     G +FA A+L+G
Sbjct: 472 WPREVAPADVHVV-IAGKDESVREGAERLAADLDAAGVRVLLDDRNASPGVKFADAELVG 530

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  ++VG K ++   VE+K R +G RE++ ++  + +      
Sbjct: 531 VPTILVVG-KGLAKGVVEVKDRRSGDREEVPVDGAVEHLVSTIR 573


>gi|291545263|emb|CBL18372.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus sp.
           18P13]
          Length = 646

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 162/447 (36%), Gaps = 36/447 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L T  +    +G+   LP G + +  +   + +E+ R
Sbjct: 230 EAYLKQLEEAKLRDHNKLGRELELFT-TVDCIGQGLPIMLPKGARVIQLLQRFVEDEEQR 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSH 121
            G +    P +  +DL+  SG +D Y + M  L D   + +     P        +F + 
Sbjct: 289 RGYLLTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYQVFLNR 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +    FR+E      G++R R+F + + +   L PE  +  +      
Sbjct: 349 PRSYRDLPMRLGETSTLFRNEDSGEMHGLIRVRQFTISEGHLI-LRPEQLEDEFRGCLEL 407

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +   LGL              D+++ F    D   T+ +                  
Sbjct: 408 ANYMLTTLGLAD------------DVTYRFS-QWDPNNTEKYIGTPEQWDEAQGAMKKIL 454

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++          A      + ++ +   +   +    I+      FG +Y+     
Sbjct: 455 DHLGIH--YTIGIDEAAFYGPKLDIQIKNVHGKEDTLITIQIDQMLAQLFGMEYT----- 507

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                DG K     +    +G      A++   + G   +W   +AP ++ LI I     
Sbjct: 508 ---DVDGTKRRPYIIHRTSLGCYERTLALLIEKYAGAFPLW---LAPEQVKLIPIA---D 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G  +  DD  E++G +   A L   P  + +G   V    V ++
Sbjct: 559 RHMDYTLELARKLEAAGMRITVDDRAEKVGYKIRQAVLEKVPYMLTIGDNEVESKTVSVR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R  G    M+ + ++       +  +
Sbjct: 619 SRRDGDLGSMTQDALLAKLVEEVATKK 645


>gi|168070814|ref|XP_001786949.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660100|gb|EDQ48237.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 375

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 139/395 (35%), Gaps = 42/395 (10%)

Query: 8   LPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP G      +    RE Q + G 
Sbjct: 20  LHMLEEAKKRDHRKLGKELELF--MFSEEAPGMPFYLPKGMTVRTELEQFSRELQLQEGY 77

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG ++ Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 78  QEVRTPLMMNNRLWEQSGHWEHYKDNMY-FSEVDDATFALKPMNCPGHMLIFKNTLHSYR 136

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +     R E      G+MR R F   DA+ + + PE  +   N+      R++
Sbjct: 137 ELPIRMMEFGQVHRHEFSGALNGMMRVRTFCQDDAHLYVM-PEQIEDEINQAISLIGRMY 195

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P     S E    A+     V   +         +   +   I  
Sbjct: 196 DIFGFEY-KIELSTRPEDSMGSEELWDQAERALQNVLDRRGVQYRINEGDGAFYGPKIDF 254

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           + +                               R  + G I     +       T+ G 
Sbjct: 255 HILD---------------------------ALKRSWQCGTI-QLDFQMPEKFDLTYIGE 286

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D  K   V +     G++     ++   + G   +W   +AP ++ L+ +  H     D 
Sbjct: 287 DSLKHRPVVIHRAIYGSIDRFIGILTEHYAGAFPLW---LAPVQVKLLPVSDH---YADY 340

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
             ++ ++L   G  V  D   E++G +   A +  
Sbjct: 341 ALQVQSQLRAAGIRVETDLRSEKLGYKIREAQMEK 375


>gi|82750864|ref|YP_416605.1| prolyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|114152256|sp|Q2YXK5|SYP_STAAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|82656395|emb|CAI80814.1| prolyl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 567

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 161/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGTELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK+     
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSKESDYAA 231



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA       DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEF-NTKFDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ + +++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIADLMTVITNKYDNLK 567


>gi|154508918|ref|ZP_02044560.1| hypothetical protein ACTODO_01429 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798552|gb|EDN80972.1| hypothetical protein ACTODO_01429 [Actinomyces odontolyticus ATCC
           17982]
          Length = 677

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 154/461 (33%), Gaps = 47/461 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L   QE  ++AE   H+ +           +   G+  + P G      + + + 
Sbjct: 234 ASKDDLVAYQERIKEAERRDHRRLGAELDLYSFPEEIGPGLVVFHPKGGILRHEIESYVT 293

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRND--------KAMIY 106
           +     G   +  P +    L+  SG    Y   M        +R++        +    
Sbjct: 294 DRHKAAGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLVDEERDEDGNVTKAGQEYYL 353

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  FY++   +R E      G+ R R F   D++++  
Sbjct: 354 KAMNCPMHNLIFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-C 412

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           TPE +          +L I    GLK   +   +    G    +FI    + E     +K
Sbjct: 413 TPEQASEEIRTQIEFFLSILSAFGLKDFYLELSTRDEDGKKKDKFI---GSDEDWAAATK 469

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              D    +      D               A      + ++ D++    ++S    +  
Sbjct: 470 ALEDACAATGLDLVPDPGGA-----------AFYGPKVSVQVKDAIGRTWQMSTIQYDFN 518

Query: 286 HIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG +   V + S  +G++     V+   + G    W   +
Sbjct: 519 QPDR--------FDLEYTAADGSRQRPVMIHSAKLGSVERFIGVLTEHYAGAFPAW---L 567

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ LI +    +      + + A+L + G  V  D   ++ G +   A     P  +
Sbjct: 568 SPVQVRLIPVA---EAFDGYVKDVAAKLRERGVRVETDLSDDRFGKKIRNASKDKIPFTL 624

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           I G + V    V  + R       ++++  +          
Sbjct: 625 IAGGEDVEAGAVSFRLRDGSQHNGVAVDRAVELIVSHIEQR 665


>gi|119716597|ref|YP_923562.1| threonyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|166225470|sp|A1SJ90|SYT_NOCSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119537258|gb|ABL81875.1| Ser-tRNA(Thr) hydrolase [Nocardioides sp. JS614]
          Length = 668

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 150/452 (33%), Gaps = 40/452 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   I +   RD       L L +    +   G+  + P G      +   +R+   
Sbjct: 251 LEEHLHRIEEAERRDHRKLGRDLDLFS-FPDEIGSGLPVFHPKGGVIKRVMEDYVRQRHV 309

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +    L+  SG    YG+ M    D +         +  +   IFRS  
Sbjct: 310 EEGFEYVGTPHIAKEGLFYTSGHLPYYGEAMFPPLDVDGMDYRLKAMNCPMHNLIFRSRQ 369

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ R R F   D++S+ +T E +      +    
Sbjct: 370 RSYRELPLRLFEFGHVYRHEKSGVIHGLTRVRGFAQDDSHSY-VTKEQAPAEIKHLLDFC 428

Query: 182 LRIFHRLGLKSIPMRAESG----PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           L +F   GL    +   +     P     S E   +A      V  +      P P    
Sbjct: 429 LGLFRDFGLDDFYLELSTRDDSKPDKFIGSDEDWAVATKVLEDVCIASGLELVPDPG--- 485

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      + +  D++    ++S    +           +  
Sbjct: 486 -----------------GAAYYGPKVSVQARDAIGRTWQMSTIQYDFNQPS------ADR 522

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +  ADG +   V + S   G++     V+   + G     P  +AP ++  I I  
Sbjct: 523 FDLHYTAADGSRQQPVMIHSAKFGSIERFIGVLVEHYAGAF---PPWLAPVQVQAIPIA- 578

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D    +  R+   G  V  DD  +++  +   A LL  P  +I G   V+   V
Sbjct: 579 --ERHNDYLYDVAKRMQAQGLRVEVDDSDDRMQKKIRNAQLLKVPFMMIAGDDDVAAGAV 636

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             ++R       + L+E I   +   ++   V
Sbjct: 637 SFRYRDGRQDNGVPLDEAIRRVADAVASREQV 668


>gi|312966332|ref|ZP_07780558.1| prolyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312289575|gb|EFR17469.1| prolyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|323190405|gb|EFZ75680.1| prolyl-tRNA synthetase [Escherichia coli RN587/1]
          Length = 547

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/206 (52%), Positives = 145/206 (70%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+ +P +Q ++LW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVLMPVVQPSELWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            SHEF VLA +GE  V  S       
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDTSDYAA 206



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 341 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 401 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 460

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 461 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++++Y   +  
Sbjct: 521 YKYRRNGEKQLIKTGDIVDYLVKQIK 546


>gi|28378679|ref|NP_785571.1| prolyl-tRNA synthetase [Lactobacillus plantarum WCFS1]
 gi|254556877|ref|YP_003063294.1| prolyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300768192|ref|ZP_07078097.1| proline--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180820|ref|YP_003924948.1| prolyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|81840975|sp|Q88VK1|SYP_LACPL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28271515|emb|CAD64420.1| proline--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|254045804|gb|ACT62597.1| prolyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300494256|gb|EFK29419.1| proline--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046311|gb|ADN98854.1| prolyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 569

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 143/225 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH++MLR G I Q S G+Y++LPL  + L N+  IIR+E
Sbjct: 1   MKQSKLLIPTLKEVPNDAEALSHQMMLRAGYIRQISAGMYAYLPLAYRVLTNIEKIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EM VP +  A+LW  +GRY++YG E+ +L +R+D+  I GPTHEE  T I R 
Sbjct: 61  MEKIDAAEMLVPAVIPAELWKATGRYETYGPELFKLKNRHDREFILGPTHEETFTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K+RDE RPR+G++R REF+MKDAYSF         ++  M  +
Sbjct: 121 EIKSYKRLPLTLYQIQAKYRDEDRPRYGLLRGREFIMKDAYSFHADEASLDDTFQDMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R+GLK   +  + G +GG  S E+  +A  GE  +  S 
Sbjct: 181 YQNIFERVGLKFRSIIGDGGAMGGKDSREYSAIAPVGEDTIVYSD 225



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 2/211 (0%)

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
             N D     ++N   +     Y     V  E              +GIE+GHIF  GT+
Sbjct: 359 GANEDGHHFTNVNPERDFHAEAYVDIRFV-QEGELSPDGAGVLKFTKGIEIGHIFKLGTR 417

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  + A    A+G++  V MG YGIG  R+++A+ E   D  G+IWP ++APF + +I 
Sbjct: 418 YSKDLHAEVLDANGRNIPVIMGCYGIGVSRLLSAIAEQRADENGLIWPKAIAPFDVHVIP 477

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        +  +++ A+L   G +V +DD  E+ G +FA +DL+G P ++ +G K  S+
Sbjct: 478 VNPKKADQVEVADQVEAQLEAAGYNVLYDDRKERPGVKFADSDLMGIPARITIGKK-ASE 536

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             VEIK R TG   ++  EE+ N  +    N
Sbjct: 537 GIVEIKLRQTGETLEVKQEEIANNLAVLLKN 567


>gi|254382091|ref|ZP_04997453.1| prolyl-tRNA synthetase 1 [Streptomyces sp. Mg1]
 gi|194340998|gb|EDX21964.1| prolyl-tRNA synthetase 1 [Streptomyces sp. Mg1]
          Length = 565

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/230 (43%), Positives = 137/230 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P DAE  SHKL++R G + + S G+++WLPLG++ LDNV+ ++REE 
Sbjct: 8   RMSRLMAKTLREDPADAETLSHKLLVRAGYVRRSSAGVWTWLPLGKRVLDNVSRVVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEVSGRWSEYGDLLFRLKDRKGADYLLGPTHEEIFTLVVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD++ EG   SY     +Y
Sbjct: 128 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDVSDEGLAESYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RIF RLGL    + A SG +GG  S EF+  A  GE             
Sbjct: 188 RRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPSCDYAA 237



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 6/178 (3%)

Query: 265 EKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P         R IE+GHIF  G KY+        G +GK   V MGSYGIG  
Sbjct: 391 VEAGDPCPSCGAGLRLDRAIEIGHIFQLGRKYADAFGLDVLGREGKPVRVTMGSYGIGVS 450

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R VAA+ E + D +G+ WP  VAP  + ++   A   V     E   A LS  G  V  D
Sbjct: 451 RAVAALAEQTADERGLCWPAEVAPADVHVV--AAGKAVPLALAESAAAALSASGLRVLLD 508

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D  G   G +   A+L+G P  ++ G +   D  VE++HR TG RE+++L+E +   +
Sbjct: 509 DRAGLSPGVKLTDAELIGVPWILVAGRRS-GDGVVELQHRPTGTREELTLDEALARLT 565


>gi|297279894|ref|XP_002808285.1| PREDICTED: LOW QUALITY PROTEIN: threonyl-tRNA synthetase,
           mitochondrial-like [Macaca mulatta]
          Length = 669

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/462 (19%), Positives = 156/462 (33%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 237 LLSAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 296

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+   +    
Sbjct: 297 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPSGSDRPASSQSDDSTRHTTDILALK 356

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 357 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 416

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G                       
Sbjct: 417 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSG-----------------FLGDPC 457

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             D           +      +     A Y    DVH   L D+L    +     ++   
Sbjct: 458 LWDQAEQVLQRALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD--- 511

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 512 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 563

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I +    +   +   +    L   G     D D G  +  +   A L  +  Q 
Sbjct: 564 PFQVVVIPVGTEQE---EYAREAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQF 620

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 621 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNMR 661


>gi|294790672|ref|ZP_06755830.1| proline--tRNA ligase [Scardovia inopinata F0304]
 gi|294458569|gb|EFG26922.1| proline--tRNA ligase [Scardovia inopinata F0304]
          Length = 598

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 142/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG + L+ + AIIREE
Sbjct: 6   LRMSSLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + + 
Sbjct: 66  INAIGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K +Y +   +
Sbjct: 126 MYTSYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKAYLQERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIFHRL L  + + A SGP+GG  S EF+     GE     +     + + +
Sbjct: 186 YERIFHRLDLNYVIVHAVSGPMGGSESEEFLAPMPIGEDTFALAPSGKAWNVEA 239



 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 2/168 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  M       +G+   V MG YGIG  RV++ + E+ HD KG+I
Sbjct: 432 RGVEIGQVFQLGLKYSHAMGLKVLNKNGQAVPVWMGCYGIGVSRVMSCIAETHHDDKGLI 491

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLL 398
           WP ++AP ++ L+     D       + +  +L   G +V +DD      G +F  ++LL
Sbjct: 492 WPAAIAPAQVHLVA-TGKDDRAFHIADDLLHQLEGEGIEVLYDDRLKVSPGVKFKDSELL 550

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G PL ++VG   V++  VEI++R +G  + + LE+  +         +
Sbjct: 551 GMPLVLVVGRDAVNNGTVEIRNRRSGQVQIVPLEQAFHTVKETVGQLK 598


>gi|293192627|ref|ZP_06609581.1| threonine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292820134|gb|EFF79131.1| threonine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 677

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 154/461 (33%), Gaps = 47/461 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L   QE  ++AE   H+ +           +   G+  + P G      + + + 
Sbjct: 234 ASKEDLVAYQERIKEAERRDHRRLGAELDLYSFPEEIGPGLVVFHPKGGILRHEIESYVT 293

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRND--------KAMIY 106
           +     G   +  P +    L+  SG    Y   M        +R++        +    
Sbjct: 294 DRHKAAGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLVDEERDEDGNVTKAGQEYYL 353

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  FY++   +R E      G+ R R F   D++++  
Sbjct: 354 KAMNCPMHNLIFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-C 412

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           TPE +          +L I    GLK   +   +    G    +FI    + E     +K
Sbjct: 413 TPEQASEEIRTQIAFFLSILSAFGLKDFYLELSTRDEDGKKKDKFI---GSDEDWAAATK 469

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              D    +      D               A      + ++ D++    ++S    +  
Sbjct: 470 ALEDACAATGLDLVPDPGGA-----------AFYGPKVSVQVKDAIGRTWQMSTIQYDFN 518

Query: 286 HIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG +   V + S  +G++     V+   + G    W   +
Sbjct: 519 QPDR--------FDLEYTAADGSRQRPVMIHSAKLGSVERFIGVLTEHYAGAFPAW---L 567

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ LI +    +      + + A+L + G  V  D   ++ G +   A     P  +
Sbjct: 568 SPVQVRLIPVA---EAFDGYVKDVAAKLRERGVRVETDLSDDRFGKKIRNASKDKIPFTL 624

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           I G + V    V  + R       ++++  +          
Sbjct: 625 IAGGEDVEAGAVSFRLRDGSQHNGVAVDRAVELIVSHIEQR 665


>gi|283783528|ref|YP_003374282.1| proline--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441181|gb|ADB13647.1| proline--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 610

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 143/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIR+E
Sbjct: 6   LRMSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIRDE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR+    +  PTHEEV T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHQADYLLAPTHEEVFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+M+D YSF +  +G K +Y +   +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDGYSFSIDEDGLKSAYVEERAA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RLG+K + + A SGP+GG  S EF+     GE     +     + + +
Sbjct: 186 YARIFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGEDTFALAPSGKAWNVEA 239



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 443 RGVEIGQVFQLGLKYSKALGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLA 502

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     DQV  DA EK+   LSK G +V +DD  +   G +F  A+L+
Sbjct: 503 WPMAIAPAQVHVVA-TGKDQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELV 561

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL  + G   V++  +EI+ R     E + ++E       R S 
Sbjct: 562 GVPLIAVAGRDTVNNGTIEIRDRNGSNVEAVPVDEAAARIVERVSE 607


>gi|46204424|ref|ZP_00050025.2| COG0441: Threonyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 394

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 126/390 (32%), Gaps = 41/390 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD- 98
             W   G      + A +R         E++ P +    LW  SG +  Y + M      
Sbjct: 1   MFWHAQGWTVFQELIAYMRRRLKG-DYAEVNAPQILDKSLWETSGHWGWYRENMFAAQSA 59

Query: 99  ----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
                + +     P +      IF+  +KSYR+LP    +  +  R E      G+MR R
Sbjct: 60  GEEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVR 119

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  T +       K+    L  +   G   I ++  + P     S      
Sbjct: 120 GFTQDDAHIF-CTEDQLADECLKINDLILSTYADFGFDEILVKLSTRPEKRVGSDALWDH 178

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A+   T+V                   +  S   I         A      E +      
Sbjct: 179 AEAVMTRVL---------------AQIEEQSGGRIKTAVNPGEGAFYGPKFEYVL----- 218

Query: 274 NKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIE 330
            +    R  + G        ++LP    AT+  AD +     M      G+M     ++ 
Sbjct: 219 -RDAIGRDWQCGTT---QVDFNLPERFGATYIDADSQKKPPVMVHRAICGSMERFTGILI 274

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
               G   +W   +AP +I +  I +      D   ++   L + G  V  D   E+I  
Sbjct: 275 EHFAGHFPLW---LAPLQIVVATITS---EADDYAREVVRVLERAGLRVEADLRNEKINY 328

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           +     L   P+ + +G +   +  V ++ 
Sbjct: 329 KVREHSLAKVPVLLALGRREAEERTVSVRR 358


>gi|284031290|ref|YP_003381221.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810583|gb|ADB32422.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 673

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 148/455 (32%), Gaps = 51/455 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +    R+     G
Sbjct: 252 YLTRLEEAAKRDHRKLGTELDLFS-FPDEIGSGLAVFHPKGGVLRKVMEDYSRQRHVEDG 310

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              +  P +  A L+  SG  D Y   M      +++                 P +  +
Sbjct: 311 YEFVYTPHITKAHLFETSGHLDWYADGMYPPMHLDEERGPDGELRKQGQDYYLKPMNCPM 370

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E  + 
Sbjct: 371 HNLIFDARGRSYRELPLRLFEFGTVYRLEKSGVIHGMTRARGFTQDDAHIY-CTREQMRD 429

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    A     +V  S      P
Sbjct: 430 ELKNLLTFVLGLLADYGLDDFYLELSTKNPEKFVGSDEVWQEATETLREVAVSSGLELVP 489

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++    F   
Sbjct: 490 DPG--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNLP 525

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +  +DG +   V +     G++    AV+   + G   ++P  +AP ++ 
Sbjct: 526 ERF----ELEYTASDGSRQRPVMIHRALFGSIERFVAVLTEHYAG---VFPPWLAPVQVI 578

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I I        D   ++ A+L   G  +  D   +++  +   A     P  +I G + 
Sbjct: 579 GIPITDG---HVDYLYQVAAQLKAQGIRIEIDASDDRMQKKIRNAQKAKVPYMLIAGDED 635

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   V  ++R    +  + + + +          
Sbjct: 636 MAAGSVSFRYRDGSQKNGIPIADAVAEIVESVQKR 670


>gi|312195504|ref|YP_004015565.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226840|gb|ADP79695.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 580

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 141/222 (63%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE A+H+L++R G + + + GIYS+LPLG + L  + A++R+E  
Sbjct: 13  LSRTFIRTLREDPADAETANHRLLVRGGYVRKAASGIYSYLPLGLRVLRRIEAVVRQEMA 72

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+ +P L   +LW  SGR+  YG  M R+ DR       GPTHEE++T +  + +
Sbjct: 73  AAGCQELLMPALMPRELWDRSGRWADYGDLMFRVVDRKGTEFCLGPTHEELITSLVANEL 132

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
             +R+LP   +QIQ K+RDELRPR G++RSR+F+MKDAY+F    +  + +Y +M+ +Y 
Sbjct: 133 GGHRDLPLRVFQIQTKYRDELRPRSGLVRSRDFVMKDAYTFHADEDSLRETYREMYAAYE 192

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           R+F R GL+   + A++G +GG  + EF+   + GE  V  +
Sbjct: 193 RVFTRCGLRFRAVEAQAGEMGGGRNQEFMAPTEIGEDLVAFA 234



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 6/178 (3%)

Query: 264 NEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           N +  D+ P++       R +E+GHIF  GT+YS+P+ ATF  A G +    MG YGIG 
Sbjct: 399 NVRAGDASPDDSGPLTLERAVEIGHIFQLGTRYSVPLGATFLDAAGVERPALMGCYGIGI 458

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+++ VIE  HD  GI WP  +AP+ + +I +     V  D    +   L+ VG +V  
Sbjct: 459 SRLMSVVIEQHHDEHGIRWPAELAPYDVQVIPLGRR--VDEDLVRSVADMLAGVGLEVLV 516

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           DD  G   G +FA ADL+G P QV++G +  ++   E++ R      +++L E+ N  
Sbjct: 517 DDRSGASAGVKFADADLIGAPFQVVLGRR-AAEGIAELRTRDRSTVTEVALTELTNVI 573


>gi|73748213|ref|YP_307452.1| prolyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|114152188|sp|Q3ZZD0|SYP_DEHSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|73659929|emb|CAI82536.1| prolyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
          Length = 569

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +          
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKCSYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/181 (35%), Positives = 95/181 (52%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +    S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R+
Sbjct: 386 EGSACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCYGMGVGRL 445

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA IE +HD KGIIWP  +AP+++ +  +   + V R++ EKIYA L   G +V +DD 
Sbjct: 446 LAAAIEQNHDEKGIIWPMPIAPYQVYICGLFLDNPVVRESAEKIYAELEAKGIEVLFDDR 505

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F  ADLLG PL++ +  + +    VE K R     E + L+ ++        +
Sbjct: 506 ELTAGVKFNDADLLGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIVERVIATIKS 565

Query: 445 N 445
            
Sbjct: 566 E 566


>gi|209526622|ref|ZP_03275147.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209492990|gb|EDZ93320.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 604

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 145/443 (32%), Gaps = 47/443 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   ++ EQ R G   + 
Sbjct: 196 EEALRRDHRRLGKELGLFI-FSDQVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L   +L+  SG +  Y +++  +  +  D+  +    +      I++S ++SYR LP
Sbjct: 255 TPHLGRVNLFKTSGHWQKYREDLFPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELP 314

Query: 130 FTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +    +R E     G + R R F   DA+ F +TPE     + K+      +  +L
Sbjct: 315 IRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLF-VTPEQLDDEFLKVVDLIQSVLKKL 373

Query: 189 GLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            L  S   R        D         +  E  +  +                       
Sbjct: 374 KLDQSFKARLSFRDPNSDKYIGSDQAWEKAENAIRRA----------------------- 410

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATF 302
                        +        +    K        +   +  GT    Y+LP      +
Sbjct: 411 -------VETLGMNYFEGIGEAAFYGPKLDFIVQDALEREWQLGTVQVDYNLPERFDLEY 463

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     V +     G++  +  ++   + G   +W   +AP  + L+ +       
Sbjct: 464 VAEDGTRQRPVMIHRAPFGSLERLIGILIEEYTGDFPLW---LAPVMVRLLPV---SDEF 517

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +  +   +      D   +++G     A+    P+  +VG+K V  + + I+ R
Sbjct: 518 FPFVESVAEKWRSLDIRAEADHSHDRLGKMIRNAEKAKVPVMAVVGAKEVESNSLSIRTR 577

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G    +++ E  +      +N
Sbjct: 578 ALGELGTLTVAETQSRLQFALAN 600


>gi|203288149|ref|YP_002223164.1| threonyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|238690577|sp|B5RQ59|SYT_BORRA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|201085369|gb|ACH94943.1| threonyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 583

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 161/445 (36%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L + +E   RD      +L L +    +   G+  + P G +    +    REE  +
Sbjct: 172 KAYLKLQEEIKKRDHRKLGRELNLFSVH-DEIGPGLIFFHPHGARIRALIENFWREEHFK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y + M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWETSGHLDFYKESMFEKIEMDRSDYYVKPMNCPFHIAIYNTDKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G MR R F   DA+    T E       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGAIHGTMRVRGFTQDDAHII-CTYEQVNFEVREVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++++ G  ++     + P       +   +A     +                      
Sbjct: 350 DMWNKFGFTNLKAYLSTKPEKAVGDDDDWQMAVKVLEKALID------------------ 391

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              N   +      A      + K+ DSL    +++    +    F    ++      T+
Sbjct: 392 --FNIDFDIDEGGGAFYGPKIDLKIIDSLGRAWQMTTIQFD----FNLPVRF----KMTY 441

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DGK+     +    +G++     ++   + G   +W   +AP ++ +I + +   + 
Sbjct: 442 TAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPVW---LAPLQVVIIPVNS---IV 495

Query: 362 RDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   ++ +R    G  + +D+    ++ ++         P   I+G + V + K+ I+ 
Sbjct: 496 EEYALEVLSRFQNEGIRIKFDNYYNMRMNAKIRQYQSKKVPYMFIIGEREVVEGKISIRT 555

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + L+E + +   + SN 
Sbjct: 556 RTNEQINGLELKEALEFVKLKISNK 580


>gi|315639344|ref|ZP_07894506.1| threonine--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315480670|gb|EFU71312.1| threonine--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 602

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 162/445 (36%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD     ++L L T    Q   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLHIIEEAKKRDHRKLGNELKLFT-FDEQIGGGLPIWLSNGARLRSKLEQMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  A+ W  SG Y +Y + M    + +++     P +      I+++ ++
Sbjct: 254 RGYEPVRGPELLKAEAWKISGHYANYKENMY-FTNIDEQEYGIKPMNCVGHIKIYQNEVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILDFVA 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +      +   M   + P           +A     +    +             +   
Sbjct: 372 SLMKIFDFEY-EMEISTRPEKAIGDEAIWEVATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
           I +                                  R  + G I   F    ++ L  +
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTIQVDFNLPERFELEYT 463

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++    + K+  V +    +G+      ++     G+   +   +AP ++ ++ I    +
Sbjct: 464 SS---ENAKERPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTQVGIVPI---SE 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V     + I   L ++G D    D  E +  +   A+    P+ +++G + +S+  V ++
Sbjct: 515 VHLAYAKGIQRTLLEMGVDSEIYDKNESLSKKIRNAEKQKLPMILVIGDEELSNRAVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++ +SL+E +N    + + 
Sbjct: 575 DRRAKEQKSLSLDEFMNLIKEKINE 599


>gi|225874389|ref|YP_002755848.1| proline--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|254782879|sp|C1F3P3|SYP_ACIC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225793232|gb|ACO33322.1| proline--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 585

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 108/230 (46%), Positives = 144/230 (62%), Gaps = 1/230 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DAE+ASHK +LR+G I Q   GIYS+L  GQ++++ +  I+REE 
Sbjct: 3   RWSRLFVPTLREAPSDAEVASHKFLLRSGYIRQLGAGIYSYLLFGQRSINKIVGIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ G  E  +P +  ADLW ESGR+   G  M RL DR    +  G THEEVMTDI R+ 
Sbjct: 63  DKIG-QEFLLPAIHPADLWRESGRWTVMGDNMFRLKDRKGAELCLGMTHEEVMTDIARNE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RPR G++R R+FLMKD+YSFDL   G   SY+    +Y
Sbjct: 122 LRSYKQLPQIWYQIQNKFRDEPRPRSGLLRVRQFLMKDSYSFDLNQAGLDKSYDLHDAAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             IF R GL  + + A+SG +GG  S EF+V  D GE  +          
Sbjct: 182 RAIFTRCGLNFVVVEADSGAMGGSGSQEFMVYTDAGEDLIASCAKCGYAA 231



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 1/190 (0%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           +T   AA      E     +       A+ +E+GHIF  GTKY+  M A     +GK+  
Sbjct: 395 FTWTVAADIRNAAEGEGCPVCGEPLKVAKAVEIGHIFKLGTKYTESMGARVLDENGKEVM 454

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG YGIG  R++ A IE ++D  G   P S+APF + +      D+  R A E + A+
Sbjct: 455 PVMGCYGIGIERILTASIEQNNDANGFWLPRSIAPFDVVVTITNMADETLRQAGEALAAQ 514

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G +F  ADL+G P +  VG K +   K E+  R T   +D++L
Sbjct: 515 LEAAGYDVLLDDREERAGVKFKDADLVGIPYRFNVGKKTLE-GKTELVTRATASSQDVAL 573

Query: 432 EEVINYASHR 441
           +  +      
Sbjct: 574 DAAVEALKAL 583


>gi|54026044|ref|YP_120286.1| prolyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|81822939|sp|Q5YSB9|SYP_NOCFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|54017552|dbj|BAD58922.1| putative prolyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 585

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 173/386 (44%), Gaps = 24/386 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++R E 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLRVLRKVEDVVRAEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+S+P L   D +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEISLPALLPRDPYETTNRWTEYGDSLFRLHDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  +G K SYN    +Y
Sbjct: 124 YNSYKDLPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDEDGLKASYNAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLG+K + + A SG +GG  S EF+  +  GE      ++               
Sbjct: 184 QRIFDRLGVKYVIVAATSGAMGGSASEEFLADSPVGEDTYVICRESGYAANVEAV----- 238

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +            P A   D  +     SL E    +    + G                
Sbjct: 239 VTPAPEPQPIEGRPAAVVHDTPDTPTIASLVEWANAAGIAEQFGRP-------------- 284

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              AD   + +    +  G   +V   +    +        SV P ++ L  +   D   
Sbjct: 285 VTAADTLKNVMVKLRHPDGKTEIVGIGVPGDREVDDKRLGASVEPAEVEL--LTDADFAA 342

Query: 362 RDACEKIY---ARLSKVGCDVFWDDM 384
                K Y     L + G     D  
Sbjct: 343 NPFLVKGYIGPKALQENGIRYLVDPR 368



 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/149 (40%), Positives = 87/149 (58%), Gaps = 2/149 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+        G +GK   + MGSYGIG  R+VA + E  HD KG+ 
Sbjct: 423 RGIEIGHIFQLGYKYTDAFEVDVLGENGKPVRLIMGSYGIGVSRMVAVIAEQQHDEKGLR 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + ++ +   D+  R   E++ A L   G DV +DD     G +F  A+LLG
Sbjct: 483 WPAAVAPFDVHVV-VANKDEAARTGAEQVVAGLDAQGLDVLFDDRTASPGVKFKDAELLG 541

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            P  V++G +  +D  VE+++R TG  E+
Sbjct: 542 MPWVVVIG-RGWADGTVELRNRFTGEAEN 569


>gi|160946442|ref|ZP_02093651.1| hypothetical protein PEPMIC_00402 [Parvimonas micra ATCC 33270]
 gi|158447558|gb|EDP24553.1| hypothetical protein PEPMIC_00402 [Parvimonas micra ATCC 33270]
          Length = 567

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 106/218 (48%), Positives = 153/218 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y++P L+E+P++AEI SHKL+LR GMI + + GIYS+LPLG + +  V  I+REE
Sbjct: 1   MKMKRYYMPTLREDPQEAEIISHKLLLRAGMIRKSAAGIYSYLPLGYRTIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +  LQ  ++W ESGR+ ++G EM ++ DRN++    GPT EE  T +   
Sbjct: 61  MDRMGGYEILMSALQPKEIWEESGRWQTFGPEMFKVKDRNEREFCLGPTAEEYFTTLISG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD++PE    SY +M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDVSPEMMMESYKEMWKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           Y ++F+RLGL    +  ++G +GG+ SHEFI L+D GE
Sbjct: 181 YEKVFNRLGLNYKIVAGDAGAMGGNSSHEFIALSDVGE 218



 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 3/184 (1%)

Query: 265 EKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P + +     RGIEVG+IF  GTKYS  ++ATF   +G   Y  MGS+GIG  
Sbjct: 385 VQEGDVCPISGKPLKFARGIEVGNIFQLGTKYSKALNATFLDENGVSQYFWMGSHGIGIT 444

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R + A+IE ++D KGIIWP  VAP+   +  +  +D+      EKI+  L   G +V  D
Sbjct: 445 RSITAIIEQNNDEKGIIWPIQVAPYHAIVTVVNINDEEQMKLGEKIHDELEAQGVEVMLD 504

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D  E+IG +F   DL+G PL++ VG K  +++ +E   R      +MS E+ IN      
Sbjct: 505 DRKERIGVKFNDRDLIGIPLRITVGKK-ANENIIEFSTRREMENVEMSSEDAINIVVEEV 563

Query: 443 SNNR 446
              +
Sbjct: 564 RKIK 567


>gi|330719257|ref|ZP_08313857.1| threonyl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 654

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 149/441 (33%), Gaps = 35/441 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
                +   RD       L L      +   G+  WLP G      V   I +++     
Sbjct: 236 LQRRQEAKERDHRNIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYIVDKELSNDY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSY 125
           + +  P L + +L+  SG ++ Y ++M    D  D   +   P +      I++   +SY
Sbjct: 295 LHVYTPILSNLNLYKTSGHWEHYREDMFPPMDMGDGEFLELRPMNCPSHIMIYKHKPRSY 354

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R E      G+ R RE  + D ++F + PE  +  +  +    + +
Sbjct: 355 RELPMRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTF-VEPEKLEEEFKSILKMMMEV 413

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                  D   T  +   D M      +     D + 
Sbjct: 414 YEDFNITDYRFRLSYR--------------DPKNTAKYFDDDEMWEKSQKQLKTAMDDLG 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L+    +     A      + +   +L   + +S   ++    F    ++      ++ G
Sbjct: 460 LD--YFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLD----FLLPERF----DLSYIG 509

Query: 305 ADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DGK     V +    +G M    A +   + G    W   ++P ++ +I +        
Sbjct: 510 EDGKDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHG 564

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I  +L   G     +    ++G     A     P  +++G   V+D  V ++   
Sbjct: 565 DYARRIQQQLQVAGLRANVETKDAKMGYLIREAQTKKVPYTLVLGDNEVADETVTVRQYG 624

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +   E +S+           +
Sbjct: 625 SEKTETISIAAFEKLILADVA 645


>gi|111224550|ref|YP_715344.1| threonyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111152082|emb|CAJ63808.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) [Frankia alni
           ACN14a]
          Length = 692

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 147/453 (32%), Gaps = 43/453 (9%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           S+  L   Q    +AE   H+     L L +    +   G+  + P G      +    R
Sbjct: 275 SRDALKAYQTRLAEAEKRDHRRLGAELDLFS-FPTEIGPGLAVFHPKGGAIRTAMEDYAR 333

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDI 117
                 G   ++ P +  +DL+  SG  D +   M    +          P +  +   I
Sbjct: 334 RRHIEAGYSFVNTPHITKSDLYEISGHLDWFADGMYPPMELDGGTDYYLKPMNCPMHILI 393

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ F    E      + 
Sbjct: 394 YRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAR-EQLPAELDS 452

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   + P G  +  +      T   +    K  ++  + +  
Sbjct: 453 VLNFVLGLLRDYGLSDFYLELSTKPEGKAVGTDAEWEEATELLRAAAQKQDLELVLDAGG 512

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             F                        + +  D++    ++S   ++    F    ++  
Sbjct: 513 GAFYG-------------------PKISVQARDAIGRTWQLSTIQVD----FQLPQRF-- 547

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                ++ ADG       +     G +    A++   + G     P  +AP +   I I 
Sbjct: 548 --DLEYQAADGTRQRPFMIHRALFGTIERFLAILLEHYAGA---LPPWLAPVQAIGIPIT 602

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     + + A+LS  G  V  D   +++  +   A     P  ++ G + V+   
Sbjct: 603 ---DEHVPYLDGVAAKLSAHGVRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDEDVAKGA 659

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           V  + R    R  + +++ +       +    V
Sbjct: 660 VSFRFRDGTQRNGVPVDDAVAEILDAVTRRLQV 692


>gi|312218414|emb|CBX98360.1| similar to threonyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 784

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/478 (17%), Positives = 156/478 (32%), Gaps = 48/478 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L  L+E   RD               H+ S G   +LP GQ   + + A +REE   
Sbjct: 314 QAHLKFLEEAAKRDHRKIGK--DQELFFFHEFSPGSCFFLPHGQIIYNTLQAFLREEYWN 371

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW  SG +  Y  +M    D   +     P +      IF+   +
Sbjct: 372 RGYQEVGSPNMYNSALWKISGHWQHYADDMFTF-DVEKEKWALKPMNCPGHCLIFKHRER 430

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP       +  R+E      G+ R R F   D + F  T +        +F    
Sbjct: 431 SYRELPIRMADFGILHRNEASGALTGLTRVRRFQQDDTHVF-CTQDQINEEILALFDFLK 489

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF----------CSKDFMDFPI 232
            ++ + G     ++  + P G     +    A+   TQ               +  D   
Sbjct: 490 AVYGKFGFTF-KLKLSTRPEGFLGDIDTWNQAEAKLTQALDEFTAGGGGAWELNPGDGAF 548

Query: 233 PSENTDFD----------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                D                  D    N    ++     A +    EK+     + ++
Sbjct: 549 YGPKIDITISDALKREFQCATIQLDFQLPNQFELEYMTSEGAATKPKEEKVKAEQQKVEK 608

Query: 277 VSARGIEVGHIFY----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            + +  E  HI       G + ++P         G    V +     G+     A++   
Sbjct: 609 KAEQPKEKDHIDQKKDNLGGQVAIPKEIRPP-QPGYARPVMIHRAIYGSFERFIAILTEH 667

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             G    WP  ++P ++ +I +        D  +++ A L K       D  G  +  + 
Sbjct: 668 FAG---RWPFWLSPRQVMVIPVMPS---ANDYVKEVQAELRKHHLHADIDISGNTMQKKI 721

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
             A L  +   ++VG++      V  ++R     +     + L+E +          R
Sbjct: 722 RTAQLSLYNFIMVVGAEEQKARAVNWRNRDDQETQQRGEIVPLDEAVKKLVQLRDERR 779


>gi|304384864|ref|ZP_07367210.1| proline--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|304329058|gb|EFL96278.1| proline--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 571

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 147/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P ++E P DAE+ SHK+MLR G I Q S G+Y++LP+  K ++ +  IIREE
Sbjct: 1   MKQSKILIPTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPMAYKVMEKIKRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MTAIDAVEMLTPAVLPAELWKKSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+K+RDE RPR+G++R REFLM DAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLTLYQIQMKYRDEDRPRYGLLRGREFLMSDAYSFHADEETLDESFRAFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GLK   +  ++G +GG  S EF  +A  GE  +  S++     
Sbjct: 181 YQNIFDRCGLKYREIVGDAGAMGGHDSKEFSAIASIGEDTIAYSEESDYAA 231



 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 2/213 (0%)

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
             N D     ++N   +     +A    V  E       + K    +GIE+GHIF  GTK
Sbjct: 361 GANEDGYHYTNVNVGRDFNVDQFADIRTVK-EGELAPDGKGKLKFTKGIEIGHIFKIGTK 419

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  + AT    +G+   V MG YGIG  R+++AV E   D  G++WP ++APF + +I 
Sbjct: 420 YSKALDATVLDQNGRAIPVIMGCYGIGVSRLLSAVSEQLADENGLVWPKNIAPFDVHVIP 479

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           + A +       ++I   L   G DV  DD  E+ G +FA +DL+G PL+V VG K  S+
Sbjct: 480 VNAKNDEQMQVADQINTELVAAGYDVLIDDRKERAGVKFADSDLIGIPLRVTVGKK-ASE 538

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             VE+K R TG   ++ L E+ N      +  +
Sbjct: 539 GIVEVKLRQTGETVEVKLAELKNTVEILLNQAQ 571


>gi|224534482|ref|ZP_03675058.1| threonine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514159|gb|EEF84477.1| threonine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 581

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 157/448 (35%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFSPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVVDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  S+     + P     +     ++     +                  
Sbjct: 346 RFAIYMWSKFGFNSLKAYLSTKPEKFVGNDSDWEMSLKVLEEALSGFKVPYEIDKGGG-- 403

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + K+ DSL    ++S    +    F    ++++  
Sbjct: 404 ------------------AFYGPKIDLKIVDSLEREWQMSTVQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P +  +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILIEHYGGAFPLW---LSPIQAVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+  +    G  +  D+   ++ ++         P   I+G +  ++ K+ 
Sbjct: 494 --AVEDYAIKVLNKFKNEGIRIKLDNTSSRMNAKIREYQAKKIPYMFIIGEREATEEKIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L+E   +   +  + 
Sbjct: 552 IRTRTNEQINGIKLDEAFEFILLKIRDK 579


>gi|62261354|gb|AAX77983.1| unknown protein [synthetic construct]
          Length = 600

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 111/285 (38%), Positives = 175/285 (61%), Gaps = 5/285 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 27  MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 86

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 87  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 146

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 147 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 206

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK-----DFMDFPIPSE 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  +  S        ++    ++
Sbjct: 207 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGEDIICYSNGSDYAANIELATYAK 266

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +     + S N+I +  T        +  E  FD     K +  +
Sbjct: 267 SDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIK 311



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++           +D+ N    D  P+ K       GIEVGHIF     YS PM
Sbjct: 390 DDYHFTNVNWDRDVTNYQIADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPM 449

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
           +A   G DGK   + MG YG G  RV+AA IE SHD  GIIWP+S+AP++++++ I    
Sbjct: 450 NANIIGQDGKSKPMLMGCYGFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNK 509

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  +K+Y  L   G DV  DD G + G  FA ADL+G+   V++G + +    +E
Sbjct: 510 SDKIKEVADKLYQDLLGDGIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIE 569

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
            K+R T  ++++++ E+I    
Sbjct: 570 YKNRKTQEKQEITIAELIKILK 591


>gi|323181612|gb|EFZ67027.1| prolyl-tRNA synthetase [Escherichia coli 1357]
          Length = 547

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 144/206 (69%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            SHEF VLA +GE  V  S       
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDTSDYAA 206



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 341 DGKHYFGINWDRDVATPEIADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 401 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 460

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 461 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 521 YKYRRNGEKQLIKTGDIVEYLVKQIK 546


>gi|315453026|ref|YP_004073296.1| prolyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132078|emb|CBY82706.1| prolyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 577

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 143/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P  +E P+DA + SH+ M++ G + Q   G+Y +LPLG K L  + A+++E 
Sbjct: 1   MRFSQLFAPTTKEVPKDAVLKSHQFMVQGGYLQQMGSGLYHFLPLGHKVLSKIRAVVKEV 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E ++  +  A LW ESGR++ YGKE+L   DR +   +  PTHEE +T I +S
Sbjct: 61  MDSYGAQECTLGFVVPASLWQESGRFEQYGKELLSFPDRKNNLCVLSPTHEEAITQIAKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           HIKSY+ LP   YQI  KFRDE+RPRFG+MR+REF+MKDAYSF  + E     + +M  +
Sbjct: 121 HIKSYKQLPLNLYQIHTKFRDEIRPRFGLMRAREFVMKDAYSFHASTECLDKEFERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL    + A+SG IGG  S EF+VLA  GE  V   +      
Sbjct: 181 YSEIFSRLGLNFRAVEADSGAIGGSKSKEFVVLAACGEDSVIVCQKCNYAA 231



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 3/185 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   +  D+ PE +      R IEVGHIF  G KYS  + A +   +G+  Y +MG
Sbjct: 391 NYQDIAQARPEDACPECQGTLSEQRSIEVGHIFKLGNKYSKSLEARYLDQEGQLQYFEMG 450

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+++A++E + D KG +W  + APF++ ++   + D       E++Y  L   
Sbjct: 451 CYGIGVSRLMSAILEQNSDEKGCVWSKTSAPFEVVVLVANSKDSALESLGEELYQELKGA 510

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  ++ G++ A  +L+G    +IVG + +   + E+  R    +  ++ E ++
Sbjct: 511 GVDVLLDDRIDRFGAKMADFELIGCSHALIVGKQALE-GQFELIARQGLSKRVIAREAIV 569

Query: 436 NYASH 440
           +    
Sbjct: 570 STLLE 574


>gi|315503148|ref|YP_004082035.1| threonyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409767|gb|ADU07884.1| threonyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 671

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 139/448 (31%), Gaps = 43/448 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +   +R     
Sbjct: 250 KAYLKLLEEAARRDHRKLGADLDLFS-FPDEIGSGLPVFHPKGGVLKRVMEDYVRARHVE 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M    +           +  +   I+RS  +
Sbjct: 309 EGFDYVGTPHISKEGLFHTSGHLPYYKDTMFPPMEMEGSDYYLKAMNCPMHNLIYRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R F   D++S+  T E +      +    L
Sbjct: 369 SYRQLPIRLFEFGTVYRYEKSGVIHGLTRVRGFTQDDSHSY-CTREQAPSEIKHLLGFVL 427

Query: 183 RIFHRLGLKSIPMRAESG----PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +    G+    +   +     P     S E    A     Q          P P     
Sbjct: 428 SLLRDFGIDDFYLELSTRDESKPDKFVGSDEDWATATAVLEQCALETGLELVPDPG---- 483

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + +  D++    ++S    +               
Sbjct: 484 ----------------GAAFYGPKISVQAKDAIGRTWQMSTIQYDFNQP--------KGF 519

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              ++ ADG +   V +     G++     V+   + G    W   +AP ++  I I+  
Sbjct: 520 GLEYQAADGTRQQPVMIHCAKFGSIERFIGVLTEHYAGAFPAW---LAPVQVVGIPIR-- 574

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D      A L + G     D   +++  +   A     P  VI G   V+   V 
Sbjct: 575 -DEHGDYLVDFAATLRRHGVRAEVDLGDDRMQKKIRNAQQQKIPFMVIAGDDDVAAGTVS 633

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++R    R  + ++E + +      + 
Sbjct: 634 FRYRDGSQRNGVPVDEAVAHVREVVESR 661


>gi|302866733|ref|YP_003835370.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302569592|gb|ADL45794.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 672

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 138/444 (31%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +   +R     
Sbjct: 250 KAYLKLLEEAARRDHRKLGADLDLFS-FPDEIGSGLPVFHPKGGVLKRVMEDYVRARHVE 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M    +           +  +   I+RS  +
Sbjct: 309 EGFDYVGTPHISKEGLFHTSGHLPYYKDTMFPPMEMEGSDYYLKAMNCPMHNLIYRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R F   D++S+  T E +      +    L
Sbjct: 369 SYRQLPIRLFEFGTVYRYEKSGVIHGLTRVRGFTQDDSHSY-CTREQAPSEIKHLLGFVL 427

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+    +   +               ++   +   S                + 
Sbjct: 428 SLLRDFGIDDFYLELSTRD-------------ESKPDKFVGSDSDWATATAVLEQCGLET 474

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +       A      + +  D++    ++S    +                  +
Sbjct: 475 ---GLELVPDPGGAAFYGPKISVQAKDAIGRTWQMSTIQYDFNQP--------KGFGLEY 523

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG +   V +     G++     V+   + G    W   +AP ++  I I+      
Sbjct: 524 QAADGTRQQPVMIHCAKFGSIERFIGVLTEHYAGAFPAW---LAPVQVVGIPIR---DEH 577

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D      A L + G     D   E++  +   A     P  VI G   V+   V  ++R
Sbjct: 578 GDYLVDFAATLRRHGIRAEVDLGDERMQKKIRNAQQQKIPFMVIAGDDDVAAGTVSFRYR 637

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  + ++E + +      + 
Sbjct: 638 DGSQRNGVPVDEAVAHVREVVESR 661


>gi|312970296|ref|ZP_07784478.1| prolyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|110613794|gb|ABF02461.1| proline tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|310337794|gb|EFQ02905.1| prolyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|313646744|gb|EFS11203.1| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|323160236|gb|EFZ46194.1| prolyl-tRNA synthetase [Escherichia coli E128010]
 gi|332098769|gb|EGJ03729.1| prolyl-tRNA synthetase [Shigella boydii 3594-74]
 gi|332762199|gb|EGJ92468.1| prolyl-tRNA synthetase [Shigella flexneri 4343-70]
          Length = 547

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 144/206 (69%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            SHEF VLA +GE  V  S       
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDTSDYAA 206



 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 341 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 401 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 460

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 461 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 521 YKYRRNGEKQLIKTGDIVEYLVKQIK 546


>gi|270290317|ref|ZP_06196542.1| prolyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|270281098|gb|EFA26931.1| prolyl-tRNA synthetase [Pediococcus acidilactici 7_4]
          Length = 571

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 147/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P ++E P DAE+ SHK+MLR G I Q S G+Y++LP+  K ++ +  IIREE
Sbjct: 1   MKQSKILIPTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPMAYKVMEKIKRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MTAIDAVEMLTPAVLPAELWKKSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+K+RDE RPR+G++R REFLM DAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLTLYQIQMKYRDEDRPRYGLLRGREFLMSDAYSFHADEETLDESFRAFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GLK   +  ++G +GG  S EF  +A  GE  +  S++     
Sbjct: 181 YQNIFDRCGLKYREIVGDAGAMGGHDSKEFSAIASIGEDTIAYSEESDYAA 231



 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 2/213 (0%)

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
             N D     ++N   +     +A    V  E       + K    +GIE+GHIF  GTK
Sbjct: 361 GANEDGYHYTNVNVGRDFDVDQFADIRTVK-EGELAPDGKGKLKFTKGIEIGHIFKIGTK 419

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  + AT    +G+   V MG YGIG  R+++AV E   D  G++WP ++APF + +I 
Sbjct: 420 YSKALDATVLDQNGRAIPVIMGCYGIGVSRLLSAVSEQLADENGLVWPKNIAPFDVHVIP 479

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           + A +       ++I   L   G DV  DD  E+ G +FA +DL+G PL+V VG K  S+
Sbjct: 480 VNAKNDEQMQVADQINTELVAAGYDVLIDDRKERAGVKFADSDLIGIPLRVTVGKK-ASE 538

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             VE+K R TG   ++ L E+ N      +  +
Sbjct: 539 GIVEVKLRQTGETVEVKLAELKNTVEILLNQAQ 571


>gi|172040525|ref|YP_001800239.1| prolyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|226699134|sp|B1VGB6|SYP_CORU7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171851829|emb|CAQ04805.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 592

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G I + + G+YSWLP+G + L  V  ++R E 
Sbjct: 4   RMSSLFLHTLRDDPADAELASHKLLVRAGYIRRVAPGVYSWLPMGLRVLRKVENVVRREM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+D YG E+ RL DR +   + GPTHEE+ T + +  
Sbjct: 64  DAIGGQELMFPALLPKEPYEVTRRWDEYGPELFRLKDRKEADYLLGPTHEELFTWLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSF++T EG   SY     +Y
Sbjct: 124 LNSYKDFPKVLYQIQTKYRDEARPRAGILRGREFVMKDSYSFNMTDEGLDESYRLHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF  LG++ +   A SG +GG  S EF+ +A  GE     S
Sbjct: 184 QRIFDALGIEYVICYATSGAMGGSASEEFLAVAADGEDTFVRS 226



 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 5/180 (2%)

Query: 264 NEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  D  P+ K     +RGIE+GHIF  G KY+          +G+     MGSYGIG 
Sbjct: 411 EVREGDPSPDGKGVLTLSRGIEIGHIFQLGRKYTEAFDVQILDENGRRTVPTMGSYGIGV 470

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++A V E  HD KG+ WP S+AP+ + ++ I   D+   +A  ++   LS  G +V +
Sbjct: 471 SRLLAVVAEQMHDEKGLRWPRSIAPYDVHVV-IANKDEAAGEAARELAEALSDAGLEVLF 529

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           DD  +   G +F  ++LLG P  V+VG +  ++ KVE++ RL   R ++   + ++  + 
Sbjct: 530 DDRPKVSPGVKFKDSELLGMPQVVVVG-RGFAEGKVELRDRLNDERSEIDYADAVDVITK 588


>gi|309787126|ref|ZP_07681738.1| prolyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308924704|gb|EFP70199.1| prolyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 547

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 144/206 (69%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            SHEF VLA +GE  V  S       
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDTSDYAA 206



 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 341 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 401 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 460

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 461 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   +++ Y   +  
Sbjct: 521 YKYRRNGEKQLIKTGDIVEYLVKQIK 546


>gi|289432262|ref|YP_003462135.1| prolyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288945982|gb|ADC73679.1| prolyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 569

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 153/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D  ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDHNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +          
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKCSYAA 231



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/181 (34%), Positives = 93/181 (51%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +    S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R+
Sbjct: 386 EGSACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCYGMGVGRL 445

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA IE +HD KGIIWP  +AP+++ +  +   + V R++ EKIY  L     +V +DD 
Sbjct: 446 LAAAIEQNHDEKGIIWPMPIAPYQVYICGLFLDNPVVRESAEKIYKELEAKSIEVLFDDR 505

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F  ADLLG PL++ +  + +    VE K R     E + L+ ++        +
Sbjct: 506 ELTAGVKFNDADLLGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIVERVIATIKS 565

Query: 445 N 445
            
Sbjct: 566 E 566


>gi|237785730|ref|YP_002906435.1| prolyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758642|gb|ACR17892.1| Prolyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 594

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/223 (45%), Positives = 139/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG K L N+  I+REE 
Sbjct: 8   RMSSLFVRTLREDPADAEVPSHKLLVRAGFIRRIAPGVYSWLPLGLKVLRNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   D +  +GR+  YG  + RL DR     + GPTHEE+ T+  +  
Sbjct: 68  DGIGAQEIELPALLPRDAYEVTGRWTEYGDALFRLKDRKKGDYLLGPTHEEIFTETVKGE 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+M D+YSFD+  EG + SY K   +Y
Sbjct: 128 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMCDSYSFDMKDEGLEESYQKHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            R+F+RLGL      A SG +GG  S EF+ ++  GE     S
Sbjct: 188 QRMFNRLGLDYAICAATSGAMGGSASEEFLAVSPVGEDTFVTS 230



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 3/164 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIE+GHIF  G KY+          +GK     MGSYG+G  R+VA V E  HD KG+ W
Sbjct: 432 GIEIGHIFQLGRKYTNAFELDVLDENGKRSRPTMGSYGVGVSRLVAVVAEQYHDDKGLKW 491

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLG 399
           P SVAPF + L+ +   D    +A   +   LS  G D+ +DD  +   G +F  ++LLG
Sbjct: 492 PVSVAPFPVHLV-VANKDAEAAEAASTLAEELSNRGLDILFDDRPKVSPGVKFKDSELLG 550

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  V++G +   + K+E++ RL    E + +++   + +    
Sbjct: 551 MPYVVVLG-RAFKEGKIEVRDRLADSVETVPVDDAAEHIARLVK 593


>gi|297663737|ref|XP_002810324.1| PREDICTED: LOW QUALITY PROTEIN: threonyl-tRNA synthetase,
           mitochondrial-like [Pongo abelii]
          Length = 719

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 158/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 287 LLRAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 346

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 347 RGFSEVKTPTLFSTKLWKQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 406

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 407 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 466

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 467 -DQLEAEIQSCLDFLRSVYAVLGFSF-HLALSTRPSGFLG---DPCLWDQAEQVLKQALK 521

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 522 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 561

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 562 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 613

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I +    +   +  ++    L   G     D D G  +  +   A L  +  Q 
Sbjct: 614 PFQVVVIPVGTEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQF 670

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S   V I+ R      +  L E +        N R
Sbjct: 671 VVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 711


>gi|149173541|ref|ZP_01852171.1| threonyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148847723|gb|EDL62056.1| threonyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 726

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 86/510 (16%), Positives = 161/510 (31%), Gaps = 105/510 (20%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y   + +   RD  +   KL L + +  +  +G+  WLP G      +   I+ E
Sbjct: 234 MK--QYLEQVEEAKRRDHRVLGKKLGLFS-INPEVGQGLCLWLPKGATIRAVLEDFIKVE 290

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYG------------------------------ 90
             R G   +  P +   +L+  SG +  Y                               
Sbjct: 291 LTRLGYQPVYSPHIGRVELYETSGHFPYYRDSQFAPLFGHDAGQLVDFWVRKLEEDSLSA 350

Query: 91  --KEMLRLADR--------------------------NDKAMIYGPTHEEVMTDIFRSHI 122
             +E+   + R                            +  +  P +     ++++S  
Sbjct: 351 EDEELFFKSSRVMNCDFEFPPGASREEKLKILKAWEHKHERYLLKPMNCPHHAEMYKSMP 410

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +    +R E      G++R R     DA+ F  TPE  +  +       
Sbjct: 411 RSYRDLPVRLAEFGTVYRHEQTGELNGMLRVRGLTQDDAHIF-CTPEQVEEEFRATLELV 469

Query: 182 LRIFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             +   +GL +  ++      G D    S E    A+    +V  +          E   
Sbjct: 470 KFVLASVGLDNFRVQLSLREPGSDKYVGSEENWQHAENSLRKVLEASGMSYSECEGEAAF 529

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +                              +         R  ++G +      Y+LP 
Sbjct: 530 YGPK---------------------------ADFMVSDCIGREWQLGTV---QLDYNLPE 559

Query: 298 -MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + G+D + H  V +     G+M     ++     G   +W   +AP +I ++ + 
Sbjct: 560 RFKLEYTGSDNQPHRPVMIHRAPFGSMERFTGMLIEHFAGAFPLW---LAPEQIRVLPV- 615

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   ++ A+L K G  V  D    ++ ++   A L   P   IVG K    + 
Sbjct: 616 --SDKTLDYANEVVAQLRKNGFRVSIDTRSSKVNAKIRDAQLELIPYMFIVGPKEAEQTA 673

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R+ G    M L + I          
Sbjct: 674 VAVRDRIDGDLGPMPLADAIAKLKQEADER 703


>gi|326692543|ref|ZP_08229548.1| prolyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 571

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 102/243 (41%), Positives = 146/243 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++++LPL Q+ L+ + AIIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVAAGMFAYLPLAQRVLNKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM VP +  A+LW +SGRY++YG  + +  +R  +  I GPTHEE  T +   
Sbjct: 61  MDRIDANEMLVPEILPAELWEKSGRYETYGPALYKFKNRQARDFILGPTHEETFTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPRFG++R+REF+MKDAYSF     G   +Y+ M  +
Sbjct: 121 DIKSYKKLPLIVYQLQAKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDQAYHDMEAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    +  ++G +GG  S EF   A  GE  +  S             D+ 
Sbjct: 181 YTNIFDRIGLSYRAIVGDAGAMGGSDSKEFSAPAAAGEDIIAYSDASDYAANLEMAKDYY 240

Query: 241 DII 243
           +  
Sbjct: 241 ERQ 243



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 1/165 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +   V  RGIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+
Sbjct: 391 EGDLAIDGKGHLVFTRGIEIGHIFKLGTRYSKTMGAQILDENGRQIDMIMGSYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A+ E   D  G++WP SVAPF + ++ +   D+       ++ A L+  G DV  DD 
Sbjct: 451 LSAIAEQMADDDGLVWPASVAPFDVHIVPVNLKDEDQARITSQLEAELTAQGLDVLVDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            E+ G +FA ADL+G P+++ VG K   D  VE+K R +    +M
Sbjct: 511 KERAGVKFADADLIGLPIRITVGKKAAED-VVEVKVRASNTNIEM 554


>gi|323176512|gb|EFZ62104.1| prolyl-tRNA synthetase [Escherichia coli 1180]
          Length = 547

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 144/206 (69%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            SHEF VLA +GE  V  S       
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDTSDYAA 206



 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 341 DGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H 
Sbjct: 401 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHK 460

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 461 SFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   ++I Y   +  
Sbjct: 521 YKYRRNGEKQLIKTGDIIEYLVKQIK 546


>gi|15921207|ref|NP_376876.1| threonyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|22654128|sp|Q973C8|SYT_SULTO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15621992|dbj|BAB65985.1| 540aa long hypothetical threonyl-tRNA synthetase [Sulfolobus
           tokodaii str. 7]
          Length = 540

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 152/444 (34%), Gaps = 42/444 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E    D  I   +L L +    + + G+  +   GQ     +   + E     G
Sbjct: 123 YLKWLEEVSEYDHRIIGERLDLFS-FPDETAPGLALFHYKGQIIRKELMKFMEEINESMG 181

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +  + LW  SG YD Y  +M+      D+ +   P +      I++S  +SY
Sbjct: 182 YQEVFTAEIYRSILWKTSGHYDYYKDKMVLFK-MEDEELGLKPMNCPAHILIYKSKTRSY 240

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  F +  L FR E R    G++R R F+  D + F LT +  K     +    + +
Sbjct: 241 KDLPIRFSEFGLVFRWEKRGELYGLLRVRGFVQDDGHIF-LTEDQIKDEVKMLVKKTIDV 299

Query: 185 FHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               G     + +   + P     S E    A                    E   +   
Sbjct: 300 LSIFGFKGDDVRINLSTRPDESIGSDELWEKATNALVSALNELGIKYIVKEKEGAFYGPK 359

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I  +                      DSL    ++S   ++    F    ++       +
Sbjct: 360 IDFDI--------------------RDSLGRWWQLSTIQVD----FNLPERF----KLEY 391

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG +   V +     G++    A++     GK   W   ++P ++ ++ I       
Sbjct: 392 IDKDGSRKRPVMIHRAIYGSIERFMAILLEHFRGKLPTW---LSPVQVRILPISKD---V 445

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    + ++L +    V  D   E +  +   A   G P  +IVG K   + KV ++ R
Sbjct: 446 EDYALNLLSKLKENKIRVELDMSDETLSKRIKKAYDEGVPYMIIVGKKEREEGKVTVRGR 505

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +  ++ +        N 
Sbjct: 506 NNVEIRGVKFDDFLKALLEEIRNR 529


>gi|315444957|ref|YP_004077836.1| prolyl-tRNA synthetase, family II [Mycobacterium sp. Spyr1]
 gi|315263260|gb|ADU00002.1| prolyl-tRNA synthetase, family II [Mycobacterium sp. Spyr1]
          Length = 584

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/224 (41%), Positives = 132/224 (58%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E +
Sbjct: 1   MSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIEHIVRSEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +   
Sbjct: 61  AIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRDNDYLLGPTHEEMFTLTVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y+    +Y 
Sbjct: 121 SSYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVDDDGLKNAYHAHREAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           RIF RL ++ + + A SG +GG  S EF+  ++ GE        
Sbjct: 181 RIFDRLKVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRCAQ 224



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 2/152 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  G KY+   +A   G +GK   + MGSYGIG  R+VA + E  HD  G+ 
Sbjct: 419 RGIEIGHVFQLGRKYADAFNADVLGENGKPVRLTMGSYGIGVSRLVAVIAEQHHDELGLR 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAPF + ++ I   D   R    ++   L + G DV  DD     G +F  A+LLG
Sbjct: 479 WPGSVAPFAVHVV-IANKDAEARAGATELATALDRAGADVLLDDRTASPGVKFKDAELLG 537

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            P  V+VG +  +D  VE++ R +G + ++ +
Sbjct: 538 VPWIVVVG-RGWADGVVELRDRFSGEKREIPV 568


>gi|270284377|ref|ZP_05966008.2| proline--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270276752|gb|EFA22606.1| proline--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 602

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 142/234 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G + + + GI++WLPLG   L+ + AIIREE
Sbjct: 5   LRMSSLFLRTLREDPADADVDSDKLLQRAGYLRKAAPGIWTWLPLGLSVLNKIEAIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L     +  + R++ YG+ + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MNGIGAQEVHFPALLPRAPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG K  Y +   +
Sbjct: 125 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDEEGMKRCYMEERAA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL L+ +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 185 YERIFQRLDLQYVPVFAMSGPMGGSASEEFLAPLAIGEDTFALAPSGKAWNVEA 238



 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 2/166 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + ES HD +G+ 
Sbjct: 437 RGVEIGQVFQLGLKYSEALGLNVLNQNGKSVPVWMGCYGIGVSRVLACIAESHHDERGLA 496

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     D+   +A EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 497 WPANIAPAQVHVVA-TGKDEAAFEAAEKLVAELEARGVEVIFDDRKKVSPGVKFKDAELI 555

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL  + G   V+D  +E++ R    ++ +  E      + R +N
Sbjct: 556 GVPLIAVAGRDTVNDGTIEVRLRDGSDKQAVPAETAAQVIADRVAN 601


>gi|300173545|ref|YP_003772711.1| threonyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887924|emb|CBL91892.1| Threonyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 655

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 151/433 (34%), Gaps = 38/433 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD       L L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRTIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELANGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  D   +   P +      +F+   +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFKHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++ +  R E      G+ R RE  + D ++F + PE  +  +  +    + ++ 
Sbjct: 357 LPIRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTF-VEPEKIEEEFKSILTMMMAVYR 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +     R                  D   T+ +   D M     ++     D + L+
Sbjct: 416 DFNITDYRFRLSYR--------------DPKNTEKYFDDDEMWEKSQAQLKSAMDDLKLD 461

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +     A      + +   +L   + +S   ++    F    ++      T+ GAD
Sbjct: 462 --YYEAEGEAAFYGPKLDVQTKTALGNEETMSTIQLD----FLLPERF----DLTYIGAD 511

Query: 307 GK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G+     V +    +G M    A +   + G    W   ++P ++ +I +        + 
Sbjct: 512 GQDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHGEY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L  VG     +    ++G     A     P  +++G   V    V ++     
Sbjct: 567 ADGVQKKLQAVGLRANVETKEAKMGYLIREAQTNKIPYTLVLGDSEVDAQTVTVRKYGEE 626

Query: 425 IREDMSLEEVINY 437
             + MS    I++
Sbjct: 627 KTQTMS---FIDF 636


>gi|147668995|ref|YP_001213813.1| prolyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|189083496|sp|A5FS84|SYP_DEHSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146269943|gb|ABQ16935.1| prolyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 569

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +          
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKCSYAA 231



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/181 (34%), Positives = 93/181 (51%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +    S RG+EVGHIF  GT  S    A F  A+G  H + MG YG+G  R+
Sbjct: 386 EGSACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCYGMGVGRL 445

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA IE +HD KGIIWP  +AP+++ +  +   + V R++ EKIY  L     +V +DD 
Sbjct: 446 LAAAIEQNHDEKGIIWPMPIAPYQVYICGLFLDNPVVRESAEKIYKELEAKSIEVLFDDR 505

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F  ADLLG PL++ +  + +    VE K R     E + L+ ++        +
Sbjct: 506 ELTAGVKFNDADLLGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIVERVIATIKS 565

Query: 445 N 445
            
Sbjct: 566 E 566


>gi|227549046|ref|ZP_03979095.1| prolyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078900|gb|EEI16863.1| prolyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 604

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 144/223 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG + L  +  ++REE 
Sbjct: 15  RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRAAPGVYSWLPLGLRTLRKIETVVREEM 74

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA+E+  P L   + + ++ R+  YG ++ RL DR    M+ GPTHEE+ T   +S 
Sbjct: 75  DAMGALELLFPALLPREPYEQTNRWTEYGDDLFRLKDRKGADMLLGPTHEEMFTVAVKSM 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG + SY K   +Y
Sbjct: 135 FSSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDMTDEGLEQSYQKHRSAY 194

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF R+G++     A SG +GG  S EF+  +D+GE     S
Sbjct: 195 QRIFDRVGIRYEICEATSGAMGGSASEEFLAYSDSGEDTFVIS 237



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  M        GK     MGSYGIG  R++A V E  HD KG++
Sbjct: 441 RGIELGHIFQLGRKYTEAMDVQILDEGGKRAVPTMGSYGIGVSRMMAVVAEQRHDEKGLV 500

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLL 398
           WP ++AP+++ ++ +   D     A E I   L   G +V +DD  +   G +F  A+LL
Sbjct: 501 WPVAIAPYQVHVV-VANKDAAALQAGEDIAGELDAAGLEVLFDDRPKTSPGVKFKDAELL 559

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  VI+G +  ++  VE++ R  G   +++  EV+       +
Sbjct: 560 GMPFIVILG-RSFAEGIVELRIRG-GETLEVASAEVVAKVRELVA 602


>gi|297297312|ref|XP_001086926.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Macaca mulatta]
          Length = 708

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 147/441 (33%), Gaps = 70/441 (15%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 323 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRDFTE 382

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 383 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 441

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 442 PMRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 500

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                                
Sbjct: 501 FGFSF-QLNLSTRPENFLGEIEMWNEAEK------------------------------- 528

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                                 ++    + +   ++    F    +++L    T+   DG
Sbjct: 529 ---------------XXXXXXXAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 565

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 566 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 619

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++ +   + G     D D    +  +   A L  +   ++VG K   ++ V ++ R   
Sbjct: 620 LQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDNK 679

Query: 425 IREDMSLEEVINYASHRFSNN 445
           I  ++ +   I    +   + 
Sbjct: 680 IHGEILVTSAIVKLKNLKKSR 700


>gi|328855773|gb|EGG04898.1| hypothetical protein MELLADRAFT_37217 [Melampsora larici-populina
           98AG31]
          Length = 687

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 155/456 (33%), Gaps = 50/456 (10%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD               H+ S G   WLP G +  + +   ++ E
Sbjct: 269 MAEYKKFL--EEAAKRDHRKIGK--DQELFFFHEMSPGSCFWLPHGTRIYNTLVEFLKSE 324

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG +++Y + M +L +   +     P +      IF S
Sbjct: 325 YRKRGYDEVISPNMYNSKLWNTSGHWENYSENMFKL-EIEKETFALKPMNCPGHCLIFGS 383

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R F   DA+ F  T +        +F 
Sbjct: 384 KDRSYRELPLRMADFGVVHRNEASGALSGLTRVRRFCQDDAHHFCTT-DQIDSEVAGIFD 442

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG     ++  + P            A+   +                    
Sbjct: 443 FLKTVYGMLGFTY-KLKLSTRPDNYIGDLAVWNEAEKRLSSAL----------------- 484

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D        +      A      +  + D+L    + +   ++    F    ++     
Sbjct: 485 -DKFVGPGEWDVDPGDGAFYGPKIDITISDALKRRHQCATIQLD----FQLPERF----K 535

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             ++   G+    V +    +G++    A++     GK   WP  ++P ++ +I + A  
Sbjct: 536 LQYRTDQGERKRPVMIHRAIMGSVERFTAILTEHFGGK---WPFWLSPRQVLVIPVAA-- 590

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   +++  +L   G     D     +  +    ++  +   ++VGS+ V    V +
Sbjct: 591 -THKAYAQEVAQKLWDAGLYADADMTDATLPKKIRNGEVSSYNFIIVVGSEEVESRSVNV 649

Query: 419 KHRLT----GIREDMSLEEVINYA-----SHRFSNN 445
           +        G  + + LEE +          R  N 
Sbjct: 650 RSADDVGQKGKAQALPLEETLEKFILLKDQRRLENR 685


>gi|57506155|ref|ZP_00372076.1| threonyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57015550|gb|EAL52343.1| threonyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 602

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    Q   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLHIIEEARKRDHRKLGSELKLFT-FDEQIGGGLPIWLSNGTRLRSKLEQMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  A+ W  SG Y +Y + M    + +++     P +      I+++ ++
Sbjct: 254 RGYEPVRGPELLKAEAWKISGHYANYKENMY-FTNIDEQEYGIKPMNCVGHIKIYQNDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILDFVA 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +      +   M   + P           +A     +    +             +   
Sbjct: 372 SLMKIFDFEY-EMEISTRPEKAIGDEAIWEVATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMS 299
           I +                                  R  + G I   F    +++L  +
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTIQVDFNLPERFALEYT 463

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +    + K+  V +    +G+      ++     G+   +   +AP ++ ++ I    +
Sbjct: 464 TS---ENTKERPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPIQVGIVPI---SE 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V     + I   L ++G D    D  E +  +   A+    P+ +++G + +S+  V ++
Sbjct: 515 VHLAYAKGIQRTLLEMGVDSEIYDKNESLSKKIRNAEKQKLPMILVIGDEELSNRAVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++ +SL+E +N    + + 
Sbjct: 575 DRRAKEQKSLSLDEFMNLIKEKINE 599


>gi|111115550|ref|YP_710168.1| threonyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|216263396|ref|ZP_03435391.1| threonyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|122956324|sp|Q0SMD6|SYT_BORAP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110890824|gb|ABH01992.1| threonyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|215980240|gb|EEC21061.1| threonyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 581

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 159/448 (35%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKMEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGIMRARGFTQDDAHII-CTHSQVLDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  S+     + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFNSLKAYLSTKP-----------------DKFVGNDSDWEMSLKVLEEA 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                    I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSGFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P +  +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILIEHYGGAFPLW---LSPIQAVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K++ +    G  +  D+   ++ ++         P   I+G +   + K+ 
Sbjct: 494 --AVEDYAIKVFNKFKNEGMRIKLDNTSSRMNAKIREYQAKKIPYMFIIGEREAKEEKIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L+E +     +  + 
Sbjct: 552 IRTRTNEQINGLELDEALKLILLKIRDK 579


>gi|255071725|ref|XP_002499537.1| predicted protein [Micromonas sp. RCC299]
 gi|226514799|gb|ACO60795.1| predicted protein [Micromonas sp. RCC299]
          Length = 722

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 148/427 (34%), Gaps = 39/427 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y L I +   RD  +    L       H  S G   +LP G K  + +   IRE+  
Sbjct: 279 MAEYKLRIEEAKKRDHRLIG--LNQELFFFHTLSPGSCFFLPQGAKIYNKLMEFIREKYW 336

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + DLW  SG    Y + M    D         P +      +F +  
Sbjct: 337 EYEYDEVITPNVYNFDLWKTSGHAAHYKENMFSF-DVEKAEFGLKPMNCPGHCVMFGNRK 395

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+E      G+ R R F   DA+ F    +  +          
Sbjct: 396 RSFRELPMRLADFGVLHRNEFSGALHGLTRVRRFQQDDAHIF-CRQDQMEKELAAFVKML 454

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   GL    M+  + P G     E                        +E      
Sbjct: 455 DEIYEVFGLTY-EMKLSTRPEGYLGELETW--------------------NKAEAALEAA 493

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +      A      +  +FD+L    + +   ++    F    +++L     
Sbjct: 494 LNGTGKEWKLNPGDGAFYGPKIDITVFDALKRRFQCATVQLD----FQLPIRFNLSY--- 546

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              A+  +  + +    +G++  + A++     GK   WP  ++P ++ ++ I    +  
Sbjct: 547 VSEANEPERPIIIHRAILGSVERMFAILTEHFAGK---WPFWLSPRQVMIVPI---SEQS 600

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           RD   ++ + L K G     DD   ++  +   A L  +   ++VG    ++  V I+ R
Sbjct: 601 RDYAHEVRSVLRKEGFYCEVDDSDRKMQKKVREAQLEQWNYILVVGEGEKTNRTVNIRTR 660

Query: 422 LTGIRED 428
              +  +
Sbjct: 661 DNVVHGE 667


>gi|62126444|gb|AAX64147.1| proline tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 547

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 109/206 (52%), Positives = 145/206 (70%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  F+QIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRNELSSYKQLPLNFFQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y RIF R+GL    ++A++G IGG+
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSRIFSRMGLDFRAVQADTGSIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            SHEF VLA +GE  +  S       
Sbjct: 181 ASHEFQVLAQSGEDDIVFSDVSDYAA 206



 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 341 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 401 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 460

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 461 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 521 YKYRRSGKKSLIKTGDIVDYLVKAIK 546


>gi|189485415|ref|YP_001956356.1| prolyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|226701354|sp|B1H063|SYP_UNCTG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170287374|dbj|BAG13895.1| prolyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 569

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/228 (48%), Positives = 139/228 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK  +P L+E P DA+I S KLM+R+GMI + + G Y  LPLG K L  V  IIR+E
Sbjct: 1   MFFSKMLIPTLKEAPSDADIVSVKLMVRSGMIRKLASGFYELLPLGLKVLRKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+  P +    LW+E+ R+++YGKE+ +L DR D      PT EEV+TD+ R 
Sbjct: 61  MNSAGGQEVIFPLVFPKALWLETDRWNAYGKELFKLKDRKDAEFCLAPTAEEVVTDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ   KFRDE+RPRFGVMRSREFLMKDAYSF       +  Y  MF +
Sbjct: 121 DIKSYKQLPVMLYQFGTKFRDEIRPRFGVMRSREFLMKDAYSFHADEADLEKYYKTMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y  I  + G +   + A SG IGG  SHEF+VL DTGE ++       
Sbjct: 181 YTNICIKCGFQFRAVEAASGVIGGSFSHEFMVLTDTGEEEMTWCSCGY 228



 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/201 (33%), Positives = 110/201 (54%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N     + ++N   +      A    V          + +   +RGIE+GH F  
Sbjct: 353 ALTGANKKDYHLKNVNFKRDYNADIVADIRKVKRGDTCPRCKKEELKFSRGIEIGHTFKL 412

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS  M+A++  A+GK+ ++ MG YGIG  R++AA+IE SHD  GIIW +++APF++ 
Sbjct: 413 GDKYSKSMNASYLDANGKEKFIIMGCYGIGVTRILAAIIEQSHDDDGIIWTNNIAPFEVV 472

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +   D+  ++  EKIY  LS  G DV  DD  E+ G +F  ADL+G P ++ +  K 
Sbjct: 473 IVPLNYADEKTKETTEKIYKELSSKGLDVLIDDRDERAGIKFKDADLIGIPYRITISEKN 532

Query: 411 VSDSKVEIKHRLTGIREDMSL 431
           +++  VE+K R  G  + + L
Sbjct: 533 LANGNVELKARRDGKDDAVRL 553


>gi|260940036|ref|XP_002614318.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238852212|gb|EEQ41676.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 722

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 154/441 (34%), Gaps = 41/441 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++A    H+ + +       ++ S G   WLP G +  + +  ++REE  + G  E+  P
Sbjct: 307 KEASERDHRKIGKEQELFYFNEVSPGSAFWLPHGTRIYNTLVDMLREEYRQRGYEEVITP 366

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG + +Y + M       D      P +      +F+S  +SYR LP+  
Sbjct: 367 NMYNTKLWEISGHWGNYKENMFSFEVEKD-TFGLKPMNCPGHCVLFKSRERSYRELPWRV 425

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F    +  +     +F    +++   G +
Sbjct: 426 ADFGVVHRNEFSGALSGLTRVRRFQQDDAHIF-CEQDQIEQEIAGVFDFLQKVYGTFGFE 484

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A+                         +        E 
Sbjct: 485 F-KMELSTRPEKYVGDLETWNGAEKNLENAL------------------NKFMGEGKWEL 525

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DH 310
                A      + K+ D+L    + +   ++    F    ++ L         +     
Sbjct: 526 NPGDGAFYGPKIDIKISDALRRWFQCATIQLD----FQMPQRFELEYKRDSNSKENSMAR 581

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++   + GK   WP  ++P +I ++ +        +  E++  
Sbjct: 582 PVMIHRAILGSVERMTAILTEHYKGK---WPFWLSPRQILVVPVGVK---YFEYAEQLKD 635

Query: 371 RL-SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-- 427
            L  K       D  G  +  +     +L +    IVG +  ++  V I++R     +  
Sbjct: 636 ELVKKHKFYADVDLSGNTLQKKVRNGQMLKYNFIFIVGEQEQAEHSVNIRNRDIQEEQGK 695

Query: 428 --DMSLEEVINYASHRFSNNR 446
              +  EEV+   +      R
Sbjct: 696 NATVKFEEVVAQLTKLKEELR 716


>gi|159903050|ref|YP_001550394.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|226701318|sp|A9BED0|SYP_PROM4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159888226|gb|ABX08440.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 600

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/237 (46%), Positives = 148/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I + + GIY++LPL  + +  +N IIREE
Sbjct: 1   MRVSRLMLVTLRDAPADAEIISHQLLIRGGFIKRITSGIYAYLPLMWRVIQKINCIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  G +E  +P L  +DLW ++GR++ Y      M  L DR  + +  GPTHEE++T I
Sbjct: 61  LNAKGCLEALLPQLHPSDLWKKTGRWEGYTAGEGIMFNLKDRQGRELGLGPTHEEIITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               + SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    E  K SY  M
Sbjct: 121 AGESLHSYKQLPVNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANEEDLKTSYASM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y +IF R G+K++ + A+SG IGG  S EF+V AD GE  +  SKD        
Sbjct: 181 DDAYRKIFERCGIKTVAVEADSGAIGGAASQEFMVTADAGEDLILISKDGKYAANQE 237



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 110/269 (40%), Gaps = 9/269 (3%)

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             R GL +IP     G IG DL    +  A +   +     D     +       +    
Sbjct: 335 LDRQGLINIPF----GSIGPDLEDVMLSNASSWNKKFVRFADKTAAELELFVCGANKTEQ 390

Query: 245 LNSIVEQWT----APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +                             +   +  RGIEVGHIF  G KYS  + A
Sbjct: 391 HRAFSSWSDVGGLPKVVDIRKAKPGDQCFYDNKQFLIEKRGIEVGHIFQLGRKYSSSLEA 450

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F    G      MG YGIG  R+  A +E SHD  GIIWP S++PF++ ++     D+V
Sbjct: 451 NFTNEKGSSEPFWMGCYGIGVSRIAQAAVEQSHDQSGIIWPLSISPFEVIIVIANIKDEV 510

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E IY +L   G DV  DD  E+ G +F  ADL+G P +V+VG +  S  KVE+  
Sbjct: 511 QNRLGEDIYKQLRHKGIDVLLDDRDERAGVKFKDADLIGIPWRVVVG-RDSSSGKVELLK 569

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R     + +  E V+       S  +  +
Sbjct: 570 RSDRSVKLIESEIVVKELIAEISRKKSSI 598


>gi|34557905|ref|NP_907720.1| prolyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
 gi|81832821|sp|Q7M8L1|SYP_WOLSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34483623|emb|CAE10620.1| PROLYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 570

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 147/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F P L+E P+DA + SH+ ++R G I Q   GIY++LPLG++ +D +  +++EE
Sbjct: 1   MRFSAFFAPTLKEAPKDATLKSHEYLIRGGYIQQVGSGIYNFLPLGKRVMDKIRQVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +  +  A+LW  SGR++ YGKE+LR  DR +   + GPTHEE++ ++ + 
Sbjct: 61  MDQAGAQEVMLGFVTPAELWRNSGRFEKYGKELLRFKDRKENDFVLGPTHEEMVVELAKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE+RPRFG+MR REF+MKD YSF          +  M  +
Sbjct: 121 YVKSYKQLPLHLYQIHLKFRDEIRPRFGLMRGREFVMKDGYSFHANEADLIREFELMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    + A+SG IGG  S EF+VLA +GE  +          
Sbjct: 181 YKRIFTRLGLDFRVVEADSGAIGGSGSKEFMVLAQSGEDTIAVCDSCEYAA 231



 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 95/177 (53%), Gaps = 1/177 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E     L E +    +GIEVGHIF  GT+YS P+ A F   +GK   + MG YGIG  R+
Sbjct: 395 EGDGCPLCEGRLTYKKGIEVGHIFQLGTRYSEPLGANFLNPEGKSQPLVMGCYGIGVSRL 454

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AAVIE  HD KG IW  S APF + ++     D   +   E +Y  L K G +V  DD 
Sbjct: 455 LAAVIEQHHDEKGCIWTKSTAPFNLVIVVSNVKDPSQKAYAENLYNALQKEGIEVLLDDR 514

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            E+ GS+ A  +LLG P  VIVG K + + +VE+ +R    +  +  ++++      
Sbjct: 515 DERYGSKMADFELLGIPYAVIVG-KGLIEGQVELVNRANLQKGIVLADDILGRILEL 570


>gi|324998197|ref|ZP_08119309.1| prolyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 577

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 117/386 (30%), Positives = 172/386 (44%), Gaps = 31/386 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG K L  +  ++REE +
Sbjct: 1   MSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLKVLRRIENVVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L   + +  + R+  YG  + R+ DR     + GPTHEE+ T   +   
Sbjct: 61  AMGGQEIQFPALLPREPYEATNRWTEYGPALFRIQDRKGGDYLLGPTHEELFTLAVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY K   +Y+
Sbjct: 121 SSYKDYPVVLYQIQTKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLSESYGKHRDTYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RL LK + + A SG +GG  S EF+  ++TGE             + +  T     
Sbjct: 181 RIFDRLALKYVIVAATSGAMGGSASEEFLAESETGEDTFVRGPGGYAANVEAVTTPAPPA 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I L+ +          T                           I    T  +     TF
Sbjct: 241 IPLDGLPAAQVHHTPDTP-------------------------TIETLVTYLNEHTDRTF 275

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             AD   + +            +V   +    +        ++ P ++ L  ++  D   
Sbjct: 276 TAADTLKNVLVKTRQPGAERWELVGVGVPGDREVDMKRLEAALEPAQVEL--LEEADFAR 333

Query: 362 RDACEKIY---ARLSKVGCDVFWDDM 384
                K Y   A L+  G     D  
Sbjct: 334 NAFLVKGYIGPAALAANGVRYLVDPR 359



 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 2/160 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+   S    G D K   + MGSYGIG  R+VAA+ E  HD  G++
Sbjct: 414 RGIEIGHIFQLGRKYADAFSLDALGPDSKPVRITMGSYGIGVSRLVAAIAEQCHDDSGLV 473

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP SVAPF + ++ +        +  E + A L   G  V  DD     G +FA A+L+G
Sbjct: 474 WPRSVAPFDVHVV-VAGKSAELLEGGEVLAAELEAEGLSVILDDRKASPGVKFADAELVG 532

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            P  V+VG + ++D K+E+K R TG R ++  +    + +
Sbjct: 533 VPTIVVVG-RGLADGKIELKDRATGERTEIPRDGAAAHVA 571


>gi|282861434|ref|ZP_06270499.1| prolyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282564092|gb|EFB69629.1| prolyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 566

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 100/230 (43%), Positives = 139/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R G + + + G++SWLPLG+K L+NV+ ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLNHKLLVRAGYVRRTAAGLWSWLPLGKKVLENVSRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  SGRYD YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGGQEVLLPALLPKEPYEASGRYDEYGDLLFRLRDRKGAEYLLGPTHEEIFTQVVKDM 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 CSSYKDLPVILYQIQTKYRDEARPRAGVLRGREFQMKDSYSFDTTDEGLAESYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +RIF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 186 IRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAPAGEDTFVDCPNCDYAA 235



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 6/180 (3%)

Query: 265 EKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P         R IE+GHIF  G KY+   S    G  GK   V MGSYGIG  
Sbjct: 389 VEPGDPCPRCGTGLQVDRAIEIGHIFQLGRKYADIFSLDVLGQQGKPVRVTMGSYGIGVS 448

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R VAA+ E + D KG+ WP  VAP  + ++   A   +  +    +  +L   G  V  D
Sbjct: 449 RAVAALAEQTADDKGLCWPREVAPADVHVV--AAGKALQTELALDVSEKLGAAGLRVIVD 506

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G   G +F  ++L+G P  ++ G +      +E+K R TG RE+++++E +   + +
Sbjct: 507 DRAGVSPGVKFTDSELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVDEALARLTDQ 565


>gi|184201017|ref|YP_001855224.1| threonyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|183581247|dbj|BAG29718.1| threonyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 718

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/462 (16%), Positives = 146/462 (31%), Gaps = 55/462 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLM-LRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L   +E   +AE   H+ + +   +     +   G+  + P G      +    RE
Sbjct: 247 SKDELKAYKERLAEAERRDHRKLGVELDLFSFPDELGSGLPVFHPKGGIIRKEMEDYSRE 306

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------------AMIY 106
              R G   +  P +    L+  SG  D Y   M      +++                 
Sbjct: 307 RHARAGYEFVYTPHITKGHLYEVSGHLDWYRDGMFPPMHVDEERDPDTGELTKPGQDYYL 366

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   I+RS  +SYR LP   ++    +R E      G+ R R     DA+ +  
Sbjct: 367 KPMNCPMHNLIYRSRGRSYRELPLRLFEFGAVYRYEKSGVIHGLTRVRGMTQDDAHIY-C 425

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCS 224
           T E  K          L +    G++   +   +  P     S E    A     +V   
Sbjct: 426 TREQMKGELTNTLNFVLSLLKDYGMEDFYLELSTKDPNKFVGSDEIWDEATRTLREVAED 485

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 P P+                      A      + +  D++    ++S   ++ 
Sbjct: 486 SGLELVPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD- 524

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
              F    ++       ++ +DG +   V +     G++     V+   + G    W   
Sbjct: 525 ---FNLPERF----DLEYQASDGSRRRPVMIHRALFGSVERFMGVLTEHYAGAFPAW--- 574

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           ++P ++  I +    +   D  ++    L + G  V  D   ++   +   A     P  
Sbjct: 575 LSPVQVRAIPVA---EAFNDYLDEFAQTLRERGIRVEVDTSSDRFPKKIRTASKDKIPFV 631

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           VI G +      V  + R       +S  E +   +   +  
Sbjct: 632 VIAGGEDAEAGTVSFRFRDGSQHNGVSQAEAVELIARHVAER 673


>gi|282864200|ref|ZP_06273256.1| threonyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282560687|gb|EFB66233.1| threonyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 658

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 143/448 (31%), Gaps = 41/448 (9%)

Query: 3   RSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K  L  L+E   RD     ++L L +    +   G+  + P G      +    R   
Sbjct: 244 QLKAHLEFLEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRH 302

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRS 120
              G   +  P      L+ +SG  D Y   M      +D       P +  +   IF +
Sbjct: 303 EEEGYEFVYSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDA 362

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP   ++    +R E      G+ RSR F   DA+ +  T E      ++   
Sbjct: 363 RGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTREQMAEELDRTLT 421

Query: 180 SYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             L +    GL    +   +  P     S E    A     QV   +     P P     
Sbjct: 422 FVLNLLRDYGLTDFYLELSTKDPEKFVGSDEAWEEATETLRQVAEKQGLPLVPDPG---- 477

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + +  D++    ++S   ++    F    ++    
Sbjct: 478 ----------------GAAFYGPKISVQCKDAIGRTWQMSTVQLD----FNLPERF---- 513

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G DG K   V +     G++    AV+   + G   +W   +AP +   I I   
Sbjct: 514 DLEYTGPDGTKQRPVMIHRALFGSIERFFAVLLEHYAGAFPVW---LAPVQAVGIPIG-- 568

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   ++  A   K G  V  D   +++  +         P  VIVG   ++   V 
Sbjct: 569 -DTHIPYLQEFAAEARKKGLRVEVDASSDRMQKKIRNHQKAKVPFMVIVGDDDMNAGTVS 627

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +HR       +  +E I          
Sbjct: 628 FRHRDGSQENGIPRDEAIAKLVDLVERR 655


>gi|315226277|ref|ZP_07868065.1| proline--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|315120409|gb|EFT83541.1| proline--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 590

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 100/243 (41%), Positives = 142/243 (58%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG K L+ + AIIREE N
Sbjct: 1   MSTLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLKVLNKIEAIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + +   
Sbjct: 61  ALGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K SY     +Y 
Sbjct: 121 TSYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKSYLAERAAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIFHRL +  + + A SGP+GG  S EF+     GE     +     + + +  T   D 
Sbjct: 181 RIFHRLAVDYVIVHAVSGPMGGSESEEFLAPLPIGEDTFALAPSGKAWNVEALTTPAMDP 240

Query: 243 ISL 245
           +  
Sbjct: 241 VDY 243



 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  M       +GK   V MG YGIG  RV++ + E+ HD KG+I
Sbjct: 425 RGVEIGQVFQLGLKYSKAMGLNVLNQNGKAVPVWMGCYGIGVSRVMSCIAEAHHDDKGLI 484

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP SVAP ++ LI     DQ   D  E +   L K   +V +DD  +   G +F  ++LL
Sbjct: 485 WPLSVAPAQVHLIA-TGKDQKAYDLAESLLGDLEKADVEVLYDDRAKMSPGVKFKDSELL 543

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P+ V+VG   +SD  VEI++R TG ++ + L++         
Sbjct: 544 GLPMIVVVGRDTLSDGTVEIRNRATGEKDVVPLDQAAQAVQDLL 587


>gi|31794022|ref|NP_856515.1| prolyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638725|ref|YP_978949.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224991217|ref|YP_002645906.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|81834897|sp|Q7TXQ5|SYP_MYCBO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112932|sp|A1KMI8|SYP_MYCBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|31619616|emb|CAD95055.1| PUTATIVE PROLYL-TRNA SYNTHETASE PROS (PROLINE--TRNA LIGASE) (PRORS)
           (GLOBAL RNA SYNTHESIS FACTOR) (PROLINE TRANSLASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494373|emb|CAL72854.1| Putative prolyl-tRNA synthetase proS [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774332|dbj|BAH27138.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 582

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 135/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y     +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYRAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  + +GE      
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRC 226



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  G
Sbjct: 417 MARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+L
Sbjct: 477 LRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 536 LGMPWIVVVG-RGWADGVVELRDRFSGQTREL 566


>gi|300787200|ref|YP_003767491.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299796714|gb|ADJ47089.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 675

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 139/442 (31%), Gaps = 36/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 253 YLERIAEAERRDHRKLGAELDLFS-FPEEIGSGLPVFHPKGGIIRRELENYSRRRHEEAG 311

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              ++ P +   +L+  SG    Y   M      +++       +  +   IFRS  +SY
Sbjct: 312 YEFVNTPHISKGELFHTSGHLPYYADTMFPPVQFDEENYYLKAMNCPMHNLIFRSRGRSY 371

Query: 126 RNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP   ++    +R E      G+ R R   M D++ +  T E        +    L +
Sbjct: 372 RELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDSHIY-CTKEQMPGELRSLLKFVLDL 430

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   +         E     +  ET    + D     +P           
Sbjct: 431 LADYGLSDFYLELSTRGDSDKFIGEDWEWEEATETLRQAAVDSGLELVPDPGGA------ 484

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + +  D++    ++S   ++      FG +Y+ P       
Sbjct: 485 ------------AFYGPKISVQAKDAIGRTWQMSTIQLDFNQNKRFGLEYTAP------- 525

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG     V +     G++     V+   + G    W   ++P ++  I I A      +
Sbjct: 526 -DGSRQTPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LSPVQVVGIPITAD---QVE 578

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L   G     D   +++  +         P  ++ G+K V    V  + R  
Sbjct: 579 YLQDVEKALRAKGLRAEVDASDDRMQKKIRTHTTQKVPFMLLAGAKDVEAGAVSFRFRDG 638

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    + +E+ +   +      
Sbjct: 639 GQINGVPVEKAVEAIAEWVERR 660


>gi|152993995|ref|YP_001359716.1| threonyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166225510|sp|A6QD00|SYT_SULNB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151425856|dbj|BAF73359.1| threonyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 604

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 153/447 (34%), Gaps = 45/447 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      ++ L      +   G+  W+P G K    +  I+ +    
Sbjct: 197 KSYLKMMEEAKKRDHRKIGTEMELFM-FNEESGAGLPFWMPQGAKLRYKLEQILHKAHLV 255

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                +  P +  AD+W  SG Y  YG+ M  L + + +     P +      IF+   K
Sbjct: 256 RDYEPVRGPEILKADMWRTSGHYACYGENMY-LTEIDGQEYGIKPMNCIGHIQIFKQTQK 314

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +Y+  +  R E      G++R REF   DA+ F   PE       ++     
Sbjct: 315 SYRDLPVKYYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCA-PEQIASEVLEVVEFVD 373

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +      +   M   + P       E    A  G        D            +   
Sbjct: 374 SVMKLFEFEY-TMEISTKPEKAIGDDEVWETATQGLKDALKGNDLPYTIDEGGGAFYGPK 432

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 433 IDIKITDA---------------------------IGRKWQCGTI---QVDFNLPERFDV 462

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D  +   V +    +G+      ++   + G+   +   +AP ++  + I    +
Sbjct: 463 EYVAEDNSRKRPVMLHRAILGSFERFIGILTEHYAGEFPFF---IAPTQVIFVPI---SE 516

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +  +L   G D    D  + +  +   A+    P  VI+G + V ++ V I+
Sbjct: 517 GHAGYAYGLKKKLMLEGIDSEVSDKNDSLNKRIRTAEKQRVPYVVIIGDEEVQNNTVAIR 576

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
           +R T  + +++ +E +   + +    +
Sbjct: 577 NRRTREQYNLTQDEFMVELTKQLQEGK 603


>gi|116491012|ref|YP_810556.1| prolyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|122276806|sp|Q04F81|SYP_OENOB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116091737|gb|ABJ56891.1| Prolyl-tRNA synthetase [Oenococcus oeni PSU-1]
          Length = 570

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 108/246 (43%), Positives = 151/246 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  +E P +A++ SH  MLR G I Q + GIY++LPL  + ++ + +IIREE
Sbjct: 1   MKQSKIFIPTEKEVPAEAQVKSHIFMLRAGFIRQVAGGIYAYLPLANRIINKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  A EM +P +  A+LW ESGR+ +YG +M +L DR+D+  I  PTHEE  T I   
Sbjct: 61  MNRIDANEMLMPEMIPAELWKESGRFYTYGPQMYQLKDRHDREFIMAPTHEETFTKIISD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDELRP+ G++R REF+MKDAYSF    +G   +Y+ +  +
Sbjct: 121 EIKSYKKLPLILYQIQQKFRDELRPKNGLLRGREFIMKDAYSFSSDQKGLDDAYDLIESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    + A+SG +GG  S EF  +A TGE  +  S             +F 
Sbjct: 181 YKRIFDRVGLDYREIIADSGSMGGKDSAEFQAIAATGEDIIAYSNSGKYAANIEMAEEFF 240

Query: 241 DIISLN 246
           +    +
Sbjct: 241 EKKIPD 246



 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                     E       + K V  +GIE+GHIF  GT Y+  M    +   GK   + M
Sbjct: 380 FETGDFLTAKEGSISPDGKGKLVFTKGIEIGHIFKLGTFYTSKMGGQIQNEKGKLSDIIM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R+++A+ E S+D KG IWP +VAPF + LI +   ++   +  ++I   L +
Sbjct: 440 GCYGIGISRLLSAIAEQSNDPKGFIWPKAVAPFNVHLITMNTKNESQVNLTKQIDKNLQE 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G +FA +DL+G P++V+VG +      VE+K R      D+S + +
Sbjct: 500 AGFEVLVDDRKERPGVKFADSDLIGIPIRVVVG-RQADQQIVEVKARGQESTNDVSTDNL 558

Query: 435 INYASHRFSNNR 446
           I +   + +  +
Sbjct: 559 IAFLKDKLNELK 570


>gi|269219392|ref|ZP_06163246.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211185|gb|EEZ77525.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 709

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 156/461 (33%), Gaps = 50/461 (10%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +K  L   Q+   +AE   H+     L L +    +   G+  + P G      V + + 
Sbjct: 237 TKDELAAYQKRIAEAERRDHRRLGAELDLFS-FPEEIGPGLVVFHPKGGILRHIVESYVT 295

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIY 106
                 G   +  P +    L+  SG    Y   M      +++                
Sbjct: 296 RRHLEEGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMKVDEERGADGEVTRAGQDYYL 355

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 356 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-C 414

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           TPE +K     +   +L I    GL    +   +   G                  F   
Sbjct: 415 TPEQAKGEIEMLLNFFLDILRDFGLTDFYLELSTRDEGKK-------------KDKFIGS 461

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D           +      L+ + +      A      + ++ D+L    ++S    +  
Sbjct: 462 DEDWAAATRILEEACAATGLDLVPD--PGGAAFYGPKVSVQVKDALGRTWQMSTVQYDFN 519

Query: 286 HIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
               F  +Y+ P        DG +   V + S  +G++     V+   + G    W   +
Sbjct: 520 QPERFDLEYTAP--------DGSRRRPVMIHSAKLGSVERFIGVLTEHYAGAFPAW---L 568

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP +  L+ +    +     CE++ A+L   G  V  D   ++ G +   A     P  +
Sbjct: 569 APVQARLVPVA---EAFNPYCEEVAAKLRAAGIRVDVDLSDDRFGKKIRNAAKEKIPFTL 625

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           I G +      V  ++R       +S++E + +     +  
Sbjct: 626 IAGGEDAEAEAVSFRYRDGHQENGVSVDEAVAHIGRVVARR 666


>gi|145295898|ref|YP_001138719.1| prolyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|166980117|sp|A4QF01|SYP_CORGB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|140845818|dbj|BAF54817.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 588

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + GIYSWLPLG +A+ N+ A++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGIYSWLPLGLRAVRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPALLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAATVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD++  G   SY K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMSDAGLDESYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLGL+    +A SG +GG  S EF+ +++ GE     S
Sbjct: 184 QRIFDRLGLEYAICQATSGAMGGSASEEFLAVSENGEDTFVRS 226



 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+          +GK     MGSYG+G  R++A + E  HD  G+ 
Sbjct: 423 RGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGLGVTRLLAVLAEQRHDDAGLN 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           W   VAP+++ ++     D    +A E+  A LS  G DV +DD  +   G +F  A+LL
Sbjct: 483 WSVEVAPYQVHVVAAN-KDAAAIEAAERFAAELSAAGLDVLFDDRPKVSPGVKFKDAELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P  +I+G +  ++ KVE++ R  G + ++  ++ +       +  R
Sbjct: 542 GMPFALILG-RGYAEGKVELRVRG-GEKSELDADQAVAQIVEMVAQAR 587


>gi|156042356|ref|XP_001587735.1| hypothetical protein SS1G_10975 [Sclerotinia sclerotiorum 1980]
 gi|154695362|gb|EDN95100.1| hypothetical protein SS1G_10975 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 791

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/482 (17%), Positives = 157/482 (32%), Gaps = 64/482 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD               H+ S G   WLP G +  + + + +REE
Sbjct: 313 MAEHKKFL--EEAAKRDHRKLGK--DQELFFFHELSPGSAMWLPHGARIYNTIQSFLREE 368

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +++LW  SG +  Y  +M       D      P +      +F  
Sbjct: 369 YWKRGYNEVITPNMYNSELWKTSGHWAYYKDDMFTFPVEKD-VFALKPMNCPGHCLMFGH 427

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP+      +  R+E      G+ R R F   DA+ F    +  K     +F 
Sbjct: 428 RERSHRELPWRVADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CREDQIKDEITGLFD 486

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+  LG     ++  + P       E   +A+             D  +P E  + 
Sbjct: 487 FLRAIYGLLGFTF-KLKLSTRPEKFLGKIETWDMAEDKLRSALDEFASSDGGVPWELNEG 545

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---- 295
           D                A      +  + D L    + +   ++      FG +Y+    
Sbjct: 546 DG---------------AFYGPKIDITICDCLKREWQCATIQLDFQLPQNFGLEYNTGDV 590

Query: 296 --------------------LPMSATFKGA-------DGKDHYVQMGSYGIGAMRVVAAV 328
                                P                G    V +     G++    A+
Sbjct: 591 PTKKEEAAVKEPVVKPKKDTEPEDPNVPKERVYKPLTPGCARPVMIHRAMAGSIERFTAI 650

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     GK   WP  ++P +I +I +        +  +++ +   K    +  D  G  +
Sbjct: 651 LIEHFAGK---WPFWLSPRQILVIPVGVG---YFEYAKEVQSIFHKQQMFIDVDLSGNTL 704

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSN 444
             +     L  +    +VG   ++  +V +++R     +D    +SL+E I   +     
Sbjct: 705 QKKIRTGQLAQYNFIFVVGDTEMNGREVNVRNRDDTSSQDRGKPVSLQEAIEKLTALRDE 764

Query: 445 NR 446
            R
Sbjct: 765 RR 766


>gi|146420108|ref|XP_001486012.1| hypothetical protein PGUG_01683 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146389427|gb|EDK37585.1| hypothetical protein PGUG_01683 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 719

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 152/435 (34%), Gaps = 43/435 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++A    H+ + R       ++ S G   WLP G +  + +  ++R E  +    E+  P
Sbjct: 308 KEAADRDHRKIGREQELFFFNEMSPGSAFWLPHGTRIYNRLVDLMRSEYIQRDFQEVITP 367

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y + M    D    +    P +      IF+S  +SYR LP+  
Sbjct: 368 NMYNSKLWETSGHWGNYKENMFTF-DVEKDSFGLKPMNCPGHCLIFKSRERSYRELPWRV 426

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T E  +      F    +++   G +
Sbjct: 427 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTEEQIEDEIAGCFDFLQKVYGIFGFE 485

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P                  + +  +        ++     +        E 
Sbjct: 486 F-KMELSTRP------------------EKYVGELETWNNAEAKLESALNKFLGEGKWEL 526

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L  + + +   ++    F    ++ L   A           
Sbjct: 527 NPGDGAFYGPKIDIMISDALKRSFQCATIQLD----FQLPNRFELEFKAETSS---HARP 579

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  +AA++     G    WP  ++P +I ++ +        D  + I  +
Sbjct: 580 VMIHRAILGSVERMAAILTEHFKG---RWPFWLSPRQILVVPVGVK---YNDYAQSIQQK 633

Query: 372 L-SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIR 426
           L          D  G  +  +     LL +    IVG +  ++  V I++R      G  
Sbjct: 634 LSKDHAFYADVDLSGNTLQKKVRSGQLLQYNFIFIVGEQEQAEQSVNIRNRDIQSEQGKN 693

Query: 427 EDMSLEEVINYASHR 441
           E +   +V+      
Sbjct: 694 ETVKFGDVVKQLKSL 708


>gi|170095495|ref|XP_001878968.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646272|gb|EDR10518.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 721

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 158/438 (36%), Gaps = 43/438 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A    H+ + +       +  S G   +LP G +  +++  ++R E  + G  E+  P
Sbjct: 312 AEAAKRDHRKIGKDQELFFFNDLSPGSCFFLPHGTRIYNSLVELMRSEYFKRGYQEVISP 371

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++ LW  SG + +Y  +M  L D   +     P +      IF S  +SY+ LP   
Sbjct: 372 NMYNSKLWETSGHWQNYKDDMF-LLDVEKEKWALKPMNCPGHCLIFDSRDRSYKELPIRM 430

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  +  R+E      G+ R R F+  D + F + P   +   + +F     I+   G  
Sbjct: 431 AEFGIIHRNEASGALTGLTRVRRFVQDDTHVFCM-PSQLEEEISMLFDFMQHIYGLFGFD 489

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     + E    A+              + +   +  F       +I   
Sbjct: 490 FR-LELSTRPDNYLGTIETWDQAEAQLKLALEKHYPGKWDLNPGDGAFYGPKIDITIR-- 546

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                            D+L  + + +   ++      F  KY     A        +  
Sbjct: 547 -----------------DALRRSFQCATIQLDFQLPERFNLKYRSAEEAH-------NRP 582

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++    A+I     GK   WP  ++P ++ +I + A     ++   +I  R
Sbjct: 583 VIIHRAILGSLERFIAIITEHFAGK---WPFWISPRQVLVIPVAA---PYKEYAAEITER 636

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIRED 428
           L+ +G     D+    +  +    ++  +   ++VG + +    V +++R    T  + +
Sbjct: 637 LTSLGLFADVDNGENTLPKKIRNGEIAQYNFILVVGQEELDARSVNVRNRDDVGTKAKGE 696

Query: 429 M-SLEEVINYASHRFSNN 445
           M  L  ++        + 
Sbjct: 697 MVPLNLIVEKLVALKKSR 714


>gi|242309901|ref|ZP_04809056.1| prolyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523198|gb|EEQ63064.1| prolyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 578

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 154/231 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+P L+E P+D  + SH+ +LR G I Q   GIY++LPLG++ LD ++ I+++E
Sbjct: 1   MRFSNFFIPTLKETPKDVVLKSHEYLLRGGFIQQIGSGIYNFLPLGKRVLDKISKIVKQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRY+ YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDNAGANEVLLGCVTPASLWQASGRYERYGKELLRFKDRKENEFVFGPTHEETITELVKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K  +++M  +
Sbjct: 121 YVKSYKQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSSYEDLKREFDEMERT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF +LGL    + A+SG IGG  S EF+VLA++GE  +    +     
Sbjct: 181 YSVIFSKLGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTICVCDNCSYAA 231



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 1/174 (0%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +      +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG  R++AA
Sbjct: 400 CKKCQKGHLYFTKGIEVGHIFQLGEKYSQAMGATFLDENGKSKPFIMGCYGIGISRLLAA 459

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +IE  +D KG+ W  + APF + ++     D    +   +IY  LS+   +   DD  E+
Sbjct: 460 IIEQHYDEKGMKWTKATAPFLLDIVISNVKDCEQVELATRIYHALSEQKIECLLDDRNER 519

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G++ A  +L+G P  +IVG K + + KVE+  R    +    + +   +    
Sbjct: 520 YGAKMADFELIGMPYALIVG-KGIQEGKVELVCRANLEKTMFEVNDFEGFLESL 572


>gi|196012975|ref|XP_002116349.1| hypothetical protein TRIADDRAFT_50865 [Trichoplax adhaerens]
 gi|190580940|gb|EDV21019.1| hypothetical protein TRIADDRAFT_50865 [Trichoplax adhaerens]
          Length = 680

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 170/450 (37%), Gaps = 54/450 (12%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++E  +   +A    H+ + R        + S G   +LP G      +  ++R++  + 
Sbjct: 267 MKEWKKFQEEAAKRDHRKIGRDQELFFFSELSPGSCFFLPRGAHIYGILMQLMRDQYRKR 326

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S+ LW+ SG +  Y  +M    D         P +      +F    +S
Sbjct: 327 GFHEVLSPNIYSSKLWMTSGHWQHYKDDMFTF-DVEKDQFGLKPMNCPGHCVMFSHRPRS 385

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP  + +  +  R+EL     G+ R R F   DA+ F    +  K            
Sbjct: 386 WRELPLRYAEFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCRD-DQVKDEIKGCLDFLKY 444

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFI---VLADTGETQVFCSKDFMDFPIPSENTDFD 240
           I+  LG + + +   + P       EF+      D  E Q+  S D        +  D  
Sbjct: 445 IYDTLGFQ-LKLFLSTRP------DEFMGEIATWDRAEQQLRESLDEFGLKWGLKEKDG- 496

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + ++ D+L    + +   ++    F   T+++L    
Sbjct: 497 ----------------AFYGPKIDIQVLDALRRPHQCATIQLD----FQLPTRFNL---- 532

Query: 301 TFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T+ G +G D    V +    +G++  + AV+  +  GK   WP  ++P +  +I + A  
Sbjct: 533 TYVGKNGDDTLRPVIIHRAILGSVERMIAVLCENFAGK---WPFWLSPRQAMVIPVAAK- 588

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   ++  +L   G  V  D   G+ +  +   A L  +   ++VG K   +  V 
Sbjct: 589 --FDEYALQVRDQLHSAGFYVDVDLAPGDTMNKKVRNAQLAQYNFSMVVGQKECENKSVN 646

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           ++ R   +  + ++ +VI       + ++ 
Sbjct: 647 VRSRNNQVYGEQTIVKVIERF-EELNKSKA 675


>gi|296122745|ref|YP_003630523.1| prolyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015085|gb|ADG68324.1| prolyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 590

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/234 (49%), Positives = 156/234 (66%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P L+ENP DAEI SH+LMLR G + Q   G Y++LPLG +++  + AIIREE
Sbjct: 1   MRWSQSFIPTLKENPSDAEIPSHQLMLRAGYVRQLMAGAYTYLPLGWRSIRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDI 117
            + TGA+EM +P LQ  DL+  +GR +++G  ++    R   +   +  GPTHEEV+TD+
Sbjct: 61  MDATGALEMLMPALQPIDLFERTGRKEAFGNVLINFNIRRQNHQVHLALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              HI SYR LP T YQIQ KFR+E RPRFGV+R+ EF+MKDAYSF  + E    +Y K+
Sbjct: 121 MSRHISSYRQLPMTVYQIQTKFRNEERPRFGVLRTSEFIMKDAYSFHSSVESLSETYQKI 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + +Y RIF R GL+ +P+ AESGPIGGD SHEF+  A  GE Q+   +      
Sbjct: 181 YRAYCRIFARCGLEYLPVEAESGPIGGDASHEFMAPAANGEDQIVFCRKTRYAA 234



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 2/193 (1%)

Query: 256 YAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
              T D+ N    D  P  +       GIEVGH+F  GTKYS+ ++AT+         + 
Sbjct: 389 EYETFDLRNAAAGDPSPRGEGTLELVHGIEVGHVFKLGTKYSVSLNATYDDEAATRQPLI 448

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R++A++ E+  D  G++ P S+AP+ + +  I  +D    +   ++   L+
Sbjct: 449 MGCYGIGVNRILASMAETKFDDNGLVLPLSIAPYSVVISTIGVNDPEVDEVVNQLEKELT 508

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G D+  DD  ++ G +F  ADL+G PL+V++G K + + +VE+K R       + +  
Sbjct: 509 AAGVDLLIDDRDQRPGVKFKDADLIGIPLRVVIGGKGLKEGQVELKWRHLPEATKIPVTG 568

Query: 434 VINYASHRFSNNR 446
                  + +  R
Sbjct: 569 AAQAILDQLATRR 581


>gi|227544954|ref|ZP_03975003.1| prolyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300910015|ref|ZP_07127475.1| proline--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227185065|gb|EEI65136.1| prolyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300892663|gb|EFK86023.1| proline--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 577

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/244 (44%), Positives = 148/244 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEAPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +       I    + F 
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDGDYAANIEKAESKFT 240

Query: 241 DIIS 244
            +  
Sbjct: 241 GVQQ 244



 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 138/305 (45%), Gaps = 22/305 (7%)

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            I     DE +P   +MR  + + +   +  L  E  + +  +    YL           
Sbjct: 282 YIAKMSEDEYQPVLVLMRGDDEVNEAKVTNALDCEELELATEEDAEKYLN---------- 331

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                 GP+G  +  E  +LAD         K  ++    +    +  I +      +  
Sbjct: 332 AHPGSLGPVG--VGEEVKILADN------YVKVLVNMACGANEDGYHYINANIDRDFRVD 383

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                 +    E   D  P        GIE+GHIF  GT YS  + A    ++G+   V 
Sbjct: 384 QFGDFRNVKEGEIAPDGKPLKFTP---GIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVI 440

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R+++AV E + D  G++WP+S+APF + +I + A  +      +KI  +L+
Sbjct: 441 MGSYGIGVTRLLSAVAEQNADENGLVWPNSIAPFDVHVIPVNAKKEDQMAMADKIDQQLT 500

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA +DL+G P++V VG K   D  VEIK R TG   ++  EE
Sbjct: 501 EAGYEVLVDDRKERAGVKFADSDLIGIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEE 559

Query: 434 VINYA 438
           ++N  
Sbjct: 560 LVNTV 564


>gi|19553198|ref|NP_601200.1| prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62390834|ref|YP_226236.1| prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|81847611|sp|Q8NP31|SYP_CORGL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21324764|dbj|BAB99387.1| Prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41326172|emb|CAF20335.1| PROBABLE PROLYL-TRNA SYNTHETASE PROTEIN [Corynebacterium glutamicum
           ATCC 13032]
          Length = 588

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + GIYSWLPLG +A+ N+ A++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGIYSWLPLGLRAVRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPALLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAATVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD++  G   SY K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDISDAGLDESYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLGL+    +A SG +GG  S EF+ +++ GE     S
Sbjct: 184 QRIFDRLGLEYAICQATSGAMGGSASEEFLAVSENGEDTFVRS 226



 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+          +GK     MGSYG+G  R++A + E  HD  G+ 
Sbjct: 423 RGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGLGVTRLLAVLAEQRHDDAGLN 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           W   VAP+++ ++     D    +A E+  A LS  G DV +DD  +   G +F  A+LL
Sbjct: 483 WSVEVAPYQVHVVAAN-KDAAAIEAAERFAAELSAAGLDVLFDDRPKVSPGVKFKDAELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P  +I+G +  ++ KVE++ R  G + ++  ++ +       +  R
Sbjct: 542 GMPFALILG-RGYAEGKVELRVRG-GEKSELDADQAVAQIVEMVAQAR 587


>gi|154300294|ref|XP_001550563.1| hypothetical protein BC1G_11336 [Botryotinia fuckeliana B05.10]
 gi|150856659|gb|EDN31851.1| hypothetical protein BC1G_11336 [Botryotinia fuckeliana B05.10]
          Length = 787

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 155/483 (32%), Gaps = 65/483 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD               H+ S G   WLP G +  + + + +RE+
Sbjct: 313 MAEHKKFL--EEAAKRDHRKLGK--DQELFFFHEMSPGSAMWLPHGARIYNTIMSFLREQ 368

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + +++LW  SG +  Y  +M       D      P +      +F  
Sbjct: 369 YWTRGYEEVITPNMYNSELWKTSGHWAYYKDDMFTFPVEKD-TFALKPMNCPGHCLMFGH 427

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP+      +  R+E      G+ R R F   DA+ F    +  K     +F 
Sbjct: 428 RERSHRELPWRVADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CREDQIKDEITGLFD 486

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+  LG     +   + P       E   +A+             D  +P    + 
Sbjct: 487 FLKAIYGLLGFTF-KLNLSTRPEKYLGKLETWDMAEEKLRSALDEFAATDGGVPWVLNEG 545

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D                A      +  + D L    + +   ++      FG +Y+    
Sbjct: 546 DG---------------AFYGPKIDITICDVLKREWQCATIQLDFQLPQNFGLEYNTGDV 590

Query: 300 ATFKGAD--------------------------------GKDHYVQMGSYGIGAMRVVAA 327
            T K  +                                G    V +     G++    A
Sbjct: 591 PTKKDEEAVKEPVVKPKKTTEPEDPNAPPKERVYKPLTPGCARPVMIHRAMAGSIERFTA 650

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++     GK   WP  ++P +I +I +        +  +++ +   K    +  D  G  
Sbjct: 651 ILIEHFAGK---WPFWLSPRQILVIPVGVG---YFEYAKEVQSIFHKQQMFIDVDLSGNT 704

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFS 443
           +  +     L  +    +VG   +   +V +++R     +D    +SL+E I   +    
Sbjct: 705 LQKKIRTGQLAQYNFIFVVGDTEMKGREVNVRNRDDTSSQDRGKPVSLQEAIEKLTALRD 764

Query: 444 NNR 446
             R
Sbjct: 765 ERR 767


>gi|297155818|gb|ADI05530.1| threonyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 659

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 147/446 (32%), Gaps = 41/446 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L +   RD      +L L +    +   G+  + P G      + A  R+    
Sbjct: 247 KAYLDFLVEAEKRDHRKLGSELDLFS-FPDELGSGLAVFHPKGGIIRREMEAYSRKRHEE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G   ++ P +  A L+  SG    Y + M    +   +       +  +   IFR+  +
Sbjct: 306 SGYEFVNTPHITKAKLFETSGHLPHYMEGMFPPMEFEGQDYYLKAMNCPMHNLIFRARGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R+R F   D++ +  T E +    + +    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRTRGFTQDDSHIY-CTREQAPDELDSLLTFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +     D S +FI                 +    + +      
Sbjct: 425 DLLRDYGLNDFYLELSTR----DDSDKFI--------------GSDEQWAEATDMLRQAA 466

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +       A      + +  D++    ++S   ++                  +
Sbjct: 467 EKQGLELVMDPGGAAYYGPKISVQAKDAIGRTWQMSTIQVDFNQPAR--------FELEY 518

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG +   + +     G++    AV+   + G   +W   +AP +   I I       
Sbjct: 519 TAADGSRQQPIMLHRALFGSIERFFAVLLEHYAGAFPVW---LAPVQAVGIPIG---DSH 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+  A     G  V  D   +++  +   A     P  +I G   ++   V  ++R
Sbjct: 573 VPYLEEFAAEAKAKGLRVEVDSSSDRMQKKIRNAQRAKIPFMIIAGDDDMAAGAVSFRYR 632

Query: 422 LTGIREDMS----LEEVINYASHRFS 443
               +  +     + E+++    R  
Sbjct: 633 DGSQKNGIPRYEAIAEILDAVQRRIQ 658


>gi|238852615|ref|ZP_04643025.1| proline--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|238834761|gb|EEQ26988.1| proline--tRNA ligase [Lactobacillus gasseri 202-4]
          Length = 565

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 2/229 (0%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD  +  V        + +     + D      ++   +     A     NE   D +  
Sbjct: 338 ADWADKIVADETVKGLYNVVVGANETDYQYQNANLDRDFKVDEFADIRTANEGELDPVDH 397

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A IE   
Sbjct: 398 LPLKFTTSIEVGHIFKLGTYYTKTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAIEQHL 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
              GI WP  +APF + LI +K  D+   +  EK+   LS    DV +DD  E+ G +F 
Sbjct: 458 TENGIAWPKEIAPFDVHLIQMKMKDEDQTELAEKLEKELSTK-YDVLYDDRNERPGVKFN 516

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ADL+G PL++ +G K   D  VE+K       +++ + ++    +   
Sbjct: 517 DADLVGAPLRITIGRK-AKDGIVEVKRPTDEKAKEVDISDLDAMITKEL 564


>gi|302541133|ref|ZP_07293475.1| threonine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458751|gb|EFL21844.1| threonine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 659

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 144/444 (32%), Gaps = 37/444 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L +   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 247 KAYLEFLAEAEKRDHRKLGAELDLFS-FPDELGSGLAVFHPRGGVIRKEMEDYSRKRHEE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G   ++ P +  A L+  SG    Y   M    +   +       +  +   IFR+  +
Sbjct: 306 SGYEFVNSPHITKAKLFETSGHLPHYMDGMFPPMEFEGQDYYLKAMNCPMHNLIFRARGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R+R F   D++ +  T E      + +    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIY-CTKEQMADELDNLLTFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +     D S +F+   +  E               +        
Sbjct: 425 DLLRDYGLNDFYLELSTR----DDSDKFMGEPEQWE--------------EATEELRKAA 466

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +       A      + +  D++    ++S   ++               +  +
Sbjct: 467 EKQGLELVMDPGGAAFYGPKISVQAKDAIGRTWQMSTIQVDFNQPAR--------FNLEY 518

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG +   V +     G++    AV+   + G    W   +AP +   I I       
Sbjct: 519 TAADGSRQQPVMLHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIGDG---H 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+  A+    G  V  D   +++  +   A     P  VI G + V+   V  ++R
Sbjct: 573 VPYLEEFAAQARAKGLRVEVDSSSDRMQKKIRNAQRSKVPFMVIAGDEDVAAGAVSFRYR 632

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               +  + ++E I          
Sbjct: 633 DGSQKNGIPIDEAIAEIIDVVERR 656


>gi|311064741|ref|YP_003971466.1| prolyl-tRNA synthetase ProS [Bifidobacterium bifidum PRL2010]
 gi|310867060|gb|ADP36429.1| ProS Prolyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 616

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 144/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE
Sbjct: 16  LRMSTMFLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + + 
Sbjct: 76  IDGIGAQEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKD 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +
Sbjct: 136 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 196 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMAIGEDTFALAPSGKAWNVEA 249



 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           ++ I  +        ++     +      A    H +   D          RG+E+G +F
Sbjct: 399 EWIIGGDEAGKHRFHAVYGRDFKADGTVEAVEVRHGDMSPDGSGP--LSFERGVEIGQVF 456

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G KYS  +       +GK   V MG YGIG  RV+A + E+ HD +G+ WP  +AP +
Sbjct: 457 QLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAETHHDERGLAWPAVIAPAQ 516

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
           + ++     D    DA EK+ A L + G +V +DD  +   G +F  A+L+G PL  + G
Sbjct: 517 VHVVA-TGKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGVKFKDAELIGVPLIAVAG 575

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              V++  +EI++R +     + + +     + R 
Sbjct: 576 RDTVNNGTIEIRNRDSSDSVAVPVADAAQTLASRL 610


>gi|170016989|ref|YP_001727908.1| prolyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|226701307|sp|B1MY62|SYP_LEUCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169803846|gb|ACA82464.1| Prolyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 571

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/243 (41%), Positives = 143/243 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   S G +S+LP+ ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVSAGTFSYLPMAKRVLNKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM VP +  A+LW +SGRY +YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDRIDANEMLVPEILPAELWQKSGRYTTYGPNLYKFKNRQDRDFILGPTHEETFTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF     G   ++  M  +
Sbjct: 121 DIKSYKKLPLVVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDTAFRNMESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R+GL    +  ++G +GG  S EF   A  GE  +  S             DF 
Sbjct: 181 YTNVFDRIGLNYRAIVGDAGAMGGSDSKEFSAPAAAGEDIIAYSDTTDYAANLEMAKDFY 240

Query: 241 DII 243
           +  
Sbjct: 241 ERQ 243



 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 3/211 (1%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +              +   + +I     +           +    +   D       V 
Sbjct: 347 DERAADLVNFAAGANEDGKHYLNINWQRDVQLTEENIGDFRTAREGDVAVDGHGH--LVF 404

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+++A++E   D  G+
Sbjct: 405 TKGIEIGHIFKLGTRYSKAMGAQVLDENGRQVDMIMGSYGIGVSRLLSAIVEQKADDDGL 464

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +WP SVAPF + ++ +   D        ++   L+K G +V  DD  E+ G +FA ADL+
Sbjct: 465 VWPASVAPFDVHIVPVNTKDDEQAGVASQLEELLTKQGLEVLIDDRKERAGVKFADADLI 524

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G P+++ VG K  S+  VE+K R +    +M
Sbjct: 525 GLPIRITVGKK-ASEDVVEVKVRASNTNIEM 554


>gi|126642843|ref|YP_001085827.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 546

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/199 (57%), Positives = 148/199 (74%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP+G + L  V+AI+REE NR+GA+E+ +P  Q A LW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREEMNRSGAMEVFMPVTQPASLWEESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y+ YG E+LR  DR+D   + GPTHEEV+TD+ R+ +KSY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  YEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARNELKSYKQLPVNFYQIQTKFRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +Y RIF RLGL   P++A++G IGG 
Sbjct: 121 RFGVMRSREFIMKDAYSFHATQESLQETYDVMYDTYSRIFTRLGLDFRPVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            SHEF VLA +GE  +  S
Sbjct: 181 ASHEFHVLAASGEDDIAFS 199



 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G 
Sbjct: 351 VNWERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGE 410

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDA 364
           DGK   V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + AH      +A
Sbjct: 411 DGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEA 470

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R   
Sbjct: 471 AEALYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDA 530

Query: 425 IREDMSLEEVINYAS 439
              +++ EE++   +
Sbjct: 531 EASNLTKEELLAKLA 545


>gi|327398599|ref|YP_004339468.1| Prolyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181228|gb|AEA33409.1| Prolyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 578

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/230 (50%), Positives = 157/230 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E+ ++A I SH L+LR G I + + GIY++LPLG + +  V+ I+REE
Sbjct: 1   MRYSESFIYTLKEDQKEAAIVSHNLLLRGGFILKLASGIYNYLPLGLRVIRKVSDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +  +Q A+LW ESGR++ YGKE+LR+ DR D+  ++GPTHEEV+TDI R 
Sbjct: 61  MNKAGAQEILMAAIQPAELWKESGRWNDYGKELLRIKDRGDRDFVFGPTHEEVVTDIVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDELRPRFG+MR REF+MKDAYSFD    G   SY KM ++
Sbjct: 121 FVKSYKQMPLNLYQIQTKFRDELRPRFGLMRGREFIMKDAYSFDKDEAGMDVSYEKMNIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  IF R GL    + A++G IGG  S EF+VL+ TGE ++         
Sbjct: 181 YHNIFRRCGLAFRSVEADTGSIGGKDSEEFMVLSQTGEDEIVICDSCEYA 230



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 100/190 (52%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           +    A    V   +L     +      RGIEVGHIF  G KYS  M+ATF   +G+   
Sbjct: 375 FECDTADLRVVKEGELCPRCKKGTLKKIRGIEVGHIFKLGQKYSKAMNATFLDENGRSVP 434

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG YGIG  R   A IE +HD  GIIWP S+APF+I ++++   ++   + C+ +Y +
Sbjct: 435 YYMGCYGIGIGRTAQAAIEQNHDEYGIIWPISIAPFEIEIVSLDTRNKELVEFCDILYEQ 494

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + K G DV +DD  E+ G +    DL+G P++VIVG K     +VE+  R    ++ +  
Sbjct: 495 MKKEGFDVLYDDRDERAGIKLNDMDLIGIPIRVIVGKKAFEKGEVEVSLRRDRQKQSVEK 554

Query: 432 EEVINYASHR 441
           +EV+      
Sbjct: 555 DEVLEKVKEL 564


>gi|307326749|ref|ZP_07605941.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887512|gb|EFN18506.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 659

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 148/444 (33%), Gaps = 37/444 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L +   RD      +L L +    +   G+  + P G      +    R+  + 
Sbjct: 247 KAYLDFLAEAEKRDHRKLGAELDLFS-FPDELGSGLAVFHPKGGVIRKEMEEYSRKRHDE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G   ++ P +  A L+  SG    Y   M    +   +       +  +   IFR+  +
Sbjct: 306 SGYEFVNTPHITKARLFETSGHLPHYMDGMFPPMEFEGQDYYLKAMNCPMHNLIFRARGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R+R F   D++ +  T E      + +    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIY-CTKEQMADELDNLLTFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +     D S +FI   +  E               +        
Sbjct: 425 DLLRDYGLNDFYLELSTR----DDSDKFIGGPEQWE--------------EATEELRKAA 466

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +       A      + +  D++    ++S   ++                  +
Sbjct: 467 EKQGLELVMDPGGAAFYGPKISVQARDAIGRTWQMSTIQVDFNQPER--------FELEY 518

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG +   V +     G++    AV+   + G    W   +AP +   I I       
Sbjct: 519 TAADGSRQQPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIGDG---H 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+  A+    G  +  D   +++  +   A     P  VIVG + V+++ V  ++R
Sbjct: 573 VPYLEEFAAQAKAKGLRMEVDSSSDRMQKKIRNAQKSKIPFMVIVGDEDVTNNAVSFRYR 632

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               +  + ++E +   +      
Sbjct: 633 DGSQKNGIPIDEALAEIADAVERR 656


>gi|306785673|ref|ZP_07423995.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu003]
 gi|308329673|gb|EFP18524.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu003]
          Length = 582

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 136/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  + +GE      
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRC 226



 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  G
Sbjct: 417 MARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+L
Sbjct: 477 LRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASAGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 536 LGMPWIVVVG-RGWADGVVELRDRFSGQTREL 566


>gi|260187861|ref|ZP_05765335.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|289448507|ref|ZP_06438251.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CPHL_A]
 gi|289421465|gb|EFD18666.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CPHL_A]
          Length = 582

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 136/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  + +GE      
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRC 226



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  G
Sbjct: 417 MARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+L
Sbjct: 477 LRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 536 LGMPWIVVVG-RGWADGVVELRDRFSGQTREL 566


>gi|320011858|gb|ADW06708.1| threonyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 658

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 147/446 (32%), Gaps = 41/446 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD     ++L L +    +   G+  + P G      +    R     
Sbjct: 246 KAHLEFLEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHI 122
            G   +  P      L+ +SG  D Y   M      +D       P +  +   IF +  
Sbjct: 305 EGYEFVYSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARG 364

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ RSR F   DA+ +  T E      ++     
Sbjct: 365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDRTLTFV 423

Query: 182 LRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           L +    GL    +   +  P     S E    A     QV   +     P P       
Sbjct: 424 LNLLRDYGLTDFYLELSTKDPEKFVGSDEIWEEATETLRQVAEKQGLPLVPDPG------ 477

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +  D++    ++S   ++    F    ++      
Sbjct: 478 --------------GAAFYGPKISVQCKDAIGRTWQMSTVQLD----FNLPERF----DL 515

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG K   V +     G++    AV+   + G   +W   +AP +   I I     
Sbjct: 516 EYTGPDGTKQRPVMIHRALFGSIERFFAVLLEHYAGAFPVW---LAPVQAVGIPIG---D 569

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++  A+  K G  V  D   +++  +         P  +I G + +++  V  +
Sbjct: 570 THIPYLQEFAAKARKQGLRVDVDASSDRMQKKIRNQQKQKVPFMIIAGDEDMANGAVSFR 629

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           +R       + ++E I   +    + 
Sbjct: 630 YRDGSQENGIPVDEAIAKIAKAVEDR 655


>gi|296139421|ref|YP_003646664.1| prolyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027555|gb|ADG78325.1| prolyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 585

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L NV  ++REE 
Sbjct: 4   RFSQLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLRNVEHVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPREPYETTNRWTEYGDSLFRLQDRKGADMMLGPTHEEIFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD + EG   +Y K   +Y
Sbjct: 124 YNSYKDLPVILYQIQNKYRDEERPRAGILRGREFVMKDSYSFDTSDEGLSEAYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+ ++  GE     S
Sbjct: 184 QRIFARLAIEHVIVSATSGAMGGSASEEFLAVSPVGEDTYVHS 226



 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                  VSARGIE+GHIF  G KY+        G +GK   +  GSYGIG  R+VA + 
Sbjct: 414 PDGRGTLVSARGIEIGHIFQLGRKYTDAFEVDVLGENGKPVRLTQGSYGIGVSRLVAVIA 473

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD KG+ WP  VAPF + ++ I   D+      E + A L   G  V  DD     G
Sbjct: 474 EQQHDDKGLRWPKGVAPFDVHVV-IANKDEGAWTGAESLAAELDAAGLQVLLDDRKASPG 532

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +F  ++LLG P  V+VG +  +D  VE++ RLTG   ++ +
Sbjct: 533 IKFKDSELLGVPTVVVVG-RGWADGVVELRDRLTGESREIPV 573


>gi|15609982|ref|NP_217361.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|148662686|ref|YP_001284209.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148824035|ref|YP_001288789.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|161350062|ref|NP_337423.2| prolyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|167967198|ref|ZP_02549475.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404817|ref|ZP_03416998.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215412677|ref|ZP_03421395.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428284|ref|ZP_03426203.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431786|ref|ZP_03429705.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|218754593|ref|ZP_03533389.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558862|ref|ZP_03537938.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|253798069|ref|YP_003031070.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 1435]
 gi|254232940|ref|ZP_04926267.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis C]
 gi|254365491|ref|ZP_04981536.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551909|ref|ZP_05142356.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260201976|ref|ZP_05769467.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|260206156|ref|ZP_05773647.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289444396|ref|ZP_06434140.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289553367|ref|ZP_06442577.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 605]
 gi|289571033|ref|ZP_06451260.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T17]
 gi|289575546|ref|ZP_06455773.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis K85]
 gi|289746643|ref|ZP_06506021.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289751506|ref|ZP_06510884.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T92]
 gi|289754953|ref|ZP_06514331.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289763021|ref|ZP_06522399.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis GM 1503]
 gi|297635458|ref|ZP_06953238.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732457|ref|ZP_06961575.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298526313|ref|ZP_07013722.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|306777129|ref|ZP_07415466.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu001]
 gi|306781035|ref|ZP_07419372.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu002]
 gi|306789713|ref|ZP_07428035.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu004]
 gi|306794347|ref|ZP_07432649.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu005]
 gi|306798770|ref|ZP_07437072.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu006]
 gi|306804616|ref|ZP_07441284.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu008]
 gi|306807350|ref|ZP_07444018.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu007]
 gi|306968909|ref|ZP_07481570.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu009]
 gi|306973245|ref|ZP_07485906.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu010]
 gi|307080954|ref|ZP_07490124.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu011]
 gi|307085549|ref|ZP_07494662.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu012]
 gi|313659789|ref|ZP_07816669.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|2501040|sp|O05814|SYP_MYCTU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2078014|emb|CAB08445.1| PROBABLE PROLYL-TRNA SYNTHETASE PROS (PROLINE--TRNA LIGASE) (PRORS)
           (GLOBAL RNA SYNTHESIS FACTOR) (PROLINE TRANSLASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|124601999|gb|EAY61009.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis C]
 gi|134151004|gb|EBA43049.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506838|gb|ABQ74647.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722562|gb|ABR07187.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis F11]
 gi|253319572|gb|ACT24175.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 1435]
 gi|289417315|gb|EFD14555.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289437999|gb|EFD20492.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 605]
 gi|289539977|gb|EFD44555.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis K85]
 gi|289544787|gb|EFD48435.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T17]
 gi|289687171|gb|EFD54659.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289692093|gb|EFD59522.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T92]
 gi|289695540|gb|EFD62969.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289710527|gb|EFD74543.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis GM 1503]
 gi|298496107|gb|EFI31401.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214498|gb|EFO73897.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu001]
 gi|308326143|gb|EFP14994.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu002]
 gi|308333812|gb|EFP22663.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu004]
 gi|308337323|gb|EFP26174.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu005]
 gi|308340981|gb|EFP29832.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu006]
 gi|308346273|gb|EFP35124.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu007]
 gi|308348796|gb|EFP37647.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu008]
 gi|308353522|gb|EFP42373.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu009]
 gi|308357363|gb|EFP46214.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu010]
 gi|308361316|gb|EFP50167.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu011]
 gi|308364916|gb|EFP53767.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu012]
 gi|323718544|gb|EGB27714.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CDC1551A]
 gi|326904458|gb|EGE51391.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis W-148]
 gi|328457842|gb|AEB03265.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 4207]
          Length = 582

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 136/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  + +GE      
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRC 226



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  G
Sbjct: 417 MARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+L
Sbjct: 477 LRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 536 LGMPWIVVVG-RGWADGVVELRDRFSGQTREL 566


>gi|153004735|ref|YP_001379060.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152028308|gb|ABS26076.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 681

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 155/446 (34%), Gaps = 46/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD       L L     H+ + G   WLP G    + +   +R   ++ G 
Sbjct: 266 LARMEEVRKRDHRKLGPALGLFA--FHEVAPGAAFWLPNGTTLYNVLEDAMRRLVSKGGY 323

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---------MIYGPTHEEVMTDI 117
            E+  P L +  LW +SG +  Y + M  + D+             M   P +      I
Sbjct: 324 QEVKTPLLFNKRLWEQSGHWGVYRENMFLVFDKESDPALPVDERLSMSLKPMNCPSHHLI 383

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++   +SYR+LP  ++ +    R+EL     G+ R R+F   DA+ + +         ++
Sbjct: 384 YKMGKRSYRDLPIRYFTVDTLHRNELSGSLGGLTRVRQFAQDDAHLYLM-ESQIPEEVSR 442

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +      ++   GL+   +   + P+  +       L D  E  +  + D +  P     
Sbjct: 443 IVELMKTVYGAFGLEF-SLLFSTRPVKPEDRIGDDALWDKAEGALRAALDRIGLPWQLNP 501

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            D                  A      +  + DSL    +     ++             
Sbjct: 502 GDG-----------------AFYGPKIDFVVTDSLGRKWQTCTIQLDYAAPER------- 537

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G D  +H  V +     G+     A++   + G    W   +AP +  ++ + 
Sbjct: 538 -FDLTYVGDDNHEHRPVVIHRAVYGSFERFIAILTEHYAGAFPAW---LAPVQARVVTVS 593

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +       ++ A+L+  G  V  D+  +++G++   A L   P  +++G K V    
Sbjct: 594 DRFEGW---AREVQAKLATAGWRVELDESSDKLGAKIRNAQLAKIPFALVIGEKEVEAQG 650

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V  +       + M L+         
Sbjct: 651 VAPRRHGGEDLKTMPLDAFEALLRRE 676


>gi|116629465|ref|YP_814637.1| prolyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|282850819|ref|ZP_06260193.1| proline--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311110887|ref|ZP_07712284.1| proline--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273597|sp|Q044C3|SYP_LACGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116095047|gb|ABJ60199.1| Prolyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|282557771|gb|EFB63359.1| proline--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311066041|gb|EFQ46381.1| proline--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 565

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 2/229 (0%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD  +  V        + +     + D      ++   +     A     NE   D +  
Sbjct: 338 ADWADKIVADETVKGLYNVVVGANETDYQYQNANLDRDFKVDEFADIRTANEGELDPVDH 397

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E   
Sbjct: 398 LPLKFTTSIEVGHIFKLGTYYTKTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHL 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
              GI WP  +APF + LI +K  D+   +  EK+   LS    DV +DD  E+ G +F 
Sbjct: 458 TENGIAWPKEIAPFDVHLIQMKMKDEAQTELAEKLEKELSTK-YDVLYDDRNERPGVKFN 516

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ADL+G PL++ +G K   D  VE+K        ++++ ++    +   
Sbjct: 517 DADLVGAPLRITIGRK-AKDGIVEVKRPTDEKAMEVNISDLDAMITKEL 564


>gi|256391426|ref|YP_003112990.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256357652|gb|ACU71149.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 666

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 145/441 (32%), Gaps = 43/441 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   ++ 
Sbjct: 261 EAEKRDHRKIGAELDLFS-FPDELGSGLPVFHPKGGTIRRVMEDYSRKRHEEAGYEFVNT 319

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRN 127
           P +   +L+  SG  D Y   M      ++    +     P +  +   I+R+  KSYR+
Sbjct: 320 PHITKGNLYEISGHLDWYKDGMFPPMVLDEGHGKQEYYLKPMNCPMHNLIYRARGKSYRD 379

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP   ++    +R E      G+ R R     DA+ +  T E  +     +    L +  
Sbjct: 380 LPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHIY-CTREQMRDELVSLLRFVLDLLR 438

Query: 187 RLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             GL    +   +  P     + E   LA     +V   +                    
Sbjct: 439 DYGLNDFYLELSTKDPEKYVGTDEEWELATDTLREVAEGE-------------------- 478

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  +       A      + +  D++    ++S   ++    F    ++       ++ A
Sbjct: 479 DLELVMDPGGAAFYGPKISVQARDAIGRTWQMSTIQLD----FQLPQRF----DLEYQAA 530

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG +   + +     G++     V+   + G    W   +AP ++  I I          
Sbjct: 531 DGSRQRPIMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIPIT---DAHVPY 584

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E + ++L   G  V  D   +++  +   A     P  ++ G   V+ + V  ++R   
Sbjct: 585 LELVASKLRAEGVRVEIDSSDDRMQKKIRNAQKQKVPYMLLAGDDDVAKAAVSFRYRSGE 644

Query: 425 IREDMSLEEVINYASHRFSNN 445
               + ++E +          
Sbjct: 645 QNNGVPVDEAVAEIVKAVRER 665


>gi|225619417|ref|YP_002720643.1| prolyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|254782887|sp|C0QY98|SYP_BRAHW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225214236|gb|ACN82970.1| prolyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 578

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/229 (48%), Positives = 154/229 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P L+E P DA IAS+KLMLR  +  + S G+YS+LPLG + L+ ++ IIREE
Sbjct: 1   MRLSKLFMPTLKEAPSDAIIASNKLMLRAALARKISNGLYSYLPLGVRVLNKISNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++
Sbjct: 61  MDAIGSNECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++ P T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +
Sbjct: 121 EIQSYKDFPLTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y +IF R+GL ++ ++A+SG +GG+ S EF+VL++ GE  +        
Sbjct: 181 YTKIFKRMGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSKCDY 229



 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 2/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D   + ++  +         D    K  D  P+        +G+E+GHIF  G KY+   
Sbjct: 364 DDTHIKNVNIERDFNIDVWGDFRTAKEGDRCPQCGETLYQKKGLELGHIFKLGDKYTEAF 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +      + K+    MG YGIG  R +A+VIE ++D KGII+P SVAP++  ++ I    
Sbjct: 424 NFKVLDENNKEITPIMGCYGIGVNRALASVIEQNYDDKGIIFPISVAPYEAIVVAIDKET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      E+IY  L+ +G +  +DD  E++G +    DL+G P+++IVG K +    VE 
Sbjct: 484 EDSFKKAEEIYNTLNSIGVETMFDDRKERLGVKLNDCDLIGIPIRIIVGKKSLQKGVVEF 543

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           K R +    ++ +E++I Y   +
Sbjct: 544 KLRKSQESVEVKVEDIIEYVKTK 566


>gi|227890230|ref|ZP_04008035.1| prolyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227849232|gb|EEJ59318.1| prolyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 565

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 142/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  +++     
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNENGTYAA 231



 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 2/229 (0%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD  +  +        + +     + D      ++   +     A     NE   D +  
Sbjct: 338 ADWADQIIADETVKDLYNVVVGANETDYQYQNANLDRDFKVDEFADIRTANEGEPDPVDH 397

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E   
Sbjct: 398 LPLKFTTSIEVGHIFKLGTYYTDTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHL 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
              GI WP  +APF I LI +K  D+   +  EK+   LS    DV +DD  E+ G +F 
Sbjct: 458 TENGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEKELS-AKYDVLYDDRNERPGVKFN 516

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ADL+G PL++ +G K   D  VE+K  +     ++++ ++    +   
Sbjct: 517 DADLVGAPLRITIGRK-AKDGIVEVKRPMDEKATEVNISDLDAVITKEL 564


>gi|317495744|ref|ZP_07954109.1| prolyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914197|gb|EFV35678.1| prolyl-tRNA synthetase [Gemella moribillum M424]
          Length = 566

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/231 (42%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  K + N+  +IREE
Sbjct: 1   MRQSRTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATKVIQNIERVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P LQS D W ESGR+   G E++RL DR        PT EE++     +
Sbjct: 61  HDKIGAVELLMPLLQSEDYWKESGRWYKMGDELMRLKDRKGAGYALSPTAEEIICQTVNN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  +PE  + +Y   + +
Sbjct: 121 MLTSYKQLPMNLYQIQTKFRDEMRPRLGLLRGKEFIMKDGYSFHDSPESLRETYLDYYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE  +  +++     
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEIGEDTIAYTEESDYAA 231



 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 77/212 (36%), Positives = 114/212 (53%), Gaps = 3/212 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           +M       N      I++N    +  A Y        +   D   + K    +GIEVG 
Sbjct: 353 YMYNHSCGANKKGYHYINVNPGDYEVDAYYDLRMIEEGDIAEDLSGKIKFA--KGIEVGQ 410

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           +F  G  YS  M+ T+  A+G+ ++  MG YGIG  RV++A+IE  +D KGIIWP  VAP
Sbjct: 411 VFELGKGYSEAMNITYLDANGRANHFYMGCYGIGVSRVISAIIEQHNDEKGIIWPKEVAP 470

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           F++ L+ +    Q   +  EK+YA L+  G  V +DD  E+ G +F  ADL+G PLQV+V
Sbjct: 471 FQVHLVCVDVKKQEQLELSEKLYAELTSAGYTVLYDDRAERAGVKFNDADLIGIPLQVVV 530

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G K  ++  VE+K R T  + D S+ EV++  
Sbjct: 531 GKK-ATEGIVEVKERKTLEKVDTSITEVLSKV 561


>gi|209879794|ref|XP_002141337.1| threonyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
 gi|209556943|gb|EEA06988.1| threonyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
          Length = 743

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/445 (20%), Positives = 154/445 (34%), Gaps = 42/445 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  L+E   RD  +    L L        S G   WLP G +  + +   IR E    G
Sbjct: 319 YIEFLEEVKKRDHRVIGSNLNLF-FFDTNASVGSCFWLPPGARIYNKMIEFIRSEYRIRG 377

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S DLW  SG Y +Y + M  L +   K     P +      IFR    SY
Sbjct: 378 FEEVVTPNIFSCDLWKTSGHYFAYKENMF-LFEVEKKEWGLKPMNCPGHCIIFRHMNPSY 436

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP       +  R+EL     G+ R R F   DA+ F  T E  +            +
Sbjct: 437 KQLPIRMADFGVLHRNELSGALNGLTRVRRFQQDDAHIF-CTAEQIQSEVFAALEFLFFV 495

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +LG     +   + P     + E    A+           +       +         
Sbjct: 496 YDKLGFSF-NLYLGTMPKEHLGTREKWEDAENSLKLALNRTGYQWKVNEGDG-------- 546

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  L+D+L    +     ++      F  +Y    +   +G
Sbjct: 547 ------------AFYGPKIDIMLWDALKRPHQCGTIQLDFQLPIRFNLQYRSDDNILTEG 594

Query: 305 AD---------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            D         G    V +    +G++  + AVI  +  GK   W   ++P +  ++ I 
Sbjct: 595 GDHNLDEELKPGYKRPVIIHRAILGSIERMVAVILENTGGKLPFW---LSPRQAIVLPI- 650

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   D  + I + L  +G DV  D     I  +   A LL +   +IVG        
Sbjct: 651 --SEKSHDYAKSIESELCCMGYDVGADYSSSTINRKIREAQLLQWNFMLIVGENEAKSGS 708

Query: 416 VEIKHRLTGIRE-DMSLEEVINYAS 439
           + ++ R +   + +M L ++I    
Sbjct: 709 ITVRSRDSSTSQRNMILSDLIAEFK 733


>gi|25028444|ref|NP_738498.1| prolyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|259507503|ref|ZP_05750403.1| proline--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|81846817|sp|Q8FP97|SYP_COREF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23493729|dbj|BAC18698.1| putative prolyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|259164888|gb|EEW49442.1| proline--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 588

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG +AL N+  ++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGVYSWLPLGLRALRNIEQVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPGLLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFASTVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEESYARHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG++ +  +A SG +GG  S EF+ ++  GE     +
Sbjct: 184 QRIFDRLGIEYVICKATSGAMGGSASEEFLAVSANGEDTFVRA 226



 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 4/168 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A + E  HD  G+ 
Sbjct: 423 RGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGVSRLLAVLAEQRHDEAGLN 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           W  +VAP+++ ++     D    +A E+    LS+ G DV +DD  +   G +F  A+LL
Sbjct: 483 WSPAVAPYQVHVVAAN-KDAAAIEAAERYATELSQAGIDVLFDDRPKVSPGVKFKDAELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G P  +I+G +  +D  VE++ R  G + ++ ++E +       +  R
Sbjct: 542 GMPFALILG-RGYADGTVELRVRG-GEKTELPVDEAVETIVRLVNEAR 587


>gi|148543925|ref|YP_001271295.1| prolyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184153321|ref|YP_001841662.1| prolyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364834|ref|ZP_03848881.1| prolyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325682540|ref|ZP_08162057.1| proline--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|166980132|sp|A5VJD4|SYP_LACRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701303|sp|B2G6V0|SYP_LACRJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148530959|gb|ABQ82958.1| prolyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183224665|dbj|BAG25182.1| prolyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070097|gb|EEI08473.1| prolyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324978379|gb|EGC15329.1| proline--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 577

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/244 (44%), Positives = 148/244 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEAPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +       I    + F 
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDGDYAANIEKAESKFT 240

Query: 241 DIIS 244
            +  
Sbjct: 241 GVQQ 244



 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 137/305 (44%), Gaps = 22/305 (7%)

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            I     DE +P   +MR  + + +      L  E  + +  +    YL           
Sbjct: 282 YIAKMSEDEYQPVLVLMRGDDEVNEAKVINALDCEELELATEEDAEKYLN---------- 331

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                 GP+G  +  E  +LAD         K  ++    +    +  + +      +  
Sbjct: 332 AHPGSLGPVG--VGEEVKILADN------YVKVLVNMACGANEDGYHYVNANIDRDFRVD 383

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                 +    E   D  P        GIE+GHIF  GT YS  + A    ++G+   V 
Sbjct: 384 QFGDFRNVKEGEIAPDGQPLKFTP---GIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVI 440

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R+++AV E + D  G++WPDS+APF + +I + A  +      +KI  +L+
Sbjct: 441 MGSYGIGVTRLLSAVAEQNADENGLVWPDSIAPFDVHVIPVNAKKEDQMAMADKIDQQLT 500

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA +DL+G P++V VG K   D  VEIK R TG   ++  EE
Sbjct: 501 EAGYEVLVDDRKERAGVKFADSDLIGIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEE 559

Query: 434 VINYA 438
           ++N  
Sbjct: 560 LVNTV 564


>gi|297243824|ref|ZP_06927754.1| prolyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296888245|gb|EFH26987.1| prolyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 604

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 143/232 (61%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIREE N
Sbjct: 1   MSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEEV T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHEADYLLAPTHEEVFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+M+D YSF +  +G K +Y +   +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDGYSFSIDEDGLKSAYVEERAAYA 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF+RLG+K + + A SGP+GG  S EF+     GE     +     + + +
Sbjct: 181 RIFNRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGEDTFALAPSGKAWNVEA 232



 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 436 RGVEIGQVFQLGLKYSKALGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLA 495

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     DQV  DA EK+   LSK G +V +DD  +   G +F  A+L+
Sbjct: 496 WPMAIAPAQVHVVA-TGKDQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELV 554

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  + G   V++  +EI+ R     E + ++E  +    R  
Sbjct: 555 GVPLIAVAGRDTVNNGTIEIRDRNGSNVEAVPVDEAASRIVKRVK 599


>gi|296454700|ref|YP_003661843.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184131|gb|ADH01013.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 604

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 143/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 6   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 186 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 239



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 438 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPSVIAPAAVHVVA-TGKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  +VG  +V+D  +EI+ R    +  +   E     + RF+
Sbjct: 557 GVPLIAVVGRDYVNDGTIEIRDRNGENKVAVPAAEAAGTLADRFA 601


>gi|148988673|ref|ZP_01820106.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147925874|gb|EDK76949.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 600

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 156/401 (38%), Gaps = 37/401 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +I +  R E      G+ R RE  + D + F +TPE  +  + +    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLF-VTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R                  D  +T  +   D M     +      
Sbjct: 406 IIDVYEDFNLTDYRFRLSLR--------------DPQDTHKYFDNDEMWENAQTMLRAAL 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + ++    +     A      + ++  +L + + +S   ++    F    ++      
Sbjct: 452 DEMGVD--YFEAEGEAAFYGPKLDIQIKTALGKEETLSTIQLD----FLLPERF----DL 501

Query: 301 TFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG+DH   M   G+ + M    A++  ++ G    W   +AP +++LI +   ++
Sbjct: 502 KYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTW---LAPHQVTLIPVS--NE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              D   ++  +L   G     D+  E++  +   +    F
Sbjct: 557 KHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTARF 597


>gi|298252610|ref|ZP_06976404.1| prolyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297532974|gb|EFH71858.1| prolyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 603

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 142/232 (61%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIR+E N
Sbjct: 1   MSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIRDEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR+    +  PTHEEV T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHQADYLLAPTHEEVFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+M+DAYSF +  +G K +Y +   +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDAYSFSIDEDGLKSAYVEERAAYA 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RLG+K + + A SGP+GG  S EF+     GE     +     + + +
Sbjct: 181 RIFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGEDTFALAPSGKAWNVEA 232



 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 2/166 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 436 RGVEIGQVFQLGLKYSKALGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLA 495

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     DQV  DA EK+   LSK G +V +DD  +   G +F  A+L+
Sbjct: 496 WPMAIAPAQVHVVA-TGKDQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELV 554

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL  + G   V++  +EI++R     E + ++E       R ++
Sbjct: 555 GVPLIAVAGRDTVNNGTIEIRNRDGSNVEAVPVDEAAARIVSRVND 600


>gi|163781697|ref|ZP_02176697.1| prolyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882917|gb|EDP76421.1| prolyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 570

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL  L+E+P +AE  SH+L+L+ G I Q S GIY  LP G + +  + +I+R+E
Sbjct: 1   MRWSRYFLYTLKEDPAEAEAPSHRLLLKAGFIKQVSAGIYEILPAGWRVIRKIESIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L  A+LW E+GR+D+YG E+ RL DR+ +    GPTHEE +TD+ R 
Sbjct: 61  MDRSGAQELLLTVLNPAELWKETGRWDTYGNELFRLKDRSGREYCLGPTHEEEITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 VVHSYRQLPVTLYQIQVKFRDEKRPRFGLIRGREFIMKDAYSFDADEFSATMSYENMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F +L L+ I  +A +G IGG  SHEFI   D GE +V   +      
Sbjct: 181 YDRVFKKLRLEVIMAQASTGQIGGKQSHEFIAFTDYGEAKVGYCESCGYAA 231



 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
               +        Y    DV      D  P+        RG+E+GHIF  GT+YS PM A
Sbjct: 365 YHYINANPGRDYQYGEFVDVAEVVEGDPCPQCGSPLKVKRGLELGHIFLLGTRYSEPMKA 424

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G +  + MG YGIG  R+++A++E  HD KGI WP  VAPF++ +I +   D  
Sbjct: 425 YFTDPEGNEKPIIMGCYGIGISRIMSAIVEQYHDDKGIKWPTPVAPFELEIICLNMSDSQ 484

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EK+Y    + G +V +DD  E  G +FA ADL+GFP +++VG K V + KVE++ 
Sbjct: 485 MTEVAEKLYLEAEEKGIEVIYDDREESAGFKFADADLVGFPYRIVVGRK-VKEGKVELQK 543

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG + D+ +EEVI+      + ++
Sbjct: 544 RATGEKLDVPVEEVIDRVKEMIAEDK 569


>gi|291398043|ref|XP_002715638.1| PREDICTED: threonyl-tRNA synthetase 2, mitochondrial [Oryctolagus
           cuniculus]
          Length = 718

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 158/462 (34%), Gaps = 59/462 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +     AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 286 LLRAWEAWREQAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 345

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAM--------------IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M   + +D +  A                  
Sbjct: 346 RGFSEVKTPTLFSTKLWEKSGHWEHYKEDMFALQPSDSDSSACSQSDHPTSQPPDTLALK 405

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F   
Sbjct: 406 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA- 464

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P+  +            ++  LG     +   + P G         L D  E  +  S +
Sbjct: 465 PDQLEAEIYGCLDFLRSVYAVLGFSF-HLALSTRPSGFLGE---PCLWDQAEQLLQQSLE 520

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +      A      +  L D+L    +     ++   
Sbjct: 521 AFGEP-----------------WDLSPGDGAFYGPKIDVHLRDALGRPHQCGTIQLD--- 560

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 561 -FQLPLRF----DLQYKGQAGNLERPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 612

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++++I +    +   +   ++   L   G     D D G  +  +   A L  +  Q 
Sbjct: 613 PFQVAVIPVGTEQE---EYAREVQQTLQAAGLASDLDADPGLTLSRRVRRAQLAHYNFQF 669

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +VG K  S+  V ++ R      +  L E          N R
Sbjct: 670 VVGRKEQSNRTVNVRTRDNQRLGERGLAEATRRLLE-LQNTR 710


>gi|42519365|ref|NP_965295.1| prolyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|81832202|sp|Q74IS2|SYP_LACJO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41583653|gb|AAS09261.1| prolyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 565

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/225 (46%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 2/229 (0%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD  +  +        + +     + D      ++   +     A     NE   D +  
Sbjct: 338 ADWADKIIADETVKDLYNVVVGANETDYQYQNANLDRDFKVDEFADIRTANEGEPDPVDH 397

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E   
Sbjct: 398 LPLKFTTSIEVGHIFKLGTYYTDTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHL 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
              GI WP  +APF I LI +K  D+      EK+   LS    DV +DD  E+ G +F 
Sbjct: 458 TENGIAWPKEIAPFAIHLIQMKMKDETQTKLAEKLEKELS-AKYDVLYDDRNERPGVKFN 516

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ADL+G PL++ +G K   D  VE+K  +     ++++ ++    +   
Sbjct: 517 DADLVGAPLRITIGRK-AKDGIVEVKRPMDEKATEVNISDLDAVITKEL 564


>gi|271967410|ref|YP_003341606.1| threonyl-tRNA synthetase [Streptosporangium roseum DSM 43021]
 gi|270510585|gb|ACZ88863.1| threonyl-tRNA synthetase [Streptosporangium roseum DSM 43021]
          Length = 659

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 146/443 (32%), Gaps = 39/443 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +    +   G+  + P G      +   +R  Q   G
Sbjct: 249 YLHMLEEAEKRDHRRLGAELDLFS-FPSELGSGLPVFHPKGGIIRKEMEDYMRRRQGEAG 307

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              ++ P +  + L+  SG    Y ++M    +         P +  +   IFR+  +SY
Sbjct: 308 YEFVNTPHITKSQLFETSGHLPWYAEDMFPPFELEGVEYRVKPMNCPMHNLIFRARGRSY 367

Query: 126 RNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +    +R E      G+ R R     D++ +  T E        +    L +
Sbjct: 368 RELPLRLCEFGSVYRYEKSGVVHGLTRVRGMTQDDSHIY-CTREQMVGEIKSLLTFVLSV 426

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFI-VLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
               GL    +   +     D S +FI   AD  E      +  ++  +     +  D  
Sbjct: 427 LRDFGLSEFYLELSTR----DDSDKFIGDPADWDEATDALRQTALESGL-----ELVDDP 477

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +      +  A                 K    R  ++  I              ++
Sbjct: 478 GGAAFYGPKISVQA-----------------KDAIGRTWQLSTI-QLDLNQPKRFELEYQ 519

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG     V +     G++     V+   + G     P  +AP ++  I I    +   
Sbjct: 520 AADGSRQTPVMIHRALFGSIERFLGVLTEHYAGAF---PPWLAPVQVVGIPIA---EAHA 573

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + +  R  + G  +  D   +++  +   A     P  ++ G + +++  V  + R 
Sbjct: 574 SYLQDVAKRARERGIRIEVDASDDRMQKKIRNAQKSKVPFMLLAGDEDIANGAVSFRFRN 633

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              +  + ++E IN         
Sbjct: 634 GEQKNGVPVDEAINEIVDAIERR 656


>gi|120403299|ref|YP_953128.1| prolyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|152112935|sp|A1T7H2|SYP_MYCVP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119956117|gb|ABM13122.1| prolyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 585

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 131/223 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIENIVRNEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR +   + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRNNDYLLGPTHEEMFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y     +Y
Sbjct: 124 YSSYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDIDDDGLKNAYIAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF  L ++ + + A SG +GG  S EF+  +D GE      
Sbjct: 184 QRIFDLLKVRYVIVSAVSGAMGGSASEEFLAESDVGEDTYVRC 226



 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  G KY+    A   G +GK   + MGSYGIG  R+VA + E  HD  G+ 
Sbjct: 422 RGIEIGHVFQLGRKYADAFGADVLGENGKPVRLTMGSYGIGVSRLVAVIAEQHHDELGLR 481

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +V+PF + ++ I   D   R    ++ A L ++G DV  DD     G +F  A+LLG
Sbjct: 482 WPSTVSPFDVHVV-IANKDADARTGATELAAELDRLGVDVLLDDRTASPGVKFKDAELLG 540

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  V+VG +  +D  VE++ R  G + ++ ++      S   +
Sbjct: 541 VPWIVVVG-RGWADGIVELRDRFGGDKHEIPVDGAAERISAALA 583


>gi|227497547|ref|ZP_03927775.1| proline--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226833001|gb|EEH65384.1| proline--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 614

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 138/232 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  F+  L+E+P DAE+ASHKL++R   I + + GIY+WLPLG   +  + AI+REE N
Sbjct: 5   LSTAFIRTLREDPADAEVASHKLLVRASYIRRTAPGIYTWLPLGLAVVRKIEAIVREEMN 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P L  A+ +  + R+D YG  +  L DR     +  PTHEE+ T + +   
Sbjct: 65  RMGGQEVHFPALLPAEPYKATQRWDEYGPTLFTLQDRKGGDYLLAPTHEEMFTLLAKDMF 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY +   +Y 
Sbjct: 125 SSYKDLPATLYQIQTKYRDEARPRAGLIRGREFIMKDSYSFDVDDAGLDASYQRHRDAYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RLGL+ +P+ A +G +GG  S EF+  +  GE     S         +
Sbjct: 185 RIFRRLGLEYVPVNAMAGAMGGSHSEEFLHPSPIGEDTFVRSDGGYAANAEA 236



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 2/167 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              RGIEVGHIF  G KY+  +  T    +GK   V MGSYGIG  RV
Sbjct: 424 EGDLAPDGSGPLHLERGIEVGHIFALGRKYAQALGFTVLDENGKARVVTMGSYGIGVSRV 483

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA+ E++HD +G+ WP  VAP+ + ++     D+        +   L   G +V +DD 
Sbjct: 484 MAALAEANHDERGLAWPIQVAPYHVQVLA-TGKDEQVFATAHALARELDAAGLEVLYDDR 542

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            +   G +FA ++LLG P  V+VG     +  VEI+ R +G R  + 
Sbjct: 543 RKVSAGVKFADSELLGVPFTVVVGRDLAKEGTVEIRDRRSGERRSVP 589


>gi|254444928|ref|ZP_05058404.1| threonyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198259236|gb|EDY83544.1| threonyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 610

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 154/477 (32%), Gaps = 72/477 (15%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    E   ++    H+ + +  G+ H      +G+  W P G      +   I E
Sbjct: 165 SKAELETYIEQIEESRKRDHRRVGKEMGLFHIDEAVGQGLILWKPKGAVIRQELQDFISE 224

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------------ 101
           +  +    ++  P +    L+  SG +  Y +         D                  
Sbjct: 225 QLLKQEYTQVFTPHIGKLGLYKTSGHFPYYQESQFPPLIERDSLADLADENATCSTLTNQ 284

Query: 102 ------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                 +  +  P +  +   I+ S   SYR+LP    +    +R E      G+ R R 
Sbjct: 285 LETGDIEGYLLKPMNCPMHIKIYDSEPHSYRDLPVRLAEFGTVYRWEQSGELNGMTRVRG 344

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F  T E  +            +F  LG++   +R        D         
Sbjct: 345 FTQDDAHIF-CTEEQLQGEIQGCLDLVKIVFGTLGMEDYSVRVSLRDPESDKYVGDPANW 403

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D  E  +  +   +D P   E  +                  A      +  + D     
Sbjct: 404 DKAEAAIREAVKTLDVPYVEEEGEA-----------------AFYGPKIDFVVKDV---- 442

Query: 275 KRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDHYVQM-GSYGIGAMRVVAAV 328
                    +G  +  GT    Y+LP      + G+D K H   M      G+M     +
Sbjct: 443 ---------IGREWQLGTVQVDYNLPVRFDINYTGSDNKPHRPVMVHRAPFGSMERFCGL 493

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     G    W   +AP ++ ++ I        D  + +  +L   G     D   +++
Sbjct: 494 LIEHFGGDFPTW---LAPEQVRILPI---SDKVADYAQSLLDQLKANGVRATADFNSDKL 547

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G++   A+L   P  +IVG +   ++KV ++ R    +  M  EE         +N 
Sbjct: 548 GAKIRNAELDKVPNTLIVGEREAEENKVSVRSRFHDGKPTMLFEEFETEVLQLINNR 604


>gi|305681315|ref|ZP_07404122.1| proline--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659520|gb|EFM49020.1| proline--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 666

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 136/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  ++REE 
Sbjct: 86  RLSSLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLRKIEKVVREEM 145

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L S + + ++ R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 146 DNIGAQELLFPALLSREPYEQTRRWTEYGDNLFRLKDRKGNDMLLGPTHEEMFARQVKDM 205

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY     +Y
Sbjct: 206 FTSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEQSYLAHRAAY 265

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             IF RL L+    +A SG +GG  S EF+ ++  GE     +
Sbjct: 266 QAIFDRLNLEYAICKATSGAMGGSASEEFLAISPNGEDTFVRA 308



 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 4/164 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+           GK     MGSYGIG  R+V  + E  HD  G+ 
Sbjct: 504 RGIEIGHIFQLGRKYTEVFDVQILDEHGKRTIPTMGSYGIGISRLVGVIAEQHHDDNGLN 563

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP+++ ++ +   D+    A + I A+L   G +V +DD  +   G +F  ++LL
Sbjct: 564 WPVEVAPYQVHVV-VANKDKAALAAGDDIVAQLDATGVEVLFDDRPKVSPGVKFKDSELL 622

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  V++G +  S+  VE++ R  G   ++   ++++  +   
Sbjct: 623 GMPYIVVLG-RSFSNGIVELRIRG-GETLEVPAADIVDTVTKLI 664


>gi|154148459|ref|YP_001406198.1| threonyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|171769701|sp|A7I107|SYT_CAMHC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|153804468|gb|ABS51475.1| threonyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 609

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 159/443 (35%), Gaps = 45/443 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL+E   RD  I  +++ L T    Q   G+  WLP G +    +  I+     R G
Sbjct: 204 YLRILEEAKKRDHRIIGNEMKLFT-FDDQIGAGLPVWLPNGARMRSKLEKILFGVHRRRG 262

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  AD W  SG Y +Y + M      +++     P +      +++S I+SY
Sbjct: 263 YEPVRGPEILKADAWKISGHYTNYKENMY-FTKIDEQEYGIKPMNCVGHIKVYQSEIRSY 321

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++  +  R E      G+ R REF   DA+ F + P   K +  ++     +I
Sbjct: 322 RDLPLKFFEYGVVHRHEKSGVMHGLFRVREFTQDDAHIFCM-PSQIKENVLEILDFVDKI 380

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P       +   +A     +      F           +   I 
Sbjct: 381 MKNFGFSY-EMEISTKPEKAIGDDKVWEIATNALKEALDENGFKYGIDEGGGAFYGPKID 439

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
           +                                  R  + G I      ++LP      +
Sbjct: 440 IKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFDLGY 469

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  +   V +    +G+      ++     G+    P  +AP  +S+I I       
Sbjct: 470 IDENNERKQPVMLHRAILGSFERFIGILIEHTAGE---LPFFIAPTGVSIIPIN---DAH 523

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +++   L+ +  D       E +  +   A+    P+ +++G   V +  V ++ R
Sbjct: 524 LNYAKEVQKALANLEVDSEILSKNETLNKRIRTAEKGRVPMILVLGDNEVKNRSVALRDR 583

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
               + ++SL+E + +  ++ + 
Sbjct: 584 RARAQSNLSLDEFLEFVKNKLNE 606


>gi|319441431|ref|ZP_07990587.1| prolyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 585

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/223 (44%), Positives = 139/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG + L N+ AI+R E 
Sbjct: 4   RMSSFFLRTLREDPADAEVPSHKLLVRAGYIRRVTPGVYSWLPLGLRVLHNIEAIVRREM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   + +  S R+  YG  +LRL DR     + GPTHEE+ TD+ +  
Sbjct: 64  NAIGAQEIRLPALLPREPYERSNRWTEYGDSLLRLKDRKGADYLLGPTHEEMFTDLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y    V+Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFIMKDSYSFTMDDAGLDEAYQAHRVAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF  LG++     A SG +GG  S EF+ ++ +GE     +
Sbjct: 184 QRIFDSLGVEYAICAATSGAMGGSASEEFLAVSASGEDTFVRA 226



 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RGIE+GHIF  G KY+          +GK     MGSYG+G  R++A + 
Sbjct: 412 PEGMGTLTLERGIEIGHIFQLGRKYTEAFDVKILDENGKRSVPTMGSYGLGVSRLIAVLA 471

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E  HD KG+ WP +VAPF + ++ I   D    +A   +   L   G +V +D+  +   
Sbjct: 472 EQMHDDKGLRWPTTVAPFDVHVV-IANKDAAAGEAAGSLAGELDAAGLEVIFDERPKVGP 530

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G +F  A+LLG PL VIVG +  ++  VE+++RLTG   +++  + +      
Sbjct: 531 GVKFKDAELLGMPLVVIVG-RGFAEGTVELRNRLTGETTNIAYGDAVATIREL 582


>gi|329667116|gb|AEB93064.1| prolyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 565

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/225 (46%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 2/229 (0%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD  +  +        + +     + D      ++   +     A     NE   D +  
Sbjct: 338 ADWADKIIADETVKDLYNVVVGANETDYQYQNANLDRDFKVDEFADIRTANEGEPDPVDH 397

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E   
Sbjct: 398 LPLKFTTSIEVGHIFKLGTYYTDTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHL 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
              GI WP  +APF I LI +K  D+   +  EK+   LS    DV +DD  E+ G +F 
Sbjct: 458 TENGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEKELS-AKYDVLYDDRNERPGVKFN 516

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ADL+G PL++ +G K   D  VE+K  +     ++++ ++    +   
Sbjct: 517 DADLVGAPLRITIGRK-AKDGIVEVKRPMDEKATEVNISDLDAVITKEL 564


>gi|21226809|ref|NP_632731.1| prolyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|74580278|sp|Q8PYZ1|SYP_METMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|20905107|gb|AAM30403.1| Prolyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 480

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 163/426 (38%), Gaps = 69/426 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G     N  +IIRE  + +G  E   P L    +   E+     + 
Sbjct: 32  VRYPVKGLYVWYPFGFAIRRNTYSIIREILDNSGHQETLFPLLIPENEFMKEAEHIKGFE 91

Query: 91  KEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +     D  D  +   PT E  +  +++  ++S+ + P   YQI   FR E +  
Sbjct: 92  NEVYWVTHGGKDPLDIPLALRPTSETAIYPMYKKWVRSHADFPLKLYQIVNTFRYETKHT 151

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++   T E ++    +    Y  I+ RL   ++P+     P    
Sbjct: 152 RPLIRLREITSFKEAHTVHATWEDAEAQVKEAIGLYTEIYRRL---AVPVLRSRRPD--- 205

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              +    AD  +                                               
Sbjct: 206 --WDKFPGADYTDA---------------------------------------------- 217

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
              D++  + +    G     + + G  ++      ++  DG+  Y     YGI + R +
Sbjct: 218 --LDAVMPDGKTLQIG----TVHHLGDNFAKTFDIKYEAPDGEQRYAHQTCYGI-SERSI 270

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           AA I    D KG++ P  +AP ++ +I I  K   +    AC+ +  RL K G  V  D 
Sbjct: 271 AATISIHGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVFAACKDVQERLKKAGIRVEVDA 330

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              + G+++   ++ G PL++ +G + + ++      R TG ++ ++L E+      +F 
Sbjct: 331 SDLRPGAKYYKWEMKGVPLRLEIGPRDLQNNVAVAVRRDTGEKDQITLLEIEAGVRLKFE 390

Query: 444 NNRPVL 449
             +  L
Sbjct: 391 AIQKSL 396


>gi|163839404|ref|YP_001623809.1| prolyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162952880|gb|ABY22395.1| prolyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 619

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/234 (42%), Positives = 138/234 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DAEIASHKLM+R G I + + GIYSWLPLG + L  V AIIREE
Sbjct: 16  LRLSTLFLRTLREDPVDAEIASHKLMVRAGYIRRAAPGIYSWLPLGLRVLGKVEAIIREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G+ E+  P L   + +  + R+  YG  + RL DR     +  PTHEE+ T + + 
Sbjct: 76  MAAIGSQEVHFPALLPCEPYEATNRWTEYGDGIFRLKDRKGNDYLLAPTHEEMFTLLVKD 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + +QIQ K+RDE RPR G+MR REF+MKD+YSFD+   G   SY     +
Sbjct: 136 LYGSYKDLPVSLFQIQNKYRDEARPRAGLMRGREFIMKDSYSFDIDDAGLDISYEAHRAA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y +IF RL L+ + ++A +G +GG  S EF+     GE     S       + +
Sbjct: 196 YFKIFERLSLEVVAVKATAGAMGGSKSEEFLHPTPVGEDTYVRSAGGYAANVEA 249



 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 3/175 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E             ARGIE GH+F  G KY+          +GK   V MGSYG+G  R 
Sbjct: 439 EGDEAPDGSGPLEIARGIETGHVFQLGRKYAEIFDLKVLDQNGKQVVVTMGSYGVGVTRA 498

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA+ E ++D +G++WP +VAP  + ++ +    +V  +  EK+ A L   G DV  DD 
Sbjct: 499 VAAIAEGNNDDRGLVWPIAVAPADVHVVAVGRDSEVF-ETAEKLAADLEAAGLDVILDDR 557

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +   G +F  A+L+G P+ + VG + + D  VE+K+R TG   ++ + + +   
Sbjct: 558 QKVSPGVKFGDAELIGVPMVLAVG-RGLVDGVVELKNRRTGEPNNVPVADTVAEV 611


>gi|254778840|ref|YP_003056945.1| threonyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254000751|emb|CAX28675.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Helicobacter pylori B38]
          Length = 612

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 154/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++       G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSRALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSTLHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P       E    A     +                        
Sbjct: 384 MQAFGFSY-EMELSTRPAKSIGDDEVWEKATDALKEALKEHRINYKIDEGGG-------- 434

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D+L    +     +++        ++ L  +  +  
Sbjct: 435 ------------AFYGPKIDIKITDALRRKWQCGTIQVDM----NLPERFKLAFTNEY-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEELKKHDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|268319258|ref|YP_003292914.1| hypothetical protein FI9785_773 [Lactobacillus johnsonii FI9785]
 gi|262397633|emb|CAX66647.1| proS [Lactobacillus johnsonii FI9785]
          Length = 565

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/225 (46%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 2/229 (0%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD  +  +        + +     + D      ++   +     A     NE   D +  
Sbjct: 338 ADWADKIIADETVKDLYNVVVGANETDYQYQNANLDRDFKVDEFADIRTANEGEPDPVDH 397

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E   
Sbjct: 398 LPLKFTTSIEVGHIFKLGTYYTDTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHL 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
              GI WP  +APF I LI +K  D+   +  EK+   LS    DV +DD  E+ G +F 
Sbjct: 458 TENGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEKELS-AKYDVLYDDRNERPGVKFN 516

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ADL+G PL++ +G K   D  VE+K  +     ++++ ++    +   
Sbjct: 517 DADLVGAPLRITIGRK-AKDGIVEVKRPMDEKATEVNISDLDAVITKEL 564


>gi|308235415|ref|ZP_07666152.1| prolyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
 gi|311114822|ref|YP_003986043.1| proline--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946316|gb|ADP39020.1| proline--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 602

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/243 (41%), Positives = 145/243 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIREE N
Sbjct: 1   MSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEEV T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHEADYLLAPTHEEVFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+M+DAYSF +  +G K +Y +   +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDAYSFSIDEDGLKSAYVEERAAYA 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLG+K + + A SGP+GG  S EF+     GE     +     + + +  T     
Sbjct: 181 RIFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMAIGEDTFALAPSGKAWNVEALTTPEMQD 240

Query: 243 ISL 245
           +  
Sbjct: 241 VDC 243



 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 2/166 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 436 RGVEIGQVFQLGLKYSKALGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLA 495

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++AP ++ ++     DQV  DA EK+   LSK G +V +DD  +   G +F  A+L+
Sbjct: 496 WPMAIAPAQVHVVA-TGKDQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELV 554

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G PL  + G   V++  +EI+ R     E + ++E       R   
Sbjct: 555 GVPLIAVAGRDTVNNGTIEIRDRNGSNVEAIPVDEAAARIVERVRE 600


>gi|328955410|ref|YP_004372743.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Coriobacterium
           glomerans PW2]
 gi|328455734|gb|AEB06928.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Coriobacterium
           glomerans PW2]
          Length = 643

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 150/447 (33%), Gaps = 46/447 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD +    +L + T M  +   G+  +LP G + +  +   +  E  
Sbjct: 231 LEEHLFRLEEAAKRDHKKLGRELGIFT-MFDEAGPGLPLYLPAGARVIRLMETWLSRELY 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVMT 115
           R G  E+  P +  +D+W  SG Y  Y   M                     P +     
Sbjct: 290 RRGYQEVITPHIYKSDVWKTSGHYGYYRDNMYFFNINEGTAEEPRLSEFGVKPMNCPGHV 349

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+++ + SYR LP  +++    +R EL     G+ R+R F   DA+ F    +      
Sbjct: 350 LIYKNDLHSYRELPIRYFEFGTVYRHELSGAVNGLFRARGFTQDDAHVF-CREDQVIDEI 408

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           + +  +   I     L        + P       +    A+    +    +         
Sbjct: 409 DSIMDTVDFIMGTFELPY-TCEISTRPDKSIGGDDMWEKAERFLAEALDRRGIPFEINAG 467

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +                     A      + K+ DSL    + S   ++    F    ++
Sbjct: 468 DG--------------------AFYGPKIDVKVKDSLGRTWQCSTIQVD----FNLPERF 503

Query: 295 SLPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 +++ AD  +    M      G++     ++     G   +W   +AP + ++I 
Sbjct: 504 ----DLSYRTADNDELRPWMLHRAIFGSIDRFLGIVIEHTAGNFPLW---LAPVQCAIIP 556

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D   +I   +   G      +  E + ++ A A+    P  ++VG K  + 
Sbjct: 557 IA---DRHLDYACEIKRLIEAAGGRAEVAEHNEPMRAKIARAEAKKVPYMLVVGDKEAAA 613

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASH 440
             V ++    G R  M ++E ++    
Sbjct: 614 RTVSVREHSEGDRGSMPIDEFLSIIEA 640


>gi|330834508|ref|YP_004409236.1| threonyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566647|gb|AEB94752.1| threonyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 562

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 167/448 (37%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + + +L  L++    D  I   ++ L +    +   G+  + P GQ   + + + +RE  
Sbjct: 141 QLQDYLQWLEKASETDHRIIGERMDLFSFH-DETGPGLVLFHPKGQLIRNEMISYMREIN 199

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +    LW  SG YD+Y  +ML   +++D  +   P +      I++S 
Sbjct: 200 SSMGYQEVYTSHVFRTVLWKISGHYDTYRDKMLIF-NKDDDELGIKPMNCPAHILIYKSR 258

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP  F +    +R E +    G++R+R F   D + F L  +  +     +   
Sbjct: 259 VRSYRDLPLRFSEFGNVYRWEKKGELYGLLRTRGFTQDDGHIF-LREDQIRDEVKTLINK 317

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            L + ++ G     + +   + P     S E    A      V                 
Sbjct: 318 TLEVLNKFGFRGDDVRINLSTRPDESIGSDEQWEKATNSLLNVLKELGTQ---------- 367

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      +  + DSL    ++S   ++    F    ++    
Sbjct: 368 ----------FIIKEKEGAFYGPKIDFDIRDSLNRWWQLSTIQVD----FNLPERF---- 409

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++  + A++     G+   W   ++P ++ ++ I   
Sbjct: 410 KLEYVDEDGSKKRPVMIHRAIYGSLDRMIAILLEHFRGRLPAW---LSPVQVRILPI--- 463

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++   KI   L + G     D  GE +  +   A   G P  VIVG K   + KV 
Sbjct: 464 SEENQEYANKILVMLRENGIRGELDPSGETLSKRIKRAYDEGVPYLVIVGRKEALEEKVT 523

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R     + + L++ I   +    N 
Sbjct: 524 IRSRGNVEVKGVPLKDFIEKINLEVRNR 551


>gi|213691491|ref|YP_002322077.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522952|gb|ACJ51699.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457566|dbj|BAJ68187.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 604

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 143/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 6   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 186 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 239



 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 438 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ + L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPSVIAPAAVHVVA-TGKDAVAFEGAEKLVSELEAKGLEVIYDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           G PL  +VG  +V+D  +E++ R    +
Sbjct: 557 GVPLVAVVGRDYVNDGTIELRDRNGENK 584


>gi|325067070|ref|ZP_08125743.1| prolyl-tRNA synthetase [Actinomyces oris K20]
          Length = 605

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 136/233 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAVIYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            RIF RLGL  + + A +G +GG  S EF+   + GE     S         +
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLHPCEIGEDTFVRSSSGYAANAEA 236



 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 92/169 (54%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIE+GHIF  G KYS  +  T    +GK   V MGSYGIG  RV+AA+ E++HD 
Sbjct: 435 LHLARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMGSYGIGVSRVMAALAEANHDD 494

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           KG+ WP  +AP+ + ++     DQ   D  E+I + L   G +V +DD  +   G +FA 
Sbjct: 495 KGLTWPVQIAPYHVQVLA-TGKDQAVFDVAEQIASSLDADGVEVLYDDRRKVSAGVKFAD 553

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A+LLG P  ++VG     +  VEI+ R TG R  +S +      S    
Sbjct: 554 AELLGLPYTLVVGRDLAKEGTVEIRDRRTGERRSVSADAAAAELSSTVR 602


>gi|325120065|emb|CBZ55617.1| hypothetical protein NCLIV_060420 [Neospora caninum Liverpool]
          Length = 781

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 149/476 (31%), Gaps = 66/476 (13%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD  +    L L        S G   WLP G K  + + A +REE    G  E+
Sbjct: 326 VEEAKKRDHRMLGQNLHLF-FFDTNVSPGSCFWLPDGAKVYNKLCAFMREEYRFRGFQEV 384

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + S DLW  SG Y +Y + M  L D   K     P +      +F+    SYR LP
Sbjct: 385 ISPNIFSCDLWKMSGHYQNYKENMY-LFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLP 443

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+EL     G+ R R F   DA+ F    +  K            ++ + 
Sbjct: 444 LRLADFGVLHRNELSGSLTGLTRVRRFQQDDAHIF-CRMDQVKQEVADALNFLFFVYDQF 502

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     +   + P            A+    +            P +             
Sbjct: 503 GFSF-ELFLSTRPKKALGDRSLWDAAEGALKEALEETGRPWQLNPGDG------------ 549

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS------------- 295
                   A      + +L+D+L    +     ++      F  +Y              
Sbjct: 550 --------AFYGPKIDIRLWDALKRPHQCGTIQLDFQLPIRFNLQYRTQDEAVAASREKA 601

Query: 296 --------------------LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                                          G    V +    +G++  + AV+     G
Sbjct: 602 KDEKSEKRTENGDEPEATKEEEFGVEQPLRPGMARPVIIHRAILGSIERMCAVVIEHTGG 661

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           K   W   ++P +  ++ I        D    +   L   G +V  D     +  +   A
Sbjct: 662 KLPFW---LSPRQCIVLPI---SDKVNDYATSVRDVLHSCGYEVGLDVSNNTVNKKIREA 715

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVIN-YASHRFSNNRPVL 449
            L  +   ++VG K  +D  V ++ R     + + S+E+++  +      N++  L
Sbjct: 716 QLQQWNYLLVVGEKERADKTVTVRDRADPEHQHVLSMEDLLQLFEKQGMPNSKKTL 771


>gi|315124065|ref|YP_004066069.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017787|gb|ADT65880.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 508

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 241 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 282



 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 63/117 (53%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 391 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  
Sbjct: 451 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL 507


>gi|300361905|ref|ZP_07058082.1| proline--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300354524|gb|EFJ70395.1| proline--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 565

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDQQFDDQKGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 2/229 (0%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD  +  V        + +     + D      ++   +     A     NE   D +  
Sbjct: 338 ADWADKIVADETVKDLYNVVVGANETDYQYQNANLDRDFKVDEFADIRTANEGEPDPVDH 397

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E   
Sbjct: 398 LPLKFTTSIEVGHIFKLGTYYTKTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAAVEQHL 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
              GI WP  +APF I LI +K  D+   +  EK+   LS    DV +DD  E+ G +F 
Sbjct: 458 TKNGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEKELSTK-YDVLYDDRNERPGVKFN 516

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ADL+G PL++ +G K   D  VE+K        ++S+ ++    +   
Sbjct: 517 DADLVGAPLRITIGRK-AKDGIVEVKRPTDEKATEISISDLDAMITKEL 564


>gi|152990768|ref|YP_001356490.1| prolyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|166980135|sp|A6Q3S4|SYP_NITSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151422629|dbj|BAF70133.1| prolyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 569

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/231 (46%), Positives = 150/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P ++ENP+DA + SH  ++R G I Q + GIY++LP+G+K LD + AI++EE
Sbjct: 1   MRFSKTFIPTMKENPKDAVLPSHIYLVRGGFITQVASGIYNFLPIGKKVLDKIRAIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+S+  +   +LW ESGR   YGKE+LR  DR +   + GPTHEE+M D+ R+
Sbjct: 61  LDKAGCQEVSLGFVTPCELWEESGRLGKYGKELLRFKDRKENCFVLGPTHEEMMVDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E  +  Y+ M  +
Sbjct: 121 RVTSYKQLPLNLYQINWKFRDEARPRFGLLRGREFLMKDGYSFHADEEDMRREYDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   + A+ G IGG+ S EF+VLA++GE  +    +     
Sbjct: 181 YRNIFGRLGLRFRAVEADVGAIGGNASKEFMVLAESGEDTIAICTECEYAA 231



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 95/179 (53%), Gaps = 1/179 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              +GIEVGHIF  GT+YS  M+ATF   DGK     MG+YGIG  R+
Sbjct: 390 EGDLCPKCGAVMKLTKGIEVGHIFQLGTRYSAAMNATFLDKDGKAKPFVMGTYGIGVSRL 449

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAA IE +HD +G IWP  +APF++ +I     D+      E++Y +L   G DV  DD 
Sbjct: 450 VAASIEQNHDERGCIWPLQIAPFEVDIIVSNIKDEEQIAFGEELYEQLKNAGVDVILDDR 509

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E+ G +    +L+GFP  +IVG K + +  V+I  R T  + ++  E+V      +  
Sbjct: 510 PERFGPKIKDFELIGFPYGIIVG-KGLKEGTVQIVQRETLDKVEIPKEDVFKTILEKVQ 567


>gi|219684484|ref|ZP_03539428.1| threonyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219672473|gb|EED29526.1| threonyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 593

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 159/448 (35%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 181 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLIFFHPNGAKIRALIEDFWRE 238

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 239 EHSKNGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 298

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 299 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVVDEIKEVL 357

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  S+     + P                  +   +    +  +      
Sbjct: 358 RFAIYMWSKFGFSSLKAYLSTKP-----------------DKSVGNDYDWEMSLKVLEEA 400

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             +      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 401 LSNFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 451

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P +  +I +   
Sbjct: 452 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQAVIIPVNN- 505

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+  +    G  +  D+   ++ ++         P   I+G +   + K+ 
Sbjct: 506 --TVEDYTIKVLNKFKNAGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREAIEEKIS 563

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L+E +     +  + 
Sbjct: 564 IRTRTNEQINGIELDEALKLILLKVRDK 591


>gi|189440768|ref|YP_001955849.1| prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|189429203|gb|ACD99351.1| Prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
          Length = 604

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 143/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 6   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 186 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 239



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 438 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPSVIAPAAVHVVA-TGKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           G PL  +VG  +V+D  +E++ R    +
Sbjct: 557 GVPLVAVVGRDYVNDGTIELRDRNGENK 584


>gi|320531911|ref|ZP_08032821.1| prolyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135880|gb|EFW27918.1| prolyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 610

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 136/233 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAIVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            RIF RLGL  + + A +G +GG  S EF+   + GE     S         +
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLYPCEIGEDTFVRSSSGYAANAEA 236



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIE+GHIF  G KYS  +  +    +GK   V MGSYGIG  RV+AA+ E++HD 
Sbjct: 435 LHLARGIEIGHIFELGRKYSQALGLSVLDENGKARVVTMGSYGIGVSRVMAALAEANHDD 494

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           KG+ WP  +AP+ + ++     DQ   D   +I + L   G +V +DD  +   G +FA 
Sbjct: 495 KGLTWPVQIAPYHVQVLA-TGKDQAVFDVAGQIASSLDADGVEVLYDDRRKVSAGVKFAD 553

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A+LLG P  V+VG     +  VEI+ R TG    +  +      S    
Sbjct: 554 AELLGLPYTVVVGRDLAREGTVEIRDRRTGEHRSVPADAAATELSATVR 602


>gi|312134020|ref|YP_004001359.1| pros [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773326|gb|ADQ02814.1| ProS [Bifidobacterium longum subsp. longum BBMN68]
          Length = 604

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 143/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 6   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 66  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 125

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 126 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGA 185

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 186 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 239



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 438 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPSVIAPAAVHVVA-TGKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           G PL  +VG  +V+D  +E++ R    +
Sbjct: 557 GVPLVAVVGRDYVNDGTIELRDRNGENK 584


>gi|290890493|ref|ZP_06553568.1| hypothetical protein AWRIB429_0958 [Oenococcus oeni AWRIB429]
 gi|290479889|gb|EFD88538.1| hypothetical protein AWRIB429_0958 [Oenococcus oeni AWRIB429]
          Length = 570

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 151/246 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  +E P +A++ SH  MLR G I Q + GIY++LPL  + ++ + +IIREE
Sbjct: 1   MKQSKIFIPTEKEVPAEAQVKSHIFMLRAGFIRQVAGGIYAYLPLANRIINKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM +P +  A+LW ESGR+ +YG +M +L DR+D+  I  PTHEE  T I   
Sbjct: 61  MSRIDANEMLMPEMIPAELWKESGRFYTYGPQMYQLKDRHDREFIMAPTHEETFTKIISD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDELRP+ G++R REF+MKDAYSF    +G   +Y+ +  +
Sbjct: 121 EIKSYKKLPLILYQIQQKFRDELRPKNGLLRGREFIMKDAYSFSSDQKGLDDAYDLIESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    + A+SG +GG  S EF  +A TGE  +  S             +F 
Sbjct: 181 YKRIFDRVGLDYREIIADSGSMGGKDSAEFQAIAATGEDIIAYSNSGKYAANIEMAEEFF 240

Query: 241 DIISLN 246
           +    +
Sbjct: 241 EKKIPD 246



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                     E       + K V  +GIE+GHIF  GT Y+  M    +   GK   + M
Sbjct: 380 FETGDFLTAKEGSISPDGKGKLVFTKGIEIGHIFKLGTFYTSKMGGQIQNEKGKLSDIIM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R+++A+ E S+D KG IWP +VAPF + LI +   ++   +  ++I   L +
Sbjct: 440 GCYGIGISRLLSAIAEQSNDPKGFIWPKAVAPFNVHLITMNTKNESQVNLAKQIDKNLQE 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G +FA +DL+G P++V+VG +      VE+K R      D+S + +
Sbjct: 500 AGFEVLVDDRKERPGVKFADSDLIGIPIRVVVG-RQADQQIVEVKARGQESTNDVSTDNL 558

Query: 435 INYASHRFSNNR 446
           I +   + +  +
Sbjct: 559 IAFLKDKLNELK 570


>gi|194467742|ref|ZP_03073728.1| prolyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194452595|gb|EDX41493.1| prolyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 577

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 108/239 (45%), Positives = 147/239 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEVPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +       I    + F
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDGDYAANIEKAESKF 239



 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 139/311 (44%), Gaps = 22/311 (7%)

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            I     DE +P   +MR  + + +   +  +  E  + +  +    YL           
Sbjct: 282 YIAKMSEDEYQPVLVLMRGDDEVNEAKVTNAIDCEELELATEEDAEKYLN---------- 331

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                 GP+G  +S E  +LAD         K  ++    +    +  I +      +  
Sbjct: 332 AHPGSLGPVG--VSEEVKILADN------YVKVLVNMACGANEDGYHYINANIDRDFRVD 383

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                 +    E   D  P        GIE+GHIF  GT YS  + A    ++G+   V 
Sbjct: 384 QFGDFRNVKEGEIAPDGKPLKFTP---GIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVI 440

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R+++AV E + D  G++WPDS+APF + +I + A  +      +KI  +L+
Sbjct: 441 MGSYGIGVTRLLSAVAEQNADENGLVWPDSIAPFDVHVIPVNAKKEDQMAMADKIDQQLT 500

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA +DL+G P++V VG K   D  VEIK R TG   ++  EE
Sbjct: 501 EAGYEVLVDDRKERAGVKFADSDLIGIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEE 559

Query: 434 VINYASHRFSN 444
           ++N        
Sbjct: 560 LVNTVEILLKQ 570


>gi|329943296|ref|ZP_08292070.1| threonyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328814843|gb|EGF84833.1| threonyl-tRNA synthetase [Chlamydophila psittaci Cal10]
          Length = 379

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 139/409 (33%), Gaps = 40/409 (9%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           +  + P G    D +    +      G  E+  P L +  LW  SG + +Y + M  L  
Sbjct: 1   MPFFHPRGMIIWDALIGYWKRLHQLAGYKEIQTPQLMNRSLWEVSGHWSNYRENMYTLK- 59

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLM 157
            +D+     P +       +++ + SY+  P    +I    R E+     G+MR R F  
Sbjct: 60  IDDEDYAIKPMNCPGCMLYYKTRLHSYKQFPLRIAEIGHVHRYEVSGALSGLMRVRAFHQ 119

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADT 216
            DA+ F LTPE  +     +      ++   GL+   +   + P      S E   LA  
Sbjct: 120 DDAHVF-LTPEQVEEETLNILHLVSELYSTFGLEY-HLELSTRPEKATIGSDELWELATA 177

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   + +      P +   +   I +                             K 
Sbjct: 178 ALERALINSNTPFIINPGDGAFYGPKIDI---------------------------HVKD 210

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              R  + G I              +  A G K   V +     G++     ++     G
Sbjct: 211 AIQRTWQCGTI-QLDMFLPERFELEYTNAQGEKSTPVMLHRALFGSIERFLGILIEHFKG 269

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +  +W   ++P  I LI +    Q      +K+     K+G  V  DD  E +  +   A
Sbjct: 270 RFPLW---LSPEHIRLITVADRHQ---PRAQKLATAWQKLGLIVTVDDSNESVSKKIRNA 323

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +     V +G + +  + + I+ R   +  DM+ ++ IN      ++
Sbjct: 324 QNMQVNYMVTLGDREIEQNTLAIRTRDNRVLNDMTEDKFINTILEEKNS 372


>gi|302656156|ref|XP_003019834.1| hypothetical protein TRV_06122 [Trichophyton verrucosum HKI 0517]
 gi|291183606|gb|EFE39210.1| hypothetical protein TRV_06122 [Trichophyton verrucosum HKI 0517]
          Length = 764

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/482 (17%), Positives = 153/482 (31%), Gaps = 69/482 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 310 KLLQEHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 365

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 366 TEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMF 424

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T          +
Sbjct: 425 GHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTDNQIMEEIEGL 483

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 484 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGADWEIDEGDG 542

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--- 294
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 543 AFYGPKIDITIS-------------------DALKREHQCATIQLDYQLPLNFKLEYMTG 583

Query: 295 ----------------------SLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAV 328
                                 S P  A    +     G+   V +    IG+      +
Sbjct: 584 ETVPKSAAPATSKAEAKPAEGDSNPAQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGI 643

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     GK   WP  ++P +I ++ + A      D  E++   L     +V  D  G  +
Sbjct: 644 LIEHFGGK---WPFWLSPRQILIVPVMAS---ANDYVEELQEILRGDKLNVDIDLSGHTM 697

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSN 444
             +     L  +    +VG++      V I++R     +     + LEE           
Sbjct: 698 QKKIRNGQLAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKE 757

Query: 445 NR 446
            R
Sbjct: 758 RR 759


>gi|296129629|ref|YP_003636879.1| threonyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021444|gb|ADG74680.1| threonyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 670

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 142/455 (31%), Gaps = 51/455 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD     ++L L +    +   G+  + P G      +    R    + G
Sbjct: 249 YLERIAEAERRDHRKLGNELDLFS-FPEEIGSGLAVFHPKGGIIRMEMEEYSRRRHVQAG 307

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              ++ P +    L+  SG  D Y   M                 R  +     P +  +
Sbjct: 308 YSFVNSPHITKEQLFQISGHLDWYADGMYPPMQLDEERDAEGHVKRQGQNYYLKPMNCPM 367

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E  K 
Sbjct: 368 HNLIFAARGRSYRELPLRLFEFGTVYRYEKSGVVHGMTRARGFTQDDAHIY-CTREQMKD 426

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S +    A     +V  +      P
Sbjct: 427 ELTSLLTFVLDLLKDYGLDDFYLELSTRNPEKSVGSDDVWDEATETLREVAEASGLELVP 486

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++    F   
Sbjct: 487 DPG--------------------GAAFYGPKISVQAKDAIGRTWQMSTIQLD----FNLP 522

Query: 292 TKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +   DG     V +     G++    AV+   + G    W   +AP ++ 
Sbjct: 523 ERF----ELEYTAPDGTRQRPVMIHRALFGSIERFFAVLTEHYAGAFPAW---LAPVQVL 575

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            + +    +      +++  RL   G     D   ++ G +   A     P  +I G + 
Sbjct: 576 AVPVA---EPFEPYLQQVVDRLRAQGVRAEVDRSDDRFGKKIRNASTQKIPFVLIAGGED 632

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                V  ++R       + ++E +        + 
Sbjct: 633 ADAGAVSFRYRDGRQDNGVPVDEAVERIVAAVRDR 667


>gi|302036852|ref|YP_003797174.1| prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|190343267|gb|ACE75655.1| prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300604916|emb|CBK41249.1| Prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 543

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 147/206 (71%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR G+I + + GIY++LPLG + L  +  I+REE NR GA E+ +P    A+LW E+GR
Sbjct: 1   MLRAGLIRKVAAGIYTYLPLGLRVLRKIERIVREEMNRAGAQELLMPVASPAELWRETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +D YGKE+LR  DR+++    GPTHEEV+TD+FR  ++SYR +P  FYQIQ KFRDE+RP
Sbjct: 61  WDFYGKELLRFKDRHERDFCLGPTHEEVITDLFRREVRSYRQMPLNFYQIQTKFRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFG+MR REF+MKDAYSFD    G++ +Y KM+ +Y RIF R GL   P+ A++G IGG 
Sbjct: 121 RFGLMRGREFIMKDAYSFDRDEAGARLNYQKMYDAYNRIFTRCGLTFRPVEADTGLIGGT 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            SHEF+VLA+TGE  +  S+D     
Sbjct: 181 SSHEFMVLAETGEETIVYSEDGTYAA 206



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 3/197 (1%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             +        +D+ N +  DS P       +A+GIEVGH+F  GTKYS  M ATF  A 
Sbjct: 345 NWERDFKVDQFADLRNARAGDSSPRKDGTLKTAKGIEVGHVFMLGTKYSQAMKATFLDAQ 404

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G++    MG YGIG  R  AA +E +HD KGI WP  +APF ++L+ +    Q      E
Sbjct: 405 GQEQLAVMGCYGIGVSRTAAASVEQNHDAKGIKWPVPIAPFHVTLLPLSQ-SQPVTQLAE 463

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y  + + G +V WDD  E+ G +F  ADL+G P  +++G K ++  +VE+K R TG  
Sbjct: 464 TLYRAMQEAGIEVLWDDRDERAGVKFNDADLIGAPYHLVIGEKGLAQGQVELKLRHTGET 523

Query: 427 EDMSLEEVINYASHRFS 443
           + ++ ++V+   S    
Sbjct: 524 QKVAPDQVVALLSSFLK 540


>gi|326477787|gb|EGE01797.1| threonyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 763

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 153/481 (31%), Gaps = 68/481 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 310 KLLQEHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 365

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 366 TEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMF 424

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T          +
Sbjct: 425 GHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTDNQIMEEIEGL 483

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 484 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGADWEIDEGDG 542

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--- 294
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 543 AFYGPKIDITIS-------------------DALKREHQCATIQLDYQLPLNFKLEYMTG 583

Query: 295 ---------------------SLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVI 329
                                S P  A    +     G+   V +    IG+      ++
Sbjct: 584 ETIPKSAAPANPKAEAKPEGDSNPTQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGIL 643

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                GK   WP  ++P +I ++ + A      D  E++   L     +V  D  G  + 
Sbjct: 644 IEHFGGK---WPFWLSPRQILIVPVMAS---ANDYVEELQEILRGDKLNVDIDLSGHTMQ 697

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNN 445
            +     L  +    +VG++      V I++R     +     + LEE            
Sbjct: 698 KKIRNGQLAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLIPLEEARAKLRALRKER 757

Query: 446 R 446
           R
Sbjct: 758 R 758


>gi|305433094|ref|ZP_07402250.1| proline--tRNA ligase [Campylobacter coli JV20]
 gi|304443795|gb|EFM36452.1| proline--tRNA ligase [Campylobacter coli JV20]
          Length = 569

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MKFSKLYAPSLKEAPKDATLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++             +
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAVRAN 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCDEERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 1/179 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    +    K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 ENDCCAKCGAKLKLSKGIEVGHIFKLGQKYSKAMNANFLDENGKSKPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  LS  G +V  DD 
Sbjct: 452 LAVAIEANHDEKGCIWNKTLAPFTLEIIISNIKDEKSLEFATKLYEDLSNAGIEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E+ G +    +L+GFP  ++VG K +   ++E   R T  ++ +S +EV ++      
Sbjct: 512 NERFGVKMNDFELMGFPYALVVG-KGLEKDELEFIDRKTLEKKIISSKEVFDFIKKSVE 569


>gi|171910788|ref|ZP_02926258.1| threonyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 652

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 146/502 (29%), Gaps = 96/502 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +K+   + +   RD      +L L   +  +  +G+  WLP G      +   I EE  
Sbjct: 188 LAKHLEQLEEAKKRDHRKLGRELQLFA-IDEKVGQGLILWLPKGAVIRQELQNFIGEELR 246

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------------------- 102
           + G  ++  P +   +L+  SG +  Y +        ND+                    
Sbjct: 247 KQGYQQVFTPHIGKLELYKTSGHFPYYKESQFSPVVENDELAKAADCGCSCAEVMARLEG 306

Query: 103 -------------------------------AMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
                                            +  P +      I+    KSYR+LP  
Sbjct: 307 VSKKLREEINSRTGQDTITADRVMPEEDLMDGFLLKPMNCPHHIRIYAQSPKSYRDLPVR 366

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +    +R E      G+ R R F   DA+ F  T +  +            +   LG+
Sbjct: 367 LAEFGTVYRWEQSGELGGLTRVRGFTQDDAHLF-CTEDQVEQEIMGCLSLVKTVLTTLGM 425

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +R        +         D  E                                
Sbjct: 426 SDYRVRVGLRDPDSNKYTGTAESWDKAEA------------------------------S 455

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGA 305
              A          E    +    K        +G  +  GT    Y+ P     T+ GA
Sbjct: 456 CRKAASTLGVPFTEEPGEAAFYGPKIDFVVKDVIGREWQLGTVQVDYNNPVRFDLTYIGA 515

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D   H  V +     G+M     V+     G   +W   +AP ++ ++ +    +     
Sbjct: 516 DNAAHRPVMIHRAPFGSMERFTGVLIEHFAGHFPVW---LAPEQVRVLTV---SEKSDAF 569

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L   G  V  D   ++IG++   A +   P  +++G K  +   V ++H   G
Sbjct: 570 ANEVLNELKAKGVRVVLDQSSDKIGAKIRNAQIDKIPYMLVIGEKEANSGAVAVRHSKKG 629

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                +L E +       +  +
Sbjct: 630 DLGVKALGEFVTGLQEEIAERK 651


>gi|296394267|ref|YP_003659151.1| prolyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181414|gb|ADG98320.1| prolyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 599

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+A+HKL++R G + + S G+++WLPLG K L  V A++REE 
Sbjct: 4   RLSELFVRTLREDPADAEVANHKLLVRGGYVRRVSPGVFTWLPLGLKVLRQVEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L     +  S R+  YG  + RL DR     +  PTHEE+   I +  
Sbjct: 64  DAIGAQEILLPALAPRQPYETSNRWTEYGDNLFRLKDRKGGDYLLAPTHEELFALIVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G+K +Y+    +Y
Sbjct: 124 YTSYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDAYSFDVDEAGNKAAYHAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG+  + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFDRLGVSYVIVAATSGAMGGSASEEFLAESAIGEDTYVRC 226



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 79/148 (53%), Gaps = 1/148 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  GTKY+   S    G +GK   + MGSYGIG  R+V  + E   D KG+ 
Sbjct: 418 RGIEIGHVFALGTKYTDAFSVDVLGENGKPARLIMGSYGIGVSRLVGVIAEQWLDEKGLR 477

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  VAPF++ +++          A     A L   G  V  DD     G +FA A+LLG
Sbjct: 478 WPPQVAPFQVHVLSTGKGGAEAEAAERY-AAELESHGLRVLLDDRKASPGVKFADAELLG 536

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            P+ V+VG  +  + KVE+K R +G   
Sbjct: 537 APVVVVVGRDWAGEGKVELKERFSGASG 564


>gi|284991611|ref|YP_003410165.1| threonyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284064856|gb|ADB75794.1| threonyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 690

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 143/453 (31%), Gaps = 56/453 (12%)

Query: 13  ENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           E   +AE   H+     L L +    +   G+  + P G      +    R      G  
Sbjct: 256 EQVAEAERRDHRRLGAELDLFS-FPDEIGSGLAVFHPKGGVVRREMEDYSRRRHEEAGYS 314

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMT 115
            ++ P +    L+  SG  + Y + M                 R  +     P +  V  
Sbjct: 315 FVNTPHITKGQLFQTSGHLEWYAEGMYPAMHLDEERDAEGKVRRQGQDYYLKPMNCPVHN 374

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            +FRS  +SY+ LP   ++    +R E      G+ R+R F   DA+ +  TPE  +   
Sbjct: 375 LVFRSRGRSYKELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTPEQMQGEI 433

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
             +    L +    GL+   +   +  P     S E    A     +   +        P
Sbjct: 434 RSLLQFVLDLLADYGLEDFYLELSTRNPEKSIGSDEDWERATDALREAAEASGLDLVLDP 493

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                  A  +   + +  D++    ++S   +++     FG +
Sbjct: 494 G--------------------GAAFYAPKISVQARDAIGRTWQMSTIQVDLMLPERFGLE 533

Query: 294 YSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           Y+          DG     V +     G+M     V+   + G    W   +AP ++  I
Sbjct: 534 YTAA--------DGTRQRPVMIHRALFGSMERFFGVLTEHYAGAFPAW---LAPVQVVGI 582

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +             +  +L   G  V  DD  +++  +   A     P  +I G+    
Sbjct: 583 PVT---DEQVGYLRDVALQLRARGIRVEVDDSDDRMQKKIRTASKQRIPFVLIAGATDAE 639

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V  + R       + +E+ +   +   +  
Sbjct: 640 AGAVSFRFRDGSQHNGVPVEKAVAAIAEWVAGR 672


>gi|296171596|ref|ZP_06852836.1| proline--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894051|gb|EFG73813.1| proline--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 582

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 132/223 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIERIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  DAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFLMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF+RL ++ + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFNRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  G
Sbjct: 417 SARGIEVAHIFQLGRKYTDAFAADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP SVAPF + L+ I   D   R     +   L ++G +V  DD     G +F  A+L
Sbjct: 477 LRWPSSVAPFDVHLV-IANKDAEARTGATGLATDLDRLGVEVLLDDRQASPGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LG P  ++VG +  ++  VE++ R  G   ++++
Sbjct: 536 LGVPWILVVG-RGWANGVVELRDRFGGQTRELAV 568


>gi|302497531|ref|XP_003010766.1| hypothetical protein ARB_03468 [Arthroderma benhamiae CBS 112371]
 gi|291174309|gb|EFE30126.1| hypothetical protein ARB_03468 [Arthroderma benhamiae CBS 112371]
          Length = 764

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/482 (17%), Positives = 153/482 (31%), Gaps = 69/482 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 310 KLLQEHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 365

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 366 TEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMF 424

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T          +
Sbjct: 425 GHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTDNQIMEEIEGL 483

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 484 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGADWEIDEGDG 542

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--- 294
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 543 AFYGPKIDITIS-------------------DALKREHQCATIQLDYQLPLNFKLEYMTG 583

Query: 295 ----------------------SLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAV 328
                                 S P  A    +     G+   V +    IG+      +
Sbjct: 584 EAVPKSAAPATSKAEAKPAEGDSNPAQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGI 643

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     GK   WP  ++P +I ++ + A      D  E++   L     +V  D  G  +
Sbjct: 644 LIEHFGGK---WPFWLSPRQILIVPVMAS---ANDYVEELQEILRGDKLNVDIDLSGHTM 697

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSN 444
             +     L  +    +VG++      V I++R     +     + LEE           
Sbjct: 698 QKKIRNGQLAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKE 757

Query: 445 NR 446
            R
Sbjct: 758 RR 759


>gi|296125160|ref|YP_003632412.1| prolyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296016976|gb|ADG70213.1| prolyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 578

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 111/229 (48%), Positives = 154/229 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P L+E P DA IAS+KLM+R  +  + S G+YS+LPLG + L  ++ IIREE
Sbjct: 1   MRLSKLFMPTLKEAPSDAIIASNKLMIRAALARKISNGLYSYLPLGVRVLSKISNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++
Sbjct: 61  MDAIGSNECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +
Sbjct: 121 EIQSYKDLPLTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y +IF R+GL ++ ++A+SG +GG+ S EF+VL++ GE  +        
Sbjct: 181 YTKIFKRMGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSKCDY 229



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 2/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D   + ++  Q         D    K  D  PE        +G+E+GHIF  G KY+   
Sbjct: 364 DDTHIKNVNVQRDFNIDVWGDFRTAKEGDKCPECGETLYQKKGLELGHIFKLGDKYTQAF 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +      + K+    MG YGIG  R +A+VIE ++D KGII+P SVAP++  ++ I    
Sbjct: 424 NFKVLDENNKEITPIMGCYGIGVNRALASVIEQNYDDKGIIFPISVAPYEAIVVAIDKEG 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      E+IY  L+ +  +  +DD  E++G +    DL+G P++++VG K +    VE 
Sbjct: 484 EESFKKAEEIYNALNALKVETMFDDRKERLGVKLNDCDLIGIPMRIMVGKKSLQRGVVEF 543

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           K R +    ++  +E++ Y   +
Sbjct: 544 KLRSSSESIEVKADEIVEYVKAK 566


>gi|152992232|ref|YP_001357953.1| prolyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166980164|sp|A6Q7Y7|SYP_SULNB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151424093|dbj|BAF71596.1| prolyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 568

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/230 (47%), Positives = 150/230 (65%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIRE 59
           MR S+  +P  +E P DA +ASH  ++R G I      G+Y++LPLG+K LD V  +++E
Sbjct: 1   MRFSRLLIPTTKETPNDATLASHIYLIRGGFIQSVGGSGLYNFLPLGKKVLDRVRNVVKE 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G  E+S+  +  A LW ESGRY+ YGKE+LR  DR +   + GPTHEE+M ++ R
Sbjct: 61  ELDKAGCQEVSLSFVTPASLWEESGRYEKYGKELLRFKDRKNNEFVLGPTHEEMMVNLVR 120

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +KSY+ LP   YQI LKFRDE+RPRFG+MR REFLMKD YSF  + E  K  ++ M  
Sbjct: 121 QSVKSYKQLPLNLYQINLKFRDEIRPRFGLMRGREFLMKDGYSFHTSEEDMKREFDLMEE 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           +Y +IF RLGL+   + A+SG IGG  S EF+VLAD+GE  +    +   
Sbjct: 181 TYKKIFTRLGLEFRVVEADSGAIGGSGSKEFMVLADSGEDTIVVCDNCDY 230



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 96/179 (53%), Gaps = 1/179 (0%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E              +GIE GHIF  GT+YS P+ ATF   +GK   + MG+YGIG  R
Sbjct: 391 QEGDLCPKCGAPMRYTKGIEAGHIFQLGTQYSEPLGATFLDENGKAQPMVMGTYGIGVSR 450

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++AA+IE +HD +G IW    APF + LI     D+      EK+Y  L+  G DV +DD
Sbjct: 451 LLAAIIEQNHDDRGCIWTKESAPFDLQLIVSNIKDETQVALGEKLYEALTAKGLDVLFDD 510

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             ++ G++    +LLG P  V++G K + D  VE   R   ++E++S E +++    R 
Sbjct: 511 RKDRFGAKMKDYELLGIPYAVVIGKK-LQDGLVEFISREGLVKEEVSAEAILDVVGERV 568


>gi|118472270|ref|YP_886958.1| prolyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|302595855|sp|A0QVM0|SYP_MYCS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118173557|gb|ABK74453.1| prolyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 585

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 136/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     GIYSWLPLG + L  +  ++R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRAVGPGIYSWLPLGLRVLRKIENVVRSEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L     +  + R+  YG  + RL DR +   + GPTHEE+ T   +  
Sbjct: 64  NAIGAQEILLPALLPRGPYETTNRWTEYGDTLFRLQDRRNNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+  +G K++Y +   +Y
Sbjct: 124 YSSYKDFPVILYQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDDGLKNAYYQHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG++ + + A SG +GG  S EF+  ++ GE      
Sbjct: 184 QRIFARLGVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRC 226



 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 2/168 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIE+GHIF  G KY+   SA   G DGK   + MGSYGIG  R+VA + E  HD 
Sbjct: 419 LTSARGIEIGHIFQLGRKYTDAFSADVLGEDGKPLRLTMGSYGIGVSRLVAVIAEQQHDQ 478

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G+ WP SVAPF + ++ +   D   R    ++ A L ++G +V +DD     G +F  A
Sbjct: 479 LGLRWPSSVAPFDVHVV-VANKDAGARAGAAELVADLDRLGHEVLFDDRQASPGVKFKDA 537

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +LLG P  V+VG +  +D  VE+++R TG   +++ +      S   +
Sbjct: 538 ELLGMPWIVVVG-RGWADGVVELRNRFTGETREIAADGAAAEISSVLA 584


>gi|327308738|ref|XP_003239060.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326459316|gb|EGD84769.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 764

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/482 (17%), Positives = 153/482 (31%), Gaps = 69/482 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 310 KLLQEHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 365

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 366 TEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMF 424

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T          +
Sbjct: 425 GHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTDNQIMEEIEGL 483

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 484 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGADWEIDEGDG 542

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--- 294
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 543 AFYGPKIDITIS-------------------DALKREHQCATIQLDYQLPLNFKLEYMTG 583

Query: 295 ----------------------SLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAV 328
                                 S P  A    +     G+   V +    IG+      +
Sbjct: 584 ETVPKSAAPATSKAEAKPAEGDSNPAQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGI 643

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     GK   WP  ++P +I ++ + A      D  E++   L     +V  D  G  +
Sbjct: 644 LIEHFGGK---WPFWLSPRQILIVPVMAS---ANDYVEELQEILRGDKLNVDIDLSGHTM 697

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSN 444
             +     L  +    +VG++      V I++R     +     + LEE           
Sbjct: 698 QKKIRNGQLAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKE 757

Query: 445 NR 446
            R
Sbjct: 758 RR 759


>gi|237752688|ref|ZP_04583168.1| prolyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376177|gb|EEO26268.1| prolyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 582

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 108/229 (47%), Positives = 156/229 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P  +E P+D  + SH+ ++R G I Q   GIY++LPLG++ LD + +I++EE
Sbjct: 1   MRFSKIFIPTFKEAPKDVVLKSHEYLIRGGFIQQIGSGIYNFLPLGKRVLDKIKSIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++  +  A+LW +SGR++ YGKE+LR  DR D A + GPTHEEV+T++ ++
Sbjct: 61  MDNAGANEVTLGFVTPANLWQKSGRFERYGKELLRFNDRKDNAFVLGPTHEEVITELVKA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE+RPRFG+MR+REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 NVKSYKQLPLHLYQINLKFRDEMRPRFGLMRAREFIMKDGYSFHSNFEDLKREFDLMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y +IF RLGL    + A+SG IGG  S EF+VLA++GE  +        
Sbjct: 181 YSKIFTRLGLDFRAVFADSGAIGGSGSKEFMVLANSGEDTICVCDTCYY 229



 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 1/174 (0%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K    +GIE GHIF  GTKYS  M ATF    GK     MG YGIG  R+++A
Sbjct: 402 CGESKGGKLYFTKGIEAGHIFQLGTKYSSAMDATFLDESGKAQPFIMGCYGIGVSRLLSA 461

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +IE  HD KG+IW  + APF + ++     D    +  EKIY  L+K G +   DD  E+
Sbjct: 462 IIEQHHDKKGMIWTQATAPFDVDIMVSNIKDSAQLEMGEKIYTALNKEGIECLLDDRAER 521

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G++ A  +L+GFP  +I+G K +   ++E+  R    RE + + + +   +  
Sbjct: 522 YGAKIADFELIGFPFGIIIG-KGLEKGEIELVRRKDLSREVLKVSDFMALIAEL 574


>gi|289178315|gb|ADC85561.1| Prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 615

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/283 (36%), Positives = 156/283 (55%), Gaps = 1/283 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE
Sbjct: 15  LRMSTLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 75  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 134

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 135 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGA 194

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T   
Sbjct: 195 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALHTPAV 254

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + +  +   +           + +E +  +  E  R   R  +
Sbjct: 255 EAVDCSQTPDATKRATPNARTI-DEMIAFANAEYPREDGRDWQ 296



 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 6/253 (2%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +R   GP+G            T ET  +     +           ++ +    +V     
Sbjct: 363 VRGYIGPMGFGPQARGDDG--TAETLRYLIDAHVAEGSAWFTGADEEGVDYYDLVYGRDF 420

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V
Sbjct: 421 KADDVVEAVQVRDGDMSPDGSGPLSFERGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPV 480

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RV+A + E+ HD KG+ WP ++AP ++ ++     D+   +A E++   L
Sbjct: 481 WMGCYGIGVSRVLACIAETHHDDKGLAWPMNIAPAQVHVMA-TGKDEAAFEAAERLVDEL 539

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           S  G +V +DD  +   G +F  A+L+G P+  + G   V++  +E++ R     E++S+
Sbjct: 540 SANGIEVLYDDRRKVSPGVKFKDAELIGVPIIAVAGRDTVNNGTIEVRDRDGSNSENISV 599

Query: 432 EEVINYASHRFSN 444
           + V      R   
Sbjct: 600 DSVAQVIVDRVHE 612


>gi|158313600|ref|YP_001506108.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|238686857|sp|A8LE67|SYT_FRASN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|158109005|gb|ABW11202.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 658

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 144/445 (32%), Gaps = 39/445 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +    R     
Sbjct: 246 KAYQHRLAEAEKRDHRRLGAELDLFS-FPTEIGPGLAVFHPKGGAIRTVMEDYSRRRHIE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   ++ P +  +DL+  SG  D +   M               P +  +   IFRS  
Sbjct: 305 AGYEFVNTPHITKSDLYEISGHLDWFADGMYPPMQLDGGADYYLKPMNCPMHILIFRSRG 364

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ R R     DA+ F    E      + +    
Sbjct: 365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAR-EQLPTELDTVLKFV 423

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +    GL+   +   + P G  +  +      T   +   SK  ++  +      F  
Sbjct: 424 LGLLRDYGLEDFYLELSTRPPGKAIGSDKEWEEATELLREAASKQDLELVMDEGGGAFYG 483

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                                 + +  D++    ++S   ++    F    ++      T
Sbjct: 484 -------------------PKISVQARDAIGRTWQLSTIQVD----FQLPQRF----DMT 516

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++ ADG       +     G +    A++   + G     P  +AP ++  I I      
Sbjct: 517 YQAADGTRQRPFMIHRALFGTIERFFAILLEHYAGA---LPPWLAPVQVVGIPIT---DE 570

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                  + A+L + G  V  D   +++  +   A     P  ++ G + V+   V  + 
Sbjct: 571 HVPYLTDVAAKLRQRGIRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDEDVAKGAVSFRF 630

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R    R  + ++E +          
Sbjct: 631 RDGTQRNGVPVDEAVAEILDAVERR 655


>gi|319948036|ref|ZP_08022210.1| prolyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438275|gb|EFV93221.1| prolyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 581

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 139/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVLSHKLLVRAGYIRRVAPGVYSWLPLGLRTLRRVEQVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+S+P L   + +  +GR+  YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  DAFGAQEISLPALLPREPYETTGRWTEYGPALFRLKDRKGNDMMLGPTHEELFTLTVQGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDVDDAGLGRSYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG++ +   A SG +GG  S EF+ ++  GE     S
Sbjct: 184 QRIFDRLGIEYVICAATSGAMGGSASEEFLAVSAAGEDTFVRS 226



 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 2/173 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ARGIE+GHIF  G KY+        G +GK   V MGSYGIG  R+VA + 
Sbjct: 409 PDGHGTLTLARGIEIGHIFQLGRKYTDAFGFDVLGENGKPARVTMGSYGIGVSRLVAVLA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E   D KG++WP   AP  + ++ I   DQ   D    +     +   +V +DD     G
Sbjct: 469 EQFADDKGLVWPAEAAPADVHVV-IANKDQAAIDGAATLVEAFDRARLEVLFDDRKASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +F  A+L+G P  V+VG +  S+  VE++HR TG    ++++          
Sbjct: 528 VKFKDAELIGVPWVVVVG-RGWSEGTVELRHRATGDVTQVAVDGAAEEIIRLI 579


>gi|32265941|ref|NP_859973.1| threonyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|73919797|sp|Q7VJ09|SYT_HELHP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|32261990|gb|AAP77039.1| threonyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 604

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 157/441 (35%), Gaps = 40/441 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      ++ L T    +   G+  WLP G +   N+  ++ +    
Sbjct: 196 KDYLFTLEEAKKRDHRKLGQEMGLFT-FDEEIGAGLPIWLPKGARLRHNIEHLLTQALKE 254

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  +D+W +SG Y +Y + M      +++     P +      +++S  +
Sbjct: 255 RGYEPVRGPEILKSDVWKKSGHYSNYKENMY-FTIIDEQEYGIKPMNCVGHIKVYQSSPR 313

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  FY+  +  R E      G++R REF   DA+ F +T    K   N++     
Sbjct: 314 SYRELPLRFYEYGIVHRHERSGVLHGLLRVREFTQDDAHIFCMTS-QIKSEVNQILDFTK 372

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I +  G     M   + P     + E    A                            
Sbjct: 373 GIMNAFGFHY-EMELSTRPQKSIGNDEVWENATAALKSALEENHISYQIDEGGG------ 425

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D+L    +     I++     F   Y+   +   
Sbjct: 426 --------------AFYGPKIDIKITDALKRKWQCGTIQIDMNLPERFELSYTDEHNVQV 471

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                    V +    +G+     A++     G+  ++   +AP ++ LI I    +   
Sbjct: 472 -------QPVMIHRAILGSFERFVAILTEHFGGEFPLF---IAPTQVILIPIG---EAQL 518

Query: 363 DACEKIYAR-LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +    +  + +++ G      D  E +  +  +A+    PL V++G+K V    + I+ R
Sbjct: 519 EYARILRDKIITQSGAYAELMDKNESLSKKIRLAEKQRVPLIVVIGAKEVESKILAIRDR 578

Query: 422 LTGIREDMSLEEVINYASHRF 442
               + ++  E  I     + 
Sbjct: 579 REKSQYELPEEAFIATLKTKI 599


>gi|241190576|ref|YP_002967970.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195982|ref|YP_002969537.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|240248968|gb|ACS45908.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250536|gb|ACS47475.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793563|gb|ADG33098.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9]
          Length = 605

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/283 (36%), Positives = 156/283 (55%), Gaps = 1/283 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE
Sbjct: 5   LRMSTLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 125 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T   
Sbjct: 185 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALHTPAV 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + +  +   +           + +E +  +  E  R   R  +
Sbjct: 245 EAVDCSQTPDATKRATPNARTI-DEMIAFANAEYPREDGRDWQ 286



 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 6/253 (2%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +R   GP+G            T ET  +     +           ++ +    +V     
Sbjct: 353 VRGYIGPMGFGPQARGDDG--TAETLRYLIDAHVAEGSAWFTGADEEGVDYYDLVYGRDF 410

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V
Sbjct: 411 KADDVVEAVQVRDGDMSPDGSGPLSFERGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPV 470

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RV+A + E+ HD KG+ WP ++AP ++ ++     D+   +A E++   L
Sbjct: 471 WMGCYGIGVSRVLACIAETHHDDKGLAWPMNIAPAQVHVMA-TGKDEAAFEAAERLVDEL 529

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           S  G +V +DD  +   G +F  A+L+G P+  + G   V++  +E++ R     E++S+
Sbjct: 530 SANGIEVLYDDRRKVSPGVKFKDAELIGVPIIAVAGRDTVNNGTIEVRDRDGSNSENISV 589

Query: 432 EEVINYASHRFSN 444
           + V      R   
Sbjct: 590 DSVAQVIVDRVHE 602


>gi|320159528|ref|YP_004172752.1| threonyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319993381|dbj|BAJ62152.1| threonyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 623

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 157/445 (35%), Gaps = 34/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L +      +   G+  W P G   ++ +  + +E + 
Sbjct: 207 LEQYLWRLEEAKKRDHRKLGKELDIYL-FDDEIGPGLPLWTPRGGAIIEEIEKLAKEMEF 265

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P L   DL++ SG    Y + M    +         P +  +   IF S  
Sbjct: 266 KYGYERVRTPHLAKEDLYLRSGHLPYYAESMYPPMELEGVRYYVKPMNCPMHHKIFASKP 325

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +    +R E     FG+MR R   M D++ +  + E  +  +  +   Y
Sbjct: 326 RSYRELPVRLAEYGTCYRYEKSGELFGLMRVRSMQMNDSHIY-CSEEQFEQEFVGVIHLY 384

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L  F   G++   MR  +                 G  + + +   +            D
Sbjct: 385 LEYFRLFGIQDYLMRLST-------------HHPRGLGKKYVNNPELWRKTEDMVRKALD 431

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +  +  +     A      + ++  ++     ++   ++      F  K+       
Sbjct: 432 NNGIPYV--EIADEAAFYGPKIDVQVKSAIGREFTLATNQVDFAQPERFDLKF------- 482

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                G ++  + +    +     +   +   + G   +W   ++P ++ +I I      
Sbjct: 483 -INEKGEEERPLIIHRAPLSTHERLIGFLLEHYAGAFPVW---LSPEQVRIIPIT---DA 535

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++  RL  +      D   +++ ++   A LL  P  ++VG +      V ++ 
Sbjct: 536 QNEYAKQLERRLRALEVRATADLDSDRMNAKIRKAQLLKIPYMLVVGEREAQAGAVALRK 595

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G ++ +S++E +     + S  
Sbjct: 596 RD-GTQQTLSVDEFVALLQEKISTR 619


>gi|187736219|ref|YP_001878331.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426271|gb|ACD05550.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 630

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 152/468 (32%), Gaps = 72/468 (15%)

Query: 13  ENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +A    H+ + R  G+        +G+  W P G     ++   I EE ++ G  +
Sbjct: 194 ERLEEARRRDHRKLGRELGLFCIDESVGQGLILWKPKGALIRRSLQDFITEELDKLGYSQ 253

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------------------KAM 104
           +  P +   DL+  SG +  Y +         D                        +  
Sbjct: 254 VYTPNIGKLDLYRTSGHFPYYQESQYAPIPERDAMEKLSQEGASCAELFNGLATGTIEGY 313

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM-RSREFLMKDAYSF 163
           +  P +      I+ +   SYR+LP    +    +R E     G M R R F   DA+ F
Sbjct: 314 MLKPMNCPHHIKIYANDAHSYRDLPVRLAEFGTVYRWEQSGELGGMTRVRGFTQDDAHIF 373

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             TP+       +       IF  LG+    +R        D         D  E  +  
Sbjct: 374 -CTPDQLAGEIRQCLGIVKTIFGTLGMTDYRVRLSMRDPESDKYVGSPENWDKAEQAL-- 430

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                         D+ +               A      +  + D+             
Sbjct: 431 -----REAAEWLGADYSEEAGEA----------AFYGPKIDFIVRDA------------- 462

Query: 284 VGHIFYFGT---KYSLP--MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKG 337
           +G  +  GT    Y+LP      + GAD K H   M      G+M     ++    +GK 
Sbjct: 463 IGREWQLGTVQVDYNLPERFDLHYTGADNKPHRPVMVHRAPFGSMERFTGLLIEHFEGKF 522

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             W   ++P ++ ++ I        D        L+  G  V  D+  ++IG++   A L
Sbjct: 523 PTW---LSPEQVRVLPI---SDKVTDVAAAHRTALAARGVRVTVDETPDKIGAKIRNARL 576

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              P  +++G +   D  V ++HR  G    M  E+  +  +   +  
Sbjct: 577 DRVPYMLVLGQREAEDGTVSVRHRDKGDLGAMPFEQFADLVAREIAER 624


>gi|322689774|ref|YP_004209508.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691722|ref|YP_004221292.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456578|dbj|BAJ67200.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320461110|dbj|BAJ71730.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 614

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 143/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 16  LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 76  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 136 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 196 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 249



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 448 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 507

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 508 WPSVIAPAAVHVVA-TGKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 566

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           G PL  +VG  +V+D  +E++ R    +
Sbjct: 567 GVPLVAVVGRDYVNDGTIELRDRNGENK 594


>gi|320008235|gb|ADW03085.1| prolyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 565

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 100/230 (43%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R G + + + GI+SWLPLG+K L+NV  ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLNHKLLVRAGYVRRTAAGIWSWLPLGKKVLENVTRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  SGRYD YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGGQEVLLPALLPKEAYEASGRYDEYGDLLFRLQDRKGADYLLGPTHEEIFTQVVKDM 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   +Y     +Y
Sbjct: 126 CSSYKDLPVILYQIQTKYRDEARPRAGVLRGREFQMKDSYSFDTTDEGLAEAYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +RIF RLGL    + A SG +GG  S EF+  A  GE       +     
Sbjct: 186 IRIFERLGLDHRVVSAVSGAMGGSASEEFLAPAPAGEDTFVDCPNCDYAA 235



 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 6/227 (2%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E   + +   +            +     ++V           DV   +  D  P     
Sbjct: 341 EKVRYIADPRVAAGTAWITGANKEGKHAKNVVAGRDFEVDDYLDVVVVEAGDPCPNCGTG 400

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R IE+GHIF  G KY+   S    G  GK   V MGSYGIG  R VAA+ E + D 
Sbjct: 401 LQVDRAIEIGHIFQLGRKYADIFSLDVLGQQGKPVRVTMGSYGIGVSRAVAALAEQTADD 460

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           KG+ WP  +AP  + ++   A   +  +    +  +L+  G  V  DD  G   G +F  
Sbjct: 461 KGLCWPREIAPADVHVV--AAGKALQTELALDVSEKLNAAGLRVLVDDRAGVSPGVKFTD 518

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++L+G P  ++ G +      +E+K R TG RE+++++E I   + R
Sbjct: 519 SELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVDEAIARLTDR 564


>gi|283457978|ref|YP_003362585.1| threonyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134000|dbj|BAI64765.1| threonyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 706

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 147/448 (32%), Gaps = 35/448 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L   +E   +AE   H+ + R             G+    P G      +   +R 
Sbjct: 275 TKDELVAYKERIAEAERRDHRRLGRELDLFSFPKNIGPGLPVIHPKGGVIKREMEDYVRT 334

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              + G   +S P +   DL+  SG    Y   M    + ++        +  +  +I+R
Sbjct: 335 RHIQEGFQYVSTPHISKEDLFYTSGHLPYYADGMFPPMELDNGHYRLKAMNCPMHNEIYR 394

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP  F++    +RDE      G+ R R     D++S+ +T E +      + 
Sbjct: 395 SRGRSYRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSY-VTKEQAPDEVRHLL 453

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    G+    +   +    GD   +FI   +  E      +             
Sbjct: 454 KFMLSLLEDFGMTDFYLELSTRDTEGDKKDKFIGTDEQWEEATAVLEQV----------- 502

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                     +       A      + +  D++    ++S    +      FG +Y    
Sbjct: 503 ---AKETGLELVPDPGGAAFYGPKISVQAKDAIGRTWQMSTVQYDFNQPSRFGLEY---- 555

Query: 299 SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               + ADG     V + S   G++     V+   + G    W   +AP ++  + +   
Sbjct: 556 ----QAADGTVQEPVMIHSAKFGSIERFLGVLTEHYAGAFPAW---LAPVQVIGVPVA-- 606

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D   +I  +L   G  V  D   ++   +   A     P  +I G +      V 
Sbjct: 607 -EAFNDYMTEIADKLRAHGVRVEVDYGSDRFTKKIRTASTEKVPFILIAGGEDAEHGAVS 665

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            + R       + ++E +        N 
Sbjct: 666 FRFRGNKQENGVPVDEAVARIVEHIRNR 693


>gi|291450340|ref|ZP_06589730.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291353289|gb|EFE80191.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 660

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/449 (15%), Positives = 142/449 (31%), Gaps = 40/449 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    E   +AE   H+ +     +     +   G+  + P G      +    R 
Sbjct: 242 SKEELKAHLEFLAEAEKRDHRKLGTELDLFSFPDELGPGLAVFHPKGGVVRKEMENYSRR 301

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G   ++ P +    L+  SG   +Y + M    + + +       +  +   IF+
Sbjct: 302 RHEDAGYEFVNTPHISKEHLFETSGHLPNYSEGMFPPIEFDGQNYRLKAMNCPMHNLIFK 361

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SYR LP   ++    +R E      G+ RSR F   D++ +  T E      + + 
Sbjct: 362 GRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDSHIY-CTKEQMPEELDSLL 420

Query: 179 VSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              L +    GL    +   +  P       E     +  E     ++      +P    
Sbjct: 421 TFVLDLLRDYGLNQFELELSTRDPESDKFIGEDAEWEEATEALRQAAEKQGLPLVPDPGG 480

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      + +  D++  + ++S   ++      FG +Y+  
Sbjct: 481 A------------------AYYGPKISVQAKDAIGRSWQMSTIQVDFQQPKRFGLEYTAA 522

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                   DG +   V +     G++    AV+   + G    W   +AP +   I I  
Sbjct: 523 --------DGSRQQPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIG- 570

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    ++  A     G  V  D   +++  +         P  +IVG + ++   V
Sbjct: 571 --DAHVSYLQEFAADAKARGLRVEVDSSSDRMQKKIRNHQKAKVPFMIIVGDEDMNAGTV 628

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             ++R       +  E+ +          
Sbjct: 629 SFRYRDGSQENGIPREDALAKLQDVVERR 657


>gi|326780460|ref|ZP_08239725.1| threonyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|326660793|gb|EGE45639.1| threonyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 658

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 147/446 (32%), Gaps = 41/446 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD     ++L L +    +   G+  + P G      +    R     
Sbjct: 246 KAHLEFLEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHI 122
            G   +  P      L+ +SG  D Y   M      +D       P +  +   IF +  
Sbjct: 305 EGYEFVYSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARG 364

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ RSR F   DA+ +  T E      ++     
Sbjct: 365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDRTLTFV 423

Query: 182 LRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           L +    GL    +   +  P     S E    A     QV   +     P P       
Sbjct: 424 LNLLRDYGLTDFYLELSTKDPEKYVGSDETWEEATETLRQVAEKQGLPLVPDPG------ 477

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +  D++    ++S   ++    F    ++      
Sbjct: 478 --------------GAAFYGPKISVQCKDAIGRTWQMSTVQLD----FNLPERF----DL 515

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG K   V +     G++    AV+   + G   +W   +AP +   I I     
Sbjct: 516 EYTGPDGSKQRPVMIHRALFGSIERFFAVLLEHYAGAFPVW---LAPVQAVGIPIG---D 569

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++  A+  K G  V  D   +++  +         P  +I G + +++  V  +
Sbjct: 570 AHIPYLQEFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFR 629

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           +R       + ++E I   +    + 
Sbjct: 630 YRDGSQENGIPVDEAIAKIAKAVEDR 655


>gi|326476791|gb|EGE00801.1| threonyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 753

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 153/481 (31%), Gaps = 68/481 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 300 KLLQEHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 355

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 356 TEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMF 414

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T          +
Sbjct: 415 GHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTDNQIMEEIEGL 473

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 474 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGADWEIDEGDG 532

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--- 294
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 533 AFYGPKIDITIS-------------------DALKREHQCATIQLDYQLPLNFKLEYMTG 573

Query: 295 ---------------------SLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVI 329
                                S P  A    +     G+   V +    IG+      ++
Sbjct: 574 ETIPKSAAPANPKAEAKPEGDSNPTQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGIL 633

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                GK   WP  ++P +I ++ + A      D  E++   L     +V  D  G  + 
Sbjct: 634 IEHFGGK---WPFWLSPRQILIVPVMAS---ANDYVEELQEILRGDKLNVDIDLSGHTMQ 687

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNN 445
            +     L  +    +VG++      V I++R     +     + LEE            
Sbjct: 688 KKIRNGQLAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLIPLEEARAKLRALRKER 747

Query: 446 R 446
           R
Sbjct: 748 R 748


>gi|116514305|ref|YP_813211.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122274963|sp|Q049U9|SYP_LACDB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116093620|gb|ABJ58773.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325126002|gb|ADY85332.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 565

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/222 (46%), Positives = 138/222 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLQLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  + 
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIA 222



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 3/179 (1%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE   D +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R
Sbjct: 389 NEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +++AV+E      G+ WP  +APF I +I +K  D++     E + A+ +K   DV +DD
Sbjct: 449 LLSAVVEQHATENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDD 506

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             E+ G +F  ADL+G P+++ VG +  +D  VE+K       + +++ ++ ++ ++  
Sbjct: 507 RNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLAVADLEDFIANEL 564


>gi|182439796|ref|YP_001827515.1| threonyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|238689023|sp|B1W3F0|SYT_STRGG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|178468312|dbj|BAG22832.1| putative threonyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 658

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 147/446 (32%), Gaps = 41/446 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD     ++L L +    +   G+  + P G      +    R     
Sbjct: 246 KAHLEFLEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHI 122
            G   +  P      L+ +SG  D Y   M      +D       P +  +   IF +  
Sbjct: 305 EGYEFVYSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARG 364

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ RSR F   DA+ +  T E      ++     
Sbjct: 365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDRTLTFV 423

Query: 182 LRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           L +    GL    +   +  P     S E    A     QV   +     P P       
Sbjct: 424 LNLLRDYGLTDFYLELSTKDPEKYVGSDETWEEATETLRQVAEKQGLPLVPDPG------ 477

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +  D++    ++S   ++    F    ++      
Sbjct: 478 --------------GAAFYGPKISVQCKDAIGRTWQMSTVQLD----FNLPERF----DL 515

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG K   V +     G++    AV+   + G   +W   +AP +   I I     
Sbjct: 516 EYTGPDGSKQRPVMIHRALFGSIERFFAVLLEHYAGAFPVW---LAPVQAVGIPIG---D 569

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++  A+  K G  V  D   +++  +         P  +I G + +++  V  +
Sbjct: 570 AHIPYLQEFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFR 629

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           +R       + ++E I   +    + 
Sbjct: 630 YRDGSQENGIPVDEAIAKIAKAVEDR 655


>gi|108799043|ref|YP_639240.1| prolyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868158|ref|YP_938110.1| prolyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126434646|ref|YP_001070337.1| prolyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|122977105|sp|Q1BAA0|SYP_MYCSS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112933|sp|A1UER2|SYP_MYCSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108769462|gb|ABG08184.1| prolyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119694247|gb|ABL91320.1| prolyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126234446|gb|ABN97846.1| prolyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 584

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/223 (39%), Positives = 131/223 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+Y+WLPLG +    +  I+R+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYTWLPLGLRVFRKIEQIVRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +  
Sbjct: 64  TAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLKDRRDNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   +QIQ K+RDE RPR G++R REF+MKD+YSFD+  +G K +Y+    +Y
Sbjct: 124 YSSYKDFPLILFQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDDGLKTAYHLHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG+  + + A SG +GG  S EF+  ++ GE      
Sbjct: 184 QRIFARLGVHYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRC 226



 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE+GHIF  G KY+   SA   G DGK   + MGSYGIG  R+VA + E  HD  G
Sbjct: 421 SARGIEIGHIFQLGRKYTEAFSADVLGEDGKPVRLTMGSYGIGVSRLVAVIAEQQHDELG 480

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP +VAPF + ++ I   D   R    ++   L ++G +V  DD     G +F  A+L
Sbjct: 481 LRWPAAVAPFDVHVV-IANKDDGARTGATELAGELDRLGLEVLLDDRKSSPGVKFKDAEL 539

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           LG P  V+VG +   D  VE++ R +G + ++ +++     
Sbjct: 540 LGVPWIVVVG-RGWGDGVVELRDRFSGEKREIGVDDAATEI 579


>gi|302829308|ref|XP_002946221.1| hypothetical protein VOLCADRAFT_102823 [Volvox carteri f.
           nagariensis]
 gi|300269036|gb|EFJ53216.1| hypothetical protein VOLCADRAFT_102823 [Volvox carteri f.
           nagariensis]
          Length = 691

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 143/437 (32%), Gaps = 61/437 (13%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +   ++E    A+   H+++         H  S G   +LP G +  + + + IR
Sbjct: 277 KLLKEYQHRIEE----AKKRDHRVLGVQQELFFFHPLSPGSCFFLPHGARIYNTLMSFIR 332

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+  +    E+  P + + DLW  SG  D Y + M    +         P +      +F
Sbjct: 333 EKYWKYEYEEVITPNIYNFDLWRTSGHADHYRENMFAF-EIEKAEYGLKPMNCPGHCLMF 391

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP       +  R+E      G+ R                          
Sbjct: 392 ANRTRSYRELPLRLADFGVLHRNEFSGALQGLTRV------------------MSEVQGF 433

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   GL    M   + P G     E    A+T  T+   S        P +  
Sbjct: 434 LKLLGEVYDVFGLDY-TMALSTRPEGYLGDIELWNRAETALTEALNSTGREWVLNPGDG- 491

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  ++D+L    + +   ++      FG +Y+  
Sbjct: 492 -------------------AFYGPKIDITVYDALRRKFQCATVQLDFQLPIRFGLEYASE 532

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                      +  V +    +G++  + A++     GK   WP  + P ++ ++ I  +
Sbjct: 533 SGTL-------ERPVIVHRAVLGSVERMFAILTEHFAGK---WPFWLNPRQVMVVPISEN 582

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                     +   L   G  V  D    ++  +   A L  +   ++VG    ++  V 
Sbjct: 583 SS---QYAFDVRRELRAAGLHVDVDASDRKMQKKVREAQLAQYNYILVVGEAEKAEQTVN 639

Query: 418 IKHRLTGIREDMSLEEV 434
           ++ R   +     LE+V
Sbjct: 640 VRTRDNVVHGMFKLEDV 656


>gi|239978444|ref|ZP_04700968.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 655

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/449 (15%), Positives = 142/449 (31%), Gaps = 40/449 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    E   +AE   H+ +     +     +   G+  + P G      +    R 
Sbjct: 237 SKEELKAHLEFLAEAEKRDHRKLGTELDLFSFPDELGPGLAVFHPKGGVVRKEMENYSRR 296

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G   ++ P +    L+  SG   +Y + M    + + +       +  +   IF+
Sbjct: 297 RHEDAGYEFVNTPHISKEHLFETSGHLPNYSEGMFPPIEFDGQNYRLKAMNCPMHNLIFK 356

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SYR LP   ++    +R E      G+ RSR F   D++ +  T E      + + 
Sbjct: 357 GRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDSHIY-CTKEQMPEELDSLL 415

Query: 179 VSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              L +    GL    +   +  P       E     +  E     ++      +P    
Sbjct: 416 TFVLDLLRDYGLNQFELELSTRDPESDKFIGEDAEWEEATEALRQAAEKQGLPLVPDPGG 475

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      + +  D++  + ++S   ++      FG +Y+  
Sbjct: 476 A------------------AYYGPKISVQAKDAIGRSWQMSTIQVDFQQPKRFGLEYTAA 517

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                   DG +   V +     G++    AV+   + G    W   +AP +   I I  
Sbjct: 518 --------DGSRQQPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIG- 565

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    ++  A     G  V  D   +++  +         P  +IVG + ++   V
Sbjct: 566 --DAHVSYLQEFAADAKARGLRVEVDSSSDRMQKKIRNHQKAKVPFMIIVGDEDMNAGTV 623

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             ++R       +  E+ +          
Sbjct: 624 SFRYRDGSQENGIPREDALAKLQDVVERR 652


>gi|37522094|ref|NP_925471.1| prolyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|81834313|sp|Q7NHL0|SYP_GLOVI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|35213093|dbj|BAC90466.1| prolyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 589

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 134/231 (58%), Gaps = 7/231 (3%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIRE 59
           R S  F   L+E P +A   SHKL+LR G I   +   G+Y++ PL Q+ L  V  I+RE
Sbjct: 3   RLSSSFFFTLREAPAEAVAVSHKLLLRAGFIRPLAGTAGLYAYGPLMQRVLQKVGRIVRE 62

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLAD---RNDKAMIYGPTHEEVM 114
           E + TGA E     LQ A++W ESGR+  Y ++  M  L D      +    GPTHEE +
Sbjct: 63  EMDATGAQEALFCQLQPAEIWKESGRWTVYTQDGTMFTLKDGQGEQAREYGLGPTHEEAV 122

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            D  R+ + SY+ LPF  YQ+Q KFR+E RPRFG+MR REF+MKD YSF  TPE    +Y
Sbjct: 123 CDFVRASLNSYKQLPFHLYQVQTKFRNEKRPRFGLMRGREFIMKDGYSFHATPESLDETY 182

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             M+ +Y  +F R GL    + A+SG IGG  SHEF+ L D GE  +    
Sbjct: 183 RAMYRAYTNMFRRCGLDFRAVEADSGAIGGSGSHEFMALCDIGEDTILYCD 233



 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/215 (33%), Positives = 101/215 (46%), Gaps = 1/215 (0%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           DF       D   + +            A              PE    SARG+E+GHIF
Sbjct: 367 DFSTGCNQDDVQCVWANWGENGLVLPEVADLDTAQAGDHCHLAPEATLQSARGVELGHIF 426

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GTKYS PM   F    G+     MG YG+G  R+ AAV+E SHD  GI+WP ++AP++
Sbjct: 427 KLGTKYSRPMQVLFADEAGELQPALMGCYGVGVSRLPAAVVEQSHDNDGILWPIAIAPYQ 486

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + L+      +  R A E++Y  L+  G D   DD  E+ G +F  ADL+G PL+V +G 
Sbjct: 487 VVLVPANVAVEAQRQAAEELYRSLTAAGIDTLLDDRPERAGVKFKDADLIGIPLRVTLG- 545

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + +    VEIK R  G  E + L E +        
Sbjct: 546 RDLEAGLVEIKVRGGGAAEKVPLAEALAQIKGLIE 580


>gi|206895814|ref|YP_002247094.1| prolyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|226699133|sp|B5Y8J7|SYP_COPPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206738431|gb|ACI17509.1| prolyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 558

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/227 (46%), Positives = 150/227 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F   L+E+P+DAE  SHKL++R  MI Q + G+Y++LP G K L  +  ++REE
Sbjct: 1   MRASKFFYKTLREDPKDAEATSHKLLIRASMIKQIASGVYAFLPFGHKVLKKIETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  EM++  +  A++W ++GR++ YG +M++  DR ++    GPTHEE +T +   
Sbjct: 61  MDRIGGQEMTMSIMMPAEMWKKTGRWELYGDDMIKFKDRKEQDFCLGPTHEEQITTLAGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  K +Y+++  +
Sbjct: 121 LISSYKQLPQLVYQIQTKFRDEPRPRFGLIRLREFVMKDAYSFHDSEESLKTTYDQVLNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  R+GL    + A+ G IGG LSHEFIV A+ GE+ VF     
Sbjct: 181 YKRILERIGLNYEVVAADPGQIGGTLSHEFIVPAEVGESTVFKCDSC 227



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 6/223 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E  +   K            +  D   +   V +             E        + 
Sbjct: 335 INEITILKDKSLESLDWGVIGANERDYHIVGVEVSELPFHEIVDLAEVAEGDLCPQCGSP 394

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             S  G+EVGHIF  GT+YS P+ A +   DG+     MG YGIG  R+V+AVIE  HD 
Sbjct: 395 LRSFTGLEVGHIFRLGTRYSEPLEAFYHSEDGERKPFIMGCYGIGVTRLVSAVIEQHHDD 454

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SVAP+ + +I I   +       +++   LS  G DVF DD  E+ G +F  A
Sbjct: 455 FGIVWPWSVAPYHVVIIPIGDVEAQV----QELENTLSSAGLDVFVDDRDERPGVKFVDA 510

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           DL+GFP++++V +K   + KVEIK R TG    +  E+V++  
Sbjct: 511 DLIGFPVRLVVNAK--KEGKVEIKFRKTGETLLVGQEDVLDTV 551


>gi|227892604|ref|ZP_04010409.1| prolyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227865589|gb|EEJ73010.1| prolyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 565

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/225 (46%), Positives = 141/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVSVHPVIADSGTMGGKNSTEFQAPAAVGEDTIAMNE 225



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +     A     NE   D 
Sbjct: 335 PVNADWADKIIADETVKNLYNVVVGAGETDYQFENANLDRDFKVDEFADLRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 G+ WP  +APF I ++ +K +     +  EK+  + S    DV +DD  E+ G 
Sbjct: 455 QHLTEHGVAWPKEIAPFSIHIVQMKMNKDDQTELAEKLEKKFSDK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ VG K  +D  VE+K        +MS++E+  + +   
Sbjct: 514 KFADADLVGAPIRITVGKK-AADGIVEVKRPTDEKATEMSIDELDKFVNQEL 564


>gi|104774217|ref|YP_619197.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|122983932|sp|Q1G9P3|SYP_LACDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|103423298|emb|CAI98139.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 565

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/222 (46%), Positives = 138/222 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLQLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  + 
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIA 222



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 3/179 (1%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE   D +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R
Sbjct: 389 NEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +++AV+E      G+ WP  +APF I +I +K  D++     E + A+ +K   DV +DD
Sbjct: 449 LLSAVVEQHATENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDD 506

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             E+ G +F  ADL+G P+++ VG +  +D  VE+K       + +++ ++ ++ ++  
Sbjct: 507 RNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLAVADLEDFIANEL 564


>gi|300812560|ref|ZP_07092977.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496433|gb|EFK31538.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 565

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/222 (46%), Positives = 138/222 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  + 
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIA 222



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 3/179 (1%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE   D +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R
Sbjct: 389 NEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +++AV+E      G+ WP  + PF I +I +K  D++     E + A+ +K   DV +DD
Sbjct: 449 LLSAVVEQHATENGVAWPKEITPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDD 506

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             E+ G +F  ADL+G P+++ VG +  +D  VE+K       + +++ ++ ++ +   
Sbjct: 507 RNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLAVTDLEDFIASEL 564


>gi|307747462|gb|ADN90732.1| Prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931738|gb|EFV10693.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 568

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G I Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFIEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 241 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 282



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    +    K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 391 EGDCCAKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE+SHD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 451 LAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 511 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 567


>gi|227524393|ref|ZP_03954442.1| prolyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
 gi|227088624|gb|EEI23936.1| prolyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
          Length = 569

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLILYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYRAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S +   F 
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSDESDYFA 231



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 1/180 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + K    RGIE+GHIF  GT+YS  ++A     +G+   V MGSYGIG  R+
Sbjct: 389 EGELSPDGKGKLKFTRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMGSYGIGISRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A+ E + D  G++WP +VAP+ + +I I    +V  +   +I  +L++ G +V  DD 
Sbjct: 449 LSAISEQNADENGLVWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTENGIEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DLLG PL++ VG K   +  VEIK R  G   +  +EE+ +       N
Sbjct: 509 RERPGVKFADSDLLGIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEELSDTVKILLKN 567


>gi|291443408|ref|ZP_06582798.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291346355|gb|EFE73259.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 658

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 147/446 (32%), Gaps = 41/446 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD     ++L L +    +   G+  + P G      +    R     
Sbjct: 246 KAHLEFLEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHI 122
            G   +  P      L+ +SG  D Y   M      +D       P +  +   IF +  
Sbjct: 305 EGYEFVYSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARG 364

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ RSR F   DA+ +  T E      ++     
Sbjct: 365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDRTLTFV 423

Query: 182 LRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           L +    GL    +   +  P     S E    A     QV   +     P P       
Sbjct: 424 LNLLRDYGLTDFYLELSTKDPEKYVGSDETWEEATATLQQVAEKQGLPLVPDPG------ 477

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +  D++    ++S   ++    F    ++      
Sbjct: 478 --------------GAAFYGPKISVQCKDAIGRTWQMSTVQLD----FNLPERF----DL 515

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG K   V +     G++    AV+   + G   +W   +AP +   I I     
Sbjct: 516 EYTGPDGSKQRPVMIHRALFGSIERFFAVLLEHYAGAFPVW---LAPVQAVGIPIG---D 569

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++  A+  K G  V  D   +++  +         P  +I G + +++  V  +
Sbjct: 570 AHIPYLQEFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFR 629

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           +R       + ++E I   +    + 
Sbjct: 630 YRDGSQENGIPVDEAIAKIAKAVEDR 655


>gi|239621659|ref|ZP_04664690.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515534|gb|EEQ55401.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 607

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 143/234 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE
Sbjct: 9   LRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 69  INGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +
Sbjct: 129 MYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 189 YERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 242



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 441 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 500

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 501 WPSVIAPAAVHVVA-TGKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 559

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           G PL  +VG  +V+D  +E++ R    +
Sbjct: 560 GVPLVAVVGRDYVNDGTIELRDRNGENK 587


>gi|325685949|gb|EGD28012.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 565

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/222 (46%), Positives = 138/222 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDNEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  + 
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIA 222



 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 3/232 (1%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  V        + +     + D      ++   +     A   V NE   D 
Sbjct: 336 PVNADWADEIVADETVKGLYNVVVGAGESDAQFINANLDRDFKVDRFADLRVANEGEPDP 395

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E
Sbjct: 396 VDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTRLLSAVVE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 G+ WP  +APF I +I +K  D++     E + A+ +K   DV +DD  E+ G 
Sbjct: 456 QYATENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDDRNERPGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +F  ADL+G P+++ VG +  +D  VE+K       + +++ ++ ++ ++  
Sbjct: 514 KFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLAVADLEDFIANEL 564


>gi|326771743|ref|ZP_08231028.1| proline--tRNA ligase [Actinomyces viscosus C505]
 gi|326637876|gb|EGE38777.1| proline--tRNA ligase [Actinomyces viscosus C505]
          Length = 610

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 136/233 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAVVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            RIF RLGL  + + A +G +GG  S EF+   + GE     S         +
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLHPCEIGEDTFVRSSSGYAANAEA 236



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIE+GHIF  G KYS  +  T    +GK   V MGSYGIG  RV+AA+ E++HD 
Sbjct: 435 LHLARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMGSYGIGVSRVMAALAEANHDD 494

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           KG+ WP  +AP+ + ++     DQ   D  E+I + L   G +V +DD  +   G +FA 
Sbjct: 495 KGLTWPAQIAPYHVQVLA-TGKDQAVFDVAEQIASSLDADGVEVLYDDRRKVSAGVKFAD 553

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           A+LLG P  ++VG     +  VEI+ R TG R  +  +      S
Sbjct: 554 AELLGLPYTLVVGRDLAKEGTVEIRDRRTGERRSVPADAAAAELS 598


>gi|239939977|ref|ZP_04691914.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239986461|ref|ZP_04707125.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
          Length = 653

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 147/446 (32%), Gaps = 41/446 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD     ++L L +    +   G+  + P G      +    R     
Sbjct: 241 KAHLEFLEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEE 299

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHI 122
            G   +  P      L+ +SG  D Y   M      +D       P +  +   IF +  
Sbjct: 300 EGYEFVYSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARG 359

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ RSR F   DA+ +  T E      ++     
Sbjct: 360 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDRTLTFV 418

Query: 182 LRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           L +    GL    +   +  P     S E    A     QV   +     P P       
Sbjct: 419 LNLLRDYGLTDFYLELSTKDPEKYVGSDETWEEATATLQQVAEKQGLPLVPDPG------ 472

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +  D++    ++S   ++    F    ++      
Sbjct: 473 --------------GAAFYGPKISVQCKDAIGRTWQMSTVQLD----FNLPERF----DL 510

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG K   V +     G++    AV+   + G   +W   +AP +   I I     
Sbjct: 511 EYTGPDGSKQRPVMIHRALFGSIERFFAVLLEHYAGAFPVW---LAPVQAVGIPIG---D 564

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++  A+  K G  V  D   +++  +         P  +I G + +++  V  +
Sbjct: 565 AHIPYLQEFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFR 624

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           +R       + ++E I   +    + 
Sbjct: 625 YRDGSQENGIPVDEAIAKIAKAVEDR 650


>gi|329947841|ref|ZP_08294773.1| proline--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328523465|gb|EGF50563.1| proline--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 619

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 138/240 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   I + + G+Y+WLPLG + L  + AI+R+  
Sbjct: 12  RLSTSFIRTLREDPADAEVASHRLLVRACYIRRAAPGVYTWLPLGLRTLRKIEAIVRQGM 71

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  ++ +  +GR++ YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 72  DAMGGQEVHFPALLPSEPYQATGRWNDYGPTLFKLHDRKDGDYLLAPTHEEMFTLAVKDL 131

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 132 YSSYKDLPAIVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDAY 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  + + A +G +GG  S EF+   + GE     S         +  T   D
Sbjct: 192 ERIFARLGLDYVIVNAMAGAMGGSHSEEFLYPCEIGEDTFVRSSGGYAANAEAVTTVVPD 251



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 2/156 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIE+GHIF  G KYS  +  T    +GK   V MGSYGIG  RV+AA+ E++HD 
Sbjct: 443 LHLARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMGSYGIGVSRVMAALAEANHDD 502

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           KG+ WP  +AP+ + ++     DQ   D  E++ + L   G +V +DD  +   G +FA 
Sbjct: 503 KGLSWPVQIAPYHVQVLA-TGKDQAVFDVAEQVASALDADGVEVLYDDRRKVSAGVKFAD 561

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           A+LLG P  ++VG     +  VEI+ R TG R  + 
Sbjct: 562 AELLGLPYTLVVGRDLAKEGTVEIRDRRTGDRRSVP 597


>gi|213964749|ref|ZP_03392949.1| prolyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213952942|gb|EEB64324.1| prolyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 590

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 140/223 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG K L NV  ++REE 
Sbjct: 4   RMSQLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGVYSWLPLGLKVLRNVEKVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E++ P L   + +  + R+  YG E+ RL DR     + GPTHEE+     +  
Sbjct: 64  EGIGAQELAFPALLPREPYEATNRWTEYGPELFRLKDRKGADYLLGPTHEEMFALAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T +QIQ K+RDE RPR G++R REF+MKD+YSFD+  EG ++SY +   +Y
Sbjct: 124 FSSYKDFPTTLFQIQTKYRDEARPRAGILRGREFVMKDSYSFDMDDEGLENSYQQHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG+K     A SG +GG  S EF+ +++ GE     S
Sbjct: 184 QRIFDRLGIKYEICHATSGAMGGSASEEFLAVSENGEDSFVVS 226



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 3/176 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RGIE+GHIF  G KY+          +GK     MGSYGIG  R+VA + 
Sbjct: 416 PEGHGTLKIERGIEIGHIFQLGRKYTNAFEIDILDVNGKRARPTMGSYGIGVSRLVAVLA 475

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E   D KG+ WP + AP+K+ +  +   +    +A E++   LS+ G +V +DD  +   
Sbjct: 476 EQQLDEKGLKWPVAAAPYKVHI-AVAGKNAEAAEAAEQLAEDLSQQGIEVLFDDRPKVSP 534

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F  A+LLG P  VI G +  +D KVE+++RLT   ++++ + +  + +   S 
Sbjct: 535 GVKFKDAELLGMPFVVIFG-RGYADGKVELRNRLTNETDEVAADGIAAHVAELVSK 589


>gi|15611183|ref|NP_222834.1| threonyl-tRNA synthetase [Helicobacter pylori J99]
 gi|8928389|sp|Q9ZMV3|SYT_HELPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4154621|gb|AAD05692.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 612

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 158/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFGFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +  +  
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEY-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|317008795|gb|ADU79375.1| threonyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 612

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 157/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSTILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFGFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +  +  
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEY-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +   A+    P+ +++G++ V    + I+ R   
Sbjct: 530 AFKLKEALKKHDIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEVESEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|227510249|ref|ZP_03940298.1| prolyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189901|gb|EEI69968.1| prolyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 569

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYRAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S +   F 
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSDESDYFA 231



 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 1/180 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + K    RGIE+GHIF  GT+YS  ++A     +G+   V MGSYGIG  R+
Sbjct: 389 EGELSPDGKGKLKFTRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMGSYGIGISRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A+ E + D  G++WP +VAP+ + +I I    +V  +   +I  +L++ G +V  DD 
Sbjct: 449 LSAISEQNADENGLVWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTENGIEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DLLG PL++ VG K   +  VEIK R  G   +  +EE+ +       N
Sbjct: 509 KERPGVKFADSDLLGIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEELSDTVKILLKN 567


>gi|320535781|ref|ZP_08035862.1| prolyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320147329|gb|EFW38864.1| prolyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 576

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/231 (41%), Positives = 142/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P +A IASH+L+LR GMI +   G++++LPLG ++   +  IIREE
Sbjct: 1   MKMSQMFMPTLREVPSEAVIASHQLLLRAGMIRKIGNGLFAYLPLGLRSFHKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E     +   +LW ESGR+D+ G E+LR+ +R ++ ++  PT EE  T + R 
Sbjct: 61  LDAIGCLECKPSVVIPGELWQESGRWDAMGDELLRMKNRLNQDLVVSPTAEEAFTALLRF 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+  P T YQI  K+RDE+RPR+G+MR+REF M DAYSF  T E     Y     +
Sbjct: 121 ELSSYKQFPLTLYQINTKYRDEIRPRYGLMRAREFTMMDAYSFHTTQESLDEVYEHFSQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF R GL  IP+RA+SG +GG  S EF+V ++ G+  +          
Sbjct: 181 YRKIFARCGLSVIPVRADSGAMGGSGSEEFMVESEVGDDTLILCPKCGYAA 231



 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 3/174 (1%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                  S +G E+GHIF  G KY+  M+ TF   +GK  Y  MG YGIG  R +A+VIE
Sbjct: 401 HCGAPFYSKKGNELGHIFKLGFKYTKSMNMTFLDENGKQQYPTMGCYGIGVDRTLASVIE 460

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             HD  GI+WP +VAP+   ++ IK  +   ++A + +Y  L   G +V  DD  E+ G 
Sbjct: 461 EHHDEDGIVWPLTVAPYHAVIVPIKY-EGKMKEAADALYTELQTAGVEVLLDDRHERPGV 519

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F   DL+G P++++VG K +   ++E K R     + ++ +EV  +       
Sbjct: 520 KFKDMDLIGIPIRLVVGEKNLP--QIECKLRTEKESKLIAQKEVCAFVQKLVQE 571


>gi|320105902|ref|YP_004181492.1| prolyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319924423|gb|ADV81498.1| prolyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 613

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 107/230 (46%), Positives = 144/230 (62%), Gaps = 1/230 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DA +ASH+++LR G + Q   G+YS+L L  ++++ + AI+REE 
Sbjct: 30  RWSKLFIPTLREAPADAVVASHQILLRAGYVRQLGAGLYSYLFLATRSINKIVAIVREEM 89

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  EM +P L  A++W ESGR+   G  M RL DR    +  G THEEVMT I RS 
Sbjct: 90  DRIG-QEMYLPALNPAEVWQESGRWTGMGDNMFRLKDRKGADLCLGMTHEEVMTSIARSE 148

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SY+ LP  +YQIQ KFRDE RP+ G++R R+F MKD+YSFDL  EG   SY     +Y
Sbjct: 149 IRSYKQLPQIWYQIQTKFRDEPRPKSGLLRVRQFTMKDSYSFDLNEEGLDVSYKLHDEAY 208

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             IF R GL  + + A+SG +GG  S EF+V  + GE  +  S D     
Sbjct: 209 RCIFTRCGLSFVAVEADSGAMGGSQSQEFMVYTEAGEDLIASSPDGQYAA 258



 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/189 (33%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE   D +        + +E+GHIF  G KY+  M A     +GK+    MG YGIG  R
Sbjct: 426 NEGEPDPITGQPLRLGKAVEIGHIFKLGYKYTESMGARVLDQNGKETMPIMGCYGIGIER 485

Query: 324 VVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           ++ A +E S    G+          P S+APF++ +   K  D    +A E I   L   
Sbjct: 486 ILTAAMERSAASMGLSDRGDIRYALPASIAPFQVIVTVTKQSDATLAEAGETIAKALDSA 545

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  +  G +F  ADL+G P +V VG K V D  VE+  RLTG   + ++ EV+
Sbjct: 546 GFDVLLDDRDQSAGVKFKDADLIGVPYRVNVGKKLV-DGLVELVDRLTGNTIECAVNEVV 604

Query: 436 NYASHRFSN 444
                    
Sbjct: 605 PQLQAAIKQ 613


>gi|301168478|emb|CBW28068.1| proline tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 573

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 103/227 (45%), Positives = 147/227 (64%), Gaps = 2/227 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F    +E P DAEI SH+LM+R G+IH+   G+YS+LP G +++  V  IIREE
Sbjct: 1   MKLSTGFWQTYKEVPADAEIPSHQLMVRAGLIHKMGSGLYSYLPFGYRSIRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +  +   +LW ESGR+D+ G +ML++ D+  + +   PT+EE +TDIFR 
Sbjct: 61  LDKAGCHEILMSMVTPGELWQESGRWDAMGDQMLKVKDKGGRDLCLSPTNEEAVTDIFRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+NLP T YQI  KFRDELRPRFG+MR REF MKD YSF +  +     Y+++F +
Sbjct: 121 TIKSYKNLPVTLYQINTKFRDELRPRFGLMRGREFTMKDGYSFHIDKDSLDEVYDRIFKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGETQVFCSK 225
           Y  IF R GL+   + A++G +      +HEF V+A+TGE +V    
Sbjct: 181 YEAIFTRAGLEFSAVEADAGAMADSDQKTHEFQVIANTGEDEVIYCN 227



 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 2/167 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVGHIF  G KY+  M  T   ++GK     MG YGIG  RVVAA +E  HD KG
Sbjct: 407 IRRGIEVGHIFQLGDKYTKAMGTTVLDSNGKAMNPLMGCYGIGVTRVVAAAVEQHHDDKG 466

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP ++AP+ +    I       ++  EKIY  + +   +V +DD     G +F  ADL
Sbjct: 467 IVWPMALAPYHVYFAEIT-KSAENKELAEKIYNEILEANIEVVFDDRKAGPGFKFKDADL 525

Query: 398 LGFPLQVIVGSKF-VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG PLQ++ G +    D  +EI+ R TG    +  E+V++       
Sbjct: 526 LGLPLQLVFGERDFKKDGMLEIRIRKTGESLKVKPEDVVSKLQELIK 572


>gi|221480967|gb|EEE19381.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
 gi|221501688|gb|EEE27452.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 844

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/475 (18%), Positives = 151/475 (31%), Gaps = 66/475 (13%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +    L L        S G   WLP G K  + +   +REE    G  E+ 
Sbjct: 390 EEAKKRDHRVLGQNLHLF-FFDTNVSPGSCFWLPDGAKVYNKLCMFMREEYRFRGFQEVI 448

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S DLW  SG Y +Y + M  L D   K     P +      +F+    SYR LP 
Sbjct: 449 SPNIFSCDLWKVSGHYQNYKENMY-LFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLPL 507

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +  K            ++ + G
Sbjct: 508 RLADFGVLHRNELSGSLTGLTRVRRFQQDDAHIF-CRLDQVKEEVADALNFLFFVYDQFG 566

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P               GE  V+ S +        E      +   +   
Sbjct: 567 FSF-ELFLSTRP-----------KKALGERAVWDSAEAALKAALEETGRPWQLNPGDG-- 612

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-------------- 295
                  A      + +L+D+L    +     ++      F  +Y               
Sbjct: 613 -------AFYGPKIDIRLWDALKRPHQCGTIQLDFQLPIRFNLQYRTQDEAVAGARDKAK 665

Query: 296 -------------------LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                                         G    V +    +G++  + AV+     GK
Sbjct: 666 EDKETGEKRTDSEHEQKEEEAFGVELPLRPGMARPVIIHRAILGSIERMCAVVIEHTGGK 725

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              W   ++P +  ++ I        D    +   L   G +V  D     +  +   A 
Sbjct: 726 LPFW---LSPKQCIVLPI---SDKVNDYAASVRDVLHSCGYEVGLDVSNNTVNKKIREAQ 779

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVIN-YASHRFSNNRPVL 449
           L  +   ++VG K  +D  V ++ R     + + S+E+++  +      N+R  L
Sbjct: 780 LQQWNYLLVVGEKERADKTVTVRDRADPEHQKVLSMEDLLTLFEKQGMPNSRKTL 834


>gi|326773248|ref|ZP_08232531.1| threonine--tRNA ligase [Actinomyces viscosus C505]
 gi|326636478|gb|EGE37381.1| threonine--tRNA ligase [Actinomyces viscosus C505]
          Length = 683

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/454 (15%), Positives = 141/454 (31%), Gaps = 44/454 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +   + +     G
Sbjct: 248 YQTRLAEAAKRDHRKLGAELDLYS-FPEEIGPGLVVFHPKGAMLRHQIEQYVVDRHLDYG 306

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRN----------DKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M      D             +       +  +
Sbjct: 307 FDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLADEERDAEGNITKAGQEYYLKAMNCPM 366

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  TPE +  
Sbjct: 367 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPEQAGE 425

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                   +L I    GL    +   +    G             +   F   D      
Sbjct: 426 EIRAQIDFFLSILKAFGLTDFYLELSTRDEDG------------AKKDKFIGSDADWTAA 473

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                D  D   L  + +      A      + ++ D++    ++S    +         
Sbjct: 474 TQALQDACDASGLEVVPD--PGGAAFYGPKVSVQVKDAIGRTWQMSTIQYDFNQPER--- 528

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG     + + S  +G++     V+   + G    W   ++P ++ L
Sbjct: 529 -----FDLEYTAADGTHQRPIMIHSAKLGSVERFIGVLTEHYAGAFPAW---LSPVQVRL 580

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +    +      + + A+L   G  V  D   ++ G +         P  +I G +  
Sbjct: 581 IPVA---EAFDAYVDDVAAQLRAQGVRVEVDHSDDRFGKKIRNTSKDKIPFTLIAGGEDA 637

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               V  + R       + ++E + +        
Sbjct: 638 EAGAVSFRFRDGQQTNGVPVKEAVAHIVSVIDAR 671


>gi|301767961|ref|XP_002919352.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 718

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 156/449 (34%), Gaps = 59/449 (13%)

Query: 20  IASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           +  H+ + +       H+ S G   +LP G +  + + A IR E  R G  E+  PTL S
Sbjct: 299 LRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNTLVAFIRAEYTRRGFSEVKTPTLFS 358

Query: 77  ADLWVESGRYDSYGKEMLRL----ADR-----NDKAM-------IYGPTHEEVMTDIFRS 120
           A LW  SG ++ Y ++M  L    +DR     +D             P +      +F  
Sbjct: 359 AKLWELSGHWEHYQEDMFTLQPPGSDRLASSPSDHPTSHPTDTLALKPMNCPAHCLMFAH 418

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP          R E      G+ R R F   DA+ F   P+  +        
Sbjct: 419 RPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEAEIRSCLD 477

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG     +   + P G                         D          
Sbjct: 478 FLRSVYAVLGFSFR-LALSTRPSG-----------------FLGEPCVWDQAEQVLQRAL 519

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    DVH   L D+L    +     ++    F    ++     
Sbjct: 520 EEFGEPWDLNPGDGAFYGPKIDVH---LRDALGRPHQCGTIQLD----FQLPLRF----G 568

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I +    
Sbjct: 569 LQYKGQAGVPERPVLIHRAVLGSVERMLGVLAESCGGK---WPLWLSPFQVVVIPVGTEQ 625

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   +   ++  RL   G     D D+G  +  +   A L  +  Q +VG K  S   V 
Sbjct: 626 E---EYAREVQQRLQAAGLVCDLDADLGLTLSRRVRRAQLTHYNFQFVVGQKEQSKRTVN 682

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I+ R      +  L E +        N R
Sbjct: 683 IRTRDNHRLGERDLTEAVQRLLE-LQNTR 710


>gi|281352894|gb|EFB28478.1| hypothetical protein PANDA_008019 [Ailuropoda melanoleuca]
          Length = 718

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 156/449 (34%), Gaps = 59/449 (13%)

Query: 20  IASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           +  H+ + +       H+ S G   +LP G +  + + A IR E  R G  E+  PTL S
Sbjct: 299 LRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNTLVAFIRAEYTRRGFSEVKTPTLFS 358

Query: 77  ADLWVESGRYDSYGKEMLRL----ADR-----NDKAM-------IYGPTHEEVMTDIFRS 120
           A LW  SG ++ Y ++M  L    +DR     +D             P +      +F  
Sbjct: 359 AKLWELSGHWEHYQEDMFTLQPPGSDRLASSPSDHPTSHPTDTLALKPMNCPAHCLMFAH 418

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP          R E      G+ R R F   DA+ F   P+  +        
Sbjct: 419 RPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEAEIRSCLD 477

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG     +   + P G                         D          
Sbjct: 478 FLRSVYAVLGFSFR-LALSTRPSG-----------------FLGEPCVWDQAEQVLQRAL 519

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    DVH   L D+L    +     ++    F    ++     
Sbjct: 520 EEFGEPWDLNPGDGAFYGPKIDVH---LRDALGRPHQCGTIQLD----FQLPLRF----G 568

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I +    
Sbjct: 569 LQYKGQAGVPERPVLIHRAVLGSVERMLGVLAESCGGK---WPLWLSPFQVVVIPVGTEQ 625

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   +   ++  RL   G     D D+G  +  +   A L  +  Q +VG K  S   V 
Sbjct: 626 E---EYAREVQQRLQAAGLVCDLDADLGLTLSRRVRRAQLTHYNFQFVVGQKEQSKRTVN 682

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I+ R      +  L E +        N R
Sbjct: 683 IRTRDNHRLGERDLTEAVQRLLE-LQNTR 710


>gi|116492650|ref|YP_804385.1| prolyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
 gi|122265886|sp|Q03FS9|SYP_PEDPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116102800|gb|ABJ67943.1| Prolyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
          Length = 571

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 101/231 (43%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +  ++E P DAE+ SHK+MLR G I Q S G+Y++LPL  K +  +  I+REE
Sbjct: 1   MKQSKILISTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPLAYKVISKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MEAIDAVEMLTPAVLPAELWKQSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ+K+RDE RPR+G++R REFLMKDAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLSLYQIQMKYRDEDRPRYGLLRGREFLMKDAYSFHADEETLDQSFRDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R GL    +  ++G +GG  S EF  +A  GE  +  S++     
Sbjct: 181 YQNIFRRCGLNFREIVGDAGAMGGRDSKEFSAIASIGEDTIAYSEESDYAA 231



 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 3/238 (1%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            VL +  E     +  +++  + S     +D   L ++  +        +D+   +  + 
Sbjct: 335 PVLENKPENLKIVADKYIEQMVNSVVGANEDGFHLKNVNVERDFTVDEYADIRTVREGEL 394

Query: 271 LPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            P+ K      +GIE+GHIF  GTKYS  + A     +G+   V MG YGIG  R+++AV
Sbjct: 395 APDGKGALKFTKGIEIGHIFKIGTKYSEALDAKVLDENGRAIPVIMGCYGIGVSRLLSAV 454

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E   D  G++WP ++AP+ + +I + A +    +  ++I   L+K G DV  DD  E+ 
Sbjct: 455 SEQQSDENGLVWPKNIAPYDVHVIPVNAKNAEQMEIADQINGELTKAGYDVLVDDRKERA 514

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G +FA +DL+G PL+V +G K  S+  VE+K R TG   ++ + E+ N      +  +
Sbjct: 515 GVKFADSDLIGIPLRVTIGKK-ASEGIVEVKLRKTGEAVEVKVAELNNTVEILLNQAQ 571


>gi|311739686|ref|ZP_07713521.1| proline--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305502|gb|EFQ81570.1| proline--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 589

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++R+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRTLRKIEDVVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  M+ GPTHEE+     +  
Sbjct: 64  DAIGGQEMLFPALLPREPYEKTNRWVEYGDNLFRLKDRKNADMLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYGRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             IF+RL +     +A SG +GG  S EF+ +++ GE     S
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSEVGEDTFVRS 226



 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 4/180 (2%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              RGIE+GHIF  G KY+          +GK     MGSYGIG  R+
Sbjct: 412 EGDLAPENHGTLTLERGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSYGIGITRM 471

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A + E  HD KG+ WP +VAP+++ +  +   D    +A +K+   LS  G +V +DD 
Sbjct: 472 LAVLAEQRHDDKGLNWPVAVAPYQVHV-AVANKDAAAMEAGDKLVEELSAKGLEVLFDDR 530

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +   G +F  A+LLG P   I+G +   + K+E++ R  G   ++  E++++       
Sbjct: 531 PKVSPGVKFKDAELLGMPFVAILG-RAFKEGKIELRIRG-GETLEVPAEDIVDKILELVR 588


>gi|227495497|ref|ZP_03925813.1| threonine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831044|gb|EEH63427.1| threonine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 665

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 144/460 (31%), Gaps = 58/460 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +    R+   + G
Sbjct: 243 YLHRLSEAEKRDHRKLGTELDLFS-FPDEIGSGLACFHPKGGIIRMEMEEYSRKRHVQAG 301

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------------AMIYGPTHEE 112
              +  P +    L+ +SG    Y   M      +++                  P +  
Sbjct: 302 YDFVYSPHITKGALFEKSGHLSWYKDGMYPALSIDEERNPETGEITKAGQDYYLKPMNCP 361

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   IF S  +SYR LP   ++    +R E      G+ R R F   DA+ +  T E  K
Sbjct: 362 MHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLARGRGFTQDDAHIY-CTREQMK 420

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVFCSKDF 227
                +    L +    GL    +   +      +G D + E    A     +V  +   
Sbjct: 421 DELTSLLTFVLDLLKDYGLNDFYLELSTKNEEKFVGDDATWE---EATRTLAEVAEASGL 477

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P P                       A      + +  D++    ++S   ++    
Sbjct: 478 QLVPDPG--------------------GAAFYGPKISVQAKDAIGRTWQMSTIQLD---- 513

Query: 288 FYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +   DG     V +     G++    AV+   + G    W   +AP
Sbjct: 514 FNLPERF----ELEYTAPDGTRQRPVMIHRALFGSIERFFAVLTEHYAGAFPAW---LAP 566

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++  I +    +   D  E+I  +L   G  V  D   ++ G +   A     P  +I 
Sbjct: 567 VQVRCIPVA---EKFEDYLEEIAKQLRAEGVRVEIDRSDDRFGKKIRNASKDKVPFTLIA 623

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G   V  + V  + R       + + E +          R
Sbjct: 624 GGDDVDANAVSFRLRDGSQDNQVPVAEAVERILTVIRERR 663


>gi|284929738|ref|YP_003422260.1| prolyl-tRNA synthetase, family II [cyanobacterium UCYN-A]
 gi|284810182|gb|ADB95879.1| prolyl-tRNA synthetase, family II [cyanobacterium UCYN-A]
          Length = 606

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 111/234 (47%), Positives = 148/234 (63%), Gaps = 3/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK     L+E+P +AEI SHKL+LR+  I + S GIYS+LPL  + L   + IIREE
Sbjct: 1   MQLSKVLFVTLREDPAEAEIISHKLLLRSCYIRRVSSGIYSYLPLMWRVLRKTSQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  G  E  +P LQ +DLW ESGR+ +Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNSIGGQECLLPQLQISDLWEESGRWKTYTEAEGIMFSLIDRQNRELALGPTHEEVVTSI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  + SY+ +P   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSFD   E  + +Y+ +
Sbjct: 121 VRDMVVSYKQMPLNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFDENLENLQKNYDMV 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +Y  I  R GL    + A+SG IGG  S EF+VL D GE ++  ++D     
Sbjct: 181 SQAYCNILKRCGLSFKVVEADSGTIGGLASQEFMVLTDVGEDEILYTEDNSYAA 234



 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 122/252 (48%), Gaps = 6/252 (2%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDF-----MDFPIPSENTDFDDIISLNSIVEQWTA 254
           G IG DL   +I + +  E+      D       +F   S    +  + S      +   
Sbjct: 350 GYIGPDLEDSYISIEENLESSFLRIADKTIINLKNFVTGSNKEGYHTVGSNWGKSHKLPE 409

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                             + + +S +G+EVGH+F  GTKYS  M ATF   +G++  + M
Sbjct: 410 LVFDVRRAKEGDKISENSQERLISKKGVEVGHVFQLGTKYSKKMKATFTDKNGEEKPIVM 469

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R+V + +E +HD  GIIWP ++AP+   +I     ++   +  EKIY  L+ 
Sbjct: 470 GCYGIGVSRLVQSAVEQNHDKHGIIWPLAIAPYHAIIIVPNVKEKQQMEIAEKIYYDLNS 529

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G +   DD  E+IGS+F  A+L+G P Q++ G + +   KVE+  R T   +++ +EE+
Sbjct: 530 IGIETILDDRTERIGSKFKDAELIGIPYQIVTG-RTLKFGKVEVVDRKTKNSQEVIIEEL 588

Query: 435 INYASHRFSNNR 446
                  F N +
Sbjct: 589 PKLFHEFFKNIK 600


>gi|163846770|ref|YP_001634814.1| threonyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222524584|ref|YP_002569055.1| threonyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|163668059|gb|ABY34425.1| threonyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222448463|gb|ACM52729.1| threonyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 594

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 135/446 (30%), Gaps = 42/446 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L          G+  + P G+     +   +RE Q R G
Sbjct: 184 YLHRLEEARKRDHRRLGKELGLF-FFSDDIGPGLPIFTPKGEIIRHEMEKFVREVQTRYG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRS-HIK 123
              +    +    L+ +SG YD+Y   M        D      P +      ++    + 
Sbjct: 243 YQHVWTGNVVKEQLYRKSGHYDNYRDSMFPPMVESEDLVFRLKPMNCPSHMTLYNQLGVI 302

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E      G+ R R     D + F   P+  +  ++       
Sbjct: 303 SYRDLPLRFAEFATLYRYEDSGALSGLTRVRALTQDDCHIF-CRPDQIQEEFSLALQVIR 361

Query: 183 RIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +          +R       G      E   LA         +     F +        
Sbjct: 362 EVLGTYQFTDYKVRLSLRGSEGKYVQDDEKWELATAALRSALEANGVEYFEVEG------ 415

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +    D L    ++S   ++       G         
Sbjct: 416 --------------EAAFYGPKADFLARDVLGREWQLSTIQVDFIQPARLG--------C 453

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D K H  V +     G       ++   + G   +W   +AP +  +I I     
Sbjct: 454 EYIGEDDKPHTPVVLHRAVTGTTERFMGILIEHYGGAFPLW---LAPVQAVVIPITDK-- 508

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++  RL   G  V  DD  +++  +   A L   P  +I+G++  +   V ++
Sbjct: 509 -QMEFARQVRQRLFMAGLRVELDDNRDRMQGKIRRAQLQKIPYMLIIGAREEAADSVAVR 567

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M ++  +  A       
Sbjct: 568 TRAGEDLGAMPVDAFLARALEEIRTR 593


>gi|237844903|ref|XP_002371749.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211969413|gb|EEB04609.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 844

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 88/475 (18%), Positives = 151/475 (31%), Gaps = 66/475 (13%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +    L L        S G   WLP G K  + +   +REE    G  E+ 
Sbjct: 390 EEAKKRDHRVLGQNLHLF-FFDTNVSPGSCFWLPDGAKVYNKLCMFMREEYRFRGFQEVI 448

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S DLW  SG Y +Y + M  L D   K     P +      +F+    SYR LP 
Sbjct: 449 SPNIFSCDLWKVSGHYQNYKENMY-LFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLPL 507

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +  K            ++ + G
Sbjct: 508 RLADFGVLHRNELSGSLTGLTRVRRFQQDDAHIF-CRLDQVKEEVADALNFLFFVYDQFG 566

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P               GE  V+ S +        E      +   +   
Sbjct: 567 FSF-ELFLSTRP-----------KKALGERAVWDSAEAALKAALEETGRPWQLNPGDG-- 612

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-------------- 295
                  A      + +L+D+L    +     ++      F  +Y               
Sbjct: 613 -------AFYGPKIDIRLWDALKRPHQCGTIQLDFQLPIRFNLQYRTQDEAVAGARDKAK 665

Query: 296 -------------------LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                                         G    V +    +G++  + AV+     GK
Sbjct: 666 EDKETGEKRTDSEHEQKEEEAFGVELPLRPGMARPVIIHRAILGSIERMCAVVIEHTGGK 725

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              W   ++P +  ++ I        D    +   L   G +V  D     +  +   A 
Sbjct: 726 LPFW---LSPKQCIVLPI---SDKVNDYAASVRDVLHSCGYEVGLDVSNNTVNKKIREAQ 779

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVIN-YASHRFSNNRPVL 449
           L  +   ++VG K  +D  V ++ R     + + S+E+++  +      N+R  L
Sbjct: 780 LQQWNYLLVVGEKERADKTVTVRDRADPEHQKVLSMEDLLTLFEKQGMPNSRKTL 834


>gi|224373093|ref|YP_002607465.1| prolyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|254782910|sp|B9LA07|SYP_NAUPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|223588823|gb|ACM92559.1| prolyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 574

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 108/231 (46%), Positives = 148/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P+DA +ASHK ++R G I Q + GIY + PLG+  LDN+  II++E
Sbjct: 1   MRWSRFFAYTQKEAPKDAVVASHKYLVRGGYIKQVAAGIYDFAPLGKMVLDNIRDIIKKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +  +   +LW E+GR   YGKE+LR+ DR D++ +  PT+EE + D+ R 
Sbjct: 61  MDASGAQEVMLTFVTPNELWEETGRAKKYGKELLRIKDRKDQSFVLAPTNEESVVDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF  T E     +N M  +
Sbjct: 121 TIKSYKQLPVNLYQINLKFRDEARPRFGLLRGREFIMKDAYSFHATEEDLDREFNLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF +LGL    + A+SG IGG  S EF+VLADTGE  +    +     
Sbjct: 181 YKNIFTKLGLDFRAVWADSGAIGGSGSKEFMVLADTGEDDIVVCSECDYAA 231



 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 105/220 (47%), Gaps = 3/220 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEV 284
             +  +   N     I     +            D+   K  D  P+        +GIEV
Sbjct: 356 MAEELVCGANKKDYHIKGAGLLDANLLGNLTVYRDIAAVKEGDKCPKCGAPLKITKGIEV 415

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GT YS PM+ATF   +GK     MG YGIG  R+++A IE +HD KGIIWP  +
Sbjct: 416 GHIFKLGTVYSEPMNATFLDENGKAKPFIMGCYGIGVSRLISAAIEQNHDDKGIIWPKQI 475

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APF + +I             E +Y +L+  G     DD  E+ G + A  +L+GFP+ V
Sbjct: 476 APFVVDIIVGDVKKDEQLIFAEDLYDKLTSAGVKTILDDRAERFGPKIADFELVGFPVCV 535

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IVG K + D KVE++ R TG + ++  +  +       +N
Sbjct: 536 IVGKK-LKDGKVEVRDRRTGEKFEVEKDMALEKVMEIINN 574


>gi|302527884|ref|ZP_07280226.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302436779|gb|EFL08595.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 678

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 137/439 (31%), Gaps = 36/439 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L +    +   G+  + P G      +    R      G   
Sbjct: 259 RLAEAERRDHRKLGAELDLFS-FPEEIGSGLPVFHPKGGIIRRELENYSRRRHEEAGYEF 317

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           ++ P +   DL+  SG    Y   M       ++       +  +   IFRS  +SYR L
Sbjct: 318 VNTPHISKGDLFHTSGHLPYYADTMFPPVQFEEEDYYLKAMNCPMHNLIFRSRGRSYREL 377

Query: 129 PFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P   ++    +R E      G+ R R   M D++ +  T E        +    L +   
Sbjct: 378 PLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDSHIY-CTKEQMPSELRSLLKFVLDLLAD 436

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL    +   +         E     +  ET    + D     +P              
Sbjct: 437 YGLSDFYLELSTRGDSDKFIGEDWEWEEATETLRQAAVDSGLELVPDPGGA--------- 487

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + +  D++    ++S   ++      FG +Y+ P        DG
Sbjct: 488 ---------AFYGPKISVQAKDAIGRTWQMSTIQLDFNQNKRFGLEYTAP--------DG 530

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            +   + +     G++     V+   + G    W   ++P +   I I A      +   
Sbjct: 531 SRQRPIMIHRALFGSIERFFGVLTEHYAGAFPAW---LSPVQTVAIPITAD---QVEYLR 584

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L   G  V  D   +++  +         P  ++ G+K      V  + R  G  
Sbjct: 585 GVEKALRAKGIRVEVDASDDRMQKKIRTHTTQKVPFLLLAGAKDAEAGAVSFRFRDGGQI 644

Query: 427 EDMSLEEVINYASHRFSNN 445
             + +++ +   +   +  
Sbjct: 645 NGVPVDQAVEAIAEWVARR 663


>gi|115532348|ref|NP_001040689.1| Prolyl tRNA Synthetase family member (prs-2) [Caenorhabditis
           elegans]
 gi|3880329|emb|CAB04884.1| C. elegans protein T27F6.5a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 454

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 197/438 (44%), Gaps = 50/438 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H +++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++++P + +  LW +
Sbjct: 23  HTMLVENGFILPTAKGFYSLLPLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWEK 82

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRD 141
           +GR+++ G EM+R  DR    M   PT EE+ T++  +     +   P   YQI  KFRD
Sbjct: 83  TGRWEAMGPEMIRFHDRQQNHMCLQPTAEEMCTELIATLSPLKKSQFPLIVYQIGEKFRD 142

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LGLKSIPMRAE 198
           E+ PRFG+MR R+FLMKD YSF    E S+ +Y ++   Y RIF     L    I + A+
Sbjct: 143 EMNPRFGLMRGRQFLMKDMYSFSTDAETSQQTYAQIRQIYDRIFGEILQLDEDVIKVEAD 202

Query: 199 SGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           SG  GG +SHE+ + +   E  V FC                 +  + NS       P  
Sbjct: 203 SGVHGGHISHEYHLKSSLEEDFVNFCENCKNHNKFEGPGPAKCEKCAENSSKTVQKIP-- 260

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                   +E+ H F+ GTKYS  + A F+G       + M  +
Sbjct: 261 -----------------------SVEIAHTFHLGTKYSEALGAKFQG-----KPLDMCCF 292

Query: 318 GIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           GIG  R++ A I+      K +  P ++APF   +I  K+    V  +      +R  K 
Sbjct: 293 GIGVTRLLPAAIDLLSVSDKALRLPRAIAPFDAVIIVKKSLMSNVIVEMASSSASRYLKG 352

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG---SKFVSDSK--VEIKHRLTG----- 424
           G     DD  E   G +   A+ LG P  +++     + ++  K  +E+           
Sbjct: 353 GI--LLDDRVEMSAGKRIHDANRLGIPFILVIANETERSLATQKPVIEVFTTHAKSAEPM 410

Query: 425 IREDMSLEEVINYASHRF 442
            +  MSL+  + +     
Sbjct: 411 SQGSMSLDRFVTFVQSTL 428


>gi|313124034|ref|YP_004034293.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280597|gb|ADQ61316.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 565

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 103/222 (46%), Positives = 138/222 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  + +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPSSMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDNEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  + 
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIA 222



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 3/179 (1%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE   D +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R
Sbjct: 389 NEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQPVIMGSYGIGVTR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +++AV+E      G+ WP  +APF I +I +K  D++     E + A+ +K   DV +DD
Sbjct: 449 LLSAVVEQHATENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEAKFAK--YDVLYDD 506

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             E+ G +F  ADL+G P+++ VG +  +D  VE+K       + +++ ++ ++ ++  
Sbjct: 507 RNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLAVADLEDFIANEL 564


>gi|255325212|ref|ZP_05366318.1| proline--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297777|gb|EET77088.1| proline--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 589

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++R+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRTLRKIEDVVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  M+ GPTHEE+     +  
Sbjct: 64  DAIGGQEMLFPALLPREPYEKTNRWVEYGDNLFRLKDRKNADMLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYGRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             IF+RL +     +A SG +GG  S EF+ +++ GE     S
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSEVGEDTFVRS 226



 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              RGIE+GHIF  G KY+          +GK     MGSYGIG  R+
Sbjct: 412 EGDLAPENHGTLTLERGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSYGIGITRM 471

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A + E  HD KG+ WP +VAP+++ +  +   D    +A +K+   LS  G +V +DD 
Sbjct: 472 LAVLAEQRHDDKGLNWPVAVAPYQVHV-AVANKDAAAMEAGDKLVEELSAKGLEVLFDDR 530

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +   G +F  A+LLG P   I+G +   + K+E++ R  G   ++  E++++      
Sbjct: 531 PKVSPGVKFKDAELLGMPFVAILG-RAFKEGKIELRIRG-GETLEVPAEDIVDKILELV 587


>gi|157414824|ref|YP_001482080.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047085|sp|A8FKW6|SYP_CAMJ8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157385788|gb|ABV52103.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
          Length = 568

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 104/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G I Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFIEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGCEFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 241 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 282



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    +    K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 391 EGDCCAKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE+SHD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 451 LAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 511 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 567


>gi|29829100|ref|NP_823734.1| prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|81838439|sp|Q82K46|SYP1_STRAW RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|29606206|dbj|BAC70269.1| putative prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 564

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 96/230 (41%), Positives = 138/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R   + + + GI+SWLPLG+K L+NV  ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLNHKLLVRADYVRRTAAGIWSWLPLGKKVLENVARVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAMGGQEVLLPALLPKEPYEATGRWEEYGPELFRLKDRKGAEYLLGPTHEEIFTQLVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 126 CSSYKDLPVILYQIQAKYRDEARPRAGILRGREFLMKDSYSFDTADEGLAQSYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           ++IF+RLGL    + A SG +GG  S EF+  A  GE             
Sbjct: 186 IKIFNRLGLDHRIVSAVSGAMGGSASEEFLAPAPAGEDTFVDCPACDYAA 235



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 96/226 (42%), Gaps = 6/226 (2%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR- 276
           E   + +   +                  ++V           DV   +  D  P     
Sbjct: 342 EKVRYIADPRVAPGTAWITGANKINTHAKNVVAGRDFEVDDYLDVVVVEEGDPCPSCGTG 401

Query: 277 -VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA+ E + D 
Sbjct: 402 LRLDRAIEIGHIFQLGRKYADAFQLDVLGKEGKPVRVTMGSYGIGVSRAVAALAEQTADE 461

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           +G+ WP  +AP  + ++   A   +  +    +  +L   G  V  DD  G   G +F  
Sbjct: 462 QGLCWPKEIAPADVHVV--AAGKALQTELALDVAEKLGAAGVRVLVDDRAGVSPGVKFTD 519

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           A+L+G P  ++ G +      +E+K R TG RE++++EE I   S 
Sbjct: 520 AELIGVPQILVAGRRSAE-GVLELKDRKTGEREELTVEEAIARLSA 564


>gi|269126329|ref|YP_003299699.1| threonyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311287|gb|ACY97661.1| threonyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 684

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 149/445 (33%), Gaps = 45/445 (10%)

Query: 7   FLPILQENPRDAEIASHKLM-LRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQN 62
           +L +L+E    AE   H+ + +   +    S    G+  W P G      +    R+   
Sbjct: 276 YLKMLEE----AEKRDHRKLGVELDLFSFPSAIGGGLAVWHPKGGIVRKVMEDYSRKRHL 331

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  + L+  SG  D Y + M    + +       P +  +   IF++  
Sbjct: 332 EAGYEFVVTPHLSKSTLFETSGHLDWYAEGMYPPMELDGATYYPKPMNCPMHIMIFKARG 391

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   +++   +R E      G+ R+R F   DA+ F   P+        +    
Sbjct: 392 RSYRELPLRMFELGTVYRYEKSGVLHGLTRARGFTQDDAHIFVA-PDQLAEELASLLKFV 450

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + +    GL        + P                  +        +    +      +
Sbjct: 451 VGLLRDYGLTEFEAELATRP-----------------EKYVGEIADWEKAQAALEHALQE 493

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A YA   DVH     D++    ++S   +++        ++ L   A 
Sbjct: 494 AGLPYVIAEGEGAFYAPKIDVHIR---DAIGRRWQLSTLQVDL----QLPQRFDLEFQA- 545

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              ADG       +     G++    A++   + G     P  +AP ++  I I A    
Sbjct: 546 ---ADGTRQRPYMIHRALFGSVERFFAILLEHYAGA---LPPWLAPVQVVGIPIGAS--- 596

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EK+ A+L   G     D   +++  +   A     P  ++ G   VS   V  ++
Sbjct: 597 HVPHLEKVVAQLRARGIRAEVDASDDRMQKKIRNAQKAKIPYMLLAGDDDVSKDAVSFRY 656

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R    +  + + E +          
Sbjct: 657 RSGEQKNGVPIPEAVEEIVRAVEER 681


>gi|310796349|gb|EFQ31810.1| threonyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 791

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/491 (17%), Positives = 163/491 (33%), Gaps = 73/491 (14%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L   ++   +A    H+ + +       H+ S G   WLP G +  + + A I+E+
Sbjct: 307 SKKELAAHKKWLEEAAARDHRKLGQDQQLFFFHELSPGSAMWLPHGARIYNTLLAYIKEQ 366

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P + +A+LW  SG +D Y  +M  + D + +     P +      +F  
Sbjct: 367 YFKRDYHEVISPNMYNAELWKISGHWDHYKDDMF-VIDVDKEKFGLKPMNCPGHCLMFAH 425

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             K+Y  LP+      +  R+E      G+ R R F   DA+ F    +  K   + +F 
Sbjct: 426 TPKAYHQLPWRVADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-CREDQIKSEISNLFD 484

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG     +R  + P       E    A+    Q        +  +P    + 
Sbjct: 485 FLREMYGLLGFTF-KLRLSTRPEKYLGELETWNRAEDMLKQALDEFALTEAGVPWTLNEG 543

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---- 295
           D                A      + K+ D L    + +   ++      FG +Y     
Sbjct: 544 DG---------------AFYGPKIDIKIMDVLNREWQCATIQLDFQLPQNFGLEYVSADA 588

Query: 296 ------------LPMSATFKGA------------------------DGKDHYVQMGSYGI 319
                              K                          +G    V +     
Sbjct: 589 PAKSKEEAPAAPKAPEVKVKDPQAIIDSAAGVGEEKEKKRTIKPLTNGCQRPVIIHRAMA 648

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++     ++     GK   WP  ++P +I +I +        +  E++ A   K G  V
Sbjct: 649 GSIERFTGILIEHFAGK---WPFWLSPRQIMVIPVGKG---FVEYAEEVQATFKKQGMWV 702

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVI 435
             D  G  +  +   A L  +    +VG + +   +V I++R     +D    + + E +
Sbjct: 703 DVDLSGNTLPKKIRSAQLSQYNFIFVVGDEEMKHKQVNIRYRDDTSSQDRGKPVDVIEAV 762

Query: 436 NYASHRFSNNR 446
                +    R
Sbjct: 763 ERLK-KLREER 772


>gi|283955965|ref|ZP_06373455.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792625|gb|EFC31404.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 568

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 104/282 (36%), Positives = 156/282 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            I         + + +   +    + L      N   + + +
Sbjct: 241 KICQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 282



 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    +    K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 391 EGDCCAKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE+SHD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 451 LAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E   R   ++E +  +E++     + 
Sbjct: 511 NERFGVKMNDFELMGFPYALVIG-KGLENNEIEFIQREGLVKELIKTDELMEILKKKV 567


>gi|29833364|ref|NP_827998.1| threonyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|73919829|sp|Q827U8|SYT_STRAW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29610487|dbj|BAC74533.1| putative threonyl-tRNA synthetase [Streptomyces avermitilis
           MA-4680]
          Length = 658

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 140/441 (31%), Gaps = 40/441 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-IPDQIGSGLAVFHPKGGIVRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +  T E      +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREKMADELDKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   +  P     S E    A     QV   +     P P               
Sbjct: 432 LTDFYLELSTKDPEKFVGSDEVWEEATETLRQVAEKQGLPLVPDPG-------------- 477

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG- 307
                   A      + +  D++    ++S   ++    F    ++       + G DG 
Sbjct: 478 ------GAAFYGPKISVQAKDAIGRTWQMSTVQLD----FNLPERF----DLEYTGPDGS 523

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   V +     G++    AV+   + G    W   +AP +   I I        +  +K
Sbjct: 524 KQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIG---DAHVEYLQK 577

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A   K G  V  D   +++  +   A     P  VI G + ++   V  ++R      
Sbjct: 578 FAAEAKKKGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMTAGAVSFRYRDGSQEN 637

Query: 428 DMSLEEVINYASHRFSNNRPV 448
            + L+E I   +        V
Sbjct: 638 GIPLDEAIAKIAKVVEERTQV 658


>gi|307700804|ref|ZP_07637829.1| threonine--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|307613799|gb|EFN93043.1| threonine--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 669

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 151/458 (32%), Gaps = 52/458 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 246 KAYVTRLEEAEKRDHRRLGTELDLFS-FPEEIGSGLPVFHPKGALVRMEMENYSRQRHLE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
            G   +S P +    L+  SG    Y + M      +++                 P + 
Sbjct: 305 EGYSFVSTPHVTKGQLFETSGHLSWYKEGMFPAMHLDEERDAQGNVTKEGADYYLKPMNC 364

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R+R F   D++ +  T +  
Sbjct: 365 PMHNLIFKSRTRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIY-CTRDQM 423

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K    K+    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 424 KDELTKLLTFVLDLLKDYGLDDFYLELSTKNPQKFVGSDEVWEEATRTLQEVAEASGLEL 483

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P P                       A      + +  D++    ++S   ++    F 
Sbjct: 484 RPDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FN 519

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG +   V +     G++     V+   + G    W   +AP +
Sbjct: 520 LPERF----ELEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQ 572

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + L+ +          CE +  +L      V  D+  ++ G +   A     P  +IVG 
Sbjct: 573 VRLVPVA---DTFNAYCEDVAKQLRAENVRVEIDESDDRFGKKIRNAAKDKIPFTLIVGG 629

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +      V  ++R    +  + +   I   +    + +
Sbjct: 630 EDAEHGAVSFRYRGGEQKNGVKISAAIQEITETIRSRK 667


>gi|296117670|ref|ZP_06836254.1| proline--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969401|gb|EFG82642.1| proline--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 585

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P +AE+ SHKL++R G + + + GIYSWLPLG + L  +  ++REE 
Sbjct: 4   RLSELFLRTLREDPAEAEVPSHKLLVRAGYLRRAAPGIYSWLPLGLRTLRKIEDVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQELLFPALLPREPYELTDRWTEYGDNLFRLKDRKGADMLLGPTHEEMFAQTVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD++ EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFIMKDSYSFDMSDEGLDKSYARHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            +IF RLG++    +A SG +GG  S EF+ +++ GE     +
Sbjct: 184 QKIFDRLGIEYAICQATSGAMGGSASEEFLAVSEVGEDTFVRA 226



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 4/174 (2%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +      RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A + 
Sbjct: 412 PEGQGTLTLKRGIELGHIFQLGRKYTQAFDVQILDENGKRAIPTMGSYGIGVSRMMAVLA 471

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E  HD KG+ WP  VAP+++ +  +   D+    A  ++   L K G +V +DD  +   
Sbjct: 472 EQRHDEKGLNWPLDVAPYQVHV-AVANKDEDATKAGNELVEALDKAGVEVLFDDRPKVSP 530

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G +F  A+LLG P   I+G +   D  +E++ R  G   ++  E +++    R 
Sbjct: 531 GVKFKDAELLGMPYCAILG-RSFKDGIIELRIRG-GETLEVPAESIVDELLQRL 582


>gi|268679949|ref|YP_003304380.1| prolyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617980|gb|ACZ12345.1| prolyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 567

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 101/231 (43%), Positives = 146/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  ++ P+DA + SH+ ++R G I Q   G+Y++LP+G+  LD +  +++EE
Sbjct: 1   MKFSKLYAPTTKDAPKDATLPSHQYLVRGGFIVQVGSGLYNFLPMGKIVLDKIRNVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +  +  A+LW +SGRYD +GKE+ R+ DR +   + GPTHEEV+ DI R+
Sbjct: 61  MDETGAQEIQMGVVSPAELWKQSGRYDVFGKELCRIKDRKENEFVLGPTHEEVVVDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF+MKD YSF       K  ++ M  +
Sbjct: 121 RINSYKQLPLHLYQITTKFRDEARPRFGLLRGREFIMKDGYSFHEDEASMKAEFDVMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF+RLGL    + A+SG IGG  S EF+VLA  GE  +   +      
Sbjct: 181 YTKIFNRLGLDFRAVEADSGAIGGSGSKEFMVLAQNGEDDIVVCEQCSYAA 231



 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 1/209 (0%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              +  D   +   +  +     A      E    +    +    +GIEVGHIF  G KY
Sbjct: 360 CGANEVDYHMVGVGMFNFKEERYADLVAVKEGDVCACCGGRLGITKGIEVGHIFQLGQKY 419

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +  M ATF   +GK     MG YG+G  R+VA +IE+SHD KG IW    AP+ + +I  
Sbjct: 420 AKAMGATFLDKNGKAQPFYMGCYGVGVSRLVAVMIEASHDEKGCIWNKQTAPYLLDIIVS 479

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            + D+      E+IY+ L +    V  DD  E+ G +    +L+G P  +IVG K + + 
Sbjct: 480 NSKDEAQSAYAEEIYSALMQERLSVLLDDRNERFGFKMKDYELIGLPYALIVG-KELEEG 538

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            VEI  R T  +  +  EE +       +
Sbjct: 539 FVEIVERKTLEKTVVKKEEALLKLRELLA 567


>gi|313681237|ref|YP_004058975.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154097|gb|ADR32775.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 602

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 161/447 (36%), Gaps = 51/447 (11%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L    +   +AE   H+ +   ++     +    G   WLP G +    +  ++ +   +
Sbjct: 194 LKAYLDQMAEAEKRDHRKIGAEMKLFTFREEVGAGFPIWLPAGARMRSRLEQLLFKAHRK 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  +DLW  SG Y +YG+ M      ++      P +      ++   + 
Sbjct: 254 RGYEPVRGPEMLRSDLWKVSGHYQNYGENMY-FTHIDELEFGVKPMNCVGHIKVYEHDLH 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++  +  R E+     G+ R REF   DA+ F  T +  +    ++     
Sbjct: 313 SYRDLPLKYFEYGVVHRHEMTGALHGLFRVREFTQDDAHIF-CTADQIEQQIIEVVDFVD 371

Query: 183 RIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +I          M +      +G D   E    A             +D    +      
Sbjct: 372 KIMKTFEFNYKMMISTKPEKAVGDDAVWEISTNALKTAMDKNNLSYEIDEGGGAFYGPKI 431

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
           DI   ++I                               R  + G I      ++LP   
Sbjct: 432 DIKITDAIG------------------------------REWQCGTI---QLDFNLPARF 458

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G +  K   V +    +G+      ++   + G+    P  +AP +++++ I   
Sbjct: 459 ELEYNGEENAKIQPVMIHRAILGSFERFVGILTEHYAGEF---PMFIAPTQVAIVPIAPT 515

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       ++  +L  +G D    D  E +  +   A+    P+ +++G + V++  + 
Sbjct: 516 HEA---YARELADKLIDMGADFEIFDKNESLNKRIRTAEKGRVPMIIVLGDEEVANKSIA 572

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R +  + ++S E+ I+    + + 
Sbjct: 573 VRDRRSREQYNLSEEDFISLVKQKINE 599


>gi|148508028|gb|ABQ75826.1| threonine--tRNA ligase [uncultured haloarchaeon]
          Length = 643

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 154/443 (34%), Gaps = 42/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD      +L L + +      G+  + P G+K L+ +++         G
Sbjct: 231 YLERREKAKERDHRKIGQELELFS-IPDVTGPGLPLYHPNGKKILNELSSYAESLNVDAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L   +LW  SG Y++Y  +M  L D +D      P +      IF     SY
Sbjct: 290 YEPVETPHLFKTELWKVSGHYENYVDDMF-LLDVSDDEYGLKPMNCPGHATIFNQQSWSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  +Y+    +R E R    G+ R   F + D + F  TPE  +    ++  S   +
Sbjct: 349 RDLPVRYYEDGKVYRKEQRGELSGLSRVWAFTIDDGHLF-CTPEQIEQEVTQVIESIQEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +  GL +  +   + P     S E    A++    V  S+       P +         
Sbjct: 408 LNTFGLDA-EVALATRPEKSVGSDEIWQQAESQLETVLTSRGINYDLEPGDG-------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +    D+L  N       ++                 ++ G
Sbjct: 459 ------------AFYGPKIDFAFEDALGRNWDGPTVQLDFNMPDR--------FDLSYTG 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +DH  V +     G+      V+    DGK  +W   +AP +I ++ I         
Sbjct: 499 EDNQDHQPVMIHRALYGSYERFFMVLIEHFDGKFPLW---LAPEQIRILPI---SDDQLG 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +       V  DD    +  +         P  +I+GS       + ++ R  
Sbjct: 553 YAHRVKNQFDD--FRVEIDDQTRTLSRKIRAGQDDRIPYMIILGSDEEEAGTISVRDRFE 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             ++D++++   ++ +    N +
Sbjct: 611 NEKQDVNIDAFRSHVNAERRNRQ 633


>gi|83859100|ref|ZP_00952621.1| threonyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83852547|gb|EAP90400.1| threonyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 613

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 158/442 (35%), Gaps = 41/442 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + ++  RD      +L L T ++ +   G+  WLP G    D +  + R  ++R G   
Sbjct: 193 RLEEQAKRDHRKIGKELGLFT-LVEEVGAGLPMWLPAGNVIRDELEKLARITEHRAGYKR 251

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +S P +   DL+  SG    Y ++M      +++     P +      I+     SYR+L
Sbjct: 252 VSTPHITKGDLYHRSGHLPYYAEDMYAPIMIDEQEYYLRPMNCPHHHMIYAHDQWSYRDL 311

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +    +R E      G+MR R F   DA+ +   P+ +K  +  +   +   +  
Sbjct: 312 PVRLSEYGQVYRYEASGGLSGLMRVRGFCQNDAHIY-CRPDQAKDEFLAVMHMHADYYRL 370

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G++   MR     +  +   +++  A+  +T +   K  MD                  
Sbjct: 371 FGIQDFWMRLSLPDM--ENLDKYVDDAEGWKTALSILKQAMDE----------------- 411

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
               +                D + ++   +   I    + +  TK     +  +   DG
Sbjct: 412 --SGYPYKEVEGEAAFYGPKVDFMVKSVVGTEYAISTNQLDFMATK---RFNLVYTAEDG 466

Query: 308 KDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +    +G+    AA +   + GK   W   ++P +  +I I    +   +  +
Sbjct: 467 SKQPVYVIHRAPMGSHERFAAFLIEHYAGKFPTW---LSPTQAVVIPIADRHE---EYAQ 520

Query: 367 KIYARL-------SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            +  +L          G     D   E++  +   A     P  ++VG     + +V ++
Sbjct: 521 TVRDQLFFSEVDSVNTGIRTETDFASERMQKKIRNAQHRQIPYMLVVGDAEAENGEVAVR 580

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           HR  G    M +E++I   +  
Sbjct: 581 HRDHGDMGTMKVEDLIARIAKE 602


>gi|227513178|ref|ZP_03943227.1| prolyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
 gi|227083559|gb|EEI18871.1| prolyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
          Length = 569

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYCAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S +   F 
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSDESDYFA 231



 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 1/180 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + K    RGIE+GHIF  GT+YS  ++A     +G+   V MGSYGIG  R+
Sbjct: 389 EGELSPDGKGKLKFTRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMGSYGIGISRL 448

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A+ E + D  G++WP +VAP+ + +I I    +V  +   +I  +L++ G +V  DD 
Sbjct: 449 LSAISEQNADENGLVWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTENGIEVLVDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +FA +DLLG PL++ VG K   +  VEIK R  G   +  +EE+ +       N
Sbjct: 509 RERPGVKFADSDLLGIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEELSDTVKILLKN 567


>gi|315500848|ref|YP_004079735.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315407467|gb|ADU05584.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 589

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 134/231 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD + AI+R+E
Sbjct: 3   LRMSTLLLRTLREDPADAEVPSHRLLLRAGYVRRAAPGGYTWLPLGKLVLDRITAIVRDE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + + 
Sbjct: 63  MTGIGDQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRKGAEHLLAPTHEELAALLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR+ P T +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +
Sbjct: 123 LFTSYRDFPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F RLGL    + A SG +GG  S EF+     GE             
Sbjct: 183 YERVFTRLGLDFTTVHAMSGAMGGSASEEFLAATPVGEDTFVGCTACDYAA 233



 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 7/182 (3%)

Query: 264 NEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             +  DS P     +    RGIE+GHIF  G +Y+   +    G +GK     MG YGIG
Sbjct: 402 EVRPGDSCPACADGELTIRRGIEIGHIFQLGRRYTDAFAVDVLGPEGKPVRPTMGCYGIG 461

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VAAV E  HD +G++WP +VAP  + LI      Q   DA   +  RL+  G  V 
Sbjct: 462 VSRAVAAVAEQHHDDRGLVWPAAVAPCDVHLIAAGKGPQ--LDAALDLGGRLAAAGLRVL 519

Query: 381 WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD      G +F  A+L+G P  V+VG + +++  VE++ R TG R ++ +E ++    
Sbjct: 520 VDDRTHVSAGVKFTDAELIGIPRAVVVGRR-LAEGYVELRDRATGERTELPVEAIVERLR 578

Query: 440 HR 441
             
Sbjct: 579 DE 580


>gi|302864555|ref|YP_003833192.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302567414|gb|ADL43616.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 589

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 134/231 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD + AI+R+E
Sbjct: 3   LRMSTLLLRTLREDPADAEVPSHRLLLRAGYVRRAAPGGYTWLPLGKLVLDRITAIVRDE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + + 
Sbjct: 63  MTGIGDQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRKGAEHLLAPTHEELAALLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR+ P T +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +
Sbjct: 123 LFTSYRDFPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y R+F RLGL    + A SG +GG  S EF+     GE             
Sbjct: 183 YERVFTRLGLDFTTVHAMSGAMGGSASEEFLAATPVGEDTFVGCTACDYAA 233



 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 7/182 (3%)

Query: 264 NEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             +  DS P     +    RGIE+GHIF  G +Y+   +    G +GK     MG YGIG
Sbjct: 402 EVRPGDSCPACADGELTIRRGIEIGHIFQLGRRYTDAFAVDVLGPEGKPVRPTMGCYGIG 461

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VAAV E  HD +G++WP +VAP  + LI      Q   DA   +  RL+  G  V 
Sbjct: 462 VSRAVAAVAEQHHDDRGLVWPAAVAPCDVHLIAAGKGPQ--LDAALDLGGRLAAAGLRVL 519

Query: 381 WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD      G +F  A+L+G P  V+VG + +++  VE++ R TG R ++ +E ++    
Sbjct: 520 VDDRTHVSAGVKFTDAELIGIPRAVVVGRR-LAEGYVELRDRATGERTELPVEAIVERLR 578

Query: 440 HR 441
             
Sbjct: 579 DE 580


>gi|269977288|ref|ZP_06184261.1| threonyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|269934591|gb|EEZ91152.1| threonyl-tRNA synthetase [Mobiluncus mulieris 28-1]
          Length = 669

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 151/458 (32%), Gaps = 52/458 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 246 KAYVTRLEEAEKRDHRRLGTELDLFS-FPEEIGSGLPVFHPKGALVRMEMENYSRQRHLE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
            G   +S P +    L+  SG    Y + M      +++                 P + 
Sbjct: 305 EGYSFVSTPHVTKGQLFETSGHLSWYKEGMFPAMHLDEERDAQGNVTKEGADYYLKPMNC 364

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R+R F   D++ +  T +  
Sbjct: 365 PMHNLIFKSRTRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIY-CTRDQM 423

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K    K+    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 424 KDELTKLLTFVLDLLKDYGLDDFYLELSTKNPQKFVGSDEVWEEATRTLQEVAEASGLEL 483

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P P                       A      + +  D++    ++S   ++    F 
Sbjct: 484 RPDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FN 519

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG +   V +     G++     V+   + G    W   +AP +
Sbjct: 520 LPERF----ELEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQ 572

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + L+ +          CE +  +L      V  D+  ++ G +   A     P  +IVG 
Sbjct: 573 VRLVPVA---DTFNAYCEDVAKQLRAENVRVEIDESDDRFGKKIRNAAKDKVPFTLIVGG 629

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +      V  ++R    +  + +   I   +    + +
Sbjct: 630 EDAEHGAVSFRYRGGEQKNGVKISAAIQEITETIRSRK 667


>gi|13882685|gb|AAK47237.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
          Length = 578

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 94/222 (42%), Positives = 135/222 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E N
Sbjct: 1   MSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEMN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +   
Sbjct: 61  AIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y 
Sbjct: 121 SSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           RIF RL ++ + + A SG +GG  S EF+  + +GE      
Sbjct: 181 RIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRC 222



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  G
Sbjct: 413 MARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDELG 472

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+L
Sbjct: 473 LRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAEL 531

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 532 LGMPWIVVVG-RGWADGVVELRDRFSGQTREL 562


>gi|58697298|ref|ZP_00372664.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536340|gb|EAL59818.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 580

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 83/397 (20%), Positives = 141/397 (35%), Gaps = 44/397 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 221 RNKDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRK 280

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 281 KLINNGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 340

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           SH +SYR+LP    +     R+E      G+MR R F   DA+ F +  E       K  
Sbjct: 341 SHTRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM-EEQVNSETIKFC 399

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG   I ++    P       E    A+    +            P E   
Sbjct: 400 DLLKEVYSELGFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAVKEAGLSYELSPGEGAF 459

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               K    R  + G        + LP 
Sbjct: 460 YGPKLEF---------------------------VLKDAIGRSWQCGT---LQVDFILPE 489

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A + GADG K H V +    +G       ++  ++ GK  +W   +AP +++++ I 
Sbjct: 490 RLGAFYIGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVW---LAPTQLAILTIT 546

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      KI   L + G  V  D   E+I  + 
Sbjct: 547 N---EADGYATKISNVLKEQGVRVKTDLTNEKISYKI 580


>gi|302550176|ref|ZP_07302518.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302467794|gb|EFL30887.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 658

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L    E   +AE   H+ +     +     Q   G+  + P G      +    R 
Sbjct: 241 TKDELKQHLEFLAEAEKRDHRKLGSELDLFSVPEQIGSGLAVFHPKGGIIRRVMEDYSRR 300

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+  SG  D Y   M               P +  +   IF
Sbjct: 301 RHEEEGYEFVYTPHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIF 360

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      +K 
Sbjct: 361 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMAEELDKT 419

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     QV   +     P P   
Sbjct: 420 LTFVLGLLRDYGLTDFYLELSTKDPEKFVGSDEAWEEATETLRQVAEKQGLPLVPDPG-- 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    ++  
Sbjct: 478 ------------------GAAFYGPKISVQTKDAIGRTWQMSTIQLD----FNLPERF-- 513

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + GADG K   V +     G++    AV+   + G    W   +AP +   I I 
Sbjct: 514 --DLEYTGADGAKQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIG 568

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  EK  A   + G  V  D   +++  +   A     P  VI G + +S   
Sbjct: 569 ---DAHVEYLEKFAAAAKRKGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMSHGS 625

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           V  ++R       +  +E I            V
Sbjct: 626 VSFRYRDGSQENGIPFDEAIAKIQKVVEERAQV 658


>gi|317508518|ref|ZP_07966185.1| prolyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316253209|gb|EFV12612.1| prolyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 606

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 134/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ +HKL++R G   + S G+++WLPLG KAL  +  ++REE 
Sbjct: 4   RLSELFLRTLREDPADAEVPNHKLLVRGGYFRRVSPGVFAWLPLGLKALRQIENVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L     +  S R+  YG  + RL DR     +  PTHEE+   + +  
Sbjct: 64  DGIGGQEILLPALAPRQPYETSNRWTEYGDNLFRLKDRKGGDYLLAPTHEELFALLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G+K +Y+    +Y
Sbjct: 124 YTSYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDVDEAGNKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG+  + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFDRLGISYVIVAATSGAMGGSASEEFLAESAIGEDTYVRC 226



 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 89/166 (53%), Gaps = 1/166 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                K V+ARGIE+GH+F  GTKY+   S    G +GK   + MGSYGIG  R+V  + 
Sbjct: 413 PDGAGKLVAARGIEIGHVFALGTKYTDAFSVDVLGENGKPARLIMGSYGIGVSRLVGVIA 472

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD KG+ WP  VAPF++ +++          A +   A L   G  V  DD     G
Sbjct: 473 EQWHDEKGLRWPPQVAPFQVHVLSTGKGSAEAEAAEQY-AAELEAHGLRVLLDDRKASPG 531

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +FA A+LLG P+ V+VG  + S+ KVE+K R  G    +  + V+
Sbjct: 532 VKFADAELLGAPVIVVVGRDWASEGKVELKERFAGESGSVDADVVV 577


>gi|315057961|gb|ADT72290.1| Prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 568

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 241 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 282



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 391 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A   E+SHD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 451 LAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 511 NERFGVKMNDFELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 567


>gi|88597079|ref|ZP_01100315.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190768|gb|EAQ94741.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315927040|gb|EFV06395.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 568

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 241 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 282



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 391 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 451 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 511 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 567


>gi|116515019|ref|YP_802648.1| hypothetical protein BCc_078 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256873|gb|ABJ90555.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 642

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 145/430 (33%), Gaps = 40/430 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    S  L L    I + S G+  W   G      +   +R +  +   IE+  P +  
Sbjct: 241 DHRKISKLLSLY--HIQKESPGMIFWHKNGYIIFKQLENFLRNKLFQNNYIEVKSPIIID 298

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW +SG +  Y + +      N++     P +      IF+  +KSY++LP    +  
Sbjct: 299 KSLWKKSGHWKHYNQSIFTTKSENNQY-CIKPMNCPAHVQIFKYGLKSYKDLPIRMAEFG 357

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+ R R F   DA+ F  T +  K   N        ++H  G K I +
Sbjct: 358 SCHRQETSGSLHGLFRVRGFTQDDAHIF-CTKKQIKSELNHCIRLLFDLYHTFGFKKIFI 416

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P       +    A+     V    +        E   +   I +          
Sbjct: 417 KFSTRPENRIGKDDIWDQAEKDLELVLKKNNLFFEYQIGEGAFYGPKIEIALED------ 470

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQM 314
                                   R  + G I       S  + A +   +  K + + +
Sbjct: 471 ---------------------NLKRIWQCGTI-QLDFYLSKQLDAFYINKNNIKKNPIII 508

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++     ++   ++GK  IW   + P ++++IN+    +      + I  +  K
Sbjct: 509 HRAFLGSIERFIGILIEEYNGKLPIW---LCPIQVAIINV---SEKHIFFIKNIEKKFLK 562

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                  D     I  +         P  +I+G K V ++ + I++R   I+   ++   
Sbjct: 563 NNIRFISDISNNSISFKIRFYLEQKVPYIIIIGDKEVKNNYITIRNRFNNIQYKQNINFF 622

Query: 435 INYASHRFSN 444
           I    +  ++
Sbjct: 623 IKKIINNVNS 632


>gi|218562195|ref|YP_002343974.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|81858473|sp|Q9PHX1|SYP_CAMJE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112359901|emb|CAL34689.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 569

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 452 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 568


>gi|329767542|ref|ZP_08259065.1| prolyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328835876|gb|EGF85598.1| prolyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 566

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 165/314 (52%), Gaps = 18/314 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y+ LPL  + +  +  +IREE
Sbjct: 1   MRQSRTFIPTTREVPSSAEATSHKLLIKAGMVKQVSAGVYTHLPLATRVIQKIEKVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P LQS + W +SGR++  G E++R+ DR +      PT EE++     +
Sbjct: 61  HEKIGAVELLMPILQSDEYWKKSGRWNKMGDELIRVTDRKNAGYALSPTAEEIICQTVSN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  TPE  + +Y   + +
Sbjct: 121 MVTSYKQLPVNLYQIQTKFRDEIRPRLGLLRCKEFIMKDGYSFHDTPESLRETYKDYYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE  +  +++              
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEVGEDTIAYTEESDYAA--------- 231

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              ++ +           T     E+     P  + +           Y G   +  M A
Sbjct: 232 ---NIETAAVVEQNYTMPTGFEKKERSLLETPNQQTIDDIA------AYCGVDVNRAMKA 282

Query: 301 TFKGADGKDHYVQM 314
               ADG+ + V M
Sbjct: 283 LALKADGEFYLVLM 296



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           +M       N      I++N    +  A Y        +   D     K    +GIEVG 
Sbjct: 353 YMYNHSCGANKKGFHYINVNPGDYEIDAHYDLRMIEEGDLAEDLSGPIKFA--KGIEVGQ 410

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           +F  G  YS  M  T+  A+G+ ++  MG YGIG  RV++A+IE   D KGIIWP  VAP
Sbjct: 411 VFELGKGYSESMDITYLDANGRANHFYMGCYGIGVTRVISAIIEQHSDDKGIIWPKEVAP 470

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           +++ L+ +    +      E++YA+L+  G +V +DD  E+ G +F  ADL+G PLQV+V
Sbjct: 471 YQVHLVCVDVKKEEQVKLSEELYAQLTAAGYEVLYDDRAERAGVKFNDADLIGIPLQVVV 530

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G K   +  VE+K R T  + D  + +V+     
Sbjct: 531 GKK-AGEGIVEVKERKTLEKVDTEVADVLAKVEA 563


>gi|256851262|ref|ZP_05556651.1| prolyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260660686|ref|ZP_05861601.1| prolyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|282934730|ref|ZP_06339973.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297206129|ref|ZP_06923524.1| proline--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256616324|gb|EEU21512.1| prolyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260548408|gb|EEX24383.1| prolyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|281301305|gb|EFA93606.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297149255|gb|EFH29553.1| proline--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 565

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA  ASHK+M+R G I Q + G+YS+LPLG + L     II EE
Sbjct: 1   MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATKEQLDKQFDDQKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + I     +        ++   +     +     NE   D 
Sbjct: 335 PVKADWADKIIADETVKDLYNIVVGANETGYQFQNANLNRDFKVDEFSDIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLQFTTSIEVGHIFKLGTYYTETMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            +    G+ WP  +APF + LI +K  D+V     E +YA+ S    DV +DD  E+ G 
Sbjct: 455 QNLTEHGVAWPKEIAPFALHLIQMKMKDEVQTKLAESLYAKFSDK-YDVLYDDRNERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G PL++ +G K  +D  VE+K  L     +++L E+    +   
Sbjct: 514 KFADADLVGAPLRITIGKK-AADGIVEVKRPLDEKASEVTLAELEALVAKEL 564


>gi|332296932|ref|YP_004438854.1| Prolyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332180035|gb|AEE15723.1| Prolyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 615

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 100/241 (41%), Positives = 144/241 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +  L+E P +A IASH+LMLR G+I +   G++++LP G ++   V  IIREE
Sbjct: 1   MKTSETLISTLREVPAEAVIASHQLMLRAGLIRKLGNGLFTYLPFGLRSFRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+    +   +LW ESGR+D+ G  MLR+ +R D+ ++  PT EE +T + R 
Sbjct: 61  MDAIGALEIKPSVVVPGELWRESGRWDTMGAGMLRIKNRVDQELVVSPTAEEAVTALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  K+RDE+RPR+GVMR REF+MKDAYSF    E    +Y  M  +
Sbjct: 121 ELSSYKQLPIVAYQINTKYRDEIRPRYGVMRGREFMMKDAYSFHADAESLDKTYLAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  IP+ A+SG +GG  S EF+V +  G+  +             +     
Sbjct: 181 YKRIFKRLGLSVIPVSADSGAMGGSGSEEFMVESPIGDDTLILCPKCGYAANTEKAACAP 240

Query: 241 D 241
           D
Sbjct: 241 D 241



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 5/186 (2%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +          T+DV      D  P    +  S +G E+GHIF  G KY+  M+ T+  
Sbjct: 412 HVEPVRDFTPFMTADVRTVVAGDLCPCCGAEFYSKKGNELGHIFKLGYKYTKSMNVTYLD 471

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +GK     MG YGIG  R +A++IE  HDG GI+WP S AP+++ ++ +K  +   ++ 
Sbjct: 472 ENGKQQVPTMGCYGIGVDRSLASIIEEHHDGNGIVWPMSAAPYQVVIVPVKY-EGTMKEI 530

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +YA L + G +V  DD  E+ G +F   DL+G P++++VG K + +  VE+K R   
Sbjct: 531 ADSLYAELRQAGIEVLLDDRNERPGVKFKDMDLIGIPVRIVVGEKNLPN--VELKLRSAA 588

Query: 425 IREDMS 430
             + + 
Sbjct: 589 DSDLVP 594


>gi|320534417|ref|ZP_08034899.1| threonyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320133364|gb|EFW25830.1| threonyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 678

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 72/454 (15%), Positives = 142/454 (31%), Gaps = 44/454 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +   + +     G
Sbjct: 243 YQTRLAEAAKRDHRRLGAELDLYS-FPEEIGPGLVVFHPKGAMLRHQIEQYVVDRHLDYG 301

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRN----------DKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M      D             +       +  +
Sbjct: 302 FDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLADEERDAEGNITKAGQEYYLKAMNCPM 361

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +FRS  +SYR LP  F+++   +R E      G+ R R F   D++++  TP+ +  
Sbjct: 362 HNLVFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTY-CTPDQAGE 420

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                   +L I    GL    +   +    G             +   F   D      
Sbjct: 421 EIRAQIDFFLSILKAFGLTDFHLELSTRDEEG------------AKKDKFIGSDADWDAA 468

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                +  D   L  + +      A      + ++ D++    ++S    +         
Sbjct: 469 TQALQNACDASGLEVVPD--PGGAAFYGPKVSVQVKDAIGRTWQMSTIQYDFNQPER--- 523

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG     + + S  +G++     V+   + G    W   ++P ++ L
Sbjct: 524 -----FDLEYTAADGTHQRPIMIHSAKLGSVERFIGVLTEHYAGAFPTW---LSPVQVRL 575

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +    +      + + ARL   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 576 IPVA---EAFDTYVDDVAARLRAKGVRVEVDHSDDRFGKKIRNASKDKIPFTLIAGGEDA 632

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               V  + R       + +EE + +        
Sbjct: 633 EAGAVSFRFRDGQQTNGVPVEEAVTHIVSVIDAR 666


>gi|255560023|ref|XP_002521030.1| threonyl-tRNA synthetase, putative [Ricinus communis]
 gi|223539867|gb|EEF41447.1| threonyl-tRNA synthetase, putative [Ricinus communis]
          Length = 691

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 146/420 (34%), Gaps = 43/420 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K ++  L+E    A+   H+L+         HQ S G + +LP G +  + +   IR
Sbjct: 305 KRLKEYIQQLEE----AKKYDHRLLGTKQELFFCHQLSPGSWFFLPHGTRIYNKLMDFIR 360

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +    G  E+  P + +  LW  SG   +Y + M  L +   +     P +      IF
Sbjct: 361 VQYRERGYEEVKSPNIYNMKLWETSGHAANYKENMF-LLEIEKQEFGLKPMNCPGHCVIF 419

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  ++SYR LP       +  R+E      G+ R R F   DA+ F       K     +
Sbjct: 420 QHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRETQIKDEVTGV 478

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G     ++  + P            A++                  +  
Sbjct: 479 LNFIDYAYKIFGFTY-DLKLSTRPEKYLGDLATWEKAESSLKSALDDFGKPWQINEGDG- 536

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L    + +   ++    F    ++ L 
Sbjct: 537 -------------------AFYGPKIDISVSDALNRKFQCATLQLD----FQLPDRFELE 573

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA  +    ++  V +    +G++  + A++   + GK   WP  ++P +  +  +   
Sbjct: 574 YSA--EDEAKRERPVMIHRAILGSVERMFAILLEHYKGK---WPFWLSPRQAIVCPVSEK 628

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q   +   ++  ++ K G  +  D    +I  +   A L  +   ++VG +     +V 
Sbjct: 629 SQ---EYAVQVQDQIHKAGYYIDVDLTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVA 685


>gi|57238257|ref|YP_178662.1| prolyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|81819550|sp|Q5HVM3|SYP_CAMJR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57167061|gb|AAW35840.1| prolyl-tRNA synthetase [Campylobacter jejuni RM1221]
          Length = 569

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A   E+SHD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 452 LAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 568


>gi|309811262|ref|ZP_07705053.1| threonine--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308434802|gb|EFP58643.1| threonine--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 665

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 154/443 (34%), Gaps = 32/443 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +        G+  + P G      +   +R      G
Sbjct: 246 YLERLAEAEKRDHRKLGAELDLFS-FPENIGPGLPVFHPKGGIIKREMEDYVRRRHIEEG 304

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DL+  SG    Y   M    D + +       +  +  +IFRS  +SY
Sbjct: 305 FSYVGTPHIAKEDLFYTSGHLPYYADGMFPPLDVDGQNYRLKAMNCPMHNEIFRSRGRSY 364

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F++    +RDE      G+ R R     D++S+ +TPE +      +    L +
Sbjct: 365 RELPLRFFEFGTVYRDEKSGVLSGLTRVRMITQDDSHSY-VTPEQAPGEIKHLLDFILGL 423

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G+    +   +  + GD   +FI   +  +     +K   D  + S      D   
Sbjct: 424 LRDFGMNDFYLELSTRDVDGDKKDKFIGTDEQWD---IATKVLSDVALESGLELVPDPGG 480

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + +  D++    ++S    +      FG +Y        + 
Sbjct: 481 A-----------AFYGPKISVQARDAIGRTWQMSTIQYDFNQPARFGLEY--------QA 521

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG +   V + S   G++     V+   + G    W   +AP ++  + +    +   D
Sbjct: 522 ADGSRQQPVMVHSAKFGSIERFLGVLVEHYAGAFPAW---LAPVQVLAVPVA---EEYYD 575

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  +L + G  V  D   ++   +   A     P  +I G +   +  V  + R  
Sbjct: 576 YLQDVAMKLREAGVRVEVDMSDDRFPKKIRNASKSKAPFILIAGEEDRDNGAVSFRFRDG 635

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             +  + + + I   +   +  +
Sbjct: 636 SQKNGVPVADAIAEITRVITERQ 658


>gi|284996685|ref|YP_003418452.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|284444580|gb|ADB86082.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 545

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  +   KL L +    +   G+  + P GQ   + + A +RE  
Sbjct: 124 QLKDYLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREIN 182

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +   D+W  SG Y  Y  +++      D+  +  P +      I++S 
Sbjct: 183 DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGV-KPMNCPAHILIYKSK 241

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++YR+LP  F +    +R E +    G++R R F+  D + F L  +  +     +   
Sbjct: 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISK 300

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            + ++H+ G     I     + P     S E    A                        
Sbjct: 301 TVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES------------- 347

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ DSL    ++S   ++    F    ++    
Sbjct: 348 -------GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVD----FNLPERF---- 392

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A+I     GK   W  SV   ++ ++ I   
Sbjct: 393 KLEYIDKDGIKKRPVMVHRAIYGSIDRFVAIILEHFKGKLPTWLSSV---QVRVLPIT-- 447

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V 
Sbjct: 448 -DEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVT 506

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R      ++  E+ +       +  
Sbjct: 507 VRARGNIEVRNVKFEKFLELLITEIAQR 534


>gi|146304348|ref|YP_001191664.1| threonyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|172046910|sp|A4YH38|SYT_METS5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145702598|gb|ABP95740.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Metallosphaera
           sedula DSM 5348]
          Length = 541

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 161/444 (36%), Gaps = 41/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + + +  D  I   ++ L +    +   G+  + P GQ   + +   +RE     G
Sbjct: 124 YLQWLEKASETDHRIIGERMDLFSFH-EESGPGLVLFHPKGQLIRNEMINYMREINASMG 182

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +    LW  SG YD+Y  +ML    ++D  +   P +      I++S ++SY
Sbjct: 183 YQEVYTSHVFRTVLWKISGHYDTYRDKMLIFQ-KDDDELGIKPMNCPAHILIYKSRVRSY 241

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +    G++R+R F   D + F L  +  K     +    L +
Sbjct: 242 RDLPIRFSEFGNVYRWEKKGELYGLLRTRGFTQDDGHIF-LREDQLKDEVKNLVRKTLDV 300

Query: 185 FHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             + G   + + +   + P     S E    A      V                     
Sbjct: 301 LGKFGFKGEDVRINLSTRPDESIGSDEQWEKATKALLDVLKEL----------------- 343

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              N          A      +  + DSL    ++S   ++    F    ++       +
Sbjct: 344 ---NVPYVVKEKEGAFYGPKIDFDIRDSLNRWWQLSTIQVD----FNLPERF----KLEY 392

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG K   V +     G++  + A++     GK   W   ++P ++ ++ I    +  
Sbjct: 393 VDEDGSKKRPVMVHRAIYGSLDRMIAILLEHFRGKLPTW---LSPVQVRVLPI---SEDN 446

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++   L + G     D  GE +  +       G P  VIVG K  S+ KV I+ R
Sbjct: 447 LDYAKRVMDVLVQRGIRTEIDPSGETLSKRIKRGYDDGVPYLVIVGRKEASEEKVTIRAR 506

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + + L   ++  S    N 
Sbjct: 507 GNVEIKGVPLSRFVDELSLEIGNR 530


>gi|303310925|ref|XP_003065474.1| threonyl-tRNA synthetase, cytoplasmic, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105136|gb|EER23329.1| threonyl-tRNA synthetase, cytoplasmic, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320034634|gb|EFW16577.1| threonyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 757

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 152/462 (32%), Gaps = 32/462 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 306 KSLQEHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 361

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    LW  SG ++ Y  +M +LA    +     P +      +F
Sbjct: 362 TEYRKRGYQEVQSPNMYDVGLWRTSGHWNHYKDDMFKLAVEK-REWALKPMNCPGHCIMF 420

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 421 NHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQITQEIEGL 479

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 480 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLKEALTRFKGSDWEIDEGDG 538

Query: 238 DFD---------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            F          D +            Y    +   E + + + + K    +  E G   
Sbjct: 539 AFYGPKIDITIQDALKREFQCATIQLDYQLPQNFKLEYMTNEIAKPKAPEPKKEESG-PR 597

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G   +        G  G+   V +    IG+      ++     GK   WP  ++P +
Sbjct: 598 EGGDSKAADSDDGVPGP-GRARPVMIHRAIIGSFERFFGILIEHFGGK---WPFWLSPRQ 653

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           I ++ +        D  E++   L     +V  D  G  +  +     L  +    +VG+
Sbjct: 654 ILIVPVMP---AVYDYVEELQGILRGDKLNVDIDVSGNTLQKKIRNGQLAQYNFIFVVGA 710

Query: 409 KFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           +      V I++R     +     + L E            R
Sbjct: 711 QEKETRTVNIRNRDDPSSQAKGSLVPLNEAREKLRALRKERR 752


>gi|296814972|ref|XP_002847823.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238840848|gb|EEQ30510.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 739

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 154/467 (32%), Gaps = 40/467 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  ++E    AE  +H+ + +        + S G    LP G K  + +  ++R
Sbjct: 286 KLLQEHLKFMEE----AEKRNHQKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 341

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 342 TEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMF 400

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T          +
Sbjct: 401 GHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTDNQIMEEIEGL 459

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 460 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDYAEAQLREALTKFKGADWDIDEGDG 518

Query: 238 DFD---------DIISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENKRVSARGIEVGHI 287
            F          D +            Y    +   E +  +++P++   +    E    
Sbjct: 519 AFYGPKIDITISDALKREHQCATIQLDYQLPLNFKLEYMTGETVPKSAAPADPQAEAK-- 576

Query: 288 FYFGTKYSLPMSATFKGA----DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                  S    A          G+   V +    IG+      ++     GK   WP  
Sbjct: 577 ---PEDDSKRAQAPTADPAAPGPGRARPVVIHRAIIGSFERFFGILIEHFGGK---WPFW 630

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           ++P +I ++ + A      D  E++   L     +V  D  G  +  +     L  +   
Sbjct: 631 LSPRQILIVPVMAS---ANDYVEELQEILRGDKLNVDIDLSGHTMQKKIRNGQLAQYNFI 687

Query: 404 VIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
            +VG++      V I++R     +     + LEE            R
Sbjct: 688 FVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKERR 734


>gi|320590732|gb|EFX03175.1| threonyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 752

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 164/484 (33%), Gaps = 72/484 (14%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S Y   + +   +D               H+ S G   +LP G +  + +   I  E +
Sbjct: 287 LSDYMKFLEEAAKKDHRRIGQ--DQELFFFHKLSPGSPFFLPHGMRIFNALKEFILSEYH 344

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +   +E+  P + +ADLW  SG ++ Y ++M  L     +     P +      IF S  
Sbjct: 345 KRDYVEVMSPNMFNADLWRTSGHWEHYQEDMFTLEVEKQQ-WALKPMNCPGHCVIFGSRE 403

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +  +  R+E      G+ R R F+  D++ F    +        +F   
Sbjct: 404 RSYRELPLRMAEFGILHRNEASGALSGLTRVRRFIQDDSHIF-CEEDQIGSEIRDLFDFL 462

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ +LG+K   ++  + P     + E    A+                          
Sbjct: 463 RTVYGKLGMKFR-LKLSTRPEKYLGNLETWDKAEATLQHALEE----------------F 505

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSA 300
                +         A      + ++ D+L    + +   ++    F    +++L  M+A
Sbjct: 506 TKESGAEWSLNPGDGAFYGPKIDIQIMDALRRWHQCATLQLD----FQLPQQFNLSYMTA 561

Query: 301 TFKGADGK-------------------------------------DHYVQMGSYGIGAMR 323
               +DGK                                        V +    +G+  
Sbjct: 562 ASSNSDGKAEAKTVETKPVEAETKDGKDDSKAVTASAAQTLAPGYSRPVMIHRAVLGSFE 621

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A +     GK   WP  ++P +I L+ + A  +   D   ++   L   G  V  D 
Sbjct: 622 RFIATLSEHFAGK---WPFWLSPRQILLVPVMADAE---DYVREVQKVLKARGFYVDSDL 675

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASHRF 442
               +  +     +L +    ++GSK + D  V I+ R + G    +SL+ V+   S R 
Sbjct: 676 GANTMNKKIRNGQVLQYNFIFVLGSKEMQDRSVSIRVRDSKGDLTTLSLDVVVERLS-RL 734

Query: 443 SNNR 446
              +
Sbjct: 735 RETK 738


>gi|86149024|ref|ZP_01067256.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840382|gb|EAQ57639.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 569

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 452 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 568


>gi|329769169|ref|ZP_08260589.1| prolyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328839388|gb|EGF88966.1| prolyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 566

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  K + N+  +IR+E
Sbjct: 1   MRQSRTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATKVIQNIEKVIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQS D W +SGR+   G E++R+ DR +      PT EEV+     +
Sbjct: 61  HAKIGASELLMPILQSEDYWKQSGRWYKMGDELIRVTDRKNAGYALSPTAEEVICQTVSN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  +PE  + +YN  + +
Sbjct: 121 MVTSYKQLPVNLYQIQTKFRDEIRPRLGLLRGKEFIMKDGYSFHDSPESLRETYNDYYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE  +  +++     
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEVGEDTIVYTEESDYAA 231



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 3/214 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           +M       N      I++N    +  A Y        +   D     K    +GIEVG 
Sbjct: 353 YMYNHSCGANKKGFHYINVNPGDYEVDAYYDLRMIEEGDLAEDLSGPVKFA--KGIEVGQ 410

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           +F  G  YS  M  T+  A+G+ ++  MG YGIG  RV++A+IE  +D  GIIWP  V P
Sbjct: 411 VFELGKGYSESMDITYLDANGRANHFYMGCYGIGVSRVISAIIEQHNDENGIIWPKEVTP 470

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           +++ L+ +    +      E++Y +L++ G +V +DD  E+ G +F  ADL+G PLQV+V
Sbjct: 471 YQVHLVCVDIKKEEQVKQSEELYKQLTEAGYEVLYDDRAERAGVKFNDADLIGIPLQVVV 530

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G K V D  VE+K R T  + D  +E+V++    
Sbjct: 531 GKK-VGDGIVEVKERKTLEKVDTKVEDVLSKVEA 563


>gi|315453307|ref|YP_004073577.1| threonyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132359|emb|CBY82987.1| threonyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 612

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 152/440 (34%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      +   G+  WLP G +    +  ++     R+G
Sbjct: 207 YLTQLEEAKKRDHRKLGQELGLFR-FDEEVGAGLPIWLPNGMRLRKRIEDLLSVALLRSG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  + LW  SG Y++Y + M      ++      P +      +++  ++SY
Sbjct: 266 YEPVRGPEILKSSLWKISGHYENYKENMY-FTTIDEVEYGIKPMNCVGHIKVYQHALRSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +  K     +     R+
Sbjct: 325 RDLPLRFYEYGVVHRHEQSGVLHGLLRVREFTQDDAHIF-CRFDQIKAEVQAILAFTKRV 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P     S E    A +   +    +                   
Sbjct: 384 MGAFGFDY-EMELSTKPTKYIGSDEVWEQATSALKEALEEQGVPFKVDEGGG-------- 434

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D++    +     +++     F   Y+         
Sbjct: 435 ------------AFYGPKIDIKITDAIRRKWQCGTVQVDMNLPARFHLSYASE------- 475

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D  +  V +    +G+     AV+   + G    +   +AP +++L+ I A      D 
Sbjct: 476 QDSPEMPVMIHRAILGSFERFIAVLTEHYGGNFPFF---IAPVQVALVPISAD---QHDY 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L   G      +  E +  +    +    PL  ++G+K   ++ + I+ R  G
Sbjct: 530 AQDLCTQLRHAGIFAEVANKNESLAKRIRTLEKQKVPLIAVIGAKETQENALAIRDRALG 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M  +E IN    +   
Sbjct: 590 EQYTMDSKEFINMCQEKMQE 609


>gi|255327209|ref|ZP_05368284.1| threonine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295827|gb|EET75169.1| threonine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 677

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 147/448 (32%), Gaps = 35/448 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L   +E   +AE   H+ + R             G+    P G      +   +R 
Sbjct: 246 TKDELVAYKERIAEAERRDHRRLGRELDLFSFPKNIGPGLPVIHPKGGVIKREMEDYVRT 305

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              + G   +S P +   DL+  SG    Y   M    + ++        +  +  +I+R
Sbjct: 306 RHIQEGFQYVSTPHISKEDLFYTSGHLPYYADGMFPPMELDNGHYRLKAMNCPMHNEIYR 365

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP  F++    +RDE      G+ R R     D++S+ +T E +      + 
Sbjct: 366 SRGRSYRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSY-VTKEQAPDEVRHLL 424

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    G+    +   +    GD   +FI   +  E      +             
Sbjct: 425 KFMLSLLEDFGMTDFYLELSTRDTEGDKKDKFIGTDEQWEAATAVLEQV----------- 473

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                     +       A      + +  D++    ++S    +      FG +Y    
Sbjct: 474 ---AKETGLELVPDPGGAAFYGPKISVQAKDAIGRTWQMSTVQYDFNQPSRFGLEY---- 526

Query: 299 SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               + ADG     V + S   G++     V+   + G    W   +AP ++  + +   
Sbjct: 527 ----QAADGTVQEPVMIHSAKFGSIERFLGVLTEHYAGAFPAW---LAPVQVIGVPVA-- 577

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D   +I  +L   G  V  D   ++   +   A     P  +I G +      V 
Sbjct: 578 -EAFNDYMTEIADKLRAHGVRVEVDYGSDRFTKKIRTASTEKVPFILIAGGEDAEHGAVS 636

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            + R       + ++E +        N 
Sbjct: 637 FRFRGNKQENGVPVDEAVARIVEHIRNR 664


>gi|219685509|ref|ZP_03540326.1| threonine--tRNA ligase [Borrelia garinii Far04]
 gi|219672908|gb|EED29930.1| threonine--tRNA ligase [Borrelia garinii Far04]
          Length = 581

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 159/448 (35%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   R+      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRNHRKLGKELDLFS--IHEEIGPGLIFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  D Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVVDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  S+     + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFSSLKAYLSTKP-----------------DKSVGNDYDWEMSLKVLEEA 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             +      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSNFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++P +  +I +   
Sbjct: 440 --TYTAEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQAVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+  +    G  +  D+   ++ ++         P   I+G +   + K+ 
Sbjct: 494 --TVEDYTIKVLNKFKNAGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREAIEEKIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L+E +     +  + 
Sbjct: 552 IRTRTNEQISGIELDEALKLILLKVRDK 579


>gi|15899227|ref|NP_343832.1| threonyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|229578099|ref|YP_002836497.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|229583311|ref|YP_002841710.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|22654132|sp|Q97VW8|SYT_SULSO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516740|sp|C3NMY1|SYT_SULIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516744|sp|C3N9B3|SYT_SULIY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13815789|gb|AAK42622.1| Threonyl-tRNA synthetase (thrS) [Sulfolobus solfataricus P2]
 gi|228008813|gb|ACP44575.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|228014027|gb|ACP49788.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
          Length = 545

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  +   KL L +    +   G+  + P GQ   + + A +RE  
Sbjct: 124 QLKDYLSWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREIN 182

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +   D+W  SG Y  Y  +++      D+  +  P +      I++S 
Sbjct: 183 DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGV-KPMNCPAHILIYKSK 241

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++YR+LP  F +    +R E +    G++R R F+  D + F L  +  +     +   
Sbjct: 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISK 300

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            + ++H+ G     I     + P     S E    A                        
Sbjct: 301 TVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES------------- 347

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ DSL    ++S   ++    F    ++    
Sbjct: 348 -------GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVD----FNLPERF---- 392

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W  SV   ++ ++ I   
Sbjct: 393 KLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSV---QVRVLPIT-- 447

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V 
Sbjct: 448 -DEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVT 506

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R      ++  E+ +       +  
Sbjct: 507 VRARGNIEVRNVKFEKFLELLITEIAQR 534


>gi|205355399|ref|ZP_03222170.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346633|gb|EDZ33265.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 569

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE+SHD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 452 LAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 568


>gi|283954167|ref|ZP_06371692.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794446|gb|EFC33190.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 568

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDAILPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E  +  +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLEREFELMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 181 YSQILQRMGLDFRAVEANSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRVK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    E L      N   + + +
Sbjct: 241 KTCQDERPEANYASKFYTPNIKTIESLAQFFKINAFYTIKAV 282



 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           +    +    K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 391 QGDCCAKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGISRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW   +APF + +I     D+   +   K+Y  L+K+G +V  DD 
Sbjct: 451 LAVAIEANHDEKGCIWNKVLAPFVLEIIVSNIKDEKALEFANKLYEDLTKLGLEVLLDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + +++VE+  R    +E + ++E++     + 
Sbjct: 511 NERFGVKMNDFELMGFPYALVIG-KGLENNEVELIQREALTKELVKIDELMEILKKKV 567


>gi|153952152|ref|YP_001398429.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|166980114|sp|A7H4J9|SYP_CAMJD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152939598|gb|ABS44339.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 569

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/231 (43%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAA 232



 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE+SHD KG IW  ++APF + +I     D+   +   K+Y  L+++G +V  DD 
Sbjct: 452 LAVAIEASHDEKGCIWNKTLAPFVLEIIVSNIKDEKTLEFANKLYEDLTELGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E   R   ++E +  +E+      + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVIG-KGLENNEIEFIQREGLVKELIKTDELTEILKKKV 568


>gi|296272187|ref|YP_003654818.1| prolyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096362|gb|ADG92312.1| prolyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 572

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/229 (43%), Positives = 145/229 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P  +E P DA +ASH+ ++R G I Q   G+Y++LPLG+  LD + A+++EE
Sbjct: 1   MKFSQMFMPTTKETPNDATLASHQYLIRGGFITQTGSGLYNFLPLGKIVLDKIRAVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +  +   +LW +SGR    G E+L+  DR     +  PT+EE + DI ++
Sbjct: 61  MDNTGANELLMSFVTPLELWEQSGRASVMGPELLKFKDRKGAGFVLSPTNEETVVDIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y I  KFRDE RPRFG+MR REFLMKDAYSF  T E     ++ M  +
Sbjct: 121 RITSYKDLPINLYHINTKFRDEARPRFGLMRGREFLMKDAYSFHATHEDLVREFHVMEDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y +I+ RLGL+   + A+SG IGG  S EF+VLA++GE  +   +D   
Sbjct: 181 YKKIYERLGLEYRVVAADSGAIGGSGSKEFMVLANSGEDTIVVCEDCEY 229



 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 97/179 (54%), Gaps = 2/179 (1%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E    S    K +  +GIE GHIF  GTKYS  M ATF   +GK     MG YGIG  R
Sbjct: 394 QEGDTCSCCGGKLIHTKGIEAGHIFQLGTKYSSAMDATFLDNNGKAQPFIMGCYGIGVSR 453

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +VAAVIE +HD KG IW    APF + +I   A  +   +A +KIY  L   G     DD
Sbjct: 454 LVAAVIEQNHDDKGCIWTKETAPFMVDVIVSNAKKEEELNAGKKIYNDLKIAGISTILDD 513

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               + G + +  +L+GFP  V+VG K + +  VEI +R T  +E++SL+EV+N     
Sbjct: 514 RVNARFGFKMSDFELIGFPYAVVVGKK-LPEGIVEIVNRKTLEKEEVSLDEVVNKLKKL 571


>gi|291457352|ref|ZP_06596742.1| proline--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381187|gb|EFE88705.1| proline--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 597

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 140/232 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG K L+ +  IIREE N
Sbjct: 1   MSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLKVLNKIEDIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 181 RIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 232



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 431 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 490

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D+   +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 491 WPSVIAPAAVHVVA-TGKDEKAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 549

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  +VG  +V+D  +EI+ R    +  +   E     + RF+
Sbjct: 550 GVPLVAVVGRDYVNDGTIEIRDRNGENKVAVPAAEAAGTLADRFA 594


>gi|86151603|ref|ZP_01069817.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85841232|gb|EAQ58480.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 569

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 452 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREDLVKELIKTDELMEILKKKV 568


>gi|119194837|ref|XP_001248022.1| threonyl-tRNA synthetase, cytoplasmic [Coccidioides immitis RS]
          Length = 757

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 152/462 (32%), Gaps = 32/462 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 306 KSLQEHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 361

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    LW  SG ++ Y  +M +LA    +     P +      +F
Sbjct: 362 TEYRKRGYQEVQSPNMYDVGLWRTSGHWNHYKDDMFKLAVEK-REWALKPMNCPGHCIMF 420

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 421 NHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQITQEIEGL 479

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 480 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLKEALTRFKGSDWEIDEGDG 538

Query: 238 DFD---------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            F          D +            Y    +   E + + + + K    +  E G   
Sbjct: 539 AFYGPKIDITIQDALKREFQCATIQLDYQLPQNFKLEYMTNEIAKPKAPEPKKEESG-PR 597

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G   +        G  G+   V +    IG+      ++     GK   WP  ++P +
Sbjct: 598 EGGDSKAADSDDGVPGP-GRARPVMIHRAIIGSFERFFGILIEHFGGK---WPFWLSPRQ 653

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           I ++ +        D  E++   L     +V  D  G  +  +     L  +    +VG+
Sbjct: 654 ILIVPVMP---AVYDYVEELQGILRGDKLNVDIDVSGNTLQKKIRNGQLAQYNFIFVVGA 710

Query: 409 KFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           +      V I++R     +     + L E            R
Sbjct: 711 QEKETRTVNIRNRDDPSSQAKGSLVPLNEAREKLRALRKERR 752


>gi|159037395|ref|YP_001536648.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157916230|gb|ABV97657.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 671

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 143/448 (31%), Gaps = 43/448 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +   +R     
Sbjct: 250 KAYLRLLEEAARRDHRKLGTDLDLFS-FPEEIGSGLPVFHPKGGVLKRTMEDYVRARHIE 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M                +  +   I+RS  +
Sbjct: 309 EGFDYVGTPHISKEGLFHTSGHLPYYADGMFPPMHLEGADYYLKAMNCPMHNLIYRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +RDE      G+ R R F   D++S+  T E +      +    L
Sbjct: 369 SYRELPMRLFEFGSVYRDEKSGVIHGLTRVRGFTQDDSHSY-CTKEQAPAEIKHLLAFVL 427

Query: 183 RIFHRLGLKSIPMRAESG----PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +    G+    +   +     P     S E    A     Q          P P     
Sbjct: 428 GLLQDFGITDFVLELSTRDDANPDKFVGSAEDWATATAVLEQCARDTGLDLVPDPG---- 483

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + +  D++    ++S    +      FG +Y    
Sbjct: 484 ----------------GAAFYGPKISVQAKDAIGRTWQMSTIQYDFNQPAGFGLEY---- 523

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               + ADG +   V +     G++     V+   + G    W   +AP ++  I I+  
Sbjct: 524 ----QAADGSRQRPVMIHCAKFGSIERFIGVLTEHYAGAFPAW---LAPVQVVGIPIR-- 574

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +   A L   G     D   +++  +   A     P   I G   V+   V 
Sbjct: 575 -EDHTEYLDGFVAGLRAAGIRAQVDAGDDRMQKKIRTAQQQKIPFMAIAGDDDVAAGTVS 633

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++R    R  + + E +++     ++ 
Sbjct: 634 FRYRDGSQRNGVPVAEAVSHVLDVVNSR 661


>gi|261837575|gb|ACX97341.1| threonyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 612

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 157/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L  G   +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLF-GFDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A +   +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATSALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNE--- 475

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 476 RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVESEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|238854745|ref|ZP_04645075.1| proline--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260663977|ref|ZP_05864830.1| prolyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282932864|ref|ZP_06338261.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313472268|ref|ZP_07812760.1| proline--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238832535|gb|EEQ24842.1| proline--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239529664|gb|EEQ68665.1| proline--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260561863|gb|EEX27832.1| prolyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281302899|gb|EFA95104.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 565

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA  ASHK+M+R G I Q + G+YS+LPLG + L     II EE
Sbjct: 1   MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     +        ++   +     +     NE   D 
Sbjct: 335 PVKADWADKVIADETVKGLYNVVVGANETGYQFQNANLDRDFKVDEFSDIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLQFTTSIEVGHIFKLGTYYTETMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            +    G+ WP  +APF + LI +K +D+      E +  + S+   DV +DD  E+ G 
Sbjct: 455 QNLTEHGVAWPKEIAPFTLHLIQMKMNDEDQTKLAESLETKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ +G K  +D  VE+K        ++S++++  + +   
Sbjct: 514 KFADADLVGAPIRITIGKK-AADGIVEVKRPTDDKAVEISVDDLEAFVAKEL 564


>gi|227875460|ref|ZP_03993601.1| threonyl-tRNA synthetase [Mobiluncus mulieris ATCC 35243]
 gi|227844014|gb|EEJ54182.1| threonyl-tRNA synthetase [Mobiluncus mulieris ATCC 35243]
          Length = 692

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 151/458 (32%), Gaps = 52/458 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 269 KAYVTRLEEAEKRDHRRLGTELDLFS-FPEEIGSGLPVFHPKGALVRMEMENYSRQRHLE 327

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
            G   +S P +    L+  SG    Y + M      +++                 P + 
Sbjct: 328 EGYSFVSTPHVTKGQLFETSGHLSWYKEGMFPAMHLDEERDAQGNVTKEGADYYLKPMNC 387

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R+R F   D++ +  T +  
Sbjct: 388 PMHNLIFKSRTRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIY-CTRDQM 446

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K    K+    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 447 KDELTKLLTFVLDLLKDYGLDDFYLELSTKNPQKFVGSDEVWEEATRTLQEVAEASGLEL 506

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P P                       A      + +  D++    ++S   ++    F 
Sbjct: 507 RPDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FN 542

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG +   V +     G++     V+   + G    W   +AP +
Sbjct: 543 LPERF----ELEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQ 595

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + L+ +          CE +  +L      V  D+  ++ G +   A     P  +IVG 
Sbjct: 596 VRLVPVA---DTFNAYCEDVAKQLRAENVRVEIDESDDRFGKKIRNAAKDKIPFTLIVGG 652

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +      V  ++R    +  + +   I   +    + +
Sbjct: 653 EDAEHGAVSFRYRGGEQKNGVKISAAIQEITETIRSRK 690


>gi|322371434|ref|ZP_08045983.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320548966|gb|EFW90631.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 645

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 152/448 (33%), Gaps = 45/448 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              +     +   RD      ++ L +  +  HS G  ++ P G      +   +RE+  
Sbjct: 232 LESFLERREEAAKRDHRKIGREMDLFS--VPDHSPGCVNFHPNGMAIRRELEEYVREKNA 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGK--EMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             G  E+  P L   +LW +SG YD + +  EM    ++N       P +      I+  
Sbjct: 290 ELGYEEVKTPELNHTELWKKSGHYDHFKEEGEMFAW-EQNGHEYGLKPMNCANHAHIYDD 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP  F +  + +R+E      G++R R F   D ++F + PEG +    +   
Sbjct: 349 QRRSYRDLPLRFSEFGMCYRNEQSGELSGMLRVRGFTQDDGHAF-VRPEGIREEIARTLS 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   GL +  +  E+ P       E    A          +         E   +
Sbjct: 408 VIDGMYEAFGLDAHLV-LETKPDDAIGDDELWERAHEALRNALEDEGLEYDVAEGEGAFY 466

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I++N                    + D++     +    ++                
Sbjct: 467 GPKIAIN--------------------VEDAIGREWTIGTVQLDFVQPERL--------D 498

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++ G D ++H  V +    +G+M     V      GK   W   +AP ++ ++ I   +
Sbjct: 499 ISYVGEDNEEHRPVMIHRALLGSMERFMGVFIEHVAGKFPFW---LAPEQVRILPITDDE 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  E+I   L      V  DD    +G +         P  +IVGS       + +
Sbjct: 556 SG---YAEEIADELGS--FRVEVDDRDWTLGKKIRAGHDDRVPYMIIVGSDEAESGTISV 610

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R       +  ++   +    +   R
Sbjct: 611 RDREERQEGGVERDDFRRHLEAEYGEKR 638


>gi|224283879|ref|ZP_03647201.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287860|ref|YP_003939118.1| prolyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251796|gb|ADO53544.1| prolyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 599

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 142/232 (61%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE +
Sbjct: 1   MSTMFLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREEID 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 181 RIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMAIGEDTFALAPSGKAWNVEA 232



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           ++ I  +        ++     +      A    H +   D          RG+E+G +F
Sbjct: 382 EWIIGGDEAGKHRFHAVYGRDFKADGTVEAVEVRHGDMSPDGSGP--LSFERGVEIGQVF 439

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G KYS  +       +GK   V MG YGIG  RV+A + E+ HD +G+ WP  +AP +
Sbjct: 440 QLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAETHHDERGLAWPAVIAPAQ 499

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
           + ++     D    DA EK+ A L + G +V +DD  +   G +F  A+L+G PL  + G
Sbjct: 500 VHVVA-TGKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGVKFKDAELIGVPLIAVAG 558

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              V++  +EI++R +     + + +     + R 
Sbjct: 559 RDTVNNGTIEIRNRDSSDSVAVPVADAAQTLASRL 593


>gi|86153499|ref|ZP_01071703.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843225|gb|EAQ60436.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 569

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 452 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREDLVKELIKTDELMEILKKKV 568


>gi|332686700|ref|YP_004456474.1| prolyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332370709|dbj|BAK21665.1| prolyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 574

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/224 (45%), Positives = 146/224 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P L+E P DAE+ SH+++LR G I Q + G+Y++LPL  + ++N+  I+REE
Sbjct: 1   MRQSKMFIPTLREIPNDAEVLSHQILLRGGYIRQIAAGVYAYLPLANRIIENLKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEM +P +  A+LW +SGRY +YG ++ RL DRN++  I GPTHEE   ++  +
Sbjct: 61  FEKIDAIEMLLPAILPAELWEKSGRYQTYGPDLYRLKDRNERQYILGPTHEETFVELIGN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSF  T E    +YN    +
Sbjct: 121 DVNSYKRLPLNLYQIQSKYRDEKRPRFGLLRGREFIMKDGYSFHATEESLDTTYNDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y  IF R GL    +  + G +GG  S EF+ ++D GE  +  S
Sbjct: 181 YSAIFKRCGLVFRSIIGDGGAMGGKDSKEFMAISDIGEDTICFS 224



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 1/164 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  GT+YS  M+AT    +GK+ Y+ MGSYGIG  R+ AA+ E + D KG+ 
Sbjct: 404 KGIEIGHIFKLGTRYSESMNATILDENGKEQYIIMGSYGIGVSRLFAAIAEQNADDKGVN 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  +APF I ++ +   D       E+I   +   G +V  DD  E+ G +FA ADL+G
Sbjct: 464 WPIGIAPFDIHVVQMNMKDDEQTQLSEEIEELMISAGYEVLVDDRNERAGVKFAEADLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P+++ VG K + D  VEIK + TG   ++  EE+ +  +    
Sbjct: 524 CPIRITVGKKAIDD-IVEIKIKRTGEMLEVKKEELKSTLAILLK 566


>gi|227829326|ref|YP_002831105.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|259516733|sp|C3MKT5|SYT_SULIL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227455773|gb|ACP34460.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
          Length = 545

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  +   KL L +    +   G+  + P GQ   + + A +RE  
Sbjct: 124 QLKDYLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREIN 182

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +   D+W  SG Y  Y  +++      D+  +  P +      I++S 
Sbjct: 183 DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGV-KPMNCPAHILIYKSK 241

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++YR+LP  F +    +R E +    G++R R F+  D + F L  +  +     +   
Sbjct: 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISK 300

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            + ++H+ G     I     + P     S E    A                        
Sbjct: 301 TVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES------------- 347

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ DSL    ++S   ++    F    ++    
Sbjct: 348 -------GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVD----FNLPERF---- 392

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W  SV   ++ ++ I   
Sbjct: 393 KLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSV---QVRVLPIT-- 447

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V 
Sbjct: 448 -DEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVT 506

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R      ++  E+ +       +  
Sbjct: 507 VRARGNIEVRNVKFEKFLELLITEIAQR 534


>gi|306818771|ref|ZP_07452493.1| threonine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|304648457|gb|EFM45760.1| threonine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
          Length = 692

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 151/458 (32%), Gaps = 52/458 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 269 KAYVTRLEEAEKRDHRRLGTELDLFS-FPEEIGSGLPVFHPKGALVRMEMENYSRQRHLE 327

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
            G   +S P +    L+  SG    Y + M      +++                 P + 
Sbjct: 328 EGYSFVSTPHVTKGQLFETSGHLSWYKEGMFPAMHLDEERDAQGNVTKEGADYYLKPMNC 387

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R+R F   D++ +  T +  
Sbjct: 388 PMHNLIFKSRTRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIY-CTRDQM 446

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K    K+    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 447 KDELTKLLTFVLDLLKDYGLDDFYLELSTKNPQKFVGSDEVWEEATRTLQEVAEASGLEL 506

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P P                       A      + +  D++    ++S   ++    F 
Sbjct: 507 RPDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FN 542

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG +   V +     G++     V+   + G    W   +AP +
Sbjct: 543 LPERF----ELEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQ 595

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + L+ +          CE +  +L      V  D+  ++ G +   A     P  +IVG 
Sbjct: 596 VRLVPVA---DTFNAYCEDVAKQLRAENVRVEIDESDDRFGKKIRNAAKDKVPFTLIVGG 652

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +      V  ++R    +  + +   I   +    + +
Sbjct: 653 EDAEHGAVSFRYRGGEQKNGVKISAAIQEITETIRSRK 690


>gi|229583844|ref|YP_002842345.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259516679|sp|C3N1B5|SYT_SULIA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|228018893|gb|ACP54300.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|323476419|gb|ADX81657.1| threonyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 545

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  +   KL L +    +   G+  + P GQ   + + A +RE  
Sbjct: 124 QLKDYLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREIN 182

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +   D+W  SG Y  Y  +++      D+  +  P +      I++S 
Sbjct: 183 DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGV-KPMNCPAHILIYKSK 241

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++YR+LP  F +    +R E +    G++R R F+  D + F L  +  +     +   
Sbjct: 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISK 300

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            + ++H+ G     I     + P     S E    A                        
Sbjct: 301 TVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES------------- 347

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ DSL    ++S   ++    F    ++    
Sbjct: 348 -------GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVD----FNLPERF---- 392

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W  SV   ++ ++ I   
Sbjct: 393 KLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSV---QVRVLPIT-- 447

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V 
Sbjct: 448 -DEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVT 506

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R      ++  E+ +       +  
Sbjct: 507 VRARGNIEVRNVKFEKFLELLITEIAQR 534


>gi|145348874|ref|XP_001418868.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579098|gb|ABO97161.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 674

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 145/442 (32%), Gaps = 43/442 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y   I +   RD       L       H  S G   +   G +  +N+   IRE+
Sbjct: 273 MK--EYTTRIEEAKKRDHRTIG--LNQELFFFHHLSPGSCFFQKHGARIYNNLVQFIREK 328

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P + + DLW  SG    Y + M       ++     P +      +F  
Sbjct: 329 YWEYEYDEVITPNIYNFDLWKTSGHAAHYKENMFSFNVEKEE-FGLKPMNCPGHCVMFAH 387

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             ++YR LP       +  R+E      G+ R R F   DA+ F    +  +   +    
Sbjct: 388 RHRTYRELPMRVADFGVLHRNEFSGALHGLTRVRRFQQDDAHIF-CREDQMEQELSGFLQ 446

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   GL    M+  + P G     E    A+                   +    
Sbjct: 447 FLDDVYEVFGLTY-EMKLSTRPEGYLGELEVWDKAEAALKSALDRSGREWKLNEGDG--- 502

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  +FD+L    + +   ++    F    ++     
Sbjct: 503 -----------------AFYGPKIDITVFDALKRRFQCATVQLD----FQLPIRF----D 537

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++   +      + +    +G++  + A++     GK   WP  ++P ++ ++ I    
Sbjct: 538 LSYVDENNSSVRPIIIHRAILGSVERMFAILTEHFAGK---WPYWLSPKQVMIVPI---S 591

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  RD C ++  +L K G     D    ++  +   A L  F   ++ G    ++  V +
Sbjct: 592 EASRDYCYEVKRQLRKAGHFAEVDVTDRKMQKKVREAQLDQFNYILVCGESEKANETVNV 651

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R   +   +  E  I     
Sbjct: 652 RTRDNKVHVIIRGETAITRFRK 673


>gi|15644753|ref|NP_206923.1| threonyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|2501057|sp|P56071|SYT_HELPY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2313207|gb|AAD07192.1| threonyl-tRNA synthetase (thrS) [Helicobacter pylori 26695]
          Length = 612

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 157/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +  +  
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEY-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 DQYKMPLKEFLNMVESKMQE 609


>gi|260662303|ref|ZP_05863199.1| prolyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260553686|gb|EEX26578.1| prolyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 573

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 165/314 (52%), Gaps = 16/314 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P L  ADLW ESGRYD+YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 61  MDKAGAVEILLPGLLPADLWKESGRYDAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A  GE  +  +       +    T F 
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGEDVIAYTDGDYAANLEKATTKFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               +    E                   +   ++   + G+E   I       S+   A
Sbjct: 241 PTKQIGEEAELTKKATP-----------GAHTVDEAAESLGLEASQILK-----SMVFLA 284

Query: 301 TFKGADGKDHYVQM 314
            F+G + K   V M
Sbjct: 285 KFEGEELKPVMVLM 298



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 12/247 (4%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG  +  +  +LAD         +  ++  + + +  +  I +  +   +      
Sbjct: 336 SLGPIG--VKEDVTILADQ------HLQGMINMALGANDDGYHYINANFNRDFKVDQFGD 387

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +    E   D LP        GIE+GHIF  GT YS    AT    +G+D  + MG Y
Sbjct: 388 FRTVQEGETAPDGLPIKFTN---GIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E + D  G++WP +VAPF I +I + A  +      E+I A L + G 
Sbjct: 445 GIGVSRLLSAISEQNADENGLVWPQAVAPFDIHVIPVNAKKEDQMAMAEEITANLEEAGY 504

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P++V VG K   +  VEIK R TG   ++  EE+   
Sbjct: 505 EVLVDDRKERAGVKFADADLIGVPIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEELATN 563

Query: 438 ASHRFSN 444
            +     
Sbjct: 564 IAILLKQ 570


>gi|330464914|ref|YP_004402657.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328807885|gb|AEB42057.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 583

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/231 (43%), Positives = 136/231 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S   L  L+++P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD V+ I+R E
Sbjct: 3   LRMSTTLLRTLRDDPADAEVPSHRLLLRAGYLRRAAPGGYTWLPLGKLVLDRVSEIVRAE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + + 
Sbjct: 63  MAAIGGQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRRGAEHLLAPTHEEMAALLVKE 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR+LP T +QIQ KFRDE RPR G++R REFLMKDAYSFDL  EG + +Y +   +
Sbjct: 123 LFTSYRDLPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDDEGLRAAYGRHRAA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF RLGL    + A SG +GG  S EF+  A  GE       D     
Sbjct: 183 YQKIFDRLGLDYTVVHAVSGAMGGSASEEFLATAAVGEDTYVGCTDCDHAA 233



 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 7/180 (3%)

Query: 264 NEKLFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             +  D  P   +      RGIE+GHIF  G +Y+   +    G  GK   + MG YGIG
Sbjct: 402 EVRPGDPCPACAQGRLTMRRGIEIGHIFQLGRRYTDAFAVDVLGPQGKPVRLTMGCYGIG 461

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VAA+ E  HD +G++WP SVAP  + L+      Q   DA   + A+L+  G  V 
Sbjct: 462 VSRAVAAIAEQHHDERGLVWPTSVAPCDVHLVAAGKGPQ--LDAAVDLGAQLAAAGLRVL 519

Query: 381 WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD  G   G +F  A+L+G P  V+VG + ++D  VE++ R TG R ++SL +++   +
Sbjct: 520 VDDRVGVSAGVKFTDAELIGIPRTVVVGRR-LADGYVELRDRATGERVELSLPDLLAQLA 578


>gi|323473769|gb|ADX84375.1| threonyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 545

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  +   KL L +    +   G+  + P GQ   + + A +RE  
Sbjct: 124 QLKDYLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREIN 182

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +   D+W  SG Y  Y  +++      D+  +  P +      I++S 
Sbjct: 183 DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGV-KPMNCPAHILIYKSK 241

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++YR+LP  F +    +R E +    G++R R F+  D + F L  +  +     +   
Sbjct: 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISK 300

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            + ++H+ G     I     + P     S E    A                        
Sbjct: 301 TVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES------------- 347

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ DSL    ++S   ++    F    ++    
Sbjct: 348 -------GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVD----FNLPERF---- 392

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W  SV   ++ ++ I   
Sbjct: 393 KLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSV---QVRVLPIT-- 447

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V 
Sbjct: 448 -DEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVT 506

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R      ++  E+ +       +  
Sbjct: 507 VRARGNIEVRNVKFEKFLELLITEIAQR 534


>gi|217031884|ref|ZP_03437386.1| hypothetical protein HPB128_3g3 [Helicobacter pylori B128]
 gi|298736935|ref|YP_003729465.1| threonyl-tRNA synthetase [Helicobacter pylori B8]
 gi|216946353|gb|EEC24958.1| hypothetical protein HPB128_3g3 [Helicobacter pylori B128]
 gi|298356129|emb|CBI67001.1| threonyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 612

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 155/443 (34%), Gaps = 44/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       E    A +   +    +  +D+ I      F     
Sbjct: 384 MKAFNFSY-EMELSTRPTKSIGDDEVWEKATSALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              I +                             R  + G I        ++ L  +  
Sbjct: 442 DIKITD--------------------------ALRRKWQCGTIQVDMNLPERFKLAFTNE 475

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +  +  V +    +G+     A++     G    +   VAP +I+LI I     V 
Sbjct: 476 H---NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV- 528

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R
Sbjct: 529 --FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDR 586

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
               +  M L+E +N    +   
Sbjct: 587 EKQDQYKMPLKEFLNMVESKMQE 609


>gi|148925913|ref|ZP_01809600.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844899|gb|EDK22003.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 576

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 9   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 69  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 129 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 189 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 248

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 249 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 290



 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 399 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 458

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A   E+SHD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 459 LAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 518

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 519 NERFGVKMNDFELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 575


>gi|325957052|ref|YP_004292464.1| prolyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325333617|gb|ADZ07525.1| prolyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
          Length = 565

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/231 (45%), Positives = 142/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++     
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNENGTYAA 231



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +     A   V NE   D 
Sbjct: 335 PVNADWADKIIADETVKDLYNVVVGAGETDYQYKNANLDRDFKVDEFADLRVANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                +G+ WP  +APF+I ++ +K +     +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTERGVAWPKEIAPFEIHIVQMKMNKDDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 514 KFADADLVGAPIRITIGKK-AADGIVEVKRPTDAKATEMSIDELDKFVNQEL 564


>gi|291440752|ref|ZP_06580142.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291343647|gb|EFE70603.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 658

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 140/441 (31%), Gaps = 40/441 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     H+L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGHELDLFS-IPEQIGSGLAVFHPKGGIVRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +  T E      +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMSEELDKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   +  P     + E    A     QV   +     P P               
Sbjct: 432 LTDFYLELSTKDPEKFVGTDEAWEEATETLRQVAEKQGLPLVPDPG-------------- 477

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG- 307
                   A      + +  D++    ++S   ++    F    ++       +  ADG 
Sbjct: 478 ------GAAFYGPKISVQAKDAIGRTWQMSTIQLD----FNLPERF----DLEYTAADGS 523

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   V +     G++    AV+   + G    W   +AP +   I I        +  EK
Sbjct: 524 KTRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIG---DAHVEHLEK 577

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A   K G  V  D   +++  +   A     P  VI G + +++  V  ++R      
Sbjct: 578 FAAAARKQGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMANGAVSFRYRDGSQEN 637

Query: 428 DMSLEEVINYASHRFSNNRPV 448
            + ++E I            V
Sbjct: 638 GIPVDEAIAKIVKVVEERAQV 658


>gi|118463800|ref|YP_882877.1| prolyl-tRNA synthetase [Mycobacterium avium 104]
 gi|152112931|sp|A0QIY9|SYP_MYCA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118165087|gb|ABK65984.1| prolyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 582

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 131/223 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  G
Sbjct: 417 SARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP SVAPF + L+ I   D   R     +   L ++G +V  DD     G +F  A+L
Sbjct: 477 LRWPASVAPFDVHLV-IANKDAQARAGATALADDLDRLGVEVLLDDRQASPGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LG P  V+VG +  +D  VE++ R  G   +++
Sbjct: 536 LGVPWIVVVG-RGWADGVVELRDRFAGQTRELA 567


>gi|254819680|ref|ZP_05224681.1| prolyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 583

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 132/223 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEGIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLKDRRGSDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFLMKDSYSFDVDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  G
Sbjct: 417 SARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP SVAPF + L+ I   D   R    ++   L ++G DV  DD     G +F  A+L
Sbjct: 477 LRWPSSVAPFDVHLV-IANKDDRARTGATELAGELDRLGVDVLLDDRQASPGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LG P  V+VG +  +D  VE++ R  G   +++
Sbjct: 536 LGVPWIVVVG-RGWADGVVELRDRFGGQTRELA 567


>gi|161760548|ref|NP_907033.2| threonyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
          Length = 602

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 152/444 (34%), Gaps = 46/444 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L          G+  WLP G +    + A++ E   R  
Sbjct: 197 YLHQMEEAKKRDHRKVGTEMGLFI-FDEDVGAGLPIWLPAGARLRRRLEAMLTEAHIRRN 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +DLW  SG Y +Y + M      ++      P +      ++ S ++SY
Sbjct: 256 YEPVRGPEILKSDLWKISGHYQNYKENMY-FTKIDEVEYGIKPMNCVGHIKVYGSGVRSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  FY+  +  R E      G++R REF   DA+ F   PE  K     +     +I
Sbjct: 315 RELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPEQIKDEVVDIVHFVDKI 373

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
               G     M   + P   IG +   E    A     +    +  +D    +      D
Sbjct: 374 MSAFGFNY-EMEISTRPEKSIGDEAIWEKGTQALKEALEAQGLQYGIDEGGGAFYGPKID 432

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I   ++I                               R  + G +              
Sbjct: 433 IKITDAIG------------------------------RKWQCGTV-QIDMNLPERFELA 461

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +      V +    +G+     A++     G+   +   +AP  ++++ I    + 
Sbjct: 462 YTDENNTPQRPVMIHRAILGSFERFVAILTEHFGGEFPFF---IAPTPVAIVPIG---EE 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + +   L KVG      D  E +  +    +    P+ V++G + V++ KV I+ 
Sbjct: 516 QLEYAKHLRLELQKVGVYAEIHDKNETLNKKIRTVEKQRVPMIVVLGEREVNEKKVAIRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    + ++   E I  A  + S 
Sbjct: 576 RREKRQYELGEAEFIQLAKEKMSE 599


>gi|189091896|ref|XP_001929781.1| hypothetical protein [Podospora anserina S mat+]
 gi|27803058|emb|CAD60761.1| unnamed protein product [Podospora anserina]
 gi|188219301|emb|CAP49281.1| unnamed protein product [Podospora anserina S mat+]
          Length = 783

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 155/486 (31%), Gaps = 67/486 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD  +   +         + S G   WLP G +  + +   I+EE
Sbjct: 304 MAAHKKFL--EEAAKRDHRLIGKQ--QELFYFEECSPGSAMWLPHGMRIHNAIMDYIKEE 359

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + +  LW +SG    Y ++M  L D + +     P +      +FR 
Sbjct: 360 YWARGYDEVMTPNMFNVSLWEQSGHLAHYKEDMF-LLDVDKEQFGLKPMNCPAHAMMFRH 418

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S++ LP       +  R+E      G+ R R F   DA+ F    +  K     +F 
Sbjct: 419 RERSHKELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-CREDQIKEEVADLFD 477

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              + +  LGL    ++  + P       E    A++   +        D          
Sbjct: 478 FMRKFYGILGLTF-KLKLSTRPEKFLGEIETWDRAESRLKEALDEFAASD---------- 526

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---- 295
                     E      A      +  + D L    + +   ++      F  +Y     
Sbjct: 527 ---KDGGVSWELNPGDGAFYGPKIDIAVLDCLNRPWQCATIQLDFQQPQNFSLEYQTGEA 583

Query: 296 --------------------------------LPMSATFKGADGKDHYVQMGSYGIGAMR 323
                                            P+      + G    V +     G++ 
Sbjct: 584 VHKGETKAAVEEPAPPAPEAEAEKDKDGKEKKKPLLIKKALSPGCARPVMIHRAMAGSIE 643

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A++     GK   WP  ++P ++ +I +        D  +++ A L K       D 
Sbjct: 644 RFTAILAEHFAGK---WPFWMSPRQVIVIPVGMG---FLDYAKEVAALLKKEKFYADVDS 697

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--DMS--LEEVINYAS 439
            G  +  +     L  +    +VG   + + KV I++R     +  D+   L+E I    
Sbjct: 698 SGNTLQKKIRNGQLAQYNFVFVVGDDEMRNRKVNIRYRDDTSTQARDVPFDLDEAIQKLR 757

Query: 440 HRFSNN 445
              SN 
Sbjct: 758 QLKSNR 763


>gi|38234063|ref|NP_939830.1| prolyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|81829888|sp|Q6NGM7|SYP_CORDI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|38200325|emb|CAE50010.1| prolyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 585

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  V  ++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGVYTWLPLGLRTLRKVETVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + + ++ R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQELLFPALLPREPYEQTHRWTEYGDSLFRLKDRKGGDYLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD++  G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMSDAGLEDSYQRHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RI  RLG++ +   A SG +GG  S EF+ ++D GE     +
Sbjct: 184 QRILDRLGVEYVICAATSGAMGGSASEEFLAVSDNGEDTFVRA 226



 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KY+           GK     MGSYGIG  R++A + E  HD  G+ 
Sbjct: 423 RGIEVGHIFQLGRKYTEAFDVQILDESGKRAIPTMGSYGIGVSRLMAVLAEQRHDETGLN 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP+++ ++ +   D+   +A + + A L   G +V +DD  +   G +F  A+LL
Sbjct: 483 WPLEVAPYQVHVV-VANKDKEAIEAGDALVAALDSHGIEVLFDDRPKVSPGVKFKDAELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  V++G +   D  +E++ R       +S +E+++    + +
Sbjct: 542 GMPFVVVLG-RAFKDGNIELRERG-QETVLVSADEIVDTVVAKLN 584


>gi|269795047|ref|YP_003314502.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Sanguibacter
           keddieii DSM 10542]
 gi|269097232|gb|ACZ21668.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Sanguibacter
           keddieii DSM 10542]
          Length = 676

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 147/462 (31%), Gaps = 56/462 (12%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +K  L    E   +AE   H+     L L +    +   G+  + P G      +    R
Sbjct: 248 TKDELKAHLERLAEAERRDHRRLGSELDLFS-FPDEIGSGLAVFHPKGGIIRSEMEQYSR 306

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIY 106
           +     G   ++ P +    L++ SG  D Y   M      +++                
Sbjct: 307 KRHVEEGYSFVNTPHITKEQLFLTSGHLDWYADGMYPPMHLDEEVDADGTVRKAGQNYYL 366

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   IF S  +SYR LP   ++    +R E      G+ R R F   DA+ +  
Sbjct: 367 KPMNCPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLARGRGFTQDDAHIY-C 425

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCS 224
           T E  K          L +    GL    +   +  P     + +    A     +V  +
Sbjct: 426 TREQMKDELTTSLNFVLGLLKDYGLDDFYLELSTRDPEKSVGTDDAWEEATRTLEEVAVA 485

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 P P                       A      + +  D++    ++S   ++ 
Sbjct: 486 SGLDLVPDPG--------------------GAAFYGPKISVQAKDAIGRTWQMSTIQLD- 524

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
              F    K+ L  +A    ADG     V +     G++    AV+   + G    W   
Sbjct: 525 ---FNLPEKFDLEFAA----ADGTRQRPVMIHRALFGSIERFFAVLTEHYAGAFPAW--- 574

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++  + +    +   D    + A+L K G     DD  ++   +   A     P  
Sbjct: 575 LAPVQVLAVPVA---EPFNDYLADVVAQLRKAGVRADLDDSSDRFAKKIRTASTQKIPFV 631

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +I G +      V  ++R       + + E I        + 
Sbjct: 632 LIAGGEDAEAGAVSFRYRDGRQENGVPVAEAIERVLAAVRDR 673


>gi|187921760|ref|YP_001890792.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|187720198|gb|ACD21421.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 404

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 153/429 (35%), Gaps = 45/429 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L      +   G+  W P G +    +   +R    R G  E+  P L +
Sbjct: 5   DHRVIGNKLDLFHQ--QEEGVGMVFWHPRGWELYRVLEVYVRARMRRAGFREIRTPQLLA 62

Query: 77  ADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             LW +SG ++ +G  M  LAD    +A+   P        +F   ++SYR LP  + + 
Sbjct: 63  RSLWEKSGHWEKFGAAMYSLADAEEGRALCLKPMSCPCHVQVFNQRVRSYRELPVRYSEF 122

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               RDE      G+ R+R F+  DA+ F  T    +    +       ++  LG     
Sbjct: 123 GACHRDEPSGSLEGLKRTRAFVQDDAHVF-CTEAQIEVEVGRFCALLRTVYADLGFPRFK 181

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P       +    A+        +       +  E   +   +  + +  +   
Sbjct: 182 VALATRPAMRAGDDQTWDRAEDALANAARAAGLEFEVLEGEGAFYGPKLEFHLLDSR--- 238

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA-DGKDHY 311
                                   AR  + G I      + LP  + A F    + ++  
Sbjct: 239 ------------------------ARSWQCGTI---QLDFVLPERLDAEFVNERNERERP 271

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+M    A++   H+G   +W   +AP ++ +  I    +  R   +++   
Sbjct: 272 VMIHHAVLGSMERFIAMLLEHHEGWLPVW---LAPEQVVVATI---SETNRAYAQEVMQA 325

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G     D   E++  +   A     PL V+VGS+   D  + I+ R  G +  +S 
Sbjct: 326 LDDAGVRAVLDSRPERLEKKIVDAREKQVPLLVVVGSRDERDQTISIRLRD-GRQMTVSF 384

Query: 432 EEVINYASH 440
            E +     
Sbjct: 385 VEAVERLRS 393


>gi|41409011|ref|NP_961847.1| prolyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|81831677|sp|Q73VU8|SYP_MYCPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41397370|gb|AAS05230.1| ProS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 582

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 131/223 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  G
Sbjct: 417 SARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP SVAPF + L+ I   D   R     +   L ++G +V  DD     G +F  A+L
Sbjct: 477 LRWPASVAPFDVHLV-IANKDAQARAGATALADDLDRLGVEVLLDDRQASPGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LG P  V+VG +  +D  VE++ R  G   +++
Sbjct: 536 LGVPWIVVVG-RGWADGVVELRDRFAGQTRELA 567


>gi|315038578|ref|YP_004032146.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312276711|gb|ADQ59351.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 565

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/231 (45%), Positives = 142/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++     
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNENGTYAA 231



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +     A   V NE   D 
Sbjct: 335 PVNADWADKIIADETVKDLYNVVVGAGETDYQYKNANLDRDFKVDEFADLRVANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                +G+ WP  +APF+I ++ +K +     +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTERGVAWPKEIAPFEIHIVQMKMNKDDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 514 KFADADLVGAPIRITIGKK-AADGIVEVKRPTDAKATEMSIDELDKFVNQEL 564


>gi|239932385|ref|ZP_04689338.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 653

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 140/441 (31%), Gaps = 40/441 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     H+L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 249 EAEKRDHRKLGHELDLFS-IPEQIGSGLAVFHPKGGIVRRVMEDYSRRRHEEEGYEFVYT 307

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 308 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 367

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +  T E      +K     L +    G
Sbjct: 368 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMSEELDKTLTFVLNLLRDYG 426

Query: 190 LKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   +  P     + E    A     QV   +     P P               
Sbjct: 427 LTDFYLELSTKDPEKFVGTDEAWEEATETLRQVAEKQGLPLVPDPG-------------- 472

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG- 307
                   A      + +  D++    ++S   ++    F    ++       +  ADG 
Sbjct: 473 ------GAAFYGPKISVQAKDAIGRTWQMSTIQLD----FNLPERF----DLEYTAADGS 518

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   V +     G++    AV+   + G    W   +AP +   I I        +  EK
Sbjct: 519 KTRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIG---DAHVEHLEK 572

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A   K G  V  D   +++  +   A     P  VI G + +++  V  ++R      
Sbjct: 573 FAAAARKQGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMANGAVSFRYRDGSQEN 632

Query: 428 DMSLEEVINYASHRFSNNRPV 448
            + ++E I            V
Sbjct: 633 GIPVDEAIAKIVKVVEERAQV 653


>gi|289705559|ref|ZP_06501951.1| threonine--tRNA ligase [Micrococcus luteus SK58]
 gi|289557788|gb|EFD51087.1| threonine--tRNA ligase [Micrococcus luteus SK58]
          Length = 672

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 141/463 (30%), Gaps = 55/463 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L   QE   +AE   H+ +     +     +   G+  + P G      +    R
Sbjct: 241 ASKDDLKAYQERLAEAERRDHRKLGAELDLFSFPDELGSGLPVFHPRGGIIRKEMEDYSR 300

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-------------RNDKAMI 105
                 G   +  P +    L+  SG  D Y   M                  R  +   
Sbjct: 301 RRHTEAGYEFVYTPHITKQHLYEVSGHLDWYADGMFPPMHIDEVRDPETGEITRQGQNYY 360

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFD 164
             P +  +   I+RS  +SYR LP   ++    +R E      G+ R R     DA+ + 
Sbjct: 361 LKPMNCPMHNLIYRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY- 419

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFC 223
            T E  K          L +    GL    +   +  P     S E    A     +V  
Sbjct: 420 CTREQMKEELTTTLNFVLDLLKDYGLNDFYLELSTKDPEKFVGSDEIWEEATRTLAEVAE 479

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +      P P                       A      + +  D++    ++S   ++
Sbjct: 480 ASGLQLVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD 519

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
               F    ++       ++ ADG     V +     G++     V+   + G    W  
Sbjct: 520 ----FNLPERF----DLEYQAADGTRQRPVMIHRALFGSIERFLGVLTEHYAGAFPAW-- 569

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP ++  I +    +   D  + + A+L   G     DD  ++   +   A     P 
Sbjct: 570 -LAPEQVVAIPVA---EAFNDYLDDVVAKLRAEGIRARLDDSSDRFPKKIRTAAKEKAPF 625

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +I G +    + V  + R       + +EE I          
Sbjct: 626 VLIAGGEDREANAVSFRFRDGTQDNGVPVEEAIERIVKAVRER 668


>gi|157165430|ref|YP_001465955.1| threonyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|171855003|sp|A7ZAZ7|SYT_CAMC1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112801821|gb|EAT99165.1| threonyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 606

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  + I++E   RD      ++ L T    +   G+  WLP G +    +  ++ +    
Sbjct: 199 KEHIRIIEEAKKRDHRKLGVEMKLFT-FDEEVGGGLPIWLPNGGRLRSKLEQLLYKAHRD 257

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD+W  SG Y +Y + M      ++      P +      +++S I+
Sbjct: 258 RGYEPVRGPELLKADVWRRSGHYANYKENMY-FTTIDETEYGIKPMNCVGHIKVYQSDIR 316

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   D++ F + P   K +  ++     
Sbjct: 317 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCM-PSQIKENILEILKFAG 375

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    G     M   + P       E    A     +      F           +   
Sbjct: 376 TIMENFGFHY-EMEISTKPAKAIGGDEIWDTATKALKEALDENGFKYGIDEGGGAFYGPK 434

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 435 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPERFDL 464

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  A+ +    V +    +G+      ++     G+    P  +AP ++ ++ I     
Sbjct: 465 GYIDANNERQRPVMLHRALLGSFERFIGILLEHTAGE---LPFFIAPTQVVIVPI---SD 518

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  ++I   L K+  D       E +  +   A+    P+ V++G   V++  V ++
Sbjct: 519 AHLDYAKEISRELRKINVDSEIASKNESLNKRIRTAEKQRVPMIVVLGDNEVANKSVALR 578

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    + DMSL E +N    + S 
Sbjct: 579 DRQARTQSDMSLAEFVNLTKEKLSE 603


>gi|254776130|ref|ZP_05217646.1| prolyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 582

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 131/223 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIEV HIF  G KY+   +A   G DGK   + MGSYG+G  R+VA + E  HD  G
Sbjct: 417 SARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGLGVSRMVAVIAEQHHDELG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP SVAPF + L+ I   D   R     +   L ++G +V  DD     G +F  A+L
Sbjct: 477 LRWPASVAPFDVHLV-IANKDAQARAGATALADDLDRLGVEVLLDDRQASPGVKFKDAEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LG P  V+VG +  +D  VE++ R  G   +++
Sbjct: 536 LGVPWIVVVG-RGWADGVVELRDRFAGQTRELA 567


>gi|327183775|gb|AEA32222.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 565

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/231 (45%), Positives = 142/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++     
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNENGTYAA 231



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +     A   V NE   D 
Sbjct: 335 PVNADWADKIIADETVKDLYNVVVGAGETDYQYKNANLDRDFKVDEFADLRVANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                +G+ WP  +APF+I ++ +K +     +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTERGVAWPKEIAPFEIHIVQMKMNKDDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 514 KFADADLVGAPIRITIGKK-AADGIVEVKRPTDAKATEMSIDELDKFVNQEL 564


>gi|295426319|ref|ZP_06818978.1| proline--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295063992|gb|EFG54941.1| proline--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 566

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/225 (44%), Positives = 138/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLMLR G I Q + G+YS+LPLG + L     I+ +E
Sbjct: 1   MRQSKFFMPTLKEAPADAVAESHKLMLRGGYIRQVTAGVYSYLPLGFRVLRKAENIMEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P    A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMMMPHFLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M DAYSF  T E     ++    +
Sbjct: 121 NLKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDAYSFAATREQLDEQFDDEKRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  ++ R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 FENVYRRCGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 109/233 (46%), Gaps = 3/233 (1%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  V        + +     + D      ++   +     A     NE   D 
Sbjct: 335 PVNADWADKIVADDTVKNLYNVVVGAGETDYQFENANLDRDFKVDEFADIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E
Sbjct: 395 VDHEPLKFTTSIEVGHIFKLGTYYTKTMGADFLDNNGKAKPVIMGSYGIGVTRMLSAVVE 454

Query: 331 SS-HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               +  GI WP  +APF I LI +K ++       EK+   LS    DV +DD  E+ G
Sbjct: 455 QHLTNHGGIAWPKEIAPFSIHLIQMKMNNDEQTQLAEKLEKELS-AKYDVLYDDRKERPG 513

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +F  ADL+G P+++ +G K  +D  VE+K        ++S++++ +Y +   
Sbjct: 514 VKFNDADLVGAPVRITIGRK-AADGIVEVKRPNDDKATEISVDQLNDYLTKEL 565


>gi|290961808|ref|YP_003492990.1| threonine-tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260651334|emb|CBG74456.1| threonine-tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 658

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 144/450 (32%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    +   +AE   H+ +     +     Q   G+  + P G      +    R 
Sbjct: 241 SKEELKAHLDFLAEAEKRDHRKLGNELDLFSIPDQIGSGLAVFHPKGGIIRRVMEDYSRR 300

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+  SG  D Y   M               P +  +   IF
Sbjct: 301 RHEEEGYEFVYTPHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIF 360

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      +K 
Sbjct: 361 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTKEQMAEELDKT 419

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    +     QV   +  +  P P   
Sbjct: 420 LTFVLNLLRDYGLTDFYLELSTKDPEKFVGSDEIWEESTETLRQVAEKQGLLLVPDPG-- 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + ++ D++    ++S   ++    F    ++  
Sbjct: 478 ------------------GAAFYGPKISVQVKDAIGRTWQMSTVQLD----FNLPERF-- 513

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + G DG K   V +     G++    AV+   + G    W   +AP +   I I 
Sbjct: 514 --DLEYTGPDGSKQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIG 568

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  +K  A   + G  V  D   +++  +   A     P  VI G + ++   
Sbjct: 569 ---DAHVEYLQKFAAEAKRKGLRVDVDASSDRMQKKIRNAQKAKVPFMVIAGDEDMAAGA 625

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       + +EE I   +    + 
Sbjct: 626 VSFRYRDGSQENGIPVEEAIAKIAKVVEDR 655


>gi|288818560|ref|YP_003432908.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288787960|dbj|BAI69707.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752150|gb|ADO45633.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 569

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 109/227 (48%), Positives = 148/227 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YF    +E P DAE  SHK +L+ G I Q + GIY++ P G + L  +  I+R+E
Sbjct: 1   MRWSTYFWYTSKEEPADAEAPSHKYLLKGGFIKQVASGIYAFTPAGYRVLKKIENIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L  A+LW E+GR+D YG+E+  L DR+ +    GPTHEE +TD+ R+
Sbjct: 61  MDRSGAQELLLTVLNPAELWRETGRWDLYGRELFTLKDRHGRDYCLGPTHEEEITDMVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LPF  YQIQ+KFRDE RPRFG++R REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 FVNSYRQLPFILYQIQVKFRDEKRPRFGLIRGREFIMKDAYSFDTDEFSALMSYETMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF +L LK++ + A  G IGG  SHEF++L D GE +V   +  
Sbjct: 181 YERIFKKLRLKTLMVEASVGAIGGMSSHEFVILTDYGEARVAYCESC 227



 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 4/230 (1%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           +V                +  D   +N+        Y    DV      D  P+      
Sbjct: 342 RVIWDNSVYGIKNAVVAFNEPDYHYINA-NPGRDFSYGEFFDVAQVVEKDPCPKCGAPLK 400

Query: 280 --RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +G+E+GHIF  GT+YSLPM A +K   G+D  + MG YGIG  R ++A++E   D  G
Sbjct: 401 VSKGLELGHIFLLGTRYSLPMKAFYKDQQGEDKPIYMGCYGIGISRCMSAIVEQYSDELG 460

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I WP  VAPF++++I +   D   +   EKIY +  ++G DV +DD     G +FA ADL
Sbjct: 461 IKWPTVVAPFELNVICLNPSDAEQKTVAEKIYYQAQEMGLDVIYDDREASAGFKFADADL 520

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            GFP +++VG K   + KVE++ R TG + D+ +E+ +         ++ 
Sbjct: 521 CGFPYRIVVGKKT-KEGKVELQKRHTGEKLDVPIEDAVRIVKEFVDKDKE 569


>gi|167005199|ref|ZP_02270957.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 568

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 154/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR     + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKKNEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 241 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 282



 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 391 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 451 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 510

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 511 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREDLVKELIKTDELMEILKKKV 567


>gi|222480176|ref|YP_002566413.1| threonyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453078|gb|ACM57343.1| threonyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 649

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 145/438 (33%), Gaps = 40/438 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      ++ L + +      G+  + P G+  L  ++    E     G  E+ 
Sbjct: 241 EEALERDHRKIGQEMNLFS-IPTVTGPGLPLYHPPGKTVLRELSNFANELNRENGYEEVE 299

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +   +LW +SG Y++Y  +M  L D ND+     P +      IF     SYR+LP 
Sbjct: 300 TPHVFRTELWKKSGHYENYKDDMF-LLDVNDEEYGLKPMNCPGHATIFDQQSWSYRDLPQ 358

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            +++    +R E R    G+ R   F + D + F + P+  +     +      +   L 
Sbjct: 359 RYFENGKVYRKEQRGELSGLSRVWSFTIDDGHLF-VRPDQIRQEIESVIEMIFEVVETLD 417

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L  + +   + P       E    A+     V  S  +     P +              
Sbjct: 418 LD-VEVALATRPDKSVGGDEIWESAEEQLRDVLESGGYEYDVEPGDG------------- 463

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  A      +    D+L          ++                 T+ G D +D
Sbjct: 464 -------AFYGPKIDFGFEDALGRVWDGPTVQLDFNMPDR--------FDLTYTGEDNED 508

Query: 310 H-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H  V +     G+      V+    DG   +W   +AP ++ ++ +            ++
Sbjct: 509 HQPVMIHRALYGSYERFFMVLIEHFDGDFPLW---LAPEQVRILPV---SDETLGYAHRV 562

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L   G  V  +D    +G +         P  VIVG        V ++ R    R D
Sbjct: 563 KNELEDAGFRVEVEDRDWTVGRKIRAGHDDRLPYMVIVGEDEQEAGTVSVRDRFENQRGD 622

Query: 429 MSLEEVINYASHRFSNNR 446
           + L+  +++        R
Sbjct: 623 VDLDAFVDHLVAERDEKR 640


>gi|317010401|gb|ADU84148.1| threonyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 612

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 149/443 (33%), Gaps = 44/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +                  +   I 
Sbjct: 384 MKAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALKEHHINYKIDEGGGAFYGPKID 442

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
           +                                  R  + G I        ++ L  +  
Sbjct: 443 IKITD---------------------------ALRRKWQCGTIQVDMNLPERFKLAFTNE 475

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +  +  V +    +G+     A++     G    +   VAP +I+LI I    +  
Sbjct: 476 H---NNAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEH 526

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R
Sbjct: 527 HGFALKLKEELKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEMLSIRDR 586

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
               +  M L+E +N    +   
Sbjct: 587 EKQTQYKMPLKEFLNMVESKMQE 609


>gi|296228691|ref|XP_002759919.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 1
           [Callithrix jacchus]
          Length = 718

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 153/454 (33%), Gaps = 58/454 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +     A +  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 286 LLRAWEAWREKAGLQDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 345

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 346 RGFFEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPASSQSDHSTRHTTDTLALK 405

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 406 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLCGLTRLRCFQQDDAHIFCTT 465

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G                       
Sbjct: 466 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSG-----------------FLGDPC 506

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             D           +      +     A Y    DVH   L D+L    +     ++   
Sbjct: 507 LWDQAEQVLQQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD--- 560

Query: 287 IFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 561 -FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCRGK---WPLWLS 612

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I +    +   +   +    L   G     D D    +  +   A L  +  Q 
Sbjct: 613 PFQVVVIPVGTEQE---EYARETQQSLQAAGLVCDLDADSRLTLSRRIRRAQLAHYNFQF 669

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +VG K  S S V I+ R   +  + SL E +   
Sbjct: 670 VVGQKEQSKSTVNIRTRDNRLLGEWSLPEAVQRL 703


>gi|260903858|ref|ZP_05912180.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Brevibacterium
           linens BL2]
          Length = 668

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/470 (17%), Positives = 149/470 (31%), Gaps = 59/470 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L   Q+   +AE   H+ +     +     +   G+  + P G      +   +R
Sbjct: 234 ASKEDLKAHQDRLAEAERRDHRKLGAELDLFSFPEELGSGLPVFHPKGGVIKREMEDYVR 293

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIY 106
                 G   +  P +    L+  SG    YG+ M      ++                 
Sbjct: 294 ARHIEEGFEYVGTPHISKEALYYTSGHLPYYGENMFPPISVDEVRDESGEIVKEGTPYRL 353

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP   ++    +RDE      G+ R R     D++S+  
Sbjct: 354 KAMNCPMHNLIFRSRGRSYRELPLRLFEFGTVYRDEASGVVHGLTRVRALTQDDSHSYVA 413

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------LSHEFIVLADTGET 219
             E +      +    L +    GL    +   +    G        S E    A     
Sbjct: 414 -QEDAAKEIRHLLEFVLSLLRDFGLNDFYLELSTRDEDGKKKDKFIGSDEQWAEATQVLE 472

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           +V         P P                       A      + +  D++    ++S 
Sbjct: 473 EVASETGLELVPDPG--------------------GAAFYGPKVSVQARDAIGRTWQMST 512

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
             ++      FG +Y        + ADG +   V + S   G++     V+   + G   
Sbjct: 513 VQLDFNQPERFGLEY--------QAADGTRKQPVMIHSAKFGSIERFMGVLIEHYAGAFP 564

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +W   +AP +++ I +    +   D   ++ A+L   G  V  DD  ++   +   A   
Sbjct: 565 VW---LAPVQVTCIPVA---EEFNDYLAEVAAQLKAAGVRVEIDDSDDRFPKKIRNASKS 618

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             P  +I G      + V  + R       +S+ E ++           V
Sbjct: 619 KVPFVLIAGGDDRDANAVSFRFRDGEQDNGVSVAEAVSRIVESIETKAQV 668


>gi|302206413|gb|ADL10755.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330969|gb|ADL21163.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276656|gb|ADO26555.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           I19]
          Length = 585

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 149/282 (52%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSALFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLKKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DGIGAQELLFPALLPREPYQATNRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T +G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDDGLESSYQRHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI  RLG++     A SG +GG  S EF+ +++ GE     +                 
Sbjct: 184 QRILDRLGVEYAICSATSGAMGGSASEEFLAISENGEDTFVRATQGNYAANVEAV----- 238

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +            P A   D  N +  DSL    + +   IE
Sbjct: 239 VTQPGVERSIEGLPEAKEYDTPNSETIDSLVAWAQNAGITIE 280



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KY+          +GK     MGSYGIG  R++A + E  HD KG+ 
Sbjct: 423 RGIEVGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGVSRLMAVLAEQRHDEKGLN 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAPF + ++ +   D    +A + + + L   G +V +DD  +   G +F  A+LL
Sbjct: 483 WPIEVAPFAVHVV-VANKDTAAIEAGDALVSELDAAGVEVLFDDRPKVSPGVKFKDAELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P  V++G +   + KVE++ R      ++   E     
Sbjct: 542 GMPYVVVLG-RSFKEGKVELRVRGE-EAVEIPAAEAAARI 579


>gi|284173635|ref|ZP_06387604.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|261600981|gb|ACX90584.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 545

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  +   KL L +    +   G+  + P GQ   + +   +RE  
Sbjct: 124 QLKDYLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTLRNELITFMREIN 182

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +   D+W  SG Y  Y  +++      D+  +  P +      I++S 
Sbjct: 183 DSMGYQEVYTSHVLKTDIWKISGHYTLYRDKLIVFNMEGDEYGV-KPMNCPAHILIYKSK 241

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++YR+LP  F +    +R E +    G++R R F+  D + F L  +  K     +   
Sbjct: 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LKEDQLKEEIKMLISK 300

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            + ++H+ G     I     + P     S E    A                        
Sbjct: 301 TVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES------------- 347

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ DSL    ++S   ++    F    ++    
Sbjct: 348 -------GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVD----FNLPERF---- 392

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W   ++P ++ ++ I   
Sbjct: 393 KLEYIDKDGTKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW---LSPVQVKVLPIT-- 447

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+   + K       D  GE +  +   A   G P  +IVG K  S   V 
Sbjct: 448 -DEVNEYAEKVLNDMRKRRIRAEIDYAGETLSRRIKNAYDQGVPYILIVGKKEASQGTVT 506

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R      ++  E+ ++      +  
Sbjct: 507 VRARGNIEVRNVKFEKFLDLMITEITQR 534


>gi|66821029|ref|XP_644046.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|75016778|sp|Q8MP20|SYTC2_DICDI RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21240667|gb|AAM44378.1| hypothetical protein [Dictyostelium discoideum]
 gi|60472212|gb|EAL70165.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 698

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/454 (15%), Positives = 157/454 (34%), Gaps = 48/454 (10%)

Query: 13  ENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E  + A +  H+++ +       H  S G   +LP G K  + +   +R E  + G  E+
Sbjct: 273 EIQKIAALRDHRVIGKDQELFFFHPFSPGSCFFLPHGTKIYNKLLQFLRLEYRKRGYQEV 332

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +  LW  SG +D+Y   M      + +     P +      ++    +SY+ LP
Sbjct: 333 ISPNIYNQKLWETSGHWDNYKDNMFSFECDHTQYS-LKPMNCPGHCLMYAHRARSYKELP 391

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E      G+ R R F   DA+ F  TP+  +    +       ++   
Sbjct: 392 MRIADFGVLHRNETHGSLSGLTRVRRFQQDDAHIF-CTPDMIREEIKQCLDFMKYVYTIF 450

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                 +   + P            A+T  +QV        + I   +  F         
Sbjct: 451 NFTF-HLELSTRPDSYLGELSVWEKAETSLSQVLTEFCGDKWTINHGDGAFYG------- 502

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                          +  L D+  +N + +   ++      F  +YS  ++      +  
Sbjct: 503 ------------PKIDIHLKDANGKNHQCATIQLDFQLPIRFNLEYSGGLNNNNNNNNNN 550

Query: 309 ------------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                       +  V +     G++  + A++     GK   WP  ++P +  +I +  
Sbjct: 551 EEINDNNNNNSLNRPVMIHRALFGSVERMMAILMEHTAGK---WPFWLSPRQCIVIPVSN 607

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                    ++I ++++  G DV  D    + +  +   A +  +   ++VG + +  + 
Sbjct: 608 K---FNQFAQEIQSKINLAGYDVDVDLNDSKLLSKKIREATVSQYNYIIVVGQEEIDTNI 664

Query: 416 VEIKHRL---TGIREDMSLEEVINYASHRFSNNR 446
           + ++ R       +  +SL ++ +         +
Sbjct: 665 LNVRKRDLPEDNKQVKLSLNDLFSEFKLNIEQFK 698


>gi|225021160|ref|ZP_03710352.1| hypothetical protein CORMATOL_01172 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946067|gb|EEG27276.1| hypothetical protein CORMATOL_01172 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 584

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 136/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  ++REE 
Sbjct: 4   RLSSLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLRKIEKVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L S + + ++ R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  DHIGAQELLFPALLSREPYEQTRRWTEYGDNLFRLKDRKGNDMLLGPTHEEMFARQVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY     +Y
Sbjct: 124 FTSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEQSYLAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             IF RL L+    +A SG +GG  S EF+ ++  GE     +
Sbjct: 184 QAIFDRLNLEYAICKATSGAMGGSASEEFLAISPNGEDTFVRA 226



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+           GK     MGSYGIG  R+V  + E  HD  G+ 
Sbjct: 422 RGIEIGHIFQLGRKYTEVFDVQILDEHGKRAIPTMGSYGIGVSRLVGVIAEQHHDDNGLN 481

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAP+++ ++ +   D+    A + I  +L   G +V +DD  +   G +F  ++LL
Sbjct: 482 WPVEVAPYQVHVV-VANKDKAALAAGDDIVVQLDAAGVEVLFDDRPKVSPGVKFKDSELL 540

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  V++G +  S+  VE++ R  G   ++   ++++  +   
Sbjct: 541 GMPYIVVLG-RSFSNGIVELRIRG-GETLEVPATDIVDTVTKLI 582


>gi|238618767|ref|YP_002913592.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259516721|sp|C4KKV9|SYT_SULIK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238379836|gb|ACR40924.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 545

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 156/448 (34%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  +   KL L +    +   G+  + P GQ   + + A +RE  
Sbjct: 124 QLKDYLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREIN 182

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +   D+W  SG Y  Y  +++      D+  +  P +      I++S 
Sbjct: 183 DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGV-KPMNCPAHILIYKSK 241

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++YR+LP  F +    +R E +    G++R R F+  D + F L  +        +   
Sbjct: 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLMEEIKMLISK 300

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            + ++H+ G     I     + P     S E    A                        
Sbjct: 301 TVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES------------- 347

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ DSL    ++S   ++    F    ++    
Sbjct: 348 -------GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVD----FNLPERF---- 392

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W  SV   ++ ++ I   
Sbjct: 393 KLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSV---QVRVLPIT-- 447

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V 
Sbjct: 448 -DEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVT 506

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R      ++  E+ +       +  
Sbjct: 507 VRARGNIEVRNVKFEKFLELLITEIAQR 534


>gi|121612398|ref|YP_001000243.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|152016593|sp|A1VYQ2|SYP_CAMJJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87250412|gb|EAQ73370.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 569

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 154/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR     + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKKNEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 452 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREDLVKELIKTDELMEILKKKV 568


>gi|226324133|ref|ZP_03799651.1| hypothetical protein COPCOM_01911 [Coprococcus comes ATCC 27758]
 gi|225207682|gb|EEG90036.1| hypothetical protein COPCOM_01911 [Coprococcus comes ATCC 27758]
          Length = 481

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 157/412 (38%), Gaps = 66/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    + + A + +    TG   + +P L   +L   ES   + +  E+  
Sbjct: 38  KGCLNYLPNGYAIWEKIQADLDKRFKETGVENVYLPMLIPENLLQKESDHIEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +   + M   PT E +  D++   ++SYR+LP  + Q     R E +     +R
Sbjct: 98  VTKGGLETLQEPMCIRPTSETLFCDLWARTVQSYRDLPKVWNQWCSVLRWE-KTTRPFLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E ++     M    LR++  L   S+ +   SGP          
Sbjct: 157 SREFLWQEGHTIHATYEEAEQRTLTM----LRVYQELIRDSLAIPFVSGP---------- 202

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E++ F                                                 
Sbjct: 203 ----KTESEKFAGAQDTYTVEA-------------------------------------- 220

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++     +FG  +       +   + + H V   S+G+ + R++ A+I  
Sbjct: 221 ---LMHDGKALQSATSHFFGNAFPDAFDIKYLDKNNELHSVYETSWGL-STRIIGALIMV 276

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  +AP +  +I I  H +   +   ++  RL K G  V  DD  +  G +
Sbjct: 277 HGDDSGLVLPPRIAPVQTRVIPIAQHKEGVLEKANELTERLKKAGYSVKIDDSEKSPGWK 336

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F+  ++LG P ++ +G K +  ++V +  R T  +  +SL+E+         
Sbjct: 337 FSEQEMLGIPTRIEIGPKDIEQNQVVVVRRDTREKIVVSLDEIETKLGEILE 388


>gi|183602502|ref|ZP_02963867.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683545|ref|YP_002469928.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|254782886|sp|B8DTM3|SYP_BIFA0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183218143|gb|EDT88789.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621195|gb|ACL29352.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 599

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/281 (35%), Positives = 154/281 (54%), Gaps = 1/281 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE N
Sbjct: 1   MSTLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T   + 
Sbjct: 181 RIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALHTPAVEA 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +  +   +           + +E +  +  E  R   R  +
Sbjct: 241 VDCSQTPDATKRATPNARTI-DEMIAFANAEYPREDGRDWQ 280



 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 6/253 (2%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +R   GP+G            T ET  +     +           ++ +    +V     
Sbjct: 347 VRGYIGPMGFGPQARGDDG--TAETLRYLIDAHVAEGSAWFTGADEEGVDYYDLVYGRDF 404

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V
Sbjct: 405 KADDVVEAVQVRDGDMSPDGSGPLSFERGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPV 464

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RV+A + E+ HD KG+ WP ++AP ++ ++     D+   +A E++   L
Sbjct: 465 WMGCYGIGVSRVLACIAETHHDDKGLAWPMNIAPAQVHVMA-TGKDEAAFEAAERLVDEL 523

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           S  G +V +DD  +   G +F  A+L+G P+  + G   V++  +E++ R     E++S+
Sbjct: 524 SANGIEVLYDDRRKVSPGVKFKDAELIGVPIIAVAGRDTVNNGTIEVRDRDGSNSENISV 583

Query: 432 EEVINYASHRFSN 444
           + V      R   
Sbjct: 584 DSVAQVIVDRVHE 596


>gi|184155197|ref|YP_001843537.1| prolyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|226701302|sp|B2GBM5|SYP_LACF3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183226541|dbj|BAG27057.1| prolyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
          Length = 573

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 165/314 (52%), Gaps = 16/314 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY++YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 61  MDKAGAVEMLLPGLLPADLWKESGRYEAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A  GE  +  +       +    T F 
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGEDVIAYTDGDYAANLEKATTKFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               +    E                   +   ++   + G+E   I       S+   A
Sbjct: 241 PTKQIGEEAELTKKATP-----------GAHTVDEAAESLGLEASQILK-----SMVFLA 284

Query: 301 TFKGADGKDHYVQM 314
            F+G + K   V M
Sbjct: 285 KFEGEELKPVMVLM 298



 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 12/247 (4%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG  +  +  +LAD         +  ++  + + +  +  I +  +   +      
Sbjct: 336 SLGPIG--VKEDVTILADQ------HLQGMINMALGANDDGYHYINANFNRDFKVDQFGD 387

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +    E   D LP        GIE+GHIF  GT YS    AT    +G+D  + MG Y
Sbjct: 388 FRTVQEGETAPDGLPIKFTN---GIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E + D  G++WP +VAPF I +I + A  +      E I A L + G 
Sbjct: 445 GIGVSRLLSAISEQNADENGLVWPQAVAPFDIHVIPVNAKKEDQMAMAEGITANLEEAGY 504

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P++V VG K   +  VEIK R TG   ++  EE+   
Sbjct: 505 EVLVDDRKERAGVKFADADLIGVPIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEELATN 563

Query: 438 ASHRFSN 444
            +     
Sbjct: 564 IAILLKQ 570


>gi|58337540|ref|YP_194125.1| prolyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227904181|ref|ZP_04021986.1| prolyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|81311450|sp|Q5FJN0|SYP_LACAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58254857|gb|AAV43094.1| prolyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227868200|gb|EEJ75621.1| prolyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 565

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    +II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAESIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMMMPHLLPATLWQESGRYQKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDQQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +     A     NE   D 
Sbjct: 335 PVNADWADKIIADETVKGLYNVVVGAGETDYQFKNANLDRDFKVDEFADIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++AV+E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAQPVIMGSYGIGVTRMLSAVVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                +G+ WP  +APF+I ++ +K + +   +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTDRGVAWPKEIAPFEIHIVQMKMNKEDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 514 KFADADLVGAPVRITIGKK-AADGIVEVKRPTDEKAVEMSIDELDKFVNQEL 564


>gi|23466273|ref|NP_696876.1| prolyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227546627|ref|ZP_03976676.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|81847214|sp|Q8G3N0|SYP_BIFLO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23327022|gb|AAN25512.1| prolyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227212944|gb|EEI80823.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291516313|emb|CBK69929.1| prolyl-tRNA synthetase, family II [Bifidobacterium longum subsp.
           longum F8]
          Length = 597

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 141/232 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE N
Sbjct: 1   MSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 181 RIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 232



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 431 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 490

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 491 WPSVIAPAAVHVVA-TGKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 549

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           G PL  +VG  +V+D  +E++ R    +
Sbjct: 550 GVPLVAVVGRDYVNDGTIELRDRNGENK 577


>gi|33239959|ref|NP_874901.1| prolyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|81835850|sp|Q7VD75|SYP_PROMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33237485|gb|AAP99553.1| Prolyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 603

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/237 (44%), Positives = 149/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L++R G I + + GIY+++PL  K +  + +I++EE
Sbjct: 1   MRVSRLMLVTLRDVPAEAEIVSHQLLIRGGFIKRVTSGIYAYMPLMWKVIKKITSIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G +E  +P L  A+LW ESGR+D Y      M  L+DR  + +  GPTHEEV+T I
Sbjct: 61  LDSKGCLETLLPQLHPAELWKESGRWDGYTAGEGIMFHLSDRQGRELGLGPTHEEVITKI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF       K +Y +M
Sbjct: 121 ANEFLQSYKQLPVNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHADETNLKETYLEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y +IF R GL+++ + A+SG IGG  S EF+V A+ GE  +  S D        
Sbjct: 181 NDAYEKIFKRCGLETVAVDADSGAIGGAESREFMVTAEAGEDLILLSPDKKYAANQE 237



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 119/254 (46%), Gaps = 5/254 (1%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAA 258
           G +G DL   ++  A     +     D     + S     + I      +          
Sbjct: 346 GFVGPDLKDSYLNKAANWNKKFIRFTDITASNLDSFICGANTIDQHRAFVNWSKVGGLPE 405

Query: 259 TSDVHNEKLFD---SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             D+ N    D     P+ K ++ RGIEVGHIF  G KYS  + A+F    G +    MG
Sbjct: 406 IVDIRNAMPGDISIHDPKQKLIAKRGIEVGHIFQLGRKYSSCLQASFTNEMGLEEPFWMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+  A +E ++D  GIIWP  +APF++ +I     D + R+  EK+Y++L   
Sbjct: 466 CYGIGISRLAQASVEQNYDQSGIIWPLGIAPFEVIVIVANMKDDLQRELGEKLYSQLKDE 525

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +F  ADL+G P ++I G +  +   VE+  R TGI + +  EE I
Sbjct: 526 GVDVLIDDRKERAGVKFKDADLIGIPWKIISG-RDSATGIVELVERSTGISKSLKAEEAI 584

Query: 436 NYASHRFSNNRPVL 449
                  SN +  +
Sbjct: 585 KELLEEISNYKKSI 598


>gi|257387444|ref|YP_003177217.1| threonyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169751|gb|ACV47510.1| threonyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 640

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 158/447 (35%), Gaps = 44/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y     +   RD      ++ L +  I +    G+  + P G+  L+ ++  + +  
Sbjct: 228 LDEYLERRQKAKERDHRKIGQEMDLFS--IDETTGPGLPLYEPNGKTVLNELSEYVADLN 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P +   +LW +SG YD+Y  +M  L D ND+     P +      IF   
Sbjct: 286 REAGYDEVETPHVFRTELWKKSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFDQK 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP  +++    +R E R    G+ R+  F + D + F + P+  +     +   
Sbjct: 345 SWSYRDLPIRYFEDGKVYRKEQRGELSGLSRTWSFTIDDGHLF-VRPDQIEAEVLSIMDI 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L I     L    ++  + P     S E    A++    V   +         +     
Sbjct: 404 ILDILDTFSLDY-TVQFATRPEKSTGSDEIWEKAESQLEAVLEQEGIDYVVEEGDG---- 458

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +    D+L  +       ++                 
Sbjct: 459 ----------------AFYGPKIDFAFEDALGRHWDGPTVQLDFNMPDR--------FDL 494

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G D +DH  V +     G+      V+   ++GK    P  +AP ++ ++ +   + 
Sbjct: 495 TYTGEDNEDHRPVMIHRALYGSYERFFMVLIEHYNGKF---PPWLAPEQVRILPVSDDN- 550

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D CE+I A L      V  +D    +G +  VA     P  +++G    +   + ++
Sbjct: 551 --IDYCEEIAAELDD--FRVEIEDRSWTVGKKIQVAHDDKVPYMMVIGDDEEAAGTISVR 606

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R     +D+ L +   +        R
Sbjct: 607 DRKEREEKDLELADFEQHLEREVEQKR 633


>gi|307636813|gb|ADN79263.1| threonyl tRNA sythetase [Helicobacter pylori 908]
 gi|325995402|gb|ADZ50807.1| Threonyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 612

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       E    A     +    +  +D+ I      F     
Sbjct: 384 MKAFDFSY-EMELSTRPAKSIGDDEVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNE--- 475

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 476 RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|197122302|ref|YP_002134253.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|238689843|sp|B4UAM8|SYT_ANASK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|196172151|gb|ACG73124.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 650

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 141/446 (31%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T   H+ + G   WLP G    + +   +R    + G 
Sbjct: 238 LAKLEEVKKRDHRRLGPQLGLFT--FHEFAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---------RNDKAMIYGPTHEEVMTDI 117
            E+  P L +  LW  SG +  Y + M  + D          +  +    P +      I
Sbjct: 296 QEVKTPLLFNKRLWETSGHWGKYRENMFLVVDSESDPALPLEDRCSFSLKPMNCPSHHLI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +R   +SYR LP  ++      R+E      G+ R R+F   DA+ + L  E       +
Sbjct: 356 YRMDKRSYRELPVRYFTTDALHRNEASGSLGGLTRVRQFEQDDAHIY-LREEQVTDEVLR 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +F     ++   GL        + P            A+    +   +          + 
Sbjct: 415 IFELMKVVYGAFGLGF-EATFSTRPEQRIGDDALWDRAEALLRKSLDATGLKWTLNAGDG 473

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I +                       DSL    +     ++             
Sbjct: 474 AFYGPKIDMLVT--------------------DSLGRKWQTCTIQLDYAAPER------- 506

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               TF G D K+H  V +     G+     A++   + G    W   +AP +  ++ + 
Sbjct: 507 -FDLTFVGEDNKEHRPVVIHRAIYGSFERFVAILVEHYAGAFPAW---LAPVQARVVTV- 561

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      +    L   G  V  D   +++G++   A L   P  ++VG K V    
Sbjct: 562 --SDRFEAWAREAGEALQARGWRVEVDASSDKLGAKIRNAQLAKIPFTLVVGEKEVEAKG 619

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V  +       + M LE      +  
Sbjct: 620 VSPRRHGGEDLKTMPLEAFAELMTRE 645


>gi|195953061|ref|YP_002121351.1| prolyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|226701299|sp|B4U8B2|SYP_HYDS0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|195932673|gb|ACG57373.1| prolyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 565

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/231 (43%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL   +E P + E ASH+ + + G I Q + GIY   P+  + L  +  I+R+E
Sbjct: 1   MRWSRYFLYTTKEEPSETEAASHRFLTKAGFIKQVASGIYELTPIAFRVLKKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +  L  A+LW E+GR+D YG E+ +L DR+D+    GPTHEE +TD+ R 
Sbjct: 61  MDKAGAQELLLTILNPAELWKETGRWDYYGNELFKLKDRSDRDYCLGPTHEEEITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  KFRDE RPR+G++R REF+MKDAYSFD   E +K+SY+ M  +
Sbjct: 121 TVRSYKQLPLNLYQIHTKFRDEKRPRYGLIRGREFIMKDAYSFDTDEESAKNSYDIMVKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RL L  + ++A+ G IGG  SHEF+ +   GE  +   ++     
Sbjct: 181 YKNIFKRLNLNILMVKADVGQIGGKSSHEFVAITKYGEALIAYCENCGYAA 231



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 3/204 (1%)

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMS 299
               +   +     +    DV   +  D  PE        +G+E+GH F  GT+YSLPM 
Sbjct: 359 FNKPHYHYKNANIDFENFVDVAQVEENDPCPECGSPLKVAQGLELGHTFLLGTRYSLPMK 418

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A F   DG +  V MG YGIG  R++AA++E  HD KGI WP  VAPF++ +  +   D 
Sbjct: 419 AFFTDKDGVEKPVVMGCYGIGISRLIAALVEQYHDEKGIKWPLPVAPFQVLISCVNTSDD 478

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +     E +Y  L++ G +V +DD     G +F  ADL+G P +++VG K   D  VE+ 
Sbjct: 479 IQYSTSEHLYKSLTQEGIEVLFDDRDVSPGVKFNDADLIGIPYRIVVGKK-AKDGLVEVV 537

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T    D+ +++V++Y     +
Sbjct: 538 DRHTLKAVDVPIDKVLDYIKDILN 561


>gi|325109306|ref|YP_004270374.1| prolyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324969574|gb|ADY60352.1| Prolyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 578

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 114/228 (50%), Positives = 156/228 (68%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P ++E P DAE+ SH+LMLR G+I Q   G Y++LPLG +++    AIIREE
Sbjct: 1   MRWTQSLIPTMKETPADAEVPSHQLMLRAGLIRQLMAGAYTYLPLGWRSVQKAAAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDK--AMIYGPTHEEVMTDI 117
             R GA E+ +P LQ  +L+  +GR +++G  +++    R D+   +  GPTHEEV+TD+
Sbjct: 61  MERAGACELHMPALQPIELFERTGRINAFGSVLMKFDVPRGDRKVPVALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              HI SYR LP T YQIQ KFR+E RPRFGV+R+ EFLMKDAYSF  + E    +Y+ M
Sbjct: 121 ISRHISSYRQLPLTVYQIQTKFRNEERPRFGVLRTSEFLMKDAYSFASSLEQLNTTYDAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           + +Y R+F R GL+ IP+ AESGPIGGD SHEF++ AD GE Q+   K
Sbjct: 181 YDAYCRVFKRCGLEFIPVEAESGPIGGDASHEFMIPADNGEDQIVYCK 228



 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 107/209 (51%), Gaps = 2/209 (0%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
                +          T D+ N    D  P++        GIEVGH+F  GTKYS  +SA
Sbjct: 368 QHYTGVNVGRDYQLDQTHDLRNAAAGDPCPKSGEPMDLVHGIEVGHVFKLGTKYSESLSA 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +     K H + MG YGIG  R+VA + E+ HD KG++WP S+AP+++ +I +K  D+ 
Sbjct: 428 MYLDEHEKRHPIIMGCYGIGVNRIVAGLAETRHDDKGLLWPISIAPYEVLIIPLKTDDEE 487

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              A   IYA L + G DV  DD   + G +F  ADL+G P ++++G K + +   E+K 
Sbjct: 488 LMSAANSIYAELKEQGVDVLMDDRSARPGVKFNDADLIGIPYRIVIGGKGLKEGVAEVKA 547

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R     E + L++V+   +   S  +  L
Sbjct: 548 RTDADAEKVPLDQVVANVTSLVSAAKEAL 576


>gi|145230123|ref|XP_001389370.1| threonyl-tRNA synthetase, cytoplasmic [Aspergillus niger CBS
           513.88]
 gi|134055485|emb|CAK44000.1| unnamed protein product [Aspergillus niger]
          Length = 718

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 152/464 (32%), Gaps = 51/464 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + + +++R
Sbjct: 282 KQMQEHLKFLEE----AEKRNHVKLGKEQELFFFDEVSPGCPFLLPNGTKIFNALQSLLR 337

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F
Sbjct: 338 SEYRKRGYQEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLF 396

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 397 GHRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIF-CTQDQITSEIEGL 455

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ I   + 
Sbjct: 456 FDFLQAIYGLFGFTF-KLKLSTRPEKYLGELETWNYAEEQLKAAMTKFKGNDWTIDEGDG 514

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 515 AFYGPKIDITIA-------------------DALKREFQCATIQLDYQAPINFKLEYMSN 555

Query: 298 MSATFKGAD-----------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             A+   A            G+   V +    IG+      ++     GK   WP  ++P
Sbjct: 556 EKASADAAKEGEAKPNEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGK---WPFWISP 612

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +I ++ +        D  E++   L     +V  D  G  +  +     L  +    +V
Sbjct: 613 RQILIVPVMP---AVNDYVEELQTILRGDKLNVDIDLSGNTMQKKIRTGQLQQYNFIFVV 669

Query: 407 GSKFVSDSKVEIKHRLTGIRE----DMSLEEVINYASHRFSNNR 446
           G+       V I++R     +     + L+EV           R
Sbjct: 670 GASEKESRTVNIRNRDDPATQKQGVMIPLDEVREKLRSLRKERR 713


>gi|109947952|ref|YP_665180.1| threonyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|123362536|sp|Q17VZ5|SYT_HELAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109715173|emb|CAK00181.1| thrS [Helicobacter acinonychis str. Sheeba]
          Length = 612

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 152/440 (34%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +                        
Sbjct: 384 MKAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALKEHHINYKIDEGGG-------- 434

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D+L    +     +++        ++ L  +     
Sbjct: 435 ------------AFYGPKIDIKITDALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I LI I     V    
Sbjct: 477 -NNAEQPVMIHRAILGSFERFIAILSEHFWGNFPFF---VAPTQIVLIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ +    + I+ R   
Sbjct: 530 ALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|227504819|ref|ZP_03934868.1| prolyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198669|gb|EEI78717.1| prolyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 591

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 134/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSNLFLRTLREDPADAEVLSHKLLVRAGYVRRAAPGVYTWLPLGLRTLTKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  EM  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEMLFPALLPREPYELTDRWTEYGDNLFRLKDRKGADMLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDEGLDESYMRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             IF+RL +     +A SG +GG  S EF+ ++  GE     +
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSPAGEDTFVRA 226



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A + 
Sbjct: 419 PGGMGTLTLERGIELGHIFQLGRKYTKAFDVQILDENGKRAVPTMGSYGIGVSRMMAVLA 478

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E   D KG+ WP  VAPF++ +  +   D    +A +K+   L   G +V +DD  +   
Sbjct: 479 EQQADEKGLRWPVDVAPFQVHV-AVANKDAAALEAGQKLVEDLDAAGIEVLFDDRPKVSP 537

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G +F  A+LLG P   I+G +  +D  +E++ R  G   ++  +E+++       
Sbjct: 538 GVKFKDAELLGMPFIAILG-RSFADGIIELRIRG-GETLEVPADEIVDKLLELVR 590


>gi|254383626|ref|ZP_04998976.1| threonyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342521|gb|EDX23487.1| threonyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 658

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 147/450 (32%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    +   +AE   H+ +     +     +   G+  + P G      +    R 
Sbjct: 241 SKDELKAHLDFLAEAEKRDHRKLGNELDLFSVPDEIGSGLAVFHPRGGIIRRTMEDYSRR 300

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+ +SG  D Y + M               P +  +   IF
Sbjct: 301 RHEEEGYEFVYTPHATKGALFEKSGHLDWYAEGMYPPMQLDGGTDYYLKPMNCPMHNLIF 360

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      ++ 
Sbjct: 361 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMAEELDRT 419

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     QV   +     P P   
Sbjct: 420 LTFVLNLLRDYGLTDFYLELSTKDPEKFVGSDEAWEEATAVLAQVAEKQGLPLVPDPG-- 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    +++L
Sbjct: 478 ------------------GAAFYGPKISVQCKDAIGRTWQMSTVQLD----FNLPERFNL 515

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG +   V +     G++    AV+   + G     P  +AP +   I I 
Sbjct: 516 ----EYTAPDGSRQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPIG 568

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  ++  A   K G  V  D   +++  +      L  P  +IVG + ++   
Sbjct: 569 DG---HVEYLQEFAAEAKKQGLRVEVDASSDRMQKKIRNHQKLKVPFMIIVGDEDMAAGT 625

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       ++ +E +   +   ++ 
Sbjct: 626 VSFRYRDGSQENGIAKDEALAKLAKVVADR 655


>gi|308062983|gb|ADO04870.1| threonyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 612

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +  +  
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEY-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +   A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|76801848|ref|YP_326856.1| threonyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|121731906|sp|Q3IRE7|SYT_NATPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|76557713|emb|CAI49296.1| threonine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 642

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 150/443 (33%), Gaps = 41/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      +L L + +      G+  + P G+  L  +   + +  +  G
Sbjct: 231 FLQRREEAKKRDHRKLGQELDLFS-IPDVTGPGLPLYHPNGKAVLRELEDFVDQLNDDQG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L   +LW +SG Y++Y  +M  L D ND+     P +      IF     SY
Sbjct: 290 YEFVETPHLFRTELWKQSGHYENYVDDMF-LLDVNDEEYGLKPMNCPGHATIFNQGNWSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +    +R E R    G+ R   F + D + F +  +  +   N +      +
Sbjct: 349 RDLPVRYAENGKVYRKEQRGELSGLSRVWAFTIDDGHLF-VERDAIEQEVNVIMDQIEEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                L    +   + P     S E    A T    V  S   MD+ I S +  F     
Sbjct: 408 LDTFDLDY-EVALATRPEKSVGSDEIWEQAQTQLRSVLESS-GMDYDIESGDGAFYG--- 462

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                              +    D+L  N       ++                 T+ G
Sbjct: 463 ----------------PKIDFAFEDALGRNWDGPTVQLDFNMPER--------FDLTYTG 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D ++H  V +     G+      V+    DG    W   +AP ++ ++ +   +     
Sbjct: 499 EDNEEHRPVMIHRALYGSYERFFMVLIEHFDGNFPTW---LAPEQVRILPVSDDNIG--- 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  R       V  +D    +G +   A     P  ++VG        V ++ R  
Sbjct: 553 YAKQLKNRYLD-DFRVEIEDRSWTVGKKIQTAHDDRVPYMLVVGDNEEEAGTVSVRDRFE 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             R+D+ +E   ++ +      R
Sbjct: 612 DERKDVDVETFRDHLASEVEEKR 634


>gi|50954739|ref|YP_062027.1| threonyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71657985|sp|Q6AFC3|SYT_LEIXX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50951221|gb|AAT88922.1| threonyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 695

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 140/455 (30%), Gaps = 51/455 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +   +R+     G
Sbjct: 268 YQTRMEEAAKRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIIRKEIEDYMRDRLIANG 326

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +    L+  S   + Y + M                 R  +     P +  +
Sbjct: 327 YEMVNTPHITKGHLFETSQHLNWYREGMFPPMHLDEERDAEGNVTRQGQDYYLKPMNCPM 386

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP    +    +R E      G+ R R     DA+ + +T E  + 
Sbjct: 387 HNLIFRSRGRSYRELPLRLSEFGTVYRYEKSGTLSGLTRVRGLTQDDAHIY-VTEEQIRD 445

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            + +     L      GL    +   +  P     S E    A     +V          
Sbjct: 446 EFARQLQFVLETLRGYGLTDFYLELSTKDPEKYVGSDESWETATETLREVAVESGLELVD 505

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++        
Sbjct: 506 DPG--------------------GAAFYGPKISVQARDAIGRTWQLSTVQLDFNQPEL-- 543

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                     +  ADG +     +    +G++    A++   H G   +W   +AP ++ 
Sbjct: 544 ------FELEYNAADGTRKQPAMIHRALLGSIERFFAILLEHHAGAFPVW---LAPTQVV 594

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +           + + A+L   G     D   +++  +         P Q+IVG + 
Sbjct: 595 GIPVA---DAYGPFLDDVIAQLRARGVRAEVDHSDDRMQKKIRTHTKAKVPFQLIVGEED 651

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            S   V  + R       ++++E I         +
Sbjct: 652 ASAGTVSFRFRDGTQLNGVAVDEAIERIVASIQTH 686


>gi|319956647|ref|YP_004167910.1| prolyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319419051|gb|ADV46161.1| prolyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 571

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 106/229 (46%), Positives = 147/229 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +P  +E P DA + SH  +LR G I     G+Y++LPLG+++LD V  +++EE
Sbjct: 1   MRFSKLLIPTAKEAPSDAVLPSHIYLLRAGFIQSVGAGLYNFLPLGKRSLDRVRQVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +  A+LW ESGR++ YGKE+LR  DR +   + GPTHEE+M ++ R 
Sbjct: 61  LDAAGCQEVDLAFVTPAELWRESGRFEKYGKELLRFTDRKENEFVLGPTHEEMMVNLVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI+ KFRDE+RPRFG+MR REFLM+D YSF    E  K  ++ M  +
Sbjct: 121 SVKSYKQLPLHLYQIKTKFRDEIRPRFGLMRGREFLMEDGYSFHKDEEDMKREFDHMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y RIF RLGL    + A+SG IGG  S EF+VLAD+GE  +   +    
Sbjct: 181 YSRIFTRLGLDFRVVEADSGAIGGSGSKEFMVLADSGEDTIVVCEGCDY 229



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 98/179 (54%), Gaps = 1/179 (0%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E    +    +    +GIEVGHIF  GT+YS P++ATF   +GK     MG+YGIG  R
Sbjct: 394 QEGDRCAKCGGRLHYTKGIEVGHIFQLGTRYSEPLNATFLDENGKRRPFVMGTYGIGVSR 453

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++AA+IE  HD +G IW    APF + +I     +   R+A E++Y  L   G +V  DD
Sbjct: 454 LLAAIIEQHHDDRGCIWTRESAPFDVEIIVSNIANDAEREAAEELYRLLKSKGVEVLLDD 513

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             E+ G +    +L+G PL ++VG K ++D +VE+  R    R D+ LE V +    R 
Sbjct: 514 RKERFGFKMKDFELIGIPLGIVVGKK-LADGQVELIVRDGLERIDLPLERVADEVLERV 571


>gi|309808806|ref|ZP_07702691.1| proline--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308167932|gb|EFO70065.1| proline--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 472

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 7/153 (4%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           ++A  G +G        V A   +  +        + +     + D      +I   +  
Sbjct: 327 VKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFKV 379

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + M
Sbjct: 380 NEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           GSYGIG  R+++A++E      GI        F
Sbjct: 440 GSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF 472


>gi|240172755|ref|ZP_04751414.1| prolyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 582

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 132/223 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +   + G+YSWLPLG + L N+  ++REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYVRPIAPGLYSWLPLGLRVLRNIERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLVLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDSAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFERLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 2/161 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                  V ARGIE+GHIF  G KY+   SA   G DGK   + MGSYGIG  R+VA V 
Sbjct: 409 PDGAGSLVMARGIEIGHIFQLGQKYTDAFSADVLGEDGKPVRLTMGSYGIGVSRLVAVVA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD  G+ WP ++APF + L+ I   D   R     +   L++ G +V  DD     G
Sbjct: 469 EQHHDELGLRWPPAIAPFDVHLV-IANKDAEARTGAVALATELNQQGVEVLLDDRQASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            +F  A+LLG P  V+VG +  +D  VE++ R +G   +++
Sbjct: 528 VKFKDAELLGMPWIVVVG-RGWADGVVELRDRFSGQTRELA 567


>gi|227826680|ref|YP_002828459.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|259516736|sp|C3MUC7|SYT_SULIM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227458475|gb|ACP37161.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
          Length = 545

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 156/448 (34%), Gaps = 42/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  +   KL L +    +   G+  + P GQ   + + A +RE  
Sbjct: 124 QLKDYLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREIN 182

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +   D+W  SG Y  Y  +++      D+  +  P +      I++S 
Sbjct: 183 DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGV-KPMNCPAHILIYKSK 241

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++YR+LP  F +    +R E +    G++R R F+  D + F L  +  +     +   
Sbjct: 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISK 300

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            + ++H+ G     I     + P     S E    A                        
Sbjct: 301 TVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES------------- 347

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ DSL    ++S   ++    F    ++    
Sbjct: 348 -------GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVD----FNLPERF---- 392

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W  SV   ++ ++ I   
Sbjct: 393 KLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSV---QVRVLPIT-- 447

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V 
Sbjct: 448 -DEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVT 506

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R      ++  E+ +          
Sbjct: 507 VRARGNIEVRNVKFEKFLELLITEIGQR 534


>gi|295693140|ref|YP_003601750.1| prolyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295031246|emb|CBL50725.1| Prolyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 565

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +     A     NE   D 
Sbjct: 335 PVNADWADKIIADETVKNLYNVVVGAGETDYQFENANLDRDFKVDEFADIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                +G+ WP  +APF I ++ +K + +   +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTERGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 514 KFADADLVGAPIRITIGKK-AADGIVEVKRPTDNKATEMSIDELDKFVNQEL 564


>gi|309807201|ref|ZP_07701175.1| proline--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308166422|gb|EFO68627.1| proline--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
          Length = 472

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 7/153 (4%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           ++A  G +G        V A   +  +        + +     + D      +I   +  
Sbjct: 327 VKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFKV 379

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + M
Sbjct: 380 NEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           GSYGIG  R+++A++E      GI        F
Sbjct: 440 GSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF 472


>gi|57167588|ref|ZP_00366728.1| prolyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|57020710|gb|EAL57374.1| prolyl-tRNA synthetase [Campylobacter coli RM2228]
          Length = 569

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/282 (36%), Positives = 156/282 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MKFSKLYAPSLKEAPKDATLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIRTIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFVTPATLWQESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     ++ M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLTREFDLMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL+   + A+SG IGG  S EF+VLA  GE  +   ++             +
Sbjct: 182 YSQILQRMGLEFRAVDADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAIRAN 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +        E L      N   + + +
Sbjct: 242 KTCEEERPEANYASKFHTPDVKTIEALAQFFKINAFYTVKAV 283



 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 1/179 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    +    K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 ENDCCAKCGGKLKLSKGIEVGHIFKLGQKYSKAMNANFLDENGKSKPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  LS  G +V  DD 
Sbjct: 452 LAVAIEANHDEKGCIWNKTLAPFTLEIIISNIKDEKSLEFATKLYEDLSNAGIEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E+ G +    +L+GFP  ++VG K +   ++E   R T  ++ +S +E  ++      
Sbjct: 512 NERFGVKMNDFELMGFPYALVVG-KGLEKDELEFIDRKTLEKKIISSKEAFDFIKKSIE 569


>gi|297571384|ref|YP_003697158.1| threonyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931731|gb|ADH92539.1| threonyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 670

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 74/464 (15%), Positives = 153/464 (32%), Gaps = 60/464 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L   QE   +AE   H+ +     +     +   G+  + P G      +    R+
Sbjct: 242 SKDELRAYQERIAEAERRDHRKLGSELDLFSFPDEIGSGLAVFHPKGGIIRMEMENYSRQ 301

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYG 107
           +        ++ P +   +L+  SG  D Y   M      +++                 
Sbjct: 302 KHIEGNYSFVNTPHITKGNLFEVSGHLDFYADGMYPPMHMDEERDADGNITKQGADYYLK 361

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +  +   +++S  +SYR LP   ++    +R+E      G+ R+R F   DA+ +  T
Sbjct: 362 PMNCPMHNLVYKSRGRSYRELPLRLFEFGTVYRNEASGVVHGLTRARGFTQDDAHIY-CT 420

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVF 222
            +  K    ++    L +    GL    +   +      +G D   E    +     +V 
Sbjct: 421 RDQMKDELTRLLTFVLDLLKDYGLDDFYLELSTKNPKKFVGDDDVWE---ESTRTLQEVA 477

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +      P P                       A      + +  D+L    ++S   +
Sbjct: 478 EASGLELVPDPE--------------------GAAFYGPKISVQAKDALGRTWQMSTIQL 517

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       + G DG+ H  V +     G++     V+   + G    W 
Sbjct: 518 D----FNLPERF----DLEYTGPDGERHRPVMIHRALFGSIERFFGVLTEHYAGAFPAW- 568

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++  + +        D  + +  +L   G  V  D   ++   +   A     P
Sbjct: 569 --LAPVQVRCVPVA---DAFNDYLDSVADKLRAQGVRVEVDKSDDRFPKKIRNASKDKVP 623

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +I G + +    V  + R       ++++E +        N+
Sbjct: 624 FTLIAGGEDMEAGAVSFRMRDGSQDNGVAVDEAVARIVDHIRNH 667


>gi|227503402|ref|ZP_03933451.1| prolyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227075905|gb|EEI13868.1| prolyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 594

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + GIY+WLPLG +AL  +  ++R+E 
Sbjct: 9   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGIYTWLPLGLRALRKIEDVVRQEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  ++ GPTHEE+  +  +  
Sbjct: 69  DAIGGQEMLFPALLPREPYEKTNRWVEYGPNLFRLQDRKNADLLLGPTHEEMFANAVKDM 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD+  EG   SY +   +Y
Sbjct: 129 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMNDEGLDSSYARHRKAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             +F RL +     +A SG +GG  S EF+ L++ GE     S
Sbjct: 189 QNVFDRLEIDYAICKATSGAMGGSASEEFLALSEVGEDLFVRS 231



 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 4/166 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A + E  HD KG+
Sbjct: 431 QRGIELGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGISRMLAVLAEQRHDDKGL 490

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP +VAP+++ +  +   D    +A +K+   LS+ G +V +DD  +   G +F  A+L
Sbjct: 491 NWPVAVAPYQVHV-AVANKDAAAMEAGDKLVEELSQAGLEVLFDDRPKVSPGVKFKDAEL 549

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P   IVG +   D  +E++ R      ++  +E+++       
Sbjct: 550 LGMPFVAIVG-RAFKDGIIELRIRG-QETLEVPADEIVDKLLELVR 593


>gi|326329871|ref|ZP_08196188.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325952338|gb|EGD44361.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 659

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 139/450 (30%), Gaps = 47/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      +L L +    +   G+  + P G      +   +R      G 
Sbjct: 249 LARIEEAERRDHRKLGRELDLYS-FPDELGSGLPVFHPKGGVIKREMEDYVRRRHIEEGF 307

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +    L+  SG    Y   M    +              +   I+++  +SYR
Sbjct: 308 SYVGTPHISKDGLFHTSGHLPYYADTMFPPMELEGAKYQLKAMSCPMHNLIYKAKGRSYR 367

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP   ++    +R E      G+ R R     D++S+ +T E +      +    L + 
Sbjct: 368 ELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHSY-VTKEQAPAEIKHLLDFVLGVL 426

Query: 186 HRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              GL    +   +        IG D   E    A      V           P      
Sbjct: 427 KDFGLDDFYLELSTRDADNAKFIGSDEQWE---TATKILEDVATESGLELVADPG----- 478

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + +  D++    ++S    +      FG +Y     
Sbjct: 479 ---------------GAAFYGPKISVQARDAIGRTWQMSTIQYDFNQPARFGLEY----- 518

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              + ADG     V + S   G++     V+   + G     P  +AP ++  I +    
Sbjct: 519 ---QAADGTRQEPVMIHSAKFGSIERFLGVLVEHYAGAM---PPWLAPVQVVGIPVA--- 569

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++  +L   G  V  D+  ++   +   A L   P  +I G + V    V  
Sbjct: 570 DAFADYLYEVAGKLKAKGIRVEVDESDDRFQKKIRNAQLQKIPFMLIAGGEDVEKGAVSF 629

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           ++R       + ++E I        ++  V
Sbjct: 630 RYRDGRQENGIPVDEAIERIVAAVESHEQV 659


>gi|306836356|ref|ZP_07469334.1| proline--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567716|gb|EFM43303.1| proline--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 594

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + GIY+WLPLG + L  +  ++R+E 
Sbjct: 9   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGIYTWLPLGLRTLRKIEDVVRQEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  ++ GPTHEE+  +  +  
Sbjct: 69  DAIGGQEMLFPALLPREPYEKTNRWVEYGPNLFRLQDRKNADLLLGPTHEEMFANAVKDM 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD+  EG   SY +   +Y
Sbjct: 129 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMNDEGLDSSYARHRKAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             +F RL +     +A SG +GG  S EF+ L++ GE     S
Sbjct: 189 QNVFDRLEIDYAICKATSGAMGGSASEEFLALSEVGEDLFVRS 231



 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 4/166 (2%)

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RGIE+GHIF  G KY+          +GK     MGSYGIG  R++A + E  HD KG+
Sbjct: 431 QRGIELGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGISRMLAVLAEQRHDDKGL 490

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
            WP +VAP+++ +  +   D    +A +K+   LS+ G +V +DD  +   G +F  A+L
Sbjct: 491 NWPVAVAPYQVHV-AVANKDAAAMEAGDKLVEELSQAGLEVLFDDRPKVSPGVKFKDAEL 549

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P   IVG +   D  +E++ R      ++  +E+++       
Sbjct: 550 LGMPFVAIVG-RAFKDGIIELRIRG-QETLEVPADEIVDKLLELVR 593


>gi|242791014|ref|XP_002481676.1| threonyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718264|gb|EED17684.1| threonyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 724

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 153/450 (34%), Gaps = 26/450 (5%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L  L+E    AE  +H+ + +          S G    LP G K  + +  ++R E 
Sbjct: 288 KEHLKFLEE----AEKRNHQKIGKEQELFFFDDVSPGCPFLLPHGTKIFNALQKLLRAEY 343

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F   
Sbjct: 344 RKRGYQEVQTPNMYDVGIWKTSGHWAHYSDDMFKL-DVEKREWALKPMNCPGHFMLFGHR 402

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP       +  R+E      G+ R R+F   D++ F  T E        +F  
Sbjct: 403 ERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDSHIF-CTSEQITSEIEGIFDF 461

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G     ++  + P       E    A+    Q   +    D+ I   +  F 
Sbjct: 462 LKSVYGLFGFTF-KLKLSTRPEKYMGELEAWNYAEEQLRQALNNFKGDDWEINEGDGAFY 520

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +I +     +         +L    P N ++     E                A
Sbjct: 521 GPKIDITISDALKRDFQCA----TIQLDYQAPINFKLEYITNEKQAGSDAKANKDDTEKA 576

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+ +   V +    IG+      ++     GK   WP  ++P +I ++ +      
Sbjct: 577 KESNAN-RARPVVIHRAIIGSFERFLGILIEHFAGK---WPFWLSPRQILIVPVMP---A 629

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++   L     +V  D  G  +  +     L  +    +VG++      V I++
Sbjct: 630 LNDYAKELQENLLADKFNVDVDVSGNTLQKKIRTGQLAQYNFIFVVGAQEKESRSVNIRN 689

Query: 421 RL---TGIRED-MSLEEVINYASHRFSNNR 446
           R    +  + + +SLEE            R
Sbjct: 690 RDDPSSHAKGELISLEEARVKLKALRKERR 719


>gi|239917575|ref|YP_002957133.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Micrococcus
           luteus NCTC 2665]
 gi|281413939|ref|ZP_06245681.1| threonyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|259516574|sp|C5CBI2|SYT_MICLC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239838782|gb|ACS30579.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Micrococcus
           luteus NCTC 2665]
          Length = 672

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 140/463 (30%), Gaps = 55/463 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L   QE   +AE   H+ +     +     +   G+  + P G      +    R
Sbjct: 241 ASKDDLKAYQERLAEAERRDHRKLGAELDLFSFPDELGSGLPVFHPRGGIIRKEMEDYSR 300

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-------------RNDKAMI 105
                 G   +  P +    L+  SG  D Y   M                  R  +   
Sbjct: 301 RRHTEAGYEFVYTPHITKQHLYEVSGHLDWYANGMFPPMHIDEVRDPETGEITRQGQNYY 360

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFD 164
             P +  +   I+RS  +SYR LP   ++    +R E      G+ R R     DA+ + 
Sbjct: 361 LKPMNCPMHNLIYRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY- 419

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFC 223
            T E  K          L +    GL    +   +  P     S E    A     +V  
Sbjct: 420 CTREQMKEELTTTLNFVLDLLKDYGLNDFHLELSTKDPEKFVGSDEIWEEATRTLAEVAE 479

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +      P P                       A      + +  D++    ++S   ++
Sbjct: 480 ASGLQLVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD 519

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
               F    ++       ++ ADG     V +     G++     V+   + G    W  
Sbjct: 520 ----FNLPERF----DLEYQAADGTRQRPVMIHRALFGSIERFLGVLTEHYAGAFPAW-- 569

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP ++  I +    +   D  + + A+L   G     DD  ++   +   A     P 
Sbjct: 570 -LAPEQVVAIPVA---EAFNDYLDDVVAKLRAEGIRARLDDSSDRFPKKIRTAAKEKAPF 625

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +I G +      V  + R       + +EE I          
Sbjct: 626 VLIAGGEDREAGAVSFRFRDGTQDNGVPVEEAIERIVKAVRER 668


>gi|169617674|ref|XP_001802251.1| hypothetical protein SNOG_12019 [Phaeosphaeria nodorum SN15]
 gi|111059311|gb|EAT80431.1| hypothetical protein SNOG_12019 [Phaeosphaeria nodorum SN15]
          Length = 779

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/490 (16%), Positives = 153/490 (31%), Gaps = 78/490 (15%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L  L+E   RD      +        H+ S G   +LP GQ   + + A +REE   
Sbjct: 318 QAHLKFLEEAAKRDHRKIGKE--QELFFFHEASPGSPFFLPHGQIIFNTLQAFLREEYWN 375

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S+ LW  SG +  Y ++M    D   +     P +      IF+   +
Sbjct: 376 RGYQEVQSPNMYSSALWKVSGHWQHYHEDMFTF-DVEKEKWGLKPMNCPGHALIFKHRER 434

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP       +  R+E      G+ R R F   D + F  T +        +F    
Sbjct: 435 SYRELPIRMADFGVLHRNEASGALTGLTRVRRFQQDDTHIF-CTQDQITEEIFGLFDFLR 493

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G     ++  + P G     E    A+   T+                      
Sbjct: 494 AVYGKFGFTF-KLKLSTRPDGFLGEVETWNKAEAKLTEALN----------------QFT 536

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E      A      +  + D+L    + +   ++    F    ++ L    + 
Sbjct: 537 AEGGGQWELNPGDGAFYGPKIDITISDALKREFQCATIQLD----FQLPNQFELEYMTSE 592

Query: 303 K------------------------------GAD----------GKDHYVQMGSYGIGAM 322
                                            +          G    V +     G+ 
Sbjct: 593 VAAAKPKEEKAKEEPAPKDAPAPVEQKKEAADPNAPKKIQPPQPGYARPVMIHRAIYGSF 652

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
               A+I     G    WP  ++P ++ +I +        D  +++ A L K       D
Sbjct: 653 ERFIAIITEHFAG---RWPFWLSPRQVMVIPVMPS---ANDYVKEVQAVLRKNKFHADID 706

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYA 438
             G  +  +   A L  +   ++VG++      V  ++R     +     + L+E +   
Sbjct: 707 VSGNTMQKKIRTAQLSLYNFIMVVGAEEQKARAVNWRNRDDQATQQRGEIVPLDEAVEKL 766

Query: 439 SHRFSNNRPV 448
             +  + R V
Sbjct: 767 -CKLRDERKV 775


>gi|309805512|ref|ZP_07699557.1| proline--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165163|gb|EFO67401.1| proline--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 472

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 7/154 (4%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++A  G +G        V A   +  +        + +     + D      +I   + 
Sbjct: 326 IVKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFK 378

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + 
Sbjct: 379 VNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPII 438

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           MGSYGIG  R+++A++E      GI        F
Sbjct: 439 MGSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF 472


>gi|227878822|ref|ZP_03996729.1| prolyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256843344|ref|ZP_05548832.1| prolyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256849837|ref|ZP_05555268.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|262046917|ref|ZP_06019877.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|293381211|ref|ZP_06627219.1| prolyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|312978246|ref|ZP_07789990.1| proline--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|227861570|gb|EEJ69182.1| prolyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256614764|gb|EEU19965.1| prolyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256713326|gb|EEU28316.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|260572899|gb|EEX29459.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|290922251|gb|EFD99245.1| prolyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|310894964|gb|EFQ44034.1| proline--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 565

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 140/225 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +     A     NE   D 
Sbjct: 335 PVNADWADKIIADETVKNLYNVVVGAGETDYQFENANLDRDFKVDEFADIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                +G+ WP  +APF I ++ +K + +   +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTERGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ +G K  +D  VE+K        +MS++E+  + +   
Sbjct: 514 KFADADLVGAPIRITIGKK-AADGIVEVKRPTDDKATEMSIDELDKFVNQEL 564


>gi|58700004|ref|ZP_00374566.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533480|gb|EAL57917.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 342

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 131/377 (34%), Gaps = 41/377 (10%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
              I + + G   W   G    + + + IR++    G  E+  P L S +LW +SG +D 
Sbjct: 3   LFHIQEEAVGQVFWHEQGYILYNVLESYIRKKLINNGYFEVKTPILVSKELWEKSGHWDK 62

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF- 147
           + + M  + +   K +   P +      IF SH +SYR+LP    +     R+E      
Sbjct: 63  FRENMFIVDESESKKLAIKPMNCPCHVQIFNSHTRSYRDLPIRMAEFGTCHRNESSGSLH 122

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+MR R F   DA+ F +  E       K       ++  LG   I ++    P      
Sbjct: 123 GLMRVRGFTQDDAHIFCM-EEQVNSETIKFCDLLKEVYSELGFNEISVKFSDRPDVRAGD 181

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+    +            P E   +   +                        
Sbjct: 182 DEVWDRAEKALLEAVKEAGLSYELSPGEGAFYGPKLEF---------------------- 219

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRV 324
                  K    R  + G        + LP  + A + GADG K H V +    +G    
Sbjct: 220 -----VLKDAIGRSWQCGT---LQVDFILPERLGAFYIGADGHKHHPVMLHRAILGTFER 271

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++  ++ GK  +W   +AP +++++ I            KI   L + G  V  D  
Sbjct: 272 FIGILIENYAGKFPVW---LAPTQLAILTITN---EADGYATKISNVLKEQGVRVKTDLT 325

Query: 385 GEQIGSQFAVADLLGFP 401
            E+I  +  +  L   P
Sbjct: 326 NEKISYKIRLHSLNKVP 342


>gi|256847045|ref|ZP_05552491.1| prolyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715709|gb|EEU30684.1| prolyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 577

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 110/244 (45%), Positives = 146/244 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V AIIREE
Sbjct: 1   MKQSKILIPTKKEAPSDAEALSHKMMIRAGYIYQVSSGVWSYLPLAYRVIRKVKAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EM  P++  ADLW ++GRY++YG  + +  DRND+  I GPT EEVMT+I R 
Sbjct: 61  MEKADAFEMETPSMLPADLWQQTGRYEAYGDTLFKFKDRNDREHILGPTDEEVMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQI  KFRDE RPRFGV+R +EF M D YSF     G   +YN+   +
Sbjct: 121 SIKSYKKLPLTVYQITDKFRDEPRPRFGVLRGKEFSMLDGYSFAADQAGLDEAYNQQAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG IGGD S EF   A  GE  +  +       +      F 
Sbjct: 181 YRNIFDRIGLDYKIILADSGTIGGDNSQEFSAPAKVGEDTIVYTDGDYAANLEKATGKFT 240

Query: 241 DIIS 244
            +  
Sbjct: 241 GVQQ 244



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 12/247 (4%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GP+G  +  E  +LAD         K  ++    + +  +  + +      +      
Sbjct: 336 SLGPVG--VGEEVKILADN------YVKVLVNMACGANDDGYHYVNANIGRDFRVDQFGD 387

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +    E   D  P        GIE+GHIF  GT YS  + A     +G+   + MG Y
Sbjct: 388 FRTVQEGEIAPDGNPIKFTN---GIEIGHIFKLGTGYSEKLGAQVLDQNGRLVDMIMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++AV E + D  G++WPDS+APF + +I + A          +I  +L K G 
Sbjct: 445 GIGVTRLLSAVAEQNADEYGLVWPDSIAPFDVHVIPVNAKKADQMKMANEISEQLEKAGL 504

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA +DL+G PL+V VG K  S+  VEIK R TG   ++  EEV N 
Sbjct: 505 EVLVDDRKERAGVKFADSDLIGIPLRVTVGKK-ASEGIVEIKIRKTGETVEVKTEEVANT 563

Query: 438 ASHRFSN 444
                  
Sbjct: 564 VQILLKQ 570


>gi|332672963|gb|AEE69780.1| threonine--tRNA ligase [Helicobacter pylori 83]
          Length = 612

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 157/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGMELGLFS-FDDEIGVGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFGFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKHDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVESEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|220917084|ref|YP_002492388.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254783505|sp|B8J823|SYT_ANAD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219954938|gb|ACL65322.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 650

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 141/446 (31%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T   H+ + G   WLP G    + +   +R    + G 
Sbjct: 238 LAKLEEVKKRDHRRLGPQLGLFT--FHEFAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---------RNDKAMIYGPTHEEVMTDI 117
            E+  P L +  LW  SG +  Y + M  + D          +  +    P +      I
Sbjct: 296 QEVKTPLLFNKRLWETSGHWGKYRENMFLVVDSESDPALPLEDRCSFSLKPMNCPSHHLI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +R   +SYR LP  ++      R+E      G+ R R+F   DA+ + L  E       +
Sbjct: 356 YRMDKRSYRELPVRYFTTDALHRNEASGSLGGLTRVRQFEQDDAHIY-LREEQVTDEVLR 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +F     ++   GL        + P            A+    +   +          + 
Sbjct: 415 IFELMKVVYGAFGLGF-EATFSTRPEQRIGDDALWDRAEALLRKSLDATGLKWTLNAGDG 473

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I +                       DSL    +     ++             
Sbjct: 474 AFYGPKIDMLVT--------------------DSLGRKWQTCTIQLDYAAPER------- 506

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               TF G D K+H  V +     G+     A++   + G    W   +AP +  ++ + 
Sbjct: 507 -FDLTFVGEDNKEHRPVVIHRAIYGSFERFVAILVEHYAGAFPAW---LAPVQARVVTV- 561

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      +    L   G  V  D   +++G++   A L   P  ++VG K V    
Sbjct: 562 --SDRFEAWAREAGEALQARGWRVEVDASSDKLGAKIRNAQLAKIPFTLVVGEKEVEAKG 619

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V  +       + M LE      +  
Sbjct: 620 VSPRRHGGEDLKTMPLETFAELMARE 645


>gi|149238003|ref|XP_001524878.1| threonyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451475|gb|EDK45731.1| threonyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 754

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 155/440 (35%), Gaps = 42/440 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A    H+ + R     + ++ S G   WLP G +  + +   +R E  + G  E+  P
Sbjct: 340 AEAAERDHRKIGREQELFIFNEVSPGSAMWLPHGTRIYNTLVDTLRYEYRKRGYEEVITP 399

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + S  LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 400 NMYSTKLWETSGHWQNYKENMFSFEVEK-ETFGLKPMNCPGHCVLFKSRERSYRELPWRV 458

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T E        +F    +++   G +
Sbjct: 459 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTT-EQIGTEIAGVFDLLKKMYGIFGFE 517

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P                  + +            +  +  D        E 
Sbjct: 518 F-KMELSTRP------------------EKYVGDLETWNSAEEKLANALDEFLGKGKWEL 558

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F   +++ L        A   +  
Sbjct: 559 NPGDGAFYGPKIDIMISDALKRWFQCATIQLD----FQLPSRFELEYRTDSNNA--LERP 612

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++   + GK   WP  ++P +I ++ +        +  EK+   
Sbjct: 613 VMIHRAILGSVERMTAILTEHYKGK---WPFWLSPRQILIVPVGPK---YYEYGEKLQKL 666

Query: 372 LSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIR 426
           L+         D  G  +  +     +L +    IVG     ++ V I++R      G  
Sbjct: 667 LNNEHFFYCDIDVSGNTLPKKVRSGQMLKYNFIFIVGEAEEQNNSVNIRNRDIPEEQGKN 726

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E + +++VI    +     R
Sbjct: 727 EMVKVDDVIKQLINLRDEKR 746


>gi|297198372|ref|ZP_06915769.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197714430|gb|EDY58464.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 658

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 138/441 (31%), Gaps = 40/441 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGSELDLFS-IPEQIGSGLAVFHPKGGIIRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFEQSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +  T E      +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMSEELDKTLTFVLGLLRDYG 431

Query: 190 LKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   +  P     S E    A     QV   +     P P               
Sbjct: 432 LTDFYLELSTKDPEKFVGSDEVWEEATETLRQVAEKQGLPLVPDPG-------------- 477

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG- 307
                   A      + +  D++    ++S   ++    F    ++       +   DG 
Sbjct: 478 ------GAAFYGPKISVQTKDAIGRTWQMSTIQLD----FNLPERF----ELEYTSPDGS 523

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   V +     G++    AV+   + G    W   +AP +   I I        +  EK
Sbjct: 524 KQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQALGIPIG---DAHVEYLEK 577

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A   K G  V  D   +++  +   A     P  VI G + ++   V  ++R      
Sbjct: 578 FAAAAKKQGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMAGGSVSFRYRDGSQEN 637

Query: 428 DMSLEEVINYASHRFSNNRPV 448
            +  +E I   +        V
Sbjct: 638 GIPFDEAIAKIAKVVEERAQV 658


>gi|108562547|ref|YP_626863.1| threonyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|123247050|sp|Q1CV33|SYT_HELPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|107836320|gb|ABF84189.1| threonyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 612

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 154/443 (34%), Gaps = 44/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       E    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDEVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              I +                             R  + G I        ++ L  +  
Sbjct: 442 DIKITD--------------------------ALRRKWQCGTIQVDMNLPERFKLAFTNE 475

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +  +  V +    +G+     A++     G    +   VAP +I+LI I     V 
Sbjct: 476 ---RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV- 528

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R
Sbjct: 529 --FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDR 586

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
               +  M L+E +N    +   
Sbjct: 587 EKQAQYKMPLKEFLNMVESKMQE 609


>gi|315586098|gb|ADU40479.1| threonine--tRNA ligase [Helicobacter pylori 35A]
 gi|317179509|dbj|BAJ57297.1| threonyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 612

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I    +     
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHAF 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|32267225|ref|NP_861257.1| prolyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|81835913|sp|Q7VFF0|SYP_HELHP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32263278|gb|AAP78323.1| prolyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 588

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 109/229 (47%), Positives = 150/229 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E+P+DA + SH+ ++R G I Q   GIY++LPLG+K LD V  I++EE
Sbjct: 1   MRFSQLFVNTLKESPKDAVLKSHQYLIRGGFIQQIGSGIYNFLPLGKKLLDKVRFIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +  +  A+LW ESGRY+ YG+E+LR  DR +   + GPTHEEV+T I ++
Sbjct: 61  MDKSGAQEILMGFVTPAELWRESGRYEQYGRELLRFVDRKENEFVLGPTHEEVITHIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDELRPRFG+MR REF+MKD YSF          ++ M  +
Sbjct: 121 TIKSYKQLPLHLYQIHSKFRDELRPRFGLMRGREFIMKDGYSFHSNYADLNREFDVMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y RI  R+GL+   + A+SG IGG  S EF+VLA  GE  +   K    
Sbjct: 181 YKRILQRMGLEFKVVEADSGAIGGSGSKEFMVLAPCGEDTIVVCKGCEY 229



 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 8/228 (3%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           T ++  +   D        +  D   +   +  +     A      E         +   
Sbjct: 362 THIYFDESLRDASNLICGANEKDYHFVGVDLSTFEGLEYADIAQSKEGDLCPKCAQELYY 421

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  G KYS  M+A F   DGK   + MG YG G  R++ A++E   D  G 
Sbjct: 422 TKGIEVGHIFKLGDKYSRAMNAQFLDNDGKTQPLIMGCYGFGISRILPAILEQKSDDLGC 481

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IW   V+ F I++I     D V  D    +Y  LS  G DV  D+  E+ G +    +LL
Sbjct: 482 IWSKEVSVFDIAIIISNTKDSVQNDFGSALYEILSACGIDVLLDERDERFGVKMKDFELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR-------EDMSLEEVINYAS 439
           GF   +IVG K +++ KVE+  R    +       +++ LEE++   +
Sbjct: 542 GFHSALIVG-KGLNEGKVELIKREGLKKYELCATDKEILLEEILKIIA 588


>gi|313126275|ref|YP_004036545.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Halogeometricum
           borinquense DSM 11551]
 gi|312292640|gb|ADQ67100.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Halogeometricum
           borinquense DSM 11551]
          Length = 641

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 152/449 (33%), Gaps = 45/449 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQH----SKGIYSWLPLGQKALDNVNAIIRE 59
           S+  L    E   +AE   H+ + R   +         G+  + P G++ L  ++     
Sbjct: 224 SEKDLKEYMELRAEAEERDHRKIGREMDLFSIPEVTGPGLPLYHPNGKRILSELSEFAES 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                    +  P L   +LW +SG YD+Y  +M  L D ND+     P +      IF 
Sbjct: 284 LNLDADYEPVETPHLFRTELWKKSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFD 342

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            +  SYR+LP  +++    +R E R    G+ R   F + D + F   PE  +    ++ 
Sbjct: 343 QNSWSYRDLPVRYFEDGKVYRKEQRGELSGLSRVWSFTIDDGHLF-CRPEQIEQEIRQVM 401

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            S   +    GL++  +   + P     S E    +++    V  +++      P +   
Sbjct: 402 NSIYEVLDTFGLEA-HVALATRPEKSVGSDEIWEQSESQLRSVLENQNIDYDLEPGDG-- 458

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      +    D+L          ++               
Sbjct: 459 ------------------AFYGPKIDFSFEDALGRKWDGPTVQVDFNMPER--------F 492

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G D ++H  V +     G+      V+    +GK   W   +AP ++ ++ I   
Sbjct: 493 DLTYTGEDNEEHRPVMIHRALYGSYERFFMVLIEHFNGKFPFW---LAPEQVRILPI--- 546

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    ++   L      V  +D    +G +         P  +IVG        + 
Sbjct: 547 SDDQLGYAHRVKNELGD--FRVSVEDRSWTLGRKIREGQEDNVPYMLIVGENEEESGTIS 604

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R     +D+S++    +    +   R
Sbjct: 605 VRDRQEREEQDVSIDAFREHLEAEYDEKR 633


>gi|317181405|dbj|BAJ59189.1| threonyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 612

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I    +     
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHAF 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|227514714|ref|ZP_03944763.1| proline--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|227086918|gb|EEI22230.1| proline--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 581

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 165/314 (52%), Gaps = 16/314 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 9   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY++YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 69  MDKAGAVEMLLPGLLPADLWKESGRYEAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 129 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A  GE  +  +       +    T F 
Sbjct: 189 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGEDVIAYTDGDYAANLEKATTKFT 248

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               +    E                   +   ++   + G+E   I       S+   A
Sbjct: 249 PTKQIGEEAELTKKATP-----------GAHTVDEAAESLGLEASQILK-----SMVFLA 292

Query: 301 TFKGADGKDHYVQM 314
            F+G + K   V M
Sbjct: 293 KFEGEELKPVMVLM 306



 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 12/247 (4%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG  +  +  +LAD         +  ++  + + +  +  I +  +   +      
Sbjct: 344 SLGPIG--VKEDVTILADQ------HLQGMINMALGANDDGYHYINANFNRDFKVDQFGD 395

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +    E   D LP        GIE+GHIF  GT YS    AT    +G+D  + MG Y
Sbjct: 396 FRTVQEGETAPDGLPIKFTN---GIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCY 452

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E + D  G++WP +VAPF I +I + A  +      E+I A L + G 
Sbjct: 453 GIGVSRLLSAISEQNADENGLVWPQAVAPFDIHVIPVNAKKEDQMAMAEEITANLEEAGY 512

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P++V VG K   +  VEIK R TG   ++  EE+   
Sbjct: 513 EVLVDDRKERAGVKFADADLIGVPIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEELATN 571

Query: 438 ASHRFSN 444
            +     
Sbjct: 572 IAILLKQ 578


>gi|284925806|gb|ADC28158.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 569

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 155/282 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + S+  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSYIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++              
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAK 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                      + + +   +    + L      N   + + +
Sbjct: 242 KTCQDERPEANYASKFHTPNIKTIDSLAQFFKINAFYTIKAV 283



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 392 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 451

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A   E+SHD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 452 LAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDR 511

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 512 NERFGVKMNDFELMGFPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 568


>gi|157165397|ref|YP_001466693.1| prolyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|171855061|sp|A7ZD35|SYP_CAMC1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112800481|gb|EAT97825.1| prolyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 566

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 99/231 (42%), Positives = 143/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK++ P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG+   D ++ +++EE
Sbjct: 1   MKFSKFYAPTTKEAPKDASLPSHQFLIRGGFVEQIGSGLYNYLPLGKIMHDKISRVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+S   + S +LW +SGRY+ +GKE+LR  DR D   +  PT+EE    + R 
Sbjct: 61  MNEAGALEVSFSVVTSGELWKQSGRYNVFGKELLRFKDRKDNDFVISPTNEEAAVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REF MKD YSF  + E  K  ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFTMKDGYSFHSSKEDLKREFDLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  + C +      
Sbjct: 181 YSKIFTRLGLNFRAVEADSGAIGGSGSKEFMVLASNGEDDILCCEACRYAA 231



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 96/230 (41%), Gaps = 3/230 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G   V    D       +     ++       V           D+   K  D  P  
Sbjct: 338 PVGLKDVKFFIDNELRGANNMICGANEKDYHFVGVSVSGFNEERFKDLVKVKEGDKCPVC 397

Query: 275 KRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  +GIEVGHIF  G KYS  M+AT+   +GK     MG YGIG  R++A +IE+S
Sbjct: 398 GGNLKLSKGIEVGHIFQLGDKYSAAMNATYLDENGKVKPFLMGCYGIGISRLIAVMIEAS 457

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD KG IW    APF + +I     D+       ++Y  L K G  V  DD  E+ G + 
Sbjct: 458 HDEKGCIWKKECAPFDVEIIISNLKDEAGVKFAFELYESLKKAGVSVIIDDRNERFGVKM 517

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +L+GFP  ++VG K  ++ KVE   R    +E +   +         
Sbjct: 518 NDFELIGFPYALLVG-KEFANGKVEFITRDGLSKETIEANDAFRKIKESL 566


>gi|315653428|ref|ZP_07906350.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|315489353|gb|EFU78993.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 487

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 16  MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 76  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 136 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 196 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 240



 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 7/154 (4%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++A  G +G        V A   +  +        + +     + D      +I   + 
Sbjct: 341 IVKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFK 393

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + 
Sbjct: 394 VNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPII 453

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           MGSYGIG  R+++A++E      GI        F
Sbjct: 454 MGSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF 487


>gi|322379566|ref|ZP_08053903.1| prolyl-tRNA synthetase [Helicobacter suis HS1]
 gi|321147960|gb|EFX42523.1| prolyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 576

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 144/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F P L+E P+DA + SH+ +++ G I Q   GIYS+LPLGQK L  +  II+EE
Sbjct: 1   MRYSTLFAPSLKEPPKDAVLKSHQFLIQAGFIKQIGSGIYSFLPLGQKVLSKIKNIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E     +  A LW +S R   YG+E+L   DR +   + GPTHEEV  ++ + 
Sbjct: 61  MDKHGAQECMFNFITPASLWEQSKRLHKYGQELLVFKDRKNYPFVLGPTHEEVAVEVVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  KFRDE+RPRFG+MR+REF+MKD YSF ++ +  +  +N M   
Sbjct: 121 FVQSYKQLPLHLYQIHTKFRDEIRPRFGLMRAREFIMKDGYSFHVSTQDLEREFNAMEQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL    ++A+SG IGG+ S EF+VLA+ GE  +    +     
Sbjct: 181 YSRIFTRLGLNFRAVQADSGAIGGNKSKEFVVLAECGEDSIIACTNCSYAA 231



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 1/177 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            +      +      + IEVGHIF  G  Y+  + A F   +G+  + +MG YGIG  R+
Sbjct: 401 VQDLCPECQGNLEQHKSIEVGHIFQLGNTYAKNLGANFLNTEGEATFFEMGCYGIGVSRL 460

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + A++E   D KG +W    APF++ L+   + D       + +Y  L + G DV  DD 
Sbjct: 461 LPAILEQKSDSKGCVWSLESAPFEVVLVVANSKDTELIALAQTLYQELLEAGVDVLLDDR 520

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             + G++    + +G    +I+G K      +E+  R    ++ +   ++I+    R
Sbjct: 521 NLRFGAKMIDFERIGSSYALIIG-KEAKSGHLELIKREGLSKQIVERVQLIDILKAR 576


>gi|261328034|emb|CBH11011.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 799

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/531 (16%), Positives = 165/531 (31%), Gaps = 102/531 (19%)

Query: 10  ILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L E  +   +A    H+ + R       H+ S G   WLP G +  + +    R++  R
Sbjct: 276 MLTEWKKLQEEAARRDHRTIGRHQQLFHFHEASPGNAFWLPHGARIYNTLIEFQRKQYRR 335

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S+ LW+ SG +D Y   M  L +   +     P +      +F     
Sbjct: 336 RGFEEVVSPNMFSSRLWMVSGHWDKYADNMF-LINVEKEDHGMKPMNCPGHCLMFAMQPH 394

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  +    +  R+EL     G+ R R F   DA+ F    +  K   +   +   
Sbjct: 395 SYRELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRMDQVKDEIHSALIFLK 453

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP--------- 233
            ++  LG K   ++  + P     S E    A++       S   +   +P         
Sbjct: 454 DVYDVLGFKFF-LKHSTRPENKLGSDEMWDEAESYLQAALNSFCGIPDELPDPFNKGSTF 512

Query: 234 ---------------------------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                                      S   D     +     E+ T   A      +  
Sbjct: 513 VYDGRKESVKKLRAMLKKRGDKKNDENSPADDVWPGPTHEDAWEENTGDGAFYGPKIDIV 572

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA------------TFKGAD-------- 306
           + D+L    + +   ++      FG KY+LP +A              K  +        
Sbjct: 573 VEDALRRRHQCATIQLDFNLPKRFGLKYTLPSNAAGDDGPAPKATECHKDPNAELKADKP 632

Query: 307 ------------------------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                                          +   V +     G++    A++   + G 
Sbjct: 633 EGKVETAAGAPKSSYEKAAHELNIDQRLDANQARPVMIHRAIFGSLERCIAILCEHYGGD 692

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              WP  ++P ++ ++ +   +       + +       G     D+    +  +   A+
Sbjct: 693 ---WPFWLSPRQVIVVPVSLENAA---YAQTVRDTFFAAGFFADVDNGTATLEKKIRNAE 746

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           L  +   ++VG        V ++ R        +L+E + +         P
Sbjct: 747 LARYNFILVVGQAEQEGQSVNVRTRDNRRHGTKTLDEALQWLRELADKYDP 797


>gi|253828011|ref|ZP_04870896.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253511417|gb|EES90076.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 578

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 108/231 (46%), Positives = 150/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F+P  +E P+D  + SH+ +LR G I Q   GIY++LPLG+K LD ++ I++ +
Sbjct: 1   MRFSKFFIPTFKEVPKDVILKSHEYLLRGGFIQQIGSGIYNFLPLGKKVLDKISRIVKNK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRYD YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDEAGANEVLLGCVTPASLWQASGRYDRYGKELLRFKDRKENEFVFGPTHEETITELAKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 YIKSYKQLPLHFYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSNYEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF  LGL    + A+SG IGG  S EF+VLA++GE  +          
Sbjct: 181 YSAIFLELGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTICVCDSCSYAA 231



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 2/180 (1%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                  + K    +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG  R++
Sbjct: 398 DYCKECHKGKLYFTKGIEVGHIFQLGEKYSQAMEATFLDEEGKAKPFVMGCYGIGISRLL 457

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA+IE +HD KG+ W  + APF + ++     D+   +  EKIY  LS  G +   DD  
Sbjct: 458 AAIIEQNHDEKGMKWTATTAPFLLDIVVSNIKDENQSELAEKIYHALSANGIECLLDDRK 517

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+ G++ A  +L+G P  +IVG K V + K+E+  R    + ++ + +  +    +   N
Sbjct: 518 ERYGAKMADFELIGIPYALIVG-KGVEEGKIELVCRKNLEKINLEIADFESLI-EKIKQN 575


>gi|220912797|ref|YP_002488106.1| threonyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|254783507|sp|B8H9E8|SYT_ARTCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219859675|gb|ACL40017.1| threonyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 669

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/464 (17%), Positives = 142/464 (30%), Gaps = 60/464 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L   QE   +AE   H+ +     +     +   G+  + P G      +    R+
Sbjct: 242 TKDALKAYQERIAEAERRDHRKLGSELDLFSFPDELGSGLPVFHPKGGIIRKEMEDYSRQ 301

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYG 107
                G   +  P +    L+  SG  D Y + M      +             +     
Sbjct: 302 RHVEAGYEFVYTPHITKGHLYEVSGHLDWYKEGMFPAMHVDAELNEDGTVRKPGQDYYLK 361

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +  +   IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +  T
Sbjct: 362 PMNCPMHNLIFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CT 420

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVF 222
            E  K    K     L +    GL    +   +      +G D + E    A     +V 
Sbjct: 421 REQMKEELTKTLTFVLDLLKDYGLNDFYLELSTKDPEKYVGEDAAWE---EATRTLAEVA 477

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                   P P                       A      + +  D+L    ++S   +
Sbjct: 478 QESGLELVPDPG--------------------GAAFYGPKISVQAKDALGRTWQMSTIQL 517

Query: 283 EVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++ L   A    ADG +   V +     G++     V+   + G    W 
Sbjct: 518 D----FNLPERFELEFQA----ADGSRQRPVMIHRALFGSVERFMGVLTEHYAGAFPAW- 568

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++  I +    +   +    +  +L   G     D   ++   +   A     P
Sbjct: 569 --LAPVQVVGIPVA---ETFNEYMFDVVDQLKAAGIRAEVDTSSDRFPKKIRTASKDKIP 623

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +I G        V  + R       + + E +   +    N 
Sbjct: 624 FVLIAGGDDAEAGAVSFRFRDGSQDNGVPVAEAVKRITEAVRNR 667


>gi|325997000|gb|ADZ49208.1| Threonyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 573

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 168 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 227 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 285

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 286 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 344

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       E    A     +    +  +D+ I      F     
Sbjct: 345 MKAFDFSY-EMELSTRPAKSIGDDEVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 402

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 403 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNE--- 436

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 437 RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 490

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 491 ALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 550

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 551 AQYKMPLKEFLNMVESKMQE 570


>gi|224419073|ref|ZP_03657079.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313142583|ref|ZP_07804776.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313131614|gb|EFR49231.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 573

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 108/231 (46%), Positives = 150/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F+P  +E P+D  + SH+ +LR G I Q   GIY++LPLG+K LD ++ I++ +
Sbjct: 1   MRFSKFFIPTFKEVPKDVILKSHEYLLRGGFIQQIGSGIYNFLPLGKKVLDKISRIVKNK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRYD YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDEAGANEVLLGCVTPASLWQASGRYDRYGKELLRFKDRKENEFVFGPTHEETITELAKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 YIKSYKQLPLHFYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSNYEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF  LGL    + A+SG IGG  S EF+VLA++GE  +          
Sbjct: 181 YSAIFLELGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTICVCDSCSYAA 231



 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 1/175 (0%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                  + K    +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG  R++
Sbjct: 398 DYCKECHKGKLYFTKGIEVGHIFQLGEKYSQAMEATFLDEEGKAKPFVMGCYGIGISRLL 457

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA+IE +HD KG+ W  + APF + ++     D+   +  EKIY  LS  G +   DD  
Sbjct: 458 AAIIEQNHDEKGMKWTATTAPFLLDIVVSNIKDENQSELAEKIYHALSANGIECLLDDRK 517

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           E+ G++ A  +L+G P  +IVG K V + K+E+  R    + ++ + +  +    
Sbjct: 518 ERYGAKMADFELIGIPYALIVG-KGVEEGKIELVCRKNLEKINLEIADFESLIEK 571


>gi|72388976|ref|XP_844783.1| threonyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|62176044|gb|AAX70165.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei]
 gi|70801317|gb|AAZ11224.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 799

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/531 (16%), Positives = 165/531 (31%), Gaps = 102/531 (19%)

Query: 10  ILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L E  +   +A    H+ + R       H+ S G   WLP G +  + +    R++  R
Sbjct: 276 MLTEWKKLQEEAARRDHRTIGRHQQLFHFHEASPGNAFWLPHGARIYNTLIEFQRKQYRR 335

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S+ LW+ SG +D Y   M  L +   +     P +      +F     
Sbjct: 336 RGFEEVVSPNMFSSRLWMVSGHWDKYADNMF-LINVEKEDHGMKPMNCPGHCLMFAMQPH 394

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  +    +  R+EL     G+ R R F   DA+ F    +  K   +   +   
Sbjct: 395 SYRELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRMDQVKDEIHSALIFLK 453

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP--------- 233
            ++  LG K   ++  + P     S E    A++       S   +   +P         
Sbjct: 454 DVYDVLGFKFF-LKHSTRPENKLGSDEMWDEAESYLQAALNSFCGIPDELPDPFNKGSTF 512

Query: 234 ---------------------------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                                      S   D     +     E+ T   A      +  
Sbjct: 513 VYDGRKESVKKLRAMLKKRGDKKNDENSPADDVWPGPTHEDAWEENTGDGAFYGPKIDIV 572

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA------------TFKGAD-------- 306
           + D+L    + +   ++      FG KY+LP +A              K  +        
Sbjct: 573 VEDALRRRHQCATIQLDFNLPKRFGLKYTLPSNAAGDDGPAPKATECHKDPNAELKADKP 632

Query: 307 ------------------------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                                          +   V +     G++    A++   + G 
Sbjct: 633 EGKVEAAAGAPKSSYEKAAHELNIDQRLDANQARPVMIHRAIFGSLERCIAILCEHYGGD 692

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              WP  ++P ++ ++ +   +       + +       G     D+    +  +   A+
Sbjct: 693 ---WPFWLSPRQVIVVPVSLENAA---YAQTVRDTFFAAGFFADVDNGTATLEKKIRNAE 746

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           L  +   ++VG        V ++ R        +L+E + +         P
Sbjct: 747 LARYNFILVVGQAEQEGQSVNVRTRDNRRHGTKTLDEALQWLRELADKYDP 797


>gi|308182296|ref|YP_003926423.1| threonyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308064481|gb|ADO06373.1| threonyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 612

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +  +  
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEY-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +   A+    P+ +++G++ +    + I+ R   
Sbjct: 530 ALKLKEVLKKRNIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEMETENLSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|303244992|ref|ZP_07331315.1| prolyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302484644|gb|EFL47585.1| prolyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 471

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 98/450 (21%), Positives = 175/450 (38%), Gaps = 82/450 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  IL+     AEI           +    KG   +LP G K       IIR   +
Sbjct: 8   FSEWYGNILE----RAEIYD---------LRYPIKGCGVYLPYGFKIRKYAFEIIRNMLD 54

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
            TG  E   P L   DL  + G     +  E+  +        D  +   PT E  +  +
Sbjct: 55  ETGHDEALFPMLIPEDLLAKEGEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETPIYYM 114

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSYNK 176
            +  IK + +LP   YQ+   FR E +    ++R RE    K+A++   T E +++   +
Sbjct: 115 MKLWIKVHTDLPIKVYQVVNTFRYETKHTRPLIRLREIMTFKEAHTAHATKEDAENQVKE 174

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y   F  LG   IP      P                         +  FP     
Sbjct: 175 AINIYKNFFDELG---IPTIISKRPE------------------------WDKFPGAEYT 207

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             FD I                                     + +++G +   G  ++ 
Sbjct: 208 MAFDTIFPDG---------------------------------KTMQIGTVHNLGQNFAK 234

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                F+ ADG   Y     YGI + RV+A++I    D KG+I P +VAP +I +I +  
Sbjct: 235 TFELEFETADGGKDYAYQTCYGI-SDRVIASIIALHGDEKGLILPPNVAPIQIVIIPLLF 293

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K  +++  +  E++Y  L + G  V  DD   + G +F   +L G P+++ +G + + + 
Sbjct: 294 KGKEEIAMNKAEEVYNTLKEKGFRVKLDDRDIRPGRKFNDWELKGAPIRIELGPRDIENK 353

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           K+ +  R TG +  ++ +++++  ++  ++
Sbjct: 354 KITLFRRDTGEKFQINEDDLLDGINNTMNS 383


>gi|85093975|ref|XP_959801.1| threonyl-tRNA synthetase [Neurospora crassa OR74A]
 gi|28921255|gb|EAA30565.1| threonyl-tRNA synthetase [Neurospora crassa OR74A]
          Length = 788

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 155/488 (31%), Gaps = 72/488 (14%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD  +   +  L      + S G   WLP G +  + +   I+EE
Sbjct: 307 MAAHKKFL--EEAAKRDHRLIGKQQELF--YFEECSPGSAMWLPHGMRINNAIMEYIKEE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +  LW +SG    Y  +M  L D + +     P +      +FR 
Sbjct: 363 YWKRGYDEVMTPNMFNVALWEQSGHLAHYKDDMFIL-DVDKEQFGLKPMNCPAHAMMFRH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S++ LP       +  R+E      G+ R R F   DA+ F    +  K     +F 
Sbjct: 422 RDRSHKELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-CREDQIKAEVADLFD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +  LGL    ++  + P       E    A+    +                   
Sbjct: 481 FMKSFYGMLGLTF-KLKLSTRPEKYMGEIETWDRAEARLKEALNE--------------- 524

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             + +     E      A      +  + D L    + +   ++      F  +Y    +
Sbjct: 525 -FVAATGGTWELNEGDGAFYGPKIDIAVLDCLNRPWQCATIQLDFQQPINFSLEYMTADA 583

Query: 300 ATFKGAD--------------------------------------GKDHYVQMGSYGIGA 321
              +  D                                      G    V +     G+
Sbjct: 584 QAKQDEDKAASKAAKPEAPKEEEEAPKEGEEKKKKALLVKKPLTAGCARPVMIHRAMAGS 643

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +    A++     GK   WP  ++P ++ +I +        D  +++   L K    V  
Sbjct: 644 IERFTAILAEHFAGK---WPFWMSPRQVMVIPVGMG---FLDYAKEVALTLKKEKIHVDV 697

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM----SLEEVINY 437
           D  G  +  +   A L  +    +VG    ++ KV I++R     +      SLEE +  
Sbjct: 698 DSSGNTLQKKIRSAQLAQYNFIFVVGDDEKTNRKVNIRYRDDTSTQARDVPYSLEEAVEK 757

Query: 438 ASHRFSNN 445
                ++ 
Sbjct: 758 LRALKADR 765


>gi|308061413|gb|ADO03301.1| threonyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 612

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 157/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQMEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I    +  R  
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHRAF 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVGTEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|145594327|ref|YP_001158624.1| threonyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|145303664|gb|ABP54246.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Salinispora
           tropica CNB-440]
          Length = 671

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 142/444 (31%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +   +R     
Sbjct: 250 KAYLRLLEEAARRDHRKLGADLDLFS-FPDEIGSGLPVFHPKGGVLKRTMEDYVRSRHIE 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M                +  +   I+RS  +
Sbjct: 309 EGFDYVGTPHISKEGLFHTSGHLPYYADGMFPPMQFEGADYYLKAMNCPMHNLIYRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R F   D++S+  T E +      +    L
Sbjct: 369 SYRELPMRLFEFGSVYRYEKSGVIHGLTRVRGFTQDDSHSY-CTKEQAPAEIKHLLAFVL 427

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+    +   +               DT   +   S +              D 
Sbjct: 428 GLLQDFGITDFFLELSTRD-------------DTKPDKFVGSAEDWATATAVLEQCARDT 474

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +       A      + +  D++    ++S    +      FG +Y        
Sbjct: 475 ---GLELVPDPGGAAFYGPKISVQAKDAIGRTWQMSTIQYDFNQPAGFGLEY-------- 523

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG +   + +     G++     V+   + G    W   +AP ++  I I+A     
Sbjct: 524 QAADGTRQQPIMIHCAKFGSIERFIGVLTEHYAGAFPAW---LAPVQVVGIPIRA---EH 577

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +   A L   G     D   +++  +   A     P  VI G   V+   +  ++R
Sbjct: 578 TEYLDGFVAALRAAGIRAQVDAGDDRMQKKIRTAQQQKIPFMVIAGDDDVAAGTMSFRYR 637

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  +   E +N+     ++ 
Sbjct: 638 DGSQRNGVPAAEAVNHVLDVVNSR 661


>gi|152989860|ref|YP_001355582.1| threonyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|151421721|dbj|BAF69225.1| threonyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 613

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 159/460 (34%), Gaps = 57/460 (12%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L +++E   RD      ++ L      +   G+  WLP G +    + +++   
Sbjct: 195 KSLKDYLTMIEEAKKRDHRKLGSEMELFM-FSEEVGAGLPIWLPKGARLRSKLESLLFAA 253

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEV 113
             + G   +  P +  +DLW +SG Y +Y + M      +D+            P +   
Sbjct: 254 HRKRGYEPVRGPEILKSDLWKKSGHYQNYKENMYFTEICDDETKKETCVEYGIKPMNCVG 313

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              I++S  +SYR LP  F++  +  R E      G+ R REF   DA+ F   PE  K 
Sbjct: 314 HIMIYKSKKRSYRELPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIF-CKPEQIKD 372

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMD 229
              ++      I      K   M   + P   IG D   E    A          +  +D
Sbjct: 373 IVIEVLGFVDEIMRSFNFKY-EMEISTKPKKAIGDDAIWEIATQALKEALDENGHEYGID 431

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +      DI   ++I                               R  + G I  
Sbjct: 432 EGGGAFYGPKIDIKITDAI------------------------------GRKWQCGTI-- 459

Query: 290 FGTKYSLP--MSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               ++LP      F  +D      V +    +G+      ++   + G+   +   +AP
Sbjct: 460 -QVDFNLPERFELEFTDSDNSAKRPVMIHRAILGSFERFIGILIEHYAGEFPFF---IAP 515

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +I  + I           +++  +L ++  D    D  + +  +   A+    P+  I+
Sbjct: 516 TQIIFVPIA---DSHVAYAKELQDKLLQMDVDSEIYDSKDSLNKRIRNAEKQKVPMVAII 572

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G K V    + I+ R    + +++  E       + S  R
Sbjct: 573 GDKEVESKSLAIRDRREKTQYNITESEFFTKIKEKLSEVR 612


>gi|331697398|ref|YP_004333637.1| threonyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952087|gb|AEA25784.1| threonyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 682

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 143/440 (32%), Gaps = 56/440 (12%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           S+  L    E   +AE   H+     L L +    Q   G+  + P G      +    R
Sbjct: 243 SQEALDAYLERVAEAERRDHRRLGAELDLFS-FPDQIGSGLAVFHPKGGIVRKELEDYSR 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRN----------DKAMIY 106
               + G   ++ P +    L+  SG  + Y + M      D             +    
Sbjct: 302 RRHEQAGYEFVNTPHITKGQLFRTSGHLEWYEEGMYPGMILDEERDADGNVRKPGQDYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   IF +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  
Sbjct: 362 KPMNCPMHNLIFDARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCS 224
           T E  +     +    L +    GL    +   +  P     S E    A     +V   
Sbjct: 421 TEEQMEGEIASLLQFVLELLRDYGLDDFYLELSTRNPEKSIGSDEAWERATNVLRKVAEE 480

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                   P                       A  +   + +  D++    ++S   +++
Sbjct: 481 TGLHLVDDPG--------------------GAAFYAPKISVQAKDAIGRTWQMSTIQVDL 520

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                            +  +DG +   V +     G++    AV+   + G    W   
Sbjct: 521 MLPDR--------FDLEYTASDGSRKRPVMIHRALFGSIERFFAVLLEHYAGAFPAW--- 569

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++  I +       R+  E++ A L + G  V  D   +++  +     L   P  
Sbjct: 570 LAPVQVVGIPVTDD---QREYVEQVAATLRERGVRVEVDSGDDRMQKKIRTHTLQKVPFM 626

Query: 404 VIVGSKFVSDSKVEIKHRLT 423
           ++VG++ V    V  + R  
Sbjct: 627 LVVGARDVEAGAVSFRFRDG 646


>gi|150865919|ref|XP_001385328.2| threonyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054]
 gi|149387175|gb|ABN67299.2| threonyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054]
          Length = 730

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 148/441 (33%), Gaps = 41/441 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A    H+ + +       ++ S G   WLP G +  + +   IR+E    G  E+  P
Sbjct: 315 AEAAERDHRRIGKEQELFFFNEMSPGSAFWLPHGTRIYNALVQFIRDEYQVRGFDEVITP 374

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG + +Y + M    D   +     P +      IF+S  +SYR LP+  
Sbjct: 375 NMFNHKLWETSGHWGNYKENMFTF-DVEKETFGLKPMNCPGHCVIFKSRERSYRELPWRV 433

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +         F    +++   G +
Sbjct: 434 ADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCTT-DQIGSEIKGAFDFLNKVYGTFGFQ 492

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P                  + +  +               +        E 
Sbjct: 493 F-KMELSTRP------------------EKYVGEIETWNSAEKMLEKSLNEFKGEGGWEL 533

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDH 310
                A      +  + D+L    + +   ++    F    ++ L   A           
Sbjct: 534 NPGDGAFYGPKIDIMISDALNRWFQCATIQLD----FQLPNRFELEYKAETNDKGSSTSR 589

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++   + GK   WP  ++P +I ++ +        +  +K+  
Sbjct: 590 PVMIHRAILGSVERMTAILIEHYKGK---WPFWLSPRQILIVPVGPK---YYEYGQKLQK 643

Query: 371 RLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGI 425
            L+ K       D  G  +  +     L  +    IVG +    + V +++R      G 
Sbjct: 644 ELNDKYSFYADVDVSGNTLPKKIRTGQLYKYNFIFIVGDEEEQSASVNVRNRDIPEEQGK 703

Query: 426 REDMSLEEVINYASHRFSNNR 446
              +  +EV+          R
Sbjct: 704 NAMVKFDEVVKQLVSLRDEKR 724


>gi|238504300|ref|XP_002383381.1| threonyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|317138130|ref|XP_001816697.2| threonyl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40]
 gi|220690852|gb|EED47201.1| threonyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 721

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 82/468 (17%), Positives = 154/468 (32%), Gaps = 55/468 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 281 KQMQEHLKFLEE----AEKRNHVKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQTLLR 336

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F
Sbjct: 337 SEYRKRGYQEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLF 395

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 396 GHRERSYRELPLRLADFGVLHRNEASGALSGLTRVRKFQQDDTHIF-CTQDQITSEIEGL 454

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ I   + 
Sbjct: 455 FDFLQSIYGLFGFTF-KLKLSTRPEKYLGELETWNYAEEQLKAAMTKFKGDDWTIDEGDG 513

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--- 294
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 514 AFYGPKIDITIA-------------------DALKREFQCATIQLDYQAPINFKLEYMSN 554

Query: 295 -----SLPMSATFKGAD-------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                S   + + +G +       G+   V +    IG+      ++     GK   WP 
Sbjct: 555 EKADKSQAAAESAEGENKSSEPGPGRARPVVIHRAIIGSFERFLGILTEHFGGK---WPF 611

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            ++P +I ++ +        D  E++   L     +V  D  G  +  +     L  +  
Sbjct: 612 WISPRQILIVPVMP---AVNDYVEELQTILRGDKLNVDIDISGNTMQKKIRTGQLAQYNF 668

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIRE----DMSLEEVINYASHRFSNNR 446
             +VG++      V I++R     +     + LEE            R
Sbjct: 669 IFVVGAQEKEARTVNIRNRDDPATQKQGVMIPLEEAREKLRALRKERR 716


>gi|51598972|ref|YP_073160.1| threonyl-tRNA synthetase [Borrelia garinii PBi]
 gi|73919774|sp|Q660F3|SYT_BORGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51573543|gb|AAU07568.1| threonyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 582

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 160/448 (35%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLIFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G   +  P +  + LW  SG  + Y   M    + +       P +      I+ 
Sbjct: 227 EHSKNGYDILFTPHVGKSWLWQTSGHLNFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYN 286

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LPF + ++   +R E      G+MR+R F   DA+    T         ++ 
Sbjct: 287 TGKHSYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHII-CTHSQVVDEIKEVL 345

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + ++ + G  S+     + P                  +   +    +  +      
Sbjct: 346 RFAIYMWSKFGFNSLKAYLSTKP-----------------DKSVGNNSDWEMSLKVLKEA 388

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D      I +   A Y    D+      DSL    ++S    +    F    ++++  
Sbjct: 389 LSDFEVPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM-- 439

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   DGK+     +    +G++     ++   + G   +W   ++  +  +I +   
Sbjct: 440 --TYTSEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSHVQAVIIPVNN- 493

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  D   K++ +    G  +  D+   ++ ++         P   I+G +   + ++ 
Sbjct: 494 --IVEDYTIKVFNKFKNAGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREAIEERIS 551

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R       + L+E +     +  + 
Sbjct: 552 IRTRTNEQINGIELDEALKLILLKVRDK 579


>gi|261838989|gb|ACX98754.1| threonyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 612

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 154/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A +   +                        
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATSALKEALKEHRIGYKIDEGGG-------- 434

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D+L    +     +++        ++ L  +     
Sbjct: 435 ------------AFYGPKIDIKITDALKRKWQCGTIQVDM----NLPERFKLAFTNE--- 475

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I    +     
Sbjct: 476 RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHAF 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEVLKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|118617676|ref|YP_906008.1| prolyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|152112934|sp|A0PQB8|SYP_MYCUA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118569786|gb|ABL04537.1| prolyl-tRNA synthetase ProS [Mycobacterium ulcerans Agy99]
          Length = 582

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 134/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I     G+YSWLPLG + L N+  +IREE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVGPGLYSWLPLGLRVLRNIERVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLEDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ+K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLTLYQIQIKYRDEARPRAGILRAREFVMKDSYSFDIDSGGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFDRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 2/164 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V ARGIE+GHIF  G KY+   +A   G DGK   + MGSYGIG  R+VA + 
Sbjct: 409 PDGAGQLVMARGIEIGHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD  G+ WP  +APF + L+ I   D   R     +   L  +G +V  DD     G
Sbjct: 469 EQHHDNLGLRWPAEIAPFGVHLV-IANKDAEARAGAIGLAGELDGLGVEVLLDDRQASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +F  A+LLG P  V+VG +  +D  VE++ R  G   ++++ +
Sbjct: 528 VKFKDAELLGMPWVVVVG-RGWADGVVELRDRFGGQTRELTVGD 570


>gi|197294184|ref|YP_001798725.1| threonyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|226701405|sp|B1V8W6|SYT_PHYAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171853511|emb|CAM11353.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 641

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 160/444 (36%), Gaps = 35/444 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD +  + KL L      +   G+  WLP G      V   I +++    
Sbjct: 229 YLKLLEERKERDHKRLNKKLDLFM-FSQEVGLGLPFWLPKGATLRRIVERYIVDKELSHQ 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
              +  P + + +L+  SG  + Y + M  +    N + ++  P +      I++   +S
Sbjct: 288 YHHVYTPIMANVELYRTSGHLEHYSQNMFPVMQLENKEKIVLRPMNCPHHMMIYKKSPRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP    ++ +  R E      G+ R RE  + DA++F + P+  +    K+    L 
Sbjct: 348 YKELPLRIAELGMMHRFEKSGAVSGLQRVREMNLNDAHNF-VRPDQIEEEIKKIINLILE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +     R                  D  + + +   D M       N     I 
Sbjct: 407 VYRDFKITKYEFRLSYR--------------DPQDKEKYFPDDNMWQHAE--NILKKTIQ 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            LN    +     A      + ++  +L   + +S   ++    F    K+      TF 
Sbjct: 451 ELNLPFREAIGDAAFYGPKLDVQVLTALGNEETLSTIQLD----FLLPQKF----DLTFI 502

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            A+ K    V +    +  +    + +   + G   +W   +AP +I LI +     V  
Sbjct: 503 DANNKHCRPVVIHRAIVSTLERFLSHLIEENKGVFPLW---LAPVQILLIPVS--SSVNL 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I   L   G     +     +G +   A  L  P Q++VG   ++ + +  +   
Sbjct: 558 KYTQEIKELLLSQGLRAEINSKEATLGYKIREAQELKIPYQIVVGDNEIAKNLITFRKYG 617

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
              +   ++E  I+  +      R
Sbjct: 618 QKNQTTTNIETFISSLNQEIMEKR 641


>gi|226306390|ref|YP_002766350.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|259516659|sp|C0ZZ26|SYT_RHOE4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226185507|dbj|BAH33611.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 685

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 71/455 (15%), Positives = 141/455 (30%), Gaps = 52/455 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 251 YLELLAEAERRDHRKLGTELDLFS-FPDELGSGLPVFHPKGGIIRTEMENYSRSRHIEAG 309

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              ++ P +    L+  SG  D Y   M      +++                 P +  +
Sbjct: 310 YEFVNTPHITKGHLYEVSGHLDWYRDGMFPAMHVDEELNEDGTVRKPGQDYYLKPMNCPM 369

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR+  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  + 
Sbjct: 370 HNLIFRARGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIY-CTREQMRD 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                    L +    GL    +   +  P     S +    A     +V  +      P
Sbjct: 429 ELTTTLQFVLNLLKDYGLDDFYLELSTKNPDKFVGSDDVWEEATATLAEVGEASGLTLVP 488

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + ++ D+L    ++S   ++    F   
Sbjct: 489 DPG--------------------GAAFYGPKISVQVKDALGRTWQMSTIQLD----FNLP 524

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       + G DG K   V +     G++     V+   + G    W   +AP ++ 
Sbjct: 525 ERF----ELEYTGNDGVKTRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVV 577

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +    +   D    +  +L   G     D   +++  +         P  ++ G + 
Sbjct: 578 GIPVA---EAFADHLFDVTKKLKAAGVRAEVDFSDDRMQKKIRNHTTQKVPFMLLAGERD 634

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V    V  + R       + +++ +   +      
Sbjct: 635 VEAGAVSFRFRDGTQINGIPVDDAVRIITEWIGRR 669


>gi|118474251|ref|YP_891864.1| prolyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|152016592|sp|A0RNT1|SYP_CAMFF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118413477|gb|ABK81897.1| prolyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 567

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 99/231 (42%), Positives = 144/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K ++P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG++ L  V  I+R+E
Sbjct: 1   MKFTKLYVPTTKEAPKDATLPSHQFLIRAGFVAQIGSGLYNFLPLGKRVLRKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +   +LW +S RY  +GKE+LRL DR D   +  PTHEE + D+ R 
Sbjct: 61  MDKAGANEVALSFVVPGELWKQSRRYFKFGKELLRLKDRKDNDFLLAPTHEESIVDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI LKFRDE RPRFG++R REF+MKD YSF  +    K  ++ M  +
Sbjct: 121 KVTSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFIMKDGYSFHASEADLKREFDLMETT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  +  S       
Sbjct: 181 YTKIFSRLGLNFRAVEADSGAIGGSGSKEFMVLAKNGEDDILISDASNYAA 231



 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G +YS  M ATF   +GK     MG YGIG  R+VA ++E+SHD KG I
Sbjct: 406 KGIEVGHIFQLGVRYSETMGATFLDENGKSKPFFMGCYGIGVSRLVAVMVEASHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W    APF + +I     D         + + L   G +V  DD  E+ G + A  +L+G
Sbjct: 466 WKKECAPFMVHIIVSNIKDTEQMQFALNLESNLESSGVEVLLDDRNERFGVKMADFELIG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            P  V+VG K + +++VE   R    +  +S +E++       
Sbjct: 526 VPFGVVVG-KGLQNAEVEFIKRDGLEKVKVSSDEILGKLKEII 567


>gi|317176942|dbj|BAJ54731.1| threonyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 612

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 155/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FNDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEC-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +   A+    P+ +++G++ +    + I+ R   
Sbjct: 530 ALKLKEELKKRDIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEMESEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|210134324|ref|YP_002300763.1| threonyl-tRNA synthetase [Helicobacter pylori P12]
 gi|238065114|sp|B6JPM2|SYT_HELP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|210132292|gb|ACJ07283.1| threonyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 612

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 157/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       E    A +   +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDEVWEKATSALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNE--- 475

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 476 RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEVLKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|163840754|ref|YP_001625159.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162954230|gb|ABY23745.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 700

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 142/461 (30%), Gaps = 54/461 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L   QE   +AE   H+ +     +     +   G+  + P G      +    R 
Sbjct: 260 TKDALKAYQERIAEAERRDHRKLGTELDLFSFPDELGSGLPVFHPKGGIIRKEMEDYSRA 319

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYG 107
                G   +  P +  A+L+  SG  D Y   M      +++                 
Sbjct: 320 RHIAAGYEFVYTPHITKANLYEVSGHLDWYRDGMFPPMHVDEELNEDGTVRKPGQDYYLK 379

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +  +   IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +  T
Sbjct: 380 PMNCPMHNLIFRSRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIY-CT 438

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSK 225
            +  K          L +    GL+   +   +  P     S +    A     +V    
Sbjct: 439 RDQMKDELTSTLNFVLGLLKDYGLEDFYLELSTKDPEKYVGSDDVWEEATRTLAEVAAES 498

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                P P                       A      + +  D++    ++S   ++  
Sbjct: 499 GLDLVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD-- 536

Query: 286 HIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
             F    ++       ++ ADG +   V +     G++    AV+   + G    W   +
Sbjct: 537 --FNLPERF----ELEYQAADGSRQRPVMIHRALFGSVERFMAVLTEHYAGAFPAW---L 587

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP ++  I +    +   D    +  +L   G     D   ++   +   A     P  +
Sbjct: 588 APVQVVGIPVA---ETFNDYMADVVGQLRSAGVLAELDISSDRFPKKIRTASKEKIPFVL 644

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           I G   V    V  + R       + + E +        + 
Sbjct: 645 IAGGDDVEAGAVSFRFRDGSQDNGVPVAEAVQRIVRAVQDR 685


>gi|317013544|gb|ADU80980.1| threonyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 612

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ E     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPIWLPKGARLRKRIEDLLSEALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       E    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDEVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ +    + I+ R   
Sbjct: 530 ALKLKEELKKRDIFVEALDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|317179928|dbj|BAJ57714.1| threonyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 612

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFNY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNE--- 475

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 476 RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVESEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|156120539|ref|NP_001095415.1| threonyl-tRNA synthetase, mitochondrial [Bos taurus]
 gi|152941102|gb|ABS44988.1| threonyl-tRNA synthetase-like 1 [Bos taurus]
          Length = 718

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 149/450 (33%), Gaps = 58/450 (12%)

Query: 20  IASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           +  H+ + +       H+ S G   +LP G +  + + A I+ E  R G  E+  PTL S
Sbjct: 299 LRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIKAEYTRRGFSEVKTPTLFS 358

Query: 77  ADLWVESGRYDSYGKEMLRLA----DR------------NDKAMIYGPTHEEVMTDIFRS 120
           A LW  SG ++ Y ++M  L     DR            +   +   P +      +F  
Sbjct: 359 AKLWELSGHWEHYREDMFALQPPGLDRPSSSQSDHSASPHTDTLALKPMNCPAHCLMFAH 418

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP          R E      G+ R R F   DA+ F   P+  +        
Sbjct: 419 RPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEAEIRGCLD 477

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG     M   + P G          A+    Q            P +    
Sbjct: 478 FLHSVYTILGFSF-HMALSTRPSGFLGEPCLWDQAEQVLQQALEEFGAPWDISPGDG--- 533

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  + D+L    +     ++    F    ++     
Sbjct: 534 -----------------AFYGPKIDVHVRDALGRPHQCGTIQLD----FQLPLRF----D 568

Query: 300 ATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I +    
Sbjct: 569 LQYKGQLGALERPVLIHRAVLGSVERMLGVLAESCGGK---WPLWLSPFQVVVIPVGTEQ 625

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   +   +    L   G     D D G  +  +   A L  +  Q +VG +  S   V 
Sbjct: 626 E---EYAREAQQSLRAAGLVGDLDADSGLTLSRRIRRAQLAHYNFQFVVGQREQSKRTVN 682

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           I+ R      +  L E +           P
Sbjct: 683 IRTRDNRRLGERDLAEAVQRLLELQDTRVP 712


>gi|296489553|gb|DAA31666.1| threonyl-tRNA synthetase, mitochondrial [Bos taurus]
          Length = 718

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 149/450 (33%), Gaps = 58/450 (12%)

Query: 20  IASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           +  H+ + +       H+ S G   +LP G +  + + A I+ E  R G  E+  PTL S
Sbjct: 299 LRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIKAEYTRRGFSEVKTPTLFS 358

Query: 77  ADLWVESGRYDSYGKEMLRLA----DR------------NDKAMIYGPTHEEVMTDIFRS 120
           A LW  SG ++ Y ++M  L     DR            +   +   P +      +F  
Sbjct: 359 AKLWELSGHWEHYREDMFALQPPGLDRPSSSQSDHSASPHTDTLALKPMNCPAHCLMFAH 418

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP          R E      G+ R R F   DA+ F   P+  +        
Sbjct: 419 RPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEAEIRGCLD 477

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG     M   + P G          A+    Q            P +    
Sbjct: 478 FLHSVYTILGFSF-HMALSTRPSGFLGEPCLWDQAEQVLQQALEEFGAPWDISPGDG--- 533

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  + D+L    +     ++    F    ++     
Sbjct: 534 -----------------AFYGPKIDVHVRDALGRPHQCGTIQLD----FQLPLRF----D 568

Query: 300 ATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +KG  G  +  V +    +G++  +  V+  S  GK   WP  ++PF++ +I +    
Sbjct: 569 LQYKGQLGALERPVLIHRAVLGSVERMLGVLAESCGGK---WPLWLSPFQVVVIPVGTEQ 625

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   +   +    L   G     D D G  +  +   A L  +  Q +VG +  S   V 
Sbjct: 626 E---EYAREAQQSLRAAGLVGDLDADSGLTLSRRIRRAQLAHYNFQFVVGQREQSKRTVN 682

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           I+ R      +  L E +           P
Sbjct: 683 IRTRDNRRLGERDLAEAVQRLLELQDTRVP 712


>gi|83764551|dbj|BAE54695.1| unnamed protein product [Aspergillus oryzae]
          Length = 717

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/468 (17%), Positives = 154/468 (32%), Gaps = 55/468 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 277 KQMQEHLKFLEE----AEKRNHVKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQTLLR 332

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F
Sbjct: 333 SEYRKRGYQEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLF 391

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 392 GHRERSYRELPLRLADFGVLHRNEASGALSGLTRVRKFQQDDTHIF-CTQDQITSEIEGL 450

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ I   + 
Sbjct: 451 FDFLQSIYGLFGFTF-KLKLSTRPEKYLGELETWNYAEEQLKAAMTKFKGDDWTIDEGDG 509

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--- 294
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 510 AFYGPKIDITIA-------------------DALKREFQCATIQLDYQAPINFKLEYMSN 550

Query: 295 -----SLPMSATFKGAD-------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                S   + + +G +       G+   V +    IG+      ++     GK   WP 
Sbjct: 551 EKADKSQAAAESAEGENKSSEPGPGRARPVVIHRAIIGSFERFLGILTEHFGGK---WPF 607

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            ++P +I ++ +        D  E++   L     +V  D  G  +  +     L  +  
Sbjct: 608 WISPRQILIVPVMP---AVNDYVEELQTILRGDKLNVDIDISGNTMQKKIRTGQLAQYNF 664

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIRE----DMSLEEVINYASHRFSNNR 446
             +VG++      V I++R     +     + LEE            R
Sbjct: 665 IFVVGAQEKEARTVNIRNRDDPATQKQGVMIPLEEAREKLRALRKERR 712


>gi|294628375|ref|ZP_06706935.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292831708|gb|EFF90057.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 659

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 140/448 (31%), Gaps = 40/448 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +    +   G+  + P G      +    R     +
Sbjct: 248 QYLDFLAEAEKRDHRKLGAELDLFS-FPDELGPGLAVFHPKGGVVRKVMEDYSRRRHEVS 306

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   ++ P +    L+  SG    Y + M      +++       +  +   IF+S  +S
Sbjct: 307 GYEFVNTPHISKEHLFEISGHLPHYAEGMFPPIQFDEQNYRLKAMNCPMHNLIFKSRGRS 366

Query: 125 YRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP   ++    +R E      G+ RSR F   D++ +  T E      + +    L 
Sbjct: 367 YRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDSHIY-CTKEQMPQELDTLLTFVLD 425

Query: 184 IFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +    GL    +   +         S E    A     Q    ++    P P        
Sbjct: 426 LLRDYGLTEFELELSTRDDSDKFIGSDEDWAEATEALRQAAEKQNLPLVPDPG------- 478

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++  + ++S   ++               +  
Sbjct: 479 -------------GAAYYGPKISVQVRDAIGRSWQMSTIQVDFNQP--------KRFNLE 517

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ADG +   V +     G++     V+   + G    W   +AP +   I +      
Sbjct: 518 YTAADGSRRQPVMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPVQAVGIPVG---DA 571

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EK        G  V  D   +++  +   A     P  +IVG   ++   V  ++
Sbjct: 572 HVGYLEKFALEAKSKGLRVEVDASSDRMQKKIRNAQKQKVPFMIIVGDDDMNAGTVSFRY 631

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R       +  ++ +            V
Sbjct: 632 RDGSQENGIPRDQALAKLVDVVERRAQV 659


>gi|39725443|emb|CAE45679.1| Threonyl-tRNA synthetase [Streptomyces parvulus]
          Length = 675

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 157/442 (35%), Gaps = 37/442 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L      +  +G+  WLP G    D +    R+ + + G 
Sbjct: 254 LAALEEAAKRDHRRIGEELDLFA-FNKEIGRGLPLWLPNGAIIRDELEDWARKTERKLGY 312

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +   DL+  SG    Y +++    D + +     P +      ++++   SYR
Sbjct: 313 KRVVTPHITQEDLYYLSGHLPYYAEDLYAPIDIDGEKYYLKPMNCPHHHMVYKARPHSYR 372

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP+   +    +R E   +  G+MR+R F   DA+ +  T + +K  + ++   +   +
Sbjct: 373 DLPYKVAEYGTVYRFERSGQLHGMMRTRGFSQNDAHIY-CTADQAKDQFLEVMRMHADYY 431

Query: 186 HRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             LG+     + A       D  H+   + +  E     + +  D P             
Sbjct: 432 RTLGISDFYMVLALRDSANKDKYHDDEQMWEDAERITREAMEESDIPFQ----------- 480

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  +     +    S   +++     FG         T+  
Sbjct: 481 ------IDLGGAAHYGPKVDFMIRAVTGKEFAASTNQVDLYTPQRFG--------LTYHD 526

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +DG +   V +    +G+     A +     G   +W   +AP ++ +I I    +   D
Sbjct: 527 SDGTEKPVVVIHRAPLGSHERFTAYLTEHFAGAFPVW---LAPEQVRIIPIV---EELTD 580

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++   L         D    ++ ++   A     PL V+VG +      V ++ R +
Sbjct: 581 YAEEVRDMLLDADVRADVDAGDGRLNAKVRAAVTRKIPLVVVVGRREAEQRTVTVRDR-S 639

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    MSLE+ + + +      
Sbjct: 640 GEETPMSLEKFVAHVTGLIRTK 661


>gi|183981901|ref|YP_001850192.1| prolyl-tRNA synthetase ProS [Mycobacterium marinum M]
 gi|183175227|gb|ACC40337.1| prolyl-tRNA synthetase ProS [Mycobacterium marinum M]
          Length = 582

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 134/223 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I     G+YSWLPLG + L N+  +IREE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVGPGLYSWLPLGLRVLRNIERVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ+K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLTLYQIQIKYRDEARPRAGILRAREFVMKDSYSFDIDSGGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RL ++ + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFDRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRC 226



 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V ARGIE+GHIF  G KY+   +A   G DGK   + MGSYGIG  R+VA + 
Sbjct: 409 PDGAGQLVMARGIEIGHIFQLGRKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVIA 468

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD  G+ WP  +APF + L+ I   D   R     + + L  +G +V  DD     G
Sbjct: 469 EQHHDNLGLRWPAEIAPFGVHLV-IANKDAEARAGAIGLASELDGLGVEVLLDDRQASPG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +F  A+LLG P  V+VG +  +D  VE++ R  G   ++++ +
Sbjct: 528 VKFKDAELLGMPWVVVVG-RGWADGVVELRDRFGGQTRELTVGD 570


>gi|212534744|ref|XP_002147528.1| threonyl-tRNA synthetase, putative [Penicillium marneffei ATCC
           18224]
 gi|210069927|gb|EEA24017.1| threonyl-tRNA synthetase, putative [Penicillium marneffei ATCC
           18224]
          Length = 724

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 154/464 (33%), Gaps = 54/464 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L  L+E    AE  +H+ + +          S G    LP G K  + +  ++R E 
Sbjct: 288 KEHLKFLEE----AEKRNHQKIGKEQELFFFDDVSPGCPFLLPNGTKIFNALQKLLRSEY 343

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F   
Sbjct: 344 RKRGYQEVQTPNMYDVSIWKTSGHWAHYSDDMFKL-DVEKREWALKPMNCPGHFMLFGHR 402

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP       +  R+E      G+ R R+F   D + F  T E        +F  
Sbjct: 403 ERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIF-CTAEQISSEIEGLFDF 461

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G     ++  + P       E    A+    Q        D+ I   +  F 
Sbjct: 462 LKSIYGLFGFTF-KLKLSTRPEKYMGELEAWNYAEDQLRQALNKFMGDDWEINEGDGAFY 520

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY------ 294
                 +I                    D+L    + +   ++      F  +Y      
Sbjct: 521 GPKIDITIA-------------------DALKREFQCATIQLDYQAPINFKLEYITNEKQ 561

Query: 295 -SLPMSATFKGAD-------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            S    A   GA+        +   V +    IG+      ++     GK   WP  ++P
Sbjct: 562 ASADPKANNDGAEKAKETNVNRARPVVIHRAIIGSFERFLGILIEHFAGK---WPFWISP 618

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +I ++ +        D  +++   L     +V  D  G  +  +     L  +    +V
Sbjct: 619 RQILIVPVMP---ALNDYAKELQQILLADKLNVDVDVSGNTLQKKIRTGQLAQYNFIFVV 675

Query: 407 GSKFVSDSKVEIKHRL---TGIRED-MSLEEVINYASHRFSNNR 446
           G++      V I++R    +  + + +SLEE            R
Sbjct: 676 GAQERDSRSVNIRNRDDPASHAKGELISLEEARVKLRALRKERR 719


>gi|317011967|gb|ADU82575.1| threonyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 612

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 154/443 (34%), Gaps = 44/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSAT 301
              I +                             R  + G I        ++ L  +  
Sbjct: 442 DIKITD--------------------------ALRRKWQCGTIQVDMNLPERFKLAFTNE 475

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +  +  V +    +G+     A++     G    +   VAP +I+LI I     V 
Sbjct: 476 ---RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV- 528

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R
Sbjct: 529 --FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDR 586

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
               +  M L+E +N    +   
Sbjct: 587 EKQDQYKMPLKEFLNMVESKMQE 609


>gi|34482934|emb|CAE09933.1| THREONYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 536

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 152/444 (34%), Gaps = 46/444 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L          G+  WLP G +    + A++ E   R  
Sbjct: 131 YLHQMEEAKKRDHRKVGTEMGLFI-FDEDVGAGLPIWLPAGARLRRRLEAMLTEAHIRRN 189

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +DLW  SG Y +Y + M      ++      P +      ++ S ++SY
Sbjct: 190 YEPVRGPEILKSDLWKISGHYQNYKENMY-FTKIDEVEYGIKPMNCVGHIKVYGSGVRSY 248

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  FY+  +  R E      G++R REF   DA+ F   PE  K     +     +I
Sbjct: 249 RELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPEQIKDEVVDIVHFVDKI 307

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
               G     M   + P   IG +   E    A     +    +  +D    +      D
Sbjct: 308 MSAFGFNY-EMEISTRPEKSIGDEAIWEKGTQALKEALEAQGLQYGIDEGGGAFYGPKID 366

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I   ++I                               R  + G +              
Sbjct: 367 IKITDAIG------------------------------RKWQCGTV-QIDMNLPERFELA 395

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +      V +    +G+     A++     G+   +   +AP  ++++ I    + 
Sbjct: 396 YTDENNTPQRPVMIHRAILGSFERFVAILTEHFGGEFPFF---IAPTPVAIVPIG---EE 449

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + +   L KVG      D  E +  +    +    P+ V++G + V++ KV I+ 
Sbjct: 450 QLEYAKHLRLELQKVGVYAEIHDKNETLNKKIRTVEKQRVPMIVVLGEREVNEKKVAIRD 509

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    + ++   E I  A  + S 
Sbjct: 510 RREKRQYELGEAEFIQLAKEKMSE 533


>gi|161507687|ref|YP_001577641.1| prolyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048310|sp|A8YVR3|SYP_LACH4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160348676|gb|ABX27350.1| Prolyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 565

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 139/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +           NE   D 
Sbjct: 335 PVDADWADKIIADETVKDLYNVVVGAGETDYQFENANLDRDFKVDEFVDIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 G+ WP  +APF I ++ +K + +   +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTEHGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ VG K  +D  VE+K        ++S++E+  + +   
Sbjct: 514 KFADADLVGAPIRITVGKK-AADGIVEVKRPTDDKATEISIDELDKFVNQEL 564


>gi|227874914|ref|ZP_03993066.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|269976484|ref|ZP_06183469.1| prolyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|306818238|ref|ZP_07451968.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307701739|ref|ZP_07638753.1| proline--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|227844491|gb|EEJ54648.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|269935285|gb|EEZ91834.1| prolyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|304648977|gb|EFM46272.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307612997|gb|EFN92252.1| proline--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 633

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/246 (40%), Positives = 144/246 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S YF   L+E+P +AE+ SHKL++R G I + + GIY+WLPLG + L N+  ++REE 
Sbjct: 4   RMSSYFARTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLRVLRNIENVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L   + +  + R++ +G  + +L DR     + GPTHEE+ T I +  
Sbjct: 64  DRIGGQELQFPVLLPREPYEATNRWEEFGSSLFKLQDRKGGDYLLGPTHEEMFTVIVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQI+ K+RDE RPR GV+R REF+MKD YSFDLT EG  HSY     +Y
Sbjct: 124 FSSYKDLPILLYQIKEKYRDEARPRAGVIRGREFVMKDLYSFDLTDEGLAHSYALNRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R++ RLGL+    +A+SG +GG  S EF+   D GE     S         +  T   +
Sbjct: 184 RRVYTRLGLEFAICQAQSGAMGGSASEEFLFPCDIGEDTFVRSPGGYAANAEAVTTAVPE 243

Query: 242 IISLNS 247
            +  + 
Sbjct: 244 ALPFDD 249



 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 3/160 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  R+VAA+ E++HD KG++
Sbjct: 434 RGIEIGHIFALGRKYAKALGLTVLDENGKAQVVTMGSYGIGVSRLVAAIAENTHDDKGLV 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP +VAPF++ ++     D     A EK+   L   G  V +DD  +   G +F  A+L+
Sbjct: 494 WPVNVAPFQVHVLA-TGKDPQVFAAAEKLARELEAAGIPVLYDDRAKASAGVKFKDAELM 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P  ++VG K +++  VEI+ R  G   D ++E  +   
Sbjct: 553 GMPYLLVVG-KGLANGTVEIRDRRAGNTLDCTVEAAVEKL 591


>gi|118475741|ref|YP_892822.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414967|gb|ABK83387.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 617

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 151/448 (33%), Gaps = 51/448 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREE 60
           K  + I++E    A+   H+ +               G+  WLP G +    +   +   
Sbjct: 210 KEHIHIIEE----AKKRDHRKLGAEMKFFTFDDTIGVGLPIWLPNGARLRSRLEHKLYRT 265

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G   +  P +  +D W  SG Y +Y + M      +++     P +      +++S
Sbjct: 266 HRLRGYEPVRGPEILKSDAWKISGHYANYKENMY-FTVIDEQEYGIKPMNCVGHIKVYQS 324

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I+SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K +  ++  
Sbjct: 325 EIRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHLFCM-PSQIKENVYEILS 383

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +    G     M   + P           +A          K             +
Sbjct: 384 FVDTLMSAFGFTY-EMEISTKPAKAVGDDAVWEIATKALKDALDEKGLKYGIDEGGGAFY 442

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
              I +                                  R  + G I      ++LP  
Sbjct: 443 GPKIDIKITDA---------------------------LKRKWQCGTI---QVDFNLPAR 472

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   +  +   V +    +G+      ++     G+   W   +AP ++ +I I  
Sbjct: 473 FDLGYIDENNERKQPVMLHRAIMGSFERFIGILLEHTAGELPFW---IAPTQVVIIPISN 529

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++++ L  +  D    +  E +  +   A+    P+ +++G   V++  V
Sbjct: 530 EHHK---YANEVHSLLLDMDVDSEIFNKNETLNKKIRTAEKQRVPMIIVLGDNEVTNRGV 586

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R    ++DMSL+E + +   + + 
Sbjct: 587 ALRDRRAREQKDMSLDEFLGFIQSKLNE 614


>gi|302533417|ref|ZP_07285759.1| threonyl-tRNA synthetase [Streptomyces sp. C]
 gi|302442312|gb|EFL14128.1| threonyl-tRNA synthetase [Streptomyces sp. C]
          Length = 658

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 145/450 (32%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    +   +AE   H+ +     +     +   G+  + P G      +    R 
Sbjct: 241 SKEELKAHLDFLAEAEKRDHRKLGNELDLFSIPDEIGSGLAVFHPRGGIIRRVMEDYSRR 300

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+ +SG  D Y + M               P +  +   IF
Sbjct: 301 RHEEEGYEFVYSPHATKGALFEKSGHLDWYAEGMYPPMQLDGGTDYYLKPMNCPMHNLIF 360

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      ++ 
Sbjct: 361 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMAEELDRT 419

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     QV   +     P P   
Sbjct: 420 LTFVLNLLRDYGLTDFYLELSTKDPEKFVGSDEVWEEATAVLQQVAEKQGLPLTPDPG-- 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    ++  
Sbjct: 478 ------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLPERF-- 513

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + G DG +   V +     G++    AV+   + G     P  +AP +   I I 
Sbjct: 514 --DLEYTGPDGSRQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPIG 568

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  ++  A   K G  V  D   +++  +      L  P  +IVG + ++   
Sbjct: 569 DG---HVEYLQEFAAAAKKQGLRVEVDASSDRMQKKIRNHQKLKVPFMIIVGDEDMAAGT 625

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       +  +E +   +   ++ 
Sbjct: 626 VSFRYRDGSQENGIPKDEALAKLAKVVADR 655


>gi|323466334|gb|ADX70021.1| Proline-tRNA ligase [Lactobacillus helveticus H10]
          Length = 565

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 139/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +           NE   D 
Sbjct: 335 PVNADWADKIIADETVKDLYNVVVGAGETDYQFENANLDRDFKVDEFVDIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 G+ WP  +APF I ++ +K + +   +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTEHGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ VG K  +D  VE+K        +MS++E+  + +   
Sbjct: 514 KFADADLVGAPIRITVGKK-AADGIVEVKRPTDDKATEMSIDELDKFVNQEL 564


>gi|258568114|ref|XP_002584801.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237906247|gb|EEP80648.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 756

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 152/460 (33%), Gaps = 28/460 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  +++  ++R
Sbjct: 305 KSLQGHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNSLQKLLR 360

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    LW  SG ++ Y  +M +LA    +     P +      +F
Sbjct: 361 TEYRKRGYQEVQSPNMYDVGLWRTSGHWNHYKDDMFKLAVEK-REWALKPMNCPGHCIMF 419

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 420 NHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQITQEIEGL 478

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        D+ I   + 
Sbjct: 479 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWNFAEAQLKEALTRFKGSDWEIDEGDG 537

Query: 238 DFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV---GHIFYF 290
            F     DI   +++  ++            +        N+    +  +          
Sbjct: 538 AFYGPKIDITIQDALKREFQCATIQLDYQLPQNFKLEYMTNETGRPKATDAKKDETSPKG 597

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                 P S       G+   V +    IG+      ++     GK   WP  ++P +I 
Sbjct: 598 DDDNPSPDSDDGTPGPGRARPVMIHRAIIGSFERFFGILIEHFGGK---WPFWLSPRQIL 654

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +        D  E++   L     +V  D  G  +  +     L  +    +VG++ 
Sbjct: 655 IVPVMP---AVYDYVEELQGILRGDKLNVDIDVSGNTLQKKIRNGQLAQYNFIFVVGAQE 711

Query: 411 VSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
                V I++R     +     + L+E            R
Sbjct: 712 KETRTVNIRNRDDPSSQAKGSLIPLDEARAKLHALRKERR 751


>gi|313141032|ref|ZP_07803225.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133542|gb|EFR51159.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 596

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/229 (42%), Positives = 141/229 (61%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE +  G
Sbjct: 1   MFLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREEIDGIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + +    SY
Sbjct: 61  AQEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKDMYSSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           ++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +Y RIF
Sbjct: 121 KDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGAYERIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 181 QRLDLKYVPVFAMSGPMGGSASEEFLAPMAIGEDTFALAPSGKAWNVEA 229



 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           ++ I  +        ++     +      A    H +   D          RG+E+G +F
Sbjct: 379 EWIIGGDEAGKHRFHAVYGRDFKADGTVEAVEVRHGDMSPDGSGP--LSFERGVEIGQVF 436

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G KYS  +       +GK   V MG YGIG  RV+A + E+ HD +G+ WP  +AP +
Sbjct: 437 QLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAETHHDERGLAWPAVIAPAQ 496

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
           + ++     D    DA EK+ A L + G +V +DD  +   G +F  A+L+G PL  + G
Sbjct: 497 VHVVA-TGKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGVKFKDAELIGVPLIAVAG 555

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              V++  +EI++R +     + + +     + R 
Sbjct: 556 RDTVNNGTIEIRNRDSSDSVAVPVADAAQTLASRL 590


>gi|154148423|ref|YP_001406459.1| prolyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|166980113|sp|A7I1R8|SYP_CAMHC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|153804432|gb|ABS51439.1| prolyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 569

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 156/282 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK+F P L+E P+DA + SH  ++R G I Q   G+Y++LPLG+  ++ + A+I++E
Sbjct: 1   MKFSKFFAPTLKEAPKDAILPSHVFLIRAGFIEQLGSGLYNFLPLGEMVIEKIKAVIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA++++   +  ++ W ESGRY+ YGKE+LR+ DR +   +  PT+EE    +  +
Sbjct: 61  MDKTGALQVNFSFVTPSEFWQESGRYNVYGKELLRIKDRKENGFVLSPTNEESSVKMIAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 KITSYKQLPIHIYQINTKFRDEARPRFGLLRGREFIMKDGYSFHANMEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A+SG IGG  S EF+VLA  GE  +   +               
Sbjct: 181 YTNIFSRLGLNFRAVEADSGAIGGSGSKEFMVLAQNGEDDILVCESCKYAANIEAAVRVK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 +   +    +   +    + + +    +K  + + +
Sbjct: 241 REAPCAAPETEKMQKFHTPNMKTIDDVANFFKVDKFFTVKAV 282



 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 3/178 (1%)

Query: 264 NEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  D  P+   K    +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG 
Sbjct: 389 QVRAGDCCPKCGAKLDIKKGIEVGHIFQLGQKYSKAMNAIFLDENGKAVPFFMGCYGIGV 448

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++A +IE+ HD KG IW    APFK+ +I   + D+   +   ++Y +    G     
Sbjct: 449 SRLLAVMIEAGHDEKGCIWNTQTAPFKLEIIISNSKDEDASNFAIQLYEKCKNAGISTLL 508

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DD  E+ G +    +L+GFP  V+VG K + D  VE+  R    ++ +S  E+     
Sbjct: 509 DDRKERFGVKMNDFELIGFPFAVLVG-KGLKDGNVELIERKGLNKKIVSSGEIFETLK 565


>gi|157414515|ref|YP_001481771.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047019|sp|A8FK07|SYT_CAMJ8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157385479|gb|ABV51794.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747157|gb|ADN90427.1| Threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315932015|gb|EFV10968.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 602

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 154/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  I+ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHILYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +   A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|297195484|ref|ZP_06912882.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722098|gb|EDY66006.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 657

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 139/450 (30%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    E   +AE   H+ +     +     Q   G+  + P G      +    R+
Sbjct: 240 SKEELKAHLEFLAEAEKRDHRKLGSELDLFSIPEQIGSGLAVFHPKGGIIRRVMEDYSRK 299

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+  SG  D Y   M               P +  +   IF
Sbjct: 300 RHEEEGYEFVYTPHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIF 359

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      +  
Sbjct: 360 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTKEQMADELDST 418

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     QV   +     P P   
Sbjct: 419 LTFVLNLLRDYGLTDFYLELSTKDPEKFVGSDEVWEEATETLRQVAEKQGLPLVPDPG-- 476

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    ++  
Sbjct: 477 ------------------GAAFYGPKISVQAKDAIGRTWQMSTVQLD----FNLPERF-- 512

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + G DG  H  V +     G++    AV+   + G     P  +AP +   I I 
Sbjct: 513 --DLEYTGPDGTKHRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPIG 567

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  +   A   K G  V  D   +++  +      L  P  +IVG   ++   
Sbjct: 568 ---DAHVEYLQDFAADAKKKGLRVEVDSSSDRMQKKIRNQQKLKVPFMIIVGDDDMNAGT 624

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       +  E+ +   +      
Sbjct: 625 VSFRYRDGSQENGIPREDALAKIADVVERR 654


>gi|325678420|ref|ZP_08158040.1| proline--tRNA ligase [Ruminococcus albus 8]
 gi|324109921|gb|EGC04117.1| proline--tRNA ligase [Ruminococcus albus 8]
          Length = 480

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 159/428 (37%), Gaps = 67/428 (15%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           +  +I   S KG     P G    +++  I+       G   + +P      L   E   
Sbjct: 28  KAELIAYTSVKGCMVIRPYGYAIWEHIQRILDTRFKELGHENVCMPMFIPESLLQKEKDH 87

Query: 86  YDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +     ++ +  +   PT E +  + + + + SYR+LP  + Q     R 
Sbjct: 88  VEGFAPEVAWVTHGGSEKLEDRLCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVVRW 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +RSREFL ++ ++   T E +     +M   Y                    
Sbjct: 148 E-KTTRPFLRSREFLWQEGHTIHETAEEAIEETERMLNCY-------------------- 186

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       AD  E ++          +    TD D      +        YA  + 
Sbjct: 187 ------------ADFCEKELAM------PVVKGRKTDSDKFAGAEA-------TYAIEAL 221

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +H+               + ++ G   YFG  ++      F G D K  Y    S+G+  
Sbjct: 222 MHD--------------GKALQAGTSHYFGDGFARAFDIQFTGRDNKLSYPHQTSWGVT- 266

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+I +  D  G++ P +VAP +  ++ I+   +   +  +++  +L   G  V  
Sbjct: 267 TRLIGAIIMTHGDDNGLVLPPAVAPIQAVIVPIQQFKEGVLEKAQEVCEQLKAAGIRVKV 326

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +  G +FA  ++ G P+++ +G K + + +  I  R    +    L E++   + +
Sbjct: 327 DDSEQSPGWKFAEYEMKGVPVRIELGPKDIENGQCVIVTRHDREKTFTPLTELVETVNAK 386

Query: 442 FSNNRPVL 449
               R  +
Sbjct: 387 LEAVREGI 394


>gi|189219987|ref|YP_001940627.1| Threonyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189186845|gb|ACD84030.1| Threonyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 611

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/472 (19%), Positives = 157/472 (33%), Gaps = 75/472 (15%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + Q   RD      +L L   +  +   G+  WLP G      +   + EE  + G   
Sbjct: 180 QLEQAKKRDHRKIGKELELFL-IDERVGAGLPLWLPKGAVIRRELQNFLTEELLQRGYQL 238

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------------------AM 104
           +  P + S DL+  SG Y  Y +         D+                          
Sbjct: 239 VYTPHIGSLDLFRTSGHYPYYRESQFPPILDPDELKAFEDKTGSCAELANRLEKGEVGGY 298

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
           +  P +  +   IF S  +SYR+LP    +    +R E      G+ R R F   DA+ F
Sbjct: 299 LLKPMNCPMHIRIFDSKPRSYRDLPVRIAEFGTVYRFEKSGELSGLTRVRGFTQDDAHIF 358

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG---PIGGDLSHEFIVLADTGETQ 220
             T    +            +  ++GL     R             S E    A+ G  +
Sbjct: 359 -CTESQVEGELMDCLDLVKVVIQKVGLLDTKARLGLRGEEKEKYVGSPESWKKAEEGLRR 417

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                       P                       A      +  + D+          
Sbjct: 418 AAAKSGIDFVEEPG--------------------EAAFYGPKVDFLVKDA---------- 447

Query: 281 GIEVGHIFYFGT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHD 334
              +G  +  GT    Y+LP   S ++ G DG+ H  V +     G++    A++   ++
Sbjct: 448 ---IGRSWQLGTVQLDYNLPARFSLSYVGEDGQLHAPVIIHRAPFGSLERFLAILIEHYE 504

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G   +W   +AP ++ +I +           EKI   L +    V  D   + +G++  V
Sbjct: 505 GHFPLW---LAPEQVRVIPVSDG---LIAYGEKIKEILQQNRFRVSLDRKNDTLGAKIRV 558

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           A L   P  +IVG K    S+V ++    G   +MSL+  I+  +  +   R
Sbjct: 559 AQLQKVPYMLIVGKKEEQMSRVSVRTSKKGNIGEMSLDTFISLITAEYKERR 610


>gi|260101368|ref|ZP_05751605.1| proline-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260084820|gb|EEW68940.1| proline-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|328465729|gb|EGF36933.1| prolyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 565

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 139/225 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNE 225



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 2/232 (0%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V AD  +  +        + +     + D      ++   +           NE   D 
Sbjct: 335 PVNADWADKIIADETVKDLYNVVVGAGETDYQFENANLDRDFKVDEFVDIRTANEGEPDP 394

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +          IEVGHIF  GT Y+  M A F   +GK   V MGSYGIG  R+++A +E
Sbjct: 395 VDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVE 454

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 G+ WP  +APF I ++ +K + +   +  EK+  + S+   DV +DD  E+ G 
Sbjct: 455 QHLTEHGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEKKFSEK-YDVLYDDRKERAGV 513

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA ADL+G P+++ VG K  +D  VE+K  +     +MS++E+  + +   
Sbjct: 514 KFADADLVGAPIRITVGKK-AADGIVEVKRPIDDKATEMSIDELDKFVNQEL 564


>gi|325963430|ref|YP_004241336.1| Ser-tRNA hydrolase; threonyl-tRNA synthetase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469517|gb|ADX73202.1| Ser-tRNA hydrolase; threonyl-tRNA synthetase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 669

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/464 (17%), Positives = 140/464 (30%), Gaps = 60/464 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L   QE   +AE   H+ +     +     +   G+  + P G      +    R+
Sbjct: 242 TKDALKAYQERIAEAERRDHRKLGSELDLFSFPDELGSGLPVFHPKGGIIRKEMEDYSRQ 301

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYG 107
                G   +  P +    L+  SG  D Y   M      +             +     
Sbjct: 302 RHVEAGYEFVYTPHITKGHLYEVSGHLDWYRDGMFPAMHVDAELNEDGTVRKPGQDYYLK 361

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +  +   IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +  T
Sbjct: 362 PMNCPMHNLIFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CT 420

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVF 222
            E  K    K     L +    GL    +   +      +G D + E    A     +V 
Sbjct: 421 REQMKDELTKTLNFVLGLLKDYGLNDFYLELSTKDPEKYVGEDAAWE---EATRTLAEVA 477

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                   P P                       A      + +  D+L    ++S   +
Sbjct: 478 QESGLELVPDPG--------------------GAAFYGPKISVQAKDALGRTWQMSTIQL 517

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++ L   A    ADG     V +     G++     V+   + G    W 
Sbjct: 518 D----FNLPERFELEFQA----ADGTRQRPVMIHRALFGSIERFMGVLTEHYAGAFPAW- 568

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++  I +    +   +    +  +L   G     D   ++   +   A     P
Sbjct: 569 --LAPVQVVGIPVA---ETFNEYMFDVVDQLKAAGIRAEVDTSSDRFPKKIRTASKDKIP 623

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +I G        V  + R       + + E +   +    N 
Sbjct: 624 FVLIAGGDDAEAGAVSFRFRDGSQDNGVPVAEAVKRITEAVRNR 667


>gi|328881181|emb|CCA54420.1| Threonyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 640

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 145/450 (32%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    +   +AE   H+ +     +     +   G+  + P G      +    R+
Sbjct: 223 SKDELKAHLDFLAEAEKRDHRKLGNELDLFSIPDEIGSGLAVFHPKGGIIRRVMEDYSRK 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+ +SG  D Y + M               P +  +   IF
Sbjct: 283 RHEEEGYEFVYSPHATKGKLFEKSGHLDWYAEGMYPPMQLDEGVDYYLKPMNCPMHNLIF 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      +K 
Sbjct: 343 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTKEQMAEELDKT 401

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     QV   +     P P   
Sbjct: 402 LTFVLNLLRDYGLTDFYLELSTKDPEKFVGSDEIWEEATAVLQQVAEKQGLPLTPDPG-- 459

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    ++  
Sbjct: 460 ------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLPERF-- 495

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG K   V +     G++    AV+   + G     P  +AP + + I I 
Sbjct: 496 --DLEYTAPDGTKQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQATGIPIG 550

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +  A+  K G  V  D   +++  +   A     P  +I G + ++   
Sbjct: 551 ---DAHVDYLHEFAAKAKKQGLRVDVDSSSDRMQKKIRNAQKQKVPFMIIAGDEDMAAGA 607

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       + ++E I   +    + 
Sbjct: 608 VSFRYRDGSQENGIPVDEAIAKIAKIVEDR 637


>gi|237751610|ref|ZP_04582090.1| prolyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229372976|gb|EEO23367.1| prolyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 575

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/230 (47%), Positives = 147/230 (63%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F P L+E P+DA + SH  +LR G IHQ   GIY++LPL Q  +D +  I+REE
Sbjct: 1   MRFSTFFAPTLKEAPKDAVLKSHIYLLRAGYIHQIGSGIYNFLPLAQIVMDKIKTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+++  L    LW +SGRY+ Y  E+    D+   + + GPTHEE +T+I ++
Sbjct: 61  MNRAGANEITMGFLTPTSLWEQSGRYEKYS-ELALFTDKKGASFVLGPTHEECVTEIAKT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP   YQI LKFRDELRPRFG++R+REF+MKDAYSF  + E     +  M  +
Sbjct: 120 YIKSYKQLPLNLYQIHLKFRDELRPRFGLLRAREFVMKDAYSFHDSLESLNKEFINMRDT 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y+RIF RLGL    + A+SG IGG  S EF+VLA+ GE  +         
Sbjct: 180 YVRIFSRLGLDFRIVEADSGAIGGSGSREFMVLAECGEDTIVTCAKCDYA 229



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 15/229 (6%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F    + GE  +  + +     +  +  +FDD+   + +  Q     A            
Sbjct: 358 FDKELENGEDLICGANEHGYHYVGVQLEEFDDLYYRDLVAVQEGDSCAKCGGT------- 410

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ++GIEVGHIF    KYS PM A F  ++G      MG YG+G  R+++A++
Sbjct: 411 ------LRYSKGIEVGHIFKLEDKYSKPMQANFLLSNGSSMPFTMGCYGLGVSRLISAIL 464

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E   D KG +W  +VAPFK+ +I     ++        +Y +L + G +V  DD  E+ G
Sbjct: 465 EQKADEKGCVWG-AVAPFKLDIIISNMKNEEEVLFATNLYTQLQEKGIEVILDDRNERFG 523

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           S+ A  +L+GF   +IVG + ++++K+E+  R   IR + S   ++   
Sbjct: 524 SKIADFELIGFEYALIVGKR-LAENKLELIKRDGLIRTEYSSANILESL 571


>gi|217034632|ref|ZP_03440039.1| hypothetical protein HP9810_881g25 [Helicobacter pylori 98-10]
 gi|216942927|gb|EEC22414.1| hypothetical protein HP9810_881g25 [Helicobacter pylori 98-10]
          Length = 612

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 158/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A +   +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATSALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I++R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRNREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|258593203|emb|CBE69542.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) [NC10
           bacterium 'Dutch sediment']
          Length = 572

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/227 (44%), Positives = 148/227 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+E P +AE  SHKLM+R G++ Q + GIY  LPLGQ+ +D ++AIIREE
Sbjct: 1   MRWTRSLIPTLKEEPAEAEAISHKLMVRAGLVRQLAAGIYITLPLGQRVMDKISAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR    E+++P L  A+LW ++GR+ + G+EM RL DR  + M  G THEEV+  +   
Sbjct: 61  MNRIDGQEITMPVLHPAELWQQTGRWATIGEEMFRLYDRGKRQMCLGMTHEEVVAWLAAR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR+LP T+YQIQ K RDE RP+ GV+R+REF+MKD+YS D    G + SY     +
Sbjct: 121 EIRSYRDLPQTWYQIQTKLRDEARPKSGVLRTREFVMKDSYSLDRDDAGLEKSYELHKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R GL    + ++ G +GG ++HEF+  ++ GE ++      
Sbjct: 181 YCRIFTRCGLSFHAVESDPGMMGGAVAHEFMAPSEAGEDEIALCDRC 227



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/192 (34%), Positives = 107/192 (55%), Gaps = 2/192 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                 +D+H     D  P  +      R IE+G+IF  GTKYS+PM A +    G+++ 
Sbjct: 368 HFQPRWADIHQVSNGDRCPHCEGSLRIERVIEIGNIFRLGTKYSIPMKAVYLSEAGEEYP 427

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MGSYGIG  R+ AA +E  HD  GIIWP ++APF++ L+ +   DQ   +  E +Y++
Sbjct: 428 IVMGSYGIGLARIAAAAVEQHHDDLGIIWPSAIAPFQLHLLPVNMRDQKMAELAEALYSQ 487

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G +  +DD  E+ G +F  ADLLG P+++ +G++ + +  V++K R T     + L
Sbjct: 488 LQQAGIETLYDDRDERAGVKFKDADLLGLPMRMTIGTRTLKEGMVDLKIRKTAKEVQIPL 547

Query: 432 EEVINYASHRFS 443
            E ++      S
Sbjct: 548 SEAVSTVHSLLS 559


>gi|56789234|gb|AAH88355.1| TARS protein [Homo sapiens]
          Length = 682

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 140/409 (34%), Gaps = 43/409 (10%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  +K+  +          D D G  +  +   A L  +   ++VG K
Sbjct: 631 DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEK 679


>gi|167589762|ref|ZP_02382150.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ubonensis
           Bu]
          Length = 406

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 146/430 (33%), Gaps = 45/430 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L        S G   W P G      V   IRE   + G  E+  P + S
Sbjct: 5   DHRVLGNKLDLFHQ--QDESPGAVFWHPRGMALYRVVEEYIRERMRQAGFAEVRTPQIAS 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW +SG ++ +G+ M  L D + +     P        +F+   +SYR+LP  + +  
Sbjct: 63  RALWEQSGHWEKFGRNMFSL-DSDGQPFCLKPMSCPCHVQVFKRGSRSYRDLPVRYSEFG 121

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+MR+R F   DA+   +  +  +    +       I+   G     +
Sbjct: 122 AVHRAEPSGSLHGLMRARAFTQDDAHVLCM-EDQVEAEVARFCRLLKTIYADFGFDRFDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P            +++       S          E   +   +  + +  Q    
Sbjct: 181 ALSTRPSVRAGDDALWDRSESMLALAARSAGLHFEIQQGEGAFYGPKLEFHLLDRQ---- 236

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYV 312
                                   R  + G I      + LP  + AT+    G K   V
Sbjct: 237 -----------------------GRKWQCGTI---QLDFVLPERLGATYVSESGAKATPV 270

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++     ++   H+G    W   +AP +I + NI       R   +      
Sbjct: 271 MLHHAVLGSLERFIGILLEHHEGWLPTW---LAPDQIVVANIG---DEARPFADSAALAF 324

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +GC V  D   E++  +   A  L  P+  + G K      V ++ R  G R  +S+ 
Sbjct: 325 ETIGCRVLRDFRPERLPRKIFDARELAAPIFAVAGPKEAQSGAVSLRLR-NGERHALSIG 383

Query: 433 EVINYASHRF 442
           + + Y   R 
Sbjct: 384 DALAYLEKRV 393


>gi|291277001|ref|YP_003516773.1| threonyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964195|emb|CBG40041.1| threonyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 603

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 150/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      ++ L T    +   G+  WLP G +    +  ++ +      
Sbjct: 198 YLHQIEEAKKRDHRKLGVEMGLFT-FDEEVGAGLPIWLPNGARLRRRIEELLTKALMIRD 256

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  + +W  SG +D+YG+ M      ++      P +      +++S ++SY
Sbjct: 257 YEPVRGPELLKSSVWKTSGHFDNYGENMY-FTTIDEVEYGLKPMNCVGHIKVYQSSVRSY 315

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  FY+  +  R E      G++R REF   DA+ F   P   K   + +     +I
Sbjct: 316 RELPLRFYEYGIVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPTQIKTEVSNIIAFTDKI 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     M   + P           +A                              
Sbjct: 375 MQAFGF-CYEMELATRPQKSIGQDAVWEVATQALIDALQENHIHYKIDEGGG-------- 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D++    +     I++        +++L     +  
Sbjct: 426 ------------AFYGPKIDIKITDAIGRKWQCGTIQIDM----NLPERFAL----EYID 465

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+    +A++     G+   +   +AP ++ LI I    +    
Sbjct: 466 ENNTAQQPVMIHRAILGSFERFSAILTEHFGGEFPFF---IAPVQVVLIPIT---ESQHQ 519

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  ++  +G      +  E +  +   A+    P+ +++G K  +   + I+ R  
Sbjct: 520 YAQSLRKKIIALGAYAEVMNKNETLNKKIRNAEKQHVPMILVIGQKEQNSGTLAIRDRRE 579

Query: 424 GIREDMSLEEVINYASHRFSN 444
             + +M  EE ++    +   
Sbjct: 580 KSQYEMKEEEFLHMVEQKMKE 600


>gi|237750837|ref|ZP_04581317.1| threonyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229373282|gb|EEO23673.1| threonyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 612

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 156/448 (34%), Gaps = 52/448 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L T        G+  WLP G +    +  ++       
Sbjct: 200 QYLFQLEEAKKRDHRKLGVEMELFT-FEEDVGAGLPIWLPKGARLRRRIEELLTRALILN 258

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
               +  P +  +D+W  SG Y  Y + M      ++      P +      ++++ I+S
Sbjct: 259 EYEPVRCPEILKSDVWKISGHYTHYKENMY-FTTIDEVEYGIKPMNCVGHIKVYQNSIRS 317

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  FY+  +  R E      G++R REF   DA+ F   PE  ++  N +     +
Sbjct: 318 YRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPEQIENEVNNILRFTHK 376

Query: 184 IFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           I +  G     M   + P   IG D   E   LA             +D    +      
Sbjct: 377 IMNAFGFSY-EMELSTRPEQSIGEDSVWESATLALQNALAGNNISYQVDEGGGAFYGPKI 435

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DI   ++I                               R  + G I           + 
Sbjct: 436 DIKITDAI------------------------------GRKWQCGTI-QIDMNLPERFNL 464

Query: 301 TFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++   + +    V +    +G+     A++     G+   +   +AP ++ +I I    +
Sbjct: 465 SYIDENNEHAMPVMIHRAILGSFERFVAILTEHFGGEFPFF---IAPTQVIIIPIN---E 518

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + +   L   G         E +  +   A+    P+  ++G K ++++ V I+
Sbjct: 519 SHVSMAQNLQNELRLRGIYAELSLKNESLNKKIRTAEKQKVPMIALIGDKELNNNSVSIR 578

Query: 420 HR----LTGI--REDMSLEEVINYASHR 441
            R     +G   + +MS++E +   S+ 
Sbjct: 579 DRRMKMDSGENMQYEMSMQEFLEKTSNL 606


>gi|50543472|ref|XP_499902.1| YALI0A09427p [Yarrowia lipolytica]
 gi|49645767|emb|CAG83829.1| YALI0A09427p [Yarrowia lipolytica]
          Length = 461

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 153/434 (35%), Gaps = 50/434 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   S G   +LP GQ+    +   +R +    G  E+S P +    LW +SG ++ +  
Sbjct: 59  ISPESPGSAFFLPHGQRIYSRLGEFMRLQLRVFGFQEISSPIMYKNSLWKQSGHWEKFQD 118

Query: 92  EMLRLADRN-----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +M R+   +     ++     P +      +F S  +SYR LP  +       R+E    
Sbjct: 119 DMFRVQPGHEETSVEEEFSLKPMNCPGHCLLFNSLKRSYRELPLRYSDFSPLHRNEASGA 178

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F   D + F  TPE  +   ++      + ++  GL+   +   + P    
Sbjct: 179 LSGLTRVRRFHQDDGHIF-CTPEQVESEISRALKLVQQTYNTFGLEISRVVLSTRPETFI 237

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E    A+   T V  S                         E      A      + 
Sbjct: 238 GDIEQWNDAEKALTSVLDSWSV-----------------SKGKWELNAGDGAFYGPKIDI 280

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D   +  + +   ++      F  KY       F  ++     V +     G++   
Sbjct: 281 LVKDKHGKEHQTATTQLDFQLPERFQLKY-------FDASETAQRPVMVHRAVYGSLERF 333

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------------L 372
            A++   ++GK   WP  ++P +  ++ +    +   +  EK+ A+             L
Sbjct: 334 LAILIDHYEGK---WPLWLSPRQCMVLPVG---EAQNEFAEKVAAQLSGLPSITDQSTPL 387

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           S        D   E +G +   A   G+    ++G K + + KV ++      R+ ++++
Sbjct: 388 SASTLFCDVDTRSETLGQKIKQARNEGYSYIAVIGDKEMQEGKVTVQKPGKKDRQLLTVD 447

Query: 433 EVINYASHRFSNNR 446
           E  ++     +  R
Sbjct: 448 EARDFFHKEQNAFR 461


>gi|311894878|dbj|BAJ27286.1| putative threonyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 659

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 142/446 (31%), Gaps = 41/446 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD     ++L L + +  Q   G+  + P G      +    R+    
Sbjct: 247 KAHLDFLEEAAKRDHRKLGNELDLFS-IPEQIGSGLAVFHPKGGIIRRTMEDYSRKRHEE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P      L+  SG  D Y   M               P +  +   IF +  
Sbjct: 306 EGYEFVYTPHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARG 365

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      ++     
Sbjct: 366 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMADELDRTLTFV 424

Query: 182 LRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           L +    GL    +   +  P     S +    A      V   +     P P       
Sbjct: 425 LDLLRDYGLNDFYLELSTKDPEKFVGSDDAWEEATAVLASVAEKQGLPLVPDPG------ 478

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +  D++    ++S   ++    F    ++      
Sbjct: 479 --------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNLPERF----DL 516

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ADG +   V +     G++    AV+   + G     P  +AP  ++ I I     
Sbjct: 517 EYTSADGSRQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVTVTGIPIT---D 570

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   + A L K G  V  D   +++  +   A     P  +I G+  V    V  +
Sbjct: 571 EHVPYLLDVAAELKKHGIRVEVDTSDDRMQKKIRNAQKTKVPFMLIAGNDDVEAGAVSFR 630

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           +R    +  +  +E I        + 
Sbjct: 631 YRSGEQKNGVPKDEAIAEIVEAVRSR 656


>gi|71892071|ref|YP_277801.1| prolyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|114152172|sp|Q493B4|SYP_BLOPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71796177|gb|AAZ40928.1| prolyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 581

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/222 (45%), Positives = 149/222 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P++ +  SH+LMLR G+I Q S G+Y+WLP G + L  +  IIREE
Sbjct: 1   MRTSQYLLATLKEAPKNCKAISHQLMLRAGLIRQVSSGLYTWLPTGLRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIE+++P +Q A LW +SGR+  YG E+LR  +RN++  + GPTHEE++++I   
Sbjct: 61  MSKIGAIEIAMPIVQPARLWKKSGRWTGYGTELLRFKNRNNQEFVLGPTHEEMVSEIICK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
               Y+  P   YQI  K+RDE RPR GV+R+REF+MKD YSF +  +  +++YN M+ +
Sbjct: 121 ETMLYKQFPLIVYQIHTKYRDEARPRSGVIRAREFIMKDGYSFHINQKSLQNTYNNMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y  IF+R+GL    ++AE G IGG LSHEF   ++ GE  + 
Sbjct: 181 YHTIFNRIGLNFCVVQAEPGKIGGALSHEFQAYSENGEDSIA 222



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 8/202 (3%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +       ++  +D+H     +S    K        IE+GHIF  G KY L +   +   
Sbjct: 378 VNWNRDILFSKVADLHEVLHHNSYTNKKNILSIHNCIEIGHIFQLGQKY-LNLHTNYSQK 436

Query: 306 DGKDHY---VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-C 361
           + +  +   ++MG YGIG  R++A +IE ++D  GI+WPD +APFK+++I I  +  V  
Sbjct: 437 NNEHKHNLSMEMGCYGIGITRIIAVIIEQNYDKNGILWPDVIAPFKLAIIPIDMYRSVNV 496

Query: 362 RDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           R+  EKIY +L  V G D+  DD  E  G+ FA  DL+G P  +I+  + +++ +VE K+
Sbjct: 497 RNIAEKIYTQLLSVIGIDILIDDRKEYPGTMFADIDLIGIPHILIISDRSLANQEVEYKY 556

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R     E + LE +I Y   + 
Sbjct: 557 RKKNKIEKIKLEMLIRYLIEKI 578


>gi|148706886|gb|EDL38833.1| threonyl-tRNA synthetase-like 1 [Mus musculus]
          Length = 630

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 148/463 (31%), Gaps = 58/463 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +     AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 198 LLRNWEARREAAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 257

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN----------------DKAMIYG 107
            G  E+  PTL S  LW +SG ++ Y  +M  L                       +   
Sbjct: 258 RGFSEVKTPTLFSTKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALK 317

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R   F   DA+ F   
Sbjct: 318 PMNCPAHCLMFAHRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA- 376

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P   +            ++  LG     +   + P G          A+    Q      
Sbjct: 377 PHQLEAEIQGCLDFLRCVYSVLGFSF-HLALSTRPPGFLGEPRLWDQAEQVLQQALEKFG 435

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                 P +                     A      +  L D+L    +     ++   
Sbjct: 436 EPWDLNPGDG--------------------AFYGPKIDVHLHDALGRPHQCGTIQLD--- 472

Query: 287 IFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G     V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 473 -FQLPLRF----DLQYKGPAGTPECPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 524

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           P ++ +I ++   +   +   ++   L   G     D D G  +  +   A L  +  Q 
Sbjct: 525 PLQVVVIPVRTEQE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQF 581

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +VG +  S   V ++ R      +  L E +       +   P
Sbjct: 582 VVGQREQSQRTVNVRTRDNRQLGERDLAESVQRLLELQNARVP 624


>gi|297379344|gb|ADI34231.1| threonyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 612

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +  +  
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEY-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +   A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEVGTEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|308183917|ref|YP_003928050.1| threonyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308059837|gb|ADO01733.1| threonyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 612

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ +    + I+ R   
Sbjct: 530 ALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 TQYKMPLKEFLNMVESKMQE 609


>gi|57242133|ref|ZP_00370073.1| prolyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57017325|gb|EAL54106.1| prolyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 568

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/231 (42%), Positives = 138/231 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+++ P  +E P+DA + SH  + R G I Q+  G+Y++LPLG+     +  II+EE
Sbjct: 1   MKFSQFYAPTFKEAPKDATLPSHIFLTRAGFIEQNGSGLYNFLPLGKMVYSKIENIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E S+     A  W ESGRY+ +GKE+LR  DR +   + GPTHEE M ++ ++
Sbjct: 61  MDKAGALETSLSFTTPASFWQESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLNVVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF    E     +  M  +
Sbjct: 121 KITSYKQLPLNLYQIGLKFRDEARPRFGLLRCREFVMKDAYSFHKDEEDLTREFENMQGT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +I  RL L    + A+SG IGG  S EF+VLA  GE  +          
Sbjct: 181 YSKILKRLELDFRIVEADSGAIGGSGSKEFMVLAQNGEDDILLCSHCDYAA 231



 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 1/223 (0%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             +   +  D        +  D   +   V               E    +    K   +
Sbjct: 346 DFYIDNELKDEKQMIMGANEIDYHFVGIDVVNLNEERFKDLVEVKEGDCCAKCGAKLTKS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GTKYS  M ATF   +GK     MG YG+G  R+VA  +E+S D +GI+
Sbjct: 406 KGIEVGHIFKLGTKYSAAMQATFLDENGKAKPFVMGCYGMGVSRLVAVAVEASFDERGIV 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W ++++PFK+ +I     D+   +    +Y  L K+G +V  DD  E+ G +    +L+G
Sbjct: 466 WQEALSPFKLVIILSNIKDEKALNLGISLYEDLRKLGINVLLDDRNERYGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F   +I+G K + ++++E+  R    +  +  +  +       
Sbjct: 526 FNYALIIG-KSLENNELELVKRKDLSKIKLKADTALIELKKVL 567


>gi|46190981|ref|ZP_00120791.2| COG0442: Prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|317482435|ref|ZP_07941452.1| prolyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916095|gb|EFV37500.1| prolyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 594

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/229 (42%), Positives = 140/229 (61%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE N  G
Sbjct: 1   MFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEINGIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +    SY
Sbjct: 61  AQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMYSSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           ++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y RIF
Sbjct: 121 KDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAYERIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            RL LK +P+ A SGP+GG  S EF+     GE     +     + + +
Sbjct: 181 QRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEA 229



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+ HD  G+ 
Sbjct: 428 RGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLA 487

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP  + ++     D V  +  EK+ A L   G +V +DD  +   G +F  A+L+
Sbjct: 488 WPSVIAPAAVHVVA-TGKDAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELI 546

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           G PL  +VG  +V+D  +E++ R    +
Sbjct: 547 GVPLVAVVGRDYVNDGTIELRDRNGENK 574


>gi|157736649|ref|YP_001489332.1| prolyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|166980098|sp|A8ERT9|SYP_ARCB4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157698503|gb|ABV66663.1| prolyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 568

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/229 (42%), Positives = 138/229 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P  +E P DA + SH+ ++R G I Q   GIY ++PLG+  L+ + AI++EE
Sbjct: 1   MKFSKMFIPTTKETPNDATLPSHQYLVRGGFIAQTGAGIYDFMPLGKIVLEKIRAIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+    +    LW ESGR  + G EMLR  DR +   +  PT+EE + ++ ++
Sbjct: 61  MDEAGANEVQFGFVTPLTLWQESGRATTMGAEMLRFKDRKNGEFVLSPTNEEAVVNMVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQI  KFRDE RPRFG+MR REFLMKD YSF  + E     +N M  +
Sbjct: 121 RITSYKDLPLHLYQINTKFRDEARPRFGLMRGREFLMKDGYSFHSSEEDLVREFNLMETT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y +I+ +LGL    + A+SG IGG  S EF V+AD+GE  +        
Sbjct: 181 YKKIYTKLGLDFRVVAADSGAIGGSGSKEFHVIADSGEDTLVVCDSCDY 229



 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 103/211 (48%), Gaps = 2/211 (0%)

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +   + +D   +N+ +               E    +    K    +GIE GHIF  GTK
Sbjct: 359 ACGANEEDYHLVNTDLSTLKDVKYYDLIAVQEGDICACCGGKLSYTKGIEAGHIFQLGTK 418

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  M+A F   +GK     MG YGIG  R+VAAVIE +HD KG IW  + APF + +I 
Sbjct: 419 YSSAMNANFLDENGKAKPFIMGCYGIGVSRLVAAVIEQNHDDKGCIWTKATAPFMVDIIV 478

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +  +      E++Y++L + G     DD    + G + +  +LLGFP  V++G K + 
Sbjct: 479 SNSKKEEEAKVGEELYSKLKQAGISTILDDRINARFGFKMSDFELLGFPYAVVIGKK-LE 537

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D  VEI  R T  + D+ ++EVI+       
Sbjct: 538 DGLVEIVDRKTLEKIDVKVDEVISKILELVK 568


>gi|21672515|ref|NP_660582.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009415|sp|Q8K9S2|SYP_BUCAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21623136|gb|AAM67793.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 571

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/226 (45%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P  A+I SH+LML++GMI + S GIY WLP G + L+ +  II+ E
Sbjct: 1   MRASKYLFSTLKETPHHAKIISHQLMLKSGMIRKLSSGIYIWLPTGIRVLNKIKDIIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW  SGR   YG+E+ +  DR ++  I GPT+EEV+T+  R+
Sbjct: 61  MRKINALEVLMPVVQPKKLWENSGRLSIYGEELFQFYDRRNQKFILGPTNEEVVTNFIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S++ LP   YQIQ KFRDE+RPRFG++RSREF+MKDAYSF +     + +YN  + S
Sbjct: 121 EINSFKELPLIIYQIQTKFRDEIRPRFGIVRSREFIMKDAYSFHINKHCLEKTYNDFYQS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y+ IF+++ ++   + A+SG +GG +SHEF  L++ GE ++  SK+
Sbjct: 181 YINIFNKIKIQFRAVNADSGSMGGSISHEFQALSENGEDEIVFSKN 226



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 1/175 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S         + IE+GHIF  G +YS  M+   +       ++ MG YGIG  R+VA+VI
Sbjct: 395 SDGSKSLEIKKSIEIGHIFQLGKEYSKKMNVLVQEQHNNYKHIHMGCYGIGITRIVASVI 454

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E ++D  GIIWPDS+APF++ ++ +   +    ++  E +Y  L K   DV   D  E+ 
Sbjct: 455 EQNYDDNGIIWPDSIAPFQVVILPLNTKNCIKIKEITENLYKILKKEKIDVILYDRNERP 514

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  F   DL+G P Q+I+  + ++++KVE + R       + ++E+  +   + +
Sbjct: 515 GIMFNQIDLIGIPHQIIISPRHINENKVEYRERKNNKSTLIKVKEITYFLKKKLN 569


>gi|49168658|emb|CAE02700.1| putative threonyl tRNA synthase [Yarrowia lipolytica]
          Length = 461

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 153/434 (35%), Gaps = 50/434 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   S G   +LP GQ+    +   +R +    G  E+S P +    LW +SG ++ +  
Sbjct: 59  ISPESPGSAFFLPHGQRIYSRLGEFMRLQLRVFGFQEISSPIMYKNSLWKQSGHWEKFQD 118

Query: 92  EMLRLADRN-----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +M R+   +     ++     P +      +F S  +SYR LP  +       R+E    
Sbjct: 119 DMFRVQPGHEETSVEEEFSLKPMNCPGHCLLFNSLKRSYRELPLRYSDFSPLHRNEASGA 178

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F   D + F  TPE  +   ++      + ++  GL+   +   + P    
Sbjct: 179 LIGLTRVRRFHQDDGHIF-CTPEQVESEISRALKLVQQTYNTFGLEISRVVLSTRPETFI 237

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E    A+   T V  S                         E      A      + 
Sbjct: 238 GDIEQWNDAEKALTSVLDSWSV-----------------SKGKWELNAGDGAFYGPKIDI 280

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D   +  + +   ++      F  KY       F  ++     V +     G++   
Sbjct: 281 LVKDKHGKEHQTATTQLDFQLPERFQLKY-------FDASETAQRPVMVHRAVYGSLERF 333

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------------L 372
            A++   ++GK   WP  ++P +  ++ +    +   +  EK+ A+             L
Sbjct: 334 LAILIDHYEGK---WPLWLSPRQCMVLPVG---EAQNEFAEKVAAQLSGLPSITDQSTPL 387

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           S        D   E +G +   A   G+    ++G K + + KV ++      R+ ++++
Sbjct: 388 SASTLFCDVDTRSETLGQKIKQARNEGYSYIAVIGDKEMQEGKVTVQKPGKKDRQLLTVD 447

Query: 433 EVINYASHRFSNNR 446
           E  ++     +  R
Sbjct: 448 EARDFFHKEQNAFR 461


>gi|84496326|ref|ZP_00995180.1| threonyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84383094|gb|EAP98975.1| threonyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 661

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 148/451 (32%), Gaps = 35/451 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L    E   +AE   H+ +     +     +   G+  + P G      +   +R 
Sbjct: 240 TKEELRAHLERLAEAEKRDHRKLGAELDLFSFPDELGSGLPVFHPKGGVIKREMEDYVRR 299

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G   +  P +    L+  SG    Y   M    +           +  +   IF 
Sbjct: 300 RHIEEGFDYVGTPHISKDGLFHTSGHLPYYADTMFPPMEFEGSKYQLKAMNCPMHNLIFS 359

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP  F++    +R E      G+ R R     D++S+ +T E +      + 
Sbjct: 360 SRGRSYRELPLRFFEFGSVYRYEKSGVVHGLTRVRGMTQDDSHSY-VTAEQAPAEIKHLL 418

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL+   +   +    G+ S +FI   +  E      +             
Sbjct: 419 DFVLSLLRDFGLEDFYLELSTRDTEGEKSAKFIGSDEQWEVATSVLEKV----------- 467

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                     +       A      + +  D++    ++S    +      FG +Y    
Sbjct: 468 ---ATDSGLELVADPGGAAFYGPKISVQARDAIGRTWQMSTIQYDFNQPERFGLEY---- 520

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               + +DG +   V + S   G++     V+   + G   +W   ++P ++  + +   
Sbjct: 521 ----QASDGSRQQPVMIHSAKFGSIERFFGVLVEHYAGAFPVW---LSPVQVLGLPVA-- 571

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    + +++   G  V  DD  ++   +   A     P  +I G    S++ V 
Sbjct: 572 -DEYNDYLWDVLSQMKAKGIRVELDDSDDRFPKKIRNASKAKVPFALIAGEDDRSNNAVS 630

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++R    +  + +E+ I            V
Sbjct: 631 FRYRDGSQKNGVPIEDAIAEVLTAIETRAQV 661


>gi|12847728|dbj|BAB27683.1| unnamed protein product [Mus musculus]
          Length = 723

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 148/463 (31%), Gaps = 58/463 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +     AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 291 LLRNWEARREAAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 350

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN----------------DKAMIYG 107
            G  E+  PTL S  LW +SG ++ Y  +M  L                       +   
Sbjct: 351 RGFSEVKTPTLFSTKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALK 410

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R   F   DA+ F   
Sbjct: 411 PMNCPAHCLMFAHRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA- 469

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P   +            ++  LG     +   + P G          A+    Q      
Sbjct: 470 PHQLEAEIQGCLDFLRCVYSVLGFSF-HLALSTRPPGFLGEPRLWDQAEQVLQQALEKFG 528

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                 P +                     A      +  L D+L    +     ++   
Sbjct: 529 EPWDLNPGDG--------------------AFYGPKIDVHLHDALGRPHQCGTIQLD--- 565

Query: 287 IFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G     V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 566 -FQLPLRF----DLQYKGPAGTPECPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 617

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           P ++ +I ++   +   +   ++   L   G     D D G  +  +   A L  +  Q 
Sbjct: 618 PLQVVVIPVRTEQE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQF 674

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +VG +  S   V ++ R      +  L E +       +   P
Sbjct: 675 VVGQREQSQRTVNVRTRDNRQLGERDLAESVQRLLELQNARVP 717


>gi|312871363|ref|ZP_07731459.1| proline--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872484|ref|ZP_07732553.1| proline--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312873339|ref|ZP_07733392.1| proline--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311091129|gb|EFQ49520.1| proline--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311092066|gb|EFQ50441.1| proline--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311093115|gb|EFQ51463.1| proline--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
          Length = 566

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPASIGEDVIATNE 225



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 4/219 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +  + +  +D+  I +  +I   +     A     N    D +          IEV
Sbjct: 352 KGLYNVVVGANESDYQYINA--NIDRDFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEV 409

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E       I WP  V
Sbjct: 410 GHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNSIFWPKEV 469

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APF+I +I +   +       +K+    S    DV +DD  E+ G +F  ADL+G P+++
Sbjct: 470 APFEIHIIQMNMKNDEQTVVSKKLEEIFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRI 528

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IVG + VS+  VE+K        +MSL+ +  Y S    
Sbjct: 529 IVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKELR 566


>gi|307720827|ref|YP_003891967.1| prolyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306978920|gb|ADN08955.1| prolyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 568

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/229 (44%), Positives = 143/229 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRSK F+P  +E P DA + SH  + R G I Q + G+Y++LPL ++ +  +  II EE
Sbjct: 1   MRRSKAFIPTTKEAPSDATLPSHIFLSRAGFITQVAAGLYNYLPLAKRVIKKIENIINEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +  +  A+LW ESGR + +GKE+LR  DR +   + GPTHEE+M D+ R+
Sbjct: 61  MTKIGAQEVELSFVTPAELWQESGRIEKFGKELLRFHDRKNNLFVLGPTHEEMMVDVVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQI+ KFRDE RPRFG+MR REF+MKD YSF  T E     ++ +  +
Sbjct: 121 RVTSYKNLPLNLYQIKTKFRDEARPRFGLMRGREFIMKDGYSFHATTEDLDREFDTVEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y +I  RLGL    + A+SG IGG  S E +VLAD+GE  +        
Sbjct: 181 YKKILTRLGLDFRIVEADSGAIGGSGSKELMVLADSGEDTIAVCSKCEY 229



 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 1/211 (0%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           I   N      I ++  V    A +   ++V+   +     E      +GIEVGHIF  G
Sbjct: 359 ICGANEAGYHYIGVDLSVLSDVAYFEDIAEVNEGDICPHCEEGTLSFTKGIEVGHIFKLG 418

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           T YS  + A F   +GK     MG+YG+G  R+VAAVIE  HD  G IW  + AP+ +++
Sbjct: 419 TTYSEALKAEFLDENGKAQPFIMGTYGMGVSRMVAAVIEQHHDDNGCIWTKATAPYMVNI 478

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +     D+    A EK+Y +L     +V  DD  E+ G +   A+L+GFP  +++G K +
Sbjct: 479 MISNIKDEAQVQAGEKLYKQLQDADVEVMLDDRKERFGFKMKDAELIGFPYTIVIG-KEL 537

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  ++I  R+T  + D+  EE+ N      
Sbjct: 538 VNGHMQIFERVTKEKTDIKSEEIFNKIMELV 568


>gi|289620774|emb|CBI52508.1| unnamed protein product [Sordaria macrospora]
          Length = 792

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/487 (16%), Positives = 151/487 (31%), Gaps = 71/487 (14%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD  +   +         + S G   WLP G +  + +   I+EE
Sbjct: 307 MAAHKKFL--EEAAKRDHRLIGKQ--QELFYFEECSPGSAMWLPHGMRINNAIMEYIKEE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +  LW +SG    Y  +M  L D + +     P +      +FR 
Sbjct: 363 YWKRGYDEVMTPNMFNTSLWEQSGHLAHYKDDMFIL-DVDKEQFGLKPMNCPAHAMMFRH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S++ LP       +  R+E      G+ R R F   DA+ F    +  K     +F 
Sbjct: 422 RDRSHKELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-CREDQIKAEVADLFD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +  LGL    ++  + P       E    A+    +                   
Sbjct: 481 FMKSFYGMLGLTF-KLKLSTRPEKYMGEIETWDRAEARLKEALNE--------------- 524

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               S     E      A      +  + D L    + +   ++      F  +Y    +
Sbjct: 525 -FTASTGGTWELNEGDGAFYGPKIDIAVLDCLNRPWQCATIQLDFQQPINFSLEYMTAET 583

Query: 300 ATFKGAD-------------------------------------GKDHYVQMGSYGIGAM 322
              +                                        G    V +     G++
Sbjct: 584 QAKQDESKLAPKAPEPEAPKEEEAPKEGEDKKKKPLLVKKPLAPGCARPVMIHRAMAGSI 643

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
               A++     GK   WP  ++P ++ +I +        D  +++   L K    V  D
Sbjct: 644 ERFTAILAEHFAGK---WPFWMSPRQVMVIPVGMG---FLDYAKEVALTLKKEKIHVDVD 697

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM----SLEEVINYA 438
             G  +  +   A L  +    +VG    ++ KV I++R     +       L E ++  
Sbjct: 698 SSGNTLQKKIRSAQLAQYNFIFVVGDDEKTNRKVNIRYRDDTSTQARDVPYPLSEAVDKL 757

Query: 439 SHRFSNN 445
               ++ 
Sbjct: 758 RALKADR 764


>gi|208434081|ref|YP_002265747.1| threonyl-tRNA synthetase [Helicobacter pylori G27]
 gi|238065115|sp|B5Z9Q1|SYT_HELPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|208432010|gb|ACI26881.1| threonyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 612

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 157/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A +   +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATSALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNE--- 475

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 476 RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E ++    +   
Sbjct: 590 AQYKMPLKEFLSMVESKMQE 609


>gi|254692871|ref|NP_001157090.1| threonyl-tRNA synthetase, mitochondrial isoform 3 [Mus musculus]
          Length = 642

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 148/463 (31%), Gaps = 58/463 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +     AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 210 LLRNWEARREAAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 269

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN----------------DKAMIYG 107
            G  E+  PTL S  LW +SG ++ Y  +M  L                       +   
Sbjct: 270 RGFSEVKTPTLFSTKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALK 329

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R   F   DA+ F   
Sbjct: 330 PMNCPAHCLMFAHRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA- 388

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P   +            ++  LG     +   + P G          A+    Q      
Sbjct: 389 PHQLEAEIQGCLDFLRCVYSVLGFSF-HLALSTRPPGFLGEPRLWDQAEQVLQQALEKFG 447

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                 P +                     A      +  L D+L    +     ++   
Sbjct: 448 EPWDLNPGDG--------------------AFYGPKIDVHLHDALGRPHQCGTIQLD--- 484

Query: 287 IFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G     V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 485 -FQLPLRF----DLQYKGPAGTPECPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 536

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           P ++ +I ++   +   +   ++   L   G     D D G  +  +   A L  +  Q 
Sbjct: 537 PLQVVVIPVRTEQE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQF 593

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +VG +  S   V ++ R      +  L E +       +   P
Sbjct: 594 VVGQREQSQRTVNVRTRDNRQLGERDLAESVQRLLELQNARVP 636


>gi|302816171|ref|XP_002989765.1| hypothetical protein SELMODRAFT_130418 [Selaginella moellendorffii]
 gi|300142542|gb|EFJ09242.1| hypothetical protein SELMODRAFT_130418 [Selaginella moellendorffii]
          Length = 647

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 140/404 (34%), Gaps = 39/404 (9%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+L+ +       H+ S G   +LP G    + +   IR E  + G  E+  P 
Sbjct: 272 EAKKRDHRLLGKNQQLFFFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRGFDEVVTPN 331

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG    Y + M    +   +     P +      +F+  ++SYR LP    
Sbjct: 332 IYNMKLWEQSGHAAHYKENMFVF-EIEKQEFGLKPMNCPGHCLLFQHRVRSYRELPLRIA 390

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+EL     G+ R R F   DA+ F +                  ++   G   
Sbjct: 391 DFGVLHRNELSGALTGLTRVRRFSQDDAHIFCM-ESQVYDEVKGCLDFLDYVYTIFGFTY 449

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++  + P            A+        +          +                 
Sbjct: 450 -DLKLSTRPENFLGESSLWDRAEGALADALNAHAKPWQMNEGDG---------------- 492

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               A      + ++ D+L    + +   ++      F   YS    A        +  V
Sbjct: 493 ----AFYGPKIDIQVSDALNRKFQCATIQLDFQSPIRFKLSYSAEDEAKI------ERPV 542

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++  + A++   + GK   WP  ++P +  ++ I    +  +D  E++ A+L
Sbjct: 543 IIHRAILGSIERMFAILLEDNAGK---WPFWLSPRQAIVLTI---SEKFKDYAEEVRAKL 596

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              G +V  D    ++  +   A +  +   ++VG+      +V
Sbjct: 597 HAAGFEVDVDVSDRKVDKKVREAQMAHYNYLLVVGAMEQEKGEV 640


>gi|268608298|ref|ZP_06142025.1| threonyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 646

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 160/446 (35%), Gaps = 46/446 (10%)

Query: 2   RRSKY--FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           + S+   +L +++E    A++  HK + +     M    + G+  WLP G K  + +   
Sbjct: 225 KASQLDEYLKMIEE----AKLRDHKKLGKEQALFMFDHTAPGMPYWLPRGWKLFNALLEY 280

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMT 115
            R      G  E+S P L   +LWV SG +D Y   M  + A+ +++     P +     
Sbjct: 281 WRGVHEDHGYTEISGPVLSKKELWVTSGHWDHYQDGMFVIPAEEDNEVYCAKPMNCPNAI 340

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            ++ +  +SY+ LP  F Q+ +  R E      G+ R ++F   DA+   +T E      
Sbjct: 341 KVYMNRQRSYKELPLKFNQVDVIHRKEKSGELNGLFRVQQFRQDDAHIL-VTEEQIASEI 399

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           N +      I++  GL+       + P            A+     +   K   D     
Sbjct: 400 NDIMDIATEIYNTFGLEY-KAELSTRPDDYMGDINVWNKAEADLKAILEDKYGPD----- 453

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                          E      A      + K+ D++    ++    ++    F     +
Sbjct: 454 -------------GYELNEGDGAFYGPKIDLKMKDAIGREWQMGTIQLD----FQLPLNF 496

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +  +DG +   V +     G+      +I  +  G    W   ++P ++ ++ 
Sbjct: 497 ----KMKYIASDGSEKQPVMIHRAIFGSFERFIGIITENFAGAFPFW---LSPMQVGIVP 549

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I+       D  +K+ A L K       D   + + ++         P  VI+G     +
Sbjct: 550 IRT---EHNDYAKKVAALLKKNHIRAEADYTDDNMKNKIRKFKDFKDPYVVIIGDSEAEN 606

Query: 414 SKVEIKHRLTGIREDMSLEEVINYAS 439
            +V I  R     +++ L++ I    
Sbjct: 607 EQVSINIRGNKQLKNVPLDKFIEMCR 632


>gi|229817161|ref|ZP_04447443.1| hypothetical protein BIFANG_02420 [Bifidobacterium angulatum DSM
           20098]
 gi|229784950|gb|EEP21064.1| hypothetical protein BIFANG_02420 [Bifidobacterium angulatum DSM
           20098]
          Length = 637

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 137/234 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R G + + + GI++WLPLG   L+ +  IIREE
Sbjct: 36  LRMSTMFLRTLREDPADADVVSDKLLQRAGYLRKAAPGIWTWLPLGLNVLNKIENIIREE 95

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 96  MASINAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 155

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 156 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 215

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF RL L  +P+ A +GP+GG  S EF+   + GE     S     + + +
Sbjct: 216 YERIFKRLDLDYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEA 269



 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 4/231 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +TGE   +     +           +  +    +V         T +    +  D  P+ 
Sbjct: 408 ETGEALRYLLDAHIARGSAWFTGADEAGVDYYDLVYGRDFEADGTVEAVEVRHGDMSPDG 467

Query: 275 KRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ 
Sbjct: 468 SGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETH 527

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
           HD +G+ WP  +AP ++ ++     D+   +  E++ A L   G +V +DD  +   G +
Sbjct: 528 HDERGLAWPSCIAPAQVHVVA-TGKDEKAFEGAEQLIAELEAKGVEVIFDDRKKVSPGVK 586

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  A+L+G P   +VG  +V+D  +EI+ R    +  +   E +     R 
Sbjct: 587 FKDAELIGVPQIAVVGRDYVNDGTIEIRDRNGDNKVIVPAAEAVETLLARI 637


>gi|224437778|ref|ZP_03658725.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313144224|ref|ZP_07806417.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313129255|gb|EFR46872.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 593

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 109/229 (47%), Positives = 150/229 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E P+DA + SH+ ++R G I Q   GIY++LPLG+K LD V  II+EE
Sbjct: 1   MRFSQLFVNTLKEAPKDALLKSHQYLVRGGFIQQVGSGIYNFLPLGKKLLDKVRFIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + T A E+ +  +  ADLW ESGRY+ YG+E+LRL DR +   + GPTHEEV+T I ++
Sbjct: 61  MDITNAQEILMGFVTPADLWRESGRYEKYGRELLRLVDRKENEFVLGPTHEEVVTFIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFRDE+RPRFG+MR REF+MKD YSF  + E     ++ M  +
Sbjct: 121 GVKSYKQLPVHLYQIHTKFRDEVRPRFGLMRGREFIMKDGYSFHSSFEDLDREFDVMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y +I  R+G+    + A+SG IGG  S EF+VLA  GE  +   K+   
Sbjct: 181 YKKILERIGVDFKIVEADSGAIGGSGSKEFMVLAPCGEDTIVVCKNCEY 229



 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 1/215 (0%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           + ++  +   +        +  D   +   ++ +     A      E         +   
Sbjct: 366 SHIYFDESLREAKGLICGANEKDYHFVGVDLDTFENLNFADLAQTQEGDLCPKCNGELYY 425

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGHIF  GTKYS  M+A F   DGK   + MG YG G  R++ A++E   D  G 
Sbjct: 426 TKGIEVGHIFKLGTKYSHAMNAQFLDKDGKAQDLIMGCYGFGVSRILPAILEQKSDELGC 485

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +W   V  F +++I     D    +   KIY      G DV  DD  E+ G +    +LL
Sbjct: 486 VWGKEVKVFDLAIIISNVKDIAQSEFATKIYEECKARGIDVLLDDRDERFGVKMKDFELL 545

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           GF   +IVG K +++ ++E+  R    + ++  +E
Sbjct: 546 GFSFALIVG-KGLNEGRLELIKREGLKKFELQCDE 579


>gi|315635814|ref|ZP_07891076.1| proline--tRNA ligase [Arcobacter butzleri JV22]
 gi|315479793|gb|EFU70464.1| proline--tRNA ligase [Arcobacter butzleri JV22]
          Length = 568

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/229 (42%), Positives = 137/229 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P  +E P DA + SH+ ++R G I Q   GIY ++PLG+  L+ +  I++EE
Sbjct: 1   MKFSKMFIPTTKETPNDATLPSHQYLVRGGFIAQTGAGIYDFMPLGKIVLEKIRTIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+    +    LW ESGR  + G EMLR  DR +   +  PT+EE + ++ ++
Sbjct: 61  MDEAGANEVQFGFVTPLTLWQESGRATTMGAEMLRFKDRKNGEFVLSPTNEEAVVNMVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQI  KFRDE RPRFG+MR REFLMKD YSF  + E     +N M  +
Sbjct: 121 RITSYKDLPLHLYQINTKFRDEARPRFGLMRGREFLMKDGYSFHSSEEDLVREFNLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y +I+ +LGL    + A+SG IGG  S EF V+AD+GE  +        
Sbjct: 181 YKKIYTKLGLDFRVVAADSGAIGGSGSKEFHVIADSGEDTLVVCDSCDY 229



 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 2/211 (0%)

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +   + +D   +N+ +               E    +    K    +GIE GHIF  GTK
Sbjct: 359 ACGANEEDYHLVNTDLSTLKDVKYYDLIAVQEGDICACCGGKLSYRKGIEAGHIFQLGTK 418

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  M+A F   +GK     MG YGIG  R+VAAVIE +HD KG +W  + APF + +I 
Sbjct: 419 YSSAMNANFLDENGKAKPFIMGCYGIGVSRLVAAVIEQNHDDKGCVWTKATAPFMVDIIV 478

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +  +      E++Y++L + G     DD    + G + +  +LLGFP  V++G K + 
Sbjct: 479 SNSKKEEEAKVGEELYSKLKQAGISTILDDRINARFGFKMSDFELLGFPYAVVIGKK-LE 537

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D  VEI  R T  + D+ ++EVI+       
Sbjct: 538 DGLVEIVDRKTLEKIDLKVDEVISKILELVK 568


>gi|225155152|ref|ZP_03723647.1| threonyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224804099|gb|EEG22327.1| threonyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 646

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/506 (17%), Positives = 146/506 (28%), Gaps = 100/506 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L    E    A++  H+ +   L+   I +   +G+  W P G      +   I 
Sbjct: 162 ASKDELAQFLERQEQAKLRDHRKLGRDLKLFHIDEDVGQGLILWTPAGSVVRQELQNFIS 221

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR----------------------- 95
           EE  + G  ++  P +    L+  SG +  Y                             
Sbjct: 222 EELRKQGYSQVFTPHIGKLALYKTSGHFPYYKDAQFPAIIEPDQLAQISAAGCSCADMTA 281

Query: 96  ------------LADRNDKAMI-----------------YGPTHEEVMTDIFRSHIKSYR 126
                       L +R   AMI                   P +      IF S   SYR
Sbjct: 282 RLEAVSPAFAAQLNERTGTAMIGADRINPDPTALLDGFLLKPMNCPHHIKIFASQPHSYR 341

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +    +R E      G+ R R F   DA+ F  T E               + 
Sbjct: 342 DLPVRLAEFGTVYRWEQSGELNGMTRVRGFTQDDAHLF-CTEEQIAQEIQGCLSLVKTVL 400

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             LG+    +R        +         D  E                           
Sbjct: 401 STLGMADYRVRVGLRDPDSNKYTGAAENWDKAENA------------------------- 435

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSA 300
                  TA          E    +    K        +G  +  GT    Y+LP     
Sbjct: 436 -----CRTAAQTLGVPFTEEPGEAAFYGPKIDFVIKDVIGREWQLGTVQVDYNLPVRFDL 490

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ GAD + H  V +     G+M     V+     G   +W   +AP ++ ++ I     
Sbjct: 491 SYIGADNQPHRPVMIHRAPFGSMERFCGVLIEHFAGDFPVW---LAPEQVRILPI---SD 544

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 EK+Y  L + G  V  D   ++IG++   A+L   P  ++ G K      + ++
Sbjct: 545 KVAAYSEKLYNELREAGVRVVLDSDSDKIGAKLRRAELSKIPYMIVAGQKEAEAEAISVR 604

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G    M   +            
Sbjct: 605 SRAKGDEGVMPFADWKARLLEEIRTR 630


>gi|154175003|ref|YP_001408388.1| prolyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|166980112|sp|A7GYU6|SYP_CAMC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112802606|gb|EAT99950.1| prolyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 567

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 139/231 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK++ P  +E P+DA + SH  ++R G + Q   G+Y++LPLG+  LD +  +++EE
Sbjct: 1   MRFSKFYAPTTKEAPKDASLPSHIFLVRGGFVEQIGSGLYNFLPLGKMMLDKITKVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E+S   + S +LW +SGR++ +GKE+LR  DR +   +  PT+EE    + R 
Sbjct: 61  MDAAGVLEVSFSVVTSGELWKQSGRFNVFGKELLRFKDRKENDFVLSPTNEEAAVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REF MKDAYSF       K  ++ M  +
Sbjct: 121 KVTSYKQLPLNIYQINTKFRDEARPRFGLLRGREFTMKDAYSFHANEADMKREFDLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  + C        
Sbjct: 181 YSKIFTRLGLNFRAVEADSGAIGGSGSKEFMVLAKNGEDDILCCDSCKYAA 231



 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 13/243 (5%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GP+G      +I     G+TQ+ C  +  D+     +    +      +V          
Sbjct: 337 GPVGLSGVDFYIDNELKGQTQMICGANEKDYHFVGVSVSSFNDERFKDLVSVQAGDICPK 396

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                          K   ++GIEVGHIF  G KYS  M ATF   +GK     MG YGI
Sbjct: 397 CGG------------KLELSKGIEVGHIFQLGYKYSSAMGATFLDENGKARPFLMGCYGI 444

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++A ++E+SHD +G +W     PF+  ++     D+       K+Y  L  +G  V
Sbjct: 445 GVSRLIAVMVEASHDDRGCVWKKECTPFECEIVISNLKDEAGVKFATKLYENLRNLGLCV 504

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +    +LLGFP  +IVG K + + +VE+  R   ++E +  +E+++   
Sbjct: 505 LLDDRNERFGVKMNDFELLGFPYAIIVG-KGLENGEVELITRDGLVKEVVKKDEILSVLK 563

Query: 440 HRF 442
            + 
Sbjct: 564 EKL 566


>gi|309809554|ref|ZP_07703412.1| proline--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|308170226|gb|EFO72261.1| proline--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
          Length = 483

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 133/225 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L N   II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRNAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 7/165 (4%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++A  G +G        V A   +  +        + +     + D      +I   + 
Sbjct: 326 IVKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFK 378

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + 
Sbjct: 379 VNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPII 438

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           MGSYGIG  R+++A++E      GI WP  VAPF+I +I +    
Sbjct: 439 MGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKK 483


>gi|86149734|ref|ZP_01067964.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840002|gb|EAQ57261.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 602

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 154/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +   A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|70993228|ref|XP_751461.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66849095|gb|EAL89423.1| threonyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
 gi|159125604|gb|EDP50721.1| threonyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 737

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 152/455 (33%), Gaps = 30/455 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + + A++R
Sbjct: 298 KQMQEHLKFLEE----AEKRNHLRIGKDQELFFFDEVSPGCPFLLPNGTKIFNALQALLR 353

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F
Sbjct: 354 AEYRKRGYQEVQTPNMYDVGIWKRSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLF 412

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 413 GHRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIF-CTQDQIASEIEGL 471

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ I   + 
Sbjct: 472 FDFLQSIYGLFGFTF-KLKLSTRPEKYLGDLETWNYAEEQLKSAMTKFKGKDWTIDEGDG 530

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F       +I +     +   +   + +   +       + +G  V          S  
Sbjct: 531 AFYGPKIDITIADALKREFQCATIQLDYQAPINFKLEYMTNEKGQAVMED-------SKN 583

Query: 298 MSATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T       G+   V +    IG+      ++     GK   WP  ++P +I ++ + 
Sbjct: 584 EGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGK---WPFWISPRQILIVPVM 640

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D  E++   L     +V  D  G  +  +     L  +    +VG++      
Sbjct: 641 P---AVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVGAQEKESRS 697

Query: 416 VEIKHRL---TGIREDM-SLEEVINYASHRFSNNR 446
           V I++R    T  +  M  LEE            R
Sbjct: 698 VNIRNRDDPATQHKGVMVPLEEARQKLRALRKERR 732


>gi|315930217|gb|EFV09332.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305]
          Length = 602

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 156/445 (35%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 515 AHIDYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|254692865|ref|NP_082207.2| threonyl-tRNA synthetase, mitochondrial isoform 1 [Mus musculus]
 gi|118597388|sp|Q3UQ84|SYTM_MOUSE RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|74216488|dbj|BAE25159.1| unnamed protein product [Mus musculus]
 gi|187956085|gb|AAI47502.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
          Length = 723

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 148/463 (31%), Gaps = 58/463 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +     AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 291 LLRNWEARREAAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 350

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN----------------DKAMIYG 107
            G  E+  PTL S  LW +SG ++ Y  +M  L                       +   
Sbjct: 351 RGFSEVKTPTLFSTKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALK 410

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R   F   DA+ F   
Sbjct: 411 PMNCPAHCLMFAHRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA- 469

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P   +            ++  LG     +   + P G          A+    Q      
Sbjct: 470 PHQLEAEIQGCLDFLRCVYSVLGFSF-HLALSTRPPGFLGEPRLWDQAEQVLQQALEKFG 528

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                 P +                     A      +  L D+L    +     ++   
Sbjct: 529 EPWDLNPGDG--------------------AFYGPKIDVHLHDALGRPHQCGTIQLD--- 565

Query: 287 IFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G     V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 566 -FQLPLRF----DLQYKGPAGTPECPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 617

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           P ++ +I ++   +   +   ++   L   G     D D G  +  +   A L  +  Q 
Sbjct: 618 PLQVVVIPVRTEQE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQF 674

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +VG +  S   V ++ R      +  L E +       +   P
Sbjct: 675 VVGQREQSQRTVNVRTRDNRQLGERDLAESVQRLLELQNARVP 717


>gi|205356549|ref|ZP_03223312.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345554|gb|EDZ32194.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 510

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 103 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 161

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 162 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 220

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 221 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 279

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 280 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPK 338

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 339 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 368

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 369 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 422

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 423 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 482

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 483 DRRAKEQKNLSLDEFIKLVKEKMSE 507


>gi|302820128|ref|XP_002991732.1| hypothetical protein SELMODRAFT_134156 [Selaginella moellendorffii]
 gi|300140413|gb|EFJ07136.1| hypothetical protein SELMODRAFT_134156 [Selaginella moellendorffii]
          Length = 647

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 144/404 (35%), Gaps = 39/404 (9%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A+   H+L+ +       H+ S G   +LP G    + +   IR E  + G  E+  P 
Sbjct: 272 EAKKRDHRLLGKNQQLFFFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRGFDEVVTPN 331

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW +SG    Y + M    +   +     P +      +F+  ++SYR LP    
Sbjct: 332 IYNMKLWEQSGHAAHYKENMFVF-EIEKQEFGLKPMNCPGHCLLFQHRVRSYRELPLRIA 390

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+EL     G+ R R F   DA+ F +                  ++   G   
Sbjct: 391 DFGVLHRNELSGALTGLTRVRRFSQDDAHIFCM-ESQVYDEVKGCLDFLDYVYTIFGFTY 449

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++  + P           L D  E  +  + +    P      D              
Sbjct: 450 -DLKLSTRPENFLGE---SALWDRAEGALADALNAHAKPWQMNEGDG------------- 492

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               A      + ++ D+L    + +   ++      F   YS    A        +  V
Sbjct: 493 ----AFYGPKIDIQVSDALNRKFQCATIQLDFQSPIRFKLSYSAEDEAKI------ERPV 542

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++  + A++   + GK   WP  ++P +  ++ I    +  +D  E++ A+L
Sbjct: 543 IIHRAILGSVERMFAILLEDNVGK---WPFWLSPRQAIVLTI---SEKFKDYAEEVRAKL 596

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              G +V  D    ++  +   A +  +   ++VG+      +V
Sbjct: 597 HAAGFEVDVDVSDRKVDKKVREAQMAHYNYLLVVGAMEQEKGEV 640


>gi|325911837|ref|ZP_08174241.1| proline--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|325476343|gb|EGC79505.1| proline--tRNA ligase [Lactobacillus iners UPII 143-D]
          Length = 566

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 4/219 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           K   +  + +  +D+  I +  +I   +     A     N    D +          IEV
Sbjct: 352 KGLYNVVVGANESDYQYINA--NIDRDFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEV 409

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GT Y+  M+A F   +GK   + MGSYGIG  R+++A++E       I WP  V
Sbjct: 410 GHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNSIFWPKEV 469

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APF+I +I +   +       +K+    S    DV +DD  E+ G +F  ADL+G P+++
Sbjct: 470 APFEIHIIQMNMKNDEQTVVSKKLEEIFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRI 528

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IVG + VS+  VE+K        +MSL+ +  Y S    
Sbjct: 529 IVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKELR 566


>gi|227529103|ref|ZP_03959152.1| prolyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227350947|gb|EEJ41238.1| prolyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 580

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/244 (42%), Positives = 146/244 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++++LP+  + +  V  IIR+E
Sbjct: 1   MQQSKILIPTKKEAPSDAEALSHKMMVRAGYIYQVSAGVWAYLPMAYRVIRKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MEKAGAVEMMMPALLPADLWKESGRYESYGDNLFKLKDRRDRDFIMGPTHEETFTEVIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQARA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +       +    + F 
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDGDYAANLEKATSKFT 240

Query: 241 DIIS 244
            +  
Sbjct: 241 GVQQ 244



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 2/230 (0%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            GE     + +++   +       DD     +             D  N K  +  P+  
Sbjct: 342 VGEDVKIYADNYVKVMVNMACGANDDGHHYINANIDRDFCVDQFGDFRNVKEGEIAPDGH 401

Query: 276 RVSA-RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            +    GIE+GHIF  GT YS  + A     +G+   V MGSYGIG  R+++AV E + D
Sbjct: 402 PIKFTPGIEIGHIFKLGTHYSKKLGAQVLDNNGRLVDVIMGSYGIGVSRLLSAVAEQTAD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G++WPDS+APF + +I + A      +   ++   L K G DV  DD  E+ G +FA 
Sbjct: 462 DNGLVWPDSIAPFDVHVIPVNAKKADQMEMANELTVALEKAGYDVLVDDRKERAGVKFAD 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +DL+G P+++ VG K  SD  VE+K R TG   ++  EEV+N  +     
Sbjct: 522 SDLIGIPIRITVGKK-ASDGIVEVKIRKTGETVEVKTEEVVNTVAILLKQ 570


>gi|315638151|ref|ZP_07893333.1| proline--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315481687|gb|EFU72309.1| proline--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 568

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 99/231 (42%), Positives = 140/231 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+++ P  +E P+DA + SH  + R G I Q+  G+Y++LPLG+     + +II+EE
Sbjct: 1   MKFSQFYAPTFKEAPKDATLPSHIFLTRAGFIEQNGSGLYNFLPLGKMVYSKIESIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E S+     A  W ESGRY+ +GKE+LR  DR +   + GPTHEE M ++ ++
Sbjct: 61  MDKAGALETSLSFTTPASFWRESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLNVVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+ LKFRDE RPRFG++R REF+MKDAYSF    E     +  M  +
Sbjct: 121 KITSYKQLPLNLYQVGLKFRDEARPRFGLLRCREFVMKDAYSFHKDEEDLTREFENMQGT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +I  RLGL    + A+SG IGG  S EF+VLA  GE  +          
Sbjct: 181 YSKILKRLGLDFRVVEADSGAIGGSGSKEFMVLAQNGEDDILLCSHCDYAA 231



 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 1/223 (0%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             +   +  D        +  D   +   V               E    +    K   +
Sbjct: 346 DFYIDNELKDEKQMIMGANEIDYHFVGIDVVNLNEERFKDLVEVKEGDCCAKCGAKLTKS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GTKYS  M ATF   +GK     MG YG+G  R+VA  +E+S D +GI+
Sbjct: 406 KGIEVGHIFKLGTKYSAAMQATFLDENGKAKPFVMGCYGMGVSRLVAVAVEASFDERGIV 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W ++++PFK+ +I     D+   +    +Y  L K+G DV  DD  E+ G +    +L+G
Sbjct: 466 WQEALSPFKLVIILSNIKDEKALNLGISLYEDLRKLGIDVLLDDRNERYGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F   +I+G K + ++++E+  R    +  +  +  +       
Sbjct: 526 FNYALIIG-KGLENNELELVKRKDLGKIKLKADTALTELKKVL 567


>gi|91772258|ref|YP_564950.1| prolyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121689406|sp|Q12ZC6|SYP_METBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91711273|gb|ABE51200.1| Prolyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 478

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 165/448 (36%), Gaps = 82/448 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  +LQ     AEI           +    KG Y W P G     NV  IIR   +
Sbjct: 16  FSEWYNGMLQI----AEIMD---------VRYPVKGSYVWYPFGFSIRRNVYDIIRGLLD 62

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
           +    E   P L    +   E+     + +E+  +        D  +   PT E  +  +
Sbjct: 63  K-DHQETLFPLLIPENEFMKEAEHIKGFEEEVYWVLNGGTTPLDVKLALRPTSETAIYPM 121

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNK 176
           +R  ++S+ +LP   YQI   FR E +    ++R RE    K+A++   T + +     +
Sbjct: 122 YRLWVRSHADLPLKLYQIVNTFRYETKHTRPLIRLREITSFKEAHTVHATWDEAASQVEE 181

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                     RL ++     A                       V  SK       P  +
Sbjct: 182 AI--------RLYIEFYKRLAIP---------------------VLPSKRPSWDKFPGAD 212

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                                               ++     + ++VG   + G  ++ 
Sbjct: 213 YTIA-------------------------------VDSLMPDGKTLQVGTAHHLGDNFAK 241

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                ++  DG+  Y     YG+ + R +A ++ +  D KG++ P  VAP ++ +I I  
Sbjct: 242 TFDIKYEDVDGEQVYAHQTCYGV-SERCIATLLSTHGDDKGLVLPPEVAPTQVVIIPIIF 300

Query: 357 HD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            + +   +AC  + A L   G  V  DD  ++ GS++   ++ G PL++ +G + + +  
Sbjct: 301 KEPEAVLNACNDVKAELEAAGVRVTIDDSDKRPGSKYYKWEMKGVPLRIEIGPRDLKNEA 360

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
             +  R TG +E + L  + +    RF 
Sbjct: 361 AMLARRDTGEKEQVPLASIKDEVLSRFK 388


>gi|322697146|gb|EFY88929.1| threonyl-tRNA synthetase, putative [Metarhizium acridum CQMa 102]
          Length = 759

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/502 (16%), Positives = 163/502 (32%), Gaps = 95/502 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    A+   H+L+ +          S G   +LP G +  + + A++RE+ 
Sbjct: 288 KEWLTYLEE----AKKRDHQLIGKNQKLFWFSPLSPGSPFFLPHGTRIFNAIQAMLREQY 343

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------------------- 96
              G  E+  P +  A LW  SG +D Y ++M R+                         
Sbjct: 344 WMRGYDEVHSPLMYDAQLWKTSGHWDHYQEDMFRVPLKHTHGAAPDASAASGPDASKDAN 403

Query: 97  ----AD---------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                D           ++     P +      +F S  +SYR+LP+      +  R+E 
Sbjct: 404 KPADKDGENAEVAKLEQERLFALKPMNCPGHALMFASEERSYRSLPWRVADFSVLHRNEA 463

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R+F   DA+ F  T +        +F     ++   G     ++  + P 
Sbjct: 464 SGALTGLTRVRKFQQDDAHIF-CTIDQVTDELRGLFKFMTHVYTMFGFPF-KLKLSTRPD 521

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                      A+    +        D+ I   +  F                       
Sbjct: 522 SYMGKLSDWDAAEDRLKKALQEFKGDDWVINPGDGAFYG-------------------PK 562

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------------GK 308
            +  + D+L    + +   ++    F     ++L        AD              G 
Sbjct: 563 IDVTVHDALGREFQCATIQLD----FQLPQNFNLLYRTNESTADRAKGEGEEEGDIPSGM 618

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    IG+      ++     GK   WP  ++P ++ +I I    +   D   ++
Sbjct: 619 ARPVMIHRAVIGSFERFMGILIEHFAGK---WPFWLSPRQVMVIPIMKDAE---DYAREV 672

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D  G  +  +   A L  +   ++VG++ +    V I++R     + 
Sbjct: 673 RDILHDAKLYADVDVSGNTLQKKIRAAQLAQYNFVMVVGAEEIEKRAVNIRNRDDPSSQQ 732

Query: 429 ----MSLEEVINYASHRFSNNR 446
               + L++V+       +  R
Sbjct: 733 KGAMIDLDDVVKRLVELKAERR 754


>gi|300858703|ref|YP_003783686.1| prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686157|gb|ADK29079.1| Prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
          Length = 585

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 148/282 (52%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R   I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSALFLRTLREDPADAEVPSHKLLVRARYIRRAAPGVYTWLPLGLRTLKKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DGIGAQELLFPALLPREPYQATNRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T +G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDDGLESSYQRHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI  RLG++     A SG +GG  S EF+ +++ GE     +                 
Sbjct: 184 QRILDRLGVEYAICSATSGAMGGSASEEFLAISENGEDTFVRATQGNYAANVEAV----- 238

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +            P A   D  N +  DSL    + +   IE
Sbjct: 239 VTQPGVERSIEGLPEAKEYDTPNSETIDSLVAWAQNAGITIE 280



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KY+          +GK     MGSYGIG  R++A + E  HD KG+ 
Sbjct: 423 RGIEVGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGVSRLMAVLAEQRHDEKGLN 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  VAPF + ++ +   D    +A + + + L   G +V +DD  +   G +F  A+LL
Sbjct: 483 WPIEVAPFAVHVV-VANKDTAAIEAGDALVSELDAAGVEVLFDDRPKVSPGVKFKDAELL 541

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P  V++G +   + KVE++ R      ++   E     
Sbjct: 542 GMPYVVVLG-RSFKEGKVELRVRGE-EAVEIPAAEAAARI 579


>gi|116670864|ref|YP_831797.1| threonyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|166223319|sp|A0JXC7|SYT_ARTS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116610973|gb|ABK03697.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Arthrobacter
           sp. FB24]
          Length = 669

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/464 (17%), Positives = 142/464 (30%), Gaps = 60/464 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L   QE   +AE   H+ +     +     +   G+  + P G      +    R+
Sbjct: 242 TKDALKAYQERIAEAERRDHRKLGAELDLFSFPDELGSGLPVFHPKGGIIRKAMEDYSRQ 301

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYG 107
                G   +  P +    L+  SG  D Y + M      +             +     
Sbjct: 302 RHVDAGYDFVYTPHITKGHLYEVSGHLDWYKEGMFPAMHIDAELNEDGTVRKPGQDYYLK 361

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +  +   IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +  T
Sbjct: 362 PMNCPMHNLIFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CT 420

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVF 222
            E  K          L +    GL    +   +      +G D + +    A     +V 
Sbjct: 421 REQMKDELTTTLNFVLGLLKDYGLDDFYLELSTKNEDKFVGDDATWD---EATRTLAEVA 477

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +      P P                       A      + +  D+L    ++S   +
Sbjct: 478 EASGLELIPDPG--------------------GAAFYGPKISVQAKDALGRTWQMSTIQL 517

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++ L   A    ADG     V +     G++     V+   + G    W 
Sbjct: 518 D----FNLPERFELEFQA----ADGTRQRPVMIHRALFGSVERFMGVLTEHYAGAFPAW- 568

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++  I +    +   D    +  +L  VG     D   ++   +   A     P
Sbjct: 569 --LAPVQVVGIPVA---EAFNDYMFDVVDQLKAVGIRAEVDISSDRFPKKIRTASKDKIP 623

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +I G +      V  + R       + + E +        N 
Sbjct: 624 FVLIAGGEDAEAGAVSFRFRDGSQDNGVPVAEAVQRIVEAVRNR 667


>gi|86151198|ref|ZP_01069413.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841545|gb|EAQ58792.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 602

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSCFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|315054053|ref|XP_003176401.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311338247|gb|EFQ97449.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 765

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 148/465 (31%), Gaps = 33/465 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 309 KLLQEHLKFLEE----AEKRNHLKIGKEQELFFFDEVSPGCPFLLPNGTKIFNALQKLLR 364

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 365 TEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMF 423

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T          +
Sbjct: 424 GHRERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTDNQIIGEIEGL 482

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+    +        ++ I   + 
Sbjct: 483 FDFLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGAEWEIDEGDG 541

Query: 238 DFD---------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            F          D +            Y    +   E +           A         
Sbjct: 542 AFYGPKIDITISDALKREHQCATIQLDYQLPLNFKLEYMTGETIPKSAAPAAPQAPQAEA 601

Query: 289 YF--GTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               G+  S    +       G+   V +    IG+      ++     GK   WP  ++
Sbjct: 602 KPEGGSNSSQAQPSDSSNPGPGRARPVMIHRAIIGSFERFFGILIEHFGGK---WPFWLS 658

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P +I ++ + A      D  E++   L     +V  D  G  +  +     L  +    +
Sbjct: 659 PRQILIVPVMAS---ANDYVEELQEILRGDKLNVDIDLSGHTMQKKIRNGQLAQYNFIFV 715

Query: 406 VGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           VG++      V I++R     +     + LEE            R
Sbjct: 716 VGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKERR 760


>gi|312077291|ref|XP_003141239.1| threonyl-tRNA synthetase [Loa loa]
 gi|307763596|gb|EFO22830.1| threonyl-tRNA synthetase [Loa loa]
          Length = 681

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 159/444 (35%), Gaps = 50/444 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +  + +E    A    H+ + R       H  S G   W P G    +++   IR
Sbjct: 266 KQLKEWQRLQEE----AAKRDHRKIGRDQELYFFHPLSPGSAFWYPKGAHIYNSLCNFIR 321

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E  + G  E+  P + ++ LW +SG ++ Y   M ++ D   +     P +      ++
Sbjct: 322 KEYRKRGFTEVISPNMYNSKLWEQSGHWEHYSDNMFKI-DIEKETFGLKPMNCPGHCLMY 380

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
               +++  LP  +    +  R +      ++    F   DA+ F    +          
Sbjct: 381 SHMPRTHNELPLRYADFGVLHRKKTVEEITII----FQQDDAHIF-CRQDQVVEEIMNCI 435

Query: 179 VSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++ +   +  +   + P +G     E    A+    +   +        P +  
Sbjct: 436 DFLKYAYNDVFGFTFKLNLSTRPEVGYLGDIETWNSAEDKLKEALNASGHKWELNPGDG- 494

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D+L    + +   ++    F    ++   
Sbjct: 495 -------------------AFYGPKIDITIQDALRRLHQCATIQLD----FQLPIRF--- 528

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++   + +    V +    +G++  + A++  ++ GK   WP  ++P +  +I +  
Sbjct: 529 -DLSYFDENSERQRPVMIHRALLGSIERMTAILAENYGGK---WPFWLSPRQAKVITV-- 582

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +   D    +  ++ + G +V +D D  + +  Q   A L  F   ++VG     +  
Sbjct: 583 -HESQNDYGRVVQRKIYEAGFEVEFDADSSDTLNKQIRNAQLAQFNFILVVGPTEARNGT 641

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           V ++ R   +R ++ LE++I    
Sbjct: 642 VNVRTRDNAVRGEIKLEDLIEKFK 665


>gi|302191444|ref|ZP_07267698.1| prolyl-tRNA synthetase [Lactobacillus iners AB-1]
          Length = 566

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 9/250 (3%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++A  G +G        V A   +  +        + +     + D      +I   + 
Sbjct: 326 IVKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFK 378

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + 
Sbjct: 379 VNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPII 438

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+    S
Sbjct: 439 MGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFS 498

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MSL+ 
Sbjct: 499 DK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDS 556

Query: 434 VINYASHRFS 443
           +  Y S    
Sbjct: 557 LTEYISKELR 566


>gi|325913484|ref|ZP_08175850.1| proline--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|325477253|gb|EGC80399.1| proline--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 566

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 9/250 (3%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++A  G +G        V A   +  +        + +     + D      +I   + 
Sbjct: 326 IVKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFK 378

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + 
Sbjct: 379 VNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPII 438

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+    S
Sbjct: 439 MGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFS 498

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MSL+ 
Sbjct: 499 DK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDS 556

Query: 434 VINYASHRFS 443
           +  Y S    
Sbjct: 557 LTEYISKELR 566


>gi|241888520|ref|ZP_04775828.1| prolyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241864787|gb|EER69161.1| prolyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 572

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 96/224 (42%), Positives = 145/224 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R+SK F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  + +  +  +IREE 
Sbjct: 8   RQSKTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATRVIQKIEKVIREEH 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ GA E+ +P LQS + W +SGR+D  G+E++R+ DR        PT EE+++    + 
Sbjct: 68  SKIGAAELLMPILQSDEYWKKSGRWDKMGEELIRVTDRKKAGYALSPTAEEIVSQTVNNM 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKDAYSF  +PE  + +Y   + +Y
Sbjct: 128 VTSYKQLPMNLYQIQTKFRDEIRPRLGLLRCKEFIMKDAYSFHDSPESLRETYKDYYQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             IF R  LK   ++A+SG IGG  +HEF  LA+ GE  +  ++
Sbjct: 188 SSIFDRFELKYRAVQADSGNIGGSYTHEFQALAEVGEDTIVYTE 231



 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           +M       N      I++N    +  A Y        +   D     K    +GIEVG 
Sbjct: 359 YMYNHSCGANKKGFHYINVNPGDYEIDAHYDLRMIEEGDLAEDLSGPVKFA--KGIEVGQ 416

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           +F  G  YS  M  T+  A+G+ ++  MG YGIG  R ++A+IE  +D KGIIWP  VAP
Sbjct: 417 VFELGKGYSEAMDVTYLDANGRANHFYMGCYGIGVTRCISAIIEQHNDEKGIIWPKEVAP 476

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           +++ L+ +    +      +++YA+L+  G +V +DD  E+ G +F  ADL+G PLQV+V
Sbjct: 477 YQVHLVCVDVKKEDQVKLSDELYAQLTAAGYEVLYDDRAERAGVKFNDADLIGIPLQVVV 536

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G K   +  VE+K R T  + D  + +V+     
Sbjct: 537 GKK-AGEGIVEVKERQTLEKVDTQVVDVLAKVEA 569


>gi|329919866|ref|ZP_08276804.1| proline--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|328936956|gb|EGG33386.1| proline--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 566

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 9/250 (3%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++A  G +G        V A   +  +        + +     + D      +I   + 
Sbjct: 326 IVKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFK 378

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + 
Sbjct: 379 VNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPII 438

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+    S
Sbjct: 439 MGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFS 498

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MSL+ 
Sbjct: 499 DK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDS 556

Query: 434 VINYASHRFS 443
           +  Y S    
Sbjct: 557 LTEYISKELR 566


>gi|325527705|gb|EGD04994.1| threonyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 406

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 152/429 (35%), Gaps = 45/429 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L        S G   W P G   L  V   IR    + G  E+  P + +
Sbjct: 5   DHRVLGNKLELFHQ--QDESPGAIFWHPRGMVLLRVVEDYIRARMRQAGFSEVRTPQIIA 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW +SG ++ +G+ M  L   +D+     P        IFR  ++SYR+LP  + +  
Sbjct: 63  RSLWEQSGHWEKFGRGMFSLQS-DDRPYCLKPMSCPCHVQIFRKGVRSYRDLPVRYSEFG 121

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+MR+R F   DA+     P+  +    +  +    I+   G     +
Sbjct: 122 AVHRAEPSGALHGLMRARAFTQDDAHVL-CRPDQVEAEVARFCMLLKSIYADFGFGGFDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P            A+        +          E   +   +  + +  Q    
Sbjct: 181 ALSTRPAVRAGDEAVWDRAEAMLASAARAAGLDFSVRAGEGAFYGPKLEFHLLDRQ---- 236

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYV 312
                                   R  + G I      + LP  + A +   DG +   V
Sbjct: 237 -----------------------GRQWQCGTI---QLDFVLPERLGAAYVAEDGARAVPV 270

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++     V+   ++G    W   +AP +I + NI  HD+  R   +++ +  
Sbjct: 271 MLHHAVLGSLERFIGVLLEHYEGWLPTW---LAPDQIVVANI-GHDE--RAFADRVASAF 324

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +GC V  D   E++  +   A  L  P+  + G K      V ++ R  G  + +SL 
Sbjct: 325 EAIGCRVLRDFRAERLPRKIFDARALAAPIVAVTGRKEALAGAVSLRMR-NGESQVLSLA 383

Query: 433 EVINYASHR 441
           + + +    
Sbjct: 384 DALAHLKQH 392


>gi|119499848|ref|XP_001266681.1| threonyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
 gi|119414846|gb|EAW24784.1| threonyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
          Length = 737

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 153/455 (33%), Gaps = 30/455 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + + A++R
Sbjct: 298 KQMQEHLKFLEE----AEKRNHLRIGKDQELFFFDEVSPGCPFLLPNGTKIFNALQALLR 353

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F
Sbjct: 354 AEYRKRGYQEVQTPNMYDVGIWKRSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLF 412

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 413 GHRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIF-CTQDQIASEIEGL 471

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ I   + 
Sbjct: 472 FDFLQSIYGLFGFTF-KLKLSTRPEKYLGELETWNYAEEQLKSAMTKFKGKDWTIDEGDG 530

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F       +I +     +   +   + +   +       + +G  V        + S  
Sbjct: 531 AFYGPKIDITIADALKREFQCATIQLDYQAPINFKLEYMTNEKGQAVM-------EESKT 583

Query: 298 MSATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              T       G+   V +    IG+      ++     GK   WP  ++P +I ++ + 
Sbjct: 584 EGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGK---WPFWISPRQILIVPVM 640

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D  E++   L     +V  D  G  +  +     L  +    +VG++      
Sbjct: 641 P---AVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVGAQEKESRS 697

Query: 416 VEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           V I++R     ++    + LEE            R
Sbjct: 698 VNIRNRDDPATQNKGVMVPLEEARQKLRALRKERR 732


>gi|149193855|ref|ZP_01870953.1| prolyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149135808|gb|EDM24286.1| prolyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 574

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 143/231 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+E P+DA   SH  ++R G I Q + GIY + PLG+  LDN+  II++E
Sbjct: 1   MRFSRLFCYTLKEAPKDAVTPSHIYLIRGGYIKQVAAGIYDFAPLGKIVLDNIRDIIKKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +  +   +LW E+GR   YG E+LR+ DR     +  PT+EE + D+ RS
Sbjct: 61  MDNSGAQEVMLSFITPYELWEETGRAKKYGDELLRIEDRKGNKFVLSPTNEESIVDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF    E     +N M  +
Sbjct: 121 YVKSYKQLPINLYQINLKFRDEARPRFGLLRGREFIMKDAYSFHKDEEDLDREFNLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y +IF ++GL    + A+SG IGG  S EF+VLA+TGE  +    +     
Sbjct: 181 YKKIFSKMGLDFRVVEADSGAIGGSGSKEFMVLANTGEDDIVVCSECNYAA 231



 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 3/221 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEV 284
             +  +   N     I     +            D+   K  D  P+  +     +GIEV
Sbjct: 355 MAEELVCGANKKDYHIKGAGLLDANLLGNLTIYRDIAAVKEGDLCPKCGKPLKITKGIEV 414

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  G  YS PM+ATF   +GK     MG YGIG  R++AA IE +HD KGIIWP  +
Sbjct: 415 GHIFKLGDVYSKPMNATFLDENGKAKPFIMGCYGIGVSRLIAAAIEQNHDDKGIIWPKEI 474

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APF + +I      +      E +Y +L      V  DD  E+ G +    +LLGFP  V
Sbjct: 475 APFVVDIIIGDVKKENQVKFAENLYEKLKSENIKVLLDDRKERFGVKINDFELLGFPYAV 534

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           IVG K + D  VEI+ R +  + ++  +EV ++   +   +
Sbjct: 535 IVGKK-LKDGIVEIRDRRSDEKIEVKSDEVFDFLKEKLKKD 574


>gi|309804213|ref|ZP_07698290.1| proline--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|312875784|ref|ZP_07735776.1| proline--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|308163616|gb|EFO65886.1| proline--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|311088688|gb|EFQ47140.1| proline--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 566

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 225



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 9/250 (3%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++A  G +G        V A   +  +        + +     + D      +I   + 
Sbjct: 326 IVKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFK 378

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + 
Sbjct: 379 VNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPII 438

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+    S
Sbjct: 439 MGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFS 498

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MSL+ 
Sbjct: 499 DK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDS 556

Query: 434 VINYASHRFS 443
           +  Y S    
Sbjct: 557 LTEYISKELR 566


>gi|157736342|ref|YP_001489025.1| threonyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|157698196|gb|ABV66356.1| threonyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 602

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E   RD      +L L T        G+  WLP G +    +  ++ +     G
Sbjct: 197 YTRMLEEAKKRDHRKLGTELELFT-FNDDVGAGLPMWLPKGARLRSKLEHLLYKAHRIRG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  A++W  SG Y +Y + M      +D+     P +      IF++++ SY
Sbjct: 256 YEPVRGPEILKAEMWKISGHYANYKENMY-FTTIDDQEYGIKPMNCVGHIQIFKNNLVSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP   ++  +  R E+     G+ R REF   D++ F  T +  K    ++      +
Sbjct: 315 KELPKKLFEYGVVHRHEMSGAMHGLFRVREFTQDDSHIF-CTQDQIKQVIFEVLEFVDTL 373

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                 K   +   + P        F      G        +                  
Sbjct: 374 LKVFDFKY-EIEVSTKPEKAIGDDIFWEKTTKGIMDALDENNISYGIDEGGG-------- 424

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D++    +     +++              +  +  
Sbjct: 425 ------------AFYGPKIDIKILDAIGRKWQCGTVQVDMNLPSR--------FNVEYIN 464

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G K+  V +    +G+      ++     G+    P  +AP ++ L+ I        +
Sbjct: 465 EKGEKEQPVMIHRAILGSFERFIGILTEHCAGEF---PFIIAPTQVILVPIA---DSHVE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L +   D    +M E +  +  +A+    P+ V++G + V +  V +++R T
Sbjct: 519 YAKELQKALLENDLDSEIYNMNESLNKRIRMAEKQRVPMIVVIGDEEVENKTVALRNRRT 578

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             + +MS  E I+  +   + +R
Sbjct: 579 REQSNMSKNEFISMLNEIKNGSR 601


>gi|134292577|ref|YP_001116313.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|134135734|gb|ABO56848.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 402

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 146/429 (34%), Gaps = 45/429 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L        S G   W P G      +   IR    + G  E+  P + S
Sbjct: 5   DHRVLGNKLDLFHQ--QDESPGGIFWHPRGMVLYRVIEEYIRVRMRQAGFSEVRTPQILS 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            DLW  SG ++ +G  M  L   +       P        IF+   +SYR+LP  + +  
Sbjct: 63  RDLWERSGHWEKFGPNMFSLES-DRNPYCLKPMSCPCHVQIFKKGSRSYRDLPIRYCEFG 121

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+MR+R F   DA+   L P+  +    +       I+   G     +
Sbjct: 122 AVHRAEPSGALHGLMRARAFTQDDAHVLCL-PDQIEDEVARFCKLLKAIYADFGFGECDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P            ++        +       +  E   +   +  + +  Q    
Sbjct: 181 ALSTRPPVRAGDDAVWDRSEAMLASAARAAGLEFAILAGEGAFYGPKLEFHLVDRQ---- 236

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYV 312
                                   R  + G I      + LP  + A++   DG K   V
Sbjct: 237 -----------------------GRKWQCGTI---QLDFVLPERLGASYVAEDGAKATPV 270

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++     ++   ++G    W   +AP +I + NI       R   ++  +  
Sbjct: 271 MLHHAVLGSLERFIGILLEHYEGWLPTW---LAPDQIVVANIGDD---HRAFADRAASAF 324

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +GC V  D   E++  +   A  L  P+  I G K     +V ++ R  G +  M+++
Sbjct: 325 EDIGCRVLRDFRAERLPRKIFDATELAAPIVAIAGRKEALAGEVSLRMRG-GEQHVMTID 383

Query: 433 EVINYASHR 441
             + +    
Sbjct: 384 AALAFLKQH 392


>gi|289548806|ref|YP_003473794.1| prolyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182423|gb|ADC89667.1| prolyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 570

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 107/231 (46%), Positives = 152/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF    +++P D E  SHK +++ G I Q + G+Y + P   + L  + +I+R+E
Sbjct: 1   MRWSRYFWYTSKDDPADVEAPSHKYLVKGGFIKQIASGVYQYTPPALRVLRKIESIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +RTGA E+ +  L  A+LW E+GR+D YG+E+  L DR+ +    GPTHEE +TD+FRS
Sbjct: 61  MDRTGAQEVLLTVLNPAELWRETGRWDLYGRELFTLKDRHGRDYCLGPTHEEEVTDLFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR LP   YQIQ+KFRDE RPRFG++R+REF+MKDAYSFDL    +  SY  M  +
Sbjct: 121 YVTSYRQLPLILYQIQVKFRDEKRPRFGLIRAREFIMKDAYSFDLDEFSAIMSYEAMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF ++ LK++ + A  G IGG  SHEF+VL D GE +V   ++     
Sbjct: 181 YDRIFKKMRLKTLMVEASVGAIGGKSSHEFVVLTDYGEARVAYCENCSYAA 231



 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             Y    DV   +  D  P+        RG+EVGHIF  GT+YS PM A  K ++GKD  
Sbjct: 376 FHYGDMVDVCQVEEGDPCPKCGAPLKVNRGLEVGHIFLLGTRYSEPMKAFVKDSEGKDVP 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V MG YGIG  R ++A++E  HD KGI WP  VAPF++ ++ +   D+  R   EK+Y  
Sbjct: 436 VVMGCYGIGISRCMSAIVEQHHDEKGIKWPTPVAPFELDIVCVNISDEEQRAVAEKLYTT 495

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             ++G +V +DD  E  GS+FA ADL GFP +++VG K V + KVE++ R TG R D  +
Sbjct: 496 AQEMGVEVLYDDRDESPGSKFADADLCGFPYRIVVGKK-VKEGKVEVQSRHTGERWDAPI 554

Query: 432 EEVINYASHRFSNNR 446
           EE +          +
Sbjct: 555 EEAVGQVKELIHQEK 569


>gi|229491972|ref|ZP_04385789.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229321104|gb|EEN86908.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 649

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/455 (15%), Positives = 141/455 (30%), Gaps = 52/455 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 215 YLELLAEAERRDHRKLGTELDLFS-FPDELGSGLPVFHPKGGIIRTEMENYSRSRHIEAG 273

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              ++ P +    L+  SG  D Y   M      +++                 P +  +
Sbjct: 274 YEFVNTPHITKGHLYEVSGHLDWYRDGMFPAMHVDEELNEDGTVRKPGQDYYLKPMNCPM 333

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR+  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  + 
Sbjct: 334 HNLIFRARGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIY-CTREQMRD 392

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                    L +    GL    +   +  P     S +    A     +V  +      P
Sbjct: 393 ELTTTLQFVLNLLKDYGLDDFYLELSTKNPDKFVGSDDVWEEATATLAEVGEASGLTLVP 452

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + ++ D+L    ++S   ++    F   
Sbjct: 453 DPG--------------------GAAFYGPKISVQVKDALGRTWQMSTIQLD----FNLP 488

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       + G DG K   V +     G++     V+   + G    W   +AP ++ 
Sbjct: 489 ERF----ELEYTGNDGVKTRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVV 541

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +    +   D    +  +L   G     D   +++  +         P  ++ G + 
Sbjct: 542 GIPVA---EAFADHLFDVTKKLKAAGVRAEVDFSDDRMQKKIRNHTTQKVPFMLLAGERD 598

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V    V  + R       + +++ +   +      
Sbjct: 599 VEAGAVSFRFRDGTQINGIPVDDAVRIITEWIGRR 633


>gi|115389848|ref|XP_001212429.1| threonyl-tRNA synthetase [Aspergillus terreus NIH2624]
 gi|114194825|gb|EAU36525.1| threonyl-tRNA synthetase [Aspergillus terreus NIH2624]
          Length = 713

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 149/462 (32%), Gaps = 49/462 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +          S G    LP G K  + +  ++R
Sbjct: 279 KQMQEHLKFLEE----AEKRNHLRIGKDQELFFFDDVSPGCAFLLPNGTKIFNALQTLLR 334

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F
Sbjct: 335 SEYRKRGYQEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLF 393

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +        +
Sbjct: 394 GHRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIF-CTQDQIMSEIEGL 452

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ I   + 
Sbjct: 453 FDFLQSIYGLFGFTF-KLKLSTRPEKYLGELETWNYAEEQLKAAMTKFKGDDWTIDEGDG 511

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F       +I                    D+L    + +   ++      F  +Y   
Sbjct: 512 AFYGPKIDITIA-------------------DALKREFQCATIQLDYQAPLNFKLEYMTH 552

Query: 298 MSATFKGAD---------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             A  K  +         G+   V +    IG+      ++     GK   WP  ++P +
Sbjct: 553 ERADVKDGETAKPGEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGK---WPFWISPRQ 609

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           I ++ +        D  E++   L     +V  D  G  +  +     L  +    +VG+
Sbjct: 610 ILIVPVMP---AVNDYVEELQTILRGDKLNVDIDISGNTMQKKIRNGQLAQYNFIFVVGA 666

Query: 409 KFVSDSKVEIKHRLTGIRE----DMSLEEVINYASHRFSNNR 446
                  V I++R     +     + LEE            R
Sbjct: 667 SEKESRSVNIRNRDDPATQKQGVMIPLEEAREKLRVLRKERR 708


>gi|255730209|ref|XP_002550029.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida
           tropicalis MYA-3404]
 gi|240131986|gb|EER31544.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida
           tropicalis MYA-3404]
          Length = 455

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/461 (15%), Positives = 153/461 (33%), Gaps = 63/461 (13%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              +  I++ +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P 
Sbjct: 30  TQSNHAISTKQLLYTTD---PVSPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVITPL 86

Query: 74  LQSADLWVESGRYDSYGKEMLRL------ADRN-----DKAMIYGPTHEEVMTDIFRSHI 122
           +    LW +SG +D+Y  +M ++       + +     +      P +      IF    
Sbjct: 87  IFKTKLWKKSGHWDNYKDDMFKVVGNDLSKEEHTDNIEEHEYGLKPMNCPSHCMIFAKFD 146

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP  +       R+E      G+ R R F   D + F  +               
Sbjct: 147 RSYQELPIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF-CSMSQIDQEIKNTLTLI 205

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G+  I     + P                  + +            +  +  +
Sbjct: 206 KDTYKVFGIDDIEFYLSTRP-----------------EEKYIGDIETWNKAEDQLKNVLN 248

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +            A      +  L D+  +  +V    ++    F    ++       
Sbjct: 249 STAGEGQWSIREGDGAFYGPKIDVLLKDAFGKKHQVGTIQLD----FQLPNRF----ELK 300

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG      + +     G++    A++   + GK   WP  + P +  +I I    +
Sbjct: 301 YVGEDGNRDHQPILVHRAVYGSLERFFAILLDHYQGK---WPFWINPRQAIIIPIN---E 354

Query: 360 VCRDACEKIYAR--------------LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
               A E +  +              L+     V  D  GE IG++   A   G+   ++
Sbjct: 355 SHVQAAESLQQKLGGDLLNSDESIAPLTSYNFYVDIDKRGETIGARTKEAIQKGYSYIIL 414

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G K +++    ++ R     ++M+ EE+ +         +
Sbjct: 415 IGDKEITNGTFAVRTRDDRKVKNMTSEEIYDLFVQLEKTYK 455


>gi|315930573|gb|EFV09608.1| Proline-tRNA ligase [Campylobacter jejuni subsp. jejuni 305]
          Length = 220

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 101/220 (45%), Positives = 142/220 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDD 220


>gi|259501582|ref|ZP_05744484.1| proline-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|259167100|gb|EEW51595.1| proline-tRNA ligase [Lactobacillus iners DSM 13335]
          Length = 581

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 132/225 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 16  MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 76  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 136 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++
Sbjct: 196 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNE 240



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 9/250 (3%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++A  G +G        V A   +  +        + +     + D      +I   + 
Sbjct: 341 IVKATKGGVG-------PVKAAYADYIIADETVKGLYNVVVGANESDYQYINANIDRDFK 393

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A     N    D +          IEVGHIF  GT Y+  M+A F   +GK   + 
Sbjct: 394 VNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPII 453

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+    S
Sbjct: 454 MGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFS 513

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MSL+ 
Sbjct: 514 DK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDS 571

Query: 434 VINYASHRFS 443
           +  Y S    
Sbjct: 572 LTEYISKELR 581


>gi|283955645|ref|ZP_06373138.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792870|gb|EFC31646.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 602

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|262202217|ref|YP_003273425.1| threonyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085564|gb|ACY21532.1| threonyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 691

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/456 (16%), Positives = 146/456 (32%), Gaps = 52/456 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +    +   G+  + P G      +    R    + G
Sbjct: 251 YLEMLAEAEKRDHRKLGSELDLFS-FPDEIGSGLPVFHPKGGVIRKELEDYSRLRHAQAG 309

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              +  P     DL+  SG  D Y   M      +++                 P +  +
Sbjct: 310 YEFVYTPHATKGDLFSLSGHLDWYADGMYPPMQLDEEVDADGTVRRPAIDYYLKPMNCPM 369

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E    
Sbjct: 370 HNLIFRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    A    T+V  +       
Sbjct: 429 EVRSLLQFVLDLLRDYGLDDFYLELSTRNPDKSIGSDEAWEEA----TEVLRA------A 478

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
             S   D  D               A  +   + +  D++    ++S   +++       
Sbjct: 479 ATSFGLDLVDDPGGA----------AFYAPKISVQARDAIGRTWQMSTIQVDMM----LP 524

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       + G DG K   V +     G++     V+   + G    W   ++P ++ 
Sbjct: 525 DRF----ELEYTGTDGAKHRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LSPVQVV 577

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +        D  + +   L   G     D   +++  +         P  ++ G + 
Sbjct: 578 GIPVA---DAFADHLQGVVDTLRAAGLRAEVDHSDDRMQKKIRNHTTGKVPFMLLAGERD 634

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V    V  + R       + + E +   +   ++ R
Sbjct: 635 VEAGAVSFRFRDGTQVNGVPVAEAVGIITDWVTSRR 670


>gi|149195433|ref|ZP_01872516.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134438|gb|EDM22931.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 613

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 154/456 (33%), Gaps = 57/456 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L      + + G+  WLP G     N+  ++     +
Sbjct: 200 QEYLKRLEEALKRDHRKLGKELELWL-FDEEVAPGMPIWLPRGAMLRANLEKLLFSAHIQ 258

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------KAMIYGPTHEEVMTDI 117
                +  P +  +++W  SG Y +Y + M      +D      +     P +      I
Sbjct: 259 REYEPVRGPEILRSEMWKISGHYYNYKENMYFTEIAHDDNQKQAEEYGIKPMNCLSHVKI 318

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   ++SY+ LP  F++     R E      G++R REF   DA+ F   PE  +    K
Sbjct: 319 FGHKVRSYKELPLRFFEFGTVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPEQIEEEVIK 377

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           +      I  R G K   M   + P   IG D   E    A          +  +D    
Sbjct: 378 VLDFVDSIMQRFGFKY-EMEISTRPEKSIGSDEIWEKATEALKNALNKLNREYGIDEGGG 436

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +      DI   ++I                               R  + G I      
Sbjct: 437 AFYGPKIDIKITDAIG------------------------------RKWQCGTI---QVD 463

Query: 294 YSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           ++LP     ++   + +    V +    IG+     A++   + G+   +   +AP K  
Sbjct: 464 FNLPERFDISYIDENNERKRPVMIHRAIIGSFERFIAILTEHYAGEFPTF---IAPIKAI 520

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            + I    +   D  ++I   L K           + +  +   A+       VI+G + 
Sbjct: 521 FVPI---SENHIDYAKEIQKELLKDDLKTEIYASNDSLNKRIRNAEKQKVAYVVIIGDEE 577

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V D  V I+ R    +  M   E +     + S  R
Sbjct: 578 VKDGTVAIRDRRKRTQYKMKKGEFVEMIK-KLSEVR 612


>gi|118462301|ref|YP_882672.1| threonyl-tRNA synthetase [Mycobacterium avium 104]
 gi|254775941|ref|ZP_05217457.1| threonyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|166225462|sp|A0QID4|SYT_MYCA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118163588|gb|ABK64485.1| threonyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 684

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 146/451 (32%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 254 IEEAQRRDHRKLGSELDLFS-FPDEIGSGLAVFHPRGGVVRRELEEYSRRKHIEAGYEFV 312

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  + T I
Sbjct: 313 NTPHITKAQLFHTSGHLDWYADGMFPPMHLDAEYDDDGTVRKPGQDYYLKPMNCPMHTLI 372

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R+R F M D++ F  T E        
Sbjct: 373 YRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDSHIF-CTREQLHGELAS 431

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S E    A T    V         P P  
Sbjct: 432 LLRFVLELLGDYGLTDFYLELSTKDPDKFVGSDEMWEQATTSLADVAAESGLELVPDPG- 490

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + +  D+L  + ++S   ++          + 
Sbjct: 491 -------------------GAAFYGPKISVQARDALGRSWQMSTIQVDF--------NFP 523

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  +DG +   V +     G++     ++   + G    W   +AP +   I +
Sbjct: 524 ERFELEYTASDGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQAVGIPV 580

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E + A+L   G  V  D   +++  +         P  ++ G + V+  
Sbjct: 581 A---DEHVPYLESVAAQLKSHGVRVEVDASDDRMAKKIVHHTAQKVPFMLLAGDRDVAAG 637

Query: 415 KVEIK--HRL--TGIREDMSLEEVINYASHR 441
            V  +   R    G+  D +++ ++ + + R
Sbjct: 638 AVSFRFGDRTQINGVPRDSAVDAIVKWIADR 668


>gi|261749266|ref|YP_003256951.1| threonyl-tRNA synthetase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497358|gb|ACX83808.1| threonyl-tRNA synthetase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 408

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 155/443 (34%), Gaps = 64/443 (14%)

Query: 17  DAEIASHKLMLRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      KL      I   +   G+  WLP G     N+   + + Q ++G   +  P +
Sbjct: 10  DHRKIGKKL---KFFIFSDRVGTGLPLWLPRGTIFRRNLEEFLTDIQKKSGYEMIMTPHI 66

Query: 75  QSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
               L+V SG +D YGK+  +      +++  +  P +     +++RS   SYR+LP  F
Sbjct: 67  GHKKLYVRSGHWDKYGKDSFKPIQTPHSEEEFLLKPMNCPHHCEVYRSQEWSYRDLPKRF 126

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +    +R E      G+ R R F   DA+ F  T +     + K+      +F RLG  
Sbjct: 127 AEFGTVYRYEQSGELHGLTRVRCFTQDDAHIF-CTYDQLLEEFKKVINLVFYVFRRLGFL 185

Query: 192 SIPMRAESGP-------IGGDLSHEFIVLA---DTGETQVFCSKDFMDFPIPSENTDFDD 241
              +R            IG D + E    A      E ++  S  + +        DF  
Sbjct: 186 EYTIRVSLRDPKKIHNYIGSDKNWEMAENAIIQAVKEEKLDASLHYGEAAFYGPKLDFL- 244

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
                                            K    R  ++G I      Y+LP    
Sbjct: 245 --------------------------------IKDSLDRNWQLGTI---QVDYNLPERFD 269

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +KG + + H  V +    +G++  + A++     G   +W   + P +  ++ I    
Sbjct: 270 LYYKGKNNERHRPVMIHRAPLGSLERLIAILIEHTKGNLPLW---LVPNQAVILPI---S 323

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +KI   +      VF D+  E+I  +   ++    P  +I+G K   +  + +
Sbjct: 324 DKYIIYAKKILNLMLNHNIRVFLDERNEKIDKKIRDSEENKIPYMIILGEKEEKNKMISL 383

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +    G     ++   I+     
Sbjct: 384 RRHGLGHIGIFTISNGIDAIFKE 406


>gi|254819890|ref|ZP_05224891.1| threonyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 691

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 147/451 (32%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 261 IEEAQRRDHRKLGTELDLFS-FPDEIGSGLAVFHPKGGIVRRELEEYSRRKHIAAGYEFV 319

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  ADL+  SG  D Y + M      +             +     P +  + T I
Sbjct: 320 NTPHITKADLFHTSGHLDWYAEGMYPPMHLDAEYDDDGTVRKPGQDYYLKPMNCPMHTLI 379

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FRS  +SYR LP   ++    +R E      G+ R+R F M DA+ F    E        
Sbjct: 380 FRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDAHIFCAR-EQLHAELAS 438

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL+   +   +  P     S      +      V         P P  
Sbjct: 439 LLRFILELLGDYGLEDFYLELSTKDPEKFVGSDAMWEESTKALADVAAESGLQLVPDPG- 497

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + +  D+L  + ++S   ++          + 
Sbjct: 498 -------------------GAAFYGPKISVQARDALGRSWQMSTIQVDF--------NFP 530

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG +   V +     G++     ++   + G    W   +AP ++  I +
Sbjct: 531 ERFELEYTAADGSRQRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQVVGIPV 587

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D    + A+L   G  V  D   +++  +         P  ++ G + V+  
Sbjct: 588 ADD---HVDYLNDVAAQLRSHGVRVEVDASDDRMAKKIVNHTNQRVPFMLLAGDRDVAAG 644

Query: 415 KVEIK--HRL--TGIREDMSLEEVINYASHR 441
            V  +   R    G+  D +++ ++ + + R
Sbjct: 645 AVSFRFGDRTQINGVPRDGAVDAIVKWIADR 675


>gi|88597312|ref|ZP_01100547.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561885|ref|YP_002343664.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|73919778|sp|Q9PIS3|SYT_CAMJE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88190373|gb|EAQ94347.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359591|emb|CAL34375.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925497|gb|ADC27849.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928137|gb|EFV07455.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 602

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|32140557|dbj|BAC78195.1| prolyl-tRNA synthetase [Raphanus sativus]
          Length = 544

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 164/464 (35%), Gaps = 90/464 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +    AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 70  RSQDFNAWYLDVIASAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 119

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 120 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTVGGGHELEEKLVVRPTSETIVNHM 179

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP    Q     R E+R     +R+ EFL ++ ++   TPE ++    +M
Sbjct: 180 FTQWIHSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATPEEAEKEAKQM 238

Query: 178 FVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 I+ R   +  SIP+ A     G     E    ADT             + I + 
Sbjct: 239 IE----IYTRFAFEQTSIPVIA-----GRKSKLETFAGADTT------------YTIEAM 277

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D                                         + ++ G     G  +S
Sbjct: 278 MGD----------------------------------------RKALQAGTSHNLGQNFS 297

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  +G+  +V   S+ + + R V  +I +  D  G++ P  +AP ++ ++ I 
Sbjct: 298 RAFGTQFQDENGERQHVWQTSWAV-STRFVGGIIMTHGDDTGLMLPPKIAPIQVVIVPIW 356

Query: 356 AHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFV 411
             D        A   +   L   G  V  DD  E+  G +F   ++ G P+++ +G + V
Sbjct: 357 KKDTEKTQVLSAASSVKEVLQTAGVRVKLDDTTERTAGWKFNFWEMKGVPIRIEIGPRDV 416

Query: 412 SDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPVL 449
           S + V +  R      G    +S+E   ++ Y   +    +  L
Sbjct: 417 SSNCVVVSRRDIPGKAGKVFGISMEPSTLVAYVKEKLDEIQSSL 460


>gi|257066241|ref|YP_003152497.1| prolyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798121|gb|ACV28776.1| prolyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 572

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 155/246 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E+P DAE ASHK + R   I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MRLSKYYMPTLREDPVDAETASHKFLTRGAFIRKQASGVYSFLPLGKKVINKIEAIVREA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MENHDSIEVSTSILQAREIWEASGRWETFGPEMFKLKDRHDREYCLGPTAEEAFTALVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD   EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDADIEGLEISYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F ++GL    +  +SG +GG  SHEFI L++TGE  +  + D        +     
Sbjct: 181 YVEAFDKMGLDYKIVEGDSGTMGGKKSHEFIALSETGEGVILYTDDSDYAATDEKARFKM 240

Query: 241 DIISLN 246
           D +  +
Sbjct: 241 DFVKED 246



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/247 (34%), Positives = 118/247 (47%), Gaps = 11/247 (4%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPIG  L  E  VL D   T++       +  + +  TD+  I +              
Sbjct: 333 TGPIG--LKEEVRVLIDESLTKI------NNLTVGANKTDYHYINANFKRDFDGEIVEDL 384

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +    +  +D     K  +ARGIEVG+IF  GTKYS  + A F   +GK     MGSYG
Sbjct: 385 LTAKEGDMAYDGSGMLK--AARGIEVGNIFQLGTKYSESLEAYFLDENGKQKPFIMGSYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R V+A++E  HD KGI+WP SVAPF+  +  I  +    ++  EKIY RL +   D
Sbjct: 443 IGISRSVSAIVEQYHDDKGIVWPTSVAPFEAIVTIININKDEQKELGEKIYQRLREERID 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +F   DL+G P ++ VG K  +D  VE   R     E +S  E I   
Sbjct: 503 VILDDRKERAGVKFNDRDLIGIPYRITVG-KDAADDIVEYSTRKDMENEKISSSEAIEKI 561

Query: 439 SHRFSNN 445
                 +
Sbjct: 562 VDSIKKD 568


>gi|188526926|ref|YP_001909613.1| threonyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|238691884|sp|B2URV1|SYT_HELPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188143166|gb|ACD47583.1| threonyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 612

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 156/440 (35%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   R+      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRNHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENMY-FTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F  + E  +   + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CSFEQIQSEVSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     M   + P       +    A     +    +  +D+ I      F     
Sbjct: 384 MQAFDFSY-EMELSTRPAKSIGDDKVWEKATNALKEALK-EHRIDYKIDEGGGAFYGPKI 441

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                    D+L    +     +++        ++ L  +     
Sbjct: 442 DIKIT-------------------DALKRKWQCGTIQVDM----NLPERFKLAFTNEH-- 476

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +  +  V +    +G+     A++     G    +   VAP +I+LI I     V    
Sbjct: 477 -NHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINEEHHV---F 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R   
Sbjct: 530 ALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQ 589

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  M L+E +N    +   
Sbjct: 590 AQYKMPLKEFLNMVESKMQE 609


>gi|86153772|ref|ZP_01071975.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842733|gb|EAQ59945.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 602

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALDKQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|78776267|ref|YP_392582.1| threonyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|78496807|gb|ABB43347.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 602

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 163/451 (36%), Gaps = 57/451 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREE 60
           K +L ++     +AE   H+ +     +     +   G   WLP G +    + +++ + 
Sbjct: 195 KSYLDMM----AEAEKRDHRKLGAEMKMFTFREEVGAGFPIWLPAGGRLRARLESLLFKA 250

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P +  +DLW  SG Y +YG+ M    + ++      P +      I+  
Sbjct: 251 HRKRGYEPVRGPEMLRSDLWKTSGHYQNYGENMY-FTNIDEIEFGVKPMNCVGHIKIYEE 309

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP  +++  +  R E+     G+ R REF   DA+ F    +  +    ++  
Sbjct: 310 DLHSYRDLPLKYFEYGVVHRHEMTGALHGLFRVREFTQDDAHIF-CRADQIEEQIIEVVD 368

Query: 180 SYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +I          M   + P   +G D   E    A             +D    +  
Sbjct: 369 FVDKIMSTFEFNY-KMMLSTKPAKAVGDDSVWEVSTQALKNAMDKNGLVYEIDEGGGAFY 427

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               DI   ++I                               R  + G I      ++L
Sbjct: 428 GPKIDIKITDAIG------------------------------REWQCGTI---QLDFNL 454

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P      + G +  K   V +    +G+      ++   + G+    P  +AP +++++ 
Sbjct: 455 PSRFELEYNGENNDKIQPVMIHRAILGSFERFIGILTEHYAGEF---PMFIAPTQVAIVP 511

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D  +++  +L  +G D       + +  +   A+    P+ V++G + V+ 
Sbjct: 512 IAP---THNDYAKELSDKLMDLGADSEIYSKNDSLNKRVRTAEKTRVPMLVVIGDEEVAS 568

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V I+ R T  + ++S  E ++    + + 
Sbjct: 569 RTVAIRDRRTREQYNLSESEFLSLIQTKINE 599


>gi|170781142|ref|YP_001709474.1| threonyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155710|emb|CAQ00831.1| threonine-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 684

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 143/456 (31%), Gaps = 51/456 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R      G   
Sbjct: 260 RIEEALKRDHRRLGAELDLFS-FPDEIGSGLAVFHPKGGIIRREMEDYSRRRHETAGYEF 318

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD----RNDK--------AMIYGPTHEEVMTD 116
           +  P +  ++L+  SG  D Y   M         RND+             P +  +   
Sbjct: 319 VYSPHITKSNLFETSGHLDFYKDGMFPAMHLDEARNDEGEITRQGADYYLKPMNCPMHVL 378

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+RS  +SYR LP   ++    +R+E      G+ R R     DA+ F  T E       
Sbjct: 379 IYRSRQRSYRELPLRLFEFGTVYRNEKSGVIHGLTRVRGMTQDDAHIF-TTRERMADELK 437

Query: 176 KMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 L +    GL    +   +  P     S E    A     QV         P P+
Sbjct: 438 GTLEFVLSLLRDYGLDDFYLELSTKDPEKFVGSDEVWEEATETLRQVAVDTGLELVPDPA 497

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + +  D++    ++S   ++      FG +Y
Sbjct: 498 --------------------GAAFYGPKISVQARDAIGRTWQMSTIQLDFNLPERFGLEY 537

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +          DG +   V +     G++     V+   + G   +W   ++P ++  I 
Sbjct: 538 T--------ANDGTRKQPVMIHRALFGSIERFFGVLTEHYAGAFPVW---LSPVQVVGIP 586

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +   +    +  RL   G  V  D   +++  +         P Q+I G    + 
Sbjct: 587 VA---EDYEEYLGGVLDRLRAEGVRVQLDTSDDRMPKKIRTHTKARVPYQLIAGEDDRAA 643

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             V  + R       + + E +   +   +    V+
Sbjct: 644 GSVSFRFRDGTQVNGVPVAEAVERITGAIARREQVV 679


>gi|313681998|ref|YP_004059736.1| prolyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313154858|gb|ADR33536.1| prolyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 567

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 100/229 (43%), Positives = 142/229 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P  +E P+DA++ SH  + R G + Q + G+Y++LP+G++ L  +  II EE
Sbjct: 1   MRFSKAYIPTTKEAPKDAQLPSHIYLSRAGFVTQVAAGLYNFLPMGKRVLRKIETIINEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+ +  +  A+LW ESGR + +GKE+LR  DR D   + GPTHEE+M +I R+
Sbjct: 61  MAACDAQEVDLSFVTPAELWEESGRIEKFGKELLRFRDRKDNLFVLGPTHEEMMVNIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI+ KFRDE RPRFG+MR REF+MKD YSF  + E     ++ M  +
Sbjct: 121 RVTSYKQLPLNLYQIKTKFRDEARPRFGLMRGREFVMKDGYSFHSSNEDLDREFDAMEAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y RI  RLGL+   + A+SG IGG  S E +VLA +GE  +        
Sbjct: 181 YKRILERLGLEFRIVEADSGAIGGTGSKELMVLAGSGEDTLAICDSCEY 229



 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 3/190 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
              A  +D+ + +  D  P         +GIEVGHIF  GT YS P+ A F   +G+   
Sbjct: 377 MNEAHFADLVSVQEGDGCPHCGGKILHTKGIEVGHIFKLGTVYSAPLKAEFLDENGRSQP 436

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YG+G  R+VAAVIE  HD KG IW  + AP+ ++++     ++      E++YA 
Sbjct: 437 FIMGTYGMGVSRLVAAVIEQHHDEKGCIWTHATAPYLVNVMVSNIKEESHMAYAEELYAS 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +   DD  E+ G + + A+L+GFP  VIVG K + +  V+I  R T     +  
Sbjct: 497 LQSRGIETMLDDRKERFGFKMSDAELIGFPYTVIVG-KELENGSVQIMVRATREMITVDA 555

Query: 432 EEVINYASHR 441
            +V++     
Sbjct: 556 ADVLSKIEEL 565


>gi|42527722|ref|NP_972820.1| prolyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|81831353|sp|Q73KJ8|SYP_TREDE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41818550|gb|AAS12739.1| prolyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 595

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 96/251 (38%), Positives = 148/251 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++ ++P L+E P +A + SHKL+LR GMI   + G++++LPLG KA   V  IIREE
Sbjct: 1   MKMTQMYMPTLREIPNEAVVESHKLLLRAGMIRNLANGLFAYLPLGLKAFRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E   P +   ++W ESGR+DS G E+LR+ +R ++ ++  PT EE  T + ++
Sbjct: 61  MDAIGCLEFKPPVIVPGEIWQESGRWDSMGPELLRIKNRLNQELVVSPTAEEAFTALLKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+N P   YQI  K+RDE+RPR+G+MR+REF MKDAYSF    +    +Y     +
Sbjct: 121 ELSSYKNYPLLTYQINTKYRDEIRPRYGLMRTREFTMKDAYSFHTNDKSLDEAYLSFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R GL  I ++A+SG +GG  S EF+V +  G+  +             +     
Sbjct: 181 YIKIFKRCGLTVIGVKADSGAMGGSGSQEFMVESSVGDDTLLLCPSCGYAANEEKAACAP 240

Query: 241 DIISLNSIVEQ 251
           D    N  + Q
Sbjct: 241 DKEQGNGNMPQ 251



 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 28/262 (10%)

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +GLK+IP+ A+   +   L H+ +  A   +  +   +   DF  P+   D   + + + 
Sbjct: 361 VGLKNIPVIADESVM---LMHDAVTGALKKDKHLLHVEPSRDFT-PAHVFDLRTVRAGDK 416

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                TA Y                     + +G E+GHIF  G KY+  M+ T+   +G
Sbjct: 417 CAVCGTALY---------------------TKKGNELGHIFKLGYKYTKAMNMTYLDENG 455

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K  +  MG YGIG  R+ A+++E  HD  GIIWP S+APF+++++ IK   ++ ++  ++
Sbjct: 456 KQQHPSMGCYGIGLDRLTASIVEEHHDEDGIIWPMSIAPFQVAIVPIKYEGEMQKE-ADR 514

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y    K G +   DD  E+ G +F   DL+G P++++VG K + +  +E K R      
Sbjct: 515 LYEECKKRGIEALLDDRKERTGVKFKDMDLIGIPIRLVVGEKNLPN--IEFKLRKAVESS 572

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
            +  ++V++            L
Sbjct: 573 LVDKDKVVDLVEKTVKEELAKL 594


>gi|194477323|ref|YP_002049502.1| prolyl-tRNA synthetase [Paulinella chromatophora]
 gi|171192330|gb|ACB43292.1| prolyl-tRNA synthetase [Paulinella chromatophora]
          Length = 604

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 151/237 (63%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   L  L+++P +AE+ SHKL+LR G I + + GIY++LPL  + L  +++ +REE
Sbjct: 1   MRVSHLMLVTLRDDPAEAEVISHKLLLRAGYIRRVTIGIYAYLPLLWRVLKKISSCVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
               GAIE+ +P LQ AD+W  S R+  Y +    M  L DR  + +  GPTHEEV+T++
Sbjct: 61  MTSAGAIELLMPQLQPADIWQLSKRWAGYTQGEGIMFNLKDRQGRELALGPTHEEVVTNL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
             + IKSYR LP T YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  +    K SY++M
Sbjct: 121 VDNLIKSYRQLPCTLYQIQTKFRDEIRPRFGLMRSREFVMKDAYSFHSSEIDLKVSYDRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            + Y  IF R GL  + + A+SG IGG  S EF+V A+ GE  +  S+D        
Sbjct: 181 DLGYRNIFRRCGLNVVAVEADSGSIGGAASQEFMVTAEAGEDLILISEDKSYAANQE 237



 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 1/178 (0%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                 P       RGIEVGHIF  G KYS+ ++A +    G      MG YGIG  R+ 
Sbjct: 419 DQCIHNPIYTLTENRGIEVGHIFRLGHKYSIALNANYTNEIGNQEPFWMGCYGIGISRLS 478

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A +E  HD KGI WP S+APF++ ++ +   D++ R   E +Y+ +     DV  DD  
Sbjct: 479 QAAVEQHHDQKGICWPLSIAPFEVIIVIVSIQDEIQRTLGEALYSIMKAARVDVLIDDRQ 538

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++ G +F  ADL+G P Q+++G +   ++++E+  R+T   E +    ++ Y      
Sbjct: 539 DRAGVKFKDADLIGIPWQIVIG-RGAINNQIELVERITSRSEQLDAGYLVKYFLQYLE 595


>gi|57237210|ref|YP_178222.1| threonyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|73919779|sp|Q5HWW3|SYT_CAMJR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57166014|gb|AAW34793.1| threonyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|315057643|gb|ADT71972.1| Threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 602

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|148273002|ref|YP_001222563.1| threonyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830932|emb|CAN01876.1| thrS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 684

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 143/456 (31%), Gaps = 51/456 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R      G   
Sbjct: 260 RIEEALKRDHRRLGAELDLFS-FPDEIGSGLAVFHPKGGIIRREMEDYSRRRHETAGYEF 318

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD----RNDK--------AMIYGPTHEEVMTD 116
           +  P +  ++L+  SG  D Y   M         RND+             P +  +   
Sbjct: 319 VYSPHITKSNLFETSGHLDFYKDGMFPAMHLDEARNDEGEITRQGADYYLKPMNCPMHVL 378

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+RS  +SYR LP   ++    +R+E      G+ R R     DA+ F  T E       
Sbjct: 379 IYRSRQRSYRELPLRLFEFGTVYRNEKSGVIHGLTRVRGMTQDDAHIF-TTRERMADELK 437

Query: 176 KMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 L +    GL    +   +  P     S E    A     QV         P P+
Sbjct: 438 GTLEFVLSLLRDYGLDDFYLELSTKDPEKFVGSDEVWEEATETLRQVAVDTGLELVPDPA 497

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + +  D++    ++S   ++      FG +Y
Sbjct: 498 --------------------GAAFYGPKISVQARDAIGRTWQMSTIQLDFNLPERFGLEY 537

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +          DG +   V +     G++     V+   + G   +W   ++P ++  I 
Sbjct: 538 T--------ANDGTRKQPVMIHRALFGSIERFFGVLTEHYAGAFPVW---LSPVQVVGIP 586

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +   +    +  RL   G  V  D   +++  +         P Q+I G    + 
Sbjct: 587 VA---EDYEEYLGGVLDRLRAEGVRVQLDTSDDRMPKKIRTHTKARVPYQLIAGEDDRAA 643

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             V  + R       + + E +   +   +    V+
Sbjct: 644 GSVSFRFRDGTQVNGVPVAEAVERITGAIARREQVV 679


>gi|325475063|gb|EGC78249.1| prolyl-tRNA synthetase [Treponema denticola F0402]
          Length = 595

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 96/251 (38%), Positives = 148/251 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++ ++P L+E P +A + SHKL+LR GMI   + G++++LPLG KA   V  IIREE
Sbjct: 1   MKMTQMYMPTLREIPNEAVVESHKLLLRAGMIRNLANGLFAYLPLGLKAFRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E   P +   ++W ESGR+DS G E+LR+ +R ++ ++  PT EE  T + ++
Sbjct: 61  MDAIGCLEFKPPVIVPGEIWQESGRWDSMGPELLRIKNRLNQELVVSPTAEEAFTALLKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+N P   YQI  K+RDE+RPR+G+MR+REF MKDAYSF    +    +Y     +
Sbjct: 121 ELSSYKNYPLLTYQINTKYRDEIRPRYGLMRTREFTMKDAYSFHTNDKSLDEAYLSFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R GL  I ++A+SG +GG  S EF+V +  G+  +             +     
Sbjct: 181 YIKIFKRCGLTVIGVKADSGAMGGSGSQEFMVESSVGDDTLLLCPSCGYAANEEKAACAP 240

Query: 241 DIISLNSIVEQ 251
           D    N  + Q
Sbjct: 241 DKEQGNGNMPQ 251



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 125/262 (47%), Gaps = 28/262 (10%)

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +GLK+IP+ A+   +   L H+ +  A   +  +   +   DF  P+   D   + + + 
Sbjct: 361 VGLKNIPVIADESVM---LMHDAVTGALKKDKHLLHVESSRDFT-PAHVFDLRTVRAGDK 416

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                TA Y                     + +G E+GHIF  G KY+  M+ T+   +G
Sbjct: 417 CAVCGTALY---------------------TKKGNELGHIFKLGYKYTKAMNMTYLDENG 455

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K  +  MG YGIG  R+ A+++E  HD  GIIWP S+APF+++++ IK   ++ ++  ++
Sbjct: 456 KQQHPSMGCYGIGLDRLTASIVEEHHDEDGIIWPMSIAPFQVAIVPIKYEGEMQKE-ADR 514

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y    K G +   DD  E+ G +F   DL+G P++++VG K + +  +E K R      
Sbjct: 515 LYEECKKRGIEALLDDRKERTGVKFKDMDLIGIPIRLVVGEKNLPN--IEFKLRKAVESS 572

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
            +   +V++            L
Sbjct: 573 LVDKNKVVDLVEKTVKEELAKL 594


>gi|326792022|ref|YP_004309843.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542786|gb|ADZ84645.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 657

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 164/442 (37%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +A+   H  + R   +     +  +G+   +P G + +  +   + +E+ + G + 
Sbjct: 233 EALEEAKKRDHNKLGRELKLFTTDEKVGQGLPLLMPKGARIVQTLQRFVEDEEEKRGYVL 292

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
              P +  +DL+  SG +D Y   M  L D   + +     P        ++ +   SYR
Sbjct: 293 TKTPLMAKSDLYKMSGHWDHYKDGMFVLGDEEKDKEVFALRPMTCPFQFTVYNAEQHSYR 352

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +      + 
Sbjct: 353 DLPIRYGETSTLFRNESSGEMHGLIRVRQFTISEGHLV-CTPEQLEDEFRGVIELINYMM 411

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             LG+++            D+S+ F    D   T  + +             +  D + +
Sbjct: 412 ATLGIEN------------DISYRFS-KWDPANTGKYINDPEAWERTEGLMRNILDHLQI 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N   E+     A      + +  +   +   +    I+    F  G +    +  T+  A
Sbjct: 459 N--YEEAVGEAAFYGPKLDIQFKNVHGKEDTIITVQID----FALGER----LGMTYIDA 508

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG K H + +    IG      A++   + G+   W   +AP  + ++ +        D 
Sbjct: 509 DGEKKHPLIIHRTSIGCYERTLAMLIEKYAGQFPTW---LAPVAVKVLPL---SDKYADY 562

Query: 365 CEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++       G   V  D   E+IG +   A +   P  V+VG++ + +  V ++ R  
Sbjct: 563 AAEVVKAFKDHGILKVEADYRTEKIGYKIREARMERIPYIVVVGAEEMENKTVSVRSRQK 622

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SLE  +N         
Sbjct: 623 GDEGVQSLESFVNRVDEEIKTK 644


>gi|62078811|ref|NP_001014062.1| threonyl-tRNA synthetase, mitochondrial precursor [Rattus
           norvegicus]
 gi|81884372|sp|Q68FW7|SYTM_RAT RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|51259375|gb|AAH79154.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Rattus
           norvegicus]
          Length = 723

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 148/463 (31%), Gaps = 58/463 (12%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 291 LLRNWEARREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRIYNALVAFIRAEYAR 350

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN----------------DKAMIYG 107
            G  E+  PTL S  LW +SG ++ Y   M  L                       +   
Sbjct: 351 RGFSEVKTPTLFSTKLWEQSGHWEHYRAHMFSLKPPGTDGVDSSQSGHPARCPKDTLALK 410

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP       +  R E      G+ R   F   DA+ F   
Sbjct: 411 PMNCPAHCLMFAHRPRSWRELPVRLADFGVLHRAEASGSLGGLTRLWRFQQDDAHIFCA- 469

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P   +            ++  LG     +   + P G          A+    Q      
Sbjct: 470 PSQLEAEIRGCLDFLRSVYSVLGFSF-HLALSTRPPGFLGEPHLWDQAEKVLQQALEEFG 528

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                 P +                     A      +  L D+L    +     ++   
Sbjct: 529 EPWNLNPGDG--------------------AFYGPKIDVHLHDALGRPHQCGTIQLD--- 565

Query: 287 IFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G     V +    +G++  +  V+  S  G    WP  ++
Sbjct: 566 -FQLPLRF----DLQYKGPAGAPECPVLIHRAVLGSVERLLGVLAESCGG---RWPLWLS 617

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           PF++ +I ++   +   D   ++   L   G     D D G  +  +   A L  +  Q 
Sbjct: 618 PFQVVVIPVRTEQE---DYARQVQQCLQAAGLVSDLDADCGLTLSRRVRRAQLAHYNFQF 674

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +VG +  S   V ++ R      +  L E +           P
Sbjct: 675 VVGQREQSQMSVNVRTRDNRQLGERGLAESVQRLLELQDARVP 717


>gi|41408814|ref|NP_961650.1| threonyl-tRNA synthetase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|73919807|sp|Q73WE4|SYT_MYCPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41397173|gb|AAS05033.1| ThrS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 684

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 145/451 (32%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 254 IEEAQRRDHRKLGSELDLFS-FPDEIGSGLAVFHPRGGVVRRELEEYSRRKHIEAGYEFV 312

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  + T I
Sbjct: 313 NTPHITKAQLFHTSGHLDWYADGMFPPMHLDAEYDDDGTVRKPGQDYYLKPMNCPMHTLI 372

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R+R F M D++ F  T E        
Sbjct: 373 YRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDSHIF-CTREQLHGELAS 431

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S E    A T    V         P P  
Sbjct: 432 LLRFVLELLGDYGLTDFYLELSTKDPDKFVGSDEVWEQATTSLADVAAESGLELVPDPG- 490

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + +  D+L  + ++S   ++          + 
Sbjct: 491 -------------------GAAFYGPKISVQARDALGRSWQMSTIQVDF--------NFP 523

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  +DG     V +     G++     ++   + G    W   +AP +   I +
Sbjct: 524 ERFELEYTASDGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQAVGIPV 580

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E + A+L   G  V  D   +++  +         P  ++ G + V+  
Sbjct: 581 A---DEHVPYLESVAAQLKSYGVRVEVDASDDRMAKKIVHHTAQKVPFMLLAGDRDVAAG 637

Query: 415 KVEIK--HRL--TGIREDMSLEEVINYASHR 441
            V  +   R    G+  D +++ ++ + + R
Sbjct: 638 AVSFRFGDRTQINGVPRDSAVDAIVKWIADR 668


>gi|224373363|ref|YP_002607735.1| threonyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|254783530|sp|B9L5U7|SYT_NAUPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|223589770|gb|ACM93506.1| threonyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 611

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 145/448 (32%), Gaps = 50/448 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L      +   G+  WLP G     N+  ++     R
Sbjct: 198 QEYLKMLEEAAKRDHRKLGTELEL-WMFDEEVGAGMPIWLPNGALLRGNLEKLLYSAHIR 256

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------AMIYGPTHEEVMTDI 117
              + +  P L  + +W  SG Y +Y + M      ND            P +      I
Sbjct: 257 REYLPVRGPELLRSHMWKISGHYYNYKENMYFTEIENDDPEKPADEYGIKPMNCLAHVKI 316

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   ++SY+ LP   ++     R E      G++R REF   DA+ F   P+  +    K
Sbjct: 317 FGHKVRSYKELPLRLFEFGTVHRHEKSGVLHGLLRVREFTQDDAHIF-CRPDQIEEEVIK 375

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +      I  R G     M   + P     S E    A     +   S +          
Sbjct: 376 VLEFVDSIMERFGFNY-EMEISTRPEKSIGSDEIWEKATESLKKALNSLNREYGIDEGGG 434

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I +                                  R  + G I      ++L
Sbjct: 435 AFYGPKIDIKITDA---------------------------IGRKWQCGTI---QVDFNL 464

Query: 297 P--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P     T+   + +    V +    IG+     A++   + G+   +   +AP K   + 
Sbjct: 465 PERFDITYVDENNERVRPVMIHRAIIGSFERFIAILTEHYAGEFPTF---IAPIKAIFVP 521

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +   +  +K+   L +   +       + +  +   A+       VI+G + V  
Sbjct: 522 IA---ESHVEYAKKLQKELLEADINTEIFASNDSLNKRIRNAEKRRVGYVVIIGDEEVET 578

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V I+ R    +  M+  E +    + 
Sbjct: 579 GTVAIRDRKKREQYKMTKGEFVEMIKNL 606


>gi|83319726|ref|YP_424209.1| threonyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283612|gb|ABC01544.1| threonyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 639

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 158/436 (36%), Gaps = 37/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  + + +L +  G       G+  WLP G    + +   +R+++     I +  P + 
Sbjct: 236 RDHRLINKRLNIF-GFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIG 294

Query: 76  SADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+  SG +D YG++M +  +     D+  I  P +      +++   +SYR+LP   
Sbjct: 295 TVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRI 354

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  ++ R E      G+ R R   + D++ F +  +  +  +   +     +     ++
Sbjct: 355 CEHAIQHRFESSGSLTGLERVRGMKLTDSHIF-VRSDQIEDEFRSTYKLISEVLKTFNIQ 413

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +          +             + +      D    S      D+         
Sbjct: 414 IDYLSLSLRDPNDKV-------------KFYKDDLMWDKAESSLEKVLIDLGLKYEKRIG 460

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D+  +    +      VS   ++    F    K+      T+   D K   
Sbjct: 461 DAAFYGPKLDIQIKT---AQNHEITVSTIQLD----FLMPNKF----DLTYIDKDQKLVR 509

Query: 312 VQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             M   G IG      A +     G   + P  +AP ++ +I I    +   +    I+ 
Sbjct: 510 PIMIHRGLIGTYERFIATLLEQTKG---VLPLWLAPKQVEIIPI---SESNLEYANLIHQ 563

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  +  +S
Sbjct: 564 KLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVS 623

Query: 431 LEEVINYASHRFSNNR 446
           ++E I+    + ++ +
Sbjct: 624 IQEFIDMLKQQINDKK 639


>gi|67538984|ref|XP_663266.1| hypothetical protein AN5662.2 [Aspergillus nidulans FGSC A4]
 gi|40743565|gb|EAA62755.1| hypothetical protein AN5662.2 [Aspergillus nidulans FGSC A4]
 gi|259484865|tpe|CBF81451.1| TPA: threonyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_4G13700) [Aspergillus nidulans FGSC A4]
          Length = 722

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 147/438 (33%), Gaps = 22/438 (5%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H  + +          S G    LP G +  + + +++R E  + G  E+  P 
Sbjct: 294 EAEKRNHLRIAKEQELFFFDDVSPGCPFLLPNGVRIFNALQSLLRSEYRKRGYQEVQTPN 353

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    +W  SG +  Y  +M +L D   +     P +      +F    +SYR LP    
Sbjct: 354 MYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGHRERSYRELPLRIA 412

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E      G+ R R+F   D + F  T +  +     +F     I+   G   
Sbjct: 413 DFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTHDQIESEIEGLFDFLQSIYGLFGFTF 471

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++  + P       E    A+    +        D+ I   +  F       +I +  
Sbjct: 472 -KLKLSTRPEKYLGELETWNYAEEQLKKAMTKFKGDDWTIDEGDGAFYGPKIDITIADAL 530

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              +        +  + +    K     G +         K + P   + + A G+   V
Sbjct: 531 KREFQC---ATIQLDYQAPLNFKLEYMTGEKTQATQEEAKKEADP--KSNEPAPGRARPV 585

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    IG+      +I     GK   WP  ++P ++ ++ +        D   ++   L
Sbjct: 586 VIHRAIIGSFERFLGIITEHFGGK---WPFWISPRQVLIVPVMP---AVNDYAREVQKIL 639

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED---- 428
                 V  D  G  +  +     L  +   ++VG++      V I++R     +     
Sbjct: 640 QNDKLYVDVDVTGNTLQKKIRTGQLAQYNFILVVGAEEKESRSVNIRNRDDTSSQSRGVV 699

Query: 429 MSLEEVINYASHRFSNNR 446
           + LEE            R
Sbjct: 700 VPLEEARQKFRALRKERR 717


>gi|126313772|ref|XP_001370758.1| PREDICTED: similar to Threonyl-tRNA synthetase-like 1 [Monodelphis
           domestica]
          Length = 717

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 150/462 (32%), Gaps = 58/462 (12%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + +       H+ S G   +LP G +  + +   IR+E  R 
Sbjct: 286 LRAWEKQREEAAARDHRRIGKDQELFFFHELSPGSCFFLPRGTRVYNALMTFIRDEYARR 345

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMI--------------YGP 108
           G  E+  PTL S  LW +SG +  Y  +M   R  D +  A                  P
Sbjct: 346 GFSEVRTPTLFSTKLWEQSGHWKHYSGDMFVLRPPDPDGPADCQNNCSTNHPQSMLALKP 405

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      IF    +S+R LP          R E      G+ R R F   DA+ F    
Sbjct: 406 MNCPAHCLIFAHRPRSWRELPLRLADFGALHRTEASGGLGGLTRLRRFQQDDAHIFCA-Q 464

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  +            ++   G     +   + P                 +        
Sbjct: 465 DQLESEIRGCLDFLRSVYTVFGFSFHLV-LSTRP-----------------SSFLGESFL 506

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            D          D+      +     A Y    DVH +   D+L    +     ++    
Sbjct: 507 WDQAEQILQQALDEFGEPWDLNPGDGAFYGPKIDVHIQ---DALGRPHQCGTIQLD---- 559

Query: 288 FYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       + G  G  +  V +    +G++  +  V+  ++ GK   WP  ++P
Sbjct: 560 FQLPLRF----GLQYMGQAGVLERPVLIHRAVLGSVERMLGVLTENYGGK---WPLWLSP 612

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVI 405
            +  +I + A  +       ++   L   G     D D    +  +   A L  +  Q +
Sbjct: 613 LQAMVIPVGAEQEG---YAREVQEALQAAGLAGDLDKDPSLTLSRRVRRAQLSQYNFQFV 669

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           VG +  S   V I+ R +G   +  + E +           P
Sbjct: 670 VGPREQSRGTVNIRTRDSGQLGERPVAEAVVRLRELRDARVP 711


>gi|229828744|ref|ZP_04454813.1| hypothetical protein GCWU000342_00810 [Shuttleworthia satelles DSM
           14600]
 gi|229793338|gb|EEP29452.1| hypothetical protein GCWU000342_00810 [Shuttleworthia satelles DSM
           14600]
          Length = 597

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 158/456 (34%), Gaps = 51/456 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L   Q   R+A+   HK +   L   M H+ + G+  WLP G K  + +    R  
Sbjct: 165 SKEELKEHQRLLREAKERDHKKLGPALELFMFHESAPGMPYWLPRGWKLFNALLDYWRSV 224

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY---GPTHEEVMTDI 117
             R   +E++ P + +  LW  SG +  Y + M  +    +    Y    P +       
Sbjct: 225 HERHNYLEIAAPVINNQKLWATSGHWGHYKENMFIIPGEKEDESDYYAAKPMNCPNAIMF 284

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +++ ++SYR+LPF   Q+ +  R E      G+ R + F   DA+   +T +        
Sbjct: 285 YKNGLRSYRDLPFRVSQVDVIHRKEKSGELNGLFRVQMFRQDDAHIL-VTEDQIASEIAD 343

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +      I+   GL        + P                    F           +E 
Sbjct: 344 IMSIADEIYSTFGLSFR-AELSTRP------------------DDFMGDIATWDKAEAEL 384

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +  D +      +      A      + ++ D+L    ++    ++      FG KY+ 
Sbjct: 385 REILDNMYGEGNYDVNEGDGAFYGPKIDLQMKDALGREWQMGTIQLDFQLPLNFGLKYA- 443

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                    DG +   V +     G+M     ++  +  G    W   V+P+++ ++ I+
Sbjct: 444 -------AQDGSEKQPVLIHRAIFGSMERFIGILIENFKGSFPFW---VSPYQVGIVPIR 493

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     EKI   L  +G  V  D   + +  +      L  P  +++G K V +  
Sbjct: 494 TS---HNAYAEKIQEELRSMGIRVEADYADKNMNEKIKRFRTLRDPYTLVIGDKEVENGT 550

Query: 416 VEIKHRLTGIR-EDMSLEEV--------INYASHRF 442
           V +  R    +  D+ L +         + +     
Sbjct: 551 VSVTVRGQKQQIHDLPLADFCAMCRKLQVEHLKDLL 586


>gi|331703296|ref|YP_004399983.1| Threonine tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801851|emb|CBW54004.1| Threonine tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 639

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 157/439 (35%), Gaps = 40/439 (9%)

Query: 17  DAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D     H+L+ +T    G       G+  WLP G    + +   +R+++     I +  P
Sbjct: 232 DRRSRDHRLINKTLNIFGFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETP 291

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + + +L+  SG +D YG++M +  +     D+  I  P +      +++   +SYR+LP
Sbjct: 292 PIGTVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLP 351

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +  ++ R E      G+ R R   + D++ F +  +  +  +   +     +    
Sbjct: 352 LRICEHAIQHRFESSGSLTGLERVRGMKLTDSHIF-VRSDQIEDEFRSTYKLISEVLKTF 410

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            ++   +          +             + +      D    S      D+      
Sbjct: 411 NIQIDYLSLSLRDPNDKV-------------KFYKDDLMWDKAESSLEKVLIDLGLKYEK 457

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+  +    +      VS   ++    F    K+      T+   D K
Sbjct: 458 RIGDAAFYGPKLDIQIKT---AQNHEITVSTIQLD----FLMPNKF----DLTYIDKDQK 506

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                M   G IG      A +     G   + P  +AP ++ +I I    +   +    
Sbjct: 507 LVRPIMIHRGLIGTYERFIATLLEQTKG---VLPLWLAPKQVEIIPI---SESNLEYANL 560

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I+ +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  + 
Sbjct: 561 IHQKLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQI 620

Query: 428 DMSLEEVINYASHRFSNNR 446
            + ++E I+    + ++ +
Sbjct: 621 TVPIQEFIDMLKQQINDKK 639


>gi|315655105|ref|ZP_07908007.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490586|gb|EFU80209.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 623

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 142/233 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            R+F RLGL  +   A SGP+GG  S EF+     GE     S         +
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGEDTFVKSPGGYAANAEA 236



 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 3/171 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIE+GHIF  G KY+  +  +    +GK   V MGSYGIG  R+VAA+ E +HD 
Sbjct: 430 LTMERGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMGSYGIGVSRLVAAIAEENHDD 489

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           KG+IWP ++APF++ ++     D       EK+  +L   G  V +DD  +   G +F  
Sbjct: 490 KGLIWPLNIAPFQVHVLA-TGKDPEIFATAEKLACQLDAAGLQVLYDDRPKASAGVKFKD 548

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           A+LLG P  ++VG K +++ K+EI+ R  G  ++ + E  +        N 
Sbjct: 549 AELLGMPYALVVG-KGLAEGKIEIRQRREGTTQETTPESCVEELLQAIENE 598


>gi|298346548|ref|YP_003719235.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|298236609|gb|ADI67741.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 43063]
          Length = 623

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 142/233 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            R+F RLGL  +   A SGP+GG  S EF+     GE     S         +
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGEDTFVKSPGGYAANAEA 236



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 3/177 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RGIE+GHIF  G KY+  +  +    +GK   V MGSYGIG  R+VAA+ 
Sbjct: 424 PDGSGSLTLERGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMGSYGIGVSRLVAAIA 483

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           E +HD +G++WP ++APF++ ++     D       EK+  +L   G  V +DD  +   
Sbjct: 484 EENHDDRGLMWPLNIAPFQVHVLA-TGKDPEIFATAEKLACQLDAAGLQVLYDDRPKASA 542

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G +F  A+LLG P  ++VG K +++ KVEI+ R  G  ++ + E  +          
Sbjct: 543 GVKFKDAELLGMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESCVEELLQAIEKE 598


>gi|283955362|ref|ZP_06372861.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283793122|gb|EFC31892.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 602

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGAELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S+++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSNVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPNRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ++  K   V +    +G+      ++     G+   +   +AP  I ++ I    +
Sbjct: 461 EYTDSNNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAIGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L K   D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLKFNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|316965047|gb|EFV49888.1| threonyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
          Length = 714

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 156/425 (36%), Gaps = 49/425 (11%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L + ++   +A    H+ + R     + H+ S G   + P G    + +   +R++  + 
Sbjct: 281 LKLWEKMREEAASRDHRKLGRQQELFIFHELSPGSAFFFPRGAYIYNTLVEFLRKQYRKR 340

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW  SG +  Y K M ++ +   +     P +      +F + +++
Sbjct: 341 GFREVITPNIYNSRLWETSGHWQHYAKNMFKI-EIEKELFGLKPMNCPGHCLMFATGLRT 399

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP  F    +  R+EL     G+ R R F   DA+ F    +               
Sbjct: 400 YKELPLRFADFGVLHRNELSGALSGLTRVRRFQQDDAHIF-CRQDQIASEIEGCLDFLRF 458

Query: 184 IFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++  LG   + +   + P   +G   +       D  E Q+ C+ +    P         
Sbjct: 459 VYETLGFS-MKLYLSTRPDDFMGDVKTW------DEAEAQLQCALEKFKLP--------- 502

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D++    + +   ++    F    ++      
Sbjct: 503 --------WTLNAGDGAFYGPKIDIIVLDAMQRQHQCATIQLD----FQLPVRF----DL 546

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  K   V +    +G++  + AV+  +  GK   WP  ++P +  +I +     
Sbjct: 547 HYVDENHVKQRPVIIHRAVLGSIERMIAVLTENFAGK---WPFWLSPRQAMVIPVHP--- 600

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              D   ++  ++   G +   D D  + +  +   A L  +   ++VG+K   +S V I
Sbjct: 601 EFDDYALQVQQKIFDAGFECDVDVDASDTMKKKIRNAQLGKWNFILVVGAKEKENSSVNI 660

Query: 419 KHRLT 423
           + R  
Sbjct: 661 RTRDN 665


>gi|257867713|ref|ZP_05647366.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257874040|ref|ZP_05653693.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257876619|ref|ZP_05656272.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257801796|gb|EEV30699.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257808204|gb|EEV37026.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257810785|gb|EEV39605.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 569

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 148/234 (63%), Gaps = 1/234 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  +IREE
Sbjct: 1   MKQSKCLIPTLRETPSDAETLSHQLLVRAGYIRQVAAGIYVYLPLAQRVLEKIKRVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM++P+L   + W ESGR   YG+ + RL DRN++ ++ GPTHEE  T + ++
Sbjct: 61  LAQIDAVEMAMPSLLPYEPWKESGRASLYGESLYRLTDRNEREIVLGPTHEEPFTTLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +YN+  ++
Sbjct: 121 EITSYKRLPLSLYQIQTKYRDEQRPRFGLIRSREFIMQDGYSFHADEASLDQTYNRYEMA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  I  R G++   +  ++G +GG  S EF+ L+  GE ++ C     D+    
Sbjct: 181 YHAILKRCGIEYRAVVGDNGLMGGRDSKEFLALSGIGE-ELICYSTESDYVANW 233



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 3/182 (1%)

Query: 265 EKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P+ K      RGIEVGHIF  GTKYS    AT    +G +  + MG YG+G  
Sbjct: 387 VQEGDPSPDGKGTLTFTRGIEVGHIFKLGTKYSEAQEATVVDENGDEQPIIMGCYGLGVS 446

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R+++ ++E   +  GI WP  +APF + +I     D       E++   +++VG  V  D
Sbjct: 447 RLLSTIVEQYGNEFGIDWPQEIAPFDVHIIQTSIEDSYQNALSEEVEEMMNQVGYQVLVD 506

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D  E+ G +FA ADL+G P+++ +G K V    VEIK + TG   ++  EEV +  +   
Sbjct: 507 DRNERAGVKFADADLIGCPIRLTIGKKAVE-GIVEIKIKHTGATVEVRKEEVASTLTILL 565

Query: 443 SN 444
           +N
Sbjct: 566 AN 567


>gi|306823404|ref|ZP_07456779.1| proline--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|309802595|ref|ZP_07696699.1| proline--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|304553111|gb|EFM41023.1| proline--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|308220659|gb|EFO76967.1| proline--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 611

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 151/283 (53%), Gaps = 1/283 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   
Sbjct: 185 YERIFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEP 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + I           P    + + ++ +  +   + R   R  +
Sbjct: 245 EAIDCTDTPAAEKRPTPDAATI-DKMVEFANANHSRSDGRAWQ 286



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 444 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDDKGLA 503

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 504 WPAVIAPAQVHVVA-TGKDAAAFEAAEQLIAELEAKGIEVIFDDRKKVSPGVKFKDAELI 562

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  + G   V++  +E++ R     E + + +     + R +
Sbjct: 563 GVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAAQVIADRVA 607


>gi|297562207|ref|YP_003681181.1| threonyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846655|gb|ADH68675.1| threonyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 657

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 141/447 (31%), Gaps = 41/447 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD      +L L + +  +   G+  + P G      +    R     
Sbjct: 247 KDHLTFLEEAEKRDHRKLGSELDLFS-IPDEIGSGLAVFHPKGGTVRRVMEDYSRRRHEE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P      L+ +SG  D Y   M         +     P +  +   IF +  
Sbjct: 306 DGYEFVYTPHATKGTLFEKSGHLDWYADGMYPPMQLDGGQDYYLKPMNCPMHHLIFDARG 365

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ R+R F   D++ +  T E      + +    
Sbjct: 366 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIY-CTKEQMADELDSLLTFV 424

Query: 182 LRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           L +    GL    +   +  P     + E    A     +    +       P+      
Sbjct: 425 LDLLRDYGLDDFYLELSTKDPEKYVGTDEVWEEATEILREAAQKQGLELVLDPA------ 478

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      + +  D++    ++S   ++                 
Sbjct: 479 --------------GAAFYGPKISVQAKDAIGRTWQMSTIQVDFNMPER--------FDL 516

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ADG +   V +     G++    AV+   + G    W   +AP +   I I     
Sbjct: 517 EYTAADGSRQRPVVIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPIA---D 570

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++ ARL   G  V  D   +++  +   A     P  ++ G + VS + V  +
Sbjct: 571 EHVPYLRELAARLRAEGIRVEVDASDDRMQKKIRNAQKQKVPFMLLAGDEDVSKNAVSFR 630

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
           +R       + L+E +          R
Sbjct: 631 YRDGSQNNGVPLDEAVAEIVAAVRERR 657


>gi|315657037|ref|ZP_07909922.1| proline--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492429|gb|EFU82035.1| proline--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 623

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 142/233 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            R+F RLGL  +   A SGP+GG  S EF+     GE     S         +
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGEDTFVKSPGGYAANAEA 236



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  +    +GK   V MGSYGIG  R+VAA+ E +HD +G++
Sbjct: 434 RGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMGSYGIGVSRLVAAIAEENHDDRGLM 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++APF++ ++     D       EK+  +L   G  V +DD  +   G +F  A+LL
Sbjct: 494 WPLNIAPFQVHVLA-TGKDPEIFATAEKLACQLDAAGLQVLYDDRPKASAGVKFKDAELL 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P  ++VG K +++ KVEI+ R  G  ++ + E  +          
Sbjct: 553 GMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESCVEELLQAIEKE 598


>gi|332670551|ref|YP_004453559.1| threonyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
 gi|332339589|gb|AEE46172.1| threonyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
          Length = 670

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/467 (17%), Positives = 148/467 (31%), Gaps = 60/467 (12%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           SK  L    E   +AE   H+     L L +    +   G+  + P G      + A  R
Sbjct: 242 SKDELKAYLERVAEAERRDHRRLGSELDLFS-FPDEIGSGLAVFHPKGGLIRMEMEAYSR 300

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIY 106
           +     G   ++ P +    L+  SG  D Y   M                 R  +    
Sbjct: 301 KRHVEAGYSFVNTPHITKERLFQLSGHLDWYADGMYPPMHLDEELDDEGNVKRQGQNYYL 360

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   ++RS  +SYR LP   ++    +R E      G+ R+R F   DA+ +  
Sbjct: 361 KPMNCPMHNLVYRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGMTRARGFTQDDAHIY-C 419

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCS 224
           T +  K    ++    L +    GL    +   +  P       +    A     +V  S
Sbjct: 420 TLDQMKDELTRLLTFVLDLLKDYGLDDFYLELSTKNPEKFVGDDDVWERATETLREVAQS 479

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 P P                       A      + +  D++    ++S   ++ 
Sbjct: 480 SGLELVPDPG--------------------GAAFYGPKISVQAKDAIGRTWQMSTIQLD- 518

Query: 285 GHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                    ++LP      +   DG +   V +     G++    AV+   + G    W 
Sbjct: 519 ---------FNLPELFELEYTAPDGSRQRPVMIHRALFGSIERFFAVLTEHYAGAFPAW- 568

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++  + +    +      E + A+L   G     D   ++ G +   A     P
Sbjct: 569 --LAPVQVLAVPVA---EPFEPYLEDVVAQLRAEGIRAEIDRSDDRFGKKIRNASTQKIP 623

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             +IVG +      V  ++R       + + E +            V
Sbjct: 624 FVLIVGGEDADAGAVSFRYRDGRQDNGVPVAEAVQRIVTAVRERAQV 670


>gi|304389734|ref|ZP_07371693.1| proline--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304326910|gb|EFL94149.1| proline--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 623

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 142/233 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            R+F RLGL  +   A SGP+GG  S EF+     GE     S         +
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGEDTFVKSPGGYAANAEA 236



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  +    +GK   V MGSYGIG  R+VAA+ E +HD +G++
Sbjct: 434 RGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMGSYGIGVSRLVAAIAEENHDDRGLM 493

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP ++APF++ ++     D       EK+  +L   G  V +DD  +   G +F  A+LL
Sbjct: 494 WPLNIAPFQVHVLA-TGKDPEIFATAEKLACQLDAAGLQVLYDDRPKASAGVKFKDAELL 552

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P  ++VG K +++ KVEI+ R  G  ++ + E  +          
Sbjct: 553 GMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESCVEELLQAIEKE 598


>gi|311113703|ref|YP_003984925.1| threonine--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310945197|gb|ADP41491.1| threonine--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 678

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 144/443 (32%), Gaps = 32/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +        G+    P G      +   +R      
Sbjct: 253 EYKHRIAEAERRDHRRLGKELDLFS-FPKNIGPGLPVIHPKGGVIKREMEDYVRARHIAE 311

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +S P +   DL+  SG    Y   M      ++        +  +  +I+RS  +S
Sbjct: 312 GFQYVSTPHISKEDLFYTSGHLPYYADGMFPAMVLDNGNYRLKAMNCPMHNEIYRSRGRS 371

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F++    +RDE      G+ R R     D++S+ +T E +      +    L 
Sbjct: 372 YRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSY-VTKEQAPDEVRHLLNFMLS 430

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G+    +   +    GD   +FI   +  E      +                  
Sbjct: 431 LLEDFGMTDFYLELSTRDTEGDKKDKFIGTDEQWEQATAVLEQV--------------AQ 476

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +       A      + +  D++    ++S    +      FG +Y        +
Sbjct: 477 ETGLELVPDPGGAAFYGPKISVQAKDAIGRTWQMSTVQYDFNQPSRFGLEY--------Q 528

Query: 304 GADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG     V + S   G++     V+   + G    W   ++P ++  + +    +   
Sbjct: 529 AADGSIQEPVMIHSAKFGSIERFLGVLTEHYAGAFPAW---LSPVQVICVPVA---EAFN 582

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I  +L + G  V  D   ++   +   A     P  +I G +      V  + R 
Sbjct: 583 DYMTEIADKLREQGVRVEVDYGSDRFTKKIRTASTEKVPFILIAGGEDAEAGAVSFRFRG 642

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + ++E +        N 
Sbjct: 643 NKQENGVPVDEAVARIVEHIRNR 665


>gi|68468847|ref|XP_721482.1| hypothetical protein CaO19.2984 [Candida albicans SC5314]
 gi|68469391|ref|XP_721210.1| hypothetical protein CaO19.10501 [Candida albicans SC5314]
 gi|46443119|gb|EAL02403.1| hypothetical protein CaO19.10501 [Candida albicans SC5314]
 gi|46443402|gb|EAL02684.1| hypothetical protein CaO19.2984 [Candida albicans SC5314]
          Length = 455

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 154/449 (34%), Gaps = 63/449 (14%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              +  I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P 
Sbjct: 30  TQSNHVISSKQLLYTTD---PTSPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPL 86

Query: 74  LQSADLWVESGRYDSYGKEMLRL----------AD-RNDKAMIYGPTHEEVMTDIFRSHI 122
           +    LW +SG +D+Y  +M ++           D   +      P +      IF    
Sbjct: 87  IFKTKLWKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMNCPSHCMIFAKFD 146

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP  +       R+E      G+ R R F   D + F  + +             
Sbjct: 147 RSYQELPVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF-CSMDQIDGEIKNTLELI 205

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              ++  G+  I     + P                    F  +        S+  +  +
Sbjct: 206 KDTYNVFGINEIEFYLSTRP-----------------EDKFIGEIETWDIAESQLKNVLN 248

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +            A      +  L D+  +  +V    ++    F    ++       
Sbjct: 249 STAGEGNWATREGDGAFYGPKIDVLLKDAFNKKHQVGTIQLD----FQLPNRF----ELK 300

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DGK     + +     G++    A++   + GK   WP  + P +  ++ I    +
Sbjct: 301 YVGEDGKRDHQPILVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQALIVPIN---E 354

Query: 360 VCRDACEKIYARLSKV--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 E++  +LS                   V  D  GE +G++   A   G+   ++
Sbjct: 355 SHVPVAEELQKKLSGNIVSCDNAIAPLTGFNFHVDIDKRGETVGARTKDAIQKGYSYLIM 414

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K +++    ++ R     ++M+ +E+
Sbjct: 415 IGDKDIANGTFAVRSRDDRKIKNMTSDEI 443


>gi|256825369|ref|YP_003149329.1| threonyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688762|gb|ACV06564.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Kytococcus
           sedentarius DSM 20547]
          Length = 660

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 147/451 (32%), Gaps = 35/451 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG----MIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L   QE   +AE   H+ +           +   G+  + P G      +   + +
Sbjct: 239 SKEELKAYQERLAEAERRDHRKLGAEMDLYSFPEEVGPGLPVFHPKGAILRRTMEDYVWK 298

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G   ++ P L    L+  SG    Y   M+   D + +A      +  +   I+R
Sbjct: 299 RHVEEGFSYVTTPHLSKEGLFHTSGHLPYYADGMMPELDDDGQAYRIKAMNCPMHNLIYR 358

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP  +++    +R+E      G+ R R     D++S+ +T E +      + 
Sbjct: 359 SQQRSYRELPLRYFEFGTVYRNEKSGVLQGLTRVRMITQDDSHSY-VTREQAPGEVKHLL 417

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    G+    +   +    GD   +FI   +         +             
Sbjct: 418 DFVLSLLRDFGMDDYYLELSTRAEEGDKKDKFIGTDEQWAEATAVLEQV----------- 466

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                     +       A      + +  D++    ++S    +      FG +YS   
Sbjct: 467 ---ATETGLELVPDPGGAAYYGPKISVQARDAIGRTWQMSTIQYDFNQPERFGLEYSAA- 522

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                  DG +   V + S   G++     V+   + G+  +W   +AP ++  + +   
Sbjct: 523 -------DGTRQQPVMIHSAKFGSIERFIGVLVEHYAGQFPVW---LAPVQVLGVPVA-- 570

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  +   E + A++   G     D   ++   +   A     P  +I G +      V 
Sbjct: 571 -EDFQPYLEDVLAQMRAQGIRTEIDASDDRFPKKIRNASKSKVPFTLIAGGEDRDAGAVS 629

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + R       + + + I            V
Sbjct: 630 FRFRDGSQENGVPVADAIARIREAIDTRAQV 660


>gi|171741061|ref|ZP_02916868.1| hypothetical protein BIFDEN_00127 [Bifidobacterium dentium ATCC
           27678]
 gi|171276675|gb|EDT44336.1| hypothetical protein BIFDEN_00127 [Bifidobacterium dentium ATCC
           27678]
          Length = 611

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 151/283 (53%), Gaps = 1/283 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   
Sbjct: 185 YERIFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEP 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + I           P    + + ++ +  +   + R   R  +
Sbjct: 245 EAIDCTDTPAAEKRPTPDAATI-DKMVEFANANHPRSDGRAWQ 286



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 444 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDDKGLA 503

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 504 WPAVIAPAQVHVVA-TGKDAAAFEAAEQLIAELEAKGIEVIFDDRKKVSPGVKFKDAELI 562

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  + G   V++  +E++ R     E + + +     + R +
Sbjct: 563 GVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAAQVIADRVA 607


>gi|121708695|ref|XP_001272218.1| threonyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119400366|gb|EAW10792.1| threonyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 743

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 148/438 (33%), Gaps = 22/438 (5%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H  + +        + S G    LP G K  + + A++R E  + G  E+  P 
Sbjct: 315 EAEKRNHLRIGKDQELFFFDEVSPGCPFLLPNGTKIFNALQALLRSEYRKRGYQEVQTPN 374

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    +W  SG +  Y  +M +L D   +     P +      +F    +SYR LP    
Sbjct: 375 MYDVGVWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGHRERSYRELPLRIA 433

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E      G+ R R+F   D + F  T +        +F     I+   G   
Sbjct: 434 DFGVLHRNEASGALSGLTRVRKFQQDDTHIF-CTQDQISSEIEGLFDFLQSIYGLFGFTF 492

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++  + P       +    A+             D+ I   +  F       +I +  
Sbjct: 493 -KLKLSTRPEKYLGDLDTWNYAEEQLKSAMTKFKGADWTIDEGDGAFYGPKIDITIADAL 551

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              +         +L    P N ++     E G      +K      +   G  G+   V
Sbjct: 552 KREFQCA----TIQLDYQAPINFKLEYMTNEKGQAVMEESKKEGETKSNEPGP-GRARPV 606

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    IG+      ++     GK   WP  ++P +I ++ +        D  E++   L
Sbjct: 607 VIHRAIIGSFERFLGILIEHFGGK---WPFWISPRQILIVPVMP---AVNDYVEELQQIL 660

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDM 429
                +V  D  G  +  +     L  +    +VG++      V I++R    T  +  M
Sbjct: 661 RGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVGAQEKESRSVNIRNRDDPATQNKGVM 720

Query: 430 -SLEEVINYASHRFSNNR 446
             LEE            +
Sbjct: 721 VPLEEAREKLRILRKERK 738


>gi|227499759|ref|ZP_03929859.1| proline--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227218145|gb|EEI83411.1| proline--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 572

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/231 (45%), Positives = 151/231 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY++P L+++P DAE  SHK + R G I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MKLSKYYMPTLRQDPVDAETESHKFLTRGGFIRKQASGVYSFLPLGKKVVNKIEAIVREA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM ++ DR+D+    GPT EE  T + + 
Sbjct: 61  MEDYDSIEVSTSILQTREIWEASGRWETFGPEMFKIKDRHDREYCLGPTAEESFTSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD   EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDKDMEGLEVSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y + F R+GL    +  +SG +GG  SHEFI L++TGE  +  + D     
Sbjct: 181 YEQAFDRMGLDYKIVEGDSGSMGGKKSHEFIALSETGEGVILYTDDSDYAA 231



 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/236 (34%), Positives = 118/236 (50%), Gaps = 11/236 (4%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPIG  L  +  VL D   T++       +  + +  TD+  I +              
Sbjct: 333 TGPIG--LGDDVRVLIDESLTKI------NNLLVGANKTDYHYINANFGRDFDGEIVEDL 384

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +    +  +D     K   ARGIEVG+IF  GTKYS  + A F   +GK     MGSYG
Sbjct: 385 LTAKAGDMAYDGSGILK--EARGIEVGNIFQLGTKYSDSLGAYFLDENGKQQAFIMGSYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R V+A++E  HD KGIIWP SVAPF+  +  +  +++  ++  EKIY RL +   D
Sbjct: 443 IGITRSVSAIVEQYHDDKGIIWPTSVAPFEAIVTIVNINNEEQKELGEKIYKRLKEERID 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           V  DD  E+ G +F   DL+G P ++ VG K  SD  VE   R     E ++ ++ 
Sbjct: 503 VLLDDRKERAGVKFNDRDLIGIPYRITVG-KDASDDIVEYSTRALMENEKITSDQA 557


>gi|315635477|ref|ZP_07890743.1| threonine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315480235|gb|EFU70902.1| threonine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 602

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 156/443 (35%), Gaps = 41/443 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E   RD      +L L T        G+  WLP G +    +  ++ +     G
Sbjct: 197 YTRMLEEAKKRDHRKLGTELELFT-FNDDVGAGLPMWLPKGARLRSKLEHLLYKAHRIRG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  A++W  SG Y +Y + M      +D+     P +      IF++++ SY
Sbjct: 256 YEPVRGPEILKAEMWKISGHYANYKENMY-FTTIDDQEYGIKPMNCVGHIQIFKNNLVSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP   ++  +  R E+     G+ R REF   D++ F  T +  K    ++      +
Sbjct: 315 KELPKKLFEYGVVHRHEMSGAMHGLFRVREFTQDDSHIF-CTQDQIKQVIFEVLEFVDTL 373

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                 K   +   + P        F      G        +                  
Sbjct: 374 LKVFDFKY-EIEVSTKPEKAIGDDIFWEKTTKGIMDALDENNISYGIDEGGG-------- 424

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D++    +     +++              +  +  
Sbjct: 425 ------------AFYGPKIDIKILDAIGRKWQCGTVQVDMNLPSR--------FNVEYIN 464

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G K+  V +    +G+      ++     G+    P  +AP ++  + I        +
Sbjct: 465 EKGEKEQPVMIHRAILGSFERFIGILTEHCAGEF---PFIIAPTQVIFVPIA---DSHVE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L +   D    +M E +  +  +A+    P+ V++G + V +  V +++R T
Sbjct: 519 YAKELQKALLENDLDSEIYNMNESLNKRIRMAEKQRVPMIVVIGDEEVENKTVALRNRRT 578

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             + +MS  E I+  +   + +R
Sbjct: 579 REQSNMSKNEFISMLNEIKNGSR 601


>gi|322368472|ref|ZP_08043041.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552488|gb|EFW94133.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 640

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 148/441 (33%), Gaps = 42/441 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L +  I +    G+  + P G+  L  ++    E  
Sbjct: 228 LEQYLERMEEAEERDHRKLGKELDLFS--IDETTGPGLPLYHPHGKTILRELSDYAGELN 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L   +LW +SG YD+Y  +M  L D ND+     P +      IF  H
Sbjct: 286 RGAGYDEVETPHLFRTELWKKSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFDQH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP  +++    +R E R    G+ R   F + D + F + P+  +    ++   
Sbjct: 345 SWSYRDLPIRYFENGKVYRKEQRGELSGLSRVWSFTIDDGHLF-VRPDQIEREIRQVMDL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +     L  + +   + P     S E    A+     V  S          +     
Sbjct: 404 IFEVIETFDLD-VEVALATRPEKSVGSDELWEHAEEQLRSVLESTGIDYDIEAGDG---- 458

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +    D+L          ++      F   Y      
Sbjct: 459 ----------------AFYGPKIDFGFEDALGRVWDGPTVQLDFNMPERFDLTY------ 496

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                + ++  V +     G+      V+    DGK  +W   ++P ++ ++ +   +  
Sbjct: 497 -VTEENEEERPVMIHRALYGSYERFFMVLIEHFDGKFPLW---LSPEQVRVLPVSDDN-- 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L      V  +D    +G +   A     P  +IVG        + ++ 
Sbjct: 551 -LGYAHRVANELDD--FRVEVEDRSWTVGRKIQQAHDDRVPYMIIVGGDEEEAGTISVRD 607

Query: 421 RLTGIREDMSLEEVINYASHR 441
           RL    +D+SLE    +    
Sbjct: 608 RLEREEKDVSLEAFREHLEAE 628


>gi|256075323|ref|XP_002573969.1| prolyl-tRNA synthetase [Schistosoma mansoni]
 gi|238659161|emb|CAZ30202.1| prolyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 472

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/417 (27%), Positives = 177/417 (42%), Gaps = 37/417 (8%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S KL+   G+I   S G+Y++ P   ++L  + +++     + GA  + +PTL    +W
Sbjct: 26  VSQKLLRLYGLIFSDSTGVYAFGPEVLRSLRKLESLVDNSMLQLGAQRVLLPTLGPRHIW 85

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            +SGR+ +    + R+ DR        PTHEE +T+       SY++LP   YQI  KFR
Sbjct: 86  EKSGRWSTMQSSLFRVKDRLSHEYCLQPTHEEYITNFVACLNLSYKSLPVLVYQITSKFR 145

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE  P+ G++R REFLM+D Y+FD + E ++ +Y ++  +Y  +   L L  +   A+ G
Sbjct: 146 DEPHPKHGLVRGREFLMQDIYTFDASVETAEKTYKRVKTAYSDLMVNLELPYLVACADPG 205

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            +GG +S EF V AD GE ++            SE             V+          
Sbjct: 206 NVGGLISEEFHVEADIGEDRILTCSKCS-LKFNSELEGIYHYEGNYLQVKLPAPSVPYNL 264

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                  F              +V H F  G +YS    AT++   G    + MG YG+G
Sbjct: 265 AQKYSMKF--------------KVAHCFLLGERYSKCFDATYRSPSG-SKLMFMGCYGLG 309

Query: 321 AMRVVAAVIESSHDGKGI----------IWPDSVAPFKISLINIK--AHDQVCRDACEKI 368
             R++A  IE                   WP  +AP+  +++  K  A D V  D  + I
Sbjct: 310 ISRLLAVCIEHLTRVAFPDKSKDQITQLRWPVRIAPYSGAIVLQKEMAKDSVNPDELKYI 369

Query: 369 YARLSKVGC------DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +           D+  DD  G  +G +      LG P  + V  K   D   E+
Sbjct: 370 LDTIQSDSINFKLPGDILVDDRMGLSLGRKILDQSRLGIPWILTV--KSQRDGTYEL 424


>gi|311742315|ref|ZP_07716124.1| threonine--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313943|gb|EFQ83851.1| threonine--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 661

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 144/444 (32%), Gaps = 39/444 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      +L L +    +   G+  + P G      +   +R      G 
Sbjct: 249 LFRIEEAQRRDHRRLGTELDLFS-FPDEIGSGLPVFHPRGGVIKREMEDYVRRRHIEEGF 307

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +    L+  SG    YG+ M    D +         +  +   IFRS  +SYR
Sbjct: 308 EYVGTPHIAKEGLFHTSGHLPYYGEGMFPALDVDGSDYRLKAMNCPMHNLIFRSRGRSYR 367

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP  F++    +R+E      G+ R R F   D++S+ +TPE +      +    L + 
Sbjct: 368 ELPLRFFEFGHVYRNEKSGVIHGLTRVRGFAQDDSHSY-VTPEQAPGEIRHLLQFVLSLL 426

Query: 186 HRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
              GL    +   +     D    S E    A      V         P P         
Sbjct: 427 RDFGLDDFYLELSTRDASKDKFIGSDEDWATATKVLEDVCLESGLELVPDPG-------- 478

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + +  D++  + ++S    +               +  +
Sbjct: 479 ------------GAAYYGPKVSVQARDAIGRSWQMSTIQYDFNQPS------PERFNLEY 520

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG +   V + S   G++     V+   + G     P  +AP ++  I +    +  
Sbjct: 521 VAADGSRRQPVMIHSAKFGSIERFMGVLVEHYAGAF---PPWLAPVQVVGIPVA---ERH 574

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    + ARL  +G     D   E++  +   A     P  ++ G   +    V  ++R
Sbjct: 575 ADYLVNLTARLRALGIRAEVDHSDERMQKKIRNAQTQKVPFMLLAGDNDIDGGAVSFRYR 634

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  ++L+E I        + 
Sbjct: 635 NGEQDNGVALDEAIERIVAAVRDR 658


>gi|260886940|ref|ZP_05898203.1| proline--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260863002|gb|EEX77502.1| proline--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 543

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 137/206 (66%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y++LPL  + +  +  IIREE +  G  E+ +P +Q A++W ESGR
Sbjct: 1   MLRAGMIRKAAGGVYTYLPLAWRTIKKIEQIIREEMDAAGGQELCMPIMQPAEIWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +  +G+EM RL D + +    GPTHEE++T + R  ++SY+ LP   YQIQ K+RDE+RP
Sbjct: 61  WSVFGQEMFRLKDCHGREFCLGPTHEEMITTLVRDEVRSYKQLPLLLYQIQNKYRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFG+MRSREF+MKD YSFD    G+  SY KM+ +Y  +F R GLK  P+ A++G IGG+
Sbjct: 121 RFGLMRSREFIMKDLYSFDKDEAGADISYKKMYDAYTNVFTRCGLKFRPVEADAGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            +HEF VLA  GE+++ C        
Sbjct: 181 HTHEFTVLAAAGESEIACCTACDYAA 206



 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 2/179 (1%)

Query: 268 FDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            D  P         RGIE G +F  GTKYS  + ATF   +GK+  + MG YGIG  R +
Sbjct: 364 GDPCPHCGAPVEITRGIEAGQVFKLGTKYSEALGATFLDENGKEKALFMGCYGIGVGRTM 423

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA IE  +D  GIIWP ++AP+++ ++ + A         E++Y  L   G D   DD  
Sbjct: 424 AAAIEQHNDEHGIIWPRAIAPYEVVVVPVNAKASEQLALAEEVYEMLLAAGVDAILDDRK 483

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G +F  ADL+G+PL++ +G K + + K+E+K R +G   D +  E +        +
Sbjct: 484 DRAGVKFKDADLIGYPLRITIGPKALEEGKIELKVRRSGESCDCTKAECLAKVQELLKD 542


>gi|70607029|ref|YP_255899.1| threonyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|68567677|gb|AAY80606.1| threonine-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
          Length = 552

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 158/448 (35%), Gaps = 41/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  I   +L L +    +   G+  + P GQ     +   + E  
Sbjct: 130 QLKDYLNWLEKVSEYDHRIIGDRLDLFS-FPEEAPPGVVLFHPNGQIIRKEMMRFMEEIN 188

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +  + LW  SG YD Y  +ML     ND+ +   P +      I++S 
Sbjct: 189 DSMGYKEVYTSHVYRSLLWKISGHYDYYKDKMLLFEIDNDEELGIKPMNCPAHILIYKSK 248

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY++LP  F +    +R E +    G++R R F   D + F L  +  K     +   
Sbjct: 249 VRSYKDLPIRFSEFGHVYRWEKKGELYGLLRVRGFTQDDGHIF-LREDQIKDEIKLLMKK 307

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            L +    G     + +   + P     + E    A           +        E   
Sbjct: 308 TLDVLAIFGFKGDDVRVNLSTRPDESIGTDEQWNKATDALISALNELNIKYEVKEKEGAF 367

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I  +                    + DSL    ++S   ++    F    ++    
Sbjct: 368 YGPKIDFD--------------------IRDSLSRWWQLSTIQVD----FNLPERF---- 399

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W   ++P ++ ++ I   
Sbjct: 400 KLEYVDKDGSKKRPVMVHRAIYGSIDRFMAILLEHFRGKLPTW---LSPIQVRVLPIT-- 454

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    + A+L +    V  D   E +  +   A   G P  +IVG K   + KV 
Sbjct: 455 -DEIEDYGNSLMAKLRENKIRVDMDSGEETLSKRIKKAYDDGVPYLIIVGRKEKDEGKVT 513

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       +++E+ +        N 
Sbjct: 514 VRARGNIEIRGINVEKFVQALVEEIRNK 541


>gi|325000692|ref|ZP_08121804.1| threonyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 682

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/455 (15%), Positives = 141/455 (30%), Gaps = 51/455 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +  + RE     G
Sbjct: 251 YLERVAEAERRDHRRLGSELDLFS-FPDEIGSGLPVFHPKGGVVRKELEDLSRERHAAAG 309

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHEEV 113
              +  P      L+  SG  D Y   M      + +                 P +  +
Sbjct: 310 YEFVYTPHATKGQLFELSGHLDWYADGMYPPMQLDAEYDAEGQLKRPAVDYYLKPMNCPM 369

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 370 HNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTRDQMQD 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    A     +   +       
Sbjct: 429 EIRSLLQFVLDLLRDYGLDDFYLELSTRNPEKSIGSDELWEEATDALREAAGN------- 481

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                            +       A  +   + +  D++    ++S   +++       
Sbjct: 482 -------------FGLELRDDPGGAAFYAPKISVQARDAIGRYWQMSTIQVDLM----LP 524

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +   DG +   V +     G++     V+   + G    W   +AP ++ 
Sbjct: 525 DRF----ELEYTAGDGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVV 577

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +    +   D   +I ARL   G  +  D   +++  +     L   P  ++ G + 
Sbjct: 578 GIPVTDTQE---DYVREIAARLRAEGIRIDVDAGDDRMQKKIRTHTLQKVPFLLLAGGRD 634

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V    V  + R       + +++ +        + 
Sbjct: 635 VEAGAVSFRFRDGSQTNGVPVDDAVRSIVAWVRSR 669


>gi|76363445|sp|Q4J9C4|SYT_SULAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 549

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 158/448 (35%), Gaps = 41/448 (9%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L  L++    D  I   +L L +    +   G+  + P GQ     +   + E  
Sbjct: 127 QLKDYLNWLEKVSEYDHRIIGDRLDLFS-FPEEAPPGVVLFHPNGQIIRKEMMRFMEEIN 185

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    +  + LW  SG YD Y  +ML     ND+ +   P +      I++S 
Sbjct: 186 DSMGYKEVYTSHVYRSLLWKISGHYDYYKDKMLLFEIDNDEELGIKPMNCPAHILIYKSK 245

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY++LP  F +    +R E +    G++R R F   D + F L  +  K     +   
Sbjct: 246 VRSYKDLPIRFSEFGHVYRWEKKGELYGLLRVRGFTQDDGHIF-LREDQIKDEIKLLMKK 304

Query: 181 YLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            L +    G     + +   + P     + E    A           +        E   
Sbjct: 305 TLDVLAIFGFKGDDVRVNLSTRPDESIGTDEQWNKATDALISALNELNIKYEVKEKEGAF 364

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +   I  +                    + DSL    ++S   ++    F    ++    
Sbjct: 365 YGPKIDFD--------------------IRDSLSRWWQLSTIQVD----FNLPERF---- 396

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG K   V +     G++    A++     GK   W   ++P ++ ++ I   
Sbjct: 397 KLEYVDKDGSKKRPVMVHRAIYGSIDRFMAILLEHFRGKLPTW---LSPIQVRVLPIT-- 451

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    + A+L +    V  D   E +  +   A   G P  +IVG K   + KV 
Sbjct: 452 -DEIEDYGNSLMAKLRENKIRVDMDSGEETLSKRIKKAYDDGVPYLIIVGRKEKDEGKVT 510

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R       +++E+ +        N 
Sbjct: 511 VRARGNIEIRGINVEKFVQALVEEIRNK 538


>gi|119963884|ref|YP_948047.1| threonyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|166223318|sp|A1R735|SYT_ARTAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119950743|gb|ABM09654.1| threonyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 669

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/464 (16%), Positives = 142/464 (30%), Gaps = 60/464 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLM-LRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L   QE   +AE   H+ + +   +     +   G+  + P G      +    R+
Sbjct: 242 TKEALKAYQERIAEAERRDHRKLGVELDLFSFPDELGSGLPVFHPKGGIIRKAMEDYSRQ 301

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYG 107
                G   +  P +    L+  SG  D Y   M      + +                 
Sbjct: 302 RHVDAGYEFVYTPHITKGHLYEVSGHLDWYKDGMFPAMQVDAEFNEDGSVRKPAQDYYLK 361

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +  +   IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +  T
Sbjct: 362 PMNCPMHNLIFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CT 420

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVF 222
            E  K          L +    GL    +   +      +G D + E    A    ++V 
Sbjct: 421 REQMKDELTTTLNFVLGLLKDYGLDDFYLELSTKNEEKFVGDDAAWE---EATRTLSEVA 477

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +      P P                       A      + +  D+L    ++S   +
Sbjct: 478 EASGLHLVPDPG--------------------GAAFYGPKISVQAKDALGRTWQMSTIQL 517

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       ++ ADG     V +     G++     V+   + G    W 
Sbjct: 518 D----FNLPERF----ELEYQAADGTRQRPVMIHRALFGSVERFMGVLTEHYAGAFPAW- 568

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++  I +    +   D    +  +L   G     D   ++   +   A     P
Sbjct: 569 --LAPVQVVGIPVA---ETFNDYMFDVVGQLKAAGIRAEVDISSDRFPKKIRTASKDKIP 623

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +I G +      V  + R       + + E +        N 
Sbjct: 624 FVLIAGGEDAEAGAVSFRFRDGSQDNGVPVAEAVRRIVDAVKNR 667


>gi|317125011|ref|YP_004099123.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Intrasporangium
           calvum DSM 43043]
 gi|315589099|gb|ADU48396.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Intrasporangium
           calvum DSM 43043]
          Length = 664

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 148/445 (33%), Gaps = 32/445 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +   +R      G
Sbjct: 250 YLDRLAEAERRDHRRLGAELDLFS-FPDELGSGLPVFHPKGGVIKREMEDYVRRRHIEEG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    L+  SG    Y   M    +           +  +   I++S  +SY
Sbjct: 309 FDYVGTPHITKDGLFHTSGHLPYYADTMFPPMELEGAKYQLKAMNCPMHNLIYQSRGRSY 368

Query: 126 RNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F++    +R E      G+ R R     D++S+ +TPE +      +    L +
Sbjct: 369 RELPLRFFEFGSVYRYEKSGVVHGLTRVRGMTQDDSHSY-VTPEQAPAEIKHLLDFVLSL 427

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   +    G+ S +FI   +  E     +K   D    S      D   
Sbjct: 428 LRDFGLDDFYLELSTRDTEGEKSAKFIGSDEQWE---VATKVLEDVATASGLELVADPGG 484

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + +  D++    ++S    +      FG +Y        + 
Sbjct: 485 A-----------AFYGPKISVQARDAIGRTWQMSTIQYDFNQPERFGLEY--------QA 525

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG +   V + S   G++     V+   + G   +W   ++P ++  + +        D
Sbjct: 526 ADGTRQQPVMIHSAKFGSIERFLGVLVEHYAGAFPVW---LSPVQVLGVPVA---DEYAD 579

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  RL + G  V  D   ++   +   A     P  +I G    +   V  + R  
Sbjct: 580 YLGGVLDRLRRKGVRVELDASDDRFPKKIRNASKAKVPFVLIAGEDDRAADAVSFRFRDG 639

Query: 424 GIREDMSLEEVINYASHRFSNNRPV 448
             +  + +++ I       ++   V
Sbjct: 640 SQKNGVPIDDAIAEVLAAIASRAQV 664


>gi|322379034|ref|ZP_08053437.1| threonyl-tRNA synthetase [Helicobacter suis HS1]
 gi|322380800|ref|ZP_08054906.1| threonyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321146804|gb|EFX41598.1| threonyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321148526|gb|EFX43023.1| threonyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 601

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 151/444 (34%), Gaps = 44/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L          G+  WLP G +    +  ++ +   + 
Sbjct: 195 EYLYQLEEAKKRDHRKLGQELGLFC-FDENLGAGLPIWLPNGMRLRVRLENLLSKALLQY 253

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +  + LW +SG Y +Y + M      ++      P +      ++   ++S
Sbjct: 254 GYEPVRGPEILKSSLWQKSGHYQNYKENMY-FTTIDEVEYGIKPMNCVGHIKVYEHALRS 312

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  FY+  +  R E      G++R REF   DA+ F    +  K     +     +
Sbjct: 313 YRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIF-CRFDQIKTEVLSILEFTKK 371

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G                   E+ +   T   +        +    +     ++  
Sbjct: 372 VMGVFGF------------------EYEMELSTKPAKYIGEDHIWEQATNALKQALEEHN 413

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSAT 301
               I     A Y    D+                 R  + G +       +LP     +
Sbjct: 414 ISFGIDAGGGAFYGPKIDIKITDA----------IRRKWQCGTV---QVDMNLPARFELS 460

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    G  +  V +    +G+     A++   + G    +   +AP +I+L+ +      
Sbjct: 461 YTNETGNLEQPVMIHRAILGSFERFIAILTEHYSGNYPFF---IAPVQIALVPVSMD--- 514

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  ++IY +L+K G  V   D  E +  +    +    P  V+VG + V+   + I+ 
Sbjct: 515 QLEYAQEIYHKLNKRGFFVCMADKNETLSKRIRSLEKQKIPFIVVVGKEEVAQGSLAIRD 574

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R  G +  M  EE       +   
Sbjct: 575 RALGKQYTMLQEEFFQSMEAKMRE 598


>gi|212697111|ref|ZP_03305239.1| hypothetical protein ANHYDRO_01677 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675886|gb|EEB35493.1| hypothetical protein ANHYDRO_01677 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 447

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/232 (43%), Positives = 152/232 (65%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+++P+DAE  SHKL++R   I + S G+YS+LPLG + ++ +  I+R+   +  +I
Sbjct: 1   MPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMRVINKIENIVRKSMEKYDSI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T + +  + SY+ 
Sbjct: 61  EVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREYCLGPTAEEQFTSLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG + SY KM+ +Y+ +F  
Sbjct: 121 LPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLEKSYQKMWDAYVEVFDA 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           LGL    +  +SG +GG+ SHEF+ LA+TGE ++F +++            F
Sbjct: 181 LGLDYKIVEGDSGAMGGNTSHEFMALAETGEGEIFYTENSDYAATDESAKFF 232



 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            + +   ARGIEVG+IF  GTKYS  + A F   +GK   + 
Sbjct: 390 GKEELKIARGIEVGNIFQLGTKYSESLEAYFLDENGKQKTIY 431


>gi|225350874|ref|ZP_03741897.1| hypothetical protein BIFPSEUDO_02448 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158330|gb|EEG71572.1| hypothetical protein BIFPSEUDO_02448 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 611

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/283 (35%), Positives = 153/283 (54%), Gaps = 1/283 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   
Sbjct: 185 YERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEP 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + I  ++       P      + ++ +  +   + R   R  E
Sbjct: 245 EAIDFSNTPAAEKRPTPNAETI-DQMVEFANANHPRSDGRAWE 286



 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 4/232 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +TGE   +     +           +  +    +V           +    +  D  P+ 
Sbjct: 377 ETGEALRYLIDAHIARGSAWFTGADEAGVDYYDLVYGRDFEADGVVEAVQVRHGDMSPDG 436

Query: 275 KRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ 
Sbjct: 437 SGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETH 496

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
           HD KG+ WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +
Sbjct: 497 HDEKGLAWPAIIAPAQVHVVA-TGKDAAAFEAAEQLIADLEAKGIEVIFDDRKKVSPGVK 555

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  A+L+G PL  + G   V++  +E++ R     E + + +     + R +
Sbjct: 556 FKDAELIGVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAARVIADRVA 607


>gi|196000905|ref|XP_002110320.1| hypothetical protein TRIADDRAFT_22327 [Trichoplax adhaerens]
 gi|190586271|gb|EDV26324.1| hypothetical protein TRIADDRAFT_22327 [Trichoplax adhaerens]
          Length = 603

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 142/420 (33%), Gaps = 46/420 (10%)

Query: 3   RSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             K +L + QE   RD          +    +  S G    LP G + ++ +   +++E 
Sbjct: 222 LLKDWLKMQQEAKERDHRTIGK--DQKLFFFNPLSPGNAFLLPHGLRIINKLKNFLKDEY 279

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTD 116
              G  E+  P   + +LWV+SG +D Y  +M RL        N  ++   P +      
Sbjct: 280 RVRGYHEVETPLTFNQELWVQSGHWDHYSDDMFRLQSDPQDHENRGSISLKPMNCPGHCL 339

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF +   SYR+LP    +     RDE      G+ R R+F   DA+ F  T +       
Sbjct: 340 IFGNERHSYRDLPVRLAEFSALHRDEPSGSLGGLTRLRQFHQDDAHIF-CTKDQIGEEVQ 398

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                  + +         M+  + P G          A+     +  S          +
Sbjct: 399 DCLDLINKAYSIFDFNY-TMKLSTRPEGYLGETAVWEEAENRLVNILNSTGKEWSVNDGD 457

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      +  + D++  + + +   ++    F    +++
Sbjct: 458 G--------------------AFYGPKIDVMIQDAIGRSHQTATIQLD----FQLPKRFN 493

Query: 296 LPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           L     F  + G+ +H V +     G+      ++     G    WP  ++P ++S+ ++
Sbjct: 494 L----QFMNSSGELEHPVIIHRAIFGSFERFLGILIEHTAGN---WPFWISPRQVSVCSV 546

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D   +I   L   G     D     +  +  ++ L G+    +VG +     
Sbjct: 547 ---SERHNDYAREICDSLKINGLYADLDITDVVLNRKIRLSRLAGYNYIAVVGKEEFESK 603


>gi|219849385|ref|YP_002463818.1| threonyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|219543644|gb|ACL25382.1| threonyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 594

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 138/446 (30%), Gaps = 39/446 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L          G+  + P G+     +   +RE Q R
Sbjct: 182 EAYLHRLEESRRRDHRRLGKELGLF-FFSDDIGPGLPIFSPKGEIIRHEMEKFVREVQTR 240

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRS-H 121
            G   +    +    L+ +SG YD+Y   M        D      P +      ++    
Sbjct: 241 YGYQHVWTGNVVKEQLYRKSGHYDNYRDSMFPPMVESEDLIFRLKPMNCPSHMTLYNQLG 300

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP  F +    +R E      G+ R R     D + F   P+  +  ++     
Sbjct: 301 VISYRDLPLRFAEFATLYRYEDSGALSGLTRVRALTQDDCHIF-CRPDQIQEEFSLALQV 359

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +          +R       G    +                   +    +      
Sbjct: 360 IREVLGTYKFTDYKVRLSLRGKEGKYVQDD------------------EKWELATAALRA 401

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            + +      +     A      +    D L    ++S   ++       G         
Sbjct: 402 ALEANGVEYFEAEGEAAFYGPKADFLARDVLGREWQLSTIQVDFIQPARLG--------C 453

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D K H  V +     G       ++   + G   +W   +AP +  +I I     
Sbjct: 454 EYIGEDDKPHTPVVLHRAVTGTTERFMGILIEHYAGAFPLW---LAPVQAVIIPITDK-- 508

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+  RL   G  V  D+  +++  +   A L   P  +I+G++  S   V ++
Sbjct: 509 -QMEYARKVRQRLFAAGLRVELDENRDRMQGKIRRAQLQKIPYMLIIGAREESADAVAVR 567

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M +E  +  A       
Sbjct: 568 TRAGDDLGAMPVEAFLARALEEIRTR 593


>gi|254456980|ref|ZP_05070408.1| threonyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085772|gb|EDZ63056.1| threonyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 602

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 159/449 (35%), Gaps = 50/449 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD     +++ L T    +   G   WLP G +    + +++ +   
Sbjct: 194 LSAHMTMLAEAEKRDHRKIGNEMNLFT-FREEVGAGFPIWLPAGGRLRARLESLLYKAHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  +DLW  SG Y +YG+ M      +D      P +      ++   +
Sbjct: 253 KRGYEPVRGPEMLRSDLWKTSGHYQNYGENMY-FTKIDDIEFGVKPMNCVGHIKVYEDEL 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  +++  +  R E      G+ R REF   DA+ F  T E  +    ++    
Sbjct: 312 RSYRDLPIKYFEYGVVHRHEFTGALHGLFRVREFTQDDAHIF-CTSEQIEEQIIEVVDFV 370

Query: 182 LRIFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +I          M   + P   +G D   E    A             +D    +    
Sbjct: 371 DKIMSTFEFDY-KMMVSTKPEKAVGSDEVWEVSTQALKNAMDKNNLPYEIDEGGGAFYGP 429

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
             DI   ++I                               R  + G I      ++LP 
Sbjct: 430 KIDIKITDAI------------------------------GREWQCGTI---QLDFNLPE 456

Query: 298 -MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                + G + +    V +    +G+      ++   + G+    P  +AP +++++ I 
Sbjct: 457 RFELEYNGENNEKIQPVMIHRAILGSFERFIGILTEHYAGEF---PMFIAPTQVAIVPIA 513

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     +++  +L  +  D       + +  +   A+    P+ VI+G + V    
Sbjct: 514 DTHHG---YAKELADKLIDINADSEIYSKNDSLNKRIRTAEKTRVPMLVIIGDEEVEGRT 570

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V I+ R T  + ++S +E +     + + 
Sbjct: 571 VAIRDRRTREQYNLSEDEFLKLIQTKINE 599


>gi|318057114|ref|ZP_07975837.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318075787|ref|ZP_07983119.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 658

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 135/438 (30%), Gaps = 40/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-FPEEVGPGLAVFHPKGGIIRRAMEDYSRRRHEEEGYEFVYS 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHTTKGALFQKSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ RSR F   DA+ +  T E      +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   +        S E    A     QV   +     P P               
Sbjct: 432 LDDFYLELSTKDEKKFVGSDEVWEEATATLRQVAEKQGLPLVPDPG-------------- 477

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG- 307
                   A      + +  D++    ++S   ++    F    ++      ++  ADG 
Sbjct: 478 ------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLPERF----DLSYTAADGS 523

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   V +     G++    AV+   + G     P  +AP +   I +           ++
Sbjct: 524 RQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPVG---DAHVPYLKE 577

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A   + G  V  D   +++  +         P  VIVG   ++   V  +HR      
Sbjct: 578 FAAEARRKGLRVDVDASSDRMQKKIRNHQKQKTPFMVIVGDDDMNAGTVSFRHRDGSQEN 637

Query: 428 DMSLEEVINYASHRFSNN 445
            +  +E I          
Sbjct: 638 GIPKDEAIAKLLDIVERR 655


>gi|312077863|ref|XP_003141488.1| hypothetical protein LOAG_05904 [Loa loa]
 gi|307763347|gb|EFO22581.1| hypothetical protein LOAG_05904 [Loa loa]
          Length = 515

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 207/472 (43%), Gaps = 63/472 (13%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLP----------------- 44
           R S   L  L    + A+I  H+LML   +I Q  KGIYS LP                 
Sbjct: 72  RASTMLLGSLDVKAKTAQIF-HQLMLSKALIAQEHKGIYSILPIGIEKYIGLKWSLTVHF 130

Query: 45  ---LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
               GQ+ +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  EM  L D+ +
Sbjct: 131 AFFFGQRIIDKLVEVIETELNAIGAYKISMPILGAKEMWQKAGRWSTFESEMFHLNDKTN 190

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +     PTHEE++T +     +  +   P   YQ+  KFRDE     G +RSREFLM D 
Sbjct: 191 QVFCLQPTHEEMVTKLVAEQGELRKAIYPLMLYQMGPKFRDETVVGHGFLRSREFLMNDL 250

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           YSFD+T E +  +Y+ +   Y RIF  RLG+    +RA++G IGG++SHE+ +   T   
Sbjct: 251 YSFDITEENASDTYSLVSEVYQRIFRDRLGINFYTVRADTGNIGGEMSHEYHLPCRTSHD 310

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            +              N D           ++                            
Sbjct: 311 SIAYCAKCSL----GVNHDLLKSGEKPCCCDEEY----------------------TSII 344

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-DGKGI 338
           + IE+ H F  G  ++    A  +G       + M  +GIG  R++AA+I+S     + +
Sbjct: 345 KTIEIAHTFQLGDLFTKKFGAKHRG-----QLLIMNCFGIGIGRLIAALIDSMSPSARAL 399

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC---DVFWDDM-GEQIGSQFAV 394
             P  + PFK+++I             + I   LSK+     D+F DD     IG +  V
Sbjct: 400 RLPYPLTPFKVAVILPNKTQPETMAFAQDIIGLLSKIPSLQDDIFVDDRLDNSIGRRLRV 459

Query: 395 ADLLGFPLQVIVGSKFV----SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           A  LG P  ++VG++      S   VE       I E +S+ ++  +   RF
Sbjct: 460 AANLGVPHILVVGNRTARKLTSQPTVEYYRTEAYIDEPISVGDIEYFEIPRF 511


>gi|110004597|emb|CAK98934.1| probable threonyl-trna synthetase 1 protein [Spiroplasma citri]
          Length = 638

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 152/445 (34%), Gaps = 33/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +      +   RD       L + T        G+  WLP G      +   IRE++ 
Sbjct: 224 FEQVLFAYEERRERDHRKIGKDLEIFT-FDKLVGPGLPIWLPNGMALKKVLQEYIREKEW 282

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + +++++  SG +D Y + M     +N++  +  P        ++    
Sbjct: 283 EYDFTEVDTPVIGTSEMYKISGHWDHYQENMFAPMAQNNEISVLRPMACPHHIAVYNYKQ 342

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +  +  R E      G+ R R   + D++ F L  +  K  + + F   
Sbjct: 343 RSYRELPLRIAEHAILHRYETSGSLTGLERVRMMQLTDSHIF-LRHDQLKEEFKRCFKLI 401

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   L +                        D    + +   + M         +  D
Sbjct: 402 NEVLTDLKITVDYYSLSLR--------------DPANKEKYYDDNQMWNHAEQMLQEALD 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + +  +     A  A      + ++  +L     VS    +    F    K++L    +
Sbjct: 448 DLKIPYVPMIGEA--AFYGPKLDIQIKTALNHEITVSTLQFD----FLLPKKFNL----S 497

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    G K   V +    IG      A++     G   + P  +AP +I +I +   ++ 
Sbjct: 498 YIDETGAKAMPVMLHRGLIGTYERFIAILLEQTKG---VLPFWLAPKQIVIIPVN--NEH 552

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   +++ +  K+      DD  E++  +   A +   P Q+++G +      +  + 
Sbjct: 553 HLEYVNELHQQFKKLKLRTTIDDRDERLSYKIREAQVAKIPYQIVIGDQERDKKMITYRI 612

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                +   + ++ I   + +  N 
Sbjct: 613 YGQEDQITTTFDKFIILINEQIINK 637


>gi|330508032|ref|YP_004384460.1| prolyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928840|gb|AEB68642.1| prolyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 487

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 155/436 (35%), Gaps = 72/436 (16%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
           H+L++   +I      KG+  W P G     NV  IIR+  +     E   P +    + 
Sbjct: 32  HELLMTGEIIDNRYPVKGMCVWFPFGFAIKKNVYGIIRQLLDP-DHQETLFPLMIPENEF 90

Query: 80  WVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     + +E+  +        +  +   PT E  +  +F+  I+S+ ++P   YQI
Sbjct: 91  MKEAQHIKGFEEEVYWVTCGGTTPLEVKLALRPTSETAIYPMFKLWIRSHADMPLRIYQI 150

Query: 136 QLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E +    ++R RE    K+A++   T E +          Y   + RL   +IP
Sbjct: 151 VNTFRYETKHTRPLIRLREITSFKEAHTVHATWEEAAEQVEVAIKRYSEFYRRL---AIP 207

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                 P     S +    AD                                       
Sbjct: 208 FLVSRRP-----SWDKFPGAD--------------------------------------- 223

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                         D +  + +    G       + G+ ++     T++  DG+   V  
Sbjct: 224 ---------YTTAIDVIMPDGKTLQVG----TAHHLGSTFAKTYEITYEAEDGEQKLVNQ 270

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLS 373
             YGI + R +AA+I    D KG+  P  VAP ++ ++ I   D +   + C  +   L 
Sbjct: 271 TCYGI-SERCIAALISVHGDDKGLALPWEVAPVQVVIVPILLGDKEKVLEVCRDLLRILQ 329

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V  D   E+ G++F   ++ G P+++ VG + +    V +  R    +  +  E 
Sbjct: 330 QAGIRVELDTSDERPGAKFYKWEMKGVPIRLEVGPRDIEKGVVTVVRRDA-EKLTLPREG 388

Query: 434 VINYASHRFSNNRPVL 449
           +           +  L
Sbjct: 389 LAQALVREAERLQAAL 404


>gi|325571083|ref|ZP_08146655.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156168|gb|EGC68354.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 569

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 147/234 (62%), Gaps = 1/234 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  +IREE
Sbjct: 1   MKQSKCLIPTLRETPSDAETLSHQLLVRAGYIRQVAAGIYVYLPLAQRVLEKIKRVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM++P+L   + W ESGR   YG+ + RL DRN++ ++ GPTHEE  T + ++
Sbjct: 61  LAEIDAVEMAMPSLLPYEPWKESGRASLYGESLYRLTDRNEREIVLGPTHEEPFTTLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +YN+  ++
Sbjct: 121 EITSYKRLPLSLYQIQTKYRDEQRPRFGLIRSREFIMQDGYSFHADEASLDQTYNRYEMA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  I  R G++   +  ++G +GG  S EF+ L+  GE ++ C     D+    
Sbjct: 181 YHAILKRCGIEYRAVVGDNGLMGGRDSKEFLALSGIGE-ELICYSTESDYVANW 233



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 3/182 (1%)

Query: 265 EKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P+ K      RGIEVGHIF  GTKYS    AT    +G +  + MG YG+G  
Sbjct: 387 VQEGDPSPDGKGTLTFTRGIEVGHIFKLGTKYSEAQEATVVDENGDEQPIIMGCYGLGVS 446

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R+++ ++E   +  GI WP  +APF + +I     D       E++   +++VG  V  D
Sbjct: 447 RLLSTIVEQYGNEFGIDWPQEIAPFDVHIIQTSIEDSYQNALSEEVEEMMNQVGYQVLVD 506

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D  E+ G +FA ADL+G P+++ +G K V    VEIK + TG   ++  EEV +  +   
Sbjct: 507 DRNERAGVKFADADLIGCPIRLTIGKKAVE-GIVEIKIKHTGATVEVRKEEVASTLTILL 565

Query: 443 SN 444
           +N
Sbjct: 566 AN 567


>gi|225550529|ref|ZP_03771478.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379683|gb|EEH02045.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 580

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 164/446 (36%), Gaps = 38/446 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD       L L T   +   +G+  WLP G      V   I E + +  
Sbjct: 168 YLVDLQERKERDHRKIGKDLNLFT-FNNLAGQGLPIWLPNGTIIKSQVQKFINEVEFQFN 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y   +      +++ +I  P      T ++ + ++SY
Sbjct: 227 FDTVITPILGSIDLYKTSGHWDHYKDNIFSPVQIDNEVLILRPMTCPHHTLVYSNELRSY 286

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G  R RE +++D + F   P+  +H     F      
Sbjct: 287 RSLPIRLSEHSILHRYESSGGLTGFERVREMILEDCHVF-CRPDQIEHEVINAFKMIQEA 345

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG+K+  +                 L D  + + +     M             ++ 
Sbjct: 346 QEGLGIKTFEIHLS--------------LNDPNDKEKYYDDPQMWEHSQ---NALRKMLK 388

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            + I  +     AA      +       + K V  R I V  I      + LP   + ++
Sbjct: 389 DHKIPYKEMVGEAAFYGPKIDF------QVKTVLNRIITVSTI---QLDFLLPNRFNLSY 439

Query: 303 KGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +     M   GI      + A++     G   + P  ++P ++ +I +   + + 
Sbjct: 440 INENNEQSTPVMIHIGIIGTYERLLAILLEQTKG---VLPLWLSPVQVVIIPVN--ENLH 494

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKH 420
            D  +++ A+L K       D   E++  +   A +   P Q++VG + + + K V  + 
Sbjct: 495 ADYAKELNAKLRKHLVRSSLDLRNERLSKKIREAQIQKIPYQIVVGDEEIKNDKMVTYRR 554

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +     +S+++ I    +   + +
Sbjct: 555 YGSEETTTVSVDDFIKVLENDIRSKK 580


>gi|300741607|ref|ZP_07071628.1| threonine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380792|gb|EFJ77354.1| threonine--tRNA ligase [Rothia dentocariosa M567]
          Length = 677

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 146/443 (32%), Gaps = 32/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +        G+    P G      +   +R      
Sbjct: 253 EYKHRIAEAERRDHRRLGKELDLFS-FPKNIGPGLPVIHPKGGVIKREMEDYVRARHIAE 311

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +S P +   DL+  SG    Y   M    + ++        +  +  +I+RS  +S
Sbjct: 312 GFQYVSTPHISKEDLFYTSGHLPYYADGMFPAMELDNGNYRLKAMNCPMHNEIYRSRGRS 371

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F++    +RDE      G+ R R     D++S+ +T E +      +    L 
Sbjct: 372 YRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSY-VTKEQAPDEVRHLLNFMLS 430

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G+    +   +    GD   +FI   +  E      +                  
Sbjct: 431 LLEDFGMTDFYLELSTRDTEGDKKDKFIGTDEQWEQATAVLEQV--------------AK 476

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +       A      + +  D++    ++S    +      FG +Y        +
Sbjct: 477 ETGLELVPDPGGAAFYGPKISVQAKDAIGRTWQMSTVQYDFNQPSRFGLEY--------Q 528

Query: 304 GADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG     V + S   G++     V+   + G    W   ++P ++  + +    +   
Sbjct: 529 AADGSIQEPVMIHSAKFGSIERFLGVLTEHYAGAFPAW---LSPVQVICVPVA---EAFN 582

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I  +L + G  V  D   ++   +   A     P  +I G +      V  + R 
Sbjct: 583 DYMTEIADKLREQGVRVEVDYGSDRFTKKIRTASTEKVPFILIAGGEDAEAGAVSFRFRG 642

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + ++E +    +   N 
Sbjct: 643 NKQENGVPVDEAVVRIVNHIRNR 665


>gi|225574947|ref|ZP_03783557.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037794|gb|EEG48040.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
          Length = 667

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 154/451 (34%), Gaps = 45/451 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIRE- 59
           K +L  L+E    A+   H  + R   +        +G+   +P G   L  +   I + 
Sbjct: 243 KAYLEQLEE----AKKRDHNKLGREMELFTTVDVIGQGLPLLMPKGVIILKELQRWIEDL 298

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDI 117
           E N  G I    P +  +DL+  SG +D Y   M  L D   + +     P        +
Sbjct: 299 EDNEWGYIRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDKEVYALRPMTCPFQYYV 358

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +++   SYR LP  + +    FR+E      G+ R R+F + +A+     P+     + K
Sbjct: 359 YKASQHSYRELPLRYSETSTLFRNEDSGEMHGLTRVRQFTITEAHLI-TRPDQIDEEFKK 417

Query: 177 MFVSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                  +   LGL   +  R                  D   T+ +           ++
Sbjct: 418 CVQLAKFVLTTLGLQDDVTYRLSK--------------WDPNNTEKYIGDAQYWETSQNK 463

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             +  + + L+ +  +     A      + +  +   +   +    ++            
Sbjct: 464 MRELLNELELDFV--EADGEAAFYGPKLDIQAKNVYGKEDTMITIQLDFALAEQ------ 515

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   +G+      +    +G      A +   + G    W   + P ++ ++ I
Sbjct: 516 --FHMYYIDENGEKKMPFIIHRTSMGCYERTLAWLIEKYAGLFPTW---LCPEQVRVLPI 570

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D   ++ A+L   G     DD  E+IG +   + L   P  ++VG+K   + 
Sbjct: 571 ---SEKYLDYANQVNAQLKANGIRSSVDDRSEKIGYKIRESRLQKVPYMLVVGAKEEQEE 627

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           KV ++ R  G      L+  I++        
Sbjct: 628 KVSVRSRYLGDEGMKDLKSFIDHICEEIRTK 658


>gi|303238788|ref|ZP_07325320.1| prolyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593667|gb|EFL63383.1| prolyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 481

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 155/430 (36%), Gaps = 67/430 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  ++   S +G     P G    +N+   +      TG   + +P      L   E 
Sbjct: 28  VKKADLVDYSSVRGCMIIRPYGYAIWENIQKTLDARFKETGHENVYMPMFIPESLLQKEK 87

Query: 84  GRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     + +       PT E +  D + + I+SYR+LP  + Q     
Sbjct: 88  DHVEGFAPEVAWVTHGGQEELAEKLCVRPTSETLFCDHYSNIIQSYRDLPKLYNQWCSVV 147

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+ EFL ++ ++   T E ++    KM    L ++              
Sbjct: 148 RWE-KTTRPFLRTVEFLWQEGHTAHATAEDAQEETIKM----LNVYAD------------ 190

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                 FC K      I  + TD +      +     +      
Sbjct: 191 ----------------------FCEKVLAIPVIKGQKTDKEKFAGAKATFTIESL----- 223

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G    FG  ++      +   + +  YV   S+G+
Sbjct: 224 ----------------MHDGKALQSGTSHNFGDGFAQAFGIQYTDQNNQLQYVHQTSWGV 267

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + R++  +I    D  G++ P  +AP ++ +I +  H +   +    I  RL+  G  V
Sbjct: 268 -STRLIGGIIMVHGDDNGLVLPPKIAPIQVVVIPVSQHKEGVLEKAYAIRDRLAAKGIRV 326

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +++  ++ G P+++ +G K +  ++  +  R++  +  +SL+E+    S
Sbjct: 327 KIDDSDKMPGWKYSEYEMKGVPIRLEIGPKDIEKNQAVLVTRVSREKLFISLDELEGKVS 386

Query: 440 HRFSNNRPVL 449
                 +  L
Sbjct: 387 ETLDKVQDEL 396


>gi|258653602|ref|YP_003202758.1| threonyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258556827|gb|ACV79769.1| threonyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 699

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 137/458 (29%), Gaps = 54/458 (11%)

Query: 8   LPILQENPRDAEIASHKLM-LRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   Q+   +AE   H+ + +   +     +   G+  + P G      +    R +   
Sbjct: 252 LEAYQQWHAEAERRDHRKLGVELDLFSFPDELGSGLPVFHPKGGIIRKELEDYSRAKHIA 311

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHE 111
            G   +  P +  A L+  SG  D Y   M      +             +     P + 
Sbjct: 312 AGYSFVYTPHITKAKLYEISGHLDWYADGMFPAMHLDAELGPDGEVRKPGQDYYLKPMNC 371

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IFRS  +SYR LP   ++    +R E      G+ R R     DA+ F  T E  
Sbjct: 372 PMHDLIFRSRGRSYRELPLRMFEFGAVYRYEKSGVIHGLTRVRGMTQDDAHIF-CTREQM 430

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMD 229
           +     +    L +    GL    +   +        + E   +A     +V        
Sbjct: 431 RDELTSLLRFVLELLADYGLDDYYLELSTRNEDKYVGTDENWAVATETLAEVARESGLDL 490

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P                       A      + +  D+L    ++S   ++    F 
Sbjct: 491 VDDPG--------------------GAAFYGPKISVQARDALGRTWQMSTIQLD----FN 526

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       + G DG K   V +     G++     V+   + G    W   ++P +
Sbjct: 527 LPERF----ELEYTGPDGSKQRPVMIHRALFGSVERFFGVLTEHYAGAFPAW---LSPVQ 579

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  I +        D  + +  +L   G     D   +++  +         P  ++ G 
Sbjct: 580 VVGIPVA---DAFGDYLQDVVDQLVARGIRAEADHSDDRMQKKIRTHTTAKVPFLLLAGE 636

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           K V+   V  + R       +     +          R
Sbjct: 637 KDVAAGAVSFRFRDGTQINGVPAAAAVQAIVDWVGQRR 674


>gi|171920625|ref|ZP_02695822.2| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188524282|ref|ZP_03004325.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867906|ref|ZP_03079904.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273446|ref|ZP_03205982.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554092|ref|YP_002284982.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|238065120|sp|B5ZC42|SYT_UREU1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171903344|gb|EDT49633.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|195660016|gb|EDX53396.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660383|gb|EDX53642.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198249966|gb|EDY74746.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541593|gb|ACI59822.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 580

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 164/446 (36%), Gaps = 38/446 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD       L L T   +   +G+  WLP G      V   I E + +  
Sbjct: 168 YLVDLQERKERDHRKIGKDLNLFT-FNNLAGQGLPIWLPNGTIIKSQVQKFINEVEFQFN 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y   +      +++ +I  P      T ++ + ++SY
Sbjct: 227 FDTVITPILGSIDLYKTSGHWDHYKDNIFSPVQIDNEVLILRPMTCPHHTLVYSNELRSY 286

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G  R RE +++D + F   P+  +H     F      
Sbjct: 287 RSLPIRLSEHSILHRYESSGGLTGFERVREMILEDCHVF-CRPDQIEHEVINAFKMIQEA 345

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG+K+  +                 L D  + + +     M             ++ 
Sbjct: 346 QEGLGIKTFEIHLS--------------LNDPNDKEKYYDDPQMWEHSQ---NALRKMLK 388

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            + I  +     AA      +       + K V  R I V  I      + LP   + ++
Sbjct: 389 DHKIPYKEMVGEAAFYGPKIDF------QVKTVLNRIITVSTI---QLDFLLPNRFNLSY 439

Query: 303 KGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +     M   GI      + A++     G   + P  ++P ++ +I +   + + 
Sbjct: 440 INENNEQSTPVMIHIGIIGTYERLLAILLEQTKG---VLPLWLSPVQVVIIPVN--ENLH 494

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKH 420
            D  +++ A+L K       D   E++  +   A +   P Q++VG + + + K V  + 
Sbjct: 495 ADYAKELNAKLRKHLVRSSLDLRNERLSKKIREAQIQKIPYQIVVGDEEIKNDKMVTYRR 554

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +     +S+++ I    +   + +
Sbjct: 555 YGSEETTTVSVDDFIKVLENDIRSKK 580


>gi|328773873|gb|EGF83910.1| hypothetical protein BATDEDRAFT_18299 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 706

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 139/421 (33%), Gaps = 38/421 (9%)

Query: 7   FLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +AE   H+ +         +  S G   +LP G +  + +  + R E  +
Sbjct: 288 LMKEYEKFVEEAEKRDHRKIGTEQELFFFNDFSPGSAFFLPHGTRIYNTLIDLQRSEYRK 347

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +  LW  SG + +Y ++M  L D   +     P +      IF++  +
Sbjct: 348 RGFHEVVTPNMYNTKLWERSGHWANYHEDMFAL-DVEKEKFALKPMNCPGHCLIFKNRDR 406

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP       +  R+E      G+ R R F   DA+ F    +              
Sbjct: 407 SYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-CRLDQIGTEMEGCLDFLK 465

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G     ++  + P            A+    +              +       
Sbjct: 466 HIYSIFGFTF-ELKLSTRPENFLGEIATWDQAEKLLEEALNKFGSTWSLNEGDG------ 518

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      +  + D+L    + +   ++    F    ++ L      
Sbjct: 519 --------------AFYGPKIDIVISDALRRRHQCATIQLD----FQLPDRFELEYRTDD 560

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             A+     V +    +G++  + A++  +  GK   WP  ++P ++ ++ I        
Sbjct: 561 P-ANQFSRPVMIHRAILGSVERMIAILTENFAGK---WPFWLSPRQVIVVPIAV---PFN 613

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   K+  +L   G     D     +  +   A++  +    +VG +      V  ++R 
Sbjct: 614 EYATKVANQLYAAGLYAEADVSDLTLKKKIRNAEIAQWNFIFVVGEEEEKSDSVNCRNRD 673

Query: 423 T 423
            
Sbjct: 674 D 674


>gi|212716449|ref|ZP_03324577.1| hypothetical protein BIFCAT_01373 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660702|gb|EEB21277.1| hypothetical protein BIFCAT_01373 [Bifidobacterium catenulatum DSM
           16992]
          Length = 611

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/283 (35%), Positives = 153/283 (54%), Gaps = 1/283 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   
Sbjct: 185 YERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEP 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           + I  ++       P      + ++ +  +   + R   R  E
Sbjct: 245 EAIDFSNTPAAEKRPTPNAETI-DQMVEFANANHPRSDGRAWE 286



 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 4/232 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +TGE   +     +           +  +    +V           +    +  D  P+ 
Sbjct: 377 ETGEALRYLIDAHIARGSAWFTGADEAGVDYYDLVYGRDFEADGVVEAVQVRHGDMSPDG 436

Query: 275 KRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ 
Sbjct: 437 SGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETH 496

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
           HD KG+ WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +
Sbjct: 497 HDEKGLAWPAIIAPAQVHVVA-TGKDAAAFEAAERLIAELEAKGIEVIFDDRKKVSPGVK 555

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  A+L+G PL  + G   V++  +E++ R     E + + +     + R +
Sbjct: 556 FKDAELIGVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAAQMIAERVA 607


>gi|302518003|ref|ZP_07270345.1| threonyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426898|gb|EFK98713.1| threonyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 658

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 135/438 (30%), Gaps = 40/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-FPEEVGPGLAVFHPKGGIIRRAMEDYSRRRHEEEGYEFVYS 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHTTKGALFQKSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ RSR F   DA+ +  T E      +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   +        S E    A     QV   +     P P               
Sbjct: 432 LDDFYLELSTKDEKKFVGSDEVWEEATATLQQVAEKQGLPLVPDPG-------------- 477

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG- 307
                   A      + +  D++    ++S   ++    F    ++      ++  ADG 
Sbjct: 478 ------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLPERF----DLSYTAADGS 523

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   V +     G++    AV+   + G     P  +AP +   I +           ++
Sbjct: 524 RQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPVG---DAHVPYLKE 577

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A   + G  V  D   +++  +         P  VIVG   ++   V  +HR      
Sbjct: 578 FAAEARRKGLRVDVDASSDRMQKKIRNHQKQKTPFMVIVGDDDMNAGTVSFRHRDGSQEN 637

Query: 428 DMSLEEVINYASHRFSNN 445
            +  +E I          
Sbjct: 638 GIPKDEAIAKLLDVVERR 655


>gi|86158405|ref|YP_465190.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123736663|sp|Q2IJC0|SYT_ANADE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|85774916|gb|ABC81753.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 650

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 144/446 (32%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T   H+++ G   WLP G    + +   +R    + G 
Sbjct: 238 LAKLEEVKKRDHRRLGPQLGLFT--FHEYAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---------RNDKAMIYGPTHEEVMTDI 117
            E+  P L +  LW  SG +  Y + M  + D          +  +    P +      I
Sbjct: 296 QEVKTPLLFNKRLWETSGHWGKYRENMFLVVDSESDPALALEDRCSFSLKPMNCPSHHLI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +R   +SYR LP  ++      R+E      G+ R R+F   DA+ + L  E       +
Sbjct: 356 YRMDKRSYRELPVRYFTTDALHRNEASGSLGGLTRVRQFEQDDAHIY-LREEQVTDEVLR 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +F     ++   GL        + P            A+    +   +        P + 
Sbjct: 415 IFELMKVVYGAFGLGF-EATFSTRPEQRIGDDALWDRAEALLRKSLDATGLKWTLNPGDG 473

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   I +                       DSL    +     ++             
Sbjct: 474 AFYGPKIDMLVT--------------------DSLGRRWQTCTIQLDYAAPER------- 506

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               TF G D K+H  V +     G+     A++   + G    W   +AP +  ++ + 
Sbjct: 507 -FDLTFVGEDNKEHRPVVIHRAIYGSFERFIAILTEHYAGAFPAW---LAPVQARVVTV- 561

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      +  A L   G  V  D   +++G++   A L   P  ++VG K V    
Sbjct: 562 --SDRFDAWAREAAAALQARGWRVEVDGSSDKLGAKIRNAQLAKIPFTLVVGEKEVEARG 619

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V  +       + M LE      +  
Sbjct: 620 VSPRRHGGEDLKTMPLETFAELMARE 645


>gi|238879230|gb|EEQ42868.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida albicans
           WO-1]
          Length = 455

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 154/449 (34%), Gaps = 63/449 (14%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              +  I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P 
Sbjct: 30  TQSNHVISSKQLLYTTD---PTSPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPL 86

Query: 74  LQSADLWVESGRYDSYGKEMLRL----------AD-RNDKAMIYGPTHEEVMTDIFRSHI 122
           +    LW +SG +D+Y  +M ++           D   +      P +      IF    
Sbjct: 87  IFKTKLWKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMNCPSHCMIFAKFD 146

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP  +       R+E      G+ R R F   D + F  + +             
Sbjct: 147 RSYQELPVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF-CSMDQIDGEIKNTLELI 205

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              ++  G+  I     + P                    F  +        S+  +  +
Sbjct: 206 KDTYNVFGINEIEFYLSTRP-----------------EDKFIGEIETWDIAESQLKNVLN 248

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +            A      +  L D+  +  +V    ++    F    ++       
Sbjct: 249 STAGEGNWATREGDGAFYGPKIDVLLKDAFNKKHQVGTIQLD----FQLPNRF----ELK 300

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DGK     + +     G++    A++   + GK   WP  + P +  ++ I    +
Sbjct: 301 YVGEDGKRDHQPILVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQALIVPIN---E 354

Query: 360 VCRDACEKIYARLS--------------KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 E++  +LS                   V  D  GE +G++   A   G+   ++
Sbjct: 355 SHVPVAEELQKKLSGDIVSCDNAIAPLTGFNFHVDIDKRGETVGARTKDAIQKGYSYLIM 414

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K +++    ++ R     ++M+ +E+
Sbjct: 415 IGDKDIANGTFAVRSRDDRKIKNMTSDEI 443


>gi|315123806|ref|YP_004065810.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017528|gb|ADT65621.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 457

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 154/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 50  KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 108

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 109 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 167

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 168 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 226

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 227 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALNEQGLKYGIDEGGGAFYGPK 285

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G +      ++LP     
Sbjct: 286 IDIKITDA---------------------------LKRKWQCGTV---QVDFNLPSRFKL 315

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 316 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 369

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V    V ++
Sbjct: 370 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVVKRSVALR 429

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 430 DRRAKEQKNLSLDEFIKLVKEKMSE 454


>gi|255947314|ref|XP_002564424.1| Pc22g03830 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591441|emb|CAP97671.1| Pc22g03830 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 741

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 143/438 (32%), Gaps = 25/438 (5%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H  + +        + S G    LP G K  + + +++R E  + G  E+  P 
Sbjct: 316 EAEKRNHLRIGKEQELFFFDEASPGCPFLLPNGTKIFNQLQSLLRSEYRKRGYQEVQTPN 375

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    +W  SG +  Y  +M +L D   +     P +      +F    +SYR LP    
Sbjct: 376 MYDVGVWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFILFGHRERSYRELPMRIA 434

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E      G+ R R+F   D +    +          +F     I+   G   
Sbjct: 435 DFGVLHRNEASGALSGLTRCRKFQQDDCHVVLAS-HQIMSEVEGLFDFLQSIYGLFGFTF 493

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++  + P     + E    A+    +        D+ I   +  F       +I +  
Sbjct: 494 -KLKLSTRPEKYMGALETWDHAEDQLKKALTKFKGDDWTINEGDGAFYGPKIDITIADAI 552

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              +         +L    P N ++     E           +         A G+   V
Sbjct: 553 QREFQCA----TIQLDYQAPINFKMEYMTKEQSQAEQPKEGETKGDEL----APGRARPV 604

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    IG+      ++     GK   WP  ++P +I ++ +        D  E++   L
Sbjct: 605 VIHRAIIGSFERFLGILIEHFGGK---WPFWISPRQILIVPVMP---AVNDYAEELQKIL 658

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE----D 428
                 V  D  G  +  +     L  +    +VG+       V +++R     +     
Sbjct: 659 QGDKLSVDIDISGNTMQKKIRTGQLAQYNFIFVVGASERETRSVNVRNRDDPATQKQGVM 718

Query: 429 MSLEEVINYASHRFSNNR 446
           + LEEV           R
Sbjct: 719 VPLEEVRIKLKALRKERR 736


>gi|313904501|ref|ZP_07837877.1| threonyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313470643|gb|EFR65969.1| threonyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 591

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 153/438 (34%), Gaps = 43/438 (9%)

Query: 8   LPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++  R+A    HK +       M  + + G+  WLP G K  +++ +  R      
Sbjct: 170 LKEFKKFLREAAERDHKKLGPQQELFMFDETAPGMPYWLPRGWKLFNSLLSFWRGIHEEH 229

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY---GPTHEEVMTDIFRSH 121
           G  E+S P L ++ LW  SG +  Y   M  +    +    Y    P +      +++S 
Sbjct: 230 GYQEISGPILSNSKLWQTSGHWGHYKDNMFIIPGEKEDESDYYAAKPMNCPNAILVYKSR 289

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LPF   Q+    R E      G+ R + F   DA+   +T +        +   
Sbjct: 290 LRSYRDLPFRVAQVDNIHRKEKSGELNGLFRVQMFRQDDAHIL-VTEDQIADEIKDIMSI 348

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +I+   GL        + P            A+    ++                   
Sbjct: 349 ATQIYGTFGLSY-GAELSTRPDDFMGDIAVWDKAEASLKEILND---------------- 391

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +      E      A      + K+ D+L    ++    ++    F     +      
Sbjct: 392 --VYGEGNYEVNEGDGAFYGPKIDLKMKDALGREWQMGTIQLD----FQLPLNF----DM 441

Query: 301 TFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG     V +     G++     ++  ++      W   ++P+++ ++ I+    
Sbjct: 442 KYAAQDGTVKQPVMIHRAIFGSLERFIGILIENYKASFPFW---LSPYQVGVVPIRT--- 495

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +K+   L   G  V  D   + +  +         P  ++VG K  S+  V I 
Sbjct: 496 EHNEYAKKVVDALKAAGIRVEVDYADKNMNEKIKAFKTYHDPYIIVVGDKEASEGTVSIT 555

Query: 420 HRLTGIR-EDMSLEEVIN 436
            R    +  D+SLE+++ 
Sbjct: 556 VRGQKQQLHDVSLEKLVE 573


>gi|185179115|ref|ZP_02964840.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024051|ref|ZP_02996803.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518364|ref|ZP_03003871.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225551314|ref|ZP_03772260.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209012|gb|EDU06055.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188019085|gb|EDU57125.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188998237|gb|EDU67334.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225379129|gb|EEH01494.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 580

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 163/444 (36%), Gaps = 34/444 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD       L L T   +   +G+  WLP G      V   I E + +  
Sbjct: 168 YLVDLQERKERDHRKIGKDLNLFT-FNNLAGQGLPIWLPNGTIIKSQVQKFINEVEFQFN 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y   +      +++ +I  P      T ++ + ++SY
Sbjct: 227 FDTVITPILGSIDLYKTSGHWDHYKDNIFSPVQIDNEVLILRPMTCPHHTLVYSNELRSY 286

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G  R RE +++D + F   P+  +H     F      
Sbjct: 287 RSLPIRLSEHSILHRYESSGGLTGFERVREMILEDCHVF-CRPDQIEHEVINAFKMIQEA 345

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG+K+  +                 L D  + + +     M     +       +  
Sbjct: 346 QEGLGIKTFEIHLS--------------LNDPNDKEKYYDDPQMWEHSQNTLRKM--LKD 389

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                ++     A      + ++   L     VS   ++    F    +++L    ++  
Sbjct: 390 HKIPYKEMVGEAAFYGPKIDFQVKTVLNRIITVSTIQLD----FLLPNRFNL----SYIN 441

Query: 305 ADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +     M   GI      + A++     G   + P  ++P ++ +I +   + +  D
Sbjct: 442 ENNEQSTPVMIHIGIIGTYERLLAILLEQTKG---VLPLWLSPVQVVIIPVN--ENLHAD 496

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRL 422
             +++ A+L K       D   E++  +   A +   P Q++VG + + + K V  +   
Sbjct: 497 YAKELNAKLRKHLVRSSLDLRNERLSKKIREAQIQKIPYQIVVGDEEIKNDKMVTYRRYG 556

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +     +S+++ I    +   + +
Sbjct: 557 SEETTTVSVDDFIKVLENDIRSKK 580


>gi|153950997|ref|YP_001397450.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166223330|sp|A7H1S0|SYT_CAMJD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|152938443|gb|ABS43184.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 602

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 155/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLAIIEEAKKRDHRKLGIELKLFT-FNDEIGGGLPIWLGNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      +++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKVYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|295839903|ref|ZP_06826836.1| threonine-tRNA ligase [Streptomyces sp. SPB74]
 gi|197696732|gb|EDY43665.1| threonine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 658

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 135/438 (30%), Gaps = 40/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-FPEEVGPGLAVFHPKGGIIRRAMEDYSRRRHEEEGYEFVYS 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHTTKGALFQKSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ RSR F   DA+ +  T E      +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   +        S E    A +   +V   +     P P               
Sbjct: 432 LDDFYLELSTKDEKKFVGSDEVWEEATSTLAEVAEKQGLPLVPDPG-------------- 477

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG- 307
                   A      + +  D++    ++S   ++    F    ++      ++  ADG 
Sbjct: 478 ------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNLPERF----DLSYTAADGS 523

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   V +     G++    AV+   + G     P  +AP +   I +           ++
Sbjct: 524 RQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPVG---DAHVPYLKE 577

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A   K G  V  D   +++  +         P  +IVG   ++   V  +HR      
Sbjct: 578 FAAEARKQGLRVDVDASSDRMQKKIRNHQKQKTPFMIIVGDDDMNAGTVSFRHRDGSQEN 637

Query: 428 DMSLEEVINYASHRFSNN 445
            +   E +          
Sbjct: 638 GIPKGEALAKLRDVVERR 655


>gi|307721910|ref|YP_003893050.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980003|gb|ADN10038.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 602

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 158/442 (35%), Gaps = 51/442 (11%)

Query: 13  ENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +AE   H+ +     +     +   G   WLP G +    + +++ +   + G   
Sbjct: 199 EQLAEAEKRDHRKIGNEMKLFTFREEVGAGFPIWLPAGGRLRARLESLLFKAHRKRGYEP 258

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +  +DLW+ SG Y +YG+ M      ++      P +      ++   + SYR+L
Sbjct: 259 VRGPEMLRSDLWMTSGHYQNYGENMY-FTHIDELEFGVKPMNCVGHIKVYEDELHSYRDL 317

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +++  +  R E      G+ R REF   DA+ F    +  +    ++     +I   
Sbjct: 318 PIKYFEYGVVHRHEASGALHGLFRVREFTQDDAHIF-CRADQIEEQIIEVVDFVDKIMST 376

Query: 188 LGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                  M +      +G D   E    A             +D    +      DI   
Sbjct: 377 FEFDYKMMISTKPEKAVGDDKVWEISTQALKNAMDKNELAYEIDEGGGAFYGPKIDIKIT 436

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFK 303
           ++I                               R  + G +      ++LP      + 
Sbjct: 437 DAIG------------------------------REWQCGTV---QLDFNLPERFKLEYN 463

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G +  K   V +    +G+      ++   + G+    P  VAP +++++ +    +  +
Sbjct: 464 GEENDKIQPVMIHRAILGSFERFIGILTEHYAGEF---PMFVAPTQVAIVPVA---ETHK 517

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +  +L  +  D       + +  +   A+    P+ V++G + +++  V I+ R 
Sbjct: 518 EYAKLLSDKLIDINADSEIYAKNDSLNKRIRTAEKTRVPMIVVIGDEEIANKTVAIRDRR 577

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           T  + ++S EE +     + + 
Sbjct: 578 TREQYNLSEEEFLKLIQTKINE 599


>gi|159901383|ref|YP_001547630.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894422|gb|ABX07502.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 570

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/227 (44%), Positives = 141/227 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK      +E P DAE+ SH L++R G + Q S GIYS LPL  ++   ++ IIREE
Sbjct: 1   MRMSKLATSTTKEAPNDAELISHSLLVRAGYVKQQSAGIYSLLPLCVRSTQKISQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+ +P + SADLW E+GRY+   +E+LR  DRN+K M+   THEEV+TDI R 
Sbjct: 61  MDAIDGQELLMPVVTSADLWRETGRYEGVTEELLRFKDRNNKDMVLNMTHEEVVTDIMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSYR +P   YQIQ K+RDE RPR G++R REF MKDAYSF  T E     Y ++  +
Sbjct: 121 YIKSYRQMPVMVYQIQTKYRDEARPRGGIIRLREFTMKDAYSFHATIEDLDQYYEQVLNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI+ R GL    ++++ G +GG ++HEF+ +   GE  +      
Sbjct: 181 YKRIYQRCGLPVEVVQSDPGMMGGKIAHEFMAVTPAGEDTLILCPSC 227



 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 1/175 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    S        AR IEVG+IF  GTKYS  M   F    G+     MG YGIG  R+
Sbjct: 384 EGQPCSRCGAPLTIARAIEVGNIFKLGTKYSAAMKCVFANEKGEMQPAIMGCYGIGVQRI 443

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDD 383
           +A++IE  +D +G++ P +VAP+++ ++          +   +++Y+ L   G  V  DD
Sbjct: 444 LASLIEKFNDARGMMLPITVAPYQVHVVGTDYQSNAETKSVADQLYSDLQAQGVTVLLDD 503

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                G++F  ADL+G P+QVI+GS+ + + + E+K R TG    ++L +++++ 
Sbjct: 504 RDVNAGNKFGDADLIGNPIQVIIGSRGLKNGQAEVKIRSTGETTMVALADLLSHV 558


>gi|154486903|ref|ZP_02028310.1| hypothetical protein BIFADO_00736 [Bifidobacterium adolescentis
           L2-32]
 gi|154084766|gb|EDN83811.1| hypothetical protein BIFADO_00736 [Bifidobacterium adolescentis
           L2-32]
          Length = 611

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 138/234 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE
Sbjct: 5   LRMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + + 
Sbjct: 65  MASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +
Sbjct: 125 LYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +
Sbjct: 185 YERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEA 238



 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 4/233 (1%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           ++TG+   +     +           +  +    +V         T +    +  D  P+
Sbjct: 376 SETGDALRYLIDAHVARGSAWFTGADEQDVDYYDLVYGRDFEADGTVEAVQVRHGDMSPD 435

Query: 274 NKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+
Sbjct: 436 GSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAET 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            HD KG+ WP  +AP ++ ++     D    +A E++   L   G +V +DD  +   G 
Sbjct: 496 HHDEKGLAWPAVIAPAQVHVVA-TGKDAAAFEAAEQLIGELEAKGIEVIFDDRKKVSPGV 554

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F  A+L+G P+  + G   V++  +E++ R     E + + +     + R +
Sbjct: 555 KFKDAELIGVPIIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAAQAIADRVA 607


>gi|313677792|ref|YP_004055788.1| prolyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312944490|gb|ADR23680.1| prolyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 491

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 163/445 (36%), Gaps = 85/445 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++L+ +  +    + +G     P G    + +   + +    TG      P       L 
Sbjct: 17  NELVKKADLAENSAVRGCMIIKPYGFSIWEKMQRELDDMFKETGHQNAYFPLFIPKSYLS 76

Query: 81  VESGRYDSYGKEMLRLA------DRN------------DKAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE   +       D N            ++ +I  PT E ++ + +R+ +
Sbjct: 77  KEADHVEGFAKECAVVTHYRLKNDENGKGIVVDPDAKLEEELIVRPTSETIIWNTYRNWV 136

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T + +     +M   Y 
Sbjct: 137 QSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATKQEAIEETERMINIYA 195

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                 D + EF+ L                  I    ++ +  
Sbjct: 196 ----------------------DFAEEFMAL----------------PVIKGLKSESERF 217

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                                                + ++ G   + G  ++      F
Sbjct: 218 AGALETYCIEGL---------------------MQDGKALQAGTSHFLGQNFAKAFDVKF 256

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK  +V   S+G+ + R++ A++ +  D +G++ P  +AP ++ ++ I   D+  +
Sbjct: 257 ATKEGKQEFVWGTSWGV-STRLMGALVMAHSDDEGLVLPPRLAPIQVVIVPIYKTDEEQQ 315

Query: 363 ---DACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +  E +   L K    V +DD    + G +FA  +L G PL++ +G + + +  VE+
Sbjct: 316 KITEVAENLRKSLKKKRITVKFDDRDTHKPGFKFAEWELKGVPLRIAIGPRDLDNGTVEL 375

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
             R T  ++ +S+E + +       
Sbjct: 376 ARRDTKEKQTVSIEGIESVIEDTLE 400


>gi|116495061|ref|YP_806795.1| prolyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122263522|sp|Q038L9|SYP_LACC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116105211|gb|ABJ70353.1| Prolyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|327382602|gb|AEA54078.1| Prolyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327385800|gb|AEA57274.1| Prolyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 575

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 146/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S       
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDSSDYAA 231



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G++
Sbjct: 404 RGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+G
Sbjct: 464 WPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGYSVLVDDRNERPGVKFADSDLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            PL+V VG K V +  VE+K R TG   ++  EE+I+   
Sbjct: 524 VPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISSIK 562


>gi|68536143|ref|YP_250848.1| threonyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|123748238|sp|Q4JVC7|SYT_CORJK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|68263742|emb|CAI37230.1| thrS [Corynebacterium jeikeium K411]
          Length = 691

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/459 (15%), Positives = 147/459 (32%), Gaps = 51/459 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L +    +   G   + P G      +    R+   
Sbjct: 254 LAEYQTMMAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPDGGIVRLEMEEHSRKRHI 312

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTH 110
            +G   ++ P +   DL+ +SG  D Y   M      + +                 P +
Sbjct: 313 ASGYSFVNTPHVTKGDLFQKSGHLDFYADGMFPPMQLDGETDDEGNVTKPAQDYYAKPMN 372

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 373 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQ 431

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +     +    + +    GL    +   +  P     S E    +     +V       
Sbjct: 432 LEQELTTVLEFIISLLRDYGLDDFYLELSTKDPNKFVGSDEIWERSTEILERVATKSGLE 491

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P P+                      A      + +  D++    ++S   ++    F
Sbjct: 492 LVPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----F 527

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               +++L     +   DG K   + +     G++     V+   + G    W   +AP 
Sbjct: 528 NLPERFNL----EYTAPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPH 580

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++  I +        +  E   A L   G     D   +++  +         P  ++VG
Sbjct: 581 QVVGIPVA---DEFNEYLENFAADLRAQGIRAEVDTSDDRMQKKIRNHTTGKVPFMLLVG 637

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + V  + V  +         +  E+ +   S+  +  R
Sbjct: 638 GRDVEANAVSFRFLDGTQVNGVPREDALRIISNWIAERR 676


>gi|121612820|ref|YP_999926.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166223331|sp|A1VXT5|SYT_CAMJJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87250382|gb|EAQ73340.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 602

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 154/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E   +A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPEKAIGDDEIWEIATKALKEALNEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G +      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTV---QVDFNLPSRFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  +D  K   V +    +G+      ++     G+   +   +AP  + ++ I    +
Sbjct: 461 EYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPIG---E 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +  +A+    P+ +++G   V    V ++
Sbjct: 515 AHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVVKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|241948445|ref|XP_002416945.1| threonyl-trna synthetase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223640283|emb|CAX44533.1| threonyl-trna synthetase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 455

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 159/449 (35%), Gaps = 63/449 (14%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              +  I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P 
Sbjct: 30  TQSNHVISSKQLLYTTD---PTSPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPL 86

Query: 74  LQSADLWVESGRYDSYGKEMLRL------ADRN-----DKAMIYGPTHEEVMTDIFRSHI 122
           +    LW +SG +D+Y  +M ++       + +     +      P +      IF    
Sbjct: 87  IFKTKLWKKSGHWDNYKDDMFKVVGNDITKEEHTDNIEEHEYGLKPMNCPSHCMIFAKFD 146

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP  +       R+E      G+ R R F   D + F  + +             
Sbjct: 147 RSYQELPVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF-CSMDQIDGEIKNTLDLI 205

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              ++  G+  I     + P       +FI   DT +      K+ ++      N    +
Sbjct: 206 KDTYNVFGINEIEFYLSTRPE-----DKFIGNIDTWDIAELQLKNVLNATAGEGNWSIRE 260

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  L D+  +  +V    ++    F    ++       
Sbjct: 261 GDG------------AFYGPKIDVLLKDAFNKKHQVGTIQLD----FQLPNRF----ELK 300

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DGK     + +     G++    A++   + GK   WP  + P +  ++ I    +
Sbjct: 301 YVGEDGKRDHQPILVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQALIVPIN---E 354

Query: 360 VCRDACEKIYARLS--------------KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 E++  +LS                   V  D  GE +G++   A   G+   ++
Sbjct: 355 SHVPVAEELQKKLSGDIISCDKSIAPLTGFNFHVDVDKRGETVGARTKDAIQKGYSYLIM 414

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K +++    ++ R      +M+ +++
Sbjct: 415 IGDKDIANGTFAVRSRDDRKIRNMTSDDI 443


>gi|301066624|ref|YP_003788647.1| prolyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300439031|gb|ADK18797.1| Prolyl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 575

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 146/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S       
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDSSDYAA 231



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G++
Sbjct: 404 RGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+G
Sbjct: 464 WPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEDAGYSVLVDDRNERPGVKFADSDLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            PL+V VG K V +  VE+K R TG   ++  EE+I+   
Sbjct: 524 VPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISSIK 562


>gi|322709352|gb|EFZ00928.1| threonyl-tRNA synthetase, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 759

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/502 (16%), Positives = 161/502 (32%), Gaps = 95/502 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    A+   H+L+ +          S G   +LP G +  + +  ++RE+ 
Sbjct: 288 KEWLTYLEE----AKKRDHQLIGKNQKLFWFSPLSPGSPFFLPHGTRIFNAIQTMLREQY 343

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------------------- 96
              G  E+  P +    LW  SG +D Y ++M R+                         
Sbjct: 344 WMRGYDEVHSPLMYDVQLWKTSGHWDHYQEDMFRVPLKHTHGAAPDAPVASGPDAAKDAD 403

Query: 97  ----AD---------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                D           ++     P +      +F S  +SYR+LP+      +  R+E 
Sbjct: 404 KPAGKDGENAEVAKLEQERLFALKPMNCPGHALMFASEERSYRSLPWRVADFSVLHRNEA 463

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R+F   DA+ F  T +        +F     ++   G     ++  + P 
Sbjct: 464 SGALTGLTRVRKFQQDDAHIF-CTIDQVTDELRGLFKFMTHVYTMFGFPF-KLKLSTRPD 521

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                      A+    +        D+ I   +  F                       
Sbjct: 522 SYMGKLSDWDAAEDRLKKALQEFKGDDWVINPGDGAFYG-------------------PK 562

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------------GK 308
            +  + D+L    + +   ++    F     ++L        AD              G 
Sbjct: 563 IDVTVNDALGREFQCATIQLD----FQLPQNFNLLYRTNESTADRAKGEGEEEGGIPSGM 618

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    IG+      +I     GK   WP  ++P ++ +I I    +   D   ++
Sbjct: 619 ARPVMIHRAVIGSFDRFMGIIIEHFGGK---WPFWLSPRQVMVIPIMKDAE---DYAREV 672

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D  G  +  +   A L  +   ++VG++ +    V I++R     + 
Sbjct: 673 RDILHDAKLYADVDVSGNTLQKKIRAAQLAQYNFVMVVGAEEIEKRAVNIRNRDDPSSQQ 732

Query: 429 ----MSLEEVINYASHRFSNNR 446
               + L+EV+       +  R
Sbjct: 733 KGAMIDLDEVVKRLVELKAERR 754


>gi|294811598|ref|ZP_06770241.1| Threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294324197|gb|EFG05840.1| Threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 144/450 (32%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L    E   +AE   H+ +     +     +   G+  + P G      +    R+
Sbjct: 302 TKDELKQYLEFLAEAEKRDHRRLGSELDLFSVPDEIGSGLAVFHPRGGIVRRVMEDYSRK 361

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+ +SG  D Y + M               P +  +   IF
Sbjct: 362 RHEEEGYEFVYTPHATKGTLFEKSGHLDWYAEGMYPPMQLDGGTDYYLKPMNCPMHNLIF 421

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      ++ 
Sbjct: 422 DARGRSYRELPLRLFEFGTVYRHEKSGVVHGLTRARGFTQDDAHIY-CTREQMAEELDRT 480

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     +V   +     P P   
Sbjct: 481 LTFVLNLLRDYGLTDFYLELSTKDPEKYVGSDETWEEATEVLRRVAEKQGLPLTPDPG-- 538

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    +++L
Sbjct: 539 ------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNLPERFNL 576

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG +   V +     G++    AV+   + G     P  +AP +   I I 
Sbjct: 577 ----EYTAPDGSRQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPIG 629

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  +   A   K G  V  D   +++  +      L  P  +IVG + ++   
Sbjct: 630 ---DAHIEYLQSFAAEAKKRGLRVDVDASSDRMQKKIRNHQKLKVPFMIIVGDEDMNAGT 686

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       +  +  +       ++ 
Sbjct: 687 VSFRYRDGSQENGIPRDAALAKLEQVVADR 716


>gi|227534928|ref|ZP_03964977.1| prolyl-tRNA synthetase (proline--tRNA ligase) (ProRS)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187684|gb|EEI67751.1| prolyl-tRNA synthetase (proline--tRNA ligase) (ProRS)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 575

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 146/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S       
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDSSDYAA 231



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G++
Sbjct: 404 RGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGLV 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+G
Sbjct: 464 WPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGYSVLVDDRNERPGVKFADSDLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            PL+V VG K V +  VE+K R TG   ++  EE+I+   
Sbjct: 524 VPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISSIK 562


>gi|168334535|ref|ZP_02692696.1| threonyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 635

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 155/447 (34%), Gaps = 35/447 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L         +G+   +P G K +  +   I + + 
Sbjct: 208 LTEYLAAVEEAKKRDHNKLGRELKLFA-TDETVGQGLPLIMPKGAKVIQTLQRWIEDLEE 266

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G +    P +   DL+  SG +  Y   M  +   +++D+ +   P        I++ 
Sbjct: 267 ENGYLLTKTPNMAKNDLYKISGHWSHYKDGMFVMGNEEKDDEIIALRPMTCPFQFMIYKQ 326

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +     R+E      G++R R+F + D +    TP+  +  +  +  
Sbjct: 327 EQHSYRDLPIRYAETATLARNESSGEMHGLIRVRQFTLADGHIV-CTPDQLETEFKNVVD 385

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I   LG+              D+S+ F         + +           +   + 
Sbjct: 386 LIKYIMKTLGID------------KDISYRFS-KWSPEFKEKYIDNPEAWETTETIMKNI 432

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + ++   ++     A      + +  +   +   +    I+               +
Sbjct: 433 LDHLKID--YKEAENEAAFYGPKLDVQFKNVHGKEDTIITVQIDFALAER--------FN 482

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+  ADG+      +    +G      A++   + G    W   +AP  + ++ I    
Sbjct: 483 MTYVDADGEKKLPYIIHRSSLGCYERTLAMLIEKYAGAFPTW---LAPTAVKILPI---S 536

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++ A L K    V  D   E+IG +   A     P  V+VG+  + +  V +
Sbjct: 537 DKYADYAAEVAATLRKNKILVEIDQRTEKIGYKIREARNERVPYIVVVGADEMENKTVSV 596

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     +L+      +   ++ 
Sbjct: 597 RSRQKGEEGVFALDVFAQRVADEIASK 623


>gi|84394652|ref|ZP_00993343.1| prolyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84374725|gb|EAP91681.1| prolyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 551

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 101/211 (47%), Positives = 138/211 (65%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E +  GA+E+ +P +Q  +LW
Sbjct: 1   ISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAVEILMPVVQPFELW 60

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+ I SY+ LP   YQIQ KFR
Sbjct: 61  EETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRNEISSYKQLPLNLYQIQTKFR 120

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +Y + F R+GL+  P+ A+SG
Sbjct: 121 DERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDAYCKAFDRMGLEYRPVLADSG 180

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            IGG  S EF VLA++GE  +  S +     
Sbjct: 181 AIGGSGSQEFHVLAESGEDLIAFSSESDYAA 211



 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I        A   D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 346 DGKHYFGINWGRDVELAQVEDLRNVIEGDLSPCGQGTIQLKRGIEVGHIFQLGNTYSKAM 405

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK   ++MG YGIG  RVVA+ IE +HD  GI WPD++APF++++I +  H 
Sbjct: 406 NCNVLGPDGKSVILEMGCYGIGVSRVVASAIEQNHDKFGITWPDALAPFQVAIIPMNMHK 465

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+G P  +++G + + +   E
Sbjct: 466 SERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELVGIPHTIVIGDRSMDEGNFE 525

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +E ++++ VI +   + +
Sbjct: 526 YKNRRTGDKEVIAMDTVIEHLKAQLA 551


>gi|313665156|ref|YP_004047027.1| threonine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949904|gb|ADR24500.1| threonine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 639

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 156/439 (35%), Gaps = 40/439 (9%)

Query: 17  DAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D     H+L+ +T    G       G+  WLP G    + +   +R+++     I +  P
Sbjct: 232 DRRSRDHRLINKTLNIFGFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETP 291

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + + +L+  SG +D YG++M +  +     D+  I  P +      +++   +SYR+LP
Sbjct: 292 PIGTVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLP 351

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +  ++ R E      G+ R R   + D++ F +  +  +  +   +     +    
Sbjct: 352 LRICEHAIQHRFESSGSLTGLERVRGMKLTDSHIF-VRSDQIEDEFRSTYKLISEVLKTF 410

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            ++   +          +             + +      D    S      D+      
Sbjct: 411 NIQIDYLSLSLRDPNDKV-------------KFYKDDLMWDKAESSLEKVLIDLGLKYEK 457

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+  +    +      VS   ++    F    K+       +   D K
Sbjct: 458 RIGDAAFYGPKLDIQIKT---AQNHEITVSTIQLD----FLMPNKF----DLIYIDKDQK 506

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                M   G IG      A +     G   + P  +AP ++ +I I    +   +    
Sbjct: 507 LVRPIMIHRGLIGTYERFIATLLEQTKG---VLPLWLAPKQVEIIPI---SESNLEYANL 560

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I+ +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  + 
Sbjct: 561 IHQKLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSEKQI 620

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S++E ++    +  + +
Sbjct: 621 TISIQEFVDMLKQQIKDKK 639


>gi|326382111|ref|ZP_08203803.1| threonyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198841|gb|EGD56023.1| threonyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 700

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/456 (17%), Positives = 148/456 (32%), Gaps = 51/456 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +    RE+    G
Sbjct: 261 YLDRLAEAEKRDHRRLGAELDLFS-FPDELGSGLPVFHPKGGIIRKEMEDYSREQHAAGG 319

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEV 113
              ++ P L  + L+  SG  D Y   M      +             +     P +  +
Sbjct: 320 YEFVNTPHLTKSTLFEVSGHLDWYADGMFPPMHLDAEYNEDGTLRKPGQDYYVKPMNCPM 379

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E    
Sbjct: 380 HNLIFGSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRARGFTQDDAHIY-CTQEQVVE 438

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                    L++    GL    +   +  P     S E    A     QV  S      P
Sbjct: 439 ELTTTLNFVLQLLKDYGLDDFYLELSTKDPAKYVGSDEVWDEATETLRQVGESSGLELVP 498

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + ++ D+L    ++S   ++    F   
Sbjct: 499 DPE--------------------GAAFYGPKISVQVKDALGRTWQMSTIQLD----FNLP 534

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++ L  +AT    DG K   V +     G++     V+   + G   +W   ++P ++ 
Sbjct: 535 ERFQLEYTAT----DGTKKRPVMIHRALFGSIERFFGVLTEHYAGAFPVW---LSPVQVV 587

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +    +   D  + + +RL         D   +++  +         P  ++ G + 
Sbjct: 588 GIPVA---EAFADHLQNVVSRLKGRRVRAEVDFSDDRMQKKIRNHTTAKVPFMLLAGERD 644

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V  + V  + R       + ++E I        + R
Sbjct: 645 VQANAVSFRFRDGTQLNGVPVDEAIVAIDEWEESRR 680


>gi|282164523|ref|YP_003356908.1| prolyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282156837|dbj|BAI61925.1| prolyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 474

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 164/433 (37%), Gaps = 70/433 (16%)

Query: 25  LMLRTGM-IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVE 82
           LM+   M +    KGIY W P G      V  ++R   +     E   P L    +L  E
Sbjct: 22  LMMAQVMDVRYPIKGIYVWYPFGFSIRKKVYNMLRALMDV-DHQECYFPMLIPKPELLKE 80

Query: 83  SGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           S     +  E+  +        +  +   PT E  +  +++  I+S+ +LP   YQI   
Sbjct: 81  SEHIKGFEDEVYWVTHGGLSPLEIPLALRPTSETAIYPMYKLWIRSHADLPLKLYQIVNT 140

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FR E +    ++R RE                                            
Sbjct: 141 FRYETKQTRPLIRLREITS----------------------------------------- 159

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   +H      +  E QV               +DF   +S+  ++ +       
Sbjct: 160 -----FKEAHTAHATWEDAEKQV--------HEAMDLYSDFFTKLSVPFVINKRPDWDKF 206

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
               +       +P       R +++G + + GTK++     T++   G+  YV    YG
Sbjct: 207 PGADYTMAFDTLMPNG-----RSLQIGTVHHLGTKFAKTYDITYEDDKGERQYVNQTCYG 261

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVG 376
           I + R +AAVI    D KG++ P + AP ++ +I I  K+  +   D C K+ A L+  G
Sbjct: 262 I-SERCIAAVIGIHGDNKGLVLPPNAAPTQVVIIPIVFKSGGEEVLDVCRKVKAILNDSG 320

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                DD  E+ G+++   ++ G P ++ +G + + ++ V +  R  G+++ + ++ +  
Sbjct: 321 ITAVLDDTNERPGAKYYKWEMKGVPFRIEIGPRDIKNNAVMLVRRD-GVKQSIPMDGLSQ 379

Query: 437 YASHRFSNNRPVL 449
              ++  + +  L
Sbjct: 380 TVQNKLMDFQAEL 392


>gi|47220916|emb|CAG03123.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 822

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/487 (16%), Positives = 156/487 (32%), Gaps = 94/487 (19%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSW-------------------- 42
            +L+E  R   +A+   H+ + +       H  S G                        
Sbjct: 360 KMLKEWERFQEEAKKRDHRKIGKDQELFFFHDLSPGSCFLPCPEERTSTTPWRSSSGLVS 419

Query: 43  --------------------------LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
                                      P G    D V  + +EE  R G  E++ P + +
Sbjct: 420 LTHIVCTMAAWPTPACPSSGSLGPEVWPAGCGVADGV-WLFQEEYWRRGFQEVATPNIYN 478

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW  SG +  YG  M       D      P +      +F    +S+R LP       
Sbjct: 479 RKLWETSGHWQHYGHNMFSFPVEED-VFALKPMNCPGHCLVFSQRPRSWRELPLRLADFG 537

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           +  R+EL     G+ R R F   DA+ F  T E  +            ++   G     +
Sbjct: 538 VLHRNELSGTLTGLTRVRRFQQDDAHIF-CTVEQIESEMKGCLDFLRCVYKVFGFSF-QL 595

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P            A+                 P +                    
Sbjct: 596 HLSTRPEKFLGDIAVWNQAEKQLESSLNQFGEPWKLNPGDG------------------- 636

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQ 313
            A      + K+ D++    + +   ++    F    +++L    TF G DG  +   V 
Sbjct: 637 -AFYGPKIDIKIQDAIGRYHQCATVQLD----FQLPLRFNL----TFVGKDGDDRGQPVI 687

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C D   K+  + +
Sbjct: 688 IHRAVLGSVERMVAILTENYAGK---WPLWLSPRQVMVVPVNP---ACEDYARKVCKQFT 741

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G     D D G  +  +   A L  +   ++VG K    + V ++ R   +  ++   
Sbjct: 742 EAGLMADVDLDSGCLLNRKIRNAQLAQYNFILVVGEKEKMTNSVNVRTRDNKVHGELPAA 801

Query: 433 EVINYAS 439
           EV+   +
Sbjct: 802 EVLARLT 808


>gi|222823773|ref|YP_002575347.1| prolyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254782892|sp|B9KGB1|SYP_CAMLR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222538995|gb|ACM64096.1| prolyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 565

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 156/282 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK++    +ENP+DA + SH  +++   I Q   G+Y++LPLG++ LD +  II+EE
Sbjct: 1   MKFSKFYAISTKENPKDATLPSHIFLVKGAFIEQIGSGLYNFLPLGKRVLDKIKNIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+++     A+LW ESGR++ +GKE+LR  DR +   + GPTHEE M  + R+
Sbjct: 61  MDKAGALEVNLSFNTPAELWKESGRFNVFGKELLRFKDRKENDFVLGPTHEEAMVALIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF  +       +N M  +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHASEADLDKEFNLMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  RLGL    + A+SG IGG  S EF+VLA  GE  +   +               
Sbjct: 181 YSKILTRLGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILLCEHCDYAANIEAAKRTK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +       +   +   +    E+L +    N   + + I
Sbjct: 241 KTCTDERPEADFATQFHTPNVKTIEELAEFFKINPYYTIKAI 282



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 3/176 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       ++K   ++GIEVGHIF  G KYS  M+A++   +GK  +  MG YG+G  R+
Sbjct: 391 EHDLCPKCQHKLKQSKGIEVGHIFKLGKKYSQAMNASYLDENGKAQFFTMGCYGMGVSRL 450

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VA  IE+SHD KG IW  ++APF + +I     D    +  E+IY           +DD 
Sbjct: 451 VAVAIEASHDEKGCIWNKTLAPFVLDIIVSNIKDIKAMEFAEQIYTHFKDKEI--LFDDR 508

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            E+ G +    +L+GFP  +++G K + + +VE+ HR T  ++ +  +EVI++   
Sbjct: 509 NERFGVKINDFELMGFPYALVIG-KSLENDEVELIHRNTLEKQVLKTQEVISHLEK 563


>gi|302561695|ref|ZP_07314037.1| threonyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302479313|gb|EFL42406.1| threonyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 658

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 138/450 (30%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L    E   +AE   H+ +     +     Q   G+  + P G      +    R 
Sbjct: 241 TKDELKAHLEFLAEAEKRDHRKLGSELDLFSIPEQIGSGLAVFHPKGGIIRRVMEDYSRR 300

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+  SG  D Y   M               P +  +   IF
Sbjct: 301 RHEEEGYEFVYTPHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIF 360

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      +K 
Sbjct: 361 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMSEELDKT 419

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     +V   +       P   
Sbjct: 420 LTFVLNLLRDYGLTDFYLELSTKDPEKFVGSDEAWEEATQTLREVAEKQGLELVADPG-- 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    ++  
Sbjct: 478 ------------------GAAFYGPKISVQTKDAIGRTWQMSTIQLD----FNLPERF-- 513

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG K   V +     G++    AV+   + G    W   +AP +   I + 
Sbjct: 514 --DLEYTAADGSKTRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQAVGIPVG 568

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  EK      + G  V  D   +++  +      L  P  +IVG + ++   
Sbjct: 569 ---DAHVEYLEKFATEARQKGLRVEVDSSSDRMQKKIRTQQKLKVPFMIIVGDEDMNAGT 625

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       +  E+ +          
Sbjct: 626 VSFRYRDGSQENGIPREQALAKLLDVVERR 655


>gi|191638564|ref|YP_001987730.1| prolyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|190712866|emb|CAQ66872.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Lactobacillus casei BL23]
          Length = 579

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 146/231 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 5   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 65  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 125 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S       
Sbjct: 185 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDSSDYAA 235



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G++
Sbjct: 408 RGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGLV 467

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+G
Sbjct: 468 WPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGYSVLVDDRNERPGVKFADSDLIG 527

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            PL+V VG K V +  VE+K R TG   ++  EE+I+   
Sbjct: 528 VPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISSIK 566


>gi|300934571|ref|ZP_07149827.1| threonyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 706

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/463 (15%), Positives = 148/463 (31%), Gaps = 56/463 (12%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           SK  L   QE   +AE   H+     L L +    +   G   + P G      +    R
Sbjct: 266 SKEALESYQEMLAEAEKRDHRRLGAELDLFS-FPDEIGSGFPVFHPNGGIVRLEMEEHSR 324

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIY 106
                +G   ++ P +   DL+ +SG  D Y + M      + +                
Sbjct: 325 RRHIESGYSFVNTPHITKGDLFQKSGHLDFYAEGMFPPMQLDGEVDAEGNVTKQAQDYYA 384

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  
Sbjct: 385 KPMNCPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-C 443

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCS 224
           T +  +     +    + +    GL    +   +  P     S E    +     +V  +
Sbjct: 444 TEDQLEQELTTVLEFIISLLRDYGLDDFYLELSTKDPNKFVGSDEIWERSTEILQRVATN 503

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 P P+                      A      + +  D++    ++S   ++ 
Sbjct: 504 SGLELVPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD- 542

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
              F    +++L     +   DG K   + +     G++     V+   + G    W   
Sbjct: 543 ---FNLPERFNL----EYTAPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW--- 592

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++  I +        +  + + + L K G     D   +++  +         P  
Sbjct: 593 LAPHQVVGIPVA---DEFNEYLDSVASDLRKRGIRAEVDTSDDRMQKKIRTHTTGKVPFM 649

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++VG + V    V  +         +  +  +   +      R
Sbjct: 650 LLVGGRDVEADAVSFRFLDGSQVNGVPRDRAVELIAQWIGERR 692


>gi|124025277|ref|YP_001014393.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|152112940|sp|A2C0W8|SYP_PROM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123960345|gb|ABM75128.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 596

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 145/237 (61%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +A+I SH+L++R G I + + GIY+++PL  K L  + +I+ EE
Sbjct: 1   MRVSRLMLNTLRDVPSEADIISHQLLVRGGYIKRITGGIYAYMPLLWKVLKKITSIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G ++  +P LQ +++W  SGR+ SY +    M  L DR  K +  GPTHEEV+T I
Sbjct: 61  LSTKGCLQTLLPQLQPSEIWERSGRWKSYTQGEGIMFSLKDRQGKELGLGPTHEEVITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF       + +Y+ M
Sbjct: 121 ISQTIHSYKQLPINIFQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANENDLQSTYSDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y  IF + GL  + + A+SG IGG  S EF+V A++GE  +  S D        
Sbjct: 181 RNAYQNIFTKCGLDFVCVDADSGAIGGAASQEFMVTAESGEDLILISSDGKYGANQE 237



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 121/283 (42%), Gaps = 9/283 (3%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  K +   + + Y     + G+ +IP     G IG DLS   +  +   E +     D 
Sbjct: 318 QELKKNVLDIRIIYNEDMQKQGITNIPF----GFIGPDLSDNLLAQSKGWEKKFIRIADN 373

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIE 283
               + S     +                                      K    RGIE
Sbjct: 374 SAKDLKSFICGNNIKDEHKIFYNWNLINTVQLICDIRKAKPGDRCIHDKTQKLEECRGIE 433

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +GHIF  GTKYS  ++ATF    G + ++ MG YGIG  R+  A +E +HD  GIIWP S
Sbjct: 434 IGHIFQLGTKYSKSLNATFTNEKGIEDHLWMGCYGIGISRLAQAAVEQNHDDLGIIWPTS 493

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +APF + +I     +   +   E IY +L +   DV  DD  ++ G +F  ADL+G P +
Sbjct: 494 IAPFTVIIIIANIKNNDQKCLAEDIYQKLIQNRVDVLLDDRDDRAGIKFKDADLIGIPWR 553

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G +  S   VE+ +R T   E + L  V+   S  F+  +
Sbjct: 554 IVAG-REASSGLVELHNRKTKTTELLDLNSVLKKLSEEFNTEK 595


>gi|333028319|ref|ZP_08456383.1| putative threonyl-tRNA synthetase [Streptomyces sp. Tu6071]
 gi|332748171|gb|EGJ78612.1| putative threonyl-tRNA synthetase [Streptomyces sp. Tu6071]
          Length = 580

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 135/438 (30%), Gaps = 40/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 176 EAEKRDHRKLGNELDLFS-FPEEVGPGLAVFHPKGGIIRRAMEDYSRRRHEEEGYEFVYS 234

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 235 PHTTKGALFEKSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 294

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ RSR F   DA+ +  T E      +K     L +    G
Sbjct: 295 RLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIY-CTKEQMAEELDKTLTFVLNLLRDYG 353

Query: 190 LKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           L    +   +        S E    A     QV   +     P P               
Sbjct: 354 LDDFYLELSTKDEKKFVGSDEVWEEATATLQQVAEKQGLPLVPDPG-------------- 399

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG- 307
                   A      + +  D++    ++S   ++    F    ++      ++  ADG 
Sbjct: 400 ------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLPERF----DLSYTAADGS 445

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   V +     G++    AV+   + G     P  +AP +   I +           ++
Sbjct: 446 RQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPVG---DAHVPYLKE 499

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             A   + G  V  D   +++  +         P  VIVG   ++   V  +HR      
Sbjct: 500 FAAEARRKGLRVDVDASSDRMQKKIRNHQKQKTPFMVIVGDDDMNAGTVSFRHRDGSQEN 559

Query: 428 DMSLEEVINYASHRFSNN 445
            +  +E I          
Sbjct: 560 GIPKDEAIAKLLDVVERR 577


>gi|256384406|gb|ACU78976.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385238|gb|ACU79807.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455488|gb|ADH21723.1| threonine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 639

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 157/439 (35%), Gaps = 40/439 (9%)

Query: 17  DAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D     H+L+ +T    G       G+  WLP G    + +   +R+++     I +  P
Sbjct: 232 DRRSRDHRLINKTLNIFGFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETP 291

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + + +L+  SG +D YG++M +  +     D+  I  P +      +++   +SYR+LP
Sbjct: 292 PIGTVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLP 351

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +  ++ R E      G+ R R   + D++ F +  +  +  +   +     +    
Sbjct: 352 LRICEHAIQHRFESSGSLTGLERVRGMKLTDSHIF-VRSDQIEDEFRSTYKLISEVLKTF 410

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            ++   +          +             + +      D    S      D+      
Sbjct: 411 NIQIDYLSLSLRDPNDKV-------------KFYKDDLMWDKAESSLEKVLIDLGLKYEK 457

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+  +    +      VS   ++    F    K+      T+   D K
Sbjct: 458 RIGDAAFYGPKLDIQIKT---AQNHEITVSTIQLD----FLMPNKF----DLTYIDKDQK 506

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                M   G IG      A +     G   +W   +AP ++ +I I    +   +    
Sbjct: 507 LVRPIMIHRGLIGTYERFIATLLEQTKGVLSLW---LAPKQVEIIPI---SESNLEYANL 560

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I+ +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  + 
Sbjct: 561 IHQKLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQI 620

Query: 428 DMSLEEVINYASHRFSNNR 446
            + ++E I+    + ++ +
Sbjct: 621 TVPIQEFIDMLKQQINDKK 639


>gi|117928565|ref|YP_873116.1| threonyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|117649028|gb|ABK53130.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidothermus
           cellulolyticus 11B]
          Length = 685

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 148/445 (33%), Gaps = 37/445 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E  R D      +L L +    +   G+  + P G      +    R +  +
Sbjct: 271 QKYLDLLREAERRDHRRLGVELDLFS-FPDEIGSGLAVFHPKGGIIRREMENYSRLQHEK 329

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G + ++ P +   DL+  SG   S+ + M    +          P +  +   I+RS  
Sbjct: 330 AGYLFVNTPHITKHDLFATSGHLQSFAEGMFPPFELDGGVTYYLKPMNCPMHILIYRSRG 389

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ R+R F   DA+ F  T E        +    
Sbjct: 390 RSYRELPMRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIF-CTREQMGAELRDLLRFV 448

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +    GL    +   +         +    A   E     ++D     +P        
Sbjct: 449 LDLLRDYGLTDFYLELSTRDDSPKFVGDPADWAQATEALEAAARDSGLELVPDPGGA--- 505

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + +  D++  + ++S   ++    F    ++       
Sbjct: 506 ---------------AYYGPKISVQARDAIGRSWQISTIQLD----FNLPKRF----DLE 542

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++ ADG     V +     G++     V+   + G     P  +AP +   I +   D  
Sbjct: 543 YQAADGTRQRPVMIHRALFGSIERFFGVLLEHYAGAF---PPWLAPVQAVGIPVS--DAH 597

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                + + A L   G     DD  +++  +   A     P  +I G   ++   V  ++
Sbjct: 598 VPYLRDTVGASLRAAGIRYEVDDSDDRMQKKIRNAAKQKIPYLLIAGDDDIARHAVSFRY 657

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R    +  + + + +          
Sbjct: 658 RDGSQKNGVPIADAVAEIRDAIDRR 682


>gi|71418959|ref|XP_811024.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70875641|gb|EAN89173.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/533 (16%), Positives = 160/533 (30%), Gaps = 104/533 (19%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  L   +    +A    H+ + R       H+ S G   WLP G +  + +    R++ 
Sbjct: 286 QTMLTEWKALQAEAARRDHRNIGRQQQLFGFHEVSPGSAFWLPHGARIYNALVEFQRKQY 345

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G  E+  P + S+ LW+ SG +D Y   M R+     +     P +      ++   
Sbjct: 346 RRRGFEEVVSPNMFSSKLWMVSGHWDKYADNMFRIVVEK-EDHGMKPMNCPGHCIMYAMQ 404

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  +    +  R+EL     G+ R R F   DA+ F    +  +       V 
Sbjct: 405 QHSYKELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRMDQVQEEIRGALVF 463

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP------- 233
              ++  LG K     A + P     + E    A+        S   +   +P       
Sbjct: 464 LDDVYRTLGFKFFLKHA-TRPENKLGTEEMWDQAEAYLRAALNSFCGIPEHLPDPFKEGA 522

Query: 234 ---------------------------------SENTDFDDIISLNSIVEQWTAPYAATS 260
                                             E  D     +     E+ T   A   
Sbjct: 523 TFTFDGRRDTVKKLRALLKKQAANRENKDTEKKEEKDDEWKGPTHAEAWEENTGDGAFYG 582

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--------------- 305
              +  + D+L    + +   ++      FG KY+LP S    GA               
Sbjct: 583 PKIDIVVEDALRRRHQCATVQLDFNLPQRFGLKYTLPTSTVEGGAGAEAKEHHTDPNAPN 642

Query: 306 --------DGKD----------------------------HYVQMGSYGIGAMRVVAAVI 329
                   +GK                               V +     G++    A++
Sbjct: 643 VGTDATTTEGKPEAGDECLSSYEKAARELCIDRRLDANQARPVMIHRAIFGSLERCIAIL 702

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              + G+   WP  ++P ++ +I + A +        K+       G     D     + 
Sbjct: 703 CEHYGGE---WPLWLSPRQVIVIPVSAENTA---YATKVRDAFYADGFHADVDSGNATLD 756

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +   A++  +    +VG        V ++ R        SL EV  +     
Sbjct: 757 KKIRNAEVARYNFIFVVGQVEEEAQTVNVRTRDNRRHGTKSLAEVQRWLRELV 809


>gi|111219789|ref|YP_710583.1| threonyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111147321|emb|CAJ58970.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) [Frankia alni
           ACN14a]
          Length = 682

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 150/443 (33%), Gaps = 35/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L      +  KG+  WLP G    D +    R+ + R 
Sbjct: 250 EYLTALAEAAKRDHRRIGEDLDLFA-FSPEIGKGLPLWLPNGTIIRDELEGWARQTERRL 308

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   DL+  SG    Y +++        +     P +      ++++  KS
Sbjct: 309 GYRRVVTPHITQEDLYFLSGHLPYYAEDLYAPIQIEGENYYLKPMNCPHHHMVYKARPKS 368

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP+   +    +R E   +  G+MR+R F   DA+ +  T E +K  + ++   +  
Sbjct: 369 YRELPYKIAEYGTVYRFERSGQLHGLMRARGFTQNDAHIY-CTREQAKEQFLEVMRMHDE 427

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +  LG+    M                 L D   T  +     M         +  D  
Sbjct: 428 YYRALGITDFYMVL--------------ALRDPANTTKYHDDAQMWEDAERITREAMDES 473

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            +  +  +     A      +  +     +    S   +++     F  KY         
Sbjct: 474 GIPYV--EELGGAAHYGPKVDFIIRSVTGKEFAASTNQVDLYTPQRFDLKY--------H 523

Query: 304 GADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG     V +    +G+     A +     G   +W   +AP ++ +I I        
Sbjct: 524 DADGTDKQVVVIHRAPLGSHERFVAFLTEHFGGAFPVW---LAPEQVRVIPIMP---ELD 577

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E +   L      V  D    ++ ++   A     PL V+VG + V +  V ++ R 
Sbjct: 578 EYAETVSQALLDADVRVDVDASDGRLPARVRTAVTRKIPLIVVVGRREVEEGSVSVRDR- 636

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +G    M L + +          
Sbjct: 637 SGQETSMPLADFVRRVRELIDTR 659


>gi|71655606|ref|XP_816364.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881486|gb|EAN94513.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 817

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 89/533 (16%), Positives = 160/533 (30%), Gaps = 104/533 (19%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  L   +    +A    H+ + R       H+ S G   WLP G +  + +    R++ 
Sbjct: 287 QTMLTEWKALQAEAARRDHRNIGRQQQLFGFHEVSPGSAFWLPHGARIYNALVEFQRKQY 346

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G  E+  P + S+ LW+ SG +D Y   M R+     +     P +      ++   
Sbjct: 347 RRRGFEEVVSPNMFSSKLWMVSGHWDKYADNMFRIVVEK-EDHGMKPMNCPGHCIMYAMQ 405

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  +    +  R+EL     G+ R R F   DA+ F    +  +       V 
Sbjct: 406 QHSYKELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRMDQVQEEIQGALVF 464

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP------- 233
              ++  LG K     A + P     + E    A+        S   +   +P       
Sbjct: 465 LDDVYRTLGFKFFLKHA-TRPENKLGTEEMWDQAEAYLRAALNSFCGIPEHLPDPFKEGA 523

Query: 234 ---------------------------------SENTDFDDIISLNSIVEQWTAPYAATS 260
                                             E  D     +     E+ T   A   
Sbjct: 524 TFTFDGRRDSVKKLRALLKKQAANRENKDTEKKEEKDDEWKGPTHADAWEENTGDGAFYG 583

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---------------- 304
              +  + D+L    + +   ++      FG KY+LP S    G                
Sbjct: 584 PKIDIVVEDALRRRHQCATVQLDFNLPQRFGLKYTLPTSTVEGGAGAEAKEHHADPNAPK 643

Query: 305 -------ADGKD----------------------------HYVQMGSYGIGAMRVVAAVI 329
                  A+GK                               V +     G++    A++
Sbjct: 644 VGTDATTAEGKPEAEDEFLSSYEKAAKELCIDRRLDANQARPVMIHRAIFGSLERCIAIL 703

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              + G+   WP  ++P ++ +I + A +        K+       G     D     + 
Sbjct: 704 CEHYGGE---WPLWLSPRQVIVIPVSAENTA---YATKVRDAFYADGFHADVDSGNATLD 757

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +   A++  +    +VG        V ++ R        SL EV  +     
Sbjct: 758 KKIRNAEVARYNFIFVVGQVEEETQTVNVRTRDNRRHGTKSLAEVQRWLRELV 810


>gi|219681610|ref|YP_002467996.1| prolyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682167|ref|YP_002468551.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471296|ref|ZP_05635295.1| prolyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254782890|sp|B8D937|SYP_BUCA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782891|sp|B8D7E1|SYP_BUCAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219621900|gb|ACL30056.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624453|gb|ACL30608.1| prolyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311086555|gb|ADP66636.1| prolyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087136|gb|ADP67216.1| prolyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087672|gb|ADP67751.1| prolyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 572

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 148/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y L   ++ P DA+I SH+LM+R+GMI + S G+Y WLP G + L  +  II  E
Sbjct: 1   MLTSQYLLSTSKDIPYDAKIISHQLMIRSGMIRKTSSGLYVWLPTGMRVLKKIKNIITTE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW ESGR + YG+E+LR  DR     I GPT+EEV+T+   S
Sbjct: 61  MEKINALEILMPIIQPEYLWKESGRLNLYGEELLRFLDRRKNQFILGPTNEEVVTNFIGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFG++R+REF MKDAYSF +     +++YNK + S
Sbjct: 121 EIHSYKQLPLTVYQIQTKFRDEIRPRFGIIRTREFTMKDAYSFHINQSCLENTYNKFYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y+ IF ++ L    ++A+SG +GG++SHEF   +  GE ++  S 
Sbjct: 181 YINIFKKMNLNFCAVKADSGSMGGNISHEFQAFSQNGEDEIVFSN 225



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG--IEVGHIFYFGTKYSLPM 298
           +     ++      P     D+      D  P           IE+GHIF  G KYS  +
Sbjct: 366 NKHFFINVNWNIDLPMPIFKDIRKVTKNDLSPNGSGYLNIKQSIEIGHIFQLGQKYSRKI 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
             + K  +G    + MG YGIG  R+ AAVIE  HD  GIIWPDS+APF++ ++ I    
Sbjct: 426 QQSVKIKNGNLKNLYMGCYGIGITRIAAAVIEQHHDKNGIIWPDSIAPFEVVILPINMKK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D   +     +Y +  K G DV  DD  E+ G  F   DL+G P Q+I+  + ++   VE
Sbjct: 486 DNKIKIIAHFLYKKFKKTGIDVILDDRDERPGVMFNEVDLIGIPHQIIISKRSINYDNVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            + R       ++++++ N+   +   
Sbjct: 546 YRERKNKENILINIKDIKNFIIQKLKK 572


>gi|296170866|ref|ZP_06852424.1| threonine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894491|gb|EFG74233.1| threonine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 677

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 149/454 (32%), Gaps = 56/454 (12%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E  R D      +L L +    +   G+  + P G      +    R +    G 
Sbjct: 244 LELLEEAQRRDHRKLGTELDLFS-FPDEIGSGLAVFHPKGGVVRRELEEYSRRKHIEAGY 302

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVM 114
             ++ P +  A L+  SG  D Y + M      +             +     P +  + 
Sbjct: 303 EFVNTPHITKAQLFHTSGHLDWYAEGMFPPMHLDAEIGDDGTVRKPGQDYYLKPMNCPMH 362

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T IFRS  +SYR LP   ++    +R E      G+ R+R F M D++ F  T E     
Sbjct: 363 TLIFRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDSHIF-CTREQLHGE 421

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +    L +    GL+   +   +  P     + E    A     +V         P 
Sbjct: 422 LASLLRFVLELLGDYGLEDFYLELSTKDPEKFVGTDEMWEQATNSLAEVAAESGLELVPD 481

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P                       A      + +  D+L  + ++S   ++         
Sbjct: 482 PG--------------------GAAFYGPKISVQARDALGRSWQMSTIQVDF-------- 513

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +       +   DG     V +     G++     ++   + G    W   +AP ++  
Sbjct: 514 NFPERFELEYTAPDGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQVVG 570

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +           E + A+L   G  V  D   +++  +         P  ++ G + V
Sbjct: 571 IPVA---DEHVPYLESVAAQLKSHGVRVEVDASDDRMAKKIVHHTGQKVPFMLLAGDRDV 627

Query: 412 SDSKVEIK--HRL--TGIREDMSLEEVINYASHR 441
               V  +   R    G+  D +++ ++ + + R
Sbjct: 628 QAKAVSFRFGDRTQINGVPRDSAVDAIVKWIADR 661


>gi|253580110|ref|ZP_04857377.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848629|gb|EES76592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 653

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 147/451 (32%), Gaps = 38/451 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L    E   +A+   H  + R   I        +G+   +P G   +  +   I 
Sbjct: 221 ASKDELKEHLEQMEEAKKRDHNKLGREMKIFTTVDVIGQGLPLIMPNGVIMMQELQRWIE 280

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTD 116
           +E+ + G I    P +  +DL+  SG +D Y + M  L D   + +     P        
Sbjct: 281 DEETKRGYIRTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEETDKEVFALRPMTCPFQYY 340

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++++   SYR+LP  + +    FR+E      G+ R R+F + + +   + P+     + 
Sbjct: 341 VYKAEQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQMVKEFK 399

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                       LG++                   +   D    + +     +     + 
Sbjct: 400 DCIALAQYCLQVLGVEEDVTY-------------HLSKWDPNNREKYIGDAEVWNQTEAH 446

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +   LN    +     A      +    +   +   +     +            
Sbjct: 447 IRQMLE--ELNIPFTEDVGEAAFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ------ 498

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   +G K     +    +G      A +   + G    W   + P ++ +I I
Sbjct: 499 --FDMYYIDENGEKQRPYIIHRTSMGCYERTLAWLIEKYAGMFPTW---LCPEQVRVIPI 553

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   +   K+ A+L + G     D   E++G +   A L   P  +IVG+K   + 
Sbjct: 554 ---SEKFHNYAAKVEAQLKENGIRCSVDQRSEKMGYKIREARLARVPYMLIVGAKEEEEG 610

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           KV ++ R  G      L + +        N 
Sbjct: 611 KVSVRSRYLGDEGMKDLGDFLAAIKEEIKNK 641


>gi|199597103|ref|ZP_03210535.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258508613|ref|YP_003171364.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199591907|gb|EDY99981.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257148540|emb|CAR87513.1| Prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|259649920|dbj|BAI42082.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 576

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 101/231 (43%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVYAYLPLAERVLSRIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPALLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   +  + G +GG  S EF  +A  GE  +  S       
Sbjct: 181 YTNIFDRLGLRYRTIIGDGGAMGGKDSKEFSAIASIGEDTIVYSDSSDYAA 231



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+YS  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+I
Sbjct: 404 RGIEIGHIFKLGTRYSETMGADFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADDHGLI 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+G
Sbjct: 464 WPTTIAPFDIHLIPVNLKREEQKTLTASIGTMLEDAGYSVLVDDRNERPGVKFADSDLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            PL+V VG K V +  VE+K R TG   ++  EE+I+   
Sbjct: 524 IPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISSIK 562


>gi|332655151|ref|ZP_08420892.1| proline--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516011|gb|EGJ45620.1| proline--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 480

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 151/421 (35%), Gaps = 67/421 (15%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           +  +I   S KG++ + P G    +N+ A + +    TG   + +P L    L   E   
Sbjct: 29  KAELIDYSSIKGVFIYRPYGYAIWENIQAELDKRFKETGHENVYLPMLIPESLLQKEKDH 88

Query: 86  YDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E   +     ++ ++     PT E +  + ++S I S+R+LP  + Q     R 
Sbjct: 89  VEGFAPECAWVTYGGSEKLEERYCIRPTSETLFCEHYKSIIHSHRDLPKLYNQWCSVLRW 148

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R REFL ++ ++   T E ++    +M    L I+                
Sbjct: 149 E-KTSRPFLRHREFLWQEGHTMHATEEEARQETQQM----LNIYAD-------------- 189

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                               F         +    TD +                     
Sbjct: 190 --------------------FLENVLAMPVVKGRKTDKEKFNGAEETYTVE--------- 220

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                             + ++ G   YFG  ++     TF G D + HY    S+G+ +
Sbjct: 221 ------------CMMHDKKALQSGTSHYFGDGFARAFDITFTGKDNQLHYPHQTSWGV-S 267

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  +I +  D  G++ P  +AP +  +I +  H +   DA   +  RL   G     
Sbjct: 268 TRMIGGIIMTHGDNNGLVLPPRIAPIQAMVIPVAQHKEGVLDAATDLLNRLKAAGIRASM 327

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D   + +G + A  ++ G PL+V +G K +   +  I  R +G +  + L E+       
Sbjct: 328 DASDQSMGWKAAQYEMKGVPLRVEIGPKDMEKGQCCICRRDSGEKIFVPLAELETTVPQL 387

Query: 442 F 442
            
Sbjct: 388 L 388


>gi|3859700|emb|CAA21975.1| mitochondrial threonyl tRNA synthetase [Candida albicans]
          Length = 455

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 154/449 (34%), Gaps = 63/449 (14%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              +  I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P 
Sbjct: 30  TQSNHVISSKQLLYTTD---PTSPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPL 86

Query: 74  LQSADLWVESGRYDSYGKEMLRL----------AD-RNDKAMIYGPTHEEVMTDIFRSHI 122
           +    LW +SG +D+Y  +M ++           D   +      P +      IF    
Sbjct: 87  IFKTKLWKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMNCPSHCMIFAKFD 146

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP  +       R+E      G+ R R F   D + F  + +             
Sbjct: 147 RSYQELPVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF-CSMDQIDGEIKNTLELI 205

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              ++  G+  I     + P                    F  +        S+  +  +
Sbjct: 206 KDTYNVFGINEIEFYLSTRP-----------------EDKFIGEIETWDIAESQLKNVLN 248

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +            A      +  L D+  +  +V    ++    F    ++       
Sbjct: 249 STAGEGNWATREGDGAFYGPKIDVLLKDAFNKKHQVGTIQLD----FQLPNRF----ELK 300

Query: 302 FKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DGK     + +     G++    A++   + GK   WP  + P +  ++ I    +
Sbjct: 301 YVGEDGKRDHQPILVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQALIVPIN---E 354

Query: 360 VCRDACEKIYARLSKVGCD--------------VFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 E++  +LS                   V  D  GE +G++   A   G+   ++
Sbjct: 355 SHVPVAEELQKKLSGDIVSCDNAIAPLTGFTFHVDIDKRGETVGARTKDAIQKGYSYLIM 414

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K +++    ++ R     ++M+ +E+
Sbjct: 415 IGDKDIANGTFAVRSRDDRKIKNMTSDEI 443


>gi|260578838|ref|ZP_05846745.1| threonine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603136|gb|EEW16406.1| threonine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 667

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/459 (15%), Positives = 147/459 (32%), Gaps = 51/459 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L +    +   G   + P G      +    R+   
Sbjct: 230 LAEYQTMMAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPDGGIVRLEMEEHSRKRHI 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTH 110
            +G   ++ P +   DL+ +SG  D Y   M      + +                 P +
Sbjct: 289 ASGYSFVNTPHVTKGDLFQKSGHLDFYADGMFPPMQLDGETDDEGNVTKPAQDYYAKPMN 348

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 349 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQ 407

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +     +    + +    GL    +   +  P     S E    +     +V       
Sbjct: 408 LEQELTTVLEFIISLLRDYGLDDFYLELSTKDPNKFVGSDEIWERSTEILERVATKSGLE 467

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P P+                      A      + +  D++    ++S   ++    F
Sbjct: 468 LVPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----F 503

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               +++L     +   DG K   + +     G++     V+   + G    W   +AP 
Sbjct: 504 NLPERFNL----EYTAPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPH 556

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++  I +        +  E   A L   G     D   +++  +         P  ++VG
Sbjct: 557 QVVGIPVA---DEFNEYLENFAADLRAQGIRAEVDTSDDRMQKKIRNHTTGKVPFMLLVG 613

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + V  + V  +         +  E+ +   S+  +  R
Sbjct: 614 GRDVEANAVSFRFLDGTQVNGVPREDALRIISNWIAERR 652


>gi|206889362|ref|YP_002248875.1| prolyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226701352|sp|B5YKW0|SYP_THEYD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206741300|gb|ACI20357.1| prolyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 571

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 103/227 (45%), Positives = 142/227 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P ++E P      SH LML+ G + Q + G++ +LPLG + L+ +N I++EE
Sbjct: 1   MRYSKLFIPTMREIPSGINAISHILMLKAGYVRQLAAGLFIFLPLGWRVLNKINMILKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+S+P L  A++W E+GR+ +  +EM RL DR  + M  G THEE+MT I   
Sbjct: 61  MERIGAQEISMPILHPAEIWQETGRWYTIKEEMFRLKDRTGRDMCLGMTHEEIMTWIASK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  +YQIQ K RDE RPR GV+R+REF+MKD+YSFD+  EG   SYN    +
Sbjct: 121 EIKSYRQLPQIWYQIQTKLRDEARPRGGVLRTREFIMKDSYSFDIDWEGLDKSYNLHAEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF + GLK   + ++ G +G   SHEF+     GE ++      
Sbjct: 181 YHRIFTKCGLKYYQVESDPGIMGDMESHEFMAPTPAGEDEIVLCDSC 227



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 106/191 (55%), Gaps = 9/191 (4%)

Query: 254 APYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
              A  +D+   K  D  P+        + IEVG+IF  GTKY+ P+ A F   DGK+  
Sbjct: 370 HFDAQWADIRRVKEEDRCPKCGNSLKIEKAIEVGNIFKLGTKYTEPLHAYFLDKDGKEKP 429

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MGSYGIG  RV AA IE +HD  GIIWP S++PF I +I +   D+      E++Y +
Sbjct: 430 IIMGSYGIGPARVAAAAIEQNHDSDGIIWPKSISPFDIEIIPLNMDDEKTVSIAEELYEK 489

Query: 372 -------LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                   +    +V  DD  E+ G +F  ADL+G P+Q+++G K + ++KVEIK R T 
Sbjct: 490 VTEIYNSFADRHMEVLIDDRDERPGVKFKDADLIGIPIQIVIGKKGLKENKVEIKKRRTK 549

Query: 425 IREDMSLEEVI 435
             + +S+ + +
Sbjct: 550 ETKKVSVNKAV 560


>gi|325972766|ref|YP_004248957.1| prolyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324028004|gb|ADY14763.1| Prolyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 588

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/227 (43%), Positives = 135/227 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+E P  A+   ++ +LR G I Q   GI+S LP G  A   +  IIR+E
Sbjct: 1   MRMSRLFSKTLREAPNGADSKGYEYLLRAGFIRQLGAGIFSLLPFGFNATKKIEQIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +  AD+W E+GRY S  KEM R +DR  + M+   THEE +TD+ R 
Sbjct: 61  MNAIGGQEILMPLVNPADIWKETGRYYSIDKEMSRFSDRVGRDMVLAMTHEEAVTDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RD+ RPR G++R REF MKD+YSFD+  EG    Y   + +
Sbjct: 121 EIDSYKRLPLLVYQIQTKWRDDPRPRAGLIRVREFTMKDSYSFDVDQEGLDAQYAAHYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R GL  I + A+SG +GG +SHE++ L+  GE  +      
Sbjct: 181 YFRIFSRCGLPVIVVGADSGMMGGKISHEYMYLSSIGEDTIITCPSC 227



 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 5/182 (2%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                    S++G+EVG+IF   T+YS  M+ +++   G    V MGSYGIG  R++A +
Sbjct: 399 CPECSKPLSSSKGVEVGNIFQLNTRYSESMNCSYQDEGGLRKPVIMGSYGIGVGRLLACL 458

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E+  D +G+  P SVAP ++ L+++        +  E+IY +LS  G +V +DD  E  
Sbjct: 459 AENYSDEQGLSLPISVAPMQVHLVSLVKD----AEIGEQIYNKLSDAGIEVLYDDRKESA 514

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-DMSLEEVINYASHRFSNNRP 447
           G +FA ADL+G P+++ +G++ + + KVE+K R          L  V+       +    
Sbjct: 515 GVKFADADLIGLPIRITLGNRSLKEGKVEVKLRRNLEESFSFELASVVEETKALIAKLEA 574

Query: 448 VL 449
            L
Sbjct: 575 EL 576


>gi|146340273|ref|YP_001205321.1| putative threonine tRNA synthetase (fragment) [Bradyrhizobium sp.
           ORS278]
 gi|146193079|emb|CAL77090.1| putative threonine tRNA synthetase (fragment) [Bradyrhizobium sp.
           ORS278]
          Length = 409

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 147/432 (34%), Gaps = 42/432 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L    I + + G+  W P G      +   IR +  R G  E+  P L  
Sbjct: 5   DHRSLGPRLDL--WHIQEDAPGMVFWHPRGHALYRVLENFIRGKMRRLGYAEVRTPQLLP 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            DLW++SG ++ +G +M  L    ++AM   P        IF  +++S+R LP  + +  
Sbjct: 63  LDLWMQSGHWEKFGAQMFALG-EGERAMALKPMSCPCHVQIFNRNLRSWRELPLRYAEFG 121

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              RDE      G+MR+R F   DA+ F    +       +       ++   G  +  +
Sbjct: 122 SCHRDEPSGALHGLMRTRGFEQDDAHVF-CRADDVAGEVARFAALLSEVYAAFGFDAPEV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P     S      A+    +   S        P E                    
Sbjct: 181 SLSTRPQLRAGSDASWDWAEQALAEAARSCGLSYAIQPGEG------------------- 221

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            A         L D L  + +     ++       G  Y     A       +   V + 
Sbjct: 222 -AFYGPKLEFALRDRLGRSWQCGTVQLDSVLPERLGASYVAAHGA-------RATPVLIH 273

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              +G++    A++   H G    W   ++P +++++ I        D   K+   L   
Sbjct: 274 HAVLGSIGRFIAMLLEHHAGALPFW---LSPDQVAVVPITRD---QLDDALKLRELLFSA 327

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                    GE +  +   A     P+  +VG++  +   V ++ R  G    ++ +  +
Sbjct: 328 ELRAVLSADGETLSRRIVAAHAASIPVVAVVGAREAAQGTVSLRERD-GTTSVLTWDRAV 386

Query: 436 NYASHRFSNNRP 447
           +    R   NRP
Sbjct: 387 STLRER---NRP 395


>gi|283455556|ref|YP_003360120.1| proS Prolyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283102190|gb|ADB09296.1| proS Prolyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 605

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 1/281 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE  
Sbjct: 1   MSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
              A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  SIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   + 
Sbjct: 181 RIFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPEA 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           I           P    + + ++ +  +   + R   R  +
Sbjct: 241 IDCTDTPAAEKRPTPDAATI-DKMVEFANANHPRSDGRAWQ 280



 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+ HD KG+ 
Sbjct: 438 RGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAETHHDDKGLA 497

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
           WP  +AP ++ ++     D    +A E++ A L   G +V +DD  +   G +F  A+L+
Sbjct: 498 WPAVIAPAQVHVVA-TGKDAAAFEAAEQLIAELEAKGIEVIFDDRKKVSPGVKFKDAELI 556

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G PL  + G   V++  +E++ R     E + + +     + R +
Sbjct: 557 GVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAAQVIADRVA 601


>gi|307106736|gb|EFN54981.1| hypothetical protein CHLNCDRAFT_24199 [Chlorella variabilis]
          Length = 572

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 167/464 (35%), Gaps = 79/464 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L +++E     ++A +  +  T +I           P G    + V + +     
Sbjct: 87  FSRWYLDVVRE----CQLADYGPVRGTMVIR----------PYGYAIWEGVQSHLDRAFK 132

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P L   + L  E+   + +  E+  +        ++ ++  PT E ++  +
Sbjct: 133 ETGHQNAYFPQLIPLSFLQKEADHVEGFAPELALVTKGGGKELEEPLVVRPTSETIVNHM 192

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T + ++    +M
Sbjct: 193 FAQWVQSYRDLPLLINQWANVHRWEMRTR-PFVRTLEFLWQEGHTAHATAQEAEEETIRM 251

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               LR++      ++ + A     G     E    A+                      
Sbjct: 252 ----LRVYEDF---AVNVAAMPVVAGRKSRIESFAGAN---------------------- 282

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A   D    +     P  ++  AR    G     G  ++  
Sbjct: 283 -------------CTYTIEAMMGDRRALQARRRAPWGRQEGARL--AGTSHNLGDNFARA 327

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +    G+  YV   S+G+ + R+V  +I +  D  G+  P  +AP ++ ++ I   
Sbjct: 328 FGTRYLDEGGQLQYVHQSSWGV-STRMVGGIIMTHGDDAGLRLPPRLAPTQVVIVPILKK 386

Query: 358 D---QVCRDACEKIYARLSKVGCDVFWD---DMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           D   +    A +++ A L   G  V  D   D     G +F   ++ G P++V VG + V
Sbjct: 387 DVDGEAVMAAVQRLEAALRGAGVRVQVDASTDR--TPGWKFNQYEMKGVPVRVEVGPRDV 444

Query: 412 SDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPVL 449
                    R      G +  + LE    + + +    + +  L
Sbjct: 445 EQGTCVTARRDVAGKEGKQFGVPLEPAAFVQHVTALLEDIQAAL 488


>gi|153812461|ref|ZP_01965129.1| hypothetical protein RUMOBE_02860 [Ruminococcus obeum ATCC 29174]
 gi|149831386|gb|EDM86474.1| hypothetical protein RUMOBE_02860 [Ruminococcus obeum ATCC 29174]
          Length = 657

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 144/441 (32%), Gaps = 38/441 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +A+   H  + R   I        +G+   +P G   +  +   I +E+ + G + 
Sbjct: 231 EQMEEAKKRDHNKLGREMKIFTTVDVIGQGLPLIMPNGVIMMQELQRWIEDEETKRGYVR 290

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
              P +  +DL+  SG +D Y   M  L D   + +     P        ++++   SYR
Sbjct: 291 TKTPLMAKSDLYKISGHWDHYKDGMFVLGDEETDKEVFALRPMTCPFQYYVYKAEQHSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  + +    FR+E      G+ R R+F + + +   + P+     +           
Sbjct: 351 DLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQMVKEFKDCIALAQYCL 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             LG++                   +   D    + +  +  +      +     +   L
Sbjct: 410 QVLGVEEDVTY-------------HLSKWDPNNREKYIGEPEVWNETEEDIRQMLE--EL 454

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N    +     A      +    +   +   +     +                  +   
Sbjct: 455 NIPFTEDVGEAAFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ--------FDMYYIDE 506

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +G K     +    +G      A +   + G    W   + P ++ +I I    +     
Sbjct: 507 NGDKKRPCIIHRTSMGCYERTLAWLIEKYAGMFPTW---LCPEQVRVIPI---SEKFNAY 560

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+ A++ + G     D   E++G +   A L   P  ++VG+K   + KV ++ R  G
Sbjct: 561 ADKVEAQMKEAGIRCSVDRRSEKMGYKIREARLERVPYMLVVGAKEEEEGKVSVRSRYLG 620

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 L E I        N 
Sbjct: 621 DEGMKDLGEFIAAIKEEIKNK 641


>gi|55379994|ref|YP_137844.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55232719|gb|AAV48138.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 672

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 151/440 (34%), Gaps = 45/440 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQH----SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E  R AE   H+ + +   +         G+  + P G+K L+ ++  +       G  E
Sbjct: 263 EQRRKAEERDHRKIGQEMDLFSIDETTGPGLPLYEPNGKKILNELSDYVAGLNRDAGYDE 322

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   +LW +SG Y++Y  +M  L D ND+     P +      IF  +  SYR+L
Sbjct: 323 VETPHVFRTELWKKSGHYENYVDDMF-LLDVNDEEYGLKPMNCPGHATIFEQNSWSYRDL 381

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +++    +R E R    G+ R+  F + D + F + P+  +          L     
Sbjct: 382 PVRYFEDGKVYRKEQRGELSGLSRTWAFTIDDGHLF-VRPDQIEEEVLATVDIILDTLDT 440

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             L    ++  + P       E    A++    V   +D        +            
Sbjct: 441 FNLDY-TVQFATRPEKSVGGDEIWEKAESQLESVLEEQDIDYVVEEGDG----------- 488

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      +    D+L  +       ++                 ++ G D 
Sbjct: 489 ---------AFYGPKIDFAFEDALGRHWDGPTVQLDFNMPER--------FDLSYTGEDN 531

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           ++H  V +     G+      V+   ++GK    P  +AP +I L+ +   +      CE
Sbjct: 532 EEHRPVMIHRALYGSYERFFMVLTEHYNGKF---PPWLAPEQIRLLPVSDDNIT---YCE 585

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I   L      V  +D    +G +   A     P   ++G        + ++ R     
Sbjct: 586 EIQDELDD--FRVTIEDRSWTVGKKIQQAHDDRVPYMCVIGDNEEEAGTISVRDRKEREE 643

Query: 427 EDMSLEEVINYASHRFSNNR 446
           +D+ + E  ++        R
Sbjct: 644 KDIDIAEFRDHLETEVEQQR 663


>gi|72383677|ref|YP_293032.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|114152229|sp|Q46GR7|SYP_PROMT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72003527|gb|AAZ59329.1| prolyl-tRNA synthetase, bacterial [Prochlorococcus marinus str.
           NATL2A]
          Length = 596

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 145/237 (61%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +A+I SH+L++R G + + + GIY+++PL  K L  + +I+ EE
Sbjct: 1   MRVSRLMLNTLRDVPAEADIISHQLLVRGGYVKRLTGGIYAYMPLLWKVLKKITSIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G ++  +P LQ +++W  SGR+ SY K    M  L DR  K +  GPTHEEV+T I
Sbjct: 61  LSTKGCLQTLLPQLQPSEIWERSGRWKSYTKGEGIMFSLKDRQGKELGLGPTHEEVITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF       + +Y+ M
Sbjct: 121 ISQTIHSYKQLPINIFQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANENDLQSTYSDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y  IF + GL  + + A+SG IGG  S EF+V A++GE  +  S D        
Sbjct: 181 RNAYENIFTKCGLDFVCVDADSGAIGGAASQEFMVTAESGEDLILISSDSKYGANQE 237



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 119/283 (42%), Gaps = 9/283 (3%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  K +   + +       + G+ +IP     G IG DLS   +  +   E +     D 
Sbjct: 318 QELKQNVLDIRIISNEDMQKQGISNIPF----GFIGPDLSDNLLAQSKAWEKKFIRIADN 373

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV----HNEKLFDSLPENKRVSARGIE 283
               + S     +                                      K    RGIE
Sbjct: 374 SAKDLKSFICGNNIKDEHKIFYNWNLINTVQMICDIRKAKPGDRCIHDKTQKLQECRGIE 433

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +GHIF  GTKYS  ++ATF    G + +  MG YGIG  R+  A +E +HD  GIIWP S
Sbjct: 434 IGHIFQLGTKYSKSLNATFTNEKGVEDHFWMGCYGIGISRLAQAAVEQNHDDLGIIWPTS 493

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +APF + +I     +   +   E IY +L +   DV  DD  E+ G +F  ADL+G P +
Sbjct: 494 IAPFTVIIIIANIKNNDQKCLAEDIYQKLIQDRVDVLLDDRDERAGIKFKDADLIGIPWR 553

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G +  S   VE+ +R T I E + L  V    S  F+  +
Sbjct: 554 IVAG-REASSGLVELHNRKTKITELLDLNSVFKKLSEEFNTEK 595


>gi|312139482|ref|YP_004006818.1| threonine-tRNA ligase thrs [Rhodococcus equi 103S]
 gi|311888821|emb|CBH48133.1| threonine-tRNA ligase ThrS [Rhodococcus equi 103S]
          Length = 683

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 137/445 (30%), Gaps = 57/445 (12%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   +  
Sbjct: 257 EAERRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGIIRQEMENYSRKRHVEEGYEFVYS 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M      +++                 P +  +   +F 
Sbjct: 316 PHITKGHLYEVSGHLDWYKDGMFPAMHIDEELNEDGTVRKPGQDYYLKPMNCPMHNLVFG 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +       
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CTKEQMRDELTTTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              L +    GL    +   +      +G D   E    A     +V  +      P P 
Sbjct: 435 KFVLGLLKDYGLDDFYLELSTKNPDKFVGDDALWE---EATETLREVGEASGLNLVPDPG 491

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + ++ D+L  + ++S   ++    F    ++
Sbjct: 492 --------------------GAAFYGPKISVQVQDALGRSWQMSTIQLD----FNLPERF 527

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  + G+DG K   V +     G++     V+   + G    W   +AP ++  I 
Sbjct: 528 ----DLEYTGSDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIP 580

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +   D    +  +L   G     D   +++  +         P  ++ G + V  
Sbjct: 581 VA---EAFEDHLFDVVKQLKAAGVRAEVDVSDDRMQKKIRNHTTQKVPFMLLAGERDVEA 637

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
             V  + R       + + + +   
Sbjct: 638 GAVSFRFRDGTQVNGVPVADAVETI 662


>gi|149200279|ref|ZP_01877300.1| threonyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149136643|gb|EDM25075.1| threonyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 603

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 145/452 (32%), Gaps = 44/452 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L    E  R AE   HK + +   I     +  KG+  W+P G    D +    RE + +
Sbjct: 173 LQSFLERRRIAEQFDHKKLGKELDIFHFDEKVGKGLALWMPNGTIIRDEIEKYAREMEMK 232

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-------RNDKAMIYGPTHEEVMTD 116
            G   +S P + S  L+  SG    Y   M    +        N +       +      
Sbjct: 233 YGYQRVSTPHIASEKLFQTSGHLPYYADSMFPPMELNEGDDAENSEKYYLKAMNCPYHHL 292

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+ +  +SY+ LP+   +    +R E      G++R R   M DA+ + LT +  +  + 
Sbjct: 293 IYSARPRSYKELPYRLCEYGTCYRYEKSGELSGLLRVRCMTMNDAHVY-LTEDQFEEEFR 351

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            M   Y+  +          R                     ++  F     +     + 
Sbjct: 352 SMVKMYMEFYETFKFSDYSFRLSVRD----------------DSDKFVGDPAVWDQAEAL 395

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                D +             A      + +  + +   + +S   ++    F    K  
Sbjct: 396 LAKVMDELG--LEYFVGEGEAAFYGPKIDVQFKNLMGREETLSTIQVD----FQSACK-- 447

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              +  +  +D  +   + +    +       + I   + G    W    AP ++ ++ +
Sbjct: 448 EKFALKYVDSDNTEKEPIIIHRAPLSTHERFISFIMEYYGGAFPAW---CAPVQVCILPV 504

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                 C +    I   L++    V  DD       +         P+ +I+G + V+D+
Sbjct: 505 ---QDSCMEFTNSIANELTRDLYRVEIDDSNNTFNKKIRTNTKRKIPILLIIGEQEVADN 561

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V ++   +  +  +S +E +          +
Sbjct: 562 TVTVRRYGSRDQITVSRDEFVAIFKAEVKERK 593


>gi|266623074|ref|ZP_06116009.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288865169|gb|EFC97467.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 691

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 157/447 (35%), Gaps = 35/447 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   +     RD      +L L    +    +G+   +P G K +  +   I +E+ 
Sbjct: 268 LNEYLEYLANIKNRDHNKLGRELELFA-TVDVIGQGLPLLMPKGAKIIQTLQRWIEDEEE 326

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
           + G +    P +   DL+V S  +D Y + M  L D   +D+     P        +++ 
Sbjct: 327 KRGYMRTKTPLMAKKDLYVISDHWDHYKEGMFVLGDEEKDDEVFALRPMTCPFQYYVYKQ 386

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             KSYR+LP  + +    FR+E      G+ R R+F + + +   + P+  +  +     
Sbjct: 387 SPKSYRDLPCRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLV-VRPDQLEEEFKGCVD 445

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                   LGL+             D+++               + +  D    +     
Sbjct: 446 LAKYCLTTLGLEE------------DVTYRMSKWDPEKADHYLGNAEMWDEVEAAMRKIL 493

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           DDI    +      A Y    D+  + ++      K  +   I            +    
Sbjct: 494 DDIGIEYTEEVGEAAFYGPKLDIQAKNVYG-----KEDTMITI------QLDMFLAERFD 542

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +F   DG K     +    +G      A +   ++G    W   + P ++ ++ I    
Sbjct: 543 MSFVDKDGTKKRPYIIHRTSMGCYERTLAWLIEKYEGAFPTW---LCPEQVRVLPI---S 596

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  EK+ + L   G     D+  E+IG +   A L   P  ++VG K   D  V +
Sbjct: 597 EKYHDYAEKVESELKSNGILATVDERAEKIGYKIREARLAKLPYMLVVGQKEEEDGLVSV 656

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     SL + I+  S      
Sbjct: 657 RSRFNGDEGQKSLSDFIDAISREIRTK 683


>gi|159039093|ref|YP_001538346.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|189083509|sp|A8LYE7|SYP_SALAI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157917928|gb|ABV99355.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 584

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 134/233 (57%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD V  +IR E
Sbjct: 3   LRMSTLLLRTLREDPADAEVPSHRLLLRAGYLRRAAPGGYTWLPLGKLVLDRVAEVIRTE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L  A+ +  SGR+  YG +++ L DR     +  PTHEE    + + 
Sbjct: 63  MLAIGDQEVHFPALLPAEPYRTSGRWTEYGDDLITLVDRRGAEHLLAPTHEEPAALLVKE 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR+ P   +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +
Sbjct: 123 LFTSYRDFPVGIFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRSA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y +IF RLGL    + A SG +GG  S EF+  +  GE  V+      D    
Sbjct: 183 YQKIFARLGLDYAVVHAVSGAMGGSASEEFLATSKIGED-VYVGCTACDHTAN 234



 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 7/183 (3%)

Query: 264 NEKLFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             +  D  P  +       RGIE+GHIF  G +Y+   +    G +G+     MG YGIG
Sbjct: 402 EVRPGDPCPACRTGQLTLRRGIEIGHIFQLGRRYTDAFTVDVLGPEGQSVRPTMGCYGIG 461

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R VA + E  HD +G++WP  VAP  + L+      QV  +    +  RL++ G  V 
Sbjct: 462 VSRAVAVIAEQHHDERGLVWPTEVAPCDVHLVAAGRGPQV--ETALGLGNRLAEAGLRVL 519

Query: 381 WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD G    G +F  A+L+G P  V+VG + ++D   E++ R +G R D+ ++ ++ +  
Sbjct: 520 VDDRGHVSAGVKFTDAELVGIPRTVVVGRR-LADGYAEVRDRPSGKRADVRVDALVEHLV 578

Query: 440 HRF 442
           +  
Sbjct: 579 NEV 581


>gi|326431769|gb|EGD77339.1| threonyl-tRNA synthetase isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 766

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 143/433 (33%), Gaps = 41/433 (9%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E  +   +A    H+ + R          S G   + P G +    +   +RE+    
Sbjct: 311 LKEWKKLMEEAAKRDHRKIGREQQLFFFDDLSPGSCFFEPRGARIYRTLMEFMREQYITR 370

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW  SG +  Y + +      N +     P +      +F    +S
Sbjct: 371 GFEEVVTPNIFNKRLWETSGHWQHYAENIFSFEVEN-ETFAMKPMNCPSHCVMFSHRNRS 429

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP       +  R+EL     G+ R R F   DA+ F   PE  +            
Sbjct: 430 YKELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRPEQIEDEIKGCLAFLNA 488

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P       E    A+    +            P +        
Sbjct: 489 VYGTFGFTY-ELNLSTRPEKFLGDVEVWERAEASLAKALDEFGHEWKLNPGDG------- 540

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+L  + + +   ++    F    +++L      K
Sbjct: 541 -------------AFYGPKIDITVHDALKRSFQCATIQLD----FQLPIRFNLEYVPARK 583

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                   V +    +G++  + A++   + GK   WP  ++P +  ++ I         
Sbjct: 584 EEGVVYRPVIIHRAILGSVERMFAILCEHYAGK---WPFWLSPRQAQVVPIHP---EFNK 637

Query: 364 ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E++       G  V  D D    +  +   A +  +   ++VG        V ++ R 
Sbjct: 638 YAEEVRMFFHTHGFAVDVDADDSLTLQKKVRRACVEQYNFILVVGEAECKKRTVNVRTRD 697

Query: 423 TGIREDMSLEEVI 435
                ++SL+E++
Sbjct: 698 GSRIGELSLDELL 710


>gi|116748707|ref|YP_845394.1| prolyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|152112959|sp|A0LHQ7|SYP_SYNFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116697771|gb|ABK16959.1| prolyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 581

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 104/229 (45%), Positives = 143/229 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+  L E P++AE  SH L+LR   IH  + G+YS LPLG +  + + AI+REE
Sbjct: 1   MRYSKYFIHTLFEVPKEAETPSHILLLRGCYIHPVAAGVYSLLPLGHRVAEKIKAILREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    +E+++P L  A+LW +S RY   G+E+ R+ DR D+  +   THEEV+TDI R 
Sbjct: 61  LNAIEGLEVTMPVLNPAELWKKSSRYYDIGQELFRIKDRKDREFVLAMTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   YQIQ K RDE RPR G++R REF M DAYSF          Y ++F +
Sbjct: 121 FLRSYRHLPVMLYQIQTKIRDEARPRAGLLRVREFFMNDAYSFHPDFADLDAYYPRIFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           YLRIF R GL ++P+ A+SG +GG  SHEF++ +  GE +         
Sbjct: 181 YLRIFTRCGLTTVPIEADSGIMGGTGSHEFMLESPNGEDRFVVCTQCDY 229



 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +   N       ++    +      A  ++V +        E      RGIE+GH F  G
Sbjct: 356 VAGGNAPDVHYRNVVCGRDFTPFDAADLAEVRDGDRCTRCAEGILRIRRGIELGHTFKLG 415

Query: 292 TKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           TKY  +  M AT+  A G    V MG YGIG  R++A+ +E  HD  G+ +P S+APF++
Sbjct: 416 TKYTAAESMDATYLDAAGNQQRVVMGCYGIGVERLMASAVEQWHDEGGMSFPYSIAPFQV 475

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L ++    +   +A + +Y RL     D  +DD  E  G +   ADLLG P++V+V  K
Sbjct: 476 ILCSLGRKPE-ILEAAQALYERL-GAHYDTIYDDRDESPGVKLKDADLLGVPIRVVVSQK 533

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            +   +VEIK R TG+      +E++       ++ +P
Sbjct: 534 LLQKGEVEIKVRRTGVVIVCPRDELLETLERIVADLQP 571


>gi|317057674|ref|YP_004106141.1| threonyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315449943|gb|ADU23507.1| threonyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 648

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 148/448 (33%), Gaps = 35/448 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L   T  +    +G+   LP G K +  +   I +E+ 
Sbjct: 229 LEEHLKQMEEAKLRDHNKLGRELEYFT-TVDYIGQGLPILLPKGAKVIQTLQRWIEDEEY 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFR 119
           + G      P +   +L+  SG +D Y   M  L D +D+        P        +F 
Sbjct: 288 KRGYQLTKTPFMSKRELYKISGHWDHYRDGMFILGDPDDETKECFALRPMTCPFQYQVFL 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SYR+LP    +    FR+E      G++R R+F + + +   L PE  +  +    
Sbjct: 348 NRKRSYRDLPMRLGETSTLFRNEDSGEMHGLIRVRQFTISEGHLI-LRPEQLEEEFKGCL 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    +GL              D+S+ F           +                
Sbjct: 407 DLAKYCLETIGLAE------------DVSYRFSQWDPANPNNKYEGTAEQWEEAQGAMKK 454

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D I L+  +    A  A      + ++ +   +   +    I++        + +   
Sbjct: 455 ILDDIGLDYEIGIDEA--AFYGPKLDIQIKNVFGKEDTLITIQIDM--------QIAKKF 504

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DGK      +    +G      A++   + G   + P  +AP ++ ++ IK  
Sbjct: 505 GMEYVDKDGKMKMPYIIHRTSVGCYERTLALLIEKYAG---VLPLWLAPEQVRILPIKP- 560

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    +   +  +G  V  D   + IG +   A     P   I+G   V D  V 
Sbjct: 561 --EHNDYAYDLAEEMRDLGMRVEVDAEDDNIGPKIKQARFDRVPYMFIIGDNEVKDGTVT 618

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G    M   + I          
Sbjct: 619 VRSRKEGELPAMPAADAIAKLKEEIDTK 646


>gi|229552422|ref|ZP_04441147.1| proline--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258539792|ref|YP_003174291.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|229314159|gb|EEN80132.1| proline--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257151468|emb|CAR90440.1| Prolyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 576

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/231 (43%), Positives = 145/231 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVYAYLPLAERVLSRIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPALLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLNTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF RLGL+   +  + G +GG  S EF  +A  GE  +  S       
Sbjct: 181 YTNIFDRLGLRYRTIIGDGGAMGGKDSKEFSAIASIGEDTIVYSDSSDYAA 231



 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+YS  M A F   +G+   + MGSYGIG  R+++A+ E   D  G+I
Sbjct: 404 RGIEIGHIFKLGTRYSETMGADFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADDHGLI 463

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+G
Sbjct: 464 WPTTIAPFDIHLIPVNLKREEQKTLTAAIGTMLEDAGYSVLVDDRNERPGVKFADSDLIG 523

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            PL+V VG K V +  VE+K R TG   ++  EE+I+   
Sbjct: 524 IPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISSIK 562


>gi|229491433|ref|ZP_04385257.1| prolyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229321718|gb|EEN87515.1| prolyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 581

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 174/385 (45%), Gaps = 26/385 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   D +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRDPYEASNRWTEYGPNLFRLKDRKGNDYMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REFLMKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFLMKDSYSFDLTDEGLTESYQAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFD 240
            +IF RLG+K + + A SG +GG  S EF+  ++ GE       +      + +  T   
Sbjct: 184 EKIFTRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTVVP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D I  + + E      A T  +     + +          G ++G               
Sbjct: 244 DSIPFDGLPEAKVYDTANTPTIDTLVDWAN----------GADLGR-------------- 279

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-ISLINIKAHDQ 359
           T   AD   + +       G   ++   I    +        S+ P + + +      + 
Sbjct: 280 TVTAADTLKNIMVKTRLPGGEWELLGIGIPGDREVDEKRLEASLEPAEFVMITETDFKNN 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDM 384
                       L   G     D  
Sbjct: 340 PFLAKGYIGPKALQANGVRYLVDPR 364



 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 6/166 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE+GH+F  G KY+   +      +GK     MGSYG+G  R+VA + E  HD KG
Sbjct: 417 SARGIEIGHVFQLGRKYTDVFTVDVLAENGKPVRPTMGSYGVGVSRLVAVIAEQHHDEKG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP  V+P  + L+ I   D+  R+  E + A+L + G +V  DD     G +F  ++L
Sbjct: 477 LRWPAEVSPADVYLV-IANKDETAREGAEGLAAQLDRAGLEVILDDRKASPGVKFKDSEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM----SLEEVINYAS 439
           +G PL V+VG +  +D KVEI+ R TG   ++    ++EE+I+   
Sbjct: 536 IGVPLIVVVG-RGWADGKVEIRDRFTGESREIDANSAIEEIISAVR 580


>gi|167759625|ref|ZP_02431752.1| hypothetical protein CLOSCI_01983 [Clostridium scindens ATCC 35704]
 gi|167662751|gb|EDS06881.1| hypothetical protein CLOSCI_01983 [Clostridium scindens ATCC 35704]
          Length = 480

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 164/450 (36%), Gaps = 78/450 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R + F     +  R+AE+  +             KG  ++LP G    + + A + +   
Sbjct: 14  RDEDFAQWYTDVVREAELCDYS----------SVKGCLNYLPNGYAIWELIQADLDKRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
            TG   + +PTL    L   E+   + +  E+  +     +R  + +   PT E +  D+
Sbjct: 64  ETGVENVYLPTLIPESLLEKEADHIEGFAPEVAWVTHGGMERLQERLCIRPTSETLFCDL 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SYR+LP  + Q     R E +     +RSREFL ++ ++   T E ++    +M
Sbjct: 124 WAKTVQSYRDLPKVWNQWNTVLRWE-KTTRPFLRSREFLWQEGHTIHATYEEAEERTIQM 182

Query: 178 FVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              Y   +   L +  +         G    HE    A                      
Sbjct: 183 LHVYEDCYKETLAIPFVS--------GRKAEHEKFAGA---------------------- 212

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                              Y   + +H+               + ++     +FG+ +  
Sbjct: 213 ----------------QDTYTIEALMHD--------------GKALQSATSHFFGSGFPD 242

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                +   + +   V   S+G  + R + A+I    D  G++ P  VAP +  +I I  
Sbjct: 243 AFGIKYVDKNNQLQSVYETSWG-WSTRSIGALIMVHGDDSGLVLPPHVAPVECRIIPIAQ 301

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   D    +   L K G  V  DD  +  G +F+  ++LG P ++ +G K +  ++V
Sbjct: 302 HKEGVLDRSFALLDELKKAGYRVKIDDSDKSTGWKFSEQEMLGIPTRIEIGPKDIEKNQV 361

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +  R    +  +SL+E+           +
Sbjct: 362 VVVRRDNREKIVVSLDEIAVKLRDILEQEQ 391


>gi|325479231|gb|EGC82327.1| proline--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 572

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/225 (46%), Positives = 154/225 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E+P DAE ASHK + R   I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MRLSKYYMPTLREDPVDAETASHKYLTRGAFIRKQASGVYSFLPLGKKVINKIEAIVRES 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM +L DR+++    GPT EE  TD+ ++
Sbjct: 61  MENHDSIEVSTSILQAKEIWETSGRWETFGPEMFKLEDRHNRQYCLGPTAEEAFTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD + EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDASYEGLELSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y+  F ++GL+   +  +SG +GG  SHEFI L++TGE  +  + 
Sbjct: 181 YVEAFDKMGLEYKIVEGDSGSMGGRKSHEFIALSETGEGVILYTD 225



 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 11/247 (4%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPI  DL  E  VL D   T++       +  + +  T++    +      +       
Sbjct: 333 TGPI--DLKGEVRVLVDESLTKI------KNLVVGANKTNYHYKNANFGRDFKGEVVEDL 384

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +    +  +D     K  +ARGIEVG+IF  GTKYS  + A F   +GK     MGSYG
Sbjct: 385 LTAKEGDMAYDGSGILK--AARGIEVGNIFQLGTKYSESLEAYFLDENGKQQPFIMGSYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R V+A++E  HD KGI+WP SVAPF+  +  I  + +  ++  E+IY +L +   D
Sbjct: 443 IGISRSVSAIVEQYHDDKGILWPTSVAPFEAIVTIINPNKEDQKELGEEIYNKLKEERID 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +F   DL+G P ++ VG K  SD  VE   R     E ++++  I   
Sbjct: 503 VLLDDRKERAGVKFNDRDLIGIPYRITVG-KDASDEIVEYSTRREMENEKITVDTAIEKI 561

Query: 439 SHRFSNN 445
                 +
Sbjct: 562 ISSVKKD 568


>gi|241955201|ref|XP_002420321.1| threonyl-tRNA synthetase, cytoplasmic, putative [Candida
           dubliniensis CD36]
 gi|223643663|emb|CAX41396.1| threonyl-tRNA synthetase, cytoplasmic, putative [Candida
           dubliniensis CD36]
          Length = 706

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 148/440 (33%), Gaps = 43/440 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A    H+ + R     + ++ S G   WLP G +  + +   +R E  + G  E+  P
Sbjct: 295 AEAAERDHRKIGREQELFIFNEMSPGSAMWLPHGARIYNTLVDTLRTEYRKRGYEEVITP 354

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + S  LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 355 NMYSTKLWETSGHWQNYKENMFSFEVEK-ETFGLKPMNCPGHCILFKSRERSYRELPWRV 413

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +        +F    +++   G +
Sbjct: 414 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTT-DQIGTEIAGVFDFLKKMYGIFGFE 472

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       E    A+    Q                             E 
Sbjct: 473 F-KMELSTRPEKYVGDLETWNSAEKKLEQALND------------------FLGEGKWEL 513

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L               
Sbjct: 514 NPGDGAFYGPKIDIMISDALKRWFQCATIQLD----FQLPQRFELEYK---SDKGPNTRP 566

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++   + GK   WP  ++P ++ ++ +        D  +K+  +
Sbjct: 567 VMIHRAILGSVERMTAILTEHYKGK---WPFWLSPRQVLIVPVGPK---YYDYAQKLQKK 620

Query: 372 LS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIR 426
           L+         D  G  +  +     L  +    IVG    +   V +++R      G  
Sbjct: 621 LNDDYFFYCDVDVSGNTLPKKIRTGQLYKYNFIFIVGEDEENSESVNVRNRDIPEEQGKN 680

Query: 427 EDMSLEEVINYASHRFSNNR 446
             +  ++V+        + R
Sbjct: 681 AMVKFDDVVKQMVALRESKR 700


>gi|46108732|ref|XP_381424.1| hypothetical protein FG01248.1 [Gibberella zeae PH-1]
          Length = 745

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/451 (15%), Positives = 144/451 (31%), Gaps = 42/451 (9%)

Query: 8   LPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +    +A   +H+ +    +     + S G   +LP G +  + +  +I+ E  + 
Sbjct: 310 LEEYKHFLAEAAKRNHRKIGQDQKLFFFDEASPGSAFFLPHGVRIYNALMDLIKGEYQKR 369

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P +  ADLW  SG +  Y + M       +K     P +      IF     +
Sbjct: 370 DFEEVMSPNMYKADLWKTSGHWGHYEENMFTFEVEKEK-FGLKPMNCPGHCKIFAHSDVT 428

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP+         R+E      G+ R R F   DA+ F  T +  +      F     
Sbjct: 429 YKDLPWRMADFGTLHRNEFSGALSGLTRVRRFQQDDAHIF-CTVDQIREEIESAFDFLSS 487

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     ++  + P            A+    +   S                   
Sbjct: 488 VYGIFGFTF-KLKLSTRPEKYVGDIATWDAAEKKLEEALES----------------FAE 530

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--------- 294
              +  E      A      +  LFD+L    +     ++      F  +Y         
Sbjct: 531 KTGAKWEFNPGDGAFYGPKIDIALFDALKREHQCGTMQLDFNLPRRFKLRYVANKGETGV 590

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S   +       G    V +    +G+   +  ++     GK   WP  ++P ++ ++ +
Sbjct: 591 SDGSNPEEDLPAGYARPVMIHRAVLGSFERMFGILTEHFGGK---WPFWLSPRQVLVVPV 647

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  +++       G     D        +     L  F    +VG++     
Sbjct: 648 MP---AANDYAQEVQKIFKAKGLYSDVDLSSNTFQKKIRKGQLEQFNFIFVVGAEEKESR 704

Query: 415 KVEIKHRL---TGIRED-MSLEEVINYASHR 441
            + I++R    T  + + ++++E +      
Sbjct: 705 TLNIRNRDDQSTQAKGELVAIDEALEKLLQL 735


>gi|261839095|gb|ACX98860.1| prolyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 577

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/231 (42%), Positives = 133/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 85/166 (51%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G DV  DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDVLLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             + G++    +L+G  L +I+G + + + + E   R    ++ + 
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTLK 562


>gi|134098578|ref|YP_001104239.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008224|ref|ZP_06566197.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911201|emb|CAM01314.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 674

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/465 (16%), Positives = 141/465 (30%), Gaps = 62/465 (13%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           SK  L    E   +AE   H+     L L +    +   G+  + P G      +    R
Sbjct: 234 SKEKLDEHLELLAEAERRDHRRLGSELDLFS-FPDEIGSGLPVFHPKGGIIRKEMEDYSR 292

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIY 106
               + G   +  P +    L+  SG    Y   M      +++                
Sbjct: 293 RRHEQAGYEFVYSPHITKDALFKTSGHLSWYKDGMFPAMHLDEERDEDGEVRKPGQDYYL 352

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +      I+RS  +SYR LP   ++    +R E      G+ R R     DA+ +  
Sbjct: 353 KPMNCPFHNLIYRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-C 411

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQV 221
           TPE  +     +    L +    GL    +   +      +G D S      A     + 
Sbjct: 412 TPEQLQDELKSLLNFVLNLLRDFGLDDFYLELSTRNEEKYVGDDESWRV---ATEALREA 468

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
             S      P P                       A      + +  D+L    ++S   
Sbjct: 469 AESSGLELVPDPG--------------------GAAFYGPKISVQAKDALGRTWQMSTIQ 508

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIW 340
           ++    ++   ++       +  +DG       +     G++     V+   + G    W
Sbjct: 509 VD----YHLPDRF----ELEYTSSDGSRQRPIKIHRALFGSIERFFGVLTEHYAGAFPAW 560

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP ++  I I        D  +++   L   G  V  D   +++  +         
Sbjct: 561 ---LAPVQVVGIPIA---DEHLDHLDRVAKALRAKGIRVEVDASDDRMQKKIRNHTTQKV 614

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P  ++ G K V    V  + R       + ++  +   +H     
Sbjct: 615 PFLLLAGGKDVEADAVSFRFRDGTQINGVPVDTAVAALAHWVERR 659


>gi|57168347|ref|ZP_00367481.1| threonyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|57020155|gb|EAL56829.1| threonyl-tRNA synthetase [Campylobacter coli RM2228]
          Length = 602

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 152/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 195 KEHLRIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 253

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 254 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 312

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 313 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 371

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E    A     +    +             +   
Sbjct: 372 NLMKLFDFSY-EMEISTKPAKAIGDDEIWDTATKALKEALDEQGLKYGIDEGGGAFYGPK 430

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 431 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPERFKL 460

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ++  K   V +    +G+      ++     G+   +   +AP  + ++ I     
Sbjct: 461 EYTDSNNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPI---SD 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +   A+    P+ +++G + V+   V ++
Sbjct: 515 SHIAYAKEIQRALLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDEEVAKRSVALR 574

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 575 DRRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|325672628|ref|ZP_08152324.1| threonine--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325556505|gb|EGD26171.1| threonine--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 683

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 137/445 (30%), Gaps = 57/445 (12%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   +  
Sbjct: 257 EAERRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGIIRQEMENYSRKRHVEEGYEFVYS 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M      +++                 P +  +   +F 
Sbjct: 316 PHITKGHLYEVSGHLDWYKDGMFPAMHIDEELNEDGTVRKPGQDYYLKPMNCPMHNLVFG 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +       
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CTKEQMRDELTTTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              L +    GL    +   +      +G D   E    A     +V  +      P P 
Sbjct: 435 KFVLGLLKDYGLDDFYLELSTKNPDKFVGDDALWE---EATETLREVGEASGLNLVPDPG 491

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + ++ D+L  + ++S   ++    F    ++
Sbjct: 492 --------------------GAAFYGPKISVQVQDALGRSWQMSTIQLD----FNLPERF 527

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  + G+DG K   V +     G++     V+   + G    W   +AP ++  I 
Sbjct: 528 ----DLEYTGSDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIP 580

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +   D    +  +L   G     D   +++  +         P  ++ G + V  
Sbjct: 581 VA---EAFEDHLFDVVKQLKAAGVRADVDVSDDRMQKKIRNHTTQKVPFMLLAGERDVEA 637

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
             V  + R       + + + +   
Sbjct: 638 GAVSFRFRDGTQVNGVPVADAVETI 662


>gi|238061935|ref|ZP_04606644.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237883746|gb|EEP72574.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 582

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/226 (42%), Positives = 129/226 (57%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             L  L+E+P DAE+ SH+L+LR G I + + G Y+WLPLG+  LD V  ++R E    G
Sbjct: 1   MLLRTLREDPADAEVPSHRLLLRAGYIRRAAPGGYTWLPLGKLVLDRVTDVVRGEMTAIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + +    SY
Sbjct: 61  DQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRRGAEHLLAPTHEELAALLVKDLFTSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+ P T +Q+Q KFRDE RPR G++R REFLMKDAYSFDL   G   +Y +   +Y RIF
Sbjct: 121 RDFPVTLFQVQTKFRDEARPRAGLLRGREFLMKDAYSFDLDDAGLTAAYERHRAAYQRIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +LGL+   +RA SG +GG  S EF+     GE             
Sbjct: 181 DQLGLEYAVVRATSGAMGGSASEEFLAATQVGEDTFVGCTACDHAA 226



 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 4/180 (2%)

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  +         RGIEVGHIF  G +Y+   +    G  GK     MG YGIG  
Sbjct: 397 RPGDPCSACGVGTLTMRRGIEVGHIFQLGRRYTDAFTVDVLGPAGKPVRPTMGCYGIGVS 456

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R VAA+ E  HD +G++WP +VAP  + L+      Q   DA   +  RL+  G  V  D
Sbjct: 457 RAVAAIAEQHHDERGLVWPAAVAPCDVHLVAAGKGPQ--LDAALDLGTRLAAAGLRVLVD 514

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D      G +F  A+L+G P  V+VG + ++D  VE++ R TG R ++ +  +++     
Sbjct: 515 DRTHVSAGVKFTDAELIGLPRAVVVGRR-LADGYVELRDRATGERTELPVAGLVDRLRDE 573


>gi|169629982|ref|YP_001703631.1| threonyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|238688903|sp|B1MCK6|SYT_MYCA9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169241949|emb|CAM62977.1| Threonyl-tRNA synthetase [Mycobacterium abscessus]
          Length = 684

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/457 (15%), Positives = 136/457 (29%), Gaps = 52/457 (11%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E  R D      +L L +    +   G+  + P G      +    R +    G 
Sbjct: 251 LELLEEAQRRDHRKLGVELDLFS-FPDEIGSGLPVFHPKGGIVRKELEDYSRAKHTAAGY 309

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVM 114
             ++ P +   +L+  SG  D Y   M      +             +     P +  + 
Sbjct: 310 EFVNTPHITKENLYQTSGHLDWYSDGMFPPMHIDAELNEDGTVRKPGQNYYLKPMNCPMH 369

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHS 173
             I+R+  +SYR LP   ++    +R E      G+ R R     DA+ +  T E     
Sbjct: 370 HLIYRARGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-TTREQMHEE 428

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +    L +    GL    +   +        S E    A     QV         P 
Sbjct: 429 LTSLLRFVLDLLSDYGLDDFYLELSTKDEAKFVGSDEVWEEATKTLEQVALDSGLQLVPD 488

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P                       A      + +  D+L  + ++S   ++         
Sbjct: 489 PG--------------------GAAFYGPKISVQAKDALGRSWQMSTIQLDFNMPER--- 525

Query: 293 KYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                 +  +  ADG +   V +     G++     V+   + G    W   ++P +   
Sbjct: 526 -----FNLEYTAADGTRKQPVLIHRALFGSIERFFGVLTEHYAGAFPAW---LSPVQAVG 577

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I I             I ++L   G     D   +++  +         P  ++ G + V
Sbjct: 578 IPIA---DAHAPYLNDIVSQLKAQGIRAEVDSSDDRMNKKIVNHTNQRVPFLLLAGDRDV 634

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
               V  + R       +  +E +       +    V
Sbjct: 635 EAGAVSFRFRDRTQVNGVPRDEAVAAIVDWVNRRENV 671


>gi|42560810|ref|NP_975261.1| threonine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492306|emb|CAE76903.1| threonine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321098|gb|ADK69741.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 639

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 157/439 (35%), Gaps = 40/439 (9%)

Query: 17  DAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D     H+L+ +T    G       G+  WLP G    + +   +R+++     I +  P
Sbjct: 232 DRRSRDHRLINKTLNIFGFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETP 291

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + + +L+  SG +D YG++M +  +     D+  I  P +      +++   +SYR+LP
Sbjct: 292 PIGTVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLP 351

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +  ++ R E      G+ R R   + D++ F +  +  +  +   +     + +  
Sbjct: 352 LRICEHAIQHRFESSGSLTGLERVRGMKLTDSHIF-VRSDQIEDEFRSTYKLISEVLNTF 410

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            ++   +          +             + +      D    S      D+      
Sbjct: 411 NIQIDYLSLSLRDPNDKV-------------KFYKDDLMWDKAESSLEKVLIDLGLKYEK 457

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+  +    +      VS   ++    F    K+      T+   D K
Sbjct: 458 RIGDAAFYGPKLDIQIKT---AQNHEITVSTIQLD----FLMPNKF----DLTYIDKDQK 506

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                M   G IG      A +     G   + P  + P ++ +I I    +   +    
Sbjct: 507 LVRPIMIHRGLIGTYERFIATLLEQTKG---VLPLWLVPKQVEIIPI---SESNLEYANL 560

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I+ +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  + 
Sbjct: 561 IHQKLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSEKQI 620

Query: 428 DMSLEEVINYASHRFSNNR 446
            +S++E ++    +  + +
Sbjct: 621 TISIQEFVDMLKQQIKDKK 639


>gi|295109520|emb|CBL23473.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           obeum A2-162]
          Length = 653

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/451 (15%), Positives = 147/451 (32%), Gaps = 38/451 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L    E   +A+   H  + R   I        +G+   +P G   +  +   I 
Sbjct: 221 ASKDELKEHLEQMEEAKRRDHNKLGREMKIFTTVDVIGQGLPLIMPNGVIMMQELQRWIE 280

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTD 116
           +E+ + G +    P +  +DL+  SG +D Y   M  L D   + +     P        
Sbjct: 281 DEETKRGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEENDKEVFALRPMTCPFQYY 340

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++++   SYR+LP  + +    FR+E      G+ R R+F + + +   + P+     + 
Sbjct: 341 VYKAEQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQMVKEFK 399

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                       LG++                   +   D    + +  +  +       
Sbjct: 400 DCIALAQYCLQVLGVEEDVTY-------------HLSKWDPTNREKYIGEPEVWEETEGH 446

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                 +  LN    +     A      +    +   +   +     +            
Sbjct: 447 IRQM--LQELNIPFTEDVGEAAFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ------ 498

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   +G K     +    +G      A +   + G    W   + P ++ +I I
Sbjct: 499 --FDMYYIDENGDKKRPYIIHRTSMGCYERTLAWLIEKYAGMFPTW---LCPEQVRVIPI 553

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +      +K+ A++ + G     D   E++G +   A L   P  ++VG+K   + 
Sbjct: 554 ---SEKFNAYADKVEAQMKEAGIRCSVDRRSEKMGYKIREARLERVPYMLVVGAKEEEEG 610

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           KV ++ R  G      L + ++       N 
Sbjct: 611 KVSVRSRYLGDEGMKDLGDFMSAIKEEIKNK 641


>gi|257055522|ref|YP_003133354.1| threonyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256585394|gb|ACU96527.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [Saccharomonospora viridis DSM 43017]
          Length = 692

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 147/455 (32%), Gaps = 56/455 (12%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 258 YLEMLAEAERRDHRKLGAELDLFS-FPEEIGSGLPVFHPKGGVVRKVLEDYSRRRHEEAG 316

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEV 113
              ++ P +  A L+  SG    Y + M      +             +     P +  +
Sbjct: 317 YEFVNTPHITKAQLFETSGHLHWYREGMYPGMHLDAEYNDDGTVRKPGQDYFLKPMNCPM 376

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              I+RS  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +    
Sbjct: 377 HNLIYRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTVDQMHD 435

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    A         +       
Sbjct: 436 EIKSLLQFVLDLLRDYGLDDFYLELSTRDPEKSIGSDEDWERATDALRSAAEASGLDLVL 495

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A  +   + +  D++  + ++S   +++     FG
Sbjct: 496 DPG--------------------GAAFYAPKISVQAKDAIGRSWQMSTIQVDLMEPELFG 535

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            +Y        + +DG K   V +     G++     V+   + G    W   +AP ++ 
Sbjct: 536 LEY--------QASDGSKQQPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVV 584

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I I        +    +   L   G  V  D   +++  +         P  ++ G + 
Sbjct: 585 GIPIA---DAHVEHLRGVEKALRDRGIRVELDTSDDRMQKKIRTHTTQKVPFLLLAGGRD 641

Query: 411 VSDSKVEIKHRL----TGIREDMSLEEVINYASHR 441
           V    V  + R      G+    +++ V+++ + R
Sbjct: 642 VEAGAVSFRFRDGSQINGVPVATAVDAVVDWVTRR 676


>gi|256376220|ref|YP_003099880.1| threonyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255920523|gb|ACU36034.1| threonyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 682

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 133/452 (29%), Gaps = 54/452 (11%)

Query: 13  ENPRDAEIASHKLM-LRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +AE   H+ + +   +     +   G+  + P G      +    R      G   
Sbjct: 255 ELIAEAERRDHRKLGVELDLFSFPDEIGSGLAVFHPRGGIIRKAMEDYSRARHEAEGYEF 314

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +   +L+  SG  D Y   M                 R  +     P +      
Sbjct: 315 VYSPHITKGNLFETSGHLDWYRDGMYPAMHLDAELNEDGTIRRPGQDYYLKPMNCPFHDL 374

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP   ++    +R E      G+ R R     DA+ F  T +  +    
Sbjct: 375 IFRSRGRSYRELPLRMFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIF-CTLDQVQEELK 433

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    L +    GL    +   +        S E    A                P P 
Sbjct: 434 SLLAFVLGLLRDYGLDDFYLELSTRNDEKYVGSDELWETATETLRVAAEDSGLELVPDPG 493

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + +  D+L    ++S   ++    F    ++
Sbjct: 494 --------------------GAAFYGPKISVQAKDALGRTWQMSTIQLD----FNLPERF 529

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  + G DG +   V +     G++     V+   + G    W   +AP ++  I 
Sbjct: 530 ----ELEYTGPDGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIP 582

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I         A   +   L K G  V  D   +++  +         P  ++ G K V  
Sbjct: 583 IADEHADHLFA---VAKELKKHGVRVEIDASDDRMQKKIRNHTTQKVPFMLLAGGKDVES 639

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V  + R       + +E+ +       S  
Sbjct: 640 GAVSFRFRDGTQINGVPVEQAVATVVGWISRR 671


>gi|305432763|ref|ZP_07401922.1| threonine--tRNA ligase [Campylobacter coli JV20]
 gi|304444160|gb|EFM36814.1| threonine--tRNA ligase [Campylobacter coli JV20]
          Length = 610

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 152/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L I++E   RD      +L L T    +   G+  WL  G +    +  ++ +    
Sbjct: 203 KEHLRIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRL 261

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++
Sbjct: 262 RGYEPVRGPELLKADAWKISGHYANYKENMY-FTQIDEQEYGIKPMNCVGHIKIYQSDVR 320

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++     
Sbjct: 321 SYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVD 379

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          M   + P       E    A     +    +             +   
Sbjct: 380 NLMKLFDFSY-EMEISTKPAKAIGDDEIWDTATKALKEALDEQGLKYGIDEGGGAFYGPK 438

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSA 300
           I +                                  R  + G I      ++LP     
Sbjct: 439 IDIKITDA---------------------------LKRKWQCGTI---QVDFNLPERFKL 468

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +  ++  K   V +    +G+      ++     G+   +   +AP  + ++ I     
Sbjct: 469 EYTDSNNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFF---IAPTAVGIVPI---SD 522

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L ++  D    +  E +  +   A+    P+ +++G + V+   V ++
Sbjct: 523 SHIAYAKEIQRALLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDEEVAKRSVALR 582

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    ++++SL+E I     + S 
Sbjct: 583 DRRAKEQKNLSLDEFIKLVKEKMSE 607


>gi|115359784|ref|YP_776922.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ambifaria
           AMMD]
 gi|115285072|gb|ABI90588.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ambifaria
           AMMD]
          Length = 402

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 148/429 (34%), Gaps = 45/429 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L        S G   W P G      V   IR    +    E+  P + S
Sbjct: 5   DHRVLGNKLDLFHQ--QDESPGAIFWHPRGMVLYRVVEEYIRVRMRQAAFAEVRTPQIVS 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            DLW +SG ++ +G+ M  L   N+      P        IF+   +SYR+LP  + +  
Sbjct: 63  RDLWEQSGHWEKFGRNMFSLESDNN-PYCLKPMSCPCHVQIFKKGSRSYRDLPIRYSEFG 121

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+MR+R F   DA+   + P+  +    +  V    I+   G     +
Sbjct: 122 AVHRAEPSGALHGLMRARAFTQDDAHVLCM-PDQVEIEVARFCVLLKTIYADFGFGEFDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P            ++            +DF I +    F        + ++    
Sbjct: 181 ALSTRPAVRAGDDAVWDRSEAM-LASAARAAGLDFAIQAGEGAFYGPKLEFHLFDRQG-- 237

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYV 312
                                   R  + G I      + LP  + A +   DG K   V
Sbjct: 238 ------------------------RKWQCGTI---QLDFVLPERLGAAYVAEDGAKATPV 270

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++     ++   ++G    W   +AP +I + NI   D   R   +      
Sbjct: 271 MLHHAVLGSLERFIGILLEHYEGWLPTW---LAPDQIVVANIGKDD---RAFADNTAFAF 324

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +GC V  D   E++  +   A  L  P+  I G K     +V ++ R  G +  +++ 
Sbjct: 325 EDIGCRVLRDFRAERLPRKIFDARELAAPIVAIAGRKEALAGEVSLRLRD-GEQHVLTIN 383

Query: 433 EVINYASHR 441
           + + Y    
Sbjct: 384 DALAYLKQH 392


>gi|257869604|ref|ZP_05649257.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803768|gb|EEV32590.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 575

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/236 (41%), Positives = 147/236 (62%), Gaps = 1/236 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  ++REE
Sbjct: 9   MKQSKLFIPTLREIPSDAETLSHQLLVRAGYIRQVAAGIYMYLPLAQRVLEKIKKLMREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM++P L   +LW  +GR   YG+ + +L DRN++  + GPTHEE  T++ +S
Sbjct: 69  LAKIDAVEMTMPVLLPLELWQSTGRDGLYGRSLYQLTDRNEREYVLGPTHEEPFTELIKS 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +Y +   +
Sbjct: 129 EISSYKRLPISLYQIQSKYRDEQRPRFGLIRSREFIMQDGYSFHADESSLDTTYRRYEAA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           Y  I  R GL+   +  ++G +GG  S EF+ L+  GE ++ C     D+    + 
Sbjct: 189 YHAILQRCGLEYRAVIGDNGLMGGHDSKEFMALSQIGE-ELICYSTESDYVANWKM 243



 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 98/177 (55%), Gaps = 3/177 (1%)

Query: 265 EKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  D  P+ K      RGIEVGHIF  GTKYS  + AT    +G++  V MG YGIG  
Sbjct: 393 VQEGDPSPDGKGVLTFTRGIEVGHIFKLGTKYSERLGATVVDENGQETPVMMGCYGIGVS 452

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R+++ ++E   + +GI WP  +AP+ I +I     D      CE++   +  VG +V  D
Sbjct: 453 RLLSTIVEQHGNEEGIDWPKEIAPYDIHIIQTTMEDSYQTALCEEVEQAMLAVGYEVLVD 512

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D  E+ G +FA ADL+G P+++ +G+K  ++  VEIK + T    ++  EEV    +
Sbjct: 513 DRNERAGVKFADADLIGCPIRLTIGNK-ATEGIVEIKIKHTNATVEVRKEEVATTLT 568


>gi|256545377|ref|ZP_05472740.1| proline--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398938|gb|EEU12552.1| proline--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 565

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/232 (43%), Positives = 153/232 (65%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+++P+DAE  SHKL++R   I + S G+YS+LPLG K ++ +  I+R+   +  +I
Sbjct: 1   MPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMKVINKIENIVRKSMEKYDSI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T++ +  + SY+ 
Sbjct: 61  EVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREFCLGPTAEEQFTNLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG K SY KM+ +Y+ +F  
Sbjct: 121 LPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLKKSYQKMWDAYVEVFDA 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           L L    +  +SG +GG++SHEF+ LA+TGE ++F +++            F
Sbjct: 181 LDLDYKIVEGDSGAMGGNISHEFMALAETGEGEIFYTENSNYAATDESAKFF 232



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           + +  I +  TD   I +               +    +   D   + K   ARGIEVG+
Sbjct: 347 YKNMVIGANKTDHHYINANYKRDFNGEVCEDLLTAKEGDLSQD--GKEKLQLARGIEVGN 404

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           IF  GTKYS  + A F   +GK     MGSYGIG  R ++A+IE  +D  GIIWP  VAP
Sbjct: 405 IFQLGTKYSESLEAYFLDENGKQKPFIMGSYGIGITRSISAIIEQHYDENGIIWPTKVAP 464

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           F+  +  +  +++  ++  EKIY +L   G +V  DD  E+ G +F   DL+G P ++ V
Sbjct: 465 FEAWITLVNKNNEEQKEIAEKIYNKLLDAGIEVMLDDRKERAGVKFNDRDLVGVPYRITV 524

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G K   D  VE   R       M  +E I        ++
Sbjct: 525 G-KDAKDDMVEFSKRSDMENLKMPTDEAIEKIISSIKDD 562


>gi|317177054|dbj|BAJ54843.1| prolyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 577

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/231 (42%), Positives = 133/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 86/181 (47%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLHQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLKS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|240170657|ref|ZP_04749316.1| threonyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 697

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 144/451 (31%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 267 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 325

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  +   I
Sbjct: 326 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEHNADGSVRKPGQDYYLKPMNCPMHCLI 385

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F  T +  +     
Sbjct: 386 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFS-TRDQMRDELRS 444

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S E    A     +V         P P  
Sbjct: 445 LLRFILDLLGDYGLTDFYLELSTKDPDKFVGSDEVWEEATNVLAEVGAESGLDLVPDPG- 503

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L    ++S   ++          + 
Sbjct: 504 -------------------GAAFYGPKISVQVKDALGRTWQMSTIQLDF--------NFP 536

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG     V +     G++     ++   + G    W   +AP ++  I +
Sbjct: 537 ERFELDYTAADGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQVVGIPV 593

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++ A+L   G  V  D   +++  +         P  ++ G + V   
Sbjct: 594 A---DEHVPYLEEVAAQLKSYGVRVEVDGSDDRMAKKIVHHTNQKVPFMLLAGDRDVQAG 650

Query: 415 KVEI----KHRLTGIREDMSLEEVINYASHR 441
            V      + +L G+  D ++  ++ + + R
Sbjct: 651 AVSFRFGDRTQLNGVPRDAAVAAIVEWLATR 681


>gi|183982102|ref|YP_001850393.1| threonyl-tRNA synthetase ThrS [Mycobacterium marinum M]
 gi|238690929|sp|B2HM74|SYT_MYCMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|183175428|gb|ACC40538.1| threonyl-tRNA synthetase ThrS [Mycobacterium marinum M]
          Length = 691

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 143/451 (31%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 261 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 319

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  +   I
Sbjct: 320 NSPHITKAQLFHTSGHLDWYADGMFPPMQIDAEYNADGTVRKPGQDYYLKPMNCPMHCLI 379

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F  T E  +     
Sbjct: 380 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIF-CTREQMRDELRS 438

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S E    A     +V         P P  
Sbjct: 439 LLRFVLDLLSDYGLTDFYLELSTKDPDKFVGSDEVWEEATNVLAEVGAESGLELVPDPG- 497

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L    ++S   ++          + 
Sbjct: 498 -------------------GAAFYGPKISVQVKDALGRTWQMSTIQLDF--------NFP 530

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG     V +     G++     ++   + G    W   +AP +   I +
Sbjct: 531 ERFGLEYTAADGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQAVGIPV 587

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++ A+L   G  V  D   +++  +         P  ++ G + V   
Sbjct: 588 A---DEHVAYLEQVAAQLKSHGVRVEVDTSDDRMAKKIVHHTNQKVPFMLLAGDRDVQAD 644

Query: 415 KVEIK--HRL--TGIREDMSLEEVINYASHR 441
            V  +   R    G+  + ++  ++++ S R
Sbjct: 645 AVSFRFGDRTQINGVPREAAVAAIVDWISRR 675


>gi|330802268|ref|XP_003289141.1| hypothetical protein DICPUDRAFT_35169 [Dictyostelium purpureum]
 gi|325080808|gb|EGC34348.1| hypothetical protein DICPUDRAFT_35169 [Dictyostelium purpureum]
          Length = 679

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 162/448 (36%), Gaps = 45/448 (10%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++  + A +  H+L+ +       H  S G   +LP G K  + +   +R E  R G  E
Sbjct: 264 EDLSKKASLRDHRLIGKNQELFFFHPFSPGSCFFLPHGTKIYNKLLNFLRSEYRRRGYQE 323

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + S  LW +SG + +Y   M      +       P +      +F    +SY+ L
Sbjct: 324 VITPNIYSQKLWEQSGHWQNYKDNMFSFECDHTHYS-LKPMNCPGHCLMFAHRQRSYKEL 382

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P       +  R+E      G+ R R F   DA+ F  TP+  +    +       ++  
Sbjct: 383 PMRIADFGVLHRNESHGSLTGLTRVRRFQQDDAHIF-CTPDMIREEIAQCLDFMKFVYSV 441

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                  +   + P       E    A+   +QV        + I  ++  F        
Sbjct: 442 FNFTF-HLELSTRPDSFLGDIEVWDKAENALSQVLTEFCGNQWKINPKDGAFYG------ 494

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                           +  L D+  ++ + +   ++    F    +++L  +   K    
Sbjct: 495 -------------PKIDIHLKDANGKSHQCATIQLD----FQLPIRFNLEYNDGKKEETE 537

Query: 308 KDH-----YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                    V +     G++  + A++     GK   WP  ++P +  ++++    +   
Sbjct: 538 NQQSAVNRPVMIHRALFGSVERMMAILMEHTGGK---WPFWLSPRQCIVVSV---SKAFN 591

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           +   +I ++L++   D+  D       I  +   A  L +   +++G +      + ++ 
Sbjct: 592 NHALEIQSKLNQSMVDIDVDVDISDNLIAKKVFEATHLQYNYIIVIGQEESDSGILSVRE 651

Query: 421 RLTGIRED--MSLEEVINYASHRFSNNR 446
           R +  +E+  +S++++++       N +
Sbjct: 652 RDSKSKENRKLSIDDLLSEFKLNLKNFK 679


>gi|119025474|ref|YP_909319.1| prolyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|152112217|sp|A1A0K4|SYP_BIFAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118765058|dbj|BAF39237.1| prolyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
          Length = 605

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/232 (40%), Positives = 136/232 (58%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE  
Sbjct: 1   MSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
              A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  SIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +
Sbjct: 181 RIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEA 232



 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 4/233 (1%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           ++TG+   +     +           +  +    +V         T +    +  D  P+
Sbjct: 370 SETGDALRYLIDAHVARGSAWFTGADEQDVDYYDLVYGRDFEADGTVEAVQVRHGDMSPD 429

Query: 274 NKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+
Sbjct: 430 GSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAET 489

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            HD KG+ WP  +AP ++ ++     D    +A E++   L   G +V +DD  +   G 
Sbjct: 490 HHDEKGLAWPAVIAPAQVHVVA-TGKDAAAFEAAEQLIGELEAKGIEVIFDDRKKVSPGV 548

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F  A+L+G P+  + G   V++  +E++ R     E + + +     + R +
Sbjct: 549 KFKDAELIGVPIIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAAQAIADRVA 601


>gi|332844839|ref|XP_003314929.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           3 [Pan troglodytes]
          Length = 766

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 137/400 (34%), Gaps = 44/400 (11%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 391 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 450

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 451 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 509

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 510 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLRFLQSVYST 568

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 569 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 616

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 617 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 659

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 660 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 713

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
            ++ +   + G     D D    +  +   A L  +   +
Sbjct: 714 LQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFIL 753


>gi|322786154|gb|EFZ12760.1| hypothetical protein SINV_13030 [Solenopsis invicta]
          Length = 347

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 169/334 (50%), Gaps = 30/334 (8%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           LM+  G+I   S G+Y+ LPLG + L+ +  ++ +E    GA ++ +P L S  LW ++ 
Sbjct: 18  LMINYGIIKPVSIGMYALLPLGMRILNKLINLVDKEMTSIGAEKILLPALTSVALWKKTD 77

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDEL 143
           RYD    E+  L DR+ K  I  PTHEE + D+  S  + S ++LP   YQI  K+RDE+
Sbjct: 78  RYDCNKTELFTLMDRHKKEYILSPTHEEAICDLISSAGQFSAKSLPLKLYQISSKWRDEM 137

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           +PR G++RSREF+MKD Y+FD + + ++++YN +  SY  IF ++G++      + G IG
Sbjct: 138 KPRLGLLRSREFIMKDLYTFDTSLDNARYTYNLVCESYNNIFRKIGVEYTKSIGDMGTIG 197

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G +SHE+  +++ GE  +   +        S +                           
Sbjct: 198 GLMSHEYHYISNIGEDTILRCRLCHFSINQSIS--------------------------- 230

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            +       +N+       EVGH F   TKYS P+ A +   + K   + MGS+G+G  R
Sbjct: 231 -KTTSCPECKNELHQHTAAEVGHTFLLDTKYSQPLKALYV-EENKSKPMIMGSFGLGLSR 288

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           ++   +E       + WP  +AP+ I +I  K  
Sbjct: 289 IITLAVEILSTKNELRWPVKLAPYTICVIPPKVD 322


>gi|197301753|ref|ZP_03166823.1| hypothetical protein RUMLAC_00479 [Ruminococcus lactaris ATCC
           29176]
 gi|197299193|gb|EDY33723.1| hypothetical protein RUMLAC_00479 [Ruminococcus lactaris ATCC
           29176]
          Length = 655

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 157/451 (34%), Gaps = 41/451 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L    E   DA+   H  + R   +        +G+  + P G K +  +   I + 
Sbjct: 223 KEELNAYLEKLEDAKRRDHNKLGREMELFTTVDVIGQGLPLFPPKGTKMIMKLQRWIEDL 282

Query: 61  QNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDI 117
           +++  G +    P +  +DL+  SG +D Y + M  L D   + +     P        +
Sbjct: 283 EDKEWGYVRTRTPLMAKSDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYYV 342

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +++  KSYR+LP+   +    FR E      G+ R R+F + +A++  + P+ ++     
Sbjct: 343 YKNTQKSYRDLPYRMSETSTLFRSEDSGEMHGLTRVRQFTITEAHNV-IRPDQAEEELKN 401

Query: 177 MFVSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            F     +   LGL   +  R                  D    + +   +         
Sbjct: 402 CFDLAYYVLSTLGLQDDVTYRLSK--------------WDPANKKKYLGDEDYWNRTQEA 447

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             +      +  +     A  A      + +  +   +   +    ++           +
Sbjct: 448 LREVLREKGVPFVEADGEA--AFYGPKIDIQAKNVYGKEDTMITIQLDCA--------IA 497

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   +G K     +    +G      A +   + GK   W   + P ++ ++ I
Sbjct: 498 ENFDLYYIDQNGDKVRPYIIHRTSMGCYERTLAWLIEKYAGKFPTW---LCPEQVRVLPI 554

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   +   K+ A L K   DV  D+  E+IG +   A L   P  ++VG +  +D 
Sbjct: 555 ---SEKYEEYANKVCAELKKNDIDVTVDNRSEKIGFKIREARLDKLPYMLVVGQQEEADG 611

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R  G     SL+E I+         
Sbjct: 612 TVSVRSRFAGNEGTKSLDEFIDAICKEIRTK 642


>gi|147835149|emb|CAN65674.1| hypothetical protein VITISV_002009 [Vitis vinifera]
          Length = 1260

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 127/417 (30%), Gaps = 55/417 (13%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G      +    ++  
Sbjct: 267 QLKAYLHFKEEAKRRDHRRLGQDLDLFS-IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIH 325

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                  +  P +  ADLW  SG  D Y + M       D+     P +      I++  
Sbjct: 326 IEHXYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRK 385

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+ P    ++   +  EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 386 LHSYRDFPIRVAELGTVYXYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 444

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  + G     +   + P     + +    A +        K +             
Sbjct: 445 TEEILLQFGFSKYEVNLSTRPEKAVGADDIWEKATSALRDALDDKGW------------- 491

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                                   ++   +    K        +G  +   T  +     
Sbjct: 492 --------------------SYRIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQAK---- 527

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                  K   + +    +G++     V+   + G   +W   ++P +  ++ +      
Sbjct: 528 -------KQRPIMIHRAVLGSLERFFGVLIEHYAGDFPLW---LSPIQARVLPVT---DT 574

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             + C ++  +L   G        GE++      ++    PL  +VG K V    V 
Sbjct: 575 QLEYCNEVTNKLKANGIRAEV-CHGERLPKLIRNSEKQRIPLMAVVGPKEVETQTVT 630


>gi|317010519|gb|ADU84266.1| prolyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 577

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 134/231 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQIGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDEEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I + LGL    + A+SG IGG+ S EF+VL + GE  +   K+     
Sbjct: 181 YKEILNDLGLDFRIVEADSGAIGGNKSKEFVVLTECGEDTIVVCKNCDYAA 231



 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 86/181 (47%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDCCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G DV  DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDVLLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESREFECIKRANLEKQTLKDTELEEKILEILES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|227504970|ref|ZP_03935019.1| threonyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198420|gb|EEI78468.1| threonyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 687

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 149/461 (32%), Gaps = 54/461 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L   Q    +AE   H+ + +         +   G   + P G      +    R 
Sbjct: 248 SKEALEAYQHMIAEAEKRDHRRLGQELDLFSFPDEIGSGFPVFHPNGAVVRMEMEEHSRR 307

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYG 107
              + G   +S P L   DL+ +SG  D Y   M          D +       +     
Sbjct: 308 RHIQDGYSFVSTPHLTKGDLFKKSGHLDFYADGMFPPMQLDGEYDEDGNCTKQPQDYYAK 367

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   D++ +  T
Sbjct: 368 PMNCPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDSHIY-CT 426

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSK 225
           PE  +    K+    + +    GL    +   +  P     S E    + +    V    
Sbjct: 427 PEQLEDELTKVLDFIISLLKDYGLDDFYLELSTKDPNKYVGSDEIWERSTSILQSVAEKS 486

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                P P+                      A      + +  D++    ++S   ++  
Sbjct: 487 GLELVPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD-- 524

Query: 286 HIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
             F    ++       +  +DG K   + +     G++     V+   + G    W   +
Sbjct: 525 --FNLPERF----ELEYTASDGTKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP ++  I +        +A   I A+L K G     D   +++  +         P  +
Sbjct: 576 APHQVVGIPVADEFSPHLEA---IAAKLRKRGIRADVDTSDDRMQKKIRNHTTGKVPFML 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + G + V  + V  +         + ++E I   +   +  
Sbjct: 633 LAGERDVDANAVSFRFLDGSQVNGVPVDEAIELIAAWVAER 673


>gi|229083697|ref|ZP_04216020.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
 gi|228699626|gb|EEL52288.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
          Length = 476

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 158/448 (35%), Gaps = 77/448 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENIQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             +G   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 61  KASGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCVRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E +     +R+ EFL ++ ++   T         +
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETA----EESQE 175

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++ L ++                                    FC        I  + 
Sbjct: 176 ETLNILNLY----------------------------------ASFCEDYLAIPVIKGQK 201

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           TD +      +     +                          + ++ G    FGT +S 
Sbjct: 202 TDKEKFAGAKATYTIESL---------------------MHDGKALQTGTSHNFGTNFSE 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 241 AFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVIIVPIAQ 299

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +    +  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 300 HKEGVLEKAAGLQERIQKV-ARVKIDASNKTPGWKFNEYEMKGVPIRLEVGPKDIEKNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  R T  +E +S++++    +   + 
Sbjct: 359 VLVRRDTKEKEFVSMDQLEERITSLLNE 386


>gi|50306435|ref|XP_453191.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642325|emb|CAH00287.1| KLLA0D02772p [Kluyveromyces lactis]
          Length = 461

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 151/431 (35%), Gaps = 43/431 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
             S G   +LP G K  + + + ++ ++QN+ G  E+  P +    LW +SG +++Y  +
Sbjct: 56  PISPGSIFFLPNGTKIFNKLVSFMKLQQQNKYGFQEVVTPLIYRKTLWEQSGHWENYKDD 115

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           M R+   D + +     P +      +F+   +SY  LP  F       R+E      G+
Sbjct: 116 MFRVEGNDVSKEEYGLKPMNCPGHCVVFKRFDRSYNELPLRFSDFSPLHRNEASGALSGL 175

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F   D + F  TP+  +    K        + ++            PI GD    
Sbjct: 176 TRVRKFHQDDGHIF-CTPDQVRQEIQKCLELVDMCYTKVF-----------PISGDSKQA 223

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              L  +   + +     +         D   + S            A      +  + D
Sbjct: 224 AYSLTLSTRPEKYVGDIEVWDHAEDVLKD--TLQSWGQPWTTNEGDGAFYGPKIDILVND 281

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAV 328
              ++ +V+   ++    F    ++       FK  D      + +     G++    A+
Sbjct: 282 HTGKSHQVATIQLD----FQLPERF----DLQFKDKDNSYKRPIMIHRAVFGSVERFMAI 333

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS-------------KV 375
           +  S  GK   WP  + P +  +I +K  D+   +   K    L                
Sbjct: 334 LIDSSKGK---WPFWLNPNQCMVIPVKTEDEKIMELAFKTVNSLRGENSDPKSPIPLNSF 390

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  D   E +  +   A    +   +++G K V   KV I+ R +   + +++++V 
Sbjct: 391 HFSVDMDARDESVSKRIREAIKKHYSYIIMIGDKEVEAGKVAIRTRESKKVDLLTIDDVF 450

Query: 436 NYASHRFSNNR 446
                   N +
Sbjct: 451 ERFVDLEKNYK 461


>gi|50364993|ref|YP_053418.1| threonyl-tRNA synthetase [Mesoplasma florum L1]
 gi|50363549|gb|AAT75534.1| threonyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 644

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 163/445 (36%), Gaps = 41/445 (9%)

Query: 12  QENPRDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +E   D     H+++ +T    G  H    G+  W+P G    + +   ++E++     I
Sbjct: 231 KEILEDRRSRDHRIINKTLKIFGFDHLVGPGLPLWMPNGTIVKEEIKKYLKEKEWEYDYI 290

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKS 124
            ++ P + + +L+ +SG +D YG++M +  +     D+  I  P +      +++   +S
Sbjct: 291 NVTTPVIGTVELYKKSGHWDHYGEDMFQPFNGGSGSDEQFILRPMNCPHHVAVYKQEQRS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +  L+ R E      G+ R R   + D++ F + P+  +  +  ++     
Sbjct: 351 YRDLPLRIAEHALQHRYESSGSLTGLERVRAMELTDSHIF-VRPDQVEAEFKSIYKLITE 409

Query: 184 IFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +     ++   +      P      ++   + D  E  +       +  +   N D+   
Sbjct: 410 VLETFNIQIDYLSLSLRDPEDKVKYYQDDKMWDEAEAAL-------EKVLQDLNIDYKKC 462

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I   +           T+  H             VS   ++    F    K+      T+
Sbjct: 463 IGEAAFYGPKLDIQIKTAQNHEI----------TVSTIQLD----FLLPKKF----DVTY 504

Query: 303 KGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +    + +    IG      A +     G   + P  +AP +I +I +    +  
Sbjct: 505 IDQNQEFKAPIMIHRGLIGTYERFIATLLEQTKG---VLPLWLAPNQIEIIPV--GSEEN 559

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  +L K       D   E++  +   A     P Q+++G +   D+ V  +  
Sbjct: 560 IEYANEVKKQLKKDFIRTHVDLRDERLSYKIRDAQTSKIPYQLVLGDQERKDNSVTYRQY 619

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +  + L E  N  +    N +
Sbjct: 620 GSEQQTTIKLNEFKNMITDLICNKK 644


>gi|291548182|emb|CBL21290.1| prolyl-tRNA synthetase, family I [Ruminococcus sp. SR1/5]
          Length = 479

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 145/411 (35%), Gaps = 66/411 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  +  P G    +N+   +      TG   + +P      L   E    + +  E+  
Sbjct: 38  KGCMAIKPAGYAIWENIQHELDRRFKETGVENVYMPIFIPESLLDKEKDHVEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D   + +   PT E +  D ++  I+S+R+LP  + Q     R E +     +R
Sbjct: 98  VTHGGLDPLQERLCVRPTSETLFCDFYQKEIQSHRDLPKVYNQWCSVVRWE-KTTRPFLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E ++    +M    L I+                          
Sbjct: 157 SREFLWQEGHTAHATAEEAEQRTIQM----LNIYAD------------------------ 188

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     FC +      I  + TD +      +     +                  
Sbjct: 189 ----------FCEEVLAIPVIKGQKTDKEKFAGAEATYTIESL----------------- 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G    FG  ++      +   D    YV   S+G+   R++ A+I  
Sbjct: 222 ----MHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGMT-TRMIGAIIMV 276

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  +AP +  +I I+   +   +  +++ A L   G     D   +  G +
Sbjct: 277 HGDNSGLVLPPRIAPVQTVIIPIQQRKEGVMEKADELLAALKAAGIRAKVDATDKSPGFK 336

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FA  ++ G PL+V  G K + + +  +  R T  +  +S EE+ +      
Sbjct: 337 FAEQEMRGIPLRVECGPKDIENGQAVLCRRDTREKYTVSFEELADKVKELL 387


>gi|73919796|sp|Q5UX65|SYT_HALMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 151/440 (34%), Gaps = 45/440 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQH----SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E  R AE   H+ + +   +         G+  + P G+K L+ ++  +       G  E
Sbjct: 233 EQRRKAEERDHRKIGQEMDLFSIDETTGPGLPLYEPNGKKILNELSDYVAGLNRDAGYDE 292

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   +LW +SG Y++Y  +M  L D ND+     P +      IF  +  SYR+L
Sbjct: 293 VETPHVFRTELWKKSGHYENYVDDMF-LLDVNDEEYGLKPMNCPGHATIFEQNSWSYRDL 351

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +++    +R E R    G+ R+  F + D + F + P+  +          L     
Sbjct: 352 PVRYFEDGKVYRKEQRGELSGLSRTWAFTIDDGHLF-VRPDQIEEEVLATVDIILDTLDT 410

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             L    ++  + P       E    A++    V   +D        +            
Sbjct: 411 FNLDY-TVQFATRPEKSVGGDEIWEKAESQLESVLEEQDIDYVVEEGDG----------- 458

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      +    D+L  +       ++                 ++ G D 
Sbjct: 459 ---------AFYGPKIDFAFEDALGRHWDGPTVQLDFNMPER--------FDLSYTGEDN 501

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           ++H  V +     G+      V+   ++GK    P  +AP +I L+ +   +      CE
Sbjct: 502 EEHRPVMIHRALYGSYERFFMVLTEHYNGKF---PPWLAPEQIRLLPVSDDNIT---YCE 555

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I   L      V  +D    +G +   A     P   ++G        + ++ R     
Sbjct: 556 EIQDELDD--FRVTIEDRSWTVGKKIQQAHDDRVPYMCVIGDNEEEAGTISVRDRKEREE 613

Query: 427 EDMSLEEVINYASHRFSNNR 446
           +D+ + E  ++        R
Sbjct: 614 KDIDIAEFRDHLETEVEQQR 633


>gi|254391301|ref|ZP_05006505.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326440214|ref|ZP_08214948.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197704992|gb|EDY50804.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 658

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 144/450 (32%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L    E   +AE   H+ +     +     +   G+  + P G      +    R+
Sbjct: 241 TKDELKQYLEFLAEAEKRDHRRLGSELDLFSVPDEIGSGLAVFHPRGGIVRRVMEDYSRK 300

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+ +SG  D Y + M               P +  +   IF
Sbjct: 301 RHEEEGYEFVYTPHATKGTLFEKSGHLDWYAEGMYPPMQLDGGTDYYLKPMNCPMHNLIF 360

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      ++ 
Sbjct: 361 DARGRSYRELPLRLFEFGTVYRHEKSGVVHGLTRARGFTQDDAHIY-CTREQMAEELDRT 419

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     +V   +     P P   
Sbjct: 420 LTFVLNLLRDYGLTDFYLELSTKDPEKYVGSDETWEEATEVLRRVAEKQGLPLTPDPG-- 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    +++L
Sbjct: 478 ------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNLPERFNL 515

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG +   V +     G++    AV+   + G     P  +AP +   I I 
Sbjct: 516 ----EYTAPDGSRQRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPIG 568

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  +   A   K G  V  D   +++  +      L  P  +IVG + ++   
Sbjct: 569 ---DAHIEYLQSFAAEAKKRGLRVDVDASSDRMQKKIRNHQKLKVPFMIIVGDEDMNAGT 625

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       +  +  +       ++ 
Sbjct: 626 VSFRYRDGSQENGIPRDAALAKLEQVVADR 655


>gi|302922168|ref|XP_003053410.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734351|gb|EEU47697.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 741

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/459 (15%), Positives = 149/459 (32%), Gaps = 42/459 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L   +    +A   +H+ +    +     + S G   +LP G +  + +  +++ E 
Sbjct: 303 KKQLEEYKHFLAEAAKRNHRKIGQDQKLFFFDEVSPGSTFFLPHGVRIYNALMDLLKGEY 362

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P +  +DLW  SG +  Y + M    D   +     P +      IF   
Sbjct: 363 RKRGFTEVMSPNVYKSDLWKISGHWGHYEENMFTF-DVEKERYGLKPMNCPGHCKIFAHS 421

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY++LP+      +  R+E      G+ R R F   DA+ F  T +  +      F  
Sbjct: 422 DVSYKDLPWRMADFGVLHRNEFSGALSGLTRVRRFQQDDAHIF-CTVDQIRDEIESAFDF 480

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G     ++  + P           +A+    +   S                
Sbjct: 481 LSAVYGLFGFSF-KLKLSTRPEKYVGDIATWDIAEQKLQEALES---------------- 523

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY------ 294
                N+  E      A      +  L+D+L  + +     ++      F  +Y      
Sbjct: 524 FAKKTNAKWEFNPGDGAFYGPKIDITLYDALRRDHQCGTIQLDFNLPRRFKLRYVAGKDE 583

Query: 295 ---SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
              S     +     G    V +    +G+   +  V+     GK   WP  ++P +I +
Sbjct: 584 SGVSDGSDPSEDLPAGYSRPVMIHRAVLGSFERMFGVLAEHFAGK---WPFWLSPRQILV 640

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +        D  ++I     +    +  D        +     L  +    +VG++  
Sbjct: 641 VPVMP---AVNDYAKEIQQIFQEKELYIDVDLSSNTFQKKIRTGQLEQYNFIFVVGAEEA 697

Query: 412 SDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
               V I++R     +     + ++E +          R
Sbjct: 698 KSRTVNIRNRDDQATQTKGELVPIDEALESLVKLKVERR 736


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040681|gb|ACT57477.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 157/448 (35%), Gaps = 43/448 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD    + ++ L    I +   G+  W   G K    + + +R +  
Sbjct: 231 LTQYLYFLEESEKRDHRKLAREMDLF--HIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDI 117
                E++ P +    LW +SG +DSY   M  +   +D     +     P +      +
Sbjct: 289 D-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAV 347

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   +KSYR LP    +    +R+E      G+MR R F   DA+ F  T E   +   K
Sbjct: 348 FNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF-CTKEQMFNECLK 406

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    + I+   G + I ++  + P     S      A+     V               
Sbjct: 407 IHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVL-------------- 452

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            D     S + I         A      E +       K    R  + G I      ++L
Sbjct: 453 -DTIKNSSQDRINTGVLLGEGAFYGPKFEYIL------KDAIGRDWQCGTI---QVDFNL 502

Query: 297 P--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P   +A +  +  +  H V +     G++     ++  +  G   +W   ++P +  +  
Sbjct: 503 PSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLW---LSPIQAIVTT 559

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I +      +  ++I   L      +  D   E I  +     +   P+ +I G K  S+
Sbjct: 560 ITSS---AVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASE 616

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             + I+   +   + +SL + I   +  
Sbjct: 617 RSIGIRRFGSTTTQKVSLLDAIPILTKE 644


>gi|15674109|ref|NP_268284.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|81856528|sp|Q9CDT4|SYP_LACLA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12725184|gb|AAK06225.1|AE006441_3 prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
          Length = 616

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 101/215 (46%), Positives = 144/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEIN 603

Query: 431 LEEVINYAS 439
            +E++N   
Sbjct: 604 KDELVNTIE 612


>gi|281492788|ref|YP_003354768.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|281376440|gb|ADA65926.1| Prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
          Length = 616

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 101/215 (46%), Positives = 144/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEIN 603

Query: 431 LEEVINYAS 439
            +E++N   
Sbjct: 604 KDELVNTIE 612


>gi|326407711|gb|ADZ64782.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 616

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 101/215 (46%), Positives = 144/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEIN 603

Query: 431 LEEVINYAS 439
            +E++N   
Sbjct: 604 KDELVNTIE 612


>gi|300711550|ref|YP_003737364.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299125233|gb|ADJ15572.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 640

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 152/447 (34%), Gaps = 43/447 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++     Q   RD      ++ L +  +  HS G   + P G      +   IR + +
Sbjct: 227 LEEFLDRREQAKERDHRKIGREMDLFS--VPDHSPGCPHYHPNGMTIRRELEEYIRTQND 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKE-MLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
             G  E+  P L   +LW ESG  D +G E    L + N+      P +      I+   
Sbjct: 285 ALGYEEVRTPELNKKELWEESGHLDFFGSEGEFFLWEENETEYGLKPMNCANHAYIYDQQ 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP  F +    +R+E      G++R R     D ++F +  +  +    +    
Sbjct: 345 VRSYRDLPVRFSEFGNVYRNEQSGELSGLLRVRGMTQDDGHAF-IRRDQIQTEITETLRV 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+ +   + +  + E+       S E    A         ++         E + + 
Sbjct: 404 IEEIYEQFDFE-VLYKLETKGDHAVGSDEVWAEATEALRNALEAEGLEYDVEEGEASFYG 462

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I L++                           +    R   +G +          +  
Sbjct: 463 PKIGLDA---------------------------RDTLGREWTIGTV-QLDFNIPERLDL 494

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ G D ++H   M     +G+      V+    +GK   W   +AP ++ ++ I   + 
Sbjct: 495 SYTGEDNEEHRPVMVHRALLGSFERFMGVMIEHFNGKFPTW---LAPEQVRILPISDDN- 550

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E+I   LS     V  +D    IG +   A     P  +IVG    +   + ++
Sbjct: 551 --VAYAEEIREVLSD--FRVGIEDRSWTIGKKIQTAHDDRVPYMLIVGGNEEAAGTISVR 606

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R    R D+S EE            R
Sbjct: 607 DRFERERGDVSPEEFRTALETEVEEKR 633


>gi|226293450|gb|EEH48870.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 738

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 159/460 (34%), Gaps = 32/460 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K ++ + +++R
Sbjct: 291 KQMQEHLKFLEE----AEKRNHLRIGKEQDLFFFDEVSPGCPFLLPNGTKIINALQSLLR 346

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 347 AEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMF 405

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +      + +
Sbjct: 406 GHRERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQIMQEIDGL 464

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     ++   G     ++  + P       E    A+             D+ +   + 
Sbjct: 465 FDFLRSVYGLFGFSF-KLKLSTRPEKYMGKLETWNYAEEQLRAALTKFKGNDWEVDEGDG 523

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F       +I +     +         +L   +P N ++     E G       K +  
Sbjct: 524 AFYGPKIDITIQDALKREFQCA----TIQLDYQMPVNFKLEYMTGETGAKAKPADKTTED 579

Query: 298 M---SATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                A    ++    G+   V +    IG+      +I     GK   WP  ++P +I 
Sbjct: 580 AANPDAPSTSSNEPGPGRARPVVIHRAIIGSFERFLGIIIEHFGGK---WPFWLSPRQIL 636

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +        D  E++   L     +V  D  G  +  +     +  +    +VG++ 
Sbjct: 637 IVPVMP---AVNDYVEELREILRGDKLNVDIDISGNTMQKKIRSGQIAQYNFIFVVGAQE 693

Query: 411 VSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
            +   V I++R     +     + LEE            R
Sbjct: 694 KATRTVNIRNRDDPSSQVKGSLVPLEEARVKLRALRKERR 733


>gi|77360564|ref|YP_340139.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875475|emb|CAI86696.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 544

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 102/195 (52%), Positives = 132/195 (67%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI + + G+Y+WLP G + L  V  I+REE N+  AIEM +P +Q ADLW ESGR+D +G
Sbjct: 1   MIRRVASGLYTWLPTGLRVLRKVENIVREEMNKANAIEMLMPVIQPADLWEESGRWDEFG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            E++R  DR+++    GPTHEEV+TD  R  I SY+ LP + YQIQ K RDE RPRFGVM
Sbjct: 61  PELMRFTDRHNRTFALGPTHEEVITDFVRKEISSYKQLPISLYQIQTKVRDERRPRFGVM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REF MKDAYSF L+ E    +Y  M  +Y  IF RL L   P+ A++G IGG +SHEF
Sbjct: 121 RAREFTMKDAYSFHLSDECLDATYQVMHKAYCNIFERLNLDYRPVIADTGSIGGSVSHEF 180

Query: 211 IVLADTGETQVFCSK 225
            VLA++GE  +  S 
Sbjct: 181 HVLAESGEDAIAFSD 195



 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D    + I           +D+ N    D+ P  +      RGIEVGHIF  GTKYS  M
Sbjct: 338 DDEHYSGINWDRDVTDYEVADIRNIVEGDASPCGQGTLQIKRGIEVGHIFQLGTKYSQAM 397

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            A      GK+  + MG YGIG  R+VAA IE ++D  GIIWP  +APF ++++ +  H 
Sbjct: 398 KAGVLNESGKNQIMTMGCYGIGVSRIVAAAIEQNNDQYGIIWPQPIAPFDLAIVPMNMHK 457

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    +Y  L   G DV +DD  E+ G  F   +L+G P  +++G + + ++KVE
Sbjct: 458 SHRIPDIATNLYQGLKDAGLDVLFDDRKERPGVMFNDMELIGVPFTLVIGERNLDENKVE 517

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +K+R TG +  + ++  I+       
Sbjct: 518 LKNRRTGEKLMIDIDTAIDAIKAAVK 543


>gi|226306102|ref|YP_002766062.1| prolyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|259511615|sp|C0ZY88|SYP_RHOE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226185219|dbj|BAH33323.1| prolyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 581

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 174/385 (45%), Gaps = 26/385 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   D +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRDPYEASNRWTEYGPNLFRLKDRKGNDYMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLTESYQAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFD 240
            +IF RLG+K + + A SG +GG  S EF+  ++ GE       +      + +  T   
Sbjct: 184 EKIFTRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTVVP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D I  + + E      A T  +     + +          G ++G               
Sbjct: 244 DSIPFDGLPEAKVYDTANTPTIDTLVDWAN----------GADLGR-------------- 279

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-ISLINIKAHDQ 359
           T   AD   + +       G   ++   I    +        S+ P + + +      + 
Sbjct: 280 TITAADTLKNIMVKTRLPGGEWELLGIGIPGDREVDEKRLEASLEPAEFVMITETDFKNN 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDM 384
                       L   G     D  
Sbjct: 340 PFLAKGYIGPKALQANGVRYLVDPR 364



 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           SARGIE+GH+F  G KY+   +      +GK     MGSYG+G  R+VA + E  HD KG
Sbjct: 417 SARGIEIGHVFQLGRKYTDVFTVDVLAENGKPVRPTMGSYGVGVSRLVAVIAEQHHDEKG 476

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP  V+P  + L+ I   D+  R+  E + A+L + G +V  DD     G +F  ++L
Sbjct: 477 LRWPAEVSPADVYLV-IANKDETAREGAEGLAAQLDRAGLEVILDDRKASPGVKFKDSEL 535

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G PL V+VG +  +D KVEI+ R TG   ++  +  I   
Sbjct: 536 IGVPLIVVVG-RGWADGKVEIRDRFTGESREIDADSAIEAI 575


>gi|322819645|gb|EFZ26679.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 88/533 (16%), Positives = 160/533 (30%), Gaps = 104/533 (19%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  L   +    +A    H+ + R       H+ S G   WLP G +  + +    R++ 
Sbjct: 286 QTMLTEWKALQAEAARRDHRNIGRQQQLFGFHEVSPGSAFWLPHGARIYNALVEFQRKQY 345

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G  E+  P + S+ LW+ SG +D Y   M R+     +     P +      ++   
Sbjct: 346 RRRGFEEVVSPNMFSSKLWMVSGHWDKYADNMFRIVVEK-EDHGMKPMNCPGHCIMYAMQ 404

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  +    +  R+EL     G+ R R F   DA+ F    +  +       V 
Sbjct: 405 QHSYKELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CRMDQVQEEIRGALVF 463

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP------- 233
              ++  LG K     A + P     + E    A+        S   +   +P       
Sbjct: 464 LDDVYRTLGFKFFLKHA-TRPENKLGTEEMWDQAEAYLRAALNSFCGIPEHLPDPFKEGT 522

Query: 234 ---------------------------------SENTDFDDIISLNSIVEQWTAPYAATS 260
                                             E  D     +     E+ T   A   
Sbjct: 523 TFTFDGRRDSVKKLRALLKKQAANRENKDTDKKEEKDDEWKGPTHAEAWEENTGDGAFYG 582

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--------------- 305
              +  + D+L    + +   ++      FG KY+LP S    GA               
Sbjct: 583 PKIDIVVEDALRRRHQCATVQLDFNLPQRFGLKYTLPTSTVEGGAGAEAREHHTDPNAPN 642

Query: 306 --------DGKD----------------------------HYVQMGSYGIGAMRVVAAVI 329
                   +GK                               V +     G++    A++
Sbjct: 643 VGTDATTTEGKPEAEDECLSSYEKAARELCIDRRLDANQARPVMIHRAIFGSLERCIAIL 702

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              + G+   WP  ++P ++ +I + A +        K+       G     D     + 
Sbjct: 703 CEHYGGE---WPLWLSPRQVIVIPVSAENTT---YATKVRDAFYADGFHADVDSGNATLD 756

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +   A++  +    +VG        V ++ R        SL +V  +     
Sbjct: 757 KKIRNAEVARYNFIFVVGQVEEETQTVNVRTRDNRRHGTKSLADVQRWLRELV 809


>gi|225684056|gb|EEH22340.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 738

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 159/460 (34%), Gaps = 32/460 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K ++ + +++R
Sbjct: 291 KQMQEHLKFLEE----AEKRNHLRIGKEQDLFFFDEVSPGCPFLLPNGTKIINALQSLLR 346

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 347 AEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMF 405

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +      + +
Sbjct: 406 GHRERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQIMQEIDGL 464

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     ++   G     ++  + P       E    A+             D+ +   + 
Sbjct: 465 FDFLRSVYGLFGFSF-KLKLSTRPEKYMGKLETWNYAEEQLRAALTKFKGNDWEVDEGDG 523

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F       +I +     +         +L   +P N ++     E G       K +  
Sbjct: 524 AFYGPKIDITIQDALKREFQCA----TIQLDYQMPVNFKLEYMTGETGAKAKPADKTTED 579

Query: 298 M---SATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                A    ++    G+   V +    IG+      +I     GK   WP  ++P +I 
Sbjct: 580 AANPDAPSTSSNEPGPGRARPVVIHRAIIGSFERFLGIIIEHFGGK---WPFWLSPRQIL 636

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +        D  E++   L     +V  D  G  +  +     +  +    +VG++ 
Sbjct: 637 IVPVMP---AVNDYVEELREILRGDKLNVDIDISGNTMQKKIRSGQIAQYNFIFVVGAQE 693

Query: 411 VSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
            +   V I++R     +     + LEE            R
Sbjct: 694 KATRTVNIRNRDDPSSQVKGSLVPLEEARVKLRALRKERR 733


>gi|146100812|ref|XP_001468953.1| threonyl-tRNA synthetase [Leishmania infantum]
 gi|134073322|emb|CAM72048.1| putative threonyl-tRNA synthetase [Leishmania infantum JPCM5]
          Length = 788

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/518 (15%), Positives = 156/518 (30%), Gaps = 94/518 (18%)

Query: 9   PILQENP---RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           P+L E      +A    H+++ R       H+ S G   WLP G +  + +   +R++  
Sbjct: 272 PMLTEWKTIQEEAAKRDHRVIGRQQNLFNFHEVSPGSAFWLPHGARIYNTLVEFLRKKYR 331

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P + S+ LW+ SG ++ Y   M        +     P +      +F S  
Sbjct: 332 RCGFQEVISPNMYSSKLWMVSGHWEKYADNMFCTKCEK-EDFGLKPMNCPGHCIMFASQP 390

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+ LP  +    +  R+EL     G+ R R F   DA+ F    + +     +M    
Sbjct: 391 HSYKELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQM-QFL 449

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++  LG K       + P     S      +++           +   +P        
Sbjct: 450 SDVYGVLGFKFYFYH-STRPANKLGSEALWDQSESYLRTALNRFCGIPEELPDPLHPDQR 508

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKL-------------------------------FDS 270
                                  E                                  D+
Sbjct: 509 FHYDGKPDSVKKMKALMKKAERCEDPNAWKGPTNGGDGWIENAGDGAFYGPKIDIVVEDA 568

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--------------------------------- 297
           L    + +   ++      FG KY+LP                                 
Sbjct: 569 LRRRHQCATIQLDFNLPSRFGLKYTLPAAEKDETTVSPTEKQKHADPALTASSPAVEDCV 628

Query: 298 -------MSATFKG-------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                    A  +           +   V +    +G++    A++     G    WP  
Sbjct: 629 SKPKPGTYEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAILCEHFGGD---WPFW 685

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           ++P ++ ++ + A +    +  +++   +   G     D+    +  +   A+   +   
Sbjct: 686 LSPRQVMVVPVSASN---YEYSQQVRDTMHDAGFHADVDNGAATLDKKIRNAEKARYNFI 742

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++VG K    + V I+ R      + SL E + +    
Sbjct: 743 LVVGQKEQDATAVNIRARGEKRLGNKSLVEAVQWLKEL 780


>gi|220919170|ref|YP_002494474.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254782880|sp|B8J9M0|SYP_ANAD2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219957024|gb|ACL67408.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 574

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 105/230 (45%), Positives = 139/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  V AI+REE 
Sbjct: 5   RYSQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLAKVEAIVREEM 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +P L  A++W ESGR+D  G  M RL DR       G THEE+ T + R  
Sbjct: 65  DAIGGQEFYLPALHPAEIWKESGRWDVMGDNMFRLKDRKGGDYCLGMTHEEIFTAVARDE 124

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +Y
Sbjct: 125 LRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDRSYEDQRRAY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +IF R GL  + ++A SG +GG  S EF+V  D GE  V          
Sbjct: 185 EKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTDAGEDLVAACPRCRYAA 234



 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +      + +E+GHIF  GTKYS  M AT   A+GK   + MGSYGIG  R++AA
Sbjct: 397 GCPRCDGTLDVFKALEIGHIFKLGTKYSESMKATVLDAEGKQVPIVMGSYGIGVERILAA 456

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            IE  HD  GI++P ++APF  +++ +    +  R A E++ A L K G +V +DD  E+
Sbjct: 457 AIELHHDDNGIVFPMAIAPFHATVLTLGPEPE-LRKAAEEVVAALGKEGVEVLFDDRDER 515

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +F  ADLLG P+++ VG K ++   VE K R  G  E + + EV   A+    
Sbjct: 516 AGVKFKDADLLGIPIRIAVGKKGLAAGNVEWKLRKGGAVELVPVGEVARKAAEAVR 571


>gi|322502963|emb|CBZ38047.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 788

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/518 (15%), Positives = 156/518 (30%), Gaps = 94/518 (18%)

Query: 9   PILQENP---RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           P+L E      +A    H+++ R       H+ S G   WLP G +  + +   +R++  
Sbjct: 272 PMLTEWKTIQEEAAKRDHRVIGRQQNLFNFHEVSPGSAFWLPHGTRIYNTLVEFLRKKYR 331

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P + S+ LW+ SG ++ Y   M        +     P +      +F S  
Sbjct: 332 RCGFQEVISPNMYSSKLWMVSGHWEKYADNMFCTKCEK-EDFGLKPMNCPGHCIMFASQP 390

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+ LP  +    +  R+EL     G+ R R F   DA+ F    + +     +M    
Sbjct: 391 HSYKELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQM-QFL 449

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++  LG K       + P     S      +++           +   +P        
Sbjct: 450 SDVYGVLGFKFYFYH-STRPANKLGSDALWDQSESYLRTALNRFCGIPEELPDPLHPDQR 508

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKL-------------------------------FDS 270
                                  E                                  D+
Sbjct: 509 FHYDGKPDSVKKMKALMKKAERCEDPNAWKGPTNGGDGWIENAGDGAFYGPKIDIVVEDA 568

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--------------------------------- 297
           L    + +   ++      FG KY+LP                                 
Sbjct: 569 LRRRHQCATIQLDFNLPSRFGLKYTLPAAEKDETTVSPTEKQKHADPALTASSPAVEDCV 628

Query: 298 -------MSATFKG-------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                    A  +           +   V +    +G++    A++     G    WP  
Sbjct: 629 SKPKPGTYEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAILCEHFGGD---WPFW 685

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           ++P ++ ++ + A +    +  +++   +   G     D+    +  +   A+   +   
Sbjct: 686 LSPRQVMVVPVSASN---YEYSQQVRDTMHDAGFHADVDNGAATLDKKIRNAEKARYNFI 742

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++VG K    + V I+ R      + SL E + +    
Sbjct: 743 LVVGQKEQDATAVNIRARGEKRLGNKSLVEAVQWLKEL 780


>gi|154482657|ref|ZP_02025105.1| hypothetical protein EUBVEN_00330 [Eubacterium ventriosum ATCC
           27560]
 gi|149736433|gb|EDM52319.1| hypothetical protein EUBVEN_00330 [Eubacterium ventriosum ATCC
           27560]
          Length = 667

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 153/452 (33%), Gaps = 41/452 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    E   DA+   H  + R   +        +G+   +P GQ+ +  +   I +
Sbjct: 236 SKDELNKYLEELEDAKNRDHNKLGREMELFTTVDVIGQGLPLLMPKGQRMIQKLQRWIED 295

Query: 60  -EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTD 116
            E N  G +    P +  +DL+  SG +D Y   M  L D   + +     P        
Sbjct: 296 LEDNEWGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDKEVFALRPMTCPFQYY 355

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++++  KSYR+LP  + +    FR+E      G+ R R+F + + +   + P+     + 
Sbjct: 356 VYKASQKSYRDLPCRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQMVEEFK 414

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                       LGL+                   +   D    + +  +  +       
Sbjct: 415 NCIALAQYCLQTLGLEEDVTY-------------HLSKWDPENREKYIGEPEVW---NET 458

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVH-NEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
             D  ++++  +I        AA      +    +   +   +     +           
Sbjct: 459 EQDIRNVLNELNIPFVEDIGEAAFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ----- 513

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +   +G K     +    IG      A +   + GK   W   + P ++ ++ 
Sbjct: 514 ---FDMYYIDENGEKKRPYIIHRTSIGCYERTLAWLIEKYAGKFPTW---LCPEQVRVLP 567

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        +  +K+ A L K G DV  D   E+IG +   A L   P  ++VG +  +D
Sbjct: 568 I---SDKYVEYADKVAAELKKNGIDVTVDSRSEKIGYKIREARLDKLPYMLVVGQQEEAD 624

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V ++ R  G      L+E I          
Sbjct: 625 ETVSVRSRFAGDEGVKPLDEFIEQICKEIRTK 656


>gi|312864390|ref|ZP_07724623.1| proline--tRNA ligase [Streptococcus downei F0415]
 gi|311100111|gb|EFQ58322.1| proline--tRNA ligase [Streptococcus downei F0415]
          Length = 633

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 94/212 (44%), Positives = 135/212 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q + G+YS+LPL  + ++    I+REE
Sbjct: 15  MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVTAGVYSYLPLANRVIEKFKTIMREE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 75  FDKIGAVEMLAPALLTADLWKESGRYETYGDDLYKLKNRDQAEFILGPTHEETFTALVRD 134

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 135 SIKSYKQLPMNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDEAYEAYRQA 194

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 195 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 226



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 15/222 (6%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +     Y    +V  E       +     ARGIE+GHIF  
Sbjct: 408 AVAGANQDGYHLTGVNPGRDFSPKDYVDIREVK-EGEPSPDGQGTLKFARGIEIGHIFKL 466

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 467 GTRYSDSMGANILDENGRSIPIIMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFSWG 526

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQV +D    + ++L K G  V  DD  E++GS+F+ +DL
Sbjct: 527 INFPKELAPFDVHLITVNTKDQVAQDLTANLESQLVKAGYQVLTDDRNERVGSKFSDSDL 586

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   +++ + ++   +
Sbjct: 587 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVNAQNLLETLT 627


>gi|152967010|ref|YP_001362794.1| threonyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|151361527|gb|ABS04530.1| threonyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 656

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 139/435 (31%), Gaps = 41/435 (9%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           SK  L   QE   +AE   H+     L L +    +   G+  + P G      +   +R
Sbjct: 239 SKDELKAYQERVAEAERRDHRRLGAELDLFS-FPDEIGSGLVVFHPKGGVVKREMEDYVR 297

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G   +  P +    L+  SG    Y   M    +  +        +  +   IF
Sbjct: 298 RRHIEEGFSYVGTPHISKGGLFETSGHLPYYEDTMFPGMELENSKYYLKAMNCPMHNLIF 357

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           RS  +SYR LP  F++    +R E      G+ R R     D++S+ +T E +      +
Sbjct: 358 RSRGRSYRELPLRFFEFGSVYRYEKSGVVHGLTRVRGLTQDDSHSY-VTQEQAPGEIKHL 416

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +    GL    +   +                 G+++ F   D           
Sbjct: 417 LDFVLGLLKDFGLDDYYLELSTR----------------GDSEKFIGSDEEWARATEVLE 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                  L+ +        A      + +  D++    ++S    +              
Sbjct: 461 TAARETGLDLV--ADPGGAAFYGPKISVQAKDAIGRTWQMSTIQYDFNQPAR-------- 510

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +  ADG K   V + S   G++     V+   + G     P  +AP ++  I +  
Sbjct: 511 FELEYTAADGTKQRPVMIHSAKFGSLERFFGVLVEHYAGAF---PPWLAPVQVVGIPVA- 566

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    + + A L   G  V  DD  +++  +         P  +I G++ V +  V
Sbjct: 567 --DAHVPHLQDVAAALRAAGVRVEVDDTDDRMPKKIRTWTKQKIPFLLIAGAEDVENGAV 624

Query: 417 EIKHRLTGIREDMSL 431
             + R       + +
Sbjct: 625 SFRFRDGSQENGVPV 639


>gi|302404307|ref|XP_002999991.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261361173|gb|EEY23601.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 790

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 83/477 (17%), Positives = 155/477 (32%), Gaps = 63/477 (13%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L   ++   +A    H+ +         H+ S G   WLP G +  + + A I+E+
Sbjct: 315 SKKELAAHKKWLEEAAARDHRKLGEQQQLFFFHELSPGSAMWLPHGARIYNTLMAYIKEQ 374

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P + ++DLW  SG +  Y  +M  + D + +     P +      +F  
Sbjct: 375 YFKRDYHEVITPNMYNSDLWKVSGHWAHYKDDMF-VMDVDKEQFALKPMNCPGHCLMFGH 433

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             K+Y  LP+      +  R+E      G+ R R F   DA+ F    +        +F 
Sbjct: 434 APKAYHQLPWRVADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-CREDQIGQEITNLFD 492

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG     +R  + P             D  E  +  + D           + 
Sbjct: 493 FLRSMYSLLGFTY-KLRLSTRPDKFMGE---RATWDRAEDMLKVALDEFAATEGGVAWEL 548

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++               A      + K+ D L    + +   ++      FG +Y    S
Sbjct: 549 NEGDG------------AFYGPKIDIKILDCLNREWQCATIQLDFQLPINFGLEYVTADS 596

Query: 300 ATFKGA------------------------------DGKDHYVQMGSYG-IGAMRVVAAV 328
           A                                   DGK+   +          +    +
Sbjct: 597 AAKTKEDAAIKGPEVKAKEPEAVVESAAAAAAPAAADGKEPAKKQLRMSKPLTWKRPPRI 656

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +     GK   WP  ++P +I +I +        +  E++       G  V  D  GE +
Sbjct: 657 LIEHFGGK---WPMWLSPRQIQIIPVGRG---FFEYAEEVQKIFKDAGFWVDVDLSGETL 710

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHR 441
             +   A L  +    IVG + +   +V +++R     +D    + + E I      
Sbjct: 711 QKKVRRAQLAQYNFVFIVGDEEMKGRQVNVRYRDDTSSQDRGKPVDVNEAITKLKEL 767


>gi|317008889|gb|ADU79469.1| prolyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 577

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDEEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALEYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++ ++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSTILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +I+G + +   + E   R    ++ +   E+        ++
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLESREFECIKRANLEKQTLKDIELEEKILEMLAS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|317012082|gb|ADU82690.1| prolyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 577

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 82/166 (49%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D   +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDGAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             + G++    +L+G  L +I+G + + + + E   R    ++ + 
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTLK 562


>gi|126459705|ref|YP_001055983.1| prolyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|166980146|sp|A3MV50|SYP_PYRCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126249426|gb|ABO08517.1| prolyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 487

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 161/436 (36%), Gaps = 69/436 (15%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H L+    +  +    KG Y W P G K   NV A+IR   + TG  E+  P     + +
Sbjct: 24  HWLLREAEIYDVRYPVKGAYVWRPYGMKIRRNVEALIRRLHDETGHEEVLFPVFIPYEFF 83

Query: 81  -VESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             ES     + KE+  ++      + ++  PT E  +  + +  ++ Y++LP   YQI  
Sbjct: 84  GKESEHIRGFEKEVFWVSKGGEGGERLVLRPTSETAIMPMVKLWVQDYKDLPLRLYQIVS 143

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +    ++R RE  M                                        
Sbjct: 144 VFRAETKMTHPMIRLREISM---------------------------------------- 163

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                    +H   V  +  E QV          +      FD++     I  +      
Sbjct: 164 ------FKEAHTVHVDREDAERQV-------REAVEIYKRIFDEMCLAYMINRRPDWDKF 210

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A +                   R +++G + Y GTK++     T+   DG        SY
Sbjct: 211 AGAVYTIAFD------TVLPDGRALQIGTVHYLGTKFTEVFEVTYLAPDGSRRLAHTTSY 264

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
           GI + R +AA++ +  D  G + P  +AP ++ ++ I   ++   V   A E+    L +
Sbjct: 265 GI-SERSIAAMLITHGDDAGTVIPPKLAPIQVVVVPIFYGEEEKGVVMPAAEQAAKALRE 323

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  D    +  G +F   +L G PL+V VG + V   +V +  R T  +  ++++E
Sbjct: 324 AGFRVHVDGRDDKTPGWKFYYWELRGVPLRVEVGKRDVEGRQVVVARRDTLAKYAVAVDE 383

Query: 434 VINYASHRFSNNRPVL 449
           +++      S     L
Sbjct: 384 LVDAVKALLSEVEANL 399


>gi|21220031|ref|NP_625810.1| threonyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289772757|ref|ZP_06532135.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|22654145|sp|Q9L278|SYT_STRCO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6822227|emb|CAB70933.1| threonine-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289702956|gb|EFD70385.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 658

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 139/450 (30%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L    E   +AE   H+ +     +     Q   G+  + P G      +    R 
Sbjct: 241 TKDELKAHLEFLAEAEKRDHRKLGSELDLFSIPEQIGSGLAVFHPKGGIIRRVMEDYSRR 300

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+  SG  D Y   M               P +  +   IF
Sbjct: 301 RHEEEGYEFVYTPHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIF 360

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      +K 
Sbjct: 361 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMSEELDKT 419

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     QV   ++      P   
Sbjct: 420 LTFVLNLLRDYGLNDFYLELSTKDPEKFVGSDEAWEEATETLRQVAEKQNLELVADPG-- 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    ++SL
Sbjct: 478 ------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNLPERFSL 515

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG K   V +     G++    AV+   + G     P  +AP +   I + 
Sbjct: 516 ----EYTAADGAKTRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPVG 568

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E+  A   + G  V  D   +++  +         P  +IVG + +    
Sbjct: 569 ---DAHVQYLEEFAAEARRKGLRVDVDASSDRMQKKIRTQQKQKVPFMIIVGDEDMHGGT 625

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       +  ++ +          
Sbjct: 626 VSFRYRDGSQENGIPRDQALAKLVDVVERR 655


>gi|256788869|ref|ZP_05527300.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 653

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 139/450 (30%), Gaps = 43/450 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L    E   +AE   H+ +     +     Q   G+  + P G      +    R 
Sbjct: 236 TKDELKAHLEFLAEAEKRDHRKLGSELDLFSIPEQIGSGLAVFHPKGGIIRRVMEDYSRR 295

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIF 118
                G   +  P      L+  SG  D Y   M               P +  +   IF
Sbjct: 296 RHEEEGYEFVYTPHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIF 355

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E      +K 
Sbjct: 356 DARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMSEELDKT 414

Query: 178 FVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               L +    GL    +   +  P     S E    A     QV   ++      P   
Sbjct: 415 LTFVLNLLRDYGLNDFYLELSTKDPEKFVGSDEAWEEATETLRQVAEKQNLELVADPG-- 472

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++    F    ++SL
Sbjct: 473 ------------------GAAFYGPKISVQARDAIGRTWQMSTIQLD----FNLPERFSL 510

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG K   V +     G++    AV+   + G     P  +AP +   I + 
Sbjct: 511 ----EYTAADGAKTRPVMIHRALFGSIERFFAVLLEHYAGAM---PPWLAPVQAVGIPVG 563

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E+  A   + G  V  D   +++  +         P  +IVG + +    
Sbjct: 564 ---DAHVQYLEEFAAEARRKGLRVDVDASSDRMQKKIRTQQKQKVPFMIIVGDEDMHGGT 620

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R       +  ++ +          
Sbjct: 621 VSFRYRDGSQENGIPRDQALAKLVDVVERR 650


>gi|219520186|gb|AAI43944.1| TARSL2 protein [Homo sapiens]
          Length = 766

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 137/400 (34%), Gaps = 44/400 (11%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 391 EKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYHKRDFTE 450

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M       D      P +      +F    +S+R +
Sbjct: 451 VLSPNMYNSKLWEASGHWQHYSENMFTFEIEKD-TFALKPMNCPGHCLMFAHRPRSWREM 509

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F  T E  +            ++  
Sbjct: 510 PIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQSVYST 568

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P +            
Sbjct: 569 FGFSF-QLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDG----------- 616

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + K+ D++    + +   ++    F    +++L    T+   DG
Sbjct: 617 ---------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 659

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K   V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 660 DDKKRPVIIHRAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 713

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
            ++ +   + G     D D    +  +   A L  +   +
Sbjct: 714 LQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFIL 753


>gi|294786915|ref|ZP_06752169.1| threonine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315226550|ref|ZP_07868338.1| threonine--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485748|gb|EFG33382.1| threonine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315120682|gb|EFT83814.1| threonine--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 687

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 72/463 (15%), Positives = 144/463 (31%), Gaps = 53/463 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+   Y   + +   RD      ++ L +    +   G+  + P G   ++ +    R +
Sbjct: 243 MKA--YLARLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMKEYSRLQ 299

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGP 108
             +     +  P +    L+  SG    Y   M                 R        P
Sbjct: 300 HRKNHYSFVQTPHITKGGLYETSGHLQWYKDGMYPPMRLDEERDENGNVIREGFDYYLKP 359

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +  +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T 
Sbjct: 360 MNCPMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIY-CTR 418

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKD 226
           E  +     +    L++    GL    +   +        S E    A      V     
Sbjct: 419 EQMRDELKSLLNFVLQLLKDFGLNDFYLELSTKDEHKFVGSDEIWEEATKTLADVAKESG 478

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                 P                       A      + +  D+L    +VS   ++   
Sbjct: 479 LELVDDPG--------------------GAAFYGPKISVQARDALGRTWQVSTIQLD--- 515

Query: 287 IFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++ L     +  ADG +   V +     G++    A++   + G    W   +A
Sbjct: 516 -FNLPERFQL----EYIAADGSRQRPVMIHRALFGSIERFFAILLEHYAGAFPAW---LA 567

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++  + +        D  +++  RL +       D   ++ G +   A     P  +I
Sbjct: 568 PTQVLGVPVADSS---LDYLKEVLDRLDENLVRTELDASDDRFGKKIRNASKSKVPFILI 624

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           VG +      V  + R       +  ++ I + +    ++  V
Sbjct: 625 VGDEDREKGAVSFRFRDGSQLNGVPADQAIAWITEAIDSHAQV 667


>gi|328951623|ref|YP_004368958.1| Prolyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451947|gb|AEB12848.1| Prolyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 477

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 161/449 (35%), Gaps = 84/449 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L    E  + AE+A +  +           G     P G    +N+   + E   
Sbjct: 14  FSEWYL----EVIQRAELADYGPVR----------GTTVLRPYGYALWENIQRTLDEMFK 59

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   +  P       +  E+   + +  E+  +     D  ++ +   PT E ++  +
Sbjct: 60  ATGHQNVYFPLFIPMSFFEREAEHVEGFSPELAVVTHAGGDALEEPLAVRPTSETIIGHM 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++      
Sbjct: 120 WAKWIRSYRDLPQLLNQWGNVVRWEMRTR-PFLRTSEFLWQEGHTAHATQEEAE------ 172

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                              AE+  + G                V+ +       IP    
Sbjct: 173 -------------------AETRRMLG----------------VYATLAREYAAIPVWEG 197

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +       V   T                          + ++ G   Y GT ++  
Sbjct: 198 MKTESEKFAGAVYTTTIE------------------AMMRDGKALQAGTSHYLGTNFAKA 239

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  D +  YV   S+G+ + R + A+I +  D KG+I P  +AP ++ ++ I   
Sbjct: 240 FDIKFQDRDLETKYVHTTSWGL-SWRFIGAIIMTHGDDKGLILPPKLAPIQVVIVPIYKE 298

Query: 358 --DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  +A + +  RL   G  V  DD  +   G +F   +L G P +V +G + V   
Sbjct: 299 ATRARVLEAAQALEQRLKAQGVRVHLDDRDQYTPGYKFNDWELRGVPYRVELGPRDVESG 358

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +  RL G +E + LE +      R +
Sbjct: 359 TAVLASRLGG-KETLPLEGLAEAVPQRLA 386


>gi|319442178|ref|ZP_07991334.1| threonyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 697

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/463 (16%), Positives = 146/463 (31%), Gaps = 56/463 (12%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           SK  L   Q    +AE   H+     L L +    +   G   + P G      +    R
Sbjct: 258 SKEALDEYQTMLAEAEKRDHRRLGSELDLFS-FPDEIGSGFPVFHPDGATVRMEMEEHSR 316

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIY 106
                +G   ++ P +   DL+ +SG  D Y   M      +++                
Sbjct: 317 RRHIASGYSFVNTPHITKGDLFKKSGHLDWYADGMFPAMKLDEERDADGNITKQAVDYYA 376

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  
Sbjct: 377 KPMNCPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-C 435

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCS 224
           T +  +     +    + +    GL    +   +  P     S E    A      V   
Sbjct: 436 TEDQLEVELTTVLEFIISLLKDYGLDDFYLELSTKDPKKFVGSDEVWEKATNTLRAVAEK 495

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 P P                       A      + +  D++    ++S   ++ 
Sbjct: 496 SGLELVPDPE--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD- 534

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
              F    ++       +  +DG K   V +     G++     V+   + G    W   
Sbjct: 535 ---FNLPERF----DLEYTASDGTKQRPVMIHRALFGSIERFFGVLLEHYAGAFPAW--- 584

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP +++ I +           E++ A L   G     D   +++  +         P  
Sbjct: 585 LAPHQVTGIPVA---DEFIPYLEEVTAELRGHGIRAAVDTSDDRMQKKIRNHTTGKVPFM 641

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++VG + V    V  +         +  E+ +   +   S+ R
Sbjct: 642 LLVGGRDVEAGAVSFRFLDGTQVNGVPKEDAVRIIAEWVSSRR 684


>gi|160878906|ref|YP_001557874.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160427572|gb|ABX41135.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 652

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 154/449 (34%), Gaps = 38/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   +     RD      ++ L    +    +G+   +P G K +  +   I +E+ 
Sbjct: 226 LEEFLNHLEDIKKRDHNKLGREMELFA-TVDVIGQGLPLLMPKGAKMIQTLQRWIEDEEE 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFR 119
           R G +    P L   DL+  S  ++ Y + M  L D  D+        P        +++
Sbjct: 285 RRGYMRTKTPLLAKKDLYEISDHWNHYKEGMFVLGDEEDENAEVFALRPMTCPFQYYVYK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              KSYR+LP  + +    FR+E      G+ R R+F + + +   +TPE  +  +    
Sbjct: 345 QSQKSYRDLPCRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VTPEQLEEEFKGCV 403

Query: 179 VSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                    LGL   +  R                  D      +   +     + +   
Sbjct: 404 DLAKYCLTTLGLADDVTYRLSK--------------WDPNNQGKYLGNEETWNKVQNMMR 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D  + I L+    +     A      + +  +   +   +    +++    +   ++   
Sbjct: 450 DILNHIGLD--FTEEDGEAAFYGPKLDIQAKNVYGKEDTMITIQLDM----FLADRF--- 500

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+  A+G K     +    +G      A +   + GK   W   + P ++ ++ I  
Sbjct: 501 -DMTYIDANGEKKRPYIIHRTSMGCYERTLAWLIEKYAGKFPTW---LCPEQVRILPI-- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D  + +   L   G  V  D+  E+IG +   A L   P  ++VG K   +  V
Sbjct: 555 -SEKYSDYAKMVEKELLDNGVLVTVDNRAEKIGYKIREARLDRVPYMLVVGQKEAEEGLV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G      + + ++         
Sbjct: 614 SVRSRYLGDEGQKKVSDFVDAICKEIRTK 642


>gi|39942942|ref|XP_361008.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|58257459|gb|AAW69351.1| threonyl-tRNA synthetase-like protein [Magnaporthe grisea]
 gi|145009886|gb|EDJ94542.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 812

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/487 (17%), Positives = 161/487 (33%), Gaps = 61/487 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++   +   L+E    A    H+ + +       H +S G   WLP G +  + + + IR
Sbjct: 316 KQLTEYQKFLEE----AAKRDHRRIGKDQELFFFHDYSPGSAMWLPHGTRIYNTLLSYIR 371

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E        E+  P + +ADLW +SG +  Y  +M  + D  D      P +      +F
Sbjct: 372 EIYWEKNYEEVITPNIYNADLWKQSGHWQFYKDDMFVIKDEKD-TFGLKPMNCPGHALMF 430

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +S+R LP+      +  R+E      G+ R R F   DA+ F    +  K     +
Sbjct: 431 AHRERSHRELPWRVADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-CREDQIKDEILDL 489

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F    +++  +GL    +R  + P     + E    A+    Q        +  +  E  
Sbjct: 490 FDFLRKMYTVMGLTF-KLRLSTRPEKYMGAIETWDKAEESLRQALDEFAASEGGVAWELN 548

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF---GTKY 294
             D       I                 +L    P+N  +     E          G K 
Sbjct: 549 AGDGAFYGPKIDIAIMDCLNREWQCATIQLDFVQPQNFNLEYMAGEDAAETKAKAEGAKI 608

Query: 295 SLPMSATFKGAD------------------------------------GKDHYVQMGSYG 318
           + P     K                                       G    V +    
Sbjct: 609 TAP-KVKVKDPQAIIDSAAAARGETVVEPAGVEGDKKEKEKVIKKLSPGCARPVMIHRAM 667

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G++     ++   + GK   WP  ++P +I ++ +        D  E++ +   K    
Sbjct: 668 AGSIERFTGILCEHYAGK---WPLWLSPRQILVVPVGKG---FYDYAEEVRSIFKKAKMF 721

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEV 434
           V  D  G  +  +     L  +    +VG++ ++  +V +++R     +D    ++LEE 
Sbjct: 722 VDVDTSGNTLMKKIRTGQLAQYNFIFVVGAEEMNGRQVNVRNRDDPATQDRGQPIALEEA 781

Query: 435 INYASHR 441
           +   +  
Sbjct: 782 LEKLAKL 788


>gi|88856273|ref|ZP_01130933.1| threonyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88814592|gb|EAR24454.1| threonyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 653

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/459 (15%), Positives = 141/459 (30%), Gaps = 51/459 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y     +   RD      +L L +    +   G+  + P G      +    R    + 
Sbjct: 231 EYQARQEEALKRDHRKLGAELDLFS-FPDEIGSGLAVFHPKGGIIRHEMENYSRTRHLQE 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEE 112
           G   ++ P +    L+  SG    Y   M                 R        P +  
Sbjct: 290 GYSFVNTPHITKEALFETSGHLGWYKDGMFPPMHLDEARNEEGEITRQGADYYLKPMNCP 349

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   I++S  +SYR LP   ++    +R+E      G+ R R   M DA+ F  T EG K
Sbjct: 350 MHILIYKSSGRSYRELPMRLFEFGTVYRNEKSGVIHGLTRVRGLTMDDAHIF-TTKEGMK 408

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                     L +    GL    +   +  P       E    A     +V         
Sbjct: 409 AELTNTLNFVLSLLRDYGLTDFYLELSTKDPEKYVGDDEIWDEATQTLAEVAAESGLELV 468

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           P P                       A      + +  D++    ++S   ++    F  
Sbjct: 469 PDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNL 504

Query: 291 GTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG +   V +     G++     V+   + G   +W   ++P ++
Sbjct: 505 PERF----DLEYTAADGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPVW---LSPVQV 557

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             I +    +   +    +  +L  +G     D   E++  +         P Q+I G +
Sbjct: 558 VGIPVA---EAYEEYLGGVVDQLKALGVRAELDASSERMQKKIRTHTKSKIPFQLIAGEQ 614

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             +   +  + R       + + + I   +   S    V
Sbjct: 615 DQAAGSISFRFRDGSQENGIPIADAIARITDAISTRAQV 653


>gi|197124440|ref|YP_002136391.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|226731425|sp|B4UGI0|SYP_ANASK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|196174289|gb|ACG75262.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 574

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/230 (45%), Positives = 139/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  V AI+REE 
Sbjct: 5   RYSQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLAKVEAIVREEM 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +P L  A++W ESGR+D  G  M RL DR       G THEE+ T + R  
Sbjct: 65  DAIGGQEFYLPALHPAEIWKESGRWDVMGDNMFRLKDRKGGDYCLGMTHEEIFTAVARDE 124

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +Y
Sbjct: 125 LRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDRSYEDQRRAY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +IF R GL  + ++A SG +GG  S EF+V  + GE  V          
Sbjct: 185 EKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTEAGEDLVAACPRCRYAA 234



 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +      + +E+GHIF  GTKYS  M AT   A+GK   + MGSYGIG  R++AA
Sbjct: 397 GCPRCDGTLDVFKALEIGHIFKLGTKYSESMKATVLDAEGKQVPIVMGSYGIGVERILAA 456

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            IE  HD  GI++P ++APF  +++ +    +  R A E++ A L K G +V +DD  E+
Sbjct: 457 AIELHHDDNGIVFPMAIAPFHATVLTLGPEPE-LRKAAEEVVAALGKEGVEVLFDDRDER 515

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +F  ADLLG P+++ VG K ++   VE K R  G  E + + EV   A+    
Sbjct: 516 AGVKFKDADLLGIPIRIAVGKKGLAAGNVEWKLRKGGAVELVPVGEVARKAAEAVR 571


>gi|226366073|ref|YP_002783856.1| prolyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|254782912|sp|C1B2Z4|SYP_RHOOB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226244563|dbj|BAH54911.1| prolyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 581

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/223 (44%), Positives = 138/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S+P L   + +  S R+  YG+ + RL DR     + GPTHEE+     +  
Sbjct: 64  NGIGAQEISLPALLPREPYEASNRWTEYGEGLFRLKDRKGGDYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTESYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG+K + + A SG +GG  S EF+  ++ GE      
Sbjct: 184 ERIFARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRC 226



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 26/171 (15%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  G KY+   S    G +GK     MGSYG+G  R+VA + E  HD KG+ 
Sbjct: 419 RGIEIGHVFQLGRKYTDVFSVDVLGENGKPVRPTMGSYGVGVSRLVAVIAEQHHDDKGLR 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL- 398
           WP  V+P  + ++ I   D   R+  E + A L K G +V  DD     G +F  ++LL 
Sbjct: 479 WPAEVSPADVHVV-IANKDDTAREGAEGLAADLDKAGLEVILDDRKASPGVKFKDSELLG 537

Query: 399 -----------GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                      G             + KVE++ R TG   +++ E  ++  
Sbjct: 538 VPLVVVVGRGWG-------------EGKVEVRDRFTGESREVAAESALSEI 575


>gi|295664831|ref|XP_002792967.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226278488|gb|EEH34054.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 764

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 160/461 (34%), Gaps = 33/461 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K ++ + +++R
Sbjct: 316 KQMQEHLKFLEE----AEKRNHLRIGKEQDLFFFDEVSPGCPFLLPNGTKIINALQSLLR 371

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 372 AEYRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMF 430

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +      + +
Sbjct: 431 GHRERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQIMQEIDGL 489

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     ++   G     ++  + P       E    A+             D+ +   + 
Sbjct: 490 FDFLRSVYGLFGFSF-KLKLSTRPEKYMGKLETWNYAEEQLRAALTKFKGNDWEVDEGDG 548

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL- 296
            F       +I +     +         +L   +P N ++     E G       K +  
Sbjct: 549 AFYGPKIDITIQDALKREFQCA----TIQLDYQMPVNFKLEYMTGETGAKAKPADKTTED 604

Query: 297 -------PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                    +++ +   G+   V +    IG+      +I     GK   WP  ++P +I
Sbjct: 605 AANPDAPSTNSSSEPGPGRARPVVIHRAIIGSFERFLGIIIEHFGGK---WPFWLSPRQI 661

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ +        D  E++   L     +V  D  G  +  +     +  +    +VG++
Sbjct: 662 LIVPVMP---AVNDYVEELREILRGDKLNVDIDISGNTMQKKIRSGQIAQYNFIFVVGAQ 718

Query: 410 FVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
             +   V I++R     +     + LEE            R
Sbjct: 719 EKATRTVNIRNRDDPSSQAKGSLVPLEEARVKLRALRKERR 759


>gi|317013684|gb|ADU81120.1| prolyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 577

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 133/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  +  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENVTHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLGEEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAA 231



 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 86/181 (47%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDRCLNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G DV  DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDVLLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|261837685|gb|ACX97451.1| prolyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 577

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +     + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENATHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQST 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRVVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNCDYAA 231



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDNLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|311897171|dbj|BAJ29579.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 586

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/231 (45%), Positives = 140/231 (60%), Gaps = 1/231 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E+P DA+ ASH+L++R G + Q + G YS LPL  +    + A++REE
Sbjct: 1   MRWSQLYVPTLREDPADADAASHRLLVRAGYVRQLAAGHYSLLPLAARVRARIVAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E  +P L  A+LW  +GR++S G+EM RL DR       G THEEV   +   
Sbjct: 61  MERIGAQEFLLPALHPAELWRRTGRWESMGEEMFRLTDRKGAEQALGMTHEEVFAHL-AE 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T+YQ Q KFRDE RPR G++R REF MKD+YSFDL   G   S+    ++
Sbjct: 120 ELRSYRQLPQTWYQFQTKFRDEARPRSGLLRVREFTMKDSYSFDLDEAGMARSFEAHRLA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           YLRIF RLGL +  +RA SG +GG  S EF+  +  GE  V          
Sbjct: 180 YLRIFERLGLPAFGVRASSGAMGGSGSVEFMSPSAAGEDLVVRCPGCGYAA 230



 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 86/156 (55%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IEVGHIF  G +Y+  +     G  G+     MGSYGIG  R++AA++E+ HD +GI 
Sbjct: 423 RTIEVGHIFQLGRRYTEALGVAVAGPAGERVVPLMGSYGIGVERLLAALVEAHHDERGIR 482

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP +VAPF + L  +        +A E++   L   G  V  DD  E+ G +FA A+L+G
Sbjct: 483 WPAAVAPFDLVLTVLPDRGGAVAEAAERLCGELGAAGVRVLLDDRAERPGVKFADAELIG 542

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            P ++ +G++ ++    E+  R  G   ++ L+  +
Sbjct: 543 VPWRLTLGARGLAAGTAELTARADGSTRELGLDAAV 578


>gi|255034032|ref|YP_003084653.1| prolyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254946788|gb|ACT91488.1| prolyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 491

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/470 (17%), Positives = 168/470 (35%), Gaps = 94/470 (20%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ +     E  + A++A +  +           G     P G    + +   + +   
Sbjct: 8   RSENYSEWYNELVKRADLAENSPVR----------GCMVIKPYGYSIWEKMQRALDDMFK 57

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD------------------RNDKA 103
            TG      P       L  E+   + + KE   +                    + ++ 
Sbjct: 58  ETGHTNAYFPLFIPKSYLSKEASHVEGFAKECAVVTHYRLKNDPDGKGVIVDPDAKLEEE 117

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +I  PT E V+   +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++ 
Sbjct: 118 LIVRPTSETVIWSTYKNWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTA 176

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             T + +     +M    L ++ +                                  F 
Sbjct: 177 HATAQEAIAETKQM----LEVYAQ----------------------------------FA 198

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +      I    T  +                                       + ++
Sbjct: 199 EEWMAVPVIKGVKTANERFAGAEDTYCIEAM---------------------MQDGKALQ 237

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G   + G  ++      F+  +GK  YV   S+G+ + R++ A+I +  D  G++ P  
Sbjct: 238 AGTSHFLGQNFANAFDVKFQDKEGKLDYVWGTSWGV-STRLMGALIMAHSDDAGLVLPPK 296

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDMGE-QIGSQFAVADLLG 399
           +AP ++ ++ I  +D+      EK+      L K+G  V +D     + G +FA  +L G
Sbjct: 297 LAPIQVVIVPIYRNDEQLAQISEKVAEITKDLKKLGISVKYDSSDNAKPGFKFAEYELKG 356

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            P+++ +G + + +  VE+  R T  +E +S+  +  Y  +  ++ +  +
Sbjct: 357 VPVRLAMGGRDLENGTVEVARRDTKTKETVSVAGIAAYVQNLLNDIQESI 406


>gi|229159541|ref|ZP_04287556.1| Prolyl-tRNA synthetase 2 [Bacillus cereus R309803]
 gi|228623946|gb|EEK80757.1| Prolyl-tRNA synthetase 2 [Bacillus cereus R309803]
          Length = 502

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 155/448 (34%), Gaps = 77/448 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             TG   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 87  KATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCVRPTSETLFCE 146

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E +     +R+ EFL ++ ++   T          
Sbjct: 147 HFSKIVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETA----EESQA 201

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++ L ++                                    FC        I  + 
Sbjct: 202 ETLNILNLY----------------------------------ASFCEDYLAIPVIKGQK 227

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           TD +      +     +                          + ++ G    FGT +S 
Sbjct: 228 TDKEKFAGAKATYTIESL---------------------MHDGKALQTGTSHNFGTNFSE 266

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 267 AFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQ 325

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +   ++  R+  V   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 326 HKEGVLEKATELQGRIQNV-ARVKVDVSNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQV 384

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  R T  +E +S++++          
Sbjct: 385 VLVRRDTKEKEFISMDQLEERIPSLLEE 412


>gi|307103976|gb|EFN52232.1| hypothetical protein CHLNCDRAFT_49107 [Chlorella variabilis]
          Length = 570

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 137/396 (34%), Gaps = 39/396 (9%)

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
             +R++    G  E+  P + + DLW  SG  D Y + M   +          P +    
Sbjct: 192 DFMRQKYWEYGYEEVVTPNIFNFDLWKVSGHADHYRENMFLFSVEK-AEWGLKPMNCPGH 250

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             +F +  +SYR LP       +  R+E      G+ R R F   DA+ F    +  K  
Sbjct: 251 CLMFANRNRSYRELPLRLADFGVLHRNEFSGALQGLTRVRRFQQDDAHIF-CRQDQVKAE 309

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +        ++   GL    M   + P G     E    A+    +   +        P
Sbjct: 310 ISSYLKMMGEVYDAFGLDY-KMALSTRPEGYLGELEVWNQAEAALEEALNATGREWEMNP 368

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +                     A      +  +FD+L    + +   ++    F F  +
Sbjct: 369 GDG--------------------AFYGPKIDITVFDALRRKYQCATVQLD----FQFPIR 404

Query: 294 YSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++L     +   DG +   V +    +G+   + A++     GK   WP  ++P ++ ++
Sbjct: 405 FNL----EYVAEDGSRQRPVIVHRAILGSAERMFAILTEHWGGK---WPLWISPRQVMIV 457

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +   D    +  +L   G  V  D    ++  +   A L  +   ++VG +   
Sbjct: 458 PI---SEAVYDYASAVRRQLRSAGFHVDADMADRKMQKKVREAQLSQYNYILVVGEEERV 514

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
              V ++ R   +    SL  VI+  S   S+   V
Sbjct: 515 AGTVNVRTRDNQVHGMHSLAGVIDVMSRERSSRSQV 550


>gi|300870022|ref|YP_003784893.1| prolyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687721|gb|ADK30392.1| prolyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 571

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 108/251 (43%), Positives = 157/251 (62%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E P DA IAS+KLM+R  +  + S G+YS+LPLG + L+ ++ IIREE +  G+ 
Sbjct: 1   MPTLKEAPSDAIIASNKLMIRAALARKISNGLYSYLPLGVRVLNKISNIIREEMDAIGSN 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++ I+SY++
Sbjct: 61  ECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQNEIQSYKD 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +Y +IF R
Sbjct: 121 LPVTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSGAYTKIFKR 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +GL ++ ++A+SG +GG+ S EF+VL++ GE  +             +    +D  + + 
Sbjct: 181 MGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSKCNYRANVEKANVMEDEEAKSY 240

Query: 248 IVEQWTAPYAA 258
             +     Y  
Sbjct: 241 TDKALEEVYTP 251



 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 2/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPM 298
           D   + ++            D    K  D  PE   K    +G+E+GHIF  G KY+   
Sbjct: 357 DDTHIKNVNINRDFNVDVWGDFRVAKEGDRCPECGEKLYQKKGLELGHIFKLGDKYTQAF 416

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + T    + K     MG YGIG  R +A+VIE ++D KGII+P SVAP++  ++ I    
Sbjct: 417 NFTVLDENNKAITPIMGCYGIGVNRALASVIEQNYDDKGIIFPISVAPYEAIVVAIDKET 476

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      E+IY  LS +G +  +DD  E++G +    DL+G P+++IVG K +    VE 
Sbjct: 477 EESFKKAEEIYKALSAIGVETMFDDRKERLGVKLNDCDLIGVPMRIIVGKKSLERGVVEF 536

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           K R      ++ LE+++ Y   +
Sbjct: 537 KLRRDLESVEVKLEDIVEYVKAK 559


>gi|289192180|ref|YP_003458121.1| prolyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938630|gb|ADC69385.1| prolyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 455

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/456 (21%), Positives = 170/456 (37%), Gaps = 86/456 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+++  IL++    AEI           +    KG   +LP G K       IIR+ 
Sbjct: 1   MEFSEWYSDILEK----AEIYD---------VRYPIKGCGVYLPYGFKIRRYTFEIIRKL 47

Query: 61  QNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMT 115
            + +G  E   P L   DL   E+     +  E+  +        D  +   PT E  + 
Sbjct: 48  LDESGHDETLFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETPIY 107

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSY 174
            + +  +K + +LP   YQI   FR E +    ++R RE    K+A++   T E ++   
Sbjct: 108 YMMKLWVKVHTDLPIKVYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAEEQV 167

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    Y + F  LG   IP      P                         +  FP   
Sbjct: 168 KQAISIYKKFFDTLG---IPYLISKRPE------------------------WDKFPGAE 200

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
               FD I     ++                                 ++  +   G  +
Sbjct: 201 YTMAFDTIFPDGRVM---------------------------------QIATVHNLGQNF 227

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S      F+   G   Y     YGI + RV+A++I    D KG+I P  VAP +I ++ +
Sbjct: 228 SKTFEILFETPTGGKDYAYQTCYGI-SDRVIASIIAIHGDEKGLILPPIVAPIQIVIVPL 286

Query: 355 --KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             K  ++V  +  +++Y +L      V+ DD   + G +F   ++ G PL++ +G K + 
Sbjct: 287 IFKGKEEVVMEKAKELYEKLKGK-YRVYIDDRDIRPGRKFNDWEIKGVPLRIEIGPKDIE 345

Query: 413 DSKVEIKHRLTGIREDM---SLEEVINYASHRFSNN 445
           + K+ +  R T  +  +    LEEVI    +    N
Sbjct: 346 NKKITLFRRDTMEKFQVDETQLEEVIEKTLNNIMEN 381


>gi|108562666|ref|YP_626982.1| prolyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|123373844|sp|Q1CUR4|SYP_HELPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|107836439|gb|ABF84308.1| prolyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 577

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 133/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I + LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILNDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNCDYAA 231



 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 87/181 (48%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLRASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +I+G + + + + E   R    ++ +   E+        ++
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTIKDIELEEKILEMLAS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|297379463|gb|ADI34350.1| prolyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 577

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 84/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++ ++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSTILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|15827147|ref|NP_301410.1| threonyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229625|ref|YP_002503041.1| threonyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|2501058|sp|O07151|SYT_MYCLE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783529|sp|B8ZUG9|SYT_MYCLB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2193902|emb|CAB09620.1| ThrS [Mycobacterium leprae]
 gi|13092695|emb|CAC29964.1| threonyl-tRNA synthetase [Mycobacterium leprae]
 gi|219932732|emb|CAR70549.1| threonyl-tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 702

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 152/451 (33%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 272 ITEAQRRDHRKLGIELDLFS-FPDEIGSGLAIFHPKGSIVRREMEEYSRRKHIEAGYQFV 330

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y + +      +             +     P +  + T I
Sbjct: 331 NTPHITKAQLFHTSGHLDWYAEGIFPPMHLDAEHNDDGTVRKPGQDYYLKPMNCPMHTLI 390

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F S  +SYR LP   ++    +R E      G+ R+R F M D++ F  T E        
Sbjct: 391 FSSRGRSYRELPLRLFEFGTIYRYEKSGVVHGLTRARGFTMDDSHIF-CTREQLHCELAS 449

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL+   +   +  P     S E    A     +V  +      P P  
Sbjct: 450 LLRFVLDLLGDYGLEDFYLELSTKDPEKFVGSEEIWEEATAALAEVAENSTLPLVPDPG- 508

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L  + ++S   ++    F F  +++
Sbjct: 509 -------------------GAAFYGPKISVQVRDALGRSWQMSTIQVD----FNFPERFA 545

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           L     +  ADG     V +     G++     ++   + G    W   +AP ++  I +
Sbjct: 546 L----EYTSADGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPIQVVGIPV 598

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++ A+L   G     D   +++  +         P  ++ G + V   
Sbjct: 599 TG---EHVSYLEEVAAQLKSCGVRTEVDVSDDRMAKKIVRHTNQKVPFMLLAGDRDVRTG 655

Query: 415 KVEIK--HRL--TGIREDMSLEEVINYASHR 441
            V  +   R    G+  D ++E ++ +   R
Sbjct: 656 SVSFRFGDRTQINGVARDSAVEAIVCWIVDR 686


>gi|118618602|ref|YP_906934.1| threonyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|166225468|sp|A0PSZ4|SYT_MYCUA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118570712|gb|ABL05463.1| threonyl-tRNA synthetase ThrS [Mycobacterium ulcerans Agy99]
          Length = 691

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/461 (16%), Positives = 146/461 (31%), Gaps = 58/461 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLM-LRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           S+  L    E   +A+   H+ + +   +     +   G+  + P G      +    R 
Sbjct: 250 SQEALDTHIELIEEAQRRDHRKLGVELDLFSFPDEIGSGLAVFHPKGGIVRRELEDYSRR 309

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYG 107
           +    G   ++ P +  A L+  SG  D Y   M      +             +     
Sbjct: 310 KHTEAGYQFVNSPHITKAQLFHTSGHLDWYADGMFPPMQIDAEYNTDGTVRKPGQDYYLK 369

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLT 166
           P +  +   IFR+  +SYR LP   ++    +R E      G+ R R   M DA+ F  T
Sbjct: 370 PMNCPMHCLIFRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIF-CT 428

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSK 225
            E  +     +    L +    GL    +   +  P     S E    A     +V    
Sbjct: 429 REQMRDELRSLLRFVLDLLSDYGLTDFYLELSTKDPDKFVGSDEVWEEATNVLAEVGAES 488

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                P P                       A      + ++ D+L    ++S   ++  
Sbjct: 489 SLELVPDPG--------------------GAAFYGPKISVQVKDALGRTWQMSTIQLDF- 527

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                   +       +  ADG     V +     G++     ++   + G    W   +
Sbjct: 528 -------NFPERFGLEYTAADGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAW---L 577

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP +   I +            ++ A+L   G  V  D   +++  +         P  +
Sbjct: 578 APVQAVGIPVA---DEHIAYLGQVAAQLKSHGVRVEVDTSDDRMAKKIVHHTNQKVPFML 634

Query: 405 IVGSKFVSDSKVEIK--HRL--TGIREDMSLEEVINYASHR 441
           + G + V    V  +   R    G+  + ++  ++++ S R
Sbjct: 635 LAGDRDVQADAVSFRFGDRTQINGVPREAAVAAIVDWISRR 675


>gi|145224420|ref|YP_001135098.1| threonyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|189083613|sp|A4TD09|SYT_MYCGI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145216906|gb|ABP46310.1| Ser-tRNA(Thr) hydrolase [Mycobacterium gilvum PYR-GCK]
          Length = 695

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 147/451 (32%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 256 IEEAQRRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGVVRRELEEYSRRKHIEAGYEFV 314

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +    L++ SG  + Y   M      +             +     P +  +   I
Sbjct: 315 NTPHITKEQLYITSGHLEWYADGMFPPMQIDAEYNEDGTVRKPGQDYYLKPMNCPMHHLI 374

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +    +
Sbjct: 375 YRSRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIY-CTREEMRDELAR 433

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S +    A     +V  S      P P  
Sbjct: 434 LLQFVLDLLADYGLDDFYLELSTKDPDKFVGSDDLWEEATETLREVAESSGLALVPDPG- 492

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L  N ++S   ++            
Sbjct: 493 -------------------GAAFYGPKISVQVRDALGRNWQMSTIQLDFNMPDR------ 527

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  +DG +   V +     G++     V+   + G   +W   +AP ++  I +
Sbjct: 528 --FELEYTSSDGTRRRPVLIHRALFGSIERFFGVLTEHYAGAFPVW---LAPVQVVGIPV 582

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      + + A L + G  V  D   +++  +         P  ++ G K V   
Sbjct: 583 A---DAHAGYLDGVAAELRRRGIRVEVDASDDRMAKKIVNHTNQKVPFMLLAGDKDVEAG 639

Query: 415 KVEIK--HRL--TGIREDMSLEEVINYASHR 441
            V  +   R    G+  D ++E ++++ + R
Sbjct: 640 AVSFRFGDRTQINGVPRDQAVEAIVDWVNRR 670


>gi|296139628|ref|YP_003646871.1| threonyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027762|gb|ADG78532.1| threonyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 677

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/456 (15%), Positives = 137/456 (30%), Gaps = 52/456 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +        G+  + P G      +    R+     G
Sbjct: 243 YLELLAEAEKRDHRRLGAELDLFS-FPDALGSGLPVFHPKGGIIRKELEEYSRQRHVDAG 301

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEV 113
              ++ P L  + L+  SG  D Y   M      +             +     P +  +
Sbjct: 302 YEFVNTPHLTKSALYEVSGHLDWYKDGMFPAMHLDAEYDDEGNVTKPGQDYYVKPMNCPM 361

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF +  +SYR LP   ++    +R E      G+ R R     DA+ +  T E    
Sbjct: 362 HNLIFDARGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIY-CTKEQMHG 420

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                    L +    GL    +   +  P       +    A     QV  +      P
Sbjct: 421 ELTTTLKFVLSLLKDYGLDDFYLELSTKNPEKYVGDDDVWEEATKTLQQVAEASGLDLVP 480

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D+L    ++S   ++    F   
Sbjct: 481 DPG--------------------GAAFYGPKISVQAKDALGRTWQMSTIQLD----FNLP 516

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +   DG K   V +     G++     V+   + G    W   +AP ++ 
Sbjct: 517 ERF----ELEYTAPDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPEQVV 569

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +    +   D  E +  +L   G     D   +++  +         P  ++ G + 
Sbjct: 570 GIPVA---EQFGDHLETVIRKLRAEGIRAHVDHSDDRMQKKIRNHTTQKVPFMLLAGERD 626

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                V  + R      ++ +++ +          R
Sbjct: 627 REAGAVSFRFRDGTQVNEVPVDDAVQRIVEWVRARR 662


>gi|325679048|ref|ZP_08158642.1| threonine--tRNA ligase [Ruminococcus albus 8]
 gi|324109172|gb|EGC03394.1| threonine--tRNA ligase [Ruminococcus albus 8]
          Length = 648

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 149/448 (33%), Gaps = 35/448 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L   T  +    +G+   LP G K +  +   I +E+ 
Sbjct: 229 LEEHLKQMEEAKLRDHNKLGRELDYFT-TVDYIGQGLPILLPKGAKVIQTLQRWIEDEEY 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFR 119
           R G      P +   +L+  SG +D Y   M  L D +D+        P        +F 
Sbjct: 288 RRGYQLTKTPFMSKRELYKISGHWDHYRDGMFILGDPDDETKECFALRPMTCPFQYQVFL 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SYR+LP    +    FR E      G++R R+F + + +   + PE  +  +    
Sbjct: 348 NRKRSYRDLPMRLGETSTLFRKEDSGEMHGLIRVRQFTISEGHLI-IRPEQLEDEFKGCL 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    +GL              D+S+ F           +                
Sbjct: 407 ALAKYCLETIGLAE------------DVSYRFSQWDPANPNNKYEGTAEQWEEAQGAMKK 454

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D I L+  +    A  A      + ++ +   +   +    I++        + +   
Sbjct: 455 ILDDIGLDYEIGIDEA--AFYGPKLDIQIKNVFGKEDTLITIQIDM--------QIAKKF 504

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DGK      +    +G      A++   + G   + P  +AP ++ ++ IK  
Sbjct: 505 GMEYVDKDGKMKMPYIIHRTSVGCYERTLALLIEKYAG---VLPLWLAPEQVRILPIKP- 560

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++   +  +G  V  D   + IG +   A     P   I+G   V D  V 
Sbjct: 561 --EHNDYAYELAEEMRDLGMRVEVDGEDDNIGPKIKQARFDRVPYMFIIGDNEVKDRTVT 618

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G    M + + I          
Sbjct: 619 VRSRKEGELPAMPVADAIAKLKEEIDTK 646


>gi|15616855|ref|NP_240068.1| prolyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11134948|sp|P57333|SYP_BUCAI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25293219|pir||B84958 proline-tRNA ligase (EC 6.1.1.15) [imported] - Buchnera sp.
           (strain APS)
 gi|10038919|dbj|BAB12954.1| prolyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 572

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 147/225 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y L   ++ P DA+I SH+LM+R+GMI + S G+Y WLP G + L  +  II  E
Sbjct: 1   MLTSQYLLSTSKDIPYDAKIISHQLMIRSGMIRKTSSGLYVWLPTGMRVLKKIKNIITTE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW ES R + YG+E+LR  DR     I GPT+EEV+T+   S
Sbjct: 61  MEKINALEILMPIIQPEYLWKESRRLNLYGEELLRFLDRRKNQFILGPTNEEVVTNFIGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFG++R+REF MKDAYSF +     +++YNK + S
Sbjct: 121 EIHSYKQLPLTVYQIQTKFRDEIRPRFGIIRTREFTMKDAYSFHINQSCLENTYNKFYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y+ IF ++ L    ++A+SG +GG++SHEF   +  GE ++  S 
Sbjct: 181 YINIFKKMNLNFCAVKADSGSMGGNISHEFQAFSQNGEDEIVFSN 225



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG--IEVGHIFYFGTKYSLPM 298
           +     ++      P     D+      D  P           IE+GHIF  G KYS  +
Sbjct: 366 NKHFFINVNWNIDLPMPIFKDIRKVTKNDLSPNGSGYLNIKQSIEIGHIFQLGQKYSRKI 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AH 357
             + K  +G    + MG YGIG  R+ AAVIE  HD  GIIWPDS+APF++ ++ I    
Sbjct: 426 QQSVKIKNGNLKNLYMGCYGIGITRIAAAVIEQHHDKNGIIWPDSIAPFEVVILPINMKK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D   +     +Y +  K G DV  DD  E+ G  F   DL+G P Q+I+  + ++   VE
Sbjct: 486 DNKIKIIAHFLYKKFKKTGIDVILDDRDERPGVMFNEVDLIGIPHQIIISKRSINYDNVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            + R       ++++++ N+   +   
Sbjct: 546 YRERKNKENILINIKDIKNFIIQKLKK 572


>gi|182414610|ref|YP_001819676.1| prolyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|177841824|gb|ACB76076.1| prolyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 590

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 152/233 (65%), Gaps = 8/233 (3%)

Query: 1   MR-RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           M+  S+YF+P L+E+P DAEIASHKL++R G++ +   G+Y++LPLG + +  +  + RE
Sbjct: 1   MKLWSQYFVPTLKESPADAEIASHKLLIRAGLVRKLGGGLYTYLPLGLRVMQKLTQLCRE 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEE 112
           E  R GAIE+ +P +   +LW +  R+ +  + M R     D          + GPTHEE
Sbjct: 61  ELERAGAIELWMPHVHPVELWQQGPRWAAAREIMFRADSAGDGKHGPREPEFVLGPTHEE 120

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           ++T + ++ I SYR+LP  F+QI  KFR+E+RPRFG+MR+REF+M DAYSFD+  + +  
Sbjct: 121 IVTPLVKAEITSYRDLPKNFFQIATKFRNEIRPRFGLMRAREFVMMDAYSFDVDDDRAIK 180

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           SY  M  +Y   F R+G+++I + A++G +GG  SHEF+V A+ G+  V  ++
Sbjct: 181 SYQAMKAAYEAFFRRIGVQAIAVEADTGVMGGSFSHEFMVPAEVGDDDVIYNE 233



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 84/163 (51%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D          RGIEVGHIF  GTKYS    A +     + H + MGSYGIG  R + A+
Sbjct: 408 DVKSGQPLQVRRGIEVGHIFKLGTKYSEKSGAVYTDDQKQSHLMVMGSYGIGISRTLQAI 467

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE SHD  GI+WP + APF + +  +        D   K+ A   K G +V  DD  E+ 
Sbjct: 468 IEQSHDADGIVWPWNSAPFHVLICVLDPQLAEAVDLARKLAAAAEKAGAEVLVDDRAERP 527

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G +F  ADL+G PL++ +G K + +  VE+K R       + L
Sbjct: 528 GVKFKDADLVGIPLRLTIGGKGLKEGVVELKWRHQKDVAKVPL 570


>gi|223938078|ref|ZP_03629976.1| threonyl-tRNA synthetase [bacterium Ellin514]
 gi|223893292|gb|EEF59755.1| threonyl-tRNA synthetase [bacterium Ellin514]
          Length = 618

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 152/458 (33%), Gaps = 45/458 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              YF  + +   RD      ++ L          G+  WLP G   ++ +  + +E + 
Sbjct: 191 MEAYFTMLEEAKKRDHRKIGQEMGLFAIDTEYVGPGLPLWLPKGTMIVEELENLAKETEF 250

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---------RNDKAMIYGPTHEEV 113
             G + +  P L    ++  SG    Y + M    +            +       +   
Sbjct: 251 AAGYVRVKTPHLAKEKMYKTSGHLPYYAESMFPPMELKEKGGDSNEEAERYYLKAMNCPH 310

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF +   SYR+LP    +    +R E     FG+MR R   M DA+ +  T E    
Sbjct: 311 HHRIFAAEPHSYRDLPLRLAEYGTCYRYEQSGELFGLMRVRSLNMNDAHIY-CTEEQFAD 369

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +N +   YL+ F   GL+   MR  +     +G    +E   L    E  V        
Sbjct: 370 EFNAVNEMYLKYFKIFGLEKYQMRFSTHDPKRLGDKFVNE-PELWKKTEDMVRN------ 422

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             +   N +F ++              A      + +++ ++     ++   ++      
Sbjct: 423 -VLVKNNINFVEV----------PNEAAFYGPKIDVQVWSAIGREFTIATNQVDFAVPAK 471

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           FG         T++  D  +   + +    +G        +   + G   +W   +AP +
Sbjct: 472 FG--------LTYRDRDNTEKTPLCIHRAPLGTHERFIGFLIEHYAGNFPLW---LAPDQ 520

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + ++ I   D+   +  + I   L         D   + I ++ A A+       +++G 
Sbjct: 521 VRVLTI-GDDEALVNYAKLIANELRANMVRCETDFRTDPIKAKIAEAEQTKVHTMLVIGP 579

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +    V ++    G        EVI          R
Sbjct: 580 RDMEAGNVSVRLHGKGSLGAKPKGEVIADILASIKERR 617


>gi|227488772|ref|ZP_03919088.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542231|ref|ZP_03972280.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091194|gb|EEI26506.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182060|gb|EEI63032.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 689

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/456 (15%), Positives = 146/456 (32%), Gaps = 52/456 (11%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +    +   G   + P G      +    R      G
Sbjct: 258 YLTMLEEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPDGGIIRLEMEEHSRRRHLENG 316

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTHEEV 113
              ++ P +   DL+ +SG  D Y   M          D +       +     P +  +
Sbjct: 317 YSFVNTPHITKGDLFQKSGHLDFYADGMFPPMQLDGEYDEDGNCTKQPQDYYAKPMNCPM 376

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              I+ S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E  + 
Sbjct: 377 HNLIYASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTEEQLED 435

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    +     +V  +      P
Sbjct: 436 ELTGVLNFILSLLKDYGLNDFYLELSTKDPNKFVGSDEIWEKSTAILERVAKASGLELVP 495

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P+                      A      + +  D++    ++S   ++    F   
Sbjct: 496 DPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLP 531

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +  +DG K   + +     G++     V+   + G    W   +AP +++
Sbjct: 532 ERF----ELEYTASDGSKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVT 584

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +        D  E +  +L   G     D   +++  +         P  ++ G++ 
Sbjct: 585 GIPVA---DEFVDYLEGVIGKLKAQGIRAEVDTSDDRMQKKIRNHTTGKVPFMLLAGARD 641

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                V  +         +  ++ +   +    + +
Sbjct: 642 QEAGAVSFRFLDGSQVNGVPADKAVEIITSWVRSRK 677


>gi|315586236|gb|ADU40617.1| proline--tRNA ligase [Helicobacter pylori 35A]
          Length = 577

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +I+G + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|290579880|ref|YP_003484272.1| putative prolyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996779|dbj|BAH87380.1| putative prolyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 616

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DA++ SH LM+R G + Q S GIYS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSNMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYSYLPLAHRVIEKIKEIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T++ R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTNLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHADYDSLDATYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R+GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRVGLDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 16/203 (7%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             AA  D+      ++ P+ K V    RGIE+GHIF  GT+YS  M +     +G+   +
Sbjct: 414 FEAAYVDIREVCEGEASPDGKGVLKFARGIEIGHIFKLGTRYSESMGSNILDENGRSIPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MGSYGIG  R+++AVIE +                 G+ +P ++APF + LI +   D+
Sbjct: 474 IMGSYGIGVSRILSAVIEQNARIFVNKTPKGAYRFSWGVNFPKTLAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +    K+   L      V  D+  E+IGS+F+ +DL+G P++V VG K  SD  VE+K
Sbjct: 534 VSQQLTAKVEESLVDAHYSVLTDNRNERIGSKFSDSDLIGLPIRVTVGKK-ASDGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            + TG   +++ E ++   S   
Sbjct: 593 IKSTGDTIEVNAENLLETLSILI 615


>gi|146302666|ref|YP_001197257.1| prolyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|259511597|sp|A5FA31|SYP_FLAJ1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146157084|gb|ABQ07938.1| prolyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 492

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 164/452 (36%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A +      TG      P      ++ 
Sbjct: 17  NELVVKADLAENSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKSMFE 76

Query: 82  ESG--------------RYDSYGKE------MLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                             Y     E      M+    + ++ +I  PT E ++   ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKNDEDRPGKLMVDPNAKLEEELIVRPTSEAIIWSTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T + +     KM    
Sbjct: 137 VQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATKDEAIEESEKMMN-- 193

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                         V AD  E             +    T+ + 
Sbjct: 194 ------------------------------VYADFAE------NFMAIPVVKGFKTETER 217

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +                                 + ++ G   + G  ++      
Sbjct: 218 FAGADETYCIEAL---------------------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F  A+GK  +V   S+G+ + R++ A+I +  D +G++ P ++AP ++ ++ I   D+  
Sbjct: 257 FANAEGKQEHVWGTSWGV-STRLMGALIMTHSDDQGLVLPPNLAPIQVVIVPIHKTDEQL 315

Query: 362 RD---ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                A  ++ A+L K+   V +DD   ++ G +FA  +L G P+++ VG K + +   E
Sbjct: 316 AQITAAVNELTAKLRKLKISVKYDDRTTQKPGFKFAEWELKGVPVRIAVGPKDLENGTFE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R    +E ++ E+++++ +      +  L
Sbjct: 376 VARRDNLSKEVVAAEKIVDHVNDLLEQIQKDL 407


>gi|315444753|ref|YP_004077632.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mycobacterium
           sp. Spyr1]
 gi|315263056|gb|ADT99797.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mycobacterium
           sp. Spyr1]
          Length = 695

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 147/451 (32%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 256 IEEAQRRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGVVRRELEEYSRRKHIEAGYEFV 314

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +    L++ SG  + Y   M      +             +     P +  +   I
Sbjct: 315 NTPHITKEQLYITSGHLEWYADGMFPPMQIDAEYNEDGTVRKPGQDYYLKPMNCPMHHLI 374

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +    +
Sbjct: 375 YRSRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIY-CTREEMRDELAR 433

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S +    A     +V  S      P P  
Sbjct: 434 LLQFVLDLLADYGLDDFYLELSTKDPDKFVGSDDLWEEATETLREVAESSGLALVPDPG- 492

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L  N ++S   ++            
Sbjct: 493 -------------------GAAFYGPKISVQVRDALGRNWQMSTIQLDFNMPDR------ 527

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  +DG +   V +     G++     V+   + G   +W   +AP ++  I +
Sbjct: 528 --FELEYTSSDGTRRRPVLIHRALFGSIERFFGVLTEHYAGAFPVW---LAPVQVVGIPV 582

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D    + A L + G  V  D   +++  +         P  ++ G K V   
Sbjct: 583 AVAHAGYLDG---VAAELRRRGIRVEVDASDDRMAKKIVNHTNQKVPFMLLAGDKDVEAG 639

Query: 415 KVEIK--HRL--TGIREDMSLEEVINYASHR 441
            V  +   R    G+  D ++E ++++ + R
Sbjct: 640 AVSFRFGDRTQINGVPRDQAVEAIVDWVNRR 670


>gi|308063100|gb|ADO04987.1| prolyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 577

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIASN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 83/181 (45%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   + K+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNAKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D   +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDGAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDIELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|298736816|ref|YP_003729346.1| prolyl-tRNA synthetase [Helicobacter pylori B8]
 gi|298356010|emb|CBI66882.1| prolyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 577

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR +   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKNNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNCDYAA 231



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 87/181 (48%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + + + + E   R    ++ +   E+        ++
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLENKEFECVKRANLEKQTIKDIELEEKILEILAS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|294901580|ref|XP_002777422.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239885058|gb|EER09238.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/466 (16%), Positives = 154/466 (33%), Gaps = 43/466 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
            +L+E  +   +A    H+L+ +       H   S G   W   G    + +   IR E 
Sbjct: 331 KMLKEYKKNVEEAMKRDHRLIGKKQDLFFFHPTMSPGSCFWTSHGAVIYNKLVDFIRREY 390

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + S  L+ +SG   +Y   M    +   +     P +      IF   
Sbjct: 391 RLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS-MNIEGETWYLKPMNCPGHCMIFDQK 449

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP       +  R+EL     G+ R R F   DA+ F   P+  +         
Sbjct: 450 VRSYKELPIRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CRPDQVQDEITHALEF 508

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
              +++  G     +   + P     S      A+ G      +        P +   + 
Sbjct: 509 LKFVYNTFGFDF-SVCLSTRPKKAIGSRAIWDTAENGLKNALEACGIDYDLNPGDGAFYG 567

Query: 240 --DDIISLNSIVEQWTAPYA------------ATSDVHNEKLFDSL--------PENKRV 277
              DI   +++                            E+  D+         P +   
Sbjct: 568 PKIDIRLRDALNRYHQCGTIQLDFNLPIRFNLQYRTAETEESGDAHSVSEAANSPADDHQ 627

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              G     +   G+K +     T      G +  V +    +G++    A++   + GK
Sbjct: 628 EKAGQNSAAVENVGSK-AKADEITLGELKHGFERPVMVHRAILGSIERCTAILTEHYGGK 686

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              WP  ++P ++ ++ +        D  + +  +L ++G +   D     +  +   A 
Sbjct: 687 ---WPFWLSPRQVMVVPV---SDKYSDYADYLRKQLVRLGYEADADLSTRTMNKKVREAQ 740

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASHR 441
           +  +    +VG K  +D  V ++ R T        + E+++     
Sbjct: 741 VAAYNYIAVVGEKEQNDLTVTLRKRDTVRPLGTFGIAEMLDMFEKE 786


>gi|302525268|ref|ZP_07277610.1| prolyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302434163|gb|EFL05979.1| prolyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 578

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/222 (42%), Positives = 136/222 (61%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SH+L++R G + + + G YSWLPLG + L  V  ++REE N
Sbjct: 1   MSSLFLRTLREDPADAEVPSHRLLVRAGYVRRVAPGGYSWLPLGLRVLRRVEEVVREEMN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +   
Sbjct: 61  AIGAQEIQFPALLPREPYEATNRWTEYGDNLFRLKDRKGADYLLGPTHEELFALTVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG + SY     +Y+
Sbjct: 121 SSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDEGLERSYQAHRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           ++F RLG++ + + A SG +GG  S EF+ +A+ GE     S
Sbjct: 181 KLFDRLGIEYVIVAATSGAMGGSASEEFLAVAENGEDTFVRS 222



 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                  V+ARGIE+GHIF  G KY+        G D K   + MGSYG+G  R+VA + 
Sbjct: 406 PDGHGTLVAARGIEIGHIFQLGRKYTDAFEVDALGPDSKPVRITMGSYGVGVSRLVAVLA 465

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E +HD +G++WP  V+PF + ++ I   D+  R+  EK+ A L   G ++  DD     G
Sbjct: 466 EQNHDEQGLVWPREVSPFDVHVV-IAGKDETVREGAEKLAAELDAAGLEIILDDRKATPG 524

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +FA A+L+G P  ++VG + +++  VE+K R TG RE+++++ V+++ +    
Sbjct: 525 VKFADAELVGVPTILVVG-RGLANGLVEVKDRRTGEREEIAVDSVVDHLAKLVR 577


>gi|327288851|ref|XP_003229138.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 706

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 140/435 (32%), Gaps = 66/435 (15%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +    +A    H+ + +       H+ S G   +LP G      +   I+ E  + G  E
Sbjct: 317 ERTQEEAARRDHRRIGKEQELFFFHELSPGSCFFLPKGAHIYTTLVDFIKSEYLKRGFSE 376

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y + M        +     P +      +F    +S+R L
Sbjct: 377 VITPNIFNSKLWETSGHWQHYEENMFSFR-LEGETFALKPMNCPGHCLMFGHRPRSWREL 435

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P       +  R+E      G+ R R F   DA+ F    +  +            ++  
Sbjct: 436 PLRLADFGVLHRNEPSGALSGLTRVRRFQQDDAHIFCAM-DQLEGEIRSCLDFLQAVYSV 494

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G  ++     + P         I L D  E      K                      
Sbjct: 495 FGF-TLRFYLSTRPEKFLGE---IHLWDQAELVDIQIK---------------------- 528

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                                D+L    + +   ++      F   Y+    AT      
Sbjct: 529 ---------------------DALGRFHQCATIQLDFQMPIRFDLSYTSKEGAT------ 561

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +  V +    +G++  + AV+  ++ GK   WP  ++P +I +I +    +       +
Sbjct: 562 PERPVMIHRAVLGSVERMMAVLAENYGGK---WPFWLSPSQIMVIPVGPDAES---YAHE 615

Query: 368 IYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           I+    + G     D D G  +  +   A L  +  Q +VG K +S+  + ++ R     
Sbjct: 616 IHQTFHQAGFTTDVDLDPGTTLNRKIRNAQLAQYNFQFVVGRKEMSNRTLNVRSRDGHRH 675

Query: 427 EDMSLEEVINYASHR 441
            +     V++     
Sbjct: 676 GERDFNAVLDRLKEL 690


>gi|60416072|gb|AAH90718.1| Zgc:92586 protein [Danio rerio]
          Length = 359

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 130/384 (33%), Gaps = 37/384 (9%)

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW  SG +  Y + M        +     P +      +F    +
Sbjct: 3   RGFQEVVTPNIYNSKLWQTSGHWQHYSENMFSFEVEK-EIFALKPMNCPGHCLMFDHRPR 61

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R LP       +  R+EL     G+ R R F   DA+ F  + +  +           
Sbjct: 62  SWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CSMDQIESEIKGCLDFLR 120

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 121 TVYDVFGFTF-KLNLSTRPEKFLGEPEVWDQAEKQLENSLNDFGEKWVLNPGDG------ 173

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ D++    + +   ++    F    +++L      
Sbjct: 174 --------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--VS 213

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ I      C 
Sbjct: 214 HDGDDKKRPVIIHRAILGSVERMIAILTENYGGK---WPLWLSPRQVMVVPIGP---TCD 267

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +++     KVG     D D G  +  +   A L  +   ++VG K  S   V ++ R
Sbjct: 268 EYAQRVQKEFHKVGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSDTVNVRTR 327

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  + SL + +       ++ 
Sbjct: 328 DNKVHGERSLTDCMERLKQLKASR 351


>gi|126172877|ref|YP_001049026.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS155]
 gi|125996082|gb|ABN60157.1| tRNA synthetase, class II (G, H, P and S) [Shewanella baltica
           OS155]
          Length = 403

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 143/435 (32%), Gaps = 44/435 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +     + +L L        + G+  W P G     ++   +R    R G  E++ P   
Sbjct: 2   KTHREIAEQLDLF--HSEPQAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFM 59

Query: 76  SADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++
Sbjct: 60  KKELWQTSGHMDMFAENMFFGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFE 119

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++
Sbjct: 120 FGLVHRNESSGSLNGCLRARQFTQDDAHVFCCWS-QAEEEIRGFLQRAKQVYGDYGYHNL 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  + P     S E    A          + F       E   +   I L+       
Sbjct: 179 DVKISTKPEKSLGSDEQWCRAQKLLDSACHIEGFDAEYQAGEGAFYGPKIELSLTDSM-- 236

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGK-DH 310
                                     R  + G I +    ++LP      +    G+ + 
Sbjct: 237 -------------------------GRRWQCGTIQF---DFNLPERFDVQYANEQGEFER 268

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V M     G++     ++     G   +W   + P  +++ ++    +       ++  
Sbjct: 269 PVIMHQAMYGSIERWLGILLEVSQGNLPVW---LHPVPVAIASVN---ESNSQFVRQLAT 322

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                   V  D     +  +         P  + VG K  ++++V +K R  G+   + 
Sbjct: 323 LCLARDIRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAENRVSVKCRKDGVITHVP 382

Query: 431 LEEVINYASHRFSNN 445
           L E+ +Y + +    
Sbjct: 383 LAELADYLADKLEGK 397


>gi|291542076|emb|CBL15186.1| prolyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 479

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 164/446 (36%), Gaps = 79/446 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R + F     +  + AE+  +  +          KG     P G    +N+ A +     
Sbjct: 14  RDEDFAKWYTDIVKKAELVDYSGV----------KGCMVIRPYGYAIWENIQADLDRRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E   +     ++  + +   PT E +  + 
Sbjct: 64  ETGHENVYMPMFIPESLLQKEKDHVEGFAPECAWVTVGGQEKLQERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  I +YR+LP  + Q     R E +     +R+ EFL ++ ++   T E ++    +M
Sbjct: 124 YKKIINTYRDLPKLYNQWCSVVRWE-KTTRPFLRTSEFLWQEGHTMHETEEEAREETLRM 182

Query: 178 FVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              Y   +   L + ++        IG     E    A+   T                 
Sbjct: 183 LHVYSDFYKETLAIPAV--------IGRKTEKEKFAGAEETYT----------------- 217

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                                               E    +   ++ G   YFG  ++ 
Sbjct: 218 -----------------------------------IEPMMHNGVALQGGTSHYFGDGFAK 242

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               T+ G D K HY    S+G+ + R++ A+I    D  G++ P  ++P +++LI +  
Sbjct: 243 SFGITYTGKDNKLHYPHQTSWGV-STRMIGALIMVHSDDDGLVLPPKISPIQVALIPVAQ 301

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +  E++   L++    V  D      G +FA  ++ G P++V +G K +  ++ 
Sbjct: 302 HKEGVLEKAEELRKALAEK-FRVKLDSSDHAPGWKFAEYEMKGVPVRVEIGPKDIEKNQC 360

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            +  R T  +  +S++E++ +  +  
Sbjct: 361 VVVRRDTREKAFVSIDELVPFVENLM 386


>gi|86160363|ref|YP_467148.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|114152165|sp|Q2IGK6|SYP1_ANADE RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|85776874|gb|ABC83711.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 575

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/230 (45%), Positives = 139/230 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R ++ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  + AI+REE 
Sbjct: 5   RYTQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLTKIEAIVREEM 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E  +P L  A++W ESGR++  G  M RL DR       G THEE+ T I R  
Sbjct: 65  NAIGGQEFFLPALHPAEIWKESGRWEVMGDNMFRLKDRKGGDYGLGMTHEEIFTAIARDE 124

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +Y
Sbjct: 125 LRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDKSYEDQRQAY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +IF R GL  + ++A SG +GG  S EF+V  D GE  V          
Sbjct: 185 EKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTDAGEDLVAACPRCRYAA 234



 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/176 (39%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +      + +EVGHIF  GTKYS  M AT   A GK   + MGSYGIG  R++AA
Sbjct: 397 GCPRCDGALEVFKALEVGHIFKLGTKYSESMKATVLDAGGKQVPIVMGSYGIGVERILAA 456

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            IE  HD  GI++P ++APF  +++ +    +  R A E++ A L K G +V +DD  E+
Sbjct: 457 AIELHHDDNGIVFPMAIAPFHATVLTLGPEPE-LRKAAEEVVAALGKEGVEVLFDDRDER 515

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +F  ADLLG P++V VG K ++   VE K R  G  E + L EV   A+    
Sbjct: 516 AGVKFKDADLLGIPIRVAVGKKGLAAGNVEWKLRRGGAVELVPLGEVARKAAEAVR 571


>gi|323359943|ref|YP_004226339.1| threonyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323276314|dbj|BAJ76459.1| threonyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 666

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 141/461 (30%), Gaps = 58/461 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +   L+E   RD      +L L +    +   G+  + P G      +   +RE    
Sbjct: 234 RAYQHRLEEAAKRDHRKLGKELDLFS-FPDEIGPGLSVFHPKGGIIRYEIERYMRERLLA 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHE 111
           +G   ++ P +   DL++ SG    Y   M                 R  +     P + 
Sbjct: 293 SGYEVVNTPHITKGDLFMTSGHLQWYADGMYPPMVLDEVVDADGHVSREGQEYYLKPMNC 352

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGS 170
                IFRS  +SYR LP    +    +R E      G+ R R     D + + +T +  
Sbjct: 353 PFHNLIFRSRGRSYRELPLRLSEFGSVYRYEKSGTLSGLTRVRGMTQDDTHIY-VTADQV 411

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-----GDLSHEFIVLADTGETQVFCSK 225
           K          L+     GL    +   +   G     GD S    V A     +V  + 
Sbjct: 412 KGELTHSLDFVLQTLRDYGLNDFYLELSTKEEGNPKFIGDDS--LWVEATETLREVAEAS 469

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                P P                       A      + +  D++    ++S   ++  
Sbjct: 470 GLELVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTIQLDFN 509

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           + G DG+ H  V +     G++    A++   + G   +W    
Sbjct: 510 QPER--------FELEYTGPDGEKHRPVMIHRALFGSVERFFAILLEHYAGAFPVWLSP- 560

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
                  +          D  + I A L   G     D   +++  +         PL +
Sbjct: 561 -----VQVVAVPVAAEYGDYLQGIVADLKSKGVRAEADHSDDRMQKKIRTHTTQKVPLML 615

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           I G +  S+  V  + R       + ++E +   +   S+ 
Sbjct: 616 IAGEQDRSNGTVSFRFRDGTQLNGIPVDEAVARITGAISSR 656


>gi|308177541|ref|YP_003916947.1| threonine--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307745004|emb|CBT75976.1| threonine--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 671

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/465 (15%), Positives = 147/465 (31%), Gaps = 60/465 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L   QE   +AE   H+ +     +     +   G+  + P G      +   +R+
Sbjct: 240 TKDDLKAYQERLAEAERRDHRKLGAELDLFSFPDELGSGLPVFHPKGGIIKREMEDYVRD 299

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYG 107
                G   +  P +    L+  SG    Y   M      +++                 
Sbjct: 300 RHVEEGFQYVGTPHISKDGLFHTSGHLPYYADTMFPALHIDEERDEDGNITKQGQEYRLK 359

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLT 166
             +  +   IFR   +SYR LP   ++    +R E      G+ R R F   D++S+ +T
Sbjct: 360 AMNCPMHNLIFRGRGRSYRELPLRLFEFGHVYRYEKSGVVHGLTRVRGFSQDDSHSY-VT 418

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFC 223
            E +      +    L +    G+    +   +     D    S E    A     +V  
Sbjct: 419 KEQAPAEVEHLLNFMLSLLRDFGMDDFYLELSTRDPESDKFIGSDEQWNEATAVLERVAT 478

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                    P     +   IS+ +                           K    R  +
Sbjct: 479 ESGVELVADPGGAAFYGPKISVQA---------------------------KDAIGRTWQ 511

Query: 284 VGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           +G + Y    ++ P      ++ ADG     V + +   G++     V+   + G    W
Sbjct: 512 MGTVQY---DFNQPARFGLEYQAADGTRQEPVMIHAAKFGSIERFLGVLTEHYAGAFPAW 568

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              ++P ++  I +    +   D   ++ A+L   G  V  DD  ++   +   A     
Sbjct: 569 ---LSPVQVRAIPVA---EAFNDYLGEVVAKLKAAGVRVELDDSSDRFPKKIRNASKDKI 622

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P  +I G +    + V  + R       + +++ +        + 
Sbjct: 623 PFVLIAGGEDADANAVSFRFRDGSQENQVPVDDAVARIVEAIKSR 667


>gi|322495387|emb|CBZ30691.1| putative threonyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 787

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/518 (15%), Positives = 159/518 (30%), Gaps = 94/518 (18%)

Query: 9   PILQENP---RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           P+L E      +A    H+++ R       H+ S G   WLP G +  + +   +R++  
Sbjct: 271 PMLTEWKMIQEEAAKRDHRVIGRQQNLFNFHEVSPGSAFWLPHGARIYNTLVEFLRKKYR 330

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + S+ LW+ SG ++ Y   M        +     P +      +F S  
Sbjct: 331 CCGFQEVISPNMYSSKLWMVSGHWEKYADNMFCTKCEK-EDFGLKPMNCPGHCIMFASQP 389

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+ LP  +    +  R+EL     G+ R R F   DA+ F    + +     +M    
Sbjct: 390 HSYKELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQM-QFL 448

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++  LG K       + P     S      +++           +   +P        
Sbjct: 449 SDVYGVLGFKFYFYH-STRPANKLGSDALWDQSESYLRTALNRFCGIPEELPDPLHPDQR 507

Query: 242 IISLNSI-------------------------------VEQWTAPYAATSDVHNEKLFDS 270
                                                   +     A      +  + D+
Sbjct: 508 FHYDGKPDSVKKMKMLMKKAERSEDPNAWKGPTNGSEGWIENAGDGAFYGPKIDIVVEDA 567

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--------------------------------- 297
           L    + +   ++      FG KY+LP                                 
Sbjct: 568 LRRRHQCATIQLDFNLPSRFGLKYTLPTAEKDEATVGPTEKRRHADPASTASSPAVAEGE 627

Query: 298 -------MSATFKG-------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                    A  +           +   V +    +G++    A++     G    WP  
Sbjct: 628 SKPKPGTYEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAILCEHFGGD---WPFW 684

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           ++P ++ ++ + A +    +  +++   +   G     D+    +  +   A+   +   
Sbjct: 685 LSPRQVMVVPVSASN---YEYSQQVRDTMHDAGFHADVDNGAATLDKKIRNAEKARYNFI 741

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++VG +    + V I+ R      + SLEE + +    
Sbjct: 742 LVVGQQEQDATGVNIRARGERRLGNKSLEEALQWFKEL 779


>gi|317180044|dbj|BAJ57830.1| prolyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 577

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|213966110|ref|ZP_03394297.1| threonyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951208|gb|EEB62603.1| threonyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 686

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/458 (15%), Positives = 145/458 (31%), Gaps = 51/458 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   +L+   RD      +L L +    +   G   +   G    + +    R    
Sbjct: 252 LDEYLDRMLEAEKRDHRRLGSELDLFS-FPDEIGSGFPVFHVKGGIIRNEMEQHSRRRHI 310

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTH 110
             G   ++ P +   DL+ +SG  D Y   M          D +       +     P +
Sbjct: 311 EAGYDFVNTPHVTKGDLFKKSGHLDFYADGMFPPMQLDGEYDEHGNCTKAPQDYYVKPMN 370

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 371 CPMHNLIFASRGRSYRELPIRMFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQ 429

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFM 228
            +     +    + +    GL    +   +        S E    +     +V  +    
Sbjct: 430 LEEELTNVLDFIISLLRDYGLDDFYLELSTKDEKKFVGSDEIWEKSTAILQRVADASGLE 489

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P P                       A      + +  D++    ++S   ++    F
Sbjct: 490 LVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----F 525

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               ++       +   DG K   + +     G++     V+   + G    W   +AP 
Sbjct: 526 NLPERF----ELEYTAPDGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPE 578

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++  I +      C    E   A+L   G  V  D   +++  +         P  ++ G
Sbjct: 579 QVVGIPVADD---CIPHLEDFAAQLKSRGIRVHVDTSDDRMQKKIRNHTQAKVPFMILAG 635

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ +    V  +         +++E+ ++      ++ 
Sbjct: 636 ARDIEAGAVSFRFLDGTQINGVAVEKAVDIICDWVASR 673


>gi|84999652|ref|XP_954547.1| prolyl-trna synthetase [Theileria annulata]
 gi|65305545|emb|CAI73870.1| prolyl-trna synthetase, putative [Theileria annulata]
          Length = 702

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 162/448 (36%), Gaps = 56/448 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            ++++   AE  S ++++R+ MI  +   G Y +LP      +  N    ++  + G   
Sbjct: 208 TVKKHENFAEWYS-QVIIRSEMIEYYDISGCYIFLPSSYFIWETFNEWFNKQIKQRGVEN 266

Query: 69  MSVPTLQSAD-LWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIK 123
              P   + + L  E    + +  E+  +    D      +   PT E +M   F   I+
Sbjct: 267 CYFPMFVTKEKLEAEKTHLEGFSPEVAWVTRNGDVDLPDPIAIRPTSETIMYPEFARWIR 326

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           S+R+LP    Q     R E +     +RSREFL ++ ++   T + +  +  +M   Y +
Sbjct: 327 SHRDLPLKLNQWNSVVRWEFKQPTPFIRSREFLWQEGHTAHTTEQEALDTVYEMLNLYSK 386

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                 +  I +   S                      F  +      I    ++ +   
Sbjct: 387 -----YILVINVLIMSR---------------------FYEEYLSVPVIKGVKSENEKFA 420

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                    +   A                      RG++       GT +S      ++
Sbjct: 421 GSKMTTSLESFIPANG--------------------RGVQAATSHLLGTTFSDMFDIRYE 460

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCR 362
             +G    V   S+G    R +  +I    D KG++ P  VA  ++ ++ I +   +   
Sbjct: 461 DEEGVKQKVHQTSWGFT-TRSIGIMIMVHGDDKGLVLPPRVAKVQVVIVPIMSKTAEQVM 519

Query: 363 DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++  L++ G  V  DD  G   G +F   +L G PL++ VG+K V ++ V +  R
Sbjct: 520 LRVNELFQLLTEAGFRVKLDDRRGYTPGFKFNHWELRGVPLRLEVGAKDVENNTVRLVRR 579

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
               + D+ LE +           +  L
Sbjct: 580 DNFAKSDVPLENLTETIHQLLDEIQNSL 607


>gi|111023587|ref|YP_706559.1| prolyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|122955090|sp|Q0S235|SYP1_RHOSR RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|110823117|gb|ABG98401.1| proline--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 581

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 99/223 (44%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S+P L   + +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NGIGAQEISLPALLPREPYEASNRWTEYGDGLFRLKDRKGGDYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG+K + + A SG +GG  S EF+  ++ GE      
Sbjct: 184 ERIFSRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRC 226



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 26/176 (14%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GH+F  G KY+   S    G +GK     MGSYG+G  R+VA + E  HD KG+ 
Sbjct: 419 RGIEIGHVFQLGRKYTDVFSVDVLGENGKPVRPTMGSYGVGVSRLVAVIAEQHHDEKGLR 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL- 398
           WP  V+P  + ++ I   D+  R+  E + A L K G +V  DD     G +F  ++LL 
Sbjct: 479 WPAEVSPADVHVV-IANKDETAREGAEGLAAELDKAGLEVILDDRKASPGVKFKDSELLG 537

Query: 399 -----------GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                      G             + KVE++ R TG   +++ E  ++       
Sbjct: 538 VPLVVVVGRGWG-------------EGKVEVRDRFTGESREVAAESALSEIVKAVR 580


>gi|310287485|ref|YP_003938743.1| threonyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251421|gb|ADO53169.1| threonyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 676

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/460 (15%), Positives = 144/460 (31%), Gaps = 52/460 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPEEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 420 KDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDL 479

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P                       A      + +  D++    +VS   ++    F 
Sbjct: 480 VADPG--------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPV--ADEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + ++++ V  + R       + ++E              V
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDEAREKILAVIKKRAQV 665


>gi|225560803|gb|EEH09084.1| threonyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 750

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 154/469 (32%), Gaps = 38/469 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + + A++R
Sbjct: 291 KQMQEHLKFLEE----AEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQALLR 346

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 347 SEYRKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMF 405

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F    +      + +
Sbjct: 406 GHRERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCA-EDQIMQEIDGL 464

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ +   + 
Sbjct: 465 FDFLRAIYGLFGFSF-KLKLSTRPEKYMGKLETWNNAEDQLRAAMTKFKGNDWEVDEGDG 523

Query: 238 DFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VG 285
            F     D+   +++  ++                      +  +    E          
Sbjct: 524 AFYGPKIDVTIQDALKREFQCATIQLDYQMPVNFKLEYMTGETGAKAKPEEKSAGAPAAK 583

Query: 286 HIFYFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                    + P       +D    G+   V +    IG+      +I     GK   WP
Sbjct: 584 TADKPAGDAAKP-DVPPTNSDEPGPGRARPVVIHRAIIGSFERFFGIIIEHFGGK---WP 639

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             ++P +I ++ +        D  E++   L +   +V  D  G  +  +     +  + 
Sbjct: 640 FWLSPRQILIVPVMP---AVNDYVEELQRILKEDKLNVDIDISGNTMQKKIRTGQIAQYN 696

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
              +VG++  S   V I++R     +     + LEE            R
Sbjct: 697 FIFVVGAEEKSTRTVNIRNRDDPSSQAKGSLVPLEEARAKLRALRKERR 745


>gi|171185819|ref|YP_001794738.1| prolyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|259511627|sp|B1Y963|SYP_THENV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170935031|gb|ACB40292.1| prolyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 487

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 158/430 (36%), Gaps = 69/430 (16%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H L+    +  +    KG Y W P G K   NV  +IR   + TG  E+  P     + +
Sbjct: 23  HWLLREAELYDVRYPVKGAYVWRPYGMKLRRNVEELIRRVHDETGHEEVLFPVFIPYEFF 82

Query: 81  -VESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             ES     + KE+  ++      + ++  PT E  +  + +  I+ Y++LP   YQI  
Sbjct: 83  GKESQHIRGFEKEVFWVSKGGEGGERLVLRPTSETAIMPMVKLWIQDYKDLPLRLYQIVS 142

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +    ++R RE  M                                        
Sbjct: 143 VFRAETKMTHPMIRLREISM---------------------------------------- 162

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                    +H   V  +  E QV          +      FD++     I ++      
Sbjct: 163 ------FKEAHTVHVDREDAERQV-------REAVEIYKRIFDEMCLAYMINKRPDWDKF 209

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A ++                  R +++G   Y GT ++     T+  ADG        SY
Sbjct: 210 AGAEYTIAFD------TVLPDGRTLQIGTAHYLGTNFTRVFEVTYLDADGTRKLAHTTSY 263

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK 374
           GI + R +AA++ +  D  G   P  +AP +I+++ I   D+         E++ A L  
Sbjct: 264 GI-SERSIAAMLITHGDDGGTTLPPKLAPIQIAVVPIYYSDEEMPLVMKFVEEVVAALKG 322

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  +  DD   +  G +F   +L G PL++ VG + V   +V +  R T  +  ++L E
Sbjct: 323 AGLRLHVDDRRDKTPGWKFYYWELKGVPLRLEVGKRDVEKRQVVVTRRDTLEKYAVALGE 382

Query: 434 VINYASHRFS 443
           +++       
Sbjct: 383 LVDAVRELMK 392


>gi|254778944|ref|YP_003057049.1| prolyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254000855|emb|CAX28787.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) (Global RNA
           synthesis factor) [Helicobacter pylori B38]
          Length = 577

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 84/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDCCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LGAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +I+G + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|188527045|ref|YP_001909732.1| prolyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|226701297|sp|B2US70|SYP_HELPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188143285|gb|ACD47702.1| prolyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 577

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 86/181 (47%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPDCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLKS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|194210848|ref|XP_001916146.1| PREDICTED: similar to threonyl-tRNA synthetase 2, mitochondrial
           [Equus caballus]
          Length = 667

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 145/438 (33%), Gaps = 57/438 (13%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
                H+ S G   +LP G +  + + A IR E +R G  E+  PTL S  LW  SG ++
Sbjct: 260 ELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYSRRGFSEVKTPTLFSTKLWELSGHWE 319

Query: 88  SYGKEMLRL----------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            Y ++M  L                       +   P +      +F    +S+R LP  
Sbjct: 320 HYQEDMFALQPPGSDRPTGSQSDHSTSHPTDTLALKPMNCPAHCLMFAHRPRSWRELPLR 379

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                L  R E+     G+ R R F   DA+ F   P+  +            I+  LG 
Sbjct: 380 LADFGL-HRAEVSGSLGGLTRLRRFQQDDAHIFCA-PDQLEAEIRGCLDFLRSIYAVLGF 437

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P G          A+    Q            P +               
Sbjct: 438 SFR-LALSTRPSGFLGEPCLWDQAEQVLQQALEEFGEPWDLNPGDG-------------- 482

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-D 309
                 A      +  L D+L  + +     ++    F    ++       +KG  G  +
Sbjct: 483 ------AFYGPKIDVHLHDALGRSHQCGTIQLD----FQLPLRF----DLQYKGQAGALE 528

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H V +    +G++  +  ++  S  GK   WP  ++PF++ +I +    +       +  
Sbjct: 529 HPVLIHRAVLGSVERMLGMLAESCGGK---WPLWLSPFQVVVIPVGTEQEG---YAREAQ 582

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G     D D G  +  +   A L  +  Q +VG K  S   V I+ R      +
Sbjct: 583 RSLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSKRTVNIRTRDNRRLGE 642

Query: 429 MSLEEVINYASHRFSNNR 446
             L E +        N R
Sbjct: 643 WDLTEAVQRLLE-LQNTR 659


>gi|322388633|ref|ZP_08062233.1| proline--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140553|gb|EFX36058.1| proline--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 617

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKMGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVAGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGV--LNFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I   L   G +V  DD  E++G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEASLALTDRIEEALVNKGYEVLTDDRNERVGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 572 IGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADSLLETLE 612


>gi|260942551|ref|XP_002615574.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850864|gb|EEQ40328.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 453

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 148/455 (32%), Gaps = 65/455 (14%)

Query: 14  NPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              +  I++ +L+     I    + G   +LP G +  + +   ++ +Q + G  E+  P
Sbjct: 26  TQANHAISNKQLL----YITDPVTPGSIFFLPHGTRIFNKLVHFMKNQQLKYGFQEVITP 81

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--------ADRND---KAMIYGPTHEEVMTDIFRSH 121
            +    LW  SG +D+Y  +M ++         D  +         P +      IF   
Sbjct: 82  LIYKTKLWEVSGHWDNYKDDMFKVIGNDLTKEKDSEEAHLHEYGLKPMNCPGHCLIFSKF 141

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY  LP          R+E      G+ R R F   D + F    +            
Sbjct: 142 ERSYNELPIRLSDFSSLHRNEASGALSGLTRVRRFHQDDGHIF-CEMDQIHQEITNTINL 200

Query: 181 YLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               ++  G+     +     + P                  + F           S+  
Sbjct: 201 IKDTYNVFGIDSTKDVDFFLSTRP------------------EKFIGDAQTWDEAESQLA 242

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D  +  +         A      +  L D+  +  +V    ++    F    ++ L 
Sbjct: 243 SVLDTTAGKNKWSIREGDGAFYGPKIDILLTDAFNKKHQVGTIQLD----FQLPARFELK 298

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             +     D     + +     G++    A++   + GK   WP  + P +  +I +   
Sbjct: 299 YISRNGDRDN--QPIMIHRAVFGSLERFFAILLDHYQGK---WPFWINPRQAIIIPV--- 350

Query: 358 DQVCRDACEKIYARL--------------SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
                +A EK+  +L              +     V  D   E +G++   A   G+   
Sbjct: 351 SDKHHEAAEKLQKQLVGDIVNSESSIAPMTGYNFFVDVDRRSETVGNRIKDAVKKGYSYI 410

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           ++VG K + +  V I+ R +   E+ ++EE+    
Sbjct: 411 LMVGDKDIENGTVAIRSRDSRKVENKTVEEIYEKF 445


>gi|308061592|gb|ADO03480.1| prolyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 577

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPDCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    +  +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKRTLKDTELEEKILEMLKS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|317179366|dbj|BAJ57154.1| prolyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 577

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 131/231 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW  SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWERSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLVLIVGKQTLESKEFECIKRANLEKQVLKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|47226601|emb|CAG08617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 677

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 137/410 (33%), Gaps = 46/410 (11%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H  S G   +LP G    + +   IR E  
Sbjct: 297 KMLKEWEKFQEEAKNRDHRKLGREQELFFFHDLSPGSCFFLPKGAFIYNTLIEFIRSEYR 356

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P + ++ LW  SG +  Y + M        +     P +      +F    
Sbjct: 357 RRGFQEVVSPNIYNSKLWQTSGHWQHYSENMFSFESEK-ETFALKPMNCPGHCLMFDHRP 415

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F  + +  +          
Sbjct: 416 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CSMDQIEGEIKGCLDFL 474

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G     +   + P       +    A+                 P +      
Sbjct: 475 RTVYNVFGFTF-KLNLSTRPEKFLGDPDVWDQAEKQLENSLNEFGEKWVLNPGDG----- 528

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 529 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTF--V 567

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK------GIIWPDSVAPFKISLINIK 355
               D K+  V +    +G++  + A++  +  GK      G   P  ++P ++ ++ + 
Sbjct: 568 GHDGDDKNRPVIIHRAILGSVERMIAILTENFGGKWWAVSEGTRRPLWLSPTQVMIVPVG 627

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
                C +  +K+       G     D D G  +  +   A L  +   +
Sbjct: 628 P---TCEEYAQKVRQDFHSSGFMTDVDLDPGCTLNKKIRNAQLAQYNFIL 674


>gi|328774228|gb|EGF84265.1| hypothetical protein BATDEDRAFT_8061 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 154/441 (34%), Gaps = 56/441 (12%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++A    H+L+ +          S G   +LP G + +  +   +R E  + G  E+  P
Sbjct: 161 QEASKRDHRLIGQKQSLFYFSPLSLGAPFFLPHGTRIIQRLTDFLRHEYRKYGFDEIVTP 220

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            + +  LW +SG + +Y +++  +   ND       P +      +F S  +SYR+LP  
Sbjct: 221 LVFNKSLWEKSGHWKNYKEDI-TVDQLNDADIQALKPMNCPGHCLLFSSTSRSYRDLPIR 279

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LG 189
           + +     R+E      G+ R R+F   D + F  TP                ++ + L 
Sbjct: 280 YAEFSPLHRNEASGALTGLTRVRKFHQDDGHIF-CTPSQIAQEIQSTLKFIDTMYTKILH 338

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P  G +    +   +  ET +  +      P                  
Sbjct: 339 FPQYTLALSTRPESGHVGT--LTQWEAAETALKEALTQFGKP-----------------W 379

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-- 307
                  A      + K+ D++  + + +   ++      F  +YS        G  G  
Sbjct: 380 TINHGDGAFYGPKIDIKVRDAIGRDHQTATVQLDFQLPKQFQLQYS-------TGKTGPE 432

Query: 308 ---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
               +  V +    +G++  + A++   + GK   WP  ++P +  +I          + 
Sbjct: 433 DAAMETPVMIHRAVLGSVERMLAILAEHYGGK---WPFWMSPRQAIVIPTNK---TLNEY 486

Query: 365 CEKIYARLSK-----------VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            + +   ++                +  DD    +  +   A LL F   ++VG K    
Sbjct: 487 AQSVKNNIANPSELDGSNSCSAYYHIEVDDSDHLLSKRVREAQLLQFNYILVVGDKEQET 546

Query: 414 SKVEIKHRLTGIREDMSLEEV 434
             V ++ R       M+++++
Sbjct: 547 GTVNVRSRTGKQLGLMTVDQL 567


>gi|281425750|ref|ZP_06256663.1| proline--tRNA ligase [Prevotella oris F0302]
 gi|281400158|gb|EFB30989.1| proline--tRNA ligase [Prevotella oris F0302]
          Length = 493

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/466 (18%), Positives = 171/466 (36%), Gaps = 88/466 (18%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L++  + AE  S     L+++  +  Q   +G     P G    + + A + +E  +TG 
Sbjct: 5   LKQLTKRAENYSQWYNDLVVKAELAEQSPVRGCMVIKPYGYAIWEKMQAQLDKEFKKTGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEM-----LRLADRND-------------KAMIYG 107
                P L        E+     + KE       RL    +             + +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKSSEEGNSVVVDPSAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + ++  I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKGWIHSWRDLPIMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATR 183

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++    KM                 + A+                       F  K  
Sbjct: 184 EEAEVEAQKML---------------KVYAD-----------------------FAEKWM 205

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               +    ++ +                                       + ++ G  
Sbjct: 206 AVPVLQGVKSETERFAGALDTYTIEAM---------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     TF   + K  YV   S+G+ + R++ A+I    D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLMGALIMVHSDDNGLVLPPKLAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++ ++ I   D   +    K+     +L ++G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVVIVPIYKGDDQLKAISNKLQPVINKLEELGISVKYDDSDNKRPGFKFADYELKGIPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++G + + ++ +EI  R T  +E +S + ++        + +  L
Sbjct: 364 LVMGGRDLENNTIEIMRRDTLEKESVSFDGIVERVKTLLDDIQANL 409


>gi|327356150|gb|EGE85007.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 770

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 154/466 (33%), Gaps = 36/466 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 315 KQMQEHLKFLEE----AEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQKLLR 370

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 371 SEYLKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMF 429

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +      + +
Sbjct: 430 GHKERSYRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQIMKEIDGL 488

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ +   + 
Sbjct: 489 FDFLRAIYGLFGFSF-KLKLSTRPEKYMGKIETWNYAEDQLRAALTKFKGNDWEVEEGDG 547

Query: 238 DFD---------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            F          D +            Y    +   E +        + + +  E     
Sbjct: 548 AFYGPKIDITIQDALKREFQCATIQLDYQMPVNFKLEYMTGETGAKAKPTEKPAE-NPDE 606

Query: 289 YFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 + P  A    +D    G+   V +    IG+      +I     GK   WP  +
Sbjct: 607 KPAGDAAKP-DAPPTNSDEPGPGRARPVVIHRAIIGSFERFFGIIIEHFGGK---WPFWL 662

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P +I ++ +        D  E++   L     +V  D  G  +  +     +  +    
Sbjct: 663 SPRQILIVPVMP---AINDYVEELQQILKGDKLNVDIDISGNTMQKKIRTGQIAQYNFIF 719

Query: 405 IVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           +VG++  S   V I++R     +     + LEE            R
Sbjct: 720 VVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARVKLRALRKERR 765


>gi|71019463|ref|XP_759962.1| hypothetical protein UM03815.1 [Ustilago maydis 521]
 gi|46099508|gb|EAK84741.1| hypothetical protein UM03815.1 [Ustilago maydis 521]
          Length = 536

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/457 (17%), Positives = 146/457 (31%), Gaps = 81/457 (17%)

Query: 22  SHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
            H+ + +     + H+ S G    LP G +    V  ++R+  +  G  E+  P L    
Sbjct: 65  DHRSIGKAQTLFLTHESSPGTPFILPHGMRLARKVERVVRDLYDVYGYDEVQSPQLYKTS 124

Query: 79  LWVESGRYDSYGKEML-----------RLADRN---------------------DKAMIY 106
           LW  SG +D+Y  +M             + DR                      D++   
Sbjct: 125 LWKRSGHWDNYRDDMFAAEGYKERFSSSIDDRRTSCCSIHPPTSATEATAANAEDESFGL 184

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDL 165
            P +      IF S  +SYR+LP  + +     R+E      G+ R R F   DA+ F  
Sbjct: 185 KPMNCPGHCLIFGSSERSYRDLPIRYAEFSPLHRNEASGALTGLTRVRRFHQDDAHVF-C 243

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            P+      N M       +   G     +   + P     S E    A+ G  Q   + 
Sbjct: 244 RPDQVAVEINSMLSMLTSAYDTFGFSDFELVLSTRPESFIGSVEEWDRAEAGLRQALDAS 303

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                    +                     A      +  L D      + +   ++  
Sbjct: 304 GRKWEMNAGDG--------------------AFYGPKIDIHLVDGQGRRHQTATIQLDFQ 343

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               F   Y+ P +A       +   V +    +G++    A++     G    WP  ++
Sbjct: 344 LPRRFDLSYADP-AAKQTNE--RSVPVMIHRAILGSVERFMAILIEQTAGW---WPFWLS 397

Query: 346 PFKISLINIKAHDQVCRDACEKIYA------------------RLSKVGCDVFWDDMGEQ 387
           P +  +I    ++    +  EK++                    L +   DV  +   E+
Sbjct: 398 PRQAIIIPATTNNPALTEYVEKLHKFLSLGIHPDAPPSSSSERHLQRFFVDVESNPQNEK 457

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +G     A L  +   ++VG K +  + + ++ R   
Sbjct: 458 LGKLVRKAQLARYNYILVVGEKEMHTNTINVRKRDDK 494


>gi|322374996|ref|ZP_08049510.1| proline--tRNA ligase [Streptococcus sp. C300]
 gi|321280496|gb|EFX57535.1| proline--tRNA ligase [Streptococcus sp. C300]
          Length = 617

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     G+ +P  +APF + LI +   D+  +   +K+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTDKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|294941858|ref|XP_002783275.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239895690|gb|EER15071.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 908

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/466 (16%), Positives = 146/466 (31%), Gaps = 80/466 (17%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
            +L+E  R   +A    H+L+ +       H   S G   W   G    + +   IR E 
Sbjct: 332 KMLKEYKRNVEEAMKRDHRLIGKKQDLFFFHPTMSPGSCFWTSHGAVIYNKLVDFIRREY 391

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + S  L+ +SG   +Y   M    +   +     P +      IF   
Sbjct: 392 RLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS-MNIEGETWFLKPMNCPGHCMIFDQK 450

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP       +  R+EL     G+ R R F   DA+ F   P+  +         
Sbjct: 451 VRSYKELPIRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CRPDQVQDEIVHALEF 509

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +++  G     +   + P     S      A++G      +        P +     
Sbjct: 510 LKFVYNTFGFDF-SVCLSTRPKKAIGSRAIWDTAESGLKNALEACGIDYDLNPGDG---- 564

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY------ 294
                           A      + +L D+L    +     ++      F  +Y      
Sbjct: 565 ----------------AFYGPKIDIRLRDALNRYHQCGTIQLDFNLPIRFNLQYRIAETE 608

Query: 295 --------SLPMSATFKGAD-----------------------------GKDHYVQMGSY 317
                   S   ++                                   G +  V +   
Sbjct: 609 ESGDAHAASEAANSPVNDQQKGSTQSSAAVENVGSKAKADEITLGELRHGFERPVMIHRA 668

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++    A++     GK   WP  ++P ++ ++ +        D  + +  +L ++G 
Sbjct: 669 ILGSIERCTAILTEHFGGK---WPFWLSPRQVMVVPV---SDKYSDYADYVRKQLVRLGY 722

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +   D     +  +   A +  F    +VG K  +D  V ++ R T
Sbjct: 723 EADADLSTRTMNKKVREAQVAAFNYIAVVGEKEQNDLTVTLRKRDT 768


>gi|308182413|ref|YP_003926540.1| prolyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308064598|gb|ADO06490.1| prolyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 577

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAA 231



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDCCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|208434185|ref|YP_002265851.1| prolyl-tRNA synthetase [Helicobacter pylori G27]
 gi|226701296|sp|B5ZA05|SYP_HELPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|208432114|gb|ACI26985.1| prolyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 577

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAA 231



 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 86/181 (47%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+        ++
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQALESKEFECIKRANLEKQTLKDTELEEKILEMLAS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|118471368|ref|YP_887250.1| threonyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|166225464|sp|A0QWG2|SYT_MYCS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118172655|gb|ABK73551.1| threonyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 684

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 140/451 (31%), Gaps = 51/451 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 254 IEEAQRRDHRKLGVELDLFS-FPDELGSGLPVFHPRGGVVRRELEDYSRRKHLEAGYEFV 312

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHEEVMTDI 117
           + P +    L+V SG  + Y   M      + +                 P +  +   I
Sbjct: 313 NTPHITKEQLYVTSGHLEWYADGMFPAMHIDAEYDADGQVRKPGQNYYLKPMNCPMHHLI 372

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FRS  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +    +
Sbjct: 373 FRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-TTREQMRDELTR 431

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S E    A     +V  +      P P  
Sbjct: 432 LLEFVLSLLKDYGLDDYYLELSTKDPEKYVGSDEIWEEATETLREVAEASGLDLVPDPG- 490

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L  + ++S   ++            
Sbjct: 491 -------------------GAAFYGPKISVQVKDALGRSWQMSTIQLDFNMPDR------ 525

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG +   V +     G++     V+   + G    W   +AP ++  I +
Sbjct: 526 --FELEYTAADGSRRRPVLIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIPV 580

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++ A+L   G  V  D   +++  +      +  P  ++ G K     
Sbjct: 581 A---DAHTPYLEEVAAQLKSRGVRVEVDSSDDRMAKKIVNHTNMKVPFMLLAGDKDAEAG 637

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  +         +  +E +       ++ 
Sbjct: 638 AVSFRFGDRTQINGVPRDEAVEMIVRWIADR 668


>gi|332673080|gb|AEE69897.1| proline--tRNA ligase [Helicobacter pylori 83]
          Length = 577

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRVVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 84/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 EAHFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|312867906|ref|ZP_07728110.1| proline--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311096310|gb|EFQ54550.1| proline--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 616

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 100/216 (46%), Positives = 139/216 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRYD+YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYDTYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           Y RIF R GL    +  + G +GG  S EF+ +  T
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPT 216



 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+       +I   L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEASLALTNRIEEALVNKGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + G +F+ +DL+G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 561 RAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|207108695|ref|ZP_03242857.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 254

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCQNCDYAA 231


>gi|172040605|ref|YP_001800319.1| threonyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|171851909|emb|CAQ04885.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 662

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 144/456 (31%), Gaps = 52/456 (11%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E   RD      +L L +    +   G   + P G      +    R     +G
Sbjct: 229 YQHMLEEAEKRDHRRLGAELDLFS-FPDEVGSGFPVFHPNGGIVRLEMEEHSRRRHLASG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTHEEV 113
              ++ P +   DL+ +SG  D Y + M          D         +     P +  +
Sbjct: 288 YSFVNTPHITKGDLFQKSGHLDFYAEGMFPPMQLDGETDEEGNVTKPGQDYYAKPMNCPM 347

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 348 HNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTEDQLED 406

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    + +    GL    +   +  P     + E    +     +V         P
Sbjct: 407 ELTTVLEFIISLLRDYGLDDFYLELSTKDPKKFVGTDEIWERSTEILQRVAEKSGLELVP 466

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P+                      A      + +  D++    ++S   ++    F   
Sbjct: 467 DPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLP 502

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +   DG K   + +     G++     V+   + G    W   +AP ++ 
Sbjct: 503 ERF----DLEYTAPDGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVM 555

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +    +   +  E+  A L K G     D   +++  +         P  ++VG + 
Sbjct: 556 GIPVA---EDFTEYLEEFVADLRKDGIRAEVDTSDDRMQKKIRTHTKGKIPFMLLVGGRD 612

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V +  V  +         +  EE            R
Sbjct: 613 VENGAVSFRFHDGTQVNGVPREEAAKAIKEWIGQRR 648


>gi|255066457|ref|ZP_05318312.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049337|gb|EET44801.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 322

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 127/356 (35%), Gaps = 43/356 (12%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M  +     +     P +      IF + ++SYR+LP    +     R+E      G+MR
Sbjct: 1   MF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMR 59

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F+  DA+ F  T +             +RI+ + G   + ++    P     S +  
Sbjct: 60  VRGFVQDDAHIF-CTEDQIVSEARAFNELLVRIYKQFGFHDVSVKLSLRPEKRAGSDDVW 118

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+ G  +   +       +P E   +   I                            
Sbjct: 119 DKAEQGLREALTACGVEWDELPGEGAFYGPKIEY-------------------------- 152

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
              K    R  + G        + LP  + A +   +  +   V +    +G++     +
Sbjct: 153 -HVKDALGRSWQCGT---LQLDFVLPERLDAEYVTENNDRARPVMLHRAILGSLERFIGI 208

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +  +H G   +W   +AP ++ ++NI    +   D C ++ A+L   G  V  D   E+I
Sbjct: 209 LIENHAGSFPLW---LAPVQMVIMNIT---ENQADYCREVAAKLQAAGFRVELDLRNEKI 262

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +        FP Q++VG K   ++KV ++ R       + L++ I       ++
Sbjct: 263 GYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKAEDLGSLDLDDFIAQLQQEIAD 317


>gi|82753545|ref|XP_727721.1| threonyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483702|gb|EAA19286.1| threonyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 930

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 154/455 (33%), Gaps = 32/455 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD       L L      + S G   W   G K  + +   +R+E       E+
Sbjct: 470 IEEAKKRDHRNVGKNLNLF-FFEKETSPGSGFWFSHGAKIYNKLIEFMRKEYRIRKYDEV 528

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + S DLW  SG Y +Y   M    +  +K     P +      IF+    SY++LP
Sbjct: 529 ITPNIFSCDLWKTSGHYQNYKNCMFIF-NIENKEWGMKPMNCPGHCLIFKQLNASYKSLP 587

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E+     G+ R R F   DA+ F  + +  K     +      +++  
Sbjct: 588 IRLADFGVLHRNEITGSLSGLTRVRRFQQDDAHIF-CSLDHIKTEVVNVLQFIFFVYNLF 646

Query: 189 GLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           G K   +   + P   IG   + +F   +     ++   K  ++    +      DI+  
Sbjct: 647 GFKY-DLYLSTRPPKYIGDIETWDFAEKSLKEALELANVKWKLNEGDGAFYGPKIDIVLR 705

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK-YSLPMSATFKG 304
           +S+                 +        +    +  +   +    T        +T + 
Sbjct: 706 DSLNRSHQCGTVQLDFQLPIRFNLQYKNKEYGVGQETDSNLVNNSNTDVIEKKEDSTLEN 765

Query: 305 ADGKD----------------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            D                     + +    +G++    A++     GK   W   ++P +
Sbjct: 766 IDNNQDPINNQPGGVLKKGFDRPIIIHRAILGSVERFVAILVEHTSGKFPFW---LSPRQ 822

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             ++ I        +  + I+  L+    DV  D     +  +   A L  +   ++VG 
Sbjct: 823 AIVLPI---SDKFNEYAKYIHTVLTNNLFDVDVDISVNTLNKKIREAQLKQYNFILVVGE 879

Query: 409 KFVSDSKVEIKHRLT-GIREDMSLEEVINYASHRF 442
           K +S + V ++ R     ++  +++E++N      
Sbjct: 880 KEISTNTVTVRDRDNPNDQKVYTVQELVNTFKKML 914


>gi|227827828|ref|YP_002829608.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|229585098|ref|YP_002843600.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259511620|sp|C3N6D0|SYP_SULIA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511623|sp|C3MW88|SYP_SULIM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227459624|gb|ACP38310.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|228020148|gb|ACP55555.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 481

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 173/439 (39%), Gaps = 76/439 (17%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLS 78

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +     
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAIP---- 194

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           VL++  E   F                                 
Sbjct: 195 ---------------YVLSERPEWDRFAGALHTYA------------------------- 214

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                       FD++  + +V     ++G + + G  +S  +    +  DG   Y    
Sbjct: 215 ------------FDTIMPDGKVM----QIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQT 258

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYAR 371
           SYGI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   
Sbjct: 259 SYGI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSVEICEM 317

Query: 372 LSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       + 
Sbjct: 318 LNKNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVK 377

Query: 431 LEEVINYASHRFSNNRPVL 449
            EEV+N      +  +  L
Sbjct: 378 KEEVVNKVKEVLNEIQEDL 396


>gi|331267089|ref|YP_004326719.1| prolyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683761|emb|CBZ01379.1| prolyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 617

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     G+ +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|73919785|sp|Q8NPZ0|SYT_CORGL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 695

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 143/455 (31%), Gaps = 52/455 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +        G+  + P G    + +    R      G
Sbjct: 263 YQTMLAEAEKRDHRRLGTELDLFS-FPDDLGSGLPVFHPNGGIVRNEMEDHSRRRHIAAG 321

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTHEEV 113
              ++ P +   DL+  SG    Y   M          D +       +     P +  +
Sbjct: 322 YSFVNTPHITKQDLFERSGHLGFYKDGMFPPMQVDAEFDEDGNVTKPGQEYYLKPMNCPM 381

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 382 HNLIFDSRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQLEA 440

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    +     +V  +      P
Sbjct: 441 ELTSVLDFILSLLRDYGLDDFYLELSTRDPKKSVGSDEIWERSTEILNRVATNSGLELVP 500

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++        
Sbjct: 501 DPE--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLDFNMPER-- 538

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                  +  +  +DG K   + +     G++     V+   + G    W   +AP ++ 
Sbjct: 539 ------FNLEYTSSDGSKQQPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVM 589

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +      C    E I A+L + G     D   +++  +         P  ++ G++ 
Sbjct: 590 GIPVADD---CIPHLETITAQLREKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARD 646

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + V  +         + ++E I   S    + 
Sbjct: 647 VEANAVSFRFLDGTQVNGVPVDEAIAVISSWIGDR 681


>gi|62390552|ref|YP_225954.1| threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41325890|emb|CAF20053.1| THREONYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032]
          Length = 700

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 143/455 (31%), Gaps = 52/455 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +        G+  + P G    + +    R      G
Sbjct: 268 YQTMLAEAEKRDHRRLGTELDLFS-FPDDLGSGLPVFHPNGGIVRNEMEDHSRRRHIAAG 326

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTHEEV 113
              ++ P +   DL+  SG    Y   M          D +       +     P +  +
Sbjct: 327 YSFVNTPHITKQDLFERSGHLGFYKDGMFPPMQVDAEFDEDGNVTKPGQEYYLKPMNCPM 386

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 387 HNLIFDSRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQLEA 445

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    +     +V  +      P
Sbjct: 446 ELTSVLDFILSLLRDYGLDDFYLELSTRDPKKSVGSDEIWERSTEILNRVATNSGLELVP 505

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++        
Sbjct: 506 DPE--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLDFNMPER-- 543

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                  +  +  +DG K   + +     G++     V+   + G    W   +AP ++ 
Sbjct: 544 ------FNLEYTSSDGSKQQPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVM 594

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +      C    E I A+L + G     D   +++  +         P  ++ G++ 
Sbjct: 595 GIPVADD---CIPHLETITAQLREKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARD 651

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + V  +         + ++E I   S    + 
Sbjct: 652 VEANAVSFRFLDGTQVNGVPVDEAIAVISSWIGDR 686


>gi|307636931|gb|ADN79381.1| prolyl tRNA synthetase [Helicobacter pylori 908]
 gi|325995521|gb|ADZ50926.1| Prolyl-tRNA synthetase [Helicobacter pylori 2018]
 gi|325997119|gb|ADZ49327.1| Prolyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 577

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAA 231



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 87/181 (48%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G DV  DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDVLLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +I+G + +   + E   R    ++ +   E+        ++
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEKILEMLAS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|15644866|ref|NP_207036.1| prolyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|2501038|sp|P56124|SYP_HELPY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2313329|gb|AAD07305.1| prolyl-tRNA synthetase (proS) [Helicobacter pylori 26695]
          Length = 577

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAA 231



 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +I+G + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|210134438|ref|YP_002300877.1| prolyl-tRNA synthetase [Helicobacter pylori P12]
 gi|226701295|sp|B6JKG9|SYP_HELP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|210132406|gb|ACJ07397.1| prolyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 577

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAA 231



 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 87/181 (48%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDRCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+        ++
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEKILEMLAS 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|119872334|ref|YP_930341.1| prolyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|152112945|sp|A1RSR6|SYP_PYRIL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119673742|gb|ABL87998.1| prolyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 488

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/430 (20%), Positives = 157/430 (36%), Gaps = 69/430 (16%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H L+    +  +    KG Y W P G K   NV  +IR   + TG  E+  P     + +
Sbjct: 24  HWLLREAELYDVRYPVKGAYVWRPYGMKLRRNVENLIRRIHDETGHEEVLFPVFIPYEFF 83

Query: 81  -VESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             ES     + KE+  ++      + +I  PT E  +  + +  I+ Y++LP   YQI  
Sbjct: 84  SKESQHIRGFEKEVFWVSKGGEGGERLILRPTSETAIMPMVKLWIQDYKDLPLRLYQIVS 143

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +    ++R RE  M                                        
Sbjct: 144 VFRAETKMTHPMIRLREISM---------------------------------------- 163

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                    +H      +  E Q+          +      FD++     I ++      
Sbjct: 164 ------FKEAHTVHATREDAERQI-------REAVEIYKRIFDEMCLAYMINKRPNWDKF 210

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A ++                  R +++G + Y G  ++     T+   DG        SY
Sbjct: 211 AGAEYTIAFD------TILPDGRTLQIGTVHYLGVNFTKVFEVTYLDIDGTRKLAHTTSY 264

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK 374
           GI + R +AA++ +  D  G   P  +AP ++ ++ I   ++         +++Y  L  
Sbjct: 265 GI-SERSIAAMLITHGDDGGTTLPPKLAPIQVVIVPIFYGEEEMPTVMKFVDEVYRMLRD 323

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           VG  +  DD   +  G +F   +L G PL++ VG + +   +V +  R T  +  +SL E
Sbjct: 324 VGIRIHIDDRRDKTPGWKFYYWELKGVPLRIEVGRRDIEKRQVVVTRRDTLEKYAVSLGE 383

Query: 434 VINYASHRFS 443
           +++      S
Sbjct: 384 LVDAVKQLMS 393


>gi|111023830|ref|YP_706802.1| threonyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|123339593|sp|Q0S1E2|SYT_RHOSR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110823360|gb|ABG98644.1| threonine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 685

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 139/452 (30%), Gaps = 57/452 (12%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   ++ 
Sbjct: 257 EAERRDHRKLGSELDLFS-FPDELGSGLPVFHPRGGIIRTEMEDYSRKRHVEEGYEFVNT 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M      +++                 P +  +   IFR
Sbjct: 316 PHITKGHLYEVSGHLDWYRDGMFPAMHIDEELNEDGTVRKPGQDYYLKPMNCPMHNLIFR 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +       
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CTREQMRDELATTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              L +    GL    +   +      +G D   E    A     +V  S      P P 
Sbjct: 435 QFVLGLLKDYGLDDFYLELSTKNPDKFVGDDAVWE---EATATLAEVAESSGLNLVPDPG 491

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + ++ D+L    ++S   ++    F    ++
Sbjct: 492 --------------------GAAFYGPKISVQVQDALGRTWQMSTIQLD----FNLPERF 527

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +   DG K   V +     G++     V+   + G    W   +AP ++  I 
Sbjct: 528 ----DLEYTANDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIP 580

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +   D    +  RL   G     D   +++  +         P  ++ G++ V  
Sbjct: 581 VA---ETFADHLFDVVKRLKAAGVRAEVDASDDRMQKKIFNNTAQKVPFMLLAGARDVEA 637

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V  + R       + +++ +   +      
Sbjct: 638 GAVSFRFRDGTQVNGVPVDDAVRIVTEWIGRR 669


>gi|149179156|ref|ZP_01857725.1| prolyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148842016|gb|EDL56410.1| prolyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 584

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 110/228 (48%), Positives = 150/228 (65%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   +P ++E P DAEI SH+LMLR G+I Q   G Y++LPLG KA+     I+REE
Sbjct: 1   MRWSNTLIPTIKEVPADAEIPSHQLMLRAGLIRQLMAGAYTYLPLGWKAIQKAAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDK--AMIYGPTHEEVMTDI 117
            +  GA E+ +P LQ   L+  + R +++G  +++    R ++   M  GPTHEEV+TD+
Sbjct: 61  MDAAGAAELHMPALQPIGLFERTQRKEAFGSVLIQFNVPRGNRQIPMALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP T YQIQ KFR+E RPRFGV+R+ EFLMKDAYSF  + +     Y++M
Sbjct: 121 ISHCISSYKQLPLTVYQIQTKFRNEERPRFGVLRTSEFLMKDAYSFSSSVKQLDEIYDRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           + +Y RIF R GLK +P+ AESGPIGGD SHEF++ AD GE  +   +
Sbjct: 181 YRAYCRIFARCGLKYLPVEAESGPIGGDASHEFMIPADNGEDSIVYCE 228



 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 2/190 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+ N +  D  P++        GIEVGH+F  GTKY+  + A F     K H + MG Y
Sbjct: 385 FDLRNAEAGDPCPKSGEPLTIVHGIEVGHVFKLGTKYTEALDANFLDEKEKRHPIIMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+VA + E+ HD  G+IWP S+AP+++ +I +   D       E+ Y  L   G 
Sbjct: 445 GIGVNRIVAGLAETRHDENGLIWPLSIAPYEVLVIPLNVKDDEVMQTAERYYNELKAAGV 504

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV +DD   + G +F  ADL+G P +V++G K +   ++E K R     E ++L+  I  
Sbjct: 505 DVLFDDRNARPGVKFKDADLIGIPYRVVIGGKGLQKGEIETKWRTAENAEMIALDAGIRP 564

Query: 438 ASHRFSNNRP 447
                 + + 
Sbjct: 565 VLEALESRKA 574


>gi|308184043|ref|YP_003928176.1| prolyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308059963|gb|ADO01859.1| prolyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 577

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAA 231



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 86/181 (47%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDTLLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +I+G + + + + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTIKDIELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|19552881|ref|NP_600883.1| threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|21324440|dbj|BAB99064.1| Threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
          Length = 686

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 143/455 (31%), Gaps = 52/455 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +        G+  + P G    + +    R      G
Sbjct: 254 YQTMLAEAEKRDHRRLGTELDLFS-FPDDLGSGLPVFHPNGGIVRNEMEDHSRRRHIAAG 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTHEEV 113
              ++ P +   DL+  SG    Y   M          D +       +     P +  +
Sbjct: 313 YSFVNTPHITKQDLFERSGHLGFYKDGMFPPMQVDAEFDEDGNVTKPGQEYYLKPMNCPM 372

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 373 HNLIFDSRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQLEA 431

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    +     +V  +      P
Sbjct: 432 ELTSVLDFILSLLRDYGLDDFYLELSTRDPKKSVGSDEIWERSTEILNRVATNSGLELVP 491

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++        
Sbjct: 492 DPE--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLDFNMPER-- 529

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                  +  +  +DG K   + +     G++     V+   + G    W   +AP ++ 
Sbjct: 530 ------FNLEYTSSDGSKQQPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVM 580

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +      C    E I A+L + G     D   +++  +         P  ++ G++ 
Sbjct: 581 GIPVADD---CIPHLETITAQLREKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARD 637

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + V  +         + ++E I   S    + 
Sbjct: 638 VEANAVSFRFLDGTQVNGVPVDEAIAVISSWIGDR 672


>gi|317181547|dbj|BAJ59331.1| prolyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 577

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 133/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     ++    +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLDKEFSNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNCDYAA 231



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 86/181 (47%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDRCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|125625170|ref|YP_001033653.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|152112925|sp|A2RNT2|SYP_LACLM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124493978|emb|CAL98976.1| ProS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071979|gb|ADJ61379.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 616

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 99/215 (46%), Positives = 142/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYETYGEDLYKLKNRDSSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +Y     +
Sbjct: 121 EITSYKKLPLNVYQIATKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYLDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGIVEVKIRATGEVVEIN 603

Query: 431 LEEVINYAS 439
            +E++N   
Sbjct: 604 KDELVNTIE 612


>gi|306828825|ref|ZP_07462017.1| proline--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304429003|gb|EFM32091.1| proline--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 617

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     G+ +P  +APF + LI + A D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGVNFPKELAPFDVHLITVNAKDEEAQALTEKLEANLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|293364306|ref|ZP_06611032.1| proline--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307702728|ref|ZP_07639680.1| prolyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291317152|gb|EFE57579.1| proline--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623844|gb|EFO02829.1| prolyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 617

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     G+ +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQTLTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +IG +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++ ++ ++    
Sbjct: 561 RIGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHVDNLLETLE 612


>gi|145295791|ref|YP_001138612.1| threonyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|140845711|dbj|BAF54710.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 686

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 143/455 (31%), Gaps = 52/455 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +        G+  + P G    + +    R      G
Sbjct: 254 YQTMLAEAEKRDHRRLGTELDLFS-FPDDLGSGLPVFHPNGGIVRNEMEDHSRRRHIAAG 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTHEEV 113
              ++ P +   DL+  SG    Y   M          D +       +     P +  +
Sbjct: 313 YSFVNTPHITKQDLFERSGHLGFYKDGMFPPMQVDAEFDEDGNVTKPGQEYYLKPMNCPM 372

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 373 HNLIFDSRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQLEA 431

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L +    GL    +   +  P     S E    +     +V  +      P
Sbjct: 432 ELTSVLDFILSLLRDYGLDDFYLELSTRDPKKSVGSDEIWERSTEILNRVATNSGLELVP 491

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++        
Sbjct: 492 DPE--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLDFNMPER-- 529

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                  +  +  +DG K   + +     G++     V+   + G    W   +AP ++ 
Sbjct: 530 ------FNLEYTSSDGSKQQPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVM 580

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +      C    E I A+L + G     D   +++  +         P  ++ G++ 
Sbjct: 581 GIPVADD---CIPHLETITAQLREKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARD 637

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + V  +         + ++E I   S    + 
Sbjct: 638 VEANAVSFRFLDGTQVNGVPVDEAIAVISSWIGDR 672


>gi|255714212|ref|XP_002553388.1| KLTH0D15620p [Lachancea thermotolerans]
 gi|238934768|emb|CAR22950.1| KLTH0D15620p [Lachancea thermotolerans]
          Length = 453

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 160/441 (36%), Gaps = 51/441 (11%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSADLWVESGRY 86
           +  M    S G   +LP G K  + +   ++ ++QN+ G  E+  P +    LW +SG +
Sbjct: 42  QLFMTDPVSPGSVFFLPNGTKIFNKLVNFMKLQQQNKFGFQEVITPLIYRKSLWEQSGHW 101

Query: 87  DSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           ++Y ++M R+   D   +     P +      +F+   +SY  LP  +       R+E  
Sbjct: 102 ENYKEDMFRVEGQDLQKEEYGLKPMNCPGHCMVFKRFARSYNELPLRYSDFSPLHRNEAS 161

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRAES 199
               G+ R R+F   D + F + PE  +    K        Y ++F              
Sbjct: 162 GALSGLTRVRKFHQDDGHIFCI-PEQVESEITKCIKMLDLCYTKVF-------------- 206

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P+G   +     L  +   + +     +     +      +      +        A  
Sbjct: 207 -PLGRGNTPTDYELRLSTRPEHYVGDVSVWNHAEAILEGILNKSG--KVWSINAGDGAFY 263

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYG 318
               +  L D   +  +V+   ++    F    ++       +K  D      + +    
Sbjct: 264 GPKIDVLLADHNNKQHQVATIQLD----FQLPERF----DLKYKDKDNTFKRPIMIHRAV 315

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------- 370
            G++    A++  S++GK   WP  + P +  ++ +   ++        +          
Sbjct: 316 FGSVERFMAMLIDSNEGK---WPFWLNPHQCMIVPLNTKNEALVHKANDLARALRGEDTP 372

Query: 371 -----RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                +L+    +V  DD  E  G +   A    +   ++VG+K +   K  I+ R +  
Sbjct: 373 ADEPVKLNSFHFNVDIDDRAEPTGYRIKEAIEKNYSFLIMVGTKEIESGKYAIRTRESRD 432

Query: 426 REDMSLEEVINYASHRFSNNR 446
            E ++L+E+I   S+  SN +
Sbjct: 433 LEHLTLDEIIQKFSNLESNFK 453


>gi|315612430|ref|ZP_07887343.1| proline--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315315411|gb|EFU63450.1| proline--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 617

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     G+ +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|226366266|ref|YP_002784049.1| threonyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|254783533|sp|C1B4B5|SYT_RHOOB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226244756|dbj|BAH55104.1| threonyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 685

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 140/452 (30%), Gaps = 57/452 (12%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   ++ 
Sbjct: 257 EAERRDHRKLGSELDLFS-FPDELGSGLPVFHPRGGIIRTEMEDYSRKRHVEEGYEFVNT 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M      +++                 P +  +   IFR
Sbjct: 316 PHITKGHLYEVSGHLDWYRDGMFPAMHIDEELNEDGTVRKPGQDYYLKPMNCPMHNLIFR 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +       
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CTREQMRDELATTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              L +    GL    +   +      +G D   E    A     +V  S      P P 
Sbjct: 435 QFVLGLLKDYGLDDFYLELSTKNPDKFVGDDAVWE---EATATLAEVAESSGLNLVPDPG 491

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + ++ D+L    ++S   ++    F    ++
Sbjct: 492 --------------------GAAFYGPKISVQVQDALGRTWQMSTIQLD----FNLPERF 527

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +  +DG K   V +     G++     V+   + G    W   +AP ++  I 
Sbjct: 528 ----DLEYTASDGTKKRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIP 580

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +   D    +  RL   G     D   +++  +         P  ++ G++ V  
Sbjct: 581 VA---ETFADHLFDVVKRLKAAGVRAEVDASDDRMQKKIFNNTAQKVPFMLLAGARDVEA 637

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V  + R       + +++ +   +      
Sbjct: 638 GAVSFRFRDGTQVNGVPVDDAVRIVTDWIGRR 669


>gi|319945653|ref|ZP_08019905.1| proline--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319748252|gb|EFW00494.1| proline--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 616

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 98/216 (45%), Positives = 140/216 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           Y RIF R GL    +  + G +GG  S EF+ +  +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPS 216



 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   ++ +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLMGVNPGRDFTAEYVDIREVREGEISPDGQGV--LNFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+   +   KI  +L K G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEASLELTSKIEDQLVKAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P+++ VG K  +D  VE+K + +G   ++  + ++   S
Sbjct: 572 IGLPIRITVGKK-AADGVVEVKIKASGDTIEVHADNLLETLS 612


>gi|270292053|ref|ZP_06198268.1| proline--tRNA ligase [Streptococcus sp. M143]
 gi|270279581|gb|EFA25423.1| proline--tRNA ligase [Streptococcus sp. M143]
          Length = 617

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDLTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     G+ +P  +APF + LI +   D+  +   EK+ A L + G +V  DD  E
Sbjct: 501 TPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTEKLEANLMEAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|254232730|ref|ZP_04926057.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis C]
 gi|124601789|gb|EAY60799.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis C]
          Length = 692

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 133/425 (31%), Gaps = 51/425 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  +   I
Sbjct: 321 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAECNADGSLRKPGQDYYLKPMNCPMHCLI 380

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F  T +  +     
Sbjct: 381 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIF-CTRDQMRDELRS 439

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     + E    A T   +V         P P  
Sbjct: 440 LLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPG- 498

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L    ++S   ++          + 
Sbjct: 499 -------------------GAAFYGPKISVQVKDALGRTWQMSTIQLDF--------NFP 531

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG  H  V +     G++     ++   + G    W   +AP ++  I +
Sbjct: 532 ERFGLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQVVGIPV 588

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++  +L   G     D   +++  +         P  V+ G + V+  
Sbjct: 589 A---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAG 645

Query: 415 KVEIK 419
            V  +
Sbjct: 646 AVSFR 650


>gi|217033470|ref|ZP_03438900.1| hypothetical protein HP9810_1g84 [Helicobacter pylori 98-10]
 gi|216944175|gb|EEC23603.1| hypothetical protein HP9810_1g84 [Helicobacter pylori 98-10]
          Length = 577

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 131/231 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ L    YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLSVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNCDYAA 231



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 86/181 (47%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDHCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGVDALLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +I+G + +   + E   R    ++ +   E+         +
Sbjct: 517 DARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTLKDTELEEKILEMLES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|24380149|ref|NP_722104.1| prolyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|81845206|sp|Q8DSJ9|SYP_STRMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24378150|gb|AAN59410.1|AE015006_3 putative prolyl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 616

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 137/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DA++ SH LM+R G + Q S GIYS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSNMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYSYLPLAHRVIEKIKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY +YG+++ +L +R+    I GPTHEE  T++ R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYGTYGEDLYKLKNRDQSDFILGPTHEETFTNLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHADYDSLDATYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R+GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRVGLDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 16/225 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +   A          E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPERDFEAAYVDIREVCEGEASPDGRGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+   + MGSYGIG  R+++AVIE +                 G
Sbjct: 452 GTRYSESMGANILDENGRSIPIIMGSYGIGVSRILSAVIEQNARIFVNKTPKGAYRFSWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + +P ++APF + LI +   D+V +    K+   L      V  D+  E+IGS+F+ +DL
Sbjct: 512 VNFPKTLAPFDVHLITVNVKDEVSQQLTAKVEESLVDAHYSVLTDNRNERIGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P++V VG K  SD  VE+K + TG   +++ E ++   S   
Sbjct: 572 IGLPIRVTVGKK-ASDGIVEVKIKSTGDTIEVNAENLLETLSILI 615


>gi|291165911|gb|EFE27958.1| threonine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 655

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 156/446 (34%), Gaps = 38/446 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRT 64
           Y + + +   RD      ++ L T  +    +G+   LP G K +  +   I + E    
Sbjct: 230 YLVYLEEIKKRDHNKLGREMELFT-TVDVIGQGLPLLLPKGTKMVMKLQRWIEDLEDREW 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +D Y + M  L D   + +     P        ++++  
Sbjct: 289 GYVRTKTPLMAKSDLYRISGHWDHYKEGMFVLGDEEVDKEVFALRPMTCPFQYYVYKNTQ 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP+   +    FR+E      G+ R R+F + + ++  + P+ ++          
Sbjct: 349 KSYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNV-VRPDQAEEELQNCLNLA 407

Query: 182 LRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +   LGL   +  R                  D    + +   +           +  
Sbjct: 408 VYVLTTLGLQDDVTFRLSK--------------WDPNNREKYLGDESYWETTQEALRNI- 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            ++      ++     A      + +  +   +   +    ++           +     
Sbjct: 453 -LVEKGLPFKEADGEAAFYGPKIDIQARNVYGKEDTMITIQLDCA--------IAENFDM 503

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +G K     +    +G      A +   + GK   W   + P ++ ++ I     
Sbjct: 504 YYIDQNGEKKRPYIIHRTSLGCYERTLAWLIEKYAGKFPTW---LCPEQVRILPI---SD 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++   L++ G DV  D   E+IG +   A L   P  ++VG K  SD  V ++
Sbjct: 558 KYAEYAEEVKQELARNGVDVTVDHRSEKIGFKIRDARLNRLPYMLVVGEKEASDRTVSVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G     +++  ++         
Sbjct: 618 SRYAGDEGIEAVDSFVDRICKEIRTK 643


>gi|224283116|ref|ZP_03646438.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140266|ref|ZP_07802459.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132776|gb|EFR50393.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 676

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/460 (15%), Positives = 144/460 (31%), Gaps = 52/460 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPEEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 420 KDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDL 479

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P                       A      + +  D++    +VS   ++    F 
Sbjct: 480 VADPG--------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPV--ADEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + ++++ V  + R       + ++E              V
Sbjct: 626 EDMNNNAVSFRFRDGSRLNGVPVDEAREKILAVIKKRAQV 665


>gi|70952361|ref|XP_745354.1| threonine--tRNA ligase [Plasmodium chabaudi chabaudi]
 gi|56525650|emb|CAH82048.1| threonine--tRNA ligase, putative [Plasmodium chabaudi chabaudi]
          Length = 505

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/465 (15%), Positives = 152/465 (32%), Gaps = 39/465 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           ++  + E  RD       L L      +   G   W   G    + +   +R+E      
Sbjct: 35  YIKFIGEGKRDHRNVGKNLNLF-FFEKETLPGSGFWFTHGANIYNKLIEFMRKEYRIRKY 93

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + S DLW  SG Y +Y   M    +  +K     P +      IF+    SY+
Sbjct: 94  EEVITPNIFSCDLWKTSGHYQNYKNCMFIF-NIENKEWGMKPMNCPGHCLIFKQLNASYK 152

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP       +  R+E+     G+ R R F   DA+ F  + +  K     +      ++
Sbjct: 153 SLPIRLADFGVLHRNEITGSLSGLTRVRRFQQDDAHIF-CSLDHIKTEVINVLQFIFYVY 211

Query: 186 HRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +  G K   +   + P   IG   +  F   +     ++   K  ++    +      DI
Sbjct: 212 NLFGFKY-DLYLSTRPPKYIGDINTWNFAEQSLKEALELANVKWKLNEGDGAFYGPKIDI 270

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM---- 298
           +  +S+                 +        +    +  +   +       +       
Sbjct: 271 VLRDSLNRTHQCGTVQLDFQLPIRFNLQYKNKEYGVGQETDSNLVNQSNKDANEKKEDST 330

Query: 299 --SATFKGADGK-------------------DHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +A       K                   D  + +    +G++    A++     GK 
Sbjct: 331 MGNAGNNDEQNKLDGENAGNNQPGGELKKGFDRPIIIHRAILGSVERFVAILVEHTSGKF 390

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             W   ++P +  ++ I        +  + I+  L+    DV  D     +  +   A L
Sbjct: 391 PFW---LSPRQAIVLPI---SDKFNEYAKYIHDVLTNNLFDVDVDISVNTLNKKIREAQL 444

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +   ++VG K +S + V ++ R     +  +++E++N      
Sbjct: 445 KQYNFILVVGEKELSTNTVTVRDRDNPNDQKYTIQELVNNFKKML 489


>gi|281357583|ref|ZP_06244070.1| prolyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281315840|gb|EFA99866.1| prolyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 575

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 105/241 (43%), Positives = 145/241 (60%), Gaps = 1/241 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK     ++E+P+DA+  SHK ++R G +   S GIYS LPLG++ ++ + AIIREE N
Sbjct: 1   MSKLVGRRIKEDPKDAKTVSHKFLVRGGYVRPVSAGIYSLLPLGKRIVEKIEAIIREEMN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R    E+ +P +  ADLW ESGRY+S G E+LR  DRNDK MI   THEE +  + R+ +
Sbjct: 61  RIEGQEVLMPVVLPADLWKESGRYESVGAELLRFRDRNDKPMILAMTHEEGIVHLVRTEL 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQIQ K+RDE RPR G++R REF MKDAYSF       +  Y +   +Y 
Sbjct: 121 NSYKQLPVMLYQIQTKYRDEARPRAGLIRVREFTMKDAYSFHTDQADLEKYYYRCHEAYE 180

Query: 183 RIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           RIF R+G+K++  + A SG +GG +SHEF+ + D GE  V  + D+              
Sbjct: 181 RIFRRVGMKNVLSIEANSGMMGGKVSHEFMAICDCGEDTVITNADYSYRANREIAVAAWK 240

Query: 242 I 242
            
Sbjct: 241 F 241



 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/193 (37%), Positives = 104/193 (53%), Gaps = 2/193 (1%)

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMS 299
                +            +D+   +  D  P   +     RGIEVG+IF  GTKY+  M 
Sbjct: 365 HYRNFNFDRDMAGTECIVTDIACVREGDPCPLTGQPLIFSRGIEVGNIFQLGTKYTESMH 424

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             +   DGK H + MG YGIG  R +AAVIE S D  G IWP S+AP+++ L  I     
Sbjct: 425 CDYLDRDGKSHPMIMGCYGIGVGRAMAAVIEQSCDEYGPIWPMSIAPYQVELCAINPDKA 484

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +ACEK+YA L+  G +V +DD GE+ GS F+ ADL+G PL+++V  K ++D+ VE K
Sbjct: 485 GVGEACEKLYADLTAAGIEVLYDDRGEKAGSMFSDADLIGIPLRLVVSPKTLADNAVEFK 544

Query: 420 HRLTGIREDMSLE 432
            R +   E + + 
Sbjct: 545 VRGSRDAEKLEIS 557


>gi|171778813|ref|ZP_02919875.1| hypothetical protein STRINF_00734 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282459|gb|EDT47883.1| hypothetical protein STRINF_00734 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 618

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD----- 334
           RGIE+GHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE         
Sbjct: 441 RGIEIGHIFKLGTRYSESMGATILDQNGRAIPIVMGCYGIGVSRILSAVIEQHARLFVSK 500

Query: 335 --------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + +I +   D+  +    K+ A L   G +V  D+  E
Sbjct: 501 TPKGAYRFAWGINFPKELAPFDVHVITVNVKDEEAQALTAKVEAELVAKGYEVLVDNRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++GS+F+ +DL+G P++V VG K  +D  VE+K + TG   +++ E +I    
Sbjct: 561 RVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKATGDTIEVNAENLIETLE 612


>gi|319760426|ref|YP_004124364.1| prolyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039140|gb|ADV33690.1| prolyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 595

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 101/312 (32%), Positives = 169/312 (54%), Gaps = 4/312 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P++ E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+E
Sbjct: 1   MRATQYLLTTLKEIPKNCETISHQLMLRSGMIRQISTGLYTWLPIGLRVLRKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    IE+S+P +Q A+LW +SGR+  YG E+LR  +R ++  + GPTHEE+++++   
Sbjct: 61  MNNISFIEISMPIIQPANLWKQSGRWSEYGPELLRFKNRVNQEFVLGPTHEEMISNLICK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+  P   YQ+  K+RDE+RPRFG++R++EF MKD YSF    +  +++YN ++  
Sbjct: 121 EIISYKQFPIKLYQMNTKYRDEIRPRFGLIRAKEFTMKDGYSFHTNNKCLQNTYNNIYHQ 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+R+GL    ++A++G  GG LSHEF    +        +           + +  
Sbjct: 181 YHTIFNRIGLNFHVVQADTGNTGGTLSHEFQAYPENNNNYTDNANQTAMM----IHHNQS 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +S+          +  T      +L    P++       +E+ + F      ++ ++ 
Sbjct: 237 KNLSIKHNNTTNQTQFTPTLPNEIMRLITIPPKHNNSIQSILELLNKFKLPINKTIKITI 296

Query: 301 TFKGADGKDHYV 312
                  + +  
Sbjct: 297 VKTNNINQKYPY 308



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 2/168 (1%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                IE+GHIF  G KYS  + +  +  +  +  + MG YGIG  R++  +IE ++D  
Sbjct: 425 FIQNKIEIGHIFQLGDKYSRSIYSCIQKYNKFNIKIIMGCYGIGITRIIPTIIEQNYDQY 484

Query: 337 GIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAV 394
           GIIWPDS+APFK+++I I  H  V  R+  E++Y +    +G DVF  D  E  G  FA 
Sbjct: 485 GIIWPDSIAPFKLAIIPINMHVSVNVRNTTEELYTQFKSIIGSDVFIYDRKENPGIMFAD 544

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            DL+G P  +++  + +++ +VE KHR T     + L+ ++ +  ++ 
Sbjct: 545 IDLIGIPHILVISDRNLNNQEVEYKHRKTRTTTKIKLDVILQFLINKL 592


>gi|323474896|gb|ADX85502.1| prolyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 481

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 173/439 (39%), Gaps = 76/439 (17%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLS 78

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +     
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAIP---- 194

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           VL++  E   F                                 
Sbjct: 195 ---------------YVLSERPEWDRFAGALHTYA------------------------- 214

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                       FD++  + +V     ++G + + G  +S  +    +  DG   Y    
Sbjct: 215 ------------FDTIMPDGKVM----QIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQT 258

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYAR 371
           SYGI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   
Sbjct: 259 SYGI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIEICEM 317

Query: 372 LSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       + 
Sbjct: 318 LNKNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVK 377

Query: 431 LEEVINYASHRFSNNRPVL 449
            EEV+N      +  +  L
Sbjct: 378 KEEVVNKVKEVLNEIQEDL 396


>gi|296117779|ref|ZP_06836362.1| threonine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969010|gb|EFG82252.1| threonine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 691

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/450 (13%), Positives = 138/450 (30%), Gaps = 49/450 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L L +        G+  + P G      +    R      G   +
Sbjct: 259 MEEAEKRDHRRLGAELDLFS-FPDDLGSGLPVFHPNGGIVRTEMEEHSRRRHIEAGYSFV 317

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +   DL+  SG    Y   M      +             +     P +  +   I
Sbjct: 318 NTPHITKQDLFERSGHLGFYKDGMFPPMHVDAEYDAEGNETKPGQDYYLKPMNCPMHNLI 377

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  +     
Sbjct: 378 FDTRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQLEEELTS 436

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    + +    GL    +   +      +  E I    T        K  ++       
Sbjct: 437 VLDFIISLLQDYGLDDFYLELSTRDPNKSVGSEEIWERSTAILARVAEKSGLELV----- 491

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++             
Sbjct: 492 --------------PDPEGAAFYGPKISVQARDAIGRTWQMSTVQLDFNMPER------- 530

Query: 297 PMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
             +  +  +DG K   + +     G++     V+   + G    W   +AP ++  I + 
Sbjct: 531 -FNLEYTASDGSKKQPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVVGIPVS 586

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +       E++ A+L K G     D   +++  +         P  ++ G++    + 
Sbjct: 587 EDNVGHL---EQVIAKLCKKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARDAEANA 643

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  +         + ++E +   ++  +  
Sbjct: 644 VSFRFLDGSQANGIDVDEAVELIANWVAQR 673


>gi|68070445|ref|XP_677134.1| threonine--tRNA ligase [Plasmodium berghei strain ANKA]
 gi|56497130|emb|CAH95381.1| threonine--tRNA ligase, putative [Plasmodium berghei]
          Length = 780

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 154/455 (33%), Gaps = 32/455 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD       L L      + S G   W   G K  + +   +R+E       E+
Sbjct: 320 IEEAKKRDHRNVGKNLNLF-FFEKETSPGSGFWFAHGAKIYNKLIEFMRKEYRIRKYEEV 378

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + S DLW  SG Y +Y   M    +  +K     P +      IF+    SY++LP
Sbjct: 379 ITPNIFSCDLWKTSGHYQNYKNCMFIF-NIENKEWGMKPMNCPGHCLIFKQLNASYKSLP 437

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E+     G+ R R F   DA+ F  + +  K     +      +++  
Sbjct: 438 IRLADFGVLHRNEITGSLSGLTRVRRFQQDDAHIF-CSLDHIKTEVVNVLQFIFFVYNLF 496

Query: 189 GLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           G K   +   + P   IG   +  F   +     ++   +  ++    +      DI+  
Sbjct: 497 GFKY-DLYLSTRPPKYIGDIDTWNFAEKSLKEALELANVEWKLNEGDGAFYGPKIDIVLK 555

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-----HIFYFGTKYSLPMSA 300
           +S+                 +        +    +  +       +I     K    +  
Sbjct: 556 DSLNRSHQCGTVQLDFQLPIRFNLQYKNKEYGVGQETDSNLVNDSNIDPIEKKEDSTLEN 615

Query: 301 TFKGAD------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                D            G D  + +    +G++    A++     GK   W   ++P +
Sbjct: 616 IDNNEDAINSQSTAILKKGFDRPIIIHRAILGSVERFVAILVEHTSGKFPFW---LSPRQ 672

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             ++ I        +  + I+  L+    DV  D     +  +   A L  +   ++VG 
Sbjct: 673 AIVLPI---SDKFNEYAKYIHNVLTNNLFDVDVDISVNTLNKKIREAQLKQYNFILVVGE 729

Query: 409 KFVSDSKVEIKHRLT-GIREDMSLEEVINYASHRF 442
           K +S + V ++ R     ++  +++E++N      
Sbjct: 730 KEISTNTVTVRDRDNPNDQKVYTIQELVNTFKKML 764


>gi|294948976|ref|XP_002785990.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900098|gb|EER17786.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/466 (16%), Positives = 153/466 (32%), Gaps = 43/466 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
            +L+E  +   +A    H+L+ +       H   S G   W   G    + +   IR E 
Sbjct: 331 KMLKEYKKNVEEAMKRDHRLIGKKQDLFFFHPTMSPGSCFWTSHGAVIYNKLVDFIRREY 390

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + S  L+ +SG   +Y   M    +   +     P +      IF   
Sbjct: 391 RLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS-MNIEGETWYLKPMNCPGHCMIFDQK 449

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP       +  R+EL     G+ R R F   DA+ F   P+  +         
Sbjct: 450 VRSYKELPIRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CRPDQVQDEITHALEF 508

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
              +++  G     +   + P     S      A+ G      +        P +   + 
Sbjct: 509 LKFVYNTFGFDF-SVCLSTRPKKAIGSRAIWDTAENGLKNALEACGIDYDLNPGDGAFYG 567

Query: 240 --DDIISLNSIVEQWTAPYAATSDV--------------------HNEKLFDSLPENKRV 277
              DI   +++                                  H+     + P +   
Sbjct: 568 PKIDIRLRDALNRYHQCGTIQLDFNLPIRFNLQYRTAETEESGDVHSVSEAANSPADDHQ 627

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              G     +   G+K +     T      G +  V +    +G++    A++   + GK
Sbjct: 628 EKAGQNSAAVENVGSK-AKADEITLGELKHGFERPVMVHRAILGSIERCTAILTEHYGGK 686

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              WP  ++P ++ ++ +        D  + +  +L ++G +   D     +  +   A 
Sbjct: 687 ---WPFWLSPRQVMVVPV---SDKYSDYADYLRKQLVRLGYEADADLSTRTMNKKVREAQ 740

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASHR 441
           +  +    +VG K  +D  V ++ R +        + E+++     
Sbjct: 741 VAAYNYIAVVGEKEQNDLTVTLRKRDSVRPLGTFGIAEMLDMFEKE 786


>gi|311064400|ref|YP_003971125.1| threonyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
 gi|310866719|gb|ADP36088.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 676

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 143/455 (31%), Gaps = 52/455 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPEEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 420 KDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDL 479

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P                       A      + +  D++    +VS   ++    F 
Sbjct: 480 VADPG--------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPV--ADEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + ++++ V  + R       + ++E          
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDEAREKILAVIK 660


>gi|322392576|ref|ZP_08066036.1| proline--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144568|gb|EFX39969.1| proline--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 617

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 99/215 (46%), Positives = 141/215 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM VP L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLVPALLSADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG+ S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGEDSQEFMAITP 215



 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 15/179 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M       +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGTDVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+        I   L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEASLALTNHIEEALVNKGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++G +F+ +DL+G P+++ VG K  ++  VE+K + TG   ++  + ++       +N 
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AAEGIVEVKIKATGDTIEVHADNLLETL-EILANK 617


>gi|323477637|gb|ADX82875.1| prolyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 481

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 173/439 (39%), Gaps = 76/439 (17%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLS 78

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +     
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAIP---- 194

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           VL++  E   F                                 
Sbjct: 195 ---------------YVLSERPEWDRFAGALHTYA------------------------- 214

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                       FD++  + +V     ++G + + G  +S  +    +  DG   Y    
Sbjct: 215 ------------FDTIMPDGKVM----QIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQT 258

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYAR 371
           SYGI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   
Sbjct: 259 SYGI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIEICEM 317

Query: 372 LSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       + 
Sbjct: 318 LNKNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVK 377

Query: 431 LEEVINYASHRFSNNRPVL 449
            EEV+N      +  +  L
Sbjct: 378 KEEVVNKVKEVLNEIQEDL 396


>gi|327405532|ref|YP_004346370.1| prolyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327321040|gb|AEA45532.1| prolyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 491

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 169/449 (37%), Gaps = 85/449 (18%)

Query: 25  LMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+ R  +  H   KG+    P G    +N+  I+  +   TG      P L     L  E
Sbjct: 19  LISRADLAEHSDVKGMMVIKPYGYAIWENMRDILDAKFKETGHQNAYFPLLIPKSYLSKE 78

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + ++  I+S
Sbjct: 79  ASHIEGFAKECAVVTHYRLMSDPNGGGVIVDPSAKLEEELIVRPTSETIIWNSYKKWIQS 138

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E++ R   +R+ EFL ++ ++   T E +     +M   Y   
Sbjct: 139 YRDLPILINQWANVVRWEMKTRL-FLRTSEFLWQEGHTAHATKEEAIKETEQMLDVY--- 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                        A+  ET            I    T+ +    
Sbjct: 195 -----------------------------AEFAET------YMAMPVIKGHKTESERFAG 219

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +      +                          + ++ G   + G  ++      +  
Sbjct: 220 ADDTYCIESM---------------------MQDGKALQAGTSHFLGQNFAKAFDVKYSD 258

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---C 361
           A GK  YV   S+G+ + R++ A+I +  D +G++ P ++AP ++ ++ I   D+     
Sbjct: 259 AQGKLEYVWATSWGV-STRLMGALIMTHSDDEGLVLPPALAPIQVVIVPIYRTDEELQLI 317

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            DA  KI A L  +   V +D D  ++ G +FA  +  G P+++ +G + +++  VEI  
Sbjct: 318 NDAVAKITAELKDLKVKVKYDSDDQKRPGWKFAEHEAKGVPVRLAIGPRDLANGVVEIAR 377

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R T  +  M+++ + +      ++ +  L
Sbjct: 378 RDTKEKYAMNIDNIGHSIVELLADIQSNL 406


>gi|213389878|gb|ACJ46005.1| threonyl tRNA synthetase [Palm lethal yellowing phytoplasma]
          Length = 641

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 168/452 (37%), Gaps = 41/452 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAII 57
           +  K +L +L+E  +      HK + +       +     G   WLP G      +   I
Sbjct: 224 KELKNYLKLLEERKQ----KDHKNINKEQEFFMLTPDVGLGFPLWLPKGATIRRIIERYI 279

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTD 116
             ++       +  P L + +L+  SG    Y + M  +   +ND+ ++  P +      
Sbjct: 280 VNKELEYDYQHVYTPVLANIELYQTSGHLKLYKENMFPIMKLQNDEKIVLRPMNCPHHMM 339

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+  ++SY++LPF   ++ +  R E      G+ R+R   + DA+ F +T    ++   
Sbjct: 340 IFKKKLRSYKDLPFKIAELGMMHRYEHSGAVSGLQRTRAMTLNDAHIF-ITENQIENEII 398

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+      ++    +        +               D    + +   + +       
Sbjct: 399 KIINFIFEVYKDFNITEYYFNLSTR--------------DVNNKKKYFENELIWQRSEFI 444

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             +   +  L    ++     A      + ++  +L   + +S   ++    F    K++
Sbjct: 445 LKNI--LTELKIPFKESVGDAAFYGPKIDIQVLTALNNEETLSTVQLD----FLLPKKFN 498

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           L    T+ G+D K+H  + +    I  +    A +   + G   +W   +AP ++ LI I
Sbjct: 499 L----TYVGSDNKEHNPILIHRAIISTLERFVAFLIEKNKGFFPLW---LAPVQVVLIPI 551

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +       +KI     K       +D    +  +   +     P Q+++G K + +S
Sbjct: 552 N--NIKYLKYTQKINKIFKKNNFRSEINDKDNSLSYKIRESQKNKIPYQIVIGEKELLNS 609

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +  +   + + + +S+EE I+  + +    +
Sbjct: 610 TLTFREYRSNLSQTVSIEEFIDIFNKKIKEKK 641


>gi|227830538|ref|YP_002832318.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|229579351|ref|YP_002837749.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|229581889|ref|YP_002840288.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|284998034|ref|YP_003419801.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|259511622|sp|C3MQL0|SYP_SULIL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511624|sp|C3NGV6|SYP_SULIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511625|sp|C3NET8|SYP_SULIY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227456986|gb|ACP35673.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|228010065|gb|ACP45827.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|228012605|gb|ACP48366.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|284445929|gb|ADB87431.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 481

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 173/439 (39%), Gaps = 76/439 (17%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLR 78

Query: 82  -ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E +    ++R RE    K+A++   T + ++    +    Y +IF+ L +     
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAIP---- 194

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           VL++  E   F                                 
Sbjct: 195 ---------------YVLSERPEWDRFAGALHTYA------------------------- 214

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                       FD++  + +V     ++G + + G  +S  +    +  DG   Y    
Sbjct: 215 ------------FDTIMPDGKVM----QIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQT 258

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYAR 371
           SYGI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   
Sbjct: 259 SYGI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIEICEM 317

Query: 372 LSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       + 
Sbjct: 318 LNKNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVK 377

Query: 431 LEEVINYASHRFSNNRPVL 449
            EEV+N      +  +  L
Sbjct: 378 KEEVVNKVKEVLNEIQEDL 396


>gi|261203861|ref|XP_002629144.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239586929|gb|EEQ69572.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 747

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 154/466 (33%), Gaps = 36/466 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 292 KQMQEHLKFLEE----AEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQKLLR 347

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 348 SEYLKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMF 406

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +      + +
Sbjct: 407 GHKERSYRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQIMKEIDGL 465

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ +   + 
Sbjct: 466 FDFLRAIYGLFGFSF-KLKLSTRPEKYMGKIETWNYAEDQLRAALTKFKGNDWEVEEGDG 524

Query: 238 DFD---------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            F          D +            Y    +   E +        + + +  E     
Sbjct: 525 AFYGPKIDITIQDALKREFQCATIQLDYQMPVNFKLEYMTGETGAKAKPTEKPAE-NPDE 583

Query: 289 YFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 + P  A    +D    G+   V +    IG+      +I     GK   WP  +
Sbjct: 584 KPAGDAAKP-DAPPTNSDEPGPGRARPVVIHRAIIGSFERFFGIIIEHFGGK---WPFWL 639

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P +I ++ +        D  E++   L     +V  D  G  +  +     +  +    
Sbjct: 640 SPRQILIVPVMP---AINDYVEELQQILKGDKLNVDIDISGNTMQKKIRTGQIAQYNFIF 696

Query: 405 IVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           +VG++  S   V I++R     +     + LEE            R
Sbjct: 697 VVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARVKLRALRKERR 742


>gi|145591039|ref|YP_001153041.1| prolyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|166980145|sp|A4WJ22|SYP_PYRAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145282807|gb|ABP50389.1| prolyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 488

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 87/436 (19%), Positives = 157/436 (36%), Gaps = 69/436 (15%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H L+    +  +    KG Y W P G +   +V  +IR   + TG  E+  P     + +
Sbjct: 24  HWLLREAELYDVRYPVKGAYVWRPYGMRLRRHVEELIRRSHDETGHQEVLFPVFIPYEFF 83

Query: 81  -VESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             ES     + KE+  ++      + ++  PT E  +  + +  +  Y++LP   YQI  
Sbjct: 84  GKESQHIRGFEKEVFWVSKGGEEGERLVLRPTSETAIMPMVKLWVHDYKDLPLRLYQIVS 143

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +    ++R RE  M                                        
Sbjct: 144 VFRAETKMTHPMIRLREISM---------------------------------------- 163

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                    +H   V  +  E QV          +      FD++     I ++      
Sbjct: 164 ------FKEAHTVHVDREDAERQV-------REAVEIYKKIFDEMCLAYMINKRPDWDKF 210

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A ++                  R +++G + Y GT ++     T+  ADG        SY
Sbjct: 211 AGAEYTIAFD------TVLPDGRTLQIGTVHYLGTNFTRVFEVTYLAADGTRRLAHTTSY 264

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSK 374
           GI + R +AA++ +  D  G + P  +AP ++ ++ I   ++          ++   L +
Sbjct: 265 GI-SERSIAAMLITHGDDAGTVLPPRLAPIQVVIVPIFYGEEEAASVISYAREVEKALRE 323

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  DD   +  G +F   +L G PL+V VG + +   +V I  R T  +  + L E
Sbjct: 324 AGMRVHIDDRPDKTPGWKFYFWELKGVPLRVEVGKRDLEKRQVVITRRDTLEKYAVGLGE 383

Query: 434 VINYASHRFSNNRPVL 449
           +++            L
Sbjct: 384 LVDAVRGLMRTVEENL 399


>gi|15609751|ref|NP_217130.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15842154|ref|NP_337191.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31793799|ref|NP_856292.1| threonyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638501|ref|YP_978725.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662454|ref|YP_001283977.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823808|ref|YP_001288562.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968044|ref|ZP_02550321.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404564|ref|ZP_03416745.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215412399|ref|ZP_03421153.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428017|ref|ZP_03425936.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431569|ref|ZP_03429488.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|218754354|ref|ZP_03533150.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558618|ref|ZP_03537694.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|224990995|ref|YP_002645682.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798303|ref|YP_003031304.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 1435]
 gi|254551665|ref|ZP_05142112.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187628|ref|ZP_05765102.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|260201742|ref|ZP_05769233.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|260205937|ref|ZP_05773428.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289444154|ref|ZP_06433898.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289448265|ref|ZP_06438009.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CPHL_A]
 gi|289553596|ref|ZP_06442806.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 605]
 gi|289570786|ref|ZP_06451013.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T17]
 gi|289575325|ref|ZP_06455552.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis K85]
 gi|289746408|ref|ZP_06505786.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis 02_1987]
 gi|289751239|ref|ZP_06510617.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T92]
 gi|289754734|ref|ZP_06514112.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289762788|ref|ZP_06522166.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis GM 1503]
 gi|294994277|ref|ZP_06799968.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297635225|ref|ZP_06953005.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732218|ref|ZP_06961336.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298526090|ref|ZP_07013499.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776889|ref|ZP_07415226.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu001]
 gi|306780653|ref|ZP_07418990.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu002]
 gi|306785417|ref|ZP_07423739.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu003]
 gi|306790017|ref|ZP_07428339.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu004]
 gi|306794098|ref|ZP_07432400.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu005]
 gi|306798512|ref|ZP_07436814.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu006]
 gi|306804375|ref|ZP_07441043.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu008]
 gi|306807585|ref|ZP_07444253.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu007]
 gi|306969787|ref|ZP_07482448.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu009]
 gi|307080714|ref|ZP_07489884.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu011]
 gi|307085303|ref|ZP_07494416.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu012]
 gi|313659553|ref|ZP_07816433.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|54039692|sp|P67583|SYT_MYCBO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|54042049|sp|P67582|SYT_MYCTU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225463|sp|A1KLW4|SYT_MYCBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225467|sp|A5U5W5|SYT_MYCTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783528|sp|C1AF85|SYT_MYCBT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2104299|emb|CAB08628.1| PROBABLE THREONYL-TRNA SYNTHETASE THRS (THREONINE-TRNA
           SYNTHETASE)(ThrRS) (THREONINE-TRNA LIGASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882439|gb|AAK47005.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31619393|emb|CAD94831.1| PROBABLE THREONYL-TRNA SYNTHETASE THRS (THREONINE-TRNA
           SYNTHETASE)(ThrRS) (THREONINE-TRNA LIGASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494149|emb|CAL72627.1| Probable threonyl-tRNA synthetase thrS [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148506606|gb|ABQ74415.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722335|gb|ABR06960.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis F11]
 gi|224774108|dbj|BAH26914.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319806|gb|ACT24409.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 1435]
 gi|289417073|gb|EFD14313.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289421223|gb|EFD18424.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CPHL_A]
 gi|289438228|gb|EFD20721.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 605]
 gi|289539756|gb|EFD44334.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis K85]
 gi|289544540|gb|EFD48188.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T17]
 gi|289686936|gb|EFD54424.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis 02_1987]
 gi|289691826|gb|EFD59255.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T92]
 gi|289695321|gb|EFD62750.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289710294|gb|EFD74310.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis GM 1503]
 gi|298495884|gb|EFI31178.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214743|gb|EFO74142.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu001]
 gi|308326483|gb|EFP15334.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu002]
 gi|308329935|gb|EFP18786.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu003]
 gi|308333550|gb|EFP22401.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu004]
 gi|308337578|gb|EFP26429.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu005]
 gi|308341244|gb|EFP30095.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu006]
 gi|308345982|gb|EFP34833.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu007]
 gi|308349051|gb|EFP37902.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu008]
 gi|308352705|gb|EFP41556.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu009]
 gi|308361561|gb|EFP50412.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu011]
 gi|308365172|gb|EFP54023.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu012]
 gi|323718811|gb|EGB27968.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CDC1551A]
 gi|326904227|gb|EGE51160.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis W-148]
 gi|328458073|gb|AEB03496.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 4207]
          Length = 692

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 133/425 (31%), Gaps = 51/425 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  +   I
Sbjct: 321 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLI 380

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F  T +  +     
Sbjct: 381 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIF-CTRDQMRDELRS 439

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     + E    A T   +V         P P  
Sbjct: 440 LLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPG- 498

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L    ++S   ++          + 
Sbjct: 499 -------------------GAAFYGPKISVQVKDALGRTWQMSTIQLDF--------NFP 531

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG  H  V +     G++     ++   + G    W   +AP ++  I +
Sbjct: 532 ERFGLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQVVGIPV 588

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++  +L   G     D   +++  +         P  V+ G + V+  
Sbjct: 589 A---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAG 645

Query: 415 KVEIK 419
            V  +
Sbjct: 646 AVSFR 650


>gi|116513081|ref|YP_811988.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123025108|sp|Q02VZ7|SYP_LACLS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116108735|gb|ABJ73875.1| Prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 616

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 100/215 (46%), Positives = 142/215 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYETYGEDLYKLKNRDSSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +Y     S
Sbjct: 121 EITSYKKLPLNVYQIATKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYLDYKKS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R GL   P+ A++G +GG  S EFI + D
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITD 215



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGIVEVKIRATGEVVEIN 603

Query: 431 LEEVINYAS 439
            +E++N   
Sbjct: 604 KDELVNTIE 612


>gi|239608840|gb|EEQ85827.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 747

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 154/466 (33%), Gaps = 36/466 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + +  ++R
Sbjct: 292 KQMQEHLKFLEE----AEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQKLLR 347

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 348 SEYLKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMF 406

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R R+F   D + F  T +      + +
Sbjct: 407 GHKERSYRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIF-CTEDQIMKEIDGL 465

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ +   + 
Sbjct: 466 FDFLRAIYGLFGFSF-KLKLSTRPEKYMGKIETWNYAEDQLRAALTKFKGNDWEVEEGDG 524

Query: 238 DFD---------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            F          D +            Y    +   E +        + + +  E     
Sbjct: 525 AFYGPKIDITIQDALKREFQCATIQLDYQMPVNFKLEYMTGETGAKAKPTEKPAE-NPDE 583

Query: 289 YFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 + P  A    +D    G+   V +    IG+      +I     GK   WP  +
Sbjct: 584 KPAGDAAKP-DAPPTNSDEPGPGRARPVVIHRAIIGSFERFFGIIIEHFGGK---WPFWL 639

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P +I ++ +        D  E++   L     +V  D  G  +  +     +  +    
Sbjct: 640 SPRQILIVPVMP---AINDYVEELQQILKGDKLNVDIDISGNTMQKKIRTGQIAQYNFIF 696

Query: 405 IVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           +VG++  S   V I++R     +     + LEE            R
Sbjct: 697 VVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARVKLRALRKERR 742


>gi|162447162|ref|YP_001620294.1| prolyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|161985269|gb|ABX80918.1| prolyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 474

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 166/425 (39%), Gaps = 69/425 (16%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L L+  ++   +  G   + PLG    +N+   +  E  +TG   + +P L    L+  E
Sbjct: 25  LCLKAELMDYSNTQGFIIYRPLGYGIWENIQNYLNNEFRKTGHQNVYMPMLIPESLFQKE 84

Query: 83  SGRYDSYGKE--MLRLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                 +  E  M+      +  + +I  PT E +    +   +KSYR+LP  + Q    
Sbjct: 85  KDHVSGFAPETAMVTTTGVENLSERLIIRPTSEVLFGTHYSKIVKSYRDLPKMYNQWCSV 144

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E +     +R +EFL ++ ++   T E +K   ++M    L ++ +LG + + +   
Sbjct: 145 VRWE-KTTRPFLRGKEFLWQEGHTVHATAEEAKKETHQM----LEVYDKLGKELLAIPFV 199

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +   G     E    A                                         YA 
Sbjct: 200 T---GRKTDKEKFAGA--------------------------------------LETYAI 218

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            + +H+ +                + G   YFG +++      F     +  Y    S+G
Sbjct: 219 EALMHDGQAL--------------QSGTSHYFGNEFAHAFDIKFLNDKNELEYAYQTSWG 264

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           + + R++ A+I    D  G++ P  VAP ++ ++ I+ +++    A ++I   LS     
Sbjct: 265 V-STRLIGAIIMVHGDDNGLVLPPYVAPTQVVIVPIRPNEE-VLSAVKQIENELSDK-FR 321

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           VF DD  +  G +F+  ++ G PL++ +G + + + +V +  R    +  ++L ++  + 
Sbjct: 322 VFVDDSDKSPGWKFSEHEMKGVPLRIEIGPRDLENGQVVVTFRHNYEKHTVALTDLHKFV 381

Query: 439 SHRFS 443
                
Sbjct: 382 EDGLK 386


>gi|325103166|ref|YP_004272820.1| prolyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324972014|gb|ADY50998.1| prolyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 490

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 165/449 (36%), Gaps = 87/449 (19%)

Query: 23  HKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+ +  +  H   +G     P G    + + +++ ++   TG      P       + 
Sbjct: 17  NELVAKADLAEHSAVRGCMVIKPYGYSIWEKMQSVLDQKFKETGHSNAYFPLFIPKSFFS 76

Query: 81  VESGRYDSYGKEMLRLA--------------DRN---DKAMIYGPTHEEVMTDIFRSHIK 123
            E+   D +  E   +               D     ++ +I  PT E ++ + ++  I+
Sbjct: 77  KEASHVDGFATECAVVTHYRLKNDGTGNIIVDEEAKLEEELIVRPTSETIIWNTYKGWIQ 136

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E +     K     L 
Sbjct: 137 SYRDLPILVNQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATREEAVEETEK----MLE 191

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++                            AD  E  +                   D  
Sbjct: 192 VY----------------------------ADFAENWLALPVVRGKKTANERFAGALDTY 223

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            + ++                               + ++ G   + G  ++      F 
Sbjct: 224 CIEAL---------------------------MQDGKALQAGTSHFLGQNFAKAFDVKFT 256

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +GK  +V   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++    
Sbjct: 257 SKEGKQEFVWATSWGV-STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPINKGEEELAR 315

Query: 364 ---ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                + I A+L   G  V +DD   ++ G +FA  ++ G P+++ +G + + ++ +E+ 
Sbjct: 316 ITVVADDIIAQLKAKGISVKYDDRDTQRPGFKFAEYEMKGVPVRLAIGGRDLDNNTIEVA 375

Query: 420 HRLTGIREDMSLE---EVINYASHRFSNN 445
            R T  +E MS +   +V+        NN
Sbjct: 376 RRDTRTKETMSRDNIADVVESLLEEIQNN 404


>gi|309799607|ref|ZP_07693832.1| prolyl-tRNA synthetase [Streptococcus infantis SK1302]
 gi|308116758|gb|EFO54209.1| prolyl-tRNA synthetase [Streptococcus infantis SK1302]
          Length = 617

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKMGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+       +I   L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEASLTLTNRIEEALVNKGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++ ++ ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHVDSLLETLE 612


>gi|288904427|ref|YP_003429648.1| prolyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|306830460|ref|ZP_07463630.1| proline--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977424|ref|YP_004287140.1| prolyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731152|emb|CBI12700.1| prolyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|304427485|gb|EFM30587.1| proline--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177352|emb|CBZ47396.1| proS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 618

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/215 (45%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++   AI+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD----- 334
           RGIE+GHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE         
Sbjct: 441 RGIEIGHIFKLGTRYSESMGATILDQNGRAIPIVMGCYGIGVSRILSAVIEQHARLFVSK 500

Query: 335 --------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + +I +   D+  +    K+ A L   G +V  DD  E
Sbjct: 501 TPKGAYRFAWGINFPKELAPFDVHVITVNVKDEEAQALTAKVEAELVAKGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++GS+F+ +DL+G P++V VG K  +D  VE+K + TG   +++ E +I    
Sbjct: 561 RVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKATGDTIEVNAENLIETLE 612


>gi|254365284|ref|ZP_04981329.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134150797|gb|EBA42842.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 692

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 133/425 (31%), Gaps = 51/425 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  +   I
Sbjct: 321 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLI 380

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F  T +  +     
Sbjct: 381 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIF-CTRDQMRDELRS 439

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     + E    A T   +V         P P  
Sbjct: 440 LLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPG- 498

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L    ++S   ++          + 
Sbjct: 499 -------------------GAAFYGPKISVQVKDALGRTWQMSTIQLDF--------NFP 531

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG  H  V +     G++     ++   + G    W   +AP ++  I +
Sbjct: 532 ERFGLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQVVGIPV 588

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++  +L   G     D   +++  +         P  V+ G + V+  
Sbjct: 589 A---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAG 645

Query: 415 KVEIK 419
            V  +
Sbjct: 646 AVSFR 650


>gi|299140723|ref|ZP_07033861.1| proline--tRNA ligase [Prevotella oris C735]
 gi|298577689|gb|EFI49557.1| proline--tRNA ligase [Prevotella oris C735]
          Length = 493

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 172/466 (36%), Gaps = 88/466 (18%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L++  + AE  S     L+++  +  Q   +G     P G    + + A + +E  +TG 
Sbjct: 5   LKQLTKRAENYSQWYNDLVVKAELAEQSPVRGCMVIKPYGYAIWEKMQAQLDKEFKKTGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEM-----LRLADRND-------------KAMIYG 107
                P L        E+     + KE       RL    +             + +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKSSEEGNSVVVDPSAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + ++  I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKGWIHSWRDLPIMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATR 183

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++    KM                 + A+                       F  K  
Sbjct: 184 EEAEVEAQKML---------------KVYAD-----------------------FAEKWM 205

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               +    ++ +                                       + ++ G  
Sbjct: 206 AVPVLQGVKSETERFAGALDTYTIEAM---------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     TF   + K  YV   S+G+ + R++ A+I    D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLMGALIMVHSDDNGLVLPPKLAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++ ++ I   D   +    K+     +L ++G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVIIVPIYKGDDQLKAISNKLQPVINKLEELGISVKYDDSDNKRPGFKFADYELKGIPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++G + + ++ +EI  R T  +E +S + +I   +    + +  L
Sbjct: 364 LVMGGRDLENNTIEIMRRDTLEKESVSFDGIIERVTTLLDDIQANL 409


>gi|306832697|ref|ZP_07465834.1| proline--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304425153|gb|EFM28282.1| proline--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 618

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/215 (45%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++   AI+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD----- 334
           RGIE+GHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE         
Sbjct: 441 RGIEIGHIFKLGTRYSESMGATILDQNGRAIPIIMGCYGIGVSRILSAVIEQHARLFVSK 500

Query: 335 --------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + +I +   D+  +    K+ A L   G +V  DD  E
Sbjct: 501 TPKGAYRFAWGINFPKELAPFDVHVITVNVKDEEAQALTAKVEAELVAKGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++GS+F+ +DL+G P++V VG K  +D  VE+K + TG   +++ E +I    
Sbjct: 561 RVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKATGDTIEVNAENLIETLE 612


>gi|308379255|ref|ZP_07485665.2| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu010]
 gi|308357619|gb|EFP46470.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu010]
          Length = 697

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 133/425 (31%), Gaps = 51/425 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 267 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 325

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  +   I
Sbjct: 326 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLI 385

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F  T +  +     
Sbjct: 386 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIF-CTRDQMRDELRS 444

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     + E    A T   +V         P P  
Sbjct: 445 LLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPG- 503

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L    ++S   ++          + 
Sbjct: 504 -------------------GAAFYGPKISVQVKDALGRTWQMSTIQLDF--------NFP 536

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG  H  V +     G++     ++   + G    W   +AP ++  I +
Sbjct: 537 ERFGLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQVVGIPV 593

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++  +L   G     D   +++  +         P  V+ G + V+  
Sbjct: 594 A---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAG 650

Query: 415 KVEIK 419
            V  +
Sbjct: 651 AVSFR 655


>gi|312869026|ref|ZP_07729203.1| proline--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311095452|gb|EFQ53719.1| proline--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 578

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 144/244 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +ENP DAE  SH +M R G I+Q S G++++LPL  + +  ++ I+ EE
Sbjct: 1   MKQSKLLIPTKKENPSDAEALSHIMMERAGYIYQISAGVWAYLPLAYRVIRKIHQIMHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA +M  P++  ADLW ++GRY++YG  + +  D ND+  I GPT EE MT+I R 
Sbjct: 61  MEKAGAFQMETPSMLPADLWKQTGRYEAYGDTLYKFKDHNDREYILGPTDEEAMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFR+E RPR+GV+R +EF M DAYSF    EG   +Y     +
Sbjct: 121 SVKSYKKLPLVVYQITDKFRNEPRPRYGVLRGKEFSMLDAYSFAADEEGLDEAYQAQAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGGD S EF   A+ GE  +  +       +    + FD
Sbjct: 181 YRNIFDRAGLSYKVILADSGTIGGDNSQEFSAPAEIGEDVIVYTDGGYAANLEKATSKFD 240

Query: 241 DIIS 244
            +  
Sbjct: 241 AVQQ 244



 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 2/224 (0%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-N 274
            GE     + +++   +       DD     +             D  N +  +  P+  
Sbjct: 342 VGEDVKILADNYVKVLVNMACGANDDGHHYVNANIDRDFRVDEFGDFRNVQEGEIAPDGY 401

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                 GIE+GHIF  GT YS  + A     +G+   + MG YGIG  R+++AV E + D
Sbjct: 402 PIKFTNGIEIGHIFKLGTGYSKKLGAQVLDKNGRLVDMIMGCYGIGVTRMLSAVAEQNAD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G++WPDS+APF + +I + A          ++  +L+  G +V  DD  E+ G +FA 
Sbjct: 462 ENGLVWPDSIAPFDVHVIPVNAKKDEQMTMANELEQQLTAAGYEVLVDDRKERAGVKFAD 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +DL+G PL+V +G K  +D  VE+K R TG   ++  EE++N  
Sbjct: 522 SDLIGIPLRVTIGKK-AADGIVEVKIRKTGETLEVKQEELVNTV 564


>gi|306825925|ref|ZP_07459263.1| proline--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431857|gb|EFM34835.1| proline--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 617

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF         +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYNSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AVIE         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVIEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     G+ +P  +APF + LI +   D+  +   EK+ A L + G +V  DD  E
Sbjct: 501 TPKGEYRYAWGVNFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMEAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|282877938|ref|ZP_06286747.1| proline--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299939|gb|EFA92299.1| proline--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 493

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 169/447 (37%), Gaps = 85/447 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  Q + +G     P G    + +   + +    TGA     P L        E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGAQNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEM-----LRLADRN-------------DKAMIYGPTHEEVMTDIFRSHIKS 124
           +     + KE       RL                 ++ +I  PT E ++ + +++ I+S
Sbjct: 82  AEHVKGFAKECAVVTHYRLKSSETGDSVEVDPAAKLEEELIIRPTSETIIWNTYKNWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    KM       
Sbjct: 142 WRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATREEAEEEAQKM------- 193

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                   + + A+                       F  +      +    ++ +    
Sbjct: 194 --------LKVYAD-----------------------FAEQWMAVPVVQGVKSETERFAG 222

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                              + ++ G   + G  ++     T+  
Sbjct: 223 ALDTYTIEAM---------------------MQDGKALQSGTSHFLGQNFAKSFDVTYLN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I  +++  +  
Sbjct: 262 KENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKLAPIQVVIIPIAKNEEQLKAI 320

Query: 365 CEKI---YARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +K+      L K+G  V +DD   ++ G +FA  +L G P+++++G + + ++ +E+  
Sbjct: 321 ADKLNPFMDDLKKLGITVKYDDSNNKRPGFKFADYELKGVPVRLVMGGRDLENNTIEVMR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRP 447
           R T  +E + +E + +Y      + + 
Sbjct: 381 RDTLEKETIPVEGLADYIYKLLDDIQA 407


>gi|294790871|ref|ZP_06756029.1| threonine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458768|gb|EFG27121.1| threonine--tRNA ligase [Scardovia inopinata F0304]
          Length = 685

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/460 (16%), Positives = 148/460 (32%), Gaps = 52/460 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      ++ L +    +   G+  + P G   ++ +    R E  +
Sbjct: 244 KAYLQRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMKEYSRIEHRK 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 R        P + 
Sbjct: 303 NHYSFVQTPHITKGGLYETSGHLQWYKDGMYPPMHLDEEKDANGKVIREGFDYYLKPMNC 362

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 363 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIY-CTREQM 421

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L++    GL    +   +        S E    A     +V        
Sbjct: 422 KGELTSLLSFVLKLLKDFGLNDFYLELSTKDEHKYVGSDEIWEEATRTLAEVARDSGLDL 481

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P                       A      + +  D+L    ++S   ++      
Sbjct: 482 VDDPG--------------------GAAFYGPKISVQARDALGRTWQLSTIQLDFNLPER 521

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           FG +Y          ADG     V +     GA+    A++   + G    W   +AP +
Sbjct: 522 FGLEY--------IAADGTRQRPVMIHRALFGAIERFFAILLEHYAGAFPAW---LAPVQ 570

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +    +   D  ++I  RL +       D   ++ G +   A     P  +IVG 
Sbjct: 571 VLGVPV---SEANSDYLKEILDRLDESLVRCEMDASDDRFGKKIRNASKSKTPFILIVGD 627

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
              +   V  + R       ++++  + + +   ++++ +
Sbjct: 628 DDQARGAVSFRFRDGSQLNGVAVDNALAWINQAITSHQQI 667


>gi|262283493|ref|ZP_06061259.1| prolyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262260984|gb|EEY79684.1| prolyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 616

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L+LR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGDDLFKLKNREGSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVTYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  +    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSEIDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVAGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGNGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+AT    +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNATVLDENGRAVPLVMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      +KI   L   G +V  DD  E++G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEESLALTDKIEESLVGAGYEVLVDDRNERVGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + +G   ++  + +I   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKASGDTIEVHADNLIETLS 612


>gi|257068556|ref|YP_003154811.1| threonyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559374|gb|ACU85221.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Brachybacterium
           faecium DSM 4810]
          Length = 666

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/465 (16%), Positives = 148/465 (31%), Gaps = 56/465 (12%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +K  L   QE   +AE   H+     L L +    +   G+  + P G      +    R
Sbjct: 238 TKEELRAHQERIAEAERRDHRRLGSELDLFS-FPDEIGSGLPVFHPKGAMVKMEMEDYSR 296

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIY 106
                 G   +S P +   +L+  S   + Y + M      +++                
Sbjct: 297 RRHVEAGYSFVSSPHITKKNLFETSRHLEWYAEGMYPPMHVDEERDDEGNITRQGQDYYL 356

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   ++RS  +SYR LP   ++    +R E      G+ R+R F   DA+ +  
Sbjct: 357 KPMNCPMHNLVYRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-T 415

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCS 224
           T E  K     +    L +    GL    +   +  P            A     +V   
Sbjct: 416 TREQMKEELTSLLGFVLDLLRDYGLDDFYLELSTRDPEKSVGDETTWDEATRTLEEVATE 475

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 P P                       A      + +  D++    ++S   ++ 
Sbjct: 476 SGLELVPDPG--------------------GAAFYGPKISVQAKDAIGRTWQLSTIQLDF 515

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                F  +Y+ P        DG +   V +     G++     V+   + G   +W   
Sbjct: 516 FEPELFELEYTAP--------DGSRQRPVMIHRALFGSIERFFGVLLEHYAGAFPVW--- 564

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++  + + A         E++ A+L   G  V  D   +++  +         P  
Sbjct: 565 LAPVQVVGVPVAA---EYVPYLEEVAAKLRAHGVRVEVDSSDDRMQKKIRTHTKEKVPYL 621

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +I G +  +   V  + R       + ++  ++       +   V
Sbjct: 622 LIAGGEDQAHGAVSFRMRDGSQDNGIDVDAAVDRIVTAIRDKAQV 666


>gi|291542490|emb|CBL15600.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           bromii L2-63]
          Length = 648

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 160/448 (35%), Gaps = 41/448 (9%)

Query: 10  ILQENPR---DAEIASH-KLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L+E+ +   +A++  H KL              +G+   LP G + +  +   + + + 
Sbjct: 228 MLEEHLKKLEEAKLRDHNKLGRELEYFTTVDYVGQGLPILLPKGARVVQLLQRWVEDVEQ 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDIFR 119
             G +    P L   DL+  SG +D Y   M  L D +D+        P        ++ 
Sbjct: 288 SKGCLLTKTPLLAKRDLYKISGHWDHYLDGMFVLGDPHDEEKECFALRPMTCPFQYQVYL 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SYR+LP    +    FR+E      G++R R+F + + +   L P+  +  +    
Sbjct: 348 NKQRSYRDLPMRLTETSTLFRNEASGEMHGLIRVRQFTISEGHYI-LRPDQLEQEFKGCL 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    +GL        S     + ++++    +  E      K  +D         
Sbjct: 407 ELAKYFLDTVGLLENCTFRFSQWDPENKNNKYEGTKEQWEESQAVMKTILD--------- 457

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                 L+   E      A      + +  +   +   +    I++     FG       
Sbjct: 458 -----DLDVDYEIGIDEAAFYGPKLDIQYKNVFGKEDTIVTIQIDMLLAERFG------- 505

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG+      +    +G      A +     G   +W   +AP +I L+ IK  
Sbjct: 506 -MYYIDKDGQKKLPYIIHRTSLGCFERTLAYMIERFAGVMPLW---LAPEQIRLLPIK-- 559

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  + I  RL+ +G  V  D   E IG +   A L   P  +++G   ++ S V 
Sbjct: 560 -EGNVEYAQGIADRLTSLGMRVTVDSRDENIGPKIKAARLERIPYILVIGDNEMNSSTVT 618

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G   +M ++E +    +     
Sbjct: 619 VRSRKRGEIPNMPVDEFVALVKNEVDTK 646


>gi|86146905|ref|ZP_01065224.1| prolyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85835357|gb|EAQ53496.1| prolyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 546

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 134/206 (65%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GA+E+ +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAVEILMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ I SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRNEISSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  EG + SY  M  +Y + F R+GL+  P+ A+SG IGG 
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDAYCKAFDRMGLEYRPVLADSGAIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFP 231
            S EF VLA++GE  +  S +     
Sbjct: 181 GSQEFHVLAESGEDLIAFSSESDYAA 206



 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I        A   D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 341 DGKHYFGINWGRDVELAQVEDLRNVVEGDLSPCGQGTIQLKRGIEVGHIFQLGNTYSKAM 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +    G DGK   ++MG YGIG  RVVA+ IE +HD  GI WPD++APF+++++ +  H 
Sbjct: 401 NCNVLGPDGKSVILEMGCYGIGVSRVVASAIEQNHDKFGITWPDALAPFQVAIVPMNMHK 460

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F   +L+G P  +++G + + +   E
Sbjct: 461 SERVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFKDIELVGIPHTIVIGDRSMDEGNFE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +E ++++ VI + + + +
Sbjct: 521 YKNRRTGDKEAIAMDTVIEHLTAQLA 546


>gi|215446866|ref|ZP_03433618.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289758745|ref|ZP_06518123.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289714309|gb|EFD78321.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
          Length = 692

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 132/425 (31%), Gaps = 51/425 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M      +             +     P +  +   I
Sbjct: 321 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLI 380

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F  T +        
Sbjct: 381 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIF-CTRDQMSDELRS 439

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     + E    A T   +V         P P  
Sbjct: 440 LLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPG- 498

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L    ++S   ++          + 
Sbjct: 499 -------------------GAAFYGPKISVQVKDALGRTWQMSTIQLDF--------NFP 531

Query: 296 LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG  H  V +     G++     ++   + G    W   +AP ++  I +
Sbjct: 532 ERFGLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAW---LAPVQVVGIPV 588

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++  +L   G     D   +++  +         P  V+ G + V+  
Sbjct: 589 A---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAG 645

Query: 415 KVEIK 419
            V  +
Sbjct: 646 AVSFR 650


>gi|238924616|ref|YP_002938132.1| threonyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|238876291|gb|ACR75998.1| threonyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 676

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 154/445 (34%), Gaps = 43/445 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAI 67
           E   +A+   H  + R   +        +G+   +P G K +  +   I + +++  G +
Sbjct: 250 ERMEEAKKRDHNKLGREMELFTTVDVIGQGLPLMMPKGTKMIMKLQRWIEDLEDKEWGYV 309

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               P +  +DL+  SG +D Y   M  L     D  ++ M   P        ++++   
Sbjct: 310 RTKTPLMAKSDLYKISGHWDHYLDGMFVLGDPEKDGEEEVMALRPMTCPFQYYVYKAKQH 369

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP+   +    FR+E      G+ R R+F + + ++  + P+  +      F    
Sbjct: 370 SYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNV-IRPDQCEEELKACFNLNR 428

Query: 183 RIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +   LGL+  +  R                  D   T+ +   D           +   
Sbjct: 429 YVLKVLGLENDVTYRLSK--------------WDPKNTEKYLGDDEYWNSTQEVLRNI-- 472

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +I  N    +     A      + +  +   +   +    ++           +      
Sbjct: 473 LIEENVPFVEADGEAAFYGPKIDIQAKNVYGKEDTMVTIQLDCA--------IAENFDLY 524

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +G K     +    +G      A +   + GK   W   + P ++ ++ I    + 
Sbjct: 525 YIDQNGDKIRPYIIHRTSLGCYERTLAWLIEHYAGKFPTW---LCPEQVRVLPI---SEK 578

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L +   DV  D+  E+IG +   A +   P  ++VG+   +D  V ++ 
Sbjct: 579 YADYAKKVADELKRNDVDVTVDNRAEKIGYKIREARMDKLPYMLVVGADEEADGTVSVRS 638

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G      L + I+         
Sbjct: 639 RFEGNEGVKPLSDFIDQICKEIRTK 663


>gi|323142407|ref|ZP_08077233.1| threonine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413100|gb|EFY03993.1| threonine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 597

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 151/450 (33%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L    E   +A    H  + R            +G+   LP G + +  +   + + 
Sbjct: 174 KEELDAYLEQQAEALKRDHNKLGRDLEYFTTVDYIGQGLPILLPKGARVIQLLQRWVEDV 233

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDI 117
           + + G +    P +   DL+  SG +D Y   M  L D +D+        P        +
Sbjct: 234 EQKRGYLLTKTPLMAKRDLYRISGHWDHYLDGMFILGDPHDETKECFALRPMTCPFQYQV 293

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F +  +SYR LP    +    FR+E      G++R R+F + + +   L P+  +  +  
Sbjct: 294 FLNRQRSYRELPMRLGETSTLFRNEDSGEMHGLIRVRQFTISEGHLI-LRPDQLEEEFKG 352

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                      +G+        S     + ++++   A+             D    +  
Sbjct: 353 CLDLAKYCLETVGMLDKCTFRFSQWNPANPNNKYEGTAE-----------QWDHAQAAMK 401

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              DD+     +     A Y    D+    +F      K  +   I++  +       + 
Sbjct: 402 KILDDLGVNYEVGFDEAAFYGPKLDIQFHNVFG-----KEDTIVTIQIDMLL------AE 450

Query: 297 PMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   +G+      +    +G      A +  ++ G    W   +AP ++  + + 
Sbjct: 451 KFGMYYVDENGEKKLPYIIHRTSLGCYERTLAYLIETYAGALPTW---MAPEQVRFLPVT 507

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D C ++  +L   G     D   E+IG +     L   P  ++VG + + ++ 
Sbjct: 508 ---DRAVDYCYELAHKLEANGYRATVDARNEKIGKKIREGQLEKIPYMLVVGDRDMENNT 564

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  ++R  G    MS E           + 
Sbjct: 565 VSPRNRTEGDMGAMSFEAFEAILKDVVDSK 594


>gi|221124302|ref|XP_002161215.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 587

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/198 (52%), Positives = 138/198 (69%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           +R GMI +   GIY+++P+G + +  V AI+REE NR GA+E+++P +Q A+LW E+GR+
Sbjct: 1   MRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREEMNRAGAVELTMPVIQPAELWQETGRF 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  G E+LR+ DR+++  +  PT EEV+TDI R  IKSY+ LP   YQIQ KFRDE RPR
Sbjct: 61  DKMGPELLRIKDRHERDYVVQPTSEEVVTDIARQEIKSYKQLPKNLYQIQTKFRDERRPR 120

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           FG+MR REF+MKDAYSFD   + +K SY  M  +Y RIF R GL    + A+SG IGGDL
Sbjct: 121 FGLMRGREFIMKDAYSFDRDQDSAKASYQVMAKAYRRIFDRFGLTYRAVAADSGAIGGDL 180

Query: 207 SHEFIVLADTGETQVFCS 224
           S EF V+A TGE  +   
Sbjct: 181 SEEFQVIAATGEDAIVYC 198



 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVG 285
           M   I   N +   I  +N    +        +D+ N    D+ P+ K      RGIEVG
Sbjct: 337 MADWICGANEEGFHIRGVN--WGRDLPEPDMVADLRNVVEGDASPDGKGVLAIERGIEVG 394

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           H+FY GTKYS  M+ATF   +GK  +++MG YGIG  R+ AA IE +HD KGIIWPD++A
Sbjct: 395 HVFYLGTKYSKAMNATFLDVNGKPQFMEMGCYGIGITRLPAAAIEQNHDDKGIIWPDALA 454

Query: 346 PFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           PF + L  I        + A +K+Y  L   G DV  DD  E+ G+ FA  +L+G P +V
Sbjct: 455 PFTVVLCPINPDRFPDVKAAADKLYEELLSAGVDVILDDRNERPGAMFADWELIGVPHRV 514

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +G + + +  VE +HR       + + E+ +    R  
Sbjct: 515 NIGDRGLKEGVVEYQHRRESAATSVPVAEIASLLLGRLK 553


>gi|109947885|ref|YP_665113.1| prolyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|123173273|sp|Q17W62|SYP_HELAH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109715106|emb|CAK00114.1| proS [Helicobacter acinonychis str. Sheeba]
          Length = 577

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/231 (41%), Positives = 132/231 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQIGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR     +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKGNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I + LGL    + A++G IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILNDLGLDFRIVEADNGAIGGSKSKEFVVLTECGEDTIVVCQNCDYAA 231



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 87/181 (48%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF     Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 397 ESDCCPNCQRALKYHKSLEVGHIFKLSQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 456

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+V +    ++Y RL + G DV  DD 
Sbjct: 457 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEVQKKLAFEVYERLLQRGVDVLLDDR 516

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + + + + E   R    ++ +   E+         +
Sbjct: 517 DVRFGAKMRDFELIGERLALIVGKQTLENKEFECIKRANLEKQTLKDRELEEKILEILES 576

Query: 445 N 445
            
Sbjct: 577 E 577


>gi|20092682|ref|NP_618757.1| prolyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|74580394|sp|Q8TJA2|SYP_METAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19917968|gb|AAM07237.1| prolyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 480

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 152/425 (35%), Gaps = 67/425 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G     +   IIRE  + +G  E   P L    +   E+     + 
Sbjct: 32  VRYPVKGLYVWYPFGFAIRRSTYNIIREILDNSGHQETLFPLLIPENEFMKEAEHIKGFE 91

Query: 91  KEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +     D  D  +   PT E  +  +++  ++S+ + P   YQI   FR E +  
Sbjct: 92  NEVYWVTHGGKDSLDIPLALRPTSETAIYPMYKMWVRSHADFPIKLYQIVNTFRYETKHT 151

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R R     +  SF                                           
Sbjct: 152 RPLIRLR-----EITSF-----------------------------------------KE 165

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +H      +  E QV  +             +    I     V    +            
Sbjct: 166 AHTVHATWEDAEAQVKEA------------VELYTEIYRRLAVPVLRSRRPDWDKFPGAD 213

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             D++ +      R +++G + + G  ++      ++  DG+  Y     YGI + R +A
Sbjct: 214 YTDAI-DAMMPDGRTLQIGTVHHLGDNFAKTFDIKYEAPDGEQRYAHQTCYGI-SERSIA 271

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           A I    D KG++ P  +AP ++ +I I  K   +    AC  +  RL K G  V  D  
Sbjct: 272 ATISIHGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVLAACRDVQERLKKTGVKVEIDAS 331

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G+++   ++ G PL++ +G + + ++      R TG +E + L E+      +F  
Sbjct: 332 DLRPGAKYYRWEMKGVPLRLEIGPRDLENNVAVSVRRDTGEKEQIPLPEIETGVLQKFEA 391

Query: 445 NRPVL 449
            +  L
Sbjct: 392 IQNSL 396


>gi|313898260|ref|ZP_07831797.1| proline--tRNA ligase [Clostridium sp. HGF2]
 gi|312956642|gb|EFR38273.1| proline--tRNA ligase [Clostridium sp. HGF2]
          Length = 564

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 138/227 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK +   L+EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSKSYFYTLRENVKDEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G + SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLQESYMKMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  I  R  L    ++A++G +GG LS EF  + + GE  V   +  
Sbjct: 181 YKNIMDRCNLNYKIVKADTGAMGGSLSEEFQAITEIGEDVVVTCEGC 227



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 3/183 (1%)

Query: 264 NEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                D  P+  +     +GIEVG+ F  GTKY+  +   ++  + K H V+MG YG G 
Sbjct: 383 QVHEGDICPKCGKPLKFCKGIEVGNTFKLGTKYAKALGLEYQDVNNKLHPVEMGCYGFGL 442

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +AA++E  +D  GIIWP SVAPF+++++ + + D        ++Y  L K G DV  
Sbjct: 443 ERCMAAIVEQHNDASGIIWPTSVAPFEVAVVVVSSKDDEQMRIGNELYEALKKEGIDVLL 502

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+ G +F   +L+G P ++ VG + + D  VE + R      D+SL E+++     
Sbjct: 503 DDRKERPGVKFKDMELIGIPYRITVG-RGIKDGNVEFRARTADESSDVSLHEIVDMVKKE 561

Query: 442 FSN 444
              
Sbjct: 562 LQK 564


>gi|291059576|gb|ADD72311.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 619

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/272 (35%), Positives = 142/272 (52%), Gaps = 6/272 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S +F P L+  P DA IASH+L++R G + + + G++++LPLG +    + AIIREE
Sbjct: 1   MKMSAFFAPTLRSAPADATIASHQLLMRAGYVRKIANGLFAYLPLGLRVRHKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +E + P +  A+LW ESGR+   G E+LR  +R D  +++ PT EE  T + R 
Sbjct: 61  LEAIGCLECTAPVVTPAELWKESGRWYRMGAELLRAKNRLDHELLFSPTAEESFTALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P + YQI  K+RDE+RPR+G+MR+REF M DAYSF         +Y K   +
Sbjct: 121 DCTSYKHFPLSLYQINAKYRDEIRPRYGLMRAREFTMADAYSFHTDCACLARTYEKFAHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS------ 234
           Y  IF R+GL  I + A  G +GG  S EF+V +  G+  +                   
Sbjct: 181 YRAIFRRIGLSVIAVHAHLGAMGGQESEEFMVESAVGDNTLLLCPHCTYAANCEKAVGQR 240

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              D  D    +          AA  +VH   
Sbjct: 241 PLPDTHDTHLKDEHEGSDLKTPAAMREVHTPH 272



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 3/176 (1%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      +G E+GH+F  G KY+  M  TF    G   +  MG YGIG  R +A+V
Sbjct: 440 CIHCGAPLYEKKGNELGHLFKLGDKYTRSMHLTFTDEQGVRQFPLMGCYGIGLDRTLASV 499

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+ HD +GI WP +++P+ + LI I  H Q    A E +Y +L   G +V +DD  E+ 
Sbjct: 500 VENHHDTRGISWPLAISPYAVVLIPI-PHTQAPYAAAEALYVQLRTRGVEVLFDDRAERP 558

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +FA ADL+G PL+V++ +K +   +VE   R        + EE   + +     
Sbjct: 559 GVKFADADLIGIPLRVVLSAKTLP--RVECTTRCGAHTYFFTQEEASEHIARLLEQ 612


>gi|126138470|ref|XP_001385758.1| mitochondrial threonyl tRNA synthetase [Scheffersomyces stipitis
           CBS 6054]
 gi|126093036|gb|ABN67729.1| mitochondrial threonyl tRNA synthetase [Scheffersomyces stipitis
           CBS 6054]
          Length = 449

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 141/444 (31%), Gaps = 66/444 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
             + G   +LP G +  + +   ++ +Q + G  E+  P +  + LW  SG + +Y  +M
Sbjct: 31  PLTPGSIFFLPHGTRIFNKLVQFMKNQQTKYGFQEVITPLIYKSKLWETSGHWQNYKDDM 90

Query: 94  LRL--------ADRNDK-----------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            ++         D +++                P +      IF    +SY  LP     
Sbjct: 91  FKVVGNDVSKEHDIHNEQYSHDKSEGLHEYGLKPMNCPGHCLIFSKFDRSYNELPIRLSD 150

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--K 191
                R+E      G+ R R F   D + F           +         +   G+  K
Sbjct: 151 FSSLHRNEASGALSGLTRVRRFHQDDGHIF-CEMGQINQEIHNTINLIKGTYKVFGIGEK 209

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            I     + P                  + F            +  +  D  +     + 
Sbjct: 210 DIEYFLSTRP-----------------EEKFMGDIETWNMAEEQLKNVLDTAAGQGNWQI 252

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  L D+  +  +V    ++    F    ++ L   A     D     
Sbjct: 253 NEGGGAFYGPKIDVLLTDAFNKKHQVGTIQLD----FQLPARFDLKYVAEDGTRDN--QP 306

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + +     G++    A++   + GK   WP  + P +  ++ + A      +A EK++  
Sbjct: 307 IMVHRAVFGSLERFFAILLDHYQGK---WPFWINPRQAVIVPVNAS---HVEAAEKLHKM 360

Query: 372 LS--------------KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           LS                   V  D   E +GS+   A   G+   +++G K + +  V 
Sbjct: 361 LSGDIINSVNDISPITGYNFYVDVDRRAETVGSRIKDAVQKGYSYIIMIGDKDIKNGTVA 420

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+ R +    ++  EE+       
Sbjct: 421 IRTRDSRQIVNLKPEEIYEKFVEL 444


>gi|320547753|ref|ZP_08042037.1| proline--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320447513|gb|EFW88272.1| proline--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 618

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/215 (44%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++++  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQTQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y +   +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDETYEEYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD----- 334
           RGIE+GHIF  GT+YS  M AT    +G+   + MG YGIG  R+++AVIE         
Sbjct: 441 RGIEIGHIFKLGTRYSESMGATILDQNGRAVPIIMGCYGIGVSRILSAVIEQHARLFVSK 500

Query: 335 --------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + +I +   D+  +    K+ A L + G +V  DD  E
Sbjct: 501 TPKGAYRFAWGINFPKELAPFDVHVITVNVKDEEAQALTAKVEAELVEKGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++GS+F+ +DL+G P++V VG K  +D  VE+K + TG   +++ E +I    
Sbjct: 561 RVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKATGDTIEVNAENLIETLE 612


>gi|54025682|ref|YP_119924.1| threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|54017190|dbj|BAD58560.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 703

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/449 (15%), Positives = 138/449 (30%), Gaps = 54/449 (12%)

Query: 16  RDAEIASHKLM-LRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            +AE   H+ + L   +     +   G+  + P G      +    R      G   ++ 
Sbjct: 272 AEAERRDHRKLGLELDLFSFPDELGSGLPVFHPKGGIIRKELEEYSRRRHVDAGYEFVNT 331

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M      +             +     P +  +   IFR
Sbjct: 332 PHITKGHLFEVSGHLDWYRDGMFPAMHLDAEYNDDGTVRKPGQDYYVKPMNCPMHNLIFR 391

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SYR LP   ++    +R E      G+ R R     DA+ +  T E          
Sbjct: 392 ARGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CTKEQMHAELTNTL 450

Query: 179 VSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              L +    GL    +   +  P     S E    A    ++V  +      P P    
Sbjct: 451 QFVLGLLADYGLDDFYLELSTKDPKKFVGSDEIWEEATETLSKVAQASGLELVPDPG--- 507

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      + +  D+L    ++S   ++      FG +Y+ P
Sbjct: 508 -----------------GAAFYGPKISVQAKDALGRTWQMSTIQLDFNLPERFGLEYTAP 550

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                   DG K   V +     G++     V+   + G    W   ++P ++  I +  
Sbjct: 551 --------DGSKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW---LSPVQVVGIPVA- 598

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      +++   L   G     D   +++  +         P  ++ G + V+   V
Sbjct: 599 --EAFAPHLDRVVELLRDHGVRAQVDRSDDRMQKKIFNNTAQKVPFMLLAGERDVNAGAV 656

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + R       + + + +       +N 
Sbjct: 657 SFRFRDGTQVNGVPVADAVATIVAWITNR 685


>gi|313891198|ref|ZP_07824817.1| proline--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120561|gb|EFR43681.1| proline--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 617

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGIYAYLPLANRTIEKLKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNDEDLDITYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL+   +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRSGLEFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 16/221 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   ++ +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVTGANKDGYHLLGVNPERDFHAEYVDIREVKEGEISPDGHGV--LRFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  + AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSNSLGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRFAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D   K+   L+  G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPEELAPFDVHLITVNTKDQEAQDLTSKVEKDLTAKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G P+++ VG K  ++  VEIK + +G   ++  + +I   
Sbjct: 572 IGLPIRITVGKK-AAEGIVEIKIKASGDSIEVHADNIIETL 611


>gi|254692867|ref|NP_001157089.1| threonyl-tRNA synthetase, mitochondrial isoform 2 [Mus musculus]
 gi|14290460|gb|AAH08995.1| Tars2 protein [Mus musculus]
          Length = 697

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 144/463 (31%), Gaps = 84/463 (18%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +     AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R
Sbjct: 291 LLRNWEARREAAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR 350

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN----------------DKAMIYG 107
            G  E+  PTL S  LW +SG ++ Y  +M  L                       +   
Sbjct: 351 RGFSEVKTPTLFSTKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALK 410

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R   F   DA+ F   
Sbjct: 411 PMNCPAHCLMFAHRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA- 469

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P   +            ++  LG     +   + P G          A+           
Sbjct: 470 PHQLEAEIQGCLDFLRCVYSVLGFSF-HLALSTRPPGFLGEPRLWDQAE----------- 517

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                                                +  L D+L    +     ++   
Sbjct: 518 -----------------------------------QIDVHLHDALGRPHQCGTIQLD--- 539

Query: 287 IFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            F    ++       +KG  G     V +    +G++  +  V+  S  GK   WP  ++
Sbjct: 540 -FQLPLRF----DLQYKGPAGTPECPVLIHRAVLGSVERLLGVLAESCGGK---WPLWLS 591

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           P ++ +I ++   +   +   ++   L   G     D D G  +  +   A L  +  Q 
Sbjct: 592 PLQVVVIPVRTEQE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQF 648

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +VG +  S   V ++ R      +  L E +       +   P
Sbjct: 649 VVGQREQSQRTVNVRTRDNRQLGERDLAESVQRLLELQNARVP 691


>gi|18313148|ref|NP_559815.1| prolyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|74580888|sp|Q8ZVQ9|SYP_PYRAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18160660|gb|AAL63997.1| prolyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 488

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 160/436 (36%), Gaps = 69/436 (15%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H L+    +  +    KG Y W P G K   NV  +IR+  + TG  E+  P     + +
Sbjct: 24  HWLLREAELYDVRYPVKGAYVWRPYGMKIRRNVENLIRKFHDETGHEEVLFPVFIPYEFF 83

Query: 81  -VESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             ES     + KE+  ++      + ++  PT E  +  + +  I+ Y++LP   YQI  
Sbjct: 84  GKESQHIKGFEKEVFWVSKGGEAGERLVLRPTSETAIMPMVKLWIQDYKDLPLRVYQIVS 143

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +    ++R RE  M                                        
Sbjct: 144 VFRAETKMTHPMIRLREISM---------------------------------------- 163

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                    +H      +  E QV          +      FD++     I ++      
Sbjct: 164 ------FKEAHTVHADKEDAERQV-------REAVEIYKRIFDEMCLAYLINKRPEWDKF 210

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A ++                  R +++G + Y GT ++     T+  ADG        SY
Sbjct: 211 AGAEYTIAFD------TILPDGRSLQIGTVHYLGTNFTKVFEVTYLDADGTRKLAHTTSY 264

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK 374
           GI + R +AA++ +  D  G   P  +AP ++ +I I   ++          +   RL++
Sbjct: 265 GI-SERSIAAMLITHGDDGGTTLPPKLAPIQVVVIPIYYGEEEAPLVMPLVRETANRLNE 323

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V+ D+   +  G +F   +L G PL+V +G + V   +  I  R T  +  +S+ E
Sbjct: 324 AGIRVYVDERADKTPGWKFYYWELKGVPLRVEIGKRDVEKRQAVIARRDTLEKYAVSINE 383

Query: 434 VINYASHRFSNNRPVL 449
           +++       +    L
Sbjct: 384 LVDAVKQLMKSVEENL 399


>gi|327488783|gb|EGF20582.1| proline--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 616

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+       +I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNIKDEEALALTNQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|296271847|ref|YP_003654478.1| threonyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096022|gb|ADG91972.1| threonyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 602

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 149/437 (34%), Gaps = 41/437 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ +L+E   RD      +L L T        G+  WLP G +    +  I+ +     G
Sbjct: 197 YVKMLEEAKKRDHRKLGTELELFT-FSDDVGAGLPMWLPNGARLRSKLEHILYKAHRVRG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  + +W  SG   +Y + M      +++     P +      IF++ + SY
Sbjct: 256 YEPVRGPEILKSKMWDISGHNANYSQNMYYTT-IDEQQYAMKPMNCVGHIQIFKNSLVSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP   ++  +  R E+     G+ R REF   D++ F  T +  K    ++      +
Sbjct: 315 KDLPKKLFEYGVVHRHEMSGAMHGLFRVREFTQDDSHIF-CTQDQMKDVIFEVLEFVDAV 373

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                 K   +   + P        F      G       K+                  
Sbjct: 374 LKLFDFKY-EIEVSTKPEKAIGDDMFWEKTTKGIMDALDEKNITYGIDEGGG-------- 424

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + K+ D++    +     +++               A +  
Sbjct: 425 ------------AFYGPKIDIKILDAIGRKWQCGTVQVDMNLPSR--------FEAEYIN 464

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G K+  V +    +G+      ++     G+    P  +AP ++  + I        +
Sbjct: 465 EKGEKEQPVMIHRAILGSFERFIGILTEHCAGEF---PFVIAPTQVIFVPIA---DTHNE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L +   D    +M E +  +  +A+    P+ V++G + V +  V ++ R  
Sbjct: 519 YAKELQNELLQNSMDSKIFNMNESLNKRIRMAEKQRVPMIVVIGDEEVENKTVALRDRRK 578

Query: 424 GIREDMSLEEVINYASH 440
             + +M   E I   + 
Sbjct: 579 REQSNMGKTEFIQMLNE 595


>gi|15790739|ref|NP_280563.1| threonyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|10581281|gb|AAG20043.1| threonyl-tRNA synthetase [Halobacterium sp. NRC-1]
          Length = 650

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 146/446 (32%), Gaps = 42/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y     +   RD      ++ L + +      G+  + P G+  L  ++  +R   +
Sbjct: 238 LQEYLARREEAKERDHRKLGREMDLFS-IPDVTGPGLPLYHPNGKTVLRELSEYVRGLNS 296

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L   +LW +SG YD+Y  +M  L D ND+     P +      IF    
Sbjct: 297 EMGYDEVETPHLFRTELWKQSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFNEGS 355

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  +++    +R E R    G+ R   F + D + F    +  +    ++  + 
Sbjct: 356 WSYRDLPVRYFEDGKVYRKEQRGELSGLSRVWAFTIDDGHVF-ARADQIEAEVRRLMDTI 414

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +     L    +   + P     S +    ++    +V   +       P +      
Sbjct: 415 TEVLDTFDLDY-EVALATRPEKSVGSDDIWEQSERQLREVLDQQGVDYDVEPGDG----- 468

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +    D+L  +       ++                  
Sbjct: 469 ---------------AFYGPKIDFGFEDALGRSWDGPTVQLDFNMPDR--------FDLE 505

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+D   H  V +     G+      V+   ++G+   W   +AP ++ ++ +   +  
Sbjct: 506 YTGSDNDAHQPVMIHRALYGSYERFFMVLIEHYNGRFPTW---LAPEQVRILPVTDDN-- 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L      V  +D    +G +   A     P  ++VG        V ++ 
Sbjct: 561 -LGYAHRVKNELGD--YRVEVEDRDWTVGKKIQQAHDDNVPYMLVVGDDEEDADAVSVRD 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     + + L E   +        R
Sbjct: 618 RQEREGKGVDLAEFRAHLDSEVDGKR 643


>gi|168485970|ref|ZP_02710478.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183570860|gb|EDT91388.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 617

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLTPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|260773310|ref|ZP_05882226.1| prolyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612449|gb|EEX37652.1| prolyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 548

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/199 (48%), Positives = 133/199 (66%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRNEVSSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  +G + SY  M  +Y + F R+GL   P+ A++G IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKDGLEKSYQAMHDAYCKAFDRMGLDYRPVLADTGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            SHEF VLA++GE  +  S
Sbjct: 181 GSHEFHVLAESGEDIIAFS 199



 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I        A   D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 341 DGKHYFGINWGRDVELAKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK   ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 401 NCGVLDSNGKHTILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 460

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A E +YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 461 SERVQQAAETLYAELTAAGIEVLFDDRKERPGVMFSDMELIGIPHTIIIGDRSMDEGNFE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            KHR +G +  + +  ++++   + 
Sbjct: 521 YKHRRSGEKSAVPMANMVSFIHEQL 545


>gi|256832610|ref|YP_003161337.1| threonyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256686141|gb|ACV09034.1| threonyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 673

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 140/452 (30%), Gaps = 54/452 (11%)

Query: 16  RDAEIASHK-LMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            +AE   H+ L +   +     +   G+  + P G      +    R      G   ++ 
Sbjct: 257 AEAERRDHRRLGVEMDLFSFPDEMGSGLAVFHPRGGVVRLEMEEYSRRRHIEAGYSFVNS 316

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y + M      +++                 P +  +   IF 
Sbjct: 317 PHITKGRLYEVSGHLDWYREGMYPAMHMDEERDADGTLRKQGQDYYLKPMNCPMHNLIFD 376

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E  K       
Sbjct: 377 ARGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTKEQMKDELTNAL 435

Query: 179 VSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              L +    GL    +   +  P     + E    A     +V         P P    
Sbjct: 436 TFVLDLLKDYGLDDFYLELSTRDPEKSVGTDEIWDEATRTLEEVAQDSGLELVPDPG--- 492

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      + +  D++    ++S   ++    F    K+   
Sbjct: 493 -----------------GAAFYGPKISVQAKDAIGRTWQMSTIQLD----FNLPEKF--- 528

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               ++ ADG     V +     G++    AV+   + G+  +W   +AP ++  + +  
Sbjct: 529 -DLEYQAADGTRQRPVMIHRALFGSIERFFAVLLEHYAGQFPVW---LAPVQVLAVPVA- 583

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D      A L   G     DD  ++   +   A     P  VI G +      V
Sbjct: 584 --DAFNDYLGDFVAELRTRGVRAELDDSSDRFPKKVRNASTSKVPFTVIAGGEDEQAGAV 641

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             ++R       +  E+ I       S    V
Sbjct: 642 SFRYRDGSQENGIPREQAITRILESISTRAQV 673


>gi|296877243|ref|ZP_06901283.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296431763|gb|EFH17570.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 616

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/212 (45%), Positives = 137/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y RIF R G+    +  + G +GG  S EF+ 
Sbjct: 181 YERIFTRSGIDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+       +I   L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLIPVNIKDEASLALTNQIEESLVNKGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + G +F+ +DL+G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 561 RAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|284044947|ref|YP_003395287.1| prolyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283949168|gb|ADB51912.1| prolyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 560

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/221 (42%), Positives = 133/221 (60%), Gaps = 2/221 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S Y LP  ++ P DAE  SH+LM+R G+I Q   G++++LP G +    V  IIREE 
Sbjct: 3   RLSSYLLPTEKQAPADAEAISHQLMVRAGLIRQLGAGLWTYLPAGWRVHRRVEQIIREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P L  A+ W  +GR +    E+ +L DR    M+   THEE++T      
Sbjct: 63  DAIGGQEMLMPLLNPAEPWRRTGRIE--IDEIFKLEDRKGTEMVLAMTHEEIVTTHVAQV 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP   YQIQ+K RDE RPR GV+R+REF MKD+YSFD    G + SY K  V+Y
Sbjct: 121 VRSYRDLPQILYQIQVKERDEPRPRAGVLRTREFRMKDSYSFDRDEAGLEESYAKHIVAY 180

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            RIF R GL+   + ++ G +GG  +HE++     GE +V 
Sbjct: 181 DRIFERTGLEWYRVESDVGMMGGTAAHEYMAPCAAGEDEVA 221



 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 91/179 (50%)

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              +  D++  +     + IEVG+IF  GT+YS  + A+F    G    V MG YGIG  
Sbjct: 377 RAVEPGDTVGGHPIRIEKAIEVGNIFKLGTRYSSALGASFLDESGAQQLVTMGCYGIGPA 436

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R+VAA +E   D  GI WP ++APF   L+ I   +   R   +++Y  L   G DV +D
Sbjct: 437 RIVAAAVEQYADDAGIAWPRALAPFDAELVVISRGESEERAFADRLYEELKATGLDVLYD 496

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D     G +FA A+LLG PL+V VG + ++  ++E++ R    R  + LE         
Sbjct: 497 DRDAGPGEKFADAELLGAPLRVTVGKRTLAAGELEVQLRRGRERRSVPLEGAAEAVHEL 555


>gi|170290551|ref|YP_001737367.1| threonyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174631|gb|ACB07684.1| threonyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 638

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 147/442 (33%), Gaps = 34/442 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++ +   +   RD  +   +L L +        G+  W P G +    +   +     
Sbjct: 223 LEEFLVRREEIRKRDHRVVGPQLDLFSMPSEIIGPGLILWHPKGARVRRIIEDFLVRVHL 282

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  + LW  SG  + Y   M    ++        P +      I+ S  
Sbjct: 283 SRGYELVYSPHIAYSTLWKISGHLNYYRDYMYVF-EKEGIEHAVKPMNCPFHILIYNSKR 341

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   +++   +R E      G++R+R F   DA+ F  T E  +     +    
Sbjct: 342 RSYRELPLRLFELGTVYRFEKSGVLHGLLRARGFTQDDAHIF-TTREDLEDEVLGLIDLN 400

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    G + + +   +               D      +   D       S       
Sbjct: 401 EYLMRSFGFEELKVEIST--------------WDPRRRSEYMGSDEDWSAAQSSLEGALR 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                   E      A      + KL DS+    ++S   I+      F  KY       
Sbjct: 447 RKGYR--YEIMEGEAAFYGPKIDMKLVDSIGREWQLSTIQIDFNLPRRFDLKYVKA---- 500

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               DG ++H V +    +G++     ++   + G   +W   +AP ++ ++ +    Q 
Sbjct: 501 ----DGSEEHIVMIHRALLGSIERFFGILLEHYAGNFPLW---IAPIQLRILPV---SQA 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E++ A +S  G           +  +   ++L   P+  I+G + +   ++ ++ 
Sbjct: 551 QEGRAEELLALMSARGVRADIRKAESTLSYRIRESELEKIPIVAIIGEREMKTGEISVRV 610

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           +  G    MSLE+         
Sbjct: 611 KGKGNLGSMSLEDFFRTFGKEL 632


>gi|157150969|ref|YP_001451117.1| prolyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083519|sp|A8AZA7|SYP_STRGC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157075763|gb|ABV10446.1| prolyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 616

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L+LR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGDDLFKLKNREGSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVTYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  +    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSEIDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVAGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGNGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+AT    +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNATVLDENGRAVPLVMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      +KI   L   G +V  DD  E++G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEESLALTDKIEESLVGAGYEVLVDDRNERVGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + +G   ++  + +I   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKASGDTIEVHADNLIETLS 612


>gi|169236481|ref|YP_001689681.1| threonyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|73921305|sp|Q9HP27|SYT_HALSA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229470722|sp|B0R6G6|SYT_HALS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167727547|emb|CAP14335.1| threonine--tRNA ligase [Halobacterium salinarum R1]
          Length = 640

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 146/446 (32%), Gaps = 42/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y     +   RD      ++ L + +      G+  + P G+  L  ++  +R   +
Sbjct: 228 LQEYLARREEAKERDHRKLGREMDLFS-IPDVTGPGLPLYHPNGKTVLRELSEYVRGLNS 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L   +LW +SG YD+Y  +M  L D ND+     P +      IF    
Sbjct: 287 EMGYDEVETPHLFRTELWKQSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFNEGS 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  +++    +R E R    G+ R   F + D + F    +  +    ++  + 
Sbjct: 346 WSYRDLPVRYFEDGKVYRKEQRGELSGLSRVWAFTIDDGHVF-ARADQIEAEVRRLMDTI 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +     L    +   + P     S +    ++    +V   +       P +      
Sbjct: 405 TEVLDTFDLDY-EVALATRPEKSVGSDDIWEQSERQLREVLDQQGVDYDVEPGDG----- 458

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +    D+L  +       ++                  
Sbjct: 459 ---------------AFYGPKIDFGFEDALGRSWDGPTVQLDFNMPDR--------FDLE 495

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+D   H  V +     G+      V+   ++G+   W   +AP ++ ++ +   +  
Sbjct: 496 YTGSDNDAHQPVMIHRALYGSYERFFMVLIEHYNGRFPTW---LAPEQVRILPVTDDN-- 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L      V  +D    +G +   A     P  ++VG        V ++ 
Sbjct: 551 -LGYAHRVKNELGD--YRVEVEDRDWTVGKKIQQAHDDNVPYMLVVGDDEEDADAVSVRD 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     + + L E   +        R
Sbjct: 608 RQEREGKGVDLAEFRAHLDSEVDGKR 633


>gi|288801976|ref|ZP_06407417.1| proline--tRNA ligase [Prevotella melaninogenica D18]
 gi|302347070|ref|YP_003815368.1| proline--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|288335411|gb|EFC73845.1| proline--tRNA ligase [Prevotella melaninogenica D18]
 gi|302151118|gb|ADK97379.1| proline--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 493

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 175/463 (37%), Gaps = 88/463 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +I Q + +G     P G    + + A + +    TG 
Sbjct: 5   LKEMTKRADNYSQWYNDLVIKADLIEQSAVRGCMVIKPYGYAIWEKIQAQLDKMFKETGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    + ++ +I  
Sbjct: 65  QNAYFPMLIPKSFLSREAEHVKGFAKECAVVTHYRLKATEDGNAVQVDPNAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHAT- 182

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +    K   + LR                            V AD  E  +      
Sbjct: 183 ---REEAEKEAQTMLR----------------------------VYADFAEKWLAVPVVQ 211

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               + SE   F   +   +I                               + ++ G  
Sbjct: 212 G---VKSETERFAGALDTYTIEAM------------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKIAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQ 403
           ++ ++ I   ++  +   +K+     +L  +G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVVIVPIFKGEEQLKALTDKLQPVIDQLRALGITVKYDDADNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +G + + ++ +E+  R T  +E +S + ++    +     +
Sbjct: 364 LAMGGRDLENNTIEVMRRDTLEKESVSFDGIVERIKNLLDEIQ 406


>gi|167045283|gb|ABZ09941.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG9P22]
          Length = 479

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 154/433 (35%), Gaps = 70/433 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           +++++T ++     KG+    P G    +++   + ++   TG     +P L    L   
Sbjct: 21  QVVIKTELVDYAPVKGLIVLRPDGYSIWESIKESLDKKLKETGHRNGFLPVLIPESLLAK 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E   ++    E+  +    +  +       PT E +   +F   I+S+R+LP        
Sbjct: 81  EKEHFEGLNPEVFWVTQSGNSEIGDRLALRPTSETLAYSLFSKWIRSWRDLPLKMNFWNS 140

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E++     +R+ EFL ++ ++   T    K    K     L ++     K+I    
Sbjct: 141 ALRAEIKGTKPFLRTSEFLWQEGHTVHAT----KDEAEKEVADILELYK----KTIEEEL 192

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S          E   F    + D                            
Sbjct: 193 AVPVITGKKS----------EKDKFVGAVYTDTL-------------------------- 216

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E+     + +++G   + G  +S P    +   +  + +    S+
Sbjct: 217 ---------------ESLMPDGKALQMGTSHFLGQNFSKPFDVKYLDENNVETFAWQTSW 261

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSK 374
           G+ + R++  +I    D KG++ P  VAP ++ +I I       +       +I   LS 
Sbjct: 262 GV-SWRLIGGMIMIHGDDKGLVLPPKVAPIQVVIIPIYYSNDEKENVLQTACQIKDSLSN 320

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               V  DD  +   G +F   ++ G P+++ +G K ++ ++  +  R T  +  + ++ 
Sbjct: 321 NDIRVHLDDREQLTPGFKFNDWEMRGIPIRIEIGPKDIAKNQAVLVRRHTQTKTSIEMDS 380

Query: 434 VINYASHRFSNNR 446
           +    S    N +
Sbjct: 381 LTEKISSELKNIQ 393


>gi|291525280|emb|CBK90867.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           rectale DSM 17629]
 gi|291529262|emb|CBK94848.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           rectale M104/1]
          Length = 657

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 154/445 (34%), Gaps = 43/445 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAI 67
           E   +A+   H  + R   +        +G+   +P G K +  +   I + +++  G +
Sbjct: 231 ERMEEAKKRDHNKLGREMELFTTVDVIGQGLPLMMPKGTKMIMKLQRWIEDLEDKEWGYV 290

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               P +  +DL+  SG +D Y   M  L     D  ++ M   P        ++++   
Sbjct: 291 RTKTPLMAKSDLYKISGHWDHYLDGMFVLGDPEKDGEEEVMALRPMTCPFQYYVYKAKQH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP+   +    FR+E      G+ R R+F + + ++  + P+  +      F    
Sbjct: 351 SYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNV-IRPDQCEEELKACFNLNR 409

Query: 183 RIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +   LGL+  +  R                  D   T+ +   D           +   
Sbjct: 410 YVLKVLGLENDVTYRLSK--------------WDPKNTEKYLGDDEYWNSTQEVLRNI-- 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +I  N    +     A      + +  +   +   +    ++           +      
Sbjct: 454 LIEENVPFVEADGEAAFYGPKIDIQAKNVYGKEDTMVTIQLDCA--------IAENFDLY 505

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +G K     +    +G      A +   + GK   W   + P ++ ++ I    + 
Sbjct: 506 YIDQNGDKIRPYIIHRTSLGCYERTLAWLIEHYAGKFPTW---LCPEQVRVLPI---SEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L +   DV  D+  E+IG +   A +   P  ++VG+   +D  V ++ 
Sbjct: 560 YADYAKKVADELKRNDVDVTVDNRAEKIGYKIREARMDKLPYMLVVGADEEADGTVSVRS 619

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G      L + I+         
Sbjct: 620 RFEGNEGVKPLSDFIDQICKEIRTK 644


>gi|295396075|ref|ZP_06806258.1| threonine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971016|gb|EFG46908.1| threonine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 667

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/471 (16%), Positives = 145/471 (30%), Gaps = 61/471 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
            SK  L   Q    +AE   H+     L L +    +   G+  + P G      +   +
Sbjct: 233 ASKDDLKAYQVRIAEAERRDHRRLGAELDLFS-FPDELGSGLPVFHPKGGVIKREMEDYV 291

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRNDK------AMI 105
           R      G   +  P +    L+  SG    YG+ M          D N +         
Sbjct: 292 RARHIEEGFEYVGTPHISKEALYYTSGHLPYYGENMFPAMQVDEQRDENGEIIKQGQPYR 351

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFD 164
               +  +   I+RS  +SYR+LP   ++    +R+E      G+ R R     D++S+ 
Sbjct: 352 LKAMNCPMHNLIYRSRGRSYRDLPLRLFEFGTVYRNEASGVVHGLTRVRALTQDDSHSYV 411

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------LSHEFIVLADTGE 218
              E +      +    L +    GL    +   +    G        S E    A    
Sbjct: 412 A-VEDAASEIKHLLDFMLSLLRDFGLDDFYLELSTRDAVGKKANKFIGSDEQWDEATRTL 470

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +V  +      P P                       A      + +  D++    ++S
Sbjct: 471 EEVARATGLELVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMS 510

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
              ++                  ++ ADG +   V + S   G++     V+   + G  
Sbjct: 511 TVQLDFNQPER--------FDLEYQAADGSRKRPVMIHSAKFGSIERFLGVLTEHYAGAF 562

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            +W   ++P +  ++ +           E+I  +L   G  V  DD  ++   +   A  
Sbjct: 563 PVW---LSPVQAIMVPVA---DEFLPYVEEIAQKLKAHGIRVEIDDSTDRFPKKIRNASK 616

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
              P  +I G +      V  + R       + +++ +            V
Sbjct: 617 SKVPYTLIAGGEDRDAHAVSFRFRDGSQENGVPVDQAVERIVDAIKTKAQV 667


>gi|291550699|emb|CBL26961.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           torques L2-14]
          Length = 650

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 146/449 (32%), Gaps = 42/449 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREE 60
           K  L  L+E    A+   H  + R   +        +G+   +P G   +  +   I +E
Sbjct: 227 KEHLTQLEE----AKKRDHNKLGREMKLFTTVDVIGQGLPLIMPNGVIIMQELQRWIEDE 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIF 118
           + + G I    P +  +DL+  SG +D Y + M  L D   + +     P        ++
Sbjct: 283 EAKRGYIRTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYYVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++   SYR+LP  + +    FR+E      G+ R R+F + + +   + P+     +   
Sbjct: 343 KAEQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLV-VRPDQMVKEFKDC 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                     LG++                   +   D  +T+ +     +         
Sbjct: 402 IALAQYCLQVLGVEEDVTY-------------HLSKWDPTDTKKYIGAPEVWEETEGHIR 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               +  LN    +     A      +    +   +   +     +              
Sbjct: 449 TM--LQELNIPFVEDVGEAAFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ-------- 498

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   +G K     +    +G      A +   + G    W   + P ++ +I I  
Sbjct: 499 FDMYYIDENGDKQRPYIIHRTSVGCYERTLAWLIEKYAGMFPTW---LCPEQVRVIPI-- 553

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   K+ A+L +       D   E++G +   A L   P  +IVG+K   + KV
Sbjct: 554 -SDKYNDYAAKVEAQLKEANIRCSVDGRSEKMGYKIREARLNRVPYLLIVGAKEEEEQKV 612

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G      L E I       +  
Sbjct: 613 SVRSRYLGDEGSKDLGEFIEAIKDEIAKK 641


>gi|259503119|ref|ZP_05746021.1| proline-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259168985|gb|EEW53480.1| proline-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 578

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 104/244 (42%), Positives = 143/244 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +ENP DAE  SH +M R G I+Q S G++++LPL  + +  V  II+EE
Sbjct: 1   MKQSKLLIPTKKENPSDAEALSHIMMERAGYIYQISAGVWAYLPLAYRVIRKVKGIIQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA EM  P++  ADLW ++GRY++YG  + +  D ND+  I GPT EE MT+I R 
Sbjct: 61  MEKAGAYEMETPSMLPADLWRQTGRYEAYGDTLYKFKDHNDREYILGPTDEEAMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFR+E RPR+GV+R +EF M DAYSF    EG   +Y     +
Sbjct: 121 SVKSYKKLPLVVYQITDKFRNEPRPRYGVLRGKEFSMLDAYSFAADEEGLDEAYQAQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGGD S EF   A+ GE  +  +       +      FD
Sbjct: 181 YHNIFDRAGLHYKVILADSGTIGGDNSQEFSAPAEIGEDVIVYTDGGYAANLEKATAKFD 240

Query: 241 DIIS 244
            +  
Sbjct: 241 AVQQ 244



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 2/224 (0%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-N 274
            GE     + +++   +       DD     +             D  N +  +  P+  
Sbjct: 342 VGEDVKILADNYVKVLVNMACGANDDGHHYVNANIDRDFRVDQFGDFRNVQEGEIAPDGY 401

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                 GIE+GHIF  GT YS  + A     +G+   + MG YGIG  R+++AV E + D
Sbjct: 402 PIKFTNGIEIGHIFKLGTGYSKKLGAQVLDKNGRLVDMIMGCYGIGVTRMLSAVAEQNAD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G++WPDS+APF + +I + A          ++  +L+  G +V  DD  E+ G +FA 
Sbjct: 462 ENGLVWPDSIAPFDVHVIPVNAKKDEQMAMANELEQQLTAAGYEVLVDDRKERAGVKFAD 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +DL+G PL+V VG K  +D  VE+K R TG   ++  EE++N  
Sbjct: 522 SDLIGIPLRVTVGKK-AADGIVEVKIRKTGETLEVKQEELVNTV 564


>gi|225166271|ref|ZP_03727968.1| Proline--tRNA ligase [Opitutaceae bacterium TAV2]
 gi|224799484|gb|EEG18016.1| Proline--tRNA ligase [Opitutaceae bacterium TAV2]
          Length = 302

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/279 (38%), Positives = 161/279 (57%), Gaps = 7/279 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+YF+P L+E+P DAEIASHKL++R G++ + S G+Y+++PLG +AL  ++ I REE 
Sbjct: 3   RWSQYFIPTLKESPADAEIASHKLLVRAGLVRKLSGGLYTFMPLGLRALHKISQICREEI 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVM 114
           +  G IE+ +P L  A+LW +  R+ +  + M R     D          + GPTHEE++
Sbjct: 63  DAGGGIELWMPHLHPAELWEQGPRWAAAREIMFRADSAGDGKRAPRDPEFVLGPTHEEII 122

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           T + +S I SYR+LP  FYQI  KFR+E+RPR+G+MR+REF+M DAYSFD+  + +  +Y
Sbjct: 123 TPLVKSEISSYRDLPKNFYQIATKFRNEIRPRYGLMRAREFVMMDAYSFDVDDDSAVKAY 182

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             M  +Y + F RLG+++I + A++G +GG  SHEF+V A+ G+  V  S          
Sbjct: 183 FAMKTAYEKFFARLGVQAIAVEADTGVMGGSYSHEFMVPAEVGDDDVIYSDAGYAANREK 242

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             +            E       AT  V      +  P 
Sbjct: 243 ATSALVPAEFAPPPPEAPAPVEFATPGVTTIAHLEDEPY 281


>gi|269956448|ref|YP_003326237.1| threonyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305129|gb|ACZ30679.1| threonyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 672

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 141/451 (31%), Gaps = 53/451 (11%)

Query: 13  ENPRDAEIASHKLM-LRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +AE   H+ + +   +   H     G+  + P G      +   +R+     G   
Sbjct: 254 ERLAEAERRDHRRIGVEQDLFSFHENVGSGLPLFHPKGGVIKRVMEDYVRQRHIEEGFSY 313

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI--------YGPTHEEVMTDIFRS 120
           +  P +   DL+  SG    YG  M    + +D                +  +   I+ S
Sbjct: 314 VGTPHISKEDLFYTSGHLPYYGDTMFPSMEFHDDDHPDAPALKYRLKAMNCPMHNLIYSS 373

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP   ++    +R E      G+ R R     D++S+ +T E +      +  
Sbjct: 374 RGRSYRELPIRLFEFGSVYRYEKGGVVQGLTRVRGLTQDDSHSY-VTQEQAPGEVTHLLD 432

Query: 180 SYLRIFHRLGLKSIPMRAESG----PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
             L +    GL    +   +     P     S E    A     QV         P P  
Sbjct: 433 FMLSVLKDFGLNDFYLELSTRDDSKPDKFVGSDEEWAKATAILEQVGRDSGLELVPDPG- 491

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + +  D++    ++     +      FG +Y+
Sbjct: 492 -------------------GAAFYGPKISVQAKDAIGRTWQMGTVQYDFNQPARFGLEYT 532

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            P        DG +   V + S   G++     V+   + G    W   +AP ++  + +
Sbjct: 533 AP--------DGTRQQPVMIHSAKFGSIERFMGVLIEHYAGSFPAW---LAPVQVLAVPV 581

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +      + + A+L+  G     D   ++   +   A     P  +I G +     
Sbjct: 582 A---EAFDGYLKDVVAQLTARGIRAEVDLSDDRFAKKIRNASKEKVPFVLIAGGEDADAG 638

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  ++R       + + E +        + 
Sbjct: 639 AVSFRYRDGRQDNGVPVAEAVERIVAAVRDR 669


>gi|13358098|ref|NP_078372.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761869|ref|YP_001752619.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920446|ref|ZP_02690665.2| threonyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508529|ref|ZP_02958053.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701866|ref|ZP_02971526.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|13959578|sp|Q9PPV6|SYT_UREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083629|sp|B1AJH5|SYT_UREP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|11271125|pir||H82878 threonyl-tRNA synthetase UU534 [imported] - Ureaplasma urealyticum
 gi|6899538|gb|AAF30947.1|AE002152_6 threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827446|gb|ACA32708.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902899|gb|EDT49188.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675966|gb|EDT87871.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701170|gb|EDU19452.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 580

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 165/444 (37%), Gaps = 35/444 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  LQE   RD       L L T   +   +G+  WLP G    + V   I E + +  
Sbjct: 168 YLKDLQERKERDHRKIGKDLNLFT-FNNLAGQGLPIWLPNGTIIKNQVQKFINEVEFQFN 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y   +      +++ ++  P      T ++ + ++SY
Sbjct: 227 FDTVITPILGSIDLYKTSGHWDHYKDNIFSPVQIDNEILVLRPMTCPHHTLVYSNELRSY 286

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G  R RE +++D + F    +  +H     F      
Sbjct: 287 RSLPIRLSEHSILHRYESSGGLTGFERVREMILEDCHVF-CRFDQIEHEVINAFKMIQEA 345

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG+K+  +                 L D  + + +     M     +       +  
Sbjct: 346 QEGLGIKTFEIHLS--------------LNDPNDKEKYYDDPQMWEQSQNVLRKM--LKD 389

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            N   ++     A      + ++   L     VS   ++    F    +++L    T+  
Sbjct: 390 HNIPYKEMVGEAAFYGPKIDFQVKTVLNRIITVSTIQLD----FLLPNRFNL----TYIN 441

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    V +    IG    + A++     G   I P  ++P ++ +I +   + +  D
Sbjct: 442 ESNEQSVPVMIHIGIIGTYERLLAILLEQTKG---ILPLWLSPIQVVIIPVN--ENLHTD 496

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRL 422
             +++  +L K       D   E++  +   A +   P Q+++G + + ++K V  +   
Sbjct: 497 YVKELNIKLRKHLIRSNVDLRNERLSKKIREAQIQKIPYQIVIGDEEIKNNKMVTYRCYG 556

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +     +S+ + IN   ++    +
Sbjct: 557 SEKTTTVSITDFINMLENKIRLKK 580


>gi|72547539|ref|XP_843247.1| threonyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|323363762|emb|CBZ12768.1| putative threonyl-tRNA synthetase [Leishmania major strain
           Friedlin]
          Length = 787

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/518 (15%), Positives = 160/518 (30%), Gaps = 94/518 (18%)

Query: 9   PILQENP---RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           P+L E      +A    H+++ R       H+ S G   WLP G +  + +   +R++  
Sbjct: 271 PMLTEWKTIQEEAAKRDHRVIGRQQNLFNFHEVSPGSAFWLPHGARIYNTLVEFLRKKYR 330

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P + S+ LW+ SG ++ Y   M        +     P +      +F S  
Sbjct: 331 RCGFQEVISPNMYSSKLWMVSGHWEKYADSMFCTKCEK-EDFGLKPMNCPGHCIMFASQP 389

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+ LP  +    +  R+EL     G+ R R F   DA+ F    + +     +M    
Sbjct: 390 HSYKELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQM-QFL 448

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++  LG K       + P     S      +++           +   +P        
Sbjct: 449 SDVYGVLGFKFYFYH-STRPANKLGSDALWDQSESYLRTALNRFCGIPEELPDPLHPDQR 507

Query: 242 IISLNSI-------------------------------VEQWTAPYAATSDVHNEKLFDS 270
                                                   +     A      +  + D+
Sbjct: 508 FHYDGKPDSVKKMKALMKKAERSEDPNAWKGPTNGGDGWIENVGDGAFYGPKIDIVVEDA 567

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP--------------------------------- 297
           L    + +   ++      FG KY+LP                                 
Sbjct: 568 LRRRHQCATIQLDFNLPSRFGLKYTLPAAEKDETTVGPTEKQRHADPAPTASSPAVAEGE 627

Query: 298 -------MSATFKG-------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                    A  +           +   V +    +G++    A++     G    WP  
Sbjct: 628 SKPKPGKYEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAILCEHFGGD---WPFW 684

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           ++P ++ ++ + A +    +  +++   +   G  V  D+    +  +   A+   +   
Sbjct: 685 LSPRQVMVVPVSASN---YEYSQQVRDTIHDAGFHVDVDNGAATLDKKIRNAEKARYNFI 741

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++VG +    + V I+ R      + SL E + +    
Sbjct: 742 LVVGQQEQDATGVSIRARGEKRLGNKSLVEAVQWFKEL 779


>gi|328907347|gb|EGG27113.1| threonine--tRNA ligase [Propionibacterium sp. P08]
          Length = 684

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 153/462 (33%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 237 ASREDLVAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVV 296

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G + +  P +    L+  SG    Y   M        +R+++            
Sbjct: 297 ARHMEAGFVFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEQGNVTRTGQEYYL 356

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 357 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 415

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +   GG    E  + +D          
Sbjct: 416 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR-EGGSAKEEKFIGSD---------- 464

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              +    + +T      +    +       A      + ++ D++    ++S    +  
Sbjct: 465 ---EDWQAATDTLDQVCRNTGLQLVSDPGGAAFYGPKVSVQVKDAIGRTWQMSTIQYDFN 521

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 522 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 570

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D   K    L   G  V  D   ++ G +   A     P  +
Sbjct: 571 SPVQVRLVPVA---EAFNDYVTKFAEVLESRGIRVETDLSSDRFGKKIRNASKEKVPFVL 627

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       ++ +E +   +     +R
Sbjct: 628 IAGGEDAEAGAVSFRLRDGSQVNGVARDETVRIIAAWNDEHR 669


>gi|313837083|gb|EFS74797.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314927888|gb|EFS91719.1| threonyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314971856|gb|EFT15954.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 689

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 153/462 (33%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREDLVAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVV 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G + +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFVFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEQGNVTRTGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +   GG    E  + +D          
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR-EGGSAKEEKFIGSD---------- 469

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              +    + +T      +    +       A      + ++ D++    ++S    +  
Sbjct: 470 ---EDWQAATDTLDQVCRNTGLQLVSDPGGAAFYGPKVSVQVKDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D   K    L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTKFAEVLESRGIRVETDLSSDRFGKKIRNASKEKVPFVL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       ++ +E +   +     +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQVNGVARDETVRIIAAWNDEHR 674


>gi|149030652|gb|EDL85689.1| threonyl-tRNA synthetase-like 1, isoform CRA_a [Rattus norvegicus]
          Length = 617

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 138/439 (31%), Gaps = 55/439 (12%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
                H+ S G   +LP G +  + + A IR E  R G  E+  PTL S  LW +SG ++
Sbjct: 209 ELFFFHELSPGSCFFLPRGTRIYNALVAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWE 268

Query: 88  SYGKEMLRLADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            Y   M  L                       +   P +      +F    +S+R LP  
Sbjct: 269 HYRAHMFSLKPPGTDGVDSSQSGHPARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVR 328

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R E      G+ R   F   DA+ F   P   +            ++  LG 
Sbjct: 329 LADFGVLHRAEASGSLGGLTRLWRFQQDDAHIFCA-PSQLEAEIRGCLDFLRSVYSVLGF 387

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P G          A+    Q            P +               
Sbjct: 388 SF-HLALSTRPPGFLGEPHLWDQAEKVLQQALEEFGEPWNLNPGDG-------------- 432

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      +  L D+L    +     ++    F    ++       +KG  G   
Sbjct: 433 ------AFYGPKIDVHLHDALGRPHQCGTIQLD----FQLPLRF----DLQYKGPAGAPE 478

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  +  V+  S  G    WP  ++PF++ +I ++   +   D   ++ 
Sbjct: 479 CPVLIHRAVLGSVERLLGVLAESCGG---RWPLWLSPFQVVVIPVRTEQE---DYARQVQ 532

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G     D D G  +  +   A L  +  Q +VG +  S   V ++ R      +
Sbjct: 533 QCLQAAGLVSDLDADCGLTLSRRVRRAQLAHYNFQFVVGQREQSQMSVNVRTRDNRQLGE 592

Query: 429 MSLEEVINYASHRFSNNRP 447
             L E +           P
Sbjct: 593 RGLAESVQRLLELQDARVP 611


>gi|332523321|ref|ZP_08399573.1| proline--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314585|gb|EGJ27570.1| proline--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 617

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGIYAYLPLANRTIEKLKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNDEDLDITYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL+   +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +I +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVTGANKDGYHLIGVNPERDFHAEYVDIREVKEGEISPDGHGV--LRFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  + AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSKSLGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRFAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D   K+   L   G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPEELAPFDVHLITVNTKDQDAQDLTSKVEHDLMTKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G P+++ VG K  S+  VEIK + +G   ++  + +I   
Sbjct: 572 IGLPIRITVGKK-ASEGIVEIKIKASGDSIEVHADNIIETL 611


>gi|332359971|gb|EGJ37785.1| proline--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 616

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGILKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPLIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEALTLTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|38233973|ref|NP_939740.1| threonyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|73919783|sp|Q6NGW2|SYT_CORDI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|38200235|emb|CAE49919.1| threonyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 687

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 148/458 (32%), Gaps = 51/458 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y L + +   RD      +L L +    +   G   + P G      +    R    
Sbjct: 252 LEEYQLMMAEAEKRDHRRLGAELDLFS-FPDEIGSGFPVFHPNGGIVRLEMEEHSRRRHI 310

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTH 110
             G   ++ P +   DL+ +SG  D Y   M          D         +     P +
Sbjct: 311 NAGYSFVNTPHITKGDLFKKSGHLDFYADGMFPPMQLDGEVDEEGNVVKQAQDYYAKPMN 370

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 371 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQ 429

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +     +    + +    GL    +   +  P     S E    + +   +V       
Sbjct: 430 LEQELTSVLDFIISLLRDYGLDDFYLELSTKDPNKFVGSDEIWEKSTSILQRVATKSGLE 489

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P P+                      A      + +  D++    ++S   ++    F
Sbjct: 490 LVPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----F 525

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               +++L     +  +DG K   + +     G++     V+   + G    W   +AP 
Sbjct: 526 NLPERFNL----EYTSSDGSKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPH 578

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++  I +        +  EK+   L   G     D   +++  +         P  ++ G
Sbjct: 579 QVIGIPVA---DSFSEHLEKVTGMLRDNGVRASVDTSDDRMQKKIRNHTTGKVPFMLLAG 635

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ V  + V  +         + +++ I   +   S+ 
Sbjct: 636 ARDVEANAVSFRFLDGTQINGVPVDKAIGVITQWISSR 673


>gi|33519754|ref|NP_878586.1| prolyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|81836111|sp|Q7VRC8|SYP_BLOFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33504099|emb|CAD83360.1| prolyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 581

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/232 (42%), Positives = 147/232 (63%), Gaps = 2/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  ++E P+  E  SH+LMLR+GM+ Q S G+Y+WLP G + L  +  II EE
Sbjct: 1   MRTTQYLLATIKEIPKSCEPISHQLMLRSGMVRQISSGVYTWLPTGLRVLKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G +E+ +P  Q A+LW +SGR+  YG E+LR  +R ++  + GPTHEE++TD+  +
Sbjct: 61  MNKIGFLEIFMPITQPANLWKQSGRWSEYGLELLRFKNRTNQKFVLGPTHEEMITDLVCN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S++  P   YQI  K+RDE RP+FGV+RS+EF+MKD YSF +  +  + +Y  ++  
Sbjct: 121 EILSHKQFPIKLYQINTKYRDEARPQFGVIRSKEFIMKDGYSFHIHQKSLEDTYYNIYQQ 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT--GETQVFCSKDFMDF 230
           Y  IF R+GLK   ++A+ G IGG +SHEF    +    ET +F      D 
Sbjct: 181 YHIIFKRIGLKFCVVQADPGNIGGIVSHEFQAYYNNTQNETAIFTETFNKDM 232



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 4/169 (2%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            IE+GHIF  G KYS  +++  +  +  +  + MG YGIG  R+V  VIE  HD  GIIW
Sbjct: 413 TIEIGHIFQLGKKYSNCINSCIQKKNKDNLNITMGCYGIGITRIVPMVIEQHHDKHGIIW 472

Query: 341 PDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK---VGCDVFWDDMGEQIGSQFAVAD 396
           P+ +APFK+++I I  +  +  ++  E++Y +LS    +G D+  DD  E  G  F   D
Sbjct: 473 PNEIAPFKLAIIPINMYRFINVQNTAEELYTQLSSIPVIGFDILLDDRKENPGIMFTDID 532

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           LLG P  +I+  + +++ +VE K+R TGI + + L  +I + + +  NN
Sbjct: 533 LLGIPHILIISERNLNNQEVEYKYRKTGIIQKIKLNLIIQFLTEKLMNN 581


>gi|289580635|ref|YP_003479101.1| threonyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289530188|gb|ADD04539.1| threonyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 650

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 146/440 (33%), Gaps = 45/440 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQH----SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E  ++AE   H+ +     +         G+  + P G+  L  +   + +     G   
Sbjct: 242 ERKQEAEKRDHRRIGNEMNLFSIQDVTGPGLPLYHPPGKTVLKELEDFVEDLNKDAGYDY 301

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   DLW  SG Y++Y  +M      +D+     P +      IF+    SYR+L
Sbjct: 302 VETPHVFKTDLWHRSGHYENYQDDMFIFNVGDDE-FGLKPMNCPGHAAIFQDQSWSYRDL 360

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + +    +R E R    G+ R   F + D + F + P+  +    ++    + +   
Sbjct: 361 PIRYAENGKVYRKEQRGELSGLSRVWAFTIDDGHLF-IRPDQIEQEVEEIMDMIIDVLET 419

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             L+   M   + P     S E    A+     V   K  +++ I   +  F        
Sbjct: 420 FDLEY-EMALATRPEKSVGSDEIWEHAEEQLETVL-EKRNLEYDIEEGDGAFYG------ 471

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                           +    D++          ++                 ++ G D 
Sbjct: 472 -------------PKIDFAFEDAIGRAWDGPTVQLDFNMPDR--------FDLSYVGEDN 510

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           ++H  V +     G+      ++   ++GK   W   +AP ++ ++ I            
Sbjct: 511 EEHEPVMIHRALYGSYERFFMMLIEHYEGKFPFW---LAPEQVRVLPI---SDANLGYAY 564

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++          V  DD    +  +   A     P Q+IVG     D  + ++ R     
Sbjct: 565 QVANEFDD--FRVEVDDRDSTLERKIRAAHDDRVPYQIIVGDNEEEDGNISVRDRFEDQE 622

Query: 427 EDMSLEEVINYASHRFSNNR 446
            D+ +E+  ++        R
Sbjct: 623 YDVEIEDFHDHLVAERDEQR 642


>gi|300858607|ref|YP_003783590.1| threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686061|gb|ADK28983.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206319|gb|ADL10661.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|302330876|gb|ADL21070.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
 gi|308276561|gb|ADO26460.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 689

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/462 (16%), Positives = 150/462 (32%), Gaps = 56/462 (12%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           SK  L   Q    +AE   H+     L L +    +   G   + P G      +    R
Sbjct: 248 SKEALEEYQTMMAEAEKRDHRRLGAELDLFS-FPDEIGSGFPVFHPNGGVVRLEMEEHSR 306

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIY 106
                 G   ++ P +   DL+ +SG  D Y   M          D +       +    
Sbjct: 307 RRHIAAGYSFVNTPHITKGDLFKKSGHLDFYADGMFPPMQLDGEIDEDGNVTKQAQDYYA 366

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  
Sbjct: 367 KPMNCPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-C 425

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCS 224
           T +  +     +    + +    GL    +   +  P     S E   L+ +   +V   
Sbjct: 426 TEDQLEAELTSVLDFIISLLKDYGLDDFYLELSTKDPNKFVGSDEIWDLSTSILERVATQ 485

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 P P+                      A      + +  D++    ++S   ++ 
Sbjct: 486 SGLELVPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD- 524

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
              F    +++L     +   DG K   + +     G++     V+   + G    W   
Sbjct: 525 ---FNLPERFNL----EYTAPDGSKRRPIMIHRALFGSIERFFGVLLEHYAGAFPAW--- 574

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++  I +        D  E++ A+L + G     D   +++  +         P  
Sbjct: 575 LAPHQVIGIPVA---DAFVDHLEEMMAQLRQRGIRADVDTSDDRMQKKIRNHTTGKVPFM 631

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V+ G++ V    V  +         + +E+ +        + 
Sbjct: 632 VLAGARDVEAGAVSFRFLDGTQVNGVPVEKAVEIIDQWIRSR 673


>gi|327462766|gb|EGF09088.1| proline--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 616

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPSRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|325688976|gb|EGD30984.1| proline--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 616

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEALTLTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|294941856|ref|XP_002783274.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239895689|gb|EER15070.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 837

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/466 (16%), Positives = 146/466 (31%), Gaps = 80/466 (17%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
            +L+E  R   +A    H+L+ +       H   S G   W   G    + +   IR E 
Sbjct: 332 KMLKEYKRNVEEAMKRDHRLIGKKQDLFFFHPTMSPGSCFWTSHGAVIYNKLVDFIRREY 391

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + S  L+ +SG   +Y   M    +   +     P +      IF   
Sbjct: 392 RLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS-MNIEGETWFLKPMNCPGHCMIFDQK 450

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP       +  R+EL     G+ R R F   DA+ F   P+  +         
Sbjct: 451 VRSYKELPIRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CRPDQVQDEIVHALEF 509

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +++  G     +   + P     S      A++G      +        P +     
Sbjct: 510 LKFVYNTFGFDF-SVCLSTRPKKAIGSRAIWDTAESGLKNALEACGIDYDLNPGDG---- 564

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY------ 294
                           A      + +L D+L    +     ++      F  +Y      
Sbjct: 565 ----------------AFYGPKIDIRLRDALNRYHQCGTIQLDFNLPIRFNLQYRIAETE 608

Query: 295 --------SLPMSATFKGAD-----------------------------GKDHYVQMGSY 317
                   S   ++                                   G +  V +   
Sbjct: 609 ESGDAHAASEAANSPVNDQQKGSTQSSAAVENVGSKAKADEITLGELRHGFERPVMIHRA 668

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++    A++     GK   WP  ++P ++ ++ +        D  + +  +L ++G 
Sbjct: 669 ILGSIERCTAILTEHFGGK---WPFWLSPRQVMVVPV---SDKYSDYADYVRKQLVRLGY 722

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +   D     +  +   A +  F    +VG K  +D  V ++ R T
Sbjct: 723 EADADLSTRTMNKKVREAQVAAFNYIAVVGEKEQNDLTVTLRKRDT 768


>gi|222152444|ref|YP_002561619.1| prolyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254782919|sp|B9DTD1|SYP_STRU0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222113255|emb|CAR40772.1| prolyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 618

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 147/242 (60%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMMRAGYVRQVSAGIYAYLPLANRTIEKLKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRESSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  IPS +   +
Sbjct: 181 YEAIFTRSGLEFKGIIGDGGAMGGKDSQEFMAITP--ERTDLNRWLVLDKSIPSLSDIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 14/183 (7%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ARGIEVGHIF  GT+YS  + A     +GK   + MG YGIG  R+++AVI
Sbjct: 431 PDGHGHLQFARGIEVGHIFKLGTRYSDSLGANILDENGKSIPIVMGCYGIGVSRILSAVI 490

Query: 330 ESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           E                   GI +P  +APF I LI +   D+  +   +K+   L   G
Sbjct: 491 EQHARLFVSKTPKGEYRYSWGINFPKELAPFDIHLITVNTKDEEAQTLTDKLEKELMTKG 550

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E++GS+F+ +DL+G P+++ VG K  S+  VEIK + +G   +++ E VI 
Sbjct: 551 YEVLTDDRNERVGSKFSDSDLIGLPIRITVGKK-ASEGIVEIKIKASGDSIEVNAENVIE 609

Query: 437 YAS 439
              
Sbjct: 610 TLE 612


>gi|322390835|ref|ZP_08064345.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321142505|gb|EFX37973.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 616

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/212 (45%), Positives = 137/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y RIF R G+    +  + G +GG  S EF+ 
Sbjct: 181 YERIFTRSGIDYKAIIGDGGAMGGKDSQEFMA 212



 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+      ++I   L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEASLALTDRIEEALVNKGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + G +F+ +DL+G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 561 RAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|125718857|ref|YP_001035990.1| prolyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|152112958|sp|A3CQI5|SYP_STRSV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125498774|gb|ABN45440.1| Prolyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 616

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  E
Sbjct: 501 TPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + G +F+ +DL+G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 561 RAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|307708104|ref|ZP_07644572.1| prolyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307615889|gb|EFN95094.1| prolyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 617

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D   +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDDEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|21911224|ref|NP_665492.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896602|ref|NP_802952.1| prolyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|81847409|sp|Q8K5S7|SYP_STRP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21905437|gb|AAM80295.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811856|dbj|BAC64785.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 618

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R+
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHVTGVNPGRDFQAEYVDIREVKEGEMSPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLIETLE 612


>gi|322377188|ref|ZP_08051680.1| proline--tRNA ligase [Streptococcus sp. M334]
 gi|321281901|gb|EFX58909.1| proline--tRNA ligase [Streptococcus sp. M334]
          Length = 617

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|87122885|ref|ZP_01078753.1| threonyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86161836|gb|EAQ63133.1| threonyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 572

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 130/388 (33%), Gaps = 51/388 (13%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      KL L      + + G+  W   G      +   IR++
Sbjct: 227 KELKAHLHRLEEAEKRDHRKLGKKLDLFHQ--QEEAPGMVFWHHKGWSLYQTIEQYIRQK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G  E+  P +    LW +SG +  +   M      N +     P +      ++  
Sbjct: 285 QRENGYQEIKTPQIVDRVLWEKSGHWGKFSSGMFTTHAEN-RDYAIKPMNCPCHVQVYNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F+  D + F +  +  +   +    
Sbjct: 344 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRNFVQDDGHIFVM-EDQIQEEVSAFIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G   I  R  + P     S E    ++    +   + +     +P E   +
Sbjct: 403 LLHEIYDDFGFTDIIYRLSTRPEQRVGSDEVWDKSEKALAEALNAANLEWEELPGEGAFY 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSL 296
              I  +                                     +G I+  GT    +S+
Sbjct: 463 GPKIEFSLKDA---------------------------------IGRIWQCGTIQCDFSM 489

Query: 297 P--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  +SA F   DG     V +    +G++     ++    +G    W   ++P ++ ++N
Sbjct: 490 PSRLSAQFVSEDGTRQTPVMLHRAILGSLERFIGILIEETEGSLPAW---LSPEQVVVMN 546

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFW 381
           I          CE +  R +  G     
Sbjct: 547 IT---DRQSQYCEDLVKRFNSNGLRAKL 571


>gi|261880625|ref|ZP_06007052.1| proline-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270332666|gb|EFA43452.1| proline-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 493

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 158/435 (36%), Gaps = 84/435 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P L     +  E+     + KE   +
Sbjct: 36  GCMIIKPYGYAIWEKMQAALDGMFKATGVQNAYFPLLIPKSFFAKEAEHVAGFAKESAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + +++ I+SYR+LP    Q    
Sbjct: 96  THYRLKGTEDGKGIEVDPEAKLEEELIIRPTSETMIWNTYKNWIQSYRDLPILCNQWCNV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R   +R+ EFL ++ ++   T + ++    KM                 + A+
Sbjct: 156 MRWEMRTR-PFLRTSEFLWQEGHTAHATEQEAQEEARKML---------------KVYAD 199

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                                  F  K      +    ++ +                  
Sbjct: 200 -----------------------FAEKWMGVPVVQGVKSETERFAGALDTYTIEAM---- 232

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                                + ++ G   + G  ++     TF   D K  YV   S+G
Sbjct: 233 -----------------MQDGKALQSGTSHFLGQNFAKSFDVTFLNKDNKPEYVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKV 375
           + + R++ A+I    D  G++ P  +AP ++ +I I  +++       K+     + + +
Sbjct: 276 V-STRLMGALIMVHSDDNGLVLPPKLAPIQVVIIPISRNNEQLEAISAKLKPVIDKFASL 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD   ++ G +FA  +L G P+++++G++ + +  +EI  R T  +E++S + +
Sbjct: 335 GISVKYDDSDNKRPGFKFADYELKGVPVRLVMGARDLENGTIEIMRRDTLEKENVSFDGI 394

Query: 435 INYASHRFSNNRPVL 449
           +        + +  +
Sbjct: 395 VERVQTMLDDIQNGI 409


>gi|289168683|ref|YP_003446952.1| prolyl-tRNA synthetase [Streptococcus mitis B6]
 gi|288908250|emb|CBJ23092.1| prolyl-tRNA synthetase [Streptococcus mitis B6]
          Length = 617

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|325686585|gb|EGD28611.1| proline--tRNA ligase [Streptococcus sanguinis SK72]
 gi|325697433|gb|EGD39319.1| proline--tRNA ligase [Streptococcus sanguinis SK160]
          Length = 616

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKTKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEKALALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|307709960|ref|ZP_07646407.1| prolyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619331|gb|EFN98460.1| prolyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 617

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|324989750|gb|EGC21693.1| proline--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 616

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEDAVALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|254579094|ref|XP_002495533.1| ZYRO0B13596p [Zygosaccharomyces rouxii]
 gi|238938423|emb|CAR26600.1| ZYRO0B13596p [Zygosaccharomyces rouxii]
          Length = 454

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 170/473 (35%), Gaps = 60/473 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIR- 58
           R +     I ++ P  +  ASH++  R  +      S G   +LP G K  + +   ++ 
Sbjct: 14  RFASNLSKIAKKPPGSSADASHEVSNRQKLFITDPISPGSIFFLPNGTKIFNKLIQFMKL 73

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTD 116
           ++Q + G  E+  P +    LW +SG +D+Y ++M R+   D + +     P +      
Sbjct: 74  QQQFKYGFKEVVTPLIYRKSLWEQSGHWDNYKEDMFRVEGHDTSKEEYGLKPMNCPGHCM 133

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F+   +SY  LP          R+E      G+ R R+F   D + F  TP+  +    
Sbjct: 134 VFKRFDRSYSELPLRLSDFSPLHRNEASGALSGLTRVRKFHQDDGHIF-CTPDQVESEIA 192

Query: 176 KMFVS----YLRIFH---RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           K        Y ++F     L  +   +   + P       +    A+T    +       
Sbjct: 193 KCLKLVDMCYTKVFPLSPELANEVYTLELSTRPEHFIGDVKVWDYAETVLKNILNKFGKP 252

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                ++                     A      + K+ D   +  +V+   ++    F
Sbjct: 253 WELNEADG--------------------AFYGPKIDIKVTDHTGKYHQVATIQLD----F 288

Query: 289 YFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               ++       +K  D      + +     G++    A++  S+ GK   WP  + P 
Sbjct: 289 QLPERF----DLKYKDRDNTYKRPIMIHRAVFGSVERFMAILIDSNHGK---WPFWLNPR 341

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVG--------------CDVFWDDMGEQIGSQFA 393
           +  +I +    Q   DAC+ ++ +L   G               +   D+  E +G +  
Sbjct: 342 QAMIIPVNTKRQGQVDACKDLFLKLRGQGNENSTDPIPLNSFHFNADLDERPEPVGYRIK 401

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            A +  +   +I+G K V   +  I+ R     E ++ +E+ N       + +
Sbjct: 402 DALMKNYSYLIIIGDKEVETGRYAIRTREDRQLEHLTDDEIFNKFRELEKHYK 454


>gi|329117585|ref|ZP_08246302.1| proline--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326907990|gb|EGE54904.1| proline--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 618

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 146/242 (60%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLSPALLTADLWRESGRYETYGDDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHPDYEDLDIAYEDYRRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +    E         +D  IPS +   +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP--ERTDLDRWLVLDKSIPSVDEIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVAGANKDGYHLTGINPERDFQAEYVDIREVKEGEISPDGHGV--LQFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  + AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSLGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVSKTPKGDYRFAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQ  ++   +I   L   G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNTKDQEAQELTNRIETDLMAKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VEIK + +G   +++ E +     
Sbjct: 572 IGLPIRVTVGKK-ASEGIVEIKIKSSGASIEVNAENLTETLE 612


>gi|315651290|ref|ZP_07904318.1| threonine--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315486442|gb|EFU76796.1| threonine--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 651

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 153/452 (33%), Gaps = 41/452 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIRE 59
           +K  L    ++  D ++  H  + R   +        +G+   LP G K +  +   I +
Sbjct: 222 TKEELEAYLKHLEDIKLRDHNKLGREMELFTTVDVVGQGLPLMLPKGTKMIQKLQRWIED 281

Query: 60  -EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTD 116
            E N  G +    P +  +DL+  SG +D Y   M  L D   + + +   P        
Sbjct: 282 LEDNEWGYVRTKTPLMAKSDLYKISGHWDHYQDGMFILGDPQHDGEILALRPMTCPFQYY 341

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++++  KSYR+LP+   +    FR+E      G+ R R+F + + ++  + P+ ++    
Sbjct: 342 VYKNTQKSYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNV-IRPDQAEEELQ 400

Query: 176 KMFVSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 + +   LGL   +  R                  D    + +   +       +
Sbjct: 401 NCLNLAIYVLETLGLRDDVTFRLSK--------------WDKNNKEKYLGDEAYWEGTQA 446

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              +   ++       +     A      + +  +   +   +    ++           
Sbjct: 447 ALRNI--LVEKGLPFTEADGEAAFYGPKIDIQAKNVYGKEDTMITIQLDAA--------I 496

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +      +   +G K     +    +G      A +   + GK   W   + P ++ ++ 
Sbjct: 497 AENFDLYYIDQNGAKVRPYIVHRTSLGCYERTLAWLIEKYAGKFPTW---LCPEQVRILP 553

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        D    +   L K G D   D   E+IG +   A L   P  ++VG K  ++
Sbjct: 554 I---SDKYADYANSVLKELKKNGVDATVDTRTEKIGFKIRDARLSRLPYMLVVGEKEEAE 610

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V ++ R  G      L + ++         
Sbjct: 611 GSVSVRSRFAGDEGSKKLSDFVDMICKEIRTK 642


>gi|325695492|gb|EGD37392.1| proline--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 616

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEALTLTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + +G   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKASGDTIEVHADNLLETLS 612


>gi|307710999|ref|ZP_07647421.1| prolyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307616961|gb|EFN96139.1| prolyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 617

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNLLETLE 612


>gi|45190711|ref|NP_984965.1| AER105Wp [Ashbya gossypii ATCC 10895]
 gi|44983690|gb|AAS52789.1| AER105Wp [Ashbya gossypii ATCC 10895]
          Length = 457

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 151/432 (34%), Gaps = 44/432 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
             S G   +LP G K  + +   ++ ++QN+ G  E+  P +    LW +SG +++Y  +
Sbjct: 51  PISPGSTFFLPNGTKVFNKLIQFMKLQQQNKFGFQEVITPLIYRKSLWEQSGHWENYKDD 110

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           M R+   D   +     P +      +F+   +SY  LP  F       R+E      G+
Sbjct: 111 MFRVEGNDCAKEEYGLKPMNCPGHCVMFKRFDRSYTELPLRFSDFSPLHRNEASGALSGL 170

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-GDLSH 208
            R R+F   D + F  TPE  +    K                        P+G      
Sbjct: 171 TRVRKFHQDDGHIF-CTPEQVEGEIEKCLQLVD-----------LCYGSVLPLGETSDRA 218

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E   +  +   + +  +  +     S      D               A      + K+ 
Sbjct: 219 ELYTMCLSTRPEKYVGELDVWNHAESVLKSILDNSGKQ--WSINEGDGAFYGPKVDIKVK 276

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAA 327
           D   +  +V+   ++    F    ++       +K AD      + +     G++    A
Sbjct: 277 DHTGKYHQVATIQLD----FQLPERF----DMRYKDADNTYKRPIMIHRAVFGSVERFMA 328

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSK 374
           ++  S+ G    WP  + P +  ++ + A +     A + +                L+ 
Sbjct: 329 LLLDSNKGN---WPFWLNPHQCMVLPVSASNGEMVQAAKALVDKLCGRDTSSTKPVELNS 385

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +   D   E +G +   A    +   V++G++ ++ +KV ++ R +   + MS EE+
Sbjct: 386 FHFNAEIDLRDESVGYRLRDAISRKYSYIVLIGARELAQNKVAVRSRDSSKIQMMSTEEL 445

Query: 435 INYASHRFSNNR 446
            +         +
Sbjct: 446 YDMFCDLERKYK 457


>gi|327468388|gb|EGF13873.1| proline--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 616

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + +I +   D+      ++I A L   G +V  DD  E
Sbjct: 501 TPKGEFRYAWGINFPKELAPFDVHMIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + G +F+ +DL+G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 561 RAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|239631344|ref|ZP_04674375.1| prolyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239525809|gb|EEQ64810.1| prolyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 570

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 141/226 (62%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E  +  
Sbjct: 1   MFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDEMTKID 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+ +KSY
Sbjct: 61  AVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRNELKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +Y  IF
Sbjct: 121 KRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHAYTNIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            RLGL+   +  + G +GG  S EF  +AD GE  +  S       
Sbjct: 181 DRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDSSDYAA 226



 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  GT+Y+  M A F   +G+   + MGSYGIG  R+++A+ E   D  G++
Sbjct: 399 RGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADEHGLV 458

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP ++APF I LI +    +  +     I   L   G  V  DD  E+ G +FA +DL+G
Sbjct: 459 WPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEDAGYSVLVDDRNERPGVKFADSDLIG 518

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            PL+V VG K V +  VE+K R TG   ++  EE+I+   
Sbjct: 519 VPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISSIK 557


>gi|317506992|ref|ZP_07964761.1| threonyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316254750|gb|EFV14051.1| threonyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 683

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 141/450 (31%), Gaps = 53/450 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 255 IAEAERRDHRKLGTELDLFS-FPDELGSGLPVFHPKGGILRKELEDYSRAKHIEAGYEFV 313

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +  + L+  SG  D Y   M      +             +     P +  +   I
Sbjct: 314 NTPHITKSHLYEVSGHLDWYADGMFPPMHVDAELDADGAVRKPGQDYYLKPMNCPMHNLI 373

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FRS  +SYR LP   ++    +R E      G+ R R     DA+ +  T +  K    K
Sbjct: 374 FRSRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIY-CTRDQMKDELAK 432

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                L +    GL    +   +        S E    A     +V  +      P P  
Sbjct: 433 TLQFVLDLLRDYGLDDFYLELSTKDEEKFVGSDEIWEEATRTLAEVAEASGLTLVPDPG- 491

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + +  D+L    ++S   ++      FG +Y+
Sbjct: 492 -------------------GAAFYGPKISVQAKDALGRTWQMSTIQLDFNLPERFGLEYT 532

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            P          ++  V +     G++     V+   + G    W   ++P +   I + 
Sbjct: 533 GPSG-------HREQPVMIHRALFGSIERFIGVLVEHYAGAFPAW---LSPVQAMGIPVS 582

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                   A       L   G     D   +++  +         P  V+ G++ V    
Sbjct: 583 DDHVPHLRA---FVDSLRAGGVRAHLDTSDDRMQKKIFTHTAQKIPFLVLAGARDVEAGT 639

Query: 416 VEIKHRLTGIREDMSLEE----VINYASHR 441
           V  + R  G R  + ++E    V+++ + R
Sbjct: 640 VSFRFRDGGQRNAVPVDEAKRLVLDWVARR 669


>gi|94989304|ref|YP_597405.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94993193|ref|YP_601292.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|114152260|sp|Q1J9R3|SYP_STRPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152261|sp|Q1JJW2|SYP_STRPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94542812|gb|ABF32861.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546701|gb|ABF36748.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 618

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHVTGVNPGRDFQAEYVDIREVKEGEMSPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + +P  +APF + LI +   DQV +D   K+ A L+  G DV  DD  E++GS+F+ +DL
Sbjct: 512 VNFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLTAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGASIEVNAENLIETLE 612


>gi|19746872|ref|NP_608008.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|81847886|sp|Q8NZB4|SYP_STRP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19749114|gb|AAL98507.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
          Length = 618

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R+
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHVTGVNPGRDFQAEYVDIREVKEGEMSPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLIETLE 612


>gi|323350534|ref|ZP_08086196.1| proline--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322123216|gb|EFX94901.1| proline--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 616

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSSGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|225021291|ref|ZP_03710483.1| hypothetical protein CORMATOL_01310 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946024|gb|EEG27233.1| hypothetical protein CORMATOL_01310 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 700

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/458 (14%), Positives = 138/458 (30%), Gaps = 51/458 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L +    +   G   + P G      +    R    
Sbjct: 265 LAEYQHKMAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGGIVRLEMEEHSRRRHI 323

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTH 110
             G   ++ P L   +L+ +SG  D Y   M      + +                 P +
Sbjct: 324 AAGYSFVNTPHLTKGELFEKSGHLDFYADGMFPPMKLDGEVDADGNVTKPAVDYYVKPMN 383

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 384 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQ 442

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +     +    + +    GL    +   +  P     S E    +     +V       
Sbjct: 443 LEAELTSVLDFVISLLRDYGLDDFYLELSTKDPEKFVGSDEIWEKSTAILQRVADKSGLD 502

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P P                       A      + +  D++    ++S   ++    F
Sbjct: 503 LVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----F 538

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               ++       +   DG K   + +     G++     V+   + G    W   +AP 
Sbjct: 539 NLPDRF----HLEYTAPDGTKKQPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPQ 591

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++  I +           E +   L   G     D   +++  +         P  ++ G
Sbjct: 592 QVMGIPVA---DTFVPHLESVINELQARGVRASVDTSDDRMQKKIRTYTQAKVPFMLLAG 648

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ V    V  +         + + + I+       + 
Sbjct: 649 ARDVEAQAVSFRFLDGSQLNGVPVAQAISLIDEWVRSR 686


>gi|294673774|ref|YP_003574390.1| proline--tRNA ligase [Prevotella ruminicola 23]
 gi|294473292|gb|ADE82681.1| proline--tRNA ligase [Prevotella ruminicola 23]
          Length = 493

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/463 (16%), Positives = 170/463 (36%), Gaps = 88/463 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +  Q + +G     P G    + +   + +    TGA
Sbjct: 5   LKELTKRADNYSQWFNDLVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGA 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+   + + KE   +                    + ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSKEAEHVEGFAKECAVVTHYRLRAKEDKSGVEVDPTAKLEEELIVR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATR 183

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++    KM    L+++                                    F  +  
Sbjct: 184 EEAEEEAQKM----LKVY----------------------------------AKFAEEWM 205

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               +    ++ +                                       + ++ G  
Sbjct: 206 AVPVVQGVKSETERFAGALDTYTIEAM---------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     T+   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKAFEVTYLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQ 403
           ++ +I I    +      +++      L   G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVVIIPIATKPEQMEQVNKEVTPIIEALRAKGITVKFDDADNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +++G++ + +  +E+  R T  +E  S++ +  Y      + +
Sbjct: 364 LVLGARDLENGTIEVMRRDTLEKETRSIDGITEYVEQLLEDIQ 406


>gi|328944571|gb|EGG38732.1| proline--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 616

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEDAVALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|332365115|gb|EGJ42878.1| proline--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 616

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEDAVALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|260587370|ref|ZP_05853283.1| proline--tRNA ligase [Blautia hansenii DSM 20583]
 gi|331083671|ref|ZP_08332782.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260542237|gb|EEX22806.1| proline--tRNA ligase [Blautia hansenii DSM 20583]
 gi|330403882|gb|EGG83434.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 479

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 148/421 (35%), Gaps = 67/421 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S KG     P G    +N+   +      TG   + +P      L   E 
Sbjct: 26  VKKADLIDYTSVKGCMVIKPAGYAIWENIQHELDRRFKETGVENVYLPMFIPESLLQKEK 85

Query: 84  GRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +         + +   PT E +  D +   I+S+R+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTHGGLEPLQERLCVRPTSETLFCDFYAKEIQSHRDLPKVYNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +RSREFL ++ ++   T E ++    +M    L I+              
Sbjct: 146 RWE-KTTRPFLRSREFLWQEGHTAHATAEEAEERTIQM----LNIYAD------------ 188

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                 FC +      +  + TD +      S            
Sbjct: 189 ----------------------FCEQVLAMPVVKGKKTDKEKFAGAESTYTIEAL----- 221

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G    FG  ++      +   + K  YV   S+G+
Sbjct: 222 ----------------MHDGKALQSGTSHNFGDGFAKAFGIQYTDKENKLQYVHQTSWGM 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ A+I    D  G++ P  +AP +  +I I+   +   D   K+ A+L   G  V
Sbjct: 266 T-TRLIGAIIMVHGDNSGLVLPPRIAPVQAVVIPIQQKKEGVLDNAYKLQAQLKAAGIRV 324

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +FA  ++ G P+++  G K +  ++  +  R T  +  +SL+ +     
Sbjct: 325 KTDDTDKSPGFKFAEQEMRGIPVRIECGPKDMEANQAVVVRRDTREKITVSLDNLAEEVQ 384

Query: 440 H 440
            
Sbjct: 385 K 385


>gi|153002179|ref|YP_001367860.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS185]
 gi|151366797|gb|ABS09797.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS185]
          Length = 398

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/434 (15%), Positives = 140/434 (32%), Gaps = 40/434 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +     + +L L        + G+  W P G     ++   IR    R G  E++ P   
Sbjct: 2   KTHREIAEQLDLF--HSEPQAPGMIFWHPNGWALFRDIQEHIRRVYRRNGFEEVNTPVFM 59

Query: 76  SADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++
Sbjct: 60  KKELWQTSGHMDMFAENMFFGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFE 119

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++
Sbjct: 120 FGLVHRNESSGSLNGCLRARQFTQDDAHVFCCWS-QAEEEIRGFLQRAKQVYGDYGYHNL 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  + P     S E    A         S+ F       E                  
Sbjct: 179 DVKISTKPEKALGSDEQWRRAQKLLDSACYSEGFDAEYQAGEG----------------- 221

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYV 312
              A         L DS+    +      +    F    ++       +    G+ +  V
Sbjct: 222 ---AFYGPKIELSLTDSMGRCWQCGTIQFD----FNLPERF----DVQYTNEQGEFERPV 270

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G++     ++     G     PD + P  +++ ++    +       ++    
Sbjct: 271 IMHQAMYGSIERWLGILLEVSQGN---LPDWLHPVPVAIASVN---ESNSQFVRQLATLC 324

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  D     +  +         P  + VG K  ++  V +K R  G+   + L 
Sbjct: 325 LARDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVMTHIPLA 384

Query: 433 EVINYASHRFSNNR 446
           E+ +Y + +    +
Sbjct: 385 ELADYLADKLVRKQ 398


>gi|261417283|ref|YP_003250966.1| prolyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373739|gb|ACX76484.1| prolyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327884|gb|ADL27085.1| proline--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 564

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 99/227 (43%), Positives = 147/227 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKYF   L+E P DA + SH  ++R G I   S GIYS +P+G + +  +  IIREE
Sbjct: 1   MKLSKYFYVTLRETPSDATMPSHIFLMRGGYIKPVSTGIYSMMPIGYRVIQKIVNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G IE+ +P +Q+A+LW ESGRY + G+E+LR  DRN+  M+   THEE MTD+ R 
Sbjct: 61  MNKIGGIEVDLPVVQTAELWSESGRYQAIGEELLRFKDRNNHNMVLAMTHEEAMTDLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ + K+RDE R R G++R REFLMKDAYSF  + E     Y + + +
Sbjct: 121 VLNSYKQLPVMLYQFKTKYRDEARARGGLIRVREFLMKDAYSFHTSQEDLDRHYQEEYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           YLRI+ R+G++ + +++++G +GG ++HEF++    GE  +   K  
Sbjct: 181 YLRIYRRVGIEPVVVQSDTGIMGGKVAHEFMLDTPNGEDYLILCKKC 227



 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 99/203 (48%), Gaps = 1/203 (0%)

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +    +     A     +E              RGIE+G+IF  GTK+S  M A 
Sbjct: 363 HFKHCNPKRDFPKFEVADIAEASEVCKCPCCGELLTETRGIEMGNIFKLGTKFSESMGAK 422

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F  A+       MG YGIG  R++A+V+E+SHD  G IWP S+APF++ ++ I   +   
Sbjct: 423 FLTAEKTTAPAIMGCYGIGVGRLMASVVENSHDDFGPIWPKSIAPFQVEIVPI-GKEAEL 481

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK    L   G DV  DD  E+ G +F  ADL G P+++ +G K +++ +VE K R
Sbjct: 482 MELAEKFEKELEAAGIDVLVDDRDERPGVKFKDADLWGSPVRIAIGKKGLANGEVEWKFR 541

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + +E+VI  A   F+ 
Sbjct: 542 NEKQFTMVKVEDVIAKAKEYFAE 564


>gi|307704119|ref|ZP_07641047.1| prolyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307622341|gb|EFO01350.1| prolyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 617

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y RIF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNIKDEEAQALTEKLEANLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++ ++ ++    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHVDNLLETLE 612


>gi|124010058|ref|ZP_01694720.1| threonyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123983945|gb|EAY24340.1| threonyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 578

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 142/383 (37%), Gaps = 41/383 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L +L+E   RD      +L L T    +  KG+  WLP G    + +   +R  
Sbjct: 230 KELKEHLALLEEAKKRDHRKLGKELELFT-FSERVGKGLPLWLPKGALLRERLENFMRRA 288

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q + G   +  P + S  L+  SG ++ YG++  +     +  +  +  P +     +I+
Sbjct: 289 QIKAGYSPVVTPHIGSKKLYETSGHWEKYGEDSFQPIATPQEGEEFMLKPMNCPHHCEIY 348

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S  +SY++LP    +    +R E      G+ R R F   DA+ F  TP   K  + K+
Sbjct: 349 ASKPRSYKDLPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIF-CTPAQVKEEFGKV 407

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +F  LG +    +                  D      +  KD           
Sbjct: 408 IDLVLYVFSALGFEDYTAQISLR--------------DPENKSKYFGKDEDWEQAE---Q 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              D+ +   +        AA      +         K    R  ++G +      Y LP
Sbjct: 451 AIIDVAAQKGLQTVTELGEAAFYGPKLDF------MVKDALKRKWQLGTV---QLDYQLP 501

Query: 298 --MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G+D + H  V +     G++    AV+     GK  +W   +AP +I+++ I
Sbjct: 502 DRFELEYTGSDNERHRPVMIHRAPFGSLERFIAVLTEHCAGKFPLW---LAPEQIAILPI 558

Query: 355 KAHDQVCRDACEKIYARLSKVGC 377
               Q   D  +++YA+L +   
Sbjct: 559 ---SQKFHDYAQEVYAQLEENDI 578


>gi|94991250|ref|YP_599350.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|114152262|sp|Q1JEV3|SYP_STRPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94544758|gb|ABF34806.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 618

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHVTGVNPGRDFQAEYVDIREVKEGEISPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    + +   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENSRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLIETLE 612


>gi|312139298|ref|YP_004006634.1| prolyl-tRNA ligase pros [Rhodococcus equi 103S]
 gi|311888637|emb|CBH47949.1| prolyl-tRNA ligase ProS [Rhodococcus equi 103S]
          Length = 581

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RMSHLFLRTLRDDPADAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   D +  S R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAMGAQEILLPALLPRDPYETSNRWTEYGAGLFRLKDRKGNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RI  RLG+K + + A SG +GG  S EF+  ++ GE      
Sbjct: 184 ERILARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRC 226



 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G KY+        G +GK     MGSYGIG  R+VA + E  HD KG+ 
Sbjct: 419 RGIEVGHVFQLGRKYTDVFGVDVLGENGKPVRPTMGSYGIGVSRLVAVIAEQHHDDKGLR 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  V+PF + L+ I   D   R+  E + A L K   DV +DD     G +F  ++L+G
Sbjct: 479 WPSEVSPFDVHLV-IANKDDAAREGAEALAAELDKARVDVLFDDRKASPGVKFKDSELIG 537

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            PL V+VG +  ++  VE++ R TG   ++ ++  ++  
Sbjct: 538 VPLVVVVG-RGFAEGNVELRDRFTGESREVPVDAALDEI 575


>gi|227833256|ref|YP_002834963.1| Threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184240|ref|ZP_06043661.1| threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|254783518|sp|C3PGS1|SYT_CORA7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227454272|gb|ACP33025.1| Threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 687

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/462 (16%), Positives = 142/462 (30%), Gaps = 56/462 (12%)

Query: 4   SKYFLPILQENPRDAEIASHK-----LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           SK  L   +    +AE   H+     L L +    +   G   + P G      +    R
Sbjct: 248 SKEALESYKTMVEEAEKRDHRRLGAELDLFS-FPDEIGSGFPVFHPNGATVRMEMEEHSR 306

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIY 106
                 G   +S P L   DL+ +SG  D Y   M      + +                
Sbjct: 307 RRHIADGYSFVSTPHLTKGDLFKKSGHLDFYADGMFPPMQLDGEWDADGYCTKQPQDYYA 366

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   D++ +  
Sbjct: 367 KPMNCPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDSHIY-C 425

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCS 224
           TPE  +    K+    + +    GL    +   +  P     S E    +      V   
Sbjct: 426 TPEQLEEELTKVLEFIISLLKDYGLDDFYLELSTKDPNKYVGSDEIWERSTAILQSVAEK 485

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 P P+                      A      + +  D++    ++S   ++ 
Sbjct: 486 SGLELVPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD- 524

Query: 285 GHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
              F    ++       +  +DG K   + +     G++     V+   + G    W   
Sbjct: 525 ---FNLPERF----ELEYTASDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW--- 574

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++  I +           EK+ A L   G     D   +++  +         P  
Sbjct: 575 LAPHQVVGIPVA---DTFAPHLEKVCAELRSRGLRADVDTSDDRMQKKIRNHTTGKVPFM 631

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ G + V    V  +         + +E  +N         
Sbjct: 632 LLAGERDVEADAVSFRFLDGTQVNGVPVEAAVNVIEAWVRER 673


>gi|332359309|gb|EGJ37130.1| proline--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 616

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGILKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPLIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEAVTLTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|315080595|gb|EFT52571.1| threonyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
          Length = 689

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F++I   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEIGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 674


>gi|325673396|ref|ZP_08153087.1| proline--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325555417|gb|EGD25088.1| proline--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 581

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RMSHLFLRTLRDDPADAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   D +  S R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAMGAQEILLPALLPRDPYETSNRWTEYGAGLFRLKDRKGNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RI  RLG+K + + A SG +GG  S EF+  ++ GE      
Sbjct: 184 ERILARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRC 226



 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGH+F  G KY+        G +GK     MGSYGIG  R+VA + E  HD KG+ 
Sbjct: 419 RGIEVGHVFQLGRKYTDVFGVDVLGENGKPVRPTMGSYGIGVSRLVAVIAEQHHDDKGLR 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  V+PF + L+ I   D   R+  E + A L K   DV +DD     G +F  ++L+G
Sbjct: 479 WPSEVSPFDVHLV-IANKDDAAREGAEALAAELDKARVDVLFDDRKASPGVKFKDSELIG 537

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            PL V+VG +  ++  VE++ R TG   ++ ++  ++  
Sbjct: 538 VPLVVVVG-RGFAEGNVELRDRFTGESREVPVDAALDEI 575


>gi|154499081|ref|ZP_02037459.1| hypothetical protein BACCAP_03073 [Bacteroides capillosus ATCC
           29799]
 gi|150271921|gb|EDM99147.1| hypothetical protein BACCAP_03073 [Bacteroides capillosus ATCC
           29799]
          Length = 497

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 158/423 (37%), Gaps = 67/423 (15%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           +  +I   S KG++ + P G    +N+   +      TG   +S+P L    L   E   
Sbjct: 46  KAELIDYSSIKGMFIYRPYGYAIWENIQKELDARFKATGHENVSLPMLIPESLLQKEKDH 105

Query: 86  YDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E   +     ++ ++     PT E +  + +++ I S+R+LP  + Q     R 
Sbjct: 106 VEGFAPECAWVTMGGSEKLEERYCIRPTSETLFCEHYKNIIHSWRDLPKLYNQWCSVLRW 165

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R REFL ++ ++   T E ++    +M    L I+                
Sbjct: 166 E-KTSRPFLRHREFLWQEGHTMHATEEEAREETKRM----LNIYAD-------------- 206

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                               F         +    TD +                     
Sbjct: 207 --------------------FLENVLAMPVVKGRKTDKEKFNGAEETYTVE--------- 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                             + ++ G   YFG  ++     TF G D + H+    S+G+ +
Sbjct: 238 ------------CMMHDKKALQAGTSHYFGDGFAKAFDITFTGKDNQLHHPHQTSWGV-S 284

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  +I +  D  G++ P  +AP ++ +I +  H     +A + +  RL K G  V  
Sbjct: 285 TRMIGGLIMTHGDNNGLVLPPRIAPIQVIIIPVAQHKPGVIEANQAVMDRLIKAGFRVKM 344

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +  G +FA  ++ G PL++ +G K +  ++  +  R +G +  +SL+ +    +  
Sbjct: 345 DDSDQSAGWKFAEYEMKGVPLRLELGPKDIEKNQCVLARRDSGEKSFVSLDGIEETVAAM 404

Query: 442 FSN 444
             +
Sbjct: 405 LDS 407


>gi|154344603|ref|XP_001568243.1| threonyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065580|emb|CAM43350.1| putative threonyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 789

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/510 (15%), Positives = 155/510 (30%), Gaps = 91/510 (17%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +   +  L T   ++ S G   WLP G +  + +   +R++  R G  E+ 
Sbjct: 282 EEAAKRDHRVIGRQQNLFT--FNEVSPGSAFWLPHGARIYNTLVEFLRKKYRRCGFQEVI 339

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S+ LW+ SG ++ Y   M        +     P +      +F S   SYR LP 
Sbjct: 340 SPNMYSSKLWMVSGHWEKYADNMFCTKCEK-EDFGLKPMNCPGHCIMFASQPHSYRELPI 398

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            +    +  R+EL     G+ R R F   DA+ F    + +     +M      ++  LG
Sbjct: 399 RYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQM-QFLSDVYGVLG 457

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            K       + P     S      +++           +   +P                
Sbjct: 458 FKFYFYH-STRPANKLGSDALWDQSESYLRAALNRFCGIPEELPDPLRPDQRFCYDGKPE 516

Query: 250 EQWTAPYAATSDVHNEKL-------------------------------FDSLPENKRVS 278
                        H+E                                  D+L    + +
Sbjct: 517 SVKKMKILMKKVEHSEDPNAWKGPTNGGEGWIENAGDGAFYGPKIDIVVEDALRRRHQCA 576

Query: 279 ARGIEVGHIFYFGTKYSLP----------------------------------------- 297
              ++      FG KY+LP                                         
Sbjct: 577 TIQLDFNLPSRFGLKYTLPAAEKEEVAAASMEKRKHTDPAPTTASPPAAADDESKPKLST 636

Query: 298 MSATFKG-------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             A  +           +   V +    +G++    A++     G    WP  ++P ++ 
Sbjct: 637 YEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAILCEHFGGD---WPFWLSPRQVM 693

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + A +       +K+   +   G     D+    +  +   ++   +   ++VG + 
Sbjct: 694 VVPVSASN---YGYAQKVRDTMHDAGFYADVDNGAATLDKKIRNSEKARYNFILVVGQQE 750

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              + V I+ R      + SL EV+ + + 
Sbjct: 751 QDATSVNIRARGERRLGNKSLAEVVQWFTE 780


>gi|317502695|ref|ZP_07960807.1| proline--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315666181|gb|EFV05736.1| proline--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 493

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 173/466 (37%), Gaps = 88/466 (18%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L++  + AE  S     L+++T +  Q   +G     P G    + + A + +E  +TG 
Sbjct: 5   LKQLTKRAENYSQWYNDLVVKTDLAEQSPVRGCMVIKPYGYAIWEKMQAELDKEFKKTGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    + D+ +I  
Sbjct: 65  QNAYFPMLIPKSFLSKEAEHVKGFAKECAVVTHYRLKASEDGNSVVVDPAAKLDEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +R  I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYRGWIHSWRDLPIMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATK 183

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++     M                 + A+                       F  K  
Sbjct: 184 EEAEQEAQTML---------------KVYAD-----------------------FAEKWM 205

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               +    ++ +                                       + ++ G  
Sbjct: 206 AVPVLQGVKSETERFAGALDTYTIEAM---------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++      F   + K  YV   S+G+ + R++ A+I    D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVQFLNKENKPDYVWATSWGV-STRLMGALIMVHSDDNGLVLPPKLAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++ ++ I   D+  +   +K+     ++ ++G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVVIVPIYKGDEQRKAISDKLQPVITKMQELGISVKFDDSDNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++G + + ++ +EI  R T  +E++S + ++        + +  L
Sbjct: 364 LVMGGRDLENNTIEIMRRDTLEKENVSFDGIVERVQTLLDDIQRNL 409


>gi|324992477|gb|EGC24398.1| proline--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324995993|gb|EGC27904.1| proline--tRNA ligase [Streptococcus sanguinis SK678]
 gi|327460709|gb|EGF07044.1| proline--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327472430|gb|EGF17861.1| proline--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 616

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+       +I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNIKDEEALALTNQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|255582427|ref|XP_002532001.1| threonyl-tRNA synthetase, putative [Ricinus communis]
 gi|223528332|gb|EEF30374.1| threonyl-tRNA synthetase, putative [Ricinus communis]
          Length = 658

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 149/448 (33%), Gaps = 60/448 (13%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G      +    ++  
Sbjct: 263 QLKAYLHFKEEAKRRDHRRLGQDLDLFS-IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIH 321

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                  +  P +  ADLW  SG  D Y + M       D+     P +      +++  
Sbjct: 322 IEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMKIEDENYQLRPMNCPYHILVYKRK 381

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+ P    ++   +R EL     G+ R R F         +  +            
Sbjct: 382 LNSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQCILVLSFIDLQS----------- 430

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   GL    +   S P+    SH F  +  +    + C      FPI  +     
Sbjct: 431 --------GLLFQLIPRYS-PVPSFNSHSFFPVCLSA--ILVCLWCTARFPICWKLFSLQ 479

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
           D+++L     +        S                           F     ++LP   
Sbjct: 480 DLLALMHGDVEIVLLNHNCSLK-------------------------FLMQVDFNLPQRF 514

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+  ++  K   + +    +G+M     V+   + G   +W   ++P ++ ++ +   
Sbjct: 515 DITYVDSNSEKKRPIMIHRAVLGSMERFFGVLIEHYAGDFPLW---LSPIQVRVLPVT-- 569

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                + C ++ ++L + G        GE++      A+    PL  +VG K V    V 
Sbjct: 570 -DTQLEYCREVTSKLKENGIRTEL-FHGERLPKLIRNAEKQKIPLMAVVGPKEVETQSVT 627

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R +G    M++++ I+         
Sbjct: 628 IRSRFSGELGTMTIDDFISRIKSAIEKR 655


>gi|114600746|ref|XP_001153909.1| PREDICTED: hypothetical protein isoform 8 [Pan troglodytes]
          Length = 641

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 127/386 (32%), Gaps = 37/386 (9%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           + E  + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +
Sbjct: 279 KSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLM 337

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F    +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +     
Sbjct: 338 FDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKG 396

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  ++   G     +   + P       E    A+                   + 
Sbjct: 397 CLDFLRTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG 455

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + ++ D++    + +   ++    F    +++L
Sbjct: 456 --------------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNL 491

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                    D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +  
Sbjct: 492 TY--VSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               C +  +K+  +          D D G  +  +   A L  +   ++VG K      
Sbjct: 547 ---TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGT 603

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V I+ R   +  + ++ E I      
Sbjct: 604 VNIRTRDNKVHGERTISETIERLQQL 629


>gi|182683244|ref|YP_001834991.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|303259373|ref|ZP_07345350.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303261128|ref|ZP_07347077.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303263456|ref|ZP_07349379.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303265748|ref|ZP_07351646.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303267821|ref|ZP_07353623.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|226701345|sp|B2ISI9|SYP_STRPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182628578|gb|ACB89526.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|302637965|gb|EFL68451.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639307|gb|EFL69765.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302642517|gb|EFL72862.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302644656|gb|EFL74905.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302647229|gb|EFL77453.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 617

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-ATDGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|294886613|ref|XP_002771785.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239875547|gb|EER03601.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 820

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 150/447 (33%), Gaps = 42/447 (9%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
            +L+E  R   +A    H+L+ +       H   S G   W   G    + +   IR E 
Sbjct: 315 KMLKEYKRNVEEAMKRDHRLIGKKQDLFFFHPTMSPGSCFWTSHGAVIYNKLVDFIRREY 374

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + S  L+ +SG   +Y   M    +   +     P +      IF   
Sbjct: 375 RLRGFDEVITPNIFSEALFQQSGHCGNYKDNMYS-MNIEGETWFLKPMNCPGHCMIFDQK 433

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP       +  R+EL     G+ R R F   DA+ F   P+  +         
Sbjct: 434 VRSYKELPIRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CRPDQVQDEIVHALEF 492

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
              +++  G     +   + P     S      A++G      +        P +   + 
Sbjct: 493 LKFVYNTFGFDF-SVCLSTRPKKAIGSRAIWDTAESGLKNALEACGIDYDLNPGDGAFYG 551

Query: 240 --DDIISLNSIVEQWTAPYA------------ATSDVHNEKLFDSL--------PENKRV 277
              DI   +++                            E+  D+         P +++ 
Sbjct: 552 PKIDIRLRDALNRYHQCGTIQLDFNLPIRFNLQYRIAETEESGDAHAASEAANSPVDEQQ 611

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                    +   G+K +     T      G +  V +    +G++    A++     GK
Sbjct: 612 KGSTQSSAAVENVGSK-AKADEITLGELKHGFERPVMIHRAILGSIERCTAILTEHFGGK 670

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              WP  ++P ++ ++ +        D  + +  +L ++G +   D     +  +   A 
Sbjct: 671 ---WPFWLSPRQVMVVPV---SDKYSDYADYVRKQLVRLGYEADADLSTRTMNKKVREAQ 724

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +  F    +VG K  +D  V ++ R T
Sbjct: 725 VAAFNYIAVVGEKEQNDLTVTLRKRDT 751


>gi|291456785|ref|ZP_06596175.1| threonine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291382062|gb|EFE89580.1| threonine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 677

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 144/457 (31%), Gaps = 52/457 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDEDGNVTKPGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 420 KDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDL 479

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P                       A      + +  D++    +VS   ++    F 
Sbjct: 480 VADPG--------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPV--ADEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + ++++ V  + R       + +++         +  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDKAREQILAVIAKR 662


>gi|56808720|ref|ZP_00366440.1| COG0442: Prolyl-tRNA synthetase [Streptococcus pyogenes M49 591]
 gi|94995163|ref|YP_603261.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|209560100|ref|YP_002286572.1| prolyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|114152263|sp|Q1J4L9|SYP_STRPF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701346|sp|B5XIL5|SYP_STRPZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94548671|gb|ABF38717.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|209541301|gb|ACI61877.1| Prolyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 618

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHVTGVNPGRDFQAEYVDIREVKEGEMSPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLIETLE 612


>gi|221231165|ref|YP_002510317.1| prolyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|225853864|ref|YP_002735376.1| prolyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|254782918|sp|B8ZKT3|SYP_STRPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782920|sp|C1CC55|SYP_STRZJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|220673625|emb|CAR68112.1| prolyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|225723520|gb|ACO19373.1| prolyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|332076711|gb|EGI87173.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
          Length = 617

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 99/213 (46%), Positives = 139/213 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  PTL SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPTLLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|148994606|ref|ZP_01823748.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168489739|ref|ZP_02713938.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147927136|gb|EDK78174.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183571778|gb|EDT92306.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332075929|gb|EGI86396.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 617

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|194397930|ref|YP_002036964.1| prolyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|307126481|ref|YP_003878512.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|226701343|sp|B5E6T8|SYP_STRP4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194357597|gb|ACF56045.1| prolyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|306483543|gb|ADM90412.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
          Length = 617

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|149011134|ref|ZP_01832439.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|147764770|gb|EDK71700.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
          Length = 617

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-ATDGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|325106885|ref|YP_004267953.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967153|gb|ADY57931.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Planctomyces
           brasiliensis DSM 5305]
          Length = 729

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 86/510 (16%), Positives = 158/510 (30%), Gaps = 108/510 (21%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  ++E  R D  +   +L L    I  H  +G+  WLP G      +   I++E  
Sbjct: 236 KNYLEQIEEAKRRDHRVLGKRLHLFQ--IDPHVGQGLCLWLPKGATIRALLEDFIKKELL 293

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--------------- 107
                 +  P +   +L+  SG +  Y          +D   I                 
Sbjct: 294 ERQYEPVYSPHIGRVELYETSGHFPYYRDSQFAPIFGHDAGRIIDYCIRKLQDGELSGES 353

Query: 108 ---------------------PTHEEVMTDI-----------------------FRSHIK 123
                                 ++EE +  +                       ++S  +
Sbjct: 354 EQTLLQAAEIMGYQADDYQKANSNEEKIAALRKWEKQQERYLLKPMNCPHHAQIYKSQPR 413

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G++R R     DA+ F + PE  +  + +      
Sbjct: 414 SYRDLPVRLAEFGTVYRHEQTGELNGMLRVRGLTQDDAHLFCM-PEQVEEEFRQTLELVQ 472

Query: 183 RIFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +   +GL    ++      G D    S E    A+    +V             E   +
Sbjct: 473 FVLKSVGLNDYRVQLSLRDPGSDKYVGSEENWQQAEASLRKVLNESGLSFTACEGEAAFY 532

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
                                         +    +    R  ++G +      Y+LP  
Sbjct: 533 GPK---------------------------ADFMVRDAIGREWQLGTV---QLDYNLPER 562

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + GAD K H  V +     G+M     ++     G   +W   +AP +I ++ +  
Sbjct: 563 FELEYVGADNKMHRPVMIHRAPFGSMERFVGMLIEHFAGAFPLW---LAPEQIRVLPVTD 619

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  + +  RL K G     D    ++ ++   A L   P  ++VG K    + V
Sbjct: 620 K---VADYAQDVVKRLKKEGFRTSADMRSCKVNAKIRDAQLELIPYMLVVGPKEAEQNAV 676

Query: 417 EIKHR-LTGIREDMSLEEVINYASHRFSNN 445
            ++ R  +     M L++ I       +N 
Sbjct: 677 SVRDRIESADIGMMPLDDAIAKFRDEVTNK 706


>gi|148988004|ref|ZP_01819467.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148996688|ref|ZP_01824406.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149001621|ref|ZP_01826594.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168484646|ref|ZP_02709598.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|168493960|ref|ZP_02718103.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|168576309|ref|ZP_02722192.1| prolyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|169833273|ref|YP_001693792.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|225860301|ref|YP_002741810.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649666|ref|ZP_04523918.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237821366|ref|ZP_04597211.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229643|ref|ZP_06963324.1| prolyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298256044|ref|ZP_06979630.1| prolyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502082|ref|YP_003724022.1| proline--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|307066942|ref|YP_003875908.1| prolyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|226701344|sp|B1I8Z1|SYP_STRPI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782922|sp|C1CPD8|SYP_STRZT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147757263|gb|EDK64302.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147760079|gb|EDK67068.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147926468|gb|EDK77541.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|168995775|gb|ACA36387.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|172042164|gb|EDT50210.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|183576158|gb|EDT96686.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183577873|gb|EDT98401.1| prolyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225727194|gb|ACO23045.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237677|gb|ADI68808.1| proline--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|301801205|emb|CBW33879.1| prolyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|306408479|gb|ADM83906.1| Prolyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|327390681|gb|EGE89021.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332077566|gb|EGI88027.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332202178|gb|EGJ16247.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
 gi|332203430|gb|EGJ17497.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
 gi|332204272|gb|EGJ18337.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 617

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|71904323|ref|YP_281126.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|114152264|sp|Q48R89|SYP_STRPM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71803418|gb|AAX72771.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 618

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 96/212 (45%), Positives = 136/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHVTGVNPGRDFQAEYVDIREVKEGEMSPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLIETLE 612


>gi|293376513|ref|ZP_06622741.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292644739|gb|EFF62821.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 476

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 166/448 (37%), Gaps = 77/448 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + AE+  +             KG     P G    +N+   + ++   TG 
Sbjct: 16  FAQWYTDVVKKAELVDYS----------SVKGCMIIRPYGYAIWENIQQYLDQKFKETGH 65

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSH 121
             + +P L    L   E+   + +  E+  +    ++ +    +  PT E +  D +   
Sbjct: 66  ENVYMPMLIPESLLQKEADHVEGFAPEVAWVTHGGNEKLSERLVVRPTSETLFCDHYSKI 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SY +LP  + Q     R E +     +R+ EFL ++ ++   T E ++     M    
Sbjct: 126 IQSYNDLPKKYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTVHATAEEAEEETLLM---- 180

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L  + ++  + + +    G                 E + F                   
Sbjct: 181 LNTYAKMCEEFLAIPVLKG--------------QKTEKEKFAGA---------------- 210

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y   S +H+               + ++ G    FGT ++      
Sbjct: 211 -----------QATYTIESLMHD--------------GKALQSGTSHNFGTGFAKAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   + K  Y    S+G+   R++ A+I    D  G++ P  VAP ++ +I I AH +  
Sbjct: 246 YSDKNSKMQYAHQTSWGVT-TRLIGAIIMVHGDSSGLVLPPRVAPTQVMIIPIAAHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  RL+ V   V  D   +  G +F+  ++ G P++V +G K + +++V +  R
Sbjct: 305 IEKACELQTRLASV-ARVKCDTSDKTPGWKFSEYEMKGIPVRVEIGPKDIENNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
            T  +  +SL+++         + +  L
Sbjct: 364 DTREKIIVSLDDLETKVVELLEDIQQSL 391


>gi|15675760|ref|NP_269934.1| prolyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71911486|ref|YP_283036.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|81856026|sp|Q99XY4|SYP_STRP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13622982|gb|AAK34655.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71854268|gb|AAZ52291.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 618

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHMTGVNPGRDFQAEYVDIREVKEGEMSPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLIETLE 612


>gi|149006018|ref|ZP_01829747.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147762374|gb|EDK69335.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
          Length = 617

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|50915027|ref|YP_060999.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|139474448|ref|YP_001129164.1| prolyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|81822684|sp|Q5X9U7|SYP_STRP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112957|sp|A2RGI4|SYP_STRPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50904101|gb|AAT87816.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|134272695|emb|CAM30966.1| prolyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 618

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHVTGVNPGRDFQAEYVDIREVKEGEMSPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGAKILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQ  +D   K+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQAAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLIETLE 612


>gi|15902287|ref|NP_357837.1| prolyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116515963|ref|YP_815764.1| prolyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|81845175|sp|Q8DRB0|SYP_STRR6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122279350|sp|Q04MI4|SYP_STRP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15457791|gb|AAK99047.1| Prolyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116076539|gb|ABJ54259.1| prolyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 617

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|168492219|ref|ZP_02716362.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183573637|gb|EDT94165.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 617

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|320583490|gb|EFW97703.1| Mitochondrial threonyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 427

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 148/431 (34%), Gaps = 45/431 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI   S G   +LP G +  + +   ++ +Q + G  E+  P +   DLW  SG +D+Y 
Sbjct: 27  MIDASSPGSVFFLPHGTRIFNRLVQFMKIQQEKHGFTEVISPLMYKKDLWETSGHWDNYA 86

Query: 91  KEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++M R+       + +      P +      IF    +S+  LP          R+E   
Sbjct: 87  EDMFRVESNSSSNKLEAVYGLKPMNCPGHCVIFGRFARSHHELPIRLSDWSSLHRNEPSG 146

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+ R R F   D + F  +         K        +   G +   M   + P   
Sbjct: 147 ALTGLTRVRRFHQDDGHIF-CSKSQVGAEIGKTLQLIRLCYSVFGFQKYRMMLSTRP--- 202

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                        ET +            +E     D  +            A      +
Sbjct: 203 -------------ETHI--GTVEEWEEAENELQKALDRHAGPENWAIRDKDGAFYGPKID 247

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             + D   +  + +   ++    F    ++ L     ++G  G +  + +     G++  
Sbjct: 248 VLVTDRTGKEHQAATVQLD----FQLPQRFQL----EYQGEHGPETPIMVHRAVFGSVER 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKI--------YARLSKV 375
             A++   ++GK   WP  ++P +  +I +   H +  R   EK+           L  V
Sbjct: 300 FMALLMDEYEGK---WPFWLSPRQAVIIPVNETHLEYSRGIQEKLGGQQDLDVACSLRDV 356

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  D   E +G +   A   G+   ++VG + V   K+ ++ R     + M ++E+ 
Sbjct: 357 NYYVDVDSRAETVGLRTKDAIQKGYNYIILVGDREVQSGKIAVRSRDNRKVQTMDIDELQ 416

Query: 436 NYASHRFSNNR 446
              +    + +
Sbjct: 417 TLFADLEKSYK 427


>gi|162139703|ref|YP_819759.2| prolyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|148887037|sp|Q03MK9|SYP_STRTD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 620

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 102/244 (41%), Positives = 150/244 (61%), Gaps = 2/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDEIPE 238

Query: 241 DIIS 244
           D++ 
Sbjct: 239 DVME 242



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPERDFKAEYVDIRKVKEGEISPDGQGV--LQFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +AP+ + LI +   D+      +++ A L+  G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPYDVHLITVNTKDEEANALTDRLEAALAAEGYDVLIDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + TG   +++ + +I   +
Sbjct: 572 IGLPIRVTVGKK-ASEGVVEVKIKATGDTIEVNADNLIETLA 612


>gi|303255041|ref|ZP_07341117.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302597871|gb|EFL64941.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS455]
          Length = 617

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +AP  + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPLDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|15900198|ref|NP_344802.1| prolyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|81855097|sp|Q97SR1|SYP_STRPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14971734|gb|AAK74442.1| prolyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
          Length = 617

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 14/233 (6%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           ++   +   D        + DD         +             E       +     A
Sbjct: 381 KIIADRKVQDVRNAVVGANEDDYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLNFA 440

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|148983669|ref|ZP_01816988.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923816|gb|EDK74928.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301799407|emb|CBW31944.1| prolyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 617

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|55820298|ref|YP_138740.1| prolyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822188|ref|YP_140629.1| prolyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|81820361|sp|Q5M1N3|SYP_STRT1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81820523|sp|Q5M674|SYP_STRT2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|55736283|gb|AAV59925.1| prolyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738173|gb|AAV61814.1| prolyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 620

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 102/244 (41%), Positives = 149/244 (61%), Gaps = 2/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTVLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDEIPE 238

Query: 241 DIIS 244
           D++ 
Sbjct: 239 DVME 242



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPERDFKAEYVDIRKVKEGEISPDGQGV--LQFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +AP+ + LI +   D+      +++ A L+  G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPYDVHLITVNTKDEEANALTDRLEAALAAEGYDVLIDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + TG   +++ + +I   +
Sbjct: 572 IGLPIRVTVGKK-ASEGVVEVKIKATGDTIEVNADNLIETLA 612


>gi|225858114|ref|YP_002739624.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|254782917|sp|C1CB39|SYP_STRP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225721841|gb|ACO17695.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 70585]
          Length = 617

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|301793532|emb|CBW35907.1| prolyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 617

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALIEKLEASLMGDGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|312885526|ref|ZP_07745164.1| prolyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311301994|gb|EFQ79025.1| prolyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 490

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 156/441 (35%), Gaps = 84/441 (19%)

Query: 25  LMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  H   KG     P G    + + +++ +    TG      P       +  E
Sbjct: 19  LVVKADLAEHSAVKGCMVIKPYGYSIWEKMQSVLDQMFKDTGHSNAYFPLFIPKSFFSKE 78

Query: 83  SGRYDSYGKEMLRLAD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           +   + + KE   +                   + ++ +I  PT E ++ + +R  I+SY
Sbjct: 79  ASHVEGFAKECAVVTHYRLKNDGEGNIIVDETAKLEEELIVRPTSETIIWNTYRGWIQSY 138

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP    Q     R E+R R   +R+ EFL ++ ++   T E +     +M        
Sbjct: 139 RDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATAEEAIAETEQML------- 190

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                                     V AD  E  +                   D   +
Sbjct: 191 -------------------------HVYADFAENWLALPVVRGRKTANERFAGALDTYCI 225

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            ++                               + ++ G   + G  ++      F   
Sbjct: 226 EAL---------------------------MQDGKALQAGTSHFLGQNFAKAFDVKFTSK 258

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--- 362
           +GK  +V   S+G+ + R++ A++ +  D  G++ P  +AP ++ ++ I   ++      
Sbjct: 259 EGKQEFVWATSWGV-STRLMGALVMAHSDDSGLVLPPKLAPIQVVIVPIFRSEEELAQIS 317

Query: 363 DACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  + +   L      V +D+   ++ G +FA  +L G PL+V +G + +++  VE+  R
Sbjct: 318 EVADALSKALKAKNIRVKYDNRDTQRPGFKFAEYELKGIPLRVAIGGRDLANGTVELARR 377

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +E +  + +        
Sbjct: 378 DTKTKETVQQQGLAEQIEQLL 398


>gi|260589197|ref|ZP_05855110.1| threonine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|260540278|gb|EEX20847.1| threonine--tRNA ligase [Blautia hansenii DSM 20583]
          Length = 658

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 147/448 (32%), Gaps = 36/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQ 61
            ++Y   + +   RD      ++ L T  +    +G+   +P G   L  +   I + E 
Sbjct: 226 LNEYLEQLEEAKKRDHNKLGREMGLFT-TVDVIGQGLPLLMPKGVIMLKELQRWIEDLED 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFR 119
           N  G +    P +   DL+  SG +D Y + M  L D   + +     P        +++
Sbjct: 285 NEWGYVRTKTPLMAKNDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYYVYK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++  SYR LP  + +    FR+E      G+ R R+F + + +   + P+     +    
Sbjct: 345 ANQHSYRELPIRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQMVEEFKGCL 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    LG++                   +   D    + +  +  +         +
Sbjct: 404 ALAKHCLETLGVEEDVTY-------------HLSKWDPENKEKYIGEPEVWEETEGHIRN 450

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
               + +  + +   A  A      +    +   +   +     +               
Sbjct: 451 ILTELGVPFVEDVGEA--AFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ--------F 500

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +G K     +    +G      A +   + G    W   + P ++ ++ I   
Sbjct: 501 DMYYIDENGDKKRPYIIHRTSMGCYERTLAWLIEKYAGLFPTW---LCPEQVRVLPI--- 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D   ++  +L   G     D+  E+IG +   A L   P  ++VG+K   D  V 
Sbjct: 555 SEKYGDYANEVQKQLKANGIRSSVDNRSEKIGYKIREARLEKVPYMLVVGAKEEEDKVVS 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G     +L E I+         
Sbjct: 615 VRSRYLGDEGQKTLSEFIDAICKEIRTK 642


>gi|304410724|ref|ZP_07392342.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS183]
 gi|307304819|ref|ZP_07584569.1| tRNA synthetase class II (G H P and S) [Shewanella baltica BA175]
 gi|304351208|gb|EFM15608.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS183]
 gi|306912221|gb|EFN42645.1| tRNA synthetase class II (G H P and S) [Shewanella baltica BA175]
          Length = 403

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 142/435 (32%), Gaps = 44/435 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +     + +L L        + G+  W P G     ++   +R    R G  E++ P   
Sbjct: 2   KTHREIAEQLDLF--HSEPQAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFM 59

Query: 76  SADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++
Sbjct: 60  KKELWQTSGHMDMFAENMFFGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFE 119

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++
Sbjct: 120 FGLVHRNESSGSLNGCLRARQFTQDDAHVFCCWS-QAEEEIRGFLQRAKQVYGDYGYHNL 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  + P     S E    A          + F       E   +   I L+       
Sbjct: 179 DVKISTKPEKALGSDEQWCRAQKLLDSACQIEGFDAEYQAGEGAFYGPKIELSLTDSM-- 236

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGK-DH 310
                                     R  + G I +    ++LP      +    G+ + 
Sbjct: 237 -------------------------GRRWQCGTIQF---DFNLPERFDVQYANEQGEFER 268

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V M     G++     ++     G     PD + P  +++ ++    +       ++ A
Sbjct: 269 PVIMHQAMYGSIERWLGILLEVSQGN---LPDWLHPVPVAIASVN---ESNSQFVRQLAA 322

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                   V  D     +  +         P  + VG K  ++  V +K R  G+   + 
Sbjct: 323 LCLARDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVITHVP 382

Query: 431 LEEVINYASHRFSNN 445
           L E+ +Y + +    
Sbjct: 383 LSELCDYLADKLEGK 397


>gi|300781050|ref|ZP_07090904.1| threonine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532757|gb|EFK53818.1| threonine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 701

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 77/468 (16%), Positives = 149/468 (31%), Gaps = 67/468 (14%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTG----MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           + +  +L+E    AE   H+ +           +   G+  + P G      +    R+ 
Sbjct: 266 EEYQHMLEE----AEKRDHRRLGAEMDLFSFPDEVGSGLPVFHPDGGIVRMEMENHSRKR 321

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRNDK------AMIYGP 108
               G   ++ P +   DL+ +SG  D Y   M          D +             P
Sbjct: 322 HLEAGYSFVNTPHVTKGDLFQQSGHLDWYADGMFPPMQLDGEWDEDGNCVKQPVDYYAKP 381

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +      IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T 
Sbjct: 382 MNCPFHNLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTE 440

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLADTGETQVFC 223
           +  +     +    + +    GL    +   +      IG D   E              
Sbjct: 441 DQLEQELTDVLEFIISLLQDYGLDDFYLELSTKDPEKYIGDDDIWE-------------- 486

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                     S N            +    A  A      + +  D++    ++S   ++
Sbjct: 487 ---------RSTNILESVATRSGLELVPDPAGAAFYGPKISVQARDAIGRTWQMSTVQLD 537

Query: 284 VGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
               F    +++L     +  +DG K   V +     G++     V+   + G    W  
Sbjct: 538 ----FNLPDRFNL----EYTSSDGTKQRPVMIHRALFGSIERFFGVLLEHYAGAFPAW-- 587

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP ++  I +        DA   +  +L K G     D   +++  +         P 
Sbjct: 588 -LAPRQVVGIPVADEFAPHLDA---VTDKLRKRGIRASVDHSDDRMQKKIRNHTTGKVPF 643

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF---SNNRP 447
            ++ G++ V    V  +         + ++E I   S      +N +P
Sbjct: 644 MLLAGARDVEADAVSFRFLDGSQVNGVPVDEAIELISQWVDGQNNEQP 691


>gi|322411037|gb|EFY01945.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 618

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 100/234 (42%), Positives = 141/234 (60%), Gaps = 2/234 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +    E         +D  IPS
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP--ERTDLDRWVVLDKSIPS 232



 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHLTGVNPGRDFQAEYVDIREVKEGEMSPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDDNGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQ  +D    + A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQAAQDLTATLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  +D  VEIK + TG   +++ + +I    
Sbjct: 572 IGLPIRVTVGKK-AADGIVEIKIKATGDSVEVTADNLIETLE 612


>gi|323126466|gb|ADX23763.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 618

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 100/234 (42%), Positives = 141/234 (60%), Gaps = 2/234 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +    E         +D  IPS
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP--ERTDLDRWVVLDKSIPS 232



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHLTGVNPGRDFQAEYVDIREVKEGEMSPDGHGI--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQ  +D    + A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQAAQDLTATLEADLMANGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  +D  VEIK + TG   +++ + +I    
Sbjct: 572 IGLPIRVTVGKK-AADGIVEIKIKATGDSIEVTADNLIETLE 612


>gi|77405643|ref|ZP_00782731.1| prolyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|161486742|ref|YP_330466.2| prolyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|114152259|sp|Q3JZ37|SYP_STRA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77175716|gb|EAO78497.1| prolyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 617

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 145/242 (59%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +              +D  IPS +   +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVTPNRTD--LNRWLVLDKTIPSIDDIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D      +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVSGANQDGYHFTGVNPERDFTAEYVDIREVKEGEISPDGKGTLKFS--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+ + + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + +G   ++  + +I    
Sbjct: 572 IGLPIRVTVGKK-ASEGIVEVKIKASGDTIEVHADNLIETLE 612


>gi|255514109|gb|EET90372.1| threonyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 560

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 149/435 (34%), Gaps = 41/435 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD       L L +    + S  +  W P G+     +   +R  +      E+S P L 
Sbjct: 164 RDHRSIGESLDLYS--FQEVSPSMVYWHPNGRIIYQQLIEFMRGMERLYDYKEISTPALA 221

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +  LW  SG  D Y   M  + D         P +      I++S   SY+ LPF     
Sbjct: 222 NIALWHVSGHIDYYKDNMF-IIDDGSSEFGLKPMNCPSTILIYKSRRWSYKELPFRTAIF 280

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E+     G+ R +E    D + F ++ EG +     +     R++   GLK   
Sbjct: 281 DKLYRREVSGALSGLFRVQELTQDDGHIF-VSAEGVEKEITLLLELVKRVYGVFGLKYY- 338

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            +  + P                  +    ++  D    S     +       I E+  A
Sbjct: 339 AKLSTMP-----------------DEHLGDEELWDKATESIKRALETNGMKYEIKEKEGA 381

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQ 313
            Y    D   E   DS     + +   ++    +    ++       + G DGK+H  V 
Sbjct: 382 FYGPKIDFDIE---DSQGRLWQCATIQLD----YQLPKRF----GIVYTGEDGKEHTPVI 430

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++     ++   + GK  +W   ++P +  +I+I    +      E ++ ++ 
Sbjct: 431 IHRAILGSIERFVGILVEHYQGKLPLW---LSPVQARVISI---SEENNSYAESVFEKIK 484

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D     +  +   A +   P  V++G++      + ++ R       + LE 
Sbjct: 485 LEGIRAEMDGSDHTLEYKIRSAQMQKIPYIVVIGNREREKGSISVRMRSGKQENGIKLEP 544

Query: 434 VINYASHRFSNNRPV 448
           ++       S     
Sbjct: 545 LLESIKKEISARTAA 559


>gi|123968100|ref|YP_001008958.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|152112943|sp|A2BPZ0|SYP_PROMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123198210|gb|ABM69851.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 600

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 101/229 (44%), Positives = 142/229 (62%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++PL  + ++ ++AII +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVNSGIYAYMPLMLRVIEKISAIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  +       Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSQNDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++
Sbjct: 181 VSNAYENIFKSCGLQTVGVEADSGAIGGASSKEFMVTADAGEDSILFTQ 229



 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  G KYS  ++A F   DG+   + MG YGIG  R+  A IE +HD KGI 
Sbjct: 431 KGIEIGHIFQLGQKYSEKLNAKFSDKDGQLKNLWMGCYGIGVTRIAQAAIEQNHDQKGIC 490

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  ++PF++ +I     D +  D  E+IY+       DV  DD  ++ G +F  A+L+G
Sbjct: 491 WPIHISPFEVIIIPTNLKDPIQSDLTEQIYSNFLINKIDVLLDDRNDRAGVKFKDAELIG 550

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN-YASH 440
            P Q+I+G +   + +VE+  R    +  +S ++++  + S 
Sbjct: 551 IPFQIIIG-RDSINKEVELLCRTNNTKLKISTDKLLETFISE 591


>gi|307103531|gb|EFN51790.1| hypothetical protein CHLNCDRAFT_56367 [Chlorella variabilis]
          Length = 594

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 72/453 (15%), Positives = 142/453 (31%), Gaps = 66/453 (14%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD      +L L +  I++    G+  W P G      V    +    + G   +
Sbjct: 190 EEAALRDHRRLGQELDLFS--INEACGGGLVFWHPKGAMVRHLVEDFWKSIHLQYGYHLL 247

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +   DLW  SG +D Y   M    D         P +      I++    SYR+LP
Sbjct: 248 FTPHIAKVDLWKTSGHFDFYRDSMFNQMD-------LKPMNCPFHITIYKQGYYSYRDLP 300

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             + ++   +R E      G+ R       DA+ F L P   +     +      +  + 
Sbjct: 301 IKWAELGTVYRYERSGTMHGLFR------DDAHIFCL-PTQIEAEILGVLDLTELLLSQF 353

Query: 189 GLKSI--------------PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           G                   +   + P     S E    A+         K +       
Sbjct: 354 GFHDFEASCKRKPPPRPCLQVNLSTRPDKFVGSPEIWDQAEHALKAALQRKGWAFAEDVG 413

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + K+ D++    + S   ++    F    ++
Sbjct: 414 GG--------------------AFYGPKIDIKICDAIGRKWQCSTVQLD----FNLPERF 449

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            +        A+ K+  + +    +G++     ++  ++ G   +W   +AP +  L+ +
Sbjct: 450 DM---FYISDANIKERPIMIHRAILGSLERFMGILIENYAGAFPLW---LAPVQCRLVPV 503

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                        +   L   G  V     G  +G     A+    P+  +VG +  S  
Sbjct: 504 N---DAVMGYVSGVAQALQAAGLRVEV-SSGLSVGKAIRAAEKDKIPVMCVVGQREASAG 559

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            V ++    G    M +E+++   +   +N +P
Sbjct: 560 TVAVRTYSHGDVGCMLVEDLVERMAKASANKQP 592


>gi|319745866|gb|EFV98156.1| proline--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 617

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 145/242 (59%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +              +D  IPS +   +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVTPNRTD--LNRWLVLDKTIPSIDDIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D      +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVSGANQDGYHFTGVNPERDFTAEYVDIREVKEGEISPDGKGTLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+ + + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + +G   ++  + +I    
Sbjct: 572 IGLPIRVTVGKK-ASEGIVEVKIKASGDTIEVHADNLIETLE 612


>gi|22538051|ref|NP_688902.1| prolyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76798737|ref|ZP_00780956.1| prolyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77414704|ref|ZP_00790836.1| prolyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|81845373|sp|Q8DXD8|SYP_STRA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22534955|gb|AAN00775.1|AE014278_2 prolyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76585916|gb|EAO62455.1| prolyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77159248|gb|EAO70427.1| prolyl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 617

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 145/242 (59%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +              +D  IPS +   +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVTPNRTD--LNRWLVLDKTIPSIDDIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D      +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVSGANQDGYHFTGVNPERDFTAEYVDIREVKEGEISPDGKGTLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+ + + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + +G   ++  + +I    
Sbjct: 572 IGLPIRVTVGKK-ASEGIVEVKIKASGDTIEVHADNLIETLE 612


>gi|260437371|ref|ZP_05791187.1| threonine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292810283|gb|EFF69488.1| threonine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 651

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 151/446 (33%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L++  R D      ++ L T  +    +G+   +P G++ +  +   I +E++ 
Sbjct: 227 KAYLEHLEDIKRRDHNKLGREMELFT-TVDVIGQGLPLIMPKGERIIRTLQRWIEDEEDS 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSH 121
            G +    P +  +DL+  SG +D Y   M  L D   + +     P        ++++ 
Sbjct: 286 RGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDKEVFALRPMTCPFQYYVYKAS 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            KSYR+LP  + +    FR+E      G+ R R+F + + +   + P+     +      
Sbjct: 346 QKSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQMVKEFKDCIAL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                  LG++       S     +  +++I   +  E      +  +   +      F 
Sbjct: 405 AQYCLRTLGVEEDVTYHLSRWDPANPGNKYIGKPEVWEDT----EQHIRNVLNELKIPFV 460

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           + I             A      +    +   +   +     +                 
Sbjct: 461 EDIGEA----------AFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ--------FDM 502

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +    G K     +    +G      A +   + G    W   + P ++ ++ I     
Sbjct: 503 YYIDEKGDKVRPYIIHRTSMGCYERTLAWLIEKYAGMFPTW---LCPEQVRVLPI---SD 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  + + A++ +    V  D   E++G +   A L   P  ++VG K      V ++
Sbjct: 557 KYADYADSVAAKIREHKIYVEADHRAEKLGYKIRDARLARVPYILVVGEKEQETGVVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G      LE+ IN         
Sbjct: 617 SRFLGDEGQKPLEQFINDICEEIRTK 642


>gi|331082613|ref|ZP_08331736.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400232|gb|EGG79874.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 658

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 147/449 (32%), Gaps = 38/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQ 61
            ++Y   + +   RD      ++ L T  +    +G+   +P G   L  +   I + E 
Sbjct: 226 LNEYLEQLEEAKKRDHNKLGREMGLFT-TVDVIGQGLPLLMPKGVIMLKELQRWIEDLED 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFR 119
           N  G +    P +   DL+  SG +D Y + M  L D   + +     P        +++
Sbjct: 285 NEWGYVRTKTPLMAKNDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYYVYK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++  SYR LP  + +    FR+E      G+ R R+F + + +   + P+     +    
Sbjct: 345 ANQHSYRELPIRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQMVEEFKGCL 403

Query: 179 VSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                    LG+ + +                     D    + +  +  +         
Sbjct: 404 ALAKHCLETLGVAEDVTYHLSK--------------WDPENKEKYIGEPEVWEETEGHIR 449

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +    + +  + +   A  A      +    +   +   +     +              
Sbjct: 450 NILTELGVPFVEDVGEA--AFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ-------- 499

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   +G K     +    +G      A +   + G    W   + P ++ ++ I  
Sbjct: 500 FDMYYIDENGDKKRPYIIHRTSMGCYERTLAWLIEKYAGLFPTW---LCPEQVRVLPI-- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D   ++  +L   G     D+  E+IG +   A L   P  ++VG+K   D  V
Sbjct: 555 -SEKYGDYANEVQKQLKANGIRSSVDNRSEKIGYKIREARLEKVPYMLVVGAKEEEDKVV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +L E I+         
Sbjct: 614 SVRSRYLGDEGQKTLSEFIDAICKEIRTK 642


>gi|322386937|ref|ZP_08060561.1| proline--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321269219|gb|EFX52155.1| proline--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 616

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 97/215 (45%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVAGANEDGYHLTGVNPGRDFSPEYVDIREVREGEVSPDGQGILKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      ++I A L   G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHADNLLETLS 612


>gi|239621470|ref|ZP_04664501.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239515931|gb|EEQ55798.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 686

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 148/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 251 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 309

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 310 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 369

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 370 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 428

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 429 KDELTSLLTFVLNLLKDFGLTDFYLELSTKDPNKYVGSDEIWEEATNTLAEVAKES---- 484

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                           N  +       A      + +  D++    +VS   ++    F 
Sbjct: 485 ----------------NLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 524

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 525 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 577

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 578 VLGVPVA--DEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 634

Query: 409 KFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFS 443
           + ++++ V  + R      G+  D + E+++     R  
Sbjct: 635 EDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQ 673


>gi|225856022|ref|YP_002737533.1| prolyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254782921|sp|C1CIE5|SYP_STRZP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225724634|gb|ACO20486.1| prolyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 617

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKIPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|77412297|ref|ZP_00788612.1| prolyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77161644|gb|EAO72640.1| prolyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 617

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 145/242 (59%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +              +D  IPS +   +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVTPNRTD--LNRWLVLDKTIPSIDDIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D      +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVSGANQDGYHFTGVNPERDFTAEYVDIREVKEGEISPDGKGTLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+ + + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + +G   ++  + +I    
Sbjct: 572 IGLPIRVTVGKK-ASEGIVEVKIKASGDTIEVHADNLIETLE 612


>gi|282859312|ref|ZP_06268424.1| proline--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282587892|gb|EFB93085.1| proline--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 493

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 178/463 (38%), Gaps = 88/463 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +  Q + +G     P G    +N+ A + +    TG 
Sbjct: 5   LKELTKRADNYSQWYNDLVVKADLAEQSAVRGCMVIKPYGYAIWENIQAQLDKMFKATGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEM-----LRLADRN-------------DKAMIYG 107
                P L        E+   + + KE       RL  +              ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVEGFAKEAAVVTHYRLKTKENGGGVEVDPSAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHAT- 182

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              K    K     L+                            V AD  E  +      
Sbjct: 183 ---KEEAEKEAKLMLK----------------------------VYADFAEKWLAVPVIQ 211

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               + SE   F   +   +I                               + ++ G  
Sbjct: 212 G---VKSETERFAGALDTYTIEAM------------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKIAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++ ++ I   ++  +   +K+      L + G  V +D+   ++ G +FA  +L G P++
Sbjct: 304 QVVIVPIFKGEEQLQQLTDKLQPVIDDLREAGITVKFDNSDNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +G + + ++ +E+  R T  +E +S + + +Y  +  ++ +
Sbjct: 364 LAMGGRDLENNTIEVMRRDTLEKESVSFDGIADYVKNLLNDIQ 406


>gi|25011939|ref|NP_736334.1| prolyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|81845546|sp|Q8E362|SYP_STRA3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24413481|emb|CAD47559.1| prolyl-tRNA synthetase [Streptococcus agalactiae NEM316]
          Length = 617

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 145/242 (59%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +              +D  IPS +   +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVTPNRTD--LNRWLVLDKTIPSIDDIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D      +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVSGANQDGYHFTGVNPERDFTAEYVDIREVKEGEISPDGKGTLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+ + + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + +G   ++  + +I    
Sbjct: 572 IGLPIRVTVGKK-ASEGIVEVKIKASGDTIEVHADNLIETLE 612


>gi|328754594|gb|EGF68210.1| threonyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 689

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 674


>gi|314967879|gb|EFT11978.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
          Length = 689

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 674


>gi|160876899|ref|YP_001556215.1| tRNA synthetase class II [Shewanella baltica OS195]
 gi|160862421|gb|ABX50955.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS195]
 gi|315269103|gb|ADT95956.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS678]
          Length = 398

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 143/436 (32%), Gaps = 44/436 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +     + +L L        + G+  W P G     ++   +R    R G  E++ P   
Sbjct: 2   KTHREIAEQLDLF--HSEPQAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFM 59

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++
Sbjct: 60  KKELWQTSGHMDMFAENMFFGGGKENMGEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFE 119

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++
Sbjct: 120 FGLVHRNESSGSLNGCLRARQFTQDDAHVFCCWS-QAEEEICGFLQRAKQVYGDYGYHNL 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  + P     S E    A          + F       E   +   I L+       
Sbjct: 179 DVKISTKPEKALGSDEQWCRAQKLLDSACQIEGFDAEYQAGEGAFYGPKIELSLTDSM-- 236

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGK-DH 310
                                     R  + G I +    ++LP      +    G+ + 
Sbjct: 237 -------------------------GRRWQCGTIQF---DFNLPERFDVQYTNEQGEFER 268

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V M     G++     ++     G     PD + P  +++ ++    +       ++ A
Sbjct: 269 PVIMHQAMYGSIERWLGILLEVSQGN---LPDWLHPVPVAIASVN---ESNSQFVRQLAA 322

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                   V  D     +  +         P  + VG K  ++  V +K R  G+   + 
Sbjct: 323 LCLARDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVMTHIP 382

Query: 431 LEEVINYASHRFSNNR 446
           L E+ +Y + +    +
Sbjct: 383 LAELADYLADKLVRKQ 398


>gi|312863998|ref|ZP_07724234.1| proline--tRNA ligase [Streptococcus vestibularis F0396]
 gi|322517545|ref|ZP_08070414.1| proline--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|311100411|gb|EFQ58618.1| proline--tRNA ligase [Streptococcus vestibularis F0396]
 gi|322123805|gb|EFX95379.1| proline--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 620

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/244 (41%), Positives = 149/244 (61%), Gaps = 2/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDEIPE 238

Query: 241 DIIS 244
           D++ 
Sbjct: 239 DVME 242



 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPERDFKAEYVDIREVKEGEISPDGQGV--LQFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +AP+ + LI +   D+      +++ + L+  G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPYDVHLITVNTKDEEANALTDRLESALAAEGYDVLIDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + TG   +++ + +I   +
Sbjct: 572 IGLPIRVTVGKK-ASEGVVEVKIKATGDTIEVNADNLIETLA 612


>gi|251781674|ref|YP_002995976.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390303|dbj|BAH80762.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 618

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/234 (42%), Positives = 141/234 (60%), Gaps = 2/234 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +    E         +D  IPS
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP--ERTDLDRWVVLDKSIPS 232



 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHLTGVNPGRDFQAEYVDIREVKEGEMSPDGHGI--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQ  +D    + A L   G +V  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQAAQDLTATLEADLMAKGYEVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  +D  VEIK + TG   +++ + +I    
Sbjct: 572 IGLPIRVTVGKK-AADGIVEIKIKATGDSIEVTADNLIETLE 612


>gi|327331893|gb|EGE73630.1| threonine--tRNA ligase [Propionibacterium acnes HL096PA3]
          Length = 689

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 674


>gi|255532798|ref|YP_003093170.1| prolyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255345782|gb|ACU05108.1| prolyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 490

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 165/439 (37%), Gaps = 83/439 (18%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGK 91
           H   KG     P G    + + A++ ++   TG      P       +  E+   + +  
Sbjct: 28  HSSVKGCMVIKPYGYSIWEKMQAVLDQKFKDTGHSNAYFPLFIPKSFFSKEASHVEGFAT 87

Query: 92  EMLRLAD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           E   +                   + ++ +I  PT E ++ + ++  I+SYR+LP    Q
Sbjct: 88  ECAVVTHYRLKNDGNGNIIVDETAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPILVNQ 147

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                R E+R R   +R+ EFL ++ ++   T + +     K     L ++         
Sbjct: 148 WANVVRWEMRTRL-FLRTTEFLWQEGHTAHATADEAVEETRK----MLDVY--------- 193

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                              AD  E         +   + + N  F   +    I      
Sbjct: 194 -------------------ADFAEQ---WMAVPVVKGVKTPNERFAGALDTYCIEAL--- 228

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                                    + ++ G   + G  ++      F   +GK  +V  
Sbjct: 229 ---------------------MQDGKALQAGTSHFLGQNFAKAFDVKFTNKEGKIEHVWA 267

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYAR 371
            S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  H++  ++     +++ A+
Sbjct: 268 SSWGV-STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPIYKHEEELKNITGFVDELIAK 326

Query: 372 LSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L ++G  V +DD   ++ G +FA  +L G P+++ +G + + +  VE+  R T  ++ + 
Sbjct: 327 LKRMGISVKYDDRDTQRPGFKFAEYELKGVPVRLAIGGRDMENGTVELARRDTREKQTVL 386

Query: 431 LEEVINYASHRFSNNRPVL 449
            + +  + +      +  +
Sbjct: 387 QDGLEIFIAQLLEEIQENI 405


>gi|284037200|ref|YP_003387130.1| prolyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816493|gb|ADB38331.1| prolyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 490

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/467 (16%), Positives = 164/467 (35%), Gaps = 88/467 (18%)

Query: 10  ILQENPRDAEIAS---HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           + +  P  +E  S   ++L+ R  +    + +G     P G    + +   + +    TG
Sbjct: 1   MAKAIPSRSENYSEWYNELIKRADLAENSAVRGCMVIKPYGFAIWEKMQRALDDMFKETG 60

Query: 66  AIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIY 106
                 P          E+   + + KE   +                    + ++ +I 
Sbjct: 61  HQNAYFPLFIPKSFLSKEASHVEGFAKECAVVTHYRLKNAEDGSGVIVDPEAKLEEELIV 120

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E V+   +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T
Sbjct: 121 RPTSETVIWSTYKNWIQSYRDLPLLINQWANVVRWEMRTRI-FLRTAEFLWQEGHTAHAT 179

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            E +K    +M    L I+ +                                  F  + 
Sbjct: 180 AEEAKFETRQM----LDIYAQ----------------------------------FAEEW 201

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                +    T  +     +  +                              + ++ G 
Sbjct: 202 MALPVVKGTKTANERFAGADDTLCIEAM---------------------MQDGKALQAGT 240

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             + G  ++      F     +  YV   S+G+ + R++ A+I +  D  G++ P  +AP
Sbjct: 241 SHFLGQNFAKAFDVQFLNKQNQLDYVWGTSWGV-STRLMGALIMAHSDDDGLVLPPKLAP 299

Query: 347 FKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPL 402
            ++ ++ I   ++         + +   L K G  V +DD    + G +FA  +L G P+
Sbjct: 300 IQVVIVPIYRSEEQLELLSAKIKPLVQELRKAGVSVKYDDSDANKPGWKFAEYELRGVPV 359

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ +G + + +  VEI  R    +E +  E +  +  +   + +  +
Sbjct: 360 RLAMGGRDLENGTVEIARRDLKTKETVPFEGLTEHIKNLLDDIQQTI 406


>gi|50842554|ref|YP_055781.1| threonyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289426579|ref|ZP_06428319.1| threonine--tRNA ligase [Propionibacterium acnes J165]
 gi|295130636|ref|YP_003581299.1| threonine--tRNA ligase [Propionibacterium acnes SK137]
 gi|73919815|sp|Q6A8U3|SYT_PROAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50840156|gb|AAT82823.1| threonyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289160223|gb|EFD08387.1| threonine--tRNA ligase [Propionibacterium acnes J165]
 gi|291376551|gb|ADE00406.1| threonine--tRNA ligase [Propionibacterium acnes SK137]
 gi|332675479|gb|AEE72295.1| threonine--tRNA ligase [Propionibacterium acnes 266]
          Length = 684

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 237 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 296

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 297 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 356

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 357 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 415

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 416 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 463

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 464 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 521

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 522 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 570

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 571 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 627

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 628 IAGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 669


>gi|229829763|ref|ZP_04455832.1| hypothetical protein GCWU000342_01860 [Shuttleworthia satelles DSM
           14600]
 gi|229791752|gb|EEP27866.1| hypothetical protein GCWU000342_01860 [Shuttleworthia satelles DSM
           14600]
          Length = 479

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 161/450 (35%), Gaps = 76/450 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +  + AE+          M +   KG   + PLG    +N+   +     
Sbjct: 14  RSEDFAQWYTDVVKKAEL----------MQYSSLKGFMIYKPLGYAIWENIQKNMDAMFK 63

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
            TG   + +P L    L   E+   + +  E+  +         + +   PT E +  D+
Sbjct: 64  ETGVENVYMPLLMPESLLKKEAEHVEGFAPEVAWVTQGGIQPLQERLAIRPTSETLFCDL 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + + ++SYR+LP  + Q     R E +     +RS EFL ++ ++   T E ++    +M
Sbjct: 124 YSTIVQSYRDLPKVYNQWCSVVRWE-KTTRPFLRSSEFLWQEGHTAHATAEEAEARTIQM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y                                        FC K      I    T
Sbjct: 183 LNVYAD--------------------------------------FCEKYLAIPVIKGRKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +      +     T                          + ++ G    FG  ++  
Sbjct: 205 DKEKFAGAEATYTIETL---------------------MHDGKALQSGTSHNFGDGFARA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   + +  YV   S+G+ + R++ A+I    D  G++ P  +AP +I ++ +   
Sbjct: 244 YGIQYTDKNNQLRYVHQTSWGV-STRLIGAIIMVHGDDSGLVLPPRIAPVQIVIVPVMQQ 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  E++  +L K G  V  DD  +  G +FA A++ G PL++ VG K +   +V 
Sbjct: 303 KEGVLEKAEELRQQLQKAGFSVKLDDSEKSPGWKFAEAEMRGIPLRIEVGPKDIEKEQVV 362

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +  R    +  + + E+   A       + 
Sbjct: 363 MVRRDNRKKVFVPMRELTERAEQLLEQEQE 392


>gi|313764410|gb|EFS35774.1| threonyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313772208|gb|EFS38174.1| threonyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313807564|gb|EFS46051.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313810073|gb|EFS47794.1| threonyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313815947|gb|EFS53661.1| threonyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313818605|gb|EFS56319.1| threonyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820374|gb|EFS58088.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822822|gb|EFS60536.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825247|gb|EFS62961.1| threonyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|313827535|gb|EFS65249.1| threonyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|313830403|gb|EFS68117.1| threonyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313833773|gb|EFS71487.1| threonyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314915402|gb|EFS79233.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918317|gb|EFS82148.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920127|gb|EFS83958.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314925261|gb|EFS89092.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314931649|gb|EFS95480.1| threonyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955705|gb|EFT00107.1| threonyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958104|gb|EFT02207.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314959956|gb|EFT04058.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314973405|gb|EFT17501.1| threonyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976084|gb|EFT20179.1| threonyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314978527|gb|EFT22621.1| threonyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314983896|gb|EFT27988.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|314988078|gb|EFT32169.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314989885|gb|EFT33976.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315085609|gb|EFT57585.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088339|gb|EFT60315.1| threonyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315095950|gb|EFT67926.1| threonyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|315101418|gb|EFT73394.1| threonyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315105605|gb|EFT77581.1| threonyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315108634|gb|EFT80610.1| threonyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327326232|gb|EGE68022.1| threonine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327443095|gb|EGE89749.1| threonyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
 gi|327445877|gb|EGE92531.1| threonyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448141|gb|EGE94795.1| threonyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|327450737|gb|EGE97391.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327453921|gb|EGF00576.1| threonyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753425|gb|EGF67041.1| threonyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328754156|gb|EGF67772.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328760808|gb|EGF74374.1| threonine--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 689

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 674


>gi|307128591|ref|YP_003880621.1| uracil phosphoribosyltransferase [Candidatus Sulcia muelleri CARI]
 gi|306483053|gb|ADM89923.1| uracil phosphoribosyltransferase [Candidatus Sulcia muelleri CARI]
          Length = 640

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 145/450 (32%), Gaps = 46/450 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KYFL   +   RD      KL L T   +   +G+  WLP G      +   +     
Sbjct: 226 LDKYFLKKKESKKRDHRKIGKKLELFT-FSNIVGQGLPIWLPKGFLLKKKIENFLLNLNQ 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   ++ P + +  L+  SG ++ Y +      ++   ++  +    +     +I+  
Sbjct: 285 KIGYEMVTTPHIANKKLYNISGHWEKYYENSFNTFISPNKEEQFLLKSMNCPHHCEIYNY 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY++LP  F +    +R E      G+ R R F   DA+ F  T E        +  
Sbjct: 345 KKFSYKDLPKRFAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIF-CTKEQLIEELKSVID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + IF +LG      +                  D  +   +               D 
Sbjct: 404 MIIFIFQKLGFSKYKAQISLR--------------DKKKKYKYIGSKEHWEK---SEKDL 446

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSL 296
                   I        A            +    K        +G  +  GT    Y+L
Sbjct: 447 IKATKEKKIDTYIKYGEA------------AFYGPKLDFMVQDILGRNWQLGTVQVDYNL 494

Query: 297 P--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P   +  +     K    + +    +G++    A++  + +G   +W           I 
Sbjct: 495 PERFNLFYTNNKNKLIRPIMIHRATLGSLERFIAILIENTEGNFPLWLSP------IPIR 548

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +      +KI   L ++    F D   E +  +   A++   PL +++G K    
Sbjct: 549 IIPILEKNFFYSKKILNLLMQLEIQSFIDSRIESLSKKIIDAEIDKIPLILVLGDKEEKL 608

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + V I+         +SLE  IN+     +
Sbjct: 609 NSVSIRSYKEKKIIFLSLERFINFLKKEIN 638


>gi|225867815|ref|YP_002743763.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259511619|sp|C0MFA1|SYP_STRS7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225701091|emb|CAW97925.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 618

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVAGANKDGYHLTGVNPNRDFQAEYADIREVKEGETSPDGHGV--LQFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMAANILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQ  +D  EK+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQEAQDLTEKVEASLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G P++V +G K  ++  VEIK + TG   ++  + +I   
Sbjct: 572 IGLPIRVTIGKK-AAEGIVEIKIKATGDSIEVHADSLIETL 611


>gi|315098581|gb|EFT70557.1| threonyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
          Length = 689

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 146/455 (32%), Gaps = 44/455 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIYGPTHEEV 113
              +  P +    L+  SG    Y   M        +R+++               +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  T E +  
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-CTREQAPG 427

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +              +D+ + + F   D      
Sbjct: 428 EIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGSDEDWQVA 475

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                       L  + +      A      + ++ D++    ++S    +         
Sbjct: 476 TDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFNQPER--- 530

Query: 293 KYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG     + + S  +G++     V+   + G   +W   ++P ++ L
Sbjct: 531 -----FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---LSPVQVRL 582

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 583 VPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               V  + R       + L+E +   +   S +R
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 674


>gi|213692035|ref|YP_002322621.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254783509|sp|B7GR13|SYT_BIFLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213523496|gb|ACJ52243.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458147|dbj|BAJ68768.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 677

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 144/457 (31%), Gaps = 52/457 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMHLDEEYDADGNVTKPGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V  +     
Sbjct: 420 KDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDL 479

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P                       A      + +  D++    +VS   ++    F 
Sbjct: 480 VADPG--------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPV--ADEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + ++++ V  + R       + +++         +  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDKAREQILAVIAKR 662


>gi|116754929|ref|YP_844047.1| prolyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121694244|sp|A0B9N3|SYP_METTP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116666380|gb|ABK15407.1| prolyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 478

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 169/457 (36%), Gaps = 79/457 (17%)

Query: 10  ILQENPRDAEIAS--------HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIRE 59
           + ++  RDA++          H+L+    ++      KG+  W P G     +V  II+E
Sbjct: 1   MTKKEERDAKLPPKSNFSEWYHELLRSAEIVDVRYPVKGMSVWYPFGFALRSHVYQIIKE 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMT 115
             +           +   +   E+     +  E+  +     D  D  +   PT E  + 
Sbjct: 61  LLDVDHYETQFPLLIPETEFMKEAEHIKGFEDEVYWVTHGGRDPLDIKLALRPTSETAIY 120

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSY 174
            + +  I+S+ +LP   YQI   FR E +    ++R RE    K+A++   T E +    
Sbjct: 121 PMLKLWIRSHADLPLRIYQIVNTFRYETKHTRPLIRLREITSFKEAHTAHATWEEAAMQV 180

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 Y+  + RL   +IP      P     S +    AD                   
Sbjct: 181 EIAIQRYIEFYRRL---AIPCLVSKRP-----SWDKFPGAD------------------- 213

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                             D +  + R    G         GT +
Sbjct: 214 -----------------------------YSIALDVIMPDGRTLQVG----TAHLLGTNF 240

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN- 353
           +     T++   G+  YV    YGI + R +AA+I    D KG++ P  VAP ++ ++  
Sbjct: 241 AKTYEITYEDEHGEQRYVNQTCYGI-SERCIAALIAVHGDDKGLVLPWRVAPVQVVIVPI 299

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +   + C  I + L+     V  DD  E+ G++F   ++ G P+++ +G + + +
Sbjct: 300 IFGEREPIIEVCRSIASTLAGRNIRVRLDDGDERPGAKFYKWEMRGVPVRIEIGPRDIKN 359

Query: 414 SKVEIKHRLTGIREDMSLEE-VINYASHRFSNNRPVL 449
             V I  R  G+R+ + ++E +++         + VL
Sbjct: 360 GVVTIVRRD-GVRKTLPMDERLVDAILIEAEELQTVL 395


>gi|284166054|ref|YP_003404333.1| threonyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284015709|gb|ADB61660.1| threonyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 649

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 141/440 (32%), Gaps = 45/440 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQH----SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E  ++AE   H+ +     +         G+  + P G+  L  +   + +     G   
Sbjct: 241 ERKQEAEKRDHRRIGNEMNLFSIQDVTGPGLPLYHPPGKTVLKELEDFVEDLNKDAGYDY 300

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   DLW  SG Y++Y  +M    D  D      P +      IF+    SYR+L
Sbjct: 301 VETPHVFKTDLWHRSGHYENYQDDMFIF-DVGDDEFGLKPMNCPGHAAIFQDQSWSYRDL 359

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + +    +R E R    G+ R   F + D + F + P+  +    ++      +   
Sbjct: 360 PIRYAENGKVYRKEQRGELSGLSRVWAFTIDDGHLF-IRPDQIRQEVEEIMDMITDVLET 418

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             L+   M   + P     S E    A+     V  ++         +            
Sbjct: 419 FDLEY-EMALATRPEKSVGSDEIWDRAEEQLENVLENRAHDYEVEEGDG----------- 466

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      +    D++  +       ++                  + G D 
Sbjct: 467 ---------AFYGPKIDFAFEDAIGRSWDGPTVQLDFNMPER--------FDLNYVGEDN 509

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           ++H  V +     G+      ++   ++G+  +W   +AP ++ ++ I   +        
Sbjct: 510 EEHRPVMIHRALYGSYERFFMMLIEHYEGRFPLW---LAPEQVRVLPISDDN---LGYAH 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++          V  D     +  +   A     P Q+IVG     D  + ++ R     
Sbjct: 564 RVANEFDD--FRVEVDGRDSTLERKIRAAHDDRVPYQIIVGDNEEDDGNISVRDRFEDQE 621

Query: 427 EDMSLEEVINYASHRFSNNR 446
            D+ +E+   +        R
Sbjct: 622 YDVEIEDFKQHLEAEIEEQR 641


>gi|23465302|ref|NP_695905.1| threonyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227547263|ref|ZP_03977312.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|317483234|ref|ZP_07942229.1| threonyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|73919773|sp|Q8G6C2|SYT_BIFLO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23325940|gb|AAN24541.1| threonyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227212222|gb|EEI80118.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|316915303|gb|EFV36730.1| threonyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 677

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 148/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELTSLLTFVLNLLKDFGLTDFYLELSTKDPNKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                           N  +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------NLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA--DEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFS 443
           + ++++ V  + R      G+  D + E+++     R  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQ 664


>gi|194246566|ref|YP_002004205.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|254783531|sp|B3R0I8|SYT_PHYMT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193806923|emb|CAP18352.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 640

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 163/441 (36%), Gaps = 33/441 (7%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           L ILQE         +K +    +  +   G+  WL  G      +   I +++   G  
Sbjct: 230 LKILQERKMSDHKYINKDLNFFMLSQEVGLGLPFWLSKGSTIRRIIERYIVDKELIGGYE 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            +  P + + +++  SG  + Y   M    +  N +  +  P +      I+++ I SY+
Sbjct: 290 HVYTPVIANINIYSTSGHLEHYRDNMFPAMNMPNGEKYVLRPMNCPHHMMIYKNKIYSYK 349

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + DA+ F  T +  K  + K+      ++
Sbjct: 350 ELPIRIAELGMMHRLEKSGAVSGLERVREMTLNDAHIFIRT-DQIKEEFKKIVNFIQEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               + +   R                  D  + + + + D M     +   +    + L
Sbjct: 409 RDFDINNYIFRLSYR--------------DPLDKKKYFNDDEMWNKAENILKEIMLELKL 454

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N    +     A      + ++  +L   + +S+  I+    F    +++L    T+ G 
Sbjct: 455 N--FTEVQGEAAFYGPKLDVQVLTALGHEETLSSVQID----FLLPKRFNL----TYVGE 504

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK +  + +    +  M    + +   + G    W   +AP ++ LI I   + +    
Sbjct: 505 DGKKYSPILIHRCIVSTMERFFSYLLERYKGFFPFW---LAPLQVILIPINLDNHLI--Y 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +KI + L K G  V  +     +  +   A     P Q+++G K + D  +  +     
Sbjct: 560 AQKIKSILLKNGFRVEINQKDSTLSYKIREAQKWKIPYQIVIGDKEIKDDIITFREYKKD 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
           ++  M +++ I+    +    
Sbjct: 620 LQIMMKIDKFIHLLISKMKQK 640


>gi|108799209|ref|YP_639406.1| threonyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868325|ref|YP_938277.1| threonyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126434867|ref|YP_001070558.1| threonyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|122977050|sp|Q1B9T4|SYT_MYCSS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225465|sp|A3PYU0|SYT_MYCSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225466|sp|A1UF79|SYT_MYCSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108769628|gb|ABG08350.1| Ser-tRNA(Thr) hydrolase [Mycobacterium sp. MCS]
 gi|119694414|gb|ABL91487.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Mycobacterium
           sp. KMS]
 gi|126234667|gb|ABN98067.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Mycobacterium
           sp. JLS]
          Length = 684

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 137/452 (30%), Gaps = 51/452 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +  + G   +
Sbjct: 254 IEEAQRRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGIVRKELEDYSRAKHLQAGYEFV 312

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHEEVMTDI 117
           + P +    L+V SG  + Y   M      + +                 P +  +   I
Sbjct: 313 NTPHITKEQLYVTSGHLEWYADGMFPAMHIDAEYDADGAVRKPGQNYYLKPMNCPMHHLI 372

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +     
Sbjct: 373 YRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-ATREQMRDELTS 431

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S E    A     +V  +      P P  
Sbjct: 432 LLQFVLDLLSDYGLDEYYLELSTKDPDKYVGSDEIWDEATETLREVAEASGLDLVPDPG- 490

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L  N ++S   ++            
Sbjct: 491 -------------------GAAFYGPKISVQVKDALGRNWQMSTIQLDFNMPER------ 525

Query: 296 LPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG       +     G++     V+   + G    W   +AP ++  I +
Sbjct: 526 --FELEYTAADGSRQRPVLIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIPV 580

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E + A+L   G  V  D   +++  +         P  ++ G K V+  
Sbjct: 581 A---DAHIPYLEDVAAQLRSRGVRVEIDGSDDRMAKKIVNHTNQRVPFMLLAGDKDVAAG 637

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V  +         +  +E +          R
Sbjct: 638 AVSFRFGDRTQINGVPRDEAVEAIVGWIVERR 669


>gi|322691278|ref|YP_004220848.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456134|dbj|BAJ66756.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 677

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 148/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDVDGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELTSLLTFVLNLLKDFGLTDFYLELSTKDPNKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                           N  +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------NLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA--DEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFS 443
           + ++++ V  + R      G+  D + E+++     R  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQ 664


>gi|309775936|ref|ZP_07670928.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916218|gb|EFP61966.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 564

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/227 (40%), Positives = 135/227 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKDEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYKKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  I  R  L    ++A++G +GG LS EF  + + GE  V      
Sbjct: 181 YENIMERCDLTYKIVKADTGAMGGSLSEEFQAITEIGEDVVVTCDGC 227



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 3/183 (1%)

Query: 264 NEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                D  P   +     +GIEVG+ F  GTKY+  +   ++  + K H V+MG YG G 
Sbjct: 383 QVHEGDICPVCGKPLKFCKGIEVGNTFKLGTKYAKALGLEYQDVNNKLHPVEMGCYGFGL 442

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +AA++E  +D  GIIWP SVAPF+++++ + + D+       ++Y  L K G DV  
Sbjct: 443 ERCMAAIVEQHNDASGIIWPASVAPFEVAVVVVSSKDEEQMRIGNELYEALKKEGVDVLL 502

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+ G +F   +L+G P ++ VG + + D  VE + R      D++L EV+      
Sbjct: 503 DDRKERPGVKFKDMELIGIPYRITVG-RGIKDGNVEFRARTASESSDIALSEVVELVKKE 561

Query: 442 FSN 444
              
Sbjct: 562 LKK 564


>gi|225871275|ref|YP_002747222.1| prolyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|254782916|sp|C0M9E6|SYP_STRE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225700679|emb|CAW95268.1| prolyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 618

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 139/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 394 AVAGANKDGYHLTGVNPNRDFQAEYADIREVKEGETSPDRHGV--LQFARGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMAANILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQ  +D  E++ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQEAQDLTERVEASLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G P++V +G K  ++  VEIK + TG   ++  + +I   
Sbjct: 572 IGLPIRVTIGKK-AAEGIVEIKIKATGDSIEVHADSLIETL 611


>gi|119025818|ref|YP_909663.1| threonyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765402|dbj|BAF39581.1| threonyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
          Length = 711

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/459 (16%), Positives = 149/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 276 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 334

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 335 HHYSFVQTPHITKGGLYETSGHLQWYKDSMYPPMRLDEEKDENGNVIKQGFDYYLKPMNC 394

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 395 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 453

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 454 KDELKSLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVA------- 506

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                   D  D               A      + +  D++    +VS   ++    F 
Sbjct: 507 ---KESGLDLVDD----------PCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 549

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 550 LPERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 602

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +           +K  A L +       D   ++ G +   A     P  +IVG 
Sbjct: 603 VLGVPVA---DEFAPHLQKFIASLEEETVRCEIDLSDDRFGKKIRNASKSKAPFILIVGE 659

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRFS 443
           + ++++ V  + R       + ++E    ++     R  
Sbjct: 660 EDMNNNAVSFRFRDGSQLNGVPVDEAKANILTVIKKRVQ 698


>gi|332664741|ref|YP_004447529.1| Prolyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333555|gb|AEE50656.1| Prolyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 489

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 152/432 (35%), Gaps = 81/432 (18%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG +    P          E+     + KE   +
Sbjct: 33  GCMVIKPYGFAIWENIRDQLDKMFKETGHVNAYFPLFIPKSFLSKEAQHVAGFAKECAVV 92

Query: 97  ADRN------------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                                 ++ +I  PT E ++ D +R+ I SYR+LP    Q    
Sbjct: 93  THHRLMNDPDGGGIIVDPDSKLEEELIVRPTSETIIWDTYRTWINSYRDLPLLINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R   +R+ EFL ++ ++   T E +     K+    L I+             
Sbjct: 153 VRWEMRTRL-FLRTTEFLWQEGHTAHATKEEAVEETLKI----LDIYAT----------- 196

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   + E++                +   I + N  F        I          
Sbjct: 197 -------FAEEYMA-------------MPVIRGIKTANERFAGAEETYCIEAL------- 229

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                                + ++ G   + G  ++      F   + +  YV   S+G
Sbjct: 230 -----------------MQDGKALQAGTSHFLGQNFAKAFDVKFLNENNQQEYVWATSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           + + R++  +I +  D  G++ P  +AP ++ ++ I     V  +   KI A L   G  
Sbjct: 273 V-STRLMGGLIMTHSDDDGLVVPPKLAPTQVVIVPIPKPSPVIDEVVHKIMAALKAKGIR 331

Query: 379 VFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D DM  + G +FA  ++ G P+++ +G + +++ +VE+  R T  +    LE +  Y
Sbjct: 332 VKYDMDMKNRPGFKFAEHEMHGIPVRLAIGERDLANGQVEVARRDTKEKTQQPLEGIEQY 391

Query: 438 ASHRFSNNRPVL 449
                   +  L
Sbjct: 392 IEDLLVEIQANL 403


>gi|237785631|ref|YP_002906336.1| threonyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758543|gb|ACR17793.1| Threonyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 663

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/466 (15%), Positives = 145/466 (31%), Gaps = 57/466 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L   Q+   +AE   H+ +           +   G   + P G    + +    R 
Sbjct: 222 SKEALQEYQQRMEEAERRDHRRLGAELNLFSFPDEIGSGFPVFHPDGGIVRNEMEQHSRR 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYG 107
                G   +  P L   DL+ +SG  D Y   M      +++                 
Sbjct: 282 RHIEAGYSFVYTPHLTKGDLFQKSGHLDFYKDGMFPPMKLDEERDAEGNITKPAQDYYAK 341

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T
Sbjct: 342 PMNCPMHNLIFASKGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CT 400

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSK 225
            +  ++  + +    + +    GL    +   +  P     S E    +     +V    
Sbjct: 401 EDQLENELSTVLDFIISLLKDYGLDDFYLELSTKDPNKFVGSDEIWERSTEILRRVADKS 460

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                P P                       A      + +  D++    ++S   ++  
Sbjct: 461 GLDLVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD-- 498

Query: 286 HIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
             F    ++       +   DG K   + +     G++     V+   + G    W   +
Sbjct: 499 --FNLPERF----ELEYTAPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---L 549

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP ++  I +            ++  +L   G     D   +++  +         P  +
Sbjct: 550 APHQVVGIPVA---DEFSPYLGEVVDKLRARGVRAEVDISDDRMQKKIRNHTTHKAPFML 606

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS---HRFSNNRP 447
           + G +      V  +         + +E+ ++  S      +N +P
Sbjct: 607 LAGGRDAEAGAVSFRFLDGSQVNGVPVEKAVDVISTWVEEHNNEQP 652


>gi|170755400|ref|YP_001782969.1| prolyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|259511587|sp|B1IFI2|SYP_CLOBK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169120612|gb|ACA44448.1| prolyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 478

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 154/445 (34%), Gaps = 77/445 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +    +I           P G    +N+   +  +  
Sbjct: 14  MDEDFAQWYTDIVKKAELADYSSIRGCMIIR----------PNGYAIWENIQKYVDTKLK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   +S+P     +L   E    + +  E+  +    D  +       PT E +  + 
Sbjct: 64  EYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWVTHGGDDELAERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E +     +R+ EFL ++ ++   T E +       
Sbjct: 124 YAKIVQSYKDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETKEEA----ESH 178

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +  L ++ R                                   C        +  + T
Sbjct: 179 SLKILNMYSR----------------------------------LCEDMLAMPVVMGKKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +     +      +                          + ++ G   Y G  +S  
Sbjct: 205 DKEKFAGADDTYTIESL---------------------MHDGKALQAGTSHYLGQNFSKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  F   +GK  Y    ++ +   R++ A+I    D  G+  P  +AP +  +I +  H
Sbjct: 244 FAIQFSDRNGKLDYPHYTTWAVT-TRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  E++  RL+KV   V  DD  +  G +++  ++ G PL++ +G K +  ++  
Sbjct: 303 KEGVLEKAEELKERLAKV-VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +  R    +  +SL+E+        
Sbjct: 362 LVRRDNREKTIVSLDEIEIKVQEML 386


>gi|315180910|gb|ADT87824.1| prolyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 546

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/199 (49%), Positives = 134/199 (67%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +R GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDRAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRNEVSSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFDL  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDLDKQGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            S EF VLA++GE  +  S
Sbjct: 181 GSQEFHVLAESGEDLIVFS 199



 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 341 DGKHYFGINWGRDVALGKVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           + +  G DGK+  ++MG YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +  H 
Sbjct: 401 NCSVLGPDGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGIIWPDAIAPFQVAIVPMNMHK 460

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA LS  G DV +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 461 SERVQQAAEKLYAELSAAGIDVLFDDRKERPGVMFSDMELIGVPHTIVIGDRSMDEGNFE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +  +++++++ +   + +
Sbjct: 521 YKNRRNGEKTAIAIDQIVEHIKAQLA 546


>gi|305681479|ref|ZP_07404286.1| threonine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659684|gb|EFM49184.1| threonine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 687

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/458 (14%), Positives = 138/458 (30%), Gaps = 51/458 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L +    +   G   + P G      +    R    
Sbjct: 252 LAEYQHKMAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGGIVRLEMEEHSRRRHI 310

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTH 110
             G   ++ P L   +L+ +SG  D Y   M      + +                 P +
Sbjct: 311 AAGYSFVNTPHLTKGELFEKSGHLDFYADGMFPPMKLDGEVDADGNVTKPAVDYYTKPMN 370

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 371 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQ 429

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +     +    + +    GL    +   +  P     S E    +     +V       
Sbjct: 430 LEAELTSVLDFVISLLRDYGLDDFYLELSTKDPEKFVGSDEIWEKSTAILQRVADKSGLD 489

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P P                       A      + +  D++    ++S   ++    F
Sbjct: 490 LVPDPG--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----F 525

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               ++       +   DG K   + +     G++     V+   + G    W   +AP 
Sbjct: 526 NLPDRF----HLEYTAPDGTKKQPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPQ 578

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++  I +           E +   L   G     D   +++  +         P  ++ G
Sbjct: 579 QVMGIPVA---DTFIPHLESVINELQARGVRASVDTSDDRMQKKIRTYTQAKVPFMLLAG 635

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ V    V  +         + + + I+       + 
Sbjct: 636 ARDVEAQAVSFRFLDGSQLNGVPVAQAISLIDEWVRSR 673


>gi|183601640|ref|ZP_02963010.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683826|ref|YP_002470209.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190862|ref|YP_002968256.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196268|ref|YP_002969823.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|254783508|sp|B8DUF4|SYT_BIFA0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|183219246|gb|EDT89887.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621476|gb|ACL29633.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249254|gb|ACS46194.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250822|gb|ACS47761.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178601|gb|ADC85847.1| Threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793851|gb|ADG33386.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 692

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/455 (14%), Positives = 141/455 (30%), Gaps = 51/455 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L +    +   G+  + P G   ++ +    RE   +  
Sbjct: 244 YQTRMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREMHRKNH 302

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              +  P +    L+  SG    Y   M      +++                 P +  +
Sbjct: 303 YSFVQTPHITKGGLYETSGHLQWYKDGMYPPMHLDEEKDENGNIVKQGFDYYLKPMNCPM 362

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  K 
Sbjct: 363 HNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIY-CTREQMKD 421

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L++    GL    +   +        S E    A     +V          
Sbjct: 422 ELKNLLNFVLKVLKDYGLNDFYLELSTKDEHKFVGSDEIWEEATNTLAEVAEESGLELVA 481

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    +VS   ++    F   
Sbjct: 482 DPG--------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FNLP 517

Query: 292 TKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++ L     +   DG     V +     G++    A++   + G    W   +AP +  
Sbjct: 518 ERFQL----EYIAPDGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAW---LAPVQAL 570

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            + +        D   K    L +    V  D+  ++ G +   A     P  +I G + 
Sbjct: 571 GVPVADEFAPHLD---KFMNSLEEDLVRVETDNSDDRFGKKIRNASKSKVPYIIIAGEED 627

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++++ V  + R       + +++   +     +  
Sbjct: 628 MNNNAVSFRFRDGSQLNGVPVDQAKAWILETITKR 662


>gi|46191233|ref|ZP_00120366.2| COG0441: Threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|189439311|ref|YP_001954392.1| threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|238692055|sp|B3DRX5|SYT_BIFLD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189427746|gb|ACD97894.1| Threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
          Length = 677

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 148/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELTSLLTFVLNLLKDFGLTDFYLELSTKDPNKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                           N  +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------NLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA--DEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFS 443
           + ++++ V  + R      G+  D + E+++     R  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQ 664


>gi|291516871|emb|CBK70487.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Bifidobacterium
           longum subsp. longum F8]
          Length = 677

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 148/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHCK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELTSLLTFVLNLLKDFGLTDFYLELSTKDPNKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                           N  +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------NLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA--DEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFS 443
           + ++++ V  + R      G+  D + E+++     R  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQ 664


>gi|123965807|ref|YP_001010888.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|152112942|sp|A2BVH0|SYP_PROM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123200173|gb|ABM71781.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 600

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  K ++ ++ II +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKGGYIRRVNSGIYAYMPIMLKVIEKISNIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  A+LW  S R++ Y      M  L DR  K     PTHEEV+T+
Sbjct: 61  ELNNNGCSKLLLPQLHPAELWKRSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITN 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + E     Y K
Sbjct: 121 IASEIINSYKQLPLCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSKEDLSSFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           M  SY  IF   GL ++ + A+SG IGG  S EF+V AD GE  +  ++
Sbjct: 181 MERSYENIFKNCGLDTVGVDADSGAIGGAASKEFMVTADAGEDYILFTE 229



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 110/246 (44%), Gaps = 5/246 (2%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ-WTAPYAA 258
           G IG D++ E I  + + +       D     + S  +  + +          +      
Sbjct: 347 GYIGPDINDEVIKNSSSWDKSWIRIADHSANNLSSFVSGSNKVNFHKVFQTFSFIDNQFL 406

Query: 259 TSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            SD+ N K  D +      +    RGIE+GHIF  G KYS  ++A F   DGK   + MG
Sbjct: 407 ISDIRNAKKGDRISLESNEELKEKRGIEIGHIFQLGQKYSEKLNAKFSDKDGKLKNLWMG 466

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+  A IE +HD  GI WP  ++PF+I +I     D       E+IY      
Sbjct: 467 CYGIGVTRIAQAAIEQNHDENGISWPIQISPFEILIIPTNLKDPYQTKLTEEIYKEFESK 526

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DV  DD   + G +F  ADL+G P Q+I+G +   + +VE   R +  +  +S + ++
Sbjct: 527 KIDVLLDDRDVRAGVKFKDADLIGIPFQIIIG-RDSINKEVEFICRSSKRKIKISSQNLL 585

Query: 436 NYASHR 441
                 
Sbjct: 586 EKFISE 591


>gi|167044004|gb|ABZ08690.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG3K8]
          Length = 479

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 151/425 (35%), Gaps = 70/425 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           +++++T ++     KG+    P G    +++   + ++   TG     +P L    L   
Sbjct: 21  QVVIKTELVDYAPVKGLIVLRPDGYSIWESIKESLDKKLKETGHRNGFLPVLIPESLLAK 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E   ++    E+  +    +  +       PT E +   +F   IKS+R+LP        
Sbjct: 81  EKEHFEGLNPEVFWVTQSGNSEIGDRLALRPTSETLAYSLFSKWIKSWRDLPLKMNFWNS 140

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E++     +R+ EFL ++ ++   T    K    K     L ++     K+I    
Sbjct: 141 ALRAEIKGTKPFLRTSEFLWQEGHTVHAT----KDEAEKEVADILELYK----KTIEEEL 192

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S          E   F    + D                            
Sbjct: 193 AVPVITGKKS----------EKDKFVGAVYTDTL-------------------------- 216

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E+     + +++G   + G  +S P    +   +  + +    S+
Sbjct: 217 ---------------ESLMPDGKALQMGTSHFLGQNFSKPFDVKYLDENNVEAFAWQTSW 261

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSK 374
           G+ + R++  +I +  D KG++ P  VAP ++ +I I       +       +I   LS 
Sbjct: 262 GV-SWRLIGGMIMTHGDDKGLVLPPKVAPIQVVIIPIYYSNDEKENVLQTACQIKDSLSN 320

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               V  DD      G +F   ++ G P+++ +G K ++ ++V +  R    +  + ++ 
Sbjct: 321 NDIRVHLDDREHLTPGFKFNDWEMKGIPIRIEIGPKDIAKNQVVLVRRHNQTKISIGIDA 380

Query: 434 VINYA 438
           +    
Sbjct: 381 LTEKI 385


>gi|153938581|ref|YP_001392690.1| prolyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|171769234|sp|A7GIT0|SYP_CLOBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152934477|gb|ABS39975.1| proline--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320672|gb|ADG01050.1| proline--tRNA ligase [Clostridium botulinum F str. 230613]
 gi|322807661|emb|CBZ05236.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 478

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 154/445 (34%), Gaps = 77/445 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +    +I           P G    +N+   +  +  
Sbjct: 14  MDEDFAQWYTDIVKKAELADYSSIRGCMIIR----------PNGYAIWENIQKYVDTKLK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   +S+P     +L   E    + +  E+  +    D  +       PT E +  + 
Sbjct: 64  EYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWVTHGGDDELAERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E +     +R+ EFL ++ ++   T E +       
Sbjct: 124 YAKIVQSYKDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETKEEA----ESH 178

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +  L ++ R                                   C        +  + T
Sbjct: 179 SLKILNMYSR----------------------------------LCEDMLAMPVVMGKKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +     +      +                          + ++ G   Y G  +S  
Sbjct: 205 DKEKFAGADDTYTIESL---------------------MHDGKALQAGTSHYLGQNFSKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  F   +GK  Y    ++ +   R++ A+I    D  G+  P  +AP +  +I +  H
Sbjct: 244 FAIQFSDRNGKLDYPHYTTWAVT-TRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  E++  RL+KV   V  DD  +  G +++  ++ G PL++ +G K +  ++  
Sbjct: 303 KEGVLEKAEELKERLAKV-VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +  R    +  +SL+E+        
Sbjct: 362 LVRRDNREKTIVSLDEIEIKVQEML 386


>gi|300123658|emb|CBK24930.2| unnamed protein product [Blastocystis hominis]
          Length = 457

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/429 (27%), Positives = 197/429 (45%), Gaps = 52/429 (12%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           +YS+LPLGQ+ LD V  II       GA +M +P +Q+ + W++SGR D  GKE+  L D
Sbjct: 1   MYSFLPLGQRVLDEVEKIIDRNLETIGAQKMQMPIVQNLNRWMKSGRRDQIGKELYTLKD 60

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R  + +   PT+EEV+T++ +  + +  N P   YQ   KFRDE+R + GV+RS+EFLM 
Sbjct: 61  RKGQELCLSPTNEEVITELVKDLVATPSNYPLMLYQTSPKFRDEMRLKAGVLRSKEFLMM 120

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D YSFD   + +  +++++   +  IF  L +    + A++G +GG  S E+      GE
Sbjct: 121 DLYSFDTNLKKANETFDQVDTCFSNIFRELEIPVEALEADNGIMGGSRSKEYQCCCGVGE 180

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +V          +                        ++TS       F S   N+ + 
Sbjct: 181 DRVTRCSKCGYKSL----------------------YTSSTSIPTVIDYFFSETFNQLLF 218

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +E+GH F  G +YS   +   +G+      +QMG YG+G  R+V ++ E      GI
Sbjct: 219 QQSLELGHSFVLGDRYSTLFNLQNRGS-----PLQMGCYGLGVSRIVGSLFELFGHSSGI 273

Query: 339 IWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVG--CDVFWDDMGE-QIG 389
           ++PD +  F + ++N           +    A  K    L  +G    + +DD  E   G
Sbjct: 274 LFPDPITTFDVVVLNTGTPIDRVFESEKTEAARAKTAELLDALGDALRICFDDRDELSAG 333

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIK--HR--------------LTGIREDMSLEE 433
           ++   A+L+G  + VI G +F     +E++  HR                G  E    EE
Sbjct: 334 NRLMDAELMGARVAVIAGKEFAMGGNLEVRLLHRNVIRDVWRNEEMGKRGGNVETKKKEE 393

Query: 434 VINYASHRF 442
           + +    + 
Sbjct: 394 ISDVLREKI 402


>gi|229009880|ref|ZP_04167100.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
 gi|228751498|gb|EEM01304.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
          Length = 476

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 158/453 (34%), Gaps = 77/453 (16%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             +G   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 61  KESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCIRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E +     +R+ EFL ++ +    T   +      
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGH----TIHETAEESQI 175

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++ L ++                                    FC +      I  + 
Sbjct: 176 ETLNILNLY----------------------------------AAFCEEYLAIPVIKGQK 201

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T+ +      +     +                          + ++ G    FGT +S 
Sbjct: 202 TEKEKFAGAKATYTIESL---------------------MHDGKALQTGTSHNFGTNFSE 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 241 AFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQ 299

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 300 HKEGVLEKATELQGRIQKV-ARVKIDASNKTPGWKFNEYEMKGVPIRLEVGPKDIEKNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R T  +E +S++++              L
Sbjct: 359 VLVRRDTKEKEFISMDQLEERIPVLLEEIHHSL 391


>gi|210623134|ref|ZP_03293600.1| hypothetical protein CLOHIR_01550 [Clostridium hiranonis DSM 13275]
 gi|210153811|gb|EEA84817.1| hypothetical protein CLOHIR_01550 [Clostridium hiranonis DSM 13275]
          Length = 580

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 107/231 (46%), Positives = 136/231 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P  +E P D EI SHKLM+R+GMI + + GIY+ LPLG K    +  II+EE
Sbjct: 17  MRFSKMFIPTKREIPTDVEIESHKLMIRSGMIKKSASGIYNQLPLGLKVERKIENIIKEE 76

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM    L  ++LW ESGR+   G EM RL DR  K    GPTHEEV TDI R 
Sbjct: 77  VEDADFREMLCSALIPSELWQESGRWARRGAEMFRLEDRTGKEFCLGPTHEEVFTDIVRQ 136

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE +PRFG +R++ F M DAYSFD   E    SY +M  +
Sbjct: 137 EVSSYKQLPVKLYQIQSKYRDEKKPRFGAIRTKSFTMFDAYSFDKDEESLNKSYEEMIAA 196

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           + RIF R G+K   + AESG  G   S EF+V ++ GE ++    D     
Sbjct: 197 FKRIFDRCGVKYSLVEAESGIEGAPSSIEFMVKSEIGEDELAICSDCTYAA 247



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 3/190 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N +  D  P+        RGIE+GHIF  G K+S  M+A ++  +  D Y+
Sbjct: 391 FEGTVGDFRNVREGDKCPKCGAPLKIRRGIEIGHIFKAGQKFSENMNAMYRSEEETDEYI 450

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +G Y IG  R+ A +IE + D  GI+WP SVAPF++ +I +   ++   +  E+IY  L
Sbjct: 451 HLGCYEIGTERLTATIIEQNFDADGIVWPLSVAPFEVEIIPVNLKNEDVVNTAERIYKEL 510

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +G DV  DD   + G++F  +DL+G P+++ VG + + +  VE+K R +  RE +S  
Sbjct: 511 KLMGVDVLIDDRDARPGTKFKDSDLIGIPVRITVG-RDLKEGLVEMKFRNSEERELISAV 569

Query: 433 EVINYASHRF 442
           +       R 
Sbjct: 570 DAAEIVRDRL 579


>gi|322373816|ref|ZP_08048351.1| proline--tRNA ligase [Streptococcus sp. C150]
 gi|321277188|gb|EFX54258.1| proline--tRNA ligase [Streptococcus sp. C150]
          Length = 620

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/244 (41%), Positives = 149/244 (61%), Gaps = 2/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++   AI+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAVTP--ERTDLDRWVVLDKSIASLDEIPE 238

Query: 241 DIIS 244
           D++ 
Sbjct: 239 DVME 242



 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVVGANEDGYHLTGVNPERDFKAEYVDIREVKEGEISPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +AP+ + LI +   D+      E++ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKDLAPYDVHLITVNTKDEEATALTERLEAALMAEGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + TG   +++ + +I   +
Sbjct: 572 IGLPIRVTVGKK-ASEGVVEVKIKATGDTIEVNADNLIETLA 612


>gi|261212071|ref|ZP_05926357.1| prolyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260838679|gb|EEX65330.1| prolyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 546

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/199 (48%), Positives = 134/199 (67%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVETIVRQEIDNAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+++  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHERPFVLSPTAEEVITALVRNEVNSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKDGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCS 224
            S EF VLA++GE  +  S
Sbjct: 181 GSQEFHVLAESGEDLIVFS 199



 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 341 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 401 NCGVLDSNGKNVILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDALAPFQVAIVPMNMHK 460

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 461 SERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFE 520

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 521 YKNRRQGEKEAVAMESIIDFIQAKLA 546


>gi|229131392|ref|ZP_04260291.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
 gi|228652083|gb|EEL08021.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
          Length = 476

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 158/453 (34%), Gaps = 77/453 (16%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             +G   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 61  KESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCIRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E +     +R+ EFL ++ +    T   +      
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGH----TIHETAEESQI 175

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++ L ++                                    FC +      I  + 
Sbjct: 176 ETLNILNLY----------------------------------AAFCEEYLAIPVIKGQK 201

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T+ +      +     +                          + ++ G    FGT +S 
Sbjct: 202 TEKEKFAGAKATYTIESL---------------------MHDGKALQTGTSHNFGTNFSE 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 241 AFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQ 299

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 300 HKEGVLEKATELQGRIQKV-ARVKIDASNKTPGWKFNEYEMKGVPIRLEVGPKDIEKNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R T  +E +S++++              L
Sbjct: 359 VLVRRDTKEKEFISMDQLEERIPVLLEEIHHSL 391


>gi|312132685|ref|YP_004000024.1| thrs [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689212|ref|YP_004208946.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis
           157F]
 gi|311773642|gb|ADQ03130.1| ThrS [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460548|dbj|BAJ71168.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 677

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 148/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELTSLLTFVLNLLKDFGLTDFYLELSTKDPNKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                           N  +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------NLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA--DEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFS 443
           + ++++ V  + R      G+  D + E+++     R  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDKAREQILTVIKKRVQ 664


>gi|27904721|ref|NP_777847.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|46396631|sp|Q89AN7|SYP_BUCBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27904118|gb|AAO26952.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 574

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/231 (42%), Positives = 149/231 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  KY    L+E P +++  SH LMLR G+I Q++ G Y WLP G + L  V  II+ E
Sbjct: 1   MQARKYLFSTLKETPHNSDCISHALMLRAGIIRQNTSGTYIWLPTGLRILKKVIRIIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+++P LQ  +LW  S R  +YG+E+ ++ DR +K  I GPTHEE++T   ++
Sbjct: 61  MKQCGAMEIAMPFLQKKNLWDLSKRVITYGQELFQVTDRTNKKFILGPTHEEMITYFIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE+RPRFG++R++EF+MKDAYSF +     + +YN M+ +
Sbjct: 121 ELQSYKQLPLILYQIQTKFRDEIRPRFGIIRTKEFMMKDAYSFHINMLSLEKTYNLMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y++IF ++ LK   + A+SG +GG  SHEF   ++TGE  +  S       
Sbjct: 181 YIKIFKKMKLKFYAVEADSGLMGGLKSHEFQAPSNTGEDVIVLSTQSNYLA 231



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 3/200 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSAT 301
             N++          T D+      D  P+   +    + IE+ HIF  G KYS  M+  
Sbjct: 371 YFNNMNWNKDISIPQTYDIRYVLEGDPSPDGAGELKMQKSIEIAHIFQLGKKYSKIMNVK 430

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV- 360
            +   GK   + MG YGIG  R++AA+IE ++D  GIIWPDS+APF I++I +  H    
Sbjct: 431 IQNKIGKKDTLIMGCYGIGITRIIAAIIEQNNDKNGIIWPDSIAPFTIAIIPVCFHKSTL 490

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   EKIY    K   D   DD  + +    +  +L+G P  +I+  K + +  VE + 
Sbjct: 491 VKQQSEKIYNFCKKNNIDALLDDRKQNLSITLSEIELIGIPYSIIISEKLLKNDMVEYRE 550

Query: 421 RLTGIREDMSLEEVINYASH 440
           R   +++ ++   V     +
Sbjct: 551 RHKNVKKIINKNHVFKIILN 570


>gi|308464804|ref|XP_003094666.1| CRE-PARS-2 protein [Caenorhabditis remanei]
 gi|308247063|gb|EFO91015.1| CRE-PARS-2 protein [Caenorhabditis remanei]
          Length = 470

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 201/457 (43%), Gaps = 66/457 (14%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           A+H++++  G I    KG YS LPLGQ+ +D +  I+  E  + GA+++ +P + +  LW
Sbjct: 21  AAHRMLIENGFILPTGKGFYSLLPLGQRVIDKLCRILDTEFQKAGAMKIGMPIVGTKTLW 80

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKF 139
            ++ R+D+ G EM++L DR    +   PT EE+ T++  S     +   P   YQI  KF
Sbjct: 81  DKTKRWDAMGTEMIKLEDRQKAPLCLQPTAEEMCTELIASLPPLKKSQFPVMIYQIGDKF 140

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-------------- 185
           RDE+ PRFG+MRSR+FLMKD Y+F    E S+ +Y K+   Y +IF              
Sbjct: 141 RDEMNPRFGLMRSRQFLMKDMYTFSTDQEASRETYRKICRVYEKIFGQQLQLGGDLIKPI 200

Query: 186 ---HRLGL----KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              +RL L        + A+SG  GG +SHE+ + ++  E  V        F    + T 
Sbjct: 201 SGQNRLNLILNYSLFQVEADSGIHGGHISHEYHLRSNLDEDFVNLCDSCGTFNKSEDVTT 260

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                + +S                           K      +E+ H F+ GTKYS  +
Sbjct: 261 LKKCPNCDSA------------------------HQKSRKVSSVEIAHTFHLGTKYSETI 296

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKA- 356
            A F+G       + M  +GIG  R++ A ++      K +  P ++APF  ++I  K+ 
Sbjct: 297 GAKFQG-----KPLDMCCFGIGVSRLLPATVDLLSCSEKAMRLPRAIAPFDAAIIVKKSL 351

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI---VGSKFV- 411
              V  +      +R  K G     DD  E   G +   A+ LG P  ++   V  + + 
Sbjct: 352 MSNVIVEMTSSSASRYLKGGI--LLDDRIEMSAGRRIHEANRLGIPFIIVLANVTERSLV 409

Query: 412 -SDSKVEIKHRLTG-----IREDMSLEEVINYASHRF 442
                +E+               M+L+  +++     
Sbjct: 410 TQKPVIEVFTTHPKSEEPCDHGPMTLDRFVSFVQSSL 446


>gi|229825871|ref|ZP_04451940.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
 gi|229789891|gb|EEP26005.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
          Length = 604

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/456 (15%), Positives = 156/456 (34%), Gaps = 55/456 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +++E   RD +    KL L   M ++ + G+  WLP G +    +    R+   +
Sbjct: 170 KAHLNLIREALERDHKKLGPKLDLF--MFNETAPGMPYWLPRGWRLYQELINFWRKIHVK 227

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---------------AMIYGP 108
            G  E+S P + +  LW+ SG +  Y   M  +   +D                     P
Sbjct: 228 HGYQEISAPIINNRKLWLISGHWAHYVNNMFIIPGFDDDLTQRTLQNIELDSDSTFAAKP 287

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +       ++  + SY+ LP  + +I +  R E   +  G+ R +EF   D ++F +  
Sbjct: 288 MNCPNAMLTYKRTVHSYKELPIRYNEIDVIHRKEKSGQLNGLFRVQEFRQDDDHTFVM-E 346

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +     +     +I+   G+        + P       E    A+    ++      
Sbjct: 347 SQIEEEIADVMEVADQIYSTFGITYR-AELSTRPEDFMGDIEVWDRAEAALKKIL----- 400

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                        D        E      A      + ++ D+L    +     ++    
Sbjct: 401 -------------DKKYGEGGYEVNEGDGAFYGPKIDLQMKDALGREWQCGTIQLDFQLP 447

Query: 288 FYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                        T++ +DG     V +     G+      ++  ++ G+   W   ++P
Sbjct: 448 HN--------FELTYQDSDGTIKEPVVIHRAIFGSFERFIGILIENYKGEFPFW---ISP 496

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           ++++++ I+       +  ++I   L ++G  V  +   + +  +     L+  P  ++V
Sbjct: 497 YQVAIVPIRT---EHNEYAKEIEDALYEMGIRVEANYDDKNMNEKIKGFKLMKDPYIIVV 553

Query: 407 GSKFVSDSKVEIKHRLTGIR-EDMSLEEVINYASHR 441
           G K   +  V I  R    +   + L+         
Sbjct: 554 GDKEKEERTVSITVRGQKQQMHGVPLDTFYKMIRKL 589


>gi|296454199|ref|YP_003661342.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183630|gb|ADH00512.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 677

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 148/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHE 111
                +  P +    L+  SG    Y   M      +++                 P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELTSLLTFVLNLLKDFGLTDFYLELSTKDPNKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                           N  +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------NLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +   DG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +   D+        + + L         D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA--DEFAPHLAGFVKS-LEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFS 443
           + ++++ V  + R      G+  D + E+++     R  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDKAREQILTVIKKRVQ 664


>gi|311739567|ref|ZP_07713402.1| threonine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305383|gb|EFQ81451.1| threonine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 687

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/457 (15%), Positives = 147/457 (32%), Gaps = 52/457 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +  +++E   RD      +L L +    +   G   + P G      +    R    +
Sbjct: 253 EAYQTMVEEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGATVRMEMENHSRNRHVQ 311

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTHE 111
            G   ++ P +   DL+ +SG  D Y   M          D         +     P + 
Sbjct: 312 AGYSFVNTPHITKGDLFKKSGHLDFYADGMFPPMQLDGEYDEEGNTVKEPQDYYAKPMNC 371

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  
Sbjct: 372 PMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQLE 431

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           +    K+    + +    GL    +   +  P     S E    + +    V        
Sbjct: 432 EEL-TKVLDFIISLLKDYGLSDFYLELSTKDPNKFVGSDEIWERSTSILQSVAEKSGLEL 490

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P P+                      A      + +  D++    ++S   ++    F 
Sbjct: 491 VPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FN 526

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  +DG K   + +     G++     V+   + G    W   +AP +
Sbjct: 527 LPERF----ELEYTASDGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQ 579

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  I +           E++ A+L + G     D   +++  +         P  ++ G+
Sbjct: 580 VVGIPVADEFSPHL---EEVAAQLRQKGIRADVDTSDDRMQKKIRNHTTGKVPFMLVAGA 636

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V    V  +         + ++E +   +   +  
Sbjct: 637 RDVEADAVSFRFLDGTQVNGVPVKEAVELIAAWVAER 673


>gi|256394768|ref|YP_003116332.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256360994|gb|ACU74491.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 409

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/436 (21%), Positives = 152/436 (34%), Gaps = 44/436 (10%)

Query: 22  SHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R  G+         G+  WLP G      V   IR  + R G   +  P L   
Sbjct: 7   DHRRLGRELGLFDTDPLIGAGLPYWLPDGAVVRHAVEEYIRSVERRAGYQHVYSPVLGKR 66

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +L+  SG +  Y ++M    D   + M+  P+       I+RS   SYR LP    +I  
Sbjct: 67  ELYEISGHWSHYSEDMFPPMDLGAEQMVLRPSLCPTHALIYRSRAHSYRELPLRMAEIGG 126

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            FR E+     G+ R R   + DA+ F  T E                +  LG+++  +R
Sbjct: 127 MFRSEMSGALGGLTRVRAITLNDAHIF-CTLEQVAQEAQDALKLIRDAYEALGIEAARIR 185

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 GG                 +  K  M     +   +  D   L     +  A +
Sbjct: 186 LSLPGPGG----------------KYVDKPQMWQRATAMLREVLDASGLAYEEAEGEAAF 229

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-G 315
                  + ++ D       +S   I+      F  +Y         GADG  H   M  
Sbjct: 230 --YGPKIDIQIADPAGRESTLSTVQIDFHQPEQFALEY--------IGADGARHRPVMVH 279

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              +G+M  V A +   H G    W   +AP +++++ +   +     A    +     +
Sbjct: 280 RSIVGSMERVVAHLIEQHGGAFPAW---LAPVQVAVLPVGEDEAG---AARAFHDLCLDL 333

Query: 376 GCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G      D   G  +G++   A L   P Q ++G +  +   V I+ R     E MS+ E
Sbjct: 334 GLRSELMDPERG-SLGARIREARL--VPYQAVIGGREAAADAVAIRLRDGRKLEPMSVAE 390

Query: 434 VINYASHRFSNNRPVL 449
                  R +    VL
Sbjct: 391 AGKRMVERVAARGKVL 406


>gi|28572736|ref|NP_789516.1| prolyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|81839165|sp|Q83HI1|SYP_TROW8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28410869|emb|CAD67254.1| prolyl-tRNA synthetase [Tropheryma whipplei TW08/27]
          Length = 601

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 134/232 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +     +E+P   E   +  +LR G I Q   GI+SW+PLG K    +  IIR E 
Sbjct: 4   KVSDFLFRTFREDPATTESRGYGFLLRAGYIRQTGSGIFSWMPLGLKVRHKIENIIRYEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  AIE+  P L SADL+ +SGR+  YG ++ RL DR     +  PTHEE  T + +  
Sbjct: 64  RQVNAIEVLFPALFSADLFKQSGRWSEYGDDIFRLKDRRQGDYLLAPTHEEAFTQMMKEI 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+LP T YQIQ K+RDELRPR G++RSREF MKDAYSFDL  +G + SY     +Y
Sbjct: 124 CTSYRDLPRTVYQIQDKYRDELRPRAGLLRSREFSMKDAYSFDLDEKGLRQSYEAQKRAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +IF RL +  + ++A +G +GG +S EF+   + G+     + D   F   
Sbjct: 184 KKIFDRLEIDYVIVKANAGAMGGSVSEEFLHPTEMGDDTFVVTADGSAFNAE 235



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D          RGIE+GH+F  G KYS  +       DG +  V MGSYGIG  R+ A 
Sbjct: 419 GDKSEWGPVTVKRGIEIGHLFQLGLKYSNALGLKVLDKDGYNKAVFMGSYGIGVSRLFAL 478

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           + E + D +G+ WP  +APF + ++ + +          ++   L+  G DV  DD    
Sbjct: 479 IAEKNCDERGLKWPAVLAPFDLHVVLLSSARA-------ELIDSLTDCGLDVLVDDRRVS 531

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G +F  A L+G P  +++G K   +  VE+  R    R  + L+E+I     R
Sbjct: 532 PGVKFTDAQLIGVPKIIVIGDKTRGED-VEVWDRANDQRTVLPLKEMIQGVIQR 584


>gi|332365812|gb|EGJ43569.1| proline--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 616

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/215 (45%), Positives = 138/215 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I   
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVHD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y +IF R  L    +  + G +GG  S EF+ +  
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSESMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+      ++I A L   G +V  DD  E
Sbjct: 501 TPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALALTDQIEANLLSAGYEVLVDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + G +F+ +DL+G P++V VG K  ++  VE+K + TG   ++  + ++   S
Sbjct: 561 RAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATGDTIEVHSDNLLETLS 612


>gi|261337772|ref|ZP_05965656.1| threonine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277225|gb|EFA23079.1| threonine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 681

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/455 (15%), Positives = 140/455 (30%), Gaps = 51/455 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L +    +   G+  + P G   ++ +    R+   R  
Sbjct: 244 YQQRMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSRDMHRRHH 302

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              +  P +    L+  SG    Y   M      +++                 P +  +
Sbjct: 303 YSFVQTPHITKGKLYETSGHLQWYKDGMYPAMHLDEEKDAEGNIVKQGFDYYLKPMNCPM 362

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  K 
Sbjct: 363 HNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIY-CTREQMKD 421

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    L++    GL    +   +        S E    A     +V          
Sbjct: 422 ELKNLLQFVLKLLKDYGLNDFYLELSTKDEHKFVGSDEIWEEATNTLAEVAKDSGLELVA 481

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    +VS   ++      FG
Sbjct: 482 DPG--------------------GAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFG 521

Query: 292 TKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            +Y           DG     V +     G++    A++   + G    W   +AP +  
Sbjct: 522 LEY--------IAKDGTHQRPVMIHRALFGSIERFFAILLEHYAGALPAW---IAPVQAL 570

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            + +           ++    L +    V  D   ++ G +   A     P  +IVG + 
Sbjct: 571 GVPVA---DEFAPHLQRFMDSLEEDLVRVEIDLSDDRFGKKIRNASKSKVPFILIVGEED 627

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +S++ V  + R       + +++   +     +  
Sbjct: 628 MSNNAVSFRFRDGSQLNGVPVDDARQWILKAINER 662


>gi|217974767|ref|YP_002359518.1| tRNA synthetase class II [Shewanella baltica OS223]
 gi|217499902|gb|ACK48095.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS223]
          Length = 398

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 140/435 (32%), Gaps = 44/435 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +     + +L L        + G+  W P G     ++   +R    R G  E++ P   
Sbjct: 2   KTHREIAEQLDLF--HSEPQAPGMIFWHPNGWVLFRDIQEHMRRVYRRNGFEEVNTPVFM 59

Query: 76  SADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +LW  SG  D + + M       N    +  P        +F+  + S+R+LP   ++
Sbjct: 60  KKELWQTSGHMDMFAENMFFGGGKENMDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFE 119

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++
Sbjct: 120 FGLVHRNESSGSLNGCLRARQFTQDDAHVFCCWS-QAEEEIRGFLQRAKQVYGDYGYHNL 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  + P     S E    A          + F       E   +   I L+       
Sbjct: 179 DVKISTKPEKALGSDEQWCRAQKLLDSACQIEGFDAEYQAGEGAFYGPKIELSLTDSM-- 236

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGK-DH 310
                                     R  + G I +    ++LP      +    G+ + 
Sbjct: 237 -------------------------GRRWQCGTIQF---DFNLPERFDVHYTNEQGEFER 268

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V M     G++     ++     G     PD + P  +++ ++    +       ++  
Sbjct: 269 PVIMHQAMYGSIERWLGILLEVSQGN---LPDWLHPVPVAIASVN---ESNSQFVRQLAT 322

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                   V  D     +  +         P  + VG K  ++  V +K R  G+   + 
Sbjct: 323 LCLARDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVMTHIP 382

Query: 431 LEEVINYASHRFSNN 445
           L E+ NY + +    
Sbjct: 383 LAELANYLADKLERK 397


>gi|120403545|ref|YP_953374.1| threonyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|166225469|sp|A1T868|SYT_MYCVP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119956363|gb|ABM13368.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 691

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 145/451 (32%), Gaps = 55/451 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 258 IEEAQKRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGVVRRELEEYSRRKHIEAGYEFV 316

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRN------------DKAMIYGPTHEEVMTDI 117
           + P +    L++ SG  + Y   M      +             +     P +  +   I
Sbjct: 317 NTPHITKEHLYITSGHLEWYADGMFPAMHIDAEYNDDGTVRKPGQDYYLKPMNCPMHHLI 376

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ +  T E  +    +
Sbjct: 377 YRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CTREEMRDELAR 435

Query: 177 MFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +    L +    GL    +   +  P     S +    A     +V  S      P P  
Sbjct: 436 LLQFVLDLLADYGLDDFYLELSTKDPDKFVGSDDMWEEATETLREVAESSGLHLVPDPG- 494

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A      + ++ D+L  N ++S   ++            
Sbjct: 495 -------------------GAAFYGPKISVQVRDALGRNWQMSTIQLDFNMPDR------ 529

Query: 296 LPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG +   V +     G++     V+   + G    W   +AP ++  I +
Sbjct: 530 --FELEYTAADGTRKRPVLIHRALFGSIERFFGVLTEHYAGAFPAW---LAPVQVVGIPV 584

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D    + A+L  +G     D   +++  +         P  ++ G + V   
Sbjct: 585 ADDHIRYLDG---LVAQLRALGIRAEVDTSDDRMAKKIVNHTNQKVPFMLLAGDRDVEAE 641

Query: 415 KVEIK--HRL--TGIREDMSLEEVINYASHR 441
            V  +   R    G+  + ++  ++++ + R
Sbjct: 642 AVSFRFGDRTQVNGVPREQAVAAIVDWVTRR 672


>gi|15237183|ref|NP_200065.1| OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/
           nucleotide binding / proline-tRNA ligase [Arabidopsis
           thaliana]
 gi|10177035|dbj|BAB10183.1| prolyl tRNA synthetase [Arabidopsis thaliana]
 gi|34365755|gb|AAQ65189.1| At5g52520 [Arabidopsis thaliana]
 gi|51970984|dbj|BAD44184.1| prolyl tRNA synthetase [Arabidopsis thaliana]
 gi|332008841|gb|AED96224.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 543

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/462 (17%), Positives = 154/462 (33%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +    AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 69  RSQDFNAWYLDVIASAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 118

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 119 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTVGGGKELEEKLVVRPTSETIVNHM 178

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP    Q     R E+R     +R+ EFL ++ ++   TPE ++    +M
Sbjct: 179 FTQWIHSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATPEEAEKEAKQM 237

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+ R                                     +      IP   +
Sbjct: 238 IE----IYTRFAF----------------------------------EQTAIPVIPGRKS 259

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +     +                                 + ++ G     G  +S  
Sbjct: 260 KLETFAGADITYTIEAM---------------------MGDRKALQAGTSHNLGQNFSRA 298

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F   +G+  +V   S+ + + R V  +I +  D  G++ P  +AP ++ ++ I   
Sbjct: 299 FGTQFADENGERQHVWQTSWAV-STRFVGGIIMTHGDDTGLMLPPKIAPIQVVIVPIWKK 357

Query: 358 DQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
           D        A   +   L   G  V  DD  ++  G +F   ++ G PL++ +G + VS 
Sbjct: 358 DTEKTGVLSAASSVKEALQTAGVRVKLDDTDQRTPGWKFNFWEMKGIPLRIEIGPRDVSS 417

Query: 414 SKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPVL 449
           + V +  R      G    +S+E   ++ Y   +    +  L
Sbjct: 418 NSVVVSRRDVPGKAGKVFGISMEPSTLVAYVKEKLDEIQTSL 459


>gi|289617913|emb|CBI55490.1| unnamed protein product [Sordaria macrospora]
          Length = 497

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 154/476 (32%), Gaps = 77/476 (16%)

Query: 15  PRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           P   E   H+ +       M   +S G   +LP G +  + +   +R++    G  E+  
Sbjct: 47  PAKPEAPDHRDLGTQQELFMTSIYSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQEVIT 106

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRS 120
           PT+    LW +SG  ++Y  +M  +                      P +      IF +
Sbjct: 107 PTIYKKALWAKSGHLENYADDMFTVTSTSPSRADVTEAGEVDEYGLKPMNCPGHCLIFAA 166

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP  +       R+E+     G+ R R F   D + F   P   +   +K   
Sbjct: 167 QKRSYRDLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIF-CRPNQIEDEISKTLE 225

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              R++    L S  ++  + P     S E    A+    +   +          +    
Sbjct: 226 FIRRVYKDFRLGSYRLKLSTRPENYMGSLEDWEHAEGSLKRALDTSGEPWTLNEGDG--- 282

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  L DS  +  + +   ++    F    ++ L   
Sbjct: 283 -----------------AFYGPKIDVILKDSDGKEHQTATIQLD----FQLPKRFELEYQ 321

Query: 300 A----------TFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           A          T    +     G    V +    +G+   + A++    +GK   WP  +
Sbjct: 322 APAPELEAKGETTTDPELLAVSGPVRPVMIHRAVLGSAERMFALLIEHFNGK---WPFWL 378

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSK----------VGCDVFWDDMGEQIGSQFAV 394
            P +  ++ +    +       K    L             G  +  DD    +  +   
Sbjct: 379 NPRQAIVLTVN-DSEPVLQFARKTQRVLLGTDSADSHVSPSGLAIDLDDSARSLSLKIRE 437

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEI---KHRLTGIR-----EDMSLEEVINYASHRF 442
           A   G+ + ++VG K V++  V +       TG +       M+ EE++ +   + 
Sbjct: 438 AKTRGYGMVIVVGPKDVANGTVAVDATGGLHTGDKPAQKNLVMAPEELLQFMKAKV 493


>gi|168182030|ref|ZP_02616694.1| proline--tRNA ligase [Clostridium botulinum Bf]
 gi|182674785|gb|EDT86746.1| proline--tRNA ligase [Clostridium botulinum Bf]
          Length = 478

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 154/445 (34%), Gaps = 77/445 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +    +I           P G    +N+   +  +  
Sbjct: 14  MDEDFAQWYTDIVKKAELADYSSIRGCMIIR----------PNGYAIWENIQKYVDTKLK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   +S+P     +L   E    + +  E+  +    D  +       PT E +  + 
Sbjct: 64  EYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWVTHGGDDELAERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E +     +R+ EFL ++ ++   T E +       
Sbjct: 124 YAKIVQSYKDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETKEEA----ESH 178

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +  L ++ R                                   C        +  + T
Sbjct: 179 SLKILNMYSR----------------------------------LCEDMLAMPVVMGKKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +     +      +                          + ++ G   Y G  +S  
Sbjct: 205 DKEKFAGADDTYTIESL---------------------MHDGKALQAGTSHYLGQNFSKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  F   +GK  Y    ++ +   R++ A+I    D  G+  P  +AP +  +I +  H
Sbjct: 244 FAIQFSDRNGKLDYPHYTTWAVT-TRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +++  +L+KV   V  DD  +  G +++  ++ G PL++ +G K +  ++  
Sbjct: 303 KEGVLEKAKELKEKLAKV-VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +  R    +  +SL+E+        
Sbjct: 362 LVRRDNREKTIVSLDEIEIKVQEML 386


>gi|170055177|ref|XP_001863466.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167875210|gb|EDS38593.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 315

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 107/319 (33%), Positives = 159/319 (49%), Gaps = 31/319 (9%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADL 79
            S +LML  G+I Q   G +  +PL Q++L     ++         A ++++P L +A L
Sbjct: 12  KSQRLMLEQGLIRQAGNGTFYLMPLLQRSLQKAVDLVDHFMQRHASAQKLTLPILTAASL 71

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLK 138
           W +SGR +S G E++R  DR+ K  I GPTHEE +T +  S    SYR  P   YQI  K
Sbjct: 72  WRQSGRLESAGPELMRTTDRHGKQQILGPTHEESITALVASISPVSYRAFPLRLYQISTK 131

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FRDE++PRFG+MR++EFLMKD Y+FD+    ++ +Y ++  +Y ++F  +G+  + +R +
Sbjct: 132 FRDEMKPRFGLMRAKEFLMKDLYTFDVGRGEARETYEEVNEAYRKLFDAVGVGYVKVRGD 191

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +G IGG  SHE+   ++ GE Q+ C  +                                
Sbjct: 192 TGTIGGSESHEYHFPSEVGEDQLVCCGECGMGWNQEM----------------------- 228

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                     +           GIEV H F    KYS  M A F   +GK   +QMG YG
Sbjct: 229 ------FGGCERCGGANVSRQAGIEVAHAFILDDKYSKTMGAKFLAQNGKPETLQMGCYG 282

Query: 319 IGAMRVVAAVIESSHDGKG 337
           IG  R++AA +E     KG
Sbjct: 283 IGVTRLLAAGVEVLSGEKG 301


>gi|296394216|ref|YP_003659100.1| threonyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181363|gb|ADG98269.1| threonyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 683

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 138/447 (30%), Gaps = 51/447 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   I +   RD      +L L +    +   G+  + P G      +    R +  
Sbjct: 248 LERHLALIAEAERRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGVLRKELEDYSRAKHI 306

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTH 110
             G   ++ P +  + L+  SG  D Y   M      +++                 P +
Sbjct: 307 EAGYEFVNTPHITKSHLYEVSGHLDWYADGMFPPMHVDEELHEDGSVRKPGQDYYLKPMN 366

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEG 169
             +   IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +  T   
Sbjct: 367 CPMHNLIFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIY-CTRAQ 425

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFM 228
            K   +      L +    GL    +   +        + E    A    ++V  +    
Sbjct: 426 MKDELSTTLQFVLDLLRDYGLDDFYLELSTKDEQKFVGADEIWAEATRTLSEVAEASGLT 485

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P P                       A      + +  D+L    ++S   ++    F
Sbjct: 486 LVPDPG--------------------GAAFYGPKISVQAKDALGRTWQMSTIQLD----F 521

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               ++       + G  G K+  V +     G++     V+   + G   +W   +AP 
Sbjct: 522 NLPERF----DLEYTGPSGHKERPVMIHRALFGSIERFIGVLVEHYAGAFPMW---LAPV 574

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++  I +    +       +    L   G     D   +++  +         P  V+ G
Sbjct: 575 QVMGIPV---SEDHVPHLREFVDSLRAGGVRAHIDSSDDRMQKKIFTHTAQKIPFLVLAG 631

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEV 434
            + V    V  + R    R  + + E 
Sbjct: 632 GRDVEAQTVSFRFRDGSQRNAVPVAEA 658


>gi|50420561|ref|XP_458817.1| DEHA2D08206p [Debaryomyces hansenii CBS767]
 gi|49654484|emb|CAG86963.1| DEHA2D08206p [Debaryomyces hansenii]
          Length = 474

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/460 (15%), Positives = 148/460 (32%), Gaps = 67/460 (14%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              +  I++ +L+  T      + G   +LP G +  + +   ++ +Q + G  E+  P 
Sbjct: 39  TQANHAISNKQLLYTTD---SLTPGSIFFLPHGTRIFNKLVHFMKNQQLKYGFQEVITPL 95

Query: 74  LQSADLWVESGRYDSYGKEMLRL-------------ADRND-----KAMIYGPTHEEVMT 115
           +    LW  SG +++Y ++M ++                +D           P +     
Sbjct: 96  IYKTKLWEMSGHWENYKEDMFKVVGNDLSKEEDISHEHNHDDSEGLHDYGLKPMNCPGHC 155

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            IF    +SY  LP  +       R+E      G+ R R F   D + F       +   
Sbjct: 156 LIFSKFERSYNELPIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCELY-QIQDEI 214

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                     +   G+ S+               +      T  T  F           S
Sbjct: 215 TNTINLIKDTYKVFGIDSVK--------------DVEFFLSTRPTDKFMGDITTWNDAES 260

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           + T+  D  +            A      +  L D+  +  +V    ++    F   +++
Sbjct: 261 QLTNVLDNTAGRGNWSIREGDGAFYGPKIDILLKDAFDKKHQVGTIQLD----FQLPSRF 316

Query: 295 SLPMSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                  +   DG      + +     G++    A++   + GK   WP  + P +  +I
Sbjct: 317 ----KLNYISKDGNRDNQPIMIHRAVFGSLERFFAILLDHYQGK---WPFWINPRQAVII 369

Query: 353 NIKAHDQVCRDACEKIYARL--------------SKVGCDVFWDDMGEQIGSQFAVADLL 398
            +        DA   +  +L              +     V  D   E +G++   A   
Sbjct: 370 PVN---DTHHDAAVALQKKLVGDIMDDTVEVSPMTGYNFYVDVDSRSETVGNRIKDATQK 426

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G+   +++G K + +  V I+ R      +++ EE+    
Sbjct: 427 GYSYILMLGDKDLQNGTVAIRSRDDRKISNLTPEEIYQKF 466


>gi|223984654|ref|ZP_03634777.1| hypothetical protein HOLDEFILI_02073 [Holdemania filiformis DSM
           12042]
 gi|223963395|gb|EEF67784.1| hypothetical protein HOLDEFILI_02073 [Holdemania filiformis DSM
           12042]
          Length = 566

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/227 (42%), Positives = 141/227 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+EN +D +  S  L++R GMI + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MRLSQSFFTTLRENVKDEDSVSGNLLVRAGMIKKSSAGVYMYLPLGYKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G+ E+ +P L   +++V SGR D++G  M  L DR +K+ + GPTHEE+       
Sbjct: 61  MDQAGSQELLMPALIPEEVYVASGRRDNFGSSMFSLKDRFNKSYVLGPTHEELFAVAAGM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF  YQ Q K+RDE RPR+G++R REF+MKDAYSFD    G   +Y KMF +
Sbjct: 121 KIRSYKDMPFNLYQFQTKYRDEARPRYGLIRVREFIMKDAYSFDKDEAGMDVAYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y R F R+ +    +RA++G +GG LS EF  + + GE  +      
Sbjct: 181 YKRAFDRMHMDYKIVRADTGVMGGLLSEEFQAVTEIGEDVLVLCDQC 227



 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 1/201 (0%)

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              ++   E + A Y A      E     +   K V  +GIE+G+ F  GTKY+  M   
Sbjct: 363 YHYIHVNQEDFKADYTADVRQIMEGDTCPICGGKIVFKKGIEIGNTFKLGTKYAQAMDLE 422

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   + K + V MGSYGIG  R +AA+ E   D  G+ WP ++AP+ ++++ I   D+  
Sbjct: 423 YLDQENKLNPVWMGSYGIGIGRCMAALAEQHSDEHGLCWPINIAPYPVAIVVIAKKDEQQ 482

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             A E++YA+L   G DV  DD  E+ G +F   DL+G P+++ VG K + D  VE+K R
Sbjct: 483 MAAAEQLYAQLQAAGVDVMLDDRDERPGVKFKDMDLIGTPIRLTVGKK-IGDGLVEMKLR 541

Query: 422 LTGIREDMSLEEVINYASHRF 442
                ED+S++ V+       
Sbjct: 542 KAEKAEDISIDNVVAKVLELI 562


>gi|148381286|ref|YP_001255827.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932635|ref|YP_001385663.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153936422|ref|YP_001389069.1| prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|171769224|sp|A7FYU0|SYP_CLOB1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172047866|sp|A5I768|SYP_CLOBH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148290770|emb|CAL84901.1| prolyl-tRNA synthetase 1 [Clostridium botulinum A str. ATCC 3502]
 gi|152928679|gb|ABS34179.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152932336|gb|ABS37835.1| proline--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 478

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 154/445 (34%), Gaps = 77/445 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +    +I           P G    +N+   +  +  
Sbjct: 14  MDEDFAQWYTDIVKKAELADYSSIRGCMIIR----------PNGYGIWENIQKYVDTKLK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   +S+P     +L   E    + +  E+  +    D  +       PT E +  + 
Sbjct: 64  EYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWVTHGGDDELAERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E +     +R+ EFL ++ ++   T E +       
Sbjct: 124 YAKIVQSYKDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETKEEA----ESH 178

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +  L ++ R                                   C        +  + T
Sbjct: 179 SLKILNMYSR----------------------------------LCEDMLAMPVVMGKKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +     +      +                          + ++ G   Y G  +S  
Sbjct: 205 DKEKFAGADDTYTIESL---------------------MHDGKALQAGTSHYLGQNFSKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  F   +GK  Y    ++ +   R++ A+I    D  G+  P  +AP +  +I +  H
Sbjct: 244 FAIQFSDRNGKLDYPHYTTWAVT-TRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +++  +L+KV   V  DD  +  G +++  ++ G PL++ +G K +  ++  
Sbjct: 303 KEGVLEKAKELKEKLAKV-VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +  R    +  +SL+E+        
Sbjct: 362 LVRRDNREKTIVSLDEIEIKVQEML 386


>gi|85057755|ref|YP_456671.1| prolyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|114152170|sp|Q2NJ01|SYP_AYWBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84789860|gb|ABC65592.1| prolyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 474

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 160/423 (37%), Gaps = 68/423 (16%)

Query: 27  LRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
           L+  +I +  +KG   +LP G    +N+   +     +TG   +  P +    L+  E  
Sbjct: 26  LKAELIAYSEAKGFIIYLPYGYALWENIQKHLNCTLQKTGHQNVYFPLVFPEKLFHKEKE 85

Query: 85  RYDSYGKE--MLRLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
               +  E  M+    + +  + ++  PT E + +  +   I SYR+LP  + Q     R
Sbjct: 86  HIQGFSPEAAMITTTGKKNLSEKLVIRPTSEILFSQYYSKTITSYRDLPKLYNQWCNVVR 145

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +     +R +EFL ++ ++   T + +        +S L I+ +L            
Sbjct: 146 WE-KTTKPFLRGKEFLWQEGHTVHATEQEAMQQT----LSILDIYQKL------------ 188

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             G DL     V     ET+ F                                      
Sbjct: 189 --GKDLLALPFVCGKKTETEKFAGALITYSIEA--------------------------- 219

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                              + ++ G   Y G  ++      F+  D +  Y    S+G+ 
Sbjct: 220 --------------LMHDGQALQAGTSHYLGIIFAKSFQIQFQDCDNQKKYAHQTSWGV- 264

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R++ A+I    D +G++ P  VAP +I +I ++  D+  +   E +++ L K    V 
Sbjct: 265 STRLIGALIMVHSDDEGLVLPPYVAPMQIVIIPLQTQDESVKQVSENLFSILQK-NYRVH 323

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D   +  G +F+  +L G PL++ +G + + + +V I  R    ++++ +++  +    
Sbjct: 324 LDLQDKTAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKIKDFPSQIPQ 383

Query: 441 RFS 443
            F 
Sbjct: 384 LFE 386


>gi|163938386|ref|YP_001643270.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163860583|gb|ABY41642.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 476

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 158/453 (34%), Gaps = 77/453 (16%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             +G   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 61  KESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLVERLCIRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E +     +R+ EFL ++ +    T   +      
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGH----TIHETAEESQI 175

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++ L ++                                    FC +      I  + 
Sbjct: 176 ETLNILNLY----------------------------------AAFCEEYLAIPVIKGQK 201

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T+ +      +     +                          + ++ G    FGT +S 
Sbjct: 202 TEKEKFAGAKATYTIESL---------------------MHDGKALQTGTSHNFGTNFSE 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 241 AFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQ 299

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 300 HKEGVLEKATELQGRIQKV-ARVKIDVSNKTPGWKFNEYEMKGVPIRLEVGPKDIEKNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R T  +E +S++++              L
Sbjct: 359 VLVRRDTKEKEFISMDQLEERIPVLLEEIHHSL 391


>gi|168178993|ref|ZP_02613657.1| prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226950778|ref|YP_002805869.1| prolyl-tRNA synthetase [Clostridium botulinum A2 str. Kyoto]
 gi|259511586|sp|C1FM10|SYP_CLOBJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182670280|gb|EDT82256.1| prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226841931|gb|ACO84597.1| proline--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 478

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 154/445 (34%), Gaps = 77/445 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +    +I           P G    +N+   +  +  
Sbjct: 14  MDEDFAQWYTDIVKKAELADYSSIRGCMIIR----------PNGYAIWENIQKYVDTKLK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   +S+P     +L   E    + +  E+  +    D  +       PT E +  + 
Sbjct: 64  EYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWVTHGGDDELAERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E +     +R+ EFL ++ ++   T E +       
Sbjct: 124 YAKIVQSYKDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETKEEA----ESH 178

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +  L ++ R                                   C        +  + T
Sbjct: 179 SLKILNMYSR----------------------------------LCEDMLAMPVVMGKKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +     +      +                          + ++ G   Y G  +S  
Sbjct: 205 DKEKFAGADDTYTIESL---------------------MHDGKALQAGTSHYLGQNFSKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  F   +GK  Y    ++ +   R++ A+I    D  G+  P  +AP +  +I +  H
Sbjct: 244 FAIQFSDRNGKLDYPHYTTWAVT-TRLIGAIIMVHGDNSGLKLPPRIAPTQAVIIPVAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +++  +L+KV   V  DD  +  G +++  ++ G PL++ +G K +  ++  
Sbjct: 303 KEGVLEKAKELKEKLAKV-VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +  R    +  +SL+E+        
Sbjct: 362 LVRRDNREKTIVSLDEIEIKVQEML 386


>gi|47220882|emb|CAG03089.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1638

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 146/443 (32%), Gaps = 49/443 (11%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
            +++ +  MI  +   G Y   P      + +      E  + G      P   S A L  
Sbjct: 1128 QVITKAEMIEYYDVSGCYVLRPWSYSIWEAIKDFFDAEIRKLGVENCYFPMFVSQAALEK 1187

Query: 82   ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E    + +  E+  +         + +   PT E VM   +   ++S+R+LP    Q   
Sbjct: 1188 EKTHIEDFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIKLNQWCN 1247

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++   T E +     ++   Y R++    L +IP+  
Sbjct: 1248 VVRWEFKHPQPFLRTREFLWQEGHTAFATKEEAAEEVLQILDLYARVYEE--LMAIPVVK 1305

Query: 198  ESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G     E     D   T + F S       +P          +   +     A  
Sbjct: 1306 -----GRKTEKEKFAGGDYTTTVEAFISASGRAIQVPGA----PPSGAPEGLWWGAAADE 1356

Query: 257  AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQM 314
            A                         +     + G  +S      F+     G+      
Sbjct: 1357 APALCP--------------------QGATSHHLGQNFSKMFEIVFEDPKKPGEKQLAFQ 1396

Query: 315  GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEK 367
             S+GI   R +  +     D KG++ P  VA  ++ +I         +A  Q     C K
Sbjct: 1397 NSWGIT-TRTIGVLTMVHGDNKGLVLPPRVACLQVVIIPCGITASLPEADRQALLAQCAK 1455

Query: 368  IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                L + G  V  D       G +F   +L G P+++ VG K +   +     R TG +
Sbjct: 1456 YQDHLQRAGVRVKSDLRDNYSPGWKFNHWELKGVPVRLEVGPKDLQQRQCVAVRRDTGAK 1515

Query: 427  EDMSLEEVINYASHRFSNNRPVL 449
              +   EV         + +  L
Sbjct: 1516 LTVPEAEVEKQLRVLLEDIQSCL 1538


>gi|189499811|ref|YP_001959281.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|259511582|sp|B3EP23|SYP_CHLPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189495252|gb|ACE03800.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 481

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 160/437 (36%), Gaps = 82/437 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +    +I           P G    + + A +      
Sbjct: 13  SQWYIDLV----RSAKLADYSDVRGCMVIR----------PNGYAIWEKMQAALDGMFKA 58

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P       +  E+   + +  E   +     + +       PT E V+   +
Sbjct: 59  TGHVNAYFPLFIPESYIQKEADHIEGFAPECAVVTHGGGEELAEKLYVRPTSETVIWASY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TPE ++    +M 
Sbjct: 119 KKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTSEFLWQEGHTAHATPEEAQDEVLRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++     + + M      IG     E    AD                       
Sbjct: 178 ----NVYKTFAEEYMAMPV---LIGRKTDSEKFAGADET--------------------- 209

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                             E      + ++ G     G  ++   
Sbjct: 210 -------------------------------WCIEAMMQDKKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  +G   YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ ++ I   D
Sbjct: 239 DCQFQSKNGTLEYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLASRQVVIVPILRGD 297

Query: 359 -QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            Q   +    +   L+  G   F DD  +   G +FA  +L G P+++ +G + +S +  
Sbjct: 298 KQAVAEKAHALADELNSNGIHAFVDDSEQNSPGWKFAEYELQGIPVRLEIGPRDISSNIC 357

Query: 417 EIKHRLTGIREDMSLEE 433
               R TG ++ ++L++
Sbjct: 358 IAARRDTGEKQQIALDD 374


>gi|313203193|ref|YP_004041850.1| prolyL-tRNA synthetase [Paludibacter propionicigenes WB4]
 gi|312442509|gb|ADQ78865.1| prolyl-tRNA synthetase [Paludibacter propionicigenes WB4]
          Length = 490

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 165/443 (37%), Gaps = 85/443 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +    + +G     P G    + + A +      TG +    P          E
Sbjct: 19  LVIKADLAESSAVRGCMVIKPYGYAIWEKIQAELDRMFKETGHVNAYFPLFIPKSFLSKE 78

Query: 83  SGRYDSYGKEMLRLADRN------------------DKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                      ++ +I  PT E ++ + ++  I+S
Sbjct: 79  AEHVEGFAKECAVVTHHRLMADPNGKGLIVDPDAKLEEELIVRPTSETIIWNTYKGWIQS 138

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E+R R   +R+ EFL ++ ++   T   +     K     L +
Sbjct: 139 YRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATEAEAVTEARK----MLEV 193

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +                            AD  E         +   + S N  F   + 
Sbjct: 194 Y----------------------------ADFAER---FMAVPVLKGVKSANERFAGALD 222

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I                               + ++ G   + G  ++     TF  
Sbjct: 223 TYCIEAL------------------------MQDGKALQAGTSHFLGQNFAKAFDVTFMD 258

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VC 361
              K  YV   S+G+ + R++ A+I +  D  G++ P ++APF++ ++ I  +++     
Sbjct: 259 KSNKLDYVWATSWGV-STRLMGALIMTHSDDNGLVLPPNLAPFQVVIVPIYKNEEQLAAI 317

Query: 362 RDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               +++  +L  +G  V +D+   ++ G +FA  +L G P+++ +G++ + +  VE+  
Sbjct: 318 DAKVDEMIPKLKALGISVKYDNNDNKKPGWKFAEYELKGVPVRLALGARDLENGTVEVAR 377

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E +++E V NY S    
Sbjct: 378 RDTLTKETVAIEGVENYISDLLK 400


>gi|297564570|ref|YP_003683542.1| prolyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849019|gb|ADH62034.1| prolyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 477

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 155/455 (34%), Gaps = 80/455 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     E    A++  +  +  T +I           P G    + +   +     
Sbjct: 10  QSEDFNEWYNEVVLKADLVDYGPVRGTMVIK----------PYGYALWEGLQRELDRRFK 59

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E+   + +  E+  +     +  ++ +   PT E ++  +
Sbjct: 60  ETGHHNAYFPLFIPMSFFQKEAEHVEGFAPELAVVTHAGGEELEEPLAVRPTSETIIGHM 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + S IKSYR+LP    Q     R ELR +   +R+ EFL ++ ++   T E ++    +M
Sbjct: 120 WASWIKSYRDLPQLLNQWNSVVRWELRTKL-FLRTSEFLWQEGHTAHATQEEAEEETRRM 178

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y  +            A  G  G     E    A+   T                  
Sbjct: 179 LDIYATVLRE-------YAAVPGWEGRKTESEKFAGAEYTLT------------------ 213

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                                              E      + ++     YFG K+S  
Sbjct: 214 ----------------------------------YEAMMRDGKALQSCTSHYFGQKFSRA 239

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  D +  Y    S+G  + R + A++ +  D KG+I P  +AP ++ ++ I   
Sbjct: 240 FEIKFQDKDLQTKYAYTTSWGF-STRAIGAIVMTHGDDKGLILPPKLAPIQVVVVPIYKE 298

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           D       A E +   L   G  V  DD  +   G +F   +L G P ++ +G + V   
Sbjct: 299 DTRAKVLAAAEGLAQALKAAGIRVHLDDRDQYSPGFKFNEWELKGVPFRLELGPRDVDAQ 358

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +  RL G +E + +EE+    +         L
Sbjct: 359 TAVLASRLGG-KETVPMEEIAPTLADSLEAFHQAL 392


>gi|229817631|ref|ZP_04447913.1| hypothetical protein BIFANG_02901 [Bifidobacterium angulatum DSM
           20098]
 gi|229785420|gb|EEP21534.1| hypothetical protein BIFANG_02901 [Bifidobacterium angulatum DSM
           20098]
          Length = 677

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 146/446 (32%), Gaps = 52/446 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDSMYPPMRLDEEKDENGNVTKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELKNLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVAKDS---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                              +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------GLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++ L     +  ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERFQL----EYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +           +K  A L +       D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA---DEFAPHLQKFIASLEEETVRCEIDLSDDRFGKKIRNASKSKAPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEV 434
           + ++++ V  + R       + ++E 
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDEA 651


>gi|282881336|ref|ZP_06290016.1| proline--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281304812|gb|EFA96892.1| proline--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 493

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 174/464 (37%), Gaps = 88/464 (18%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + +E  S     L+++  +  Q + +G     P G    + +   + +    TGA
Sbjct: 5   LKELTKRSENYSQWYNDLVIKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGA 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEM-----LRLADRND-------------KAMIYG 107
                P L        E+     + KE       RL    +             + +I  
Sbjct: 65  QNAYFPLLIPKSFLSKEAEHVKGFAKECAVVTHYRLKSSEEGTGVEVDPAAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ IKS+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIKSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATR 183

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++    KM               + + A+                       F  +  
Sbjct: 184 EEAEAEAQKM---------------LKVYAD-----------------------FAEQWM 205

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               +    ++ +                                       + ++ G  
Sbjct: 206 AVPVVQGVKSETERFAGALDTYTIEAM---------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     T+   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTYLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQ 403
           ++ ++ I    +  +   +++      L  +G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVVIVPISKTSEQLKAIHDQLKPIIDGLRAMGITVKFDDNDTKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +++G + + ++ +E+  R T  +E +SLE+++ Y        + 
Sbjct: 364 LVMGGRDLENNTIEVMRRDTLQKETVSLEKILEYVPKLLEEMQA 407


>gi|33861065|ref|NP_892626.1| prolyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|81835597|sp|Q7V2H0|SYP_PROMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33639797|emb|CAE18967.1| Prolyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 600

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/229 (43%), Positives = 141/229 (61%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++ II +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKGGYIRRVNSGIYAYMPIMLRVIEKISTIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N     ++ +P L  A+LW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNNIYCSKLLLPQLHPAELWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E     Y K
Sbjct: 121 IASEMINSYKQLPLCFYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHSSKEDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           M  +Y  IF   GL ++ + A+SG IGG  S EF+V AD GE  +  ++
Sbjct: 181 MEKAYENIFKNCGLDTVGVDADSGAIGGAASKEFMVTADAGEDSILFTE 229



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 7/247 (2%)

Query: 200 GPIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           G IG D++ E I +  + +        + +     F       DF  +        +   
Sbjct: 347 GFIGPDINDETIKINSSWDKSWIRIADYSASSLSIFVSGGNKVDFHKVF-RAFSFIEKKF 405

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             +   +             +    RGIE+GHIF  G KYS  ++A F   +G+   + M
Sbjct: 406 LISDIRNAKKGDCISQESNEELKEKRGIEIGHIFQLGQKYSEKLNAKFSDKNGQLKNLWM 465

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R+  A IE +HD  GI WP  ++PF+I +I     D + ++  ++IY     
Sbjct: 466 GCYGIGVTRIAQAAIEQNHDENGISWPIQISPFEILIIPTNLKDPIQKELTQEIYEEFIS 525

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              DV  DD  ++ G +F  ADL+G P Q+I+G +   + +VE   R +  +  ++ + +
Sbjct: 526 NQIDVLLDDRDDRAGVKFKDADLIGIPFQIIIG-RDSINKEVEFFSRSSKSKIKIASKNL 584

Query: 435 INYASHR 441
           +      
Sbjct: 585 LEKFISE 591


>gi|302783999|ref|XP_002973772.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
 gi|300158810|gb|EFJ25432.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
          Length = 795

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 135/430 (31%), Gaps = 70/430 (16%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   Q    +A+   H+ +   L    I +    G+  W P G      +    ++   R
Sbjct: 245 LKAYQTQKEEAKRRDHRRLGQDLELFSIQEDAGGGLVFWHPKGALIRHLIEDYWKKVHLR 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  A+LW  SG  D Y + M       ++     P +      I++  ++
Sbjct: 305 RGYELLYTPHVAKAELWKTSGHLDFYKENMFEQIKIEEEFYQLRPMNCPFHIQIYKDRVR 364

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP  F ++                                E  +     +      
Sbjct: 365 SYRELPIKFAEL--------------------------------EQIRGEIKSVLDLTEE 392

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I  + G ++  +   + P     S +    A          K +                
Sbjct: 393 ILSQFGFQNYEINLSTKPEKAVGSDDIWHKATEALKDAISDKGWTYGIDEGGG------- 445

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++      F   Y  P  A   
Sbjct: 446 -------------AFYGPKIDLKIEDAIGRTWQCSTIQVDFNLPERFDLTYVDPSQA--- 489

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     ++  S+ G   +W   +AP +  L+ +   +     
Sbjct: 490 ----RKQPIMIHRAIFGSIERFVGILIESYAGDFPLW---IAPVQARLLPVTDTE---LP 539

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C+++ ARL +          GE++      A++   PL  +VG K V    + ++ R  
Sbjct: 540 YCKQVLARLREKDIRAEI-ACGERLSKLIRNAEVQKIPLMAVVGPKEVEAQTLTVRTRHG 598

Query: 424 GIREDMSLEE 433
           G    +S++E
Sbjct: 599 GELGTLSVDE 608


>gi|25028341|ref|NP_738395.1| threonyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|23493626|dbj|BAC18595.1| putative threonyl-tRNA synthetase [Corynebacterium efficiens
           YS-314]
          Length = 720

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 146/464 (31%), Gaps = 54/464 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   RD      +L L +    +   G+  + P G      +    R   
Sbjct: 284 KLDEYQTMLAEAEKRDHRRLGTELDLFS-FPDEIGSGLPVFHPNGAIVRLEMEEHSRRRH 342

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------ADRNDKAMIYGPT 109
            + G   ++ P    +DL+ +SG    Y + M                 +  +     P 
Sbjct: 343 IQAGYSFVNTPHATKSDLFEKSGHLGFYKEGMFPPLQLDAEYDAEGNQTKPGQDYYLKPM 402

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +
Sbjct: 403 NCPMHNLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTED 461

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +     +    + +    GL    +   +  P       E    +     +V  +   
Sbjct: 462 QLEEELTSVLEFIISLLKDYGLDDFYLELSTKDPKKFVGDDEIWERSTEILQRVATNSGL 521

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P P                       A      + +  D++    ++S   ++    
Sbjct: 522 DLVPDPE--------------------GAAFYGPKISVQAKDAIGRTWQMSTVQLD---- 557

Query: 288 FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +   DG K   + +     G++     V+   + G    W   +AP
Sbjct: 558 FNLPERF----ELEYTSPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAP 610

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++  I +    +      EK+  +L   G     D   +++  +         P  ++ 
Sbjct: 611 HQVVGIPVA---EDFIPHLEKVVDKLRARGFRAEVDTSDDRMQKKIRTHTTGKIPFMLLA 667

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF---SNNRP 447
           G + V    V  +         + ++E +   S      +N +P
Sbjct: 668 GGRDVEADAVSFRFLDGTQVNGVPVDEAVELISTWILERNNTQP 711


>gi|126695873|ref|YP_001090759.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166980139|sp|A3PBN3|SYP_PROM0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126542916|gb|ABO17158.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 600

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/229 (44%), Positives = 142/229 (62%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++PL  + ++ ++AII +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVNSGIYAYMPLMLRVVEKISAIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  +       Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSENDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++
Sbjct: 181 VGNAYENIFESCGLQTVGVDADSGAIGGASSKEFMVTADAGEDSILFTQ 229



 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 108/255 (42%), Gaps = 7/255 (2%)

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            L L  I    ++  I    + E           +  S   +   I   N      +   
Sbjct: 343 DLPLGFIGPDLDNKTIKASSNWE-----KKWTRIIDHSASDLSKFISGGNKVNFHKVFQE 397

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                         +           + +    +GIE+GHIF  G KYS  ++A F   D
Sbjct: 398 FSFNSKNYLIGDIRNAKKGDKISIDDDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKD 457

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+   + MG YGIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  D  E
Sbjct: 458 GQLKNLWMGCYGIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDPIQSDLTE 517

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY        DV  DD  ++ G +F  A+L+G P QVI+G +   + +VE+  R    +
Sbjct: 518 QIYNNFLINKIDVLLDDRNDRAGVKFKDAELIGIPFQVIIG-RDSINKEVELFCRTNNTK 576

Query: 427 EDMSLEEVIN-YASH 440
             +S ++++  + S 
Sbjct: 577 IKISTDKLLETFISE 591


>gi|289425232|ref|ZP_06427009.1| threonine--tRNA ligase [Propionibacterium acnes SK187]
 gi|289154210|gb|EFD02898.1| threonine--tRNA ligase [Propionibacterium acnes SK187]
          Length = 684

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 151/461 (32%), Gaps = 45/461 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 237 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 296

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 297 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 356

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 357 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 415

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 416 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 463

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 464 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 521

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               F  +Y+   S            + + S  +G++     V+   + G   +W   ++
Sbjct: 522 QPERFDLEYAAADSTH-------QRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---LS 571

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +I
Sbjct: 572 PVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILI 628

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            G +      V  + R       + L+E +   +   S +R
Sbjct: 629 AGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 669


>gi|313792096|gb|EFS40197.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801952|gb|EFS43186.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313812897|gb|EFS50611.1| threonyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
 gi|313838778|gb|EFS76492.1| threonyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314962753|gb|EFT06853.1| threonyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315077970|gb|EFT50021.1| threonyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327453186|gb|EGE99840.1| threonyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 689

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 151/461 (32%), Gaps = 45/461 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               F  +Y+   S            + + S  +G++     V+   + G   +W   ++
Sbjct: 527 QPERFDLEYAAADSTH-------QRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---LS 576

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +I
Sbjct: 577 PVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILI 633

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            G +      V  + R       + L+E +   +   S +R
Sbjct: 634 AGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 674


>gi|319940262|ref|ZP_08014614.1| prolyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319810564|gb|EFW06900.1| prolyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 619

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++ V  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQISAGVYSYLPLANRVIEKVKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRYD+YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYDTYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R  +    +  + G +GG  S EF+ +  
Sbjct: 181 YENIFTRSEVDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 16/229 (6%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVAGANEDGYHLTGVNPGRDFTAEYVDIREVREREVSPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+AT    +G+   V MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSESMNATVLDENGRAVPVVMGCYGIGVSRLLSAVMEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      E++ A L K G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEALALTEQLEAELLKAGYEVLTDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G P++V +G K  +D  VE+K + TG   ++ ++ ++   +     ++
Sbjct: 572 IGLPIRVTIGKK-AADRIVEVKIKATGDTIEVHVDNLLETLAILTKEDK 619


>gi|325336816|gb|ADZ13090.1| Threonyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 591

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 142/394 (36%), Gaps = 41/394 (10%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E  R D      +L L T    +   G+  WLP G      + + + E Q +
Sbjct: 227 KEYLERLEEAKRRDHRKLGKELGLFT-FSEKVGAGLPLWLPKGAALRKKLESFLSEAQRK 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P + + +L+  SG Y+ YG +  +        +  +  P +     +++++ 
Sbjct: 286 GGYEFVMTPHIGNIELYKTSGHYEKYGADSFQPIKTPHVGEEFLLKPMNCPHHCEVYKAQ 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+   
Sbjct: 346 QWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLF-CTPDQLLEEFEKVIDL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG +    +                  D      +   +       S      
Sbjct: 405 VLYVFKSLGFEDFIAQVSLR--------------DKENRAKYIGSEENWEKAESAIITAA 450

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
               LN++VE   A +                  K    R  ++G I      Y+LP   
Sbjct: 451 KNKGLNTVVEYGEAAFYGPKLDF---------MVKDALGRSWQLGTI---QVDYNLPERF 498

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+ G+D + H  + +     G+M    A++  +  G   +W   + P +  L+ I   
Sbjct: 499 DLTYVGSDNERHRPIMIHRAPFGSMERFIAILIENTAGDFPLW---LNPDQYILLPI--- 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            +   D  +K+   L         D+  E+ G +
Sbjct: 553 SEKYTDYAKKVSQLLENHDICGLVDERNEKTGKK 586


>gi|157412925|ref|YP_001483791.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166980140|sp|A8G3M4|SYP_PROM2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157387500|gb|ABV50205.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 600

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/229 (44%), Positives = 142/229 (62%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++AII  
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLQAGYIRRVNSGIYAYMPIMLRVIEKISAIIER 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWRKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  +K
Sbjct: 181 VGNAYENIFKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTK 229



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  G KYS  ++A F   DG    + MG YGIG  R+  A IE +HD KGI 
Sbjct: 431 KGIEIGHIFQLGQKYSEKLNAKFSDKDGTLKNLWMGCYGIGVTRIAQAAIEQNHDQKGIC 490

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  ++PF++ +I     D +  +  E+IY        DV  DD  ++ G +F  A+L+G
Sbjct: 491 WPIQISPFEVIIIPTNLKDPIQSELTEQIYNNFLINKIDVLLDDRNDRAGVKFKDAELIG 550

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN-YASH 440
            P Q+I+G +   + +VE+  R    +  +S ++++  + S 
Sbjct: 551 IPFQIIIG-RDSVNKEVELLSRTNNTKFKISTDKLLETFISE 591


>gi|291299271|ref|YP_003510549.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290568491|gb|ADD41456.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 562

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/233 (43%), Positives = 139/233 (59%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L++ P +AE  SH+ ++R G I Q + G YS LPL  +    + A+IREE
Sbjct: 1   MRWSTLYAPTLRDFPAEAEAPSHQRLVRAGFIRQLAAGHYSLLPLAIRVRAKIMAVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E  +P +  A++W  SGR+D  G EM RL DR    +  G THEE+ T I  +
Sbjct: 61  LDRIGAQEFLLPAMHPAEIWHASGRWDVMGSEMFRLKDRKGAQLALGMTHEEIFTSI-AT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  +YQ Q KFRDE RP+ G++R REF MKD+YSFDL   G   +++K   +
Sbjct: 120 ELNSYKQLPQIWYQFQTKFRDEPRPKGGLLRVREFTMKDSYSFDLDAAGLDAAFDKHRGA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           YLRIF RLG+ +IP+ A SG +GG  S EF+  A +GE  V          + 
Sbjct: 180 YLRIFERLGIPAIPVDASSGTMGGSGSTEFMSPAPSGEDLVMRCGCGYAANVE 232



 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 4/188 (2%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   +  ++ PE  +     R IEVGHIF  GTKYS  + A    A+GK   V MGS
Sbjct: 377 WLDLRRAQPGEACPECGQPLEEVRTIEVGHIFKLGTKYSEVLDAKVLDANGKAVPVVMGS 436

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA++E+ HD  GI WP +VAP+ ++++ +   D   R A E +Y +LS   
Sbjct: 437 YGIGVERAIAAIVEAHHDEAGIKWPVNVAPYTVAVVMMSTKDDEVRQAAENLYRQLSDT- 495

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD   + G++    +L+G P +V VG++ +    VEI  R TG  E + + E   
Sbjct: 496 -DVILDDRDARPGAKLTDVELVGIPFRVTVGARGLKTGSVEITSRATGETETVPVAEAAA 554

Query: 437 YASHRFSN 444
                  N
Sbjct: 555 RVRDLLKN 562


>gi|256269239|gb|EEU04564.1| YHR020W-like protein [Saccharomyces cerevisiae JAY291]
          Length = 688

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 158/441 (35%), Gaps = 76/441 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      +N+     ++    G      P  + S  L 
Sbjct: 200 QQILTKGEMLDYYDVSGCYILRPPSYTIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLE 259

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   ++SYR+LP    Q  
Sbjct: 260 KEKDHVEGFAPEVAWVTRAGSSELEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWN 319

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT + ++    ++   Y  ++    L ++P+ 
Sbjct: 320 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTAKDAEEEVLQILDFYAGVYEE--LLAVPV- 376

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F               DF                 
Sbjct: 377 ---------------VKGRKTEKEKFAG------------GDFTTTCEGYIPQ------- 402

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--- 313
                                + RGI+     + G  +S   + + +   G DH      
Sbjct: 403 ---------------------TGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAY 441

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACE 366
             S+G+ + RV+  ++    D KG++ P  V+ F+  +I +   K   +  R    +   
Sbjct: 442 QNSWGL-STRVIGVMVMIHSDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIQETAR 500

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            + +RL KVG   F D +     G +F+  +L G P+++ +G K +  ++V +  R    
Sbjct: 501 SVESRLKKVGIRAFGDYNDNYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSK 560

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +  +S +E+           +
Sbjct: 561 KYVVSFDELEARIPEILEEMQ 581


>gi|328947267|ref|YP_004364604.1| Prolyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447591|gb|AEB13307.1| Prolyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 603

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 152/282 (53%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+     L+++P +A I+SH+LM+R  +I +   G+Y+++P G +A   +  II+EE
Sbjct: 1   MKTSQIPFRTLRDSPSEAIISSHQLMMRADLIRKLGNGLYTYMPFGLRAYRKLEKIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              +GA+E     +   D+W ESGR+++ G +ML+  +R  + M+  PT EE  T I R 
Sbjct: 61  IEASGAMEFKPTVIVPGDIWKESGRWETMGPQMLKAQNRQQQDMVVSPTAEEAYTAIMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  K+RDE+RPR+GVMR REF M D Y+ +   E    SY     +
Sbjct: 121 GLTSYKQLPINCYQINTKYRDEIRPRYGVMRGREFNMMDGYTLNADDESLDQSYQAYAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF RLGL  I ++A++G +GG  S EF+V ++ G+  +   K      +   +   D
Sbjct: 181 YLRIFKRLGLDVITVKADTGAMGGSGSEEFMVESEIGDDTLILCKCGYAANVEKASCAKD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             + ++    + T          N    D L +  + S   +
Sbjct: 241 IPVDIDGNPVKATEKSYEPISTPNVGTIDDLEKYLKCSKHQL 282



 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 28/253 (11%)

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           + L ++P+ A++  +     H+F+V A+  +T     +   DF    +  D     + + 
Sbjct: 368 INLSNVPVIADNSVL---DMHDFLVGANKADTHFVHVEYGRDFSA-WKTADLRTAKAGDI 423

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                   Y                     + +G E+GHIF  G KY+  M+ T+   +G
Sbjct: 424 CPVCGKPFY---------------------TTKGNELGHIFKLGKKYTESMNVTYLDKNG 462

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K     MG YGIG  RV+A++IE+ HD +GIIWP S AP++++++ IK      ++A +K
Sbjct: 463 KSAVPTMGCYGIGVDRVLASIIEAFHDDRGIIWPMSTAPYQVAIVPIKY-SGAMKEAADK 521

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L K   +V  DD  E+ G +F   DL+GFP+++ VG K + +  VEIK R +   E
Sbjct: 522 IYDELLKASVEVLLDDRDERPGVKFNDMDLIGFPVRITVGDKNLPN--VEIKMRSSEQAE 579

Query: 428 DMSLEEVINYASH 440
            + LE     AS 
Sbjct: 580 LVPLENAAAKASE 592


>gi|210616985|ref|ZP_03291320.1| hypothetical protein CLONEX_03542 [Clostridium nexile DSM 1787]
 gi|210149508|gb|EEA80517.1| hypothetical protein CLONEX_03542 [Clostridium nexile DSM 1787]
          Length = 480

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 162/447 (36%), Gaps = 78/447 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R + F     +  R+AE+  +             KG  ++LP G    +N+   +     
Sbjct: 14  RDEDFAQWYTDVVREAELCDYS----------SVKGCLNYLPNGYAIWENIQRDLDARFK 63

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
            TG   +S+P L    L  + G   + +  E+  +     +R  + +   PT E +  D+
Sbjct: 64  ETGVENVSLPMLIPESLLEKEGDHIEGFAPEVAWVTHGGMERLQERLCIRPTSETLFCDL 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++S+R+LP  + Q     R E +     +RSREFL ++ ++   T E ++     M
Sbjct: 124 WSKMVRSHRDLPKVWNQWNSVLRWE-KTTRPFLRSREFLWQEGHTIHATYEEAEQRTLTM 182

Query: 178 FVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              Y       L +  +         G    +E    A   +T    +       + S  
Sbjct: 183 LKVYQDFIRDSLAIPFVS--------GRKAENEKFAGAQ--DTYTVEALMHDGKALQSAT 232

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           + F                                             G    F  KY  
Sbjct: 233 SHFFGN------------------------------------------GFPDAFNIKY-- 248

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                    + + H V   S+G+ + R++ A+I    D  G++ P  +AP +  +I I  
Sbjct: 249 ------IDKNNQPHSVYETSWGL-STRIIGAIIMVHGDDDGLVLPPRIAPVQTRVIPIAQ 301

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +  +++ A L   G     DD  +  G +F+  ++LG P ++ +G K +  ++V
Sbjct: 302 HKEGVLEKADELLAALKAAGYRAKIDDSEKSPGWKFSEQEILGIPTRIEIGPKDIEKNQV 361

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            +  R T  +  +S++E+         
Sbjct: 362 VVVRRDTREKIVVSIDEITTKLGEILE 388


>gi|15605873|ref|NP_213250.1| prolyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|81816424|sp|O66690|SYP_AQUAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2983039|gb|AAC06648.1| proline-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 570

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 112/268 (41%), Positives = 153/268 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL   +E P++AE  SH+L+L+ G I Q S GIY  LP   K L  V +IIR+E
Sbjct: 1   MRWSRYFLYTEKEEPKEAEAPSHRLLLKAGFIKQVSAGIYELLPPAYKVLKKVESIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW E+GR+++YG+E+ +L DRN +    GPTHEE +TD+ R 
Sbjct: 61  MDRSGAQELLLTVLNPKELWEETGRWETYGEELFKLKDRNGREYCLGPTHEEEITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ+KFRDE RPRFG++R+REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 VVRSYRQLPVILYQIQVKFRDEKRPRFGLIRAREFIMKDAYSFDTDDMSAMISYEAMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF++L L  I   A+ G IGG +SHEFI   D GE +V   ++              
Sbjct: 181 YQRIFNKLRLNVIMAEADVGQIGGKMSHEFIAFTDYGEAKVAYCENCGYAANAEIVPLPK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF 268
                                +     F
Sbjct: 241 PEEEKEEEKPMEKVHTPNVHTIEELSKF 268



 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 117/206 (56%), Gaps = 3/206 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
               ++       Y    DV   +  D  P+        RG+E+GHIF  GT+YS PM A
Sbjct: 365 WHYINVNPGRDFQYGEFVDVAEVREGDPCPKCGSPLKVRRGLELGHIFLLGTRYSEPMKA 424

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DGK+  + MG YGIG  R++AA++E  HD KGI WP  VAPF++ +I +   D+ 
Sbjct: 425 YFTDRDGKEKPIIMGCYGIGVSRILAALVEQYHDDKGIKWPTPVAPFELDIILLNTKDEE 484

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++  EK+Y    + G DV +DD  E  G +FA ADL+GFP +++VG K V + KVE++ 
Sbjct: 485 MKNVAEKLYLEAEEKGIDVIFDDREESPGFKFADADLVGFPYRIVVGKK-VKEGKVEVQS 543

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG + D+ +E+ I++   +   ++
Sbjct: 544 RHTGEKWDVEIEKAIDFVKEKIEEDK 569


>gi|282853974|ref|ZP_06263311.1| threonine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583427|gb|EFB88807.1| threonine--tRNA ligase [Propionibacterium acnes J139]
          Length = 684

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 237 ASREDLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 296

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 297 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVTRAGQEYYL 356

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 357 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 415

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 416 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKEEKFIGS 463

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 464 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 521

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 522 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 570

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 571 SPVQVRLVPVA---EAFNDYVTGFAEVLGSHGIRVETDLSSDRFGKKIRNASKDKVPFIL 627

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 628 IAGGEDAEAGAVSFRLRDGSQINGVVLDEAVRIITAWDSRHR 669


>gi|314981048|gb|EFT25142.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315091876|gb|EFT63852.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
          Length = 689

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREDLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKEEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSHGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQINGVVLDEAVRIITAWDSRHR 674


>gi|255009422|ref|ZP_05281548.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313147182|ref|ZP_07809375.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313135949|gb|EFR53309.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 497

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 174/449 (38%), Gaps = 85/449 (18%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  Q + +G     P G    + +   + +    TG +    P L        E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + +++ I+S
Sbjct: 82  AEHVEGFAKECAVVTHYRLKNAEDGSGVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q    FR E+R R   +R+ EFL ++ ++   T E ++    +M    L +
Sbjct: 142 YRDLPILCNQWANVFRWEMRTRL-FLRTAEFLWQEGHTAHATREEAEEEAIRM----LNV 196

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +                            AD  E         +   + S N  F   + 
Sbjct: 197 Y----------------------------ADFAEK---YMAVPVVKGVKSANERFAGALD 225

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +I                               + ++ G   + G  ++      F  
Sbjct: 226 TYTIEAM------------------------MQDGKALQSGTSHFLGQNFAKAFDVQFVN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +  
Sbjct: 262 KENKLEYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQI 320

Query: 365 ---CEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               E I A+L  +G  V +D+   ++ G +FA  +L G P+++++G + + ++ +E+  
Sbjct: 321 DAKVEGIVAKLKALGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R T  +E ++ + +  Y  +     +  +
Sbjct: 381 RDTLEKETVTCDGIETYVQNLLEEIQANI 409


>gi|164427281|ref|XP_964988.2| threonyl-tRNA synthetase, mitochondrial precursor [Neurospora
           crassa OR74A]
 gi|157071680|gb|EAA35752.2| threonyl-tRNA synthetase, mitochondrial precursor [Neurospora
           crassa OR74A]
          Length = 498

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 152/470 (32%), Gaps = 77/470 (16%)

Query: 21  ASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
             H+ +       M   +S G   +LP G +  + +   +R++    G  E+  PT+   
Sbjct: 54  PDHRDLGTQQELFMTSIYSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQEVITPTIYKK 113

Query: 78  DLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            LW +SG  ++Y  +M  +                      P +      IF +  +SYR
Sbjct: 114 ALWAKSGHLENYADDMFTVTSTSPSRADVTEAGEADEYGLKPMNCPGHCLIFAAQKRSYR 173

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  +       R+E+     G+ R R F   D + F   P   +   +K      R++
Sbjct: 174 DLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIF-CRPNQIEDEISKTLEFIRRVY 232

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               L S  ++  + P     S E    A+    +   +          +          
Sbjct: 233 KDFRLGSYRLKLSTRPENHIGSLEDWEHAEGSLKRALDNSGEPWTLNEGDG--------- 283

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA----- 300
                      A      +  L DS  +  + +   ++    F    ++ L   A     
Sbjct: 284 -----------AFYGPKIDVILKDSDGKEHQTATIQLD----FQLPKRFELEYQAPAPEL 328

Query: 301 -----TFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                T    +     G    V +    +G+   + A++   ++GK   WP  + P +  
Sbjct: 329 EAKGETTTDPELLAVSGPVRPVMIHRAVLGSAERMFALLIEHYNGK---WPFWLNPRQGI 385

Query: 351 LINIKAHDQVCRDACEKIYARLSK----------VGCDVFWDDMGEQIGSQFAVADLLGF 400
           ++ +    +            L             G  V  DD    +  +   A   G+
Sbjct: 386 VLTVN-DSEPVLQFARNTQKVLLGTDSADVHVSPSGLAVDLDDSARSLSLKIREAKTKGY 444

Query: 401 PLQVIVGSKFVSDSKVEI---KHRLTGIR-----EDMSLEEVINYASHRF 442
            + ++VG K +++  V +       TG +       M+ EE++ +   + 
Sbjct: 445 GMIIVVGPKDIANGTVTVDATGGLQTGDKPAQKNLVMTPEELLQFMKTKV 494


>gi|38567275|emb|CAE76565.1| related to threonine--tRNA ligase [Neurospora crassa]
          Length = 497

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 152/470 (32%), Gaps = 77/470 (16%)

Query: 21  ASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
             H+ +       M   +S G   +LP G +  + +   +R++    G  E+  PT+   
Sbjct: 53  PDHRDLGTQQELFMTSIYSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQEVITPTIYKK 112

Query: 78  DLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            LW +SG  ++Y  +M  +                      P +      IF +  +SYR
Sbjct: 113 ALWAKSGHLENYADDMFTVTSTSPSRADVTEAGEADEYGLKPMNCPGHCLIFAAQKRSYR 172

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  +       R+E+     G+ R R F   D + F   P   +   +K      R++
Sbjct: 173 DLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIF-CRPNQIEDEISKTLEFIRRVY 231

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               L S  ++  + P     S E    A+    +   +          +          
Sbjct: 232 KDFRLGSYRLKLSTRPENHIGSLEDWEHAEGSLKRALDNSGEPWTLNEGDG--------- 282

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA----- 300
                      A      +  L DS  +  + +   ++    F    ++ L   A     
Sbjct: 283 -----------AFYGPKIDVILKDSDGKEHQTATIQLD----FQLPKRFELEYQAPAPEL 327

Query: 301 -----TFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                T    +     G    V +    +G+   + A++   ++GK   WP  + P +  
Sbjct: 328 EAKGETTTDPELLAVSGPVRPVMIHRAVLGSAERMFALLIEHYNGK---WPFWLNPRQGI 384

Query: 351 LINIKAHDQVCRDACEKIYARLSK----------VGCDVFWDDMGEQIGSQFAVADLLGF 400
           ++ +    +            L             G  V  DD    +  +   A   G+
Sbjct: 385 VLTVN-DSEPVLQFARNTQKVLLGTDSADVHVSPSGLAVDLDDSARSLSLKIREAKTKGY 443

Query: 401 PLQVIVGSKFVSDSKVEI---KHRLTGIR-----EDMSLEEVINYASHRF 442
            + ++VG K +++  V +       TG +       M+ EE++ +   + 
Sbjct: 444 GMIIVVGPKDIANGTVTVDATGGLQTGDKPAQKNLVMTPEELLQFMKTKV 493


>gi|73919784|sp|Q8FPJ3|SYT_COREF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 694

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 146/464 (31%), Gaps = 54/464 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   RD      +L L +    +   G+  + P G      +    R   
Sbjct: 258 KLDEYQTMLAEAEKRDHRRLGTELDLFS-FPDEIGSGLPVFHPNGAIVRLEMEEHSRRRH 316

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------ADRNDKAMIYGPT 109
            + G   ++ P    +DL+ +SG    Y + M                 +  +     P 
Sbjct: 317 IQAGYSFVNTPHATKSDLFEKSGHLGFYKEGMFPPLQLDAEYDAEGNQTKPGQDYYLKPM 376

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +
Sbjct: 377 NCPMHNLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTED 435

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +     +    + +    GL    +   +  P       E    +     +V  +   
Sbjct: 436 QLEEELTSVLEFIISLLKDYGLDDFYLELSTKDPKKFVGDDEIWERSTEILQRVATNSGL 495

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P P                       A      + +  D++    ++S   ++    
Sbjct: 496 DLVPDPE--------------------GAAFYGPKISVQAKDAIGRTWQMSTVQLD---- 531

Query: 288 FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +   DG K   + +     G++     V+   + G    W   +AP
Sbjct: 532 FNLPERF----ELEYTSPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAP 584

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++  I +    +      EK+  +L   G     D   +++  +         P  ++ 
Sbjct: 585 HQVVGIPVA---EDFIPHLEKVVDKLRARGFRAEVDTSDDRMQKKIRTHTTGKIPFMLLA 641

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF---SNNRP 447
           G + V    V  +         + ++E +   S      +N +P
Sbjct: 642 GGRDVEADAVSFRFLDGTQVNGVPVDEAVELISTWILERNNTQP 685


>gi|306826599|ref|ZP_07459905.1| proline--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|304431207|gb|EFM34210.1| proline--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 618

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/215 (44%), Positives = 136/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E   DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMSSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL    +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIEVGHIF  
Sbjct: 394 AVAGANKDGFHVTGVNPGRDFQAEYVDIREVKEGEISPDGHGV--LQFARGIEVGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M AT    +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 452 GTRYSDSMGATILDENGRTVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQV +D   K+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 512 INFPKELAPFDVHLITVNVKDQVAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  ++  VEIK + TG   +++ E +I    
Sbjct: 572 IGLPIRVTVGKK-AAEGIVEIKIKATGDSIEVNAENLIETLE 612


>gi|151943962|gb|EDN62255.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190405804|gb|EDV09071.1| hypothetical protein SCRG_04726 [Saccharomyces cerevisiae RM11-1a]
 gi|207344767|gb|EDZ71797.1| YHR020Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259147048|emb|CAY80303.1| EC1118_1H21_0848p [Saccharomyces cerevisiae EC1118]
 gi|323308880|gb|EGA62116.1| YHR020W-like protein [Saccharomyces cerevisiae FostersO]
 gi|323348347|gb|EGA82595.1| YHR020W-like protein [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354780|gb|EGA86614.1| YHR020W-like protein [Saccharomyces cerevisiae VL3]
          Length = 688

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 158/441 (35%), Gaps = 76/441 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      +N+     ++    G      P  + S  L 
Sbjct: 200 QQILTKGEMLDYYDVSGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLE 259

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   ++SYR+LP    Q  
Sbjct: 260 KEKDHVEGFAPEVAWVTRAGSSELEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWN 319

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT + ++    ++   Y  ++    L ++P+ 
Sbjct: 320 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTAKDAEEEVLQILDFYAGVYEE--LLAVPV- 376

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F               DF                 
Sbjct: 377 ---------------VKGRKTEKEKFAG------------GDFTTTCEGYIPQ------- 402

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--- 313
                                + RGI+     + G  +S   + + +   G DH      
Sbjct: 403 ---------------------TGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAY 441

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACE 366
             S+G+ + RV+  ++    D KG++ P  V+ F+  +I +   K   +  R    +   
Sbjct: 442 QNSWGL-STRVIGVMVMIHSDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETAR 500

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            + +RL KVG   F D +     G +F+  +L G P+++ +G K +  ++V +  R    
Sbjct: 501 SVESRLKKVGIRAFGDYNDNYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSK 560

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +  +S +E+           +
Sbjct: 561 KYVVSFDELEARIPEILEEMQ 581


>gi|323333338|gb|EGA74735.1| YHR020W-like protein [Saccharomyces cerevisiae AWRI796]
          Length = 674

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 158/441 (35%), Gaps = 76/441 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      +N+     ++    G      P  + S  L 
Sbjct: 200 QQILTKGEMLDYYDVSGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLE 259

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   ++SYR+LP    Q  
Sbjct: 260 KEKDHVEGFAPEVAWVTRAGSSELEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWN 319

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT + ++    ++   Y  ++    L ++P+ 
Sbjct: 320 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTAKDAEEEVLQILDFYAGVYEE--LLAVPV- 376

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F               DF                 
Sbjct: 377 ---------------VKGRKTEKEKFAG------------GDFTTTCEGYIPQ------- 402

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--- 313
                                + RGI+     + G  +S   + + +   G DH      
Sbjct: 403 ---------------------TGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAY 441

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACE 366
             S+G+ + RV+  ++    D KG++ P  V+ F+  +I +   K   +  R    +   
Sbjct: 442 QNSWGL-STRVIGVMVMIHSDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETAR 500

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            + +RL KVG   F D +     G +F+  +L G P+++ +G K +  ++V +  R    
Sbjct: 501 SVESRLKKVGIRAFGDYNDNYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSK 560

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +  +S +E+           +
Sbjct: 561 KYVVSFDELEARIPEILEEMQ 581


>gi|325845496|ref|ZP_08168787.1| proline--tRNA ligase [Turicibacter sp. HGF1]
 gi|325488515|gb|EGC90933.1| proline--tRNA ligase [Turicibacter sp. HGF1]
          Length = 476

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 165/448 (36%), Gaps = 77/448 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + AE+  +             KG     P G    +N+   + ++   TG 
Sbjct: 16  FAQWYTDVVKKAELVDYS----------SVKGCMIIRPYGYAIWENIQQYLDQKFKETGH 65

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSH 121
             + +P L    L   E+   + +  E+  +    ++ +    +  PT E +  D +   
Sbjct: 66  ENVYMPMLIPESLLQKEADHVEGFAPEVAWVTHGGNEKLSERLVVRPTSETLFCDHYSKI 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SY +LP  + Q     R E +     +R+ EFL ++ ++   T E ++     M    
Sbjct: 126 IQSYNDLPKKYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTVHATAEEAEEETLLM---- 180

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L  + ++  + + +    G                 E + F                   
Sbjct: 181 LNTYAKMCEEFLAIPVLKG--------------QKTEKEKFAGA---------------- 210

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y   S +H+               + ++ G    FGT ++      
Sbjct: 211 -----------QATYTIESLMHD--------------GKALQSGTSHNFGTGFAKAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   + K  Y    S+G+   R++ A+I    D  G++ P  VAP ++ +I I AH +  
Sbjct: 246 YSDKNSKMQYAHQTSWGVT-TRLIGAIIMVHGDSSGLVLPPRVAPTQVMIIPIAAHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  RL+ V   V  D   +  G +F+  ++ G P++V +G K + +++  +  R
Sbjct: 305 IEKACELQTRLASV-ARVKCDTSDKTPGWKFSEYEMKGIPVRVEIGPKDIENNQAVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
            T  +  +SL+++         + +  L
Sbjct: 364 DTREKIIVSLDDLETKVVELLEDIQQSL 391


>gi|259507396|ref|ZP_05750296.1| threonine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|259165021|gb|EEW49575.1| threonine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 699

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 146/464 (31%), Gaps = 54/464 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   RD      +L L +    +   G+  + P G      +    R   
Sbjct: 263 KLDEYQTMLAEAEKRDHRRLGTELDLFS-FPDEIGSGLPVFHPNGAIVRLEMEEHSRRRH 321

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------ADRNDKAMIYGPT 109
            + G   ++ P    +DL+ +SG    Y + M                 +  +     P 
Sbjct: 322 IQAGYSFVNTPHATKSDLFEKSGHLGFYKEGMFPPLQLDAEYDAEGNQTKPGQDYYLKPM 381

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +
Sbjct: 382 NCPMHNLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTED 440

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +     +    + +    GL    +   +  P       E    +     +V  +   
Sbjct: 441 QLEEELTSVLEFIISLLKDYGLDDFYLELSTKDPKKFVGDDEIWERSTEILQRVATNSGL 500

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P P                       A      + +  D++    ++S   ++    
Sbjct: 501 DLVPDPE--------------------GAAFYGPKISVQAKDAIGRTWQMSTVQLD---- 536

Query: 288 FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +   DG K   + +     G++     V+   + G    W   +AP
Sbjct: 537 FNLPERF----ELEYTSPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAP 589

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++  I +    +      EK+  +L   G     D   +++  +         P  ++ 
Sbjct: 590 HQVVGIPVA---EDFIPHLEKVVDKLRARGFRAEVDTSDDRMQKKIRTHTTGKIPFMLLA 646

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF---SNNRP 447
           G + V    V  +         + ++E +   S      +N +P
Sbjct: 647 GGRDVEADAVSFRFLDGTQVNGVPVDEAVELISTWILERNNTQP 690


>gi|89898569|ref|YP_515679.1| prolyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|114152181|sp|Q253K4|SYP_CHLFF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89331941|dbj|BAE81534.1| prolyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 577

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 134/223 (60%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +   +DA + S++L+ + G I + +KG+Y++ PL  +    +  I+REE
Sbjct: 1   MRTSQLFYKTSKNANKDAAVLSYELLEKAGYIFKTAKGVYTYTPLFWRVALKMMDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E  +  L DR DK +   PTHEEV+T   
Sbjct: 61  LNAIGGQELMLPILHPAELWQKTGRWEAFRSEGLLYTLTDREDKELCLAPTHEEVVTMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR+REFLM+D+Y+F  +PE     Y+K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAREFLMEDSYTFSDSPEQMNEQYDKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            +Y +IF RL +K + + A+ G IG   S EF VL   GE  +
Sbjct: 181 RAYQKIFDRLEIKYVIVEADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               +    +             +++  + ++     I       YA         L  S
Sbjct: 341 NCPIEFYADETTRCMTNFICAGNAKDKHYKNVNWDRDIP---RPEYADFLLAEAGDLCPS 397

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                     G+EV HIF  GT+Y+      F+   G+     MG+YGIG  R +AA +E
Sbjct: 398 NGNAPYEIFEGVEVAHIFNLGTRYTECFDVGFQNEQGEQQTCWMGTYGIGIGRTLAACVE 457

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D +GI+WP ++APF IS++     D   ++A EKIY  L   G     DD  E++G 
Sbjct: 458 QLADDRGIVWPKAIAPFDISIL-YNGGDSASQEAAEKIYTELQNSGYAPLLDDRNERLGF 516

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +   +DL+G P ++I+G  F++   +EI+ R +G +  +  ++ +++  +    ++ +
Sbjct: 517 KLKDSDLIGIPYKLILGKTFLNSGTLEIESR-SGEKFSVQPKDFVHWCENYLPQSQKL 573


>gi|6321808|ref|NP_011884.1| hypothetical protein YHR020W [Saccharomyces cerevisiae S288c]
 gi|731640|sp|P38708|YHI0_YEAST RecName: Full=Putative prolyl-tRNA synthetase YHR020W; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|500692|gb|AAB68873.1| Yhr020wp [Saccharomyces cerevisiae]
 gi|285809922|tpg|DAA06709.1| TPA: hypothetical protein YHR020W [Saccharomyces cerevisiae S288c]
          Length = 688

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 158/441 (35%), Gaps = 76/441 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      +N+     ++    G      P  + S  L 
Sbjct: 200 QQILTKGEMLDYYDVSGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLE 259

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   ++SYR+LP    Q  
Sbjct: 260 KEKDHVEGFAPEVAWVTRAGSSELEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWN 319

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT + ++    ++   Y  ++    L ++P+ 
Sbjct: 320 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTAKDAEEEVLQILDFYAGVYEE--LLAVPV- 376

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F               DF                 
Sbjct: 377 ---------------VKGRKTEKEKFAG------------GDFTTTCEGYIPQ------- 402

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--- 313
                                + RGI+     + G  +S   + + +   G DH      
Sbjct: 403 ---------------------TGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAY 441

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACE 366
             S+G+ + RV+  ++    D KG++ P  V+ F+  +I +   K   +  R    +   
Sbjct: 442 QNSWGL-STRVIGVMVMIHSDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETAR 500

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            + +RL KVG   F D +     G +F+  +L G P+++ +G K +  ++V +  R    
Sbjct: 501 SVESRLKKVGIRAFGDYNDNYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSK 560

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +  +S +E+           +
Sbjct: 561 KYVVSFDELEARIPEILEEMQ 581


>gi|114559273|ref|XP_001168878.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 6 [Pan
           troglodytes]
          Length = 684

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 144/461 (31%), Gaps = 91/461 (19%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            L   +    +AE+  H+ + +       H+ S G   +LP G +  + + A IR E   
Sbjct: 286 LLRAWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAH 345

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM-IYG 107
            G  E+  PTL S  LW +SG ++ Y ++M  +               + R+        
Sbjct: 346 RGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALK 405

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLT 166
           P +      +F    +S+R LP          R E      G+ R R F   DA+ F  T
Sbjct: 406 PMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTT 465

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +            ++  LG     +   + P G         L D  E  +  +  
Sbjct: 466 -DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQALK 520

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P                  +  +   A      +  L D+L    +     ++   
Sbjct: 521 EFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD--- 560

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F    ++ L                                       KG +W   ++P
Sbjct: 561 -FQLPLRFDLQY-------------------------------------KGPLW---LSP 579

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVI 405
           F++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +
Sbjct: 580 FQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFV 636

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           VG K  S   V I+ R      +  L E +        N R
Sbjct: 637 VGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 676


>gi|149017957|ref|ZP_01834416.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|147931521|gb|EDK82499.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
          Length = 617

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 138/213 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E   DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMSSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  PTL SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPTLLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y RIF R GL    +  + G +GG  S EF+ +
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAI 213



 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 14/173 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 441 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 500

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 501 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 560

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 561 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 612


>gi|323304725|gb|EGA58486.1| YHR020W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 687

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 158/441 (35%), Gaps = 76/441 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      +N+     ++    G      P  + S  L 
Sbjct: 199 QQILTKGEMLDYYDVSGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLE 258

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   ++SYR+LP    Q  
Sbjct: 259 KEKDHVEGFAPEVAWVTRAGSSELEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWN 318

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT + ++    ++   Y  ++    L ++P+ 
Sbjct: 319 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTAKDAEEEVLQILDFYAGVYEE--LLAVPV- 375

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F               DF                 
Sbjct: 376 ---------------VKGRKTEKEKFAG------------GDFTTTCEGYIPQ------- 401

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--- 313
                                + RGI+     + G  +S   + + +   G DH      
Sbjct: 402 ---------------------TGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAY 440

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACE 366
             S+G+ + RV+  ++    D KG++ P  V+ F+  +I +   K   +  R    +   
Sbjct: 441 QNSWGL-STRVIGVMVMIHSDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETAR 499

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            + +RL KVG   F D +     G +F+  +L G P+++ +G K +  ++V +  R    
Sbjct: 500 SVESRLKKVGIRAFGDYNDNYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSK 559

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +  +S +E+           +
Sbjct: 560 KYVVSFDELEARIPEILEEMQ 580


>gi|255325106|ref|ZP_05366212.1| threonine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297671|gb|EET76982.1| threonine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 687

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/457 (14%), Positives = 146/457 (31%), Gaps = 52/457 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +  +++E   RD      +L L +    +   G   + P G      +    R    +
Sbjct: 253 EAYQTMVEEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGATVRMEMENHSRNRHVQ 311

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRND------KAMIYGPTHE 111
            G   ++ P +   DL+ +SG  D Y   M          D         +     P + 
Sbjct: 312 AGYSFVNTPHITKGDLFKKSGHLDFYADGMFPPMQLDGEYDEEGNTVKEPQDYYAKPMNC 371

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  
Sbjct: 372 PMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQLE 431

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           +    K+    + +    GL    +   +  P     S E    + +    V        
Sbjct: 432 EEL-TKVLDFIISLLKDYGLSDFYLELSTKDPNKFVGSDEIWERSTSILQSVAEKSGLEL 490

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P P+                      A      + +  D++    ++S   ++    F 
Sbjct: 491 VPDPA--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FN 526

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  +DG K   + +     G++     V+   + G    W   +AP +
Sbjct: 527 LPERF----ELEYTASDGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQ 579

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  I +           E++  +L + G     D   +++  +         P  ++ G+
Sbjct: 580 VVGIPVADEFSPHL---EEVATQLRQKGIRADVDTSDDRMQKKIRNHTTGKVPFMLVAGA 636

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V    V  +         + ++E +   +   +  
Sbjct: 637 RDVEADAVSFRFLDGTQVNGVPVKEAVELIAAWVAER 673


>gi|302386675|ref|YP_003822497.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197303|gb|ADL04874.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 653

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 149/434 (34%), Gaps = 35/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD       L +    +    +G+   +P G K +  +   I +E+ + G +    P + 
Sbjct: 239 RDHNKLGRDLEIFA-TVDVIGQGLPLLMPKGAKIVQTLQRWIEDEEEKRGYMRTKTPLMA 297

Query: 76  SADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
             DL++ S  +D Y + M  L   + +D+     P        +++   KSYR+LP  + 
Sbjct: 298 KKDLYIISDHWDHYKEGMFVLGNEETDDEVFALRPMTCPFQYYVYKQSQKSYRDLPCRYG 357

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +    FR+E      G+ R R+F + + +   + P+  +  +             LGL+ 
Sbjct: 358 ETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQIEEEFKGCVDLAKYCLTTLGLE- 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                      GD+++               + +  D          D I    +     
Sbjct: 416 -----------GDVTYRMSKWDPNNADHYLGTPEMWDEVEDMMRKILDHIGIQYTEAAGE 464

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHY 311
            A Y    D+  + ++      K  +   I            +     +F   DG K   
Sbjct: 465 AAFYGPKLDIQAKNVYG-----KEDTMITI------QLDMFLAERFDMSFVDKDGTKKRP 513

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G      A +   ++G    W   + P ++ ++ I    +   +   K+ A+
Sbjct: 514 YIIHRTSMGCYERTLAWLIEKYEGAFPTW---LCPEQVRILPI---SEKYHEYAGKVAAQ 567

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G     D+  E+IG +   A L   P  ++VG K   +  V ++ R  G      L
Sbjct: 568 LKENGILATVDERAEKIGYKIREARLSKLPYMLVVGQKEEEEGVVSVRSRFNGDEGQHPL 627

Query: 432 EEVINYASHRFSNN 445
              I+         
Sbjct: 628 SGFIDDICREIRTK 641


>gi|156083641|ref|XP_001609304.1| prolyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154796555|gb|EDO05736.1| prolyl-tRNA synthetase, putative [Babesia bovis]
          Length = 705

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 155/431 (35%), Gaps = 69/431 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVES 83
           ++R GM+  +   G Y +LP      +       E   + G      P   S   L  E 
Sbjct: 232 IIRGGMVEYYDISGCYIYLPSSYFIWEVFQQWFNENIKKEGVENCYFPMFVSKQKLETEK 291

Query: 84  GRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    D    + +   PT E +M   F   I+S+R+LP    Q     
Sbjct: 292 NHIEGFSPEVAWVTKYGDSDFVEPIAIRPTSETIMYPEFSKWIRSHRDLPLKLNQWCSVV 351

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +RSREFL ++ ++   + E + ++   M   Y R +      ++P+    
Sbjct: 352 RWEFKQPTPFLRSREFLWQEGHTAHKSEEDAMNTVMTMLRLYQRFYEE--FLAVPV---- 405

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             I G+ S E              S   ++  IP                          
Sbjct: 406 --IPGEKSVEERFAGGK-------STMTIEAYIPG------------------------- 431

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                             S RGI+       GT ++      F+  +G        S+G 
Sbjct: 432 ------------------SGRGIQAATSHLLGTNFAKMFDIVFEDENGVKQLAHQTSWGF 473

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVG 376
              R +   I    D +G++ P  V+  +I ++ I A  ++ +D     E +YARL K G
Sbjct: 474 T-TRSIGVSIMIHGDDQGLVIPPRVSKVQIVIVPIIAKKELQKDIMAVAEDMYARLKKAG 532

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                DD  G   G +F   +L G PL++ +G++ +      + +R  G + D+ LE + 
Sbjct: 533 FRTHLDDRVGYTPGFKFNHWELRGVPLRIEIGARDIQTQSCRVCYRYNGHKTDVKLETLE 592

Query: 436 NYASHRFSNNR 446
                   + +
Sbjct: 593 QSIGEALEDIQ 603


>gi|314923371|gb|EFS87202.1| threonyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|315093365|gb|EFT65341.1| threonyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|315103379|gb|EFT75355.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327327544|gb|EGE69320.1| threonine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 689

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREDLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKEEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQINGVVLDEAVRIITAWDSRHR 674


>gi|323341796|ref|ZP_08082029.1| proline--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464221|gb|EFY09414.1| proline--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 569

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 101/219 (46%), Positives = 141/219 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   ++E+ RD +  S  L++R G I + S G+Y ++PLG K  + +  IIREE
Sbjct: 9   MKLSKSFFYTIREDVRDEDSTSGNLLVRAGYIKKSSSGVYMYMPLGLKVKNKIENIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A EM++PTL   D++V SGR D  G  M +L DR  K  + GPTHEE+     + 
Sbjct: 69  MNAIDAQEMTMPTLIPEDVYVASGRRDIIGTSMFQLDDRFKKPFVLGPTHEELFAQAAQM 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF+ YQ Q KFRDE RPRFG++R REF+MKD+Y+FD   E +  SY+ MF +
Sbjct: 129 KIRSYKDMPFSLYQFQTKFRDEARPRFGLIRVREFVMKDSYTFDADLESADKSYDAMFEA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           Y RIF R+GL    +RA++G +GG LS EF  + D GE 
Sbjct: 189 YKRIFDRVGLDYRIVRADTGIMGGLLSEEFQAVTDIGED 227



 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 1/223 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E  V   K        +   + +D   +N     + A +        E   +   +    
Sbjct: 346 EIDVVVDKMIEGLRNFTVGANENDHHFINVNHSDFEATHIIDVSNVKEGDPNPDGKGVLT 405

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ++GIEVG+ F  GTKYS  M   +   + K   V MGSYGIG  R +AAV+E ++D  G
Sbjct: 406 FSKGIEVGNTFKLGTKYSKAMGLEYLDQNNKLQDVYMGSYGIGLGRTLAAVVEQNNDENG 465

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP ++APF+++++ I   ++      + +Y  LS+ G +V  DD  ++ G +F   DL
Sbjct: 466 IVWPMNLAPFQVAIVVINNKNEEHMAFADDLYQELSQAGLEVILDDRKQRPGIKFNDMDL 525

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G PL++ VG + V   +VE+K R +G  + +  E+++N    
Sbjct: 526 IGVPLRITVG-RDVEHGEVELKERKSGNEQKIKREDILNVLKS 567


>gi|254446533|ref|ZP_05060009.1| prolyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198260841|gb|EDY85149.1| prolyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 588

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 101/228 (44%), Positives = 149/228 (65%), Gaps = 7/228 (3%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK ++P L+E+P +AEI SHKL+LR G++ +   GIY++LPLG KAL+NV  +  EE N
Sbjct: 4   WSKNYIPTLKESPAEAEIDSHKLLLRAGLVRKVGSGIYAFLPLGTKALENVKRLCCEEMN 63

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-------MIYGPTHEEVMT 115
           R GA+E+ +P +  A+ W    R+++  + M ++A   +KA        + GPTHEE++T
Sbjct: 64  RAGAMELLMPAVVPAEYWKAGPRWNAAREIMYQVASAGEKAEFPEEPAFVLGPTHEEIVT 123

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            +      SYR++  TFYQ+Q KFR+E+RPR+G+MR+REF+MKD YSFD T E +  +Y 
Sbjct: 124 LLIGGEGMSYRDMGKTFYQVQTKFRNEIRPRYGLMRAREFIMKDGYSFDATDEEATATYK 183

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
            M  +Y   F R GLK I + A++G +GG  SHEF+V A+ G+  V  
Sbjct: 184 NMAKAYEAFFSRCGLKFISVEADTGVMGGAFSHEFMVPAEVGDDDVVY 231



 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 2/172 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSL--PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
               R IEVGHIF  GTKYS      A +   DG      MG YGIG  R + ++IE  H
Sbjct: 415 LEIQRAIEVGHIFKLGTKYSENEEFGALYVDKDGNRQPSVMGCYGIGISRTLQSIIEQKH 474

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  GI+WP +VAP+++ +  +    +       K+       G  V  DD  E+ G +F 
Sbjct: 475 DKNGIVWPWAVAPYQVIITVLDPGMEEADTLAIKLGEAAEAAGASVLVDDREERPGVKFK 534

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ADL+G PL+V +G + + + +VE+K R +   + +++ +            
Sbjct: 535 DADLIGIPLRVTIGGRGLKNGEVEMKWRDSDSVQKVAIADAKQALVEGIKEK 586


>gi|315084265|gb|EFT56241.1| threonyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
          Length = 689

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 149/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREGLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKKEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLQLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+  +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQVNGVVLDGAVRIIAAWDSRHR 674


>gi|256076493|ref|XP_002574546.1| glutamyl-tRNA synthetase cytoplasmic (glutamate--tRNA ligase) (glurs)
            [Schistosoma mansoni]
 gi|238659754|emb|CAZ30779.1| glutamyl-tRNA synthetase, cytoplasmic (glutamate--tRNA ligase)
            (glurs), putative [Schistosoma mansoni]
          Length = 1306

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 163/454 (35%), Gaps = 78/454 (17%)

Query: 2    RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREE 60
            ++SK  +   +E    ++  S +L++++ ++  +   G Y   P       ++   + E+
Sbjct: 793  KQSKLAIEASKET-DFSDWYS-ELIIKSELLDYYDISGCYILRPWAYHMWQSIQCFMDEK 850

Query: 61   QNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMT 115
                G      P   S   L  E      +  E+  +    D    + +   PT E +M 
Sbjct: 851  LKVMGIENAYFPMFVSKSALEREKNHVTDFAPEVAWVTKSGDTDLAEPIAIRPTSETIMY 910

Query: 116  DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             IF   I+S+R+LP    Q     R E +     +R+REFL ++ ++       ++    
Sbjct: 911  PIFAKWIQSHRDLPLRINQWSNVVRWEFKHPQPFLRTREFLWQEGHTAFAEKADAEAEVR 970

Query: 176  KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
             +   Y  ++    L ++P+                V     E + F   D+        
Sbjct: 971  VILDLYAEVYE--YLLAVPV----------------VKGRKTEREKFAGADY-------- 1004

Query: 236  NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                         E   D          R I+     + G  +S
Sbjct: 1005 -------------------------TTTVEIYIDGNG-------RAIQGATSHHLGQNFS 1032

Query: 296  LPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 T+     GK  YV   S+G+   R +  +I    D KG++ P  VAP++I ++  
Sbjct: 1033 RMFDVTYDHPVTGKPAYVYQNSWGLT-TRTLGVLIMVHSDDKGLVLPPRVAPYQIVIVPC 1091

Query: 355  K-------AHDQVCRDACEKIYARLSKVG--CDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
                       +    A   ++  L+K      V  DD      G +F   +L G P+++
Sbjct: 1092 GITAKTTVQERETLLSAAHSVFELLNKSNKQFRVHCDDRDNVSPGWKFNHWELKGVPIRL 1151

Query: 405  IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +G + V+D KV +  R TG R ++ ++ +IN  
Sbjct: 1152 EIGPQEVADRKVCLVLRHTGERVNVPMDSLINEL 1185


>gi|154487350|ref|ZP_02028757.1| hypothetical protein BIFADO_01200 [Bifidobacterium adolescentis
           L2-32]
 gi|154083868|gb|EDN82913.1| hypothetical protein BIFADO_01200 [Bifidobacterium adolescentis
           L2-32]
          Length = 677

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/459 (16%), Positives = 149/459 (32%), Gaps = 56/459 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLQWYKDSMYPPMRLDEEKDENGNVIKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELKSLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVA------- 472

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                   D  D               A      + +  D++    +VS   ++    F 
Sbjct: 473 ---KESGLDLVDD----------PCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +           +K  A L +       D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA---DEFAPHLQKFIASLEEETVRCEIDLSDDRFGKKIRNASKSKAPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRFS 443
           + ++++ V  + R       + ++E    ++     R  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDEAKANILTVIKKRVQ 664


>gi|256076491|ref|XP_002574545.1| glutamyl-tRNA synthetase cytoplasmic (glutamate--tRNA ligase) (glurs)
            [Schistosoma mansoni]
 gi|238659753|emb|CAZ30778.1| glutamyl-tRNA synthetase, cytoplasmic (glutamate--tRNA ligase)
            (glurs), putative [Schistosoma mansoni]
          Length = 1346

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 163/454 (35%), Gaps = 78/454 (17%)

Query: 2    RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREE 60
            ++SK  +   +E    ++  S +L++++ ++  +   G Y   P       ++   + E+
Sbjct: 833  KQSKLAIEASKET-DFSDWYS-ELIIKSELLDYYDISGCYILRPWAYHMWQSIQCFMDEK 890

Query: 61   QNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMT 115
                G      P   S   L  E      +  E+  +    D    + +   PT E +M 
Sbjct: 891  LKVMGIENAYFPMFVSKSALEREKNHVTDFAPEVAWVTKSGDTDLAEPIAIRPTSETIMY 950

Query: 116  DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             IF   I+S+R+LP    Q     R E +     +R+REFL ++ ++       ++    
Sbjct: 951  PIFAKWIQSHRDLPLRINQWSNVVRWEFKHPQPFLRTREFLWQEGHTAFAEKADAEAEVR 1010

Query: 176  KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
             +   Y  ++    L ++P+                V     E + F   D+        
Sbjct: 1011 VILDLYAEVYE--YLLAVPV----------------VKGRKTEREKFAGADY-------- 1044

Query: 236  NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                         E   D          R I+     + G  +S
Sbjct: 1045 -------------------------TTTVEIYIDGNG-------RAIQGATSHHLGQNFS 1072

Query: 296  LPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 T+     GK  YV   S+G+   R +  +I    D KG++ P  VAP++I ++  
Sbjct: 1073 RMFDVTYDHPVTGKPAYVYQNSWGLT-TRTLGVLIMVHSDDKGLVLPPRVAPYQIVIVPC 1131

Query: 355  K-------AHDQVCRDACEKIYARLSKVG--CDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
                       +    A   ++  L+K      V  DD      G +F   +L G P+++
Sbjct: 1132 GITAKTTVQERETLLSAAHSVFELLNKSNKQFRVHCDDRDNVSPGWKFNHWELKGVPIRL 1191

Query: 405  IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +G + V+D KV +  R TG R ++ ++ +IN  
Sbjct: 1192 EIGPQEVADRKVCLVLRHTGERVNVPMDSLINEL 1225


>gi|227549145|ref|ZP_03979194.1| threonyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078786|gb|EEI16749.1| threonyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 884

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 70/456 (15%), Positives = 146/456 (32%), Gaps = 54/456 (11%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD     +++ L +    +   G+  + P G      +    R      G 
Sbjct: 254 LHMLREAEKRDHRRLGNEMDLFS-FPDELGSGLPVFHPDGGIIRLAMEDHSRRRHIEAGY 312

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEVM 114
             ++ P +    L+ +SG  D Y   M      + +                 P +  + 
Sbjct: 313 SFVNTPHVTKGSLFSKSGHLDWYADGMFPPMKLDGEIDDDGNVVKQPQDYYVKPMNCPMH 372

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  +  
Sbjct: 373 NLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEDQLEAE 431

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
              +    + +    GL    +   +      +  + I    T   Q    K  ++    
Sbjct: 432 LTSVLEFIISLLKDYGLNDFYLELSTKDPQKYIGDDEIWQRSTDILQSVAEKSGLELV-- 489

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                               A  A      + +  D++    ++S   ++    F    +
Sbjct: 490 -----------------PDPAGAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLPER 528

Query: 294 YSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +      T+   DG K   V +     G++     V+   + G    W   +AP ++  I
Sbjct: 529 F----DLTYTAPDGTKKRPVMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVVGI 581

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +        D    +  +L + G     D   +++  +         P  ++ G++ V 
Sbjct: 582 PVADDFAGHLD---SVTQKLRERGIRAEVDHSDDRMQKKIRNHTTSKVPFMLLAGARDVE 638

Query: 413 DSKVEIKHRLTGIREDMSLEEVIN----YASHRFSN 444
              V  +         + + E ++    + S R + 
Sbjct: 639 ADAVSFRFLDGTQVNGVPVAEAVDIIDAWVSERINE 674


>gi|15639153|ref|NP_218599.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025393|ref|YP_001933165.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094411|sp|O83195|SYP_TREPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701353|sp|B2S2A7|SYP_TREPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3322426|gb|AAC65149.1| prolyl-tRNA synthetase (proS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017968|gb|ACD70586.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 617

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 96/270 (35%), Positives = 140/270 (51%), Gaps = 6/270 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +F P L+  P DA IASH+L++R G + + + G++++LPLG +    + AIIREE  
Sbjct: 1   MSAFFAPTLRSAPADATIASHQLLMRAGYVRKIANGLFAYLPLGLRVRHKIEAIIREELE 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G +E + P +  A+LW ESGR+   G E+LR  +R D  +++ PT EE  T + R   
Sbjct: 61  AIGCLECTAPVVTPAELWKESGRWYRMGAELLRAKNRLDHELLFSPTAEESFTALVRGDC 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P + YQI  K+RDE+RPR+G+MR+REF M DAYSF         +Y K   +Y 
Sbjct: 121 TSYKHFPLSLYQINAKYRDEIRPRYGLMRAREFTMADAYSFHTDCACLARTYEKFAHAYR 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS------EN 236
            IF R+GL  I + A  G +GG  S EF+V +  G+  +                     
Sbjct: 181 AIFRRIGLSVIAVHAHLGAMGGQESEEFMVESAVGDNTLLLCPHCTYAANCEKAVGQRPL 240

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            D  D    +          AA  +VH   
Sbjct: 241 PDTHDTHLKDEHEGSDLKTPAAMREVHTPH 270



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 3/176 (1%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      +G E+GH+F  G KY+  M  TF    G   +  MG YGIG  R +A+V
Sbjct: 438 CIHCGAPLYEKKGNELGHLFKLGDKYTRSMHLTFTDEQGVRQFPLMGCYGIGLDRTLASV 497

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+ HD +GI WP +++P+ + LI I  H Q    A E +Y +L   G +V +DD  E+ 
Sbjct: 498 VENHHDTRGISWPLAISPYAVVLIPI-PHTQAPYAAAEALYVQLRTRGVEVLFDDRAERP 556

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +FA ADL+G PL+V++ +K +   +VE   R        + EE   + +     
Sbjct: 557 GVKFADADLIGIPLRVVLSAKTLP--RVECTTRCGAHTYFFTQEEASEHIARLLEQ 610


>gi|306822719|ref|ZP_07456097.1| threonine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|304554264|gb|EFM42173.1| threonine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
          Length = 708

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 58/453 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 273 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 331

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 332 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNIIKQGFDYYLKPMNC 391

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 392 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 450

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 451 KDELKNLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVAKES---- 506

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                              +       A      + +  D++    +VS   ++    F 
Sbjct: 507 ----------------GLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 546

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 547 LPERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 599

Query: 349 ISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           +  + +        +    +    A L +       D   ++ G +   A     P  +I
Sbjct: 600 VLGVPV------ADEFAPHLQRFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILI 653

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           VG + ++++ V  + R       + ++E  N  
Sbjct: 654 VGEEDMNNNAVSFRFRDGSQLNGVPVDEAKNQI 686


>gi|325263251|ref|ZP_08129986.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324031644|gb|EGB92924.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 653

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 145/448 (32%), Gaps = 36/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L T  +    +G+   +P G K +  +   I +E++
Sbjct: 226 LNEYLQYLEEVKKRDHNKLGREMELFT-TVDVIGQGLPLLMPKGAKIIQTLQRWIEDEED 284

Query: 63  RT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFR 119
              G I    P +  +DL+  SG +D Y   M  L D   N +     P        +++
Sbjct: 285 NNWGYIRTKTPLMAKSDLYQISGHWDHYKDGMFVLGDEETNKEVFALRPMTCPFQYYVYK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  KSYR+LP  + +    FR+E      G+ R R+F + + +   + P+     +    
Sbjct: 345 ASQKSYRDLPLRYSETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-VRPDQMVEEFKGCL 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               +    LGL+                   +   D   T+ +     +         +
Sbjct: 404 ALAKKCLTTLGLQDDVTY-------------HLSKWDPDNTEKYIGDAEVWNETEGHIRN 450

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              +  L     +     A      +    +   +   +     +               
Sbjct: 451 I--LTELEVPFVEDAGEAAFYGPKVDINAKNVYGKEDTMITIQWDALLAEQ--------F 500

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +G K     +    IG      A +   + G    W   + P ++ ++ +   
Sbjct: 501 DMYYIDQNGDKVRPYIIHRTSIGCYERTLAWLIEKYAGMFPTW---LCPEQVRILPV--- 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+   +         D   E+IG +   A L   P  +IVG K  ++  V 
Sbjct: 555 SDKYLDYADKVENEMKANNILCTVDSRSEKIGYKIREARLAKIPYMLIVGEKEEAEGTVS 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G      L+  I+         
Sbjct: 615 VRSRFLGDEGAKGLQGFIDDVCREIRTK 642


>gi|261402296|ref|YP_003246520.1| prolyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261369289|gb|ACX72038.1| prolyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 464

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 159/429 (37%), Gaps = 72/429 (16%)

Query: 26  MLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           + + G+  +    KG   +LP G K       +IR+  + TG  E   P L   DL   E
Sbjct: 20  LEKAGIYDVRYPIKGCGVYLPYGFKIRRYAFELIRKLLDETGHDETLFPMLIPEDLLAKE 79

Query: 83  SGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +     +  E+  +        D  +   PT E  +  + R  +K + +LP   YQI   
Sbjct: 80  AEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETPIYYMMRLWVKVHTDLPIKVYQIVNT 139

Query: 139 FRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           FR E +    ++R RE    K+A++   T E ++    +    Y + F  LG   IP   
Sbjct: 140 FRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAEKQVEEAISIYKKFFDVLG---IPHLV 196

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
              P                         +  FP       FD I     ++        
Sbjct: 197 SKRPE------------------------WDKFPGAEYTMAFDTIFPDGRVM-------- 224

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                    ++  +   G  +S      F+   G   +     Y
Sbjct: 225 -------------------------QIATVHNLGQNFSKTFEIIFETPTGDKDFAYQTCY 259

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKV 375
           GI + RV+A++I    D KG+I P  VAP +I ++ +  K   ++  +  ++IY RL   
Sbjct: 260 GI-SDRVIASIIAIHGDEKGLILPPVVAPLQIVIVPLIFKGKKEIVMEKSKEIYERLKDK 318

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V+ DD   + G +F   ++ G PL++ VG K +   K+ I  R T  +  +  E++ 
Sbjct: 319 -YRVYIDDRDIRPGKKFYDWEIKGVPLRIEVGPKDIESGKITIFRRDTMEKFQVEDEQLE 377

Query: 436 NYASHRFSN 444
           +      +N
Sbjct: 378 DEIEKTLNN 386


>gi|15611293|ref|NP_222944.1| prolyl-tRNA synthetase [Helicobacter pylori J99]
 gi|11135064|sp|Q9ZMJ6|SYP_HELPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4154734|gb|AAD05795.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 576

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 95/231 (41%), Positives = 130/231 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + S K   + G I+Q   GIY++LPL +K LD +  +  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSPKHPGKAGYIYQIGSGIYNFLPLAKKVLDKIENVTHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++     
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAA 231



 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 85/181 (46%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 396 ESDCCPNCQGALKYHKSLEVGHIFKLGQSYAKSLKASFLDKNGKERFFEMGCYGIGISRL 455

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++ ++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 456 LSVILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDALLDDR 515

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + +   + E   R    ++ +   E+        ++
Sbjct: 516 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEKILEMLAS 575

Query: 445 N 445
            
Sbjct: 576 E 576


>gi|228476457|ref|ZP_04061147.1| prolyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228251878|gb|EEK10924.1| prolyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 621

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 148/244 (60%), Gaps = 2/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +  L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 2   MKQSKMLISTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 62  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 122 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 182 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAVTP--ERTNLNRWVVLDKSIASLDEIPE 239

Query: 241 DIIS 244
           D++ 
Sbjct: 240 DVME 243



 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 395 AVVGANEDGYHLTGVNPERDFKAEYVDIREVKEGEISPDGQGV--LQFARGIEIGHIFKL 452

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 453 GTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWG 512

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +AP+ + LI +   D+      E++ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 513 INFPKELAPYDVHLITVNTKDEEANALTERLEAALMAEGYDVLTDDRNERVGSKFSDSDL 572

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + TG   +++ + +I   +
Sbjct: 573 IGLPIRVTVGKK-ASEGVVEVKIKATGDTIEVNADNLIETLA 613


>gi|171742906|ref|ZP_02918713.1| hypothetical protein BIFDEN_02023 [Bifidobacterium dentium ATCC
           27678]
 gi|171278520|gb|EDT46181.1| hypothetical protein BIFDEN_02023 [Bifidobacterium dentium ATCC
           27678]
          Length = 708

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 58/453 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 273 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 331

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 332 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNIIKQGFDYYLKPMNC 391

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 392 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 450

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 451 KDELKNLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVAKES---- 506

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                              +       A      + +  D++    +VS   ++    F 
Sbjct: 507 ----------------GLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 546

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 547 LPERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 599

Query: 349 ISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           +  + +        +    +    A L +       D   ++ G +   A     P  +I
Sbjct: 600 VLGVPV------ADEFAPHLQRFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILI 653

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           VG + ++++ V  + R       + ++E  N  
Sbjct: 654 VGEEDMNNNAVSFRFRDGSQLNGVPVDEAKNQI 686


>gi|328351896|emb|CCA38295.1| threonyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 454

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 145/435 (33%), Gaps = 49/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI  +S G   +LP G +  + +   ++ +Q + G  E+  P +    LW  SG +D+Y 
Sbjct: 50  MIDSNSPGSVFFLPHGTRLFNKLVQFMKIQQKKHGFDEVITPLIYKKKLWEISGHWDNYK 109

Query: 91  KEMLRLAD--------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           ++M R+          ++++     P +      I++   +S   LP  +       R+E
Sbjct: 110 EDMYRVEGNEVSHGDAKDEETFGLKPMNCPGHCLIYKRFDRSINELPIRYSDWSSLHRNE 169

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R F   D + F  T E       K       ++   GL    +   + P
Sbjct: 170 ASGALTGLTRVRRFHQDDGHIF-CTQEQISAEIMKTLHLIKLVYGVFGLSDYTLMLSTRP 228

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + E    A+T    V       D   PS                      A    
Sbjct: 229 DNYVGTLEEWNSAETQLKSVL------DQVAPSS-------------WSIREGDGAFYGP 269

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +    D+     ++    ++      F  KY  P    F         + +     G+
Sbjct: 270 KIDILSRDNYSREHQIGTIQLDFQLPHRFELKYR-PHEGDF------KPPIMIHRAVFGS 322

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----HDQVCRDAC------EKIYAR 371
           +    A++   + GK   WP  + P +  +I I +         RD         +    
Sbjct: 323 IERFMALLIDHYQGK---WPFWMNPRQAVIIPINSSHVGKANEVRDLLSGRSNDYETLDD 379

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L     D+  D   E +G +   A    +   ++VG K + ++ + ++ R +      ++
Sbjct: 380 LVNHQFDIDIDSRAETVGYRTRDALNKSYSYIILVGDKELENNVISLRSRDSRKVTTKTV 439

Query: 432 EEVINYASHRFSNNR 446
           EEV         + +
Sbjct: 440 EEVRELFQELVRSYQ 454


>gi|314966718|gb|EFT10817.1| threonyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
          Length = 689

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 150/462 (32%), Gaps = 47/462 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREDLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFNFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVTRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K    +L I    GL    +   +              +D+ + + F   
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTR------------ESDSAKEEKFIGS 468

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           D                  L  + +      A      + ++ D++    ++S    +  
Sbjct: 469 DEDWQVATDTLDQVCRSTGLRLVPD--PGGAAFYGPKVSVQVRDAIGRTWQMSTIQYDFN 526

Query: 286 HIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                           +  ADG     + + S  +G++     V+   + G   +W   +
Sbjct: 527 QPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW---L 575

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P ++ L+ +    +   D        L   G  V  D   ++ G +   A     P  +
Sbjct: 576 SPVQVRLVPVA---EAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFIL 632

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I G +      V  + R       + L+E +   +   S +R
Sbjct: 633 IAGGEDAEAGAVSFRLRDGSQINGVVLDEAVRIITAWDSRHR 674


>gi|307565532|ref|ZP_07628012.1| proline--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307345691|gb|EFN91048.1| proline--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 493

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 169/463 (36%), Gaps = 88/463 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +  Q + +G     P G    +N+   + +    TG 
Sbjct: 5   LKELTKRADNYSQWYNDLVVKADLAEQSAVRGCMVIKPYGYAIWENIQGQLDKMFKATGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEM-----LRLADRN-------------DKAMIYG 107
                P L        E+   + + KE       RL  +              ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVEGFAKEAAVVTHYRLKTKENGEGVEVDPNAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATK 183

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   K+               + + A+                       F  K  
Sbjct: 184 -QEAEEEAKLM--------------LKVYAD-----------------------FAEKWL 205

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               I    ++ +                                       + ++ G  
Sbjct: 206 AVPVIQGVKSETERFAGALDTYTIEAM---------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKIAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++ +I I   ++       K+      L + G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVVIIPIFKGEEQLEQLKNKLQPVIDELREAGVTVKFDDSDNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +G + + ++ +E+  R T  +E +S + + +Y  H     +
Sbjct: 364 LAMGGRDLENNTIEVMRRDTLEKESVSFDGITDYIKHLLDEIQ 406


>gi|327330301|gb|EGE72050.1| threonine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 689

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/468 (16%), Positives = 149/468 (31%), Gaps = 59/468 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L   Q+  ++AE   H+ +     +     +   G+  + P G      +   + 
Sbjct: 242 ASREDLAAYQQRIKEAERRDHRKLGAELDLFSFPEEIGPGLVVFHPKGAMLRHLIEEHVI 301

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDK--------AMIY 106
                 G   +  P +    L+  SG    Y   M        +R+++            
Sbjct: 302 ARHMEAGFYFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVIRAGQEYYL 361

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
              +  +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++  
Sbjct: 362 KAMNCPMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTY-C 420

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------LSHEFIVLADTGET 219
           T E +     K    +L I    GL    +   +             S E   +A     
Sbjct: 421 TREQAPGEIKKQIEFFLSILADFGLNDFYLELSTRESNSAKEEKFIGSDEDWQVATDTLD 480

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           QV  S      P P                       A      + ++ D++    ++S 
Sbjct: 481 QVCRSTGLQLVPDPG--------------------GAAFYGPKVSVQVRDAIGRTWQMST 520

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              +                  +  ADG     + + S  +G++     V+   +     
Sbjct: 521 IQYDFNQPER--------FDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAAAFP 572

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +W   ++P ++ L+ +    +   D   +    L   G  V  D   ++ G +   A   
Sbjct: 573 VW---LSPVQVRLVPVA---EAFNDYVTEFAEVLGSRGIRVETDLSSDRFGKKIRNASKE 626

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             P  +I G +      V  + R       + L+E +   +   S +R
Sbjct: 627 KVPFILIAGGEDAEAGAVSFRLRDGSQVNGVVLDEAVRIIAAWDSRHR 674


>gi|237733955|ref|ZP_04564436.1| prolyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|229383036|gb|EEO33127.1| prolyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 479

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 153/423 (36%), Gaps = 68/423 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
            +  ++   S KG   + P      + +   + +    TG   + +P L    L   ES 
Sbjct: 26  RKAELMDYSSVKGFIIYRPYSYAMWEAIQQYMDKRFKETGHENVYMPMLIPQSLLQKESD 85

Query: 85  RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E   +     D  ++ +I  PT E +  + +   + SYR+LP  + Q     R
Sbjct: 86  HVEGFAPECAIVTKGGLDDLEENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVR 145

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +     +R  EFL ++ ++   +   ++    +M   Y        L +IPM     
Sbjct: 146 WE-KTTRPFLRGSEFLWQEGHTVHASETEARAETLQMLEIYEDTAK--NLLAIPMLT--- 199

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             G     E    A+  ET    +       + S  + +                     
Sbjct: 200 --GRKTEREKFAGAE--ETYTIEALMHDGKALQSGTSHY--------------------- 234

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                                        FG  ++      F   + K  YV   S+G+ 
Sbjct: 235 -----------------------------FGQGFAKAFDMKFLSKENKLEYVYQTSWGV- 264

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R++ A+I    D  G++ P  VAP ++ +I I+       D   +I  +L + G  V 
Sbjct: 265 STRLLGAIIMVHGDNNGLVLPPRVAPTQVMIIPIQQQKAGVLDKAYEIEKQLKEAGIRVK 324

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYAS 439
            D   +  G +F+ A++ G PL++ +G K + ++   I  R  G +E  +L+ E+IN   
Sbjct: 325 VDASDKSPGWKFSEAEMRGVPLRLEIGPKDIENNACVIAKRNDGTKEKYALDQELINTIK 384

Query: 440 HRF 442
              
Sbjct: 385 TLL 387


>gi|227503501|ref|ZP_03933550.1| threonyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227076004|gb|EEI13967.1| threonyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 687

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/455 (14%), Positives = 143/455 (31%), Gaps = 52/455 (11%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +++E   RD      +L L +    +   G   + P G      +    R    + G
Sbjct: 255 YQTMVEEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGATVRMEMENHSRNRHVQAG 313

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHEEV 113
              ++ P +   DL+ +SG  D Y   M      + +                 P +  +
Sbjct: 314 YSFVNTPHITKGDLFRKSGHLDFYSDGMFPPMQLDGEYDAEGNTVKEPQDYYAKPMNCPM 373

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  + 
Sbjct: 374 HNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQLEEE 433

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
              ++    + +    GL    +   +  P     S E    +      V         P
Sbjct: 434 L-TQVLDFIISLLEDYGLSDFYLELSTKDPNKFVGSDEIWERSTAILQSVAEKSGLELVP 492

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++    F   
Sbjct: 493 DPE--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLP 528

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +  +DG K   + +     G++     V+   + G    W   +AP ++ 
Sbjct: 529 ERF----ELEYTASDGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVM 581

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +           E + A+L + G     D   +++  +         P  ++ G++ 
Sbjct: 582 GIPVADD---FVPHLEGVAAKLRRKGIRADVDTSDDRMQKKIRNHTTGKVPFMLVAGARD 638

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V    V  +         + ++E +   S   +  
Sbjct: 639 VEAGAVSFRFLDGTQVNGVPVDEAVELISTWVAER 673


>gi|325269446|ref|ZP_08136063.1| proline--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324988367|gb|EGC20333.1| proline--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 493

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 173/463 (37%), Gaps = 88/463 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+   + AE  S     L+++  +  Q + +G     P G    + + A +      TG 
Sbjct: 5   LKHMTKRAENYSQWYNDLVVKAELAEQSAVRGCMVIKPYGYAIWEKMQAQLDRMFKETGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    + ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKATEDGNGVEVDPNAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHAT- 182

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +    K   + LR                            V AD  E  +      
Sbjct: 183 ---REEAEKEAQTMLR----------------------------VYADFAEKWLAVPVVQ 211

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               + SE   F   +   +I                               + ++ G  
Sbjct: 212 G---VKSETERFAGALDTYTIEAM------------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRIAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++++I I   ++  ++  EK+      L  +G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVAVIPIFKGEEQLKELSEKLQPVIDDLRSLGITVKYDDSDNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +G + + ++ +E+  R T  +E +S + ++        + +
Sbjct: 364 LAMGGRDLENNTIEVMRRDTLEKESVSFDGIVGRVKSLLDDIQ 406


>gi|227486766|ref|ZP_03917082.1| proline--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235236|gb|EEI85251.1| proline--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 563

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/219 (43%), Positives = 144/219 (65%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E+P DAE ASHKL++R   I Q + GIYS+LPLG+K L+ + AI+R+  +  GAI
Sbjct: 1   MPTLREDPVDAETASHKLLVRGAFIRQQASGIYSFLPLGKKVLNKIEAIVRDAMDSYGAI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E++   LQ   +W +S R++++G EM +L DR+++    GPT EE   D+ +  + SY+ 
Sbjct: 61  EVATSILQPRQIWDKSTRWETFGPEMFKLKDRHEREYALGPTAEEAFVDLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+FLMKDAY+FD    G + +Y  M+ SY   F +
Sbjct: 121 LPVNLYQIVDKFRDEKRPRFGINRSRDFLMKDAYTFDEDQAGLEKAYMNMWESYEYAFDK 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + L    +  ++G +GG  SHEFI L+++GE  +  +++
Sbjct: 181 MKLDYKIVEGDTGAMGGHKSHEFIALSESGEGVILYTEN 219



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 83/247 (33%), Positives = 119/247 (48%), Gaps = 12/247 (4%)

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +GPIG     +  V+ D   T++       +  + +    +  I +      +       
Sbjct: 326 TGPIGI---EDARVIVDESLTKI------NNLVVGANKPGYHYINANYGRDFEGEIAEDL 376

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                 ++ FD     K  SARGIEVG+IF  GTKYS  + ATF   +G   Y +MGSYG
Sbjct: 377 ILAKEGDQAFDGSGTYK--SARGIEVGNIFQLGTKYSKALDATFLDQNGVSKYFEMGSYG 434

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E  HD KGIIWP SVAPF++ +  IK +D+      E IY +L     D
Sbjct: 435 IGISRSISAIVEQYHDDKGIIWPTSVAPFEVIITLIKPNDEDQAKLAEDIYKKLKARRID 494

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +F   DL+G P ++ VG K   DS VE   R     +++   E IN  
Sbjct: 495 VVLDDRKERPGVKFNDRDLIGIPYRITVG-KDAKDSIVEYSTRAEMENKNIDANEAINLV 553

Query: 439 SHRFSNN 445
                 +
Sbjct: 554 CENIQKD 560


>gi|254568978|ref|XP_002491599.1| Mitochondrial threonyl-tRNA synthetase [Pichia pastoris GS115]
 gi|238031396|emb|CAY69319.1| Mitochondrial threonyl-tRNA synthetase [Pichia pastoris GS115]
          Length = 461

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 145/435 (33%), Gaps = 49/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI  +S G   +LP G +  + +   ++ +Q + G  E+  P +    LW  SG +D+Y 
Sbjct: 57  MIDSNSPGSVFFLPHGTRLFNKLVQFMKIQQKKHGFDEVITPLIYKKKLWEISGHWDNYK 116

Query: 91  KEMLRLAD--------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           ++M R+          ++++     P +      I++   +S   LP  +       R+E
Sbjct: 117 EDMYRVEGNEVSHGDAKDEETFGLKPMNCPGHCLIYKRFDRSINELPIRYSDWSSLHRNE 176

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R F   D + F  T E       K       ++   GL    +   + P
Sbjct: 177 ASGALTGLTRVRRFHQDDGHIF-CTQEQISAEIMKTLHLIKLVYGVFGLSDYTLMLSTRP 235

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + E    A+T    V       D   PS                      A    
Sbjct: 236 DNYVGTLEEWNSAETQLKSVL------DQVAPSS-------------WSIREGDGAFYGP 276

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +    D+     ++    ++      F  KY  P    F         + +     G+
Sbjct: 277 KIDILSRDNYSREHQIGTIQLDFQLPHRFELKYR-PHEGDF------KPPIMIHRAVFGS 329

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----HDQVCRDAC------EKIYAR 371
           +    A++   + GK   WP  + P +  +I I +         RD         +    
Sbjct: 330 IERFMALLIDHYQGK---WPFWMNPRQAVIIPINSSHVGKANEVRDLLSGRSNDYETLDD 386

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L     D+  D   E +G +   A    +   ++VG K + ++ + ++ R +      ++
Sbjct: 387 LVNHQFDIDIDSRAETVGYRTRDALNKSYSYIILVGDKELENNVISLRSRDSRKVTTKTV 446

Query: 432 EEVINYASHRFSNNR 446
           EEV         + +
Sbjct: 447 EEVRELFQELVRSYQ 461


>gi|297792591|ref|XP_002864180.1| hypothetical protein ARALYDRAFT_495320 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310015|gb|EFH40439.1| hypothetical protein ARALYDRAFT_495320 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 542

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 154/462 (33%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +    AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 68  RSQDFNAWYLDVIASAELADYGPVRGTMVIR----------PYGYAIWEAIQEYLNVKFK 117

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 118 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTVGGGKELEEKLVVRPTSETIVNHM 177

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP    Q     R E+R     +R+ EFL ++ ++   TPE ++    +M
Sbjct: 178 FTQWIHSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATPEEAEKEAKQM 236

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+ R   +                                        IP   +
Sbjct: 237 IE----IYTRFAFE----------------------------------HTAIPVIPGRKS 258

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +     +                                 + ++ G     G  +S  
Sbjct: 259 KLETFAGADITYTIEAM---------------------MGDRKALQAGTSHNLGQNFSRA 297

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F   +G+  +V   S+ + + R +  +I +  D  G++ P  +AP ++ ++ I   
Sbjct: 298 FGTQFADENGERQHVWQTSWAV-STRFIGGIIMTHGDDTGLMLPPKIAPIQVVIVPIWKK 356

Query: 358 DQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
           D        A   +   L   G  V  DD  ++  G +F   ++ G PL++ +G + VS 
Sbjct: 357 DTEKSGVLCAASSVKEALQTAGVRVKLDDTDQRTPGWKFNFWEMKGIPLRIEIGPRDVSS 416

Query: 414 SKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPVL 449
           + V +  R      G    +S+E   ++ Y   +    +  L
Sbjct: 417 NSVVVSRRDIPGKAGKVFGISMEPSTLVAYVKEKLDEIQSSL 458


>gi|225352131|ref|ZP_03743154.1| hypothetical protein BIFPSEUDO_03746 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157378|gb|EEG70717.1| hypothetical protein BIFPSEUDO_03746 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 677

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 145/446 (32%), Gaps = 52/446 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNVVKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELKNLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                              +       A      + +  D++    +VS   ++      
Sbjct: 476 ----------------GLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPER 519

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           FG +Y          ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 520 FGLEY--------IAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +           ++  A L +       D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA---DEFAPHLQQFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEV 434
           + ++++ V  + R       + ++E 
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDEA 651


>gi|315222088|ref|ZP_07863998.1| prolyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188838|gb|EFU22543.1| prolyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 619

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 137/215 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQISAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R  ++   +  + G +GG  S EF+ +  
Sbjct: 181 YENIFTRSEIEFKGIIGDGGAMGGKDSQEFMAITP 215



 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 16/229 (6%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D     K    RGIE+GHIF  
Sbjct: 394 AVAGANEDGYHLTGVNPGRDFTAEYVDIREVREGEVSPDGQGVLKFA--RGIEIGHIFKL 451

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+AT    +G+   V MG YGIG  R+++AV+E                   G
Sbjct: 452 GTRYSESMNATVLDENGRAVPVVMGCYGIGVSRLLSAVMEQHARLFVNKTPKGDYRYAWG 511

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   D+      E++ A L K G +V  DD  E+ G +F+ +DL
Sbjct: 512 INFPKELAPFDVHLIPVNVKDEEALVLTEQLEAELVKAGYEVLTDDRNERAGVKFSDSDL 571

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G P++V VG K  +D  VE+K + TG   ++ ++ ++   +     ++
Sbjct: 572 IGLPIRVTVGKK-AADRIVEVKIKATGDTIEVHVDNLLETLAILTKKDK 619


>gi|262197934|ref|YP_003269143.1| threonyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262081281|gb|ACY17250.1| threonyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 628

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 147/485 (30%), Gaps = 83/485 (17%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E  R D  +    L L          G+  +LP G + L  +   + +  N 
Sbjct: 177 KEHLRRLEEAKRRDHRVLGRDLKLF-NFPELAGPGLPFYLPHGARMLQELKDWMWK-LNI 234

Query: 64  TG--------AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKA---------- 103
           +G           +S P +     W  SG   +Y   M  +   D  D+           
Sbjct: 235 SGDYGHPDKVYEPVSTPHILKTTAWSISGHLQNYRDNMFLVYSLDELDEGLLKPQEAAEA 294

Query: 104 ------------------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
                                 P +      +++   KSYR++P  F++    +R E   
Sbjct: 295 KEQAEAEADAAKELGLGNYGLKPMNCPGHIMMYKVGNKSYRDMPVRFFEFGTVYRYERTG 354

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G++R R F   DA+ F  T E         F     +   LG     +  ++     
Sbjct: 355 TLHGLLRVRSFTQDDAHLF-CTAEQLPDELAGAFDFCCFVLDTLGFDYY-VALKTRGENT 412

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S E   LA+     +  ++    + +   +  F        I +              
Sbjct: 413 IGSDENWNLAEKALRDILEARAPGKYFVEEGDAAFYGPKVDFIIRD-------------- 458

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGA 321
                          R  + G +      ++LP      F   + +    V +     G+
Sbjct: 459 ------------CLGREWQGGTV---QLDFNLPERFDLEFVDENNQRQRPVMIHRAVFGS 503

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++     G   +W    AP ++ ++ I        D    + A L K G  V  
Sbjct: 504 FERFFGLMVEEFGGAFPLW---CAPVQVRVLPI---SDPYLDYARTVVAALRKQGLRVEL 557

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASH 440
           DD  + +G +         P  V+VG    +D+ V ++    G   ++ + + +I     
Sbjct: 558 DDGRDTLGKKIRNGKTQKVPYLVVVGENEATDNTVTVESYFDGRLGEVKTTDALIERMRD 617

Query: 441 RFSNN 445
                
Sbjct: 618 EIDRK 622


>gi|28493150|ref|NP_787311.1| prolyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|81839144|sp|Q83GR4|SYP_TROWT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28476190|gb|AAO44280.1| prolyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 613

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 134/232 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +     +E+P   E   +  +LR G I Q   GI+SW+PLG K    +  IIR E 
Sbjct: 4   KVSGFLFRTFREDPATTESRGYGFLLRAGYIRQTGSGIFSWMPLGLKVRHKIENIIRYEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  AIE+  P L SADL+ +SGR+  YG ++ RL DR     +  PTHEE  T + +  
Sbjct: 64  GQVNAIEVLFPALFSADLFKQSGRWSEYGDDIFRLKDRRQGDYLLAPTHEEAFTQMMKEI 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+LP T YQIQ K+RDELRPR G++RSREF MKDAYSFDL  +G + SY     +Y
Sbjct: 124 CTSYRDLPRTVYQIQDKYRDELRPRAGLLRSREFSMKDAYSFDLDEKGLRQSYEAQKRAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +IF RL +  + ++A +G +GG +S EF+   + G+     + D   F   
Sbjct: 184 KKIFDRLKIDYVIVKANAGAMGGSVSEEFLHPTEMGDDTFVVTADGSAFNAE 235



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 8/173 (4%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D          RGIE+GH+F  G KYS  +       DG +  V MGSYGIG  R+ A 
Sbjct: 419 GDKSEWGPVTVKRGIEIGHLFQLGLKYSNALGLKVLDKDGYNKAVFMGSYGIGVSRLFAL 478

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           + E + D +G+ WP  +APF + ++ + +          ++   L+  G DV  DD    
Sbjct: 479 IAEKNCDERGLKWPAVLAPFDLHVVLLSSARA-------ELIDSLTDCGLDVLVDDRRVS 531

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            G +F  A L+G P  +++G K   +  VE+  R    R  + L+E+I     
Sbjct: 532 PGVKFTDAQLIGVPKIIVIGDKTRGED-VEVWDRANDQRTVLPLKEMIQGVIQ 583


>gi|147918785|ref|YP_687490.1| prolyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121690208|sp|Q0W0C9|SYP_UNCMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110622886|emb|CAJ38164.1| prolyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 474

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 165/436 (37%), Gaps = 71/436 (16%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
           ++L++   +  +    KG+Y W P G      V  ++R   +     E   P L    +L
Sbjct: 19  NELLMTAQIMDVRYPIKGVYVWYPFGFSIRKKVYNMLRNLLDV-DHQETYFPMLIPKPEL 77

Query: 80  WVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             ES     +  E+  +        +  +   PT E  +  +++  I+S+ +LP   YQI
Sbjct: 78  LKESEHIKGFEDEVYWVTHGGLSELEVPLALRPTSETAIYPMYKLWIRSHADLPLKLYQI 137

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              FR E +    ++R R     +  SF                                
Sbjct: 138 VNTFRYETKHTRPLIRLR-----EITSF-------------------------------- 160

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                      +H      D  E QV               ++F   +++  IV +    
Sbjct: 161 ---------KEAHTAHATWDDAEKQV--------HEAMDLYSEFFTKLAVPFIVHKRPEW 203

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                  +       +P+ K      ++VG + + GTK++     T++   G+  YV   
Sbjct: 204 DKFPGADYTMAFDTMMPDGK-----SLQVGTVHHLGTKFAKTYDITYEDEKGERQYVNQT 258

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLS 373
            YGI + R +AAVI    D KG++ P + +  ++ +I I  K  D   ++AC+K+   L 
Sbjct: 259 CYGI-SERCIAAVIGIHGDNKGLVLPPNASQTQVVIIPIIFKKDDGGVKEACQKVKELLR 317

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                   DD  E+ G+++   ++ G P ++ +G + + ++ V +  R  G +E + ++ 
Sbjct: 318 ANDIVAVIDDADERPGAKYYKWEMKGTPFRIEIGPRDIKNNSVMLVRRD-GKKESIPMDG 376

Query: 434 VINYASHRFSNNRPVL 449
           +     ++    +  L
Sbjct: 377 LPETVRNKLFEFQTDL 392


>gi|152974217|ref|YP_001373734.1| prolyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152022969|gb|ABS20739.1| prolyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 476

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 161/442 (36%), Gaps = 77/442 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENIQKVLDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             +G   + +P     +L   E    + +  ++  +    D+ +       PT E +  +
Sbjct: 61  KASGHENVYMPMFIPENLLQKEKDHVEGFAPKVAWVTHGGDEKLGERLCVRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E +     +R+ EFL ++ ++     E ++ S   
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIH---ETAEES--- 173

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                     R  L  + + A                        FC +      I  + 
Sbjct: 174 ---------QRETLNILNVYAS-----------------------FCEEYLAIPVIKGKK 201

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T+ +      +     +                          + ++ G    FGT +S 
Sbjct: 202 TEKEKFAGAKATYTIESL---------------------MHDGKALQTGTSHNFGTNFSE 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                +   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 241 AFEIKYLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVIPPKVAPVQVMIVPIAQ 299

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +   ++  R+ +V   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 300 HKEGILEKVAELKERIQQV-ARVRIDASSKTPGWKFNEYEMKGVPIRLEVGPKDIEKNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            +  R T  +E +S++++    
Sbjct: 359 VLVRRDTKEKECVSMDQLEERI 380


>gi|332799217|ref|YP_004460716.1| Prolyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696952|gb|AEE91409.1| Prolyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 478

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 162/452 (35%), Gaps = 83/452 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ ++ +    AE+A +  +    +I           P G    +N+  ++ +   
Sbjct: 16  FSQWYVDVILK----AELADYSPVRGCMVIR----------PYGYALWENIQQLLDDRFK 61

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDI 117
            TG      P      L   E+   + +  E+  +    ++ +       PT E ++ ++
Sbjct: 62  ATGHKNAYFPLFIPESLLQKEAEHVEGFAPEVAWVTHGGNEKLAERLAVRPTSETIICNM 121

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   IKS+R+LP    Q     R E       +R+ EFL ++ ++   T E ++    +M
Sbjct: 122 YSKWIKSWRDLPVLINQWCNVVRWEKS-TKPFLRTAEFLWQEGHTAHRTKEDAEEEALRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++       +        I G+ S          E     SK +    +     
Sbjct: 181 ----LEVYR----DFVETDLALPVIKGEKSD--------NEKFAGASKTYTIEAL----- 219

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                                                     R ++ G     G  ++  
Sbjct: 220 --------------------------------------MSDGRALQAGTSHNLGQHFAKA 241

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              TF   DG+  YV   S+GI   R++ A++    D +G+  P ++AP +  ++ I   
Sbjct: 242 YDITFLDQDGQLKYVWQTSWGIT-TRLIGAIVMVHGDDRGLKIPPTIAPIQAVIVPIFGR 300

Query: 358 D-QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             ++  +   +I+ +L      +  DD  E   G +F   ++ G P+++ +G K +   +
Sbjct: 301 QTELVLNKTNEIFTKLKSE-VRIELDDRDEYTPGWKFNEWEMRGVPVRIEIGPKDIQRQQ 359

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           V +  R TG +  +S  E++          + 
Sbjct: 360 VVLVRRDTGEKFTVSESELLPRLKTLLDEIQE 391


>gi|293401596|ref|ZP_06645738.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304854|gb|EFE46101.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 563

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/228 (42%), Positives = 139/228 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F   ++EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSFFYTIRENAKDEDSVSGNLLVRAGMIKKSSSGIYMIMPMGKRVLQKIETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +P L   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDATGAQELLMPVLIPEEVYEKSGRREAFGANMFALKDRYQKRYVMGPTHEELFTIAATM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+  E    SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDVDEESMHVSYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y +I  RLGL    ++A++G +GG LS EF  +   GE  V   +   
Sbjct: 181 YKKIMERLGLTYKIVKADTGAMGGSLSEEFQAITPIGEDVVVGCEHCN 228



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 1/169 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E     +  ++   A+GIEVG+ F  GTKY+  +   ++    K H VQMG YG G  R 
Sbjct: 386 EGDICPVCGHRLTFAKGIEVGNTFKLGTKYAESLGLEYQDETNKLHPVQMGCYGFGLGRA 445

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +AA++E  +D  GIIWP SVAP++++++ +   D+        +Y  LS  G DV  DD 
Sbjct: 446 MAAIVEQHNDASGIIWPASVAPYQVAIVVVAIKDEEQMRVATALYEELSAAGIDVVLDDR 505

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            E+ G +F   +L+G P ++ VG +   D KVE + R     E+  + E
Sbjct: 506 KERPGVKFKDMELIGIPYRITVG-RGAVDGKVEFRARTASENEEWLISE 553


>gi|261367962|ref|ZP_05980845.1| proline--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282569944|gb|EFB75479.1| proline--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 479

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 152/422 (36%), Gaps = 68/422 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           +  ++   S KG     P G    +N+   +      TG   +++P L    L  + G  
Sbjct: 29  KAELVEYSSVKGFVVLRPYGYAIWENIQKNLDARFKATGHENVAMPMLMPESLLKKEGEL 88

Query: 87  -DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +     +  ++ +   PT E +  D F   + SYR+LP  + Q     R 
Sbjct: 89  VNGFAPEVAWVTMGGSEPLEERLAVRPTSETLFCDHFSHVLHSYRDLPMLYNQWCSVVRW 148

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E   R   +R+REF  ++                                          
Sbjct: 149 EKSTR-PFLRTREFWWQEG----------------------------------------- 166

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                      + +T E     ++  ++        D    +      ++     A  + 
Sbjct: 167 ---------HTIHETAEEAKAETEQQLNCYADFCENDLCIPVIKGRKTDKEKFAGAEATY 217

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                + D          + ++ G   YFG K+S     TF G D    Y    S+G  +
Sbjct: 218 TIEAMMKDG---------KALQSGTSHYFGDKFSRAYDVTFTGRDNTLQYPFQTSWG-AS 267

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+I +  D  G+I P ++AP ++ ++ + AH     +   ++ A + K    V  
Sbjct: 268 SRLIGAIIMTHGDDDGLILPPAIAPVQVVIVPVAAHKPGVLEKSRELAAEIGKY-ARVKL 326

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +Q G +FA  ++ G P+++ VG + +   +  +  R T  ++ +  E++ +     
Sbjct: 327 DDSDKQPGWKFAQWEMKGVPIRLEVGPRDIEQGQCVLVRRDTREKQFVKFEDLASAIPAA 386

Query: 442 FS 443
             
Sbjct: 387 LE 388


>gi|19074578|ref|NP_586084.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74697534|sp|Q8SRH2|SYTC_ENCCU RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19069220|emb|CAD25688.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 640

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 156/442 (35%), Gaps = 48/442 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y     +   RD      +L L      ++S G   +LP G    + +   +REE  
Sbjct: 227 MDEYLKRKEEAKERDHRKIGTELDLF--FFSKYSPGSCFFLPNGTTMYNTLIEFLREEYR 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P +    LW ESG   +Y + M  +           P +      +FR   
Sbjct: 285 KRGFKEVITPNIFCTQLWEESGHLQNYKENMFII---EGDTFALKPMNCPGHCVMFRHQD 341

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            S+R+LP       +  R+EL     G+ R R F   DA+ F  T +  K          
Sbjct: 342 HSFRDLPLRLADFGVLHRNELSGTLTGLTRVRRFQQDDAHIF-CTKDQVKEEIKGCLEFL 400

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +   +   + P     S +    A+          +        +      
Sbjct: 401 SFVYGVFGFRFELV-LSTRPEKYLGSVDEWDRAEKALADAMDESNMPFKINAGDG----- 454

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  L D+L    + +   ++    F    ++       
Sbjct: 455 ---------------AFYGPKIDITLHDALGRRIQCATIQLD----FQLPQRF----ELK 491

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++ +DG+    V +    +G++  + A+I  S    G   P  ++P +I+++N+      
Sbjct: 492 YRDSDGQCRTPVIIHRAILGSIERMIAIILESF---GKRLPFWISPRQIAIVNMGN---- 544

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK- 419
             D   K+ + L++   DV  D  G  +  +   A+  G+ L  +VG K    +++ I+ 
Sbjct: 545 -PDYVGKVRSVLARFRLDVIDD--GNTLSKRIRTAETSGYALVCVVGKKEAEANEINIRF 601

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           ++         L ++++  +  
Sbjct: 602 NKSNRNIGLYELRDILDRMADE 623


>gi|307353929|ref|YP_003894980.1| prolyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157162|gb|ADN36542.1| prolyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 477

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 145/426 (34%), Gaps = 71/426 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G         I+RE  +     E   P L    +   E+     + 
Sbjct: 30  VRYPVKGLYVWFPHGFAIRKATYGILRELLD-RDHEETLFPLLIPEYEFMKEAEHIKGFE 88

Query: 91  KEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +E+  +      + D  +   PT E  +  ++   ++S+ +LP   YQI   FR E +  
Sbjct: 89  EEVYWVTNGGLSKLDVPLALRPTSETAIYPMYALWVRSHADLPIKLYQIVNTFRYETKHT 148

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++   T E +K          + ++                    
Sbjct: 149 RPLIRLREITSFKEAHTVHATWEEAKEQV----EDAIALYKEF----------------- 187

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                 V        V  SK       P  +                             
Sbjct: 188 -YERLCVP-------VIMSKRPDWDKFPGADYTIAADAV--------------------- 218

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         R ++VG   + G  ++      ++  +G+  Y     YGI + R +
Sbjct: 219 ----------MPDGRTLQVGTAHHLGDNFAKTFEICYEDENGEQQYAFQTCYGI-SERCI 267

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDD 383
           AA+I    D KG++ P  +AP ++ ++ I      +    A + I A +   G  V  DD
Sbjct: 268 AALISIHGDDKGLVLPPEIAPVQVVIVPIIMKKMAEEVTQAAKDIEAEMKAAGLRVKIDD 327

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              + G+++   ++ G PL++ +G + + +  V    R  G +  +  E +         
Sbjct: 328 RPLRPGAKYYHWEMRGTPLRLEIGPRDLENGVVMAADRF-GEKTSIPRENLKEGVRAFMD 386

Query: 444 NNRPVL 449
             +  L
Sbjct: 387 QFKEQL 392


>gi|260757797|ref|ZP_05870145.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|260668115|gb|EEX55055.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 232

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 156/231 (67%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           ++LA+TGE+QV+C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  
Sbjct: 1   MILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAK 60

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +    +VSARGIEVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE
Sbjct: 61  VKPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIE 120

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD  GIIWP ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G+
Sbjct: 121 ASHDDAGIIWPKTIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGA 180

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +FA  DL+G P QVIVG + V+  +VE+K R TG R+ + ++  IN  + +
Sbjct: 181 KFATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQSLGIKAAINMLTAQ 231


>gi|309800860|ref|ZP_07694992.1| threonine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|308222396|gb|EFO78676.1| threonine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 677

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 146/450 (32%), Gaps = 52/450 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNIIKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELKNLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                              +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------GLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +           ++  A L +       D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA---DEFAPHLQRFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + ++++ V  + R       + ++E  N  
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPVDEAKNQI 655


>gi|269986430|gb|EEZ92716.1| threonyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 635

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 153/445 (34%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E    D +    +L L        S G   +   G    + +    +E   +
Sbjct: 220 EEYLKLIEERKEHDHKKIGKELELFE--FSDLSPGSPFFTTKGTIIYNELLKFAKELDKK 277

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
               E+  P +   DLW  SG +D Y + M R+    +D+     P +      +F+S  
Sbjct: 278 YDYTEIITPIIAKIDLWKISGHFDKYKENMFRVTPFESDEEYGLKPMNCPFSALLFKSKT 337

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP          R EL     G++R+R     D++ + +T E  +    +MF   
Sbjct: 338 RSYRDLPMRLSDYGFLHRYELEGTLDGLLRTRLMEQNDSHVY-VTEEQIESEIIRMFNIL 396

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +     K I + A + P            A+         K +       +   +  
Sbjct: 397 DDTYKPFNFKPIMVLA-TRPEKRIGEEALWDKAEGILKGALDKKGYKYEIKEGDGAFYGP 455

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I +  +        A                          +   F    ++     A 
Sbjct: 456 KIDIYVLDFSGRVEDAYAVST---------------------IQLDFNLAVRF----DAK 490

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D K+H  + +    +G +     +I  +  G+  +W   +AP ++ ++ I    + 
Sbjct: 491 YIGKDNKEHFPIVIHRSIMGTIGRFMGIILENLKGELPVW---LAPVQVKVLTIT---ER 544

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  E I  +L         D     +  +   A L   P  +++G K      + +++
Sbjct: 545 NNEYAEGIIKKLKDNNIREESDIENGTLDYKIRKAQLEKIPFIIVIGDKEEEKKTIAVRN 604

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R    R ++ ++E I    +  +N 
Sbjct: 605 RKGKTRYNVDIDEFIKNLLNDINNK 629


>gi|146319615|ref|YP_001199327.1| prolyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146321813|ref|YP_001201524.1| prolyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253752613|ref|YP_003025754.1| prolyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253754439|ref|YP_003027580.1| prolyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|253756372|ref|YP_003029512.1| prolyl-tRNA synthetase [Streptococcus suis BM407]
 gi|166980162|sp|A4W435|SYP_STRS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980163|sp|A4VXT8|SYP_STRSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145690421|gb|ABP90927.1| Prolyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145692619|gb|ABP93124.1| Prolyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251816902|emb|CAZ52551.1| prolyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251818836|emb|CAZ56679.1| prolyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251820685|emb|CAR47447.1| prolyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292559230|gb|ADE32231.1| Prolyl-tRNA synthetase [Streptococcus suis GZ1]
          Length = 620

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 135/215 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL+   +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 14/183 (7%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+
Sbjct: 432 PDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVL 491

Query: 330 ESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           E                   GI +P  +APF + LI +   D+   +  + I A L   G
Sbjct: 492 EQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAG 551

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K + TG   ++ +++++ 
Sbjct: 552 YEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLLE 610

Query: 437 YAS 439
              
Sbjct: 611 TLQ 613


>gi|45358259|ref|NP_987816.1| prolyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|74579597|sp|Q6LZD3|SYP_METMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|44921016|emb|CAF30252.1| Prolyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 460

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 164/459 (35%), Gaps = 87/459 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEV 113
           +  + TG  E   P L   +L  + G     +  E+  +        +  +   PT E  
Sbjct: 46  KLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRPTSETT 105

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKH 172
           M  + +  IK + +LP   YQ+   FR E +    ++R RE +  K+A++   T +    
Sbjct: 106 MYYMMKQWIKVHTDLPLKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHATKKECDA 165

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +    Y   F  +G   +P      P                         +  FP 
Sbjct: 166 QIEEALTLYKAFFDEIG---VPYVISKRPE------------------------WDKFPG 198

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                 FD I                                     + +++G +   G 
Sbjct: 199 ADYTMAFDTIYPDG---------------------------------KTMQIGTVHNLGQ 225

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++      F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI
Sbjct: 226 NFAKTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLI 284

Query: 353 NI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  K  +++  D  +++   L      V  DD   + G ++   +L G PL++ +G + 
Sbjct: 285 PLLFKGKEEIVMDKIKELNNTLKSE-FRVHLDDRDIRPGRKYNDWELKGVPLRIELGPRD 343

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + +    I  R TG +  +    ++       S  +  L
Sbjct: 344 IENGHALIVRRDTGEKITVEYSNILEEVEKIVSMYKENL 382


>gi|302024530|ref|ZP_07249741.1| prolyl-tRNA synthetase [Streptococcus suis 05HAS68]
          Length = 620

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 135/215 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL+   +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 14/183 (7%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+
Sbjct: 432 PDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVL 491

Query: 330 ESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           E                   GI +P  +APF + LI +   D+   +  + I A L   G
Sbjct: 492 EQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAG 551

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K + TG   ++ +++++ 
Sbjct: 552 YEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLLE 610

Query: 437 YAS 439
              
Sbjct: 611 TLQ 613


>gi|283456070|ref|YP_003360634.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283102704|gb|ADB09810.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 677

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 58/453 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNIIKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELKNLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                              +       A      + +  D++    +VS   ++    F 
Sbjct: 476 ----------------GLELVDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLD----FN 515

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +  ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 516 LPERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           +  + +        +    +    A L +       D   ++ G +   A     P  +I
Sbjct: 569 VLGVPV------ADEFAPHLQRFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILI 622

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           VG + ++++ V  + R       + ++E  N  
Sbjct: 623 VGEEDMNNNAVSFRFRDGSQLNGVPVDEAKNQI 655


>gi|167756667|ref|ZP_02428794.1| hypothetical protein CLORAM_02205 [Clostridium ramosum DSM 1402]
 gi|167702842|gb|EDS17421.1| hypothetical protein CLORAM_02205 [Clostridium ramosum DSM 1402]
          Length = 479

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 153/423 (36%), Gaps = 68/423 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
            +  ++   S KG   + P      + +   + +    TG   + +P L    L   ES 
Sbjct: 26  RKAELMDYSSVKGFIIYRPYSYAMWEAIQQYMDKRFKETGHENVYMPMLIPQSLLQKESD 85

Query: 85  RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E   +     D  ++ +I  PT E +  + +   + SYR+LP  + Q     R
Sbjct: 86  HVEGFAPECAIVTKGGLDDLEENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVR 145

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +     +R  EFL ++ ++   +   ++    +M   Y        L +IPM     
Sbjct: 146 WE-KTTRPFLRGSEFLWQEGHTVHASETEARAETLQMLEIYEDTAK--NLLAIPMLT--- 199

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             G     E    A+  ET    +       + S  + +                     
Sbjct: 200 --GRKTEREKFAGAE--ETYTIEALMHDGKALQSGTSHY--------------------- 234

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                                        FG  ++      F   + K  YV   S+G+ 
Sbjct: 235 -----------------------------FGQGFAKAFDMKFLSKENKLEYVYQTSWGV- 264

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R++ A+I    D  G++ P  VAP ++ +I I+       D   +I  +L + G  V 
Sbjct: 265 STRLLGAIIMVHGDNNGLVLPPRVAPTQVMIIPIQQQKAGVLDKAYEIEKQLKEAGIRVK 324

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYAS 439
            D   +  G +F+ A++ G PL++ +G K + ++   I  R  G +E  +L+ E+IN   
Sbjct: 325 VDASDKSPGWKFSEAEMRGVPLRLEIGPKDIENNACVIAKRNDGTKEKYALDQELINTIE 384

Query: 440 HRF 442
              
Sbjct: 385 TLL 387


>gi|223933900|ref|ZP_03625863.1| prolyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897426|gb|EEF63824.1| prolyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 620

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 135/215 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF R GL+   +  + G +GG  S EF+ +  
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITP 215



 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 14/183 (7%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+
Sbjct: 432 PDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVL 491

Query: 330 ESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           E                   GI +P  +APF + LI +   D+   +  + I A L   G
Sbjct: 492 EQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAG 551

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K + TG   ++ +++++ 
Sbjct: 552 YEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLLE 610

Query: 437 YAS 439
              
Sbjct: 611 TLQ 613


>gi|228472897|ref|ZP_04057654.1| proline--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275479|gb|EEK14256.1| proline--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 492

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 162/452 (35%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++ G+      +G     P G    + +  I+ +    TG      P       + 
Sbjct: 17  NELVVKAGLAENSGVRGCMVIKPYGYAIWEKMKDILDKMFKDTGHQNAYFPIFVPKSYFE 76

Query: 82  -ESGRYDSYGKE-------------------MLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE                   M+    + ++ +I  PT E ++ + +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDPNQKGKLMVDPEAKLEEELIVRPTSEAIIWNTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E +     KM   Y
Sbjct: 137 IQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATREEAVEEAQKMNDVY 195

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                                   F  K      I    T+ + 
Sbjct: 196 --------------------------------------ATFVEKYMGVPVIRGHKTESER 217

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +                                 + ++ G   + G  ++      
Sbjct: 218 FAGADDTYCIEAL---------------------MQDGKALQAGTSHFLGQNFAKAFEVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +G   YV   S+G+ + R++ A+I S  D  G++ P  +AP ++ ++ I   ++  
Sbjct: 257 FANKEGVLDYVWASSWGV-STRLMGALIMSHSDDNGLVLPPLLAPIQVVIVPIYKGEEQL 315

Query: 362 RDACEK---IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   E+   +   L +    V +DD   ++ G +F   +L G P+++ +G + + ++  E
Sbjct: 316 QAIRERITPLMKALKERNISVKFDDDDTQKPGFKFHEYELKGVPVRLAIGQRDLENNTYE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E +S + +I +      + +  +
Sbjct: 376 VSRRDTLTKESVSGDNIIAHIEELLKDIQENI 407


>gi|300727040|ref|ZP_07060459.1| proline--tRNA ligase [Prevotella bryantii B14]
 gi|299775584|gb|EFI72175.1| proline--tRNA ligase [Prevotella bryantii B14]
          Length = 493

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 167/446 (37%), Gaps = 85/446 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+ +  ++ Q   +G     P G    + +   + +     G      P L        E
Sbjct: 22  LVTKADLVEQAPVRGCMIIKPYGFAIWEKMKEQLDKMFKTKGVQNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEM-----LRLADRND-------------KAMIYGPTHEEVMTDIFRSHIKS 124
           +     + KE       RL    D             + +I  PT E ++ + +++ I S
Sbjct: 82  AEHVKGFAKECAVVTHYRLKSSEDGNSVEVDSEAKLEEELIIRPTSETIIWNTYKNWIHS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    KM    L  
Sbjct: 142 WRDLPIKCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATREEAE----KMAQDML-- 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                      V AD  E      K      I    ++ +    
Sbjct: 195 --------------------------HVYADFAE------KYMAVPVIQGVKSETERFAG 222

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                              + ++ G   + G  ++     T+  
Sbjct: 223 ALDTYTIEAM---------------------MQDGKALQSGTSHFLGQNFAKSFDVTYLT 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I  +D+     
Sbjct: 262 KENKPEYVWATSWGV-STRLMGALIMTHSDDNGLVLPPKLAPVQVVIIPIYKNDEQHEQL 320

Query: 365 CEKIY---ARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +K+     +L+++G  V +DD   ++ G ++A  +L G P+++++G + + ++ +E+  
Sbjct: 321 NQKLQPVIDQLTELGVSVKYDDADNKRPGFKYADYELKGVPVRLVMGGRDLENNTIEVMR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R T  +E+++ + ++    +   + +
Sbjct: 381 RDTLEKENVTFDGIVERIKNLLDDIQ 406


>gi|212715814|ref|ZP_03323942.1| hypothetical protein BIFCAT_00715 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661181|gb|EEB21756.1| hypothetical protein BIFCAT_00715 [Bifidobacterium catenulatum DSM
           16992]
          Length = 677

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 144/446 (32%), Gaps = 52/446 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM---LRLADRNDK---------AMIYGPTHE 111
                +  P +    L+  SG    Y   M   +RL +  D+              P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNVIKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIY-CTREQM 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           K     +    L +    GL    +   +  P     S E    A     +V        
Sbjct: 420 KDELKNLLTFVLGLLKDFGLDDFYLELSTKDPHKYVGSDEIWEEATNTLAEVAKES---- 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                              +       A      + +  D++    +VS   ++      
Sbjct: 476 ----------------GLELIDDPCGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPER 519

Query: 290 FGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           FG +Y          ADG     V +     G++    AV+   + G    W   +AP +
Sbjct: 520 FGLEY--------IAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAW---LAPVQ 568

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  + +           ++  A L +       D   ++ G +   A     P  +IVG 
Sbjct: 569 VLGVPVA---DEFAPHLQQFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGE 625

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEV 434
           + ++++ V  + R       +  +E 
Sbjct: 626 EDMNNNAVSFRFRDGSQLNGVPTDEA 651


>gi|229820470|ref|YP_002881996.1| threonyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566383|gb|ACQ80234.1| threonyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 671

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/438 (14%), Positives = 131/438 (29%), Gaps = 54/438 (12%)

Query: 13  ENPRDAEIASHKLML-RTGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E   +AE   H+ +     +     +   G+  + P G      +    R      G   
Sbjct: 252 ERLAEAERRDHRRLGSELDLFSVPEEIGSGLAVFHPKGSVIRMEMEDYSRRRHVEAGYDF 311

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTD 116
              P +  A L+  S   + Y   M                 R  +     P +  +   
Sbjct: 312 AYTPHITKAHLFETSRHLEWYADGMYPPMQLDAEHHEDGTLKREGQDYYLKPMNCPMHNL 371

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E  +    
Sbjct: 372 VFAARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIY-CTREQMRDELA 430

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    L +    GL+   +   +  P            A      V  +        P 
Sbjct: 431 SLLTFVLDLLRDYGLEEFYLELSTRDPEKSVGDDATWDEATATLRDVATASGLELVDDPG 490

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + +  D++  + ++S   ++    F  G   
Sbjct: 491 --------------------GAAFYGPKISVQARDAIGRSWQLSTIQLDF---FEPGL-- 525

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +  +DG +   V +     G++    A++   + G     P  +AP ++  + 
Sbjct: 526 ---FDLEYTASDGSRQQPVMIHRALFGSIERFFAILLEHYAGAM---PPWLAPVQVRAVP 579

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +        + A+L         DD  ++   +   A     P  +I G +    
Sbjct: 580 VA---EPFNAYLADVVAQLRAASVRAELDDGDDRFNKKIRTATTQKIPFVLIAGGEDAEA 636

Query: 414 SKVEIKHRLTGIREDMSL 431
             V  ++R    R  + +
Sbjct: 637 GAVSFRYRDGTQRNGVPV 654


>gi|193216362|ref|YP_001997561.1| prolyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|259511584|sp|B3QYP1|SYP_CHLT3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193089839|gb|ACF15114.1| prolyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 481

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 158/454 (34%), Gaps = 83/454 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ I+    R A++A +  +    +I           P G    + + A +      
Sbjct: 13  SQWYIDIV----RFAKLADYSDVRGCMVIR----------PNGYAIWEKMQAALDRMFKE 58

Query: 64  TGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPLFIPESFIQKEAEHIEGFAPECAVVTHGGGEELQEKLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T   +K    +M 
Sbjct: 119 KKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATETEAKEEVLRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++     + + +    G                 E++ F                
Sbjct: 178 E----VYRHFAEEYMAIPVIVGM--------------KTESEKFAGAHETF--------- 210

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                             E      + ++ G   + G  ++   
Sbjct: 211 --------------------------------CIEAMMQDGKALQAGTSHHLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DG   YV   S+G+ + R++ A+I +  D KG++ P  +A  +  ++ I K  
Sbjct: 239 DCKFQTKDGSLEYVWASSWGV-STRLIGALIMAHSDDKGLVLPPKLASRQAVIVPILKGD 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +   ++   L   G  VF DD  +   G +FA  +L G P+++ +G + V+  K 
Sbjct: 298 KAAVLEKAVELEKMLKAAGVQVFLDDSEQNTPGWKFAEYELQGIPVRIELGPRDVAAGKC 357

Query: 417 EIKHRLTGIREDMSLE-EVINYASHRFSNNRPVL 449
            +  R T  +E + ++            + +  L
Sbjct: 358 VVARRDTSEKETLEIDTAFPQKIKDLLDSIQTGL 391


>gi|254730107|ref|ZP_05188685.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 232

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 111/230 (48%), Positives = 155/230 (67%)

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +LA+TGE+QV+C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  +
Sbjct: 2   ILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAKV 61

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
               +VSARGIEVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE+
Sbjct: 62  KPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIEA 121

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           SHD  GIIWP ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G++
Sbjct: 122 SHDDAGIIWPKTIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGAK 181

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           FA  DL+G P QVIVG + V+  +VE+K R TG R+ + ++  IN  + +
Sbjct: 182 FATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQSLGIKAAINMLTAQ 231


>gi|254171909|ref|ZP_04878585.1| prolyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033805|gb|EEB74631.1| prolyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 483

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/429 (20%), Positives = 154/429 (35%), Gaps = 69/429 (16%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
           ++L+   G+I      KG+  WLP G K + N+ A IR E  RTG  E+  P L    + 
Sbjct: 18  NELLETAGIIDKRYPVKGMNVWLPYGLKIMRNIEAFIRAEMERTGHEEVLFPALIPETEF 77

Query: 80  WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     +  E+  +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI
Sbjct: 78  QKEAEHIKGFEDEVYWVTHAGLDPLDVRLILRPTSETAMYSMFSLWIRSHADLPFKVYQI 137

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              +R E +    ++R RE        F+     +         +  +I   L +     
Sbjct: 138 VNVYRYETKHTRPLIRVREISR----FFEAHTAHADFE-----DAERQIKEDLEIFDRLA 188

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P                      SK       P                      
Sbjct: 189 KFLALP-------------------YIISKRPDWDKFPGAFYSLGA-------------- 215

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                            E      R +++G +  +   ++   +  ++   G   Y    
Sbjct: 216 -----------------EIMMPDGRTLQIGTMHNYKQNFAKAYNIQYETETGDHEYAHQT 258

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLS 373
           ++G+ + R++AAVI    D  G++ P ++AP ++ ++ I   D          +I   L 
Sbjct: 259 TFGM-SERLLAAVIAVHGDDSGMVLPPTIAPIQVVIVPIPKKDANVDVFAYAREIAEELR 317

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K G  V  D+   + G ++   +L G PL++ VG + V   K  +  R T  +  +  + 
Sbjct: 318 KAGFRVHVDERDIRPGRKYYDWELKGVPLRIEVGPRDVEGRKAVLARRDTFEKVTVERDA 377

Query: 434 VINYASHRF 442
           ++       
Sbjct: 378 IVEEVKKTL 386


>gi|320100286|ref|YP_004175878.1| prolyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319752638|gb|ADV64396.1| prolyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 480

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 163/428 (38%), Gaps = 71/428 (16%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H ++   G+I      KG+  W+P G KAL     I+ +    TG  E   PT+    ++
Sbjct: 20  HSVLKEAGIIDIRYPVKGMNVWMPYGLKALRLTQRILMDLLEETGHQEAYFPTMVPESVF 79

Query: 81  -VESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E      +G E       +  + ++ +   PT E VM  ++   IK  ++LP   YQ+
Sbjct: 80  SREKDFLKGFGGETFVVEGTVTRKFNERLFVRPTSETVMYYMWNMWIKGRKDLPLKMYQV 139

Query: 136 QLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E +    ++R RE +   +A++   T E ++   ++    Y   F+RL L    
Sbjct: 140 VNVFRYETKMTHPILRVREIMGFIEAHTAHATMEEAEKQISEAIAIYKEFFNRLQLPY-- 197

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                          FIV     +T          F     N DF  +            
Sbjct: 198 ---------------FIVKTPPWDT----------FAGAEYNYDFITV------------ 220

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                                    +G+E+G +   G K++      +   DG + +V  
Sbjct: 221 ---------------------MPDGKGLELGSVINLGQKFAKAFEIKYMDTDGVEKHVYQ 259

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLS 373
             YG+ + RV+ AVI    D  G+ +P  +AP ++ ++ + K  +    +   K+   L 
Sbjct: 260 TCYGV-SERVLGAVIGIHGDETGLFFPPDIAPIQVVIVPVMKPGENQVLEYAFKVSNILK 318

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             G  VF D D     G ++   ++ G P ++ VG K +  S V I  R    +  + LE
Sbjct: 319 AHGVRVFVDTDQEHTPGWKYYYWEMKGVPTRIEVGRKELDASTVTIARRDKREKHVVKLE 378

Query: 433 EVINYASH 440
           E ++    
Sbjct: 379 EAVDLLRK 386


>gi|225573951|ref|ZP_03782596.1| hypothetical protein RUMHYD_02045 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038789|gb|EEG49035.1| hypothetical protein RUMHYD_02045 [Blautia hydrogenotrophica DSM
           10507]
          Length = 479

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 151/445 (33%), Gaps = 76/445 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             KG     P G    +N+   +     
Sbjct: 14  MEEDFAQWYTDVVKKAELVDYT----------SVKGCMVIKPAGYAIWENIQRELDRRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     +   + +   PT E +  D 
Sbjct: 64  ETGVENVYMPLFIPESLLQKEKDHVEGFAPEVAWVTHGGLEELQERLCVRPTSETLFCDF 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I S+R+LP  + Q     R E +     +RSREFL ++ ++   T E ++    +M
Sbjct: 124 YARDIHSHRDLPKVYNQWCSVVRWE-KTTRPFLRSREFLWQEGHTAHATAEEAEERTIQM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                             V AD  E ++          I    T
Sbjct: 183 LN--------------------------------VYADFCEEELAI------PVIKGRKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +      +     +                          + ++ G    FG  ++  
Sbjct: 205 DKEKFAGAEATYTIESL---------------------MHDGKALQSGTSHNFGDGFAKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   D    YV   S+G+   R++ A+I    D  G++ P  +AP +  +I I+  
Sbjct: 244 FGIQYADRDNTLKYVHQTSWGMT-TRMIGAIIMVHGDNSGLVLPPRIAPVQAMIIPIQQK 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +++ A + K G  V  DD  +  G +F+  ++ G P+++  G K + + +  
Sbjct: 303 KEGVLEKADEMMAAIKKAGIRVKVDDSDKSPGWKFSEQEMRGIPVRIECGPKDIENGQAV 362

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           I  R T  +  +S E++        
Sbjct: 363 IVRRDTREKIVVSFEDLAQKVQETL 387


>gi|149244270|ref|XP_001526678.1| threonyl-tRNA synthetase, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146449072|gb|EDK43328.1| threonyl-tRNA synthetase, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 486

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/473 (14%), Positives = 148/473 (31%), Gaps = 86/473 (18%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           + EI++ +L+  T +    S G   +LP G + L+ +   ++ +Q + G  E+  P +  
Sbjct: 41  NHEISTKQLLYTTDI---TSPGSIFFLPHGTRILNKLIQFMKNQQIKYGFHEVVTPLIFK 97

Query: 77  ADLWVESGRYDSYGKEMLRL-----------------------AD-----------RNDK 102
             LW +SG +D+Y  +M ++                        D             + 
Sbjct: 98  TKLWKKSGHWDNYKDDMFKVVGNDKSKEEVVVVLAPTVQSESLTDDGNDSALQEAFEEEH 157

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAY 161
                P +      IF    +SY  LP  +       R+E      G+ R R F   D +
Sbjct: 158 EYGLKPMNCPGHCMIFSKFERSYNELPIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGH 217

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F                     +   G+  I     + P                  + 
Sbjct: 218 IF-CDMSHIDQEIANTLNLIKDTYSIFGIDKIEYYLSTRP-----------------EEK 259

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           +  +         +     D  +     +      A      +  L D+  +  +V+   
Sbjct: 260 YIGEIETWDAAELKLKQVLDRSAGKGNWQVREGDGAFYGPKIDVLLTDAFGKKHQVATIQ 319

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           ++    F    ++       +   DG   +  + +     G++    A++   + GK   
Sbjct: 320 LD----FQLPKRF----DLKYISEDGSRNNQPILIHRAVFGSLERFFAILLDHYQGK--- 368

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYAR--------------LSKVGCDVFWDDMG 385
           WP  + P +  +I +    +      E++  +              L+     V  D   
Sbjct: 369 WPFWINPRQAIIIPVN---ETHTARAEELQRKLCGDIINTNDPVSPLTGYNFHVDVDKRP 425

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             IG +   A   G+   +I+G K +++    ++ R      +++ E++    
Sbjct: 426 ATIGMRTKDAIQKGYSYLIIIGDKDIANGTYAVRSRDDRTIYNLTGEDIYKKF 478


>gi|331087039|ref|ZP_08336114.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409489|gb|EGG88932.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 564

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 91/227 (40%), Positives = 135/227 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN ++ +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKEEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  I  R  L    ++A++G +GG LS EF  + D GE  +      
Sbjct: 181 YQNIMERCKLNYKIVKADTGAMGGSLSEEFQAITDIGEDVIVTCDGC 227



 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 3/183 (1%)

Query: 264 NEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                D  P   +     +GIEVG+ F  GTKY+  +   ++  D K H V+MG YG G 
Sbjct: 383 QVHEGDVCPVCGKPLKFCKGIEVGNTFKLGTKYAKTLGLEYQDVDNKLHPVEMGCYGFGL 442

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +AA++E  +D  GIIWP SVAPF+++++ + + D+       ++Y  L K G DV  
Sbjct: 443 ERCMAAIVEQHNDEAGIIWPASVAPFEVAVVVVSSKDEEQMRIGSELYEALKKEGIDVLL 502

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+ G +F   +L+G P ++ VG + + + KVE + R      +++L EVI      
Sbjct: 503 DDRKERPGVKFKDMELIGIPYRITVG-RGIQEGKVEFRARTAAENREIALGEVIKLVKEE 561

Query: 442 FSN 444
              
Sbjct: 562 LQK 564


>gi|124008543|ref|ZP_01693235.1| prolyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123985917|gb|EAY25774.1| prolyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 498

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 168/478 (35%), Gaps = 101/478 (21%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +RS+ +     E  + A++A +  +           G     P G    + + A I    
Sbjct: 7   KRSEDYSAWYNELVKKADLAENSDVR----------GCMVIKPYGFAIWEKMQAEIDRMF 56

Query: 62  NRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD------------------RNDK 102
             TG      P       L  E+   + + KE   +                    + ++
Sbjct: 57  KATGHSNAYFPLFIPKSYLSKEADHVEGFAKECAVVTHYRLKNAEDGSGVVVDPDAKLEE 116

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +I  PT E V+   ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++
Sbjct: 117 ELIVRPTSETVIWSSYKKWIQSYRDLPILLNQWANVVRWEMRTRI-FLRTSEFLWQEGHT 175

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              T E ++    +M    + ++       + +    G      S  F      G  + +
Sbjct: 176 AHATKEEAEAETIQM----MNVYAEFAENFMAVPVIKGI--KSESERF-----AGADETY 224

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           C +                                                      + +
Sbjct: 225 CIEAL------------------------------------------------MQDGKAL 236

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G   + G  ++      F   + K+  V   S+G+ + R++ A+I +  D  G++ P 
Sbjct: 237 QAGTSHFLGQNFAKAFDVKFLNKENKEELVWGTSWGV-STRLMGALIMAHSDDHGLVLPP 295

Query: 343 SVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLL 398
            +AP ++ ++ I   D+          +I   L  VG  V +D+    + G +FA  ++ 
Sbjct: 296 KLAPIQVVIVPIYKGDEQFAAVSAKANEIKKALEAVGVSVKYDNRDTYKPGFKFADWEMK 355

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRL-------TGIREDMSLEEVINYASHRFSNNRPVL 449
           G P+++ +G++ + +  VE+  R           ++ ++ +EV+        + +  +
Sbjct: 356 GVPVRLALGARDLENGTVEMARRDVVDPNNRNAGKKVVNFDEVVAEVQATLEDMQQGI 413


>gi|260590692|ref|ZP_05856150.1| proline--tRNA ligase [Prevotella veroralis F0319]
 gi|260537353|gb|EEX19970.1| proline--tRNA ligase [Prevotella veroralis F0319]
          Length = 493

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 171/463 (36%), Gaps = 88/463 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+   + AE  S     L+++  +  Q + +G     P G    + + A + +    TG 
Sbjct: 5   LKHMTKRAENYSQWYNDLVIKADLAEQSAVRGCMVIKPYGYAIWEKMQAQLDKMFKETGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    + ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKATDNGNAVEVDPNAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHAT- 182

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +    K   + L                             V AD  E  +      
Sbjct: 183 ---REEAEKEAQTML----------------------------HVYADFAEKWLAVPVVQ 211

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               + SE   F   +   +I                               + ++ G  
Sbjct: 212 G---VKSETERFAGALDTYTIEAM------------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKIAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++ ++ I   ++  ++   K+      L ++G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVVIVPIFKGEEQLKELTAKLQPVIDSLRELGITVKYDDTDNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +G + + ++ +E   R T  +E +S + ++        + +
Sbjct: 364 LAMGGRDLENNTIEFMRRDTLEKESVSFDGIVERVKALLDDIQ 406


>gi|319948489|ref|ZP_08022623.1| threonyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319437856|gb|EFV92842.1| threonyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 699

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 143/458 (31%), Gaps = 55/458 (12%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G   + P G    + +           G
Sbjct: 271 YLDRLAEAEKRDHRRLGTELDLFS-FPDEIGSGFPVFHPRGGIIRNEMEQHSLRRHLAAG 329

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RND---------KAMIYGPTHEEV 113
              ++ P +   DL+ +S     Y + M         +D         +     P +  +
Sbjct: 330 YSLVNTPHVTKGDLFRKSQHLSWYSEGMFPPMVLDAEHDADGNETKPGQDYYVKPMNCPM 389

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E  + 
Sbjct: 390 HNLVFDSRGRSYRELPLRMFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIY-CTEEQMEG 448

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
               +    + +    GL    +   +  P       E    A     +V  +      P
Sbjct: 449 EIASVLSFIISLLRDYGLDDFYLELSTKDPEKYVGGDELWERATETLRRVATNSGLELVP 508

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++        
Sbjct: 509 DPG--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD-------- 540

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             ++LP     T+  ADG K   V +     G++    AV+   + G    W   +AP +
Sbjct: 541 --FNLPELFDLTYNAADGTKKRPVMIHRALFGSIERFFAVLLEHYAGLFPAW---LAPVQ 595

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +  I +    +      E +   L   G     D   E++  +         P  ++ G 
Sbjct: 596 VVGIPVAEAHEKHL---EDVIDELRGRGIRAELDTSDERMQKKIRNHTTGKVPFMLLAGD 652

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + V    V  +         +S    ++  ++  ++ R
Sbjct: 653 RDVEAGAVSFRFPDGTQLNGVSRNAAMDKIAYWINSRR 690


>gi|297243465|ref|ZP_06927397.1| threonyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296888510|gb|EFH27250.1| threonyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 660

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 139/452 (30%), Gaps = 51/452 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      ++ L +    +   G+  + P G   ++ +    RE+  +     
Sbjct: 231 RMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREQHRKHHYSF 289

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 R        P +  +   
Sbjct: 290 VQTPHITKGGLYETSGHLQWYKDGMYPPMKLDEERDENGNVTRQGADYYLKPMNCPMHNL 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  +    
Sbjct: 350 IFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIY-CTREQMRDELK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    L +    GL    +   +        S E    A     +V           P 
Sbjct: 409 SLLNFVLGLLKDFGLNDFYLELSTKDEHKFVGSDEIWEEATNTLAEVAKESGLELVDDPG 468

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + +  D++    +VS   ++    F    ++
Sbjct: 469 --------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FNLPERF 504

Query: 295 SLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +  ADG     V +     G++    A++   + G    W   +AP +++ + 
Sbjct: 505 ----KLEYIAADGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAW---LAPVQVTGVP 557

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +           +K+ + L +       D+  ++ G +   A     P  +I G + V++
Sbjct: 558 VA---DEFAPHLQKLISDLEENMVRCEMDNSDDRFGKKIRNASKSKVPFTLIAGEEDVNN 614

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V  + R       + + +   +        
Sbjct: 615 NAVSFRFRDGSQLNGVPVSQAKEWILSIIKQR 646


>gi|303390083|ref|XP_003073273.1| threonyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302418|gb|ADM11913.1| threonyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
          Length = 646

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 151/425 (35%), Gaps = 47/425 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y     +   RD      +L L      ++S G   +LP G    + +   +REE  
Sbjct: 227 LQEYLKRKEEAMERDHRKIGTELDLF--FFSKYSPGSCFFLPNGAIMYNTLIEFLREEYR 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P +    LW ESG   +Y + M  +   N       P +      +F+   
Sbjct: 285 KRGFKEVITPNIFCTKLWEESGHLQNYKENMFLIEGDN---FALKPMNCPGHCVMFKHQD 341

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            S+R+LP       +  R+EL     G+ R R F   DA+ F  T +  K          
Sbjct: 342 HSFRDLPLRLADFGVLHRNELSGTLTGLTRVRRFQQDDAHIF-CTRDQVKGEIKGCLEFL 400

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G K   +   + P     S +    A+    +              +      
Sbjct: 401 SFVYGVFGFKFELV-LSTRPEKYLGSIDEWNNAEKVLAEAMDESGMSFKINEGDG----- 454

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      +  L D+L    + +   ++    F    ++       
Sbjct: 455 ---------------AFYGPKIDITLHDALGRKIQCATIQLD----FQLPQRF----ELK 491

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++ +DG+    V +    +G++  + A+I  S   K   W   ++P +I++IN+      
Sbjct: 492 YRDSDGQCKTPVIIHRAILGSIERMIAIILESFGKKLPFW---ISPRQIAIINMGN---- 544

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  EKI + LSK   DV  D  G  +  +   A+  G+ L  +VG K     ++ I+ 
Sbjct: 545 -LDYVEKIKSVLSKFRLDVIDD--GNTMNKRIRTAETCGYSLVCVVGEKEAKTDEINIRL 601

Query: 421 RLTGI 425
             +G 
Sbjct: 602 SKSGK 606


>gi|238922935|ref|YP_002936448.1| prolyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|259511596|sp|C4ZC24|SYP_EUBR3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238874607|gb|ACR74314.1| prolyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|291523823|emb|CBK89410.1| prolyl-tRNA synthetase, family I [Eubacterium rectale DSM 17629]
 gi|291528709|emb|CBK94295.1| prolyl-tRNA synthetase, family I [Eubacterium rectale M104/1]
          Length = 479

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 151/449 (33%), Gaps = 77/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             KG   + P G    +N+   +     
Sbjct: 14  MEEDFTQWYTDVVKKAELMDYS----------SVKGCMIFKPNGYAIWENIQKNLDAMFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     +   + +   PT E +  ++
Sbjct: 64  ETGVENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTQGGLETLQERLAVRPTSETLFCEL 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++S+R+LP  + Q     R E +     +RS EFL ++ ++   T E ++    +M
Sbjct: 124 FSKTVQSHRDLPKVYNQWCSVVRWE-KTTRPFLRSSEFLWQEGHTVHATAEEAEARTVQM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L I+                                    FC K      +    T
Sbjct: 183 ----LNIYAD----------------------------------FCEKYLAIPMVKGRKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +      +                                + ++ G    FG  +   
Sbjct: 205 DKEKFAGAEATYTIEAL---------------------MHDGKALQSGTSHNFGDGFPKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   D K  Y    S+G+ + R++ A+I    D  G++ P  +AP ++ +I I+  
Sbjct: 244 FGIQYTDKDNKLQYCHETSWGV-STRLIGAIIMVHGDDSGLVLPPKIAPTQVMVIPIQQQ 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D    +  +LSK    V  D   +  G +FA  ++ G   ++ +G K +  ++  
Sbjct: 303 KDGVLDKAYDLKDKLSK-DFRVKIDATDKTPGWKFAAQEVQGISTRIEIGPKDIEKNQCV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I  R T  +  +SL+EV    +      +
Sbjct: 362 IVRRDTREKIVVSLDEVNEKLAEVLETMQ 390


>gi|325663512|ref|ZP_08151922.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470411|gb|EGC73642.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 564

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/227 (40%), Positives = 135/227 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN ++ +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKEEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  I  R  L    ++A++G +GG LS EF  + D GE  +      
Sbjct: 181 YQNIMERCKLNYKIVKADTGAMGGSLSEEFQAITDIGEDVIVTCDGC 227



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 3/183 (1%)

Query: 264 NEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                D  P   +     +GIEVG+ F  GTKY+  +   ++  D K H V+MG YG G 
Sbjct: 383 QVHEGDICPVCGKPLKFCKGIEVGNTFKLGTKYAKTLGLEYQDVDNKLHPVEMGCYGFGL 442

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +AA++E  +D  GIIWP SVAPF+++++ + + D+       ++Y  L K G DV  
Sbjct: 443 ERCMAAIVEQHNDEAGIIWPASVAPFEVAVVVVSSKDEEQMRIGNELYEALKKEGIDVLL 502

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+ G +F   +L+G P ++ VG + + + KVE + R      +++L+EVI      
Sbjct: 503 DDRKERPGVKFKDMELIGIPYRITVG-RGIQEGKVEFRARTAAENREIALDEVIKLVKEE 561

Query: 442 FSN 444
              
Sbjct: 562 LQK 564


>gi|283783304|ref|YP_003374058.1| threonine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441631|gb|ADB14097.1| threonine--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 676

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 139/452 (30%), Gaps = 51/452 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      ++ L +    +   G+  + P G   ++ +    RE+  +     
Sbjct: 247 RMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREQHRKHHYSF 305

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 R        P +  +   
Sbjct: 306 VQTPHITKGGLYETSGHLQWYKDGMYPPMKLDEERDENGNVTRQGADYYLKPMNCPMHNL 365

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  +    
Sbjct: 366 IFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIY-CTREQMRDELK 424

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    L +    GL    +   +        S E    A     +V           P 
Sbjct: 425 SLLNFVLGLLKDFGLNDFYLELSTKDEHKFVGSDEIWEEATNTLAEVAKESGLELVDDPG 484

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + +  D++    +VS   ++    F    ++
Sbjct: 485 --------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FNLPERF 520

Query: 295 SLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +  ADG     V +     G++    A++   + G    W   +AP +++ + 
Sbjct: 521 ----KLEYIAADGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAW---LAPVQVTGVP 573

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +           +K+ + L +       D+  ++ G +   A     P  +I G + V++
Sbjct: 574 VA---DEFAPHLQKLISDLEENMVRCEMDNSDDRFGKKIRNASKSKVPFTLIAGEEDVNN 630

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V  + R       + + +   +        
Sbjct: 631 NAVSFRFRDGSQLNGVPVSQAKEWILSIIKQR 662


>gi|319936200|ref|ZP_08010620.1| prolyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319808774|gb|EFW05307.1| prolyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 479

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 147/413 (35%), Gaps = 67/413 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
            +  ++   S KG   + P G    + + A + ++   TG   + +P L    L   E+ 
Sbjct: 27  RKAELMDYSSVKGFIIYRPYGYALWEMIQAYMDKKFKETGHENVYMPMLIPESLLQKEAD 86

Query: 85  RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E   +     D  ++ +I  PT E +  + +   + SYR+LP  + Q     R
Sbjct: 87  HVEGFAPECAVVTRGGLDNLEENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVR 146

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E         +R FL    + +                                     
Sbjct: 147 WEKT-------TRPFLRGSEFLWQ------------------------------------ 163

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E   +  T E     +   +D    +        +      E+     A  +
Sbjct: 164 --------EGHTIHATEEEARAETMQMLDIYEETSRNLLAIPMVTGKKTEREKFAGAEET 215

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 + D          + ++ G   YFG  ++      F   D K  YV   S+G+ 
Sbjct: 216 YTIEALMHDG---------KALQSGTSHYFGDGFAKAFGIQFLDKDNKQKYVHQTSWGV- 265

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R++ A+I    D  G++ P  VAP ++ +I I+       D   ++  +L   G  V 
Sbjct: 266 STRLLGAIIMVHGDDNGLVLPPRVAPTQVMIIPIQQQKDGVLDKAYELEQQLKAHGIRVK 325

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            D   +  G +F+ A++ G PL++ VG + + + +  +  R+ G +  +SL+E
Sbjct: 326 VDATDKSPGWKFSEAEMRGIPLRLEVGPRDLENGQCVVAKRVNGEKITLSLDE 378


>gi|316976611|gb|EFV59868.1| threonyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
          Length = 1190

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 150/436 (34%), Gaps = 72/436 (16%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L + ++   +A    H+ + R     + H+ S G   + P G    + +   +R++  + 
Sbjct: 281 LKLWEKMREEAASRDHRKLGRQQELFIFHELSPGSAFFFPRGAYIYNTLVEFLRKQYRKR 340

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW  SG +  Y K M ++ +   +     P +      I       
Sbjct: 341 GFREVITPNIYNSRLWETSGHWQHYAKNMFKI-EIEKELFGLKPMNCPGHCLI------- 392

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                           +EL     G+ R R F   DA+ F    +               
Sbjct: 393 ----------------NELSGALSGLTRVRRFQQDDAHIF-CRQDQIASEIEGCLDFLRF 435

Query: 184 IFHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++  LG   + +   + P   +G   +       D  E Q+ C+ +    P         
Sbjct: 436 VYETLGFS-MKLYLSTRPDDFMGDVKTW------DEAEAQLQCALEKFKLP--------- 479

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D++    + +   ++    F    ++      
Sbjct: 480 --------WTLNAGDGAFYGPKIDIIVLDAMQRQHQCATIQLD----FQLPVRF----DL 523

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +  K   V +    +G++  + AV+  +  GK   WP  ++P +  +I +     
Sbjct: 524 HYVDENHVKQRPVIIHRAVLGSIERMIAVLTENFAGK---WPFWLSPRQAMVIPVHP--- 577

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              D   ++  ++   G +   D D  + +  +   A L  +   ++VG+K   +S V I
Sbjct: 578 EFDDYALQVQQKIFDAGFECDVDVDASDTMKKKIRNAQLGKWNFILVVGAKEKENSSVNI 637

Query: 419 KHRLTGIREDMSLEEV 434
           + R   +  + SLE +
Sbjct: 638 RTRDNAVLGEYSLENI 653


>gi|308805817|ref|XP_003080220.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058680|emb|CAL54387.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 673

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 145/443 (32%), Gaps = 62/443 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y   I +   RD       L       HQ S G   +   G +  +++   I+E+
Sbjct: 277 MK--EYVTRIEEAKKRDHRTIG--LNQELFFFHQLSPGSCFFQKYGARIYNSLVGYIKEK 332

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  PTL                     L  R ++     P +      +F  
Sbjct: 333 YWEYEYDEVITPTLH--------------------LTCRKEE-FGLKPMNCPGHCVMFAH 371

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+E      G+ R R F   DA+ F    +  +        
Sbjct: 372 RHRSFRELPMRVADFGVLHRNEFSGALSGLTRVRRFQQDDAHIF-CREDQMEQELLGFLR 430

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   GL+   M+  + P G     E    A+   T             P +    
Sbjct: 431 FLDDVYTVFGLEY-EMKLSTRPEGYLGELEVWDKAEAALTAALNRSGRDWKLNPGDG--- 486

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      +  +FD+L    + +   ++    F    ++     
Sbjct: 487 -----------------AFYGPKIDITVFDALKRRFQCATVQLD----FQLPIRF----D 521

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++   + +    + +    +G++  +  ++     GK   WP  ++P ++ ++ I   D
Sbjct: 522 LSYVDENNEPTRPIIIHRAILGSVERMFGILTEHFAGK---WPFWLSPKQVMIVPIS--D 576

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               + C ++   L K G  V  D+   ++  +   A L  F   ++ G     +  V +
Sbjct: 577 SASGEYCMEVKRMLRKEGFHVEVDNSDRKMQKKVREAQLEQFNYILVCGESEKVNRTVNV 636

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R   +  +  +E++I   +  
Sbjct: 637 RTRDNKVHGEHKVEDLITVLNKE 659


>gi|50302871|ref|XP_451373.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640504|emb|CAH02961.1| KLLA0A08448p [Kluyveromyces lactis]
          Length = 672

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 155/444 (34%), Gaps = 76/444 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      + +     +     G      P  + S  L 
Sbjct: 184 QQILTKGEMLDYYDVSGCYILRPASYAIWEQIQRWFDDRIKGLGVQNAYFPMFVSSRVLE 243

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        D+ +   PT E VM   +   I+SYR+LP    Q  
Sbjct: 244 KEKDHIEGFAPEVAWVTRAGTSELDEPIAIRPTSETVMYPYYAKWIQSYRDLPIKLNQWN 303

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E ++    ++   Y  ++    L ++P+ 
Sbjct: 304 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTKEAAEEEVMQILDFYAGVYEE--LLAVPV- 360

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F               DF                 
Sbjct: 361 ---------------VKGRKTEKEKFAG------------GDFTTTCEGYIPQ------- 386

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--- 313
                                + RGI+     + G  +S   + + +   G +H      
Sbjct: 387 ---------------------TGRGIQGATSHHLGQNFSKMFNISVENPLGSEHPKIFAY 425

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQ---VCRDACE 366
             S+G+ + RV+  ++    D KG++ P  V+ F+  ++ +    K  D+      +   
Sbjct: 426 QNSWGL-STRVIGVMVMIHSDNKGLVIPPRVSQFQSVVLPVGITTKTSDEQRAKIHENAR 484

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            I +RL K G   F D +     G +F+  +L G PL++ +G K +   +V    R  G 
Sbjct: 485 AIESRLKKAGIRAFGDYNDNYTPGWKFSQYELKGIPLRIELGPKDLEKEQVTCVRRNDGK 544

Query: 426 REDMSLEEVINYASHRFSNNRPVL 449
           +  +SL ++           +  L
Sbjct: 545 KIVVSLNDLEKRIPEILEELQQDL 568


>gi|298252757|ref|ZP_06976551.1| threonyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297533121|gb|EFH72005.1| threonyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 660

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 139/452 (30%), Gaps = 51/452 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      ++ L +    +   G+  + P G   ++ +    RE+  +     
Sbjct: 231 RMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREQHRKHHYSF 289

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 R        P +  +   
Sbjct: 290 VQTPHITKGGLYETSGHLQWYKDGMYPPMKLDEERDENGNVTRQGADYYLKPMNCPMHNL 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  +    
Sbjct: 350 IFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIY-CTREQMRDELK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    L +    GL    +   +        S E    A     +V           P 
Sbjct: 409 SLLNFVLGLLKDFGLNDFYLELSTKDEHKFVGSDEIWEEATNTLAEVAKESGLELVDDPG 468

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + +  D++    +VS   ++    F    ++
Sbjct: 469 --------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FNLPERF 504

Query: 295 SLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +  ADG     V +     G++    A++   + G    W   +AP +++ + 
Sbjct: 505 ----KLEYIAADGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAW---LAPVQVTGVP 557

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +           +K+ + L +       D+  ++ G +   A     P  +I G + V++
Sbjct: 558 VA---DEFAPHLQKLISDLEENMVRCEMDNSDDRFGKKIRNASKSKVPFTLIAGEEDVNN 614

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V  + R       + + +   +        
Sbjct: 615 NAVSFRFRDGSQLNGVPVSQAKEWILSIIKQR 646


>gi|21674311|ref|NP_662376.1| prolyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|81860050|sp|Q8KCD1|SYP_CHLTE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21647484|gb|AAM72718.1| prolyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 481

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 161/449 (35%), Gaps = 82/449 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +    +I           P G    + + A +     +
Sbjct: 13  SQWYIDLV----RSAKLADYSDVRGCMVIR----------PNGYAIWEKMQAALDGMFKQ 58

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPMFIPESFIAKEAEHIEGFAPECAVVTHGGGEELAEKLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TPE ++    +M 
Sbjct: 119 KKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATPEEAQEEVIRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I+     + + M      +G     E    AD                       
Sbjct: 178 ----NIYRTFAEEYMAMPV---IVGKKSESEKFAGADAT--------------------- 209

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                             E      + ++ G     G  ++   
Sbjct: 210 -------------------------------YCIEAMMQDGKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  DG   YV   S+G+ + R++ A+I +  D KG++ P  +A  ++ +I I K +
Sbjct: 239 DCQFQTKDGVLDYVWATSWGV-STRLIGALIMAHSDDKGLVLPPKLASRQVVIIPILKGN 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
               R     I   L++ G   F DD      G +FA  +L G P+++ +G + +   K 
Sbjct: 298 KDEVRARARFIAKTLNRHGIPTFVDDSENNSPGWKFAEYELQGIPVRIELGPRDLEQGKC 357

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +  R T  + ++ L++ +        NN
Sbjct: 358 IVARRDTFEKTELLLDDELTINIEEILNN 386


>gi|254525440|ref|ZP_05137492.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221536864|gb|EEE39317.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 598

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 3/221 (1%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++AII  E N  G  
Sbjct: 7   LGTLRDTPSEAEIISHQLLLQAGYIRRVNSGIYAYMPIMLRVIEKISAIIERELNSIGCT 66

Query: 68  EMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T I    I S
Sbjct: 67  KLLLPQLHPADLWRKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITSIASETINS 126

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K+  +Y  I
Sbjct: 127 YKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEKVGNAYENI 186

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           F   GL+++ + A+SG IGG  S EF+V AD GE  +  +K
Sbjct: 187 FKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTK 227



 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIE+GHIF  G KYS  ++A F   DGK   + MG YGIG  R+  A IE +HD KGI 
Sbjct: 429 KGIEIGHIFQLGQKYSEKLNAKFSDKDGKLKNLWMGCYGIGVTRIAQAAIEQNHDQKGIC 488

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  ++PF++ +I     D +  +  E+IY        DV  DD  ++ G +F  A+L+G
Sbjct: 489 WPIQISPFEVIIIPTNLKDPIQSELTEQIYNNFLINKIDVLLDDRNDRAGVKFKDAELIG 548

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN-YASH 440
            P Q+I+G +   + +VE+  R    +  +S ++++  + S 
Sbjct: 549 IPFQIIIG-RDSVNKEVELLSRTNNTKFKISTDKLLETFISE 589


>gi|238620001|ref|YP_002914827.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259511621|sp|C4KHU5|SYP_SULIK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238381071|gb|ACR42159.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 481

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 98/439 (22%), Positives = 173/439 (39%), Gaps = 76/439 (17%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           +LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLS 78

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI 
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIV 138

Query: 137 LKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E +    ++R RE    K+A++   T + ++    +       I+ ++   ++ +
Sbjct: 139 SVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIE----IYKKI-FNNLTI 193

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           VL++  E   F                                 
Sbjct: 194 P--------------YVLSERPEWDRFAGALHTYA------------------------- 214

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                       FD++  + +V     ++G + + G  +S  +    +  DG   Y    
Sbjct: 215 ------------FDTIMPDGKVM----QIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQT 258

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYAR 371
           SYGI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   
Sbjct: 259 SYGI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIEICEM 317

Query: 372 LSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       + 
Sbjct: 318 LNKNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVK 377

Query: 431 LEEVINYASHRFSNNRPVL 449
            EEV+N      +  +  L
Sbjct: 378 KEEVVNKVKEVLNEIQEDL 396


>gi|161528166|ref|YP_001581992.1| prolyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|160339467|gb|ABX12554.1| prolyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 480

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 146/412 (35%), Gaps = 69/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG+    P G    +++     ++  + G     +P L    L   E   +  +  E+  
Sbjct: 36  KGLIVLRPDGHSIWESLKNTFDKKFAKNGIRNGFLPVLIPESLLGKEQKHFAGFNPEVFW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E +   ++   I+S+R+LP          R E++     +R
Sbjct: 96  VTHSGTNEIGDRLALRPTSETLAYTLYSKWIQSWRDLPLKINFWNTALRAEIKATKPFLR 155

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EFL ++ ++  +T E ++    K+      I+     + + +   +G           
Sbjct: 156 TSEFLWQEGHTVHITQEEAEQEVMKILD----IYKNTVEEELAIPVTTGK---------- 201

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E + F    +                                          + 
Sbjct: 202 ----KSEKEKFVGAVYT-----------------------------------------TT 216

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E+     + +++G   + G  +S P    F   D  +H+    S+G+ + R++ A+I +
Sbjct: 217 MESIMPDGKALQMGTSHFLGQNFSKPFEVKFADKDNVEHFAWQTSWGV-SWRLIGAMIMA 275

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D +G++ P  VAP ++ ++ I  +D+         ++I   L      V  DD  G  
Sbjct: 276 HGDDQGLVLPPKVAPTQVVIVPIYRNDEGRDKVLPKVKEIQESLEAKDIRVQVDDRQGLS 335

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            G +F   ++ G P+++ +G K +    + +  R    + ++   E+     
Sbjct: 336 PGYKFNDWEMKGVPIRIEIGPKDIEKQSIVVAKRYNREKTNLQFSEIEKVVE 387


>gi|11066246|gb|AAG28517.1|AF197899_1 prolyl-tRNA synthetase [Methanococcus maripaludis]
          Length = 460

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 164/459 (35%), Gaps = 87/459 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEV 113
           +  + TG  E   P L   +L  + G     +  E+  +        +  +   PT E  
Sbjct: 46  KLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRPTSETT 105

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKH 172
           M  + +  IK + +LP   YQ+   FR E +    ++R RE +  K+A++   T +    
Sbjct: 106 MYYMMKQWIKVHTDLPLKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHATKKECDA 165

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +    Y   F  +G   +P      P                         +  FP 
Sbjct: 166 QIEEALTLYKAFFDEIG---VPYVISKRPE------------------------WDKFPG 198

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                 FD I                                     + +++G +   G 
Sbjct: 199 ADYTMAFDTIYPDG---------------------------------KTMQIGTVHNLGQ 225

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++      F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI
Sbjct: 226 NFAKTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLI 284

Query: 353 NI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  K  +++  D  +++   L      V  DD   + G ++   +L G PL++ +G + 
Sbjct: 285 PLLFKGKEEIVMDKIKELNKTLKSE-FRVHLDDRDIRPGRKYNDWELKGVPLRIELGPRD 343

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + +    I  R TG +  +    ++       S  +  L
Sbjct: 344 IENGHALIVRRDTGEKITVEYSNILEEVEKIVSMYKDNL 382


>gi|242043016|ref|XP_002459379.1| hypothetical protein SORBIDRAFT_02g003730 [Sorghum bicolor]
 gi|241922756|gb|EER95900.1| hypothetical protein SORBIDRAFT_02g003730 [Sorghum bicolor]
          Length = 530

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 157/462 (33%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  F     +    AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 56  RSADFNAWYTDVIAAAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 105

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 106 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHM 165

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP    Q     R E+R     +R+ EFL ++ ++   T E ++    +M
Sbjct: 166 FTKWIHSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATLEEAEKEAMQM 224

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y                                        F  +      IP   +
Sbjct: 225 IDVY--------------------------------------TKFAYEHAAIPVIPGRKS 246

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +     N                                 + ++ G     G  +S  
Sbjct: 247 KVETFAGANRTYTIEAM---------------------MGDKKALQAGTSHNLGQNFSRA 285

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
               F   +G+  +V   S+ I + R V  +I +  D  G++ P  +AP ++ ++ I K 
Sbjct: 286 FGTQFMDENGQIEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPRIAPIQVIIVPIWKK 344

Query: 357 HDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
            D+     +A + +   L + G  V  DD   +  G +F   ++ G P+++ +G + V++
Sbjct: 345 GDEKSAVLEAVDSVQKILKEAGIRVKVDDSELRTPGWKFNHYEMKGVPVRIEIGPRDVTN 404

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
             V +  R      G    +S+E   ++N+   R  + +  L
Sbjct: 405 KSVVVSRRDVPGKQGKEFGVSMEPSILVNHIKGRLDDIQASL 446


>gi|288870320|ref|ZP_06113698.2| proline--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288867624|gb|EFC99922.1| proline--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 479

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 145/423 (34%), Gaps = 69/423 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S KG     P G    +N+   +       G   + +P      L   E 
Sbjct: 28  VKKAELIDYSSVKGCMVIKPAGYAIWENIQKELDSRFKTVGVENVYMPMFIPESLLQKEK 87

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     +   + +   PT E +  D +   I SYR+LP  + Q     
Sbjct: 88  DHVEGFAPEVAWVTYGGLEPLTERLCVRPTSETLFCDFYARDIHSYRDLPKVYNQWCSVV 147

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +RSREFL ++ +    T   +           L ++              
Sbjct: 148 RWE-KTTRPFLRSREFLWQEGH----TAHATAEDAQARTEQMLNLYAD------------ 190

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                 FC +      I  + TD +      +            
Sbjct: 191 ----------------------FCEEVLAMPVIRGQKTDKEKFAGAEATYTIEAL----- 223

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G    FG  ++      +   + K  YV   S+G+
Sbjct: 224 ----------------MHDGKALQSGTSHNFGDGFAKAFEIQYSDKENKLQYVHQTSWGM 267

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + R++  +I    D  G++ P  +AP ++ ++ I+   +   +   +I + LS  G  V
Sbjct: 268 -STRLIGGIIMVHGDDNGLVLPPRIAPVQVMIVPIQQAKEGVLEKAAEIKSVLS--GYRV 324

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +FA +++ G P++V +G K +   +  +  R T  +  +SLEE+     
Sbjct: 325 KVDDTDKSPGWKFAESEMRGIPVRVEIGPKDIEAGQAILVRRDTHEKISVSLEEIGQKVG 384

Query: 440 HRF 442
              
Sbjct: 385 ELL 387


>gi|327313290|ref|YP_004328727.1| proline--tRNA ligase [Prevotella denticola F0289]
 gi|326944871|gb|AEA20756.1| proline--tRNA ligase [Prevotella denticola F0289]
          Length = 493

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 175/463 (37%), Gaps = 88/463 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+   + AE  S     L+++  +  Q + +G     P G    + + A + +    TG 
Sbjct: 5   LKHMTKRAENYSQWYNDLVVKAELAEQSAVRGCMVIKPYGYAIWEKMQAQLDKMFKETGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    + ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKATEDGNGVEVDPNAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHAT- 182

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +    K   + L                             V AD  E  +      
Sbjct: 183 ---REEAEKEAQTML----------------------------HVYADFAEKWLAVPVVQ 211

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               + SE   F   +   +I                               + ++ G  
Sbjct: 212 G---VKSETERFAGALDTYTIEAM------------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRIAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++++I I   ++  ++   K+     +L ++G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVAIIPIFKGEEQLKEITAKLQPVIDQLRELGITVKYDDSDNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +G + + D+ +E+  R T  +E++S + ++        + +
Sbjct: 364 LAMGGRDLQDNTIEVMRRDTLEKENVSFDGIVGRVKSLLDDIQ 406


>gi|317471035|ref|ZP_07930410.1| prolyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316901476|gb|EFV23415.1| prolyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 156/427 (36%), Gaps = 68/427 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           + +  +I   S KG     P G    +N+  ++  +   TG   +++P      L   E 
Sbjct: 26  VKKAELIEYSSVKGCMILRPNGYAIWENIQKVMDAKFKETGVENVAMPMFIPESLLEREK 85

Query: 84  GRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +      + ++ +   PT E +  D + + I+SYR+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTHGGNKKLEERLCVRPTSETLFCDFYSNIIQSYRDLPKLYNQWVSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E   R   +R+ EF  ++ ++   T +       +  V  L ++              
Sbjct: 146 RWEKSTR-PFLRTSEFYWQEGHTAHATAD----EAEERTVQMLNMYAD------------ 188

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                 FC +      +  + T+ +     N+            
Sbjct: 189 ----------------------FCEQYLAIPVVKGQKTEKEKFAGANATYTIEAL----- 221

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G    FG  ++      +   + K  YV   S+G+
Sbjct: 222 ----------------MHDGKALQSGTSHNFGDGFAKAFDIQYTDKNNKLQYVHQTSWGM 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + R++ A+I    D  G++ P  +AP +  ++ I    +   +  E+I  RLSK    V
Sbjct: 266 -STRIIGAIIMVHGDDSGLVLPPKIAPVQTMIVPIMQKKEGVLEKAEEIRERLSK-NYKV 323

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +F+  ++ G P ++ +G K +  ++  I  R T  +  +SL+E+ +  S
Sbjct: 324 KVDDSDKSPGWKFSEQEVQGIPTRIEIGPKDIEKNQAVIVRRDTREKIFVSLDEIESKLS 383

Query: 440 HRFSNNR 446
                 +
Sbjct: 384 EVLDQMQ 390


>gi|71394075|gb|AAZ32114.1| prolyl-tRNA synthetase [uncultured euryarchaeote Alv-FOS5]
          Length = 472

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 159/454 (35%), Gaps = 86/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  +L+     AE+  +             KG+  W P G K    V  ++RE   
Sbjct: 8   FSEWYQEVLE----SAELVDN---------RYPVKGMLVWRPNGFKIRKYVTDLLRELLE 54

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
            TG  E+  PTL     L  E      +G E+  +        D  +   PT E  M  +
Sbjct: 55  ETGHQEVLFPTLIPETALNKEGEHIRGFGSEVYWITHGGETPLDVKLALRPTSETAMYPM 114

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNK 176
           F   I+S+ +LP   +QI   FR E +    ++R RE    K+A+               
Sbjct: 115 FALWIRSHADLPLRVFQIVSVFRYETKHTRPLIRVREVSTFKEAHC-------------- 160

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                                                A   E +       +D    +  
Sbjct: 161 -------------------------------------ALKTEEEAEKEMRIIDGVYKAFW 183

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +                  A  +  ++             + R +++        K+S 
Sbjct: 184 DELGIPFVRVQRPSWDKFAGADKTIAYDTI---------MPTGRTLQIATSHRLSQKFSE 234

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                ++  +G+     + S+GI + R +AA++    D +G++ P   AP ++ ++ I  
Sbjct: 235 VFDVKYEDENGEQKLAYLTSHGI-SERAIAALVGIHGDNRGLVLPPRFAPVQVVIVPILY 293

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K  +    +   ++Y +L K    V  DD     G +F   +L G P+++ +G + V + 
Sbjct: 294 KGKENQVMEKAMEVYEKL-KYNWRVELDDSDSNPGDKFYYWELRGVPIRIEIGPRDVENG 352

Query: 415 KVEIKHRLTGIREDMSLEEV---INYASHRFSNN 445
            V +  R T  +  + +EE+   IN  +    NN
Sbjct: 353 VVTLARRDTKEKTQVKMEELEDKINRLAEEIHNN 386


>gi|283769476|ref|ZP_06342372.1| proline--tRNA ligase [Bulleidia extructa W1219]
 gi|283103744|gb|EFC05130.1| proline--tRNA ligase [Bulleidia extructa W1219]
          Length = 561

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 95/222 (42%), Positives = 139/222 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    +   L+EN +D +  S  L++R GMI + S G+Y  LP+G K  + + +II+EE
Sbjct: 1   MRLKNSYFFTLRENAKDEDSQSSNLLVRAGMIKKSSTGVYMILPMGLKVFNKIKSIIQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+ +P+L   +++V SGR + +G +M  L DR ++  + GPTHEE+     + 
Sbjct: 61  MEAIHCQELLMPSLIPEEVYVASGRREGFGSDMFSLKDRKNQNYVLGPTHEELFATAAKL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF+ YQIQ KFRDE RPR+G++R REF MKDAYSFD    G   SYNK F +
Sbjct: 121 KIRSYKDMPFSIYQIQTKFRDEPRPRYGLIRVREFQMKDAYSFDANEAGMDSSYNKQFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y  IF RLGL  + ++A++G +GG LS EF  L+  GE  + 
Sbjct: 181 YKNIFDRLGLNYVVVKADTGVMGGLLSEEFQALSPVGEDTLA 222



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 2/200 (1%)

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +     +            E       +      +GIEVG+ F  GTKYS  M   
Sbjct: 363 YHYCDVNPSDFEVSQYGDFRQIQEGDRCPSGQGFIHFEKGIEVGNTFKLGTKYSKAMDLQ 422

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +  A+ +  YV MG YGIG  R +AA++E ++D  GI WP ++AP++ S+  I   D   
Sbjct: 423 YSNANNQLEYVWMGCYGIGPARAMAALVEQNYDENGINWPKNLAPYRCSITIISMKDDQQ 482

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 +Y +L K G DV  DD  E+ G +F   DL+G P Q+ VG K V D +VEIK R
Sbjct: 483 IQVANDLYDQLRKAGIDVLLDDRDERPGVKFKDMDLIGIPTQITVG-KNVVDGQVEIKER 541

Query: 422 LTGIREDMSLEEVINYASHR 441
              +++ +S++ V++Y + +
Sbjct: 542 G-HMKQSISIDSVLDYLTQK 560


>gi|242018749|ref|XP_002429836.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212514854|gb|EEB17098.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 379

 Score =  245 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 106/391 (27%), Positives = 179/391 (45%), Gaps = 34/391 (8%)

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A+EM +P L    ++  SG   ++  ++ +     +++ I  PT EE+++++  S
Sbjct: 1   MNEISALEMLLPLLTDKKIFSASG--KAHLPDLFKFNQNVNESYILNPTCEEIVSELLAS 58

Query: 121 HI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +   SY+NLP  FYQI  KFRDE RP++G++RS+EF+MKD Y FD T E S  +Y ++  
Sbjct: 59  YTQMSYKNLPCRFYQISSKFRDEKRPKYGLLRSKEFIMKDLYCFDSTFESSMMTYEEVKN 118

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y   F+ LG+  + ++   G IGG  S EF  +AD G+  +                  
Sbjct: 119 KYKEFFNNLGIPYVVVKGTEGDIGGLKSDEFYFMADVGDNNLV----------------- 161

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   + ++            N+++  +         +GIEVGH F  GTKYS   +
Sbjct: 162 --------LCQKCGHKECIEFVKLNDQVCSNCQNGDVKIFKGIEVGHTFQIGTKYSKIFN 213

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             +   D +   V+M  +G+G  R++AA +E       I WP S+ P+++ LI  K +  
Sbjct: 214 TNYLSKDNEKIPVEMCCFGLGLTRILAASVEVLSSFNEIRWPHSIVPYQVCLIPPKKNSI 273

Query: 360 VCR---DACEKIYARL-SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD- 413
             R   D    ++  L    G D+  DD     IG +      LG P  +I+G   + + 
Sbjct: 274 EERQGGDIVNILFNELYRTFGNDLVVDDRTSMTIGKRIQSIKELGLPFAIIIGKDIIKNP 333

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             VE+          + + ++  +   R  +
Sbjct: 334 PLVEVYDVYKNHSTFLQINDLCRFIQDRIKD 364


>gi|325854993|ref|ZP_08171709.1| proline--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325483971|gb|EGC86911.1| proline--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 493

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 175/463 (37%), Gaps = 88/463 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+   + AE  S     L+++  +  Q + +G     P G    + + A + +    TG 
Sbjct: 5   LKHMTKRAENYSQWYNDLVVKAELAEQSAVRGCMVIKPYGYAIWEKMQAQLDKMFKETGV 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    + ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKATEDGNGVEVDPNAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHAT- 182

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +    K   + L                             V AD  E  +      
Sbjct: 183 ---REEAEKEAQTML----------------------------HVYADFAEKWLAVPVVQ 211

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               + SE   F   +   +I                               + ++ G  
Sbjct: 212 G---VKSETERFAGALDTYTIEAM------------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRIAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++++I I   ++  ++   K+     +L ++G  V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVAIIPIFKGEEQLKEITAKLQPVIDQLRELGITVKYDDSDNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +G + + D+ +E+  R T  +E++S + ++        + +
Sbjct: 364 LAMGGRDLQDNTIEVMRRDTLEKENVSFDGIVGRVKSLLDDIQ 406


>gi|269468318|gb|EEZ79994.1| threonyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 369

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 129/379 (34%), Gaps = 49/379 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K +L  L+E    AE   H+ + +T     + + + G+  W   G      V   +R   
Sbjct: 32  KDYLYRLEE----AEKRDHRKIGKTQDLFHMQEEAPGMVFWHEKGWTLYQIVEQYMRSVF 87

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P L    LW +SG +D +G  M   +  N +     P +      I+   
Sbjct: 88  RDNDYKEVHTPQLIDKSLWEKSGHWDKFGDAMFTTSSEN-RDYAVKPMNCPAHIQIYNQG 146

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F+  D + F  T    +   +     
Sbjct: 147 LKSYRDLPLRLAEFGSCHRNEPSGTLHGIMRVRNFVQDDGHIF-CTENQIQDEVSTFIDL 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +++ ++  + P     S E    A+    +   +K         E   + 
Sbjct: 206 TFDVYKNFGFENVDIKLSTRPENRVGSDEVWDRAEAALAEALDAKGIKWDLQEGEGAFYG 265

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--M 298
             I                               K    R  + G        +S+P  +
Sbjct: 266 PKIEF---------------------------VLKDCLDREWQCGT---LQVDFSMPERL 295

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +A +   D  K   V +    +G++     ++   ++G    W   +AP +  ++NI   
Sbjct: 296 NAHYIAEDNSKQTPVMLHRAIVGSLERFVGILIEHYEGAFPSW---LAPIQAVILNI--- 349

Query: 358 DQVCRDACEKIYARLSKVG 376
            +   D    +  +L   G
Sbjct: 350 SEKQHDFVANVEKKLKGGG 368


>gi|298675789|ref|YP_003727539.1| prolyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288777|gb|ADI74743.1| prolyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 479

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 170/456 (37%), Gaps = 84/456 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  IL      AEI           +    KG+Y W P G        +IIRE  +
Sbjct: 15  FSEWYNDIL----VKAEIMD---------VRYPVKGLYVWNPFGFSIRKKTYSIIRELLD 61

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
                E   P L    +   E+     + +E+  +        +  +   PT E  +  I
Sbjct: 62  -RDHEETLFPLLIPENEFMKETKHIKGFEEEVYWVTHGGTSPLEVNLALRPTSETAIYPI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNK 176
           ++  ++S+ +LP  +YQI   FR E +    ++R RE    K+A++     E  + +  +
Sbjct: 121 YKLWVRSHADLPIKYYQIVNTFRYETKHTRPLIRLREITSFKEAHTVH---ETWEDAAAQ 177

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +                        D  HEF    +     V  SK       P  +
Sbjct: 178 VDEAI-----------------------DRYHEFY---ERLCLPVLTSKRPEWDKFPGAD 211

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                                               +      R ++VG   + G  ++ 
Sbjct: 212 YTIA-------------------------------VDALMPDGRTLQVGTAHHLGNNFAK 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                ++  +G+  Y     YGI + R +AA+I    D KG+I P  +AP ++ +I I  
Sbjct: 241 TFDIEYEDPNGEQVYAYQSCYGI-SERCIAAMISVHGDDKGLILPPEIAPVQVIIIPIIF 299

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                +   DAC+ +   L   G     D    + G+++   ++ G PL++ +G K + +
Sbjct: 300 KNKDKESILDACKNVKGSLESAGVKTKIDTSDRRPGAKYYRWEMKGVPLRIEIGPKDLKN 359

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             V +  R TG +E ++++E+ +  + +F + +  L
Sbjct: 360 ESVMMVRRDTGDKEQIAMDEINDTVASKFESIKSNL 395


>gi|332880161|ref|ZP_08447843.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681920|gb|EGJ54835.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 493

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 164/448 (36%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+++  +  Q   +G     P G    + +  ++ ++   TG      P L       
Sbjct: 20  NELVVKADLAEQSDVRGCMVIKPYGYAIWEKMQRVLDDKFKETGVQNAYFPLLIPKSFLS 79

Query: 81  VESGRYDSYGKEM-----LRLADRND-------------KAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE       RL    D             + +I  PT E ++ + +++ I
Sbjct: 80  KEAEHVEGFAKECAVVTHYRLKTNEDKTGVVVDPAAKLEEELIIRPTSETIIWNTYKNWI 139

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E+R R   +R+ EFL ++ +    T   ++    +     L
Sbjct: 140 QSYRDLPILCNQWCNVMRWEMRTRL-FLRTAEFLWQEGH----TAHATREEAEERAKLML 194

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                       + A+                       F  +      +    ++ +  
Sbjct: 195 -----------KVYAD-----------------------FAEQYMAVPVVQGVKSETERF 220

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                                                + ++ G   + G  +    +  F
Sbjct: 221 AGALDTYTIEAM---------------------MQDGKALQSGTSHFLGQNFGKAFNVQF 259

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--- 359
              D K  Y    S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  + +   
Sbjct: 260 INKDNKLEYAWATSWGV-STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYKNAEQLK 318

Query: 360 VCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +  E I ARL  +G  V +D+   ++ G +FA  +L G P+++++G + + ++ VE+
Sbjct: 319 AIDEKVEGIVARLRALGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTVEV 378

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E  + + + +Y        +
Sbjct: 379 MRRDTLEKETRTCDGIEDYVKTLLDEIQ 406


>gi|170592483|ref|XP_001900994.1| probable proline-trna synthetase - fission yeast [Brugia malayi]
 gi|158591061|gb|EDP29674.1| probable proline-trna synthetase - fission yeast, putative [Brugia
           malayi]
          Length = 396

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 173/384 (45%), Gaps = 42/384 (10%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           + +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  EM  L+D+ ++     
Sbjct: 18  RIIDKLIKVIETELNAIGAYKISMPILGAKEMWQKAGRWSAFESEMFHLSDKTNQIYCLQ 77

Query: 108 PTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           PTHEE++T +     +  +   P   YQ+  KFRDE     G +RSREFLM D YSFDLT
Sbjct: 78  PTHEEMVTKLVAEQGELRQAVYPLMLYQMGPKFRDETVVGHGFLRSREFLMNDLYSFDLT 137

Query: 167 PEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            + +  +Y+ +  +Y RIFH RLG+    +RA++G IGGD+SHE+ +   TG   +    
Sbjct: 138 EQNASDTYSLVSKTYQRIFHDRLGINFYIVRADAGNIGGDMSHEYHLPCKTGRDSIAYCS 197

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                     N D            +                              IE+ 
Sbjct: 198 KCNL----GMNHDLLKRGEKPCCCSKEYIS----------------------IVETIEIA 231

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSV 344
           H F  G  ++    A           + M  +GIG  R++AA+I+S     K +  P ++
Sbjct: 232 HTFQLGDLFTKKFGAKHDN-----QPLIMNCFGIGIGRLIAAIIDSMSPSTKALRLPYAL 286

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSK---VGCDVFWDDM-GEQIGSQFAVADLLGF 400
            PFK+++I          +  E I   LS+   V  D+F DD     IG +   A  LG 
Sbjct: 287 VPFKVAVILPNKTQSETMEFAENIIGHLSQISSVQNDIFVDDRLDNSIGRRLLTAANLGI 346

Query: 401 PLQVIVGSKFV----SDSKVEIKH 420
           P   +VG++      ++  VE   
Sbjct: 347 PHIFVVGNRTARTLNNNPVVEYYR 370


>gi|193213223|ref|YP_001999176.1| prolyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|259511581|sp|B3QPX3|SYP_CHLP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193086700|gb|ACF11976.1| prolyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 481

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/454 (17%), Positives = 163/454 (35%), Gaps = 83/454 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +    +I           P G    + + A +      
Sbjct: 13  SQWYIDLV----RSAKLADYSDVRGCMVIR----------PNGYAIWEKMQAALDGMFKE 58

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPMFIPESFIAKEAEHIEGFAPECAVVTHGGGEELAEKLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++    PE ++    +M 
Sbjct: 119 KKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHADPEEAQEEVIRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++     + + M      +G     E    AD                       
Sbjct: 178 ----NVYRTFAEEYMAMPV---IVGKKSESEKFAGADAT--------------------- 209

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                             E      + ++ G     G  ++   
Sbjct: 210 -------------------------------YCIEAMMQDGKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
              F+  +G   YV   S+G+ + R++ A+I +  D KG++ P  +A  ++ +I I K  
Sbjct: 239 DCQFQTKEGVLDYVWATSWGV-STRLIGALIMAHSDDKGLVLPPKLASRQVVIIPILKGD 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +  R     I   L+K G   F DD      G +FA  +L G P+++ +G + +++ K 
Sbjct: 298 KEEVRAHARFIAKALNKHGISTFVDDSENNSPGWKFAEYELQGIPVRIELGPRDIAEGKC 357

Query: 417 EIKHRLTGIREDMSLE-EVINYASHRFSNNRPVL 449
            +  R T  + ++ L+ E+        +N +  L
Sbjct: 358 IVARRDTFEKTEVLLDAEMTENIEEILNNIQQNL 391


>gi|326936120|ref|XP_003214106.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial-like, partial
           [Meleagris gallopavo]
          Length = 550

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 138/443 (31%), Gaps = 62/443 (13%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           S   L   Q++   A +  H+ + +       H  S G   +LP G    + +   IR E
Sbjct: 153 STQELEAWQQDQDAAALRDHRRIGKEQELFFFHALSPGSCFFLPRGAHIYNTLIDFIRSE 212

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + S  LW  SG +  Y   M        + +   P +      +F  
Sbjct: 213 YQARGFSEVVTPNIFSPRLWELSGHWQHYSAHMFSFTA-GTETLSLKPMNCPAHCLMFAH 271

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+E      G+ R R F   DA+ F    E  +        
Sbjct: 272 RPRSWRELPLRLADFGVLHRNEPPGSLTGLTRVRRFQQDDAHIFCA-LEQLEAEIGACLD 330

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+  LG     M   + P G          A+    +              +    
Sbjct: 331 FVRSIYATLGFSF-QMALATRPDGFLGDAATWDRAEQQLEKSLQDFGEPWELSQGDG--- 386

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + ++ D+L  + +     ++      FG +Y+    
Sbjct: 387 -----------------AFYGPKIDIRIQDALGRHHQCGTIQLDFQMPERFGLEYASAAG 429

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G    V +    +G++  + AV+  S  GK   W  SV               
Sbjct: 430 -------GTARPVLIHRAVLGSVERMVAVMAESCGGK---WGTSV--------------- 464

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                    +A L + G     D D G  +G +   A L  +  Q++VG +      V +
Sbjct: 465 ---------HAMLRRDGVMADLDADAGATLGRKIRRAQLTHYNFQLVVGRREQEHGTVSV 515

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R      + SL +V+      
Sbjct: 516 RTRDNRQLGEHSLGQVLQRLREL 538


>gi|258578341|ref|XP_002543352.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237903618|gb|EEP78019.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 653

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 141/422 (33%), Gaps = 62/422 (14%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   + P G   L+ + A +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 201 YSPGSPLFQPNGTHILNKLLAFLRAQYRQYGFQEVLTPTIYKKSLWELSGHWQNYKDDMY 260

Query: 95  RLADR------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            +  R             D++    P +      +F+S   SYR+LP  +       R+E
Sbjct: 261 EVRGRGATGETTHGEIGEDESYGLKPMNCPGHCLLFKSQKWSYRDLPVRYADFSPLHRNE 320

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +     G+ R R F   D + F   P+               +    GL    +   + P
Sbjct: 321 VSGSLSGLTRVRRFHQDDGHIF-CRPQQIGREIQLALKFTDTVMKTFGLGEYKLVLSTRP 379

Query: 202 IGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 S E    A+                   +                     A   
Sbjct: 380 EKDFIGSLELWDAAEKQLKDALEKSGRNWEINEGDG--------------------AFYG 419

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYG 318
              + +L DS  +  ++S   +++     FG +Y +P       A  DGK   V +    
Sbjct: 420 PKIDFQLQDSDGKFHQLSTIQLDMNLPQRFGLEYMVPEGEEDYNASTDGKGTPVLIHRAI 479

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKI------- 368
            G++    A++   ++G    WP  ++P +  ++ +   D V     +A  K+       
Sbjct: 480 FGSLERFFALLIEHYNG---RWPFWLSPRQAIILTVNQDDDVLKAADEAAAKMCGYQRIP 536

Query: 369 ---YARLSK---------VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 L               V  D     +  +   A ++ + L  ++G K ++D  V
Sbjct: 537 FHEANELEAPSQPLSPLQPSFHVTVDKSARSLAKKIREAQIMKYNLIFVIGPKNLADGSV 596

Query: 417 EI 418
           ++
Sbjct: 597 DV 598


>gi|306836251|ref|ZP_07469233.1| threonine--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567843|gb|EFM43426.1| threonine--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 687

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/455 (14%), Positives = 142/455 (31%), Gaps = 52/455 (11%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +++E   RD      +L L +    +   G   + P G      +    R    + G
Sbjct: 255 YQTMVEEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGATVRMEMENHSRNRHVQAG 313

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHEEV 113
              ++ P +   DL+ +SG  D Y   M      + +                 P +  +
Sbjct: 314 YSFVNTPHITKGDLFRKSGHLDFYSDGMFPPMQLDGEYDAEGNAVKEPQDYYAKPMNCPM 373

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  + 
Sbjct: 374 HNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQLEEE 433

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
              ++    + +    GL    +   +  P     S E    +      V         P
Sbjct: 434 L-TQVLDFIISLLEDYGLSDFYLELSTKDPNKFVGSDEIWERSTAILQSVAEKSGLELVP 492

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            P                       A      + +  D++    ++S   ++    F   
Sbjct: 493 DPE--------------------GAAFYGPKISVQARDAIGRTWQMSTVQLD----FNLP 528

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +  +DG K   + +     G++     V+   + G    W   +AP ++ 
Sbjct: 529 ERF----ELEYTASDGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAW---LAPHQVM 581

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +           E + A+L + G     D   +++  +         P  ++ G++ 
Sbjct: 582 GIPVADD---FVPHLEGVAAKLRRKGIRADVDTSDDRMQKKIRNHTTGKVPFMLVDGARD 638

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                V  +         + ++E +   S   +  
Sbjct: 639 AEAGAVSFRFLDGTQVNGVPVDEAVELISTWVAER 673


>gi|329942565|ref|ZP_08291375.1| prolyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|332287196|ref|YP_004422097.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|313847792|emb|CBY16782.1| prolyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506498|gb|ADZ18136.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328815475|gb|EGF85463.1| prolyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328914444|gb|AEB55277.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 577

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/229 (37%), Positives = 135/229 (58%), Gaps = 2/229 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKEASVLSYELLEKAGYIFKTAKGIYTYTPLFWRVARKMMEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E  +  L DR DK     PTHEE+++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTLKDREDKEFCLAPTHEEIVSLFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   ++LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKHLPLHLYQIATKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMNKQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +Y  IF RL ++ + + A+ G IG   S EF VL+  GE  +  S  +
Sbjct: 181 QAYQNIFDRLDIQYVIVEADGGKIGKGKSEEFHVLSSLGEDTICVSGHY 229



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 5/236 (2%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               D    +              ++  + ++     I       Y          L  +
Sbjct: 341 NCPIDFYADETTQCMTNFICAGNVKDKHYKNVNWDRDIP---RPEYTDFLLAEAGDLCPA 397

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                     G+EV HIF  GT+Y+      F+   GK     MG+YGIG  R +AA IE
Sbjct: 398 NNNAPYEIFAGVEVAHIFNLGTRYTECFEVVFQDEQGKPQSCWMGTYGIGIGRTLAACIE 457

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D +GI+WP ++APF I+++     D  C +A EKIY  L   G     DD  E++G 
Sbjct: 458 QLADDRGIVWPKAIAPFDITIL-YNGGDATCEEAAEKIYKELQCHGYAPLLDDRNERLGF 516

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   +DL+G P ++I+G  F++   +EI+ R    +  +  ++  N+      + R
Sbjct: 517 KLKDSDLIGIPYKLILGKTFLNSGMLEIESRSI-EKFSVEPKDFFNWCKSHLPSPR 571


>gi|331001642|ref|ZP_08325165.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330413363|gb|EGG92730.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 651

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 150/452 (33%), Gaps = 41/452 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIRE 59
           SK  L    ++  D ++  H  + R   +        +G+   LP G K +  +   I +
Sbjct: 222 SKEELEAHLKHLEDIKLRDHNKLGREMELFTTVDVIGQGLPLMLPKGTKMIQKLQRWIED 281

Query: 60  -EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTD 116
            E N  G +    P +  +DL+  SG +D Y   M  L D   + + +   P        
Sbjct: 282 LEDNEWGYVRTKTPLMAKSDLYKISGHWDHYQDGMFILGDPQNDGEILALRPMTCPFQYY 341

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++++  KSYR+LP+   +    FR+E      G+ R R+F + + ++  + P+ ++    
Sbjct: 342 VYKNTQKSYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNV-IRPDQAEEELQ 400

Query: 176 KMFVSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 + +   LGL   +  R                  D      +   D       +
Sbjct: 401 NCLNLAIYVLDILGLRDDVTFRLSK--------------WDKNNKGKYLGDDAYWEGTQA 446

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              +   ++       +     A      + +  +   +   +    ++           
Sbjct: 447 ALRNI--LVEKGLPFTEADGEAAFYGPKIDIQAKNVYGKEDTMITIQLDAA--------I 496

Query: 295 SLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +      +    G K     +    +G      A +   + GK   W   +   ++ ++ 
Sbjct: 497 AENFDLYYIDQSGAKVRPYIVHRTSLGCYERTLAWLIEKYAGKFPTW---LCAEQVRILP 553

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I        +    +   L K G D   D   E+IG +   A L   P  ++VG K  ++
Sbjct: 554 I---SDKYAEYANIVLKELKKNGVDATVDTRTEKIGFKIRDARLSRLPYMLVVGEKEEAE 610

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V ++ R  G      L + ++         
Sbjct: 611 GSVSVRSRFAGDEGSKKLSDFVDMICKEIRTK 642


>gi|310823910|ref|YP_003956268.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309396982|gb|ADO74441.1| Threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 397

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 127/414 (30%), Gaps = 44/414 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L    + + + G+  W P G      +   +R E    G  E+  P +  
Sbjct: 6   DHRALGDRLDLF--HLQEEAPGMVFWHPRGFVLYQLLEERVRRELASGGYREVRTPQVLG 63

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG + ++   M  L D  ++     P        +F+    S+R+LP    +  
Sbjct: 64  QRIWESSGHWQNFRHGMFVL-DDGERPFAMKPVSCPGHIQLFQRLAPSFRSLPLRMAEFG 122

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G+ R R+F   D + F +  E           S    +   G +   +
Sbjct: 123 LVHRNESSGALHGLFRLRQFTQDDGHIFCM-EEQVADEVAAFCRSLRAFYRGFGFEDAQV 181

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              S P            A          +        +     D  +            
Sbjct: 182 AFSSRP------------AQRAGDDALWDRAEAALLEAAGRVGLDCRMQPGEGAFYGPKL 229

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYV 312
                              K  S R  + G I      + LP      +  + G K    
Sbjct: 230 EF---------------ILKDRSGRDWQCGTI---QLDFVLPERFDLHYVDSGGEKRRPA 271

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +     G++     ++   H G   + P  +AP ++ ++ + A          ++   L
Sbjct: 272 MLHRAIFGSVERFLGILLEHHQG---VLPAWLAPEQVRVLPVGADSHA---YAAEVQEHL 325

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
              G  V  D  GE +  +   A     P  V+VG +  +   ++I+ R    R
Sbjct: 326 LAAGLRVEADARGETLSRRILEAHQDAVPFAVLVGPREQAGRSIQIRERGGAQR 379


>gi|302552824|ref|ZP_07305166.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302470442|gb|EFL33535.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 416

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 148/446 (33%), Gaps = 46/446 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E P       H+ + R   +         G+  WLP G      +   +RE + R G   
Sbjct: 4   EEPTMTTQPDHRRLGRELDLFDTDPLMGAGLPYWLPDGAIVRHTLEEYVREAERRAGYRH 63

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P L   +L+  SG +D Y ++M    +   + ++  P+       I+RS   SYR L
Sbjct: 64  VYSPVLGKRELYEISGHWDHYSEDMFPPMELGAEQVLLRPSLCPHHALIYRSRSHSYREL 123

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++   +R EL     G+ R R   + DA+ F  T E +            R +  
Sbjct: 124 PLRMAELGGMYRSELSGVLGGLTRVRAITLNDAHIF-CTLEQAVEEARSALELIGRAYAD 182

Query: 188 LGLKSIPMRAESGPIGGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           LG++    R      GG      E    A     +V                        
Sbjct: 183 LGIRPARYRLSLPGEGGKYVADPELWRRATALLREVLDGSGIRYEAAEG----------- 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                      A      + ++ D       +S   I+                  + G 
Sbjct: 232 ---------EAAFYGPKIDVQITDPAGREATLSTVQIDFHQPER--------FDLHYIGP 274

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG K   V +    IG++    A +  SH G     P  +AP +++++ +        + 
Sbjct: 275 DGAKHRPVMVHRSIIGSVERAVAHLVESHGGAF---PPWLAPVQLAILPVA---DEQAEH 328

Query: 365 CEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++  R   +G      D  E  + ++   A L   P Q ++G++  +   V ++ R  
Sbjct: 329 AHELARRARDLGLRAEVADPAEGTLAARIRAARL--VPYQAVIGAREAAAGLVAVRLRDG 386

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
              E +   E++     R +     L
Sbjct: 387 HRPEPLPAAELLRRVGDRVAARGTGL 412


>gi|255283096|ref|ZP_05347651.1| proline--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255266398|gb|EET59603.1| proline--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 479

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 150/449 (33%), Gaps = 76/449 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             KG     P G    +N+   +     
Sbjct: 14  MEEDFAQWYTDVVKKAELTDYT----------SVKGCMVIKPAGYAIWENIQHELDRRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
            TG   + +P L    L   E    + +  E+  +         + M   PT E +  D 
Sbjct: 64  ETGVENVYLPMLIPESLLQKEKDHVEGFAPEVAWVTHGGLEPLQERMCVRPTSETLFCDF 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + + I SYR+LP  + Q     R E +     +RSREFL ++ ++   T E ++    +M
Sbjct: 124 YANDIHSYRDLPKVYNQWCSVMRWE-KTTRPFLRSREFLWQEGHTAHATAEEAEERTIQM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++                                    FC +      I    T
Sbjct: 183 ----LNVYAD----------------------------------FCEEFLAIPVIKGRKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +      +     +                          + ++ G    FG  ++  
Sbjct: 205 DKEKFAGAEATYTIESL---------------------MHDGKALQSGTSHNFGDGFAKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   D    YV   S+G+   R++ A+I    D  G++ P  VAP ++ +I I+  
Sbjct: 244 FGIQYADKDNTLKYVHQTSWGMT-TRMIGAIIMVHGDNSGLVLPPRVAPTQVMVIPIQMQ 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++   L+  G  V  DD  +  G +F+  ++ G P+++ +G K +   +  
Sbjct: 303 KDGVLDKANEVKTALAAAGLRVKLDDSEKSPGWKFSEQEMRGIPVRIELGPKDIEAGQAV 362

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I  R T  +    L E+    +      +
Sbjct: 363 IVRRDTREKLVTPLSELPQKTAEVLETMQ 391


>gi|260888481|ref|ZP_05899744.1| threonine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|330838210|ref|YP_004412790.1| threonyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|260861678|gb|EEX76178.1| threonine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|329745974|gb|AEB99330.1| threonyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 593

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 155/453 (34%), Gaps = 55/453 (12%)

Query: 6   YFLPILQENP------RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           Y  P  +E        +DA+   HK +   L   M  + + G+  WLP G K  + +   
Sbjct: 161 YAFPTKEELKAHLAFIKDAQERDHKKIGPQLDLFMFDETAPGMPYWLPRGWKLFNALLEF 220

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHE 111
            R      G  E+S P + +  LWV SG +  Y + M  +         D      P + 
Sbjct: 221 WRGIHEAHGYQEVSAPVINNKRLWVTSGHWAHYKENMFLIPGADGDIEADDTFAIKPMNC 280

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGS 170
                I++   +SYR+LP  +  + +  R E      G+ R + F   D ++F +  + +
Sbjct: 281 PNAIKIYQRKTRSYRDLPIRYNTVDVIHRKEKSGELNGLFRVQLFRQDDDHTFLMEDQIA 340

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
               + M ++   I+  LG+        + P       E   +A+     +   K     
Sbjct: 341 AEMGDIMDIA-DEIYSTLGMSC-KAELSTRPDDFMGDIETWNVAEKELKAILDRKYG--- 395

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                            + E   A Y    D+            K    R  +VG     
Sbjct: 396 ------------EGNYEVNEGDGAFYGPKIDLK----------MKDALGREWQVGT---L 430

Query: 291 GTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              + LP      +   DG     V +     G+M     V+  +  G    W   ++P 
Sbjct: 431 QLDFQLPQNFDLKYIAKDGSHKQPVVLHRAIFGSMERFIGVLIENFKGAFPFW---LSPV 487

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++ ++ I+       D  +K+  +L K       D   + +  +         P  +++G
Sbjct: 488 QVGIVPIRP---EHNDYAKKVAQKLFKSRVRFEVDYADKNMREKIKGFKHYKDPYILVLG 544

Query: 408 SKFVSDSKVEIKHRLTGIR-EDMSLEEVINYAS 439
            K   ++ V I  R T  + +D+ L+  I    
Sbjct: 545 DKEAEENTVSINVRGTNEQLKDVPLDTFIEMCR 577


>gi|281206251|gb|EFA80440.1| prolyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 880

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/242 (39%), Positives = 144/242 (59%), Gaps = 1/242 (0%)

Query: 3   RSKYFLPILQENPRDAE-IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RSK F+P+ ++ P D + + S  LM +TGMI + S G+Y  LPL  +AL+N+  II +E 
Sbjct: 342 RSKLFIPMQRDQPLDKDMLKSQLLMQKTGMIRRASLGMYMTLPLAHRALENLIKIIDQEM 401

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  ++S+P L S +LW ++GR++S G E++++ DR  +     PTHEE+ T +  + 
Sbjct: 402 SNIGGQKLSMPKLLSKELWEKTGRWESSGDELIKVKDRKGEEYCLAPTHEEIFTSMLANE 461

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             +  NLP   YQI  K+RDE+RPRFG++R REFLMKD YSFD +   ++ +YN +  +Y
Sbjct: 462 RIATNNLPMKLYQIGDKYRDEIRPRFGLLRGREFLMKDMYSFDKSVADAEETYNLVKTAY 521

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLG+    + A+SG IGG  SHEF ++ D GE  +             +     +
Sbjct: 522 HRIFSRLGVNYACVEADSGNIGGSTSHEFQIITDVGEDTIVSCSKCGHSANLEKADAECE 581

Query: 242 II 243
             
Sbjct: 582 PH 583



 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 7/249 (2%)

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           PI        +  +     +VF  +   +     +          +  V ++        
Sbjct: 633 PIDSKQKDALLAKSPNTPIRVFIDQSIQNNSNFEKIYPSMSSSLQSFTVGRFREVKEGDR 692

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            V  E   D+     +   RGIEVGHIF  GTKYS+P+ A  K ++G D  ++MG YGIG
Sbjct: 693 CVRPECTSDAERGLMKF-NRGIEVGHIFRLGTKYSVPLKANIKNSEGVDVPMEMGCYGIG 751

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK---VG 376
             R++AA++E+  D  GI+WP  VAP+K+ ++      +        ++Y  LSK   + 
Sbjct: 752 VSRLMAALVEAHKDLDGIVWPIQVAPYKLIILPYATELETENLRKATELYDYLSKEPSLT 811

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGS-KFVSDSKVEIKHRLTGIREDMSLEEV 434
             +  +D        +   A ++G P  + V   K       E++ R TG +   ++ E+
Sbjct: 812 NQIILEDRLDITFARRIKEATIIGVPYILFVTQSKTRDQDVYELEDRTTGEKSFFNMVEL 871

Query: 435 INYASHRFS 443
           + +   + S
Sbjct: 872 LYFFRFKLS 880


>gi|15605118|ref|NP_219903.1| prolyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|6686306|sp|P36431|SYP_CHLTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3328819|gb|AAC67990.1| Prolyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|297748523|gb|ADI51069.1| Prolyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749403|gb|ADI52081.1| Prolyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 581

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRMSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSA 300
               +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S 
Sbjct: 368 HCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSV 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D  
Sbjct: 428 GFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTE 486

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ 
Sbjct: 487 GEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIES 546

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G + ++S E ++++ S   
Sbjct: 547 R-SGEKCNVSPENLLDWCSKNL 567


>gi|213961830|ref|ZP_03390096.1| prolyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213955619|gb|EEB66935.1| prolyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 492

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/452 (15%), Positives = 159/452 (35%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A +      TG      P       + 
Sbjct: 17  NELVVKADLAESSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHTNAYFPLFVPKSYFE 76

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ +I  PT E ++   +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDPNEKGKLIVDPEAKLEEELIVRPTSEAIIWSTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T   +     KM    
Sbjct: 137 IQSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATKAEALEEAEKM---- 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++                                    F         I    T+ + 
Sbjct: 192 MNVYAT----------------------------------FVENFMAVPVIKGLKTESER 217

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +                                 + ++ G   + G  ++      
Sbjct: 218 FAGADETFCIEAM---------------------MQDGKALQAGTSHFLGQNFAKAFEVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-- 359
           +   +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++  
Sbjct: 257 YATKEGKQEYVWASSWGV-STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYKGEEQL 315

Query: 360 -VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
              R   + +   L K G  V +DD   +  G +F   +L G P+++ VG + + ++  E
Sbjct: 316 EKVRTHIQPLVEELKKRGISVKFDDRDTQSPGFKFHEYELKGVPVRLAVGQRDIENNTFE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E ++ ++++ +      + +  +
Sbjct: 376 VARRDTLTKETVTGDQIVAHIQQLLEDIQANI 407


>gi|224541864|ref|ZP_03682403.1| hypothetical protein CATMIT_01036 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525214|gb|EEF94319.1| hypothetical protein CATMIT_01036 [Catenibacterium mitsuokai DSM
           15897]
          Length = 479

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 146/413 (35%), Gaps = 67/413 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
            +  ++   S KG   + P G    + + + + +    TG   + +P L    L   E  
Sbjct: 27  RKAELMDYSSVKGFIIYRPYGYALWEQIQSYLDKRFKETGHQNVYMPMLIPESLLNKEKD 86

Query: 85  RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E   +     D  ++ +I  PT E +  + +   + SYR+LP  + Q     R
Sbjct: 87  HVEGFAPECAVVTKGGLDDLEEHLIVRPTSETLFCEHYAKIVNSYRDLPKKYNQWCSVVR 146

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E         +R FL    + +                                     
Sbjct: 147 WEKT-------TRPFLRGSEFLWQ------------------------------------ 163

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E   +  T E     +    D    +        +      E+     A  +
Sbjct: 164 --------EGHTIHATEEEARSETLMMRDIYEETAKELLAIPMLTGRKTEREKFAGAEET 215

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 + D          + ++ G   YFG  ++   + TF   D K  +V   S+G+ 
Sbjct: 216 YTIEALMHDG---------KALQSGTSHYFGQGFAKAFNMTFLDKDNKLKHVYQTSWGV- 265

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R++ A+I    D  G++ P  +AP ++ +I I+       +  ++I A+L   G  V 
Sbjct: 266 STRLLGAIIMVHGDDNGLVLPPRLAPTQVVIIPIQQKKAGVLEKADEIAAQLKAAGMRVS 325

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            D   +  G +F+ A++ G P+++ VG + + +    +  R  G++  M L+E
Sbjct: 326 VDASDKSPGWKFSEAEMRGIPVRIEVGPRDIENGHCVVVKRNDGVKTQMDLDE 378


>gi|313206166|ref|YP_004045343.1| prolyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312445482|gb|ADQ81837.1| prolyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|315023150|gb|EFT36163.1| prolyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
 gi|325336389|gb|ADZ12663.1| Prolyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 491

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 162/452 (35%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + +   + ++   TG      P      L+ 
Sbjct: 16  NELVVKADLAENSGVRGCMVIKPYGYAIWEKMRDELDKKFKETGHENAYFPIFVPKSLFE 75

Query: 82  ----------------ESGRYDSYGKE----MLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                              R  +  +     M+    + ++ +I  PT E ++ + +++ 
Sbjct: 76  AEEKNAEGFAKECAVVTHYRLKTDPENPQKLMVDPEAKLEEELIVRPTSEAIIWNTYKNW 135

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R E+R R   +R+ EFL ++ +    T   +K          
Sbjct: 136 VQSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEGH----TAHATKEEAIAETEQM 190

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L                             V AD  E         +   I S +  F  
Sbjct: 191 LN----------------------------VYADFAEK---FMAVPVVRGIKSPSERFAG 219

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I                               + ++ G   + G  ++      
Sbjct: 220 AEETYCIEAL------------------------MQDGKALQAGTSHFLGQNFAEAFDVK 255

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  Y    S+G+ + R++ A+I S  D  G++ P S+AP ++ ++ I   ++  
Sbjct: 256 FTNKEGKIEYAWATSWGV-STRLMGALIMSHSDDNGLVLPPSLAPIQVVIVPIFKGEEQL 314

Query: 362 R---DACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   +   ++ ++L  +G  V +D+    + G +FA  ++ G P+++ +G++ + +  VE
Sbjct: 315 KQIDEVAYELQSKLKALGISVKYDNRDTHKPGWKFAEYEMKGVPVRIAMGARDLENKTVE 374

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           I  R T  +E   L+ +  Y        +  +
Sbjct: 375 IARRDTLSKEVKPLDNIEVYIQELLEEIQKAI 406


>gi|329764876|ref|ZP_08256467.1| prolyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138662|gb|EGG42907.1| prolyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 480

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 147/420 (35%), Gaps = 71/420 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG+    P G    +++ +   E+ ++ G     +P L    L   E   +  +  E+  
Sbjct: 36  KGLIVLRPDGYSIWESLRSTFDEKFSKNGIRNGFLPILIPESLLGKEKKHFAGFNPEVFW 95

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E +   ++   I+S+R+LP          R E++     +R
Sbjct: 96  VTHSGENEVGDRLALRPTSETLAYTMYSKWIQSWRDLPLKINFWNTALRAEIKATKPFLR 155

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EFL ++ ++     E ++    K+    L I+ +     + +   +G           
Sbjct: 156 TSEFLWQEGHTVHAVQEEAEREVMKI----LEIYKKTVEDELAIPVITGK---------- 201

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E + F    +                                          + 
Sbjct: 202 ----KSEKEKFVGAVYT-----------------------------------------TT 216

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E+     + +++G   + G  +S+P    F   D  + +    S+G+ + R++ A+I  
Sbjct: 217 MESIMPDGKALQMGTSHFLGQNFSIPFEVKFADKDNVEQFAWQTSWGV-SWRLIGAMIMV 275

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-Q 387
             D KG++ P  VAP ++ ++ I   D           +I  +L      V  DD  E  
Sbjct: 276 HGDDKGLVLPPKVAPIQVVIVPIYKSDDARNIVFPKLNEIKEQLETKKIRVHVDDRNELT 335

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASHRFSNN 445
            G +F   +L G PL++ +G K +   ++ +  R    +  +   E+  I         +
Sbjct: 336 PGYKFNDWELKGVPLRIEIGPKDIEKQQIVLAKRYNREKISLGFNEIERIGTILEEIQKD 395


>gi|158340035|ref|YP_001521204.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158310276|gb|ABW31891.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 439

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/459 (16%), Positives = 157/459 (34%), Gaps = 62/459 (13%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + F  ++ +   + ++A H+ + R        +HS G+  W P G +   ++   +R+  
Sbjct: 18  RVFYYLITQTTGETKMADHRELARDMDLFHFEEHSPGMVFWHPQGLRLFRSIEDFMRQVY 77

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDK--------AMIYGPT 109
              G  E+  P   +  LW  S  ++ + + M  +    AD +D+             P 
Sbjct: 78  QGHGFEEVRSPIALNRSLWERSRHWEKFRQGMFVVGSVEADIDDESALSVISPDYALKPM 137

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
                  I++S  +SYR  P    +  +  R+EL     G MR R+F+  DA+ F     
Sbjct: 138 SCPAHIAIYQSRKRSYRENPMRLMEFGICHRNELSGTLSGCMRLRQFVQDDAHIF-CRAS 196

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +   +       +++   G     ++    P     S      A++   +   S    
Sbjct: 197 DVQREISNFLNMVQQVYVAFGYDQFSLQISLRPEQRLGSDHLWDQAESVLVKAVQSLGHS 256

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
               P                                    +    K   +   ++G  +
Sbjct: 257 YKLAP---------------------------------NEGAFYGPKLEISLQDQLGRSW 283

Query: 289 YFGT---KYSLP--MSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             GT    ++LP      F    G+ +  V +    +G++     ++   H G   IW  
Sbjct: 284 QCGTIQVDFNLPQVFELAFVNELGELERPVMLHQAILGSLERWIGILLEHHSGALPIW-- 341

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
             AP ++++ +I           E I+ RL ++G  V   +    I  +         PL
Sbjct: 342 -AAPTQVAVASISNK---ASAWAETIFFRLRQLGARVELHNQNRTISKKIRGLSKRKIPL 397

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             IVG +     ++ ++      +++MSL E+    +  
Sbjct: 398 IAIVGEQEAMSQRLNLRCLGALKQQEMSLAELEQKLADL 436


>gi|296436840|gb|ADH19010.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/11222]
          Length = 581

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSA 300
               +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S 
Sbjct: 368 HCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSV 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D  
Sbjct: 428 GFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTE 486

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++Y  L+  G +   +D  E++G +   +DLLG P ++I+G  F S   +EI+ 
Sbjct: 487 GEATALQLYQSLNTEGFEPLLNDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIES 546

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G + ++S E ++++ S   
Sbjct: 547 R-SGEKCNVSPENLLDWCSKNL 567


>gi|296435914|gb|ADH18088.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437774|gb|ADH19935.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140274|gb|ADH97032.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 581

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSA 300
               +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S 
Sbjct: 368 HCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSV 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D  
Sbjct: 428 GFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTE 486

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ 
Sbjct: 487 GEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIES 546

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G + ++S E ++++ S   
Sbjct: 547 R-SGEKCNVSPENLLDWCSKNL 567


>gi|218282600|ref|ZP_03488838.1| hypothetical protein EUBIFOR_01424 [Eubacterium biforme DSM 3989]
 gi|218216471|gb|EEC90009.1| hypothetical protein EUBIFOR_01424 [Eubacterium biforme DSM 3989]
          Length = 564

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/224 (43%), Positives = 143/224 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F   L+EN +D +  S  L++R GMI + S GIY  +P+G+K L  V  IIREE
Sbjct: 1   MKLSQSFFYTLRENAKDEDSVSSNLLVRAGMIKKCSNGIYMIMPMGKKVLSKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A E+ +P L   D++V+SGR +++G  M  L+DR +K  + GPTHEE+       
Sbjct: 61  MDAKDAQELLMPALIPEDVYVQSGRREAFGSNMFSLSDRYNKRYVLGPTHEELFAVASSM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY++ P+  YQIQ K+RDE RPR+G++R REF+MKDAY+FD+   G   +YNKM+ +
Sbjct: 121 DGKSYKDFPYNLYQIQTKYRDETRPRYGLIRVREFIMKDAYTFDVDEAGLDVAYNKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y RI  RLGL+   ++A++G +GG LS E+  L+  GE  V   
Sbjct: 181 YCRIMDRLGLEYKIVKADTGAMGGLLSEEYQALSSIGEDVVVGC 224



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 1/223 (0%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           V+  +            +  D    N   + +T    A      E         K     
Sbjct: 342 VYMDRQIKHMKNFIVGANQSDRHIKNVNCKDFTPVEVADLCQVKEGDICPKCGKKLTFQH 401

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG++F  GTKYS  M+  +  A+ +   V MGSYGIG  R +AAV +  HD  GI W
Sbjct: 402 GIEVGNLFKLGTKYSKSMNLYYTDANNQLQPVWMGSYGIGLERCMAAVADQHHDDFGIKW 461

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +APF+++++ +   D+        +Y    +   DV  DD  E+ G +F   +L+G 
Sbjct: 462 PVEIAPFRLAIVPVSLKDEEQVKIANDLYEYCKEHKFDVILDDRNERPGVKFKDMELIGI 521

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P ++ VG + V + K+E   R TG + ++++E+V +     F+
Sbjct: 522 PYRITVG-RGVKEGKLEWTDRYTGEKSEIAIEDVYSEIEKVFA 563


>gi|150400672|ref|YP_001324438.1| prolyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|171460849|sp|A6UTK4|SYP_META3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150013375|gb|ABR55826.1| prolyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 456

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/432 (20%), Positives = 163/432 (37%), Gaps = 72/432 (16%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H ++   G+  +    KG   +LP G K        IR+  + +   E   P L   DL 
Sbjct: 9   HNILETAGIYDLRYPLKGCGVYLPYGFKIRRYAFEAIRDMLDESNHDEALFPMLIPEDLL 68

Query: 81  VESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            + G     + +E+  +        D  +   PT E  +  + +  IK + +LP   YQI
Sbjct: 69  AKEGEHIKGFEEEVYWVTHGGTTPLDVKLALRPTSETPIYHMMKLWIKVHTDLPIKIYQI 128

Query: 136 QLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E +    ++R RE    K+A++   T E ++        + L I+         
Sbjct: 129 VNSFRYETKHTRPLIRLREIMTFKEAHTAHSTSEEAEAQVQ----TALNIYKT------- 177

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                                                       F D + + +IV Q   
Sbjct: 178 --------------------------------------------FFDRMGVPTIVSQRPE 193

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                   +        P+ K +     ++G +   G  ++      F+  +G   Y   
Sbjct: 194 WDKFPGADYTMAFDTIFPDGKTM-----QIGTVHNLGQHFAKTFELEFETPEGGKDYAYQ 248

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARL 372
             YGI + R++A++I    D KG+I P  VAP +I +I +  K  +++  +  ++IY  L
Sbjct: 249 TCYGI-SDRIIASIIALHGDEKGLILPPEVAPHQIIIIPLLFKGKEEIAMNKAKEIYKSL 307

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  DD   + G +F   +L G P+++ +G + + ++K+ I  R TG +  +  +
Sbjct: 308 KNT-YRVKLDDRDIRPGKKFNDWELKGAPIRIELGPRDIENNKLTIYRRDTGEKFQIDED 366

Query: 433 EVINYASHRFSN 444
            ++N  +    +
Sbjct: 367 NLLNELNTLIDS 378


>gi|308189939|ref|YP_003922870.1| threonine--tRNA ligase [Mycoplasma fermentans JER]
 gi|319777220|ref|YP_004136871.1| threonyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|238809889|dbj|BAH69679.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624681|gb|ADN68986.1| threonine--tRNA ligase [Mycoplasma fermentans JER]
 gi|318038295|gb|ADV34494.1| Threonyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 582

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 149/436 (34%), Gaps = 36/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            D +   H+ + +   I         G   WL  G    + +  ++ +   + G  E+  
Sbjct: 176 ADRKERDHRKLGKEMKIFAMHPLCGQGFPIWLEDGMYIHNEIKNLVLKMDRKYGFTEVLT 235

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P   S DL+  SG    Y  +M       ++ +I  P         +    +SYR+LP  
Sbjct: 236 PHFGSEDLYKTSGHLAHYKDDMFAPLVIENERLIPRPMTCPHHIVCYNLEKRSYRDLPIR 295

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + +    +R E      G+ R R  L+ + + F +  +  +     M+           +
Sbjct: 296 YSEQSQLYRYEKSGALTGLERVRGMLLTEGHLF-VREDQIEQEIKSMYQLIEETLKIFNI 354

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                         D+S+  + L D  + + + + + M            D + +     
Sbjct: 355 --------------DISYISLSLRDKNDKEKYFNDNKMWNSAEKMLKKALDDMGVK--YT 398

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD- 309
                 A      + ++  +L     VS   ++                 T+   +GK+ 
Sbjct: 399 TVVGEAAFYGPKIDIQIDTALGHEITVSTIQLDFLQP--------KNFDITYTDKNGKEA 450

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    IG      A++     G    W   +AP +I++I +  ++    D    I+
Sbjct: 451 RPVMIHRGLIGTYERFVAILLEQTKGNLPFW---LAPKQITIIPVNLNEN--LDYSRNIF 505

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL      V  DD  E++  +   A +     QVI+G+    D  +  +       + +
Sbjct: 506 NRLWNCNFRVKIDDRDERLNKKIREAQMSKSKYQVILGANEEKDKTISYREYGKEDTKTV 565

Query: 430 SLEEVINYASHRFSNN 445
           ++EE IN  +   +N 
Sbjct: 566 TVEEFINILTKLRNNY 581


>gi|256820371|ref|YP_003141650.1| prolyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581954|gb|ACU93089.1| prolyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 492

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 157/449 (34%), Gaps = 86/449 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A +      TG      P       + 
Sbjct: 17  NELVVKADLAESSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHTNAYFPLFVPKSYFE 76

Query: 82  ----------------ESGRYDSYGKE----MLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                              R  +   E    M+    + ++ +I  PT E ++ + +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKADPNEKGKLMVDPEAKLEEELIVRPTSEAIIWNTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T   +     KM    
Sbjct: 137 IQSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATKAEAIEEAQKM---- 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++       + +    G      S  F    DT   +                     
Sbjct: 192 MNVYADFVENFMAVPVIKGV--KSESERFAGADDTYCIEAL------------------- 230

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                                                 + ++ G   + G  ++      
Sbjct: 231 ----------------------------------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-- 359
           +   +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I    +  
Sbjct: 257 YVSKEGKQEYVWASSWGV-STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYKGAEQL 315

Query: 360 -VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
              R   + +   L K    V +DD   +  G +F   +L G P+++ VG + +  +  E
Sbjct: 316 EKVRSHIQPLIEELKKHNISVKFDDRDTQSPGFKFHEYELKGIPVRLAVGQRDIEHNTFE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +  R T  +E ++ ++++ +      N +
Sbjct: 376 VARRDTLTKETVAGDQIVAHIQQLLENIQ 404


>gi|328869252|gb|EGG17630.1| prolyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 642

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/226 (43%), Positives = 146/226 (64%), Gaps = 1/226 (0%)

Query: 3   RSKYFLPILQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RSK F+P++++ P D E++ S  LM +TGMI + S G+Y  LPL Q+A++N+  II EE 
Sbjct: 77  RSKLFIPVVRDQPMDKEMSQSQLLMQKTGMIRRASLGMYMTLPLAQRAMENLIKIIDEEM 136

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  ++++P L S DLW ++GR+++ G E++++ DR ++     PTHEE+ T +  + 
Sbjct: 137 QGVGGQKLTMPLLVSKDLWEKTGRWETTGAELIKVKDRKEEEYCLAPTHEEIFTSLVANE 196

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             S  N P   YQI  K+RDE+RPRFG++R REFLMKD YSFD T   +  +YN +  +Y
Sbjct: 197 RLSNSNFPLRLYQIGNKYRDEIRPRFGLVRGREFLMKDLYSFDQTRVEAVATYNDIKGAY 256

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            R+F R+GLK   + A+SG IGG +SHEF VL  +GE  V   +  
Sbjct: 257 HRVFDRVGLKYACVEADSGNIGGSMSHEFQVLTGSGEDTVVSCECC 302



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +    +GIEVGHIFY GTKYS  + A  K  +GK+  ++MG YGIG  R++AA+IES  D
Sbjct: 464 ELKLQQGIEVGHIFYLGTKYSSKLGANMKDKNGKNQPIEMGCYGIGVSRLLAAMIESKRD 523

Query: 335 GKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK---VGCDVFWDDM-GEQIG 389
            +GI+W   VAP+K  +I      ++   ++ E +Y  L +   +   +  ++     IG
Sbjct: 524 DRGIVWSKCVAPYKAIIIPFSDQRNRGSYESAEHLYDLLIRDPFLRNQIVLENRLDMSIG 583

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS---KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +   A+L+GFP  + V +     +     E++ R  G +   +  E+ ++  ++F   
Sbjct: 584 KRINEANLIGFPYLIFVNNNASKKNGEDVFEVEDRDNGQKSYFTAFELYHFFRYQFEQK 642


>gi|255311199|ref|ZP_05353769.1| prolyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317500|ref|ZP_05358746.1| prolyl-tRNA synthetase [Chlamydia trachomatis 6276s]
          Length = 581

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSA 300
               +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S 
Sbjct: 368 HCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSV 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D  
Sbjct: 428 GFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTE 486

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ 
Sbjct: 487 GEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIES 546

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G + ++S E ++++ S   
Sbjct: 547 R-SGEKCNVSPENLLDWCSKNL 567


>gi|308234806|ref|ZP_07665543.1| threonyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
 gi|311114574|ref|YP_003985795.1| threonine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946068|gb|ADP38772.1| threonine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 676

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/452 (14%), Positives = 138/452 (30%), Gaps = 51/452 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      ++ L +    +   G+  + P G   ++ +    RE+  +     
Sbjct: 247 RMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREQHRKHHYSF 305

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 R        P +  +   
Sbjct: 306 VQTPHITKGGLYETSGHLQWYKDGMYPPMKLDEERDENGNVTRQGADYYLKPMNCPMHNL 365

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+S  +SYR LP   ++    +R E      G+ R R     D++ +  T E  +    
Sbjct: 366 IFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIY-CTREQMRDELK 424

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    L +    GL    +   +        S E    A     +V           P 
Sbjct: 425 SLLNFVLGLLKDFGLNDFYLELSTKDEHKFVGSDEIWEEATNTLAEVAKESGLELVDDPG 484

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                 A      + +  D++    +VS   ++    F    ++
Sbjct: 485 --------------------GAAFYGPKISVQARDAIGRTWQVSTIQLD----FNLPERF 520

Query: 295 SLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  +  ADG     V +     G++    A++   + G    W   +AP +++ + 
Sbjct: 521 ----KLEYIAADGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAW---LAPVQVTGVP 573

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +           +K  + L +       D   ++ G +   A     P  +I G + V++
Sbjct: 574 VA---DEFAPHLQKFISDLEENMVRCEMDSSDDRFGKKIRNASKSKVPFTLIAGEEDVNN 630

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V  + R       + +E+   +        
Sbjct: 631 NAVSFRFRDGSQLNGVPVEQAKEWILSIIKQR 662


>gi|167747292|ref|ZP_02419419.1| hypothetical protein ANACAC_02006 [Anaerostipes caccae DSM 14662]
 gi|167653270|gb|EDR97399.1| hypothetical protein ANACAC_02006 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 155/427 (36%), Gaps = 68/427 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           + +  +I   S KG     P G    +N+  ++  +   TG   +++P      L   E 
Sbjct: 26  VKKAELIEYSSVKGCMILRPNGYAIWENIQKVMDAKFKETGVENVAMPMFIPESLLEREK 85

Query: 84  GRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +      + ++ +   PT E +  D + + I+SYR+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTHGGNKKLEERLCVRPTSETLFCDFYSNIIQSYRDLPKLYNQWVSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E   R   +R+ EF  ++ ++   T +       +  V  L ++              
Sbjct: 146 RWEKSTR-PFLRTSEFYWQEGHTAHATAD----EAEERTVQMLNMYAD------------ 188

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                 FC +      +  + T+ +     N+            
Sbjct: 189 ----------------------FCEQYLAIPVVKGQKTEKEKFAGANATYTIEAL----- 221

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G    FG  ++      +   + K  YV   S+G+
Sbjct: 222 ----------------MHDGKALQSGTSHNFGDGFAKAFDIQYTDKNNKLQYVHQTSWGM 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + R++ A+I    D  G++ P  +AP +  ++ I    +   +  E+I   LSK    V
Sbjct: 266 -STRIIGAIIMVHGDDSGLVLPPKIAPVQTMIVPIMQKKEGVLEKAEEIRECLSK-NYKV 323

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +F+  ++ G P ++ +G K +  ++  I  R T  +  +SL+E+ +  S
Sbjct: 324 KVDDSDKSPGWKFSEQEVQGIPTRIEIGPKDIEKNQAVIVRRDTREKIFVSLDEIESKLS 383

Query: 440 HRFSNNR 446
                 +
Sbjct: 384 EVLDQMQ 390


>gi|237802818|ref|YP_002888012.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804740|ref|YP_002888894.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273040|emb|CAX09953.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274052|emb|CAX10846.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
          Length = 581

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSA 300
               +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S 
Sbjct: 368 HCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSV 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F+  +G      MG+YGIG  R +AA IE   D KG++WP +V PF I+++     D  
Sbjct: 428 GFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVTPFSITIL-YNGGDTE 486

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ 
Sbjct: 487 GEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIES 546

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G + ++S E ++++ S   
Sbjct: 547 R-SGEKCNVSPENLLDWCSKNL 567


>gi|32491346|ref|NP_871600.1| prolyl-tRNA synthetase [Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis]
 gi|81844435|sp|Q8D1V9|SYP_WIGBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25166553|dbj|BAC24743.1| proS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 561

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/288 (39%), Positives = 165/288 (57%), Gaps = 2/288 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+L  L+++P + E  SH+LM+R+GMI + S G+Y+WLP G + L  +  IIR E
Sbjct: 1   MRTSQYYLATLKDSPSETEGISHRLMIRSGMIRKLSSGLYAWLPTGFRVLKKIENIIRHE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q + +W  SGRY+ YG E+L+  DR  K  +  PTHEEV++ I   
Sbjct: 61  MNKIGAIEILMPIIQPSLIWKNSGRYEEYGLELLKFYDRKKKQFVLAPTHEEVISKIILK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I   +  P  FYQI  KFRDE RPR G MRS+EF+MKD+YSF L  +  + +Y+ M  +
Sbjct: 121 EINFNKVFPINFYQIYSKFRDEARPRCGTMRSKEFVMKDSYSFHLNEKSLEKTYHIMQET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF+RL L    +RA++G IGG +SHEF    +   + V  +     F   +    F 
Sbjct: 181 YKKIFNRLNLDYFVIRAKTGKIGGFISHEFHAYYNK--SDVLINSYKKIFDKNNIINKFK 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             I + +++E        TSD+  +   D     K +    IE  H F
Sbjct: 239 KKIEIKNLIEINAEDILLTSDLAKKFNIDIKQIIKILLVHSIEKNHPF 286



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 93/160 (58%), Gaps = 2/160 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE+GHIF  G KYS P++ +    D     + MG YGIG  R+V+  IE ++D  GIIW 
Sbjct: 396 IEIGHIFQLGDKYSKPLNYSLL-KDYNKKKIFMGCYGIGISRLVSTYIEQNYDSNGIIWN 454

Query: 342 DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           + +APFK+++I I  +     ++  E+IY +L  +  DV + D  E+ G  F+  +L+G 
Sbjct: 455 EEIAPFKVAIIPININFSIKVKNFSEEIYYKLCNLKIDVLFYDNVERPGIMFSNIELIGI 514

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           P  +I+  K + +S +E K+R+TG +  ++ + + ++   
Sbjct: 515 PHILIISDKNLKNSIIEYKNRITGDKLMINYKYIFDFLLQ 554


>gi|159489562|ref|XP_001702766.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280788|gb|EDP06545.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 579

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 139/437 (31%), Gaps = 45/437 (10%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIREEQNR 63
           L   ++   +A    H+ +   L    I + S G +  W P G      + +  +E   +
Sbjct: 174 LAAFKQLKEEAAKRDHRKLGAELNLFSIQESSGGGLVYWHPPGAMVRHLIESFWKELHLQ 233

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +        SG        +       D+     P +      +++    
Sbjct: 234 RGYQLVYSPHIA-----KVSGACVCVCVCVCVCVCVEDETYQLRPMNCPFHVSVYKDGYY 288

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++   +R E      G+ R R F   DA+ F L P         +     
Sbjct: 289 SYRDLPLRLAELGTVYRYERSGTMHGLFRVRGFTQDDAHIFCL-PNQITTEIKGVLDLVE 347

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    G     +   + P     S E    A+    +   +K +               
Sbjct: 348 EILGTFGFNDYEVNLSTRPEKSVGSDEIWTTAEAALVEALNAKGWKYQVDAGGG------ 401

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + S   ++      F   Y       F
Sbjct: 402 --------------AFYGPKIDIKIRDAIGRKWQCSTVQLDFNLPERFDMHY-------F 440

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             A  K   + +     G++     ++  ++ G   +W   +AP ++ L+ +  +     
Sbjct: 441 DDAAAKQRPIMIHRAIFGSLERFFGILIENYMGAFPLW---LAPVQVRLLTVNDN---LA 494

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    + A++ K G  V        I      A+    P+  +VG+K    + + ++   
Sbjct: 495 EYAHGVAAQMRKAGVRVEV-VGQASIAKLIRNAEKAKTPVICVVGNKEAESNSLAVRLYG 553

Query: 423 TGIREDMSLEEVINYAS 439
                 + +++VI+  +
Sbjct: 554 GKELGALPVQDVISRVA 570


>gi|295100007|emb|CBK89096.1| prolyl-tRNA synthetase, family II [Eubacterium cylindroides T2-87]
          Length = 564

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/227 (40%), Positives = 140/227 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   L+EN +D +  S  L++R GMI + S G+Y  +P+G+K L  +  I+REE
Sbjct: 1   MKLSKSFFYTLRENAKDEDSVSSNLLVRAGMIKKSSNGMYMIMPMGKKVLAKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A E+ +P L   +++++SGR + +G  M  + DR  K  + GPTHEE+       
Sbjct: 61  MDAKDAQELLMPALIPEEVYIKSGRREVFGSNMFTMNDRYMKRYVLGPTHEELFAVAASM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAY+FD+   G   +Y KM+ +
Sbjct: 121 DGKSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYTFDIDEAGLDEAYAKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R+ L+   ++A++G +GG LS E+  ++  GE  V   +  
Sbjct: 181 YCRIFDRMELEYKIVKADTGAMGGLLSEEYQAISGIGEDIVVGCEGC 227



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 3/183 (1%)

Query: 263 HNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              K  D  P   +      GIEVG++F  GTKY+  M+  +  A+ +   V MGSYGIG
Sbjct: 382 CQVKEGDICPVCGKPLTFQHGIEVGNLFKLGTKYAQSMNLYYTDANNQLQPVWMGSYGIG 441

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R +AA++E  HD KGIIWP  VAPF +S++ I   D+   +    +Y   +K    V 
Sbjct: 442 LERCMAAIVEQHHDDKGIIWPKEVAPFILSIVPISLKDEKQMEIANDLYNYCTKNKYSVL 501

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+ G +F   +L+G P ++ VG K   +  +E  +R TG +E++S++ + +    
Sbjct: 502 LDDRNERPGVKFKDMELIGIPYRITVGRK-AQEGILEFSNRYTGEKEEVSIDSIKSMIDE 560

Query: 441 RFS 443
            + 
Sbjct: 561 LYK 563


>gi|312194258|ref|YP_004014319.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311225594|gb|ADP78449.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 468

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 151/453 (33%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  F    Q+    AE+A +  +  + +I           P G    + + A +     
Sbjct: 7   RSDDFPRWYQDVIAKAELADNGPVRGSMVIR----------PYGYSLWERMQADVDARIK 56

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             GA+    P       L  E+   + +  E+  +        ++ ++  PT E V+ + 
Sbjct: 57  AAGAVNAYFPLFIPESYLRREAEHVEGFSPELAVVTHGGGKELEEPVVVRPTSETVIGEY 116

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                +SYR+LP    Q     R ELRPR   +R+ EFL ++ ++       +     ++
Sbjct: 117 MAKWTQSYRDLPLLLNQWANVVRWELRPRL-FLRTSEFLWQEGHTAHADGPDAAAYARRI 175

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++       + + A    +G     E    A    T                  
Sbjct: 176 A---LEVYQDF---MVSVLAMPVFVGRKTRKERFAGAINTLT------------------ 211

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                                              E      + +++      G  ++  
Sbjct: 212 ----------------------------------CEGMMGDGKALQMATSHELGQNFARA 237

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               + GADG  H     S+G  + R+V  +I +  D  G+  P  +AP ++ ++ ++  
Sbjct: 238 FDIDYLGADGARHLAWTTSWG-SSTRMVGGLIMAHGDDAGLRVPPRLAPTQVVVLPVR-D 295

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D+       +I   L   G     D   G   G +    +L G P++V VG + ++   V
Sbjct: 296 DEKVVATATQIADALKAAGVRATLDARPGLSFGRRVTDWELKGAPVRVEVGPRDLAVGNV 355

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R TG +  + L E          + +  L
Sbjct: 356 TLARRDTGEKITVPLAEAAARVPALLDDVQAGL 388


>gi|291543417|emb|CBL16526.1| prolyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 485

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 150/432 (34%), Gaps = 71/432 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S KG     P      +N+  I+      TG   + +P      L   E 
Sbjct: 26  VKKAELIEYTSVKGCMVIRPYAYAIWENIQHILDGMFKATGHENVCMPMFIPESLLQKEK 85

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     ++ +  +   PT E +  + + + + SYR+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTMGGSEKLEDRLCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E         +R FL    + +         +  +      R+ +        + A+ 
Sbjct: 146 RWEKT-------TRPFLRSREFLWQ-EGHTIHATAQEAIEETERMLN--------VYAD- 188

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                 FC        I    T+ D             A YA  
Sbjct: 189 ----------------------FCEHSLAMPVIKGRKTESDKFAGA-------VATYAIE 219

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           + +H+               + ++ G   YFG  ++      +   + K       S+G+
Sbjct: 220 ALMHD--------------GKALQAGTSHYFGDGFAKAFDIEYTDKENKRVNPHQTSWGV 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ A+I +  D  G++ P +VAP +  ++ I  H +   +   ++   L   G  V
Sbjct: 266 T-TRLIGAIIMTHGDNSGLVLPPAVAPIQAVIVPIAQHKEGVLEKANQLAEALKAQGIRV 324

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE----VI 435
             DD     G +FA  ++ G P+++ +G K +  S+  +  R  G ++ ++L+E    ++
Sbjct: 325 KLDDSDNSPGWKFAEYEMKGVPVRIEIGPKDIEQSQCIVATRYNGEKQPVALDEAYGTLV 384

Query: 436 NYASHRFSNNRP 447
                      P
Sbjct: 385 QTVQQLLDKTIP 396


>gi|255348758|ref|ZP_05380765.1| prolyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503298|ref|ZP_05381688.1| prolyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255506977|ref|ZP_05382616.1| prolyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|407685|gb|AAA23161.1| aminoacyl-tRNA synthetase [Chlamydia trachomatis]
 gi|289525435|emb|CBJ14912.1| prolyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296434987|gb|ADH17165.1| prolyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438707|gb|ADH20860.1| prolyl-tRNA synthetase [Chlamydia trachomatis E/11023]
 gi|745528|prf||2016314B AA-tRNA synthetase
          Length = 581

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNVNKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR ++AM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENEAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 7/225 (3%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           ET    +           +    +      +        A   D+  +            
Sbjct: 350 ETTRLMTNFICANNQKDVHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPY-----E 404

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +G+EV HIF  GT+Y+   S  F+  +G      MG+YGIG  R +AA IE   D KG
Sbjct: 405 IFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKG 464

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++WP +VAPF I+++     D        ++Y  L+  G +   DD  E++G +   +DL
Sbjct: 465 LVWPLAVAPFSITIL-YNGGDTEGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           LG P ++I+G  F S   +EI+ R +G + ++S E ++++ S   
Sbjct: 524 LGIPYKLIIGKSFQSTGLLEIESR-SGEKCNVSPENLLDWCSKNL 567


>gi|166154604|ref|YP_001654722.1| prolyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155479|ref|YP_001653734.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335871|ref|ZP_07224115.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|226699129|sp|B0B7W3|SYP_CHLT2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699130|sp|B0BC28|SYP_CHLTB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|165930592|emb|CAP04089.1| prolyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931467|emb|CAP07043.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 581

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSA 300
               +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S 
Sbjct: 368 HCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSV 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D  
Sbjct: 428 GFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITIL-YNGGDTE 486

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ 
Sbjct: 487 GEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIES 546

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G + ++S E ++++ S   
Sbjct: 547 R-SGEKCNVSPENLLDWCSKNL 567


>gi|76789124|ref|YP_328210.1| prolyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|114152182|sp|Q3KLW0|SYP_CHLTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76167654|gb|AAX50662.1| prolyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
          Length = 581

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSA 300
               +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S 
Sbjct: 368 HCKHMNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSV 427

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F+  +G      MG+YGIG  R +AA IE   D KG++WP +V PF I+++     D  
Sbjct: 428 GFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVTPFSITIL-YNGGDTE 486

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+ 
Sbjct: 487 GEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIES 546

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G + ++S E ++++ S   
Sbjct: 547 R-SGEKCNVSPENLLDWCSKNL 567


>gi|71032103|ref|XP_765693.1| prolyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68352650|gb|EAN33410.1| prolyl-tRNA synthetase, putative [Theileria parva]
          Length = 683

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 147/434 (33%), Gaps = 67/434 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           ++++R+ MI  +   G Y +LP      +  N    ++  + G      P   + + L  
Sbjct: 215 QVIVRSEMIEYYDISGCYIFLPASYFIWEIFNEWFNKQIKQRGVDNCYFPMFVTKERLEA 274

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D      +   PT E +M   F   I+SYR+LP    Q   
Sbjct: 275 EKTHLEGFSPEVAWVTRNGDVDFPDPIAIRPTSETIMYPEFSKWIRSYRDLPLKLNQWNS 334

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +RSREFL ++ ++   T             +   ++  L L       
Sbjct: 335 VVRWEFKQPTPFIRSREFLWQEGHTAHSTE----------KEALDTVYEMLDL------- 377

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                   F  +      I    ++ +                A
Sbjct: 378 ---------------------YSKFYEEYLSVPVIKGVKSENEKFAGSKMTTSLEAFVPA 416

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                 RG++       GT +S      ++  +G+   V   S+
Sbjct: 417 NG--------------------RGVQAATSHLLGTTFSDMFDIKYEDEEGEKRKVHQTSW 456

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           G    R +  +I    D +G++ P  VA  ++ ++ I             ++Y  L++ G
Sbjct: 457 GFT-TRSIGIMIMVHGDDRGLVVPPRVAKTQVVIVPILTKTADQVISRVNELYKLLTESG 515

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V  DD  G   G +F   +L G PL++ VG+K V ++ V +  R    + D+ LE + 
Sbjct: 516 FRVKLDDRRGYTPGFKFNHWELRGVPLRLEVGAKDVENNTVRLVRRDNFAKADVPLENLT 575

Query: 436 NYASHRFSNNRPVL 449
                     +  L
Sbjct: 576 TTIQQLLDQIQNTL 589


>gi|152996743|ref|YP_001341578.1| tRNA synthetase class II (G H P and S) [Marinomonas sp. MWYL1]
 gi|150837667|gb|ABR71643.1| tRNA synthetase class II (G H P and S) [Marinomonas sp. MWYL1]
          Length = 395

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 154/434 (35%), Gaps = 52/434 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +     + +L L      Q + G+  W P G     N+   +R    + G  E+  P L 
Sbjct: 2   KTHRELAEQLDLF--HSEQQAPGMLFWHPNGWHLFQNIQEHMRRCYRQYGFKEVRTPQLM 59

Query: 76  SADLWVESGRYDSYGKEMLRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +LW  SG  D Y ++M    ++N D+     P        +++  + SYR+LP   ++
Sbjct: 60  KKELWHISGHMDMYAQDMFFGGEQNGDQEYALKPMSCPAHILMYKRGVHSYRDLPLKLFE 119

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             L  R+E      G +R R+F   DA+ F       K    +      +I++  G +++
Sbjct: 120 FGLVHRNESSGSLNGCLRLRQFTQDDAHVFCAWS-QVKQEVGQFLQRAKQIYNDYGYQAL 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  + P            A+    +                                 
Sbjct: 179 EVKISTQPEKALGDDASWRRAEDILKEA-------------------------------- 206

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGK 308
              A       +    +    K   A    VG I+  GT    ++LP      F    GK
Sbjct: 207 -CQAENVPFDIQVGEGAFYGPKIELALQDAVGRIWQCGTIQLDFNLPDRFELEFDNEQGK 265

Query: 309 -DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +  + +     G++     ++     G   + P+ + P  ++L+++        D   +
Sbjct: 266 AEQPIILHQAVYGSIERWIGILLEVSQG---VLPEWIHPQPVALVSVN---DSVLDYANQ 319

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L + G +V  +     +G +   +  L  P  +I+G +     K+ I  R     E
Sbjct: 320 LRAELEQQGINVSCEFGDHSVGRKIKRSFELKIPNIIIIGEQEAQAGKLTI--RRGKHIE 377

Query: 428 DMSLEEVINYASHR 441
            ++ EE+I++   +
Sbjct: 378 IINQEELISFLKTK 391


>gi|15806285|ref|NP_294990.1| prolyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|81858880|sp|Q9RUW4|SYP_DEIRA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6459012|gb|AAF10837.1|AE001974_2 prolyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 499

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 156/448 (34%), Gaps = 79/448 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S  F     E  + A++A +  +    ++           P G    +N+   + +   
Sbjct: 25  QSVDFNDWYNEVVKKADLADNSPVAGAMVVR----------PYGSALWENIQRWLDDRFK 74

Query: 63  RTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
            +G   +  PTL   +    E+   + +  E+  +     +   +  +  PT E ++  +
Sbjct: 75  ASGHESLIFPTLIPMNFIMKEADHVEGFAPELFTVNKIGTEELAEPYVMRPTSETIIGHM 134

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   + SYR+LPF  YQ    FR ELR     +R+ EF   + ++       ++    + 
Sbjct: 135 WSGWLNSYRDLPFLHYQWGSVFRAELR-TKAFLRTSEFFWHEGHTAHADEAEARAEVRQQ 193

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                      DL HEF                           
Sbjct: 194 L--------------------------DLYHEFC-------------------------- 201

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                   + +           S+     +     E      + ++ G   Y G  +S  
Sbjct: 202 -------RDVLALPVVRGEKTASERFAGAVATYSIEGMMRDGKALQSGTSHYLGQNFSRA 254

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               ++  + K+ +    S+ I + R++ A+I +  D  G++ P  +AP ++ +I +   
Sbjct: 255 FDVKYQTREQKEEFAHTTSWAI-SSRIIGAIIMTHGDDSGLMMPPRIAPIQVVVIPVGRK 313

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           D         EK+ A L   G  V  D       G ++   +L G P+++ +G + +   
Sbjct: 314 DNFDQMVQEGEKLAAELRAQGLRVKVDGRDGVTNGFKYNDWELKGVPVRIELGPRDLESG 373

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            + +K+R +  +E +   E ++  S R 
Sbjct: 374 VLVVKNRHSEDKETLPRAEAVSGMSARL 401


>gi|150403636|ref|YP_001330930.1| prolyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|171472898|sp|A6VK03|SYP_METM7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150034666|gb|ABR66779.1| prolyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 460

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 167/459 (36%), Gaps = 87/459 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEV 113
           +  + TG  E   P L   +L  + G     +  E+  +        +  +   PT E  
Sbjct: 46  KLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRPTSETT 105

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKH 172
           M  + +  IK + +LP   YQ+   FR E +    ++R RE +  K+A++   T E    
Sbjct: 106 MYYMMKQWIKVHTDLPLKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHATKEDCDA 165

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +    Y                      G+   E  V           SK       
Sbjct: 166 QIKEALNLY----------------------GEFFDEICVP-------YIISKRPEWDKF 196

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P  +                               FD++  +     + +++G +   G 
Sbjct: 197 PGADY---------------------------TMAFDTIYPDG----KTMQIGTVHNLGQ 225

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++      F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI
Sbjct: 226 NFAKTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLI 284

Query: 353 NI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  K  +++  +  +++ + L      V  DD   + G ++   ++ G PL++ +G + 
Sbjct: 285 PLLFKGKEEIVMEKIKELNSTLKSE-FRVHLDDRDIRPGRKYNDWEIKGVPLRIELGPRD 343

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + +  I  R TG +  +    ++       S  +  L
Sbjct: 344 IENGQALIVRRDTGEKITVEYSNILEEVEKIVSMYKENL 382


>gi|116179548|ref|XP_001219623.1| hypothetical protein CHGG_00402 [Chaetomium globosum CBS 148.51]
 gi|88184699|gb|EAQ92167.1| hypothetical protein CHGG_00402 [Chaetomium globosum CBS 148.51]
          Length = 716

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 146/473 (30%), Gaps = 52/473 (10%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD  +   +         + S G   WLP G +  + +   IREE
Sbjct: 251 MAAHKKFL--EEAAKRDHRLIGKQ--QELFYFEESSPGSAMWLPHGMRINNAIMDYIREE 306

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P + +  LW +SG    Y ++M  L D + +     P +          
Sbjct: 307 YWKRDYDEVMTPNMFNVSLWEQSGHLAHYKEDMF-LLDVDKEQFGLKPMNCPGH------ 359

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                + LP       +  R+E      G+ R R F   DA+ F    +  K     +F 
Sbjct: 360 -----KELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-CREDQIKEEVADLFD 413

Query: 180 SYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGE------------------- 218
                +  LGL    ++  + P    G++S      A   E                   
Sbjct: 414 FMSSFYGMLGLTF-KLKLSTRPDKFMGEISTWDSAEARLKEALNEFAAANEGVTWELNAG 472

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              F         +         +     I        A +     +    +        
Sbjct: 473 DGAFYGPKVDIAVLRQWQCATIQLDFQQPINFSLEYQTAESVQKDKKDAAPAPAPAPAPV 532

Query: 279 ARGIEVGHIF--YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              +  G       G +   P+      A G    V +     G++    A++     GK
Sbjct: 533 PAPVPDGTAEEKKDGREKKKPLLVKKPLAPGCARPVMIHRAMAGSIERFTAILAEHFAGK 592

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              WP  ++P ++ +I +           +++ A L K    V  D  G  +  +     
Sbjct: 593 ---WPYWMSPRQVIVIPVGMG---FLGYAKEVAALLKKERFHVDVDSSGNTLQKKIRNGQ 646

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNN 445
           L  +    +VG   + + KV I++R     +     + LE+ I       ++ 
Sbjct: 647 LAQYNFCFVVGDDEMRNRKVNIRYRDDTSTQARDVPVDLEDAIEKLRKLKADR 699


>gi|257456072|ref|ZP_05621275.1| prolyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257446530|gb|EEV21570.1| prolyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 578

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/244 (36%), Positives = 140/244 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+RS+ F+P L+E P +A + SH+L+LR GMI +   G++++LPLG +    V  I+REE
Sbjct: 1   MKRSQTFIPTLRETPAEAVVVSHQLLLRAGMIRRLGNGLFNYLPLGLRVFRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E     +   ++W ES R+ + G  +LR+ +R  + ++  PT+EE  T + R 
Sbjct: 61  IDAIGCLECKASVVAPGEIWQESKRWYTMGDGLLRMKNRLGQDLVVSPTNEESFTALMRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++ P + Y I  K+RDE+RPR+G+MR+REF MKDAYSF    E    +Y     +
Sbjct: 121 ELGSYKDYPLSVYHINTKYRDEIRPRYGLMRAREFTMKDAYSFHTNAECLDKTYRAFGEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R GL  I +RA+SG +GG  S EF+V +  G+  +             +     
Sbjct: 181 YEKIFRRFGLSIIRVRADSGSMGGSGSEEFMVESAIGDDTLILCPQCRYSANEEKAACAP 240

Query: 241 DIIS 244
           D  +
Sbjct: 241 DPYT 244



 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 5/212 (2%)

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFG 291
           +     +  +    +  +     A   DV   K  DS P       S +G E+GHIF  G
Sbjct: 362 AVTGALEKDMHYIHVEPKRDFTPAMVYDVRVVKAGDSCPLCGTPFYSKKGNELGHIFKLG 421

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           TKY+  M+ T+    G+  Y  MG YGIG  R +A++IE  HD  GIIWP SVAP+ + +
Sbjct: 422 TKYTKSMNMTYLDESGQQQYPLMGCYGIGIDRALASIIEEHHDSNGIIWPMSVAPYHVGI 481

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I  ++   + A ++++  L+  G +V  DD  E+ G +F   DL+G P+++++  K +
Sbjct: 482 VPI-QYEGTMKAAADRLHDELTMRGIEVLLDDRVERPGVKFKDMDLIGLPIRIVISDKKL 540

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +  VE K R      +M L+ V +Y   R  
Sbjct: 541 PN--VEFKFRSDTDPVNMPLDGVADYVVQRVQ 570


>gi|27262218|gb|AAN87390.1| Threonyl-tRNA synthetase [Heliobacillus mobilis]
          Length = 311

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 111/340 (32%), Gaps = 38/340 (11%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      ++++ I SYR+LP    ++ L  R E+     G+MR R F   DA+ F L P
Sbjct: 1   MNCPGSMLVYKNSIHSYRDLPLRMAELGLVHRHEISGALHGLMRVRCFTQDDAHIFML-P 59

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              K     +     R +   G     +   + P     S E   LA +       SK  
Sbjct: 60  SQIKEEIMGVIDLVDRFYKTFGFDY-HIELSTKPEKAMGSDEIWELATSSLEDALKSKGM 118

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                P +   +   I                               K    R  + G I
Sbjct: 119 DYKINPGDGAFYGPKIDF---------------------------HLKDCLGRTWQCGTI 151

Query: 288 FYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                +       T+ G DG+ H  V +     G++     ++     G    W   +AP
Sbjct: 152 -QLDFQMPERFDLTYVGEDGQKHRPVMIHRVVFGSIERFIGILTEHFAGAFPAW---LAP 207

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ ++ I           +K+ A L++ G     DD  E+IG +     +   P  ++V
Sbjct: 208 VQVRVLPIT---DRHHAYAQKVLAHLAERGIRAEVDDRNEKIGYKIREGQVKKIPYLLVV 264

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G K   +  V ++    G +    L+E            +
Sbjct: 265 GDKEAENGAVAVRKYGEGDKGACGLDEFTKMLIEEIGTKK 304


>gi|257076511|ref|ZP_05570872.1| threonyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 668

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 156/455 (34%), Gaps = 26/455 (5%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           + L   +   RD      ++ L T   ++ + G+  + P G    + +   ++E   ++G
Sbjct: 221 FLLRREEAIKRDHRKIGQEMDLFT-FDNERAPGMPFYAPNGAIIRNELINYMKELNEKSG 279

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+         +W +SG Y  Y  +M      N       P +      IF+  + SY
Sbjct: 280 WEEVWTAHAFKDIIWKQSGHYYKYKDDMFLFTLPNGDNYGLKPMNCPGHIAIFQRSVYSY 339

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R++P  + +    +R E      G+ R R F + D + F +  +        +      I
Sbjct: 340 RDMPVKYSEAGTVYRYEKSGEMGGLTRPRGFTIDDGHGF-VREDQIFDETISLLKIIPSI 398

Query: 185 FHR-LGLKSIPMRAESG----PIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTD 238
           F   LG + I           P    +S+E    +  GE   +  +      P       
Sbjct: 399 FKTILGTEEITYDLSVMDKQHPENYLMSYE---CSSCGEKFMLRAASQEYKCPACGSENL 455

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGT---KY 294
             D    ++  E            + E   + +    K        +G ++   T    +
Sbjct: 456 NSDFSMWDNATENLRRALEELKLKYTEYPGEAAFYGPKIDVHIKDALGRLWQLSTIQIDF 515

Query: 295 SLP--MSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +P      +    D K   V +     G+     A++    +GK  +W   + P +  +
Sbjct: 516 FMPANFDLYYIDKNDTKVRPVIIHRAIYGSYERFIAILLEHFNGKLPLW---LTPLQAYI 572

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +    +   +   +I  +L + G     D     I  +  +   +     ++VG K +
Sbjct: 573 IPV---SEAYNEYATEINKKLREKGIRSKVDISDGTISKKIKLIRTMRPSYILVVGEKEL 629

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +++ V +++R    RE   ++E +   +      +
Sbjct: 630 ANNSVSVRNRKDKTRE-YGMDEFMGIMAEEIREKK 663


>gi|182414299|ref|YP_001819365.1| threonyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|177841513|gb|ACB75765.1| threonyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 637

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 83/502 (16%), Positives = 142/502 (28%), Gaps = 98/502 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
            ++Y     Q   RD         L+   I +   +G+  W P G      +   I EE 
Sbjct: 167 LAQYLERQEQAKARDHRKLGK--DLKLFHIDEDVGQGLVLWTPNGAVIRQELQNFISEEL 224

Query: 62  NRTGAIEMSV------------------------PTLQSADLWVESG----------RYD 87
            + G  ++                          P  ++  L    G          R +
Sbjct: 225 RKQGYQQVFTPHIGKLELYKTSGHFPYYKDSQFSPIFETDSLAKAIGENCSCAEAFARLE 284

Query: 88  SYGKEM-----------------LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +    +                 +R  D+     +  P +      IF S   SYR+LP 
Sbjct: 285 AVSANLAAQINARTGKESIAPDRVRPDDQLLSGFMLKPMNCPHHIKIFASQPHSYRDLPV 344

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F  T E               I   LG
Sbjct: 345 RLAEFGTVYRWEQSGELNGMTRVRGFTQDDAHLF-CTEEQVAAEVLGCLSLVKIILSTLG 403

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +    +R        +         D  E                               
Sbjct: 404 MADYRVRVGLRDPDSNKYTGDAANWDKAENA----------------------------- 434

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATFKG 304
               A          E    +    K        +G  +  GT    Y+LP     ++ G
Sbjct: 435 -CREAAKTLGVPFTEEPGEAAFYGPKIDFVIKDVIGREWQLGTVQVDYNLPVRFDLSYIG 493

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           AD + H  V +     G+M     V+     G    W   +AP ++ L+ I        D
Sbjct: 494 ADNQPHRPVMIHRAPFGSMERFCGVLIEHFAGDFPAW---LAPEQVRLVPI---SDKVAD 547

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  RL         D+  +++G++   A++   P  +++G K    + V ++ R  
Sbjct: 548 YARALLGRLKAENFRATLDEHSDKLGAKIRRAEIDKVPYTLVIGQKEAEANSVSVRSRAR 607

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+ +  I       +  
Sbjct: 608 GDEGVMTADAYIAKLKTEIATR 629


>gi|29840011|ref|NP_829117.1| prolyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|81838013|sp|Q824A9|SYP_CHLCV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29834358|gb|AAP04995.1| prolyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 577

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 90/270 (33%), Positives = 143/270 (52%), Gaps = 2/270 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  I+REE
Sbjct: 1   MKTSQLFYKTSKNANKEAAVLSYELLEKAGYIFKTAKGIYTYTPLFWRVALKMMDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E  +  L DR DK +   PTHEEV++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTLTDREDKELCLAPTHEEVVSMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR+REFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAREFLMEDSYTFSDSPEQMNEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y  IF RL +K + + A+ G IG   S EF VL   GE  +  S  +      + +  
Sbjct: 181 QAYQNIFDRLEIKYVIVEADGGKIGKGKSEEFHVLCSLGEDTICVSGAYGANIEAAVSQP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                    +  +  A     +  H +  F
Sbjct: 241 PQYTYDKEHLPIEEVATPDVRTMEHLQDFF 270



 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 2/220 (0%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            M   I + NT      ++N   +     Y          L  +          G+EV H
Sbjct: 354 CMTNFICAGNTKDKHYKNVNWDRDIPRPEYGDFLLAEAGDLCPANGNAPYEVFEGVEVAH 413

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           IF  GT+Y+      F+    +     MG+YGIG  R +AA IE   D +GI+WP ++AP
Sbjct: 414 IFNLGTRYTECFEVGFQNEQEEQQTCWMGTYGIGIGRTLAACIEQLADDRGIVWPKAIAP 473

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           F I+++     D   ++A EKIY  L   G     DD  E++G +   +DL+G P ++I+
Sbjct: 474 FDIAIL-YNGGDAASQEAAEKIYKDLQNYGYAPLLDDRNERLGFKLKDSDLIGIPYKLIL 532

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G  F +   +EI+ R +  +  +  ++  N+  + F   R
Sbjct: 533 GKTFQNSGVLEIESR-SREKFFVEPKDFFNWCKNYFPKPR 571


>gi|323692292|ref|ZP_08106531.1| threonyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323503617|gb|EGB19440.1| threonyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 653

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 41/453 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L    E+  D +   H  + R   +        +G+   +P G K +  +   + 
Sbjct: 222 ASKEELNAYLEHLEDIKKRDHNKLGREMRLFTTVDVIGQGLPLLMPNGVKIVQRLQRWVE 281

Query: 59  E-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMT 115
           + E N  G I    P +  +DL+  SG +D Y   M  L D   + +     P       
Sbjct: 282 DLEDNEWGYIRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEETDKEVFALRPMTCPFQY 341

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            ++++   SYR LP  + +    FR+E      G+ R R+F + + +   + P+  +   
Sbjct: 342 YVYKNDQHSYRELPLRYSETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-IRPDQVEEEL 400

Query: 175 NKMFVSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                  +     LGL   +  R                  D    + +   +       
Sbjct: 401 AGCLDLAVHCLTTLGLQDDVTYRLSK--------------WDPDNREKYLGDEEYWEKTQ 446

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +  D   ++  N    +     A      + +  +   +   +    ++          
Sbjct: 447 GKIRDL--LVEKNVPFTEADGEAAFYGPKIDIQAKNVYGKEDTMITIQLDCA-------- 496

Query: 294 YSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            +      F   +G K     +    +G      A +   + GK   W   + P ++ ++
Sbjct: 497 IAENFDMYFIDQNGDKVRPYVIHRTSMGCYERTLAWLIEKYAGKFPTW---LCPEQVRVL 553

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +       ++   L K G     D+  E+IG +     L   P  ++VG +  +
Sbjct: 554 PISDKYES---YAGEVAKELKKNGVFCSVDNRSEKIGYKIRETRLDKIPYMLVVGQQEEA 610

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           D  V ++ R  G      L E I          
Sbjct: 611 DKAVSVRSRFAGDEGVKPLGEFIEQICREIRTK 643


>gi|294055076|ref|YP_003548734.1| threonyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293614409|gb|ADE54564.1| threonyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 612

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 76/472 (16%), Positives = 138/472 (29%), Gaps = 70/472 (14%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + Q   RD      +L L   +      G+  W P G      +   I +E  ++G
Sbjct: 171 YLDKLEQAKARDHRKLGKELKLFH-IDDSVGSGLVLWSPNGAVVRTELQNFIADELQKSG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------------------------ND 101
             ++  P +    L+  SG +  Y +                                  
Sbjct: 230 YDQVFTPHIGKLGLYRTSGHFPYYKESQFPPIVEPGTVEELAHEGCSCADLSNKLDSGEI 289

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
              +  P +  +   IF S   SYR+LP    +    +R E      G+ R R F   DA
Sbjct: 290 DGYLLKPMNCPMHIKIFDSQPHSYRDLPVRLAEFGTVYRWEQSGELNGMTRVRGFTQDDA 349

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           + F  T +               +F+ LG+    +R                  D  E  
Sbjct: 350 HLF-CTEDQIAEEIAGCLDLVKLVFNTLGMTEYRVRIGLRDPDASKYVGDPAKWDAAEDA 408

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +  +                                    D   E    +    K     
Sbjct: 409 LRSAAQ------------------------------TLGVDYTEEPGEAAFYGPKIDFVV 438

Query: 281 GIEVGHIFYFGT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHD 334
              +G  +  GT    Y+LP      + GAD + H  V +     G+M     V+     
Sbjct: 439 KDVIGREWQLGTVQVDYNLPERFDLNYIGADNEKHRPVMLHRAPFGSMERFCGVLIEHFA 498

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G    W   +AP ++ ++ +            +I          V  D + +++G++   
Sbjct: 499 GNFPTW---LAPEQVRILPMNDD---LVPQAREIEKLFKAAKIRVTVDAIADKLGAKIRK 552

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL-EEVINYASHRFSNN 445
             +   P  +++G K   D  +++  R     E +    E ++      +N 
Sbjct: 553 CHVDKVPHFLVLGRKEAEDGLIKVNSRANKALEGLKTPSEFLSELLENIANK 604


>gi|323487567|ref|ZP_08092859.1| hypothetical protein HMPREF9474_04610 [Clostridium symbiosum
           WAL-14163]
 gi|323399124|gb|EGA91530.1| hypothetical protein HMPREF9474_04610 [Clostridium symbiosum
           WAL-14163]
          Length = 653

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 41/453 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIR 58
            SK  L    E+  D +   H  + R   +        +G+   +P G K +  +   + 
Sbjct: 222 ASKEELNAYLEHLEDIKKRDHNKLGREMRLFTTVDVIGQGLPLLMPNGVKIVQRLQRWVE 281

Query: 59  E-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMT 115
           + E N  G I    P +  +DL+  SG +D Y   M  L D   + +     P       
Sbjct: 282 DLEDNEWGYIRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEETDKEVFALRPMTCPFQY 341

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            ++++   SYR LP  + +    FR+E      G+ R R+F + + +   + P+  +   
Sbjct: 342 YVYKNDQHSYRELPLRYSETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-IRPDQVEEEL 400

Query: 175 NKMFVSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                  +     LGL   +  R                  D    + +   +       
Sbjct: 401 AGCLDLAVHCLTTLGLQDDVTYRLSK--------------WDPDNREKYLGDEEYWEKTQ 446

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +  D   ++  N    +     A      + +  +   +   +    ++          
Sbjct: 447 GKIRDL--LVEKNVPFTEADGEAAFYGPKIDIQAKNVYGKEDTMITIQLDCA-------- 496

Query: 294 YSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            +      F   +G K     +    +G      A +   + GK   W   + P ++ ++
Sbjct: 497 IAENFDMYFIDQNGDKVRPYVIHRTSMGCYERTLAWLIEKYAGKFPTW---LCPEQVRVL 553

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I    +       ++   L K G     D+  E+IG +     L   P  ++VG +  +
Sbjct: 554 PISDKYES---YAGEVAKELKKNGVFCSVDNRSEKIGYKIRETRLDKIPYMLVVGQQEEA 610

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           D  V ++ R  G      L E I          
Sbjct: 611 DKAVSVRSRFAGDEGVKPLGEFIEQICREIRTK 643


>gi|149198845|ref|ZP_01875887.1| prolyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149138043|gb|EDM26454.1| prolyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 577

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/230 (43%), Positives = 141/230 (61%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK     ++E P+DA+ ASH  ++R G I   S GIY+ LPL ++    +  IIREE
Sbjct: 1   MRLSKLVGKRVKEAPKDAQSASHIFLMRGGYIRPVSTGIYTLLPLAKRMTTKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+ +P +  A++W ESGRYDS  + +LR  DRN K M+   THEE +  + R+
Sbjct: 61  MEAVDCQEIMMPVVNPAEIWQESGRYDSVDQSLLRFKDRNQKDMVLAMTHEEAVCHMART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE R R G++R REF MKDAYSF  + +     Y+++  +
Sbjct: 121 EITSYKQLPASVYQIQTKYRDEARARAGLIRVREFTMKDAYSFHDSEKCLSDYYDRVHQA 180

Query: 181 YLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y RIF R+GL   + + +++G IGG LSHEF+ ++D GE  +F S D   
Sbjct: 181 YERIFERVGLSDCVSIESDAGMIGGSLSHEFMAISDIGEDTLFLSPDRQY 230



 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 2/204 (0%)

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMS 299
               N   E+     A   DV   +  D  P         +GIEVG+IF  GTKYS  M 
Sbjct: 367 YHYKNFNWERDFDGEADIIDVATVREGDPCPVTGEPLEMLKGIEVGNIFQLGTKYSDSMG 426

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             +   +GK     MG YGIG  R +A+V E  +D  G +WP S+AP+++ +I +     
Sbjct: 427 VRYLDKNGKAQIPTMGCYGIGVGRALASVCEQRNDKWGPVWPISIAPYQVHVIALTGGQP 486

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++  E++Y  L K G +V +DD   + G  F  ADL+G PL++I+  K ++    E K
Sbjct: 487 EIKEEAEELYKNLQKEGIEVIFDDRDPKPGFAFNDADLIGVPLRLIISKKSMAQDSYEFK 546

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R    +E +   E   +  +R  
Sbjct: 547 TRDGSEKELIPKAEAFEFIVNRVK 570


>gi|160915433|ref|ZP_02077644.1| hypothetical protein EUBDOL_01441 [Eubacterium dolichum DSM 3991]
 gi|158432553|gb|EDP10842.1| hypothetical protein EUBDOL_01441 [Eubacterium dolichum DSM 3991]
          Length = 553

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 93/217 (42%), Positives = 135/217 (62%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE +  GA E+ 
Sbjct: 1   MRENAKDEDSVSGNLLVRAGMIKKSSAGIYMIMPMGKRVLKKIEDIVREEMDAAGAQELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P L   +++  SGR D++G  M  L DR  K  + GPTHEE+ T       +SY++ P+
Sbjct: 61  MPALIPEEVYEISGRRDAFGSNMFALKDRYQKNYVLGPTHEELFTLAAMMKGRSYKDFPY 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQIQ KFRDE RPR+G++R+REF+MKDAYSFD+  E    SY KMF +Y +IF R  L
Sbjct: 121 NLYQIQTKFRDETRPRYGLIRTREFIMKDAYSFDIDNEHLHESYMKMFDAYKKIFDRCDL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
               ++A++G +GG LS EF  + D GE  V   +  
Sbjct: 181 NYKIVKADTGAMGGSLSEEFQAICDVGEDVVVTCEHC 217



 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+      D  P         +GIEVG+ F  G KY+  +   +  A+   H V+MG
Sbjct: 367 MCADIAQVHEGDVCPVCGAPLSFCKGIEVGNTFKLGNKYAKALGLEYLDANNTLHPVEMG 426

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +A+++E  HD  GIIWP SVAP++++++ +   D+       ++Y  L   
Sbjct: 427 CYGLGLERTLASIVEQHHDDDGIIWPLSVAPYQVAIVIVSMKDEEQVRIANELYETLKAE 486

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +F   +L+G P ++ VG + ++   VE++ R     E++++E V+
Sbjct: 487 GYDVLLDDRKERPGVKFKDMELIGIPYRITVG-RGIAQGNVELRARGAHENEEVAIENVV 545

Query: 436 NYASHRFS 443
            Y  ++  
Sbjct: 546 TYLQNKLQ 553


>gi|218513336|ref|ZP_03510176.1| prolyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 215

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 158/210 (75%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           DF IP E+TDFD +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIE GHIF
Sbjct: 4   DFDIPGESTDFDSVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEAGHIF 63

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           YFGTKYS PM A  +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF 
Sbjct: 64  YFGTKYSEPMGAKVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFD 123

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +IN+KA DQ C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G 
Sbjct: 124 VVVINMKAGDQACDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGP 183

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + V++ +VE+K R TG RE M++E  IN  
Sbjct: 184 RAVANGEVEVKDRKTGARETMTIEAAINRF 213


>gi|294954482|ref|XP_002788190.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|294954484|ref|XP_002788191.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239903405|gb|EER19986.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239903406|gb|EER19987.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 720

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 143/443 (32%), Gaps = 83/443 (18%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ R G I  H   G Y   P      + +      E  + G      P   S   L  
Sbjct: 225 QVITRGGFIRYHDISGCYILRPPVMFIWEQIQQAFDTEIKKLGVRPCCFPMFVSKSALER 284

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D    + +   PT E +M   +   I+SYR+LP    Q   
Sbjct: 285 EKEHVEGFSPEVAWVTKAGDSELPEPIAIRPTSETIMYPSYADWIRSYRDLPLKLNQWTN 344

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ +    T   +K        +   ++  L L       
Sbjct: 345 VVRWEFKQPTPFIRTREFLWQEGH----TAHATKEE------AVGLVYSILDL------- 387

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                 ++   +      +    ++ +      +          
Sbjct: 388 ---------------------YKMLYEQLLAVPVVQGVKSEMEKFAGGEATTTCEAFVAC 426

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                 R ++     + GT ++      F+  DG+  + +  S+
Sbjct: 427 NG--------------------RAVQGATSHFLGTHFAKMFGIEFEDRDGEKKFAEQTSW 466

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-----------DQVCRDACE 366
           G    R +  +I    D KG++ P  VA  ++ ++ I               ++  + C+
Sbjct: 467 GFT-TRSIGVMIMEHGDDKGLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKEMIGEKCK 525

Query: 367 KIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            IY  L   G  V  DD   +  G +F   +L G PL++ VG+K +    V    R +G 
Sbjct: 526 SIYEDLKANGVRVVLDDREDKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNSGR 585

Query: 426 RE------DMSLEEVINYASHRF 442
           +        + ++  +       
Sbjct: 586 KSQEAKHASVEVKAALESIQSEL 608


>gi|225026720|ref|ZP_03715912.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
 gi|224955955|gb|EEG37164.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
          Length = 650

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 150/448 (33%), Gaps = 44/448 (9%)

Query: 11  LQENPR---DAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIRE-EQN 62
           L+E  +   + ++  H  + R   +        +G+   LP G K +  +   I + E N
Sbjct: 226 LEERLKYLEEIKLRDHNRLGREMELFTTVDVIGQGLPLLLPKGAKIIQTLQRWIEDLEDN 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRS 120
             G +    P +  +DL+  SG +D Y + M  L D   + + +   P         +++
Sbjct: 286 EWGYVRTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEENDKEVLALRPMTCPFQYYCYKN 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             KSYR+LP+   +    FR+E      G+ R R+F + + +   + P+ +         
Sbjct: 346 TQKSYRDLPYRMSETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-IRPDQTNDELKGCLH 404

Query: 180 SYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                   LG+   +  R                  D    + +   D           +
Sbjct: 405 LAQYCLGVLGVQDDVTYRLSK--------------WDPNNKEKYLGDDEYWETTQDAIRN 450

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                 +  +        A      + +  +   +   +    ++           +   
Sbjct: 451 ILVDQGVPFVEA--EGEAAFYGPKIDIQAKNVYGKEDTMITIQLDCA--------IAENF 500

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +G K     +    +G      A +   + GK   W   + P ++ ++ I   
Sbjct: 501 DMYYIDQNGDKQRPYVIHRTSMGCYERTLAWLIEKYAGKFPTW---LCPEQVRVLPI--- 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  E++   L + G     D+  E+IG +   A L   P  ++VG++     KV 
Sbjct: 555 SEKFADYAEEVNKELKRNGILSTVDNRSEKIGYKIREARLQKLPYMLVVGAQEQETGKVS 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G      L++ I+         
Sbjct: 615 VRSRFAGDEGQKDLKDFISAICEEIRTK 642


>gi|111658322|ref|ZP_01409011.1| hypothetical protein SpneT_02000512 [Streptococcus pneumoniae
           TIGR4]
          Length = 612

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 133/206 (64%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E  + GA+
Sbjct: 3   IPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQEFEKIGAV 62

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R  +KSY+ 
Sbjct: 63  EMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRDSVKSYKQ 122

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +Y RIF R
Sbjct: 123 LPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAAYERIFTR 182

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVL 213
            GL    +  + G +GG  S EF+ +
Sbjct: 183 SGLDFKAIIGDGGAMGGKDSQEFMAI 208



 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 14/233 (6%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           ++   +   D        + DD         +             E       +     A
Sbjct: 376 KIIADRKVQDVRNAVVGANEDDYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLNFA 435

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------ 333
           RGIE+GHIF  GT+YS  M A     +G+   + MG YGIG  R+++AV+E         
Sbjct: 436 RGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNK 495

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                     GI +P  +APF + LI +   D+  +   EK+ A L   G +V  DD  E
Sbjct: 496 TPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNE 555

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G +F+ +DL+G P+++ VG K  +D  VE+K + TG   ++  + V+    
Sbjct: 556 RVGVKFSDSDLIGLPIRITVGKK-AADGIVEVKIKATGDTIEVHADNVLETLE 607


>gi|218260218|ref|ZP_03475604.1| hypothetical protein PRABACTJOHN_01265 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224670|gb|EEC97320.1| hypothetical protein PRABACTJOHN_01265 [Parabacteroides johnsonii
           DSM 18315]
          Length = 526

 Score =  242 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 165/448 (36%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
             L+++  +    + +G     P G    + +  I+ +    TG +    P L       
Sbjct: 53  QDLVIKADLAENSAVRGCMVIKPYGYAIWEKMQRILDDMFKETGHVNAYFPLLIPKSFLS 112

Query: 81  VESGRYDSYGKEM-----LRLADRND-------------KAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE       RL   +D             + +I  PT E ++ + +R+ I
Sbjct: 113 KEAEHVEGFAKECAVVTHYRLKTNHDGTGVVVDPAAKLEEELIIRPTSETIIWNTYRNWI 172

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E       MR+R FL    + +                   
Sbjct: 173 QSYRDLPILCNQWANVMRWE-------MRTRLFLRTAEFLWQ------------------ 207

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                    H      +  E +           +     DF + 
Sbjct: 208 -----------------------EGHTAHATREEAEIEA--------KKMQGVYADFAEN 236

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +V+   +     +   +    +++ ++     + ++ G   + G  +      TF
Sbjct: 237 YMAMPVVKGVKSASERFAGALDTYTIEAMMQDG----KALQAGTSHFLGQNFGKAFDVTF 292

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK+ Y    S+G+ + R++ A+I S  D  G++ P  +AP ++ +I I    +   
Sbjct: 293 IDKNGKNEYAWATSWGV-STRLIGALIMSHSDDNGLVLPPHLAPIQVVIIPIYRSAEQLA 351

Query: 363 DACEK---IYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              EK   I A+L  +G  V +DD   ++ G +FA  +L G P+++ +G + + ++ +E+
Sbjct: 352 QISEKVNGIVAKLKALGISVKFDDADNKKPGWKFAEYELKGVPVRLAMGGRDLENNTIEV 411

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E ++ + +  Y  +     +
Sbjct: 412 MRRDTLEKETVTCDNIETYVQNLLEEIQ 439


>gi|15836031|ref|NP_300555.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|8978870|dbj|BAA98706.1| prolyl tRNA synthetase [Chlamydophila pneumoniae J138]
          Length = 568

 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E  +  L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            +Y +IF RLGL  + + A+ G IG   S EF VL   GE  +
Sbjct: 181 SAYSKIFDRLGLAYVIVTADGGKIGKGKSEEFQVLCSLGEDTI 223



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 2/191 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              Y               P +     +GIEV HIF  GT+Y+      F    G+    
Sbjct: 380 PPQYGDFLLAEEGDTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFLDEHGQTQQC 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG+YGIG  R +AA +E   D +GI+WP ++APF I++      D V ++  E IY  L
Sbjct: 440 WMGTYGIGVGRTLAACVEQLPDDRGIVWPKALAPFSITI-AFNGGDTVSQELAETIYHEL 498

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +   DD  E++G +   +DL+G P ++I+G  + S    EI+ R +G +  +S E
Sbjct: 499 QSQGYEPLLDDRDERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR-SGEKYTVSPE 557

Query: 433 EVINYASHRFS 443
               +  +  +
Sbjct: 558 AFPTWCQNHLA 568


>gi|15618411|ref|NP_224696.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|16752543|ref|NP_444805.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33241851|ref|NP_876792.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|13633970|sp|Q9Z851|SYP_CHLPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4376787|gb|AAD18640.1| Prolyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189180|gb|AAF38117.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33236360|gb|AAP98449.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 568

 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E  +  L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            +Y +IF RLGL  + + A+ G IG   S EF VL   GE  +
Sbjct: 181 SAYSKIFDRLGLAYVIVTADGGKIGKGKSEEFQVLCSLGEDTI 223



 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 2/191 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              Y               P +     +GIEV HIF  GT+Y+      F+   G+    
Sbjct: 380 PPQYGDFLLAEEGDTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFQDEHGQTQQC 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG+YGIG  R +AA +E   D +GI+WP ++APF I++      D V ++  E IY  L
Sbjct: 440 WMGTYGIGVGRTLAACVEQLADDRGIVWPKALAPFSITI-AFNGGDTVSQELAETIYHEL 498

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +   DD  E++G +   +DL+G P ++I+G  + S    EI+ R +G +  +S E
Sbjct: 499 QSQGYEPLLDDRDERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR-SGEKYTVSPE 557

Query: 433 EVINYASHRFS 443
               +  +  +
Sbjct: 558 AFPTWCQNHLA 568


>gi|325287208|ref|YP_004262998.1| Prolyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324322662|gb|ADY30127.1| Prolyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 492

 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 77/465 (16%), Positives = 163/465 (35%), Gaps = 89/465 (19%)

Query: 10  ILQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           + ++  + AE  S    +L+++  +    + +G     P G    + + A +      TG
Sbjct: 1   MSKKLTKRAEDYSKWYNELVVKADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETG 60

Query: 66  AIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLAD-------------------RNDKAMI 105
                 P      L+  E    + + KE   +                     + ++ ++
Sbjct: 61  HENAYFPLFVPKSLFEAEEKNAEGFAKECAVVTHYRLQNDPDKPGKLRVDPNAKLEEELV 120

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             PT E ++ + ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   
Sbjct: 121 VRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHT--- 176

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                                                           A   E +     
Sbjct: 177 ------------------------------------------------AHATENEAIAEA 188

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           + M         DF  +  +  +         A      E L            + ++ G
Sbjct: 189 EQMMDVYADFAEDFMAVPVVKGLKTPSERFAGAVETYCIEAL--------MQDGKALQAG 240

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D  G++ P  +A
Sbjct: 241 TSHFLGQNFAKAFDVKFASKEGKQEHVWATSWGV-STRLMGALIMTHSDDNGLVLPPKLA 299

Query: 346 PFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFP 401
           P ++ ++ I   D+      EK   +   L   G  V +D+    + G +F   +L G P
Sbjct: 300 PIQVVIVPIYKGDEQLDAISEKVNPLVKELRAKGISVKFDNRDTHKPGFKFNEYELKGVP 359

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +++ +G + + +   E+  R T  +E ++ ++VI        + +
Sbjct: 360 VRIAIGKRDLENGTYEVARRDTLEKEIVNADDVIGKIEFLLDDIQ 404


>gi|62184882|ref|YP_219667.1| prolyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81312944|sp|Q5L6M5|SYP_CHLAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|62147949|emb|CAH63696.1| prolyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 577

 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 144/280 (51%), Gaps = 2/280 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKEASVLSYELLEKAGYIFKTAKGIYTYTPLFWRVALKMMDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E  +  + DR DK     PTHEE+++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTVKDREDKEFCLAPTHEEIVSMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMNEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y  IF RL ++ + + A+ G IG   S EF VL+  GE  +  S  +      +    
Sbjct: 181 QAYQNIFDRLEIQYVIVEADGGKIGKGKSEEFHVLSSLGEDTLCVSGHYGANIEAAVAQP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                  + +  +        +  + +  F   P     +
Sbjct: 241 PQYTYDKDYLPIEEVDTPDVRTIENLQDFFSVPPYRIMKT 280



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 5/236 (2%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               D    +              ++  + ++     I       YA         L  +
Sbjct: 341 NCPIDFYADETTQCMTNFICAGNVKDKHYKNVNWDRDIP---RPEYADFLLAEAGDLCPT 397

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                     G+EV HIF  GT+Y+      F+   GK     MG+YGIG  R +AA IE
Sbjct: 398 NNHAPYEIFEGVEVAHIFNLGTRYTEGFDVVFQDEQGKPQSCWMGTYGIGIGRTLAACIE 457

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D +GI+WP ++APF IS++     D  C +A EKIY  L   G     DD  E++G 
Sbjct: 458 QLADDRGIVWPKAIAPFDISIL-YNGGDTACEEAAEKIYKELQGYGYAPLLDDRNERLGF 516

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   +DL+G P ++I+G  F++   +EI+ R    +  +  ++ +++      + R
Sbjct: 517 KLKDSDLIGIPYKLILGKTFLNSGMLEIESRSI-EKFSVEPKDFVHWCKRHLPSPR 571


>gi|68491354|ref|XP_710514.1| hypothetical protein CaO19.5685 [Candida albicans SC5314]
 gi|46431727|gb|EAK91259.1| hypothetical protein CaO19.5685 [Candida albicans SC5314]
          Length = 706

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 149/440 (33%), Gaps = 43/440 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A    H+ + R     + ++ S G   WLP G +  + +   +R E  + G  E+  P
Sbjct: 295 AEAAERDHRKIGREQELFIFNEMSPGSAMWLPHGARIYNTLVDTLRTEYRKRGYEEVITP 354

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + S  LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 355 NMYSTKLWETSGHWQNYKENMFSFEVEK-ETFGLKPMNCPGHCILFKSRERSYRELPWRV 413

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +        +F    +++   G +
Sbjct: 414 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTT-DQIGTEIAGVFDFLKKMYGIFGFE 472

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       +    A+    Q                             E 
Sbjct: 473 F-KMELSTRPEKYVGDLDTWNSAEKKLEQALND------------------FLGEGKWEL 513

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L               
Sbjct: 514 NPGDGAFYGPKIDIMISDALKRWFQCATIQLD----FQLPQRFELEYK---SDKGPNTRP 566

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++   + GK   WP  ++P +I ++ +        D  +K+  +
Sbjct: 567 VMIHRAILGSVERMTAILTEHYKGK---WPFWLSPRQILIVPVGPK---YYDYAQKLQKK 620

Query: 372 LS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIR 426
           L+         D  G  +  +     +  +    IVG +  +   V +++R      G  
Sbjct: 621 LNDDYFFYCDVDVSGNTLPKKIRTGQMYKYNFIFIVGEEEENSESVNVRNRDIPEEQGKN 680

Query: 427 EDMSLEEVINYASHRFSNNR 446
             +  ++V+        + R
Sbjct: 681 AMVGFDDVVKQLVALRESKR 700


>gi|15835287|ref|NP_297046.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270285461|ref|ZP_06194855.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270289472|ref|ZP_06195774.1| prolyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|301336858|ref|ZP_07225060.1| prolyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
 gi|13633968|sp|Q9PK01|SYP_CHLMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7190706|gb|AAF39493.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 579

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 139/223 (62%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MKTSLLFYRTSKNANKEASVLSYELLEKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQSA+LW ++GR++++  E  +  L DR +K M   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQSAELWQKTGRWEAFLSEKLLYVLKDRENKEMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 SQWLTGRKQLPVHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVTADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 7/225 (3%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           ET    +           +  + +      +        A + D+  +            
Sbjct: 350 ETTRPMTNFICANNQKDIHCRYVNWERDIPLPIFGDFLLAESGDLCPQNNEAPY-----E 404

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +G+EV HIF  GT+Y+   S  F+  +G+     MG+YGIG  R +AA IE   D KG
Sbjct: 405 IFQGVEVAHIFNLGTRYTECFSVGFQDENGEKQLCWMGTYGIGVGRTLAACIEQLADSKG 464

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP +VAPF I+++     D        + Y  L+  G +   DD  E++G +   +DL
Sbjct: 465 IVWPLAVAPFSITIL-YNGGDTEGEAVASQFYQSLNTAGFEPLLDDRNERLGFKLKDSDL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           LG P ++I+G  F     +EI+ R +G + ++S E ++++ S   
Sbjct: 524 LGIPYKLIIGKSFQKTGMLEIESR-SGEKYNISPENLLDWCSKNL 567


>gi|238882425|gb|EEQ46063.1| threonyl-tRNA synthetase [Candida albicans WO-1]
          Length = 706

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 149/440 (33%), Gaps = 43/440 (9%)

Query: 16  RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +A    H+ + R     + ++ S G   WLP G +  + +   +R E  + G  E+  P
Sbjct: 295 AEAAERDHRKIGREQELFIFNEMSPGSAMWLPHGARIYNTLVDTLRTEYRKRGYEEVITP 354

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + S  LW  SG + +Y + M        +     P +      +F+S  +SYR LP+  
Sbjct: 355 NMYSTKLWETSGHWQNYKENMFSFEVEK-ETFGLKPMNCPGHCILFKSRERSYRELPWRV 413

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R+E      G+ R R F   DA+ F  T +        +F    +++   G +
Sbjct: 414 ADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTT-DQIGTEIAGVFDFLKKMYGIFGFE 472

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              M   + P       +    A+    Q                             E 
Sbjct: 473 F-KMELSTRPEKYVGDLDTWNSAEKKLEQALND------------------FLGEGKWEL 513

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      +  + D+L    + +   ++    F    ++ L               
Sbjct: 514 NPGDGAFYGPKIDIMISDALKRWFQCATIQLD----FQLPQRFELEYK---SDKGPNTRP 566

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++  + A++   + GK   WP  ++P +I ++ +        D  +K+  +
Sbjct: 567 VMIHRAILGSVERMTAILTEHYKGK---WPFWLSPRQILIVPVGPK---YYDYAQKLQKK 620

Query: 372 LS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIR 426
           L+         D  G  +  +     +  +    IVG +  +   V +++R      G  
Sbjct: 621 LNDDYFFYCDVDVSGNTLPKKIRTGQMYKYNFIFIVGEEEENSESVNVRNRDIPEEQGKN 680

Query: 427 EDMSLEEVINYASHRFSNNR 446
             +  ++V+        + R
Sbjct: 681 AMVGFDDVVKQLVALRESKR 700


>gi|312277616|gb|ADQ62273.1| Prolyl-tRNA synthetase [Streptococcus thermophilus ND03]
          Length = 615

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 145/239 (60%), Gaps = 2/239 (0%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE  + G
Sbjct: 1   MLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREEFEKIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R  +KSY
Sbjct: 61  AVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRDAVKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +Y  IF
Sbjct: 121 KQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +D++ 
Sbjct: 181 TRAGLEFKAIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDDIPEDVME 237



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 389 AVVGANEDGYHLTGVNPERDFKAEYVDIRKVKEGEISPDGQGV--LQFARGIEIGHIFKL 446

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 447 GTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWG 506

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +AP+ + LI +   D+      +++ A L+  G DV  DD  E++GS+F+ +DL
Sbjct: 507 INFPKELAPYDVHLITVNTKDEEANALTDRLEAALAAEGYDVLIDDRNERVGSKFSDSDL 566

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + TG   +++ + +I   +
Sbjct: 567 IGLPIRVTVGKK-ASEGVVEVKIKATGDTIEVNADNLIETLA 607


>gi|326499774|dbj|BAJ86198.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 541

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/462 (16%), Positives = 159/462 (34%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  F     +    AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 67  RSTDFNAWYTDVIAAAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 116

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 117 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELAVVTIGGGKELEEKLVVRPTSETIVNHM 176

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+SYR+LP    Q     R E+R     +R+ EFL ++ ++   T E ++    +M
Sbjct: 177 FTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATLEEAEKEAMQM 235

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++ +                   S+E   +                  IP   +
Sbjct: 236 ID----VYTKF------------------SYEQAAI----------------PVIPGRKS 257

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +     +                                 + ++ G     G  +S  
Sbjct: 258 RVETFAGADRTYTIEAM---------------------MGDKKALQAGTSHNLGQNFSRA 296

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
               F   +G+  +V   S+ I + R V  +I +  D  G++ P  +AP ++ ++ I K 
Sbjct: 297 FETQFMDENGQLEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPRIAPIQVVIVPIWKK 355

Query: 357 HDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
            D+     +A   +   L + G  V  D+   +  G +F   ++ G P+++ +G + V +
Sbjct: 356 GDEKRVVMEAVASVQNTLKEAGIRVKVDNSELRTPGWKFNFYEMKGVPIRIELGPRDVKN 415

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
             V +  R      G    +S+E   ++++   R    +  L
Sbjct: 416 RSVVLSRRDVPGKQGKEFGISMEPSILVDHIKGRLEEIQASL 457


>gi|94984677|ref|YP_604041.1| prolyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|114152189|sp|Q1J0W2|SYP_DEIGD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94554958|gb|ABF44872.1| prolyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 497

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 162/450 (36%), Gaps = 79/450 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S  F     E  + A++A +  +    ++           P G    +N+   + +   
Sbjct: 23  QSVDFNDWYNEVVKKADLADNSPVAGAMVVK----------PYGTALWENIQRWLDDRFK 72

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
            TG   +  PTL   +    E+   + +  E+  +     ++  +  +  PT E ++  +
Sbjct: 73  ATGHESLIFPTLIPMNFITKEADHVEGFAPELFTVDRIGTEQLTEPYVLRPTSETIIGYM 132

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   + SYR+LPF  YQ    FR ELR     +R+ EF   + ++   + E ++    ++
Sbjct: 133 WSGWLNSYRDLPFLHYQWGSVFRAELR-TKAFLRTSEFYWHEGHTAHASEEEARREVRQI 191

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                      DL HEF                           
Sbjct: 192 L--------------------------DLYHEFC-------------------------- 199

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                   + +           S+     +     E      + ++ G   Y G  +S  
Sbjct: 200 -------RDILALPVVRGEKTASERFAGAVATYSIEGMMRDGKALQSGTSHYLGQNFSKA 252

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  + ++ Y    S+ I + R++ A+I +  D  G+I P  +AP ++ +I +   
Sbjct: 253 FDVKFQTREQREEYAYTTSWAI-SSRIIGAIIMTHGDDFGLIMPPRIAPIQVVVIPVSRK 311

Query: 358 DQVCRDACE--KIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           +   +   E  K+   L   G  V  D   G   G ++   +L G P+++ +G + +   
Sbjct: 312 ENFDQMVAEGEKLAHELRAQGLRVKVDRREGVTNGFKYNDWELKGVPVRIELGPRDLEQG 371

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V +K+R    +E +  EE I   ++R  +
Sbjct: 372 VVVVKNRNAEEKETLPREEAIRGMANRLDS 401


>gi|116100417|gb|ABJ65563.1| Prolyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 615

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 145/239 (60%), Gaps = 2/239 (0%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE  + G
Sbjct: 1   MLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREEFEKIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R  +KSY
Sbjct: 61  AVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRDAVKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +Y  IF
Sbjct: 121 KQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +D++ 
Sbjct: 181 TRAGLEFKAIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDEIPEDVME 237



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 389 AVVGANEDGYHLTGVNPERDFKAEYVDIRKVKEGEISPDGQGV--LQFARGIEIGHIFKL 446

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 447 GTRYSESMGANVLDENGRAVPIIMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWG 506

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +AP+ + LI +   D+      +++ A L+  G DV  DD  E++GS+F+ +DL
Sbjct: 507 INFPKELAPYDVHLITVNTKDEEANALTDRLEAALAAEGYDVLIDDRNERVGSKFSDSDL 566

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + TG   +++ + +I   +
Sbjct: 567 IGLPIRVTVGKK-ASEGVVEVKIKATGDTIEVNADNLIETLA 607


>gi|145220122|ref|YP_001130831.1| prolyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|259511614|sp|A4SFS0|SYP_PROVI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145206286|gb|ABP37329.1| prolyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 156/440 (35%), Gaps = 82/440 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +    +I           P G    + + A +      
Sbjct: 13  SQWYIDLV----RSAKLADYSDVRGCMVIR----------PNGYAVWEKMQAALDRMFKE 58

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVVTHGGGEELAEKLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TPE S+    +M 
Sbjct: 119 KKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATPEESQEEVMRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
               R++     + + M      +G     E    AD                       
Sbjct: 178 ----RVYKTFAEEYMAMPV---IMGRKTDSEKFAGADET--------------------- 209

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                             E      + ++ G     G  ++   
Sbjct: 210 -------------------------------YCIEAMMQDGKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  +G   YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I I   D
Sbjct: 239 DCQFQTKEGVLDYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLATRQVVIIPILRGD 297

Query: 359 -QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                   E + A L + G   F DD  +   G +FA  +L G P+++ VG + +     
Sbjct: 298 KAAVLAKAESMAAELKENGIPAFVDDSEQNSPGWKFAEYELQGIPVRIEVGPRDIDKGVC 357

Query: 417 EIKHRLTGIREDMSLEEVIN 436
               R T  + ++ L+  + 
Sbjct: 358 IAARRDTLEKTELQLDATLA 377


>gi|74006042|ref|XP_536120.2| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 1
            [Canis familiaris]
          Length = 1534

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 147/450 (32%), Gaps = 52/450 (11%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      +++      E  + G    
Sbjct: 1014 EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1073

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1074 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1133

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E +     ++   Y ++
Sbjct: 1134 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILDLYAKV 1193

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +    L +IP+                V     E + F                  D  +
Sbjct: 1194 YEE--LLAIPV----------------VKGRKTEKEKFAG---------------GDYTT 1220

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    +                  P+   +     +     + G  +S      F+ 
Sbjct: 1221 TIEAFISASGRAIQVPQQVLGGSHAGSPKWDSIPGLQDQGATSHHLGQNFSKMFEIIFED 1280

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      A  +
Sbjct: 1281 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVASVQVVVIPCGITNALSE 1339

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              RDA    C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1340 EDRDALIIKCNDYRRRLLSVNVRVKVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1399

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +  ++  E          +
Sbjct: 1400 QFVAVRRDTGEKLTVADNEAETKLKAILED 1429


>gi|146169598|ref|XP_001017218.2| threonyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|146145134|gb|EAR96973.2| threonyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 882

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 149/469 (31%), Gaps = 58/469 (12%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           L   +   RD      +  L T   HQ S G   + P G    + +  ++R++    G  
Sbjct: 331 LRQEELAKRDHRNIGKQQELFT--FHQFSPGCAFFYPNGAHIYNKLMEVLRKQYKIRGYS 388

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P L  A LW  SG +D Y + M  L + +++   + P +      +F S  +SYR+
Sbjct: 389 EVITPNLFDAQLWKISGHWDKYKENMFLLKN-DNEEHGFKPMNCPAHCLMFDSIQRSYRD 447

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  +    +  R+E+     G+ R R F   DA+ F  T +               ++ 
Sbjct: 448 LPLRYADFGVLHRNEVHGALSGLTRVRRFQQDDAHIF-CTMDQIMEEIKNALDFIDYMYS 506

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G K   +   + P       E    A+    +   +          +   +   I + 
Sbjct: 507 LFGFKY-SLALSTRPDNYIGEIEMWDQAENALKKGLEAFGKPWAIKAKDGAFYGPKIDIQ 565

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVGHIFYFGTKYSLPMS------ 299
                       T  +          + +    +  IE        T+ S+P+S      
Sbjct: 566 LYDAFDRGHQCGTIQLDFNLPIRFNLQYRAPENKDDIEKQRKKQESTEESVPLSQEEKKK 625

Query: 300 --------------------------------------ATFKGADGKDHYVQMGSYGIGA 321
                                                 A      G    V +    IG+
Sbjct: 626 LEQQISEGESADSLSHKKSKKSTDSSAQSQASEKKYVVAPHHLKLGFQRPVILHRAVIGS 685

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                A++     GK   WP  ++P ++ +  I A      D  + +  RL   G  V  
Sbjct: 686 FERFLAILCEQTAGK---WPFWLSPKQLIICPITAK---VNDFAQDVADRLKVEGYKVAV 739

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDM 429
           D     I  +   A L  +    +VG +      V+++ R  T  +E M
Sbjct: 740 DLSESTIQKKVRNAQLEQYNYIAVVGEEEKRGGYVDLRARDTTKDQERM 788


>gi|260771311|ref|ZP_05880237.1| prolyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260613627|gb|EEX38820.1| prolyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 541

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 95/194 (48%), Positives = 130/194 (67%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI + + G+Y+WLP G + L  V  I+R+E +R GAIE  +P +Q  +LW E+GR +  G
Sbjct: 1   MIRKLASGLYTWLPTGLRVLRKVENIVRQEIDRAGAIETLMPVVQPFELWEETGRSEKMG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RPRFGVM
Sbjct: 61  PELLRFTDRHVRPFVLSPTAEEVITALVRNEVSSYKQLPLNLYQIQTKFRDERRPRFGVM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REF M DAYSFDL  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+ S EF
Sbjct: 121 RAREFSMMDAYSFDLDKQGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGNGSQEF 180

Query: 211 IVLADTGETQVFCS 224
            VLA++GE  +  S
Sbjct: 181 HVLAESGEDLIVFS 194



 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 336 DGKHYFGINWGRDVALGKVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKM 395

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           + +  G DGK+  ++MG YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +  H 
Sbjct: 396 NCSVLGPDGKNVILEMGCYGIGVSRVVAAAIEQNNDKYGIIWPDAIAPFQVAIVPMNMHK 455

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A EK+YA LS  G DV +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 456 SERVQQAAEKLYAELSAAGIDVLFDDRKERPGVMFSDMELIGVPHTIVIGDRSMDEGNFE 515

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +  +++++++ +   + +
Sbjct: 516 YKNRRNGEKTAIAIDQIVEHIKAQLA 541


>gi|330836102|ref|YP_004410743.1| Prolyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
 gi|329748005|gb|AEC01361.1| Prolyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
          Length = 586

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 134/227 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P  A+   ++L+LR G I Q   GI++ LPLG +++  + +IIR+E
Sbjct: 1   MRMSALFSKTLREAPSGADAKGYELLLRAGFIRQLGAGIFTMLPLGYRSVKKIESIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +  AD+W  +GRY S  KEM R  DR  + M+   THEE +TD+ + 
Sbjct: 61  MDAIGGQEILMPVVNPADIWKSTGRYYSIDKEMSRFQDRVGRDMVLAMTHEEAVTDVAKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RD+ RPR G++R REF MKD+YSFD    G +  Y   + +
Sbjct: 121 EIDSYKRLPQLVYQLQTKWRDDPRPRAGLIRVREFTMKDSYSFDRDQAGMEKQYRAHYSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF   GL    + ++SG +GG ++HE++ L+  GE  +      
Sbjct: 181 YFRIFGHAGLPVTVVGSDSGMMGGKIAHEYMYLSPVGEDTIITCPGC 227



 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 16/188 (8%)

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
               +       ++G+EVG+IF  GT+YS  M   ++  DG    V MGSYGIG  R++A
Sbjct: 397 HGCPVCGEPLCVSKGVEVGNIFQLGTRYSEAMGCLYQDEDGVRKPVIMGSYGIGVGRMLA 456

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            + E  HD  G+  P +VAP+++ L+++   +QV     + IY RL+  G +V +DD  E
Sbjct: 457 CLAEEYHDDSGLALPVTVAPYQVHLVSLVKDEQV----GDTIYGRLTHAGIEVLYDDRKE 512

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-----------LTGIREDMSLEEVI 435
             G +FA ADLLG P+++ VG++ + + KVE+K R               +E ++L + +
Sbjct: 513 SAGVKFADADLLGMPIRITVGNRSLKEGKVEVKLRSQPDEIHTFDLADLEKEIIALADSM 572

Query: 436 NY-ASHRF 442
                 + 
Sbjct: 573 EKNLKEKI 580


>gi|303237443|ref|ZP_07324009.1| proline--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482393|gb|EFL45422.1| proline--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 493

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 172/466 (36%), Gaps = 88/466 (18%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + AE  S     L+++  +  Q   +G     P G    + + A + +    TGA
Sbjct: 5   LKELTKRAENYSQWYNDLVIKADLAEQSPVRGCMVIKPYGYAIWEKMQAQLDKMFKETGA 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    + ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLRSNEEGNAVEVDPSAKLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I+SYR+LP    Q     R E+R R   +R+ EFL ++ +    T 
Sbjct: 125 PTSETIIWNTYKNWIQSYRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGH----TA 179

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++        + L+                            V AD  E  +      
Sbjct: 180 HATREEAVDEAKTMLK----------------------------VYADFAEQWLAIPVVQ 211

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               + SEN  F   +   +I                               + ++ G  
Sbjct: 212 G---VKSENERFAGALDTYTIEAM------------------------MQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     TF   + K  YV   S+G+ + R+V A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLVGALIMTHSDDNGLVLPPKIAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQ 403
           ++ ++ I    +      EK+      L   G  V +D+   ++ G +FA  +L G P++
Sbjct: 304 QVVIVPIFKGAEQLAAITEKLQPVINELRAKGISVKFDNADNKRPGFKFAEYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + +G + + ++ +EI  R T  +E++S + ++          +  +
Sbjct: 364 LAMGGRDLENNTIEIMRRDTLEKENVSFDGIVERIEKLLEEIQENI 409


>gi|229107523|ref|ZP_04237275.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
 gi|228675915|gb|EEL31008.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
          Length = 476

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 155/453 (34%), Gaps = 77/453 (16%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             TG   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 61  KETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCVRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E         +R FL    + +             
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWEKT-------TRPFLRTTEFLWQ------------ 161

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                                           E   + +TGE     ++      + +  
Sbjct: 162 --------------------------------EGHTIHETGEES--QAETLNILNLYASF 187

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +    I +    +     +A     +  +             + ++ G    FGT +S 
Sbjct: 188 CEEYLAIPVIKGQKTEKEKFAGAKATYTIESL-------MHDGKALQTGTSHNFGTNFSE 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 241 AFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPLQVVIVPIAQ 299

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +   +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 300 HKEGVLEKATELQGRIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R T  +E +S++++              L
Sbjct: 359 VLVRRDTKEKEFISMDQLEERIPSLLEEIHHSL 391


>gi|76563495|gb|ABA46079.1| prolyl-tRNA synthetase [Streptococcus agalactiae A909]
          Length = 612

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 2/237 (0%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E  + G
Sbjct: 1   MLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQEFEKIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY
Sbjct: 61  AVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRDAVKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +Y  IF
Sbjct: 121 KQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            R GL    +  + G +GG  S EF+ +              +D  IPS +   +D+
Sbjct: 181 TRAGLDFKGIIGDGGAMGGKDSQEFMAVTPNRTD--LNRWLVLDKTIPSIDDIPEDV 235



 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D      +N   +              E   D     K    RGIE+GHIF  
Sbjct: 389 AVSGANQDGYHFTGVNPERDFTAEYVDIREVKEGEISPDGKGTLKFS--RGIEIGHIFKL 446

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+ + + MG YGIG  R+++AVIE                   G
Sbjct: 447 GTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWG 506

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  E++GS+F+ +DL
Sbjct: 507 INFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDL 566

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + +G   ++  + +I    
Sbjct: 567 IGLPIRVTVGKK-ASEGIVEVKIKASGDTIEVHADNLIETLE 607


>gi|312131710|ref|YP_003999050.1| prolyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311908256|gb|ADQ18697.1| prolyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 490

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 165/448 (36%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+ R  +    + +G     P G    + +   + +    TG      P         
Sbjct: 17  NELVKRANLAENSAVRGCMVIKPYGYAIWEKMQRALDDMFKETGHTNAYFPLFIPKSFLS 76

Query: 81  VESGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE   +                    + ++ +I  PT E V+ + +++ +
Sbjct: 77  KEASHVEGFAKECAVVTHYRLKNDPDGKGVVVDPEAKLEEELIVRPTSETVIWNSYKNWV 136

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T E +    N+M    L
Sbjct: 137 QSHRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATREEAVAETNQM----L 191

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++                                    F  +      +    T  +  
Sbjct: 192 EVY----------------------------------AKFAEEWMAVPVVRGRKTANERF 217

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              +  +                              + ++ G   + G  ++      F
Sbjct: 218 AGADDTLCIEAL---------------------MQDGKALQAGTSHFLGQNFAKAFDVKF 256

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           +   GK  +V   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++   
Sbjct: 257 QDKTGKQEFVWGTSWGV-STRLMGALIMAHSDDLGLVLPPKLAPIQVVIVPIYKGEEQLN 315

Query: 363 DACEKIY---ARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              E++      L   G  V +DD    + G +FA  +L G P+++ VG++ + + +VE+
Sbjct: 316 AIFERMEPTIKSLKVQGISVKFDDDDSARPGWKFAEYELKGVPVRIAVGARDLENHQVEV 375

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E +S++ +  Y  +  ++ +
Sbjct: 376 ARRDTLSKESVSMDGLDQYLINLLNDIQ 403


>gi|164659836|ref|XP_001731042.1| hypothetical protein MGL_2041 [Malassezia globosa CBS 7966]
 gi|159104940|gb|EDP43828.1| hypothetical protein MGL_2041 [Malassezia globosa CBS 7966]
          Length = 815

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/465 (16%), Positives = 142/465 (30%), Gaps = 72/465 (15%)

Query: 8   LPILQENPRDAEIASHK-LMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L        + E + H+ L +  G+   H  S G    +P G + L  V  +IR+  +  
Sbjct: 309 LQQYSARMSELEKSDHRHLGIAQGLFFAHDSSPGSPFVMPHGMRLLRKVERVIRDLYDTF 368

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEM-----LRLADRNDKAMIYGPTHEEVMTDIFR 119
           G  E+  P L  + LW +SG ++ Y ++M           +D      P +      +F 
Sbjct: 369 GYDEVQTPQLFRSSLWKQSGHWEKYREDMFSAQGFSCCGAHDDVFGLKPMNCPGHCVMFA 428

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SYR LP    +     R+E      G+ R R F   DA+ F  TP         M 
Sbjct: 429 HQPRSYRELPMRLAEFSPLHRNEASGALSGLTRVRRFHQDDAHVF-CTPAQVATEIESML 487

Query: 179 VSYLRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +   G      +   + P       E    A+    +   +          +  
Sbjct: 488 HMLSLAYRVFGFGDRFELVLSTRPPNFLGQVEAWDHAEASLKEALDASGKPWTLNEGDG- 546

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      + +L D++    + +   ++      FG +Y+  
Sbjct: 547 -------------------AFYGPKIDIRLVDAMGRKHQTATIQLDFQLPERFGLEYATS 587

Query: 298 MSA--TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                T +   G    V +    +G+     A++     G    WP  ++P +  +I   
Sbjct: 588 SQVPSTEQVRPGYARPVMIHRAILGSFERFLAILVEQCKGW---WPFWLSPRQAVVIPAF 644

Query: 356 AHDQV----CRDACEKIYARLS-----------------KVGCDVFWDDM---------- 384
           + ++       D    +   LS                      +               
Sbjct: 645 SGNEETHQAVADYAAHVQYTLSGHTHETRETRSPFLSPTMAHQTLQVPSRTRFQIELPPQ 704

Query: 385 -----GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                G+ +G +   A L  F   +IVG +   +  V ++ R   
Sbjct: 705 SLVPAGDTLGKKVRHAQLSRFNFFLIVGPQEAKNRTVSVRMRDEK 749


>gi|50286281|ref|XP_445569.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524874|emb|CAG58480.1| unnamed protein product [Candida glabrata]
          Length = 462

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 151/448 (33%), Gaps = 61/448 (13%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRY 86
           R  +  Q + G   +LP G K  + + + ++ +Q    G  E+  P +    LW +SG +
Sbjct: 47  RLFITDQITPGSAFFLPNGTKIYNKLVSFMKTQQKHLFGFKEVITPLIYRKSLWEQSGHW 106

Query: 87  DSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           ++Y ++M R+   +   +     P +      IF     SY +LP  +       R+E  
Sbjct: 107 ENYKEDMFRVEGNDLTKEEYGLKPMNCPGHCVIFNRFDHSYNDLPIRYSDFSPLHRNEAS 166

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS----YLRIFHRLGL-----KSIP 194
               G+ R R F   D + F  TP+  +             Y ++F   G       S  
Sbjct: 167 GALSGLTRVRMFHQDDGHIF-CTPDQVEVEILNCLKLVDMCYTKVFPISGEQSKSKDSYE 225

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P       E    A+     V             +                   
Sbjct: 226 IHLSTRPEHYIGELESWDHAEEVLRSVLEKSSKPWKLNAGDG------------------ 267

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQ 313
             A      +  + D   +  +V+   ++    F    +++L     +K  D      + 
Sbjct: 268 --AFYGPKLDIMVKDHHGKQHQVATIQLD----FQLPQRFNL----RYKDRDNSYKRPIM 317

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++    A++  S+ GK   WP  + P +  +I +  +++      ++++ +L 
Sbjct: 318 IHRAVLGSVERFMAMLVESNGGK---WPFWLNPNQAIVIPLNTNNEEQVKMAKQLHDKLR 374

Query: 374 -KVGCD--------------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            K+  +                 D   E +G +   A    +   +IVG   V   K  +
Sbjct: 375 GKLEIEDNLKPVPISHVSYNADIDIRAEPVGYRIKDAITKNYSYLIIVGDNEVKAQKFSV 434

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R       M   E++       SN +
Sbjct: 435 RTRENRTPVLMDTNEILEKFKDLESNYK 462


>gi|150007636|ref|YP_001302379.1| prolyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262381848|ref|ZP_06074986.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|301310397|ref|ZP_07216336.1| proline--tRNA ligase [Bacteroides sp. 20_3]
 gi|166980137|sp|A6LAP3|SYP_PARD8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149936060|gb|ABR42757.1| prolyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262297025|gb|EEY84955.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|300831971|gb|EFK62602.1| proline--tRNA ligase [Bacteroides sp. 20_3]
          Length = 493

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 159/449 (35%), Gaps = 85/449 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
             L+++  +    + +G     P G    + +  I+ +    TG +    P L       
Sbjct: 20  QDLVIKADLAENSAVRGCMVIKPYGYAIWEKMQRILDDMFKETGHVNAYFPLLIPKSFLS 79

Query: 81  VESGRYDSYGKEM-----LRLADRND-------------KAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE       RL   +D             + +I  PT E ++ + +R+ I
Sbjct: 80  KEAEHVEGFAKECAVVTHYRLKTNHDGTGVVVDPAAKLEEELIIRPTSETIIWNTYRNWI 139

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E       MR+R FL    + +                   
Sbjct: 140 QSYRDLPILCNQWANVMRWE-------MRTRLFLRTAEFLWQ------------------ 174

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                     E      T E     +K   D             
Sbjct: 175 --------------------------EGHTAHATREEAEIEAKKMQDVYAN--------- 199

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            + N +         + S+     L     E      + ++ G   + G  +      TF
Sbjct: 200 FAENYMAMPVIKGVKSESERFAGALDTYTIEAMMQDGKALQAGTSHFLGQNFGKAFDVTF 259

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK  Y    S+G+ + R++ A+I S  D  G++ P  +AP ++ ++ I    +   
Sbjct: 260 IDKNGKSDYAWATSWGV-STRLIGALIMSHSDDNGLVLPPHLAPIQVVIVPIYRSAEQLT 318

Query: 363 DACEKIY---ARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              EK+    A+L  +G  V +DD   ++ G +FA  +L G P+++ +G + + ++ +E+
Sbjct: 319 QISEKVAGIVAKLKALGISVKYDDADNKKPGWKFAEYELKGVPVRLAMGGRDLENNTIEV 378

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRP 447
             R T  +E ++ + +  Y  +     + 
Sbjct: 379 MRRDTLEKETITCDGIEEYVKNLLEEIQA 407


>gi|159904581|ref|YP_001548243.1| prolyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|259511605|sp|A9A787|SYP_METM6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159886074|gb|ABX01011.1| prolyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 460

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 165/459 (35%), Gaps = 87/459 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEV 113
           +  + T   E   P L   +L  + G     +  E+  +        +  +   PT E  
Sbjct: 46  KLLDETNHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRPTSETT 105

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKH 172
           M  + +  IK + +LP   YQ+   FR E +    ++R RE +  K+A++   T E    
Sbjct: 106 MYYMMKQWIKVHTDLPMKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHATKEDCDA 165

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +    Y                      G+   E  V           SK       
Sbjct: 166 QITEALNLY----------------------GEFFDEICVP-------YIISKRPEWDKF 196

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P  +                               FD++  +     + +++G +   G 
Sbjct: 197 PGADY---------------------------TMAFDTIYPDG----KTMQIGTVHNLGQ 225

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++      F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI
Sbjct: 226 NFAKTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLI 284

Query: 353 NI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  K  +++  D  +++   L      V  DD   + G ++   ++ G PL++ +G + 
Sbjct: 285 PLLFKGKEEIVMDKIKELNRTLKSE-FRVLLDDRDIRPGRKYNDWEIKGVPLRIELGPRD 343

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + +  I  R TG +  +    ++       S  +  L
Sbjct: 344 IENGQALIVRRDTGEKITVEYSNILEEVEKIVSMYKENL 382


>gi|317131365|ref|YP_004090679.1| prolyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469344|gb|ADU25948.1| prolyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 480

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 150/452 (33%), Gaps = 77/452 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +  M           G     P      +N+  ++  +  
Sbjct: 16  MEEDFAKWYTDIVKKAELVDYSSMR----------GCLFIRPYAYAIWENIQKVLDAKFK 65

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     ++ ++ +   PT E +  + 
Sbjct: 66  ETGHENVYMPLFIPESLLQKEKDHIEGFAPEVAWVTHGGGEKLEERLCVRPTSETLFCEH 125

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   + SYR+LP  + Q     R E +     +RS EFL ++ ++   T   ++    +M
Sbjct: 126 YSHIVHSYRDLPKLYNQWCSVVRWE-KTTRPFLRSLEFLWQEGHTLHETEAEAREETTRM 184

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L I+                                    FC +      +    T
Sbjct: 185 ----LNIYAD----------------------------------FCEQVLAMPVVKGRKT 206

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           + +                                       + ++ G   Y G  ++  
Sbjct: 207 EKEKFAGAVDTCSIEAM---------------------MHDGKALQSGTSHYLGDGFTHA 245

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               + G D    Y    S+G+   R++ A+I    D  G++ P  +AP ++ ++ +  H
Sbjct: 246 FDIQYTGRDNTLKYPFQTSWGVT-TRLIGAIIMVHGDDSGLVLPPRIAPTQLVIVPVAMH 304

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +   ++  RL K    V  D      G +FA  ++ G PL++ +G + +  ++  
Sbjct: 305 KPGVLEKANELLVRLQKT-LRVKLDASDNSPGWKFAEYEMKGVPLRLEIGPRDIEQNRCV 363

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R    + ++SL+E+         +    L
Sbjct: 364 VVRRDDRQKIEVSLDELETRLPAILDDVHEAL 395


>gi|291522045|emb|CBK80338.1| prolyl-tRNA synthetase, family I [Coprococcus catus GD/7]
          Length = 477

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 152/427 (35%), Gaps = 69/427 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           +++ G+I   S KG  +  P G    +N+   + +    TG   + +P      L   E 
Sbjct: 26  VVKAGLIGYTSVKGCMAIKPAGYAIWENIQHELDKRFKATGVENVYMPMFIPESLLQKEK 85

Query: 84  GRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +         + M   PT E +  D +   I+SYR+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTHGGLNELQERMCVRPTSETLFCDFYAKEIQSYRDLPKMYNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E         +R FL    + +                                    
Sbjct: 146 RWEKE-------TRPFLRSREFLWQ----------------------------------- 163

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                    E      T E     ++  ++        DF + +    ++          
Sbjct: 164 ---------EGHTAHATAEESKERTEQMLNLYA-----DFCEQVLAMPVIRGQKTEKEKF 209

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +        ++L  +     + ++ G    FG  ++      +   + K  YV   S+G+
Sbjct: 210 AGAEATYTIEALMHDG----KALQSGTSHNFGDGFARAFGIQYTDKENKLQYVHQTSWGM 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ A+I    D  G++ P  +AP ++ +I I  H +   +  E++  RLS  G  V
Sbjct: 266 T-TRLIGAIIMVHGDDNGLVLPPMIAPTQVIVIPIAQHKEGVLEKAEELRDRLS--GFRV 322

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D    + G +FA A++ G P++V +G K +  ++  +  R TG +  +SL+E+     
Sbjct: 323 KLDATDNKPGWKFAEAEMRGIPVRVEIGPKDIEANQAVLARRDTGEKIVVSLDELETKVD 382

Query: 440 HRFSNNR 446
                 +
Sbjct: 383 ELLKEIQ 389


>gi|295698550|ref|YP_003603205.1| prolyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157056|gb|ADD79501.1| prolyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 583

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/210 (47%), Positives = 142/210 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+Y L  L +   ++EI S +LM+R+GMI + S GIY WLP G K ++ + +IIR+E
Sbjct: 1   MKTSQYLLSTLTDYQVNSEILSDRLMMRSGMIRKLSSGIYYWLPTGVKVIEKLKSIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G IE S P +Q   LW +SGR D YG+E+ R+ DR  +  I  PT+EE +  + + 
Sbjct: 61  MDSIGLIEFSSPLIQPMKLWKKSGRLDQYGEELFRINDRKSRPFILSPTNEESIIYLMKH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP + YQI+ KFRDELRP+FG++RS+EF+MKDAYSF    +  + +Y  M  +
Sbjct: 121 EIQSYKQLPISLYQIRTKFRDELRPQFGIIRSKEFIMKDAYSFHTNLQSLQKTYEMMLDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           Y RIF+R+GL    + AE+G IGG+LSHEF
Sbjct: 181 YKRIFNRIGLDFRVILAENGFIGGNLSHEF 210



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 1/165 (0%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE+GHIF  G KYS  M+A F+   G+   + MG YGIG  RV+AA+IE +HD  GI+WP
Sbjct: 412 IEIGHIFQIGNKYSRAMNAFFQDERGERKLITMGCYGIGIGRVIAAIIEQNHDINGIVWP 471

Query: 342 DSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           D +APF+++++ I  +   + R     +Y  L K   +V +DD            +L+G 
Sbjct: 472 DVLAPFQVAILPINMYKFNIVRKVSNDLYCDLKKNNFEVIFDDRQIGFSKMLKDIELIGV 531

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P  +I+  + +  + +  ++R     E + L   +++    F  N
Sbjct: 532 PNILIINKENLLSNNIIYRNRSNHSEEMIHLSCTLSFLKKLFIKN 576


>gi|195978861|ref|YP_002124105.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975566|gb|ACG63092.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 613

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/210 (43%), Positives = 134/210 (63%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E ++ G
Sbjct: 1   MLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQEFDKIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY
Sbjct: 61  AVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRDAVKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +Y  IF
Sbjct: 121 KQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            R GL    +  + G +GG  S EF+ +  
Sbjct: 181 TRAGLDFKGIIGDGGAMGGKDSQEFMAITP 210



 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D   +  +N   +              E   D         ARGIE+GHIF  
Sbjct: 389 AVAGANKDGYHLTGVNPNRDFQAEYADIREVKEGETSPDGHGV--LQFARGIEIGHIFKL 446

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKG 337
           GT+YS  M+A     +G+   + MG YGIG  R+++AVIE                   G
Sbjct: 447 GTRYSDSMAANILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWG 506

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P  +APF + LI +   DQ  +D  EK+ A L   G DV  DD  E++GS+F+ +DL
Sbjct: 507 INFPKELAPFDVHLITVNVKDQEAQDLTEKVEASLMAKGYDVLTDDRNERVGSKFSDSDL 566

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G P++V +G K  ++  VEIK + TG   ++  + +I   
Sbjct: 567 IGLPIRVTIGKK-AAEGIVEIKIKATGDSIEVHADSLIETL 606


>gi|88602429|ref|YP_502607.1| prolyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|114152211|sp|Q2FLY5|SYP_METHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88187891|gb|ABD40888.1| prolyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 478

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 153/425 (36%), Gaps = 69/425 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G      V  I+RE  +     E   P L    +   E+     + 
Sbjct: 30  VRYPVKGLYVWFPFGFGIRKRVYGILRELLD-RDHEETLFPLLIPEPEFMKEAEHIKGFE 88

Query: 91  KEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        D  +   PT E  +  ++   ++S+ +LP   YQI   FR E +  
Sbjct: 89  NEVYWVTHGGTTPLDIKLALRPTSETAIYPMYALWVRSHADLPIKVYQIVNTFRYETKHT 148

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE                                                    
Sbjct: 149 RPLIRLREITS----------------------------------------------FKE 162

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +H      +  E QV            +   +F D +++  ++ +           +   
Sbjct: 163 AHTVHATWEDAERQV--------EDAIARYREFYDRLNIPVLISKRPDWDKFPGADYTIA 214

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +   +P+      R +++G + + G  +S   S  ++   G+  Y     YGI + R +A
Sbjct: 215 VDTIMPDG-----RTLQIGTVHHLGDHFSKTFSIQYEDTKGQQQYCHQTCYGI-SERSIA 268

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           A+I    D +G++ P  VAP +I ++ +  K  ++    A E +   L   G  V  D  
Sbjct: 269 ALISMHGDDRGLMLPPEVAPVQIVIVPVIMKKREEEIMQAAELLEKELQNAGYRVKIDTR 328

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G+++   ++ G PL++ +G + + +  V    R  G +E +   ++I   + + + 
Sbjct: 329 DLRPGAKYYYWEMRGVPLRLEIGPRDLDNGVVMGVLRSGG-KESLPRADIIAEVNRKMTE 387

Query: 445 NRPVL 449
              +L
Sbjct: 388 FTAIL 392


>gi|149373221|ref|ZP_01892041.1| prolyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149354255|gb|EDM42826.1| prolyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 492

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 166/451 (36%), Gaps = 89/451 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A + ++   TG      P      ++ 
Sbjct: 17  NELVVKADLAENSGVRGCMVIKPYGFGIWERMQAELDKKFKETGHSNAYFPLFVPKSMFE 76

Query: 82  -ESGRYDSYGKEMLRLA-------DRN------------DKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +        D N            ++ +I  PT E ++   ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKNDDENAGKLIVDPNAKLEEELIVRPTSEAIIWSTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++                   
Sbjct: 137 VQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHT------------------- 176

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                           A T + +     + M         DF  
Sbjct: 177 --------------------------------AHTTKKEAIEESERMMNVYADFVQDFMA 204

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I  +  +  +      A      E L            + ++ G   + G  ++      
Sbjct: 205 IPVVKGLKTESERFAGAEETYCIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-- 359
           F   +GK  YV   S+G+ + R++ A++ +  D KG++ P ++AP ++ ++ I  +D+  
Sbjct: 257 FATKEGKQEYVWGTSWGV-STRLMGALVMTHSDDKGLVLPPNLAPDQVVIVPIYRNDEQF 315

Query: 360 -VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +A  ++ A L   G  V +D+    + G +F   +L G P+++ +G K + +   E
Sbjct: 316 DAVSEAANELMAALRAKGVRVKFDNRDTHKPGWKFNEYELKGVPVRIAIGPKDLENGTFE 375

Query: 418 IKHRLTGIREDMSLEEVINYAS---HRFSNN 445
           +  R T  +E +S + ++++         NN
Sbjct: 376 VARRDTLTKEVLSKDVIVDHVVGLMDEIQNN 406


>gi|255013835|ref|ZP_05285961.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|256839822|ref|ZP_05545331.1| prolyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|298375581|ref|ZP_06985538.1| proline--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|256738752|gb|EEU52077.1| prolyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|298268081|gb|EFI09737.1| proline--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 493

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 159/449 (35%), Gaps = 85/449 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
             L+++  +    + +G     P G    + +  I+ +    TG +    P L       
Sbjct: 20  QDLVIKADLAENSAVRGCMVIKPYGYAIWEKMQRILDDMFKETGHVNAYFPLLIPKSFLS 79

Query: 81  VESGRYDSYGKEM-----LRLADRND-------------KAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE       RL   +D             + +I  PT E ++ + +R+ I
Sbjct: 80  KEAEHVEGFAKECAVVTHYRLKTNHDGTGVVVDPAAKLEEELIIRPTSETIIWNTYRNWI 139

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E       MR+R FL    + +                   
Sbjct: 140 QSYRDLPILCNQWANVMRWE-------MRTRLFLRTAEFLWQ------------------ 174

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                     E      T E     +K   +             
Sbjct: 175 --------------------------EGHTAHATREEAEIEAKKMQEVYAN--------- 199

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            + N +         + S+     L     E      + ++ G   + G  +      TF
Sbjct: 200 FAENYMAMPVIKGVKSESERFAGALDTYTIEAMMQDGKALQAGTSHFLGQNFGKAFDVTF 259

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK  Y    S+G+ + R++ A+I S  D  G++ P  +AP ++ ++ I    +   
Sbjct: 260 IDKNGKSDYAWATSWGV-STRLIGALIMSHSDDNGLVLPPHLAPIQVVIVPIYRSAEQLA 318

Query: 363 DACEKIY---ARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              EK+    A+L  +G  V +DD   ++ G +FA  +L G P+++ +G + + ++ +E+
Sbjct: 319 QISEKVAGIVAKLKALGISVKYDDADNKKPGWKFAEYELKGVPVRLAMGGRDLENNTIEV 378

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRP 447
             R T  +E ++ + +  Y  +     + 
Sbjct: 379 MRRDTLEKETITCDGIEEYVKNLLEEIQA 407


>gi|253744023|gb|EET00284.1| Threonyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 695

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 164/463 (35%), Gaps = 52/463 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L    E   +A+   H+ + +     M H+++ G   ++  G +    + A IRE 
Sbjct: 262 SKDQLDKHIELLEEAKRRDHRNLAKEMDLFMTHKYAPGAPMFMNNGTRIYRKLEAFIREL 321

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
            +     E+  PT  + DLW  SG    Y + M  L   ++ D      P +      ++
Sbjct: 322 LHEFDYEEVMTPTFLNTDLWGISGHLQHYKENMFLLERKEKTDPQYGLKPMNCPCHCLLY 381

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +SH  S + LP    +  +  R+EL     G+ R   F   DA+ F  T +  +     +
Sbjct: 382 KSHHHSVQELPIRMAEFGVVHRNELSGALSGLTRVVRFEQDDAHIF-CTVDQIEQEMTGL 440

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R++   G+ +  +     P     S E    A+    +V  +        P +  
Sbjct: 441 IEFIKRVYTPFGI-AFALSLSLRPEKKMGSDELWDRAEGTLRKVLTNTGLDFKENPGDG- 498

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  L D+L    +     ++    F   +K    
Sbjct: 499 -------------------AFYGPKIDVHLTDALGRQHQCGTIQLD----FNLPSKERFD 535

Query: 298 MSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +  +           +H V +    +G++    A++  +  G+   W   ++P +I +I 
Sbjct: 536 LLYSVYDEKTTSVKYEHPVMIHRAILGSVERFMAILIENTGGRFPFW---ISPRQIIVIP 592

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  H +      + +  R    G  V  D   E++  + AVA    +   ++VG++    
Sbjct: 593 L--HGEEIATYAKTVRERYHSKGYYVDIDMSPEKMEKKIAVAWSKKYNFIMVVGAQEKET 650

Query: 414 SKVEIKHR----------LTGIREDMSLEEVINYASHRFSNNR 446
             V +  R              R+ ++LEE  +      +NNR
Sbjct: 651 GSVALSGRTLSAHIGEKDNQRARKVLTLEET-DALLAELTNNR 692


>gi|306821412|ref|ZP_07455017.1| proline--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550534|gb|EFM38520.1| proline--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 482

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 164/431 (38%), Gaps = 68/431 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +T M+     KG     P G    +N+ + + +    TG      P L    L   E 
Sbjct: 28  IRKTDMVDYSPVKGFMVIKPYGFAIWENIQSYLDKRFKDTGHKNCYFPLLIPESLLNKEK 87

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     +   + +   PT E ++  ++   +++YR LP+ + Q     
Sbjct: 88  EHVEGFAPEVAWVTHGGQEELGERLCVRPTSETIICSMYSKWLRTYRELPYLYNQWCSVV 147

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+ EFL ++ ++   T   ++    +M    L I+  L  K + +   +
Sbjct: 148 RWE-KTTRPFLRTSEFLWQEGHTLHETEAEAQEETLQM----LSIYTELAEKILAIPVVT 202

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G                               I SE+  F    +  +I        A  
Sbjct: 203 G-------------------------------IKSESEKFAGAHATYTIEAMMHDGKALQ 231

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           S         +     +   +  ++                T++  DGK       S+G+
Sbjct: 232 S--------GTSHNLGQHFTKAFDI----------------TYQSRDGKLENPYHTSWGV 267

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + R++ A+I    D +G++ P  +AP ++ +I I+   +   D   +IY+ L  +G  V
Sbjct: 268 -STRLIGAIIMVHGDNRGLVLPPEIAPIQVVIIPIQQQKEGVLDKANEIYSSLKNLGIRV 326

Query: 380 FW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD     G +F   ++ G PL++ +G + + ++ V I  R T  ++ +S++++    
Sbjct: 327 ELDDDSKNSTGWKFNEYEMKGVPLRIEIGPRDIQNNIVSISRRDTLEKDQISIDDIEKSV 386

Query: 439 SHRFSNNRPVL 449
               ++ +  L
Sbjct: 387 PSLLADIQRGL 397


>gi|118575566|ref|YP_875309.1| prolyl-tRNA synthetase [Cenarchaeum symbiosum A]
 gi|152016594|sp|A0RUI8|SYP_CENSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118194087|gb|ABK77005.1| prolyl-tRNA synthetase [Cenarchaeum symbiosum A]
          Length = 476

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 143/429 (33%), Gaps = 70/429 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           +++L+  +      KG+    P G    +++   +  +    G     +P L    L   
Sbjct: 19  QVVLKAELADYAPVKGLIVLRPDGYSIWESIRTSLDVKLAARGVRNGFLPVLIPESLLGK 78

Query: 82  ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E   +  +  E+  +    +  +       PT E +   ++   IKS+R+LP        
Sbjct: 79  EKEHFAGFNPEVFWVTHSGENKVGDRLALRPTSETLAYSLYSKWIKSWRDLPLRINFWNT 138

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E++     +R+ EFL ++                                      
Sbjct: 139 ALRAEIKSTKPFLRTSEFLWQEG------------------------------------- 161

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     H     ++  E++V    +     +  +          +   +   A Y 
Sbjct: 162 ----------HTVHACSEEAESEVAAILELYRETVEGDLAIPVITGRKSEKEKFVGAVYT 211

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T +                  R +++G   + G  +S P    F   D  +H+    S+
Sbjct: 212 TTMESM------------MPDGRALQMGTSHFLGQNFSRPFEVKFADKDNVEHFAWQTSW 259

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK 374
           G+ + R++ A+I    D KG++ P  VAP ++ +I I    +       A E + A L K
Sbjct: 260 GL-SWRLIGAMIMVHGDDKGLVLPPKVAPLQVVIIPISYSGEEGAQVLAAAEGMEAELLK 318

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     D   E   G +F   ++ G P+++ +G + + D    +  R  G +  + L+ 
Sbjct: 319 AGIRARTDKREELTPGFKFHDWEMRGVPVRIEIGPRDLKDGSAVLATRHDGKKSKVPLDG 378

Query: 434 VINYASHRF 442
                    
Sbjct: 379 AAVNIEEEL 387


>gi|156842346|ref|XP_001644541.1| hypothetical protein Kpol_1052p30 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115186|gb|EDO16683.1| hypothetical protein Kpol_1052p30 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 463

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 150/442 (33%), Gaps = 61/442 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
             S G   +LP G K  + +   ++ +++++ G  E+  P +    LW +SG +++Y ++
Sbjct: 54  PISPGSVFFLPNGAKIFNKLVQFMKLQQEHKFGFKEVITPIIYRKSLWEQSGHWENYKED 113

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           M ++   D + +     P +      IF+   +SY  LP          R+E      G+
Sbjct: 114 MFKVEGQDISKEEYGLKPMNCPGHCMIFKKFDRSYHELPLRLSDFSPLHRNEASGALSGL 173

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLK--------SIPMRAESG 200
            R R+F   D + F  T E  +    K        + R             S  ++  + 
Sbjct: 174 TRVRKFHQDDGHIF-CTKEQVEEEIIKCLKMVDLCYSRVFNFNKSKNNDSSSYIIKLSTR 232

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P       E    A+     +             +                     A   
Sbjct: 233 PDKYIGDLEIWNHAEDTLKSILEKSGKKWDINEGDG--------------------AFYG 272

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGI 319
              +  + D   +  +V+   ++    F    +++L     +K  D      + +     
Sbjct: 273 PKIDILVKDHNNKTHQVATIQLD----FQLPERFNL----RYKDKDNSYKRPIMIHRAAF 324

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS------ 373
           G++    A++  S++GK   WP  + P +  +I +    +      +++ ++L       
Sbjct: 325 GSLERFIAMLIDSNEGK---WPFWLNPRQAMIIPVNTKIKSHVSESKQLASKLRGESADL 381

Query: 374 ---------KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                        +V  D   E +G +   A +  +   +I+G + V   +  I+     
Sbjct: 382 DDLTPVPFNSFHFNVDVDLRSEPVGYRIKDAIMKNYSYLIIIGDEEVETGRYAIRTSEDR 441

Query: 425 IREDMSLEEVINYASHRFSNNR 446
             + ++ +E+ +       N +
Sbjct: 442 RLQHLTEDEIFDKFMKLEKNYK 463


>gi|312198148|ref|YP_004018209.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311229484|gb|ADP82339.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 411

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 148/437 (33%), Gaps = 46/437 (10%)

Query: 22  SHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R   +         G+  WLP G      +   IR  + R G   +  P L   
Sbjct: 3   DHRKLGRELDLFDTDPLIGAGLPYWLPDGATVRHTLEEYIRAVERRAGYQHVYSPVLGKR 62

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +L+  SG +  Y  +M    D   + ++  P+       I+RS   SYR LP    ++  
Sbjct: 63  ELYEISGHWSHYSDDMFPPMDLGGEQVVLRPSLCPHHALIYRSRSHSYRELPLRIAELGG 122

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            +R EL     G+ R R   + DA+ F  T E                +  LGL     R
Sbjct: 123 MYRSELSGVLGGLTRVRAIQLNDAHIF-CTLEQVADEARAALDLIRHAYEALGLTPSRYR 181

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 GG                 + +   +     +  T+  D        E      
Sbjct: 182 LSLPGPGG----------------KYVAAPDLWRRSVALLTEVLDRSG--LPYEAAEGEA 223

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A      + ++ D       +S   I+      F  +Y         G DG  H   M  
Sbjct: 224 AFYGPKIDVQVTDGAGRESTLSTVQIDFHQPERFDLRY--------VGPDGARHRPVMVH 275

Query: 317 YGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             I     R VA ++E      G   P  +AP ++ ++ I A +     A   +  R + 
Sbjct: 276 RSIIGSVERAVAHLLEQH----GGALPAWLAPIQLVILPISASE---LPAAVALTRRCAD 328

Query: 375 VGCD--VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +G    V   D G  +G++  +A L   P Q ++G+K  SD  V ++ R           
Sbjct: 329 LGLRAQVLGPDRG-SLGARVRLARL--VPYQAVLGAKEASDGHVSLRLRDGHRLGPQPAG 385

Query: 433 EVINYASHRFSNNRPVL 449
           +V+       +++   L
Sbjct: 386 DVLARVGALVASHSTRL 402


>gi|134045917|ref|YP_001097403.1| prolyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|172044143|sp|A4FYA4|SYP_METM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|132663542|gb|ABO35188.1| prolyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 460

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 165/459 (35%), Gaps = 87/459 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEV 113
           +  + T   E   P L   +L  + G     +  E+  +        +  +   PT E  
Sbjct: 46  KLLDETNHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRPTSETT 105

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKH 172
           M  + +  IK + +LP   YQ+   FR E +    ++R RE +  K+A++   T E    
Sbjct: 106 MYYMMKQWIKVHTDLPMKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHATKEDCDA 165

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +    Y                      G+   E  V           SK       
Sbjct: 166 QITEALNLY----------------------GEFFDEICVP-------YIISKRPEWDKF 196

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P  +                               FD++  +     + +++G +   G 
Sbjct: 197 PGADY---------------------------TMAFDTIYPDG----KTMQIGTVHNLGQ 225

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++      F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI
Sbjct: 226 NFAKTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLI 284

Query: 353 NI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  K  +++  D  +++   L      V  DD   + G ++   ++ G PL++ +G + 
Sbjct: 285 PLLFKGKEEIVMDKIKELNNTLKSE-FRVHLDDRDIRPGRKYNDWEIKGVPLRIELGPRD 343

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + +  I  R TG +  +    ++       S  +  L
Sbjct: 344 IENGQALIVRRDTGEKITVEYSNILEEVEKIVSMYKENL 382


>gi|254495081|ref|ZP_05108005.1| prolyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85819431|gb|EAQ40588.1| prolyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 492

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/468 (15%), Positives = 164/468 (35%), Gaps = 89/468 (19%)

Query: 10  ILQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           + ++  + AE  S    +L+++  +    + +G     P G    + + A +      TG
Sbjct: 1   MSKKLTKRAEDYSKWYNELVVKADLAENSAVRGCMVIKPYGFAIWEKMQAELDRMFKETG 60

Query: 66  AIEMSVPTLQSADLWV----------------ESGRYDSYGKEM--LRL--ADRNDKAMI 105
                 P      L+                    R  +       LR+    + ++ ++
Sbjct: 61  HENAYFPLFVPKSLFEAEEKNAEGFAKECAVVTHYRLQNDPDNEGKLRVDPEAKLEEELV 120

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             PT E ++ + ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ +    
Sbjct: 121 VRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGH---- 175

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T   +K            ++                                    F   
Sbjct: 176 TAHATKAEAVAEAKQMQDVYAE----------------------------------FAEN 201

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                 I    +D +                                       + ++ G
Sbjct: 202 FMAMPVIKGVKSDSERFAGAEDTYTIEAL---------------------MQDGKALQAG 240

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              + G  ++      +   +GK  YV   S+G+ + R++  +I +  D  G++ P  +A
Sbjct: 241 TSHFLGQNFAKAFDVKYTSKEGKQEYVWATSWGV-STRLIGGLIMTHSDDNGLVLPPKLA 299

Query: 346 PFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFP 401
           P ++ ++ I  +D+      +K+ A    L K G  V +D+    + G++FA  +L G P
Sbjct: 300 PIQVVIVPIYKNDEQLEAISDKVNAISIELGKKGISVKYDNRDTFRPGAKFAEYELKGVP 359

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++ +G++ + +  +E+  R T  +  + + + ++Y      + +  L
Sbjct: 360 VRIALGARDLENGTLEVARRDTLEKNTIDINDAVSYIDGLLKDIQNNL 407


>gi|225011920|ref|ZP_03702358.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225004423|gb|EEG42395.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 492

 Score =  240 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 155/433 (35%), Gaps = 85/433 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A + +    TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDKMFKATGHENAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  A------DRN-------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                  D N             ++ ++  PT E V+ + +++ I+SYR+LP    Q   
Sbjct: 93  THYRLKNDENNPGKLIVDPNAKLEEELVVRPTSEAVIWNTYKTWIQSYRDLPILINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       MR+R FL    +   L  EG                            
Sbjct: 153 VVRWE-------MRTRLFLRTAEF---LWQEG---------------------------- 174

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                           A   + +       M+        ++  I  +  +  +      
Sbjct: 175 --------------HTAHATKAEAMTEAKLMNQVYADFVENYMAIPVIQGVKTESERFAG 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A      E L            + ++ G   + G  ++      +  A+G   YV   S+
Sbjct: 221 AEETFCIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVKYATAEGGLEYVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC---EKIYARLSK 374
           G+ + R++ A+I +  D  G++ P ++AP ++ +I I   ++         EKI   L +
Sbjct: 273 GV-STRLIGALIMTHSDDNGLVLPPNLAPTQVVIIPIYRGEEEQNKVAATAEKIKVALEE 331

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               V +D+  + + G +F   +L G PL++ +G K + +  VEI  R    +E +S +E
Sbjct: 332 QNIRVKFDNRDKFKPGYKFNDYELKGVPLRIAIGPKDLQNGTVEIARRDNLTKEVVSQDE 391

Query: 434 VINYASHRFSNNR 446
           +++Y S + +  +
Sbjct: 392 IVDYISSQLAQIQ 404


>gi|289674658|ref|ZP_06495548.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 172

 Score =  240 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/171 (52%), Positives = 124/171 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  +
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQ 171


>gi|154483386|ref|ZP_02025834.1| hypothetical protein EUBVEN_01089 [Eubacterium ventriosum ATCC
           27560]
 gi|149735896|gb|EDM51782.1| hypothetical protein EUBVEN_01089 [Eubacterium ventriosum ATCC
           27560]
          Length = 579

 Score =  240 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 129/228 (56%), Gaps = 1/228 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK      +E P +  I SH LM+R G I   + GIYS  P  ++    +  IIR+E
Sbjct: 1   MKLSKLVGDRFKERPANCLIDSHALMVRGGYIKNVANGIYSQFPPMKRISQKIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P      LW ESGRY+S G E+LR  DR    M+ G THEE    + R 
Sbjct: 61  MDKLDGQEVLFPVALPGSLWEESGRYESVGSELLRFTDRTGSKMVLGMTHEEASVQLVRE 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +  SY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y K++ +
Sbjct: 121 YANSYAKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLEQYYQKVYDA 180

Query: 181 YLRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R G+  +  ++++SG +GG +SHE+++L   GE  +    + 
Sbjct: 181 YSRIFARCGIPEVAIVKSDSGMMGGSISHEYMLLTPVGEDSIAICPEC 228



 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 115/217 (52%), Gaps = 1/217 (0%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D+ +   N         N   +   A Y   + +    +  +  +     +RGIEVG+IF
Sbjct: 352 DYLVTGANKVDTHYTGFNVERDCPDAKYVDLAKITEGGICPNCGKPVINISRGIEVGNIF 411

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GTKYS  M+ T+   +GK+ Y  MG YGIG  R+ A++ E  HD  G IWP ++AP++
Sbjct: 412 QLGTKYSKAMNFTYTDENGKEQYPIMGCYGIGVGRMAASICEVRHDDYGPIWPITIAPWQ 471

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + L  +++ D  C++  ++IY  L  +G +V +DD   + G+ FA ADLLG P++V+V  
Sbjct: 472 VHLCCLRSDDAECKEKADEIYETLQNMGIEVIYDDRKARPGAMFADADLLGVPVRVVVSP 531

Query: 409 KFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFSN 444
           + ++++ VEI  R     ++   +++ +    +  + 
Sbjct: 532 RNLAENVVEISTRDKSIDKQKTPVDQAVTEVQNIINK 568


>gi|331090802|ref|ZP_08339649.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399910|gb|EGG79569.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 653

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 152/442 (34%), Gaps = 36/442 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      ++ L T  +    +G+   +P G   +  +   + +E+ + G + 
Sbjct: 232 HLEEIKKRDHNKLGREMGLFT-TVDVIGQGLPLLMPKGAAIIQTMQRWVEDEEEKRGYVR 290

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSY 125
              P +   DL+V S  +  Y + M  L D +   ++     P        +++   KSY
Sbjct: 291 TKTPLMAKKDLYVISDHWGHYKEGMFVLGDEDKEGEEVFALRPMTCPFQYYVYKQSQKSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +    FR+E      G+ R R+F + + +   +TPE  +  +          
Sbjct: 351 RDLPCRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLV-ITPEQVEDEFRGCVDLAKYC 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG++       S             LAD      +     M   +        + + 
Sbjct: 410 LTTLGVEEDVTYRLS-------------LADPDNMDKYLGTREMWDEVEDIMRKMLNHLE 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           ++    + T   A      + +  +   +   +    +++    +   ++      +F  
Sbjct: 457 ID--YTEETGEAAFYGPKLDIQAKNVYGKEDTMITIQLDM----FLAERF----DMSFVD 506

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG K     +    +G      A +   + G    W   + P ++ ++ I    +   D
Sbjct: 507 KDGEKKRPYIIHRTAMGCYERTLAWLIEKYAGLFPTW---LCPEQVRVLPI---SEKYHD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G     DD  E+IG +     L   P  ++VG+K   +  V ++ R  
Sbjct: 561 YAHQVLGELRANGIKCTVDDRAEKIGYKIRETRLDKVPYMLVVGAKEEEEKVVSVRSRFL 620

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SL+  I          
Sbjct: 621 GDEGQKSLDTFIADICKEIRTK 642


>gi|315223470|ref|ZP_07865327.1| proline--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314946643|gb|EFS98634.1| proline--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 492

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 157/452 (34%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A +      TG      P       + 
Sbjct: 17  NELVIKADLAESSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHTNAYFPLFVPKSYFE 76

Query: 82  ----------------ESGRYDSYGKE----MLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                              R  +   E    M+    + ++ +I  PT E ++ + +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKADPNEKGKLMVDPEAKLEEELIVRPTSEAIIWNTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E +     KM    
Sbjct: 137 IQSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATKEEAIEEAQKM---- 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++       + +    G      S  F    DT   +                     
Sbjct: 192 MNVYADFVENFMAVPVIKGV--KSESERFAGADDTYCIEAL------------------- 230

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                                                 + ++ G   + G  ++      
Sbjct: 231 ----------------------------------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I    +  
Sbjct: 257 YVSKEGKQEYVWASSWGV-STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYKGAEQL 315

Query: 362 RDA---CEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                  + +   L K    V +DD   +  G +F   +L G P+++ VG + +  +  E
Sbjct: 316 EKVHSHIQPLIEELKKHNISVKFDDRDTQSPGFKFHEYELKGIPVRLAVGQRDIEHNTFE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E ++  +++ +      + +  +
Sbjct: 376 VARRDTLTKETVAGGQIVAHIQQLLEDIQANI 407


>gi|229056233|ref|ZP_04195655.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH603]
 gi|229165394|ref|ZP_04293179.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH621]
 gi|228618078|gb|EEK75118.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH621]
 gi|228721106|gb|EEL72643.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH603]
          Length = 476

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 154/455 (33%), Gaps = 81/455 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             +G   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 61  KESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCIRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSY 174
            F   ++SY +LP  + Q     R E         +R FL    + +    T   +    
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWEKT-------TRPFLRTTEFLWQEGHTIHETAEES 173

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
               ++ L ++                                    FC +      I  
Sbjct: 174 QIETLNILNLY----------------------------------AAFCEEYLAIPVIKG 199

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           + T+ +      +     +                          + ++ G    FGT +
Sbjct: 200 QKTEKEKFAGAKATYTIESL---------------------MHDGKALQTGTSHNFGTNF 238

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S      F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I
Sbjct: 239 SEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPLQVVIVPI 297

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             H +   +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  +
Sbjct: 298 AQHKEGVLEKATELQGRIQKV-ARVKIDASNKTPGWKFNEYEMKGVPIRLEVGPKDIEKN 356

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +V +  R T  +E ++++++              L
Sbjct: 357 QVVLVRRDTKEKEFIAMDQLEERIPSLLEEIHHSL 391


>gi|327401992|ref|YP_004342831.1| Prolyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327317500|gb|AEA48116.1| Prolyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 482

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/422 (21%), Positives = 167/422 (39%), Gaps = 72/422 (17%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
           H+++ +  +  I    KG+Y W P G K    V   +RE  +     E+  P L    +L
Sbjct: 20  HEIIQQAQIMDIRYPVKGLYVWYPFGFKIRQLVYGKLREIMD-RDHDEVYFPALIPETEL 78

Query: 80  WVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E      +  E+  +        D  +   PT E  M  +F+  I+S+ +LP   YQI
Sbjct: 79  GREGEHIKGFEDEVYWVTHGGLTPLDVKLALRPTSETAMYPMFKLWIRSHADLPLKVYQI 138

Query: 136 QLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E +    ++R RE    K+A++   T E    +  ++  +              
Sbjct: 139 VNTFRYETKHTRPLIRLREITSFKEAHTVHRTFE---EAEEQVRKAV------------- 182

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                                                      +F D +++  +V +   
Sbjct: 183 ---------------------------------------GYYKEFYDFLAIPYLVIRRPE 203

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                   +       +P+      R +++G + + G  ++     T++  DG+  +   
Sbjct: 204 WDKFPGAAYTIAFDTVMPDG-----RTMQIGTVHHLGDNFARTFGITYEKPDGEHEFAHQ 258

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARL 372
             YGI + R +AA+I    D  G+I P  V+P +I +I +  K  ++   + CEKI+ RL
Sbjct: 259 TCYGI-SERCIAALISIHGDDLGLILPFEVSPTQIVIIPVLYKGKEKEVLELCEKIFDRL 317

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V  DD  E+ G+++   +L G  +++ VG K V+++ V +  R    +  +S+E
Sbjct: 318 KGFGYRVLLDDSDERPGAKYYRWELKGAAMRIEVGPKEVAENAVVVSFRDERKKFKISVE 377

Query: 433 EV 434
           E+
Sbjct: 378 EL 379


>gi|158319516|ref|YP_001512023.1| prolyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|166980096|sp|A8MLB3|SYP_ALKOO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158139715|gb|ABW18027.1| prolyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 480

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 148/418 (35%), Gaps = 71/418 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG     P G    +N+   + +    TG      P L    L   E+   + +  E+  
Sbjct: 39  KGFMVIKPYGYAIWENIQNYMDKRFKETGHKNCYFPLLIPESLLKKEAEHVEGFAPEVAW 98

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    ++ +       PT E ++ +++   + SYR+LPF + Q     R E         
Sbjct: 99  VTHGGNEELAERLCVRPTSETIICEMYSKWLTSYRDLPFLYNQWCSVVRWEKS------- 151

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL    +   L  EG                H L       +AE+  +         
Sbjct: 152 TRPFLRTSEF---LWQEG----------------HTLHETYEEAQAETLQM-------LN 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +  +T E  +          +  + ++ +      +                        
Sbjct: 186 IYRETAENLLAM------PVVIGQKSEKEKFAGAYATYTMEAL----------------- 222

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G     G  ++     T+   +G+  +    S+G+ + R++  +I  
Sbjct: 223 ----MHDGKALQAGTSHNLGQHFTTAFDITYSDRNGELKHPYHTSWGV-STRLIGGIIMV 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
             D +G++ P  +AP ++ ++ + +H +   D   ++  RL      V  DD      G 
Sbjct: 278 HGDNRGLVLPPGIAPTQVVIVPVASHKEGVLDKANELRDRLKDK-FRVELDDRDNYSPGW 336

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVINYASHRFSNN 445
           +F   ++ G P+++ +G + + +++  +  R    ++ +S   LEE +       +NN
Sbjct: 337 KFNEWEMKGVPIRIEIGPRDIENNQAMLFRRDELEKDAVSLDDLEEAVEKLLEDINNN 394


>gi|154492734|ref|ZP_02032360.1| hypothetical protein PARMER_02371 [Parabacteroides merdae ATCC
           43184]
 gi|154087039|gb|EDN86084.1| hypothetical protein PARMER_02371 [Parabacteroides merdae ATCC
           43184]
          Length = 493

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 165/448 (36%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
             L+++  +    + +G     P G    + +  I+ +    TG +    P L       
Sbjct: 20  QDLVIKADLAENSAVRGCMVIKPYGYAIWEKMQRILDDMFKETGHVNAYFPLLIPKSFLS 79

Query: 81  VESGRYDSYGKEM-----LRLADRND-------------KAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE       RL   +D             + +I  PT E ++ + +R+ I
Sbjct: 80  KEAEHVEGFAKECAVVTHYRLKTNHDGTGVVVDPAAKLEEELIIRPTSETIIWNTYRNWI 139

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E       MR+R FL    + +                   
Sbjct: 140 QSYRDLPILCNQWANVMRWE-------MRTRLFLRTAEFLWQ------------------ 174

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                    H      +  E +           +     DF + 
Sbjct: 175 -----------------------EGHTAHATREEAEIEA--------KKMQGVYADFAEN 203

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +++   +     +   +    +++ ++     + ++ G   + G  +      TF
Sbjct: 204 YMAMPVIKGVKSASERFAGALDTYTIEAMMQDG----KALQAGTSHFLGQNFGKAFDVTF 259

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK  Y    S+G+ + R++ A+I S  D  G++ P  +AP ++ +I I   ++   
Sbjct: 260 IDKNGKSDYAWATSWGV-STRLIGALIMSHSDDNGLVLPPHLAPIQVVIIPIYRSEEQLA 318

Query: 363 DACEK---IYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              EK   I A+L  +G  V +D+   ++ G +FA  +L G P+++ +G + + ++ +E+
Sbjct: 319 QISEKVNGIVAKLKALGISVKFDNADNKKPGWKFAEYELKGVPVRLAMGGRDLENNTIEV 378

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E ++ + +  Y  +     +
Sbjct: 379 MRRDTLEKETVTCDNIETYVQNLLEEIQ 406


>gi|310829146|ref|YP_003961503.1| hypothetical protein ELI_3581 [Eubacterium limosum KIST612]
 gi|308740880|gb|ADO38540.1| hypothetical protein ELI_3581 [Eubacterium limosum KIST612]
          Length = 483

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 147/419 (35%), Gaps = 68/419 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG     P G    +N+     E    TG   M  P L    L   E+   + +  E+  
Sbjct: 39  KGFMVIRPYGYAIWENIQKAYDERFKATGHQNMYFPLLIPESLLKKEAEHVEGFAPEVAW 98

Query: 96  LADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK +       PT E ++  ++   + SYR LPF + Q     R E +     +R
Sbjct: 99  VTKGGDKELAEPLCVRPTSETIICSMYAKWLHSYRQLPFLYNQWCSVVRWE-KTTRPFLR 157

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EFL ++ ++   TPE ++    +M   Y  +     + +IP+                
Sbjct: 158 TSEFLWQEGHTLHETPEEAQEETMQMLNIYREVAED--IMAIPV---------------- 199

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V+    E + F       + + +   D   + S  S         A      +     + 
Sbjct: 200 VVGQKSEKEKFAGAAAT-YTMEALMHDGQALQSGTSHNLGQHFTKAFDITYLDRNNEQAY 258

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P +                                         S+G+ + R++  +I  
Sbjct: 259 PYH----------------------------------------TSWGV-STRLIGGIIMV 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGS 390
             D  G++ P  +AP ++ +I +  H +   D   ++   L      V  DD      G 
Sbjct: 278 HGDDNGLVLPPRIAPTQLVIIPVAQHKEGVLDKAYELKDIL-GAEFRVELDDNDSNSPGW 336

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +F   ++ G P+++ +G + + + +  +  R TG +  ++L+++     +  +  +  L
Sbjct: 337 KFNQWEMKGVPIRLEIGPRDIENGQCVLARRDTGEKVQVALDDITEAVRNLLAEIQQNL 395


>gi|241999440|ref|XP_002434363.1| glutamyl-tRNA synthetase, cytoplasmic, putative [Ixodes scapularis]
 gi|215497693|gb|EEC07187.1| glutamyl-tRNA synthetase, cytoplasmic, putative [Ixodes scapularis]
          Length = 1502

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 150/451 (33%), Gaps = 76/451 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ +  MI  +   G Y   P      +N+   +     + G    
Sbjct: 1005 EAKKEENLPDWYSQVITKAEMIEYYDVSGCYILRPWAYSIWENIKEFLDTRIRKIGVQNC 1064

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P   SA  L  E      +  E+  +    +    + +   PT E VM   +   ++S
Sbjct: 1065 YFPMFVSAQALEREKTHVADFAPEVAWVTRSGNSDLAEPIAIRPTSETVMYPSYAKWVQS 1124

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E +     K+   Y  +
Sbjct: 1125 HRDLPLQLNQWCNIVRWEFKHPQPFLRTREFLWQEGHTAFATREEAVEEVYKILDIYTAV 1184

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +    L ++P+       G     E    AD   T        ++  +P+          
Sbjct: 1185 YEE--LLALPVVR-----GRKTEKEKFAGADFTTT--------VEAYVPA---------- 1219

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                             S RGI+     + G  +S      F+ 
Sbjct: 1220 ---------------------------------SGRGIQGATSHHLGQNFSKMFEIVFED 1246

Query: 305  AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHD 358
             +  +  +    S+G+   R +  V+    D +G++ P  VA +++ ++        + D
Sbjct: 1247 PETREKKFAFQNSWGLT-TRTIGVVVMVHADNQGLVLPPRVACYQVVIVPCGITAAMSED 1305

Query: 359  QVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            Q       C+   A L   G     D       G +F   +L G P++V +G + +   +
Sbjct: 1306 QKAALIKFCQDFEATLDAAGVRCKGDYRDNYSPGWKFNHWELKGVPIRVEIGPRDMQQEQ 1365

Query: 416  VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                 R TG +        +        N +
Sbjct: 1366 FVAVRRDTGEKLTYKTSTAVKEMKDLLENIQ 1396


>gi|225010590|ref|ZP_03701061.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005419|gb|EEG43370.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
          Length = 491

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 154/445 (34%), Gaps = 85/445 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+ +  +      +G     P G    + + A +      TG      P       + 
Sbjct: 17  NELVGKADLAENSGVRGCMVIKPYGYAIWEKMQAALDHMFKETGHENAYFPLFIPKSYFS 76

Query: 81  VESGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHI 122
            E+   D + KE   +                    + ++ +I  PT E ++ D +R  I
Sbjct: 77  KEASHVDGFAKECAVVTHYRLKNAEDGSGVIVDPDAKLEEELIVRPTSETIIWDTYRKWI 136

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E+R R   +R+ EFL +                        
Sbjct: 137 QSYRDLPLLINQWANVVRWEMRTRL-FLRTSEFLWQ------------------------ 171

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                     E      T E  +  ++  M+    +   +F  +
Sbjct: 172 --------------------------EGHTAHATKEEAIAEAEQMME-VYATFAQEFMAV 204

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             +  +  +      A      E              + ++ G   + G  ++     T+
Sbjct: 205 PVIKGLKTESERFAGALETYCIEA--------MMQDGKALQAGTSHFLGQNFAKAFDVTY 256

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK  +V   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I        
Sbjct: 257 ATKEGKQAHVWATSWGV-STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYKGTDQLD 315

Query: 363 DACEKIY---ARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              EK+      L   G  V +D     + G +F   +L G P+++ +G + + ++  E+
Sbjct: 316 AIAEKVAPLVKALKSKGISVKFDQRDTHKPGFKFNEYELKGVPIRLAIGQRDLDNNTFEV 375

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
             R T  +E ++ + ++ +     +
Sbjct: 376 ARRDTLTKETVASDHLVEHVEQLLA 400


>gi|256810346|ref|YP_003127715.1| prolyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793546|gb|ACV24215.1| prolyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 455

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 161/452 (35%), Gaps = 83/452 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+++  IL++    AEI           +    KG   +LP G K       IIR+ 
Sbjct: 1   MEFSEWYSEILEK----AEIYD---------VRYPIKGCGVYLPYGFKIRRYTFEIIRDL 47

Query: 61  QNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMT 115
            +++G  E   P L   DL   E+     +  E+  +        D  +   PT E  + 
Sbjct: 48  LDKSGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETPIY 107

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSY 174
            + +  +K + +LP   YQI   FR E +    ++R RE    K+A++   T E ++   
Sbjct: 108 YMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAEEQV 167

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    Y + F  LG+  +  +                                    P 
Sbjct: 168 KEAISIYKKFFDTLGIPYLISKR-----------------------------------PE 192

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
            +       ++              + VHN                         F   +
Sbjct: 193 WDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQ---------------------NFSKTF 231

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            +         D    Y     YGI + RV+A++I    D KG+I P  VAP +I +I +
Sbjct: 232 EIIFETPTGDKD----YAYQTCYGI-SDRVIASIIAIHGDEKGLILPPIVAPIQIVIIPL 286

Query: 355 --KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             K  + V  +  +++Y +L      V  DD   + G +F   ++ G PL++ +G K + 
Sbjct: 287 IFKGKEDVVMEKAKELYEKLKDK-YRVHIDDRDIRPGRKFNDWEIKGVPLRIEIGPKDIE 345

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + K+ +  R T  +  +   E+        +N
Sbjct: 346 NGKITLFRRDTMEKFQVDESELEEVIEKTLNN 377


>gi|124486203|ref|YP_001030819.1| prolyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|152112928|sp|A2ST96|SYP_METLZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124363744|gb|ABN07552.1| prolyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 477

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 77/432 (17%), Positives = 159/432 (36%), Gaps = 73/432 (16%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
           ++++ R  +  +    KG+Y W P G    ++   ++R   N     E   P L    + 
Sbjct: 19  NEVIRRADIMDVRYPVKGLYVWYPFGFALRNHTYTLLRSLLN-RDHEETLFPLLIPETEF 77

Query: 80  WVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     +  E+  +        D  +   PT E  +  ++   ++S+ +LP   YQ+
Sbjct: 78  MKEAEHIKGFEDEVYWVTHGGLSPLDVKLALRPTSETAIYPMYALWVRSHADLPLKLYQV 137

Query: 136 QLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E +    ++R RE     ++++     +           +  ++ + LGL +  
Sbjct: 138 VNTFRYETKHTRPLIRLREITSFMESHTVHTDWD----------DANKQVEYELGLATEF 187

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R    PI                     S+       P  +                  
Sbjct: 188 YRDLGVPI-------------------IISRRPDWDKFPGAD------------------ 210

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                        F    +      R +++G + + G  +S   + T++  +G+      
Sbjct: 211 -------------FTMAIDAVMPDGRTLQIGTVHHLGDHFSTTYNITYEDVNGEQKLASQ 257

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARL 372
             +GI + R +AA+I    D KG++ P +VAP ++ +I I           A EK+ + L
Sbjct: 258 TCFGI-SERCIAAIIAVHGDDKGLVLPATVAPTQVVIIPIIVGKRGDEIMAAVEKLESEL 316

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V  D    + G+++   +L G PL+V +G + + ++++   +RL G++  +  E
Sbjct: 317 KAAGLRVKTDARDMRPGAKYYHWELHGVPLRVELGPRDLDNNQLVCANRL-GVKTTIPRE 375

Query: 433 EVINYASHRFSN 444
              +        
Sbjct: 376 NAADSVKRLLDE 387


>gi|256424918|ref|YP_003125571.1| prolyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256039826|gb|ACU63370.1| prolyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 493

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 165/448 (36%), Gaps = 87/448 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++ G+    + +G     P G    + +  ++  +   TG      P          E
Sbjct: 19  LIIKGGLADYSAVRGCMVIKPYGFGLWEGMRDVLDAKFKETGHQNAYFPLFIPKSFLSKE 78

Query: 83  SGRYDSYGKEMLRLADRN--------------------DKAMIYGPTHEEVMTDIFRSHI 122
           +   D + KE   +                        ++ +I  PT E ++ + ++  I
Sbjct: 79  AEHVDGFAKECAVVTHHRLMQNPDPNVKGLVVDPEAKLEEELIVRPTSETIIWNTYKDWI 138

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E+R R   +R+ EFL +                        
Sbjct: 139 QSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQ------------------------ 173

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                     E      T E  +  ++  ++        DF + 
Sbjct: 174 --------------------------EGHTAHATAEEAIAETRQMLEVYA-----DFAEN 202

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +V    +P    +   +    ++L ++     + ++ G   + G  ++      F
Sbjct: 203 YMALPVVRGVKSPAERFAGALDTYCIEALMQDG----KALQAGTSHFLGQNFAKAFDVKF 258

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--- 359
              + K  YV   S+G+ + R++ A++ +  D  G++ P  +AP ++ ++ I   ++   
Sbjct: 259 SNKENKQEYVWATSWGV-STRLIGALVMAHSDDDGLVLPPRIAPLQVVIVPIYKGEEQKS 317

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 ++I + L K+G  V +DD    + G +FA  ++ G P+++ +G++ + ++  E+
Sbjct: 318 KIDAKVDEIISGLKKLGIRVKYDDSDNARPGWKFAEYEMKGVPVRIALGARDLENNVAEV 377

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E +SL+ +    S      +
Sbjct: 378 ARRDTKTKESLSLDGLAERISALLEEIQ 405


>gi|119357673|ref|YP_912317.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|152016595|sp|A1BHL6|SYP_CHLPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119355022|gb|ABL65893.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 481

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 159/448 (35%), Gaps = 82/448 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +    +I           P G    + +   +      
Sbjct: 13  SQWYIDLV----RSAKLADYSDVRGCMVIR----------PNGYAIWEKMQTALDRMFKE 58

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVVTHGGGEELAEKLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TP        +  
Sbjct: 119 KKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATP----EESQEEV 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           V  + ++                                  + F         I  + TD
Sbjct: 174 VRMINVY----------------------------------KTFAENYMALPVIIGKKTD 199

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +                                      ++ ++ G     G  ++   
Sbjct: 200 SEKFAGAVDTWCIEAM---------------------MQDSKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  DGK  YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I I   D
Sbjct: 239 DCQFQTRDGKLDYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLATRQVVIIPILKGD 297

Query: 359 QVCR-DACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +    +    I   LS  G   F DD  +   G +FA  +L G PL++ +G + + +   
Sbjct: 298 KAAVCEKAHAISRTLSANGIPAFVDDSEQNSPGWKFAEYELQGIPLRIELGPRDIQNGTC 357

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  R T  + +++L++ ++ +     N
Sbjct: 358 IVARRDTLEKTELALDDTLSVSISEILN 385


>gi|189347188|ref|YP_001943717.1| prolyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|259511580|sp|B3EE36|SYP_CHLL2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189341335|gb|ACD90738.1| prolyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 481

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 159/451 (35%), Gaps = 80/451 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ +     +  R A++A +  +    +I           P G    + + A +     
Sbjct: 8   RSQDYSQWYIDLVRSAKLADYSDVRGCMVIR----------PNGYAIWEKMQAALDAMFK 57

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDI 117
            TG +    P          E+   + +  E   +     + +       PT E ++   
Sbjct: 58  ETGHVNAYFPLFIPESYIAKEAEHIEGFAPECAVVTHGGGEELAEKLYVRPTSETIIWAS 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E +     +M
Sbjct: 118 YKKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATKEEASEEVLRM 176

Query: 178 FVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              Y +     + L  I        +G     E    AD                     
Sbjct: 177 ITIYKKFAEEYMALPVI--------MGRKTESEKFAGADET------------------- 209

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                                               E      + ++ G   + G  ++ 
Sbjct: 210 ---------------------------------FCIEAMMQDGKALQAGTSHHLGQNFAK 236

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F+ + G+  +V   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I I  
Sbjct: 237 AFDCQFQTSAGELDFVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLASRQVVVIPILR 295

Query: 357 HDQ-VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            D+    +  + I   L K G   F D   +   G +FA  +L G PL++ +G + ++  
Sbjct: 296 GDKTAVLEQADAIVCTLKKHGIPAFVDSSDQNSPGWKFAEYELQGIPLRIELGPRDLAGK 355

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           K  +  R T  + ++ L++  +       N+
Sbjct: 356 KCVVARRDTLEKTELPLDDTFSMQVSEILNS 386


>gi|331003535|ref|ZP_08327032.1| prolyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412376|gb|EGG91767.1| prolyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 479

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 150/427 (35%), Gaps = 67/427 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           +L+  ++   S KG     P G    +N+   I      TG     +P      L   E+
Sbjct: 26  VLKAELVDYTSVKGCLVIRPAGYAIWENMKNEIDRRFKETGIENCYLPMFIPESLLQKEA 85

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     +  ++ +   PT E +  D +   +KSYR+LP    Q     
Sbjct: 86  DHVEGFAPEVAWVTHGGLEELEERLCVRPTSETLFCDYYSKVVKSYRDLPQLLNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E         +R FL                                           
Sbjct: 146 RWEKT-------TRPFLR------------------------------------------ 156

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  S EF  L   G T    +K+  D  +       D      +I           
Sbjct: 157 -------SREF--LWQEGHTIHATAKEAHDRTVQMLEVYADFFEKDLAIPVVRGMKTDKE 207

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                E  +    E      + ++ G   YFG  ++     TF   D +   V   S+G+
Sbjct: 208 KFAGAEATY--TIEALMHDGKALQSGTSHYFGDGFAKAFDVTFTDKDNQIKTVFETSFGV 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ AVI    D  G+  P  +AP ++++I + AH +   +A   +  RL   G  V
Sbjct: 266 T-TRIIGAVIMVHGDDSGLKLPPHIAPVQVNIIPVAAHKEGVLEAANDLKNRLIAAGVRV 324

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +FA +++ G PL++ +G K + +++     R TG +  +SLE V N A 
Sbjct: 325 KLDDSEKSPGFKFAESEMRGIPLRIEIGPKDIENNQCVFVRRDTGEKTFVSLENVENDAK 384

Query: 440 HRFSNNR 446
               N +
Sbjct: 385 ECLENIQ 391


>gi|332220155|ref|XP_003259223.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 2
           [Nomascus leucogenys]
          Length = 588

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 137/416 (32%), Gaps = 56/416 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------- 96
            D +  + + E  R G  E+  PTL S  LW +SG ++ Y ++M  +             
Sbjct: 202 RDQLRQLFKAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQS 261

Query: 97  --ADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
             + R+        P +      +F    +S+R LP          R E      G+ R 
Sbjct: 262 DDSTRHITDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGSLRGLTRL 321

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F  T +  +            ++  LG     +   + P G         
Sbjct: 322 RCFQQDDAHIFCTT-DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPC 376

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D  E  +  +      P                  +  +   A      +  L D+L 
Sbjct: 377 LWDQAEQVLKQALKEFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALG 419

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIES 331
              +     ++    F    ++       +KG  G  +  V +    +G+M  +  V+  
Sbjct: 420 RPHQCGTIQLD----FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSMERLLGVLAE 471

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGS 390
           S  GK   WP  ++PF++ +I +    +   +   +    L   G     D D G  +  
Sbjct: 472 SCGGK---WPLWLSPFQVVVIPVGTEQE---EYAREAQQSLQAAGLVSDLDADSGLTLSR 525

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   A L  +  Q +VG K  S   V I+ R      +  L E +        N R
Sbjct: 526 RIRQAQLAHYNFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 580


>gi|305664978|ref|YP_003861265.1| prolyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88707390|gb|EAQ99635.1| prolyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 491

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 154/448 (34%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++L+++  +      +G     P G    + + A + +    TG      P       L 
Sbjct: 17  NELVVKADLAENSGVRGCMVIKPYGFAIWEKMQAGLDKMFKETGHENAYFPLFIPKSYLS 76

Query: 81  VESGRYDSYGKEM-----LRLADRN-------------DKAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE       RL +               ++ +I  PT E ++ D +R  I
Sbjct: 77  KEASHVEGFAKECAVVTHYRLKNDESGKGIIVDPDAKLEEELIVRPTSETIIWDTYRKWI 136

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T    K +  +      
Sbjct: 137 QSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATE---KEAIEEAEQMM- 191

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                        V AD  E             I    T+ +  
Sbjct: 192 ----------------------------HVYADFAE------NHMAVPVIKGIKTESERF 217

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                                                + ++ G   + G  ++      F
Sbjct: 218 AGAIETYCIEAL---------------------MQDGKALQAGTSHFLGQNFAKAFDVKF 256

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK  YV   S+G+ + R++ A++ +  D  G++ P  +AP ++ ++ I    +   
Sbjct: 257 ATKEGKQEYVWATSWGV-STRLMGALVMTHSDDSGLVLPPKLAPIQVVIVPIYRGLEQLD 315

Query: 363 DACEK---IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              EK   +   L   G  V +D     + G +F   +L G P+++ +G + + +   E+
Sbjct: 316 AISEKVGPLVKELRAKGISVKYDSRDTHKPGFKFNEYELKGVPVRLAIGQRDMENGTYEV 375

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +  +  +EV++       + +
Sbjct: 376 ARRDTFEKVTIPEDEVVSKIEFLLEDIQ 403


>gi|304314752|ref|YP_003849899.1| prolyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588211|gb|ADL58586.1| prolyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 465

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 163/454 (35%), Gaps = 81/454 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    AEI                KG++ W+P G +   N   I++   +
Sbjct: 4   FSEWFHNILEE----AEIIDQ---------RYPVKGMHVWMPHGFRIRKNTLNILKRILD 50

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
                E+  P L    +L  E+     +  E+  +      +  + +   PT E VM  +
Sbjct: 51  -RDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 109

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++S+ +LP  FYQI   FR E +    ++R RE                       
Sbjct: 110 FALWVRSHTDLPMRFYQIVNTFRYETKHTRPLIRVREITT-------------------- 149

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        +H     AD  E QV                
Sbjct: 150 --------------------------FKEAHTIHATADEAEEQV--------ERAIEIYR 175

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +F D + +  ++ +           +       +P+ K      +++G +   G  ++  
Sbjct: 176 EFFDSLGIPYLITKRPPWDKFPGSDYTMAFDTLMPDGK-----TLQIGTVHNLGQTFART 230

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--K 355
               F+  +G+  YV    YG+ + RV+A+VI    D  G+  P  VA  ++ ++ +  K
Sbjct: 231 FEIKFENPEGEHEYVHQTCYGL-SDRVIASVIAVHGDESGLCLPPEVAAHQVVIVPVIFK 289

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +AC  +   L   G  V  DD   + G ++   ++ G PL+V +G + + ++ 
Sbjct: 290 KAADEVMEACRDLRDSLGDAGFRVHLDDRDLRAGRKYYEWEMRGVPLRVEIGPRDLENNS 349

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             I  R TG +    L+ + +      ++    L
Sbjct: 350 AVISRRDTGEKITADLDGIQDTLRDLMNDILENL 383


>gi|269303377|gb|ACZ33477.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 568

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E  +  L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
             Y +IF RLGL    + A+ G IG   S EF VL   GE  +
Sbjct: 181 SGYSKIFDRLGLAYAIVTADGGKIGKGKSEEFQVLCSLGEDTI 223



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 2/192 (1%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
               Y               P +     +GIEV HIF  GT+Y+      F+   G+   
Sbjct: 379 PPPQYGDFLLAEEGDTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFQDEHGQTQQ 438

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG+YGIG  R +AA +E   D +GI+WP ++APF I++      D V ++  E +Y  
Sbjct: 439 CWMGTYGIGVGRTLAACVEQLADDRGIVWPKALAPFSITI-AFNGGDTVSQELAETLYHE 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +   DD  E++G +   +DL+G P ++I+G  + S    EI+ R +G +  +S 
Sbjct: 498 LQSQGYEPLLDDRDERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR-SGEKYTVSP 556

Query: 432 EEVINYASHRFS 443
           E    +  +  +
Sbjct: 557 EAFPTWCQNHLA 568


>gi|288560211|ref|YP_003423697.1| prolyl-tRNA synthetase ProS [Methanobrevibacter ruminantium M1]
 gi|288542921|gb|ADC46805.1| prolyl-tRNA synthetase ProS [Methanobrevibacter ruminantium M1]
          Length = 468

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/439 (20%), Positives = 163/439 (37%), Gaps = 83/439 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL++    AEI   +  ++         G+  WLP G +       I R+  +
Sbjct: 4   FSEWFHEILEK----AEITDSRYPIK---------GMSVWLPYGFQIRRACLNIYRDLLD 50

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
                E+  P L   +   + G     +  E+  +        ++ +   PT E  M  +
Sbjct: 51  SE-HDEVLFPLLIPEEELAKEGIHVKGFEDEVYWVTHGGQKELNEKLAIRPTSETAMYPM 109

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNK 176
           F   ++S+ +LP   YQ+   FR E +    ++R RE     +A++   +PE +      
Sbjct: 110 FSLWVRSHIDLPIKQYQVVNTFRYETKHTRPLIRVREITTFAEAHTVHSSPEEAAEQVET 169

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  I+  L             +G                    SK  +    P   
Sbjct: 170 GIE----IYKELF----------DEMG---------------IAYLISKRPVWDKFPGAE 200

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                                          FD++  +     + +++G +   G  ++ 
Sbjct: 201 Y---------------------------TMAFDTIMPDG----KTLQIGTVHNLGQTFAK 229

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               TF+  +G   Y     YGI + RV+AA I +  D KG+I P  +AP +I++I I  
Sbjct: 230 TFEITFENKEGNHEYAYQTCYGI-SDRVIAAAIAAHGDEKGLILPPRIAPKQITIIPIIF 288

Query: 357 HD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            D  +     C +I   L   G  V  D    + G +F   +L G PL+  +G + + ++
Sbjct: 289 KDGGEEVMAKCLEIKKSLESKGIRVQMDTRDIRPGKKFFDWELKGTPLRFELGPRDLKNN 348

Query: 415 KVEIKHRLTGIREDMSLEE 433
              +  R TG + ++SLE+
Sbjct: 349 VAILGRRDTGEKIEISLED 367


>gi|225377425|ref|ZP_03754646.1| hypothetical protein ROSEINA2194_03073 [Roseburia inulinivorans DSM
           16841]
 gi|225210771|gb|EEG93125.1| hypothetical protein ROSEINA2194_03073 [Roseburia inulinivorans DSM
           16841]
          Length = 575

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/279 (36%), Positives = 150/279 (53%), Gaps = 5/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D ++ SH LM+R G +   + GIYS ++PL ++    +  IIRE
Sbjct: 1   MKLEKLVGDRFKERPADCQVDSHALMIRGGYMKNVANGIYSSYMPL-RRITRKIEQIIRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E +     E+  P +  A LW ESGRYDS GKE+LR  DRN   M+ G THEE    + R
Sbjct: 60  EMDAIDGQEVQFPVVMPASLWQESGRYDSIGKELLRFTDRNGAPMVLGMTHEEAAVQLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + +SY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   
Sbjct: 120 EYGQSYAKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHK 179

Query: 180 SYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI--PSEN 236
           +Y RI+ R G+   + ++++SG +GG++SHEF++L   GE  +    +         +EN
Sbjct: 180 AYERIYARAGIPEVVSVKSDSGMMGGNVSHEFMLLTPIGEDSIVICNECDYRANMEAAEN 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              ++  ++  + +  T        V      D+    K
Sbjct: 240 IVENETEAMQELTKVHTPEMHTIEQVCEFLHVDAKKSMK 278



 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 103/215 (47%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +   N        LN   E     Y   + V    +     +     +RGIEVG+IF  G
Sbjct: 354 VCGANEVDYHYTGLNMEREFPDVEYVDLAKVVEGGICPCCGKKSLTISRGIEVGNIFQLG 413

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           TKY+  M+ T+   DG      MG YGIG  R+ A++ E+ HD  G IWP S+AP+++ +
Sbjct: 414 TKYTKTMNMTYVDKDGISKNPIMGCYGIGVGRMAASICEAHHDDYGPIWPMSIAPWQVHI 473

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             +    +  R+  + +Y  L   G +V +DD     G++F+ ADLLG P++V+V  + +
Sbjct: 474 CAMNLDKEGVREVADTLYENLQNAGVEVIYDDRSVSAGNKFSDADLLGVPVRVVVSPRNL 533

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +S VE+  R   + E + +E    Y        +
Sbjct: 534 KESVVEVSTRDKSLMEKVPVENAEQYVKDLVEKMK 568


>gi|210623133|ref|ZP_03293599.1| hypothetical protein CLOHIR_01549 [Clostridium hiranonis DSM 13275]
 gi|210153810|gb|EEA84816.1| hypothetical protein CLOHIR_01549 [Clostridium hiranonis DSM 13275]
          Length = 482

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 143/412 (34%), Gaps = 67/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    + +      +   TG      P L    L   E+   + +  E+  
Sbjct: 39  KGFMVIKPYGYALWEKIQEFFDAKIKATGHKNCYFPLLIPESLLTKEAEHVEGFAPEVAW 98

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E ++  ++   +KSYR LP+ + Q     R E         
Sbjct: 99  VTQGGNKTLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKT------- 151

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL    + +                                        G   HE  
Sbjct: 152 TRPFLRTSEFLWQE--------------------------------------GHTLHETY 173

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+     +                     +  + +         + S+          
Sbjct: 174 EEAEKETLDILQ---------------MYKEVCEDLLAMPVIDGQKSESEKFAGGERTYT 218

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++ G   + G  ++     TF   +G   +    S+GI + R++  +I +
Sbjct: 219 IEAMMHDGKALQSGTSHFLGQHFTKAFDITFADREGGMSHPYHTSWGI-STRLIGGLIMT 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
             D +G++ P  +AP ++ +I I A+     +  +++YA L + G  V  DD      G 
Sbjct: 278 HSDNRGLVLPPRIAPTQVMIIPIAANKGGVMEKVDELYAALKEKGARVEVDDRPNYSTGY 337

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +   +++ G P+++ +G K + +++  +  R T  +E +SL+ ++ Y +  F
Sbjct: 338 KLNDSEMKGIPVRIEIGPKDIENNQAMVFRRDTLEKEAVSLDNLVEYVTGLF 389


>gi|124804231|ref|XP_001347941.1| threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|23496195|gb|AAN35854.1|AE014840_2 threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 1013

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/493 (16%), Positives = 158/493 (32%), Gaps = 62/493 (12%)

Query: 2   RRSKY--FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L  L+E   RD       L L      + S G   WLP G K  + +   IR
Sbjct: 512 KKSELVEYLKFLEEAKKRDHRNVGKILNLF-FFEKETSPGSCFWLPHGSKIYNKLIEFIR 570

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E       E+  P + S DLW  SG Y +Y   M      N K     P +      +F
Sbjct: 571 KEYRIRKYEEVISPNVFSCDLWKTSGHYQNYKDCMFLFNVEN-KEWGMKPMNCPGHCLMF 629

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR+LP       +  R+E+     G+ R R F   D++ F  + E  K      
Sbjct: 630 KQLNVSYRSLPVRLADFGVLHRNEISGSLSGLTRVRRFQQDDSHIF-CSMEHIKQEVLNT 688

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +++  G K   +   + P           LA+        + +        +  
Sbjct: 689 LNFLFYVYNLFGFKY-ELFLSTRPKKFIGQISTWNLAEQHLKDALYAANVQWKINEGDGA 747

Query: 238 DF---DDIISLNSIVEQWTA--------------------PYAATSDVHNEKLFDSLPEN 274
            +    DI+  +S+                           Y   ++ + +   +   ++
Sbjct: 748 FYGPKIDILVKDSLNRTHQCGTIQLDFQLPVRFNLQYKNKEYVTNNEKNEKNEKNHDNDD 807

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS-----------------Y 317
              +     + H      +      +     D + + +                      
Sbjct: 808 NVHNNNNYPINHDDLHNNEKKEFKDSQNHNEDKEHNNIHDNHSLKPNINEEGLLKKGFER 867

Query: 318 GIGAMRVVAA-------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            I   R +         ++     GK   W   ++P +  ++ I        D    +Y 
Sbjct: 868 PIIIHRAILGSVERFVAILIEHTAGKLPFW---LSPRQAIVLPIGDK---YNDYANYVYE 921

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM- 429
            L     DV  D     +  +   A L  F   ++VG K ++ + V ++ R     + + 
Sbjct: 922 TLHNNMFDVDLDTSVNTLNKKIREAQLKQFNYILVVGEKELTTNTVTLRDRDDQNNQHVY 981

Query: 430 SLEEVINYASHRF 442
           +++E+IN  +   
Sbjct: 982 TIQELINKFNKLL 994


>gi|222094191|ref|YP_002528248.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221238246|gb|ACM10956.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus Q1]
          Length = 476

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 151/448 (33%), Gaps = 77/448 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             TG   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 61  KATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCIRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E         +R FL    + +             
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWEKT-------TRPFLRTTEFLWQ------------ 161

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                                           E   + +T E     ++      + +  
Sbjct: 162 --------------------------------EGHTIHETAEES--QAETLNILNLYASF 187

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +    I +    +     +A     H  +             + ++ G    FGT +S 
Sbjct: 188 CEDYLAIPVIKGQKTEKEKFAGAKATHTIESL-------MHDGKALQTGTSHNFGTNFSE 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 241 AFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQ 299

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +       ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 300 HKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  R T  +E ++++++          
Sbjct: 359 VLVRRDTKEKEFIAMDQLEERIPALLEE 386


>gi|297191715|ref|ZP_06909113.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721430|gb|EDY65338.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 408

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 143/438 (32%), Gaps = 48/438 (10%)

Query: 22  SHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R  G+         G+  WLP G      +   IR  + R G   +  P L   
Sbjct: 3   DHRKLGRELGLFDTDPLIGAGLPYWLPDGATVRHTLEEYIRSAERRAGYRHVYSPVLGKR 62

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +L+  SG +  Y  +M    D   + ++  P+       I+RS   SYR LP    ++  
Sbjct: 63  ELYEISGHWAHYSDDMFPPMDLGGEQVVLRPSLCPHHAVIYRSRSHSYRELPLRMAELGG 122

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            +R EL     G+ R R   + DA+ F  T +              R +  LG+     R
Sbjct: 123 MYRSELSGVLGGLTRVRAIQLNDAHIF-CTLDQVAEEARAALEMIRRAYEALGITPARYR 181

Query: 197 AESGPIGGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                 GG      E    +    T V                                 
Sbjct: 182 LSLPGPGGKYVAAPEKWKRSTALLTDVLDRSGLPYEAAEG-------------------- 221

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A      + ++ D       +S   ++                  + GADG  H   M
Sbjct: 222 EAAFYGPKIDVQVTDGAGRESTLSTVQVDFHQPEQ--------FDLHYIGADGARHRPVM 273

Query: 315 -GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                IG++    A +   H G    W   +AP +++++ I   +         +  R +
Sbjct: 274 VHRSIIGSVERAVAHLIEQHGGAFPAW---LAPTQVAILPISDAE---LPHAAALARRCA 327

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +G        + G  +G++   A L   P Q ++G+K  +D  V ++ R     +   +
Sbjct: 328 GLGLRAEIAGPERG-TLGARVREARL--VPYQAVIGAKEAADDHVALRLRGGRRLDPQPV 384

Query: 432 EEVINYASHRFSNNRPVL 449
            EV+         +R  L
Sbjct: 385 GEVLTRIVALVDAHRADL 402


>gi|156978155|ref|YP_001449061.1| threonyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|156529749|gb|ABU74834.1| hypothetical protein VIBHAR_06960 [Vibrio harveyi ATCC BAA-1116]
          Length = 394

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 146/426 (34%), Gaps = 40/426 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +     + +L L        + G+  W P G +  +++ + +R   +R+G  E++ P   
Sbjct: 2   KTHREIAEQLDLF--HSEPQAPGMIFWHPNGWRLFESIKSHMRSVYHRSGFQEVNTPVFM 59

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +LW +SG  D + + M    ++  ++  +  P        +++  + S+++LP   ++
Sbjct: 60  KQELWQKSGHIDMFSENMFFGGNQEQQSGYVLKPMSCPAHILLYKRGVHSHKDLPIKLFE 119

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             L  R+E      G +R+R+F   DA+ F    E ++    +      +++   G + I
Sbjct: 120 FGLVHRNESSGSLNGCLRARQFTQDDAHVFCQW-EQAEDEVRQFLQRARKVYAAYGYEHI 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  + P       E  + A      +  S    +                     +  
Sbjct: 179 EVKVSTKPEKALGDDEDWIRAQ----DILVSACIHE-----------------KFHTELQ 217

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYV 312
               A      E              R  + G I  F    +      F   +G  +  V
Sbjct: 218 DGEGAFYGPKIELSL------TDSMGRSWQCGTI-QFDFNLAKRFDVKFTSEEGTFEAPV 270

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G++     ++     G   +W   + P  +++ ++   +       + +  RL
Sbjct: 271 IMHQAMYGSVERWIGILLEMSQGDLPLW---LHPQPVAIASVNHSN---CHFAKIVADRL 324

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +      D     +G +         P  + +G   V +  V IK+R       +S+E
Sbjct: 325 LDIDIHALLDLSKSSMGRKMKRFHKKKIPFVISIGDYEVENDVVSIKNRKEASETQVSME 384

Query: 433 EVINYA 438
            +  Y 
Sbjct: 385 HLAEYI 390


>gi|255089463|ref|XP_002506653.1| prolyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226521926|gb|ACO67911.1| prolyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 620

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 148/429 (34%), Gaps = 80/429 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     +  R+ E+A +     T +I           P G    + +   +  +  
Sbjct: 145 KSQDFSRWYLDVIRECELADYGPARGTMVIR----------PYGYAIWEAIQRWMDADFK 194

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
           ++G      P L        E+   + +  E+  +        ++ ++  PT E ++  +
Sbjct: 195 KSGVQNAYFPQLIPYSFITKEASHVEGFSPELALVTRGGGKELEEPLVVRPTSETIVNHM 254

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    +M
Sbjct: 255 FTQWIQSYRDLPLLINQWANVHRWEMRTR-PFIRTLEFLWQEGHTAHATGEEAEARAVQM 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  + R    +  + A    +G     E    AD                      
Sbjct: 314 IDC----YARF---AETVAAMPVIVGRKSRVESFAGAD---------------------- 344

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                                              E      + ++ G     G  +S  
Sbjct: 345 ------------------------------CTYTIEAMMGDGKALQAGTSHNLGQNFSKA 374

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--- 354
              TF    G+  +V   S+G+ + R++  +I +  D  G+  P  +AP ++ ++ I   
Sbjct: 375 FDTTFLDEKGETRHVYQSSWGV-STRLIGGIIMTHGDDAGLRLPPELAPIQVVVVPIAQK 433

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                   DA   I A L+  G  V  DD      G +FA  ++ G P++V VG K V+ 
Sbjct: 434 NKDKAAVADAANAIAATLTNAGIRVKVDDDDRNSPGWKFAQWEMKGVPIRVEVGPKDVAK 493

Query: 414 SKVEIKHRL 422
               +  R 
Sbjct: 494 DACVVARRD 502


>gi|307328733|ref|ZP_07607905.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306885682|gb|EFN16696.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 412

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 145/439 (33%), Gaps = 50/439 (11%)

Query: 22  SHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R  G+         G+  WLP G      +   IR+ + R G   +  P L   
Sbjct: 3   DHRKLGRELGLFDTDPLIGAGLPYWLPDGATVRHTLEEYIRDAERRAGYRHVYSPVLGKR 62

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +L+  SG +  Y  +M    +   + ++  P+       I+RS   SYR LP    ++  
Sbjct: 63  ELYELSGHWSHYSDDMFPPMELGAEQVVLRPSLCPHHAVIYRSRGHSYRELPLRMAELGG 122

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            +R EL     G+ R R   + DA+ F  T +              R +  LG+     R
Sbjct: 123 MYRSELSGVLGGLTRVRAIQLNDAHIF-CTLDQVADEAGAALEMIRRAYEALGMTPARYR 181

Query: 197 AESGPIGGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                 GG      E    +    T V          +                      
Sbjct: 182 LSLPGPGGKYVAAPEMWRRSTALLTDVLDGSGLPYEAVEG-------------------- 221

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A      + ++ D       +S   ++                  + G DG  H   M
Sbjct: 222 EAAFYGPKIDVQVADGAGRESTLSTVQVDFHQPEQ--------FDLHYIGPDGARHRPVM 273

Query: 315 GSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               I     R VA +IE      G  +P  +AP ++ ++ I    +      E +  R 
Sbjct: 274 VHRSIIGSVERAVAHLIEEH----GGAFPAWLAPTQLVVLPI---SEAELPHAEALVRRC 326

Query: 373 SKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             +G        + G  +G++   A L   P Q +VG++   D +V ++ R     + + 
Sbjct: 327 VDLGLRAELAGPERG-SLGARIREARL--VPYQAVVGAREAGDDRVALRLRDGRRLDPLP 383

Query: 431 LEEVINYASHRFSNNRPVL 449
           + E ++  +     +   L
Sbjct: 384 VGEALSRINALVKAHSNEL 402


>gi|291320287|ref|YP_003515549.1| threonyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752620|emb|CBH40593.1| Threonyl tRNA synthetase [Mycoplasma agalactiae]
          Length = 582

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 149/449 (33%), Gaps = 38/449 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIRE 59
           SK  L        D +   H+ + +   I   S     G   WL  G    + +  ++ +
Sbjct: 164 SKDELDKYLALLADRKERDHRKIGKDMKIFTFSPLAGQGFPIWLENGMYIHNEIKNLVLK 223

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              + G  E+  P   +  L+  SG    Y  +M +     ++ +I  P        ++ 
Sbjct: 224 LDKKYGFTEVLTPHFGAELLYKTSGHLAHYKDDMFKPLLVENETLIPRPMTCPHHIIVYN 283

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LP  + +    +R E      G+ R R  L+ + + F +  +       +M+
Sbjct: 284 TEKHSYRDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHLF-VRYDQIASEVKRMY 342

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I     ++   +                   D+     + + D +     S    
Sbjct: 343 KQIKEILSIFNIEISYISLSLR--------------DSNNKDKYFNNDSIWNKAESM--- 385

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +  ++   +  +     AA      +   D +L     VS   ++              
Sbjct: 386 LEKALNDMKVKYKKVEGEAAFYGPKIDIQIDTALGHEITVSTIQLDFLQPEK-------- 437

Query: 298 MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++   + K+    M   G IG      A++     G    W   +AP ++++I +  
Sbjct: 438 FDLSYIDKNNKEVRPIMIHRGLIGTYERFVAILLEQTKGNLPFW---IAPKQVTIIPVNL 494

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +       +K+  +L      V  DD  E++  +   A +     Q+I+GS  ++ + V
Sbjct: 495 SEN--LSYAKKVAKKLLNSDFRVKIDDSDERLNKKIRNAQVSKSKFQLILGSNEMNSNTV 552

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +         +S+ + I       +N 
Sbjct: 553 SYREYGKEETTTVSINDFIKLLKKLRNNY 581


>gi|210615498|ref|ZP_03290625.1| hypothetical protein CLONEX_02841 [Clostridium nexile DSM 1787]
 gi|210150347|gb|EEA81356.1| hypothetical protein CLONEX_02841 [Clostridium nexile DSM 1787]
          Length = 657

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 149/442 (33%), Gaps = 39/442 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           E+  D +   H  + R   +        +G+   +P G   +  +   I +E+ R G + 
Sbjct: 234 EHLEDIKKRDHNKLGREMELFTTVDVIGQGLPLLMPKGAAMVQTMQRWIEDEEERRGYMR 293

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSY 125
              P +   DL+V S  +  Y + M  L D     ++     P        +++   KSY
Sbjct: 294 TKTPLMAKKDLYVISDHWGHYKEGMFVLGDEEKEGEEVFALRPMTCPFQYYVYKQSQKSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +    FR+E      G+ R R+F + + +   + P+  +  +          
Sbjct: 354 RDLPCRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLV-IRPDQVEDEFKGCVDLAKYC 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG++       S             LAD      +     M   +        D + 
Sbjct: 413 LTTLGVEEDVTYRLS-------------LADPDNMDKYLGTREMWDEVEDVMRKMLDHLE 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +N    + T   A      + +  +   +   +    +++    +   ++      TF  
Sbjct: 460 IN--YTEETGEAAFYGPKLDIQAKNVYGKEDTMITIQLDM----FLAERF----DMTFVD 509

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG K     +    +G      A +   + G    W   + P ++ ++ I    +   D
Sbjct: 510 KDGEKKRPYIIHRTAMGCYERTLAWLIEKYAGLFPTW---LCPEQVRVLPI---SEKYHD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G     D+  E+IG +     L   P  ++VG+K   +  V ++ R  
Sbjct: 564 YANKVANELRGNGVKCTVDERAEKIGYKIRETRLDRVPYMLVVGAKEEEEGVVSVRSRYL 623

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      L+  IN         
Sbjct: 624 GDEGQKPLDTFINDICKEIRTK 645


>gi|206968558|ref|ZP_03229514.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206737478|gb|EDZ54625.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 476

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 152/448 (33%), Gaps = 77/448 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +  +          KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYSSI----------KGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             TG   + +P      L   E    + +  E+  +    D+ +       PT E +  +
Sbjct: 61  KETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCVRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E         +R FL      F      + H   +
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWEKT-------TRPFLRTTE--FLWQEGHTIHETAE 171

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +       L + ++ +                          FC        I  + 
Sbjct: 172 ESQA-----ETLNILNLYVS-------------------------FCEDYLAIPVIKGQK 201

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T+ +      +     +                          + ++ G    FGT +S 
Sbjct: 202 TEKEKFAGAKATYTIESL---------------------MHDGKALQTGTSHNFGTNFSE 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  
Sbjct: 241 AFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQ 299

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           H +       ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V
Sbjct: 300 HKEGVLAKATELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  R T  +E + ++++          
Sbjct: 359 VLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|73981323|ref|XP_860781.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 5
           [Canis familiaris]
          Length = 636

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 137/411 (33%), Gaps = 56/411 (13%)

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----------------AD 98
            ++  E  R G  E+  PTL SA LW  SG ++ Y ++M  L                  
Sbjct: 255 KLLTAEYTRRGFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTS 314

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLM 157
            +   +   P +      +F    +S+R LP       +  R E      G+ R R F  
Sbjct: 315 HSTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQ 374

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            DA+ F   P+  +            ++  LG     +   + P G              
Sbjct: 375 DDAHIFCA-PDQLEEEIQGCLDFLRSVYAVLGFSFR-LALSTRPSG-------------- 418

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                      D          ++      +     A Y    DVH   L D+L    + 
Sbjct: 419 ---FLGESCLWDQAEQVLQRALEEFGEPWDLKPGDGAFYGPKIDVH---LHDALGRPHQC 472

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
               ++    F    ++       +KG  G  +  V +    +G++  +  V+  S+ GK
Sbjct: 473 GTIQLD----FQLPLRF----DLQYKGQAGVLERPVLIHRAVLGSVERMLGVLAESYGGK 524

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVA 395
              WP  ++PF++ +I + A  +   +   +   RL   G     D D G  +  +   A
Sbjct: 525 ---WPLWLSPFQVVVIPVGAEQE---EYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRA 578

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            L  +  Q +VG K  S   V I+ R      +  L E +        N R
Sbjct: 579 QLAHYNFQFVVGQKEQSKKTVNIRTRDNRQLGERDLTEAVQRLLE-LQNTR 628


>gi|57640485|ref|YP_182963.1| prolyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|74503571|sp|Q5JF49|SYP_PYRKO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57158809|dbj|BAD84739.1| prolyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 481

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 152/448 (33%), Gaps = 76/448 (16%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+ F     E    A I                KG+  WLP G K + N+   I  E 
Sbjct: 7   KWSENFSEWYNELIETAGIQDK---------RYPVKGMNVWLPYGLKIMRNIERFIHAEM 57

Query: 62  NRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTD 116
            RTG  E+  P L    +   E+     +  E+  +        D  +I  PT E  M  
Sbjct: 58  ERTGHDEVLFPALIPETEFQKEAEHIKGFEGEVYWVTHAGLEPLDVRLILRPTSETAMYS 117

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +F   I+S+ +LPF  YQI   +R E +    ++R RE               +  SY  
Sbjct: 118 MFSLWIRSHADLPFKIYQIVNVYRYETKHTRPLIRVREISR------FFEAHTAHDSYE- 170

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +  +I   L +                   F  LA         SK       P   
Sbjct: 171 --DAERQIKEDLEI-------------------FDNLARFLALPYIISKRPEWDKFPGAY 209

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                                               E      R +++G +  +   ++ 
Sbjct: 210 YSLGA-------------------------------EVMMPDGRTLQIGTMHNYRQNFAK 238

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +  ++   G   YV   ++G+ + R++AAVI    D +G++ P ++AP ++ ++ I  
Sbjct: 239 AYNIQYETETGDHEYVHQTTFGM-SERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPK 297

Query: 357 HDQVCR--DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            D          +I   L   G  V  D+   + G ++   +L G PL++ VG + V   
Sbjct: 298 KDSEADVFAYAREIAEELRTAGIRVHVDERDIRPGRKYYDWELKGVPLRIEVGPRDVEGK 357

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
           K  +  R T  +  +  + ++       
Sbjct: 358 KAVLARRDTLEKITVERDNIVEEVRKTL 385


>gi|114559281|ref|XP_001168852.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 5 [Pan
           troglodytes]
 gi|10434068|dbj|BAB14117.1| unnamed protein product [Homo sapiens]
 gi|55958997|emb|CAI15489.1| threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119573934|gb|EAW53549.1| threonyl-tRNA synthetase-like 1, isoform CRA_b [Homo sapiens]
          Length = 588

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 138/416 (33%), Gaps = 56/416 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------- 96
            D +  + + E    G  E+  PTL S  LW +SG ++ Y ++M  +             
Sbjct: 202 RDQLRQLFKAEYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQS 261

Query: 97  --ADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
             + R+        P +      +F    +S+R LP          R E      G+ R 
Sbjct: 262 DDSTRHITDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRL 321

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F  T +  +            ++  LG     +   + P G         
Sbjct: 322 RCFQQDDAHIFCTT-DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPC 376

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D  E  +  +      P                  +  +   A      +  L D+L 
Sbjct: 377 LWDQAEQVLKQALKEFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALG 419

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIES 331
              +     ++    F    ++       +KG  G  +  V +    +G++  +  V+  
Sbjct: 420 RPHQCGTIQLD----FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAE 471

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGS 390
           S  GK   WP  ++PF++ +I + +  +   +  ++    L   G     D D G  +  
Sbjct: 472 SCGGK---WPLWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSR 525

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   A L  +  Q +VG K  S   V I+ R      +  L E +        N R
Sbjct: 526 RIRRAQLAHYNFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 580


>gi|54023348|ref|YP_117590.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|54014856|dbj|BAD56226.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 419

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 142/442 (32%), Gaps = 44/442 (9%)

Query: 17  DAEIA--SHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           DA      H+ + R   +         G+  WLP G      +   IR  ++R G   + 
Sbjct: 13  DARRPMYDHRKLGRELDLFDTDPLIGSGLPYWLPSGGALRHALEEYIRTAEHRAGYRHVH 72

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P L   +L+  SG +  Y ++M    D   + ++  P+       I+RS   SYR LP 
Sbjct: 73  SPVLGKRELYEISGHWAHYREDMYPPMDVGGEQVVLRPSLCPHHALIYRSRSHSYRELPL 132

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              ++   +R EL     G+ R R   + DA+ F  T +      +       R    LG
Sbjct: 133 RIAELGAMYRAELSGVLGGLSRVRAIHLNDAHIF-CTEDQVGAEVHAALAMIARAHAALG 191

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +     R      GG                 +     M         +      ++   
Sbjct: 192 IAPHRFRLSLPGPGG----------------KYVPNPAMWERATGVLVEALRAAGID--Y 233

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
           E      A      + +  DS      +S   ++                  + GADG K
Sbjct: 234 EPADDEAAFYGPKIDVQFLDSAGREFTLSTVQVDFHQPEQ--------FDLCYIGADGAK 285

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    IG++    A +   H G   +W   +AP ++ ++ +         A E +
Sbjct: 286 HRPVMVHRSIIGSVERAVAHLVEVHGGAFPVW---LAPTQVVVLPLAG---EQHAAAEDV 339

Query: 369 YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L             +  +G++         P QV+VG K V+   + ++ R      
Sbjct: 340 VRVLRAADVRAELAGHDQGSLGARIRAG--RQVPYQVVVGPKEVAAGTLAVRLRSGEQLA 397

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
            + + + +         +   L
Sbjct: 398 PLPVSDFLARVDRVVRAHAAEL 419


>gi|321460980|gb|EFX72016.1| hypothetical protein DAPPUDRAFT_227683 [Daphnia pulex]
          Length = 1566

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 150/455 (32%), Gaps = 78/455 (17%)

Query: 13   ENPRD---AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            E  +D   AE  S +++ +  MI  +   G Y   P      +++      E  + G   
Sbjct: 1070 EAKKDENLAEWYS-QVITKAEMIEYYDVSGCYILRPWAYAIWESIKDFFDAEIKKLGVQN 1128

Query: 69   MSVPTLQSA-DLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIK 123
               P   S   L  E      +  E+  +    +    + +   PT E VM   +   I+
Sbjct: 1129 CYFPMFVSHHALEKEKTHIADFAPEVAWVTKSGNSDLAEPIAIRPTSETVMYPAYAKWIQ 1188

Query: 124  SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            S+R+LP    Q     R E +     +R+REFL ++ ++   T + ++            
Sbjct: 1189 SHRDLPLKLNQWNNVVRWEFKHPQPFLRTREFLWQEGHTAFATAKEAEEE---------- 1238

Query: 184  IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +F  L L    +  +   I                             I    T+ +   
Sbjct: 1239 VFQILEL-YSQVYTDLMAI---------------------------PVIKGRKTEKEKFA 1270

Query: 244  SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +          A                    S RGI+     + G  +S       +
Sbjct: 1271 GGDFTTTVEAFIAA--------------------SGRGIQGATSHHLGQNFSKMFEIVIE 1310

Query: 304  GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHD 358
              + K+  ++   S+G+   R +  ++    D KG++ P +VA  ++ ++     +   +
Sbjct: 1311 DPETKEKKHIYQNSWGLT-TRTIGVMVMVHSDDKGLVLPPNVASIQVVIVPCGINVNVSE 1369

Query: 359  QV---CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +       AC++    LS  G  V  D       G +F   +L G PL+V +G + V   
Sbjct: 1370 EEKNNLMTACQEYEKVLSAAGIRVKGDYRDNYSPGWKFNHWELKGVPLRVEIGPRDVKQG 1429

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R T  +   S+        H     +  L
Sbjct: 1430 EYVAVRRDTSEKLTKSMASAAGDIKHLLDTIQKAL 1464


>gi|262341274|ref|YP_003284129.1| proline-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272611|gb|ACY40519.1| proline-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 488

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 165/448 (36%), Gaps = 86/448 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           +++++++G+      +G     P G    + +   + +    TG   +  P L    ++ 
Sbjct: 16  NEIVVKSGLAEFSGVRGFMIVKPYGYSLWEKMKQELDKMLKNTGHKNVYFPLLIPKSVFS 75

Query: 81  ---------------VESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
                          V   R     +E++     R  + ++  PT E ++   ++  I+S
Sbjct: 76  KEKEHTEIFSEGCAVVTHSRLKKNKEELIIDPESRLQEELVIRPTSESIIWKTYKRWIQS 135

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E+R R   +R+ EFL ++ ++   T + +    NK+    L I
Sbjct: 136 YRDLPVLLNQWGNALRWEMRTRL-FLRTTEFLWQEGHTAHSTKKEAIEEANKI----LNI 190

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +                                                  + +F  I  
Sbjct: 191 YTDF-----------------------------------------------SENFMAIPV 203

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L  I       Y +      E L            + +++G   + G  +S      F  
Sbjct: 204 LQGIKPHMDKFYGSEKTYCIEAL--------MQDGKALQIGTSHFLGQNFSKAFDVQFTN 255

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---C 361
            +GK  YV   S+G+ + R++  +I S  D KG+I P  +AP +I +I I  + +     
Sbjct: 256 YNGKKEYVWSTSWGV-STRLIGGLIMSHSDDKGLILPPKIAPIQIVIIPIYKNKEKFGII 314

Query: 362 RDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            D  EKI   L +    V +D+      G +F   ++ G PL++ +GS  + + KVEI  
Sbjct: 315 NDVVEKILNVLEQERIRVKYDNRVTFTPGWKFHEYEMKGVPLRISIGSNEIKNEKVEIFR 374

Query: 421 RLTGIREDMS---LEEVINYASHRFSNN 445
           R T  +  +S   L+ +I         N
Sbjct: 375 RDTYEKIYISWINLKNLIPKLLDDIQKN 402


>gi|222874274|gb|EEF11405.1| predicted protein [Populus trichocarpa]
          Length = 191

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/191 (51%), Positives = 138/191 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A++W E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEMWEETGRFEKMGPELLRIKDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDTAQISYQTMRAA 180

Query: 181 YLRIFHRLGLK 191
           Y RIF R GL+
Sbjct: 181 YKRIFDRFGLQ 191


>gi|194334392|ref|YP_002016252.1| prolyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|259511613|sp|B4S9D5|SYP_PROA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194312210|gb|ACF46605.1| prolyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 481

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 161/454 (35%), Gaps = 83/454 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +    +I           P G    + + A +      
Sbjct: 13  SQWYIDLV----RSAKLADYSDVRGCMIIR----------PNGYAIWEKMQAALDAMFKA 58

Query: 64  TGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPLFIPESFIKKEAEHIEGFAPECAVVTHGGGEQLAENLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T   ++    +M 
Sbjct: 119 KKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATSTEAQEEVMRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++     + +   A    +G              E++ F                
Sbjct: 178 ----NVYKTFAEEYM---ALPVIMGR-----------KTESEKFAGAVETW--------- 210

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                             E      + ++ G     G  ++   
Sbjct: 211 --------------------------------CIEAMMQDKKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  +G   YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I I   D
Sbjct: 239 DCRFQSKEGALEYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLATRQVVIIPILKGD 297

Query: 359 -QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +    I A L++ G   F DD  +   G +FA  +L G P+++ +G + +  S  
Sbjct: 298 ISAVIEKARSIAAELNQKGIAAFVDDSDQNSPGWKFAEYELQGIPVRLELGPRDIQSSTC 357

Query: 417 EIKHRLTGIREDMSLE-EVINYASHRFSNNRPVL 449
               R TG +  + L+  + +  +    + +  L
Sbjct: 358 IAARRDTGEKSKLQLDSSLADQINSLLESIQTNL 391


>gi|15669423|ref|NP_248233.1| prolyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2501043|sp|Q58635|SYP_METJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1591870|gb|AAB99242.1| prolyl-tRNA synthetase (proS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 455

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 167/452 (36%), Gaps = 83/452 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+++  IL++    AEI           +    KG   +LP G K       IIR  
Sbjct: 1   MEFSEWYSDILEK----AEIYD---------VRYPIKGCGVYLPYGFKIRRYTFEIIRNL 47

Query: 61  QNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMT 115
            + +G  E   P L   DL   E+     +  E+  +        D  +   PT E  + 
Sbjct: 48  LDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIY 107

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSY 174
            + +  +K + +LP   YQI   FR E +    ++R RE    K+A++   T E +++  
Sbjct: 108 YMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQV 167

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +    Y + F  LG+  +       P                         +  FP   
Sbjct: 168 KEAISIYKKFFDTLGIPYLI---SKRPE------------------------WDKFPGAE 200

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
               FD I      ++  T                      +  ++  E+  IF   T  
Sbjct: 201 YTMAFDTIFPDGRTMQIATVH-----------------NLGQNFSKTFEI--IFETPT-- 239

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                       G   Y     YGI + RV+A++I    D KG+I P  VAP ++ ++ +
Sbjct: 240 ------------GDKDYAYQTCYGI-SDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPL 286

Query: 355 --KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             K  + +  +  ++IY +L      V  DD   + G +F   ++ G PL++ VG K + 
Sbjct: 287 IFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIE 345

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + K+ +  R T  +  +   +++       +N
Sbjct: 346 NKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 377


>gi|225016294|ref|ZP_03705486.1| hypothetical protein CLOSTMETH_00197 [Clostridium methylpentosum
           DSM 5476]
 gi|224950969|gb|EEG32178.1| hypothetical protein CLOSTMETH_00197 [Clostridium methylpentosum
           DSM 5476]
          Length = 574

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/228 (40%), Positives = 129/228 (56%), Gaps = 1/228 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P DA I SH  ML+ G I Q   GIYS L   ++ ++ +  IIREE
Sbjct: 8   MLLSKLLGERYKEKPADASIPSHIFMLKGGYIRQVGNGIYSMLMPTKRIVNKIENIIREE 67

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+  P +   +LW ESGRY+S G E++R  DR+    + G THEE    + R+
Sbjct: 68  MDAIDGQEVLFPVVLPRELWDESGRYESVGSELVRFHDRSGGDYVLGMTHEEAAVHLARN 127

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY   PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E  +  Y+    +
Sbjct: 128 EAQSYAKYPFMIYQIQTKFRDEPRSRGGLIRVREFTMKDAYSFHTSQEDLERYYDICHKA 187

Query: 181 YLRIFHRLGLKSIP-MRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R+GL  +  + ++SG +GG ++HEF++L D GE  +      
Sbjct: 188 YERIFERVGLPEVISVGSDSGMMGGAVAHEFMLLCDAGEDTIVTCDSC 235



 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 1/182 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E              RG+EVG+IF  GTKY+  M   +   DGK     MG YGIG  R+
Sbjct: 394 EGAKCCNCGAPLKLNRGVEVGNIFQLGTKYTESMQMVYTDQDGKQQTPIMGCYGIGVGRL 453

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            A +IES HD  G IWP +VAP++I +  +       +    ++Y +LSK   +V  DD 
Sbjct: 454 AACIIESHHDDYGPIWPYAVAPWQIHICALSNKKMDVQPIARELYDKLSK-NYEVILDDR 512

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G   G QFA ADLLG P++++V  K + + +VEI  R   I+  + LE++    +   + 
Sbjct: 513 GANAGVQFADADLLGVPIRIVVSVKNIENGEVEISTRDKSIQTKVKLEDIEAEIAKIVAQ 572

Query: 445 NR 446
            +
Sbjct: 573 IQ 574


>gi|220927802|ref|YP_002504711.1| prolyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|259511589|sp|B8I5R4|SYP_CLOCE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219998130|gb|ACL74731.1| prolyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 478

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 154/449 (34%), Gaps = 79/449 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + AE+  +             +G     P G    +N+   +      TG 
Sbjct: 18  FGQWYTDVIKKAELVDYS----------SVRGCMVIKPYGYAIWENIQKSLDTRFKETGH 67

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSH 121
             + +P      L   E    + +  E+  +    D+ +       PT E +  + + + 
Sbjct: 68  ENVYMPMFIPESLLLKEKEHVEGFAPEVAWVTHGGDEKLTERLCVRPTSETLFCEHYSNS 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP  + Q     R E +     +R+ EFL ++ ++   T E ++    +M   Y
Sbjct: 128 IQSYRDLPKLYNQWCSVVRWE-KTTRPFLRTLEFLWQEGHTAHATAEEAQEETIRMLNVY 186

Query: 182 LRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +    L +  I  R                     E + F                  
Sbjct: 187 ADVLENVLAIPVIKGR-------------------KTEKEKFAGAH-------------- 213

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              +              +   HN     +   + + + +  ++ ++             
Sbjct: 214 --ATYTVESLMHDGKALQSGTSHNFGDGFAKAFDIQYTDKNNQLQYVHQ----------- 260

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                          S+G+   R++ A+I    D  G++ P ++AP ++ +I +  H + 
Sbjct: 261 --------------TSWGV-TTRLIGAIIMVHGDDSGLVLPPAIAPTQLVIIPVSQHKEG 305

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   ++  +LS     V  DD  +  G +F+  ++ G PL++ +G K +  ++  +  
Sbjct: 306 VLEKANELKQKLS-AKFRVKMDDSDKMPGWKFSEYEMKGVPLRIEIGPKDIEKNQAVLVR 364

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R    +  +SL+ +     +  ++ +  L
Sbjct: 365 RDNREKIFVSLDNLEETVVNTLADVQKSL 393


>gi|58264302|ref|XP_569307.1| proline-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57223957|gb|AAW42000.1| proline-tRNA ligase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 740

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 146/436 (33%), Gaps = 75/436 (17%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVES 83
           +L+  M+  +   G Y   P        +     +E  + G  +   P  + SA L  E 
Sbjct: 254 LLKGQMLDYYDISGCYILRPWSYSIWQIIQNWFDDEIKKLGVQDCYFPMFVSSARLEKEK 313

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        D+ +   PT E VM   +   I S+R+LP    Q     
Sbjct: 314 DHIEGFAPEVAWVTKAGSSDLDEHIAIRPTSETVMYPYYAKWINSHRDLPLKLNQWNSVV 373

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  L    +             +   L L    +  + 
Sbjct: 374 RWEFKNPQPFLRTREFLWQEGHTAFLDKADADKE----------VLDILDL-YRKVYEDI 422

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +                             IP + ++ +     +             
Sbjct: 423 LAV---------------------------PVIPGKKSEKEKFAGGDYTTTVEGFIPT-- 453

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK--DHYVQMGSY 317
                             + RGI+     + G  +S     T +  D      Y    S+
Sbjct: 454 ------------------TGRGIQAATSHHLGQNFSKMFDITVESPDKSQGRLYAYQNSW 495

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACEKIYARL 372
           G+ + R +  ++    D +G++ P  VA  +++++ +        +Q   DAC K+   L
Sbjct: 496 GL-STRSLGVMVMVHGDDQGLVLPPRVALQQVAIVPVGLSKGEGKNQPIYDACLKLEREL 554

Query: 373 SKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMS 430
              G     D       G +F   ++ G PL++ +G + ++++  + ++      +  M 
Sbjct: 555 VAAGIRAKADLRDGYTPGWKFNDWEMRGVPLRLELGPRDIANNSTLSVRRYDN-HKTPMP 613

Query: 431 LEEVINYASHRFSNNR 446
           L ++ N       + +
Sbjct: 614 LSDIANTVRTYLDDIQ 629


>gi|319759028|gb|ADV70970.1| prolyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 615

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 93/208 (44%), Positives = 130/208 (62%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE ++  AI
Sbjct: 3   IPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREEFDKIDAI 62

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R  ++SY+ 
Sbjct: 63  EFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARDAVQSYKQ 122

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +Y  IF R
Sbjct: 123 LPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAAYEAIFTR 182

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            GL+   +  + G +GG  S EF+ +  
Sbjct: 183 AGLEFKAIIGDGGAMGGKDSQEFMAITP 210



 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 14/183 (7%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+
Sbjct: 427 PDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVL 486

Query: 330 ESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           E                   GI +P  +APF + LI +   D+   +  + I A L   G
Sbjct: 487 EQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAG 546

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K + TG   ++ +++++ 
Sbjct: 547 YEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLLE 605

Query: 437 YAS 439
              
Sbjct: 606 TLQ 608


>gi|868027|gb|AAC43605.1| threonyl-tRNA synthetase [Buchnera aphidicola]
 gi|1098080|prf||2115235B Thr-tRNA synthetase
          Length = 642

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/447 (15%), Positives = 136/447 (30%), Gaps = 71/447 (15%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVP 72
             RD        +L    + + S G+  W   G    + +   +RE+        E+  P
Sbjct: 239 KKRDHRKIGK--LLNLYHMQKESPGMIFWHNNGWIIFNELEIFVREKLKGIINYKEVKTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L    +W +SG +D+Y   +   +  N +     P +      IF   +KSYR+LP   
Sbjct: 297 LLIHKSIWQKSGHWDNYQDRIFTTSSEN-REYCIKPMNCPGHVQIFNCGLKSYRDLPIRM 355

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R+E      G+MR R F   DA+ F  T E  ++  N        ++     K
Sbjct: 356 AEFGSCHRNESSGSLHGLMRIRNFTQDDAHIF-CTQEQLRYEINNCIKMIYDLYSTFNFK 414

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            I ++  + P            A+   + V    +        E   +   I        
Sbjct: 415 KILVKFSTRPKKRIGDESVWDQAEKDLSDVLIENNLKFEHQEGEGAFYGPKIEF------ 468

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGA-DG 307
                                  +    R  + G I   FY   +    + + +    + 
Sbjct: 469 ---------------------VLQDSLDRNWQCGTIQLDFYLPIR----LRSFYIDEHNH 503

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   + +    +G++     ++           P  ++P ++ +++I        +  +K
Sbjct: 504 QKIPIIIHRAILGSIERFIGILIEEFQE----IPTWLSPIQVVILSIT---DSHINYVKK 556

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFA------------VADLLGFPLQVIVGSKFVSDSK 415
           I    S +   V  D   E+IG +              +       L            K
Sbjct: 557 IVQHFSDINIRVESDLRNEKIGFKIRATYIASNSIYINLWRKEKLNL-----------KK 605

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           + ++ R       + ++  I       
Sbjct: 606 ISVRTRNGYNLGIIDIDCFIKKLQKEI 632


>gi|269127985|ref|YP_003301355.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268312943|gb|ACY99317.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 565

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 7/231 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P L+++P DAE A H+L++R G I + + G YS LP   +    +  +IR+E
Sbjct: 1   MRWSRFYAPTLRQDPADAETAGHRLLVRAGFIRRLAAGHYSLLPPAARVRSKIIEVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A+LW  +GR+D+ G+E  RL DR       G THEEV+  +  +
Sbjct: 61  MDRIGAQEVLLPALQPAELWRRNGRWDASGEETFRLTDRKGAEAALGTTHEEVVASL-AT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP  +YQ Q  FRDE RPR G++  REF +KDAYS D      + S+     +
Sbjct: 120 ELGSYRRLPQLWYQFQTAFRDEARPRSGLLGLREFTLKDAYSLDADEAALEGSFQAHREA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF RLGL  I  +      G   S EF+  ++ G+  V          
Sbjct: 180 YRRIFQRLGLPVIEAQ------GPGGSLEFLCPSEAGDDAVVRCPACGYAA 224



 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 1/211 (0%)

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
             NTD   +  ++   +     +A        +   S  +    +   IEV H+   G +
Sbjct: 356 GANTDGVHVRGVDIARDIAVTAWADLRRARAGEPCPSCGQA-LETTPAIEVAHLRKPGRR 414

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
            +  + A   G DG +    MG Y IG  R +AA+ E+ HD  G+ WP  +APF +++  
Sbjct: 415 CTEALGARVLGPDGTEITPLMGRYSIGVERAIAAIAETGHDDSGLRWPAGIAPFDVAVTL 474

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +   D     A E+IY  L+  G +   DD  E+ G++FA  +L+G P +V VG + +  
Sbjct: 475 LDPRDDQVTAAAEQIYTALAAAGVETILDDRDERPGAKFADTELIGIPYRVTVGKRGLKS 534

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             VEIK R TG  + + + E     +    +
Sbjct: 535 GTVEIKTRATGRTDTVPIPEAAARVTALLKS 565


>gi|284031321|ref|YP_003381252.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810614|gb|ADB32453.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 417

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 147/410 (35%), Gaps = 41/410 (10%)

Query: 22  SHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R  G+         G+   LP G      + + + E + R+G   +  P L   
Sbjct: 3   DHRKLGRELGLFDSDPLIGAGLPYLLPAGAAIRQALESYVAELERRSGYQHVYSPVLGKR 62

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +L+  SG +  Y  +M       ++ ++  P+       I+RS   SYR LP  + ++  
Sbjct: 63  ELYELSGHWSHYSDDMYPPMKVGEEEVVLRPSLCPHHALIYRSRAHSYRELPVRYAELGG 122

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            +R EL     G+ R R   + D + F  T +             LR +  LGL+     
Sbjct: 123 MYRSELSGVLGGLTRVRAIQLNDGHIF-CTLDQVADEARAALDLILRAYGDLGLRPARFL 181

Query: 197 AE---SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                +    GD + +++  A++ +      ++ +D                    E+  
Sbjct: 182 LSLPAADARIGDPASKYVGDAESWDRSAALLREVLDEA--------------GVQYEEAP 227

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
              A      + ++ D+      +S   I+                  + GADG  H   
Sbjct: 228 GEAAFYGPKIDVQIADAAGRESTLSTIQIDFHQPAR--------FELDYIGADGNKHRPV 279

Query: 314 M-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           M     IG++  V A +   H G     P  +AP ++ ++ I   ++       +I  R 
Sbjct: 280 MVHRAIIGSLERVIAQLIELHGGA---LPGWLAPVQLVVLPISDAEEK---YAAEITRRA 333

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              G         E  +G++     L   P Q ++G++ +   ++ ++ R
Sbjct: 334 VDRGLRAELAHADEGTLGARIRENRL--VPYQAVIGARELEAGQLAVRDR 381


>gi|330833575|ref|YP_004402400.1| prolyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329307798|gb|AEB82214.1| prolyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 615

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 93/208 (44%), Positives = 130/208 (62%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE ++  AI
Sbjct: 3   IPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREEFDKIDAI 62

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R  ++SY+ 
Sbjct: 63  EFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARDAVQSYKQ 122

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +Y  IF R
Sbjct: 123 LPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAAYEAIFTR 182

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            GL+   +  + G +GG  S EF+ +  
Sbjct: 183 AGLEFKAIIGDGGAMGGKDSQEFMAITP 210



 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 14/183 (7%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    ARGIE+GHIF  GT+YS  M+A     +G+   + MG YGIG  R+++AV+
Sbjct: 427 PDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVL 486

Query: 330 ESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           E                   GI +P  +APF + LI +   D+   +  + I A L   G
Sbjct: 487 EQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAG 546

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K + TG   ++ +++++ 
Sbjct: 547 YEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLLE 605

Query: 437 YAS 439
              
Sbjct: 606 TLQ 608


>gi|134107660|ref|XP_777441.1| hypothetical protein CNBB0150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260133|gb|EAL22794.1| hypothetical protein CNBB0150 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 740

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 146/436 (33%), Gaps = 75/436 (17%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVES 83
           +L+  M+  +   G Y   P        +     +E  + G  +   P  + SA L  E 
Sbjct: 254 LLKGQMLDYYDISGCYILRPWSYSIWQIIQNWFDDEIKKLGVQDCYFPMFVSSARLEKEK 313

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        D+ +   PT E VM   +   I S+R+LP    Q     
Sbjct: 314 DHIEGFAPEVAWVTKAGSSDLDEHIAIRPTSETVMYPYYAKWINSHRDLPLKLNQWNSVV 373

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  L    +             +   L L    +  + 
Sbjct: 374 RWEFKNPQPFLRTREFLWQEGHTAFLDKADADKE----------VLDILDL-YRKVYEDI 422

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +                             IP + ++ +     +             
Sbjct: 423 LAV---------------------------PVIPGKKSEKEKFAGGDYTTTVEGFIPT-- 453

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK--DHYVQMGSY 317
                             + RGI+     + G  +S     T +  D      Y    S+
Sbjct: 454 ------------------TGRGIQAATSHHLGQNFSKMFDITVESPDKSQGRLYAYQNSW 495

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACEKIYARL 372
           G+ + R +  ++    D +G++ P  VA  +++++ +        +Q   DAC K+   L
Sbjct: 496 GL-STRSLGVMVMVHGDDQGLVLPPRVALQQVAIVPVGLSKGEGKNQPIYDACLKLEREL 554

Query: 373 SKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMS 430
              G     D       G +F   ++ G PL++ +G + ++++  + ++      +  M 
Sbjct: 555 VAAGIRAKADLRDGYTPGWKFNDWEMRGVPLRLELGPRDIANNSTLSVRRYDN-HKTPMP 613

Query: 431 LEEVINYASHRFSNNR 446
           L ++ N       + +
Sbjct: 614 LSDIANTVRTYLDDIQ 629


>gi|78187351|ref|YP_375394.1| prolyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|114152226|sp|Q3B2T0|SYP_PELLD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78167253|gb|ABB24351.1| prolyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 481

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 155/446 (34%), Gaps = 82/446 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +    +I           P G    + + A +      
Sbjct: 13  SQWYIDLV----RSAKLADYSDVRGCMVIR----------PNGYAIWEKMQAALDRMFKE 58

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVVTHGGGEELAEKLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TPE S+    +M 
Sbjct: 119 KKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATPEESQEEVMRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++     + + M      +G     E    A+                       
Sbjct: 178 ----NVYRTFAEEYMAMPV---IMGRKTDSEKFAGAEET--------------------- 209

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                             E      + ++ G     G  ++   
Sbjct: 210 -------------------------------YCIEAMMQDGKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  D +  YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I I   D
Sbjct: 239 DCQFQTKDSRLDYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLASRQVVIIPILRGD 297

Query: 359 -QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +  + + A L   G   F D   +   G +FA  +L G P+++ VG + +     
Sbjct: 298 KAAVLEQADAMAASLKAAGIPAFVDGSEQNSPGWKFAEYELQGIPVRIEVGPRDIEKGIC 357

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
               R T  + ++ L E +  A    
Sbjct: 358 IAARRDTLEKSELQLGETLPGAVQEI 383


>gi|226494879|ref|NP_001149927.1| prolyl-tRNA synthetase [Zea mays]
 gi|195635525|gb|ACG37231.1| prolyl-tRNA synthetase [Zea mays]
          Length = 537

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/462 (16%), Positives = 157/462 (33%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  F     +    AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 63  RSADFNAWYTDVIAAAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 112

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 113 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEXLVVRPTSETIVNHM 172

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+SYR+LP    Q     R E+R     +R+ EFL ++ ++   T E ++    + 
Sbjct: 173 FTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATLEEAEKEAMQ- 230

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + ++                                    F  +      IP   +
Sbjct: 231 ---MIDVYT----------------------------------KFAFEHAAIPVIPGRKS 253

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +     N                                 + ++ G     G  +S  
Sbjct: 254 RVETFAGANRTYTIEAM---------------------MGDKKALQAGTSHNLGQNFSRA 292

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F   +G+  +V   S+ I + R V  +I +  D  G++ P  +AP ++ ++ I   
Sbjct: 293 FGTQFMDENGQIEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPRIAPIQVIIVPIWKK 351

Query: 358 ---DQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
                V  +A + +   L + G  V  DD   +  G +F   ++ G P+++ +G + V++
Sbjct: 352 GDEKAVVVEAVDSVQKILKEAGIRVKVDDSELRTPGWKFNHYEMKGVPVRIEIGPRDVTN 411

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
             V +  R      G    +S+E   ++N+   R  + +  L
Sbjct: 412 KSVVVSRRDVPGKQGKEFGVSMEPSILVNHIKGRLDDIQASL 453


>gi|294632148|ref|ZP_06710708.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835481|gb|EFF93830.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 442

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 148/438 (33%), Gaps = 48/438 (10%)

Query: 22  SHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R   +         G+  WLP G      +   IR+ + R G   +  P L   
Sbjct: 37  DHRKLGRELDLFDTDPLLGAGLPYWLPDGATVRHTLEEYIRDAERRAGYRHVYSPVLGKR 96

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +L+  SG +D Y  +M    D   + ++  P+       I+RS   S+R LP    ++  
Sbjct: 97  ELYEISGHWDHYSDDMFPPMDLGGEQVVLRPSLCPHHAVIYRSRAHSHRELPLRMAELGG 156

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            +R EL     G+ R R   + DA+ F  T +              R +  LG+     R
Sbjct: 157 MYRSELSGVLGGLTRVRAIQLNDAHIF-CTLDQVAEEAGAALEMIRRAYEALGVTPARYR 215

Query: 197 AESGPIGGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                 GG      E    A    T+V                                 
Sbjct: 216 LSLPGPGGKYVAAPEKWRRATALLTEVLDRSGLPYEAAEG-------------------- 255

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A      + ++ DS      +S   ++                  + GADG  H   M
Sbjct: 256 EAAFYGPKIDVQVADSAGRESTLSTVQVDFHQPER--------FDLHYIGADGARHRPVM 307

Query: 315 -GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                IG++    A +  +H G    W   +AP ++ ++ + A +       E +  R +
Sbjct: 308 VHRSIIGSVERAVAHLVEAHGGAFPAW---LAPVQLVVLPVSAAE---LPQAEALARRCT 361

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +G        + G  +G++   + L   P Q ++G+K  +D  V ++ R          
Sbjct: 362 DLGLRAEIAAPERG-TLGARIRASRL--VPYQAVIGAKEATDDHVSLRLRDGRRLPPQPT 418

Query: 432 EEVINYASHRFSNNRPVL 449
            + +   +   +++ P L
Sbjct: 419 TDALTRINALTTSHNPEL 436


>gi|253565674|ref|ZP_04843129.1| prolyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|251945953|gb|EES86360.1| prolyl-tRNA synthetase [Bacteroides sp. 3_2_5]
          Length = 497

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 169/451 (37%), Gaps = 89/451 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  Q + +G     P G    + +   + +    TG +    P L        E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + +++ I+S
Sbjct: 82  AEHVEGFAKECAVVTHYRLKNAEDGSGVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYL 182
           YR+LP    Q    FR E       MR+R FL    + +    T   ++    +  +  L
Sbjct: 142 YRDLPILCNQWANVFRWE-------MRTRLFLRTAEFLWQEGHTAHATREEAEEEAIRML 194

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++                            A+  E         +   + S N  F   
Sbjct: 195 NVY----------------------------AEFAEK---YMAVPVVKGVKSANERFAGA 223

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +   +I                               + ++ G   + G  ++      F
Sbjct: 224 LDTYTIEAM------------------------MQDGKALQSGTSHFLGQNFAKAFDVQF 259

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +
Sbjct: 260 VNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLK 318

Query: 363 ---DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 E I A+L ++G  V +D+   ++ G +FA  +L G P+++++G + + ++ +E+
Sbjct: 319 LIDAKVEGIVAKLKQLGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEV 378

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             R T  +E ++ + +  Y  +     +  +
Sbjct: 379 MRRDTLEKETVTCDGIETYVQNLLEEIQANI 409


>gi|169621989|ref|XP_001804404.1| hypothetical protein SNOG_14207 [Phaeosphaeria nodorum SN15]
 gi|111057324|gb|EAT78444.1| hypothetical protein SNOG_14207 [Phaeosphaeria nodorum SN15]
          Length = 542

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 160/483 (33%), Gaps = 96/483 (19%)

Query: 2   RRSKYFLPILQENPRDAEI-----------ASHKLMLR---TGMIHQHSKGIYSWLPLGQ 47
           R+ ++ + +  E P DA++             H+ + +     +    S G    LP G 
Sbjct: 41  RQLQHTVTVSSEAPADAQLNPTTADPPTPPTDHRTLAQVHNLFITSPFSPGSPLILPNGA 100

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------- 99
                + + +R +  + G  E+  P +    LW +SG +++Y ++M  +  R        
Sbjct: 101 YVFQKLQSFLRAQYPQFGFQEVITPIIYKKSLWEKSGHWENYAEDMFSVQGRGATGQTEK 160

Query: 100 ----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                D+     P +      +FR  IKSYR+LP  +       R+E+     G+ R R 
Sbjct: 161 AQVGEDEEFGLKPMNCPGHCLLFRDEIKSYRDLPIRYADFSALHRNEVSGSLTGLTRVRR 220

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVL 213
           F   DA+ F   P+       +       +++  GL    +   + P      + E    
Sbjct: 221 FHQDDAHIF-CRPDQILPEIEQTLKFVGMVYNTFGLGPYKLLLSTRPKDSFIGTIEEWDR 279

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A+   +    S          +                     A      +  L DS  +
Sbjct: 280 AEKQLSTALDSIGSEWAINEGDG--------------------AFYGPKIDIILKDSNGK 319

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGK------------DHYVQMGSYGIG 320
             + +   ++    F    ++ L   A+ +    G                V +     G
Sbjct: 320 EHQTATIQLD----FQLPQRFDLQYQASPEELEAGTQTTMDTGLDPSLRRPVMIHRAIYG 375

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS------- 373
           ++    A++   + GK   W   ++P   +++++ + D   +   E++ A LS       
Sbjct: 376 SIERFMALLIEHYAGKYPFW---LSPRPATILSLNS-DANVQAHIERVKAVLSGLQPHDA 431

Query: 374 -----------------KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                             +  DV   D    +G + A A    +   ++VG K   +  V
Sbjct: 432 PSTASSSSPKPLPLSTIHLPIDVDISDR--SLGKKVAEARSKKYNHMIVVGGKEAENDAV 489

Query: 417 EIK 419
            +K
Sbjct: 490 NLK 492


>gi|88802133|ref|ZP_01117661.1| prolyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88782791|gb|EAR13968.1| prolyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 492

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 158/452 (34%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A +      TG      P      L+ 
Sbjct: 17  NELVVKADLAENSAVRGCMVIKPYGFAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFE 76

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ ++  PT E ++   ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLQNDPDNPGKLRVDPDAKLEEELVVRPTSEAIIWSTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R FL    +   L  EG            
Sbjct: 137 IQSYRDLPLLINQWANVVRWE-------MRTRLFLRTAEF---LWQEG------------ 174

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                           A T   +       M     +   DF  
Sbjct: 175 ------------------------------HTAHTTRAEAITEAQQMQDIYATFAEDFMA 204

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +  +            A   +  E L            + ++ G   + G  ++      
Sbjct: 205 MPVVKGAKSDSERFAGAEDTLTIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I +  D  G++ P  +AP ++ ++ I   +   
Sbjct: 257 FTSKEGKKEYVWATSWGV-STRLIGGLIMTHSDDSGLVLPPKLAPIQVVIVPIYKDETQL 315

Query: 362 RDACEKIY---ARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   +K+      L   G  V +DD    + G++FA  +L G P+++ +GS+ + +  VE
Sbjct: 316 QAISDKVAMFVKELRAKGASVKFDDRDTYRPGAKFAEYELKGVPVRIAIGSRDLENGTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  ++ ++ +EV+++        +  L
Sbjct: 376 VARRDTFEKQTVAQDEVVSFVLDLLEKIQQNL 407


>gi|66819305|ref|XP_643312.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60471379|gb|EAL69339.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 674

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/230 (40%), Positives = 138/230 (60%), Gaps = 1/230 (0%)

Query: 3   RSKYFLPILQENPRDAE-IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RS  F+P   +    ++ + S  LM + G+I + S G YS LPL QK ++N+  II EE 
Sbjct: 52  RSNLFIPFQNDQKIGSDMLESQLLMQKGGLIRRLSAGTYSTLPLAQKVMENIIKIIDEEM 111

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  +MS+P +   +LW ++GR+DS G ++++L DR  +     PTHEEV+T I  + 
Sbjct: 112 EKVGGQKMSMPKMLPRELWEKTGRWDSAGDDLIKLKDRKGEEYCLAPTHEEVITTIVANE 171

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             S  + P   YQI  K+RDE+RPRFG++R REF MKD YSFD + E ++ +Y ++  +Y
Sbjct: 172 SLSNSSFPIKLYQIGEKYRDEVRPRFGLLRGREFTMKDMYSFDTSKEAAEITYYQVKQAY 231

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             I  RL L    + A+SG IGG++SHEF VLA+ GE  +   K+     
Sbjct: 232 HNILERLELPYACVEADSGNIGGNMSHEFQVLANVGEDSLIYCKNCNYHA 281



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 91/184 (49%), Gaps = 19/184 (10%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             + RGIEVGHIFY GTKYS  + A + GA  +   ++MG +GIG  R++A ++E+    
Sbjct: 494 LDTKRGIEVGHIFYLGTKYSSKLGAYYTGAAQQRIPLEMGCFGIGVSRLLATIVETFSKE 553

Query: 336 K-GIIWPDSVAPFKISLIN--IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
           + G IWP  VAP++I ++   +K+   +     E++   +  +   +  +D  +     +
Sbjct: 554 ETGFIWPQQVAPYQIIIVPKHLKSQLSLAESVSEQLQTEIPYLKSRIIIEDRSKAHFAQK 613

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---REDMSLE---------EVINYAS 439
              +  +G P  +++     ++  +E+    T +   + +   E         ++INY  
Sbjct: 614 VLESKFMGIPYFLVI---DNNNKSIELGESSTKVNSFKIEYKSETPTLIQNQFDLINYFK 670

Query: 440 HRFS 443
           ++F+
Sbjct: 671 NKFN 674


>gi|269860011|ref|XP_002649729.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|263511674|sp|B7XIA1|SYTC_ENTBH RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220066924|gb|EED44394.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 634

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 153/454 (33%), Gaps = 51/454 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L   +E  + A+   H+ + +       H++S G   WLP G    + +   +R+E 
Sbjct: 221 KTLLKEYEEKVQKAKEMDHRKIGKELNLYFFHEYSPGSCFWLPDGVVIYNRLMEFLRKEY 280

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P +   DLW ESG Y +Y + +  ++    +     P +      IF+S 
Sbjct: 281 IKRGFKEVITPNIFHIDLWKESGHYQNYKENIYGIS---GEDFALKPMNCPGHCIIFKSV 337

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY+ LP  +    +  R+E      G+ R R F   DA+ F  +    K         
Sbjct: 338 ERSYKELPLRYADFGVLHRNECSGSLTGLTRVRRFQQDDAHIF-TSKSSIKEEIENAIGF 396

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++     K   +   + P     + E   +A+                   +   + 
Sbjct: 397 LKTVYSIFNFKY-ELFLSTRPTKFLGTIEEWDVAEKSLKDAIIDSGHTYTLNEGDGAFYG 455

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLP 297
             I +                               +  R I+   I   F    ++   
Sbjct: 456 PKIDI---------------------------ILHDILNRKIQCATIQLDFQLPQRF--- 485

Query: 298 MSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               FK   G  +  V +    +G+     A++  S+      W   + P ++ L+ I  
Sbjct: 486 -DLKFKNELGMYETPVIIHRAILGSFERFIAILIESYGKHLPFW---LHPRQVGLVTIDC 541

Query: 357 HDQVCRDACEK-IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +      EK +   +  +G    + D  + +  +   A L G  +  I+G K +  ++
Sbjct: 542 KHENYMYTVEKSMLNVVLDLGIR-KYTDPKDTLNKKIRKATLDGCKIICILGDKEMEKNE 600

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V +  R+        +EE++          +  +
Sbjct: 601 VNV--RIGNKTRTYKIEELLEKIKVSIETKKEFI 632


>gi|53713725|ref|YP_099717.1| prolyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60681995|ref|YP_212139.1| prolyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|265764051|ref|ZP_06092619.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|81314941|sp|Q5LCF0|SYP_BACFN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81382377|sp|Q64TJ6|SYP_BACFR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52216590|dbj|BAD49183.1| prolyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60493429|emb|CAH08215.1| prolyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|263256659|gb|EEZ28005.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301163433|emb|CBW22984.1| prolyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 497

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 169/451 (37%), Gaps = 89/451 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  Q + +G     P G    + +   + +    TG +    P L        E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + +++ I+S
Sbjct: 82  AEHVEGFAKECAVVTHYRLKNAEDGSGVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYL 182
           YR+LP    Q    FR E       MR+R FL    + +    T   ++    +  +  L
Sbjct: 142 YRDLPILCNQWANVFRWE-------MRTRLFLRTAEFLWQEGHTAHATREEAEEEAIRML 194

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++                            A+  E         +   + S N  F   
Sbjct: 195 NVY----------------------------AEFAEK---YMAVPVVKGVKSANERFAGA 223

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +   +I                               + ++ G   + G  ++      F
Sbjct: 224 LDTYTIEAM------------------------MQDGKALQSGTSHFLGQNFAKAFDVQF 259

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +
Sbjct: 260 VNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLK 318

Query: 363 ---DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 E I ARL ++G  V +D+   ++ G +FA  +L G P+++++G + + ++ +E+
Sbjct: 319 LIDAKVEGIVARLKQLGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEV 378

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             R T  +E ++ + +  Y  +     +  +
Sbjct: 379 MRRDTLEKETVTCDGIETYVQNLLEEIQANI 409


>gi|156937156|ref|YP_001434952.1| prolyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|172044461|sp|A8A9E3|SYP_IGNH4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156566140|gb|ABU81545.1| prolyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 478

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 146/421 (34%), Gaps = 70/421 (16%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDS 88
                  KG+  W P G K    V  IIR+  + TG  E+  P L    L   ES     
Sbjct: 24  DYGRYPVKGMGVWPPFGFKLRKLVLNIIRDLLDSTGHEEVLFPVLIPKTLLEKESEHIRG 83

Query: 89  YGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +     +  D  +   PT E  ++ +    I SY+ LP   YQI   +R E +
Sbjct: 84  FEGEVFWVTKGGHEDLDVPLALRPTSETAISYMESFWISSYKQLPMKLYQIVPVYRYETK 143

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
               ++R RE                  ++ +   +                        
Sbjct: 144 ATRPLIRLREV----------------STFKEAHTA------------------------ 163

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              HE    AD+   +                         + +   +        D   
Sbjct: 164 ---HESFEGADSQCAEAI----------------EIYKKVFDRLGIPYMISQRPPWDKFA 204

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             L+    +      R +++G + + G  +S+P    F   DG   YV   SYG+ + RV
Sbjct: 205 GALYTVAFDTVMPDGRVLQIGTVHHLGQNFSVPFEVRFHTEDGDKDYVWQTSYGL-SDRV 263

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ----VCRDACEKIYARLSKVGCDVF 380
           +A+++    D +G++ P  VAP ++ ++ I   ++       +  +++   L   G    
Sbjct: 264 IASLVAVHGDERGLVLPPEVAPVQVVIVPIPQKEEEQQRKVLEEAKRVEEELKARGWRTV 323

Query: 381 WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD  E   G+++   +L G P ++ +G K V   ++ +  R    R  +   E+     
Sbjct: 324 LDDRDELTPGAKYYEWELKGVPFRIEIGKKEVEGDELTVARRDLKKRVKVKKGEIHQRLK 383

Query: 440 H 440
            
Sbjct: 384 E 384


>gi|261749214|ref|YP_003256899.1| prolyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497306|gb|ACX83756.1| prolyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 490

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 154/451 (34%), Gaps = 85/451 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           +++++R+G+      +G     P G    + +   + +    TG   +  P L     + 
Sbjct: 16  NEIIIRSGLAEFSGIRGFMIIKPYGFSIWEIIKNTLDKMFKETGHKNVYFPMLIPKSSFS 75

Query: 81  VESGRYDSYGKEMLRLADRN------------------DKAMIYGPTHEEVMTDIFRSHI 122
            E     ++ KE   +                       + ++  PT E ++   FR  I
Sbjct: 76  KEKKHIANFSKECAIVTHCKLKKNTDQEELTVDPKSKLQEELVIRPTSESIIWKTFRHWI 135

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T + +     K+    L
Sbjct: 136 HSYRDLPLLLNQWGNAIRWEMRTRL-FLRTSEFLWQEGHTAHSTEKEAIEETKKI----L 190

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+                                    F  K      +       D  
Sbjct: 191 NIYTD----------------------------------FSEKIMAIPVVQGMKPYMDKF 216

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +                                + +++G   + G  +S      F
Sbjct: 217 SGSETTFSLEAM---------------------MQDGKALQIGTSHFLGQNFSKAFDVKF 255

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--- 359
              +GK  YV   S+G+ + R++  ++    D  G+I P  +AP +I +I I  + Q   
Sbjct: 256 TNKNGKKEYVWSTSWGV-STRLIGGIVMLHSDDHGLILPPKIAPIQIVIIPIYKNKQELS 314

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +  E+I   + + G  V +D+      G +F   ++ G P+++ +G   +   K E+
Sbjct: 315 KINEIAERIQKIIKEKGFSVKYDNREIFTPGWKFHEYEMKGIPIRINIGLDEIIKEKAEV 374

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             R T  + D+S  ++I +        +  L
Sbjct: 375 FRRDTYEKVDVSWNQIITFIPKLLEKIQKNL 405


>gi|227872945|ref|ZP_03991245.1| proline--tRNA ligase [Oribacterium sinus F0268]
 gi|227841197|gb|EEJ51527.1| proline--tRNA ligase [Oribacterium sinus F0268]
          Length = 478

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 147/449 (32%), Gaps = 76/449 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R + F     +  + AE+  +             KG     P G    +N+ A +     
Sbjct: 13  REEDFAQWYTDVVKKAELTDYS----------SVKGFMVIRPAGYAIWENIMAALDSRFK 62

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG    S+P L    L   ES   + +  E+  +      R ++ +   PT E +  D 
Sbjct: 63  ATGVQNCSMPLLIPQSLLEKESEHVEGFAPEVAWVTSGGSKRLEERLCVRPTSEVLFCDY 122

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   +KSYR+LP    Q     R E         +R FL                     
Sbjct: 123 YSKVVKSYRDLPQLLNQWCSVVRWEKT-------TRPFLR-------------------- 155

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                +        H     A+  E +     D     + +E  
Sbjct: 156 ---------------------TREFLWQEGHTVHATAEEAEERTLLMLDIYADVLENEL- 193

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                I +    +     +A     +  +             + ++      FG  ++  
Sbjct: 194 ----AIPVVKGRKTDKEKFAGAIATYTVEAL-------MHDGQALQCATSHNFGDGFAKA 242

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   +     V   S+GI   R + A+I    D  G++ P  +AP ++++I I+ +
Sbjct: 243 FQVQYLSKNNTVEPVHQTSWGIT-TRTIGALIMVHGDDSGLVLPPRIAPVQVNIIPIQQN 301

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +   L   G  V  DD  +  G +FA +++ G PL++ +G K +   +V 
Sbjct: 302 KEGVLDKAFDLMNTLMDAGLRVKVDDSDKTPGFKFADSEVRGIPLRLEIGPKDIEAGQVV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +  R T  +  +S E ++  +       +
Sbjct: 362 LVRRDTREKIVVSFENLVEESKKLLEQIQ 390


>gi|194336185|ref|YP_002017979.1| prolyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|259511610|sp|B4SG51|SYP_PELPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194308662|gb|ACF43362.1| prolyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 481

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 159/454 (35%), Gaps = 83/454 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +           G     P G    + + A +      
Sbjct: 13  SQWYIDLV----RSAKLADYADVR----------GCMDIRPNGYAIWEKMQAALDRMFKE 58

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVVTHGGGEELAEKLYIRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++    PE S+    +M 
Sbjct: 119 KKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHANPEESQEEVLRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             Y                                      + F  +      I  + TD
Sbjct: 178 NVY--------------------------------------KTFAEEYMAMPVIMGKKTD 199

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +                                      ++ ++ G     G  ++   
Sbjct: 200 NEKFAGAVDTWCIEAM---------------------MQDSKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  DG   YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I I   D
Sbjct: 239 DCQFQTKDGVLDYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLATRQVVIIPILRGD 297

Query: 359 QVCR-DACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +    +    +   L+K G   F D   +   G +FA  +L G P+++ +G + +     
Sbjct: 298 KAAVIERANALAQELNKNGIPSFVDSSEQNSPGWKFAEYELQGIPIRIELGPRDIEKGIC 357

Query: 417 EIKHRLTGIREDMSLEEVI-NYASHRFSNNRPVL 449
               R T  + +++L+E + +  S   +  +  +
Sbjct: 358 IAARRDTLEKTELALDETLPDQISEILNTIQESM 391


>gi|19114946|ref|NP_594034.1| mitochondrial threonine-tRNA ligase [Schizosaccharomyces pombe
           972h-]
 gi|3183172|sp|O13969|SYTM_SCHPO RecName: Full=Probable threonyl-tRNA synthetase, mitochondrial;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           Flags: Precursor
 gi|2330792|emb|CAB11266.1| mitochondrial threonine-tRNA ligase [Schizosaccharomyces pombe]
          Length = 473

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 69/461 (14%), Positives = 149/461 (32%), Gaps = 56/461 (12%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +    D    + +  L T  I   + G   +LP G +  + +   +R +    G  E+  
Sbjct: 42  ESTLNDHRTIAARQKLYTTSI--LTPGSIFFLPHGTRIYNRLVDFLRAQYQIHGFEEIIT 99

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD----RNDKAMI---YGPTHEEVMTDIFRSHIKS 124
           P +   DLW +SG + +Y KE+ R+ +     ++ +       P +      ++ S  +S
Sbjct: 100 PLIFKKDLWEKSGHWQNYEKEIFRVEESRNVEDEHSNATYGLKPMNCPGHCIVYASTERS 159

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP  F       R+E      G+ R R F   D + F  +PE  K           +
Sbjct: 160 YKELPLRFADFSPLHRNEASGALSGLTRLRCFHQDDGHIF-CSPESIKDEIKNTLTFVKQ 218

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG+  + +   + P     S +    A+ G  +              +        
Sbjct: 219 VYSLLGMNKLKLYLSTRPEEHIGSLDTWNEAENGLREALQESGETWIINEGDG------- 271

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      +  + D+  +  + +   ++    F    ++ L       
Sbjct: 272 -------------AFYGPKIDVMVADARGKWHQTATIQLD----FNLPQRFKLYYRTDAG 314

Query: 304 GADGKD----HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              G +      V +     G++     ++    +G    WP  ++P    ++ +   D 
Sbjct: 315 DNAGSEKLIKQPVMIHRAIFGSLERFMGILIEHLNGH---WPFWLSPRHAVILPVNQTD- 370

Query: 360 VCRDACEKIYARLSKVGCD-------------VFWDDMGEQIGSQFAVADLLGFPLQVIV 406
                 +++   LS    +             V  +   + IG +   + LL +  ++++
Sbjct: 371 RILTYAKQVQKELSNQEVNESEFLPLNKNTYYVDINAEAQSIGKRLRESRLLNYNYEIVI 430

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           G   V    + +  R      D     +         N + 
Sbjct: 431 GEDEVDKEILSVSSRHNHNSRDTRKMTIQQLKKEFIENVKA 471


>gi|148982342|ref|ZP_01816719.1| threonyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145960522|gb|EDK25885.1| threonyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 304

 Score =  235 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 115/336 (34%), Gaps = 41/336 (12%)

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF   +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +  
Sbjct: 1   VQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVF-CTEDQVQQE 59

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                      +   G ++I ++  + P     S E    A+        S +       
Sbjct: 60  VKACIEMVYDTYTTFGFENIVVKLSTRPEQRVGSDEMWDRAEADLKLALESMEIAYEIQE 119

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            E   +   I                                    R  + G +      
Sbjct: 120 GEGAFYGPKIEFTL---------------------------HDCLDRAWQCGTV---QLD 149

Query: 294 YSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           ++LP  + AT+ G D + H  V +    +G++     ++   + G    W   +AP +  
Sbjct: 150 FALPERLGATYVGEDNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAV 206

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ I        +  ++I  +L K G  V  D   E+IG +     L   P  ++ G + 
Sbjct: 207 VMGITDKQS---EYVQEITKKLQKSGFRVKADLRNEKIGFKIREHTLKRVPFMLVCGDQE 263

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   ++ ++ R         +++ I+Y     S+ +
Sbjct: 264 MEAGEIAVRTRKGKDLGKFKVDDFISYIQAEVSSRK 299


>gi|302545670|ref|ZP_07298012.1| threonine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463288|gb|EFL26381.1| threonine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 403

 Score =  235 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 156/421 (37%), Gaps = 43/421 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L  G       G+  WLP G    + +   IR E+ R G   +  P L  
Sbjct: 3   DHRKLGRELGLF-GTDPLIGAGLPYWLPDGAAVREALEEYIRAEERRAGYRHVYSPVLGK 61

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +  Y  +M    D   + ++  P+       I+RS  +SYR LP    ++ 
Sbjct: 62  RELYEVSGHWAHYRDDMFPPMDVGGEEVVLRPSLCPHHAVIYRSRARSYRELPLRMAELG 121

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             +R EL     G+ R R   + DA+ F    E              R +  +G++++  
Sbjct: 122 GMYRAELSGVLGGLTRVRAIQLNDAHIFCA-LEQVAGEVEGALGMIRRAYEAMGIRAVRY 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           R     + GD S +F+  ++  E  V                  + +  +    E     
Sbjct: 181 RLS---LPGD-SGKFVAGSEVWERSV--------------GVLGEVLRRVGVPYEVGKGE 222

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            A      + ++ D       +S   ++      FG +Y         GADG  H   M 
Sbjct: 223 AAFYGPKIDVQVADGAGREFTLSTVQVDFHQPERFGLQY--------VGADGAKHRPVMV 274

Query: 316 SYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              I     R VA ++E      G  +P  +AP ++ ++ +   +       E    R  
Sbjct: 275 HRSIIGSVERAVAQLVEVH----GGAFPGWLAPVQVVVLPVSEGEAGH---AEAFVERCV 327

Query: 374 KVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + G     D  + G  +G++   A L   P QV++G+K  ++ +V ++ R       M+ 
Sbjct: 328 ERGLRARVDGPERG-SLGARVRGARL--VPYQVVIGAKEAAEGQVALRLRGGRQVGVMAA 384

Query: 432 E 432
           E
Sbjct: 385 E 385


>gi|159109673|ref|XP_001705100.1| Threonyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157433179|gb|EDO77426.1| Threonyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 695

 Score =  235 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 149/425 (35%), Gaps = 43/425 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L    E   +A+   H+ + +     M H+++ G   ++  G +    + A IRE 
Sbjct: 262 SKDQLDKHIELLEEAKRRDHRNLAKEMDLFMTHKYAPGAPMFMNNGTRIYRKLEAFIREL 321

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
            +     E+  PT  + DLW  SG    Y + M  L   ++ D      P +      ++
Sbjct: 322 LHEFDYEEVMTPTFLNTDLWGISGHLQHYKENMFLLERKEKTDPQYGLKPMNCPCHCLLY 381

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++   S + LP    +  +  R+EL     G+ R   F   DA+ F  T +  +     +
Sbjct: 382 KNQHHSVQELPIRMAEFGVVHRNELSGALSGLTRVVRFEQDDAHIF-CTVDQIEQEMTGL 440

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R++   G+    +     P     S E    A+    +V  +        P +  
Sbjct: 441 IEFIKRVYTPFGIDF-ALSLSLRPEKKMGSDELWDRAEGTLRKVLTNTGLDFKENPGDG- 498

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  L D+L    +     ++    F   +K    
Sbjct: 499 -------------------AFYGPKIDVHLTDALGRQHQCGTIQLD----FNLPSKDRFD 535

Query: 298 MSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +  +          ++H V +    +G++    A++  +  G+   W   ++P +I +I 
Sbjct: 536 LLYSVYDEKTGSVKQEHPVMIHRAILGSVERFMAILIENTGGRFPFW---ISPRQIVVIP 592

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  H +      + +  R    G  V  D   E++  + AVA    +   ++VG++    
Sbjct: 593 L--HGEDIVAYAKTVRERYHSKGYFVDLDISSEKMEKKIAVAWNKKYNFIMVVGAQE--K 648

Query: 414 SKVEI 418
               +
Sbjct: 649 GTCSV 653


>gi|155061091|gb|ABS90481.1| threonyl-tRNA synthetase [Streptomyces albus]
          Length = 439

 Score =  235 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 156/439 (35%), Gaps = 50/439 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           ++  +  H+ + R   +         G+  WLP G      +   +R  + R G   +  
Sbjct: 31  KETTMHDHRRLGRELELFDTDPLIGAGLPYWLPDGAAVRHALEEYVRAAERRAGYRHVYS 90

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L   +L+  SG +  Y ++M    +   + M+  P+       I+RS  +S+R LP  
Sbjct: 91  PVLGKRELYEISGHWSHYSEDMFPPMEVGGEQMLLRPSLCPHHALIYRSRPRSHRELPLR 150

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++   +R EL     G+ R R   + DA+ F  T + +            R +  LG+
Sbjct: 151 MAELGGMYRAELSGVLGGLSRVRSIHLNDAHVF-CTLDQAAGEARAALEMIGRAYEALGI 209

Query: 191 KSIPMRAE-SGPIGGDLSH-EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +    R    GP G  ++  E    +    T+V  +       +                
Sbjct: 210 RPARFRLSLPGPGGKYVADPEKWRRSTALLTEVLDASGVAYEAVEG-------------- 255

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A      + ++ D       +S   ++      FG +Y         GADG 
Sbjct: 256 ------EAAFYGPKIDVQIADGQGRESTLSTVQVDFHQPERFGLRY--------IGADGA 301

Query: 309 DHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            H   M    +     R VA ++E      G  +P  +AP +I+++ +           E
Sbjct: 302 GHRPVMIHRSVIGSVERAVAHLVEEH----GGAFPAWLAPVQIAVLPVTG---AQVPDGE 354

Query: 367 KIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
               R + +G      D   G  +G++   A L   P QV++G +  +D +V ++ R   
Sbjct: 355 AFLRRCAALGLRAEQADPGRG-SLGARIRAARL--VPYQVVIGEEEAADGRVALRLRDGR 411

Query: 425 IREDMSLEEVINYASHRFS 443
               +  +E +       S
Sbjct: 412 RVGPLPADEALARIDALVS 430


>gi|268317819|ref|YP_003291538.1| prolyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262335353|gb|ACY49150.1| prolyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 496

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 84/469 (17%), Positives = 159/469 (33%), Gaps = 93/469 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  +     +  R A++A +  +           G    LP G    +N+ A++     
Sbjct: 8   RSVDYAQWYVDVVRAAKLADYSPVR----------GCMIILPNGYALWENMRAVLDRMFK 57

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRN-----------------DKAM 104
            TG      P       L  E+   + + KE   +                     ++ +
Sbjct: 58  ETGHENAYFPLFIPQSFLAKEAEHVEGFAKECAVVTHSRLKIDEKGQLIPDPESKLEENL 117

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
           I  PT E ++ D F   I+S+R+LP    Q     R E+R R   +R+ EFL ++ ++  
Sbjct: 118 IVRPTSETIIWDAFSRWIQSWRDLPILINQWANVVRWEMRTRL-FLRTMEFLWQEGHTAH 176

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            T E +           LRI                 I    + E++ +           
Sbjct: 177 ATREEA-------IEEALRILD---------------IYTTFAEEYMAM----------- 203

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                  I    T  +                                       R ++ 
Sbjct: 204 -----PVIQGVKTPSERFAGAVDTYCIEAL---------------------MQDGRALQA 237

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G   + G  ++      F+  + +  YV   S+G+ + R++ A++ +  D +G++ P  +
Sbjct: 238 GTSHFLGQNFAKAFDCKFQNQNNELEYVWATSWGV-STRLIGALVMTHSDDQGLVLPPRL 296

Query: 345 APFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGF 400
           AP ++ +I I  +D       +   +I   L   G  V  D     + G +F   ++ G 
Sbjct: 297 APTQVVIIPIFRNDVEKSAVLEQAGRIERELKDAGFTVKLDARETHRPGWKFNEYEVQGV 356

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           P++V +G + V    VE+  R T  +E +  E +         + +  L
Sbjct: 357 PVRVAIGPRDVEQGTVELARRDTRTKETVPQEGLAERVRTLLDDIQQNL 405


>gi|229826593|ref|ZP_04452662.1| hypothetical protein GCWU000182_01968 [Abiotrophia defectiva ATCC
           49176]
 gi|229789463|gb|EEP25577.1| hypothetical protein GCWU000182_01968 [Abiotrophia defectiva ATCC
           49176]
          Length = 507

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 155/450 (34%), Gaps = 79/450 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +             KG     P G    +N+   +     
Sbjct: 43  MDEDFAQWYTDVVKKAELADYS----------SVKGFVVLKPYGFGIWENIQKTLDSAFK 92

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P L    L   E    + +  E   +     +   + +   PT E +  D 
Sbjct: 93  STGVENVCMPLLIPESLINKEKDHVEGFAPEAAWVTHGGSEELQERLCVRPTSETLFCDF 152

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP  + Q     R E +     +R+REFL ++ ++   T E ++    +M
Sbjct: 153 YSKDIRSYRDLPKVYNQWCSVVRWE-KETRPFLRTREFLWQEGHTAHATEEEAQARTIQM 211

Query: 178 FVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              Y+  F   L +  I  +                     E + F              
Sbjct: 212 LNVYVDFFENELAIPVIKGQ-------------------KTEKEKFAGA----------- 241

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                + +              +   HN     +   +   + +   + +          
Sbjct: 242 -----VSTYTIEAMMHDGKALQSGTSHNFGDGFARAYDVTFTDKDNSIQYAHQ------- 289

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                              S+G+ + R++ A+I    D  G++ P  +AP ++ +I I  
Sbjct: 290 ------------------TSWGV-STRMIGAIIMVHGDDNGLVLPPRIAPTQVMIIPIMQ 330

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           + +   +   ++  RLS     V  DD  +  G +FA  ++ G P++V +G K +  +K 
Sbjct: 331 NKEGVLEKANELKNRLS-ADFRVKLDDSDKTPGFKFADQEMRGIPVRVEIGPKDIEANKC 389

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +  R    + ++SL+E+    +    + +
Sbjct: 390 IVVRRDNREKTEVSLDELETKLAEILESIQ 419


>gi|323669590|ref|NP_001191177.1| bifunctional aminoacyl-tRNA synthetase [Danio rerio]
          Length = 1511

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 141/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  +   G Y   P      D +      E  + G    
Sbjct: 1016 EAKKEENLADWYSQVITKAEMIEYYDVSGCYVLRPWSYSIWDAIKEFFDREIKKLGVENC 1075

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1076 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1135

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E +     ++    L +
Sbjct: 1136 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATKEEATEEVLQI----LDL 1191

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + R                                     +      +    T+ +    
Sbjct: 1192 YAR----------------------------------VYEELMAIPVVKGRKTEKEKFAG 1217

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1218 GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSRMFEIVFED 1257

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+       S+GI   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1258 PKKPGEKQLAYQNSWGIT-TRTIGVLTMVHGDNMGLVLPPRVACLQVIIIPCGITATLPE 1316

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A   +  D C K  +RL K    V  D       G +F   +L G P++  VG K +   
Sbjct: 1317 AEKDLLLDQCSKYLSRLQKADIRVKADLRDNYSPGWKFNHWELKGVPIRFEVGPKDLKQG 1376

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  +   +      +     +  L
Sbjct: 1377 QFVAVRRDTGEKITVKEADAEKKIPNLLEEIQNNL 1411


>gi|150400311|ref|YP_001324078.1| prolyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|171460844|sp|A6USJ4|SYP_METVS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150013014|gb|ABR55466.1| prolyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 461

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/459 (18%), Positives = 164/459 (35%), Gaps = 87/459 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSEILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEV 113
           +  + T   E   P L   +L  + G     +  E+  +        +  +   PT E  
Sbjct: 46  KLLDDTNHDETLFPMLIPENLLAKEGEHIKGFEDEVYWVTHGGKSPLEIKLALRPTSETT 105

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKH 172
           M  + +  IK + +LP   YQ+   FR E +    ++R RE +  K+A++   T +    
Sbjct: 106 MYYMMKQWIKVHTDLPMKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHSTQDDCNK 165

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +    Y +         I +                         V  SK       
Sbjct: 166 QIKEAIEIYGKF-----FDEICIP------------------------VIISKRPEWDKF 196

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P  +                               FD++  +     + +++G +   G 
Sbjct: 197 PGADY---------------------------TMAFDTIFPDG----KTMQIGTVHNLGQ 225

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++      F+  DG   Y     YGI + R +A++I    D KG++ P  VAP +I LI
Sbjct: 226 NFAKTFELEFETPDGNKDYAYQTCYGI-SDRAIASLIAIHGDEKGLVIPIDVAPIQIVLI 284

Query: 353 NI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  K  +++  +  +++   L      V  DD   + G ++   ++ G PL++ +G + 
Sbjct: 285 PLLFKGKEEIVIEKIKELSKILKTK-YRVHVDDRDIRPGRKYNDWEIKGVPLRIEIGPRD 343

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + K  I  R  G +  +    ++N     F + +  L
Sbjct: 344 IEEGKAVIVRRDNGQKMTVEAFNILNEVEKTFEDYKASL 382


>gi|224539709|ref|ZP_03680248.1| hypothetical protein BACCELL_04618 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518677|gb|EEF87782.1| hypothetical protein BACCELL_04618 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 520

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 167/450 (37%), Gaps = 89/450 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+++  +  Q + +G     P G    + +   + +    TG +    P L       
Sbjct: 43  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKIQRQLDDMFKETGHVNAYFPLLIPKSFLS 102

Query: 81  VESGRYDSYGKEMLRLADRN------------------DKAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE   +                      ++ +I  PT E ++ + +++ I
Sbjct: 103 REAEHVEGFAKECAVVTHHRLKNAPDGSGVIVDPEAKLEEELIIRPTSETIIWNTYKNWI 162

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVS 180
            SYR+LP    Q     R E       MR+R FL    + +    T   ++    +  V 
Sbjct: 163 NSYRDLPILCNQWANVMRWE-------MRTRLFLRTAEFLWQEGHTAHATREEAEEEAVR 215

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L ++                            A+  E         +   + S N  F 
Sbjct: 216 MLNVY----------------------------AEFAEK---YMAVPVVKGVKSANERFA 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +   +I                               + ++ G   + G  ++     
Sbjct: 245 GALDTYTIEAM------------------------MQDGKALQSGTSHFLGQNFAKAFDV 280

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  + ++
Sbjct: 281 QFVNKENKMEYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEM 339

Query: 361 CRDACEKIY---ARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   EK+    A+L  +G  V +D+   ++ G +FA  +L G P+++++G + + ++ +
Sbjct: 340 LQKINEKVAGIVAKLKSMGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTM 399

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           E+  R T  +E +S + +  Y  +     +
Sbjct: 400 EVMRRDTLEKETLSCDGIEEYVKNLLEEIQ 429


>gi|71004672|ref|XP_757002.1| hypothetical protein UM00855.1 [Ustilago maydis 521]
 gi|46096696|gb|EAK81929.1| hypothetical protein UM00855.1 [Ustilago maydis 521]
          Length = 734

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 138/445 (31%), Gaps = 84/445 (18%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  M+  +   G Y   P       ++      E  + G      P   SAD L  
Sbjct: 240 QVLRKGDMLDYYDVSGCYILKPWSYFVWQSIQNFFDAEIKKIGVENCYFPMFVSADVLER 299

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q   
Sbjct: 300 EKDHIEGFAPEVAWVTKAGSSDLERPVAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWNS 359

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ +    T   S    +K       + H L L    +  
Sbjct: 360 VVRWEFKHPQPFLRTREFLWQEGH----TAHISLEEADK------EVMHILDL-YRQVY- 407

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                      K      +P   ++ +                 
Sbjct: 408 --------------------------EKLLAVPVVPGVKSEKEKFAGGYYTTTVEGFVPT 441

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----------DG 307
                               + RGI+ G     G  +S       +            +G
Sbjct: 442 --------------------TGRGIQGGTSHCLGQNFSKMFGIMVEDPKAPEEFRGKDEG 481

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQV 360
           K H V   S+G+ + R +  ++    D  G++ P  VA  ++ +I             Q 
Sbjct: 482 KLH-VWQNSWGL-STRTIGVMVMVHGDDDGLVMPPRVAQVQVIIIPCGIGVKTSAQEKQN 539

Query: 361 CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             DAC++    L   G     D       G +F   +L G P+++ +G K +    V   
Sbjct: 540 IMDACDQTAKDLQAAGIRAKADLRDNYSPGFKFNDWELRGVPVRLEIGPKDLEKKSVVAV 599

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R    +   S++ +    S     
Sbjct: 600 RRDNKAKTSFSVDGLYGSISTLLDQ 624


>gi|207092740|ref|ZP_03240527.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 204

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 120/204 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG 204
           Y  I   LGL    + A+SG IGG
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGG 204


>gi|151941725|gb|EDN60086.1| mitochondrial aminoacyl-tRNA synthetase, threonine [Saccharomyces
           cerevisiae YJM789]
 gi|190409649|gb|EDV12914.1| threonyl-tRNA synthetase, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
 gi|323304221|gb|EGA57996.1| Mst1p [Saccharomyces cerevisiae FostersB]
 gi|323308307|gb|EGA61553.1| Mst1p [Saccharomyces cerevisiae FostersO]
 gi|323332690|gb|EGA74095.1| Mst1p [Saccharomyces cerevisiae AWRI796]
 gi|323354220|gb|EGA86064.1| Mst1p [Saccharomyces cerevisiae VL3]
          Length = 462

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 150/445 (33%), Gaps = 51/445 (11%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADL 79
            S +  L   M    S G   +LP G K  + +   ++ +Q    G  E+  P +    L
Sbjct: 42  VSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL 99

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W +SG +++Y  +M ++   D   +     P +      IF    +SY  LP  F     
Sbjct: 100 WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSP 159

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R+E      G+ R R+F   D + F  TP   K            +++++    +   
Sbjct: 160 LHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKI-FPFVK-- 215

Query: 197 AESGPIGGDLSHE-FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 GG  +   + +   T            +          ++      +     A 
Sbjct: 216 ------GGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           Y    D+      D L +  +V+   ++    F    ++       FK  D      + +
Sbjct: 270 YGPKLDIMVT---DHLRKTHQVATIQLD----FQLPERF----DLKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++  S++G    WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLIDSNEG---RWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 VG--------------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 EREADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTG---IREDMS--LEEVINYASH 440
           R       +  MS   E+ I    +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKN 460


>gi|259147648|emb|CAY80898.1| Mst1p [Saccharomyces cerevisiae EC1118]
          Length = 462

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 150/445 (33%), Gaps = 51/445 (11%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADL 79
            S +  L   M    S G   +LP G K  + +   ++ +Q    G  E+  P +    L
Sbjct: 42  VSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL 99

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W +SG +++Y  +M ++   D   +     P +      IF    +SY  LP  F     
Sbjct: 100 WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSP 159

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R+E      G+ R R+F   D + F  TP   K            +++++    +   
Sbjct: 160 LHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKI-FPFVK-- 215

Query: 197 AESGPIGGDLSHE-FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 GG  +   + +   T            +          ++      +     A 
Sbjct: 216 ------GGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           Y    D+      D L +  +V+   ++    F    ++       FK  D      + +
Sbjct: 270 YGPKLDIMVT---DHLRKTHQVATIQLD----FQLPERF----DLKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++  S++G    WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLIDSNEG---RWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 VG--------------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 EREADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTG---IREDMS--LEEVINYASH 440
           R       +  MS   E+ I    +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKN 460


>gi|197303940|ref|ZP_03168972.1| hypothetical protein RUMLAC_02677 [Ruminococcus lactaris ATCC
           29176]
 gi|197296908|gb|EDY31476.1| hypothetical protein RUMLAC_02677 [Ruminococcus lactaris ATCC
           29176]
          Length = 478

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 155/415 (37%), Gaps = 66/415 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    +N+   +      TG   + +P +    L   E    + +  E+  
Sbjct: 36  KGCMNYLPNGYALWENIQKELDARFKETGVENVYLPVMIPESLLQKEKDHIEGFAPEVAW 95

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +         +     PT E +  D++   ++SYR+LP  + Q     R E +     +R
Sbjct: 96  VTHGGTEPLQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWE-KTTRPFLR 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E ++    +M+    R++       + +   SG           
Sbjct: 155 SREFLWQEGHTIHATYEEAEERTKQMW----RVYRDFVQDVLAIPVVSG----------- 199

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E++ F       + I +   D   + S  S       P A              
Sbjct: 200 ---RKTESEKFAGAQDT-YTIEALMHDGKALQSGTSHFFGSAFPNA-------------- 241

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                             FG +YS          + + H V   S+G+ + RV+ A+I  
Sbjct: 242 ------------------FGIQYS--------DKNNELHEVYETSWGM-STRVIGALIMV 274

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  VAP +  +I I  H +   D   ++   L   G     DD  +  G +
Sbjct: 275 HGDDSGLVIPPRVAPVQTMVIPIAQHKEGVLDKANELLDTLKAAGYKAKIDDSDKAPGWK 334

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F+  ++LG P ++ +G K + +++  I  R T  +  +SL+E+    +      +
Sbjct: 335 FSGQEILGIPTRIEIGPKDIENNQAVIVRRDTREKIVVSLDEITTKLAEVLETMQ 389


>gi|255720300|ref|XP_002556430.1| KLTH0H13046p [Lachancea thermotolerans]
 gi|238942396|emb|CAR30568.1| KLTH0H13046p [Lachancea thermotolerans]
          Length = 675

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/441 (15%), Positives = 147/441 (33%), Gaps = 76/441 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      + +     ++    G      P  + S  L 
Sbjct: 187 QQVLTKGEMLDYYDVSGCYILRPPSYAIWEQIQRWFDDKIKSIGVQNAYFPMFVSSRVLE 246

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   ++SYR+LP    Q  
Sbjct: 247 KEKDHIEGFAPEVAWVTRAGSSELEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWN 306

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  L  E +     ++   Y  ++    L ++P+ 
Sbjct: 307 SVVRWEFKHPQPFLRTREFLWQEGHTAHLGQEEAIEEVMQILDFYAGVYEE--LLAVPV- 363

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F               DF                 
Sbjct: 364 ---------------VKGKKTEKEKFAG------------GDFTTTCEGYIPQ------- 389

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY---VQ 313
                                + RGI+     + G  +S   + + +   G +H      
Sbjct: 390 ---------------------TGRGIQGATSHHLGQNFSKMFNISVENPLGPEHPKVFAH 428

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACE 366
             S+G+ + RV+  ++    D KG++ P  V+  +  ++ +  + +   +          
Sbjct: 429 QNSWGL-STRVIGVMVMIHSDNKGLVIPPRVSQHQCVVLPVGINSKTSDEQRAVIHQKAR 487

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +I  +L       F D +     G +F+  +L G PL++  G K ++  +V +  R    
Sbjct: 488 EIEQKLRASNVRAFGDYNDNYTPGWKFSQYELKGIPLRLEFGPKDMAQDQVSVVRRNDNR 547

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +  +   ++           +
Sbjct: 548 KYTVKTADLETRIPEILEEMQ 568


>gi|148655910|ref|YP_001276115.1| prolyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|166980153|sp|A5UU62|SYP_ROSS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148568020|gb|ABQ90165.1| prolyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 480

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 159/458 (34%), Gaps = 86/458 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L I+Q+    A++A +          +  KG   + P G    + +   + +    
Sbjct: 14  SQWYLDIVQQ----ADLADYA---------EVVKGCIVFKPTGYAIWEAIQRGLDDRIKA 60

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
           TG +    P L     L  E+   + +  E+  +     +   +  +  PT E ++   +
Sbjct: 61  TGHVNAYFPLLIPKSFLMKEAEHVEGFAPEVAEVTRAGGEDLAEPYVIRPTSETIIGYFY 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++       
Sbjct: 121 SKWVRSYRDLPLLINQWANVMRWEMRTR-PFLRTTEFLWQEGHTVHATEEDAERET---- 175

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I H +    +        I G  S          E + F                
Sbjct: 176 ---LLILHEVYADFVEKEMAIPVIKGLKS----------EKEKFPGALRS---------- 212

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                             E      R ++ G     G  ++   
Sbjct: 213 -------------------------------YCIEAMMQDGRALQAGTSHNLGQNFARAF 241

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             T+        Y    S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I  +D
Sbjct: 242 DITYTDQQNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLVIPPRLAPTQVVVVPIYRND 300

Query: 359 Q---VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               V  +A +++ A           DD      G +F   +L G P++V +G K +   
Sbjct: 301 AERSVVMEAVQRMTAEWKG-RLRFKIDDRDNLTPGFKFNEWELKGVPIRVEIGPKDIEKG 359

Query: 415 KVEIKHRLTGIRE---DMSLEEVINYASHRFSNNRPVL 449
            V I  R    RE    +  + + +  +      +  L
Sbjct: 360 SVAIARRDQPGREGKSFVPQDGLTDRLTALLEEIQQAL 397


>gi|172012|gb|AAA34808.1| thr-tRNA-synthetase [Saccharomyces cerevisiae]
          Length = 462

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 150/445 (33%), Gaps = 51/445 (11%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADL 79
            S +  L   M    S G   +LP G K  + +   ++ +Q    G  E+  P +    L
Sbjct: 42  VSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL 99

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W +SG +++Y  +M ++   D   +     P +      IF    +SY  LP  F     
Sbjct: 100 WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSP 159

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R+E      G+ R R+F   D + F  TP   K            +++++    +   
Sbjct: 160 LHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKI-FPFVK-- 215

Query: 197 AESGPIGGDLSHE-FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 GG  +   + +   T            +          ++      +     A 
Sbjct: 216 ------GGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPSDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           Y    D+      D L +  +V+   ++    F    ++       FK  D      + +
Sbjct: 270 YGPKLDIMVT---DHLRKTHQVATIQLD----FQLPERF----DLKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++  S++G    WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLIDSNEG---RWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 V--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 ELEADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTG---IREDMS--LEEVINYASH 440
           R       +  MS   E+ I    +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKN 460


>gi|296228693|ref|XP_002759920.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 2
           [Callithrix jacchus]
          Length = 588

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 136/408 (33%), Gaps = 55/408 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------- 96
            D ++ + + E  R G  E+  PTL S  LW +SG ++ Y ++M  +             
Sbjct: 202 RDQLHRLFKAEYARRGFFEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPASSQS 261

Query: 97  --ADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
             + R+        P +      +F    +S+R LP          R E      G+ R 
Sbjct: 262 DHSTRHTTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLCGLTRL 321

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F  T +  +            ++  LG     +   + P G         
Sbjct: 322 RCFQQDDAHIFCTT-DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSG--------- 370

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D           +      +     A Y    DVH   L D+L 
Sbjct: 371 --------FLGDPCLWDQAEQVLQQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALG 419

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIES 331
              +     ++    F    ++       +KG  G  +  V +    +G++  +  V+  
Sbjct: 420 RPHQCGTIQLD----FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAE 471

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGS 390
           S  GK   WP  ++PF++ +I +    +   +   +    L   G     D D    +  
Sbjct: 472 SCRGK---WPLWLSPFQVVVIPVGTEQE---EYARETQQSLQAAGLVCDLDADSRLTLSR 525

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +   A L  +  Q +VG K  S S V I+ R   +  + SL E +   
Sbjct: 526 RIRRAQLAHYNFQFVVGQKEQSKSTVNIRTRDNRLLGEWSLPEAVQRL 573


>gi|291557497|emb|CBL34614.1| prolyl-tRNA synthetase, family II [Eubacterium siraeum V10Sc8a]
          Length = 574

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/278 (34%), Positives = 136/278 (48%), Gaps = 1/278 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K      +E P D +I SH +M+R G I   + GI+S     ++    +  IIREE
Sbjct: 1   MKLDKLVGDRFKERPSDCQIDSHAIMVRGGYIKYMANGIFSSYTPTKRITKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P +  A LW ESGRYDS G E+LR  DRN   M+ G THEE    + R 
Sbjct: 61  MDKIDGQEVQFPVVMPASLWQESGRYDSIGSELLRFTDRNRMPMVLGMTHEEAAVHLVRE 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   +
Sbjct: 121 YGKSYTKYPFMIYQIQTKFRDEARPRGGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHKA 180

Query: 181 YLRIFHRLGLKSIP-MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  IF R G+  +  ++++SG +GG +SHEF++L   GE  +    +             
Sbjct: 181 YENIFRRAGVPEVISVKSDSGMMGGSISHEFMLLTPVGEDTIASCHECGFNANMEAADSI 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            +                    +     F   P+ K  
Sbjct: 241 IENTRDEVSAPMELVHTPNIHTIEEICDFLHTPKEKSC 278



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 105/212 (49%)

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N +      L+   +     Y   + + +  +  +  ++    +RGIEVG+IF  GT
Sbjct: 356 CGANKEEYHYTGLDIDRDCANVEYHDFAKILDGGICPNCHKHSISISRGIEVGNIFQLGT 415

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KY+  M+ T+  ++G++    MG YGIG  R+ A+V E+ HD  G IWP  +AP+++ + 
Sbjct: 416 KYTKTMNMTYLDSNGEEKTPIMGCYGIGVGRLAASVCEAHHDDYGPIWPMPIAPWQVHIC 475

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +++ D   +   +K+Y  L   G +V +DD     G  F+ ADLLG PL+V+V  + + 
Sbjct: 476 AVRSDDADVKACADKLYNTLQNAGAEVIYDDRQVSAGVMFSDADLLGVPLRVVVSPRNLK 535

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+  EI  R       + +EE  +        
Sbjct: 536 DNCCEISARDKSFSYKVPVEETADKVQELIKE 567


>gi|301117334|ref|XP_002906395.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262107744|gb|EEY65796.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 603

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/235 (39%), Positives = 140/235 (59%), Gaps = 4/235 (1%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  + P  ++ P DA + SH+L++R G + +   G+++ LPLG++ +  + A+I +E  
Sbjct: 34  RSVLWAPTEKQAPSDAAVPSHQLLVRAGFVRKGGHGLFALLPLGRRVVAKLEALIDDEMC 93

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   + +  L   +LW +SGR+ S G E++ L DR +  +I GPTHEE +T +  +H 
Sbjct: 94  KIGGNRVDLTVLTPNELWKQSGRWQSRGPELMTLEDRREDLLILGPTHEESITSLVAAHY 153

Query: 123 KS--YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +    +     YQI  KFRDE+RPRFG++R+REF+MKD YSFD + E +  +Y  +  +
Sbjct: 154 NAAGTADSSLRLYQIGRKFRDEIRPRFGLLRAREFVMKDMYSFDTSYEKALQTYEDVTAA 213

Query: 181 YLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIP 233
           Y  I   RL L    + A+SG IGG+LSHEF VLAD GE  +  CS    D+   
Sbjct: 214 YNEILISRLKLPVKRVEADSGNIGGNLSHEFHVLADVGEDAILSCSSSECDYAAN 268



 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 12/244 (4%)

Query: 215 DTGETQVFCS---KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           D GE  +      K   +  + +     + +             +            +S 
Sbjct: 359 DEGELHLLLDDSLKQSNNASVEALCAAAETLSKYQKHTHLAWGHFRLAQAGDCCPRCNSG 418

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RGIEVGH+FY G KYS P  AT+  A      ++MG YG+G  R+VAA +E+
Sbjct: 419 GAAVLEDKRGIEVGHVFYLGQKYSKPFGATYTDAKNNKVSLEMGCYGLGVSRLVAAAVEA 478

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSK---VGC---DVFWDD 383
           SHD  GI WP  +AP+K+ +++I  K  D     A   +  +L+     G    DV  DD
Sbjct: 479 SHDDHGIAWPMEIAPYKVLVMSIGGKKQDDPVSQAAWYVAGKLASGDVAGLVRDDVLLDD 538

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              E  GS+ A ++L+G+P +V+VG +F  +  VE++ R T  +  ++ +E+  + +   
Sbjct: 539 RWRESPGSKLAESELIGYPYRVVVGKRFTKEGLVEVQTRATMEKTFLTPDELPTFFASLV 598

Query: 443 SNNR 446
             ++
Sbjct: 599 EADK 602


>gi|28948887|pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948888|pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948889|pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948890|pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
          Length = 459

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 94/450 (20%), Positives = 166/450 (36%), Gaps = 83/450 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  IL++    AEI           +    KG   +LP G K       IIR   +
Sbjct: 7   FSEWYSDILEK----AEIYD---------VRYPIKGCGVYLPYGFKIRRYTFEIIRNLLD 53

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
            +G  E   P L   DL   E+     +  E+  +        D  +   PT E  +  +
Sbjct: 54  ESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYM 113

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSYNK 176
            +  +K + +LP   YQI   FR E +    ++R RE    K+A++   T E +++   +
Sbjct: 114 MKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKE 173

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y + F  LG+  +       P                         +  FP     
Sbjct: 174 AISIYKKFFDTLGIPYLI---SKRPE------------------------WDKFPGAEYT 206

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             FD I      ++  T                      +  ++  E+  IF   T    
Sbjct: 207 MAFDTIFPDGRTMQIATVH-----------------NLGQNFSKTFEI--IFETPT---- 243

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                     G   Y     YGI + RV+A++I    D KG+I P  VAP ++ ++ +  
Sbjct: 244 ----------GDKDYAYQTCYGI-SDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIF 292

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K  + +  +  ++IY +L      V  DD   + G +F   ++ G PL++ VG K + + 
Sbjct: 293 KGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENK 351

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           K+ +  R T  +  +   +++       +N
Sbjct: 352 KITLFRRDTMEKFQVDETQLMEVVEKTLNN 381


>gi|148377610|ref|YP_001256486.1| threonyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291656|emb|CAL59042.1| Threonyl tRNA synthetase [Mycoplasma agalactiae PG2]
          Length = 582

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/449 (14%), Positives = 147/449 (32%), Gaps = 38/449 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIRE 59
           SK  L        D +   H+ + +   I   S     G   WL  G    + +  ++ +
Sbjct: 164 SKDELDKYLALLADRKERDHRKIGKDMKIFTFSPLAGQGFPIWLENGMYIHNEIRNLVLK 223

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              + G  E+  P   +  L+  SG    Y  +M +     ++ +I  P        ++ 
Sbjct: 224 LDKKYGFTEVLTPHFGAELLYKTSGHLAHYKDDMFKPLLVENETLIPRPMTCPHHIIVYN 283

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LP  + +    +R E      G+ R R  L+ + + F +  +       +M+
Sbjct: 284 TEKHSYRDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHLF-VKYDQIASEVKRMY 342

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                +     ++   +                   D+     + + D +     +    
Sbjct: 343 KQIKEMLSIFNIEISYISLSLR--------------DSNNKDKYFNNDSIWNKAEAM--- 385

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +  +    +        AA      +   D +L     VS   ++              
Sbjct: 386 LEKALKDMKVNYTKVEGEAAFYGPKIDIQIDTALGHEITVSTIQLDFLQPEK-------- 437

Query: 298 MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++   + K+    M   G IG      A++     G    W   +AP ++++I +  
Sbjct: 438 FDLSYIDKNNKEVRPIMIHRGLIGTYERFVAILLEQTKGNLPFW---IAPKQVTIIPVNL 494

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      +K+  +L      V  DD  E++  +   A +     Q+I+GS  ++ + +
Sbjct: 495 --EENLAYVKKVAKKLLNNDFRVKIDDSDERLNKKIRNAQVSKSKFQLILGSNEMNSNTI 552

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +         +S+ + I       +N 
Sbjct: 553 SYREYGKEETTTVSINDFIKLLKKLRNNY 581


>gi|6322654|ref|NP_012727.1| Mst1p [Saccharomyces cerevisiae S288c]
 gi|549032|sp|P07236|SYTM_YEAST RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; Flags:
           Precursor
 gi|486345|emb|CAA82038.1| MST1 [Saccharomyces cerevisiae]
 gi|285813075|tpg|DAA08972.1| TPA: Mst1p [Saccharomyces cerevisiae S288c]
          Length = 462

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 150/445 (33%), Gaps = 51/445 (11%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADL 79
            S +  L   M    S G   +LP G K  + +   ++ +Q    G  E+  P +    L
Sbjct: 42  VSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL 99

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W +SG +++Y  +M ++   D   +     P +      IF    +SY  LP  F     
Sbjct: 100 WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSP 159

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R+E      G+ R R+F   D + F  TP   K            +++++    +   
Sbjct: 160 LHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKI-FPFVK-- 215

Query: 197 AESGPIGGDLSHE-FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 GG  +   + +   T            +          ++      +     A 
Sbjct: 216 ------GGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           Y    D+      D L +  +V+   ++    F    ++       FK  D      + +
Sbjct: 270 YGPKLDIMVT---DHLRKTHQVATIQLD----FQLPERF----DLKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++  S++G    WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLIDSNEG---RWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 V--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 ELEADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTG---IREDMS--LEEVINYASH 440
           R       +  MS   E+ I    +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKN 460


>gi|315652419|ref|ZP_07905407.1| proline--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485318|gb|EFU75712.1| proline--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 479

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 153/427 (35%), Gaps = 67/427 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           +L+  ++   S KG     P G    +N+   I      TG     +P      L   E+
Sbjct: 26  VLKAELVDYTSVKGCLVIRPAGYAIWENMKNEIDRRFKETGIENCYLPMFIPESLLQKEA 85

Query: 84  GRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     ++ D+ +   PT E +  D +   +KSYR+LP    Q     
Sbjct: 86  DHVEGFAPEVAWVTYGGMEKLDERLCVRPTSETLFCDYYAGAVKSYRDLPQLLNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E         +R FL                                           
Sbjct: 146 RWEKT-------TRPFLR------------------------------------------ 156

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  S EF  L   G T    +K+  D  +   +   D      +I           
Sbjct: 157 -------SREF--LWQEGHTVHATAKEAHDRTVQMLDVYADFFEKDLAIPVIKGVKTEKE 207

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                E  +    E      + ++ G   YFG  ++   + TF   D +   V   S+G+
Sbjct: 208 KFAGAEATY--TIEALMHDGKALQSGTSHYFGDGFAKAFNVTFTDKDNQVKPVFETSFGM 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ AVI    D  G+  P  +AP ++++I + AH +   DA   +Y RL   G  V
Sbjct: 266 T-TRIIGAVIMVHGDNSGLKLPPHIAPVQVNIIPVAAHKEGVLDAANTLYDRLKVAGLRV 324

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D+  +  G +FA +++ G PL++ +G K + +++     R TG +  +SL+ V   A 
Sbjct: 325 KLDNSEKSPGFKFAESEMRGIPLRIEIGPKDIENNQCVFVRRDTGEKSFVSLDNVEGDAK 384

Query: 440 HRFSNNR 446
               N +
Sbjct: 385 DCLENIQ 391


>gi|298373192|ref|ZP_06983182.1| proline--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298276096|gb|EFI17647.1| proline--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 493

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 161/465 (34%), Gaps = 92/465 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E     E  S     L+++  +    + +G     P G    + + A + +    TG 
Sbjct: 5   LKELTSSEENYSQWYNDLVVKADLAENSAVRGCMVIKPYGYAIWEKMQAQLDKMFKETGH 64

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P       L  E+   + + KE   +                    + ++ +I  
Sbjct: 65  SNAYFPLFIPKSYLSREADHVEGFAKECAVVTHYRLKNSPDGKGVTVDPAAKLEEELIVR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-- 165
           PT E ++   +++ I+SYR+LP    Q     R E       MR+R FL    + +    
Sbjct: 125 PTSETIIWSTYKNWIQSYRDLPILVNQWANVVRWE-------MRTRLFLRTAEFLWQEGH 177

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T   ++    +     L                             V AD  E       
Sbjct: 178 TAHATREEAMEEATKMLN----------------------------VYADFAER---YMA 206

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             +   I S N  F   +    I                               + ++ G
Sbjct: 207 LPVVKGIKSANERFAGALETFCIEAM------------------------MQDGKALQAG 242

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              + G  ++      F   D K  YV   S+G+ + R++ A+I +  D  G++ P  +A
Sbjct: 243 TSHFLGQNFAKAFDVQFVNKDNKLEYVWATSWGV-STRLMGALIMAHSDNNGLVLPPRLA 301

Query: 346 PFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
           P ++ ++ I  + +      E+I+    RL  +G  V +DD   ++ G +FA  +L G P
Sbjct: 302 PIQVVIVPIYKNAEQLAAVAERIHPVVDRLRSLGVSVKFDDSDNKKPGWKFAEYELKGVP 361

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +++ +G + + +  VE+  R    ++ M LE +  Y        +
Sbjct: 362 VRLALGGRDLENGTVEVFRRDKLEKQTMPLEGIEQYIVSLLDEIQ 406


>gi|48477666|ref|YP_023372.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430314|gb|AAT43179.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 710

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/457 (16%), Positives = 153/457 (33%), Gaps = 26/457 (5%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++     +   RD      ++ L      + + G+  + P G    + +   + E   
Sbjct: 260 LNEFLKNREEAMKRDHRRIGQEMDLFI-FDTERAPGMPFYTPNGAVIRNELIKYMGEINA 318

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R    E+    +    +W +SG YD Y  +M      N +     P +      IF+  I
Sbjct: 319 RNNWQEVWTAHVFRDLIWKQSGHYDKYKNDMFLFQLENGEHYGLKPMNCPGHITIFQRGI 378

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR++P  + +    +R E      G+ R R F + D + F L  +      + +    
Sbjct: 379 YSYRDMPVKYCEPGTVYRYEKSGEMGGLTRPRGFTIDDGHGF-LRQDQILEEVSSLLGMI 437

Query: 182 LRIFHR-LGLKSIPMRAESGPIGGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             +F+  LG                 ++  E+          +      ++ P  S    
Sbjct: 438 HEVFNTILGNVEFSFDLSVMDKNSPENYLIEYKCRNCGNVFMLRAGSSKIECPKCSSKDL 497

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDS-------LPENKRVSARGIEVGHIFYFG 291
             D    ++  E       + +  + E   ++           K    R  ++  I    
Sbjct: 498 EMDFSMWDAATENLRKALESRNLNYKEYPGEAAFYGPKIDVHVKDALNRFWQLSTI---Q 554

Query: 292 TKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             + +P      +  +DG K+  V +     G+     A++   ++GK   W   ++P +
Sbjct: 555 LDFFMPINFDLYYINSDGKKERPVIIHRAIYGSYERFIAILLEHYNGKLPTW---LSPIQ 611

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             +I +    +   +  E I +   K       D   E I  +  +   +     ++VG 
Sbjct: 612 SYVIPV---SENYNEYAESINSLFVKNNIRSKIDLSSETISKKIKMIRKMRPSYIIVVGE 668

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           K   +  V I++R      +M + E I       S+ 
Sbjct: 669 KEEHNKSVSIRNRKDK-TIEMPVNEFIEKIKDEISSR 704


>gi|323336851|gb|EGA78113.1| Mst1p [Saccharomyces cerevisiae Vin13]
 gi|323347699|gb|EGA81963.1| Mst1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 462

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 150/445 (33%), Gaps = 51/445 (11%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADL 79
            S +  L   M    S G   +LP G K  + +   ++ +Q    G  E+  P +    L
Sbjct: 42  VSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL 99

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W +SG +++Y  +M ++   D   +     P +      IF    +SY  LP  F     
Sbjct: 100 WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSP 159

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R+E      G+ R R+F   D + F  TP   K            +++++    +   
Sbjct: 160 LHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKI-FPFVK-- 215

Query: 197 AESGPIGGDLSHE-FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 GG  +   + +   T            +          ++      +     A 
Sbjct: 216 ------GGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           Y    D+      D L +  +V+   ++    F    ++       FK  D      + +
Sbjct: 270 YGPKLDIMVT---DHLRKTHQVATIQLD----FQLPERF----DLKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++  S++G    WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLIDSNEG---RWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 VG--------------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 EREADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTG---IREDMS--LEEVINYASH 440
           R       +  MS   E+ I    +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKN 460


>gi|15678639|ref|NP_275754.1| prolyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334356|sp|O26708|SYP_METTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2621691|gb|AAB85117.1| prolyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 482

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 157/454 (34%), Gaps = 81/454 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    AEI                KG++ W+P G     N   I+R   +
Sbjct: 20  FSEWFHNILEE----AEIIDQ---------RYPVKGMHVWMPHGFMIRKNTLKILRRILD 66

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
                E+  P L    +L  E+     +  E+  +      +  + +   PT E VM  +
Sbjct: 67  -RDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 125

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++S+ +LP  FYQ+   FR E +    ++R RE                       
Sbjct: 126 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITT-------------------- 165

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        +H     A   E QV       +  +     
Sbjct: 166 --------------------------FKEAHTIHATASEAEEQV-------ERAVEIYKE 192

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F+ +     I  +        S+                  + +++G +   G  ++  
Sbjct: 193 FFNSLGIPYLITRRPPWDKFPGSEYTVAFD------TLMPDGKTLQIGTVHNLGQTFART 246

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--K 355
               F+  +G   YV    YG+ + RV+A+VI    D  G+  P  VA  ++ ++ I  K
Sbjct: 247 FEIKFETPEGDHEYVHQTCYGL-SDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFK 305

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +AC ++ +RL   G  V  DD   + G ++   ++ G PL+V +G + +    
Sbjct: 306 KAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGA 365

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             I  R TG +    L+ +         +    L
Sbjct: 366 AVISRRDTGEKVTADLQGIEETLRELMKDILENL 399


>gi|255523430|ref|ZP_05390399.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296184712|ref|ZP_06853123.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255512888|gb|EET89159.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296050494|gb|EFG89917.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 478

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 157/447 (35%), Gaps = 77/447 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +    +I           P      +N+   +     
Sbjct: 14  MDEDFAQWYTDIIKKAELADYSSVRGCMIIR----------PYAYAMWENIQGDLDRRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +    ++ +       PT E +  + 
Sbjct: 64  ETGHENVYMPMFIPEGLLQKEKDHVEGFAPEVAWVTQGGNEELTERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY +LP  + Q     R E +     +R+ EFL  + ++   T E S+    +M
Sbjct: 124 YAKTVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWNEGHTVHATQEESEEETIRM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y     ++   +IP+                +  +  E + F       + I +   
Sbjct: 183 LNVYADHVEQM--LAIPV----------------IRGEKTEKERFAGAIGT-YTIEALMH 223

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + +  S         A      +                                 
Sbjct: 224 DGKALQAATSHNFGTNFAEAFNMQYTD--------------------------------- 250

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   +GK  YV   S+GI   R++ A+I    D  G+  P  +AP ++ ++ I  H
Sbjct: 251 -------KNGKLQYVHQTSWGIT-TRLIGAIIMVHGDDSGLKLPPRIAPIQVVIVPIAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   ++ AR+SK+   V  DD  +  G +FA  ++ G P+++ VG K +  ++V 
Sbjct: 303 KEGVLEKAAELKARISKI-ARVKVDDSDKMPGWKFAEYEMKGVPIRLEVGPKDIEKNQVV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           +  R  G +  +S++E+         +
Sbjct: 362 LVRRDNGEKISVSMDEIETKIPSLLDD 388


>gi|291294868|ref|YP_003506266.1| prolyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290469827|gb|ADD27246.1| prolyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 477

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/457 (16%), Positives = 152/457 (33%), Gaps = 84/457 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     E    A++  +  +  T ++           P G    +N+   +     
Sbjct: 10  QSQDFNEWYNEVVLKADLVDYGPVRGTMVVK----------PYGYAIWENIQRELDRMFK 59

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P     + L  E+   + +  E+  +     +  ++ +   PT E ++  +
Sbjct: 60  ETGHQNAYFPLFIPISFLQKEAEHVEGFAPELAVVTQAGGETLEEPLAVRPTSETIIGHM 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYN 175
           +   I++YR+LP    Q     R E       +R++ FL    + +    T   ++    
Sbjct: 120 WAKWIRTYRDLPQLLNQWNSVVRWE-------LRTKLFLRTTEFLWQEGHTAHATQEEAE 172

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       ++  +                                           IP  
Sbjct: 173 EEARRMAGVYATV-------------------------------------LRDWCAIPGW 195

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +       V   +                          + ++     Y G  ++
Sbjct: 196 EGPKTESEKFAGAVYSISYE------------------AMMRDGKALQSCTSHYLGQNFA 237

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  D ++ YV   S+G    RVV A++ +  D KG+I P  +AP ++ ++ I 
Sbjct: 238 RAFDIQFQDKDQQNKYVHTTSWGFT-TRVVGALVMTHGDDKGLILPPRLAPIQVVIVPIY 296

Query: 356 AHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVS 412
             +  +    A E++Y  L   G  V  DD  +   G +F   +L G PL++ +G + V 
Sbjct: 297 KAETREAVLPAAERLYQELKAAGIRVHLDDRDQYSPGYKFNEWELKGVPLRLELGPRDVE 356

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
                +  RL G +E + + E++     R    +  L
Sbjct: 357 AGTAVLASRLGG-KETLQISELLGLLPARLEQFQRDL 392


>gi|297619256|ref|YP_003707361.1| prolyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297378233|gb|ADI36388.1| prolyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 481

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 163/450 (36%), Gaps = 84/450 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  IL+     A+I           +    KG   +LP G K       I+R+  +
Sbjct: 25  FSEWYNEILET----AKIYD---------LRYPIKGCGVYLPYGFKIRRYSFEILRDLLD 71

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
            T   E   P L    L  + G     +  E+  +       +       PT E  +  +
Sbjct: 72  STKHDETLFPMLIPETLLAKEGEHIKGFEDEVFWVTHGGKNELDVRLALRPTSETAIYYM 131

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSYNK 176
            +  +K + +LPF  YQ    FR E +    ++R RE     +A++   T    K     
Sbjct: 132 MKQWLKVHTDLPFKIYQTVNTFRYETKHTRPLIRLREIMTFNEAHTAHST----KEECEA 187

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                + ++           A S P                   V  SK       P   
Sbjct: 188 QVKEGMYVYSSF------FEALSIP-------------------VLISKRPEWDKFPG-- 220

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A  +  ++    D          + +++G +   G  ++ 
Sbjct: 221 --------------------AEYTTAYDTIYPDG---------KTMQIGTVHNLGQHFAT 251

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                F+ ADG+  Y     YGI + RV+A++I    D  G++ P  VAP +I++I +  
Sbjct: 252 TFDLEFETADGEKDYAYQTCYGI-SDRVIASIIAIHGDKNGLLIPPKVAPVQIAMIPLLF 310

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K  ++   +   +IY +L K    +  D    + G +F   +L G PL++ +G + + + 
Sbjct: 311 KGKEEKVLEKANEIYDKLKKF-VRIELDTRDIRPGRKFNDWELKGVPLRIELGPRDLENG 369

Query: 415 KVEIKHRLTGIREDMSLEEV-INYASHRFS 443
           KV I  R    + D+++E++   Y +    
Sbjct: 370 KVMIFRRDKNEKFDIAIEDLTAEYLAELME 399


>gi|297191796|ref|ZP_06909194.1| prolyl-tRNA synthetase 2 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721687|gb|EDY65595.1| prolyl-tRNA synthetase 2 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 470

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 165/453 (36%), Gaps = 78/453 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F    Q+    AE+A +  +  T +I           P G    + +   +     
Sbjct: 10  RSEDFPRWYQDLINKAELADNGPVRGTMVIR----------PYGYGLWERMQQEMDARIK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             GA     P       L  E+   + +  E+  +        ++ ++  PT E ++ D 
Sbjct: 60  AAGAQNAYFPLFIPQSYLTREAEHVEGFAPELAVVTHGGGKELEEPVVVRPTSETIINDY 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++SYR+LP    Q     R ELRPR   +R+ EFL ++ ++          +Y   
Sbjct: 120 FSKWVQSYRDLPLLINQWANVVRWELRPRV-FLRTTEFLWQEGHTAHA-------TYEDA 171

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R                  I  D+  +F+V    G   V   K   +    + NT
Sbjct: 172 RDYAAR------------------IHRDVYADFMVNV-LGIDVVLGRKTPRERFAGAINT 212

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +                                      + +++G     GT ++  
Sbjct: 213 LTLE--------------------------------GMMGDGKALQMGTSHELGTNFAKA 240

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            + ++   DG+   V   S+G+ + R+V  +I S  D  G+  P  +A  ++ ++ IK  
Sbjct: 241 FNTSYLSKDGQQELVWQTSWGV-STRMVGGLIMSHGDDNGLRVPPRLAAVQVVVMAIKGD 299

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           + V +    ++   L+  G  V  DD  +   G +    +L G P+++ +G + +     
Sbjct: 300 EAVAK--VHEVGRLLTAAGLRVHVDDRVDTPFGRRAVDWELKGVPVRIEIGPRDLEAGTA 357

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R+ G +E +SL+ +         +++ +L
Sbjct: 358 MLARRIPGGKEPVSLDSLAALLPKILEDDQALL 390


>gi|195441810|ref|XP_002068665.1| GK18335 [Drosophila willistoni]
 gi|298206800|ref|YP_003714979.1| prolyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849432|gb|EAP87300.1| prolyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|194164750|gb|EDW79651.1| GK18335 [Drosophila willistoni]
          Length = 492

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 161/452 (35%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A + +    TG      P      L+ 
Sbjct: 17  NELVVQADLAENSAVRGCMVIKPYGYAIWEKMQAQLDKRFKETGHQNAYFPLFVPKSLFE 76

Query: 82  -ESGRYDSYGKEMLRLA------DRN-------------DKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +       D N             ++ ++  PT E ++ + ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDENNPGKLIVDPEAKLEEELVVRPTSEAIIWNTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R FL    + +                  
Sbjct: 137 IQSYRDLPLLINQWANVVRWE-------MRTRLFLRTAEFLWQ----------------- 172

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                      E      T E  +  ++   +            
Sbjct: 173 ---------------------------EGHTAHATREEALAETEQMNNIYAEFVENFMAI 205

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +   +  E      A  +      + D          + ++ G   + G  ++      
Sbjct: 206 PVIKGAKTESERFAGAVETYCIEALMQDG---------KALQAGTSHFLGQNFAEAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++ A+I +  D KG++ P ++AP ++ ++ I  +D+  
Sbjct: 257 FTSKEGKQEYVWASSWGV-STRLMGALIMTHSDDKGLVLPPNLAPIQVVIVPIYRNDEQF 315

Query: 362 RDACEK---IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               E+   +   L  VG  V +D     + G +FA  +L G PL++ +G K + +  VE
Sbjct: 316 NAISEEAKLLTEELRAVGISVKFDGRDTHKPGWKFAQYELQGVPLRIAIGPKDLENGTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E +  E+V+  A    +  +  L
Sbjct: 376 LARRDTLTKEFVKREDVVAKAKGLMTEIQDTL 407


>gi|294645076|ref|ZP_06722802.1| proline--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|292639582|gb|EFF57874.1| proline--tRNA ligase [Bacteroides ovatus SD CC 2a]
          Length = 447

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 162/420 (38%), Gaps = 84/420 (20%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------- 98
           +   + +    TG +    P L        E+   + + KE   +               
Sbjct: 1   MQRQLDDMFKETGHVNAYFPLLIPKSFLSREAEHVEGFAKECAVVTHYRLKNAEDGSGVV 60

Query: 99  -----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
                + ++ +I  PT E ++ + +++ I+SYR+LP    Q    FR E+R R   +R+ 
Sbjct: 61  VDPAAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTRL-FLRTA 119

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EFL ++ ++   T E ++    +M    L ++     K + +    G             
Sbjct: 120 EFLWQEGHTAHATREEAEEEAIRM----LNVYGEFAEKYMAVPVVKG------------- 162

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                             + S N  F   +   +I        A                
Sbjct: 163 ------------------VKSANERFAGALDTYTIEAMMQDGKA---------------- 188

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I +  
Sbjct: 189 --------LQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHS 239

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDD-MGEQIG 389
           D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V +D+   ++ G
Sbjct: 240 DDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPG 299

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y  +     +  +
Sbjct: 300 FKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYVQNLLEEMQANI 359


>gi|320528402|ref|ZP_08029564.1| prolyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131316|gb|EFW23884.1| prolyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 561

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/219 (42%), Positives = 134/219 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    +   ++EN +D +  S  L++R GMI + S G+Y  LP+G + L  + AIIR+E
Sbjct: 1   MRLKNSYFFTIRENAKDEDSVSSNLLVRAGMIKKSSAGVYMMLPMGNRVLSKIYAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+S+P+L   +++V SGR   +GK M  L DR     + GPTHEE+     + 
Sbjct: 61  MNKIDCQELSMPSLIPEEVYVSSGRRAGFGKGMFSLEDRKGVPYVLGPTHEELFAMAAKM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF+ YQIQ KFRDE RPR+G++R REF MKD+Y+FD    G   SY K F +
Sbjct: 121 QIRSYKDMPFSLYQIQTKFRDEPRPRYGLIRVREFTMKDSYTFDKDEAGLDVSYAKQFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           Y  I +RL L    +RA++G +GG LS EF  +   GE 
Sbjct: 181 YKNIMNRLHLDYRIVRADTGVMGGLLSEEFQAITPLGED 219



 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 4/201 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSAT 301
              + V Q         D+ N +  D  P  +     A GIEVG+ F  GTKYS  +   
Sbjct: 363 YHYTGVNQRDFTLTGHGDLRNIQEGDKNPNGEGVVHFAHGIEVGNTFKLGTKYSKALDLQ 422

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   + +  YV MGSYGIG  R +AA+ E + D  GI WP  +APF+++++ I   D+  
Sbjct: 423 YLDQNNQLQYVWMGSYGIGPARAMAALAEQNADENGINWPKDLAPFQVAVVIISMKDEEQ 482

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +++  L   G +V  D+  E+ G +F   +L+G P ++ VG + V+D KVE+K R
Sbjct: 483 VRIGNELHDELQAQGIEVVLDNRDERPGVKFKDMELIGIPFRITVG-RGVADGKVELKSR 541

Query: 422 LTGIREDMSLEEVINYASHRF 442
            TG   ++ + E I+      
Sbjct: 542 -TGESMEVPVTEAIDKLKELL 561


>gi|284931186|gb|ADC31124.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 573

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 151/445 (33%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L I++E   RD    +  L L T        G+  WLP GQ     +   +   Q +
Sbjct: 161 QDYLEIIEEQKQRDHRRINKILELFT-FNQLAGPGMPIWLPNGQIVRQLIGDYVHSVQKK 219

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G + ++ P L + DL+ +SG Y+ Y K+M   LA  +   M+  P        ++ +  
Sbjct: 220 FGFMAVNTPILGNVDLYKKSGHYNHYAKDMFPELALLDGDKMMLRPMTCPHHCLVYLNKP 279

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++Y +LP    +  L  R E      G+ R R   + D + F    +  K      +   
Sbjct: 280 RNYYDLPMRLSEDALLHRYEASGGLTGLERVRAMTLLDNHIF-CRLDQIKTEILNAYQVI 338

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +     LK   +                 L D  + Q F   + M     ++  D   
Sbjct: 339 KEVIGTFNLKFHRIDLS--------------LHDPNDKQSFIDNEQMWARSENQLEDALK 384

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP---- 297
            + L    +   A +                  K    + I V  I      +SLP    
Sbjct: 385 DLGLEYTKQVGEAAFYGPKIDFQV---------KTALNKIITVSTI---QLDFSLPSEEK 432

Query: 298 MSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +K  D   +  V +    IG      A +     G   +W   +AP +  +I +  
Sbjct: 433 FDIKYKTKDNTYEQGVIIHLGIIGTYERFVATLLEQTKGALDLW---LAPKQAVIIPVN- 488

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SK 415
            + V  + C ++  +L      V  D   E++  +     +   P+Q+IVG   + +   
Sbjct: 489 -NSVHLEGCNQLLEKLLAKDLRVTVDSRDERLNKKIRDHQVNKIPVQIIVGDNELKNPDL 547

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           +  +         + L + I     
Sbjct: 548 ITYRLYGQEDSNQLELTKFIELFKK 572


>gi|28948883|pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Cysteine
           Sulfamoyl Adenylate
 gi|28948884|pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus
 gi|28948885|pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Proline
           Sulfamoyl Adenylate
 gi|28948886|pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Alanine
           Sulfamoyl Adenylate
          Length = 501

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 157/454 (34%), Gaps = 81/454 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    AEI                KG++ W+P G     N   I+R   +
Sbjct: 40  FSEWFHNILEE----AEIIDQ---------RYPVKGMHVWMPHGFMIRKNTLKILRRILD 86

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
                E+  P L    +L  E+     +  E+  +      +  + +   PT E VM  +
Sbjct: 87  -RDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 145

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++S+ +LP  FYQ+   FR E +    ++R RE                       
Sbjct: 146 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITT-------------------- 185

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        +H     A   E QV       +  +     
Sbjct: 186 --------------------------FKEAHTIHATASEAEEQV-------ERAVEIYKE 212

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F+ +     I  +        S+                  + +++G +   G  ++  
Sbjct: 213 FFNSLGIPYLITRRPPWDKFPGSEYTVAFD------TLMPDGKTLQIGTVHNLGQTFART 266

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--K 355
               F+  +G   YV    YG+ + RV+A+VI    D  G+  P  VA  ++ ++ I  K
Sbjct: 267 FEIKFETPEGDHEYVHQTCYGL-SDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFK 325

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +AC ++ +RL   G  V  DD   + G ++   ++ G PL+V +G + +    
Sbjct: 326 KAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGA 385

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             I  R TG +    L+ +         +    L
Sbjct: 386 AVISRRDTGEKVTADLQGIEETLRELMKDILENL 419


>gi|317497213|ref|ZP_07955537.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895458|gb|EFV17616.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 478

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 158/445 (35%), Gaps = 77/445 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + AE+A +             +G     P G    +N+  ++  +   TG 
Sbjct: 18  FAQWYTDVVKKAELADYS----------SVRGCMILRPNGYAIWENIQKVLDAKFKETGV 67

Query: 67  IEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSH 121
             +++P      L   E    + +  E+  +    DK +       PT E +  D +   
Sbjct: 68  ENVAMPMFIPESLLKKEEDHVEGFAPEVAWVTHGGDKELQERLCVRPTSETLFCDFYSKI 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+S+R+LP  + Q     R E +     +R+ EF  ++ ++   T E ++    +M    
Sbjct: 128 IQSHRDLPKLYNQWVSVVRWE-KTTRPFLRTSEFFWQEGHTAHATEEEAEARTVQM---- 182

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++     + + +    G                 E + F                   
Sbjct: 183 LNMYADFCEQYLAIPVVKG--------------QKTEKEKFAGAHS-------------- 214

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                         Y   + +H+               + ++ G    FG  ++      
Sbjct: 215 -------------TYTIEALMHD--------------GKALQSGTSHNFGDGFAKAFDIQ 247

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   D K  YV   S+G+ + R++ A+I    D  G++ P  +AP +  ++ I    +  
Sbjct: 248 YTDKDNKLQYVHQTSWGM-STRIIGAIIMVHGDDSGLVLPPRIAPVQTMIVPIMQKKEGV 306

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E+I  RL+     V  DD  +  G +F+  ++ G P ++ +G K +  ++  I  R
Sbjct: 307 LDKAEEIRKRLASS-YKVKVDDSDKSPGWKFSEQEVRGIPTRIEIGPKDIEKNQAVIVRR 365

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            T  +  +SL+E+           +
Sbjct: 366 DTREKIIVSLDEIETKLGEVLEQMQ 390


>gi|310659541|ref|YP_003937262.1| prolyl-tRNA synthetase 2 [Clostridium sticklandii DSM 519]
 gi|13633967|sp|Q9L4Q8|SYP_CLOSD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6899998|emb|CAB71307.1| prolyl tRNA synthetase [Clostridium sticklandii]
 gi|308826319|emb|CBH22357.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Clostridium sticklandii]
          Length = 481

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 136/412 (33%), Gaps = 67/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    +N+ A +      TG      P L    L   E    + +  E+  
Sbjct: 39  KGFMVIKPYGYAIWENIQAFLDRRFKETGHQNCYFPLLIPESLLNKEKEHVEGFAPEVAW 98

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     ++  + +   PT E ++  ++   + SYR LP+ + Q     R E         
Sbjct: 99  VTHGGSEKLAERLCVRPTSETIICSMYSKWLTSYRELPYLYNQWCSVVRWEKS------- 151

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL    + +                                             E  
Sbjct: 152 TRPFLRTSEFLWQ--------------------------------------------EGH 167

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L +T E     +   +         D   I  ++           A +    E L    
Sbjct: 168 TLHETAEEAQAETLQML-AIYKEMAEDLLAIPVVDGRKSDRERFAGAAATYTIEAL---- 222

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G        ++     TF+G  G+  Y    S+G  + R++  +I  
Sbjct: 223 ----MHDGKALQSGTSHNLAQHFTKAFDITFQGRTGELEYPHHTSWG-ASTRLIGGIIMV 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGS 390
             D +G++ P  VAP ++ +I I  + +   D   +I   L   G  V   DD     G 
Sbjct: 278 HGDNRGLVLPPRVAPTQVVIIPIAQNKEGVLDKAYEIKKELEAKGIRVTLDDDTNYSPGW 337

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +F   ++ G PL++ +G + + ++   I  R T  ++  SL+ + +   +  
Sbjct: 338 KFNQYEMKGVPLRLEIGPRDIENNVAMIARRDTLSKDSYSLDNIGDTVKNLL 389


>gi|78778894|ref|YP_397006.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
 gi|114152228|sp|Q31C25|SYP_PROM9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78712393|gb|ABB49570.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 600

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 4/229 (1%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I +   GIY+++P+  K ++ ++ II  
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVYSGIYAYMPIMLKVIEKISKIIEI 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  A+LW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPANLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K
Sbjct: 121 IASEIINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++
Sbjct: 181 VGNAYENIFKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTQ 229



 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 6/246 (2%)

Query: 200 GPIGGDLSHEFIVLADTGETQ----VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           G IG DL +E I  +   +      +  S   +   I   N      +            
Sbjct: 347 GFIGPDLDNETIKASSNWDKTWTRIIDHSASTLSKFISGANKVNFHKVFQEFSFTSKDYL 406

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                +             +    +GIE+GHIF  G KYS  ++A F   DG    + MG
Sbjct: 407 IEDIRNAKKGDKIKINDNEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGHLKNLWMG 466

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+  A IE +HD KGI WP  ++PF++ +I     DQ+ RD  E+IY      
Sbjct: 467 CYGIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDQIQRDLTEQIYNNFLVN 526

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DV  DD  ++ G +F  A+L+G P Q+I+G +   +++VE+  R    +  +S  +++
Sbjct: 527 KIDVLLDDREDRAGVKFKDAELIGIPFQIIIG-RDSINNEVELICRTNNTKFKISAHKLL 585

Query: 436 N-YASH 440
             + S 
Sbjct: 586 ETFISE 591


>gi|86141210|ref|ZP_01059756.1| prolyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85831769|gb|EAQ50224.1| prolyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 490

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 152/450 (33%), Gaps = 84/450 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+++  +      +G     P G    + + A +      TG      P       + 
Sbjct: 17  NELVVKADLAENSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHENAYFPLFIPKSYFS 76

Query: 81  VESGRYDSYGKEM-----LRLADRND------------KAMIYGPTHEEVMTDIFRSHIK 123
            E+   D + KE       RL +  D            + +I  PT E ++ D +R  I+
Sbjct: 77  KEASHVDGFAKECAVVTHYRLKNDEDGSIIVDPEAKLEEELIVRPTSETIIWDTYRKWIQ 136

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    Q     R E       MR+R FL    + +                    
Sbjct: 137 SYRDLPIKVNQWANVVRWE-------MRTRLFLRTAEFLWQE------------------ 171

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                                         A   + +     + M          F  + 
Sbjct: 172 ---------------------------GHTAHATKDEAIAEAEQMMRVYADFAEHFMALP 204

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            +     +      A      E L            + ++ G   + G  ++      F 
Sbjct: 205 VVRGTKTESERFAGALETYCIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVKFA 256

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV--- 360
             +G   +V   S+G+ + R++ A++ +  D  G++ P  +AP ++ ++ I   ++    
Sbjct: 257 TKEGGQEHVWATSWGV-STRLMGALVMTHSDDNGLVLPPKLAPIQVVIVPIYKGEEQLDS 315

Query: 361 CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                +++   L  +G  V +DD    + G +F   +L G PL++ +G + +    VE+ 
Sbjct: 316 ISQVAKELKRELQLLGISVKFDDRDTHKPGWKFNEYELKGVPLRIAIGPRDLEKRTVELA 375

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            R T  +E +S +++++         +  L
Sbjct: 376 RRDTLTKETVSKDDIVSRVQDLLVEMQKSL 405


>gi|323693976|ref|ZP_08108161.1| prolyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323501976|gb|EGB17853.1| prolyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 477

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 148/423 (34%), Gaps = 69/423 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S KG     P G    +N+   +      TG   + +P      L   E 
Sbjct: 26  VKKAELIDYSSVKGCMVIKPAGYAIWENIQNELDRRFKETGVQNVYMPMFIPESLLEKEK 85

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     +   + M   PT E +  D +   I+SYR+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTMGGLEPLQERMCVRPTSETLFCDFYARDIQSYRDLPRLYNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +RSREFL ++ ++   T E ++     M   Y             + A  
Sbjct: 146 RWE-KTTRPFLRSREFLWQEGHTAHATAEQAEERTELMLNLYADFCEE-------VLAMP 197

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
              G     E    A+                            +              +
Sbjct: 198 VVRGKKTDKEKFAGAEA---------------------------TYTIEALMHDGKALQS 230

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
              HN     +     +   +  ++ ++                            S+G+
Sbjct: 231 GTSHNFGDGFAKAFEIQYLDKDNQLKYVHQ-------------------------TSWGM 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ A+I    D  G++ P  +AP ++ ++ I+ + +   D   ++   LS  G  V
Sbjct: 266 -TTRLIGAIIMVHGDDNGLVLPPRIAPVQVMIVPIQQNKEGVLDKAYELKEVLS--GFKV 322

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +F+ +++ G P++V +G + +++++  +  R T  +  +SL+E+    +
Sbjct: 323 KVDDSDKSPGWKFSESEMRGIPVRVEIGPRDLAENQAVLVRRDTHEKITVSLDEINEKVA 382

Query: 440 HRF 442
              
Sbjct: 383 ELL 385


>gi|160934880|ref|ZP_02082266.1| hypothetical protein CLOLEP_03755 [Clostridium leptum DSM 753]
 gi|156866333|gb|EDO59705.1| hypothetical protein CLOLEP_03755 [Clostridium leptum DSM 753]
          Length = 478

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 153/449 (34%), Gaps = 77/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             +G     P G    +N+  I+  E  
Sbjct: 14  MEEDFAKWYTDIVKKAELMDYS----------SVRGCMIIEPYGWAIWENIRDILDHEFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   +++P      L   E    + +  E+  +    ++ +       PT E +  D 
Sbjct: 64  ELGHENVAMPLFIPESLLQKEKDHVEGFAPEVAWVTHGGEEELPERLCVRPTSETLFCDH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +++ I S+R+LP  + Q     R E         +R FL      +         +  + 
Sbjct: 124 YKNIIHSWRDLPKLYNQWCSVVRWEKT-------TRPFLR-SVEFYWQEGHTMHATAQEA 175

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R+ +        + A+                       FC K      +    T
Sbjct: 176 MEETERMLN--------VYAD-----------------------FCEKQLAIPVVKGRKT 204

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +      +                                + ++ G   YFG  ++  
Sbjct: 205 KKEQFAGAEATYTIEAL---------------------MHDGKALQSGTSHYFGDGFARA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+   + K  Y    S+G+ + R++  +I +  D  G++ P +VAP ++ +I I  H
Sbjct: 244 FEITYTDKENKPQYPHQTSWGM-STRIIGGIIMTHGDDNGLVLPPAVAPIQVMIIPIAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  E++ ARL K+ C V  DD  +  G +F+  ++ G PL++ +G K +  ++  
Sbjct: 303 KPGVLEKAEELRARLKKI-CRVRMDDSEQSPGWKFSQYEMKGVPLRLEIGPKDIEKNQCV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +  R    +  +SL+E+           R
Sbjct: 362 LVRRDNREKTFVSLDELEAKIPELLEAVR 390


>gi|326793278|ref|YP_004311099.1| prolyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326544042|gb|ADZ85901.1| prolyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 568

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/230 (40%), Positives = 132/230 (57%), Gaps = 1/230 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P +A   SH  +LR G + Q + GIYS LP  ++ +  +  IIR+E
Sbjct: 1   MLMSKLLGERFKEKPGEATSISHIYLLRGGYVRQVTNGIYSLLPPAKRVVSKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+  P     DLW ESGR+D+ G E++R  DR  K M+ G THEE    + R+
Sbjct: 61  MDAIDGQEVLFPVALPGDLWRESGRFDAVGSELVRFKDRGGKDMVLGMTHEEAAVHLART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY N PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E  +  Y +   +
Sbjct: 121 EAKSYNNYPFMIYQIQTKFRDEPRARGGLIRVREFTMKDAYSFHTSQEDLEAYYEQCLQA 180

Query: 181 YLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           Y RIF R G+ +++ +++++G +GG ++HEF++L D GE  +        
Sbjct: 181 YHRIFARAGVPETVCVQSDTGMMGGKVAHEFMLLTDIGEDTIIICDSCDY 230



 Score =  189 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 1/180 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K    RG+EVG+IF  GT+YS  M  T+  +DGK     MG YGIG  R+
Sbjct: 388 EGQECPCCHGKLQFKRGVEVGNIFQLGTRYSESMGMTYIDSDGKAKTPIMGCYGIGVGRL 447

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A +IE+ HD  G IWP SVAP+++ +  +K+          +IY +LS    +V  DD 
Sbjct: 448 LACIIEARHDEWGPIWPMSVAPWQVHICVLKSKKTDMDAIGNEIYNKLSSK-YEVIMDDR 506

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G QFA ADLLG P++V+VG K + + KVE+  R   +++ + L +V    +   + 
Sbjct: 507 NVGAGVQFADADLLGIPVRVVVGEKNLKEGKVELMTRDKSVKKLVDLGDVEKEVAALIAE 566


>gi|330995811|ref|ZP_08319708.1| proline--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329574541|gb|EGG56106.1| proline--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 493

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 164/448 (36%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+++  +  Q   +G     P G    + +  ++ ++   TG      P L       
Sbjct: 20  NELVVKADLAEQSDVRGCMVIKPYGYAIWEKMQRVLDDKFKETGVQNAYFPLLIPKSFLS 79

Query: 81  VESGRYDSYGKEM-----LRLADRND-------------KAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE       RL    D             + +I  PT E ++ + +++ I
Sbjct: 80  KEAEHVEGFAKECAVVTHYRLKTNEDKTGVVVDPAAKLEEELIIRPTSETIIWNTYKNWI 139

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E       MR+R FL    + +                   
Sbjct: 140 QSYRDLPILCNQWCNVMRWE-------MRTRLFLRTAEFLWQ------------------ 174

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                    H      +  E +                 DF + 
Sbjct: 175 -----------------------EGHTAHATREEAEERAKQMLKVYA--------DFAEQ 203

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +V+   +     +   +    +++ ++     + ++ G   + G  +    +  F
Sbjct: 204 YMAVPVVQGVKSETERFAGALDTYTIEAMMQDG----KALQSGTSHFLGQNFGKAFNVQF 259

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--- 359
              D K  Y    S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  + +   
Sbjct: 260 INKDNKLEYAWATSWGV-STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYKNAEQLK 318

Query: 360 VCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +  E I ARL  +G  V +D+   ++ G +FA  +L G P+++++G + + ++ VE+
Sbjct: 319 AIDEKVEGIVARLRALGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTVEV 378

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E  + + + +Y        +
Sbjct: 379 MRRDTLEKETRTCDGIEDYVKTLLDEIQ 406


>gi|331092516|ref|ZP_08341338.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400737|gb|EGG80340.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 480

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 141/412 (34%), Gaps = 66/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   +LP G    + + A + +    TG   + +P L   +L   E    + +  E+  
Sbjct: 38  KGCMVYLPNGYAIWEKIQADLDKRFKETGVENVYLPMLIPENLLQKEKDHIEGFAPEVAW 97

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    ++     M   PT E +  D +   ++SYR+LP  + Q     R E +     +R
Sbjct: 98  VTHGGNEPLQERMCIRPTSETLFCDHWSKTVQSYRDLPKIWNQWCSVLRWE-KTTRPFLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SR              E      + +  +Y                              
Sbjct: 157 SR--------------EFLWQEGHTIHATYE----------------------------- 173

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  E  +   K + DF   S           +S              +         
Sbjct: 174 ---EAEERTILMQKIYKDFIEESLAIPLVAGKKTDSEKFAGAEDTYTVEAL--------- 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++     +FG+ ++      +   + + H V   S+G+   R++ A+I  
Sbjct: 222 ----MHDGKALQAATSHFFGSGFADAFDIKYLDKNNELHSVYETSWGLT-TRMIGAIIMV 276

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  +AP +  +I I  H +   +   ++   L   G  V  D   +  G +
Sbjct: 277 HGDDSGLVLPPRIAPVQTRVIPIAQHKEGVLEKATELMNTLKAAGYAVNMDSSDKSPGWK 336

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F+  ++ G P ++ +G K + +++V +  R T  +  +SL+E+         
Sbjct: 337 FSEQEMQGIPTRIEIGPKDIENNQVVVVRRDTREKIVVSLDEITTKLGEILE 388


>gi|308160139|gb|EFO62643.1| Threonyl-tRNA synthetase [Giardia lamblia P15]
          Length = 695

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 160/462 (34%), Gaps = 51/462 (11%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L    E   +A+   H+ + +     M H+++ G   ++  G +    + A IRE 
Sbjct: 262 SKDQLDKHIELLEEAKRRDHRNLAKEMDLFMTHKYAPGAPMFMNNGTRIYRKLEAFIREL 321

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
            +     E+  PT  + DLW  SG    Y + M  L   ++ D      P +      ++
Sbjct: 322 LHEFDYEEVMTPTFLNTDLWGISGHLQHYKENMFLLERKEKTDPQYGLKPMNCPCHCLLY 381

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++   S + LP    +  +  R+EL     G+ R   F   DA+ F  T +  +     +
Sbjct: 382 KNQHHSVQELPIRMAEFGVVHRNELSGALSGLTRVVRFEQDDAHIF-CTVDQIEQEMTGL 440

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R++   G+    +     P     S E    A+    +V  +        P +  
Sbjct: 441 IEFIKRVYTPFGIDF-ALSLSLRPEKKMGSDELWDRAEGTLRKVLTNTGLDFKENPGDG- 498

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  L D+L    +     ++    F   +K    
Sbjct: 499 -------------------AFYGPKIDVHLTDALGRQHQCGTIQLD----FNLPSKDRFD 535

Query: 298 MSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +  +          ++H V +    +G++    A++  +  G+   W   ++P +I +I 
Sbjct: 536 LLYSVYDEKTGSVKQEHPVMIHRAILGSVERFMAILIENTGGRFPFW---ISPRQIMVIP 592

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +   D       + +  R    G  V  D   E++  + AVA    +   ++VG++    
Sbjct: 593 LHGGD--IIAYAKTVRERYHSKGYFVDLDVSSEKMEKKIAVAWNKKYNFIMVVGAQEKGT 650

Query: 414 SKVEIKHR----------LTGIREDMSLEEVINYASHRFSNN 445
             V +  R              R+ ++LEE     +   ++ 
Sbjct: 651 CSVALSGRTLSAYIGEKDNQRARKVLTLEETDTLLTELLNSR 692


>gi|83814638|ref|YP_446639.1| prolyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83756032|gb|ABC44145.1| prolyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 527

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 164/461 (35%), Gaps = 86/461 (18%)

Query: 14  NPRDAEIAS-HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            PRD + +  ++ ++R G + ++S   G     P G    +N+   + +    TG     
Sbjct: 43  TPRDEDYSQWYQDVVRNGQLAENSPARGCMIIKPNGMALWENMRDQLDQMFKDTGHQNYY 102

Query: 71  VPTLQSADLWV-ESGRYDSYGKEMLRLAD-----------------RNDKAMIYGPTHEE 112
            P          E+   + + KE   +                      +  I  PT E 
Sbjct: 103 FPLFIPERYMEREAEHVEGFAKECAVVTHSRLTQDEEGDLVPDPESELGENYIVRPTSET 162

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           ++ D +   I+SYR+LP  + Q     R E+RPR   +R+ EFL ++ ++   T   +  
Sbjct: 163 IIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL-FLRTAEFLWQEGHTAHATETEAVE 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +M    L ++                                    F  +      +
Sbjct: 222 EAERM----LDVYTT----------------------------------FAEEYMAMPVL 243

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
               T+ +                                       + ++ G   + G 
Sbjct: 244 QGRKTESERFPGAVDTYCIEAM---------------------MQDGKALQAGTSHFLGQ 282

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++     TF   D ++ YV   S+G+ + R++  +I +  D +G++ P  +AP ++ ++
Sbjct: 283 NFAKAFDCTFTNEDNEEEYVWATSWGV-STRLIGGLIMTHSDDQGLVLPPKLAPHQVVIV 341

Query: 353 NIKAHDQV---CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGS 408
            +   D       + CE++  RL   G  V  D +  +  G +F+  +L G PL++ +G 
Sbjct: 342 PLFFDDDQEGPVMETCERLQERLEDHGIRVKMDQNHTQSPGWRFSEHELRGVPLRLAIGP 401

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + +  VE+  R T  +E +  + +    S    + +  L
Sbjct: 402 RDLENDNVEMARRDTQEKEVVPQDGIAERVSDTLDDIQHAL 442


>gi|325954344|ref|YP_004238004.1| prolyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323436962|gb|ADX67426.1| Prolyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 492

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 156/452 (34%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A + +    TG      P       + 
Sbjct: 16  NELVVKANLAENSGVRGCMVIKPYGYAIWEKIQAELDKRFKETGHQNAYFPIFVPRSYFE 75

Query: 82  ESG--------------RYDSYGKE------MLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                             Y     E      M+    + ++ +I  PT E ++   +++ 
Sbjct: 76  AEEKNAEGFAKECAVVTHYRLKNDESTPGKLMVDPEAKLEEELIVRPTSEAIIWSTYKNW 135

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R FL    + +                  
Sbjct: 136 IQSYRDLPILINQWANVVRWE-------MRTRLFLRTTEFLWQ----------------- 171

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                      E      T E  +  S+  +D            
Sbjct: 172 ---------------------------EGHTAHATKEEAISESRQMLDVYTEVVENHMAI 204

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +             A  +      + D          + ++ G   + G  ++      
Sbjct: 205 PVVRGCKTPSERFAGAEETYTIEAMMQDG---------KALQAGTSHFLGQNFAKAFDVK 255

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV- 360
           F   +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++  
Sbjct: 256 FTTNEGKQDYVWATSWGV-STRLMGALIMTHSDDYGLVLPPKIAPIQVVIVPIFRSEEQL 314

Query: 361 --CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   +I   L  +G  V +DD  + + G +FA  +L G P+++ +G K + +++VE
Sbjct: 315 IQVSEVANRIKNELHSIGISVKFDDDEKTKPGWKFAEYELKGVPVRIAIGPKDLENNQVE 374

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           I  R T  +  + ++ + +Y  +   + +  L
Sbjct: 375 IARRDTLEKSTIPMDGISSYVENLLVDIQENL 406


>gi|323486231|ref|ZP_08091559.1| hypothetical protein HMPREF9474_03310 [Clostridium symbiosum
           WAL-14163]
 gi|323400449|gb|EGA92819.1| hypothetical protein HMPREF9474_03310 [Clostridium symbiosum
           WAL-14163]
          Length = 483

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 148/423 (34%), Gaps = 69/423 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S KG     P G    +N+   +      TG   + +P      L   E 
Sbjct: 32  VKKAELIDYSSVKGCMVIKPAGYAIWENIQNELDRRFKETGVQNVYMPMFIPESLLEKEK 91

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     +   + M   PT E +  D +   I+SYR+LP  + Q     
Sbjct: 92  DHVEGFAPEVAWVTMGGLEPLQERMCVRPTSETLFCDFYARDIQSYRDLPRLYNQWCSVV 151

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +RSREFL ++ ++   T E ++     M   Y             + A  
Sbjct: 152 RWE-KTTRPFLRSREFLWQEGHTAHATAEQAEERTELMLNLYADFCEE-------VLAMP 203

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
              G     E    A+                            +              +
Sbjct: 204 VVRGKKTDKEKFAGAEA---------------------------TYTIEALMHDGKALQS 236

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
              HN     +     +   +  ++ ++                            S+G+
Sbjct: 237 GTSHNFGDGFAKAFEIQYLDKDNQLKYVHQ-------------------------TSWGM 271

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ A+I    D  G++ P  +AP ++ ++ I+ + +   D   ++   LS  G  V
Sbjct: 272 -TTRLIGAIIMVHGDDNGLVLPPRIAPVQVMIVPIQQNKEGVLDKAYELKEVLS--GFKV 328

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +F+ +++ G P++V +G + +++++  +  R T  +  +SL+E+    +
Sbjct: 329 KVDDSDKSPGWKFSESEMRGIPVRVEIGPRDLAENQAVLVRRDTHEKITVSLDEINEKVA 388

Query: 440 HRF 442
              
Sbjct: 389 ELL 391


>gi|254167402|ref|ZP_04874254.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623665|gb|EDY36228.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 465

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 152/427 (35%), Gaps = 71/427 (16%)

Query: 29  TGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGR 85
            G++      KG++ WLP G + + N++   R+        E+  P L    +   E+  
Sbjct: 19  AGLVDKRYPVKGMHVWLPYGWQLMRNIDEYFRKVFTEHKHQEVYFPLLIPETEFKKEAEH 78

Query: 86  YDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +     D  D  ++  PT E  M  +F   I+S+ +LP   +QI   FR 
Sbjct: 79  IEGFENEVYWVTHGGLDPLDVKLVVRPTSETAMYPMFSLWIRSHADLPLRIFQIVNVFRY 138

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R R     + + F                                      
Sbjct: 139 ETKQTRTFIRVR-----EVHFF-------------------------------------- 155

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                SH     A+  E Q+             ++         + +   +        D
Sbjct: 156 ----ESHTAHATAEESEEQI-------------KDNIEIWKKVADKLALPYVLVRKTDWD 198

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                 +    E    S R +++  I  +   +S P    +   DG   YV   ++G+ +
Sbjct: 199 KFPGAAYSIGAETIMPSGRTLQIATIHQYFQNFSKPYGIEYLKEDGTHDYVHQTTFGM-S 257

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVF 380
            R+V A++    D +G+I P  +AP ++ ++ I   + +       KI   L ++   V 
Sbjct: 258 ERLVGAIVGIHGDNRGLILPPEIAPIQVVIVPIVNKNKEGILQEARKIENELKEL-YRVH 316

Query: 381 WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD      G +F   +L G PL++ +G + +   +V +  R    +  +S +E ++   
Sbjct: 317 LDDRDNYTPGYKFYDWELKGVPLRLEIGPRDLEKGQVVLVRRDNFEKIFVSRKEYVDRIG 376

Query: 440 HRFSNNR 446
               + +
Sbjct: 377 ELLKDIQ 383


>gi|290996111|ref|XP_002680626.1| prolyl-tRNA synthetase [Naegleria gruberi]
 gi|284094247|gb|EFC47882.1| prolyl-tRNA synthetase [Naegleria gruberi]
          Length = 575

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 140/426 (32%), Gaps = 72/426 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVESGRYDSYGK 91
           +    G Y + P      + V         + G   +  P  +    L  E    + +  
Sbjct: 74  YYEVSGCYIFRPNCFYVWEKVQNFFDGHIKKLGVQNVMFPMFVTKRALETEKDHVEGFSP 133

Query: 92  EMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +        D+ +   PT E +M   +   IKS+R+LP    Q     R E +   
Sbjct: 134 EVAWVTKSGNSDLDEPIALRPTSETIMYPSYAKWIKSHRDLPLKLNQWTNVVRWEFKHAV 193

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             +RSREF  ++ +S          ++     +   ++  L L                 
Sbjct: 194 PFIRSREFYWQEGHS----------AFKNFEQAKTEVYDILELYKRT------------- 230

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            +      I  + T+ +     +                     
Sbjct: 231 ---------------YEEILAVPVIKGKKTEAEKFAGADFTTTIEAFIPTNG-------- 267

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                       R ++     + G  +S      F+  D K   V   S+G+ + R +  
Sbjct: 268 ------------RAVQAATSHHLGQNFSRMFKIEFEAEDKKSKLVYQNSWGL-STRSLGV 314

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +I    D KG++ P  VA  ++ LI +      +       + I+A+L + G  +  DD 
Sbjct: 315 MIMVHGDDKGMVLPPRVAFTQVVLIPLYFKNKDNSELETKSKTIFAQLEENGVRIKLDDR 374

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV----INYAS 439
             +  G ++   +L G PL++ +G K + +    +  R  G +  + LE++    +N   
Sbjct: 375 LEKTPGWKYNYWELRGVPLRIEIGPKDLENGVAMLCRRDNGEKWSVPLEQLTAQYVNEIL 434

Query: 440 HRFSNN 445
            +  N+
Sbjct: 435 DKIHNS 440


>gi|298245367|ref|ZP_06969173.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297552848|gb|EFH86713.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 578

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 6/237 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E   D E  +  L+ R G + Q + G+YS LPLG++ +  +  IIR E
Sbjct: 1   MRYSQLLGGTLRERAHDVESTNLDLLTRGGFVRQLTSGVYSMLPLGERVMRKLTEIIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWV---ESG---RYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
             R G  E+S+P LQ  ++W    +SG   R + YG  +  L DR ++ ++ GPTHEE+ 
Sbjct: 61  MERIGGQEVSMPVLQPREIWEARPQSGKASRAEGYGPVLFSLHDRRERELVLGPTHEEIC 120

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           T + +  I+SYR+LP   +Q+Q KFRDE R R G++R REFLMKD YSFD   EG   ++
Sbjct: 121 TLLAQEFIRSYRDLPRLVFQVQRKFRDEPRARGGLLRLREFLMKDLYSFDADEEGLNANF 180

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +  +Y RIF R GL  I + A+SG IGG  S EFI L + GE  +          
Sbjct: 181 ELVREAYCRIFARCGLDFIVVEADSGAIGGKESLEFIALTEAGEDTILRCTGCGYAA 237



 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 1/211 (0%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +   N     + ++N   +     +A  +  + E         +  + RG E+GHIF  G
Sbjct: 366 VAGANRAEHHLKNVNYPRDFRVDTWADIASAY-EGAACVRCGGRLHALRGCELGHIFKLG 424

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           T YS   +ATF  A+G+   + M SYGIG  R++A ++E  HD +G+ WP +VAP+ +SL
Sbjct: 425 TIYSDLFNATFLDAEGRTQPLIMASYGIGISRLLACIVEQQHDARGLTWPLAVAPYAVSL 484

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +    A E++YA L   G +V +DD  E  G +F  ADLLG PL+V+V  + +
Sbjct: 485 VGIDLVKEEIGRAAEQLYADLCAAGVEVLFDDRHESAGIKFNDADLLGLPLRVVVSKRSL 544

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               VE+K R +   + +SL E +N      
Sbjct: 545 KQGGVELKVRTSQESQIVSLSEALNEIQQVL 575


>gi|167765976|ref|ZP_02438029.1| hypothetical protein CLOSS21_00467 [Clostridium sp. SS2/1]
 gi|167712333|gb|EDS22912.1| hypothetical protein CLOSS21_00467 [Clostridium sp. SS2/1]
 gi|291558770|emb|CBL37570.1| prolyl-tRNA synthetase, family I [butyrate-producing bacterium
           SSC/2]
          Length = 478

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 157/445 (35%), Gaps = 77/445 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + AE+A +             +G     P G    +N+  ++  +   TG 
Sbjct: 18  FAQWYTDVVKKAELADYS----------SVRGCMILRPNGYAIWENIQKVLDAKFKETGV 67

Query: 67  IEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSH 121
             +++P      L   E    + +  E+  +    DK +       PT E +  D +   
Sbjct: 68  ENVAMPMFIPESLLKKEEDHVEGFAPEVAWVTHGGDKELQERLCVRPTSETLFCDFYSKI 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+S+R+LP  + Q     R E +     +R+ EF  ++ ++   T E ++    +M    
Sbjct: 128 IQSHRDLPKLYNQWVSVVRWE-KTTRPFLRTSEFFWQEGHTAHATEEEAEARTVQM---- 182

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++     + + +    G                 E + F                   
Sbjct: 183 LNMYADFCEQYLAIPVVKG--------------QKTEKEKFAGAHS-------------- 214

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                         Y   + +H+               + ++ G    FG  ++      
Sbjct: 215 -------------TYTIEALMHD--------------GKALQSGTSHNFGDGFAKAFDIQ 247

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   D K  YV   S+G+ + R++ A+I    D  G++ P  +AP +  ++ I    +  
Sbjct: 248 YTDKDNKLQYVHQTSWGM-STRIIGAIIMVHGDDSGLVLPPRIAPVQTMIVPIMQKKEGV 306

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E+I  RL      V  DD  +  G +F+  ++ G P ++ +G K +  ++  I  R
Sbjct: 307 LDKAEEIRKRLVSS-YKVKVDDSDKSPGWKFSEQEVRGIPTRIEIGPKDIEKNQAVIVRR 365

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            T  +  +SL+E+           +
Sbjct: 366 DTREKIIVSLDEIETKLGEVLEQMQ 390


>gi|315925309|ref|ZP_07921520.1| proline--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621210|gb|EFV01180.1| proline--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 482

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 147/421 (34%), Gaps = 68/421 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGR 85
           +T M+     KG     P G    +N+          TG   M  P L    +   E+  
Sbjct: 29  KTEMVDYAPVKGFMVIRPYGYAIWENIKEAFDRRFKETGHKNMYFPLLIPESMLQTEAEH 88

Query: 86  YDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +         + +   PT E ++  ++   + SYR LPF + Q     R 
Sbjct: 89  VEGFAPEVAWVTRGGGKELGERLAIRPTSETIICSMYSKWLNSYRQLPFKYNQWCNVVRW 148

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R+ EFL ++ ++   T E ++    +M   Y  +            A    
Sbjct: 149 E-KTTRPFLRTSEFLWQEGHTLHETEEEARAETMQMLNIYREVTEDF-------MAIPMV 200

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +G     E    A+              + I +   D   + S            +    
Sbjct: 201 VGQKSEKEKFAGAEAT------------YTIEALMHDGQALQS----------GTSHYLG 238

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            H  K FD                               ++   + K       S+G+ +
Sbjct: 239 QHFTKAFD------------------------------ISYLSRENKQENPYHTSWGV-S 267

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  +I    D  G++ P  +AP ++ +I + AH     +A  K+  +L KV      
Sbjct: 268 TRLIGGLIMVHGDDNGLVLPPKIAPIQVVIIPVAAHKPRVAEAAGKLTDQLGKV-FRAEL 326

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD     G +F   ++ G P+++ +G + +   +  +  R TG +  +SL+++  + +  
Sbjct: 327 DDSDNSPGWKFNQWEMKGVPIRLEIGPRDLERGECVLARRDTGEKTAVSLDDIEAHVADL 386

Query: 442 F 442
            
Sbjct: 387 L 387


>gi|76801546|ref|YP_326554.1| prolyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|114152219|sp|Q3IS99|SYP_NATPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76557411|emb|CAI48989.1| proline--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 482

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 136/414 (32%), Gaps = 69/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E    D +  E+  +
Sbjct: 37  GFIVTRPRGYALWERLQDHLDGWFKETGVQNTYFPMFIPESYLEREKDIVDGFDPEVAWV 96

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  ++ +   PT E ++T      ++SYR+LP    Q     R E        R+
Sbjct: 97  THGGHDELEERLAVRPTSESIITPFIAEWVRSYRDLPLRVNQWCSVVRWEATETKPFFRT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++   T E +          Y R++         + A  G  G    H+   
Sbjct: 157 KEFLWQEGHTAHATEESAWDETMTRLEQYERLYEE-------VMAIPGMTGRKPEHDKFP 209

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            ADT  T    +       + +  + +                                 
Sbjct: 210 GADT--TTTIEALMPDGKSVQAGTSHY--------------------------------- 234

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                             GT ++      +   D         S+G+ + R + A+I + 
Sbjct: 235 -----------------LGTSFAEAFDIEYTDEDETKQTAHTTSWGL-SWRALGALIMTH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P ++AP ++ ++ I   D  +  ++    + A L +    V  DD  E+  G
Sbjct: 277 SDDQGLVIPPALAPTQVVVVPIWQADTEEAVKEYAADLAAELDEQ-FRVELDDRDERNPG 335

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F   +L G PL++ +G   V D    + HR  G  +    E + +       
Sbjct: 336 FKFNEHELQGVPLRIEIGPNEVEDEAATLVHRPDGESDVAERESITDAVDEALE 389


>gi|288927557|ref|ZP_06421404.1| proline--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330391|gb|EFC68975.1| proline--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 493

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/464 (17%), Positives = 162/464 (34%), Gaps = 88/464 (18%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L++  + A+  S     L+++  +  Q + +G     P G    + +   +      TGA
Sbjct: 5   LKDLTKRADNYSQWFNDLVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDRMFKETGA 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L     +  E+     + KE   +                    + D+ +I  
Sbjct: 65  QNAYFPLLIPKSFFSREAEHVKGFAKECAVVTHYRLRASEDGNSVEVDPSAKLDEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E       MR+R FL           
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWE-------MRTRPFLRTS-------- 169

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                                                    EF+      E     +   
Sbjct: 170 -----------------------------------------EFLWQ----EGHTAHATRE 184

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                  +  D     + + +         + ++     L     E      + ++ G  
Sbjct: 185 EAEEEAKKMLDVYAKFAQDWMAVPVVCGVKSETERFAGALDTYTIEAMMQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKLAPI 303

Query: 348 KISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQ 403
           ++ +I I    Q  +   +K+     +L K G  V +DD   +  G ++A  +L G P++
Sbjct: 304 QVVVIPIGKAGQQMQAIADKLQPVIEQLRKAGVTVKYDDSDNRRPGFKYADYELKGIPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +++G + + ++ VEI  R T  +E +  E +  +      + + 
Sbjct: 364 IVMGGRDLENNTVEIMRRDTLEKETIGFEGLAEHIVSVLDDMQA 407


>gi|160943086|ref|ZP_02090323.1| hypothetical protein FAEPRAM212_00565 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445555|gb|EDP22558.1| hypothetical protein FAEPRAM212_00565 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104698|emb|CBL02242.1| prolyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3]
          Length = 479

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 147/429 (34%), Gaps = 68/429 (15%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ++  ++   S KG     P GQ   + +   +      TG   +++P L    L  + G 
Sbjct: 28  VKAELVEYSSVKGFIILRPYGQAIWELIQKDLDARFKATGHENVAMPVLIPESLLQKEGE 87

Query: 86  Y-DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +     D+ ++ +   PT E +  D +   + SYR LP  + Q     R
Sbjct: 88  LVNGFAPEVAWVTMGGSDKLEERLAVRPTSETMFCDHWSRVLHSYRELPMKYNQWCSVVR 147

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E         +R FL                                            
Sbjct: 148 WEKT-------TRPFLR------------------------------------------- 157

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 S EF       E                +  +         +            
Sbjct: 158 ------SREFWWQ----EGHTIHETAAEAEAETQQQLNCYADTCEQDLAIPVVKGRKTDK 207

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +           E      + ++ G   YFG K+S     TF G D + H+    S+G+ 
Sbjct: 208 EKFAGAEATYTIEAMMKDGKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV- 266

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R+V A+I +  D  G+I P ++AP ++ ++ I AH     +   ++  ++SK    V 
Sbjct: 267 STRLVGAIIMTHGDDDGLILPPAIAPIQVVVVPIAAHKPGVSEKAAELAEKISKY-ARVK 325

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD     G +FA  ++ G PL++ +G K +  ++  +  R T  +  +SL+E+      
Sbjct: 326 LDDSDNAPGWKFAQWEMKGVPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDELETAIPA 385

Query: 441 RFSNNRPVL 449
           +    R  L
Sbjct: 386 QLEALRKDL 394


>gi|123449736|ref|XP_001313584.1| threonyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
 gi|121895473|gb|EAY00655.1| threonyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
          Length = 709

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/468 (16%), Positives = 154/468 (32%), Gaps = 59/468 (12%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K FL   +   RD       L L     H+ S G   + P G      + ++IR++
Sbjct: 275 MTEHKKFL--EEAAKRDHRKLGTDLGLF--FFHEWSPGCAFFYPEGCLMYRRLMSMIRQQ 330

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------------- 101
             +   +E+  P +   DL+  SG +  Y  +M      +                    
Sbjct: 331 YLKRQFVEVITPNIFYDDLFKTSGHWAHYRDDMFHFKVDDGAPTEEELAAQDAKDPVAQK 390

Query: 102 --KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMK 158
             + M   P +      +FRS ++SY+ +P    +  +  R+E      G+ R R F+  
Sbjct: 391 AVREMGMKPMNCPGHCLVFRSKVRSYKEMPIRMAEFGVLHRNEATGALTGLTRVRRFVQD 450

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           DA+ F    +      +        ++   G++ +     +  +                
Sbjct: 451 DAHIF-ARYDQIGEEISDGLDFMTEVYGYFGME-LEFTLSTINM---------------- 492

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            + +     +     + N     +I       +     A      +  + D L    +++
Sbjct: 493 -EKYMGDLKVWE--NATNMLRQALIDNKKNFTEAPGEAAFYGPKIDVLVKDCLGRRHQLA 549

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKG 337
              ++    F    K+      T+  A+ K    V +    +G++    A+      GK 
Sbjct: 550 TIQLD----FQLPEKF----DLTYVDAELKPQRPVMIHRAVLGSLERFIAIAIEHFAGKF 601

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             W   ++P +I +I      +      ++IY  +   G  V   D  E +  +   A  
Sbjct: 602 PFW---MSPRQICIIPQNMTKEGQMKYIKEIYDMMHLEGFAVEIADGPESMNKKIVNAFK 658

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +   + +I+G + V    V  + R       + L++ +N       N 
Sbjct: 659 MSNNVALIIGDREVESRSVAARWRGENAPTVVPLDQFMNQIRDMQKNY 706


>gi|289423700|ref|ZP_06425499.1| proline--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289155950|gb|EFD04616.1| proline--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 481

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 141/416 (33%), Gaps = 67/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    + +         +TG   +  P L    L   E+   + +  E+  
Sbjct: 39  KGFMVIKPYGFALWEKIRDYADGLFKQTGHKNVYFPLLIPESLLNKEAEHVEGFAPEVAW 98

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E ++  ++   + SYR LPF + Q     R E         
Sbjct: 99  VTQGGNKVLEERLAVRPTSETIICTMYAKWLNSYRQLPFLYNQWNSVVRWEKS------- 151

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL    + +                                             E  
Sbjct: 152 TRPFLRTSEFLWQ--------------------------------------------EGH 167

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L +T E +             S   D   I  ++    +      A++    E      
Sbjct: 168 TLHET-EQEAIDETLQQLAAYKSVAEDLMAIPVIDGRKSESEKFAGASATYTIEA----- 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G   + G  ++     TF   +GK       S+GI + R++  +I  
Sbjct: 222 ---MMHDGKALQSGTSHFLGQHFTKAFDITFSDREGKLANPYHTSWGI-STRLIGGLIMV 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
             D +G++ P  +AP ++ +I I A+     +  +K+ A L   G  V  DD      G 
Sbjct: 278 HSDNRGLVLPPKMAPTQVIIIPIAANKGGVMEVVDKVAADLKAKGISVEVDDRDNYSPGY 337

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +F  A++ G P+++ +G K +  ++     R    + +MSL+ V++  +      +
Sbjct: 338 KFNDAEMKGIPVRLEIGPKDIEKNQALAFRRDELTKSEMSLDTVVDDVAALLDEIQ 393


>gi|260947818|ref|XP_002618206.1| hypothetical protein CLUG_01665 [Clavispora lusitaniae ATCC 42720]
 gi|238848078|gb|EEQ37542.1| hypothetical protein CLUG_01665 [Clavispora lusitaniae ATCC 42720]
          Length = 686

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 149/434 (34%), Gaps = 70/434 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++++  M+  +   G Y   P      + +         + G      P  + S  L  
Sbjct: 199 QVVVKGEMLDYYDVSGCYILRPNSYFVWEEIQNWFNGHIKKMGVKNSYFPMFVSSRVLEK 258

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        D+ +   PT E VM   +   I+S+R+LP    Q   
Sbjct: 259 EKDHVEGFAPEVAWVTRAGSSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWNS 318

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++  LT EG+     ++   Y  ++  L L    ++ 
Sbjct: 319 VVRWEFKHPQPFLRTREFLWQEGHTAHLTKEGAATEVEQILDLYRGVYEEL-LAVPVVK- 376

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                G   ++E    AD                            +    +        
Sbjct: 377 -----GRKTANEKFAGAD-------------------------YTTTCEGFIAATGRGIQ 406

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +  H    F  +      +  G E   +F F                         S+
Sbjct: 407 GATSHHLGTNFSKMFNISVENPEGPEKERVFAF-----------------------QNSW 443

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDA----CEKIYA 370
           G+ + RV+  +I +  D KG++ P  VA  ++ ++ +    +     RDA     +K+  
Sbjct: 444 GL-STRVIGVMIMTHSDNKGLVLPPRVAQNQVVVVPVGLTSKSTPEQRDAVNGGAKKVED 502

Query: 371 RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L+  G  V  D       G +FA  +L G PL+V  G K ++  +V    R  G +  +
Sbjct: 503 ALADAGLRVVGDYRNNYSPGWKFADWELKGVPLRVEFGPKDLAAGQVTAVRRDNGEKYVV 562

Query: 430 SLEEVINYASHRFS 443
            L ++         
Sbjct: 563 KLGDLSTRIPELLE 576


>gi|33636681|gb|AAQ23638.1| AT04665p [Drosophila melanogaster]
          Length = 335

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 101/333 (30%), Positives = 152/333 (45%), Gaps = 35/333 (10%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +Y  +  +Y R
Sbjct: 9   SYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMETYTVVNAAYDR 68

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F +L +  + + A +G +GG +SHE+  ++  GE  +                      
Sbjct: 69  LFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSSCGFA------------- 115

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                          +  V       S   +     RG+EV H F  G KYS P+ ATF 
Sbjct: 116 -------------GNSEVVKAPASCPSCNSSDLKEVRGVEVAHTFLLGDKYSKPLGATFL 162

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI  K   +   +
Sbjct: 163 NTTGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIGPKQGSKEQPE 222

Query: 364 ACEKIYARLSKVG-----CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV--SDSK 415
           A       L  VG      ++  DD  E  IG +   A  LG PL ++VG+K V     K
Sbjct: 223 AEVIENELLLNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVGAKSVRLDSPK 282

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +E+     G   ++   E +   +    + + +
Sbjct: 283 LEVHT-SKGETYELDFSETLKLVAEHSQHKKSL 314


>gi|31544379|ref|NP_852957.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|81572846|sp|Q7NBT5|SYT_MYCGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|31541223|gb|AAP56525.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930421|gb|ADC30360.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 573

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 151/445 (33%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L I++E   RD    +  L L T        G+  WLP GQ     +   +   Q +
Sbjct: 161 QDYLEIIEEQKQRDHRRINKILELFT-FNQLAGPGMPIWLPNGQIVRQLIGDYVHSVQKK 219

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G + ++ P L + DL+ +SG Y+ Y K+M   LA  +   M+  P        ++ +  
Sbjct: 220 FGFMAVNTPILGNVDLYKKSGHYNHYAKDMFPELALLDGDKMMLRPMTCPHHCLVYLNKP 279

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++Y +LP    +  L  R E      G+ R R   + D + F    +  K      +   
Sbjct: 280 RNYYDLPMRLSEDALLHRYEASGGLTGLERVRAMTLLDNHIF-CRLDQIKTEILNAYQVI 338

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +     LK   +                 L D  + Q F   + M     ++  D   
Sbjct: 339 KEVIGTFNLKFHRIDLS--------------LHDPNDKQSFIDNEQMWARSENQLEDALK 384

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP---- 297
            + L    +   A +                  K    + I V  I      +SLP    
Sbjct: 385 DLGLEYTKQVGEAAFYGPKIDFQV---------KTALNKIITVSTI---QLDFSLPSEEK 432

Query: 298 MSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +K  D   +  V +    IG      A +     G   +W   +AP +  +I +  
Sbjct: 433 FDIKYKTKDNTYEQGVIIHLGIIGTYERFVATLLEQTKGALDLW---LAPKQAVIIPVN- 488

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SK 415
            + V  + C ++  +L      V  D   E++  +     +   P+Q+I+G   + +   
Sbjct: 489 -NSVHLEGCNQLLEKLLARDLRVTVDSRDERLNKKIRDHQVNKIPVQIIIGDNELKNPDL 547

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           +  +         + L + I     
Sbjct: 548 ITYRLYGQEDSNQLELTKFIELFKK 572


>gi|167749838|ref|ZP_02421965.1| hypothetical protein EUBSIR_00806 [Eubacterium siraeum DSM 15702]
 gi|167657150|gb|EDS01280.1| hypothetical protein EUBSIR_00806 [Eubacterium siraeum DSM 15702]
          Length = 589

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 96/278 (34%), Positives = 136/278 (48%), Gaps = 1/278 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K      +E P D +I SH +M+R G I   + GI+S     ++    +  IIREE
Sbjct: 16  MKLEKLVGDRFKERPSDCQIDSHAIMVRGGYIKYMANGIFSSYAPTKRITKKIEQIIREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P +  A LW ESGRY+S G E+LR  DRN   M+ G THEE    + R 
Sbjct: 76  MDKIDGQEVQFPVVMPASLWQESGRYESIGSELLRFTDRNRMPMVLGMTHEEAAVHLVRE 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   +
Sbjct: 136 YGKSYTKYPFMIYQIQTKFRDEARPRGGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHKA 195

Query: 181 YLRIFHRLGLKSIP-MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  IF R G+  +  ++++SG +GG +SHEF++L   GE  +    +             
Sbjct: 196 YENIFRRAGVPEVISVKSDSGMMGGSISHEFMLLTPVGEDTIASCHECGFNANMEAADSI 255

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            +                    +     F   P+ K  
Sbjct: 256 IENTRDEVSAPMELVHTPNIHTIEEICDFLHTPKEKSC 293



 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 104/212 (49%)

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N +      L+   +     Y   + + +  +  +  ++    +RGIEVG+IF  GT
Sbjct: 371 CGANKEEYHYTGLDIDRDCANVEYHDFAKILDGGICPNCHKHSISISRGIEVGNIFQLGT 430

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KY+  M  T+  ++G++    MG YGIG  R+ A+V E+ HD  G IWP  +AP+++ + 
Sbjct: 431 KYTKTMGMTYLDSNGEEKTPIMGCYGIGVGRLAASVCEAHHDDYGPIWPMPIAPWQVHIC 490

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +++ D   +   +K+Y  L   G +V +DD     G  F+ ADLLG PL+V+V  + + 
Sbjct: 491 AVRSDDADVKACADKLYDTLQNAGAEVIYDDRQVSAGVMFSDADLLGVPLRVVVSPRNLK 550

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+  EI  R       + +EE  +        
Sbjct: 551 DNCCEISARDKSFSYKVPVEETADKVQELIKE 582


>gi|153816280|ref|ZP_01968948.1| hypothetical protein RUMTOR_02529 [Ruminococcus torques ATCC 27756]
 gi|317502163|ref|ZP_07960339.1| proline-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088732|ref|ZP_08337642.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846463|gb|EDK23381.1| hypothetical protein RUMTOR_02529 [Ruminococcus torques ATCC 27756]
 gi|316896439|gb|EFV18534.1| proline-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407255|gb|EGG86758.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 480

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 147/418 (35%), Gaps = 66/418 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    +N+ + + +    TG   + +P L    L   E    + +  E+  
Sbjct: 38  KGCLNYLPNGYAIWENIQSDLDKRFKDTGVENVYLPVLIPESLLQKEKDHIEGFAPEVAW 97

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +         PT E +  D++   ++SYR+LP  + Q     R E         
Sbjct: 98  VTHGGAEPLQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWEKT------- 150

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL         + E      + +  +Y     R  L     +               
Sbjct: 151 TRPFLR--------SREFLWQEGHTIHATYEEAEERTKLMWKVYK--------------- 187

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                     DF +      +V          +   +    ++L
Sbjct: 188 --------------------------DFVEENLAIPVVAGRKTESEKFAGAQDTYTIEAL 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
             + +     ++     +FG  +       +   + + H V   S+G+ + R++ A+I  
Sbjct: 222 MHDGQ----ALQSATSHFFGNSFPDAFDIKYADKNNELHSVYETSWGL-STRIIGAIIMV 276

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  +AP +  +I I  H +   D   ++   L+K G     DD  +  G +
Sbjct: 277 HGDDSGLVLPPRIAPVQTRVIPIAQHKEGVLDKANELLDALNKAGYRAKIDDSEKSPGWK 336

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           F+  ++LG P ++ +G K + + +V +  R T  +  ++++E+           +  L
Sbjct: 337 FSEQEMLGIPTRIEIGPKDIENGQVVVVRRDTREKIVVAIDEITTKLGEILETIQADL 394


>gi|295090762|emb|CBK76869.1| prolyl-tRNA synthetase, family I [Clostridium cf. saccharolyticum
           K10]
          Length = 477

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 152/441 (34%), Gaps = 78/441 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + AE+  +             KG     P G    +N+   +      TG 
Sbjct: 18  FAQWYTDVVKKAELVDYS----------SVKGCMVIKPDGYAIWENIQKELDRRFKETGV 67

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSH 121
             + +P      L   E    + +  E+  +         + M   PT E +  D +   
Sbjct: 68  QNVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGLEPLQERMCVRPTSETLFCDFYARD 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP  + Q     R E +     +RSREFL ++ ++   T E ++     M   Y
Sbjct: 128 IQSYRDLPKLYNQWCSVVRWE-KTTRPFLRSREFLWQEGHTAHATAEEAEERTELMLNLY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        + A     G     E    A+              + I +   D   
Sbjct: 187 ADFCEE-------VLAMPVIRGRKTDKEKFAGAEAT------------YTIEALMHDGKA 227

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + S  S         A                                FG ++S      
Sbjct: 228 LQSGTSHNFGDGFAKA--------------------------------FGIQFS------ 249

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K  YV   S+G+   R++ A+I    D  G++ P  +AP ++ ++ I+   +  
Sbjct: 250 --DKDNKLKYVHQTSWGM-TTRLIGAIIMVHGDDSGLVLPPRIAPTQVVIVPIRQQAEGV 306

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   LS  G  V  DD  +  G +F+ +++ G P++V +G K +  ++  +  R
Sbjct: 307 LDKAYELKDILS--GFSVKVDDSDKSPGWKFSESEMRGIPVRVEIGPKDLEQNQAVLVRR 364

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  +SL+E+    +   
Sbjct: 365 DTHEKITVSLDEIKEKVTELL 385


>gi|254166566|ref|ZP_04873420.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289596405|ref|YP_003483101.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197624176|gb|EDY36737.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534192|gb|ADD08539.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 465

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 152/427 (35%), Gaps = 71/427 (16%)

Query: 29  TGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGR 85
            G++      KG++ WLP G + + N++   R+        E+  P L    +   E+  
Sbjct: 19  AGLVDKRYPVKGMHVWLPYGWQLMRNIDEYFRKVFTEHKHQEVYFPLLIPETEFKKEAEH 78

Query: 86  YDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +     D  D  ++  PT E  M  +F   I+S+ +LP   +QI   FR 
Sbjct: 79  IEGFENEVYWVTHGGLDPLDVKLVVRPTSETAMYPMFSLWIRSHADLPLRIFQIVNVFRY 138

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R R     + + F                                      
Sbjct: 139 ETKQTRTFIRVR-----EVHFF-------------------------------------- 155

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                SH     A+  E Q+             ++         + +   +        D
Sbjct: 156 ----ESHTAHATAEESEEQI-------------KDNIEIWKKVADKLALPYVLVRKTDWD 198

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                 +    E    S R +++  I  +   +S P    +   DG   YV   ++G+ +
Sbjct: 199 KFPGAAYSIGAETIMPSGRTLQIATIHQYFQNFSKPYGIEYLKEDGTHDYVHQTTFGM-S 257

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVF 380
            R+V A++    D +G+I P  +AP ++ ++ I   + +       KI   L ++   V 
Sbjct: 258 ERLVGAIVGIHGDNRGLILPPEIAPIQVVIVPIVNKNKEGILQEARKIENELKEL-YRVH 316

Query: 381 WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD      G +F   +L G PL++ +G + +   +V +  R    +  +S +E ++   
Sbjct: 317 LDDRDNYTPGYKFYDWELKGVPLRLEIGPRDLEKGQVVLVRRDNFEKMFVSRKEYVDRIG 376

Query: 440 HRFSNNR 446
               + +
Sbjct: 377 ELLKDIQ 383


>gi|226498392|ref|NP_001147898.1| bifunctional aminoacyl-tRNA synthetase [Zea mays]
 gi|195614460|gb|ACG29060.1| bifunctional aminoacyl-tRNA synthetase [Zea mays]
          Length = 693

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 65/434 (14%), Positives = 145/434 (33%), Gaps = 69/434 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVES 83
           +++  +I  +   G Y   P      +++ +    E  + G      P   S   L  E 
Sbjct: 217 IVKGDLIEYYDVSGCYILRPWAYGIWESIQSFFDAEIKKLGVENAYFPIFVSQKALNKEK 276

Query: 84  GRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +   +D    + +   PT E +M + +   I S+R+LP    Q     
Sbjct: 277 AHVEGFSAEVAWVTKYSDTDLAEPVAIRPTSETIMYNAYSKWISSHRDLPLKLNQWTNVV 336

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       +R+REFL ++ ++   T + +         + L ++ R+  + + +    
Sbjct: 337 RWEFSSPTPFIRTREFLWQEGHTAHATEKEADEQT----YAILELYRRVYEEVLAVPVIK 392

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G                 E++ F    +                                
Sbjct: 393 GV--------------KTESEKFAGGHYTTTVEA-------------------------- 412

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                           + + R ++       G  ++   +  +     +  +V   S+G+
Sbjct: 413 --------------YIQENGRAVQSATSHNLGENFAKMFNIQYLDEKNEKKWVWQTSWGL 458

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVG 376
              R +  +I    D +G++ P  +A  +  +I +   D          +++   L+K G
Sbjct: 459 T-TRSIGIMIMVHGDDQGLVLPPRIAKVQAVIIPVIFKDSEKGKLDAKAKELEEELAKAG 517

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V  DD      G ++   +L G PL++ +G K +   +V +  R  G +  +  E + 
Sbjct: 518 VRVKIDDRTNYSPGWKYNHWELKGVPLRIELGPKDLEKGEVRLVKRFDGSKSQLKQENLG 577

Query: 436 NYASHRFSNNRPVL 449
              +      +  +
Sbjct: 578 KQVAEILEQIQAAM 591


>gi|114559275|ref|XP_001168898.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 7 [Pan
           troglodytes]
          Length = 636

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 134/406 (33%), Gaps = 56/406 (13%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM 104
           E    G  E+  PTL S  LW +SG ++ Y ++M  +               + R+    
Sbjct: 260 EYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDT 319

Query: 105 -IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      +F    +S+R LP          R E      G+ R R F   DA+ 
Sbjct: 320 LALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHI 379

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F  T +  +            ++  LG     +   + P G         L D  E  + 
Sbjct: 380 FCTT-DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLK 434

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +      P                  +  +   A      +  L D+L    +     +
Sbjct: 435 QALKEFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQL 477

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP
Sbjct: 478 D----FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WP 526

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGF 400
             ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +
Sbjct: 527 LWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHY 583

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             Q +VG K  S   V I+ R      +  L E +        N R
Sbjct: 584 NFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 628


>gi|114559285|ref|XP_001168667.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 1 [Pan
           troglodytes]
 gi|55958998|emb|CAI15490.1| threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
          Length = 443

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 134/406 (33%), Gaps = 56/406 (13%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM 104
           E    G  E+  PTL S  LW +SG ++ Y ++M  +               + R+    
Sbjct: 67  EYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDT 126

Query: 105 -IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      +F    +S+R LP          R E      G+ R R F   DA+ 
Sbjct: 127 LALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHI 186

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F  T +  +            ++  LG     +   + P G         L D  E  + 
Sbjct: 187 FCTT-DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLK 241

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +      P                  +  +   A      +  L D+L    +     +
Sbjct: 242 QALKEFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQL 284

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP
Sbjct: 285 D----FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WP 333

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGF 400
             ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +
Sbjct: 334 LWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHY 390

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             Q +VG K  S   V I+ R      +  L E +        N R
Sbjct: 391 NFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 435


>gi|224025842|ref|ZP_03644208.1| hypothetical protein BACCOPRO_02584 [Bacteroides coprophilus DSM
           18228]
 gi|224019078|gb|EEF77076.1| hypothetical protein BACCOPRO_02584 [Bacteroides coprophilus DSM
           18228]
          Length = 521

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 161/446 (36%), Gaps = 85/446 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q   +G     P G    + +  I+ +    TG +    P L     L  E
Sbjct: 47  LVVKADLAEQSPVRGCMVIKPYGYAIWEKMQRILDDMFKATGHVNAYFPLLIPKSYLSRE 106

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++   +++ I S
Sbjct: 107 AEHVEGFAKECAVVTHYRLKNAEDGSGVIVDPAAKLEEELIIRPTSETIIWSTYKNWINS 166

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E       MR+R FL    + +                     
Sbjct: 167 YRDLPILCNQWANVMRWE-------MRTRLFLRTAEFLWQ-------------------- 199

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                  H      +  ET+       M          +  +  
Sbjct: 200 ---------------------EGHTAHATREEAETEA----QKMLHVYGDFAEKYMAVPV 234

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  +         A      E L            + ++ G   + G  ++   +  F  
Sbjct: 235 IKGVKSANERFAGALDTYTIEGL--------MQDGKALQCGTSHFLGQNFAKAFNVQFVD 286

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +  
Sbjct: 287 KNNKLDYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQI 345

Query: 365 ---CEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               E I A+L ++G  V +D+   ++ G +FA  +L G P+++++G + + ++ +EI  
Sbjct: 346 DAKVEGIVAKLRELGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEIMR 405

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R T  +E  + E +  Y  +   + +
Sbjct: 406 RDTLEKETRTCEGIEEYVKNLLEDIQ 431


>gi|260775804|ref|ZP_05884700.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608220|gb|EEX34389.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 392

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 141/429 (32%), Gaps = 46/429 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           +      +L L    I +   G+  W P G +    V A IR  Q R G  E+  P L +
Sbjct: 4   EHRKIGKQLKLFD--ISESVSGMVDWYPKGHELYRKVQAYIRSVQKRYGYHEVRSPVLAN 61

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG  + YG+ M  + + N   +   P        +F   + SYR LP+   +  
Sbjct: 62  HSVWTTSGHNEKYGENMFHVPEHN---LSVKPMSCPFHISMFNELVSSYRELPYRIAEFG 118

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSI 193
           L  R+E      G+ R R F   D + F    +  K            ++   G   K I
Sbjct: 119 LCHRNESSGSLNGLFRLRAFNQDDGHIF-CQEQQIKDELKHFCAMLFEMYEHFGFSRKDI 177

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++    P     S E    ++    +           +P E   +   +  +       
Sbjct: 178 SVKISLRPKNKIGSDELWSRSELYLQEGLDELGIGYELLPGEGAFYGAKVEFSL------ 231

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YV 312
                                K    R  + G  F      S    ++F    G     V
Sbjct: 232 ---------------------KDSLDRHWQCGT-FQLDFFLSEKFDSSFINELGDSEYPV 269

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++    A++   + G     P    P+ + L+ +    Q     C ++  +L
Sbjct: 270 VLHRAALGSLERFIAILLEHYKG---RLPVQFNPYAVVLVPLTVEHQA---YCHELQEQL 323

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +G     DD    +G +   +  +     +++G   +    + +K       +++S E
Sbjct: 324 GAMGIACIIDDSDNSVGYRVRQSYKMKCNYLIVIGDDELKSDVLGLKS--GKDVKEVSRE 381

Query: 433 EVINYASHR 441
            + ++   +
Sbjct: 382 HLSSFFIEQ 390


>gi|114152249|sp|Q2RZJ2|SYP_SALRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 490

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 164/461 (35%), Gaps = 86/461 (18%)

Query: 14  NPRDAEIAS-HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            PRD + +  ++ ++R G + ++S   G     P G    +N+   + +    TG     
Sbjct: 6   TPRDEDYSQWYQDVVRNGQLAENSPARGCMIIKPNGMALWENMRDQLDQMFKDTGHQNYY 65

Query: 71  VPTLQSADLWV-ESGRYDSYGKEMLRLAD-----------------RNDKAMIYGPTHEE 112
            P          E+   + + KE   +                      +  I  PT E 
Sbjct: 66  FPLFIPERYMEREAEHVEGFAKECAVVTHSRLTQDEEGDLVPDPESELGENYIVRPTSET 125

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           ++ D +   I+SYR+LP  + Q     R E+RPR   +R+ EFL ++ ++   T   +  
Sbjct: 126 IIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL-FLRTAEFLWQEGHTAHATETEAVE 184

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +M    L ++                                    F  +      +
Sbjct: 185 EAERM----LDVYTT----------------------------------FAEEYMAMPVL 206

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
               T+ +                                       + ++ G   + G 
Sbjct: 207 QGRKTESERFPGAVDTYCIEAM---------------------MQDGKALQAGTSHFLGQ 245

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++     TF   D ++ YV   S+G+ + R++  +I +  D +G++ P  +AP ++ ++
Sbjct: 246 NFAKAFDCTFTNEDNEEEYVWATSWGV-STRLIGGLIMTHSDDQGLVLPPKLAPHQVVIV 304

Query: 353 NIKAHDQV---CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGS 408
            +   D       + CE++  RL   G  V  D +  +  G +F+  +L G PL++ +G 
Sbjct: 305 PLFFDDDQEGPVMETCERLQERLEDHGIRVKMDQNHTQSPGWRFSEHELRGVPLRLAIGP 364

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + +  VE+  R T  +E +  + +    S    + +  L
Sbjct: 365 RDLENDNVEMARRDTQEKEVVPQDGIAERVSDTLDDIQHAL 405


>gi|300856979|ref|YP_003781963.1| prolyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300437094|gb|ADK16861.1| prolyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 476

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 153/447 (34%), Gaps = 77/447 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R + F     +  + AE+A +  +    +I           P      +N+ + + +   
Sbjct: 12  RDEDFAQWYTDIVKKAELADYSSVRGCMIIR----------PYAYAMWENIQSYLDKRFK 61

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +    ++ +       PT E +  + 
Sbjct: 62  ETGHQNVYMPLFIPESLLQKEKDHIEGFAPEVAWVTHGGNEELTEKLCVRPTSETLFCEH 121

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E         +R FL    + +         +  + 
Sbjct: 122 YAKIVQSYKDLPKLYNQWCSVVRWEKT-------TRPFLRTTEFLWQ-EGHTIHETKKEA 173

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R+ +        + A+                        C K      +  + T
Sbjct: 174 QEETTRMLN--------VYAD-----------------------LCEKVLAIPVLKGQKT 202

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D +      +                                + ++ G   Y G  ++  
Sbjct: 203 DSEKFAGGEATYTIEAL---------------------MHDGKALQAGTSHYLGQNFAKS 241

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   +GK  YV   S+G+   R++ A+I    D  G++ P  +AP ++ ++ I  H
Sbjct: 242 FGMQYSDKEGKLQYVYQTSWGVT-TRLLGAIIMVHGDDNGLVVPPRIAPTQVIIVPIAQH 300

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D   ++  R++K    V  DD  +  G +F+  ++ G P+++ VG K +  ++V 
Sbjct: 301 KEGVLDKANELKDRIAKF-ARVKLDDSDKMAGWKFSEYEMKGVPIRLEVGPKDIEKNQVV 359

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           +  R +G +  +S++ +          
Sbjct: 360 LVRRDSGEKIIVSMDNLEKDIPDLLDK 386


>gi|237796784|ref|YP_002864336.1| prolyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259511585|sp|C3KUV8|SYP_CLOB6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|229260679|gb|ACQ51712.1| proline--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 478

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 148/445 (33%), Gaps = 77/445 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +          KG     P G    +N+   +  +  
Sbjct: 14  MDEDFAQWYTDIVKKAELADYSSI----------KGCMIIRPNGYAIWENIQKYVDTKLK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   +S+P     +L   E    + +  E+  +    D  +       PT E +  + 
Sbjct: 64  EYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWVTHGGDDELAERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E         +R FL    + +              
Sbjct: 124 YAKIVQSYKDLPKLYNQWCSVVRWEKT-------TRPFLRTTEFLWQE------------ 164

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G   HE    A++   ++                
Sbjct: 165 --------------------------GHTIHETKEEAESHSLKIL--------------- 183

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +    +  + +            +           E+     + ++ G   Y G  +S  
Sbjct: 184 NMYSRLCEDMLAMPVVMGKKTEKEKFAGADDTYTIESLMHDGKALQAGTSHYLGQNFSKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  F   +GK  Y    ++ +   R++ A+I    D  G+  P  +AP +  +I +  H
Sbjct: 244 FAIQFSDRNGKLEYPHYTTWAVT-TRLIGAIIMVHGDDSGLKLPPRIAPTQAVIIPVAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +++  RL+KV   V  DD  +  G +++  ++ G PL++ +G K +  ++  
Sbjct: 303 KEGVLEKAKELKERLAKV-VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +  R    +  +SL+E+        
Sbjct: 362 LVRRDNREKTIVSLDEIEVKVQEML 386


>gi|322369853|ref|ZP_08044415.1| prolyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320550189|gb|EFW91841.1| prolyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 485

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 146/428 (34%), Gaps = 69/428 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++L+ G+       G     P G    + +   +      TGA     P L     L  
Sbjct: 24  EVVLKAGLADYAPMGGFIVTRPRGYALWEGLQDHLDGWFKETGAQNAYFPALIPESYLER 83

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           ES   + +  E+  +     D  D+ + + PT E ++T      ++S+R+LP    Q   
Sbjct: 84  ESDIVEGFDPEVAWVTHGGHDELDERLAFRPTSESIITPFMSQWVRSHRDLPLRLNQWCS 143

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E        R++EFL ++ ++   T E +          Y R+F  +   +IP+  
Sbjct: 144 VIRWEATDTKPFFRTKEFLWQEGHTAHETEEEAWDETMTRLEQYQRVFEEV--LAIPVMP 201

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                G    H+    ADT  T    +       +    + +                  
Sbjct: 202 -----GRKPEHDKFPGADT--TTTVEALMPDGKSVQGATSHY------------------ 236

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                            G  ++      F   +  +      S+
Sbjct: 237 --------------------------------LGQGFAEAYDLYFTDENEDERVAHTTSW 264

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKV 375
           G+ + R + A+I +  D +G + P ++AP ++ ++ I   +  +      E I   L + 
Sbjct: 265 GL-SWRALGALIMTHSDEQGFVCPPTLAPEQVVIVPIWQEENREEVLSYAEGIAEDLEEA 323

Query: 376 GCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  E+  G +F   +L G P++  +G   V D ++ + HR  G        ++
Sbjct: 324 GVRVELDDRDERNPGFKFNEWELKGVPVRFEIGPHEVEDDEITVVHRPDGENVVEDRADI 383

Query: 435 INYASHRF 442
                  F
Sbjct: 384 AETVEDHF 391


>gi|299472673|emb|CBN78325.1| Proline--tRNA ligase [Ectocarpus siliculosus]
          Length = 906

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 136/429 (31%), Gaps = 69/429 (16%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +   G Y   P   +  + +   + +E           P   S   L  E    + 
Sbjct: 432 MIDYYDISGCYILRPWAYQMWEAIQQWMDKEIKELDVQNSYFPLFVSKKALEAEKAHVEG 491

Query: 89  YGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +     D  ++ +   PT E +M   F   I+S+R+LP    Q     R E +
Sbjct: 492 FAAEVAWVTKSGEDDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRWEFK 551

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +R+REFL ++ ++   + E +     +    Y R++    L ++P+   +     
Sbjct: 552 NPTPFLRTREFLWQEGHTAHASFEDADKMVIQALELYRRVYEE--LLAVPVIMGT----- 604

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                        E + F             +     I    S                +
Sbjct: 605 -----------KTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYED 653

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    ++P                                           S+G+   R 
Sbjct: 654 ENGEQAIP----------------------------------------WQTSWGLT-TRT 672

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFW 381
           +   +    D +G++ P  VAP +  +I I   K   +   +  + I   L   G  V +
Sbjct: 673 LGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFADPIVKSLKAAGVRVKF 732

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           DD      G ++   +  G P+++ VG + +   +  +  R TG +  +  +E+ +    
Sbjct: 733 DDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEDEITSKVVE 792

Query: 441 RFSNNRPVL 449
                +  L
Sbjct: 793 LLETIQANL 801


>gi|110597728|ref|ZP_01386012.1| prolyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340635|gb|EAT59115.1| prolyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 481

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 158/448 (35%), Gaps = 82/448 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +    +I           P G    + + A +      
Sbjct: 13  SQWYIDLV----RSAKLADYSDVRGCMVIR----------PNGYAIWEKMQAALDRMFKE 58

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVVTHGGGEELAEKLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   TPE S+    +M 
Sbjct: 119 KKWIQSYRDLPILINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATPEESQEEVMRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++                     + E++ +                  I  + TD
Sbjct: 178 ----NVYKTF------------------AEEYMAM----------------PVIMGKKTD 199

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +                                       + ++ G     G  ++   
Sbjct: 200 SEKFAGAVETYCIEAM---------------------MQDTKALQAGTSHNLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  +    YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I I   D
Sbjct: 239 DCQFQTKESTLDYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLATRQVVIIPILRGD 297

Query: 359 -QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                   E I   L K G   F D   +   G +FA  +L G P+++ +G + + ++  
Sbjct: 298 KAAVLAKAEAIADSLKKSGIPSFVDGSEQNSPGWKFAEYELQGIPIRIELGPRDIENNIC 357

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
               R T  + +++L++ +        N
Sbjct: 358 IAARRDTLEKTELALDDTLPLKISEILN 385


>gi|332521716|ref|ZP_08398167.1| prolyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332042546|gb|EGI78747.1| prolyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 492

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 160/452 (35%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A +      TG      P      L+ 
Sbjct: 17  NELVVKADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFE 76

Query: 82  ----------------ESGRYDSYGKEM--LRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
                              R  +       LR+    + ++ ++  PT E ++ + ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLQNDPDNEGKLRVDPEAKLEEELVVRPTSEAIIWNTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T   +         + 
Sbjct: 137 IQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHETRVEALAE----AETM 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++                     + EF+ +                  +    ++ + 
Sbjct: 192 NNVYAT------------------FAEEFMAI----------------PVVQGLKSESER 217

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                                                 + ++ G   + G  ++      
Sbjct: 218 FAGAEETYCIEAL---------------------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++ A+I +  D +G++ P ++AP ++ ++ I   D+  
Sbjct: 257 FTNKEGKQDYVWATSWGV-STRLMGALIMTHSDDQGLVLPPNLAPNQVVIVPIYKTDEQL 315

Query: 362 R---DACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               D    I   L      V +D+    + G++FA  +L G PL++ +G++ + +  VE
Sbjct: 316 EQITDVVNGIMKDLRAKHITVKFDNRTTHRPGAKFAQHELQGVPLRIAIGARDLENGTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R    +E + LE +++         +  L
Sbjct: 376 LARRDILTKETVYLESLVDKVEGLMVEIQDSL 407


>gi|115376687|ref|ZP_01463915.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115366304|gb|EAU65311.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 372

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 119/392 (30%), Gaps = 42/392 (10%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           +  W P G      +   +R E    G  E+  P +    +W  SG + ++   M  L D
Sbjct: 1   MVFWHPRGFVLYQLLEERVRRELASGGYREVRTPQVLGQRIWESSGHWQNFRHGMFVL-D 59

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLM 157
             ++     P        +F+    S+R+LP    +  L  R+E      G+ R R+F  
Sbjct: 60  DGERPFAMKPVSCPGHIQLFQRLAPSFRSLPLRMAEFGLVHRNESSGALHGLFRLRQFTQ 119

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            D + F +  E           S    +   G +   +   S P            A   
Sbjct: 120 DDGHIFCM-EEQVADEVAAFCRSLRAFYRGFGFEDAQVAFSSRP------------AQRA 166

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                  +        +     D  +                               K  
Sbjct: 167 GDDALWDRAEAALLEAAGRVGLDCRMQPGEGAFYGPKLEF---------------ILKDR 211

Query: 278 SARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHD 334
           S R  + G I      + LP      +  + G K     +     G++     ++   H 
Sbjct: 212 SGRDWQCGTI---QLDFVLPERFDLHYVDSGGEKRRPAMLHRAIFGSVERFLGILLEHHQ 268

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G   + P  +AP ++ ++ + A          ++   L   G  V  D  GE +  +   
Sbjct: 269 G---VLPAWLAPEQVRVLPVGADSHA---YAAEVQEHLLAAGLRVEADARGETLSRRILE 322

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           A     P  V+VG +  +   ++I+ R    R
Sbjct: 323 AHQDAVPFAVLVGPREQAGRSIQIRERGGAQR 354


>gi|38537103|gb|AAR23527.1| threonyl-tRNA synthetase [Homo sapiens]
          Length = 443

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 134/406 (33%), Gaps = 56/406 (13%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAM 104
           E    G  E+  PTL S  LW +SG ++ Y ++M  +               + R+    
Sbjct: 67  EYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDT 126

Query: 105 -IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162
               P +      +F    +S+R LP          R E      G+ R R F   DA+ 
Sbjct: 127 LALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHI 186

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F  T +  +            ++  LG     +   + P G         L D  E  + 
Sbjct: 187 FCTT-DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLK 241

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +      P                  +  +   A      +  L D+L    +     +
Sbjct: 242 QALKEFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQL 284

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP
Sbjct: 285 D----FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WP 333

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGF 400
             ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +
Sbjct: 334 LWLSPFQVVVIPVGSEQE---EYAKEARQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHY 390

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             Q +VG K  S   V I+ R      +  L E +        N R
Sbjct: 391 NFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 435


>gi|39938732|ref|NP_950498.1| prolyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|81830053|sp|Q6YQX7|SYP_ONYPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39721841|dbj|BAD04331.1| prolyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 474

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 162/424 (38%), Gaps = 70/424 (16%)

Query: 27  LRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
           L+  +I +  +KG   +LP G    +N+   +     +TG   +  P +    L+  E  
Sbjct: 26  LKAELIAYSEAKGFIIYLPYGYALWENIQKHLNCTLQKTGHQNVYFPLVFPEKLFHKEKN 85

Query: 85  RYDSYGKE--MLRLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
               +  E  M+    + +  + ++  PT E + +  +   I SYR+LP  + Q     R
Sbjct: 86  HIQGFSPEAAMITTTGKKNLSEKLVIRPTSEILFSQYYSKTITSYRDLPKLYNQWCNVVR 145

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAES 199
            E +     +R +EFL ++ ++   T + +      +   Y ++    L L  +  +   
Sbjct: 146 WE-KTTKPFLRGKEFLWQEGHTVHATEQEAMQQTLSILDIYQKLGKNLLALPFVCGK--- 201

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                             ET+ F                                 Y+  
Sbjct: 202 ----------------KTETEKFAGA---------------------------LITYSIE 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           + +H+ +   +   +         +G  F      +      F+  D +  YV   S+G+
Sbjct: 219 ALMHDGQALQAGTSHY--------LGTNF------AKSFQIQFQDCDHQKKYVHQTSWGV 264

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + R++ A+I    D +G++ P  V+P +I +I ++  D   +   E +++ L K    V
Sbjct: 265 -STRLIGALIMVHSDDEGLVLPPYVSPMQIVIIPLQPQDDAVKQTSENLFSILQK-NYRV 322

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D   +  G +F+  +L G PL++ +G + + + +V I  R    ++++  +++ +   
Sbjct: 323 HLDLQDKTAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKTKDLPSQIP 382

Query: 440 HRFS 443
             F 
Sbjct: 383 QLFE 386


>gi|313678529|ref|YP_004056269.1| threonine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950500|gb|ADR25095.1| threonine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 582

 Score =  232 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 66/436 (15%), Positives = 145/436 (33%), Gaps = 36/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            D +   H+ + +   I   S     G   WL  G    + +  ++ +   + G  E+  
Sbjct: 176 SDRKERDHRKIGKDMKIFTFSPLAGQGFPIWLENGMYIHNEIKNLVLKLDKKYGFTEVLT 235

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P   +  L+  SG    Y  +M +     ++ +I  P        ++ +   SYR+LP  
Sbjct: 236 PHFGAELLYKTSGHLAHYKDDMFKPLLVENETLIPRPMTCPHHIIVYNTEKHSYRDLPIR 295

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + +    +R E      G+ R R  L+ + + F +  +       +M+     I     +
Sbjct: 296 YSEQSQLYRYEKSGALTGLERVRGMLLTEGHLF-VRYDQIASEVKRMYKQIKEILSIFNI 354

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +   +      +     + F   +   + +V   K   D  +  +  +            
Sbjct: 355 EISYISLSLRDLNNKDKY-FNNDSIWNKAEVMLEKALNDMKVKYKKVE------------ 401

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + ++  +L     VS   ++                 ++   + K+ 
Sbjct: 402 ---GEAAFYGPKIDIQIDTALGHEITVSTIQLDFLQPEK--------FDLSYIDKNNKEV 450

Query: 311 YVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M   G IG      A++     G    W   +AP + ++I +   +       +K+ 
Sbjct: 451 RPIMIHRGLIGTYERFVAILLEQTKGNLPFW---IAPKQATIIPVNLSEN--LKYAKKVA 505

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L      V  DD  E++  +   A +     Q+I+GS  ++ + V  +         +
Sbjct: 506 KKLLNSDFRVKIDDSDERLNKKIRNAQVSKSKFQLILGSNEMNSNTVSYREYGKEETTTV 565

Query: 430 SLEEVINYASHRFSNN 445
           S+ + I       +N 
Sbjct: 566 SINDFIKLLKKLRNNY 581


>gi|51102322|gb|AAT95874.1| prolyl-tRNA synthetase [Naegleria gruberi]
          Length = 513

 Score =  232 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 140/426 (32%), Gaps = 72/426 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVESGRYDSYGK 91
           +    G Y + P      + V         + G   +  P  +    L  E    + +  
Sbjct: 12  YYEVSGCYIFRPNCFYVWEKVQNFFDGHIKKLGVQNVMFPMFVTKRALETEKDHVEGFSP 71

Query: 92  EMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +        D+ +   PT E +M   +   IKS+R+LP    Q     R E +   
Sbjct: 72  EVAWVTKSGNSDLDEPIALRPTSETIMYPSYAKWIKSHRDLPLKLNQWTNVVRWEFKHAV 131

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             +RSREF  ++ +S          ++     +   ++  L L                 
Sbjct: 132 PFIRSREFYWQEGHS----------AFKNFEQAKTEVYDILELYKRT------------- 168

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            +      I  + T+ +     +                     
Sbjct: 169 ---------------YEEILAVPVIKGKKTEAEKFAGADFTTTIEAFIPTNG-------- 205

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                       R ++     + G  +S      F+  D K   V   S+G+ + R +  
Sbjct: 206 ------------RAVQAATSHHLGQNFSRMFKIEFEAEDKKSKLVYQNSWGL-STRSLGV 252

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +I    D KG++ P  VA  ++ LI +      +       + I+A+L + G  +  DD 
Sbjct: 253 MIMVHGDDKGMVLPPRVAFTQVVLIPLYFKNKDNSELETKSKTIFAQLEENGVRIKLDDR 312

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV----INYAS 439
             +  G ++   +L G PL++ +G K + +    +  R  G +  + LE++    +N   
Sbjct: 313 LEKTPGWKYNYWELRGVPLRIEIGPKDLENGVAMLCRRDNGEKWSVPLEQLTAQYVNEIL 372

Query: 440 HRFSNN 445
            +  N+
Sbjct: 373 DKIHNS 378


>gi|11499201|ref|NP_070438.1| prolyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|2648947|gb|AAB89637.1| prolyl-tRNA synthetase (proS) [Archaeoglobus fulgidus DSM 4304]
          Length = 575

 Score =  232 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 157/437 (35%), Gaps = 83/437 (18%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     E  + AEI           +    KG+Y W P G K    V + +RE  +    
Sbjct: 113 FSEWYHEVIQTAEIMD---------VRYPVKGLYVWFPFGFKIRQLVYSKLREIMD-REH 162

Query: 67  IEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSH 121
            E+  P L    +L  E      +  E+  +        D  +   PT E  M  +FR  
Sbjct: 163 DEVYFPALIPETELGKEGEHIKGFEDEVYWITHGGLTPLDVKLALRPTSETAMYPMFRLW 222

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVS 180
           ++++ +LP   YQI   FR E +    ++R RE    K+A++     E +     K    
Sbjct: 223 VRNHADLPLKVYQIVNTFRYETKHTRPLIRLREITSFKEAHTVHKDFEEAAEHVKKAI-- 280

Query: 181 YLRIFHRL-GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +       +IP                          V    ++  FP  +    F
Sbjct: 281 --GFYKEFYDFLAIPYM------------------------VIRRPEWDKFPGAAYTIAF 314

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D I                                     R +++G + +    ++    
Sbjct: 315 DTI---------------------------------MPDGRTLQIGTVHHLADNFARTFD 341

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAH 357
             ++  +G+ +Y     YGI + R +AA+I    D  G++ P  VAP +I +I I  K  
Sbjct: 342 IKYEAPNGEHYYAHQTCYGI-SERCIAALISVHGDDLGLVLPFEVAPVQIVIIPILYKGK 400

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++   +AC K+  +L      V  D+  ++ G+++   +L G P++  +G +        
Sbjct: 401 EEAVMEACRKLAEKLKA--FRVVLDEGEDRPGAKYYKWELKGVPIRFEIGPRDAEKGVAV 458

Query: 418 IKHRLTGIREDMSLEEV 434
           +  R    + ++ L+EV
Sbjct: 459 VSFRDEKRKFEVPLDEV 475


>gi|170759289|ref|YP_001788660.1| prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|259511588|sp|B1L224|SYP_CLOBM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169406278|gb|ACA54689.1| proline--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 478

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 148/445 (33%), Gaps = 77/445 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +          KG     P G    +N+   +  +  
Sbjct: 14  MDEDFAQWYTDIVKKAELADYSSI----------KGCMIIRPNGYAIWENIQKYVDTKLK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   +S+P     +L   E    + +  E+  +    D  +       PT E +  + 
Sbjct: 64  EYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWVTHGGDDELAERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E         +R FL    + +              
Sbjct: 124 YAKIVQSYKDLPKLYNQWCSVVRWEKT-------TRPFLRTTEFLWQE------------ 164

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G   HE    A++   ++                
Sbjct: 165 --------------------------GHTIHETKEEAESHSLKIL--------------- 183

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +    +  + +            +           E+     + ++ G   Y G  +S  
Sbjct: 184 NMYSRLCEDMLAMPVVMGKKTEKEKFAGADDTYTIESLMHDGKALQAGTSHYLGQNFSKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  F   +GK  Y    ++ +   R++ A+I    D  G+  P  +AP +  +I +  H
Sbjct: 244 FAIQFSDRNGKLEYPHYTTWAVT-TRLIGAIIMVHGDDSGLKLPPRIAPTQAVIIPVAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +++  +L+KV   V  DD  +  G +++  ++ G PL++ +G K +  ++  
Sbjct: 303 KEGVLEKAKELKEKLAKV-VRVKLDDSDKMPGWKYSEYEMKGIPLRIEIGPKDIEKNQAV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +  R    +  +SL+E+        
Sbjct: 362 LVRRDNREKTIVSLDEIEIKVQEML 386


>gi|154278048|ref|XP_001539849.1| threonyl-tRNA synthetase [Ajellomyces capsulatus NAm1]
 gi|150413434|gb|EDN08817.1| threonyl-tRNA synthetase [Ajellomyces capsulatus NAm1]
          Length = 733

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 146/469 (31%), Gaps = 55/469 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + + A++R
Sbjct: 291 KQMQEHLKFLEE----AEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQALLR 346

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 347 SEYRKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMF 405

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R                       + +
Sbjct: 406 GHRERSYRELPLRIADFGVLHRNEASGALHGLTR------------------IMQEIDGL 447

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ +   + 
Sbjct: 448 FDFLRAIYGLFGFSF-KLKLSTRPEKYMGKLETWNYAEDQLRAAMTKFKGNDWEVDEGDG 506

Query: 238 DFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VG 285
            F     D+   +++  ++                      +  +    E          
Sbjct: 507 AFYGPKIDVTIQDALKREFQCATIQLDYQMPVNFKLEYMTGETGAKAKPEEKSAGAPAAK 566

Query: 286 HIFYFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                    + P       +D    G+   V +    IG+      +I     GK   WP
Sbjct: 567 TADRPAGDAAKP-DVPPTNSDEPGPGRARPVVIHRAIIGSFERFFGIIIEHFGGK---WP 622

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             ++P +I ++ +        D  E++   L     +V  D  G  +  +     +  + 
Sbjct: 623 FWLSPRQILIVPVMP---AVNDYVEELQRILKGDKLNVDIDISGNTMQKKIRTGQIAQYN 679

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
              +VG++  S   V I++R     +     + LEE            R
Sbjct: 680 FIFVVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARAKLRALRKERR 728


>gi|313113439|ref|ZP_07799028.1| prolyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624166|gb|EFQ07532.1| prolyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 479

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 148/429 (34%), Gaps = 68/429 (15%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ++  ++   S KG     P GQ   + +   +      TG   +++P L    L  + G 
Sbjct: 28  VKAELVEYSSVKGFIILRPYGQAIWELIQKDMDARFKATGHENVAMPVLIPESLLQKEGE 87

Query: 86  Y-DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +     D+ ++ +   PT E +  D +   + SYR LP  + Q     R
Sbjct: 88  LVNGFAPEVAWVTMGGSDKLEERLAVRPTSETMFCDHWSRVLHSYRELPMKYNQWCSVVR 147

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E         +R FL                                            
Sbjct: 148 WEKT-------TRPFLR------------------------------------------- 157

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 S EF       E                +  +    +    +            
Sbjct: 158 ------SREFWWQ----EGHTIHETAAEAEAETQQQLNCYADVCEQDLAIPVVKGRKTDK 207

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +           E      + ++ G   YFG K+S     TF G D + H+    S+G+ 
Sbjct: 208 EKFAGAEATYTIEAMMKDGKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV- 266

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R+V A+I +  D  G+I P +VAP ++ ++ I AH     +   ++  ++SK    V 
Sbjct: 267 STRLVGAIIMTHGDDDGLILPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKY-ARVK 325

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD     G +F+  ++ G PL++ +G K +  ++  +  R T  +  +SL+E+      
Sbjct: 326 LDDSDNAPGWKFSQWEMKGVPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDELETAIPA 385

Query: 441 RFSNNRPVL 449
           +    R  L
Sbjct: 386 QLEALRKDL 394


>gi|295101509|emb|CBK99054.1| prolyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 479

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 148/429 (34%), Gaps = 68/429 (15%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ++  ++   S KG     P GQ   + +   +      TG   +++P L    L  + G 
Sbjct: 28  VKAELVEYSSVKGFIILRPYGQAIWELIQKDMDARFKATGHENVAMPVLIPESLLQKEGE 87

Query: 86  Y-DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +     D+ ++ +   PT E +  D +   + SYR LP  + Q     R
Sbjct: 88  LVNGFAPEVAWVTMGGSDKLEERLAVRPTSETMFCDHWSRVLHSYRELPMKYNQWCSVVR 147

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E         +R FL                                            
Sbjct: 148 WEKT-------TRPFLR------------------------------------------- 157

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 S EF       E                +  +    +    +            
Sbjct: 158 ------SREFWWQ----EGHTIHETAAEAEAETQQQLNCYADVCEQDLAIPVVKGRKTDK 207

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +           E      + ++ G   YFG K+S     TF G D + H+    S+G+ 
Sbjct: 208 EKFAGAEATYTIEAMMKDGKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV- 266

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R+V A+I +  D  G+I P +VAP ++ ++ I AH     +   ++  ++SK    V 
Sbjct: 267 STRLVGAIIMTHGDDDGLILPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKY-ARVK 325

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD     G +F+  ++ G PL++ +G K +  ++  +  R T  +  +SL+E+      
Sbjct: 326 LDDSDNAPGWKFSQWEMKGVPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDELETAIPA 385

Query: 441 RFSNNRPVL 449
           +    R  L
Sbjct: 386 QLEALRKDL 394


>gi|218132358|ref|ZP_03461162.1| hypothetical protein BACPEC_00217 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992696|gb|EEC58698.1| hypothetical protein BACPEC_00217 [Bacteroides pectinophilus ATCC
           43243]
          Length = 578

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 95/228 (41%), Positives = 133/228 (58%), Gaps = 1/228 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +       +E P D  I S++  +R G I   + GIYS  P  ++    +  IIREE
Sbjct: 1   MKLNNLIGERFKEKPADCVIDSYEFCIRGGYIKYVANGIYSLFPPMRRITQKIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P    + LW ESGRY S G E+LR  DRN   M+ G THEE    + R 
Sbjct: 61  MDSVGCQEVLFPVTLPSSLWEESGRYQSVGDELLRFKDRNGSQMVLGMTHEEAAVHLVRE 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + +SY   PF+ YQIQ KFRDE RPR G++R REF MKDAYSF LT +  +  Y +M  S
Sbjct: 121 YGRSYARYPFSIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHLTQKSLEDYYQQMANS 180

Query: 181 YLRIFHRLGLKSIP-MRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF ++G+  +  ++++SG IGG++SHE+++L D GE  +    D 
Sbjct: 181 YNRIFAKVGIPEVISVKSDSGMIGGNVSHEYMLLCDAGEDSIVLCDDC 228



 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 104/215 (48%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D      N      + LN   E     Y   + +    +     +     +RGIEVG+IF
Sbjct: 353 DNMCCGANEIDYHYVGLNLHREIGEIEYVDVAKIQEGGICPCCNKKSIRISRGIEVGNIF 412

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GTKYS  M   +   +G++    MG YGIG  R+ A++ E+ HD  G IWP SVAP++
Sbjct: 413 QLGTKYSDAMGLKYVDTNGEEKVPIMGCYGIGIGRLAASICEAHHDDYGPIWPISVAPWQ 472

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  ++A    C++  ++IY  L     +V +DD     G  F+ ADLLG P+++I G 
Sbjct: 473 VHICCMRADKIECKEVTDRIYNELQSSNVEVLYDDRKVSAGVMFSDADLLGIPIRIIAGP 532

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           K +   KVEI  R   +++ + ++ V+        
Sbjct: 533 KNIEQGKVEILTRNKAVKKLVDIDSVVEEVGELIK 567


>gi|320102238|ref|YP_004177829.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Isosphaera
           pallida ATCC 43644]
 gi|319749520|gb|ADV61280.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Isosphaera
           pallida ATCC 43644]
          Length = 752

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 117/349 (33%), Gaps = 39/349 (11%)

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
           +  +  P +     +I+++  +SYR+LP    +    +R E      G+ R R F   DA
Sbjct: 412 EEYLLKPMNCPHHIEIYKAQQRSYRDLPVRLAEFGTVYRYEQSGELSGLTRVRGFTQDDA 471

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGET 219
           + F  TPE  +  + +       +   LGL    +R   S P           +    E 
Sbjct: 472 HLF-CTPEQVRSEFAETMRLTQFVLESLGLSDYRVRLSRSDPDDPKFQGADASIWLKAEA 530

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            +                         +++E    PY             +    +    
Sbjct: 531 DI------------------------RAVLEDLGLPYDEGIGEAAFYGPKADFLVRDCLG 566

Query: 280 RGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           R  ++G +      Y LP      + G D   H  V +     G+M     ++     G 
Sbjct: 567 RQWQLGTV---QLDYVLPERFGLEYIGPDNAPHRPVMIHRAPFGSMERFMGILIEHFAGA 623

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             +W   +AP ++ ++ I        +    +   L + G     D   E+IG++   A 
Sbjct: 624 FPLW---LAPEQVRVLPI---SDKFNEYGRTVLHTLRQAGLRAELDQRPEKIGAKIRDAQ 677

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           L   P+ ++VG+K      V  + R+ G R  +SL + +          
Sbjct: 678 LEKIPVMLVVGAKEAETGTVSYRDRVDGDRGVVSLADAVASLRREVETR 726


>gi|294508573|ref|YP_003572632.1| Prolyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294344902|emb|CBH25680.1| Prolyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 490

 Score =  232 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 164/461 (35%), Gaps = 86/461 (18%)

Query: 14  NPRDAEIAS-HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            PRD + +  ++ ++R G + ++S   G     P G    +N+   + +    TG     
Sbjct: 6   TPRDEDYSQWYQDVVRNGQLAENSPARGCMIIKPNGMALWENMRDQLDQMFKDTGHQNYY 65

Query: 71  VPTLQSADLWV-ESGRYDSYGKEMLRLAD-----------------RNDKAMIYGPTHEE 112
            P          E+   + + KE   +                      +  I  PT E 
Sbjct: 66  FPLFIPERYMEREAEHVEGFAKECAVVTHSRLTQDEEGDLVPDPESELGENYIVRPTSET 125

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           ++ D +   I+SYR+LP  + Q     R E+RPR   +R+ EFL ++ ++   T   +  
Sbjct: 126 IIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL-FLRTAEFLWQEGHTAHATETEAVE 184

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +M    L ++                                    F  +      +
Sbjct: 185 EAERM----LDVYTT----------------------------------FAEEYMAMPVL 206

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
               T+ +                                       + ++ G   + G 
Sbjct: 207 QGRKTESERFPGAVDTYCIEAM---------------------MQDGKALQAGTSHFLGQ 245

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++     TF   D ++ YV   S+G+ + R++  +I +  D +G++ P  +AP ++ ++
Sbjct: 246 NFAKAFDCTFTNEDNEEEYVWATSWGV-STRLIGGLIMTHSDDQGLVLPPKLAPHQVVIV 304

Query: 353 NIKAHDQV---CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGS 408
            +   D       + CE++  RL   G  V  D +  +  G +F+  +L G PL++ +G 
Sbjct: 305 PLFFDDDQEGPVMETCERLQERLEDYGIRVKMDQNHTQSPGWRFSEHELRGVPLRLAIGP 364

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + +  VE+  R T  +E +  + +    S    + +  L
Sbjct: 365 RDLENDNVEMARRDTQEKEVVPQDGIAERVSDTLDDIQHAL 405


>gi|325090828|gb|EGC44138.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 578

 Score =  232 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 77/459 (16%), Positives = 157/459 (34%), Gaps = 70/459 (15%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D  +   +  L   +  Q+S G   +LP G   L+ + + +R +  + G +E+  P++
Sbjct: 88  PADHRVVGTEQELF--VTSQYSPGSPLFLPNGTHILNKLTSFLRAQYTKYGFLEVLTPSI 145

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------DKAMIYGPTHEEVMTDIFRSH 121
               LW  SG + +Y  +M  +  RN             D++    P +      +F+S 
Sbjct: 146 YKKSLWKVSGHWQNYKDDMYEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQ 205

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F   P+            
Sbjct: 206 NHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGSEIESALKF 264

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +    G ++  +   + P      S E    A+                        
Sbjct: 265 TDTVMRTFGFENYRLVLSTRPEKDFIGSVELWDSAERQLRDALEKSGRSWE--------- 315

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + ++ DS  +  ++S   +++     F  +Y++P  
Sbjct: 316 -----------LNHGDGAFYGPKIDMQIQDSDGKFHQLSTIQLDMNLPQRFELEYTVPEG 364

Query: 300 ATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                 +  GK   V +     G++    A++  +++G    WP  ++P +  ++ +   
Sbjct: 365 EEDYNPETPGKAVPVLIHRAIFGSLERFFALLIENYNG---RWPFWLSPRQGIILTVSQD 421

Query: 358 DQVCRDACEKIYAR------LSKVG------------------CDVFWDDMGEQIGSQFA 393
           +++ + A +           LS  G                    +  D     +G +  
Sbjct: 422 EKLLQAADDAAAKMSGYRRVLSSSGDANSTTGPPKPLSPARTTFRIDLDTSARSLGKKIR 481

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            A  + + L  ++G K + D  V++     G +  M+LE
Sbjct: 482 EAKKMKYNLIFVLGEKNLVDGSVDV---DLGGQMMMALE 517


>gi|296124433|ref|YP_003632211.1| threonyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296016773|gb|ADG70012.1| threonyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 736

 Score =  232 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 81/514 (15%), Positives = 152/514 (29%), Gaps = 107/514 (20%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIH----QHSKGIYSWLPLGQKALDNVNAIIR 58
            S+  L    E   +A+   H+++ +   +     +   G+  WLP G      +   I+
Sbjct: 238 FSQKDLDAHLEQVNEAKRRDHRVLGKQLNLFSISPEVGAGLCLWLPKGATVRALLEEFIK 297

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---------------------A 97
            E  + G   +  P +   +L+  SG +  Y                             
Sbjct: 298 GELLKRGYQPVYTPHIGRVELYETSGHFPYYRDSQFTPLYGHDGGQLIDFWIRKLQDNAI 357

Query: 98  DRNDKAMIY--------------GPTHEEVMTDIFRSHIK---SYRNLPFT------FYQ 134
              D+  +                 +      ++ R+  K    Y   P         Y+
Sbjct: 358 SEADEKSLLASAKILGVEIPEYAAASGNPAKIEVLRTWEKQQERYLLKPMNCPHHAQIYK 417

Query: 135 -IQLKFRD--------------ELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            +Q  +RD              E      G++R R     DA+ F  TPE  +  +    
Sbjct: 418 SMQRSYRDLPVRLAEFGTVYRHEQSGELNGMLRVRGLTQDDAHLF-CTPEQVEEEFRATL 476

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGD---LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                +   +GL+   ++        D    S E    A+     V    +        E
Sbjct: 477 QLVQFVLASVGLEDYRVQLSLRDPKSDKYVGSEENWQRAEASLRGVLTELNLPFTAREGE 536

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +                              +    K    R  ++G +      Y+
Sbjct: 537 AAFYGPK---------------------------ADFMVKDCIGREWQLGTV---QLDYN 566

Query: 296 LP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           LP      + GAD + H  V +     G+M     ++     G   +W   +AP ++ ++
Sbjct: 567 LPERFQLEYVGADNQAHRPVMIHRAPFGSMERFTGMLIEHFAGAFPLW---LAPEQVRVL 623

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +I    +       ++       G  V  D  G +I  +   A +   P  ++VG K   
Sbjct: 624 SISDKFEG---YAREVEREFRAAGFRVTTDLRGAKINGKIRDAQIELIPYMLVVGGKDQE 680

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +  V I+ R+ G    + L E I       +  R
Sbjct: 681 NRTVSIRDRIEGDLGAVPLAEAITRLQQEVTEKR 714


>gi|240280652|gb|EER44156.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325089093|gb|EGC42403.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 733

 Score =  232 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 146/469 (31%), Gaps = 55/469 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ +  L  L+E    AE  +H  + +        + S G    LP G K  + + A++R
Sbjct: 291 KQMQEHLKFLEE----AEKRNHLRIGKDQDLFFFDEVSPGCPFLLPNGTKIFNALQALLR 346

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F
Sbjct: 347 SEYRKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMF 405

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +SYR LP       +  R+E      G+ R                       + +
Sbjct: 406 GHRERSYRELPLRIADFGVLHRNEASGALHGLTR------------------IMQEIDGL 447

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F     I+   G     ++  + P       E    A+             D+ +   + 
Sbjct: 448 FDFLRAIYGLFGFSF-KLKLSTRPEKYMGKLETWNYAEDQLRAAMTKFKGNDWEVDEGDG 506

Query: 238 DFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------VG 285
            F     D+   +++  ++                      +  +    E          
Sbjct: 507 AFYGPKIDVTIQDALKREFQCATIQLDYQMPVNFKLEYMTGETGAKAKPEEKSAGAPAAK 566

Query: 286 HIFYFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                    + P       +D    G+   V +    IG+      +I     GK   WP
Sbjct: 567 TADKPAGDAAKP-DVPPTNSDEPGPGRARPVVIHRAIIGSFERFFGIIIEHFGGK---WP 622

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             ++P +I ++ +        D  E++   L     +V  D  G  +  +     +  + 
Sbjct: 623 FWLSPRQILIVPVMP---AVNDYVEELQRILKGDKLNVDIDISGNTMQKKIRTGQIAQYN 679

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
              +VG++  S   V I++R     +     + LEE            R
Sbjct: 680 FIFVVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARAKLRALRKERR 728


>gi|256371437|ref|YP_003109261.1| prolyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008021|gb|ACU53588.1| prolyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 572

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 95/227 (41%), Positives = 147/227 (64%), Gaps = 1/227 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S       +E+PRDAE+ASH+L++R G +   + G++S LPLG + L+ + AI+ EE
Sbjct: 1   MRASDLVFATQREDPRDAEVASHRLLVRGGYMRALASGVWSLLPLGFRVLERIGAIVAEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  ++ +P L   +LW E+GR  +    ++R+ D    +++ GPTHEE +      
Sbjct: 61  FDRAGGNQLLLPALHPVELWQETGRNVTMDDVLMRV-DSKLGSLVLGPTHEEAVIAAVGP 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE R RFG+MR+REF+M D Y+FD+  E  + SY +++ +
Sbjct: 120 DLASYRSLPAFVYQIQTKFRDEPRARFGLMRTREFVMADGYTFDVDREHMRVSYQRVYEA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           YLR++ RLGLK++P+ A++G IGGD++HEF+V +  GE      +  
Sbjct: 180 YLRVYRRLGLKAVPVEADAGAIGGDVNHEFMVPSAIGEDHFASCRAC 226



 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 4/186 (2%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMS-ATFKGADGKDHYVQMG 315
             +V      D  P         R +EVGH F  G  YS  MS  TF G DG  H   MG
Sbjct: 379 WIEVVEVVDGDPCPRCGAPLALVRAVEVGHTFQLGQLYSSRMSRGTFVGEDGATHPFWMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R++A + E      G+ WP  +APF+++++   + D V   A   I   L ++
Sbjct: 439 CYGIGVSRLIAVIAEEYQRDGGLAWPLEIAPFQVAVVPAGSSDDVAATAAN-IAEELERM 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  +D G   G      +L+G PL V+VG++ ++  +VE+++R+ G    + L +V 
Sbjct: 498 GRRVLLEDRGLSFGVAARDQELVGAPLWVVVGARSLARGEVELRNRVDGRTLTVQLRDVA 557

Query: 436 NYASHR 441
                 
Sbjct: 558 QAVDAE 563


>gi|307244722|ref|ZP_07526824.1| proline--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306491899|gb|EFM63950.1| proline--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 481

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 138/419 (32%), Gaps = 67/419 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    + +          TG   +  P L    L   E+   + +  E+  
Sbjct: 39  KGFMVIKPYGFALWEKIRDYADGLFKETGHKNVYFPLLIPESLLNKEAEHVEGFAPEVAW 98

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E ++  ++   + SYR LPF + Q     R E         
Sbjct: 99  VTQGGNKVLEERLAVRPTSETIICTMYAKWLNSYRQLPFLYNQWNSVVRWEKS------- 151

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL    + +                                        G   HE  
Sbjct: 152 TRPFLRTSEFLWQE--------------------------------------GHTIHE-- 171

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E +                 D   I  ++    +      A+     E      
Sbjct: 172 -----TEQEAIDETLQQLATYKKVAEDLMAIPVIDGKKSESEKFAGASDTYTIEA----- 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G   + G  ++     TF   DG   +    S+GI + R++  +I  
Sbjct: 222 ---MMHDGKALQSGTSHFLGQHFTKAFDITFSDRDGNLAHPYHTSWGI-STRLIGGLIMV 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
             D +G++ P  +AP ++ +I I A+     +  +K+ A L   G  V  DD      G 
Sbjct: 278 HSDNRGLVLPPKMAPTQVIIIPIAANKGGVMEVVDKVAADLKAKGITVEVDDRSNYSPGY 337

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +F  A++ G P+++ +G K +  ++     R    + +MSL+ V +  S    + +  L
Sbjct: 338 KFNDAEMKGIPVRLEIGPKDIEKNQALAFRRDELTKSEMSLDTVADQVSTLLDDIQKNL 396


>gi|330752678|emb|CBL88143.1| prolyl-tRNA synthetase [uncultured Cytophagia bacterium]
          Length = 491

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 165/464 (35%), Gaps = 88/464 (18%)

Query: 10  ILQENPRDAEIAS---HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           + +  P   E  S   ++L+ + G+      +G     P G    + +   +      TG
Sbjct: 1   MAKAIPNREENYSLWYNELVKKAGLAENSPVRGCMIIKPYGFSIWEKMQQQLDIMFKNTG 60

Query: 66  AIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA------DRN------------DKAMIY 106
                 P       L  E+   + + KE   +       D N            +  +I 
Sbjct: 61  HENAYFPLFIPKSHLSKEADHIEGFAKECAVVTHYRLKNDENGKELIVDPDAKLEDELIV 120

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E V+ D +++ I+SYR+LP    Q     R E       MR+R FL    + +   
Sbjct: 121 RPTSETVIWDTYKNWIQSYRDLPLLINQWANVIRWE-------MRTRLFLRTTEFLWQ-- 171

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                                                     E      T E  +  ++ 
Sbjct: 172 ------------------------------------------EGHTAHATQEEAILETQQ 189

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            ++       +DF +      + +   +     +   +    ++L ++     + ++ G 
Sbjct: 190 MLEVY-----SDFVEKYMALPVTKGVKSESERFAGAVDTYCIEALMQDG----KALQAGT 240

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             + G  ++   +  F   +GK+  V   S+G+ + R++ A+I +  D  G++ P ++AP
Sbjct: 241 SHFLGQNFAKAFNVKFTNKEGKEDLVWGTSWGV-STRLMGALIMAHSDDDGLVLPPNLAP 299

Query: 347 FKISLINIKAHDQVCRDAC---EKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPL 402
            ++ +I I   ++         EKI   L   G  V +D     + G +FA  +L G PL
Sbjct: 300 IQVVIIPIYKGEEQLERIALKVEKIRNSLISKGISVKFDRRDTHKPGWKFAEYELKGVPL 359

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ +G K + +  +EI  R T  ++   ++ + +         +
Sbjct: 360 RIAIGPKDLDNGTLEIARRDTKEKKSYPVDGIEDKIQFLLKEIQ 403


>gi|324500217|gb|ADY40110.1| Bifunctional aminoacyl-tRNA synthetase [Ascaris suum]
          Length = 1924

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 149/437 (34%), Gaps = 75/437 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWV 81
            +++ +  MI  +   G Y   P      + +     +E  + G      P   S   L  
Sbjct: 1441 QVITKADMIEYYDVSGCYVLRPWSFAIWETIKKWFDKEIKKLGVRNCYFPMFVSQGALEK 1500

Query: 82   ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +         + +   PT E VM   +   IKS+R+LP    Q   
Sbjct: 1501 EKTHIADFAPEVAWVTRAGNSEMSEPIAIRPTSETVMYPSYAKWIKSHRDLPLRLNQWCN 1560

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++   T E +             +F  L L    +  
Sbjct: 1561 VVRWEFKHPTPFLRTREFLWQEGHTAFQTAEEAHQE----------VFQILDL-YAKVYT 1609

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +   I        +V     E + F               DF   +     V        
Sbjct: 1610 DLLAIP-------VVKGRKSEKEKFAG------------GDFTTTVEAYVPVNG------ 1644

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                                  R I+     + G  +S     +F+  + G   YV   S
Sbjct: 1645 ----------------------RAIQGATSHHLGQNFSKMFDISFEDPNTGSKAYVYQNS 1682

Query: 317  YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIY 369
            +G+   R + A++    D  G++ P  VAP ++ ++ +    Q   +         ++I 
Sbjct: 1683 WGLT-TRTIGAMVMIHGDDFGLVLPPRVAPIQVIVVPVGITAQTSEEQRVSLISKAKEIA 1741

Query: 370  AR-LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +  L++       D       G +F   +  G P+++ VG K V++S+V    R +G + 
Sbjct: 1742 SMLLTEADIRAEADLRDNYSPGWKFNHWEQKGVPIRMEVGPKDVANSQVTCVIRHSGKKV 1801

Query: 428  DMSLEEVINYASHRFSN 444
             + +  +I  ++    +
Sbjct: 1802 AVPMANLIAASNQMLED 1818


>gi|154151503|ref|YP_001405121.1| prolyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|166980134|sp|A7I9R7|SYP_METB6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154000055|gb|ABS56478.1| prolyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 478

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 146/413 (35%), Gaps = 71/413 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G      V   +RE  +     E   P L    +   E+     + 
Sbjct: 30  VRYPVKGLYVWFPYGFAIRKFVYQHLRELLD-RDHKETLFPLLIPEQEFMKEAEHIKGFE 88

Query: 91  KEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        +  +   PT E  +  +F   ++S+ +LP   YQI   FR E +  
Sbjct: 89  DEVYWVTHGGTTPLEVKLALRPTSETAIYPMFALWVRSHADLPIKIYQIVNTFRYETKQT 148

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE     ++++   T + +                                   
Sbjct: 149 RPLIRLREITSFMESHTVHATWDEA----------------------------------- 173

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E  V ++   T+ F     +   I S+  D+D     +  +                
Sbjct: 174 ---EIQVESEIALTREFYRNLCIPIII-SKRPDWDKFPGADYTIAVDAI----------- 218

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                       + + +++G + + G  +S   +  ++  +G+        YGI + R +
Sbjct: 219 ----------MPNGKTLQIGTVHHLGNHFSRTFNIQYEDKNGEQKEAYQTCYGI-SERCI 267

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDD 383
           AA+I    D KG+I P +VA F++ ++ I      +    A  K+   L   G  V  D 
Sbjct: 268 AALISLHGDDKGLILPPTVATFQVVIVPITIGKRHEDVLAAAGKLKNDLENAGLRVTLDT 327

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              + G+++   ++ G PL++ +G + +   K     R TG +  + L     
Sbjct: 328 RDLRPGAKYYWWEIRGVPLRLELGPRDLDSGKAMAVTR-TGEKTTICLANAAE 379


>gi|193216931|ref|YP_002000173.1| threonyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193002254|gb|ACF07469.1| threonyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 579

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/447 (14%), Positives = 161/447 (36%), Gaps = 33/447 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +L +++E   RD       L +   +     +G   WL  G K  + +   + + 
Sbjct: 164 KELEEYLALVEERKERDHRKIGKDLNIFA-VSQLSGQGFPIWLEDGMKIHNAIRDYVLKL 222

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P      L+  SG +D Y ++M      +++ ++  P        ++  
Sbjct: 223 DRKFGFKEVLTPHFGEKKLYEISGHWDHYQEDMFTPIKMDNETLVARPMTCPHHIVLYNM 282

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP  + +    +R E      G+ R R   + + + F +  +  K  +  ++ 
Sbjct: 283 TRRSYRDLPIRYSEQSRLYRYEKSGALSGLERVRSMDLTEGHVF-VRKDQIKAEFKHLYN 341

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +      ++   +                   D   +  F + D M     ++  + 
Sbjct: 342 MIQKALSDFDIQVDHVSLSLR--------------DPNNSVKFFNDDKMWNQAEADLKEV 387

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             +  L    +++    A      + ++   L +   +S   ++      F  KY     
Sbjct: 388 --LKELKIEYKEFIGEAAFYGPKIDFQVKTVLNKIITMSTLQLDFLLPARFEMKY----- 440

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                 +     V +    IG      A++     G   + P  ++P +++++ I     
Sbjct: 441 --VDDKEEFQTPVLIHRGLIGTYERFIAILLEQTKG---VLPYWLSPRQVTILPIV---D 492

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C+K+Y     +G +   D   E+I  +   A LL     +++G   ++++ + ++
Sbjct: 493 EVNDYCQKLYEEFIDLGINANVDLRSERINKKIREAQLLKTKFIIVIGKNEIANNTLAVR 552

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
              +   +  + EE +    +  +N +
Sbjct: 553 AYGSEETKTYTKEEFLTMLENLKNNLK 579


>gi|297664845|ref|XP_002810834.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 436

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 149/288 (51%), Gaps = 7/288 (2%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T +  S  K SY+ LP
Sbjct: 119 MPSLNPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F+RLG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNRLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK---DFMDFPIPSENTDFDDIISLN 246
           L  + ++A+ G IGG +SHEF +  D GE  +   K    F    +   N          
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEXPLEKGKPPGPFTWLTLAPGNMLLQQGPGSA 298

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +    +       S               + + RG   GH       +
Sbjct: 299 AASRIFPFCCFYISSACAFYNLVFCHVPAKGARRG---GHPGVAPDIF 343


>gi|257438845|ref|ZP_05614600.1| proline--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257198660|gb|EEU96944.1| proline--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 479

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 148/429 (34%), Gaps = 68/429 (15%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ++  ++   S KG     P GQ   + +   +      TG   +++P L    L  + G 
Sbjct: 28  VKAELVEYSSVKGFIILRPYGQAIWELIQKDMDARFKATGHENVAMPVLIPESLLQKEGE 87

Query: 86  Y-DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +     D+ ++ +   PT E +  D +   + SYR LP  + Q     R
Sbjct: 88  LVNGFAPEVAWVTMGGSDKLEERLAVRPTSETMFCDHWSRVLHSYRELPMKYNQWCSVVR 147

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E         +R FL                                            
Sbjct: 148 WEKT-------TRPFLR------------------------------------------- 157

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 S EF       E                +  +    +    +            
Sbjct: 158 ------SREFWWQ----EGHTIHETAAEAEAETQQQLNCYADVCEQDLAIPVVKGRKTDK 207

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +           E      + ++ G   YFG K+S     TF G D + H+    S+G+ 
Sbjct: 208 EKFAGAEATYTIEAMMKDGKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV- 266

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + R+V A+I +  D  G+I P +VAP ++ ++ I AH     +   ++  ++SK    V 
Sbjct: 267 STRLVGAIIMTHGDDDGLILPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKY-ARVK 325

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD     G +F+  ++ G PL++ +G K +  ++  +  R T  +  +SL+E+      
Sbjct: 326 LDDSDNAPGWKFSQWEMKGVPLRLEIGPKDLEKNQCVLVRRDTREKIFVSLDELETAIPA 385

Query: 441 RFSNNRPVL 449
           +    R  L
Sbjct: 386 QLEALRKDL 394


>gi|295664016|ref|XP_002792560.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226278674|gb|EEH34240.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 559

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 146/452 (32%), Gaps = 70/452 (15%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           P L+  P D  +      L T  +  +S G   +LP G   L+ + + +R +  + G  E
Sbjct: 68  PTLR--PADHRVVGTAQDLFTTSV--YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFRE 123

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTD 116
           +  P++    LW  SG + +Y  +M  +  R             D++    P +      
Sbjct: 124 VLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGASGETAEGEIGEDESYGLKPMNCPGHCL 183

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F+S   SYR LP  +       R+E+     G+ R R F   D + F   P+       
Sbjct: 184 LFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGSEIE 242

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                   + +  G     +   + P      S E    A+                   
Sbjct: 243 SALRFTDTVMNTFGFNKYRLVLSTRPERDFIGSIELWDSAERQLRDALEKNGRSWELNEG 302

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +   +   I +                       DS  +  ++S   +++     F   Y
Sbjct: 303 DGAFYGPKIDMQVQ--------------------DSDGKFHQLSTIQLDMNLPQRFELGY 342

Query: 295 SLPMSATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++            GK   V +     G++    A++  +++G    WP  ++P +  ++
Sbjct: 343 AVAEGEEDYNPATPGKAMPVLIHRAIFGSLERFFALLIENYNG---RWPFWLSPRQGIIL 399

Query: 353 NIKAHD---QVCRDACEKI------------------YARLS-----KVGCDVFWDDMGE 386
            +   +   Q   DA  KI                     L      +    +  D    
Sbjct: 400 TVSQDEKLVQAAEDAATKISGYPVHRNGELNSNSNSTAQPLKPISPAQTTFRIDVDTSAR 459

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            +G +   A  + + L  ++G K + D  ++I
Sbjct: 460 SLGKKIREAKKMKYNLIFVLGEKNLGDGSIDI 491


>gi|168334910|ref|ZP_02693030.1| prolyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 570

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/231 (41%), Positives = 134/231 (58%), Gaps = 1/231 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P++A+  SH  +LR G I Q + G+++ L   QK   N+  IIREE
Sbjct: 1   MLLSKLLGERFKEKPQEAKSISHIFLLRGGYIRQVANGLFTMLLPAQKVKVNIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+  P +   +LW ESGR++S G E+LR+ DR DK ++ G THEE    + RS
Sbjct: 61  MNKIDGQEVIFPVVLPGELWQESGRFESVGSELLRMKDRTDKDLVLGMTHEEAAVHLARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY   PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E     Y+K   +
Sbjct: 121 EAKSYTQYPFMIYQIQTKFRDEARSRGGLIRVREFTMKDAYSFHTSNEDLDAYYDKCLKA 180

Query: 181 YLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           Y  I+ R G+   + + ++SG +GG++SHEF++LAD GE  +         
Sbjct: 181 YNEIYRRTGVPEVVCVESDSGMMGGNVSHEFMLLADIGEDTIVVCDSCGYM 231



 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 1/185 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K    RGIEVG+IF  GTKY+  M  T+   DGK     MG YGIG  R+
Sbjct: 387 EGQCCPNCNGKLTFKRGIEVGNIFKLGTKYTDVMKMTYVDQDGKSKTPIMGCYGIGVGRL 446

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A+ IE+ HD  G IWP S+AP+++ +  +K+          +IY +LS+   +V +DD 
Sbjct: 447 IASAIEAHHDDYGPIWPISIAPWQVHICALKSKTMDINAIGAEIYGKLSQE-FEVIFDDR 505

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G   G QFA ADLLG P+++++G K + +  VEI  R   I++ ++ E+V    +     
Sbjct: 506 GAAPGVQFADADLLGVPVRIVLGEKNLKNGNVEIVTRDKSIKKLIAKEDVYEEVAAIIRE 565

Query: 445 NRPVL 449
            +  L
Sbjct: 566 LQQRL 570


>gi|313237616|emb|CBY12760.1| unnamed protein product [Oikopleura dioica]
          Length = 1692

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 141/433 (32%), Gaps = 76/433 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  +D ++ +   + + + G+I  +   G Y  LP      +++           G    
Sbjct: 1183 EAKKDEDLPTWFQQTITKAGLIEYYDVSGCYVLLPPSYNIWEHIKDFFDMNIKDLGVENC 1242

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E    + +  E+  +    D    + +   PT E VM  I+    +S
Sbjct: 1243 YFPMFVSQAALEKEKEHIEDFAPEVAWVTRSGDTELAEPIAIRPTSETVMYPIYAKRCQS 1302

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T             + + +
Sbjct: 1303 HRDLPIKMNQWCNVVRWEFKHPTPFLRTREFLWQEGHSAFATKA----------EAEVEV 1352

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  +   I                             +P   T  +    
Sbjct: 1353 MQILDL-YRKVYEDLLAI---------------------------ATVPGRKTVKEKFAG 1384

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    + R I+     + G  +S   + +F+ 
Sbjct: 1385 GDYTTTVEAYIKA--------------------AGRAIQGATSHHLGQNFSKMFNISFED 1424

Query: 305  A---DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-----IKA 356
                 G   +    S+GI   R +  +I    D KG++ P  V+ ++  ++         
Sbjct: 1425 ESKGKGIKEFAYQNSWGIT-TRTIGVMIMVHADDKGLVIPPKVSRYQAVIVPCGATKTDE 1483

Query: 357  HDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +AC+ +  +L   G     D    ++ G +F   +L G PL++ VG K +  + 
Sbjct: 1484 DKNKLFNACKALENQLKSFGIRAHADLRDDKKPGWKFNDWELKGVPLRIEVGPKDLEANS 1543

Query: 416  VEIKHRLTGIRED 428
                 R T  +  
Sbjct: 1544 AVFVRRDTLEKVT 1556


>gi|169335721|ref|ZP_02862914.1| hypothetical protein ANASTE_02141 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258459|gb|EDS72425.1| hypothetical protein ANASTE_02141 [Anaerofustis stercorihominis DSM
           17244]
          Length = 478

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 145/429 (33%), Gaps = 72/429 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +T M+     KG     P G    +N+ A   +    TG   M  P L        E 
Sbjct: 25  ITKTEMVDYAPVKGFMVIRPYGYALWENIQAAFDKRFKETGHQNMYFPLLIPESFLNKEK 84

Query: 84  GRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    +  +       PT E ++  ++   +KSYR LPF + Q     
Sbjct: 85  EHVEGFAPEVAWVTHGGENELAERLCIRPTSETIICSMYAKWLKSYRQLPFLYNQWANVV 144

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E         +R FL    +   L  EG                              
Sbjct: 145 RWEKT-------TRPFLRTSEF---LWQEG------------------------------ 164

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                   H      +  + +     D           +  +      +V    +     
Sbjct: 165 --------HTVHATFEEAQEETLQMIDIY--------REICEDYLAMPVVVGQKSEKEKF 208

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  H     ++L  + +     ++ G        ++      F   + K+ Y    S+G+
Sbjct: 209 AGAHATYTIEALMHDGQ----ALQSGTSHNLADHFAKAFGIKFLNKEEKEQYAYSTSWGV 264

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + R++  +I    D  G+++P  +AP ++ +I I  H +   D   ++  +LS     V
Sbjct: 265 -STRLIGGIIMVHGDDYGLVFPPKIAPTQVVIIPIAQHKEGVLDKANELKNKLSD--LRV 321

Query: 380 FWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             DD  E    G +F   ++ G P+++ +G K + + +  I  R T  +  +SL+EV N 
Sbjct: 322 LLDD-NEAYSPGWKFNQWEMKGVPVRIEIGPKDIENGQCVIARRDTSEKISVSLDEVENK 380

Query: 438 ASHRFSNNR 446
                   +
Sbjct: 381 VKELLDEIQ 389


>gi|291087823|ref|ZP_06572117.1| proline--tRNA ligase [Clostridium sp. M62/1]
 gi|291073860|gb|EFE11224.1| proline--tRNA ligase [Clostridium sp. M62/1]
          Length = 493

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 152/441 (34%), Gaps = 78/441 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + AE+  +             KG     P G    +N+   +      TG 
Sbjct: 34  FAQWYTDVVKKAELVDYS----------SVKGCMVIKPDGYAIWENIQKELDRRFKETGV 83

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSH 121
             + +P      L   E    + +  E+  +         + M   PT E +  D +   
Sbjct: 84  QNVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGLEPLQERMCVRPTSETLFCDFYARD 143

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP  + Q     R E +     +RSREFL ++ ++   T E ++     M   Y
Sbjct: 144 IQSYRDLPKLYNQWCSVVRWE-KTTRPFLRSREFLWQEGHTAHATAEEAEERTELMLNLY 202

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        + A     G     E    A+              + I +   D   
Sbjct: 203 ADFCEE-------VLAMPVIRGRKTDKEKFAGAEAT------------YTIEALMHDGKA 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + S  S         A                                FG ++S      
Sbjct: 244 LQSGTSHNFGDGFAKA--------------------------------FGIQFS------ 265

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K  YV   S+G+   R++ A+I    D  G++ P  +AP ++ ++ I+   +  
Sbjct: 266 --DKDNKLKYVHQTSWGM-TTRLIGAIIMVHGDDSGLVLPPRIAPTQVVIVPIRQQAEGV 322

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   LS  G  V  DD  +  G +F+ +++ G P++V +G K +  ++  +  R
Sbjct: 323 LDKAYELKDILS--GFSVKVDDSDKSPGWKFSESEMRGIPVRVEIGPKDLEQNQAVLVRR 380

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  +SL+E+    +   
Sbjct: 381 DTHEKITVSLDEIKEKVTELL 401


>gi|294056086|ref|YP_003549744.1| prolyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293615419|gb|ADE55574.1| prolyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 506

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 162/455 (35%), Gaps = 89/455 (19%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-L 79
           ++ +++   + + S   G     P G    +N+   +      TG      P       L
Sbjct: 21  YQQVVKAADLAETSPVRGCMVIKPWGYAIWENIQRELDRRFKETGHKNAYFPLFIPMSFL 80

Query: 80  WVESGRYDSYGKEMLRLA------DRN---------DKAMIYGPTHEEVMTDIFRSHIKS 124
             E+   + + KE   +       D +         ++ +I  PT E ++ ++F   ++S
Sbjct: 81  QKEADHVEGFAKECAVVTHSRLEADEDGKLQPAGPLEEPLIVRPTSETIIGELFSKWVQS 140

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E+R R   +R+ EFL ++ ++   T E +     KM    L +
Sbjct: 141 YRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTVHATSEEAMEETRKM----LEV 195

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +       + M   +G              +  E + F   D   F I +   D      
Sbjct: 196 YADFAESYMAMPVITG--------------EKTEAERFPGADAT-FAIEAMMQD------ 234

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                              + ++ G   + G  ++      +  
Sbjct: 235 ----------------------------------RKALQAGTSHFLGQNFAKSSDIKYLS 260

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---C 361
           A+GK+ Y    S+G+ + R+V  +I +  D  G++ P  +AP  + +I +   ++     
Sbjct: 261 AEGKEEYAWTTSWGV-STRLVGGLIMTHSDDDGLVLPPRIAPSHVVIIPVTPKEETRQQV 319

Query: 362 RDACEKIYARLSKV-----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D C ++  +L           V +DD   + G +       G P++V VG + + +  V
Sbjct: 320 LDYCLELKQQLEAQSFLDGRVKVEFDDRDMRGGEKAWGWIKKGIPVRVEVGPRDMENGSV 379

Query: 417 EI--KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  + R    ++ +  +E +N  S      +  L
Sbjct: 380 FVGRRDRAPKDKQGIPRDEFVNGVSALLDEIQDNL 414


>gi|258620049|ref|ZP_05715089.1| prolyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|258587782|gb|EEW12491.1| prolyl-tRNA synthetase [Vibrio mimicus VM573]
          Length = 459

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  K   +  RGIEVGHIF  GT YS  M
Sbjct: 254 DGKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSAKM 313

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
           +     ++GK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +  H 
Sbjct: 314 NCGVLDSNGKNAILEMGCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHK 373

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  VI+G + + +   E
Sbjct: 374 SERVQEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTVIIGDRSMDEGHFE 433

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++E +I++   + +
Sbjct: 434 YKNRRNGEKEAVAMESIIDFIQAKLA 459



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/112 (52%), Positives = 78/112 (69%)

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           ++T + R+ + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + 
Sbjct: 1   MITALVRNEVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQK 60

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           SY+ M  +Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +  S
Sbjct: 61  SYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVFS 112


>gi|302671729|ref|YP_003831689.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
 gi|302396202|gb|ADL35107.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
          Length = 634

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/479 (15%), Positives = 154/479 (32%), Gaps = 79/479 (16%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ + ++QE   RD +    +L L   M  + + G+  WLP G K    +    RE Q R
Sbjct: 177 KHHIKMIQEALERDHKKIGAELDLF--MFDETAPGMPYWLPRGWKMYQALLKYSREIQER 234

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------------------- 98
            G  E++ P + +  LW+ SG +  Y   M  +                           
Sbjct: 235 HGYTEIAAPLVNNKKLWLISGHWAHYVNNMFMVPGVSGWLKADAEIPGILENNNDPTEEP 294

Query: 99  --------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                           +  M   P +       ++    SY+ LP  + +  +  R E  
Sbjct: 295 KNIKIQAGSVIYNREQNDTMAAKPMNCPNAMMTYKRTNHSYKELPIRYSEYDVLHRKEKS 354

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +  G+ R +EF   D ++F +     K     +      I+   G+        + P  
Sbjct: 355 GQMNGLFRVQEFRQDDDHTFVM-ESQIKEEIADVIAIADEIYSTFGVTYR-AELSTRPED 412

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E    A+    ++   K                        E      A      
Sbjct: 413 FMGDIEVWNRAEAALKEILDEKY------------------GEGGYEINEGDGAFYGPKI 454

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAM 322
           + ++ D+L    +     ++      FG         T++  DG     V +     G++
Sbjct: 455 DLQIKDALGREWQCGTVQLDFQLPHNFG--------LTYQAQDGTMQMPVVIHRAIYGSL 506

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                +I  +  G    W   ++P+++ ++ I+       +  +++   L   G  V  D
Sbjct: 507 ERFIGIIIENFKGVFPFW---LSPYQVGIVPIRL---EHNEYAKEVEQALMNAGIRVEAD 560

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-EDMSLEEVINYASH 440
                +  +         P  ++VG K  ++  V I  R +  + +++ L+ ++     
Sbjct: 561 YSDNNMKEKIKKFKNYKDPYILVVGDKEAAERTVSINVRGSNKQVQNVPLDALVAMCKK 619


>gi|291535914|emb|CBL09026.1| prolyl-tRNA synthetase, family II [Roseburia intestinalis M50/1]
          Length = 567

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/279 (36%), Positives = 141/279 (50%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 1   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITRKIEQILRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 60  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 120 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 179

Query: 180 SYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +Y RIF R G+   + + ++SG +GG LSHEF++L   GE  +    +           +
Sbjct: 180 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNECDFRANMEAAEN 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             DI       E           + +   F         
Sbjct: 240 ISDIARDAVSAELEKVHTPDIHTIEDICKFFGDETCNSC 278



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 11/259 (4%)

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    GL +  +    GP+G  ++ + IVL D        S +  +      N D     
Sbjct: 320 ITEECGLNAGYI----GPVGLKINGDAIVLYDR-------SLENRNNLSCGANEDEYHYK 368

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+   +   A Y   +  +   +     +     +RGIEVG+IF  G KY+  M  T+ 
Sbjct: 369 GLDMQRDVPDAEYHDFAKAYEGGICPKCGKKTIRISRGIEVGNIFQLGDKYTRAMKMTYV 428

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +G+     MG YGIG  R+ AAV E+ HD  G IWP S+AP+++ L  ++A ++  R 
Sbjct: 429 DQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGPIWPKSIAPWQVHLCAVRADNEEVRK 488

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y +L ++G +V +DD     G  F+ ADLLG PL+VIV  + +    VE+  R  
Sbjct: 489 FADDLYEKLQEIGIEVIYDDRTVSAGVMFSDADLLGIPLRVIVSPRNMKQGVVEVASRDK 548

Query: 424 GIREDMSLEEVINYASHRF 442
            ++  + +EE         
Sbjct: 549 TLQTQVKMEEAAEQVKKYL 567


>gi|256786722|ref|ZP_05525153.1| threonyl tRNA synthetase [Streptomyces lividans TK24]
 gi|289770616|ref|ZP_06529994.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289700815|gb|EFD68244.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 421

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 150/420 (35%), Gaps = 43/420 (10%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G+  WLP G      +   +RE + R G   +  P L   +L+  SG ++ Y  +M 
Sbjct: 36  MGAGLPYWLPDGAVVRHTLEEYVREAERRAGYRHVYSPVLGKRELYEISGHWEHYRDDMF 95

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSR 153
              +   + ++  P+       ++RS  +SYR LP    ++   +R E      G+ R R
Sbjct: 96  PPMELGAEEVVLRPSLCPHHALVYRSRARSYRELPLRIAELGAMYRSEPSGVLGGLSRVR 155

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              + DA+ F  TP+ +            R    LG+++   R      GG         
Sbjct: 156 AIHLNDAHIF-CTPDQAAAEARAALGLIRRAHADLGIRAARHRLSLPGPGG--------- 205

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                      K   D  +    T   +        E      A      + ++ D+   
Sbjct: 206 -----------KYVADPELWRRATALLEEALDGLPYEAVEGEAAFYGPKIDVQIEDAAGR 254

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESS 332
              +S   I+      FG +Y         G DG  H   M     IG++    A +  +
Sbjct: 255 ESTLSTVQIDFHQPERFGLRY--------LGPDGARHRPVMVHRSVIGSVERAVAHLIEA 306

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD--MGEQIGS 390
           H G    W   +AP ++ ++ +       R+A   +  + + +G      D   G  +G+
Sbjct: 307 HGGAFPAW---LAPVQLVVLPVAG---AQREAAYALVRQATDLGLRAEVADPERG-SLGA 359

Query: 391 QFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +   A     P Q ++G++   D   V+++ R       +S  E+++  + R     P L
Sbjct: 360 RVRAA--RKVPYQAVIGAREAQDGDLVDVRLRDGRRPGQLSGTELLHRITDRVEARGPEL 417


>gi|167536887|ref|XP_001750114.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771443|gb|EDQ85110.1| predicted protein [Monosiga brevicollis MX1]
          Length = 550

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 129/432 (29%), Gaps = 64/432 (14%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L   +E   +A    H+ + R       H  S G   +LP G +    +  +IRE+ 
Sbjct: 177 KKMLKDHKELLAEAAKRDHRKIGREQELFFFHDLSPGSCFFLPRGARIYRTLMEMIREQY 236

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + + +LW  SG +  Y + +        +     P +      +F   
Sbjct: 237 IKRGFSEVVTPNIFNKNLWETSGHWQHYQENIFSFEVEK-EIFAMKPMNCPSHCIMFGHR 295

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP  F    +  R+EL     G+ R R F   DA+ F   PE  +         
Sbjct: 296 KRSYRELPLRFADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CEPEQIEEEIKGCLDF 354

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P       E    A++       S        P +   + 
Sbjct: 355 LNEVYGIFGFEF-ELHLSTRPEKYLGEIEVWNRAESALESALNSCGHPWSINPGDGAFYG 413

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I +                   E+                                  
Sbjct: 414 PKIDIKVTDALRRQHQVRPLCCSGERDL-------------------------------- 441

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                               +   + A++     GK   WP  ++P +  +I +      
Sbjct: 442 ------------------WASPLRMFAILCEHTGGK---WPFWLSPRQAIVIPVAPQ--- 477

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +  +++ A        +  DD     +  +   A +  +    +VG    +   V ++
Sbjct: 478 YNEYAKEVQAFFHLKDYAIDIDDSTATQLQKKVRNACVAHYNFIFVVGDSEANHKTVNVR 537

Query: 420 HRLTGIREDMSL 431
            R   +R  + L
Sbjct: 538 TRDGQLRGTLGL 549


>gi|145594337|ref|YP_001158634.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|189083512|sp|A4X5V6|SYP_SALTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145303674|gb|ABP54256.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 595

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 136/227 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F   L   P  +E   H+L+ R  M+ Q  +GI+++LPLG + +  + A++R E
Sbjct: 1   MKMSTMFGATLHTAPGRSESEGHQLLQRAAMLRQVGQGIFAYLPLGWRTIRKIEAVLRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+S+P +  A+LW ++GRY + G E+ R  DR  + ++   THEE++T + RS
Sbjct: 61  LERVGGQEVSMPVVNPAELWKQTGRYFTIGPELARFRDRRGRDLVLAMTHEELVTFLGRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR+LP   +Q+Q KFRD+ RPR G++R REF+MKDAYSFD+   G    Y   + +
Sbjct: 121 EIESYRHLPRMVFQLQTKFRDDPRPRAGLIRVREFVMKDAYSFDVDAAGLAARYRAQYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           YL IF R GL    + ++ G +GG L+HEF+ L   GE  +      
Sbjct: 181 YLTIFRRCGLPVAAVLSDVGMMGGSLAHEFVYLTPIGEDTLLICDSC 227



 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 99/179 (55%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            +   ++  +ARG+EVG IF  GT+YS  + A +  ADG+   + MG YGIG  R++A +
Sbjct: 399 CAECGSELRTARGVEVGQIFKLGTRYSTALGAEYLDADGQRKPLTMGCYGIGVGRLLACL 458

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E   D +G+  P ++AP+++ L  +        +   ++Y  L   G +V +DD  E+ 
Sbjct: 459 AEEHRDERGLRLPVTIAPYQVHLTLLDDLASAAGELARRVYDELWAAGVEVLFDDRDERA 518

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           G +FA AD++G PL+V +G + V++   E++ R TG+   +  +EV+     R +  R 
Sbjct: 519 GVKFADADVIGLPLRVTIGRRSVANGAAEVRDRATGVTAQVPFDEVVAELVRRIAALRA 577


>gi|321248511|ref|XP_003191154.1| proline-tRNA ligase [Cryptococcus gattii WM276]
 gi|317457621|gb|ADV19367.1| proline-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 740

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 147/436 (33%), Gaps = 75/436 (17%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVES 83
           +L+  M+  +   G Y   P        +     +E  + G  +   P  + SA L  E 
Sbjct: 254 LLKGEMLDYYDISGCYILRPWSFSIWQIIQNWFDDEIKKLGVQDCYFPMFVSSARLEKEK 313

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I S+R+LP    Q     
Sbjct: 314 DHIEGFAPEVAWVTKAGSSDLEEHIAIRPTSETVMYPYYAKWINSHRDLPLKLNQWNSVV 373

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  L    +             +   L L    +  + 
Sbjct: 374 RWEFKNPQPFLRTREFLWQEGHTAFLDKADADKE----------VLDILEL-YRKVYEDI 422

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +                             IP + ++ +     +             
Sbjct: 423 LAV---------------------------PVIPGKKSEKEKFAGGDYTTTVEGFIPT-- 453

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK--DHYVQMGSY 317
                             + RGI+     + G  +S     T +  D      Y    S+
Sbjct: 454 ------------------TGRGIQAATSHHLGQNFSKMFDITVESPDKSQGRLYAYQNSW 495

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACEKIYARL 372
           G+ + R +  ++    D +G++ P  VA  +++++ +        +Q   DAC K+   L
Sbjct: 496 GL-STRSLGVMVMVHGDDQGLVLPPRVALQQVAIVPVGLSKGEGKNQPIYDACLKLEREL 554

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMS 430
              G     D   G   G +F   ++ G PL++ +G + ++++  + ++      +  M 
Sbjct: 555 VAAGIRAKADLREGYTPGWKFNDWEMRGVPLRLELGPRDIANNSTLSVRRYDN-HKAPMP 613

Query: 431 LEEVINYASHRFSNNR 446
           L ++ N       + +
Sbjct: 614 LSDIGNTVRTYLDDIQ 629


>gi|21222189|ref|NP_627968.1| threonyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|10432482|emb|CAC10316.1| putative threonyl tRNA synthetase [Streptomyces coelicolor A3(2)]
          Length = 430

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 156/443 (35%), Gaps = 50/443 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           RD     H+ + R   +         G+  WLP G      +   +RE + R G   +  
Sbjct: 25  RDH---DHRRLGRELALFDTDPLMGAGLPYWLPDGAVVRHTLEEYVREAERRAGYRHVYS 81

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L   +L+  SG ++ Y  +M    +   + ++  P+       ++RS  +SYR LP  
Sbjct: 82  PVLGKRELYEISGHWEHYRDDMFPPMELGAEEVVLRPSLCPHHALVYRSRARSYRELPLR 141

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++   +R E      G+ R R   + DA+ F  TP+ +            R    LG+
Sbjct: 142 IAELGAMYRSEPSGVLGGLSRVRAIHLNDAHIF-CTPDQAAAEARAALGLIRRAHADLGI 200

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           ++   R      GG                    K   D  +    T   +        E
Sbjct: 201 RAARHRLSLPGPGG--------------------KYVADPELWRRATALLEEALDGLPYE 240

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + ++ D+      +S   I+      FG +Y         G DG  H
Sbjct: 241 AVEGEAAFYGPKIDVQIEDAAGRESTLSTVQIDFHQPERFGLRY--------LGPDGARH 292

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M     IG++    A +  +H G    W   +AP ++ ++ +       R+A   + 
Sbjct: 293 RPVMVHRSVIGSVERAVAHLIEAHGGAFPAW---LAPVQLVVLPVAG---AQREAAYALV 346

Query: 370 ARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIR 426
            + + +G      D   G  +G++   A     P Q ++G +   D   V+++ R     
Sbjct: 347 RQATDLGLRAEVADPERG-SLGARVRAA--RKVPYQAVIGVREAQDGDLVDVRLRDGRRP 403

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             +S  E+++  + R     P L
Sbjct: 404 GQLSGTELLHRITDRVEARGPEL 426


>gi|288932452|ref|YP_003436512.1| prolyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894700|gb|ADC66237.1| prolyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 475

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 163/440 (37%), Gaps = 83/440 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  I+Q+    AEI           I    KG+Y W P G K    V   +RE  +
Sbjct: 8   FSEWFHEIIQQ----AEIMD---------IRYPVKGLYVWFPFGFKIRRLVYDKLREIMD 54

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
                E+  PTL    +L  ES     +  E+  +     ++ D  +   PT E  M  +
Sbjct: 55  -RDHEEVYFPTLIPETELGKESEHIKGFEDEVFWVTHGGLEKLDVKLALRPTSETAMYPM 113

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNK 176
           F+  I+S+ +LP   YQI   FR E +    ++R RE    K+A++     E ++ +   
Sbjct: 114 FKLWIRSHADLPLRVYQIVNVFRYETKHTRPLIRLREITSFKEAHTAHRNYEEAEENVRL 173

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y   +  L +  + +R    P                       K        + +
Sbjct: 174 AVSLYKEFYDFLAIPYLILR---RPE--------------------WDKFPGADYTIAFD 210

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T   D  ++        A   A +     +  D        +  GI              
Sbjct: 211 TVMPDGRTMQIGTVHHLADNFAKTFDIKYETPDGDHAYVHQTCYGI-------------- 256

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                                   + R +AA+I    D  G++ P  V+P +I +I I  
Sbjct: 257 ------------------------SERCIAALISIHGDDLGLVLPFEVSPVQIVIIPILY 292

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K  ++   D  +++Y +L   G  V  DD  E+ G+++   +L G P+++ +G K    +
Sbjct: 293 KGKEEEVMDLSKRVYEKLKGYGFRVVLDDTDERPGAKYYKWELKGVPIRIEIGPKEAERN 352

Query: 415 KVEIKHRLTGIREDMSLEEV 434
           +  +  R   +++ +S+EE+
Sbjct: 353 EAVVSFRDEKVKKSLSVEEL 372


>gi|269115191|ref|YP_003302954.1| Prolyl-tRNA synthetase [Mycoplasma hominis]
 gi|268322816|emb|CAX37551.1| Prolyl-tRNA synthetase [Mycoplasma hominis ATCC 23114]
          Length = 477

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 147/425 (34%), Gaps = 67/425 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M +  +KG   + PL     +N+ A +  E  + G   + +P L    L   E    + +
Sbjct: 28  MAYGATKGCIIFKPLAYSIWENIQAKMDIEFKKRGVQNVYLPLLIPESLLQKEKNHVEGF 87

Query: 90  GKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
             E+  + +       +     PT E +  D+F++ + SY +LP  + Q     R E + 
Sbjct: 88  NPELATVTEVGGKKLAEKFFIRPTSETLFADLFKNEVSSYNDLPIIYNQWVNVLRWE-KT 146

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
               +R+REFL ++ ++   + E +      M     +++                    
Sbjct: 147 TNPFLRTREFLWQEGHTIHSSSEEAIEFAKTMH----KVYKD------------------ 184

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                              ++     +    TD +     +      +            
Sbjct: 185 ----------------VIEENLAIPVVEGCKTDHEKFAGADITYTLESM----------- 217

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + ++ G   Y G  ++     TFK  + K       S+G    R++
Sbjct: 218 ----------MKDGKALQSGTSHYLGQNFTKAFDITFKNNENKLINPYGTSWG-TTTRLI 266

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            A+I +  D +GII P  +A  ++ ++ I  + D+       ++   L         D  
Sbjct: 267 GALIMTHGDDRGIIIPPKIARTQVDILEIFNSKDERVHKLALELKDALLAKNIVANIDSS 326

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  G + A +++ G PL++ +G K + ++ V    R    +   ++ E  N AS     
Sbjct: 327 NKGPGFKAANSEIHGTPLRIEIGPKDIENNSVLFVRRDNLEKITSTIAEAANIASLLLQK 386

Query: 445 NRPVL 449
            +  L
Sbjct: 387 IQDNL 391


>gi|296110087|ref|YP_003617036.1| prolyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295434901|gb|ADG14072.1| prolyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 451

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 157/451 (34%), Gaps = 82/451 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+++  IL+     AEI           +    KG   +LP G K       I+ + 
Sbjct: 1   MEFSEWYSEILE----RAEIYD---------VRYPIKGCGVYLPYGFKIRKYTFEILSKL 47

Query: 61  QNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRN----DKAMIYGPTHEEVMT 115
            + +G  ++  P L    L  + G     +  E+  +        D  +   PT E  + 
Sbjct: 48  LDESGHEQVLFPLLIPETLLAKEGEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETAIY 107

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            + +  +K + +LP   YQI   FR E +    ++R RE                     
Sbjct: 108 YMLKLWVKVHTDLPIKLYQIVNTFRYETKHTRPLIRLREI-------------------- 147

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                                     +    +H      +  E QV  +           
Sbjct: 148 --------------------------MTFKEAHTAHATKEEAEKQVKEAI--------GI 173

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F D + +  ++ +           +        P+      R I++G +   G  +S
Sbjct: 174 YKKFFDTLGIPYLIIKRPEWDKFPGADYTIAFDTIFPDG-----RAIQIGTVHNLGQHFS 228

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+   G   Y     YGI + R +A++I    D KG+  P  VAP ++ +I + 
Sbjct: 229 KTFEIEFETPTGDKDYAYQTCYGI-SDRAIASIIAIHGDEKGLKLPPVVAPIQVVIIPLI 287

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K  +++  +  +++  RL +    V  DD   + G ++   ++ G PL++ +G + + +
Sbjct: 288 FKGKEEMVINKAKEVAERLKE--YRVHIDDRDIRPGKKYYDWEIKGVPLRIDIGPRDIEE 345

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            K+ +  R TG +  +   E+         +
Sbjct: 346 GKITLVRRDTGEKIVIEESELEEKVRETLED 376


>gi|119719726|ref|YP_920221.1| prolyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|152112960|sp|A1RYD8|SYP_THEPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119524846|gb|ABL78218.1| prolyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 482

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 158/437 (36%), Gaps = 71/437 (16%)

Query: 24  KLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           +++ + G++    + +G     P   + +  +     EE  +TG   +  P +   +   
Sbjct: 20  QVLSKAGLVDLRYNVQGFVVHKPWLMRIIKAIYRFFEEELEKTGHEPVLFPLVIPEENFE 79

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +     ++ ++ +   PT E     ++   I+S+R+LP   YQ  
Sbjct: 80  KEKEHVEGFKPEVFWVTQAGDEKLERRLALRPTSETAFYYMYSYWIQSWRDLPLKLYQSV 139

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +R+E +    ++R                                     G + + + 
Sbjct: 140 SVYRNE-KNTRPLIR-------------------------------------GREFLWIE 161

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A          H+     +    Q+    +     I               +   +    
Sbjct: 162 A----------HDAFATHEEALNQIREDMENSRKVI------------WEKLGIPFLFLR 199

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               D  +        +      R +++      G +++   + TF   DGK  YV    
Sbjct: 200 RPPWDKFSGAEDTYAADTIMPDGRVLQISSTHDLGQRFAKAFNVTFLDKDGKRKYVWQTC 259

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLS 373
           YG G  R+ AA+I    D KG++ P +VAP ++ ++ I   +   +   + C K+ A + 
Sbjct: 260 YGPGIWRITAALIAIHGDDKGLVLPMNVAPIQVVIVPIYYKESDKERVLEKCRKLEAMIR 319

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G  V+ D   E   G +F   +L G P+++ VG + V    V +  R   ++E ++  
Sbjct: 320 EAGYRVYLDAREEYTPGWKFNDWELKGVPVRLEVGVREVETGTVTVFRRDLRVKEKVADS 379

Query: 433 EVINYASHRFSNNRPVL 449
           E+I++     ++    L
Sbjct: 380 ELISHIRKLENDILEEL 396


>gi|225561384|gb|EEH09664.1| threonyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 577

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 156/458 (34%), Gaps = 70/458 (15%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D  +   +  L   +  Q+S G   +LP G   L+ + + +R +  + G +E+  P++
Sbjct: 87  PADHRVVGTEQELF--VTSQYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSI 144

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------DKAMIYGPTHEEVMTDIFRSH 121
               LW  SG + +Y  +M  +  RN             D++    P +      +F+S 
Sbjct: 145 YKKSLWKVSGHWQNYKDDMYEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQ 204

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F   P+            
Sbjct: 205 NHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGSEIESALKF 263

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +    G ++  +   + P      S E    A+                        
Sbjct: 264 TDTVMRTFGFENYRLVLSTRPEKDFIGSVELWDSAERQLRDALEKSGRSWE--------- 314

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + ++ DS  +  ++S   +++     F  +Y++P  
Sbjct: 315 -----------LNHGDGAFYGPKIDMQIQDSDGKFHQLSTIQLDMNLPQRFELEYAVPEG 363

Query: 300 ATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                 +  GK   V +     G++    A++  +++G    WP  ++P +  ++ +   
Sbjct: 364 EEDYNPETPGKAVPVLIHRAIFGSLERFFALLIENYNG---RWPFWLSPRQGIILTVSQD 420

Query: 358 DQVCRDACEKIYAR------LSKVG------------------CDVFWDDMGEQIGSQFA 393
           +++ + A +           LS  G                    +  D     +G +  
Sbjct: 421 EKLLQAADDAAAKMSGYQRVLSSSGDANSTTGPPKPLSPARTTFRIDLDTSARSLGKKIR 480

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            A  + + L  ++G K + D  V++     G +  M+L
Sbjct: 481 EAKKMKYNLIFVLGEKNLVDGSVDV---DLGGQMMMTL 515


>gi|240274490|gb|EER38006.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H143]
          Length = 550

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 151/445 (33%), Gaps = 67/445 (15%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D  +   +  L   +  Q+S G   +LP G   L+ + + +R +  + G +E+  P++
Sbjct: 88  PADHRVVGTEQELF--VTSQYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSI 145

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------DKAMIYGPTHEEVMTDIFRSH 121
               LW  SG + +Y  +M  +  RN             D++    P +      +F+S 
Sbjct: 146 YKKSLWKVSGHWQNYKDDMYEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQ 205

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F   P+            
Sbjct: 206 NHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGSEIESALKF 264

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +    G ++  +   + P      S E    A+                        
Sbjct: 265 TDTVMRTFGFENYRLVLSTRPEKDFIGSVELWDSAERQLRDALEKSGRSWE--------- 315

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + ++ DS  +  ++S   +++     F  +Y++P  
Sbjct: 316 -----------LNHGDGAFYGPKIDMQIQDSDGKFHQLSTIQLDMNLPQRFELEYAVPEG 364

Query: 300 ATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                 +  GK   V +     G++    A++  +++G    WP  ++P +  ++ +   
Sbjct: 365 EEDYNPETPGKAVPVLIHRAIFGSLERFFALLIENYNG---RWPFWLSPRQGIILTVSQD 421

Query: 358 DQVCRDACEKIYAR------LSKVG------------------CDVFWDDMGEQIGSQFA 393
           +++ + A +           LS  G                    +  D     +G +  
Sbjct: 422 EKLLQAADDAAAKMSGYRRVLSSSGDANSTTGPPKPLSPARTTFRIDLDTSARSLGKKIR 481

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEI 418
            A  + + L  ++G K + D  V++
Sbjct: 482 EAKKMKYNLIFVLGEKNLVDGSVDV 506


>gi|218884312|ref|YP_002428694.1| prolyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218765928|gb|ACL11327.1| prolyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 479

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/441 (21%), Positives = 166/441 (37%), Gaps = 76/441 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F    Q   ++A +           I    KG+Y W+P G KAL     II +   +TG 
Sbjct: 15  FPEWYQAVLKEAGVID---------IRYPVKGMYVWMPYGLKALRLTQRIIVDLLEKTGH 65

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFRSH 121
            E   PT+    ++  E      +G E       +  R ++ +   PT E VM  ++   
Sbjct: 66  QEAYFPTMVPESVFSREKDFLQGFGGETFIVEGTMTRRFNERLFVRPTSETVMYYMWNMW 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           IK  ++LP   YQ+   FR E +    ++R RE                           
Sbjct: 126 IKGRKDLPLKMYQVVNVFRYETKMTHPILRVREI-------------------------- 159

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               +G   +H      +  E Q+  +             +F +
Sbjct: 160 --------------------MGFIEAHTAHHSREEAEKQIIEAI--------GIYKEFFN 191

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            + L   + +           +N      +P+ K     G+E+G +   G K++      
Sbjct: 192 RLQLPYFIVKTPPWDTFAGAEYNYDFITVMPDGK-----GLELGSVINLGQKFAGAFEIK 246

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQV 360
           F   DG++ YV    YG+ + RV+ AVI    D  G+ +P  +AP ++ ++ I K  ++ 
Sbjct: 247 FMDTDGEEKYVYQTCYGV-SERVLGAVIGIHGDEVGLFFPPEIAPIQVVIVPIMKPGEKE 305

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   KI + L   G  VF D D+    G ++   ++ G P ++ VG++ V  S V I 
Sbjct: 306 ILEYALKIGSMLESHGLRVFIDSDLEHTPGWKYYYWEMKGVPTRIEVGAREVETSTVTIA 365

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R    ++ + LEEV+     
Sbjct: 366 RRDKREKQVVRLEEVLETLRK 386


>gi|238484021|ref|XP_002373249.1| threonyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220701299|gb|EED57637.1| threonyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 526

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 146/443 (32%), Gaps = 67/443 (15%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
             P D         L T  I  +S G   +LP G   ++ + + +R +  + G  E+  P
Sbjct: 57  ATPADYRALGTAQDLFTTSI--YSPGSPLFLPNGTHVINKLVSFLRTQYLQYGFREVLTP 114

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSH 121
           T+    LW  SG + +Y  +M  +  R            D++    P +      +F+S 
Sbjct: 115 TIYKRSLWEVSGHWQNYKDDMYEVRGRGAMGETEGEAGEDESYGLKPMNCPGHCLLFKSQ 174

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F   P+  K         
Sbjct: 175 NHSYRELPIRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIF-CRPQQIKSEIASALGF 233

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +    GL    +   + P      S E    A++   +   +          +    
Sbjct: 234 VDMVMTTFGLGPYRLVLSTRPEKDFIGSLELWDSAESQLREALDNSGREWALNEGDG--- 290

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + +L D   +  ++S   +++     FG +Y +   
Sbjct: 291 -----------------AFYGPKIDIQLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEG 333

Query: 300 ATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    G+   V +     G++    A++   + G    WP  ++P +  ++ +   
Sbjct: 334 EEDYNPATPGRARPVLVHRANFGSIERFLALLIEQYAG---RWPFWLSPRQGIVLTVNQ- 389

Query: 358 DQVCRDACEKIYARLSKVGCDVF-----------------------WDDMGEQIGSQFAV 394
           D+       +  A++S  G                            DD  + +G +   
Sbjct: 390 DEKVLQQAHEAAAKIS--GFRALEPGQSGNNAPQPLSFVDSTFLIDVDDSPQTLGKKIQR 447

Query: 395 ADLLGFPLQVIVGSKFVSDSKVE 417
           A  + +    IVG K V++S+V 
Sbjct: 448 AKQMKYNFIFIVGPKDVAESRVT 470


>gi|169767186|ref|XP_001818064.1| threonyl-tRNA synthetase [Aspergillus oryzae RIB40]
 gi|83765919|dbj|BAE56062.1| unnamed protein product [Aspergillus oryzae]
          Length = 526

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 146/443 (32%), Gaps = 67/443 (15%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
             P D         L T  I  +S G   +LP G   ++ + + +R +  + G  E+  P
Sbjct: 57  ATPADYRALGTAQDLFTTSI--YSPGSPLFLPNGTHVINKLVSFLRTQYLQYGFREVLTP 114

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSH 121
           T+    LW  SG + +Y  +M  +  R            D++    P +      +F+S 
Sbjct: 115 TIYKRSLWEVSGHWQNYKDDMYEVRGRGAMGETEGEAGEDESYGLKPMNCPGHCLLFKSQ 174

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F   P+  K         
Sbjct: 175 NHSYRELPIRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIF-CRPQQIKSEIASALGF 233

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +    GL    +   + P      S E    A++   +   +          +    
Sbjct: 234 VDMVMTTFGLGPYRLVLSTRPEKDFIGSLELWDSAESQLREALDNSGREWALNEGDG--- 290

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + +L D   +  ++S   +++     FG +Y +   
Sbjct: 291 -----------------AFYGPKIDIQLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEG 333

Query: 300 ATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    G+   V +     G++    A++   + G    WP  ++P +  ++ +   
Sbjct: 334 EEDYNPATPGRARPVLVHRANFGSIERFLALLIEQYAG---RWPFWLSPRQGIVLTVNQ- 389

Query: 358 DQVCRDACEKIYARLSKVGCDVF-----------------------WDDMGEQIGSQFAV 394
           D+       +  A++S  G                            DD  + +G +   
Sbjct: 390 DEKVLQQAHEAAAKIS--GFRALEPGQSGNNAPQPLSFVDSTFLIDVDDSPQTLGKKIQR 447

Query: 395 ADLLGFPLQVIVGSKFVSDSKVE 417
           A  + +    IVG K V++S+V 
Sbjct: 448 AKQMKYNFIFIVGPKDVAESRVT 470


>gi|154282499|ref|XP_001542045.1| hypothetical protein HCAG_02216 [Ajellomyces capsulatus NAm1]
 gi|150410225|gb|EDN05613.1| hypothetical protein HCAG_02216 [Ajellomyces capsulatus NAm1]
          Length = 582

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 75/458 (16%), Positives = 156/458 (34%), Gaps = 70/458 (15%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D  +   +  L   +  Q+S G   +LP G   L+ + + +R +  + G +E+  P++
Sbjct: 92  PADHRVVGTEQELF--VTSQYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSI 149

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------DKAMIYGPTHEEVMTDIFRSH 121
               LW  SG + +Y  +M  +  RN             D++    P +      +F+S 
Sbjct: 150 YKKSLWKVSGHWQNYKDDMYEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQ 209

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F   P+            
Sbjct: 210 NHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGSEIESALKF 268

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              +    G ++  +   + P      S E    A+                        
Sbjct: 269 TDTVMRTFGFENYRLVLSTRPEKDFIGSVELWDSAERQLRDALEKSGRSWE--------- 319

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + ++ DS  +  ++S   +++     F  +Y++P  
Sbjct: 320 -----------LNHGDGAFYGPKIDMQIQDSDGKFHQLSTIQLDMNLPQRFELEYAVPEG 368

Query: 300 ATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                 +  G+   V +     G++    A++  +++G    WP  ++P +  ++ +   
Sbjct: 369 EEDYDPETPGRAVPVLIHRAIFGSLERFFALLIENYNG---RWPFWLSPRQGIILTVSQD 425

Query: 358 DQVCRDACEKIYAR------LSKVG------------------CDVFWDDMGEQIGSQFA 393
           +++ + A +           LS  G                    +  D     +G +  
Sbjct: 426 EKLLQAADDAAAKMSGYWRVLSSSGDANSTPAPPKPLSPARTTFRIDLDTSARSLGKKIR 485

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            A  + + L  ++G K + D  V++     G +  M+L
Sbjct: 486 EAKKMKYNLIFVLGEKNLVDGSVDV---DLGGQMMMTL 520


>gi|240103108|ref|YP_002959417.1| prolyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|239910662|gb|ACS33553.1| Prolyl-tRNA synthetase (proS) [Thermococcus gammatolerans EJ3]
          Length = 483

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 155/430 (36%), Gaps = 71/430 (16%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
           ++L+   G+I      KG+  WLP G K + N+   I  E  RTG  E+  P L    + 
Sbjct: 18  NELLETAGIIDKRYPVKGMNVWLPYGLKIMRNIEKFIHSEMARTGHEEVLFPALIPETEF 77

Query: 80  WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     +  E+  +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI
Sbjct: 78  QKEAEHIKGFEDEVYWVTHAGLDPLDVRLILRPTSETAMYSMFSLWIRSHADLPFKVYQI 137

Query: 136 QLKFRDELRPRFGVMRSREFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E +    ++R RE     +A++  +  E ++    +    + R+   L L  + 
Sbjct: 138 VNVYRYETKHTRPLIRVREISRFFEAHTAHVDFEDAERQIKEDLEIFDRLAKFLALPYVI 197

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R                                    P  +       SL + +     
Sbjct: 198 SRR-----------------------------------PDWDKFPGAFYSLGAEIMMPDG 222

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                  +HN K   +   N +      +  ++                           
Sbjct: 223 RTLQIGTMHNYKQNFAKAYNIQYETETGDHEYVHQ------------------------- 257

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--DACEKIYARL 372
            ++G+ + R++AAVI    D  G++ P ++AP ++ ++ I   D          +I   L
Sbjct: 258 TTFGM-SERLLAAVIAVHGDDSGMVLPPTIAPIQVVIVPIPKKDANVDVFAYAREIAEEL 316

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G  V  D+   + G ++   +L G PL++ VG + V   K  +  R T  +  +  +
Sbjct: 317 GKAGFRVHVDERDIRPGRKYYDWELKGVPLRIEVGPRDVEGRKAVLARRDTFEKVTVERD 376

Query: 433 EVINYASHRF 442
            ++       
Sbjct: 377 AIVEEVKKTL 386


>gi|168187192|ref|ZP_02621827.1| prolyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294885|gb|EDS77018.1| prolyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 478

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 153/447 (34%), Gaps = 77/447 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             KG     P G    +N+   +  +  
Sbjct: 14  MDEDFAKWYTDIVKKAELVDYA----------SVKGCMIIRPYGYAIWENIQKYLDNKFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     D   + +   PT E +  D 
Sbjct: 64  ETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTQGGNDTLAERLCVRPTSETLFCDH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+S+ +LP  + Q     R E +     +R+ EFL ++ ++   T E S      M
Sbjct: 124 YAKIIQSHNDLPKKYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTAHATAEESARETIDM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y        + +IP+                +     E + F       + I S   
Sbjct: 183 LNVYANFCE--NVLAIPV----------------IKGQKTEKEKFAGAKAT-YTIESLMH 223

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + S  S         A     +++                 ++ ++          
Sbjct: 224 DGKALQSGTSHNFGDNFSKAFNIQYNDKNS---------------QLQYVHQ-------- 260

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                             S+G+   R++ A+I    D  G+  P  +AP ++ ++ I  H
Sbjct: 261 -----------------TSWGV-TTRLIGAIIMVHGDDSGLKLPPRIAPLQVVIVPIAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  E++  R+SKV   V  D   +  G +F   ++ G P+++ VG K + +++V 
Sbjct: 303 KEGVLDKAEELRERISKV-ARVKVDSSDKMPGWKFNEYEMKGVPVRLEVGPKDIENNQVV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           +  R T  +  +S++E+          
Sbjct: 362 LVRRDTREKIFVSMDELETKIPELLDE 388


>gi|118444161|ref|YP_878835.1| prolyl-tRNA synthetase [Clostridium novyi NT]
 gi|152016596|sp|A0Q2I3|SYP_CLONN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118134617|gb|ABK61661.1| prolyl-tRNA synthetase [Clostridium novyi NT]
          Length = 478

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 153/447 (34%), Gaps = 77/447 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             KG     P G    +N+   +  +  
Sbjct: 14  MDEDFAKWYTDIVKKAELVDYA----------SVKGCMIIRPYGYAIWENIQKYLDTKFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     D   + +   PT E +  D 
Sbjct: 64  ETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTQGGNDTLAERLCVRPTSETLFCDH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+S+ +LP  + Q     R E +     +R+ EFL ++ ++   T E S      M
Sbjct: 124 YAKIIQSHNDLPKKYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTAHATAEESAKETIDM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y        + +IP+                +     E + F       + I S   
Sbjct: 183 LNVYANFCE--NVLAIPV----------------IKGQKTEKEKFAGAKAT-YTIESLMH 223

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + S  S         A     +++                 ++ ++          
Sbjct: 224 DGKALQSGTSHNFGDNFSKAFNIQYNDKNS---------------QLQYVHQ-------- 260

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                             S+G+   R++ A+I    D  G+  P  +AP ++ ++ I  H
Sbjct: 261 -----------------TSWGV-TTRLIGAIIMVHGDDSGLKLPPRIAPLQVVIVPIAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  E++  R++KV   V  D   +  G +F   ++ G P+++ VG K + +++V 
Sbjct: 303 KEGVLDKAEELRQRIAKV-ARVKVDSSDKMPGWKFNEYEMKGVPVRLEVGPKDIENNQVV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           +  R T  +  +S++E+          
Sbjct: 362 LVRRDTREKIFVSMDELETKIPELLDE 388


>gi|304373385|ref|YP_003856594.1| Threonyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309576|gb|ADM22056.1| Threonyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 581

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 152/447 (34%), Gaps = 40/447 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + FL ILQE   RD      +L L T       +G   WL  G K ++ +   I     +
Sbjct: 168 EEFLHILQERKERDHRKLGKELKLFT-FNKLFGQGFPIWLEDGMKIVNKIKEKILFYDKK 226

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P      L+  SG +  Y ++M        + +I  P        +F +  K
Sbjct: 227 YGFKEVFTPHFGEQKLYEISGHFTHYKEDMFGALVVEGENLIPRPMTCPHHIILFDTFKK 286

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP+   +    +R E      G+ R R  L+ + + F          +  ++    
Sbjct: 287 SYRELPYRISEQSRLYRYEKSGALTGLERVRSMLLTEGHIFVAKT-QIVDEFKHLYQMIS 345

Query: 183 RIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +     ++   +      P   +   +   + +  E+ +       +  +     ++ +
Sbjct: 346 EVLKFFKIEVNYVSFSKRDPENKEKFFDDDQMWNQAESDL-------EKVLKELGVEYQE 398

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I   +           T   H                       I      + LP    
Sbjct: 399 KIGEAAFYGPKIDFQIKTVLNHEI--------------------TISTLQLDFLLPKKFD 438

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +F   D  K+  + +    IG      +++     G   I P  ++P +  +I I   +
Sbjct: 439 ISFINQDNAKETPILIHRGLIGTYERFVSILLEQTKG---ILPFWLSPKQFVVIPI--EN 493

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +I  +L ++  +V  DD  E+I  +   A +     Q+IVG + V +  +  
Sbjct: 494 SKHSDFALEIAKKLEELNFNVTVDDRNERINKKIREAQMQKTKFQIIVGDQEVENKNITY 553

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++ E++I +   +  NN
Sbjct: 554 REYGQQNSNTLNFEDLIKFIKAKIENN 580


>gi|254447045|ref|ZP_05060512.1| prolyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198263184|gb|EDY87462.1| prolyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 522

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 104/246 (42%), Positives = 142/246 (57%), Gaps = 1/246 (0%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGP 108
            L  V AI+REE N  G +E+ +PT+Q  +LW ESGR + YG E+LRL+DR+++   YGP
Sbjct: 1   MLKKVEAIVREEMNSAGGVELLMPTIQPTELWQESGRLEQYGPELLRLSDRHERPFCYGP 60

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           THEEV+TD+ R  IKSY+ LP  FYQIQLKFRDE+RPRFGVMR+REF+MKDAYSF L  +
Sbjct: 61  THEEVITDLARREIKSYKQLPVNFYQIQLKFRDEIRPRFGVMRAREFVMKDAYSFHLDAD 120

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +++Y  M+ +Y  IF RLGL+   + A++G IGG+ SHEF VLAD+GE  +       
Sbjct: 121 SLQNTYEAMYRAYSNIFTRLGLRFRAVHADTGSIGGNASHEFHVLADSGEDAIAFC-PDS 179

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D+    E  +     +            A       E L          + + + V    
Sbjct: 180 DYAANVELAECLAPSAERPTATAAMEKTATPQAKTIEDLCQQFDLTASQTIKTLIVEASE 239

Query: 289 YFGTKY 294
                +
Sbjct: 240 ECDADF 245



 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D         +        +D+ N +  D  P+        RGIEVGHIF  GTKYS  M
Sbjct: 318 DGFHWFGAHWERDVDLPELADLRNIQAGDPSPDGAGHIEIVRGIEVGHIFQLGTKYSESM 377

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
            AT    +GKD  + MG YGIG  RV+AA IE +HD KGI+WPD++APFK++++ +    
Sbjct: 378 GATVLDENGKDSVMTMGCYGIGVTRVIAAAIEQNHDNKGIVWPDNIAPFKLAIVPLNQNK 437

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  RD  E++Y +    G DV  DD   + G +FA  +L+G P +++VG + + +  +E
Sbjct: 438 SERVRDYAEELYRQCQSKGIDVVLDDRDARPGVKFADIELVGIPHRIVVGDRGLDNGALE 497

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K R      D+ L+++        
Sbjct: 498 YKGRGDADSRDIPLDQLDELLQSLV 522


>gi|330723715|gb|AEC46085.1| threonyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 581

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 152/447 (34%), Gaps = 40/447 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + FL ILQE   RD      +L L T       +G   WL  G K ++ +   I     +
Sbjct: 168 EEFLHILQERKERDHRKLGKELKLFT-FNKLFGQGFPIWLEDGMKIVNKIKEKILFYDKK 226

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P      L+  SG +  Y ++M        + +I  P        +F +  K
Sbjct: 227 YGFKEVFTPHFGEQKLYEISGHFAHYKEDMFGALVVEGENLIPRPMTCPHHIILFDTFKK 286

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP+   +    +R E      G+ R R  L+ + + F          +  ++    
Sbjct: 287 SYRELPYRISEQSRLYRYEKSGALTGLERVRSMLLTEGHIFVAKT-QIVDEFKHLYQMIS 345

Query: 183 RIFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +     ++   +      P   +   +   + +  E+ +       +  +     ++ +
Sbjct: 346 EVLKFFKIEVNYVSFSKRDPENKEKFFDDDQMWNQAESDL-------EKVLKELGVEYQE 398

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I   +           T   H                       I      + LP    
Sbjct: 399 KIGEAAFYGPKIDFQIKTVLNHEI--------------------TISTLQLDFLLPKKFD 438

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +F   D  K+  + +    IG      +++     G   I P  ++P +  +I I   +
Sbjct: 439 ISFINQDNAKETPILIHRGLIGTYERFVSILLEQTKG---ILPFWLSPKQFVVIPI--EN 493

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +I  +L ++  +V  DD  E+I  +   A +     Q+IVG + V +  +  
Sbjct: 494 SKHSDFALEIAKKLEELNFNVTVDDRNERINKKIREAQMQKTKFQIIVGDQEVENKNITY 553

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++ E++I +   +  NN
Sbjct: 554 REYGQQNSNTLNFEDLIKFIKAKIENN 580


>gi|158314451|ref|YP_001506959.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158109856|gb|ABW12053.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 428

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 140/434 (32%), Gaps = 48/434 (11%)

Query: 22  SHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R   +         G+  WLP G      +   IR  + R G   +  P L   
Sbjct: 15  DHRKLGRELDLFDTDPLIGAGLPYWLPDGAAVRHTLEEYIRTAERRAGYQHVYSPVLGKR 74

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +L+  SG +  Y  +M    D   + ++  P+       I+RS   SYR+LP    ++  
Sbjct: 75  ELYEISGHWSHYSDDMFPPMDLGGEQIVLRPSLCPHHALIYRSRSHSYRDLPLRIAELGG 134

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            +R EL     G+ R R   + DA+ F  T +                +  LG+     R
Sbjct: 135 MYRSELSGVLGGLTRVRAIHLNDAHIF-CTLDQVADEARNALDMIRHAYEALGITPRRYR 193

Query: 197 AESGPIGGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                 GG      E    +    T V                                 
Sbjct: 194 LSLPGPGGKYVAAPELWQRSTALLTDVLDQAGLPYEAAEG-------------------- 233

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A      + ++ D       +S   ++                  + G D   H   M
Sbjct: 234 EAAFYGPKIDVQIIDGAGRESTLSTIQVDFHQPEQ--------FDLHYIGPDSARHRPVM 285

Query: 315 -GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                IG++    A +   H G    W   +AP +I ++ I    ++   A   +  + +
Sbjct: 286 VHRSIIGSVERAVAHLIEQHGGAFPAW---LAPTQIVVLPIT-DSELPNAAA--LARQCT 339

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +G        + G  +G++   + L   P Q ++G++  +D  + ++ R     +    
Sbjct: 340 DLGLRAQIIGPERG-SLGARVRQSKL--VPYQAVIGAQESTDGHIALRLRDGHRLDPQPT 396

Query: 432 EEVINYASHRFSNN 445
            ++++  S     +
Sbjct: 397 GDILSRISALIEAH 410


>gi|293363452|ref|ZP_06610209.1| threonine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552972|gb|EFF41725.1| threonine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 580

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 153/443 (34%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL++   RD      ++ L         +G+  WL  G    + +  ++ +   + G
Sbjct: 169 YLEILKDRKERDHRKIGKEMKLFA-FSKLSGQGLPIWLEDGMAIHNEIKNLVLKMDKKYG 227

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG    Y  +M +      + +I  P         +    +SY
Sbjct: 228 FREVLTPHFGEETLYKISGHLAHYKDDMFKPIVVEGERLIPRPMTCPHHIICYNMEKRSY 287

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +    +R E      G+ R R  L+ + + F L P+  +  +  M+      
Sbjct: 288 RDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHIF-LRPDQIESEFKTMYALIKET 346

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              L +K   +                   D  + + +   D M     ++     D   
Sbjct: 347 LDLLKIKINYISLSLR--------------DKEDKEKYFDDDKMWNSSEAQLRKVLD--D 390

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           LN   E+     A      + ++F SL     +S   ++    F   +++       +  
Sbjct: 391 LNIEYEEKIGEAAFYGPKIDIQIFTSLGHEITISTLQLD----FLLPSRF----EMKYTD 442

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++    +   G IG      A +     G    W   +AP ++++I +  H+    +
Sbjct: 443 KDGEEKTPVLLHRGLIGTYERFVATLLEQTKGNLPFW---LAPKQVTVIPV--HEINNYE 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L         DD  E++  +   A +     Q+I+G K      +  +    
Sbjct: 498 YAKEVNEFLFANDIRTKLDDREERLSKKMREAQISKSKYQLILGDKEQESKTISYRKYGE 557

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                 SLE+ +   ++     R
Sbjct: 558 DSTTTTSLEKFLEMLNNDKKAYR 580


>gi|26553728|ref|NP_757662.1| threonyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|26453735|dbj|BAC44066.1| threonyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 566

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 151/434 (34%), Gaps = 33/434 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD       + +     +   +G+  WLP G+     +   +    ++   + +
Sbjct: 161 MEEIKSRDHRKIGQDMEIF-DFSNDIGQGLPIWLPNGEIIKKEIKKFLWSIFSKEKFLFI 219

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L S +L+++SG ++ Y +      + +++  +  P         F     SY+ LP
Sbjct: 220 DTPILGSKELYIKSGHWEHYKENNFPPMEVDNETFMLRPMTCPHHLTYFNLKPHSYKELP 279

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +   +     R E      G+ R R   + D +     P+  +    ++      +  R+
Sbjct: 280 YAICEDSKLHRYESSGGLIGLERVRTMELFDCHII-TKPDQIEDVIRQLNNILKIVHKRM 338

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +K   +                   D  +   +   D M      +  D   +  LN  
Sbjct: 339 NIKIDRVDLSLR--------------DPKDKVKYHDDDKMWKSSEKQLRDI--LKKLNYK 382

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +     A      + ++  +L +   +S   ++    F    ++       +   +  
Sbjct: 383 AMEIEGEAAFYGPKIDFQVKTNLGKIITISTIQLD----FLLPERF----DVEYIDENNT 434

Query: 309 DHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                +  +G+        A + S   G   + P  +AP +IS+I +  +  +  D C+K
Sbjct: 435 KKRPVLIHFGVIGTYERFIATLLSQTKG---LLPFWLAPVQISIIPVNNN--IHLDYCKK 489

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I + L +    V  DD  E++  +   A +   P Q+++G   + ++++  +        
Sbjct: 490 IASELEENNIRVKLDDSNERLAKKIREAQISKIPFQLVIGDNEIKNNEITYRKYSEENST 549

Query: 428 DMSLEEVINYASHR 441
            +   E I++    
Sbjct: 550 TLKFNEFIDFIKKL 563


>gi|229823364|ref|ZP_04449433.1| hypothetical protein GCWU000282_00662 [Catonella morbi ATCC 51271]
 gi|229787139|gb|EEP23253.1| hypothetical protein GCWU000282_00662 [Catonella morbi ATCC 51271]
          Length = 479

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 75/454 (16%), Positives = 163/454 (35%), Gaps = 82/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L  +Q+    A++  +  +           G   + P G +  +++   +     
Sbjct: 8   FSKWYLQTIQQ----ADLMDYSPVR----------GCMIFKPDGYEIWEHIQKAMDARFK 53

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             G      P L     +  E    + +  E+  + +    + ++ +   PT E ++ D 
Sbjct: 54  EEGIRNAYFPMLIPESFFNKEKDHIEGFSPELPWVTEAAGEKLEERLALRPTSETIIGDA 113

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F + I+SYR+LP    Q    FR E +     +R+ EFL ++ ++     + +     +M
Sbjct: 114 FSNWIQSYRDLPLEINQWANVFRWEKK-TLPFLRTSEFLWQEGHTAHADGQEALDRTMRM 172

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y  +    G+ ++P+                V  +   ++ F       F I +   
Sbjct: 173 LQIYKEVVE--GVLAVPV----------------VDGEKTPSERFAGAVST-FSIEAMMQ 213

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + +  S         A                                F  +Y   
Sbjct: 214 DGKAVQAGTSHYMGTKFAEA--------------------------------FDIRY--- 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
                   D +  Y    S+G+ + R++ A+I +  D KG++ P +VAP ++  + +   
Sbjct: 239 -----LNTDNEHVYAHTSSFGV-STRLIGAMIMTHGDDKGLVLPPAVAPTQVVFVPVGPW 292

Query: 357 -HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    D   ++ A+L   G     DD     G +F   +L G P+++  G + + +++
Sbjct: 293 QKNPAILDKIHELQAQLKAAGIRCRVDDSNNSPGFKFNEWELRGVPVRIECGPRDLENAQ 352

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V +K R    +  +  +  +       ++ +  L
Sbjct: 353 VMMKARDLDDKVAVPFDNFLASVQAELASMQGRL 386


>gi|170584765|ref|XP_001897164.1| bifunctional aminoacyl-tRNA synthetase [Brugia malayi]
 gi|158595450|gb|EDP34004.1| bifunctional aminoacyl-tRNA synthetase, putative [Brugia malayi]
          Length = 1572

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 157/458 (34%), Gaps = 76/458 (16%)

Query: 2    RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREE 60
            +++K  L + +E    AE  S +++++  MI  +   G Y   P      + V      E
Sbjct: 1086 KQTKLGLDVKKEE-NLAEWYS-QIIIKADMIEYYDVSGCYILRPWSFAIWEIVKKWFDTE 1143

Query: 61   QNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMT 115
              + G      P   S + L  E    D +  E+  +         + +   PT E VM 
Sbjct: 1144 IKKCGVRNCYFPIFVSQNGLQREKEHIDDFAPEVAWVTRAGNSELSEPIAIRPTSETVMY 1203

Query: 116  DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
              +   I+SYR+LP    Q     R E +     +R+REFL ++ ++   T +       
Sbjct: 1204 PSYAKWIQSYRDLPIRLNQWCNVVRWEFKHPTPFLRTREFLWQEGHTAFQTKQ------- 1256

Query: 176  KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                +   +F  L L                                             
Sbjct: 1257 ---EAEEEVFAILDL--------------------------------------------Y 1269

Query: 236  NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               + D+ ++  I  + +             +   +P N     RGI+     + G  +S
Sbjct: 1270 AKVYTDLFAIPVIKGRKSEKEKFAGGEFTTTVEAYVPVNG----RGIQGATSHHLGQNFS 1325

Query: 296  LPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +F+  + GK  +    S+G+   R + A+I    D  G++ P  VAP ++ +I +
Sbjct: 1326 KMFDISFEDPETGKKTFAWQNSWGMT-TRTIGAMIMIHSDNDGLVLPPRVAPIQVIIIPV 1384

Query: 355  KAHDQVCRDACE-------KIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIV 406
                Q+     +       +I   L      V  D       G +F   +L G P+++ +
Sbjct: 1385 GIASQMHNKIKQEIITKIEEIIKTLENSKIRVDIDLRDNYSPGWKFNHWELKGVPIRLEL 1444

Query: 407  GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G K +  S+V    R    +  + ++ ++   S     
Sbjct: 1445 GPKDIEKSQVTCVTRYNKHKSVIPIDNLLAKCSELLDE 1482


>gi|229496735|ref|ZP_04390446.1| prolyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316281|gb|EEN82203.1| prolyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 517

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 163/448 (36%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
             L+ +  +    + +G     P G    + + A + +    TG +    P       L 
Sbjct: 44  QDLVTKADLAENSAVRGCMVIKPYGYAIWEKMQAELDKRFKETGHVNAYFPLFIPKSYLS 103

Query: 81  VESGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE   +                    + ++ +I  PT E ++   +++ I
Sbjct: 104 READHVEGFAKECAVVTHYRLKNSPDGSGVVVDPEAKLEEELIVRPTSETIIWSTYKNWI 163

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E       MR+R FL    + +                   
Sbjct: 164 QSYRDLPVLCNQWANVVRWE-------MRTRLFLRTAEFLWQ------------------ 198

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                     E      T E  V  ++  ++        DF + 
Sbjct: 199 --------------------------EGHTAHATREEAVAEAEKMLEVY-----GDFAEK 227

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +    ++    +     +   +    ++L ++     + ++ G   + G  ++      F
Sbjct: 228 VLAVPVIRGVKSETERFAGAVDTYTIEALMQDG----KALQSGTSHFLGQNFAKAFDVYF 283

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--- 359
              +G+   V   S+G+ + R++ A+I S  D  G++ P S+AP ++ ++ I   ++   
Sbjct: 284 LNKEGQRELVWATSWGV-STRLMGALIMSHSDDNGLVLPPSLAPIQVVIVPIYKTEEHLA 342

Query: 360 VCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             R+  E +   L   G  V  DD   ++ G +FA  +L G P+++ +G++ +    VE+
Sbjct: 343 TIRERVEPLIKDLRARGISVKLDDNDNKKPGWKFAEYELKGIPVRLALGARDLEQGTVEV 402

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E ++ E + ++      + +
Sbjct: 403 ARRDTLTKETVAFEGIADHIESLLQSIQ 430


>gi|114600756|ref|XP_001153674.1| PREDICTED: threonyl-tRNA synthetase isoform 5 [Pan troglodytes]
          Length = 641

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 128/371 (34%), Gaps = 42/371 (11%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYR 365

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F    
Sbjct: 366 KRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFDHRP 424

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +          
Sbjct: 425 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCLDFL 483

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P       E    A+                   +      
Sbjct: 484 RTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG----- 537

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + ++ D++    + +   ++    F    +++L     
Sbjct: 538 ---------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY--V 576

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +      C
Sbjct: 577 SHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP---TC 630

Query: 362 RDACEKIYARL 372
            +  +K + +L
Sbjct: 631 DEYAQKDFQKL 641


>gi|114152886|sp|O28664|SYP_ARCFU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 471

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 157/437 (35%), Gaps = 83/437 (18%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     E  + AEI           +    KG+Y W P G K    V + +RE  +    
Sbjct: 9   FSEWYHEVIQTAEIMD---------VRYPVKGLYVWFPFGFKIRQLVYSKLREIMD-REH 58

Query: 67  IEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSH 121
            E+  P L    +L  E      +  E+  +        D  +   PT E  M  +FR  
Sbjct: 59  DEVYFPALIPETELGKEGEHIKGFEDEVYWITHGGLTPLDVKLALRPTSETAMYPMFRLW 118

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVS 180
           ++++ +LP   YQI   FR E +    ++R RE    K+A++     E +     K    
Sbjct: 119 VRNHADLPLKVYQIVNTFRYETKHTRPLIRLREITSFKEAHTVHKDFEEAAEHVKKAI-- 176

Query: 181 YLRIFHRL-GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +       +IP                          V    ++  FP  +    F
Sbjct: 177 --GFYKEFYDFLAIPYM------------------------VIRRPEWDKFPGAAYTIAF 210

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D I                                     R +++G + +    ++    
Sbjct: 211 DTI---------------------------------MPDGRTLQIGTVHHLADNFARTFD 237

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAH 357
             ++  +G+ +Y     YGI + R +AA+I    D  G++ P  VAP +I +I I  K  
Sbjct: 238 IKYEAPNGEHYYAHQTCYGI-SERCIAALISVHGDDLGLVLPFEVAPVQIVIIPILYKGK 296

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++   +AC K+  +L      V  D+  ++ G+++   +L G P++  +G +        
Sbjct: 297 EEAVMEACRKLAEKLKA--FRVVLDEGEDRPGAKYYKWELKGVPIRFEIGPRDAEKGVAV 354

Query: 418 IKHRLTGIREDMSLEEV 434
           +  R    + ++ L+EV
Sbjct: 355 VSFRDEKRKFEVPLDEV 371


>gi|291538408|emb|CBL11519.1| prolyl-tRNA synthetase, family II [Roseburia intestinalis XB6B4]
          Length = 567

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 102/279 (36%), Positives = 141/279 (50%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 1   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITHKIEQILRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 60  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 120 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 179

Query: 180 SYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +Y RIF R G+   + + ++SG +GG LSHEF++L   GE  +    +           +
Sbjct: 180 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNECDFRANMEAAEN 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             DI       E           + +   F         
Sbjct: 240 ISDIARDAVSAELEKVHTPDIHTIEDICKFFGDETCNSC 278



 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 11/259 (4%)

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    GL +  +    GP+G  ++ + IVL D        S +  +      N D     
Sbjct: 320 ITEECGLNAGYI----GPVGLKINGDAIVLYDR-------SLENRNNLSCGANEDEYHYK 368

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+   +   A Y   +  +   +     +     +RGIEVG+IF  G KY+  M  T+ 
Sbjct: 369 GLDMQRDVPDAEYHDFAKAYEGGICPKCGKKTIRISRGIEVGNIFQLGDKYTKAMKMTYV 428

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +G+     MG YGIG  R+ AAV E+ HD  G IWP S+AP+++ L  ++A ++  R 
Sbjct: 429 DQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGPIWPKSIAPWQVHLCAVRADNEEVRK 488

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y +L ++G +V +DD     G  F+ ADLLG PL+VIV  + +    VE+  R  
Sbjct: 489 FADDLYEKLQEMGIEVIYDDRTVSAGVMFSDADLLGIPLRVIVSPRNMKQGVVEVASRDK 548

Query: 424 GIREDMSLEEVINYASHRF 442
            ++  + +EE         
Sbjct: 549 TLQTQVKMEEAAEQVKKYL 567


>gi|332299347|ref|YP_004441268.1| Prolyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176410|gb|AEE12100.1| Prolyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 494

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 161/448 (35%), Gaps = 85/448 (18%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +++ G+    S +G     P G    + +   +      TG      P       L  E+
Sbjct: 24  VVKAGLAENSSVRGCMVIKPYGYGIWEKMQQDLDRRFKETGHSNAYFPLFIPKSYLSREA 83

Query: 84  GRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              + + KE   +                    + ++ +I  PT E ++   +++ I+SY
Sbjct: 84  EHVEGFAKECAVVTHYRLRTNEAGDGVEVDPNAKLEEELIVRPTSETIIWSTYKNWIQSY 143

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP    Q     R E       MR+R FL    + +                      
Sbjct: 144 RDLPLLCNQWANVVRWE-------MRTRLFLRTAEFLWQ--------------------- 175

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                                  E      T E  +  ++  +         DF   +  
Sbjct: 176 -----------------------EGHTAHATQEEAIAEARKMI-----GVYEDFAREMLA 207

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             ++    +     +   +    +++ ++     + ++ G   + G  ++     TF   
Sbjct: 208 LPVIVGVKSETERFAGAIDTYTIEAMMQDG----KALQSGTSHFLGQNFAKAFDVTFLDK 263

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--- 362
           +G   YV   S+G+ + R+V A+I +  D  G++ P  +AP ++ ++ I   ++  +   
Sbjct: 264 EGNRDYVWATSWGV-STRLVGALIMAHSDDNGLVLPPRIAPIQVVIVPIYKSEEELQRIH 322

Query: 363 DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +KI + L + G  V  DD   ++ G +FA  ++ G P+++ +G + +    VE+  R
Sbjct: 323 ETADKIVSELRQHGVSVQIDDNDNKKPGWKFAEYEMKGVPVRLALGMRDLEHGTVEVARR 382

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
            T  +E M LE +  +      + +  L
Sbjct: 383 DTLTKETMPLEGISAHIEQLLEDIQSNL 410


>gi|225571168|ref|ZP_03780166.1| hypothetical protein CLOHYLEM_07256 [Clostridium hylemonae DSM
           15053]
 gi|225159999|gb|EEG72618.1| hypothetical protein CLOHYLEM_07256 [Clostridium hylemonae DSM
           15053]
          Length = 480

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 156/450 (34%), Gaps = 76/450 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R + F     +  R+AE+  +             KG  ++LP G    + + A + +   
Sbjct: 14  RDEDFAQWYTDVVREAELCDYS----------SVKGCLNYLPNGYAIWELIQADLDKRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
            TG   + +PTL   +L   E+   + +  E+  +     +R  + +   PT E +  D+
Sbjct: 64  ETGVENVYLPTLIPENLLEKEADHVEGFAPEVAWVTHGGMERLQERLCIRPTSETLFCDL 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SYR+LP  + Q     R E         +R FL    + +              
Sbjct: 124 WSKTVQSYRDLPKVWNQWNSVLRWEKT-------TRPFLRSREFLWQ------------- 163

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E   L  T E      +    F +  +  
Sbjct: 164 -------------------------------EGHTLHATYEE--AEERTIQMFHVYEDCY 190

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                I   S  +     +A   D +  +             + ++     +FG+ +   
Sbjct: 191 KETLAIPFVSGRKAEHEKFAGAQDTYTIEAL-------MHDGKALQSATSHFFGSGFPDA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   + + H     S+G  + R + A+I    D  G++ P  VAP +  +I I  H
Sbjct: 244 FDIKYVDKNNQLHSAYETSWG-WSTRSIGAIIMVHGDDSGLVLPPHVAPVECRIIPIAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +   L K G  V  DD  +  G +F+  ++LG P ++ +G K +  ++V 
Sbjct: 303 KEGVLDRANVLLDELKKAGYRVKIDDSEKSPGWKFSEQEMLGIPTRIEIGPKDIEKNQVV 362

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +  R T  +  +SL+E+           + 
Sbjct: 363 VVRRDTREKIIVSLDEIATKLRDILETIQE 392


>gi|303557|dbj|BAA03654.1| DrpA protein [Escherichia coli W3110]
          Length = 155

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 91/155 (58%), Positives = 116/155 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREF 155


>gi|16081463|ref|NP_393810.1| threonyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|22654139|sp|Q9HL99|SYT_THEAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10639503|emb|CAC11475.1| threonine--tRNA ligase related protein [Thermoplasma acidophilum]
          Length = 660

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 165/464 (35%), Gaps = 36/464 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTG----MIHQHSKGIYSWLPLGQKALDNVNAII 57
           +  K +L  L+E  R      H+ ++          + + G   +   GQ     + + +
Sbjct: 209 KLLKQYLNNLEEAKR----RDHRRIIAEMDLAVFNSEWAPGFPLYTQYGQTIRKELLSYM 264

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                + G  ++  P +    +W +SG Y  Y   M      +  +    P +      I
Sbjct: 265 DSMNRKNGWFDVWTPHVFRDTIWKQSGHYAKYRPNMYLFTLPDGDSYGIKPMNCPGHIAI 324

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F     SYR+LP  + +    +R E      G+ R R F   D ++F L  +        
Sbjct: 325 FSRRKYSYRDLPVRYSEPGTVYRYEKSGEVGGLTRPRAFTQDDGHAF-LRMDQIGDEIRT 383

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQVFCSKDFMDFPIP 233
           +      +F  L   +I +  +   I  D    +    V  + G          ++ P+ 
Sbjct: 384 LLTMVKDVFTIL-FGNIELSFDLSVIDRDHPENYLVSYVCRNCGYRIEGARGTDIECPVC 442

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYFGT 292
             +    D+   ++  EQ      +    + E   ++     ++     + +G ++   T
Sbjct: 443 HSHDLEPDLSVWDNATEQLRDALKSMGIEYKEYPGEAAFYGPKIDVHVKDAIGRMWQLST 502

Query: 293 ---KYSLP--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               + +P     T+  ++GK+   V +     G+   V A++   + GK   W   + P
Sbjct: 503 IQLDFFMPVNFGLTYTNSEGKEDRVVMIHRAIYGSYERVMAILLEHYAGKLPTW---LTP 559

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ--- 403
            +  ++ I ++     +    ++  L + G     D   E +  +     L+  P +   
Sbjct: 560 IQTYVVPISSN---FDEYARHVHEELIRHGIRSEIDTSQETVSKKIK---LI-HPYRPAY 612

Query: 404 -VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++VGSK +  + V  ++R  G  +  SL E I+         +
Sbjct: 613 IIVVGSKEMETNSVTARNR-EGKSKTYSLSEFIDVVKKEIEQRK 655


>gi|126466059|ref|YP_001041168.1| prolyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|126014882|gb|ABN70260.1| prolyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 493

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 88/430 (20%), Positives = 162/430 (37%), Gaps = 70/430 (16%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            EI  H  ++ T       KG+  W+P G KAL  +  I+      TG  E   PT+   
Sbjct: 33  HEILKHAKIVDT---RYPVKGMNVWMPYGLKALRMIQKIMINLLEETGHEEAYFPTMIPE 89

Query: 78  DLW-VESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            ++  E      +G E       +  + ++ +   PT E VM  ++   IK  ++LP   
Sbjct: 90  SVFSKEKDFLQGFGGETFVVEGTMTKKFNEKLFVRPTSETVMYYMWNIWIKGRKDLPLKM 149

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           YQ+   FR E +    ++R RE                                      
Sbjct: 150 YQVVNVFRYETKMTHPILRVREI------------------------------------- 172

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                    +    +H     ++  E Q+            S    F D + L   + + 
Sbjct: 173 ---------MSFIEAHTAHATSEEAEKQI--------NEALSIYKKFFDSLLLPYFIVKT 215

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                     +N     ++P+ K     G+E+G +   G K++      F  +DG   +V
Sbjct: 216 PPWDTFAGAEYNYDFITAMPDGK-----GLELGSVINLGQKFARAFDIKFMDSDGVTKHV 270

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
               YG+ + R + AVI    D KG+  P  +AP ++ ++ I   D+    +  +KI  +
Sbjct: 271 YQTCYGV-SERTLGAVIAIHGDQKGLFLPPIIAPIQVVIVPIARRDEQDIIEYAKKISEK 329

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L K G   F DD  E   G ++   ++ G P ++ +G + ++++ V I  R    +  +S
Sbjct: 330 LKKAGIRTFLDDDPEHTPGWKYYFWEMKGVPTRIEIGRRELNNNTVTIARRDGAKKITVS 389

Query: 431 LEEVINYASH 440
           + ++++    
Sbjct: 390 INDMVDKLRS 399


>gi|228471025|ref|ZP_04055869.1| prolyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|313885947|ref|ZP_07819685.1| proline--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|228307245|gb|EEK16268.1| prolyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|312924477|gb|EFR35248.1| proline--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 494

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 161/448 (35%), Gaps = 85/448 (18%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +++ G+    S +G     P G    + +   +      TG      P       L  E+
Sbjct: 24  VVKAGLAENSSVRGCMVIKPYGYGIWEKMQQDLDRRFKETGHSNAYFPLFIPKSYLSREA 83

Query: 84  GRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              + + KE   +                    + ++ +I  PT E ++   +++ I+SY
Sbjct: 84  EHVEGFAKECAVVTHYRLRTNEAGDGVEVDPNAKLEEELIVRPTSETIIWSTYKNWIQSY 143

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP    Q     R E       MR+R FL    + +                      
Sbjct: 144 RDLPLLCNQWANVVRWE-------MRTRLFLRTAEFLWQ--------------------- 175

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                                  E      T E  +  ++  +         DF   +  
Sbjct: 176 -----------------------EGHTAHATQEEAIAEARKMI-----GVYEDFAREMLA 207

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             ++    +     +   +    +++ ++     + ++ G   + G  ++     TF   
Sbjct: 208 LPVIVGVKSETERFAGAIDTYTIEAMMQDG----KALQSGTSHFLGQNFAKAFDVTFLDK 263

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--- 362
           +G   YV   S+G+ + R+V A+I +  D  G++ P  +AP ++ ++ I   ++  +   
Sbjct: 264 EGNRDYVWATSWGV-STRLVGALIMAHSDDNGLVLPPRIAPIQVVIVPIYKSEEELQRIH 322

Query: 363 DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +  +KI + L + G  V  DD   ++ G +FA  ++ G P+++ +G + +    VE+  R
Sbjct: 323 ETADKIVSELRQHGVSVQIDDNDNKKPGWKFAEYEMKGVPVRLALGMRDLEHGTVEVARR 382

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
            T  +E M LE +  +      + +  L
Sbjct: 383 DTLTKETMPLEGISAHIEQLLEDIQSNL 410


>gi|223041833|ref|ZP_03612022.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
 gi|223017360|gb|EEF15782.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 263

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 56  DGKHYFNVNWERDTAIPEIFDLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 115

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVAA IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 116 KATVQGEDGKPLIMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 175

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 176 KSEKVQAFAEELYKTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEI 235

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ E+++ + +    
Sbjct: 236 EYKNRRTGEKQMIAKEQLLAFLAENVK 262


>gi|226295138|gb|EEH50558.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 559

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 146/453 (32%), Gaps = 72/453 (15%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           P L   P D  +      L T  +  +S G   +LP G   L+ + + +R +  + G  E
Sbjct: 68  PTL--PPADHRVVGTAQDLFTTSV--YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFRE 123

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTD 116
           +  P++    LW  SG + +Y  +M  +  R             D++    P +      
Sbjct: 124 VLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGASGETAKGEIGEDESYGLKPMNCPGHCL 183

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F+S   SYR LP  +       R+E+     G+ R R F   D + F   P+       
Sbjct: 184 LFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGSEIE 242

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                   + +  G     +   + P      S E    A+                   
Sbjct: 243 SALRFTDTVMNTFGFNKYRLVLSTRPERDFIGSIELWDSAERQLRDALEKNGRSWELNEG 302

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +   +   I +                       DS  +  ++S   +++     F   Y
Sbjct: 303 DGAFYGPKIDMQVQ--------------------DSDGKFHQLSTIQLDMNLPQRFELGY 342

Query: 295 SLPMSATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++            GK   V +     G++    A++  +++G    WP  ++P +  ++
Sbjct: 343 AVAEGEEDYNPATPGKAMPVLIHRAIFGSLERFFALLIENYNG---RWPFWLSPRQGIIL 399

Query: 353 NIKAHDQVCRDACEKIYARLS-----KVG----------------------CDVFWDDMG 385
            +   D+    A E    ++S     + G                        +  D   
Sbjct: 400 TVSQ-DEKLLQAAEDAATKMSGYPVHRNGELNSNSNSTAQPLKPISPAQTTFRIDVDTSA 458

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             +G +   A  + + L  ++G K + D  ++I
Sbjct: 459 RSLGKKIREAKKMKYNLIFVLGEKNLGDGSIDI 491


>gi|225677700|gb|EEH15984.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 559

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 146/453 (32%), Gaps = 72/453 (15%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           P L   P D  +      L T  +  +S G   +LP G   L+ + + +R +  + G  E
Sbjct: 68  PTL--PPADHRVVGTAQDLFTTSV--YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFRE 123

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTD 116
           +  P++    LW  SG + +Y  +M  +  R             D++    P +      
Sbjct: 124 VLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGASGETAKGEIGEDESYGLKPMNCPGHCL 183

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F+S   SYR LP  +       R+E+     G+ R R F   D + F   P+       
Sbjct: 184 LFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGSEIE 242

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                   + +  G     +   + P      S E    A+                   
Sbjct: 243 SALRFTDTVMNTFGFNKYRLVLSTRPERDFIGSIELWDSAERQLRDALEKNGRSWELNEG 302

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +   +   I +                       DS  +  ++S   +++     F   Y
Sbjct: 303 DGAFYGPKIDMQVQ--------------------DSDGKFHQLSTIQLDMNLPQRFELGY 342

Query: 295 SLPMSATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++            GK   V +     G++    A++  +++G    WP  ++P +  ++
Sbjct: 343 AVAEGEEDYNPATPGKAMPVLIHRAIFGSLERFFALLIENYNG---RWPFWLSPRQGIIL 399

Query: 353 NIKAHDQVCRDACEKIYARLS-----KVG----------------------CDVFWDDMG 385
            +   D+    A E    ++S     + G                        +  D   
Sbjct: 400 TVSQ-DEKLLQAAEDAATKMSGYPVHRNGELNSNSNSTAQPLKPISPAQTTFRIDVDTSA 458

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             +G +   A  + + L  ++G K + D  ++I
Sbjct: 459 RSLGKKIREAKKMKYNLIFVLGEKNLGDGSIDI 491


>gi|310789927|gb|EFQ25460.1| threonyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 526

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 153/488 (31%), Gaps = 116/488 (23%)

Query: 16  RDAEIASHKLMLRTGMIHQH-------SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + ++  H+ +     I Q        S G   +LP G +  + +   +R +    G  E
Sbjct: 47  AEHDLPDHRKLG----IRQELFTTSVYSPGSPIFLPNGTRVFNRLVDFLRRQYVHYGFEE 102

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR----------------------------- 99
           +  P +    LW  SG   +Y  +M  +  R                             
Sbjct: 103 VITPNIYKKSLWERSGHLQNYADDMYTVTSRARAPEEKAAGCCGADGRSPPHEGSGETAR 162

Query: 100 ----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
                D      P +      IF S  +SYR+LP  F       R+E+     G+ R R 
Sbjct: 163 TAEGEDDDYGLKPMNCPGHCLIFASKTRSYRDLPIRFADFSPLHRNEISGALSGLTRVRR 222

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEF 210
           F   D + F   P   +    K       ++  LGL        + P    IG D   E 
Sbjct: 223 FHQDDGHIF-CRPIQIREEVFKTLDFMKTVYGALGLDYFDFALSTRPADHYIGTDAEWE- 280

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                 G+ +    +  + + +   +  F                        +  L DS
Sbjct: 281 ---RAEGQLRDALEQAGLKYTVKEGDGAFYG-------------------PKIDVMLHDS 318

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSA----------TFKGAD-------GKDHYVQ 313
             ++ +     ++    F    +++L   A            + AD       G    V 
Sbjct: 319 HGKSHQAGTIQLD----FQLPQRFNLEYKAPAPKLEAQGLPLEKADPAELETYGSVTPVM 374

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  + A++   + GK   WP  + P +  ++ +   + V R    +I   L+
Sbjct: 375 VHRAILGSVERLMALLIEEYKGK---WPFWLNPRQCVILTLNDTEPVVR-WASEIKDTLT 430

Query: 374 KV---------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                            G  V  D     +  + A A   G+ L  +VG K V +  V +
Sbjct: 431 GHDRVRDPNKPVQPRPTGFAVDIDVSPRSLQKKLAEAIEKGYGLIAVVGKKNVENQTVTV 490

Query: 419 KHRLTGIR 426
           +   TG R
Sbjct: 491 Q---TGER 495


>gi|222636488|gb|EEE66620.1| hypothetical protein OsJ_23204 [Oryza sativa Japonica Group]
          Length = 545

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 77/462 (16%), Positives = 157/462 (33%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  F     +    AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 71  RSVDFNAWYTDVIAAAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 120

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 121 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHM 180

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+SYR+LP    Q     R E+R     +R+ EFL ++ ++   T E +     K 
Sbjct: 181 FTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATLEEA----EKE 235

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +  + ++                                    F  +      IP   +
Sbjct: 236 AMQMIDVYT----------------------------------KFAYEQAAIPVIPGRKS 261

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +     N                                 + ++ G     G  +S  
Sbjct: 262 RVETFAGANRTYTIEAM---------------------MGDRKALQAGTSHNLGQNFSRA 300

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
               F   + +  +V   S+ I + R V  +I +  D  G++ P ++AP ++ ++ I K 
Sbjct: 301 FGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPNIAPIQVVIVPIWKK 359

Query: 357 HDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
            D+     +A   +   L + G  V  DD   +  G +F   ++ G P+++ +G + V++
Sbjct: 360 GDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGVPIRLEIGPRDVTN 419

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
             V I  R      G    +S++   ++++   R    +  L
Sbjct: 420 KSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASL 461


>gi|332876867|ref|ZP_08444621.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685150|gb|EGJ57993.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 492

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 155/452 (34%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A +      TG      P       + 
Sbjct: 17  NELVVKADLAESSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHTNAYFPIFIPKSYFE 76

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ +I  PT E ++   +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDPNEKGKLIVDPEAKLEEELIVRPTSESIIWSTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R FL    + +                  
Sbjct: 137 IQSYRDLPILINQWANVVRWE-------MRTRLFLRTAEFLWQ----------------- 172

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                      E      T E  +  S+  M+            
Sbjct: 173 ---------------------------EGHTAHATKEEAIEESERMMNVYAN-------- 197

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               N +       +   ++           E      + ++ G   + G  ++      
Sbjct: 198 -FVENFMAVPVIRGFKTETERFAGADETYCIEAMMQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--- 358
           +   DGK  YV   S+G+ + R++ A+I +  D  G++ P ++AP ++ ++ I       
Sbjct: 257 YATKDGKQEYVWASSWGV-STRLMGALIMTHSDDNGLVLPPNLAPIQVVIVPIYKGAAQL 315

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  R+    +   L K G  V +DD   +  G +F   +L G P+++ VG + + ++  E
Sbjct: 316 ESVRERISPLMEALRKQGISVKFDDRDTQSPGFKFHEYELKGVPVRLAVGQRDLENNTFE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E +S +++I + +      +  L
Sbjct: 376 VARRDTLTKETVSGDDIIAHIAQLLKEIQENL 407


>gi|33146799|dbj|BAC79747.1| putative prolyl-tRNA synthetase [Oryza sativa Japonica Group]
          Length = 545

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/462 (16%), Positives = 157/462 (33%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  F     +    AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 71  RSVDFNAWYTDVIAAAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 120

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 121 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHM 180

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+SYR+LP    Q     R E+R     +R+ EFL ++ ++   T E +     K 
Sbjct: 181 FTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATLEEA----EKE 235

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +  + ++                                    F  +      IP   +
Sbjct: 236 AMQMIDVYT----------------------------------KFAYEQAAIPVIPGRKS 261

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +     N                                 + ++ G     G  +S  
Sbjct: 262 RVETFAGANRTYTIEAM---------------------MGDRKALQAGTSHNLGQNFSRA 300

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
               F   + +  +V   S+ I + R V  +I +  D  G++ P ++AP ++ ++ I K 
Sbjct: 301 FGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPNIAPIQVVIVPIWKK 359

Query: 357 HDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
            D+     +A   +   L + G  V  DD   +  G +F   ++ G P+++ +G + V++
Sbjct: 360 GDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGVPIRLEIGPRDVTN 419

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
             V I  R      G    +S++   ++++   R    +  L
Sbjct: 420 KSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASL 461


>gi|325188965|emb|CCA23493.1| prolyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 620

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 128/237 (54%), Gaps = 2/237 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ ++P L+  P +A + S++L+LR G I +   G ++ LPL  + L  +  II  E  
Sbjct: 18  RSRVWIPTLKAAPIEAAVPSYQLLLRAGFIRKSGHGTFAMLPLATRVLQKLEDIIDTEME 77

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    +  +P + S+DLW  S R+ S   E+    DR +   I  PTHEE MT +   H 
Sbjct: 78  KINGNKCDLPAIVSSDLWKLSDRWRSRTSELFTFRDRRNNEQILAPTHEEPMTALVAQHH 137

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            S        YQI  K+RDE+RPRFG++R+REF+MKD YSFD     +  +Y+ +  SY 
Sbjct: 138 NSTHE-SLRLYQIGKKYRDEVRPRFGLLRAREFIMKDMYSFDTNYSNAVTTYDAVIGSYK 196

Query: 183 RIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           RI  + L L  + ++A++G IGG+ SHEF VLA  GE  +       +      +  
Sbjct: 197 RILQQILRLPVVQVQADTGDIGGNFSHEFHVLASVGEDGILSCSGTPNSTNKECSYA 253



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 19/203 (9%)

Query: 261 DVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATF-KGADGK--DHYVQM 314
           +    +  D  P  K     ++RGIEV H FY G +YS  M+A   + ++G       +M
Sbjct: 418 NYRLAEEEDICPHCKEGLLKASRGIEVAHAFYLGQRYSNSMNALHSRISEGSVVKEPYEM 477

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARL 372
           G +G+G  R++AA++E+SHD  GI WP  +AP+ I ++ I A   D        KI A+L
Sbjct: 478 GCFGLGVSRLLAAIVETSHDKNGIQWPGVIAPYHIIVLAIGATCVDHPLAIGANKIAAQL 537

Query: 373 SKVG----------CDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           S++             V  DD  +   G +   ++L+G+P +V++G ++ +   VE+++R
Sbjct: 538 SQMPFVASSTLSGSVHVILDDRWQTSAGVKLVESELIGYPYRVVIGKQYATARLVEVQNR 597

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
           LT  +  +  EE+  Y   +F+ 
Sbjct: 598 LTMEKTFIKPEELPAYFEDQFAE 620


>gi|166033170|ref|ZP_02235999.1| hypothetical protein DORFOR_02892 [Dorea formicigenerans ATCC
           27755]
 gi|166027527|gb|EDR46284.1| hypothetical protein DORFOR_02892 [Dorea formicigenerans ATCC
           27755]
          Length = 480

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 143/412 (34%), Gaps = 66/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    + + A +      TG   + +P L    L   E+   + +  E+  
Sbjct: 38  KGCLNYLPNGFAIWELIKADLDRRFKETGVENVYLPCLIPEALLEKEADHIEGFAPEVAW 97

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +R  +     PT E +  D++   ++SYR+LP  + Q     R E         
Sbjct: 98  VTHGGMERLQERFCVRPTSETLFCDLWARTVQSYRDLPKVWNQWCSVLRWEKT------- 150

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL         + E      + +  +Y               AE   I         
Sbjct: 151 TRPFLR--------SREFLWQEGHTIHATYEE-------------AEQRTI--------- 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                           M         +   +  +     +      A      E L    
Sbjct: 181 ---------------QMWQIYKDFYKETMAVPFVAGRKAEHEKFAGAQDTYTVEAL---- 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++     +FG+ +       +   D +   V   S+G+ + R + A+I  
Sbjct: 222 ----MHDGKALQSATSHFFGSGFPEAFGIQYIDKDNQLKNVYETSWGL-STRSIGALIMV 276

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  +AP +  +I I  H +   +   ++   L K G  V  DD  +  G +
Sbjct: 277 HGDDDGLVIPPHLAPVECRVIPIAQHKEGVLEKANELLDELKKAGYRVKIDDSEKSPGWK 336

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F+  ++LG P ++ +G K + +++V +  R T  +  +SL+E+         
Sbjct: 337 FSEQEILGIPTRIEIGPKDIENNQVVVVRRDTREKIVVSLDEITTKLREILE 388


>gi|159042526|ref|YP_001541778.1| prolyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|259511577|sp|A8MC04|SYP_CALMQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157921361|gb|ABW02788.1| prolyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 481

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 157/449 (34%), Gaps = 78/449 (17%)

Query: 3   RSKY--FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           RS++  F+    +   DAE+  +             KG Y W P G     NV A+IR  
Sbjct: 10  RSRWVSFIEWFNKVIMDAEVYDY---------RYPVKGAYIWRPYGVAIRRNVEALIRRL 60

Query: 61  QNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDI 117
            + TG  E+  P     + +  ES     +  E+  ++     ++ ++  PT E  M  +
Sbjct: 61  HDETGHQEVLFPVFIPYEFFSKESEHIRGFESEVFWVSKGTGGEERLVLRPTSETAMMPM 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM-KDAYSFDLTPEGSKHSYNK 176
           F+  I+ + +LP   YQI   FR E +    ++R RE  M K+A++     + ++    +
Sbjct: 121 FKLWIRDHTDLPLRVYQIVSVFRAETKMTHPMIRLREISMFKEAHTAHADRDDAERQVKE 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y RI   L +  +       P     +     +A                     +
Sbjct: 181 AVGIYRRIMDELCIPYLI---SRRPDWDKFAGAVYTIA--------------------FD 217

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T   D  ++      +     +          D        ++ GI              
Sbjct: 218 TIMPDGRTMQIGTVHYLGENFSRVFDVKYLGKDGQMHYIHTTSYGI-------------- 263

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-K 355
                                   + R++A++I  + D +G++ P   AP ++ +I I  
Sbjct: 264 ------------------------SERIIASMIAVNGDDRGLLLPPRYAPIQVVVIPIMY 299

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             DQ   +  + +   L   G  V  DD   +  G ++   +L G P+++ VG   V D+
Sbjct: 300 GEDQSVLNYAKGVSGELLNAGVRVHVDDRRDKTPGWKYYHWELKGVPIRLEVGPSDVKDN 359

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V +  R T  +  +    V++       
Sbjct: 360 AVTLTRRDTFEKYAVERSNVVDAVRELMK 388


>gi|294631964|ref|ZP_06710524.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835297|gb|EFF93646.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 470

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 161/453 (35%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ F    QE    AE+A +  +  T +I           P G    + +   +     
Sbjct: 10  RAEDFPRWYQELINKAELADNGPVRGTMVIR----------PYGYGLWERMQQEMDARIK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             GA     P       L  E+   + +  E+  +        ++ ++  PT E ++ + 
Sbjct: 60  DAGAANAYFPLFIPQSYLTREAEHVEGFAPELAVVTHGGGKELEEPIVVRPTSETIVNEY 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++SYR+LP    Q     R E+RPR   +R+ EFL ++ ++   T E +       
Sbjct: 120 FSKWVQSYRDLPLLINQWANVVRWEMRPRV-FLRTTEFLWQEGHTAHATYEDA------- 171

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                             RA +  I  D+ H+F+V        V   K   +    + NT
Sbjct: 172 ------------------RAYAARIHRDVYHDFMVGV-LAIDVVLGRKTVRERFAGAINT 212

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +                                      + +++G     G  ++  
Sbjct: 213 LTLE--------------------------------GMMGDGKALQMGTSHELGQNFAKA 240

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   DG+   V   S+G  + R+V  +I S  D  G+  P  +AP +  ++ +K  
Sbjct: 241 FHTQYLSKDGRQELVWQTSWG-TSTRMVGGLIMSHGDDSGLRVPPRLAPVQAVVLAVKDD 299

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V      +I  RL   G  V  DD  +   G +    +L G P+++ VG + + +   
Sbjct: 300 DAVI-AKVREIGDRLKAAGVRVQVDDRTDVPFGRRAVDWELKGVPVRIEVGPRDLENGTA 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R+ G +  + + E+          ++ +L
Sbjct: 359 MLARRIPGGKAPVRIGEIEALLPKVLEEDQALL 391


>gi|330444263|ref|YP_004377249.1| prolyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807373|gb|AEB41546.1| prolyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 577

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 141/277 (50%), Gaps = 4/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+   +DA + S++L+ + G + +  KGIY++ PL  + +     IIREE
Sbjct: 1   MRTSQLFYRTLKHTKKDA-VLSNELLEKAGYLWRIGKGIYTYTPLLWRVVLKFMEIIREE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+ W+++GR+ ++  E  +  L DR  K     PTHEE+++ + 
Sbjct: 60  LNAIGGQELLLPILHPAEYWLQTGRWHAFVSENLLYHLIDREGKEHCLAPTHEEIVSALL 119

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQ+  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 120 AQWLSGKKQLPLHLYQMAPKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMDEQYQKLR 179

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++Y +IF RLGL    + A+ G IG   S EF VL   GE  + C        I +    
Sbjct: 180 MAYSKIFDRLGLAYAIVNADGGKIGKGKSEEFQVLCSLGEDTI-CVSGDYSANIEAAPVA 238

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                  + ++            +     F S P  K
Sbjct: 239 LPPYKYDDELLPMEEKSTPGVKTIEAVGEFFSQPLQK 275



 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           I + N      I++N   +     YA         L    P+      +GIEV HIF  G
Sbjct: 358 ICANNKKDMHCINVNWGRDLPEPEYADYLLAQEGDLCPVNPDVPYKIFQGIEVAHIFNLG 417

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +Y+    ATF+  +GK+    MG+YGIG  R +AA +E   D +GI+WP+ +APF IS+
Sbjct: 418 IRYTESFQATFQDEEGKERPCWMGTYGIGIGRTLAACVEQLSDSRGIVWPEIIAPFSISI 477

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +     D         +Y  L + GC+   DD  E++G +   +DL+G P ++I+G  + 
Sbjct: 478 L-YNGGDTPSEQVAYSLYQDLQQQGCEPLLDDRDERLGFKLKDSDLIGIPYKLIIGKAYH 536

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +   +EI+ R +G +  +  E  I+++       R +
Sbjct: 537 ASGILEIESR-SGEKFSVPPENFISWSHEHLPRFRRI 572


>gi|319952066|ref|YP_004163333.1| prolyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319420726|gb|ADV47835.1| prolyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 491

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 151/448 (33%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++L+++  +      +G     P G    + + A +      TG      P       L 
Sbjct: 17  NELVVKADLAENSGVRGCMVIKPYGYAIWEKMQAALDAMFKETGHENAYFPLFIPKSYLS 76

Query: 81  VESGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE   +                    + ++ +I  PT E ++ D +R  I
Sbjct: 77  KEASHVEGFAKECAVVTHYRLKMAEDGSGIIVDPDAKLEEELIVRPTSETIIWDTYRRWI 136

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E       MR+R FL    + +                   
Sbjct: 137 QSYRDLPILINQWANVVRWE-------MRTRLFLRTSEFLWQE----------------- 172

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                          A   E +     + M         +   +
Sbjct: 173 ----------------------------GHTAHATEKEAVAEAEQMMNIYAEFAENHMAV 204

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             +  +  +      A      E L            + ++ G   + G  ++      F
Sbjct: 205 PVIKGLKTETERFAGAIETYCIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVKF 256

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK   V   S+G+ + R++ A++ +  D KG++ P  +AP ++ ++ I   D+   
Sbjct: 257 TSKEGKQELVWATSWGV-STRLMGALVMTHSDDKGLVLPPKLAPIQVVIVPIYKGDEQLD 315

Query: 363 DACEKIY---ARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              E+I      L   G  V +D+    + G +FA  +L G P+++ +G + + +   E+
Sbjct: 316 AISERIAPLLKELRAKGVSVKYDNRDTYKPGFKFAEYELKGVPIRLAIGQRDMDNGTFEV 375

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E +  +E++        + +
Sbjct: 376 ARRDTLEKETVQADEIVAKIEFLLEDIQ 403


>gi|126662081|ref|ZP_01733080.1| prolyl-tRNA synthetase [Flavobacteria bacterium BAL38]
 gi|126625460|gb|EAZ96149.1| prolyl-tRNA synthetase [Flavobacteria bacterium BAL38]
          Length = 492

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 154/446 (34%), Gaps = 86/446 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A +      TG      P      ++ 
Sbjct: 17  NELVVKADLAENSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHSNAYFPLFVPKSMFE 76

Query: 82  ----------------ESGRYDSYGKE----MLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                              R  +  ++    M+    + ++ +I  PT E ++   ++  
Sbjct: 77  AEEKNAEGFAKECAIVTHYRLKNDPEKPGKLMVDPNAKLEEELIVRPTSEAIIWSTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R E       MR+R FL    + +                  
Sbjct: 137 VQSYRDLPLLINQWANVVRWE-------MRTRLFLRTAEFLWQE---------------- 173

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                           A     +     + M         +F  
Sbjct: 174 -----------------------------GHTAHATRQEAIEESEKMMNVYADFAQNFMA 204

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I  +  +  +      A      E L            + ++ G   + G  ++      
Sbjct: 205 IPVIKGLKTETERFAGADETYCIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++ A++ +  D KG++ P ++AP ++ ++ I   D+  
Sbjct: 257 FANKEGKQEYVWGTSWGV-STRLMGALVMTHSDDKGLVLPPNLAPIQVVIVPIYKTDEQF 315

Query: 362 RDACEK---IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               E+   + A L K+G  V +D+   ++ G +FA  +L G P+++ +G   + +   E
Sbjct: 316 DAISEQVNALAAELRKLGISVKYDNRDTQKPGFKFAEWELKGVPVRIALGPNDLENGTYE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           I  R    +E +S E V +Y  +   
Sbjct: 376 IARRDNLSKEVVSKEGVASYIQNLLE 401


>gi|303318040|ref|XP_003069022.1| threonyl-tRNA synthetase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108703|gb|EER26877.1| threonyl-tRNA synthetase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320036822|gb|EFW18760.1| threonyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 598

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 143/435 (32%), Gaps = 61/435 (14%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  I      L        S G   + P G    + + + +R +  + G  E+  PT+  
Sbjct: 132 DHRIIGTDQDLFGS--TPFSPGSPYFHPDGAHIFNKLMSFLRAQYKQYGFEEVITPTMYK 189

Query: 77  ADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKS 124
             LW +SG +  Y  +M  +  R             D+     P +      +F S  +S
Sbjct: 190 KSLWEKSGHWHIYKDDMYEVRGRGATGQTVDVEIGEDEQYGLKPMNCPGHCVLFASKTRS 249

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +     R+E+     G+ R R F   D + F   PE  +            
Sbjct: 250 YRSLPVRFAEFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPEQIEREIELTLQFTES 308

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL+   +   + P                E     S    +          D   
Sbjct: 309 VLSTFGLEDYRLVLSTRP----------------EKDYLGSLALWNDAENQLKDALDKSG 352

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y       + ++ DS  +  ++S   +++     FG +Y +P + T  
Sbjct: 353 KPWHINEGDGAFYGPKI---DLQIRDSRGKYHQLSTIQLDMNLPQRFGLEYVVPGTETDV 409

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   V +     G++    A++   ++G    WP  ++P +  ++ +    QV R 
Sbjct: 410 NGPRKATPVLIHRAIFGSLERFFALLAEHYNG---RWPFWLSPRQGIILTVNNDPQVLR- 465

Query: 364 ACEKI------YARLS----------------KVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             + +      Y  L+                +    +  D     +G +   A    + 
Sbjct: 466 TAQTVASGMRGYQSLTFNESEVVATPGLLYPAQATFQIDVDTSSRSLGKKIREAMGRKYK 525

Query: 402 LQVIVGSKFVSDSKV 416
           L  ++G   VS+  V
Sbjct: 526 LVFVIGPSDVSNGSV 540


>gi|225028058|ref|ZP_03717250.1| hypothetical protein EUBHAL_02327 [Eubacterium hallii DSM 3353]
 gi|224954658|gb|EEG35867.1| hypothetical protein EUBHAL_02327 [Eubacterium hallii DSM 3353]
          Length = 536

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 149/449 (33%), Gaps = 77/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K F     +    AE+ S+  +    +I           P G    +N+   +     
Sbjct: 72  MDKDFTQWYTDVVTKAELISYSNVRGCMIIR----------PRGYAIWENIQKQLDARFK 121

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
            TG   + +P L    L   E    + +  E+  +    ++ +       PT E +  D 
Sbjct: 122 ETGVENVYLPMLIPESLLQKEKDHVEGFAPEVAWVTHGGEEKLAERLCVRPTSETLFCDH 181

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  + SYR+LP  + Q     R E +     +RS EFL ++ ++F  T E +K    +M
Sbjct: 182 VKDIVHSYRDLPVVYNQWCSVLRWE-KTTRPFLRSSEFLWQEGHTFHATAEEAKERTEQM 240

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y     +       + A     G     E    A+              + I +   
Sbjct: 241 LNVYADFCEQ-------VLAIPLVKGRKTEKEKFAGAEAT------------YTIEALMH 281

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + S  S         A                                FG +Y+  
Sbjct: 282 DCKALQSGTSHNFGNGFAKA--------------------------------FGIEYT-- 307

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   D K   V   S+G+ + R++ A+I    D  G++ P  +AP +  +I I+  
Sbjct: 308 ------NKDNKLSPVYETSWGM-STRIIGAIIMVHGDDSGLVLPPRIAPVQTMIIPIQQK 360

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I   L      V  DD  +  G +F+  ++ G P ++ +G K +   +  
Sbjct: 361 KDGVLDKAFEIRDTLKS-NFSVKVDDSDKSPGWKFSEQEIQGIPTRIEIGPKDIEKGQAV 419

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           I  R T  +    ++++    +      +
Sbjct: 420 IVRRDTREKIVTPIDKIPETLTEVLETMQ 448


>gi|239612679|gb|EEQ89666.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
 gi|327351753|gb|EGE80610.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 569

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 150/455 (32%), Gaps = 70/455 (15%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L     +P D  +      L T     +S G   +LP G   L+ + + +R +  + G 
Sbjct: 72  YLQTPAVSPADHRVVGTAQELFT--TSPYSPGSPLFLPNGTHILNKLTSFLRAQYIQYGF 129

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
            E+  P++    LW  SG + +Y  +M  +  R              D++    P +   
Sbjct: 130 REVLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGATGEQTAETEIGEDESYGLKPMNCPG 189

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              +F+S   SYR LP  +       R+E+     G+ R R F   D + F   P+    
Sbjct: 190 HCLLFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGS 248

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFP 231
                      + +  G ++  +   + P      S E    A+                
Sbjct: 249 EIESALKFTDTVMNIFGFENYRLVLSTRPEADFIGSLELWESAERQLRNALEKSGRSWEL 308

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
              +   +   I +                       DS  +  ++S   +++     F 
Sbjct: 309 NEGDGAFYGPKIDMQVQ--------------------DSDGKFHQLSTIQLDMNLPQRFE 348

Query: 292 TKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            +Y++         +  G+   V +     G++    A++   ++G    WP  ++P + 
Sbjct: 349 LEYAVAEGEEDYNPETPGRAVPVLIHRAIFGSLERFFALLIEKYNG---RWPFWLSPRQG 405

Query: 350 SLINIKAHDQVCRDACEKIYARLS--------------------------KVGCDVFWDD 383
            ++ +   D+    A E   A++S                          +    +  D 
Sbjct: 406 IILTVSQ-DEKLLRAAEDAAAKMSGYQAHSSSEDANSTTTTGPLKPLSPARTTFSIDLDT 464

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +G +   A  + + L  ++G K ++D  V++
Sbjct: 465 SARPLGKKIREAKEMKYNLIFVLGEKNLADGSVDV 499


>gi|261191482|ref|XP_002622149.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239589915|gb|EEQ72558.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 569

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 150/455 (32%), Gaps = 70/455 (15%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L     +P D  +      L T     +S G   +LP G   L+ + + +R +  + G 
Sbjct: 72  YLQTPAVSPADHRVVGTAQELFT--TSPYSPGSPLFLPNGTHILNKLTSFLRAQYIQYGF 129

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
            E+  P++    LW  SG + +Y  +M  +  R              D++    P +   
Sbjct: 130 REVLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGATGEQTAGTEIGEDESYGLKPMNCPG 189

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              +F+S   SYR LP  +       R+E+     G+ R R F   D + F   P+    
Sbjct: 190 HCLLFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGS 248

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFP 231
                      + +  G ++  +   + P      S E    A+                
Sbjct: 249 EIESALKFTDTVMNIFGFENYRLVLSTRPEADFIGSLELWESAERQLRNALEKSGRSWEL 308

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
              +   +   I +                       DS  +  ++S   +++     F 
Sbjct: 309 NEGDGAFYGPKIDMQVQ--------------------DSDGKFHQLSTIQLDMNLPQRFE 348

Query: 292 TKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            +Y++         +  G+   V +     G++    A++   ++G    WP  ++P + 
Sbjct: 349 LEYAVAEGEEDYNPETPGRAVPVLIHRAIFGSLERFFALLIEKYNG---RWPFWLSPRQG 405

Query: 350 SLINIKAHDQVCRDACEKIYARLS--------------------------KVGCDVFWDD 383
            ++ +   D+    A E   A++S                          +    +  D 
Sbjct: 406 IILTVSQ-DEKLLRAAEDAAAKMSGYQAHSSSEDANSTTTTGPLKPLSPARTTFSIDLDT 464

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +G +   A  + + L  ++G K ++D  V++
Sbjct: 465 SARPLGKKIREAKEMKYNLIFVLGEKNLADGSVDV 499


>gi|42523294|ref|NP_968674.1| hypothetical protein Bd1807 [Bdellovibrio bacteriovorus HD100]
 gi|39575499|emb|CAE79667.1| thrS [Bdellovibrio bacteriovorus HD100]
          Length = 416

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 153/440 (34%), Gaps = 47/440 (10%)

Query: 18  AEIASHKLM-LRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
                H+ +       H       G+  WLP G    D +  + RE +   G   +  P 
Sbjct: 13  HVQKDHRELNQYLSYFHSDESIGAGLPLWLPAGVVIRDELEKLARELEFLAGYQRVVSPH 72

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L   DL+ +SG    Y   M    D  +      P        IF + + SYR LP    
Sbjct: 73  LAKEDLYHQSGHLPYYEDSMYPSMDLENVRYRLRPMCCPHHHKIFSAKLHSYRELPLRLA 132

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +    +R E      G+MR R     DA+ + +     K   +K+   Y + +  LG+  
Sbjct: 133 EYGQVYRYEGSGALSGLMRVRGLCQNDAHLY-VRQNQVKVEIHKVLEMYQKAYRILGISD 191

Query: 193 IPMRAESGPIGGDLSHEFIV--LADTGE---TQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             +R   G    + S +++   L D  E    +V        F  P E   +   I +  
Sbjct: 192 YRLRLSRGVEAEEASQKYVANPLWDWAEGILREVLVESGLPFFEAPGEAAFYGPKIDVQI 251

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +                          K  SA  ++V  I       +     +F   +G
Sbjct: 252 MSV----------------------HGKEESASTVQVDFIS------AERFDLSFINEEG 283

Query: 308 -KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            K+  V +    +G+   + A++   + G   +W   ++P ++ ++ +    Q   +A E
Sbjct: 284 HKERPVILHRAPLGSHERMVALLIELYQGAFPLW---LSPEQVRIVPLADRHQ---EAAE 337

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      V  DD  E +  + A          V++G K +   K  ++ R     
Sbjct: 338 GLRLLLHNSFIRVRVDDRAESLSRKMAECWQEKVHSVVVIGDKELQAGKFSLQRRGASA- 396

Query: 427 EDMSLEEVINYASHRFSNNR 446
           + +S +E+++   +   + +
Sbjct: 397 QSVSAQELLSLLQNEIRDRK 416


>gi|255957075|ref|XP_002569290.1| Pc21g23230 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591001|emb|CAP97220.1| Pc21g23230 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 515

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 145/441 (32%), Gaps = 66/441 (14%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D         L T  +  +S G   +LP G   ++ + + +R +  + G  E+  PT+
Sbjct: 49  PTDHRALGTAQELFTSSV--YSPGSPLFLPNGTHVVNKLISFLRTQYLQYGFREVLTPTI 106

Query: 75  QSADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIK 123
               LW  SG + +Y  +M  +  R            D++    P +      +F+S   
Sbjct: 107 YKKSLWEISGHWQNYKDDMYEVTGRGASGEADGEVGEDESYGLKPMNCPGHCLLFKSQNH 166

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR++P  +       R+E+     G+ R R F   D + F    +  K           
Sbjct: 167 SYRDMPVRYADFSPLHRNEVSGSLTGLTRVRRFHQDDGHIF-CRRQQIKSEIASALGFVD 225

Query: 183 RIFHRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                 GL    +   + P      + E    A+    +   S          +      
Sbjct: 226 MAMKTFGLGPYRLVLSTRPETDYIGTLEMWDNAEMQLREALDSTGREWALNEGDG----- 280

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + +L D   +  ++S   +++     FG +Y +  S  
Sbjct: 281 ---------------AFYGPKIDIQLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAESEP 325

Query: 302 FKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G    V +     G++    A++   H G    WP  ++P +  ++ +   D 
Sbjct: 326 DYNPATPGVATPVMIHRAIFGSLERFLALLIEQHGGH---WPFWLSPRQAIVLTVNQDDA 382

Query: 360 VCRDACEKIYARLSKVGCD----------------------VFWDDMGEQIGSQFAVADL 397
           V R   ++  A+    G                        V  D   + +G +   A  
Sbjct: 383 VVRQ-AQEAAAKF--AGFRALLNDGTAEPPRPLSSVDSTFLVDVDTSAQTLGKKIQRAKQ 439

Query: 398 LGFPLQVIVGSKFVSDSKVEI 418
           + + L  I+GS+ ++D  + +
Sbjct: 440 MKYNLIFILGSRDLADGGITV 460


>gi|311747849|ref|ZP_07721634.1| proline--tRNA ligase [Algoriphagus sp. PR1]
 gi|126575841|gb|EAZ80151.1| proline--tRNA ligase [Algoriphagus sp. PR1]
          Length = 493

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 151/453 (33%), Gaps = 87/453 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++L+ R  +    + +G     P G    + + A +      TG      P       L 
Sbjct: 17  NELVKRADLAENSAVRGCMVIKPYGYSIWEKMQAELDRMFKETGHTNAYFPLFIPKSYLS 76

Query: 81  VESGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE   +                    + ++ +I  PT E V+   +++ I
Sbjct: 77  KEASHVEGFAKECAVVTHYRLKNGENGEGVIVDPDAKLEEELIVRPTSETVIWSTYKNWI 136

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E       MR+R FL    + +                   
Sbjct: 137 QSYRDLPLLVNQWANVVRWE-------MRTRLFLRTAEFLWQ------------------ 171

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                    H     A   E +       M     +   DF  +
Sbjct: 172 -----------------------EGHTAHATAKEAEAETLQ----MMNVYATFAEDFMAL 204

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             +            A   +  E              + ++ G   + G  ++      F
Sbjct: 205 PVVRGRKSANERFAGADDTLCIEA--------MMQDGKALQAGTSHFLGQNFAKAFDVKF 256

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              DGK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++   
Sbjct: 257 AAKDGKLDYVWGTSWGV-STRLMGALIMAHSDDNGLVLPPKLAPIQVVIVPIYRKEEEFD 315

Query: 363 ---DACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   +I A L KVG  V +D+    + G +FA  +L G PL++ +G + + +  +EI
Sbjct: 316 AISEKANEIMAELRKVGISVKYDNRDTHKPGWKFAEYELKGVPLRIAIGPRDLENGTIEI 375

Query: 419 KHRLTGIREDMSLEE--VINYASHRFSNNRPVL 449
             R    +    L    +    S      +  +
Sbjct: 376 ARRDNLTKSQFELSSQPIAEKISGMLEEIQEAI 408


>gi|291518260|emb|CBK73481.1| prolyl-tRNA synthetase, family I [Butyrivibrio fibrisolvens 16/4]
          Length = 479

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 148/424 (34%), Gaps = 68/424 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           +++  +I   S KG     P G    +N+   +      TG   + +P      L   E 
Sbjct: 26  VVKADLIAYSSVKGCMIIKPDGYAIWENIQHELDRRFKETGVQNVYMPMFIPESLLQVEK 85

Query: 84  GRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +         + +   PT E +  D ++  I S+R+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTHGGLNPLQERLCVRPTSETLFCDFYKDIIHSHRDLPKVYNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +RSREFL ++ ++   T E ++    +M   Y             + A  
Sbjct: 146 RWE-KETRPFLRSREFLWQEGHTAHATAEEAEERTVQMLNLYADFCEE-------VLAMP 197

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
              G     E    A+              + I +   D   + S  S            
Sbjct: 198 VVRGQKTDKEKFAGAEAT------------YTIEALMHDGKALQSGTSHNFGQNFSKP-- 243

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                                         FG +Y+          + +  YV   S+G+
Sbjct: 244 ------------------------------FGIQYT--------DKNNQLQYVHQTSWGM 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ A+I    D  G++ P  +AP ++ +I I+   +   +   ++  +L K     
Sbjct: 266 -TTRLIGAIIMVHGDDSGLVLPPRIAPTQVVVIPIQQKKEGVLEKAGEVCEKLGKT-MRA 323

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +F+ A++ G P++V +G K +   K  +  R T  + +  L++V    +
Sbjct: 324 KLDDSDKSPGWKFSEAEMRGIPVRVELGPKDIEAGKCVLVRRDTREKIECPLDQVETKVA 383

Query: 440 HRFS 443
               
Sbjct: 384 ELLE 387


>gi|253568239|ref|ZP_04845650.1| prolyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251842312|gb|EES70392.1| prolyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 497

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 163/449 (36%), Gaps = 85/449 (18%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  Q + +G     P G    + +   + +    TG +    P L        E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + +++ I+S
Sbjct: 82  AEHVEGFAKECAVVTHYRLKNAEDGSGVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q    FR E       MR+R         F  T E                
Sbjct: 142 YRDLPILCNQWANVFRWE-------MRTR--------LFLRTAEFLWQE----------- 175

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                              G  +H     A+  E  +     + +F        +  +  
Sbjct: 176 -------------------GHTAHATRKEAE--EEAIRMLNVYGEFAEK-----YMAVPV 209

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  +         A      E              + ++ G   + G  ++      F  
Sbjct: 210 VKGVKSANERFAGALDTYTIEA--------MMQDGKALQSGTSHFLGQNFAKAFDVQFVN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +  
Sbjct: 262 KENKMEYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQI 320

Query: 365 ---CEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               E I A+L  +G  V +D+   ++ G +FA  +L G P+++++G + + ++ +E+  
Sbjct: 321 DAKVEGIVAKLKALGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R T  +E ++ + +  Y        +  +
Sbjct: 381 RDTLEKETVTCDGIETYVQKLLEEIQANI 409


>gi|15829217|ref|NP_326577.1| threonyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|22654134|sp|Q98PH6|SYT_MYCPU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14090161|emb|CAC13919.1| THREONYL-TRNA SYNTHETASE 1 (THREONINE--TRNA LIGASE) (THRRS)
           [Mycoplasma pulmonis]
          Length = 589

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 147/438 (33%), Gaps = 36/438 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L ++++   RD       L + T        G   WL  G      +   I     + G
Sbjct: 180 YLKVIEDRKERDHRKIGKNLGIFT-FSSLSGLGFPIWLKKGMLIKRAIEKEILYLDRKYG 238

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+++SG    Y + M +  +  ++ +I  P        I+ +  +SY
Sbjct: 239 FEEVLSPHFGEESLYIKSGHLAHYQETMFKSLEVENEKLIPRPMTCPHHIIIYDAFPRSY 298

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +    +R E      G+ R R   + + + F +  +  K     M       
Sbjct: 299 RELPLRLSEQSRLYRYEKSGALTGLERVRTMDLTEGHIF-IRQDQIKDEVLNMINLIQET 357

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                +K   +                      + + F   D M     S   +  D   
Sbjct: 358 LKIFKIKIDHVALSLRD---------------NDKEKFFDDDQMWDQAESALKEILDQNK 402

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           ++ I        A      + ++   L     +S   ++    F    K+    + ++  
Sbjct: 403 IDYI--VEKGEAAFYGPKIDFQVKTVLNNIITMSTIQLD----FLLPRKF----NISYIA 452

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG K   + +    IG      +++     G    W   ++P ++ ++ I       ++
Sbjct: 453 PDGSKQTPLMIHRGLIGTYERFVSILLEQTKGNFPFW---LSPSQVIVLPIAK---EFKE 506

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +IY+++ K   +V  D+  E I  +   A +  +  Q+I+G + + +  + I+    
Sbjct: 507 YAFEIYSKIFKQNFNVEIDNRDETINKKIREAQINKYKYQIIIGKQEMENKTIAIREYGK 566

Query: 424 GIREDMSLEEVINYASHR 441
                M LE  I     +
Sbjct: 567 VQTITMDLESFIEKIKSQ 584


>gi|167520264|ref|XP_001744471.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776802|gb|EDQ90420.1| predicted protein [Monosiga brevicollis MX1]
          Length = 473

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 147/429 (34%), Gaps = 72/429 (16%)

Query: 8   LPILQENPR-DAEI-----ASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            P  +E  + +A +      +H+ +    +   +   S G   WLP G +    + A++R
Sbjct: 52  FPTQKEMKQYEARLEMAKQRTHQHIGQEQKLFFLDARSPGAPFWLPHGLRIFKRLEALVR 111

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI--YGPTHEEVMTD 116
              +  G  E+  P +    LW  SG ++ Y ++M  L  + D+ +     P +      
Sbjct: 112 GVHSNYGFEEVKSPLVYKQHLWNTSGHWEHYSEDMTVLQHKEDEEVCQALKPMNCPAHCI 171

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F     SYR LP  F +     R+E      G+ R R+F   D + F   P+       
Sbjct: 172 MFSHEPHSYRELPLRFAEHSALHRNEASGALSGLTRVRQFHQDDGHIF-CRPDQVSSEVA 230

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +   +   ++ RLGL    +   + P  G                               
Sbjct: 231 RCLEAIGVVYARLGLTPTAV-LSTRPETG------------------------------- 258

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                       +          +S + + ++ D++    + +   ++            
Sbjct: 259 -----------YVGSLEIWCALRSSFIIDIRVRDAMGRTHQTATIQLDFNMPMR------ 301

Query: 296 LPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                ++K  DG       +    +G+   + A++   + G    WP  ++P ++ ++ +
Sbjct: 302 --FELSYKDEDGAPQTPVLIHRAVLGSFERMMALLTEQYWG---RWPLHLSPRQLLILPV 356

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +        +Y  L   G  V  DD    +  + A   +L      +VG + V++ 
Sbjct: 357 ---SEKHASYAWDVYHELQPFG-HVDVDDSPVSLSKRIAQQRVLRHNYVAVVGDEEVAND 412

Query: 415 KVEIKHRLT 423
            + I+HR  
Sbjct: 413 TLSIRHRDG 421


>gi|291460611|ref|ZP_06600001.1| proline--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416802|gb|EFE90521.1| proline--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 478

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 135/447 (30%), Gaps = 78/447 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F     +  + AE+A +             KG     P G    + +   +     
Sbjct: 13  MSEDFAQWYTDIVKKAELADYS----------SVKGFMVIRPAGYAIWEMLMQALDSRFK 62

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            +G    ++P L    L   ES   + +  E+  +      R ++ +   PT E +  D 
Sbjct: 63  ASGVQNCAMPMLIPESLLSRESEHVEGFAPEVAWVTMGGKKRLEEKLCVRPTSEVLFCDY 122

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   +KSYR+LP    Q     R E         +R FL    + +              
Sbjct: 123 YSKIVKSYRDLPQLLNQWVSVIRWEKT-------TRPFLRTREFLWQ------------- 162

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSEN 236
                                         H     A+  E   +     + D       
Sbjct: 163 ----------------------------EGHTVHATAEEAEERTILMLNIYKDVAENEMA 194

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                    +               +                 + ++ G    FG  ++ 
Sbjct: 195 IPVVSGRKTDKEKFAGAIATYTIEGL-------------MHDGQALQCGTSHNFGDGFAK 241

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                F   D +   V   S+G    R++ A+I    D  G+  P  +AP +I ++ ++ 
Sbjct: 242 AFGVQFLDKDNQRKTVHQTSWGFT-TRMIGALIMVHGDDSGLKIPPRIAPTQIMIVPVQQ 300

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D    +  RL K G  V  DD     G +FA  ++ G PL++ +G + +   + 
Sbjct: 301 QKEGVLDKAFSLRERLIKAGFRVKVDDSDRSPGYKFADCEMRGIPLRLEIGPRDIEAGQA 360

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            +  R TG +    L+ +         
Sbjct: 361 VLVRRDTGEKLTAPLDGLEKECGELLE 387


>gi|163840211|ref|YP_001624616.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162953687|gb|ABY23202.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 453

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 148/438 (33%), Gaps = 45/438 (10%)

Query: 16  RDAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
            D      +L L     +I     G+  WLP G      +  +  EE  R+G   +  P 
Sbjct: 51  ADHRQLGRELDLFASNPLI---GPGLPLWLPDGAVIRTELEKLAVEESLRSGYQRVYSPV 107

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L   +L+  SGR+  + ++M       ++ ++  P +      +F +   S+R LP  + 
Sbjct: 108 LAKRELYERSGRWAKFSEDMFPPLRIGNEELVLRPANCPHHAMLFAARPHSWRELPIRYA 167

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++   FR EL     G+ R R+  + D + F  TPE ++    +   +    +  LGL+ 
Sbjct: 168 ELGSMFRSELSGVLSGLSRVRQINLDDCHVF-CTPEQAQSEVVRGIQAISAGYSILGLEP 226

Query: 193 IPMRAESGPIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              R  +   G     S      A++               +                  
Sbjct: 227 DYFRLSARDSGTSFAGSASDWAAAESVLKAALDELGLPYRRVAG---------------- 270

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                 A      + + FD+  + + +S   ++                  + G DG  H
Sbjct: 271 ----EAAFYGPKIDVQFFDAAGKEETLSTVQLDFVQPER--------FDLAYIGDDGAAH 318

Query: 311 YVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              M   G  GAM    A++   H GK    P  +AP +++++ +          C +I 
Sbjct: 319 RPMMVHRGLFGAMERTVALLIEKHQGKM---PPWLAPVQLAVLPV---SDTQAARCAEIS 372

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A+    G  V  D     +GS+             +VGS+     K+ +        + +
Sbjct: 373 AQALAAGIRVIVDH-DGSVGSRVRKTSQRRVSWLAVVGSQESESGKLSLSIPGARPAQLL 431

Query: 430 SLEEVINYASHRFSNNRP 447
            + E I     +     P
Sbjct: 432 PVTEAIELMRQKIQRREP 449


>gi|225175968|ref|ZP_03729960.1| prolyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225168556|gb|EEG77358.1| prolyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 483

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 144/418 (34%), Gaps = 70/418 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           +L+  M+     KG     P G    +N+ A + E    TG      P      L   E+
Sbjct: 27  ILKAQMMDYSPVKGCMVIRPYGFTLWENMQAGLDERIKATGHRNAYFPLFIPESLLQKEA 86

Query: 84  GRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    ++ +    +  PT E ++ ++F   I+SYR+LP    Q     
Sbjct: 87  DHVEGFAPEVAWVTHGGNEKLSERLLVRPTSETIICEMFSRWIQSYRDLPVLMNQWCNVV 146

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E         +R FL                                  + +     +
Sbjct: 147 RWEK-------VTRPFLRTS-------------------------------EFLWQEGHT 168

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  S E          +V+      D  +P       +        E ++      
Sbjct: 169 ----AHRSEEEAEEHTLRMLEVYRDFVENDLAVPVVKGQKTENEKFAGARETYSIEAL-- 222

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G     GT ++     T+  +DG+  +V   S+G+
Sbjct: 223 ----------------MSDGKALQAGTSHNLGTHFAKVFDITYLDSDGELKHVWQTSWGV 266

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGC 377
            + R+V A+I    D +G++ P  VAP ++ L+ I      +        IY  + + G 
Sbjct: 267 -STRLVGAIIMVHGDDRGLVLPPKVAPTQVILVPIAPKKVREEVLPKAAAIYEEIKEAGI 325

Query: 378 DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +  DD  E   G +F   ++ G PL++ VG + +   +  +  R  G +E +++ ++
Sbjct: 326 RIEMDDREEYSPGWKFNEWEMKGVPLRIEVGPRDLEAGQAVLARRDNGEKETVAIGDL 383


>gi|153854756|ref|ZP_01995990.1| hypothetical protein DORLON_01988 [Dorea longicatena DSM 13814]
 gi|149752663|gb|EDM62594.1| hypothetical protein DORLON_01988 [Dorea longicatena DSM 13814]
          Length = 479

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 137/415 (33%), Gaps = 66/415 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    + + A +      TG   + +P L    L   E+   + +  E+  
Sbjct: 37  KGCMNYLPNGYAIWELIQADLDRRFKETGVENVYLPVLIPESLLEKEADHVEGFAPEVAW 96

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +R  + +   PT E +  D++   +KSYR+LP  + Q     R E         
Sbjct: 97  VTHGGMERLQERLCVRPTSETLFCDLWAKTVKSYRDLPKVWNQWNSVLRWEKT------- 149

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL    + +                                            H   
Sbjct: 150 TRPFLRSREFLWQ-----------------------------------------EGHTLH 168

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  E +       M         +   I  +     +      A      E L    
Sbjct: 169 ATYEEAEERTIQ----MWEVYKDCYKETMAIPFVAGRKAEHEKFAGAEDTYTIEAL---- 220

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++     +FG  +       +   + + H     S+G  + R + A+I  
Sbjct: 221 ----MHDGKALQSATSHFFGNGFPDAFGIKYVDKNNELHSAYETSWG-WSTRSIGALIMV 275

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  VAP +  +I I  H +   D    +   L K G  V  DD  +  G +
Sbjct: 276 HGDDDGLVLPPHVAPVECRIIPIAQHKEGVLDRSYALLDELKKAGYRVKIDDSDKSTGWK 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F+  ++LG P ++ +G K +  ++V +  R    +  +SL+E+           +
Sbjct: 336 FSEQEILGIPTRIEIGPKDIEKNQVVVVRRDNREKIVVSLDEIAVKLREILEQEQ 390


>gi|167957086|ref|ZP_02544160.1| threonyl-tRNA synthetase [candidate division TM7 single-cell
           isolate TM7c]
          Length = 603

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 161/455 (35%), Gaps = 52/455 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIR 58
            ++  L    EN   A+   H+ + R   ++  S     G+  + P G    + ++    
Sbjct: 185 ATQEELDEYLENIEIAKQRDHRKLGRDLDLYTTSPLVGVGLPLFTPRGTILREVMSQYSN 244

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDI 117
           + + + G  ++  P +   DL+ +SG +  +G+E+  +  +     M   P +    T I
Sbjct: 245 QLRQKFGFEKVWTPHITKKDLYEKSGHWAKFGEELFLVKSQETSDEMALKPMNCPHHTQI 304

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F S  +SYR++P  + +    +RDE      G+ R R     D++ F   P+  +   N 
Sbjct: 305 FASRPRSYRDMPVRYLETTTDYRDEKTGELGGLSRVRSLTQDDSHVF-CRPDQIEEEINN 363

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +   ++  + +K + +R                     ++  +     +      + 
Sbjct: 364 LLSAARELYESIDMK-LRVRLSYRD----------------DSDSYLGDIDLWDSAQGQL 406

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               + + L+    +     A      +    D++    +V+   ++      FG +Y  
Sbjct: 407 KSAVERVGLD--YFEQEGEAAFYGPKIDFMATDAIGREHQVATVQLDFVQPQRFGLEY-- 462

Query: 297 PMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                    +G      M     +G++    +V      G    W    AP ++ ++ I 
Sbjct: 463 ------VDINGNSTTPVMVHCALLGSIERFLSVFIEHTGGWFPFW---AAPEQVRILTIN 513

Query: 356 AHDQVCRDACEKIYARLSK---------VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
                     +KI   LS+                D   E +G +   A  +  P+Q+IV
Sbjct: 514 ---DSVLGYVDKITTILSETTLTKPVKYNDVRFTSDIRNESLGKKIREATSMKIPVQLIV 570

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G K +   +V I+ +    +  + LE +  Y    
Sbjct: 571 GPKDMEAGEVSIRTQAGEEK--IPLENLSGYLKSL 603


>gi|297527274|ref|YP_003669298.1| prolyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256190|gb|ADI32399.1| prolyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 483

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 156/429 (36%), Gaps = 70/429 (16%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            EI  H  ++ T       KG+  W+P G KAL  +  I+      TG  E   PT+   
Sbjct: 23  HEILKHAKIVDT---RYPVKGMNVWMPYGLKALRMIQKIMINLLEETGHEEAYFPTMIPE 79

Query: 78  DLW-VESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            ++  E      +G E       +  + ++ +   PT E VM  ++   IK  ++LP   
Sbjct: 80  SVFSKEKDFLQGFGGETFVVEGTMTKKFNEKLFVRPTSETVMYYMWNIWIKGRKDLPLKM 139

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           YQI   FR E +    ++R RE                                      
Sbjct: 140 YQIVNVFRYETKMTHPILRVREI------------------------------------- 162

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                    +    +H     ++  E Q+                 +        +    
Sbjct: 163 ---------MSFIEAHTAHATSEEAEKQI-----------NEALNIYKKFFDSLLLPYFI 202

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                  +    E  +D +        +G+E+G +   G K++      F  +DGK  YV
Sbjct: 203 VKTPPWDTFAGAEYNYDFI--TAMPDGKGLELGSVINLGQKFARAFDIKFMDSDGKTKYV 260

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
               YG+ + R + AVI    D KG+  P  +AP ++ ++ I   D+    +    I  +
Sbjct: 261 YQTCYGV-SERTLGAVIAIHGDKKGLFLPPIIAPIQVVIVPIARRDEQDIIEYARGISEK 319

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           LS+ G   + DD  E   G ++   ++ G P ++ +G + ++++ V I  R    +  ++
Sbjct: 320 LSEAGIRTYLDDDPEHTPGWKYYFWEMKGVPTRIEIGRRELNNNTVTIARRDGAKKITVN 379

Query: 431 LEEVINYAS 439
           + E+I+   
Sbjct: 380 INELIDKLR 388


>gi|295135607|ref|YP_003586283.1| prolyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294983622|gb|ADF54087.1| prolyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 492

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/452 (15%), Positives = 148/452 (32%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A +      TG      P      L+ 
Sbjct: 17  NELVVKADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFE 76

Query: 82  -ESGRYDSYGKEMLRLA------DRN-------------DKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +       D               ++ ++  PT E V+ + +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDEENKGKLIVDPAAKLEEELVVRPTSEAVIWNTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R FL    + +                  
Sbjct: 137 IQSYRDLPILINQWANVVRWE-------MRTRLFLRTSEFLWQ----------------- 172

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                               E     +          +  D   
Sbjct: 173 ------------------------------------EGHTAHATRQEALAETMQMNDIYA 196

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               N +           ++           E      + ++ G   + G  ++      
Sbjct: 197 EFVENFMATPVIKGAKTENERFAGAEETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV- 360
           F   +G   +V   S+G+ + R++ A++ +  D KG++ P  +AP ++ ++ I   ++  
Sbjct: 257 FATKEGGLEHVWATSWGV-STRLMGALVMTHSDDKGLVLPPKLAPIQVVIVPIYKSEEQL 315

Query: 361 --CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               D    +   L   G  V +D+    + G +FA  +L G P+++ +G K +    VE
Sbjct: 316 DQISDVANGLVKDLRAKGISVKFDNRDTHKPGWKFAQYELQGVPVRLAIGPKDIEKGTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E + ++ V+          +  L
Sbjct: 376 LARRDTLTKEFVEMDGVVEKVVALMEEIQETL 407


>gi|330791908|ref|XP_003284033.1| hypothetical protein DICPUDRAFT_74994 [Dictyostelium purpureum]
 gi|325086079|gb|EGC39475.1| hypothetical protein DICPUDRAFT_74994 [Dictyostelium purpureum]
          Length = 606

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/229 (40%), Positives = 140/229 (61%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RSK F+P   +      I S  LM + G+I + + G YS LP  QKAL+N+  +I EE  
Sbjct: 45  RSKMFIPFQDQKMETDLIESQLLMQKGGLIRKLAVGSYSTLPFAQKALENLIKVIDEEME 104

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  +M++P +   +LW ++GR+D++GK++++L DR +     GPTHEEV+T I  +  
Sbjct: 105 QVGGQKMTMPKMIPKELWDKTGRWDAFGKDLIKLKDRRENEYCMGPTHEEVVTSIVGNEK 164

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
             + N P   YQI  KFRDE+RPRFG++R +EFLMKD YSFD+T E ++ +Y ++  +Y 
Sbjct: 165 LPFNNFPIKLYQIGEKFRDEIRPRFGLLRGKEFLMKDMYSFDVTKEDAEKTYYQVKQAYH 224

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            I  RL L    + A+SG IGG++SHEF V+   GE ++    +     
Sbjct: 225 NILDRLELPYACVEADSGNIGGNMSHEFQVVTKAGEDKLIHCSNCGYHA 273



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
               +K    +GIEVGHIFY G KYS   +AT    +     ++MG +GIG  R++AA +
Sbjct: 419 CNGSSKLGIKKGIEVGHIFYLGNKYSSSFNATSC-KNNIVKDLEMGCFGIGVSRLLAASV 477

Query: 330 ESSH----------DGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCD 378
           E+                I +P  + P+ I ++  K   Q    +  +++  ++ ++   
Sbjct: 478 EALSKSGKEIDGTVTKDKITFPKEITPYHIIIVPKKESLQKDAEEISQQLQQQIPELKGR 537

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVG-SKFVSDS-KVEIKHRLTGIRED----MSL 431
           +  DD     +G +   +  LG P  +++   K    + KVE      G  ++    ++ 
Sbjct: 538 IIIDDRHDANVGHKIFESKFLGIPYLLVLNIDKSKQTNYKVEY---DYGQIKEENNYLNQ 594

Query: 432 EEVINYASHRF 442
            + ++Y  ++F
Sbjct: 595 PDTLDYFKNKF 605


>gi|150025459|ref|YP_001296285.1| prolyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|166980123|sp|A6GZF3|SYP_FLAPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149772000|emb|CAL43476.1| Proline--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 492

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 156/452 (34%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L++R  +      +G     P G    + + A +      TG      P      ++ 
Sbjct: 17  NELVVRADLAENSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHSNAYFPLFVPKSMFE 76

Query: 82  ESG--------------RY------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                             Y      D  GK M+    + ++ +I  PT E ++   ++  
Sbjct: 77  AEEKNAEGFAKECAIVTHYRLKNDPDKPGKLMVDPNAKLEEELIVRPTSEAIIWSTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL                         
Sbjct: 137 IQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFL------------------------- 170

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                      +    A     +     + M         +F  
Sbjct: 171 --------------------------WQEGHTAHATRKEAIEESEKMMNVYADFAQNFMA 204

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I  +  +  +      A      E L            + ++ G   + G  ++      
Sbjct: 205 IPVIKGLKTETERFAGAEETYCIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F  A+GK  +V   S+G+ + R++ A++ +  D  G++ P ++AP ++ ++ I   D+  
Sbjct: 257 FANAEGKQEHVWGTSWGV-STRLMGALVMTHSDDNGLVLPPNLAPIQVVIVPIFKTDEEF 315

Query: 362 R---DACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    + ++  K+   V +D+   ++ G +FA  +L G P+++ +G K + +   E
Sbjct: 316 EKISALANDLISQFKKLNISVKFDNRTTQKPGFKFAEWELKGVPVRIAIGPKDLENETFE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           I  R T  +E    E ++ Y S   +  +  L
Sbjct: 376 IARRDTLTKEVKPKEGIVKYISDLLAQIQSDL 407


>gi|296241821|ref|YP_003649308.1| prolyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
 gi|296094405|gb|ADG90356.1| prolyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
          Length = 483

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 162/442 (36%), Gaps = 80/442 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +++  +L+E    A+I           I    KG+  W+P G KAL     I+ +    T
Sbjct: 20  EWYHKVLKE----AKIVD---------IRYPVKGMNVWMPYGLKALRLTQRILIQLLEET 66

Query: 65  GAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFR 119
           G  E   PT+    ++  E      +G E   +      R D+ +   PT E VM  ++ 
Sbjct: 67  GHEEAYFPTMIPESVFSKEKDFLQGFGGETFVVEGTATKRFDERLFVRPTSETVMYYMWN 126

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             IK  ++LP   YQI   FR E +    ++R RE                         
Sbjct: 127 MWIKGRKDLPVKMYQIVNVFRYETKMTHPILRVREI------------------------ 162

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                 +G   +H      +  E Q+  +              F
Sbjct: 163 ----------------------MGFIEAHTAHASMEEAEAQIREAL--------GIYKKF 192

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D + L   + +           +N      +P+ K     G+E+G +   G ++S    
Sbjct: 193 FDTLQLPYFIVKTPPWDTFAGAEYNYDFITVMPDGK-----GLELGSVINLGQRFSRAFD 247

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHD 358
             F   DG + YV    YG+ + R + AVI    D KG+ +P  +AP ++ ++ I K  +
Sbjct: 248 IKFMDTDGVEKYVYQTCYGV-SERTLGAVIGIHGDDKGLFFPPEIAPIQVVVVPIMKGVE 306

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           Q   D    +   L  +G  V  D D+    G ++   ++LG P ++ +G +  S + V 
Sbjct: 307 QDVLDYSRNVEKHLKNLGVRVTVDMDLEHTPGWKYYYWEMLGVPTRIEIGKREASTNTVT 366

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           I  R    +  + + E+ +   
Sbjct: 367 IARRDGKPKVQVKISEIYDALK 388


>gi|116180492|ref|XP_001220095.1| hypothetical protein CHGG_00874 [Chaetomium globosum CBS 148.51]
 gi|88185171|gb|EAQ92639.1| hypothetical protein CHGG_00874 [Chaetomium globosum CBS 148.51]
          Length = 758

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 137/420 (32%), Gaps = 65/420 (15%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G    LP G +  + +   +R++  R G  E+  PT+    LW +SG  ++Y  +M 
Sbjct: 5   YSPGSPILLPNGARIFNRLIDFLRQQYVRYGFQEVITPTIYKKALWAKSGHLENYSDDMY 64

Query: 95  R----------LADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                      + DR ++      P +      IF S  +SYR+LP  +       R+E+
Sbjct: 65  TVTSTSPSRAEVTDRGEEAEYGLKPMNCPGHCLIFASQTRSYRDLPIRYADFSPLHRNEI 124

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R F   D + F   P   +    K        +  LGL    +   + P 
Sbjct: 125 SGALSGLTRVRRFHQDDGHIF-CRPSQIRDEIAKTLDFVRLTYGVLGLGPYRLVLSTRPE 183

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               S E    A++   +            P +                     A     
Sbjct: 184 QYIGSEEDWTQAESALREALVGSRLQYTINPGDG--------------------AFYGPK 223

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM-----------SATFKGADGKDHY 311
            +  L DS  +  + +   ++      F  +Y+ P             A      G    
Sbjct: 224 IDIILKDSDGKEHQTATIQLDFQLPKRFNLEYTAPAPEFEKRGAITTDAELLAEYGPVQP 283

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+   + A++   + GK   WP  + P +  +I +  + +   +   +    
Sbjct: 284 VLIHRAVLGSAERLMALLIEHYKGK---WPFWLNPRQAIVITVN-NSEPVANWARQTRDI 339

Query: 372 LSKV-------------GCDVFWDDMGEQIGS--QFAVADLLGFPLQVIVGSKFVSDSKV 416
           L  V             G  +  DD     G   +   A   G+ L + VG + V    V
Sbjct: 340 LLGVSASTSTIEAASPTGLAIDIDDSNR--GVELKVREAKTKGYGLIIGVGPRDVETKTV 397


>gi|289450634|ref|YP_003474779.1| proline--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185181|gb|ADC91606.1| proline--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 483

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 137/414 (33%), Gaps = 68/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   +++P      L   E      +  E+  +
Sbjct: 39  GCMVIRPYGYAIWENMKQDLDRRFKATGHENVAMPMFIPESLLQKEKDHVQGFAPEVAWV 98

Query: 97  ADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D    + +   PT E +  D +   I+SYR+LP  + Q     R E +     +R+
Sbjct: 99  THGGDALLPERLCVRPTSETLFCDHYARIIQSYRDLPKLYNQWCSVVRWE-KTTRPFLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF  ++ ++          +  +      R+ +        + A+              
Sbjct: 158 MEFFWQEGHTVH-------ETAEEAIAETERMLN--------VYAD-------------- 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    F  +      I    TD +                                
Sbjct: 189 ---------FLREVLAIPVIKGRKTDKEKFAGAEMTYTVEAL------------------ 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++      F   + K  Y    S+G+ + RV+ A+I   
Sbjct: 222 ---MHDGKALQSGTSHYFGDGFARAFGIQFSDRENKLQYCHETSWGM-STRVIGAMIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
            D  G++ P  VAP +I LI I  H      A   +  RL K   G  V  D   +  G 
Sbjct: 278 SDDSGLVLPPRVAPVQIMLIPIAMHKDGVLPAVFALRDRLQKASYGFRVKVDASDKMPGW 337

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F+  ++ G PL++ +G + +    V    R TG +  + LE + +  +     
Sbjct: 338 KFSEQEMRGIPLRLEMGPRDIEQGSVVAVRRDTGAKTILPLEGIEDALAKLLDE 391


>gi|307595133|ref|YP_003901450.1| prolyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307550334|gb|ADN50399.1| prolyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 489

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 147/418 (35%), Gaps = 66/418 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
                KG Y W P G +    V + +R   + TG  E+  P     + +  ES     + 
Sbjct: 37  FRYPVKGAYVWRPYGMRIRRLVESYVRLVHDETGHQEVLFPVFIPYEFFSKESEHIRGFE 96

Query: 91  KEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            E+  ++     ++ ++  PT E  M  +F+  IK + +LPF  YQ              
Sbjct: 97  NEVFWVSKGGTGEERLVLRPTSETAMMPMFKLWIKDHTDLPFKVYQ-------------- 142

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
                                            + +F      + PM           +H
Sbjct: 143 --------------------------------IVSVFRAETKATRPMIRLREISMFKEAH 170

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 +  E Q+  + +                   + +   +        D     ++
Sbjct: 171 TAHANREDAERQIKEAMEIY-------------KKIFDYLSIPYLISQRPEWDKFAGAVY 217

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +      + +++G + Y GT +S      +    G   YV   SYGI + RV+AA+
Sbjct: 218 TIAFDTVMPDGKTMQIGTVHYLGTNFSRVFDVRYLTPSGDWEYVHTTSYGI-SERVIAAM 276

Query: 329 IESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           I    D KG+  P +VAP ++ ++ I  K  ++      + I   L+  G  V  DD   
Sbjct: 277 IAVHGDDKGLALPPNVAPIQVVIVPIMYKGTEEAIMREVKSITEELTNAGIRVKVDDRTD 336

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  G ++   +++G PL++ +G K V + +V +  R T  +     E +++      +
Sbjct: 337 KTPGWKYNYWEMMGVPLRIEIGPKDVENRQVVLARRDTMEKFVAPREGIVDTVKELLN 394


>gi|50552312|ref|XP_503566.1| YALI0E05027p [Yarrowia lipolytica]
 gi|49649435|emb|CAG79147.1| YALI0E05027p [Yarrowia lipolytica]
          Length = 517

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 145/443 (32%), Gaps = 75/443 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      + +      +  + G      P  + S  L 
Sbjct: 30  QQIVTKGEMLDYYDVSGCYIMRPPSYFVWEQIQEWFNIKIKKLGVKNAYFPMFVSSRVLE 89

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   ++S+R+LP    Q  
Sbjct: 90  KEKDHVEGFAPEVAWVTKAGSSDLEEPVAIRPTSETVMYPYYAKWVRSHRDLPLKLNQWN 149

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT + +                          
Sbjct: 150 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTAKEA-------------------------- 183

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                       E  V+A     +   S+      I  + ++                 +
Sbjct: 184 ------------EDEVMAILDNYEKIYSELLAVPVIKGKKSE--------------KEKF 217

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQM 314
           A        + F         + RGI+       G  +S     + +  +G     +   
Sbjct: 218 AGALFTTTVEGFIPS------TGRGIQGATSHCLGQNFSKMFDISVEDPNGGADKLFAWQ 271

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEK 367
            S+G+ + RV+  +  +  D KG++ P  VA  +  +I                 DA   
Sbjct: 272 NSWGL-STRVIGVMTMTHSDNKGLVLPPRVAHTQAIIIPCGLTAKLAAEKRAAVMDASAA 330

Query: 368 IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           I   LS+    V  D       G +F+ A+L G PL++ VG + V   K+    R  G +
Sbjct: 331 IEKALSEADVRVASDTRDTYSPGWKFSDAELRGIPLRIEVGPRDVEQGKIVAVRRDNGEK 390

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             M + ++           +  L
Sbjct: 391 IVMDIADLATSVPELLETIQKDL 413


>gi|326335459|ref|ZP_08201646.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692225|gb|EGD34177.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 492

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 159/449 (35%), Gaps = 86/449 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++ G+      +G     P G    + +  I+ +    TG      P       + 
Sbjct: 17  NELVVKAGLAENSGVRGCMVIKPYGYAIWERMKDILDKMFKETGHQNAYFPIFIPKSYFE 76

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ +I  PT E ++ + +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDPSQKGKLIVDPEAKLEEELIVRPTSEAIIWNTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T    +    +     
Sbjct: 137 IQSYRDLPILINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHAT----REEAIEEAQKM 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++                                    F  +      I    T+ + 
Sbjct: 192 NEVYAT----------------------------------FVEQYMGVPVIRGRKTEAER 217

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +                                 + ++ G   + G  ++      
Sbjct: 218 FAGADDTYCIEAL---------------------MQDGKALQAGTSHFLGQNFAKAFEVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   +G   YV   S+G  + R++ A+I S  D  G++ P  +AP ++ ++ I   ++  
Sbjct: 257 YANKEGVLDYVWASSWG-SSTRLMGALIMSHSDDNGLVLPPLLAPIQVVIVPIYKGEEQL 315

Query: 362 RDACEK---IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   ++   +   L K    V +DD   ++ G +F   +L G P+++ VG + + ++  E
Sbjct: 316 QSIRQRITPLMQALKKHEITVKFDDDDTQKPGFKFHEYELKGVPIRLAVGQRDLENNTYE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +  R T  +E +S E ++ +     ++ +
Sbjct: 376 VARRDTLTKESISGERIVEHIESLLTDIQ 404


>gi|294155633|ref|YP_003560017.1| threonine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600202|gb|ADE19698.1| threonine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 580

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 158/443 (35%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL++   RD      ++ L T       +G   WL  G    + V  +I +   + G
Sbjct: 169 YLAILEDRKERDHRKIGKEMKLFT-FSKLAGQGFPIWLEDGMAIHNEVKKLILKMDRKYG 227

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG    Y  +M +  +   + +   P         +++  +SY
Sbjct: 228 FREVLTPHFGEETLYKISGHLAHYKDDMFKPLEVEGEKLYPRPMTCPHHIICYKTEKRSY 287

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +    +R E      G+ R R  L+ + + F L P+  ++ +  M+      
Sbjct: 288 RDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHIF-LRPDQIENEFKTMYSLIKET 346

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              L +K   +                   D  + + +   D M      +      +  
Sbjct: 347 LDLLKIKINYISLSLR--------------DKNDKEKYFDDDKMWNNSEEQLRKV--LND 390

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           LN   E+     A      + ++F SL     +S   ++    F   T++       +  
Sbjct: 391 LNVQYEEKVGEAAFYGPKIDIQIFTSLGHEITISTLQLD----FLLPTRF----EMKYTD 442

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG +    +   G IG      A +     G   + P  +AP ++++I +  H+     
Sbjct: 443 KDGNEKTPVLLHRGLIGTYERFVATLLEQTKG---VLPFWLAPKQVTIIPV--HEINNLT 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++IY  L      V  DD  E++  +   A +     Q+I+G +  ++  +  +    
Sbjct: 498 YSKEIYNTLFDHDFRVSLDDREERLSKKMREAQISKSKYQLILGDEEQNNKTISYRKYGE 557

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                 +++E I   +    N R
Sbjct: 558 NSTTTTTIDEFIKMINEDRMNYR 580


>gi|119494491|ref|XP_001264141.1| threonyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119412303|gb|EAW22244.1| threonyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 530

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 143/422 (33%), Gaps = 65/422 (15%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 81  YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 140

Query: 95  RLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 141 EVKGRGATGEADGETGEDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEI 200

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R F   D + F   P+  K            +    GL    +   + P 
Sbjct: 201 SGALSGLTRVRRFHQDDGHIF-CRPQQIKGEIASALGFVDMVMTTFGLGPYRLVLSTRPE 259

Query: 203 GG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                S E    A+T   +   +          +                     A    
Sbjct: 260 KDFIGSLELWDSAETQLREALDNSGREWAMNEGDG--------------------AFYGP 299

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGI 319
             + +L D   +  ++S   +++     FG +Y +            G+   V +     
Sbjct: 300 KIDIQLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEGEEDYNPATPGRATPVLVHRANF 359

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD- 378
           G++    A++   + G    WP  ++P +  ++ +   D+      ++  A++S  G   
Sbjct: 360 GSLERFLALLIEQYAG---RWPFWLSPRQGIILTVNQ-DEAVLQQAQEAAAKIS--GFRP 413

Query: 379 ----------------------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                                 +  D   + +G +   A  + + L  I+G K V+DS +
Sbjct: 414 HVASKDNVTSPKPLSSVDSTYLIDVDTSSQTLGKKIQRAKQMKYNLIFILGPKDVADSSI 473

Query: 417 EI 418
            +
Sbjct: 474 TV 475


>gi|83282659|ref|XP_729866.1| prolyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488909|gb|EAA21431.1| prolyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 728

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 139/422 (32%), Gaps = 69/422 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++++ +I  +   G Y   P      + +      E  +        P  +    L  
Sbjct: 250 QVIVKSELIEYYDISGCYILRPASYYIWECIQTFFNNEIKKLDVENSYFPLFVTKNKLEK 309

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D    + +   PT E +M  +F   I+S+R+LP    Q   
Sbjct: 310 EKNHIEGFSPEVAWVTKYGDTNLPEEIAIRPTSETIMYSVFSKWIRSHRDLPLKLNQWNT 369

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++     E           +   +F  L +       
Sbjct: 370 VVRWEFKQPTPFIRTREFLWQEGHTAHKNEE----------EAVKMVFDILDIYRRW--- 416

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                      +      I    ++ +     N      T    
Sbjct: 417 -------------------------YEECLAVPVIKGIKSEGEKFGGANFTSTNETFI-- 449

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                               S R I+     Y GT ++      F+       +V   S+
Sbjct: 450 ------------------SESGRAIQAATSHYLGTNFAKMFKIEFEDEQENKQFVHQTSW 491

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSK 374
           G    R +  +I    D KG+I P +VA +K+ ++ I      +    + C+ I   L  
Sbjct: 492 GCT-TRSIGVMIMMHSDNKGLILPPNVAKYKVVIVPILYKNTDETAIFNYCKDIEKVLKN 550

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
              +  +DD      G +F   +L G P+++ VG K + ++      R    + ++  E 
Sbjct: 551 AQINCVFDDRDLYSPGYKFNHWELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKES 610

Query: 434 VI 435
           V+
Sbjct: 611 VL 612


>gi|292655033|ref|YP_003534930.1| prolyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291371489|gb|ADE03716.1| prolyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 488

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 141/416 (33%), Gaps = 68/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G     P G    +++   +  E  +TG      P       L  E    + +  E+  
Sbjct: 39  SGFIVTRPRGYALWESIQNYLDGEFKKTGVQNAYFPLFIPESYLEREKDIVEGFDPEVAW 98

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +  ++ +   PT E ++       ++S+R+LP    Q     R E        R
Sbjct: 99  VTHGGHEELEERLAVRPTSESIIAPYMAQWVRSHRDLPLRVNQWASVVRWEATETKPFFR 158

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           ++EFL ++ ++   T +G+          Y  ++  +   +IP+       G    H+  
Sbjct: 159 TKEFLWQEGHTAHETRDGAWDETMTRLSQYQSLYEDV--LAIPVLR-----GAKPEHDKF 211

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             ADT  T    +       + +  + +                                
Sbjct: 212 PGADT--TTTVEALMPDGKSVQAGTSHY-------------------------------- 237

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                       +G  F      +     T+   D  +      S+G+ + R + A+I +
Sbjct: 238 ------------LGTSF------AEAFDLTYTTEDEDEEPAHTTSWGL-SWRSLGALIMT 278

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-I 388
             D +G++ P ++AP ++ ++ I   D  +   D  + I   L   G  V  D   E+  
Sbjct: 279 HSDDQGLVLPPTIAPEQVVIVPIWQADTQEKVLDYAKDIAEDLEDAGVRVELDARDERNP 338

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   +L G P++  +G   V D  V   HR  G   ++  E +      +F  
Sbjct: 339 GFKFNEWELKGVPVRFEIGPNEVDDDVVTAVHRPDGDSVELDRENIAEAVQAQFDE 394


>gi|145640808|ref|ZP_01796390.1| prolyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274322|gb|EDK14186.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 430

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 222 DGKHYFNVNWERDVAMPEVFDLRNVVEGDRSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 281

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAH 357
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +GIIWP D +APF ++++ +  H
Sbjct: 282 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 341

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  VI+G K + + ++
Sbjct: 342 KSESVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVIIGEKNLDNGEI 401

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 402 EYKNRRTGEKEMISKDQLLSVLNEKLGN 429



 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 58/82 (70%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  Y  IF+RLGL    ++A++G I
Sbjct: 1   MRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQVYSNIFNRLGLDFRAVQADTGSI 60

Query: 203 GGDLSHEFIVLADTGETQVFCS 224
           GG  SHEF VLA +GE  V  S
Sbjct: 61  GGSASHEFQVLASSGEDDVVFS 82


>gi|28493229|ref|NP_787390.1| threonyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|73919842|sp|Q83GK5|SYT_TROWT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28476270|gb|AAO44359.1| threonyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 640

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 138/453 (30%), Gaps = 46/453 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +      D      +L L + +  +   G+  +   G      +    R      G
Sbjct: 213 YLDRVELAKLVDHRKLGKELDLFS-LPDEIGPGLALFHVKGGIIRSEMEQYARLRHLEEG 271

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRN----DKAMIYGPTHEEVMTDIFR 119
              +  P +   DL+  SG    YG+ M      D++           P +    + +F 
Sbjct: 272 YNFVYSPHITKRDLFERSGHLQWYGQSMFPPMRLDKDSCSQGFDYYLKPMNCPFHSLVFS 331

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP    +    +R E      G+ R R     DA+ +  T E  +   +K  
Sbjct: 332 SQPRSYRQLPLRLAEFGTVYRYEQSGAIHGLARVRGLTQDDAHIY-ATRESFEDEVSKAL 390

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              + +    GL    +   +    G    S E    A     +V           P   
Sbjct: 391 QFTISLLGDYGLDQFYIEISTRDASGKFLGSDEDWAYATHILQKVAQDSGLQTRDDPG-- 448

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++      FG  Y+ 
Sbjct: 449 ------------------GAAFYGPKISVQAKDAIGRYWQMSTIQLDFNLPERFGLFYT- 489

Query: 297 PMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     G+     M      G+     AV+   + G     P  ++P ++  + + 
Sbjct: 490 -------DRAGERKRPIMVHRALFGSFERFFAVLTEHYAGAF---PPWLSPEQVVALPVT 539

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +         E+  +R S        D M +++  +         P  ++ G + +++  
Sbjct: 540 S---AHIPYLEEFVSRFSSRLIRARVDYMQDRLPKKIRSYVKEKIPFVLVAGDRDLTNRT 596

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           V I+ R      D+ +++  +         + +
Sbjct: 597 VAIRFRDGTQISDLPIQKCFDGICASIDRKKQI 629


>gi|255535772|ref|YP_003096143.1| prolyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341968|gb|ACU08081.1| Prolyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 491

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 150/446 (33%), Gaps = 86/446 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + +   + +    TG      P      L+ 
Sbjct: 16  NELVVKADLAENSGVRGCMVIKPYGYAIWEKMRDEMDKRFKETGHENAYFPIFIPKSLFE 75

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ +I  PT E ++ + +++ 
Sbjct: 76  AEEKNAEGFAKECAVVTHYRLKTDPNDPKKLVVDPEAKLEEELIVRPTSEAIIWNTYKNW 135

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R E       MR+R FL    + +                  
Sbjct: 136 VQSYRDLPILINQWANVVRWE-------MRTRLFLRTAEFLWQE---------------- 172

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                           A     +     + M         +F  
Sbjct: 173 -----------------------------GHTAHATRDEALEETEKMLDVYADFTENFMA 203

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I  +  I  +      A      E L            + ++ G   + G  +       
Sbjct: 204 IPVIRGIKTESERFAGADETYCIEAL--------MQDGKALQAGTSHFLGQNFGKAFDVK 255

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV- 360
           F   +GK  +    S+G  + R+V A+I +  D  G++ P S+AP ++ ++ I   ++  
Sbjct: 256 FTNREGKIEHAWGTSWG-TSTRLVGALIMTHSDDLGLVLPPSLAPIQVVIVPIFKGEEQL 314

Query: 361 --CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    + A+L   G  V +D+  E + G +FA  +L G P+++ +G++ + +  VE
Sbjct: 315 SQIDAVAYDLQAKLKAKGISVKYDNRTENKPGWKFAEYELKGVPIRIAMGARDLENKTVE 374

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           I  R    +E   LE + NY      
Sbjct: 375 IARRDNLTKETQPLEGIENYIEELLK 400


>gi|71991342|ref|NP_001022777.1| Prolyl tRNA Synthetase family member (prs-1) [Caenorhabditis
           elegans]
 gi|459009|gb|AAA50660.1| Prolyl trna synthetase protein 1, isoform a [Caenorhabditis
           elegans]
          Length = 581

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 144/433 (33%), Gaps = 71/433 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  MI  +   G Y   P      +++         + G      P  + +A L  
Sbjct: 105 EVITKAEMIEYYDVSGCYVLRPWSFAVWESIQEWFDSGIKKLGVKNCYFPMFVSNAALER 164

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +         + +   PT E VM   ++  ++S+R+LP    Q   
Sbjct: 165 EKTHIADFAPEVAWVTRAGNSEMAEPIAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCN 224

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++    P  ++            +F  L L    +  
Sbjct: 225 VVRWEFKHPTPFLRTREFLWQEGHTAFANPADAEK----------EVFQILDL-YAGVYT 273

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +   I                             +    ++ +     +           
Sbjct: 274 DLLAI---------------------------PVVKGRKSEKEKFAGGDFTTTVEAYVAC 306

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMG 315
                                 RGI+     + G  +S     +++    +G+  +    
Sbjct: 307 NG--------------------RGIQGATSHHLGQNFSKMFDISYEDPAKEGERAFAWQN 346

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARL 372
           S+G+ + R + A++    D KG++ P  VA  ++ ++ +       Q   DA +K+   L
Sbjct: 347 SWGL-STRTIGAMVMIHGDDKGLVLPPRVAAVQVIVVPVGFKTENKQSLFDAVDKVTKDL 405

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G     D       G +F   +L G P++  VG   ++ ++V    R  G ++ +SL
Sbjct: 406 VADGVKAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQVTAVIRHNGEKKQLSL 465

Query: 432 EEVINYASHRFSN 444
           E +          
Sbjct: 466 EGLSKTVKSLLDE 478


>gi|28572657|ref|NP_789437.1| threonyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|73919841|sp|Q83HM3|SYT_TROW8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28410789|emb|CAD67175.1| threonyl-tRNA synthetase [Tropheryma whipplei TW08/27]
          Length = 640

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 138/453 (30%), Gaps = 46/453 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +      D      +L L + +  +   G+  +   G      +    R      G
Sbjct: 213 YLDRVELAKLVDHRKLGKELDLFS-LPDEIGPGLALFHVKGGIIRSEMEQYARLRHLEEG 271

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRN----DKAMIYGPTHEEVMTDIFR 119
              +  P +   DL+  SG    YG+ M      D++           P +    + +F 
Sbjct: 272 YNFVYSPHITKRDLFERSGHLQWYGQSMFPPMRLDKDSCSQGFDYYLKPMNCPFHSLVFS 331

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP    +    +R E      G+ R R     DA+ +  T E  +   +K  
Sbjct: 332 SQPRSYRQLPLRLAEFGTVYRYEQSGAIHGLARVRGLTQDDAHIY-ATRESFEDEVSKAL 390

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              + +    GL    +   +    G    S E    A     +V           P   
Sbjct: 391 QFTISLLGDYGLDQFYIEISTRDASGKFLGSDEDWAYATHILQKVAQDSGLQTRDDPG-- 448

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                               A      + +  D++    ++S   ++      FG  Y+ 
Sbjct: 449 ------------------GAAFYGPKISVQAKDAIGRYWQMSTIQLDFNLPERFGLFYT- 489

Query: 297 PMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     G+     M      G+     AV+   + G     P  ++P ++  + + 
Sbjct: 490 -------DRAGERKRPIMVHRALFGSFERFFAVLTEHYAGAF---PPWLSPEQVVALPVT 539

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +         E+  +R S        D M +++  +         P  ++ G + +++  
Sbjct: 540 S---AHIPYLEEFVSRFSSRLIRARVDYMQDRLPKKIRSYVKEKIPFVLVAGDRDLTNRT 596

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           V I+ R      D+ +++  +         + +
Sbjct: 597 VAIRFRDGTQISDLPIQKCFDGICASIDRKKQI 629


>gi|227872012|ref|ZP_03990397.1| threonine--tRNA ligase [Oribacterium sinus F0268]
 gi|227842155|gb|EEJ52400.1| threonine--tRNA ligase [Oribacterium sinus F0268]
          Length = 627

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 153/474 (32%), Gaps = 77/474 (16%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  LQE   RD +    +L L   M  + + G+  WLP G K    + A  R  Q +
Sbjct: 172 KEHLKWLQEAQERDHKKLGSQLDLF--MFDETAPGMPYWLPRGWKMYQALLAYSRSVQAK 229

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------------------AD----- 98
            G  E+S P + +  LW+ SG +  Y   M  +                     D     
Sbjct: 230 HGYTEISAPLINNKKLWLISGHWAHYINNMFMVPGISGWLKADADLSGVLEHPTDASLGE 289

Query: 99  --------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                          N   M   P +       ++   +SY+ LP  + +  +  R E  
Sbjct: 290 KIVKIQAGSVIYNRENIDTMAAKPMNCPNAMITYKRRNRSYKELPIRYSEYDVLHRKEKS 349

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +  G+ R +EF   D ++F +     +     +      ++   G+        + P  
Sbjct: 350 GQMNGLFRVQEFRQDDDHTFVM-ESQIEAEIADIISIADEVYKTFGVTYR-AELSTRPDD 407

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E    A+    ++   K                        E      A      
Sbjct: 408 FMGDIEVWDRAEAALKKILTDKYG------------------EGGFEINEGDGAFYGPKI 449

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + ++ D+L    +     ++      FG  Y     +T          V +     G++ 
Sbjct: 450 DLQIKDALGREWQCGTIQLDFQLPHNFGLTYQTAEGST-------AMPVVIHRAIYGSLE 502

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I  +  G    W   ++P ++ ++ I+   +   D  +KIY  LS +G     D 
Sbjct: 503 RFIGIIIENFKGSFPFW---LSPEQVGIVPIR---EEHNDYGKKIYEALSDMGIRAEIDY 556

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-DMSLEEVIN 436
             + +  +         P  +++G K + +  V I  R +  +  ++ L+  + 
Sbjct: 557 SDKNMKEKIKTYKNYKNPYILVLGDKEMEEKAVSINMRGSNKQINNVPLDAFLK 610


>gi|167752565|ref|ZP_02424692.1| hypothetical protein ALIPUT_00818 [Alistipes putredinis DSM 17216]
 gi|167659634|gb|EDS03764.1| hypothetical protein ALIPUT_00818 [Alistipes putredinis DSM 17216]
          Length = 494

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 150/446 (33%), Gaps = 85/446 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++ G+    + +G     P G    + + A + +    TG      P       +  E
Sbjct: 22  LVVKAGLAENSAVRGCMVIKPYGYAIWEKMQAALDKMFKDTGHQNAYFPLFIPKSFFSKE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + ++  I+S
Sbjct: 82  ADHVEGFAKECAVVTHYRLKNDPEGKGVVVDPDAKLEEELIVRPTSETIIWNTYKGWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E       MR+R         F  T E                
Sbjct: 142 YRDLPILCNQWANVVRWE-------MRTR--------LFLRTAEFLWQE----------- 175

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                        A   + +       M         ++  +  
Sbjct: 176 --------------------------GHTAHATKEEAIEEATRMIHVYQKFVEEWMGVPV 209

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +            A   +  E L            + ++ G   + G  ++      +  
Sbjct: 210 IVGHKSPNERFAGAVDTLTIEAL--------MQDGKALQSGTSHFLGQNFAKAFDVQYIN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ LI I   ++  R  
Sbjct: 262 KEGKLEYVWATSWGV-STRLMGALIMAHSDNNGLVLPPKLAPIQVVLIPIYKGEEQMRQI 320

Query: 365 CEKI---YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            E++      L   G  V  DD    + G +FA  +L G P+++ +G + + +  +E+  
Sbjct: 321 VERLRTIAEELKSKGLSVKIDDRDNVRSGFKFAEYELKGVPVRLALGPRDLENGTIELVR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R T  +E +  E + +  +      +
Sbjct: 381 RDTLEKETVPQEGLTDRVAALMDEIQ 406


>gi|253581047|ref|ZP_04858308.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847710|gb|EES75679.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 479

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 142/413 (34%), Gaps = 68/413 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  +  P G    +N+   +      TG   + +P      L   E    + +  E+  
Sbjct: 38  KGCMAIKPAGYAIWENIQHELDRRFKETGVQNVYMPIFIPESLLQKEKDHVEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D   + +   PT E +  D +   I+S+R+LP  + Q     R E +     +R
Sbjct: 98  VTHGGLDPLQERLCVRPTSETLFCDFYAKEIQSHRDLPKVYNQWCSVVRWE-KTTRPFLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEF 210
           SREFL ++ ++   T E ++    +M   Y       L +  I         G     E 
Sbjct: 157 SREFLWQEGHTAHATAEEAEERTIQMLNLYADFCEEVLAIPVIK--------GQKTDKEK 208

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+                            +              +   HN     +
Sbjct: 209 FSGAEA---------------------------TYTIESLMHDGKALQSGTSHNFGDGFA 241

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                + + +  ++ ++                            S+G+   R++ A+I 
Sbjct: 242 RAFGIQYTDKENKLQYVHQ-------------------------TSWGM-TTRMIGAIIM 275

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D  G++ P  +AP +  +I I+   +   +  ++++A L   G  V  DD  +  G 
Sbjct: 276 VHGDNSGLVLPPRIAPVQAVIIPIQQRKEGVLEKADEMFAALKAAGVRVKVDDTDKSPGF 335

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +FA  ++ G P+++  G K + + +  I  R T  +  ++ +E++        
Sbjct: 336 KFAEQEMRGIPIRIECGPKDIENGQAVICRRDTREKYTVTFDELVEKVQEILE 388


>gi|110005463|emb|CAK99785.1| prolyl-trna synthetase protein [Spiroplasma citri]
          Length = 474

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 142/414 (34%), Gaps = 70/414 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  +N+  I+  E  + G   +  P L    L+  E    + +  E+  
Sbjct: 35  KGTTIFKPYGYEIWENIQKILDAEFKKNGVKNVYFPLLIPKTLFNKEKEHIEGFSPEIAT 94

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E +    F   I+ YR+LP  + Q     R E +     +R
Sbjct: 95  VTKVGDKVLDEELYIRPTSEVLFGTFFSKEIQGYRDLPLLYNQWVNVLRWE-KTTRPFLR 153

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEF 210
           + EFL ++ ++   + + ++    K+   Y       L L  I         G     E 
Sbjct: 154 TSEFLWQEGHTIHSSKQEAQQFTLKILDIYATFAEKTLLLPVIK--------GQKTEREK 205

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+  ET    S  +    +    + +                               
Sbjct: 206 FAGAE--ETYTIESLMYDGQALQCGTSHY------------------------------- 232

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                              FG  +S      F        Y    S+G+ + R++  +I 
Sbjct: 233 -------------------FGQNFSKAFDIKFANQKNTLEYAYSTSWGV-STRLIGGIIM 272

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +  D  G++ P  +AP +I ++ I         A +++  +L K       D   +  G 
Sbjct: 273 THSDDNGLVLPPQIAPIQIMILPINNDSNEQLSAAQQLQKKLQK--YRCEIDQSDKGFGF 330

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +   A++ G PL++ +G + ++  +V I  R T  +  +S  EV    S   + 
Sbjct: 331 RATNAEIKGIPLRIEIGPRDLAQQQVTIARRDTFEKITVSWAEVEKVVSDLLAQ 384


>gi|23098021|ref|NP_691487.1| prolyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
 gi|81846123|sp|Q8ESQ5|SYP_OCEIH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22776245|dbj|BAC12522.1| prolyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
          Length = 478

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 155/448 (34%), Gaps = 77/448 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + A++  +  +  T +I           P G    +N+   +      TG 
Sbjct: 19  FAQWYTDVVKQADLVDYGQVRGTMIIK----------PYGYAIWENIKNELDRMFKETGH 68

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSH 121
             ++ P      L   E    + +  E+  +    ++     +   PT E +  D + ++
Sbjct: 69  TNVAFPLFIPESLLQKEKDHVEGFAPEVAWVTHGGEEELTERIAVRPTSEVLFCDYYSNN 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I SYR+LP  + Q     R E         +R FL      F      + H+ ++     
Sbjct: 129 IHSYRDLPKLYNQWGNVVRWEKT-------TRPFLRSSE--FHWQEGHTAHATDE----- 174

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                  + + E   + +T        +      +    TD + 
Sbjct: 175 -----------------------EATEETNRMLET--YAKLVEEYLAVPVLKGRKTDKEK 209

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                                     F    E      + ++ G   +FGT ++      
Sbjct: 210 FAG---------------------AKFTLTIEALMHDGKALQSGTSHHFGTGFAEAFDIN 248

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   DGK  +V   S+G+ + R++ A+I    D +G++ P  +AP +  ++ I  H +  
Sbjct: 249 YLDKDGKSQFVHQTSWGL-STRIMGALIMVHGDNRGLVVPPKIAPTQAMIVPIAQHKEGV 307

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L+KV   V  D   +  G +F   ++ G P++V +G K +   +V +  R
Sbjct: 308 LDKAYELRDKLAKV-ARVDIDGSDKMPGWKFNEYEMKGIPVRVEMGPKDIEKEQVVLVRR 366

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
            TG +E + + EV           +  L
Sbjct: 367 DTGEKEFVPVAEVETRLVELLDEVQSNL 394


>gi|195144990|ref|XP_002013479.1| GL24160 [Drosophila persimilis]
 gi|194102422|gb|EDW24465.1| GL24160 [Drosophila persimilis]
          Length = 1725

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 144/448 (32%), Gaps = 76/448 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ +  MI  +   G Y            +      E  R G  E 
Sbjct: 1229 EATKEENLPDWYSQVITKGEMIEYYDVSGCYILRHWSFAIWKFIKQWFDAEITRMGVKEC 1288

Query: 70   SVP-TLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P  +  A L  E      +  E+  +    D    + +   PT E VM   +   I+S
Sbjct: 1289 YFPIFVSKAVLEKEKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWIQS 1348

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            YR+LP    Q     R E +     +R+REFL ++ ++          ++     +   +
Sbjct: 1349 YRDLPIRLNQWNNVVRWEFKHPQPFLRTREFLWQEGHT----------AFASQEEAVKEV 1398

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                              +  +       +    T+ +    
Sbjct: 1399 LDILDL----------------------------YALVYTHLLAIPVVKGRKTEKEKFAG 1430

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      ++ 
Sbjct: 1431 GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIVYED 1470

Query: 305  AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQ 359
             +  +  YV   S+GI   R +  +I    D +G++ P +VA  +  ++     +   D+
Sbjct: 1471 PETQQKKYVFQNSWGIT-TRTIGVMIMVHADNQGLVLPPNVACIQAIVVPCGITVNTKDE 1529

Query: 360  V---CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  DAC+K+   L   G     D       G +F   +L G PL++ VG K +   +
Sbjct: 1530 ERAQLLDACKKLEQTLVGAGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQ 1589

Query: 416  VEIKHRLTGIREDMSLEEVINYASHRFS 443
            +    R TG +  + L +V    S    
Sbjct: 1590 LVAVRRDTGEKITLPLADVEKKISALLE 1617


>gi|330935757|ref|XP_003305117.1| hypothetical protein PTT_17864 [Pyrenophora teres f. teres 0-1]
 gi|311318063|gb|EFQ86830.1| hypothetical protein PTT_17864 [Pyrenophora teres f. teres 0-1]
          Length = 528

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/466 (15%), Positives = 147/466 (31%), Gaps = 81/466 (17%)

Query: 22  SHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
            H+ + +T    +   +S G    LP G      + + +R +  + G  E+  P +    
Sbjct: 58  DHRTLAQTHNLFITSPYSPGSPLILPNGAYVFQKLQSFLRAQYPQFGFQEVITPIIYKKS 117

Query: 79  LWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           LW +SG +++Y ++M  +  R             D      P +      +FR  IKSYR
Sbjct: 118 LWEKSGHWENYAEDMFSVQGRGTTAQIPEAEGGEDGEFGLKPMNCPGHCLLFRDEIKSYR 177

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP          R+E+     G+ R R F   DA+ F   P+       +       ++
Sbjct: 178 DLPVRLADFSALHRNEISGALTGLTRVRRFHQDDAHIF-CRPDQILAEIEQTLKFVAMVY 236

Query: 186 HRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              GL    +   + P      + E    A+   T    +          +         
Sbjct: 237 RTFGLGPYKLLLSTRPKDSFIGTVEEWDRAEEQLTTALNNIGSEWAINEGDG-------- 288

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  L DS  +  + +   ++    F    ++ L   A+ + 
Sbjct: 289 ------------AFYGPKIDIILKDSNGKEHQTATIQLD----FQLPQRFDLQYQASPEE 332

Query: 305 -ADGK------------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
              G                V +     G++    A++   + GK   W   ++P   ++
Sbjct: 333 LEAGSQTSMDAGLDQTLRRPVIVHRAIYGSIERFMALLIEHYAGKYPFW---LSPRPATI 389

Query: 352 INIKAHDQVCRDA--CEKIYARLSKVG-------------------CDVFWDDMGEQIGS 390
           +++  + +V       + + + L                         V  D     +  
Sbjct: 390 LSLNDNAEVLEHVSRVQSVLSGLKAADPPEQVSTSLPKPLPLSTIQLPVDVDTSSRPLAK 449

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVE--IKHRLTGIREDMSLEEV 434
           + A A    +   ++VG   V    V   + ++ +     + L+E 
Sbjct: 450 KIAEARTKKYNHIIVVGLNEVQTGSVNMQVVNQPSPEATFLELQEA 495


>gi|297201097|ref|ZP_06918494.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197712117|gb|EDY56151.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 413

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 146/440 (33%), Gaps = 48/440 (10%)

Query: 22  SHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R   +         G+  WLP G      +   +RE +   G   +  P L   
Sbjct: 6   DHRRLGRELDLFDTDPLMGAGLPYWLPDGAVVRHVLEEYVRETERAAGYRHVYSPVLGKR 65

Query: 78  DLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           +L+  SG +D Y  +M         +   + ++  P+       I+RS   SYR LP  F
Sbjct: 66  ELYEISGHWDHYSDDMFPPMRLGGGEGEGEEVVLRPSLCPHHALIYRSRSHSYRELPLRF 125

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++   +R EL     G+ R R   + DA+ F  TPE +            R +  LG++
Sbjct: 126 AELGGMYRSELSGVLGGLTRVRSIQLNDAHIF-CTPEQAVAEARAALALIRRAYDDLGIR 184

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +   R      G                     K   D  +    T   + +      E 
Sbjct: 185 AARYRLSLPGDGD-------------------GKFVPDPELWRRATALLEEVLDGIEYES 225

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                A      + ++ D       +S   I+                  + G DG+ H 
Sbjct: 226 VEGEAAFYGPKIDVQISDPAGRESTLSTVQIDFHQPER--------FDLHYIGRDGRKHR 277

Query: 312 VQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             M     IG++    A +  +H G   +W   +AP ++ ++ +    +   +    +  
Sbjct: 278 PVMVHRSIIGSVERAVAHLIEAHGGAFPVW---LAPVQLVILPVA---EEQEERAHDLVR 331

Query: 371 RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           R    G        G   +G++   A L   P Q ++G +        ++ R       +
Sbjct: 332 RAEARGIRAELSGPGHGTLGARVRAARL--VPYQAVIGQREADAGCAAVRLRDGRRPGAV 389

Query: 430 SLEEVINYASHRFSNNRPVL 449
            ++E++     R  +    L
Sbjct: 390 PVDELLERIGARAGDRGAEL 409


>gi|327262448|ref|XP_003216036.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like isoform 2
            [Anolis carolinensis]
          Length = 1611

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 140/450 (31%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      + +      E  + G    
Sbjct: 1116 EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAFAVWEAIKDFFDSEIKKLGVENC 1175

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1176 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1235

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E           +   +
Sbjct: 1236 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATYE----------EAAEEV 1285

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L +                                +      +    T+ +    
Sbjct: 1286 LQILDLYAR----------------------------VYEELLAIPVVKGRKTEKEKFAG 1317

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1318 GDYTTTVEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1357

Query: 305  A--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  Y    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1358 PRTPGEKQYAYQNSWGLT-TRTIGVMTMIHGDNMGLVLPPRVACVQVVIIPCGITNTLSE 1416

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A  +     C +   RL         D       G +F   +L G P+++ VG + +  +
Sbjct: 1417 ADKEALMTKCSEYRKRLLSANIRSRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSN 1476

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +   +  E ++   H    
Sbjct: 1477 QFVAVRRDTGEKMTFAENEAVDQLRHILEE 1506


>gi|163786094|ref|ZP_02180542.1| prolyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877954|gb|EDP72010.1| prolyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
          Length = 492

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 161/452 (35%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A +      TG +    P      L+ 
Sbjct: 17  NELVVKADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETGHVNAYFPLFVPKSLFE 76

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ +I  PT E ++ + ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLENDPDKEGKLRVDPNAKLEEELIVRPTSEAIIWNTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R FL    + +                  
Sbjct: 137 IQSYRDLPILINQWANVVRWE-------MRTRLFLRTAEFLWQE---------------- 173

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                 G  +H   V A           + M+        +F  
Sbjct: 174 ----------------------GHTAHATKVEA-------LEEAEQMNNVYAEFAENFMA 204

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I  +  +  +      A      E L            + ++ G   + G  ++      
Sbjct: 205 IPVIKGVKTESERFAGAEETFCIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  +V   S+G+ + R++ A+I +  D KG++ P ++APF++ ++ I  +D+  
Sbjct: 257 FTNNEGKLDHVWATSWGV-STRLMGALIMTHSDDKGLVLPPNLAPFQVVIVPIYKNDEQF 315

Query: 362 R---DACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    I   L  +G    +D     + G++FA  +L G PL++ +G K + ++ VE
Sbjct: 316 DLISKKANTISKELKALGVSCKFDKRSTHRPGAKFAQHELQGVPLRIAIGPKDLENNTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E + ++++           +  L
Sbjct: 376 LARRDTLTKEIVQMDDLTQTIKGLLEKIQNEL 407


>gi|149235762|ref|XP_001523759.1| hypothetical protein LELG_05175 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452738|gb|EDK46994.1| hypothetical protein LELG_05175 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 688

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 151/440 (34%), Gaps = 70/440 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           ++++++ M+  +   G Y   P      + +      +    G      P   S   L  
Sbjct: 201 QVVVKSEMLDYYDVSGCYILRPNSYAVWETIQDYFNTKIKALGVQNAYFPMFVSQKVLEK 260

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q   
Sbjct: 261 EKDHIEGFAPEVAWVTRAGSSELEEHIAIRPTSETVMYPYYAKWIRSHRDLPIKLNQWNS 320

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++  L  + ++    ++   Y  I+    L ++P+  
Sbjct: 321 VVRWEFKHPQPFLRTREFLWQEGHTAHLYKKEAEEEVLQILDYYAAIYEE--LLAVPV-- 376

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                         V     E + F   D+                ++   +        
Sbjct: 377 --------------VKGKKTENEKFAGGDY--------------TTTVEGFIPATGRGIQ 408

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +  H  + F  +      S  G E G +F                           S+
Sbjct: 409 GGTSHHLGQNFSKMFNMSVESPEGPEKGRLF-----------------------AYQNSW 445

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYA 370
           G+ + RV+  ++ +  D KG++ P  VA  ++ +I +           +        I +
Sbjct: 446 GL-STRVIGVMVMTHSDNKGLVLPPRVAQTQVVVIPVGITAKTSAEQREQINKGAADIES 504

Query: 371 RLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           RL K G  V  D       G +FA  +L G PL+V  G K +   +V    R  G + ++
Sbjct: 505 RLKKAGIRVTGDYRDSYNPGWKFADWELKGVPLRVEFGPKDLESEQVTAVRRNDGQKLNV 564

Query: 430 SLEEVINYASHRFSNNRPVL 449
            L  + +  +      +  L
Sbjct: 565 KLAGLESSIAEVLEKIQADL 584


>gi|187924092|ref|YP_001895734.1| Proline--tRNA ligase [Burkholderia phytofirmans PsJN]
 gi|187715286|gb|ACD16510.1| Proline--tRNA ligase [Burkholderia phytofirmans PsJN]
          Length = 380

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 121/441 (27%), Positives = 196/441 (44%), Gaps = 64/441 (14%)

Query: 1   MRRSKYFL--PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M+ S+ F      +++    E+    L  +  ++HQ + G+YSW+ LG +A   V +++R
Sbjct: 1   MKFSQQFFANSFFEQDNTRLELTD--LARKACLVHQDAAGLYSWMSLGLRAQRRVESVVR 58

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  R G  E+ +  LQ ADLW ++GR D+YG E++RL  R+ +    G T EE+ T + 
Sbjct: 59  EEMERAGFCEIQMSLLQDADLWRQTGRLDAYGDELMRLTSRSGRLFCLGATCEELATQMV 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+H     ++    YQ   K+RDELR R G+ R++EF+MKD YSF+ T +G++ +Y  + 
Sbjct: 119 RTHYNRT-DMSLGLYQFGNKYRDELRTRGGLARAKEFIMKDGYSFNATEDGARAAYEAVR 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +YLRIF RLGL +I   +++G IGG  S EF V+++ GE +                TD
Sbjct: 178 EAYLRIFRRLGLDAIVKSSDNGEIGGQSSEEFHVVSELGEDE----------------TD 221

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
               +    I +       A   V+ +  F  +       +R               L M
Sbjct: 222 GQTSLECAHIFDLGDRYSKAMGLVNAKGKFVRMGCFGVGISR---------------LAM 266

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
               +  D +  +   GS       VV  VI+     +                      
Sbjct: 267 LLLSRQRDERGFW---GSESFNTFDVVLTVIDWERQER---------------------Q 302

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++ A     G  V  DD   Q G + A A+L+    +V+V  K ++  + E 
Sbjct: 303 EAAETLRRELQA----AGLSVLMDDRLAQAGKKLADAELIACRQRVVVSGKALASGRFEW 358

Query: 419 KHRLTGIREDMSLEEVINYAS 439
             R T  R D S  E++   +
Sbjct: 359 MDRRTFARRDASAAEIVTLCA 379


>gi|13541912|ref|NP_111600.1| prolyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|74581167|sp|Q979Q5|SYP_THEVO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14325343|dbj|BAB60247.1| tRNA synthetase Pro [Thermoplasma volcanium GSS1]
          Length = 462

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 157/426 (36%), Gaps = 76/426 (17%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGK 91
               KG+  W P G K +  ++ IIR   ++    E++ P L S   L VE      +  
Sbjct: 25  RYPIKGMNVWRPYGWKIMKLIDNIIRNAVDKHSFDEVNFPVLISRGMLEVEFEHIRGFEN 84

Query: 92  EMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +     ++ ++ +   PT E  M  +F   ++S+ +LP   YQI   +R E +   
Sbjct: 85  EIYWVTKGGKEKLEEELALRPTSESAMYPMFSLWVRSHADLPLKIYQIVSVYRYETKHTR 144

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             +R R     + + F      +  SY                                 
Sbjct: 145 SFIRIR-----EIHFF--EAHTAHESYEDAEKQM-------------------------- 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E+ ++     T++  +             D                             
Sbjct: 172 DEYRIIW----TEIADALCLPFLYDQRPEWD-------------------KFPGAMYTIA 208

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++      S R +++G I  +GT +S      +   DG   YV   ++G+ + R++AA
Sbjct: 209 FDTV----MPSGRSLQIGTIHQYGTNFSKNYDIKYLKEDGTFEYVHQTTFGM-SERLLAA 263

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
           +I    D KG+I P ++AP ++ ++ I    +      + I   L+ +G     D+    
Sbjct: 264 IIGIHGDDKGLILPPAIAPIQVVIVPIPG--EGVERYAKDIETTLNGIGIRCHVDNRDNY 321

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI-------NYAS 439
             G ++   ++ G PL++ VG + + +  V +  R    ++ +  E+++       +   
Sbjct: 322 TPGYKYNDWEMRGVPLRIEVGERELKEKTVTLAARNIRGKKTVQREKLVYEVPDMLDLVK 381

Query: 440 HRFSNN 445
            + + +
Sbjct: 382 EKITED 387


>gi|213623005|ref|ZP_03375788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 523

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 105/326 (32%), Gaps = 38/326 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+          +        E   +   I 
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 467

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                                              R  + G +      +SLP  +SA++
Sbjct: 468 FTLYD---------------------------CLDRAWQCGTV---QLDFSLPSRLSASY 497

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAA 327
            G D +    V +    +G+M     
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIG 523


>gi|89890591|ref|ZP_01202101.1| prolyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89517506|gb|EAS20163.1| prolyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 492

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 152/452 (33%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A +      TG      P      L+ 
Sbjct: 17  NELVVKADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFE 76

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ ++  PT E ++ + ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLQNDPDNPGKLRVDPEAKLEEELVVRPTSEAIIWNTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R FL    + +                  
Sbjct: 137 IQSYRDLPLLINQWANVVRWE-------MRTRLFLRTAEFLWQ----------------- 172

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                               E     S          +  D   
Sbjct: 173 ------------------------------------EGHTAHSTKKEAIAEAEQMNDIYA 196

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             + N +           S+           E      + ++ G   + G  ++      
Sbjct: 197 DFAQNFMAIPVVKGLKTESERFAGADETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++ A+I +  D KG++ P ++AP ++ ++ I   D+  
Sbjct: 257 FTSKEGKQEYVWATSWGV-STRLMGALIMTHSDDKGLVLPPNLAPNQVVIVPIFKTDEQF 315

Query: 362 RD---ACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      ++   L   G  V +D     + G++FA  +L G PL++ +G++ + +  VE
Sbjct: 316 EEITTVVNELMKSLRLKGVTVKYDKRDTLRPGAKFAQHELQGVPLRIAIGARDLENGTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +   +++ + +         +  L
Sbjct: 376 LARRDTLSKVTTAIDGIEDKVVALLEEIQSSL 407


>gi|320335305|ref|YP_004172016.1| Prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756594|gb|ADV68351.1| Prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 488

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 155/455 (34%), Gaps = 79/455 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S  F     E  R A++A H  +           G     P G    + +   + +E  
Sbjct: 15  QSVDFNEWYNEVVRKADLADHSPV----------AGAMVMKPYGSAIWERIQRWLDDEFK 64

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
            TG   +  PTL        E+   + +  E+  +     +   +  +  PT E ++  +
Sbjct: 65  ATGHESLVFPTLIPMSFITKEADHVEGFAPELFTVNKIGTEVLAEPYVMRPTSETIIGHM 124

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   + SYR+LPF  YQ    FR E       +R++ FL                     
Sbjct: 125 WSQWLNSYRDLPFLHYQWGSVFRAE-------LRTKPFLRTS------------------ 159

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G  +    AE+         E + +                        
Sbjct: 160 -----EFYWHEGHTAHADEAEARA-------EVMAM-----------------------L 184

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +       + +         + S+     +     E      + ++ G   Y G  +S  
Sbjct: 185 NLYHRFCRDVLALPVVRGEKSASERFAGAVATYSIEGMMRDGKALQSGTSHYLGQNFSRA 244

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  + ++ Y    S+ I + R++ A+I +  D KG++ P  +AP ++ +I +   
Sbjct: 245 FDVKFQTREQREEYAHTTSWAI-SSRIIGALIMTHGDDKGLMLPPEIAPHQVVIIPVFRK 303

Query: 358 DQV--CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           D V       E +   L   G  V  D       G ++   +L G P+++ +G + +   
Sbjct: 304 DNVDQMIAEAEALAGELRAQGVRVKVDKRDGVTNGFKYNDWELKGVPVRMELGPRDLESG 363

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            V +K+R    +E +   E I+  + R S  +  L
Sbjct: 364 VVVVKNRTGDEKETLPRHEAISGMAARLSGIQQFL 398


>gi|149641567|ref|XP_001511623.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 1260

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 139/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      + +      E  + G    
Sbjct: 765  EAKKEENLADWFSQVITKSEMIEYYDVSGCYILRPWAYSIWEAIKDFFDAEIKKLGVENC 824

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 825  YFPMFVSQAALEREKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 884

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E           +   +
Sbjct: 885  HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATYE----------EAAEEV 934

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                                  +      +    T+ +    
Sbjct: 935  LQILDL----------------------------YAKVYEELLAIPVVKGRKTEKEKFAG 966

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 967  GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIIFED 1006

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      +  +
Sbjct: 1007 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVASVQVVVIPCGITNSLSE 1065

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              R+A    C +   RL      V  D       G +F   +L G P+++ VG + + +S
Sbjct: 1066 EDREALIKKCNEYRKRLLSANVRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNS 1125

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +  +   E           
Sbjct: 1126 QFVAVRRDTGDKITIVENEAETKLKTILEE 1155


>gi|70996464|ref|XP_752987.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66850622|gb|EAL90949.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159131721|gb|EDP56834.1| threonyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 535

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 144/420 (34%), Gaps = 61/420 (14%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 86  YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 145

Query: 95  RLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 146 EVKGRGATGEADGETGEDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEI 205

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R F   D + F   P+  K            +    GL    +   + P 
Sbjct: 206 SGALSGLTRVRRFHQDDGHIF-CRPQQIKGEIASALGFVDMVMTTFGLGPYRLVLSTRPE 264

Query: 203 GG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                S E    A+    +   +          +                     A    
Sbjct: 265 KDFIGSLELWDSAEAQLREALDNSGREWAMNEGDG--------------------AFYGP 304

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGI 319
             + +L D   +  ++S   +++     FG +Y +            G+   V +     
Sbjct: 305 KIDIQLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEGEEDYNPATPGRATPVLVHRANF 364

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKI--YARLSK 374
           G++    A++   + G    WP  ++P +  ++ +   +   Q  ++A  KI  Y  L  
Sbjct: 365 GSLERFLALLIEQYAG---RWPFWLSPRQGIILTVNQDEAVLQQAQEAAAKISGYRPLV- 420

Query: 375 VGCD----------------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            G D                +  D   + +G +   A  + + L  I+G K V+DS + +
Sbjct: 421 AGQDNATSPKPLSSVDSTYLIDVDTSSQTLGKKIQRAKQMKYNLIFILGPKDVADSSITV 480


>gi|302855151|ref|XP_002959075.1| hypothetical protein VOLCADRAFT_70347 [Volvox carteri f.
           nagariensis]
 gi|300255572|gb|EFJ39869.1| hypothetical protein VOLCADRAFT_70347 [Volvox carteri f.
           nagariensis]
          Length = 563

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 66/431 (15%), Positives = 127/431 (29%), Gaps = 65/431 (15%)

Query: 8   LPILQENPRDAEIASHKLM---LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L   ++   +A    H+ +   L    I +    G+  W P G      +    +E    
Sbjct: 175 LKAYEQLKEEAAKRDHRKLGTELNLFSIQENSGGGLVYWHPKGALVRHLIETFWKELHLS 234

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  ADLW  SG  + Y + M       D++    P +      +++    
Sbjct: 235 RGYQLVYSPHIAKADLWRTSGHLEFYKENMYEQMKVEDESYQLRPMNCPFHISVYKDGYY 294

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++   +R E      G+ R R F   DA+ F L P         +     
Sbjct: 295 SYRDLPLRLAELGTVYRYERSGTMHGLFRVRGFTQDDAHIFCL-PNQITSEIKGVLDLVE 353

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                 G     +   + P            A+    +   +K +               
Sbjct: 354 ETLGTFGFHEYEINLSTRPEKSVGDDVIWSTAEAALVEALGAKGWNYQVDAGGG------ 407

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + S   ++          ++LP    F
Sbjct: 408 --------------AFYGPKIDIKIRDAIGRKWQCSTIQLD----------FNLPERLVF 443

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF--KISLINIKAHDQV 360
                                 VA  +              V PF  ++ L+ +      
Sbjct: 444 ---------------------AVAITLTPFSAETPAFLNCCVLPFVRQVRLLTVN---DT 479

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +    + A++ + G  V    +GE  +G     A+    P+  +VG K    + + ++
Sbjct: 480 VAEYARDVAAQMKRAGIRVEV--VGEASMGKLIRNAEKAKIPVICVVGVKEADGNSLSVR 537

Query: 420 HRLTGIREDMS 430
                    + 
Sbjct: 538 LYGGKELGALP 548


>gi|156120825|ref|NP_001095559.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Bos taurus]
 gi|189083595|sp|A6QNM8|SYTC2_BOVIN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|151556799|gb|AAI48907.1| TARSL2 protein [Bos taurus]
 gi|296475416|gb|DAA17531.1| threonyl-tRNA synthetase-like 2 [Bos taurus]
          Length = 724

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 123/370 (33%), Gaps = 43/370 (11%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +E   +A    H+ + +       H  S G   +LP G    + +   IRE+ ++    E
Sbjct: 389 EELQEEARARDHRTIGKEQELFFFHDLSPGSCFFLPRGACIYNTLIDFIREQHHQRNFTE 448

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + S  LW  SG +  Y + M    D +       P +      +F    +S+R +
Sbjct: 449 VLSPNMYSCKLWEASGHWQHYSENMFTF-DIDKDTFALKPMNCPGHCLMFAHRPRSWREM 507

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P       +  R+E      G+   R F   DA+ F  T    +            ++  
Sbjct: 508 PIRLADFGVLHRNEPSGALSGLTCVRRFQQDDAHIF-CTVGQLEEEIKGCLQFLQSVYST 566

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P       E    A+                 P E            
Sbjct: 567 FGFSF-QLNLSTRPENFLGKIELWDEAEKQLQNSLMEFGKPWKINPGEG----------- 614

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + ++ D+L    + +   ++    F    +++L    T+   DG
Sbjct: 615 ---------AFYGPKIDLEIKDALGRYHQCATIQLD----FQLPIRFNL----TYVSKDG 657

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             K + V +    +G++  + A++  ++ GK   WP  ++P ++ +I +      C    
Sbjct: 658 DDKKNPVIIHQAILGSVERMIAILSENYGGK---WPFWLSPRQVMVIPVGP---TCEKYA 711

Query: 366 EKIYARLSKV 375
            +   +  + 
Sbjct: 712 LQWLEKRKRQ 721


>gi|189197599|ref|XP_001935137.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981085|gb|EDU47711.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 542

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 138/447 (30%), Gaps = 79/447 (17%)

Query: 22  SHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
            H+ + +T    +   +S G    LP G      + + +R +  + G  E+  P +    
Sbjct: 72  DHRTLAQTHNLFITSPYSPGSPLILPNGAYVFQKLQSFLRAQYPQFGFQEVITPIIYKKS 131

Query: 79  LWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           LW +SG +++Y ++M  +  R             D      P +      +FR  IKSYR
Sbjct: 132 LWEKSGHWENYAEDMFSVQGRGTTAQIPEAEGGEDGEFGLKPMNCPGHCLLFRDEIKSYR 191

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP          R+E+     G+ R R F   DA+ F   P+       +       ++
Sbjct: 192 DLPVRLADFSALHRNEISGALTGLTRVRRFHQDDAHIF-CRPDQILAEIEQTLKFVAMVY 250

Query: 186 HRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              GL    +   + P      + E    A+   T    +          +         
Sbjct: 251 RTFGLGPYKLLLSTRPKDNFIGTVEEWDRAEEQLTTALNNIGSEWAINEGDG-------- 302

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  L DS  +  + +   ++    F    ++ L   A+ + 
Sbjct: 303 ------------AFYGPKIDIILKDSNGKEHQTATIQLD----FQLPQRFDLQYQASPEE 346

Query: 305 -ADGK------------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
              G                V +     G++    A++   + GK   W   ++P    +
Sbjct: 347 LEAGSQTSMDAGLDPTLRRPVIVHRAIYGSIERFMALLIEHYVGKYPFW---LSPRPAII 403

Query: 352 INIKAHDQVCRDA--CEKIYARLSKVG-------------------CDVFWDDMGEQIGS 390
           +++  + +V       + + + L                         V  D     +  
Sbjct: 404 LSLNNNAEVLEHVSRVQSVLSGLKAADPPSQVSTSSPKPLPLSTIQLPVDVDTSSRPLAK 463

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVE 417
           + A A    +   ++VG   V    V 
Sbjct: 464 KIAEARSKKYNHIIVVGGNEVQTGSVN 490


>gi|290559900|gb|EFD93222.1| prolyl-tRNA synthetase [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 477

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 164/444 (36%), Gaps = 71/444 (15%)

Query: 13  ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           +  +  ++ S  +++++++ M+   + KG   + P G +  +     +  +    G    
Sbjct: 6   DVKKGEDLISWYNQVVIKSEMVDFSAIKGFAVYRPYGYEIWERSVQYLDSKFKSVGVRNA 65

Query: 70  SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             P L     L  E      +  E+  +      + D+ +   PT E +M D +   IKS
Sbjct: 66  YFPLLIPESILSKEKEHIKGFNPEVAWVTMGGDTKLDERLALRPTSETIMYDSYSKWIKS 125

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E +    ++R RE L ++ +    T E + ++  ++   Y + 
Sbjct: 126 YRDLPLLINQWNTMVRWETKETRLLLRGREVLWQEGHCVFRTEEEADNNAREILQFYKQY 185

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              +   +IP+ A         S +F    DT   +   S +FM     S N        
Sbjct: 186 MEEM--LAIPVIAGRK----SESEKFAGAVDTYTIEAVLSNNFMSQAATSHN-------- 231

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                                                         G  +S P    F  
Sbjct: 232 ---------------------------------------------LGRNFSKPFDIKFLD 246

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRD 363
            +    Y    S+GI +MR +  ++    D KG++ P  +AP++ ++I I K       +
Sbjct: 247 ENNNLQYPFQTSWGI-SMRSIGIMVLIHGDDKGLVLPPHIAPYQCAIIPILKDEKDKVLE 305

Query: 364 ACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +K+  +L+++G      +  +   G +   +D+ G P+++ +G K +    + +K R+
Sbjct: 306 YADKVNLKLNELGIRTILFNRDDVSPGWKLNDSDMKGIPIKIQIGKKELESDSIFVKTRI 365

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +     ++  + I+    +    +
Sbjct: 366 SNEASSIAFSD-ISKIKDKLEEIQ 388


>gi|325570709|ref|ZP_08146435.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156555|gb|EGC68735.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 477

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 72/454 (15%), Positives = 156/454 (34%), Gaps = 82/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++++  +Q+    AE+ ++  +          KG   + P G +  +++         
Sbjct: 7   FTEWYIQTIQK----AELMAYSPV----------KGSIIFRPDGFELWEHIQEEFNRFLK 52

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
           + G      P L   + +  E+   + +  E+  + +      ++ +   PT E ++   
Sbjct: 53  KEGIRNAYFPMLIPQNFFMKEADHIEGFAPELPWVTEVGNEKLEEPLALRPTSETMIGSA 112

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP+   Q    FR E +       +  FL    + +              
Sbjct: 113 FSDWINSYRDLPYEINQWANVFRWEKK-------TLPFLRTSEFLWQ------------- 152

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E     +  E     +   +D        
Sbjct: 153 -------------------------------EGHTAHENEEDARQRTMKILDEYARLCEE 181

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                +             A  +      + D          + ++ G   Y GTK++  
Sbjct: 182 FLAIPVYRGQKTPSERFAGAVDTYSIEAMMKDG---------KAVQAGTSHYMGTKFAEA 232

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-- 355
              T+   + K  +    S+G+ + R++ A+I +  D  G+++P ++AP ++ L+ +   
Sbjct: 233 FDITYLTKENKHVHAHTTSWGV-STRLLGALIMTHGDENGLVFPPTIAPTQVVLLPVGPW 291

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +  E++YA     G  V  DD     G +F   +L G  L++  G + +   K
Sbjct: 292 KKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGYKFNEWELKGACLRIECGPRDLEAGK 351

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V +K R    ++ ++LE++  +         P L
Sbjct: 352 VMVKVRDLADKQTVALEDLEAFVDQELQAMTPRL 385


>gi|308463013|ref|XP_003093785.1| CRE-PARS-1 protein [Caenorhabditis remanei]
 gi|308249391|gb|EFO93343.1| CRE-PARS-1 protein [Caenorhabditis remanei]
          Length = 570

 Score =  225 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 68/433 (15%), Positives = 146/433 (33%), Gaps = 71/433 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  MI  +   G Y   P      +++         + G      P  + +A L  
Sbjct: 94  EVITKAEMIEYYDVSGCYVLRPWSFAVWESIQEWFDSRIKKLGVKNCYFPMFVSNAALER 153

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +         + +   PT E VM   ++  ++S+R+LP    Q   
Sbjct: 154 EKTHIADFAPEVAWVTRAGNSEMAEPVAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCN 213

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++          +Y     +   +F  L L    +  
Sbjct: 214 VVRWEFKHPTPFLRTREFLWQEGHT----------AYANAADAEKEVFQILDL-YAGVYN 262

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +   I                             +    ++ +     +           
Sbjct: 263 DLLAI---------------------------PVVKGRKSEKEKFAGGDFTTTVEAYVAC 295

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMG 315
                                 RGI+     + G  +S     +++    +G+  Y    
Sbjct: 296 NG--------------------RGIQGATSHHLGQNFSKMFEISYEDPSREGERAYAWQN 335

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARL 372
           S+G+ + R + A+I    D KG++ P  VA  ++ ++ +    ++     DA +K+   L
Sbjct: 336 SWGL-STRSIGAMIMVHGDDKGLVLPPRVAAVQVIVVPVGFKTSNKDSLFDAVDKVTKDL 394

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G     D       G +F   +L G P++  VG   ++  +V    R  G ++ +S+
Sbjct: 395 VAGGVKAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKKQVTAVIRHNGEKQQVSM 454

Query: 432 EEVINYASHRFSN 444
           + ++        +
Sbjct: 455 DGIVASVKTLLDD 467


>gi|269114879|ref|YP_003302642.1| threonyl-tRNA synthetase (threonine-tRNAligase, thrRS) [Mycoplasma
           hominis]
 gi|268322504|emb|CAX37239.1| Threonyl-tRNA synthetase (Threonine-tRNAligase, ThrRS) [Mycoplasma
           hominis ATCC 23114]
          Length = 579

 Score =  225 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 153/445 (34%), Gaps = 39/445 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL+E   RD       L L T       +G   WL  G K  + +   + +   + G
Sbjct: 169 YLDILRERKERDHRKIGRDLNLFT-FNQLGGQGFPFWLEDGMKIHNAIRDYVLKLDKKFG 227

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG +  Y   M      +++ ++  P        +F S  +SY
Sbjct: 228 FREVLTPHFGEKKLYEISGHWAHYQDTMFAPIKMDNETLVARPMTCPHHIILFNSTRRSY 287

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  + +    +R E      G+ R R   + + + F + P+  +  +  ++   L+ 
Sbjct: 288 KDLPIRYSEQSRLYRYEASGALSGLERVRGMDLTEGHIF-VRPDQIRSEFKHLYKMILQA 346

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +                   D  +TQ F   D M         D  +++ 
Sbjct: 347 LKDFNIEIDHISLSLR--------------DPQDTQKFFQNDEMWNKAE---NDLREVLG 389

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
             +I  +     AA      +         K    R I +         + LP      F
Sbjct: 390 ELNIKYKEFIGEAAFYGPKVDFQ------VKTALNRIITMST---LQLDFLLPSRFEMKF 440

Query: 303 KGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ++ +     +   G IG      A +     G   + P  ++P +I++I I       
Sbjct: 441 VDSNEQFVTPVLIHRGLIGTYERFIATLLEQTKG---VLPFWLSPRQITIIPIN---DEL 494

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +Y        +V  D   E+I  +   A +L     V++G K +  + + ++  
Sbjct: 495 NEKAQDLYNEFLDEDFNVNIDIRPERINKKIRDAQILKTKFIVVIGKKEIETNTLSVREY 554

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                +  S EE +NY      N +
Sbjct: 555 GKDDSKTYSKEEFVNYLKQLKKNLK 579


>gi|13542113|ref|NP_111801.1| threonyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|22654129|sp|Q978W0|SYT_THEVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14325544|dbj|BAB60447.1| tRNA synthetase Thr [Thermoplasma volcanium GSS1]
          Length = 660

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/453 (16%), Positives = 154/453 (33%), Gaps = 24/453 (5%)

Query: 8   LPILQENPRDAEIASHKLMLRTG----MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L    EN  +A+   H+ ++          + + G   + P GQ     +   +     +
Sbjct: 211 LRRYLENLEEAKKRDHRKIIAEMDLAVFNSEWAPGFPMYTPNGQIIRKELIKYMDYVNGK 270

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  ++  P +    +W +SG Y  Y   M      +  +    P +      IF     
Sbjct: 271 NGWTDVWTPHVFKDTIWKQSGHYAKYKPNMYLFVLPDGDSYGIKPMNCPGHIAIFARRKY 330

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    +R E      G+ R R F   D + F +  +        +     
Sbjct: 331 SYRDLPVKYSEPGTVYRYEKSGEVGGLTRPRAFTQDDGHEF-IRMDQIVGEIKTLLGMVR 389

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQVFCSKDFMDFPIPSENTDF 239
             F  +   +I M  +   I  +    +    V  D G          ++ P+   +   
Sbjct: 390 ETFTTV-FGNIEMAFDLSVIDKEHPENYLLSYVCKDCGNRVEGLRGTDIECPVCHSHNMD 448

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYFGT---KYS 295
            D  + ++  EQ      +    + E   ++     ++     + +G ++   T    + 
Sbjct: 449 PDFSTWDNATEQLRQAMDSMGITYKEYPGEAAFYGPKIDVHVKDALGRMWQLSTIQVDFF 508

Query: 296 LP--MSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +P     T+  ++GK+   V +     G+     A++     GK   W   + P +  +I
Sbjct: 509 MPINFGLTYTNSEGKEERVVIIHRAIYGSYERFMAILLEHFAGKLPTW---LTPIQTYVI 565

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +   +    +   K+   L   G     DD  + +  +  +         V+VG+K   
Sbjct: 566 PVGTANA---EYARKVNKSLLDAGIRSVVDDGPDTVSKKIKMIHDQRPSYIVVVGAKEEQ 622

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           D+ V +++R  G  +   + E +    +     
Sbjct: 623 DNTVTVRNRA-GKSKTYGMNEFLEIIKNEIEKR 654


>gi|291533207|emb|CBL06320.1| Prolyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 253

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 2/246 (0%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
             IGG       +        V  +    M   +   N +     + N   +      A 
Sbjct: 8   RAIGGVPGFMSPIGLSKDAIVVVDATVMEMHNAVCGANEEDCHYKNANPKRDFGDVIVAD 67

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              +  E          +++  GIEVG +F  G KYS  + ATF   +GK+  + MG YG
Sbjct: 68  IRLIAEEDPCPHCGAPVKMTH-GIEVGQVFKLGIKYSKALGATFLDENGKEKPLIMGCYG 126

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +AA IE  HD  GIIWP S+APF++ ++ I A D+      EK+YA +  VG D
Sbjct: 127 IGVSRTMAAAIEQFHDDNGIIWPASIAPFEVVIVPINAKDEAQMQIAEKLYADMKNVGID 186

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  ++ G +F  ADL+G+P+++ V  K +  ++VEIK R  G   ++ +++     
Sbjct: 187 VLLDDRKDRAGVKFKDADLIGYPVRITVSPKLLDANEVEIKVRRDGATSNVKVDDCAQTV 246

Query: 439 SHRFSN 444
                N
Sbjct: 247 KDMLKN 252


>gi|212550458|ref|YP_002308775.1| prolyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|259511574|sp|B6YQ92|SYP_AZOPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|212548696|dbj|BAG83364.1| prolyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 493

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 154/446 (34%), Gaps = 85/446 (19%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +    + +G     P G    + +   + E    TG +    P       L  E
Sbjct: 22  LVIKADLAENSAVRGCMVIKPYGYAIWEKIQRQLDEMFKETGHVNAYFPLFIPKSFLNRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + ++  I S
Sbjct: 82  ASHIEGFAKECAIVTHYRLKNDPIGKGIIVDSEAKLEEELIIRPTSESIIWNTYKKWIHS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E       MR+R FL    + +                     
Sbjct: 142 YRDLPILINQWANVVRWE-------MRTRLFLRTAEFLWQ-------------------- 174

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                   E      + E  +  +   +D             ++
Sbjct: 175 ------------------------EGHTAHTSKEEAIEETLKILDIYANFVEQYMAIPVT 210

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A  +      + D          + ++ G   + G  ++      F  
Sbjct: 211 KGVKTPCERFAGATDTYCIETLMQDG---------KALQAGTSHFLGQNFAKAFDVQFLN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVC 361
             GK  YV   S+G+ + R++ A+I    D  G++ P  +AP +I +I +       +  
Sbjct: 262 KKGKREYVWATSWGV-STRLMGALIMMHSDDNGLVLPPKLAPCQIVIIPVSKDRTSLEDI 320

Query: 362 RDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +    I      +  +V +D+   ++ G +FA  +L G P+++ +G++ + +  +E+  
Sbjct: 321 NEKATNIINDFKNLDINVKYDNTDNKKPGWKFAEYELKGIPIRLTLGTRDLENGTIEVSR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R T  +E +S+  + +YA++  ++ +
Sbjct: 381 RDTLTKETISINNITDYANNLLNDIQ 406


>gi|302865324|ref|YP_003833961.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302568183|gb|ADL44385.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 404

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 140/436 (32%), Gaps = 43/436 (9%)

Query: 21  ASHKLMLR--TGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R     +       G+  WLP G  A   V   +RE + R G   +  P L  
Sbjct: 2   IDHRRLGRDLELFVSDPLAGAGLPIWLPAGAAARHAVEEYVRELERRAGYQHVYSPPLGK 61

Query: 77  ADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            +L+  SG    +  +M        D   +  P        +FR+  +SYR LP    ++
Sbjct: 62  RELFELSGHLGYFADDMFPPMRLSADDEFVLRPALCPHHALVFRARGRSYRELPLRVAEL 121

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E      G+ R R   + DA++F    E       ++          LG++   
Sbjct: 122 GGMYRAERSGVLGGLSRVRAISLNDAHNFCA-LEQVGDEVREILRLIGEAHAALGVRPAG 180

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +R                    G  Q +   D              D       V +   
Sbjct: 181 LRLSLR----------------GPDQRYVGDDAGWARAEELLRAALD----GVDVVEAPG 220

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A      + ++ D+      +S   ++                 ++  +DG+     M
Sbjct: 221 EAAFYGPKIDIQIVDAAGRESTISTVQLDFDKPER--------FDLSYTDSDGRRKRPVM 272

Query: 315 -GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                +G+M  + A +   H+G    W    AP ++ L+ +   D    DA   +  R  
Sbjct: 273 VHRSLVGSMERLFAYLIEVHEGAFPAW---YAPVQLLLLPV---DAAQVDAAVGLARRAE 326

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D  G  +G++   A     P   ++G +  +D  V ++ R   +   M   E
Sbjct: 327 AAGLRAEVDHAG-SLGARIRDASRRRVPYTGVLGPREAADGSVSLRLRDGRVLAPMPAAE 385

Query: 434 VINYASHRFSNNRPVL 449
            +       ++    L
Sbjct: 386 ALGLIGAVVASRSAAL 401


>gi|257867921|ref|ZP_05647574.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257874250|ref|ZP_05653903.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257802004|gb|EEV30907.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257808414|gb|EEV37236.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 477

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/454 (16%), Positives = 156/454 (34%), Gaps = 82/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++++  +Q+    AE+ ++  +          KG   + P G +  +++         
Sbjct: 7   FTEWYIQTIQK----AELMAYSPV----------KGSIIFRPDGFELWEHIQEEFNRFLK 52

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
           + G      P L   + +  E+   + +  E+  + +      ++ +   PT E ++   
Sbjct: 53  KEGIRNAYFPMLIPQNFFMKEADHIEGFAPELPWVTEVGNEKLEEPLALRPTSETMIGSA 112

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP+   Q    FR E +       +  FL    + +              
Sbjct: 113 FSDWINSYRDLPYEINQWANVFRWEKK-------TLPFLRTSEFLWQ------------- 152

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E     +  E     +   +D        
Sbjct: 153 -------------------------------EGHTAHENEEDARQRTMKVLDEYARLCEE 181

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                +             A  +      + D          + ++ G   Y GTK++  
Sbjct: 182 FLAIPVYRGQKTPSERFAGAVDTYSIEAMMKDG---------KAVQAGTSHYMGTKFAEA 232

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-- 355
              T+   + K  Y    S+G+ + R++ A+I +  D  G+++P ++AP ++ L+ +   
Sbjct: 233 FDITYLTKENKHTYAHTTSWGV-STRLLGALIMTHGDENGLVFPPTIAPTQVVLLPVGPW 291

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +  E++YA     G  V  DD     G +F   +L G  L++  G + +   K
Sbjct: 292 KKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGYKFNEWELKGACLRIECGPRDLEAGK 351

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V +K R    ++ ++LEE+  +         P L
Sbjct: 352 VMVKVRDLPDKQTVALEELEAFVDQELQAMTPRL 385


>gi|320162939|gb|EFW39838.1| prolyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 788

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 90/232 (38%), Positives = 130/232 (56%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  F P+      DA+  SH+ +   G++ QH+ GIY+  P+G +AL+NV  II EE  
Sbjct: 125 VSTLFAPLFAPLGADAKTLSHRYLTYAGLMVQHAAGIYALTPVGLRALENVTRIICEELE 184

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA   ++P L + +LW ++GR+ S G+E+ RL DR  + M+ GPTHEE + ++  +  
Sbjct: 185 LVGAQRTALPMLMTKELWDKTGRWTSSGQEVFRLQDRKGRDMLLGPTHEEAVCELAATKP 244

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
                 P   YQ+  KFRDE RPR G+MR REF MKD Y+FD+  E +  +Y+ +   Y 
Sbjct: 245 LGRGQFPLMLYQLDRKFRDEARPRHGLMRGREFWMKDLYTFDVDIEHAAKTYDTICGVYG 304

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           RIF RLGL  +   A++G IGG  SHEF V++  GE  +             
Sbjct: 305 RIFDRLGLDYVRAEADTGNIGGVRSHEFHVISPAGEDTLLVCSSCNHAMNEE 356



 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 69/202 (34%), Gaps = 50/202 (24%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                    D+    L D       V+  G+EVGH F  G KYS P+  TF  A  K   
Sbjct: 518 CDISEVEAGDLCRTCLTDHGRMAPLVTKLGMEVGHAFLLGQKYSQPLGVTFTNAANKRVT 577

Query: 312 VQMGSYGIGAMRVVAAVIES--SHDGKGI------------------------------- 338
            +MG YG+G  R++AA++E+   +    I                               
Sbjct: 578 TEMGCYGLGVSRILAALVETQLHNAQTTIAQSPAASTTAPAGAAAAATPKHQQQTDLLTL 637

Query: 339 -IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCD--------VFWDDMGEQI 388
             WP  VAPF +             RD  +K+   L              +  DD    +
Sbjct: 638 VRWPIEVAPFAVCFSFGGLGLSDETRDKWQKVALALHDTIVRQGILPVNAMLIDDR---L 694

Query: 389 GSQFAV----ADLLGFPLQVIV 406
           G+        +D+LG P+ + +
Sbjct: 695 GASAREQARVSDVLGVPINITI 716


>gi|257876814|ref|ZP_05656467.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257810980|gb|EEV39800.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 477

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/454 (16%), Positives = 156/454 (34%), Gaps = 82/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++++  +Q+    AE+ ++  +          KG   + P G +  +++         
Sbjct: 7   FTEWYIQTIQK----AELMAYSPV----------KGSIIFRPDGFELWEHIQEEFNRFLK 52

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
           + G      P L   + +  E+   + +  E+  + +      ++ +   PT E ++   
Sbjct: 53  KEGIRNAYFPMLIPQNFFMKEADHIEGFAPELPWVTEVGNEKLEEPLALRPTSETMIGSA 112

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP+   Q    FR E +       +  FL    + +              
Sbjct: 113 FSDWINSYRDLPYEINQWANVFRWEKK-------TLPFLRTSEFLWQ------------- 152

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E     +  E     +   +D        
Sbjct: 153 -------------------------------EGHTAHENEEDARQRTMKVLDEYARLCEE 181

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                +             A  +      + D          + ++ G   Y GTK++  
Sbjct: 182 FLAIPVYRGQKTPSERFAGAVDTYSIEAMMKDG---------KAVQAGTSHYMGTKFAEA 232

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-- 355
              T+   + K  +    S+G+ + R++ A+I +  D  G+++P ++AP ++ L+ +   
Sbjct: 233 FDITYLTKENKHTHAHTTSWGV-STRLLGALIMTHGDENGLVFPPTIAPTQVVLLPVGPW 291

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +  E++YA     G  V  DD     G +F   +L G  L++  G + +   K
Sbjct: 292 KKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGYKFNEWELKGACLRIECGPRDLEAGK 351

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V +K R    ++ ++LEE+  +         P L
Sbjct: 352 VMVKVRDLADKQTVALEELEAFVDQELQAMTPRL 385


>gi|268576408|ref|XP_002643184.1| C. briggsae CBR-PRS-1 protein [Caenorhabditis briggsae]
 gi|187040442|emb|CAP20827.1| CBR-PARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 579

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 143/433 (33%), Gaps = 71/433 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  MI  +   G Y   P      + + A       + G      P  + +A L  
Sbjct: 103 EVITKAEMIEYYDVSGCYVLRPWSFAVWEAIQAWFDSGIKKLGVKNCYFPMFVSNAALER 162

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +         + +   PT E VM   ++  ++S+R+LP    Q   
Sbjct: 163 EKTHIADFAPEVAWVTRAGQSEMAEPIAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCN 222

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++    P  ++            +F  L L    +  
Sbjct: 223 VVRWEFKHPTPFLRTREFLWQEGHTAFANPSDAEK----------EVFQILDL-YAGVYN 271

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +   I                             +    ++ +     +           
Sbjct: 272 DLLAI---------------------------PVVKGRKSEKEKFAGGDFTTTVEAYVAC 304

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMG 315
                                 RGI+     + G  +S     +++    +G+  +    
Sbjct: 305 NG--------------------RGIQGATSHHLGQNFSKMFDISYEDPAKEGERAFAWQN 344

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARL 372
           S+G+ + R + A++    D KG+I P  VA  ++ ++ +       +   DA +K+   L
Sbjct: 345 SWGL-STRTIGAMVMIHGDDKGLILPPRVAAVQVIVVPVGFKTENKEWLFDAVDKVTKDL 403

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G     D       G +F   +L G P++  VG   ++ ++V    R  G +  MSL
Sbjct: 404 VAGGIKAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQVTAVIRHNGEKRQMSL 463

Query: 432 EEVINYASHRFSN 444
           + +          
Sbjct: 464 DGLSEAVKTLLDE 476


>gi|301613124|ref|XP_002936063.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase isoform 1 [Xenopus
            (Silurana) tropicalis]
          Length = 1708

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 144/450 (32%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 1213 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 1272

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1273 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1332

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E           +   +
Sbjct: 1333 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATYE----------EAAEEV 1382

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  +   I                             +    T+ +    
Sbjct: 1383 LQILDL-YARVYEDLLAI---------------------------PVVKGRKTEKEKFAG 1414

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S+R I+     + G  +S      F+ 
Sbjct: 1415 GDYTTTVEAFISA--------------------SSRAIQGATSHHLGQNFSKMFEIVFED 1454

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G   Y    S+G+ + R + A+     D  G++ P  VA  ++ +I         +
Sbjct: 1455 PKTPGLKQYAYQNSWGL-STRTIGAMTMVHADNIGMVLPPRVACVQVIIIPCGITNTLSE 1513

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +DA    C++   RL  V      D       G +F   +L G P+++ VG + + + 
Sbjct: 1514 EDKDALLKKCDQYLKRLLNVDVRARADVRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNK 1573

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R  G ++ +S ++           
Sbjct: 1574 QFVAVRRDNGEKQTISEDQAETRLKEILEE 1603


>gi|48478436|ref|YP_024142.1| prolyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|74579482|sp|Q6KZA3|SYP_PICTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|48431084|gb|AAT43949.1| prolyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 466

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 152/420 (36%), Gaps = 69/420 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGK 91
               KG+  WLP G K +  ++ IIR+  +     E+S P L +   L  E      +  
Sbjct: 25  RYAIKGMNVWLPYGLKIMRLIDNIIRDNVDNKSFQEVSFPVLITRSQLETEFEHIKGFEN 84

Query: 92  EMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +     ++ D  +   PT E  M  +F   I+S+++LP   YQI   +R E +   
Sbjct: 85  EIYWVTKGGSEKLDIELALRPTSESAMYTMFPLWIRSHQDLPLKIYQIVSVYRYETKHTR 144

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             +R RE                                    ++     + G     +S
Sbjct: 145 SFIRVREIHF--------------------------------FEAHTAHVDYGDAERQMS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               + +   E                             +   +        D      
Sbjct: 173 EYMDIWSSIAEK----------------------------LCLPYNIDMRPDWDKFPGAK 204

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +    +    S R +++G I  +G  ++      +   +G   YV   ++G+ + R++AA
Sbjct: 205 YTLAFDTLMPSGRSLQIGTIHEYGENFARNYDIKYLDINGDLKYVSQTTFGL-SERLLAA 263

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-G 385
           VI    D  G+I P S+AP +  +I I     +   D   KI + L  +      D    
Sbjct: 264 VIGIHGDDTGLILPASIAPVQAIIIPIPGKSFKEVLDYSGKILSMLKDINVRAEIDSREN 323

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              G ++   ++ G PL++ +GS+ +  S V +  RL   R ++S++E IN   +  + +
Sbjct: 324 YTPGYKYNDWEMRGVPLRIEIGSREMESSTVTVVSRLNKKRLNISIKE-INNIKNMLNEH 382


>gi|327262446|ref|XP_003216035.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like isoform 1
            [Anolis carolinensis]
          Length = 1524

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 140/450 (31%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      + +      E  + G    
Sbjct: 1029 EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAFAVWEAIKDFFDSEIKKLGVENC 1088

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1089 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1148

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E           +   +
Sbjct: 1149 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATYE----------EAAEEV 1198

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L +                                +      +    T+ +    
Sbjct: 1199 LQILDLYAR----------------------------VYEELLAIPVVKGRKTEKEKFAG 1230

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1231 GDYTTTVEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1270

Query: 305  A--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  Y    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1271 PRTPGEKQYAYQNSWGLT-TRTIGVMTMIHGDNMGLVLPPRVACVQVVIIPCGITNTLSE 1329

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A  +     C +   RL         D       G +F   +L G P+++ VG + +  +
Sbjct: 1330 ADKEALMTKCSEYRKRLLSANIRSRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSN 1389

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +   +  E ++   H    
Sbjct: 1390 QFVAVRRDTGEKMTFAENEAVDQLRHILEE 1419


>gi|193216459|ref|YP_001999701.1| prolyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193001782|gb|ACF06997.1| prolyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 476

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 156/425 (36%), Gaps = 68/425 (16%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M +  SKG   + PL     DN+  I  E+        + +P L    L   E    + +
Sbjct: 28  MAYGSSKGAIIFKPLSFGIWDNIRKIADEKFKEKDVANVYLPLLIPEGLLQKEKDHLEGF 87

Query: 90  GKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
             E+  + +       +     PT E +  D FR+ I+S+ +LP  + Q     R E + 
Sbjct: 88  NPELATVTEVGGKKLAEKFFIRPTSEVLFADFFRNEIESHNDLPLIYNQWVNVLRWE-KT 146

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
               +R+REFL ++ ++       +     +M   Y+ +       +IP+ A     G  
Sbjct: 147 TNPFLRTREFLWQEGHTMHANSAEAIKLTYEMLNVYIDLVQ--NYLAIPVIA-----GNK 199

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             HE    AD                                                  
Sbjct: 200 TEHEKFSGAD-------------------------------------------------- 209

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             F    E      + ++ G   Y    ++      FK  + +  +    S+GI + R++
Sbjct: 210 --FTLTIEAMMKDGKALQSGTSHYLAQNFTKAFEIAFKNKNNEQEFAYGTSWGI-STRLL 266

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            A+I +  D +GII P  +AP +I +I I    D    +   +I  +L+KV   V  DD 
Sbjct: 267 GALIMTHGDDRGIIIPPKIAPVQIDIIEILAKKDPKVHEVALEITKKLNKV-FAVKLDDS 325

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  G + A +++ G PL++ VG   + +++V    R    +  + L+++   A     +
Sbjct: 326 DKSPGFKAANSEIHGTPLRIEVGPNDLINNQVTFVRRDKIEKISVPLDKIEARAKEILDS 385

Query: 445 NRPVL 449
            +  L
Sbjct: 386 IQSNL 390


>gi|296230065|ref|XP_002760549.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Callithrix
            jacchus]
          Length = 1540

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 139/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  H   G Y   P      + +      E  + G    
Sbjct: 1045 EAKKEENLADWYSQVITKAEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1104

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1105 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1164

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S          ++  +  +   +
Sbjct: 1165 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHS----------AFATIEEAAEEV 1214

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                       A   E  +          +    T+ +    
Sbjct: 1215 LQILDL----------------------YAQIYEELLAI------PVVKGRKTEKEKFAG 1246

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1247 GDYTTTVEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIMFED 1286

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1287 PKTPGEKQFAYQNSWGLT-TRTIGVMTMIHGDNMGLVLPPRVACVQVVVIPCGITNALSE 1345

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL  V   V  D       G +F   +L G P+++ VG + + + 
Sbjct: 1346 EDKEALMAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNC 1405

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +  +S  E          +
Sbjct: 1406 QFVAVRRDTGEKLTVSENEAETKLQAILED 1435


>gi|149182619|ref|ZP_01861089.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849697|gb|EDL63877.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 476

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 153/453 (33%), Gaps = 79/453 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +    AE+  +  +  + +I           P G    +N+   + +   
Sbjct: 12  MDEDFAQWYTDVVTKAELIDYSSVRGSMIIR----------PYGYALWENIKEELDKRIK 61

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +    D+ +       PT E +  + 
Sbjct: 62  ETGHENVYMPLFIPESLLQREKDHIEGFAPEVAWVTHGGDEELQERLCVRPTSEVLFGEH 121

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +++ I SYR+LP  + Q     R E +     +R+                         
Sbjct: 122 YKNIIHSYRDLPKLYNQWANVVRWE-KTTRPFLRT------------------------- 155

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                       L+ +     +     + +HE  V       +V+         IP    
Sbjct: 156 ------------LEFLWQEGHTCHETDEEAHEETVKM----LEVYAELCENILAIPVIKG 199

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +          +T                    +     + ++ G   + G  ++  
Sbjct: 200 QKTEKEKFAGAKYTYTIE------------------SLMHDGKALQSGTSHHLGDGFAKA 241

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F   +G   YVQ  S+G    R++ A+I    D +G++ P   AP ++ ++ I  H
Sbjct: 242 FGIQFSDREGNLQYVQQTSWGFT-TRIIGAMIMVHGDDRGLVIPPKAAPTQLMIVPIAQH 300

Query: 358 DQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   D    +  RL   G   V  D   ++ G +F   ++ G PL++  G + + +++V
Sbjct: 301 KEGVLDFAYNLKERL--AGSFRVGIDASDKKPGWKFNEYEMKGIPLRLEAGPRDIENNQV 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            I  R TG +  + L+E+ N  +    + +  L
Sbjct: 359 VIARRDTGDKVTVGLDELENRVAQLLDDVQNNL 391


>gi|159036441|ref|YP_001535694.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157915276|gb|ABV96703.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 405

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 136/436 (31%), Gaps = 43/436 (9%)

Query: 21  ASHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R  G+         G+  WLP G  A   V   IRE + + G   +  P L  
Sbjct: 2   IDHRRLGRELGLFTSDPLAGAGLPLWLPAGAAARHAVEEYIRELERQAGHQHVLTPPLGK 61

Query: 77  ADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            +L+  SG  D +  +M        D   +  P        ++RS  +S R+LP    ++
Sbjct: 62  RELFELSGHLDFFADDMFPPMRLSADDEFVLRPALCPHHALVYRSRGRSRRDLPLRIAEL 121

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E      G+ R R   + DA++F  T +       ++          LG++   
Sbjct: 122 GGMYRAERSGVLGGLARVRAISLNDAHNF-CTLDQVGAEVAEILRLIREAHAALGVRPAG 180

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R                    G  + +   +              D         +   
Sbjct: 181 YRLSLR----------------GPGERYVGDEADWERAEELLRAALD----GVEYTEGVG 220

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQ 313
             A      + ++ DS      +S   ++                 ++  + G +   V 
Sbjct: 221 EAAFYGPKIDIQVVDSAGRESTLSTVQLDFDKPER--------FDLSYVDSGGARRRPVM 272

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+M  +   +   H+G    W    AP ++ ++ I A       A E   A   
Sbjct: 273 VHRSLVGSMERLFGYLIEVHEGTFPAW---YAPVQLVVLPIAAGQDS---AAETFAAAGQ 326

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G           +G +   A     P   +VG +  +  +V ++ R       +   E
Sbjct: 327 AAGLRAEV-HRNGSLGGRIREAARARIPYAAVVGPREAAVGQVSLRLRDGRSLAPLPAAE 385

Query: 434 VINYASHRFSNNRPVL 449
            I   +   +   P L
Sbjct: 386 AIALVARVVATRSPEL 401


>gi|72080917|ref|YP_287975.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
 gi|71914041|gb|AAZ53952.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 579

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 156/441 (35%), Gaps = 35/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      KL L T        G   WL  G +  + +   I E     G
Sbjct: 170 FLGILQERQERDHRKIGAKLKLFT-FSSYFGLGFPVWLENGMRIYNKIRQKILEFDRNYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P     +L+  SG    Y  +M +     ++ +I  P        +F   + SY
Sbjct: 229 FREVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIPRPMTCPHHIILFSQQLFSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           RNLP+   +    +R E      G+ R R   + + + F ++        + +F     +
Sbjct: 289 RNLPYRISEQSRLYRYEKSGALLGLERVRAMDLTEGHIF-VSKSQIFSEISHLFQMISEV 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +                   D      F   D M     ++   F D   
Sbjct: 348 LDFFKVQIFYISFSKR--------------DPKNKDKFFQDDQMWEQAEADLKQFLDQNK 393

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +N I +   A  A      + ++  +L +   +S   ++    F    K+      +F  
Sbjct: 394 INYIEKIGEA--AFYGPKIDFQVKTALNKELTISTLQLD----FLLPEKF----KISFIN 443

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              K     +   G IG      A++     G    W   ++P +I +I +    +   D
Sbjct: 444 EHNKKETPILIHRGLIGTYERFIALLLEQSKGNLPFW---ISPKQIIVIPVA---EKHND 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +KI+  L  +G +   D   E+I  +   A+L     QVI+G + ++ +++  +   +
Sbjct: 498 FAQKIHKILFDLGFNSEIDLRSERISRKIREANLEKINFQVIIGDEEIAKNEITYRKFGS 557

Query: 424 GIREDMSLEEVINYASHRFSN 444
                +SL + ++   +   N
Sbjct: 558 PELFRISLVDFVDLLKNSEKN 578


>gi|296422769|ref|XP_002840931.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637158|emb|CAZ85122.1| unnamed protein product [Tuber melanosporum]
          Length = 459

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 146/444 (32%), Gaps = 59/444 (13%)

Query: 21  ASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
             H+L+       + H  S G   +LP G +  + + + IR +    G  E+  PT+   
Sbjct: 55  PDHRLLAAAQDLLITHPVSPGSPLFLPHGSRIFNKLISFIRSQYTLYGYEEVITPTIYKK 114

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS--HIKSYRNLPFTFYQI 135
            LW  SG +++Y + M ++     +     P +      +F+      S R+LP  +   
Sbjct: 115 SLWETSGHWENYNEHMFKV--EAGEEFGLKPMNCPGHCLLFKHAAGKLSLRDLPVRYADF 172

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R+E      G+ R R F   DA+ F   P       +        ++    L    
Sbjct: 173 SPLHRNENSGSLSGLTRVRRFHQDDAHIF-CRPSQISQEISSTLRFIQTVYKVFHLPPYK 231

Query: 195 MRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
           +R  + P  G   S E    A+                   +                  
Sbjct: 232 LRLSTRPKEGYMGSLEEWDRAEAALKASLDKSGQDWAINEGDG----------------- 274

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
              A      +  L DS  +  + +   ++       G  Y  P  A        +    
Sbjct: 275 ---AFYGPKIDTILTDSDGKEHQTATIQLDFQLPRRLGLNYFAPAPAA-------EQKGI 324

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           + +         +  +   ++GK   WP  ++P +  +I +   D++   A       +S
Sbjct: 325 LSTDPEQLKE--SGFVTPHYNGK---WPFWLSPRQAIVIPVAMTDEIVAYA-----RAMS 374

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI-----KHRLTGIRE- 427
           +   +V  D+ G  +  +   A +  +   ++VG K +    V +     +H+  G  E 
Sbjct: 375 RRTFNVDIDESGGLLSRKVRAARIKHYNYIIVVGEKNLQAKTVSLGSASPRHQEQGHEEG 434

Query: 428 ------DMSLEEVINYASHRFSNN 445
                 DMS+EEV        +  
Sbjct: 435 VEKGLKDMSVEEVYQKFVELENEY 458


>gi|145230415|ref|XP_001389516.1| threonyl-tRNA synthetase [Aspergillus niger CBS 513.88]
 gi|134055633|emb|CAK37279.1| unnamed protein product [Aspergillus niger]
          Length = 526

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 140/422 (33%), Gaps = 65/422 (15%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ +   +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 77  YSPGSPLFLPNGTHIINKLITFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 136

Query: 95  RLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 137 EVRGRGATGDTDGEAGEDESYGLKPMNCPGHCLLFKSQTHSYRELPIRYADFSPLHRNEV 196

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R F   D + F   P+  K            +    GL    +   + P 
Sbjct: 197 SGSLSGLTRVRRFHQDDGHIF-CRPQQIKGEIASALGFVDLVMTTFGLGPYRLVLSTRPE 255

Query: 203 GG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                S E    A+    +   +          +                     A    
Sbjct: 256 KDFIGSLELWNSAEAQLREALDNTGREWAMNEGDG--------------------AFYGP 295

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGI 319
             + +L D   +  ++S   +++     FG +Y +         +  GK   V +     
Sbjct: 296 KIDIQLQDKAGKYHQLSTIQLDMNLPQRFGLEYQVAEGEEDYNPETPGKATPVMIHRANF 355

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++    A++   + G    WP  ++P +  ++ +   D+       +  A++S  G   
Sbjct: 356 GSLERFLALLIEEYAG---RWPFWLSPRQGIVLTVNQ-DEAVVQQAHEAAAKIS--GFRA 409

Query: 380 F-----------------------WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                                    D  G+ +  +   A  + + L  I+G K V+ S++
Sbjct: 410 LQPGQMGTDAPQPISSVDSTFLIDVDSSGQSLNKKIQRAKHMKYNLIFILGPKDVAASRI 469

Query: 417 EI 418
            +
Sbjct: 470 TV 471


>gi|291564005|emb|CBL42821.1| prolyl-tRNA synthetase, family I [butyrate-producing bacterium
           SS3/4]
          Length = 477

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 138/412 (33%), Gaps = 68/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    +N+   + +   + G   + +P      L   E    + +  E+  
Sbjct: 38  KGCMVIKPDGYAIWENIQHELDKRFKKAGVKNVYMPLFIPESLLDKEKDHVEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +   + +   PT E +  D ++  I SYR+LP  + Q     R E         
Sbjct: 98  VTQGGLEPLQERLCVRPTSETLFCDFYQKDIHSYRDLPKVYNQWCSVVRWEKT------- 150

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL                                                  S EF 
Sbjct: 151 TRPFLR-------------------------------------------------SREF- 160

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L   G T    +++  +  I   N         + +            +          
Sbjct: 161 -LWQEGHTAHATAEEAQERTIQMLN--LYADFCEDFLAIPVVRGQKTDKEKFAGAEATYT 217

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E+     + ++ G    FG  ++      +   D +  YV   S+G+   R++ A+I  
Sbjct: 218 IESLMHDGKALQSGTSHNFGDGFAKAFGIQYSDKDNQLKYVHQTSWGMT-TRMIGAIIMV 276

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D +G++ P +VAP ++ ++ I+   +   +   ++   LS     V  DD  +  G +
Sbjct: 277 HGDNEGLVLPPNVAPTQVVIVPIRQQQEGVLEKAREVEEVLSN--FRVKVDDSDKSPGWK 334

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F+ +++ G P++V +G K +   +  +  R T  +  ++L E+         
Sbjct: 335 FSESEMRGIPVRVELGPKDIEAGQAVLVRRDTHEKITVALSEIAEKVDELLK 386


>gi|256397192|ref|YP_003118756.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256363418|gb|ACU76915.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 480

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 144/437 (32%), Gaps = 71/437 (16%)

Query: 23  HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++++ +  ++ +  ++G     P G +  + + A +      TG      P L       
Sbjct: 20  NEVVTKAQLVERGPARGTMVIRPYGYRIWELLQADLDGRIKDTGHENAYFPMLIPESYLK 79

Query: 82  -ESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+   + +  E+  +        ++ ++  PT E V+ ++    I SYR+LP    Q  
Sbjct: 80  REAEHVEGFAPELAVVTHAGGKELEEPLVLRPTSETVIGEMMAKWISSYRDLPLLLNQWA 139

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R ELRPR        FL    +                                   
Sbjct: 140 NVVRWELRPRL-------FLRTTEF----------------------------------- 157

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                           L   G T      + M   +   +        L +I        
Sbjct: 158 ----------------LWQEGHTAHADEAEAMAETLQMLDVYEHVCRDLAAIPVVPGEKT 201

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                    K F           + ++ G   Y GT ++      F    G+       S
Sbjct: 202 PGERFAGAVKTFTVEGM--MRDGKALQSGTTHYLGTNFAKAFGIQFADDAGRLELCHTTS 259

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSK 374
           +G+ + R+V   I +  D KG++ P  +AP+++ ++ I   D  +    A  ++  RL  
Sbjct: 260 WGM-STRLVGGTIMTHGDDKGLVLPPKLAPYQVVIVPIARGDQAETVLAAVRELAGRLKA 318

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLE 432
            G  V  DD  +   G +F   ++ G PL++ +G + ++     +  RL    +  +SL+
Sbjct: 319 AGIRVHVDDRPQVSPGFKFNDWEMRGVPLRLEIGPRDLAAGTALLAKRLGDQGKVAISLD 378

Query: 433 EVINYASHRFSNNRPVL 449
                      + +  L
Sbjct: 379 TAPEVLLDTLDDFQEFL 395


>gi|218186121|gb|EEC68548.1| hypothetical protein OsI_36857 [Oryza sativa Indica Group]
          Length = 490

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 284 DGKHYFGINWERDLPLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAM 343

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 344 KATVQGEDGRNQVLTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 403

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 404 SFRVQALAEELYNTLRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDNEEIE 463

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E++++   +  
Sbjct: 464 YKNRRVGEKQMIKTGEIVDFLLGQIK 489



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/91 (58%), Positives = 69/91 (75%)

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +IQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL   
Sbjct: 52  KIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYEAYSKIFSRMGLDFR 111

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           P++A++G IGG  SHEF VLAD+GE  +  S
Sbjct: 112 PVQADTGSIGGSASHEFQVLADSGEDDIVFS 142



 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +    R+E
Sbjct: 1  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKIQTKFRDE 60

Query: 61 QNRT 64
              
Sbjct: 61 VRPR 64


>gi|313885480|ref|ZP_07819230.1| proline--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619210|gb|EFR30649.1| proline--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 479

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 147/447 (32%), Gaps = 82/447 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L  +Q+    A++  +  +           G   + P G +  +++ A   +   
Sbjct: 8   FSKWYLQTIQQ----ADLMDYSPVR----------GCMIFKPNGYELWEHIQANFDKRFK 53

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             G      P L     +  E    + +  E+  + +    + ++ +   PT E ++   
Sbjct: 54  EEGVRNAYFPMLIPESFFTKEKDHIEGFAPELPWVTEAAGEKLEERLALRPTSETMIGHA 113

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I SYR+LP    Q    FR E        R+  FL    + +              
Sbjct: 114 YSKWINSYRDLPLMLNQWANVFRWEK-------RTLPFLRTSEFLWQ------------- 153

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E      TGE +       M         
Sbjct: 154 -------------------------------EGHTAHATGE-EALDRTMRMLQVYKEVIE 181

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   +               A +    E              + ++ G   Y GTK++  
Sbjct: 182 DVLAVPVFEGEKTPSERFAGAMNTFSVEA--------MMQDGKAVQAGTSHYLGTKFAEA 233

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
               +  ++ +  +    S+G+ + R++ ++I    D +G++ P  +AP ++  I +   
Sbjct: 234 FDIKYLNSNNEHVHAFTTSWGV-STRLIGSLIMVHSDDQGLVLPPKIAPQQVVFIPVGPW 292

Query: 357 -HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +   +    L   G     DD   + G +F   +L G PL++ VG + + + +
Sbjct: 293 QKNPAIMEQINEWNQALQAKGVRTIIDDSDNRPGFKFNEWELRGAPLRIEVGPRDLENKQ 352

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
             +K R    +E ++ ++V++      
Sbjct: 353 AILKARDLSEKETVAADQVVDRVLAEL 379


>gi|121700783|ref|XP_001268656.1| threonyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119396799|gb|EAW07230.1| threonyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 532

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 141/422 (33%), Gaps = 65/422 (15%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 83  YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYKRSLWEVSGHWQNYKDDMY 142

Query: 95  RLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            D++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 143 EVRGRGATGEADGEAGEDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEV 202

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R F   D + F   P+  K            +    GL    +   + P 
Sbjct: 203 SGSLSGLTRVRRFHQDDGHIF-CRPQQIKGEIASALGFVDMVMTTFGLGPYRLVLSTRPE 261

Query: 203 GG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                S E    A+    +   +          +                     A    
Sbjct: 262 KDFIGSLELWDSAEAQLREALDNSGREWAMNEGDG--------------------AFYGP 301

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGI 319
             + +L D   +  ++S   +++     FG +Y +            G+   V +     
Sbjct: 302 KIDIQLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEGEEDYDPATPGRATPVLVHRANF 361

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD- 378
           G++    A++   + G    WP  ++P +  ++ +   D+       +  A+LS  G   
Sbjct: 362 GSLERFLALLIEQYGG---RWPFWLSPRQGIILTVNQ-DEAVLTQAHEAAAQLS--GFRP 415

Query: 379 ----------------------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                                 +  D   + +G +   A  + + L  I+G K V+DS +
Sbjct: 416 LVAGQNDAKTPRPLSSVDSTFLIDVDTSSQTLGKKIQRAKQMKYNLIFILGPKDVADSSI 475

Query: 417 EI 418
            +
Sbjct: 476 TV 477


>gi|189217812|ref|NP_001121346.1| glutamyl-prolyl-tRNA synthetase [Xenopus laevis]
 gi|171846443|gb|AAI61719.1| LOC100158438 protein [Xenopus laevis]
          Length = 1499

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 142/450 (31%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 1004 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 1063

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1064 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1123

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E           +   +
Sbjct: 1124 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATYE----------EAAEEV 1173

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L +                                +      +    T+ +    
Sbjct: 1174 LQILDLYAR----------------------------VYEELLAIPVVKGRKTEKEKFAG 1205

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S+R I+     + G  +S      F+ 
Sbjct: 1206 GDYTTTVEAFISA--------------------SSRAIQGATSHHLGQNFSKMFEIVFED 1245

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                G   Y    S+G+ + R + A++    D  G++ P  VA  +I +I     + +  
Sbjct: 1246 PKTPGLKQYAYQNSWGL-STRTIGAMVMVHADNTGMVLPPRVACVQIIIIPCGITNTLAE 1304

Query: 363  D-------ACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +        C++   RL  V      D       G +F   +L G P+++ VG + + + 
Sbjct: 1305 EDKDALLKKCDQYLKRLLNVDVRARADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNK 1364

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R  G ++ +  ++           
Sbjct: 1365 QFVAVRRDNGEKQTIPEDQAETRLKEILEE 1394


>gi|159900080|ref|YP_001546327.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|226701298|sp|A9B562|SYP_HERA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159893119|gb|ABX06199.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 566

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/231 (37%), Positives = 131/231 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AE+A+H+L+LR G+  Q   G  + LPLG +    + AI+  E
Sbjct: 1   MRMSSGFGRTLREAPSEAELAAHQLILRAGLARQLLAGGMALLPLGMRVFRRIEAIMHAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E   P + +A LW ++GRY  YG+ MLR  +RN +A+++ PTHEE + ++ R 
Sbjct: 61  LAAIGAGEFRTPVVHAASLWEQTGRYAQYGEAMLRFNNRNQQALLFAPTHEEAVAELARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQI  K+RDELR R G++R REF M DAYS D    G    Y+++ ++
Sbjct: 121 EVDSYRQLPSLLYQIHTKYRDELRVRGGLLRLREFTMLDAYSLDTDWAGLDMVYDRVALA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +  IF R G++   + A+ G +GG    E++  + +GE  +          
Sbjct: 181 FETIFERCGVRFTAVEADGGEMGGREPREYMAFSSSGEDSLVVCPLCSYAA 231



 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 113/200 (56%), Gaps = 3/200 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
             L ++V          +D+ N +  D+ P         RGIE+GHIF  GT+Y+  + A
Sbjct: 363 YHLQNVVYGRDWQATVVADIANVEEGDACPVCGAALSLERGIEIGHIFKLGTRYTEALGA 422

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+    G+   + MGSYGIG  R++  +IE  HD KGI+WP SVAPF + L+ + A    
Sbjct: 423 TYLDPQGQAQPIVMGSYGIGLERLLQVIIEQHHDEKGIVWPASVAPFDLHLVQLGA-SAT 481

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A  ++Y +LS+ G  V +DD  E  G +F  ADLLG PL++ VG + +  + VE++ 
Sbjct: 482 VSEAANQLYQQLSEAGLSVLYDDRNESAGVKFNDADLLGMPLRLTVGERGLKQNVVELRQ 541

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG+ E ++L++V+    +
Sbjct: 542 RATGVVETIALDQVVKSIKN 561


>gi|240047776|ref|YP_002961164.1| threonyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239985348|emb|CAT05361.1| Threonyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 578

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 143/440 (32%), Gaps = 39/440 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL +L+E   RD      +L + T        G   WL  G K  + +   I     R G
Sbjct: 171 FLALLEERKERDHRKIGKELKIFT-FTKWFGLGFPVWLENGMKIHNKIKDKILAFDKRYG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG    Y  +M          +I  P        +F     SY
Sbjct: 230 FREVLTPHFGEKHLYETSGHLAHYRDDMFEPIKAESDYLIPRPMTCPHHIVLFDKAQCSY 289

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP+   +    +R E      G+ R R   + + + F ++ +        +F     +
Sbjct: 290 RQLPYRISEQSRLYRFEKSGALTGLERVRSMDLTEGHIF-VSRKQIFDECKHLFTMIEEV 348

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                +K   +                   D  +   F   + M     ++   F D  +
Sbjct: 349 LDFFEIKIDYISFSRR--------------DPEDKSKFYDDEQMWNDAENDLKKFLDSHN 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
           +  + +   A +                + K    + I    I      + LP   +  F
Sbjct: 395 VKYVEKIGEAAFYGPKIDF---------QIKTALNKEI---TISTLQLDFLLPKKFNIYF 442

Query: 303 KGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +     +   G IG      +++     G   + P  ++P ++S+I I       
Sbjct: 443 NNENNEKETPVLIHRGLIGTYERFISILLEQTKG---VLPFWLSPKQVSVIPILPK---H 496

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E + + L+K   +V  D   E+I  +   A +     Q+I+G   V + K+  +  
Sbjct: 497 DDYAEFVRSELAKNNFEVEVDTRDERITKKIREAQIQKVKYQLIIGDSEVENQKITYREY 556

Query: 422 LTGIREDMSLEEVINYASHR 441
                   SL+E I   + +
Sbjct: 557 GKQESTTTSLDEFIKLLNSQ 576


>gi|170578851|ref|XP_001894567.1| Bifunctional aminoacyl-tRNA synthetase  [Brugia malayi]
 gi|158598757|gb|EDP36588.1| Bifunctional aminoacyl-tRNA synthetase , putative [Brugia malayi]
          Length = 544

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 150/436 (34%), Gaps = 74/436 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  MI  +   G Y   P      + +     E+  + G      P   S   L  
Sbjct: 65  QVITKAEMIEYYDISGCYVLRPWSYAIWEFIQEWFDEKIKKLGVKNCYFPLFVSQSALEK 124

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +         +A+   PT E VM   +   ++S+R+LP    Q   
Sbjct: 125 EKTHISDFAPEVAWITRAGQSDLAEAIAIRPTSETVMYPSYAKWVQSHRDLPIKLNQWCN 184

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++   T   ++            +F  L L       
Sbjct: 185 VVRWEFKHPTPFLRTREFLWQEGHTAFQTKAEAED----------EVFKILDL------- 227

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                                    + D++++  I  + T    
Sbjct: 228 -------------------------------------YAQVYTDLLAIPVIKGRKTEKEK 250

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                    +   +P N     RGI+     + G  +S   + +F+  + G   Y    S
Sbjct: 251 FAGGEFTTTVEAYVPING----RGIQGATSHHLGQNFSKMFNISFEDPNGGGKVYAWQNS 306

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----AHDQ---VCRDACEKIY 369
           +G+ + R + AV+    D  G++ P  +A  ++ ++ +       D+      +  +++ 
Sbjct: 307 WGL-STRTIGAVVMIHGDNYGLVLPPRIAAIQMVIVPVGITARTKDEQKTALIEKAKEVN 365

Query: 370 ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L  VG     D       G +F   +L G P+++ +G K +++S++    R +G +  
Sbjct: 366 NILLDVGIRTELDVRDNISPGWKFNHWELKGVPVRIEIGPKDLANSQITCVIRYSGEKRI 425

Query: 429 MSLEEVINYASHRFSN 444
           + ++ +          
Sbjct: 426 IPIDVLATKCKDMLDE 441


>gi|325969359|ref|YP_004245551.1| prolyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323708562|gb|ADY02049.1| prolyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 510

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 152/417 (36%), Gaps = 66/417 (15%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGK 91
               KG Y W P G K    V   +R   + TG  E+  P     + L  ES     +  
Sbjct: 59  RYPVKGAYVWRPYGMKIRRLVETYVRFLHDETGHQEVLFPVFIPYEFLAKESEHIRGFES 118

Query: 92  EMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           E+  ++    N++ ++  PT E  M  +F+  IK + +LPF                   
Sbjct: 119 EVFWVSKGGANEERLVLRPTSETAMMPMFKLWIKDHTDLPF------------------- 159

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
                                            R++  + +     +A + P+       
Sbjct: 160 ---------------------------------RVYQIVSVFRAETKA-TRPMIRLREIS 185

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A T       ++  +   +      FD +     I ++      A +         
Sbjct: 186 MFKEAHTAHADREDAERQVREAVEIYKKIFDYLGIPYLINQRPEWDKFAGAVYTMAFD-- 243

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     + +++G + Y GT +S      +   +G   YV   SYGI + RV+AA+I
Sbjct: 244 ----TVMPDGKTMQIGTVHYLGTNFSKVFDVKYLTPNGDWDYVHTTSYGI-SERVIAAMI 298

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
               D KG++ P +VAP ++ +I I  K  +++       I   LS VG  V  DD  ++
Sbjct: 299 AMHGDDKGLVLPPNVAPIQVIIIPIMYKGTEEIILRETRSIQEELSNVGIRVKIDDRTDR 358

Query: 388 -IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             G ++   ++LG PL++ +G K + + +V +  R T  +     + +++      +
Sbjct: 359 TPGWKYNYWEMLGVPLRIEIGPKDIENRQVVLARRDTLEKYVAPRDGIVDTVRELLN 415


>gi|218132749|ref|ZP_03461553.1| hypothetical protein BACPEC_00610 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992475|gb|EEC58478.1| hypothetical protein BACPEC_00610 [Bacteroides pectinophilus ATCC
           43243]
          Length = 477

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 147/410 (35%), Gaps = 70/410 (17%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           M +   KG   + P G    +N+   +      TG   + +P      L   E    + +
Sbjct: 32  MCYSSVKGCMIFKPDGYAIWENIQHELDRRFKATGVKNVYMPMFIPESLLQREKDHVEGF 91

Query: 90  GKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
             E+  + +       + M   PT E +  D +++ I+SYR+LP    Q     R E + 
Sbjct: 92  APEVAWVTEGGLQPLQEKMCVRPTSETLFCDYYKNEIQSYRDLPQLCNQWCSVVRWE-KE 150

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGG 204
               +RSREFL ++ ++   T E ++    +M   Y       L +  I         G 
Sbjct: 151 TRPFLRSREFLWQEGHTAHATAEEAEARTQQMLNLYADFVEEVLAIPVIK--------GR 202

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               E    A+              + I +   D   + S  S         A       
Sbjct: 203 KTDKEKFAGAEAT------------YTIEALMHDGKALQSGTSHNFGDGFAKA------- 243

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                                    FG +Y+          D K  YV   S+G+   R+
Sbjct: 244 -------------------------FGIQYT--------DKDNKLKYVHQTSWGM-TTRL 269

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + A+I    D  G++ P  +AP ++ ++ +        D   +I   LS     V  DD 
Sbjct: 270 IGALIMVHGDNSGLVLPPRIAPVQVCIVPVMQKKPGVLDKAFEIKEVLSN--FRVKVDDS 327

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +  G +F+  ++ G PL++ +G + +  ++  +  R  G +  +SL+E+
Sbjct: 328 DKSPGWKFSEQEMRGIPLRIEMGPRDIEANQAVLVRRDNGEKITVSLDEI 377


>gi|330466285|ref|YP_004404028.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809256|gb|AEB43428.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 468

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 149/453 (32%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ F    Q+    A++A +  +  T +I           P G    + + A + +   
Sbjct: 8   RAEDFPRWYQDLIAKAKLADNGPVRGTMVIR----------PAGYAIWERMQAEMDDRIK 57

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDI 117
             GA     P          E+   + +  E+  +         + ++  PT E V+ + 
Sbjct: 58  AAGAENAYFPLFIPESYLKREAEHVEGFSPELAVVTHGGGKQLAEPVVVRPTSETVIGEF 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SYR+LP    Q     R ELRPR   +R+ EFL +                   
Sbjct: 118 MAKWIDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQ------------------- 157

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E      T E     ++  +         
Sbjct: 158 -------------------------------EGHTAHATREDARAYARKILHEAYEDLMV 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +   I  +  +         AT+    E              + +++G     G  ++  
Sbjct: 187 NVLGIPVVVGLKTARERFAGATATYTCEG--------MMGDGKALQLGTSHELGQNFAKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              ++  A+G   +    S+G  + R++  +I    D  G+  P  +AP +  ++ +K  
Sbjct: 239 FDISYSSAEGGREHAWTTSWG-TSTRMLGGLIMCHGDDNGLRVPPKLAPVQAYVMVVKDG 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D    +A  K+   L   G  V  DD  +   G +   A+L G+P++V VG + ++    
Sbjct: 298 D-GVGEAAAKLRDALRDAGVRVALDDRTDTPFGRRAVDAELRGYPVRVEVGPRDLAAGNA 356

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R  G +    + +V+         ++  L
Sbjct: 357 VVVRRTDGSKAPTPIADVVGAVLAALDADQQAL 389


>gi|291402378|ref|XP_002717441.1| PREDICTED: glutamyl-prolyl tRNA synthetase [Oryctolagus cuniculus]
          Length = 1460

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 142/455 (31%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      +++      E  + G    
Sbjct: 965  EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1024

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1025 YFPIFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1084

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E           +   +
Sbjct: 1085 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFE----------EAAEEV 1134

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L +                                +      +    T+ +    
Sbjct: 1135 LQILDLYAR----------------------------VYEELLAIPVVKGRKTEKEKFAG 1166

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1167 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMCEIVFED 1206

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +I    D  G++ P  VA  ++ +I         +
Sbjct: 1207 PKTPGEKQFAYQCSWGLT-TRTIGVMIMVHGDNMGLVLPPRVASVQVVVIPCGITNALSE 1265

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL  V   V  D       G +F   +L G P+++ VG + + + 
Sbjct: 1266 EDKEALIAKCNDYCRRLLSVSIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNC 1325

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1326 QFVAVRRDTGEKLTIAENEAETKLQTILEDIQANL 1360


>gi|302854330|ref|XP_002958674.1| hypothetical protein VOLCADRAFT_84558 [Volvox carteri f.
           nagariensis]
 gi|300255999|gb|EFJ40277.1| hypothetical protein VOLCADRAFT_84558 [Volvox carteri f.
           nagariensis]
          Length = 446

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 138/420 (32%), Gaps = 76/420 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN-- 100
           P G    + + + +       G      P L        E+   + +  E+  +      
Sbjct: 5   PYGYAIWETIQSYLDGRFKELGVQNAYFPQLIPYSFITKEAEHVEGFAPELALVTKGGGK 64

Query: 101 --DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E ++  +F   ++SYR+LP    Q     R E+R R   +R+ EFL +
Sbjct: 65  DLEEPLVVRPTSETIINHMFAQWVQSYRDLPLQLNQWCNVHRWEMRTR-PFVRTLEFLWQ 123

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +M      ++    +                            
Sbjct: 124 EGHTAHATAEEAEEEARRMID----VYTDFAIN--------------------------- 152

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +P   +  +     N                                
Sbjct: 153 -------MAAMPVVPGRKSRIESFAGANCTYTIEAM---------------------MGD 184

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G     GT ++      +   + K H+V   S+G+ + RV+  +I +  D KG+
Sbjct: 185 RRALQAGTSHNLGTNFAKAFGTQYLNRESKRHFVHQTSWGV-STRVIGGIIMTHGDDKGL 243

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             P  +AP +  +I I   ++      +A +++       G  +  D+  +  G ++   
Sbjct: 244 RLPPRLAPVQAVIIPIVKKEEDRVPVNEAAQRLAEAAKVAGIRIDSDER-QTPGWKYNYW 302

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPVL 449
           ++ G P++V VG K V         R      G +  + +E    + +        +  L
Sbjct: 303 EMRGVPVRVEVGPKDVQSGTCVTARRDMPGKEGKQMGVPMESAAFVAHIKGLLEEVQTGL 362


>gi|110639601|ref|YP_679811.1| prolyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|122966540|sp|Q11Q45|SYP_CYTH3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110282282|gb|ABG60468.1| prolyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 491

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 150/450 (33%), Gaps = 88/450 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++L+ R  +      +G     P G    + + A++ +    TG      P       L 
Sbjct: 17  NELVKRADLAENAPVRGCMIIKPYGYSIWEKMQAVLDKMFKETGHSNAYFPLFIPKSYLS 76

Query: 81  VESGRYDSYGKEMLRLA------DRN------------DKAMIYGPTHEEVMTDIFRSHI 122
            E+   D + KE   +       D N            D+ +I  PT E V+ + +++ I
Sbjct: 77  KEASHIDGFAKECAVVTHYRLKNDENGKGIIVDPEAKLDEELIVRPTSETVIWNTYKTWI 136

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +S+R+LP    Q     R E       MR+R FL    + +                   
Sbjct: 137 QSHRDLPLLINQWANVVRWE-------MRTRLFLRTTEFLWQ------------------ 171

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                              E     +          +  +    
Sbjct: 172 -----------------------------------EGHTAHATKQEAIVETEQMMNVYAT 196

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            + N +         + ++           E      + ++ G   + G  ++      F
Sbjct: 197 FAQNFMALPVHRGIKSANERFAGAEETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKF 256

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +G   YV   S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I    +   
Sbjct: 257 ASKEGSLEYVWGTSWGV-STRLMGALIMAHSDDEGLVLPPLLAPIQVVIVPIFKTAEQLD 315

Query: 363 --DACEK-IYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             +A  K I A L      V +D   +   G +FA  +L G PL+V +G++ + +  VE+
Sbjct: 316 LIEATLKPILAALKAKDISVKFDHSDKYSPGFKFAEYELKGVPLRVAIGARDIENGTVEL 375

Query: 419 KHRLTGIREDMS---LEEVINYASHRFSNN 445
             R T  +  +    L + I         N
Sbjct: 376 ARRDTKEKTTVPQEGLADTIEKLLQEIQEN 405


>gi|313158764|gb|EFR58151.1| proline--tRNA ligase [Alistipes sp. HGB5]
          Length = 494

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 153/449 (34%), Gaps = 85/449 (18%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++ G+    + +G     P G    + ++  + +    TG      P       +  E
Sbjct: 22  LVVKAGLAENSAVRGCMVIKPYGYAIWEKMHDALDKMFKDTGHQNAYFPLFIPKSFFSKE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + +++ I+S
Sbjct: 82  AHHVEGFAKECAVVTHYRLKNDPEGKGVVVDPDAKLEEELIVRPTSETIIWNTYKNWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E       MR+R         F  T E                
Sbjct: 142 YRDLPILCNQWANVVRWE-------MRTR--------LFLRTAE---------------- 170

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                       L   G T     ++ ++      +        
Sbjct: 171 ---------------------------FLWQEGHTAHATREEAVEEAEKMIHVYQRFAEE 203

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S+                E       E      + ++ G   + G  ++      +  
Sbjct: 204 WMSLPVVVGHKSPNERFAGAEDTL--TIEALMQDGKALQSGTSHFLGQNFAKAFDVQYVN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I   D    + 
Sbjct: 262 KEGKLEYVWATSWGV-STRLMGALIMAHSDNNGLVLPPKLAPIQVVMIPIYKGDDQLAEI 320

Query: 365 C---EKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               E I A+L   G  V  DD    + G +FA  +L G P+++ +G + + +  +E+  
Sbjct: 321 RTRFEAIAAQLKAKGISVKIDDRDNVRSGFKFAEYELKGVPVRLAMGPRDMENGTIELVR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R T  ++ +S E ++       +  +  +
Sbjct: 381 RDTLEKQTVSQEGLVERIEGLMTEIQENI 409


>gi|224084293|ref|XP_002191292.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 447

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 131/436 (30%), Gaps = 75/436 (17%)

Query: 17  DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +A    H+ + +       H+ S G   +LP G    + +   IR E    G  E+  P 
Sbjct: 76  EAAQRDHRRIGKDQELFFFHKFSPGSCFFLPRGAHVYNTLVEFIRSEYRARGFSEVVTPN 135

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L S  LW  SG +  Y   +  +     + +   P +      +F    +S+R LP    
Sbjct: 136 LFSPRLWELSGHWQHYSPHIFSVPAAP-EPLSLKPMNCPAHCLMFAHRPRSWRELPLRLA 194

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+E      G+ R R F   DA+ F  T E      +        ++  LG   
Sbjct: 195 DFGVLHRNEPPGTLTGLTRVRRFQQDDAHIF-CTLEQVSSEIDSSLDFIRTVYAVLGFSF 253

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P G     E    A+    +   +        P +                 
Sbjct: 254 R-LALATRPDGFLGDPETWDRAEQQLERSLQNFGQPWELSPGDG---------------- 296

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               A      + ++ D+L  + +     ++      F  +Y+ P+              
Sbjct: 297 ----AFYGPKIDIRIRDALGRHHQCGTIQLDFQMPERFELEYARPL-------------- 338

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                                          ++P +  +I          D   ++ A L
Sbjct: 339 ------------------------------WLSPLQAMVIPQTP---EVEDYAREVQAVL 365

Query: 373 SKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            + G     D D G  +  +   A L  +  Q++VG +      V ++ R      ++ L
Sbjct: 366 RRGGLLADLDGDPGTTLARKIRRAQLTHYNFQLVVGRREREHGTVSVRTRENRQLGELEL 425

Query: 432 EEVINYASHRFSNNRP 447
             V+        +  P
Sbjct: 426 PRVLRRLQELRDSRVP 441


>gi|332827078|gb|EGJ99863.1| prolyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 493

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 162/449 (36%), Gaps = 85/449 (18%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +    + +G     P G    + +   + +    TG +    P          E
Sbjct: 22  LVMKADLAENSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLFIPKSFLSKE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +   + + KE   +                    + ++ +I  PT E ++ + +R+ I+S
Sbjct: 82  ADHVEGFAKECAVVTHYRLKNDPDGKGVIVDPEAKLEEELIVRPTSETIIWNTYRNWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E       MR+R         F  T E                
Sbjct: 142 YRDLPILVNQWANVVRWE-------MRTR--------LFLRTAEFLWQE----------- 175

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                  H      +  E +     +            F +   
Sbjct: 176 ----------------------GHTAHATREEAEAETIQMLNVYAQ--------FAEEYM 205

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +++   +     +   +    +++ ++     + ++ G   + G  ++      F  
Sbjct: 206 AMPVIKGVKSASERFAGAVDTYTIEAMMQDG----KALQSGTSHFLGQNFAKAFDVRFAD 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---C 361
            +GK  +V   S+G+ + R++ A+I +  D  G++ P  +APF++ ++ I   D+     
Sbjct: 262 KEGKMEHVWATSWGV-STRLIGALIMAHSDDNGLVLPPKLAPFQVVIVPIYKGDEQLALI 320

Query: 362 RDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  + +   L  +G  V +D+   ++ G +F+  +L G P+++ +G++ + ++ VE+  
Sbjct: 321 NEKVDGLVKSLKALGISVKYDNADNKKPGWKFSEYELKGVPVRLAMGARDMENNTVEVAR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R T  +E +S + +  Y  +     +  +
Sbjct: 381 RDTLTKETVSCDGLDIYIKNLLDEIQANI 409


>gi|50365293|ref|YP_053718.1| prolyl-tRNA synthetase [Mesoplasma florum L1]
 gi|81827288|sp|Q6F0Y9|SYP_MESFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50363849|gb|AAT75834.1| prolyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 473

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 161/448 (35%), Gaps = 82/448 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++   +     +A++AS+  +          KG   + P G    + +   +  +  
Sbjct: 14  FSQWYTDTV----INAKLASYGPV----------KGTIIFRPYGYAIWELIQKYLDAKFK 59

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDI 117
                 +  P L    L+  E    + +  E+  +    D    + +   PT E +M + 
Sbjct: 60  ELEVQNVYFPLLIPQSLFQKEKDHIEGFSPEIATVTRVGDTPLPEPLFIRPTSEVLMANF 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F++ +KSYR+LP  F Q     R E         +R FL    + +            + 
Sbjct: 120 FKNEVKSYRDLPLIFNQWTNVMRWEKT-------TRPFLRTSEFLWQ-EGHTVHSERKEA 171

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L+I                    D   EF   A             +   IP + T
Sbjct: 172 SDLTLKIL-------------------DTYTEFAQNA------------LLLPVIPGKKT 200

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           + +     +S     +                          + ++ G   YF   +S P
Sbjct: 201 EKEKFAGADSTYTIESL---------------------MHDGQALQCGTSHYFADNFSKP 239

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  +GK  +    S+G+ + R++ A+I +  D  G++ P  V+P ++ LI IK  
Sbjct: 240 YEIKFQNKEGKLEHAYSTSWGV-STRLIGAIIMTHSDDNGLVLPSMVSPVQVRLIQIKET 298

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+V +   E I   L      V  D   +  G + + A++ G PL++ +G + + +++V 
Sbjct: 299 DEVIK-VTEDIKEALKNK-YRVDIDKTDKSFGFKISEAEIKGIPLRIEIGPRDLENNQVT 356

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I  R T  +  +++ EV N         
Sbjct: 357 ISRRDTREKIQVNVNEVTNIVDQMIKEY 384


>gi|301613126|ref|XP_002936064.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase isoform 2 [Xenopus
            (Silurana) tropicalis]
          Length = 1553

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 144/450 (32%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 1058 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 1117

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1118 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1177

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E           +   +
Sbjct: 1178 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATYE----------EAAEEV 1227

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  +   I                             +    T+ +    
Sbjct: 1228 LQILDL-YARVYEDLLAI---------------------------PVVKGRKTEKEKFAG 1259

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S+R I+     + G  +S      F+ 
Sbjct: 1260 GDYTTTVEAFISA--------------------SSRAIQGATSHHLGQNFSKMFEIVFED 1299

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G   Y    S+G+ + R + A+     D  G++ P  VA  ++ +I         +
Sbjct: 1300 PKTPGLKQYAYQNSWGL-STRTIGAMTMVHADNIGMVLPPRVACVQVIIIPCGITNTLSE 1358

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +DA    C++   RL  V      D       G +F   +L G P+++ VG + + + 
Sbjct: 1359 EDKDALLKKCDQYLKRLLNVDVRARADVRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNK 1418

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R  G ++ +S ++           
Sbjct: 1419 QFVAVRRDNGEKQTISEDQAETRLKEILEE 1448


>gi|256372009|ref|YP_003109833.1| threonyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008593|gb|ACU54160.1| threonyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 623

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 138/434 (31%), Gaps = 41/434 (9%)

Query: 16  RDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            +AE   H+ + +         +   G+  + P G      +    R      G + +  
Sbjct: 219 AEAERRDHRRLGQEQRLFFFPREIGGGLPVFEPDGAWVRYRLEEFSRRIHFAAGYVPVWT 278

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    L+  SG    Y + M    + +D+     P    +    +R H +SYR LP  
Sbjct: 279 PHVTRGALFELSGHLGWYRESMYPAMELDDEEYFLKPMSCPMHILAYRQHPRSYRELPLR 338

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            +++   +R E      G+ R R     DA+ F    +        +    +R+    GL
Sbjct: 339 LFELATVYRYERSGTLHGLARVRSLTQDDAHIF-CRGDQLADELTGVLDLAMRLLGAFGL 397

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                   + P     S E    A +                  E               
Sbjct: 398 NDFEAELSTRPAKSVGSDEDWEFATSAARSALERSGLTYRVAEGEG-------------- 443

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-D 309
                 A  +   +  L D++    ++S   +++        ++       ++GAD + +
Sbjct: 444 ------AFYAPKIDIHLRDAIGRRWQLSTVQVDL----QLPQRF----DLGYQGADNRME 489

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +     G++    A++    DG+    P  +    + ++ +           E++ 
Sbjct: 490 RPFMIHRALFGSVERFLAILIEHFDGE---LPPWLVREPVRILPVA---HEAAGWAEEVR 543

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L   G         E +G++   A     P  V+VG+  V+   V +          +
Sbjct: 544 AALVAAGVGAQVVAADEPLGARVRRARTERVPYIVVVGNDDVAAHSVGLTRPDRSQARGV 603

Query: 430 SLEEVINYASHRFS 443
           +LE  I+  +   +
Sbjct: 604 ALETAIDEIARAVA 617


>gi|242010725|ref|XP_002426109.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212510156|gb|EEB13371.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 1305

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 144/441 (32%), Gaps = 74/441 (16%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
            +++ +  MI  +   G Y   P      + +   +  E    G +    P   S   L  
Sbjct: 822  QVITKGEMIEYYDVSGCYILRPWSFALWEVIRNFLDGEIKSLGVVNCYFPIFVSKSVLEK 881

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E    D +  E+  +    +    + +   PT E VM   F   ++SYR+LP    Q   
Sbjct: 882  EKNHIDDFAPEVAWVTKSGESDLSEHIAIRPTSETVMYPAFSKWVQSYRDLPIKLNQWNN 941

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++   + + ++            ++  L L    +  
Sbjct: 942  VVRWEFKHPQPFLRTREFLWQEGHTAFASYKDAETE----------VYQILDL-YARVYT 990

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +   I                             +    T  +     +          A
Sbjct: 991  DLLAI---------------------------PVVKGWKTKKEKFAGSDFTTTVEAFIPA 1023

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                                S RGI+     + G  +S   +  ++  +  +  +V   S
Sbjct: 1024 --------------------SGRGIQAATSHHLGQNFSKMFNIVYEDPETQEKKFVYQNS 1063

Query: 317  YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIY 369
            +GI   R +  +I    D KG++ P   + +++ ++             +   +AC+ + 
Sbjct: 1064 WGIT-TRSIGIMIMVHADNKGLVLPPEASSYQLVIVPCGITASLKEEEKKNLLNACKNLE 1122

Query: 370  ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
                  G  V  DD      G +F   +L G PL+V +G   +   ++    R TG +  
Sbjct: 1123 KDFINSGIRVKLDDRDNYSPGWKFNHWELKGVPLRVELGPTDLEKGQLTAVRRDTGEKIQ 1182

Query: 429  MSLEEVINYASHRFSNNRPVL 449
            + L   I        N +  L
Sbjct: 1183 IQLTNKIPETKKLLKNIQENL 1203


>gi|190348971|gb|EDK41532.2| hypothetical protein PGUG_05630 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 685

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 135/423 (31%), Gaps = 69/423 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVESGRYDSYGKEMLR 95
            G Y   P      + +      +  + G      P  + S  L  E    + +  E+  
Sbjct: 212 SGCYILRPNSYHVWEQIQDWFNIQIKKLGVRNAYFPMFVSSRVLEKEKDHIEGFAPEVAW 271

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 272 VTKAGNSELEEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 331

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT + +     K+   Y +I+    L ++P+                
Sbjct: 332 TREFLWQEGHTVHLTDKEADEQVMKILDLYTKIYEE--LLAVPV---------------- 373

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V     E + F   ++              I    S              V N +  D  
Sbjct: 374 VKGKKTENEKFAGGNYTTTVEGFIGATGRGIQGATSHHLGTNFSKMFNITVENPEGADKP 433

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 ++ G+                                      + RV+  ++ +
Sbjct: 434 KVYGVQTSWGL--------------------------------------STRVIGVMVMT 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM 384
             D KG++ P  VA  ++ +I +    +   D           I ARL+     V  D  
Sbjct: 456 HSDNKGLVLPPRVAQTQVVVIPVGLTSKTADDERKGINDGAADIEARLNAADVRVTSDYR 515

Query: 385 G-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                G +FA  +L G PL+V  G K ++  +V    R  G +  + L E+         
Sbjct: 516 DTYTSGWKFANWELKGVPLRVEFGPKDMAQEQVTAVRRDNGEKYTVKLAELETRIPELLE 575

Query: 444 NNR 446
             +
Sbjct: 576 TMQ 578


>gi|168057512|ref|XP_001780758.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667776|gb|EDQ54397.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 536

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 168/462 (36%), Gaps = 90/462 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L ++      AE+A +  +  T +I           P G    + + + +     
Sbjct: 66  FSKWYLDVIDA----AELADYGPVRGTMVIR----------PYGYAIWEFIQSWLDARFK 111

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P L       +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 112 ETGHSNMYFPQLIPYSFIEKEASHVEGFSPELALVTIGGGKELEERLVVRPTSETIVNHM 171

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++   +PE ++    +M
Sbjct: 172 FAQWVQSYRDLPLLINQWANVHRWEMRTR-PFVRTLEFLWQEGHTAHTSPEEAEEEALRM 230

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y          +    A    +G     E    A               + I +   
Sbjct: 231 IEVYREF-------AYSQAAIPVVVGRKSRLETFAGASIT------------YTIEAMMG 271

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + +  S         A  +   +EK                ++ +++         
Sbjct: 272 DRRALQAGTSHNLGQNFAKAFNTQYTDEKG---------------DLQYVWQ-------- 308

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                             S+G+ + R+V  +I +  D  G+++P  VAP ++ ++ I   
Sbjct: 309 -----------------TSWGM-STRMVGGIIMTHGDDTGLLFPPRVAPLQVVIVPIWKK 350

Query: 358 DQV---CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D+       A EK    L   G  V  D    +  G +F   ++ G P+++ +G + V++
Sbjct: 351 DEQKADVMAAAEKTEKILKGAGLRVKLDVSDQKTAGFKFNFWEMKGVPIRIEIGPRDVAE 410

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
           + + +  R      G +  +S+EE  ++ +  +R    +  L
Sbjct: 411 NVLVVARRDVPGKDGKQFGVSMEEKPLVEFVKNRLEEIQESL 452


>gi|331087229|ref|ZP_08336299.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408915|gb|EGG88376.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 479

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 145/424 (34%), Gaps = 69/424 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S KG     P G    +N+   +      TG   + +P      L   E 
Sbjct: 26  VKKAELIDYTSVKGCMVIKPAGYAIWENIQHELDRRFKETGVENVYLPMFIPESLLQKEK 85

Query: 84  GRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +         + +   PT E +  D +   I+S+R+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTHGGLEPLQERLCVRPTSETLFCDFYAKDIQSHRDLPKVYNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAE 198
           R E +     +RSREFL ++ ++   T E ++     M   Y       L +  I     
Sbjct: 146 RWE-KTTRPFLRSREFLWQEGHTAHATAEEAEERTIMMLNVYADFCEEVLAIPVIK---- 200

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               G     E    A+              + I S   D   + S  S         A 
Sbjct: 201 ----GRKTDKEKFAGAEAT------------YTIESLMHDGKALQSGTSHNFGDGFAKA- 243

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                                          FG +Y+          + K  YV   S+G
Sbjct: 244 -------------------------------FGIQYT--------DKENKLQYVHQTSWG 264

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +   R++ A+I    D  G++ P  +AP ++ +I I+       D   ++   L K G  
Sbjct: 265 MT-TRMIGAIIMVHGDNSGLVLPPRIAPVQVMVIPIQQKKDGVLDKAYEVKEVLKKAGLS 323

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  +  G +F+  ++ G P+++ +G K +      +  R T  +  +  EE+    
Sbjct: 324 VKVDDSDKSPGWKFSEQEMRGIPVRIELGPKDIEAGHAVVVRRDTREKIIVPFEELETKV 383

Query: 439 SHRF 442
           +   
Sbjct: 384 AEVL 387


>gi|57530349|ref|NP_001006398.1| bifunctional aminoacyl-tRNA synthetase [Gallus gallus]
 gi|53133756|emb|CAG32207.1| hypothetical protein RCJMB04_20b9 [Gallus gallus]
          Length = 1601

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 137/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  +   G Y   P      + +      E  + G    
Sbjct: 1106 EAKKEENLADWFSQVITKAEMIEYYDVSGCYVLRPWAYAIWEAIKNFFDAEIKKLGVENC 1165

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1166 YFPMFVSQAALEKEKSHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1225

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +        +  +Y +   +   +
Sbjct: 1226 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGH-------SAFATYEE---AAEEV 1275

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                       A   E  +          +    T+ +    
Sbjct: 1276 MQILDL----------------------YAQVYEDLLAI------PVVKGRKTEKEKFAG 1307

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1308 GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEVMFED 1347

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  Y    S+GI   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1348 PKKPGEKQYAYQNSWGIT-TRTIGVMTMIHGDNVGLVLPPRVACVQVVIIPCGITNTLSE 1406

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C +   RL      V  D       G +F   +L G P+++ VG + +   
Sbjct: 1407 EDKEALLKKCNEYRKRLLSANVRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSQ 1466

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +   S  E  +        
Sbjct: 1467 QFVAVRRDTGQKLTFSEHEAEDKLKQVLEE 1496


>gi|146413278|ref|XP_001482610.1| hypothetical protein PGUG_05630 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 685

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 135/423 (31%), Gaps = 69/423 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVESGRYDSYGKEMLR 95
            G Y   P      + +      +  + G      P  + S  L  E    + +  E+  
Sbjct: 212 SGCYILRPNSYHVWEQIQDWFNIQIKKLGVRNAYFPMFVSSRVLEKEKDHIEGFAPEVAW 271

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 272 VTKAGNSELEEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 331

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT + +     K+   Y +I+    L ++P+                
Sbjct: 332 TREFLWQEGHTVHLTDKEADEQVMKILDLYTKIYEE--LLAVPV---------------- 373

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V     E + F   ++              I    S              V N +  D  
Sbjct: 374 VKGKKTENEKFAGGNYTTTVEGFIGATGRGIQGATSHHLGTNFSKMFNITVENPEGADKP 433

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 ++ G+                                      + RV+  ++ +
Sbjct: 434 KVYGVQTSWGL--------------------------------------STRVIGVMVMT 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM 384
             D KG++ P  VA  ++ +I +    +   D           I ARL+     V  D  
Sbjct: 456 HSDNKGLVLPPRVAQTQVVVIPVGLTSKTADDERKGINDGAADIEARLNAADVRVTSDYR 515

Query: 385 G-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                G +FA  +L G PL+V  G K ++  +V    R  G +  + L E+         
Sbjct: 516 DTYTSGWKFANWELKGVPLRVEFGPKDMAQEQVTAVRRDNGEKYTVKLAELETRIPELLE 575

Query: 444 NNR 446
             +
Sbjct: 576 TMQ 578


>gi|224129118|ref|XP_002320505.1| predicted protein [Populus trichocarpa]
 gi|222861278|gb|EEE98820.1| predicted protein [Populus trichocarpa]
          Length = 322

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 117/355 (32%), Gaps = 38/355 (10%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M       D+     P +      +++  + SYR+ P    ++   +R EL     G+ R
Sbjct: 1   MFDQMKIEDEQYQLRPMNCPYHILLYKRKLNSYRDFPIRVAELGTVYRYELSGSLHGLFR 60

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F L  +  K     +      I  + G +   +   + P       +  
Sbjct: 61  VRGFTQDDAHIFCL-EDQIKDEIRGVLDLTEEILLQFGFRRYEVNLSTRPEKSVGDDDIW 119

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A +        K +                             A      + K+ D+L
Sbjct: 120 EKATSALRDALDDKGWSFQIDEGGG--------------------AFYGPKIDLKIEDAL 159

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIE 330
               + S   ++    F    ++      T+  ++  K   + +    +G++     V+ 
Sbjct: 160 GRKWQCSTIQVD----FNLPQRF----DVTYVDSNTEKKRPIMIHRAVLGSLERFFGVLI 211

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G   +W   ++P ++ ++ +        + C+++ ++L   G        GE++  
Sbjct: 212 EHYAGDFPLW---LSPVQVRILPVT---DTQLEYCKEVISKLKGNGIRAEV-CQGERLPK 264

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               A+    PL  +VG K      V I+ R +G    + +++ I+         
Sbjct: 265 LIRNAEKQKIPLMAVVGPKEAETQTVTIRSRFSGEVGTIEIDDFISRIKSAIERR 319


>gi|159155613|gb|AAI54534.1| LOC562037 protein [Danio rerio]
          Length = 476

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 131/435 (30%), Gaps = 75/435 (17%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDS 88
           MI  +   G Y   P      D +      E  + G      P   S A L  E      
Sbjct: 1   MIEYYDVSGCYVLRPWSYSIWDAIKEFFDREIKKLGVENCYFPMFVSQAALEKEKTHIAD 60

Query: 89  YGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +         + +   PT E VM   +   ++S+R+LP    Q     R E +
Sbjct: 61  FAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK 120

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +R+REFL ++ ++   T E +     +     L ++ R                 
Sbjct: 121 HPQPFLRTREFLWQEGHTAFATKEEATEEVLQ----ILDLYAR----------------- 159

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                               +      +    T+ +     +          A       
Sbjct: 160 -----------------VYEELMAIPVVKGRKTEKEKFAGGDYTTTVEAFISA------- 195

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAM 322
                        S R I+     + G  +S      F+     G+       S+GI   
Sbjct: 196 -------------SGRAIQGATSHHLGQNFSRMFEIVFEDPKKPGEKQLAYQNSWGIT-T 241

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKV 375
           R +  +     D  G++ P  VA  ++ +I         +A   +  D C K  +RL K 
Sbjct: 242 RTIGVLTMVHGDNMGLVLPPRVACLQVIIIPCGITATLPEAEKDLLLDQCSKYLSRLQKA 301

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              V  D       G +F   +L G P++  VG K +   +     R TG +  +   + 
Sbjct: 302 DIRVKADLRDNYSPGWKFNHWELKGVPIRFEVGPKDLKQGQFVAVRRDTGEKITVKEADA 361

Query: 435 INYASHRFSNNRPVL 449
                +     +  L
Sbjct: 362 EKKIPNLLEEIQNNL 376


>gi|315425642|dbj|BAJ47301.1| prolyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 484

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 162/436 (37%), Gaps = 72/436 (16%)

Query: 24  KLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           KL+L   ++      KG   +L  G   L  V  ++ +E   TG  EM  P + + +L  
Sbjct: 26  KLLLEARIVDDRFPVKGFSVYLENGAYILRRVREMLEKELRETGHKEMIFPLVTTEELLG 85

Query: 81  VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+     +  E+  +     K +    I  PT E +M  +F+  I+S+ +LP   +Q  
Sbjct: 86  KEAQHIKGFSTEVFVIESAGGKPLDVKLIVRPTSETIMYPMFKLWIRSHADLPLLVHQSN 145

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           + +R E +    ++R RE    +A                                    
Sbjct: 146 MVYRHETKATRPLLRVREIPWNEA------------------------------------ 169

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                      H     A   E QV  + +     +      +  +   +         +
Sbjct: 170 -----------HTVHATAAEAEQQVRKAVEIYRKVLDQLGLAYLVLKRPD---------F 209

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                      FD+   + RV+    +V  +   G  +S      F+  DGK        
Sbjct: 210 DKFPGARYSIAFDAWNPDGRVN----QVATVHNLGKNFSKVFEIEFETRDGKRENPHQLC 265

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSK 374
           YG G  RV+AA+I    D +G++ P  VAP  + ++ I  K  ++  +  C  +  RL K
Sbjct: 266 YGFGYSRVLAALISQHGDDRGLVLPPVVAPLHVVIVPIVFKGQEESIKQFCHSLAERLQK 325

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               V  DD      G +F   + LG P+++ +G + V++++  +  R T  ++ +++EE
Sbjct: 326 --FAVKVDDREDVTPGEKFYHWEKLGVPVRLEIGPREVAENRATLFRRDTLEKQVVAVEE 383

Query: 434 VINYASHRFSNNRPVL 449
           +     +  +N    L
Sbjct: 384 IERAVENVLTNMGQSL 399


>gi|71893938|ref|YP_279384.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
 gi|71852065|gb|AAZ44673.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 579

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 158/440 (35%), Gaps = 33/440 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      KL L T        G   WL  G +  + +   I E     G
Sbjct: 170 FLGILQERQERDHRKIGAKLKLFT-FSSYFGHGFPVWLENGMRIYNKIRQKILEFDRNYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P     +L+  SG    Y  +M +     ++ +I  P        +F   + SY
Sbjct: 229 FKEVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIPRPMTCPHHIILFSQQLFSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           RNLP+   +    +R E      G+ R R   + + + F ++        + +F     +
Sbjct: 289 RNLPYRISEQSRLYRYEKSGALLGLERVRAMDLTEGHIF-VSKSQIFSEISHLFQMISEV 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +                   D      F   D M     ++   F D   
Sbjct: 348 LDFFKVQIFYISFSKR--------------DPKNKDKFFQDDQMWEQAEADLKQFLDQNK 393

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +N I +   A  A      + ++  +L +   +S   ++    F    K+ +     +  
Sbjct: 394 INYIEKIGEA--AFYGPKIDFQVKTALNKELTISTLQLD----FLLPEKFKISFINEY-- 445

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K+  + +    IG      A++     G    W   ++P +I +I +    +   D 
Sbjct: 446 -NKKETPILIHRGLIGTYERFIALLLEQSKGNLPFW---ISPKQIIVIPVA---EKHNDF 498

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +KI+  L  +G +   D   E+I  +   A+L     QVI+G + ++ +++  +   + 
Sbjct: 499 AQKIHKILFDLGFNSEIDLRSERISRKIREANLEKINFQVIIGDEEITKNEITYRKFGSP 558

Query: 425 IREDMSLEEVINYASHRFSN 444
               +SL + ++   +   N
Sbjct: 559 ELFRISLVDFVDLLKNSEKN 578


>gi|320586315|gb|EFW98994.1| threonyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 524

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 149/466 (31%), Gaps = 87/466 (18%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G +  + +   +R++  R G  E+  PT+    LW +SG  ++Y  +M 
Sbjct: 92  YSPGSPIFLPNGARVFNRLVDFLRKQYVRYGFQEVITPTIYKKALWAKSGHLENYADDMF 151

Query: 95  RLA-------DRNDK------------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            +        +R  +                 P +      IF +   SYR+LP  +   
Sbjct: 152 TVTSASLATGERRGEGGATPGPQDLEDEYGLKPMNCPGHCLIFAAQRHSYRDLPIRYADF 211

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               RDEL     G+ R R F   D + F   P+  +             +  LGL    
Sbjct: 212 SPLHRDELSGALSGLTRVRRFHQDDGHVF-CRPDQVEAEIRATLDFVRHTYDVLGLGPYR 270

Query: 195 MRAESGPIGGD--LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           +   + P+ G    + +    A+    +            P +                 
Sbjct: 271 LVLSTRPLDGHLIGTADDWDAAEDALRRALDHSHSAWTVSPGDG---------------- 314

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF---KGADGKD 309
               A      +  L DS  +  + +   ++    F    +++L         K      
Sbjct: 315 ----AFYGPKIDVVLRDSDGKEHQTATVQLD----FQLPKRFALTYQEAVPKTKAEVEAA 366

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++   +DG    WP  + P +++++ +    +        + 
Sbjct: 367 RPVLIHRAVLGSVERLMALLIEHYDG---RWPFWLNPRQVAVLTVN-DSEPVVAFARHVQ 422

Query: 370 A-------------------RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           A                    L      V  DD    +  +   A   G+   V+VG K 
Sbjct: 423 AVLNGTAETQDVPLGSLSAPTLLAA---VDLDDSARTLPLKVREARSKGYGAVVVVGPKD 479

Query: 411 VSDSKVEI----------KHRLTGIREDMSLEEVINYASHRFSNNR 446
           V+   V +            R T    DM  EE++     + S  +
Sbjct: 480 VARGTVAVDLSGIPVQEQAERSTK-SVDMKPEELLALLLQKASTYQ 524


>gi|41615004|ref|NP_963502.1| prolyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M]
 gi|74580044|sp|Q74ND5|SYP_NANEQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|40068728|gb|AAR39063.1| NEQ210 [Nanoarchaeum equitans Kin4-M]
          Length = 537

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 174/443 (39%), Gaps = 24/443 (5%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           ++++ +  +I       G+  + P G KA   + +++  +    GA     P +    ++
Sbjct: 13  NEIVRKANIIDDAYPVKGMPVYKPYGYKAFKFLMSLLENKLESIGAEPAWFPIVIPYSIF 72

Query: 81  V-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             ES     + +E+  +     D+ +  +I  PT E  M  +F   I+SYR+LP   Y  
Sbjct: 73  KKESEHIKGFEEEVFWIERAGNDKLEDPLILRPTSETEMYYMFAKWIESYRDLPLIIYMT 132

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIP 194
              +R E +    ++R RE L  + +S   + E ++    K    Y  IF   L L  I 
Sbjct: 133 NTVYRYETKSTKALIRGREVLWNETHSVHRSEEDAREHMAKAKEVYDYIFWDVLYLPYIW 192

Query: 195 MRA---ESGPIGGDLSHEFIVLAD-----TGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           +R    +  P G +      ++ D      G   +   K  + F I   +         +
Sbjct: 193 VRRPEWDKFPGGEETYAADAIMPDGRFLQVGTIHLLGQKFAIPFEIKFLDYHPFYKKYGD 252

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             +               ++ ++ L + K      I++G   Y  T  S+          
Sbjct: 253 PNIYIKDKNGNEYKVHAPKEFWEELEKGKLTKTYTIKIGDKEY--TISSIEEINEKLKEY 310

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDAC 365
               YV   SYGI +MR     +    D  G++ P  +AP +I +I I   D     +  
Sbjct: 311 DFRKYVWQTSYGI-SMRAFGGALYWLGDDLGLVMPYKIAPIQIVIIPILGKDDTKVIEYS 369

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +K+Y  L K    V+ D D  +  G ++   DL+G PL++ +G K V ++ + I  R   
Sbjct: 370 KKVY-ELIKDKYRVYLDSDDTKTPGYKYYYYDLIGVPLRIDIGLKEVENNSITIVRRDNK 428

Query: 425 IREDMSLEEV--INYASHRFSNN 445
            +  +SL E+  I+        +
Sbjct: 429 KKYTISLNELEKIDQIFKEMEED 451


>gi|325282970|ref|YP_004255511.1| Prolyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314779|gb|ADY25894.1| Prolyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 505

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 159/448 (35%), Gaps = 79/448 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     E  R A++A H  +    ++           P G    + +   + +   
Sbjct: 31  QSEDFNDWYNEVVRKADLADHSPVAGAMVVK----------PYGTALWERIQRGLDDRFK 80

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
            TG   +  PTL     +  E+   + +  E+  +     +   +  +  PT E ++  +
Sbjct: 81  ATGHQNLLFPTLIPMGFIMKEADHVEGFAPELFTVSKIGTEELAEPYVMRPTSETIIGHM 140

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   + SYR+LPF   Q    FR E       +R++ FL                     
Sbjct: 141 WSGWLNSYRDLPFLHNQWGSVFRAE-------LRTKPFLRTS------------------ 175

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  F + G  +    AE+         E+           FC        +  E T
Sbjct: 176 -----EFFWQEGHTAHASEAEARAEVRQQLDEYHS---------FCRDVLALPVVRGEKT 221

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +      +                                + ++ G   Y G  +S  
Sbjct: 222 ASERFAGAENTYSIEGM---------------------MRDGKALQSGTSHYLGQNFSRA 260

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+ A+ ++ +    S+G+ + R++ A+I +  D  G++ P ++AP ++ ++ +   
Sbjct: 261 FEVKFQTAEQREEFAYTTSWGL-SSRIIGALIMTHGDDFGLMLPPNIAPIQVVIVPVGRK 319

Query: 358 DQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           +   R  +    + A L + G  V  DD  G   G ++   +L G P+++ +G + +   
Sbjct: 320 EDFARMVEEARTLAAELEREGIRVKVDDREGLTNGFKYNDWELKGVPVRIELGPRDLEAG 379

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++ +K+R +  +E +   + ++    R 
Sbjct: 380 QLVVKNRTSEDKETLGRVDAVSSMDARL 407


>gi|12045236|ref|NP_073047.1| threonyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351178|sp|P47615|SYT_MYCGE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3844963|gb|AAC71602.1| threonyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078630|gb|ABY79248.1| threonyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 564

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 155/446 (34%), Gaps = 46/446 (10%)

Query: 5   KYFLPILQEN----PRDAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           K    +++EN     +D      +L L +   +I     G+  WL  G    + +   + 
Sbjct: 151 KELEQLIKENEERLKKDHRSLGKQLELFSFDPLI---GAGLPIWLAKGTTLRNIIGNFVH 207

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +Q   G   +  P L + +L+  SG Y  Y ++M      + +AM+  P        IF
Sbjct: 208 HQQLLFGFNTVCSPVLANIELFKISGHYQHYKEDMFPAIKLDSQAMMLRPMTCPHHCLIF 267

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SY+ +P  F +  +  R E      G+ R R   + D + F    +  K      
Sbjct: 268 KQKRYSYKKMPQRFSEDSILHRFEASGGLIGLERVRCMTLLDNHIF-CRADQIKSEIKNA 326

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F    ++  + G     +                 L D      F     +     S+  
Sbjct: 327 FNLIQKVNKKFGFIFDRIDLS--------------LHDPKNQSKFIDNPGLWRESESQME 372

Query: 238 D-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           +   D+           A Y    D   + +F      K ++   I++   F    K+  
Sbjct: 373 NVLKDLNIQYQKEIGAAAFYGPKIDFQFKTIF-----KKMITIATIQL--DFLLPEKF-- 423

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               T+           +   GI     R +AA++E +  G   +W   +AP +  +I +
Sbjct: 424 --DLTYIDKKNTLKKPVIIHVGIIGTYERFIAALLEKTS-GNFPLW---LAPVQAVIIPV 477

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD- 413
               Q    A +K+Y +L K    V  DD  +++  +   A +   PLQ+IVG K + + 
Sbjct: 478 NI--QKHLKAAKKLYNKLLKENIRVNLDDNQDRLAKKVRQAIIEKIPLQLIVGDKEIENL 535

Query: 414 SKVEIKHRLTGIREDMSLEEVINYAS 439
            K+  +         +S    +    
Sbjct: 536 EKLTCRGFKGEKITRISFNNFVKRVR 561


>gi|196247599|ref|ZP_03146301.1| Anticodon-binding domain protein [Geobacillus sp. G11MC16]
 gi|196212383|gb|EDY07140.1| Anticodon-binding domain protein [Geobacillus sp. G11MC16]
          Length = 298

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/248 (33%), Positives = 123/248 (49%), Gaps = 15/248 (6%)

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             GPIG  +S E  ++AD     +          +   N +      +N   +   + YA
Sbjct: 63  SLGPIG--VSEEVTIIADHAVAAIVNG-------VCGANEEGYHYTGVNPDRDFAVSQYA 113

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   +  D  P+        RGIEVGH+F  GTKYS  M+A +   +G+   + MG
Sbjct: 114 ---DLRFVQEGDPSPDGNGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENGRTQTMIMG 170

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+VAA+ E   D  G++WP SVAPF + L+   A     R   E+ Y +L + 
Sbjct: 171 CYGIGVSRLVAAIAEQFADENGLVWPVSVAPFHVHLLTANAKSDEQRMLAEEWYEKLGQA 230

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G +FA +DL+G PL+V VG +  S+  VE+K R TG   D+ + E+I
Sbjct: 231 GFDVLYDDRPERAGVKFADSDLIGIPLRVTVGKR-ASEGVVEVKVRKTGETFDVPVGELI 289

Query: 436 NYASHRFS 443
                   
Sbjct: 290 ETVRRLLQ 297


>gi|325663708|ref|ZP_08152112.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470201|gb|EGC73434.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 492

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 145/424 (34%), Gaps = 69/424 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S KG     P G    +N+   +      TG   + +P      L   E 
Sbjct: 39  VKKAELIDYTSVKGCMVIKPAGYAIWENIQHELDRRFKETGVENVYLPMFIPESLLQKEK 98

Query: 84  GRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +         + +   PT E +  D +   I+S+R+LP  + Q     
Sbjct: 99  DHVEGFAPEVAWVTHGGLEPLQERLCVRPTSETLFCDFYAKDIQSHRDLPKVYNQWCSVV 158

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAE 198
           R E +     +RSREFL ++ ++   T E ++     M   Y       L +  I     
Sbjct: 159 RWE-KTTRPFLRSREFLWQEGHTAHATAEEAEERTIMMLNVYADFCEEVLAIPVIK---- 213

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               G     E    A+              + I S   D   + S  S         A 
Sbjct: 214 ----GRKTDKEKFAGAEAT------------YTIESLMHDGKALQSGTSHNFGDGFAKA- 256

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                                          FG +Y+          + K  YV   S+G
Sbjct: 257 -------------------------------FGIQYT--------DKENKLQYVHQTSWG 277

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +   R++ A+I    D  G++ P  +AP ++ +I I+       D   ++   L K G  
Sbjct: 278 MT-TRMIGAIIMVHGDNSGLVLPPRIAPVQVMVIPIQQKKDGVLDKAYEVKEVLKKAGLS 336

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  +  G +F+  ++ G P+++ +G K +      +  R T  +  +  EE+    
Sbjct: 337 VKVDDSDKSPGWKFSEQEMRGIPVRIELGPKDIEAGHAVVVRRDTREKIIVPFEELETKV 396

Query: 439 SHRF 442
           +   
Sbjct: 397 AEVL 400


>gi|189217492|ref|NP_001121216.1| hypothetical protein LOC100158287 [Xenopus laevis]
 gi|169642429|gb|AAI60714.1| LOC100158287 protein [Xenopus laevis]
          Length = 655

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/467 (16%), Positives = 150/467 (32%), Gaps = 84/467 (17%)

Query: 4   SKYFLPILQENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREE 60
           SK    +  E  ++  +     +++ ++ MI  +   G Y   P      + +     +E
Sbjct: 151 SKKQTRLGLEAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKE 210

Query: 61  QNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMT 115
             + G      P   S A L  E      +  E+  +         + +   PT E VM 
Sbjct: 211 IKKLGVENCYFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMY 270

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             +   ++S+R+LP    Q     R E +     +R+REFL ++ ++   T E       
Sbjct: 271 PAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATYE------- 323

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
               +   +   L L    +  +   I                             +   
Sbjct: 324 ---EAAEEVLQILDL-YARVYEDLLAI---------------------------PVVKGR 352

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            T+ +     +          A                    S+R I+     + G  +S
Sbjct: 353 KTEKEKFAGGDYTTTVEAFISA--------------------SSRAIQGATSHHLGQNFS 392

Query: 296 LPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 F+     G   Y    S+G+ + R + A++    D  G++ P  VA  ++ +I 
Sbjct: 393 KIFEIVFEDPKTPGLKQYAYQNSWGL-STRTIGAMVMVHADNIGMVLPPRVACVQVVIIP 451

Query: 354 ---IKAHDQVCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVI 405
                   +  +DA    C++   RL         D       G +F   +L G P+++ 
Sbjct: 452 CGITNTLSEEDKDALLKKCDQYLKRLLNADVRARADLRDNYSPGWKFNHWELKGVPIRLE 511

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMS-------LEEVINYASHRFSNN 445
           VG + + + +     R  G ++ +        L+E++        N 
Sbjct: 512 VGPRDMKNKQFVAVRRDNGEKQTIPEGQAETRLKEILEEIHTNLYNR 558


>gi|225464551|ref|XP_002272741.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 547

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 146/462 (31%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +   +AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 73  RSQDFNAWYLDVIANAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 122

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 123 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHM 182

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP    Q     R E       MR++ F+    + +              
Sbjct: 183 FTQWIHSYRDLPLMINQWANVTRWE-------MRTKPFVRTLEFLWQ------------- 222

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                         H      +  E +                 
Sbjct: 223 ----------------------------EGHTAHATPEEAEKEALQM------------I 242

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D     +             +  +     +     E      + ++ G     G  +S  
Sbjct: 243 DVYTKFAYEQAAIPVITGRKSKVETFAGAVRTYTIEAMMGDRKALQAGTSHNLGQNFSRA 302

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
               F   +G+  ++   S+ + + R +  +I +  D  G++ P  +AP ++ +I I K 
Sbjct: 303 FGTQFTDENGQRQHIWQTSWAV-STRFIGGIIMTHGDDAGLMLPPKIAPIQVVIIPIWKK 361

Query: 357 HDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
            D+     +A   +   L      V  DD  ++  G +F   ++ G PL++ +G + VS 
Sbjct: 362 ADEKTGVLNAASSVTEVLKSANIKVKVDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSS 421

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
             V I  R      G    +S+E   ++ Y   +    +  L
Sbjct: 422 GSVVISRRDVPGKQGKVFGISMEPSILVAYVKDKLDEIQSSL 463


>gi|212531825|ref|XP_002146069.1| threonyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210071433|gb|EEA25522.1| threonyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 541

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 141/439 (32%), Gaps = 71/439 (16%)

Query: 21  ASHKLMLRTGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           A H+++     +     +S G   +LP G   ++ +   +R +  + G  E+  P +   
Sbjct: 72  ADHRILGTAQELFTSSPYSPGSPLFLPNGTHIINKLIGFLRAQYRQYGFREVLTPNIYKK 131

Query: 78  DLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            LW  SG + +Y  +M  +  R            D+     P +      +F+S   SYR
Sbjct: 132 SLWEISGHWQNYKDDMYEVRGRGATGETEGELGEDEQYGLKPMNCPGHCLLFKSQNHSYR 191

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  +       R+E+     G+ R R F   D + F   P+      +        + 
Sbjct: 192 DLPVRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGKEIDLALTFVNMVM 250

Query: 186 HRLGLKSIPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              GL    +   + P      S E    A+    Q              +         
Sbjct: 251 KTFGLPKYNLVLSTRPEKDFIGSLELWDSAEEQLRQALDKSGLPWELNEGDG-------- 302

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      + +L DS  +  ++S   +++     F  +Y +        
Sbjct: 303 ------------AFYGPKIDIQLQDSDGKYHQLSTIQLDLNLPQRFELEYQVAEGEPDYD 350

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            +  GK   V +     G++    A++   + G    WP  ++P +  ++ +   D+   
Sbjct: 351 PNTPGKATPVLIHRAIFGSLERFLALLIERYAG---RWPFWLSPRQGIILTV-QSDEPVL 406

Query: 363 DACEKIYARLSKVGCDVF--------------------------WDDMGEQIGSQFAVAD 396
              E+  A+ S  G D                             D     +  +   A 
Sbjct: 407 RLAEEAAAKFS--GYDTIIPRLHSEDAELQQPAPLTSEPTFLIDIDSSSRSLSKKIQRAK 464

Query: 397 LLGFPLQVIVGSKFVSDSK 415
            + + L  +VGSK ++D  
Sbjct: 465 SMKYNLIFVVGSKNLADKT 483


>gi|218295277|ref|ZP_03496113.1| prolyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218244480|gb|EED11005.1| prolyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 477

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 152/448 (33%), Gaps = 84/448 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L ++Q+    AE+A +  +           G     P G    +N+   + +   
Sbjct: 14  FSEWYLEVIQK----AELADYGPVR----------GTIVLRPYGYAIWENIQKTLDQMFK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P       L  E+   + +  E+  +     +  ++ +   PT E V+  +
Sbjct: 60  ETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYM 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E       +R+R FL    +   L  EG        
Sbjct: 120 WSKWIQSYRDLPQLLNQWGNVVRWE-------LRTRPFLRTSEF---LWQEG-------- 161

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                         H      +  E +V                
Sbjct: 162 ------------------------------HTAHATREEAEAEVRRMLGIYAKLA----R 187

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D+  I  +  +  +      A      E              + ++ G   Y G  ++  
Sbjct: 188 DYAAIPVIEGLKTEKEKFAGAVYTTTIEA--------MMRDGKALQSGTSHYLGENFARA 239

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  D +  YV   S+G+ + R + A++ +  D KG+I P  +AP ++ ++ I   
Sbjct: 240 FDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIVMTHGDDKGLILPPRLAPIQVVIVPIYRE 298

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           +  +   +A   +   L   G     DD  +   G +F   +L G P +V +G K +   
Sbjct: 299 ENREKVLEAAFALKKDLLARGLRAHLDDRDQYTPGYKFHEWELKGVPYRVELGPKDLEVG 358

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  +  RL G +E + L  +      R 
Sbjct: 359 QAVLASRLGG-KETLPLAALPEALPERL 385


>gi|297202644|ref|ZP_06920041.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197713219|gb|EDY57253.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 471

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 147/449 (32%), Gaps = 77/449 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F    Q+    AE+A +  +  T +I           P G    + + A +      TG 
Sbjct: 14  FPRWYQDLITKAELADNGPVRGTMVIR----------PYGYGLWERMQAEMDARIKETGT 63

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSH 121
                P L     L  E+   + +  E+  +        ++  +  PT E ++ D F   
Sbjct: 64  QNAYFPLLIPQSYLTREADHVEGFAPELAVVTHGGGKELEEPAVVRPTSEMIINDYFSKW 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R ELRPR        FL    + +                  
Sbjct: 124 VQSYRDLPLLINQWANVVRWELRPRL-------FLRTTEFLWQ----------------- 159

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                      E      T E     +             DF  
Sbjct: 160 ---------------------------EGHTAHATQEDARAFASHIHRQVYE----DFMT 188

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +    +V          +   N    + +  +     + +++      G  ++   + +
Sbjct: 189 NVLAMDVVPGRKTVKERFAGAINTLTLEGMMGDG----KALQMATSHELGQNFAKAFNTS 244

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   DG    V   S+G    R++ A++    D  G+  P  +A  ++ ++ IK  D+  
Sbjct: 245 YLSKDGTQELVWQTSWG-STTRMIGALVMMHGDDNGLRVPPRLAQTQVVVLAIK-GDEQV 302

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 I  RL   G  V  DD  +   G +    +L G P++V VG + +      +  
Sbjct: 303 LAKVRDIGDRLKAAGLRVHVDDRTDTPFGRRAVDWELKGVPVRVEVGPRDLESGTAMVAR 362

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R+ G +E +++++++         ++ +L
Sbjct: 363 RIPGGKEAVAVDDLVRLLRAVLEEDQALL 391


>gi|330834227|ref|YP_004408955.1| prolyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566366|gb|AEB94471.1| prolyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 480

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 161/449 (35%), Gaps = 78/449 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S  F         +AEI  +             KG   W+P G K   NV ++IR+  
Sbjct: 7   KWSSNFSEWFDWVISEAEIYDYG--------RYPIKGAGVWMPYGFKIRHNVISLIRKLL 58

Query: 62  NRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTD 116
           + TG  E+  P L   +L   ES     + KE+  +    ++         PT E  +T 
Sbjct: 59  DETGHEEILFPLLIPEELLKKESEHIRGFEKEVFWVTQGGEEKLETRFALRPTSEVAITL 118

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    I+ Y  LP  FYQI   FR E +    ++R RE                      
Sbjct: 119 MESLWIRGYSQLPRKFYQIVSVFRYETKATRPLIRVRELT-------------------- 158

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                   F                       E   + +T E      K+ ++       
Sbjct: 159 -------TFK----------------------EAHTIHETYEDAAKQVKEAVEIYSK--- 186

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             F DI+ +  ++ +           +   L   +P+      R +++G   + G  ++ 
Sbjct: 187 --FFDILGIPYLISKRPDWDKFAGAEYTIALDTLMPDG-----RALQIGTAHHLGQHFTK 239

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M    + ADG   Y    SYGI + RV+A VI  + D  G +    +AP +  +I I  
Sbjct: 240 AMDYKIQRADGTLTYPHQTSYGI-SDRVIATVISINGDDHGPVLSPVIAPIEAVIIPIPG 298

Query: 357 HDQ----VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFV 411
             +          E++ + L+  G     D    +  G +F + +L G P++V  G + +
Sbjct: 299 KSEEDTKKVFSYAEEVRSTLASNGIRAVMDSSEDKTPGEKFYIWELKGVPIRVETGVREM 358

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +   V +K R T   + +  E+++    +
Sbjct: 359 NSGSVYLKRRDTLEGKVVKREDLVKELKN 387


>gi|120437069|ref|YP_862755.1| prolyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|152112923|sp|A0M4Z3|SYP_GRAFK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117579219|emb|CAL67688.1| prolyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 492

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 156/452 (34%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A +      TG      P      L+ 
Sbjct: 17  NELVVKADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKHLFE 76

Query: 82  ESG--------------RY------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                             Y      D  GK M+    + ++ ++  PT E ++ + +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKNDPDKPGKLMVDPDAKLEEELVVRPTSEAIIWNTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R         F  T E             
Sbjct: 137 IQSYRDLPIKVNQWANVVRWE-------MRTR--------LFLRTAEFLWQE-------- 173

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                           A   + +     + M+        +F  
Sbjct: 174 -----------------------------GHTAHATKDEALEETELMNNIYAEFAENFMA 204

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +  +     +      A      E L            + ++ G   + G  ++      
Sbjct: 205 MPVVKGSKTESERFAGALETYCIEAL--------MQDGKALQAGTSHFLGQNFAEAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV- 360
           F   +G   +V   S+G+ + R++ A+I +  D  G++ P ++AP ++ ++ I   ++  
Sbjct: 257 FATKEGGLEHVWATSWGV-STRLMGALIMTHSDDNGLVLPPNLAPIQVVIVPIYRSEEQL 315

Query: 361 --CRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   ++   L  VG  V +D+   ++ G +FA  +L G PL++ +G K +    VE
Sbjct: 316 DQISEVANELVKELRAVGVSVKFDNNDNQKPGWKFAQYELQGVPLRLAIGPKDLEKGTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E ++  EV+       +  +  L
Sbjct: 376 LARRDTLTKEFVNRSEVVEKIKALMTEIQDSL 407


>gi|147776717|emb|CAN76962.1| hypothetical protein VITISV_029502 [Vitis vinifera]
          Length = 599

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 144/462 (31%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +   +AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 73  RSQDFNAWYLDVIANAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 122

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 123 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHM 182

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP    Q     R E       MR++ F+    + +              
Sbjct: 183 FTQWIHSYRDLPLMINQWANVTRWE-------MRTKPFVRTLEFLWQ------------- 222

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                         H      +  E +                 
Sbjct: 223 ----------------------------EGHTAHATPEEAEKEALQM------------I 242

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D     +             +  +           E      + ++ G     G  +S  
Sbjct: 243 DVYTKFAYEQAAIPVITGRKSKVETFAGAXRTYTIEAMMGDRKALQAGTSHNLGQNFSRA 302

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KA 356
               F   +G+  ++   S+   + R +  +I +  D  G++ P  +AP ++ +I I K 
Sbjct: 303 FGTQFTDENGQRQHIWQTSWA-XSTRFIGGIIMTHGDDAGLMLPPKIAPIQVVIIPIWKK 361

Query: 357 HDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
            D+     +A   +   L      V  DD  ++  G +F   ++ G PL++ +G + VS 
Sbjct: 362 ADEKTGVLNAASSVTEVLKSANIKVKVDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSS 421

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
             V I  R      G    +S+E   ++ Y   +    +  L
Sbjct: 422 GSVVISRRDVPGKQGKVFGISMEPSILVAYVKDKLDEIQSSL 463


>gi|163755863|ref|ZP_02162980.1| prolyl-tRNA synthetase [Kordia algicida OT-1]
 gi|161324034|gb|EDP95366.1| prolyl-tRNA synthetase [Kordia algicida OT-1]
          Length = 492

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 155/452 (34%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A + +    TG      P      L+ 
Sbjct: 17  NELVVKADLAENSAVRGCMVIKPYGYAIWEKMQAQLDKMFKETGHENAYFPLFVPKSLFE 76

Query: 82  ESG--------------RY------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                             Y      D  GK M+    + ++ +I  PT E ++ + +++ 
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDPDKEGKLMVDPNAKLEEELIVRPTSEAIIWNTYKNW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E       MR+R FL    +   L  EG            
Sbjct: 137 IQSYRDLPILINQWANVVRWE-------MRTRLFLRTAEF---LWQEG------------ 174

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                                           A   + +       M         DF  
Sbjct: 175 ------------------------------HTAHATKDEAVAESLQMQKVYAEFAEDFMA 204

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +  +     +      A      E L            + ++ G   + G  ++      
Sbjct: 205 MPVVKGAKTESERFAGALDTYTIEAL--------MQDGKALQAGTSHFLGQNFAEAFDVK 256

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   +GK   V   S+G+ + R++  +I +  D  G++ P  +AP ++  + I  +++  
Sbjct: 257 YATKEGKQELVWATSWGV-STRLMGGLIMTHSDDAGLVLPPKLAPIQVVFVPIYKNEEQF 315

Query: 362 RDACEKIYA---RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +K+      L   G  + +D     + G++FA  +L G PL++ +G++ + +  +E
Sbjct: 316 EAIAKKVTEISNELKAKGVSIKFDKRDTLRPGAKFAEWELKGVPLRIALGARDLENGTLE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           I  R T  ++ ++ E+ +          +  L
Sbjct: 376 IARRDTFEKQSVAQEDAVATVVSLLETIQEDL 407


>gi|291549825|emb|CBL26087.1| prolyl-tRNA synthetase, family I [Ruminococcus torques L2-14]
          Length = 478

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 140/415 (33%), Gaps = 66/415 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    +N+   +      TG   + +P +    L   E    + +  E+  
Sbjct: 36  KGCMNYLPNGYALWENIQKNLDARFKETGVENVYLPVMIPESLLQKEKDHIEGFAPEVAW 95

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +   +     PT E +  D++   ++SYR+LP  + Q     R E         
Sbjct: 96  VTHGGLEELQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWEKT------- 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL                                                  S EF+
Sbjct: 149 TRPFLR-------------------------------------------------SREFL 159

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E     +          +        + + +     +     S+          
Sbjct: 160 WQ----EGHTIHATYEEAEERTKQMWRVYRDFAQDVLAIPVVSGRKTESEKFAGAQDTYT 215

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++     +FG+ +       +   + + H V   S+G+ + R++ A+I  
Sbjct: 216 IEALMHDGKALQSATSHFFGSSFPSAFGIQYSDKNNELHEVYETSWGL-STRIIGALIMV 274

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  +AP +  +I I  H +   D   ++   L   G  V  DD  +  G +
Sbjct: 275 HGDDSGLVIPPRIAPVQTMIIPIAQHKEGVLDKANELVDTLKAAGYKVKIDDSDKAPGWK 334

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F+  ++LG P ++ +G K + +++  I  R T  +  +SL+E+    +      +
Sbjct: 335 FSGQEILGIPTRIEIGPKDIENNQAVIVRRDTREKIVVSLDELTTKLAEVLETMQ 389


>gi|322382352|ref|ZP_08056259.1| prolyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153705|gb|EFX46080.1| prolyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 481

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 154/449 (34%), Gaps = 82/449 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ ++++    A++ S+  +           G   + P G +  +N   I+ +   
Sbjct: 18  FSQWYIDVIKK----ADLMSYSPVR----------GCMVFKPDGYEIWENCQRILDDMFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E    + +  E+  + +    + ++ +   PT E ++  +
Sbjct: 64  ETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLAVRPTSETMVGHM 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I SYR+LP    Q     R E        R+  FL    + +              
Sbjct: 124 YAEWINSYRDLPLLINQWANVVRWEK-------RTLPFLRTSEFLWQE------------ 164

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G  +HE        E         M     +   
Sbjct: 165 --------------------------GHTAHED-------EADARKETMQMLEIYRTFVE 191

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D+  I  +            A      E              + ++ G   Y GT ++  
Sbjct: 192 DYLAIPVITGQKTPSEKFAGAIDTYSIEA--------MMKDGKAVQAGTSHYLGTNFAEA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F   + +  +V   S+G+ + R++ A+I +  D +G++ P  VAP ++ +I I   
Sbjct: 244 FDIKFLNRENQHEFVHTTSWGV-STRLIGAMIMAHGDDRGLVMPPKVAPTQVIMIPIGPA 302

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      ++   + K G  V  D   +  G +F   ++ G P++V +G + + + +
Sbjct: 303 KTRDQVLAKTYELQTEIKKAGFRVRVDAREQSPGWKFNEYEMRGVPVRVELGPRDMENGQ 362

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V +  R+TG ++ ++ + ++   +     
Sbjct: 363 VILVSRVTGEKKVVAQDNLVEEITRLLDE 391


>gi|313905495|ref|ZP_07838859.1| prolyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313469679|gb|EFR65017.1| prolyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 479

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 154/423 (36%), Gaps = 67/423 (15%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ++  +I   S KG  +  P G    +N+   + E    TG   + +P L   +L  +   
Sbjct: 27  IKADLIGYTSVKGCMAIKPAGYAIWENIQHNLDERFKATGVKNVYMPMLIPENLLNKEAE 86

Query: 86  Y-DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +     ++  + +   PT E +  D +   I+SY++LP  + Q     R
Sbjct: 87  LVNGFAPEVAWVTHGGAEKLQERLCIRPTSETLFCDFYAKDIQSYKDLPKVYNQWCSVLR 146

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +     +RSREFL ++ ++   T E ++    +M   Y          +IP+     
Sbjct: 147 WE-KTTRPFLRSREFLWQEGHTAHATAEEAEERTVQMLNVYADFLE--NDLAIPV----- 198

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                      V     E + F                     +              + 
Sbjct: 199 -----------VKGQKTEKEKFAGA----------------KHTYTVEALMHDGKALQSG 231

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             HN     +   + + + +   + H+                            S+G+ 
Sbjct: 232 TSHNFDDIFAQAYDVQYTDKDNTLKHVHQ-------------------------TSWGM- 265

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             RV+ A+I    D  G++ P  +AP ++ +I I+   +   D   +I  +L+  G  V 
Sbjct: 266 TTRVIGAMIMVHGDNSGLVLPPHIAPTQVMIIPIRQDAEGVLDKAVEIKEKLATAGIRVD 325

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  ++ G +F+  ++ G P++V +G K V +    +  R T  +  +S++E+    + 
Sbjct: 326 LDDTDKRPGWKFSEQEMRGIPVRVELGPKDVENGSAVLVRRDTREKLVVSIDEIAEKTAE 385

Query: 441 RFS 443
              
Sbjct: 386 LLE 388


>gi|117164481|emb|CAJ88027.1| putative threonyl tRNA synthetase [Streptomyces ambofaciens ATCC
           23877]
          Length = 411

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 145/429 (33%), Gaps = 44/429 (10%)

Query: 22  SHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R  G+         G+  WLP G     ++   IR  + R G   +  P L   
Sbjct: 6   DHRKLGRELGLFDTDPLIGAGLPYWLPDGAAVRYSLEEYIRAAERRAGYRHVYSPVLGKR 65

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +L+  SG +  Y  +M    D   + ++  P+       I+RS   SYR LP    ++  
Sbjct: 66  ELYEISGHWAHYSDDMFPPMDLGGEQVVLRPSLCPHHAVIYRSRSHSYRELPLRMAELGG 125

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            +R EL     G+ R R   + DA+ F  T +              + +  LG+     R
Sbjct: 126 MYRSELSGVLGGLTRVRAIQLNDAHIF-CTLDQVAGEAQAALEMIRQAYEALGITPTRYR 184

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                               G    + +         +  TD  D        E      
Sbjct: 185 LSL----------------PGPGAKYVADPEKWQRSTALLTDVLDRSG--LPYEAAQGEA 226

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMG 315
           A      + ++ D       +S   ++                  + GAD GK   V + 
Sbjct: 227 AFYGPKIDVQVTDGAGRESTLSTVQVDFHQPER--------FDLHYIGADGGKHRPVMVH 278

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              IG++    A +   H G    W   +AP ++ ++ I   +     A  +  A L   
Sbjct: 279 RSIIGSVERAVAHLIEQHGGAFPAW---LAPTQLVVLPISDTEWPNAAALAERAAGL--- 332

Query: 376 GCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G        + G  +G++   A L   P Q ++G++  +D  V ++ R     +   + E
Sbjct: 333 GLRAEIAGPERG-SLGARVREARL--VPYQAVIGAREAADDHVALRLRDGRRIDPQPVGE 389

Query: 434 VINYASHRF 442
           V+ + S   
Sbjct: 390 VLPHISALI 398


>gi|258569006|ref|XP_002585247.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237906693|gb|EEP81094.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 598

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/229 (37%), Positives = 125/229 (54%), Gaps = 1/229 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +++P      +  +   ++L++R G I Q   GI+  LPLG +    +  +I +  
Sbjct: 12  RLSTFWVPTGGVAEKSKKKDGNELLVRAGFIRQAYSGIFHLLPLGLRVQQKLENLIDKHM 71

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA ++S+ +L S +LW  SGR  +   E+ R  DR   + +  PTHEE +T +  S 
Sbjct: 72  QSIGASKLSLSSLSSQELWKRSGRL-NDDSEIFRFNDRKGASFLLAPTHEEEITALVGSL 130

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSYR+LP   YQI  K+RDE RPR G++R REFLMKD Y+FD + E    +YN +   Y
Sbjct: 131 VKSYRDLPLRVYQITRKYRDEPRPRQGLLRGREFLMKDLYTFDYSAEKGLDTYNTVKEVY 190

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
            RIF  L L  +   A+SG +GGDLSHEF      GE  V    +    
Sbjct: 191 TRIFDDLRLPYLVAAADSGNMGGDLSHEFHFENPNGEDTVITCTNCSHA 239



 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 21/191 (10%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATF----------KGADGKD---HYVQMGSY 317
             E        IE+GH F+ GT+YS  + A            KG +G       ++MG +
Sbjct: 411 CGEGVLHPHTTIELGHTFHLGTRYSSALQANVAVDPTKLIGGKGPEGASSVLVPLEMGCH 470

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL---SK 374
           GIG  R+++AV     D KG+ WP  +APF   +   K  +Q      E++Y  L     
Sbjct: 471 GIGVSRMISAVATMLADHKGLKWPQVIAPFSAVICFGKGFEQD----AEQVYDALVSGQM 526

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEE 433
              D   DD       +   ADL+GFP+ +++G ++ S   VE++ R L   ++D+ L E
Sbjct: 527 SPIDAVLDDRSHTFPWKLKDADLIGFPVILVLGKQWRSSKLVEVQCRQLDNFKDDVPLNE 586

Query: 434 VINYASHRFSN 444
           + +  S   + 
Sbjct: 587 LPSVVSSLLAK 597


>gi|242774039|ref|XP_002478362.1| threonyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218721981|gb|EED21399.1| threonyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 532

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 146/435 (33%), Gaps = 71/435 (16%)

Query: 21  ASHKLMLRTGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           A H+++     +     +S G   +LP G   ++ +   +R +  + G  E+  P +   
Sbjct: 77  ADHRVLGTAQELFTSSSYSPGSPLFLPNGTHIINKLIGFLRAQYRQYGFREVLTPNIYKK 136

Query: 78  DLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            LW  SG + +Y  +M  +  R            D+     P +      +F+S   SYR
Sbjct: 137 SLWEISGHWQNYKDDMYEVRGRGATGETEGELGEDEQYGLKPMNCPGHCLLFKSQNHSYR 196

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  +       R+E+     G+ R R F   D + F   P+      +        + 
Sbjct: 197 DLPVRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPQQIGKEIDLALAFVNMVM 255

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL    +   + P                E     S +  D                
Sbjct: 256 KTFGLPKYTLVLSTRP----------------EKDFIGSLELWD-------------NKS 286

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E      A      + +L DS  +  ++S   +++     F  +Y +         
Sbjct: 287 GLPWELNEGDGAFYGPKIDIQLQDSDGKYHQLSTIQLDLNLPQRFELEYQVAEGEPDYNP 346

Query: 306 D--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +  GK   V +     G++    A++   + G    WP  ++P +  ++ +  +D+    
Sbjct: 347 NTPGKATPVLIHRAIFGSLERFLAILIELYAG---RWPFWLSPRQGIILTV-QNDEPVLR 402

Query: 364 ACEKIYARLSKVG-CDVF-------------------WDDMGEQIGSQFAVADLLGFPLQ 403
             E+  A++S     DV                     D     +  +   A  + + L 
Sbjct: 403 LAEEAAAKISGYRSIDVEATELLQPAPIASDPTFLIDVDSSSRSLSKKIQRAKSMKYNLI 462

Query: 404 VIVGSKFVSDSKVEI 418
            +VGSK ++D+ +++
Sbjct: 463 FVVGSKNLADNSIDV 477


>gi|218199143|gb|EEC81570.1| hypothetical protein OsI_25016 [Oryza sativa Indica Group]
          Length = 448

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 144/421 (34%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----D 98
           P G    + +   +  +   TG   M  P         +     + +  E+  +      
Sbjct: 5   PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 64

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 65  ELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQ 123

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E +     K  +  + ++                                 
Sbjct: 124 EGHTAHATLEEA----EKEAMQMIDVYT-------------------------------- 147

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              F  +      IP   +  +     N                                
Sbjct: 148 --KFAYEQAAIPVIPGRKSRVETFAGANRTYTIEAM---------------------MGD 184

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   + +  +V   S+ I + R V  +I +  D  G+
Sbjct: 185 RKALQAGTSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAGL 243

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P ++AP ++ ++ I K  D+     +A   +   L + G  V  DD   +  G +F  
Sbjct: 244 MLPPNIAPIQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNF 303

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPV 448
            ++ G P+++ +G + V++  V I  R      G    +S++   ++++   R    +  
Sbjct: 304 YEMKGVPIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQAS 363

Query: 449 L 449
           L
Sbjct: 364 L 364


>gi|254382003|ref|ZP_04997365.1| prolyl-tRNA synthetase 2 [Streptomyces sp. Mg1]
 gi|194340910|gb|EDX21876.1| prolyl-tRNA synthetase 2 [Streptomyces sp. Mg1]
          Length = 470

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/462 (17%), Positives = 157/462 (33%), Gaps = 85/462 (18%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P  ++ PR        AE+A +  +  T +I           P G    + +
Sbjct: 1   MAKAPVLTPQAEDFPRWYQDLINKAELADNGPVRGTMVIR----------PYGYGLWERM 50

Query: 54  NAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGP 108
              +       GA     P       L  E+   + +  E+  +        ++ ++  P
Sbjct: 51  QQEMDARIKDAGAQNAYFPLFIPQSYLTKEAEHVEGFAPELAVVTHGGGKELEEPVVVRP 110

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T E ++ D F   ++SYR+LP    Q     R E+RP       R FL            
Sbjct: 111 TSETIINDYFSKWVQSYRDLPLLINQWANVVRWEMRP-------RVFLRTS--------- 154

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                                                   EF  L   G T     +D  
Sbjct: 155 ----------------------------------------EF--LWQEGHTAHATYEDAR 172

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D+        + D ++    ++       A              E      + +++G   
Sbjct: 173 DYAARIHTDVYGDFMTNVLGIDVVLGRKTAKERFAGAIN-TLTLEGMMGDGKALQLGTSH 231

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GT ++   +  +   +GK   V   S+G+ + R+V  +I S  D  G+  P  +A  +
Sbjct: 232 ELGTNFAKAFNTQYLSKEGKQELVWQTSWGV-STRMVGGLIMSHGDDNGLRVPPRLAHVQ 290

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVG 407
           + ++ IK  + V +    ++ A+L   G  V  DD  +   G +    +L G P+++ +G
Sbjct: 291 VVVMAIKGDEAVAK--VRELGAQLKAAGLRVQVDDRVDTPFGRRAVDWELKGVPVRIEIG 348

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + + +    +  R+ G +E + +  +++        ++  L
Sbjct: 349 PRDLENGTAMLARRIPGGKEAVQISALLDLLPKVLDEDQAQL 390


>gi|297156878|gb|ADI06590.1| prolyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 471

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 152/462 (32%), Gaps = 84/462 (18%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P  ++ PR        AE+A +  +  T +I           P G    + +
Sbjct: 1   MAKAPVLTPQAEDFPRWYQDLINKAELADNGPVRGTMVIR----------PYGYGLWERM 50

Query: 54  NAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGP 108
              +       G      P       L  E+   + +  E+  +      + ++ ++  P
Sbjct: 51  QQDMDARIKAEGVQNAYFPLFIPQSYLTKEAEHVEGFAPELAIVTHGGGKKLEEPVVVRP 110

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T E ++ + F   ++SYR+LP    Q     R ELRPR        FL    + +     
Sbjct: 111 TSETIINEYFAKWVQSYRDLPLLINQWANVVRWELRPRL-------FLRTSEFLWQ-EGH 162

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +  +Y                 S   R               V AD  E  +       
Sbjct: 163 TAHATYEDARD----------FASRIHR--------------HVYADFMENVLAMDVVLG 198

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                       + ++L                                  + +++G   
Sbjct: 199 RKTAKERFAGAINTLTLEG---------------------------MMGDGKALQLGTSH 231

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G  ++   +  F   +GK   V   S+G    R+V A++    D  G+  P  +AP +
Sbjct: 232 ELGQNFARAFNTQFLSKEGKQELVWQTSWG-STTRMVGALVMMHGDDSGLRIPPRLAPVQ 290

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVG 407
             ++ IK  D+       +I  RL+  G  V  DD  +   G +    +L G P+++ VG
Sbjct: 291 AVVLAIK-GDEAVLAKVREIGDRLTAAGVRVQVDDRTDTPFGRRAVDWELKGVPVRIEVG 349

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + +      +  R+ G +E + LE + +        ++ +L
Sbjct: 350 PRDLEGGTAMVVRRIPGGKEPVRLEALPDLLPKVLEEDQALL 391


>gi|257389171|ref|YP_003178944.1| prolyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257171478|gb|ACV49237.1| prolyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 484

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 132/415 (31%), Gaps = 68/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E    + +  E+  +
Sbjct: 38  GFIVTRPRGYAIWEQIQTHLDGWFKDTGVQNAYFPMFIPESYLEREKDIVEGFDPEVAWV 97

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +  ++ +   PT E ++        +S+R+LP    Q     R E        R+
Sbjct: 98  THGGNEELEERLAVRPTSESIIAPFLAQWTRSHRDLPLRINQWCSVVRWEATETKPFFRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++     +                                    D   E + 
Sbjct: 158 KEFLWQEGHTAHRDED------------------------------------DAWEETMT 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  E            P+     + D     ++     T                   
Sbjct: 182 RLDQYE--KLYEDVLAMPPLKGRKPEHDKFPGAHTTTTVETL------------------ 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++     Y GT ++     T+   D ++      S+G+ + R + A+I + 
Sbjct: 222 ---MPDGKSVQAATSHYLGTSFAEAFDITYVDEDEEEETAHTTSWGL-SWRAMGALIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P ++AP ++ ++ I   D      +    + A L + G  V +DD   +  G
Sbjct: 278 SDDQGLVLPPTLAPKQVVVVPIWQEDTKDEVLEYAADVAAELDEAGVRVHFDDRDHRNPG 337

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++   +L G PL+V +G   V D ++ + HR  G     S + +          
Sbjct: 338 FKYNDWELKGVPLRVEIGPNEVEDEELTLSHRPDGESITESRDGLETTVRDHLDE 392


>gi|145353842|ref|XP_001421209.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581446|gb|ABO99502.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 448

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 140/402 (34%), Gaps = 74/402 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----D 98
           P G    + +   +  +   TG      P L        E+   + +  E+  +      
Sbjct: 5   PYGYAIWEGIQKYMDAKFKATGVQNAYFPQLIPYSFITKEASHVEGFAPELALVTRGGGK 64

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E ++ ++    I+SYR+LP    Q     R E+R R   +R+ EFL +
Sbjct: 65  ELEEPLVVRPTSETIVNNMLSQWIQSYRDLPMLLNQWCNVHRWEMRTR-PFIRTLEFLWQ 123

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +M   Y                                A+  +
Sbjct: 124 EGHTAHATAEEAEERAMQMIRVY--------------------------------AEFAQ 151

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           TQ           IP   +  +     N                                
Sbjct: 152 TQAAM------PVIPGRKSRVESFAGANVTYTIEAM---------------------MGD 184

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  ++     TF    G+  YV   S+G+ + R++  ++ +  D  G+
Sbjct: 185 KKALQAGTSHNLGDNFAKAFDTTFLDDKGETQYVHQSSWGV-STRLIGGILMTHGDDSGL 243

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAV 394
           I P  +AP ++ ++ I   D+       + + I + LS  G     D D  +  G +F  
Sbjct: 244 ILPPRLAPIQVVVVPIWKKDEEKEAVMASVDSIISSLSNAGVRTHLDADQSKSPGWKFNQ 303

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE 432
            ++ G P+++ VG K V+     +  R      G    +S+E
Sbjct: 304 YEMKGVPIRIEVGPKDVAKGACVVARRDVPGKEGKEFGVSIE 345


>gi|114572697|ref|XP_001172414.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 6 [Pan
            troglodytes]
          Length = 1519

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 141/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 1024 EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1083

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1084 YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1143

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1144 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1193

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1194 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1225

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1226 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1265

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1266 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1324

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL +V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1325 EDKEALIAKCNDYRRRLLRVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1384

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1385 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1419


>gi|302865885|ref|YP_003834522.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302568744|gb|ADL44946.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 468

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 149/453 (32%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ F    Q+    A++A +  +  T +I           P G    + + A +     
Sbjct: 8   RAEDFPRWYQDLIAKAKLADNGPVRGTMVIR----------PAGYAIWERMQAEMDARIK 57

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDI 117
             GA     P          E+   + +  E+  +         + ++  PT E V+ + 
Sbjct: 58  AAGAENAYFPLFIPESYLKREAEHVEGFSPELAVVTHGGGKQLAEPVVVRPTSETVIGEF 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SYR+LP    Q     R ELRPR   +R+ EFL +                   
Sbjct: 118 MAKWIDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQ------------------- 157

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E      T E     ++  +         
Sbjct: 158 -------------------------------EGHTAHATREDARAYARRILHEAYEDLMV 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +   I  +  +         AT+    E              + +++G     G  ++  
Sbjct: 187 NVLGIPVVVGLKTARERFAGATATYTCEG--------MMGDGKALQLGTSHELGQNFAKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              ++  A+G   +    S+G  + R++  +I    D  G+  P  +AP +  ++ +K  
Sbjct: 239 FDISYSSAEGGREHAWTTSWG-TSTRMLGGLIMCHGDDNGLRVPPKLAPVQAYVMIVKDG 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +A  K++  L   G  V  DD  +   G +   A+L G+P++V VG + ++    
Sbjct: 298 -EGVAEAARKLHDALRDAGVRVALDDRTDTAFGRRAVDAELRGYPVRVEVGPRDLAAGNA 356

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R  G +    + +V+         ++  L
Sbjct: 357 VVVRRTDGSKAPTPVADVVGAVLAALEADQQAL 389


>gi|114572699|ref|XP_001172425.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase isoform 7 [Pan
            troglodytes]
          Length = 1512

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 141/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 1017 EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1076

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1077 YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1136

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1137 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1186

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1187 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1218

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1219 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1258

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1259 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1317

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL +V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1318 EDKEALIAKCNDYRRRLLRVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1377

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1378 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1412


>gi|54020620|ref|YP_116116.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|53987793|gb|AAV27994.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 579

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 145/443 (32%), Gaps = 39/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      KL L T        G   WL  G +  + +   I E     G
Sbjct: 170 FLGILQERQERDHRKIGAKLKLFT-FSSYFGHGFPVWLENGMRIYNKIRQKILEFDRNYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P     +L+  SG    Y  +M +     ++ +I  P        +F   + SY
Sbjct: 229 FKEVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIPRPMTCPHHIILFSQQLFSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           RNLP+   +    +R E      G+ R R   + + + F ++        + +F     +
Sbjct: 289 RNLPYRISEQSRLYRYEKSGALLGLERVRAMDLTEGHIF-VSKSQIFSEISHLFQMISEV 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +                      + + F      D        D    + 
Sbjct: 348 LDFFKVQIFYISFSKRD-------------PKNKDKFFQDDQMWDQA----EADLKQFLE 390

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
            N I        AA      +    +    +           I      + LP     +F
Sbjct: 391 QNKINYIEKIGEAAFYGPKIDFQVKTALNKEL---------TISTLQLDFLLPKKFKISF 441

Query: 303 KGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                K     +   G IG      A++     G    W   ++P +I +I +    +  
Sbjct: 442 INEHNKKETPILIHRGLIGTYERFIALLLEQSKGNLPFW---ISPKQIIVIPVA---EKH 495

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +KI+  L  +G +   D   E+I  +   A+L     QVI+G + ++ +++  +  
Sbjct: 496 NDFAQKIHKILFDLGFNSEIDLRSERISRKIREANLEKINFQVIIGDEEITKNEITYRKF 555

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            +     +SL + ++       N
Sbjct: 556 GSPELFRISLVDFVDLLKSSEKN 578


>gi|213024165|ref|ZP_03338612.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 194

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/166 (56%), Positives = 123/166 (74%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           REE N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+
Sbjct: 1   REEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDL 60

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R+ + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M
Sbjct: 61  VRNELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAM 120

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           + +Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  
Sbjct: 121 YAAYSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF 166


>gi|297844762|ref|XP_002890262.1| hypothetical protein ARALYDRAFT_889225 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336104|gb|EFH66521.1| hypothetical protein ARALYDRAFT_889225 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 620

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 157/454 (34%), Gaps = 59/454 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ K +L  ++E    A+I  H+L          H  S G   +LP G +  + +    +
Sbjct: 213 KQLKDYLKSIEE----AKIYDHRLSGQQQELFFSHPLSPGNCIYLPHGTRVYNKLMEFFK 268

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-------LADRNDKAMIYGPTHE 111
           +E  + G  E+  P + + D W  S   + Y K M +       L   ++        + 
Sbjct: 269 KEYWKMGYTEVITPVIYTMDFWETSRHAEYYQKNMFKLDFQTPGLTVIHN--YGIKHMNC 326

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGS 170
           +    +FR  +     LP         +++E      G+ R R+F   DA+ F  +    
Sbjct: 327 QGHCLMFRHSV----QLPIKLADFGPLYQNEASEDLSGLTRVRQFQQDDAHIF-CSETQV 381

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           K     +       + + G     ++  + P       E    A+    +          
Sbjct: 382 KEEVRGILDFVDYAYTKFGFTY-ELKLSTRPKKYLGDLEKWDKAEKDLEEALNDFGKTWV 440

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
               +   +   I                    +  ++D++    + +   ++    F+ 
Sbjct: 441 KNKGDGEFYGPKI--------------------DITVYDAMKRKFQCATIQLD----FHL 476

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++ L  SA  +     +  V +    +G++  + A++   + GK   W   ++P +  
Sbjct: 477 PDRFKLEYSA--EDETEIESSVLIHRAVLGSVERLFAILLEQYKGKLPFW---LSPRQAI 531

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           + ++    +  R    K+  ++ + G  V  D     +  +   A +  +   + VG + 
Sbjct: 532 VCSV---SEDSRSYANKVRDQIHEAGYYVDVDTTDRTVSEKVQEAQVAQYNYILAVGDEE 588

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               +V +  R     E MS E +++    + +N
Sbjct: 589 ARTGQVTVWLRD----EMMSFETLLDEFKLKTAN 618


>gi|251797403|ref|YP_003012134.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545029|gb|ACT02048.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 482

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/452 (15%), Positives = 154/452 (34%), Gaps = 83/452 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ ++++    AE+  +  +           G   + P G +  +N+   +     
Sbjct: 18  FSRWYIDVIKK----AELMDYSPVR----------GCIVFRPEGYELWENIQRDLDRRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E    + +  E+  + +    + ++ +   PT E +   +
Sbjct: 64  ETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAAGEKLEERLAIRPTSETMFGHM 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E        R+  FL    + +              
Sbjct: 124 YAKWIQSYRDLPLLINQWANVVRWEK-------RTLPFLRTSEFLWQE------------ 164

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G  +HE        E +       M         
Sbjct: 165 --------------------------GHTAHE-------TEDEAREETMRMLTVYREFVE 191

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +F  I  +            A +    E              + ++ G   Y GTK+++ 
Sbjct: 192 EFLAIPVIEGEKTPSERFAGAVNTYSIEA--------MMKDGKAVQAGTSHYLGTKFAVA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   +    +    S+G+ + R++ A+I    D +G+  P  VAP ++ +I I   
Sbjct: 244 FDIKYLDRENTLQFAHTTSWGV-STRLIGAMIMVHGDDRGLALPPKVAPTQVIMIPIGPA 302

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                     +++YA L K G  V  DD      G +F   ++ G PL++ +G + + + 
Sbjct: 303 KTRDQVVGRVDELYAELKKAGVRVKVDDRSDVSPGWKFNEYEMRGVPLRLELGPRDMENG 362

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +V +  R++G +  +  + ++       ++ +
Sbjct: 363 QVVLASRVSGEKRIVRQDNLLAEVETMLADIQ 394


>gi|258647248|ref|ZP_05734717.1| proline--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260852895|gb|EEX72764.1| proline--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 494

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 152/448 (33%), Gaps = 85/448 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+++  +  Q   +G     P G    + +   +       G   +  P L       
Sbjct: 20  NELVVKAELAEQSDVRGCMVIKPYGYAIWERIQQSMDARFKDVGVQNVYFPLLIPKSFLS 79

Query: 81  VESGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHI 122
            E+   + + KE   +                    + D+ +I  PT E +  + +R  I
Sbjct: 80  KEAEHVEGFAKECAVVTHYRLKTNAEKTGVVVDPEAKLDEELIIRPTSETMFWNTYRKWI 139

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            S+R+LP    Q     R E       MR+R         F  T E              
Sbjct: 140 HSWRDLPVICNQWCNVMRWE-------MRTR--------LFLRTSEFLWQE--------- 175

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                G  +H     AD    Q+                D    
Sbjct: 176 ---------------------GHTAHATREEADQRARQML---------------DVYAD 199

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              N +         + ++     +     E      + ++ G   + G  ++      +
Sbjct: 200 CVENVMAVPVVRGMKSATERFAGAVQTYTIEAMMQDGKALQNGTSHFLGQNFAKAFGVQY 259

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--- 359
              D +  Y    S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +++   
Sbjct: 260 VDKDNQLQYPWATSFGV-STRMMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNNEELQ 318

Query: 360 VCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +  E I + L   G  V +D+   ++ G +FA  +L G P+++++G + + +  +E+
Sbjct: 319 KLDERLEAIASTLRGKGIRVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLQNGTIEL 378

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
             R T  +E + +E +  Y        +
Sbjct: 379 MRRDTLEKETLQVEGIEEYVEKLLEEIQ 406


>gi|229019013|ref|ZP_04175855.1| Prolyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228742341|gb|EEL92499.1| Prolyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 445

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG+ ++  +   +   +   +   ++     ++  +     +  +D+   +  D  P+  
Sbjct: 218 TGDIEII-ADHAVASIVNGCSGANEEGFHYVNVNPERDFKVSQYTDLRFIQEGDQSPDGN 276

Query: 276 RVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YGIG  R VAA+ E  +
Sbjct: 277 GTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCYGIGVSRTVAAIAEQFN 336

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G++WP +VAPF + +I +       R+  E IY  L + G +V  DD  E+ G +FA
Sbjct: 337 DENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYEVLLDDRAERAGVKFA 396

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y ++   
Sbjct: 397 DADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYIANILK 445



 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 70/109 (64%)

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +Y 
Sbjct: 2   KSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKAYS 61

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S       
Sbjct: 62  NIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDTSNYAA 110


>gi|297624797|ref|YP_003706231.1| prolyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165977|gb|ADI15688.1| prolyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 484

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 144/423 (34%), Gaps = 72/423 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   +  P L     +  E+   + +  E+  +
Sbjct: 37  GSIIVKPYGYAIWENIQRHLDAMFKATGHENLYFPLLIPTSFFEREADHVEGFSPELAVV 96

Query: 97  ADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   ++ +   PT E ++ + +   I+SYR+LP  + Q     R E       +R+
Sbjct: 97  THAGGKALEEPLAIRPTSETIIGEAYSKWIQSYRDLPLLYNQWCNVLRWE-------LRT 149

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R FL    + +                                             E   
Sbjct: 150 RPFLRTTEFLWQ--------------------------------------------EGHT 165

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T E  +  ++  ++        +F +      +      P    +   N    +++ 
Sbjct: 166 AHATAEEAMAETRQMLEIYA-----EFAERYGALPVFRGEKTPGERFAGAQNTYTIEAMM 220

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +     + ++ G   Y G  ++   + TF   + +  +V   S+G+ + R + A+I + 
Sbjct: 221 RDG----KALQAGTSHYMGDNFARAFNITFNDVNNQQAFVHTTSWGL-SWRFIGALIMTH 275

Query: 333 HDGKGIIWPDSVAPFKISLINI-----KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
            D KG+I P  +AP ++ ++ I      A          K++A L   G  V  DD  G 
Sbjct: 276 GDDKGLILPPPLAPHQVVVVPIYRADDDAARAAVLAEVGKLHAALKDAGVRVKVDDRQGM 335

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             G +F   +  G PL++ +G K +      +  RL+G +  + L  +           +
Sbjct: 336 SPGWKFNEWEQKGVPLRLELGPKDLEAGAALLADRLSGEKRPVKLANLAQTLPDELERFQ 395

Query: 447 PVL 449
             L
Sbjct: 396 AAL 398


>gi|119613716|gb|EAW93310.1| glutamyl-prolyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
          Length = 1522

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 140/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 1027 EAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1086

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1087 YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1146

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1147 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1196

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1197 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1228

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1229 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1268

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1269 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1327

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1328 EDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1387

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1388 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1422


>gi|47459403|ref|YP_016265.1| threonyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|47458733|gb|AAT28054.1| threonyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 579

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 150/435 (34%), Gaps = 36/435 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +L+E   RD    +  L L   M    S  G   WL  G K  + +   + E  +R 
Sbjct: 169 YLDLLKERKERDHRTIAKNLDLF--MFSPLSGLGFPIWLENGMKIKNAIMKTVLELDDRY 226

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    L+  SG +  Y  +M       ++ +I  P        IF S + S
Sbjct: 227 GFDEVHTPIVGEQKLYETSGHWAHYKDDMYPPIKVENENLILRPMTCPHHILIFNSRLYS 286

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +    FR E      G  R R   + + + F          +  ++     
Sbjct: 287 YRDLPKRFSEQSWLFRHEKSGALTGFERVRALQLTEGHIF-ARKSQIVDEFKHLYKMINE 345

Query: 184 IFHRLGLKSIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                G+K   +      P   +  ++   L +T E  +       +  +     ++ ++
Sbjct: 346 ALSIFGIKIDYVSFSRRDPKDKEKFYQDDKLWETAEKDL-------ETVLKELKIEYKEM 398

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           I   +           T   H             +S   ++    F    K+      ++
Sbjct: 399 IGEAAFYGPKIDFQVRTVLNHEI----------TMSTLQLD----FLLPEKF----DMSY 440

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  ++  V +    IG      +++   + G    W   +AP + ++  +  +D++ 
Sbjct: 441 VNENNEREKPVLIHRGLIGTYERFLSILLEQNKGVFPFW---LAPKQFAIAVVNPNDKMQ 497

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +Y  L      V++D+  E++  +   A +       ++G +      + I+  
Sbjct: 498 IEYADSVYKTLKSKKFHVYFDNRDERLSKKIREAQISKTKYIFVIGEEEAKTKTITIRAY 557

Query: 422 LTGIREDMSLEEVIN 436
                   ++E  + 
Sbjct: 558 GEESTTTSTIENFLK 572


>gi|74006040|ref|XP_858912.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 4
            [Canis familiaris]
          Length = 1465

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 139/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      +++      E  + G    
Sbjct: 970  EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1029

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1030 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1089

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E           +   +
Sbjct: 1090 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFE----------EAAEEV 1139

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                                  +      +    T+ +    
Sbjct: 1140 LQILDL----------------------------YAKVYEELLAIPVVKGRKTEKEKFAG 1171

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1172 GDYTTTIEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIIFED 1211

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      A  +
Sbjct: 1212 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVASVQVVVIPCGITNALSE 1270

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              RDA    C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1271 EDRDALIIKCNDYRRRLLSVNVRVKVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1330

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +  ++  E          +
Sbjct: 1331 QFVAVRRDTGEKLTVADNEAETKLKAILED 1360


>gi|62241042|ref|NP_004437.2| bifunctional aminoacyl-tRNA synthetase [Homo sapiens]
 gi|288558855|sp|P07814|SYEP_HUMAN RecName: Full=Bifunctional aminoacyl-tRNA synthetase; AltName:
            Full=Cell proliferation-inducing gene 32 protein;
            Includes: RecName: Full=Glutamyl-tRNA synthetase;
            AltName: Full=Glutamate--tRNA ligase; Short=GluRS;
            Includes: RecName: Full=Prolyl-tRNA synthetase; AltName:
            Full=Proline--tRNA ligase
 gi|116496781|gb|AAI26276.1| EPRS protein [Homo sapiens]
 gi|223460490|gb|AAI36466.1| Glutamyl-prolyl-tRNA synthetase [Homo sapiens]
          Length = 1512

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 140/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 1017 EAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1076

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1077 YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1136

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1137 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1186

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1187 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1218

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1219 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1258

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1259 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1317

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1318 EDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1377

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1378 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1412


>gi|315502429|ref|YP_004081316.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409048|gb|ADU07165.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 468

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 150/453 (33%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ F    Q+    A++A +  +  T +I           P G    + + A +     
Sbjct: 8   RAEDFPRWYQDLIAKAKLADNGPVRGTMVIR----------PAGYAIWERMQAEMDARIK 57

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDI 117
             GA     P          E+   + +  E+  +         + ++  PT E V+ + 
Sbjct: 58  AAGAENAYFPLFIPESYLKREAEHVEGFSPELAVVTHGGGKQLAEPVVVRPTSETVIGEF 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SYR+LP    Q     R ELRPR   +R+ EFL +                   
Sbjct: 118 MAKWIDSYRDLPLLLNQWANVVRWELRPRI-FLRTSEFLWQ------------------- 157

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E      T E     ++  +         
Sbjct: 158 -------------------------------EGHTAHATREDARAYARRILHEAYEDLMV 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +   I  +  +         AT+    E              + +++G     G  ++  
Sbjct: 187 NVLGIPVVVGLKTARERFAGATATYTCEG--------MMGDGKALQLGTSHELGQNFAKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              ++  A+G   +    S+G  + R++  +I    D  G+  P  +AP +  ++ +K  
Sbjct: 239 FDISYSSAEGGREHAWTTSWG-TSTRMLGGLIMCHGDDNGLRVPPKLAPVQAYVMIVKDG 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +A  K++  L   G  V  DD  +   G +   A+L G+P++V VG + ++    
Sbjct: 298 -EGVGEAARKLHDALRDAGVRVALDDRTDTAFGRRAVDAELRGYPVRVEVGPRDLAAGNA 356

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R  G +    + +V+        +++  L
Sbjct: 357 VVVRRTDGSKAPTPVADVVGAVLAALEDDQQAL 389


>gi|322696936|gb|EFY88721.1| putative threonine--tRNA ligase [Metarhizium acridum CQMa 102]
          Length = 491

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/468 (16%), Positives = 150/468 (32%), Gaps = 92/468 (19%)

Query: 13  ENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + P   E   H+ +       +   +S G   +LP G +  + +   IR++  R G  E+
Sbjct: 32  QKPEKREPPDHRKIGLQQELFITSAYSPGSPIFLPNGARIFNRLIDFIRKQYARYGFQEV 91

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA------------------------DRNDKAMI 105
             PT+    LW +SG  ++Y  +M  +                            D    
Sbjct: 92  ITPTIYKKALWAKSGHLENYADDMYTVTGNASTPGKDTGGCCGSDHGPVEPDSEADNEYG 151

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFD 164
             P +      IF S ++SYR LP  +       R+E+     G+ R R F   D + F 
Sbjct: 152 LKPMNCPGHCLIFASKVRSYRELPVRYADFSPLHRNEVSGALSGLTRVRRFHQDDGHIF- 210

Query: 165 LTPEGSKHSYNKMFVSYLRIFH--RLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQV 221
             P   +    K       ++   RLG+    +   + P      + +    A+      
Sbjct: 211 CRPSQVEEEIKKTLDFVKAVYGVLRLGVGYR-LALSTRPKDHFIGTEDEWNRAEDRLKTA 269

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
             S         ++                     A      +  + DS  +  + +   
Sbjct: 270 LDSSGMEWSINEADG--------------------AFYGPKIDIVIKDSDGKEHQTATIQ 309

Query: 282 IEVGHIFYFGTKYSLPMSAT---------------FKGADGKDHYVQMGSYGIGAMRVVA 326
           ++    F    +++L   A                     G    V +    +G++  + 
Sbjct: 310 LD----FQLPKRFALEYQAPAPEYEARGETTNDPILLAEYGPVRPVMIHRAVLGSVERLM 365

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV----------- 375
           A++  S+DGK   WP  + P +  ++ +    +   D  +++   L  +           
Sbjct: 366 ALLIESYDGK---WPFWLNPRQAIILTVNT-SRPVLDWADEVKEILLGLRKEAGQTSTEG 421

Query: 376 -----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                G  V  D     +GS+   A   G+   ++VG + V   +V +
Sbjct: 422 PVNPTGLAVDVDYSARSLGSKIREARTNGYSQILVVGEEDVKHGQVSL 469


>gi|119613715|gb|EAW93309.1| glutamyl-prolyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 1511

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 140/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 1016 EAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1075

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1076 YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1135

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1136 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1185

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1186 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1217

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1218 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1257

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1258 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1316

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1317 EDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1376

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1377 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1411


>gi|47458979|ref|YP_015841.1| prolyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|81828486|sp|Q6KIE6|SYP_MYCMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|47458307|gb|AAT27630.1| prolyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 476

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 152/414 (36%), Gaps = 68/414 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   ++P      +NV +   +         + +PTL    L   E      +  E++ 
Sbjct: 36  KGNIVFMPNSYGIWENVQSNFNKIIKELNVKNLYLPTLIPESLINSEKDHVQGFAPELIT 95

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D    + +   PT E +  + F++ + SY +LP    Q    FR E +     +R
Sbjct: 96  VEKVGDKVLNEKLFLRPTSEVLFAEYFKTQLNSYNDLPLLLNQWANVFRWE-KTTSPFLR 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EFL ++ ++   + E +     KM   Y   F      +IP+      IG     E  
Sbjct: 155 NSEFLWQEGHTSHYSEEEAHQFSKKMIQIYANFFEE--FLAIPVI-----IGQKTESEKF 207

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A                                                H     +++
Sbjct: 208 AGA------------------------------------------------HTTYTIEAM 219

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            ++     R ++ G   Y G  ++     +FK  D    +V   S+GI + R++ A+I  
Sbjct: 220 MKDG----RALQSGTSHYLGQNFAKAFDISFKDKDNSKSFVYQTSWGI-STRLIGAIIMV 274

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +GII P  +A  ++ +I +    +         ++  L      V  +D  + +G 
Sbjct: 275 HGDNRGIIMPPKIATNQVDIITVFANKNPEVLQKANDLFKTLKN-DFRVRINDSNKSVGF 333

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + A +++ G P+++ +G + +  +KV +  R T  + D+ ++E+ +    +   
Sbjct: 334 KAAQSEIEGTPIRIEIGPEDLKQNKVILIRRDTQEKIDVKIDELKSEIFSQIEK 387


>gi|289830169|ref|ZP_06547591.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 290

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 84  DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 143

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 144 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 203

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 204 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 263

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 264 YKYRRSGEKSLIKTGDIVDYLVKAIK 289


>gi|196001647|ref|XP_002110691.1| hypothetical protein TRIADDRAFT_54976 [Trichoplax adhaerens]
 gi|190586642|gb|EDV26695.1| hypothetical protein TRIADDRAFT_54976 [Trichoplax adhaerens]
          Length = 1241

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 152/457 (33%), Gaps = 76/457 (16%)

Query: 2    RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREE 60
            + S+  L I +E     E  S   + +  MI  H   G Y   P      + +      E
Sbjct: 837  KVSRLGLEIAKEENLG-EWYSQA-ITKAEMIEYHDVSGCYILRPWSYAIWEYIKDFFDAE 894

Query: 61   QNRTGAIEMSVP-TLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMT 115
              + G   +  P  +  A L  E      +  E+  +    D    + +   PT E VM 
Sbjct: 895  IKKLGVKNVYFPIFVSKAALEREKTHISDFAPEVAWVTKSGDTELAEPIAIRPTSETVMY 954

Query: 116  DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
              +   IKS+R+LP    Q     R E +     +R+REFL ++ +S  ++ + ++    
Sbjct: 955  PSYAKWIKSHRDLPLKLNQWNNVVRWEFKHPQPFIRTREFLWQEGHSAFVSKKEAEEEVF 1014

Query: 176  KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
             +   Y RI+    L +IP+                V     E + F             
Sbjct: 1015 TILELYRRIYEE--LLAIPV----------------VKGRKTEKEKFAG----------- 1045

Query: 236  NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                         E   D+         RG +     + G  +S
Sbjct: 1046 ----------------------GDFTTTVEAFIDANG-------RGAQGATSHHLGQNFS 1076

Query: 296  LPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                  ++  + K+  +V   S+GI + R +  +     D KG+I P  VA  ++ +I  
Sbjct: 1077 KMFEIVYEHPETKEKAFVYQNSWGI-STRTLGVLCLVHGDNKGLIIPPKVADIQVIIIPC 1135

Query: 355  KAHDQVCRDACEKIYAR-------LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIV 406
                 +  D   KIY         L   G     D       G +F   +L G PL++ +
Sbjct: 1136 GISANLSEDERNKIYDSCSSYVKILKDGGIRADCDTRDNYSAGWKFNHYELKGVPLRMEL 1195

Query: 407  GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G K + +++     R    +   + +  + +     +
Sbjct: 1196 GPKDIKNNQFVTVRRDNAQKSSSNADNAVEHIKMLLN 1232


>gi|126306851|ref|XP_001367334.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 1
            [Monodelphis domestica]
          Length = 1591

 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 140/452 (30%), Gaps = 77/452 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  +   G Y   P      + +      E  + G    
Sbjct: 1096 EAKKEENLADWFSQVITKAEMIEYYDVSGCYILRPWAYSIWEAIKDFFDAEIKKLGVENC 1155

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1156 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1215

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E           +   +
Sbjct: 1216 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATYE----------EAAEEV 1265

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L +                                +      +    T+ +    
Sbjct: 1266 LQILDLYAR----------------------------VYEELLAIPVVKGRKTEKEKFAG 1297

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1298 GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIIFED 1337

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      A  +
Sbjct: 1338 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALSE 1396

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              R+A    C     RL  V   V  D       G +F   +L G P+++ VG + + + 
Sbjct: 1397 EDREALIRKCNDYQKRLLTVNIRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNC 1456

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +     R TG +  ++ +E            +
Sbjct: 1457 QFVAVRRDTGEKLTIAEKEAETKLRDILEEIQ 1488


>gi|326437267|gb|EGD82837.1| threonyl-tRNA synthetase 1 [Salpingoeca sp. ATCC 50818]
          Length = 604

 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 151/438 (34%), Gaps = 54/438 (12%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK      + +  + E  +H  + ++    M H  S G   +LP G + L  +  +IR +
Sbjct: 145 SKQMFRHWKRDVEEREKYNHSAVGKSLSIFMQHDTSPGAPFFLPHGVRLLHRLTDLIRRQ 204

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---------------MI 105
               G  E+  P + S  LW  SG +D Y  +M R+   ++K+                 
Sbjct: 205 FRIRGYEEVMTPLVFSQKLWETSGHWDHYRDDMYRVMGFDEKSSGNGGNDDDDDDEYLRG 264

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFD 164
             P +      IF+   +S+ +LP    +     R+E      G+ R R+F   DA+ F 
Sbjct: 265 LKPMNCPAHCLIFKHTKRSHHDLPLRLGEFSALHRNEASGALAGLTRVRQFHQDDAHIF- 323

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            T E  +            ++   G     +   + P       EF     T +      
Sbjct: 324 CTEEQIQQEVAGCLDFVRTVYDACGFTY-SLTFSTRP------DEFTGDISTWDRAEAQL 376

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           +  +D      + +  D               A      +  L D +    + +   ++ 
Sbjct: 377 RACLDAAHIDFDINEGD--------------GAFYGPKIDVYLEDRMGRRHQSATIQLD- 421

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
              F    ++ L  +     A  +   V +    +G++  + AV+     G   +W    
Sbjct: 422 ---FQLPQRFDLNFT---DAAMMQQRPVIIHRAILGSLERMTAVLLEHTRGHLPLW---C 472

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P +++++++ +  +    A    + +L   G           I  +   A+ L F   +
Sbjct: 473 SPRQVAVLSVSSASRAAAAAV---HRQLVSDGLHAETFLEDTTIARKVRAAEQLKFNAII 529

Query: 405 IVGSKFVSDSKVEIKHRL 422
           +VG +     K  ++ R 
Sbjct: 530 VVGDEEAKTGKFSVRWRD 547


>gi|322657153|gb|EFY53436.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322686288|gb|EFY82272.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
          Length = 290

 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 84  DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 143

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 144 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 203

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 204 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 263

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 264 YKYRRSGEKSLIKTGDIVDYLVKAIK 289


>gi|74006036|ref|XP_849468.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 2
            [Canis familiaris]
          Length = 1509

 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 139/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      +++      E  + G    
Sbjct: 1014 EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1073

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1074 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1133

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E           +   +
Sbjct: 1134 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFE----------EAAEEV 1183

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                                  +      +    T+ +    
Sbjct: 1184 LQILDL----------------------------YAKVYEELLAIPVVKGRKTEKEKFAG 1215

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1216 GDYTTTIEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIIFED 1255

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      A  +
Sbjct: 1256 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVASVQVVVIPCGITNALSE 1314

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              RDA    C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1315 EDRDALIIKCNDYRRRLLSVNVRVKVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1374

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +  ++  E          +
Sbjct: 1375 QFVAVRRDTGEKLTVADNEAETKLKAILED 1404


>gi|320335266|ref|YP_004171977.1| prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756555|gb|ADV68312.1| prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 504

 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/226 (38%), Positives = 130/226 (57%), Gaps = 3/226 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  +    +  P +A++ASH+ ++R G + +   G+Y+ LPL  +    + A++  E
Sbjct: 1   MRWSALWAFTSRAMPSEADVASHQWLVRAGFVERVGAGLYASLPLMSRVEARLEALVHAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
               GA E+ +P LQ A LW  SGR+D+Y  E  M  LADR  +A+   PTHEE +  + 
Sbjct: 61  MRAVGAQEVRLPMLQPAALWAASGRWDAYRAEGLMFSLADRAGRALTLAPTHEEAVAFLA 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  ++   +LP   YQ+  KFRDELRPR G++R+REF MKDAYS          ++  M 
Sbjct: 121 RG-LRREADLPKVVYQVGRKFRDELRPRGGLLRAREFTMKDAYSVHADEVSLAGTFEAMS 179

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            +Y R+   LG+    + A+SG IGG +S EF+VL+D GE  V  +
Sbjct: 180 GAYARLLGALGVPWRAVEADSGSIGGAVSREFMVLSDIGEDTVLTA 225



 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 1/171 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+ + V+ARGIEVGH F  G +Y+  + A F GADG      MG YGIG  R+  AV E 
Sbjct: 335 PQQRWVAARGIEVGHAFQLGARYTEALGARFVGADGSSRAPLMGCYGIGVSRLAQAVAEV 394

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + DG G+ WP  +APF + +    + D   R+A E++Y  L   G D   DD  E+ G +
Sbjct: 395 TCDGWGLNWPAVIAPFGVVVTVTNSADAAQREAGERVYGALVAAGVDALLDDRAERAGVK 454

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              A+++G PL+V VG + ++   VE+  R +   E   ++ V+       
Sbjct: 455 LRDAEMIGVPLRVTVG-RDLAAGNVELFTRRSRSCEVFHVDAVVGAVQRSL 504


>gi|83645563|ref|YP_433998.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|83633606|gb|ABC29573.1| Threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 415

 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 139/424 (32%), Gaps = 46/424 (10%)

Query: 28  RTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
              + H  +   G+  W P G +    V   IR         E++ P     +LW  SG 
Sbjct: 10  ELDLFHSEAQGPGMAFWHPRGWRMFRTVKNHIRAAYEAESFQEVATPQFLKRELWETSGH 69

Query: 86  YDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           ++ Y  +M   A   ++      P        +++  ++SY++LP   ++  L  R+E  
Sbjct: 70  WEKYADDMFVGAGFGEEPEYALKPMSCPAHILLYKRGVRSYKSLPLRLFEFGLVHRNERS 129

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+MR R+F   DA+ F    +              R++   G     +   + P  
Sbjct: 130 GALNGLMRLRQFTQDDAHVF-CRWDQVSQEIQAFLRRAERVYADYGYGRPQVFISTRP-- 186

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                ++    +  E                      +  +  S          A     
Sbjct: 187 ---QRDYFGAPEDWERAELM---------------LAEACAAASAEFVRQEGEGAFYGPK 228

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGIG- 320
            E         K    R  ++G I      +++P      +  A G+     +    +  
Sbjct: 229 IELAL------KDGQGRQWQMGTI---QLDFNMPERFDLHYIDAAGERRRPVILHQAVYG 279

Query: 321 -AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R +  ++E+         P  V P  + L ++    Q     CE +   L + G  V
Sbjct: 280 SIERWIGVLLETYQA----ALPAWVHPQPVVLASVG---QDAVAYCESVGELLRRHGVPV 332

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D   + +  +  V      PL +I G++ +++  + ++ R  G +   S +E++    
Sbjct: 333 EMDLANDSLAKKMKVLRRYKTPLVLIAGAQEMANDSIVVRRRG-GEQALASRDELVAIVR 391

Query: 440 HRFS 443
              S
Sbjct: 392 EALS 395


>gi|114572701|ref|XP_001172372.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 1434

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 141/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 939  EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 998

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 999  YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1058

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1059 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1108

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1109 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1140

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1141 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1180

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1181 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1239

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL +V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1240 EDKEALIAKCNDYRRRLLRVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1299

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1300 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1334


>gi|144574986|gb|AAZ43589.2| threonyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 580

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 148/418 (35%), Gaps = 36/418 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL IL++   RD      ++ L T   +    +G   WL  G    + +  ++ +   + 
Sbjct: 169 FLAILKDRKERDHRKIGKEMKLFT--FNPLGGQGFPFWLEDGMHIHNEIRNLVLKMDKKY 226

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P      L+  SG  D Y  +M +     ++ +I  P        +F S  +S
Sbjct: 227 GFTEVLTPHFGEEKLYKISGHLDHYKDDMFKPIVCENERLIPRPMTCPHHIILFGSEKRS 286

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +    +R E      G+ R R  L+ + + F +  +     + KMF     
Sbjct: 287 YRDLPIRYSEQSQLYRYEKSGALTGLERVRSMLLTEGHLF-VRKDQIAQEFKKMFELISD 345

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             +   +K   +                   D  + + + + D M      E       +
Sbjct: 346 TLNAFKIKINYVSLSLR--------------DKADKEKYYANDQMWDAAEFELKKIIKEL 391

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            +    +   A  A      + ++  +L     VS   ++    F    K+      ++ 
Sbjct: 392 GIKYEEKIGEA--AFYGPKVDIQILTALNHEVTVSTIQLD----FLLPQKF----EISYT 441

Query: 304 G-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + ++  V +    IG      +++     G    W   +AP ++++I +  +     
Sbjct: 442 NSENNEEVPVLIHRGLIGTYERFISILIEQTKGNLPFW---LAPKQVTIIPVNENTDY-- 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           +  +++  +L  +      D   E++  +   A +     QVI+G    ++  +  + 
Sbjct: 497 EYAKEVNDKLLALDIRSKVDFRNERLSKKVREAQISKSKFQVILGEAEKTNKTISYRR 554


>gi|114572703|ref|XP_001172380.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 3 [Pan
            troglodytes]
 gi|114572705|ref|XP_001172392.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 4 [Pan
            troglodytes]
 gi|114572707|ref|XP_001172403.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 5 [Pan
            troglodytes]
          Length = 1440

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 141/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 945  EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1004

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1005 YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1064

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1065 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1114

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1115 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1146

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1147 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1186

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1187 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1245

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL +V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1246 EDKEALIAKCNDYRRRLLRVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1305

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1306 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1340


>gi|198425469|ref|XP_002126649.1| PREDICTED: similar to glutamyl-prolyl-tRNA synthetase [Ciona
            intestinalis]
          Length = 1442

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 142/435 (32%), Gaps = 75/435 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
            +++ +  M+  +   G Y   P      + +      E  + G      P   S A L  
Sbjct: 959  QVITKAEMVEYYDISGCYILRPWSYGIWEKIKEFFDAEIKKLGVENSYFPIFVSQAALER 1018

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E    D +  E+  +    +    + +   PT E VM   +   I+S+R+LP  + Q   
Sbjct: 1019 EKNHIDDFAPEVAWVTKSGETELQEPIAVRPTSETVMYPAYAKWIQSHRDLPLKYNQWCN 1078

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++          ++ +   +   +   L L       
Sbjct: 1079 IVRWEFKHPQPFLRTREFLWQEGHT----------AFAEAKEAQEEVLQILDL------- 1121

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                            A   E  +          +    TD +     +          A
Sbjct: 1122 ---------------YAQVYEDLLAI------PVVCGRKTDKEKFAGGDYTTTVEAFISA 1160

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMG 315
                                S R I+     + G  +S     +F+  +   K+      
Sbjct: 1161 --------------------SGRAIQGATSHHLGQNFSKMFDISFEDPNQPVKNVIAYQN 1200

Query: 316  SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKI 368
            S+G+   R +  ++    D KG++ P  VA  ++ ++         +   +V    C+  
Sbjct: 1201 SWGLT-TRTIGVMVMVHGDDKGLVLPPKVANLQVVIVPCGVTASLPEEDKKVLYSKCDDY 1259

Query: 369  YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             ++L  VG     D       G +F   +L G P+++ VG + +   +  +  R  G + 
Sbjct: 1260 LSKLKSVGIRAKSDTRDNYSPGWKFNHWELKGVPIRLEVGPRDLKQQQCVVVLRHDGRKI 1319

Query: 428  DMSLEEVINYASHRF 442
             +   +V    +   
Sbjct: 1320 TIPDADVTTSIADLL 1334


>gi|86742942|ref|YP_483342.1| prolyl-tRNA synthetase [Frankia sp. CcI3]
 gi|114152196|sp|Q2J529|SYP_FRASC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86569804|gb|ABD13613.1| prolyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 468

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 145/453 (32%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  F    Q+    AE+A +  +  T +I           P G    + + A +     
Sbjct: 7   RSTDFPRWYQDVLAKAELADNGPVRGTMVIR----------PYGYAIWERMQAEVDSRIK 56

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
             GA+    P       L  E+   + +  E+  +        ++ ++  PT E V+ + 
Sbjct: 57  AAGAVNAYFPLFIPESYLRREAEHVEGFSPELAVVTIGGGKELEEPVVVRPTSETVIGEY 116

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                +SYR+LP    Q     R E       +R R FL                     
Sbjct: 117 LAKWTQSYRDLPLLLNQWANVVRWE-------LRPRLFLR-------------------- 149

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        S EF  L   G T      D   +       
Sbjct: 150 -----------------------------SSEF--LWQEGHTAHADEADAAAYARRIALE 178

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            + D ++    V  +                    E      + +++      G  ++  
Sbjct: 179 VYRDFMTQVLAVPVFVGVKTRRERFAGATN-TMTCEGMMGDGKALQMATSHELGQNFARA 237

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F GADG  H     S+G  + R+V  +I +  D  G+  P  +AP ++ ++ ++  
Sbjct: 238 FDIDFLGADGARHLAWTTSWGC-STRMVGGLIMAHGDDNGLRVPPRLAPTQVVVLPVR-D 295

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           ++       +I A L+  G  V  D   G   G +   A++ G P++V VG + ++   V
Sbjct: 296 EETVVAKARQIAAALTDAGLRVQVDARPGLSFGRRVTDAEIKGIPVRVEVGPRDLAAGNV 355

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R T  +  + L EV           +  L
Sbjct: 356 TLVRRDTSEKVPVPLAEVATRVPVLLGEVQADL 388


>gi|257413581|ref|ZP_04743496.2| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203071|gb|EEV01356.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 241

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 98/229 (42%), Positives = 134/229 (58%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 9   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITCKIEQILRE 67

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 68  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 127

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 128 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 187

Query: 180 SYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +Y RIF R G+   + + ++SG +GG LSHEF++L   GE  +    + 
Sbjct: 188 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNEC 236


>gi|74006044|ref|XP_858992.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 5
            [Canis familiaris]
          Length = 1508

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 139/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      +++      E  + G    
Sbjct: 1013 EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1072

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1073 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1132

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E           +   +
Sbjct: 1133 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFE----------EAAEEV 1182

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                                  +      +    T+ +    
Sbjct: 1183 LQILDL----------------------------YAKVYEELLAIPVVKGRKTEKEKFAG 1214

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1215 GDYTTTIEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIIFED 1254

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      A  +
Sbjct: 1255 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVASVQVVVIPCGITNALSE 1313

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              RDA    C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1314 EDRDALIIKCNDYRRRLLSVNVRVKVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1373

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +  ++  E          +
Sbjct: 1374 QFVAVRRDTGEKLTVADNEAETKLKAILED 1403


>gi|291535587|emb|CBL08699.1| prolyl-tRNA synthetase, family I [Roseburia intestinalis M50/1]
          Length = 479

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 151/449 (33%), Gaps = 77/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  R AE+  +             KG     P G    +N+   +     
Sbjct: 14  MEEDFAQWYTDVVRKAELIDYS----------SVKGCMILRPAGYAIWENIQNELDRRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     ++  + +   PT E +  D 
Sbjct: 64  ETGVENVYLPLFIPESLLEKEKDHVEGFAPEVAWVTYGGLNQLPERLCVRPTSETLFCDF 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +++ I+SYR+LP  + Q     R E         +R FL    + +              
Sbjct: 124 YKNIIQSYRDLPKVYNQWCSVVRWEKE-------TRPFLRSREFLWQ------------- 163

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                         H     A+  E +     +           
Sbjct: 164 ----------------------------EGHTAHATAEEAEQRTVQMLNVYA-------- 187

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           DF + +    +V          +        ++L  +     + ++ G    FG  ++  
Sbjct: 188 DFCEEVLAMPVVRGQKTEKEKFAGAEATYTIEALMHDG----KALQSGTSHNFGNGFAKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   D K  YV   S+G+   R++ A+I    D  G++ P  +AP +  +I I+  
Sbjct: 244 FGIQYTDKDNKLQYVYQTSWGMT-TRLIGAIIMVHGDDSGLVLPPRIAPVQAMVIPIQQQ 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++  R+ KV C    DD  +  G +F+  ++ G P+++ +G K ++  K  
Sbjct: 303 KDGVLDTAKEVCERIGKV-CRAKLDDSDKSPGWKFSEQEMRGIPVRIELGPKDIAAGKCV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
              R T  + +++L+E+           +
Sbjct: 362 AVRRDTREKIEIALDELEAKLPELLEQIQ 390


>gi|165971562|gb|AAI58467.1| LOC100145057 protein [Xenopus (Silurana) tropicalis]
          Length = 674

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 144/450 (32%), Gaps = 77/450 (17%)

Query: 13  ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 179 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 238

Query: 70  SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 239 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 298

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E +     +R+REFL ++ ++   T E           +   +
Sbjct: 299 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATYE----------EAAEEV 348

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              L L    +  +   I                             +    T+ +    
Sbjct: 349 LQILDL-YARVYEDLLAI---------------------------PVVKGRKTEKEKFAG 380

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +          A                    S+R I+     + G  +S      F+ 
Sbjct: 381 GDYTTTVEAFISA--------------------SSRAIQGATSHHLGQNFSKMFEIVFED 420

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
               G   Y    S+G+ + R + A+     D  G++ P  VA  ++ +I         +
Sbjct: 421 PKSPGLKQYAYQNSWGL-STRTIGAMTMVHADNIGMVLPPRVACVQVIIIPCGITNTLSE 479

Query: 360 VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +DA    C++   RL  V      D       G +F   +L G P+++ VG + + + 
Sbjct: 480 EDKDALLKKCDQYLKRLLNVDVRARADVRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNK 539

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +     R  G ++ +S ++           
Sbjct: 540 QFVAVRRDNGEKQTISEDQAETRLKEILEE 569


>gi|255545202|ref|XP_002513662.1| prolyl-tRNA synthetase, putative [Ricinus communis]
 gi|223547570|gb|EEF49065.1| prolyl-tRNA synthetase, putative [Ricinus communis]
          Length = 548

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/462 (16%), Positives = 146/462 (31%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +   +AE+A +  +  T +I           P G    + +   +  +  
Sbjct: 74  RSEDFNAWYLDVIANAELADYGPVRGTMVIR----------PYGYAIWEAIQDYLNVKFK 123

Query: 63  RTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P         +     + +  E+  +        ++ ++  PT E ++  +
Sbjct: 124 ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHM 183

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP    Q     R E       MR++ F+    + +              
Sbjct: 184 FTQWIHSYRDLPLMVNQWANVTRWE-------MRTKPFVRTLEFLWQ------------- 223

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                         H      +  E +                 
Sbjct: 224 ----------------------------EGHTAHATPEEAEKEALQM------------I 243

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D     +         A   +  +     +     E      + ++ G     G  +S  
Sbjct: 244 DVYTKFAYEQAAIPVIAGRKSKVETFAGAVRTYTIEAMMGDRKALQAGTSHNLGQNFSRA 303

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F   +G+  +V   S+ I + R V  +I +  D  G++ P  +AP ++ ++ I   
Sbjct: 304 FGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPKIAPIQVVIVPIWKK 362

Query: 358 DQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
           D       +A   +   L   G  V  DD  ++  G +F   ++ G PL++ +G + VS 
Sbjct: 363 DTEKAGVLNAASSVREVLQSSGLKVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSS 422

Query: 414 SKVEIKHRL----TGIREDMSLE-EVIN-YASHRFSNNRPVL 449
             V I  R      G    +S+E  ++  Y   +    +  L
Sbjct: 423 GSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSSL 464


>gi|71894192|ref|YP_278300.1| threonyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 581

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 148/418 (35%), Gaps = 36/418 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL IL++   RD      ++ L T   +    +G   WL  G    + +  ++ +   + 
Sbjct: 170 FLAILKDRKERDHRKIGKEMKLFT--FNPLGGQGFPFWLEDGMHIHNEIRNLVLKMDKKY 227

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P      L+  SG  D Y  +M +     ++ +I  P        +F S  +S
Sbjct: 228 GFTEVLTPHFGEEKLYKISGHLDHYKDDMFKPIVCENERLIPRPMTCPHHIILFGSEKRS 287

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +    +R E      G+ R R  L+ + + F +  +     + KMF     
Sbjct: 288 YRDLPIRYSEQSQLYRYEKSGALTGLERVRSMLLTEGHLF-VRKDQIAQEFKKMFELISD 346

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             +   +K   +                   D  + + + + D M      E       +
Sbjct: 347 TLNAFKIKINYVSLSLR--------------DKADKEKYYANDQMWDAAEFELKKIIKEL 392

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            +    +   A  A      + ++  +L     VS   ++    F    K+      ++ 
Sbjct: 393 GIKYEEKIGEA--AFYGPKVDIQILTALNHEVTVSTIQLD----FLLPQKF----EISYT 442

Query: 304 G-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + ++  V +    IG      +++     G    W   +AP ++++I +  +     
Sbjct: 443 NSENNEEVPVLIHRGLIGTYERFISILIEQTKGNLPFW---LAPKQVTIIPVNENTDY-- 497

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           +  +++  +L  +      D   E++  +   A +     QVI+G    ++  +  + 
Sbjct: 498 EYAKEVNDKLLALDIRSKVDFRNERLSKKVREAQISKSKFQVILGEAEKTNKTISYRR 555


>gi|37359720|dbj|BAC97834.1| glutamyl-prolyl-tRNA synthetase [Oryzias latipes]
          Length = 587

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 138/455 (30%), Gaps = 77/455 (16%)

Query: 13  ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E  ++  +A    +++ +  MI  +   G Y   P      + +     +E  + G    
Sbjct: 92  EAKKEENLADWYSQVITKAEMIEYYDVSGCYVLRPWSYSIWEAIKDFFDKEIKKLGVENC 151

Query: 70  SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             P   S A L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 152 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 211

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E +     +R+REFL ++ ++   T E           +   +
Sbjct: 212 HRDLPIKLNQWCNIVRWEFKHPQPFLRTREFLWQEGHTAFATKE----------EATEEV 261

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              L L +                                +      +    T+ +    
Sbjct: 262 MQILDLYARI----------------------------YEELLAIPVVKGRKTEKEKFAG 293

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +          A                    S R I+     + G  +S      F+ 
Sbjct: 294 GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIVFED 333

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
               G+       S+GI   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 334 PKRPGEKQLAFQNSWGIT-TRTIGVLTMVHGDNMGLVLPPRVACVQVVIIPCGITASLPE 392

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +     C K   RL   G  V  D       G +F   +L G P+++ VG K +   
Sbjct: 393 QEKEALLAQCSKYLKRLLDAGVRVKSDFRDNYSPGWKFNHWELKGVPVRLEVGPKDMQQK 452

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +     R +G +  +   EV           +  L
Sbjct: 453 QCVAVRRDSGAKITLPEGEVEKRLVAMLEEIQGSL 487


>gi|126306853|ref|XP_001367377.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 2
            [Monodelphis domestica]
          Length = 1511

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 140/452 (30%), Gaps = 77/452 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  +   G Y   P      + +      E  + G    
Sbjct: 1016 EAKKEENLADWFSQVITKAEMIEYYDVSGCYILRPWAYSIWEAIKDFFDAEIKKLGVENC 1075

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1076 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1135

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E           +   +
Sbjct: 1136 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATYE----------EAAEEV 1185

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L +                                +      +    T+ +    
Sbjct: 1186 LQILDLYAR----------------------------VYEELLAIPVVKGRKTEKEKFAG 1217

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1218 GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIIFED 1257

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      A  +
Sbjct: 1258 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALSE 1316

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              R+A    C     RL  V   V  D       G +F   +L G P+++ VG + + + 
Sbjct: 1317 EDREALIRKCNDYQKRLLTVNIRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNC 1376

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +     R TG +  ++ +E            +
Sbjct: 1377 QFVAVRRDTGEKLTIAEKEAETKLRDILEEIQ 1408


>gi|14970558|emb|CAC44360.1| ProS protein [Erwinia chrysanthemi]
          Length = 224

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 113/204 (55%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  +
Sbjct: 18  DGKHYFGINWERDTALPQVADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEAL 77

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 78  KATVQGEDGRNQTLTMGCYGIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHK 137

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E IY +L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 138 SFRVQEVAEGIYQQLRANGVDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIE 197

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            KHR  G +E +   +++ +   +
Sbjct: 198 YKHRRKGEKEMIKAGDIVEFLLSQ 221


>gi|212542487|ref|XP_002151398.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210066305|gb|EEA20398.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 641

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 83/236 (35%), Positives = 128/236 (54%), Gaps = 4/236 (1%)

Query: 2   RRSKYFLPI--LQENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S ++LP   ++    + E    + L++R G I Q   G++  LPLG +  + + A+I 
Sbjct: 42  RTSNFWLPTGGIERKAAETEKEDANDLLIRAGFIRQAYSGVFHMLPLGLRVQNKLEALID 101

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 GA ++S+ +L S +LW ++GR    G E+ +  DR +   +  PTHEE +T + 
Sbjct: 102 THMQSLGASKVSLSSLSSQELWEKTGRL-KSGSEVFKFNDRKESRFLLAPTHEEEITSLV 160

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S + SY+ LP   YQI  K+RDE RPR G++R REF+MKD Y+FD   E +  +Y    
Sbjct: 161 ASLVNSYKELPLRLYQISRKYRDEARPRQGLLRGREFVMKDLYTFDYNAEQALATYEATR 220

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +Y RIF  L +  +   A+SG +GG+LSHEF  ++D GE  +    D        
Sbjct: 221 EAYKRIFDTLKVPYLVAAADSGNMGGNLSHEFHFISDKGEDTLISCSDCDYVYNEE 276



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 21/185 (11%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATF-----------KGAD-GKDH--YVQMGSYGIGA 321
             +   +E+GH FY GT+YS  + A               ++  K     ++MG +GIG 
Sbjct: 459 LHTHNAVELGHTFYLGTRYSEVLKAKVFVDSSATKSNESDSNSNKPQNVPMEMGCHGIGV 518

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDV 379
            R+++AV ++  D +G+ WP ++APF+I ++  +  +       E +Y  L +     DV
Sbjct: 519 SRMISAVADACSDVRGLNWPRAIAPFEIIVVPARNLESE----AENVYDLLRQQTDTSDV 574

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYA 438
             DD  + +G +   AD++G+P+ V+VG  +    K+E+  R L G+RED+ ++ +I+Y 
Sbjct: 575 ILDDRTKHVGWKLKDADMIGYPIVVVVGKAWQWAQKLEVHCRQLDGLREDVPVDNLIDYI 634

Query: 439 SHRFS 443
               +
Sbjct: 635 RSLLA 639


>gi|302528111|ref|ZP_07280453.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302437006|gb|EFL08822.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 415

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 141/423 (33%), Gaps = 46/423 (10%)

Query: 21  ASHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R  G+         G+   LP G      +   +RE + R G   +S P L  
Sbjct: 15  PDHRKLGRELGLFGSDPLIGAGLPYLLPDGAAIRHVLEEYVREVERRAGYQHVSSPVLGK 74

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +  Y ++M    D   + ++  P+       I+RS   S+R LP    ++ 
Sbjct: 75  RELYELSGHWAHYREDMFPPMDLGGEQVVLRPSLCPHHALIYRSRAHSHRELPLRLAELG 134

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             +R EL     G+ R R   + DA+ F L PE              R+   LGLK    
Sbjct: 135 GMYRAELSGVLGGLSRVRAIQLNDAHIFCL-PEQVGAEVRGALELIRRVCQDLGLKPARY 193

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           R       G  +          E  V           P                      
Sbjct: 194 RLSLPDNRGKYAGAAEAWDRAAEVLVEALDGIEYERGPG--------------------E 233

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM- 314
            A      + +L DS      +S   I++     FG +Y         G DG+ H   + 
Sbjct: 234 AAFYGPKIDVQLADSSGRESTLSTVQIDLHQPEQFGLEY--------VGPDGRAHRPVLV 285

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++  V A +   H G     P  +AP +++++ +   +    +A          
Sbjct: 286 HRAVLGSLERVLAQLIEEHGGAF---PPWLAPVQVAVLPVGDAELAAAEAV---AEEAMA 339

Query: 375 VGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G        D G  +G++     L   P Q +VG        V  + R     + +  +
Sbjct: 340 AGLRAEVVPADRG-SLGARIRDRRL--VPYQAVVGPLEADAGLVAPRLRDGRRLDPLLAK 396

Query: 433 EVI 435
           E I
Sbjct: 397 EFI 399


>gi|31958|emb|CAA38224.1| glutaminyl-tRNA synthetase [Homo sapiens]
 gi|45643460|gb|AAS72877.1| proliferation-inducing protein 32 [Homo sapiens]
          Length = 1440

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 140/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 945  EAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1004

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1005 YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1064

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1065 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1114

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1115 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1146

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1147 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1186

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1187 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1245

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1246 EDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1305

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1306 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1340


>gi|67517326|ref|XP_658540.1| hypothetical protein AN0936.2 [Aspergillus nidulans FGSC A4]
 gi|40746809|gb|EAA65965.1| hypothetical protein AN0936.2 [Aspergillus nidulans FGSC A4]
 gi|259488776|tpe|CBF88493.1| TPA: threonyl-tRNA synthetase (AFU_orthologue; AFUA_1G16210)
           [Aspergillus nidulans FGSC A4]
          Length = 523

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 145/417 (34%), Gaps = 56/417 (13%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           +S G   +LP G   ++ + + +R +  + G  E+  PT+    LW  SG + +Y  +M 
Sbjct: 75  YSPGSPLFLPNGTHIINKLISFLRTQYLQYGFREVLTPTIYKQSLWEVSGHWQNYKDDMY 134

Query: 95  RLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            +  R            +++    P +      +F+S   SYR LP  +       R+E+
Sbjct: 135 EVRGRGAMGDTEGEAGENESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEI 194

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G+ R R F   D + F   P+  K            +    GL    +   + P 
Sbjct: 195 SGSLSGLTRVRRFHQDDGHIF-CRPQQIKGEIKSALGFVDLVMTTFGLGPYRLVLSTRPE 253

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              +    + L D+ E Q+  +                 +              A     
Sbjct: 254 KDFIGD--LQLWDSAEAQLREA-----------------LDQTGKNWAINEGDGAFYGPK 294

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIG 320
            + +L D   +  ++S   +++     F  +Y +            G+   V +     G
Sbjct: 295 IDIQLQDQAGKYHQLSTIQLDMNLPRRFELEYQVAEGEEDYNPATPGRATPVLIHRANFG 354

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKI--YARLSKV 375
           ++    A++   + G    WP  ++P +  ++ +   D V +   +A  +I  +  L + 
Sbjct: 355 SLERFLALLIEQYSG---RWPFWLSPRQGIILTVNQDDAVVKQAHEAAAQISGFKALDQN 411

Query: 376 GCD--------------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             D              +  D   + +  +   A  + + L  I+G K +++ ++ +
Sbjct: 412 AADGIPQPLSATDSTFLIDVDTSSQTLSKKIQRAKQMKYNLIFILGPKDLAEGRISV 468


>gi|153839390|ref|ZP_01992057.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|149747085|gb|EDM58073.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
          Length = 287

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 102/319 (31%), Gaps = 41/319 (12%)

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +     R+E      G+MR R F   DA+ F  T    +             +   G 
Sbjct: 1   MAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIKMVYDTYQTFGF 59

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            +I ++  + P     S E    ++    Q   S +        E   +   I       
Sbjct: 60  DNIVVKLSTRPEKRVGSDEIWDQSEEALKQSLESMEIPYEIQEGEGAFYGPKIEFTLYDC 119

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGK 308
                                        R  + G +      ++LP  + AT+ G + +
Sbjct: 120 ---------------------------LDRAWQCGTV---QLDFNLPGRLGATYVGENNE 149

Query: 309 D-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               V +    +G++     ++   + G    W   +AP +  L+NI           ++
Sbjct: 150 RLVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVLMNITDKQSG---YVQE 203

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R      
Sbjct: 204 IVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLG 263

Query: 428 DMSLEEVINYASHRFSNNR 446
              +++ I Y     S+ +
Sbjct: 264 KFKVDDFIAYIQDEISSRK 282


>gi|302336805|ref|YP_003802011.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301633990|gb|ADK79417.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 476

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 154/454 (33%), Gaps = 84/454 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ I+     +A++A +  +  + +I           P G    + +   + +    
Sbjct: 13  SQWYVDIIL----NAKLADYSPVKGSMVIR----------PHGYALWEAIQRNLDDMFKA 58

Query: 64  TGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
           TG      P L        E+   + +  E+  +     +  ++ ++  PT E ++  ++
Sbjct: 59  TGHTNAYFPLLIPESFIKKEAEHVEGFSPELAVVTHAGGEELEEPLVIRPTSETIIWSMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E        R+R FL    + +               
Sbjct: 119 KKWIQSYRDLPLLINQWANVLRWEK-------RTRLFLRTSEFLWQE------------- 158

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                                              A   E +       M          
Sbjct: 159 --------------------------------GHTAHATEKEAREETLRMLNVYKEFAEK 186

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +  I  L  +         A      E              + ++ G   + G  ++   
Sbjct: 187 WMAIPVLTGVKSPSEKFAGAIDTYAIEA--------MMQDHKALQAGTSHFLGQNFAKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KA 356
             TF+   G   YV   S+G+ + R+V A+I +  D KG++ P  ++P +  +I I    
Sbjct: 239 DVTFQNDTGSLEYVWATSWGV-STRLVGALIMTHSDDKGLVVPPKLSPVEAVIIPIFRNK 297

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + +       K+Y R+      V  D D     G +FA  ++LG P+++ +G + + + K
Sbjct: 298 NKEEVVGYARKLYDRMKDE-FRVKLDADDSNSPGWKFAEWEMLGCPVRIELGPRDMENGK 356

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +  R  G +E + +E V         + +  L
Sbjct: 357 AVLVRRDNGEKEIVDIEAVPARVGELLESIQTTL 390


>gi|57999481|emb|CAI45949.1| hypothetical protein [Homo sapiens]
          Length = 1512

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 141/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 1017 EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1076

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1077 YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1136

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S  +T          +  +   +
Sbjct: 1137 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFVT----------VEEAAEEV 1186

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1187 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1218

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1219 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1258

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1259 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1317

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1318 EDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1377

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1378 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1412


>gi|312217649|emb|CBX97596.1| hypothetical protein [Leptosphaeria maculans]
          Length = 829

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 143/450 (31%), Gaps = 81/450 (18%)

Query: 22  SHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
            H+ +  T    +   +S G    LP G      + A +R +  + G  E+  P +    
Sbjct: 97  DHRTLAETHDLFITSPYSPGSPLLLPNGAYVFQKLQAFLRAQYPQFGFEEVITPIIYKKS 156

Query: 79  LWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           LW +SG + +Y ++M  +  R            ++      P +      +FR  + SYR
Sbjct: 157 LWEKSGHWQNYAEDMFSVQGRGATAEIPQAEAEDNGEFGLKPMNCPGHCILFRDKVMSYR 216

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           NLP  +       R+E+     G+ R R F   DA+ F   P+       +       ++
Sbjct: 217 NLPVRYADFSALHRNEISGALTGLTRVRRFHQDDAHIF-CRPDQILAEIEQTLKFVGMVY 275

Query: 186 HRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  GL    +   + P      + E    A+   +    +          +         
Sbjct: 276 NTFGLGPYKLLLSTRPKENFIGTIEEWDRAEAQLSTALDNIGSEWAVNEGDG-------- 327

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       A      +  L DS  +  + +   ++    F    ++ L   A+ + 
Sbjct: 328 ------------AFYGPKIDIILKDSNGKEHQTATIQLD----FQLPQRFDLQYQASPEE 371

Query: 305 -ADGKD------------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
              G +              V +     G++    A++   + GK   W   ++P    +
Sbjct: 372 IEAGSEMSMDAGLDTSLRRPVMIHRAIYGSIERFMALLIEHYAGKYPFW---LSPRPAII 428

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCD----------------------VFWDDMGEQIG 389
           +++ + D         I A LS V                         +  D     +G
Sbjct: 429 LSLNS-DPKLLQHVSHIQAVLSGVKASKEPVVSPPSDPKPLPLSTIQLPIDIDTSSRPLG 487

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            + A A    +   ++VG + +    + ++
Sbjct: 488 KKIAEARTNKYNHIIVVGGREIEAGVMNLQ 517


>gi|213645917|ref|ZP_03375970.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 249

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 43  DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 102

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 103 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 162

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 163 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 222

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 223 YKYRRSGEKSLIKTGDIVDYLVKAIK 248


>gi|222873081|gb|EEF10212.1| predicted protein [Populus trichocarpa]
          Length = 264

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 1/174 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +    RGIEVGH+FY GTKYS  M+ATF   +GK    +MG YGIG  R+ AA I
Sbjct: 43  PDGAGELAIERGIEVGHVFYLGTKYSQAMNATFLAENGKPSLFEMGCYGIGVTRLPAAAI 102

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E +HD +GIIWPD++APF + +  I     +  ++A EK++A L  +G DV  DD GE+ 
Sbjct: 103 EQNHDERGIIWPDAIAPFTVVVCPIGMDRSEPVKEAAEKLHAELLALGVDVILDDRGERP 162

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G+ FA  +L+G P +V++  + + + +VE +HR       M+  +V+ +   R 
Sbjct: 163 GAMFADWELIGVPHRVVLSDRGLKEGQVEYQHRRDTEATKMAAADVLGHLKQRL 216


>gi|46108902|ref|XP_381509.1| hypothetical protein FG01333.1 [Gibberella zeae PH-1]
          Length = 548

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 83/211 (39%), Positives = 118/211 (55%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
             H+ ++R G + Q   GI+  LPLG +  D +  +I +  +  GA  +S+ T+ S +LW
Sbjct: 2   VGHEKLIRGGFLRQAHSGIFQLLPLGLRVQDKIEKLIDKHMHSVGASRLSLSTISSEELW 61

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             S R DS   E+ RL DR D  +I  PTHEE +T +    + SY++LP   YQI  K+R
Sbjct: 62  RRSNRLDSVAPELFRLKDRKDTPLILSPTHEEEITTLVAGIVNSYKDLPIRLYQITRKYR 121

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPR G++RSREFLMKD Y+FDLT   +  +Y ++  +Y   F  L L  +   A SG
Sbjct: 122 DERRPRHGLLRSREFLMKDLYTFDLTTSEAVETYRQVSGAYRAFFAELKLPYLIAEASSG 181

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +GGDLSHE+ + +  GE  V          
Sbjct: 182 DMGGDLSHEYHLPSAVGEDSVVSCDSCDYTA 212



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 26/200 (13%)

Query: 267 LFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSATFKGA--------------DGKD 309
             D  P   +      + +E GH F  GT+YS+P+ A                    G  
Sbjct: 352 DGDGCPRCDKGTLKIHKALECGHTFQLGTRYSVPLDACVDLPRSGLPEAAVEEGLTPGSR 411

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             VQMG +G+G  R+  AV E   D +G+ WP ++APF++++I          D    IY
Sbjct: 412 VPVQMGCHGVGVSRIFGAVAEILADERGLNWPRAIAPFEVTIIPSNGLADEPLD----IY 467

Query: 370 ARLSKV-----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             LSK      G DV  DD     G +   AD++G+P+ VI+G  F  +   E++ R   
Sbjct: 468 DTLSKNNGSQSGFDVVLDDRKRSFGWKMKDADMVGYPVLVILGKSFKENGTCEVQCRRLS 527

Query: 425 IREDMSLEEVINYASHRFSN 444
           +++++ ++E+  + S     
Sbjct: 528 VKDNVKVDELPEFISSLLDK 547


>gi|332231899|ref|XP_003265132.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Nomascus
            leucogenys]
          Length = 1512

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 140/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 1017 EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1076

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S + L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1077 YFPMFVSQNALEKEKTHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1136

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 1137 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 1186

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1187 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1218

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 1219 GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1258

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1259 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1317

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1318 EDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1377

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  +   E          + +  L
Sbjct: 1378 QFVAVRRDTGEKLTVVENEAETKLQAILEDIQVTL 1412


>gi|209882409|ref|XP_002142641.1| prolyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
 gi|209558247|gb|EEA08292.1| prolyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 687

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 152/442 (34%), Gaps = 70/442 (15%)

Query: 18  AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQ 75
           AE  S +++LR+ MI  +   G Y   P      + + +    +    G      P  + 
Sbjct: 200 AEWYS-QVILRSEMIDYYDVSGCYILRPWSYFIWETIKSKFDNKIKNYGVQNSYFPIFVT 258

Query: 76  SADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
              L  E    + +  E+  +    +    + +   PT E ++   +   I+S+R+LP  
Sbjct: 259 KQRLETEKSHVEGFSPEVAWVTRSGESDLAEPIAIRPTSETIIHPHYAKWIRSHRDLPLK 318

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             Q     R E +     +R+REFL ++ ++   T E +      +   Y  I+    L 
Sbjct: 319 LNQWTSAVRWEFKQPTPFIRTREFLWQEGHTAHATNEEATEMVRTILDDYADIYQD--LL 376

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           ++P+      I G  S E    A   ET        ++  IP          S N     
Sbjct: 377 AVPI------IKGIKS-ESEKFAGANET------MTIEGFIPENGRAIQAATSHNLGQNF 423

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            +                           GIE                   +   G   +
Sbjct: 424 SSMF-------------------------GIEF------------------EDEKGTKQF 440

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKI 368
           V   S+G+   R +  +I +  D  GII P  VAP ++ +I I       +  +  CE++
Sbjct: 441 VYQTSWGLT-TRSIGVMIMTHGDNNGIILPPKVAPIQVVIIPIVFKSSITEEQKIMCEEV 499

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L + G  V  DD      G ++   ++ G  ++  +G K +    V I  R    ++
Sbjct: 500 EKLLKEEGIRVHIDDRPNYTPGWKYNHWEVKGVCIRAEIGPKDIESKSVRIVIRDNRAKK 559

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
           D+ +  +         + +  L
Sbjct: 560 DIPISCLQKEIPELLEDLQKRL 581


>gi|154309169|ref|XP_001553919.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|150852522|gb|EDN27714.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 588

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 146/442 (33%), Gaps = 68/442 (15%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADL 79
            +++L+  MI  ++   G +   P      + +    + +       E S P  L S  L
Sbjct: 69  QEVVLKAEMIEYYNEISGFFILRPQSMFIWNQIRNWFQAKIETLDVEEASFPMFLSSKSL 128

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 129 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 188

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT   +     ++   Y  ++    L ++P+
Sbjct: 189 NSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEALAGEEVLQILEFYAGVYEE--LLAVPV 246

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +           +                
Sbjct: 247 ----------------VRGRKTEKEKFAGGYYTTTV-----EGYIPSNGRGIQGATSHCL 285

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
               S + +  + D  P+N      G + GH+                        V   
Sbjct: 286 GQNFSKMFDITVEDPTPKN------GEKAGHLH-----------------------VWQN 316

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKI 368
           S+G+ + RV+  ++    D KG++ P  +A  +  ++ +               D  + I
Sbjct: 317 SWGL-STRVIGVMVMIHGDDKGLVLPPRIAKLQAIIVPVGITNKTTPEEKAKRYDELQNI 375

Query: 369 YARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L K G    +D         +F   +L G PL++  G +  +   V    R TG + 
Sbjct: 376 KDTLKKSGVRADYDIRDGYTPAWKFNDWELKGVPLRLEYGPRDAAQGVVSYARRDTGEKG 435

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
            +++  +           +  L
Sbjct: 436 TIAIANLSTEVPALLETIQSSL 457


>gi|240144358|ref|ZP_04742959.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203608|gb|EEV01893.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291540831|emb|CBL13942.1| prolyl-tRNA synthetase, family I [Roseburia intestinalis XB6B4]
          Length = 479

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 151/449 (33%), Gaps = 77/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  R AE+  +             KG     P G    +N+   +     
Sbjct: 14  MEEDFAQWYTDVVRKAELIDYS----------SVKGCMILRPAGYAIWENIQHELDRRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     ++  + +   PT E +  D 
Sbjct: 64  ETGVENVYLPLFIPESLLEKEKDHVEGFAPEVAWVTYGGLNQLPERLCVRPTSETLFCDF 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +++ I+SYR+LP  + Q     R E         +R FL    + +              
Sbjct: 124 YKNIIQSYRDLPKVYNQWCSVVRWEKE-------TRPFLRSREFLWQ------------- 163

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                         H     A+  E +     +           
Sbjct: 164 ----------------------------EGHTAHATAEEAEQRTVQMLNVYA-------- 187

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           DF + +    +V          +        ++L  +     + ++ G    FG  ++  
Sbjct: 188 DFCEEVLAMPVVRGQKTEKEKFAGAEATYTIEALMHDG----KALQSGTSHNFGNGFAKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   D K  YV   S+G+   R++ A+I    D  G++ P  +AP +  +I I+  
Sbjct: 244 FGIQYTDKDNKLQYVYQTSWGMT-TRLIGAIIMVHGDDSGLVLPPRIAPVQAMVIPIQQQ 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++  R+ KV C    DD  +  G +F+  ++ G P+++ +G K ++  K  
Sbjct: 303 KDGVLDTAKEVCERIGKV-CRAKLDDSDKSPGWKFSEQEMRGIPVRIELGPKDIAAGKCV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
              R T  + +++L+E+           +
Sbjct: 362 AVRRDTREKIEIALDELEAKLPELLEQIQ 390


>gi|114572709|ref|XP_001172362.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 1 [Pan
            troglodytes]
          Length = 1279

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 141/455 (30%), Gaps = 77/455 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 784  EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 843

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 844  YFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 903

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   +
Sbjct: 904  HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEEV 953

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 954  LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 985

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+ G   + G  +S      F+ 
Sbjct: 986  GDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFED 1025

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IK 355
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         +
Sbjct: 1026 PKIPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSE 1084

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C     RL +V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1085 EDKEALIAKCNDYRRRLLRVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1144

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +     R TG +  ++  E          + +  L
Sbjct: 1145 QFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1179


>gi|226304250|ref|YP_002764208.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|226183365|dbj|BAH31469.1| putative threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 406

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 147/435 (33%), Gaps = 52/435 (11%)

Query: 21  ASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R             G+  WLP G    + +     E+  R+G   +  P +  
Sbjct: 3   VDHRELGRDLEFFATTPIVGAGLPLWLPDGAVIRNELEKFAAEQAARSGCQGVYTPVMAK 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +  + ++M        ++ +  P +      +F +  +SYR LPF   ++ 
Sbjct: 63  KELYERSGHWSKFSEDMFPEMKIGGESFLLRPANCPHHAQVFAARGRSYRELPFRVRELG 122

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR EL     G+ R R+  + DA+ F  + E  +        +  R +  LG+     
Sbjct: 123 SMFRSELSGVLSGLSRVRQINLDDAHVF-CSREQVQAEVIVALDAIERCYSTLGIAERKY 181

Query: 196 RAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           R      GG+     + E    A+        ++                          
Sbjct: 182 RLSIR--GGEGQYLGTDEQWADAEDHLRGALNARSIEYVEAKG----------------- 222

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                A      + ++ D+    + +S   ++                  +   DG K  
Sbjct: 223 ---EAAFYGPKIDVQVRDAHGREETLSTVQLDFNQPER--------FDLEYTAEDGSKVR 271

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G+M  + A++    +G     P  +AP ++S++ +    QV     E++ A
Sbjct: 272 PVMIHRGLLGSMERMTALLIERFEG---RMPPWLAPNQVSILPVGDRHQV---EAERLRA 325

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH--RLTGIRED 428
            L      V        +G +   A     P   ++G   V    V++    R   +  D
Sbjct: 326 DLEARDVRVAI-APDGSLGRRIREARTHRDPYIAVIGDNEVHGGTVDVLVPARGGRVVVD 384

Query: 429 MS--LEEVINYASHR 441
            S  + +V++    R
Sbjct: 385 ASVFVAQVVSGIKER 399


>gi|13508292|ref|NP_110242.1| threonyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2501059|sp|P75225|SYT_MYCPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1673960|gb|AAB95937.1| threonyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|301633413|gb|ADK86967.1| threonine--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 564

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 145/407 (35%), Gaps = 37/407 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            Q+   D      +L + T        G   WL  G      +   +  +Q   G   +S
Sbjct: 161 EQKYQNDHRAIGKRLEIFT-FDPLVGAGFPIWLEKGAVLKKIIGDFVHYQQLMFGFKTVS 219

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P L + +L+  SG Y  Y ++M       ++ M+  P        IF+   +SY+ LP 
Sbjct: 220 SPVLANLELYKISGHYVHYSEDMFPSVKLENQMMMLRPMTCPHHCLIFKHKRRSYKELPQ 279

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +  +  R E      G+ R R   + D + F  T +  K      F     + ++ G
Sbjct: 280 RFCEDSILHRFEASGGLTGLERVRCMTLLDNHIFCRT-DQIKAEIKNAFKLIQTVNNKFG 338

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSI 248
                +                 L D      F   D +     S+  + F ++     I
Sbjct: 339 FSFDRIDL--------------ALHDPNNKAKFIDNDQLWANSESQIESVFKELNVPYKI 384

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D   +   +     K ++   I++   F    ++       +      
Sbjct: 385 DVGAAAFYGPKIDFQFKTALN-----KMITIATIQL--DFLLPERF----ELRYFDEQSN 433

Query: 309 DHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                +   GI     R +AA++E +H G   +W   +AP ++ +I +         A +
Sbjct: 434 AQTPVIIHVGIVGTYERFIAALLEKTH-GNLPLW---MAPVQVVVIPVNI--DKHEKAAK 487

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           K+Y +L K    V  D+  +++G +   A +   PLQ+IVG K + D
Sbjct: 488 KLYQKLLKENIRVSLDESEDRLGKKVRTAIVNKIPLQIIVGDKEMQD 534


>gi|315641198|ref|ZP_07896275.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315482965|gb|EFU73484.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 556

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 127/221 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P +A++ SH+L++R G I Q + G+Y++LPL Q+ +  + AII++E
Sbjct: 1   MKQSHLLVPTLRETPSEADVRSHQLLVRAGYIRQIATGVYAYLPLAQRVMKKITAIIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM +P +   D W +          +  ++DRN +  +  P+ E+   ++ R+
Sbjct: 61  LDAIGANEMQMPNILPMDYWQDDACRRLCTSSLFEVSDRNQRQYMLAPSQEKAFIELVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+Q+K+RDE +P+FG + SREFLM D YSF       + +Y ++  S
Sbjct: 121 EVQSYRKLPLKLYQVQMKYRDEKKPKFGFLYSREFLMTDFYSFHAGAVSLEQTYQQVESS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
              I  R GL    +   +  +G +   EF+ LA  G+ Q+
Sbjct: 181 IKTILARCGLTYHLVLGHTNRVGIEKVKEFMALASFGDEQL 221



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 9/233 (3%)

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S E  V+ADT    +     + D         +  +   +      ++          + 
Sbjct: 326 SPEITVIADTYLQDLTNMTCYADEE------GYLYLNVNSPRDFHISSYSDFRMVQEGDL 379

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           + D   E      +G+++GH+     +YS  +SA F    G+    ++    IG  R+++
Sbjct: 380 MLD--GEETLRIEKGLKIGHMMTMSKEYSQALSAQFIDETGQAVPTRICYCSIGVSRLLS 437

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++E   D   I WP++VAPF   ++ I   D   +   ++I  ++ +   +V  DD  E
Sbjct: 438 LIVEQHCDENKIQWPNTVAPFDAHVVPIDYQDSDQQQLTDEIVEQMEQAEYEVLLDDRVE 497

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + G +FA ADL+G P+++ +G K   +  VEIK   +G   ++  EE++   +
Sbjct: 498 RAGVKFADADLIGCPIRITIGKK-AKEGIVEIKLHQSGDSLEIRKEELVATLA 549


>gi|242768112|ref|XP_002341505.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218724701|gb|EED24118.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 641

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 4/236 (1%)

Query: 2   RRSKYFLPI--LQENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P   ++    +      + L++R G I Q   GI+  LPLG +  + + A+I 
Sbjct: 42  RVSNFWIPTGGIERKAAETVKEDANDLLIRAGFIRQAYSGIFHMLPLGLRVQNKLEALID 101

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 GA ++S+ +L S +LW ++GR    G E+ +  DR +   +  PTHEE +T + 
Sbjct: 102 RHMESLGASKVSLSSLSSQELWEKTGRL-KSGSEVFKFNDRKESRFLLAPTHEEEITSLV 160

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S + SY+ LP   YQI  K+RDE RPR G++R REF+MKD Y+FD   E +  +Y    
Sbjct: 161 ASLVNSYKELPLRLYQITRKYRDEARPRQGLLRGREFVMKDLYTFDYNAEQALATYEATR 220

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +Y RIF  L +  +   A+SG +GG+LSHEF  ++D GE  +             
Sbjct: 221 EAYKRIFDTLKVPYLVAAADSGNMGGNLSHEFHFISDKGEDTLISCSHCDYVYNEE 276



 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 21/197 (10%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADG-KD 309
           +        E        +E+GH FY GT+YS  + A                 ++  ++
Sbjct: 447 DGDKCHKCSEGSLHMHNAVELGHTFYLGTRYSEVLKAKVFVDNSVIKSNESSTNSNKSQN 506

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             ++MG +GIG  R+++AV ++  D +G+ WP ++APF+I ++  +  +       E IY
Sbjct: 507 VPMEMGCHGIGVSRMISAVADARSDIRGLNWPRAIAPFEIIVVPARNLEPE----AENIY 562

Query: 370 ARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIR 426
             L +     D+  DD  +Q+G +   ADL+G+P+ +++G  + S+ KVE+  R L G+R
Sbjct: 563 DLLRQHTDTSDIILDDRTKQVGWKLKDADLIGYPIVIVLGKAWKSEHKVEVHCRQLDGLR 622

Query: 427 EDMSLEEVINYASHRFS 443
           ED+ L  ++ Y     +
Sbjct: 623 EDVPLGNLVEYVRSLLA 639


>gi|156049881|ref|XP_001590907.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154693046|gb|EDN92784.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 576

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 148/442 (33%), Gaps = 68/442 (15%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADL 79
            +++L+  MI  ++   G +   P      + +    + +       E S P  L S  L
Sbjct: 69  QEVVLKAEMIEYYNEISGFFILRPQSMFIWNQIRNWFQAQIETLDVEEASFPMFLSSKSL 128

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 129 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 188

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 189 NSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEELAGEEVLQILEFYAGVYEQ--LLAVPV 246

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +           +                
Sbjct: 247 ----------------VRGRKTEKEKFAGGYYTTTV-----EGYIPSNGRGIQGATSHCL 285

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
               S + +  + D  P+N      G + GH+                        V   
Sbjct: 286 GQNFSKMFDITVEDPTPKN------GEKAGHLH-----------------------VWQN 316

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKI 368
           S+G+ + RV+  ++    D KG++ P  +A  +  +I +               D  + I
Sbjct: 317 SWGL-STRVIGVMVMIHGDDKGLVLPPRIAKLQAIIIPVGITNKTTPEEKAKRYDELQSI 375

Query: 369 YARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L K G    +D         +F   +L G PL++  G +  +   V    R TG + 
Sbjct: 376 KDTLKKAGVRADYDIRDGYTPAWKFNDWELKGVPLRLEYGPRDAAQEVVSYARRDTGEKG 435

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
            +S+  +           +  L
Sbjct: 436 TISIANLSTEIPALLETIQSSL 457


>gi|213416593|ref|ZP_03349737.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 223

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 17  DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 76

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 77  KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 136

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E
Sbjct: 137 SFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIE 196

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +   ++++Y      
Sbjct: 197 YKYRRSGEKSLIKTGDIVDYLVKAIK 222


>gi|322707504|gb|EFY99082.1| threonyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 563

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/467 (16%), Positives = 152/467 (32%), Gaps = 90/467 (19%)

Query: 13  ENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + P   E   H+ +       +   +S G   +LP G +  + +   IR++  R G  E+
Sbjct: 104 QKPEKREPPDHRKIGLQQELFITSAYSPGSPIFLPNGARIFNRLIDFIRKQYARYGFQEV 163

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------------------RNDKAMI 105
             PT+    LW +SG  ++Y  +M  +                            D    
Sbjct: 164 ITPTIYKKALWAKSGHLENYADDMYTVTGNTSTPDKDGGGCCGGDHGPAEPDLEADNEYG 223

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFD 164
             P +      IF S + SYR LP  +       R+E+     G+ R R F   D + F 
Sbjct: 224 LKPMNCPGHCLIFASRVHSYRELPVRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIF- 282

Query: 165 LTPEGSKHSYNKMFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             P   +    K       ++   RLG+    +   + P    +  E     +  E ++ 
Sbjct: 283 CRPSQVEEEIKKTLDFVKVVYGVLRLGVGYR-LALSTRPKDHFIGTED--EWNRAEDRLK 339

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +                 + S            A      +  + DS  +  + +   +
Sbjct: 340 MA-----------------LDSSGMEWSINEGDGAFYGPKIDIVIKDSDGKEHQTATIQL 382

Query: 283 EVGHIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +    F    +++L   A                     G    V +    +G++  + A
Sbjct: 383 D----FQLPKRFALEYQAPAPEYEARGETTNDPVLLAEYGPVRPVMIHRAVLGSVERLMA 438

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV------------ 375
           ++  S+DGK   WP  + P +  ++ +    +   D  +++   L  +            
Sbjct: 439 LLIESYDGK---WPFWLNPRQAIILTVNT-SRPVLDWADEVKEILLGLKKEAGQTSTEGP 494

Query: 376 ----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               G  V  D     +GS+   A + G+   ++VG + V   +V +
Sbjct: 495 VNPTGLAVDVDYSARSLGSKIREARINGYSQILVVGEEDVKHGQVSL 541


>gi|311898556|dbj|BAJ30964.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 470

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 159/462 (34%), Gaps = 84/462 (18%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P  ++ PR        AE+A +  +  T +I           P G    + +
Sbjct: 1   MAKAPVLTPQAEDFPRWYQDLINKAELADNGPVRGTMVIR----------PYGYGLWERM 50

Query: 54  NAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGP 108
              +     + GA     P       L  E+   + +  E+  +        ++ ++  P
Sbjct: 51  QQEMDARIKKAGAQNAYFPMFIPQSYLTKEAEHVEGFAPELAVVTHGGGKELEEPVVVRP 110

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T E ++ + F   ++S+R+LP    Q     R ELRP       R FL    + +     
Sbjct: 111 TSETIINEYFSKWVQSHRDLPLLINQWANVVRWELRP-------RVFLRTTEFLWQ-EGH 162

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +  +Y                     RA +  I  D+  +F+     G   V   K   
Sbjct: 163 TAHATYED------------------ARAYASRIHTDVYGDFMTNV-LGIDVVLGRKTAK 203

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +    + NT   +                                      + +++G   
Sbjct: 204 ERFAGAINTLTLE--------------------------------GMMGDGKALQMGTSH 231

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G  ++   + T++    +  +V   S+G+ + R+V  +I S  D  G+  P  +A  +
Sbjct: 232 ELGQNFAKAFNTTYQLQGAEREHVWQTSWGV-STRMVGGLIMSHGDDNGLRVPPRLAAVQ 290

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVG 407
             ++ IK  D        +I A+L   G  V  DD  +   G +    +L G PL++ VG
Sbjct: 291 AVVLAIKGED-AVLAKVREIGAQLEAAGVRVVVDDRTDTPFGRRAVDWELKGVPLRIEVG 349

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + +      +  R+ G +E +S++ +          ++  L
Sbjct: 350 PRDLEAGTAMLVRRIAGGKEPVSVDSLAAIVPGILEEDQAQL 391


>gi|73951035|ref|XP_857273.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 5
           [Canis familiaris]
          Length = 687

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 112/334 (33%), Gaps = 34/334 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +   ++   +A+   H+ + +       H  S G   +LP G    + +   IREE +R
Sbjct: 383 MMKTWEKFQEEAKNRDHRKVGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHR 442

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + ++ LW  SG +  Y + M    D         P +      +F    +
Sbjct: 443 RNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAHRPR 501

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R +P       +  R+EL     G+ R R F   DA+ F  T E  +           
Sbjct: 502 SWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTVEQIEEEIKGCLQFLQ 560

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P       E    A+                 P +       
Sbjct: 561 SVYSTFGFSF-QLNLSTRPENFLGEVELWDEAEKQLQNSLVEFGKPWKMNPGDG------ 613

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + K+ D++    + +   ++    F    +++L     F
Sbjct: 614 --------------AFYGPKIDIKIKDAIGRYHQCATIQLD----FQLPIRFNLTY---F 652

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              D K + V +    +G++  + A++  ++ GK
Sbjct: 653 DDGDDKRNPVIIHRAILGSVERMIAILSENYGGK 686


>gi|325958767|ref|YP_004290233.1| prolyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325330199|gb|ADZ09261.1| Prolyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 469

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 173/452 (38%), Gaps = 84/452 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    AEI                KG++ WLP G K   +   I++   +
Sbjct: 4   FSEWFHNILEE----AEIIDT---------RYPVKGMHVWLPQGFKIRKHTLEILKTILD 50

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
           +    E+  P L    +L  E+     + +E+  +        +K +   PT E  M  +
Sbjct: 51  K-DHEEVMFPLLIPEDELAKEAIHVKGFEEEVYWVTHGGLTELNKKLALRPTSETAMYPM 109

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++++ +LP  +YQ+   FR E +    ++R R     +  +F              
Sbjct: 110 FSLWVRNHSDLPMRYYQVVNTFRYETKHTRPLIRVR-----EITTF-------------- 150

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        +H     A+  E QV  +             
Sbjct: 151 ---------------------------KEAHTVHSSAEETEEQVKEALRIY--------- 174

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                   +S+   +T       D     L+    +      + +++G +   G  ++  
Sbjct: 175 ----RQFFDSLGIPYTVSKRPEWDKFPGALYTMAFDTLLPDGKTLQIGTVHNLGQTFAKT 230

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--K 355
              T++ A+G   YV    YG+ + RV+A++I    D  G+  P  VAP+ + ++ I  K
Sbjct: 231 FDITYETAEGNHEYVYQTCYGL-SDRVIASLIGIHGDDSGLCLPPDVAPYHVVIVPIIFK 289

Query: 356 AHDQVCRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +V  D C+K+  +L  ++   V++DD   + G ++   ++ G PL++ VG + + + 
Sbjct: 290 KGGEVVIDFCKKLQEKLESELNLRVYFDDRDIRAGKKYYEWEMRGIPLRLEVGPRDIENH 349

Query: 415 KVEIKHRLTGIREDMSLEE--VINYASHRFSN 444
           K+    R +  +E +  ++  +    ++   N
Sbjct: 350 KIVTFRRESKEKEIIDYDDTTISKTVNNLLDN 381


>gi|330930995|ref|XP_003303228.1| hypothetical protein PTT_15359 [Pyrenophora teres f. teres 0-1]
 gi|330938329|ref|XP_003305730.1| hypothetical protein PTT_18645 [Pyrenophora teres f. teres 0-1]
 gi|311317156|gb|EFQ86197.1| hypothetical protein PTT_18645 [Pyrenophora teres f. teres 0-1]
 gi|311320895|gb|EFQ88675.1| hypothetical protein PTT_15359 [Pyrenophora teres f. teres 0-1]
          Length = 529

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 129/228 (56%), Gaps = 1/228 (0%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     ++    +  SH L++R G + Q   G++  LPLG +  + +  +I +  N  GA
Sbjct: 8   FHVTYNQSANSHQDESHSLLVRGGFLRQAHSGVFHLLPLGLRVQNKLEGLIDKHMNSIGA 67

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            ++S+ ++ +  LW +SGRY S   E+LR+ DR +   +  PTHEE +T +  S + SY+
Sbjct: 68  SKVSLSSITTEALWQQSGRY-SANSELLRIKDRRESGFLLSPTHEEEITALVASMVHSYK 126

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +LP   YQI  K+RDE RPR G++R++EF+MKD Y+FD +P+ +  +Y  +  +Y  +F+
Sbjct: 127 DLPLRLYQIGRKYRDERRPRGGLLRAKEFVMKDLYTFDSSPKAALETYESVRQAYNNLFN 186

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            L L  +   A+SG +GG LSHE+   +  GE  VF  +         
Sbjct: 187 ELKLPYLVADADSGNMGGKLSHEYHFASPKGEDYVFSCQSCDYVANEE 234



 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 7/184 (3%)

Query: 267 LFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAM 322
             D  P     K    + IEVGH F+ GT+YS+P++A     D        MG +GIG  
Sbjct: 346 PGDPCPRCSTGKLNIQKAIEVGHTFHLGTRYSVPLNAVIALPDQNLSSPTHMGCHGIGVS 405

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFK-ISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           R++ AV     D +G+ WP  +AP++ I L + K  ++   +  + ++        D+  
Sbjct: 406 RIIGAVASLLSDARGLNWPRVIAPYEAIVLSDPKTEEKDTTEVYDALHGEGRNSDIDLVL 465

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           DD  G+ +G +   ADL+G+P+ V++G +   D +VEI+ R  G+++D+ L E+      
Sbjct: 466 DDRAGKSLGWKLKDADLIGYPVVVVMG-RSWKDKRVEIQCRRLGVKKDVELNELRTEVVA 524

Query: 441 RFSN 444
               
Sbjct: 525 LLEQ 528


>gi|300712094|ref|YP_003737908.1| prolyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299125777|gb|ADJ16116.1| prolyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 482

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 148/439 (33%), Gaps = 78/439 (17%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E  R A++A +  M           G     P G    + +   +      TG      P
Sbjct: 23  EVVRKAKLADYAPMG----------GFIVTRPRGYALWEAIQDRLDGWFKETGVQNAYFP 72

Query: 73  TLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
                  L  E    + +  E+  +     D  ++ +   PT E ++       ++S+R+
Sbjct: 73  LFIPESYLEREKDVVEGFDPEVAWVTQGGHDELEERLAVRPTSESIIAPFLSQWVRSHRD 132

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    Q     R E        R++EFL ++ ++     + +          Y +++  
Sbjct: 133 LPLRVNQWCSVVRWEATETKPFFRTKEFLWQEGHTAHRDHDDAWDETMLRLEQYEQVYED 192

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +   +IP+       G    H+    ADT  T                            
Sbjct: 193 V--LAIPVMR-----GRKPEHDKFPGADTTTT---------------------------- 217

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A   D  + +   S             +G  F      +     T+   D 
Sbjct: 218 -------VEALMPDGKSVQGGTSHH-----------LGQSF------AEAFDITYVDEDE 253

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDAC 365
           ++      S+G+ + R + A+I +  D +G++ P +VAP ++ ++ I   +  +   +  
Sbjct: 254 EETVAHTTSWGL-SWRAIGALIMTHSDDQGLVLPPTVAPEQVVIVPIWQEENREEVLEYS 312

Query: 366 EKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E I   L + G  V  DD  E+  G +F   +LLG PL++ +G   V D +V   HR   
Sbjct: 313 EGIADDLEEAGFRVELDDRDERNPGFKFNEWELLGTPLRLEIGPHEVEDGEVTAVHRPDS 372

Query: 425 IREDMSLEEVINYASHRFS 443
            +     E ++        
Sbjct: 373 EKSVEGREGIVEAVEGHLE 391


>gi|226227159|ref|YP_002761265.1| prolyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226090350|dbj|BAH38795.1| prolyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 489

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 150/426 (35%), Gaps = 77/426 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+LR+ +      +G     P G    + +   + +    TG +    P         
Sbjct: 19  NELVLRSELADYSPVRGCMVIRPWGYGIWERMQRALDDMFKATGHVNAYFPLFIPESFLS 78

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+   + +  E   +        ++ ++  PT E ++  +F   ++SYR+LP  + Q  
Sbjct: 79  KEAEHVEGFAPECAVVTMGGGKQLEERLVVRPTSETIIYSMFAKWVQSYRDLPLLYNQWA 138

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E+R R   +R+ EFL ++ ++   T + ++    +M   Y               
Sbjct: 139 NVVRWEMRTRL-FLRTMEFLWQEGHTAHATHDEAEEETRRMLGVY--------------- 182

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                  + F  +      I  + TD +                
Sbjct: 183 -----------------------RTFMEEYMAMPVITGQKTDAEKFAGALRTYCTEAM-- 217

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                                  + ++ G     G  ++     TF+   G+  +    S
Sbjct: 218 -------------------MQDNKALQAGTSHNLGQNFAKAFDLTFQNEAGQQDHAWNTS 258

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARL- 372
           +G+ + R++  ++ +  D  G+  P  +AP ++ ++ I   D+      +A ++I   L 
Sbjct: 259 WGV-STRMIGGLVMTHSDDAGLRLPPRLAPTQMVIVPIWKTDEERAATIEAAKRIAEDLG 317

Query: 373 -----SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                      V  D+  G + G+++   +L G PL++ +G + ++ S   +  R T  +
Sbjct: 318 SFKRPDHERIRVHVDERVGIKPGAKYYHWELRGVPLRMEIGPRDLASSSGMLVRRDTREK 377

Query: 427 EDMSLE 432
             ++ +
Sbjct: 378 RSIAFD 383


>gi|296820624|ref|XP_002849971.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238837525|gb|EEQ27187.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 520

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 147/434 (33%), Gaps = 54/434 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
             A +A H+ +     +     +S G   + P G   L+ + + +R +  + G  E+  P
Sbjct: 51  ASATLADHRALGTAQELFTNSIYSPGSPLFRPNGTHILNKLISFLRAQYRQYGFREVLTP 110

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADR-------NDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +    LW  SG + +Y  +M  +  R        D+     P +      +F+S   SY
Sbjct: 111 NIYKQSLWEVSGHWQNYKDDMYEVGGRGNTAEATEDETYGLKPMNCPGHCLLFKSQKHSY 170

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  +       R+E+     G+ R R F   D + F   P                +
Sbjct: 171 RELPVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIF-CRPGQIGGEIQLALKFADTV 229

Query: 185 FHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
               GL     +   + P                E       +  +          DD  
Sbjct: 230 LQTFGLADGYRLVLSTRP----------------EKDFIGCLEQWENAEQQLRQALDDSG 273

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D+  +   DS  +  ++S   +++     F  +Y +P  +   
Sbjct: 274 LSWELNEGDGAFYGPKIDLQIQ---DSQGKYHQLSTIQLDMNLPQRFELEYLVPEGSEEY 330

Query: 304 GA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQV 360
                G+   V +     G++    A++   + G+   WP  ++P +  L+ +    +Q 
Sbjct: 331 DPATGGRATPVLIHRAIFGSLERFFALLIERYSGQ---WPFWLSPRQAILLTVGKGLEQA 387

Query: 361 CRDACEKI-------YARLSKVG---------CDVFWDDMGEQIGSQFAVADLLGFPLQV 404
             D   KI        +R SK G          +V  D     +  +   A    + L  
Sbjct: 388 AEDVVAKISGFEPITASRPSKSGLPLSPLQPTFNVDLDLASRSLPKKIHDAHTARYNLVF 447

Query: 405 IVGSKFVSDSKVEI 418
           I+G K +++  V+I
Sbjct: 448 IMGPKNLANGSVDI 461


>gi|312087334|ref|XP_003145431.1| hypothetical protein LOAG_09856 [Loa loa]
 gi|307759406|gb|EFO18640.1| hypothetical protein LOAG_09856 [Loa loa]
          Length = 528

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 150/436 (34%), Gaps = 74/436 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  MI  +   G Y   P      + +     EE  + G      P   S   L  
Sbjct: 68  QVITKAEMIEYYDISGCYVLRPWSYAIWEFIQEWFDEEIKKLGVKNCYFPLFVSQSALER 127

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +         +A+   PT E VM   +   ++S+R+LP    Q   
Sbjct: 128 EKTHISDFAPEVAWVTRAGQSDLAEAIAIRPTSETVMYPSYAKWVQSHRDLPIKLNQWCN 187

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++   T   ++            +F  L L       
Sbjct: 188 VVRWEFKHPTPFLRTREFLWQEGHTAFQTKTEAED----------EVFKILDL------- 230

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                                    + D++++  I  + T    
Sbjct: 231 -------------------------------------YAQIYTDLLAIPVIKGRKTEKEK 253

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGS 316
                    +   +P N     RGI+     + G  +S   + +F+  +G    +V   S
Sbjct: 254 FAGGEFTTTVEAYVPING----RGIQGATSHHLGQNFSKMFNISFEDPNGSGKVHVWQNS 309

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-----KAHDQVCR--DACEKIY 369
           +G+ + R + A++    D  G++ P  VA  ++ ++ +        +Q     +  ++I 
Sbjct: 310 WGL-STRTIGALVMIHGDNYGLVLPPKVAAIQMIIVPVGITAQTKDEQKVALIEKAKEIN 368

Query: 370 ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L         D       G +F   +L G P+++ +G K +++S+V    R +G +  
Sbjct: 369 DVLVNASIRAELDVRDNISSGWKFNHWELKGIPVRIEIGPKDLANSQVTCVIRYSGEKRI 428

Query: 429 MSLEEVINYASHRFSN 444
           + ++ +     +    
Sbjct: 429 IPMDGLATKCKNMLDE 444


>gi|262043503|ref|ZP_06016623.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039149|gb|EEW40300.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 530

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 104/326 (31%), Gaps = 38/326 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
            SK  L    E   +AE   H+ + R         ++ G   W P G     ++ A +R 
Sbjct: 235 ASKKQLDGWLEKTAEAEKRDHRKLGRELDLFHFQDNAPGAVFWHPRGWTIFQSLIAYMRS 294

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G +E++ P +    LW  SG +D+Y   M      + +     P +      +F+
Sbjct: 295 RHEVAGYVEVNTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFK 354

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             IKSYR+LP    +     R E      G++R R F   DA+ F  T +  +     + 
Sbjct: 355 YGIKSYRDLPVRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIF-CTLQQVEGECKSIL 413

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I+ + G + + ++  + P     S       +   +    ++       P E   
Sbjct: 414 QLVLDIYKQFGFEEVAIKLSTRPEKRMGSDADWDRLENALSASLEAQGLQWSVNPGEGAF 473

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
           +   +                               +    R  + G         +LP 
Sbjct: 474 YGPKLEF---------------------------VLRDAIGRDWQCGT---LQVDMNLPE 503

Query: 298 -MSATFKGADG-KDHYVQMGSYGIGA 321
                +   DG     V +     G+
Sbjct: 504 RFDIGYIAEDGSTKRPVMLHRALFGS 529


>gi|237756770|ref|ZP_04585264.1| prolyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691073|gb|EEP60187.1| prolyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 162

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/162 (51%), Positives = 114/162 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+F+P L+ENP DA + SH  ++R G I   S GIY +LPLG + L  +  IIR+ 
Sbjct: 1   MLASKFFMPTLKENPSDAVVPSHIYLVRGGFIRSLSAGIYEYLPLGLRVLRKIENIIRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+ +P L  A+LW E+GR+  YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDDSGALEVLLPILTPAELWKETGRWYVYGKELFRLKDRKDAEFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YS
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYS 162


>gi|213407904|ref|XP_002174723.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212002770|gb|EEB08430.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 464

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/472 (13%), Positives = 147/472 (31%), Gaps = 58/472 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +K+     +    D    + +  L T  I+  S G   +LP G + ++++   +R +  
Sbjct: 25  ATKWTNSAEKIKFEDHRSIAARQKLFT--INHLSPGSIYFLPHGTRIINSITNFLRTQYE 82

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-------MIYGPTHEEVMT 115
             G  E+  P +   +LW  SG    Y + M  +   ++             P +     
Sbjct: 83  VLGFKEVITPLIYKPELWKRSGHLSKYKENMFFVTSEHNSEDQKDSSSFGLKPMNCPAHC 142

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSY 174
            +F    +SY+ LP  F       R E      G+ R R F   D + F    +      
Sbjct: 143 LLFAEEERSYKELPLRFADFSTLHRYEASGALSGLTRLRSFHQDDGHIF-CRRDQVYAEI 201

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            K  +   + +    +  +     + P       +    A+    +V             
Sbjct: 202 QKDLLFIKKFYALFHMNDLTFHLSTRPTDYIGEADQWDHAERILEKVLTESGMNW----- 256

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                          ++     A      +  + D+   +++ +   ++    F    ++
Sbjct: 257 ---------------KRKVGDGAFYGPKIDVHVRDTYGRSQQTATIQLD----FQLPKRF 297

Query: 295 SLPMSATFKGA---DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            L               +  V +    +G++     ++    +GK   WP  ++P    +
Sbjct: 298 QLRFRTEHGDNRLLQQYECPVLIHRAVLGSLERFLGILIEHLNGK---WPFWISPRHAII 354

Query: 352 INIKAHDQVCRDACEKIYARLS------KVG--------CDVFWDDMGEQIGSQFAVADL 397
           + +  + Q      +++   LS      + G          V  D     +G +   A  
Sbjct: 355 LTLNQN-QDVMAYAKEVQKTLSLNNRSFQAGLLPLNTFVFHVDLDCNAAPLGRRLNEARK 413

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L +  ++++G+K   +  + +  R +     M +          F N    L
Sbjct: 414 LDYNYEIVIGTKETENHTLAVSERGSNANRRMIM--TPELLREMFENRMQSL 463


>gi|300790769|ref|YP_003771060.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299800283|gb|ADJ50658.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 390

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 143/435 (32%), Gaps = 51/435 (11%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L  G       G+  WLP G     ++   +R  + R G   +  P L  
Sbjct: 3   DHRKLGRELGLF-GTDPLIGAGLPYWLPDGAIVRHSLEEYVRNLERRAGYQHVHSPVLGK 61

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +  Y  EM    D   + ++  P+       I+RS  +SYR LP    +I 
Sbjct: 62  RELYEISGHWSHYRDEMYPPMDVGGEQLVLRPSLCPHHALIYRSRGRSYRELPLRMAEIG 121

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             +R EL     G+ R R   + DA+ F  T +  +           R +  LG+     
Sbjct: 122 GMYRSELSGVLGGLSRVRAIQLNDAHVF-CTLDQVEAEAAAALALIRRAYDALGISPARY 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           R      GG         A      V     +      +                     
Sbjct: 181 RLSLPGPGGKYVPGNWAGAVEILRSVLDDLPYDAAEGEA--------------------- 219

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            A      + ++ D       +S   ++      FG +Y         GADG  H   M 
Sbjct: 220 -AFYGPKIDVQIADGAGRESTLSTVQVDFHQPARFGLEY--------VGADGAKHRPVMV 270

Query: 316 SYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              I     R VA +IE      G  +P  +AP ++ L+ +     V      ++   L 
Sbjct: 271 HRSIIGSVERAVAQLIEVH----GGAFPAWLAPVQLRLLPV---SAVEVPYAREV---LE 320

Query: 374 KVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G            +G++     L   P Q ++G   V+  ++ ++ R     +    E
Sbjct: 321 RCGDVRAEI-ASEGSLGARIRDGRL--VPYQAVIGPAEVAAGQLSVRLRDGRRLDAAGAE 377

Query: 433 EVINYASHRFSNNRP 447
           E++          RP
Sbjct: 378 EMLARIGAEV--RRP 390


>gi|167043404|gb|ABZ08106.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_APKG1C9]
          Length = 506

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 159/440 (36%), Gaps = 90/440 (20%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-------- 84
               KG+  W P G KA+  ++ + R +  RTG  E + P L   DL  +          
Sbjct: 34  RYPIKGMDVWKPYGWKAMTLIDGLTRSQMRRTGHEEYNFPLLVPEDLLDKENQLVSHLKA 93

Query: 85  -----------RYD----SYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSY 125
                      R D     + KE+  +    D      M   PT E  M  +F   I+S+
Sbjct: 94  SRDTGIDASELRVDEEEAGFKKEVYWVKHGGDTELEVPMFLRPTSETPMYTMFSLWIRSH 153

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            +LP   +QI   FR E +     +R RE    +A++     +G+     +      R+ 
Sbjct: 154 ADLPLKTFQIVNTFRYETKQTRSFIRVREIHFFEAHTVHADQDGATAQIAEDAEIVQRLL 213

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                                 HE    A         SK       P            
Sbjct: 214 ----------------------HELCFPA-------IVSKRPSWDTFPGAW--------- 235

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                            H+  +   +P       R ++V    ++  +++   + T++  
Sbjct: 236 -----------------HSTAVDAVMPNG-----RTLQVATYHHYRDQWARAFNLTYEDR 273

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDA 364
           +G+  +    ++G+ + R++ A++    D  G+I P S+AP ++ L+ + AH D+     
Sbjct: 274 NGETQFCHQTTFGM-SERLLGAIVGMHGDDSGLIMPPSIAPIQVILMPVAAHSDENVIPR 332

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E +   L   G  V  D    + G++    ++ G P+++ +G + ++ S+  I  R TG
Sbjct: 333 VEALALDLQDSGFRVQVDARDLRPGTKHYDWEIKGVPIRLEIGPRDLASSQCTITLR-TG 391

Query: 425 IREDMSLEEVINYASHRFSN 444
            + +  LE + +       +
Sbjct: 392 GKIESPLEGISSTIRQYLDS 411


>gi|149743790|ref|XP_001488980.1| PREDICTED: glutamyl-prolyl-tRNA synthetase isoform 1 [Equus caballus]
          Length = 1512

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 137/437 (31%), Gaps = 75/437 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWV 81
            +++ ++ MI  +   G Y   P      +++      E  + G      P   S   L  
Sbjct: 1030 QVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEK 1089

Query: 82   ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +         + +   PT E VM   +   ++S+R+LP    Q   
Sbjct: 1090 EKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCN 1149

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ +S          ++     +   +   L L    +  
Sbjct: 1150 VVRWEFKHPQPFLRTREFLWQEGHS----------AFATFEEAAEEVLQILDL-YAQVYE 1198

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            E   I                             +    T+ +     +          A
Sbjct: 1199 ELLAI---------------------------PVVKGRKTEKEKFAGGDYTTTIEAFISA 1231

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMG 315
                                S R I+ G   + G  +S      F+     G+  +    
Sbjct: 1232 --------------------SGRAIQGGTSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQN 1271

Query: 316  SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQVCRDA----CEKI 368
            S+G+   R +  +     D  G++ P  VA  ++ +I      A  +  RDA    C   
Sbjct: 1272 SWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALSEEDRDALIAKCNDY 1330

Query: 369  YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              RL  V   V  D       G +F   +L G P+++ VG + +   +     R TG + 
Sbjct: 1331 RRRLLNVNIRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKL 1390

Query: 428  DMSLEEVINYASHRFSN 444
             ++  E          +
Sbjct: 1391 TVAENEAETKLQAILED 1407


>gi|195054655|ref|XP_001994240.1| GH23578 [Drosophila grimshawi]
 gi|193896110|gb|EDV94976.1| GH23578 [Drosophila grimshawi]
          Length = 1706

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 143/434 (32%), Gaps = 72/434 (16%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ +  +I  +   G Y   P       ++      E  R+G  E   P  +  A L  
Sbjct: 1223 QVLTKGELIEYYDVSGCYILRPWSYAIWKSIRNWFDAEITRSGVKECYFPIFVSKAALER 1282

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    +    + +   PT E  M   +   ++SYR+LP    Q   
Sbjct: 1283 EKSHIADFSPEVAWVTKSGESDLAEPIAIRPTSETGMYPAYAKWVQSYRDLPIRLNQWNN 1342

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ +S       ++    +M   Y +++    L +IP+  
Sbjct: 1343 VVRWEFKHPQPFLRTREFLWQEGHSAFANKSEAEAEVLEMLELYAQVYTD--LLAIPV-- 1398

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                          V     E + F   ++           F                  
Sbjct: 1399 --------------VKGRKTEKEKFAGGNYTTTV-----EAFISASGRAIQGATSHHLGQ 1439

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              S + +    D   + K+                                   V   S+
Sbjct: 1440 NFSKMFDIVYEDPETQQKQF----------------------------------VYQNSW 1465

Query: 318  GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQVCRD---ACEKIYA 370
            GI   R +  +I    D +G++ P  VA  +  ++     +   D+       AC++I  
Sbjct: 1466 GIT-TRTIGVMIMVHADNQGLVLPPHVACTQAIVVPCGITVNTKDEERAQLLGACKEIVK 1524

Query: 371  RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             LS+ G     D       G +F   +L G P+++ +G K +   ++    R TG +  +
Sbjct: 1525 NLSRAGVRCEGDYRDNYSPGWKFNHWELKGVPIRIELGPKDMQAKQIVAVRRDTGEKMTI 1584

Query: 430  SLEEVINYASHRFS 443
            +L++V         
Sbjct: 1585 ALDDVEKKIPALLE 1598


>gi|302554424|ref|ZP_07306766.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302472042|gb|EFL35135.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 471

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 155/449 (34%), Gaps = 77/449 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F    Q+    AE+A +  +  T +I           P G    + + A +      TGA
Sbjct: 14  FPRWYQDLITKAELADNGPVRGTMIIR----------PYGYGLWERMQAEMDARIKETGA 63

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSH 121
                P L     L  E+   + +  E+  +        ++  +  PT E ++   F   
Sbjct: 64  QNAYFPLLIPESYLTREADHVEGFAPELAVVTHGGGKELEEPAVVRPTSEMIINASFSKW 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R ELRPR   +R+ EFL ++ ++   T E ++   + +    
Sbjct: 124 VQSYRDLPLLINQWANVVRWELRPRL-FLRTSEFLWQEGHTAHATYEEARDFASHIHR-- 180

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R++    L  + M       G     E    A    T            +     D   
Sbjct: 181 -RVYEDFMLNVLAMDVVP---GRKTVKERFAGAINTLT------------LEGMMGDGKA 224

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    S         A                                F T+Y       
Sbjct: 225 LQMATSHELGQNFAKA--------------------------------FNTRY------- 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               DG+   V   S+G    R++ A++    D  G+  P  +A  +  ++ IK  D+  
Sbjct: 246 -LSKDGRQELVWQTSWG-STTRMIGALVMMHGDDGGLRVPPRLAQIQAVVLAIK-GDEAV 302

Query: 362 RDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++  RL   G  V  DD      G +    +L G P+++ VG + + +    +  
Sbjct: 303 LAKVRELGDRLKAAGVRVHVDDRTDIPFGRRAVDWELKGVPVRIEVGPRDLENGTAMLAR 362

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R+ G +E +SL+ +++        ++ +L
Sbjct: 363 RIPGGKEPVSLDALVSLLPEVLEKDQALL 391


>gi|39969493|ref|XP_366137.1| hypothetical protein MGG_10357 [Magnaporthe oryzae 70-15]
 gi|145015163|gb|EDJ99731.1| hypothetical protein MGG_10357 [Magnaporthe oryzae 70-15]
          Length = 566

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 149/436 (34%), Gaps = 72/436 (16%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADL 79
            +++L+  MI  ++   G Y   P        +    +E+ +  G  E S P  L S  L
Sbjct: 76  QEVVLKAEMIEYYTEISGFYILRPAAMFVWSQIRKWFQEKIDVMGVEEASFPMFLSSKSL 135

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 136 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 195

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 196 NSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEEDAGKEVLEILEHYAGVYEQ--LLAVPV 253

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +         ++   I    S        
Sbjct: 254 ----------------VRGKKTENEKFAGGYYTTTVEGYIPSNGRGIQGATSHCLGQNFS 297

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 V + K                E GH+                        V   
Sbjct: 298 KMFDITVEDPKK---------------EKGHLH-----------------------VWQN 319

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKI 368
           S+G+ + RV+  ++    D KG+++P  +A  +  LI +    +   +         +++
Sbjct: 320 SWGL-STRVIGVMVMIHGDDKGLVFPPRIARTQAVLIPVGITAKTTPEERTAHTAKLDEL 378

Query: 369 YARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L   G  V  D         +F   +L G PL++  G K  +  +V    R TG + 
Sbjct: 379 NKTLKDAGVRVESDMRDGYTPAWKFNHWELKGVPLRLEFGPKDAAKDQVAFARRDTGEKG 438

Query: 428 DMSLEEVINYASHRFS 443
            +++ ++         
Sbjct: 439 SIAIADLATKVPELLE 454


>gi|89100420|ref|ZP_01173283.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084849|gb|EAR63987.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 494

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 146/430 (33%), Gaps = 68/430 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S +G     P G    DN+   +      TG   + +P      L   E 
Sbjct: 42  VTKADLIDYSSVRGSMIIRPYGYSLWDNIKNELDRRIKETGHENVYMPMFIPESLLQKEK 101

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +     +   + ++  PT E +  + +++ I SYR+LP  + Q     
Sbjct: 102 DHIEGFAPEVAWVTHGGSEELAERLVVRPTSEVLFCEHYKNIIHSYRDLPKLYNQWANVV 161

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E         +R FL                                 L+ +     +
Sbjct: 162 RWEKT-------TRPFLRT-------------------------------LEFLWQEGHT 183

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + E      T    V+         IP       +                  
Sbjct: 184 ----CHATDEDAHEETTKMLDVYADLCENVLAIPVLKGRKTEKEKFAG------------ 227

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                   F    E+     + ++ G   + G  ++      +   +G+  +V   S+G+
Sbjct: 228 ------AKFTYTIESLMHDGKALQTGTSHHLGDGFAKAFGIQYSDREGELQHVHQTSWGL 281

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              RV+ A+I    D +G+I P  +AP ++ ++ +  H +   D C ++  +L K    V
Sbjct: 282 T-TRVIGAMIMVHGDNRGLIIPPRIAPTQLMIVPVAQHKEGVLDFCYELKEKLGKS-FRV 339

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D   ++ G +F   ++ G PL++  G K + +++V +  R TG +  +  E      +
Sbjct: 340 GIDSSDKKPGWKFNEYEMKGIPLRLEAGPKDIENNQVVLVRRDTGEKLFVQAEGAEQAIA 399

Query: 440 HRFSNNRPVL 449
               + +  L
Sbjct: 400 GLLEDIQSGL 409


>gi|260585028|ref|ZP_05852770.1| proline--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260157224|gb|EEW92298.1| proline--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 482

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/454 (14%), Positives = 156/454 (34%), Gaps = 82/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK+++  +Q+    A++  +  +           G   + P G +  +++         
Sbjct: 12  FSKWYIQTIQK----ADLMDYSPVR----------GCMIFKPDGYEIWEHIQEEFNRRFK 57

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             G      P L     +  E+   + +  E+  + +    + ++ +   PT E ++   
Sbjct: 58  EEGIRNAYFPMLIPESFFTKEADHIEGFAPELPWVTEAAGEKLEERLALRPTSETMIGTA 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F + I SYR+LP+   Q    FR E +     +R+ EFL ++ ++       ++    KM
Sbjct: 118 FSNWINSYRDLPYEVNQWANVFRWEKK-TLPFLRTSEFLWQEGHTAHADEADARRRTMKM 176

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y  +    G+ ++P+       G     E    A   +T    +       + +  +
Sbjct: 177 LDIYKEVVE--GVLAVPVY-----EGQKTPSERFAGAV--DTYSIEAMMKDGKAVQAGTS 227

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +       +   ++          H                                  
Sbjct: 228 HYMGTKFAEAFDIKYLTKENEHVHAHT--------------------------------- 254

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-- 355
                             S+G+ + R++ ++I +  D +G++ P  VAP ++ LI +   
Sbjct: 255 -----------------TSWGV-STRLIGSLIMTHGDEQGLVLPPKVAPTQVVLIPVGPW 296

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +  E++  +L   G  V  DD     G +F   +L G P+++  G + + +++
Sbjct: 297 KKNPAILEKLEELQQQLKAAGLRVKIDDTDNSPGFKFNEWELRGVPMRIECGPRDLENNQ 356

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V  K R    +  +  + ++          +  L
Sbjct: 357 VMTKMRDLDEKVAVGFDVLLETIQSELEKMQGRL 390


>gi|170290808|ref|YP_001737624.1| prolyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174888|gb|ACB07941.1| prolyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 479

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 160/425 (37%), Gaps = 70/425 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGK 91
               KG+Y WLP G + ++N+ +I+     +TG   +  P++    +     R+   +  
Sbjct: 33  RYPVKGMYVWLPYGYELMENIMSIMERLLRQTGHKRVYFPSIVPESVLSREFRFIKGFQD 92

Query: 92  EMLRLAD--RND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            +  +    R D  + +   PT E +M ++    I SYR+LP   YQI   +R E +   
Sbjct: 93  SVFWITKLGRQDAPEKLALRPTSEAIMYEVLSRWISSYRDLPIRIYQIAPIYRYETKATR 152

Query: 148 GVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            ++R RE    K+ ++F                +Y     ++ L+    +          
Sbjct: 153 PMLRVREVAFFKEGHTF--------------HATYEEAVEQVNLEVWIYK--------SF 190

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E +V            K       P    ++D +                        
Sbjct: 191 YDELLVP-------YIVVKTLPWDTFPGALYNYDIVTI---------------------- 221

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                        + +E+G    FG  ++     T+   DG+   V   S+GI + R +A
Sbjct: 222 ---------MPDGKALELGSAINFGDLFARTYDLTYMDEDGQRKNVNTTSFGI-SERSLA 271

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDM 384
           AVI    D +G+  P  +AP +I ++ I   D  +   +   ++ + L +    V  D+ 
Sbjct: 272 AVIAIHGDDRGLRLPPKIAPIQIVIVPIPTKDYEERIMEYSREVKSTLERS-FRVHLDES 330

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+ G +F   ++ G P+++ +G   +   +V +  R    RE + ++++    S    +
Sbjct: 331 EERPGYKFYKWEMKGVPIRIEIGRNELERREVTVFRRDKMEREAIPIDKLNERISEILKD 390

Query: 445 NRPVL 449
              VL
Sbjct: 391 IERVL 395


>gi|256274272|gb|EEU09179.1| Mst1p [Saccharomyces cerevisiae JAY291]
          Length = 429

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 144/444 (32%), Gaps = 82/444 (18%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADL 79
            S +  L   M    S G   +LP G K  + +   ++ +Q    G  E+  P +    L
Sbjct: 42  VSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL 99

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W +SG +++Y  +M ++   D   +     P +      IF    +SY  LP  F     
Sbjct: 100 WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSP 159

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R+E      G+ R R+F   D  S      G++ +Y                    + 
Sbjct: 160 LHRNEASGALSGLTRLRKFHQDDGRS------GAESNY-------------------FIN 194

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             + P       +    A+    ++           P +                     
Sbjct: 195 FSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDG-------------------- 234

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMG 315
           A      +  + D L +  +V+   ++    F    ++       FK  D      + + 
Sbjct: 235 AFYGPKLDIMVTDHLRKTHQVATIQLD----FQLPERF----DLKFKDQDNSYKRPIMIH 286

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
               G++    A++  S++G    WP  + P++  +I +   +    D C  +  +L   
Sbjct: 287 RATFGSIERFMALLIDSNEG---RWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNE 343

Query: 376 G--------------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                           +V  D   E +G +   A L  +   +IVG + V   K  I+ R
Sbjct: 344 READDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRER 403

Query: 422 LTG---IREDMS--LEEVINYASH 440
                  +  MS   E+ I    +
Sbjct: 404 DNRKSFEKLTMSQIWEKFIELEKN 427


>gi|310793744|gb|EFQ29205.1| prolyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 566

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 115/207 (55%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
            ++R G + Q   GI+  LPLG++  D +  +I       GA  +++ T+ S DLW +SG
Sbjct: 4   KLIRAGFLRQSHSGIFHLLPLGRRVQDKLEHVIDYYMQDLGASRVALSTITSKDLWQKSG 63

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R      E+    DR     +  PTHEE +T +    +KSY+ LP   YQI  KFRDELR
Sbjct: 64  RLSQLEPELFSFDDRRGAKYMLSPTHEEEITTLVAKTVKSYKELPLRLYQITRKFRDELR 123

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR+G++R+REF MKD Y+FD + E +  +YNK+  +Y  +F+ L L  +  RA SG +GG
Sbjct: 124 PRYGLLRTREFTMKDLYTFDASAEAALETYNKVQSAYAGVFNALKLPVLVARASSGDMGG 183

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFP 231
           DLSHE+ +    GE  V          
Sbjct: 184 DLSHEYHLPTTIGEDTVVTCSKCDYTV 210



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 13/194 (6%)

Query: 264 NEKLFDSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATF-KGADG-------KDHYV 312
             +  D  P       R    +EVGH F+ GT+YS P+ A      D        K   +
Sbjct: 372 TVRSGDGCPNCDGGVLRVQEALEVGHTFHLGTRYSEPLGAVISVPEDNGRSGTSEKTTLM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           QMG +GIG  R++ AV+E   D KG+ WP  +AP++  +I++   D+      ++I A  
Sbjct: 432 QMGCHGIGVSRLIGAVVEHLADSKGLQWPRVIAPYEAVVISVTDLDKEAVKVYDEITAYS 491

Query: 373 SKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMS 430
                 D   DD    +  +   ADL+G+P+ +++G  +       E++ R  GI+E + 
Sbjct: 492 KDFDAVDAVLDDRSVSLAWKLKDADLVGYPVLIVLGKVWKKQTGICEVQCRRLGIKETVP 551

Query: 431 LEEVINYASHRFSN 444
           L  +    S     
Sbjct: 552 LANLHRRVSELLKQ 565


>gi|284054770|ref|ZP_06384980.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 525

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 119/347 (34%), Gaps = 37/347 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y+    +   RD      +L L +  I +    G+  W P G +    +    R+   + 
Sbjct: 213 YWQQKEEAKKRDHRKLGQELDLFS--IQEDAGGGLVFWHPKGSRMRLLIEDYWRQAHLQG 270

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + +  LW  SG YD Y + M    +  +++    P +       ++SH+ S
Sbjct: 271 GYELLYTPHIANLALWKTSGHYDFYRENMFDQIEIENQSYQLKPMNCPFHVLTYQSHLHS 330

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G+MR R F   DA+ F L PE        +     +
Sbjct: 331 YRELPIRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCL-PEQVADEILGVLNLTEK 389

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P     +     LA          K +                
Sbjct: 390 ILSDFGFSKYEVNLSTRPSKSVGNDGVWQLATDALISALNIKGWDYVVDEGGG------- 442

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        A      + K+ D++    + S   ++    F    ++++     + 
Sbjct: 443 -------------AFYGPKIDIKIQDAIARLWQCSTIQVD----FNLPERFNM----EYV 481

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            ADG +   + +     G++     ++  ++ G   +W   +AP  +
Sbjct: 482 AADGSRQRPIMIHRAIFGSLERFFGILIENYAGDFPLW---LAPVMV 525


>gi|190345647|gb|EDK37570.2| hypothetical protein PGUG_01668 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 526

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 17/230 (7%)

Query: 10  ILQENPR----DAEIAS--------HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           +L++ PR    +AEI S        H+L  + G I+   +G+  W+P G   +  +  II
Sbjct: 1   MLRQLPRIYSTNAEILSKDFRKVPTHQLYTKLGFINHPKQGLVHWMPPGWNMVRKLQTII 60

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                  GA E+++  L SA+LW ++GR+++   E+ +L   ND       T EE +T +
Sbjct: 61  HRHMVGAGAEEVNLSLLSSAELWNKTGRWENN--ELFKL---NDGETCLAATCEEEITQL 115

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            ++ I SY++LP  +YQI+ K+RDE RPR G++R REFLMKDAYSFD+  + +  +YN +
Sbjct: 116 VKNQIASYKSLPLLYYQIKEKYRDEKRPRGGLLRGREFLMKDAYSFDIDEKSAMETYNTV 175

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +Y  +F  L +  +   A++G IGG LSHE++ L   GE  VF  K  
Sbjct: 176 VNAYHGVFKELKVPYVKAEADTGDIGGSLSHEWLYLHPQGEDTVFVCKSC 225



 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 17/184 (9%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--GADG--KDHYVQMGSYGIGAMR 323
             S  + +   +R IEV H FY G KY+ P+  T +  G +G  ++  + MG YGIG  R
Sbjct: 352 CGSCEDGELECSRAIEVAHTFYLGDKYTDPLECTVQVPGPNGVTEERNLMMGCYGIGLSR 411

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A+ E   D  G  WP +++P+  ++I          +  E +   L  +  D+  D 
Sbjct: 412 IIGAIGEICKDENGFRWPAAISPWTATVITSG-------ELGEDLKQTLESMNIDMCVDS 464

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVINYASH 440
             +  IG +   +  +G P+ +IVG+K+    ++E+  R  G      + ++E+  Y   
Sbjct: 465 RSKVGIGKKVRQSQAMGIPISIIVGNKY---PQIEVNVRGVGKDEVRMVGVDELGEYVGR 521

Query: 441 RFSN 444
               
Sbjct: 522 VLKE 525


>gi|161349985|ref|NP_279476.2| prolyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169235366|ref|YP_001688566.1| prolyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|114152200|sp|Q9HS52|SYP_HALSA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511601|sp|B0R3A3|SYP_HALS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167726432|emb|CAP13217.1| proline--tRNA ligase [Halobacterium salinarum R1]
          Length = 501

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 136/416 (32%), Gaps = 70/416 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P     D L  E    + +  E+  +
Sbjct: 39  GFIVTRPRGYALWEAIQDNLDGWFKDTGVENAYFPMFIPEDYLEREKDIVEGFDPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  D+ +   PT E ++       ++S+R+LP    Q     R E        R+
Sbjct: 99  TQGGHDDLDQRLAVRPTSESIIAPYLSQWVRSHRDLPLRVNQWNSVVRWEATETKPFFRT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFI 211
           +EFL ++ ++   T E +          Y R++   LG+  +         G    H+  
Sbjct: 159 KEFLWQEGHTAHATDEAAWAETTLRLDQYHRLYEDVLGIPVLR--------GRKPDHDKF 210

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             ADT                                     +  A   D  + +   S 
Sbjct: 211 PGADTT-----------------------------------MSVEALMPDGKSVQGGTSH 235

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                       +G  F      +     TF   D  +      S+G+ + R + A++ S
Sbjct: 236 H-----------LGQSF------ADAFDITFADEDEAERTAYTTSWGL-SWRAIGALVMS 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-I 388
             D +G++ P +VAP ++ ++ I   D          +I A L   G  V +DD   +  
Sbjct: 278 HSDDQGLVLPPTVAPKQVVIVPIWQEDTKDDVEQYGAEIAAELEAQGVRVHFDDRDGRNP 337

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   +L G P++  +G   V D +V + HR  G         + +        
Sbjct: 338 GFKFNEWELNGVPVRFEIGPNEVEDDEVTVVHRPDGESTVEDRAAIADRVHDHLDE 393


>gi|78188687|ref|YP_379025.1| prolyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|114152180|sp|Q3ASP3|SYP_CHLCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78170886|gb|ABB27982.1| prolyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 481

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 167/449 (37%), Gaps = 82/449 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S++++ ++    R A++A +  +          KG     P G    + + A +      
Sbjct: 13  SQWYIDLV----RSAKLADYADV----------KGCMVIRPNGYAIWEKMQAALDRMFKE 58

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIF 118
           TG +    P          E+   + +  E   +     + +       PT E ++   +
Sbjct: 59  TGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVVTHGGGQELAEKLYVRPTSETIIWSSY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    +M 
Sbjct: 119 KKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRTTEFLWQEGHTAHATHEEAQEEVLRMI 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++     + + +    G      S +F    +T                      
Sbjct: 178 ----NVYKTFAEEYMALPVILGK--KSDSEKFAGALET---------------------- 209

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                 + ++++   A  A TS    +    +     +   + +E               
Sbjct: 210 ----FCIEAMMQDGKALQAGTSHDLGQNFAKAFDCKFQTHEKTLE--------------- 250

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAH 357
                       YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I I K  
Sbjct: 251 ------------YVWATSWGV-STRLIGALIMAHSDDRGLVLPPRLATRQVVIIPILKGD 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +      + I A L+K G   F D   +   G +FA  +L G PL++ +G + + +   
Sbjct: 298 KESVLHHADNIAAALTKAGISAFVDSSEQNSPGWKFAEYELQGIPLRLELGPRDIKNGMC 357

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +  R T  + +++L++ +  + +   N+
Sbjct: 358 VVARRDTLEKTEIALDDRLVMSINEILND 386


>gi|313212369|emb|CBY36357.1| unnamed protein product [Oikopleura dioica]
          Length = 847

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 138/433 (31%), Gaps = 76/433 (17%)

Query: 13  ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E  +D ++ +   + + + G+I  +   G Y  LP      +++     +     G    
Sbjct: 338 EAKKDEDLPTWFQQTITKAGLIEYYDVSGCYVLLPPSYNIWEHIKDFFDKNIKDLGVENC 397

Query: 70  SVPTLQS-ADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
             P   S A L  E    + +  E+  +    D    + +   PT E VM  I+    +S
Sbjct: 398 YFPMFVSQAALEKEKEHIEDFAPEVAWVTRSGDTELAEPIAIRPTSETVMYPIYAKRCQS 457

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E +          FL    + +    +    ++     + + +
Sbjct: 458 HRDLPIKMNQWCNVVRWEFKHPTP------FLRTREFLW----QEGHSAFATKAEAEVEV 507

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              L L    +  +   I                             +P   T  +    
Sbjct: 508 MQILDL-YRQVYEDLLAI---------------------------ATVPGRKTVKEKFAG 539

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +          A                    + R I+     + G  +S   + +F+ 
Sbjct: 540 GDYTTTVEAYIKA--------------------AGRAIQGATSHHLGQNFSKMFNISFED 579

Query: 305 A---DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-----IKA 356
                G   +    S+GI   R +  +I    D KG++ P  V+ +++ ++         
Sbjct: 580 ESKGKGIKEFAYQNSWGIT-TRTIGVMIMVHADDKGLVIPPKVSRYQVVIVPCGATKTDE 638

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 +AC+ +  +L   G     D    ++ G +F   +L G PL++ VG K +  + 
Sbjct: 639 DKNKLFNACKALENQLKSFGIRAHADLRDDKKPGWKFNDWELKGVPLRIEVGPKDLEANS 698

Query: 416 VEIKHRLTGIRED 428
                R T  +  
Sbjct: 699 AVFVRRDTLEKVT 711


>gi|315230490|ref|YP_004070926.1| prolyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315183518|gb|ADT83703.1| prolyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 480

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 142/418 (33%), Gaps = 69/418 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGK 91
               KG+  WLP G + + N+   I EE  RTG  E+  P L    +   E+     +  
Sbjct: 29  RYPVKGMNIWLPYGLRIMRNIEKFIHEEMERTGHQEVLFPALIPETEFQKEAEHIAGFEG 88

Query: 92  EMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI   +R E +   
Sbjct: 89  EVFWVTHAGHDPLDVRLILRPTSETAMYSMFALWIRSHADLPFKIYQIVNVYRYETKHTR 148

Query: 148 GVMRSREFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            ++R RE     +A++   + E ++    +    +  +  +L L  I       P     
Sbjct: 149 PLIRVREISRFFEAHTAHDSFEDAERQIKEDLEIFDNLAKKLALPYI---VSKRP----- 200

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E   F       + + +E    D        +  +   +A   ++  EK
Sbjct: 201 -----------EWDKFPGAY---YSLGAEVVMPDGRTLQIGTMHNYKQNFAKAYNIMYEK 246

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              +     + +      G          L       G D                    
Sbjct: 247 EDGTHEYVHQTTY-----GMSERL-----LAAVIAVHGDD-------------------- 276

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSKVGCDVFWDDM 384
                    +G++ P ++AP ++ ++ I   D          +I   L   G  V  D+ 
Sbjct: 277 ---------RGMVLPPTIAPIQVVIVPIPKKDSPYDVFAYAREIAEELKTAGIRVHVDER 327

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + G +F   +L G PL++ VG + V   K  +  R T  +  +   E+I       
Sbjct: 328 DIRPGRKFYDWELKGVPLRIEVGPRDVEGQKAVLARRDTLEKFTVERAELIEKVRETL 385


>gi|55377088|ref|YP_134938.1| prolyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|74579418|sp|Q5V5H0|SYP_HALMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|55229813|gb|AAV45232.1| proline-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 484

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 137/413 (33%), Gaps = 68/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E    + +  E+  +
Sbjct: 38  GFIVTRPRGYAIWERIQNNLDGWFKDTGVQNAYFPLFIPESYLEKEKDVVEGFDPEVAWV 97

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   ++ +   PT E ++        +S+R+LP    Q     R E        R+
Sbjct: 98  THGGHNELEERLAVRPTSESIIAPFMAQWTRSHRDLPMRLNQWCSVVRWEATETKPFFRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++     +G+          Y R++         + A     G    H+   
Sbjct: 158 KEFLWQEGHTAHADEDGAWEETMTRLDQYARLYEE-------VMAMPPLKGRKPPHDKFP 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A T  T    +       + +  + +                                 
Sbjct: 211 GAHT--TTTIETLMPDGKTVQAATSHY--------------------------------- 235

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                      +G  F  G  +      T+  AD +++     S+G+ + R + A+I + 
Sbjct: 236 -----------LGTSF--GEAF----DITYADADEEENTAHTTSWGL-SWRAMGALIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P ++AP ++ ++ I   D      D    + A L +    V  DD   +  G
Sbjct: 278 SDDQGLVLPPALAPDQVVVVPIWQEDNKDEVIDYAADLAAELDEADVRVELDDREHRNPG 337

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ++   +L G PL+V +G   V D +  + HR  G  E +  + + +  +   
Sbjct: 338 FKYNEHELHGVPLRVEIGPHEVEDGEATLVHRPDGETETVDRDGIADTVTDHL 390


>gi|229494206|ref|ZP_04387969.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229318568|gb|EEN84426.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 406

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 136/408 (33%), Gaps = 48/408 (11%)

Query: 21  ASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R             G+  WLP G    + +     E+  R+G   +  P +  
Sbjct: 3   IDHRELGRDLEFFATTPIVGAGLPLWLPDGAVIRNELEKFAAEQAARSGCRGVYTPVMAK 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +  +  +M        ++ +  P +      +F +  +SYR LPF   ++ 
Sbjct: 63  KELYERSGHWSKFSDDMFPEMKIGGESFLLRPANCPHHAQVFAARGRSYRELPFRVRELG 122

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR EL     G+ R R+  + DA+ F  + E  +        +  R +  LG+     
Sbjct: 123 SMFRSELSGVLSGLSRVRQINLDDAHVF-CSREQVQAEVIVALDAIERCYSTLGIAERKY 181

Query: 196 RAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           R      GG+     + E    A+        ++                          
Sbjct: 182 RLSIR--GGEGQYLGTDEQWADAEDHLRGALNARSIEYVEAKG----------------- 222

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                A      + ++ D+    + +S   ++                  +   DG K  
Sbjct: 223 ---EAAFYGPKIDVQVRDAHGREETLSTVQLDFNQPER--------FDLEYTAEDGSKVR 271

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G+M  + A++    +G     P  +AP ++S++ +    QV     E++ A
Sbjct: 272 PVMIHRGLLGSMERMTALLIERFEG---RMPPWLAPNQVSILPVGDRHQV---EAERLRA 325

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            L      V        +G +   A     P   ++G   V    V++
Sbjct: 326 DLEARDVRVAI-APDGSLGRRIREARTHRDPYIAVIGDNEVHGGTVDV 372


>gi|10580016|gb|AAG18956.1| proline-tRNA synthetase [Halobacterium sp. NRC-1]
          Length = 465

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 136/416 (32%), Gaps = 70/416 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P     D L  E    + +  E+  +
Sbjct: 3   GFIVTRPRGYALWEAIQDNLDGWFKDTGVENAYFPMFIPEDYLEREKDIVEGFDPEVAWV 62

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  D+ +   PT E ++       ++S+R+LP    Q     R E        R+
Sbjct: 63  TQGGHDDLDQRLAVRPTSESIIAPYLSQWVRSHRDLPLRVNQWNSVVRWEATETKPFFRT 122

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFI 211
           +EFL ++ ++   T E +          Y R++   LG+  +         G    H+  
Sbjct: 123 KEFLWQEGHTAHATDEAAWAETTLRLDQYHRLYEDVLGIPVLR--------GRKPDHDKF 174

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             ADT                                     +  A   D  + +   S 
Sbjct: 175 PGADTT-----------------------------------MSVEALMPDGKSVQGGTSH 199

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                       +G  F      +     TF   D  +      S+G+ + R + A++ S
Sbjct: 200 H-----------LGQSF------ADAFDITFADEDEAERTAYTTSWGL-SWRAIGALVMS 241

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-I 388
             D +G++ P +VAP ++ ++ I   D          +I A L   G  V +DD   +  
Sbjct: 242 HSDDQGLVLPPTVAPKQVVIVPIWQEDTKDDVEQYGAEIAAELEAQGVRVHFDDRDGRNP 301

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   +L G P++  +G   V D +V + HR  G         + +        
Sbjct: 302 GFKFNEWELNGVPVRFEIGPNEVEDDEVTVVHRPDGESTVEDRAAIADRVHDHLDE 357


>gi|312212761|emb|CBX92844.1| similar to prolyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 610

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 81/234 (34%), Positives = 131/234 (55%), Gaps = 2/234 (0%)

Query: 2   RRSKYFLPILQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           R SK++ P    +P+D E   SH L++R G + Q   G++  LPLG +    + A+I + 
Sbjct: 42  RLSKFWAPTGGISPQDGEQDDSHALLVRGGFLRQAHSGVFHLLPLGLRVQSKLEALIDKH 101

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A ++S+  + +  LW +SGRY S   E+LR+ DR +   +  PTHEE +T +  S
Sbjct: 102 MSSISASKVSLSFITTEALWRQSGRY-SANSELLRINDRKESGFLLSPTHEEEITALVAS 160

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  K+RDE RPR G++R++EF+MKD Y+FD     +  +Y ++  +
Sbjct: 161 TVHSYKDLPLRLYQIGRKYRDERRPRQGLLRAKEFMMKDLYTFDTDANAALKTYEQVRQA 220

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  +F  L +  +   A+SG +GG LSHE+  ++  GE  V+            
Sbjct: 221 YNNLFDELRIPYLVADADSGNMGGKLSHEYHFISPKGEDNVWSCDSCSYVANEE 274



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 35/200 (17%)

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVV 325
                P       R IE+ H F+ GT+YS P+SA F   DG     + MG +GIG  R+V
Sbjct: 403 PCPRCPSGTLNPHRAIEIAHTFHLGTRYSDPLSAVFAPRDGTAKLAMHMGCHGIGLSRIV 462

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--------- 376
            AV     D +G+ WP  +APF+  ++     +        ++Y  L   G         
Sbjct: 463 GAVAGLLCDERGLNWPRVMAPFECVVLGGGGEEGEV---AGRVYDGLVFGGRDGAAPGGV 519

Query: 377 ---------------------CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                                 D   DD  G+ +G +   ADL+G+P+ V+VG  +    
Sbjct: 520 DNADATAPAAAAAVDADTVQPIDTILDDRPGKSLGWKLRDADLIGYPVVVVVGRAWRERG 579

Query: 415 KVEIKHRLTGIREDMSLEEV 434
           +VE++ R  G++ D+S+ EV
Sbjct: 580 EVEVQCRRLGVKRDVSVSEV 599


>gi|320593564|gb|EFX05973.1| prolyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 554

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 145/424 (34%), Gaps = 72/424 (16%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
            +++L+  MI  ++   G Y   P      + +    ++     G  E S P   SA  L
Sbjct: 62  QEVVLKAEMIEYYNEIAGFYILRPASMYIWNVIRKWFQQRIEHMGVEETSFPMFLSAKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 122 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 182 NSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEQ--LLAVPV 239

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +         T+   I    S        
Sbjct: 240 ----------------VRGRKTENEKFAGGYYTTTVEGYIPTNGRGIQGATSHCLGQNFS 283

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 V + ++                  H++                           
Sbjct: 284 KMFDITVEDPQVKGQHR-------------HVWQ-------------------------N 305

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-----DQVCRDAC--EKI 368
           S+G+ + RV+  ++    D KG++ P  +A  +  LI +  +     D+        +++
Sbjct: 306 SWGL-STRVIGVMVMIHGDDKGLVLPPRIAKIQAILIPVGLNAKMTADEKAAHVARCDEL 364

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            A++   G  V  D   G     +F   +L G PL++  G K    + +    R T  + 
Sbjct: 365 AAQIKAAGVRVEVDVREGYTPAWKFNDWELKGVPLRLEFGPKDREKNVISFARRDTAEKG 424

Query: 428 DMSL 431
            + L
Sbjct: 425 TIPL 428


>gi|330977708|gb|EGH77611.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 477

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 85/235 (36%), Gaps = 5/235 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YILRIEKAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T +  +          L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIF-CTEDQMQAESAAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +   G K I ++  + P     S E    A++       S        P E   +
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFY 461


>gi|134100182|ref|YP_001105843.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006599|ref|ZP_06564572.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912805|emb|CAM02918.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 405

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 144/433 (33%), Gaps = 44/433 (10%)

Query: 21  ASHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R  G+         G+  WLP G      +   IR+ + R G   +  P L  
Sbjct: 2   PDHRKLGRELGLFDSDPLIGAGLPYWLPDGALVRHTLEEYIRDAERRAGYQHVYSPVLGK 61

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +D Y  +M        + ++  P+       I+RS   SYR LP    ++ 
Sbjct: 62  RELYEISGHWDHYRDDMFPPMRLGAEQVVLRPSLCPHHALIYRSRSHSYRELPLRMAELG 121

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             +R EL     G+ R R   + DA+ F  T E              R +  LG+++   
Sbjct: 122 GMYRSELSGVLGGLTRVRAIHLNDAHIF-CTLEQVAEEAAAALELIRRAYDALGIRAARY 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           R      GG                 + +   M     +   D  D      + E     
Sbjct: 181 RLSLPGSGG----------------KYVAAPRMWQRAAALLVDVLDRCG--VVYESVEGE 222

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM- 314
            A      + ++ DS      +S   ++                  + G DG  H   M 
Sbjct: 223 AAFYGPKIDVQVADSAGREATLSTVQVDFHQPDR--------FDLHYIGGDGDRHRPVMV 274

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               IG++    A +   H G    W   +AP ++ ++ +   +         +     +
Sbjct: 275 HRSIIGSVERAVAHLVELHGGAFPAW---LAPTQLVVLPVSDAEAEQ---ARALVRGCHE 328

Query: 375 VGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G        + G  +G++   A L   P Q ++G+K  +  +V ++ R     + +   
Sbjct: 329 RGLRAEVAGPERG-SLGARIRAARL--VPYQAVIGAKEAAAEEVALRLRDGRRLDSLPAA 385

Query: 433 EVINYASHRFSNN 445
           +V+          
Sbjct: 386 DVLARIGELVGAR 398


>gi|108758355|ref|YP_634772.1| prolyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|123073939|sp|Q1CXV1|SYP_MYXXD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108462235|gb|ABF87420.1| prolyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 483

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 161/458 (35%), Gaps = 86/458 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ ++Q+    A++A +  +          KG     P G    +N+  ++ +   
Sbjct: 18  FSEWYVDLVQK----AKLADYSDV----------KGCMVIRPNGYALWENMQRVLDKMFK 63

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             G      P L     L  E+   + +  ++  +      + ++  +  PT E ++   
Sbjct: 64  DLGHKNAYFPLLIPESYLKKEAEHVEGFNPQLAVVTHAGGSKLEEPYVIRPTSETIINRS 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+SYR+LP    Q     R E       MR+R FL    + +              
Sbjct: 124 FAKWIQSYRDLPLLLNQWANVMRWE-------MRTRLFLRTTEFLWQ------------- 163

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E     +T E     ++      +    T
Sbjct: 164 -------------------------------EGHTCHETEED----AEKETRQMLEVYRT 188

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +D +++  +  Q +        +          E      + ++ G     G  ++  
Sbjct: 189 FAEDYMAMPVMTGQKSESERFAGALRT-----YSIEAMMQDKKALQAGTSHNLGQNFAKA 243

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+G DGK H+V   S+G+ + R++  +I +  D  G+I P  +A   + +I I   
Sbjct: 244 FDTQFQGRDGKMHHVWQTSWGV-STRLIGGLIMTHSDDAGLIVPPKLAATHVVIIPIFGK 302

Query: 358 -----DQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFV 411
                     +    + A L K G  V  DD   +  G ++   +L+G  L++ +G K +
Sbjct: 303 ASDAEKAQVLEKTNALAADLRKAGLGVVLDDDDTKSPGFKYNEHELIGTCLRIELGPKDL 362

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + +   +  R    +E +SL+E ++ A       +  L
Sbjct: 363 AKNSCVMVRRDVRQKEFVSLDEAVSKAQAMLDAMQKDL 400


>gi|302924192|ref|XP_003053833.1| hypothetical protein NECHADRAFT_31483 [Nectria haematococca mpVI
           77-13-4]
 gi|256734774|gb|EEU48120.1| hypothetical protein NECHADRAFT_31483 [Nectria haematococca mpVI
           77-13-4]
          Length = 485

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/486 (16%), Positives = 152/486 (31%), Gaps = 91/486 (18%)

Query: 9   PILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            +  + P   E   H+ +       +   +S G   +LP G +  + +   +R++  R G
Sbjct: 29  RLYSQKPEKREPPDHRKLGLQQELFISSIYSPGSPIFLPNGARIFNRLVDFLRKQYVRYG 88

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML------------------------RLADRND 101
             E+  PT+    LW +SG  ++Y  +M                         +  D  +
Sbjct: 89  FEEVITPTIYKKSLWAKSGHLENYADDMYAVRGNTEQPPAEHDGCCGSHPENLKPEDEEE 148

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDA 160
                 P +      IF S   SYR+LP  +       R+E+     G+ R R F   D 
Sbjct: 149 GDYGLKPMNCPGHCLIFASKRHSYRDLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDG 208

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFH--RLGLKSIPMRAESGP-IGGDLSHEFIVLADTG 217
           + F   P   +    K       ++   R G     +   + P      + E    A+  
Sbjct: 209 HIF-CRPCQVEEEIKKTLDFVKVVYTVLRFGASYR-LALSTRPKDHYIGTEEEWAQAENA 266

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +   +          +                     A      +  L DS  +  + 
Sbjct: 267 LKRALDASGMEWGVKEGDG--------------------AFYGPKIDIVLTDSDGKEHQT 306

Query: 278 SARGIEVGHIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSYGIGAM 322
           +   ++    F    ++ L   A                     G    V +    +G++
Sbjct: 307 ATIQLD----FQLPKRFELEYQAPAPEYEARGETTEDPALLAEYGPVRPVMIHRAVLGSV 362

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV------- 375
             + A++   +DGK   WP  + P +  ++ +        D  E +   L          
Sbjct: 363 ERLMALLIEKYDGK---WPFWLNPRQAIILTVNT-STPVLDWAEHVRDVLVGHNKQNVFR 418

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V  D     +G++   A   G+   ++VG + V + +V +       RE +S E+
Sbjct: 419 PTGLAVDVDTTARPLGAKIKEARTNGYGQILVVGDEDVKNKQVAL------GRERISPED 472

Query: 434 VINYAS 439
           +     
Sbjct: 473 LRERLK 478


>gi|315043510|ref|XP_003171131.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311344920|gb|EFR04123.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 523

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 144/437 (32%), Gaps = 65/437 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            D         L T  I  +S G   + P G   L+ + + +R +  + G  E+  P + 
Sbjct: 59  ADHRALGTAQDLFTNSI--YSPGSPLFRPNGTHILNKLISFLRAQYRQYGFREVLTPNIY 116

Query: 76  SADLWVESGRYDSYGKEMLRLADRND-------KAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              LW  SG + +Y  +M  +  R D       +     P +      +F+S   SYR L
Sbjct: 117 KQSLWEVSGHWQNYKDDMYEVGGRGDTGDSTENETYGLKPMNCPGHCLLFKSQKHSYREL 176

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +       R+E+     G+ R R F   D + F   P                +   
Sbjct: 177 PVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIF-CRPGQIGSEIQLALKFADTVLQT 235

Query: 188 LGLKS-IPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            GL     +   + P      S E    A+    Q   +          +          
Sbjct: 236 FGLADGYRLVLSTRPEKDFIGSLEQWENAEQQLRQALDNSGLSWELNEGDG--------- 286

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                      A      + ++ DS  +  ++S   +++     FG +Y +P  +     
Sbjct: 287 -----------AFYGPKIDLQIQDSQGKYHQLSTIQLDMNLPQRFGLEYLVPEGSEEYDP 335

Query: 306 --DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G+   V +     G++    A++   ++G+   WP  ++P +  L+ +    +    
Sbjct: 336 ATGGRATPVLIHRAIFGSLERFFALLIERYNGQ---WPFWLSPHQAILLTVGKGLE---Q 389

Query: 364 ACEKIYARLSKVGCD----------------------VFWDDMGEQIGSQFAVADLLGFP 401
           A E + A++S  G +                      V  D     +  +   A    + 
Sbjct: 390 AAEDVVAKVS--GFEPITSTHPSSTGLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYN 447

Query: 402 LQVIVGSKFVSDSKVEI 418
           L  I+G K +++  V+I
Sbjct: 448 LVFIMGPKNLAEGSVDI 464


>gi|311029306|ref|ZP_07707396.1| prolyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 477

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 150/452 (33%), Gaps = 77/452 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +    AE+  +  +  + +I           P G    +N+   + +   
Sbjct: 13  MDEDFAQWYTDVVTKAELVDYSSVRGSMIIR----------PYGYALWENIKDALDKRIK 62

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +    D+ +    +  PT E +  + 
Sbjct: 63  ETGHENVYMPLFIPESLLQKEKDHIEGFAPEVAWVTHGGDEKLQERLVVRPTSEVLFGEH 122

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +++ I SYR+LP  + Q     R E         +R FL                     
Sbjct: 123 YKNIIHSYRDLPKLYNQWANVVRWEKT-------TRPFLRT------------------- 156

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                       L+ +     +     + +HE  V       ++ C        I  + T
Sbjct: 157 ------------LEFLWQEGHTCHETDEQAHEETVKMLNVYAEI-CENILAIPVIKGQKT 203

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           + +            +                          + ++     + G  ++  
Sbjct: 204 EKEKFAGAKYTYTIESL---------------------MHDGKALQSATSHHLGDGFAKA 242

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F   +GK  YVQ  S+G    R++ A+I    D +G++ P  +AP ++ ++ I  H
Sbjct: 243 FGIQFLNREGKQEYVQQTSWGFT-TRIIGAMIMVHGDDRGLVVPPRIAPTQVMIVPIAQH 301

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +  +LS+    V  D   ++ G +F   ++ G PL++  G + +   +V 
Sbjct: 302 KEGVLDFAYDLKEKLSEF-IRVGIDASDKKPGWKFNEYEMKGIPLRLEAGPRDIEQQQVV 360

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R TG +    +E +         + +  L
Sbjct: 361 LVRRDTGEKLITPMEGLEAKIQEILEDIQKNL 392


>gi|196230454|ref|ZP_03129316.1| prolyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196225384|gb|EDY19892.1| prolyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 508

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 154/476 (32%), Gaps = 99/476 (20%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RR + F    Q+  R A++A +  +           G     P G    +N+  I     
Sbjct: 11  RRDEDFPEWYQQVVRAADLAENSDVR----------GCMVIKPWGYGLWENMQRIFDGML 60

Query: 62  NRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLAD-----------------RNDKA 103
             TG      P     + L  E+   + + KE   +                      + 
Sbjct: 61  KETGHRNAYFPLFIPLSYLAKEAAHVEGFAKECAVVTHHRLEADGRGGLRPAPAAELTEP 120

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +I  PT E ++   +   ++SYR+LP    Q     R E+RPR   +R+ EFL ++ ++ 
Sbjct: 121 LIVRPTSETIIGASYAKWVQSYRDLPILINQWCNVVRWEMRPRL-FLRTAEFLWQEGHTA 179

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             + E +           L ++ +     + +   +G              +  E + F 
Sbjct: 180 HESAEQALQET----DLILGLYEKFARDYLALPVITG--------------EKSEAERFP 221

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                                                            E      + I+
Sbjct: 222 GAVKT-----------------------------------------LCIEAMVQDRKAIQ 240

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G   + G  ++      F+  +GK+ Y    S+G+ + R++  V+ +  D  G+I P  
Sbjct: 241 AGTSHFLGQNFAKASEIKFQSREGKEEYAWTTSWGV-STRLIGTVLMAHSDDDGLILPPR 299

Query: 344 VAPFKISLINIKAHDQ---VCRDACEKIYARLSKV-----GCDVFWDDMGEQIGSQFAVA 395
           +AP +I ++ I    +       A +K+ A L           V  D      G++    
Sbjct: 300 IAPAQIVILPIAPKPETRDAVFAAADKLAAELRAQTAFGEKISVEVDKRDIGGGTKSWEW 359

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVINYASHRFSNNRPVL 449
              G P+++ +G + +    V +  R  G   +E +   E +  A       +  L
Sbjct: 360 IKKGVPIRIELGPRDLEKGTVAVARRDRGPKEKEFVPNAEFVAKAGAVLEEFQAGL 415


>gi|300023435|ref|YP_003756046.1| prolyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525256|gb|ADJ23725.1| prolyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 510

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 150/455 (32%), Gaps = 89/455 (19%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           ++ ++R G + + S   G     P G    + + A +      TG      P        
Sbjct: 18  YQAIVRDGDMAETSPVRGCMIIKPWGWGVWERLQAELDARIKDTGHDNCYFPLFIPMSFI 77

Query: 81  -VESGRYDSYGKEMLRLADRN----------------DKAMIYGPTHEEVMTDIFRSHIK 123
             E+   + + KEM  +                    ++ +I  PT E ++ D F+  IK
Sbjct: 78  AKEAEHVEGFAKEMAVVTHHRLKNEGGKLVVDPDAKLEEPLIVRPTSETIIGDAFQRWIK 137

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    Q     R E+R R   +R+ EFL ++ ++     + +     KM    L 
Sbjct: 138 SYRDLPLLVNQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHADKDDAVAETLKM----LE 192

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++                                E  +       + P        D+  
Sbjct: 193 VYRTF----------------------------AEDVLAMPVIAGEKPANERFPGADNTY 224

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           S+ +                                + ++ G   Y GT ++   +  F+
Sbjct: 225 SIEA---------------------------MMQDGKALQAGTSHYLGTHFAEAQNIQFQ 257

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQV 360
            ADGK  Y    S+G+ + R++  VI +  D  G+  P ++AP +I ++ +   K  D  
Sbjct: 258 NADGKLTYCHTTSWGV-STRLIGGVIMTHGDDDGLRLPPAIAPRQIVIVPMLREKPEDAA 316

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C  +   L   G     D    +   +       G P+ V +G +  S   V    
Sbjct: 317 LIEYCAALEKDLKAAGIRTLVDAKAVKSAEKRWNWVRRGAPVIVEIGGRDASGGNVTFMR 376

Query: 421 RL---TGIR---EDMSLEEVINYASHRFSNNRPVL 449
           R     G +   + +   + ++ A       +  L
Sbjct: 377 RDKLRDGDKVISQTLPRADFVSQAPALLKEIQQAL 411


>gi|307200437|gb|EFN80646.1| Bifunctional aminoacyl-tRNA synthetase [Harpegnathos saltator]
          Length = 1483

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 137/439 (31%), Gaps = 72/439 (16%)

Query: 26   MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVES 83
            + ++GMI  +   G Y + P        +   I  E    G  E   P  +  A L  E 
Sbjct: 997  ITKSGMIEYYDVSGCYIFRPWSFMMWKVIKDYIDREITALGVQECYFPIFVTRAVLEKEK 1056

Query: 84   GRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                 +  E+  +    D    + +   PT E VM   +   ++S   LP    Q     
Sbjct: 1057 AHIADFAPEVAWVTKCGDSDLAEPVAIRPTSETVMYPAYAKWLRSDTELPLKLNQWNNVV 1116

Query: 140  RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            R E +     +R+REFL ++ ++   T + ++     +   Y R++  L           
Sbjct: 1117 RWEFKDPKPFLRTREFLWQEGHTAFATKKEAEEEVLTILDLYSRVYEEL----------- 1165

Query: 200  GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                            I    T+ +     +          A+ 
Sbjct: 1166 ---------------------------LAVPVIKGRKTEKEKFAGGDYTTTVEAFISASG 1198

Query: 260  SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
              +             ++    +E                        +  +V   S+G+
Sbjct: 1199 RAIQGATSHHLGQNFSKMFNIQVEGAT------------------ESEEKTFVYQNSWGL 1240

Query: 320  GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARL 372
               R +  +I    D +G++ P  VAP +  LI             +     CEK+   L
Sbjct: 1241 T-TRTIGVMIMVHGDDRGLMVPPMVAPIQAVLIPCGIAASTTMEQKERLNYECEKLRTEL 1299

Query: 373  SKVG-CDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             ++G   +  D    +  G +F   +L G P+++ +G   V   +V    R    R  + 
Sbjct: 1300 LEIGKFRMGVDYRNNRTPGWKFNHWELKGVPVRIELGPAEVEKHQVTFVCRDNLERHTVP 1359

Query: 431  LEEVINYASHRFSNNRPVL 449
             ++VI+       N +  L
Sbjct: 1360 RDQVISALHSLLKNIQSRL 1378


>gi|269791928|ref|YP_003316832.1| prolyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099563|gb|ACZ18550.1| prolyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 478

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 156/459 (33%), Gaps = 87/459 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L +++     AE+A +  +    +I           P G    +++     E   
Sbjct: 12  FSQWYLDVIRA----AELADYAPVRGCMVIR----------PTGYALWESIQRHFDEAFK 57

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG +    P L        E+   + +  E   +     D  ++ ++  PT E V+  +
Sbjct: 58  ETGHVNAYFPLLIPNSFLEREAQHVEGFAPECAVVTHAGGDELEEPLVVRPTSETVIGHM 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++S+R+LP    Q     R E RPR   +R+ EFL ++ ++   T E         
Sbjct: 118 YSKWVQSWRDLPILINQWCNVMRWEKRPRL-FLRTSEFLWQEGHTAHATRE--------- 167

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +       LG+    M+                  D     V   +       P  + 
Sbjct: 168 -EAMEETLRMLGVYETIMK------------------DVLALPVVTGEKSEGERFPGADN 208

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F                                 E      + ++ G   + G  ++  
Sbjct: 209 TFT-------------------------------CEAMMSDRKALQAGTSHFLGQNFAKA 237

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  DG+  Y    S+G+ + R++ A+I +  D  G+I P  VAP K++L+ I   
Sbjct: 238 FDIRFQDRDGEVKYAWTTSWGV-STRLIGAIIMTHSDDDGLILPPRVAPVKVALLPISTD 296

Query: 358 DQVCRDACEKIYARLSKV-----GCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKF 410
             +   + E     L        G      D     +   +F      G PL++ +G K 
Sbjct: 297 QDLISSSLEPKAMELKAAIEDRIGPRTVALDRQYHLRPSDRFFSHLQKGVPLRIELGQKE 356

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + +  V +  R  G R D+ +E      +   +  +  L
Sbjct: 357 LENRTVRLVCRDNGERIDVPMEGAPERVAEVLNQIQARL 395


>gi|315501868|ref|YP_004080755.1| tRNA synthetase class ii (g h p and s) [Micromonospora sp. L5]
 gi|315408487|gb|ADU06604.1| tRNA synthetase class II (G H P and S) [Micromonospora sp. L5]
          Length = 404

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 139/436 (31%), Gaps = 43/436 (9%)

Query: 21  ASHKLMLR--TGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R     +       G+  WLP G  A   V   +RE + R G   +  P L  
Sbjct: 2   IDHRRLGRDLELFVSDPLAGAGLPIWLPAGAAARHAVEEYVRELERRAGYQHVYSPPLGK 61

Query: 77  ADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            +L+  SG    +  +M        D   +  P        +FR+  +SYR LP    ++
Sbjct: 62  RELFERSGHLGYFADDMFPPMRLSADDEFVLRPALCPHHALVFRARGRSYRELPLRVAEL 121

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E      G+ R R   + DA++F    E       ++          LG++   
Sbjct: 122 GGMYRAERSGVLGGLSRVRAISLNDAHNFCA-LEQVGDEVREILRLIGEAHAALGVRPAG 180

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +R                    G  Q +   D              D       V +   
Sbjct: 181 LRLSLR----------------GPDQRYVGDDAGWARAEELLRAALD----GVDVVEAPG 220

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A      + ++ D+      +S   ++                 ++  +DG+     M
Sbjct: 221 EAAFYGPKIDIQIVDAAGRESTISTVQLDFDKPER--------FDLSYTDSDGRRKRPVM 272

Query: 315 -GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                +G+M  + A +   H+G    W    AP ++ L+ + A           +  R  
Sbjct: 273 VHRSLVGSMERLFAYLIEVHEGAFPAW---YAPVQLLLLPVDAAQADAA---VGLARRAE 326

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D  G  +G++   A     P   ++G +  +D  V ++ R   + + M   E
Sbjct: 327 AAGLRAEVDHAG-SLGARIRDASRRRVPYTGVLGPREAADGSVSLRLRDGRVLDPMPAAE 385

Query: 434 VINYASHRFSNNRPVL 449
            +       ++    L
Sbjct: 386 ALGLIGAVVASRSAAL 401


>gi|156742029|ref|YP_001432158.1| prolyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|259511618|sp|A7NKX0|SYP_ROSCS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156233357|gb|ABU58140.1| prolyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 480

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 152/458 (33%), Gaps = 86/458 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L I+Q+    A++A +          +  KG   + P G    + +   + +    
Sbjct: 14  SQWYLDIVQQ----ADLADYA---------EVVKGCIVFKPTGYALWEAIQRGLDDRIKA 60

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
           TG +    P L     L  E+   + +  E+  +     +   +  +  PT E ++   +
Sbjct: 61  TGHVNAYFPLLIPKSFLMKEAEHVEGFAPEVAEVTRAGGEDLAEPYVIRPTSETIIGYFY 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              ++SYR+LP    Q     R E       MR+R FL    + +               
Sbjct: 121 SKWVRSYRDLPLLINQWANVMRWE-------MRTRPFLRTTEFLWQ-------------- 159

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                                        H      +  E +       +      ++  
Sbjct: 160 ---------------------------EGHTVHATEEDAERETLLILHEVYADFVEKDMA 192

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              I  L S  E++     +                     R ++ G     G  ++   
Sbjct: 193 IPVIRGLKSEKEKFPGALRSYCIE-----------AMMQDGRALQAGTSHNLGQNFARAF 241

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             T+        Y    S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I  +D
Sbjct: 242 DITYTDQHNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLVIPPRLAPTQVVVVPIYRND 300

Query: 359 Q---VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               V  +A +++ A    +      DD      G +F   +L G P++V +G K +   
Sbjct: 301 AERSVVMEAVQRMTAEWKGL-LRFKVDDRDNLTPGFKFNEWELKGVPIRVEIGPKDIEKG 359

Query: 415 KVEIKHRLTGIRE---DMSLEEVINYASHRFSNNRPVL 449
            V I  R    RE    +  E +    +      +  L
Sbjct: 360 SVAIARRDQPGREGKSFVPQEGLTARLAALLEEIQQAL 397


>gi|315185841|gb|EFU19606.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 589

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/234 (35%), Positives = 128/234 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+  PR+ E   + L+++ G +    +G+YS+LPLG +    +  +I  E
Sbjct: 25  MRYSQLFPHTLRTLPREHEGTPYGLLVKGGYVRGLGQGLYSFLPLGLRVFYKLKRLIAGE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ VP +   +LW  SGR    G ++++ +DR  + M+  PTHEE M ++ R 
Sbjct: 85  MKRLGGQEVLVPLVNPMELWERSGRDLLVGGDLVKFSDRAGRQMVISPTHEEAMVELLRQ 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ Q K+RDE R R G++RSREF+MKD YSF  T     + + K+F +
Sbjct: 145 SMRSYRMLPVFLYQFQTKYRDEERVRIGLLRSREFIMKDGYSFHRTYADLNNFFPKVFHA 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y R+F    +  I   A  G +GG+ S+EF+V ++ G+  V             
Sbjct: 205 YERVFRTCNVPYIVAEAGVGYMGGERSYEFLVPSERGDNVVIRCPSCGYTANQD 258



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 7/179 (3%)

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                        R +E+GHIF  G  YS  M  +F    G++ +  MGSYGIG  R+++
Sbjct: 412 HRCYYCGTPMQEERAVEIGHIFKLGDFYSQRMGLSFFDERGREIHPYMGSYGIGMGRLIS 471

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++E++ D  GI+WP  VAPF + L++I     + R    K+ A    +G     DD   
Sbjct: 472 MIVETNSDEHGIVWPPQVAPFMVFLMSIGNSLSMKR----KLEALAEALGDRALLDDRHL 527

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVINYASHRF 442
             G +F  ADLLG P ++++  + + + KVE+K R TG    ++   +E+ ++Y   ++
Sbjct: 528 SPGRKFLDADLLGIPYRILLTQELLEEGKVEVKERTTGKVWKLAYQRVEDFVHYLEEQY 586


>gi|302925353|ref|XP_003054078.1| hypothetical protein NECHADRAFT_89892 [Nectria haematococca mpVI
           77-13-4]
 gi|256735019|gb|EEU48365.1| hypothetical protein NECHADRAFT_89892 [Nectria haematococca mpVI
           77-13-4]
          Length = 548

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 117/207 (56%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
             H  ++R G + Q   GI+  LP+G +  D +  ++ +  +  GA  +S+ T+ S +LW
Sbjct: 2   VGHGKLIRGGFLRQAHSGIFQLLPMGLRVQDKIEKLLDKHMHSVGASRLSLSTISSEELW 61

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             S R D    E+ RLADR +  +I  PTHEE +T +    +KSY++LP   YQI  K+R
Sbjct: 62  RRSDRLDRVAPELFRLADRKEVPLILSPTHEEEITTLVAGTLKSYKDLPIRLYQITRKYR 121

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPR G++RSREFLMKD Y+FDLT   +  +Y  +  +Y   F  L L  +   A SG
Sbjct: 122 DERRPRHGLLRSREFLMKDLYTFDLTTAAAIETYRLVSAAYRAFFSELKLPYLVAEASSG 181

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDF 227
            +GGDLSHE+ + +  GE  V      
Sbjct: 182 DMGGDLSHEYHLPSAVGEDTVVNCNSC 208



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 18/196 (9%)

Query: 267 LFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------------GKD 309
             D  P  +       R +E GH F+ GT+YS+P+ A                    G  
Sbjct: 352 DGDGCPRCEEGTLKIHRALECGHTFHLGTRYSVPLDACVFLPQSELPKVAKEEGLKPGSR 411

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             VQMG +G+G  R+  AV E   D +G+ WP ++APF++++I     D+   +  + + 
Sbjct: 412 VPVQMGCHGVGVSRIFGAVAEILADERGLNWPRAIAPFEVAVIPTPGLDKESIEIYDNLV 471

Query: 370 A-RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           A   S+ G DV  DD  +  G +   AD++G+P+ VI+G  F      E++ R   ++E+
Sbjct: 472 AGSSSQPGLDVVLDDRKQSFGWKMNDADIVGYPVVVILGKAFKQGRLCEVQCRQLSVKEN 531

Query: 429 MSLEEVINYASHRFSN 444
           + LEE+  + S     
Sbjct: 532 VKLEELPRFISGLLDQ 547


>gi|146420078|ref|XP_001485997.1| hypothetical protein PGUG_01668 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 526

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 17/230 (7%)

Query: 10  ILQENPR----DAEIAS--------HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           +L++ PR    +AEI S        H+L  + G I+   +G+  W+P G   +  +  II
Sbjct: 1   MLRQLPRIYLTNAEILSKDFRKVPTHQLYTKLGFINHPKQGLVHWMPPGWNMVRKLQTII 60

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                  GA E+++  L SA+LW ++GR+++   E+ +L   ND       T EE +T +
Sbjct: 61  HRHMVGAGAEEVNLSLLSSAELWNKTGRWENN--ELFKL---NDGETCLAATCEEEITQL 115

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            ++ I SY++LP  +YQI+ K+RDE RPR G++R REFLMKDAYSFD+  + +  +YN +
Sbjct: 116 VKNQIASYKSLPLLYYQIKEKYRDEKRPRGGLLRGREFLMKDAYSFDIDEKLAMETYNTV 175

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +Y  +F  L +  +   A++G IGG LSHE++ L   GE  VF  K  
Sbjct: 176 VNAYHGVFKELKVPYVKAEADTGDIGGSLSHEWLYLHPQGEDTVFVCKSC 225



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 17/184 (9%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--GADG--KDHYVQMGSYGIGAMR 323
             S  + +    R IEV H FY G KY+ P+  T +  G +G  ++  + MG YGIG  R
Sbjct: 352 CGSCEDGELECLRAIEVAHTFYLGDKYTDPLECTVQVPGPNGVTEERNLMMGCYGIGLSR 411

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A+ E   D  G  WP +++P+  ++I          +  E +   L  +  D+  D 
Sbjct: 412 IIGAIGEICKDENGFRWPAAISPWTATVITSG-------ELGEDLKQTLESMNIDMCVDS 464

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVINYASH 440
             +  IG +   +  +G P+ +IVG+K+    ++E+  R  G      + ++E+  Y   
Sbjct: 465 RSKVGIGKKVRQSQAMGIPISIIVGNKY---PQIEVNVRGVGKDEVRMVGVDELGEYVGR 521

Query: 441 RFSN 444
               
Sbjct: 522 VLKE 525


>gi|159036838|ref|YP_001536091.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157915673|gb|ABV97100.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 468

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 152/453 (33%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ F    Q+    A++A +  +  T +I           P G    + + A +     
Sbjct: 8   RAEDFPRWYQDLIAKAKLADNGPVRGTMVIR----------PAGYAIWERMQAEMDNRIK 57

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDI 117
            +GA     P     D L  E+   + +  E+  +         + ++  PT E V+ + 
Sbjct: 58  ASGAENAYFPLFIPEDHLKREAEHVEGFSPELAVVTHGGGKQLAEPVVVRPTSETVIGEF 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SYR+LP    Q     R ELRPR        FL    + +              
Sbjct: 118 MAKWIDSYRDLPLLLNQWANVVRWELRPRI-------FLRTSEFLWQE------------ 158

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                      G  +   R ++      + HE            +         IP    
Sbjct: 159 -----------GHTAHATRQDARAYARKILHE-----------AYEDLMVNVLAIP---- 192

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                + +     +     A  +      + D          + +++G     G  +SL 
Sbjct: 193 -----VQVGLKTARERFAGATATYTLEGMMGDG---------KALQLGTSHELGQNFSLA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +  A G        S+G  + R++  +I    D  G+  P  +AP +  ++ +K  
Sbjct: 239 FGINYTSATGGVELAWTTSWG-TSTRMLGGLIMCHGDDNGLRVPPKLAPVQAYVMVVKDG 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +A  +++  L   G  V  DD  +   G +   A+L G+P++V +G + ++    
Sbjct: 298 -EGVAEAAGRLHDGLRDAGVRVALDDRTDTPFGRRAVDAELRGYPVRVEIGPRDLAAGNA 356

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R  G +  + + +V+         ++  L
Sbjct: 357 VVVRRTDGSKSPVPVADVVGAVRAALEADQQAL 389


>gi|302537186|ref|ZP_07289528.1| prolyl-tRNA synthetase [Streptomyces sp. C]
 gi|302446081|gb|EFL17897.1| prolyl-tRNA synthetase [Streptomyces sp. C]
          Length = 470

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 157/462 (33%), Gaps = 85/462 (18%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P  ++ PR        AE+A +  +  T +I           P G    + +
Sbjct: 1   MAKAPVLTPQAEDFPRWYQDLINKAELADNGPVRGTMVIR----------PYGYGLWERM 50

Query: 54  NAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGP 108
              +       GA     P       L  E+   + +  E+  +        ++ ++  P
Sbjct: 51  QQEMDARIKEAGAQNAYFPLFIPQSYLTKEAEHVEGFAPELAVVTHGGGKELEEPVVVRP 110

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T E ++ D F   ++SYR+LP    Q     R E       MR R         F  T E
Sbjct: 111 TSETIINDYFSKWVQSYRDLPLLINQWANVVRWE-------MRPR--------VFLRTSE 155

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                 +    +Y              R  +  I  D+  +F+     G   V   K   
Sbjct: 156 FLWQEGHTAHATYED-----------ARDYAARIHRDVYGDFMTNV-LGIDVVLGRKTAK 203

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +    + NT   +                                      + +++G   
Sbjct: 204 ERFAGAINTLTLE--------------------------------GMMGDGKALQMGTSH 231

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GT ++   +  +   +G+   V   S+G+ + R+V  +I S  D  G+  P  +A  +
Sbjct: 232 ELGTNFAKAFNTQYLSKEGQQELVWQTSWGV-STRMVGGLIMSHGDDNGLRVPPRLANVQ 290

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVG 407
           + ++ IK  + V +    ++  RL   G  V  DD  +   G +    +L G P+++ +G
Sbjct: 291 VVVMAIKGDEAVAK--VRELGDRLKAAGIRVHVDDRVDTPFGRRAVDWELKGVPVRIEIG 348

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + +      +  R+ G +  + ++ +++        ++  L
Sbjct: 349 PRDLEAGTAMLARRIPGGKTPVQIDALVDLLPKVLDEDQAQL 390


>gi|224134713|ref|XP_002327471.1| predicted protein [Populus trichocarpa]
 gi|222836025|gb|EEE74446.1| predicted protein [Populus trichocarpa]
          Length = 448

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 150/422 (35%), Gaps = 78/422 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----D 98
           P G    + +   +  +   TG   M  P         +     + +  E+  +      
Sbjct: 5   PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPFSFIEKEASHVEGFSPELALVTIGGGK 64

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E ++  +F   I SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 65  ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMVNQWANVTRWEMR-TKPFVRTLEFLWQ 123

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           + ++    PE +++   +M   Y +  + +    +IP+ A     G     E    AD  
Sbjct: 124 EGHTAHANPEEAENEALQMIDVYTKFAYEQ---AAIPVIA-----GRKSKAETFAGADRT 175

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                       + I +   D   + +  S         A                    
Sbjct: 176 ------------YTIEAMMGDRKALQAGTSHNLGQNFSRA-------------------- 203

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                       FGT++           +G+  +V   S+ + + R +  +I +  D  G
Sbjct: 204 ------------FGTQF--------MDENGERQHVWQTSWAV-STRFIGGIIMTHGDDSG 242

Query: 338 IIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFA 393
           ++ P  +AP ++ ++ I   +       +A   +   L   G  V  DD  ++  G +F 
Sbjct: 243 LMLPPKIAPIQVVIVPIWKKEDEKTGVLNAASSVKKVLQSAGIKVKLDDTDQRTPGWKFN 302

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE-EVIN-YASHRFSNNRP 447
             ++ G PL++ +G + VS + V I  R      G    +S+E  ++  Y   +    + 
Sbjct: 303 FWEMKGVPLRIEIGPRDVSSASVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQS 362

Query: 448 VL 449
            L
Sbjct: 363 SL 364


>gi|309792694|ref|ZP_07687145.1| prolyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308225243|gb|EFO79020.1| prolyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 480

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/459 (15%), Positives = 143/459 (31%), Gaps = 82/459 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R+K +     +  R+A++A          + +  +G   + P G    + +   + +   
Sbjct: 9   RAKDYNQWYLDIVREADLAE---------VAEVVRGCIVFKPTGWAIWEMMQRALDDRIK 59

Query: 63  RTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDI 117
            TG   +  P L        E+   D +  E+  +     +      +  PT E ++   
Sbjct: 60  ETGHSNVQFPLLIPKSFIMKEAEHVDGFAPEVAEVTRAGGEDLTEPYVIRPTSETIIGHF 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP  + Q     R E       MR+R FL    + +              
Sbjct: 120 YSKWIRSYRDLPLLYNQWCNVMRWE-------MRTRPFLRTSEFIWQ------------- 159

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                         H   V     E +       +      +  
Sbjct: 160 ----------------------------EGHTAHVNEAEAEAETLKILHEVYADFAEQVM 191

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I  L +  E++     +                     R ++ G     G  ++  
Sbjct: 192 AVPVIRGLKTENEKFPGALRSYCIE-----------AMMQDGRALQAGTSHNLGQNFAKA 240

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+   +    +    S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I  +
Sbjct: 241 FEITYTDHNNTVQHAWTTSWGV-STRLIGALIMTHSDDEGLVIPPRLAPIQVVVVPIFKN 299

Query: 358 D---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D   +        + +    V      DD      G +F   ++ G P+++ VG K V  
Sbjct: 300 DAEREKVMATVHALTSTWKGV-LRFKIDDRDNLSPGFKFNEWEMKGVPVRIEVGPKDVEK 358

Query: 414 SKVEIKHRL--TGI-REDMSLEEVINYASHRFSNNRPVL 449
             V I  R       +  +  E +           +  L
Sbjct: 359 GSVAIARRDIPGREGKSFVPQEGLTERIRDLLEAIQQAL 397


>gi|149910913|ref|ZP_01899544.1| threonyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805980|gb|EDM65964.1| threonyl-tRNA synthetase [Moritella sp. PE36]
          Length = 513

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 97/310 (31%), Gaps = 32/310 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L    + + + G+  W   G      +  +IRE+       E
Sbjct: 235 RLAEAEKRDHRKIGKQLDLY--HMQEDAPGMVFWHNDGWIIFRELENLIREKLREFDYQE 292

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG +D Y + M       ++     P +      I+   +KSYR+L
Sbjct: 293 VKGPQIMDRSLWEKSGHWDKYSEGMF-CTHSENREYAIKPMNCPGHVQIYNQGLKSYRDL 351

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G+MR R F   DA+ F  T    +   +         +  
Sbjct: 352 PLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTESQIQKEVSDCIKMVFETYAT 410

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G ++I ++  + P     S E    ++        +          E            
Sbjct: 411 FGFENIEIKLSTRPEKRVGSDETWDKSEQALADALTASGLSYDVQEGEG----------- 459

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A         L D L    +     ++       G +Y          ++G
Sbjct: 460 ---------AFYGPKIEFTLHDCLDRAWQCGTIQLDFSMPEKLGAEY-------VCESNG 503

Query: 308 KDHYVQMGSY 317
           ++  V +   
Sbjct: 504 RETPVMIHRA 513


>gi|291299687|ref|YP_003510965.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290568907|gb|ADD41872.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 468

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 153/440 (34%), Gaps = 77/440 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +++ F    Q+    AE+A +  +    +I           P G    + + A + +   
Sbjct: 8   QNEDFPRWYQDIVAKAELAENGPVKGQQVIR----------PTGFALWERMVAEMDDRIK 57

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TGA   S P L     L  E+   + +  E   +        ++ ++  PT E V+ + 
Sbjct: 58  ETGAENASFPLLIPQSYLSKEAQHVEGFAPECWTVTHAGGKELEEPVVVRPTSETVIGES 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               +KSYR+LP    Q     R E+R R   +RS EFL +                   
Sbjct: 118 MSRWVKSYRDLPLLLNQWCNVMRYEMRTRL-FLRSSEFLWQ------------------- 157

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E      T E     ++  +         
Sbjct: 158 -------------------------------EGHTAHATFEDAAAYNRRILHEVYQDFME 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +   +     +         A +    E              + ++ G     G  ++  
Sbjct: 187 NVVALPVFTGLKTAAERFAGAINTFTCEA--------MMRDGKALQAGTAHELGQNFAKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               + G+DGK H+    S+G+ + R+V A+I    D  G+  P  +AP +  ++ +K  
Sbjct: 239 FDIQYLGSDGKQHHAWTTSWGV-STRMVGALIMGHGDDSGLRVPPRLAPVQAYVMTVKDG 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +A  K +A L   G     +D      G +   A+L G+P+++ +G + V++ K 
Sbjct: 298 -EGVSEAAAKTHAALRAAGVRSKLNDRSDVAFGRRAVDAELKGYPVRLEIGPRDVAEGKA 356

Query: 417 EIKHRLTGIREDMSLEEVIN 436
            +  R+ G +  +SL+ V  
Sbjct: 357 MLVRRIAGTKTQVSLDGVTE 376


>gi|116195310|ref|XP_001223467.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88180166|gb|EAQ87634.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 556

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 136/436 (31%), Gaps = 72/436 (16%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADL 79
            +++L+  MI  ++   G +   P      + +    +E     G  E + P   S   L
Sbjct: 62  QEVVLKAEMIEYYTEISGFFIMRPATMYVWNTIRKWFQERIEEMGVEETNFPMFLSQKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LPF   Q 
Sbjct: 122 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPFRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT + +     ++   Y  I+ +  L ++P+
Sbjct: 182 NSVVRWEAKQTTPFLRAREFLWQEGHTAHLTEQLAGEEVLQILELYAGIYEQ--LLAVPV 239

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +         ++   I    S        
Sbjct: 240 ----------------VRGRKTEAEKFAGGYYTTTVEGYIPSNGRGIQGATSHCLGQNFS 283

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 V +           + S                                     
Sbjct: 284 KMFDITVEDPNEKGKHINVWQNSW------------------------------------ 307

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--- 372
                + RV+  ++    D KG++ P  +A  +  LI +    ++  +  EK    L   
Sbjct: 308 ---GLSTRVIGVMVMIHGDDKGLVLPPRIAKIQSILIPVGLTAKMTAEEKEKHLKHLDEI 364

Query: 373 ----SKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
                  G     D         +F   +L G PL++  G K  +   V    R TG + 
Sbjct: 365 FFTIKNAGIRTEVDLRDGYTPAWKFNDWELKGVPLRLEFGPKDAAKEVVSYARRDTGEKG 424

Query: 428 DMSLEEVINYASHRFS 443
            + + E+         
Sbjct: 425 TIPITELTTKIPELLE 440


>gi|19112954|ref|NP_596162.1| cytoplasmic proline-tRNA ligase Prs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74582353|sp|O60155|YHY6_SCHPO RecName: Full=Putative prolyl-tRNA synthetase C19C7.06; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|3218410|emb|CAA19574.1| cytoplasmic proline-tRNA ligase Prs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 716

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 142/446 (31%), Gaps = 66/446 (14%)

Query: 16  RDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +DA+  +   +++ ++ MI  +   G Y   P      + +     +E  + G      P
Sbjct: 211 KDADFPNWYQQVLTKSDMIEYYDISGCYILKPWSYSIWEAIQGWFDKEIKKLGVRNGYFP 270

Query: 73  -TLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
             + S  L  E    + +  E+  +        D+ +   PT E VM   +   I+S+R+
Sbjct: 271 LFVSSKVLEKEKDHVEGFAPEVAWVTRAGTSELDEPIAIRPTSETVMYPYYAKWIRSHRD 330

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    Q     R E +     +R+REFL ++ ++  +T EG+    +++   Y RI+  
Sbjct: 331 LPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHMTLEGATEEVHQILDLYARIYTD 390

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             L ++P+      I G  S           T V          I    +          
Sbjct: 391 --LLAVPV------IKGVKSENEKFAGGMFTTTVEGYIPTTGRGIQGATSHCLGQNFSKM 442

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                  P A                +  +S R I                         
Sbjct: 443 FNIVVEDPNAEIGPTGERPKLFVWQNSWGLSTRTI------------------------- 477

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQVCRD 363
                                +    D KG+  P ++A  +  ++      K  DQ   +
Sbjct: 478 ------------------GVAVMVHGDDKGLKLPPAIALVQSVVVPCGITNKTTDQERNE 519

Query: 364 A---CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C K+  RL+        D      G +F+  ++ G PL++  G      ++V    
Sbjct: 520 IEGFCSKLADRLNAADIRTEADLRAYTPGYKFSHWEMKGVPLRLEYGPNDAKKNQVTAVR 579

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R T  +  + L  +    S   +  +
Sbjct: 580 RDTFEKIPVPLNNLEKGVSDLLAKIQ 605


>gi|167771272|ref|ZP_02443325.1| hypothetical protein ANACOL_02630 [Anaerotruncus colihominis DSM
           17241]
 gi|167666523|gb|EDS10653.1| hypothetical protein ANACOL_02630 [Anaerotruncus colihominis DSM
           17241]
          Length = 478

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 141/446 (31%), Gaps = 77/446 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + A++A +  +    ++           P G    +N+  I+     
Sbjct: 14  MDEDFAKWYTDIVKKADLADYSSVRGCMIVR----------PYGCAIWENIQHILDTRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
             G   + +P      L   E    + +  E+  +    ++ +       PT E +  + 
Sbjct: 64  ELGHENVQMPMFIPEGLLQKEKDHVEGFAPEVAWVTHGGEEKLTERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I SYR+LP  + Q     R E +     +R+ EF  ++ ++   T + +     +M
Sbjct: 124 YAKIINSYRDLPKLYNQWCSVVRWE-KTTRPFLRTCEFWWQEGHTMHETQQEAMEETERM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++      S+ +       G     E    A+              + I +   
Sbjct: 183 ----LGVYAEFCENSLAIPVTK---GRKTKKEQFAGAEAT------------YTIEAMMH 223

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + S  S         A              P           +G I          
Sbjct: 224 DGKALQSGTSHYFGDGFSRAFGITFQGRDNKPQYPHQTSWGMSTRIIGAI---------- 273

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                                          I +  D  G++ P ++AP ++ ++ I  H
Sbjct: 274 -------------------------------IMTHGDNDGLVLPPAIAPVQVVVLPIAQH 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +A   +  RL  V C V  DD     G +FA  ++ G PL++ +G + ++  +  
Sbjct: 303 KEGVLEAARAVTERLRGV-CRVKIDDSDNSAGWKFAEYEMKGVPLRLEMGPRDIAAGQCV 361

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +  R    +  ++L+E+         
Sbjct: 362 VVRRDNREKTVVALDELEQRIPELLR 387


>gi|170070377|ref|XP_001869557.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167866293|gb|EDS29676.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 489

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 10/231 (4%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R +K F P L   P++A +        S +LML  G+I Q   G +  +PL Q++L    
Sbjct: 3   RLTKIFQPTLI-VPKNAVVKNQDVTSKSQRLMLEQGLIRQAGNGTFYLMPLLQRSLQKAV 61

Query: 55  AIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
            ++         A ++++P L +A LW +SGR +S G E++R  DR+ K  I GPTHEE 
Sbjct: 62  DLVDHFMQRHASAQKLTLPILTAASLWRQSGRLESAGPELMRTTDRHGKQQILGPTHEES 121

Query: 114 MTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S    SYR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+    ++ 
Sbjct: 122 ITALVASISPVSYRAFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVGRGEARE 181

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           +Y ++  +Y ++F  +G+  + +R ++G IGG  SHE+   ++ GE Q+  
Sbjct: 182 TYEEVNEAYRKLFDAVGVGYVKVRGDTGTIGGSESHEYHFPSEVGEDQLVP 232


>gi|34763882|ref|ZP_00144786.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886345|gb|EAA23616.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 175

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/163 (51%), Positives = 114/163 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 5   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 65  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            I SY++LP   Y IQ KFRDE RPRFG+MR R    +    F
Sbjct: 125 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGRGIYYERCLFF 167


>gi|255030614|ref|ZP_05302565.1| threonyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 303

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 122/333 (36%), Gaps = 32/333 (9%)

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             I+++ I SYR LP    ++ +  R E+     G+ R R   + DA+ F + P+  K  
Sbjct: 1   MMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDE 59

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           + ++    L ++    +     R                  D   T+ +   D M     
Sbjct: 60  FKRVVELILEVYKDFDITDYSFRLSYR--------------DPKNTEKYFDDDAMWEKAQ 105

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +      D + ++    +     A      + ++  ++ + + +S   ++    F    +
Sbjct: 106 AMLKSAMDEMEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD----FLLPER 159

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +      T+ G DG+ H   +   G+ + M    A +   + G    W   +AP ++ +I
Sbjct: 160 F----DLTYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAPVQMEII 212

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            + A      D  + +  +L + G     DD  E++G +   A     P  +++G + V 
Sbjct: 213 PVNA--DAHLDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVE 270

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V ++   +   E M L+  I       S  
Sbjct: 271 AGSVNVRRYGSKDSETMDLDAFIAQVVAEVSKY 303


>gi|160881955|ref|YP_001560923.1| prolyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|259511590|sp|A9KL35|SYP_CLOPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160430621|gb|ABX44184.1| prolyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 477

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 146/446 (32%), Gaps = 78/446 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +  +           G   + P G    +N+   +     
Sbjct: 14  MDEDFAQWYTDVVKKAELVDYSGVR----------GCTIFRPAGYAIWENIQKELDARFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     + +       PT E +  D 
Sbjct: 64  ATGVENVYMPMFIPESLLNKEKDHVEGFAPEVAWVTHGGGEQLQERLCVRPTSETLFCDF 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP  + Q     R E +     +R+ EFL ++ ++   T E ++    +M
Sbjct: 124 YSHIIESYRDLPKLYNQWCSVVRWE-KTTRPFLRTLEFLWQEGHTAHATAEEAEERTIQM 182

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y             + A     G     E    A+                      
Sbjct: 183 LNLYADFCEE-------VLAIPMVRGRKTDKEKFAGAEA--------------------- 214

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                 +              +   HN     +   N + + +  ++ ++          
Sbjct: 215 ------TYTIEALMHDGKALQSGTSHNFGDGFAKAFNIQYTDKENKLQYVHQ-------- 260

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                             S+G+   R++ A+I    D  G++ P  +AP ++ ++ I   
Sbjct: 261 -----------------TSWGM-TTRLIGALIMVHGDNSGLVLPPRIAPTQVVIVPIMQK 302

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   ++  +L      V  DD  +  G +F+  ++ G P++V +G K +  ++  
Sbjct: 303 KEGVLEKAAELREKLGA--FRVKVDDSDKSPGWKFSEHEMRGIPVRVEIGPKDIEANQAV 360

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +  R T  +  +SL+E+         
Sbjct: 361 LVRRDTREKTVVSLDEIDTKIGEILE 386


>gi|307717987|ref|YP_003873519.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306531712|gb|ADN01246.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 577

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/234 (35%), Positives = 127/234 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+  PR+ E   + L+++ G +    +G+YS+LPLG +    +  +I  E
Sbjct: 13  MRYSQLFPHTLRTLPREHEGTPYGLLVKGGYVRGLGQGLYSFLPLGLRVFYKLKRLIAGE 72

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P +   +LW  SGR    G ++++ +DR  + M+  PTHEE M ++ R 
Sbjct: 73  MKRLGGQEVLAPLVNPMELWERSGRDLLVGGDLVKFSDRAGRQMVISPTHEEAMVELLRQ 132

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ Q K+RDE R R G++RSREF+MKD YSF  T     + + K+F +
Sbjct: 133 SMRSYRMLPVFLYQFQTKYRDEERVRIGLLRSREFIMKDGYSFHRTYADLNNFFPKVFHA 192

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y R+F    +  I   A  G +GG+ S+EF+V ++ G+  V             
Sbjct: 193 YERVFRTCNVPYIVAEAGVGYMGGERSYEFLVPSERGDNVVIRCPSCGYTANQD 246



 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 7/179 (3%)

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                        R +E+GHIF  G  YS  M  +F    G++ +  MGSYGIG  R+++
Sbjct: 400 HRCYYCGTPMQEERAVEIGHIFKLGDFYSQRMGLSFVDERGREIHPYMGSYGIGMGRLIS 459

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++E++ D  GI+WP  VAPF + L++I     + R    K+ A    +G     DD   
Sbjct: 460 MIVETNSDEHGIVWPPQVAPFMVFLMSIGNSLSMKR----KVEALAEALGDRALLDDRHL 515

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVINYASHRF 442
             G +F  ADLLG P ++++  + + + KVE+K R TG    ++   +E+ ++Y   ++
Sbjct: 516 SPGRKFLDADLLGIPYRILLTQELLEEGKVEVKERSTGKVWKLAYQRVEDFVHYLEEQY 574


>gi|116620962|ref|YP_823118.1| prolyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122255000|sp|Q027I0|SYP_SOLUE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116224124|gb|ABJ82833.1| prolyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 480

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 144/425 (33%), Gaps = 75/425 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +  KG       G    + +   + +    T    +  P L     L  E+   + +  E
Sbjct: 31  EIVKGCMVIKANGYAVWEVLQRELDDRFKATNHQNVYFPLLIPQSFLKKEAEHVEGFAPE 90

Query: 93  MLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  +        ++  +  PT E ++   F   I SYR+LP  + Q     R ELR R  
Sbjct: 91  LAVVTVAGGKELEEPYVIRPTSETIIGHFFSKWIHSYRDLPLLYNQWANVIRWELRTRM- 149

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            +R+ EFL ++ ++     E           +   +   L L                  
Sbjct: 150 FLRTTEFLWQEGHTAHSNHE----------EAVEEVLRILDL------------------ 181

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                A   E         +   + +    F   +   SI        A           
Sbjct: 182 ----YAQVAED---IMAMPVIKGVKTHAEKFAGALKSYSIEAMMQNGLA----------- 223

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                        ++ G     G  +       F+  +G+  YV   S+G+ + R++  +
Sbjct: 224 -------------LQAGTSHDLGQNFGKAFDVQFQSKEGQLEYVWQTSWGV-STRLIGGL 269

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDM- 384
           I +  D KG++ P  +AP K  ++ I   ++      +A  +I             DD  
Sbjct: 270 IMTHSDDKGLVLPPKLAPVKSVIVPIYRKEEERAAVLEAAHRIAKE-----IGAKVDDRE 324

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G+  G++F   +  G P+ + +G + ++  K+ +K R TG +E +   EV    +    +
Sbjct: 325 GQSPGAKFFHWERRGVPVVLELGPRDLASGKIVLKRRDTGTKEPIDQSEVGAKVAAALED 384

Query: 445 NRPVL 449
            +  L
Sbjct: 385 MQKGL 389


>gi|164656383|ref|XP_001729319.1| hypothetical protein MGL_3354 [Malassezia globosa CBS 7966]
 gi|159103210|gb|EDP42105.1| hypothetical protein MGL_3354 [Malassezia globosa CBS 7966]
          Length = 723

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 142/441 (32%), Gaps = 69/441 (15%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G Y   P      +++      E  + G    S P   S+D L 
Sbjct: 228 QQVLRKGDMLDYYDVSGCYILKPWSYYVWESIQRFFDAEIKKIGVQNCSFPMFVSSDVLE 287

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 288 REKDHVEGFAPEVAWVTKAGKSDLEKPVAIRPTSETVMYPYYAKWIQSHRDLPLRLNQWN 347

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPM 195
              R E +     +R+REFL ++ ++  L  E +      +   Y R++   L L  +P 
Sbjct: 348 SVVRWEFKHPQPFLRTREFLWQEGHTAHLHKEQADEEVRYILDLYRRVYEELLALPVVP- 406

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                  G     E         T                +       S    +      
Sbjct: 407 -------GVKSEKEKFAGGLYTTTVEGYVPTTGRGVQGGTSHSLGQNFSRMFDITVQDPK 459

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
               +    E        +  +S R I                                 
Sbjct: 460 ATDETRGKPEGRLFVWQNSWGLSTRTI--------------------------------- 486

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---AHDQVCRDA----CEKI 368
             G+  M           D KG++ P  V+  ++ L+         Q  +DA    C+ +
Sbjct: 487 --GVMVM--------VHGDDKGLVMPPRVSQVQVVLVPCGLGVKVSQDVKDAVNKTCDDV 536

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L   G     D       G +F   +L G PL++ VG K +S+  +    R TG +E
Sbjct: 537 AEQLRTRGIRAHADLRDNYNPGFKFNDWELRGVPLRLEVGPKDLSNQSLIAVRRDTGAKE 596

Query: 428 DM---SLEEVINYASHRFSNN 445
            +   SL++ +     +  N+
Sbjct: 597 SLALNSLDQSVPMLLDQIHND 617


>gi|34763883|ref|ZP_00144787.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886346|gb|EAA23617.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 411

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 101/203 (49%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D    N    +             +   + +   K  SARGIE G IF  G KYS  M+A
Sbjct: 208 DYHYKNVNYGRDYTADIVADIRTAKVGENCIIGGKLHSARGIECGQIFKLGDKYSKAMNA 267

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T+   +GK  Y+ MG YGIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V
Sbjct: 268 TYLDENGKTQYMLMGCYGIGVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEV 327

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EKIY  L +   D   DD  E+ G +F  ADL+GFP +++VG +   +  VE+K 
Sbjct: 328 QVSLAEKIYNELEEEKIDAMLDDRDEKPGFKFKDADLIGFPFKIVVGKR-ADEGIVELKI 386

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++   E+I        
Sbjct: 387 RRTGETLELPQNEIIAKIKELMK 409



 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 42/69 (60%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKDAYSF  + E     +  M  +Y RIF R GLK  P+ A+SG IGG  S EF VLA++
Sbjct: 1   MKDAYSFHTSQESLDEEFLNMRNAYSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAES 60

Query: 217 GETQVFCSK 225
           GE ++  S 
Sbjct: 61  GEDEIIYSD 69


>gi|329929336|ref|ZP_08283089.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328936705|gb|EGG33148.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 485

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 150/450 (33%), Gaps = 83/450 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ ++++    A++  +  +           G   + P G +  +++ A +     
Sbjct: 21  FSRWYIDVIKK----ADLMDYSPVR----------GCIVFKPDGYEIWEHIQAELDRRFK 66

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E    + +  E+  + +    + ++ +   PT E +   +
Sbjct: 67  ATGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAAGEKLEERLAIRPTSETMFGHM 126

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E        R+  FL    + +              
Sbjct: 127 YSKWIQSYRDLPVLINQWANVVRWEK-------RTLPFLRTSEFLWQE------------ 167

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G  +HE    A  GET               +  
Sbjct: 168 --------------------------GHTAHETEAEA-RGET--------------MQML 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D       + +           S+     +     E      R ++ G   Y GT +S  
Sbjct: 187 DIYQQFVEDYLAIPVIKGQKTPSEKFAGAVDTFSIEAMMKDGRAVQAGTSHYMGTNFSQA 246

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   +    Y    S+G+ + R++ ++I    D +G++ P  VAP ++ +I I   
Sbjct: 247 FDIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVHGDDRGLVLPPKVAPTQVIMIPIGPP 305

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                     ++++  L   G  V  DD    + G +F   ++ G P+++ +G + + + 
Sbjct: 306 KTRDAVVGRTDELFRELKSAGIRVRVDDNPDVRPGWKFNEYEMRGVPVRLEIGPRDMENG 365

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +  R+TG ++ +    +I         
Sbjct: 366 VCVLVSRITGEKKVVEQANLIQEVQSMLEQ 395


>gi|254569756|ref|XP_002491988.1| Protein with similarity to tRNA synthetases [Pichia pastoris GS115]
 gi|238031785|emb|CAY69708.1| Protein with similarity to tRNA synthetases [Pichia pastoris GS115]
 gi|328351517|emb|CCA37916.1| prolyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 564

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 2/237 (0%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           ++ +H ++L++  I+Q + GI  WLPLG +    +  +IR+  ++ G +EM + +L S  
Sbjct: 28  DLTTHDMLLQSRFIYQPAAGIVHWLPLGLRTYKKLQNVIRKRMDQAGGLEMELSSLSSKH 87

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  + R+D+   E+ +  D  D+     PT EE +T++      SY++LP   YQI  K
Sbjct: 88  LWERTKRWDNN--ELFKFKDSKDRDYCLVPTCEEEITNLVGDLCSSYKDLPLLVYQISRK 145

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDELRPR G++R REFLMKDAYSFDLT E    SY+ +  +Y RIF  L L      A+
Sbjct: 146 YRDELRPRGGLLRGREFLMKDAYSFDLTKEDGLKSYDNVNEAYRRIFQDLKLPVTVANAD 205

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           SG IGGDLS E+ ++ ++GE  +F            +     D         +    
Sbjct: 206 SGSIGGDLSLEYHLIHESGEDILFRCNSCQTVSNVEKCQSLPDKQFKGVQEAECQYF 262



 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 12/189 (6%)

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
           NT+  D+  L      +T       +    +      +        IEVGH FY   KYS
Sbjct: 332 NTNMPDLKVLYHRNSMFTFTDIPIVEAIAGERCYECEKGTLSEHTAIEVGHTFYLDKKYS 391

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            P+  T      +   V MG YGIG  R++AA+ ++S D  G+ WP  +AP++I+L++ K
Sbjct: 392 SPLDCTVVNEQNEQTTVYMGCYGIGVSRLIAAIAQTSRDEVGLTWPQIIAPYQITLLSNK 451

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKF--V 411
              +   D   +I +       DV  D+   +  +G +   + + G PLQ+IVG  F  +
Sbjct: 452 TSSKKNLDTVTEILSS-----FDVQVDNRDGKFSMGHKLKQSKVAGIPLQIIVGKHFPLI 506

Query: 412 SDSKVEIKH 420
               +E++ 
Sbjct: 507 E---IEVRT 512


>gi|171691298|ref|XP_001910574.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945597|emb|CAP71710.1| unnamed protein product [Podospora anserina S mat+]
          Length = 551

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 148/436 (33%), Gaps = 72/436 (16%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
            +++ +  M+  ++   G +   P      + +     E     G  E + P   S+  L
Sbjct: 60  QEVVQKAEMVEYYTEISGFFVMRPNTMYIWNTIRKWFNERIEAAGVEECNFPMFLSSTSL 119

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    +K     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 120 QKEKDHVEGFAPELAWVTKAGEKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLKLNQW 179

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REF+ ++ ++  ++ E +     ++   Y  I+ +  L ++P+
Sbjct: 180 VSVVRWEAKQTVPFLRAREFMWQEGHTAFVSEEQAGKEVLEILELYAGIYEQ--LLAVPV 237

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +         ++   I             
Sbjct: 238 ----------------VRGKKTEAEKFAGGYYTTTVEGYIPSNGRGIQG----------A 271

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            +     +  K+FD   E+     + I   H++                           
Sbjct: 272 TSHCLGQNFSKMFDITVEDPTNKGQKI---HVWQ-------------------------N 303

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKI 368
           S+G+ + RV+  ++    D KG++ P  +A  +  LI +           +   D   ++
Sbjct: 304 SWGL-STRVIGVMVMIHGDDKGLVLPPRIAKTQAILIPVGLTAKTTPEDKEKHLDRMYEL 362

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            A L K G     D   G     +F   ++ G P+++  G K  +   V    R TG + 
Sbjct: 363 LAILKKAGVRTEIDTREGYTPAWKFNDWEMKGVPVRLEFGPKDAAKDVVSFARRDTGEKG 422

Query: 428 DMSLEEVINYASHRFS 443
            + + E+         
Sbjct: 423 TIPIGELTTKVPELLE 438


>gi|254578182|ref|XP_002495077.1| ZYRO0B02794p [Zygosaccharomyces rouxii]
 gi|238937967|emb|CAR26144.1| ZYRO0B02794p [Zygosaccharomyces rouxii]
          Length = 564

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 139/288 (48%), Gaps = 21/288 (7%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSAD 78
           + +H+L    G I Q   G+  WLP+G + L+ V +I+R   N+ G A+E+S+  L    
Sbjct: 28  LPTHELFQTLGFIRQSQSGLVHWLPMGLRTLNKVESIVRHRMNQDGDALEVSLSALSPRS 87

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW ++ R+     E+ +L D    +    PT EE +T++   +I SYR++P T YQI  K
Sbjct: 88  LWEKTNRWSGT--ELFKLKDAKKASYCLTPTCEEDITNLMNEYITSYRDMPTTVYQITRK 145

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDELRPR G++R REFLMKDAYSF    E +  ++ KM   Y +IF  L +  +   A+
Sbjct: 146 YRDELRPRGGLLRGREFLMKDAYSFASNEEEALQTFQKMNAVYNKIFQDLKIPFVSAWAD 205

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +G IGGDLS E+  L + GE  +       D     +   F D +    +         A
Sbjct: 206 TGDIGGDLSKEYHYLHEGGEDTLLTCDQCGDVSNVEKCESFPDEVG---LHSGDVNVKYA 262

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            S  H+  +    P  ++ S                +L M A     D
Sbjct: 263 LSKDHSTLICYYYPSTRQFSW---------------NLAMDAMEGDVD 295



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 15/216 (6%)

Query: 215 DTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +  + ++  SK    MD  + S +   D  +              +       ++  S  
Sbjct: 311 ERPDDEIMFSKILRVMDCRLNSRSNFPDFPLQKYLKNNFGQLNEVSLVAAEAGEICGSCE 370

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIES 331
           E      + IEVGH F+ GTKYS  M + F  ++   +   QMG YGIG  R+V A+ E 
Sbjct: 371 EGHLRGDKSIEVGHTFHLGTKYSEAMGSKFTDSNNNSNSIPQMGCYGIGISRLVGAIAEV 430

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY--ARLSKVGCDVFWDDMGEQIG 389
           + D KG  WP SV+P+ +S+     ++Q+ ++  + I     LS+             +G
Sbjct: 431 ARDSKGFKWPTSVSPYLMSIC--GKNEQLVQETRQTIESPDVLSQFN-------SKLGLG 481

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
           ++  ++  LG PL +IVG K     +VE++  R  G
Sbjct: 482 ARIKLSHALGIPLAIIVGPKSWPKVEVEVRGQRWNG 517


>gi|261407942|ref|YP_003244183.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261284405|gb|ACX66376.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 485

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 150/450 (33%), Gaps = 83/450 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ ++++    A++  +  +           G   + P G +  +++ A +     
Sbjct: 21  FSRWYIDVIKK----ADLMDYSPVR----------GCIVFKPDGYEIWEHIQAELDRRFK 66

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E    + +  E+  + +    + ++ +   PT E +   +
Sbjct: 67  ATGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAAGEKLEERLAIRPTSETMFGHM 126

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E        R+  FL    + +              
Sbjct: 127 YSKWIQSYRDLPVLINQWANVVRWEK-------RTLPFLRTSEFLWQE------------ 167

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G  +HE    A  GET               +  
Sbjct: 168 --------------------------GHTAHETEAEA-RGET--------------MQML 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D       + +           S+     +     E      R ++ G   Y GT +S  
Sbjct: 187 DIYQQFVEDYLAIPVIKGQKTPSEKFAGAVDTFSIEAMMKDGRAVQAGTSHYMGTNFSQA 246

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   +    Y    S+G+ + R++ ++I    D +G++ P  VAP ++ +I I   
Sbjct: 247 FDIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVHGDDRGLVLPPKVAPTQVIMIPIGPP 305

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                     ++++  L   G  V  DD    + G +F   ++ G P+++ +G + + + 
Sbjct: 306 KTRDAVVGRTDELFRELKSAGIRVRVDDNPDVRPGWKFNEYEMRGVPVRLEIGPRDMENG 365

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +  R+TG ++ +    +I         
Sbjct: 366 VCVLVSRITGEKKVVEQANLIQEVQSMLEQ 395


>gi|86742091|ref|YP_482491.1| threonyl-tRNA synthetase [Frankia sp. CcI3]
 gi|86568953|gb|ABD12762.1| threonyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 438

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 142/449 (31%), Gaps = 71/449 (15%)

Query: 22  SHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            H+ + R   +         G+  WLP G      +   IR  + R G   +  P L   
Sbjct: 3   DHRKLGRELELFDTDPLIGSGLPYWLPAGAVVRHTLEEYIRGVERRAGYRHVYSPVLGKR 62

Query: 78  DLWVESGRYDSYGKEMLRLAD-------------------------RNDKAMIYGPTHEE 112
           +L+  SG +  Y  +M    D                            + M+  P+   
Sbjct: 63  ELYEISGHWSHYRDDMFPPMDLSGERLGGERLGGERLGGERLGGERLGGEQMVLRPSLCP 122

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSK 171
               I+RS   SYR+LP    ++   +R EL     G+ R R   + DA+ F   PE   
Sbjct: 123 HHALIYRSRAHSYRDLPLRMAELGGMYRSELSGVLGGLTRVRAIQLNDAHIFCA-PEQVA 181

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG--ETQVFCSKDFMD 229
                        +  LG+     R      GG    +  +   +    T+V  +     
Sbjct: 182 DEARAALELIREAYGALGVSPARYRLSLPGPGGKYVGDPGMWRRSAALLTEVLDAAGVAY 241

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             +                        A      + ++ DS      +S   I+      
Sbjct: 242 EAVEG--------------------EAAFYGPKIDVQIVDSAGREATLSTVQIDFHQPER 281

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F  +Y+ P  A           V +    IG++    A +  SH G     P  +AP ++
Sbjct: 282 FDLRYAGPDGAM-------RRPVMVHRSVIGSVERAVAHLIESHGGAF---PPWLAPVQL 331

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVG 407
             + I   +         +  + +  G          G  +G++   A L   P Q I+G
Sbjct: 332 VALPISDAE---VPHALALVRQAADRGLRAEAAGPQRG-TLGARVRAARL--VPYQAIIG 385

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           ++  +D +V ++ R     E     EV+ 
Sbjct: 386 AREAADERVSLRLRDGRRLEARPAAEVLA 414


>gi|311273543|ref|XP_003133916.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 328

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 114/356 (32%), Gaps = 38/356 (10%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMR 151
           M        +     P +      +F    +S+R LP       +  R+EL     G+ R
Sbjct: 1   MFSFEVEK-ELFALKPMNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGLTR 59

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F    E  +            ++   G     +   + P       E  
Sbjct: 60  VRRFQQDDAHIFCAM-EQIEDEIKGCLDFLRTVYSIFGFSF-KLNLSTRPEKFLGDIEVW 117

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+                 P +                     A      + ++ D++
Sbjct: 118 NQAEKQLENSLNEFGEKWELNPGDG--------------------AFYGPKIDIQIKDAI 157

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
               + +   ++         +++L         D K   V +    +G++  + A++  
Sbjct: 158 GRYHQCATIQLDX----QLPIRFNLTF--VSPDGDDKKRPVIIHRAILGSVERMIAILTE 211

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGS 390
           ++ GK   WP  ++P ++ ++ +      C +  +K+  +       V  D D G  +  
Sbjct: 212 NYGGK---WPFWLSPRQVMVVPVGP---TCDEYAQKVQQQFHDAKFMVDIDLDPGCTLNK 265

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   A L  +   ++VG K  S   V I+ R   +  + ++ E +     +   +R
Sbjct: 266 KIRNAQLAQYNFILVVGEKEKSSGTVNIRTRDNKVHGERTISETVGRL-EQLRQSR 320


>gi|219851588|ref|YP_002466020.1| prolyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219545847|gb|ACL16297.1| prolyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 479

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 147/434 (33%), Gaps = 71/434 (16%)

Query: 25  LMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWV 81
           L+ R  ++      KG+Y W P G        AI+R+  ++    E   P L    +   
Sbjct: 23  LLWRAEIMDVRYPVKGVYVWFPFGFSIRKLTYAILRQLLDK-DHQETLFPLLIPEQEFMK 81

Query: 82  ESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E+     + +E+  +        D  +   PT E  +  ++   ++S+ +LP   YQI  
Sbjct: 82  EAEHIKGFEEEVYWVTHGGLTELDVKLALRPTSETAIYPMYALWVRSHADLPLKLYQIVN 141

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +    ++R R     +  SF                                  
Sbjct: 142 TFRYETKHTRPLIRLR-----EITSF---------------------------------- 162

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                    +H      D    QV       +  +    T +  +     I  +      
Sbjct: 163 -------KEAHTVHATWDEAAAQV-------EDALALYTTFYQHLCVPILISRRPEWDKF 208

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +D                  + +++G + + G  +S     T++  +G+        Y
Sbjct: 209 PGADYTMAVD------TVMPDGKTLQIGTVHHLGDHFSRTFDITYENQNGEQQLAYQTCY 262

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKV 375
           GI + R +AA+I    D KG+I P  VAP ++ ++ I           A   I  +L   
Sbjct: 263 GI-SERCIAALISMHGDDKGLILPPEVAPVQVVVVPIIVGKRRDEVLAAARTIRDQLEAA 321

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  D+   + G+++   ++ G PL+V +G + + +  V    R +  +  +    +I
Sbjct: 322 GLRVKLDEREIRPGAKYYHWEMRGVPLRVELGPRDLDNGVVTAVTR-SKEKSTIPAASLI 380

Query: 436 NYASHRFSNNRPVL 449
                     R  L
Sbjct: 381 EGVQALLEQVRNTL 394


>gi|302143811|emb|CBI22672.3| unnamed protein product [Vitis vinifera]
          Length = 448

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 131/421 (31%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA----D 98
           P G    + +   +  +   TG   M  P         +     + +  E+  +      
Sbjct: 5   PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 64

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E ++  +F   I SYR+LP    Q     R E       MR++ F+  
Sbjct: 65  ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWE-------MRTKPFVRT 117

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             + +                                            H      +  E
Sbjct: 118 LEFLWQ-----------------------------------------EGHTAHATPEEAE 136

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +                 D     +             +  +     +     E     
Sbjct: 137 KEALQM------------IDVYTKFAYEQAAIPVITGRKSKVETFAGAVRTYTIEAMMGD 184

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   +G+  ++   S+ + + R +  +I +  D  G+
Sbjct: 185 RKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHIWQTSWAV-STRFIGGIIMTHGDDAGL 243

Query: 339 IWPDSVAPFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ +I I K  D+     +A   +   L      V  DD  ++  G +F  
Sbjct: 244 MLPPKIAPIQVVIIPIWKKADEKTGVLNAASSVTEVLKSANIKVKVDDSDQRTPGWKFNF 303

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPV 448
            ++ G PL++ +G + VS   V I  R      G    +S+E   ++ Y   +    +  
Sbjct: 304 WEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILVAYVKDKLDEIQSS 363

Query: 449 L 449
           L
Sbjct: 364 L 364


>gi|291460058|ref|ZP_06599448.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417399|gb|EFE91118.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 626

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 70/465 (15%), Positives = 148/465 (31%), Gaps = 77/465 (16%)

Query: 16  RDAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           ++A+   HK +   L   +  + + G+  WLP G K    +    RE Q R G  E++ P
Sbjct: 177 KEAQERDHKKLGAQLELFLFDETAPGMPYWLPRGWKMYQALLKYSREVQERHGYREIAAP 236

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--------------------ADRNDKA--------- 103
            + +  LW+ SG +  Y   M  +                    A++ ++          
Sbjct: 237 LINNKKLWLISGHWAHYINNMFMVPGVSGWLKADAEIPGILENLAEQGEEPKNVKIQAGS 296

Query: 104 ----------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
                     M   P +       ++   +SYR LP  + +  +  R E   +  G+ R 
Sbjct: 297 VLYNRERMDTMAAKPMNCPNAMLTYKRKNRSYRELPIRYSEYDVLHRKEKSGQMNGLFRV 356

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EF   D ++F +     +     +      I+   G+        + P       E   
Sbjct: 357 QEFRQDDDHTFVM-ESQIEDEIKDIISIADEIYSTFGVSYR-AELSTRPEDFMGDIEVWD 414

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+    ++  +K                        E      A      + ++ D+L 
Sbjct: 415 RAEAALKRILTNKYG------------------EGGFEINEGDGAFYGPKIDLQIKDALG 456

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
              +     ++      FG  Y                 V +     G++     +I  +
Sbjct: 457 REWQCGTIQLDFQLPHNFGLSYQTAEGVA-------AMPVVIHRAIYGSLERFIGIIIEN 509

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             G    W   ++  ++ ++ I+          +K+++ L K G  V  D     +  + 
Sbjct: 510 FKGVFPFW---LSSEQVGIVPIRT---EHNAYAKKVFSLLQKHGIRVEADYSESNMKEKI 563

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMSLEEVIN 436
                   P  +++G +  +++ V I  R       ++ +E  + 
Sbjct: 564 KKYKNFKDPYILVLGDREAAENTVSINMRGSNRQLNNIPIERFLA 608


>gi|296423870|ref|XP_002841475.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637715|emb|CAZ85666.1| unnamed protein product [Tuber melanosporum]
          Length = 658

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 145/447 (32%), Gaps = 94/447 (21%)

Query: 11  LQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E+ +   +A    H+ + +       H+ S G   +LP G +  + +   +R+E  + 
Sbjct: 290 LEEHKKLLEEAAKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVGYLRQEYWKR 349

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +A LW  SG + +Y + M       DK     P +      +F    +S
Sbjct: 350 GYEEVITPNMYNAKLWETSGHWQNYQENMFTFEVEKDKY-GLKPMNCPGHCLLFGHRERS 408

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP+      +  R+E      G+ R R F   D + F  T E      + +F     
Sbjct: 409 YRELPWRVADFGVIHRNEFSGALTGLTRVRRFQQDDTHVF-CTEEQVGSEIHGLFDFLKT 467

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG     ++  + P         I   D+ E Q+                      
Sbjct: 468 VYGLLGFTF-KLKLSTRPEKFVG---DIATWDSAEAQL---------------------- 501

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                                   F +    K     G         G  Y   +  T  
Sbjct: 502 ------------------TKALDEFTAGGGGKWEMNPG--------DGAFYGPKIDITIS 535

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            A  ++H   +GS     +    A++     GK   WP  ++P +I +I + A      +
Sbjct: 536 DALRREHQSILGS-----VERFIAILTEHFGGK---WPFWLSPRQILVIPVMA---AANN 584

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I     ++G D  ++     +                 VG++      V I++R  
Sbjct: 585 YVLEIQK--LRLGLDS-YNSTTLSLAF---------------VGAEEEESRSVNIRNRDN 626

Query: 424 GIRED----MSLEEVINYASHRFSNNR 446
              ++    + ++  +          R
Sbjct: 627 KETQNKGELVPIDVALEKLCALRDERR 653


>gi|313243553|emb|CBY42261.1| unnamed protein product [Oikopleura dioica]
          Length = 476

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/399 (16%), Positives = 125/399 (31%), Gaps = 73/399 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRND- 101
           P      +++           G      P   S A L  E    + +  E+  +    D 
Sbjct: 1   PPSYNIWEHIKDFFDMNIKDLGVENCYFPMFVSQAALEKEKEHIEDFAPEVAWVTRSGDT 60

Query: 102 ---KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
              + +   PT E VM  I+    +S+R+LP    Q     R E +     +R+REFL +
Sbjct: 61  ELAEPIAIRPTSETVMYPIYAKRCQSHRDLPIKMNQWCNVVRWEFKHPTPFLRTREFLWQ 120

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + +S   T             + + +   L L    +  +   I                
Sbjct: 121 EGHSAFATKA----------EAEVEVMQILDL-YRKVYEDLLAI---------------- 153

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +P   T  +     +          A                    +
Sbjct: 154 -----------ATVPGRKTVKEKFAGGDYTTTVEAYIKA--------------------A 182

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGA---DGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            R I+     + G  +S   + +F+      G   +    S+GI   R +  +I    D 
Sbjct: 183 GRAIQGATSHHLGQNFSKMFNISFEDESKGKGIKEFAYQNSWGIT-TRTIGVMIMVHADD 241

Query: 336 KGIIWPDSVAPFKISLIN-----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIG 389
           KG++ P  V+ ++  ++               +AC+ +  +L   G     D    ++ G
Sbjct: 242 KGLVIPPKVSRYQAVIVPCGATKTDEDKNKLFNACKALENQLKSFGIRAHADLRDDKKPG 301

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +F   +L G PL++ VG K +  +      R T  +  
Sbjct: 302 WKFNDWELKGVPLRIEVGPKDLEANSAVFVRRDTLEKVT 340


>gi|148377386|ref|YP_001256262.1| prolyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291432|emb|CAL58817.1| Prolyl tRNA synthetase (Proline tRNA ligase) [Mycoplasma agalactiae
           PG2]
          Length = 478

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 148/415 (35%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P      + +   + E         + +P      L   E      +  E+  
Sbjct: 34  KGTLIFKPNSYGIWEQIQKALNEIFRGLKVQNVYLPLFIPDRLLAKEKEHIAGFNPELAT 93

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK     +   PT E +  D+F+  I S+++LP  + Q     R E +     +R
Sbjct: 94  ITKVGDKELDQKIYVRPTSEVLFADLFKKMIVSHKDLPILYNQWANVVRWE-KTTNPFLR 152

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEF 210
           SREFL ++ ++   +   ++    +M   Y +     L + +I        IG    +E 
Sbjct: 153 SREFLWQEGHTCHKSAIEARKLTREMINVYAKFLKNYLAIPTI--------IGKKTPYEK 204

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A                                          A   D    +   S
Sbjct: 205 FAGA-----------------------------------CSTYTVEAMMKDGKALQAGTS 229

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
               +  S R                    +FK    +D +V   S+G+ + R++ A+I 
Sbjct: 230 HYLAQNFSKR-----------------FEISFKNDKNEDEFVYQTSWGV-STRLLGAIIM 271

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +  D +GII P  VAP ++ ++ + A+ Q    D C ++  +L +    V  D   +  G
Sbjct: 272 THGDNRGIIIPPKVAPVQVDILELFANKQPKVHDFCNELAKQLERK-FRVRLDSTDKSPG 330

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + + +++ G PL++ VG K + +  V I  R T  +  +S+  V +      ++
Sbjct: 331 YKASNSEIQGVPLRIEVGPKDLENKTVTIVRRDTLEKTIVSVSYVKSKVRELLNS 385


>gi|260896982|ref|ZP_05905478.1| threonine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308087658|gb|EFO37353.1| threonine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
          Length = 290

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 101/311 (32%), Gaps = 41/311 (13%)

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R+E      G+MR R F   DA+ F  T    +             +   G  +I ++  
Sbjct: 12  RNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTSCIKMVYDTYQTFGFDNIVVKLS 70

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           + P     S E    ++    Q   S +        E   +   I               
Sbjct: 71  TRPEKRVGSDEIWDQSEEALKQSLESMEIPYEIQEGEGAFYGPKIEFTLYDC-------- 122

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKD-HYVQMG 315
                                R  + G +      ++LP  + AT+ G + +    V + 
Sbjct: 123 -------------------LDRAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIH 160

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              +G++     ++   + G    W   +AP +  L+NI           ++I  +L K 
Sbjct: 161 RAILGSLERFIGILIEEYAGFFPTW---LAPEQAVLMNITDKQSG---YVQEIVQKLQKS 214

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G     D   E+IG +     L   P  ++VG + +   ++ ++ R         +++ I
Sbjct: 215 GIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFI 274

Query: 436 NYASHRFSNNR 446
            Y     S+ +
Sbjct: 275 AYIQDEISSRK 285


>gi|119184159|ref|XP_001243013.1| hypothetical protein CIMG_06909 [Coccidioides immitis RS]
          Length = 668

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 120/227 (52%), Gaps = 1/227 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RSK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +   
Sbjct: 42  RSKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHME 101

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA ++ +  L S  LW  SGR      E+ R  DR +   +  PTHEE +T +     
Sbjct: 102 SLGASKLFLSALSSQLLWKLSGRL-HDDSEVFRFLDRKNAPFLLAPTHEEEITKLVGGLT 160

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+
Sbjct: 161 NSYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYV 220

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           R+F  L L  I   A+SG +GG L+HEF + +  GE  V        
Sbjct: 221 RLFDELKLPYIVAAADSGSMGGSLNHEFHLESSKGEDIVVSCSKCNY 267



 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 107/271 (39%), Gaps = 40/271 (14%)

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L +    +R    P   DL       + T E +         FP    + DF  + S + 
Sbjct: 423 LDIYDFRVRPYDRPPLNDLLD-----SKTAEKKKISFSSITKFPGTDHDLDFVRVQSGDR 477

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF----- 302
             +         +                     IE+GH F  GT+YS P+ AT      
Sbjct: 478 CSKCEDGVVTTHT--------------------TIEMGHTFLLGTRYSSPLQATVAIDPA 517

Query: 303 --KGADGKDH------YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               ADG          +QMG YGIG  R++AAV +   D +G+ WP ++APF   ++  
Sbjct: 518 KSGNADGAKESPKSVVPLQMGCYGIGVSRMIAAVADILADSRGLNWPRAMAPFSAIIVPG 577

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A  +  +   + I +       D   DD  + +  +   ADL G P+  +VG  +    
Sbjct: 578 LAFQEDSKKIYDHIASY-HNGSIDTILDDREQPLIRKLKDADLTGIPVICVVGKSWERHR 636

Query: 415 KVEIK-HRLTGIREDMSLEEVINYASHRFSN 444
            VE++  RL  +R D+SL+E+ ++ S     
Sbjct: 637 NVEVQCRRLNNLRTDVSLDELPSFISSLLDK 667


>gi|310796673|gb|EFQ32134.1| prolyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 565

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 137/436 (31%), Gaps = 72/436 (16%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADL 79
            +++L+  M+  ++   G +   P        +     E     G  E S P  L S  L
Sbjct: 72  QEVVLKAEMVEYYNEISGFFILRPASMYIWTVIRKWFSERIEDMGVDETSFPMFLSSKSL 131

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LPF   Q 
Sbjct: 132 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPFRLNQW 191

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 192 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGKEVLEILELYAGVYEQ--LLAVPV 249

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              +                  E + F    +         ++   I    S        
Sbjct: 250 VRGT----------------KTENEKFAGGYYTTTVEGYIPSNGRGIQGATSHCLGQNFS 293

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 V +           + S                                     
Sbjct: 294 KMFDITVEDPDKKGEKIHVWQNSW------------------------------------ 317

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKI 368
                + RV+  ++    D KG++ P  +A  ++ LI +           +   D  + +
Sbjct: 318 ---GLSTRVIGVMVMIHGDDKGLVLPPRIAKVQVVLIAVGITAKTTPEDRKKLEDKVDDL 374

Query: 369 YARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L K G     D         +F   +L G PL++  G K  +   V    R TG + 
Sbjct: 375 RNELRKAGVRAESDLRDGYTPAWKFNEWELRGVPLRLEFGPKDAAKEVVAFARRDTGEKG 434

Query: 428 DMSLEEVINYASHRFS 443
            ++L E+         
Sbjct: 435 SVALAELSTKVPELLE 450


>gi|315648100|ref|ZP_07901201.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315276746|gb|EFU40089.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 485

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 152/450 (33%), Gaps = 83/450 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ ++++    A++  +  +           G   + P G +  +++ A +     
Sbjct: 21  FSRWYIDVIKK----ADLMDYSPVR----------GCIVFKPDGYEIWEHIQAELDRRFK 66

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E    + +  E+  + +    + ++ +   PT E +   +
Sbjct: 67  ATGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAAGEKLEERLAIRPTSETMFGHM 126

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E        R+  FL    + +              
Sbjct: 127 YSKWIQSYRDLPVLINQWANVVRWEK-------RTLPFLRTSEFLWQE------------ 167

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G  +HE  V A  GET               +  
Sbjct: 168 --------------------------GHTAHETEVEA-RGET--------------MQML 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D       + +           S+     +     E      R ++ G   Y GT +S  
Sbjct: 187 DIYQQFVEDYLAIPVIKGQKTPSEKFAGAVDTFSIEAMMKDGRAVQAGTSHYMGTNFSQA 246

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +   +    Y    S+G+ + R++ ++I    D +G++ P  VAP ++ +I I   
Sbjct: 247 FEIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVHGDDRGLVLPPKVAPTQVIMIPIGPP 305

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +      ++++  L   G  V  DD    + G +F   ++ G P+++ +G + + + 
Sbjct: 306 KTREAVVGRTDELFRELKSAGIRVRVDDNPDVRPGWKFNEYEMRGVPVRLEIGPRDMENG 365

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +  R+TG ++ +    +     +    
Sbjct: 366 VCVLVSRITGEKKIVEQANLTQEVQNMLEQ 395


>gi|189501728|ref|YP_001957445.1| prolyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|259511573|sp|B3ER64|SYP_AMOA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189497169|gb|ACE05716.1| hypothetical protein Aasi_0277 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 491

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 162/462 (35%), Gaps = 88/462 (19%)

Query: 10  ILQENPRDAEIAS---HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           + ++ P  AE  S   ++++ R  +    + +G  +  P G    + + AI+ +    TG
Sbjct: 1   MHKKLPTRAENFSEWYNEIIKRAELAENAAVRGCMTIRPYGFAIWEKMQAILDKAFKATG 60

Query: 66  AIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD------------------RNDKAMIY 106
                 P       L  E+   + + KE   +                    + ++ +I 
Sbjct: 61  HENAYFPIFIPKSYLNREAAHVEGFAKECAVVTHYRLKATEDGQQVVVDPSAKLEEELIV 120

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E ++ + +++ I+SYR+LP    Q     R E       MR+R FL    + +   
Sbjct: 121 RPTSETIIWNSYKNWIQSYRDLPLLINQWCNVVRWE-------MRTRLFLRTAEFLWQE- 172

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                                                G  +H     A+           
Sbjct: 173 -------------------------------------GHTAHATQAEAE-------QEAL 188

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            M         D+  I  L  I  +      A      E L            + ++ G 
Sbjct: 189 QMLNIYADFGKDYLAIPFLKGIKTEHERFAGAEETYTIEAL--------MQDGKALQAGT 240

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             + G +++     TF    G+  YV   S+G+   R++ A++ +  D KG++ P  VAP
Sbjct: 241 SHFLGQRFAKAFEVTFTNQAGQLDYVWGTSWGLT-TRLIGALVMTHSDDKGLVLPPRVAP 299

Query: 347 FKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPL 402
            +I +I I   +   +  +   + I  +L         D   E + G +FA  +L G P+
Sbjct: 300 IQIVIIPIYRTQEEKEAIQQQAQHIQQQLIAHNISAKLDGRDEHKPGWKFAEYELKGVPI 359

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ +G   ++++ VE+  R T  +  +  + +I        +
Sbjct: 360 RMAIGPNDLANNTVELTRRDTSEKTTVPTDNIIVVVKSMLDS 401


>gi|223943839|gb|ACN26003.1| unknown [Zea mays]
          Length = 419

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 136/396 (34%), Gaps = 76/396 (19%)

Query: 69  MSVPTLQSADLWVESG-RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIK 123
           M  P         +     + +  E+  +        ++ ++  PT E ++  +F   I+
Sbjct: 1   MYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTKWIQ 60

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    Q     R E+R     +R+ EFL ++ ++   T E ++    +     + 
Sbjct: 61  SYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATLEEAEKEAMQ----MID 115

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++                                    F  +      IP   +  +   
Sbjct: 116 VYT----------------------------------KFAFEHAAIPVIPGRKSRVETFA 141

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
             N                                 + ++ G     G  +S      F 
Sbjct: 142 GANRTYTIEAM---------------------MGDKKALQAGTSHNLGQNFSRAFGTQFM 180

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQV 360
             +G+  +V   S+ I + R V  +I +  D  G++ P  +AP ++ ++ I        V
Sbjct: 181 DENGQIEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPRIAPIQVIIVPIWKKGDEKAV 239

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +A + +   L + G  V  DD   +  G +F   ++ G P+++ +G + V++  V + 
Sbjct: 240 VVEAVDSVQKILKEAGIRVKVDDSELRTPGWKFNHYEMKGVPVRIEIGPRDVTNKSVVVS 299

Query: 420 HRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
            R      G    +S+E   ++N+   R  + +  L
Sbjct: 300 RRDVPGKQGKEFGVSMEPSILVNHIKGRLDDIQASL 335


>gi|156839714|ref|XP_001643545.1| hypothetical protein Kpol_1008p26 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114160|gb|EDO15687.1| hypothetical protein Kpol_1008p26 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 674

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 144/431 (33%), Gaps = 70/431 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  M+  +   G Y   P      + +      +    G      P  + S  L  
Sbjct: 187 QVLTKGEMLDYYDVSGCYILRPPSYAIWEAIQKYFDAKIKGLGVQNAYFPMFVSSRVLEK 246

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        ++ +   PT E VM   +   I+SYR+LP    Q   
Sbjct: 247 EKDHIEGFAPEVAWVTKAGQSELEEPIAIRPTSETVMYPYYAKWIQSYRDLPLKLNQWNS 306

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++  L  + ++    ++   Y  ++    L ++P+  
Sbjct: 307 VVRWEFKHPQPFLRTREFLWQEGHTVFLNEKEAQEEVLQILDFYAGVYEE--LLAVPV-- 362

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                         V     E + F   DF              I    S          
Sbjct: 363 --------------VKGKKTEKEKFAGGDFTTTVEGYIPQTGRGIQGATSHHLGQNFSKM 408

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
               V N    D        ++ G+                                   
Sbjct: 409 FNLSVENPLGPDHPKIFAYQNSWGL----------------------------------- 433

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACEKIYA 370
              + RV+  ++    D KG++ P  V+ F+  ++ +   K   +  R    +A   + +
Sbjct: 434 ---STRVIGVMVMIHSDNKGLVIPPRVSQFQAVVVPVGITKKTSEEQRKKIHEAARDVES 490

Query: 371 RLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           RL K     F D +     G +FA  +L G PL+V +G K + +S+V +  R    +  +
Sbjct: 491 RLKKSDVRAFGDYNDNYTPGWKFAQYELKGIPLRVEMGPKDIEESQVTVVRRNDSRKYTV 550

Query: 430 SLEEVINYASH 440
            L E+ +    
Sbjct: 551 KLSELESRIPE 561


>gi|330861018|emb|CBX71290.1| threonyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 457

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 5/230 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M   +  N +     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQVRDEVNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           +   G + I ++  + P     S +    A+                 P 
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAEDDLAAALTENGIPFDYQPG 457


>gi|54400362|ref|NP_001005932.1| threonyl-tRNA synthetase, cytoplasmic isoform 2 [Danio rerio]
 gi|53734186|gb|AAH83525.1| Zgc:92586 [Danio rerio]
          Length = 624

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 115/347 (33%), Gaps = 36/347 (10%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKD 159
            +     P +      +F    +S+R LP       +  R+EL     G+ R R F   D
Sbjct: 304 KEIFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDD 363

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A+ F  + +  +            ++   G     +   + P       E    A+    
Sbjct: 364 AHIF-CSMDQIESEIKGCLDFLRTVYDVFGFTF-KLNLSTRPEKFLGEPEVWDQAEKQLE 421

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                        P +                     A      + ++ D++    + + 
Sbjct: 422 NSLNDFGEKWVLNPGDG--------------------AFYGPKIDIQIKDAIGRYHQCAT 461

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             ++    F    +++L         D K   V +    +G++  + A++  ++ GK   
Sbjct: 462 IQLD----FQLPIRFNLTF--VSHDGDDKKRPVIIHRAILGSVERMIAILTENYGGK--- 512

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLL 398
           WP  ++P ++ ++ I      C +  +++     KVG     D D G  +  +   A L 
Sbjct: 513 WPLWLSPRQVMVVPIGP---TCDEYAQRVQKEFHKVGLMTDVDLDPGCTLNKKIRNAQLA 569

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +   ++VG K  S   V ++ R   +  + SL + +       ++ 
Sbjct: 570 QYNFILVVGEKEKSSDTVNVRTRDNKVHGERSLTDCMERLKQLKASR 616


>gi|242398996|ref|YP_002994420.1| Prolyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|242265389|gb|ACS90071.1| Prolyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 488

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 156/449 (34%), Gaps = 83/449 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  +++     AEI                KG+  WLP G + + N+  +I  E  
Sbjct: 19  FSEWYNEMIE----LAEIQDK---------RYPVKGMNVWLPYGLRIMRNIENLIHMEMV 65

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
           RTG  E+  P L   ++   E+     +  E+L +    ++ +    I  PT E  M  +
Sbjct: 66  RTGHNEVLFPALIPESEFEREAEHIAGFHGEVLWVTHAGERPLDVKLILRPTSETAMYPM 125

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM-KDAYSFDLTPEGSKHSYNK 176
           F   I+S+ +LPF  YQI   +R E +    ++R RE     ++++   + E ++    +
Sbjct: 126 FNLWIRSHADLPFKIYQIVNVYRYETKHTRPLIRVREISRFFESHTAHDSFEDAERQIRE 185

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               +  +   L L  I       P        F                   + + +E 
Sbjct: 186 DLEIFDNLAKNLALPYI---VSKRPDWDKFPGAF-------------------YSLGAEV 223

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              D        +  +   +A   ++  E    +     + +      G           
Sbjct: 224 IMPDGRTLQIGTMHHYKQNFAKAYEITYETEEGTHEYVHQTT-----FGMSERL------ 272

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                                       VAA++    D  G++ P ++AP ++ +I I  
Sbjct: 273 ----------------------------VAAIMGVHGDDSGLVLPPTIAPVQVVVIPIPM 304

Query: 357 HDQ--VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            +         ++I   L   G  +  DD    + G +F   ++ G PL++ VG K V +
Sbjct: 305 KESPYDVNAYAKEIAEELKTAGLRIHVDDREDVRPGRKFYDWEIKGVPLRIEVGPKDVEE 364

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++     R T  +  +  E ++  A    
Sbjct: 365 NQAVFARRDTFEKFTVKRENLVEEARKTL 393


>gi|15921730|ref|NP_377399.1| prolyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|74581041|sp|Q971B5|SYP_SULTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15622517|dbj|BAB66508.1| 483aa long hypothetical prolyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 483

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 161/458 (35%), Gaps = 78/458 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  K F   L    R+AEI  +             KG+  W+P G K   NV  +IR+  
Sbjct: 7   KWEKNFSEWLDWVLREAEIYDYG--------RYPVKGMGVWMPYGFKIRQNVLQLIRKLL 58

Query: 62  NRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTD 116
           + TG  E+  P L   DL   ES     + +E+  +        D  +   PT E  +T 
Sbjct: 59  DETGHEEVLFPLLIPEDLLKKESEHIRGFEEEVYWVTKGGSQDLDVKLALRPTSETSITF 118

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    +KS                                                 Y +
Sbjct: 119 MESFWVKS-------------------------------------------------YKQ 129

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +   Y +I      ++   R            E   L +T E         +D  I    
Sbjct: 130 LPKKYYQIVSVFRYETKATRPMMRLREITTFKEAHTLHETYEDAA----RQVDEAINIYK 185

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             FD++     I ++      A ++                 +R +++G + + G  ++ 
Sbjct: 186 AFFDELGIPYMISKRPEWDKFAGAEYTIAFD------TILPDSRVLQIGTVHHLGQHFTK 239

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                 +  DG   Y    SYGI + RV+A +I  + D  G +    +AP K+ ++ I A
Sbjct: 240 AFDFKIQRKDGSLDYPHQTSYGI-SDRVIAVLIAINGDDHGPVLNPVIAPIKVVIVPIPA 298

Query: 357 HDQ----VCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFV 411
            D+       +  +++   L   G  V  DD  E+  G +F + +L G PL++ +G K +
Sbjct: 299 KDEETTAKIINYAKEVGENLKNRGITVVIDDDKEKTPGEKFYIWELKGVPLRIEIGPKEL 358

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++ V IK R T   + +  ++ +   +      +  L
Sbjct: 359 NNNTVYIKRRDTFEGKSVPKDKAVEEVNTLLEKIKNDL 396


>gi|322700868|gb|EFY92620.1| prolyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 556

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 142/436 (32%), Gaps = 72/436 (16%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
            +++L+  M+  +Q   G +   PL       +           G  E S P   S   L
Sbjct: 62  QEVVLKAEMVEYYQEISGFFVLRPLSMHIWSTIRKWFSGHIEELGVEEASFPLFLSKTSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    D +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 122 DKEKDHVDGFAPELAWVERAGDKKLDVPVAIRPTSEAVMYPYYAKWIRSHRDLPLRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 182 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEK--LLAVPV 239

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +         ++   I    S        
Sbjct: 240 ----------------VRGKKTENEKFAGGYYTTTVEGYIPSNGRGIQGATSHCLGQNFS 283

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 V + +                   H++                           
Sbjct: 284 KMFQITVEDPQNKGQHV-------------HVWQ-------------------------N 305

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKI 368
           S+G+ + RV+  ++    D KG++ P  VA  ++  I +  +        Q   D  E +
Sbjct: 306 SWGL-STRVIGVMVMVHGDDKGLVLPPRVAQTQVIFIPVGINKNTTPEDRQKHEDQIEDM 364

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            A L K G     D   G     +F   ++ G P+++  G K  +   V    R TG + 
Sbjct: 365 RATLKKAGVRTQSDWREGYTPAWKFNDWEMKGVPVRLEFGPKDAAKEVVSFARRDTGEKG 424

Query: 428 DMSLEEVINYASHRFS 443
            + + ++         
Sbjct: 425 TIPIADIATKIPELLE 440


>gi|153877657|ref|ZP_02004322.1| Prolyl-tRNA synthetase [Beggiatoa sp. PS]
 gi|152065879|gb|EDN65678.1| Prolyl-tRNA synthetase [Beggiatoa sp. PS]
          Length = 183

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/166 (40%), Positives = 94/166 (56%), Gaps = 1/166 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  G KYS  M A      GK   + MG YGIG  R+VAA IE +HD  GII
Sbjct: 18  RGIEVGHIFQLGQKYSQAMQANVLDEQGKSVILTMGCYGIGVSRLVAAAIEQNHDEHGII 77

Query: 340 WPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           WP S+APF + L+ +  H  Q  R+A E +Y +L   G DV +DD  E+ G  FA ADL+
Sbjct: 78  WPQSIAPFSVILLPMSMHKSQRLREAAEAMYNQLQSAGIDVLFDDRRERAGVMFANADLI 137

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P ++++G   +   ++E K R       + + E +++   +  N
Sbjct: 138 GIPHRLVIGESGLDKGEIEYKGRRDQKAHSIPMAEAVSFIQTQLQN 183


>gi|326471753|gb|EGD95762.1| threonyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 511

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 143/435 (32%), Gaps = 58/435 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            D         L T  I  +S G   + P G   L+ +   +R +  + G  E+  P + 
Sbjct: 44  ADHRALGTAQDLFTNSI--YSPGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPNIY 101

Query: 76  SADLWVESGRYDSYGKEMLRLADRND----------KAMIYGPTHEEVMTDIFRSHIKSY 125
              LW  SG + +Y  +M  +  R D          +     P +      +F+S   SY
Sbjct: 102 KQSLWEVSGHWQNYKDDMYEVGGRGDTGETSETSENEIYGLKPMNCPGHCLLFKSQKHSY 161

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  +       R+E+     G+ R R F   D + F   P                +
Sbjct: 162 RELPVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIF-CRPGQIGSEIQLALKFADTV 220

Query: 185 FHRLGLKS-IPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               GL     +   + P      S E    A+    Q   +          +       
Sbjct: 221 LQTFGLADGYRLVLSTRPEKDFIGSLEQWENAEQQLRQALDNSGLSWELNEGDG------ 274

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ DS  +  ++S   +++     F  +Y +P  +  
Sbjct: 275 --------------AFYGPKIDLQIQDSQGKYHQLSTIQLDMNLPQRFELEYLVPEGSEE 320

Query: 303 KGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
                 G+   V +     G++    A++   ++G+   WP  ++P +  L+ I    +Q
Sbjct: 321 YDPATGGRATPVLIHRAIFGSLERFFALLIERYNGQ---WPFWLSPRQAILLTIGKGLEQ 377

Query: 360 VCRDACEKI-------YARLSKVG---------CDVFWDDMGEQIGSQFAVADLLGFPLQ 403
              DA  KI        +R S  G          +V  D     +  +   A    + L 
Sbjct: 378 AAEDAVAKISGFEPITSSRPSSTGLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYNLV 437

Query: 404 VIVGSKFVSDSKVEI 418
            I+G K V+D  V+I
Sbjct: 438 FIMGPKNVADGSVDI 452


>gi|269125121|ref|YP_003298491.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268310079|gb|ACY96453.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 477

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/460 (16%), Positives = 152/460 (33%), Gaps = 84/460 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     E    A++     +  T +I           P G +  + + A +     
Sbjct: 4   QSEDFSAWYNEVVVKAQLVDRGPVRGTMVIR----------PYGYRIWELLQADLDRRIK 53

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             G      P       L  E+   + +  E+  +        ++ ++  PT E V+ + 
Sbjct: 54  EAGHDNACFPMFIPESYLRREAEHVEGFSPELAVVTVAGGKELEEPLVVRPTSETVIGEY 113

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I S+R+LP    Q     R E       +R R                       M
Sbjct: 114 MAKWIDSHRDLPLLLNQWANVVRWE-------LRPR-----------------------M 143

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           F+       + G  +    A++     +        A                 +P E T
Sbjct: 144 FLRTTEFLWQEGHTAHIDEADA---MRETEWALDTYAAVARELAAM------PVVPGEKT 194

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +                                       R ++ G   Y GT ++  
Sbjct: 195 AGERFAGAVRTYTIEGM---------------------MRDGRALQAGTSHYLGTNFAKA 233

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  ++  +G   Y    S+G+ + R++  VI +  D KG++ P  +AP+++ ++ I   
Sbjct: 234 FNIQYQDEEGALQYAHTTSWGM-STRMIGGVIMTHGDDKGLVLPPRLAPYQVVIVPIGRK 292

Query: 358 DQVCRDACE--KIYARLSKVGCDVFWDD-MGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +Q    A E  ++ A +  +G  V  DD   +   G +F   ++ G P+++ +G + ++D
Sbjct: 293 EQGEATAAEARRLGAAIKSMGIRVHVDDNRPQLSPGFKFNDWEMRGVPIRIEIGPRDLAD 352

Query: 414 SKVEIKHRL-TGI---REDMSLEEVINYASHRFSNNRPVL 449
               +  RL T     +E + L  +        ++ +  L
Sbjct: 353 GVGTLARRLPTAEGQGKETIPLARLPEELPQILADFQAFL 392


>gi|255017946|ref|ZP_05290072.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 248

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 20  ENMRVFADNAVKDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDGQGV 79

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 80  IKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 139

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W   ++PF + LI +    +      E +Y  L   G  V  DD  E+ G +FA A
Sbjct: 140 NGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFSVLIDDRAERAGVKFADA 199

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 200 DLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 248


>gi|154503764|ref|ZP_02040824.1| hypothetical protein RUMGNA_01588 [Ruminococcus gnavus ATCC 29149]
 gi|153795864|gb|EDN78284.1| hypothetical protein RUMGNA_01588 [Ruminococcus gnavus ATCC 29149]
          Length = 521

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 138/412 (33%), Gaps = 66/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    +N+ A + +    TG   + +P L   +L   E    + +  E+  
Sbjct: 79  KGCLNYLPNGYAIWENIQANLDKRFKETGVENVYLPVLIPENLLQKEKDHIEGFAPEVAW 138

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +   +     PT E +  D++   ++SYR+LP  + Q     R E +     +R
Sbjct: 139 VTHGGMEELQERFCIRPTSETLFCDLWSKTVQSYRDLPKVWNQWCSVLRWE-KTTRPFLR 197

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E ++     M      ++       + +   +   G     E  
Sbjct: 198 SREFLWQEGHTIHATYEEAEERTLLMRD----VYKSFVEDDLAIPLVT---GRKTPSEKF 250

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   +T    +       + S  + F      ++    ++        V+        
Sbjct: 251 AGAQ--DTYTIEALMHDGKALQSGTSHFFGNAFADAYGISYSDKENKLHSVYE------- 301

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                           +   T+    +        G      +                 
Sbjct: 302 --------------TSWGLSTRIIGAIIMVHGDDSGLVLPPHI----------------- 330

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                        AP +  +I I  H +   D   ++ A L   G     DD  +  G +
Sbjct: 331 -------------APVQTRVIPIAQHKEGVLDKANELLAALKAAGYRASIDDSEKSPGWK 377

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F+  +++G P ++ +G K + + +V +  R T  +  ++++E+    S    
Sbjct: 378 FSEQEMVGIPTRIEIGPKDIENGQVVVVRRDTREKIVVAMDELTEKLSEILE 429


>gi|291320056|ref|YP_003515314.1| prolyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752385|emb|CBH40356.1| Prolyl tRNA synthetase (Proline tRNA ligase) [Mycoplasma
           agalactiae]
          Length = 478

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 149/415 (35%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P      + +  ++ E         + +P      L   E      +  E+  
Sbjct: 34  KGTLIFKPNSYGIWEQIQKVLNEIFRGLKVQNVYLPLFIPDRLLAKEKEHIAGFNPELAT 93

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK     +   PT E +  D+F+  I S+++LP  + Q     R E +     +R
Sbjct: 94  ITKVGDKELDQKIYVRPTSEVLFADLFKKMIVSHKDLPILYNQWANVVRWE-KTTNPFLR 152

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEF 210
           SREFL ++ ++   +   ++    +M   Y +     L + +I        IG    +E 
Sbjct: 153 SREFLWQEGHTCHKSAIEARKLTREMINVYAKFLKNYLAIPTI--------IGKKTPYEK 204

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A               + + +   D   + +  S                N+K  D 
Sbjct: 205 FAGA------------CSTYTVEAMMKDGKALQAGTSHYLAQNFSKKFEISFKNDKNED- 251

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                                                   +V   S+G+ + R++ A+I 
Sbjct: 252 ---------------------------------------EFVYQTSWGV-STRLLGAIIM 271

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +  D +GII P  VAP ++ ++ + A+ Q    D C ++  +L +    V  D   +  G
Sbjct: 272 THGDNRGIIIPPKVAPVQVDILELFANKQPKVHDFCNELAKQLERK-FRVRLDSTDKSPG 330

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + + +++ G PL++ VG K + +  V I  R T  +  +S+ +V +      ++
Sbjct: 331 YKASNSEIQGVPLRIEVGPKDLENKTVTIVRRDTLEKTMVSVSDVKSKVRELLNS 385


>gi|87311204|ref|ZP_01093327.1| prolyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87286112|gb|EAQ78023.1| prolyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 506

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 148/455 (32%), Gaps = 89/455 (19%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-L 79
           ++ +++   + + S   G     P G    +N+ A++      TG      P       L
Sbjct: 21  YQQVIKAADLAEVSPVRGCMVIKPWGWSIWENMQAVLDGMFKETGHENAYFPLFIPMSFL 80

Query: 80  WVESGRYDSYGKEMLRLADRN---------------DKAMIYGPTHEEVMTDIFRSHIKS 124
             E+   + + KE   +                   D+ +I  PT E ++  ++   ++S
Sbjct: 81  EKEAEHVEGFAKECAVVTHHRLEPGPNGGLVPAGKLDEPLIVRPTSETIIGAMYAKWVQS 140

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R ELR R   +R+ EFL ++ ++   T E +     +M       
Sbjct: 141 YRDLPILINQWANVVRWELRTRM-FLRTTEFLWQEGHTAHATAEEAIAETRQMLE----- 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                      V AD  E                          
Sbjct: 195 ---------------------------VYADFAE-------------------------- 201

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            N +          + +           E+     + ++ G   + G  +S      F+ 
Sbjct: 202 -NYMAMPVIKGEKTSWERFPGASMTLSIESMMQDRKALQAGTSHFLGQNFSKAQEIKFQT 260

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---C 361
            +G + +    S+G+ + R+V  +I +  D  G+I P  +AP  I L+ I   D+     
Sbjct: 261 QEGTEEFAWTTSWGV-STRLVGGLIMTHSDDDGLIVPPRLAPKHIVLLPIYRSDEERAAV 319

Query: 362 RDACEKIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
               +++ + L           V  DD   + G +       G PL+  +G + V+   V
Sbjct: 320 LAYVDQLNSALKGVQYHGAPVRVLIDDRDIRGGEKTWQHIKKGVPLRAEIGPRDVASDSV 379

Query: 417 EIKHRLT--GIREDMSLEEVINYASHRFSNNRPVL 449
            +  R      ++     E++   +      +  L
Sbjct: 380 FLARRDQSPKDKKGTPKAELVATITTLLDEIQSNL 414


>gi|282898000|ref|ZP_06305995.1| Threonyl-tRNA synthetase, class IIa [Raphidiopsis brookii D9]
 gi|281197144|gb|EFA72045.1| Threonyl-tRNA synthetase, class IIa [Raphidiopsis brookii D9]
          Length = 332

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 134/363 (36%), Gaps = 44/363 (12%)

Query: 93  MLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           M  +   N+++       +  P +      I++S ++SYR LP    +    +R E    
Sbjct: 1   MFPMMAENEESKALDQGFVLKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGE 60

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F + D++ F +TPE     +  +    L +F  L LK+   R        D
Sbjct: 61  LGGLTRVRGFTVDDSHLF-VTPEQLDGEFLNVVDLILTVFRSLQLKNFKARLSFRDPTSD 119

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  + D  E  +  +                  +    +        AA      +
Sbjct: 120 KYIGGDEVWDKAEGAIRRA------------------VQQLGMDHFEGIGEAAFYGPKLD 161

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAM 322
            +F        V  R  ++G +      Y+LP      +   DG +   V +     G++
Sbjct: 162 FIF------SDVLEREWQLGTV---QVDYNLPERFDLEYVAEDGSRKRPVMIHRAPFGSL 212

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             +  ++   + G   +W   +AP +I L+ +    +   +  ++I  +++++G     D
Sbjct: 213 ERLIGILIEEYAGDFPLW---LAPVQIRLLPVG---EQQIEFTKEIARKMTELGIRAQAD 266

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G+++       +    P+  +VG+K V  + + I+ R +G    + +E+V+       
Sbjct: 267 LSGDRLAKLIRNGEKDKIPVMAVVGAKEVETNSLSIRTRASGELGVIPVEKVVEKMQESI 326

Query: 443 SNN 445
            N 
Sbjct: 327 INY 329


>gi|317155666|ref|XP_001825276.2| prolyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 627

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/229 (36%), Positives = 130/229 (56%), Gaps = 4/229 (1%)

Query: 2   RRSKYFLPI---LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P     ++N +  +   + L++R G + Q   GI+  LPLG +  D +  +I 
Sbjct: 40  RVSNFWIPTGGISKKNIQGEKEDVNDLLVRGGFLRQAYSGIFHMLPLGLRVQDKLERLID 99

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +     GA ++S+ ++ S +LW  SGR    G E+ +  DR +   +  PTHEE +T + 
Sbjct: 100 KHMRSVGASKVSLSSISSQELWERSGRL-GEGSEVFKFHDRKESRFLLAPTHEEEITTLV 158

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T E +  +Y  + 
Sbjct: 159 GSLAKSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYTFDCTVEEALETYTSVK 218

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +Y R+F+ L +  +   A+SG +GG+LSHEF V +  GE  V      
Sbjct: 219 AAYTRLFNDLKIPYLVAAADSGNMGGNLSHEFHVPSSKGEDTVISCTSC 267



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 15/177 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFK-------GADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +   +E+GH F+ GT+YS  + A+          ++ +   +QMG +GIG  R++ AV +
Sbjct: 453 TQVAVELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQMGCHGIGVSRMITAVAD 512

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQ 387
           S  D KG+ WP +VAPF++ ++  K  ++      EKIY  L+       DV  DD  +Q
Sbjct: 513 SLADSKGLNWPRAVAPFEVIVVPAKGLEEE----AEKIYDTLTSDPASPVDVILDDRDKQ 568

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASHRFS 443
           +G +   ADL+G+P+ V+VG  +  +  +E++ R L  +RE++ LE++  +      
Sbjct: 569 MGWKLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVPLEQLSTFIRSLLE 625


>gi|320031958|gb|EFW13915.1| prolyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 668

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 120/227 (52%), Gaps = 1/227 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RSK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +   
Sbjct: 42  RSKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHME 101

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA ++ +  L S  LW  SGR      E+ R  DR +   +  PTHEE +T +     
Sbjct: 102 SLGASKLFLSALSSQLLWKLSGRL-HDDSEVFRFLDRKNAPFLLAPTHEEEITKLVGGLT 160

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+
Sbjct: 161 NSYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYV 220

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           R+F  L L  I   A+SG +GG+L+HEF +    GE  V        
Sbjct: 221 RLFDELKLPYIVAAADSGNMGGNLNHEFHLENSKGEDIVVSCSKCNY 267



 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 107/271 (39%), Gaps = 40/271 (14%)

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L +    +R    P   DL       + T E +         FP    + DF  + S + 
Sbjct: 423 LDIYDFRVRPYDRPPLNDLLD-----SKTAEKKKISFSSITKFPGTDHDLDFVRVQSGDR 477

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF----- 302
             +         +                     IE+GH F  GT+YS P+ AT      
Sbjct: 478 CSKCEDGVVTTHT--------------------TIEMGHTFLLGTRYSSPLQATVAIDPA 517

Query: 303 --KGADGKDH------YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               ADG          +QMG YGIG  R++AAV +   D +G+ WP ++APF   ++  
Sbjct: 518 KSVNADGAKESPKSVVPLQMGCYGIGVSRMIAAVADILADSRGLNWPRAMAPFSAIIVPG 577

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A  +  +   + I +       D   DD  + +  +   ADL G P+  +VG  +    
Sbjct: 578 LAFQEDSKKIYDHIASY-HNGSIDTILDDREQPLIRKLKDADLTGIPVICVVGKSWERHR 636

Query: 415 KVEIK-HRLTGIREDMSLEEVINYASHRFSN 444
            VE++  RL  +R D+SL+E+ ++ S     
Sbjct: 637 NVEVQCRRLNNLRTDVSLDELPSFISSLLDK 667


>gi|238498424|ref|XP_002380447.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220693721|gb|EED50066.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 627

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/229 (36%), Positives = 130/229 (56%), Gaps = 4/229 (1%)

Query: 2   RRSKYFLPI---LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P     ++N +  +   + L++R G + Q   GI+  LPLG +  D +  +I 
Sbjct: 40  RVSNFWIPTGGISKKNIQGEKEDVNDLLVRGGFLRQAYSGIFHMLPLGLRVQDKLERLID 99

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +     GA ++S+ ++ S +LW  SGR    G E+ +  DR +   +  PTHEE +T + 
Sbjct: 100 KHMRSVGASKVSLSSISSQELWERSGRL-GEGSEVFKFHDRKESRFLLAPTHEEEITTLV 158

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T E +  +Y  + 
Sbjct: 159 GSLAKSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYTFDCTVEEALETYTSVK 218

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +Y R+F+ L +  +   A+SG +GG+LSHEF V +  GE  V      
Sbjct: 219 AAYTRLFNDLKIPYLVAAADSGNMGGNLSHEFHVPSSKGEDTVISCTSC 267



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 15/177 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFK-------GADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +   IE+GH F+ GT+YS  + A+          ++ +   +QMG +GIG  R++ AV +
Sbjct: 453 TQVAIELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQMGCHGIGVSRMITAVAD 512

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQ 387
           S  D KG+ WP +VAPF++ ++  K  ++      EKIY  L+       DV  DD  +Q
Sbjct: 513 SLADSKGLNWPRAVAPFEVIVVPAKGLEEE----AEKIYDTLTSDPASPVDVILDDRDKQ 568

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASHRFS 443
           +G +   ADL+G+P+ V+VG  +  +  +E++ R L  +RE++ LE++  +      
Sbjct: 569 MGWKLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVPLEQLSTFIRSLLE 625


>gi|157111277|ref|XP_001651466.1| bifunctional aminoacyl-tRNA synthetase [Aedes aegypti]
 gi|108878460|gb|EAT42685.1| bifunctional aminoacyl-tRNA synthetase [Aedes aegypti]
          Length = 1702

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 139/426 (32%), Gaps = 74/426 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ +  MI  +   G Y            + A    E  R G  E   P  +  A L  
Sbjct: 1218 QVITKGEMIEYYDVSGCYILRHWSFAIWKAIKAWFDAEITRMGVKECYFPIFVSKAALER 1277

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    +    + +   PT E VM   +   I+SYR+LP    Q   
Sbjct: 1278 EKSHIADFAPEVAWVTKSGESDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNN 1337

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++       ++            +   L L    +  
Sbjct: 1338 VVRWEFKHPQPFLRTREFLWQEGHTAFGVKADAEQ----------EVLDILDL-YAKVYT 1386

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +   I                             +    T+ +     +          A
Sbjct: 1387 DLLAI---------------------------PVVKGRKTEKEKFAGGDYTTTVEAFISA 1419

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGS 316
                                S R I+     + G  +S      F+  + K+  YV   S
Sbjct: 1420 --------------------SGRAIQGATSHFLGQNFSKMFDIVFEHPETKEKEYVYQNS 1459

Query: 317  YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIY 369
            +GI   R +  +I    D +G++ P  VA  +  ++             +   ++C+++ 
Sbjct: 1460 WGIT-TRTIGVMIMVHADNQGLVLPPRVACIQAIIVPCGITANTTDDERKSLYESCKELE 1518

Query: 370  ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K G     D       G ++   +L G P+++ +G K + + +     R TG +  
Sbjct: 1519 AELVKAGVRCEGDYRDNYSPGWKYNHWELKGVPIRIELGFKDLKNKQFVAVRRDTGEKIT 1578

Query: 429  MSLEEV 434
            +  E+ 
Sbjct: 1579 VKREQA 1584


>gi|300120318|emb|CBK19872.2| unnamed protein product [Blastocystis hominis]
          Length = 414

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 150/448 (33%), Gaps = 55/448 (12%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD  +   KL     +   +S G   +L  G      +   ++    +    E++ 
Sbjct: 3   EAKERDHRVVGKKL--EMLLFDGNSPGNVFFLDRGLFTYSRLVEYLKSHYLQE-YEEIAS 59

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR--- 126
           P L  ++LW  SG YD Y   M ++   D  D+     P +      ++    +SYR   
Sbjct: 60  PLLFKSNLWKISGHYDHYRSNMFQVNTRDDKDEETFLKPMNCPSHCIVYAHKGRSYRSSL 119

Query: 127 -------NLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                  +LP  + +     R E     G + R   F   D + F    +      + + 
Sbjct: 120 WLAVTSSDLPIRYAEFTAIHRQENSGALGGLTRLNMFHQDDGHIF-CRKDQISQEISTLL 178

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +   ++ +LG     +   + P       +     +     +   K  +D+ +   +  
Sbjct: 179 STIKSLYSKLGFDFSFV-LSTQPSDSVGQSDEWKDTEAQLRSIL-EKLGLDYSVEEGDGA 236

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F        I                    DS+    +     ++V     FG K+    
Sbjct: 237 FYAPKIDVLIQ-------------------DSIRRYHQCGTIQLDVQLPKKFGLKF---- 273

Query: 299 SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               + ADG+ +  V +     G++     V     +G+  +     +P++I+L+ +   
Sbjct: 274 ----RNADGEFETPVLIHRAIYGSLERFLGVYIEHCNGRFPLC---FSPYQIALLPVS-- 324

Query: 358 DQVCRDACEKIYARLSKVGCD-VFWDDM--GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           D    + C ++  +L+    D +  D+   G  +G +     +  +   V VG + V   
Sbjct: 325 DPSHLEFCREVAEQLTNGNSDKLRVDERMMGRSLGKRIRECTMKHYNYMVTVGEEEVKSK 384

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            + ++ R +   + +S+           
Sbjct: 385 TLSVRSRGSKDIQHISVPSFRENLLAEL 412


>gi|255026350|ref|ZP_05298336.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 237

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E     + + +   + +     +D     ++         +  D+   ++ D  P+ 
Sbjct: 6   NVTENMRVFADNAVKDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDLSPDG 65

Query: 275 KRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG  R+++A+ E S
Sbjct: 66  QGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQS 125

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           +D  G +W   ++PF + LI +    +      E +Y  L   G  V  DD  E+ G +F
Sbjct: 126 NDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFSVLIDDRAERAGVKF 185

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           A ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 186 ADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 237


>gi|45185919|ref|NP_983635.1| ACR233Wp [Ashbya gossypii ATCC 10895]
 gi|44981709|gb|AAS51459.1| ACR233Wp [Ashbya gossypii ATCC 10895]
          Length = 562

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 2/205 (0%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H+L+   G I Q   G+  WLPLG + L NV  I+R+  +  G  E+ + TL    LW  
Sbjct: 33  HELLQGLGYIRQSQSGLVHWLPLGLRCLRNVENIVRKRMDECGGQELQLSTLSPETLWQR 92

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +GR+++  KE+ +L D   +      T EE +T +    ++SY++LP   YQI  K+RDE
Sbjct: 93  TGRWEN--KELFKLRDAKGRNYCLSATCEEDVTWLMSECLESYKDLPSLVYQIGTKYRDE 150

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           LRPR G++RSREFLMKDAYSF    + +   ++KM   Y +IF  L +      A+ G I
Sbjct: 151 LRPRGGLLRSREFLMKDAYSFHADSQDAMQMFHKMKQVYDQIFTDLKVPFKSAAADCGSI 210

Query: 203 GGDLSHEFIVLADTGETQVFCSKDF 227
           GG+LS E+  + + GE  ++     
Sbjct: 211 GGELSREYHYIHEKGEDVLYSCNSC 235



 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +    +   IEVGH FY G  YS  + A  +    +   ++MG YGIG  R+V A
Sbjct: 367 CGDCGKGTLDARNSIEVGHCFYLGRTYSEALGAAVRMRTNETTTLEMGCYGIGISRLVGA 426

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           + + + D +G+ WP  VAP+K+SL N    D+  R     + + LS    +      G  
Sbjct: 427 IADVTRDSQGLCWPSCVAPYKVSL-NYAGEDENVR----TVRSLLSLEPYESPA---GTS 478

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +G+   ++  LG PL VIVG K     ++E++ R 
Sbjct: 479 LGASLQLSQQLGIPLSVIVGKKSWPHVEIEVRGRR 513


>gi|85076319|ref|XP_955907.1| hypothetical protein NCU04449 [Neurospora crassa OR74A]
 gi|28916937|gb|EAA26671.1| hypothetical protein NCU04449 [Neurospora crassa OR74A]
 gi|40882172|emb|CAF05998.1| probable proline-tRNA ligase [Neurospora crassa]
          Length = 558

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 143/439 (32%), Gaps = 75/439 (17%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADL 79
            +++L+  +I  ++   G +   P      + +    +E  +  G  E + P   S   L
Sbjct: 62  QEVVLKAELIEYYTEISGFFIMRPATMYIWNVIRKWFQEHIDELGVEETNFPMFLSQKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDI---FRSHIKSYRNLPFTF 132
             E    + +  E+  +    DK     +   PT E VM      +   I+S+R+LPF  
Sbjct: 122 EKEKEHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPWKPDYAKWIRSHRDLPFRL 181

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
            Q     R E +     +R+REF+ ++ ++  LT + +     ++   Y  ++ +  L +
Sbjct: 182 NQWNSVVRWEAKQTTPFLRAREFMWQEGHTAHLTEQAAGEEVLQILEFYAGVYEQ--LLA 239

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           +P+                V     E + F    +         ++   I    S     
Sbjct: 240 VPV----------------VRGRKTEAEKFAGGYYTTTVEGYIPSNGRGIQGATSHCLGQ 283

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                    V +                     H++                        
Sbjct: 284 NFSKMFDITVEDPAEKGKHI-------------HVWQ----------------------- 307

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDAC 365
              S+G+ + RV+  ++    D KG++ P  +A  +  LI +                  
Sbjct: 308 --NSWGL-STRVIGVMVMIHGDDKGLVLPPRIAKIQSILIPVGLTAKMSAEEKDAHMKKV 364

Query: 366 EKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +++ A L K G     D   G     +F   +L G PL++  G K  +   V    R TG
Sbjct: 365 DELLATLKKAGVRADVDTREGYTPAWKFNDWELKGVPLRIEFGPKDAAKDVVSYARRDTG 424

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + + E+         
Sbjct: 425 EKGTIPIAELTTKVPELLE 443


>gi|327293177|ref|XP_003231285.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466401|gb|EGD91854.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 526

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 141/435 (32%), Gaps = 58/435 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            D         L T  I  +S G   + P G   L+ +   +R +  + G  E+  P + 
Sbjct: 59  ADHRALGTAQDLFTNSI--YSPGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPNIY 116

Query: 76  SADLWVESGRYDSYGKEMLRL----------ADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              LW  SG + +Y  +M  +              ++     P +      +F+S   SY
Sbjct: 117 KQSLWEVSGHWQNYKDDMYEVGGRGDTGDTGETSENEIYGLKPMNCPGHCLLFKSQKHSY 176

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  +       R+E+     G+ R R F   D + F   P                +
Sbjct: 177 RELPVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIF-CRPGQIGSEIQLALKFADTV 235

Query: 185 FHRLGLKS-IPMRAESGPIGG-DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               GL     +   + P      S E    A+    Q   +          +       
Sbjct: 236 LQTFGLADGYRLVLSTRPEKDFIGSLEQWENAEQQLRQALDNSGLSWELNEGDG------ 289

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      + ++ DS  +  ++S   +++     F   Y +P  +  
Sbjct: 290 --------------AFYGPKIDLQIQDSQGKYHQLSTIQLDMNLPQRFELDYLVPEGSEE 335

Query: 303 KGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
                 G+   V +     G++    A++   ++G+   WP  ++P +  L+ I    +Q
Sbjct: 336 YDPATGGRATPVLIHRAIFGSLERFFALLIERYNGQ---WPFWLSPRQAILLTIGKGLEQ 392

Query: 360 VCRDACEKI-------YARLSKVG---------CDVFWDDMGEQIGSQFAVADLLGFPLQ 403
              DA  KI        +R S  G          +V  D     +  +   A    + L 
Sbjct: 393 TAEDAVAKISGFEPITSSRPSSTGLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYNLV 452

Query: 404 VIVGSKFVSDSKVEI 418
            I+G K V+D  V+I
Sbjct: 453 FIMGPKNVADGSVDI 467


>gi|50309671|ref|XP_454847.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643982|emb|CAG99934.1| KLLA0E19801p [Kluyveromyces lactis]
          Length = 549

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 83/209 (39%), Positives = 127/209 (60%), Gaps = 2/209 (0%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           ++ +H+L+ + G + Q S G+  WLPLG K L N+  IIR   + +GA E+S+ +L    
Sbjct: 19  QLPTHELLQQLGYVKQASSGVLHWLPLGLKTLRNIEGIIRRRMDESGAHEVSLSSLSQRS 78

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  +GR+ +   E+ +L D   K     PT EE +T +  S++ SY++LP   YQI  K
Sbjct: 79  LWETTGRWSNT--ELFKLKDAKKKDYCLVPTCEEEITWLMNSYLTSYKDLPIIAYQITRK 136

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDELRPR G++R REFLMKDAYSF L  E +  ++ ++  +Y +IF  +G+  +   A+
Sbjct: 137 YRDELRPRGGLLRGREFLMKDAYSFHLNSEDAVSTFERVNATYDKIFTDIGVPFVSAVAD 196

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           SG IGGDLS E+  + ++GE  +F     
Sbjct: 197 SGDIGGDLSKEYHFIHESGEDTLFRCNSC 225



 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 20/159 (12%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E +  SA+ IEVGH FY G KYS  ++ATF+  D  D  ++MG YGIG  R++ A
Sbjct: 356 CAQCEEGELESAKSIEVGHTFYLGKKYSKALNATFRQQDNSDVVMEMGCYGIGVSRLIGA 415

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD----- 382
           + + + D KG+ WP SV+P+K+S+            A +K   +L+K       D     
Sbjct: 416 IAQVTRDPKGLRWPSSVSPYKVSVC-----------ASDKSVDQLNK--VKALLDYKPYT 462

Query: 383 --DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             D    IG++   +  LG P+ ++VG K   + ++E++
Sbjct: 463 DFDAKTSIGAKIQQSHALGIPIAIVVGPKSWPNVEIEVR 501


>gi|203284314|ref|YP_002222054.1| prolyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|201083757|gb|ACH93348.1| prolyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 491

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 160/456 (35%), Gaps = 87/456 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L I+Q+    A++  +  +          KG    +P G    + + ++I ++  
Sbjct: 15  FSKWYLDIVQK----AKLVDYSPV----------KGCMVIMPYGYAIWERIQSVIDDKFK 60

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            +G      P L   +    E      +  E+  +     +   + ++  PT E ++ ++
Sbjct: 61  ESGHENAYFPLLIPYEFLEREKEHVKGFSPELAVVTTAGGEELREPLVLRPTSETIIWNM 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   IKSYR+LP    Q     R E        R++ FL    + +              
Sbjct: 121 YSKWIKSYRDLPIKINQWANIIRWEK-------RTKPFLRTTEFLWQE------------ 161

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G  +HE    A   E  +F    +  F       
Sbjct: 162 --------------------------GHTAHETSNEAQ--EEALFILNLYKKFV-----E 188

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D+  I        +      A S    E L            + ++ G   Y G  ++  
Sbjct: 189 DYLAIPVFYGKKTEREKFAGAVSTYTIEAL--------MQDKKALQAGTSHYLGLNFAKA 240

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  +G+  YV   S+G+ + R++ A+I    D KG+I P  +AP +I ++ I   
Sbjct: 241 FDVKFQNKNGEMSYVFATSWGV-STRLIGALIMVHSDSKGLILPPKIAPIEILIVPIFKK 299

Query: 358 DQ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           D        +    I+  L K    V  D D     G +FA ++  G P+++ +GS  + 
Sbjct: 300 DDDVNKKILEYATTIFDILVKEKFRVEIDKDFKNSPGFRFAASEFKGIPIRIEIGSNDIL 359

Query: 413 DSKVEI--KHRLTGIREDMSLEEVINYASHRFSNNR 446
              V +  + R    +  +S +E++          +
Sbjct: 360 MDCVTVARRDRDKNSKYQVSFKELLPKIKEELETMQ 395


>gi|150866378|ref|XP_001385956.2| proline-tRNA ligase [Scheffersomyces stipitis CBS 6054]
 gi|149387634|gb|ABN67927.2| proline-tRNA ligase [Scheffersomyces stipitis CBS 6054]
          Length = 682

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 135/440 (30%), Gaps = 70/440 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           +++ +  M+  +   G Y   P      + +         + G      P   S   L  
Sbjct: 195 QVVTKGEMLDYYDVSGCYILRPNSYAVWETIQDWFNVHIKKMGVQNSYFPMFVSQRVLEK 254

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        D+ +   PT E VM   +   I+S+R+LP    Q   
Sbjct: 255 EKDHIEGFAPEVAWVTRAGNSELDEHIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNS 314

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++  LT E +    +++   Y RI+    L ++P+  
Sbjct: 315 VVRWEFKHPQPFLRTREFLWQEGHTAHLTKEEAAKEVDEILDLYARIYEE--LLAVPV-- 370

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                         V     E + F   D+              I    S          
Sbjct: 371 --------------VKGKKTENEKFAGGDYTTTVEGFIAATGRGIQGATSHHLGTNFSKM 416

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
               V N    D          R     + +   T+    M  T     G          
Sbjct: 417 FNISVENPDGADK--------PRVFAFQNSWGLSTRVIGVMVMTHSDNKG---------- 458

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQ---VCRDACEKIYA 370
                               ++ P  VA  +  +I +    K  D+      D    I A
Sbjct: 459 --------------------LVLPPRVAQTQAVVIPVGLTSKTTDEQRKAINDGAADIEA 498

Query: 371 RLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           RL  V      D       G +FA  +L G PL++  G K +S  +  +  R  G +  +
Sbjct: 499 RLKAVDVRAIGDYRDIYTPGWKFAEWELKGVPLRIEFGPKDLSSEQATVVRRDNGAKYTV 558

Query: 430 SLEEVINYASHRFSNNRPVL 449
            L E+           +  L
Sbjct: 559 KLAELETRIPEILEEMQKGL 578


>gi|257075630|ref|ZP_05569991.1| prolyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 470

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 160/410 (39%), Gaps = 67/410 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGK 91
             + KG+  WLP G K + ++++++RE  +  G  E+S P L S + L VE      +  
Sbjct: 32  RYNIKGMNVWLPYGLKIIHSIDSLLREYSDDGGIEEVSFPVLISREQLEVEFEHVKGFEN 91

Query: 92  EMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +        D  +   PT E  M  +F   I+S+ +LPF  YQI   +R E +   
Sbjct: 92  EIYWVTKGGTTPLDIDLALRPTSEAAMYTMFPLWIRSHSDLPFRIYQIVNVYRYETKH-- 149

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
               +R F+                                             I    +
Sbjct: 150 ----TRSFIRV-----------------------------------------REIHFYEA 164

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H   V  +  E Q+      M+      + D     S++   +    P A  S   +   
Sbjct: 165 HTAHVDFEDAEKQMDEYLKIMER----LSDDLCIYFSMDIRPDWDKFPGAMYSVAFDTP- 219

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                       R +++G I  +G  ++      +   +G   YV   ++G+ + R++AA
Sbjct: 220 --------MPGYRSLQIGTIHEYGENFAKNYGIKYLDENGDMKYVSQTTFGL-SERLMAA 270

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGE 386
           VI    D KG++ P  +AP ++ ++ I + +     +    I ++L ++G     D+   
Sbjct: 271 VIGIHGDDKGLVLPYKLAPVQVIIVPIPSDNYDEIIEYSNGIKSKLMEIGIRCQIDNSDY 330

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G +F   ++ G P+++ +G + V+D  + I  R    +  + LEE+ N
Sbjct: 331 TPGYKFNEWEMRGVPVRIEIGKREVNDKTLTISLRTRKKKIKIELEEISN 380


>gi|260949659|ref|XP_002619126.1| hypothetical protein CLUG_00285 [Clavispora lusitaniae ATCC 42720]
 gi|238846698|gb|EEQ36162.1| hypothetical protein CLUG_00285 [Clavispora lusitaniae ATCC 42720]
          Length = 565

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 2/222 (0%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
            I +H+L+ R   +     G+  W+P+G   L+ +  ++ +     GA E+S+  L  +D
Sbjct: 30  RIPTHELLARLQYVSPPKPGLVHWMPMGMLVLNKMKQLVHKHMQDAGAEEISLSALSHSD 89

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW ++GR+     E+ RL D         PT EE +T + + ++ SY+NLP  FYQI  K
Sbjct: 90  LWKQTGRWGGA--ELFRLKDSKGAEYCLAPTCEEEVTHLVQQNVASYKNLPLLFYQINTK 147

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FRDE RPR G++R REF+MKDAYSFD++   +  +Y  M  +Y  +F  L    +   A+
Sbjct: 148 FRDEKRPRSGLLRGREFVMKDAYSFDVSEAEAMRAYETMSRAYAGVFAALRAPCVRADAD 207

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +G IGG +SHE+  +   GE  +F   D            F 
Sbjct: 208 TGEIGGSMSHEWHYVHAAGEDTLFECTDCGRTSNVEMTPSFP 249



 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 18/179 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--GADGK--DHYVQMGSYGIGAMR 323
                     S+R IEV H FY G +Y+  +  T +  GADG      V MG YGIG  R
Sbjct: 369 CAHCDSGTLRSSRAIEVAHTFYLGDRYTRALDCTVEVPGADGTVSRQPVLMGCYGIGISR 428

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++AA+ E + D  G+ WP ++AP+ ++++     D   ++   ++   L  +  +V  D 
Sbjct: 429 IIAALAEINRDSHGLRWPAAIAPWHVTVV-----DAGAQEQAHEVARSLGDM--EVRLDA 481

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-----IREDMSLEEVIN 436
               ++G +   +  +G PL ++VG ++    ++E++ R  G     +R++ S + ++ 
Sbjct: 482 RPSVRLGRKIRESHAMGIPLVLVVGKRY-PTVEIEVRGRQHGRSWETVRQESSFDWIVE 539


>gi|171688027|ref|XP_001908954.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943975|emb|CAP69627.1| unnamed protein product [Podospora anserina S mat+]
          Length = 577

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 2/234 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII-REE 60
           R S+ + P  ++ P       H  ++R G +     GI+  LPLG++    +  ++ R  
Sbjct: 8   RLSRVWFPT-KKRPASGVENGHAKLIRAGFLRPSHAGIFHMLPLGRRVQTKLEELVARHM 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           ++   A  +S+  + S  LW +SGR ++   E+ + +DR +   +  PTHEE +T +   
Sbjct: 67  EHMLAASRVSLSAVSSQSLWDKSGRLENTASELFKFSDRKNVGYLLAPTHEEEITALVAQ 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             K+ ++LP   +QI  K+RDE RPR G++R REF+MKD Y+FD + E +  +Y+ + + 
Sbjct: 127 TAKTAKDLPLRLFQITPKYRDEFRPRHGLLRGREFVMKDLYTFDSSKESALETYDNVRLV 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y +IF  + L  +  +A SG +GG+LSHE+ +    GE  V             
Sbjct: 187 YSQIFEEMKLPVLAAKASSGNMGGNLSHEYHLPTPLGEDHVISCDSCNYVANEE 240



 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 106/234 (45%), Gaps = 14/234 (5%)

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---K 275
           ++            P   T  + +    S+            ++   +  D  P      
Sbjct: 343 SESLVGTKPTIPSWPKNLTPRNQVPVSVSVQNTNQWNKDRPLNLIRIQTGDKCPSCASGH 402

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSAT--FKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
             + + +E+GH FY GT+YS  + AT      + K   +QMG YGIG  R++ AV E   
Sbjct: 403 LKAEKAMELGHTFYLGTRYSEALGATILVPNDERKAVPMQMGCYGIGISRILGAVAELLM 462

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG------CDVFWDDMGEQ 387
           D KG+ WP ++AP+   ++     D+       ++Y +++++G       DV  DD  + 
Sbjct: 463 DEKGLNWPVAIAPYSCVIVMGAGVDEQD---AVEVYRQINQIGRVQAKYLDVVLDDRQKT 519

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  +   ADL GFP+ V +G ++++  ++E++ R  G+++ + + E+    +  
Sbjct: 520 LPWKLMDADLAGFPIIVTLGREWLAAKRLEVQCRRLGVKQAVGITELPQIIAKL 573


>gi|32477337|ref|NP_870331.1| threonyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|32447888|emb|CAD77406.1| threonyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 830

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 111/354 (31%), Gaps = 44/354 (12%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMK 158
           N +  +  P +      IF +  +SYR LP   ++    +R E      G+MR R     
Sbjct: 492 NHERYLLKPMNCPHHCQIFGAQPRSYRQLPLRLFEFGTVYRHEQTGELNGMMRVRGLTQD 551

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---LSHEFIVLAD 215
           DA+ F  T +  +  +         +   +GL    ++             S E    A+
Sbjct: 552 DAHIF-CTADQVEEEFRATIELTKFVLESVGLDDYRVQLSLRDPDSSKYVGSEENWDHAE 610

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                V           P E   +                              +    +
Sbjct: 611 GALRGVLEQSGLSFNEEPGEAAFYGPK---------------------------ADFMVR 643

Query: 276 RVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESS 332
               R  ++G +      Y+LP      +KG D   H  V +     G++     ++   
Sbjct: 644 DCIGRSWQLGTV---QLDYNLPERFKLEYKGNDNATHRPVMIHRAPFGSLERFTGMLIEH 700

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             G   +W   ++P +I ++ +        +    +  +L + G  V  D    ++ ++ 
Sbjct: 701 FAGAFPMW---LSPEQIRVLPLSDKS---VEYATAVAKQLDEAGFKVTVDASDGKVQAKI 754

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             A +       +VG K     +V ++ R+ G    M ++E I          +
Sbjct: 755 RNAQIDLVNYMAVVGPKEAESGQVALRDRIEGDLGSMPIKEAIARLQKEVETRQ 808


>gi|71024203|ref|XP_762331.1| hypothetical protein UM06184.1 [Ustilago maydis 521]
 gi|46101855|gb|EAK87088.1| hypothetical protein UM06184.1 [Ustilago maydis 521]
          Length = 735

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 128/254 (50%), Gaps = 14/254 (5%)

Query: 2   RRSKYFLPILQENP-----------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKAL 50
           R S +F P  + +             D  + S +L++R G +   S GI++ LP   + +
Sbjct: 46  RLSTHFSPTQKASQSSSPSCVSSACNDDPLPSLQLLVRGGYVRSSSSGIFTLLPNALRIV 105

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +  II E+     A  +++P L  + LW ++GRY   G E+ +L DR +   + GPTH
Sbjct: 106 GKITNIIDEQLCAIHASRIAMPNLLPSKLWHQTGRYTVMGSELYKLRDRKNSEFVLGPTH 165

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           EE +T +  + + S R LP   YQI  KFRDE RPR G++R++EFLMKD YSFD +   +
Sbjct: 166 EEEITKLVANQVDSDRQLPLRLYQITTKFRDEPRPRMGLLRTKEFLMKDLYSFDKSAADA 225

Query: 171 KHSYNKMFVSYLRIFHR-LGLKSIP--MRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +Y ++  +Y RIF R  G+        A++G IGG+ SHE+ V    GE  +      
Sbjct: 226 NTTYEEVRAAYARIFDRIFGVDGRWTAAEADTGAIGGNKSHEYHVKDPAGEDTLISCSRC 285

Query: 228 MDFPIPSENTDFDD 241
                  +     D
Sbjct: 286 AYTANTEKAVSMPD 299



 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 73/220 (33%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-------------GKDHYVQMGSYGI 319
            +    ++ IEVGH FY G +YS  + A F  +                    QMG YGI
Sbjct: 496 PHSLQESKAIEVGHTFYLGERYSRTLEAGFLPSHDVAEQVSQVHKLANGRVPFQMGCYGI 555

Query: 320 GAMRVVAAVIES---------SHDG------------KGIIWPDSVAPFKISLINIKAHD 358
           G  R++ A+ +            D              G +WP  +APF   ++     D
Sbjct: 556 GVSRILGALAQKAVGDFDRIFHGDAGDSAVASKKRQKAGFVWPSLIAPFTAVIVISDVKD 615

Query: 359 QVCRDACEKIYARL---------------------------------SKVGC------DV 379
               +A + ++ R+                                    G       ++
Sbjct: 616 PAKVEAAQIVWDRIVSHARRSDRTIRAVLERISSQRSQPDQATPQVDQDQGWSREEASEI 675

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             DD    +GS+ A +DL G+  ++IVG  F + +K+E++
Sbjct: 676 VIDDRTSTLGSKLADSDLTGYAYRIIVGKHFTAQAKLELQ 715


>gi|254565877|ref|XP_002490049.1| Protein of unknown function that may interact with ribosomes, based
           on co-purification experiments [Pichia pastoris GS115]
 gi|238029845|emb|CAY67768.1| Protein of unknown function that may interact with ribosomes, based
           on co-purification experiments [Pichia pastoris GS115]
 gi|328350453|emb|CCA36853.1| prolyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 677

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 138/439 (31%), Gaps = 70/439 (15%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G Y   P      + +     ++  R G      P   S+  L 
Sbjct: 189 QQILTKGEMMDYYDVSGCYILRPASYAIWERIQEYFDKKIKRLGVQNAYFPMFVSSKVLE 248

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 249 KEKDHIEGFAPEVAWVTRAGSSELEEPIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 308

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++   Y+ I+    L ++P+ 
Sbjct: 309 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTFEEANKEVLQILDYYVGIYEE--LLAVPV- 365

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F    F         T    I    S         
Sbjct: 366 ---------------VKGKKTENEKFAGGLFTTTCEGYIPTTGRGIQGATSHCLGQNFSK 410

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                V N    D                + +   T+    M        G         
Sbjct: 411 MFNISVENPDGADKPKLFAWQ--------NSWGLSTRVIGVMVMVHSDNKG--------- 453

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIY 369
                                ++ P  V+ +++ +I +       K  +Q     C KI 
Sbjct: 454 ---------------------LVIPPRVSQYQVIVIPVGITSKTTKEEEQKILATCNKIE 492

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L +    V  D       G +F+ A+L G PL++ VG + +  + V    R    +  
Sbjct: 493 GKLRQNDLRVTSDYRTNYSPGWKFSNAELKGIPLRIEVGPRDLQKNTVVAVRRDDFTKTT 552

Query: 429 MSLEEVINYASHRFSNNRP 447
           +SL+      S      + 
Sbjct: 553 ISLDTFEKEISDLLETMQA 571


>gi|203287850|ref|YP_002222865.1| prolyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|201085070|gb|ACH94644.1| prolyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 491

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 160/456 (35%), Gaps = 87/456 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L I+Q+    A++  +  +          KG    +P G    + + ++I ++  
Sbjct: 15  FSKWYLDIVQK----AKLVDYSPV----------KGCMVIMPYGYAIWERIQSVIDDKFK 60

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            +G      P L   +    E      +  E+  +     +   + ++  PT E ++ ++
Sbjct: 61  ESGHENAYFPLLIPYEFLEREKEHVKGFSPELAVVTTAGGEELREPLVLRPTSETIIWNM 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   IKSYR+LP    Q     R E        R++ FL    + +              
Sbjct: 121 YSKWIKSYRDLPIKINQWANIIRWEK-------RTKPFLRTTEFLWQE------------ 161

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                     G  +HE    A   E  +F    +  F       
Sbjct: 162 --------------------------GHTAHETSNEAQ--EEALFILNLYKKFV-----E 188

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D+  I        +      A S    E L            + ++ G   Y G  ++  
Sbjct: 189 DYLAIPVFYGKKTEREKFAGAVSTYTIEAL--------MQDKKALQAGTSHYLGLNFAKA 240

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  +G+  YV   S+G+ + R++ A+I    D KG+I P  +AP +I ++ I   
Sbjct: 241 FDVKFQNKNGEMSYVFATSWGV-STRLIGALIMVHSDSKGLILPPKIAPIEILIVPILKK 299

Query: 358 DQ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           D        +    I+  L K    V  D D     G +FA ++  G P+++ +GS  + 
Sbjct: 300 DDDVNKKILEYATTIFDILVKEKFRVEIDKDFKNSPGFRFAASEFKGIPIRIEIGSNDIL 359

Query: 413 DSKVEI--KHRLTGIREDMSLEEVINYASHRFSNNR 446
              V +  + R    +  +S +E++          +
Sbjct: 360 MDCVTVARRDRDKNSKYQVSFKELLPKIKEELETMQ 395


>gi|163846883|ref|YP_001634927.1| prolyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222524704|ref|YP_002569175.1| prolyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|259511578|sp|A9W9Q2|SYP_CHLAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511583|sp|B9LC55|SYP_CHLSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163668172|gb|ABY34538.1| prolyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222448583|gb|ACM52849.1| prolyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 480

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 147/457 (32%), Gaps = 86/457 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +++L I++E    AE+A            +  +G       G    + +   + +    T
Sbjct: 15  QWYLDIVREA-DLAEVA------------EVVRGCIVVKAHGWAIWELMQRALDDRIKAT 61

Query: 65  GAIEMSVPTLQSADL-WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFR 119
           G   +  P L        E+   + +  E+  +     +   +  I  PT E ++   + 
Sbjct: 62  GHANVQFPLLIPKSFIMKEAEHVEGFAPEVAEVTRAGGEELAEPYIIRPTSETIIGYFYS 121

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+SYR+LP  + Q     R E       MR+R FL   A  +      +  +  +   
Sbjct: 122 KWIRSYRDLPLLYNQWANVMRWE-------MRTRPFLRT-AEFWWQEGHTAHATEAEAEE 173

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             LRI H +    +        I G             E + F                 
Sbjct: 174 ETLRILHDVYADFVEKEMAVPVIRGL----------KTEKEKFPGALRS----------- 212

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                            E      R ++ G     G  ++    
Sbjct: 213 ------------------------------YCIEAMMQDGRALQAGTSHNLGQNFARAFD 242

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            TF   +    Y    S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I  +D+
Sbjct: 243 ITFTDQNNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLVLPPRLAPIQVVVVPIYKNDE 301

Query: 360 V---CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  A E++ A           DD      G +F   +L G P+++ VG K V+   
Sbjct: 302 ERSLVMAAVEQMTAAWKG-RLRFKVDDRDNYSPGYKFNEWELKGVPVRIEVGPKDVAKET 360

Query: 416 VEIKHRL---TGIREDMSLEEVINYASHRFSNNRPVL 449
           V +  R       +  +    +        +  +  L
Sbjct: 361 VALARRDIPGKAGKSFVPQAGLTERIEALLNEMQTAL 397


>gi|171910276|ref|ZP_02925746.1| prolyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 510

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 143/442 (32%), Gaps = 91/442 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    + +   +  +   TG      P L   + L  E+   + +  E   +
Sbjct: 36  GCMVIKPWGYGIWELIQKHLDAKFKETGHQNAYFPLLIPLSYLEKEAQHAEGFATECAVV 95

Query: 97  ADRN-------------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                  ++  +  PT E ++   F   ++SYR+LP    Q   
Sbjct: 96  THHRLEAVKQPDGTVKMEPTGKLEEPFVIRPTSETIIGAAFARWVESYRDLPLLINQWAN 155

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+RPR   +R+ EFL ++ ++   T E +      M      ++       + + A
Sbjct: 156 VMRWEMRPRL-FLRTAEFLWQEGHTAHETSEEAMKEAKLMH----GVYEDFLRNYLAIPA 210

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             G              +  E + F       F + +   D                   
Sbjct: 211 IPG--------------EKTERERFPGALNT-FTVEAMVQD------------------- 236

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                 + I+ G   + G  ++   +  F G D   H+    S+
Sbjct: 237 ---------------------RKAIQAGTSHFLGQNFAKAANIEFLGRDNLRHHAWTTSW 275

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSK 374
           G+ + R++  ++ +  D  G + P  +AP +I ++ +           DACE +   L  
Sbjct: 276 GV-STRLIGTLLMAHADDDGAVLPPRIAPTQIVILPVTPKPDTKDAVIDACEALATTLRA 334

Query: 375 VGC-----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IRE 427
                    V  D      G++       G PL+V +G + ++   V +  R  G   +E
Sbjct: 335 HAFHGEPLRVHVDKRDIAGGARNWEWIKKGVPLRVEIGPRDITSRSVAVARRDRGPKEKE 394

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
            +  E+ I       ++ +  L
Sbjct: 395 FIPKEQFIQDVGDILADIQKQL 416


>gi|20094665|ref|NP_614512.1| prolyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|74580679|sp|Q8TW09|SYP_METKA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19887826|gb|AAM02442.1| Prolyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 485

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 153/450 (34%), Gaps = 82/450 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  +L    R AEI           +    KG+Y WLP G +    V   +R +  
Sbjct: 21  FSEWYAEVL----RSAEIMD---------VRYPVKGMYVWLPYGFEIRQRVVEKLRRKLR 67

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG  E+  PTL     L  ES     +  E+  +        D+ +   PT E  +  +
Sbjct: 68  ETGHEEVLFPTLIPETQLKKESEHIAGFEDEVYWVTHGGLKELDEKLALRPTSETAIYPM 127

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNK 176
           F   I+S+ +LP   +QI   FR E +    ++R RE    K+A++   T E ++    +
Sbjct: 128 FALWIRSHADLPLKIFQIVNTFRYETKHTRPLIRMREITTFKEAHTAHATEEEAEEQVKE 187

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y   F  LG+  I   A   P                       K        + +
Sbjct: 188 AVEIYSSFFDELGIPYI---ASVRPE--------------------WDKFPGAEYTVAFD 224

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T   D  +L            A +     +  +   E   ++  GI          +   
Sbjct: 225 TLMPDGRTLQIGTVHMLGQNFARTFEVTYETEEGDQEYVYMTCYGI--------SDRVVA 276

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
            M A      G                              ++ P  VAP+++ ++ I  
Sbjct: 277 SMIAIHGDERG------------------------------LVLPPDVAPYQVVMVPILK 306

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K   +   +   ++   L + G  V  DD     G +F   +L G PL++ +G++ + + 
Sbjct: 307 KGVRRKILERAAEVEEMLREEGVRVKVDDRDMSPGRKFHYWELKGVPLRIELGARELEEG 366

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +  R    RE  + EE+ +       +
Sbjct: 367 TAVVFRRDELERETYAFEELPDVVPELLED 396


>gi|255940600|ref|XP_002561069.1| Pc16g07440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585692|emb|CAP93414.1| Pc16g07440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 630

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 4/236 (1%)

Query: 2   RRSKYFLPI--LQENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S  ++P   + + P D E    + L++R G + Q   G++  LPLG +  D +  +I 
Sbjct: 35  RVSNIWIPTGGISKKPVDGEKEDANDLLVRAGFLRQAYSGVFHLLPLGLRVQDKLEHLID 94

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +  +  GA ++S+ ++ S +LW +SGR  + G E+ R  DR     +  PTHEE +T + 
Sbjct: 95  KHMSSLGASKVSLSSISSQELWKQSGRL-TDGSELFRFNDRKGTPFLLAPTHEEEITTLV 153

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                SY++LP   YQI  K+RDE RPR G++R REF+MKD Y+FD + + +  +Y+ + 
Sbjct: 154 GHLTTSYKSLPLRVYQISRKYRDEARPRQGLLRGREFIMKDLYTFDYSVDEALKTYDAVK 213

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +Y  +F+ L +  +   A+SG +GG LSHE+  ++  GE +V             
Sbjct: 214 SAYTELFNELKIPYLVAAADSGNMGGSLSHEYHFISPKGEDEVVSCSHCDHVYNEE 269



 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 23/201 (11%)

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----------------GAD 306
           H+             S   +E+GH F+ GT+YS  ++A+                   A 
Sbjct: 433 HDGDRCSQCAHGSLTSHSAVELGHTFHLGTRYSKVLNASVSVNSALLEGSSELDAKSSAK 492

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            +   +QMG +GIG  R+++AV     D KG+ WP ++AP+++ +++ K          +
Sbjct: 493 EQIVPMQMGCHGIGVSRMISAVANRLADSKGLNWPRAMAPYEVVVVSGKG----LETVAD 548

Query: 367 KIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ++Y  L+       DV  DD  + +G +   ADL+G+P+ V+VG+ +     +E++ R  
Sbjct: 549 QVYDSLTGGAAASLDVILDDRDKGMGWKLGDADLIGYPIIVVVGNGWKKKETLEVQCRRL 608

Query: 424 GIREDMSLEEVINYASHRFSN 444
            ++ED+SL+ +  +     + 
Sbjct: 609 DVKEDVSLDGLRTFVESLLAK 629


>gi|323448551|gb|EGB04448.1| hypothetical protein AURANDRAFT_32534 [Aureococcus anophagefferens]
          Length = 579

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 134/424 (31%), Gaps = 80/424 (18%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNA----IIREEQNRTGAIEMSVP-T 73
           E+ +   M+  G I     G Y   P      + +       I++E           P  
Sbjct: 90  EVITKSEMIEYGKI----SGCYILRPWSFGIWEQIQKAFDGWIKDE--PLEVENCYFPLF 143

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           +    L  E    D +  E+  +    D    + +   PT E +M   F   ++S+R+LP
Sbjct: 144 VTKGALEAEEDHVDGFAPEVAWVTRSGDSELAEPIAIRPTSETIMYPEFAKWLRSHRDLP 203

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               Q     R E +     +RSREFL ++ ++       +             ++  LG
Sbjct: 204 LKLNQWCSVVRWEFKYPTPFLRSREFLWQEGHTAHYELAEADAM----------VYAILG 253

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +  +   +        ++     E + F                           
Sbjct: 254 L-YKKVYEDLLAVP-------VIPGTKTEKEKFAG------------------------- 280

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK- 308
                          E   D          R I+       G  +        + ADG  
Sbjct: 281 --------GLRTTTVEAYIDGSG-------RAIQGATSHNLGQNFGKIYGIEVESADGSG 325

Query: 309 -DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA--- 364
                   S+G+   R +  ++    D +G++ P  VAP ++ +I I +      +    
Sbjct: 326 GKRVPWQTSWGLT-TRSIGVMVMVHSDDQGLVLPPRVAPVQVVVIPIISKACPLAELQGF 384

Query: 365 CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            + + A L   G  V  DD   +  G ++   +  G PL+V VG +  +   V    R+ 
Sbjct: 385 VDSVKAELKAAGLRVRVDDRGNQSPGWKYNHWEQKGVPLRVEVGPRDAAAQSVMAVRRVD 444

Query: 424 GIRE 427
           G ++
Sbjct: 445 GGKK 448


>gi|303320217|ref|XP_003070108.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109794|gb|EER27963.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 668

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 119/227 (52%), Gaps = 1/227 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RSK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +   
Sbjct: 42  RSKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHME 101

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA ++ +  L S  LW  SGR      E+ R  DR     +  PTHEE +T +     
Sbjct: 102 SLGASKLFLSALSSQLLWKLSGRL-HDDSEVFRFLDRKYAPFLLAPTHEEEITKLVGGLT 160

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+
Sbjct: 161 NSYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYV 220

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           R+F  L L  I   A+SG +GG+L+HEF +    GE  V        
Sbjct: 221 RLFDELKLPYIVAAADSGNMGGNLNHEFHLENSKGEDIVVSCSKCNY 267



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 106/271 (39%), Gaps = 40/271 (14%)

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L +    +R    P   DL       + T E +         FP    + DF  + S + 
Sbjct: 423 LDIYDFRVRPYDRPPLNDLLD-----SKTAEKKKISFSSITKFPGTDHDLDFVRVQSGDR 477

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF----- 302
             +         +                     IE+GH F  GT+YS P+ AT      
Sbjct: 478 CSKCEDGVVTTHT--------------------TIEMGHTFLLGTRYSSPLQATVAIDPA 517

Query: 303 --KGADGKDH------YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               ADG          +QMG YGIG  R++AAV +   D +G+ WP ++APF   ++  
Sbjct: 518 KSVNADGAKESPKSVVPLQMGCYGIGVSRMIAAVADILADSRGLNWPRAMAPFSAIIVPG 577

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A  +  +   + I +       D   DD    +  +   ADL G P+  +VG  +    
Sbjct: 578 LAFQEDSKKIYDHIASY-HNGSIDTILDDRERPLIRKLKDADLTGIPVICVVGKSWERHR 636

Query: 415 KVEIK-HRLTGIREDMSLEEVINYASHRFSN 444
            VE++  RL  +R D+SL+E+ ++ S     
Sbjct: 637 NVEVQCRRLNNLRTDVSLDELPSFISSLLDK 667


>gi|159110155|ref|XP_001705339.1| Prolyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157433422|gb|EDO77665.1| Prolyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 542

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 141/429 (32%), Gaps = 76/429 (17%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGK 91
               KG   + P G    + +  +  EE  + G  ++  PT+     L  ES     +  
Sbjct: 65  RYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEA 124

Query: 92  EMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E   +        ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +   
Sbjct: 125 ECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTK 184

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            ++R RE                                                     
Sbjct: 185 PLIRVREIHWN------------------------------------------------- 195

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      T E  V    D+             D I  + +  +         D      
Sbjct: 196 -EAHCCHATAEDAVSQLSDYW---------KVIDTIFSDELCFKGQKLRRVCWDRFPGAD 245

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +  + +      R ++   I   G ++S      +     +  +  +   GI + RV+A 
Sbjct: 246 YSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLAC 304

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAH-------DQVCRDACEKIYARLS-KVGCDV 379
            +    D  G++ P  +AP  + +I I          DQ       +I   L  K+G  V
Sbjct: 305 ALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRV 364

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVIN 436
             DD   + +G +    +L G PL++ VG + +++ +  +  R  G   +  + + EV+ 
Sbjct: 365 SIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMK 424

Query: 437 YASHRFSNN 445
            +SH   N+
Sbjct: 425 VSSHTTENH 433


>gi|326479249|gb|EGE03259.1| prolyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 631

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 122/228 (53%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +++P          + S+ L++R G + Q   G++  LPLG +  + +  +I +  
Sbjct: 41  RASSFWIPSGGIAEAKNGVDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDKHM 100

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  A ++S+ +L S  LW +SGR      E+ R  DR     +  PTHEE +T +    
Sbjct: 101 RKLSAAKLSLSSLSSQALWKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVSGL 160

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  +Y
Sbjct: 161 IKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKEAY 220

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           + +F  L L  +   A SG +GG+LSHEF   +  GE  +        
Sbjct: 221 ISLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKGEDTIVSCSKCEY 268



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 127/307 (41%), Gaps = 19/307 (6%)

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSY---LRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +FL+ D  S  +  E ++HS   +  +Y   + I ++  L +     ++ P     +   
Sbjct: 327 KFLIADGQSEPVQREVNQHSLKSVASAYGIDIDIGYKDALATWKAEIQNQPQNTKQNIRV 386

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           + + D         +  +   +   +++  DI S        T                +
Sbjct: 387 LDIYDF--RVRVYDRPPIKDLLNGMSSNNLDIQSSLLDRFPGTNDGLDLLRARAGDECPN 444

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFK---------GADGK--DHYVQMGSYGI 319
                  + + IE+ H F+ GT+YS  + A               GK     +QMG +GI
Sbjct: 445 CGNPALKTDQSIELAHTFHLGTRYSEVLQANVSINPASLPGAEKKGKQEPVPIQMGCHGI 504

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++AV +   D KG+ WP ++APF++ ++      +   +    I  + ++   D 
Sbjct: 505 GVSRMISAVSDILADEKGLNWPQAIAPFQVVVVP-GKGLEKEGELVYDIVTQNTQQLIDT 563

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSLEEVINY 437
             DD  +    +   AD +G+P+ + VG     + +KVE++ R  G  R  +SLEEV  +
Sbjct: 564 ILDDRKKDFAWKLRDADTIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTQVSLEEVPEF 623

Query: 438 ASHRFSN 444
            S   SN
Sbjct: 624 VSSLLSN 630


>gi|194389892|dbj|BAG60462.1| unnamed protein product [Homo sapiens]
          Length = 476

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 129/435 (29%), Gaps = 75/435 (17%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  H   G Y   P      + +      E  + G      P   S   L  E      
Sbjct: 1   MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVAD 60

Query: 89  YGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +         + +   PT E VM   +   ++S+R+LP    Q     R E +
Sbjct: 61  FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK 120

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +R+REFL ++ +S   T          M  +   +   L L    +  E   I  
Sbjct: 121 HPQPFLRTREFLWQEGHSAFAT----------MEEAAEEVLQILDL-YAQVYEELLAI-- 167

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                                      +    T+ +     +          A       
Sbjct: 168 -------------------------PVVKGRKTEKEKFAGGDYTTTIEAFISA------- 195

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAM 322
                        S R I+ G   + G  +S      F+     G+  +    S+G+   
Sbjct: 196 -------------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT-T 241

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKV 375
           R +  +     D  G++ P  VA  ++ +I         +   +     C     RL  V
Sbjct: 242 RTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSV 301

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              V  D         +F   +L G P+++ VG + +   +     R TG +  ++  E 
Sbjct: 302 NIRVRADLRDNYSPDWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEA 361

Query: 435 INYASHRFSNNRPVL 449
                    + +  L
Sbjct: 362 ETKLQAILEDIQVTL 376


>gi|51102318|gb|AAT95872.1| prolyl-tRNA synthetase [Entamoeba moshkovskii]
          Length = 410

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 145/431 (33%), Gaps = 69/431 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           ++++++G+I  +   G Y   P      +N+   I     R G      P   S A L  
Sbjct: 2   QIVVQSGLIEYYDISGCYILRPPAYGIWENIQQFIDARIKRMGVENAYFPCFVSQATLKK 61

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E ++   F++ I  +R+LP    Q   
Sbjct: 62  EEDELNGFTPEVAWVTKSGQTDLQEPIALRPTSETIIYPAFKNWISGHRDLPMKVNQWCN 121

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E    +  +R+REF         L  EG                            
Sbjct: 122 VVRWEFSHPYPFIRTREF---------LWQEG------------------------HTAF 148

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            + P      HE + L                       + ++D++++  I  + +    
Sbjct: 149 SNQPEAEKECHEIMEL---------------------YASVYEDLLAVPVIRGKKSKGET 187

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                ++  +   +P N     R I+     + G  +S      F+    K       S+
Sbjct: 188 FPGAYYSLTVECIVPTNG----RSIQAATSHHLGQTFSKLFDIEFEDESNKKQLAWQNSW 243

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSK 374
           G+ + R +   + +  D KG++ P   A  ++ +I +      +        ++   L  
Sbjct: 244 GL-STRSIGVTVMTHGDNKGVVIPPRAAQKQVVIITLHHKGSPNDEMDTKAVELSQLLLD 302

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G   F D     + G +F+  ++ G P+++ +G +     KV I  R  G + + S + 
Sbjct: 303 NGIRAFADTNDMHKPGWKFSEYEMRGIPIRIELGPRDYDGKKVVIVRRDNGAKTESSWDN 362

Query: 434 VINYASHRFSN 444
           ++         
Sbjct: 363 LVETIKKTIDE 373


>gi|326474290|gb|EGD98299.1| prolyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 631

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 122/228 (53%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +++P          + S+ L++R G + Q   G++  LPLG +  + +  +I +  
Sbjct: 41  RASSFWIPSGGIAEAKNGVDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDKHM 100

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  A ++S+ +L S  LW +SGR      E+ R  DR     +  PTHEE +T +    
Sbjct: 101 RKLSAAKLSLSSLSSQALWKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVSGL 160

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  +Y
Sbjct: 161 IKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKEAY 220

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           + +F  L L  +   A SG +GG+LSHEF   +  GE  +        
Sbjct: 221 ISLFKELKLPYVVASASSGNMGGNLSHEFHSPSPKGEDTIVSCSKCEY 268



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 125/306 (40%), Gaps = 17/306 (5%)

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFI 211
           +FL+ D  S  +  E ++HS   +  +Y  I   +G+K      +AE      +      
Sbjct: 327 KFLIADGQSEPVQREVNQHSLKSVASAY-GIDIDIGVKDALATWKAEIQNQPQNTKQNIR 385

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL           +  +   +   +++  DI S        T                + 
Sbjct: 386 VLDIYDFRVRVYDRPPIKDLLNGMSSNNLDIQSSLLDRFPGTNDGLDLLRARAGDECPNC 445

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFK---------GADGKDH--YVQMGSYGIG 320
                 + + IE+ H F+ GT+YS  + A               GK     +QMG +GIG
Sbjct: 446 GNPALKTDQSIELAHTFHLGTRYSEVLQANVSINPASLPGAEKKGKQELVPIQMGCHGIG 505

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+++AV +   D KG+ WP ++APF++ ++      +   +    I  + ++   D  
Sbjct: 506 VSRMISAVSDILADEKGLNWPQAIAPFQVVVVP-GKGLEKEGELVYDIVTQNTQQLIDTI 564

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSLEEVINYA 438
            DD  +    +   AD +G+P+ + VG     + +KVE++ R  G  R  +SLEEV  + 
Sbjct: 565 LDDRKKDFAWKLRDADTIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTQVSLEEVPEFV 624

Query: 439 SHRFSN 444
           S   SN
Sbjct: 625 SSLLSN 630


>gi|255918003|pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl-Adenylate
 gi|255918004|pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl-Adenylate
          Length = 518

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 141/429 (32%), Gaps = 76/429 (17%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGK 91
               KG   + P G    + +  +  EE  + G  ++  PT+     L  ES     +  
Sbjct: 41  RYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEA 100

Query: 92  EMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E   +        ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +   
Sbjct: 101 ECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTK 160

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            ++R RE                                                     
Sbjct: 161 PLIRVREIHWN------------------------------------------------- 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      T E  V    D+             D I  + +  +         D      
Sbjct: 172 -EAHCCHATAEDAVSQLSDYW---------KVIDTIFSDELCFKGQKLRRVCWDRFPGAD 221

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +  + +      R ++   I   G ++S      +     +  +  +   GI + RV+A 
Sbjct: 222 YSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLAC 280

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAH-------DQVCRDACEKIYARLS-KVGCDV 379
            +    D  G++ P  +AP  + +I I          DQ       +I   L  K+G  V
Sbjct: 281 ALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRV 340

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVIN 436
             DD   + +G +    +L G PL++ VG + +++ +  +  R  G   +  + + EV+ 
Sbjct: 341 SIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMK 400

Query: 437 YASHRFSNN 445
            +SH   N+
Sbjct: 401 VSSHTTENH 409


>gi|156053914|ref|XP_001592883.1| hypothetical protein SS1G_05805 [Sclerotinia sclerotiorum 1980]
 gi|154703585|gb|EDO03324.1| hypothetical protein SS1G_05805 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 536

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 146/442 (33%), Gaps = 71/442 (16%)

Query: 21  ASHK-LMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           A H+ L +   +     +S G   +LP G +    +   +  + +  G  E+  PT+   
Sbjct: 63  ADHRQLGIEQELFTTSPYSPGSPLFLPKGARMFKALTEFLSAQYSHFGFEEVITPTIYKK 122

Query: 78  DLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKSY 125
            LW +SG +++Y ++M  +  R             ++     P +      IF S  +SY
Sbjct: 123 SLWEKSGHWENYAEDMYSVIGRGASGETVEGQKGENEEYGLKPMNCPGHCLIFASKQRSY 182

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R +P  +       R+E+     G+ R R F   D + F   P   K   +K        
Sbjct: 183 REMPIRYTDFSPLHRNEISGALSGLTRVRRFHQDDGHIF-CRPSQIKEEISKTLEFVKMT 241

Query: 185 FHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +  LGL  +  +   + P   D         D  E  +  S                 + 
Sbjct: 242 YSTLGLGMNYRLVLSTRP--SDHYIGTKEEWDNAEKALKQS-----------------LD 282

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT-- 301
           +            A      +  L DS  +  + +   ++    F    ++ L   A   
Sbjct: 283 NSGREWTMNEGDGAFYGPKIDIILKDSDGKEHQTATIQLD----FQLPKRFELEYQAPAP 338

Query: 302 -------------FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                             G    V +    +G++  + A++   ++G    WP  + P K
Sbjct: 339 EIEAKGEITHDPILLAKQGPVTPVLIHRAILGSVERMMALLIEHYNG---RWPFWLNPSK 395

Query: 349 ISLINIKAHD-------QVCRDACEKIYARL-----SKVGCDVFWDDMGEQIGSQFAVAD 396
           ++++ +   +        V +      +  L       V   +  DD    +  + + A 
Sbjct: 396 VTILTVNDSEVVVKYAKVVKKQLAHHSHHNLFPRSRHAVEIPIELDDSPRSLKKKISEAK 455

Query: 397 LLGFPLQVIVGSKFVSDSKVEI 418
              +   +++G++ V D  V +
Sbjct: 456 RKRYGAIIVIGNQNVDDKTVTV 477


>gi|10800405|gb|AAG23138.2|AF245446_1 prolyl-tRNA synthetase [Giardia intestinalis]
          Length = 542

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 141/429 (32%), Gaps = 76/429 (17%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGK 91
               KG   + P G    + +  +  EE  + G  ++  PT+     L  ES     +  
Sbjct: 65  RYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEA 124

Query: 92  EMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E   +        ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +   
Sbjct: 125 ECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTK 184

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            ++R RE                                                     
Sbjct: 185 PLIRVREIHWN------------------------------------------------- 195

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      T E  V    D+             D I  + +  +         D      
Sbjct: 196 -EAHCCHATAEDAVSQLSDYW---------KVIDTIFSDELCFKGQKLRRVCWDRFPGAD 245

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +  + +      R ++   I   G ++S      +     +  +  +   GI + RV+A 
Sbjct: 246 YSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLAC 304

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAH-------DQVCRDACEKIYARLS-KVGCDV 379
            +    D  G++ P  +AP  + +I I          DQ       +I   L  K+G  V
Sbjct: 305 ALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRV 364

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVIN 436
             DD   + +G +    +L G PL++ VG + +++ +  +  R  G   +  + + EV+ 
Sbjct: 365 SIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMK 424

Query: 437 YASHRFSNN 445
            +SH   N+
Sbjct: 425 VSSHTTENH 433


>gi|88942337|sp|Q7UJ52|SYT_RHOBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|327537946|gb|EGF24643.1| threonyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 743

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 109/357 (30%), Gaps = 50/357 (14%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMK 158
           N +  +  P +      IF +  +SYR LP   ++    +R E      G+MR R     
Sbjct: 405 NHERYLLKPMNCPHHCQIFGAQPRSYRQLPLRLFEFGTVYRHEQTGELNGMMRVRGLTQD 464

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---LSHEFIVLAD 215
           DA+ F  T +  +  +         +   +GL    ++             S E    A+
Sbjct: 465 DAHIF-CTADQVEEEFRATIELTKFVLESVGLDDYRVQLSLRDPDSSKYVGSEENWDHAE 523

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                V           P E   +                                    
Sbjct: 524 GALRGVLEQSGLSFNEEPGEAAFYGPKADFMVRDC------------------------- 558

Query: 276 RVSARGIEVGHIFYFGT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVI 329
                   +G  +  GT    Y+LP      +KG D   H  V +     G++     ++
Sbjct: 559 --------IGRSWQLGTVQLDYNLPERFKLEYKGNDNATHRPVMIHRAPFGSLERFTGML 610

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   +W   ++P +I ++ +        +    +  +L + G  V  D    ++ 
Sbjct: 611 IEHFAGAFPMW---LSPEQIRVLPLSDKS---VEYATAVAKQLDEAGFKVTVDASDGKVQ 664

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   A +       +VG K     +V ++ R+ G    M ++E I          +
Sbjct: 665 AKIRNAQIDLVNYMAVVGPKEAESGQVALRDRIEGDLGSMPIKEAIARLQKEVETRQ 721


>gi|194742728|ref|XP_001953853.1| GF17974 [Drosophila ananassae]
 gi|190626890|gb|EDV42414.1| GF17974 [Drosophila ananassae]
          Length = 1709

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 133/434 (30%), Gaps = 72/434 (16%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ +  MI  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 1226 QVITKGEMIEYYDVSGCYILRHWSFAIWRAIKQWFDAEITRMGVKECYFPIFVSKAVLEK 1285

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    D    + +   PT E VM   +   ++SYR+LP    Q   
Sbjct: 1286 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNN 1345

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++     E +      +   Y  ++    L +IP+  
Sbjct: 1346 VVRWEFKQPTPFLRTREFLWQEGHTAFAGKEEADKEVLDILDLYALVYTH--LLAIPV-- 1401

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                          V     E + F   D+           F                  
Sbjct: 1402 --------------VKGRKTEKEKFAGGDYTTTV-----EAFISASGRAIQGATSHHLGQ 1442

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              S +      D   + K+                         ++ + G          
Sbjct: 1443 NFSKMFEIVYEDPETQQKKY-----------------------VYQNSWG---------- 1469

Query: 318  GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYA 370
                 R +  +I    D +G++ P  VA  +  ++     +   D       DAC+++  
Sbjct: 1470 --ITTRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKQLEK 1527

Query: 371  RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL         D       G +F   +L G PL++ VG K +   ++    R TG +  +
Sbjct: 1528 RLVGAEVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTGEKITI 1587

Query: 430  SLEEVINYASHRFS 443
             L +V         
Sbjct: 1588 PLADVEKKIPALLE 1601


>gi|195108339|ref|XP_001998750.1| GI23457 [Drosophila mojavensis]
 gi|193915344|gb|EDW14211.1| GI23457 [Drosophila mojavensis]
          Length = 1709

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 140/437 (32%), Gaps = 78/437 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ +  +I  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 1224 QVITKGELIEYYDVSGCYILRHWSFAIWKAIKNWFDAEITRRGVKECYFPIFVSKAALER 1283

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    D    + +   PT E VM   +   I+SYR+LP    Q   
Sbjct: 1284 EKDHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNN 1343

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++   T + +     ++   Y +I+    L +IP+  
Sbjct: 1344 VVRWEFKHPQPFLRTREFLWQEGHTAFATKDEADKEVLEILDLYAQIYTD--LLAIPV-- 1399

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTA 254
                          V     E + F   D+    +  I +         S +        
Sbjct: 1400 --------------VKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKM 1445

Query: 255  PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                  D   ++       +  ++ R I                                
Sbjct: 1446 FEIVYEDPETQQKTYVHQNSWGITTRTI-------------------------------- 1473

Query: 315  GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQVCRD---ACEK 367
                         +I    D +G++ P  VA  +  ++     +   D+   +   AC++
Sbjct: 1474 -----------GVMIMVHADNQGLVLPPHVACVQAIVVPCGITVNTKDEERAELLGACKE 1522

Query: 368  IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +  RLS  G     D       G +F   +L G P+++ +G K +   ++    R TG +
Sbjct: 1523 LECRLSGAGVRCEGDYRDNYSPGWKFNHWELKGVPIRIELGPKDMQAKQIVAVRRDTGEK 1582

Query: 427  EDMSLEEVINYASHRFS 443
              +++ +V         
Sbjct: 1583 LTIAMADVEKKIPALLE 1599


>gi|312385395|gb|EFR29915.1| hypothetical protein AND_00854 [Anopheles darlingi]
          Length = 1070

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 135/426 (31%), Gaps = 74/426 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           +++ +  MI  +   G Y            +      E  R G  E   P   S A L  
Sbjct: 584 QVITKGEMIEYYDVSGCYILRHWSFAIWKAIRNWFDAEITRLGVKECYFPIFVSRAALER 643

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +    D    + +   PT E VM   +   I+SYR+LP    Q   
Sbjct: 644 EKTHIADFAPEVAWVTKSGDSELAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNN 703

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++   T   +             +   L L    +  
Sbjct: 704 VVRWEFKHPQPFLRTREFLWQEGHTAFATKAEAD----------EEVLTILDL-YAKVYT 752

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +   I                             +    T+ +     +          A
Sbjct: 753 DLLAI---------------------------PVVKGRKTEKEKFAGGDYTTTVEAYISA 785

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGS 316
                               S R I+     + G  +S      ++  + K+  YV   S
Sbjct: 786 --------------------SGRAIQGATSHHLGQNFSRMFDIVYEHPETKEKEYVYQNS 825

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIY 369
           +GI   R +  +I    D +G++ P  VA  ++ ++         D+      ++C ++ 
Sbjct: 826 WGIT-TRTIGVMIMVHADNQGLVLPPRVACIQVVIVPCGITATTTDEERRRLYESCRELE 884

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G     D       G ++   +L G P+++ +G K +   +     R  G +  
Sbjct: 885 RSLVGAGIRCEGDYRDNYSPGWKYNHWELKGVPVRIELGFKDLQKGECVAVRRDNGTKLT 944

Query: 429 MSLEEV 434
           +  E+ 
Sbjct: 945 VRREQA 950


>gi|290981498|ref|XP_002673467.1| predicted protein [Naegleria gruberi]
 gi|284087051|gb|EFC40723.1| predicted protein [Naegleria gruberi]
          Length = 670

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 152/432 (35%), Gaps = 43/432 (9%)

Query: 22  SHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
            HK + +       H H+ G+ S LP G++  ++V + +RE   R G  E+  P + + D
Sbjct: 275 DHKKVGKDQELWFFHPHAPGMVSLLPHGKRICNSVQSQLREAYWRYGFAEVQSPIVLNKD 334

Query: 79  LWV-ESGRYDSYGKE-MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           LW  +SG  + + ++    L + + +  I  P ++ +   ++R+  +SYR+LP  + +  
Sbjct: 335 LWYYQSGSRNQWWQQYNFAL-EIDKEYYILKPYNKPIHCIMYRNKSRSYRDLPIRYVEFG 393

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             F D ++P     R R F   ++  F  + + +K            ++++ G +   + 
Sbjct: 394 SVFPDNIKPFRLNGRLRSFQKDESTIFCQS-DQTKKEVLNCLQMMGSVYNKFGFEFKIV- 451

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             + P+     +   +  +        S                  I            Y
Sbjct: 452 FSTKPVSFYGDNLEWIKLEGILETALKSLGHEWERDEGGAPSLGPRIEFYVSDNLKRFIY 511

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQM 314
                                    +++    +         + T+  +D   +   + +
Sbjct: 512 -------------------LCGIIQMDLMTPRF--------FNLTYTSSDNSAESKPICI 544

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            S  +       A+    + GK   WP  ++P +  +I I    + C +    +  R+ +
Sbjct: 545 SSTILNNTETFMALSAERYGGK---WPFWLSPRQAIIIPIC---EKCSEYANNVKDRIHQ 598

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D     I  +   A L  +   +I+G   +    V ++ R        S++E+
Sbjct: 599 AGYYVDVDMSFHTIEKKIRNAHLAQYNYILIIGVSEMETDCVNVRIRDGEQEGVKSIQEL 658

Query: 435 INYASHRFSNNR 446
           +     +    +
Sbjct: 659 LEEFEVKIREFK 670


>gi|84391304|ref|ZP_00991635.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376593|gb|EAP93471.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 460

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 80/229 (34%), Gaps = 5/229 (2%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD       L L    + Q + G+  W   G      +   IR++      
Sbjct: 234 LVRLEEAAKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYAEAMFTTSSEN-REYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVF-CTEDQVQQEVKACIEMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              G ++I ++  + P     S E    A+    Q   + +        
Sbjct: 410 TTFGFENIVVKLSTRPEQRVGSDEMWDRAEADLKQALEAMEIAYEIQEG 458


>gi|289064339|gb|ADC80545.1| proline aminoacyl-tRNA synthetase [Toxoplasma gondii]
          Length = 783

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 144/459 (31%), Gaps = 73/459 (15%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQN 62
           S       +++   +E  +   ++R+ MI  +   G Y   P      + V     +E  
Sbjct: 328 SSMLGVTAKKDENFSEWYTQA-IVRSEMIEYYDISGCYIMRPWAFHIWEKVQRFFDDEIK 386

Query: 63  RTGAIEMSVPTLQSA----DLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVM 114
           + G      P   S      L  E    + +  E+  +    D    + +   PT E +M
Sbjct: 387 KMGVENSYFPMFVSRHAQHKLEKEKDHVEGFSPEVAWVTHYGDSPLPEKIAIRPTSETIM 446

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
              +   I+S+R+LP    Q     R E +     +R+REFL ++ ++   T E +    
Sbjct: 447 YPAYAKWIRSHRDLPLKLNQWCSVVRWEFKQPTPFLRTREFLWQEGHTAHATEEEAWELV 506

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +   Y R +      ++P+      I G+ S         GE      K         
Sbjct: 507 LDILELYRRWYEEC--LAVPV------IKGEKSE--------GEKFAGGKKTTTVEAFIP 550

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           EN       + + +   +   +    +            +   + R + V          
Sbjct: 551 ENGRGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGCTTRSLGV---------- 600

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              M  T     G                              ++ P  VA  ++ +I I
Sbjct: 601 ---MIMTHGDDKG------------------------------LVIPPRVASVQVVIIPI 627

Query: 355 KAHDQVCRDA---CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKF 410
              D+   +    C ++   L K    V  DD      G ++   ++ G PL++ +G K 
Sbjct: 628 LFKDENTGEILGKCRELKTMLEKADIRVRIDDRSNYTPGWKYNHWEVKGVPLRLELGPKD 687

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++     +  R TG    +S  ++           +  L
Sbjct: 688 LAKGTARVVRRDTGEAYQISWADLAPKLLELMEGIQRSL 726


>gi|46107732|ref|XP_380925.1| hypothetical protein FG00749.1 [Gibberella zeae PH-1]
          Length = 499

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 156/493 (31%), Gaps = 106/493 (21%)

Query: 4   SKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           S+++     +  P D      +  L    I  +S G   +LP G +  + +   +R++  
Sbjct: 28  SRFYSQKTEKREPPDHRKLGLQQELFISSI--YSPGSPIFLPNGARIFNRLVDFLRKQYV 85

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-------------ADRNDKA------ 103
           R G  E+  PT+    LW +SG  ++Y  +M  +                + +       
Sbjct: 86  RYGFEEVITPTIYKKSLWAKSGHLENYADDMYAVRGNTEPPPQHDGCCGSHQEYLKPEEE 145

Query: 104 ----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMK 158
                   P +      IF S   SYR+LP  +       R+E+     G+ R R F   
Sbjct: 146 EEGDYGLKPMNCPGHCLIFASKRHSYRDLPVRYADFSPLHRNEISGALSGLTRVRRFHQD 205

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFH--RLGLKSIPMRAESGP----IGGDLSHEFIV 212
           D + F   P   +    K       ++   R G     +   + P    IG +   +   
Sbjct: 206 DGHIF-CRPSQVEEEIKKTLDFVKVVYTVLRFGASYR-LALSTRPKDHYIGTEAEWD--- 260

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A++   +   +          +                     A      +  L DS  
Sbjct: 261 QAESALKRALDASGMEWGVKEGDG--------------------AFYGPKIDIVLTDSDG 300

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSY 317
           ++ + +   ++    F    ++ L   A                     G    V +   
Sbjct: 301 KDHQTATIQLD----FQLPKRFELEYQAPAPEYEARGETTEDPALLAEYGPVRPVMIHRA 356

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI--------- 368
            +G++  + A++   +DGK   WP  + P +  ++ +        D  E +         
Sbjct: 357 VLGSVERLMALLIEKYDGK---WPFWLNPRQAIVLTVNT-STTVLDWAEHVRDVLVGQNK 412

Query: 369 --YARLSK-------------VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
             Y +L                G  V  D     +G++   A   G+   ++VG   V +
Sbjct: 413 QFYEQLESGALPSSQDHAFRPTGLAVDVDTTARPLGAKIKEARNNGYGQILVVGEDDVKN 472

Query: 414 SKVEI-KHRLTGI 425
            +V + K RLT  
Sbjct: 473 QQVALGKERLTPE 485


>gi|687792|gb|AAC43729.1| putative threonyl-tRNA synthetase; similar to E. coli threonyl-tRNA
           synthetase SwissProt Accession Number P00955
           [Haemophilus influenzae]
 gi|1587744|prf||2207242E ORF 4
          Length = 443

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 5/220 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y   + +   RD       L L    + + + G+  W   G      +   +R + 
Sbjct: 228 QLAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKL 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +    E+  P +    LW ++G + +Y   M      N +     P +      IF   
Sbjct: 286 KQYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSEN-REYAIKPMNCPGHVQIFNQG 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +         
Sbjct: 345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEDQIESEVTSCIKM 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
              I+   G  +I ++  + P     S E    A+ G   
Sbjct: 404 VYDIYSTFGFTNIAVKLSTRPENRIGSDEMWDRAEAGLAA 443


>gi|119186087|ref|XP_001243650.1| hypothetical protein CIMG_03091 [Coccidioides immitis RS]
          Length = 560

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 135/435 (31%), Gaps = 84/435 (19%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  I      L        S G   + P G    + + + +R +  + G  E+  PT+  
Sbjct: 117 DHRIIGTDQDLFGS--TPFSPGSPYFHPDGAHIFNKLMSFLRAQYKQYGFEEVITPTMYK 174

Query: 77  ADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKS 124
             LW +SG +  Y  +M  +  R             D+     P +      +F S  +S
Sbjct: 175 KSLWEKSGHWYIYKDDMYEVRGRGATGQTVDVEIGEDEQYGLKPMNCPGHCVLFASKTRS 234

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +     R+E+     G+ R R F   D + F   PE  +            
Sbjct: 235 YRSLPVRFAEFSPLHRNEISGSLSGLTRVRRFHQDDGHIF-CRPEQIEREIELTLQFTES 293

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL+   +   + P                E     S    +          D   
Sbjct: 294 VLSTFGLEDYRLVLSTRP----------------EKDYLGSLALWNDAENQLKDALDKSG 337

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y       + ++ DS  +  ++S   +++     FG +          
Sbjct: 338 KPWHINEGDGAFYGPKI---DLQIRDSRGKYHQLSTIQLDMNLPQRFGLE---------- 384

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                           G++    A++   ++G    WP  ++P +  ++ +    QV R 
Sbjct: 385 -------------AIFGSLERFFALLAEHYNG---RWPFWLSPRQGIILTVNNDPQVLR- 427

Query: 364 ACEKI------YARLS----------------KVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             + +      Y  L+                +    +  D     +G +   A    + 
Sbjct: 428 TAQTVASGMRGYQSLTFNESEVVATPGLLYPAQATFQIDVDTSSRSLGKKIREAMGRKYK 487

Query: 402 LQVIVGSKFVSDSKV 416
           L  ++G   VS+  V
Sbjct: 488 LIFVIGPSDVSNGSV 502


>gi|269837371|ref|YP_003319599.1| prolyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269786634|gb|ACZ38777.1| prolyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 483

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 154/454 (33%), Gaps = 84/454 (18%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     E  R AE+A    +  T ++           P G    +N+ A +      TG 
Sbjct: 18  FDRWYVEVVRRAELADESPVRGTRVVR----------PYGFALWENMQAELDRRIKETGV 67

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSH 121
                P       L  E+   + +  E+  +        ++     PT E ++  ++   
Sbjct: 68  QNAYFPLFIPQSMLAREAEHVEGFAPEVAWVTRGGNKELEEPWAVRPTSEAIICPMYARW 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFV 179
           ++SYR+LP    Q     R E RP       R FL    + +    T   +     +   
Sbjct: 128 VQSYRDLPILINQWNSVVRWEERP-------RAFLRSLEFLWQEGHTAHATLEEAEERTR 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L                             V  D  ET++          IP   T+ 
Sbjct: 181 LMLE----------------------------VYRDFVETELAV------PVIPGRKTES 206

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +                            +++   K+     ++ G     G  +     
Sbjct: 207 EKFAGALRTY-----------------TIEAMMGGKKW---ALQSGTSHNLGDHFGRVFG 246

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD- 358
             F   +G+  Y    S+G+ + R+V AVI    D +G+  P  VAP ++ ++ I   + 
Sbjct: 247 IEFLDRNGERRYAFNTSWGL-SFRMVGAVIMVHGDDRGLKLPPRVAPIQVVIVPIWRKES 305

Query: 359 --QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    A +++   L  V   VF D    +  G +F   +L G P+++ +G + V++ +
Sbjct: 306 EREAVEAAVDRVRDALLPV-ARVFVDRRDDKTPGWKFNEWELKGVPVRLEIGPRDVANDQ 364

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V +  R T  ++ +S+ ++    +    + +  L
Sbjct: 365 VTLVRRDTHEKQAISITDLAGRITEILDDIQANL 398


>gi|308190360|ref|YP_003923291.1| proline--tRNA ligase [Mycoplasma fermentans JER]
 gi|319777760|ref|YP_004137411.1| prolyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|307625102|gb|ADN69407.1| proline--tRNA ligase [Mycoplasma fermentans JER]
 gi|318038835|gb|ADV35034.1| Prolyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 478

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 149/414 (35%), Gaps = 68/414 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P      + +   + E     G   + +P L    L+  E      +  E+  
Sbjct: 34  KGTIVFKPNSYGIWEQIQKNLNECFREKGVQNVYLPLLIPEKLFNKEKDHIAGFNPELAT 93

Query: 96  LA---DRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D++ D+ +   PT E +  D+F++ I+SY++LP  + Q     R E +     +R
Sbjct: 94  ITKVGDKDLDEKVFIRPTSEVLFADLFKNSIESYKDLPMIYNQWANVVRWE-KTTNPFLR 152

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++    P  ++     M  +Y +        +IP       IG     E  
Sbjct: 153 SREFLWQEGHTCHSNPLEARKFTKGMISTYSKFLK--NFLAIPTI-----IGKKTPKEKF 205

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A +  T     KD       + +    +      I  +                    
Sbjct: 206 AGACSTYTVEAMMKDGRALQAGTSHYLAQNFSKQFEIQFKTENNE--------------- 250

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                 Y+                    S+G+ + R++ A+I +
Sbjct: 251 --------------------LDYA-----------------YQTSWGV-STRLLGAIIMT 272

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +GII P  VAP +I ++ +    ++     C+ +Y  LS+    V  D   +  G 
Sbjct: 273 HGDNRGIIIPPRVAPIQIDVLELFANKNKEVHTYCDNLYKDLSRK-FRVRLDSSDKGPGF 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + + +++ G PL++ VG K + +  V I  R T  + ++   EV +      + 
Sbjct: 332 KASNSEIQGVPLRIEVGPKDIENKSVTIVRRDTLEKINIKQSEVKDQVETLLNQ 385


>gi|253744932|gb|EET01065.1| Prolyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 534

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 148/433 (34%), Gaps = 76/433 (17%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGK 91
               KG   + P G    + +  +  EE  + G  +   PT+       + G     +  
Sbjct: 57  RYPVKGCVVFRPYGFFMENAIMKLCEEEYAKIGISQALFPTVIPESFLKKEGDHIKGFEA 116

Query: 92  EMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E   +        ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +   
Sbjct: 117 ECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTK 176

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            ++R RE                                                     
Sbjct: 177 PLIRVREIHWN------------------------------------------------- 187

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      T E  V    D+             DII  + +  +         D      
Sbjct: 188 -EAHCCHATAEDAVSQLSDYWKVV---------DIIFSDELCFKGQKLRRVCWDKFAGAD 237

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +  + +      R ++   I   G ++S      +     ++ +  +   GI + RV+A 
Sbjct: 238 YSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANENVHPYLTCAGI-STRVLAC 296

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAH-------DQVCRDACEKIYARLS-KVGCDV 379
            +    D +G++ P  +AP  + +I I          D+   +   +I   L  K+G  V
Sbjct: 297 ALSIHGDSRGLVLPPLIAPIHVVIIPIGCGKKNNQESDRQVMEKVNEIADTLKLKLGLRV 356

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVIN 436
             DD   + +G +    +L G PL++ +G + +++++  +  R  G   ++ +S+ +++ 
Sbjct: 357 SIDDDFSKSMGDKLYYYELKGVPLRIEIGQRDLANNQCIVVPRDMGKDKKKAISITDILK 416

Query: 437 YASHRFSNNRPVL 449
            +S+   N+  V+
Sbjct: 417 VSSYATENHELVI 429


>gi|302653826|ref|XP_003018730.1| hypothetical protein TRV_07235 [Trichophyton verrucosum HKI 0517]
 gi|291182401|gb|EFE38085.1| hypothetical protein TRV_07235 [Trichophyton verrucosum HKI 0517]
          Length = 533

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 137/414 (33%), Gaps = 56/414 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G   L+ +   +R +  + G  E+  P +    LW  SG + +Y  +M  +
Sbjct: 85  PGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMYEV 144

Query: 97  ADRND----------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             R D          +     P +      +F+S   SYR LP  +       R+E+   
Sbjct: 145 GGRGDTGETSDTSENEIYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVSGS 204

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGG 204
             G+ R R F   D + F   P                +    GL     +   + P   
Sbjct: 205 LSGLTRVRRFHQDDGHIF-CRPGQIGSEIQLALKFADTVLQTFGLADGYRLVLSTRPEKD 263

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              S E    A+    Q   +          +                     A      
Sbjct: 264 FIGSLEQWENAEQQLRQALDNSGLSWELNEGDG--------------------AFYGPKI 303

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIGA 321
           + ++ DS  +  ++S   +++     F  +Y +P  +        G+   V +     G+
Sbjct: 304 DLQIQDSQGKYHQLSTIQLDMNLPQRFELEYLVPEGSEEYDPATGGRATPVLIHRAIFGS 363

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKI-------YARLS 373
           +    A++   ++G+   WP  ++P +  L+ I    +Q   DA  KI        +R S
Sbjct: 364 LERFFALLIERYNGQ---WPFWLSPRQAILLTIGKGLEQAAEDAVAKISGFEPITSSRPS 420

Query: 374 KVG---------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             G          +V  D     +  +   A    + L  I+G K V+D  V+I
Sbjct: 421 STGLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYNLVFIMGPKNVADGSVDI 474


>gi|320582734|gb|EFW96951.1| prolyl-tRNA synthetase, putative [Pichia angusta DL-1]
          Length = 536

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P  +     A++ + +L+++ G + Q + G+  WLPLG   + N+  IIR+  ++ G  
Sbjct: 12  VPTGKLAKNIADLTTTELLMKAGYVSQPNAGLTHWLPLGLSTIRNIEEIIRKHHDKAGCQ 71

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S+  +    LW ++GR+ +   E+ ++ D          T EE MT + +    SY+ 
Sbjct: 72  EVSLSVMSHQSLWDKTGRWQN--DELFKVGD-----FCLAATAEEEMTQLVQRTADSYKK 124

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  K+R+E RPR G++R REF+MKDAYSFD+    +  S+ KM   Y  IF  
Sbjct: 125 LPVIAYQIGRKYRNEKRPRGGLLRGREFVMKDAYSFDVDQSSALRSFEKMNQVYYDIFKE 184

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           L +  +   A+SG IGGDLS+E+  L+++GE  +      
Sbjct: 185 LNVPFVKANADSGAIGGDLSYEWHFLSESGEDTLLECDAC 224



 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 6/156 (3%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K  S +GIEVGH FY G +YS P+ A F  ++G+  + +MG YGIG  R+VAA+ E + D
Sbjct: 356 KLKSFKGIEVGHTFYLGKRYSEPLDAGFVDSEGRRQHYEMGCYGIGVSRLVAAIAEVTRD 415

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G+ WP SVAP ++ ++   ++      A EK  ++L  +   V  D     +G + A 
Sbjct: 416 ADGLRWPASVAPIQVDIVVAGSYTGDLG-AVEKFCSQLDGLRYRV--DATEGHLGEKLAR 472

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIK--HRLTGIRED 428
           +  LG PLQVI+G ++    ++E++   R  G  E 
Sbjct: 473 SKRLGTPLQVIIGKQY-PKIEIELRGLRRDLGKLES 507


>gi|253567818|ref|ZP_04845229.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251841891|gb|EES69971.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 556

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 129/372 (34%), Gaps = 60/372 (16%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIRE 59
           +    +L +L+E   RD      +  ++  M  +   KG+  WLP G      +   +R 
Sbjct: 226 KMLDEYLVLLEEAKKRDHRKIGKE--MQLFMFSETVGKGLPMWLPKGTALRLRLQEFLRR 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDI 117
            Q R    E+  P + +  L+V SG Y  YGK+  +        +     P +     +I
Sbjct: 284 IQTRYDYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEI 343

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +++  +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + +
Sbjct: 344 YKNFPRSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLR 402

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMD 229
           +      +F  +  ++   +            IG D + E        E  +  + +   
Sbjct: 403 VMDIISIVFRSMNFQNFEAQISLRDKVNREKYIGSDDNWE------KAEQAIIEACEEKG 456

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P                                 E    +    K        +G  + 
Sbjct: 457 LPAK------------------------------IEYGEAAFYGPKLDFMVKDAIGRRWQ 486

Query: 290 FGT---KYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            GT    Y+LP      + G+D + H  V +     G+M    AV+     GK  +W   
Sbjct: 487 LGTIQVDYNLPERFELEYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW--- 543

Query: 344 VAPFKISLINIK 355
           + P +++++ I 
Sbjct: 544 LTPDQVAILPIS 555


>gi|302499120|ref|XP_003011556.1| hypothetical protein ARB_02109 [Arthroderma benhamiae CBS 112371]
 gi|291175108|gb|EFE30916.1| hypothetical protein ARB_02109 [Arthroderma benhamiae CBS 112371]
          Length = 533

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 137/414 (33%), Gaps = 56/414 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G   L+ +   +R +  + G  E+  P +    LW  SG + +Y  +M  +
Sbjct: 85  PGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMYEV 144

Query: 97  ADRND----------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             R D          +     P +      +F+S   SYR LP  +       R+E+   
Sbjct: 145 GGRGDTGEASETSENEIYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVSGS 204

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGG 204
             G+ R R F   D + F   P                +    GL     +   + P   
Sbjct: 205 LSGLTRVRRFHQDDGHIF-CRPGQIGSEIQLALKFADTVLQTFGLAEGYRLVLSTRPEKD 263

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              S E    A+    Q   +          +                     A      
Sbjct: 264 FIGSLEQWENAEQQLRQALDNSGLSWELNEGDG--------------------AFYGPKI 303

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIGA 321
           + ++ DS  +  ++S   +++     F  +Y +P  +        G+   V +     G+
Sbjct: 304 DLQIQDSQGKYHQLSTIQLDMNLPQRFELEYLVPEGSEEYDPATGGRATPVLIHRAIFGS 363

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKI-------YARLS 373
           +    A++   ++G+   WP  ++P +  L+ I    +Q   DA  KI        +R S
Sbjct: 364 LERFFALLIERYNGQ---WPFWLSPRQAILLTIGKGIEQAAEDAVAKISGFEPITSSRPS 420

Query: 374 KVG---------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             G          +V  D     +  +   A    + L  I+G K V+D  V+I
Sbjct: 421 STGLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYNLVFIMGPKNVADGSVDI 474


>gi|332967802|gb|EGK06905.1| threonine--tRNA ligase [Desmospora sp. 8437]
          Length = 279

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 106/310 (34%), Gaps = 33/310 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G    + + +  R+ Q   G  E+  P + +  LW +SG +D Y 
Sbjct: 1   MFSEEAPGMPFYLPKGMTIRNELESFSRKLQKEAGYQEVRTPLMMNQRLWEQSGHWDHYR 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + M      ++ A    P +      +F+  I+SYR+LP    +     R EL     G+
Sbjct: 61  ENMY-FTHVDETAFSIKPMNCPGHMLVFKHGIRSYRDLPLRLAEFGQVHRHELSGALHGM 119

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F   DA+ F + P+  +           RI+   G     +   + P     S +
Sbjct: 120 FRVRTFTQDDAHIF-VRPDQIEAEVQAAMQLVDRIYSVFGFPY-TVELSTRPEDSMGSEQ 177

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+T    V             E                     A      +  + D
Sbjct: 178 LWNQAETALKNVLDQSGVEYRINEGEG--------------------AFYGPKIDFHIRD 217

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAV 328
           +L  + + +   ++    F    K+      ++ G  +G+   V +     G++     V
Sbjct: 218 ALKRSHQCATIQLD----FQMPEKF----DLSYVGEGNGRHRPVVIHRAIFGSIDRFIGV 269

Query: 329 IESSHDGKGI 338
           +     G   
Sbjct: 270 LVEHTGGAFP 279


>gi|302774721|ref|XP_002970777.1| hypothetical protein SELMODRAFT_94171 [Selaginella moellendorffii]
 gi|300161488|gb|EFJ28103.1| hypothetical protein SELMODRAFT_94171 [Selaginella moellendorffii]
          Length = 528

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/462 (17%), Positives = 162/462 (35%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +    AE+A +  +  T +I           P G    + V + +  +  
Sbjct: 55  RSQDFSRWYLDVIDAAELADYGPVRGTMVIR----------PYGYAIWEFVQSWLDAKFK 104

Query: 63  RTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P L        E+   + +  E+  +        ++ ++  PT E ++  +
Sbjct: 105 ETGHSNMYFPQLIPYSFIEKETSHVEGFSPELALVTIGGGKELEEKLVVRPTSETMVNHM 164

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+S+R+LP    Q     R E R     +R+ EFL ++ ++   T + ++    +M
Sbjct: 165 FAQWIRSHRDLPLLVNQWANVTRWERR-TKPFIRTLEFLWQEGHTAHATAQEAEEEALRM 223

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y R F      ++   A    +G     E    A                       
Sbjct: 224 IEVY-RTF------AVEQAAMPVIVGRKSRLERFAGA----------------------- 253

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I +                  HN     +     + +    ++ HI+         
Sbjct: 254 ----ICTYTIEAMMGDRRALQAGTSHNLGQNFARAFETQFTDVNGDLQHIWQ-------- 301

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                             S+G+ + R+V  +I +  D KG++ P  +AP ++ ++ I   
Sbjct: 302 -----------------TSWGM-STRMVGGIIMTHGDDKGLMLPPKLAPIQVVIVPIWKK 343

Query: 358 ---DQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
               +    A  K+ + +   G  V  D   ++  G +F   +L G P+++ +G K V++
Sbjct: 344 GDEQEAVLQAAHKVESLVRAAGIRVKLDTFDQRTPGWKFNHWELKGVPIRIEIGPKDVAN 403

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
           + V +  R      G    + ++   +I++   +  + +  L
Sbjct: 404 NSVVVARRDVPGKAGKEFGIFMDRSVLIDHLRAKLDDIQSSL 445


>gi|238810182|dbj|BAH69972.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 482

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 149/414 (35%), Gaps = 68/414 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P      + +   + E     G   + +P L    L+  E      +  E+  
Sbjct: 38  KGTIVFKPNSYGIWEQIQKNLNECFREKGVQNVYLPLLIPEKLFNKEKDHIAGFNPELAT 97

Query: 96  LA---DRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D++ D+ +   PT E +  D+F++ I+SY++LP  + Q     R E +     +R
Sbjct: 98  ITKVGDKDLDEKVFIRPTSEVLFADLFKNSIESYKDLPMIYNQWANVVRWE-KTTNPFLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++    P  ++     M  +Y +        +IP       IG     E  
Sbjct: 157 SREFLWQEGHTCHSNPLEARKFTKGMISTYSKFLK--NFLAIPTI-----IGKKTPKEKF 209

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A +  T     KD       + +    +      I  +                    
Sbjct: 210 AGACSTYTVEAMMKDGRALQAGTSHYLAQNFSKQFEIQFKTENNE--------------- 254

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                 Y+                    S+G+ + R++ A+I +
Sbjct: 255 --------------------LDYA-----------------YQTSWGV-STRLLGAIIMT 276

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +GII P  VAP +I ++ +    ++     C+ +Y  LS+    V  D   +  G 
Sbjct: 277 HGDNRGIIIPPRVAPIQIDVLELFANKNKEVHTYCDNLYKDLSRK-FRVRLDSSDKGPGF 335

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + + +++ G PL++ VG K + +  V I  R T  + ++   EV +      + 
Sbjct: 336 KASNSEIQGVPLRIEVGPKDIENKSVTIVRRDTLEKINIKQSEVKDQVETLLNQ 389


>gi|153824261|ref|ZP_01976928.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|126518216|gb|EAZ75441.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
          Length = 345

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 81/229 (35%), Gaps = 5/229 (2%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 120 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 177

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 178 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 236

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 237 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 295

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              G ++I ++  + P     S E    ++        + D        
Sbjct: 296 TTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEG 344


>gi|322706591|gb|EFY98171.1| prolyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 556

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 143/439 (32%), Gaps = 78/439 (17%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
            +++L+  M+  +    G +   PL       +           G  E S P   S   L
Sbjct: 62  QEVVLKAEMVEYYHEISGFFVLRPLSMHIWSTIRKWFSGHIEELGVEEASFPLFLSKTSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    D +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 122 DKEKDHVDGFAPELAWVERAGDKKLDVPVAIRPTSEAVMYPYYAKWIRSHRDLPLRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 182 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEQ--LLAVPV 239

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQW 252
                           V     E + F    +    +  IPS         S        
Sbjct: 240 ----------------VRGRKTENEKFAGGYYTTTVEGYIPSNGRGIQGGTSHCLGQNFS 283

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                   D HN+                 +  H++                        
Sbjct: 284 KMFEITVEDPHNKG----------------QHVHVWQ----------------------- 304

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDAC 365
              S+G+ + RV+  ++    D KG++ P  VA  +   I +  +        Q   D  
Sbjct: 305 --NSWGL-STRVIGVMVMVHGDDKGLVLPPRVAQTQAIFIPVGINKNTTPEDRQKHEDQI 361

Query: 366 EKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E + A L K G     D   G     +F   ++ G P+++  G K  +   V    R TG
Sbjct: 362 EDMRATLKKAGVRTQSDWREGYTPAWKFNDWEMKGVPVRLEFGPKDAAKEVVSFARRDTG 421

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + + ++         
Sbjct: 422 EKGTIPIADIATKIPELLE 440


>gi|171687735|ref|XP_001908808.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943829|emb|CAP69481.1| unnamed protein product [Podospora anserina S mat+]
          Length = 514

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 155/467 (33%), Gaps = 70/467 (14%)

Query: 17  DAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D      H+ +  T +   +S G   +LP G +  + + + +R +  R G  E+  P + 
Sbjct: 79  DHRTLGLHQKLFTTSI---YSPGSAFFLPSGTRIFNRLVSFLRNQYVRYGFEEVITPLIY 135

Query: 76  SADLWVESGRYDSYGKEMLRL----------ADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             DLW +SG  ++Y ++M  +           +  D+     P +      IF S  +S+
Sbjct: 136 KKDLWAKSGHLENYAQDMYTVTGARHASPEETEETDREYGLKPMNCPGHCLIFSSQKRSF 195

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  +       R+E      G+ R R F   D + F   P   +    K        
Sbjct: 196 RDLPIRYADFSPLHRNENTGSLTGLTRVRRFHQDDGHIF-CRPVQIEEEIKKSLEFVKHT 254

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LGL    +   + P     S E    A+    +              +         
Sbjct: 255 YATLGLGPYRLALSTRPEQYIGSLEDWENAENALKRALDKSGTDWTVNEGDG-------- 306

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA---- 300
                       A      +  L DS  +  + +   ++    F    ++ L   A    
Sbjct: 307 ------------AFYGPKIDIVLRDSHGKEHQTATIQLD----FQLPKRFELEYIAPAPE 350

Query: 301 ------TFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                 T    +     G    V +    +G++  + A++   +DGK  +W   + P +I
Sbjct: 351 LEQKGETTTDPELLASFGPVRPVMIHRAVLGSVERLMALLIEHYDGKYPLW---LNPNQI 407

Query: 350 SLINIKAHDQVCRDACEKIYARLSKV--------GCDVFWDDMGEQIGSQFAVADLLGFP 401
            +I +    +   +   ++  RL  +           V  D     I  + A A   G  
Sbjct: 408 KIITLNDT-EPVVEWATRVRERLLGIADGDVTPTHFAVDLDTSARPIAVKKAEAVSAGVS 466

Query: 402 LQVIVGSKFVSDSKVEI---KHRLTGIREDMSLEEVINYASHRFSNN 445
           + V +G+  V    + +       +  R  M  EE+  +   R + +
Sbjct: 467 VVVTIGASEVEGKSLSVDMSAVTGSRKRVTMGPEELRAWVGERVAAH 513


>gi|325279815|ref|YP_004252357.1| Prolyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324311624|gb|ADY32177.1| Prolyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 491

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 154/435 (35%), Gaps = 53/435 (12%)

Query: 23  HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++L+++ G+  Q   +G     P G    + +   + +   +TG +    P L     + 
Sbjct: 17  NELVVKAGLAEQSVVRGCMVIKPYGYAIWEKIQRQLDDMFKQTGHVNAYFPLLIPKSFFS 76

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            E+   + + KE                                          +   +R
Sbjct: 77  KEADHVEGFAKE----------------------------------------CAVVTHYR 96

Query: 141 DELRPRFGVMRSREFLMKDAYSFD--LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            +  P  G +        +        +     ++Y     SY  +       +  MR E
Sbjct: 97  LKNDPNGGGVVVDPAAKLEEEYIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVMRWE 156

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   + EF  L   G T     ++ ++          D   +  ++     +   +
Sbjct: 157 MRTRMFLRTAEF--LWQEGHTAHATKEEALEEANKMVRVYADFAQNWMAVPVIMGSKSES 214

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                  + F    E      + ++ G   + G  ++      F  A+GK  YV   S+G
Sbjct: 215 ERFAGALETF--TIEALMQDGKALQAGTSHFLGQNFAKAFDVQFTNAEGKLEYVWATSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKV 375
           + + R++ A+I +  D  G++ P  +AP ++ ++ I    +  +   +K+     +L   
Sbjct: 273 V-STRLMGALIMAHSDDNGLVLPPKLAPLQVVIVPIYKGAEGLKKISDKVQGLIEKLRAK 331

Query: 376 GCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD   ++ G +FA  +L G P+++ +G + + +  +E+  R T  +E + LE +
Sbjct: 332 GISVKYDDRDTQKPGWKFADYELKGVPVRLAMGERDLENGTIEVARRDTLTKETLPLEGI 391

Query: 435 INYASHRFSNNRPVL 449
           + +      + +  +
Sbjct: 392 VGHIEKLLEDIQENI 406


>gi|159476198|ref|XP_001696198.1| hypothetical protein CHLREDRAFT_167047 [Chlamydomonas reinhardtii]
 gi|158282423|gb|EDP08175.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 688

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 134/436 (30%), Gaps = 54/436 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +  K +   ++E    A+   H+++         H  S G   +LP G +  +N+   IR
Sbjct: 269 KLLKDYQHRMEE----AKKRDHRVVGVQQELFFFHPLSPGSCFFLPHGARIYNNLVGYIR 324

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E+       E+  P + + DLW  SG  D Y + M    D   +     P +        
Sbjct: 325 EKYWEYEYEEVITPNIYNFDLWKTSGHADHYRENMFSF-DIEKQEFGLKPMNCPA----- 378

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+     R    + +   L +     P    +    F      S                
Sbjct: 379 RALHAPDRLGTLSPHTTTLLYPHRPPPPPPPVPGYAFTSLVIMSVMA-------EVQGFL 431

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++   GL    M   + P G     E    A+   T    S        P +   
Sbjct: 432 KLLGEVYEVFGLDC-TMALSTRPEGYLGDIELWNKAEQALTDALNSTGKAWVLNPGDG-- 488

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      +  ++D+L    + +   ++      FG +Y+   
Sbjct: 489 ------------------AFYGPKIDITVYDALRRKFQCATVQLDFQLPIRFGLEYASEA 530

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                     +  V +    +G++  + A++     GK   WP  + P ++ ++ I    
Sbjct: 531 GTL-------ERPVIVHRAVLGSVERMFAILTEHFAGK---WPFWLNPRQVMVVPI---S 577

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +    +   L   G     D    ++  +   A L  +   ++VG    +   V +
Sbjct: 578 ENSVEYAFTVRKELRSAGLHCDVDSTDRKMQKKVREAQLAQYNYILVVGEAEKTAQTVNV 637

Query: 419 KHRLTGIREDMSLEEV 434
           + R   +     L +V
Sbjct: 638 RTRDNVVHGMFKLSDV 653


>gi|317030877|ref|XP_001392403.2| prolyl-tRNA synthetase [Aspergillus niger CBS 513.88]
          Length = 576

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 16/241 (6%)

Query: 2   RRSKYFLPI--LQENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P   + + P   E    + L++R G + Q   GI+  LPLG +  D +  +I 
Sbjct: 9   RVSNFWIPTGGITKKPVQGEKEDANDLLIRGGFLRQAYSGIFHMLPLGLRVQDKLERLID 68

Query: 59  EEQNR------------TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
           +                 GA ++S+ +L + +LW +SGR    G E+ R  DR +   + 
Sbjct: 69  KHMRTVVIEFFLIGWISAGASKVSLSSLSAQELWEQSGRL-KEGSEIFRFQDRKESRFLL 127

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PTHEE +T +     KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD  
Sbjct: 128 APTHEEEITTLVGHLTKSYRDLPVRVYQISRKYRDEQRPRQGLLRGREFIMKDLYTFDYN 187

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            E +  +Y  +  +Y  +F  L +  +   A+SG +GG LSHEF   ++ GE  V     
Sbjct: 188 AENALKTYTAVKKAYTELFDELKIPYLVAAADSGNMGGSLSHEFHFASNKGEDTVXSCSS 247

Query: 227 F 227
            
Sbjct: 248 C 248



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 76/137 (55%), Gaps = 1/137 (0%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   +QMG +GIG  R+++AV ++  D KG+ WP ++AP+++ ++  K  ++      + 
Sbjct: 440 QLVPMQMGCHGIGVSRMISAVADNLADSKGLNWPRAIAPYEVIVVPAKGMEEEAVQIYDA 499

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + +  +    DV  DD  +Q+G +   ADL+G+P+ V+VG  +     +E++ R   +RE
Sbjct: 500 LTSEPTTA-LDVILDDRDKQMGWKLGDADLIGYPVIVVVGKGWKKQRTLEVQCRRLEVRE 558

Query: 428 DMSLEEVINYASHRFSN 444
           D++LE +  +       
Sbjct: 559 DVALEALPEFVGSLLEK 575


>gi|219110281|ref|XP_002176892.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411427|gb|EEC51355.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 671

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 139/443 (31%), Gaps = 94/443 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKE---- 92
           G     P G    D V   +  +    GA     P L        E+   D + KE    
Sbjct: 196 GCMVIKPWGMSLWDRVRTELDAKIQAHGAENAYFPLLIPQSFLSKEAEHVDGFAKECAVV 255

Query: 93  --------------MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                         M+      +  +I  PT E ++  +FR  I S+R+LP    Q    
Sbjct: 256 THHRLTTNPDGSGLMVDPEAALEDPLIVRPTSETMIWYMFRKWIVSHRDLPLKINQWANV 315

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            R E       MR+R FL    + +    T   ++        + L  +  L    + M 
Sbjct: 316 MRWE-------MRTRPFLRTSEFLWQEGHTAHATRDGAIADAQAMLDNYATLCEDLLAMP 368

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
              G      S  F    DT   +      +                             
Sbjct: 369 VVRGV--KSPSERFAGAEDTYTIEALMQNGW----------------------------- 397

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                                    ++ G   + G  +    + TF+  +G    V   S
Sbjct: 398 ------------------------ALQSGTSHFLGQSFGKAFNVTFQDENGTQQDVWGTS 433

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-----VCRDAC-EKIYA 370
           +G  + R++ A+I +  D  G++ P  VAP ++ ++ I             D    ++ A
Sbjct: 434 WG-ASTRLIGALIMTHSDDAGLVLPPKVAPAQVIIVPIPPKKDDAETKQAMDIAMNQLTA 492

Query: 371 RLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG---IR 426
            L   G     DD    + G++F   +  G PL++ +G + V ++    K+R       +
Sbjct: 493 SLKAEGLRFKVDDRDFVRSGAKFFEWERKGVPLRIEIGPRDVRNNVCVFKYRAGENADEK 552

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
           + + L E    A+    + +  L
Sbjct: 553 QTIPLSEAAASATAGLKSMQQDL 575


>gi|315282168|ref|ZP_07870635.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313614185|gb|EFR87862.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 252

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 3/230 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     + + +   + +     +D     ++         +  D+   ++ D  P+ + V
Sbjct: 24  ENTRVFADNAVKDIVNAVAGANEDGFHYINVNPDRDFTVTSYFDLRMIQVGDLSPDGQGV 83

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIEVGHIF   TKYS  M+AT    +G+   + MG YGIG  R+++A+ E S+D 
Sbjct: 84  IKFAEGIEVGHIFKLRTKYSQAMNATILDENGRAQPIIMGCYGIGVSRILSAIAEQSNDE 143

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W   ++PF + LI +    +      E +Y  L   G  V  DD  E+ G +FA A
Sbjct: 144 NGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQGAGFSVLIDDRAERAGVKFADA 203

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           DL+G P+++ VG K  ++  VE+K R TG   ++  +E++N     F + 
Sbjct: 204 DLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTLPILFGDK 252


>gi|164422625|ref|XP_958617.2| hypothetical protein NCU09892 [Neurospora crassa OR74A]
 gi|157069749|gb|EAA29381.2| predicted protein [Neurospora crassa OR74A]
          Length = 631

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 83/237 (35%), Positives = 124/237 (52%), Gaps = 8/237 (3%)

Query: 2   RRSKYFLPILQ-ENP--RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R SK ++P      P   DA    H  ++R G + Q   GI+  LPLG++  D V  ++ 
Sbjct: 94  RLSKVWIPSGGFAVPGVEDA----HSKLVRAGFLRQSHAGIFHMLPLGKRVQDKVERLVA 149

Query: 59  EEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +    + A      +  S++ LW  SGR  +   E+ R  DR   A +  PTHEE +T +
Sbjct: 150 KHMEESLAASRVSLSSISSEALWERSGRLPNIAPELFRFPDRKGSAYLLSPTHEEEITYL 209

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY++LP   YQI  KFRDELRPR G++R REF+MKD Y+FD     +  +Y K+
Sbjct: 210 VAQTVRSYKDLPLRLYQITRKFRDELRPRHGLLRGREFIMKDLYTFDTDLTSALDTYEKV 269

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +Y RIF+ + L  +  +A SG +GGDLSHE+ + +  GE  +             
Sbjct: 270 RAAYSRIFNDMKLPVLAAKASSGDMGGDLSHEYHLPSPFGEDNIITCGSCDYIINEE 326



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)

Query: 266 KLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADG-- 307
           +  D+ P+         + +E+GH F+ GT+YS P+ A                G  G  
Sbjct: 474 RKGDNCPQCSSGTLNVQKAMELGHTFHLGTRYSQPLGAKISLPPPSSSEAKPSTGDSGTS 533

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   +QMG +GIG  RV+ AV E   D KG+ WP ++AP+   ++  + +     +  ++
Sbjct: 534 KTVSMQMGCHGIGISRVIGAVAEHLADDKGLNWPVAIAPYTCIVVFAEDNYDDAVEVYKR 593

Query: 368 IYARL--SKVGCDVFWDDMGEQIGSQFAVADLL 398
           I   +       D+  DD  + +  +   ADL+
Sbjct: 594 ILNGIGDQDERLDIILDDRQKSLPWKLKDADLI 626


>gi|331248340|ref|XP_003336794.1| hypothetical protein PGTG_18362 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309315784|gb|EFP92375.1| hypothetical protein PGTG_18362 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 677

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 139/432 (32%), Gaps = 72/432 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVES 83
           + +  MI  +   G Y   P   +  + +     +     G      P  + S  L  E 
Sbjct: 175 LKKGDMIDYYDISGCYILKPASYRIWEIIQRWFDDRIKALGVENAYFPMFVSSRVLEKEK 234

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I+SYR+LP    Q     
Sbjct: 235 DHIEGFAPEVAWVTRAGQSELEEHIAIRPTSETVMYPYYAKWIQSYRDLPLKLNQWNSVV 294

Query: 140 RDELRPR---------FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           R E +              +R+REFL ++ ++  L  E +     ++   Y  ++    L
Sbjct: 295 RWEFKNPPDLSPIDLIEPFIRTREFLWQEGHTAHLHREEADLEVRQILDLYRGVYEE--L 352

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            ++P+                      E + F    +           F           
Sbjct: 353 LAVPV----------------TPGVKSEKEKFAGGLYTTTV-----EGFVPTSGRGIQGA 391

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                    S + N  + D        +    E   ++                      
Sbjct: 392 TSHCLGQNFSKMFNISVEDPSKPVDPNAGTQAEKLFVWQ--------------------- 430

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
                S+G+ + R +  ++    D KG++ P  VA  ++ +I +           +   D
Sbjct: 431 ----NSWGL-STRSIGVMVMVHADDKGLVLPPRVANLQVIVIPVGIVASTGPESRKDLYD 485

Query: 364 ACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E + ARL K G     D   G   G +F   ++ G PL++ +G K ++     +  R 
Sbjct: 486 KSEDLAARLRKAGVLARTDIREGYTPGWKFNSWEMKGIPLRLELGPKDLASQTTLVVRRD 545

Query: 423 TGIREDMSLEEV 434
           TG ++   LE +
Sbjct: 546 TGEKKSYPLETL 557


>gi|302340220|ref|YP_003805426.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301637405|gb|ADK82832.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 562

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 128/227 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    F   L+  P+D +      +LR G I     G+YS+LPLG K ++ +  IIREE
Sbjct: 1   MRYRHLFGKTLRSTPQDVKSEGLSFLLRGGFIRPLGHGLYSYLPLGVKVVEKLRKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+SVP +  AD+W  SGR     + M+R +DR+ +  +  P+HEE   ++ R 
Sbjct: 61  MDRLGGQEVSVPLVNPADIWKRSGREHLIDRAMIRFSDRSGRRYVLSPSHEEAFVELARY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+ P   +Q Q KFRDE R R G++R +EF MKDAYSF  +     + + KMF +
Sbjct: 121 GLRSYRDFPVLLFQFQRKFRDEERVRQGLVRLKEFEMKDAYSFHRSATALNNFFPKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R GL  +   +  G + G+ ++EF++ ++ G+  V      
Sbjct: 181 YERIFSRCGLDILTAESGVGYMRGEKAYEFLLPSNLGDDVVMSCPVC 227



 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R IE+G+IF  G  Y+  M   F+  +GK  Y  MGSYGIG  R++ A+ E+  D +G++
Sbjct: 401 RAIELGNIFKLGDFYARGMELVFREENGKRLYPHMGSYGIGIDRLLGAIAETKRDERGLL 460

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+AP++  L+ I     V R+  E++YA +S+   D   DD  E  G +F  ++L+G
Sbjct: 461 WPPSLAPYRFFLMGIGKGASVRREV-EQLYASISE---DTLIDDRSESPGVKFKDSELMG 516

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            P ++++ +  + + + E+  R    R  + L ++
Sbjct: 517 IPWRIVISASTLEEGRAELYDRRADRRRLVPLADI 551


>gi|312091207|ref|XP_003146898.1| hypothetical protein LOAG_11329 [Loa loa]
 gi|307757937|gb|EFO17171.1| hypothetical protein LOAG_11329 [Loa loa]
          Length = 574

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 150/457 (32%), Gaps = 74/457 (16%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREE 60
           +++K  L + +E    AE  S +++++  MI  +   G Y   P      + +      E
Sbjct: 72  KQTKLGLDVKKEE-NLAEWYS-QIIVKADMIEYYDVSGCYILRPWSFAIWEIIKKWFDTE 129

Query: 61  QNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMT 115
             + G      P   S + L  E      +  E+  +         + +   PT E V+ 
Sbjct: 130 IKKLGVRNCYFPIFVSQNALQREKEHIADFAPEVAWITRAGNSELSEPIAIRPTSETVIY 189

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             +   I+SYR+LP    Q     R E +     +R+REFL ++ ++   T + +++   
Sbjct: 190 PSYAKWIQSYRDLPLRLNQWCNVVRWEFKHPTPFLRTREFLWQEGHTAFQTKQEAENEVF 249

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +   Y +++    L +IP+       G     E     D   T        ++  +P  
Sbjct: 250 IILDLYAKVYTD--LLAIPV-----TKGRKSEKEKFAGGDFTTT--------VEAYVPVN 294

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                   S +           +  D  +     +   +  ++ R I             
Sbjct: 295 GRGIQGATSHHLGQNFSKMFDISFEDPESGAKTFAWQNSWGMTTRTI------------- 341

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                                          A+I    D  G++ P  VAP ++ +I + 
Sbjct: 342 ------------------------------GAMIMIHSDNDGLVLPPRVAPIQVIIIPVG 371

Query: 356 AHDQVCRDA-------CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVG 407
              Q+ +          E+I   L      V  D       G +F   +L G P+++ +G
Sbjct: 372 ITSQMDKQIKQEIFIKAEEIMRILENSRIRVDTDLRDNYSPGWKFNHWELKGVPIRLELG 431

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            K +  S+V    R    +  + ++ +    S     
Sbjct: 432 PKDIKKSQVTCVIRYNRQKSVIPIDSLSARCSELLDE 468


>gi|83774018|dbj|BAE64143.1| unnamed protein product [Aspergillus oryzae]
          Length = 632

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/203 (39%), Positives = 118/203 (58%), Gaps = 1/203 (0%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L++R G + Q   GI+  LPLG +  D +  +I +     GA ++S+ ++ S +LW  SG
Sbjct: 71  LLVRGGFLRQAYSGIFHMLPLGLRVQDKLERLIDKHMRSVGASKVSLSSISSQELWERSG 130

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R    G E+ +  DR +   +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE R
Sbjct: 131 RL-GEGSEVFKFHDRKESRFLLAPTHEEEITTLVGSLAKSYRDLPLRVYQISRKYRDEPR 189

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKD Y+FD T E +  +Y  +  +Y R+F+ L +  +   A+SG +GG
Sbjct: 190 PRQGLLRGREFIMKDLYTFDCTVEEALETYTSVKAAYTRLFNDLKIPYLVAAADSGNMGG 249

Query: 205 DLSHEFIVLADTGETQVFCSKDF 227
           +LSHEF V +  GE  V      
Sbjct: 250 NLSHEFHVPSSKGEDTVISCTSC 272



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 15/177 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFK-------GADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +   +E+GH F+ GT+YS  + A+          ++ +   +QMG +GIG  R++ AV +
Sbjct: 458 TQVAVELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQMGCHGIGVSRMITAVAD 517

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQ 387
           S  D KG+ WP +VAPF++ ++  K  ++      EKIY  L+       DV  DD  +Q
Sbjct: 518 SLADSKGLNWPRAVAPFEVIVVPAKGLEEE----AEKIYDTLTSDPASPVDVILDDRDKQ 573

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASHRFS 443
           +G +   ADL+G+P+ V+VG  +  +  +E++ R L  +RE++ LE++  +      
Sbjct: 574 MGWKLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVPLEQLSTFIRSLLE 630


>gi|326915112|ref|XP_003203865.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Meleagris
            gallopavo]
          Length = 1778

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 134/452 (29%), Gaps = 78/452 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ +  MI  +   G Y   P      + +      E  + G  
Sbjct: 1282 LEAKKEENLAEWFS-QVITKAEMIEYYDVSGCYVLRPWAHAIWEAIKNFFDAEIKKLGVE 1340

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHI 122
                P   S A L  E      +  E+  +         + +   PT E VM   +   +
Sbjct: 1341 NCYFPMFVSQAALEKEKSHIADFAPEVAWVTKSGKTELAEPIAIRPTSETVMYPAYAKWV 1400

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+LP    Q     R E +          FL    + +      +  +Y +   +  
Sbjct: 1401 QSHRDLPIKLNQWCNVVRWEFKHPQP------FLRTREFLWQ-EGHTAFATYEE---AAE 1450

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   L L                       A   E  +          +    T+ +  
Sbjct: 1451 EVMQILDL----------------------YAQVYEDLLAI------PVVKGRKTEKEKF 1482

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +          A                    S R I+     + G  +S     TF
Sbjct: 1483 AGGDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEVTF 1522

Query: 303  KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAH 357
            +     G+  Y    S+GI   R +  +     D  G++ P  VA  ++ +I        
Sbjct: 1523 EDPKKPGEKQYAYQNSWGIT-TRTIGVMTMIHGDNMGLVLPPRVACVQVVIIPCGITNTL 1581

Query: 358  DQVCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +  R+A    C +   RL      V  D       G +F   +L G P+++ VG + + 
Sbjct: 1582 SEEDREALLKKCNEYLKRLLNANVRVRADLRDNYSPGWKFNHWELKGVPVRLEVGPRDMK 1641

Query: 413  DSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +     R TG +   S  E           
Sbjct: 1642 SQQFVAVRRDTGQKLTFSEHEAEEKLKQILEE 1673


>gi|302818920|ref|XP_002991132.1| hypothetical protein SELMODRAFT_132981 [Selaginella moellendorffii]
 gi|300141063|gb|EFJ07778.1| hypothetical protein SELMODRAFT_132981 [Selaginella moellendorffii]
          Length = 528

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/462 (17%), Positives = 161/462 (34%), Gaps = 86/462 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS+ F     +    AE+A +  +  T +I           P G    + V + +  +  
Sbjct: 55  RSQDFSRWYLDVIDAAELADYGPVRGTMVIR----------PYGYAIWEFVQSWLDAKFK 104

Query: 63  RTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   M  P L        E+   + +  E+  +        ++ ++  PT E ++  +
Sbjct: 105 ETGHSNMYFPQLIPYSFIEKETSHVEGFSPELALVTIGGGKELEEKLVVRPTSETMVNHM 164

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+S+R+LP    Q     R E R     +R+ EFL ++ ++   T + ++    +M
Sbjct: 165 FAQWIRSHRDLPLLVNQWANVTRWERR-TKPFIRTLEFLWQEGHTAHATAQEAEEEALRM 223

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y R F      ++   A    +G     E    A                       
Sbjct: 224 IEVY-RTF------AVEQAAMPVIVGRKSRLERFAGA----------------------- 253

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                 +                  HN     +     + +    ++ HI+         
Sbjct: 254 ----TCTYTIEAMMGDRRALQAGTSHNLGQNFARAFETQFTDVNGDLQHIWQ-------- 301

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                             S+G+ + R+V  +I +  D KG++ P  +AP ++ ++ I   
Sbjct: 302 -----------------TSWGM-STRMVGGIIMTHGDDKGLMLPPKLAPIQVVIVPIWKK 343

Query: 358 ---DQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSD 413
               +    A  K+ + +   G  V  D   ++  G +F   +L G P+++ +G K V++
Sbjct: 344 GDEQESVLQAAHKVESLVRAAGIRVKLDTFDQRTPGWKFNHWELKGVPIRIEIGPKDVAN 403

Query: 414 SKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
           + V +  R      G    + +E   +I++   +  + +  L
Sbjct: 404 NSVVVARRDVPGKAGKEFGIFMERSVLIDHLRAKLDDIQSSL 445


>gi|320160470|ref|YP_004173694.1| prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994323|dbj|BAJ63094.1| prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 478

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 144/435 (33%), Gaps = 75/435 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++++LR  +      +G     P G    +N+   + +    TG +  + P       L 
Sbjct: 18  NQIVLRADLADYAPVRGCMVVKPYGWALWENIQQALDKRFKATGHVNAAFPLFIPMSFLE 77

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +     +  ++ ++  PT E ++  ++   I+SYR+LP    Q  
Sbjct: 78  KEKEHVEGFSPELAVVTVGGGETLEEPLVVRPTSETIIGYMYSKWIRSYRDLPILINQWG 137

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E+R R   +R+ EF  ++ ++   T E +     +M  +Y R        +I   
Sbjct: 138 NVVRWEMRTRL-FLRTLEFYWQEGHTAHATREEAIEETMRMLDTYYRF-------AIEEA 189

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A     G     E    A+            M   I +   D   + S  S         
Sbjct: 190 AVPVIPGRKSQTEKFAGAE------------MSMTIEAMMRDTKALQSGTSHFLGQNFAR 237

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A      ++                      +   T++                      
Sbjct: 238 AFDIRFLDQNNELQYAWT-----------TSWGLSTRF---------------------- 264

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLS 373
                   + A+I +  D +G+I P  +AP ++ ++ I   D          +++   L 
Sbjct: 265 --------IGAIIMTHGDDQGLILPPRLAPIQVVIVPIYRDDAERSLVMPVVDRLEQELR 316

Query: 374 KVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDM 429
           +    V  D       G +F   ++ G PL++ VG K V  + V +  R       +  +
Sbjct: 317 EA-FRVHVDRRDGVTPGFKFNDWEMRGVPLRLEVGPKDVEKNSVALARRDRPGKAGKSFV 375

Query: 430 SLEEVINYASHRFSN 444
           S E +    +    +
Sbjct: 376 SQEGLTQTIADTLKD 390


>gi|240144896|ref|ZP_04743497.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203029|gb|EEV01314.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 330

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 11/259 (4%)

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    GL +  +    GP+G  ++ + IVL D        S +  +      N D     
Sbjct: 83  ITEECGLNAGYI----GPVGLKINGDAIVLYDR-------SLENRNNLSCGANEDEYHYK 131

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+   +   A Y   +  +   +     +     +RGIEVG+IF  G KY+  M  T+ 
Sbjct: 132 GLDMQRDVPDAEYHDFAKAYEGGICPKCGKKTIRISRGIEVGNIFQLGDKYTKAMKMTYV 191

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +G+     MG YGIG  R+ AAV E+ HD  G IWP S+AP+++ L  ++A ++  R 
Sbjct: 192 DQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGPIWPKSIAPWQVHLCAVRADNEEVRK 251

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y +L ++G +V +DD     G  F+ ADLLG PL+VIV  + +    VE+  R  
Sbjct: 252 FADDLYEKLQEMGIEVIYDDRTVSAGVMFSDADLLGIPLRVIVSPRNMKQGVVEVASRDK 311

Query: 424 GIREDMSLEEVINYASHRF 442
            ++  + +EE         
Sbjct: 312 TLQTQVKMEEAAEQVKKYL 330


>gi|224064768|ref|XP_002301553.1| predicted protein [Populus trichocarpa]
 gi|222843279|gb|EEE80826.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 142/436 (32%), Gaps = 69/436 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           ++++   MI  +   G Y   P      + + A    E  +        P   S+  L  
Sbjct: 31  EVVVNGEMIEYYDISGCYILRPWSMSIWETMQAFFDVEIKKMKIKNCYFPLFVSSSVLQK 90

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        +  +   PT E VM   F   I+ +R+LP    Q   
Sbjct: 91  EKDHIEGFAPEVAWVTKAGKSDLEVPVAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCN 150

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +RSREFL ++ ++   + + +     ++   Y RI+      +IP+  
Sbjct: 151 VVRWEFSNPTPFIRSREFLWQEGHTAFASKQEADEEVLQILELYRRIYEE--FLAIPV-- 206

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S          E + F    +              I    +        +A
Sbjct: 207 ----IKGKKS----------EMEKFAGGLYTTSVEAFIPNTGRGIQG--ATSHCLGQNFA 250

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              +++ E          + S                                       
Sbjct: 251 KMFEINFENEKGEKGMAWQNSW-------------------------------------- 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSK 374
              + R +  ++    D KG++ P  VA  ++ ++ +   D   Q   DAC      L +
Sbjct: 273 -AYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVVPVPYKDADTQGIFDACAATVDTLCE 331

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     D       G +++  ++ G PL++ +G K +++++V    R    + D+S + 
Sbjct: 332 AGIRAEADFRENYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISRDS 391

Query: 434 VINYASHRFSNNRPVL 449
           ++        + +  L
Sbjct: 392 LMEKVKDMLDDIQQRL 407


>gi|295111084|emb|CBL27834.1| prolyl-tRNA synthetase [Synergistetes bacterium SGP1]
          Length = 479

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 157/459 (34%), Gaps = 89/459 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L +++     AE+A +  +    +I           P G    +NV     +   R
Sbjct: 13  SQWYLDVIKA----AELADYAPVRGCMVIR----------PTGYSIWENVQRYFDDAFKR 58

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
           TG +    P L     L  E+   + +  E   +     +  ++     PT E V+  ++
Sbjct: 59  TGHVNAYFPLLIPNSFLQKEAEHVEGFAPECAMVTHAGGEELEEPFAVRPTSETVIGHMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              I+S+R+LP    Q     R E RPR        FL    + +      +  +  +  
Sbjct: 119 SRWIQSWRDLPVLINQWCNVMRWEKRPRL-------FLRTSEFLWQ-EGHTAHATEQEAR 170

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              LR+          +          +  E  +   TGE                    
Sbjct: 171 EETLRMLE----VYRKV----------MEEELALPVITGEKTA----------------- 199

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                 +     +     E     A+ ++ G   + G  ++   
Sbjct: 200 ---------------------GERFPGAVATYTCEAMMSDAKALQAGTSHFLGQNFARAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  DG+       S+GI + R++ A+I +  D  G++ P  +AP K+ L+ I + D
Sbjct: 239 EIRFQDRDGELATCWTTSWGI-STRLIGAIIMTHSDDDGLVLPPHIAPVKVVLLPI-SKD 296

Query: 359 QVCRD-----ACEKIYARLSKV--GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKF 410
           +   +        ++  +L +   G     D     + G +F      G PL++ +G K 
Sbjct: 297 ERQAEGVLLPMARELSGQLDEALGGLYTAVDTQFHMRPGDRFFTHLQRGVPLRLELGEKD 356

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V    V +  R TG + D+S + ++        + +  L
Sbjct: 357 VQSGTVRVVRRDTGEKADLSRDALVPAVQKLLEDVQSNL 395


>gi|268610123|ref|ZP_06143850.1| prolyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 480

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 130/418 (31%), Gaps = 57/418 (13%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           +  +I   S KG     P G    +N+  I+      TG   + +P              
Sbjct: 28  KAELIEYTSVKGCMVIRPYGYAIWENIQRILDTTFKETGHENVCMP-------------- 73

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
                 M        K       H E                            +E    
Sbjct: 74  ------MFIPESLLQKEK----DHVEGFAPEVA---------------WVTHGGNEKLED 108

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R           F        HSY  +   Y +      +  +     + P     
Sbjct: 109 RLCVRP-----TSETLFCEHYSNIIHSYRDLPKLYNQ-----WVSVVRWEKTTRPFLR-- 156

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S EF+      E     +             +        S+           SD     
Sbjct: 157 SREFLWQ----EGHTIHATAEEAIEETERMLNVYADFCEKSLAMPVVKGKKTESDKFAGA 212

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +     E      + ++ G   YFG  ++      +   + K       S+G+   R++ 
Sbjct: 213 VSTYAIEALMHDGKALQAGTSHYFGDGFAKAFGIEYTDKENKRVNPHQTSWGVT-TRLIG 271

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           AVI +  D  G++ P +VAP ++ ++ I  H +   D   ++  RL K G  V  DD   
Sbjct: 272 AVIMTHGDNSGLVLPPAVAPVQVVIVPIAQHKEGVLDKANELLERLKKAGVRVKLDDTDN 331

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             G +FA  ++ G PL+V +G + + ++K  I  R  G + D SL+E+ +  + +   
Sbjct: 332 SPGWKFAEYEMKGVPLRVEIGPRDIEENKCIIASRWNGEKADFSLDELESAVAQKLQE 389


>gi|125775071|ref|XP_001358787.1| GA18849 [Drosophila pseudoobscura pseudoobscura]
 gi|54638528|gb|EAL27930.1| GA18849 [Drosophila pseudoobscura pseudoobscura]
          Length = 1725

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 138/448 (30%), Gaps = 76/448 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ +  MI  +   G Y            +      E  R G  E 
Sbjct: 1229 EATKEENLPDWYSQVITKGEMIEYYDVSGCYILRHWSFAIWKFIKQWFDAEITRLGVKEC 1288

Query: 70   SVP-TLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P  +  A L  E      +  E+  +    D    + +   PT E VM   +   I+S
Sbjct: 1289 YFPIFVSKAVLEKEKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWIQS 1348

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            YR+LP    Q     R E +          FL    + +    +    ++     +   +
Sbjct: 1349 YRDLPLRLNQWNNVVRWEFKHPQP------FLRTREFLW----QEGHTAFASQEEAVKEV 1398

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                              +  +       +    T+ +    
Sbjct: 1399 LDMLDL----------------------------YALVYTHLLAIPVVKGRKTEKEKFAG 1430

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      ++ 
Sbjct: 1431 GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIVYED 1470

Query: 305  AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQ 359
             +  +  YV   S+GI   R +  +I    D +G++ P +VA  +  ++     +   D+
Sbjct: 1471 PETQQKKYVFQNSWGIT-TRTIGVMIMVHADNQGLVLPPNVACIQAIVVPCGITVNTTDE 1529

Query: 360  V---CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  DAC+K+   L   G     D       G +F   +L G PL++ VG K +   +
Sbjct: 1530 ERAQLLDACKKLEQTLVGAGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQ 1589

Query: 416  VEIKHRLTGIREDMSLEEVINYASHRFS 443
            +    R TG +  + L +V    S    
Sbjct: 1590 LVAVRRDTGEKITLPLADVEKKISALLE 1617


>gi|326428221|gb|EGD73791.1| bifunctional aminoacyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 1489

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 144/450 (32%), Gaps = 78/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++ +      +++ ++ +I  +   G +  LP      + +         R G    
Sbjct: 992  EAKKEEDFPEWYSQVLTKSELIEYYDVSGCFVLLPWAYFMWEQIQEFFNGHLRRLGVSNC 1051

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P   + D L  E      +  E+  +    D    K +   PT E +M   +   ++S
Sbjct: 1052 YFPMFVTMDRLQKEKDHIADFAPEVAWVTHAGDSPMEKPIAIRPTSETIMYPYYAKKVQS 1111

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++       ++            +
Sbjct: 1112 HRDLPIRMNQWSNVVRWEFKQATPFLRTREFLWQEGHTAYANQADAEAE----------V 1161

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +  L L    +  +   I                             IP   T+      
Sbjct: 1162 YEILDL-YRAIYEDLLAI---------------------------PVIPGRKTE------ 1187

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       +A        + F         + RGI+     + G  +S      ++ 
Sbjct: 1188 --------KEKFAGGVYTTTVEGFIPQ------TGRGIQGATSHHLGQNFSKMFEIKYQD 1233

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINI------- 354
                 KD +    S+G+   R +  +I    D K G++ P  VA  ++++I         
Sbjct: 1234 PQDASKDCFAYQNSWGLT-TRTLGVMIMVHSDNKVGLVLPPRVACIQVAVIPTGLSAKLG 1292

Query: 355  KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                         I   L + G     D D+      ++   +L G PL++ VG + +  
Sbjct: 1293 DDKRDKLLAEARAIEDELKRAGIRAHADLDLHVSPPWKYNHYELKGVPLRIEVGPRDMES 1352

Query: 414  SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++V    R TG +  ++ + +         
Sbjct: 1353 NQVVAVVRCTGDKLTLARDTLATAIPATLK 1382


>gi|308160413|gb|EFO62904.1| Prolyl-tRNA synthetase [Giardia lamblia P15]
          Length = 542

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 141/429 (32%), Gaps = 76/429 (17%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGK 91
               KG   + P G    + +  +  EE  + G  +   PT+       + G     +  
Sbjct: 65  RYPVKGCVVFRPYGFFMENAIMKLCEEEYAKIGISQALFPTVIPESFLKKEGDHIKGFEA 124

Query: 92  EMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E   +        ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +   
Sbjct: 125 ECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTK 184

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            ++R RE                                                     
Sbjct: 185 PLIRVREIHWN------------------------------------------------- 195

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      T E  V    D+             D I  + +  +         D      
Sbjct: 196 -EAHCCHATAEDAVSQLSDYW---------KVIDTIFSDELCFKGQKLRRVCWDKFAGAD 245

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +  + +      R ++   I   G ++S      +     ++ +  +   GI + RV+A 
Sbjct: 246 YSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANRANENVHPYLTCAGI-STRVLAC 304

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAH-------DQVCRDACEKIYARLS-KVGCDV 379
            +    D  G++ P  +AP  + +I I          D+   +   +I   L  K+G  V
Sbjct: 305 ALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDRQVLEKVNEIADTLKSKLGLRV 364

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVIN 436
             DD     +G +    +L G PL++ +G + +++++  +  R  G   +  + + EVI 
Sbjct: 365 SVDDDFSRSMGDKLYYYELKGVPLRIEIGQRDLTNNQCIVVPRDVGKDQKRVIPITEVIK 424

Query: 437 YASHRFSNN 445
            +SH   N+
Sbjct: 425 VSSHTTENH 433


>gi|197120447|ref|YP_002132398.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|196170296|gb|ACG71269.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 510

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 140/437 (32%), Gaps = 86/437 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    ++V  ++      TG +    P      L   E+   + + KE   +
Sbjct: 39  GCMVIKPWGYALWEHVQRVLDGMFKATGHVNAYFPLFIPLSLLEKEAAHVEGFAKECAVV 98

Query: 97  AD--------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++ ++  PT E ++ + F   ++SYR+LP    Q     R E
Sbjct: 99  THHRLEARDGKLVPVGELEEPLVVRPTSETIIGESFARWVQSYRDLPLLINQWANVVRWE 158

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +R R   +R+ EFL ++ ++   T   +     +M    LRI+ R               
Sbjct: 159 MRTRM-FLRTAEFLWQEGHTAHATEREAIDETMQM----LRIYAR--------------- 198

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                              F  +      +  E T  +                      
Sbjct: 199 -------------------FAEEWMALPVVQGEKTASERFPGAVRTYCIEAM-------- 231

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                            + ++ G   + G  ++      F+  +G   +    S+G+ + 
Sbjct: 232 -------------MQDRKALQAGTSHFLGQNFAKASGIQFQDENGTLTHAWTTSWGL-ST 277

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK----- 374
           R++ A+I +  D  G++ P  +AP ++ +I +    +V       C ++   L       
Sbjct: 278 RMIGAMIMTHGDDDGMVCPPRLAPQQVVIIPVIQKPEVREQVLAWCAELKRELEAQSYAG 337

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLE 432
               V  D    Q   +       G P+++ VG K +    V +  + R    ++ +   
Sbjct: 338 APVRVHLDARDVQGAKKSWEWIKKGAPIRLEVGPKDIEKGAVFMGRRDRKPREKQSVPRG 397

Query: 433 EVINYASHRFSNNRPVL 449
           E++   +      +  L
Sbjct: 398 ELVAGVAALLQEIQDAL 414


>gi|302894055|ref|XP_003045908.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726835|gb|EEU40195.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 555

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 144/435 (33%), Gaps = 72/435 (16%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADL 79
            +++L+  M+  ++   G +   PL     + +    +      G  E + P  L S  L
Sbjct: 63  QEVVLKAEMVEYYTEISGFFVLRPLAMHIWNEIRKWFQAHIEEMGVDETNFPMFLSSKSL 122

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 123 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 182

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 183 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGVEVLEILELYAGVYEK--LLAVPV 240

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +         ++   I    S        
Sbjct: 241 ----------------VRGRKTENEKFAGGYYTTTVEGYIPSNGRGIQGATSHALGQNFS 284

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 V + +   S     + S         +   T+                      
Sbjct: 285 KMFDITVEDPQNKGSHLHVWQNS---------WGLSTR---------------------- 313

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKI 368
              IG M ++        D KG++ P  VA  +  +I +  +     +A        ++I
Sbjct: 314 --VIGVMVMIHG------DDKGLVLPPRVAKTQAIIIPVGINKNTTPEARKQHEEQVDEI 365

Query: 369 YARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            A L K G  V  D         +F   +L G P+++  G K  +   V    R TG + 
Sbjct: 366 RATLKKAGVRVESDWRDGYTPAWKFNDWELKGVPVRLEFGPKDAAKEVVSYARRDTGEKG 425

Query: 428 DMSLEEVINYASHRF 442
            + + ++        
Sbjct: 426 TIPIADIATKIPELL 440


>gi|315049859|ref|XP_003174304.1| prolyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311342271|gb|EFR01474.1| prolyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 631

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 123/228 (53%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +++P          + S+ L++R G + Q   G++  LPLG +  + +  +I +  
Sbjct: 41  RASSFWVPSGGIAESKNGVDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDKHM 100

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  A ++S+ +L S  LW +SGR  +   E+ R  DR     +  PTHEE +T +    
Sbjct: 101 RKLSASKLSLSSLSSQALWKKSGRLHNDDSEVFRFVDRKKTPFLLAPTHEEEITTLVSGL 160

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  +Y
Sbjct: 161 IKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEGEAIKTYNTVKDAY 220

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           + +F  L +  +   A SG +GG+LSHEF   +  GE  V        
Sbjct: 221 ISLFKELKIPYVVASASSGNMGGNLSHEFHFPSPKGEDTVVSCSKCEY 268



 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 14/190 (7%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK---------GADGK--DHYVQMGS 316
             S         + IE+ H F+ GT+YS  + A            G  GK     +QMG 
Sbjct: 442 CPSCGSPSLKIDQSIELAHTFHLGTRYSDVLQANVSINPAILANAGQKGKQEPVPIQMGC 501

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +GIG  R+++AV +   D KG+ WP ++APF+++++      +   +    +  R ++  
Sbjct: 502 HGIGVSRMISAVSDILADEKGLNWPQAIAPFQVAVVP-GKGLEKEAELVYDVVTRNTQQP 560

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGI-REDMSLEEV 434
            D   DD  +    +   ADL+G+P+ + VG    S   KVE++ R  G  R  +SLEEV
Sbjct: 561 IDTILDDRKKDFAWKLRDADLIGYPVILAVGKNSWSAGNKVEVQCRRLGNLRTKISLEEV 620

Query: 435 INYASHRFSN 444
               S   S 
Sbjct: 621 PELVSSLLSK 630


>gi|116180206|ref|XP_001219952.1| hypothetical protein CHGG_00731 [Chaetomium globosum CBS 148.51]
 gi|88185028|gb|EAQ92496.1| hypothetical protein CHGG_00731 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 12/233 (5%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ + P         E A H  ++R G + Q + G++  LPLG +  D V  ++    
Sbjct: 8   RLSRVWFPSGGIAASGVEDA-HAKLIRAGFLRQSNAGMFHMLPLGNRVQDKVERLVASRM 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+         LW +SGR D+   E+ R +DR D   +  PTHEE +T +    
Sbjct: 67  -----EELL------ESLWEKSGRLDNVASELFRFSDRRDVPYLLAPTHEEEITTLAARS 115

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP   YQI  K+RDE RPR G++R REF+MKD Y+FD + + +  +YN +  +Y
Sbjct: 116 VKSYKELPLRLYQITRKYRDEFRPRHGLLRGREFIMKDLYTFDSSVDSALETYNDVRAAY 175

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +IF  + L  +  +A SG +GGDLSHE+ +    GE +V             
Sbjct: 176 NQIFSDMKLPVLSAKASSGDMGGDLSHEYHLPTPLGEDRVISCSSCNYVVNEE 228



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGA 321
                 +         +R +E+GH F+ GT+YS P+ A        +   +QMG YGIG 
Sbjct: 376 RTGDKCNQCSSGHLQVSRAMELGHTFFLGTRYSQPLHAMATIPPATQPTPLQMGCYGIGI 435

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS------KV 375
            R++ A  E   D  G+ WP ++AP+   +I  K  D+       ++Y ++       + 
Sbjct: 436 SRIIGAAAEHLADQTGLNWPAAIAPYSCVVIPGKDADEGD---AVQVYQQIEGIVGPERR 492

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             DV  DD  + +  + A ADL+GFP+ V++G ++ +  +VE++ R  G+++ + + ++
Sbjct: 493 LVDVVLDDRAKSLPWKMADADLIGFPVIVLLGREWRAARRVEVQCRRLGVKQAVEIADL 551


>gi|149918430|ref|ZP_01906920.1| prolyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
 gi|149820730|gb|EDM80140.1| prolyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
          Length = 517

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 155/450 (34%), Gaps = 87/450 (19%)

Query: 23  HKLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           ++ ++R G + + +K   G     P G    + +   +      TG      P L     
Sbjct: 37  YQDVVRFGELAEPAKVVKGCMVIRPHGYAIWEKIQRDLDARFKNTGHRNAYFPLLVPQSF 96

Query: 80  -WVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              E+   + +  E+  +        ++  +  PT E ++   F   I S+R+LP    Q
Sbjct: 97  IMKEAEHIEGFAPELAVVTHAGGQELEEPYVIRPTSETIIGHFFAKWIDSHRDLPLKINQ 156

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                R ELR R   +R+ EFL ++ ++   T E +     +M   Y             
Sbjct: 157 WANVMRWELRTRM-FLRTTEFLWQEGHTAHATHEEAIEETLQMLHVY------------- 202

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                    GD + E + +  T   +    +               D  +L +       
Sbjct: 203 ---------GDFAEEVLAVPVTRGIKTASERFAGALETYCIEAWMQDGKALQAGTSH--- 250

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                                       ++G    FG  + +      +   G   +V  
Sbjct: 251 ----------------------------DLGQ--NFGKAFDVKF----QNEAGDLEHVWQ 276

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYAR 371
            S+G+ + R++  ++ +  D  G++ P  VAP   ++I I       +   +A E++  +
Sbjct: 277 TSWGV-STRLIGGLVMTHSDDDGLVLPPRVAPIHAAIIPIFRKAHEKERVMEAAERLKEQ 335

Query: 372 LSKVGC-----------DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           LS +             +V  DD   + G++F   +  G P+++ +G K +   +V +K 
Sbjct: 336 LSAIDIAPERARYRDFLEVVIDDRDMRPGAKFYDWERRGVPMRIELGPKDLDKGQVCMKM 395

Query: 421 RLT----GIREDMSLEEVINYASHRFSNNR 446
           R+       ++ +   E +     R  + +
Sbjct: 396 RVDTPACSGKQFLPEAEFLGSVRQRLLDYQ 425


>gi|14590578|ref|NP_142646.1| threonyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|8928366|sp|O58430|SYT_PYRHO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3257107|dbj|BAA29790.1| 625aa long hypothetical threonyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 625

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 157/449 (34%), Gaps = 52/449 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    + E    KLML   ++        G   + P G+     +   + E+    G
Sbjct: 194 EISKSRIAEKEPPHVKLMLEHELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVTEKVIEYG 253

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +  +
Sbjct: 254 AMEVETPVMYDFEHPALEKYLNRFPARQ----YIVLSGDKKYFLRFAACFGQFLISKDAV 309

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SYR+LP   Y++    FR E R    G+ R R F M D ++     E +K  + K F  
Sbjct: 310 ISYRHLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDLEQAKDEFKKQFKL 369

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                  ++ V     E                   +  
Sbjct: 370 SMEVLKGVGLTP---------------EDYEVAIRFTED--------FWKENRDFIVELV 406

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            II    ++E W   +            D+L +   +S   I+V +   FG KY      
Sbjct: 407 KIIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFGIKY------ 460

Query: 301 TFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINI 354
                +G++ Y  +   S      RV+ A++E       +GK  + P  ++P ++ +I +
Sbjct: 461 --YDENGEEKYPLILHCSPSGAIERVMYAILEKQAKLMQEGKKPMLPLWLSPIQVRVIPV 518

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D    I  +L      V  DD  E++  +   A+    P  V+VG+K     
Sbjct: 519 ---SEEYLDYALYIAGKLEGARIRVDVDDEDERLNKKIRRAEKEWIPYIVVVGAKEKESG 575

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + ++ R  G + +  LEE+I     +  
Sbjct: 576 TITVRRREDGKQYETRLEELIKEIKEKVE 604


>gi|289616456|emb|CBI56771.1| unnamed protein product [Sordaria macrospora]
          Length = 542

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 1/208 (0%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           H  ++R G + Q   GI+  LPLG++  D V  ++ +    + A      +  S++ LW 
Sbjct: 28  HSKLIRAGFLRQSHAGIFHMLPLGKRVQDKVERLVAKHMEESLAASRVSLSSISSEALWE 87

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SGR  +   E+ R  DR   A +  PTHEE +T++    ++SY++LP   YQI  KFRD
Sbjct: 88  RSGRLQNIAPELFRFLDRKGGAYLLSPTHEEEITNLVAQTVRSYKDLPLRLYQITRKFRD 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           ELRPR G++R REF MKD Y+FD     +  +Y K+  +Y RIF+ + L  +  +A SG 
Sbjct: 148 ELRPRHGLLRGREFTMKDLYTFDTDLRSALDTYEKVRGAYSRIFNDMKLPVLAAKASSGD 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMD 229
           +GGDLSHE+ + +  GE  V        
Sbjct: 208 MGGDLSHEYHLPSPFGEDSVITCGSCDY 235



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 266 KLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFK-------------GADG-- 307
           +  D  P+         + +E+GH F+ GT+YS P++A                G  G  
Sbjct: 387 RTGDDCPQCSSGTLNVQKAMELGHTFHLGTRYSEPLNAKISLPPPSPNEAKTSPGGSGTS 446

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   +QMG +GIG  RV+ AV E   D KG+ WP ++AP+   ++  + H     +  ++
Sbjct: 447 KTVSMQMGCHGIGISRVMGAVAEHLADDKGLNWPVAIAPYTCVVVFAEDHYNDAVEVYKR 506

Query: 368 IYA--RLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           I           D+  DD  + +  +   A LL
Sbjct: 507 ILDGSGDQDERLDIILDDRQKSLPWKLKDATLL 539


>gi|114152217|sp|Q98R27|SYP_MYCPU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 476

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 145/413 (35%), Gaps = 68/413 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P      +N+     +     G   + +P L    L   E    + +  E+  
Sbjct: 34  KGTLIFKPNSYGIWENIQLQFNKILKAKGIKNVYLPLLIPESLMKAEFEHIEGFAPELAT 93

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           L         + +   PT E +    F++ I+SY++LP  + Q     R E +     +R
Sbjct: 94  LTKVGSKNLSENIYLRPTSEVLFQKFFKAEIESYKDLPKIYNQWANVIRWE-KTTNPFLR 152

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           S EFL ++ +S     E +  +         R F R  LK+                   
Sbjct: 153 STEFLWQEGHSSH---ESAIEA---------RKFTREMLKTYC----------------- 183

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F  K      I  + T  +      S                        
Sbjct: 184 ---------KFLRKFLAIPTIMGKKTPREKFSGAYSTYTLEAM----------------- 217

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G   Y    +S      FK ++ K  +V   S+G+ + R++ A+I +
Sbjct: 218 ----MKDGKALQSGTTHYLAQNFSEAYDVNFKDSENKKQFVYQTSWGL-STRLIGAIIMT 272

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +GII P  VAP +I ++               ++   L K    V  D   + +G 
Sbjct: 273 HGDNRGIIIPPFVAPCQIDILAFNPRRSAEIEKFVNQVEKILKK-PFRVNVDRSDKTLGF 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + +++ G PL++ +G +   +++V +  R T  ++ +S+ +++  +     
Sbjct: 332 KASQSEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIVKVSRETLQ 384


>gi|225437777|ref|XP_002281375.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297744088|emb|CBI37058.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 129/429 (30%), Gaps = 69/429 (16%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVESGRYDS 88
           MI  +   G Y   P      + +      E  +        P  +    L  E    + 
Sbjct: 57  MIEYYDISGCYILRPWTMAVWETMQTFFDAEIKKMKIKNCYFPLFVSPGVLQKEKDHIEG 116

Query: 89  YGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +        +  +   PT E VM   +   I+ +R+LP    Q     R E  
Sbjct: 117 FAPEVAWVTKSGQSDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLRLNQWCNVVRWEFS 176

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +RSREFL ++ ++   T E +     ++   Y RI+                I G
Sbjct: 177 HPTPFIRSREFLWQEGHTAFATKEEADKEVLEILELYRRIYEE--------YLAIPVIKG 228

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S          E + F    +              I    S                N
Sbjct: 229 KKS----------EMEKFAGGFYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFDITFEN 278

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           EK   ++      +                                          + R 
Sbjct: 279 EKGEKAMVWQNSWA-----------------------------------------YSTRT 297

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFW 381
           +  ++    D KG++ P  VA  +I ++ +   D   Q   DAC+     L++ G     
Sbjct: 298 IGVMVMVHGDDKGLVMPPKVASVQIIVVPVPFKDADTQAIFDACDATVNTLNEAGFRAEA 357

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +++  ++ G PL++ +G K +++ +     R    + D+ +  ++     
Sbjct: 358 DLRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQARAVRRDNSAKIDIPIVNLVEQVKD 417

Query: 441 RFSNNRPVL 449
              N +  L
Sbjct: 418 MLDNIQQNL 426


>gi|71991346|ref|NP_001022778.1| Prolyl tRNA Synthetase family member (prs-1) [Caenorhabditis
           elegans]
 gi|51988138|gb|AAU20840.1| Prolyl trna synthetase protein 1, isoform b [Caenorhabditis
           elegans]
          Length = 454

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/404 (15%), Positives = 134/404 (33%), Gaps = 71/404 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  MI  +   G Y   P      +++         + G      P  + +A L  
Sbjct: 105 EVITKAEMIEYYDVSGCYVLRPWSFAVWESIQEWFDSGIKKLGVKNCYFPMFVSNAALER 164

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +         + +   PT E VM   ++  ++S+R+LP    Q   
Sbjct: 165 EKTHIADFAPEVAWVTRAGNSEMAEPIAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCN 224

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++    P  ++            +F  L L    +  
Sbjct: 225 VVRWEFKHPTPFLRTREFLWQEGHTAFANPADAEK----------EVFQILDL-YAGVYT 273

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +   I                             +    ++ +     +           
Sbjct: 274 DLLAI---------------------------PVVKGRKSEKEKFAGGDFTTTVEAYVAC 306

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMG 315
                                 RGI+     + G  +S     +++    +G+  +    
Sbjct: 307 NG--------------------RGIQGATSHHLGQNFSKMFDISYEDPAKEGERAFAWQN 346

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARL 372
           S+G+ + R + A++    D KG++ P  VA  ++ ++ +       Q   DA +K+   L
Sbjct: 347 SWGL-STRTIGAMVMIHGDDKGLVLPPRVAAVQVIVVPVGFKTENKQSLFDAVDKVTKDL 405

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              G     D       G +F   +L G P++  VG   ++ ++
Sbjct: 406 VADGVKAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQ 449


>gi|167589833|ref|ZP_02382221.1| prolyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 382

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 188/447 (42%), Gaps = 72/447 (16%)

Query: 1   MRRSKYFLP--ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M+ S+ F      +++    E+    L  +    HQ + G+YSW+ LG +A   V  ++R
Sbjct: 1   MKFSQQFFSNSFFEQDNAKLELTD--LARKACFFHQDAAGLYSWMSLGLRAQRCVERVVR 58

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E +R G  E+ +  LQ ADLW +SGR D YG E++RL +R  +    G T EE+  ++ 
Sbjct: 59  DEMDRAGFCEVQMSLLQDADLWRQSGRLDIYGDELMRLTNRAGRLFCLGATCEELAANMV 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+H     +L    YQ   K+RDELR R G++R+REF+MKDAY+F  T +G++ +Y  + 
Sbjct: 119 RTHYNRT-DLSLGLYQFGNKYRDELRTRGGLVRAREFIMKDAYAFHATDDGARAAYETVR 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y RIF RLGL +I    ++G IGG  S EF V+++ GE +    +      I      
Sbjct: 178 DAYRRIFGRLGLDAIAKSGDNGEIGGRSSEEFHVVSELGEDEADGRRSLECAHIFDLGDR 237

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +  ++                  V+ +  F  +       +R               L M
Sbjct: 238 YSKVLG----------------LVNAKGEFVRMGCFGVGISR---------------LVM 266

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIK 355
               +  DG+  +   GS       VV  VI+                +    IS++   
Sbjct: 267 LLLDRQRDGRGFW---GSDAFNTFDVVLTVIDWERQACQDAAQRLQRDLQAAGISVLV-- 321

Query: 356 AHDQVCRDACEKIY-ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             D     A +K+  A L      V                         +V  K ++  
Sbjct: 322 --DDRVVQAGKKLADAELIACRQRV-------------------------VVSRKAIASG 354

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
           + E   R T   E +S E++  + + R
Sbjct: 355 RFEWMDRRTLACESVSAEDLAGHCARR 381


>gi|297817558|ref|XP_002876662.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322500|gb|EFH52921.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 522

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 130/429 (30%), Gaps = 69/429 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVESGR 85
           +  MI  +   G Y   P      + +      E  +        P  +  A L  E   
Sbjct: 59  KQDMIEYYDISGCYILRPWSMAIWEIMQIFFDAEIKKMKVKNCYFPLFVSPAVLEKEKDH 118

Query: 86  YDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +           +   PT E VM   +   I+ +R+LP    Q     R 
Sbjct: 119 IEGFAPEVAWVTKSGKSDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRW 178

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +RSREFL ++ ++   T   +     ++   Y RI+     + + +    G 
Sbjct: 179 EFSNPTPFIRSREFLWQEGHTAFATKAEADEEVLQILELYRRIYE----EYLAVPVVKGM 234

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                           E + F    +              +    S             +
Sbjct: 235 --------------KSENEKFAGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAKMFEIN 280

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             NEK   ++      +     +G                                    
Sbjct: 281 YENEKAETAMVWQNSWAYSTRTIG------------------------------------ 304

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCD 378
                 +I +  D KG++ P  VA  ++ +I +   D   Q   DAC    + L + G  
Sbjct: 305 -----VMIMTHGDDKGLVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIR 359

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              D       G +++  ++ G PL++ +G + + + +V    R  G++ED+    ++  
Sbjct: 360 AEEDLRDNYSPGWKYSDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDIPRGSLVEN 419

Query: 438 ASHRFSNNR 446
                   +
Sbjct: 420 VKELLEKIQ 428


>gi|322789351|gb|EFZ14663.1| hypothetical protein SINV_09736 [Solenopsis invicta]
          Length = 1422

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 146/439 (33%), Gaps = 74/439 (16%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ ++GMI  +   G Y   P        +   I +E    G  E   P  +  + L  
Sbjct: 938  QVITKSGMIEYYDVSGCYILRPWTFSIWKVIKEYIDDEIKSMGVEECYFPIFVTRSVLEK 997

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E    + +  E+  +    +    + +   PT E +M   +   ++S   LP    Q   
Sbjct: 998  EKAHVEDFAPEVAWVTKYGENDLAEPIAIRPTSETIMYPAYAKWLRSDTELPLRLNQWNN 1057

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++   T   ++    ++   Y R++    L ++P+  
Sbjct: 1058 VVRWEFKDPKPFLRTREFLWQEGHTAFATKLEAEQEVLQILDMYARVYE--NLLAVPV-- 1113

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                          V     E + F                       +           
Sbjct: 1114 --------------VRGRKTEKEKF--------------------AGGDYTTTVEAFIST 1139

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                +             ++    +E                  ++ + G      + + 
Sbjct: 1140 NGRAIQGATSHHLGQNFSKMFNIQVEGKTNEK---------MFVYQNSWG------LTTR 1184

Query: 318  GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYA 370
             IG M ++        D +G++ P +VAP +I +I         ++        C K+  
Sbjct: 1185 TIGVMIMI------HGDDQGLVLPPNVAPIQIVVIPCGIAASMSESKKHELLTECSKLVE 1238

Query: 371  RLSKVG-CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            RLSK G   V  D       G +F   +L G P+++ +G + +  ++V +  R T  R  
Sbjct: 1239 RLSKEGKFRVKADFRENRTPGWRFNHWELKGVPIRIELGPRDLEKNQVTLVRRDTFQRIA 1298

Query: 429  MSLEEVINYASHRFSNNRP 447
             + + V+   +    N + 
Sbjct: 1299 GNKDNVVQLVASMLKNMQE 1317


>gi|315928700|gb|EFV07980.1| Proline-tRNA ligase [Campylobacter jejuni subsp. jejuni 305]
          Length = 347

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E         K   ++GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R+
Sbjct: 170 EGDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRL 229

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +A  IE++HD KG IW  ++APF + +I     D+   +   K+Y  L+ +G +V  DD 
Sbjct: 230 LAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDR 289

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            E+ G +    +L+GFP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 290 NERFGVKMNDFELMGFPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 346


>gi|320164647|gb|EFW41546.1| glutamyl-prolyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 1526

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 138/428 (32%), Gaps = 77/428 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
            + ++R  MI  +   G Y   P      D++      E    G      P   S   L  
Sbjct: 1045 QTIVRAEMIEYYDISGCYILRPWACSVWDHIRDFFDREIKLLGVENAYFPMFVSKSALEK 1104

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E+     +  E+  +         + +   PT E +M   F   I+S+R+LP    Q   
Sbjct: 1105 EADHIADFAPEVAWVTKSGQSDLAEPIALRPTSETIMYPSFAKWIRSHRDLPLKINQWAN 1164

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++   T   +     ++   Y R++            
Sbjct: 1165 VVRWEFKNPTPFLRTREFLWQEGHTAYETKPEADKEVLQILELYRRVYEE--------YL 1216

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCS---KDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                I G  S          E + F        ++  IPS         S N        
Sbjct: 1217 AVPVIKGKKS----------EKEKFAGGLYTTTVEAIIPSTGRGVQGATSHNLGQNFSKM 1266

Query: 255  PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                  D                  R  +  H++                + G      +
Sbjct: 1267 FDILIEDN----------------DRPGQKKHVWQ--------------NSWG------L 1290

Query: 315  GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEK 367
             +  IG M ++        D KG++ P  VA  +  ++         +A         ++
Sbjct: 1291 TTRTIGVMIMLHG------DNKGLVLPPRVASLQAVIVPCGITASLSEADRAALMAYGKQ 1344

Query: 368  IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L   G  V +DD      G +F   +L G PL++ VG + + + ++    R TG +
Sbjct: 1345 VEDALRAGGIRVKFDDRDNYTPGYKFNHWELRGVPLRIEVGPRDMKNKQIVAVRRDTGEK 1404

Query: 427  EDMSLEEV 434
               S++ +
Sbjct: 1405 TSHSVDNI 1412


>gi|327293800|ref|XP_003231596.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466224|gb|EGD91677.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 631

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 121/228 (53%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +++P          + S+ L++R G + Q   G++  LPLG +  + +  +I +  
Sbjct: 41  RASSFWIPSGGIAESKNGVDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDKYM 100

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  A ++S+ +L S  LW +SGR      E+ R  DR     +  PTHEE +T +    
Sbjct: 101 RKLSASKLSLSSLSSQALWKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVSGL 160

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  +Y
Sbjct: 161 IKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKEAY 220

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
             +F  L L  +   A SG +GG+LSHEF   +  GE  +        
Sbjct: 221 SSLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKGEDTIVSCSKCEY 268



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 17/193 (8%)

Query: 268 FDSLPENKRVSARG---IEVGHIFYFGTKYSLPMSATFK---------GADGKDHY--VQ 313
            D  P   + + +    IE+ H F+ GT+YS  + A            G  GK     +Q
Sbjct: 439 GDECPNCGKPALKTDQSIELAHTFHLGTRYSEVLQANVTINPAILAGAGQKGKPEPVPIQ 498

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG +GIG  R+++AV +   D KG+ WP ++APF++ ++      +   +    I  + +
Sbjct: 499 MGCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVVVVP-GKGLEKEGELVYDIVTQKT 557

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSL 431
           K   D   DD  +    +   AD++G+P+ + VG     + +KVE++ R  G  R  +SL
Sbjct: 558 KQPIDTILDDRKKDFAWKLRDADIIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKVSL 617

Query: 432 EEVINYASHRFSN 444
           EEV  + S   S 
Sbjct: 618 EEVPEFVSSLLSK 630


>gi|149246389|ref|XP_001527664.1| prolyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146447618|gb|EDK42006.1| prolyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 557

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K +   L +   D ++ +H+L+ + G+I     G+  W   G    D +N I+RE  
Sbjct: 4   RVPKLYCHQLGKFKTDIQVPTHELLAKLGIISYPHSGLVHWGKTGLLIQDKINGIVRENL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +  L   +LW+++GR+     ++ +L    +   +  PT EE +T+  +  
Sbjct: 64  DHLGYEELKLSLLSHKNLWLQTGRWHQ--PDLFKLQ---NDEYLLAPTAEEEITEYVKRS 118

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SY++LP  +YQI  KFR E RPR G++R REFLMKDAYSFD+    +  +Y  M  +Y
Sbjct: 119 IQSYKHLPVGYYQINEKFRAEKRPRGGLLRGREFLMKDAYSFDIDETSALKTYESMVNAY 178

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             IF  +G+  +  +A+SG IGGDLSHE+ +L   GE  VF     
Sbjct: 179 HNIFREIGVPYVKAQADSGDIGGDLSHEWHLLNQNGEDTVFTCDSC 224



 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 17/201 (8%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           MD  + S +   D  I+  +     T            ++     E     +  IE+GH 
Sbjct: 317 MDARLNSRSNFPDFPINFTNKSMITTLTEVPIVLARAGEVCGECEEGHLQESNAIEIGHT 376

Query: 288 FYFGTKYSLPMSATFK---GADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           FY G KYS P++ T +     +G   +  +V+MG YGIG  R++AAV E + D +G+ WP
Sbjct: 377 FYLGEKYSKPLNLTVEVPTNDNGNTLESRFVKMGCYGIGISRIIAAVAEINRDDRGLRWP 436

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            S+AP++ ++I   A         E + ++L ++ C    D   E+ G +F  +  +G P
Sbjct: 437 ASIAPWEATIITDDASK------VEAVESQLMQIDCR--LDGRDERFGYKFKASTTMGIP 488

Query: 402 LQVIVGSKFVSDSKVEIKHRL 422
           L +++G  F     VEI+ R 
Sbjct: 489 LIIVLGKSF---PHVEIEIRG 506


>gi|229819712|ref|YP_002881238.1| tRNA synthetase class II (G H P and S) [Beutenbergia cavernae DSM
           12333]
 gi|229565625|gb|ACQ79476.1| tRNA synthetase class II (G H P and S) [Beutenbergia cavernae DSM
           12333]
          Length = 409

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 155/434 (35%), Gaps = 40/434 (9%)

Query: 21  ASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R  G+     +   G+  WLP G      + A   E+   +G   +  P L  
Sbjct: 3   IDHRRLGRDLGLFATSAEVGAGLPLWLPDGAVIRGELEAFSLEQALASGCRRVYTPVLAK 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             L+  SG +  +  EM        ++++  P +    T +F +  +SYR+LPF   ++ 
Sbjct: 63  RSLFERSGHWAKFSGEMFPEMPLGGESLVLRPVNCPHHTQVFAAEGRSYRDLPFRLAEVG 122

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR EL     G+ R R+  + DA+SF   P+           +    +  LG+     
Sbjct: 123 SMFRSELSGVVGGLSRVRQINLDDAHSFCA-PDQVADEVALALRAIRHCYDVLGIDVAYY 181

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           R      G   S+     A    ++ +  +   +  +P                E+    
Sbjct: 182 RLSVR--GDSGSY-LGDDASWHRSERYLREALDELGLP---------------YERVEGE 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            A      + ++ D+    + +S   ++      FG         T+ G DG  H   + 
Sbjct: 224 AAIYGPKIDVQVADARGREETLSTVQVDEQMPGRFG--------LTYTGDDGARHRPVLV 275

Query: 316 SYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             G + +M  + A++   HDG+   W   +AP ++ ++ +        DA   +   L++
Sbjct: 276 HRGLLSSMERMTALLVELHDGRMPTW---LAPVQVRVLPVA---DRHADAAGALRDELAR 329

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G           +G +   A         ++G   ++   V++    T +R   ++   
Sbjct: 330 AGVRAEV-SHDGSLGRRIRDARERRDTYLAVLGDGELASGTVDVTAPATQVRAAPAVAAF 388

Query: 435 INYASHRFSNNRPV 448
           +   +      R V
Sbjct: 389 VRELAAEIRERRRV 402


>gi|145593854|ref|YP_001158151.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|145303191|gb|ABP53773.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 468

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 138/430 (32%), Gaps = 77/430 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ F    Q+    A++A +  +  T +I           P G    + + A +     
Sbjct: 8   RAEDFPRWYQDLIAKAKLADNGPVRGTMVIR----------PAGYAIWERMQAEMDNRIK 57

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDI 117
             GA     P       L  E+   + +  E+  +         + ++  PT E V+ + 
Sbjct: 58  AAGAENAYFPLFIPEGHLKREAEHVEGFSPELAVVTHGGGKQLAEPVVVRPTSETVIGEF 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               + SYR+LP    Q     R ELRPR        FL    + +              
Sbjct: 118 MAKWVDSYRDLPLLLNQWANVVRWELRPRI-------FLRTSEFLWQ------------- 157

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          E      T E     ++  +         
Sbjct: 158 -------------------------------EGHTAHTTREDARAYARRILHEAYEDLMV 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +   I     +         AT+    E              + +++G     G  +   
Sbjct: 187 NVLAIPVQVGLKTARERFAGATATYTLEG--------MMGDGKALQLGTSHELGQNFGRA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              ++  A+G   Y    S+G  + R++  +I    D  G+  P  +AP +  ++ +K  
Sbjct: 239 FDISYTSAEGGREYAWTTSWG-TSTRMLGGLIMCHGDDDGLRVPPKLAPVQAYVMVVKDG 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +A  +++  L   G  V  DD  +   G +   A+L G+P++V +G + ++    
Sbjct: 298 -EGVGEAAARLHDALRDAGVRVALDDRTDTPFGRRAVDAELRGYPVRVEIGPRDLAAGNA 356

Query: 417 EIKHRLTGIR 426
            +  R  G +
Sbjct: 357 VVVRRTDGSK 366


>gi|238916041|ref|YP_002929558.1| prolyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|259511595|sp|C4Z1D7|SYP_EUBE2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238871401|gb|ACR71111.1| prolyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 479

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 136/405 (33%), Gaps = 58/405 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P G    +N+   +      TG   + +P      L   E    + +  E+  
Sbjct: 38  KGCMIFKPAGYAIWENIKNEMDRRFKETGVENVYLPMFIPESLLEVEKDHVEGFAPEVAW 97

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +           P  E                            R  +RP      + E 
Sbjct: 98  VT-----YGGLNPLQE----------------------------RMCVRP------TSET 118

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L  D Y           SY  +     +++++        + E+ P     S EF+    
Sbjct: 119 LFCDFYK------DEIQSYRDL----PKVYNQWCSVVRWEK-ETRPFLR--SREFLWQEG 165

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                     +     + +   DF + +    +++         +        ++L  + 
Sbjct: 166 HTAHATAEEAEARTQQMLNLYADFCEEVLAIPVIKGRKTDKEKFAGAEATYTIEALMHDG 225

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FG  ++      +   D K  YV   S+G    R++ AVI +  D 
Sbjct: 226 ----KALQSGTSHNFGDGFAKAFGIQYTDKDNKLKYVHQTSWG-TTTRLIGAVIMTHGDD 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  VAP ++ +I I        D   ++   L   G  V  DD  +  G +F+  
Sbjct: 281 SGLVLPPKVAPVQVDVIPIMQKKAGVLDKAYEVGQALKAAGLRVKVDDSDKNPGWKFSEQ 340

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           ++ G P++V +G + +  ++  I  R T  +  +S++E+ +    
Sbjct: 341 EMRGIPVRVEMGPRDIEANQAVIVRRDTREKITVSIDELADRIPE 385


>gi|54020489|ref|YP_115908.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|81823524|sp|Q600Q7|SYP_MYCH2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53987662|gb|AAV27863.1| prolyl aminoacyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 479

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 139/419 (33%), Gaps = 67/419 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLR 95
           KG   + PLG K  +N+  I+     +     +  P L   D    E    + +  E+L 
Sbjct: 34  KGTIYFKPLGYKIWENIVKIVNAYFVKQKIENVYFPLLIPQDFIEKEKKHIEGFAPELLT 93

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D    + +   PT E +  D F++ I     LP    Q     R E +     +R
Sbjct: 94  ITKVGDKNLVENIYIRPTSELLFADYFKAEIAKNNILPIKLNQWSQVLRWE-KTTNPFLR 152

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EFL ++ ++   +   +     K+     R +       + +   SG           
Sbjct: 153 NTEFLWQEGHTIHASKVEADQFAKKI----ARFYKYFLENYLAIPVISG----------- 197

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E + F                                                 
Sbjct: 198 ---QKTEREKFAGAVNTYTVEA-------------------------------------- 216

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + R ++     + G  ++      +K  + K       S+G+ + R++ A++  
Sbjct: 217 ---MMQNFRALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMV 272

Query: 332 SHDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D  G+I+P  +AP ++ ++      +Q  +   +KI   L         DD  +QIG 
Sbjct: 273 HSDDNGLIFPPKIAPIQVDILEFFSKKNQEVKIFAKKIAKILKNAKISYKIDDTDQQIGY 332

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +   +++ G P+++ +G   V ++++ +  R    +   +++ +           +  L
Sbjct: 333 KINNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILEQIQADL 391


>gi|15828654|ref|NP_326014.1| prolyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|14089596|emb|CAC13356.1| PROLYL-TRNA SYNTHETASE (PROLINE--TRNA LIGASE) [Mycoplasma pulmonis]
          Length = 501

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 145/413 (35%), Gaps = 68/413 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P      +N+     +     G   + +P L    L   E    + +  E+  
Sbjct: 59  KGTLIFKPNSYGIWENIQLQFNKILKAKGIKNVYLPLLIPESLMKAEFEHIEGFAPELAT 118

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           L         + +   PT E +    F++ I+SY++LP  + Q     R E +     +R
Sbjct: 119 LTKVGSKNLSENIYLRPTSEVLFQKFFKAEIESYKDLPKIYNQWANVIRWE-KTTNPFLR 177

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           S EFL ++ +S     E +  +         R F R  LK+                   
Sbjct: 178 STEFLWQEGHSSH---ESAIEA---------RKFTREMLKTYC----------------- 208

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F  K      I  + T  +      S                        
Sbjct: 209 ---------KFLRKFLAIPTIMGKKTPREKFSGAYSTYTLEAM----------------- 242

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G   Y    +S      FK ++ K  +V   S+G+ + R++ A+I +
Sbjct: 243 ----MKDGKALQSGTTHYLAQNFSEAYDVNFKDSENKKQFVYQTSWGL-STRLIGAIIMT 297

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +GII P  VAP +I ++               ++   L K    V  D   + +G 
Sbjct: 298 HGDNRGIIIPPFVAPCQIDILAFNPRRSAEIEKFVNQVEKILKK-PFRVNVDRSDKTLGF 356

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + +++ G PL++ +G +   +++V +  R T  ++ +S+ +++  +     
Sbjct: 357 KASQSEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIVKVSRETLQ 409


>gi|219849360|ref|YP_002463793.1| prolyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|259511579|sp|B8G3V5|SYP_CHLAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219543619|gb|ACL25357.1| prolyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 480

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 74/457 (16%), Positives = 146/457 (31%), Gaps = 86/457 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +++L I++E    AE+A            +  +G       G    + +   + +    T
Sbjct: 15  QWYLDIVREA-DLAEVA------------EVVRGCIVVKAHGWAIWELMQRALDDRIKAT 61

Query: 65  GAIEMSVPTLQSADL-WVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFR 119
           G   +  P L        E+   + +  E+  +     +   +  +  PT E ++   + 
Sbjct: 62  GHANVQFPLLIPKSFIMKEAEHVEGFAPEVAEVTRAGGEELAEPYVIRPTSETIIGYFYS 121

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+SYR+LP  + Q     R E       MR+R FL   A  +      +  +  +   
Sbjct: 122 KWIRSYRDLPLLYNQWANVMRWE-------MRTRPFLRT-AEFWWQEGHTAHATEAEAEE 173

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             LRI H +    +        I G             E + F                 
Sbjct: 174 ETLRILHEVYADFVEKEMAVPVIRGL----------KTEKEKFPGALRS----------- 212

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                            E      R ++ G     G  ++    
Sbjct: 213 ------------------------------YCIEAMMQDGRALQAGTSHNLGQNFARAFD 242

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            TF        Y    S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I  +D+
Sbjct: 243 ITFTDQHNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLVLPPRLAPIQVVVVPIYKNDE 301

Query: 360 V---CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 +A  ++ A           DD      G +F   +L G P+++ +G K V+   
Sbjct: 302 ERSAVMEAVNRMTAAWKG-RLRFKVDDRDTYSPGYKFNEWELKGVPVRIEIGPKDVAKET 360

Query: 416 VEIKHRL---TGIREDMSLEEVINYASHRFSNNRPVL 449
           V +  R       +  +    +        +  +  L
Sbjct: 361 VALARRDMPGKAGKSFVPQAGLTERIEALLAEMQTGL 397


>gi|254584943|ref|XP_002498039.1| ZYRO0G00704p [Zygosaccharomyces rouxii]
 gi|238940933|emb|CAR29106.1| ZYRO0G00704p [Zygosaccharomyces rouxii]
          Length = 681

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 139/436 (31%), Gaps = 70/436 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      +++     +     G      P  + S  L 
Sbjct: 193 QQILTKGEMLDYYDVSGCYILRPPSYSIWESIQRWFDDRIKAMGVQNAYFPLFVSSRVLE 252

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+SYR+LP    Q  
Sbjct: 253 KEKDHVEGFAPEVAWVTKAGSSDLEEPVAIRPTSETVMYPYYAKWIRSYRDLPLKLNQWN 312

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT   ++    ++   Y  ++    L ++P+ 
Sbjct: 313 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTKADAEEEVLQILDHYAGVYEE--LLAVPV- 369

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F    F              I    S         
Sbjct: 370 ---------------VKGRKTEKEKFAGGVFTTTVEGYIPQTGRGIQGATSHHLGQNFSK 414

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                V N    D    N           + +   T+    M               + S
Sbjct: 415 MFNVSVENPLGPDHPKVNV--------FQNSWGLSTRVIGVM-------------TMIHS 453

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIY 369
                            D KG++ P  V+ ++  ++ +    +   +          +I 
Sbjct: 454 -----------------DNKGLVIPPRVSQYQAVVLPVGITKKTTEEQRAHIHSSAREIE 496

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +RL K G   F D +     G +FA  +L G PL++  G K +  ++V +  R    +  
Sbjct: 497 SRLKKAGVRAFGDYNDNYTPGWKFAQYELKGIPLRLESGPKDIESNQVTVVRRNDFRKVT 556

Query: 429 MSLEEVINYASHRFSN 444
           + L+E+          
Sbjct: 557 VKLDELETRIPELLEE 572


>gi|329569947|gb|EGG51702.1| proline--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 516

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 104/168 (61%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           +REE  +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T+
Sbjct: 1   MREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTE 60

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + R  I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY  
Sbjct: 61  LIRDEINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRD 120

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
              +Y RIF R GL+   +  + G +GG  S EF+ +++ GE  +  S
Sbjct: 121 YEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYS 168



 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 3/227 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E     +   +     +     +D   L ++         +  D+   +  D  P+ 
Sbjct: 281 NVAEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDG 340

Query: 275 KRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    +GIE+GHIF  GT+YS  M AT    +G++  V MG YGIG  R+++A++E +
Sbjct: 341 NGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQN 400

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+      +++ A +++ G +V  DD  E+ G +F
Sbjct: 401 ADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKF 460

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           A ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ +  S
Sbjct: 461 ADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLS 506


>gi|168704849|ref|ZP_02737126.1| prolyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 512

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 152/480 (31%), Gaps = 110/480 (22%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +++L I++E    A +A +  +           G     P G    + +   +      T
Sbjct: 14  QWYLDIVKE----AGLADNSDVR----------GCMVIKPTGFALWEKMQKALDGLFKST 59

Query: 65  GAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD-----------------RNDKAMIY 106
           G +    P       L  E    + + KE   +                     ++ +I 
Sbjct: 60  GHVNAYFPLFIPMSFLAKEEQMAEGFAKECAVVTHYRLKAEPGKPLHVDPAAELEEPLIV 119

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PT E ++ + ++  ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T
Sbjct: 120 RPTSETIIWNTYKKWVQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHAT 178

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            + ++    +M   Y                                      Q F  + 
Sbjct: 179 AKEAEEETLQMVRVY--------------------------------------QKFAEEW 200

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                +    TD          +                              + ++ G 
Sbjct: 201 MAMPVLVGPKTDGQKFPGAVYTLCIEAM---------------------MQDGKALQAGT 239

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             + G  ++      FK    K+ Y    S+G+ + R++  +I +  D  G++ P  +AP
Sbjct: 240 SHFLGQNFAKAFDVKFKDQSNKEEYAWATSWGV-STRLIGGLIMTHSDDNGLVVPPRLAP 298

Query: 347 FKISLINIKAHDQV------CRDACEKIYARLSKVG------CDVFWDDM-GEQIGSQFA 393
             + ++ +  +D          +        L +          V  D M  +Q G ++A
Sbjct: 299 THVVIVPLGKNDAERGPSIAAAEKLAAELRALPRDDFFGYEPISVKIDTMFDKQPGFRYA 358

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFSNNRPVL 449
             ++ G P++V +G K +      +  R      G +  + L     + S    + +  L
Sbjct: 359 EHEVRGVPVRVEIGPKDIEKGACAVARRDVPGKEGKQFGIPLPGAAEHISKLLRDIQASL 418


>gi|330878004|gb|EGH12153.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 162

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHI+  GTKYS  M     G +GK   + MG YGIG  RVVAA IE + D  GIIW D++
Sbjct: 1   GHIWQLGTKYSEAMKCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTL 60

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ--IGSQFAVADLLGFPL 402
           APF+I+LI ++      R+A +K+YA L+  G +V  DD  ++   G +FA  +L+G P 
Sbjct: 61  APFQIALIPLRYETDAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPH 120

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++V  + +++  +E K R     + +++ +V+++   + +
Sbjct: 121 RIVVSDRGLAEGNLEYKSRTESQPQAIAVADVLSFIQGKVN 161


>gi|167464457|ref|ZP_02329546.1| prolyl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 424

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 131/395 (33%), Gaps = 68/395 (17%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHE 111
           + +    TG      P       +  E    + +  E+  + +    + ++ +   PT E
Sbjct: 1   MDDMFKETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLAVRPTSE 60

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            ++  ++   I SYR+LP    Q     R E        R+  FL    + +        
Sbjct: 61  TMVGHMYAEWINSYRDLPLLINQWANVVRWEK-------RTLPFLRTSEFLWQE------ 107

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                                           G  +HE        E         M   
Sbjct: 108 --------------------------------GHTAHED-------EADARKETMQMLEI 128

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
             +   D+  I  +            A      E              + ++ G   Y G
Sbjct: 129 YRTFVEDYLAIPVITGQKTPSEKFAGAIDTYSIEA--------MMKDGKAVQAGTSHYLG 180

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           T ++      F   + +  +V   S+G+ + R++ A+I +  D +G++ P  VAP ++ +
Sbjct: 181 TNFAEAFDIKFLNRENQHEFVHTTSWGV-STRLIGAMIMAHGDDRGLVMPPKVAPTQVIM 239

Query: 352 INIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           I I              ++   + K G  V  D   +  G +F   ++ G P++V +G +
Sbjct: 240 IPIGPAKTRDQVLAKTYELQTEIKKAGFRVRVDAREQSPGWKFNEYEMRGVPVRVELGPR 299

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + + +V +  R+TG ++ ++ + ++   +     
Sbjct: 300 DMENGQVILVSRVTGEKKVVAQDNLVEEITRLLDE 334


>gi|71893734|ref|YP_279180.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
 gi|114152216|sp|Q4A9V2|SYP_MYCHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71851861|gb|AAZ44469.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 479

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 138/419 (32%), Gaps = 67/419 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLR 95
           KG   + PLG K  +N+  I+     +     +  P L   D    E    + +  E+L 
Sbjct: 34  KGTIYFKPLGYKIWENIVKIVNAYFVKQKIENVYFPLLIPQDFIEKEKKHIEGFAPELLT 93

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +         + +   PT E +  D F++ I     LP    Q     R E +     +R
Sbjct: 94  ITKVGGKNLVENIYIRPTSELLFADYFKAEIAKNNILPIKLNQWSQVLRWE-KTTNPFLR 152

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EFL ++ ++   +   +     K+     R +       + +   SG           
Sbjct: 153 NTEFLWQEGHTIHASKVEADQFAKKI----ARFYKYFLENYLAIPVISG----------- 197

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E + F                                                 
Sbjct: 198 ---QKTEREKFAGAVNTYTVEA-------------------------------------- 216

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + R ++     + G  ++      +K  + K       S+G+ + R++ A++  
Sbjct: 217 ---MMQNFRALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMV 272

Query: 332 SHDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D  G+I+P  +AP ++ ++      +Q  +   +KI   L         DD  +QIG 
Sbjct: 273 HSDDNGLIFPPKIAPIQVDILEFFSKKNQEVKIFAKKIAKILKNAKISYKIDDTDQQIGY 332

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +   +++ G P+++ +G   V ++++ +  R    +   +++ +           +  L
Sbjct: 333 KINNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILEQIQADL 391


>gi|46121741|ref|XP_385425.1| hypothetical protein FG05249.1 [Gibberella zeae PH-1]
          Length = 553

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 148/436 (33%), Gaps = 72/436 (16%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADL 79
            +++L+  M+  ++   G +   PL     + +    +      G  E + P  L S  L
Sbjct: 62  QEVVLKAEMVEYYTEISGFFVLRPLSMHIWNEIRKWFQGHIEEMGVDETNFPMFLSSKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 122 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 182 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGAEVLEILELYAGVYEK--LLAVPV 239

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V     E + F    +         ++   I    S        
Sbjct: 240 ----------------VRGRKTENEKFAGGYYTTTVEGYIPSNGRGIQGATSHALGQNFS 283

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 V + +   S     + S         +   T+                      
Sbjct: 284 KMFDITVEDPQKQGSHIHVWQNS---------WGLSTR---------------------- 312

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-------DQVCRDACEKI 368
              IG M ++        D KG++ P  VA  ++ ++ +  +        +   D  E+I
Sbjct: 313 --VIGVMVMIHG------DDKGLVLPPRVAKTQVVIVPVGINKKTTPEEKKKHEDQVEEI 364

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            A L K G  V  D   G     +F   +L G PL+V  G K  +   +    R TG + 
Sbjct: 365 RANLKKAGVRVTADWREGYTPAWKFNDWELKGVPLRVEFGPKDAAKGVISTARRDTGEKG 424

Query: 428 DMSLEEVINYASHRFS 443
           ++++ +V         
Sbjct: 425 EIAIADVATKVPELLE 440


>gi|260437797|ref|ZP_05791613.1| proline--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292809821|gb|EFF69026.1| proline--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 479

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 137/405 (33%), Gaps = 58/405 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P G    +N+ A + +    TG   + +P      L   E    + +  E+  
Sbjct: 38  KGCMIFKPAGYAIWENIKAELDKRFKETGVENVYMPMFIPESLLQREKDHVEGFAPEVAW 97

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +           P  E                            R  +RP      + E 
Sbjct: 98  VT-----YGGLNPLQE----------------------------RMCVRP------TSET 118

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L  D Y           SY  +     +++++        + E+ P     S EF+    
Sbjct: 119 LFCDFYK------DEIQSYRDL----PKVYNQWCSVVRWEK-ETRPFLR--SREFLWQEG 165

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                     +     + +   DF +      +V          +        ++L  + 
Sbjct: 166 HTAHATAEEAEARTQQMLNLYADFCEDFLAIPVVRGRKTDKEKFAGAEATYTIEALMHDG 225

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FG  ++      +   D K  YV   S+G+   R++ A+I    D 
Sbjct: 226 ----KALQSGTSHNFGDGFAKAFGIQYTDKDNKLKYVHQTSWGMT-TRLIGALIMVHGDD 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  VAP ++ +I +        +   ++  +L K G  V  DD  +  G +F+  
Sbjct: 281 SGLVLPPRVAPVQVDIIPVMQKKAGVLEKAAEVKEKLIKAGLRVKVDDSDKNPGWKFSEQ 340

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           ++ G P+++ +G + +  ++  I  R T  +  +S++E+      
Sbjct: 341 EMRGIPVRIEMGPRDIEANQAVIVRRDTREKTVVSIDELDVKVKE 385


>gi|269986191|gb|EEZ92503.1| prolyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 477

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 153/440 (34%), Gaps = 71/440 (16%)

Query: 15  PRDAEIAS--HKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            +++++ S  +++++++ M      KG   + P G +  +     +  +    G      
Sbjct: 8   KKESDLISWYNQVVIKSEMADFSIVKGFAVYRPYGYEMWERSVEYLDGKFKSIGVKNAYF 67

Query: 72  PTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           P L     L  E    + +  E+  +      + D+ +   PT E +M D +   IKSYR
Sbjct: 68  PLLIPESVLSKEKEHIEGFNPEVAWVTMGGDTKLDERLAIRPTSETIMYDSYSKWIKSYR 127

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +LP    Q     R E +     +R RE L ++ +    T E +  +   +   Y     
Sbjct: 128 DLPLLINQWNTMVRWETKETRLFLRGREVLWQEGHCVFKTEEEADKNARDILNFYKDFLE 187

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            +   ++P+ A     G     E    A                           + +  
Sbjct: 188 NM--LAVPVIA-----GKKSQSEKFAGA---------------------------VTTYT 213

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                     +  +  H      + P + +      E+ + F                  
Sbjct: 214 VEAVLSNNFMSQAATSHYLGQNFAKPFDIKFLDEKNELQYPFQ----------------- 256

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDAC 365
                    S+GI +MR +  ++    D KG++    VAP++  +I  IK       + C
Sbjct: 257 --------TSWGI-SMRSIGIMLLVHGDDKGLVLSPHVAPYQCVIIPIIKEEKDKVLEYC 307

Query: 366 EKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +I +RL ++G  V  D       G +    DL G PL++ +G + +    + +K R+  
Sbjct: 308 GQIESRLKEIGIRVLLDSREDYSPGWKLNEYDLKGVPLKIQIGKRELESRNISLKTRINN 367

Query: 425 IREDMSLEEVINYASHRFSN 444
           ++  +S  E I     +   
Sbjct: 368 VQSIVSFNE-IEQVKEKLEE 386


>gi|170096813|ref|XP_001879626.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645029|gb|EDR09277.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 709

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 142/442 (32%), Gaps = 79/442 (17%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +L+  M+  +S  G Y   P      + +      +    G      P   S   L  E 
Sbjct: 224 LLKADMLDYYSVSGCYILKPWSYSIWEEIQTWFNTQIKELGVQNSYFPMFVSQSVLEREK 283

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E  M   +   I+S+R+LP    Q     
Sbjct: 284 DHIEGFSPEVAWVTRAGNSDLEEPIAIRPTSETAMYPYYAKWIRSHRDLPLKLNQWNSVV 343

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT   +     ++   Y +++    L ++P+    
Sbjct: 344 RWEFKNPQPFLRTREFLWQEGHTAFLTKAEADAEVRQILDLYRQVYED--LLAVPV---- 397

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             I G  S          E + F    +         T    I +  S            
Sbjct: 398 --IPGIKS----------EKEKFAGGLYTTTLEGFIPTSGRGIQAATSHCLGQNFSRPEM 445

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            ++  E   D        ++ G+                                 +  I
Sbjct: 446 FNIFVEDPVDKSKSYVWQNSWGL--------------------------------STRTI 473

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN--IKAHD-----QVCRDACEKIYARL 372
           G M +V        D +G++ P  VA  ++ ++   I A           DACE++   L
Sbjct: 474 GVMVMVHG------DNQGLVLPPRVASIQVIVVPCGITAKSTDEQRAEINDACEELAKTL 527

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGIREDMS 430
            K G     D   G   G +F   +  G PL++ +G   +     + ++ R  G ++ + 
Sbjct: 528 KKAGVRAKADLREGYTPGYKFNDWEQKGVPLRLEIGPNDLKKQQTLSVR-RDNGDKKPLP 586

Query: 431 L-------EEVINYASHRFSNN 445
           L        + +        N 
Sbjct: 587 LANIGKNVADFLEVIQDNMFNR 608


>gi|221632630|ref|YP_002521851.1| prolyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221156093|gb|ACM05220.1| prolyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 484

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/453 (16%), Positives = 143/453 (31%), Gaps = 81/453 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     E  + AE+A    +  T +I           P G    +N+ A +      TG 
Sbjct: 18  FDRWYVEVIQKAELADESPVRGTRVIR----------PYGFALWENMQAELDRRIKATGV 67

Query: 67  IEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSH 121
                P          E+     +  E+  +        ++ +   PT E ++  +F   
Sbjct: 68  QNAYFPLFIPKSFLEREAEHIKGFAPEVAWVTRGGDKELEEWLAVRPTSESIICPMFARW 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R E RP       R FL                         
Sbjct: 128 VQSYRDLPILINQWCSVVRWEERP-------RAFLRT----------------------- 157

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                   L+ +              H      +  E +     +            + D
Sbjct: 158 --------LEFLWQE----------GHTVHATLEEAEERARLMLEV-----------YRD 188

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +     +         +          ++          ++       G  +      T
Sbjct: 189 FVESELAIPVIPGQKTESEKFAGALRTYTIEAMMGGKHWALQSATSHNLGDHFGKVFDIT 248

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV- 360
           F   +GK  YV   S+G+ + R + A++    D +G+  P  VAP ++ ++ I   D+  
Sbjct: 249 FLDREGKRRYVFNTSWGL-SHRTIGAMVMVHGDDRGLKLPPRVAPIQVVIVPIWRKDEER 307

Query: 361 --CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +  +++ A L +    V  D    +  G +F   DL G P+++ +G + V+  +V 
Sbjct: 308 RQVEETVDRVRAMLRRA-VRVHADLRDDKTPGWKFNDWDLKGVPIRLEIGPRDVASDQVT 366

Query: 418 IKHRL-TGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R   G R+ + +  ++        + +  L
Sbjct: 367 LVRRDVLGQRQAVPIANLVGAVQSELESIQVSL 399


>gi|50290081|ref|XP_447472.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526782|emb|CAG60409.1| unnamed protein product [Candida glabrata]
          Length = 552

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESG 84
           +   G I +   G+++WLPLG + L  + A++R+  +    AIE+S+ +L     W ++G
Sbjct: 35  LQNLGFIRRTQSGLFNWLPLGLRTLHKLEALVRKRMDEDASAIEVSLSSLSPKINWEKTG 94

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R+D    E+ ++ D N       PT EE +T + +++IKSY++LP T YQI  K+RDE R
Sbjct: 95  RWDKSN-ELFKVKDNNAFEYCLTPTCEEDITSLMKNYIKSYKDLPITAYQISRKYRDEKR 153

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKDAYSF  + E +   +NKM   Y RIF  L +      A+SG IGG
Sbjct: 154 PRGGLLRGREFIMKDAYSFASSEEQAIEIFNKMDSVYDRIFSDLKIPYKAAYADSGEIGG 213

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           DLS E+  L   GE  VF            +     +   + 
Sbjct: 214 DLSKEYHFLNSFGEDTVFSCDSCGTSSTIEKCNSLPEEDGMY 255



 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 15/226 (6%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           MD  I S +   D  +S             +  D  ++++     +    ++  IEVGHI
Sbjct: 328 MDVRINSRSNFPDFPLSKYLKNNFGQIDGISIVDATDKEICGKCEDGTLHASNSIEVGHI 387

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F+ G KYS P    FK  +  D  +  MG YGIG  R++ A  E   D  G+ WP  +AP
Sbjct: 388 FHLGDKYSKPFEVNFKDENNSDDSIVSMGCYGIGISRLIGAAAEIGRDHMGLRWPQVIAP 447

Query: 347 FKISLINIKAHDQVC-RDACEKIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQ 403
           +++S++       V   D  + +   L         DD       G + A++  +G P+ 
Sbjct: 448 YQVSVVTSNNEGMVAINDMKKSLMKNLDTF----DLDDLHRSTGFGGRIALSHAIGIPIC 503

Query: 404 VIVGSKFVSDSKVEIKHR--LTG-----IREDMSLEEVINYASHRF 442
           VI+G+K   + ++E++ +    G      ++ +   +VI+  +   
Sbjct: 504 VIIGTKSWPNVEIEVRGKKWDNGDDTPIEKKSVHYSDVIDTVNELL 549


>gi|284052870|ref|ZP_06383080.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 508

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 111/348 (31%), Gaps = 44/348 (12%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   ++ EQ R G   + 
Sbjct: 196 EEALRRDHRRLGKELGLFI-FSDQVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L   +L+  SG +  Y +++  +  +  D+  +    +      I++S ++SYR LP
Sbjct: 255 TPHLGRVNLFKTSGHWQKYREDLFPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELP 314

Query: 130 FTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +    +R E      G+ R R F   DA+ F +TPE     + K+      +  +L
Sbjct: 315 IRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLF-VTPEQLDDEFLKVVDLIQSVLKKL 373

Query: 189 GLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            L  S   R        D         +  E  +  +                       
Sbjct: 374 KLDQSFKARLSFRDPNSDKYIGSDQAWEKAENAIRRA----------------------- 410

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATF 302
                        +        +    K        +   +  GT    Y+LP      +
Sbjct: 411 -------VETLGMNYFEGIGEAAFYGPKLDFIVQDALEREWQLGTVQVDYNLPERFDLEY 463

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              DG +   V +     G++  +  ++   + G   +W   +AP  +
Sbjct: 464 VAEDGTRQRPVMIHRAPFGSLERLIGILIEEYTGDFPLW---LAPVMV 508


>gi|146084142|ref|XP_001464936.1| bifunctional aminoacyl-trna synthetase [Leishmania infantum JPCM5]
 gi|134069031|emb|CAM67175.1| putative bifunctional aminoacyl-tRNA synthetase [Leishmania
           infantum JPCM5]
          Length = 810

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 138/421 (32%), Gaps = 71/421 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + +  MI  +   G Y   P        V   +  +  + G  +   P   S + L  E 
Sbjct: 319 ITKAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRNCLEREK 378

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I+S+R+LP          
Sbjct: 379 DHIEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVI 438

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       +R+REFL ++ +      E        +   Y  ++ +  L ++P+    
Sbjct: 439 RWEFSHPTPFIRTREFLWQEGHCAWAKAEECAKEVLDILECYASVYEQ--LLAVPV---- 492

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                       V     E + F                  D  +      +        
Sbjct: 493 ------------VRGRKTEKEKFAG---------------GDYTTTVETFIEAVGRGCQG 525

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  HN                         F  ++  P +      + +       S+G+
Sbjct: 526 ATSHNLGQNFGKM-----------------FDIRFQDPEN------NEQTLIPWQNSWGL 562

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARL 372
            + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L
Sbjct: 563 -STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQELLASCRRLESEL 621

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  +  
Sbjct: 622 CEGGVRAKCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVVW 681

Query: 432 E 432
           +
Sbjct: 682 D 682


>gi|328780811|ref|XP_003249866.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Apis mellifera]
          Length = 1501

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 130/427 (30%), Gaps = 72/427 (16%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ ++GMI  +   G Y   P        +   I +E  + G  E   P  +    L  
Sbjct: 1016 QIITKSGMIEYYDVSGCYILRPWSFAIWKAIKEYIDKEITQMGVQECYFPIFVTRTVLEK 1075

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    +    + +   PT E VM   +   +KS   LP    Q   
Sbjct: 1076 EKAHITDFAPEVAWVTKCGESNLSEPIAIRPTSETVMYPAYAKWLKSDTELPLKLNQWNN 1135

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++   T   +      +   Y R++  L         
Sbjct: 1136 VVRWEFKDPKPFLRTREFLWQEGHTAFATKAEADEEVLMILNMYARVYEDL--------- 1186

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                              I    T+ +     +           
Sbjct: 1187 -----------------------------LAVPVIKGRKTEKEKFAGGDYTTTVEAFIST 1217

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +   +             ++    +E                A          +V   S+
Sbjct: 1218 SGRAIQGATSHHLGQNFSKMFNIQVE---------------GAVESDE---KTFVYQNSW 1259

Query: 318  GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYA 370
            G+   R +  +I    D KG++ P +VA  +  ++             ++    C K+  
Sbjct: 1260 GLT-TRTIGVMIMIHGDDKGLVLPPNVACIQAIIVPCGITVNTTPQQRELLFSECNKLLD 1318

Query: 371  RL-SKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L       V  D    +  G +F   +L G P+++ +G K +  ++V    R    R  
Sbjct: 1319 ELSKDKSLRVKADYRNNRTPGWKFNHWELKGVPVRIELGPKDLEKNQVTFVRRDNFQRVF 1378

Query: 429  MSLEEVI 435
             +  EV+
Sbjct: 1379 ANRSEVL 1385


>gi|14521542|ref|NP_127018.1| threonyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|14548274|sp|Q9UZ14|SYT_PYRAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|5458761|emb|CAB50248.1| thrS threonyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 625

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 159/447 (35%), Gaps = 52/447 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    + E    KLML   ++        G   + P G+     +   + E+    G
Sbjct: 194 EIAKNRIAEKEPPHVKLMLEHELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVTEKVIEYG 253

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +  I
Sbjct: 254 AMEVETPIMYDFEHPALEKYLNRFPARQ----YIVLSGDKRYFLRFAACFGQFMIKKDAI 309

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SYRNLP   Y++    FR E R    G+ R R F M D ++     E +K  + K F  
Sbjct: 310 ISYRNLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDIEQAKEEFKKQFKL 369

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                  ++ V     E                   +  
Sbjct: 370 SMEVLEGVGLTP---------------EDYEVAIRFTED--------FWKEHKDFIVELV 406

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +I    ++E W   +            D+L +   +S   I+V +   FG         
Sbjct: 407 KLIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFG--------I 458

Query: 301 TFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINI 354
           T+   +G++ Y  +   S      RV+ A++E       +GK  ++P  ++P ++ +I +
Sbjct: 459 TYYDENGEEKYPLILHCSPSGAIERVMYAILEKQAKLMNEGKKPMFPLWLSPIQVRVIPV 518

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D    +  +L      V  DD  E++  +   A+    P  V+VG++   + 
Sbjct: 519 ---SEEYLDYALYVAGKLEGAKIRVDVDDEDERLNKKIRRAEKEWIPYIVVVGAREKENG 575

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            + ++ R  G + +  +EE+I     +
Sbjct: 576 TITVRRREDGKQYETRIEELIKEIKEK 602


>gi|156841840|ref|XP_001644291.1| hypothetical protein Kpol_1030p43 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114930|gb|EDO16433.1| hypothetical protein Kpol_1030p43 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 580

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 118/206 (57%), Gaps = 3/206 (1%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVES 83
           LM   G+IH    G  +WLPLG ++L  +  +I  +  N  GA E+ + T+   DLW +S
Sbjct: 38  LMKHAGLIHGSRSGFINWLPLGLRSLRKLELLIHNKMQNEAGAYEVKLSTISPKDLWEKS 97

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            R+++  KE+ +L D  D       T EE +T++  ++I SY+N+P T YQI  KFRDE 
Sbjct: 98  NRWNN--KELFKLKDSKDAQYCLTATCEEDITNLMMNYITSYKNMPITVYQIGNKFRDEK 155

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR G++R+REFLMKDAYSF  +   +  ++N M   Y  +F  L +      A+SG IG
Sbjct: 156 RPRGGLLRAREFLMKDAYSFARSKAQAIEAFNNMNKVYDSLFTELKIPFKSAWADSGDIG 215

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMD 229
           GDLS E+  +  +GE  +F      +
Sbjct: 216 GDLSKEYHYIHHSGEDTLFTCDHCNE 241



 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 10/200 (5%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           MD  I S     D  +   +     +    +  D  + +L  S  E +  S + IEVGH 
Sbjct: 331 MDIRINSNCNFPDFPLKKYAKNNFTSITDVSIIDAIDGELCGSCEEGQLKSDKSIEVGHT 390

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F+ GTKY+    AT+   + K   ++MG YGIG  R++ A+ E + D KG  WP  ++P+
Sbjct: 391 FHLGTKYTESFGATYFDENSKPSLIEMGCYGIGVSRLIGAIAEITRDSKGFRWPSVISPY 450

Query: 348 KISL---INIKAHD---QVCRDACEKIYAR--LSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            +S+   +N+   +   +      + +Y    L       F D  G  IG Q  ++ L+G
Sbjct: 451 IVSICSQVNVSHKELNQERIDQVKDILYQSPILKNEIFSSFPDKTG--IGKQIELSQLIG 508

Query: 400 FPLQVIVGSKFVSDSKVEIK 419
            P  VI+GSK   + ++E++
Sbjct: 509 IPFNVIIGSKSWPNVEIEVR 528


>gi|223461182|gb|AAI41050.1| Glutamyl-prolyl-tRNA synthetase [Mus musculus]
          Length = 1512

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/454 (14%), Positives = 137/454 (30%), Gaps = 78/454 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      +++      E  + G  
Sbjct: 1016 LEAKKEENLAEWYS-QVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVE 1074

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHI 122
                P   S A L  E    + +  E+  +         + +   PT E VM   +   +
Sbjct: 1075 NCYFPIFVSQAALEKEKNHIEDFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 1134

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+LP    Q     R E +          FL    + +    +    ++     +  
Sbjct: 1135 QSHRDLPVRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAD 1184

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   L L +                                +      +    T+ +  
Sbjct: 1185 EVLQILELYAR----------------------------VYEELLAIPVVRGRKTEKEKF 1216

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +          A                    S R I+     + G  +S      F
Sbjct: 1217 AGGDYTTTIEAFISA--------------------SGRAIQGATSHHLGQNFSKMCEIVF 1256

Query: 303  KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN------- 353
            +     G+  +    S+G+   R +  ++    D  G++ P  VA  ++ +I        
Sbjct: 1257 EDPKTPGEKQFAYQCSWGLT-TRTIGVMVMVHGDNMGLVLPPRVASVQVVVIPCGITNAL 1315

Query: 354  IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +   +     C +   RL      V  D       G +F   +L G P+++ VG + + 
Sbjct: 1316 SEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMK 1375

Query: 413  DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              +     R TG +  ++ +E          + +
Sbjct: 1376 SCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQ 1409


>gi|160895412|ref|ZP_02076181.1| hypothetical protein CLOL250_02969 [Clostridium sp. L2-50]
 gi|156862914|gb|EDO56345.1| hypothetical protein CLOL250_02969 [Clostridium sp. L2-50]
          Length = 478

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/446 (15%), Positives = 141/446 (31%), Gaps = 69/446 (15%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             +G     P G    +N+   +     
Sbjct: 14  MDEDFAQWYTDVVKKAELTDYS----------SVRGCMILRPAGYAIWENIQKELDRRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
             G   + +P      L   E    + +  E+  +           P  E          
Sbjct: 64  EIGVENVYMPLFIPESLLQKEKDHVEGFAPEVAWVT-----QGGLDPLPE---------- 108

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                             R  +RP                 F        HSY  +    
Sbjct: 109 ------------------RLCVRPT------------SETLFCDLYSNIIHSYRDL---- 134

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++++        +  + P     S EF  L   G T    +++  +  I   N   D 
Sbjct: 135 PKVYNQWCSVVRWEK-TTRPFLR--SMEF--LWQEGHTAHATAEEAEERTIQMLNVYADF 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              + +I                E  +    E      + ++ G    FG  ++      
Sbjct: 190 CEQVLAIPMIKGRKTDKEKFAGAEATY--TIEALMHDGKALQSGTSHNFGDGFAKAFGVQ 247

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +  A+ K  YV   S+G+ + R++ A+I    D  G++ P  +AP ++ +I I    +  
Sbjct: 248 YTDANNKLQYVHQTSWGM-STRIIGAIIMVHGDDSGLVLPPRIAPTQVMIIPINQKKEGV 306

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +++ A LS+    V  DD  +  G +F+  ++ G P+++ +G K +   +  I  R
Sbjct: 307 LEKAQEVKAALSEK-FTVKLDDSNKNPGWKFSEQEMRGIPVRIEIGPKDIEAGQAVIVRR 365

Query: 422 LTGIREDMSLEEVINYASHRFSNNRP 447
               +  +SL+ +           + 
Sbjct: 366 DNREKTVVSLDNITEAVGEILEKMQA 391


>gi|310818519|ref|YP_003950877.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309391591|gb|ADO69050.1| Prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 477

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 144/417 (34%), Gaps = 72/417 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG     P G    +N+  ++ +     G      P L     L  E+   + +  ++  
Sbjct: 32  KGCMVIRPNGYALWENMQRVLDKMFKDLGHKNAYFPLLIPESYLKKEAEHVEGFNPQLAV 91

Query: 96  LAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      + ++ ++  PT E ++   F   I+SYR+LP    Q     R E       MR
Sbjct: 92  VTHAGGAKLEEPLVIRPTSETIINRSFAKWIQSYRDLPLLINQWANVMRWE-------MR 144

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R         F  T E                                   G   HE  
Sbjct: 145 TR--------LFLRTTEFLWQE------------------------------GHTCHETE 166

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+    Q+                 F +      ++    +     +        +++
Sbjct: 167 ADAEKETLQML-----------EVYRTFAEDYMAMPVLTGRKSETERFAGALRTYSIEAM 215

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            ++K    + ++ G     G  ++      F+G DGK H+V   S+G+ + R++  +I +
Sbjct: 216 MQDK----KALQAGTSHNLGQNFAKAFDTQFQGRDGKQHHVWQTSWGV-STRLIGGLIMT 270

Query: 332 SHDGKGIIWPDSVAPFKISLINI-----KAHDQVCRDACEKIYARLSKVGCDVFWDDMG- 385
             D  G++ P  +AP  + +I I      A      +    + A L + G +V  DD   
Sbjct: 271 HSDDAGLVVPPRLAPTHVVIIPILGKAADAEKTQVLEKVHAMAADLRRAGLNVLVDDDDT 330

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  G ++   +++G  L+V +G K ++     +  R    +E + L + +  A    
Sbjct: 331 KSPGFKYNEHEVVGTCLRVELGPKDLAKDSCVMVRRDVRQKEFVPLAQAVEKARAML 387


>gi|195443826|ref|XP_002069593.1| GK11601 [Drosophila willistoni]
 gi|194165678|gb|EDW80579.1| GK11601 [Drosophila willistoni]
          Length = 1717

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 136/448 (30%), Gaps = 76/448 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ +  MI  +   G Y            +      E  R G  E 
Sbjct: 1221 EATKEENLPDWYSQVITKGEMIEYYDVSGCYILRHWSFAIWKAIKNWFDAEITRRGVKEC 1280

Query: 70   SVP-TLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P  +  A L  E      +  E+  +    +    + +   PT E VM   +   I+S
Sbjct: 1281 YFPIFVSKAVLEREKTHIADFAPEVAWVTKSGESDLAEPIAVRPTSETVMYPAYAKWIQS 1340

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            YR+LP    Q     R E +          FL    + +    +    +Y     +   +
Sbjct: 1341 YRDLPIKLNQWNNVVRWEFKHPQP------FLRTREFLW----QEGHTAYANKDEADKEV 1390

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L                              +  +       +    T+ +    
Sbjct: 1391 LEILDL----------------------------YALIYTHLLAIPVMKGRKTEKEKFAG 1422

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      ++ 
Sbjct: 1423 GDYTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFEIVYED 1462

Query: 305  AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQ 359
             +  +  +V   S+GI   R +  +I    D +G++ P  VA  +  ++     +   D+
Sbjct: 1463 PETQQKKFVYQNSWGIT-TRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDE 1521

Query: 360  VCRD---ACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               +   AC+++  RL         D       G +F   +L G P+++ VG K +   +
Sbjct: 1522 ERAELLGACKQLEQRLIGAEVRCEGDYRDNYSPGWKFNHWELKGVPIRIEVGPKDLKAQQ 1581

Query: 416  VEIKHRLTGIREDMSLEEVINYASHRFS 443
            +    R TG +  + L +V         
Sbjct: 1582 IVAVRRDTGEKLTIPLADVEKKIPALLE 1609


>gi|82617575|ref|NP_084011.1| bifunctional aminoacyl-tRNA synthetase [Mus musculus]
          Length = 1512

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/454 (14%), Positives = 137/454 (30%), Gaps = 78/454 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      +++      E  + G  
Sbjct: 1016 LEAKKEENLAEWYS-QVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVE 1074

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHI 122
                P   S A L  E    + +  E+  +         + +   PT E VM   +   +
Sbjct: 1075 NCYFPIFVSQAALEKEKNHIEDFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 1134

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+LP    Q     R E +          FL    + +    +    ++     +  
Sbjct: 1135 QSHRDLPVRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAD 1184

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   L L +                                +      +    T+ +  
Sbjct: 1185 EVLQILELYAR----------------------------VYEELLAIPVVRGRKTEKEKF 1216

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +          A                    S R I+     + G  +S      F
Sbjct: 1217 AGGDYTTTIEAFISA--------------------SGRAIQGATSHHLGQNFSKMCEIVF 1256

Query: 303  KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN------- 353
            +     G+  +    S+G+   R +  ++    D  G++ P  VA  ++ +I        
Sbjct: 1257 EDPKTPGEKQFAYQCSWGLT-TRTIGVMVMVHGDNMGLVLPPRVASVQVVVIPCGITNAL 1315

Query: 354  IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +   +     C +   RL      V  D       G +F   +L G P+++ VG + + 
Sbjct: 1316 SEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMK 1375

Query: 413  DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              +     R TG +  ++ +E          + +
Sbjct: 1376 SCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQ 1409


>gi|111020488|ref|YP_703460.1| prolyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|110820018|gb|ABG95302.1| proline--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 530

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 147/423 (34%), Gaps = 70/423 (16%)

Query: 23  HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++++ + G++ +  +KG     P G +  + + + +      TG      P L     L 
Sbjct: 71  NEVVFKAGLVDRGPAKGTMVIRPYGYRLWELLQSELDRRIKDTGHENAYFPLLIPESYLG 130

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+   + +  E+  +        ++ ++  PT E ++ ++    I S+R+LP    Q  
Sbjct: 131 REAEHVEGFSPELAVVTHVGGKVLEEPLVVRPTSETIIGEMMAKWISSHRDLPLLLNQWA 190

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R ELRPR   +R+ EFL ++ ++  +    ++         Y  +     L +IP+ 
Sbjct: 191 NVVRWELRPRM-FLRTTEFLWQEGHTAHVDEASARRETMLALDIYHEVARE--LAAIPV- 246

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V  +    + F       + I     D   + S  S         
Sbjct: 247 ---------------VPGEKTPGERFAGAVAT-YTIEGMMRDGRALQSGTSHYMGIKFAS 290

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A      +E   + L            +G                               
Sbjct: 291 AFDIRFTSETGREELCHTTSWGMSTRMIG------------------------------- 319

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-ACEKIYARLSKV 375
                      ++ +  D KG+++P  +AP ++ ++ I     V  + A +++  RL  V
Sbjct: 320 ----------GIVMTHGDDKGLVFPPRLAPHQVVIVPITRGGNVAVEGAADELAHRLRSV 369

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEE 433
           G     D       G ++   ++ G P+++ +G + + D  V +  RL    ++ + ++ 
Sbjct: 370 GVRTHVDARPHLTPGFKYNEWEMRGVPVRLELGPRDLEDGTVMMVKRLGDDGKQAVPIDS 429

Query: 434 VIN 436
           +  
Sbjct: 430 LPE 432


>gi|148681120|gb|EDL13067.1| glutamyl-prolyl-tRNA synthetase [Mus musculus]
          Length = 1468

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/454 (14%), Positives = 137/454 (30%), Gaps = 78/454 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      +++      E  + G  
Sbjct: 972  LEAKKEENLAEWYS-QVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVE 1030

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHI 122
                P   S A L  E    + +  E+  +         + +   PT E VM   +   +
Sbjct: 1031 NCYFPIFVSQAALEKEKNHIEDFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 1090

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+LP    Q     R E +          FL    + +    +    ++     +  
Sbjct: 1091 QSHRDLPVRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAD 1140

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   L L +                                +      +    T+ +  
Sbjct: 1141 EVLQILELYAR----------------------------VYEELLAIPVVRGRKTEKEKF 1172

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +          A                    S R I+     + G  +S      F
Sbjct: 1173 AGGDYTTTIEAFISA--------------------SGRAIQGATSHHLGQNFSKMCEIVF 1212

Query: 303  KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN------- 353
            +     G+  +    S+G+   R +  ++    D  G++ P  VA  ++ +I        
Sbjct: 1213 EDPKTPGEKQFAYQCSWGLT-TRTIGVMVMVHGDNMGLVLPPRVASVQVVVIPCGITNAL 1271

Query: 354  IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +   +     C +   RL      V  D       G +F   +L G P+++ VG + + 
Sbjct: 1272 SEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMK 1331

Query: 413  DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              +     R TG +  ++ +E          + +
Sbjct: 1332 SCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQ 1365


>gi|327357537|gb|EGE86394.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 601

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 5/227 (2%)

Query: 3   RSKYFLPI--LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
            S ++ P   + + P   +  ++ L+++ G + Q   G++  LPLG +  + +  ++ + 
Sbjct: 8   LSAFWTPTGGIAKKPGSHD--ANYLLIQGGFLRQAYSGVFHMLPLGLRVQEKLERLVDKH 65

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA ++S+ ++ S  LW +SGR      E  +  DR +   +  PTHEE +T +   
Sbjct: 66  MRTLGASKLSLSSISSQALWEKSGRLKKDS-EFFKFQDRKEARFLLAPTHEEEITSLVAG 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD +PE +  +Y+ +  +
Sbjct: 125 AVNSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYTFDYSPETAIKTYSAVKKA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y+R+F  L +  +   A+SG +GG LSHEF +    GE  +      
Sbjct: 185 YIRLFDELRIPYMIATADSGNMGGSLSHEFHLPNPKGEDTIISCSSC 231



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 100/194 (51%), Gaps = 21/194 (10%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-----KGADGKD--------HYV 312
                  E+   +   IE+ H F+ GT+YS  ++A+         DG            +
Sbjct: 409 DRCSKCGEHTVQTHTAIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPL 468

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +MG +GIG  R+++AV ++  D KG+ WP ++APF++ +I     D+      E++Y  +
Sbjct: 469 EMGCHGIGVSRMISAVADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDI 524

Query: 373 --SKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRED 428
              ++G  DV  DD    I  +   ADL+G+P+ +++G  + +++K+E++  RL  +RE 
Sbjct: 525 NGRQIGAVDVIVDDRDRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRET 584

Query: 429 MSLEEVINYASHRF 442
           +SL+++  +     
Sbjct: 585 VSLQDLHPFTKSLL 598


>gi|218662034|ref|ZP_03517964.1| threonyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 305

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 104/316 (32%), Gaps = 35/316 (11%)

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +P    +  L  R E      G+MR R F   DA+ F  T E       K+    L ++ 
Sbjct: 1   MPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDLILSVYE 59

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G K I ++  + P     S      A+   T V  +                +  S  
Sbjct: 60  DFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKT---------------IEAQSEG 104

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG 304
            I         A      E         K    R  + G        ++LP    A +  
Sbjct: 105 RIKTGILPGEGAFYGPKFEYTL------KDAIGREWQCGTT---QVDFNLPERFGAFYID 155

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ++  K   V +     G+M     ++  +  G   +W   V+P ++ +  I +       
Sbjct: 156 SNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLW---VSPLQVVVATITS---EADA 209

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G +V  D   E+I  +     +   P+ ++ G K   +  V I+   +
Sbjct: 210 YGLEVAEALREAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAEERTVNIRRLGS 269

Query: 424 GIREDMSLEEVINYAS 439
             +  M L+  ++  +
Sbjct: 270 QDQVSMGLDAAVDSLT 285


>gi|154295615|ref|XP_001548242.1| hypothetical protein BC1G_13078 [Botryotinia fuckeliana B05.10]
 gi|150843958|gb|EDN19151.1| hypothetical protein BC1G_13078 [Botryotinia fuckeliana B05.10]
          Length = 442

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 135/411 (32%), Gaps = 69/411 (16%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--------- 99
               +   +  + +  G  E+  PT+    LW +SG +++Y ++M  +  R         
Sbjct: 1   MFKALTEFLSAQYSHFGFEEVITPTIYKKSLWEKSGHWENYAEDMYSVVGRGASGETIGG 60

Query: 100 ---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREF 155
               ++     P +      IF S  +SYR +P  +       R+E+     G+ R R F
Sbjct: 61  QKGENEEYGLKPMNCPGHCLIFASKQRSYREMPVRYTDFSPLHRNEISGALSGLTRVRRF 120

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              D + F   P       +        ++  LGL    +   + P   D         D
Sbjct: 121 HQDDGHIF-CRPSQIGKEISGTLEFVRMVYTTLGLGPYRLALSTRP--SDHYIGTKEEWD 177

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             ET +  S D    P                         A      +  L DS  +  
Sbjct: 178 NAETALKQSLDKSGQP-----------------WTMNEGDGAFYGPKIDVILKDSDGKEH 220

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSAT---------------FKGADGKDHYVQMGSYGIG 320
           + +   ++    F    ++ L   A                     G    V +    +G
Sbjct: 221 QTATIQLD----FQLPKRFELEYQAPAPEIEAKGETTDDPILLAKQGPVAPVLIHRAILG 276

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL-------- 372
           ++  + A++   ++G    WP  + P K+ ++ +   ++V      ++  +L        
Sbjct: 277 SVERMMALLIEHYNGH---WPFWLNPSKVIILTVNDSEEVVS-YANRVKMQLGQGAYHDS 332

Query: 373 ---SKVGCDV--FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              S+   +V    DD    +  + + A    F   +++G+K V ++ V +
Sbjct: 333 WPKSRHSIEVPIELDDSPRSVKKKISEAKRKRFGAIIVIGNKNVENNTVTV 383


>gi|313678253|ref|YP_004055993.1| proline--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950316|gb|ADR24911.1| proline--tRNA ligase [Mycoplasma bovis PG45]
          Length = 478

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 146/415 (35%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P      + +   +    N      + +P      L   E      +  E+  
Sbjct: 34  KGTMIFKPNSFGIWEQIQKALNGIFNSLKIQNVYLPLFIPDRLLAKEKEHIAGFNPELAT 93

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK     +   PT E +  D+F+  I S+++LP  + Q     R E +     +R
Sbjct: 94  ITKVGDKDLEQKIYVRPTSEVLFADLFKKMIVSHKDLPILYNQWANVVRWE-KTTNPFLR 152

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEF 210
           +REFL ++ ++   +   ++     M   Y +     L + +I        IG    +E 
Sbjct: 153 NREFLWQEGHTCHKSAIEARKLTRDMINVYAKFLKNYLAIPTI--------IGKKTPYEK 204

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A               + + +   D   + +  S                N+K  D 
Sbjct: 205 FAGA------------CSTYTVEAMMKDGKALQAGTSHYLAQNFSKKFEISFKNDKNED- 251

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                                                   +V   S+G+ + R++ A+I 
Sbjct: 252 ---------------------------------------EFVYQTSWGV-STRLLGAIIM 271

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +  D +GII P  VAP ++ ++ + A+ Q    D C+++  +L +    V  D   +  G
Sbjct: 272 THGDNRGIIIPPKVAPVQVDILELFANKQPRVHDFCQELVKQLERK-FRVRLDSTDKSPG 330

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + + +++ G PL++ VG K + +  V I  R T  +  + + EV +      + 
Sbjct: 331 YKASNSEIQGVPLRIEVGPKDLENKTVTIVRRDTLEKTIVDISEVKSKVRELLAQ 385


>gi|328724240|ref|XP_001946260.2| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Acyrthosiphon
            pisum]
          Length = 1657

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/469 (14%), Positives = 142/469 (30%), Gaps = 98/469 (20%)

Query: 2    RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAII--R 58
            + +K  L +L+ +    E  S +++++  MI  +   G Y   P   +  + +      R
Sbjct: 1117 KVTKLGLEVLKVSENLGEWYS-QVLVKGEMIEYYDVSGCYVLRPWAYRIWELIQEWFDAR 1175

Query: 59   EEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEV 113
             ++          P   S   L  E      +  E+  +    +    + +   PT E  
Sbjct: 1176 IKRKPLNIRNCYFPMFVSQGALEREKEHIADFAPEVAWVTKSGETDLAEPIAIRPTSETG 1235

Query: 114  MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
            M   F   I+SYR+LP    Q     R E +     +R+REFL ++              
Sbjct: 1236 MYPAFAKWIQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEG------------- 1282

Query: 174  YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                                              H      +  E  V  +  + ++   
Sbjct: 1283 ----------------------------------HNAYATREEAERDVLITLGYYEYVYK 1308

Query: 234  SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +               +     +  T + +                R I+     Y GT 
Sbjct: 1309 NMLAVPVIKGKKTEKEKFAGGIFTTTCEAYVASSG-----------RAIQGATSHYLGTN 1357

Query: 294  YSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++      F+  D  +  +V   S+G+   R +  ++    D +G++ P  +A  ++ ++
Sbjct: 1358 FAKMFDVHFEHPDTHEKSFVHQISFGMT-TRTIGVMVMVHGDDRGLVLPPRIASIQVIIV 1416

Query: 353  NIKAHDQVCRDA-------CEKIYARLS---------------------KVGCDVFWDDM 384
                      +        C  +  RL                       +      D  
Sbjct: 1417 PCGVGVSTANEVKDNLIRTCLDVCNRLKGDSLIETDDENDNSVIQHRNSSLMIRADTDLR 1476

Query: 385  -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 G +F   +L G PL++ +G K +  +++    R  G +  + LE
Sbjct: 1477 DNYSPGWKFNHWELKGVPLRLEIGPKDLDRNQMVAVRRDNGDKLTIPLE 1525


>gi|66267550|gb|AAH94679.1| Eprs protein [Mus musculus]
          Length = 1477

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/454 (14%), Positives = 137/454 (30%), Gaps = 78/454 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      +++      E  + G  
Sbjct: 981  LEAKKEENLAEWYS-QVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVE 1039

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHI 122
                P   S A L  E    + +  E+  +         + +   PT E VM   +   +
Sbjct: 1040 NCYFPIFVSQAALEKEKNHIEDFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 1099

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+LP    Q     R E +          FL    + +    +    ++     +  
Sbjct: 1100 QSHRDLPVRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAD 1149

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   L L +                                +      +    T+ +  
Sbjct: 1150 EVLQILELYAR----------------------------VYEELLAIPVVRGRKTEKEKF 1181

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +          A                    S R I+     + G  +S      F
Sbjct: 1182 AGGDYTTTIEAFISA--------------------SGRAIQGATSHHLGQNFSKMCEIVF 1221

Query: 303  KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN------- 353
            +     G+  +    S+G+   R +  ++    D  G++ P  VA  ++ +I        
Sbjct: 1222 EDPKTPGEKQFAYQCSWGLT-TRTIGVMVMVHGDSMGLVLPPRVASVQVVVIPCGITNAL 1280

Query: 354  IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +   +     C +   RL      V  D       G +F   +L G P+++ VG + + 
Sbjct: 1281 SEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMK 1340

Query: 413  DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              +     R TG +  ++ +E          + +
Sbjct: 1341 SCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQ 1374


>gi|195573301|ref|XP_002104632.1| Aats-glupro [Drosophila simulans]
 gi|194200559|gb|EDX14135.1| Aats-glupro [Drosophila simulans]
          Length = 996

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 133/434 (30%), Gaps = 72/434 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  MI  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 513 QVITKGEMIEYYDVSGCYILRHWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEK 572

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +    D    + +   PT E VM   +   ++SYR+LP    Q   
Sbjct: 573 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIWLNQWNY 632

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +R+REFL ++ ++     E +      +   Y  ++    L +IP+  
Sbjct: 633 VVRWEFMQPTPFLRTREFLWQEGHTAFADKEEAAKEVLDILDLYALVYTH--LLAIPV-- 688

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                         V     E + F   D+           F  +               
Sbjct: 689 --------------VKGRKTEKEKFAGGDYTTTV-----EAFISVSGRAIQGATSHHLGQ 729

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             S +      D   + K+                         ++ + G          
Sbjct: 730 NFSKMFEIVYEDPETQQKKY-----------------------VYQNSWG---------- 756

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYA 370
                R +  +I    D +G++ P  VA  +  ++     +   D       DAC+ +  
Sbjct: 757 --ITTRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEK 814

Query: 371 RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           RL   G     D       G +F   +L G PL++ VG K +   ++    R TG +  +
Sbjct: 815 RLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTGEKITI 874

Query: 430 SLEEVINYASHRFS 443
            L +V         
Sbjct: 875 PLADVEKKIPALLE 888


>gi|255548247|ref|XP_002515180.1| prolyl-tRNA synthetase, putative [Ricinus communis]
 gi|223545660|gb|EEF47164.1| prolyl-tRNA synthetase, putative [Ricinus communis]
          Length = 501

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 137/429 (31%), Gaps = 69/429 (16%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +   G Y   P      + +      E  +        P   S+  L  E    + 
Sbjct: 41  MIEYYDISGCYILRPWAMSIWEVMQTFFDAEIKKMKIKNCYFPLFVSSSVLEKEKDHIEG 100

Query: 89  YGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +           +   PT E VM   +   I+ +R+LP    Q     R E  
Sbjct: 101 FAPEVAWVTKSGKSDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 160

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +RSREFL ++ ++   T E +     ++   Y  I+      ++P+      + G
Sbjct: 161 NPTPFIRSREFLWQEGHTAFATKEEADEEVLQILELYRCIYEE--FLAVPV------VKG 212

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S          E + F    +              I    S             +  N
Sbjct: 213 KKS----------EREKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFEN 262

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           EK                E G ++     YS                           R 
Sbjct: 263 EKG---------------EKGMVWQNSWAYS--------------------------TRT 281

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFW 381
           +  ++    D KG++ P  VA  ++ +I +   D   Q   DAC +    L KVG     
Sbjct: 282 IGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACTETVDALCKVGIRAES 341

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +++  ++ G PL++ +G K +++++V    R    ++D+S   ++     
Sbjct: 342 DFRDNYSPGWKYSHWEVKGVPLRIEIGPKDLANNQVRTVRRDNATKKDISRVNLVEQVKE 401

Query: 441 RFSNNRPVL 449
                +  L
Sbjct: 402 ILDAIQQSL 410


>gi|146304669|ref|YP_001191985.1| prolyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|172046942|sp|A4YI09|SYP_METS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145702919|gb|ABP96061.1| prolyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 480

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 151/450 (33%), Gaps = 78/450 (17%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S  F          AEI  +             KG   W+P G K   NV  +IR+  
Sbjct: 7   KWSSNFSEWFDWVISQAEIYDYG--------RYPVKGSGVWMPYGFKIRQNVTTLIRKLL 58

Query: 62  NRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTD 116
           + TG  E+  P L    L   E+     + KE+  +     D  ++     PT E  +T 
Sbjct: 59  DETGHEEVLFPLLIPETLLKKEAEHIKGFEKEVFWVTHGGEDELEERFALRPTSEVAITL 118

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    IK Y  LP                       R+F                     
Sbjct: 119 MESLWIKGYSQLP-----------------------RKFYQ------------------- 136

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  I      ++   R            E   + +T E       + ++       
Sbjct: 137 -------IVSVFRYETKATRPMIRVRELSTFKEAHTVHETFEDAARQVDEAVEIYSK--- 186

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             F DI+ +  ++ +           +   L   +P+      R +++G   + G  ++ 
Sbjct: 187 --FFDILGIPYLISRRPEWDKFAGAEYTIALDTIMPDG-----RALQIGTAHHLGQHFTK 239

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M    + ADG   +    SYGI + RV+A VI  + D  G I P  VAP +  +I I  
Sbjct: 240 AMDYKVQRADGSHVHPHQTSYGI-SDRVIATVISINGDDHGPILPPVVAPIEGVIIPIPG 298

Query: 357 HDQ----VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFV 411
             +           ++ + L   G  V  D    +  G ++ + +L G P+++ +G + +
Sbjct: 299 KSEEDTEKINKYAMEVESVLKNSGIRVALDASEDKTPGEKYYIWELKGVPIRIEIGPREL 358

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +     +K R T   + +  EE++    + 
Sbjct: 359 NSGTAFLKRRDTLEGKSVKREELVKEFRNL 388


>gi|15827816|ref|NP_302079.1| prolyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221230293|ref|YP_002503709.1| prolyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|13633969|sp|Q9Z5I7|SYP_MYCLE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511607|sp|B8ZRT2|SYP_MYCLB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13093368|emb|CAC30504.1| prolyl tRNA synthetase [Mycobacterium leprae]
 gi|219933400|emb|CAR71648.1| prolyl tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 480

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 149/437 (34%), Gaps = 71/437 (16%)

Query: 23  HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++++ + G+I +  +KG     P G +  + +   +  +    G      P L   + + 
Sbjct: 20  NEVVAKAGLIDRGPAKGTMVIRPYGYRIWELLQDELDSKIKELGHENAYFPMLIPENYFN 79

Query: 81  VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+   + +  E+  +     K +    +  PT E V+ D+    I S+R+LP    Q  
Sbjct: 80  REAEHVEGFHPELAVVTHAGGKELSEPLVIRPTSETVIGDMMAKWITSHRDLPLRLNQWS 139

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R ELRPR  ++R+ EFL ++ +S  +    +        +  L I+  L   +  M 
Sbjct: 140 NVVRWELRPRM-LLRTIEFLWQEGHSAHIEKSDALRET----LFALDIYTTL---ARDMA 191

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A     G   + E    A    T    +       + S  T +       +   ++T   
Sbjct: 192 AIPIVSGEKTAGERFAGALN--TYTIEAMMRDGKALQSATTHYLGDNFARAFNIRYTTAE 249

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              + VH                        F   T+                       
Sbjct: 250 EQQAFVHT---------------------TSFGLSTR----------------------- 265

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSK 374
                  ++ A++    D KG++ P  VAP+++ ++ I   ++      A   +  RL  
Sbjct: 266 -------MIGAIVMVHGDDKGLVLPPQVAPYQVVIVPITTGNKASEVGHAAADLARRLQA 318

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLE 432
            G     D   +   G ++   +L G P+++ +G + +     V ++      ++ +++ 
Sbjct: 319 AGVRTHVDARPQLTPGWKYNEWELRGVPIRLELGPRDLEAGTTVMVRRIGEKAKQPIAIA 378

Query: 433 EVINYASHRFSNNRPVL 449
                        +  L
Sbjct: 379 AAPTELPGILEEFQRTL 395


>gi|296284112|ref|ZP_06862110.1| prolyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 533

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 137/412 (33%), Gaps = 87/412 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG      P     ++   E+   + + KEM  +
Sbjct: 56  GCMVIKPWGYGIWERIQRLLDDRIKATGHDNAYFPLFIPLSNFEREADHVEGFAKEMAVV 115

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E ++ D     ++S+R+LP    Q     
Sbjct: 116 THHRLIADGKGGLIPDPEAKLEEPLVVRPTSETIIGDAMARWVQSWRDLPLKLNQWANVV 175

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R   +R+ EFL ++ ++   TPE +K       ++ L ++              
Sbjct: 176 RWEMRTRM-FLRTSEFLWQEGHTAHATPEEAKD----HTLTMLEVY-------------- 216

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +  D     ++  +  E + F                                     
Sbjct: 217 RAMAEDDLALPVIAGEKPEHERFPGAVETWSIEA-------------------------- 250

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G   Y GT ++      ++  +G + +    S+G+
Sbjct: 251 ---------------MMQDGKALQAGTSHYLGTNFAKASGIKYQAQEGGEQFAHTTSWGV 295

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARL---S 373
            + R++  +I +  D  G+  P  +AP+++ ++ +      D    + CE + A L    
Sbjct: 296 -STRLIGGIIMTHGDDDGLRVPPKLAPWQVVILPMLRGNDDDAALIEYCEGLRATLAGQQ 354

Query: 374 KVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            +G    V  D    +   +       G P+ V VG + + +  V +  R  
Sbjct: 355 ALGEPVRVLLDTKPGKPAQKRWDWVRKGAPVIVEVGGRDMENGVVTLIRRDN 406


>gi|72080721|ref|YP_287779.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
 gi|114152215|sp|Q4A7Y3|SYP_MYCH7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71913845|gb|AAZ53756.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 479

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 139/419 (33%), Gaps = 67/419 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLR 95
           KG   + PLG K  +N+  I+     +     +  P L   D    E    + +  E+L 
Sbjct: 34  KGTIYFKPLGYKIWENIVKIVNAYFVKQKIENVYFPLLIPQDFIEKEKKHIEGFAPELLT 93

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D    + +   PT E +  D F++ I     LP    Q     R E +     +R
Sbjct: 94  ITKVGDKNLVENIYIRPTSELLFADYFKAEIAKNNILPIKLNQWSQVLRWE-KTTNPFLR 152

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EFL ++ ++   +    K   N+      R +       + +   SG           
Sbjct: 153 NTEFLWQEGHTIHAS----KVEANQFAKKIARFYKYFLENYLAIPVISG----------- 197

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E + F                                                 
Sbjct: 198 ---QKTEREKFAGAVNTYTVEA-------------------------------------- 216

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + R ++     + G  ++      +K  + K       S+G+ + R++ A++  
Sbjct: 217 ---MMQNFRALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMV 272

Query: 332 SHDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D  G+I+P  +AP ++ ++      +Q  +   ++I   L         DD  +QIG 
Sbjct: 273 HSDDNGLIFPPKIAPIQVDILEFFSKKNQEVKIFAKRIAKILKNAKIAYKIDDTDQQIGY 332

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +   +++ G P+++ +G   V ++++ +  R    +   +++ +           +  L
Sbjct: 333 KINNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILEQIQADL 391


>gi|302542211|ref|ZP_07294553.1| proline-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459829|gb|EFL22922.1| proline-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 471

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 145/453 (32%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ F    Q+    AE+A +  +  T +I           P G    + +   +     
Sbjct: 10  RAEDFPRWYQDVINKAELAENGPVRGTMVIR----------PYGYGLWERMQGDLDARIK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             G      P       L  E+   + +  E+  +        ++ ++  PT E ++ + 
Sbjct: 60  AVGVQNAYFPLFIPQSYLTREAEHVEGFAPELAVVTHGGGKELEEPVVVRPTSETIVNEY 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++SYR+LP    Q     R E       +R R FL                     
Sbjct: 120 FSKWVQSYRDLPLLINQWANVVRWE-------LRPRLFLRTT------------------ 154

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                          EF  L   G T     +D  +F       
Sbjct: 155 -------------------------------EF--LWQEGHTAHATYEDAREFAARIHRD 181

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            + D +     ++       A              E      + +++G     G  ++  
Sbjct: 182 VYADFMENVLAMDVVLGRKTARERFAGAVN-TLTLEGMMGDGKALQLGTSHELGQNFARA 240

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  +   DG+   V   S+G    R+V A++    D  G+  P  +AP +  ++ +K  
Sbjct: 241 FNTRYLSRDGEQELVWQTSWG-STTRMVGALVMMHGDDDGLRLPPRLAPVQAVVLAVK-G 298

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D     A  +   RL+  G  V  DD  +   G +    +L G P++V +G + +     
Sbjct: 299 DDAVLAAVRETGDRLAAAGVRVQVDDRTDMPFGRRAVDWELRGVPVRVEIGPRDLEAGTA 358

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R+ G +E +  + V          ++ +L
Sbjct: 359 TLARRIPGGKEPVRTDLVAETVPKALEEDQALL 391


>gi|194910075|ref|XP_001982069.1| GG12386 [Drosophila erecta]
 gi|190656707|gb|EDV53939.1| GG12386 [Drosophila erecta]
          Length = 1712

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 132/435 (30%), Gaps = 74/435 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ +  MI  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 1229 QVITKGEMIEYYDVSGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEK 1288

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    D    + +   PT E VM   +   ++SYR+LP    Q   
Sbjct: 1289 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNN 1348

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +          FL    + +    +    ++     +   +   L L       
Sbjct: 1349 VVRWEFKQPTP------FLRTREFLW----QEGHTAFADKEEAAKEVLDILDL------- 1391

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                   +  +       +    T+ +     +          A
Sbjct: 1392 ---------------------YALVYTHLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA 1430

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                                S R I+     + G  +S      ++  +  +  YV   S
Sbjct: 1431 --------------------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNS 1470

Query: 317  YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIY 369
            +GI   R +  +I    D +G++ P  VA  +  ++     +   D       DAC+ + 
Sbjct: 1471 WGIT-TRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKDLE 1529

Query: 370  ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             RL   G     D       G +F   +L G PL++ VG K +   ++    R TG +  
Sbjct: 1530 KRLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAKQLVAVRRDTGEKIT 1589

Query: 429  MSLEEVINYASHRFS 443
            + L +V    +    
Sbjct: 1590 IPLADVEKKIAALLE 1604


>gi|151944803|gb|EDN63062.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190405650|gb|EDV08917.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|259146006|emb|CAY79266.1| EC1118_1E8_2102p [Saccharomyces cerevisiae EC1118]
          Length = 576

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 6/258 (2%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWV 81
            +L+   G + +   G++ WLPLG ++L+ V+  IR   +  G AIE+S+  + S  LW 
Sbjct: 30  QELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRMDSDGGAIEVSLSAISSKALWQ 89

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + R+++   E+ +L D   K      T EE +TD+ +++I SY+++P T YQ+  K+RD
Sbjct: 90  ATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIASYKDMPITIYQMTRKYRD 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+SG 
Sbjct: 148 EIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADSGD 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG+ S EF ++ ++GE  +   K   D      +  + +     S              
Sbjct: 208 IGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALT---K 264

Query: 262 VHNEKLFDSLPENKRVSA 279
            H+  +    P++++++ 
Sbjct: 265 DHSTLICFYYPKDRQLNW 282



 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 215 DTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +  SK    MD  + S++   D  +              +  D    ++     
Sbjct: 310 EKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGKCE 369

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIES 331
           E +    + IEVGHIF  G KYS P++  F   + K+     MG YGIG  R+V A+ E 
Sbjct: 370 EGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVGAIAEL 429

Query: 332 SHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQ 387
             D  G  WP  +AP+K+S+    N   + Q  +D   K+    +     +   D   E+
Sbjct: 430 GRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQNLQNDILDQFNEK 489

Query: 388 --IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             IG++  ++  +G PL VIVGSK   + ++EI+    G +
Sbjct: 490 LGIGARIKLSHAMGIPLCVIVGSKSWPNVEIEIRGIRWGEK 530


>gi|6320931|ref|NP_011010.1| Aim10p [Saccharomyces cerevisiae S288c]
 gi|731489|sp|P39965|SYPM_YEAST RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Altered inheritance rate of mitochondria
           protein 10; AltName: Full=Proline--tRNA ligase;
           Short=ProRS
 gi|603325|gb|AAB64642.1| Yer087wp [Saccharomyces cerevisiae]
 gi|285811719|tpg|DAA07747.1| TPA: Aim10p [Saccharomyces cerevisiae S288c]
          Length = 576

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 6/258 (2%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWV 81
            +L+   G + +   G++ WLPLG ++L+ V+  IR   +  G AIE+S+  + S  LW 
Sbjct: 30  QELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRMDSDGGAIEVSLSAISSKALWQ 89

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + R+++   E+ +L D   K      T EE +TD+ +++I SY+++P T YQ+  K+RD
Sbjct: 90  ATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIASYKDMPITIYQMTRKYRD 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+SG 
Sbjct: 148 EIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADSGD 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG+ S EF ++ ++GE  +   K   D      +  + +     S              
Sbjct: 208 IGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALT---K 264

Query: 262 VHNEKLFDSLPENKRVSA 279
            H+  +    P++++++ 
Sbjct: 265 DHSTLICFYYPKDRQLNW 282



 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 215 DTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +  SK    MD  + S++   D  +              +  D    ++     
Sbjct: 310 EKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGKCE 369

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIES 331
           E +    + IEVGHIF  G KYS P++  F   + K+     MG YGIG  R+V A+ E 
Sbjct: 370 EGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVGAIAEL 429

Query: 332 SHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQ 387
             D  G  WP  +AP+K+S+    N   + Q  +D   ++    +     +   D   E+
Sbjct: 430 GRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSELLNDPTMQNLQNDILDQFNEK 489

Query: 388 --IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             IG++  ++  +G PL VIVGSK   + ++E++    G +
Sbjct: 490 LGIGARIKLSHAMGIPLCVIVGSKSWPNVEIEVRGIRWGEK 530


>gi|46202001|ref|ZP_00053978.2| COG0442: Prolyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 500

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 146/436 (33%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    +++   +      TG      P     + L  E+   + + KEM  +
Sbjct: 38  GCMVIKPWGYGIWESIQRDLDRRIKETGHENCYFPLFIPLSFLEKEAAHVEGFAKEMAVV 97

Query: 97  ADRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++ ++  PT E ++ D F   I+SYR+LP    Q     R E
Sbjct: 98  THHRLVAEDGKLVPSGKLEEPLVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWE 157

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPR   +R+ EFL ++ ++   T E +     +M    L ++  +  +   + A    +
Sbjct: 158 MRPRI-FLRTAEFLWQEGHTAHATAEEAMEETLRM----LEVYRVMSEE---VLAMPVIV 209

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           G   +HE       G  + +  +                                     
Sbjct: 210 GEKPAHERF----PGADKTYSIEAM----------------------------------- 230

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                            + ++ G   + G  +S   +  ++ A G + +    S+G+ + 
Sbjct: 231 -------------MQDGKALQAGTSHFLGQHFSKAQNIRYQTAQGGEEFCFTTSWGV-ST 276

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKV---- 375
           R++  VI S  D  G+  P  +AP +I  + I   D    +  +    +   LS      
Sbjct: 277 RLIGGVIMSHADDNGLRVPPRIAPKQIVFVPITRADGDEALIDEFLAPVVKELSAQSFGG 336

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEE 433
               V  D        +       G P+   VG + V+   + +  R   ++  +   +E
Sbjct: 337 ERLRVHVDRRPLAPPEKRWEWVKKGAPIICEVGPRDVAGGTIAMIRRDGELKGQITPKDE 396

Query: 434 VINYASHRFSNNRPVL 449
            +  A+   ++ +  L
Sbjct: 397 FVARAASILADIQNSL 412


>gi|295094342|emb|CBK83433.1| prolyl-tRNA synthetase, family I [Coprococcus sp. ART55/1]
          Length = 477

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 142/420 (33%), Gaps = 61/420 (14%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           +L+ G+I   + KG  +  P G    + +   + E    TG   + +P L    L   E 
Sbjct: 26  VLKAGLIAYTNVKGCMAIKPAGYAIWELIQKQLDERFKATGVENVYMPMLIPESLLEKEK 85

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              + +  E+  +           P  E                            R  +
Sbjct: 86  DHVEGFAPEVAWVT-----YGGLNPLTE----------------------------RMCV 112

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP      + E L  D Y  D+            +    R++++        + E+ P  
Sbjct: 113 RP------TSETLFCDFYKNDIQS----------YRDLPRVYNQWCSVMRWEK-ETRPFL 155

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              S EF+              +     + +   DF + +    ++          +   
Sbjct: 156 R--SREFLWQEGHTAHATAEEAEARTIQMLNLYADFCEDVLAMPVIRGRKTEKEKFAGAE 213

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                ++L  +     + ++ G    FG  ++      F   D K  YV   S+G+   R
Sbjct: 214 ATYTIEALMHDG----KALQSGTSHNFGDGFAKAFGIQFTDKDNKLKYVHQTSWGMT-TR 268

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A+I    D  G++ P  VAP ++ +I I        +   ++  +L      V  DD
Sbjct: 269 LIGAIIMVHGDNSGLVLPPKVAPTQVMIIPIMQKKAGVLEKAAELREKLGA--FRVKVDD 326

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +  G +F+  ++ G P++V +G K +  ++  +  R T  +  +SL+E+         
Sbjct: 327 SDKSPGWKFSEQEMRGIPIRVEIGPKDIEANQAVLVRRDTREKITVSLDEIDTKVGELLE 386


>gi|256271449|gb|EEU06503.1| YER087W-like protein [Saccharomyces cerevisiae JAY291]
          Length = 576

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 6/258 (2%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWV 81
            +L+   G + +   G++ WLPLG ++L+ V+  IR   +  G AIE+S+  + S  LW 
Sbjct: 30  QELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRMDSDGGAIEVSLSAISSKALWQ 89

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + R+++   E+ +L D   K      T EE +TD+ +++I SY+++P T YQ+  K+RD
Sbjct: 90  ATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIASYKDMPITIYQMTRKYRD 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+SG 
Sbjct: 148 EIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADSGD 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG+ S EF ++ ++GE  +   K   D      +  + +     S              
Sbjct: 208 IGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALT---K 264

Query: 262 VHNEKLFDSLPENKRVSA 279
            H+  +    P++++++ 
Sbjct: 265 DHSTLICFYYPKDRQLNW 282



 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 215 DTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +  SK    MD  + S++   D  +              +  D    ++     
Sbjct: 310 EKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGKCE 369

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIES 331
           E +    + IEVGHIF  G KYS P++  F   + K+     MG YGIG  R+V A+ E 
Sbjct: 370 EGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVGAIAEL 429

Query: 332 SHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQ 387
             D  G  WP  +AP+K+S+    N   + Q  +D   K+    +     +   D   E+
Sbjct: 430 GRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQNLQNDILDQFNEK 489

Query: 388 --IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             IG++  ++  +G PL VI+GSK   + ++EI+    G +
Sbjct: 490 LGIGARIKLSHAMGIPLCVIIGSKSWPNVEIEIRGIRWGEK 530


>gi|157867949|ref|XP_001682528.1| bifunctional aminoacyl-trna synthetase; prolyl-trna synthetase
           [Leishmania major strain Friedlin]
 gi|68125982|emb|CAJ04056.1| putative prolyl-tRNA synthetase [Leishmania major strain Friedlin]
          Length = 731

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 139/421 (33%), Gaps = 71/421 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + +  MI  +   G Y   P        V   +  +  + G  +   P   S   L  E 
Sbjct: 240 ITKAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRSCLEREK 299

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I+S+R+LP          
Sbjct: 300 DHIEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVI 359

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       +R+REFL ++ +      E       ++   Y  ++ +  L ++P+    
Sbjct: 360 RWEFSHPTPFIRTREFLWQEGHCAWAKAEECAKEVLEILECYASVYEQ--LLAVPV---- 413

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                       V     E + F                  D  +      +        
Sbjct: 414 ------------VRGRKTEKEKFAG---------------GDYTTTVETFIEAVGRGCQG 446

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  HN                         F  ++  P +      + +       S+G+
Sbjct: 447 ATSHNLGQNFGKM-----------------FDIRFQDPEN------NEQTLIPWQNSWGL 483

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARL 372
            + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L
Sbjct: 484 -STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQELLASCWRLESEL 542

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  ++ 
Sbjct: 543 CEGGVRARCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVAW 602

Query: 432 E 432
           +
Sbjct: 603 D 603


>gi|157867947|ref|XP_001682527.1| bifunctional aminoacyl-trna synthetase; prolyl-trna synthetase
           [Leishmania major strain Friedlin]
 gi|68125981|emb|CAJ04054.1| putative prolyl-tRNA synthetase [Leishmania major strain Friedlin]
          Length = 731

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 139/421 (33%), Gaps = 71/421 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + +  MI  +   G Y   P        V   +  +  + G  +   P   S   L  E 
Sbjct: 240 ITKAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRSCLEREK 299

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I+S+R+LP          
Sbjct: 300 DHIEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVI 359

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       +R+REFL ++ +      E       ++   Y  ++ +  L ++P+    
Sbjct: 360 RWEFSHPTPFIRTREFLWQEGHCAWAKAEECAKEVLEILECYASVYEQ--LLAVPV---- 413

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                       V     E + F                  D  +      +        
Sbjct: 414 ------------VRGRKTEKEKFAG---------------GDYTTTVETFIEAVGRGCQG 446

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  HN                         F  ++  P +      + +       S+G+
Sbjct: 447 ATSHNLGQNFGKM-----------------FDIRFQDPEN------NEQTLIPWQNSWGL 483

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARL 372
            + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L
Sbjct: 484 -STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQELLASCWRLESEL 542

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  ++ 
Sbjct: 543 CEGGVRARCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVAW 602

Query: 432 E 432
           +
Sbjct: 603 D 603


>gi|16081983|ref|NP_394395.1| prolyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|74581452|sp|Q9HJN0|SYP_THEAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|10640252|emb|CAC12066.1| prolyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 462

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 142/421 (33%), Gaps = 69/421 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGK 91
               KG+  WLP G K +  +++I+R   ++    E++ P L     L VE      +  
Sbjct: 25  RYPVKGMNVWLPYGWKIMSLIDSIVRRAVDKRNFQEVNFPILIGRSMLEVEFEHIRGFEN 84

Query: 92  EMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +     ++ ++ +   PT E  M  +F   I+S+ +LP   YQI   +R E +   
Sbjct: 85  EIYWVTKGGKEKLEEELALRPTSESAMYPMFSLWIRSHADLPLKIYQIVSVYRYETKH-- 142

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
               +R F+      F                                            
Sbjct: 143 ----TRSFIRIREIHF-------------------------------------------- 154

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      T E        + +             +            +           
Sbjct: 155 FEAHTAHATYEDAEAQMDQYKEI------WREISSLLCLPYFYDQRPDWDKFPGAMYTIA 208

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD++      S R +++G I  +GT +S      +   DG   Y    +YG+ + R++AA
Sbjct: 209 FDTV----LPSGRSLQIGTIHQYGTNFSKNYDIKYLKEDGTFDYAHQTTYGM-SERLLAA 263

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
           +I    D KG++ P  VA   I +I I        +    +   L+ +   V  DD    
Sbjct: 264 IIGIHGDDKGLVLPPDVA--PIQVIIIPIPGAGVMEYARDVENTLNSINIRVKVDDRENY 321

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             G +F   ++ G PL++ +G + V +  + I  R    +  +   ++I          R
Sbjct: 322 TPGYKFNDWEMRGVPLRIEIGEREVKNRTLTISMRNIQGKLTIERSKLIYEVPDTLIRIR 381

Query: 447 P 447
            
Sbjct: 382 E 382


>gi|318061953|ref|ZP_07980674.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actG]
          Length = 407

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 131/433 (30%), Gaps = 51/433 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           RD +   H+L    G+         G+   LP G      +   +R  +   G   +  P
Sbjct: 8   RDHD--HHRLGRALGLYGTDPLLGAGLPYLLPDGASVRHALEEYVRGLEVADGYQHVHSP 65

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L   +L+V SG +  Y  +M    +   +  +  P+       I+R+  +SYR LP   
Sbjct: 66  VLGKQELYVRSGHWAHYRADMFPPMEVGGEHFVLRPSLCPHHALIYRAQARSYRELPLRI 125

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++   FR E      G+ R R   + DA+ F   PE                +  LGL 
Sbjct: 126 AELGGMFRAEPSGTLGGLTRVRAIHLNDAHLFCA-PESLAGEVAGALALIRTAYRALGLA 184

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               R                    GE   +   + +     +   +      L+   E+
Sbjct: 185 PSRYRLSL----------------PGEDAKYALAEGVWERSAAALAEALAGAGLD--WEE 226

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                A      + +  D+      +S    +      FG  Y           DG +  
Sbjct: 227 ERGEAAFYGPKIDVQARDAAGREFTLSTVQADFHQPTAFGLDYRAA--------DGSRPR 278

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  V A +   H G    W           + +    +   +A E    
Sbjct: 279 PVMVHRSVLGSLERVLARLIEVHGGAFPAWLAP------VQVGVVPVGEEQEEAAESFVR 332

Query: 371 RLSKVGCDVFWDDMGE-----QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           R    G                + ++   A L   P   ++G++  +  +V ++ R    
Sbjct: 333 RCRAAGLRA----RRYPAHAGTLAARVRQARL--VPHLAVLGAREAAAGEVALRRRDGER 386

Query: 426 REDMSLEEVINYA 438
                  E +   
Sbjct: 387 LPARPEAEAVALL 399


>gi|224014080|ref|XP_002296703.1| prolyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220968558|gb|EED86904.1| prolyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 521

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 127/420 (30%), Gaps = 68/420 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   K  + +      +  + G      P   S D L  E    + +  E+  
Sbjct: 59  SGCYILRPWSYKIWELIQDWFNIQIKKLGVENSYFPMFVSQDRLEKEKDHVEGFAPEVAW 118

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D    + +   PT E +M   F   I+S+R+LP    Q     R E +       
Sbjct: 119 VTRSGDGELAQPIAVRPTSETIMYPAFADWIRSHRDLPLKLNQWSNVVRWEFK------- 171

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  D   F  T E      +    SY                           + +
Sbjct: 172 -------DPTPFLRTREFLWQEGHTAHASYED------------------------ADVM 200

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V+      +    +      IP   T+ +     +                         
Sbjct: 201 VMQALDLYRRVYEELLAIPVIPGYKTEKEKFAGGHQTTTVEAYI---------------- 244

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                VS R I+          +       ++   G+       S+G+   R +  +I  
Sbjct: 245 ----PVSGRAIQGATSHNLWQNFGKMFDINYQDEKGETKIAWQTSWGLT-TRTIGVMIMV 299

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D  G++ P  VAP +  +I I +     +     CE I   L + G     DD     
Sbjct: 300 HGDDTGLVLPPMVAPQQAVIIPIVSKSCPLENLSGYCEDILKSLEEKGIRAKLDDRLIYN 359

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            G ++A  +  G P+++ VG + +   +  +  R  G + D+S++ + +    +    + 
Sbjct: 360 PGWKYAHWEQKGVPIRIEVGPRDLEKRQARMVVRFGGEKIDVSVDTIASDIEKKLKEVQA 419


>gi|4455680|emb|CAB36573.1| putative prolyl tRNA synthetase [Mycobacterium leprae]
          Length = 473

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 149/437 (34%), Gaps = 71/437 (16%)

Query: 23  HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           ++++ + G+I +  +KG     P G +  + +   +  +    G      P L   + + 
Sbjct: 13  NEVVAKAGLIDRGPAKGTMVIRPYGYRIWELLQDELDSKIKELGHENAYFPMLIPENYFN 72

Query: 81  VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+   + +  E+  +     K +    +  PT E V+ D+    I S+R+LP    Q  
Sbjct: 73  REAEHVEGFHPELAVVTHAGGKELSEPLVIRPTSETVIGDMMAKWITSHRDLPLRLNQWS 132

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R ELRPR  ++R+ EFL ++ +S  +    +        +  L I+  L   +  M 
Sbjct: 133 NVVRWELRPRM-LLRTIEFLWQEGHSAHIEKSDALRET----LFALDIYTTL---ARDMA 184

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A     G   + E    A    T    +       + S  T +       +   ++T   
Sbjct: 185 AIPIVSGEKTAGERFAGALN--TYTIEAMMRDGKALQSATTHYLGDNFARAFNIRYTTAE 242

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              + VH                        F   T+                       
Sbjct: 243 EQQAFVHT---------------------TSFGLSTR----------------------- 258

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSK 374
                  ++ A++    D KG++ P  VAP+++ ++ I   ++      A   +  RL  
Sbjct: 259 -------MIGAIVMVHGDDKGLVLPPQVAPYQVVIVPITTGNKASEVGHAAADLARRLQA 311

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLE 432
            G     D   +   G ++   +L G P+++ +G + +     V ++      ++ +++ 
Sbjct: 312 AGVRTHVDARPQLTPGWKYNEWELRGVPIRLELGPRDLEAGTTVMVRRIGEKAKQPIAIA 371

Query: 433 EVINYASHRFSNNRPVL 449
                        +  L
Sbjct: 372 AAPTELPGILEEFQRTL 388


>gi|163814965|ref|ZP_02206352.1| hypothetical protein COPEUT_01115 [Coprococcus eutactus ATCC 27759]
 gi|158449648|gb|EDP26643.1| hypothetical protein COPEUT_01115 [Coprococcus eutactus ATCC 27759]
          Length = 477

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 139/420 (33%), Gaps = 61/420 (14%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           +L+ G+I   + KG  +  P G    + +   + E    TG   + +P L    L   E 
Sbjct: 26  VLKAGLIAYTNVKGCMAIKPAGYAIWELIQKQLDERFKATGVENVYMPMLIPESLLEKEK 85

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              + +  E+  +           P  E                            R  +
Sbjct: 86  DHVEGFAPEVAWVT-----YGGLNPLTE----------------------------RMCV 112

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP      + E L  D Y  D+            +    +++++        + E+ P  
Sbjct: 113 RP------TSETLFCDFYKNDIQS----------YRDLPKVYNQWCSVMRWEK-ETRPFL 155

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              S EF  L   G T    +++     I   N         + +            +  
Sbjct: 156 R--SREF--LWQEGHTAHATAEEAEARTIQMLN--LYADFCEDVLAMPVIRGQKTEKEKF 209

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                    E      + ++ G    FG  ++      F   D K  YV   S+G+   R
Sbjct: 210 AGAEATYTIEALMHDGKALQSGTSHNFGDGFAKAFGIQFTDKDNKLKYVHQTSWGMT-TR 268

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A+I    D  G++ P  VAP ++ +I I        +   ++  +L      V  DD
Sbjct: 269 LIGAIIMVHGDNSGLVLPPKVAPTQVMIIPIMQKKAGVLEKAAELREKLGA--FRVKVDD 326

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +  G +F+  ++ G P++V +G K +  ++  +  R T  +  +SL+E+         
Sbjct: 327 SDKSPGWKFSEQEMRGIPIRVEIGPKDIEANQAVLVRRDTREKITVSLDEIDAKVGELLE 386


>gi|297661955|ref|XP_002809493.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Pongo abelii]
          Length = 1462

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/460 (16%), Positives = 141/460 (30%), Gaps = 82/460 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +      E  + G    
Sbjct: 962  EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1021

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTD-IFRSHIK 123
              P   S   L  E      +  E+  +         + +   PT E VM   +++  ++
Sbjct: 1022 YFPMFVSQSALEKEKTHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPGVWQKWVQ 1081

Query: 124  SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            S+R+LP    Q     R E +     +R+REFL ++ +S   T          M  +   
Sbjct: 1082 SHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT----------MEEAAEE 1131

Query: 184  IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   L L    +  E   I                             +    T+ +   
Sbjct: 1132 VLQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFA 1163

Query: 244  SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +          A                    S R I+ G   + G  +S      F+
Sbjct: 1164 GGDYTTTIEAFISA--------------------SGRAIQGGTSHHLGQNFSKMFEIVFE 1203

Query: 304  GAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------- 353
                 G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I         
Sbjct: 1204 DPKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITKCTF 1262

Query: 354  IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLG---FPLQVIVGSK 409
            +K   +     C     RL  V   V  D       G +F      G    P+++ VG +
Sbjct: 1263 LKKTKKPLIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWGAQGKFLIPIRLEVGPR 1322

Query: 410  FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +   +     R TG +  ++  E          + +  L
Sbjct: 1323 DMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTL 1362


>gi|295704482|ref|YP_003597557.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294802141|gb|ADF39207.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 296

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 108/321 (33%), Gaps = 36/321 (11%)

Query: 17  DAEIASHKLM---LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           +AE  +H+ +   L   M  + + G+  +LP G    + +    +++  + G  E+  P 
Sbjct: 6   EAEKRNHQKLGQELELFMSMEEAPGMPFFLPNGMIVRNELENYWKQKHYKAGYQEIKTPI 65

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +   +LW +SG ++ Y + M   ++ + +     P +      +F S  +SYR LP  + 
Sbjct: 66  MMKQELWEQSGHWEHYHENMY-FSNVDKQNYAIKPMNCPGAILLFNSKRRSYRELPVRYA 124

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ L  R EL     G++R R F   DA+ F +     +   +++       +   G   
Sbjct: 125 ELGLVHRHELSGSLNGLLRVRSFTQDDAHLF-VELSQIEAEISRILAFIHDFYSHFGFDY 183

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +   + P       E    A+     V   K         +   +   I  + +    
Sbjct: 184 -KVELSTRPEKFMGDIETWNQAEKSLQSVLIEKGLDYQVNEGDGAFYGPKIDFHILD--- 239

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-Y 311
                                      R  + G +              + G D K H  
Sbjct: 240 ------------------------SLGRSWQCGTV-QLDFLMPEKFDCMYIGEDNKPHRP 274

Query: 312 VQMGSYGIGAMRVVAAVIESS 332
           V +     G++    A++   
Sbjct: 275 VMIHRAIYGSVERFMAILIEQ 295


>gi|67523387|ref|XP_659754.1| hypothetical protein AN2150.2 [Aspergillus nidulans FGSC A4]
 gi|40745038|gb|EAA64194.1| hypothetical protein AN2150.2 [Aspergillus nidulans FGSC A4]
 gi|259487529|tpe|CBF86275.1| TPA: prolyl-tRNA synthetase (AFU_orthologue; AFUA_2G16010)
           [Aspergillus nidulans FGSC A4]
          Length = 594

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 136/429 (31%), Gaps = 70/429 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G Y   P      + +     +   + G    S P   S D L 
Sbjct: 95  QQVLTKGDMLDYYDVSGCYILKPASYSIWEEIQQWFNQRIKKIGVKNCSFPLFVSEDVLQ 154

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 155 REKDHIEGFAAEVAWVTHAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 214

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +      +   Y +I+    L ++P+ 
Sbjct: 215 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTKEAAHEEVMYILDLYAQIYEE--LLAVPV- 271

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F    +              I    S         
Sbjct: 272 ---------------VKGQKTEKEKFAGGLYTTTVEGYIPATGRGIQGGTSHGLGQNFSK 316

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                V +        +            H++                           S
Sbjct: 317 MFNITVEDPSAKGDEKKPPL---------HVWQ-------------------------NS 342

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACE--KIY 369
           +G+ + R +  ++    D  G++ P  VA  ++ ++ +        +   +   E  KI 
Sbjct: 343 WGL-STRTLGVMVMIHSDDNGLVLPPRVAENQVVVVPVGITAKLTEEDRAKLYAEVDKIT 401

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGI 425
             L+  G     D   G   G +F   +L G PL++  G    + + V    R       
Sbjct: 402 ETLTAAGVRAISDKREGYSPGWKFNEWELRGVPLRIEFGPGESAGNFVSTARRDIPGKDG 461

Query: 426 REDMSLEEV 434
           +  + + E+
Sbjct: 462 KGTIPIPEL 470


>gi|330935397|ref|XP_003304947.1| hypothetical protein PTT_17681 [Pyrenophora teres f. teres 0-1]
 gi|311318137|gb|EFQ86884.1| hypothetical protein PTT_17681 [Pyrenophora teres f. teres 0-1]
          Length = 562

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 148/443 (33%), Gaps = 71/443 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  MI  +   G Y   P      +N+      +           P   SAD L 
Sbjct: 63  QQVITKGQMISYYDVAGCYILEPSSYAIWENIKTWFDAQIKTLKVRNAYFPIFISADNLE 122

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E  M   F   I+S+R+LP    Q  
Sbjct: 123 REKEHVEGFAAEVAWVTKGGKSDLEKPIAVRPTSETAMYPYFARKIQSHRDLPLKLNQWN 182

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +RSREFL ++ ++  LT E +     ++   Y  ++    L ++P+ 
Sbjct: 183 NVVRWEFKHPMPFIRSREFLWQEGHTAHLTREEASAEVLQILDWYSDVYQ--NLLAVPVV 240

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G    +E    AD   T        ++  IP+         S            
Sbjct: 241 K-----GTKTVNEKFPGADYTTT--------IEGFIPATGRGIQAATSHCLGQHFSKMFN 287

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               D   ++   S               H+                        V   S
Sbjct: 288 ITVEDPTAKEAGKSE--------------HVH-----------------------VWQNS 310

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY------- 369
           +G+   R +  +I +  D +G++ P  VA  ++ +I +    ++  +A E++Y       
Sbjct: 311 WGLT-TRSIGVMILTHGDNRGLVIPPRVAEIQVVVIPVGVTAKMSAEAKEELYGKVKKIA 369

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-- 426
             L++ G  V  D   G   G +F   +L G PL++  G K      V    R    +  
Sbjct: 370 DDLTEAGVRVETDYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRDIDDKDA 429

Query: 427 --EDMSLEEVINYASHRFSNNRP 447
               ++++ + N         + 
Sbjct: 430 ARGTINVDNLANEVPKLLEQIQE 452


>gi|255722445|ref|XP_002546157.1| prolyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240136646|gb|EER36199.1| prolyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 559

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 125/228 (54%), Gaps = 4/228 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  K +   L +     +I +H+L+ + G I     G+ +W   G    + +++IIR   
Sbjct: 11  KVPKLYGNQLSKFKYSKDIPTHELLTKLGFITYPRSGLVNWSKSGLLIQNKISSIIRSRM 70

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+S+  +    LW E+GR+D    E+ +L        +  PT EE +TD    +
Sbjct: 71  DEIGFEELSLSLISYKKLWQETGRWDKST-EIFKL---EGDEYLLVPTAEEEITDYINKN 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP   YQI  KFR+E RPR G++R +EFLMKDAYSFDL    + ++Y K+  +Y
Sbjct: 127 LESYKQLPILMYQINPKFRNEKRPRGGLLRGKEFLMKDAYSFDLDESNAMNTYEKVVGAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +IF  L +  +  +A+SG IGG LSHE+  + +TGE  VF   +   
Sbjct: 187 HKIFGDLKIPYVKAQADSGDIGGSLSHEWHYINETGEDTVFKCNECNH 234



 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 11/148 (7%)

Query: 281 GIEVGHIFYFGTKYSLPMSAT--FKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            IEVGH FY G KYS P++       A+G      + MG YGIG  R++AA+ + + D K
Sbjct: 370 AIEVGHTFYLGDKYSKPLNCNIDVPTAEGGMNKQTIMMGCYGIGISRIIAAIAQINRDSK 429

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+ WP S+AP++++ + I   ++  ++    ++  L+    D   DD  E +G +   ++
Sbjct: 430 GLNWPRSIAPWEVTAVEIGQDEERTKE----VFKLLNHGKIDYRLDDRNESMGKKLKQSN 485

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           L+G PL +I+G  +     VEI+ R   
Sbjct: 486 LMGIPLSIILGKHY---PMVEIEVRGKK 510


>gi|195392357|ref|XP_002054824.1| GJ22578 [Drosophila virilis]
 gi|194152910|gb|EDW68344.1| GJ22578 [Drosophila virilis]
          Length = 603

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 135/435 (31%), Gaps = 74/435 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  +I  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 120 QVITKGELIEYYDVSGCYILRHWSFAIWKCIRNWFDAEITRMGVKECYFPIFVSKAALER 179

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +    D    + +   PT E VM   +   I+SYR+LP    Q   
Sbjct: 180 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNN 239

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +          FL    + +    +    ++     +   +   L L    +  
Sbjct: 240 VVRWEFKHPQP------FLRTREFLW----QEGHTAFASKAEADKEVLEILDL-YAQVYT 288

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +   I                             +    T+ +     +          A
Sbjct: 289 DLLAI---------------------------PVVKGRKTEKEKFAGGDYTTTVEAFISA 321

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                               S R I+     + G  +S      ++  +  +  YV   S
Sbjct: 322 --------------------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKQYVYQNS 361

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIY 369
           +GI   R +  +I    D +G++ P  VA  +  ++     +   D+       AC+K+ 
Sbjct: 362 WGIT-TRTIGVMIMVHADNQGLVLPPHVACVQAIVVPCGITVNTKDEERAQLLAACDKLE 420

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            RL+  G     D       G +F   +L G P+++ +G K +   ++    R TG +  
Sbjct: 421 KRLNGAGVRCEGDYRDNYSPGWKFNHWELKGVPIRIELGPKDMQAKQIVAVRRDTGEKLT 480

Query: 429 MSLEEVINYASHRFS 443
           ++L +V         
Sbjct: 481 IALADVEKKIPALLE 495


>gi|71665969|ref|XP_819949.1| prolyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70885272|gb|EAN98098.1| prolyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 810

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/423 (15%), Positives = 124/423 (29%), Gaps = 70/423 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  MI  +   G Y   P        +           G  +   P   S   L  
Sbjct: 317 EVITKAEMIEYYDVSGCYIIRPWAFFIWSRIQRFFGARIESMGVEDCYFPMFVSKSCLER 376

Query: 82  ESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    +      +   PT E VM   +   I+S+R+LP        
Sbjct: 377 EKDHVEGFAPEVAWVTKAGETDLEVPVAIRPTSETVMYPYYAKWIRSHRDLPVRLNMWNN 436

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +R+REFL ++ +    T E       ++   Y  ++  L         
Sbjct: 437 VIRWEFSHPTPFIRTREFLWQEGHCAWQTEEECSQEVLEILDHYAAVYEEL--------- 487

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                             +    T+ +            T   A
Sbjct: 488 -----------------------------LAVPVVKGRKTEKEKFAGGYYTTTVETYIAA 518

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                      +      ++          F    K            DG        S+
Sbjct: 519 VGRGCQGGTSHNLGQNFGKMFNI------SFQDPEK-----------NDGSTLIPWQNSW 561

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQV---CRDACEKIYA 370
           G+ + RV+  +     D  G++ P  VA  ++ +I +       D+      + C+ +  
Sbjct: 562 GL-STRVIGVMTMVHGDDSGMVLPPRVASVQVVIIPVGITKNTTDEERKSLLEGCKTLER 620

Query: 371 RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L   G     D       G +F   ++ G P++V +G + ++  K+ +  R  G R  +
Sbjct: 621 VLVSGGIRAKADLRDNYSPGWRFNHWEVKGVPVRVELGPRELASLKISLVLRHDGSRRSL 680

Query: 430 SLE 432
             +
Sbjct: 681 LWD 683


>gi|326503454|dbj|BAJ86233.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506156|dbj|BAJ91317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 135/436 (30%), Gaps = 69/436 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++ + MI  +   G Y   P   +  + +      E  +        P  +    L  
Sbjct: 51  EVVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQK 110

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        +  +   PT E VM   F   I+S+R+LP    Q   
Sbjct: 111 EKDHIEGFAPEVAWVTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLKCNQWCN 170

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +RSREFL ++ ++   T E +     ++   Y RI+       + +  
Sbjct: 171 VVRWEFSNPTPFIRSREFLWQEGHTVFATKEEADEEVLQILELYRRIYEEF----LAVPV 226

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             G                 E + F    +              I    S          
Sbjct: 227 SKG--------------RKSEMEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKM 272

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                 NEK   S+      +     +G            M  T     G          
Sbjct: 273 FDITFENEKGERSMVWQNSWAYTTRSIG-----------VMVMTHGDDKG---------- 311

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
                               ++ P  VAP ++ +I +   D      + ACE     L++
Sbjct: 312 --------------------LVLPPKVAPIQVIVIPVPFKDADTTAIKGACESAVYTLNQ 351

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     D       G +++  ++ G PL++ +G K +++ +V I  R  G + D+   +
Sbjct: 352 AGIRADLDARENYSPGWKYSQWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPSTD 411

Query: 434 VINYASHRFSNNRPVL 449
           ++          +  L
Sbjct: 412 LVEQVRVLLDGIQANL 427


>gi|326512486|dbj|BAJ99598.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 554

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 126/437 (28%), Gaps = 72/437 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVES 83
           + +  MI  +   G Y   P      +++   +  E  ++G      P L S   L +E 
Sbjct: 73  ITKAEMIEYYDISGCYVLRPWAYSIWESIQGFLDGEFKKSGVSNAYFPLLVSKRQLELEK 132

Query: 84  GRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    D    + +   PT E +M   +   I+S+R++P    Q     
Sbjct: 133 AHVEGFAPEVAWVTRSGDSELAEPVAIRPTSETIMYPCYAKWIRSHRDMPLRLNQWCNVI 192

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +          FL    + +                                    
Sbjct: 193 RWEFKHPVP------FLRTREFLWQ----------------------------------- 211

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                   H         E +V    +                   +   +     Y  T
Sbjct: 212 ------EGHSAFATRPEAEAEVLEILEIYKRAYEELLAIPVTKGKKSEGEKFAGGFYTTT 265

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +                  RGI+       G  +S      F+G DG        S+G 
Sbjct: 266 CEAFIPATG-----------RGIQACTSHCLGQNFSKMFGIEFEGVDGTKQLAWQNSWGF 314

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD------QVCRDACEKIYARLS 373
              R +  +I    D KG++ P  VAP ++ ++ I           + + A   I   L 
Sbjct: 315 T-TRSIGVLIMVHGDNKGLVLPPRVAPTQVVVVPIPYSKGSGDDGALAKRAQTDIVDVLR 373

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K       D       G ++   +  G P+ +  G K   +++     R TG +E ++L 
Sbjct: 374 KANVRTQLDARANYTPGWKYNHWEAKGVPVTIQFGPKDNDNAQCVAVRRDTGAKETIALA 433

Query: 433 EVINYASHRFSNNRPVL 449
            +           +  L
Sbjct: 434 ALATRLPALLQEIQDAL 450


>gi|195504997|ref|XP_002099319.1| GE10841 [Drosophila yakuba]
 gi|194185420|gb|EDW99031.1| GE10841 [Drosophila yakuba]
          Length = 996

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 131/435 (30%), Gaps = 74/435 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  MI  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 513 QVITKGEMIEYYDVSGCYILRHWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEK 572

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +    D    + +   PT E VM   +   ++SYR+LP    Q   
Sbjct: 573 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNN 632

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +          FL    + +    +    ++     +   +   L L       
Sbjct: 633 VVRWEFKQPTP------FLRTREFLW----QEGHTAFADKEEAAKEVLDILDL------- 675

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  +  +       +    T+ +     +          A
Sbjct: 676 ---------------------YALVYTHLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA 714

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                               S R I+     + G  +S      ++  +  +  YV   S
Sbjct: 715 --------------------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNS 754

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIY 369
           +G+   R +  +I    D +G++ P  VA  +  ++     +   D       DAC+ + 
Sbjct: 755 WGLT-TRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALE 813

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            RL   G     D       G +F   +L G PL++ VG K +   ++    R TG +  
Sbjct: 814 KRLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTGEKIT 873

Query: 429 MSLEEVINYASHRFS 443
           + L +V         
Sbjct: 874 IPLADVEKKIPALLE 888


>gi|157564|gb|AAA28594.1| transfer RNA-Glu-Pro aminoacyl synthetase [Drosophila melanogaster]
 gi|1871360|gb|AAC47469.1| glutamyl-prolyl-tRNA synthetase [Drosophila melanogaster]
          Length = 1714

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 131/436 (30%), Gaps = 75/436 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ +  MI  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 1230 QVITKGEMIEYYDVSGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEK 1289

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    D    + +   PT E VM   +   ++SYR+LP    Q   
Sbjct: 1290 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNN 1349

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +          FL    + +    +    ++     +   +   L L       
Sbjct: 1350 VVRWEFKQPTP------FLRTREFLW----QEGHTAFADKEEAAKEVLDILDL------- 1392

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                   +  +       +    T+ +     +          A
Sbjct: 1393 ---------------------YALVYTHLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA 1431

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMG 315
                                S R I+     + G  +S      ++  +   +  YV   
Sbjct: 1432 --------------------SGRAIQGATSHHLGQNFSKMFEIVYEDPEKTQQKKYVYQN 1471

Query: 316  SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKI 368
            S+GI   R +  +I    D +G++ P  VA  +  ++     +   D       DAC+ +
Sbjct: 1472 SWGIT-TRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKAL 1530

Query: 369  YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              RL   G     D       G +F   +L G PL++ VG K +   ++    R TG + 
Sbjct: 1531 EKRLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTGEKI 1590

Query: 428  DMSLEEVINYASHRFS 443
             + L +V         
Sbjct: 1591 TIPLADVEKKIPALLE 1606


>gi|291537165|emb|CBL10277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Roseburia
           intestinalis M50/1]
          Length = 494

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 18  AEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           A+   H+ + +   +        +G+  +LP G      +   I+ ++ + G + +  P 
Sbjct: 178 AKDRDHRKIGKEMHLFMSDDLVGRGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPC 237

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + + +L+  SG +D Y + M    +   ++ +  P +      I+ + + SY++LP    
Sbjct: 238 VGTVNLYKTSGHWDHYKENMFPAMEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIG 297

Query: 134 QIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-K 191
           +I   FR E      G+ R R F   DA+ F +TPE  +  + K+       +    +  
Sbjct: 298 EIAHDFRFEASGTLKGIERGRHFCQNDAHLF-VTPEQIESEFAKVVELIFDTYKDFNITD 356

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              + +   P      H+   + +  E               +     DDI    +    
Sbjct: 357 YRCVLSLRDPEDKVKYHDDDEMWNNAE--------------NALRKVLDDIGIEYTEEIG 402

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
             A Y    DV+ +    +                 F    K++L    ++  +DG K  
Sbjct: 403 EAAFYGPKLDVNVKPAIGNEYTLST-------CQLDFCLPAKFNL----SYIDSDGTKKT 451

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            V +    +G++    A I     G   +W   +AP +  ++ +K 
Sbjct: 452 PVVLHRAILGSLDRFMAYILEETKGNLPLW---LAPVQAKILPVKK 494


>gi|71653235|ref|XP_815258.1| prolyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70880301|gb|EAN93407.1| prolyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 810

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/423 (15%), Positives = 124/423 (29%), Gaps = 70/423 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  MI  +   G Y   P        +         R G  +   P   S   L  
Sbjct: 317 EVITKAEMIEYYDVSGCYIIRPWAFFIWSRIQKFFGARIERMGIEDCYFPMFVSKSCLER 376

Query: 82  ESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    +      +   PT E VM   +   I+S+R+LP        
Sbjct: 377 EKDHVEGFAPEVAWVTKAGETDLEVPVAIRPTSETVMYPYYAKWIRSHRDLPVRLNMWNN 436

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +R+REFL ++ +    T E       ++   Y  ++  L         
Sbjct: 437 VIRWEFSHPTPFIRTREFLWQEGHCAWQTEEECSQEVLEILDHYAAVYEEL--------- 487

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                             +    T+ +            T   A
Sbjct: 488 -----------------------------LAVPVVKGRKTEKEKFAGGYYTTTVETYIAA 518

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                      +      ++          F    K            DG        S+
Sbjct: 519 IGRGCQGGTSHNLGQNFGKMFNI------SFQDPEK-----------NDGSTLIPWQNSW 561

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYA 370
           G+ + RV+  +     D  GI+ P  VA  ++ +I +           +   + C+ +  
Sbjct: 562 GL-STRVIGVMTMVHGDDSGIVLPPRVASVQVVIIPVGITKNTTDKERKSLLEGCKTLEK 620

Query: 371 RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L   G     D       G +F   ++ G P++V +G + ++  K+ +  R  G R  +
Sbjct: 621 VLVSGGIRAKADLRDNYSPGWRFNHWEVKGVPVRVELGPRELASLKISLVLRHDGSRRSL 680

Query: 430 SLE 432
             +
Sbjct: 681 LWD 683


>gi|328861801|gb|EGG10903.1| hypothetical protein MELLADRAFT_74104 [Melampsora larici-populina
           98AG31]
          Length = 488

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 132/405 (32%), Gaps = 62/405 (15%)

Query: 55  AIIREEQNRTGAIEMSVP-TLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPT 109
               E     G      P  + S  L  E    + +  E+  +        ++ +   PT
Sbjct: 23  NWFDERIKALGVENAYFPMFVSSRVLEREKDHIEGFAPEVAWVTRAGKSELEEHIAIRPT 82

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
            E VM   +   I+SYR+LP    Q     R E +     +R+REFL ++ ++  LT   
Sbjct: 83  SETVMYPYYAKWIQSYRDLPLKINQWNSVVRWEFKNPQPFIRTREFLWQEGHTAHLTKPE 142

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           +     ++   Y  ++    L ++P+                      E + F    +  
Sbjct: 143 ADTEVRQILDLYKGVYEE--LLAVPV----------------TPGIKSEKEKFAGGLYTT 184

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                    F                    S + N  + D             E   ++ 
Sbjct: 185 TV-----EGFIPTSGRGIQGATSHCLGQNFSKMFNISVEDPAKPVDSKLGVQAEKLFVWQ 239

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                                     S+G+ + R +  ++    D KG++ P  VA  ++
Sbjct: 240 -------------------------NSWGL-STRTIGVMVMVHGDDKGLVLPPRVAQLQV 273

Query: 350 SLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            +I +           +   D  E++ ARL K G     D   G   G +F   ++ G P
Sbjct: 274 IVIPVGIVASTTQEGRKELYDKTEELAARLRKAGVRAKSDLREGYTPGWKFNSWEMKGIP 333

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           L++ +G K +++    +  R TGI+   SL+++           +
Sbjct: 334 LRLELGPKDLANQTTLVVRRDTGIKTPFSLDKLDEEIPELLERVQ 378


>gi|242090883|ref|XP_002441274.1| hypothetical protein SORBIDRAFT_09g023590 [Sorghum bicolor]
 gi|241946559|gb|EES19704.1| hypothetical protein SORBIDRAFT_09g023590 [Sorghum bicolor]
          Length = 508

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 132/426 (30%), Gaps = 69/426 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++ + MI  +   G Y   P   +  + +      E  +        P  +    L  
Sbjct: 41  EVVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQK 100

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        +  +   PT E VM   F   I+S+R+LP    Q   
Sbjct: 101 EKDHIEGFAPEVAWVTKSGKSELEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCN 160

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +RSREFL ++ ++   T E +     ++   Y RI+       + +  
Sbjct: 161 VVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADEEVLQILELYRRIYEEF----LAVPV 216

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             G                 E + F    +              I    S          
Sbjct: 217 SKG--------------RKSEMEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKM 262

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                 NEK    +      +     +G            M  T     G          
Sbjct: 263 FDITFENEKGVREMVWQNSWAYTTRSIG-----------VMVMTHGDDKG---------- 301

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
                               ++ P  VAP ++ +I +   D      + ACE     L++
Sbjct: 302 --------------------LVLPPKVAPIQVIVIPVPYKDADTTAIKGACESAVYTLNQ 341

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     D       G +++  ++ G PL++ +G K +++ +V I  R  G + D+ +  
Sbjct: 342 SGFRADLDTRENYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPVTN 401

Query: 434 VINYAS 439
           ++    
Sbjct: 402 LVEEVK 407


>gi|239624742|ref|ZP_04667773.1| prolyl-tRNA synthetase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521128|gb|EEQ60994.1| prolyl-tRNA synthetase [Clostridiales bacterium 1_7_47FAA]
          Length = 479

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 132/412 (32%), Gaps = 68/412 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    +N+   +      TG   + +P      L   E    + +  E+  
Sbjct: 38  KGCMVIKPAGYAIWENIQNELDRRFKETGVQNVYMPIFIPESLLEKEKDHVEGFAPEVAW 97

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +         + M   PT E +  D +   I SYR+LP  + Q     R E +     +R
Sbjct: 98  VTHGGLEPLQERMCVRPTSETLFCDFYAKDIHSYRDLPRVYNQWCSVVRWE-KTTRPFLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEF 210
           SREFL ++ ++   T E ++    +M   Y       L +  I         G     E 
Sbjct: 157 SREFLWQEGHTAHATAEEAEARTIQMLNVYAAFCEEVLAIPVIK--------GQKTDKEK 208

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+              + I S   D   + S  S         A      ++     
Sbjct: 209 FAGAEAT------------YTIESLMHDGKALQSGTSHNFGDGFAKAFDIQFTDKDNTLK 256

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                        +G            +       +G                       
Sbjct: 257 YVHQTSWGMTTRMIG-----------ALIMVHGDDNG----------------------- 282

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                  ++ P  +AP ++ ++ ++   +   D   ++  RL K G  V  DD  +  G 
Sbjct: 283 -------LVLPPRIAPVQVMIVPVQQQKEGVLDKAFQLEDRLKKAGFSVKTDDSEKSPGW 335

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +FA  ++ G PL+V +G K +  ++  +  R T  +  +SL+E+    S   
Sbjct: 336 KFADCEMRGIPLRVEIGPKDMEKNQAVLVRRDTHEKSFISLDELETKVSEML 387


>gi|58700192|ref|ZP_00374690.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533291|gb|EAL57792.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 246

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 5/227 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 11  RNKDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRK 70

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 71  KLINNGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 130

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           SH +SYR+LP    +     R+E      G+MR R F   DA+ F +  E       K  
Sbjct: 131 SHTRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM-EEQVNSETIKFC 189

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                ++  LG   I ++    P       E    A+    +     
Sbjct: 190 DLLKEVYSELGFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAVKEA 236


>gi|240103065|ref|YP_002959374.1| threonyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|259516771|sp|C5A5J8|SYT_THEGJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239910619|gb|ACS33510.1| Threonyl-tRNA synthetase (thrS) [Thermococcus gammatolerans EJ3]
          Length = 626

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 154/447 (34%), Gaps = 52/447 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    D E    +LML   ++        G   + P G+     +   + E+    G
Sbjct: 195 EIAKNRIADREPPHVRLMLEHELVDYEPGSDAGNLRYYPKGRLIKGLLEQYVTEKVVEYG 254

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +  I
Sbjct: 255 AMEVETPIMYDFEHPALEKYLNRFPARQ----YIVKSGDKKFFLRFAACFGQFLIKKDAI 310

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SYRNLP   Y++    FR E      G+ R R F M D ++     + +   + K +  
Sbjct: 311 ISYRNLPLRMYELTRYSFRREKSGELSGLRRLRAFTMPDMHTVAKDLKQAMDEFKKQYKL 370

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                +H+F                           +  
Sbjct: 371 SMEVLRGVGLTPDDYEVAIR-----FTHDF------------------WEANKDFIVELA 407

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            II    ++E W   +            D+L +   +S   I+V +   FG         
Sbjct: 408 KIIGKPVLIEMWDQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFG--------I 459

Query: 301 TFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINI 354
           T+   +GK+ Y  +   S      RV+ A++E        GK  ++P  ++P ++ +I +
Sbjct: 460 TYYDEEGKERYPLILHCSPSGAIERVMYAILEKQAKLQAQGKKPMFPLWLSPIQVRVIPV 519

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D    +  +L      V  DD  +++  +   A+    P  ++VG      +
Sbjct: 520 SDD---VLDYALYVAGKLEGAKIRVDVDDTNDRLNKKIRKAEKEWVPYIIVVGKNEKEQN 576

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++ R  G + +M LE++I     +
Sbjct: 577 TVTVRRREDGKQVEMQLEDLIREIRQK 603


>gi|86156454|ref|YP_463239.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|114152166|sp|Q2ILX2|SYP2_ANADE RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|85772965|gb|ABC79802.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 510

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 137/437 (31%), Gaps = 86/437 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    ++V  ++      TG +    P      L   E+   + + KE   +
Sbjct: 39  GCMVIKPWGYALWEHVQRVLDGMFKATGHVNAYFPLFIPLSLLEKEAAHVEGFAKECAVV 98

Query: 97  AD--------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++ +I  PT E ++ + F   ++SYR+LP    Q     R E
Sbjct: 99  THHRLEARDGKLVPVGELEEPLIVRPTSETIIGESFARWVQSYRDLPLLINQWANVVRWE 158

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +R R   +R+ EFL ++ ++   T   +     +M    L I+ R               
Sbjct: 159 MRTRM-FLRTAEFLWQEGHTAHATEPEAIDETMQM----LGIYAR--------------- 198

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                              F  +      +  E T+ +                      
Sbjct: 199 -------------------FAEEWMALPVVQGEKTESERFPGAVRTYCIEAM-------- 231

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                            + ++ G   + G  ++      F+   G   +    S+G+ + 
Sbjct: 232 -------------MQDRKALQAGTSHFLGQNFAKASGIQFQDEKGTLTHAWTTSWGL-ST 277

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK----- 374
           R++ A+I +  D  G++ P  +AP ++ +I +    +V       C  +   L       
Sbjct: 278 RMIGAMIMTHGDDDGMVCPPRLAPQQVVIIPVIQKPEVREQVLAWCTALKRELEAQTYAG 337

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLE 432
               V  D    Q   +       G P+++ VG + +    V +  + R    ++ +   
Sbjct: 338 APVRVHLDARDLQGAKKSWEWIKKGTPVRLEVGPRDIEKGAVFMGRRDRKPREKQSVPRA 397

Query: 433 EVINYASHRFSNNRPVL 449
           E++          +  L
Sbjct: 398 ELVAGVGALLQEIQDAL 414


>gi|328715866|ref|XP_001943193.2| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Acyrthosiphon
            pisum]
          Length = 1143

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 139/447 (31%), Gaps = 97/447 (21%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQSA-DL 79
            +++++  MI  +   G Y   P   +  + +      R ++          P   S   L
Sbjct: 623  QVLVKGEMIEYYDVSGCYVLRPWAYRIWELIQEWFDARIKRKPLNIQNCYFPMFVSQGAL 682

Query: 80   WVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
              E      +  E+  +    +    + +   PT E  M   F   I+SYR+LP    Q 
Sbjct: 683  EREKEHIADFAPEVAWVTKSGETDLAEPIAIRPTSETGMYPAFAKWIQSYRDLPLKLNQW 742

Query: 136  QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                R E +     +R+REFL ++                                    
Sbjct: 743  NSVVRWEFKHPQPFLRTREFLWQEG----------------------------------- 767

Query: 196  RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        H      +  E  V  +  + ++   +               +     
Sbjct: 768  ------------HNAYATREEAERDVLITLGYYEYVYKNMLAVPVIKGKKTEKEKFAGGI 815

Query: 256  YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQM 314
            +  T + +                R I+     Y GT ++      F+  D  K  +V  
Sbjct: 816  FTTTCEAYVASSG-----------RAIQGATSHYLGTNFAKMFDVHFEHPDTHKKSFVHQ 864

Query: 315  GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV-------CRD 363
             S+G+   R +  ++    D +G++ P  +A  ++ ++     +K  ++V       C D
Sbjct: 865  ISFGMT-TRTIGVMVMVHGDDRGLVLPPRIASIQVIIVPCGVGVKTSNEVKDNLTRTCLD 923

Query: 364  ACEKIY-ARLSKVG----------------CDVFWDDM-GEQIGSQFAVADLLGFPLQVI 405
             C ++    L +                       D       G +F   +L G PL++ 
Sbjct: 924  VCNRLKGDSLIESDDENDNSVIQHRNSSLIIRADTDLRDNYSPGWKFNHWELKGVPLRLE 983

Query: 406  VGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +G K +S +++    R  G +  + LE
Sbjct: 984  IGPKDLSRNQIIAVRRDNGDKLTIPLE 1010


>gi|66793366|ref|NP_001019409.1| bifunctional aminoacyl-tRNA synthetase [Rattus norvegicus]
 gi|37654316|gb|AAQ96263.1| LRRGT00050 [Rattus norvegicus]
          Length = 1486

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/454 (14%), Positives = 135/454 (29%), Gaps = 78/454 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      +++      E  + G  
Sbjct: 990  LEAKKEENLAEWYS-QVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVE 1048

Query: 68   EMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHI 122
                P   S   L  E      +  E+  +         + +   PT E VM   +   +
Sbjct: 1049 NCYFPIFVSQGALEKEKNHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 1108

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+LP    Q     R E +          FL    + +    +    ++     +  
Sbjct: 1109 QSHRDLPIRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAD 1158

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   L L +                                +      +    T+ +  
Sbjct: 1159 EVLQILELYAR----------------------------VYEELLAIPVVRGRKTEKEKF 1190

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +          A                    S R I+     + G  +S      F
Sbjct: 1191 AGGDYTTTLEAFISA--------------------SGRAIQGATSHHLGQNFSKMCEIVF 1230

Query: 303  KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN------- 353
            +     G+  +    S+G+   R +  +I    D  G++ P  VA  ++ +I        
Sbjct: 1231 EDPKTPGEKQFAYQCSWGLT-TRTIGVMIMVHGDNMGLVLPPRVASVQVVVIPCGITNTL 1289

Query: 354  IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +   +     C +   RL         D       G +F   +L G P+++ VG + + 
Sbjct: 1290 SEEDREALMAKCNEYRRRLLGADIRARVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMK 1349

Query: 413  DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              +     R TG +  ++ +E  +       + +
Sbjct: 1350 SCQFVAVRRDTGEKLTIAEKEAESKLKGVLEDIQ 1383


>gi|15228692|ref|NP_191771.1| tRNA synthetase class II (G, H, P and S) family protein
           [Arabidopsis thaliana]
 gi|30695549|ref|NP_850736.1| tRNA synthetase class II (G, H, P and S) family protein
           [Arabidopsis thaliana]
 gi|6899922|emb|CAB71872.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|16648885|gb|AAL24294.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|22136084|gb|AAM91120.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|332646791|gb|AEE80312.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
 gi|332646792|gb|AEE80313.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 530

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 129/429 (30%), Gaps = 69/429 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVESGR 85
           +  MI  +   G Y   P      + +      E  +        P  +    L  E   
Sbjct: 67  KQDMIEYYDISGCYILRPWSMAIWEIMQIFFDAEIKKMKVKNCYFPLFVSPGVLEKEKDH 126

Query: 86  YDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +        +  +   PT E VM   +   I+ +R+LP    Q     R 
Sbjct: 127 IEGFAPEVAWVTKSGKSDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRW 186

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +RSREFL ++ ++   T   +     ++   Y RI+     + + +    G 
Sbjct: 187 EFSNPTPFIRSREFLWQEGHTAFATKAEADEEVLQILELYRRIYE----EYLAVPVVKGM 242

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                           E + F    +              +    S             +
Sbjct: 243 --------------KSENEKFAGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAKMFEIN 288

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             NEK    +      +     +G                          + M       
Sbjct: 289 FENEKAETEMVWQNSWAYSTRTIG-------------------------VMIMTH----- 318

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCD 378
                       D KG++ P  VA  ++ +I +   D   Q   DAC    + L + G  
Sbjct: 319 -----------GDDKGLVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIR 367

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              D       G +++  ++ G PL++ +G + + + +V    R  G++ED+    ++ +
Sbjct: 368 AEEDLRDNYSPGWKYSDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDIPRGSLVEH 427

Query: 438 ASHRFSNNR 446
                   +
Sbjct: 428 VKELLEKIQ 436


>gi|322490369|emb|CBZ25629.1| putative bifunctional aminoacyl-tRNA synthetase [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 727

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 137/421 (32%), Gaps = 71/421 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + +  MI  +   G Y   P        V   +  +  R G  +   P   S   L  E 
Sbjct: 237 ITKAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIERLGVEDCYFPMFVSRSCLEREK 296

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I+S+R+LP          
Sbjct: 297 DHIEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVI 356

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       +R+REFL ++ +      E        +   Y  ++ +  L ++P+    
Sbjct: 357 RWEFSHPTPFIRTREFLWQEGHCAWAKAEECAKEVLDILECYASVYEQ--LLAVPV---- 410

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                       V     E + F                              T      
Sbjct: 411 ------------VRGRKTEKEKFAG------------------------GHYTTTVETFI 434

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             V       +     +   +  ++        ++  P +      + +       S+G+
Sbjct: 435 EAVGRGCQGATSHNLGQNFGKMFDI--------RFQDPEN------NEQTLIPWQNSWGL 480

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARL 372
            + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L
Sbjct: 481 -STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQGLLASCRRLESEL 539

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  +  
Sbjct: 540 CEGGVRAKCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVLW 599

Query: 432 E 432
           +
Sbjct: 600 D 600


>gi|294654601|ref|XP_456661.2| DEHA2A07678p [Debaryomyces hansenii CBS767]
 gi|199429004|emb|CAG84617.2| DEHA2A07678p [Debaryomyces hansenii]
          Length = 576

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 2/208 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I +H+L  + G I+    G+  WLP+G     NV+ +I        A E+++  L S+ L
Sbjct: 40  IPTHELFTKFGFINHPKPGLVHWLPVGLAISQNVSRVIHRRMRECNAEEINLSLLSSSQL 99

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W E+GR+D+   E+ +L D +        T EE +T +  +++ SY+NLP  +YQI  KF
Sbjct: 100 WQETGRWDN--SELFKLKDSSKNDFCLVATCEEEITKLIGANLNSYKNLPLLYYQINEKF 157

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++R REFLMKDAYSFDL  E +  +YNK+  +Y +IF  L +  +   A++
Sbjct: 158 RDEKRPRSGLLRGREFLMKDAYSFDLNEEAAMKTYNKVVDAYYKIFQDLRIPFVKADADT 217

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDF 227
           G IGG LSHE+  L   GE  +F   + 
Sbjct: 218 GEIGGTLSHEWHYLHKVGEDTLFTCDEC 245



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--GADGKDH--YVQMGSYGI 319
            +++     E      R IEVGH FY G KYS P+    +    DG      V MG YGI
Sbjct: 368 EDEICAKCEEGHLKLHRAIEVGHTFYLGDKYSKPLKCEVEVPNQDGSQQLTNVLMGCYGI 427

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++AA+ E + D  G  WP  +AP+ ++++     D        K+Y  L+      
Sbjct: 428 GISRIIAAIGEINKDSTGFRWPSVIAPWNVTVVQSPKFDDS---KGIKVYNLLNAASISY 484

Query: 380 FWDDMGE-QIGSQFAVADLLGFPLQVIVGSKF--VSDSKVEIKHRL 422
             DD  +  +G +   + ++G PL VI+G++F  V    VEI+ R 
Sbjct: 485 RLDDRSKIGLGKKIKQSHMVGIPLTVILGNQFPLVE---VEIRGRR 527


>gi|260062022|ref|YP_003195102.1| prolyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88783584|gb|EAR14755.1| prolyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 491

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 142/434 (32%), Gaps = 51/434 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++L+++  +      +G     P G    + + A + +    TG      P       L 
Sbjct: 17  NELVVKADLAENSGVRGCMVIKPYGYAIWEKMQAALDKMFKDTGHQNAYFPIFIPKSYLS 76

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            E+   + + KE   +                    +  +   S                
Sbjct: 77  KEASHVEGFAKECAVVT----------------HYRLKNAEDGS---------------- 104

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
                  G++   E  +++      T E     +Y +   SY  +   +   +  +R E 
Sbjct: 105 -------GIVVDPEARLEEELIVRPTSETIIWDTYRRWIQSYRDLPLLINQWANVVRWEM 157

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF+      E     + +           D     +   +           
Sbjct: 158 RTRLFLRTAEFLWQ----EGHTAHATEAEAIAEAETILDVYATFAEEHMAVPVIKGTKTA 213

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +     +     E      + ++ G   + G  ++      F   +G+  YV   S+G+
Sbjct: 214 GERFAGAVETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFDNTEGQQEYVWATSWGV 273

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I    +           + ARL   G
Sbjct: 274 -STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYRGQEQLEAISAVVNPLAARLRDRG 332

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +DD    + G +F   +L G P+++ VG + +++   E+  R T  ++ +  E + 
Sbjct: 333 ISVKYDDRDTHKPGFKFNEYELKGVPVRLGVGPRDLANGTFEVARRDTLEKQVVPAEGIE 392

Query: 436 NYASHRFSNNRPVL 449
            Y  +     +  +
Sbjct: 393 EYIGNLLGEMQDAI 406


>gi|260911765|ref|ZP_05918337.1| proline-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634091|gb|EEX52209.1| proline-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 493

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 147/445 (33%), Gaps = 52/445 (11%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L++  + A+  S     L+++  +  Q + +G     P G    + +   +      TGA
Sbjct: 5   LKDLTKRADNYSQWFNDLVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDRMFKETGA 64

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
                P L     +                              E      F        
Sbjct: 65  QNAYFPLLIPKSFFSR----------------------------EAEHVKGFAKECAVVT 96

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIF 185
           +      +       +   +           ++      T E    ++Y     S+  + 
Sbjct: 97  HYRLRSSEDGSSVEVDPSAKL----------EEELIIRPTSETIIWNTYKNWIQSWRDLP 146

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                    MR E        + EF+      E     +          +  D     + 
Sbjct: 147 LMCNQWCNVMRWEMRTRPFLRTSEFLWQ----EGHTAHATREEAEEEAKKMLDVYAKFAQ 202

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +         + ++     L     E      + ++ G   + G  ++     TF   
Sbjct: 203 EWMAVPVVCGVKSETERFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTFLNK 262

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I   D+  +   
Sbjct: 263 ENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPIQVVVIPIGKGDEQMKAIA 321

Query: 366 EKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            K+     +L KVG  V +DD   ++ G ++A  +L G P++V++G + + ++ VEI  R
Sbjct: 322 NKLQPVIEQLRKVGVTVKYDDSDNKRPGFKYADYELKGIPVRVVMGGRDLENNTVEIMRR 381

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            T  +E +  E +  +      + +
Sbjct: 382 DTLEKETIGFEGLAEHIVSVLDDMQ 406


>gi|260831390|ref|XP_002610642.1| hypothetical protein BRAFLDRAFT_117885 [Branchiostoma floridae]
 gi|229296009|gb|EEN66652.1| hypothetical protein BRAFLDRAFT_117885 [Branchiostoma floridae]
          Length = 1596

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 144/444 (32%), Gaps = 73/444 (16%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  ++    +++ ++ MI  +   G Y   P+     + +      E  + G   +
Sbjct: 1099 EAKKEENLSDWYSQVITKSEMIEYYDVSGCYILRPMSYSIWEKIKDFFDAEIKKMGVDNV 1158

Query: 70   SVPTLQSAD-LWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +    D    + +   PT E VM   +   IKS
Sbjct: 1159 YFPIFVSQSALEREKTHIADFAPEVAWVTKSGDTDLAEPIAIRPTSETVMYPAYAKWIKS 1218

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP  + Q     R E +     +R+REFL ++ +S   + + +      +   Y R+
Sbjct: 1219 HRDLPIKYNQWNNVVRWEFKHPQPFLRTREFLWQEGHSAFASKDEADEEVMAILELYARV 1278

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +    L +IP+       G     E     D   T        ++  I +         S
Sbjct: 1279 YED--LMAIPVIR-----GRKTEKEKFAGGDYTTT--------VEVYISASGRAIQGATS 1323

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +              D                             G K        ++ 
Sbjct: 1324 HHLGQNFSKMFEIVYEDPEKP-------------------------GEK-----KFVYQN 1353

Query: 305  ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAH 357
            + G      + +  IG M +V        D KG++ P  VA  ++ +I         +  
Sbjct: 1354 SWG------ITTRTIGVMVMV------HGDNKGLVVPPVVARDQVVVIPCGVTASLPEED 1401

Query: 358  DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             Q     C++    L   G     D       G +F   +L G P+++ VG + +  ++ 
Sbjct: 1402 KQKLMKKCQEYRQALRDAGIRATDDLRDNYSPGWKFNHWELKGTPIRMEVGPRDMKQNQF 1461

Query: 417  EIKHRLTGIREDMSLEEVINYASH 440
                R TG +  ++  +       
Sbjct: 1462 VAVRRDTGEKMTLAEGKAAEKIKE 1485


>gi|257053756|ref|YP_003131589.1| prolyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256692519|gb|ACV12856.1| prolyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 484

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/428 (14%), Positives = 132/428 (30%), Gaps = 69/428 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+ + G+       G     P G    + +   +     +TG      P       L  
Sbjct: 23  ELVQKAGLADYAPMGGFIVTRPRGYAIWERLKNHLDGWFKQTGVQNAYFPMFIPESYLEK 82

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +     D  ++ +   PT E ++T       +S+R+LP    Q   
Sbjct: 83  EKDIVEGFDPEVAWVTKGGYDELEEQLAVRPTSESIITPFLAQWTRSHRDLPIRVNQWCS 142

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E         ++ F     + +           + +     R+             
Sbjct: 143 VVRWEATE------TKPFFRTKEFLWQEGHTAHHDEEDAVEEMETRL------------- 183

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                              G+ +           +     D D     ++          
Sbjct: 184 -------------------GQYKRLYEDVLAMPVLSGRKPDHDKFPGAHTTTTVEAL--- 221

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                 + ++ G   Y GT ++     T+   D +       S+
Sbjct: 222 ------------------MPDGKSVQGGTSHYLGTSFAEAYDVTYVDEDEEVKTAHTTSW 263

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV--CRDACEKIYARLSKV 375
           G+ + R + A+  +  D +G++ P ++A  ++ ++ I   D         E + A L   
Sbjct: 264 GL-SWRALGALFMTHSDDQGLVLPPTLAETQVVIVPIWDEDSKDDVLAYAEDVEADLEDA 322

Query: 376 GCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD   +  G ++   +L G PL++ +GS  V+D ++ + HR  G    +  + V
Sbjct: 323 GVRVELDDRDHRNPGFKYNEHELNGVPLRIEIGSYEVADDELTLVHRPDGEEITVERDNV 382

Query: 435 INYASHRF 442
                   
Sbjct: 383 AETVEDHL 390


>gi|162316930|ref|YP_424303.2| prolyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|114152214|sp|Q2SSG0|SYP_MYCCT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 474

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 151/415 (36%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    D +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIAT 94

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E +M D F + I SYR+LP  + Q     R E         
Sbjct: 95  VTRVGQKQLEENLFIRPTSEVLMMDYFSNEINSYRDLPLIYNQWCNVMRWEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL         T E      + +  SY        LK + +                
Sbjct: 148 TRPFLR--------TSEFLWQEGHTVHSSYNEA-ENFCLKILNIY--------------- 183

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   + F  +  +   I  + T+ +                A  +      +FD  
Sbjct: 184 --------EKFAKEILLLPVICGKKTEKEKFAG------------AKDTYTIESLMFDGQ 223

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +
Sbjct: 224 ---------ALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMT 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  ++P ++ +I IK  +Q      E I  +LS    DV  D+  +  G +
Sbjct: 274 HSDDNGLVLPSKISPIQVQIIQIKNTEQ-IDQVVEIIKDKLSDYRIDV--DNSDKSFGFK 330

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
            + A++ G P+++ +G + + ++++ I  R     +  +  +++ +       + 
Sbjct: 331 ISEAEIKGIPIRIEIGPRDLENNQITISRRDQQENKIKVDYKDIKSVVDQMIKDY 385


>gi|158522069|ref|YP_001529939.1| prolyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|158510895|gb|ABW67862.1| prolyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 508

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/464 (17%), Positives = 153/464 (32%), Gaps = 91/464 (19%)

Query: 15  PRDAEIAS--HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           P  AE  S  ++ +++   + + S   G     P G    +N+   +       G     
Sbjct: 11  PTRAENYSEWYQQVVKAADLAETSPVRGCMVIKPWGYAIWENIRQALDGMFKAAGVKNAY 70

Query: 71  VPTLQSADLWV-ESGRYDSYGKEMLRLAD--------------RNDKAMIYGPTHEEVMT 115
            P     +    E+   + + KE   +                   + ++  PT E ++ 
Sbjct: 71  FPLFIPLEFLEREAEHVEGFAKECAVVTHHRLEAKDGRLVPAGELTEPLVVRPTSETIIG 130

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           + F   +KSYR+LP    Q     R E+R R   +R+ EFL ++ ++       +     
Sbjct: 131 ESFSRWVKSYRDLPVLINQWANVVRWEMRTRI-FLRTSEFLWQEGHTVHADAAEAMELAR 189

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            M    L ++ +L    + +    G      S  F      G  + FC +          
Sbjct: 190 HM----LNLYEKLATDYLAIPVIKG--NKSDSERF-----PGAVETFCIEAM-------- 230

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                                       + ++ G   + G  ++
Sbjct: 231 ----------------------------------------MQDRKALQAGTSHFLGQNFA 250

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+   GK+      S+G+ + R++  +I    D  G+I P ++AP  + L+ I 
Sbjct: 251 RASKILFQSEQGKEELAWTTSWGV-STRLIGGLIMCHADDDGMIMPPAIAPAHVVLLPIF 309

Query: 356 AHD---QVCRDACEKIYARLSKVGCD-----VFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
             D   +      + + ARL +         V  D      G++       G PL+V +G
Sbjct: 310 KKDSDRETVMAYTDTLAARLREKQYMGRPVGVEIDTRDIG-GARGWEWIKKGIPLRVEIG 368

Query: 408 SKFVSDSKVEIKHRLTGIREDMSL--EEVINYASHRFSNNRPVL 449
            K +    V +  R  G RE MS+  +  +   +   +  +  L
Sbjct: 369 PKDIEKQSVFVGRRDMGHREKMSVPTDRFVEDIADTLAAVQHTL 412


>gi|255711434|ref|XP_002552000.1| KLTH0B04906p [Lachancea thermotolerans]
 gi|238933378|emb|CAR21562.1| KLTH0B04906p [Lachancea thermotolerans]
          Length = 568

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 5/233 (2%)

Query: 17  DAEIAS--HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPT 73
           DA  AS  H L+   G I Q   G+  WLPLG + L+ +  II+      G A E+S+  
Sbjct: 23  DAVKASSTHNLLQSLGYIKQTQSGLVHWLPLGLRTLNKITNIIKHRMETDGKAEEVSLSL 82

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    LWV + R+D+   E+ +L D         PT EE +T +  S++ SY++LP T Y
Sbjct: 83  LSPKSLWVHTNRWDNG--ELFKLKDSKGSDYCLAPTCEEEITSLIGSYVTSYKDLPMTVY 140

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           Q+  K+RDE RPR G++R REFLMKDAYSFD + E +  ++  M  +Y  IF  LG+  +
Sbjct: 141 QVGRKYRDEKRPRGGLLRGREFLMKDAYSFDASKEEAVRTFESMNHTYDLIFKDLGVPFV 200

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              A+SG IGGD+S E+    ++GE  V             + + F    +  
Sbjct: 201 SAWADSGDIGGDMSKEYHYTHESGEDTVMACDSCGHISNVEKCSSFPVEDNQY 253



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 204 GDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
            D S+E     F       E  +      MD  + S +   D  ++            A+
Sbjct: 299 RDTSNEKVLELFRANKSEDEMMLASVLRVMDCRLNSRSNYPDFPLNQYLKSNFSQLSDAS 358

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             D    +L  S  E    S R IEVGH F+ G KYS P++A F   +  + Y +MG YG
Sbjct: 359 IVDAEAGELCGSCEEGHLSSKRSIEVGHTFFLGQKYSEPLNAKFSTRENTEEYCEMGCYG 418

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+V A+   + D  G+ WP +VAP++IS+           +   ++   LS  G +
Sbjct: 419 IGVSRLVGAIAHVTRDDAGLRWPRAVAPYEISICA-----AKQDELVAEVEGLLSSWGRE 473

Query: 379 VFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           V+  +  E+  +G + A +  LG P+ VIVG K     ++E++  L G R
Sbjct: 474 VWV-NRDEKAGLGRKIAASHSLGIPVCVIVGKKSWPCVEIEVRAPLVGER 522


>gi|169836892|ref|ZP_02870080.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 568

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRR++ F    + +P      + +L++R G I +   G+Y++LPLG K ++N+ +I+REE
Sbjct: 1   MRRTELFTKTNKTSPSGEVSKNAQLLIRAGFIAKEMAGVYAFLPLGLKVVENIKSIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            N+ G+ E+ +  LQ  ++W ++ R+ D+      +   ++D  +  G +HEE + ++ R
Sbjct: 61  MNKIGSKELLMTNLQRKEVWEKTNRWNDNIVDIWFKTKLKDDTEVGLGWSHEEPIVNMMR 120

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+SY++LP + YQ Q K R+ELR + G+MR REF+MKD YSF  T E  +  Y+K+  
Sbjct: 121 QFIRSYKDLPVSVYQFQNKMRNELRAKSGIMRGREFVMKDMYSFHATKEDLEEYYHKVME 180

Query: 180 SYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           +Y + + RLG+     +   SG      SHEF  + D GE  ++
Sbjct: 181 AYEQCYRRLGVGDDTYVTFASGGAFTKFSHEFQTVCDAGEDDIY 224



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 4/225 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           + ++       D        +     + N   E+         D+   +  D  PE    
Sbjct: 346 DIRLIVDDSCRDMVNFETGANKTGQHAYNVNWERDVPLPDQFFDIKLVRDGDISPETGEP 405

Query: 278 SAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             R    EVG+IF FG++ +  M   +  + G+   + +GSYGIG  R++  + E   D 
Sbjct: 406 YIRKRTAEVGNIFNFGSQKTDEMELYYTDSKGEQKSIFLGSYGIGITRIMGVIAEKLSDE 465

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           KG++WP  +AP K+ L++I + D +     +++Y  +   G +V +DD   + G +F   
Sbjct: 466 KGLVWPVDIAPAKVYLVSIGSGDAI--KEADRLYELMKIKGIEVIYDDRDVRPGEKFTDG 523

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +L+G P  V V  + +     E K R TG    ++ +E+ +  S 
Sbjct: 524 ELMGIPHMVTVSDRLIKTGNFEHKLRSTGEVSLLTQDELFDTISQ 568


>gi|161784299|sp|Q8CGC7|SYEP_MOUSE RecName: Full=Bifunctional aminoacyl-tRNA synthetase; Includes:
            RecName: Full=Glutamyl-tRNA synthetase; AltName:
            Full=Glutamate--tRNA ligase; Short=GluRS; Includes:
            RecName: Full=Prolyl-tRNA synthetase; AltName:
            Full=Proline--tRNA ligase; Short=ProRS
          Length = 1512

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/454 (14%), Positives = 136/454 (29%), Gaps = 78/454 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      +++      E  + G  
Sbjct: 1016 LEAKKEENLAEWYS-QVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVE 1074

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHI 122
                P   S A L  E    + +  E+  +         + +   PT E VM   +   +
Sbjct: 1075 NCYFPIFVSQAALEKEKNHIEDFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 1134

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+L     Q     R E +          FL    + +    +    ++     +  
Sbjct: 1135 QSHRDLAVRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAD 1184

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   L L +                                +      +    T+ +  
Sbjct: 1185 EVLQILELYAR----------------------------VYEELLAIPVVRGRKTEKEKF 1216

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +          A                    S R I+     + G  +S      F
Sbjct: 1217 AGGDYTTTIEAFISA--------------------SGRAIQGATSHHLGQNFSKMCEIVF 1256

Query: 303  KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN------- 353
            +     G+  +    S+G+   R +  ++    D  G++ P  VA  ++ +I        
Sbjct: 1257 EDPKTPGEKQFAYQCSWGLT-TRTIGVMVMVHGDNMGLVLPPRVASVQVVVIPCGITNAL 1315

Query: 354  IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +   +     C +   RL      V  D       G +F   +L G P+++ VG + + 
Sbjct: 1316 SEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMK 1375

Query: 413  DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              +     R TG +  ++ +E          + +
Sbjct: 1376 SCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQ 1409


>gi|332158991|ref|YP_004424270.1| threonyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034454|gb|AEC52266.1| threonyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 625

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 155/447 (34%), Gaps = 52/447 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    + E    KLML   ++        G   + P G+     +   + E+    G
Sbjct: 194 EISKSRIAEKEPPHVKLMLEHELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVTEKVIEYG 253

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +  +
Sbjct: 254 AMEVETPVMYDFEHPALEKYLNRFPARQ----YIVLSGDKRYFLRFAACFGQFLISKDAV 309

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SY++LP   Y++    FR E R    G+ R R F M D ++     E +K  + K F  
Sbjct: 310 ISYKHLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDLEQAKEEFKKQFKL 369

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                  ++ V     E                   +  
Sbjct: 370 SMEVLEGVGLTP---------------DDYEVAIRFTED--------FWKENRDFIIELV 406

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +I    ++E W   +            D+L +   +S   I+V +   FG KY      
Sbjct: 407 KLIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFGIKY------ 460

Query: 301 TFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINI 354
                +G++ Y  +   S      RV+ A++E        GK  + P  ++P ++ +I +
Sbjct: 461 --YDENGEERYPLILHCSPSGAIERVMYAILEKQAKLMQQGKKPMLPVWLSPIQVRVIPV 518

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D    +  +L      V  DD  E++  +   A+    P  V+VG+K     
Sbjct: 519 SND---FLDYALYVAGKLEGAKIRVDVDDEDERLNKKIRRAEKEWIPYIVVVGAKEKETG 575

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            + ++ R  G + +  +EE+I     +
Sbjct: 576 TIMVRRREDGKQYETRIEELIREIKEK 602


>gi|148887019|sp|Q0SAY4|SYP2_RHOSR RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
          Length = 479

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 147/423 (34%), Gaps = 70/423 (16%)

Query: 23  HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
           ++++ + G++ +  +KG     P G +  + + + +      TG      P L     L 
Sbjct: 20  NEVVFKAGLVDRGPAKGTMVIRPYGYRLWELLQSELDRRIKDTGHENAYFPLLIPESYLG 79

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+   + +  E+  +        ++ ++  PT E ++ ++    I S+R+LP    Q  
Sbjct: 80  REAEHVEGFSPELAVVTHVGGKVLEEPLVVRPTSETIIGEMMAKWISSHRDLPLLLNQWA 139

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R ELRPR   +R+ EFL ++ ++  +    ++         Y  +     L +IP+ 
Sbjct: 140 NVVRWELRPRM-FLRTTEFLWQEGHTAHVDEASARRETMLALDIYHEVARE--LAAIPV- 195

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V  +    + F       + I     D   + S  S         
Sbjct: 196 ---------------VPGEKTPGERFAGAVAT-YTIEGMMRDGRALQSGTSHYMGIKFAS 239

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A      +E   + L            +G I                             
Sbjct: 240 AFDIRFTSETGREELCHTTSWGMSTRMIGGI----------------------------- 270

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-ACEKIYARLSKV 375
                       + +  D KG+++P  +AP ++ ++ I     V  + A +++  RL  V
Sbjct: 271 ------------VMTHGDDKGLVFPPRLAPHQVVIVPITRGGNVAVEGAADELAHRLRSV 318

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEE 433
           G     D       G ++   ++ G P+++ +G + + D  V +  RL    ++ + ++ 
Sbjct: 319 GVRTHVDARPHLTPGFKYNEWEMRGVPVRLELGPRDLEDGTVMMVKRLGDDGKQAVPIDS 378

Query: 434 VIN 436
           +  
Sbjct: 379 LPE 381


>gi|225386498|ref|ZP_03756262.1| hypothetical protein CLOSTASPAR_00245 [Clostridium asparagiforme
           DSM 15981]
 gi|225047417|gb|EEG57663.1| hypothetical protein CLOSTASPAR_00245 [Clostridium asparagiforme
           DSM 15981]
          Length = 499

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 135/411 (32%), Gaps = 66/411 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    +N+   +      TG   + +P      L   E    + +  E+  
Sbjct: 58  KGCMVIKPAGYAIWENIQNELDRRFKATGVQNVYMPLFIPESLLEKEKDHVEGFAPEVAW 117

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +         + M   PT E +  D +   I SYR+LP  + Q     R E +     +R
Sbjct: 118 VTHGGLEPLQERMCVRPTSETLFCDFYAKDIHSYRDLPRVYNQWCSVVRWE-KTTRPFLR 176

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E ++    +M   Y      +   +IP+       G     E  
Sbjct: 177 SREFLWQEGHTAHATAEEAEERTIQMLNLYADFCEEV--LAIPVVR-----GQKTDKEKF 229

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+              + I S   D   + S  S         A      ++      
Sbjct: 230 AGAEAT------------YTIESLMHDGKALQSGTSHNFGDGFAKAFEIQFTDKDNTLKY 277

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                       +G I                G D                         
Sbjct: 278 VHQTSWGMTTRMIGAI------------IMVHGDDN------------------------ 301

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                G++ P  +AP +I ++ ++       D   ++  RL++ G  V  DD  +  G +
Sbjct: 302 -----GLVLPPRIAPIQIMVVPVQQQKPGVLDKAFELKERLTRAGFSVKVDDSEKSPGWK 356

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FA  ++ G PL+V +G K +  ++  +  R    +  +SL+E+ + A    
Sbjct: 357 FADCEMRGIPLRVEIGPKDMEKNQAVLVRRDNHEKTFISLDELESKAGEML 407


>gi|301769275|ref|XP_002920053.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Ailuropoda
            melanoleuca]
          Length = 1509

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 135/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ +I  +   G Y   P      +++      E  + G    
Sbjct: 1014 EAKKEENLADWYSQVITKSELIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1073

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1074 YFPMFVSQGALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1133

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +          FL    + +    +    ++     +   +
Sbjct: 1134 HRDLPIRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAEEV 1183

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1184 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1215

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1216 GDYTTTLEVFISA--------------------SGRAIQGATSHHLGQNFSKMFEIIFED 1255

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      A  +
Sbjct: 1256 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVASVQVVVIPCGITNALSE 1314

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              R+A    C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1315 EDREALIAKCNDYRKRLLSVNIRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1374

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +  ++  E          +
Sbjct: 1375 QFVAVRRDTGEKLTVADNEAETKLHALLED 1404


>gi|38569901|gb|AAR24471.1| predicted threonyl-tRNA synthetase [uncultured crenarchaeote
           DeepAnt-EC39]
          Length = 616

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 143/422 (33%), Gaps = 63/422 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM--- 93
            G   + P G+     +   + ++    G IE+  P +           YDS+   M   
Sbjct: 216 SGNMRFYPNGRLIKSQIEQYVTDKIRNYGGIEVETPIM-----------YDSHHPSMESY 264

Query: 94  ---LRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKFRDELRP 145
                      D   K +            +      SY+NLP+  Y++    FR E   
Sbjct: 265 FNRFPARQYSIDSEGKHLFLRFAACFGQFLMASDFQLSYKNLPYKLYELTRYSFRREQSG 324

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+ R R F M D ++F      +   + K F     +   LG++             
Sbjct: 325 ELVGLRRLRAFTMPDCHAFCKDMSQAIDEFRKRFDLSREVLSGLGIEE------------ 372

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +++ V     E                        +    ++E W   +        
Sbjct: 373 ---NDYEVGIRFTED--------FYNENKDLIKQLVSKVGKPVLIEMWKEKFFYFVLKWE 421

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GSYGIGAM 322
               D+L +   +S   I+V +    G +Y      TF     +  +  +   S      
Sbjct: 422 FNFIDNLGKASSLSTDQIDVEN----GKRY----GITFTDEKNEQQHPIILHNSPSGAVE 473

Query: 323 RVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           RV+ A++E S     DGK   +P  +AP ++ LI +K       +    + ++L++    
Sbjct: 474 RVIYALLEKSAMQIKDGKIPQFPLWLAPIQVRLIPLKDD---FLEFASNLASKLTEQNIR 530

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  + IG +   A+       +++G K ++ S + ++ R TG    +S E+ +   
Sbjct: 531 VDIDDRNDTIGKRIRDAEKEWINYVLVIGEKEMNSSSLSVRDRTTGDVRQLSTEDFVKEI 590

Query: 439 SH 440
             
Sbjct: 591 QD 592


>gi|284166458|ref|YP_003404737.1| prolyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284016113|gb|ADB62064.1| prolyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 493

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 143/440 (32%), Gaps = 78/440 (17%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E  + A +A +  M           G     P G    + +   +      TG   +  P
Sbjct: 24  EVVQKANLADYAPMG----------GFIVTKPRGYALWEGIQDALDGWFKETGVDNVYFP 73

Query: 73  TLQSADLWVESGRY-DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
                          + +  E+  +     +  ++ +   PT E ++        +S+R+
Sbjct: 74  MFIPESFLEREKDIVEGFDPEVAWVTQGGHEELEERLAVRPTSESIIAPFMADWTRSHRD 133

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    Q     R E        R++EF+ ++ ++   + EG+          Y  ++  
Sbjct: 134 LPLRINQWCSVVRWEATETKPFFRTKEFMWQEGHTAHASDEGAWDEVWTRLGQYEELYED 193

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +   +IP+       G    H+    ADT  T    +       +           + ++
Sbjct: 194 V--LAIPVLR-----GKKPEHDKFPGADT--TTTVEALMPDGKSVQG--------ATSHN 236

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + + +   +  T    +E+   +   +  +S R +                         
Sbjct: 237 LGQSFAEAFDITFVDEDEEERTAYTTSWGLSWRAL------------------------- 271

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDAC 365
                              A+I +  D +G++ P ++AP ++ ++ I   D  +   +  
Sbjct: 272 ------------------GALIMTHSDDQGLVLPPTIAPTQVVIVPIWQEDTKEDVLEYS 313

Query: 366 EKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E I   L   G  V  DD  E+  G +F   +L G PL++ +G   V D +V + HR   
Sbjct: 314 ENIADELEDAGFRVELDDRDERNPGFKFNEHELNGVPLRLEIGPYEVEDEEVTMVHRPDN 373

Query: 425 IREDMSLEEVINYASHRFSN 444
                  +E++         
Sbjct: 374 EESVEDRDEIVESVDEHLDE 393


>gi|126179985|ref|YP_001047950.1| prolyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|152112929|sp|A3CX68|SYP_METMJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125862779|gb|ABN57968.1| prolyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 477

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 141/420 (33%), Gaps = 69/420 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +    KG+Y W P G         ++R+  +R  A  M    +   +   E+     +  
Sbjct: 30  VRYPVKGLYVWYPHGFGIRKRAYGVLRDLMDRDHAETMFPLLIPKTEFMKEAEHIKGFED 89

Query: 92  EMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           E+  +        D  +   PT E  +  ++   I+S+ +LP   YQ+   FR E +   
Sbjct: 90  EVYWVTHGGRNELDVPLALRPTSETAIYPMYALWIRSHTDLPLRLYQVVNTFRYETKHTR 149

Query: 148 GVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            ++R RE    K+A++   T E +          Y   +  L    +P+     P     
Sbjct: 150 PLIRLREITSFKEAHTVHATREEAAAQVETAIALYREFYDTLR---VPVILSRRPAWDKF 206

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                     G      +   M       +     I +++ + + ++  YA T +  N +
Sbjct: 207 ---------PGADYTIAADTIM------PDGKTLQIGTVHMLGDHFSRTYAITYEDANGE 251

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              +      +S R I                                           A
Sbjct: 252 QQYAYQTCYGISERSI-------------------------------------------A 268

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           AV+    D KG++ P  VAP ++ ++ I           +   + A L   G  V  D  
Sbjct: 269 AVVSVHGDDKGLVLPPEVAPLEVVIVPIIVGKRRDEVLASAAALEAELRGAGFAVKLDAR 328

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G+++   ++ G PL+V VG + +  + V    R TG +  +    V+   +   + 
Sbjct: 329 DMRPGAKYYHWEMRGVPLRVEVGPRDIDANTVVAVAR-TGKKTTLDRRGVVEGITSVLAE 387


>gi|281344737|gb|EFB20321.1| hypothetical protein PANDA_008733 [Ailuropoda melanoleuca]
          Length = 1495

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 135/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ +I  +   G Y   P      +++      E  + G    
Sbjct: 1000 EAKKEENLADWYSQVITKSELIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1059

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1060 YFPMFVSQGALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1119

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +          FL    + +    +    ++     +   +
Sbjct: 1120 HRDLPIRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAEEV 1169

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               L L    +  E   I                             +    T+ +    
Sbjct: 1170 LQILDL-YAQVYEELLAI---------------------------PVVKGRKTEKEKFAG 1201

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +          A                    S R I+     + G  +S      F+ 
Sbjct: 1202 GDYTTTLEVFISA--------------------SGRAIQGATSHHLGQNFSKMFEIIFED 1241

Query: 305  AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQ 359
                G+  +    S+G+   R +  +     D  G++ P  VA  ++ +I      A  +
Sbjct: 1242 PKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVASVQVVVIPCGITNALSE 1300

Query: 360  VCRDA----CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              R+A    C     RL  V   V  D       G +F   +L G P+++ VG + +   
Sbjct: 1301 EDREALIAKCNDYRKRLLSVNIRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSC 1360

Query: 415  KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     R TG +  ++  E          +
Sbjct: 1361 QFVAVRRDTGEKLTVADNEAETKLHALLED 1390


>gi|42524428|ref|NP_969808.1| prolyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|81616476|sp|Q6MIW2|SYP_BDEBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39576637|emb|CAE80801.1| proS [Bdellovibrio bacteriovorus HD100]
          Length = 499

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 146/438 (33%), Gaps = 87/438 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    +N+  ++      TG +    P L   + L  E+   + + KE   +
Sbjct: 35  GCMVIKPWGYAVWENMQGVLDRMFKDTGHVNAYFPLLIPLSFLEKEAAHVEGFAKECAVV 94

Query: 97  AD---------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                              ++ +I  PT E ++   F   +KSYR+LP    Q     R 
Sbjct: 95  THHRLKGDGNGKLIPDGELEEPLIIRPTSETIIGHQFAKWVKSYRDLPILVNQWCNVMRW 154

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       MR+R FL    + +                                      
Sbjct: 155 E-------MRTRMFLRTAEFLWQ------------------------------------- 170

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                 H     A   + +     +          ++F +      +++    P      
Sbjct: 171 ----EGHTVHATAKEAQEETLQMLNVY--------SEFAEQYMAMPVIKGMKTPDERFPG 218

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +    ++L ++K    + ++ G   + G  ++      +  A+GK+ +    S+G+ +
Sbjct: 219 AVDTYTIEALMQDK----KALQAGTSHFLGQNFAKASEIKYLSAEGKEEFAWTTSWGV-S 273

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVG-- 376
            R++  +I +  D  G + P  +AP  + +I I  +D+      D  + +   L      
Sbjct: 274 TRLIGGLIMTHSDDNGFVVPPRLAPLHVVIIPIYRNDEERAQVLDYVKALEKDLKAQNYV 333

Query: 377 ---CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE- 432
                V  DD   + G +       G P++V VG + ++  +V +  R  G +E  S+E 
Sbjct: 334 GSSVRVKIDDRDMRGGEKAWQYIKQGVPVRVEVGPRDMAKGEVFVGRRDRGPKEKASMER 393

Query: 433 -EVINYASHRFSNNRPVL 449
              +   ++     +  L
Sbjct: 394 NAFVANITNLLQEMQDGL 411


>gi|15897489|ref|NP_342094.1| prolyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284174806|ref|ZP_06388775.1| prolyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|74581610|sp|Q9UWX2|SYP_SULSO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6015904|emb|CAB57731.1| prolyl (glutamyl) tRNA synthetase [Sulfolobus solfataricus P2]
 gi|13813734|gb|AAK40884.1| Prolyl -tRNA synthetase (proS) [Sulfolobus solfataricus P2]
 gi|261602249|gb|ACX91852.1| prolyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 481

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 148/438 (33%), Gaps = 74/438 (16%)

Query: 26  MLRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LR G  + +     KG+  W+P G K   N+  IIR   + TG  E+  P L   DL  
Sbjct: 19  VLREGEFYDYGRYPIKGMGVWMPYGFKLRQNIIGIIRNFLDSTGHEEVLFPLLIPEDLLR 78

Query: 82  -ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ES     + +E+  +        D  +   PT E  +T +    +K             
Sbjct: 79  RESTHIKGFEEEVFWVTKGGSTDLDVKLALRPTSEVAITTMENLWLK------------- 125

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                                               SY ++   Y +I      ++    
Sbjct: 126 ------------------------------------SYKQLPKKYYQIVSVFRYETK--- 146

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             + P+           A T       ++  ++  I      F      +++   +    
Sbjct: 147 -ATRPMIRLREITTFKEAHTVHETYDDAQKQVEEAIEIYKKIF------DTLTIPYVLSE 199

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               D     L     +      R +++G + + G  +S  +    +  DG   Y    S
Sbjct: 200 RPEWDRFAGALHTYAFDTIMPDGRAMQIGTVHHLGQNFSKALDFKIQKKDGSLDYPHQTS 259

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARL 372
           YGI + R VA+VI    D  G + P SVAP K+ +I I A ++           +I    
Sbjct: 260 YGI-SDRAVASVIAIHGDDHGPVLPPSVAPIKVVVIPIPAKNEEETQQVMKYSIEICEMF 318

Query: 373 SKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +K       D D  +  G +F + ++ G P+++ +G + +    V IK R       +  
Sbjct: 319 NKNNITCLTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELISGTVFIKRRDNFKSYTVRK 378

Query: 432 EEVINYASHRFSNNRPVL 449
           EE IN      +  +  L
Sbjct: 379 EEAINKIKELLNEIQEDL 396


>gi|218782927|ref|YP_002434245.1| prolyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|218764311|gb|ACL06777.1| Prolyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 505

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 137/438 (31%), Gaps = 89/438 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG------------- 84
           G     P G    + + A +      TG      P         +               
Sbjct: 38  GCMVIKPWGYAVWEKIVANLDRMFKETGVKNAYFPLFIPLRFLQKEAKHVEGFATECAVV 97

Query: 85  ---RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
              R +      L  A    + +I  PT E ++ D F   + SYR+LP    Q     R 
Sbjct: 98  THHRLEKGPDGNLVPAGELTEPLIVRPTSETIIGDSFSRWVSSYRDLPILLNQWANVVRW 157

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR   +R+ EFL ++ ++   T E +      M    L ++                
Sbjct: 158 EMRPRV-FLRTAEFLWQEGHTVHATSEEAYERTEMM----LNVYA--------------- 197

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              D   EF+ +       V           P                            
Sbjct: 198 ---DFVEEFLAMP------VLRGAKSPAERFPGAVDTLC--------------------- 227

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      E      + ++ G   + G  +++     F+ A+GK+ Y    S+G  +
Sbjct: 228 ----------IEAMMQDRKALQAGTSHFLGQNFAVASEIKFQSAEGKEEYAWTTSWG-AS 276

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGC- 377
            R++  +I    D  G++ P  +AP ++ L+ I   ++      D    +   L  +   
Sbjct: 277 TRLMGGLIMVHSDDDGLVLPPRIAPAQVVLMPIIKKEETRQAVMDYTNSLADELRALDFH 336

Query: 378 ----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSL 431
                V  DD  ++ G +       G P++V +G + +  + V +  R T    +E M  
Sbjct: 337 GEKLSVEIDD-KDKPG-RAWDWIKKGVPIRVEIGPRDMEKNAVFMGRRDTPGHKKESMDR 394

Query: 432 EEVINYASHRFSNNRPVL 449
            + +        +    L
Sbjct: 395 SDFVAKVVDMLDDMTQKL 412


>gi|316978849|gb|EFV61767.1| putative proline--tRNA ligase [Trichinella spiralis]
          Length = 1494

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 148/460 (32%), Gaps = 108/460 (23%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV- 81
            +++ +  MI  +   G Y   P      + + A +  +           P   +   WV 
Sbjct: 997  QVITKAEMIEYYDISGCYIIRPWAFAIWEAIQAWLDRQIKLMDVANCYFPMFVA---WVT 1053

Query: 82   ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            +SG       EM        + +   PT E VM   F   I+S+R+LP    Q     R 
Sbjct: 1054 KSG-----QSEM-------SEPVAIRPTSETVMYSSFSKWIQSHRDLPLKINQWCNIVRW 1101

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            E +     +RSREFL ++ ++     + +    + +   Y R++    L ++P+      
Sbjct: 1102 EFKHPTPFLRSREFLWQEGHTAHANKDDAVKEVHDILDLYARVYEE--LLAVPVIK---- 1155

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             G     E    AD   T        ++  IP                            
Sbjct: 1156 -GRKTDKEKFAGADFTTT--------IEAYIP---------------------------- 1178

Query: 262  VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIG 320
                            S RGI+     + G  +S      ++  +  K   V   S+G+ 
Sbjct: 1179 ---------------TSGRGIQAATSHHLGQNFSKMFDIVYEHPETQKKENVYQNSWGLT 1223

Query: 321  AMRVVAAVIESSHDGKGIIWPDSVAPFKIS----------------------LINIKAHD 358
              R +        D +G++ P +VA  ++                       +I      
Sbjct: 1224 -TRSIGVFTMIHSDNQGLVLPPAVAKVQVCKKIIFLSSKMDSNVASVVVQVVIIPCGITS 1282

Query: 359  QV-------CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKF 410
             +        +D C+ +   L         D       G +F   +L G PL++ +G + 
Sbjct: 1283 SLDKSVVKNIQDTCQLLNEELRSGEIRSMCDFRDNYSPGWKFNHWELKGVPLRMELGPRD 1342

Query: 411  VSDSKVEIKHRLTGIREDMSLEEV-INYASHRFSNNRPVL 449
            +++ +V +  R  G +  +S+     +      +N +  L
Sbjct: 1343 LNEKQVTLVRRDDGSKMTVSMIGFKADVIKQLLTNIQNSL 1382


>gi|169836559|ref|ZP_02869747.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 289

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 71/172 (41%), Positives = 97/172 (56%), Gaps = 3/172 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            Y   +D+   +  D  P+ K     ARG+EVGHIF  G KYS  + A     +GK   +
Sbjct: 99  HYDIVADIRTARAGDVSPDGKGVLKIARGMEVGHIFKLGDKYSKALDAKVLDENGKQQVI 158

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           QMG YGIG  R+++AVIE  HD  GIIWP S+AP+   +I     D+   +  E+IY  L
Sbjct: 159 QMGCYGIGVSRLMSAVIEQKHDDFGIIWPKSIAPYIADVIIANVKDETQVNVAERIYEAL 218

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                DV  DD  E+ G +F  ADL+GFPL+++ G K  ++  VE+K R TG
Sbjct: 219 KNENIDVVLDDRNERAGFKFKDADLIGFPLKIVAG-KGAANGIVEVKDRATG 269


>gi|50419495|ref|XP_458274.1| DEHA2C13706p [Debaryomyces hansenii CBS767]
 gi|49653940|emb|CAG86351.1| DEHA2C13706p [Debaryomyces hansenii]
          Length = 682

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 133/437 (30%), Gaps = 70/437 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  M+  +   G Y   P      + +         + G      P  + S  L  
Sbjct: 195 QIVTKGEMLDYYDVSGCYILRPNSYSVWETIQEWFNLRIKKMGVQNSYFPMFVSSRVLEK 254

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        D+ +   PT E VM   +   I+S+R+LP    Q   
Sbjct: 255 EKDHIEGFAPEVAWVTRAGNSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNS 314

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++  LT E +     ++   Y  I+    L ++P+  
Sbjct: 315 VVRWEFKHPQPFLRTREFLWQEGHTAHLTKESAAEEVEQILDLYAGIYEE--LLAVPV-- 370

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                         V     E + F   D+              I    S          
Sbjct: 371 --------------VKGKKTENEKFAGGDYTTTCEGFIAETGRGIQGATSHHLGTNFSKM 416

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
               V N +  D    +           + +   T+    M  T     G          
Sbjct: 417 FNISVENPEGADKPRVHA--------FQNSWGLSTRVIGVMVMTHSDNKG---------- 458

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQ---VCRDACEKIYA 370
                               ++ P  VA  ++ +I +    K  D+      D    I  
Sbjct: 459 --------------------LVLPPRVAQTQVVVIPVGLTAKTPDEQRKAINDGAANIEH 498

Query: 371 RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L +    V  D       G +F+  +L G PL++  G K ++  +V    R    +  +
Sbjct: 499 ILKQTDVRVTGDYRDNYSPGWKFSNWELKGTPLRLEFGPKDLASEQVTAVRRDNSQKYSV 558

Query: 430 SLEEVINYASHRFSNNR 446
            L E+           +
Sbjct: 559 KLNELEKRIPEILQEMQ 575


>gi|150866832|ref|XP_001386559.2| prolyl-tRNA synthetase, cytoplasmic [Scheffersomyces stipitis CBS
           6054]
 gi|149388088|gb|ABN68530.2| prolyl-tRNA synthetase, cytoplasmic [Scheffersomyces stipitis CBS
           6054]
          Length = 572

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 119/208 (57%), Gaps = 4/208 (1%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           + +H+L+++  +I+Q   G+ +W P+G   ++ ++ IIR   +     E+ +  L     
Sbjct: 29  LPTHELLVQLNLINQPRAGLVNWSPIGLTIMNKISDIIRRRMDEISFEEVKLSLLSHHSS 88

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W ++GR+D+   E+ +L     +  I  PT EE + +   ++  SY+NLP  +YQI  KF
Sbjct: 89  WRKTGRWDN-SSELFKLK---GEEYILSPTAEEDIVNYVSNNSSSYKNLPLLYYQINPKF 144

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R+E RPR G++R +EF+MKDAYSFD + + +  +Y  +  +Y +IF  L L      A+S
Sbjct: 145 RNEKRPRGGLLRGKEFMMKDAYSFDASEKDAMTTYQSVIGAYTKIFGDLKLPYTKAEADS 204

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDF 227
           G IGG LSHE+  + DTGE  ++     
Sbjct: 205 GDIGGSLSHEWHYIDDTGEDIIYTCDGC 232



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK---GADG--KDHYVQMGSYGIGAM 322
                E    S + IEVGH FY G KYS P+  +        G  +   + MG YGIG  
Sbjct: 362 CGKCEEGHLHSNKAIEVGHTFYLGDKYSKPLDCSMDFPVNEKGQVERRNLIMGCYGIGVS 421

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R++A++ E + D KG+ WP S+AP+ +++I   A  +      E  Y  L+    D   D
Sbjct: 422 RIIASIGEINRDDKGLNWPQSIAPWTMTIIE-GAKSESGESY-ESFYNTLNDNSVDYRLD 479

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  +  +G +   ++LLG PL VI+G ++     +EI+ R     E+
Sbjct: 480 NRAKIGLGKKINQSNLLGIPLAVILGKQY---PIIEIEVRGKRYVEE 523


>gi|259046393|ref|ZP_05736794.1| proline--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036938|gb|EEW38193.1| proline--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 482

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 65/451 (14%), Positives = 147/451 (32%), Gaps = 82/451 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK+++  +Q+    A++  +  +           G   + P G +  +++         
Sbjct: 12  FSKWYIQTIQK----ADLMDYSPVR----------GCMIFKPDGYEIWEHIQEEFNRRFK 57

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
             G      P L     +  E+   + +  E+  + +    + ++ +   PT E ++   
Sbjct: 58  EEGIRNAYFPMLIPESFFTKEADHIEGFAPELPWVTEAAGEKLEERLALRPTSETMIGTA 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F + I SYR+LP+   Q    FR E +     +R+ EFL ++ ++     E ++    KM
Sbjct: 118 FSNWINSYRDLPYEINQWANVFRWEKK-TLPFLRTSEFLWQEGHTAHADEEDARRRTMKM 176

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y  +    G+ ++P+       G     E    A   +T    +       + +  +
Sbjct: 177 LEVYKEVVE--GVLAVPVY-----EGQKTPSERFAGAV--DTYSIEAMMKDGKAVQAGTS 227

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +       +   ++          H                        +   T+    
Sbjct: 228 HYMGTKFAEAFDIKYLTKENEHVYAHT---------------------TSWGVSTRLIGS 266

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-- 355
           +  T     G                              ++ P  VAP ++ LI +   
Sbjct: 267 LIMTHGDEKG------------------------------LVLPPKVAPTQVVLIPVGPW 296

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +  E++   L   G  V  DD     G +F   +L G P+++  G + + +++
Sbjct: 297 KKNPAILEKLEELQKELKAAGLRVKIDDTDNSPGFKFNEWELRGVPMRIECGPRDLENNQ 356

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V  K R    +  +  + +++         +
Sbjct: 357 VMTKMRDLDEKVAVGFDVLVDTILSELDKMQ 387


>gi|257869801|ref|ZP_05649454.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803965|gb|EEV32787.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 477

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/454 (14%), Positives = 154/454 (33%), Gaps = 82/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++++  +Q+    AE+ ++  +          KG   + P G +  +++         
Sbjct: 7   FTEWYIQTIQK----AELMAYSPV----------KGSIIFRPDGFELWEHIQEEFNRFLK 52

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
             G      P L     +  E+   + +  E+  + +      ++ +   PT E ++   
Sbjct: 53  AEGIRNAYFPMLIPQSFFTKEADHIEGFAPELPWVTEVGNEKLEEPLALRPTSETMIGSA 112

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP+   Q    FR E +     +R+ EFL ++ ++      G++     +
Sbjct: 113 FSDWINSYRDLPYEINQWANVFRWEKK-TLPFLRTSEFLWQEGHTAHEDEAGARKRTLGI 171

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y R+       +IP+       G     E    A   +T    +       + +  +
Sbjct: 172 LDEYARLCEE--FLAIPVYK-----GQKTPSERFAGAV--DTYSIEAMMKDGKAVQAGTS 222

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +       +    + +     +  H                        +   T+    
Sbjct: 223 HYMGTKFAEAFDITYLSKENKHTYAHT---------------------TSWGVSTRLLGA 261

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-- 355
           +  T    +G                              +++P ++AP +I L+ +   
Sbjct: 262 LIMTHGDENG------------------------------LVFPPTIAPTQIVLMPVGPW 291

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +  E+++A     G  V  DD     G +F   +L G  L++  G + + +  
Sbjct: 292 KKNPAILEKLEELFASFKAKGIRVRLDDSDNSPGYKFNEWELKGACLRIECGPRDLENGH 351

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V +K R    ++ ++ +++ ++   + +   P L
Sbjct: 352 VMVKVRDLAEKQTVAFDDLADFVDQQLAAMTPRL 385


>gi|326331281|ref|ZP_08197573.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325950914|gb|EGD42962.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 411

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 144/439 (32%), Gaps = 50/439 (11%)

Query: 21  ASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R   I         G+  WLP G      +  +  +     G + +  P L  
Sbjct: 3   LDHRDLNRDLAIFATDPLAGSGLPLWLPDGAVVFAELEQLAADLARADGCVPVKTPVLGK 62

Query: 77  ADLWVESGRYDSYGKEMLRLADR------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
             L+  SG +  +  +M             +  ++  P +      ++R+   SYR LP 
Sbjct: 63  RALFERSGHWAKFADDMFPPMAVGSGSAGEEDDLVLRPANCPHHALVYRARPHSYRELPV 122

Query: 131 TFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             +++   FR E      G+ R R+  + D + F   P+       K   S LR    LG
Sbjct: 123 RLHELAPMFRAERSGVLSGLSRVRQINLDDTHVF-CRPDQVAEEAAKALSSALRAQDILG 181

Query: 190 LKSIPMRAESGPIGGD--LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L+   +R            S E    A+    +            P              
Sbjct: 182 LRVDYVRLSLRDSSPSYLGSAEQWHGAEGALRKAASEAGVEVVEAPG------------- 228

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                    A      + ++ D     + ++   ++                 T+  ADG
Sbjct: 229 -------EAAFYGPKLDLQVVDPRGHEETIATVQVDFNQPER--------FDLTYDAADG 273

Query: 308 KDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
               V M     +G+M  V A +   + G+  +W   +AP +++++ + +       A  
Sbjct: 274 SRQRVVMVHRGTVGSMERVTAAVLERYQGRLPLW---LAPVQLAVLPVSSSQDR---AAR 327

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L   G     D  G  +G++   +     PL  ++G+      +V+++    G+ 
Sbjct: 328 ALVDALVAEGLRPRLDPEG-SLGARIRESRRRREPLIAVIGAVEAEAGEVQVRDVAAGVE 386

Query: 427 EDMSLEEVINYASHRFSNN 445
             +   +++      +++ 
Sbjct: 387 RRVGAADLVEAVKAAYASR 405


>gi|39939231|ref|NP_950997.1| threonyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|39722340|dbj|BAD04830.1| threonyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 308

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 31/327 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +   G+  WLP G      V   I +++       +  P + + +L+  SG  D Y   
Sbjct: 4   KEVGLGLPFWLPKGATVRRIVERYIVDKELSYDYHHVYTPIMANTELYRISGHLDHYASN 63

Query: 93  MLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVM 150
           M  +    N + ++  P +      I++    SY+ LP    ++ +  R E      G+ 
Sbjct: 64  MFPIMTLENGEKLVLRPMNCPHHMMIYKKTPHSYKELPLRIAELGMMHRFEKSGAVSGLQ 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R RE  + DA+ F   P+  K    K+    L ++    +K+  +R              
Sbjct: 124 RVREMTLNDAHIFAC-PDQIKEEMKKIINLILEVYRDFNIKNYELRLSYR---------- 172

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               D  +T+ + + D M         +   I  L+   ++     A      + ++F +
Sbjct: 173 ----DPNDTEKYFNDDQMWHHAEKTLKE--TIQELSLPFKEAIGEAAFYGPKLDVQVFTA 226

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVI 329
           L   + +S   ++    F    K+      TF G D K H  V +    +  M    A +
Sbjct: 227 LGNEETLSTVQLD----FLLPQKF----DLTFIGEDNKHHRPVVIHRAVVSTMERFLAHL 278

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKA 356
                G   +W    AP ++ LI + A
Sbjct: 279 VEETKGVFPLW---FAPVQVLLIPVSA 302


>gi|312601535|gb|ADQ90790.1| Threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 370

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 129/402 (32%), Gaps = 37/402 (9%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +  + +   I E     G  E+  P     +L+  SG    Y  +M +     ++ +I 
Sbjct: 1   MRIYNKIRQKILEFDRNYGFKEVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIP 60

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P        +F   + SYRNLP+   +    +R E      G+ R R   + + + F +
Sbjct: 61  RPMTCPHHIILFSQQLFSYRNLPYRISEQSRLYRYEKSGALLGLERVRAMDLTEGHIF-V 119

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           +        + +F     +     ++   +                      + + F   
Sbjct: 120 SKSQIFSEISHLFQMISEVLDFFKVQIFYISFSKRD-------------PKNKDKFFQDD 166

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              D        D    +  N I        AA      +    +    +          
Sbjct: 167 QMWDQA----EADLKQFLEQNKINYIEKIGEAAFYGPKIDFQVKTALNKEL--------- 213

Query: 286 HIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPD 342
            I      + LP     +F     K     +   G IG      A++     G    W  
Sbjct: 214 TISTLQLDFLLPEKFKISFINEHNKKETPILIHRGLIGTYERFIALLLEQSKGNLPFW-- 271

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            ++P +I +I +    +   D  +KI+  L  +G +   D   E+I  +   A+L     
Sbjct: 272 -ISPKQIIVIPVA---EKHNDFAQKIHKILFDLGFNSEIDLRSERISRKIREANLEKINF 327

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           QVI+G + ++ +++  +   +     +SL + ++       N
Sbjct: 328 QVIIGDEEITKNEITYRKFGSPELFRISLVDFVDLLKSSEKN 369


>gi|115470733|ref|NP_001058965.1| Os07g0165000 [Oryza sativa Japonica Group]
 gi|113610501|dbj|BAF20879.1| Os07g0165000 [Oryza sativa Japonica Group]
          Length = 377

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 124/354 (35%), Gaps = 71/354 (20%)

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             PT E ++  +F   I+SYR+LP    Q     R E+R     +R+ EFL ++ ++   
Sbjct: 1   VRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHA 59

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E +     K  +  + ++                                    F  +
Sbjct: 60  TLEEA----EKEAMQMIDVYT----------------------------------KFAYE 81

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                 IP   +  +     N                                 + ++ G
Sbjct: 82  QAAIPVIPGRKSRVETFAGANRTYTIEAM---------------------MGDRKALQAG 120

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                G  +S      F   + +  +V   S+ I + R V  +I +  D  G++ P ++A
Sbjct: 121 TSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPNIA 179

Query: 346 PFKISLINI-KAHDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFP 401
           P ++ ++ I K  D+     +A   +   L + G  V  DD   +  G +F   ++ G P
Sbjct: 180 PIQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGVP 239

Query: 402 LQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
           +++ +G + V++  V I  R      G    +S++   ++++   R    +  L
Sbjct: 240 IRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASL 293


>gi|291515023|emb|CBK64233.1| prolyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 494

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 144/432 (33%), Gaps = 51/432 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++ G+    + +G     P G    + + A + +    TG      P       + + 
Sbjct: 22  LVVKAGLAENSAVRGCMVIKPYGYAIWEKMQAALDKMFKDTGHQNAYFPLFIPKSFFSK- 80

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                                      E    + F                +   +R + 
Sbjct: 81  ---------------------------EAHHVEGFAKECA-----------VVTHYRLKN 102

Query: 144 RPR-FGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            P   GV+   +  +++      T E    ++Y     SY  +       +  +R E   
Sbjct: 103 DPEGKGVVVDPDAKLEEELIVRPTSETIIWNTYKNWIQSYRDLPILCNQWANVVRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF  L   G T     ++ ++                 S+             
Sbjct: 163 RLFLRTAEF--LWQEGHTAHATREEAVEEAEKMIRVYRKFAEEWMSLPVVVGHKSPNERF 220

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
              E       E      + ++ G   + G  ++      +   +GK  YV   S+G+ +
Sbjct: 221 AGAEDTL--TIEALMQDGKALQSGTSHFLGQNFAKAFDVQYVNKEGKLEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I    +   + C +   I A L   G  
Sbjct: 278 TRLMGALIMAHSDNNGLVLPPKLAPIQVVMVPIYKTPEQLAEICARFGAIAAELRDKGIS 337

Query: 379 VFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD    + G +FA  +L G P+++ +G + + +  +E+  R T  ++ +S E ++  
Sbjct: 338 VKIDDRDNVRPGFKFAEYELKGVPVRLAMGGRDLENGTIELVRRDTLEKQTISQEGLVER 397

Query: 438 ASHRFSNNRPVL 449
                +  +  +
Sbjct: 398 IEGLMAEIQENI 409


>gi|118486938|gb|ABK95302.1| unknown [Populus trichocarpa]
          Length = 498

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 135/433 (31%), Gaps = 69/433 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           ++++   MI  +   G Y   P      + +      E  +        P   S+  L  
Sbjct: 31  EVVVNGEMIEYYDISGCYILRPWAMSIWEIMQVFFDAEIKKMKIKNCYFPLFVSSSVLEK 90

Query: 82  ESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +           +   PT E VM   F   I+ +R+LP    Q   
Sbjct: 91  EKDHIEGFAPEVAWVTKSGKSDLEIPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCN 150

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +RSREFL ++ ++   T + +     ++   Y RI+      +IP+  
Sbjct: 151 VVRWEFSNPTPFIRSREFLWQEGHTAFATKQEADEEVLQILELYRRIYEE--FLAIPI-- 206

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S          E + F    +              I    S          
Sbjct: 207 ----IKGKKS----------EMEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKM 252

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              +  NEK    +      +     +G                                
Sbjct: 253 FEINFENEKGEKGMAWQNSWAYSTRTIG-------------------------------- 280

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSK 374
                     ++    D KG++ P  V+  ++ ++ +   D   Q   DAC      L +
Sbjct: 281 ---------VMVMVHGDDKGLVLPPKVSSVQVIVVPVPFKDANTQGIFDACAATVDTLCE 331

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     D       G +++  ++ G PL++ +G K +++++V    R    + D+S + 
Sbjct: 332 AGIRAEADYRENYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISCDN 391

Query: 434 VINYASHRFSNNR 446
           +         + +
Sbjct: 392 LAEKVKDMLDDIQ 404


>gi|241958042|ref|XP_002421740.1| prolyl-tRNA synthetase, cytoplasmic, putative [Candida dubliniensis
           CD36]
 gi|223645085|emb|CAX39680.1| prolyl-tRNA synthetase, cytoplasmic, putative [Candida dubliniensis
           CD36]
          Length = 567

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K +   L +     +I +H+++ + G I     G+ +W  +G    + +N IIR+  +  
Sbjct: 15  KSYGNQLSKFKYSKQIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKINQIIRQRMDEI 74

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IK 123
              E+S+  +   DLW  + R+D   +E+ +L        +  PT EE +T+  +   ++
Sbjct: 75  NFEEISLSLISHKDLWKLTNRWDQ--EEIFKLV---GDEYLLVPTAEEEITNYVKKQFLE 129

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+N P   YQI  KFR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +
Sbjct: 130 SYKNFPVGLYQINPKFRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHK 189

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           IF  LG+  +   A+SG IGG LSHE+  L  +GE  VF   +  
Sbjct: 190 IFQDLGIPYVKAEADSGDIGGSLSHEWHYLNSSGEDTVFECNECH 234



 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 13/155 (8%)

Query: 281 GIEVGHIFYFGTKYSLPMSATF----KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            IEVGH FY G KYS P+           + +   + MG YGIG  R++AA+ E + D K
Sbjct: 368 AIEVGHTFYLGDKYSKPLDLEVDVPTLNNNIEKQRIMMGCYGIGISRIIAAIAEINRDEK 427

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRD------ACEKIYARLSKVGCDVFWDDMGEQIGS 390
           G+ WP S+AP++++++ +    Q   D        +++Y  L++   D   D+  + +G 
Sbjct: 428 GLKWPRSIAPWEVTIVEVSQQKQSTNDNDNPQENFKEVYNILNEANIDYRLDNRSDSMGK 487

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +   ++L+G PL +I+G+++     +EI+ R    
Sbjct: 488 KLKQSNLIGIPLSIILGNQY---PIIEIEVRGDKK 519


>gi|149280220|ref|ZP_01886343.1| prolyl-tRNA synthetase [Pedobacter sp. BAL39]
 gi|149229057|gb|EDM34453.1| prolyl-tRNA synthetase [Pedobacter sp. BAL39]
          Length = 490

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 142/419 (33%), Gaps = 49/419 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           H   KG     P G    + + A++ ++   TG      P       + +          
Sbjct: 28  HSSVKGCMVIKPYGYSIWEKIQAVLDQKFKDTGHSNAYFPLFIPKSYFSK---------- 77

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                             E    + F +              +   +R +      ++  
Sbjct: 78  ------------------EASHVEGFATECA-----------VVTHYRLKNDGNGNIIVD 108

Query: 153 REFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               +++      T E    ++Y     SY  +   +   +  +R E        + EF+
Sbjct: 109 ETAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTRLFLRTTEFL 168

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E     S             +     + N +           ++     L    
Sbjct: 169 WQ----EGHTAHSTAEEAIEETERMLNVYADFAENWLALPVVRGLKTPNERFAGALDTYC 224

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +
Sbjct: 225 IEALMQDGKALQAGTSHFLGQNFAKAFDVKFTNKEGKIEHVWATSWGV-STRLMGALIMA 283

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMG-EQ 387
             D  G++ P  +AP ++ ++ I   D+  +      +++  +L ++G  V +DD   ++
Sbjct: 284 HSDDAGLVLPPKLAPIQVVIVPIYKGDEELKKISSFVDELMPKLKRLGISVKYDDRDTQR 343

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            G +FA  +L G P+++ +G + + +  VE+  R T  ++ +  + +  + +      +
Sbjct: 344 PGFKFAEYELKGVPIRLAIGGRDMENGTVELARRDTREKQTVIQDGLEIHIAQLLEEIQ 402


>gi|238879629|gb|EEQ43267.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 575

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K +   L +     +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +  
Sbjct: 15  KSYGNQLSKFKYSKQIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEI 74

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IK 123
              E+S+  +   +LW  + R+D   +E+ +L        +  PT EE +T+  +   ++
Sbjct: 75  QFEEVSLSLISHKELWKLTNRWDQ--EEIFKLV---GDEYLLVPTAEEEITNYVKKQFLE 129

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+N P   YQI  KFR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +
Sbjct: 130 SYKNFPLALYQINPKFRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHK 189

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           IF  LG+  +   A+SG IGG LSHE+  L  +GE  VF   +  
Sbjct: 190 IFQDLGIPYVKAEADSGDIGGSLSHEWHYLNSSGEDTVFECNECH 234



 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGAMR 323
                E    ++  IEVGH FY G KYS P+             +   + MG YGIG  R
Sbjct: 355 CGHCEEGTLSASSAIEVGHTFYLGDKYSKPLDLEVDVPTSNKSIEKQRIMMGCYGIGISR 414

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-----------VCRDACEKIYARL 372
           ++AA+ E + D KG+ WP S+AP++++++ +    Q             +D  ++IY  L
Sbjct: 415 IIAAIAEINRDEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYNIL 474

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++   D   D+  + +G +   +DLLG PL +I+G
Sbjct: 475 NQANIDYRLDNRSDSMGKKLKQSDLLGIPLSIILG 509


>gi|332796853|ref|YP_004458353.1| prolyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694588|gb|AEE94055.1| prolyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 481

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 145/425 (34%), Gaps = 70/425 (16%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDS 88
                  KG+  W+P G K   NV  IIR+  + TG  E+  P L    L   ES     
Sbjct: 27  DYGRYPIKGMGVWMPYGFKIRQNVINIIRKFLDETGHEEVLFPLLIPEYLLRKESEHIKG 86

Query: 89  YGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +    ++ +       PT E  +T +    IK                     
Sbjct: 87  FEGEVYWVTKGGEEDLDIRLALRPTSEVAITYMESLWIK--------------------- 125

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                                       SY ++   Y +I      ++   R        
Sbjct: 126 ----------------------------SYKELPKKYYQIVSIFRYETKATRPMIRLREV 157

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               E   L  + E      K+ ++                +++   +        D   
Sbjct: 158 TTFKEAHTLHVSYEDAERQVKEAIEIY----------KKIFDTLGIPYILSERPEWDRFA 207

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                   +      R +++G + + G  ++  +    + ADG   Y    SYGI + RV
Sbjct: 208 GAEHTYAFDTLMPDGRALQIGTVHHLGQHFTKALDYKIQKADGSLDYPYQTSYGI-SDRV 266

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVF 380
           +A  I  + D  G I    +AP K+ +I I A  +       + C++I  +LS  G    
Sbjct: 267 IAVSIAVNGDDHGPILNPIIAPIKVVIIPIPAKTEEDNKRVENYCKEIQEKLSSAGISAV 326

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            D D  +  G +F   ++ G PL++ +G + V++  + IK R T   + +  +E+I   +
Sbjct: 327 VDSDKEKTPGEKFYYWEMKGVPLRIEIGLREVNNETITIKRRDTLESKIVKKDELIKTVN 386

Query: 440 HRFSN 444
              S+
Sbjct: 387 DLLSS 391


>gi|315230254|ref|YP_004070690.1| threonyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315183282|gb|ADT83467.1| threonyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 625

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 155/447 (34%), Gaps = 52/447 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    + E    K+ML   ++        G   + P G+     +   + E+    G
Sbjct: 194 EISKSRIAEKEPPHVKIMLEQELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVTEKVIEYG 253

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +   
Sbjct: 254 AMEVETPIMYDFEHPALEKYLNRFPARQ----YIVKSGDKKYFLRFAACFGQFLIKKDAT 309

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SY++LP   Y++    FR E R    G+ R R F M D ++     + +   + K +  
Sbjct: 310 ISYKHLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTVAKDLKQAMEEFKKQYKL 369

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                  ++ V     E                   +  
Sbjct: 370 SMEVLKGVGLTP---------------DDYEVAIRFTED--------FWNENKDFVVELV 406

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            II    ++E W   +            D+L +   +S   I+V +   FG         
Sbjct: 407 KIIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFG--------I 458

Query: 301 TFKGADGKD-HYVQMGSYGIG-AMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINI 354
           T+   DGK+ H + +     G   RV+ A++E        GK  ++P  ++P ++ +I +
Sbjct: 459 TYYDEDGKEKHPLILHCSPSGAIERVMYAILEKQAKLRNQGKKPMYPLWLSPIQVRVIPV 518

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D    I  +L      V  DD  +++  +   A+    P  ++VG       
Sbjct: 519 N---EDYLDYALYIAGKLEGARIRVDVDDTSDRLTKKIRKAEKEWIPYIIVVGENEKRQG 575

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            + ++ R  G + +M LE++I     R
Sbjct: 576 IITVRKREDGKQYEMQLEDLIKEIKQR 602


>gi|2501044|sp|P78600|SYPC_CANAL RecName: Full=Prolyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|1845347|gb|AAC49876.1| prolyl-tRNA synthetase [Candida albicans]
          Length = 575

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K +   L +     +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +  
Sbjct: 15  KSYGNQLSKFKYSKQIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEI 74

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IK 123
              E+S+  +   +LW  + R+D   +E+ +L        +  PT EE +T+  +   ++
Sbjct: 75  QFEEVSLSLISHKELWKLTNRWDQ--EEIFKLV---GDEYLLVPTAEEEITNYVKKQFLE 129

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+N P   YQI  KFR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +
Sbjct: 130 SYKNFPLALYQINPKFRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHK 189

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           IF  LG+  +   A+SG IGG LSHE+  L  +GE  VF   +  
Sbjct: 190 IFQDLGIPYVKAEADSGDIGGSLSHEWHYLNSSGEDTVFECNECH 234



 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGAMR 323
                E K  ++  IEVGH FY G KYS P+             +   + MG YGIG  R
Sbjct: 355 CGHCEEGKLSASSAIEVGHTFYLGDKYSKPLDLEVDVPTSNNSIEKQRIMMGCYGIGISR 414

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-----------VCRDACEKIYARL 372
           ++AA+ E + D KG+ WP S+AP++++++ +    Q             +D  ++IY  L
Sbjct: 415 IIAAIAEINRDEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYNIL 474

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++   D   D+  + +G +   +DLLG PL +I+G
Sbjct: 475 NQANIDYRLDNRSDSMGKKLKQSDLLGIPLSIILG 509


>gi|302348192|ref|YP_003815830.1| Prolyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328604|gb|ADL18799.1| Prolyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 482

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 139/425 (32%), Gaps = 70/425 (16%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDS 88
                  KG+  W+P G +    V  ++R+  + TG  E+  P L     L  ES     
Sbjct: 28  DYGRYPVKGMGVWMPYGFQIRRRVTDLLRKLLDETGHEEVLFPLLIPDWMLAKESEHVKG 87

Query: 89  YGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +     +  D+ +   PT E  +T      +                      
Sbjct: 88  FEDEVYWVTHGGLEELDQKLALRPTSETPITYYESLWV---------------------- 125

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                                       SY ++   + +I      ++   R        
Sbjct: 126 ---------------------------QSYKQLPRKFYQIVSVFRYETKATRPLIRVREI 158

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  E   + ++ E      K+ +D         F D + +  I+ +          ++ 
Sbjct: 159 SMFKEAHTVHESFEDAESQVKEAIDVYRK-----FFDSLGIPYIISRRPDWDKFAGALYT 213

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 +P+      R +++G +   G  ++   S   +  D K  Y    SYG+ + RV
Sbjct: 214 IAFDTVMPDG-----RTLQIGTVHNLGQNFTKAFSFRIQTRDEKFDYPWQTSYGV-SDRV 267

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ----VCRDACEKIYARLSKVGCDVF 380
           VA +I    D  G++ P  +AP +  +I I +  +       +    + + L   G    
Sbjct: 268 VATLIAIHGDDMGLVLPPDIAPTQAVIIPIPSQSEEDSRKVLEYSRGVLSTLLSSGIRAK 327

Query: 381 WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD      G ++   D  G P++V +G +  S + V I  R T  +  + L E +    
Sbjct: 328 LDDREDTTPGDKYYYWDAKGVPVRVEIGPREASGNTVTIVRRDTLEKRTVPLSEAVGSIK 387

Query: 440 HRFSN 444
             F  
Sbjct: 388 KTFDE 392


>gi|190348228|gb|EDK40650.2| hypothetical protein PGUG_04748 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 379

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 116/355 (32%), Gaps = 55/355 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
             + G   +LP G + ++ +   ++ +Q R G  E+  P +    LW  SG +D+Y  +M
Sbjct: 42  PVTPGSIFFLPHGTRIMNKLIQFMKHQQMRYGFEEVITPLIYKNQLWKTSGHWDNYRDDM 101

Query: 94  LRLA----DRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            ++       ++          P +      IF    +SY   P          R+E   
Sbjct: 102 FKVTGNVVHEHEDPQLHEYGLKPMNCPGHCVIFSKFERSYNEFPIRLSDFSSLHRNEASG 161

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGP- 201
              G+ R R F   D + F    +  +   +      L  +   G+    I     + P 
Sbjct: 162 ALSGLTRVRRFHQDDGHIF-CEFDQVEDEISNTVNLILESYKVFGIPSNEIKFTLSTRPE 220

Query: 202 ---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              IG   + E    A+   + V  +        P +                     A 
Sbjct: 221 DKYIGEISTWE---KAEEKLSNVLTNSGNSWTINPGDG--------------------AF 257

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGS 316
                + +L D+  +  +V    ++    F    ++       +    G  ++  + +  
Sbjct: 258 YGPKIDVQLTDAFGKAHQVGTIQLD----FQLPARF----DLKYIDKHGSRENRPIMIHR 309

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
              G++    A++   + GK   WP  + P +  +I +         A ++I  +
Sbjct: 310 AVFGSLERFFAILLDHYQGK---WPFWLNPRQALIIPVN---DSHVSAAQEIKKQ 358


>gi|291223150|ref|XP_002731575.1| PREDICTED: GH23578-like [Saccoglossus kowalevskii]
          Length = 1716

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/457 (15%), Positives = 130/457 (28%), Gaps = 78/457 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      + +      +    G  
Sbjct: 1218 LEAKKNENLAEWYS-QIITKSEMIEYYDVSGCYILRPWAYSIWEVIKDFFDTKIKELGVE 1276

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHI 122
                P   S A L  E      +  E+  +         + +   PT E V+   +   +
Sbjct: 1277 NCYFPMFVSHAALEREKTHIADFAPEVAWVTKSGSSDLAEPIAVRPTSETVIYPAYAKWV 1336

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+LP    Q     R E +          FL    + +                   
Sbjct: 1337 QSHRDLPIKLNQWCNVVRWEFKHPQP------FLRTREFLWQ------------------ 1372

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                      E        E      +      + +   +    
Sbjct: 1373 --------------------------EGHTAWANAED--AQEEVITILELYARVYEELLA 1404

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            I +    +     +A        + F S       S R I+     + G  +S     TF
Sbjct: 1405 IPVIRGRKTEKEKFAGGDYTTTVEAFISA------SGRAIQGATSHHLGQNFSKMFDITF 1458

Query: 303  KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN------- 353
            +      K  +V   S+G+   R +  +     D +G++ P  VA  +I ++        
Sbjct: 1459 EDPSQPSKHQFVYQNSWGLT-TRTIGVLCMVHGDDQGLVLPPRVATIQIVIVPCGITVDM 1517

Query: 354  IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                     D C++        G     D       G +F   +L G PL++ VG + + 
Sbjct: 1518 SDVDKNALLDKCQEYVKLFKSTGMKCKGDYRDNYSPGWKFNHWELKGVPLRIEVGPRDMK 1577

Query: 413  DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +     R TG +     +           N +  L
Sbjct: 1578 KKQFVAVRRDTGEKTTYPEDGAAAKIRSLLDNIQSSL 1614


>gi|332019229|gb|EGI59739.1| Bifunctional aminoacyl-tRNA synthetase [Acromyrmex echinatior]
          Length = 2487

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 154/458 (33%), Gaps = 80/458 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++        +++ ++GMI  +   G Y   P        +   I +E    G  E 
Sbjct: 1984 EAKKEENFTDWYSQVITKSGMIEYYDVSGCYILRPWSFSIWKIIKEFIDKEITDIGVQEC 2043

Query: 70   SVP-TLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P  +  + L  E      +  E+  +    +    + +   PT E +M   +   ++S
Sbjct: 2044 YFPIFVTRSVLEKEKAHIADFAPEVAWVTKYGETDLAEPIAIRPTSETIMYPAYAKWLRS 2103

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
               LP    Q     R E +          FL    + +                     
Sbjct: 2104 DTELPLRLNQWNNVVRWEFKDPKP------FLRTREFLWQE------------------- 2138

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                G  +   +AE                   E +V    D            ++D+++
Sbjct: 2139 ----GHTAFATKAE------------------AEAEVLMILDLYARV-------YEDLLA 2169

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +  I  + T         +   +   +P N     R I+     Y G  +S   +   +G
Sbjct: 2170 VPVIKGRKTEKEKFAGGEYTTTVEAFIPING----RAIQGATSHYLGQNFSKMFNIQVEG 2225

Query: 305  ADGKDH--YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHD 358
              G++   +V   S+G+   R +  +I    D +G++ P +VAP +I +I     +   +
Sbjct: 2226 IAGREEKTFVYQNSWGLT-TRTIGVMIMVHGDDRGLVLPPNVAPIQIIVIPCGIAVNMDE 2284

Query: 359  ---QVCRDACEKIYARLSKVG-CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               +     C+ +   L + G   V  D       G +F   +L G P+++ VG K +  
Sbjct: 2285 HTKESILKKCDWLVRHLGQEGKFRVKSDCRLNRTPGWKFNHWELKGVPIRLEVGPKDLLK 2344

Query: 414  SKVEIKHRLTGIREDMSL--EEVINYASHRFSNNRPVL 449
            ++V +  R    R  + +  + +I   +   ++ +  L
Sbjct: 2345 NQVTVVRRDNFQRTAIEIYNDNIITPLTSILNDVQKQL 2382



 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 8/133 (6%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++        +++ ++GMI  +   G Y   P        +   I +E    G  E 
Sbjct: 1541 EAKKEENFTDWYSQVITKSGMIEYYDVSGCYILRPWSFSIWKIIKEFIDKEITDIGVQEC 1600

Query: 70   SVP-TLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKS 124
              P  +  + L  E      +  E+  +    +    + +   PT E +M   +   ++S
Sbjct: 1601 YFPIFVTRSVLEKEKAHIADFAPEVAWVTKYGETDLAEPIAIRPTSETIMYPAYAKWLRS 1660

Query: 125  YRNLPFTFYQIQL 137
               LP    Q   
Sbjct: 1661 DTELPLRLNQWNN 1673


>gi|18977723|ref|NP_579080.1| threonyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|22654114|sp|Q8U176|SYT_PYRFU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18893458|gb|AAL81475.1| threonyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 625

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 156/447 (34%), Gaps = 52/447 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    D E    +LML   ++        G   + P G+     +   + E+    G
Sbjct: 194 EIAKSRIADKEPPHVRLMLEHELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVSEKVIEYG 253

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +   
Sbjct: 254 AMEVETPIMYDFEHPALEKYLNRFPARQ----YIVLSGDKRYFLRFAACFGQFMISKDAT 309

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SYRNLP   Y++    FR E R    G+ R R F M D ++     E +K  + K F  
Sbjct: 310 ISYRNLPLRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDIEQAKDEFKKQFKL 369

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                  ++ V     E                   +  
Sbjct: 370 SMEVLGGVGLTP---------------DDYEVAIRFTED--------FWNEHKDFIIELV 406

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +I    ++E W   +            D+L +   +S   I+V +   FG         
Sbjct: 407 KLIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFG--------I 458

Query: 301 TFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINI 354
           T+   +G++ Y  +   S      RV+ A++E       +GK  ++P  ++P ++ +I +
Sbjct: 459 TYYDENGEEKYPLILHCSPSGAIERVMYAILEKQAKLMQEGKKPMFPLWLSPIQVRVIPV 518

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D    +  ++      V  DD  E++  +   A+    P  V+VG K     
Sbjct: 519 ---SKEYLDYALYVAGKIEGARIRVDVDDEDERLSKKIRRAEKEWIPYIVVVGEKEKETG 575

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            + ++ R  G + +  +EE+I     +
Sbjct: 576 TITVRRREDGKQYETRIEELIKEIKQK 602


>gi|212223522|ref|YP_002306758.1| threonyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|229558459|sp|B6YTH4|SYT_THEON RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212008479|gb|ACJ15861.1| Threonyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 627

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 154/447 (34%), Gaps = 52/447 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    D E    ++ML   ++        G   + P G+     +   + E+    G
Sbjct: 196 EISKSRIADREPPHVRIMLEQELVDYEPGSDPGNLRYYPKGRLIKGLLEQYVTEKVVEYG 255

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +  I
Sbjct: 256 AMEVETPIMYDFEHPALEKYLNRFPARQ----YIVKSGDKKFFLRFAACFGQFLIKKDAI 311

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SYRNLP   Y++    FR E      G+ R R F M D ++     + +   + K +  
Sbjct: 312 ISYRNLPLRMYELTRYSFRREKSGELSGLRRLRAFTMPDMHTVARDLKQAMAEFKKQYKL 371

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                  ++ V     E                   +  
Sbjct: 372 SMEVLKGVGLTP---------------EDYEVAIRFTED--------FWNENRDFIVELA 408

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            II    ++E W   +            D+L +   +S   I+V +   FG         
Sbjct: 409 KIIGKPVLIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFG--------I 460

Query: 301 TFKGADGKDHYVQM--GSYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPFKISLINI 354
           T+   DGK+ Y  +   S      RV+ A++E        G   ++P  ++P ++ +I +
Sbjct: 461 TYYDEDGKEKYPLILHCSPSGAIERVMYAILEKQAKLQSKGIKPMFPLWLSPIQVRVIPV 520

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D    +  +L      V  DD  +++  +   A+    P  ++VG      +
Sbjct: 521 ---SEEVLDYALYVAGKLEGAKIRVDVDDTSDRLNKKIRKAEKEWIPYVIVVGRNEKEQN 577

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            + ++ R  G + +M LE++I     +
Sbjct: 578 TITVRRRSDGKQGEMQLEDLIREIRSQ 604


>gi|222479210|ref|YP_002565447.1| prolyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|259511600|sp|B9LUM0|SYP_HALLT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222452112|gb|ACM56377.1| prolyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 491

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 143/444 (32%), Gaps = 78/444 (17%)

Query: 19  EIASH-------KLMLRTGMIHQHSKGIYSWL---PLGQKALDNVNAIIREEQNRTGAIE 68
           E  SH       +++ + G+     +G+  ++   P      + +   +  +   TG   
Sbjct: 12  ESKSHNTGEWYAEVVQKAGLADYGPEGMSGFIVTRPRAYAVWERLQGFLDAKFKDTGVQN 71

Query: 69  MSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIK 123
              P       L  E    + +  E+  + +      ++ +   PT E ++T      ++
Sbjct: 72  AYFPLFIPESYLEREKDIVEGFDPEVAWVTEAGNKELEERLAVRPTSESIITPYISQWVR 131

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           S+R+LP    Q     R E        R++EFL ++ ++   T EG+          Y  
Sbjct: 132 SHRDLPLRVNQWCSVVRWEATETKPFFRTKEFLWQEGHTAHATHEGAWEETMTRLDQYAS 191

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  L        A     G    H+    A+T  T    +       + +         
Sbjct: 192 VYEDL-------LAMPVLKGQKPDHDKFPGAET--TTTVEALMPDGKSVQA--------G 234

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           + + + + +   +  T    +E+   +   +  +S R          G      +  T  
Sbjct: 235 TSHHLGQSFAEAFDITFSDEDEEERIAHTTSWGLSWRA--------LG-----ALIMTHS 281

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVC 361
              G                              ++ P  VAP ++ ++ I   D     
Sbjct: 282 DEQG------------------------------LVLPPGVAPEQVVVVPIWQEDTKDEV 311

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  E +   L   G  V  DD   +  G +F   +L G PL++ +G   V D ++ + H
Sbjct: 312 LEYAEGVADDLDDAGIRVELDDRDGRNPGFKFNEHELNGVPLRIEIGPHEVEDGELTLVH 371

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R  G       E V+      F  
Sbjct: 372 RPDGESVVEDREGVVATVQDHFDE 395


>gi|25012603|gb|AAN71400.1| RE41560p [Drosophila melanogaster]
          Length = 998

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 130/435 (29%), Gaps = 74/435 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  MI  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 515 QVITKGEMIEYYDVSGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEK 574

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +    D    + +   PT E VM   +   ++SYR+LP    Q   
Sbjct: 575 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNN 634

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +          FL    + +    +    ++     +   +   L L       
Sbjct: 635 VVRWEFKQPTP------FLRTREFLW----QEGHTAFADKEEAAKEVLDILDL------- 677

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  +  +       +    T+ +     +          A
Sbjct: 678 ---------------------YALVYTHLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA 716

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                               S R I+     + G  +S      ++  +  +  YV   S
Sbjct: 717 --------------------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNS 756

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIY 369
           +GI   R +  +I    D +G++ P  VA  +  ++     +   D       DAC+ + 
Sbjct: 757 WGIT-TRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALE 815

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            RL   G     D       G +F   +L G PL++ VG K +   ++    R T  +  
Sbjct: 816 KRLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTVEKIT 875

Query: 429 MSLEEVINYASHRFS 443
           + L +V         
Sbjct: 876 IPLADVEKKIPALLE 890


>gi|24649468|ref|NP_732925.1| Glutamyl-prolyl-tRNA synthetase, isoform B [Drosophila
           melanogaster]
 gi|23172101|gb|AAN13964.1| Glutamyl-prolyl-tRNA synthetase, isoform B [Drosophila
           melanogaster]
          Length = 996

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 130/435 (29%), Gaps = 74/435 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           +++ +  MI  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 513 QVITKGEMIEYYDVSGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEK 572

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +    D    + +   PT E VM   +   ++SYR+LP    Q   
Sbjct: 573 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNN 632

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +          FL    + +    +    ++     +   +   L L       
Sbjct: 633 VVRWEFKQPTP------FLRTREFLW----QEGHTAFADKEEAAKEVLDILDL------- 675

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  +  +       +    T+ +     +          A
Sbjct: 676 ---------------------YALVYTHLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA 714

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                               S R I+     + G  +S      ++  +  +  YV   S
Sbjct: 715 --------------------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNS 754

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIY 369
           +GI   R +  +I    D +G++ P  VA  +  ++     +   D       DAC+ + 
Sbjct: 755 WGIT-TRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALE 813

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            RL   G     D       G +F   +L G PL++ VG K +   ++    R T  +  
Sbjct: 814 KRLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTVEKIT 873

Query: 429 MSLEEVINYASHRFS 443
           + L +V         
Sbjct: 874 IPLADVEKKIPALLE 888


>gi|24649466|ref|NP_524471.2| Glutamyl-prolyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|44888996|sp|P28668|SYEP_DROME RecName: Full=Bifunctional aminoacyl-tRNA synthetase; Includes:
            RecName: Full=Glutamyl-tRNA synthetase; AltName:
            Full=Glutamate--tRNA ligase; Short=GluRS; Includes:
            RecName: Full=Prolyl-tRNA synthetase; AltName:
            Full=Proline--tRNA ligase; Short=ProRS
 gi|7301076|gb|AAF56211.1| Glutamyl-prolyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|16198227|gb|AAL13932.1| LD42739p [Drosophila melanogaster]
          Length = 1714

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 130/435 (29%), Gaps = 74/435 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ +  MI  +   G Y            +      E  R G  E   P  +  A L  
Sbjct: 1231 QVITKGEMIEYYDVSGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEK 1290

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    D    + +   PT E VM   +   ++SYR+LP    Q   
Sbjct: 1291 EKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNN 1350

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +          FL    + +    +    ++     +   +   L L       
Sbjct: 1351 VVRWEFKQPTP------FLRTREFLW----QEGHTAFADKEEAAKEVLDILDL------- 1393

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                   +  +       +    T+ +     +          A
Sbjct: 1394 ---------------------YALVYTHLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA 1432

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGS 316
                                S R I+     + G  +S      ++  +  +  YV   S
Sbjct: 1433 --------------------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNS 1472

Query: 317  YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIY 369
            +GI   R +  +I    D +G++ P  VA  +  ++     +   D       DAC+ + 
Sbjct: 1473 WGIT-TRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALE 1531

Query: 370  ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             RL   G     D       G +F   +L G PL++ VG K +   ++    R T  +  
Sbjct: 1532 KRLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTVEKIT 1591

Query: 429  MSLEEVINYASHRFS 443
            + L +V         
Sbjct: 1592 IPLADVEKKIPALLE 1606


>gi|146413645|ref|XP_001482793.1| hypothetical protein PGUG_04748 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 379

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 116/355 (32%), Gaps = 55/355 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
             + G   +LP G + ++ +   ++ +Q R G  E+  P +    LW  SG +D+Y  +M
Sbjct: 42  PVTPGSIFFLPHGTRIMNKLIQFMKHQQMRYGFEEVITPLIYKNQLWKTSGHWDNYRDDM 101

Query: 94  LRLA----DRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            ++       ++          P +      IF    +SY   P          R+E   
Sbjct: 102 FKVTGNVVHEHEDPQLHEYGLKPMNCPGHCVIFSKFERSYNEFPIRLSDFSSLHRNEASG 161

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGP- 201
              G+ R R F   D + F    +  +   +      L  +   G+    I     + P 
Sbjct: 162 ALSGLTRVRRFHQDDGHIF-CEFDQVEDEISNTVNLILESYKVFGIPSNEIKFTLSTRPE 220

Query: 202 ---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              IG   + E    A+   + V  +        P +                     A 
Sbjct: 221 DKYIGEISTWE---KAEEKLSNVLTNSGNSWTINPGDG--------------------AF 257

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGS 316
                + +L D+  +  +V    ++    F    ++       +    G  ++  + +  
Sbjct: 258 YGPKIDVQLTDAFGKAHQVGTIQLD----FQLPARF----DLKYIDKHGSRENRPIMIHR 309

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
              G++    A++   + GK   WP  + P +  +I +         A ++I  +
Sbjct: 310 AVFGSLERFFAILLDHYQGK---WPFWLNPRQALIIPVN---DSHVSAAQEIKKQ 358


>gi|149184542|ref|ZP_01862860.1| prolyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831862|gb|EDL50295.1| prolyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 513

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 133/411 (32%), Gaps = 87/411 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG      P     ++   E+   + + KEM  +
Sbjct: 37  GCMVIRPWGFGIWERMQRLLDDRIKATGHENAYFPIFIPLSNFEREAEHVEGFAKEMAVV 96

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E ++ D     I+S+R+LP    Q     
Sbjct: 97  THHRLIAGKDGGLVPDPEAKLEEPLVVRPTSETIIGDAMARWIQSWRDLPLKLNQWANVV 156

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R   +R+ EFL ++ ++       +K    +M    L ++     + + +    
Sbjct: 157 RWEMRTRM-FLRTSEFLWQEGHTAHADEVEAKEHTLRM----LEVYRAFADEDLALAVVP 211

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G              +  E + F                                     
Sbjct: 212 G--------------EKPENERFPGAVETWSIEA-------------------------- 231

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G   Y GT ++      ++  +G + +    S+G+
Sbjct: 232 ---------------MMQDGKALQAGTSHYLGTNFAKASGIKYQNKEGGETFAHTTSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG 376
            + R+V  VI +  D  G+  P  +AP ++ ++ +   K  D    + CE + A L+   
Sbjct: 277 -STRMVGGVIMTHGDDDGLRLPPKIAPQQVVILPMLRDKPEDDALIEYCEALRATLASQQ 335

Query: 377 C-----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                  V  D    +   +       G P+ V VG + + +  V +  R 
Sbjct: 336 VLGEPLRVLLDTRPGKAAQKRWDYVRKGAPIIVEVGGRDMENGVVSMLRRD 386


>gi|242081969|ref|XP_002445753.1| hypothetical protein SORBIDRAFT_07g025100 [Sorghum bicolor]
 gi|241942103|gb|EES15248.1| hypothetical protein SORBIDRAFT_07g025100 [Sorghum bicolor]
          Length = 508

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 134/436 (30%), Gaps = 69/436 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++ + MI  +   G Y   P   +  + +      E  +        P  +    L  
Sbjct: 41  EVVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQK 100

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        +  +   PT E VM   F   I+S+R+LP    Q   
Sbjct: 101 EKDHIEGFAPEVAWVTKSGKSELEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCN 160

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +RSREFL ++ ++   T E +     ++   Y RI+       + +  
Sbjct: 161 VVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADEEVLQILELYRRIYEEF----LAVPV 216

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             G                 E + F    +              I    S          
Sbjct: 217 SKG--------------RKSEMEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKM 262

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                 NEK    +      +     +G            M  T     G          
Sbjct: 263 FDITFENEKGVREMVWQNSWAYTTRSIG-----------VMVMTHGDDKG---------- 301

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
                               ++ P  VAP ++ +I +   D      + ACE     L++
Sbjct: 302 --------------------LVLPPKVAPIQVIVIAVPYKDADTTAIKGACESTVYTLNE 341

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     D       G +++  ++ G PL++ +G K +++ +V I  R  G + D+ +  
Sbjct: 342 SGIRADQDTRENYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPVTN 401

Query: 434 VINYASHRFSNNRPVL 449
           ++          +  L
Sbjct: 402 LVEEVKVLLDEIQKNL 417


>gi|159131195|gb|EDP56308.1| prolyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 584

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 116/218 (53%), Gaps = 11/218 (5%)

Query: 13  ENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + P   E    ++L++R G + Q   GI+  LPLG +  + +  +I +     GA ++S+
Sbjct: 9   KKPSQGEKEDANELLIRGGFLRQAYSGIFHMLPLGLRVQEKLERLIDKHMRSVGASKVSL 68

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            ++ S +LW +SGR     +             +  PTHEE +T +  S  KSYR+LP  
Sbjct: 69  SSISSQELWEQSGRLKEGSESRF----------LLAPTHEEEITTLVGSLTKSYRDLPLR 118

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            YQI  K+RDE RPR G++R REFLMKD Y+FD + E +  +YN +  +Y  +F  L + 
Sbjct: 119 VYQISRKYRDEPRPRQGLLRGREFLMKDLYTFDYSVEEALKTYNLVKAAYKNLFDELKIP 178

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +   A+SG +GG LSHEF   +  GE  V    +   
Sbjct: 179 YLVAAADSGNMGGSLSHEFHFPSSKGEDTVISCSNCDH 216



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 19/219 (8%)

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D  D   L+       A         ++    +    K  +   +E+GH F+ GT+YS  
Sbjct: 370 DEIDYSMLDRFPGTNQALNLVKVQDGDKCTKCAKGSLKTHT--AVELGHTFHLGTRYSEV 427

Query: 298 MSATFK-------GADGKDH--YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           + A+         G+  KD    +QMG +GIG  R+++AV +S  D KG+ WP ++AP++
Sbjct: 428 LQASVMVDRSLSGGSQSKDQLVPMQMGCHGIGVSRMISAVADSLSDSKGLNWPRAMAPYE 487

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           + ++  +  +       EK+Y  L        D   DD  + +G +   ADL+G+P+ V+
Sbjct: 488 VVVVPGRGLETE----AEKVYDSLVSNHTSSVDAILDDRDKPMGWKLGDADLIGYPVIVV 543

Query: 406 VGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFS 443
           VG  +     +E++  RL  +RED+ L+++ ++      
Sbjct: 544 VGKGWKKAQTLEVQCRRLNNLREDVPLDQLPSFVQSLLE 582


>gi|70995366|ref|XP_752440.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66850075|gb|EAL90402.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
          Length = 584

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 116/218 (53%), Gaps = 11/218 (5%)

Query: 13  ENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + P   E    ++L++R G + Q   GI+  LPLG +  + +  +I +     GA ++S+
Sbjct: 9   KKPSQGEKEDANELLIRGGFLRQAYSGIFHMLPLGLRVQEKLERLIDKHMRSVGASKVSL 68

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            ++ S +LW +SGR     +             +  PTHEE +T +  S  KSYR+LP  
Sbjct: 69  SSISSQELWEQSGRLKEGSESRF----------LLAPTHEEEITTLVGSLTKSYRDLPLR 118

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            YQI  K+RDE RPR G++R REFLMKD Y+FD + E +  +YN +  +Y  +F  L + 
Sbjct: 119 VYQISRKYRDEPRPRQGLLRGREFLMKDLYTFDYSVEEALKTYNLVKAAYKNLFDELKIP 178

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +   A+SG +GG LSHEF   +  GE  V    +   
Sbjct: 179 YLVAAADSGNMGGSLSHEFHFPSSKGEDTVISCSNCDH 216



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 19/219 (8%)

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D  D   L+       A         ++    +    K  +   +E+GH F+ GT+YS  
Sbjct: 370 DEIDYSMLDRFPGTNQALNLVKVQDGDKCTKCAKGSLKTHT--AVELGHTFHLGTRYSEV 427

Query: 298 MSATFK-------GADGKDH--YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           + A+         G+  KD    +QMG +GIG  R+++AV +S  D KG+ WP ++AP++
Sbjct: 428 LQASVMVDRSLSGGSQSKDQLVPMQMGCHGIGVSRMISAVADSLSDSKGLNWPRAMAPYE 487

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           + ++  K  +       EK+Y  L        D   DD  + +G +   ADL+G+P+ V+
Sbjct: 488 VVVVPGKGLETE----AEKVYDSLVSNHTSSVDAILDDRDKPMGWKLGDADLIGYPVIVV 543

Query: 406 VGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFS 443
           VG  +     +E++  RL  +RED+ L+++ ++      
Sbjct: 544 VGKGWKKAQTLEVQCRRLNNLREDVPLDQLPSFVQSLLE 582


>gi|145593399|ref|YP_001157696.1| tRNA synthetase, class II (G, H, P and S) [Salinispora tropica
           CNB-440]
 gi|145302736|gb|ABP53318.1| tRNA synthetase, class II (G, H, P and S) [Salinispora tropica
           CNB-440]
          Length = 405

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 131/410 (31%), Gaps = 43/410 (10%)

Query: 21  ASHKLMLR-TGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             H+ + R  G+         G+  WLP G  A   V   +R+ + + G   +  P L  
Sbjct: 2   IDHRRLGRDLGLFTSDPLAGAGLPLWLPAGAAARHAVEEYLRDLERQAGYQHVVTPPLGR 61

Query: 77  ADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            +L+  SG  D + +EM        D  ++  P+       ++R   +S+R+LP    ++
Sbjct: 62  RELFERSGHLDHFAEEMFPPMRLSADDELVLRPSLCPHHALVYRCRGRSWRDLPLRIAEM 121

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E      G+ R R   + DA++F    E       ++          LG++   
Sbjct: 122 GGMYRAERSGVLGGLARVRAISLNDAHNFCA-LEQVGAEVAEILRLIRVAHAALGVRPAG 180

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      G     E    A   E                                +   
Sbjct: 181 FRLSLRGSGQRYVGEEDDWARAEE--------------------LLRAALDGVEYTEDVG 220

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQ 313
             A      + ++ D+      +S   ++                 ++  + G +   V 
Sbjct: 221 AAAFYGPKIDIQVEDAAGREWTLSTVQLDFDKPER--------FDLSYIDSGGARRRPVL 272

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+M  + + +   H+G   +W    AP ++ ++ +       +D         +
Sbjct: 273 VHRSLVGSMERLFSYLIEVHEGAFPVW---YAPVQLVVLPV----AAAQDGAADEVVAAA 325

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +        D    +G +   A     P   +VG +  +   V ++ R  
Sbjct: 326 RAAGLRAEVDRSGSLGGRIRDAAQARIPYVAVVGPREAAAGHVLLRLRDG 375


>gi|118401186|ref|XP_001032914.1| prolyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|89287259|gb|EAR85251.1| prolyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 691

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 137/437 (31%), Gaps = 69/437 (15%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ ++ MI  +   G Y   P      + +     +            P  +    L 
Sbjct: 213 KQVITKSEMIEYYDISGCYILRPHAYAIWEIIQRFFDDIIKGFDVQNAYFPMFVTDKALN 272

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +         + +   PT E +M   +   IKS+R+LP    Q  
Sbjct: 273 KEKEHVEGFSPEVAWVTRSGSTDLPEPIAVRPTSETIMYPAYSKWIKSHRDLPLKLNQWT 332

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R             EF  KD   F  T E                        +   
Sbjct: 333 NVVRW------------EF--KDPTPFIRTRE-----------------------FLWQE 355

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +       + EF  L      +V+  +      I    ++ +            T   
Sbjct: 356 GHTAHATDAEATEFTFLIQDQYRRVY-EELLAVPVIKGVKSENEKFPGAYFSSTIETCIP 414

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A                      R ++     + G  +S     +F   + K  Y    S
Sbjct: 415 ANG--------------------RAVQAATSHHLGQNFSKMFDISFLDGEKKKQYAYQTS 454

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLS 373
           +G+   R +  +I    D KG++ P  VA  ++ ++ I    A ++   +   ++ A L 
Sbjct: 455 WGLT-TRTIGVMILYHGDDKGLVLPPLVASTQVVIVPIIKTGADNERVLNKAHELKAELK 513

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K G  V  DD      G +F   ++ G PL+  +G   +  +++    R+   +E +  E
Sbjct: 514 KAGIRVQVDDRDNYTSGWKFNHWEVKGIPLRFEIGQMDMDKNQITAVWRVNSHKEAIPNE 573

Query: 433 EVINYASHRFSNNRPVL 449
            +I     R    + ++
Sbjct: 574 SIIETTKLRLKEIQDLM 590


>gi|254172046|ref|ZP_04878722.1| threonyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033942|gb|EEB74768.1| threonyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 624

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 152/447 (34%), Gaps = 52/447 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    D E    KLML   ++        G   + P G+     +   + E+    G
Sbjct: 193 EIHKNRIADKEPPHVKLMLEHELVDYEPGSDGGNLRYYPKGRLIKGLLEQYVTEKVVEYG 252

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +  I
Sbjct: 253 AMEVETPIMYDFEHPALEKYLNRFPARQ----YIVKSGDKKFFLRFAACFGQFLIKKDAI 308

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SYR+LP   Y++    FR E      G+ R R F M D ++     + +   + K +  
Sbjct: 309 ISYRHLPLRMYELTRYSFRREKSGELSGLRRLRAFTMPDMHTVAKDLKQAMDEFKKQYKL 368

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                  ++ V                         +  
Sbjct: 369 SMEVLRGVGLTP---------------DDYEV--------AIRFTRDFWEENRDFIVELA 405

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            II    ++E W   +            D+L +   +S   I+V +   FG         
Sbjct: 406 KIIGKPVLIEMWDQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFG--------I 457

Query: 301 TFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINI 354
           T+   +GK+ Y  +   S      RV+ A++E        GK   +P  ++P ++ +I +
Sbjct: 458 TYYDEEGKERYPLILHCSPSGAIERVMYAILEKQAKLQAQGKKPAFPLWLSPIQVRVIPV 517

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D    +  +L      V  DD  +++  +   A+    P  ++VG      +
Sbjct: 518 SDD---VMDYALYVAGKLEGAKIRVDVDDTNDRLNKKIRKAEKEWIPYIIVVGKNEKEQN 574

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++ R  G + +M LE++I     +
Sbjct: 575 TVTVRRREDGKQLEMQLEDLIREIRQK 601


>gi|56971485|gb|AAH88324.1| Eprs protein [Rattus norvegicus]
          Length = 503

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/454 (14%), Positives = 135/454 (29%), Gaps = 78/454 (17%)

Query: 11  LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           L+    +  AE  S +++ ++ MI  +   G Y   P      +++      E  + G  
Sbjct: 7   LEAKKEENLAEWYS-QVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVE 65

Query: 68  EMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHI 122
               P   S   L  E      +  E+  +         + +   PT E VM   +   +
Sbjct: 66  NCYFPIFVSQGALEKEKNHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 125

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +S+R+LP    Q     R E +          FL    + +    +    ++     +  
Sbjct: 126 QSHRDLPIRLNQWCNVVRWEFKHPQP------FLRTREFLW----QEGHSAFATFEEAAD 175

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   L L +                                +      +    T+ +  
Sbjct: 176 EVLQILELYAR----------------------------VYEELLAIPVVRGRKTEKEKF 207

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              +          A                    S R I+     + G  +S      F
Sbjct: 208 AGGDYTTTLEAFISA--------------------SGRAIQGATSHHLGQNFSKMCEIVF 247

Query: 303 KGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN------- 353
           +     G+  +    S+G+   R +  +I    D  G++ P  VA  ++ +I        
Sbjct: 248 EDPKTPGEKQFAYQCSWGLT-TRTIGVMIMVHGDNMGLVLPPRVASVQVVVIPCGITNTL 306

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +   +     C +   RL         D       G +F   +L G P+++ VG + + 
Sbjct: 307 SEEDREALMAKCNEYRRRLLGADIRARVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMK 366

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             +     R TG +  ++ +E  +       + +
Sbjct: 367 SCQFVAVRRDTGEKLTIAEKEAESKLKGVLEDIQ 400


>gi|255513372|gb|EET89638.1| prolyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 484

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 129/406 (31%), Gaps = 69/406 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G+  + P G    D +     E   + G      P       L  E      +  E+  
Sbjct: 38  SGVIVFRPDGYFVWDAIRNATNELFIKAGIQNAYFPLFIPEKFLEKEKEHVKGFTPEVAW 97

Query: 96  LAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      + D+ +   PT E +M D +   I+S+R+LP    Q     R E +     +R
Sbjct: 98  VTHAGDSKLDERLAVRPTSETIMYDSYSKWIRSWRDLPLRLNQWNNVVRWEFKHPTPFLR 157

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL  + ++   T   +    + +   Y ++            A  G  G   ++E  
Sbjct: 158 SREFLWNEGHTAFATQAEADAERDVILGIYEKVLEE-------YLALPGIKGRKTNYEKF 210

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A                                      +                  
Sbjct: 211 AGA------------------------------------LRSYSIEHLMPDGKAIQGPDF 234

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
             + +  ++  E+                 F    GK  YV   ++ I + R +  ++ +
Sbjct: 235 HSDGQNFSKAFEI----------------KFLDKRGKMEYVYQNTFAI-STRELGVLVAT 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQI 388
             D KG+I P  +A  ++ ++ I   +      D C+KI   L      VF DD      
Sbjct: 278 HSDDKGLIIPPKLARIQVVIVPIYKTENRDSIIDYCKKIKKELEDS-FRVFLDDSDAYSP 336

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +F   +L G P+++ +G K     +  +  R T  +      ++
Sbjct: 337 GWKFNEWELKGVPVRIEIGEKETKLDEATLFRRDTLAKSKAKASQI 382


>gi|242398481|ref|YP_002993905.1| Threonyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|259516775|sp|C6A1R1|SYT_THESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|242264874|gb|ACS89556.1| Threonyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 625

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 148/432 (34%), Gaps = 52/432 (12%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           K+ML   ++        G   + P G+     +   + ++    GA+E+  P +   +  
Sbjct: 209 KIMLEQELVDYEEGSDPGNLRYYPKGRLIKSLLENYVTDKVIEYGAMEVETPIMYDFEHP 268

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +       +    DK              I +    SYR+LP   Y++  
Sbjct: 269 ALEKYLNRFPARQ----YVVKSGDKRFFLRFAACFGQFLIKKDATISYRHLPLRMYELTR 324

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++     + +   + K +   + +   +GL     
Sbjct: 325 YSFRREKRGELSGLRRLRAFTMPDMHTVAKNLQQAMEEFKKQYKLSMEVLKGVGLTP--- 381

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        ++ V     E                   D   II    ++E W   
Sbjct: 382 ------------EDYEVAIRFTED--------FWNENKDFIVDLAGIIGKPVLIEMWKQR 421

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM- 314
           +            D+L +   +S   I+V +   FG         T+   +G++ Y  + 
Sbjct: 422 FFYFILKFEFNFVDNLDKAAALSTVQIDVENSQRFG--------ITYYDEEGQEKYPLLL 473

Query: 315 -GSYGIGAMRVVAAVIESSHD----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             S      RV+ A++E        GK  ++P  ++P ++ +I +    +   D    I 
Sbjct: 474 HCSPSGAIERVMYAILEKQAKIMKKGKKPMYPLWLSPIQVRIIPV---SEKYLDYALYIA 530

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L         DD  E++  +   A+    P  ++VG        + ++ R    + ++
Sbjct: 531 GKLEGAKIRADVDDRNERLNKKIREAEKEWIPYIIVVGENEKRMGVITVRKREDNKQYEI 590

Query: 430 SLEEVINYASHR 441
            +E++I     +
Sbjct: 591 QVEDLIKEIRQK 602


>gi|119573935|gb|EAW53550.1| threonyl-tRNA synthetase-like 1, isoform CRA_c [Homo sapiens]
          Length = 344

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 111/345 (32%), Gaps = 40/345 (11%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              P +      +F    +S+R LP          R E      G+ R R F   DA+ F
Sbjct: 29  ALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIF 88

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             T +  +            ++  LG     +   + P G         L D  E  +  
Sbjct: 89  CTT-DQLEAEIQSCLDFLRSVYAVLGFSFR-LALSTRPSGFLG---DPCLWDQAEQVLKQ 143

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +      P                  +  +   A      +  L D+L    +     ++
Sbjct: 144 ALKEFGEP-----------------WDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLD 186

Query: 284 VGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
               F    ++       +KG  G  +  V +    +G++  +  V+  S  GK   WP 
Sbjct: 187 ----FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGVLAESCGGK---WPL 235

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFP 401
            ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  + 
Sbjct: 236 WLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYN 292

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            Q +VG K  S   V I+ R      +  L E +        N R
Sbjct: 293 FQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 336


>gi|226310645|ref|YP_002770539.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226093593|dbj|BAH42035.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 488

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/447 (14%), Positives = 139/447 (31%), Gaps = 70/447 (15%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     +  + A++  +  +           G   + P G +  + +   + +   
Sbjct: 14  QSEDFSRWYIDAIKKADLMDYTPVR----------GCIVFKPDGFELWERIQEAMNKRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            TG      P L     +  E    + +  E+  + +   + +            I    
Sbjct: 64  ETGHRNAYFPMLIPESFFQKEKEHIEGFNPELPWVTEAGGEPLEEKLALRPTSETIIGHM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                       Q    +RD                                   +   +
Sbjct: 124 YS----------QWIQSYRD--------------------------------LPVLINQW 141

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F          R E   +    + EF  L   G T     ++     +       + 
Sbjct: 142 ANVF----------RWEKRTMPFLRTSEF--LWQEGHTAHATEEEARQETMQMLEIYREV 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +I         +         +    E      + ++ G   Y G K++      
Sbjct: 190 VEQELAIPVWKGQKTPSERFAGAVDTY--SIEAMMKDGKAVQAGTSHYLGDKFARGFEIK 247

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--Q 359
           F   D +  YV   S+G  + R++ ++I    D +G++ P  +AP ++ +I +      +
Sbjct: 248 FLDRDNQFKYVHTTSWG-TSTRLIGSMIMVHGDDRGLVLPPRMAPTQVIMIPVGPMKLRE 306

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +A + ++  +   G  V  D   E  G +F   ++ G PL++ +G + V + +V + 
Sbjct: 307 KVMEAFDPLFDEIKAAGVRVRADLREETPGWKFNEWEMRGVPLRLELGPRDVENGQVILA 366

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R TG +  +SLE +           +
Sbjct: 367 RRDTGEKVTVSLEGIAQTVVQLLEEIQ 393


>gi|159489080|ref|XP_001702525.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280547|gb|EDP06304.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 130/407 (31%), Gaps = 71/407 (17%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKA 103
             + V     +   + G      P   + D L  E    + +  E+  +        +K 
Sbjct: 1   MWEVVQGWFDQRIKKLGVQNSYFPLFITEDVLNTEKDHVEGFAPEVAWVTKYGNSTMEKP 60

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +   PT E VM   F   I+S+R+LP    Q     R E                     
Sbjct: 61  IAIRPTSETVMYPYFSQWIRSHRDLPLRLNQWTNVVRWE--------------------- 99

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                      K       S        H      +  E +V  
Sbjct: 100 --------------------------FKYPTPFIRSREFLWQEGHTAFATQEEAEREVLD 133

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                   +      ++D++++     + +         +   +   +PE    + RGI+
Sbjct: 134 -------ILELYRGVYEDLLAVPVTKGKKSKKEQFAGAFYTTTVEAYIPE----TGRGIQ 182

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                  G  +S   + T++  D +  +V   S+G+   R +  +I +  D KG++ P  
Sbjct: 183 GATSHCLGQNFSKMFNITYEDDDRQKQHVWQNSWGLT-TRSLGVMIMTHADDKGLVLPPR 241

Query: 344 VAPFKISLINIKAHD------QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           VAP ++ LI I          Q   D  +++   L   G  V  D       G ++   +
Sbjct: 242 VAPKQVVLIPIPKASTAPEAVQAMLDKVDELTKALEDKGVRVVTDTRSNYTPGWKYNHWE 301

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           L G PL+V +G K + ++ V    R TG +E +   +V         
Sbjct: 302 LKGLPLRVELGPKDMDNAAVMTCRRDTGAKEVVPWADVATRIPELLE 348


>gi|205373971|ref|ZP_03226772.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 476

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 143/441 (32%), Gaps = 77/441 (17%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +    AE+  +  +  + +I           P G K  +++   +  +   TG 
Sbjct: 16  FAKWYTDVVTKAELVDYSSVRGSMIIR----------PYGYKIWEHIKDQLDRKIKETGH 65

Query: 67  IEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSH 121
             + +P      L   E    + +  E+  +    ++ +       PT E +  + +R+ 
Sbjct: 66  ENVYMPLFIPESLLQVEKDHIEGFAPEVAWVTHGGEEKLQERLCVRPTSEVLFAEHYRNI 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I SYR+LP  + Q     R E +     +R+ EFL ++ ++   T + +     KM   Y
Sbjct: 126 IHSYRDLPKLYNQWANVVRWE-KTTRPFLRTLEFLWQEGHTCHETEQEAIEETEKMLNVY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I     L +IP+       G     E    A    T    S       + +  + F  
Sbjct: 185 ATICEE--LLAIPVIR-----GRKTEKEKFAGATF--TYTIESLMHDGKALQAATSHFLG 235

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +    +         V                         + F T+    M   
Sbjct: 236 DRFAEAFSITFLNREGREQHVQ---------------------QTSWGFTTRIIGAMIMV 274

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G                              ++ P +VAP ++ ++ I  H +  
Sbjct: 275 HGDNRG------------------------------LVLPPNVAPTQVMIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  R+  V   V  D   +Q G +F  +++ G P+++ VG K +   +V +  R
Sbjct: 305 LDHAYGLKERVKTV-ARVDIDASDKQPGWKFNESEMKGIPIRLEVGPKDMEQDQVILVRR 363

Query: 422 LTGIREDMSLEEVINYASHRF 442
            TG +  + + EV    +   
Sbjct: 364 DTGEKVQVGISEVEQKITELL 384


>gi|332292776|ref|YP_004431385.1| prolyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170862|gb|AEE20117.1| prolyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 492

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 146/452 (32%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A +      TG      P      L+ 
Sbjct: 17  NELVVQADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETGHENAYFPLFVPKSLFE 76

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ +I  PT E ++ + ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDPDNPSKLIVDPNAKLEEELIVRPTSEAIIWNTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T + +      M   Y
Sbjct: 137 IQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATKQEALVEAELMNNIY 195

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                     +IP+       G     E    AD  ET    +       + +  + F  
Sbjct: 196 AEFAE--NFLAIPVVK-----GVKTESERFAGAD--ETFCIEALMQDGKALQAGTSHFLG 246

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +   ++T        V                         +   T+    +  T
Sbjct: 247 QNFAKAFDVKFTTNQGKQEHVW---------------------ATSWGVSTRLMGALIMT 285

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-- 359
                G                              ++ P ++APF++ ++ I    +  
Sbjct: 286 HSDDQG------------------------------LVLPPNLAPFQVVIVPIYKGQEQL 315

Query: 360 -VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   +I   L   G  V +D+    + G +F   +L G PL++ +G K +    VE
Sbjct: 316 DAISQVANEIVQDLKLHGVSVKFDNRDTHKPGWKFNEYELKGVPLRIGIGPKDLEKRTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E ++ E ++          +  L
Sbjct: 376 LARRDTLTKEFVAKENIVETVVDLLKEIQENL 407


>gi|297294085|ref|XP_001089812.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like, partial
           [Macaca mulatta]
          Length = 400

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 102/310 (32%), Gaps = 36/310 (11%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  E+  P + ++ LW+ SG +  Y + M        +     P +      +F 
Sbjct: 95  EYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEK-ELFALKPMNCPGHCLMFD 153

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP       +  R+EL     G+ R R F   DA+ F    E  +       
Sbjct: 154 HRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAM-EQIEDEIKGCL 212

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++   G     +   + P       E    A+                   +   
Sbjct: 213 DFLRTVYSVFGFSF-KLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG-- 269

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                             A      + ++ D++    + +   ++    F    +++L  
Sbjct: 270 ------------------AFYGPKIDIQIKDAIGRYHQCATIQLD----FQLPIRFNLTY 307

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                  D K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +    
Sbjct: 308 --VSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGK---WPFWLSPRQVMVVPVGP-- 360

Query: 359 QVCRDACEKI 368
             C +  +K+
Sbjct: 361 -TCDEYAQKV 369


>gi|229015779|ref|ZP_04172758.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1273]
 gi|229021987|ref|ZP_04178545.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228739314|gb|EEL89752.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228745536|gb|EEL95559.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1273]
          Length = 476

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 139/448 (31%), Gaps = 67/448 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               ESG  + Y   M        K       H E         
Sbjct: 61  -------------------KESGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LEKATELQGRIQKV-ARVKIDASNKTPGWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
            T  +E +S++++              L
Sbjct: 364 DTKEKEFISMDQLEERIRSLLEEIHHSL 391


>gi|50284855|ref|XP_444855.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524157|emb|CAG57748.1| unnamed protein product [Candida glabrata]
          Length = 673

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 142/432 (32%), Gaps = 70/432 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      +++      +    G      P  + S  L 
Sbjct: 185 QQVVTKGEMLDYYDISGCYILRPNSYAIWESIQDYFNAKIKAIGVKNAYFPMFVSSRVLE 244

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E V+   +   I+SYR+LP    Q  
Sbjct: 245 KEKDHVEGFAPEVAWVTRAGSSELEEPIAIRPTSETVIYPYYAKWIQSYRDLPLKLNQWN 304

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  L  + ++    ++   Y  I++   L ++P+ 
Sbjct: 305 SVVRWEFKHPQPFLRTREFLWQEGHTAFLDQDDAEKEVLQVLDFYAGIYNE--LLAVPV- 361

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F    F              I    S         
Sbjct: 362 ---------------VKGKKTEKEKFAGAAFTTTVEGYIPETGRGIQGATSHHLGQNFSK 406

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                V N       PE+ +V A      + +   T+    M  T     G         
Sbjct: 407 MFNLSVENPLG----PEHPKVYAYQ----NSWGLSTRTLGVMVMTHSDNKG--------- 449

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQV---CRDACEKIY 369
                                ++ P  VA  +  +I +    K  D+      DA + + 
Sbjct: 450 ---------------------LVVPPRVAQHQAVVIPVGITKKTTDEQRKSIHDAAKNVE 488

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            RL K     F D +     G +F+  +L G PL+V +G K +   +V +  R    +  
Sbjct: 489 DRLLKASVRAFGDYNDNYTPGWKFSQYELKGIPLRVELGPKDIEQGQVVVVRRNDSRKYV 548

Query: 429 MSLEEVINYASH 440
           + L+E+ +    
Sbjct: 549 VKLDELESRIPE 560


>gi|83283367|gb|ABC01299.1| prolyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 437

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 149/412 (36%), Gaps = 70/412 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD 98
             + P G +  + +   + EE  +     +  P L    L+  E    D +  E+  +  
Sbjct: 1   MIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIATVTR 60

Query: 99  RN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                 ++ +   PT E +M D F + I SYR+LP  + Q     R E         +R 
Sbjct: 61  VGQKQLEENLFIRPTSEVLMMDYFSNEINSYRDLPLIYNQWCNVMRWEKT-------TRP 113

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           FL         T E      + +  SY        LK + +                   
Sbjct: 114 FLR--------TSEFLWQEGHTVHSSYNEA-ENFCLKILNIY------------------ 146

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                + F  +  +   I  + T+ +                A  +      +FD     
Sbjct: 147 -----EKFAKEILLLPVICGKKTEKEKFAG------------AKDTYTIESLMFDGQ--- 186

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D
Sbjct: 187 ------ALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSD 239

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G++ P  ++P ++ +I IK  +Q      E I  +LS    DV  D+  +  G + + 
Sbjct: 240 DNGLVLPSKISPIQVQIIQIKNTEQ-IDQVVEIIKDKLSDYRIDV--DNSDKSFGFKISE 296

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
           A++ G P+++ +G + + ++++ I  R     +  +  +++ +       + 
Sbjct: 297 AEIKGIPIRIEIGPRDLENNQITISRRDQQENKIKVDYKDIKSVVDQMIKDY 348


>gi|312214020|emb|CBX94022.1| similar to prolyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 561

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 142/442 (32%), Gaps = 71/442 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  MI  +   G Y   P      +++ A    +           P   SAD L 
Sbjct: 62  QQVITKGQMISYYDVAGCYILEPSSYAIWESIKAWFDAKIKTRKTRNAYFPIFISADNLE 121

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E  M   F   I+S+R+LP    Q  
Sbjct: 122 REKEHVEGFAAEVAWVTKGGKSDLEKPVAVRPTSETAMYPYFARKIQSHRDLPLKLNQWN 181

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +RSREFL ++ ++  LT E +     ++   Y  ++    L ++P+ 
Sbjct: 182 NVVRWEFKHPMPFIRSREFLWQEGHTAHLTEEEASAEVLQILDWYSDVYQ--NLLAVPVV 239

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G    +E    AD   T        ++  IP+         S            
Sbjct: 240 K-----GTKTVNEKFPGADYTTT--------IEGFIPATGRGIQAATSHCLGQHFSKMFN 286

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               D   ++   S               H+                        V   S
Sbjct: 287 ITVEDPTAKENGKSE--------------HVH-----------------------VWQTS 309

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIY 369
           +G+   R +  +I +  D +G++ P  VA  ++ LI +           +      + I 
Sbjct: 310 WGLT-TRSIGVMILTHGDNRGLVIPPRVAEIQVVLIPVGVTAKMSAEDKEALYSKVKNIA 368

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-- 426
             L +VG  V  D   G   G +F   +L G PL++  G K      V    R    +  
Sbjct: 369 DDLHEVGVRVETDYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRDIDDKDA 428

Query: 427 --EDMSLEEVINYASHRFSNNR 446
                S++ +           +
Sbjct: 429 ARGTTSVDNIKTEIPKLLEQIQ 450


>gi|328876572|gb|EGG24935.1| prolyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 615

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 132/419 (31%), Gaps = 70/419 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVES 83
           + R  M+  +   G Y   P      + +      E  + G      P  +    L  E 
Sbjct: 121 ITRAEMVDYYDVSGCYILRPWSYSIWEQIQGFFDGEIKKLGVQNAYFPLFVSEKALATEE 180

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +         + +   PT E +M   + + I+S+R+LP    Q     
Sbjct: 181 DHIEGFAPEVAWVTKSGQSELSEPIAIRPTSETIMYPAYANWIRSHRDLPLKLNQWVNVV 240

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +      R   FL    + +                                    
Sbjct: 241 RWEFK------RPVPFLRSREFLWQ----------------------------------- 259

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                   H      +  + +VF         +      ++D++++  +    +      
Sbjct: 260 ------EGHTVYATKEEADKEVFN-------ILRLYKRVYEDLLAVPVVEGIKSEKEKFA 306

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             ++   +   +P N     R I+       G  +S   +  F+  DGK       S+G+
Sbjct: 307 GGLYTSTIEGFIPSNG----RAIQAATSHALGQNFSKMFNIEFENTDGKKALAWQNSWGL 362

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVG 376
              R +  ++    D  G++ P  +AP ++ ++     D   +   +   ++ A L   G
Sbjct: 363 T-TRSIGVMVMVHGDDNGLVLPPRIAPIQVVILPFYFKDTSSEEIDNKAAEVLALLQAAG 421

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMSLEE 433
                D+  G     +    +L G P+++ +G K + +  V    R   G     S+ E
Sbjct: 422 IRAQVDNRTGYSPRDKHVHWELKGVPIRIEIGPKDLVNKVVVFCRRDVPGKEGKFSVPE 480


>gi|220915162|ref|YP_002490466.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953016|gb|ACL63400.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 508

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 136/437 (31%), Gaps = 86/437 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    ++V  ++      TG +    P      L   E+   + + KE   +
Sbjct: 37  GCMVIKPWGYALWEHVQRVLDGMFKATGHVNAYFPLFIPLSLLEKEAAHVEGFAKECAVV 96

Query: 97  AD--------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++ ++  PT E ++ + F   ++SYR+LP    Q     R E
Sbjct: 97  THHRLEARDGKLVPVGELEEPLVVRPTSETIIGESFARWVQSYRDLPLLINQWANVVRWE 156

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +R R   +R+ EFL ++ ++   T +           +       LG+ +          
Sbjct: 157 MRTRM-FLRTAEFLWQEGHTAHATEQ----------EAIDETMQMLGIYAR--------- 196

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                              F  +      +  E T  +                      
Sbjct: 197 -------------------FAEEWMALPVVQGEKTASERFPGAVRTYCIEAM-------- 229

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                            + ++ G   + G  ++      F+   G   +    S+G+ + 
Sbjct: 230 -------------MQDRKALQAGTSHFLGQNFARASGIQFQDEKGALTHAWTTSWGL-ST 275

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK----- 374
           R++ A+I +  D  G++ P  +AP ++ +I +    +V       C ++   L       
Sbjct: 276 RMIGAMIMTHGDDDGMVCPPRLAPQQVVIIPVIQKPEVREQVLAWCAELKRELEAQSYAG 335

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLE 432
               V  D    Q   +       G P+++ VG K +    V +  + R    ++ +   
Sbjct: 336 APVRVHLDARDVQGAKKSWEWIKKGAPIRLEVGPKDIEKGAVFMGRRDRKPREKQSVPRG 395

Query: 433 EVINYASHRFSNNRPVL 449
           E++          +  L
Sbjct: 396 ELVAGVGALLQEIQDAL 412


>gi|68487989|ref|XP_712153.1| hypothetical protein CaO19.6701 [Candida albicans SC5314]
 gi|68488040|ref|XP_712128.1| hypothetical protein CaO19.13993 [Candida albicans SC5314]
 gi|77023056|ref|XP_888972.1| hypothetical protein CaO19_6701 [Candida albicans SC5314]
 gi|46433496|gb|EAK92934.1| hypothetical protein CaO19.13993 [Candida albicans SC5314]
 gi|46433523|gb|EAK92960.1| hypothetical protein CaO19.6701 [Candida albicans SC5314]
 gi|76573785|dbj|BAE44869.1| hypothetical protein [Candida albicans]
          Length = 691

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 146/475 (30%), Gaps = 89/475 (18%)

Query: 12  QENPRDAEIASHKLML------------------RTGMIHQHS-KGIYSWLPLGQKALDN 52
           +E   DA++   KL+                   +  M+  +   G Y   P      + 
Sbjct: 174 KEKKDDAKLEDAKLIGITVDKEKDFSSWYTQVVTKGEMLDYYDVSGCYILRPNSYFVWET 233

Query: 53  VNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYG 107
           +         + G      P   S   L  E    + +  E+  +        D+ +   
Sbjct: 234 IQDWFNARIKKLGVQNTYFPMFVSQRVLEKEKDHIEGFAPEVAWVTRAGNSELDEHIAIR 293

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 294 PTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTK 353

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + + +   ++   Y  ++    L ++P+                V     E + F   D+
Sbjct: 354 DAAANEVLQILDYYAGVYEE--LLAVPV----------------VKGKKTENEKFAGGDY 395

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                      F                    S + N  + +     K    R     + 
Sbjct: 396 TTTV-----EGFIAATGRGIQGGTSHHLGTNFSKMFNISVENPEGSEK---PRIFAYQNS 447

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           +   T+    M  T     G     ++  Y    +                       P 
Sbjct: 448 WGLSTRVIGVMIMTHSDNKGLVLPPRIAQYQAVVI-----------------------PV 484

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIV 406
            ++  +  A  +   +  EKI   L   G  V  D       G +FA  +L G PL+   
Sbjct: 485 GLTSKSTDAQRKEINEGAEKIEQSLRANGIRVTGDYREIYNPGWKFADWELKGVPLRFEF 544

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEE---------------VINYASHRFSNNR 446
           G K ++ ++V I  R  G +  + L+E               ++  A   F  +R
Sbjct: 545 GPKDLAGNQVTIVRRNDGKKYTVKLDELDTEVPKLLDQMHDDLLTKAKQEFDEHR 599


>gi|326802012|ref|YP_004319831.1| prolyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326552776|gb|ADZ81161.1| Prolyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 490

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 150/451 (33%), Gaps = 62/451 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ +     E    A++A H             +G     P G    + + A + +   
Sbjct: 8   RNEDYSQWYNELVSKADLAEHS----------AVRGCMVIKPYGYAIWEKMQAALDQMFK 57

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            TG      P       + +                            E    + F +  
Sbjct: 58  DTGHSNAYFPLFIPKSFFSK----------------------------EASHVEGFATEC 89

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSY 181
                       +   +R +      ++   E  +++      T E    ++Y     SY
Sbjct: 90  A-----------VVTHYRLKNDGNGQIIVDEEAKLEEELIVRPTSETIIWNTYKGWIQSY 138

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   +   +  +R E        + EF  L   G T    S++ +       N     
Sbjct: 139 RDLPILVNQWANVVRWEMRTRLFLRTAEF--LWQEGHTAHATSEEAVKETERMLNVYATF 196

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                ++                   +    E      + ++ G   + G  ++      
Sbjct: 197 AEEWMALPVVRGRKTENERFAGALDTY--CIEALMQDGKALQAGTSHFLGQNFAKAFDVK 254

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++  
Sbjct: 255 FTSKEGKLDYVWATSWGV-STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPIYKTEEES 313

Query: 362 RDA---CEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           R      + + A+L + G  V +DD   ++ G +FA  +L G P++V +G++ + +  VE
Sbjct: 314 RQIGALADNLIAQLKQKGISVKYDDRDTQRPGFKFAEWELKGVPVRVAIGARDLQNGTVE 373

Query: 418 IKHRLTGIREDMS---LEEVINYASHRFSNN 445
           +  R T  +E +    L E I         N
Sbjct: 374 LARRDTQSKETVPQTGLAEAIEQLLITIQEN 404


>gi|115898425|ref|XP_786677.2| PREDICTED: similar to glutamyl-prolyl-tRNA synthetase
            [Strongylocentrotus purpuratus]
 gi|115974011|ref|XP_001188946.1| PREDICTED: similar to glutamyl-prolyl-tRNA synthetase
            [Strongylocentrotus purpuratus]
          Length = 1621

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 127/437 (29%), Gaps = 72/437 (16%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
            +++ ++ MI  +   G Y   P      + + A         G      P   S A L  
Sbjct: 1152 QVITKSEMIEYYDVSGCYVLRPWSYSIWEKIVAFFDAGIKELGVENTYFPIFVSQAALER 1211

Query: 82   ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +         + +   PT E  M   +   ++S+R+LP    Q   
Sbjct: 1212 EKEHIADFSPEVAWVTRSGQSELAEPIAIRPTSETAMYTSYSKWVQSHRDLPIKLNQWCN 1271

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++     E        +   Y +++    L +IP+  
Sbjct: 1272 VVRWEFKHPQPFLRTREFLWQEGHTAWANREECVEEVYTILELYAQVYEH--LLAIPV-- 1327

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                          V  +    + F   DF           F                  
Sbjct: 1328 --------------VRGEKTLKEKFAGGDFTTTV-----EAFIKASGRAIQGATSHHLGQ 1368

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              + + + K  D  P   +          +F                           S+
Sbjct: 1369 NFAKMFDIKFEDPDPNAHKY---------VFQ-------------------------NSW 1394

Query: 318  GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYA 370
            GI   R +  +     D +G++ P  VA  +  +I                 D C     
Sbjct: 1395 GIT-TRTIGVMCMVHGDDQGLVLPPRVACVQAIVIPCGITAKTTDEQKNKLLDKCHNYVK 1453

Query: 371  RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G     D       G +F   +L G P+++ +G + +S  +     R  G +   
Sbjct: 1454 ILKAGGIRAQSDLRDNYSPGWKFNHWELKGVPVRIEIGPRDMSKQEFIACRRDNGAKTTF 1513

Query: 430  SLEEVINYASHRFSNNR 446
               + +   +      +
Sbjct: 1514 PEAQSVAKVTELLDQIQ 1530


>gi|119482073|ref|XP_001261065.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119409219|gb|EAW19168.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 652

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 138/438 (31%), Gaps = 70/438 (15%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G +   P      + +      E  + G    S P   S D L 
Sbjct: 102 QQVLTKGDMLDYYDVSGCFILKPASYFIWEEIQNWFNAEIKKVGVKNCSFPLFVSEDVLQ 161

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 162 REKDHIEGFAAEVAWVTHAGNTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 221

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E ++     M   Y RI+    L ++P+ 
Sbjct: 222 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTEEAAREEVLHMLGLYARIYEE--LLAVPV- 278

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                          V     E + F    +              I    S         
Sbjct: 279 ---------------VKGQKTEKEKFAGGLYTTTVEGYIPATGRGIQGGTSHGLGQNFSK 323

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                V +     + P+ K+      +  + +   T+                       
Sbjct: 324 MFGITVEDPS---AKPDEKKPPLYVWQ--NSWGLSTR----------------------- 355

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR----- 371
                   +  ++    D +G++ P  VA  +  ++ +    +   +  EK+YA      
Sbjct: 356 -------TLGVMVMIHSDNRGLVLPPRVAETQTIIVPVGITAKTSDEEREKLYAEIDSLV 408

Query: 372 --LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGI 425
             L   G     D   G   G +F   +L G PL++  G    +   V    R       
Sbjct: 409 SLLKVAGIRADSDKREGYSPGWKFNDWELRGVPLRIEFGPGESAGRYVTAARRDIPGKDG 468

Query: 426 REDMSLEEVINYASHRFS 443
           +  + ++E+         
Sbjct: 469 KSTIPIDELSTAVPALLE 486


>gi|115388031|ref|XP_001211521.1| hypothetical protein ATEG_02343 [Aspergillus terreus NIH2624]
 gi|114195605|gb|EAU37305.1| hypothetical protein ATEG_02343 [Aspergillus terreus NIH2624]
          Length = 592

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/417 (16%), Positives = 134/417 (32%), Gaps = 73/417 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G +   P      + +         + G    S P   S D L 
Sbjct: 93  QQVLTKGDMLDYYDVSGCFILKPASYSIWEEIQQWFNTHIKKIGVKNCSFPLFVSEDVLQ 152

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 153 REKDHIEGFAAEVAWVTHAGSTPLEKKIAIRPTSETVMYPYYSKWIRSHRDLPLRLNQWN 212

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT + +      +   Y +I+    L ++P+ 
Sbjct: 213 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTQDAAHEEVMYILDLYAKIYEE--LLAVPV- 269

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCS---KDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          V     E + F        ++  IP+         S         
Sbjct: 270 ---------------VKGQKTEKEKFAGGLYTTTVEGYIPATGRGIQGATSHGLGQNFSK 314

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                  D   +      P             H++                         
Sbjct: 315 MFNITVEDPSAKGDEKKPPI------------HVWQ------------------------ 338

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-- 371
             S+G+ + R +  ++    D  G++ P  VA  ++ ++ +    +   +  EK+YA   
Sbjct: 339 -NSWGL-STRTLGVMVMIHSDNHGLVLPPRVAETQVVIVPVGITAKTSDEEREKLYAEID 396

Query: 372 -----LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                L+  G     D   G   G +F   +L G PL++  G    +   V    R 
Sbjct: 397 GLTTVLTAAGVRATSDMREGYSPGWKFNDWELRGVPLRLEFGPGESAGHFVTAARRD 453


>gi|118575454|ref|YP_875197.1| threonyl-tRNA synthetase [Cenarchaeum symbiosum A]
 gi|166223332|sp|A0RU76|SYT_CENSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118193975|gb|ABK76893.1| threonyl-tRNA synthetase [Cenarchaeum symbiosum A]
          Length = 615

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 148/438 (33%), Gaps = 66/438 (15%)

Query: 25  LMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           LM R G+         G   + P G+     +   + E     G  E+  P +       
Sbjct: 200 LMKRMGIADYEPASDAGNMKFFPNGRLIKSLIERYVTERVVEYGGYEVETPIM------- 252

Query: 82  ESGRYDSYGKEML----------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
               YDS    M+             D   K++            +   +  SY+NLPF 
Sbjct: 253 ----YDSNHPSMVSYFNRFPARQYSIDSEGKSLFLRFAACFGQFLMAGDYQLSYKNLPFR 308

Query: 132 FYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            Y++    FR E      G+ R R F M D ++F      +       F     +  +LG
Sbjct: 309 LYELTRYSFRREQSGELVGLRRLRAFTMPDCHAFCTDMAQAVREAGVRFELSRDVIGQLG 368

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L +             L+ EF   A+ G                    +         +V
Sbjct: 369 LDAADYEMAIR-----LTEEFY--AENG----------------GAVREMVRRHGRPVLV 405

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GK 308
           E W   +            D   +   +S   I+V +    G +Y       F   + G+
Sbjct: 406 EMWKERFFYFVLKWEFNYIDGAGKASALSTDQIDVEN----GKRY----GIEFVDENNGR 457

Query: 309 DHYVQMG-SYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            H V +  S      RV+  ++E     S  G     P  ++P +  +I +   +++ R+
Sbjct: 458 QHPVILHNSPSGAIERVIYTLLEKAAADSARGTKPELPLWLSPVQARIIPV--GEELVRN 515

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A E +   ++  G     DD  E +G +   A+       ++VG K  +  ++ ++ R T
Sbjct: 516 ATE-LAKEMAGHGIRADVDDRNESMGKRIREAEKEWVRYILVVGEKEAASGRLSVRDRRT 574

Query: 424 GIREDMSLEEVINYASHR 441
           G   +M L++++     +
Sbjct: 575 GKSTEMGLDDLVEAVREQ 592


>gi|302384826|ref|YP_003820648.1| prolyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302195454|gb|ADL03025.1| prolyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 477

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/423 (15%), Positives = 146/423 (34%), Gaps = 69/423 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VES 83
           + +  +I   S KG  +  P G    +N+ + +       G   + +P      L   E 
Sbjct: 26  VKKAELIDYSSVKGCMAIKPAGYAIWENIQSELDRRFKEVGVENVYMPMFIPESLLQKEK 85

Query: 84  GRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +         + +   PT E +  D +   I+SYR+LP  + Q     
Sbjct: 86  DHVEGFAPEVAWVTHGGLEPLQERLCVRPTSETLFCDFYSREIQSYRDLPKLYNQWCSVV 145

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +RSREFL ++ ++   T E ++    +M   Y             + A  
Sbjct: 146 RWE-KTTRPFLRSREFLWQEGHTAHATAEEAEARTEQMLHLYADFCEE-------VLAMP 197

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
              G     E    A+                            +              +
Sbjct: 198 VVRGQKTDKEKFAGAEA---------------------------TYTIEALMHDGKALQS 230

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
              HN     +     + S +  ++ ++                            S+G+
Sbjct: 231 GTSHNFGSGFAKAFEIQYSDKENKLQYVHQ-------------------------TSWGM 265

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R++ A+I    D  G++ P  +AP ++ ++ ++   +   +   ++   LS     V
Sbjct: 266 -TTRLIGAIIMVHGDDNGLVLPPRIAPTQVIVVPVQQQKEGVLEKAFELKQVLSN--YKV 322

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +F+ +++ G P++V +G + + +++  +  R T  +  +S++++     
Sbjct: 323 KVDDSDKSPGWKFSESEMRGIPVRVEIGPRDILENQAVLVRRDTHEKITVSIDQLNAKVG 382

Query: 440 HRF 442
              
Sbjct: 383 ELL 385


>gi|324504606|gb|ADY41988.1| Bifunctional aminoacyl-tRNA synthetase [Ascaris suum]
          Length = 401

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 123/352 (34%), Gaps = 68/352 (19%)

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++  
Sbjct: 3   EPIAIRPTSETVMYPSYAKWVQSHRDLPIRLNQWCNVVRWEFKHPTPFLRTREFLWQEG- 61

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
                                                         H     A   ET+V
Sbjct: 62  ----------------------------------------------HTAFHTAKEAETEV 75

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           +   D            + D++++  +  + +             +   +P N     R 
Sbjct: 76  YQILDLYA-------QIYTDLLAIPVVKGRKSEKEKFAGGDFTTTVEAYVPVNG----RS 124

Query: 282 IEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           I+     + G  +S     +F+  D G   Y    S+G+ + R + A+I    D  G++ 
Sbjct: 125 IQGATSHHLGQNFSKMFDISFEEPDKGGKAYAWQNSWGL-STRTIGAMIMIHGDDNGLVL 183

Query: 341 PDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           P  VA  ++ ++ +    Q   +         E+I   L  VG     D       G +F
Sbjct: 184 PPRVAAIQMIVVPVGVTAQTSEEQRKMLICKAEEITDLLVSVGIRAESDLRDNYSPGWKF 243

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +L G P++V VG + V++++V    RL+G +  + +  +   +    + 
Sbjct: 244 NHWELKGVPVRVEVGPRDVANNQVTCVIRLSGEKRAIPVSGLAEASKKMLNE 295


>gi|332970051|gb|EGK09049.1| proline--tRNA ligase [Desmospora sp. 8437]
          Length = 488

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 132/405 (32%), Gaps = 68/405 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + P G +  + +   +      TG      P L     L  E    + +  E+  +
Sbjct: 39  GCIVFKPDGFELWERIQEAMDRRFKETGHRNAYFPMLIPESFLQKEKEHVEGFNPELPWV 98

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E ++  ++               Q     RD           
Sbjct: 99  TEAAGEKLEERLALRPTSETMIGHMYS--------------QWIHSHRD----------- 133

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                                   +   +  +F          R E   +    + EF  
Sbjct: 134 ---------------------LPVLINQWANVF----------RWEKRTMPFLRTSEF-- 160

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L   G T     ++     +       + +  + +I         +       + +    
Sbjct: 161 LWQEGHTAHATEEEARQETMQMLEIYREVVEQVLAIPVWKGQKTPSERFAGAVETY--SI 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y G  ++      F   D +  YV   S+G  + R++ ++I   
Sbjct: 219 EAMMKDGKAVQAGTSHYLGENFAKGFDIKFLDRDNQLKYVHTTSWG-TSTRLIGSMIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D +G+  P  VAP ++ +I +      +   +  + ++  L   G  V  D   E  G 
Sbjct: 278 GDDRGLALPPRVAPTQVVMIPVGPVKLREKVMERFDPLFDDLQAAGVRVRADLREETPGW 337

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +F   ++ G PL++ +G + V   +V +  R TG +  +++++ +
Sbjct: 338 KFNEWEMRGVPLRLEIGPRDVDKGEVVLARRDTGEKMAVAIDQAV 382


>gi|228989573|ref|ZP_04149557.1| Prolyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
 gi|228770110|gb|EEM18690.1| Prolyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
          Length = 476

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 138/443 (31%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++  + 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDGKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               ESG  + Y   M        K       H E         
Sbjct: 61  -------------------KESGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQEETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LEKATQLQGRIQKV-ARVKIDASNKTPGWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++    +     
Sbjct: 364 DTKEKEFVSMDQLEERITSLLDE 386


>gi|297184115|gb|ADI20234.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 501

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 137/434 (31%), Gaps = 51/434 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    + + A +      TG +    P       + 
Sbjct: 27  NELVVKADLAQNSGVRGSMVIKPYGFAIWERIQADLDRRFKETGHMNAYFPLFIPKSYFS 86

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR- 140
           +                            E    D F                +   +R 
Sbjct: 87  K----------------------------EASHVDGFAKECA-----------VVTHYRL 107

Query: 141 -DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            D+      V+     L ++      +      +Y     SY  +   +   +  +R E 
Sbjct: 108 MDDPNGGGVVVDPSAKLEEELIVRPTSETIIWDTYKDWIQSYRDLPILVNQWANVVRWEM 167

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF+      E     +             D       + +           
Sbjct: 168 RTRLFLRTAEFLWQ----EGHTAHATKQEAITEAETMLDVYTDFVQDVMAIPVLRGLKTE 223

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +     L     E      + ++ G   + G  ++      F+  +GK  YV   S+G+
Sbjct: 224 GERFAGALETYCIEALMQDGKALQAGTSHFLGQNFAKAFEVKFQNKEGKQEYVWATSWGV 283

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVG 376
            + R++ A+I +  D  G++ P  +AP+++ ++ I    +      +  E +  +L   G
Sbjct: 284 -STRLMGALIMTHSDDNGLVLPPKLAPYQVVIVPIYKGQEQLDAISEVAEDLMGQLRAQG 342

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+    + G +F   +L G PL++ +G K +    VE+  R T  ++ +  +EV 
Sbjct: 343 ITVKYDNRDTHKPGWKFNQYELQGIPLRIAIGPKDLEKGSVELARRDTLTKQFVDQKEVS 402

Query: 436 NYASHRFSNNRPVL 449
                     +  L
Sbjct: 403 TKVPELLDEIQRTL 416


>gi|207343684|gb|EDZ71074.1| YKL194Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 358

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 117/343 (34%), Gaps = 32/343 (9%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADL 79
            S +  L   M    S G   +LP G K  + +   ++ +Q    G  E+  P +    L
Sbjct: 42  VSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL 99

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W +SG +++Y  +M ++   D   +     P +      IF    +SY  LP  F     
Sbjct: 100 WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSP 159

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R+E      G+ R R+F   D + F  TP   K            +++++    +   
Sbjct: 160 LHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNKI-FPFVK-- 215

Query: 197 AESGPIGGDLSHE-FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 GG  +   + +   T            +          ++      +     A 
Sbjct: 216 ------GGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           Y    D+      D L +  +V+   ++    F    ++       FK  D      + +
Sbjct: 270 YGPKLDIMVT---DHLRKTHQVATIQLD----FQLPERF----DLKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                G++    A++  S++G    WP  + P++  +I +   
Sbjct: 319 HRATFGSIERFMALLIDSNEG---RWPFWLNPYQAVIIPVNTK 358


>gi|228995766|ref|ZP_04155427.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
 gi|228764010|gb|EEM12896.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
          Length = 476

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 138/443 (31%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++  + 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDGKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               ESG  + Y   M        K       H E         
Sbjct: 61  -------------------KESGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQEETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LEKATQLQGRIQKV-ARVKIDASNKTPGWKFNEYEMKGVPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++    +     
Sbjct: 364 DTKEKEFVSMDQLEERITSLLDE 386


>gi|57641105|ref|YP_183583.1| threonyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|73919819|sp|Q5JGC8|SYT_PYRKO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57159429|dbj|BAD85359.1| Threonyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 626

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 151/447 (33%), Gaps = 52/447 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            I +    D E    +LML   ++        G   + P G+     +   + E+    G
Sbjct: 195 EIAKNRVADREPPHVRLMLEQELVDYEPGSDAGNLRYYPKGRLIKSLLEQYVTEKVIEYG 254

Query: 66  AIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A+E+  P +   +   L     R+ +       +    DK              I +   
Sbjct: 255 AMEVETPIMYDFEHPALEKYLNRFPARQ----YVVKSGDKKFFLRFAACFGQFLIKKDAT 310

Query: 123 KSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            SYRNLP   Y++    FR E      G+ R R F M D ++     + +   + K +  
Sbjct: 311 ISYRNLPLRMYELTRYSFRREKSGELSGLRRLRAFTMPDMHTVARDLKQAMDEFKKQYKL 370

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +   +GL                  E   +A                       +  
Sbjct: 371 SMEVLKGVGLTP----------------EDYEVA-------IRFTRDFWEQNRDFIVELA 407

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            II    ++E W   +            D+L +   +S   I+V +   FG KY      
Sbjct: 408 KIIGKPVLIEMWDQRFFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFGIKY------ 461

Query: 301 TFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSHD----GKGIIWPDSVAPFKISLINI 354
                +GK+    +   S      RV+ A++E        G   ++P  ++P ++ +I +
Sbjct: 462 --YDEEGKERTPLILHCSPSGAIERVMYAILEKQAKLQEKGIKPMYPLWLSPIQVRVIPV 519

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D    +  +L      V  DD G+++  +   A+    P  ++VG      +
Sbjct: 520 ---SDEVMDYALYVAGKLEGAKIRVDVDDTGDRLNKKIRKAEKEWIPYIIVVGRNEKEQN 576

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++ R  G + +M LE++I     +
Sbjct: 577 TVTVRRRSDGRQVEMQLEDLIREIKGQ 603


>gi|302657268|ref|XP_003020359.1| hypothetical protein TRV_05552 [Trichophyton verrucosum HKI 0517]
 gi|291184187|gb|EFE39741.1| hypothetical protein TRV_05552 [Trichophyton verrucosum HKI 0517]
          Length = 581

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 106/192 (55%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +SGR      E+ R  
Sbjct: 27  GVFHLLPLGLRVQEKLERLIDKHMRKLNASKLSLSSLSSQALWKKSGRLHDDDSEVFRFV 86

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           DR     +  PTHEE +T +    IKSYR+LP   YQI  K+RDE RPR G++R REF+M
Sbjct: 87  DRKKTPFLLAPTHEEEITTVVSGLIKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVM 146

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           KD Y+FD T   +  +YN +  +Y+ +F  L L  +   A SG +GG+LSHEF   +  G
Sbjct: 147 KDLYTFDSTEAEAIKTYNTVKEAYISLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKG 206

Query: 218 ETQVFCSKDFMD 229
           E  +        
Sbjct: 207 EDTIVSCSKCEY 218



 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 17/193 (8%)

Query: 268 FDSLPENKRVSARG---IEVGHIFYFGTKYSLPMSATFK---------GADGK--DHYVQ 313
            D  P     + +    IE+ H F+ GT+YS  + A            G  GK     +Q
Sbjct: 389 GDECPNCGSPTLKTDQSIELAHTFHLGTRYSEVLQANVSINPAILAGAGQKGKQEPVPIQ 448

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG +GIG  R+++AV +   D KG+ WP ++APF+++++      +   +    I  + +
Sbjct: 449 MGCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVAVVP-GKGLEKEGELVYDIVTQTT 507

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSL 431
           +   D   DD  +    +   AD++G+P+ + VG     + +KVE++ R  G  R  +SL
Sbjct: 508 QQPIDTILDDRKKDFAWKLRDADMIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKVSL 567

Query: 432 EEVINYASHRFSN 444
           EEV    S   S 
Sbjct: 568 EEVPELVSSLLSQ 580


>gi|167044354|gb|ABZ09032.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG6C9]
          Length = 616

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 139/422 (32%), Gaps = 63/422 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM--- 93
            G   + P G+     +   + ++    G IE+  P +           YDS+   M   
Sbjct: 216 SGNMRFYPNGRLIKSQIEQYVTDKVRDYGGIEVETPIM-----------YDSHHPSMESY 264

Query: 94  ---LRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKFRDELRP 145
                      D   + +    +       +      SY+NLP+  Y++    FR E   
Sbjct: 265 FNRFPARQYSIDSEGRHLFLRFSACFGQFLMASDFQLSYKNLPYKLYELTRYSFRREQSG 324

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+ R R F M D ++F      +   + K F     +   LG++             
Sbjct: 325 ELVGLRRLRAFTMPDCHAFCKDMPQAIDEFGKRFDLSREVLSGLGIEE------------ 372

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +++       E                        +    +VE W   +        
Sbjct: 373 ---NDYETGIRFTED--------FYNKNKELIKQMVSKVGKPVLVEMWKEKFFYFVLKWE 421

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GSYGIGAM 322
               D L     +S   I+V +   +G         TF     +  Y  +   S      
Sbjct: 422 FNFVDDLGRASALSTDQIDVENAKRYG--------ITFTDEKNEQQYPIILHNSPSGAVE 473

Query: 323 RVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           RV+ A++E       DGK   +P  +AP ++ LI +K       +    +  +L++    
Sbjct: 474 RVIYALLEKFAKQIKDGKRPQFPLWLAPIQVRLIPLKDD---FLEFSSDLANKLTEQNIR 530

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  + IG +   A+       +++G + V+ S + ++ R TG    +S+E+ +   
Sbjct: 531 VDIDDRNDTIGKRIRDAEKEWISYVLVIGEREVNSSSLSVRDRTTGDVRQLSIEDFVKEI 590

Query: 439 SH 440
             
Sbjct: 591 KD 592


>gi|238883498|gb|EEQ47136.1| hypothetical protein CAWG_05697 [Candida albicans WO-1]
          Length = 691

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 146/475 (30%), Gaps = 89/475 (18%)

Query: 12  QENPRDAEIASHKLML------------------RTGMIHQHS-KGIYSWLPLGQKALDN 52
           +E   DA++   KL+                   +  M+  +   G Y   P      + 
Sbjct: 174 KEKKDDAKLEDAKLIGITVDKEKDFSSWYTQVVTKGEMLDYYDVSGCYILRPNSYFVWET 233

Query: 53  VNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYG 107
           +         + G      P   S   L  E    + +  E+  +        D+ +   
Sbjct: 234 IQDWFNARIKKLGVQNTYFPMFVSQRVLEKEKDHIEGFAPEVAWVTRAGNSELDEHIAIR 293

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT 
Sbjct: 294 PTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTK 353

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + + +   ++   Y  ++    L ++P+                V     E + F   D+
Sbjct: 354 DAAANEVLQILDYYAGVYEE--LLAVPV----------------VKGKKTENEKFAGGDY 395

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                      F                    S + N  + +     K    R     + 
Sbjct: 396 TTTV-----EGFIAATGRGIQGGTSHHLGTNFSKMFNISVENPEGSEK---PRIFAYQNS 447

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           +   T+    M  T     G     ++  Y    +                       P 
Sbjct: 448 WGLSTRVIGVMIMTHSDNKGLVLPPRIAQYQAVVI-----------------------PV 484

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIV 406
            ++  +  A  +   +  EKI   L   G  V  D       G +FA  +L G PL+   
Sbjct: 485 GLTSKSTDAQRKEINEGAEKIEQSLRANGIRVTGDYREIYNPGWKFADWELKGVPLRFEF 544

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEE---------------VINYASHRFSNNR 446
           G K ++ ++V I  R  G +  + L+E               ++  A   F  +R
Sbjct: 545 GPKDLAGNQVTIVRRNDGKKYTVKLDELDTEVPKLLDQMHDDLLTKAKQEFDEHR 599


>gi|241957631|ref|XP_002421535.1| proline--trna ligase, putative; prolyl-tRNA synthetase, putative
           [Candida dubliniensis CD36]
 gi|223644879|emb|CAX40877.1| proline--trna ligase, putative [Candida dubliniensis CD36]
          Length = 688

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 144/474 (30%), Gaps = 89/474 (18%)

Query: 13  ENPRDAEIASHKLML------------------RTGMIHQHS-KGIYSWLPLGQKALDNV 53
           E   DA++   KL+                   +  M+  +   G Y   P      + +
Sbjct: 172 EKKDDAKLEDAKLIGITVDKEKDFSSWYTQVVTKGEMLDYYDVSGCYILRPNSYFVWETI 231

Query: 54  NAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGP 108
                    + G      P   S   L  E    + +  E+  +        D+ +   P
Sbjct: 232 QDWFNARIKKMGVQNTYFPMFVSQRVLEKEKDHIEGFAPEVAWVTRAGNSELDEHIAIRP 291

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT +
Sbjct: 292 TSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTKD 351

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +     ++   Y  ++    L ++P+                V     E + F   D+ 
Sbjct: 352 AAAEEVLQILDYYAGVYEE--LLAVPV----------------VKGKKTENEKFAGGDYT 393

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                     F                    S + N  + +     K    R     + +
Sbjct: 394 TTV-----EGFVAATGRGIQGGTSHHLGTNFSKMFNISVENPEGSEK---PRIFAYQNSW 445

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              T+    M  T     G     ++  Y    +                       P  
Sbjct: 446 GLSTRVIGVMIMTHSDNKGLVLPPRIAQYQAVVI-----------------------PVG 482

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVG 407
           ++  +  A  +   +  EKI   L   G  V  D       G +FA  +L G PL+   G
Sbjct: 483 LTSKSTDAQRKEINEGAEKIEQSLRANGIRVTGDYREIYNPGWKFADWELKGVPLRFEFG 542

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEE---------------VINYASHRFSNNR 446
            K ++ ++V I  R  G +  + L+E               ++  A   F  +R
Sbjct: 543 PKDLAGNQVTIVRRNDGKKYTVKLDELDTQVPKLLDQMHDDLLAKAKQEFDEHR 596


>gi|161528434|ref|YP_001582260.1| threonyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|238686913|sp|A9A2B1|SYT_NITMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160339735|gb|ABX12822.1| threonyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 621

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 136/423 (32%), Gaps = 63/423 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-- 94
            G   + P G+     +   + +     G  E+  P +  ++              M+  
Sbjct: 221 SGNMRFFPNGRLMKSLIERYVTDRVKEYGGYEVETPIMYDSE-----------HPSMVSY 269

Query: 95  --RL------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKFRDELRP 145
             R        D   K +            +      SY+NLP+  Y++    FR E   
Sbjct: 270 FNRFPARQYNIDSEGKKLFLRFAACFGQFLMANQFQMSYKNLPYKLYELTRYSFRREQSG 329

Query: 146 RF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+ R R F M D ++F      +       F     +   LG+              
Sbjct: 330 ELVGLRRLRAFTMPDCHAFCKDIPQAVDEIKVRFDLSQSVLKELGID------------- 376

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                     ++         +       S   +         +VE W   +        
Sbjct: 377 ----------ESDYDMAIRFTEDFYNENKSAIEELVKKHGRPVLVEMWKEKFFYFVLKWE 426

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GSYGIGAM 322
               D+L +   +S   I+V +    G +Y       F   +    +  +   S      
Sbjct: 427 FNFIDNLGKASALSTDQIDVEN----GDRY----GIEFVDENNTAQHPIILHNSPSGAIE 478

Query: 323 RVVAAVIESSHD----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R++ A++E + D    GK    P  +AP ++ +I +K   +   D C  +  ++S     
Sbjct: 479 RIIYALLEKAADDSKKGKKPQLPLWLAPTQVRIIPLK---EEFYDFCNNLCDKISAQNVR 535

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E IG +   A+       +++G K      + I+ R TG   ++S ++ +N  
Sbjct: 536 VDVDDRNESIGKRIREAEKEWIQYILVIGEKEAGSENLSIRDRQTGNVREVSFDDFMNEI 595

Query: 439 SHR 441
           + +
Sbjct: 596 NEQ 598


>gi|124027657|ref|YP_001012977.1| bifunctional aminoacyl-tRNA synthetase [Hyperthermus butylicus DSM
           5456]
 gi|123978351|gb|ABM80632.1| Bifunctional aminoacyl-tRNA synthetase [Hyperthermus butylicus DSM
           5456]
          Length = 380

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 76/415 (18%), Positives = 134/415 (32%), Gaps = 71/415 (17%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY 86
                    KG+  WLP G +    +  ++RE  + TG  E+ +P L    L   ES   
Sbjct: 26  FYDYGRYPVKGMGIWLPYGFQLRRRIIELVREVLDSTGHEEILMPLLIPEHLLRKESEHI 85

Query: 87  DSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
             +  E+  +     + +       PT E  +T +    IKS                  
Sbjct: 86  RGFEGEVYWVTHGGHEPLDVKLALRPTSETSITYMESFWIKS------------------ 127

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                                          Y ++   Y +I      ++      + P+
Sbjct: 128 -------------------------------YRQLPKKYYQIVSIFRYETK----ATRPM 152

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                      A T       +   +   I      FD++     I  +      A +  
Sbjct: 153 IRLREVTTFKEAHTVHDSFADADRQVAEAIELYKKIFDELGIPYVISRRPEWDKFAGAVY 212

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                            + +++G + + G  +++P     +  D    Y    SYGI + 
Sbjct: 213 TVAFD------TIMPDGKTLQIGTVHHLGQNFTVPFDVKIQLRDESIDYAWQTSYGI-SD 265

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-----CRDACEKIYARLSKVGC 377
           R+VA VI    D +G + P +VAP ++ +I I A D         +  EK+   L K G 
Sbjct: 266 RIVATVIAIHGDDRGAVLPPNVAPIQVVVIPIPAGDDEEKKRLVAEHLEKVKEVLKKAGI 325

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
               DD    + G +F   +  G P+++ VG +      V +  R T  +  + L
Sbjct: 326 RFRVDDREDVRPGRKFYEWEAKGVPVRIEVGLREAETGTVLVARRDTLEKTVVKL 380


>gi|207742946|ref|YP_002259338.1| threonyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206594341|emb|CAQ61268.1| probable threonyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 268

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 36/299 (12%)

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+MR R F+  DA+ F  T                 ++   G +++ ++    P     +
Sbjct: 4   GLMRVRGFVQDDAHIF-CTEGQIMAEAKDFNDLAFSVYEDFGFENVAVKLALRPDKRAGT 62

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+ G      +       +P E   +   +                        
Sbjct: 63  DEIWDHAEEGLRTALRACGVEWEELPGEGAFYGPKVEY---------------------- 100

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVA 326
                  K    R  + G +          + A +   D  +   V +    +G+     
Sbjct: 101 -----HIKDAIGRSWQCGTL-QLDLVLPERLGAEYVAEDNSRKRPVMLHRAILGSFERFL 154

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++  +H G   +W   +AP ++ +++I        +  E +   L K G     D   E
Sbjct: 155 GILLENHAGALPLW---LAPEQVVVMSIA---DAHAEYAETVAQSLQKQGFRASADLRNE 208

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +I  +     L   P  V+VG K    ++V ++ R       M +   +    +  +N 
Sbjct: 209 KITYKIREHSLQKVPYLVVVGDKERDGNQVAVRARGNVDLGSMPVSAFVERLQNDLANK 267


>gi|298709965|emb|CBJ31687.1| Proline--tRNA ligase, central part [Ectocarpus siliculosus]
          Length = 492

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 133/416 (31%), Gaps = 85/416 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG     P G    D     + +            P L     L  E+   D + KE   
Sbjct: 122 KGCMVIRPWGMAIWDAFKDDMDKRIKTYDVDNAYFPLLIPQSFLTKEAEHVDGFAKECAV 181

Query: 96  LADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +                     ++ ++  PT E V+  ++R  I SYR+LP    Q    
Sbjct: 182 VTHHRLCKSDDGTLIPDPEAKLEEPLVVRPTSETVIWTMYRKWIDSYRDLPLKLNQWANV 241

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  ++RS EFL ++ +    T   +K          L  +           A 
Sbjct: 242 VRWEMRTR-PLLRSAEFLWQEGH----TAHATKEEALSCAQEMLVEYST---ACRETLAL 293

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              +G     E    AD  ET    +     +                            
Sbjct: 294 PTVMGVKSPKERFAGAD--ETYTIEALMQNGW---------------------------- 323

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                                  ++ G   + G  ++      ++  D K   V   S+G
Sbjct: 324 ----------------------ALQSGTSHFLGQNFARAFEVYYQTPDEKRELVWATSWG 361

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----HDQVCRDACEKIYARLSK 374
           +   R++ A++ +  D  G+  P +VAP ++ ++ I         +   A + +  +L  
Sbjct: 362 VT-TRLMGAMVMTHSDDFGLRLPPAVAPKQVVIVPITKGPGEDTDLVNKAVDGVVDQLKA 420

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIRED 428
            G  V  D+    + G+++   +  G PL V +G K       + +K +  G R+ 
Sbjct: 421 AGVRVKVDERPNMRPGAKYFQWEAKGVPLPVELGPKNPKAGVAIVLKKKGGGGRQS 476


>gi|333030425|ref|ZP_08458486.1| Prolyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332741022|gb|EGJ71504.1| Prolyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 493

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/430 (14%), Positives = 146/430 (33%), Gaps = 49/430 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +  Q + +G     P G    + +   + +    TG +    P L       
Sbjct: 20  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLS 79

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                                        E    + F        +      +       
Sbjct: 80  R----------------------------EADHVEGFAKECAVVTHYRLKNAEDGS---- 107

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
                 GV+   E  +++      T E    ++Y     SY  +       +   R E  
Sbjct: 108 ------GVVVDPEAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMR 161

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 + EF  L   G T     ++  +  +   N   +      ++        A+  
Sbjct: 162 TRLFLRTAEF--LWQEGHTAHETREEAEEETVKMLNVYSEFAEKYMAVPVVKGVKTASER 219

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                  +    E      + ++ G   + G  ++      F   + +  YV   S+G+ 
Sbjct: 220 FAGALDTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVKFVNRENQLEYVWATSWGV- 276

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGC 377
           + R++ A+I +  D  G++ P ++AP ++ ++ I   ++      +    I  +L  +G 
Sbjct: 277 STRLMGALIMTHSDDNGLVLPPALAPIQVVIVPIFKGEEQLAKIDERVNPIINKLKGMGV 336

Query: 378 DVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            V +D+   ++ G +FA  +L G P+++++G++ + +  +E+  R T  +   S+E +  
Sbjct: 337 SVKYDNADNKRPGFKFADYELKGVPVRLVLGARDLENGTIEVMRRDTLEKTTHSIEGIEE 396

Query: 437 YASHRFSNNR 446
           Y        +
Sbjct: 397 YVKDLLDEMQ 406


>gi|51102320|gb|AAT95873.1| prolyl-tRNA synthetase [Entamoeba terrapinae]
          Length = 410

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 144/427 (33%), Gaps = 69/427 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           ++++++G+I  +   G Y   P      +N+   I +   R G      P   S A L  
Sbjct: 2   QIVVQSGLIEYYDISGCYILRPAAYGIWENIQQFIDKRIKRMGVENTYFPCFVSQAALKK 61

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E VM   F++ I  +R+LP    Q   
Sbjct: 62  EEDELNGFTPEVAWVTKSGSSDLQEPIALRPTSETVMYPAFKNWITGHRDLPLKVNQWCN 121

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E    +  +R+REFL ++ ++        +    ++   Y  ++    L ++P+  
Sbjct: 122 VVRWEFSHPYPFIRTREFLWQEGHTAYANQPDCEKECRQIMELYASVYED--LLAVPV-- 177

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S         GET             P           + +      A  +
Sbjct: 178 ----IRGKKS--------KGET------------FPGAYYSLTVECIIPTNGRSVQAATS 213

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                   KLF            GIE           +      ++ + G          
Sbjct: 214 HHLGQTFSKLF------------GIEF-------EDINKKKQLVYQNSWG---------- 244

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSK 374
              + R +   + +  D KGI+ P   A  ++ +I I      +        ++   L  
Sbjct: 245 --LSTRSIGVTVMTHGDDKGIVIPPRAANKQVVIITIHHKGSPNDEMDAKANELTEMLLD 302

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                F D       G +F+  ++ G P+++ +G +  + SKV I  R  G + + S  +
Sbjct: 303 NDIRAFADTNDMHNPGWKFSEYEMRGIPIRIELGQRDYAGSKVVIVRRDNGAKCESSWTD 362

Query: 434 VINYASH 440
           ++     
Sbjct: 363 LVATVRK 369


>gi|170063637|ref|XP_001867188.1| bifunctional aminoacyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167881196|gb|EDS44579.1| bifunctional aminoacyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 1677

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 138/441 (31%), Gaps = 77/441 (17%)

Query: 11   LQENPRDA--EIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    D   E  S +++ +  MI  +   G Y            + A    E  + G  
Sbjct: 1179 LEATKEDCLPEWYS-QVITKGEMIEYYDVSGCYILRHWSFAVWKAIKAWFDAEITKMGVK 1237

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHI 122
            E   P   S A L  E      +  E+  +    +    + +   PT E VM   +   I
Sbjct: 1238 ECYFPIFVSRAALEREKDHIADFAPEVAWVTKSGESDLAEPIAVRPTSETVMYPAYAKWI 1297

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +SYR+LP    Q     R E +          FL    + +    +    ++     +  
Sbjct: 1298 QSYRDLPIRLNQWNNVVRWEFKHPQP------FLRTREFLW----QEGHTAFATQAEATE 1347

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   L L    +  +   I                             +    T+ +  
Sbjct: 1348 EVLQILEL-YAQVYTDLLAI---------------------------PVVRGRKTEKEKF 1379

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +          A                    S R I+     + G  +S      +
Sbjct: 1380 AGGDFTTTVEAFISA--------------------SGRAIQGATSHHLGQNFSKMFDIVY 1419

Query: 303  KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAH 357
            +  + K+  YV   S+GI   R +  +I    D +G++ P  VA  +  ++         
Sbjct: 1420 EHPETKEKEYVYQNSWGIT-TRTIGVMIMVHADNQGLVLPPRVACIQAIIVPCGITANTT 1478

Query: 358  DQV---CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            D+      D C+++ A L K G     D       G ++   +L G P++V +G K + +
Sbjct: 1479 DEERKTLYDNCKELEAELVKAGVRCEGDYRDNYSPGWKYNHWELKGVPIRVELGFKDLKN 1538

Query: 414  SKVEIKHRLTGIREDMSLEEV 434
             +     R TG +  +  E  
Sbjct: 1539 KQFVAVRRDTGDKITVKREAA 1559


>gi|30018647|ref|NP_830278.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|229125889|ref|ZP_04254914.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
 gi|81435975|sp|Q81IE9|SYP2_BACCR RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|29894188|gb|AAP07479.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|228657547|gb|EEL13360.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
          Length = 476

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVLPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 364 DTKEKEFVPMDQLEERIPALLEE 386


>gi|296816643|ref|XP_002848658.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238839111|gb|EEQ28773.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 589

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 117/206 (56%), Gaps = 2/206 (0%)

Query: 26  MLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +LR G + ++    G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +S
Sbjct: 22  ILRAGCLQKYHPYSGVFHLLPLGLRVQEKLERLIDKHMRKLNASKLSLSSLSSQSLWKKS 81

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR      E+ RL DR    ++  PTHEE +T +  S +KSYR+LP   YQI  K+RDE 
Sbjct: 82  GRLHEGDSEVFRLLDRKKTPLLLAPTHEEEITTVISSLVKSYRDLPLRVYQISRKYRDEP 141

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR G++R REF+MKD Y+FD T   + ++YN +  +Y+ +F  L L  +   A SG +G
Sbjct: 142 RPRHGLLRGREFVMKDLYTFDSTEAEAINTYNTVKDAYMELFEELKLPFVVASAASGNMG 201

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMD 229
           G+LSHEF   +  GE  +        
Sbjct: 202 GNLSHEFHFPSSKGEDTIVSCSQCEY 227



 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 171/469 (36%), Gaps = 58/469 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD     H L+     + +    +Y++     +A++  N +           E+ +P + 
Sbjct: 138 RDEPRPRHGLLRGREFVMKD---LYTFDSTEAEAINTYNTVKDAYMEL--FEELKLPFVV 192

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     SG                 +  I   +  E    +F   + S ++   +    
Sbjct: 193 ASA---ASGNMGGNLSHEFHFPSSKGEDTIVSCSQCE---YVFNEELASGKSPNGSI--- 243

Query: 136 QLKFRDELRPR-FGVMR---------------------SR----EFLMKDAYSFDLTPEG 169
               R E  P   G+ R                      R    +FL+ +  S     E 
Sbjct: 244 --SHRLETNPACDGLGRQEAAAISTGQWTAISRDRKTLVRAFYPKFLITNGESQPAQREV 301

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++HS   +  +Y  I   +G+K      +AE          +  VL           +  
Sbjct: 302 NQHSLKSIVSAY-GIDLDIGVKDALATWKAEIQKRPQTARQDIHVLDVYDSRVRVYDRPP 360

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           +   +     +  +I S        T                +   +   + + IE+ H 
Sbjct: 361 IKDLMEGVTCNDLNIQSSLLDRFPGTDAGLDLLRARAGDDCPNCGNSALKTYQAIELAHT 420

Query: 288 FYFGTKYSLPMSATF--------KGADGKDH--YVQMGSYGIGAMRVVAAVIESSHDGKG 337
           F+ GT+YS  + A          +G  GK     +QMG +GIG  R+++AV +   D KG
Sbjct: 421 FHLGTRYSGVLQANVAINPATLEEGQQGKTELVPIQMGCHGIGVSRMISAVSDILADNKG 480

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP ++APF+++++  K  ++      + +  + +    D   DD  +    +   ADL
Sbjct: 481 LNWPQAIAPFQVAVVPAKGLEKEAELVYDSVAGQ-NGETVDTILDDRNKDFIWKLRDADL 539

Query: 398 LGFPLQVIVGSKFVSDS-KVEIKHR-LTGIREDMSLEEVINYASHRFSN 444
           +G+P+ + VG K  +   +VE++ R L  +R  +SLEE+    S   S 
Sbjct: 540 VGYPIILAVGKKSWNAGNQVEVQCRQLENLRTTVSLEEIPKLVSSLLSK 588


>gi|11498158|ref|NP_069384.1| threonyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334363|sp|O29703|SYT_ARCFU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2650076|gb|AAB90685.1| threonyl-tRNA synthetase (thrS) [Archaeoglobus fulgidus DSM 4304]
          Length = 619

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 152/442 (34%), Gaps = 56/442 (12%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E  R  E+A ++    +G I         + P G+     +   I  +    GA+E+  P
Sbjct: 199 EYMRRLELADYEPASDSGHIR--------YYPKGRLVKTLLEQFITRKCIDYGAMEVETP 250

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +   +      RY         +   + +              +  S   +YRNLP   
Sbjct: 251 IMYDRNH-PTLRRYLERFPARQYIIKGDKREFFLRFAACFGQFLMLSSSTITYRNLPLKI 309

Query: 133 YQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           Y++    FR E R    G+ R R F M D ++     E +K  +   +   + +   +GL
Sbjct: 310 YELTRYSFRKEQRGELVGLRRLRAFTMPDMHTVAKDMEQAKEEFFNQYRLSVEVLREIGL 369

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +          I  D   E                               DI+    ++E
Sbjct: 370 EPEDYEVAVR-ITKDFYEE----------------------NREFVHSLVDILKKPILIE 406

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            W   +            D+L +   +S   I+V +   +G         TF  +DGK+ 
Sbjct: 407 MWDHRFFYFVLKFEFNFVDALDKASALSTVQIDVENAERYG--------ITFVDSDGKEK 458

Query: 311 YVQM--GSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +  +   S      RV+ A++E       +G+  + P  ++P ++ +I +    +   DA
Sbjct: 459 HPYILHCSVSGAVERVMYALLEKAKFMLDEGRLPMLPVWLSPTQVRVIPV---SERFVDA 515

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--- 421
             KI   +++ G  V  DD  E +G +   A     P   +VG K +   K+ +  R   
Sbjct: 516 AIKIADDIARNGIRVDVDDRNETLGKKIRDAQTEWIPYIAVVGEKEIESGKLAVTVRAES 575

Query: 422 --LTGIREDMSLEEVINYASHR 441
                 R +MS EE+       
Sbjct: 576 TQKEQKRVEMSAEELAERVRSE 597


>gi|218677881|ref|ZP_03525778.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 340

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 17/215 (7%)

Query: 16  RDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            +AE   H+ + R        +   G+  W   G +    + A +R         E++ P
Sbjct: 126 AEAEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-AVDYEEVNAP 184

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEEVMTDIFRSH 121
            +    LW  SG +  Y + M  +            + +++     P +      IF+  
Sbjct: 185 QVLDTSLWETSGHWGWYQENMFAVKSAHAMTHSEDKEADNRVFALKPMNCPGHVQIFKHG 244

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR LP    +  L  R E      G+MR R F   DA+ F  T E       K+   
Sbjct: 245 LKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIF-CTDEQMAAECLKINDL 303

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            L ++   G K I ++  + P     S      A+
Sbjct: 304 ILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAE 338


>gi|260655129|ref|ZP_05860617.1| proline--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260630051|gb|EEX48245.1| proline--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 478

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 152/460 (33%), Gaps = 92/460 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L I++     AE+A +  +    +I           P G    + +          
Sbjct: 13  SQWYLDIIKV----AELADYAPVRGCMVIR----------PTGYALWEEIQQKFDAAFKE 58

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIF 118
           TG      P L  A  L  E+   + +  E   + +    + ++ +I  PT E V+  ++
Sbjct: 59  TGHTNAYFPVLIPASFLTKEAEHVEGFAPECAVVTEAGGEKLEEPLIVRPTSETVIGYMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              I+S+R+LP    Q     R E RPR        FL    + +               
Sbjct: 119 SKWIQSWRDLPLLINQWANVMRWEKRPRL-------FLRTSEFLWQ-------------- 157

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                                         E      T E  V  ++  ++        D
Sbjct: 158 ------------------------------EGHTAHATSEEAVQETERMLEVYRRIMTDD 187

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
               +           P A  +      + D          + ++ G   + G  +S   
Sbjct: 188 LALPVVEGVKSAGERFPGALETYTCETMVSD---------TKAVQAGTSHFLGQNFSKAF 238

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +  F+  D    Y    S+G+ + R++ AVI +  D  G+I P  VAP K  +I I   +
Sbjct: 239 NIQFQAQDETMQYAWTTSWGV-STRLIGAVIMTHSDADGLIIPPHVAPVKAVVIPISKDE 297

Query: 359 QVCRDAC---EKIYARLSKV-GCD-VFWDDMGE----QIGSQFAVADLLGFPLQVIVGSK 409
              ++      ++   L+KV G   V  D   E    +   +F      G PL++ +G K
Sbjct: 298 AKSKELAGKAAELAQSLNKVLGGRFVKVD---EQFYMRPSDRFFYHLQKGVPLRIELGEK 354

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +   V +  R TG + D +  E+           +  L
Sbjct: 355 DDAAGTVRLVRRDTGEKLDAAQGELTTVVPQLLEEIQHNL 394


>gi|322490370|emb|CBZ25630.1| putative prolyl-tRNA synthetase, putative,bifunctional
           aminoacyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 715

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 134/414 (32%), Gaps = 68/414 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + +  MI  +   G Y   P        V   +  +  R G  +   P   S   L  E 
Sbjct: 236 ITKAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIERLGVEDCYFPMFVSRSCLEREK 295

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I+S+R+LP          
Sbjct: 296 DHIEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVI 355

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       +R+REFL ++ +      E        +   Y  ++ +  L ++P+    
Sbjct: 356 RWEFSHPTPFIRTREFLWQEGHCAWAKAEECAKEVLDILECYASVYEQ--LLAVPV---- 409

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                       V     E + F                              T      
Sbjct: 410 ------------VRGRKTEKEKFAG------------------------GHYTTTVETFI 433

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             V       +     +   +  ++        ++  P +      + +       S+G+
Sbjct: 434 EAVGRGCQGATSHNLGQNFGKMFDI--------RFQDPEN------NEQTLIPWQNSWGL 479

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + RV+  +I    D +G++ P  VA  ++ +I +     + +D  E+    L       
Sbjct: 480 -STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVG----ITKDTTEEARQGLLCSCLRA 534

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             D       G +F   ++ G PL+V +G + +++  + +  R +G R  +  +
Sbjct: 535 KCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVLWD 588


>gi|218235284|ref|YP_002365239.1| prolyl-tRNA synthetase [Bacillus cereus B4264]
 gi|229148794|ref|ZP_04277043.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1550]
 gi|218163241|gb|ACK63233.1| proline--tRNA ligase [Bacillus cereus B4264]
 gi|228634682|gb|EEK91262.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1550]
          Length = 476

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSKAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 364 DTKEKEFVPMDQLEERIPALLEE 386


>gi|315639668|ref|ZP_07894808.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315484629|gb|EFU75085.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 478

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 148/448 (33%), Gaps = 82/448 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++++L  +Q+    AE+ S+  +           G   + P G +  +++     +   
Sbjct: 8   FTQWYLQTVQQ----AELMSYSPVR----------GSIIFRPDGFELWEHIQEEFNKFLK 53

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDI 117
             G      P L     +  E+   + +  E+  + +  D+     +   PT E ++   
Sbjct: 54  TQGIRNAYFPMLIPKSFFMKEADHIEGFAPELPWVTEVGDEKLEEPLALRPTSETMIGSA 113

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I SYR+LP+   Q    FR E +     +R+ EFL ++ ++     E ++     +
Sbjct: 114 FSDWIHSYRDLPYEINQWANVFRWEKK-TLPFLRTSEFLWQEGHTAHADEEDARRRTMSI 172

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y R+       +IP+       G     E    A   +T    +       + +  +
Sbjct: 173 LDEYARLCEE--FLAIPVYK-----GQKTPSERFAGAV--DTYSIEAMMKDGKAVQAGTS 223

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +       +    +          H                        +   T+    
Sbjct: 224 HYMGTKFAEAFDITYLTKENKHVAAHT---------------------TSWGVSTRLLGS 262

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-- 355
           +  T    +G                              +++P +VAP ++ L+ +   
Sbjct: 263 LIMTHGDENG------------------------------LVFPPTVAPTQVVLLPVGPW 292

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +  +KI+  L   G  V  DD     G +F   +L G  +++  G + + +  
Sbjct: 293 KKNPAILEKLDKIFQELKAKGIRVRLDDSENSPGYKFHEWELKGACIRIECGPRDLENGH 352

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V  K R    +  ++ +E++ Y   + +
Sbjct: 353 VMAKVRDVDGKVTVAFDELLAYIDEQLA 380


>gi|189465935|ref|ZP_03014720.1| hypothetical protein BACINT_02298 [Bacteroides intestinalis DSM
           17393]
 gi|189434199|gb|EDV03184.1| hypothetical protein BACINT_02298 [Bacteroides intestinalis DSM
           17393]
          Length = 497

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/434 (15%), Positives = 149/434 (34%), Gaps = 51/434 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +  Q + +G     P G    + +   + +    TG +    P L       
Sbjct: 20  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLS 79

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                                        E    + F                +    R 
Sbjct: 80  R----------------------------EAEHVEGFAKECA-----------VVTHHRL 100

Query: 142 ELRP-RFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P   GV+   E  +++      T E    ++Y     SY  +       +  MR E 
Sbjct: 101 KNAPDGSGVIVDPEAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVMRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF+      E     +             +     +   +         + 
Sbjct: 161 RTRLFLRTAEFLWQ----EGHTAHATREEAEEEAVRMLNVYAEFAEKYMAVPVVKGVKSA 216

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           ++     L     E      + ++ G   + G  ++      F   + K  YV   S+G+
Sbjct: 217 NERFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I  + ++ +   EK+    A+L  +G
Sbjct: 277 -STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLQKIDEKVAGIVAKLKSMG 335

Query: 377 CDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E  S + + 
Sbjct: 336 VSVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIE 395

Query: 436 NYASHRFSNNRPVL 449
            Y        +  +
Sbjct: 396 EYVKDLLEEIQANI 409


>gi|218960761|ref|YP_001740536.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729418|emb|CAO80329.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 508

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 136/431 (31%), Gaps = 87/431 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG      P       +  E+   + + KE   +
Sbjct: 39  GCMVIKPWGYAIWENIQRALDKMFRETGHRNAYFPIFIPKSFFEKEAEHIEGFAKECAIV 98

Query: 97  ADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                               +  I  PT E ++   F   + SYR+LP    Q     R 
Sbjct: 99  THSKLEADGKGGLQLAGELTEPYIVRPTSETIIGASFAKWVNSYRDLPLLINQWANIVRW 158

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+R R   +R+ EFL ++ ++   T + +K    KM    L ++       + +    G 
Sbjct: 159 EMRTRL-FLRTTEFLWQEGHTVHETEKEAKEETLKM----LNVYAIFARDYLALPVIQG- 212

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                        +  E++ F                                       
Sbjct: 213 -------------EKTESEKFPGAVTT--------------------------------- 226

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      E      + ++ G   + G  ++      F+   G+  Y    S+G+ +
Sbjct: 227 --------YCIEAMMQDRKALQSGTSHFLGQNFAKASEIKFQNRKGEIEYAWTTSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP  I++I I    Q  +      E +  +L  +  D
Sbjct: 278 TRLIGAIIMAHSDDNGLVLPPKIAPSHIAIIPIYRDAQEQKQVMAFAENVQNQLKDLYLD 337

Query: 379 -----VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSL 431
                   D        +       G PL++ +G + +    V +  R      ++ + +
Sbjct: 338 DVPLYTELDTRDMTSSERNWYWIKKGIPLRLEIGPRDIIHDAVMLARRDKEPQDKQSVKI 397

Query: 432 EEVINYASHRF 442
            ++ NY     
Sbjct: 398 SDLTNYVLQTL 408


>gi|313679172|ref|YP_004056911.1| prolyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
 gi|313151887|gb|ADR35738.1| prolyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
          Length = 478

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 147/449 (32%), Gaps = 79/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     +  + AE+  +  +  T ++           P G    +N+   +     
Sbjct: 10  QSQDFSEWYIDVIQKAELVDYGPVRGTMVMR----------PYGYALWENLQRELDRMIK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P       L  E+   + +  E+  +     +  ++ +   PT E V+  +
Sbjct: 60  ETGHENAYFPLFIPMSFLQKEAEHVEGFAPELAVVTHAGGEELEEPLAVRPTSETVIGYM 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I S+R+LP    Q     R E RPR   +R+ EFL ++ ++   T E ++    +M
Sbjct: 120 WSKWISSWRDLPVLMNQWANVVRWEKRPR-PFLRTTEFLWQEGHTAHATREEAEEETRRM 178

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y ++              +         E +      E + F    +    I +   
Sbjct: 179 LGVYAQL--------------ARDYAAIPVWEGM----KTEKEKFAGAVYT-TTIEAMMR 219

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + +  S         A      ++ L +                  +   T+    
Sbjct: 220 DGKALQAGTSHFLGQNFARAFEITFQDQDLEEKYVWT-----------TSWGLSTRMIGA 268

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +        G                              +I P  +AP ++ ++ I   
Sbjct: 269 IIMAHGDDQG------------------------------LILPPRLAPIQVVVVPIYRK 298

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           +  +V  +A  ++   +   G  V  DD  +   G +F   +L G PL++ +G + V   
Sbjct: 299 NTREVVLEAARELVREIRAAGVRVHLDDRDQYSPGYKFNEWELKGVPLRIEIGPRDVEAG 358

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +K RL G +E + L ++      R  
Sbjct: 359 HAVLKSRLGGEKEFIGLRDLPGLLPERLE 387


>gi|295109529|emb|CBL23482.1| prolyl-tRNA synthetase, family I [Ruminococcus obeum A2-162]
          Length = 477

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 1/167 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FG  ++      +   D    YV   S+G+   R++ A+I    D 
Sbjct: 220 MHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGMT-TRMIGAIIMVHGDN 278

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP +  +I I+   +   +  ++++A L   G  V  DD     G +FA  
Sbjct: 279 SGLVLPPRIAPTQAVIIPIQQRKEGVLEKADELFAALKAAGIRVKVDDTDRSPGFKFAEQ 338

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++ G P+++  G K + + +  I  R T  +  +S +E+ +      
Sbjct: 339 EMRGIPVRIECGPKDIENGQAVICRRDTREKYVVSFDELASKVQEVL 385



 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  +  P G    +N+   +      TG   + +P      L   E    + +  E+  
Sbjct: 36  KGCMAIKPAGYAIWENIQHELDSRFKETGVQNVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +         + +   PT E +  D ++  I+S+R+LP  + Q     R E +     +R
Sbjct: 96  VTHGGLNELQERLCVRPTSETLFCDFYQKDIQSHRDLPKVYNQWCSVVRWE-KTTRPFLR 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           SREFL ++ ++   T E ++    +M   Y      +
Sbjct: 155 SREFLWQEGHTAHATAEEAEERTIQMLNLYADFCEEV 191


>gi|295839715|ref|ZP_06826648.1| threonine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827624|gb|EDY46892.2| threonine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 425

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 128/430 (29%), Gaps = 49/430 (11%)

Query: 19  EIASHKLMLRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           E   H+L    G+         G+   LP G      +   +R  +   G   +  P L 
Sbjct: 27  EHDHHRLGRALGLYGTDPLLGAGLPYLLPDGASVRHALEEYVRALEVAGGYQHVHSPVLG 86

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +L+V SG +  Y  + L   +   +  +  P        I+R+  +SYR+LP    ++
Sbjct: 87  KQELYVRSGHWAHYRADTLPPMEVGGEHFVLRPGLCPHHALIYRARARSYRDLPLRVAEL 146

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E      G+ R R   + DA+ F   PE                +  LGL    
Sbjct: 147 GGMFRAEPSGTLGGLTRVRAIHLNDAHLFCA-PESLAAEVAGALALIRTAYRALGLAPSR 205

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R                    GE   +   +       +   +      L+   E+   
Sbjct: 206 YRLSL----------------PGEGAKYALAEGGWERAAAALAEALAASGLD--WEEERG 247

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQ 313
             A      + +  D+      +S    +      FG  Y           DG +   V 
Sbjct: 248 EAAFYGPKIDVQARDAAGREFTLSTVQADFHQPAAFGLDYRAA--------DGSRPRPVM 299

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  V A +   H G    W           + +    +   +A E    R  
Sbjct: 300 VHRSVLGSLERVLARLIEVHGGAFPAWLAP------VQVGVVPVGEEQEEAAESFVRRCR 353

Query: 374 KVGCDVFWDDMGE-----QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             G                + ++   A L   P   ++G++  +  +V ++ R       
Sbjct: 354 AAGLRA----RRYPAHAGTLAARVRRARL--VPHLAVLGAREAAAGEVALRRRDGERLPA 407

Query: 429 MSLEEVINYA 438
               E +   
Sbjct: 408 RPEAEAVALL 417


>gi|167762197|ref|ZP_02434324.1| hypothetical protein BACSTE_00549 [Bacteroides stercoris ATCC
           43183]
 gi|167699840|gb|EDS16419.1| hypothetical protein BACSTE_00549 [Bacteroides stercoris ATCC
           43183]
          Length = 497

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/434 (14%), Positives = 147/434 (33%), Gaps = 51/434 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +  Q + +G     P G    + +   + +    TG +    P L       
Sbjct: 20  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLS 79

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                                        E    + F                +   +R 
Sbjct: 80  R----------------------------EAEHVEGFAKECA-----------VVTHYRL 100

Query: 142 ELRPRFGVMRSREFLMKDAY-SFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P  G +        +       T E    ++Y     SY  +       +   R E 
Sbjct: 101 KNDPNGGGVVVDPTAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF  L   G T     ++  +  +   N   +      ++        A  
Sbjct: 161 RTRLFLRTAEF--LWQEGHTAHATREEAEEEAVRMLNVYSEFAEKYMAVPVVKGVKSANE 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                   +    E      + ++ G   + G  ++      F   + K  YV   S+G+
Sbjct: 219 RFAGALNTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G
Sbjct: 277 -STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKAMG 335

Query: 377 CDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  ++ G P+++++G + + ++ +E+  R T  +E  S + + 
Sbjct: 336 ISVKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIE 395

Query: 436 NYASHRFSNNRPVL 449
            Y        +  +
Sbjct: 396 EYVKDLLEEIQANI 409


>gi|229051703|ref|ZP_04195164.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH676]
 gi|228721660|gb|EEL73143.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH676]
          Length = 476

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 364 DTKEKEFVPMDQLEERIPALLEE 386


>gi|229108063|ref|ZP_04237688.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|229143182|ref|ZP_04271614.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|296501219|ref|YP_003662919.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|228640263|gb|EEK96661.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|228675338|gb|EEL30557.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|296322271|gb|ADH05199.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 476

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 364 DTKEKEFVPMDQLEERIPALLEE 386


>gi|302389804|ref|YP_003825625.1| prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200432|gb|ADL08002.1| prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 479

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 3/171 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G     G  +S     TF   DGK  YV   S+G+ + R++ A+I +  D
Sbjct: 219 MMGDGKALQAGTSHNLGQHFSKVFDITFLDQDGKLKYVWQTSWGV-STRLIGAIIMTHGD 277

Query: 335 GKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
            +G+  P  VAP ++ ++ I     +   +    +Y  L      V  DD  E   G +F
Sbjct: 278 DRGLKLPPRVAPIQVVIVPIFGQQKEEILEKSRSLYQTLKNNNFRVELDDRDEYTPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              ++ G P+++ +G K ++ ++V +  R TG +  +   ++I Y +    
Sbjct: 338 NEWEMKGVPVRLEIGPKDLAQNQVLLVRRDTGEKISVKEADLIPYLTDLLE 388



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 6/155 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+  ++      TG      P      L   E+   + +  E+  +
Sbjct: 37  GCMVIRPYGYAIWENMQKLLDRRFKETGHKNAYFPLFIPESLLKKEAEHVEGFAPEVAWV 96

Query: 97  ADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +     +   PT E ++  ++   IKS+R+LP    Q     R E       +R+
Sbjct: 97  THGGQEELAERIAVRPTSETIICSMYSKWIKSWRDLPVLINQWCSVVRWEKS-TKPFLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
            EFL ++ ++   T E ++    +M   Y      
Sbjct: 156 AEFLWQEGHTAHRTEEDAEEETLRMLEIYRDFVET 190


>gi|75761526|ref|ZP_00741486.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490981|gb|EAO54237.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 503

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 38  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 87

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 88  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 122 -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 163

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 164 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 216

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 217 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 272

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 273 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 331

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 332 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 390

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 391 DTKEKEFISMDQLEERIPALLEE 413


>gi|323345462|ref|ZP_08085685.1| proline--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323093576|gb|EFZ36154.1| proline--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 493

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 91/176 (51%), Gaps = 5/176 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     T+   + K  YV   S+G+ + R++ A+I +  D
Sbjct: 232 MMQDGKALQSGTSHFLGQNFAKSFDVTYLNKENKPEYVWATSWGV-STRLIGALIMTHSD 290

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI---YARLSKVGCDVFWDDM-GEQIGS 390
             G++ P  +AP ++ +I I    +  +    K+    A L ++G +V +DD   ++ G 
Sbjct: 291 DNGLVLPPRLAPIQVVIIPITKGIEQLQAISAKLSPIIASLRELGINVKYDDTDNKRPGF 350

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +FA  +L G P+++++G + + D+ +E+  R T  +E +SL+ +++Y  H   + +
Sbjct: 351 KFADYELKGVPVRLVMGGRDLEDNTIEVMRRDTLEKETVSLDGIVDYVKHLLDDMQ 406



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 24/197 (12%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +  Q + +G     P G    + +   + +    TGA
Sbjct: 5   LKELTKRADNYSQWYNDLVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGA 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    R D+ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKSSEDGRSVEVDPSARLDEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATR 183

Query: 168 EGSKHSYNKMFVSYLRI 184
           E ++    +M   Y   
Sbjct: 184 EEAEEEAQQMLRVYAEF 200


>gi|169621698|ref|XP_001804259.1| hypothetical protein SNOG_14060 [Phaeosphaeria nodorum SN15]
 gi|160704311|gb|EAT78685.2| hypothetical protein SNOG_14060 [Phaeosphaeria nodorum SN15]
          Length = 568

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 143/448 (31%), Gaps = 77/448 (17%)

Query: 23  HKLMLRTGMI-------HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            +++ +  MI            G Y   P      +++ A    +           P   
Sbjct: 63  QQVITKGQMISYYDTFGRILMTGSYILEPSSYAIWESIKAWFDNQIKTLKVRNAYFPIFI 122

Query: 76  SAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           SAD L  E    + +  E+  +        +K +   PT E  M   F   I+S+R+LP 
Sbjct: 123 SADNLEREKEHVEGFAAEVAWVTKGGKSDLEKPVAVRPTSETAMYPYFARKIQSHRDLPL 182

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
              Q     R E +     +RSREFL ++ ++  LT + +     ++   Y  ++  L L
Sbjct: 183 KLNQWNNVVRWEFKHPMPFIRSREFLWQEGHTAHLTKKEASDEVLQILDWYSDVYQDL-L 241

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++      G    +E    AD   T        ++  IP+         S      
Sbjct: 242 AVPVVK------GTKTVNEKFPGADYTTT--------IEGFIPATGRGIQAATSHCLGQH 287

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                     D + ++   S               H++                      
Sbjct: 288 FSKMFNITVEDPNAKEAGKSEHV------------HVWQ--------------------- 314

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
                S+G+   R +  +I +  D +G++ P  VA  ++ +I +           +    
Sbjct: 315 ----NSWGLT-TRSIGVMILTHGDNRGLVIPPRVAEIQVVVIPVGVSAKMSAEDKESLYS 369

Query: 364 ACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +KI   L + G  V  D   G   G +F   +L G PL++  G K      V    R 
Sbjct: 370 KVKKISEDLVEAGVRVETDYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRD 429

Query: 423 TGIR----EDMSLEEVINYASHRFSNNR 446
              +      ++++++           +
Sbjct: 430 ISDKDAARGTINVDDLTKEVPKLLEKIQ 457


>gi|261349933|ref|ZP_05975350.1| threonine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|288860716|gb|EFC93014.1| threonine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 608

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 145/437 (33%), Gaps = 50/437 (11%)

Query: 16  RDAEIASH-KLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            DA    H KLM    +    S    G   W P G+   D +   +       GA+ +  
Sbjct: 189 SDAGEPPHVKLMREKELCDYESASDVGNLKWFPKGRLVRDLLADYVYNLVVDQGAMPIET 248

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P     D    +     +G+   R   + +  ++           +      +++NLP  
Sbjct: 249 PIFYDLDNEAINVHAAKFGERQYRTDTKKN--LMLRFACCFGAFRVMADPFITWKNLPAK 306

Query: 132 FYQIQL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            Y++    FR E +    G+ R R F M D +SF      +   ++K             
Sbjct: 307 LYELSTYSFRFEKKGEVVGLKRLRAFTMPDFHSFCADMNSTLEEFSKQTD---------- 356

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                M  ++G           V  D     +F +                  I    ++
Sbjct: 357 -----MCIQTG-----------VDLDVNYEIIFRATKDFYDENKEWMYSIGKKIGKPVLL 400

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E         S   +    D L          I+V                T+ G DGK+
Sbjct: 401 EILPERKHYWSCKIDFAAIDYLGRPIENPTVQIDVES--------GKRFDITYLGEDGKE 452

Query: 310 HYVQM--GSYGIGAMRVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           HY  +   S      RV+ +++E +    D K  + P  ++P ++ +I +    +  +D 
Sbjct: 453 HYPTILHCSPTGSIERVICSLLEKTAIELDEKAPMLPTWLSPIEVRIITVG---EDHKDF 509

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++Y +++     V  DD  E +G +   A     P   +VG          +  R TG
Sbjct: 510 ANELYDKINAENIRVDVDDRDESVGKKIRNAATEWIPYIFVVGDNEKESGVFSVTVRETG 569

Query: 425 IREDMSLEEVINYASHR 441
            + DM+++E+I     +
Sbjct: 570 EKVDMTVDELIKEVLDK 586


>gi|222445506|ref|ZP_03608021.1| hypothetical protein METSMIALI_01146 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435071|gb|EEE42236.1| hypothetical protein METSMIALI_01146 [Methanobrevibacter smithii
           DSM 2375]
          Length = 608

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 145/437 (33%), Gaps = 50/437 (11%)

Query: 16  RDAEIASH-KLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            DA    H KLM    +    S    G   W P G+   D +   +       GA+ +  
Sbjct: 189 SDAGEPPHVKLMREKELCDYESASDVGNLKWFPKGRLVRDLLADYVYNLVVDQGAMPIET 248

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P     D    +     +G+   R   + +  ++           +      +++NLP  
Sbjct: 249 PIFYDLDNEAINVHAAKFGERQYRTDTKKN--LMLRFACCFGAFRVMADPFITWKNLPAK 306

Query: 132 FYQIQL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            Y++    FR E +    G+ R R F M D +SF      +   ++K             
Sbjct: 307 LYELSTYSFRFEKKGEVVGLKRLRAFTMPDFHSFCADMNSTLEEFSKQTD---------- 356

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                M  ++G           V  D     +F +                  I    ++
Sbjct: 357 -----MCIQTG-----------VDLDVNYEIIFRATKDFYDENKEWMYSIGKKIGKPVLL 400

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E         S   +    D L          I+V                T+ G DGK+
Sbjct: 401 EILPERKHYWSCKIDFAAIDYLGRPIENPTVQIDVES--------GKRFDITYLGEDGKE 452

Query: 310 HYVQM--GSYGIGAMRVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           HY  +   S      RV+ +++E +    D K  + P  ++P ++ +I +    +  +D 
Sbjct: 453 HYPTILHCSPTGSIERVICSLLEKTAIELDEKAPMLPTWLSPIEVRIITVG---EDHKDF 509

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++Y +++     V  DD  E +G +   A     P   +VG          +  R TG
Sbjct: 510 ANELYDKINAENIRVDVDDRDESVGKKIRNAATEWIPYIFVVGDNEKESGVFSVTVRETG 569

Query: 425 IREDMSLEEVINYASHR 441
            + DM+++E+I     +
Sbjct: 570 EKVDMTVDELIKEVLDK 586


>gi|237842879|ref|XP_002370737.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968401|gb|EEB03597.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|221485712|gb|EEE23993.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
 gi|221502920|gb|EEE28630.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 711

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 140/456 (30%), Gaps = 70/456 (15%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQN 62
           S       +++   +E  +   ++R+ MI  +   G Y   P      + V     +E  
Sbjct: 210 SSMLGVTAKKDENFSEWYTQA-IVRSEMIEYYDISGCYIMRPWAFHIWEKVQRFFDDEIK 268

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDI 117
           + G      P   S   L  E    + +  E+  +    D    + +   PT E +M   
Sbjct: 269 KMGVENSYFPMFVSRHKLEKEKDHVEGFSPEVAWVTHYGDSPLPEKIAIRPTSETIMYPA 328

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+S+R+LP    Q     R E +     +R+REFL ++ ++   T E +      +
Sbjct: 329 YAKWIRSHRDLPLKLNQWCSVVRWEFKQPTPFLRTREFLWQEGHTAHATEEEAWELVLDI 388

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y R +      ++P+      I G+ S         GE      K         EN 
Sbjct: 389 LELYRRWYEEC--LAVPV------IKGEKSE--------GEKFAGGKKTTTVEAFIPENG 432

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                 + + +   +   +    +            +   + R + V             
Sbjct: 433 RGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGCTTRSLGV------------- 479

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M  T     G     ++ S  +                                I I   
Sbjct: 480 MIMTHGDDKGLVIPPRVASVQVVI------------------------------IPILFK 509

Query: 358 DQVCRDA---CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           D+   +    C ++   L K    V  DD      G ++   ++ G PL++ +G K ++ 
Sbjct: 510 DENTGEILGKCRELKTMLEKADIRVRIDDRSNYTPGWKYNHWEVKGVPLRLELGPKDLAK 569

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
               +  R TG    +S  ++           +  L
Sbjct: 570 GTARVVRRDTGEAYQISWADLAPKLLELMEGIQRSL 605


>gi|148643274|ref|YP_001273787.1| threonyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|166225460|sp|A5UMJ1|SYT_METS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148552291|gb|ABQ87419.1| threonyl-tRNA synthetase, ThrS [Methanobrevibacter smithii ATCC
           35061]
          Length = 608

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 145/437 (33%), Gaps = 50/437 (11%)

Query: 16  RDAEIASH-KLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            DA    H KLM    +    S    G   W P G+   D +   +       GA+ +  
Sbjct: 189 SDAGEPPHVKLMREKELCDYESASDVGNLKWFPKGRLVRDLLADYVYNLVVDQGAMPIET 248

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P     D    +     +G+   R   + +  ++           +      +++NLP  
Sbjct: 249 PIFYDLDNEAINVHAAKFGERQYRTDTKKN--LMLRFACCFGAFRVMADPFITWKNLPAK 306

Query: 132 FYQIQL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            Y++    FR E +    G+ R R F M D +SF      +   ++K             
Sbjct: 307 LYELSTYSFRFEKKGEVVGLKRLRAFTMPDFHSFCADMNSTLEEFSKQTD---------- 356

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                M  ++G           V  D     +F +                  I    ++
Sbjct: 357 -----MCIQTG-----------VDLDVNYEIIFRATKDFYDENKDWMYSIGKKIGKPVLL 400

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E         S   +    D L          I+V                T+ G DGK+
Sbjct: 401 EILPERKHYWSCKIDFAAIDYLGRPIENPTVQIDVES--------GKRFDITYLGEDGKE 452

Query: 310 HYVQM--GSYGIGAMRVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           HY  +   S      RV+ +++E +    D K  + P  ++P ++ +I +    +  +D 
Sbjct: 453 HYPTILHCSPTGSIERVICSLLEKTAIELDEKAPMLPTWLSPIEVRIITVG---EDHKDF 509

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++Y +++     V  DD  E +G +   A     P   +VG          +  R TG
Sbjct: 510 ANELYDKINAENIRVDVDDRDESVGKKIRNAATEWIPYIFVVGDNEKESGVFSVTVRETG 569

Query: 425 IREDMSLEEVINYASHR 441
            + DM+++E+I     +
Sbjct: 570 EKVDMTVDELIKEILDK 586


>gi|240047193|ref|YP_002960581.1| prolyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239984765|emb|CAT04739.1| Prolyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 480

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 151/451 (33%), Gaps = 77/451 (17%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           + F     +    AE+ S+  +          KG     P G     ++  ++       
Sbjct: 12  QDFAKWYVDVITQAELMSYGPV----------KGTMYLKPNGYAIWSSIQDVLNFIFQEL 61

Query: 65  GAIEMSVPTLQSADL-WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFR 119
               +  P+L        E      +  E+L +    +K     +   PT E +  D F+
Sbjct: 62  SIKNVYFPSLIPQSFIEKEKQHVKGFAPELLTITHVGEKKLPENIYLRPTSEVLFADFFK 121

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I     LP    Q     R E +     +R+ EFL ++ ++       +K     M  
Sbjct: 122 KEIAHKNKLPILLNQWCQVTRWE-KTTNPFLRTTEFLWQEGHTVHEDSSKAKKFAKIMIE 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y  I  +    +IP+      +G     E    A T  T     KD       + +   
Sbjct: 181 NYKFIVEK--FLAIPVI-----VGKKTQKERFAGAKTTYTIEAMMKDGRALQAGTSHY-- 231

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                                       +G  F      S    
Sbjct: 232 --------------------------------------------LGQNF------SKNFD 241

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            TFK  D +  YV   S+G+ + R++ A+I +  D +GII P ++A +K+ ++    +  
Sbjct: 242 ITFKNKDNQLEYVYQTSWGV-STRLIGALIMTHGDDRGIIIPPAIAEYKVDILAFFVNKH 300

Query: 360 VCRDAC-EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   K+   L         D    Q+G + A +++LG P+++ +G + +   +V +
Sbjct: 301 PNLKKAILKLSDELDDFHITNRVDLSDNQVGFKIANSEVLGTPVRIEIGPRDLEAKQVVV 360

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             R T  ++ +   +++N+    F   +  L
Sbjct: 361 VRRDTLEKKIVPTSQIVNHLEQLFQEIQANL 391


>gi|229003388|ref|ZP_04161210.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
 gi|228757863|gb|EEM07086.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
          Length = 257

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D 
Sbjct: 1   MHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDN 59

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F   
Sbjct: 60  NGLVMPPKVAPVQVVIVPIAQHKEGVLEKATQLQGRIQKV-ARVKIDASNKTPGWKFNEY 118

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K +  ++V +  R T  +E +S++++    +     
Sbjct: 119 EMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQLEERITSLLDE 167


>gi|124805808|ref|XP_001350543.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium
           falciparum 3D7]
 gi|74862875|sp|Q8I5R7|SYP_PLAF7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23496667|gb|AAN36223.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium
           falciparum 3D7]
          Length = 746

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 138/422 (32%), Gaps = 69/422 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++++ +I  +   G Y   P      + V A   +E  +        P  +    L  
Sbjct: 268 QVIVKSELIEYYDISGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVTKNKLEK 327

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D    + +   PT E +M  +F   I+SYR+LP    Q   
Sbjct: 328 EKNHIEGFSPEVAWVTKYGDSNLPEEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQWNT 387

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++     E +      +   Y R +            
Sbjct: 388 VVRWEFKQPTPFIRTREFLWQEGHTAHKNEEEAVKLVFDILDLYRRWYEE--------YL 439

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S         GE     +         SEN       + + +   +   + 
Sbjct: 440 AVPIIKGIKSE--------GEKFGGANFTSTAEAFISENGRAIQAATSHYLGTNFAKMFK 491

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              +  NE        +   + R I +                           + M   
Sbjct: 492 IEFEDENEVKQYVHQTSWGCTTRSIGI---------------------------MIMTH- 523

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSK 374
                           D KG++ P +V+ +K+ ++ I      +      C+ I   L  
Sbjct: 524 ---------------GDDKGLVLPPNVSKYKVVIVPIFYKTTDENAIHSYCKDIEKILKN 568

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
              +  +DD      G +F   +L G P+++ VG K + ++   I  R    + ++  E 
Sbjct: 569 AQINCVYDDRASYSPGYKFNHWELRGIPIRIEVGPKDLQNNSCVIVRRDNNEKCNVKKES 628

Query: 434 VI 435
           V+
Sbjct: 629 VL 630


>gi|153812523|ref|ZP_01965191.1| hypothetical protein RUMOBE_02922 [Ruminococcus obeum ATCC 29174]
 gi|149831448|gb|EDM86536.1| hypothetical protein RUMOBE_02922 [Ruminococcus obeum ATCC 29174]
          Length = 477

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 1/167 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FG  ++      +   D    YV   S+G+   R++ A+I    D 
Sbjct: 220 MHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGMT-TRMIGAIIMVHGDN 278

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP +  +I I+   +   +  ++++A L   G  V  DD     G +FA  
Sbjct: 279 SGLVLPPRIAPTQAVIIPIQQRKEGVLEKADELFAALKAAGIRVKVDDTDRSPGFKFAEQ 338

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++ G P+++  G K + + +  I  R T  +  +S EE+        
Sbjct: 339 EMRGIPVRIECGPKDIENGQAVICRRDTREKYVVSFEELAAKVQEVL 385



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  +  P G    +N+   +      TG   + +P      L   E    + +  E+  
Sbjct: 36  KGCMAIKPAGYAIWENIQHELDRRFKETGVQNVYMPMFIPESLLQKEKDHVEGFAPEVAW 95

Query: 96  LAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +         + +   PT E +  D ++  I+S+R+LP  + Q     R E +     +R
Sbjct: 96  VTHGGLNELQERLCVRPTSETLFCDFYQKDIQSHRDLPKVYNQWCSVVRWE-KTTRPFLR 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           SREFL ++ ++   T E ++    +M   Y      +
Sbjct: 155 SREFLWQEGHTAHATAEEAEERTIQMLNLYADFCEEV 191


>gi|302672266|ref|YP_003832226.1| prolyl-tRNA synthetase ProS [Butyrivibrio proteoclasticus B316]
 gi|302396739|gb|ADL35644.1| prolyl-tRNA synthetase ProS [Butyrivibrio proteoclasticus B316]
          Length = 477

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 128/411 (31%), Gaps = 60/411 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    + +   +      TG     +P      L   E    + +  E+  
Sbjct: 38  KGCMVIKPAGYAIWELIQKHLDARFKETGVQNAYLPMFIPESLLQKEKDHVEGFAPEVAW 97

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +           P  E                            R  +RP      + E 
Sbjct: 98  VTH-----GGLEPLTE----------------------------RYCVRP------TSET 118

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L  D              Y     SY  +   L      +R E        S EF  L  
Sbjct: 119 LFCDY-------------YKGEIHSYKDLPQVLNQWCSVVRWEKETRPFLRSREF--LWQ 163

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G T     ++  +      N   D + +  +I                E  +    E  
Sbjct: 164 EGHTAHATFEEAEERTQQMLNVYADFLENDMAIPVIKGQKTEKEKFAGAEATY--TVEAL 221

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++      FG  ++      + G D + HYV   S+G+   R + A+I    D 
Sbjct: 222 MHDGRALQSATSHNFGDGFAKAFGIQYAGKDNQLHYVNQTSWGLT-TRTIGAMIMVHGDN 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP ++ +I I+   +   +A  KI   L   G  V  D      G +FA  
Sbjct: 281 SGLVVPPKIAPIQVVVIPIQQKKEGVLEAANKIAESL--AGFRVKVDSTDRTPGFKFAEQ 338

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G P++V +G K +   K  +  R T  + + +++EV    +      +
Sbjct: 339 EMRGIPVRVEIGPKDLEAGKCVLCRRDTREKIECAIDEVPAKMAELLDQIQ 389


>gi|153953239|ref|YP_001394004.1| prolyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|146346120|gb|EDK32656.1| ProS [Clostridium kluyveri DSM 555]
          Length = 476

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   YFG  ++ P    +   +GK  YV   S+GI   R++ A+I    D 
Sbjct: 220 MHDGKALQSGTSHYFGQNFAKPFEMQYLDKNGKLQYVYQTSWGIT-TRIIGALIMVHGDD 278

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP ++ ++ I  H +   +  +++   LSK+   V  DD  +  G +F+  
Sbjct: 279 NGLVVPPRIAPLQVIIVPIAQHKEGVLEKADELKEELSKI-VRVKIDDSDKMPGWKFSEH 337

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K ++ ++V +  R T  +  + +  + +       N
Sbjct: 338 EMKGVPIRLEVGPKDIAKNQVVLVRRDTREKIMVPMSNLCDEVPALLDN 386


>gi|145544571|ref|XP_001457970.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425789|emb|CAK90573.1| unnamed protein product [Paramecium tetraurelia]
          Length = 702

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 142/432 (32%), Gaps = 70/432 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  MI  +   G Y   P      + +     +            P   SA  L 
Sbjct: 221 QQVIRKAEMIEYYDVSGCYILRPWSYFIWEQIQRYFDDLIRTEDVENTYFPMFLSAQQLN 280

Query: 81  VESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    +    + +   PT E +M   F   ++S+R+LP    Q  
Sbjct: 281 KEKEHVEGFKAEVAWVTKYGESDLNEHLAIRPTSETIMYPAFAKWVQSHRDLPLKVNQWT 340

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++   T E +      +   Y +++    L ++P+ 
Sbjct: 341 NIVRWEFKYPTPFIRTREFLWQEGHTAHFTKEEAVKQVYTILNFYEQVYGE--LLAVPVI 398

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G     E     D   T        ++  IP          S +          
Sbjct: 399 K-----GIKTESEKFAGGDFTTT--------VETIIPQNGRGLQGATSHHLGQNFSKMFE 445

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               D   +K F                                             + +
Sbjct: 446 IKFEDDKRQKAFAWQTSWG--------------------------------------LTT 467

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLS 373
             IGAM +         D KG++ P  VA ++I +I I   D   +   + CE+I   L 
Sbjct: 468 RSIGAMIMFHG------DDKGLVLPPRVAKYQIVIIPIINKDLDEKQLNEKCEEIKQILI 521

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K    V +D+      G +F   +  G P+++ +G     +++V +  R    +  + +E
Sbjct: 522 KQRLRVHFDNRDNYSPGWKFNKWEQKGVPIRLEIGPGEFKNNEVRVVQRFDNKKYQIKIE 581

Query: 433 EVINYASHRFSN 444
           ++ N  +    N
Sbjct: 582 DL-NQLNQILDN 592


>gi|85374048|ref|YP_458110.1| prolyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|123099532|sp|Q2NAH8|SYP_ERYLH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84787131|gb|ABC63313.1| putative prolyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 514

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 141/415 (33%), Gaps = 93/415 (22%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG   +  P     ++   E+   + + KEM  +
Sbjct: 37  GCMVIKPWGYGIWERIQRLLDDRIKATGHENVYFPIFIPLSNFEREAEHVEGFAKEMAVV 96

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E +  D     I+S+R+LP    Q     
Sbjct: 97  THHRLIGDGEGGLIPDPEAKLEEPLVVRPTSETIFGDAMARWIQSWRDLPLLTNQWANVV 156

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R   +R+ EFL ++ +    T   +     +  ++ L                 
Sbjct: 157 RWEMRTRM-FLRTSEFLWQEGH----TAHATAEEAKEHTLTML----------------- 194

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                               +V+ +    D  +P    +  +       VE W+      
Sbjct: 195 --------------------EVYRAHAEEDLALPVIAGEKPENERFPGAVETWSIE---- 230

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G   Y GT +S   +  F+  +G + Y    S+G+
Sbjct: 231 --------------AMMQDGKALQAGTSHYLGTNFSEAANIKFQDREGGEKYCHTTSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARL---S 373
            + R++  VI +  D  G+  P  +AP+++ ++ +   K  D      CE +  +L   S
Sbjct: 277 -STRMIGGVIMTHGDDDGLKVPPRIAPYQVVILPMLRDKPEDDALLAYCEDLRGKLITES 335

Query: 374 KVG--CDVFWDDMGEQIGS---QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            +G    V  D   ++ G    +       G P+ + VG + + +  V +  R  
Sbjct: 336 AMGEPVRVLLD---KKPGKAAAKRWNWVRKGAPIVIEVGGRDMENGVVSLLRRDE 387


>gi|229176981|ref|ZP_04304376.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 172560W]
 gi|229188661|ref|ZP_04315700.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
 gi|228594850|gb|EEK52630.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
 gi|228606456|gb|EEK63882.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 172560W]
          Length = 476

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 364 DTKEKEFVPMDQLEERIPALLEE 386


>gi|329765249|ref|ZP_08256829.1| threonyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138155|gb|EGG42411.1| threonyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 624

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 143/442 (32%), Gaps = 66/442 (14%)

Query: 25  LMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           LM + G+         G   + P G+     +   + +     G  E+  P +       
Sbjct: 209 LMKKMGIADYEPASDSGNMRFFPNGRLIKSLIERYVTDRVKEYGGYEVETPIM------- 261

Query: 82  ESGRYDSYGKEM------LRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
               YDS+   M              D   K +            +   +  SY+NLP+ 
Sbjct: 262 ----YDSHHPSMVSYFNRFPARQYNIDSEGKKLFLRFAACFGQFLMANEYQLSYKNLPYK 317

Query: 132 FYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            Y++    FR E      G+ R R F M D ++F    E S       F     +   LG
Sbjct: 318 LYELTRYSFRREQSGELVGLRRLRAFTMPDCHAFCKDIEQSIKEIKVRFDLSRNVLKELG 377

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +           +    + +F                       S   +         +V
Sbjct: 378 IVD-----SDYEMAIRFTEDFY------------------NENKSSIEELVKKHGRPVLV 414

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-K 308
           E W   +            DS+ +   +S   I+V +    G +Y       F      +
Sbjct: 415 EMWKEKFFYFVLKWEFNFVDSMGKASALSTDQIDVEN----GNRY----GIEFVDEHNVR 466

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD-----GKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            H + + +   GA+  +  V+          G+   +P  +AP ++ +I +K   +    
Sbjct: 467 KHPIILHNSPSGAIERIVYVLLEKAAQDIKEGRKPQFPLWLAPTQVRVIPLK---EEFSS 523

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C+ +  +LS     V  DD  E IG +   A+       +++G K  +   + I+ R T
Sbjct: 524 ICDTLVDKLSSFNIRVDIDDRNESIGKRIRDAEKDWIRYTLVIGEKEANSENLSIRDRQT 583

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G   +++ +  IN  + +    
Sbjct: 584 GNVRELTFDNFINEINEQTKEK 605


>gi|228956855|ref|ZP_04118640.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802896|gb|EEM49729.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 502

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+   + Y   M        K       H E         
Sbjct: 87  -------------------KETDHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 121 -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 162

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 163 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 215

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 216 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 271

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 272 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 330

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 331 LAKATELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 389

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 390 DTKEKEFVPMDQLEERIPALLEE 412


>gi|85708652|ref|ZP_01039718.1| prolyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85690186|gb|EAQ30189.1| prolyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 514

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 136/411 (33%), Gaps = 87/411 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    + V  ++ +     G      P     A+   E+   D + KEM  +
Sbjct: 37  GCMVIKPWGYGIWERVQRLMDDRIKAAGIANAYFPLFIPLANFEREADHVDGFAKEMAVV 96

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E ++ D     I+S+R+LP    Q     
Sbjct: 97  THHRLIADGKGGLIPDPEAKLEEPLVVRPTSETIIGDAMARWIQSWRDLPLMLNQWANVV 156

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R   +R+ EFL ++ ++   T E    +  +   + L ++     + + M   +
Sbjct: 157 RWEMRTRM-FLRTSEFLWQEGHTAHATRE---EAVEETHRA-LEMYRACVEEDLAMPVIA 211

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G              +  E + F   D                                 
Sbjct: 212 G--------------EKPENERFPGADETWSIEA-------------------------- 231

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G   Y GT ++      ++  +G        S+G 
Sbjct: 232 ---------------MMQDGKALQAGTSHYLGTSFASAAGIQYQDKEGTQQLCHTTSWG- 275

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG 376
            + R++  V+ +  D  G+  P  +AP +I ++ +   K  D+V    CE++ A L+   
Sbjct: 276 TSTRMIGGVVMTHGDDDGLRVPPRIAPHQIIILPMLREKPEDEVVLAYCEEVRAALASQW 335

Query: 377 -----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                  V  D    +  ++       G P+ V VG + + + KV +  R 
Sbjct: 336 SMGEPVRVLLDKTPGKAAAKRWSWVRKGAPVIVEVGPRDMDEGKVAVLRRD 386


>gi|219853874|ref|YP_002470996.1| hypothetical protein CKR_0531 [Clostridium kluyveri NBRC 12016]
 gi|219567598|dbj|BAH05582.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 481

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   YFG  ++ P    +   +GK  YV   S+GI   R++ A+I    D 
Sbjct: 225 MHDGKALQSGTSHYFGQNFAKPFEMQYLDKNGKLQYVYQTSWGIT-TRIIGALIMVHGDD 283

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP ++ ++ I  H +   +  +++   LSK+   V  DD  +  G +F+  
Sbjct: 284 NGLVVPPRIAPLQVIIVPIAQHKEGVLEKADELKEELSKI-VRVKIDDSDKMPGWKFSEH 342

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K ++ ++V +  R T  +  + +  + +       N
Sbjct: 343 EMKGVPIRLEVGPKDIAKNQVVLVRRDTREKIMVPMSNLCDEVPALLDN 391


>gi|325297765|ref|YP_004257682.1| Prolyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324317318|gb|ADY35209.1| Prolyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 496

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/446 (14%), Positives = 146/446 (32%), Gaps = 52/446 (11%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + +E  S     L+++  +  Q   +G     P G    + +   +      TG 
Sbjct: 5   LKELTKRSENYSQWYNDLVVKADLAEQSPVRGCMVIKPYGYAIWEKMQHQLDTMFKETGH 64

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +    P L                                    E    + F        
Sbjct: 65  VNAYFPLLIPKSYLSR----------------------------EAEHVEGFAKECAVVT 96

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIF 185
           +      +             GV+      +++      T E     +Y     SY  + 
Sbjct: 97  HYRLKNAEDGS----------GVIVDPAAKLEEELIIRPTSETIIWSTYKNWINSYRDLP 146

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                 +  +R E        + EF+      E     +          +        + 
Sbjct: 147 ILCNQWANVVRWEMRTRLFLRTAEFLWQ----EGHTAHATREEAEAEAQKMLHVYGDFAE 202

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +         + ++     L     E      + ++ G   + G  ++   +  F   
Sbjct: 203 KYMAVPVIKGVKSANERFAGALDTYTIEGLMQDGKALQCGTSHFLGQNFAKAFNVQFVDK 262

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--- 362
           + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +   
Sbjct: 263 NNKLDYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKLID 321

Query: 363 DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              E I  +L  +G  V +D+   ++ G +FA  +L G P+++ +G + + ++ +E+  R
Sbjct: 322 AKVEGIVNKLRAMGVTVKYDNADNKRPGFKFADYELKGVPVRLAMGGRDLENNTIELMRR 381

Query: 422 LTGIREDMSLEEVINYASHRFSNNRP 447
            T  +E  S + +  Y  +     + 
Sbjct: 382 DTLEKETRSCDGIEEYVKNLLEEIQA 407


>gi|90410628|ref|ZP_01218644.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90328869|gb|EAS45153.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 426

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 6/200 (3%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD       L L    + Q + G+  W   G      +   IRE+
Sbjct: 227 KLLKAHLTRLEEASKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG +D Y + M   +  N +     P +      IF  
Sbjct: 285 LTEYEYQEVKGPLMMDRVLWERSGHWDKYAEAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 344 GLKSYRDLPLRMAEFGACHRNEPSGALHGIMRVRGFTQDDAHVF-CTENQVQQEVTSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAES 199
                +   G  +I +   S
Sbjct: 403 MVYDTYQTFGFDNIVLSFYS 422


>gi|228937684|ref|ZP_04100320.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228970572|ref|ZP_04131222.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977142|ref|ZP_04137543.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228782590|gb|EEM30767.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228789159|gb|EEM37088.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821971|gb|EEM67963.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326938179|gb|AEA14075.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 476

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 364 DTKEKEFVPMDQLEERIPALLEE 386


>gi|86132750|ref|ZP_01051342.1| Prolyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85816704|gb|EAQ37890.1| Prolyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 492

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 149/452 (32%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G     P G    + + A +      TG      P      L+ 
Sbjct: 17  NELVVQADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETGHENAYFPLFVPKSLFE 76

Query: 82  -ESGRYDSYGKEMLRLAD-------------------RNDKAMIYGPTHEEVMTDIFRSH 121
            E    + + KE   +                     + ++ +I  PT E ++ + ++  
Sbjct: 77  AEEKNAEGFAKECAVVTHYRLKTDPEDSSKLIVDPNAKLEEELIVRPTSEAIIWNTYKGW 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E +      M   Y
Sbjct: 137 IQSYRDLPLLINQWANVVRWEMRTRL-FLRTAEFLWQEGHTAHATKEEALEEAELMNNVY 195

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                     ++P+       G     E    AD  ET    +       + +  + F  
Sbjct: 196 AEFAE--NFLAVPVIK-----GVKTESERFAGAD--ETYCIEALMQDGKALQAGTSHFLG 246

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +   ++T+       V                         +   T+    +  T
Sbjct: 247 QNFAKAFDVKFTSNQGKQEHVW---------------------ATSWGVSTRLMGALIMT 285

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-- 359
                G                              ++ P ++APF++ ++ I  + +  
Sbjct: 286 HSDDQG------------------------------LVLPPNLAPFQVVIVPIYKNQEQL 315

Query: 360 -VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   ++   L   G  V +D+    + G +F   +L G PL++ +G K +    VE
Sbjct: 316 DAISQVANELVQDLKLHGVSVKFDNRDTHKPGWKFNEYELKGVPLRIGIGPKDLEKRTVE 375

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  R T  +E ++ E V++         +  L
Sbjct: 376 LARRDTLTKEFVAKETVVDTVITLLKEIQENL 407


>gi|218895513|ref|YP_002443924.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228899114|ref|ZP_04063386.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
 gi|218542506|gb|ACK94900.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228860555|gb|EEN04943.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
          Length = 476

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|225166272|ref|ZP_03727969.1| prolyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224799485|gb|EEG18017.1| prolyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 296

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 2/225 (0%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-- 279
             +   +            D   L  +            D    +  +  P + +     
Sbjct: 57  IFADHAIRLIGNGTTGANKDGFHLRHVNVTRDLAITRFGDFRTVRPGEPCPVSGQPLQVR 116

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIEVGHIF  GTKYS   +A +     + H + MG YGIG  R + A+IE  HD  GII
Sbjct: 117 RGIEVGHIFKLGTKYSEKFNALYTDDQKQQHPMVMGCYGIGISRTLQAIIEQCHDADGII 176

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP + APF++ +  +   D       EK+ A   + G DV  DD  E+ G +F  ADL+G
Sbjct: 177 WPWACAPFQVLVTVLDPQDATVAALAEKLAAAAERAGADVLLDDRTERPGVKFKDADLIG 236

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            PL++ VG K + D  +E+K R       + + E   + +     
Sbjct: 237 IPLRITVGGKGIKDGIIELKWRTKKEVSRIPVGEAETHLAEAVRQ 281


>gi|229171240|ref|ZP_04298831.1| Prolyl-tRNA synthetase 2 [Bacillus cereus MM3]
 gi|228612233|gb|EEK69464.1| Prolyl-tRNA synthetase 2 [Bacillus cereus MM3]
          Length = 476

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLHILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQEHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEKRIPALLEE 386


>gi|70607289|ref|YP_256159.1| prolyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|114152265|sp|Q4J8L4|SYP_SULAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68567937|gb|AAY80866.1| bifunctional aminoacyl-tRNA synthetase [Sulfolobus acidocaldarius
           DSM 639]
          Length = 483

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 147/444 (33%), Gaps = 78/444 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R+AEI  +             KG+  WLP G K       +IR+  +  G  E+  P L 
Sbjct: 21  REAEIYDYG--------RYPVKGMGVWLPYGFKIRQAAVDLIRKLLDAKGHEEVLFPLLV 72

Query: 76  SADLWVESG-RYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
             DL    G     +  E+  +    ++     +   PT E  +T +    ++S      
Sbjct: 73  PEDLLRREGEHIKGFESEVFWVTKGGEENLDIRLALRPTSETAITYMETYWVQS------ 126

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                                                      Y ++   Y +I      
Sbjct: 127 -------------------------------------------YKQLPKKYYQIVSVFRY 143

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           ++   R            E   L +T E     ++  +   I      F+++     + +
Sbjct: 144 ETKATRPMIRLREVSTFKEAHTLHETYED----AERQVKEAIEIYKNFFEELGIPYIMSQ 199

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +      A +                  +R +++G + + G  ++       +  DG   
Sbjct: 200 RPEWDKFAGAIYTIAFD------TIMPDSRVLQIGTVHHLGQHFTKAFDLKVQRKDGTLD 253

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACE 366
           Y    SYGI + RV+A  +  + D  G I    +AP K  +I I A D+       +  E
Sbjct: 254 YPHQTSYGI-SDRVIAVAVSINGDDHGTILSPVLAPIKAVIIPIPAKDEKETEKIIEYSE 312

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +   L   G +   D D  +  G ++ + ++ G PL++ +G + +S + V IK R T  
Sbjct: 313 DVAKILVSNGINTVIDKDTEKTPGEKYYIWEIKGVPLRIEIGPRELSSNSVFIKRRDTLQ 372

Query: 426 REDMSLEEVINYASHRFSNNRPVL 449
              +  E +++         R  L
Sbjct: 373 GISVKKENLVSEVVKLLETLRKDL 396


>gi|254724859|ref|ZP_05186642.1| prolyl-tRNA synthetase [Bacillus anthracis str. A1055]
          Length = 510

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|134076914|emb|CAK45323.1| unnamed protein product [Aspergillus niger]
          Length = 497

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 1/186 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  D +  +I +     GA ++S+ +L + +LW +SGR    G E+ R  DR +
Sbjct: 1   MLPLGLRVQDKLERLIDKHMRTVGASKVSLSSLSAQELWEQSGRL-KEGSEIFRFQDRKE 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +     KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  SRFLLAPTHEEEITTLVGHLTKSYRDLPVRVYQISRKYRDEQRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +Y  +  +Y  +F  L +  +   A+SG +GG LSHEF   ++ GE  V
Sbjct: 120 TFDYNAENALKTYTAVKKAYTELFDELKIPYLVAAADSGNMGGSLSHEFHFASNKGEDTV 179

Query: 222 FCSKDF 227
                 
Sbjct: 180 XSCSSC 185



 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 76/137 (55%), Gaps = 1/137 (0%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   +QMG +GIG  R+++AV ++  D KG+ WP ++AP+++ ++  K  ++      + 
Sbjct: 361 QLVPMQMGCHGIGVSRMISAVADNLADSKGLNWPRAIAPYEVIVVPAKGMEEEAVQIYDA 420

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + +  +    DV  DD  +Q+G +   ADL+G+P+ V+VG  +     +E++ R   +RE
Sbjct: 421 LTSEPTTA-LDVILDDRDKQMGWKLGDADLIGYPVIVVVGKGWKKQRTLEVQCRRLEVRE 479

Query: 428 DMSLEEVINYASHRFSN 444
           D++LE +  +       
Sbjct: 480 DVALEALPEFVGSLLEK 496


>gi|228913143|ref|ZP_04076782.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228846548|gb|EEM91561.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 502

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 87  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 121 -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 162

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 163 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 215

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 216 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 271

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 272 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 330

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 331 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 389

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 390 DTKEKEFISMDQLEERIPALLEE 412


>gi|224023751|ref|ZP_03642117.1| hypothetical protein BACCOPRO_00467 [Bacteroides coprophilus DSM
           18228]
 gi|224016973|gb|EEF74985.1| hypothetical protein BACCOPRO_00467 [Bacteroides coprophilus DSM
           18228]
          Length = 285

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 106/323 (32%), Gaps = 57/323 (17%)

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R E      G+ R R F   DA+ F   P+  K  + ++      +F  +  ++  
Sbjct: 1   GTVCRYEQSGELHGLTRVRSFTQDDAHIF-CRPDQVKDEFLRVMDIISIVFKSMNFENFE 59

Query: 195 MRAESGP-------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            +            IG D + E        E  +  + +    P                
Sbjct: 60  AQISLRDKVNREKYIGSDENWE------KAEQAIIEACEEKGLPAK-------------- 99

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLP--MSATF 302
                            E    +    K        +G  +  GT    Y+LP      +
Sbjct: 100 ----------------VEYGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEY 143

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+D + H  V +     G+M    AV+     GK  +W   + P +++++ +    +  
Sbjct: 144 MGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW---LTPDQVAILPV---SEKY 197

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K       DD  E+IG +    ++   P  +IVG K   + +V ++ +
Sbjct: 198 NEYADHVRLELKKNDIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENEEVSVRKQ 257

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G +  M +E+     +    N
Sbjct: 258 GEGDQGTMKIEDFAKNIAEEVHN 280


>gi|228963504|ref|ZP_04124661.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228796198|gb|EEM43649.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 476

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WITHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|288801214|ref|ZP_06406669.1| proline--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331825|gb|EFC70308.1| proline--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 493

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D
Sbjct: 232 MMQDGKALQSGTSHFLGQNFAKSFDVTFLNKENKAEYVWATSWGV-STRLIGALIMTHSD 290

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGS 390
             G++ P  +AP ++ +I I   ++      EK+    ++L + G  V +DD   ++ G 
Sbjct: 291 DNGLVLPPKLAPIQVVIIPIAKGEEQLSAITEKLQPVISKLRENGISVKFDDSDNKRPGF 350

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +FA  +L G P+++++G + +  + VEI  R T  +E +SL  +  +      N +
Sbjct: 351 KFADYELKGVPVRLVMGGRDLESNTVEIMRRDTLEKETVSLNGIAEHIIQLLDNIQ 406



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 24/194 (12%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + AE  S     L+++  +  Q + +G     P G    + +   + +    TGA
Sbjct: 5   LKELTKRAENYSQWFNDLVIKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGA 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+   + + KE   +                    R ++ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVEGFAKECAVVTHYRLKNSESGAGVVVDPSARLEEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ IKS+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIKSWRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATK 183

Query: 168 EGSKHSYNKMFVSY 181
           E +     KM   Y
Sbjct: 184 EEAVEEARKMLSVY 197


>gi|145507630|ref|XP_001439770.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406965|emb|CAK72373.1| unnamed protein product [Paramecium tetraurelia]
          Length = 698

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 140/432 (32%), Gaps = 70/432 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  +I  +   G Y   P      + +     +            P   SA  L 
Sbjct: 217 QQVIRKAELIEYYDVSGCYILRPWAYFIWEQIQRYFDDLIRTEEVENTYFPMFLSAKHLN 276

Query: 81  VESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    +    + +   PT E +M   F   ++S+R+LP    Q  
Sbjct: 277 KEKEHVEGFKAEVAWVTKYGESDLNEPLAIRPTSETIMYPAFAKWVQSHRDLPLKVNQWT 336

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++   T E +      +   Y +++    L ++P+ 
Sbjct: 337 NIVRWEFKFPTPFIRTREFLWQEGHTAHSTREEAVKQVYTILDFYEQVYGE--LLAVPVI 394

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G     E     D   T        ++  IP          S +          
Sbjct: 395 K-----GIKTESEKFAGGDFTTT--------VETIIPQNGRGLQGATSHHLGQNFSKMFE 441

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               D   +K F                                             + +
Sbjct: 442 INFEDDKKQKAFAWQTSWG--------------------------------------LTT 463

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLS 373
             IGAM +         D KG++ P  +A ++I +I I   D   Q   + CE+I   L 
Sbjct: 464 RSIGAMIMFHG------DDKGLVLPPRIAKYQIVIIPIIHKDLDEQQLNERCEQIRQLLV 517

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K    V  D       G +F   +  G P+++ +G     +++V +  R    +  + +E
Sbjct: 518 KQKLRVHLDSRDNYSPGWKFNKWEQKGVPIRLEIGPGEFKNNEVRVVQRFDNKKYQIKME 577

Query: 433 EVINYASHRFSN 444
           E+ N  +    N
Sbjct: 578 EL-NQLNQILDN 588


>gi|30260563|ref|NP_842940.1| prolyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47525667|ref|YP_017016.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183410|ref|YP_026662.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|227813066|ref|YP_002813075.1| prolyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|254686784|ref|ZP_05150642.1| prolyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254738991|ref|ZP_05196693.1| prolyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744578|ref|ZP_05202257.1| prolyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254756164|ref|ZP_05208193.1| prolyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254761982|ref|ZP_05213831.1| prolyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|81584321|sp|Q81Z76|SYP2_BACAN RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|30253931|gb|AAP24426.1| proline--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47500815|gb|AAT29491.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177337|gb|AAT52713.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|227002361|gb|ACP12104.1| proline--tRNA ligase [Bacillus anthracis str. CDC 684]
          Length = 508

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|91217375|ref|ZP_01254335.1| prolyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91184483|gb|EAS70866.1| prolyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 492

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 151/435 (34%), Gaps = 59/435 (13%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +    + +G  +  P G    + + A +  +   TG      P      L+ 
Sbjct: 17  NELVVKADLAENSAVRGCMTIKPYGYAIWEKIQAELDSKFKDTGHENAYFPLFVPKSLFE 76

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                          A+  +                F                +   +R 
Sbjct: 77  ---------------AEEKNAEG-------------FAKECA-----------VVTHYRL 97

Query: 142 ELRP-RFGVMRSR-EFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +  P R G +R   E  + +      T E    +++     SY  +  ++   +  +R E
Sbjct: 98  QSDPDRPGKLRVDPEAKLDEELVVRPTSEAVIWNTFKGWIQSYRDLPLKINQWANVVRWE 157

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   + EF+                    I +   +F +      +++   +    
Sbjct: 158 MRTRLFLRTTEFLWQEGHTAHATKTEAVEEAELINTLYANFVEKFMAIPVIQGIKSESEK 217

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +        ++L ++     + ++ G   + G  ++   +  F    GK  YV   S+G
Sbjct: 218 FAGAEETYCIEALMQDG----KALQAGTSHFLGENFAKAFNVKFTSDQGKQEYVWATSWG 273

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKV 375
           + + R++ A++ +  D  G++ P ++AP ++ ++ I  +++      +    I   L   
Sbjct: 274 V-STRLMGALVMTHSDDNGLVLPPNLAPIQVVIVPIFKNEEQLELVSEKANLIANDLKSK 332

Query: 376 GCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE------- 427
           G  V +D+    + G +FA  +L G PL++ +G K +    VE+  R T  +        
Sbjct: 333 GVRVKFDNRTTHKPGWKFAEYELKGIPLRIAIGPKDLEKGTVELARRDTLSKTFENQEGL 392

Query: 428 DMSLEEVINYASHRF 442
            + +E ++    H  
Sbjct: 393 TVVIENLLKDIQHDL 407


>gi|326203342|ref|ZP_08193207.1| prolyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986600|gb|EGD47431.1| prolyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 478

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 145/445 (32%), Gaps = 71/445 (15%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     +  + AE+  +             +G     P G    +N+   +      TG 
Sbjct: 18  FAQWYTDVIKKAELVDYS----------SVRGCMVIKPYGYAIWENLQKALDTRFKATGH 67

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             + +P                +  E L L ++          H E              
Sbjct: 68  ENVYMPM---------------FIPESLLLKEKE---------HVEGFAPEVA------- 96

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
                         DE       +R           F      S  SY  +   Y +   
Sbjct: 97  --------WVTHGGDEKLTERLCVRP-----TSETLFCEHYSNSIQSYRDLPKLYNQWC- 142

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--DFDDIIS 244
                 +     + P    L  EF  L   G T    +++  +  I   N   D  + + 
Sbjct: 143 ----SVVRWEKTTRPFLRTL--EF--LWQEGHTAHATAEEAQEETIKMLNVYADVLENVL 194

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +++         +  H     +SL  +     + ++ G    FG  ++      +  
Sbjct: 195 AIPVIKGRKTDKEKFAGAHATYTIESLMHDG----KALQSGTSHNFGDGFAKAFDIQYTD 250

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +  YV   S+G+   R++ A+I    D  G++ P +VAP ++ +I +  H +   + 
Sbjct: 251 KNNQLQYVHQTSWGVT-TRLIGAIIMVHGDDSGLVLPPAVAPTQLIIIPVSQHKEGVLEK 309

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  RLS     V  DD  +  G +F+  ++ G P+++ +G K +  ++  +  R   
Sbjct: 310 ANELKDRLS-AKFRVKMDDSDKMPGWKFSEYEMKGVPMRLEIGPKDIEKNQAVLVRRDNR 368

Query: 425 IREDMSLEEVINYASHRFSNNRPVL 449
            +  +SL+ +     +  ++ +  L
Sbjct: 369 EKIFVSLDNLEETVENTLADIQNSL 393


>gi|160890380|ref|ZP_02071383.1| hypothetical protein BACUNI_02821 [Bacteroides uniformis ATCC 8492]
 gi|270296935|ref|ZP_06203134.1| prolyl-tRNA synthetase [Bacteroides sp. D20]
 gi|317479089|ref|ZP_07938230.1| prolyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860112|gb|EDO53543.1| hypothetical protein BACUNI_02821 [Bacteroides uniformis ATCC 8492]
 gi|270272922|gb|EFA18785.1| prolyl-tRNA synthetase [Bacteroides sp. D20]
 gi|316904745|gb|EFV26558.1| prolyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 497

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 147/432 (34%), Gaps = 51/432 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +  Q + +G     P G    + +   + +    TG +    P L       
Sbjct: 20  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLS 79

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                                        E    + F                +   +R 
Sbjct: 80  R----------------------------EAEHVEGFAKECA-----------VVTHYRL 100

Query: 142 ELRPRFGVMRSREFLMKDAY-SFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P  G +        +       T E    ++Y     SY  +       +   R E 
Sbjct: 101 KNDPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF  L   G T     ++  +  +   N   +      ++        A  
Sbjct: 161 RTRLFLRTAEF--LWQEGHTAHATREEAEEEAVKMLNVYAEFAEKYMAVPVVKGVKSANE 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                   +    E      + ++ G   + G  ++      F   + K  YV   S+G+
Sbjct: 219 RFAGALNTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G
Sbjct: 277 -STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMG 335

Query: 377 CDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  ++ G P+++++G + + ++ +EI  R T  +E  S E + 
Sbjct: 336 ISVKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCEGIE 395

Query: 436 NYASHRFSNNRP 447
            Y      + + 
Sbjct: 396 EYVKDLLEDIQA 407


>gi|229028244|ref|ZP_04184383.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1271]
 gi|228733080|gb|EEL83923.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1271]
          Length = 476

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAKWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLHILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQEHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E ++++++          
Sbjct: 364 DTKEKEFIAMDQLEERIPALLEE 386


>gi|229100656|ref|ZP_04231504.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
 gi|229119259|ref|ZP_04248564.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228664184|gb|EEL19720.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228682749|gb|EEL36779.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
          Length = 476

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 141/450 (31%), Gaps = 71/450 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 61  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +     R    + P    +  +      E   + +T E     ++      + +   + 
Sbjct: 137 NQWCSVVRWEKTTRPFLRTTEFLW----QEGHTIHETAEES--QAETLNILNLYASFCEE 190

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I +    +     +A     +  +             + ++ G    FGT +S    
Sbjct: 191 YLAIPVIKGQKTEKEKFAGAKATYTIESL-------MHDGKALQTGTSHNFGTNFSEAFD 243

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +
Sbjct: 244 IKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKE 302

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++  R+ KV   V  D   +  G +F   ++ G P+++ VG K +  ++V + 
Sbjct: 303 GVLEKATELQGRIQKV-ARVKIDASTKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLV 361

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            R T  +E +S++++              L
Sbjct: 362 RRDTKEKECISMDQLEERILSLLEEIHHSL 391


>gi|300119016|ref|ZP_07056727.1| prolyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|298723632|gb|EFI64363.1| prolyl-tRNA synthetase [Bacillus cereus SJ1]
          Length = 476

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|145505431|ref|XP_001438682.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405854|emb|CAK71285.1| unnamed protein product [Paramecium tetraurelia]
          Length = 698

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 139/432 (32%), Gaps = 70/432 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  +I  +   G Y   P      + +     +            P   SA  L 
Sbjct: 217 QQVIRKAELIEYYDVSGCYILRPWAYFIWEQIQRYFDDLIRTEEVENTYFPMFLSAKHLN 276

Query: 81  VESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    +    + +   PT E +M   F   ++S+R+LP    Q  
Sbjct: 277 KEKEHVEGFKAEVAWVTKYGESDLNEPLAIRPTSETIMYPAFAKWVQSHRDLPLKVNQWT 336

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++   T E +      +   Y +++    L ++P+ 
Sbjct: 337 NIVRWEFKFPTPFIRTREFLWQEGHTAHATREEAVKQVYTILDFYEQVYGE--LLAVPVI 394

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G     E     D   T        ++  IP          S +          
Sbjct: 395 K-----GIKTESEKFAGGDFTTT--------VETIIPQNGRGLQGATSHHLGQNFSKMFE 441

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               D   +K F                                             + +
Sbjct: 442 INFEDDKKQKAFAWQTSWG--------------------------------------LTT 463

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLS 373
             IGAM +         D KG++ P  +A ++I +I I   D       + CE+I   L 
Sbjct: 464 RSIGAMIMFHG------DDKGLVLPPRIAKYQIVIIPIIHKDLDENQLNERCEQIRQILV 517

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K    V  D       G +F   +  G P+++ +G     +++V +  R    +  + LE
Sbjct: 518 KQKLRVHLDSRDNYSPGWKFNKWEQKGVPVRLEIGPGEFKNNEVRVVQRFDNKKYQIKLE 577

Query: 433 EVINYASHRFSN 444
           E+ N  +    N
Sbjct: 578 EL-NQLTQILDN 588


>gi|224130834|ref|XP_002320936.1| predicted protein [Populus trichocarpa]
 gi|222861709|gb|EEE99251.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 130/435 (29%), Gaps = 78/435 (17%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +   G Y   P      + +      E  +        P   S+  L  E    + 
Sbjct: 37  MIEYYDISGCYILRPWAMSIWEIMQVFFDAEIKKMKIKNCYFPLFVSSSVLEKEKDHIEG 96

Query: 89  YGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +           +   PT E VM   F   I+ +R+LP    Q     R E  
Sbjct: 97  FAPEVAWVTKSGKSDLEIPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 156

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +R REFL ++ ++   T + +     ++   Y RI+      +IP+      I G
Sbjct: 157 NPTPFIRYREFLWQEGHTAFATKQEADEEVLQILELYRRIYEE--FLAIPI------IKG 208

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S          E + F    +              I    S             +  N
Sbjct: 209 KKS----------EMEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFEN 258

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           EK    +      +     +G                                       
Sbjct: 259 EKGEKGMAWQNSWAYSTRTIG--------------------------------------- 279

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFW 381
              ++    D KG++ P  V+  ++ ++ +   D   Q   DAC      L + G     
Sbjct: 280 --VMVMVHGDDKGLVLPPKVSSVQVIVVPVPFKDANTQGIFDACAATVDTLCEAGIRAEA 337

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI---------KHRLTGIREDMSL 431
           D       G +++  ++ G PL++ +G K +++++  I           R    + D+S 
Sbjct: 338 DYRENYSPGWKYSHWEMKGVPLRIEIGPKDLANNQASIPSLHFTVRAVRRDNAAKVDISC 397

Query: 432 EEVINYASHRFSNNR 446
           + +         + +
Sbjct: 398 DNLAEKVKDMLDDIQ 412


>gi|189205755|ref|XP_001939212.1| prolyl-tRNA synthetase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975305|gb|EDU41931.1| prolyl-tRNA synthetase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 562

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 150/443 (33%), Gaps = 71/443 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  MI  +   G Y   P      +N+      +           P   SAD L 
Sbjct: 63  QQVITKGQMISYYDVAGCYILEPASYAIWENIQKWFDAKIKTLKVRNAYFPIFISADNLE 122

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E  M   F   I+S+R+LP    Q  
Sbjct: 123 REKEHVEGFAAEVAWVTKGGKSDLEKPIAVRPTSETAMYPYFARKIQSHRDLPLKLNQWN 182

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++   Y  +F +  L ++P+ 
Sbjct: 183 SVVRWEFKHPMPFIRTREFLWQEGHTAHLTREEASAEVLQILDWYSDVFQK--LLAVPV- 239

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                          ++   P  +        + +      A  
Sbjct: 240 -------------------------VKGMKTINEKFPGADYTTTVEGFIPATGRGVQAAT 274

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +     H  K+FD     K       E G   +                     +V   S
Sbjct: 275 SHCLGQHFSKMFD----IKVEDPTAKEAGKSEH--------------------VHVWQNS 310

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR----- 371
           +G+   R +  +I +  D +G++ P  VA  ++ +I +    ++  +A E++Y++     
Sbjct: 311 WGLT-TRSIGVMILTHGDNRGLVIPPRVAEVQVVVIPVGVTAKMSAEAKEELYSKVKKIA 369

Query: 372 --LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-- 426
             L + G  V  D   G   G +F   +L G PL++  G K      V    R    +  
Sbjct: 370 DDLIEAGVRVETDYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRDIDDKDA 429

Query: 427 --EDMSLEEVINYASHRFSNNRP 447
               +S++ ++          + 
Sbjct: 430 ARGTISVDNLVEEVPKLLEQIQE 452


>gi|215741276|dbj|BAG97771.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 366

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 119/343 (34%), Gaps = 71/343 (20%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +F   I+SYR+LP    Q     R E+R     +R+ EFL ++ ++   T E +     K
Sbjct: 1   MFTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQEGHTAHATLEEA----EK 55

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             +  + ++                                    F  +      IP   
Sbjct: 56  EAMQMIDVYT----------------------------------KFAYEQAAIPVIPGRK 81

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           +  +     N                                 + ++ G     G  +S 
Sbjct: 82  SRVETFAGANRTYTIEAM---------------------MGDRKALQAGTSHNLGQNFSR 120

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-K 355
                F   + +  +V   S+ I + R V  +I +  D  G++ P ++AP ++ ++ I K
Sbjct: 121 AFGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPNIAPIQVVIVPIWK 179

Query: 356 AHDQV--CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVS 412
             D+     +A   +   L + G  V  DD   +  G +F   ++ G P+++ +G + V+
Sbjct: 180 KGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGVPIRLEIGPRDVT 239

Query: 413 DSKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
           +  V I  R      G    +S++   ++++   R    +  L
Sbjct: 240 NKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASL 282


>gi|196040211|ref|ZP_03107513.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|229089515|ref|ZP_04220784.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
 gi|196029066|gb|EDX67671.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|228693822|gb|EEL47516.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
          Length = 476

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|228919324|ref|ZP_04082694.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840431|gb|EEM85702.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 502

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 87  -------------------KGTGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 121 -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 162

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 163 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 215

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 216 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 271

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 272 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 330

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +   +V +  R
Sbjct: 331 LAKATELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKKQVVLVRR 389

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 390 DTKEKEFVPMDQLEERIPALLEE 412


>gi|51102316|gb|AAT95871.1| prolyl-tRNA synthetase [Entamoeba invadens]
          Length = 458

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 138/429 (32%), Gaps = 69/429 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           ++++R+ +I  +   G Y   P      +N+   I +   R G      P   S A L  
Sbjct: 2   EIVVRSQLIEYYDISGCYILRPAAYGLWENIQQFIDKRIKRMGVENTYFPCFVSQAALKK 61

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E VM   F++ I  +R+LP    Q   
Sbjct: 62  EEDELNGFTPEVAWVTKSGSSDLQEPIALRPTSETVMYPAFKNWITGHRDLPLKVNQWCN 121

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E    +  +R+REFL ++ ++        +    ++   Y  ++    L ++P+  
Sbjct: 122 VVRWEFSHPYPFIRTREFLWQEGHTAYDNQPDCEKECRQILELYASVYED--LLAVPV-- 177

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S         GET             P        +  +     +      
Sbjct: 178 ----IRGKKS--------KGET------------FPGAYYSLT-VECIIPTNGRSVQAAT 212

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +           ++        +     + +   T+                      S 
Sbjct: 213 SHHLGQTFSKLFNIQYEDDSKKKQFVFQNSWGLSTR----------------------SI 250

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSK 374
           G+           +  D KGII P   A  ++ ++ +    +++        ++   L  
Sbjct: 251 GVTV--------MTHGDNKGIILPPRAAGKQVVIVPLHHKGSNNDEIDAKANELCELLLD 302

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                F D       G +F   +L G PL++ +G +  +  KV I  R  G +E+   E 
Sbjct: 303 NDIRAFADCNDMHNPGWKFTEYELRGIPLRIELGPRDFAGKKVVIVRRDNGAKEECLWEN 362

Query: 434 VINYASHRF 442
           ++       
Sbjct: 363 LVATIKKTI 371


>gi|229068144|ref|ZP_04201451.1| Prolyl-tRNA synthetase 2 [Bacillus cereus F65185]
 gi|228714958|gb|EEL66826.1| Prolyl-tRNA synthetase 2 [Bacillus cereus F65185]
          Length = 476

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  +I E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVIDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KGTGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQAHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 364 DTKEKEFVPMDQLEERIPALLEE 386


>gi|229154159|ref|ZP_04282283.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
 gi|228629295|gb|EEK85998.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
          Length = 502

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 87  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 121 -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 162

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 163 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 215

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 216 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 271

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 272 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 330

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 331 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 389

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E ++++++          
Sbjct: 390 DTKEKEFIAMDQLEERIPALLEE 412


>gi|45357977|ref|NP_987534.1| threonyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|73919806|sp|Q6M057|SYT_METMP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|44920734|emb|CAF29970.1| Threonyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 622

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/438 (14%), Positives = 141/438 (32%), Gaps = 54/438 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           ++ EI  ++     G           W P G+   D ++  +       G + +  P + 
Sbjct: 205 KEKEICDYEPSSDAGHFR--------WYPKGKLIRDLLSDYVYNLVVERGGMPVETPVMY 256

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      D +G+   R   +  K ++           + +      ++LP   Y++
Sbjct: 257 DLQNNAIREHADKFGERQYRFT-QGGKDLMLRFAACFGQFMMKKDMYLLPKHLPLRLYEL 315

Query: 136 QL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E R    G+ R R F M D ++  +  + +  ++       L+          
Sbjct: 316 STYSFRYEQRGELVGLKRLRAFTMPDMHTVCMDMKQAMEAFEDQLWMGLKTGDDFKTPYA 375

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   +     +    F  +A                       ++      ++I+E  +
Sbjct: 376 IIFRFTQDFFDENKEWFFAMA----------------------KEYKQKYGKDAILEILS 413

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                     +  + DS           I+V     FG              D K H + 
Sbjct: 414 GRKHYWVGKVDMAVVDSFGRPIENPTVQIDVESAERFG--------IVVHDGDKKVHPII 465

Query: 314 MGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +     G++ RV+  ++E+++    + K    P  + P +  +I +    +   +   ++
Sbjct: 466 LHCSPTGSVERVLCGLLENAYLNTLENKPPALPTWLTPIQARVIPVGDKHE---EYALEV 522

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--- 425
             +L   G    +DD  E +G +   A        V++G   +   K+ +  R       
Sbjct: 523 VNKLRSSGIRADFDDREESMGKKIRNAGTDWVNYVVVIGDSEMESGKLTVTVREESELKK 582

Query: 426 --REDMSLEEVINYASHR 441
             +E +S+EE+I   S  
Sbjct: 583 PKKESLSVEELIEKISSE 600


>gi|302678395|ref|XP_003028880.1| hypothetical protein SCHCODRAFT_236922 [Schizophyllum commune H4-8]
 gi|300102569|gb|EFI93977.1| hypothetical protein SCHCODRAFT_236922 [Schizophyllum commune H4-8]
          Length = 706

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 133/426 (31%), Gaps = 57/426 (13%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +L+  M+  +S  G Y   P      + +     +E  + G      P   S   L  E 
Sbjct: 220 LLKADMLDYYSVSGCYILKPWSYSIWEEIQDWFNKEIKKLGVQNSYFPMFVSQSVLEREK 279

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +         + +   PT E  M   +   I+S+R+LP    Q     
Sbjct: 280 DHVEGFSPEVAWVTRAGQSDLQEPIAIRPTSETAMYPYYSKWIQSHRDLPLKLNQWNSVV 339

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT   +     ++   Y +I+    L ++P+    
Sbjct: 340 RWEFKNPQPFLRTREFLWQEGHTAFLTKPEADAEVRQILDLYRQIYED--LLAVPV---- 393

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             I G  S          E + F    +         T    I +  S            
Sbjct: 394 --IPGIKS----------EKEKFAGGLYTTTIEGFIPTSGRGIQAATSHCLGQNFSRPEM 441

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            ++  E    S P  K          + +   T+    M        G     ++ S   
Sbjct: 442 FNISVEDP--SKPNEKLYVW-----QNSWGLSTRTIGVMVMVHGDNQGLVLPPRVAS--- 491

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                + AVI       G                     +   D CE I   L   G   
Sbjct: 492 -----IQAVIVPCGIKAG---------------ASDEERKSINDKCEAIAQELRDGGVRA 531

Query: 380 FWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEVINY 437
             D       G +F   +  G PL++ +G K +     + ++ R TG +  + LE +   
Sbjct: 532 KADLRDIYTPGYKFNDWEQKGVPLRLEIGPKDLEKKSTLTVR-RDTGAKAPLPLENIAAG 590

Query: 438 ASHRFS 443
            S    
Sbjct: 591 VSSLLE 596


>gi|49479045|ref|YP_034723.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|81397340|sp|Q6HNZ7|SYP2_BACHK RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|49330601|gb|AAT61247.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 476

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|32473557|ref|NP_866551.1| prolyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|81658286|sp|Q7UGJ7|SYP_RHOBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32398237|emb|CAD78332.1| prolyl tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 506

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/452 (15%), Positives = 146/452 (32%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-L 79
           ++ ++R   + ++S   G     P G +  +NV   + +    TG      P       L
Sbjct: 26  YQQVIRAADLAENSPVRGCMVIKPWGYQLWENVQRALDDMFKATGHQNAYFPLFIPMSFL 85

Query: 80  WVESGRYDSYGKEMLRLADRN---------------DKAMIYGPTHEEVMTDIFRSHIKS 124
             E+   + + KE   +                   ++ +I  PT E ++   +   ++S
Sbjct: 86  EKEAEHVEGFAKECAVVTHHRLEPDPDGGLRPAGKLEEPLIVRPTSETIIGATYAKWVQS 145

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E       MR+R FL    + +                     
Sbjct: 146 YRDLPILINQWANVVRWE-------MRTRMFLRTAEFLWQ-------------------- 178

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                   E   +  T E  V  ++  ++        DF +   
Sbjct: 179 ------------------------EGHTVHATSEEAVEETEKMVEVY-----RDFAENWM 209

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++     P             +++ +++    + ++ G   + G  +S      F+ 
Sbjct: 210 AMPVIVGSKTPLERFPGAVETLSIEAMMQDR----KALQAGTSHFLGQNFSKAQEIKFQS 265

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCR 362
             G   +    S+G+ + R++ A+I +  D  G++ P  +AP  + +  I   D      
Sbjct: 266 ESGDIEFAWTTSWGV-STRLIGALIMTHSDDDGLVLPPRLAPTHVVIQPIYKDDSRAEVM 324

Query: 363 DACEKIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  + +   L+          V  DD   + G +       G P+++ VG K ++   V 
Sbjct: 325 EYVQSLRDELAAQTYANAPVRVTIDDRDIRGGEKKWYHVKRGVPIRLEVGPKDIAAGTVF 384

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              R       +   E++     + +  +  L
Sbjct: 385 CGIRNQPKSVGIDRAELVATIGEKLATLQQEL 416


>gi|331703337|ref|YP_004400024.1| Proline tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801892|emb|CBW54045.1| Proline tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 474

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 146/415 (35%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKEKDHIEGFSPEIAT 94

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +K +       PT E VM D F + I SYR+LP  + Q     R E         
Sbjct: 95  VTKVGEKQLEENLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL    + +           + +  SY        LK + +                
Sbjct: 148 TRPFLRTSEFLW--------QEGHTVHSSYNEA-EDFCLKILNIY--------------- 183

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   + F  +  +   I  + T+ +                A  +      +FD  
Sbjct: 184 --------EKFAKEILLLPVICGKKTEKEKFAG------------AKDTYTIESLMFDGQ 223

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +
Sbjct: 224 ---------ALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMT 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  ++P +   I    + +      E I  +LS    DV  D+  +  G +
Sbjct: 274 HSDDNGLVLPSKISPIQ-IQIIQIKNTEQIDQVVEIIKDKLSDYRIDV--DNSDKSFGFK 330

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
            + A++ G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 331 ISEAEIKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|256384016|gb|ACU78586.1| proline--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384848|gb|ACU79417.1| proline--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455440|gb|ADH21675.1| proline--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 474

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 145/415 (34%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKEKDHIEGFSPEIAT 94

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +K +       PT E VM D F + I SYR+LP  + Q     R E         
Sbjct: 95  VTKVGEKQLEENLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL    + +           + +  SY        LK + +                
Sbjct: 148 TRPFLRTSEFLW--------QEGHTVHSSYNEA-EDFCLKILNIY--------------- 183

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   + F     +   I  + T+ +                A  +      +FD  
Sbjct: 184 --------EKFAKDILLLPVICGKKTEKEKFAG------------AKDTYTIESLMFDGQ 223

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +
Sbjct: 224 ---------ALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMT 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  ++P +   I    + +      E I  +LS    DV  D+  +  G +
Sbjct: 274 HSDDNGLVLPSKISPIQ-IQIIQIKNTEQIDQVVEIIKDKLSDYRIDV--DNSDKSFGFK 330

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
            + A++ G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 331 ISEAEIKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|65317824|ref|ZP_00390783.1| COG0442: Prolyl-tRNA synthetase [Bacillus anthracis str. A2012]
          Length = 383

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D 
Sbjct: 95  MHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDN 153

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F   
Sbjct: 154 NGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKFNEY 212

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 213 EMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 261



 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY +LP  + Q     R E +     +R+ EFL ++ ++   T E S+     +   Y  
Sbjct: 3   SYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYAS 61

Query: 184 IFHR 187
               
Sbjct: 62  FCED 65


>gi|253680953|ref|ZP_04861756.1| proline--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253562802|gb|EES92248.1| proline--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 500

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 79/169 (46%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I    D 
Sbjct: 244 MHDGKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGVT-TRLIGAIIMVHGDD 302

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G+  P  +AP ++ ++ I  H +   D  E++  ++SKV   V  D   +  G +F   
Sbjct: 303 SGLKLPPRIAPLQVVIVPIAQHKEGVLDKAEELRQQISKV-ARVKVDSSDKMPGWKFNEY 361

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K + +++V +  R T  +  +S++E+         +
Sbjct: 362 EMKGVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDELETKIPELLDD 410



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             KG     P G    +N+   +  +  
Sbjct: 36  MDEDFAKWYTDIVKKAELVDYA----------SVKGCMIIRPYGYAIWENIQKYLDTKFK 85

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     D   + +   PT E +  D 
Sbjct: 86  ETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTQGGNDTLAERLCVRPTSETLFCDH 145

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+S+ +LP  + Q     R E +     +R+ EFL ++ ++   T E S      M
Sbjct: 146 YAKIIQSHNDLPKKYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTAHATAEESAQETIDM 204

Query: 178 FVSYLRIFH 186
             +Y     
Sbjct: 205 LNTYADFCE 213


>gi|229077749|ref|ZP_04210378.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
 gi|228705571|gb|EEL57928.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
          Length = 476

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KGTGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFVSMDQLEERIPALLEE 386


>gi|153217256|ref|ZP_01951020.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113711|gb|EAY32531.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 410

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 5/181 (2%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M   +  N +     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIF-CTEDQIQQEVTSCIKMVYDTY 409

Query: 186 H 186
            
Sbjct: 410 T 410


>gi|47567221|ref|ZP_00237935.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|206974268|ref|ZP_03235185.1| prolyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217957991|ref|YP_002336535.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229137257|ref|ZP_04265874.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
 gi|47556064|gb|EAL14401.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|206747508|gb|EDZ58898.1| prolyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217066763|gb|ACJ81013.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228646252|gb|EEL02469.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
          Length = 476

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E ++++++          
Sbjct: 364 DTKEKEFIAMDQLEERIPALLEE 386


>gi|187734550|ref|YP_001876662.1| prolyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|259511572|sp|B2UL92|SYP_AKKM8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187424602|gb|ACD03881.1| prolyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 506

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 130/443 (29%), Gaps = 92/443 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEM--- 93
           G     P G    + +   + +    TG      P L   + L  E+   + +  E    
Sbjct: 36  GCMVIKPWGYAIWELIQKDLDQRFKDTGHTNAYFPLLIPISYLEKEAEHAEGFATECAVV 95

Query: 94  -----------------LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
                            +       +  +  PT E V+   F     SYR+LP    Q  
Sbjct: 96  THHRLEAQKDEATGKTRMIPTGELTEPFVIRPTSETVIGAAFARWTSSYRDLPLKVNQWC 155

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E+RPR        FL    + +                                 
Sbjct: 156 NVMRWEMRPRI-------FLRTAEFLWQ-------------------------------- 176

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                       E     +T E  +  +                +    + +        
Sbjct: 177 ------------EGHTAHETREEAIEETLTMH---------KVYEEFQRDVLAIPTIPGE 215

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++           E      + I+ G   + G  +S   +  F G D    +    S
Sbjct: 216 KTEAERFPGAEQTYTVEAMVQDRKAIQAGTSHFLGQNFSKSQNICFAGRDNTQQFAWTSS 275

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLS 373
           +G+ + R++ A+I    D  G++ P  VAP +I +I +   ++      D CE++   L 
Sbjct: 276 WGV-STRMIGALIMMHSDDDGLVCPPRVAPQQIVIIPVTPKEESRQAVLDHCEELARTLR 334

Query: 374 K-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGIR 426
                     V  D      G++       G P+++ +G + +    V ++ R      +
Sbjct: 335 AKTFHGQPLRVLVDRRDLGGGAKKWEWVKKGVPVRLEIGPRDLEKGSVCLQRRDRPANEK 394

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             +   E+I+ A+    + +  L
Sbjct: 395 SFVPETELIDTAADILQSIQDTL 417


>gi|228983651|ref|ZP_04143854.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776089|gb|EEM24452.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 476

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E ++++++          
Sbjct: 364 DTKEKEFIAMDQLEERIPALLEE 386


>gi|145347579|ref|XP_001418241.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578470|gb|ABO96534.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 524

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 117/417 (28%), Gaps = 71/417 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      E           P   SA  L  E    + +  E+  
Sbjct: 66  SGCYILKPWAYAQWEYLKEFFDREIKELEVENCYFPMFVSASRLEAEKDHIEDFAPEVAW 125

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +      +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 126 VTRSGNTDLEVPIAVRPTSETVMYPHYAQWIRSHRDLPLRLNQWCNVVRWEFKHPTPFIR 185

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   +         ++   Y R++     + + +    G           
Sbjct: 186 SREFLWQEGHTAYSSKAECDVEVRQILELYRRVYE----EYLAVPVVPGK---------- 231

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E + F   D+           +                    + + N +  D+ 
Sbjct: 232 ----KSEKEKFAGGDYTTTV-----EAYVPGSGRGVQGATSHCLGQNFAKMFNIEYEDAK 282

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                V             G      M       DG                        
Sbjct: 283 GGRSLVWQNSWGF-TTRTLG-----VMYMVHGDDDG------------------------ 312

Query: 332 SHDGKGIIWPDSVAPFKISLINI------KAHDQVCRDACEKIYARLSKVGCDVFWDDM- 384
                 ++ P  VAP +  +I I          Q   +    +   L   G     D+  
Sbjct: 313 ------LVLPPKVAPVQAIVIPIPNSKLSDEAKQKMDEIATGMCKSLKAAGVRSKLDNRD 366

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               G ++   +L G P++V  G++ +      I  R T  +E + +E++    S  
Sbjct: 367 NYTPGWKYNHWELKGVPMRVEFGARDLETGTCVIARRDTREKETVKIEDLTKRCSEL 423


>gi|212693169|ref|ZP_03301297.1| hypothetical protein BACDOR_02676 [Bacteroides dorei DSM 17855]
 gi|237709909|ref|ZP_04540390.1| prolyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237725421|ref|ZP_04555902.1| prolyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265753562|ref|ZP_06088917.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212664274|gb|EEB24846.1| hypothetical protein BACDOR_02676 [Bacteroides dorei DSM 17855]
 gi|229436108|gb|EEO46185.1| prolyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229456002|gb|EEO61723.1| prolyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|263235276|gb|EEZ20800.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 496

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 153/445 (34%), Gaps = 52/445 (11%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + +E  S     L+++  +  Q   +G     P G    + +   + +       
Sbjct: 5   LKELTKRSENYSQWYNDLVVKADLAEQSPVRGCMVIKPYGYAIWEKMQRQLDDM------ 58

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
                        + E+G  ++Y   ++  +           + E    + F        
Sbjct: 59  -------------FKETGHVNAYFPLLIPKS---------YLSREAEHVEGFAKECAVVT 96

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIF 185
           +      +             GV+      +++      T E     +Y     SY  + 
Sbjct: 97  HYRLKNAEDGS----------GVIVDPAAKLEEELIIRPTSETIIWSTYKNWINSYRDLP 146

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                 +  MR E        + EF+      E     +          +        + 
Sbjct: 147 ILCNQWANVMRWEMRTRLFLRTAEFLWQ----EGHTAHATREEAEAEAQKMLHVYGDFAE 202

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +         + ++     L     E      + ++ G   + G  ++   +  F   
Sbjct: 203 KYMAVPVIKGVKSANERFAGALDTYTIEGLMQDGKALQCGTSHFLGQNFAKAFNVQFVDK 262

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCR 362
           + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+      
Sbjct: 263 NNKLDYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEMLKKID 321

Query: 363 DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              E I  +L  +G  V +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R
Sbjct: 322 AKVEGIVNKLKAMGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRR 381

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            T  +E  S + +  Y      + +
Sbjct: 382 DTLEKETRSCDGIEEYVQQLLEDIQ 406


>gi|242793409|ref|XP_002482155.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218718743|gb|EED18163.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 593

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 64/443 (14%), Positives = 137/443 (30%), Gaps = 82/443 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G +   P      + +     ++  + G    S P   S D L 
Sbjct: 94  QQVLTKGDMLDYYDVSGCFILKPASYFVWETIQNWFNDKIKKMGVRNCSFPLFVSEDVLQ 153

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 154 REKDHIEGFAAEVAWVTHAGSTPLERKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 213

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R                                             
Sbjct: 214 SVVRWEFKHPQPFLR--------------------------------------------- 228

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  ++   +V    D            ++D++++  +  + T   
Sbjct: 229 --TREFLWQEGHTAHLTEESAAEEVLQILDHYAHV-------YEDLLAVPVVRGKKTEKE 279

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------GKDH 310
                 +   +   +P     + RGI+ G     G  +S     T +  +      G   
Sbjct: 280 KFAGGYYTTTVEGYIPA----TGRGIQGGTSHCLGQNFSKMFGITVEDPNAKGEDKGASL 335

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQVCRDA-- 364
           YV   S+G+ + R +  ++    D +G++ P  VA  +  ++ +       D+       
Sbjct: 336 YVWQNSWGL-STRTIGVMVMIHSDNRGLVLPPRVAEIQTIIVPVGITKNTTDEERAQIYK 394

Query: 365 -CEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            C ++ ++L+ VG     D       G +F   +L G PL++  G        +    R 
Sbjct: 395 DCSELASKLAAVGVRTETDLRDGYSPGYKFNDWELRGVPLRLEFGPGEAKGGFITASRRD 454

Query: 423 ---TGIREDMSLEEVINYASHRF 442
                 +  + L  +        
Sbjct: 455 IPGKDGKTTIPLNSLTTAVPELL 477


>gi|228950947|ref|ZP_04113068.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228808674|gb|EEM55172.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 476

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KGTGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQEHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E + ++++          
Sbjct: 364 DTKEKEFVPMDQLEERIPALLEE 386


>gi|228906179|ref|ZP_04070068.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
 gi|228853588|gb|EEM98356.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
          Length = 502

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                               E+G  + Y   M        K       H E         
Sbjct: 87  -------------------KETGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 121 -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 162

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 163 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 215

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 216 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 271

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 272 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 330

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 331 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 389

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
               +E + ++++          
Sbjct: 390 DRKEKEFVPMDQLEERVPALLEE 412


>gi|229194773|ref|ZP_04321562.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1293]
 gi|228588716|gb|EEK46745.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1293]
          Length = 502

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 87  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              +E       +R           F         SYN +   Y
Sbjct: 121 -------------WVTHGGNEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 162

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 163 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 215

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 216 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 271

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 272 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 330

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 331 LAKALELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 389

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 390 DTKEKEFISMDQLEERIPALLEE 412


>gi|150005824|ref|YP_001300568.1| prolyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254881996|ref|ZP_05254706.1| prolyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294776476|ref|ZP_06741951.1| proline--tRNA ligase [Bacteroides vulgatus PC510]
 gi|319640997|ref|ZP_07995704.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|166980101|sp|A6L5I2|SYP_BACV8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149934248|gb|ABR40946.1| prolyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254834789|gb|EET15098.1| prolyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294449673|gb|EFG18198.1| proline--tRNA ligase [Bacteroides vulgatus PC510]
 gi|317387375|gb|EFV68247.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 496

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 153/445 (34%), Gaps = 52/445 (11%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + +E  S     L+++  +  Q   +G     P G    + +   + +       
Sbjct: 5   LKELTKRSENYSQWYNDLVVKADLAEQSPVRGCMVIKPYGYAIWEKMQRQLDDM------ 58

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
                        + E+G  ++Y   ++  +           + E    + F        
Sbjct: 59  -------------FKETGHVNAYFPLLIPKS---------YLSREAEHVEGFAKECAVVT 96

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIF 185
           +      +             GV+      +++      T E     +Y     SY  + 
Sbjct: 97  HYRLKNAEDGS----------GVIVDPAAKLEEELIIRPTSETIIWSTYKNWINSYRDLP 146

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                 +  MR E        + EF+      E     +          +        + 
Sbjct: 147 ILCNQWANVMRWEMRTRLFLRTAEFLWQ----EGHTAHATREEAEAEAQKMLHVYGDFAE 202

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +         + ++     L     E      + ++ G   + G  ++   +  F   
Sbjct: 203 KYMAVPVIKGVKSANERFAGALDTYTIEGLMQDGKALQCGTSHFLGQNFAKAFNVQFVDK 262

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCR 362
           + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+      
Sbjct: 263 NNKLDYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEMLKKID 321

Query: 363 DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              E I  +L  +G  V +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R
Sbjct: 322 AKVEGIVNKLKAMGISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRR 381

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            T  +E  S + +  Y      + +
Sbjct: 382 DTLEKETRSCDGIEEYVQQLLEDIQ 406


>gi|42779590|ref|NP_976837.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|81411119|sp|Q73E50|SYP2_BACC1 RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|42735506|gb|AAS39445.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 476

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-SARMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQEHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +++E++          
Sbjct: 364 DTKEKEFIAMEQLEERIPALLEE 386


>gi|237716484|ref|ZP_04546965.1| prolyl-tRNA synthetase [Bacteroides sp. D1]
 gi|255691705|ref|ZP_05415380.1| proline--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|262408082|ref|ZP_06084630.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294809476|ref|ZP_06768179.1| proline--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|298484158|ref|ZP_07002324.1| proline--tRNA ligase [Bacteroides sp. D22]
 gi|299145587|ref|ZP_07038655.1| proline--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|229444131|gb|EEO49922.1| prolyl-tRNA synthetase [Bacteroides sp. D1]
 gi|260622644|gb|EEX45515.1| proline--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|262354890|gb|EEZ03982.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294443294|gb|EFG12058.1| proline--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295084169|emb|CBK65692.1| prolyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
 gi|298269662|gb|EFI11257.1| proline--tRNA ligase [Bacteroides sp. D22]
 gi|298516078|gb|EFI39959.1| proline--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 497

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/431 (15%), Positives = 153/431 (35%), Gaps = 49/431 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q + +G     P G    + +   + +                    + E+
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FKET 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------FLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E    ++Y     SY  +       +   R E    
Sbjct: 108 ----GVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF  L   G T     ++  +  I   N   +      ++        A     
Sbjct: 164 LFLRTAEF--LWQEGHTAHATREEAEEEAIRMLNVYGEFAEKYMAVPVVKGVKSANERFA 221

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                +    E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 222 GALDTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYV 398

Query: 439 SHRFSNNRPVL 449
            +     +  +
Sbjct: 399 QNLLEEMQANI 409


>gi|145529349|ref|XP_001450463.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418074|emb|CAK83066.1| unnamed protein product [Paramecium tetraurelia]
          Length = 930

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 110/358 (30%), Gaps = 27/358 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L    +  ++  +  H+ + +     + HQ S G   + P G    + +   +R +
Sbjct: 311 SKKLLDEYVKIQKELALRDHRNVGKKQNLYLFHQLSPGSAFFYPSGAHIYNTLMNFLRRQ 370

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + +A LW  SG YD Y + +  +    +      P +      +F  
Sbjct: 371 YYIRGYQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGEYGLKPMNCPGHCLMFDM 430

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  F    +  R+E+     G+ R R F   DA+ F    +  +        
Sbjct: 431 IQHSYRDLPVRFADFGVLHRNEVHGALSGLTRVRRFQQDDAHIF-CRMDQIQEEIKSCLD 489

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G +   +   + P     + E    A+    Q            P +    
Sbjct: 490 FLSYIYSLFGFEF-KLYLSTRPEKFLGTKEVWDNAEYQLEQGLKKFGKPFEVNPGDG--- 545

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + KL+D+     +     ++      F  +Y     
Sbjct: 546 -----------------AFYGPKIDVKLYDAYKREHQCGTIQLDFNLPERFNLQYRASED 588

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                 D +  + +        + VV        D   I      +  + +   ++  
Sbjct: 589 VQEVQQDKEQLHNEQVQAAQEIIDVVRKA-SHHSDTDNITTAPQNSQQQPAEDPVQEK 645



 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G    V +    +G++  + AV+     GK   WP  ++P ++ L  +       +D  E
Sbjct: 714 GFARPVIVHRAILGSLERMIAVLTEQCGGK---WPFWLSPKQLVLCPV---SAYYKDVAE 767

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           KI ARL   G  V  D+  + +  +   A +  F    ++G + V    ++++ 
Sbjct: 768 KIAARLRLEGYTVTTDEADQTLAKKVRNAQIQYFNFVGVIGEEEVKAGVIDVRD 821


>gi|237720697|ref|ZP_04551178.1| prolyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293373969|ref|ZP_06620310.1| proline--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|229449532|gb|EEO55323.1| prolyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292631045|gb|EFF49682.1| proline--tRNA ligase [Bacteroides ovatus SD CMC 3f]
          Length = 497

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/431 (15%), Positives = 153/431 (35%), Gaps = 49/431 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q + +G     P G    + +   + +                    + E+
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FKET 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------FLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E    ++Y     SY  +       +   R E    
Sbjct: 108 ----GVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF  L   G T     ++  +  I   N   +      ++        A     
Sbjct: 164 LFLRTAEF--LWQEGHTAHATREEAEEEAIRMLNVYGEFAEKYMAVPVVKGVKSANERFA 221

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                +    E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 222 GALDTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYV 398

Query: 439 SHRFSNNRPVL 449
            +     +  +
Sbjct: 399 QNLLEEMQANI 409


>gi|300771911|ref|ZP_07081782.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761297|gb|EFK58122.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 490

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/431 (15%), Positives = 144/431 (33%), Gaps = 50/431 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +    + +G     P G    + + AI+ +    TG      P       + + 
Sbjct: 19  LVIKADLAEYSAVRGCMVIKPYGYAIWERMQAILDKMFKDTGHSNAYFPLFIPKSFFSK- 77

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                                      E    + F +              +   +R + 
Sbjct: 78  ---------------------------EASHVEGFATECA-----------VVTHYRLKN 99

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                ++   +  +++      T E    ++Y     SY  +   +   +  +R E    
Sbjct: 100 DGAGNIIVDEDAKLEEELIVRPTSETIIWNTYRGWIESYRDLPILVNQWANVVRWEMRTR 159

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+      E     +          +        + N +           ++ 
Sbjct: 160 LFLRTAEFLWQ----EGHTAHATSQEAIEETEKMLGVYAHFAENYLAVPVVRGRKTENER 215

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   +GK  +V   S+G+ + 
Sbjct: 216 FAGALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEHVWASSWGV-ST 274

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDV 379
           R++ A+I +  D +G++ P  +AP ++ ++ I   D+         + + A L      V
Sbjct: 275 RLMGALIMAHSDDQGLVLPPMLAPVQVVIVPIYRTDEEKTNIDVFVDGLSAELKAKNISV 334

Query: 380 FWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +DD   ++ G +FA  +L G PL+V VG++ + +  VE+  R T  +E +S E +    
Sbjct: 335 KYDDRDTQRPGFKFAEWELKGVPLRVAVGARDMQNGTVELARRDTQTKETVSQEGLSALI 394

Query: 439 SHRFSNNRPVL 449
                  +  +
Sbjct: 395 EGLLDTIQENI 405


>gi|217031454|ref|ZP_03436959.1| hypothetical protein HPB128_21g12 [Helicobacter pylori B128]
 gi|216946654|gb|EEC25250.1| hypothetical protein HPB128_21g12 [Helicobacter pylori B128]
          Length = 517

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/171 (41%), Positives = 95/171 (55%)

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR +   +  PT EE +T+I  +
Sbjct: 1   MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKNNDFVLSPTLEENITEIAAN 60

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 61  FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 120

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+     
Sbjct: 121 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNCDYAA 171



 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 87/181 (48%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 337 ESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCYGIGISRL 396

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 397 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDR 456

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G++    +L+G  L +IVG + + + + E   R    ++ +   E+        ++
Sbjct: 457 DARFGAKMRDFELIGERLALIVGKQTLENKEFECVKRANLEKQTIKDIELEEKILEILAS 516

Query: 445 N 445
            
Sbjct: 517 E 517


>gi|20093982|ref|NP_613829.1| threonyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|22654113|sp|Q8TXW5|SYT_METKA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19886944|gb|AAM01759.1| Threonyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 624

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 145/434 (33%), Gaps = 44/434 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +E     E  +H  ++R   I  H      G   W P G      +   +       GA 
Sbjct: 187 EERETGDEEPAHVKLMREKEICDHEPAADVGHVRWYPKGHVVRRCLAEYVENLMADLGAA 246

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +  P +            D +G+   R+   N +A++           +      S R+
Sbjct: 247 VVETPVMYDLSEDAIREHADKFGERQYRIRAGN-RALMLRYAACFGAFRLLADTTLSRRH 305

Query: 128 LPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP   Y++   FR E      G+ R R F M D ++     + +   + +     L +  
Sbjct: 306 LPLKIYELSQSFRLEQSGEVVGLKRLRAFTMPDLHTVCADMDEAVEEFLEQAKLCLEVGL 365

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LGL+   +   +     +       LA+  E     +K  +   +P     ++  +   
Sbjct: 366 DLGLEYEVVFRTTEKFLKERKEVLEELAEAMEKAYGDAKPVLVEVLPERKHYWECKVDFA 425

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            I                    DSL          I+V     FG         T+    
Sbjct: 426 FI--------------------DSLGRPIENPTVQIDVESGRRFG--------ITYADES 457

Query: 307 G-KDHYVQMGSYGIGA-MRVVAAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQ 359
           G + H V +     G+  RV+ A++E  +     +GK    P  ++P +  +I +    +
Sbjct: 458 GDERHPVILHCSPTGSLERVICAILEGQYKRFEQEGKLPTLPTWLSPVQARVIPV---SE 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK++  L   G  V  DD  E +G +   A     P  +++G + V    + + 
Sbjct: 515 KVLEEAEKVFEELKSEGFRVDLDDRDEPVGRKIRDAGEEWVPYVIVIGEEEVKKGTLSVT 574

Query: 420 HRLTGIREDMSLEE 433
            R     ++   EE
Sbjct: 575 IREESTLKEQRREE 588


>gi|317136752|ref|XP_001727256.2| prolyl-tRNA synthetase YHR020W [Aspergillus oryzae RIB40]
          Length = 603

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 141/447 (31%), Gaps = 76/447 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G +   P      + +         + G    S P   S D L 
Sbjct: 104 QQVLTKGDMLDYYDVSGCFILKPASYFIWEEIQDWFNARIKKIGVKNCSFPLFVSEDVLN 163

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 REKDHIEGFAAEVAWVTHAGSSPLEKKIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT +G+      +   Y +I+    L ++P+ 
Sbjct: 224 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTKDGAHDEVMHILDLYAQIYEE--LLAVPV- 280

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCS---KDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          V     E + F        ++  IP+         S         
Sbjct: 281 ---------------VKGQKTEKEKFAGGLYTTTVEGYIPATGRGIQGGTSHGLGQNFSK 325

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                  D   +      P             H++                         
Sbjct: 326 MFNITVEDPSTKPDEKKPPL------------HVWQ------------------------ 349

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-- 371
             S+G+ + R +  ++    D +G++ P  VA  +  ++ +    +   +  EK+YA   
Sbjct: 350 -NSWGL-STRTLGVMVMIHSDNRGLVLPPRVADTQTVIVPVGITAKTSDEEREKLYAEID 407

Query: 372 -----LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--- 422
                L+  G     D   G   G +F   +L G PL++  G        V    R    
Sbjct: 408 GLINILTGAGVRAISDKREGYSPGWKFNDWELRGVPLRIEFGPGESVGQFVTAARRDIPG 467

Query: 423 TGIREDMSLEEVINYASHRFSNNRPVL 449
              +  + + E+           +  L
Sbjct: 468 KDGKSSIQISELSTAVPALLEQIQKDL 494


>gi|288574387|ref|ZP_06392744.1| prolyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570128|gb|EFC91685.1| prolyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 480

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 159/459 (34%), Gaps = 89/459 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L +++     AE+A +  +    +I           P G    + +  +       
Sbjct: 13  SQWYLDVIKV----AELADYAPVRGCMVIR----------PTGYSVWEEIQQVFDRAFKE 58

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
           TG +    P L  +  L  E+   + +  E   +     +  ++ ++  PT E V+  ++
Sbjct: 59  TGHVNAYFPVLIPSSFLEKEAEHVEGFSPECAVVTHAGGEELEEPLVVRPTSETVIGHMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              I+S+R+LP    Q     R E RPR   +R+ EFL ++ ++   + E +     +M 
Sbjct: 119 SKWIQSWRDLPLLINQWANVMRWEKRPRL-FLRTSEFLWQEGHTAHASKEEAIEETERML 177

Query: 179 VSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             Y RI    L L  +P        G     E    A+  ET    +       + +  +
Sbjct: 178 EVYRRIMTDYLALPVVP--------GVKSEGERFPGAE--ETYTTETMMSDMKALQAGTS 227

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F        + + ++  +        E +  +   +  VS R                 
Sbjct: 228 HF--------LGQNFSKAFNIQFQNKKEAMEYAWTTSWGVSTR----------------- 262

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                                     ++ AVI +  D  G+I P  +AP K++L+ I   
Sbjct: 263 --------------------------LIGAVIMTHSDDDGLILPPRIAPTKVALLPISKD 296

Query: 358 DQVC----RDACEKIYARLSKVGCD--VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKF 410
           + +          ++  ++  V  D  +  DD    + G +F      G PL++ +G K 
Sbjct: 297 ETMATGPLLSKARELAGKIESVIGDRTIVVDDQFHMRPGDRFFYHLQKGVPLRLELGEKE 356

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
                V    R TG + D+  + +           +  L
Sbjct: 357 FEKGTVRAVRRDTGEKIDLPWDGIETKVHELLETIQEDL 395


>gi|223995497|ref|XP_002287422.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976538|gb|EED94865.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 517

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 146/425 (34%), Gaps = 89/425 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    D +   +       GA     P L        E+   D + KE   +
Sbjct: 43  GCMVIKPWGMSIWDQIRNDLDARIKEHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVV 102

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                  +  +I  PT E ++ ++F+  I S+R+LP    Q   
Sbjct: 103 THHRLTVDPSGEGGLIADPEAELEDPLIIRPTSETMIWNMFKKWIVSHRDLPLKMNQWAN 162

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R   +R+ EFL ++ ++   T EG+      M   Y  +     L +IP+  
Sbjct: 163 VMRWEMRTR-PFLRTSEFLWQEGHTAHATSEGALEDSKLMLDQYAEMCQ--NLLAIPVIK 219

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                G     E    A+  ET    +     + + S  + F                  
Sbjct: 220 -----GAKSPSERFAGAE--ETFTIEALMQNGWALQSGTSHF------------------ 254

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                            G  +      TF+ A+GK   V   S+
Sbjct: 255 --------------------------------LGQSFGKAFDVTFQDAEGKQQDVWGTSW 282

Query: 318 GIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQV----CRDACEKIYAR 371
           G+ + R++ A+I +  D  G++     +     +  I  K +D+       +A +K+ A 
Sbjct: 283 GV-STRLIGALIMTHSDDAGLVLPPRVAPVQVVVVPIPPKKNDEEGKVALNNALDKMVAN 341

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDM 429
           L   G  V  DD    + G+++   +  G PL++ +G + V       K+R     +E +
Sbjct: 342 LKSAGLKVKVDDRDYVRNGAKYFEWERKGVPLRIELGPRDVKGGVCVFKYRVGKEEKETV 401

Query: 430 SLEEV 434
           SL+EV
Sbjct: 402 SLDEV 406


>gi|301052111|ref|YP_003790322.1| prolyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300374280|gb|ADK03184.1| prolyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 476

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCVRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|260170261|ref|ZP_05756673.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315918623|ref|ZP_07914863.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313692498|gb|EFS29333.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 497

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 152/429 (35%), Gaps = 49/429 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q + +G     P G    + +   + +                    + E+
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FKET 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------FLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E    ++Y     SY  +       +   R E    
Sbjct: 108 ----GVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF  L   G T     ++  +  I   N   +      ++        A     
Sbjct: 164 LFLRTAEF--LWQEGHTAHATREEAEEEAIRMLNVYGEFAEKYMAVPVVKGVKSANERFA 221

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                +    E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 222 GALDTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYV 398

Query: 439 SHRFSNNRP 447
            +     + 
Sbjct: 399 QNLLEEMQA 407


>gi|289524208|ref|ZP_06441062.1| proline--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502864|gb|EFD24028.1| proline--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 481

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 155/458 (33%), Gaps = 87/458 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L +++     AE+A +  +    +I           P G    +++ + + E    
Sbjct: 15  SQWYLDVIKA----AEMADYAPVRGCMVIR----------PTGYAIWESIQSQLDERFKE 60

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
           TG +    P L  +  L  E+   + +  E   +     +  ++ ++  PT E V+  ++
Sbjct: 61  TGHVNAYFPLLIPSSFLEKEAKHVEGFSPECAVVTYAGGEELEEPLVIRPTSETVIGHMY 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              I+S+R+LP    Q     R E        R R FL   +         +  +  +  
Sbjct: 121 SKWIQSWRDLPILINQWCNVLRWEK-------RPRLFLRT-SEFLWQEGHTAHATREEAL 172

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              LR+                 +      E + L       V   +       P     
Sbjct: 173 EETLRMLE---------------VYRSFMEEVLALP------VLTGEKSEGERFPGAENT 211

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           +                                 E      R ++ G   + G  ++   
Sbjct: 212 YT-------------------------------CEAMMTDKRALQAGTSHFLGQNFAKAF 240

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F+  DG+  Y    S+G+ + R++ A+I +  D  G++ P +VAP K  ++ I    
Sbjct: 241 DIRFQNKDGELEYAWTTSWGV-STRLIGAIIMTHADNDGLVLPPNVAPVKTVILPITPDQ 299

Query: 359 ----QVCRDACEKIYARLSK-VGC-DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFV 411
               +      +KI  RL K +G   V  D     + G +F      G PL++ +G   +
Sbjct: 300 NLLQEKILPEAQKILERLKKILGANRVILDTQFHMRPGDRFFYHLQKGVPLRLELGEAEM 359

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             S +    R TG   ++S + +         N +  L
Sbjct: 360 KSSHLRAVRRDTGEVVNISFDAIEREVPRLLENIQNTL 397


>gi|160882791|ref|ZP_02063794.1| hypothetical protein BACOVA_00752 [Bacteroides ovatus ATCC 8483]
 gi|156111815|gb|EDO13560.1| hypothetical protein BACOVA_00752 [Bacteroides ovatus ATCC 8483]
          Length = 497

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 152/429 (35%), Gaps = 49/429 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q + +G     P G    + +   + +                    + E+
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FKET 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------FLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E    ++Y     SY  +       +   R E    
Sbjct: 108 ----GVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF  L   G T     ++  +  I   N   +      ++        A     
Sbjct: 164 LFLRTAEF--LWQEGHTAHATREEAEEEAIRMLNVYGEFAEKYMAVPVVKGVKSANERFA 221

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                +    E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 222 GALDTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYV 398

Query: 439 SHRFSNNRP 447
            +     + 
Sbjct: 399 QNLLEEMQA 407


>gi|51978320|gb|AAU19870.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 502

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 87  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 121 -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 162

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 163 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 215

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 216 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 271

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 272 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHGDNNGLVMPPKVAPVQVVIVPIAQHKEGV 330

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 331 LAKAIELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 389

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 390 DTKEKEFISMDQLEERIPALLEE 412


>gi|238488527|ref|XP_002375501.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220697889|gb|EED54229.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 603

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 141/447 (31%), Gaps = 76/447 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G +   P      + +         + G    S P   S D L 
Sbjct: 104 QQVLTKGDMLDYYDVSGCFILKPASYFIWEEIQEWFNARIKKIGVKNCSFPLFVSEDVLN 163

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 REKDHIEGFAAEVAWVTHAGSSPLEKKIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT +G+      +   Y +I+    L ++P+ 
Sbjct: 224 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTKDGAHDEVMHILDLYAQIYEE--LLAVPV- 280

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCS---KDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          V     E + F        ++  IP+         S         
Sbjct: 281 ---------------VKGQKTEKEKFAGGLYTTTVEGYIPATGRGIQGGTSHGLGQNFSK 325

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                  D   +      P             H++                         
Sbjct: 326 MFNITVEDPSTKPDEKKPPL------------HVWQ------------------------ 349

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-- 371
             S+G+ + R +  ++    D +G++ P  VA  +  ++ +    +   +  EK+YA   
Sbjct: 350 -NSWGL-STRTLGVMVMIHSDNRGLVLPPRVADTQTVIVPVGITAKTSDEEREKLYAEID 407

Query: 372 -----LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--- 422
                L+  G     D   G   G +F   +L G PL++  G        V    R    
Sbjct: 408 GLVNILTGAGVRAISDKREGYSPGWKFNDWELRGVPLRIEFGPGESVGQFVTAARRDIPG 467

Query: 423 TGIREDMSLEEVINYASHRFSNNRPVL 449
              +  + + E+           +  L
Sbjct: 468 KDGKSSIQISELSTAVPALLEQIQKDL 494


>gi|118415374|gb|ABK83793.1| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
          Length = 502

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D 
Sbjct: 246 MHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDN 304

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F   
Sbjct: 305 NGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKFNEY 363

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 364 EMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 412



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 68/191 (35%), Gaps = 16/191 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 37  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 86

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTD 116
             T    + +P      L   E    + +  E+  +    D+     +   PT E +  +
Sbjct: 87  KATSHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCVRPTSETLFCE 146

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E +     +R+ EFL ++ ++   T E S+     
Sbjct: 147 HFSKIVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETAEESQAETLN 205

Query: 177 MFVSYLRIFHR 187
           +   Y      
Sbjct: 206 ILNLYASFCED 216


>gi|327541683|gb|EGF28207.1| prolyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 501

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/452 (15%), Positives = 145/452 (32%), Gaps = 86/452 (19%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-L 79
           ++ ++R   + ++S   G     P G +  +NV   + +    TG      P       L
Sbjct: 21  YQQVIRAADLAENSPVRGCMVIKPWGYQLWENVQRALDDMFKATGHQNAYFPLFIPMSFL 80

Query: 80  WVESGRYDSYGKEMLRLADRN---------------DKAMIYGPTHEEVMTDIFRSHIKS 124
             E+   + + KE   +                   ++ +I  PT E ++   +   ++S
Sbjct: 81  EKEAEHVEGFAKECAVVTHHRLEPDPDGGLRPAGKLEEPLIVRPTSETIIGATYAKWVQS 140

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E       MR+R FL    + +                     
Sbjct: 141 YRDLPILINQWANVVRWE-------MRTRMFLRTAEFLWQ-------------------- 173

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                   E   +  T E  V  ++  ++        DF +   
Sbjct: 174 ------------------------EGHTVHATSEEAVEETEKMVEVY-----RDFAENWM 204

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++     P             +++ +++    + ++ G   + G  +S      F+ 
Sbjct: 205 AMPVIVGSKTPLERFPGAVETLSIEAMMQDR----KALQAGTSHFLGQNFSKAQEIKFQS 260

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--DQVCR 362
             G   +    S+G+ + R++ A+I +  D  G++ P  +AP  + +  I          
Sbjct: 261 ESGDIEFAWTTSWGV-STRLIGALIMTHSDDDGLVLPPRLAPTHVVIQPIYKDGSRAEVM 319

Query: 363 DACEKIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +  + +   L+          V  DD   + G +       G P+++ VG K ++   V 
Sbjct: 320 EYVQSLRDELAAQTYANAPVRVTIDDRDIRGGEKKWYHVKRGVPIRLEVGPKDIAAGTVF 379

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              R       +   E++     + +  +  L
Sbjct: 380 CGIRNQPKSVGIDRAELVATIGEKLATLQQEL 411


>gi|307178487|gb|EFN67176.1| Bifunctional aminoacyl-tRNA synthetase [Camponotus floridanus]
          Length = 1504

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 136/440 (30%), Gaps = 76/440 (17%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
            +++ ++GMI  +   G Y   P        +   I +E    G  E   P  +    L  
Sbjct: 1016 QVITKSGMIEYYDVSGCYILRPWSFAIWKIIKEYIDKEITALGVQECYFPIFVTRGVLEK 1075

Query: 82   ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +    +    + +   PT E VM   +   ++S   LP    Q   
Sbjct: 1076 EKTHITDFAPEVAWVTKCGESDLAEPVAIRPTSETVMYPAYAKWLRSDTELPLRLNQWNN 1135

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E               KD   F  T E                    G  +   +A
Sbjct: 1136 VVRWE--------------FKDPKPFLRTREFLWQE---------------GHSAFATKA 1166

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            E+         E +++ D                I    T+ +     +           
Sbjct: 1167 EAD-------EEVLIILDI--YAKVYEDLLAVPVIKGRKTEKEKFPGGDYTTTVEAFIST 1217

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYV-QMG 315
                                S R I+     + G  +S   +   +G A+G +       
Sbjct: 1218 --------------------SGRAIQGATSHHLGQNFSKMFNIQVEGIAEGDEKTFVYQN 1257

Query: 316  SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKI 368
            S+G+   R +  +I    D KG++ P  +A  +  +I             ++ +  C K+
Sbjct: 1258 SWGLT-TRTIGVMIMVHGDDKGLVLPPCIASIQGIVIPCGITANMSTIEKELLQSECVKL 1316

Query: 369  YARLSKV-GCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
               LSKV    V  D    +  G +F   +L G P+++ +G K +  ++V    R    R
Sbjct: 1317 VDELSKVSKFRVKGDFRNNRTPGWKFNHWELKGVPVRIELGPKDMKKNQVTFVRRDNLQR 1376

Query: 427  EDMSLEEVINYASHRFSNNR 446
              ++ + V         + +
Sbjct: 1377 TTVNRDTVAASLDCLLKDIQ 1396


>gi|228931896|ref|ZP_04094792.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827876|gb|EEM73614.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 476

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|218901598|ref|YP_002449432.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228925648|ref|ZP_04088737.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120054|ref|ZP_04249309.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|218539056|gb|ACK91454.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228663520|gb|EEL19105.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|228834126|gb|EEM79674.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 476

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|302497924|ref|XP_003010961.1| hypothetical protein ARB_02859 [Arthroderma benhamiae CBS 112371]
 gi|291174507|gb|EFE30321.1| hypothetical protein ARB_02859 [Arthroderma benhamiae CBS 112371]
          Length = 581

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 106/192 (55%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +SGR      E+ R  
Sbjct: 27  GVFHLLPLGLRVQEKLERLIDKHMRKLSASKLSLSSLSSQALWKKSGRLHDDDSEVFRFV 86

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           DR     +  PTHEE +T +    IKSYR+LP   YQI  K+RDE RPR G++R REF+M
Sbjct: 87  DRKKTPFLLAPTHEEEITTVVSGLIKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVM 146

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           KD Y+FD T   +  +YN +  +Y+ +F  L L  +   A SG +GG+LSHEF   +  G
Sbjct: 147 KDLYTFDSTEAEAIKTYNTVKEAYISLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKG 206

Query: 218 ETQVFCSKDFMD 229
           E  +        
Sbjct: 207 EDTIVSCSKCEY 218



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 14/195 (7%)

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK---------GADGK--DHY 311
                  +         + IE+ H F+ GT+YS  + A            G  GK     
Sbjct: 387 RPGDECPNCGNPALKIDQSIELAHTFHLGTRYSEVLQANISINPAILTGAGQKGKQEPVP 446

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           +QMG +GIG  R+++AV +   D KG+ WP ++APF+++++      +   +    I  +
Sbjct: 447 IQMGCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVAVVP-GKGLEKEGELVYDIVTQ 505

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDM 429
            ++   D   DD  +    +   AD++G+P+ + VG     + +KVE++ R  G  R  +
Sbjct: 506 KTQQPIDTILDDRKKDFAWKLRDADIIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKV 565

Query: 430 SLEEVINYASHRFSN 444
           SLEEV  + S   S 
Sbjct: 566 SLEEVPEFVSSLLSK 580


>gi|303284080|ref|XP_003061331.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457682|gb|EEH54981.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 489

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/464 (16%), Positives = 151/464 (32%), Gaps = 83/464 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L +++E     E+A +     T +I           P G    + +   +  +  
Sbjct: 8   FSRWYLDVIRE----CELADYGPARGTMVIR----------PYGYALWEGIQRWMDAKFK 53

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
            TG      P L        E+   + +  E+  +        ++ ++  PT E ++  +
Sbjct: 54  TTGVENAYFPQLIPYSFITKEASHVEGFSPELAVVTQGGGKTLEEPLVVRPTSETIVNHM 113

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    +M
Sbjct: 114 FSQWIQSYRDLPLLMNQWANVHRWEMRTR-PFIRTLEFLWQEGHTAHATAEEAEERAVQM 172

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y             + A    +G     E    A+              + I +   
Sbjct: 173 IDVYREFAED-------VAAMPVIVGRKSRVETFAGANNT------------YTIEAMMG 213

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + +  S         A  +   +E                  +G I          
Sbjct: 214 DKRALQAGTSHNLGQNFAKAFDTTFLDENGKTQHVHQSSWGVSTRLIGGI---------- 263

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG-KGIIWPDSVAPFKISLINI-- 354
                           M       +R V       + G      P ++AP ++ ++ I  
Sbjct: 264 ---------------IMTHGDDVGLRRV------LYTGPHTTALPPALAPIQVVVVPIAQ 302

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                +    A   +   L+  G  V  DD       G +FA  ++ G P++V +G K V
Sbjct: 303 KNKDKESVNAAASAVVKTLTDAGVRVKLDDDERN-SPGWKFAQWEMKGVPIRVEIGPKDV 361

Query: 412 SDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPVL 449
           ++    +  R      G    +S+E   ++       ++ +  L
Sbjct: 362 ANDACVLARRDKPGKEGKEFGVSVEPSALVGKVRETLADVQSAL 405


>gi|91226476|ref|ZP_01261225.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91189108|gb|EAS75389.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 410

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 6/187 (3%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   IR +
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P +    LW  SG +D Y   M   +  N +     P +      IF  
Sbjct: 286 LDEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQIFNQ 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +        
Sbjct: 345 GLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIF-CTESQIQEEVTNCIK 403

Query: 180 SYLRIFH 186
                + 
Sbjct: 404 MVYDTYQ 410


>gi|228944201|ref|ZP_04106580.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228815590|gb|EEM61832.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 476

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKELISMDQLEERIPALLEE 386


>gi|239614077|gb|EEQ91064.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
 gi|327353430|gb|EGE82287.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 607

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 138/434 (31%), Gaps = 81/434 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +      +  + G    S P   S D L 
Sbjct: 109 QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQEWFNNKIKKMGVKNCSFPLFVSEDVLK 168

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 169 KEKDHIEGFAAEVAWVTHAGNSALERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 228

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +          FL    + +                                 
Sbjct: 229 SVVRWEFKNPQP------FLRTREFLWQE------------------------------- 251

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                  G  +H    L + G  +           +      ++D++++  I  Q T   
Sbjct: 252 -------GHTAH----LTEAGAREEVLQILEHYAHV------YEDLLAIPVIRGQKTDKE 294

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------ 310
                ++   +   +P     + RGI+ G     G  +S     T +    K        
Sbjct: 295 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHCLGQNFSKMFGITVEDPSAKPEEKKPAL 350

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
           +V   S+G+ + R +  ++    D +G++ P  VA  +  ++ +        A       
Sbjct: 351 HVWQNSWGL-STRTIGIMVMVHGDDRGLVIPPRVADIQTVIVPVGTGARTTEAEKTALMA 409

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
             + + A L  VG  V  D      G +F   +L G PL++  G    +   V    R  
Sbjct: 410 EIDALAAVLQAVGVRVEVDKRDYTPGWKFNDWELHGVPLRLEFGPGESAGHYVTASRRDI 469

Query: 423 --TGIREDMSLEEV 434
                +  + + E+
Sbjct: 470 LGKDGKSTIPITEL 483


>gi|301320495|gb|ADK69138.1| proline--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 474

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 147/415 (35%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIEGFSPEIAT 94

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      + ++ +   PT E VM D F + I SYR+LP  + Q     R E         
Sbjct: 95  VTRVGQKKLEENLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL         T E      + +  SY        LK + +                
Sbjct: 148 TRPFLR--------TSEFLWQEGHTVHSSYNEA-ENFCLKILNIY--------------- 183

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   + F  +  +   I  + T+ +                A  +      +FD  
Sbjct: 184 --------EKFAKEILLLPVICGKKTEKEKFAG------------AKDTYTIESLMFDGQ 223

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +
Sbjct: 224 ---------ALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMT 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  ++P +   I    + +      E I  +LS    DV  D+  +  G +
Sbjct: 274 HSDDNGLVLPSKISPIQ-IQIIQIKNTEQIDQVVENIKDKLSDYRIDV--DNSDKSFGFK 330

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
            + A++ G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 331 ISEAEIKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|261204761|ref|XP_002629594.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239587379|gb|EEQ70022.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 606

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 138/434 (31%), Gaps = 81/434 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +      +  + G    S P   S D L 
Sbjct: 109 QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQEWFNNKIKKMGVKNCSFPLFVSEDVLK 168

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 169 KEKDHIEGFAAEVAWVTHAGNSALERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 228

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +          FL    + +                                 
Sbjct: 229 SVVRWEFKNPQP------FLRTREFLWQE------------------------------- 251

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                  G  +H    L + G  +           +      ++D++++  I  Q T   
Sbjct: 252 -------GHTAH----LTEAGAREEVLQILEHYAHV------YEDLLAIPVIRGQKTDKE 294

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------ 310
                ++   +   +P     + RGI+ G     G  +S     T +    K        
Sbjct: 295 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHCLGQNFSKMFGITVEDPSAKPEEKKPAL 350

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
           +V   S+G+ + R +  ++    D +G++ P  VA  +  ++ +        A       
Sbjct: 351 HVWQNSWGL-STRTIGIMVMVHGDDRGLVIPPRVADIQTVIVPVGTGAKTTEAEKTALMA 409

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
             + + A L  VG  V  D      G +F   +L G PL++  G    +   V    R  
Sbjct: 410 EIDALAAVLQAVGVRVEVDKRDYTPGWKFNDWELHGVPLRLEFGPGESAGHYVTASRRDI 469

Query: 423 --TGIREDMSLEEV 434
                +  + + E+
Sbjct: 470 LGKDGKSTIPITEL 483


>gi|162382786|ref|YP_893300.2| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|225862437|ref|YP_002747815.1| prolyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|229182781|ref|ZP_04310021.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
 gi|152074740|sp|A0R9A0|SYP2_BACAH RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|225785886|gb|ACO26103.1| proline--tRNA ligase [Bacillus cereus 03BB102]
 gi|228600754|gb|EEK58334.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
          Length = 476

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D 
Sbjct: 220 MHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDN 278

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F   
Sbjct: 279 NGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKFNEY 337

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 338 EMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 68/191 (35%), Gaps = 16/191 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTD 116
             T    + +P      L   E    + +  E+  +    D+     +   PT E +  +
Sbjct: 61  KATSHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTHGGDEKLAERLCVRPTSETLFCE 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F   ++SY +LP  + Q     R E +     +R+ EFL ++ ++   T E S+     
Sbjct: 121 HFSKIVQSYNDLPKLYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTIHETAEESQAETLN 179

Query: 177 MFVSYLRIFHR 187
           +   Y      
Sbjct: 180 ILNLYASFCED 190


>gi|196045229|ref|ZP_03112461.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196023813|gb|EDX62488.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
          Length = 476

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +   + Y   M        K       H E         
Sbjct: 61  -------------------KATSHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F   +GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKATELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|324324493|gb|ADY19753.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 476

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|160941555|ref|ZP_02088887.1| hypothetical protein CLOBOL_06453 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435520|gb|EDP13287.1| hypothetical protein CLOBOL_06453 [Clostridium bolteae ATCC
           BAA-613]
          Length = 479

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 1/167 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FG  ++      F   D    YV   S+G+ + R++ A+I    D 
Sbjct: 222 MHDGKALQSGTSHNFGDGFAKAFDIQFTDKDNTLKYVHQTSWGV-STRIIGAIIMVHGDD 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP +I ++ ++   +   D   ++  RL+K G  V  DD  +  G +FA  
Sbjct: 281 NGLVLPPRIAPVQIMVVPVQQQKEGVLDKAYELKERLTKAGYAVKVDDTDKSPGWKFADC 340

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++ G PL+V +G K +  ++  +  R    +  +SL+E+   A    
Sbjct: 341 EMRGVPLRVEIGPKDIEKNQAVLVRRDNHEKSFVSLDELEARAGEML 387


>gi|161763540|ref|YP_081979.2| prolyl-tRNA synthetase [Bacillus cereus E33L]
 gi|114152167|sp|Q63GI2|SYP2_BACCZ RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
          Length = 476

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHGDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLEERIPALLEE 386


>gi|42560874|ref|NP_975325.1| prolyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|81829401|sp|Q6MTR9|SYP_MYCMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42492371|emb|CAE76967.1| proline-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 474

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 147/415 (35%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIEGFSPEIAT 94

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      + ++ +   PT E VM D F + I SYR+LP  + Q     R E         
Sbjct: 95  VTRVGQKKLEENLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL         T E      + +  SY        LK + +                
Sbjct: 148 TRPFLR--------TSEFLWQEGHTIHSSYNEA-ENFCLKILNIY--------------- 183

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   + F  +  +   I  + T+ +                A  +      +FD  
Sbjct: 184 --------EKFAKEILLLPVICGKKTEKEKFAG------------AKDTYTIESLMFDGQ 223

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +
Sbjct: 224 ---------ALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMT 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  ++P +   I    + +      E I  +LS    DV  D+  +  G +
Sbjct: 274 HSDDNGLVLPSKISPIQ-IQIIQIKNTEQIDQVVENIKDKLSDYRIDV--DNSDKSFGFK 330

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
            + A++ G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 331 ISEAEIKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|261200038|ref|XP_002626420.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239594628|gb|EEQ77209.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 555

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 105/186 (56%), Gaps = 1/186 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR +
Sbjct: 1   MLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKKDS-EFFKFQDRKE 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SYR+LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  ARFLLAPTHEEEITSLVAGAVNSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD +PE +  +Y+ +  +Y+R+F  L +  +   A+SG +GG LSHEF +    GE  +
Sbjct: 120 TFDYSPETAIKTYSAVKKAYIRLFDELRIPYMIATADSGNMGGSLSHEFHLPNPKGEDTI 179

Query: 222 FCSKDF 227
                 
Sbjct: 180 ISCSSC 185



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 99/194 (51%), Gaps = 21/194 (10%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-----KGADGKD--------HYV 312
                  E+   +   IE+ H F+ GT+YS  ++A+         DG            +
Sbjct: 363 DRCSKCGEHTVQTHTAIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPL 422

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +MG +GIG  R+++AV ++  D KG+ WP ++APF++ +I     D+      E++Y  +
Sbjct: 423 EMGCHGIGVSRMISAVADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDI 478

Query: 373 --SKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRED 428
              ++G  D   DD    I  +   ADL+G+P+ +++G  + +++K+E++  RL  +RE 
Sbjct: 479 NGRQIGAVDAIVDDRDRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRET 538

Query: 429 MSLEEVINYASHRF 442
           +SL+++  +     
Sbjct: 539 VSLQDLHPFTKSLL 552


>gi|189189606|ref|XP_001931142.1| prolyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972748|gb|EDU40247.1| prolyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 488

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 109/187 (58%), Gaps = 1/187 (0%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           +  + +  +I +  N  GA ++S+ ++ +  LW +SGRY S   E+LR+ DR +   +  
Sbjct: 8   RVQNKLEGLIDKHMNSIGASKVSLSSITTEALWRQSGRY-SANSELLRIKDRRETGFLLS 66

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PTHEE +T +  S + SY++LP   YQI  K+RDE RPR G++R++EF+MKD Y+FD +P
Sbjct: 67  PTHEEEITALVASMVHSYKDLPLRLYQIGRKYRDERRPRGGLLRAKEFMMKDLYTFDSSP 126

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + +  +Y  +  +Y  +F+ L L  +   A+SG +GG LSHE+   +  GE  +F  +  
Sbjct: 127 KAALETYESVRDAYNNLFNELKLPYLVADADSGNMGGKLSHEYHFASPKGEDYIFSCQSC 186

Query: 228 MDFPIPS 234
                  
Sbjct: 187 EYVVNEE 193



 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 7/184 (3%)

Query: 257 AATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYV 312
             + D+   K  D  P     K    + IEVGH F+ GT+YS+P++A     D      V
Sbjct: 295 TCSIDITLTKPGDPCPRCATGKLNIQKAIEVGHTFHLGTRYSVPLNAVIALRDQNLSSPV 354

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-ISLINIKAHDQVCRDACEKIYAR 371
            MG +GIG  R++ AV     D +G+ WP  +AP++ I L + K  ++   +  + +   
Sbjct: 355 HMGCHGIGVSRIIGAVASLLSDARGLNWPRVIAPYEAIVLSDPKTEEEDTTEVYDALRGE 414

Query: 372 LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                 D+  DD  G+ +G +   ADL+G+P+ V++G +   D KVEI+ R  G+++D+ 
Sbjct: 415 ERNPDIDLVLDDRAGKSLGWKLKDADLIGYPVVVVLG-RSWKDKKVEIQCRRLGVKKDVD 473

Query: 431 LEEV 434
           L+E+
Sbjct: 474 LKEL 477


>gi|240276126|gb|EER39638.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325090008|gb|EGC43318.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 555

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 1/193 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR  
Sbjct: 1   MLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKKDS-EFFKFQDRKK 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  ARFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG LSHEF +    GE  +
Sbjct: 120 TFDYNAEMAIKTYNAVKDTYVRLFDELRIPYIIATADSGNMGGSLSHEFHLPNPKGEDTI 179

Query: 222 FCSKDFMDFPIPS 234
                        
Sbjct: 180 ISCSSCRYVYNEE 192



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 21/181 (11%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQMGSY 317
             E    +   IE+ H F+ GT+YS  ++A+                       +QMG +
Sbjct: 368 CGEQAVQTHTAIELAHTFHLGTRYSKVLNASVAVPSTLLSNDSKANDNSSVSVPLQMGCH 427

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ +S  + KG+ WP ++APF+  +I     D+   +  EK+Y  +S++  
Sbjct: 428 GIGVSRMISAIADSLANSKGLNWPRAIAPFEAMIIP----DKGLEEEAEKVYDAISRINI 483

Query: 378 DV---FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEE 433
           D      DD  + +  +   ADL+G+P+ ++VG  +  +SK+E++ HRL  +RE +SL +
Sbjct: 484 DAVDAIIDDRDKNLAWKLRDADLIGYPVIIVVGKSWRMESKLEVQCHRLNNLRETVSLPD 543

Query: 434 V 434
           +
Sbjct: 544 L 544


>gi|239608018|gb|EEQ85005.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 555

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 105/186 (56%), Gaps = 1/186 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR +
Sbjct: 1   MLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKKDS-EFFKFQDRKE 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SYR+LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  ARFLLAPTHEEEITSLVAGAVNSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD +PE +  +Y+ +  +Y+R+F  L +  +   A+SG +GG LSHEF +    GE  +
Sbjct: 120 TFDYSPETAIKTYSAVKKAYIRLFDELRIPYMIATADSGNMGGSLSHEFHLPNPKGEDTI 179

Query: 222 FCSKDF 227
                 
Sbjct: 180 ISCSSC 185



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 100/194 (51%), Gaps = 21/194 (10%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-----KGADGKD--------HYV 312
                  E+   +   IE+ H F+ GT+YS  ++A+         DG            +
Sbjct: 363 DRCSKCGEHTVQTHTAIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPL 422

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +MG +GIG  R+++AV ++  D KG+ WP ++APF++ +I     D+      E++Y  +
Sbjct: 423 EMGCHGIGVSRMISAVADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDI 478

Query: 373 --SKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRED 428
              ++G  DV  DD    I  +   ADL+G+P+ +++G  + +++K+E++  RL  +RE 
Sbjct: 479 NGRQIGAVDVIVDDRDRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRET 538

Query: 429 MSLEEVINYASHRF 442
           +SL+++  +     
Sbjct: 539 VSLQDLHPFTKSLL 552


>gi|305664329|ref|YP_003860617.1| prolyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378898|gb|ADM28737.1| prolyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 493

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 154/456 (33%), Gaps = 81/456 (17%)

Query: 3   RSKY---FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +SKY   F    +   R+AEI  +             KG+  W+P G +   NV  IIR 
Sbjct: 7   QSKYGENFSQWFEWIIREAEIYDYG--------RYPVKGMGIWMPYGFQIRRNVIEIIRN 58

Query: 60  EQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVM 114
             N TG  E+  P L    L+  ES     +  E+L +     +  D  ++  PT E  +
Sbjct: 59  LLNETGHEEVLFPILIPEILFRRESEHVRGFEGEVLWVTRGGNEELDVKLVLRPTSETAI 118

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           + +    IKS                                                 Y
Sbjct: 119 SYMESFWIKS-------------------------------------------------Y 129

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            ++   Y ++      ++   +            E   + +  E       +        
Sbjct: 130 KQLPKKYYQVVSVFRYETKMTKPMIRVREITTFKEAHTVHENFED-----SERQVLEAID 184

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
             + F D + +  I+ +          ++        P+      R I++G +   G  +
Sbjct: 185 IYSKFFDELGIPYIISRRPQWDKFAGALYTIAFDTVFPDG-----RAIQIGTVHNLGQTF 239

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +       +  D    Y    SYGI + RV+A++I    D  G+I P +VAP+ + +I I
Sbjct: 240 TSVFDVKIQKRDETIDYAWQTSYGI-SERVIASIIAIHSDDIGLILPSNVAPYTVVIIPI 298

Query: 355 KAHDQVCRD----ACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSK 409
              D+         C  I+  L         D+    +   ++   +L G P+++ +G K
Sbjct: 299 PHQDEKIYQSIINYCNDIHNILKVNNIRSLIDERLDVKPAEKYRECELKGVPIRIEIGFK 358

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VS + V +  R    R  ++ +E+I+   +     
Sbjct: 359 EVSQNTVTLFRRDLRKRFTINKDELISVIKNVLEEY 394


>gi|227540188|ref|ZP_03970237.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240049|gb|EEI90064.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 490

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/434 (14%), Positives = 146/434 (33%), Gaps = 57/434 (13%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +    + +G     P G    + + AI+ +    TG      P       + + 
Sbjct: 19  LVIKADLAEYSAVRGCMVIKPYGYAIWERMQAILDKMFKDTGHSNAYFPLFIPKSFFSK- 77

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                                      E    + F +              +   +R + 
Sbjct: 78  ---------------------------EASHVEGFATECA-----------VVTHYRLKN 99

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                ++   +  +++      T E    ++Y     SY  +   +   +  +R E    
Sbjct: 100 DGAGNIIVDEDAKLEEELIVRPTSETIIWNTYRGWIESYRDLPILVNQWANVVRWEMRTR 159

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+      E     +          +        + N +           ++ 
Sbjct: 160 LFLRTAEFLWQ----EGHTAHATSQEAIEETEKMLGVYAYFAENYLAVPVVRGRKTENER 215

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   +GK  +V   S+G+ + 
Sbjct: 216 FAGALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEHVWASSWGV-ST 274

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D +G++ P  +AP ++ ++ I   D+   +     + + A L      V
Sbjct: 275 RLMGALIMAHSDDQGLVLPPMLAPIQVVIVPIYRTDEEKANIDVFVDGLNAELKAKNISV 334

Query: 380 FWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS-------L 431
            +DD   ++ G +FA  +L G PL+V VG++ + +  VE+  R T  +E +S       +
Sbjct: 335 KYDDRDTQRPGFKFAEWELKGVPLRVAVGARDMQNDTVELARRDTQTKETVSQEGLSGLI 394

Query: 432 EEVINYASHRFSNN 445
           E +++         
Sbjct: 395 EGLLDTIQENIFQK 408


>gi|29346339|ref|NP_809842.1| prolyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|81445136|sp|Q8A988|SYP_BACTN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29338234|gb|AAO76036.1| prolyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 497

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 151/429 (35%), Gaps = 49/429 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q + +G     P G    + +   + +                    + E+
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FKET 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------FLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E    ++Y     SY  +       +   R E    
Sbjct: 108 ----GVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF  L   G T     ++  +  I   N   +      ++        A     
Sbjct: 164 LFLRTAEF--LWQEGHTAHATREEAEEEAIRMLNVYGEFAEKYMAVPVVKGVKSANERFA 221

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                +    E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 222 GALDTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYV 398

Query: 439 SHRFSNNRP 447
                  + 
Sbjct: 399 QKLLEEIQA 407


>gi|258512352|ref|YP_003185786.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479078|gb|ACV59397.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 483

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 77/177 (43%), Gaps = 4/177 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++     Y G  ++      +   D +  YV   S+G+ + R++ A++    D 
Sbjct: 223 MKDGRALQTATSHYLGQNFAKSFEIQYLDKDNQLKYVYTTSWGM-STRILGAIVMVHGDD 281

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           +G++ P  ++P ++ ++ I      +       +++  L +    V  DD  +   G +F
Sbjct: 282 RGLVLPPKLSPTQVVIVPIGPAKAREAVVAKARELFDALKRADIRVHLDDRDDVSPGWKF 341

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +L G P+++ +G + +  S+  +  R TG +  + L+ VI       S+ +  L
Sbjct: 342 NEYELRGVPIRLELGPRDLEASQAVLARRDTGEKITVPLDAVIERVQALLSDIQRDL 398



 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 20/191 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ +LQ+    AE   +  +           G     P   +  +     +  E  
Sbjct: 19  FSRWYIDVLQK----AEWMDYAPVR----------GCIVIRPDAYEIWERCQRELDREFK 64

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
           RTG      P       +  E    + +  E+  +     D  ++ +   PT E +   +
Sbjct: 65  RTGHRNAYFPLFIPESFFEKEKEHVEGFNPELPWVTEAGGDILEERLAVRPTSETMFGHM 124

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E R     +R+ EFL ++ ++   T E ++    +M
Sbjct: 125 YAQWIQSYRDLPLLLNQWANVVRWEKR-TLPFLRTSEFLWQEGHTAHATEEEAREETMRM 183

Query: 178 FVSYLRIFHRL 188
              Y       
Sbjct: 184 LGIYADFVESF 194


>gi|115372906|ref|ZP_01460211.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115370173|gb|EAU69103.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 423

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 134/394 (34%), Gaps = 72/394 (18%)

Query: 60  EQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVM 114
                G      P L     L  E+   + +  ++  +      + ++ ++  PT E ++
Sbjct: 1   MFKDLGHKNAYFPLLIPESYLKKEAEHVEGFNPQLAVVTHAGGAKLEEPLVIRPTSETII 60

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
              F   I+SYR+LP    Q     R E       MR+R         F  T E      
Sbjct: 61  NRSFAKWIQSYRDLPLLINQWANVMRWE-------MRTR--------LFLRTTEFLWQE- 104

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                                        G   HE    A+    Q+             
Sbjct: 105 -----------------------------GHTCHETEADAEKETLQML-----------E 124

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
               F +      ++    +     +        +++ ++K    + ++ G     G  +
Sbjct: 125 VYRTFAEDYMAMPVLTGRKSETERFAGALRTYSIEAMMQDK----KALQAGTSHNLGQNF 180

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +      F+G DGK H+V   S+G+ + R++  +I +  D  G++ P  +AP  + +I I
Sbjct: 181 AKAFDTQFQGRDGKQHHVWQTSWGV-STRLIGGLIMTHSDDAGLVVPPRLAPTHVVIIPI 239

Query: 355 -----KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGS 408
                 A      +    + A L + G +V  DD   +  G ++   +++G  L+V +G 
Sbjct: 240 LGKAADAEKTQVLEKVHAMAADLRRAGLNVLVDDDDTKSPGFKYNEHEVVGTCLRVELGP 299

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           K ++     +  R    +E + L + +  A    
Sbjct: 300 KDLAKDSCVMVRRDVRQKEFVPLAQAVEKARAML 333


>gi|225560003|gb|EEH08285.1| prolyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 555

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 1/193 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR  
Sbjct: 1   MLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKKDS-EFFKFQDRKK 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  ARFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG+LSHEF +    GE  +
Sbjct: 120 TFDYNAEMAIKTYNAVKDTYVRLFDELRIPYIIATADSGNMGGNLSHEFHLPNPKGEDTI 179

Query: 222 FCSKDFMDFPIPS 234
                        
Sbjct: 180 ISCSSCRYVYNEE 192



 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 95/181 (52%), Gaps = 21/181 (11%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQMGSY 317
             E    +   IE+ H F+ GT+YS  ++A+                       +QMG +
Sbjct: 368 CGEQAVQTHTAIELAHTFHLGTRYSKVLNASVAVPSTLLSNDSKANDNSSVSVPLQMGCH 427

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ +S  + KG+ WP ++APF+  +I     D+   +  EK+Y  +S++  
Sbjct: 428 GIGVSRMISAIADSLANSKGLNWPRAIAPFEAMIIP----DKGLEEEAEKVYDAISRINI 483

Query: 378 DV---FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEE 433
           D      DD  + +  +   ADL+G+P+ ++VG  +  ++K+E++ HRL  +RE +SL +
Sbjct: 484 DAVDAIIDDRDKNLAWKLRDADLIGYPVIIVVGKSWRMENKLEVQCHRLNNLRETVSLPD 543

Query: 434 V 434
           +
Sbjct: 544 L 544


>gi|298385691|ref|ZP_06995249.1| proline--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298261832|gb|EFI04698.1| proline--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 497

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 151/429 (35%), Gaps = 49/429 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q + +G     P G    + +   + +                    + E+
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FKET 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------FLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E    ++Y     SY  +       +   R E    
Sbjct: 108 ----GVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF  L   G T     ++  +  I   N   +      ++        A     
Sbjct: 164 LFLRTAEF--LWQEGHTAHATREEAEEEAIRMLNVYSEFAEKYMAVPVVKGVKSANERFA 221

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                +    E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 222 GALDTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYV 398

Query: 439 SHRFSNNRP 447
                  + 
Sbjct: 399 QKLLEEIQA 407


>gi|156103089|ref|XP_001617237.1| bifunctional aminoacyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148806111|gb|EDL47510.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 765

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 137/422 (32%), Gaps = 69/422 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++++ +I  +   G Y   P      + V A   +E  +        P  +    L  
Sbjct: 287 QVIVKSELIEYYDISGCYILRPASYYIWECVQAFFNKEIKKLDVENSYFPLFVTKNKLER 346

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D    + +   PT E +M  +F   I+S+R+LP    Q   
Sbjct: 347 EKNHIEGFSPEVAWVTKYGDSTLPEEIAIRPTSETIMYSVFSKWIRSHRDLPLKLNQWNT 406

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++     E +      +   Y R +            
Sbjct: 407 VVRWEFKQPTPFIRTREFLWQEGHTAHKNEEEAVKMVFDILDLYRRWYEEC--------L 458

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S         GE     +         SEN       + + +   +   + 
Sbjct: 459 AVPIIKGIKSE--------GEKFGGANFTSTAEAFISENGRAIQAATSHYLGTNFAKMFK 510

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              +  NE        +   + R I +             M  T     G          
Sbjct: 511 IEFEDENETKQYVHQTSWGCTTRSIGI-------------MIMTHGDDKG---------- 547

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSK 374
                               ++ P  VA FK+ ++ I      + V  + C+ I   L  
Sbjct: 548 --------------------LVLPPKVAKFKVVIVPILYKNTDENVIFNYCKDIEKVLKS 587

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
              +  +DD      G +F   +L G P+++ VG K + ++      R T  + ++  E 
Sbjct: 588 AQINCIFDDRDLYSPGYKFNHWELRGVPIRIEVGPKDIQNNSCLCVRRDTNEKFNVKKES 647

Query: 434 VI 435
           V+
Sbjct: 648 VL 649


>gi|189461379|ref|ZP_03010164.1| hypothetical protein BACCOP_02034 [Bacteroides coprocola DSM 17136]
 gi|189431908|gb|EDV00893.1| hypothetical protein BACCOP_02034 [Bacteroides coprocola DSM 17136]
          Length = 496

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 149/431 (34%), Gaps = 49/431 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q   +G     P G    + +  I+ +                    +  +
Sbjct: 22  LVVKADLAEQSPVRGCMVIKPYGYAIWEKMQRILDDM-------------------FKAT 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------YLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E     +Y     SY  +       +  MR E    
Sbjct: 108 ----GVIVDPAAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+      E     +          +        +   +         + ++ 
Sbjct: 164 LFLRTAEFLWQ----EGHTAHATREEAEAEAQKMLHVYGDFAEKYMAVPVIKGVKSANER 219

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++   +  F   + K  YV   S+G+ + 
Sbjct: 220 FAGALDTYTIEGLMQDGKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I  +L ++G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVTKLREMGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +EI  R T  +E  S + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCDGIEEYV 398

Query: 439 SHRFSNNRPVL 449
            +     +  +
Sbjct: 399 KNLLEEIQENI 409


>gi|196034766|ref|ZP_03102174.1| prolyl-tRNA synthetase [Bacillus cereus W]
 gi|195992809|gb|EDX56769.1| prolyl-tRNA synthetase [Bacillus cereus W]
          Length = 476

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 67/443 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  + F     +  + AE+  +             KG     P G    +N+  ++ E+ 
Sbjct: 11  KMEEDFAQWYTDIVKKAELVDYS----------SVKGCMILRPYGYALWENMQKVMDEKL 60

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                                +G  + Y   M        K       H E         
Sbjct: 61  -------------------KATGHENVYMP-MFIPESLLQKEK----DHVEGFAPEVA-- 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                              DE       +R           F         SYN +   Y
Sbjct: 95  -------------WVTHGGDEKLAERLCIRP-----TSETLFCEHFSKIVQSYNDLPKLY 136

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +           +R E        + EF+        +           I +    F +
Sbjct: 137 NQWCS-------VVRWEKTTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCE 189

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +++         +        +SL  +     + ++ G    FGT +S      
Sbjct: 190 DYLAIPVIKGQKTEKEKFAGAKATYTIESLMHDG----KALQTGTSHNFGTNFSEAFDIK 245

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK  YV   S+G+ + R++  +I    D  G++ P  VAP ++ ++ I  H +  
Sbjct: 246 FLDRTGKWQYVHQTSWGV-STRMIGGLIMVHSDNNGLVMPPKVAPVQVVIVPIAQHKEGV 304

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   + KV   V  D   +  G +F   ++ G P+++ VG K +  ++V +  R
Sbjct: 305 LAKAIELQGHIQKV-ARVKIDASNKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRR 363

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +S++++          
Sbjct: 364 DTKEKEFISMDQLGERIPALLEE 386


>gi|121701845|ref|XP_001269187.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119397330|gb|EAW07761.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 553

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 105/188 (55%), Gaps = 1/188 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  D +  +I +     GA ++S+ ++ S +LW +SGR    G E+ R  DR +
Sbjct: 1   MLPLGLRVQDKLERLIDKHMQSVGASKVSLSSISSQELWEQSGRL-KEGSEVFRFHDRKE 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  SRFLLAPTHEEEITTLVGSLTKSYRDLPVRVYQISRKYRDEARPRQGLLRGREFMMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +YN +  +Y  +F  L +  +   A+SG +GG LSHEF   +  GE  V
Sbjct: 120 TFDYNVEEALKTYNLVKAAYKNLFDELKIPYLVAAADSGNMGGSLSHEFHFPSSKGEDTV 179

Query: 222 FCSKDFMD 229
                   
Sbjct: 180 ISCSRCDH 187



 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 95/192 (49%), Gaps = 16/192 (8%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQMG 315
           +        E    +   +E+GH F+ GT+YS  + A+           A  +   +QMG
Sbjct: 364 DGDKCIKCTEGSLKTHTAVELGHTFHLGTRYSEVLQASVMVDQSLSGGAAKDQQVPMQMG 423

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--- 372
            +GIG  R+++AV ++  D KG+ WP ++AP+++ ++  K  +       EK+Y  L   
Sbjct: 424 CHGIGVSRMISAVADNLADSKGLNWPRAMAPYEVVVVPGKGLETE----AEKVYDLLASK 479

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSL 431
                D   DD  + +G + + ADL+G+P+ ++VG  +     +E++  RL  +RE++ L
Sbjct: 480 QSSPIDTILDDREKPMGWKLSDADLIGYPVIIVVGKGWKKQQTLEVQCRRLDNLREEVPL 539

Query: 432 EEVINYASHRFS 443
           +++  +      
Sbjct: 540 DQLPAFVRSLLE 551


>gi|218288750|ref|ZP_03493013.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241108|gb|EED08284.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 483

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 4/174 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++     Y G  ++      +   D +  YV   S+G+ + R++ A++    D 
Sbjct: 223 MKDGRALQTATSHYLGQNFAKSFEIQYLDKDNQLKYVYTTSWGM-STRILGAIVMVHGDD 281

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           +G++ P  +AP ++ ++ I      +        +   L +    V  DD  +   G +F
Sbjct: 282 RGLVLPPKLAPTQVVVVPIGPAKAREAVVAKARDLAEALRRADIRVHLDDRDDVSPGWKF 341

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              +L G P+++ +G + +  S+  +  R TG +  + L+ VI       S+ +
Sbjct: 342 NEYELRGVPIRLELGPRDLEASQAVLARRDTGEKITVPLDGVIERVQALLSDIQ 395



 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 16/191 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     +  + AE   +  +           G     P   +  +     +  E  
Sbjct: 15  QSEDFSRWHIDVLQKAEWMDYAPVR----------GCIVIRPDAYEIWERCQRELDREFK 64

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
           RTG      P       +  E    + +  E+  +     D  ++ +   PT E +   +
Sbjct: 65  RTGHRNAYFPLFIPESFFEKEKEHVEGFNPELPWVTEAGGDILEERLAVRPTSETMFGHM 124

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E R     +R+ EFL ++ ++   T E ++    +M
Sbjct: 125 YAQWIQSYRDLPLLLNQWANVVRWEKR-TLPFLRTSEFLWQEGHTAHATEEEAREETMRM 183

Query: 178 FVSYLRIFHRL 188
              Y       
Sbjct: 184 LGIYADFVESF 194


>gi|281420331|ref|ZP_06251330.1| proline--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405633|gb|EFB36313.1| proline--tRNA ligase [Prevotella copri DSM 18205]
          Length = 493

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     T+   + K  YV   S+G+ + R++ A+I    D
Sbjct: 232 MMQDGKALQSGTSHFLGQNFAKSFDVTYLNKENKPEYVWATSWGV-STRLMGALIMVHSD 290

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMG-EQIGS 390
             G++ P  +AP ++ ++ I   D+       K+     +L ++G  V +DD   ++ G 
Sbjct: 291 DNGLVLPPKLAPIQVVIVPINKGDEQLAQITAKLQPVIDQLRELGITVKYDDNPAKRPGF 350

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +FA  +L G P+++ +G + + ++ +EI  R T  +E++S + ++    +   + +
Sbjct: 351 KFADYELKGVPVRLAMGGRDLENNTIEIMRRDTLEKENVSFDGIVELVKNMLEDIQ 406



 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 23/181 (12%)

Query: 25  LMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           L+++  +  + S   G     P G    + +   + +   +TG      P L     +  
Sbjct: 22  LVVKADL-AELSPVRGCMIIKPYGYAIWEKMQQQLDKMFKQTGVQNAYFPLLIPKSFFSR 80

Query: 82  ESGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIK 123
           E+     + KE   +                    + D+ +I  PT E ++ + +++ I 
Sbjct: 81  EAEHVAGFAKECAVVTHYRLRSTEDGKEVEVDPNAKLDEELIIRPTSETIIWNTYKNWIH 140

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    +M   Y  
Sbjct: 141 SWRDLPILCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATKEEAEAKAQEMLKVYAE 199

Query: 184 I 184
            
Sbjct: 200 F 200


>gi|145529361|ref|XP_001450469.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418080|emb|CAK83072.1| unnamed protein product [Paramecium tetraurelia]
          Length = 769

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 110/358 (30%), Gaps = 27/358 (7%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L    +  ++  +  H+ + +     + HQ S G   + P G    + +   +R +
Sbjct: 150 SKKLLDEYVKIQKELALRDHRNVGKKQNLYLFHQLSPGSAFFYPSGAHIYNTLMNFLRRQ 209

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + +A LW  SG YD Y + +  +    +      P +      +F  
Sbjct: 210 YYIRGYQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGEYGLKPMNCPGHCLMFDM 269

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  F    +  R+E+     G+ R R F   DA+ F    +  +        
Sbjct: 270 IQHSYRDLPVRFADFGVLHRNEVHGALSGLTRVRRFQQDDAHIF-CRMDQIQEEIKSCLD 328

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G +   +   + P     + E    A+    Q            P +    
Sbjct: 329 FLSYIYSLFGFEF-KLYLSTRPEKFLGTKEVWDNAEYQLEQGLKKFGKPFEVNPGDG--- 384

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + KL+D+     +     ++      F  +Y     
Sbjct: 385 -----------------AFYGPKIDVKLYDAYKREHQCGTIQLDFNLPERFNLQYRASED 427

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                 D +  + +        + VV        D   I      +  + +   ++  
Sbjct: 428 VQEVQQDKEQLHNEQVQAAQEIIDVVRKA-SHHSDTDNITTAPQNSQQQPAEDPVQEK 484



 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G    V +    +G++  + AV+     GK   WP  ++P ++ L  +       +D  E
Sbjct: 553 GFARPVIVHRAILGSLERMIAVLTEQCGGK---WPFWLSPKQLVLCPV---SAYYKDVAE 606

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           KI ARL   G  V  D+  + +  +   A +  F    ++G + V    ++++ 
Sbjct: 607 KIAARLRLEGYTVTTDEADQTLAKKVRNAQIQYFNFVGVIGEEEVKAGVIDVRD 660


>gi|198275270|ref|ZP_03207801.1| hypothetical protein BACPLE_01429 [Bacteroides plebeius DSM 17135]
 gi|198271853|gb|EDY96123.1| hypothetical protein BACPLE_01429 [Bacteroides plebeius DSM 17135]
          Length = 496

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/428 (14%), Positives = 147/428 (34%), Gaps = 49/428 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q   +G     P G    + +  I+ +                    +  +
Sbjct: 22  LVVKADLAEQSPVRGCMVIKPYGYAIWEKMQRILDDM-------------------FKAT 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------YLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E     +Y     SY  +       +  MR E    
Sbjct: 108 ----GVIVDPAAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+      E     +          +        +   +         + ++ 
Sbjct: 164 LFLRTAEFLWQ----EGHTAHATREEAEAEAQKMLHVYGDFAEKYMAVPVIKGVKSANER 219

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++   +  F   + K  YV   S+G+ + 
Sbjct: 220 FAGALDTYTIEGLMQDGKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I  +L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVNKLRSMGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +EI  R T  +E  S + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCDGIEEYV 398

Query: 439 SHRFSNNR 446
            +     +
Sbjct: 399 QNLLEEIQ 406


>gi|319653797|ref|ZP_08007892.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317394523|gb|EFV75266.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 479

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 147/457 (32%), Gaps = 88/457 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L  +Q+    A++  +  +           G  ++ P G +  +++   +     
Sbjct: 9   FSKWYLDTIQK----ADLFDYTPVR----------GCIAFKPDGYEIWEHIQEEMDRR-- 52

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGK----EMLRLADRNDKAMIYGPTHEEVMTDIF 118
                            + E+G  ++Y      E        D    + P     +T+  
Sbjct: 53  -----------------FKETGHRNAYFPMLIPESF-FQKEKDHIEGFSPEL-PWITEAA 93

Query: 119 RSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++    L P +   I   + D                               SY  +
Sbjct: 94  GEKLEERLALRPTSETMIGHLYSD----------------------------WIKSYRDL 125

Query: 178 ---FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 +  +F R   K++P    S     +   +    A   E         M      
Sbjct: 126 PVLINQWANVF-RWEKKTLPFIRTS-----EFLWQEGHTAHVDEEDARKETMQMLSIYKE 179

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                  I   +           A      E              + ++ G   Y GTK+
Sbjct: 180 VVEGLLAIPVYDGQKTPSERFAGAVDTFSIEA--------MMKDGKAVQAGTSHYLGTKF 231

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +      +   + K  +V   S+G  + R++ +VI    D +G++ P  +AP ++ LI +
Sbjct: 232 AEAFDIKYLNKENKHTFVHTTSWG-TSTRLIGSVIMVHGDEQGLVLPPKIAPTQVVLIPV 290

Query: 355 K--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                +    +  ++I+A L   G  V  DD  +  G +F   +L G P+++ +G + + 
Sbjct: 291 GPWKKNPAIMEKLDEIFAALKAEGIRVRLDDSDQSPGYKFNEWELKGVPVRIELGPRDLD 350

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            ++  +K R  G +  + LE +I+         +  L
Sbjct: 351 QNQCLMKARDLGDKVAVPLEAIIDSIKKELETMQNRL 387


>gi|255953035|ref|XP_002567270.1| Pc21g02050 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588981|emb|CAP95102.1| Pc21g02050 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 621

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 142/447 (31%), Gaps = 76/447 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  ++  +   G +   P      + +     +     G    S P   S D L 
Sbjct: 99  QQVLTKGDLLDYYDVSGCFILKPALFFIWEEIQEYFNKAIKGMGVKNCSFPLFVSEDVLQ 158

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 159 REKDHIEGFAAEVAWVTHAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 218

Query: 137 -LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
            +  R E +    ++RSREFL ++ ++  LT   ++     +   Y +I+    L ++P+
Sbjct: 219 SVVVRWEFKHPQPLLRSREFLWQEGHTAHLTEGAAREEVLSILDYYAKIYEE--LLAVPV 276

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQW 252
                           V     E + F   ++    +  IP+         S        
Sbjct: 277 ----------------VKGQKTEKEKFAGGNYTTTVEGYIPATGRGIQGGTSHGLGQNFS 320

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                   D  +       P             H++                        
Sbjct: 321 KMFGITVEDPTSTVDEKKPPL------------HVWQ----------------------- 345

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR- 371
              S+G+ + R +  ++    D KG++ P  VA  ++ ++ +    +   +  EK+ A  
Sbjct: 346 --NSWGL-STRSLGVMVMIHSDNKGLVLPPRVAELQVIIVPVGLTAKTTEEEREKLNAEV 402

Query: 372 ------LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--- 422
                 L   G     D      G +F   +L G PL++  G    +   V    R    
Sbjct: 403 DGLVAVLVAAGVRADSDKSSYSPGWKFNQYELRGVPLRLEFGPGESAGHFVTTARRDIPG 462

Query: 423 TGIREDMSLEEVINYASHRFSNNRPVL 449
              +  + + E+           +  L
Sbjct: 463 KDGKGSLPIPELATGVPALLETIQSDL 489


>gi|161833740|ref|YP_001597936.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri GWSS]
 gi|152206230|gb|ABS30540.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri GWSS]
          Length = 489

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 133/417 (31%), Gaps = 54/417 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG   +  P L     + +       + KE    
Sbjct: 32  GCMVIKPYGFSIWEKIKFILDKILKSTGHKNVYFPLLIPKSYFSKEYNHIKGFAKE---- 87

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                           V+T                       +R +      ++  +   
Sbjct: 88  --------------CAVIT----------------------HYRLKNFNNKNIIVDKNSK 111

Query: 157 MKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           ++D      T E    +SY +   SY  +  R    +  +R E        + EF+    
Sbjct: 112 LEDELIVRPTSETIIWNSYKRWINSYRDLPIRFNQWANIIRWERRTRFFLRTSEFLWQ-- 169

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E     S          +  +       N I           S+           E+ 
Sbjct: 170 --EGHTAHSTKKEAINQAKKIINIYTNFLENFIAIPVIQGIKTYSEKFAGAEETYCIESI 227

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + +++    + G  +S      +    G   YV   S+GI + R++ A+I +  D 
Sbjct: 228 MQDGKSLQIATSHFLGQNFSKAFDVRYTTEKGNKEYVWATSWGI-STRLIGAIIMTHSDD 286

Query: 336 KGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
            G+I P  +AP +I +I +    +           +   L K G  + +D       G +
Sbjct: 287 NGLILPPKIAPLQIVIIPVYKTQEQLNLIEKLVLPLKESLEKRGISIKYDKRTYYTPGWK 346

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM---SLEEVINYASHRFSNN 445
           F   ++ G P+++ +G K +    VE+  R T  ++D+    LE +I     +  +N
Sbjct: 347 FNEYEIKGIPIRITIGKKDIDRGTVEVVRRDTLEKKDIIINKLEFLIPKILSKIQDN 403


>gi|331270273|ref|YP_004396765.1| proline-tRNA ligase [Clostridium botulinum BKT015925]
 gi|329126823|gb|AEB76768.1| proline-tRNA ligase [Clostridium botulinum BKT015925]
          Length = 478

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 79/169 (46%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I    D 
Sbjct: 222 MHDGKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGVT-TRLIGAIIMVHGDD 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G+  P  +AP ++ ++ I  H +   +  E++ + ++K+   V  D   +  G +F   
Sbjct: 281 SGLKLPPRIAPLQVVIVPIAQHKEGVLEKAEELRSNIAKI-ARVKVDSSDKMPGWKFNEY 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K + +++V +  R T  +  +S++E+         +
Sbjct: 340 EMKGVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDELETKIPELLDD 388



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+  +             KG     P G    +N+   +  +  
Sbjct: 14  MDEDFAKWYTDIVKKAELVDYA----------SVKGCMIIRPYGYAIWENIQKYLDTKFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +     D   + +   PT E +  D 
Sbjct: 64  ETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWVTQGGNDTLAERLCVRPTSETLFCDH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+S+ +LP  + Q     R E +     +R+ EFL ++ ++   T E S      M
Sbjct: 124 YAKIIQSHNDLPKKYNQWCSVVRWE-KTTRPFLRTTEFLWQEGHTAHATAEESAQETIDM 182

Query: 178 FVSYLRIFH 186
             +Y     
Sbjct: 183 LNTYADFCE 191


>gi|153806270|ref|ZP_01958938.1| hypothetical protein BACCAC_00526 [Bacteroides caccae ATCC 43185]
 gi|149130947|gb|EDM22153.1| hypothetical protein BACCAC_00526 [Bacteroides caccae ATCC 43185]
          Length = 497

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 149/431 (34%), Gaps = 49/431 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+++  +  Q + +G     P G    + +   + +                    + E+
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FKET 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   ++  +           + E    + F        +      +         
Sbjct: 63  GHVNAYFPLLIPKS---------FLSREAEHVEGFAKECAVVTHYRLKNAEDGS------ 107

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               GV+      +++      T E    ++Y     SY  +       +   R E    
Sbjct: 108 ----GVVVDPAAKLEEELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+      E     +             +     +   +         + ++ 
Sbjct: 164 LFLRTAEFLWQ----EGHTAHATREEAEEEAVRMLNVYGEFAEKYMAVPVVKGVKSANER 219

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 220 FAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ +I I  +D+  +    K+     +L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIIPIYKNDEQLKQIDAKVAGIVTKLKALGISV 338

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETITCEGIEAYV 398

Query: 439 SHRFSNNRPVL 449
            +     +  +
Sbjct: 399 QNLLEEIQANI 409


>gi|288925105|ref|ZP_06419041.1| proline--tRNA ligase [Prevotella buccae D17]
 gi|288338295|gb|EFC76645.1| proline--tRNA ligase [Prevotella buccae D17]
          Length = 493

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I    D
Sbjct: 232 MMQDGKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLMGALIMVHSD 290

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDD-MGEQIGS 390
             G++ P  +AP ++ +I I   +   +    K+     RL  +G  V +DD   ++ G 
Sbjct: 291 DNGLVLPPKLAPIQVVIIPITKGNDQLQAINAKLQPVIDRLRDMGISVKYDDADNKRPGF 350

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +FA  +L G P+++++G + + D+ +EI  R T  +E +S + +         + +  L
Sbjct: 351 KFADYELKGVPVRLVMGGRDLEDNTIEIMRRDTLEKESVSFDGIAERVEGLLEDIQKNL 409



 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 24/197 (12%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L++  + A+  S     L+++  +  Q   +G     P G    + +   + +    TGA
Sbjct: 5   LKDLTKRADNYSQWYNDLVVKADLAEQSPVRGCMIIKPYGFAIWEKMKEQLDKMFKETGA 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    R D+ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKSSEDGCSVEVDPAARLDEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPIMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATR 183

Query: 168 EGSKHSYNKMFVSYLRI 184
           E ++    KM   Y + 
Sbjct: 184 EEAEEEAKKMLHVYAKF 200


>gi|14521178|ref|NP_126653.1| prolyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|74581662|sp|Q9V022|SYP_PYRAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|5458396|emb|CAB49884.1| proS prolyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 480

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 148/446 (33%), Gaps = 68/446 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F     E   +A I                KG+  WLP G K + N+   I    
Sbjct: 6   RWSENFSEWFNEVIEEAGILDK---------RYPVKGMNVWLPYGLKIMKNIEKFI---- 52

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 EM             +G  +     ++   +   +A        EV       H
Sbjct: 53  ----HEEM-----------ERTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFWITHAGH 97

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMR-SREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                               E      ++R + E  M   ++                  
Sbjct: 98  --------------------EPLDVKLILRPTSETAMYSMFALW---------IRSHADL 128

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +++  + +        + P+           A T       ++      I  +   FD
Sbjct: 129 PFKVYQIVNV-YRYETKHTRPLIRVREISRFFEAHTAHADFEDAERQ----IKEDLEIFD 183

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +++   +I    +                +         R +++G +  +   ++   + 
Sbjct: 184 NLMKRLAIAYIISKRPEWDKFPGAFYSLGAEVV--MPDGRTLQIGTMHNYKQNFAKAYNI 241

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHD 358
            ++  DG   YV   ++G+ + R++AAVI    D +G++ P ++AP ++ ++ I  K   
Sbjct: 242 LYEKEDGTHDYVHQTTFGM-SERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKKEKQ 300

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           ++  +   +I   L   G  V  D   ++ G +F   +L G P+++ VG + V +S V +
Sbjct: 301 EIVYEYAREIEEELRTAGIRVHLDMREKRPGWKFYDWELKGVPVRIEVGPRDVENSTVVL 360

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
             R    +  +  EE+++     F +
Sbjct: 361 ARRDKLEKITIKREELVDKVRELFDD 386


>gi|304384417|ref|ZP_07366823.1| proline--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304334515|gb|EFM00802.1| proline--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 493

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I +  D
Sbjct: 232 MMQDGKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLIGALIMTHSD 290

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDD-MGEQIGS 390
             G++ P  +AP ++ +I I  + +      E++      L K+G  V  DD   ++ G 
Sbjct: 291 DNGLVLPPKLAPIQVVVIPIARNAEQLSAIDERLRPVIEGLRKLGISVKLDDADNKRPGF 350

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +FA  +L G P+++++G + + +  +E+  R T  +E + +E ++++        +  +
Sbjct: 351 KFADYELKGVPVRLVMGGRDLENGTIELMRRDTLEKETLPIEGIVSHIQTLLDEIQANI 409



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 21/180 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  Q + +G     P G    + +   +      TGA     P L        E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDRMFKETGAQNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +     + KE   +                    + ++ +I  PT E ++ + +++ I S
Sbjct: 82  AEHVKGFAKECAVVTHYRLKASEEGNSVVVDPAAKLEEELIIRPTSETIIWNTYKNWIHS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++     M   Y R 
Sbjct: 142 WRDLPLMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATREEAEAEARTMLGVYARF 200


>gi|294495462|ref|YP_003541955.1| prolyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666461|gb|ADE36310.1| prolyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 478

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 85/170 (50%), Gaps = 2/170 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++VG   + G  ++     T++ ++G+  Y     YG+ + R +AA+I +  D 
Sbjct: 221 MPDGRTLQVGTAHHLGDNFAKTFEITYEDSEGEQVYAHQACYGV-SERCLAALISTHGDD 279

Query: 336 KGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KG++ P  VAP ++ +I I     +    ACE +   L   G  V  DD  ++ G+++  
Sbjct: 280 KGLVLPPEVAPVQVVIIPIIFKKPEEVLSACEMVAEDLKDAGIKVKIDDSDKRPGAKYYK 339

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ G P+++ +G + + +    +  R TG +E + LE++ +     F++
Sbjct: 340 WEMQGVPIRLEIGPRDLKNQAAMMARRDTGEKEQIPLEDISSTIKDTFAD 389



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 73/181 (40%), Gaps = 10/181 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G        +I+RE  +     E   P L    +   E+     + 
Sbjct: 32  VRYPVKGLYVWHPFGFTIRKKTYSIMRELLD-RDHEETMFPLLIPEHEFMKEAQHIKGFE 90

Query: 91  KEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +E+  +        +  +   PT E  +  +++  ++S+ +LP   YQI   FR E +  
Sbjct: 91  EEVYWVTHGGTSPLEVNLALRPTSETAIYPMYKLWVRSHADLPLRLYQIVNTFRYETKHT 150

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++   T E +    ++    Y   + RL   +IP+ +   P    
Sbjct: 151 RPLIRLREITSFKEAHTVHATWEDAASQIDEAMRIYKEFYRRL---AIPVLSSKRPEWDK 207

Query: 206 L 206
            
Sbjct: 208 F 208


>gi|312116222|ref|YP_004013818.1| prolyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221351|gb|ADP72719.1| prolyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 514

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 142/478 (29%), Gaps = 102/478 (21%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R + F    Q   RDA++A +  +           G     P G    + V   +     
Sbjct: 10  REQNFPEWYQAVVRDADLAENSPVR----------GCMIIKPWGYGIWERVQKGLDARIK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----------------RNDKAMI 105
            TG      P       L  E+   + + KEM  +                     + +I
Sbjct: 60  ETGHENCYFPIFIPMSFLAKEAEHVEGFAKEMAVVTHHRLKNIDGKLVPDPEAELQEPLI 119

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             PT E ++ D F+  +KSYR+LP    Q     R E       MR+R FL    + +  
Sbjct: 120 VRPTSETIIGDAFQRWVKSYRDLPILINQWANVVRWE-------MRTRMFLRTTEFLWQE 172

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                    + M  + LR+                           V     E  +    
Sbjct: 173 GHTAHADKTDAMAET-LRMLE-------------------------VYRSFAEDVLAMPV 206

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              + P        D+  S+ +                                + ++ G
Sbjct: 207 VAGEKPENERFPGADNTYSIEA---------------------------MMQDGKALQAG 239

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              Y GT ++   +  F+   G+       S+G+ + R++  VI +  D  G+  P ++A
Sbjct: 240 TSHYLGTHFAEAQNIRFQNEAGELALCHTTSWGV-STRLIGGVIMTHGDDDGLRLPPAIA 298

Query: 346 PFKISLINI---KAHDQVCRDACEKIYARLSKVG-----CDVFWDDMGEQIGSQFAVADL 397
           P +I ++ +   K  D    + C  + A L+             D+   +   +      
Sbjct: 299 PKQIVIVPMLRDKPEDAAVVEFCTSLAAELNAKAAFGEPIRAHIDNRKIKSADKRWDWVR 358

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTG------IREDMSLEEVINYASHRFSNNRPVL 449
            G PL + +G +  S   V    R             +   E +  A       +  L
Sbjct: 359 RGAPLILEIGPRDASGGNVTFTRRDALRDGPKVKSHSLPRAEFVAGAEGLLREIQGAL 416


>gi|73981319|ref|XP_860710.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 3
           [Canis familiaris]
          Length = 304

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 110/333 (33%), Gaps = 40/333 (12%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F    +S+R LP       +  R E      G+ R R F   DA+ F   P+  +    
Sbjct: 1   MFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEEEIQ 59

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   ++  LG     +   + P G                         D      
Sbjct: 60  GCLDFLRSVYAVLGFSFR-LALSTRPSG-----------------FLGESCLWDQAEQVL 101

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               ++      +     A Y    DVH   L D+L    +     ++    F    ++ 
Sbjct: 102 QRALEEFGEPWDLKPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRF- 153

Query: 296 LPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +KG  G  +  V +    +G++  +  V+  S+ GK   WP  ++PF++ +I +
Sbjct: 154 ---DLQYKGQAGVLERPVLIHRAVLGSVERMLGVLAESYGGK---WPLWLSPFQVVVIPV 207

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            A  +   +   +   RL   G     D D G  +  +   A L  +  Q +VG K  S 
Sbjct: 208 GAEQE---EYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSK 264

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             V I+ R      +  L E +        N R
Sbjct: 265 KTVNIRTRDNRQLGERDLTEAVQRLLE-LQNTR 296


>gi|34540714|ref|NP_905193.1| prolyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|81417446|sp|Q7MVS7|SYP_PORGI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34397028|gb|AAQ66092.1| prolyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 493

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 151/431 (35%), Gaps = 51/431 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
             L+++  +    + +G     P G    + +   + +                    + 
Sbjct: 20  QDLVIKADLAENSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FK 60

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+G  ++Y   +               + E    + F                +   +R 
Sbjct: 61  ETGHVNAYFP-LFIPKS--------FLSREAEHVEGFAKECA-----------VVTHYRL 100

Query: 142 ELRP-RFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P   GV+   +  +++      T E    ++Y     S+  +       +  +R E 
Sbjct: 101 KANPDGDGVVVDPQAKLEEELIVRPTSETIIWNTYKNWIQSHRDLPILCNQWANVVRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF+      E     +             +     +   +         + 
Sbjct: 161 RTRLFLRTAEFLWQ----EGHTAHATKEEAEEEARRMLEVYATFAEEYMAMPVVKGVKSA 216

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           ++     +     E      + ++ G   + G  ++   + TF   DG   +V   S+G+
Sbjct: 217 NERFAGAVDTYTIEALMQDGKALQSGTSHFLGQNFAKAFNVTFADKDGNRDFVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVG 376
            + R++ A+I S  D  G++ P  +AP+++ +I I  +++      +   +I   L   G
Sbjct: 277 -STRLMGALIMSHSDDNGLVLPPKLAPYQVVIIPIYRNEEQLAQIDEKATQITQALRAKG 335

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  +L G P+++ +G++ + ++ +EI  R T  +E + L+ + 
Sbjct: 336 ISVKYDNSDNKKPGWKFAEYELKGIPVRLAMGARDLENNTIEIARRDTLTKETVGLDGIE 395

Query: 436 NYASHRFSNNR 446
              +    + +
Sbjct: 396 ETVATLLDDIQ 406


>gi|212535538|ref|XP_002147925.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210070324|gb|EEA24414.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 594

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 134/420 (31%), Gaps = 79/420 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G +   P      + +     ++  + G    S P   S D L 
Sbjct: 95  QQVLTKGEMLDYYDVSGCFILKPSSYFVWETIQNWFNDKIKKMGVRNCSFPLFVSEDVLQ 154

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 155 REKDHIEGFAAEVAWVTHAGSTPLERKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 214

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +          FL    + +                                 
Sbjct: 215 SVVRWEFKHPQP------FLRTREFLWQE------------------------------- 237

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                  G  +H    L + G  +           +      ++D++++  +  + T   
Sbjct: 238 -------GHTAH----LTEEGAAEEVMQILDHYAHV------YEDLLAVPVVRGKKTEKE 280

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------ 310
                 +   +   +P     + RGI+ G     G  +S     T +  + K        
Sbjct: 281 KFAGGYYTTTVEGYIPA----TGRGIQGGTSHCLGQNFSKMFGITVEDPNAKPDEKGASL 336

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------ 364
           +V   S+G+ + R +  ++    D KG++ P  VA  +  ++ +        +       
Sbjct: 337 HVWQNSWGL-STRTIGVMVMIHSDNKGLVLPPRVAEIQTIIVPVGITKSTTDEERAQIYN 395

Query: 365 -CEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            C ++ ++LS VG     D       G +F   +L G PL++  G        V    R 
Sbjct: 396 DCAELASKLSAVGVRAETDLRDGYSPGYKFNDWELRGVPLRLEFGPGEAKGGFVTAARRD 455


>gi|289192307|ref|YP_003458248.1| threonyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938757|gb|ADC69512.1| threonyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 620

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 143/426 (33%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 216 PGHFRWYPKGKLIRDLLADYVYNLVVSMGAMPVETPIMYDLGNKAIREHADKFGERQYRF 275

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPRF-GVMRSRE 154
              N + ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 276 RQGN-RELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 334

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  E +   + K F   L+    L L    +   +     +    F  +A
Sbjct: 335 FTMPDMHTVCLNLEQAMEEFEKQFWECLKTGDDLNLSYSVIFRFTKDFFDEHRDWFFKIA 394

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                  ++      + I+E             +  + DSL   
Sbjct: 395 ----------------------KEYKSKYGKDVILEILPKRKHYWVGKVDIAVIDSLGRP 432

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIE--- 330
                  I+V          +          +G+ + + +     G+  RV+  ++E   
Sbjct: 433 IENPTVQIDVES--------AKRFDIKVHTNEGEVYPIILHCSPTGSIERVLCGLLEKAA 484

Query: 331 -SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             + +G   + P  ++P ++ +I +    +   D   K+  +L +      +DD  E + 
Sbjct: 485 IEAKEGNAPMLPVWLSPIQVRVIPVA---ERHYDYALKVAEKLRESNIRADFDDREESVS 541

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN 444
            +   A     P  V+VG + +      V I+ + T     +E M+++E+I       +N
Sbjct: 542 KKIRNAGKEWIPYVVVVGDEEMESGKLTVTIREKSTLKKPYKEKMTVDELIERVKKETAN 601

Query: 445 --NRPV 448
              RP+
Sbjct: 602 YPYRPL 607


>gi|301626888|ref|XP_002942619.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 683

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 78/221 (35%), Gaps = 7/221 (3%)

Query: 8   LPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   ++   +A    H+ + R       H  S G   +LP G    + +   I+ E  + 
Sbjct: 316 LKEWEKAQEEAINRDHRKIGRDQELYFFHDLSPGSCFFLPRGAHIYNVLIDFIKSEYRKR 375

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW  SG ++ YGK M       ++     P +      +F    +S
Sbjct: 376 GFTEVITPNMYNNKLWETSGHWEHYGKNMFSFTVE-EETFSLKPMNCPGHCLMFDHRPRS 434

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R+EL     G+ R R F   DA+ F  + E  +   N        
Sbjct: 435 WRELPLRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CSMEQLEGEINGCLDFLRT 493

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           ++   G     +   + P       E    A+    +    
Sbjct: 494 VYSVFGFTF-KLFLSTRPEQFMGEEEVWQQAEAELEKSLNG 533



 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +  V +    +G++  + A++  ++ GK   WP  ++PF++ +I +  +         K+
Sbjct: 544 ERPVMIHRAVLGSVERMLAILAENYGGK---WPLWLSPFQVMVIPVGPN---VESYAYKV 597

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              +   G  V  D D G  +  +   A +  +   ++VG K   +S V ++ R +    
Sbjct: 598 QRMIHDAGFMVDLDTDHGTTLNKKIRKAQVAQYNFILVVGDKEKQNSTVNVRTRDSKQHG 657

Query: 428 DMSLEEVINYASHR 441
           +  L+ ++   +  
Sbjct: 658 ERELKALLVRLTEL 671


>gi|187776737|ref|ZP_02993210.1| hypothetical protein CLOSPO_00252 [Clostridium sporogenes ATCC
           15579]
 gi|187775396|gb|EDU39198.1| hypothetical protein CLOSPO_00252 [Clostridium sporogenes ATCC
           15579]
          Length = 478

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 78/169 (46%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  ++      +   +GK   V   S+G+   R++ A+I    D 
Sbjct: 222 MHDGKALQTGTSHYLGDHFASAFGIQYSDKEGKLQNVHQTSWGVT-TRMLGAIIMVHGDN 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP ++ ++ +  H +   D   ++  R+ KV   V  DD  +  G +F   
Sbjct: 281 SGLVVPPRIAPIQVVIVPVAQHKEGVLDKAYELKERVGKV-ARVKLDDTDKMPGWKFNEY 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K +  ++V +  R T  +  +S++E+    S   + 
Sbjct: 340 EMKGVPIRLEVGPKDIEKNQVVLVRRDTREKITVSMDELEVVISELLNK 388



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 16/186 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             + F     +  + AE+A +  +    +I           P      + +   + E   
Sbjct: 14  MDEDFAQWYTDIVKKAELADYSSVRGCMIIR----------PYAYAMWEMIQKDLDERFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDI 117
            TG   + +P      L   E    + +  E+  +    ++ +       PT E +  + 
Sbjct: 64  ATGHENVYMPLFIPESLLNKEKDHIEGFAPEVAWVTHGGEEELTERLCVRPTSETLFCEH 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++SY++LP  + Q     R E +     +R+ EFL ++ ++   T E ++    +M
Sbjct: 124 YAKIVQSYKDLPKLYNQWCSVVRWE-KTTRPFLRTAEFLWQEGHTIHATAEEARKETEQM 182

Query: 178 FVSYLR 183
              Y +
Sbjct: 183 LNVYAK 188


>gi|315608143|ref|ZP_07883135.1| proline--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250112|gb|EFU30109.1| proline--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 493

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I    D
Sbjct: 232 MMQDGKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLMGALIMVHSD 290

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDD-MGEQIGS 390
             G++ P  +AP ++ +I I       +    K+     RL  +G  V +DD   ++ G 
Sbjct: 291 DNGLVLPPKLAPIQVVIIPITKGADQLQAINAKLQPVIDRLRDMGISVKYDDADNKRPGF 350

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +FA  +L G P+++++G + + D+ +EI  R T  +E +S + +         + +  L
Sbjct: 351 KFADYELKGVPVRLVMGGRDLEDNTIEIMRRDTLEKESVSFDGIAERVEGLLEDIQKNL 409



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 24/197 (12%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L++  + A+  S     L+++  +  Q   +G     P G    + +   + +    TGA
Sbjct: 5   LKDLTKRADNYSQWYNDLVVKADLAEQSPVRGCMIIKPYGFAIWEKMKEQLDKMFKETGA 64

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L        E+     + KE   +                    R D+ ++  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKSSEDGCSVEVDPAARLDEELVIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPIMCNQWCNVMRWEMRTR-PFLRTSEFLWQEGHTAHATR 183

Query: 168 EGSKHSYNKMFVSYLRI 184
           E ++    KM   Y + 
Sbjct: 184 EEAEEEAKKMLHVYAKF 200


>gi|145511255|ref|XP_001441555.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408805|emb|CAK74158.1| unnamed protein product [Paramecium tetraurelia]
          Length = 937

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 99/302 (32%), Gaps = 30/302 (9%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    ++ I +E   RD      K  L   + HQ S G   + P G    + +   +R +
Sbjct: 314 KLLDEYVKIQKELAQRDHRNVGKKQNLY--LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQ 371

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + +A LW  SG YD Y + +  +    +      P +      +F  
Sbjct: 372 YYIRGYQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGEYGLKPMNCPGHCLMFDM 431

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  F    +  R+E+     G+ R R F   DA+ F    +  +        
Sbjct: 432 VQHSYRDLPIRFADFGVLHRNEVHGALTGLTRVRRFQQDDAHIF-CRMDQIQDEIKNCLD 490

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G +   +   + P     + +    A+    Q            P +    
Sbjct: 491 FLSYIYSLFGFEF-KLYLSTRPEKFLGTKDVWDNAEYQLEQGLKKFGKHFEINPGDG--- 546

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A      + KL+D+     +     ++    F    +++L   
Sbjct: 547 -----------------AFYGPKIDVKLYDAYKREHQCGTIQLD----FNLPERFNLQFR 585

Query: 300 AT 301
           A+
Sbjct: 586 AS 587



 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G    V +    +G++  + AV+     GK   WP  ++P ++ L  +       RD  E
Sbjct: 727 GFARPVIIHRAILGSLERMIAVLTEQCGGK---WPFWLSPKQLILCPV---SAYYRDVAE 780

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           KI ARL   G  V  D+  + +  +   A +  +    ++G + V    ++I+ 
Sbjct: 781 KISARLRLEGYTVNTDESDQTLAKKVRNAQVQYYNFVGVIGEEEVRTGVIDIRD 834


>gi|302845190|ref|XP_002954134.1| hypothetical protein VOLCADRAFT_109913 [Volvox carteri f.
           nagariensis]
 gi|300260633|gb|EFJ44851.1| hypothetical protein VOLCADRAFT_109913 [Volvox carteri f.
           nagariensis]
          Length = 618

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 128/433 (29%), Gaps = 72/433 (16%)

Query: 24  KLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L++ + +I +    G Y   P      + V     +   + G      P   + D L  
Sbjct: 147 ELVVASELISYYEVSGCYILRPWAYAMWEMVQGWFDKRIKQLGVQNSYFPLFITEDVLNK 206

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        +K +   PT E VM                 F Q   
Sbjct: 207 EKDHVEGFAPEVAWVTKCGNSTMEKPIAIRPTSETVMYPY--------------FAQWIR 252

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             RD                         P       N +         R   K      
Sbjct: 253 SHRD------------------------LPLRLNQWTNVV---------RWEFKYPTPFI 279

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            S        H      +    +V    +                   +   +   A Y 
Sbjct: 280 RSREFLWQEGHTAFATQEEAAREVLDILELYRGVYEDMLAVPVTKGKKSKKEQFAGAFYT 339

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T + +  +             RGI+       G  +S      F+  D +  YV   S+
Sbjct: 340 TTVEAYIPETG-----------RGIQGATSHCLGQNFSKMFGIQFEDDDRQKQYVWQNSW 388

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD------QVCRDACEKIYAR 371
           G+   R +  +I +  D KG++ P  VAP ++ +I I          Q   +   ++   
Sbjct: 389 GLT-TRSLGVMIMTHADDKGLVLPPRVAPKQVVIIPIPKASTTPETVQAMMEKVTELAEA 447

Query: 372 LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L K G  V  D       G ++   +L G PL++ +G K + +S V +  R TG +E + 
Sbjct: 448 LEKAGVRVVTDTRVNYTPGWKYNHWELKGLPLRMELGPKDMENSVVVLARRDTGAKEAVP 507

Query: 431 LEEVINYASHRFS 443
             +V         
Sbjct: 508 WTDVAARVPALLE 520


>gi|238063301|ref|ZP_04608010.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885112|gb|EEP73940.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 468

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/453 (15%), Positives = 151/453 (33%), Gaps = 77/453 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           R++ F    Q+    A++A +  +  T +I           P G    + + A +     
Sbjct: 8   RAEDFPRWYQDLIAKAKLADNGPVRGTMVIR----------PAGYAIWERMQAEMDARIK 57

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDI 117
             GA     P          E+   + +  E+  +         + ++  PT E V+ + 
Sbjct: 58  AAGAENAYFPLFIPESYLKREAEHVEGFSPELAVVTHGGGKQLAEPVVVRPTSETVIGEF 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                           +    +RD       ++ +      +   ++L P          
Sbjct: 118 --------------MAKWIDSYRD-----LPLLLN---QWANVVRWELRP---------- 145

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                RIF R                   + EF  L   G T    S D   +     + 
Sbjct: 146 -----RIFLR-------------------TSEF--LWQEGHTAHATSSDARAYARRILHE 179

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            ++D++ +N +            +           E      + +++G     G  ++  
Sbjct: 180 AYEDLM-VNVLGIPVVVGLKTVRERFAGATATYTCEGMMGDGKALQLGTSHELGQNFAKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              ++  A+G   +    S+G  + R++  +I +  D  G+  P  +AP +  ++ +KA 
Sbjct: 239 FDISYSSAEGGREHAWTTSWG-TSTRMLGGLIMAHGDDNGLRVPPRLAPVQAYVMVVKAG 297

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D    +A  K+   L   G  V  DD  +   G +   A+L G+P++V VG + ++    
Sbjct: 298 D-GVGEAAAKLCDALRDAGVRVALDDRTDTPFGRRAVDAELRGYPVRVEVGPRDLAAGNA 356

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  R  G +    + +V+         ++  L
Sbjct: 357 VVVRRTDGSKSPTPVADVVGAVLAALETDQRAL 389


>gi|255654137|ref|ZP_05399546.1| prolyl-tRNA synthetase [Clostridium difficile QCD-23m63]
          Length = 481

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D
Sbjct: 222 MMHDGKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSD 280

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
            +G++ P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F 
Sbjct: 281 NRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFN 340

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             ++ G P+++ +G K + +++  +  R T  ++ M LE + +     F
Sbjct: 341 EWEMKGVPVRIEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAVCDLF 389


>gi|188994851|ref|YP_001929103.1| prolyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|259511612|sp|B2RJG1|SYP_PORG3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188594531|dbj|BAG33506.1| prolyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 493

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/431 (13%), Positives = 151/431 (35%), Gaps = 51/431 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
             L+++  +    + +G     P G    + +   + +                    + 
Sbjct: 20  QDLVIKADLAENSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FK 60

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+G  ++Y   +               + E    + F                +   +R 
Sbjct: 61  ETGHVNAYFP-LFIPKS--------FLSREAEHVEGFAKECA-----------VVTHYRL 100

Query: 142 ELRP-RFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P   GV+   +  +++      T E    ++Y     S+  +       +  +R E 
Sbjct: 101 KANPDGDGVVVDPQAKLEEELIVRPTSETIIWNTYKNWIQSHRDLPILCNQWANVVRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF+      E     +             +     +   +         + 
Sbjct: 161 RTRLFLRTAEFLWQ----EGHTAHATKEEAEEEARRMLEVYATFAEEYMAMPVVKGVKSA 216

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           ++     +     E      + ++ G   + G  ++   + TF   DG   +V   S+G+
Sbjct: 217 NERFAGAVDTYTIEALMQDGKALQSGTSHFLGQNFAKAFNVTFADKDGNRDFVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVG 376
            + R++ A+I S  D  G++ P  +AP+++ ++ I  +++      +   +I   L   G
Sbjct: 277 -STRLMGALIMSHSDDNGLVLPPKLAPYQVVIVPIYRNEEQLAQIDEKATQIIQALRAKG 335

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  +L G P+++ +G++ + ++ +EI  R T  +E + L+ + 
Sbjct: 336 ISVKYDNSDNKKPGWKFAEYELKGVPVRLAMGARDLENNTIEIARRDTLTKETVGLDGIE 395

Query: 436 NYASHRFSNNR 446
              +    + +
Sbjct: 396 ETVATLLDDIQ 406


>gi|293977850|ref|YP_003543280.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri DMIN]
 gi|292667781|gb|ADE35416.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri DMIN]
          Length = 489

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 132/417 (31%), Gaps = 54/417 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG   +  P L     + +       + KE    
Sbjct: 32  GCMVIKPYGFSIWEKIKFILDKILKSTGHKNVYFPLLIPKSYFSKEYNHIKGFAKE---- 87

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                           V+T                       +R +      ++  +   
Sbjct: 88  --------------CAVIT----------------------HYRLKNFNNKNIIVDKNSK 111

Query: 157 MKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           ++D      T E    +SY +   SY  +  R    +  +R E        + EF+    
Sbjct: 112 LEDELIVRPTSETIIWNSYKRWINSYRDLPIRFNQWANIIRWERRTRFFLRTSEFLWQ-- 169

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E     S          +  +       N I           S+           E+ 
Sbjct: 170 --EGHTAHSTKKEAINQAKKIINIYTNFLENFIAIPVIQGIKTYSEKFAGAEETYCIESI 227

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + +++    + G  +S      +    G   YV   S+GI + R++ A+I +  D 
Sbjct: 228 MQDGKSLQIATSHFLGQNFSKAFDVRYTTEKGNKEYVWATSWGI-STRLIGAIIMTHSDD 286

Query: 336 KGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
            G+I P  +AP +I +I +    +           +   L K G  + +D       G +
Sbjct: 287 NGLILPPKIAPLQIVIIPVYKTQEQLNLIEKLVLPLKESLEKRGISIKYDKRTYYTPGWK 346

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM---SLEEVINYASHRFSNN 445
           F   ++ G P+++ +G K +    VE+  R T  ++ +    LE +I     +  +N
Sbjct: 347 FNEYEIKGIPIRITIGKKDIDRGTVEVVRRDTLEKKYIIINKLEFLIPKILSKIQDN 403


>gi|255732025|ref|XP_002550936.1| threonyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240131222|gb|EER30782.1| threonyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 1059

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 112/343 (32%), Gaps = 39/343 (11%)

Query: 110  HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
            +      +F+S  +SYR+LP+      +  R+E      G+ R R F   DA+ F  T +
Sbjct: 744  NCPGHAVMFKSRERSYRDLPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIF-CTAD 802

Query: 169  GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                    +F    +++   G +   M   + P       E    A+    Q        
Sbjct: 803  QIGTEIAGVFDLLKKMYGIFGFEF-KMELSTRPEKYVGDLETWNGAEQKLEQAL------ 855

Query: 229  DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                        D        E      A      +  + D+L    + +   ++    F
Sbjct: 856  ------------DEFLGKGKWELNPGDGAFYGPKIDIMISDALKRWFQCATIQLD----F 899

Query: 289  YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                ++ L               V +    +G++  + A++   + GK   WP  ++P +
Sbjct: 900  QLPHRFELEYK---TDKGPTSRPVMIHRAILGSVERMTAILTEHYKGK---WPFWLSPRQ 953

Query: 349  ISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            I ++ +        D  + +  RL+         D  G  +  +     +  +    IVG
Sbjct: 954  ILIVPVGPK---YYDYAQTLQKRLNDEHSFYCDVDVSGNTLPKKIRTGQMYKYNFIFIVG 1010

Query: 408  SKFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFSNNR 446
             +    + V +++R      G    + +++VI        + R
Sbjct: 1011 DEEEKSNSVNVRNRDIPEEQGKNAMVKVDDVIQQLLDLKQSKR 1053



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      +  L      + S G   WLP G +  + +   +REE  
Sbjct: 295 MTEHLKFLAEAAERDHRKIGKEQELF--FFSEMSPGSAMWLPHGTRIYNTLVETLREEYR 352

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
           + G  E+  P + S  LW  SG + +Y + M        +     P + 
Sbjct: 353 KRGYDEVITPNMYSTKLWETSGHWQNYKENMFSFEVEK-ETFGLKPMNC 400


>gi|156098721|ref|XP_001615376.1| threonyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148804250|gb|EDL45649.1| threonyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 912

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 100/308 (32%), Gaps = 33/308 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      KL          S G   WLP G K  + +   +R E     
Sbjct: 427 YLNFLEEAKKRDHRNVGKKLHFF-FFDKDTSPGSCFWLPHGAKIYNKLIDFVRREYRIRL 485

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S DLW  SG Y +Y   M        K     P +      +F+    SY
Sbjct: 486 YDEVITPNVFSCDLWRTSGHYQNYKDCMFIFNVE-QKEWGMKPMNCPGHCVMFKQLNASY 544

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP       +  R+E+     G+ R R F   D++ F  T E  K            I
Sbjct: 545 RSLPIRLADFGVLHRNEISGSLSGLTRVRRFQQDDSHIF-CTFEQIKEEVLGTLHFIFFI 603

Query: 185 FHRLGLKSIPMRAESGP---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +   G K   +   + P   IG   + +F   A+        S +        +      
Sbjct: 604 YDLFGFKY-ELFLSTRPKKFIGNISTWDF---AEQALKDALNSANIPWKLNEGDG----- 654

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSA 300
                          A      +  L DS+    +     ++      F  +Y +    A
Sbjct: 655 ---------------AFYGPKIDILLKDSINRTHQCGTIQLDFQLPCRFNLQYKNRDFGA 699

Query: 301 TFKGADGK 308
             +G DG+
Sbjct: 700 LAEGGDGE 707



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G D  V +    +G++    A++     GK   W   ++P +  ++ +        D   
Sbjct: 762 GFDRPVIIHRAILGSVERFVAILIEHTAGKLPFW---ISPRQAIVLPV---SDKFNDYAH 815

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            ++  L+    DV  D     +  +   A L  F   ++VG K ++ + V +++R     
Sbjct: 816 YVHQTLNNHLFDVEIDTSLNTLNKKIREAQLNQFNFILVVGEKELTTNTVTVRNRDDQNN 875

Query: 427 EDM-SLEEVINYASHRFS-NNRP 447
            ++ SLEE+I         N++P
Sbjct: 876 HEVCSLEELIARFGKLLEVNSKP 898


>gi|196230369|ref|ZP_03129231.1| threonyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196225299|gb|EDY19807.1| threonyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 692

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 112/346 (32%), Gaps = 30/346 (8%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
                 +      +F +  +SYR+LP    +    +R E     FG+MR R   M DA+ 
Sbjct: 375 YYLKAMNCPHHHKLFAAVPRSYRDLPLRLAEYGTCYRYEQSGELFGLMRVRSMQMNDAHI 434

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           +  T E  +  +  +   YL+ F   G+    MR  +              A  G  Q F
Sbjct: 435 Y-CTEEQFESEFRAVNEMYLKYFAIFGIDKYVMRFST-----------HDPAKLG--QKF 480

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                +                +N I        A      + +++ ++     ++   +
Sbjct: 481 VDNSELWLKTEDMVRGVLQRTGINFIEV--PNEAAFYGPKIDVQVWSAIGREFTIATNQV 538

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +      FG         T+K  D      + +    +G        +   + G   +W 
Sbjct: 539 DFAVPARFG--------LTYKDRDNTSKTPLCIHRAPLGTHERFVGFLIEHYAGNFPLW- 589

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             ++P ++ ++ I   + +     + I A L   G     D   + I ++ A A+ +   
Sbjct: 590 --LSPEQVRVLPIGDEEPLVN-YAKAIQAELRAAGVRANLDSSSDPIKAKIASAEQMKVH 646

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
             +++G + +    V ++    G        EVI          R 
Sbjct: 647 TMLVLGHRDLEAGNVSVRVHGKGNLGAKPRAEVIADLLAAIKERRA 692



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              YF  + +   RD      +L L          G+  WLP G   ++ +  + +E + 
Sbjct: 188 MEAYFTMLEEAKKRDHRKLGKELELFC-FDDDVGPGLPLWLPRGTVLIEELEKLAKETEF 246

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RND 101
             G   +  P L   ++++ SG    Y + M    + R D
Sbjct: 247 AGGYDRVRTPVLARENMYLTSGHLPYYAESMFPPMELRED 286


>gi|326675882|ref|XP_002665325.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic,
           partial [Danio rerio]
          Length = 464

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/439 (13%), Positives = 136/439 (30%), Gaps = 112/439 (25%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  R   +A+   H+ + +       H  S G   +LP G    + +   IR E +
Sbjct: 114 KMLKEWERFQEEAKSRDHRKIGKDQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIRGEYS 173

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E++ P + ++ LW  S                                 ++    
Sbjct: 174 RRGFQEVATPNIYNSRLWETS-----------------------------GHWQLY---T 201

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +S          I      E++     +RS                              
Sbjct: 202 QSILESGQKL-SIGS----EMKGCLDFLRS------------------------------ 226

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G     +   + P            A+                 P +       
Sbjct: 227 -VYSVFGFSF-QLHLSTRPQKFLGDEALWNQAEKQLENSLNEFGEPWKLNPGDG------ 278

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                         A      +  + D++    + +   ++    F    +++L    T+
Sbjct: 279 --------------AFYGPKIDINIKDAIGRYHQCATIQLD----FQLPIRFNL----TY 316

Query: 303 KGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G DG  +D  V +    +G++  + A++  ++ GK   WP  ++P ++ L+ +    + 
Sbjct: 317 VGKDGDDRDRPVIIHRAILGSVERMIAILTENYAGK---WPLWLSPRQVMLVPVNPSLE- 372

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +  +++  R  + G     D D    +  +   A L  +   ++VG K    + V ++
Sbjct: 373 --EYAKQVCKRFVEAGFMADADLDSSCLLNKKIRNAQLAQYNFILVVGEKERLSNSVNVR 430

Query: 420 HRLTGIREDMSLEEVINYA 438
            R   +  ++ + EV+   
Sbjct: 431 TRDNKVHGELPVLEVMERL 449


>gi|126697616|ref|YP_001086513.1| prolyl-tRNA synthetase [Clostridium difficile 630]
 gi|255099208|ref|ZP_05328185.1| prolyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255304991|ref|ZP_05349163.1| prolyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|122974211|sp|Q18CD7|SYP2_CLOD6 RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|115249053|emb|CAJ66864.1| Prolyl-tRNA synthetase [Clostridium difficile]
          Length = 481

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D
Sbjct: 222 MMHDGKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSD 280

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
            +G++ P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F 
Sbjct: 281 NRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFN 340

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             ++ G P++V +G K + +++  +  R T  ++ M LE + +     F
Sbjct: 341 EWEMKGVPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLF 389


>gi|303243566|ref|ZP_07329908.1| threonyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302486127|gb|EFL49049.1| threonyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 631

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/438 (15%), Positives = 140/438 (31%), Gaps = 54/438 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R+ EI  ++     G           W P G+   D +   +         + +  P + 
Sbjct: 214 REKEICDYEPSSDAGHFR--------WYPKGKLIRDLLEDYVYNMVVENNGMPVETPVMY 265

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      D +G+   R    N K ++           + +      ++LP   Y++
Sbjct: 266 DLGNKAIREHADKFGERQYRFKQGN-KELMLRFAACFGQFMMKKDMYILPKHLPLKLYEL 324

Query: 136 QL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E R    G+ R R F M D ++     + +   +   F   L+    L     
Sbjct: 325 STYSFRYEQRGELVGLKRLRAFTMPDMHTVCYDIKQAMEEFENQFWMCLKTGDDLNTPYS 384

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   +     +    F  +A                       ++ +    + I+E   
Sbjct: 385 IIFRYTKDFFDENKEWFFKIA----------------------KEYKEKYGKDVILELLP 422

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                     +  + DS           I+V          +   +      + K + + 
Sbjct: 423 KRKHYWVGKVDMAVIDSFGRPIENPTVQIDVES--------AKRFNIVVHDGNEKIYPII 474

Query: 314 MGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +     G++ RV+  ++E +      G   + P  ++P ++ +I +        D    I
Sbjct: 475 LHCSPTGSVERVLCGLLEKASMDAEAGAPPMLPVWLSPIQVRVIPV---SDAHNDYALNI 531

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG---- 424
             +L +    V +DD  E +G +   A     P  V++G + V ++ + I  R       
Sbjct: 532 AKKLRENNIRVDYDDREESVGKKIRNAGKDWIPYVVVIGDEEVKNNILTITVREKSALKK 591

Query: 425 -IREDMSLEEVINYASHR 441
            ++E M+++E+I      
Sbjct: 592 PVKEKMTVDELIERIKEE 609


>gi|327401820|ref|YP_004342659.1| threonyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327317328|gb|AEA47944.1| threonyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 615

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 142/429 (33%), Gaps = 50/429 (11%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           K +           G   + P G+     +   + ++    GA+E+  P + S +     
Sbjct: 200 KKLQLADYEEASDSGHMRYYPKGRLIKSLLETFVTQKCIEYGAMEVETPIMYSREH-PTL 258

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKFRDE 142
            RY         +   + +              +      +Y+NLP   Y++    FR E
Sbjct: 259 RRYLERFPARQYIIKGDKREFFLRFAACFGQFLMCSDATITYKNLPLRMYELTRYSFRKE 318

Query: 143 LRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            R    G+ R R F M D ++     E +K  +   +   +     +GL+          
Sbjct: 319 QRGELVGLRRLRAFTMPDMHTLTKDMEQAKQEFFNQYKLSVETLKEIGLEP--------- 369

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E   +A                          D++    +VE W   +     
Sbjct: 370 -------EDYEVA-------IRVTKDFYNENKEFVHSLVDVLKKPILVEMWDQRFFYFVL 415

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGS-YGI 319
                  D+L +   +S   I+V +              T+    G K+H   +      
Sbjct: 416 KFEFNFVDALEKASALSTVQIDVENAER--------YDITYVNEKGEKEHPFILHCSASG 467

Query: 320 GAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              R + A++E ++     GK  + P  ++P ++ +I +    +   D   ++  +++  
Sbjct: 468 AIERCIYALLEKAYMEKEKGKLPMLPVWLSPTQVRIIPV---SEKYVDYAIEVAKKMN-- 522

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIK---HRLTGIREDMS 430
           G  V  DD  E +G +   A +   P   +VG   V++    V I+    +    R  MS
Sbjct: 523 GVRVDVDDRDETLGKKIRDASMEWIPYIAVVGENEVNEGYLTVTIRSESTQKEQKRVKMS 582

Query: 431 LEEVINYAS 439
           +EE++    
Sbjct: 583 VEELVERIR 591


>gi|225550771|ref|ZP_03771720.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379925|gb|EEH02287.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 472

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 141/416 (33%), Gaps = 69/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
           KG+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  
Sbjct: 35  KGMMVFQPNAWAIWEAIKNQIDLEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFM 94

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK         PT E +  + F++ + SY +LP    Q     R E         
Sbjct: 95  VNQIGDKKLDNPYAIRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL                                                  + EF 
Sbjct: 148 TRPFLR-------------------------------------------------NAEFH 158

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E     + +           D       N +            +          
Sbjct: 159 WQ----ELHAIFASEHEADEFAKTILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I  
Sbjct: 215 IEAMMQDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +G+I P  +A  +I++++I    +       E+I   LS     +F D   + +G 
Sbjct: 274 HADDQGLILPPDIAFNQIAILSIFANKNPQLLTISEQIRNELSD--YRLFEDHSDKGVGY 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + A  ++ G P+ ++VG K +++ +V +  R T  + +++L ++ +       + +
Sbjct: 332 KLAQQEIEGTPICILVGVKELANQQVVLVRRDTHEKINVNLVDLESTVKKLLLDIK 387


>gi|326804116|ref|YP_004321934.1| proline--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650465|gb|AEA00648.1| proline--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 484

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/454 (15%), Positives = 144/454 (31%), Gaps = 82/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L  +Q+    A++ ++  +           G   + P G    + +     ++  
Sbjct: 14  FSKWYLQSIQK----ADLFAYGPVR----------GTMVFKPNGYALWEKIKTEFDKKFK 59

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            +G      P L     +  E+   + +  E+  +     +  ++ +   PT E +  + 
Sbjct: 60  ASGVKNCYFPMLIPESFFKKEADHVEGFAPELPWVTRAGDEELEEPVALRPTSETLFGNA 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SYR+LP    Q    FR E R     +R+ EFL ++ +    + E ++      
Sbjct: 120 MSDWINSYRDLPMELNQWANVFRWEKR-TLPFLRTSEFLWQEGHCAYASEEEARERTMHF 178

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y        L ++P+ A         S +F    DT             + I +   
Sbjct: 179 LKVYQETVED--LLALPVYAGQKT----PSEKFAGGVDT-------------YSIEAMVK 219

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           D   + +  S         A      N +                 +G            
Sbjct: 220 DTKSVQAGTSHYLGTNFAEAFDIKYLNTENQHVYAHTSSWGVSTRLIGT----------- 268

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-- 355
           M        G     +M                              AP +I+LI +   
Sbjct: 269 MIMAHGDEKGVVFPPKM------------------------------APIQIALIPVGNV 298

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +       E I   L   G   + DD     G ++  A++ G PL++  G + + + +
Sbjct: 299 KKNPEVLTRLEAIEKDLQAAGYSTYLDDSNNSAGYKYNEAEVKGVPLRIEFGPRDMENGQ 358

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             IK R    +E ++L+++++  +      +  L
Sbjct: 359 CMIKMRDLEDKEAVNLDDLLDKVASEMETMQKRL 392


>gi|296448072|ref|ZP_06889975.1| prolyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296254429|gb|EFH01553.1| prolyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 514

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 146/474 (30%), Gaps = 102/474 (21%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F    Q    +A++A    +           G     P G    + + A + +    TG 
Sbjct: 13  FAQWYQAVVAEADLAETSPVR----------GCMIVKPWGYGVWELIQAALDKRIKETGH 62

Query: 67  IEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----------------DKAMIYGPT 109
                P          E+   + + KEM  +                    ++ +I  PT
Sbjct: 63  ENCYFPLFIPMSFIAQEASHVEGFAKEMAVVTHHRLKSVDGKLVVDPDSKLEEPLIVRPT 122

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
            E ++ D FR  + S+R+LP    Q     R E       MR+R FL    + +      
Sbjct: 123 SETIIGDAFRRWVSSHRDLPVLINQWANVVRWE-------MRTRLFLRTSEFLWQEGHTA 175

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                +                    R E+  +         V  +  E  +       +
Sbjct: 176 HADEADA-------------------REETRKM-------LEVYREIVEDVLAVPVIAGE 209

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P         +  S+ +                                + ++ G   Y
Sbjct: 210 KPENERFPGAVNTYSIEA---------------------------MMQDGKALQAGTSHY 242

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            GT ++   +  F+GA G+  +    S+G+ + R+V  VI +  D  G+  P ++AP +I
Sbjct: 243 LGTNFAHAQNIRFQGASGELEFCHTTSWGV-STRLVGGVIMTHGDDDGLRLPPAIAPKQI 301

Query: 350 SLINI---KAHDQVCRDACEKIYARLS-----KVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            ++ +   K  D      CE + A L      K       D    +  ++       G P
Sbjct: 302 VVVPMLRDKPEDSEVLAYCEALKADLDDLVALKAPLRAHVDKKPVRAANKRWDWARRGAP 361

Query: 402 LQVIVGSKFVSDSKVEIKHRL---TGIRED---MSLEEVINYASHRFSNNRPVL 449
           + + +G +  S+  V +  R     G +     M   + +  A    +  +  L
Sbjct: 362 IILEIGPRDASNGMVTMIRRDRLRDGDKIVSVGMPRADFLATAPALLAEIQKNL 415


>gi|73667729|ref|YP_303744.1| prolyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|114152210|sp|Q46G28|SYP_METBF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72394891|gb|AAZ69164.1| prolyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 480

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 135/414 (32%), Gaps = 57/414 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +    KG+Y W P G     N   II                    ++   SG      +
Sbjct: 32  VRYPVKGLYVWYPFGFAIRRNTYNII-------------------REILDNSGH----QE 68

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +  L           P +E      F    +  +      Y +    RD L     +  
Sbjct: 69  ALFPL---------LIPENE------FMKEAEHIKGFEDEVYWVTHGGRDTLDIPLALRP 113

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + E  +   Y   +                ++I+  +          + P+         
Sbjct: 114 TSETAIYPMYKMWV---------RSHADFPIKIYQIVN-TFRYETKHTRPLIR-----LR 158

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +    E     +          E       I     V    +              D+L
Sbjct: 159 EITSFKEAHTVHATWEDAEAQVKEAIGLYTEIYRRLGVPVLRSRRPDWDKFPGADYTDAL 218

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R +++G   + G  ++      ++  DG+  Y     YGI + R +AA I  
Sbjct: 219 DAI-MPDGRTLQIGTAHHLGDNFAKTFDIKYETPDGEQRYAYQTCYGI-SERSIAATISI 276

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D KG++ P  +AP ++ +I I  K   +    AC+ +  RL+K G  V  D    + G
Sbjct: 277 HGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVLAACKDVKERLTKAGIRVEIDASDLRPG 336

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++   ++ G PL++ +G + + ++      R TG +E +SL E+    S +F 
Sbjct: 337 AKYYKWEMKGVPLRLEIGPRDLQNNVAVAVRRDTGEKEQISLPEIEAGVSSKFE 390


>gi|296449824|ref|ZP_06891591.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296877888|ref|ZP_06901908.1| proline--tRNA ligase [Clostridium difficile NAP07]
 gi|296261311|gb|EFH08139.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296431085|gb|EFH16912.1| proline--tRNA ligase [Clostridium difficile NAP07]
          Length = 510

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D
Sbjct: 251 MMHDGKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSD 309

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
            +G++ P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F 
Sbjct: 310 NRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFN 369

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             ++ G P+++ +G K + +++  +  R T  ++ M LE + +     F
Sbjct: 370 EWEMKGVPVRIEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAVCDLF 418


>gi|282889555|ref|ZP_06298097.1| hypothetical protein pah_c001o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500568|gb|EFB42845.1| hypothetical protein pah_c001o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 505

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 143/443 (32%), Gaps = 88/443 (19%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADL 79
           ++ +++   + ++S   G     P G    +N+   + ++   TG      P     + L
Sbjct: 20  YQQVVKAADLAENSPVRGCMVIKPWGYGIWENMQKYLDQKIKSTGHENAYFPLFIPLSFL 79

Query: 80  WVESGRYDSYGKEML-----RLADRN---------DKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+   + + KE       RL +RN         ++ +I  PT E ++ + F   ++SY
Sbjct: 80  EKEAAHVEGFAKECAVVTHHRLEERNGKLIPTGELEEPLIVRPTSETIIGESFSRWVESY 139

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP    Q     R E       MR R         F  T E      + +  S    F
Sbjct: 140 RDLPLLINQWANVVRWE-------MRPR--------IFLRTAEFLWQEGHTVHASSEEAF 184

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                       E+  +                 +V+         IP    +       
Sbjct: 185 E-----------ETLKM----------------LEVYREFVENILAIPVITGEKSPGERF 217

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
              V  +T                          + ++ G   + G  ++   +  F   
Sbjct: 218 PGAVSTYTIE------------------MMVQDRKALQGGTSHFLGQNFAKASNIRFSNK 259

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCR 362
           DG+  Y    S+GI   R++ A+I +  D  GI  P  +A  ++ ++ I     H+    
Sbjct: 260 DGETEYGHTTSWGIT-TRLIGALIMTHGDDDGIRLPPKIAHRQVVILPIMPKPEHEAAVL 318

Query: 363 DACEKIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
              EK+   L           V  D    + G +       G P+++ +G + V +  V 
Sbjct: 319 GQAEKVAQELRSSTFNGQPISVHVDKRDLRGGEKNWEWIKKGVPIRIEIGPRDVENQVVT 378

Query: 418 IKHRLT--GIREDMSLEEVINYA 438
           +  R      +  + + E+    
Sbjct: 379 LCRRDQPHKTKITIPVAELSQKL 401


>gi|77409695|ref|ZP_00786360.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77171693|gb|EAO74897.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 549

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N D      +N   +              E   D     K    RGIE+GHIF  
Sbjct: 326 AVSGANQDGYHFTGVNPERDFTAEYVDIREVKEGEISPDGKGTLKFA--RGIEIGHIFKL 383

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKG 337
           GT+YS  M A     +G+ + + MG YGIG  R+++AVIE                   G
Sbjct: 384 GTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWG 443

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I +P+ +APF + LI +   DQ  +D  EKI A L   G +V  DD  E++GS+F+ +DL
Sbjct: 444 INFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDL 503

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G P++V VG K  S+  VE+K + +G   ++  + +I    
Sbjct: 504 IGLPIRVTVGKK-ASEGIVEVKIKASGDTIEVHADNLIETLE 544



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 99/174 (56%), Gaps = 2/174 (1%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           M  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY+ L
Sbjct: 1   MLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRDAVKSYKQL 60

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +Y  IF R 
Sbjct: 61  PLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKAYEAIFTRA 120

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           GL    +  + G +GG  S EF+ +              +D  IPS +   +D+
Sbjct: 121 GLDFKGIIGDGGAMGGKDSQEFMAVTPNRTD--LNRWLVLDKTIPSIDDIPEDV 172


>gi|87199967|ref|YP_497224.1| prolyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
 gi|114152224|sp|Q2G6Y3|SYP_NOVAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87135648|gb|ABD26390.1| prolyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
          Length = 515

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 79/481 (16%), Positives = 153/481 (31%), Gaps = 104/481 (21%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +R+  F    Q    +AE+A       +G+     +G     P G    + +  ++  E 
Sbjct: 13  KRADDFAQWYQAVIAEAELAE-----ESGV-----RGCMVIKPWGYGIWERIQKLMDAEI 62

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN-----------------DKA 103
              G      P       +  E+   + + KEM  +                     ++ 
Sbjct: 63  KEAGVENCYFPLFIPLSYFTKEAEHVEGFAKEMAVVTHHRLISDGKGGLTPDPEAKLEEP 122

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E V+       I+S+R+LP    Q     R E+R R   +R+ EFL ++ ++ 
Sbjct: 123 LVVRPTSETVIGAAMSRWIQSWRDLPLLTNQWANVVRWEMRTRM-FLRTSEFLWQEGHTA 181

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
            +    +     +    Y R F   G  ++P+ A   P       E        ET    
Sbjct: 182 HVDEADAMKETLRALEMY-RAFAE-GPLAMPVIAGPKP-------ENERFPGAVETFSIE 232

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +       + +  + +                                            
Sbjct: 233 AMMQDGKALQAGTSHY-------------------------------------------- 248

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +G  F      +      ++  +G+       S+G+ + R++  VI +  D  G+  P  
Sbjct: 249 LGTTF------AKAAGIQYQNKEGQQALAHTTSWGV-STRLIGGVIMTHGDDDGLRVPPQ 301

Query: 344 VAPFKISLINI---KAHDQVCRDACEKIYARLSKV-----GCDVFWDDMGEQIGSQFAVA 395
           VAP +I ++ +      D      CE+I A L K+        V  D    +   +    
Sbjct: 302 VAPQQIVILPMLRDNEGDDALLAYCEEIRASLVKLSVFGERIRVLLDKRPGKATQKRWAW 361

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS-------LEEVINYASHRFSNNRPV 448
              G PL + +G +      V +  R    R+D          ++ +  A+    + +  
Sbjct: 362 VKKGMPLILEIGGRDAEGGLVSVLRRDRLWRQDAKPNFVGQAKDDFLASAATELESIQAA 421

Query: 449 L 449
           L
Sbjct: 422 L 422


>gi|329963564|ref|ZP_08301043.1| proline--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328528553|gb|EGF55524.1| proline--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 497

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 152/432 (35%), Gaps = 51/432 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +  Q + +G     P G    + +   + +                    + 
Sbjct: 20  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FK 60

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+G  ++Y   ++  +           + E    + F                +   +R 
Sbjct: 61  ETGHVNAYFPLLIPKS---------FLSREAEHVEGFAKECA-----------VVTHYRL 100

Query: 142 ELRPRFGVMRSREFLMKDAY-SFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P  G +        +       T E    ++Y     SY  +       +   R E 
Sbjct: 101 KNDPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF  L   G T     ++  +  +   N   +      ++        A  
Sbjct: 161 RTRLFLRTAEF--LWQEGHTAHATREEAEEEAVRMLNVYGEFAEKYMAVPVVKGVKSANE 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                   +    E      + ++ G   + G  ++      F   + K  YV   S+G+
Sbjct: 219 RFAGALNTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G
Sbjct: 277 -STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMG 335

Query: 377 CDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  ++ G P+++++G + + ++ +EI  R T  +E  S E + 
Sbjct: 336 ISVKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCEGIE 395

Query: 436 NYASHRFSNNRP 447
            Y        + 
Sbjct: 396 EYVKDLLEEIQA 407


>gi|218131142|ref|ZP_03459946.1| hypothetical protein BACEGG_02747 [Bacteroides eggerthii DSM 20697]
 gi|317476982|ref|ZP_07936224.1| prolyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|217986662|gb|EEC52996.1| hypothetical protein BACEGG_02747 [Bacteroides eggerthii DSM 20697]
 gi|316906775|gb|EFV28487.1| prolyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 497

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 152/432 (35%), Gaps = 51/432 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +  Q + +G     P G    + +   + +                    + 
Sbjct: 20  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FK 60

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+G  ++Y   ++  +           + E    + F                +   +R 
Sbjct: 61  ETGHVNAYFPLLIPKS---------FLSREAEHVEGFAKECA-----------VVTHYRL 100

Query: 142 ELRPRFGVMRSREFLMKDAY-SFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P  G +        +       T E    ++Y     SY  +       +   R E 
Sbjct: 101 KNDPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF  L   G T     ++  +  +   N   +      ++        A  
Sbjct: 161 RTRLFLRTAEF--LWQEGHTAHATREEAEEEAVRMLNVYGEFAEKYMAVPVVKGVKSANE 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                   +    E      + ++ G   + G  ++      F   + K  YV   S+G+
Sbjct: 219 RFAGALNTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G
Sbjct: 277 -STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMG 335

Query: 377 CDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  ++ G P+++++G + + ++ +E+  R T  +E  S + + 
Sbjct: 336 ISVKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIE 395

Query: 436 NYASHRFSNNRP 447
            Y        + 
Sbjct: 396 EYVKDLLEEIQA 407


>gi|329954822|ref|ZP_08295839.1| proline--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328526926|gb|EGF53937.1| proline--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 497

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/432 (15%), Positives = 152/432 (35%), Gaps = 51/432 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +  Q + +G     P G    + +   + +                    + 
Sbjct: 20  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FK 60

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+G  ++Y   ++  +           + E    + F                +   +R 
Sbjct: 61  ETGHVNAYFPLLIPKS---------FLSREAEHVEGFAKECA-----------VVTHYRL 100

Query: 142 ELRPRFGVMRSREFLMKDAY-SFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P  G +        +       T E    ++Y     SY  +       +   R E 
Sbjct: 101 KNDPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF  L   G T     ++  +  +   N   +      ++        A  
Sbjct: 161 RTRLFLRTAEF--LWQEGHTAHATREEAEEEAVRMLNVYGEFAEKYMAVPVVKGVKSANE 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                   +    E      + ++ G   + G  ++      F   + K  YV   S+G+
Sbjct: 219 RFAGALNTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EKI    A+L  +G
Sbjct: 277 -STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKIAGIVAKLKSMG 335

Query: 377 CDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  ++ G P+++++G + + ++ +E+  R T  +E  S + + 
Sbjct: 336 ISVKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIE 395

Query: 436 NYASHRFSNNRP 447
            Y        + 
Sbjct: 396 EYVKDLLEEIQA 407


>gi|145608824|ref|XP_369830.2| hypothetical protein MGG_06345 [Magnaporthe oryzae 70-15]
 gi|145016254|gb|EDK00744.1| hypothetical protein MGG_06345 [Magnaporthe oryzae 70-15]
          Length = 617

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 19/209 (9%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H+ ++R G + Q + GI+  +PLG +  D +  +I +     GA  +++ TL S  +W +
Sbjct: 43  HEKLVRAGYLRQANAGIFHLMPLGYRVQDKIMKLIEKHMQSIGASRLALATLSSPGIWAK 102

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           SGR++                       EE +T + +  + SY+ LP   YQI  KFRDE
Sbjct: 103 SGRFEK-------------------AMTEEEITTLVKHTLSSYKQLPARLYQITPKFRDE 143

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPR G++R REF+MKD Y+FDL+   +  +Y ++  +Y RIF  L L  +   A SG I
Sbjct: 144 MRPRKGLLRGREFMMKDLYTFDLSVNTALQTYEQVRAAYDRIFSELRLPVMVAEASSGDI 203

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           GGDLSHE+ +    GE  V          
Sbjct: 204 GGDLSHEYHLPTSEGEDDVISCSRCHYMA 232



 Score =  136 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 42/206 (20%)

Query: 266 KLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATFK---------------GADG 307
           +  D+ P+    +    +  E+GH F+ G +YS PM  T K                 +G
Sbjct: 406 RDGDACPKCDSGTLSVRKATELGHTFHLGDRYSEPMGLTVKLPNTSQAESGSNTVSDEEG 465

Query: 308 K----------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +          +  VQMG +GIG  R++AAV E   D +G+ WP ++AP+++++I   + 
Sbjct: 466 QIYSFSSKRQGEVNVQMGCHGIGVSRIIAAVAEHFGDSRGLNWPRAIAPYEVAIITKNSL 525

Query: 358 DQVCRDACEKIYARLSKVGC---------DVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                   E IY  LS+ G          D+  DD  + +  +   ADL+G+P+ V++G 
Sbjct: 526 GD-----AESIYDLLSEGGAIATPAFPKPDLVLDDRDKTLPWKLKDADLVGYPVVVVLGK 580

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEV 434
            +V   + E++ R    +E ++L+ +
Sbjct: 581 AWVESKQCEVQCRQLSFKELVALDNL 606


>gi|325261340|ref|ZP_08128078.1| proline--tRNA ligase [Clostridium sp. D5]
 gi|324032794|gb|EGB94071.1| proline--tRNA ligase [Clostridium sp. D5]
          Length = 480

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 75/168 (44%), Gaps = 1/168 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++     +FG+ +       +   + + H V   S+G+ + R++ A+I    D 
Sbjct: 222 MHDGKALQSATSHFFGSSFPDAFDIKYADKNNELHSVYETSWGL-STRIIGAIIMVHGDD 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP +  +I I  H +   D   ++   L   G     DD  +  G +F+  
Sbjct: 281 SGLVLPPRIAPVQTRVIPIAQHKEGVLDKANELLDVLKAAGYKAKIDDSEKSPGWKFSEQ 340

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LG P ++ +G K + +++V +  R T  +  +S++E+         
Sbjct: 341 EMLGIPTRIEIGPKDIENNQVVVVRRDTREKIVVSIDEITTKLGEILE 388



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG  ++LP G    +N+ + + +    TG   + +P L    L   ES   + +  E+  
Sbjct: 38  KGCLNYLPNGYAIWENIQSDLDKRFKDTGVENVYLPVLIPEALLQKESDHIEGFAPEVAW 97

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +R  +     PT E +  D++   ++SYR+LP  + Q     R E +     +R
Sbjct: 98  VTHGGLERLQERFCIRPTSETLFCDLWSKTVQSYRDLPKVWNQWCSVLRWE-KTTRPFLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           SREFL ++ ++   T E ++     M   Y      
Sbjct: 157 SREFLWQEGHTIHATYEEAEQRTLTMRDVYRDFIQD 192


>gi|328773429|gb|EGF83466.1| hypothetical protein BATDEDRAFT_15636 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 504

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 132/443 (29%), Gaps = 58/443 (13%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             ++N   A   S  L+    M +    G Y   P       ++           G  + 
Sbjct: 5   TAKKNEDFANWYSQVLLRAEMMDYYDISGCYIIRPWAYTIWKHIQKFFGSHIEELGVEDC 64

Query: 70  SVPTLQS-ADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             P      +L  E    + +  E+  +         + +   PT E VM   + + I+S
Sbjct: 65  YFPMFVPEKNLNKEKDHIEGFSPEVAWVTRAGQSDLAEPIAIRPTSETVMYPYYSTWIRS 124

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E +     +R+REFL ++ ++   T E +     ++   Y R+
Sbjct: 125 HRDLPLRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATKEEADTEVLQILDLYRRV 184

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    + ++P+                V     E + F    +         T    I  
Sbjct: 185 YEE--ILAVPV----------------VPGRKSEKEKFAGGLYTTTVEGFVPTTGRAIQC 226

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S              + N+                    + +   T+    M      
Sbjct: 227 ATSHCLGQNFSKMFKILMENDARERVNVWQ-----------NSWGLTTRTIGVMVMVHGD 275

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G     ++ S  +  +                       P  I+            D 
Sbjct: 276 DKGLILPPRVASIQVVVV-----------------------PVGITAKTSLEDRAAINDK 312

Query: 365 CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            E++ A L K G     D       G ++   +L G PL++ VG K ++ ++     R  
Sbjct: 313 AEELTAVLKKAGIRSKSDCRDNYSPGYKYNHWELKGVPLRLEVGPKDIAKNETRCVRRDN 372

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G  + +SL ++    S      +
Sbjct: 373 GAAQQLSLVDISTTVSTMLETVQ 395


>gi|213582472|ref|ZP_03364298.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 238

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 83/267 (31%), Gaps = 39/267 (14%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     S E    A+          +        E   +  
Sbjct: 1   YDMYSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGP 60

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
            I                                    R  + G +      +SLP  +S
Sbjct: 61  KIEFTLYDC---------------------------LDRAWQCGTV---QLDFSLPSRLS 90

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++ G D +    V +    +G+M     ++     G    W   +AP ++ ++NI    
Sbjct: 91  ASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW---LAPVQVVVMNIT--- 144

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV +
Sbjct: 145 DSQSEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAV 204

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       + + +VI        + 
Sbjct: 205 RTRRGKDLGSLDVNDVIEKLQQEIRSR 231


>gi|147835152|emb|CAN65677.1| hypothetical protein VITISV_002012 [Vitis vinifera]
          Length = 435

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 82/257 (31%), Gaps = 4/257 (1%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G      +    ++  
Sbjct: 82  QLKAYLHFKEEAKRRDHRRLGIDLDLFS-IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIH 140

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  
Sbjct: 141 IEHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRK 200

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 201 LHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 259

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  + G     +   + P     + +    A +        K +           + 
Sbjct: 260 IEEILLQFGFSKYEVNLSTRPEKAVGADDIWEKATSALRDALDDKGWSYRIDEGGGAFYG 319

Query: 241 DIISLNSIVEQWTAPYA 257
             I L            
Sbjct: 320 PKIDLKIEDALGRKWQC 336



 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G        GE+  +    ++     L  +VG K V    V ++ R  G    M
Sbjct: 344 QQLKANGIQAEV-CNGERFPTLIRNSEKQRITLMAVVGPKEVETQIVTVRSRFGGELGTM 402


>gi|147835150|emb|CAN65675.1| hypothetical protein VITISV_002010 [Vitis vinifera]
          Length = 342

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 82/257 (31%), Gaps = 4/257 (1%)

Query: 3   RSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + K +L   +E  R D       L L + +  +   G+  W P G      +    ++  
Sbjct: 81  QLKAYLHFKEEAKRRDHRRLGIDLDLFS-IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIH 139

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  
Sbjct: 140 IEHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRK 199

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +  K     +   
Sbjct: 200 LHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRGVLDL 258

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I  + G     +   + P     + +    A +        K +           + 
Sbjct: 259 IEEILLQFGFSKYEVNLSTRPEKAVGADDIWEKATSALRDALDDKGWSYRIDEGGGAFYG 318

Query: 241 DIISLNSIVEQWTAPYA 257
             I L            
Sbjct: 319 PKIDLKIEDALGRKWQC 335


>gi|330888315|gb|EGH20976.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 402

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 4/169 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M      + +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFTTESES-RDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
           R LP    +     R+E      G+MR R F   DA+ F    +    S
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES 396


>gi|13358015|ref|NP_078289.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762025|ref|YP_001752537.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920192|ref|ZP_02931576.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508558|ref|ZP_02958076.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701893|ref|ZP_02971547.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|81858603|sp|Q9PQ38|SYP_UREPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511629|sp|B1AJ93|SYP_UREP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|11279770|pir||B82890 prolyl aminoacyl-tRNA synthetase UU452 [imported] - Ureaplasma
           urealyticum
 gi|6899444|gb|AAF30864.1|AE002141_10 prolyl aminoacyl-tRNA synthetase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827602|gb|ACA32864.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902571|gb|EDT48860.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182676000|gb|EDT87905.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701201|gb|EDU19483.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 472

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 137/404 (33%), Gaps = 69/404 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
           KG+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  
Sbjct: 35  KGMMVFQPNAWAIWEAIKNQIDVEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFM 94

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK         PT E +  + F++ + SY +LP    Q     R E         
Sbjct: 95  VNQIGDKKLDNSYAIRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL                                                  + EF 
Sbjct: 148 TRPFLR-------------------------------------------------NAEFH 158

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E     + +           D       N +            +          
Sbjct: 159 WQ----ELHAIFASENEADSFAKVILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I  
Sbjct: 215 IEAMMQDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +G+I P  +A  +I+++ I    +       ++I  +L+     +F D   + IG 
Sbjct: 274 HADDQGLILPPDIAFNQIAILTIFSNKNPQLLKISQQICEQLNN--YRLFEDHSDKGIGY 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + A  ++ G P+ ++VG+K + + +V I  R T  + ++ L ++
Sbjct: 332 KLAQQEIEGTPICILVGAKELVNQQVVIVRRDTHEKINVDLTDL 375


>gi|18977665|ref|NP_579022.1| prolyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|74580758|sp|Q8U1C4|SYP_PYRFU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18893393|gb|AAL81417.1| prolyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 479

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R +++G +  +   ++   +  ++  DG   YV   ++G+ + R++AAVI    D 
Sbjct: 217 MPDGRTLQIGTMHNYKQNFAKAYNILYEKEDGTHDYVHQTTFGM-SERLLAAVIAIHGDD 275

Query: 336 KGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +G++ P ++AP ++ ++ I     ++       +I   L   G  V  D   ++ G +F 
Sbjct: 276 RGMVLPPTIAPIQVVIVPIPKKGSEEEVYSYAREIEEELKLAGIRVHLDLRDKRPGWKFY 335

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +L G P+++ VG +  ++  V +  R    +  +S EE+++     F +
Sbjct: 336 DWELKGVPVRIEVGPRDAAEKTVVLARRDKLEKITVSREELVDKVRELFDD 386



 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 15/201 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+ F     E   +A I                KG+  WLP G K + N+   I EE 
Sbjct: 6   KWSENFSEWFNEVIEEAGILDK---------RYPVKGMNVWLPYGLKIMKNIEKFIHEEM 56

Query: 62  NRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
            RT   E+  P L    +   E+     +  E+  +     + +    +  PT E  M  
Sbjct: 57  ERTDHQEVLFPALIPETEFQKEAEHIAGFEGEVFWVTHAGHEPLDVRLVLRPTSETAMYS 116

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM-KDAYSFDLTPEGSKHSYN 175
           +F   I+S+ +LPF  YQI   +R E +    ++R RE     +A++     E ++    
Sbjct: 117 MFALWIRSHADLPFKVYQIVNVYRYETKHTRPLIRVREISRFFEAHTAHADFEDAERQIK 176

Query: 176 KMFVSYLRIFHRLGLKSIPMR 196
           +    +  +  +L +  +  +
Sbjct: 177 EDLEIFDNLMKKLAIAYVISK 197


>gi|84490351|ref|YP_448583.1| threonyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|121731075|sp|Q2NE13|SYT_METST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84373670|gb|ABC57940.1| ThrS [Methanosphaera stadtmanae DSM 3091]
          Length = 614

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 152/429 (35%), Gaps = 51/429 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R+ E+AS++     G I         W P G+   D ++  + +   + GA+ +  P + 
Sbjct: 206 REKELASNEPAADVGHIR--------WYPKGKLVKDLLSDYVYQLVTQRGAMPVETPVMY 257

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      + +G+   RL  ++ + ++           I      +++N+P   Y++
Sbjct: 258 DLANPAIREHAEKFGERQYRLKTKH-RELMLRFACCFGAFRILADSFLTWKNMPVGIYEL 316

Query: 136 QL-KFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E +    G+ R R F M D +S  L  + ++  +        +    L +   
Sbjct: 317 STFSFRFERQGEVVGLKRLRAFTMPDFHSVCLNDDHAREVFANQVDMCAQTETDLDVHY- 375

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                                   E     ++DF D           + I    ++E   
Sbjct: 376 ------------------------EVAFRVTQDFFDENEDWIKEVVKNNIKKPVLLEVIP 411

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                 +   +    D L          +++     FG         T+   + +  Y  
Sbjct: 412 KMKHYWNAKVDFAAIDDLGRPIENPTVQMDIQSAKRFG--------ITYLDENEEQQYPT 463

Query: 314 M--GSYGIGAMRVVAAVIESSHDGKG--IIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +   S      RV+ +++E +   KG     P  +AP ++ +I +  +     D  ++IY
Sbjct: 464 ILHCSPTGSIERVICSLLEKTSTDKGNKPSLPLWLAPTQVRIIPVTDN---HLDYAKEIY 520

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            ++      V  DD  E++G +   A     P  ++VG   V ++ + +  R+   +E++
Sbjct: 521 QQIRDSNIRVDIDDTAERVGKKIRNAGKEWIPYTIVVGDNEVENNSISVNRRVDNTKEEI 580

Query: 430 SLEEVINYA 438
           S+E++    
Sbjct: 581 SIEDLAEEI 589


>gi|110667672|ref|YP_657483.1| prolyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121689813|sp|Q18JG3|SYP_HALWD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109625419|emb|CAJ51843.1| proline--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 512

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 139/438 (31%), Gaps = 76/438 (17%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E  + AE+A++      GM      G     P      + V + +     +TG      P
Sbjct: 23  EVVQKAELANYGP---EGM-----SGFIVTRPRAYGLWERVQSYLDTRFKQTGVQNAYFP 74

Query: 73  TLQSADLWVESGRY-DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
                          + +  E+  +     +  ++ +   PT  E +   +         
Sbjct: 75  LFIPEGYLEREKEIVEGFDPEVAWVEQAGRNELEERLAVRPTS-ESIIAPY--------- 124

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
                 Q    +RD        +  R         ++ T         K F        +
Sbjct: 125 ----LSQWIRSYRD--------LPLRVNQWTSVVRWEATE-------TKPFFRTKEFLWQ 165

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G  +   RA+               A+T               +    + ++D++++  
Sbjct: 166 EGHTAHATRAD-------------AWAET------------MLRLNQYESTYEDLLAIPV 200

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +                  +   +P+ K      ++     Y GT+++     T+   D 
Sbjct: 201 LQGAKPEHDKFPGADTTTTVEALMPDGK-----SVQGATSHYLGTEFADAFDITYTDTDE 255

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDAC 365
                   S+G+ + R + A+I +  D +G++ P +VAP ++ ++ I      +   +  
Sbjct: 256 TSRVAHTTSWGL-SWRALGALIMTHSDNQGLVLPPTVAPEQVVIVPIWQTETKERVLEYA 314

Query: 366 EKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E +   L   G  V  DD  +   G +F   +L G PL+  +G    ++  V + HR  G
Sbjct: 315 EDVANNLDDAGIRVELDDRDDQNPGFKFNEWELKGVPLRAEIGPDEATEGTVTLIHRPDG 374

Query: 425 IREDMSLEEVINYASHRF 442
                   E++     +F
Sbjct: 375 ESITAERSEIVETVQEQF 392


>gi|299821392|ref|ZP_07053280.1| proline--tRNA ligase [Listeria grayi DSM 20601]
 gi|299817057|gb|EFI84293.1| proline--tRNA ligase [Listeria grayi DSM 20601]
          Length = 495

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 1/174 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + +++      G  +S      F   +G D  V   S+GI   R + A+I    D 
Sbjct: 236 MYDGKALQIATSHDLGDVFSSAFGIEFTNREGIDTPVYQSSWGIT-TRTIGALIMVHGDD 294

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +G++ P  +AP ++ ++ I  H +    A E I ARL + G     D   +Q G +F  +
Sbjct: 295 RGLMLPPRIAPIQVIIVPIAQHKEGVIAAGESILARLQEKGIRTKIDLSDKQPGWKFNES 354

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ G P+++ +G + +   +V +  R TG +  +++E +  Y +      +  L
Sbjct: 355 EMKGIPIRIEMGPRDMEAGQVIVVRRDTGEKTAVAMEGLEAYVTELLETIQRNL 408



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 16/192 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +R + F     +    AE+AS+             KG     P G    + +   I    
Sbjct: 27  KREEDFAQWYTDVVLKAELASYS----------SVKGCMVIRPTGYALWEGIQQYIDRHL 76

Query: 62  NRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTD 116
             TG   + +P L     L  E+   + +  E+  + +  ++ +       PT E +  +
Sbjct: 77  KATGHENVYMPLLIPEGKLKQEAEHVEGFAPELAWITETGEEKLAERLAIRPTSEVLFAE 136

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            F+  I S+R+LP  + Q     R E +     +R+ EFL ++ ++   T E ++     
Sbjct: 137 HFKEIIHSHRDLPKRYNQWANVVRLE-KNTRPFLRTTEFLWQEGHTCHETHEEAQEEVMA 195

Query: 177 MFVSYLRIFHRL 188
           +   Y  +   L
Sbjct: 196 ILDLYTAVCEEL 207


>gi|290559258|gb|EFD92597.1| Anticodon-binding domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 329

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 119/350 (34%), Gaps = 35/350 (10%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLM 157
            +++     P +      +F+S  +SYR LP          R EL     G+ R+R    
Sbjct: 8   ESEEEYALKPMNCPFSAILFKSKTRSYRELPMRLSDYGFLHRYELEGTLDGLFRTRLMEQ 67

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            D++ + +  +  +    +MF      ++   LK I ++  + P       E    A+  
Sbjct: 68  NDSHVYVM-EDQIESEMMRMFDIMDDTYNPFDLKPI-IKLATRPEKRIGDEELWDKAEKI 125

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +    + +       +   +   I + ++        A                    
Sbjct: 126 LKETLDKRGYNYEIKEGDGAFYGPKIDIYALDFSGKPEDAYAVST--------------- 170

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
                 +   F    ++     A + G+D K+H  + +    +G++     +I  +  G 
Sbjct: 171 ------IQLDFNLAVRF----DAKYIGSDNKEHFPIVIHRSIMGSIGRFMGIILENSKGD 220

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              W   ++P ++ ++ I   +       E +  +L + G  V  +     +  +     
Sbjct: 221 LPFW---ISPVQVRVLTITEKNAK---YAENVIKKLKENGIRVDSELDSGTLEYKIRKGQ 274

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           L   P  +I+GSK    + + +++R      ++ L+E I+         R
Sbjct: 275 LEKIPYIIIIGSKEEEKNTISVRNRKGKTDYNIDLDEFISERLEDIKQRR 324


>gi|289758965|ref|ZP_06518343.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T85]
 gi|289714529|gb|EFD78541.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T85]
          Length = 513

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            ARGIE+GHIF  G+KY+   +A   G DGK   + MGSYGIG  R+VA V E  HD  G
Sbjct: 348 MARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMGSYGIGVSRLVAVVAEQHHDELG 407

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP +VAPF + L+ I   D   R     + A L ++G +V  DD     G +F  A+L
Sbjct: 408 LRWPSTVAPFDVHLV-IANKDAQARAGATALAADLDRLGVEVLLDDRQASPGVKFKDAEL 466

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           LG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 467 LGMPWIVVVG-RGWADGVVELRDRFSGQTREL 497



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/111 (42%), Positives = 69/111 (62%)

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +T   +    SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +
Sbjct: 47  VTLTVKGEYSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAA 106

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+    +Y RIF RL ++ + + A SG +GG  S EF+  + +GE      
Sbjct: 107 YHAHREAYQRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRC 157


>gi|185178982|ref|ZP_02964737.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188518276|ref|ZP_03003799.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524364|ref|ZP_03004396.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867791|ref|ZP_03079791.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273755|ref|ZP_03206289.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554280|ref|YP_002284879.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225551615|ref|ZP_03772561.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|259511630|sp|B5ZBT9|SYP_UREU1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|184209266|gb|EDU06309.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188998019|gb|EDU67116.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659957|gb|EDX53337.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660488|gb|EDX53745.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249510|gb|EDY74292.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209541781|gb|ACI60010.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379430|gb|EEH01795.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 472

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 141/416 (33%), Gaps = 69/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
           KG+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  
Sbjct: 35  KGMMVFQPNAWAIWEAIKNQIDLEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFM 94

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK         PT E +  + F++ + SY +LP    Q     R E         
Sbjct: 95  VNQIGDKKLDNPYAIRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL                                                  + EF 
Sbjct: 148 TRPFLR-------------------------------------------------NAEFH 158

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E     + +           D       N +            +          
Sbjct: 159 WQ----ELHAIFASEHEADEFAKTILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I  
Sbjct: 215 IEAMMQDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +G+I P  +A  +I++++I    +       E+I   LS     +F D   + +G 
Sbjct: 274 HADDQGLILPPDIAFNQIAILSIFANKNPQLLTISEQIRNELSD--YRLFEDHSDKGVGY 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + A  ++ G P+ ++VG K +++ +V +  R T  + +++L ++ +       + +
Sbjct: 332 KLAQQEIEGTPICILVGVKELANQQVVLVRRDTHEKINVNLIDLKSTIKKLLLDIK 387


>gi|111225872|ref|YP_716666.1| prolyl-tRNA synthetase [Frankia alni ACN14a]
 gi|123337919|sp|Q0RBM4|SYP_FRAAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|111153404|emb|CAJ65160.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Frankia alni ACN14a]
          Length = 468

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 135/426 (31%), Gaps = 77/426 (18%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F    Q+    AE+A +  +  T +I           P G    + + A +       GA
Sbjct: 11  FPRWYQDVLAKAELADNGPVRGTMVIR----------PYGYAIWERMQADVDARIKAAGA 60

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSH 121
           +    P       L  E+   + +  E+  +        ++ ++  PT E ++ +     
Sbjct: 61  VNAYFPLFIPESYLRREAEHVEGFSPELAVVTIGGGKELEEPVVVRPTSETIIGEY---- 116

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                       +    +RD       ++                               
Sbjct: 117 ----------LAKWTQSYRD-----LPLL------------------------------- 130

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                 L   +  +R E  P     S EF  L   G T      +   +        + D
Sbjct: 131 ------LNQWANVVRWELRPRLFLRSSEF--LWQEGHTAHVDEAEAAAYARRIALEVYRD 182

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            ++    +  +                    E      + +++      G  ++      
Sbjct: 183 FLTDVLAIPVFIGTKTRKERFAGATN-TMTCEGMMGDGKALQMATSHELGQNFARAFDID 241

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F GADG  H     S+G  + R+V  +I +  D  G+  P  +AP ++ ++ ++  D+  
Sbjct: 242 FLGADGAKHLAWTTSWG-SSTRMVGGLIMAHGDDNGLRIPPRLAPTQVVVLPVR-DDETV 299

Query: 362 RDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +I A L+  G  V  D   G   G +   A++ G P++V VG + ++   V +  
Sbjct: 300 VAKAREIAAALTDAGLRVQVDARSGLSFGRRVTDAEIKGIPVRVEVGPRDLAAGNVTLVR 359

Query: 421 RLTGIR 426
           R T ++
Sbjct: 360 RDTSVK 365


>gi|188024082|ref|ZP_02996824.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188019126|gb|EDU57166.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
          Length = 472

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 141/416 (33%), Gaps = 69/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
           KG+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  
Sbjct: 35  KGMMVFQPNAWAIWEAIKNQIDLEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFM 94

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK         PT E +  + F++ + SY +LP    Q     R E         
Sbjct: 95  VNQIGDKKLDNPYAIRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL                                                  + EF 
Sbjct: 148 TRPFLR-------------------------------------------------NAEFH 158

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E     + +           D       N +            +          
Sbjct: 159 WQ----ELHAIFASEHEADEFAKTILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I  
Sbjct: 215 IEAMMQDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +G+I P  +A  +I++++I    +       E+I   LS     +F D   + +G 
Sbjct: 274 HADDQGLILPPDIAFNQIAILSIFANKNPQLLTISEQIRNELSD--YRLFEDHSDKGVGY 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + A  ++ G P+ ++VG K +++ +V +  R T  + +++L ++ +       + +
Sbjct: 332 KLAQQEIEGTPICILVGVKELANQQVVLVRRDTHEKINVNLIDLKSTIKKLLLDIK 387


>gi|171920903|ref|ZP_02932054.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|171903119|gb|EDT49408.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
          Length = 472

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 141/416 (33%), Gaps = 69/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
           KG+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  
Sbjct: 35  KGMMVFQPNAWAIWEAIKNQIDLEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFM 94

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    DK         PT E +  + F++ + SY +LP    Q     R E         
Sbjct: 95  VNQIGDKKLDNPYAIRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL                                                  + EF 
Sbjct: 148 TRPFLR-------------------------------------------------NAEFH 158

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E     + +           D       N +            +          
Sbjct: 159 WQ----ELHAIFASEHEADEFAKTILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I  
Sbjct: 215 IEAMMQDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +G+I P  +A  +I++++I    +       E+I   LS     +F D   + +G 
Sbjct: 274 HADDQGLILPPDIAFNQIAILSIFANKNPQLLTISEQIRNELSD--YRLFEDHSDKGVGY 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + A  ++ G P+ ++VG K +++ +V +  R T  + +++L ++ +       + +
Sbjct: 332 KLAQQEIEGTPICILVGVKELANQQVVLVRRDTHEKINVNLIDLKSTIKKLLLDIK 387


>gi|299537091|ref|ZP_07050394.1| prolyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727332|gb|EFI67904.1| prolyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 478

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/457 (14%), Positives = 146/457 (31%), Gaps = 88/457 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK+++  +Q+    A++  +  +           G  ++ P G +  +++   +     
Sbjct: 8   FSKWYIETIQK----ADLMDYTPVR----------GCIAFKPDGYEIWEHIQEEMDRR-- 51

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGK----EMLRLADRNDKAMIYGPTHEEVMTDIF 118
                            + E+G  ++Y      E        D    + P     +T+  
Sbjct: 52  -----------------FKETGHRNAYFPMLIPESF-FQKEKDHIEGFSPEL-PWVTEAA 92

Query: 119 RSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              ++    L P +   I   + +                               SY  +
Sbjct: 93  GEQLEERLALRPTSETMIGHLYSN----------------------------WIKSYRDL 124

Query: 178 ---FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 +  +F R   K++P    S     +   +    A   E         M      
Sbjct: 125 PVLINQWANVF-RWEKKTLPFIRTS-----EFLWQEGHTAHVDEADARQETMQMLDIYKE 178

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                  I   +           A      E            + + ++ G   Y GTK+
Sbjct: 179 VVEQVLAIPVYDGQKTPSERFAGAVDTYSIEA--------MMKNGKAVQAGTSHYLGTKF 230

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +   +  +     +  YV   S+G  + R++ +VI    D +G++ P  +AP ++ LI +
Sbjct: 231 AEAFNIKYLNKANQHEYVHTTSWG-TSTRLIGSVIMVHGDEQGLVLPPRIAPTQVVLIPV 289

Query: 355 K--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                +    +  ++I+A L   G  V  DD  +  G +F   +L G P++V +G + + 
Sbjct: 290 GPWKKNPQIMEHLDEIFAALKAKGIRVRLDDSDQSPGYKFNEWELKGVPVRVELGPRDLE 349

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + +  +K R    +  + L  +I       +  +  L
Sbjct: 350 NKQALLKARDEEEKRTVELASIITAIEEELTTMQTRL 386


>gi|150403333|ref|YP_001330627.1| threonyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|166223356|sp|A6VJ50|SYT_METM7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150034363|gb|ABR66476.1| threonyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 622

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 151/447 (33%), Gaps = 56/447 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           ++ EI  ++     G           W P G+   D ++  +       G + +  P + 
Sbjct: 205 KEKEICDYEPSSDAGHFR--------WYPKGKLIRDLLSDYVYNLVVERGGMPVETPVMY 256

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      D +G+   R    N K ++           + +      +++P   Y++
Sbjct: 257 DLQNNAIREHADKFGERQYRFKQGN-KDLMLRFAACFGQFMMKKDMYLLPKHMPLKLYEL 315

Query: 136 QL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E R    G+ R R F M D ++  +  + +  ++             +GLK+ 
Sbjct: 316 STYSFRYEQRGELVGLKRLRAFTMPDMHTVCIDMKQAMEAFEDQLW--------MGLKT- 366

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                    G D    + ++    E   F  ++   F       ++      ++I+E   
Sbjct: 367 ---------GDDFKTPYAIIFRFTED--FFEENKDWFF--GMAKEYKQKYGKDAILEILP 413

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                     +  + DS           I+V     FG              D K H + 
Sbjct: 414 GRKHYWVGKVDMAVVDSFGRPIENPTVQIDVESAERFG--------IVVHDGDKKVHPII 465

Query: 314 MGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +     G++ RV+  ++E+++    + K    P  + P +  +I +    +   +   ++
Sbjct: 466 LHCSPTGSVERVLCGLLENAYLNTLENKPPALPTWLTPIQARVIPVGDKHE---EFALEV 522

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--- 425
             +L   G    +DD  + +G +   A        V++G   +   K+ +  R       
Sbjct: 523 ANKLRASGIRADFDDREDSMGKKVRNAGTDWVNYVVVIGDNEMETGKLTVTIREESELKK 582

Query: 426 --REDMSLEEVINYASHRFSN--NRPV 448
             +E +++EE+I   +    +   RP+
Sbjct: 583 AKKEALTVEELIEKITSDVKDAPKRPL 609


>gi|169828364|ref|YP_001698522.1| prolyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168992852|gb|ACA40392.1| Prolyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 81/177 (45%), Gaps = 3/177 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              + + ++ G   Y GTK++   +  +     +  YV   S+G  + R++ +VI    D
Sbjct: 216 MMKNGKAVQAGTSHYLGTKFAEAFNIKYLNKANQHEYVHTTSWG-TSTRLIGSVIMVHGD 274

Query: 335 GKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +G+I P  +AP ++ LI +     +    +  + I+A L   G  V  DD  +  G +F
Sbjct: 275 EQGLILPPRIAPTQVVLIPVGPWKKNPQIMEQLDAIFAALKAKGIRVRLDDSDQSPGFKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +L G P+++ +G + + +++  +K R    ++ + L  V+       +  +  L
Sbjct: 335 NEWELKGVPVRIELGPRDLENNQALLKARDEDEKQTIELATVVAAIEEELTTMQARL 391



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK+++  +Q+    A++  +  +           G  ++ P G +  +++   +     
Sbjct: 13  FSKWYIETIQK----ADLMDYTPVR----------GCIAFKPDGYEIWEHIQEEMDRRFK 58

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P L     +  E    + +  E+  + +    + ++ +   PT E ++  +
Sbjct: 59  DTGHRNAYFPMLIPESFFQKEKDHIEGFSPELPWVTEAAGEKLEERLALRPTSETMIGHL 118

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + + IKSYR+LP    Q    FR E +     +R+ EFL ++ ++  +  E ++    +M
Sbjct: 119 YSNWIKSYRDLPVLINQWANVFRWEKK-TLPFIRTSEFLWQEGHTAHIDEEDARKETMQM 177

Query: 178 FVSYLRI 184
              Y  +
Sbjct: 178 LDIYKEV 184


>gi|332884684|gb|EGK04941.1| prolyl-tRNA synthetase [Dysgonomonas mossii DSM 22836]
          Length = 493

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/432 (14%), Positives = 152/432 (35%), Gaps = 51/432 (11%)

Query: 25  LMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L+L+  +    + +G     P G    + +   + +                    + E+
Sbjct: 22  LVLKADLAENSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FKET 62

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G  ++Y   +               + E    + F                +   +R + 
Sbjct: 63  GHMNAYFP-LFIPKS--------FLSKEADHVEGFAKECA-----------VVTHYRLKN 102

Query: 144 RP-RFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            P   GV+   +  +++      T E    ++Y     SY  +   +   +  +R E   
Sbjct: 103 DPDGKGVIVDPDAKLEEELIVRPTSETIIWNTYRNWIQSYRDLPILVNQWANVVRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+      E     +          +  +     +   +         + S+
Sbjct: 163 RLFLRTAEFLWQ----EGHTAHATKEEAVEEAEKMLNVYAQFAEEYMAVPVIKGVKSASE 218

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +     E      + ++ G   + G  ++      F   +GK  YV   S+G+ +
Sbjct: 219 RFAGAVDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVKFADKEGKMDYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCD 378
            R++ A+I +  D  G++ P  +APF++ ++ I    +      +  + I   L  +G  
Sbjct: 278 TRLIGALIMAHSDDNGLVLPPKLAPFQVVIVPIYKGAEQLALINEKVDGIVKSLKALGIS 337

Query: 379 VFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   +  G +F+  +L G P+++ +G++ + ++ VE+  R T  +E +S + +  Y
Sbjct: 338 VKYDNADNRKPGWKFSEYELKGVPVRLAMGARDMENNTVEVARRDTLTKETVSCDGLDMY 397

Query: 438 ASHRFSNNRPVL 449
             +   + +  +
Sbjct: 398 IKNLLDDIQANI 409


>gi|51892640|ref|YP_075331.1| prolyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|81826140|sp|Q67PA6|SYP_SYMTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51856329|dbj|BAD40487.1| prolyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 488

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 72/174 (41%), Gaps = 3/174 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   Y G  ++      F   D +  YV   S+G+ + R++ A+I    D
Sbjct: 221 MMKDGKALQAGTSHYLGQNFAKGFEIKFLDRDNQLKYVHTTSWGV-STRLIGALIMVHGD 279

Query: 335 GKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +G+  P  +AP ++ +I +             + ++  L   G  V  D   E  G +F
Sbjct: 280 DRGLALPPRLAPIQVIMIPVGPPKFRDKVMARFDPLFDALKAAGVRVKADLREETPGWKF 339

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              ++ G PL++ +G + V + +  +  R TG +  + L+E +          +
Sbjct: 340 NEWEMRGVPLRIEIGPRDVDNKQCLMVRRDTGEKIPVPLDEAVERVQALLEEIQ 393



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 74/190 (38%), Gaps = 16/190 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     +  R A++  +  +           G   + P G +  + + A + +   
Sbjct: 14  QSEDFSRWYIDVIRKADLMDYTPVR----------GCIVFKPDGYELWERIQAGLDKRFK 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P L     +  E    + +  E+  + +    + ++ +   PT E ++  +
Sbjct: 64  ETGHRNAYFPMLIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLALRPTSETIIGHM 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q    FR E R     +R+ EFL ++ ++   T E ++    +M
Sbjct: 124 YAQWIQSYRDLPVLINQWANVFRWEKR-TLPFLRTSEFLWQEGHTAHATEEEAREETMRM 182

Query: 178 FVSYLRIFHR 187
              Y      
Sbjct: 183 LEVYRDFVET 192


>gi|295397522|ref|ZP_06807604.1| proline--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974252|gb|EFG49997.1| proline--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 502

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 139/422 (32%), Gaps = 69/422 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEML 94
           ++G   + P G    ++      E   + G      P L     +  E+   + +  E+ 
Sbjct: 50  ARGTMIFKPDGFLLWESYKDAFNEMLKKEGIRNAYFPMLIPKHFFEKEADHVEGFAPELP 109

Query: 95  RLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            + +    + ++ +   PT E +  +     I SYR+LP    Q    FR E R     +
Sbjct: 110 WVTEAGEEKLEEPLALRPTSETLFGNAMSDWINSYRDLPMELNQWANVFRWEKR-TLPFI 168

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+ EFL ++ ++     E ++    KM   Y ++          + A     G     E 
Sbjct: 169 RTSEFLWQEGHTAHANEEEARERTMKMLHYYTQLVKE-------VFAMPVYEGQKTPSER 221

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A               F I +   D   I +  S         A      NE    +
Sbjct: 222 FAGA------------VDTFSIEAMTKDTKAIQAGTSHYLGQNFAEAFDIKFLNEDNQHT 269

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                   +    +G            M        G                       
Sbjct: 270 YVHTTSWGSSTRLIG-----------AMIMIHGDEQG----------------------- 295

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                  ++ P  VA  ++SLI +     +    +  ++I A LS  G  V  DD     
Sbjct: 296 -------LVLPPRVAGTQVSLIPVGNIKKNPQVLEKLQEIKATLSAAGLRVNLDDSNNSP 348

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSNNRP 447
           G +F  +++ G PL++  G + + +++V IK R    +E  SL+ +++   + RF +   
Sbjct: 349 GYKFNESEVHGVPLRIEFGPRDMENNQVMIKMRDVDGKEAFSLDGDLLAEINTRFDDMHQ 408

Query: 448 VL 449
            L
Sbjct: 409 RL 410


>gi|256370695|ref|YP_003108520.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009487|gb|ACU52847.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
          Length = 488

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 143/411 (34%), Gaps = 51/411 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + +I+      TG   +  P L        E      + KE    
Sbjct: 31  GCMILKPYGFAIWEKIQSILDRILKSTGHENVYFPLLIPKSFLSKEFNHIKGFAKE---- 86

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                           V+T                       +R +      ++  +   
Sbjct: 87  --------------CAVIT----------------------HYRLKNLNNKNLIVDQSSH 110

Query: 157 MKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           + +      T E    +SY +   SY  +       +  +R E  P     + EF  L  
Sbjct: 111 LDEELIVRPTSETIIWNSYKRWINSYRDLPILFNQWANIIRWEMRPRFFLRTSEF--LWQ 168

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G T     K+ ++      N   + + +  SI        ++      EK F    E+ 
Sbjct: 169 EGHTAHSTKKEAINHTKKMLNIYTNFVENFFSIPVIQGIKTSSEKFAGAEKTF--CIESI 226

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + I++    + G  +S      +    GK  YV   S+GI + R++ A+I +  D 
Sbjct: 227 MQDGKSIQIATSHFLGQNFSKAFDVKYTTKKGKKKYVWATSWGI-STRLIGAMIMTHSDD 285

Query: 336 KGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
           KG+I P  +AP +I +I +    +           + A + K G ++ +D       G +
Sbjct: 286 KGLILPPKIAPIQIVIIPVYKTQEQLHLIEKIVFPLKASIEKKGINIKYDKRTYYTPGWK 345

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F   ++ G P+++ +G K +    VE+  R T  ++++S++++  +     
Sbjct: 346 FNEYEIQGIPIRITIGKKDLDRGTVEVVRRDTLEKKNISIKKLETFIPKLL 396


>gi|332159170|ref|YP_004424449.1| prolyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034633|gb|AEC52445.1| prolyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 480

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 143/427 (33%), Gaps = 61/427 (14%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           ++++   G++      KG+  WLP G K + N+   I          EM           
Sbjct: 16  NQVIEEAGILDKRYPVKGMNVWLPYGLKIMRNIERFI--------HEEM----------- 56

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             +G  +     ++   +   +A        EV       H                   
Sbjct: 57  ERTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFWVTHAGH------------------- 97

Query: 141 DELRPRFGVMR-SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            E      ++R + E  M   ++                   L+++  + +        +
Sbjct: 98  -EPLDVRLILRPTSETAMYSMFALW---------IRSHADLPLKVYQIVNV-YRYETKHT 146

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P+           A T       ++  +   +   +     +     I ++        
Sbjct: 147 RPLIRVREISRFFEAHTAHVDFEDAERQIREDLEIFDNLMKKLAIAYIISKRPEWDKFPG 206

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +                   R +++G +  +   ++   +  ++  DG   YV   ++G+
Sbjct: 207 AYYSLGAEV------VMPDGRTLQIGTMHNYKQNFAKAYNIMYEKEDGTHDYVHQTTFGM 260

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGC 377
            + R++AAVI    D +GI+ P ++AP ++ ++ I     ++      ++I   L   G 
Sbjct: 261 -SERLLAAVIAIHGDDRGIVLPPTIAPIQVVIVPIPKKGSEEEVYKYAKEIEEELKMAGI 319

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  D   ++ G +F   +L G P++V VG   V +S V +  R    +  +  EE+++ 
Sbjct: 320 RVHLDLRDKRPGWKFYDWELKGVPVRVEVGPIDVQNSTVVLARRDKLEKITVKREELVDR 379

Query: 438 ASHRFSN 444
               F +
Sbjct: 380 VRELFDD 386


>gi|317127978|ref|YP_004094260.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315472926|gb|ADU29529.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 478

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 3/177 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   Y GTK++      +   + K   V   S+G  + R++ +VI    D
Sbjct: 211 MMKDGKAVQAGTSHYLGTKFAEAFDIKYLTRENKHENVHTTSWG-TSTRLIGSVIMVHGD 269

Query: 335 GKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +G++ P  +AP ++ LI +     +    D  ++I+  L   G  V  DD  +  G +F
Sbjct: 270 EQGLVLPPRIAPTQVVLIPVGPWKKNPAIIDKLDEIFVALKVKGIRVRLDDSDQSPGYKF 329

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +L G P+++ +G + +  ++V +K R    +  +SL+ V+       +  +  L
Sbjct: 330 NEWELKGVPVRIELGPRDLEGNQVMMKARDEREKLVVSLDTVVESIEKELNTMQTRL 386



 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK+++  +Q+    A++  +  +           G  ++ P G +  +++   +     
Sbjct: 8   FSKWYIDTIQK----ADLLDYTPVR----------GCIAFKPDGYELWEHIKEEMDSRFK 53

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P L     +  E    + +  E+  + +    + ++ +   PT E ++  +
Sbjct: 54  ETGHRNAYFPMLIPETFFQKEKDHIEGFSPELPWVTEAAGEKLEERLALRPTSETMIGHL 113

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   IKSYR+LP    Q    FR E +     +R+ EFL ++ ++  +  E ++    +M
Sbjct: 114 YSKWIKSYRDLPVLINQWANVFRWEKK-TLPFIRTSEFLWQEGHTAHVDEEDARKETMQM 172

Query: 178 FVSYLRIFHRLGLKSIPMR 196
              Y  +    GL +IP+ 
Sbjct: 173 LNIYKEVVE--GLLAIPVY 189


>gi|298709340|emb|CBJ31276.1| ATP binding / tRNA ligase/ threonine-tRNA ligase [Ectocarpus
           siliculosus]
          Length = 470

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 3/186 (1%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            +++   RD  +   KL L + +      G+  W P G      +    + +    G   
Sbjct: 274 RMVEAKRRDHRVLGKKLDLFS-LQEDAGGGLVFWHPKGSTIRMLIENFWKAQHLDKGYEL 332

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + + DLW  SG +D Y   M    D         P +      +++  ++SYR L
Sbjct: 333 LYTPHVANLDLWKTSGHFDFYKDGMFDQMDVEGDQYQIKPMNCPFHCLVYKDDLRSYREL 392

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + ++   +R E      G+MR R F   DA+ F L PE  +     +      I  R
Sbjct: 393 PIRWAEMGTVYRYERSGTLHGLMRVRGFTQDDAHIFCL-PEQLEDEIISVLDLTEAILSR 451

Query: 188 LGLKSI 193
            G    
Sbjct: 452 FGFDRR 457


>gi|313247748|emb|CBY15872.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 6/215 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +++     +   RD      +  L T      S G   WLP G    + +   IR E 
Sbjct: 288 QLTEWVNFQEEAKKRDHRRIGTQQELWT--FDPVSAGSCFWLPRGAVIYNRLQDFIRSEY 345

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + +++LW  SG +  Y  +M      +DK     P +      +F S 
Sbjct: 346 RKRGFKEVVTPNIFNSELWKTSGHWQHYEDDMFTFKVEDDK-WAMKPMNCPGHCVMFGSR 404

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SY+ LP  F    +  R+EL     G+ R R F   DA+ F    E  +         
Sbjct: 405 LRSYKELPLRFADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCAR-EQIEGEITAALDF 463

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  ++   G     +   + P            A+
Sbjct: 464 FKFVYDTFGFTF-ELNLSTRPEKYLGEVADWDEAE 497


>gi|103486717|ref|YP_616278.1| prolyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|122985087|sp|Q1GTS7|SYP_SPHAL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|98976794|gb|ABF52945.1| prolyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
          Length = 527

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 122/423 (28%), Gaps = 87/423 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++       G      P       +  E+   D + KEM  +
Sbjct: 54  GCMVIKPWGYGIWERIQTVMDAAIKDAGVQNAYFPLFIPLSFFEKEADHVDGFAKEMAVV 113

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ +I  PT E V+       ++S+R+LP    Q     
Sbjct: 114 THHRLIADSKGKLVPDPEAKLEEPLIVRPTSETVIGAAMSRWVQSWRDLPLKVNQWANVV 173

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       MR+R FL    +   L  EG                           A+ 
Sbjct: 174 RWE-------MRTRMFLRTSEF---LWQEG-----------------------HTAHADR 200

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                +      +     E  +       + P            S+ +            
Sbjct: 201 DDAMAETLRALEMYRSFAEDVLAMPVIAGEKPENERFPGAVATYSIEA------------ 248

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                               + ++ G   Y GT ++      ++  DG        S+G 
Sbjct: 249 ---------------MMQDGKALQAGTSHYLGTGFAEAAGIRYQDRDGGHSLCHTTSWG- 292

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG 376
            + R++  VI +  D  G+  P  +AP +I ++ +      D    D C  + +RL  + 
Sbjct: 293 TSTRMIGGVIMTHGDDDGLRCPPRIAPHQIVIVPMLRDNGEDAAILDYCRDLESRLKALD 352

Query: 377 -----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  D    +  ++       G P+ V VG + V+   V +  R    +E   L
Sbjct: 353 AFGEPVRVLLDTGANKAQTKRWGWVKKGAPIIVEVGPRDVAGGNVAVIRRDRLYQESGKL 412

Query: 432 EEV 434
              
Sbjct: 413 NSA 415


>gi|312137209|ref|YP_004004546.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Methanothermus
           fervidus DSM 2088]
 gi|311224928|gb|ADP77784.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Methanothermus
           fervidus DSM 2088]
          Length = 608

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 144/444 (32%), Gaps = 52/444 (11%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P + E   H  ++R   I  +      G   W P G+   D ++  +     + GA+ +
Sbjct: 187 KPSEKE-PPHIKLMREKKIADYEPSADIGHLRWYPKGKLIRDLLSDYVYSLVTKYGAMVV 245

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +            + +G+   R+   N K ++           I       +++LP
Sbjct: 246 ETPIMYDLSDKAIRVHAEKFGERQYRI--HNKKELMLRYACCFGAFKILADSFLRWKDLP 303

Query: 130 FTFYQIQL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
              Y++    FR E R    G+ R R F M D ++     + +   + K     L+    
Sbjct: 304 VKIYELSTYSFRLEQRGEVVGLKRLRSFTMPDLHTVCRDMQQALEEFEKQVEMCLKAAED 363

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L L                              +F                    I+   
Sbjct: 364 LKLNH--------------------------KAIFRFTKDFYEENKEWIKSLSRKINEPI 397

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           ++E             +    DSL      S   I+V              + ++   DG
Sbjct: 398 LIELLPKRKHYWVAKIDFAAVDSLGRPIENSTVQIDVES--------GKRFNISYLDEDG 449

Query: 308 KDHYVQMGSYGIG--AMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVC 361
           K+ +  +          RV+ +++E +     + K  + P  ++P  + +I +    +  
Sbjct: 450 KNKFPVILHCSPTGSIERVICSLLEENAKKINNNKLPMLPVWLSPIHVRVIPV---SEKH 506

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    I  +++  G     DD  E +  +   A     P   ++G K +S+ ++ +  R
Sbjct: 507 VDYAIDIVKKINSYGIRADIDDTNETVSKKVRNAGKEWIPYVAVIGDKEISEDELTVTIR 566

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               + ++ LEE+I    ++  N 
Sbjct: 567 ENDEKRELKLEELIEIVKNKLKNK 590


>gi|300778952|ref|ZP_07088810.1| proline--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300504462|gb|EFK35602.1| proline--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 545

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/429 (14%), Positives = 144/429 (33%), Gaps = 52/429 (12%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +      +G     P G    +     +R+E ++                + 
Sbjct: 70  NELVVKADLAENSGVRGCMVIKPYGYAIWEK----MRDEMDKK---------------FK 110

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+G  ++Y   +       +                F                +   +R 
Sbjct: 111 ETGHVNAYFP-LFVPKSLFEAEEKNAEG--------FAKECA-----------VVTHYRL 150

Query: 142 ELRPRFG--VMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +  P     ++   +  +++      T E    ++Y     SY  +   +   +  +R E
Sbjct: 151 KTDPDNPSKLIVDPDAKLEEELIVRPTSEAIIWNTYKNWIQSYRDLPILINQWANVVRWE 210

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   + EF+      E     +          +        + N +          
Sbjct: 211 MRTRLFLRTAEFLWQ----EGHTAHATKEEAVEEAEKMNKVYADFAENFMAIPVIQGLKT 266

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            S+           E      + ++ G   + G  ++      F   +GK  +    S+G
Sbjct: 267 PSERFAGADETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTNKEGKIEHAWATSWG 326

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKV 375
             + R++ A+I +  D  G++ P ++AP ++ ++ I   ++      +    I A+L   
Sbjct: 327 -TSTRLMGALIMTHSDDFGLVLPPTLAPIQVVIVPIFKGEEQLEQISEVALDIQAKLRAK 385

Query: 376 GCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D D   + G +FA  +L G P+++ +G + + +  VEI  R    +E  S+E +
Sbjct: 386 GISVKFDNDTQNKPGWKFAEYELKGVPVRIAMGPRDLENKSVEIARRDNLTKEVRSIEGL 445

Query: 435 INYASHRFS 443
            +Y      
Sbjct: 446 DSYIEDLLK 454


>gi|321309543|ref|YP_004191872.1| threonyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319801387|emb|CBY92033.1| threonyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 501

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 132/418 (31%), Gaps = 43/418 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ----HSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + L        +     H+ + +   I         G+  WL  G    + +   I   Q
Sbjct: 62  FLLEWKDSKKEEVHEKDHRGIGKNLRIFDFDPLIGAGMPIWLERGHLIKEEIKNYINRIQ 121

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRS 120
              G   +S P L   +L+  SG +D Y + M   L+   +   I  P        +++ 
Sbjct: 122 RNNGIAIVSTPELGKKELYQTSGHWDHYQENMFPSLSLEGEGEYILRPMTCPHHIILYKK 181

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +  + LP  F +     R E     FG+ R+R   + D + F         S +K+F 
Sbjct: 182 QKRHEKQLPIAFGENARLHRYEYSGGLFGLERTRCMELIDTHLFCA-KNQIFESLDKVFG 240

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I     ++   +                   D      F   + +         +F
Sbjct: 241 IIQDIKEAFEIEYHSIVLSLR--------------DVNNKDKFFDDENLWSLSEGSLKEF 286

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-- 297
            D   +  +                +  F     + ++     ++  I      +SLP  
Sbjct: 287 LDSKKIEYVEGI------------GDAAFYGPKIDFQIETYAGKIITISTIQLDFSLPQK 334

Query: 298 MSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G D KDH   M   GI   +    A +   ++G    W   ++P +++LI +  
Sbjct: 335 FELKYTGMDEKDHEPIMIHVGIIGTLERFIAYLLERNNGWLPFW---LSPTQVTLIPVNR 391

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA-DLLGFPLQVIVGSKFVSD 413
                 D+  K+          V  D  G  +G + A A +   F   + VG K   +
Sbjct: 392 DS--HLDSVRKLENFYRSKNIRVEVDQSGLSLGKKIAKAIEKRSFGFMI-VGDKEAQE 446


>gi|318079886|ref|ZP_07987218.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 368

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 121/402 (30%), Gaps = 51/402 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           RD +   H+L    G+         G+   LP G      +   +R  +   G   +  P
Sbjct: 8   RDHD--HHRLGRALGLYGTDPLLGAGLPYLLPDGASVRHALEEYVRGLEVADGYQHVHSP 65

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L   +L+V SG +  Y  +M    +   +  +  P+       I+R+  +SYR LP   
Sbjct: 66  VLGKQELYVRSGHWAHYRADMFPPMEVGGEHFVLRPSLCPHHALIYRAQARSYRELPLRI 125

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++   FR E      G+ R R   + DA+ F   PE                +  LGL 
Sbjct: 126 AELGGMFRAEPSGTLGGLTRVRAIHLNDAHLFCA-PESLAGEVAGALALIRTAYRALGLA 184

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               R                    GE   +   + +     +   +      L+   E+
Sbjct: 185 PSRYRLSL----------------PGEDAKYALAEGVWERSAAALAEALAGAGLD--WEE 226

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                A      + +  D+      +S    +      FG  Y           DG +  
Sbjct: 227 ERGEAAFYGPKIDVQARDAAGREFTLSTVQADFHQPTAFGLDYRAA--------DGSRPR 278

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  V A +   H G    W           + +    +   +A E    
Sbjct: 279 PVMVHRSVLGSLERVLARLIEVHGGAFPAWLAP------VQVGVVPVGEEQEEAAESFVR 332

Query: 371 RLSKVGCDVFWDDMGE-----QIGSQFAVADLLGFPLQVIVG 407
           R    G                + ++   A L   P   ++G
Sbjct: 333 RCRAAGLRA----RRYPAHAGTLAARVRQARL--VPHLAVLG 368


>gi|148675291|gb|EDL07238.1| threonyl-tRNA synthetase-like 2, isoform CRA_a [Mus musculus]
          Length = 365

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 75/209 (35%), Gaps = 7/209 (3%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A+   H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 148 EKFQEEAKSRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNALMDFIREEYHKRNFTE 207

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +
Sbjct: 208 VLSPNMYNSKLWETSGHWQHYSNNMFTF-DVEKDTFALKPMNCPGHCLMFAHRPRSWREM 266

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F    +  R+EL     G+ R R F   DA+ F +  E  +            ++  
Sbjct: 267 PVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCM-VEQIEEEIKGCLHFLQSVYST 325

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            G     +   + P       E    A+ 
Sbjct: 326 FGFSF-QLNLSTRPEHFLGEIEIWDEAER 353


>gi|14601997|ref|NP_148542.1| prolyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|74581728|sp|Q9Y9G0|SYP_AERPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|5106029|dbj|BAA81340.1| prolyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 485

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 148/449 (32%), Gaps = 70/449 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S  F          AE+  +             KG+  W+P G +    V  ++R   
Sbjct: 9   KWSSDFPRWFDWVIETAEVYDYG--------RYPVKGMGVWMPYGFQIRRRVLEVVRGLL 60

Query: 62  NRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           + TG  E+  P L    L   ES     +  E+  +                        
Sbjct: 61  DSTGHEEVLFPLLIPEHLLRRESEHIRGFEGEVYWVTHGG-------------------- 100

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                              R+EL  +  +  + E  +    +F         SY ++   
Sbjct: 101 -------------------REELDVKLALRPTSETSITYMETF------WIKSYRQLPKK 135

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y ++      ++   R            E   + ++ E     ++  +   I      FD
Sbjct: 136 YYQVVSIFRYETKATRPMIRLREVTTFKEAHTVHESFED----AERQVLEAIEVYKAIFD 191

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            ++    I ++      A +                   R +++G + + G  ++     
Sbjct: 192 RLLIPYVISKRPEWDKFAGALYTIAFD------TIMPDGRALQIGTVHHLGQSFTRAFDF 245

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ- 359
             +  D +  +    SYG+ + RVVA++I    D +G++ P SVAP ++ +I I   D+ 
Sbjct: 246 RIQMRDERLDHPWQTSYGV-SDRVVASLIAVHGDDRGLVIPPSVAPIQVVVIPITPGDEE 304

Query: 360 ---VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     K    L K G  V  DD   E+ G++F   +  G P++V +G +      
Sbjct: 305 KRGKVLTYTAKAAEALEKAGLRVHVDDREWERPGAKFYYWEAKGVPIRVEIGLREAEQDT 364

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + I  R T  + ++ L E  N      + 
Sbjct: 365 LTIARRDTLEKTEVPLGEAGNRIRELMAQ 393


>gi|288932143|ref|YP_003436203.1| threonyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894391|gb|ADC65928.1| threonyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 618

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 150/437 (34%), Gaps = 57/437 (13%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R  +         G   + P G+     + + + E+    GA+E+  P +      
Sbjct: 198 ELMRRLELADYEEASDSGHLKYYPKGRLVKSLIESFVTEKCVDFGAMEVETPIMYDRAHP 257

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +       +   + +              I  + +  YR+LP   Y++  
Sbjct: 258 TLRKYLERFPARQ----YIIKGDKRDFFLRFAACFGQFLIAANGVIPYRSLPLRMYELTR 313

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++     E +K  + + +   + +   LG+     
Sbjct: 314 YSFRKEQRGELVGLRRLRAFTMPDMHTIVKDMEEAKREFFEQYKLSVEVLKELGI----- 368

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                              +  E  +  +KDF +           D++    ++E W   
Sbjct: 369 -----------------YPEDYEVAIRVTKDFFEEN-KDFIYSLVDVLKKPILIEMWDRR 410

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM- 314
           +            D+L +   +S   I+V +   +G          +    G+     + 
Sbjct: 411 FFYFVLKFEFNFVDALDKASALSTVQIDVENAERYG--------IYYYDEKGEKRTPLIL 462

Query: 315 -GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             S      RV+ A++E +H     GK  + P  ++P ++ +I +    +   D   ++ 
Sbjct: 463 HCSASGAVERVMYALLEKAHMEMEKGKLPMLPVWLSPTQVRVIPV---SERHMDRALEVA 519

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-----LTG 424
             L K    V  DD  E +  +   A     P   ++G K +   K+ +  R        
Sbjct: 520 EVLKKNKIRVDVDDREETVSKKIRDAATEWIPYIAVIGDKELESGKLTVTVRSESTLKEQ 579

Query: 425 IREDMSLEEVINYASHR 441
            R +MS+EE++      
Sbjct: 580 KRVEMSVEELVERIKKE 596


>gi|305663857|ref|YP_003860145.1| threonyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378426|gb|ADM28265.1| threonyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 617

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 137/415 (33%), Gaps = 47/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G   + P     L+ V        N        +    + + +        + +G+ M  
Sbjct: 213 GHMRYEPHATVILEAVMQYSWIVANSLNIPVFRVKGTNMFNVNAEAVKQHAELFGERMYE 272

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSRE 154
           +   ND+  I           I +  + SYR+LP   ++I   +R E R    +  R R 
Sbjct: 273 VRIDNDRY-ILRFAACYQQFSILKDWVLSYRDLPMGMFEIADSYRYEQRGELVLGFRLRR 331

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D +      E +K     +    +               E+  IG     E+  + 
Sbjct: 332 FHMPDLHILTKDLEEAKRIAMIVRNKIVE--------------EARKIGR----EYQAIY 373

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E                   +         +V  +              + D L   
Sbjct: 374 NITED--------FFNTNFEYIVELVRAEGKPVLVVLYPPGLYYWVINVEYIIIDELKRP 425

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRV-----VAAV 328
           + ++   I+VG+   FG KY           +G + H + + +  +G++          V
Sbjct: 426 REIATWQIDVGNAKRFGIKY--------VDENGVERHPIIIHTAILGSVERYIYMVFDTV 477

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             S  + K    P  ++P ++ +I I    +        +   LS+ G  V  DD  E +
Sbjct: 478 ARSESENKPPTLPLWLSPIQVRVIPI---SKETLTYAINVAKELSRHGIRVDIDDRDESL 534

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G +   A +   P  +++G + +    + ++ R  GI+  M ++E I   +   +
Sbjct: 535 GKKIRDAGIEWIPYVIVIGEREMKTGTINVRIRKDGIQRVMHIDEFIKLINEELN 589


>gi|307128623|ref|YP_003880653.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
 gi|306483085|gb|ADM89955.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
          Length = 489

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 142/433 (32%), Gaps = 55/433 (12%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++++LR  +  +   +G     P G    + + +I+      TG   +  P L     + 
Sbjct: 16  NEIILRANIAEKSDVRGCMIIKPYGFSIWEKIKSILDNILKYTGHENVYFPLLIPKSYFS 75

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +                            E      F        +     Y+ +    D
Sbjct: 76  K----------------------------EYNHIKGFAKECAIISHYRLKNYKNKNIIVD 107

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           +              ++D      T E    +SY +   SY  +       +  +R E  
Sbjct: 108 KSS-----------KLEDELIVRPTSETIIWNSYKRWINSYRDLPILFNQWANIIRWERR 156

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 + EF+      E     S          +  +    +  N I           S
Sbjct: 157 TRFFLRTSEFLWQ----EGHTAHSTKKEAINQAKKILNIYTNVLENFIAIPVIQGIKTYS 212

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +           E+     + +++    + G  +S      +    G   YV   S+GI 
Sbjct: 213 EKFAGAEKTYCIESIMQDGKSLQIATSHFLGQNFSKAFDVRYSTEKGNKEYVWATSWGI- 271

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI----YARLSKVG 376
           + R++ A+I +  D  G+I P  +AP +I +I +    +   +  EK+       L K G
Sbjct: 272 STRLIGAIIMTHSDDNGLILPPKIAPIQIVIIPVYKTQE-QLNLIEKLVFPLKKFLEKRG 330

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-- 433
            ++ +D       G +F   ++ G PL++ +G K +    VE+  R T  ++ +S+ +  
Sbjct: 331 INIKYDKRIYYTPGWKFNEYEIKGIPLRITIGKKDIDRGTVEVVRRDTLEKKYISINKLK 390

Query: 434 -VINYASHRFSNN 445
            +I     +  +N
Sbjct: 391 FLIPKILSQIQDN 403


>gi|8039795|sp|Q58597|SYT_METJA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 620

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 139/426 (32%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 216 PGHFRWYPKGKLMRDLLADYVYNLVVNMGAMPVETPIMYDLGNPAIREHADKFGERQYRF 275

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPRF-GVMRSRE 154
              N K ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 276 RQGN-KELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 334

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  E +   + K F   L+    L L    +   +     +    F  +A
Sbjct: 335 FTMPDMHTVCLNLEQAMEEFEKQFWECLKTGDDLNLSYSVIFRFTKDFFDEHRDWFFKIA 394

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                  ++ +    + I+E             +  + DSL   
Sbjct: 395 ----------------------KEYKNKYGKDVILEILPKRKHYWVGKVDIAVIDSLGRP 432

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  I+V          +          +G+ + + +     G++  V   +     
Sbjct: 433 IENPTVQIDVES--------AKRFDIKVHTNEGEIYPIILHCSPTGSIERVLCGLLEKAA 484

Query: 335 -----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   + P  ++P ++ +I +    +   D   K+  +L +      +DD  E + 
Sbjct: 485 IEAEKGNAPMLPVWLSPIQVRVIPVA---ERHYDYALKVAEKLRENNIRADFDDREESVS 541

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN 444
            +   A     P  V++G + +      V I+ + T     +E M+L+E+I       +N
Sbjct: 542 KKIRNAGKEWVPYVVVIGDEEMESDKLTVTIREKSTLKKPYKEKMTLDELIERIKKETAN 601

Query: 445 --NRPV 448
              RP+
Sbjct: 602 YPYRPL 607


>gi|327305829|ref|XP_003237606.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326460604|gb|EGD86057.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 607

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 135/435 (31%), Gaps = 82/435 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 104 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGNSPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +                                                    
Sbjct: 224 SVVRWEFKNPQPF----------------------------------------------- 236

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  +   T+V                 +++++++  I  Q T   
Sbjct: 237 LRTREFLWQEGHTAHLTREEAHTEVLQILQHYAHV-------YEELLAVPVIQGQKTDKE 289

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKDHY- 311
                ++   +   +P     + RGI+ G     G  +S     T +      D K    
Sbjct: 290 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPPL 345

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRD 363
            +   S+G+ + R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 346 HIWQNSWGL-STRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 404

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 405 EIEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 464

Query: 423 TGIRE---DMSLEEV 434
              +E    +S++++
Sbjct: 465 IAGKEGKSSISIKDL 479


>gi|154150426|ref|YP_001404044.1| threonyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|166223354|sp|A7I6P0|SYT_METB6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|153998978|gb|ABS55401.1| threonyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 614

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/432 (15%), Positives = 132/432 (30%), Gaps = 56/432 (12%)

Query: 25  LMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS---AD 78
           LM    ++        G   W+P G+   D +   +       GA  +  P +       
Sbjct: 202 LMRSKELVDYEPASDVGCMRWMPKGKLIRDLMADYVLALLLPYGATPVETPVMYDLGDKA 261

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL- 137
           ++      D +G+   R    N++ M+        M  I R    S   LP   Y++   
Sbjct: 262 IYE---HADKFGERQYRFKS-NNRDMMLRFAACFGMFSIMRDMHISKNTLPMKMYELSTY 317

Query: 138 KFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            FR E +    G+ R R F M D +S       +   + +                    
Sbjct: 318 SFRHEQKGEVIGLKRLRCFTMPDMHSLCTDMPEAMKCFEEQL------------------ 359

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                IG     +F    +T     F           +             ++E  +   
Sbjct: 360 ----AIGWQTGRDF----ETKLVAAFRCTKKFYDENEAWVKKIVKESDCPMLIEILSERV 411

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMG 315
                  +    D            I+V          S   +  +   DG       + 
Sbjct: 412 HYWEAKIDLAAIDGQNRPIENPTVQIDVES--------STRFNIKYFKDDGTPVYPPILH 463

Query: 316 SYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               G++ RV+ A++E+    K    P  ++P +  ++ +    +      ++I   L+ 
Sbjct: 464 CSPTGSVERVICAILENISTQKVPALPTWLSPVQARVVPVA---ERHTAYAQEICDALNA 520

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDM 429
            G     D+  E +G +   A +   P  +++G + ++  K+ +  R         +E M
Sbjct: 521 QGIRCDLDERDESVGKKVREAGMDWVPYVIVIGDEEMASKKLTVTIRRKSEPNKPFKEQM 580

Query: 430 SLEEVINYASHR 441
           + + +     + 
Sbjct: 581 TTDALAATIKNE 592


>gi|319902090|ref|YP_004161818.1| prolyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319417121|gb|ADV44232.1| prolyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 497

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 153/432 (35%), Gaps = 51/432 (11%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           ++L+++  +  Q + +G     P G    + +   + +                    + 
Sbjct: 20  NELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDM-------------------FK 60

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+G  ++Y   ++  +           + E    + F                +   +R 
Sbjct: 61  ETGHVNAYFPLLIPKS---------FLSREAEHVEGFAKECA-----------VVTHYRL 100

Query: 142 ELRPRFGVMRSREFLMKDAY-SFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +  P  G +        +       T E    ++Y     SY  +       +   R E 
Sbjct: 101 KNDPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEM 160

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  + EF  L   G T     ++  +  +   N   +      ++        A  
Sbjct: 161 RTRLFLRTAEF--LWQEGHTAHATREEAEEEAVRMLNVYGEFAEKYMAVPVVKGVKSANE 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                   +    E      + ++ G   + G  ++      F   + K  YV   S+G+
Sbjct: 219 RFAGALNTY--TIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G
Sbjct: 277 -STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLSKIDEKVAGIVAKLKSMG 335

Query: 377 CDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  ++ G P+++++G + + +S +E+  R T  +E  S E + 
Sbjct: 336 ISVKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENSTMEVMRRDTLEKETRSCEGIE 395

Query: 436 NYASHRFSNNRP 447
            Y      + + 
Sbjct: 396 EYIKDLLEDIQA 407


>gi|261403652|ref|YP_003247876.1| threonyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261370645|gb|ACX73394.1| threonyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 620

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 133/419 (31%), Gaps = 46/419 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 216 PGHFRWYPKGKLIRDLLADYVYNLVVDMGAMPVETPIMYDLGNPAIREHADKFGERQYRF 275

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPRF-GVMRSRE 154
              N K ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 276 RQGN-KELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 334

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  + +   + K F   LR    L L    +   +     +    F  +A
Sbjct: 335 FTMPDMHTVCLDLKQAMEEFEKQFWECLRTGDDLNLSYSVIFRFTKDFFDEHRDWFFKIA 394

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                  ++      + I+E             +  + DSL   
Sbjct: 395 ----------------------KEYKSKTGKDIILEILPKRKHYWVGKVDIAVIDSLGRP 432

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  I+V          +   +      +G+ + + +     G++  V   +     
Sbjct: 433 IENPTVQIDVES--------AKRFNIKVHTNEGEIYPIILHCSPTGSIERVLCGLLEKAA 484

Query: 335 -----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   + P  ++P ++ +I I    +   D   K+  +L      V  DD  + + 
Sbjct: 485 IEAERGNAPMLPVWLSPIQVRVIPIA---ERHYDYALKVAEKLKDNKIRVDVDDREDSVS 541

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFS 443
            +   A     P  V++G + +      V ++ + T     +E MSLEE+I        
Sbjct: 542 KKIRNAGRDWIPYVVVIGDEEMESDKLTVTVRKKSTLKKPHKEKMSLEELIELIQKEIE 600


>gi|126651780|ref|ZP_01723982.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591458|gb|EAZ85565.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 483

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 81/177 (45%), Gaps = 3/177 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              + + ++ G   Y GTK++   +  +     +  YV   S+G  + R++ +VI    D
Sbjct: 216 MMKNGKAVQAGTSHYLGTKFAEAFNIKYLNKANQHEYVHTTSWG-TSTRLIGSVIMVHGD 274

Query: 335 GKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +G++ P  +AP ++ LI +     +    +  + I+A L   G  V  DD  +  G +F
Sbjct: 275 EQGLVLPPRIAPTQVVLIPVGPWKKNPQIMEQLDAIFAALKAKGIRVRLDDSDQSPGFKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +L G P+++ +G + + +++  +K R    ++ + L  ++       +  +  L
Sbjct: 335 NEWELKGVPVRIELGPRDLENNQALLKARDEDDKQTIELSTIVAAIEEELTTMQTRL 391



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK+++  +Q+    A++  +  +           G  ++ P G +  +++   +     
Sbjct: 13  FSKWYIETIQK----ADLMDYTPVR----------GCIAFKPDGYEIWEHIQEAMDRRFK 58

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P L     +  E    + +  E+  + +    + ++ +   PT E ++  +
Sbjct: 59  DTGHRNAYFPMLIPESFFQKEKDHIEGFSPELPWVTEAAGEKLEERLALRPTSETMIGHL 118

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + + IKSYR+LP    Q    FR E +     +R+ EFL ++ ++  +  E ++    +M
Sbjct: 119 YSNWIKSYRDLPVLINQWANVFRWEKK-TLPFIRTSEFLWQEGHTAHVDEEDARKETMQM 177

Query: 178 FVSYLRI 184
              Y  +
Sbjct: 178 LEIYKEV 184


>gi|15679452|ref|NP_276569.1| threonyl-tRNA synthetase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|3334360|sp|O27504|SYT_METTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2622569|gb|AAB85930.1| threonyl-tRNA synthetase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 605

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 142/428 (33%), Gaps = 50/428 (11%)

Query: 24  KLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           +LM   G+         G   W P G+   D +   +       GA+ +  P +   +  
Sbjct: 197 RLMREKGLADYEPSADVGHLRWYPRGRLIRDLLADYVYMLVTSEGAMPVETPIMYDLEDE 256

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KF 139
                 + +G+   R+ +R  K ++           I      +++NLP + Y++    F
Sbjct: 257 AIRVHAEKFGERQYRMKNR--KELMLRYACCFGAFRILSDSFLTWKNLPASIYELSTYSF 314

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E +    G+ R R F M D ++     + S   + +     +R    L +    +   
Sbjct: 315 RLEKKGEVVGLKRLRGFTMPDLHTVCADLDQSLEEFARQVEMCMRTGQDLQVNYEVI--- 371

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                      F   AD  E                   +  D I    ++E   +    
Sbjct: 372 -----------FRATADFYEE------------YREWVHEVADKIGKPVLLEILPSRKHY 408

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GS 316
                +    D L          I+V     FG         T+  +D ++    +   S
Sbjct: 409 WIAKMDFAAIDYLGRPIENPTVQIDVESGERFG--------ITYVNSDEEEVNPIILHCS 460

Query: 317 YGIGAMRVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                 RV+ +++E +    D K  + P  ++P ++ ++ I    +   +    + + L 
Sbjct: 461 PTGSIERVICSLLEKTAIEMDEKPPMLPLWLSPTQVRVLPIA---ERHMEYASDLVSELI 517

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                   DD  E +G +   A     P  V++G   +   K+ +  R TG +  M L+E
Sbjct: 518 AADVRADLDDRSETLGKKIRNAAQDWVPYVVVIGDSEME-GKLTVNVRETGEKLQMGLDE 576

Query: 434 VINYASHR 441
           +I      
Sbjct: 577 LIERIRAE 584


>gi|15669383|ref|NP_248192.1| threonyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|1591826|gb|AAB99201.1| threonyl-tRNA synthetase (thrS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 624

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 139/426 (32%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 220 PGHFRWYPKGKLMRDLLADYVYNLVVNMGAMPVETPIMYDLGNPAIREHADKFGERQYRF 279

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPRF-GVMRSRE 154
              N K ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 280 RQGN-KELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 338

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  E +   + K F   L+    L L    +   +     +    F  +A
Sbjct: 339 FTMPDMHTVCLNLEQAMEEFEKQFWECLKTGDDLNLSYSVIFRFTKDFFDEHRDWFFKIA 398

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                  ++ +    + I+E             +  + DSL   
Sbjct: 399 ----------------------KEYKNKYGKDVILEILPKRKHYWVGKVDIAVIDSLGRP 436

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  I+V          +          +G+ + + +     G++  V   +     
Sbjct: 437 IENPTVQIDVES--------AKRFDIKVHTNEGEIYPIILHCSPTGSIERVLCGLLEKAA 488

Query: 335 -----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   + P  ++P ++ +I +    +   D   K+  +L +      +DD  E + 
Sbjct: 489 IEAEKGNAPMLPVWLSPIQVRVIPVA---ERHYDYALKVAEKLRENNIRADFDDREESVS 545

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN 444
            +   A     P  V++G + +      V I+ + T     +E M+L+E+I       +N
Sbjct: 546 KKIRNAGKEWVPYVVVIGDEEMESDKLTVTIREKSTLKKPYKEKMTLDELIERIKKETAN 605

Query: 445 --NRPV 448
              RP+
Sbjct: 606 YPYRPL 611


>gi|313619135|gb|EFR90924.1| prolyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 145

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 1/146 (0%)

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           AT    +G+   + MG YGIG  R+++A+ E S+D  G++W   ++PF + LI +    +
Sbjct: 1   ATILDENGRAQPIIMGCYGIGLSRILSAIAEQSNDENGLVWDKQISPFDLHLIPVNMKSE 60

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E +Y  L K G  V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K
Sbjct: 61  EQVAFAESLYDSLQKAGFSVLIDDRTERAGVKFADADLIGLPIRITVGKK-AAEGIVEVK 119

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R TG   ++  +E++N     F + 
Sbjct: 120 IRKTGEMIEVRQDELLNTLPILFGDK 145


>gi|254973701|ref|ZP_05270173.1| prolyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091091|ref|ZP_05320569.1| prolyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255312746|ref|ZP_05354329.1| prolyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515507|ref|ZP_05383183.1| prolyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255648599|ref|ZP_05395501.1| prolyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|306518723|ref|ZP_07405070.1| prolyl-tRNA synthetase [Clostridium difficile QCD-32g58]
          Length = 481

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D
Sbjct: 222 MMHDGKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSD 280

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
            +G++ P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F 
Sbjct: 281 NRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKTKGVAVEVDDRDNYTTGWKFN 340

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             ++ G P++V +G K + +++  +  R T  ++ M LE + +     F
Sbjct: 341 EWEMKGAPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLF 389


>gi|118566325|gb|ABL01534.1| tRNA synthetase [Mycosphaerella fijiensis]
          Length = 182

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 6/187 (3%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD               HQ S G   +LP G    +++ A ++EE  R G  E++ P + 
Sbjct: 1   RDHRKIGQ--DQELFFFHQMSPGSAFFLPHGMIIYNSLMAYLKEEYWRRGYQEVASPNMY 58

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++ LW +SG +  Y ++M    D         P +      +F    +SYR LP      
Sbjct: 59  NSALWKQSGHWQHYHEDMFTF-DVEKDKWALKPMNCPGHCLLFAHRERSYRELPMRIADF 117

Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
            +  R+E      G+ R R F   D + F  T    +   N +F   + ++ R G K   
Sbjct: 118 GILHRNEASGALTGLTRVRRFQQDDTHIF-CTEAQIEQEINGLFDFMMAVYGRFGFKFR- 175

Query: 195 MRAESGP 201
           M+  + P
Sbjct: 176 MKLSTRP 182


>gi|288561385|ref|YP_003424871.1| threonyl-tRNA synthetase ThrS [Methanobrevibacter ruminantium M1]
 gi|288544095|gb|ADC47979.1| threonyl-tRNA synthetase ThrS [Methanobrevibacter ruminantium M1]
          Length = 608

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 134/409 (32%), Gaps = 43/409 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   W P G+   D +   +       GA+ +  P                +G+   + A
Sbjct: 216 GNLKWYPKGRLVRDLLADYVYNFVVDLGAMPIETPIFYDLANDAIREHAAKFGERQYKTA 275

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPRF-GVMRSREF 155
            + D  ++           +      +++NLP   Y++    FR E R    G+ R R F
Sbjct: 276 TKKD--LMLRFACCFGAFRVLGDSFLTWKNLPAKVYELSTYSFRFEKRGEVVGLKRLRAF 333

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            M D +SF      +   ++                   M  ++G           V  D
Sbjct: 334 TMPDMHSFCADMPQALEEFDAQVD---------------MCVQTG-----------VDLD 367

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                +F + +                I    ++E         S   +    D L    
Sbjct: 368 VNYEAIFRATEDFYEENKEWMEATAKRIGKPLLLEILPERKHYWSCKIDFAAIDYLGRPI 427

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-- 333
                 I+V     FG +Y           +   + + +     G++  V   +  +   
Sbjct: 428 ENPTVQIDVESGKRFGIEYIDE-------EENPQNPIILHCSPTGSVERVICSLLENTAK 480

Query: 334 -DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            DGK  + P  ++P ++ ++ I    +   +   ++  +++     V  D+  +++G + 
Sbjct: 481 EDGKAPMLPTWLSPSQVRILPIG---EKHLEYANQLADKIAAENIRVDLDNSDDRVGKKI 537

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             A     P  +++G K V +    +  R +G + DM+ EE+I     +
Sbjct: 538 RSASKEWVPYIIVIGDKEVENDVYSVTVRESGEKVDMTAEELIAEVKAK 586


>gi|71899287|ref|ZP_00681448.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71730913|gb|EAO32983.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 261

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K   ARGIEVGH+F  G KY+  M AT     GK   + MG YGIG  R+VAA IE +HD
Sbjct: 95  KICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRIVAAAIEQNHD 154

Query: 335 GKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GIIWP  +AP+++++  I    D V   A E + A L     D   DD G + G  FA
Sbjct: 155 VAGIIWPAPIAPWQVAVCVINPKKDPVIIAAAELLLAELQSADVDTVLDDRGLRPGVMFA 214

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             +L+G P +++V  + ++    E + R T + E++    ++     
Sbjct: 215 DMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENLDKTTLLTRIKA 261


>gi|256810117|ref|YP_003127486.1| threonyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793317|gb|ACV23986.1| threonyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 618

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 142/426 (33%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 214 AGHFRWYPKGKLIRDLLADYVYNMVVNLGAMPVETPIMYDLGNPAIREHADKFGERQYRF 273

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPRF-GVMRSRE 154
              N K ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 274 RQGN-KELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 332

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  + +   + K F   L+    L L    +   +     +    F  +A
Sbjct: 333 FTMPDMHTVCLDLKQAMEEFEKQFWECLKTGDDLDLSYSVIFRFTKYFFEEHRDWFFKIA 392

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                  ++ +    + I+E             +  + DSL   
Sbjct: 393 ----------------------KEYKNKYGKDVILEILPKRKHYWVGKVDIAVIDSLGRP 430

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  I+V          +   +      +G+ + + +     G++  V   +     
Sbjct: 431 IENPTVQIDVES--------AKRFNIKVHTNEGEVYPIILHCSPTGSIERVLCGLLEKAA 482

Query: 335 -----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                GK  + P  ++P ++ +I +    +   D   KI  +L +      +DD  + + 
Sbjct: 483 IEAEKGKAPMLPVWLSPIQVRVIPVA---ERHYDYALKIAEKLRENNIRADFDDREDSVS 539

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN 444
            +   A     P  V+VG + +      V ++ + T     +E M+L+E+I+      +N
Sbjct: 540 KKIRNAGKEWIPYVVVVGDEEMDSGELTVTVREKSTLKKPHKEKMTLDELIDKIKKETAN 599

Query: 445 --NRPV 448
              RP+
Sbjct: 600 YPYRPL 605


>gi|302518216|ref|ZP_07270558.1| LOW QUALITY PROTEIN: threonyl-tRNA synthetase [Streptomyces sp.
           SPB78]
 gi|302427111|gb|EFK98926.1| LOW QUALITY PROTEIN: threonyl-tRNA synthetase [Streptomyces sp.
           SPB78]
          Length = 448

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 115/384 (29%), Gaps = 46/384 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           RD +   H+L    G+         G+   LP G      +   +R  +   G   +  P
Sbjct: 8   RDHD--HHRLGRALGLYGTDPLLGAGLPYLLPDGASVRHALEEYVRGLEVADGYQHVHSP 65

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L   +L+V SG +  Y  +M    +   +  +  P+       I+R+  +SYR LP   
Sbjct: 66  VLGKQELYVRSGHWAHYRADMFPPMEVGGEHFVLRPSLCPHHALIYRAQARSYRELPLRI 125

Query: 133 YQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++   FR E      G+ R R   + DA+ F   PE                +  LGL 
Sbjct: 126 AELGGMFRAEPSGTLGGLTRVRAIHLNDAHLFCA-PESLAGEVAGALALIRTAYRALGLA 184

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               R                    GE   +   + +     +   +      L+   E+
Sbjct: 185 PSRYRLSL----------------PGEDAKYALAEGVWERSAAALAEALAGAGLD--WEE 226

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
                A      + +  D+      +S    +      FG  Y           DG +  
Sbjct: 227 ERGEAAFYGPKIDVQARDAAGREFTLSTVQADFHQPAAFGLDYRAA--------DGSRPR 278

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  V A +   H G    W           + +    +   +A E    
Sbjct: 279 PVMVHRSVLGSLERVLARLIEVHGGAFPAWLAP------VQVGVVPVGEEQEEAAESFVR 332

Query: 371 RLSKVGCD------VFWDDMGEQI 388
           R    G           D  G + 
Sbjct: 333 RCRAAGLRGADVPGARGDPRGARP 356


>gi|302505226|ref|XP_003014834.1| hypothetical protein ARB_07395 [Arthroderma benhamiae CBS 112371]
 gi|291178140|gb|EFE33931.1| hypothetical protein ARB_07395 [Arthroderma benhamiae CBS 112371]
          Length = 624

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 130/420 (30%), Gaps = 79/420 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 104 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGNSPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +          FL    + +                                 
Sbjct: 224 SVVRWEFKNPQP------FLRTREFLWQ-------------------------------- 245

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                      H   +  +   T+V                 +++++++  I  Q T   
Sbjct: 246 ---------EGHTAHLTREEAHTEVLQILQHYAHV-------YEELLAVPVIQGQKTDKE 289

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKDHY- 311
                ++   +   +P     + RGI+ G     G  +S     T +      D K    
Sbjct: 290 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPPL 345

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRD 363
            V   S+G+ + R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 346 HVWQNSWGL-STRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 404

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 405 EIEAIATVLSAAGVRVEVDRRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 464


>gi|297280760|ref|XP_002808297.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional aminoacyl-tRNA
            synthetase-like [Macaca mulatta]
          Length = 1527

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/456 (15%), Positives = 135/456 (29%), Gaps = 81/456 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  H   G Y   P      + +         + G    
Sbjct: 1024 EAKKEENLADWYSQVITKSEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAGIKKLGVENC 1083

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEM-------LRLADRNDKAMIYGPTHE-----EVMTD 116
              P   S   L  E      +  E+         +       +    T        VM  
Sbjct: 1084 YFPMFVSQGALEKEKTHIADFAPEVSELLFYFFAVTYSLKGEIKPXMTVSIFPCLSVMYP 1143

Query: 117  IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
             +   ++S+R+LP    Q     R E +     +R+REFL ++ +S   T E +     +
Sbjct: 1144 AYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQ 1203

Query: 177  MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            +   Y +++    L +IP+                V     E + F   D+         
Sbjct: 1204 ILDLYAQVYEE--LLAIPV----------------VRGRKTEKEKFAGGDYT------TT 1239

Query: 237  TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +     S  +I    +           E +F+   + K    +     + +   T+   
Sbjct: 1240 VEAFISASGRAIQGGTSHHLGQNFSKMFEIVFE---DPKTPGEKQFAYQNSWGLTTRTIG 1296

Query: 297  PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN--- 353
             M+       G                              ++ P  VA  ++ +I    
Sbjct: 1297 VMTMVHGDNMG------------------------------LVLPPRVACVQVVIIPCGI 1326

Query: 354  ----IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGS 408
                 +   +     C     RL  V   V  D       G +F   +L G P+++ VG 
Sbjct: 1327 TNALSEEDKEALIAKCNDYRRRLLNVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGP 1386

Query: 409  KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +   +     R TG +  ++  E          +
Sbjct: 1387 RDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILED 1422


>gi|26554256|ref|NP_758190.1| prolyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|81846191|sp|Q8EUW7|SYP_MYCPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|26454265|dbj|BAC44594.1| prolyl aminoacyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 470

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/449 (15%), Positives = 158/449 (35%), Gaps = 84/449 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++  I++    +A +  + L+          KG   + P G      +     +   
Sbjct: 11  FSKWYTSIIE----NANLVDYGLV----------KGTIMFKPYGFAIWKRIQEEFNKILV 56

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
                E+  P L   ++   E    + +  E+ +++     + +  ++  PT E    + 
Sbjct: 57  SLNTAEVCFPMLIPYSEFMKEKEHVEGFNPELFKVSHLGEKKLEDELVIRPTSEISFCNY 116

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F+ +IKSY +LP    Q    FR E         +R FL    + +              
Sbjct: 117 FKKNIKSYNDLPCILNQWGSVFRVEKN-------TRPFLRTSEFLWQEQ----------- 158

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                             V AD  E   F         +     
Sbjct: 159 --------------------------------HAVFADKKEAFDFSITM-----VNEYKK 181

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +D +S+  ++ + T         +   +   +P+ +      ++     Y GT ++  
Sbjct: 182 FVNDYLSIAVLMGEKTENERFAGADNTFTIEALMPDGQV-----LQSATSHYLGTNFAKS 236

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               ++  +     +   S G+ + R++ A+I S  D  G++ P  +AP + +++     
Sbjct: 237 YDLKYQTKNNNYDLMFQTSAGL-STRIIGAIIMSHSDNNGLVLPFKIAPIQFAIVTSNEV 295

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++   +  + IY  L       ++  + + +G Q    ++ G P Q+I+G K + ++ + 
Sbjct: 296 NKDSDEL-KAIYKNLFGYKYQTYF--VEKSLGLQLQENEIKGIPFQLILGKKEIENNTIT 352

Query: 418 IKHRLTGIREDMSLEEV-INYASHRFSNN 445
           I  R T  ++++S +E   N+  +     
Sbjct: 353 IYRRDTREKQNISFKEFNQNFIENLIKEY 381


>gi|330888316|gb|EGH20977.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 250

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 39/279 (13%)

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            K          L ++   G K I ++  + P     S E    A+T       S     
Sbjct: 2   MKAESAAFIKLTLDVYADFGFKDIELKLSTRPEKRVGSDELWDRAETALASALDSAGLPY 61

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P E   +   I  +                            K    R  + G    
Sbjct: 62  DLQPGEGAFYGPKIEFSL---------------------------KDCLGRVWQCGT--- 91

Query: 290 FGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               ++LP  +SA +   D  + + V +    +G+      ++   ++G    W   +AP
Sbjct: 92  LQLDFNLPIRLSAEYVSEDNSRKNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAP 148

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +  ++NI        D   ++   L++ G     D   E+IG +     LL  P  +++
Sbjct: 149 TQAVIMNITDK---QADFALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVI 205

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G + V    V ++ R       M + +   + +   S  
Sbjct: 206 GDREVEMQTVAVRTREGADLGSMPVAQFAEFLAQAVSRR 244


>gi|170595002|ref|XP_001902209.1| Met-10+ like-protein [Brugia malayi]
 gi|158590243|gb|EDP28945.1| Met-10+ like-protein [Brugia malayi]
          Length = 693

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 147/378 (38%), Gaps = 56/378 (14%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LP  ++ +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  EM  L+D+ ++
Sbjct: 341 LPCCRRIIDKLIKVIETELNAIGAYKISMPILGAKEMWQKAGRWSAFKSEMFHLSDKTNQ 400

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                PTHEE++T +      ++    F  Y +    R++++    V+ +++  +   Y 
Sbjct: 401 VYCLQPTHEEMVTKLVAEQTANHFYGNFDNYILHS--RNQIK---SVLVTKKHFVLYFYL 455

Query: 163 FDLTPEGSKHSYNKMF--------------VSYLRIFH-RLGLKSIPMRAESGPIGGDLS 207
            +            ++               +Y RIFH RL +    +RA++G IGGD+S
Sbjct: 456 LNNGTATIGELREAVYPLMLYQMGPKFRDETTYQRIFHDRLDINFYIVRADAGNIGGDMS 515

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE+ +   T    +              N D            +                
Sbjct: 516 HEYHLPCKTSRDSIAYCSKCNL----GMNHDLLKRGEKPCCCSKEYIS------------ 559

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                         IE+ H F  G  ++    A           + M  +GIG   ++A 
Sbjct: 560 ----------IVETIEIAHTFQLGDLFTKKFGAKHND-----QPLIMNCFGIGIGLLIAV 604

Query: 328 VIESSH-DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK---VGCDVFWDD 383
           +I S     K +    ++ PFK+++I          +  E I   LS+   V  D+F DD
Sbjct: 605 IINSMSPSTKALRLLYALIPFKVAVILPNKTQSETMEFAENIIGHLSQISSVQNDIFVDD 664

Query: 384 M-GEQIGSQFAVADLLGF 400
                IG +   A  LG 
Sbjct: 665 RLDNSIGRRLLTAANLGI 682


>gi|301106649|ref|XP_002902407.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262098281|gb|EEY56333.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 764

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 131/429 (30%), Gaps = 64/429 (14%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           + ++GMI  +   G Y   P   +  + V   +       G      P            
Sbjct: 279 ITKSGMIDYYDVSGCYILRPYSYEIWERVQQFLDRNLKAIGVKNCYFP------------ 326

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                   M    ++ +K       H E          KS  +              EL+
Sbjct: 327 --------MFVTKEKLEKEK----DHLEGFAPEVAWVTKSGNS--------------ELK 360

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK--MFVSYLRIFHRLGLKSIPMRAESGPI 202
               +  + E +M  A+           S+    M ++      R   K+      +   
Sbjct: 361 DPIAIRPTSETIMYPAFK------NWIRSHRDLPMKLNQWNNVVRWEFKNPTPFLRTREF 414

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                H      +  + +V    DF      +   +   +  +  +  +      A    
Sbjct: 415 LWQEGHTAHATKEEADEEVRAVLDFYA----ACYEELLAVPMIKGVKTEKEKFAGADYTT 470

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             E    +         RGI+       G  +      T +  DGK       S+G    
Sbjct: 471 TIEGFIPATG-------RGIQAATSHMLGQNFGKMFGITAEYEDGKKLIPWQNSWGFT-T 522

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD----QVCRDACEKIYARLSKVGCD 378
           R +  +I    D KG++ P  VAP ++ ++ I   +    +      ++I A+L+  G  
Sbjct: 523 RSLGVMIMVHGDDKGLVLPPRVAPTQVIVVPIPFKNQDEVEEIFAKADEIVAKLADAGVR 582

Query: 379 VFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  D       G ++   +L G PL+  VG K ++  +V +  R  G +ED+   E+   
Sbjct: 583 IEADKRCVYTPGWKYNHWELKGVPLRFEVGPKDIAKKQVRVVRRDNGAKEDIPEAELATR 642

Query: 438 ASHRFSNNR 446
                   +
Sbjct: 643 IPALLEQIQ 651


>gi|238591358|ref|XP_002392585.1| hypothetical protein MPER_07812 [Moniliophthora perniciosa FA553]
 gi|215458845|gb|EEB93515.1| hypothetical protein MPER_07812 [Moniliophthora perniciosa FA553]
          Length = 210

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 7/208 (3%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +E   +A    H+ + R       +  S G   WLP G +  +N+  ++R E  + G  E
Sbjct: 5   KEWLAEAAKRDHRKIGREQELFFFNDVSPGSCFWLPHGTRIYNNLVELLRSEYWKRGYQE 64

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +  LW  SG + +Y   M  L D   +     P +      IF S  +SY+ L
Sbjct: 65  VISPNMFNTKLWETSGHWQNYTDGMFVL-DVEKEKWALKPMNCPGHCIIFDSRDRSYKEL 123

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +  +  R+E      G+ R R F+  D + F + P   +    ++F     ++  
Sbjct: 124 PIRMAEFGIIHRNEASGALTGLTRVRRFVQDDTHVFCM-PSQIEEEIGRLFDFMQHVYGL 182

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            G +   +   + P       +   +A+
Sbjct: 183 FGFEF-HLELSTRPENFLGDIKTWEVAE 209


>gi|326481769|gb|EGE05779.1| prolyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 604

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 127/420 (30%), Gaps = 79/420 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 105 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 164

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 165 KEKDHIEGFAAEVAWVTHAGNSALEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 224

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +                                                    
Sbjct: 225 SVVRWEFKNPQPF----------------------------------------------- 237

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  +   T+V                 +++++++  I  Q T   
Sbjct: 238 LRTREFLWQEGHTAHLTREEAHTEVLQILQHYAHV-------YEELLAVPVIQGQKTDKE 290

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKDHY- 311
                ++   +   +P     + RGI+ G     G  +S     T +      D K    
Sbjct: 291 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPPL 346

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRD 363
            V   S+G+ + R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 347 HVWQNSWGL-STRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 405

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 406 EIEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 465


>gi|82947575|dbj|BAE52439.1| Prolyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 471

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 130/436 (29%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P     + L  E+   + + KEM  +
Sbjct: 9   GCMVIKPWGYGIWEAIQRDLDRRIKETGHENCYFPLFIPLSFLEKEAAHVEGFAKEMAVV 68

Query: 97  ADRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++ ++  PT E ++ D F   I+SYR+LP    Q     R E
Sbjct: 69  THHRLVAEDGKLVPSGKLEEPLVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWE 128

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPR        FL    + +                                       
Sbjct: 129 MRPRI-------FLRTAEFLWQ-------------------------------------- 143

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                H     A+    +                 +   +++   +            + 
Sbjct: 144 ---EGHTAHATAEEAMDETLKML------------EVYRVMAEEVLAMPVIVGEKPAHER 188

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     E      + ++ G   + G  +S   +  ++ A G + +    S+G+ + 
Sbjct: 189 FPGADKTYSIEAMMQDGKALQAGTSHFLGQHFSKAQNIRYQTAQGGEEFCYTTSWGV-ST 247

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKV---- 375
           R++  VI S  D  G+  P  +AP +I  + I   D    +  D    I   LS      
Sbjct: 248 RLIGGVIMSHADDNGLRVPPRIAPKQIVFVPITRADGDEALIEDFLAPIVKDLSAQSFGG 307

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEE 433
               V  D        +       G P+   VG + V+   V +  R   ++  +   +E
Sbjct: 308 ERLRVHVDRRPLAPPEKRWEWVKKGAPIICEVGPRDVAGGSVAMIRRDGELKGQITPKDE 367

Query: 434 VINYASHRFSNNRPVL 449
           +++ A+    + +  L
Sbjct: 368 LVSRAAAILEDIQKTL 383


>gi|162319780|ref|YP_422998.2| prolyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|114152208|sp|Q2W136|SYP_MAGMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 500

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 130/436 (29%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P     + L  E+   + + KEM  +
Sbjct: 38  GCMVIKPWGYGIWEAIQRDLDRRIKETGHENCYFPLFIPLSFLEKEAAHVEGFAKEMAVV 97

Query: 97  ADRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++ ++  PT E ++ D F   I+SYR+LP    Q     R E
Sbjct: 98  THHRLVAEDGKLVPSGKLEEPLVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWE 157

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPR        FL    + +                                       
Sbjct: 158 MRPRI-------FLRTAEFLWQ-------------------------------------- 172

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                H     A+    +                 +   +++   +            + 
Sbjct: 173 ---EGHTAHATAEEAMDETLKML------------EVYRVMAEEVLAMPVIVGEKPAHER 217

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     E      + ++ G   + G  +S   +  ++ A G + +    S+G+ + 
Sbjct: 218 FPGADKTYSIEAMMQDGKALQAGTSHFLGQHFSKAQNIRYQTAQGGEEFCYTTSWGV-ST 276

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKV---- 375
           R++  VI S  D  G+  P  +AP +I  + I   D    +  D    I   LS      
Sbjct: 277 RLIGGVIMSHADDNGLRVPPRIAPKQIVFVPITRADGDEALIEDFLAPIVKDLSAQSFGG 336

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEE 433
               V  D        +       G P+   VG + V+   V +  R   ++  +   +E
Sbjct: 337 ERLRVHVDRRPLAPPEKRWEWVKKGAPIICEVGPRDVAGGSVAMIRRDGELKGQITPKDE 396

Query: 434 VINYASHRFSNNRPVL 449
           +++ A+    + +  L
Sbjct: 397 LVSRAAAILEDIQKTL 412


>gi|330723868|gb|AEC46238.1| prolyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 480

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 139/418 (33%), Gaps = 71/418 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P      + +   + +   R     +  P L        E    + +  E+L 
Sbjct: 34  KGTIYFKPNSFALWEKIQENLNKYFKRENVKNVYFPLLIPQSFITKEKSHVEGFAPELLT 93

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +    + +   PT E +  D F+  + +   LP  + Q     R E         
Sbjct: 94  ITHAGEKKLSEELYVRPTSEVLFADCFKKELANNNQLPLIYNQWTSVLRWEKNTN----- 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
              FL    + +                                             E  
Sbjct: 149 --PFLRTTEFLWQ--------------------------------------------EGH 162

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +    E     +K  +         DF +      ++          +        +++
Sbjct: 163 TVHSNAEEAKRLAKKMI-----GIYKDFIENYLAIPVIIGNKTERERFAGAEQTYTVEAM 217

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            ++     + ++ G   Y    +S      FK    +       S+G+ + R++  +I +
Sbjct: 218 MKDG----KALQSGTSHYLAQNFSKSFDIVFKNDKNEFENPYQTSWGV-STRLIGGLIMT 272

Query: 332 SHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +G+I P  +AP ++ ++ + A  + +     ++I+ +L K+   +  D    Q G 
Sbjct: 273 HGDDRGVILPPKIAPIQVDILELFAIKNPIVSIVAKQIFEKL-KIKFTLRIDSTDNQPGY 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSNN 445
           + + +++LG PL++ VG + +  ++V I  R T  +  + +E+V   + +      NN
Sbjct: 332 KASRSEVLGTPLRIEVGPRDLEKNQVAIVRRDTLEKHQVEVEKVFEKVEFLLEEIQNN 389


>gi|94496356|ref|ZP_01302933.1| prolyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94424102|gb|EAT09126.1| prolyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 508

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 147/455 (32%), Gaps = 94/455 (20%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
              M  +   +G     P G    + +  ++ E+   TG      P       +  E+  
Sbjct: 23  EADMAEESGVRGCMVIRPWGYGIWERMQKLLDEQIKATGHENCYFPLFIPLSYFEKEAEH 82

Query: 86  YDSYGKEMLRLADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            D + KEM  +                    ++ ++  PT E V+   F   ++S+R+LP
Sbjct: 83  VDGFAKEMAVVTHHRLIQQDGKLVPDPEAKLEEPLVVRPTSETVIGAAFSRWVQSWRDLP 142

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               Q     R E       MR+R         F  T E                     
Sbjct: 143 VLINQWANVVRWE-------MRTR--------MFLRTAE--------------------- 166

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                                  L   G T      + MD  +     +     +   + 
Sbjct: 167 ----------------------FLWQEGHTAHATVGEAMDETLK--MLEVYRAFAEECVA 202

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A     ++     +     E      + ++ G   + GT +S   +  F+ A+G+ 
Sbjct: 203 MPVIAGEKPENERFPGAVATYSIEAMMQDGKALQAGTSHFLGTTFSQAQNIKFQNAEGQQ 262

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACE 366
              Q  S+G+ + R++  +I +  D  G+  P  VAP++I ++ +      D    + C 
Sbjct: 263 ELAQTTSWGV-STRMIGGLIMTHGDDDGLRVPPRVAPYQIVIVPMLRDTEEDAAIVEYCT 321

Query: 367 KIYARLSKVG-----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  RL+++           D    +  ++       G P+ + VGS+ V+   V +  R
Sbjct: 322 NLVHRLNQLDAFREPVRALLDKRPAKAATKRWGWVKKGAPIVIEVGSRDVAGGNVSVIRR 381

Query: 422 LTGIRED-------MSLEEVINYASHRFSNNRPVL 449
               RED       ++ ++++  A+      +  L
Sbjct: 382 DRLYREDGKLDSRIVAKDDLVGSAASMLEEVQAAL 416


>gi|169806754|ref|XP_001828121.1| prolyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|161779249|gb|EDQ31273.1| prolyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 501

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 136/435 (31%), Gaps = 71/435 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWV 81
           +++L+  ++  +  KG +   P        +      E  +    E   P  +   ++  
Sbjct: 23  QIVLKGELVDYYDIKGCFIIRPNAMGIWKQIQNWFNSELEKRNIEECYFPLLITKKNMEK 82

Query: 82  ESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    +++  E+  +      + D  +   PT E +M   F   + ++R+LP    Q   
Sbjct: 83  EKNHLNNFNPELAWITHCGNKKLDDPVGIRPTSEAIMYPSFAKWLNTHRDLPLKLNQWCS 142

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E++     +R REFL ++ ++       +++    +   Y  ++    L ++P+  
Sbjct: 143 VLRWEVKSTLPFIRGREFLWQEGHTVYHKQIDAQNEVKDILNLYSYVYEE--LLAVPVYK 200

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                G    +E    A+   +      +       + +    D  S    ++     Y 
Sbjct: 201 -----GLKSKNETFGGAEYTLSLEAFIPETGRGIQAATSHHLGDNFSKIFDIKVNDDKYP 255

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +              +  ++ R I +                             + S 
Sbjct: 256 GSKSF-------VYQNSWGLTTRAIGIA--------------------------AMIHS- 281

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYA 370
                           D KG +    VA  ++ +I                +     I  
Sbjct: 282 ----------------DNKGFVCSPRVAHIQVVIILCGIKKTHTPNEIDSLKKYANNIQY 325

Query: 371 RLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L K    V  DD   + +G +F   +L G PL+  +G   ++  +V    R TG ++  
Sbjct: 326 ELKKHNIRVLIDDKDNQSVGFKFNNWELKGVPLRFEIGFNDMNKEEVCCVRRDTGEKKSF 385

Query: 430 SLEEVINYASHRFSN 444
               +I       ++
Sbjct: 386 HTSRIIELTQLEMND 400


>gi|260681819|ref|YP_003213104.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685416|ref|YP_003216549.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
 gi|260207982|emb|CBA60134.1| putative dual-specificity prolyl/cysteinyl-tRNA synthetase
           [Clostridium difficile CD196]
 gi|260211432|emb|CBE01531.1| putative dual-specificity prolyl/cysteinyl-tRNA synthetase
           [Clostridium difficile R20291]
          Length = 510

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D
Sbjct: 251 MMHDGKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWG-ASTRLIGGLIMTHSD 309

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
            +G++ P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F 
Sbjct: 310 NRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKTKGVAVEVDDRDNYTTGWKFN 369

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             ++ G P++V +G K + +++  +  R T  ++ M LE + +     F
Sbjct: 370 EWEMKGAPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLF 418


>gi|83770284|dbj|BAE60417.1| unnamed protein product [Aspergillus oryzae]
          Length = 620

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/464 (15%), Positives = 141/464 (30%), Gaps = 93/464 (20%)

Query: 23  HKLMLRTGMIHQHS-KGIYSW--------LPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
            +++ +  M+  +   G +           P      + +         + G    S P 
Sbjct: 104 QQVLTKGDMLDYYDVSGCFILKSFRADMTQPASYFIWEEIQDWFNARIKKIGVKNCSFPL 163

Query: 74  LQSAD-LWVESGRYDSYGKEMLRLADRND-------------KAMIYGPTHEEVMTDIFR 119
             S D L  E    + +  E+  +    D             K +   PT E VM   + 
Sbjct: 164 FVSEDVLNREKDHIEGFAAEVAWVTHAYDSSRPSYIGSSPLEKKIAIRPTSETVMYPYYS 223

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT +G+      +  
Sbjct: 224 KWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHLTKDGAHDEVMHILD 283

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS---KDFMDFPIPSEN 236
            Y +I+    L ++P+                V     E + F        ++  IP+  
Sbjct: 284 LYAQIYEE--LLAVPV----------------VKGQKTEKEKFAGGLYTTTVEGYIPATG 325

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                  S                D   +      P             H++        
Sbjct: 326 RGIQGGTSHGLGQNFSKMFNITVEDPSTKPDEKKPPL------------HVWQ------- 366

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                              S+G+ + R +  ++    D +G++ P  VA  +  ++ +  
Sbjct: 367 ------------------NSWGL-STRTLGVMVMIHSDNRGLVLPPRVADTQTVIVPVGI 407

Query: 357 HDQVCRDACEKIYAR-------LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGS 408
             +   +  EK+YA        L+  G     D   G   G +F   +L G PL++  G 
Sbjct: 408 TAKTSDEEREKLYAEIDGLINILTGAGVRAISDKREGYSPGWKFNDWELRGVPLRIEFGP 467

Query: 409 KFVSDSKVEIKHRL---TGIREDMSLEEVINYASHRFSNNRPVL 449
                  V    R       +  + + E+           +  L
Sbjct: 468 GESVGQFVTAARRDIPGKDGKSSIQISELSTAVPALLEQIQKDL 511


>gi|327311077|ref|YP_004337974.1| prolyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326947556|gb|AEA12662.1| prolyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 491

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 4/208 (1%)

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            + +   +        D     ++    +      R +++G + Y GT +S     T+  
Sbjct: 196 FDKMCIPYLISQRPEWDKFAGAVYTIAFDTILPDGRTLQIGTVHYLGTNFSKVFEVTYLR 255

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCR 362
            DG   YV   SYGI + R +AA++    D  G   P ++AP +  ++ I   ++     
Sbjct: 256 PDGSHEYVHTTSYGI-SERSIAAMLIIHGDDAGTTIPPALAPIQAVVVPIIYGEERKAVM 314

Query: 363 DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +A   +  RL   G  V  DD   +  G +F   +L G PL++ +G + V    V +  R
Sbjct: 315 EAASSVAERLRASGVRVHIDDREDKTPGWKFYYWELKGVPLRIEIGKRDVEQRSVVLARR 374

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
            T  +  + L+E+ +            L
Sbjct: 375 DTLEKYSVGLDELEDAVKKLLGEIEENL 402



 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 6/178 (3%)

Query: 23  HKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           H L+    +  I    KG + W P G K   NV A+IRE  + TG  E+  P     + +
Sbjct: 28  HWLLREAEIYDIRYPVKGAFVWRPYGMKIRRNVEAVIRELHDSTGHQEVLFPVFIPYEFF 87

Query: 81  -VESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             ES     +  E+  ++      + +I  PT E  M  +F+  I+ +R+LP   YQI  
Sbjct: 88  SKESQHIRGFESEVFWVSKGGEAGERLILRPTSETAMMPMFKLWIQDHRDLPLAVYQIVS 147

Query: 138 KFRDELRPRFGVMRSREFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
            FR E +    ++R RE  M K+A++     E ++         Y +IF ++ +  + 
Sbjct: 148 VFRAETKMTNPMIRVREISMFKEAHTAHADREDAERQVRLAVDIYKKIFDKMCIPYLI 205


>gi|288918333|ref|ZP_06412686.1| prolyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288350228|gb|EFC84452.1| prolyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 471

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 3/181 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + +++      G  ++      F GADG  H     S+G  + R++  +I
Sbjct: 213 MTCEGMMGDGKALQMATSHELGQNFARAFDIDFLGADGGRHLAWTTSWG-SSTRMIGGLI 271

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
            +  D  G+  P ++AP ++ ++ ++  D+       +I   L+  G  V  D   G   
Sbjct: 272 MAHGDDNGLRIPPALAPTQVIVLPVR-DDEAVVAKAREITDALTAAGVRVSLDARPGLSF 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +   A+L G P++V +G + ++   V +  R TG +  + L +V         + +  
Sbjct: 331 GRRVTDAELKGIPVRVEIGPRDLAAGNVTVARRDTGEKHPVPLTDVAARVPALLDDVQAT 390

Query: 449 L 449
           +
Sbjct: 391 I 391


>gi|213580910|ref|ZP_03362736.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 234

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 5/178 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 61  YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 118

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M   +  N +     P +      IF   +KSY
Sbjct: 119 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSY 177

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +   N       
Sbjct: 178 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTEEQIRDEVNACIRMVY 234


>gi|14590847|ref|NP_142919.1| prolyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74579173|sp|O58734|SYP_PYRHO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3257420|dbj|BAA30103.1| 480aa long hypothetical prolyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 480

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R +++G +  +   +S   +  ++  DG   YV   ++G+ + R++AAVI    D 
Sbjct: 217 MPDGRTLQIGTMHNYKQNFSKAYNILYEKEDGTHDYVHQTTFGM-SERLLAAVIAIHGDD 275

Query: 336 KGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +G++ P ++AP ++ ++ I     ++      + I   L   G  V+ D   ++ G +F 
Sbjct: 276 RGMVLPPTIAPIQVVIVPIPKKGSEEEVYSYAKGIEEELRDAGIRVYLDLRDKRPGWKFY 335

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +L G P++V VG   V +S V +  R    +  +  EE+++     F +
Sbjct: 336 DWELKGVPVRVEVGPIDVQNSTVVLARRDKLEKITVKREELVDKVRELFED 386



 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 82/218 (37%), Gaps = 18/218 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F     E   +A I                KG+  WLP G K + N+   I EE 
Sbjct: 6   RWSEEFSEWFNEVIEEAGILDK---------RYPVKGMNVWLPYGLKIMRNIEKFIHEEM 56

Query: 62  NRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
            RTG  E+  P L    +   E+     +  E+  +     + +    +  PT E  M  
Sbjct: 57  ERTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFWVTHAGHEPLDVRLVLRPTSETAMYS 116

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM-KDAYSFDLTPEGSKHSYN 175
           +F   I+S+ +LPF  YQI   +R E +    ++R RE     +A++     E ++    
Sbjct: 117 MFALWIRSHADLPFKVYQIVNVYRYETKHTRPLIRVREISRFFEAHTAHADFEDAERQIK 176

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +    +  +  +L L  I       P        F  L
Sbjct: 177 EDLEIFDNLMRKLALAYII---SKRPEWDKFPGAFYSL 211


>gi|325990107|ref|YP_004249806.1| threonyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323575192|emb|CBZ40857.1| Threonyl-tRNA synthetase [Mycoplasma suis]
          Length = 425

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/435 (14%), Positives = 143/435 (32%), Gaps = 33/435 (7%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQ 75
           D         L      +   G   W   G K  + +   I + Q    G   +  P L 
Sbjct: 17  DHRAVGKNKGLFY-FSKEIGSGFSFWASEGYKLREIIKRYINDFQRDICGINLVQTPILG 75

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +++ ++G    Y + +     +  +  I  P        + +  I SY+ LP+   + 
Sbjct: 76  KTEIYQKTGHLPLYDENIFPAMKKEGEEWILRPMTCPHHILLAKEVIMSYKQLPYLMGEN 135

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R E      G+ R R   + D + F L PE  +            + ++  ++   
Sbjct: 136 SCLHRYEYSGGLLGLKRVRAMELIDTHIFVL-PEHCEDMIKSSLEWVWTLLNKFRIRIKE 194

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   +         ++++  D          +  +  + S   ++    +++  + +   
Sbjct: 195 IVLATR----SSKQKYLISGDEW--------NQTEEILFSATKEWIKSKNISVSLVRKEG 242

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A      +    DS  +   +S   ++                 +   A+       +
Sbjct: 243 EAAFYGPKIDFNAVDSSNQEFTISTVQLDSQMPKKL--------EFSILDANQNSINPWI 294

Query: 315 GSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              G+     R +A ++E      G   P  + P +IS++ ++      R   +++  + 
Sbjct: 295 IHLGLIGTLERFIAYLLE----DWGGKLPFWLLPTQISILTVRIDSS--RPELKELIKKF 348

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSL 431
           S  G     D   E+I  +   A     P Q+I+G K + +   +  +       + +S 
Sbjct: 349 SSYGFRAKLDLRDERISKKIVNAVNERIPFQIIIGEKELQNLDLINFRELGKEGEKQLSF 408

Query: 432 EEVINYASHRFSNNR 446
            + INY S    +N+
Sbjct: 409 SDFINYLSQEEISNQ 423


>gi|302667978|ref|XP_003025567.1| hypothetical protein TRV_00207 [Trichophyton verrucosum HKI 0517]
 gi|291189682|gb|EFE44956.1| hypothetical protein TRV_00207 [Trichophyton verrucosum HKI 0517]
          Length = 613

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 127/420 (30%), Gaps = 79/420 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 104 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGNSPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +                                                    
Sbjct: 224 SVVRWEFKNPQPF----------------------------------------------- 236

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  +   T+V                 +++++++  I  Q T   
Sbjct: 237 LRTREFLWQEGHTAHLTREEAHTEVLQILQHYAHV-------YEELLAVPVIQGQKTDKE 289

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKDHY- 311
                ++   +   +P     + RGI+ G     G  +S     T +      D K    
Sbjct: 290 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPPL 345

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRD 363
            V   S+G+ + R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 346 HVWQNSWGL-STRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 404

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 405 EIEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 464


>gi|134046250|ref|YP_001097735.1| threonyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|166223355|sp|A4FZ87|SYT_METM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|132663875|gb|ABO35521.1| threonyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 622

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 150/447 (33%), Gaps = 56/447 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           ++ EI  ++     G           W P G+   D ++  +       G + +  P + 
Sbjct: 205 KEKEICDYEPSSDAGHFR--------WYPKGKLIRDLLSDYVYNLVVENGGMPVETPVMY 256

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      D +G+   R    N K ++           + +      +++P   Y++
Sbjct: 257 DLQNNAIREHADKFGERQYRFKQGN-KDLMLRFAACFGQFMMKKDMYLLPKHMPLKLYEL 315

Query: 136 QL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E R    G+ R R F M D ++  +  + +  ++             +GLK+ 
Sbjct: 316 STYSFRYEQRGELVGLKRLRAFTMPDMHTVCIDMKQAMEAFEDQLW--------MGLKT- 366

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                    G D    + ++    E   F  ++   F       ++      ++I+E   
Sbjct: 367 ---------GDDFKTPYAIIFRFTED--FFEENKEWFF--GMAKEYKQKYGKDAILEILP 413

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                     +  + DS           I+V     FG              D K   + 
Sbjct: 414 GRKHYWVGKVDMAVVDSFGRPIENPTVQIDVESAERFG--------IVVHDGDKKVQPII 465

Query: 314 MGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +     G++ RV+  ++E+++    + K    P  + P +  +I +        +   ++
Sbjct: 466 LHCSPTGSVERVLCGLLENAYLNTLENKPPALPTWLTPIQARVIPVGDK---HAEFALEV 522

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--- 425
             +L   G    +DD  + +G +   A        V++G   +  SK+ +  R       
Sbjct: 523 ATKLRASGIRADFDDREDSMGKKVRNAGTDWVNYVVVIGDSEMESSKLTVTVREESELKK 582

Query: 426 --REDMSLEEVINYASHRFSN--NRPV 448
             +E +++EE+I   +    +   RP+
Sbjct: 583 AKKESLTVEELIEKITSDVKDAPKRPL 609


>gi|159904883|ref|YP_001548545.1| threonyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|238686928|sp|A9A6L7|SYT_METM6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|159886376|gb|ABX01313.1| threonyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 622

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/447 (15%), Positives = 149/447 (33%), Gaps = 56/447 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           ++ EI  ++     G           W P G+   D ++  +       G + +  P + 
Sbjct: 205 KEKEICDYEPSSDAGHFR--------WYPKGKLIRDLLSDYVYNLVVERGGMPVETPVMY 256

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      D +G+   R    N K ++           + +      +++P   Y++
Sbjct: 257 DLQNNAIREHADKFGERQYRFKQGN-KDLMLRFAACFGQFMMKKDMYLLPKHMPLKLYEL 315

Query: 136 QL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E R    G+ R R F M D ++  +  + +  ++             +GLK+ 
Sbjct: 316 STYSFRYEQRGELVGLKRLRAFTMPDMHTVCIDMKQAMEAFEDQLW--------MGLKT- 366

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                    G D    + ++    E   F  ++   F       ++      ++I+E   
Sbjct: 367 ---------GDDFKTPYAIIFRFTED--FFEENKEWFF--GMAKEYKQKYGKDAILEILP 413

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                     +  + DS           I+V     FG              D K H + 
Sbjct: 414 GRKHYWVGKVDMAVVDSFGRPIENPTVQIDVESAERFG--------IVVHDGDKKVHPII 465

Query: 314 MGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +     G++ RV+  ++E+++    + +    P  + P +  +I +             +
Sbjct: 466 LHCSPTGSVERVLCGLLENAYLNTLENRPPALPTWLTPVQARVIPVGDKHSAF---ALDV 522

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--- 425
             +L   G    +DD  + +G +   A        V++G   +   K+ +  R       
Sbjct: 523 ATKLRASGIRADFDDREDSMGKKVRNAGTDWVNYVVVIGDSEMESGKLTVTVREESELKK 582

Query: 426 --REDMSLEEVINYASHRFSN--NRPV 448
             +E++++EE+I   +    +   RP+
Sbjct: 583 AKKEELTVEELIEKITSDVKDAPKRPL 609


>gi|332967807|gb|EGK06908.1| threonine--tRNA ligase [Desmospora sp. 8437]
          Length = 295

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 117/319 (36%), Gaps = 30/319 (9%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
               +L + T +  +  +G+  WLP G      +   I +++ R G   +  P L S +L
Sbjct: 1   KLGKELKIFT-LSQEVGQGLPLWLPNGATIRRIIERYIIDKEERLGYQHVYTPHLASVEL 59

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           +  SG +D Y ++M      +++ ++  P +      I+++ +KSYRNLP    ++ +  
Sbjct: 60  YKISGHWDHYHEDMYPPMKMDNEELVLRPMNCPHHMMIYKNDLKSYRNLPVRIAELGMMH 119

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E+     G+ R R   + DA+ F   P+  K  + ++      ++   G+K    R  
Sbjct: 120 RHEMSGALSGLQRVRAMTLNDAHIF-CRPDQIKSEFIRVVQLIEEVYRDFGIKDFWYRLS 178

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                           D  + + +   D M         +  D + ++ +        A 
Sbjct: 179 YR--------------DPEDKKKYVQNDEMWETSQRMLREAMDEMGVDYV-------EAE 217

Query: 259 TSDVHNEKLFDSLPENKRVSARGI-EVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGS 316
                     D   +        +  V   F+   ++       + G DG+ H  V +  
Sbjct: 218 GEAAFYGPKLDVQVQTALGKDETLSTVQMDFHLPNQF----GLEYIGEDGQPHRPVVIHR 273

Query: 317 YGIGAMRVVAAVIESSHDG 335
             +G M    A +   + G
Sbjct: 274 GIVGTMERFVAFLLEYYKG 292


>gi|297527450|ref|YP_003669474.1| threonyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256366|gb|ADI32575.1| threonyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 614

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 125/353 (35%), Gaps = 44/353 (12%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSREFLMK 158
           +++  +           + R  I SY+NLPF  +++   +R E R    +  R R+F M 
Sbjct: 278 DNEKFVLRYAACHQQFAMLRDWIISYKNLPFGMFEVADSYRLEQRGELNLCFRLRKFYMP 337

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D +  +   + +            RI     L+ I        IG      + V +D  E
Sbjct: 338 DLHILNKDLDEAIK--------MSRIVQDKILEEIA------KIGRKYVALYNVTSDFFE 383

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                              +F    +   +V    +            + D+L   + ++
Sbjct: 384 KHR------------DVLIEFVRRENYPVLVSVIPSGIYYWVLNVEYHIIDNLNRPREIA 431

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIE----SS 332
              I++G+            + T+    G+ H+  +    I     R +  + +      
Sbjct: 432 TFQIDIGN--------GKRFNITYTDEKGEKHHPVIIHTAIIGGIERFIYTIFDTAALME 483

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +GK    P  +AP ++ +I IK       D  EK+  ++   G  V  DD GE +G + 
Sbjct: 484 REGKTPYIPTWLAPVQVRIIPIKNK---YLDYAEKVAEKIENAGFRVDIDDRGESLGKKI 540

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             A     P  V++G + V  + + ++ R T  ++ M  +E+I        N 
Sbjct: 541 RDAGREWIPYIVVIGEREVKSNTINVRIRRTNDQKVMVTDELIRILEEETKNY 593


>gi|325973664|ref|YP_004250728.1| threonyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|323652266|gb|ADX98348.1| threonyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 424

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 138/434 (31%), Gaps = 36/434 (8%)

Query: 22  SHKLMLR-TGMI---HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQS 76
            H+ + +  G      +   G   W   G K  + +   I + Q    G   +  P L  
Sbjct: 16  DHRTVGKNKGFFYFSKEIGSGFSFWASEGYKLREIIKRYINDFQRDICGINLVQTPILGK 75

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +++ ++G    Y + +     +  +  I  P        + +  I SY+ LP+   +  
Sbjct: 76  TEIYQKTGHLPLYDENIFPAMKKEGEEWILRPMTCPHHILLAKEVIMSYKQLPYLMGENS 135

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+ R R   + D + F L PE  K            + ++  ++   +
Sbjct: 136 CLHRYEYSGGLLGLKRVRAMELIDTHIFVL-PEHCKDMIKSSLEWVWTLLNKFRIRIKEI 194

Query: 196 RAESGPIGGDLSHEFIVLADTGE--TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
              +         ++++  D      ++  S         + +                 
Sbjct: 195 VLATR----SSKQKYLISGDEWNQTEEILFSATKEWIASKNISVSLVRKEGEA------- 243

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
              A      +    DS  +   +S   ++               S  +   +  + ++ 
Sbjct: 244 ---AFYGPKIDFNAVDSSNQEFTISTVQLDSQMPKKL------EFSILYANQNSINPWII 294

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                    R +A ++E      G   P  + P +IS++ ++           ++  + S
Sbjct: 295 HLGLIGTLERFIAYLLE----DWGGKLPFWLLPTQISILTVRIDSSRHE--LNELIKKFS 348

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLE 432
             G     D   E+I  +   A     P Q+I+G K + +   +  +       + +S  
Sbjct: 349 SYGFRAKLDLRDERISKKIVNAVNERIPFQIIIGEKELQNLDLINFRELGKEGEKQLSFS 408

Query: 433 EVINYASHRFSNNR 446
           + INY S    +N+
Sbjct: 409 DFINYLSQEEVSNQ 422


>gi|169347325|ref|ZP_02866263.1| hypothetical protein CLOSPI_00040 [Clostridium spiroforme DSM 1552]
 gi|169293942|gb|EDS76075.1| hypothetical protein CLOSPI_00040 [Clostridium spiroforme DSM 1552]
          Length = 479

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 2/168 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   YFG  ++      F   + K  YV   S+G+ + R++ A+I    D 
Sbjct: 221 MHDGKALQSGTTHYFGQGFAKAFDMKFLSKENKLEYVYQTSWGV-STRLLGAIIMVHGDN 279

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  VAP ++ +I I+   +   D   ++  RL  VG  V  D   +  G +F+ A
Sbjct: 280 NGLVLPPRVAPIQVMIIPIQQQKEGVLDKAYELEQRLKAVGIRVKVDASDKTPGWKFSDA 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRF 442
           ++ G PL++ +G K +++    +  R  G++   SL+  + +      
Sbjct: 340 EMRGIPLRLEIGPKDIANDVCVLAKRNDGMKAVYSLDGSLEDTIKQLL 387



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P      + +   + +    TG   + +P L    L   ES   + +  E   
Sbjct: 37  KGFIIYRPYSYAMWEAIQQYMDKRFKETGHENVYMPMLIPQSLLQKESDHVEGFAPECAI 96

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  ++ +I  PT E +  + +   + SYR+LP  + Q     R E +     +R
Sbjct: 97  VTKGGMDNLEENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVRWE-KTTRPFLR 155

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             EFL ++ ++   T E + H   +M   Y      L
Sbjct: 156 GSEFLWQEGHTIHATKEEAYHETLQMLKIYEETARDL 192


>gi|67471890|ref|XP_651857.1| prolyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56468636|gb|EAL46467.1| prolyl-tRNA synthetase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 536

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 140/429 (32%), Gaps = 65/429 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           ++++++G+I  +   G Y   P      +N+   +     + G      P   S A L  
Sbjct: 53  QIVVQSGLIEYYDISGCYILKPSAYGIWENIQHFMDARIKKMGVENAYFPCFVSQATLKK 112

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E ++   F++ I  +R+LP    Q   
Sbjct: 113 EEDELNGFTPEVAWVTKSGQSDLQEPIALRPTSETIIYPAFKNWISGHRDLPIKVNQWCN 172

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E    +  +R+REFL ++ ++   T   ++   +++   Y  ++    L ++P+  
Sbjct: 173 VVRWEFSHPYPFIRTREFLWQEGHTAFATQAEAEKECHEILELYASVYED--LLAVPV-- 228

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S         GET             P        +  +     +      
Sbjct: 229 ----IRGKKS--------KGET------------FPGAYYSLT-VECIIPTNGRSVQAGT 263

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +            +      + + +   + +   T+       T     G     +    
Sbjct: 264 SHHLGQTFSKLFQIEFEDEDNKKQLVWQNSWGLSTRSIGVTIMTHGDNKGIIVPPRAAQK 323

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +        +I   H G                     +D++     E++   L   G 
Sbjct: 324 QVV-------IITLHHKG-------------------SPNDEM-DAKAEELTQVLIDNGI 356

Query: 378 DVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             F D   E  + G +F+  ++ G P+++ +G +     KV I  R  G + + S E++I
Sbjct: 357 RAFAD-TNEMHKPGWKFSEYEMRGIPIRIELGPRDYEGKKVVIVRRDNGAKSESSWEDLI 415

Query: 436 NYASHRFSN 444
                    
Sbjct: 416 TNIKKTIDE 424


>gi|188585074|ref|YP_001916619.1| prolyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|259511608|sp|B2A5T8|SYP_NATTJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|179349761|gb|ACB84031.1| prolyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 483

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 5/174 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++ G     G  ++     TF   D +  YV   S+G+ + R++ A+I    D 
Sbjct: 223 MSDGRALQAGTSHNLGQHFAKVFDITFLDQDDERKYVWQTSWGV-STRLIGALIMVHGDN 281

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           +G+  P  VAP ++ ++ I      +   +  +K+Y  L      V  D+  E   G +F
Sbjct: 282 RGLKIPPKVAPHQLVMVPITPKKQREQVLEESDKLYQELKDK-FRVKLDNREEHTPGWKF 340

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              ++ G P+++ +G K +   +V +  R T  +  +  +E+I+       + +
Sbjct: 341 NEWEMKGVPIRLEIGPKDIEKDQVVLVRRDTDEKMFVKRDELIDKLEELIEDIQ 394



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 20/186 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L ++++      +  +  +          KG     P G    + +   +      
Sbjct: 20  SQWYLDVIKKTK----LVDYAPV----------KGCMVIRPYGYAIWEKMKEGLDRRIKE 65

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIF 118
           TG      P      L   E+   + +  E+  +    D+ +       PT E +  +++
Sbjct: 66  TGHENAYFPLFIPESLLQKEADHVEGFAPEVAWITKGGDEELSESLAVRPTSEAMFGEMY 125

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              I+S+R+LP    Q     R E       +R+ EFL ++ ++   T E ++    +M 
Sbjct: 126 SDWIQSWRDLPVLINQWANVVRWEKS-TKPFLRTSEFLWQEGHTAHRTEEDAEEEALQML 184

Query: 179 VSYLRI 184
             Y   
Sbjct: 185 DVYKDF 190


>gi|257051518|ref|YP_003129351.1| threonyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256690281|gb|ACV10618.1| threonyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 620

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 128/399 (32%), Gaps = 38/399 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   W P G+   D +   + +     G + +  P +              +G+   R  
Sbjct: 227 GNLRWYPRGKLVRDALMEYVNDLVVDYGGMPVETPIMYDLGARSIDEHAGKFGERQYRFE 286

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPRF-GVMRSREF 155
              D+ M+           I R    S  +LP   Y++    FR E R    G+ R R F
Sbjct: 287 S-GDRRMMLRFAACFGQFSIMRDMHISVNDLPLRVYEMSTYSFRREQRGEVTGLKRLRAF 345

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            M D ++   + E ++    K     L+    L L   P    +         EF    +
Sbjct: 346 TMPDMHTATESMEQAREELRKQAELALQTSEDLDLNYEPAIRMTR--------EFYEDNE 397

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                             +   D    +   S++E     +   S   +    D L    
Sbjct: 398 ------------------AWVEDVVAELGKPSLIEIIPERHHYWSAKIDFAAIDGLGRPI 439

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                 I+V     F  +Y+        G D     +   S   G  RV+AA++E +   
Sbjct: 440 ENPTVQIDVESAERFDIEYTD-------GTDSHHPPILHYSPSGGIERVLAALLEDTASM 492

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                P  ++P ++  I +        D CE +   L         DD  E +G + A A
Sbjct: 493 DTPQLPTWLSPTQVRFIPVNPDS--HLDYCEGLVDELEDADVRADIDDRDESVGKRIAKA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +    P  V+VG + +    + +  R      D++  E+
Sbjct: 551 ETDWVPYYVVVGDREIEGETIGVNVRADDDEIDLTPAEL 589


>gi|261333461|emb|CBH16456.1| bifunctional aminoacyl-tRNA synthetase, putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 808

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 127/434 (29%), Gaps = 64/434 (14%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  MI  +   G Y   P       +V           G  +   P   S   L  
Sbjct: 315 EVITKAEMIEYYDVSGCYIMRPWSFFIWKSVQKFFGSRIEAMGVEDCYFPMFVSKTCLER 374

Query: 82  ESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    +      +   PT E VM   +   I+S+R+LP        
Sbjct: 375 EKDHIEGFAPEVAWVTKAGESDLEVPVAIRPTSETVMYPYYAKWIRSHRDLPVRLNAWNS 434

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E       +R+REFL ++ +    T E       ++   Y  ++  L L    ++ 
Sbjct: 435 VVRWEFSHPMPFIRTREFLWQEGHCAWQTEEECSREVLEILDHYAAVYTDL-LAVPVVK- 492

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                G     E            + +                   +L     +      
Sbjct: 493 -----GKKTEKEKFAGG------YYTTTVETYIAAVGRGCQGGTSHNLGQNFGKMFNICF 541

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              D +++        +  +S R I V  I   G                          
Sbjct: 542 QDPDKNDDSTLIPWQNSWGLSTRVIGV-TIMVHGDD-----------------------R 577

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSKV 375
           GI     VA +               V    + +      +Q  V  D C+ +   L   
Sbjct: 578 GIVLPPRVACL--------------QVVIIPVGITKDTRQEQRNVLLDGCKALEGELRTA 623

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-- 432
           G  V  D       G +F   +L G P++V +G K +   ++ +  R  G R  +  +  
Sbjct: 624 GIRVKADLRNNYSPGWRFNHWELKGVPVRVELGPKEMETKQLSLVLRCDGQRRSVPWDGR 683

Query: 433 --EVINYASHRFSN 444
             E ++   +   N
Sbjct: 684 IAETMSDLLNEIHN 697


>gi|304373259|ref|YP_003856468.1| Prolyl-tRNA synthetase 2 [Mycoplasma hyorhinis HUB-1]
 gi|304309450|gb|ADM21930.1| Prolyl-tRNA synthetase 2 [Mycoplasma hyorhinis HUB-1]
          Length = 480

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 139/418 (33%), Gaps = 71/418 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P      + +   + +   R     +  P L        E    + +  E+L 
Sbjct: 34  KGTIYFKPNSFALWEKIQENLNKYFKRENVKNVYFPLLIPQSFITKEKSHVEGFAPELLT 93

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +    + +   PT E +  D F+  + +   LP  + Q     R E         
Sbjct: 94  ITHAGEKKLSEELYVRPTSEVLFADCFKKELANNNQLPLIYNQWTSVLRWEKNTN----- 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
              FL    + +                                             E  
Sbjct: 149 --PFLRTTEFLWQ--------------------------------------------EGH 162

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +    E     +K  +         DF +      ++          +        +++
Sbjct: 163 TVHSNAEEAKRLAKKMI-----GIYKDFIENYLAIPVIIGNKTERERFAGAEQTYTVEAM 217

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            ++     + ++ G   Y    +S      FK    +       S+G+ + R++  +I +
Sbjct: 218 MKDG----KALQSGTSHYLAQNFSKSFDIVFKNDKNEFENPYQTSWGV-STRLIGGLIMT 272

Query: 332 SHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +G+I P  +AP ++ ++ + A  + +     ++I+ +L K+   +  D    Q G 
Sbjct: 273 HGDDRGVILPPKIAPIQVDILELFAIKNPIVSIVTKQIFEKL-KIKFTLRIDSTDNQPGY 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSNN 445
           + + +++LG PL++ VG + +  ++V I  R T  +  + +E+V   + +      NN
Sbjct: 332 KASRSEVLGTPLRIEVGPRDLEKNQVTIVRRDTLEKHQVEVEKVFEKVEFLLEEIQNN 389


>gi|326471466|gb|EGD95475.1| prolyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 604

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 127/420 (30%), Gaps = 79/420 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 105 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 164

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 165 KEKDHIEGFAAEVAWVTHAGNSALEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 224

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +                                                    
Sbjct: 225 SVVRWEFKNPQPF----------------------------------------------- 237

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  +   T+V                 +++++++  I  Q T   
Sbjct: 238 LRTREFLWQEGHTAHLTREEAHTEVLQILQHYAHV-------YEELLAVPVIQGQKTDKE 290

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKDHY- 311
                ++   +   +P     + RGI+ G     G  +S     T +      D K    
Sbjct: 291 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPPL 346

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRD 363
            V   S+G+ + R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 347 HVWQNSWGL-STRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 405

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  +  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 406 EIEAIATVLSAAGVRIEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 465


>gi|124088770|ref|XP_001347228.1| Prolyl-tRNA synthetase [Paramecium tetraurelia strain d4-2]
 gi|145474039|ref|XP_001423042.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057617|emb|CAH03601.1| Prolyl-tRNA synthetase, putative [Paramecium tetraurelia]
 gi|124390102|emb|CAK55644.1| unnamed protein product [Paramecium tetraurelia]
          Length = 652

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 144/432 (33%), Gaps = 70/432 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  +I  +   G Y   P      + +  ++ +            P   SA  L 
Sbjct: 171 QQVIRKAELIEYYDVSGCYILRPWAYFIWEQIQRLLDDLIRTEDVENTYFPMFLSAKHLN 230

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E +M   F   ++S+R+LP    Q  
Sbjct: 231 TEKDHVEGFKAEVAWVTKYGQSDLNEPLAIRPTSETIMYPAFAKWVQSHRDLPLKVNQWT 290

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++   T E +      +   Y +++    L ++P+ 
Sbjct: 291 NIVRWEFKFPTPFIRTREFLWQEGHTAHSTREEAVKQVYTILDFYEQVYGE--LLAVPVI 348

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G     E     D   T        ++  IP          S +          
Sbjct: 349 K-----GIKTESEKFAGGDFTTT--------VETIIPQNGRGLQGATSHHLGQNFSKMFE 395

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               D   +K F +   +   + R I    +F+                           
Sbjct: 396 INFEDDKRQKAF-AWQTSWGFTTRSIGAMIMFH--------------------------- 427

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLS 373
                            D  G++ P  +A ++I +I I   D   +   + CE+I   L 
Sbjct: 428 ----------------GDDNGLVLPPRIAKYQIIIIPIIHKDLDEKQLNERCEQIRQILI 471

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K    V +D+      G +F   +  G P+++ +G     +++V +  R    +  + +E
Sbjct: 472 KQKLRVHFDNRDNYSPGWKFNKWEQKGVPIRLEIGPGEFKNNEVRVVQRFDNKKYQIKIE 531

Query: 433 EVINYASHRFSN 444
           E+ N  +    N
Sbjct: 532 EL-NQLNQILDN 542


>gi|302897411|ref|XP_003047584.1| hypothetical protein NECHADRAFT_85892 [Nectria haematococca mpVI
           77-13-4]
 gi|256728515|gb|EEU41871.1| hypothetical protein NECHADRAFT_85892 [Nectria haematococca mpVI
           77-13-4]
          Length = 1097

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 113/363 (31%), Gaps = 68/363 (18%)

Query: 94  LRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           + + D+N D  +   PT E +M   +   I+S+R+LP    Q     R E +     +R+
Sbjct: 55  MTIGDKNLDVPVAIRPTSEAIMYPYYSKWIRSHRDLPLRLNQWNSVVRWETKQTTPFLRT 114

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++  LT E +     ++   Y +I+    L ++P+       G    +E   
Sbjct: 115 REFLWQEGHTAHLTEEEAGKEVLEILELYAKIYED--LLAVPVVR-----GRKTKNERFA 167

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                          ++  IPS         S             A  D   E       
Sbjct: 168 GG--------YYTMTLEGYIPSNGRGIQGATSHCLGQNFSKMFDIAVQDPVGE------- 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                       GH+  +    S   S    G       V +                  
Sbjct: 213 ------------GHVHVWQN--SWAFSTRVIG-----VMVMIH----------------- 236

Query: 333 HDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSK-VGCDVFWDDM 384
            D KG++ P  VA  ++ ++ +               D  ++I A L       V  D  
Sbjct: 237 GDDKGLVLPPRVAKIQVVIVPVGISKKTTAEEKNRLLDQADEIRATLRNDARLRVDVDAR 296

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G     +F   +L G PL++  G K      V    R    +  + + E+         
Sbjct: 297 EGYTPARKFNDWELKGVPLRLEFGPKDAKKGVVSYTKRYNNEKGTIPIAEITTTVPKMLE 356

Query: 444 NNR 446
             +
Sbjct: 357 EIQ 359


>gi|219851928|ref|YP_002466360.1| threonyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|254783527|sp|B8GHN2|SYT_METPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219546187|gb|ACL16637.1| threonyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 609

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 139/430 (32%), Gaps = 57/430 (13%)

Query: 25  LMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS---AD 78
           LM    ++        G   WLP G+   D +   +       G   +  P +       
Sbjct: 198 LMRSKELVDYEPASDVGNLRWLPRGKIVRDLLADYVLHMVLEYGGSPVETPVMYDLGDKA 257

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL- 137
           ++      D +G+   R    N + M+        M  I R    S   LP   Y++   
Sbjct: 258 IYE---HADKFGERQYRFKSGN-RNMMLRFAACFGMFSIMRDMHISPNTLPIKMYELSTY 313

Query: 138 KFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            FR E R    G+ R R F M D +S  L  EG+ H + +                    
Sbjct: 314 SFRHEQRGEVIGLKRLRAFTMPDMHSLCLDMEGALHCFEEQLRL---------------- 357

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 G     +F    +T    VF           +          +  ++E  +   
Sbjct: 358 ------GWKSGEDF----ETELVGVFRCTRGFYEKYENWVKSIVAESRVPMLIEILSDRV 407

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMG 315
                  +    D            I+V     F  KY L         DG+  H   + 
Sbjct: 408 HYWIAKVDLAAIDGQGRPIENPTVQIDVESSTRFDIKYHL---------DGEVVHPPILH 458

Query: 316 SYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               G+  RV+ A++E++ +      P  +AP ++ LI +    +      +++  RL+K
Sbjct: 459 CSPTGSIERVICALLENTANQSVPQLPAWLAPTQVRLIPVA---ERHTSFADELCTRLNK 515

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDM 429
                  DD  E +G +   A +   P  +++G   +   K+ +  R         +E +
Sbjct: 516 AQIRTDLDDREESVGKKVREAGMDWVPYVIVIGDAEMETGKLTVTIRKLSEPRVPHKEQL 575

Query: 430 SLEEVINYAS 439
            +EE+I    
Sbjct: 576 DVEELITLVR 585


>gi|145534462|ref|XP_001452975.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420675|emb|CAK85578.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1348

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 6/201 (2%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L    +  ++  +  H+ + +     + HQ S G   + P G    + +   +R +
Sbjct: 311 SKKLLDEYVKIQKELALRDHRNVGKKQNLYLFHQLSPGSAFFYPSGAHIYNTLMNFLRRQ 370

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + +A LW  SG YD Y + +  +    +      P +      +F  
Sbjct: 371 YYIRGYQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGEYGLKPMNCPGHCLMFDM 430

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  F    +  R+E+     G+ R R F   DA+ F    +  +        
Sbjct: 431 IQHSYRDLPVRFADFGVLHRNEVHGALSGLTRVRRFQQDDAHIF-CRMDQIQEEIKSCLD 489

Query: 180 SYLRIFHRLGLKSIPMRAESG 200
               I+   G +   +   + 
Sbjct: 490 FLSYIYSLFGFEF-KLYLSTR 509


>gi|298245368|ref|ZP_06969174.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297552849|gb|EFH86714.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 483

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++       G  ++      F  ADG+  Y    S+G+ + R++  +I    D 
Sbjct: 222 MGDGKALQSATSHNLGQNFAKSFDIQFLDADGERKYCATTSWGL-STRMIGGIIMVHGDP 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            G+I P  +APF++ ++ I   DQ   V  +A E++   L      V  DD     G ++
Sbjct: 281 SGLILPPRLAPFQVVIVPIWRKDQDRAVVFEAVERLQKMLKGK-VRVKVDDSDNTPGWKY 339

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              ++ G PL++ +G + V ++ V +  RL   +E +S++ +      +    +  L
Sbjct: 340 NEWEMRGVPLRLEIGPRDVQNNNVVLVSRLDRSKEFVSIDNLETRLPEKLDEIQKAL 396



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 16/174 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R AE+A +  +    +I           P G    +++ +++ +    TG +    P L 
Sbjct: 27  RKAELADYAPVRGCMIIR----------PYGYALWEHIQSLLDQRFKDTGVMNAYFPLLI 76

Query: 76  SAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
               L  E+   + +  E+  +     +  ++ +   PT E ++   +   ++SYR+LP 
Sbjct: 77  PRSFLEKEAEHVEGFAPELAWVTRGGGEELEEPLAIRPTSETIIGHSYSRWVQSYRDLPL 136

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
              Q     R E R     +R+ EFL ++ ++   T E ++     M   Y   
Sbjct: 137 LINQWNNVMRWEKRTTL-FLRTSEFLWQEGHTAHRTLEEAEERTRMMLEVYRDF 189


>gi|253573561|ref|ZP_04850904.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847089|gb|EES75094.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 483

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R ++ G   Y GT ++      +   +    YV   S+G+ + R++ ++I    D
Sbjct: 222 MMKDGRAVQAGTSHYLGTNFAKAFDIQYLNRENVREYVHTTSWGV-STRLIGSLIMVHGD 280

Query: 335 GKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            +G+  P  VAP ++ +I I      +      ++++A L K G  V  DD    + G +
Sbjct: 281 DRGLALPPKVAPKQVMIIPIGPPKTWEAVVGRADELFAELKKAGIRVGIDDRADFRPGWK 340

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F   ++ G P+++ +G + + +    +  R++G ++ +  + ++         
Sbjct: 341 FNEYEMRGVPVRLEIGPRDMENGVCVLVSRISGEKKVVQQDRLVEEVQAMLEQ 393



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 74/187 (39%), Gaps = 20/187 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++++ ++++    A++  +  +           G   + P G +  +++ A +     
Sbjct: 19  FSRWYIDVIKK----ADLMDYSPVR----------GCIVFKPDGYEIWEHIQAELDRRFK 64

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E    + +  E+  + +    + ++ +   PT E ++  +
Sbjct: 65  ETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAAGEKLEERLAIRPTSETMIGHM 124

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E R     +R+ EFL ++ ++     + ++    +M
Sbjct: 125 YEKWIQSYRDLPVLINQWANVVRWEKR-TLPFLRTSEFLWQEGHTAHENEQEAREETMRM 183

Query: 178 FVSYLRI 184
              Y   
Sbjct: 184 LEIYRDF 190


>gi|115491451|ref|XP_001210353.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114197213|gb|EAU38913.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 564

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 101/203 (49%), Gaps = 25/203 (12%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L++R G + Q   GI+  LPLG +  D +  +I +                         
Sbjct: 29  LLIRGGFLRQAYSGIFHMLPLGLRVQDKLERLIDKHMRLLDMQ----------------- 71

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                   + R  DR +   +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE R
Sbjct: 72  --------VFRFLDRKESRFLLAPTHEEEITTLVGSLTKSYRDLPLRVYQISRKYRDEPR 123

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKD Y+FD + E +  +Y ++  +Y R+F+ L +  +   A+SG +GG
Sbjct: 124 PRQGLLRGREFIMKDLYTFDYSMEEALKTYGQVRAAYTRLFNELKIPYLVAVADSGNMGG 183

Query: 205 DLSHEFIVLADTGETQVFCSKDF 227
           +LSHEF   +  GE  V      
Sbjct: 184 NLSHEFHFPSSKGEDTVITCTSC 206



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              DDI          T        VH+        +    +   IE+GH F+ GT+YS 
Sbjct: 349 CAADDIDYTMLDRFPETNNGLNLVKVHDGDKCTKCGQGHLKTHTAIELGHTFHLGTRYSE 408

Query: 297 PMSATFK-------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            + A           ++ +   ++MG +GIG  R++ AV +S  D KG+ WP ++AP+++
Sbjct: 409 VLQACVMVDRATAGKSEDQTVPMEMGCHGIGVSRMITAVADSLADSKGLNWPRAMAPYEV 468

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++  K  +       EKIY  L+       D   DD  +Q+G +   ADL+G+P+ V+V
Sbjct: 469 IVVPTKGLEAD----AEKIYDVLASNPTSPFDTILDDRDKQMGWKLGDADLIGYPVIVVV 524

Query: 407 GSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFSN 444
           G  +     VE++  RL  +RE++ LE +  + +   + 
Sbjct: 525 GKGWKKQQTVEVQCRRLNNLRENVPLERLPEFVNSLLAQ 563


>gi|331233138|ref|XP_003329230.1| prolyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309308220|gb|EFP84811.1| prolyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 301

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/171 (40%), Positives = 99/171 (57%)

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+S+P LQS  LW  SGR +  G E+ RL DR   +++  PTHEE +T++ +S
Sbjct: 1   MERIGASEISMPLLQSQKLWDRSGRSNQAGPELFRLKDRKGSSLLLSPTHEEEVTNLVKS 60

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+S + LP   + I  KFRDE RPR G++RSREF+MKD Y+FD     +  SY ++  +
Sbjct: 61  DIQSGKQLPIKLFHIGRKFRDEARPRAGLLRSREFIMKDLYTFDADASAAMASYKEVQEA 120

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF  +G+      A+SG IGG  SHE+   + +GE  +          
Sbjct: 121 YRRIFETIGIPFSVAEADSGAIGGATSHEYHYKSSSGEDSLIHCTRCPYTA 171


>gi|106364390|dbj|BAE95216.1| predicted threonyl-tRNA synthetase [unclutured Candidatus
           Nitrosocaldus sp.]
          Length = 685

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/486 (17%), Positives = 160/486 (32%), Gaps = 89/486 (18%)

Query: 17  DAEIASHKLMLRTGMI-HQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           D E    +LM R  +  H+ +   G   + P G+     +   +  +    GA+E+  P 
Sbjct: 213 DEEPPHVRLMKRLAIADHEPASDAGNLRFYPKGRLIKSLIEQYVTRKVIEYGAVEVETPI 272

Query: 74  LQSADLWVES-GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           +   +    S   Y +       + +   K              + +    SY++LP   
Sbjct: 273 MYDVE--HPSLASYFNRFPARQYMIESEGKEFFLRFAACFGQFLMAKDFTISYKHLPLKI 330

Query: 133 YQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           Y++    FR E      G+ R R F M D ++     E +K    K      ++   LG+
Sbjct: 331 YELTRYSFRREKSGELVGLRRLRAFTMPDCHALCRDIEQAKQEMLKRLELSKQVIEGLGI 390

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      +  D+     V +D                      +    I    ++E
Sbjct: 391 S----------LMDDVEVAIRVTSD------------FYNENRGFIAELVRRIGKPVLLE 428

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +W+  +            D+L +   +S   I+V +    G +Y       F   DG   
Sbjct: 429 EWSERFFYFVLKWEFNFVDNLAKASALSTDQIDVEN----GARY----GIYFVDEDGSRK 480

Query: 311 YVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQV---- 360
              +   S      RV+ A++E ++    +GK  + P  ++P ++ LI +     V    
Sbjct: 481 NPIILHNSPSGAVERVMYALLEKAYRMQKEGKTPMLPLWLSPTQVRLIPVSTRGAVKGSS 540

Query: 361 -----------------------------------------CRDACEKIYARLSKVGCDV 379
                                                      D C  I  RL +    V
Sbjct: 541 SSSNNNNKDDGDGGRSGESSMGVEANSNSSSNSSNNVSSITYLDYCNSIMHRLERSSIRV 600

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E +G +   A++   P  V+VG K ++  ++ ++ R +G   +MS+EE+ +   
Sbjct: 601 DIDDRDESVGKRIREAEMEWIPYIVVVGEKEIASDRLSVRDRASGKVREMSVEELEHEIV 660

Query: 440 HRFSNN 445
               + 
Sbjct: 661 SAVKDK 666


>gi|167393549|ref|XP_001740621.1| prolyl-tRNA synthetase [Entamoeba dispar SAW760]
 gi|165895194|gb|EDR22941.1| prolyl-tRNA synthetase, putative [Entamoeba dispar SAW760]
          Length = 536

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 140/429 (32%), Gaps = 65/429 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           ++++++G+I  +   G Y   P      +N+   +     + G      P   S A L  
Sbjct: 53  QIVVQSGLIEYYDISGCYILKPSAYGIWENIQHFMDTRIKKMGVENAYFPCFVSQATLKK 112

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E ++   F++ I  +R+LP    Q   
Sbjct: 113 EEDELNGFTPEVAWVTKSGQSDLQEPIALRPTSETIIYPAFKNWISGHRDLPIKVNQWCN 172

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E    +  +R+REFL ++ ++   T   ++   +++   Y  ++    L ++P+  
Sbjct: 173 VVRWEFSHPYPFIRTREFLWQEGHTAFATQIEAEKECHQILELYASVYED--LLAVPV-- 228

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S         GET             P        +  +     +      
Sbjct: 229 ----IRGKKS--------KGET------------FPGAYYSLT-VECIIPTNGRSVQAAT 263

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +            +      + + +   + +   T+       T     G     +    
Sbjct: 264 SHHLGQTFSKLFQIEFEDEDNKKQLVWQNSWGLSTRSIGVTIMTHGDNKGIIVPPRAAQK 323

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +        +I   H G                     +D++     E++   L   G 
Sbjct: 324 QVV-------IITLHHKG-------------------SPNDEM-DAKAEELTQILLDNGI 356

Query: 378 DVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             F D   E  + G +F+  ++ G P+++ +G +     KV I  R  G + + + E++I
Sbjct: 357 RAFAD-TNEMHKPGWKFSEYEMRGIPIRIELGPRDYEGKKVVIVRRDNGTKSESTWEDLI 415

Query: 436 NYASHRFSN 444
                    
Sbjct: 416 QNIKKTIDE 424


>gi|255019144|ref|ZP_05291270.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 182

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 3/183 (1%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L T  I +  +G+  WLP G      +   I +++ R G   +  
Sbjct: 2   EAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLGYNHVYT 60

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SYR LP  
Sbjct: 61  PIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPIR 120

Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ +  R E+     G+ R R   + DA+ F + P+  K  + ++    L ++    +
Sbjct: 121 IAELGMMHRYEMSGALSGLQRVRGMTLNDAHVF-VRPDQIKDEFKRVVELILEVYKDFDI 179

Query: 191 KSI 193
              
Sbjct: 180 TDY 182


>gi|313665217|ref|YP_004047088.1| proline--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949831|gb|ADR24427.1| proline--tRNA ligase [Mycoplasma leachii PG50]
          Length = 474

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 141/415 (33%), Gaps = 70/415 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P G +  + +   + EE  +     +  P L    L+  E    D +  E+  
Sbjct: 35  KGTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIAT 94

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      + ++ +   PT E +M D F + I SYR+LP  + Q     R E         
Sbjct: 95  VTRVGQKKLEENLFIRPTSEVLMMDYFSNEINSYRDLPLIYNQWCNVMRWEKT------- 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +R FL         T E      + +  SY                              
Sbjct: 148 TRPFLR--------TIEFLWQEGHTVHSSY------------------------------ 169

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E + FC K            D  +  +   ++           +          
Sbjct: 170 -----NEAENFCLKIL----------DIYEKFAKEVLLLPVICGKKTEKEKFAGAKDTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E+     + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +
Sbjct: 215 IESLMFDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMT 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  +A      I    + +      E I  +LS    DV  D+  +  G +
Sbjct: 274 HSDDNGLVLPSKIA-PIQIQIIQIKNIEQIDQVVENIKEKLSDYRIDV--DNSDKSFGFK 330

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
            + A++ G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 331 ISEAEIKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|194246824|ref|YP_002004463.1| prolyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|193807181|emb|CAP18622.1| Prolyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 473

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 132/408 (32%), Gaps = 57/408 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP G    + +     +E  +T    +  P L              + + + + 
Sbjct: 36  KGFIIYLPDGYFLWEQIQKFFNKELQKTNHQNVYFPLL--------------FTENLFK- 80

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               +K  I G   E            S + +              LRP           
Sbjct: 81  ---KEKKHIQGFQPETAFVTFAGDKNLSEKLI--------------LRPT---------- 113

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                 F    E +  SY  +   Y +         I     + P       EF+     
Sbjct: 114 --SEVLFSQHYEKTITSYRDLPKLYNQWC-----NVIRWEKSTRPFLRGK--EFLWQ--- 161

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E     +                  +    +   +        +     +     E+  
Sbjct: 162 -EGHTAHANAQEAMSETLSIIKLYQKLGKELLAIPFVIGKKTELEKFAGAIETYSIESLM 220

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + GTK+S   +  F+  D K  +V   S+GI + R++ A++    D +
Sbjct: 221 PDGQSLQSGTSHFLGTKFSEAFNIKFQDLDNKIKFVYQTSWGI-STRLLGALVMVHGDDE 279

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+++P  +AP +I +I ++  D        +I+  L      V  D   +  G +F+  +
Sbjct: 280 GLVFPPYIAPLQIIIIPLQPKDANVIKFSNEIFEVLKNK-YRVKLDVQNKNTGWKFSQYE 338

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + G PL++ VG   +   ++ +  R   +++    ++++      F N
Sbjct: 339 MKGIPLRIEVGKHGLEKDEITVFTRYNFLKQQFKKDDLLTKIPFLFKN 386


>gi|207092594|ref|ZP_03240381.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 372

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 83/166 (50%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E       + +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG YGIG  R+
Sbjct: 192 ESDRCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYGIGISRL 251

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G D   DD 
Sbjct: 252 LSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGVDALLDDR 311

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             + G++    +L+G  L +IVG + +   + E   R    ++ + 
Sbjct: 312 DARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLK 357


>gi|45190586|ref|NP_984840.1| AEL021Cp [Ashbya gossypii ATCC 10895]
 gi|44983528|gb|AAS52664.1| AEL021Cp [Ashbya gossypii ATCC 10895]
          Length = 670

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/444 (14%), Positives = 135/444 (30%), Gaps = 76/444 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++++  ++  +   G Y   P      + +      +    G   +  P  + S  L 
Sbjct: 182 QQVLVKGDLLDYYDISGCYILKPASYCIWERIQEWFNGKIRSMGVQNVCFPMFISSRALE 241

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E  M              PF F +  
Sbjct: 242 KEKDHIEGFAPEVAWVTKAGSSDLEEPIAIRPTSETAMY-------------PF-FAKWV 287

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +RD        +  +                                 R   K     
Sbjct: 288 QSYRD--------LPLKYNQWTSVV-------------------------RWEFKHPQPF 314

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  +    +V    D  +         + +++++  +    T   
Sbjct: 315 LRTREFLWQEGHTAHLTKEEATDEVMQILDHYEQV-------YVELLAVPVVKGTKTENE 367

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY---VQ 313
                     +   +P+    + RGI+     + G  +S   +   +   G  H      
Sbjct: 368 KFAGADFTTSVEGYIPQ----TGRGIQGATSHHLGQNFSKMFNICVENPLGPQHPKVHAY 423

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACE 366
             S+G+ + R +  ++ +  D KG++ P  VA  ++ ++ +               D+  
Sbjct: 424 QNSWGL-STRSIGVMVMTHSDNKGLVIPPRVAQHQVVILPVGITAKTKEDVRSKIHDSAR 482

Query: 367 KIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            I  RL K G  V  D       G +FA  +L G PL++  G K +  ++V    R  G 
Sbjct: 483 AIENRLHKAGIRVLGDYADNYTPGWKFAQYELKGVPLRLEFGPKDMEKAQVTAVRRNDGA 542

Query: 426 REDMSLEEVINYASHRFSNNRPVL 449
           +  + L ++             +L
Sbjct: 543 KISVPLADLEERIPQILDEMHQLL 566


>gi|307354084|ref|YP_003895135.1| threonyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157317|gb|ADN36697.1| threonyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 610

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 144/445 (32%), Gaps = 53/445 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           P+  E  R  E+  ++ +   G           W+P G+   D ++  +       G + 
Sbjct: 193 PLHVELMRAKELVDYEPLSDVGHHR--------WMPKGKIIRDLLSDYVLGLVLNYGGMP 244

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   D    +     +G+   R    N + M+        M  I      S   L
Sbjct: 245 VETPVMYDLDNHAINEHAGKFGERQYRFKSGN-RNMMLRFAACFGMFSIMHDMHISPNTL 303

Query: 129 PFTFYQIQL-KFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           P   Y++    FR E +    G+ R R F M D +S  L    +   + +  +       
Sbjct: 304 PMKMYELSTYSFRHEQKGECIGLKRLRAFTMPDMHSMCLDMNQTLECFEEQLM------- 356

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
                          +G     +           VF   +               +  + 
Sbjct: 357 ---------------MGWQTGKDLEYP----LAAVFRCTEDFYKDHEEWVKKIVRMSEVP 397

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            ++E  +          +    D            I+V     F  KY       +   +
Sbjct: 398 VLIETLSDRVHYWIAKIDLAAIDGQGRPIENPTVQIDVESAERFDIKY-------YSVRN 450

Query: 307 GKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            +     +     G+  RV+ A++E++   +  + P  ++P ++ ++ + +      +  
Sbjct: 451 EEVRPPIIHCSPTGSIERVICALLENTASQEVPMLPVWLSPTQVRILPVSSK---HTEYA 507

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++  +++  G    +DD  E +G +   A +   P  V+VG   +   K+ +  R    
Sbjct: 508 GELCKKINGAGVRCDFDDREESVGKKIREAGMDWVPYVVVVGDSEIESGKLPVTIRSMSK 567

Query: 426 -----REDMSLEEVINYASHRFSNN 445
                +E+M+ E++I+       N 
Sbjct: 568 PKAPYKEEMTAEDLISKVKEDIGNR 592


>gi|320451068|ref|YP_004203164.1| prolyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320151237|gb|ADW22615.1| prolyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 477

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 5/170 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D 
Sbjct: 218 MRDGKALQSGTSHYLGENFARAFDIKFQDKDLQVKYVHTTSWGL-SWRFIGAIIMTHGDD 276

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           +G+I P  +AP ++ ++ I   +  +   +A   +  RL + G  V  DD      G +F
Sbjct: 277 QGLILPPRLAPIQVVIVPIYREESREKVLEAAFDLKQRLLQAGLRVHLDDRDQHTPGYKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +L G P ++ +G K +   +  +  RL G +E ++LE +      + 
Sbjct: 337 HEWELKGVPFRIELGPKDLEAGEAVLASRLGG-KERLTLEALPTVLPEKL 385



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 16/192 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     E  + AE+A +  +  T ++           P G    +N+  ++     
Sbjct: 10  QSQDFSEWYLEVIQKAELADYGPVRGTIVVR----------PYGYALWENIQGVLDRMFK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P       L  E+   + +  E+  +     +  ++ +   PT E V+  +
Sbjct: 60  ETGHQNAYFPLFIPMSFLKKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYM 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   IKSYR+LP    Q     R ELR R   +R+ EFL ++ ++   T E ++    +M
Sbjct: 120 WSKWIKSYRDLPQLLNQWGNVVRWELRTR-PFLRTSEFLWQEGHTAHATREEAEEEVRRM 178

Query: 178 FVSYLRIFHRLG 189
              Y ++    G
Sbjct: 179 LSIYAKLAREYG 190


>gi|284161285|ref|YP_003399908.1| threonyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011282|gb|ADB57235.1| threonyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 618

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 143/434 (32%), Gaps = 51/434 (11%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           +LM R  +         G   + P G+     +   +  +    GA+E+  P +      
Sbjct: 198 ELMKRLEIADYEPASDSGHLRYYPKGRLIKSLLEEFVTLKCIEYGAMEVETPIMYDRSH- 256

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKF 139
               RY         +   + +              I    + +Y+NLP   Y++    F
Sbjct: 257 PTLRRYLERFPARQYIIKGDKREFFLRFAACFGQFLIAHDSVITYKNLPMKLYELTRYSF 316

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E R    G+ R R F M D ++F    E +K  +   +   + +   +G+        
Sbjct: 317 RKEQRGELVGLRRLRAFTMPDMHTFVRDMEQAKQEFFNQYKLSVEVLKGIGIDP------ 370

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                           +  E  V  +KDF +           DI+    +VE W   +  
Sbjct: 371 ----------------EDYEVAVRVTKDFYEQN-KEFIHSLVDILRKPILVEMWDQRFFY 413

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GS 316
                     D+L +   +S   I+V +              ++   +G+     +   S
Sbjct: 414 FVLKFEFNFVDALEKASALSTVQIDVENAER--------YDISYVDENGEKKRPLILHCS 465

Query: 317 YGIGAMRVVAAVIESSHD----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                 R + A++E +H     GK  + P  ++P ++ +I +    +   D   ++   L
Sbjct: 466 LSGAIERCMYALLEKAHMNMERGKLPMLPVWLSPTQVRVIPV---SERYLDRAIEVANEL 522

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIK---HRLTGIRE 427
           S+ G     DD  E +G +   A     P   ++G   V      V I+         R 
Sbjct: 523 SRRGIRADVDDRDETLGKKIRDAGREWIPYVAVIGEDEVKGGFLTVTIRAESTLKEQKRV 582

Query: 428 DMSLEEVINYASHR 441
            MS++E+       
Sbjct: 583 KMSIDELAERVKKE 596


>gi|188590702|ref|YP_001920953.1| threonyl-tRNA synthetase 1 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500983|gb|ACD54119.1| threonyl-tRNA synthetase 1 [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 344

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 132/367 (35%), Gaps = 34/367 (9%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           +  +G Y+ Y K+M       D+  +           IF    +SY+ LP    ++    
Sbjct: 2   YETTGHYNKYSKDMYPSFYAYDEDYVMRSVTCPNHYAIFLQQERSYKELPLRITEMSTLI 61

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R +      G+ R+  F + DA+ F  + +  +  + K+      +  + G+ S      
Sbjct: 62  RKDRSSELSGLYRTNTFTLNDAHIF-CSQDNIELEFLKIIDFIKCVNDKFGISSHVRYRL 120

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           S     D S++  +     E+    S++ ++  +   + DF                   
Sbjct: 121 SF---SDFSNDKYI---KNESLWKKSENILESILNKSDLDFF----------ISKDKACF 164

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSY 317
                +  + +   +   ++   ++    F    K+    +  F   +  K+  V +   
Sbjct: 165 YGPKLDVLIENYNGKEYILTTVQLD----FILPGKF----NVYFINNNFEKEQPVVIHRA 216

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
              ++    A +   + G   I+P  +AP ++ +I     +       ++I   L ++  
Sbjct: 217 LPFSIERTIAFLTEYYQG---IFPFWLAPEQVVIIPTTLDNIK---YSQQIEYHLKEIDI 270

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +  D    +   +   A L   P  VIVG K   ++ V I++R    ++ ++LE+ I  
Sbjct: 271 RIECDLRDTRFNKKIKQATLNRTPYIVIVGDKESKNNMVTIRNR-NNEQQFLTLEDFIQK 329

Query: 438 ASHRFSN 444
              +  N
Sbjct: 330 LDTKNRN 336


>gi|307330032|ref|ZP_07609183.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306884293|gb|EFN15328.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 471

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/463 (15%), Positives = 143/463 (30%), Gaps = 86/463 (18%)

Query: 1   MRRSKYFLPILQENPR-------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
           M ++    P  ++ PR        AE+A +  +  T +I           P G    + +
Sbjct: 1   MAKTPVLTPRAEDFPRWYQDVINKAELADNGPVRGTMVIR----------PYGYGLWERM 50

Query: 54  NAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGP 108
              +       G      P       L  E+   + +  E+  +        ++ ++  P
Sbjct: 51  QQDMDARIKAVGVQNAYFPLFIPQSYLAKEADHVEGFAPELAVVTHGGGKELEEPVVVRP 110

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T E ++ + F   ++SYR+LP    Q     R ELRPR   +R+ EFL ++ ++   + E
Sbjct: 111 TSETIVNEYFSKWVQSYRDLPLLINQWANVVRWELRPRL-FLRTTEFLWQEGHTAHASYE 169

Query: 169 GSKH-SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            ++  +       Y R           + A    +G   + E    A    T        
Sbjct: 170 DARDFAARIHREVYARFMED-------VLAMDVVLGRKTARERFAGALNTLT-------- 214

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               +     D   +    S         A  +   ++     L       +    VG  
Sbjct: 215 ----LEGMMGDGKALQLGTSHELGQNFARAFHTSYLSKDGEQELVWQTSWGSTTRMVG-- 268

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                     +       +G     ++ S                               
Sbjct: 269 ---------ALVMMHGDDNGLRIPPRLAS------------------------------I 289

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIV 406
           ++ ++ IK  D        +I   LS  G  V  DD  +   G +    +L G P++V V
Sbjct: 290 QVVVLAIK-GDDAVLAKVREIGELLSAAGVRVHVDDRTDTPFGRRAVDWELKGVPVRVEV 348

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           G + +      +  R+ G +E +  E +          ++ +L
Sbjct: 349 GPRDLESGTAMVARRIPGGKEPVRAELLPELLPKVLEEDQALL 391


>gi|221061291|ref|XP_002262215.1| bi-functional aminoacyl-trna synthetase [Plasmodium knowlesi strain
           H]
 gi|193811365|emb|CAQ42093.1| bi-functional aminoacyl-trna synthetase,putative [Plasmodium
           knowlesi strain H]
          Length = 715

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 132/419 (31%), Gaps = 63/419 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++++ +I  +   G Y   P      + +     +E  +        P  +    L  
Sbjct: 237 QVIVKSELIEYYDISGCYILRPASYYIWECLQTFFNKEIKKLDVENSYFPLFVTKNKLEK 296

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D    + +   PT E +M  +F   I+S+R+LP    Q   
Sbjct: 297 EKNHIEGFSPEVAWVTKYGDSTLPEEIAIRPTSETIMYSVFSKWIRSHRDLPLKLNQWNT 356

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++     E +      +   Y R +            
Sbjct: 357 VVRWEFKQPTPFIRTREFLWQEGHTAHKNEEEAVKMVFDILDLYRRWYEEC--------L 408

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I G  S         GE     +         SEN       + + +   +   + 
Sbjct: 409 AVPIIKGIKSE--------GEKFGGANFTSTAEAFISENGRAIQAATSHYLGTNFAKMFK 460

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              +  NEK       +   + R I +             M  T     G     ++  +
Sbjct: 461 IEFEDENEKKQYVHQTSWGCTTRSIGI-------------MIMTHGDDKGLVLPPKVAKF 507

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +                             + ++     + V  + C+ I   L     
Sbjct: 508 KVVI---------------------------VPILYKNTDENVIFNYCKDIEKVLKNAQI 540

Query: 378 DVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +   DD      G +F   +L G P+++ VG K + ++      R T  + ++  E V+
Sbjct: 541 NCILDDRELYSPGYKFNHWELRGVPIRIEVGPKDIQNNSCLFVRRDTNEKFNVKKESVL 599


>gi|84489803|ref|YP_448035.1| prolyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|114152212|sp|Q2NFL1|SYP_METST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84373122|gb|ABC57392.1| ProS [Methanosphaera stadtmanae DSM 3091]
          Length = 469

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 152/449 (33%), Gaps = 74/449 (16%)

Query: 1   MR-RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           M+  S++F  IL+E    AE+   +  ++         G+  WLP G +        ++E
Sbjct: 1   MKNFSEWFHNILEE----AELMDARYPIK---------GMSVWLPRGFQIRKYALNALQE 47

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
             ++    E+  P                    ML       K  I+    EE +  + +
Sbjct: 48  LLDK-DHEEVLFP--------------------MLIPQSELAKEAIHVKGFEEEVYWVTK 86

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                 R+L              LRP                 F L              
Sbjct: 87  GGK---RDLNEHLA---------LRPTS--------ETSIYPMFSLW-------VRSHMD 119

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             ++++  +          + P+          +    ET    + +        E  + 
Sbjct: 120 LPIKVYQTVN-TFRYETKHTRPLIR-----VREITTFNETHTAHATEEEAEKEVMEGIEI 173

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                 + +   ++       D      +    +      + +++  +   GT ++    
Sbjct: 174 YKTF-FDELGIPYSISKRPEWDKFPGSKYTMAFDMIMPDGKTLQIATVHNLGTTFAHTFD 232

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAH 357
             F+  DG   YV    YG+ + RV+A++I +  D KG+  P  VAP ++ +I I  K +
Sbjct: 233 IQFENEDGTHDYVHQVCYGL-SDRVIASLIAAHGDEKGLSLPPVVAPEQVIIIPIIFKEN 291

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             V  +  + +   L   G  V  D    + G ++   +  G PL++ VG + + ++ + 
Sbjct: 292 QDVVLNFTDNLEKLLKNNGIRVKQDKRELRPGKKYYEWEKRGVPLRIEVGPRDIENNTIV 351

Query: 418 IKHRLTGIREDMSLEE--VINYASHRFSN 444
           I  R TG +E +  +E  +++    R  +
Sbjct: 352 INRRDTGDKEFVDYDENTIVDVVKDRLDS 380


>gi|126465876|ref|YP_001040985.1| threonyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|166225505|sp|A3DN67|SYT_STAMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126014699|gb|ABN70077.1| threonyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 614

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 124/353 (35%), Gaps = 44/353 (12%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSREFLMK 158
           +++  +           + R  I SY+NLPF  +++   +R E R    +  R R+F M 
Sbjct: 278 DNEKFVLRYAACHQQFAMLRDWIISYKNLPFGMFEVADSYRLEQRGELNLCFRLRKFYMP 337

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D +  +     +      +    L    ++G K +                         
Sbjct: 338 DLHILNRDLNEAIKISRIVQDKILEEIAKIGRKYV------------------------- 372

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             ++               +F    +   +V    +            + D+L   + ++
Sbjct: 373 -ALYNVTSDFFDKYRDILIEFVRRENYPVLVSVIPSGIYYWVLNVEYHIIDNLNRPREIA 431

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIE----SS 332
              I++G+    G ++    + T+    G+ H+  +    I     R +  + +      
Sbjct: 432 TFQIDIGN----GERF----NITYTDEKGEKHHPVIIHTAIIGGIERFIYTIFDTAALME 483

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +GK    P  +AP ++ +I IK       D  EK+  ++   G  V  DD GE +G + 
Sbjct: 484 KEGKTPYIPTWLAPVQVRIIPIKN---EYLDYAEKVAEKIENAGFRVDIDDRGESLGKKI 540

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             A     P  V++G + V  + + ++ R T  ++ M  +E+I        N 
Sbjct: 541 RDAGREWIPYIVVIGEREVRSNTINVRIRRTNDQKVMVTDELIRILEEETKNY 593


>gi|159041076|ref|YP_001540328.1| threonyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|189083601|sp|A8MBZ5|SYT_CALMQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157919911|gb|ABW01338.1| threonyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 613

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 139/412 (33%), Gaps = 47/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G   + P     L+ ++    +     G    ++    +        S     +G+ M  
Sbjct: 219 GHMRYGPYATVMLELLDDYSYQVAKSLGIPVFKVKGTNMFRLSDKAISEHAGLFGERMYI 278

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSRE 154
                +  M Y    ++    + +  + SYRNLP    +I   +R E      +  R R 
Sbjct: 279 TESDEELVMRYAACFQQF--AMIKDWVLSYRNLPLGMLEIADSYRYEQPGETVLCFRLRR 336

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F    + +     ++         R+G   + +         ++S EF    
Sbjct: 337 FYMPDLHIFVKDLKEAMDVGLRLHAKIFEEIRRIGRDYVSLY--------NVSKEFFDQ- 387

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                  +         +V                 + D L   
Sbjct: 388 -----------------NKDYLVELARREGKPILVRVLEGAKYYWVLNVEYHIIDELKRP 430

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIE--- 330
           + ++    ++G+   FG KY           +   + V + +  +G+  R + A+++   
Sbjct: 431 REIATFQFDIGNAQRFGIKYRDE-------GNNIKYPVIIHTAILGSIERFIFALLDTAA 483

Query: 331 -SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  +GK    P  + P ++ +I + +      +   ++  R+ + G  V  DD  E +G
Sbjct: 484 INEANGKVPALPTWITPVQVRVIPVSSG---YNEGAIELARRIEEAGFRVEVDDRDETVG 540

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +   A+ L  P  V+ G +      + ++ R  G +  MS+EE++N  +  
Sbjct: 541 RKIRDAETLWVPYIVVFGEREAKTGSLSVRVRGVG-QVSMSIEELLNRLNEE 591


>gi|75523950|sp|Q7X2P1|SYP_SPHEL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32188210|gb|AAP46176.1| putative prolyl-tRNA synthetase [Sphingomonas elodea]
          Length = 510

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 139/434 (32%), Gaps = 94/434 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG      P       +  E+   D + KEM  +
Sbjct: 35  GCMVIRPWGYGIWERIQRLLDDRIKATGHENCYFPLFIPLSYFEKEAEHVDGFAKEMAVV 94

Query: 97  ADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
                               ++ ++  PT E V+       ++S+R+LP    Q     R
Sbjct: 95  THHRLIQKDGRLVPDPEAKLEEPLVVRPTSETVIGAAMSRWVQSWRDLPVLINQWANVVR 154

Query: 141 DELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            E       MR+R FL    + +    T   +     +                     E
Sbjct: 155 WE-------MRTRMFLRTAEFLWQEGHTAHATVEEAQE---------------------E 186

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +  +         V  D  ET +       + P            S+ +           
Sbjct: 187 TRKM-------LEVYRDFAETCLAMPVVAGEKPENERFPGAVSTFSIEA----------- 228

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                                + ++ G   + GT +S      F+ ++G+    Q  S+G
Sbjct: 229 ----------------MMQDGKALQAGTSHFLGTTFSSAQDIKFQNSEGQFELAQTTSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKV 375
           + + R++  +I    D  G+  P  VAP++I ++ +   +  D    D C+ + A L+K+
Sbjct: 273 V-STRMIGGLIMVHGDDDGLRVPPMVAPWQIVIVPMLRDQPEDAATIDYCKSLQAELAKL 331

Query: 376 -----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                      D    +  ++       G P+ + VG + V+   V +  R    RED  
Sbjct: 332 TALGEPVRALLDLKAVKAQTKRWGWVKKGAPIVIEVGGRDVAGGNVSVIQRNKLYREDGK 391

Query: 431 LEEVI----NYASH 440
           L+  I    ++ + 
Sbjct: 392 LDSRIMPRGDFVAE 405


>gi|294933722|ref|XP_002780830.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239890921|gb|EER12625.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 341

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 19/184 (10%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R ++     + GT ++      F+  +G+  + +  S+G    R +  +I    D K
Sbjct: 47  CNGRAVQGATSHFLGTHFAKMFGIEFEDRNGEKKFAEQTSWGFT-TRSIGVMIMEHGDDK 105

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR-----------DACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  ++ ++ I       +           + C+ +Y  L+  G  V  DD  
Sbjct: 106 GLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKTMIGEKCKSLYEDLNANGVRVVLDDRD 165

Query: 386 -EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG------IREDMSLEEVINYA 438
            +  G +F   +L G PL++ VG+K +    V    R TG          + ++E +   
Sbjct: 166 DKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNTGKKSQEAEHSSVKVKEALESI 225

Query: 439 SHRF 442
               
Sbjct: 226 QSEL 229


>gi|323348900|gb|EGA83137.1| YER087W-like protein [Saccharomyces cerevisiae Lalvin QA23]
          Length = 484

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 115/215 (53%), Gaps = 5/215 (2%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D      +  + +   
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDG 183

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             S               H+  +    P++++++ 
Sbjct: 184 QYSGDVDCKYALT---KDHSTLICFYYPKDRQLNW 215



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 215 DTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +  SK    MD  + S++   D  +              +  D    ++     
Sbjct: 243 EKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGKCE 302

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIES 331
           E +    + IEVGHIF  G KYS P++  F   + K+     MG YGIG  R+V A+ E 
Sbjct: 303 EGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVGAIAEL 362

Query: 332 SHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQ 387
             D  G  WP  +AP+K+S+    N   + Q  +D   K+    +     +   D   E+
Sbjct: 363 GRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQNLQNDILDQFNEK 422

Query: 388 --IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             IG++  ++  +G PL VIVGSK   + ++EI+    G +
Sbjct: 423 LGIGARIKLSHAMGIPLCVIVGSKSWPNVEIEIRGIRWGEK 463


>gi|289642346|ref|ZP_06474494.1| prolyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289507878|gb|EFD28829.1| prolyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 467

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 74/173 (42%), Gaps = 3/173 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + +++      G  ++      F GADG+ H     S+G  + R++  +I +  D
Sbjct: 215 MMGDGKALQMATSHELGQNFARAFDIDFLGADGQRHLAWTTSWG-SSTRMIGGLIMAHGD 273

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
             G+  P  +AP ++ ++ ++  D    +   +I   L   G  V  D   G   G +  
Sbjct: 274 DNGLRIPPRLAPVQVIVLPVR-DDAALLERVSQITEGLQAAGVRVQLDARPGLSFGRRVT 332

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            A+L G P++V +G + ++   + +  R T  +  + L++V+        + +
Sbjct: 333 DAELKGIPVRVEIGPRDLAAGSITLARRDTSEKITVPLDDVLARVPALLDDVQ 385



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 19/187 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F    Q+    AE+A +  +  T +I           P G    + + A +      TGA
Sbjct: 11  FPRWYQDVLAKAELADNGPVRGTMVIR----------PYGYAIWERMQADVDARIKATGA 60

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSH 121
           +    P       L  E+   + +  E+  +        ++ ++  PT E V+ +     
Sbjct: 61  VNAYFPLFIPESYLRREAQHVEGFSPELAVVTHGGGKELEEPVVVRPTSETVIGEYMAKW 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            +SYR+LP    Q     R ELRPR   +R+ EFL ++ ++  +    +     ++    
Sbjct: 121 TQSYRDLPLLLNQWANVVRWELRPRL-FLRTSEFLWQEGHTAHVDQADAAAYARRIH--- 176

Query: 182 LRIFHRL 188
           L ++   
Sbjct: 177 LEVYREF 183


>gi|315187358|gb|EFU21114.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 477

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 4/178 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF+   G   YV   S+G+ + R++ AVI +  D
Sbjct: 215 MMQDKKALQAGTSHFLGQNFAKAFDVTFQTQAGSLDYVWATSWGV-STRLIGAVIMAHSD 273

Query: 335 GKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
            +G++ P  +AP +  +I I          D  ++++ARL++ G  V  D D     G +
Sbjct: 274 NRGLVLPPRIAPTQAVIIPIYTKKTVDQVADYAKRVFARLTEAGLSVEMDLDDQNSPGWK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           FA  +L G P++V VG + +   K  +  R TG +  +S+  +           +  L
Sbjct: 334 FAEWELRGVPIRVEVGPRDMEQEKAVLVRRDTGEKRAVSVSRLPEEIPVLLEEIQKTL 391



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 6/153 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    + + + +      TG      P L        E+   + +  E+  
Sbjct: 32  KGCMVIRPRGYAIWEKIQSHLDRMFKETGHQNAYFPLLIPESFLHKEAEHVEGFSPELAV 91

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ ++  PT E ++  +++  I+SYR+LP    Q     R E R R   +R
Sbjct: 92  VTHGGGEALEEPLVVRPTSETIIWSMYKKWIQSYRDLPLLINQWANVVRWEKRTRL-FLR 150

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + EFL ++ ++   T E ++    +M   Y + 
Sbjct: 151 TTEFLWQEGHTAHATREEAEEEALRMLHVYRKF 183


>gi|268323272|emb|CBH36860.1| threonyl-tRNA synthetase [uncultured archaeon]
          Length = 626

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 156/467 (33%), Gaps = 65/467 (13%)

Query: 5   KYFLPILQENPRDAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREE 60
           K+F+   ++     +I  H +LM R  +         G   + P G+     +   +R+ 
Sbjct: 185 KFFVYESEKRREVDKIPPHVELMKRLEIADYEPASDPGNMRFYPKGKLIKGLLEDYVRKS 244

Query: 61  QNRTGAIEMSVPTLQSADLWVESGR------YDSYGKEMLRLADRNDKAMI-YGPTHEEV 113
            +  GA+E+  P + S      +G        + +      +  +  K  +    +    
Sbjct: 245 VSEYGAVEVETPIMYS------TGHPALKDYLERFPARQYSMVGKGGKPDLFLRFSACFG 298

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
              + +    SY+NLP   +++   FR E R    G+ R R+F M D ++       +  
Sbjct: 299 QFLMSKDMSISYKNLPLKIFELAPSFRKEKRGELVGLRRLRKFTMPDMHTLCRDMNEALD 358

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            + K +   +++   +G  +              + EF                      
Sbjct: 359 EFKKQYEFCIQVLEGIGFSTSDYEVAIR-----FTKEFYD------------------AN 395

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                D   I     ++E W   +            D+L +   +S   I+V +   +G 
Sbjct: 396 KGFVEDLVQIAGKPVLIECWDQRFFYFVLKFEFNFVDALGKASALSTVQIDVENAERYG- 454

Query: 293 KYSLPMSATFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAP 346
                   T+  A+G+     +   S      R + A++E ++     G   + P  ++P
Sbjct: 455 -------ITYIDANGEKKRPIILHCSPSGAIERCIYALLEKAYLEKEGGFMPMLPLWLSP 507

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ ++ +    +   +  + I   L+  G  V  DD  E +  +   A     P   +V
Sbjct: 508 TQLRILPVA---ERHLEYIDSILPALN--GIRVDVDDREETVSKKIRDAGREWIPYVAVV 562

Query: 407 GSKFVSDSKVEIKHRL-----TGIREDMSLEEVINYASHRFSNNRPV 448
           G K V +  + +  R           +MS+  +           + +
Sbjct: 563 GDKEVENKTLSVTIRGESSKKKKKVVEMSVSALRKRIEEDVKAKKNI 609


>gi|309808028|ref|ZP_07701947.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308168711|gb|EFO70810.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 275

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 109/299 (36%), Gaps = 31/299 (10%)

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F +  +  +  + K+    + ++    +     R           
Sbjct: 3   GLQRVREMTLNDGHTF-VELDQVQSEFAKILKLIMEVYRDFDITDYYFRLSYR------- 54

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D   T  + + D M            D + L  +        A      + + 
Sbjct: 55  -------DPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEA--EGEAAFYGPKLDIQT 105

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-GSYGIGAMRVVA 326
             +L  ++ +S   ++    F    +++L    ++ G DG++H   M     +G M    
Sbjct: 106 KTALGNDETMSTIQLD----FMLPERFNL----SYVGKDGEEHRPVMVHRGIVGTMERFI 157

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A +   + G    W   +AP ++ +I +   +    +  + +  +L K+G     D   E
Sbjct: 158 AYLTEIYKGAFPTW---LAPLQVKIIPVN--NDAHGEYAQNVKDQLMKLGFRAEVDFRNE 212

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++G +   A     P  +++G   +  + V ++   +  +E  +L E ++  S   ++ 
Sbjct: 213 KLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKALSEFVSELSADVASY 271


>gi|219128900|ref|XP_002184639.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403748|gb|EEC43698.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 479

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 119/410 (29%), Gaps = 62/410 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   K  + +      +    G      P   S D L  E    + +  E+  
Sbjct: 8   SGCYILRPWSYKMWELIQVWFNAKIEDMGVENAYFPLFVSQDRLEKEKDHVEGFAPEVAW 67

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +    + +   PT E +M   +   IKS+R+LP    Q     R E +     +R
Sbjct: 68  VTRSGEGDLARPIAVRPTSETIMYPAYSDWIKSHRDLPLKLNQWSNVVRWEFKYPTPFLR 127

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++   T E +  +  +    Y  ++    L ++P+                
Sbjct: 128 TREFLWQEGHTAHATFEDADATVMEALELYRGVYED--LLAVPV---------------- 169

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V     E + F                   I    S                NEK    +
Sbjct: 170 VPGYKTEKEKFAGGFRTTTVEAYIAGSGRAIQGATSHNLGQNFGKMFEISFQNEKGESQI 229

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P               +   T+    M        G     ++    +  +         
Sbjct: 230 PWQ-----------TSWGLTTRTIGVMVMVHGDDTGLVLPPRVAPLQVVIV--------- 269

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGS 390
                  I    + P +                C  I A L K G    +DD      G 
Sbjct: 270 ------PIISKKLTPEQ------------ADPYCLSILADLKKAGLRAKYDDRSAYNPGW 311

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           ++   +  G P+++ VG + +      +  R    +ED  +E + +   +
Sbjct: 312 KYNHWEQKGVPVRIEVGPRDIEQKSARVVVRHNSDKEDHPVEGLGSLLRN 361


>gi|46200191|ref|YP_005858.1| prolyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|81830546|sp|Q72GF9|SYP_THET2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46197819|gb|AAS82231.1| prolyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 477

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 5/170 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D 
Sbjct: 218 MKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDD 276

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           +G++ P  +AP ++ ++ I   +  +   +A + +   L   G  V  DD      G +F
Sbjct: 277 RGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALQAKGLRVHLDDRDQHTPGYKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +L G P +V +G K +   +  +  RL G +E + L  +      + 
Sbjct: 337 HEWELKGVPFRVELGPKDLEQGQAVLASRLGG-KETLPLAALPEALPGKL 385



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 16/186 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     E  + AE+A +  +  T ++           P G    +N+  ++     
Sbjct: 10  QSQDFSEWYLEVIQKAELADYGPVRGTIVVR----------PYGYAIWENIQQVLDRMFK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P       L  E+   + +  E+  +     +  ++ +   PT E V+  +
Sbjct: 60  ETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYM 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    +M
Sbjct: 120 WSKWIRSWRDLPQLLNQWGNVVRWEMRTR-PFLRTSEFLWQEGHTAHATREEAEEEVRRM 178

Query: 178 FVSYLR 183
              Y R
Sbjct: 179 LSIYAR 184


>gi|323337977|gb|EGA79216.1| YER087W-like protein [Saccharomyces cerevisiae Vin13]
 gi|323355284|gb|EGA87109.1| YER087W-like protein [Saccharomyces cerevisiae VL3]
          Length = 509

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 115/215 (53%), Gaps = 5/215 (2%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D      +  + +   
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDG 183

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             S               H+  +    P++++++ 
Sbjct: 184 QYSGDVDCKYALT---KDHSTLICFYYPKDRQLNW 215



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 7/166 (4%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVA 326
                E +    + IEVGHIF  G KYS P++  F   + K+     MG YGIG  R+V 
Sbjct: 298 CGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVG 357

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGC-DVFWD 382
           A+ E   D  G  WP  +AP+K+S+    N   + Q  +D   K+    +     +   D
Sbjct: 358 AIAELGRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQNLQNDILD 417

Query: 383 DMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
              E+  IG++  ++  +G PL VIVGSK   + ++EI+    G +
Sbjct: 418 QFNEKLGIGARIKLSHAMGIPLCVIVGSKSWPNVEIEIRGIRWGEK 463


>gi|323305259|gb|EGA59006.1| YER087W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 509

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 115/215 (53%), Gaps = 5/215 (2%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D      +  + +   
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDG 183

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             S               H+  +    P++++++ 
Sbjct: 184 QYSGDVDCKYALT---KDHSTLICFYYPKDRQLNW 215



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 7/166 (4%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVA 326
                E +    + IEVGHIF  G KYS P++  F   + K+     MG YGIG  R+V 
Sbjct: 298 CGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVG 357

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDACEKIYARLSKVGC-DVFWD 382
           A+ E   D  G  WP  +AP+K+S+    N   + Q  +D   K+    +     +   D
Sbjct: 358 AIAELGRDSNGFRWPAIMAPYKVSICTGPNNPENSQRLQDVKSKLLNDPTMQNLQNDILD 417

Query: 383 DMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
              E+  IG++  ++  +G PL VIVGSK   + ++EI+    G +
Sbjct: 418 QFNEKLGIGARIKLSHAMGIPLCVIVGSKSWPNVEIEIRGIRWGEK 463


>gi|304313817|ref|YP_003848964.1| threonyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587276|gb|ADL57651.1| threonyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 605

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 142/428 (33%), Gaps = 50/428 (11%)

Query: 24  KLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           +LM   G+         G   W P G+   D +   +       GA+ +  P +   +  
Sbjct: 197 RLMREKGLADYEPSADVGHLRWYPRGRLIRDLLADYVYMLVTSEGAMPVETPIMYDLEDE 256

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KF 139
                 + +G+   R+   N K ++           I      +++NLP + Y++    F
Sbjct: 257 AIRVHAEKFGERQYRMK--NKKELMLRYACCFGAFRILSDSFLTWKNLPASIYELSTYSF 314

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E +    G+ R R F M D ++     E +   +       ++    L +    +   
Sbjct: 315 RLEKKGEVVGLKRLRGFTMPDLHTVCADLEQALTEFAGQVEMCMKTGEDLQVNYEVIFRA 374

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +     + S     +AD         K  +   +PS                        
Sbjct: 375 TREFYEEYSDWVHSVADR------IGKPILLELLPSRKH--------------------Y 408

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GS 316
                +    D L          I+V     FG         T+  +D ++    +   S
Sbjct: 409 WIAKMDFAAIDYLGRPIENPTVQIDVESGERFG--------ITYVNSDEEEVNPIILHCS 460

Query: 317 YGIGAMRVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                 RV+ +++E +    D K  + P  ++P ++ ++ I    +   +  E + + ++
Sbjct: 461 PTGSIERVICSLLEKTAIEMDEKPPMLPVWLSPTQVRVLPIA---ERHLEFAESLVSEMT 517

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                   DD  E +G +   A     P  V+VG   +   K+ +  R TG +  M L+E
Sbjct: 518 ANDVRADLDDRAETLGKKIRNAAQDWVPYVVVVGDSELE-GKLTVNIRSTGEKVQMDLQE 576

Query: 434 VINYASHR 441
           +I      
Sbjct: 577 LIELVRSE 584


>gi|307717742|ref|YP_003873274.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306531467|gb|ADN01001.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 477

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF+   G   YV   S+G+ + R++ AVI +  D
Sbjct: 215 MMQDKKALQAGTSHFLGQNFAKAFDVTFQTQAGTLDYVWATSWGV-STRLIGAVIMAHSD 273

Query: 335 GKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
            +G++ P  +AP +  +I I          D  ++++ RL++ G  V  D D     G +
Sbjct: 274 DRGLVLPPRIAPTQAVIIPIYTKKTVDQVADYAKRVFGRLAEAGLSVEMDLDDQNSPGWK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           FA  +L G P++V VG + +   K  +  R TG +  +S+  +           +  L
Sbjct: 334 FAEWELRGVPIRVEVGPRDMEQEKAVLVRRDTGEKRAVSVSRLPEEIPVLLEEIQKTL 391



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 6/153 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG     P G    + + + +      TG      P L        E+   + +  E+  
Sbjct: 32  KGCMVIRPRGYAIWEKIQSQLDRMFKETGHQNAYFPLLIPESFLHKEAEHVEGFSPELAV 91

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ ++  PT E ++  +++  I+SYR+LP    Q     R E R R   +R
Sbjct: 92  VTHGGGEALEEPLVVRPTSETIIWSMYKKWIQSYRDLPLLINQWANVVRWEKRTRL-FLR 150

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + EFL ++ ++   T E ++    +M   Y   
Sbjct: 151 TTEFLWQEGHTAHATREEAEEEALRMLHVYREF 183


>gi|255527265|ref|ZP_05394146.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255509050|gb|EET85409.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 556

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLP 297
           +D       V           D       D  P           + +G I    T YS  
Sbjct: 350 NDTGYHYECVNYERDFTGTVGDFKKITEKDKCPVCGNSINIENAMGLGQIMNLKTTYSEN 409

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+A F    GK   + + +  I   R++A ++E +HD  GI+WP SVAP+++ +I     
Sbjct: 410 MNAVFLDKLGKSKPMSIINASINIDRLLALIVEQNHDKNGIVWPKSVAPYEVIVIAAVFK 469

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++      E IY +L  +G DV  DD  E+ G +F  ADL+G P+++ VG + +SD KVE
Sbjct: 470 NEEQMKTAENIYNKLKSLGIDVLLDDRDERAGVKFKDADLIGAPIRITVGKR-ISDGKVE 528

Query: 418 IKHRLT 423
            K R  
Sbjct: 529 FKLRNN 534



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 10/227 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  L  L+E P + E+ S+KLM+R G+I + + GIY+++P G+K + NVN +I+ E
Sbjct: 1   MKLSKMILGTLREAPGETELESYKLMVRAGIIRKVASGIYNFMPTGKKVIGNVNNLIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ V      +L  +    +S   +     D+++K    G   +E   +I ++
Sbjct: 61  MEKIDSQEIEVSQFVPFELLNQCNNKESSLTDTFETVDKSEKKFYVGADFKEPYIEIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP + Y IQ + +DE +P+FG+++S+EF     Y F      S    N +   
Sbjct: 121 EIKSYKQLPVSIYSIQKQIKDEPKPKFGIIKSKEFNELQCYVFHDDLTESSQYINSLCEV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  I+H+  + SI             S  F +    GE  V C +  
Sbjct: 181 FNSIYHKCRIDSIKTN----------SLRFFIKHPLGEEHVVCCESC 217


>gi|145251301|ref|XP_001397164.1| prolyl-tRNA synthetase YHR020W [Aspergillus niger CBS 513.88]
 gi|134082695|emb|CAK42588.1| unnamed protein product [Aspergillus niger]
          Length = 604

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/409 (17%), Positives = 130/409 (31%), Gaps = 55/409 (13%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G +   P      + +         + G    S P   S D L 
Sbjct: 103 QQVLTKGDMLDYYDVSGCFILKPASYFIWEEIQQWFNSYIKKMGVKNCSFPLFVSEDVLQ 162

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 163 REKDHIEGFAAEVAWVTHAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 222

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT EG+      +   Y RI+    L ++P+ 
Sbjct: 223 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTKEGAHEEVMTILDLYARIYEE--LLAVPV- 279

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                + G  + +         T V          I    +                 P 
Sbjct: 280 -----VKGQKTEKEKFAGGLYTTTVEGYIPATGRGIQGGTSHGLGQNFSKMFGITVEDPT 334

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A + D            +  +S R +                        G    +   +
Sbjct: 335 AKSDDKEKAAPLHVWQNSWGLSTRTL------------------------GVMVMIHSDN 370

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSK 374
            G+     VA       D + II P       + +      ++     D  +++ + L +
Sbjct: 371 RGLVLPPRVA-------DTQTIIVP-------VGITAKTTDEERKKLYDEVDRLVSTLRE 416

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            G     D   G   G +F   +L G PL++  G   ++   V    R 
Sbjct: 417 AGVRAESDLREGYSPGWKFNEWELRGVPLRLEFGPGELAGGFVTAARRD 465


>gi|325120098|emb|CBZ55652.1| putative prolyl-tRNA synthetase [Neospora caninum Liverpool]
          Length = 656

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 5/174 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGI+       GT ++      F+  +G    V   S+G    R +  +I +  D KGI+
Sbjct: 378 RGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGCT-TRSLGVMIMTHGDDKGIV 436

Query: 340 WPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  VA  ++ +I I   D+   +    C ++ A L K    V  DD      G ++   
Sbjct: 437 LPPRVASVQVIIIPILFKDENTAEIVAKCRELKALLEKADIRVRIDDRPNYTPGWKYNHW 496

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ G PL++ +G K ++     +  R T     +  +E++          +  L
Sbjct: 497 EVKGVPLRLELGPKDLAKGSARVVRRDTNEAYQVQWDELVPKLQELMDGIQKNL 550


>gi|157878081|pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878082|pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878083|pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878084|pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
          Length = 466

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 5/170 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D 
Sbjct: 205 MKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDD 263

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           +G++ P  +AP ++ ++ I   +  +   +A + +   L   G  V  DD      G +F
Sbjct: 264 RGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKF 323

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +L G P +V +G K +   +  +  RL G +E + L  +      + 
Sbjct: 324 HEWELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPGKL 372



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 23/185 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     E  + AE+A +  +  T ++           P G    +N+  ++     
Sbjct: 6   QSQDFSEWYLEVIQKAELADYGPVRGTIVVR----------PYGYAIWENIQQVLDRMFK 55

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
            TG      P                +  E+  +     +  ++ +   PT E V+  ++
Sbjct: 56  ETGHQNAYFPLFIPMSFL--------FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 107

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              I+S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    +M 
Sbjct: 108 SKWIRSWRDLPQLLNQWGNVVRWEMRTR-PFLRTSEFLWQEGHTAHATREEAEEEVRRML 166

Query: 179 VSYLR 183
             Y R
Sbjct: 167 SIYAR 171


>gi|296187244|ref|ZP_06855640.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048115|gb|EFG87553.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 556

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLP 297
           +D       V           D       D  P           + +G I    T YS  
Sbjct: 350 NDTGYHYECVNYERDFTGTVGDFKKITEKDKCPVCGNSINIENAMGLGQIMNLKTTYSEN 409

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+A F    GK   + + +  I   R++A ++E +HD  GI+WP SVAP+++ +I     
Sbjct: 410 MNAVFLDKLGKSKPMSIINASINIDRLLALIVEQNHDKNGIVWPKSVAPYEVIVIAAVFK 469

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++      E IY +L  +G DV  DD  E+ G +F  ADL+G P+++ VG + +SD KVE
Sbjct: 470 NEEQMKTAENIYNKLKSLGIDVLLDDRDERAGVKFKDADLIGAPIRITVGKR-ISDGKVE 528

Query: 418 IKHRLT 423
            K R  
Sbjct: 529 FKLRNN 534



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  L  L+E P + E+ S+KLM+R G+I + + GIY+++P  +K + NVN +I+ E
Sbjct: 1   MKLSKMILGTLREAPGETELESYKLMVRAGIIRKVASGIYNFMPTRKKVIGNVNNLIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ V      +L  +    +S   +     D+++K    G   +E   +I ++
Sbjct: 61  MEKIDSQEIEVSQFVPFELLNQCNNKESSLTDTFETVDKSEKKFYVGADFKEPYIEIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP + Y IQ + +DE +P+FG+++S+EF     Y F      S    N +   
Sbjct: 121 EIKSYKQLPVSIYSIQKQIKDEPKPKFGIIKSKEFNELQCYVFHDDLTESSQYINSLCEV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  I+H+  + SI             S  F +    GE  V C +  
Sbjct: 181 FNSIYHKCRIDSIKTN----------SLRFFIKHPLGEEHVVCCESC 217


>gi|194017643|ref|ZP_03056254.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010915|gb|EDW20486.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 477

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 83/171 (48%), Gaps = 2/171 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++     +FG  ++      F   +GK  +VQ  S+G    R++ A+I    D 
Sbjct: 221 MHDGKALQTATSHFFGNGFAKAFGIEFLNREGKLEHVQQTSWGFT-TRIIGAMIMVHGDD 279

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +G++ P ++AP ++ ++ I +H +   D   ++  RL+++      D   +Q G +F   
Sbjct: 280 RGLVLPPNIAPTQVRIVPIASHKEGVLDHAYELKERLTRI-ARADIDASDKQPGWKFNEC 338

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G PL+V VG K +   +V +  R TG ++ ++L+ +    +    + +
Sbjct: 339 EMQGIPLRVEVGPKDIEKGQVMLARRDTGEKQAVTLDALEQTITSTLEDIQ 389



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G K  +N+   +  +   TG   + +P      L   E    + +  E+  +
Sbjct: 38  GSMIIQPYGFKIWENIRDELDRQIKETGHENVYMPLFIPESLLQQEKDHIEGFAPEVAWV 97

Query: 97  ADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +    + +   PT E +  + +++ I SYR+LP  + Q     R E +     +R+
Sbjct: 98  THGGESELQERLCVRPTSEVLFAEHYKNIIHSYRDLPKLYNQWANVVRWE-KTTRPFLRT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
            EFL ++ ++   T + +     +M   Y  +   L
Sbjct: 157 LEFLWQEGHTCHETEQEAIEETERMLHIYASLCEEL 192


>gi|226355442|ref|YP_002785182.1| prolyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|226317432|gb|ACO45428.1| putative Proline--tRNA ligase (prolyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 499

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 4/171 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   Y G  +S      F+  + K+ Y    S+ I + R++ A+I +  D
Sbjct: 232 MMRDGKALQSGTSHYLGQNFSRAFDVKFQTREQKEEYAHTTSWAI-SSRIIGAIIMTHGD 290

Query: 335 GKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQ 391
             G+I P  +AP ++ +I +   D         E++   L  +G  V  D       G +
Sbjct: 291 DFGLIMPPRIAPIQVVVIPVGRKDNFDAMVQEAEQLAGELRALGLRVKVDKRDGVTNGFK 350

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +   +L G P+++ +G + +    V +K R +  +E +   E ++  + R 
Sbjct: 351 YNDWELKGVPVRIELGPRDLEQGVVVVKGRNSEEKETLERAEAVSGMTARL 401



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S  F     E  + A++A +  +    ++           P G    +N+   + +   
Sbjct: 25  QSVDFNDWYNEVVKKADLADNSPVAGAMVVR----------PYGSALWENIVRWLDDRFK 74

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDI 117
            TG   +  PTL     +  E+   + +  E+  +     +   +  +  PT E ++  +
Sbjct: 75  ATGHESLVFPTLIPMGFIMKEADHVEGFAPELFTVSKIGTEELAEPYVMRPTSETIIGHM 134

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   + SYR+LPF  YQ    FR ELR     +R+ EF   + ++       ++    +M
Sbjct: 135 WSGWLNSYRDLPFLHYQWGSVFRAELR-TKAFLRTSEFFWHEGHTAHADEPEARGEVRQM 193

Query: 178 FVSYLRIFHRL 188
              Y      +
Sbjct: 194 LDIYHEFCRDV 204


>gi|157690994|ref|YP_001485456.1| prolyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157679752|gb|ABV60896.1| proline--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 477

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 83/171 (48%), Gaps = 2/171 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++     +FG  ++      F   +GK  +VQ  S+G    R++ A+I    D 
Sbjct: 221 MHDGKALQTATSHFFGNGFAKAFGIEFLNREGKLEHVQQTSWGFT-TRIIGAMIMVHGDD 279

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +G++ P ++AP ++ ++ I +H +   D   ++  RL+++      D   +Q G +F   
Sbjct: 280 RGLVLPPNIAPTQVRIVPIASHKEGVLDHAYELKDRLTRI-ARADIDASDKQPGWKFNEC 338

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G PL+V VG K +   +V +  R TG ++ ++L+ +    +    + +
Sbjct: 339 EMQGIPLRVEVGPKDIEKGQVMLARRDTGEKQAVTLDALEQTITSTLEDIQ 389



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G K  +N+   +  +   TG   + +P      L   E    + +  E+  +
Sbjct: 38  GSMIIQPYGFKIWENIRDELDRQIKETGHENVYMPLFIPESLLQQEKDHIEGFAPEVAWV 97

Query: 97  ADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +    + +   PT E +  + +++ I SYR+LP  + Q     R E +     +R+
Sbjct: 98  THGGESELQERLCVRPTSEVLFAEHYKNIIHSYRDLPKLYNQWANVVRWE-KTTRPFLRT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
            EFL ++ ++   T + +     +M   Y  +   L
Sbjct: 157 LEFLWQEGHTCHETEQEAIEETERMLHIYASLCEEL 192


>gi|297620157|ref|YP_003708262.1| threonyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379134|gb|ADI37289.1| threonyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 150/442 (33%), Gaps = 62/442 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           ++ EI  ++     G           W P G+   D ++  + +   + GA+ +  P + 
Sbjct: 212 KEKEICDYEPSSDAGHFR--------WYPKGKLIRDLLSDYVYDLVVKYGAMPVETPVMY 263

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      D +G+   R    N K ++           + +      ++LP   Y++
Sbjct: 264 DLGNKAIKEHADKFGERQYRFRQSN-KDLMLRFAACFGQFMMKKDMYLLPKHLPLKLYEL 322

Query: 136 QL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E R    G+ R R F M D ++  +  E +K ++ + F   L+    L     
Sbjct: 323 STYSFRYEQRGELVGLKRLRAFTMPDMHTVCMDMEQAKQAFEEQFWMGLQTGDDLKTPYS 382

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   +     +  H+  +     E +    KD +   +P+    +   + +  +     
Sbjct: 383 IIFRFTQDFYDE--HKDWLYNIITEYRAKYEKDVVLEILPARKHYWIGKVDMAVV----- 435

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                          DS           I+V          +     T    D K + + 
Sbjct: 436 ---------------DSFGRPIENPTVQIDVES--------AKRFDITVNDGDKKINPII 472

Query: 314 MGSYGIGAM-RVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +     G++ RV+  ++E ++    +    + P  +AP ++ +I +    Q   +    +
Sbjct: 473 LHCSPTGSVERVLCGLLEGAYLNTLEEVPPMLPTWLAPIQVRVIPVSDKHQ---EYALSV 529

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +L   G    +DD  E IG +         +      V++G + +    + +  R   
Sbjct: 530 AEKLRANGIRADYDDREESIGKKIRNAGKDWSM----YVVVIGDEEMEKGNLNVTVRAKS 585

Query: 425 -----IREDMSLEEVINYASHR 441
                ++E M LEE+I+     
Sbjct: 586 STKKPVKEVMKLEELISTIKSE 607


>gi|82753710|ref|XP_727786.1| prolyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483805|gb|EAA19351.1| prolyl-tRNA synthetase-related [Plasmodium yoelii yoelii]
          Length = 583

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 154/463 (33%), Gaps = 115/463 (24%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F  I  +N +     + +L+ R   I + + G+Y+ LPLG + ++ +   I     +  +
Sbjct: 123 FNKIFNDNIKQNGDKASELLFRANYIKEIN-GLYNMLPLGMRVINKIKDFINNYLEKINS 181

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL-----------------ADRNDKAMIYGPT 109
             + +  LQ   LW  S R   Y +E L +                     D   I  PT
Sbjct: 182 HSVFLSILQPKRLWNISDRSKLYSEEFLYVYKQKQQKVDTDLGEIIKKKYEDDGNILSPT 241

Query: 110 HEEVMTDIFRSHIK---SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            EE+   +         + +N P   +Q   KFR+E R    + +S+EFLMKD YSF   
Sbjct: 242 CEEIALTLINEVYNLNATEKNFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGYSFHAN 301

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +     Y         I+                                         
Sbjct: 302 KKCMDEIYE--------IYKEC-------------------------------------- 315

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                       F+ +     I+++         + H  ++     + K       E  H
Sbjct: 316 --------YKNIFNKLGLTYRIIKKRKKDKMNALESHEYQILCRDGKFK-------EGAH 360

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           IF  G  YS  ++  +     +   + MGSYGIG  R++  +I++ +D  GI  P+ +AP
Sbjct: 361 IFKLGDYYSKKLNINYLNKKNEKKNIYMGSYGIGINRLLYFLIDNFYDENGIKLPNQIAP 420

Query: 347 FKISLINIKAHDQVCRDACEKIYARL---------------------------------S 373
           F I LI      +   +   KI   L                                  
Sbjct: 421 FSIYLIQTNQKSKYSSEKVNKIVNELRKEIINDNNTTLYNSLNSNDIEYILTIWLYTILK 480

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +   D ++D+    +  +    DL+G   +VI+  K     K+
Sbjct: 481 ENDIDTYYDNTDLHLSRKLKNCDLIGASNRVIINLKSDEKKKI 523


>gi|322697644|gb|EFY89422.1| prolyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 506

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 2/173 (1%)

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
               GA  +S+ T+ S +LW  SGR D    E  + RL DR    ++  PTHEE +T + 
Sbjct: 1   MESIGASRLSLSTITSEELWRRSGRLDRVSSEAQLFRLTDRKQVPIMLSPTHEEEITTLV 60

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S +KS+++LP   YQ   K+RDE+RPR G++RSREF+MKD Y+FD + E +  +Y  + 
Sbjct: 61  ASALKSFKDLPLRLYQTTRKYRDEMRPRHGLLRSREFIMKDLYTFDTSFESAIDTYKCVS 120

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +Y   F  + +  +   A SG +GGD SHE+ +    GE +V          
Sbjct: 121 RAYRAFFAEMRIPILVAEASSGDMGGDYSHEYHLAHPIGEDRVISCDSCEYTA 173



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 5/184 (2%)

Query: 266 KLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGA 321
              DS P  +       R +E+GH FY G++YS P   +    + K    V+MG YGIG 
Sbjct: 322 MDGDSCPRCEPGSLRIHRALELGHTFYLGSRYSKPFELSVTFPNSKAPVPVEMGCYGIGV 381

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVF 380
            R+  AV E   D +G+ WP ++APF+I +I     +    +  +K+ +  S   G D  
Sbjct: 382 SRIFGAVAEHKADERGLNWPRAIAPFEIVVIPTSGVNSQTLEFHDKLTSWSSSGPGFDAV 441

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E  G +   AD+ G+P+ +++G  +      E++ R    +E++++E++  + + 
Sbjct: 442 LDDRKETFGWKMQDADMTGYPVTIVLGKAWRERGVCEVQCRSLSSKENIAVEDLPVHLNA 501

Query: 441 RFSN 444
             S 
Sbjct: 502 LLSQ 505


>gi|294933724|ref|XP_002780831.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239890922|gb|EER12626.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 296

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 19/184 (10%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R ++     + GT ++      F+  +G+  + +  S+G    R +  +I    D K
Sbjct: 47  CNGRAVQGATSHFLGTHFAKMFGIEFEDRNGEKKFAEQTSWGFT-TRSIGVMIMEHGDDK 105

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR-----------DACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  ++ ++ I       +           + C+ +Y  L+  G  V  DD  
Sbjct: 106 GLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKTMIGEKCKSLYEDLNANGVRVVLDDRD 165

Query: 386 -EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG------IREDMSLEEVINYA 438
            +  G +F   +L G PL++ VG+K +    V    R TG          + ++E +   
Sbjct: 166 DKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNTGKKSQEAEHSSVKVKEALESI 225

Query: 439 SHRF 442
               
Sbjct: 226 QSEL 229


>gi|66809829|ref|XP_638638.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60467254|gb|EAL65287.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 548

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 5/174 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGI+       G  +S   +  F+   G        S+G+   R +  ++    D KG++
Sbjct: 266 RGIQAATSHALGQNFSKMFNIEFENDKGTKSLAWQNSWGLT-TRTIGVMVMVHGDDKGLV 324

Query: 340 WPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  ++P +  +I +   D          ++I  +L   G  V  D+      G ++   
Sbjct: 325 LPPRISPIQAVVIPLHFKDSDTTAVDSKAKEIADQLKAAGIRVNLDNRPNYNPGHKYNHW 384

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +L G P+++ +G K V+   V    R T  +  + +  ++        N +  L
Sbjct: 385 ELKGVPIRIEIGPKDVASGTVICCRRDTAEKSKVEISNIVTGVKELLDNIQSNL 438



 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + R+ MI  +   G Y   P      + + A    E  +        P L S   L  E 
Sbjct: 64  ITRSEMIDYYDISGCYILRPWAYSIWEQIQAFFDAEIKKLDVQNAYFPLLVSEKALTTEK 123

Query: 84  GRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    D      +   PT E +M   + + I+S+R+LP    Q     
Sbjct: 124 DHIEGFAPEVAWVTKSGDSQLADPVAIRPTSETIMYPAYANWIRSHRDLPLKLNQWVNVV 183

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           R E +     +RSREFL ++ ++     E +      +   Y R++  L
Sbjct: 184 RWEFKRPVPFLRSREFLWQEGHTAFANKEEADEEVFTILDLYRRVYEEL 232


>gi|307069651|ref|YP_003878128.1| putative prolyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
 gi|306482911|gb|ADM89782.1| putative prolyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
          Length = 553

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 125/213 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K+F+  L++   +    + K++ + GMI + S GIY+++P+    L  + +II  E
Sbjct: 1   MLAKKFFIFTLKKILSNINNKTLKIINKIGMIKKISSGIYTYMPILLLILKKIKSIINYE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+ +P +Q +++W ++ R+     E+L+  +R  K  +  PT EE++T I + 
Sbjct: 61  MKKNNITEILMPIIQPSNIWKKTKRWYKMKNELLKFKNRKKKYFVMQPTSEELITYIIKK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + +Y+ LP  FY IQ KFRDELR + G++R +EF+MKDAYSFD++ + S  +Y  M   
Sbjct: 121 ELLNYKQLPLIFYNIQNKFRDELRCKSGLIRLKEFIMKDAYSFDISFKNSIKNYKLMLNI 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           Y  IF+++ LK   ++  +  +   +SHEF ++
Sbjct: 181 YKNIFNKINLKFKILKTNNKNMEWIISHEFHII 213



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N+I +         +    +   D    N     + IE+ HIF  G  YS  +++ +   
Sbjct: 354 NNIFKNKIKLNIIHNINKKKNKIDLNNFNILKIKKSIEIAHIFLLGKFYSRLINSKYINY 413

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           + K  +  MGSYGIG  R++  +IE + D  GI WP+++ PF + +  IK ++   +   
Sbjct: 414 NNKKKFFFMGSYGIGISRLLQIIIEKNIDKIGIKWPNNLIPFNLVICFIKNNN-YIKKIS 472

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             IY +L  +  ++  D+    IG      +L+G P  +IVG  F+  + +  K R    
Sbjct: 473 YFIYYKLLLLNINLIIDNRNINIGYMLNDWELIGIPNYIIVG-NFIKKNIISYKVRKKKN 531

Query: 426 R-EDMSLEEVINYASHRFS 443
             +++++ ++  +  ++ +
Sbjct: 532 IYKNININKIFKFIFNKIN 550


>gi|90410627|ref|ZP_01218643.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90328868|gb|EAS45152.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 195

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 72/175 (41%), Gaps = 12/175 (6%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIES 331
                R  + G +      ++LP  + AT+ G D + H  V +    +G++     ++  
Sbjct: 24  HDCLDRAWQCGTV---QLDFALPERLGATYVGEDNERHTPVMIHRAILGSLERFIGILIE 80

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            + G    W   +AP +  ++NI        +  ++I  +L K G  V  D   E+IG +
Sbjct: 81  EYAGFFPTW---LAPQQAVVMNIT---DSQSEYAQEIVKKLQKCGIRVNADLRNEKIGFK 134

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                L   P  ++ G K V   ++ ++ R       + ++E++ +     S+ +
Sbjct: 135 IREHTLKRVPYMLVCGDKEVEAGEIAVRTRKGKDLGKLKIDELVAFLQQEISSRK 189


>gi|55980084|ref|YP_143381.1| prolyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|81821927|sp|Q5SM28|SYP_THET8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14719699|pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 gi|14719700|pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 gi|14719702|pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 gi|14719703|pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 gi|14719710|pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719711|pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719712|pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719713|pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14423353|gb|AAK62359.1|AF384553_1 prolyl-tRNA synthetase [Thermus thermophilus]
 gi|55771497|dbj|BAD69938.1| prolyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 477

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 5/177 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D 
Sbjct: 218 MKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDD 276

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           +G++ P  +AP ++ ++ I   +  +   +A + +   L   G  V  DD      G +F
Sbjct: 277 RGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +L G P +V +G K +   +  +  RL G +E + L  +      +       L
Sbjct: 337 HEWELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPGKLDAFHEEL 392



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 16/186 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     E  + AE+A +  +  T ++           P G    +N+  ++     
Sbjct: 10  QSQDFSEWYLEVIQKAELADYGPVRGTIVVR----------PYGYAIWENIQQVLDRMFK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P       L  E+   + +  E+  +     +  ++ +   PT E V+  +
Sbjct: 60  ETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYM 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    +M
Sbjct: 120 WSKWIRSWRDLPQLLNQWGNVVRWEMRTR-PFLRTSEFLWQEGHTAHATREEAEEEVRRM 178

Query: 178 FVSYLR 183
              Y R
Sbjct: 179 LSIYAR 184


>gi|310641589|ref|YP_003946347.1| prolyl-tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309246539|gb|ADO56106.1| Prolyl-tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 482

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 75/175 (42%), Gaps = 4/175 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R ++ G   Y GT +++     +   +    +    S+G  + R++ A+I    D
Sbjct: 221 MMRDGRAVQAGTSHYMGTNFAVAFDIKYLSRENNLEFAHTTSWG-TSTRLIGALIMVHGD 279

Query: 335 GKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            +G+  P  VAP ++ ++ I             ++++A L + G  V  DD      G +
Sbjct: 280 DRGLALPPKVAPTQVIMVPIGPPKKRDAVIARADELFAELKQAGVRVKMDDRSDVSPGWK 339

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F   ++ G P+++ +G + + +    +  R++G ++ +  + ++       +  +
Sbjct: 340 FNEYEMRGVPVRLEIGPRDMENGVCVLVSRISGEKKIVQQDNLLEEVHAMLAQVQ 394



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     +  + AE+  +  +           G   + P G +  +++   +     
Sbjct: 14  QSEDFSRWYIDVIKKAELMDYSPVR----------GCIVFRPDGFEIWEHIKEAMDVRFR 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E    + +  E+  + +    + ++ +   PT E ++  +
Sbjct: 64  ETGHRNAYFPMFIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLAIRPTSETMIGHM 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E R     +R+ EFL ++ ++   T E ++    KM
Sbjct: 124 YSKWIQSYRDLPVLINQWANVVRWEKR-TLPFLRTSEFLWQEGHTAHETEEEAREETMKM 182

Query: 178 FVSYLRIFHRL 188
              Y  +   +
Sbjct: 183 LEVYREVIEEV 193


>gi|298674446|ref|YP_003726196.1| threonyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298287434|gb|ADI73400.1| threonyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 637

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 157/439 (35%), Gaps = 60/439 (13%)

Query: 24  KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R G+         G   + P G+     +   + +E  R+GA+E+  P +   +  
Sbjct: 220 ELMKRLGIADYEQGSDSGNLRYYPRGRFIKSLLENYVLDEAIRSGAMEVETPIMYDMNHP 279

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +         + + + +            +      SY+NLP    ++  
Sbjct: 280 TLKKYLDRFPARQ----YSIESDKRRLFLRFAACFGQFLMSHDMTISYKNLPLKMVEMTR 335

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++F    + S   ++  +   +     +G+     
Sbjct: 336 YSFRKEQRGELVGMKRLRSFTMPDMHTFCEDMDQSISEFDDQYKMCINTLDNIGVDV--- 392

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                              D  E  +  ++DF +       T+    ++   +VE W   
Sbjct: 393 -------------------DDYEVAIRFTRDFYENN-KDFITEMAKTVNKPVLVEMWDTR 432

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM- 314
           +            D+L +   +S   I+V +        +     ++   +G+     M 
Sbjct: 433 FFYFVLKFEFNFIDALGKASALSTVQIDVEN--------AETYDISYIDRNGESKRPTML 484

Query: 315 -GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             S      R + A++E +     +G+  + P  ++P ++ +I +  H     D  EKIY
Sbjct: 485 HCSPSGAIERCIYALLEKNAMKIDNGEVPMLPVWLSPTQVRIIPVHEH---HFDFAEKIY 541

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----- 424
            +L+   C V  DD  + +G +   A     P  V++G + +   K+ +  R        
Sbjct: 542 EQLN---CRVDIDDREDTVGKKIREAGREWIPYVVVIGDREIESGKLNVTIRSESLPKKP 598

Query: 425 IREDMSLEEVINYASHRFS 443
              +M++EE+ N       
Sbjct: 599 KSSEMTVEELNNRVLSEIQ 617


>gi|224368341|ref|YP_002602504.1| prolyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|223691057|gb|ACN14340.1| ProS [Desulfobacterium autotrophicum HRM2]
          Length = 504

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 132/444 (29%), Gaps = 90/444 (20%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADL 79
           ++ +++   + + S   G     P G    +N+ + +      TG      P     + L
Sbjct: 21  YQEVVKASEMAEKSPVRGCMVIKPWGYALWENIVSTMDGMFKDTGIKNAYFPLFIPLSYL 80

Query: 80  WVESGRYDSYGKEMLRLAD------RND---------KAMIYGPTHEEVMTDIFRSHIKS 124
             E+   + + KE   +         +          + +I  PT E ++ +       S
Sbjct: 81  EKEAEHVEGFAKECAVVTHHRLEAGEDGKLVPAGKLTEPLIVRPTSETIIGESMSRWTSS 140

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    Q     R E       MR+R         F  T E                
Sbjct: 141 YRDLPILLNQWANVVRWE-------MRTR--------IFLRTSEFLWQE----------- 174

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                        A   E +       M         D      
Sbjct: 175 --------------------------GHTAHATEAEARERTMMM--------LDVYTRFV 200

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +           S+     +     E      + ++ G   + G  ++      F+ 
Sbjct: 201 EEYLAMPVVRGRKTASERFPGAVDTVCIEAMMQDKKALQAGTSHFLGQNFARSSDIRFQN 260

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VC 361
           AD K+ +    S+G  + R++  +I +  D  G+I P  VAP  + L+ I   ++     
Sbjct: 261 ADKKEEFAWTTSWG-TSTRMIGGMIMTHADDDGVIMPPRVAPAHVVLLPIARKEEDQRKV 319

Query: 362 RDACEKIYARLS-----KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +    +   L+          V  DD     G++       G PL+  +G + + +  V
Sbjct: 320 MEYTRSLADALAVRTYHGSRIRVEIDDRD-TGGARAWDWIKKGIPLRAEIGPRDMENDCV 378

Query: 417 EIKHRLT--GIREDMSLEEVINYA 438
            +  R    G +  +  E+ IN  
Sbjct: 379 FLGRRDEAPGKKVSLPREDFINTI 402


>gi|213403478|ref|XP_002172511.1| cytoplasmic proline-tRNA ligase Prs1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000558|gb|EEB06218.1| cytoplasmic proline-tRNA ligase Prs1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 711

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 128/441 (29%), Gaps = 79/441 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ ++ MI  +   G Y   P      + +      E  + G      P  + S  L 
Sbjct: 216 QQVLTKSDMIEYYDISGCYILKPWSYFIWEVIQKWFDTEIKKIGVKNGYFPLFVSSRVLE 275

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +               +  
Sbjct: 276 KEKDHVEGFAPEVAWVTRAGSSDLEEPIAIRPTSETVMYPYYA--------------KWI 321

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              RD        +  R                                 R   K+    
Sbjct: 322 RSHRD--------LPLRLNQWNSVV-------------------------RWEFKNPQPF 348

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  +  + +V        + +   +  + D+++L  +    +   
Sbjct: 349 LRTREFLWQEGHTAFLTKEEADKEV-------HYILDLYSRVYSDLLALPVVKGVKSENE 401

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-------D 309
                ++       +P     + RGI+       G  +S   +   +  D +        
Sbjct: 402 KFAGGLYTTTCEGYIPT----TGRGIQGATSHGLGQNFSKMFNIAVEDPDAELVNGERPK 457

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCR 362
            Y+   S+G+ + R +   +    D KG+  P +VA  +  ++          A      
Sbjct: 458 RYIWQNSWGL-STRTIGVAVMVHGDDKGLKLPPAVASIQAIVVPCGITNKTTDAQRAELE 516

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + C++I   L         D      G +FA  +L G PL++  G       +V    R 
Sbjct: 517 NKCKQIADSLVAGEVRAEVDLRSYTPGYKFAHWELKGVPLRIEYGPNDAKKEQVTAVRRD 576

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + L  + N      +
Sbjct: 577 TFEKIAIPLANLANGVQDVLA 597


>gi|289582184|ref|YP_003480650.1| prolyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531737|gb|ADD06088.1| prolyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 493

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/439 (13%), Positives = 129/439 (29%), Gaps = 78/439 (17%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E  + A +A +  M           G     P G    + +   +      TG   +  P
Sbjct: 24  EVVQKANLADYAPMG----------GFIVTKPRGYALWEAIQDALDGWFKETGVDNVYFP 73

Query: 73  TLQSADLWVESGRY-DSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
                          + +  E+  +     D  ++ +   PT E ++             
Sbjct: 74  MFIPESFLEREKDIVEGFDPEVAWVTHGGHDELEERLAVRPTSESIIAPFMAD------- 126

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
                       RD        +  R         ++ T                + F R
Sbjct: 127 -------WTRSHRD--------LPLRLNQWCSVVRWEATE--------------TKPFFR 157

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                              + EF+      E     + D   +       D  + +    
Sbjct: 158 -------------------TKEFMWQ----EGHTAHATDESAWEEVWTRLDQYEKVYEEV 194

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +            D        +  E      + ++       G  ++     +F   D 
Sbjct: 195 LAIPVLRGKKPEHDKFPGADTTTTVEALMPDGKSVQGATSHNLGQSFAEAFDISFVDEDE 254

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV--CRDAC 365
           ++      S+G+ + R + A+I +  D +G++ P ++AP +++++ I   +      +  
Sbjct: 255 EERTAYTTSWGL-SWRALGALIMTHSDDQGLVLPPTIAPTQVAIVPIWQEETKADVLEYS 313

Query: 366 EKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + I   L + G  V  DD  E+  G +F   +L G PL++ +G   V D +V + HR   
Sbjct: 314 QNIADELEEAGFSVELDDRDERNPGFKFNEHELNGVPLRLEIGPYEVEDEEVTLVHRPDN 373

Query: 425 IREDMSLEEVINYASHRFS 443
                  + +++       
Sbjct: 374 EEAVEDRDGIVDAVDDHLE 392


>gi|213022828|ref|ZP_03337275.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 167

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query: 280 RGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           R  + G +      +SLP  +SA++ G D +    V +    +G+M     ++     G 
Sbjct: 1   RAWQCGTV---QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGF 57

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              W   +AP ++ ++NI        +   ++  +L   G  V  D   E+IG +     
Sbjct: 58  FPTW---LAPVQVVVMNIT---DSQSEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHT 111

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           L   P  ++ G K V   KV ++ R       + + +VI        + 
Sbjct: 112 LRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDVIEKLQQEIRSR 160


>gi|116754480|ref|YP_843598.1| threonyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121694718|sp|A0B8D4|SYT_METTP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116665931|gb|ABK14958.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methanosaeta
           thermophila PT]
          Length = 619

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 156/463 (33%), Gaps = 61/463 (13%)

Query: 2   RRSKYFLPILQENPRDAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAII 57
           R  K+    ++++     I  H +LM R  ++        G   + P G+     + + +
Sbjct: 181 RLEKFVRYEIEKSRAVDRIPPHVELMRRLELVDYEPGSDPGNMRYYPKGRLVKSLLESYV 240

Query: 58  REEQNRTGAIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +     GA+E+  P +   D   L     R+ +         + + K +          
Sbjct: 241 TDRALEMGAMEVETPVMYDMDHPTLKKYLDRFPARQ----YAIEADKKHLFLRFAACFGQ 296

Query: 115 TDIFRSHIKSYRNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
             +      SYR+LP   +++    FR E R    G+ R R F M D ++F      +  
Sbjct: 297 FLMGHDMTFSYRSLPLRMFELTRYSFRREQRGELVGLRRLRAFTMPDMHTFCGDMSSAME 356

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            + K + + + +    GL                           E  +  +KDF +   
Sbjct: 357 EFRKQYEASISVLRDAGLDLKDY----------------------EVAIRFTKDFYENN- 393

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      DI+    ++E W   +            D+L +   +S   I+V +      
Sbjct: 394 KTFIEGLVDIVDKPVLIEMWDERFFYFVLKFEFNFVDALDKASALSTVQIDVENAER--- 450

Query: 293 KYSLPMSATFKGADGKDHYVQM--GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAP 346
                    +  A+G      +   S      R++ A++E       +G   + P  ++P
Sbjct: 451 -----YDIGYVDAEGNRQRPIILHCSPSGAIERLMYALLEKQAMIAANGGLPMLPTWLSP 505

Query: 347 FKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
            ++ +I +   H     +  E++          V  DD  E +G +   A     P   +
Sbjct: 506 TQVRIIPVAERHHARAMEVAEQL-------NFRVDVDDRDETVGKKIRDAGREWVPYVAV 558

Query: 406 VGSKFVSDS--KVEIKHRLT-GIREDMSLEEVINYASHRFSNN 445
           VG + +S     V ++   T   +  MS+EE+        +  
Sbjct: 559 VGDEELSTGLLTVTVRSESTSNQKIKMSVEELRARLQSETAGR 601


>gi|313127085|ref|YP_004037355.1| prolyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312293450|gb|ADQ67910.1| prolyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 488

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 4/172 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++       GT ++     T+   D +       S+G+ + R + A+I +  D 
Sbjct: 224 MPDGKSVQGATSHDLGTSFAEAFDLTYTDEDEESQVAHTTSWGL-SWRALGALIMTHSDD 282

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQF 392
           +G++ P +VAP ++ ++ I   D  +   +  E I   L   G  V  DD  E+  G +F
Sbjct: 283 QGLVLPHTVAPEQVVIVPIWQADTQEKVLEYAESISEELEDAGIRVELDDRDERNPGFKF 342

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +L G P++  +G   V D  V + HR  G  ++++ E++       F  
Sbjct: 343 NEWELKGVPVRFEIGPNEVDDDVVTVVHRPDGETKEVAREDIAETVREEFDE 394



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 5/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G     P      + V   +      TG      P       L  E    + +  E+  
Sbjct: 39  SGFIVTRPRAYALWERVQGFLDARFKDTGVQNAYFPLFIPESYLEREKDIVEGFDPEVAW 98

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  ++ +   PT E ++       ++S+R+LP    Q     R E        R
Sbjct: 99  VTQAGHDELEERLAVRPTSESIIAPYMSQWVRSHRDLPLRVNQWASVVRWEATETKPFFR 158

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           ++EFL ++ ++   T E +          Y  ++  L
Sbjct: 159 TKEFLWQEGHTAHATAEAAWDETMTRLDQYESVYEDL 195


>gi|207724051|ref|YP_002254449.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206589260|emb|CAQ36222.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 243

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 81/274 (29%), Gaps = 35/274 (12%)

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++   G +++ ++    P     + E    A+ G      +       +
Sbjct: 3   EAKDFNDLAFSVYEDFGFENVAVKLALRPDKRAGTDEIWDHAEEGLRTALRACGVEWEEL 62

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P E   +   +                               K    R  + G +     
Sbjct: 63  PGEGAFYGPKVEY---------------------------HIKDAIGRSWQCGTL-QLDL 94

Query: 293 KYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A +   D  +   V +    +G+      ++  +H G   +W   +AP ++ +
Sbjct: 95  VLPERLGAEYVAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLW---LAPEQVVV 151

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           ++I        +  + +   L K G     D   E+I  +     L   P  V+VG K  
Sbjct: 152 MSIA---DAHAEYAQTVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKER 208

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             ++V ++ R       M +   +    +  +N 
Sbjct: 209 DGNQVAVRARGNVDLGSMPISAFVERLQNDLANK 242


>gi|119719664|ref|YP_920159.1| threonyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|166225513|sp|A1RY76|SYT_THEPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119524784|gb|ABL78156.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermofilum
           pendens Hrk 5]
          Length = 608

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 123/367 (33%), Gaps = 48/367 (13%)

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
               +G  + +  + ++K +I           + +    SYR+LPF  +++   +R E  
Sbjct: 261 HAQLFGDRLYQ-MEVDEKKLILRYAACHQQFAMVKDWEISYRDLPFGAFEVADSYRLEQP 319

Query: 145 PRFGV-MRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               +  R R+F M D + F     E  + S+      Y  I  +LG   + +   +   
Sbjct: 320 GELLLCFRLRKFYMPDLHVFCKDLAEAMEVSFRIHSKIYEEI-RKLGRDYVSIYNLTRS- 377

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                                                 ++     ++             
Sbjct: 378 -------------------------FLEQHRDYLKRLVEMEGKPVLLHFVPEGKYYWVIN 412

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--G 320
               + D L   + +    I+VG+   FG         T+   +    Y  +    I   
Sbjct: 413 VEYNIIDELGRPREIGTFQIDVGNAERFG--------ITYVDENNTRRYPVIIHTAIIGS 464

Query: 321 AMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             R V AV++++      G+    P  ++P ++ +I    H        + I  +L + G
Sbjct: 465 LERYVFAVLDTAAKKARAGEVPSLPLWLSPVQVRVIP---HSSEYLKLADSIADKLEEQG 521

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  DD  E +  +   A++   P  V+VG +     K+ ++ R  G + +MSLEE++ 
Sbjct: 522 IRVDVDDREESLAKRIRDAEVKWIPYVVVVGKREAESGKLTVRVRGQG-QYEMSLEELVG 580

Query: 437 YASHRFS 443
                  
Sbjct: 581 RLVSELK 587


>gi|330791323|ref|XP_003283743.1| prolyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325086366|gb|EGC39757.1| prolyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 530

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 5/174 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGI+       G  +S   +  F+   G        S+G+   R +  +I    D KG++
Sbjct: 248 RGIQAATSHCLGQNFSKMFNIEFENDKGGKSLAWQNSWGLT-TRTIGVMIMLHGDDKGLV 306

Query: 340 WPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  +AP +  +I +   D          ++I   L   G  V  D+      G ++   
Sbjct: 307 LPPRIAPIQAVVIPLHFKDADTTAVDTKAKEIADSLKAAGIRVNLDNRPNYNPGHKYNHW 366

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +L G P+++ +G K V+   V    R T  +  + +  ++N         +  L
Sbjct: 367 ELKGVPIRIEIGPKDVASGSVICCRRDTAEKSKVEISNIVNGVKELLDTVQSNL 420



 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 6/169 (3%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + R+ MI  +   G Y   P      + + A    E  +        P L S   L  E 
Sbjct: 46  ITRSEMIDYYDISGCYILRPWAYSIWEQIQAFFDSEIKKLDVQNAYFPLLVSEKALTTEK 105

Query: 84  GRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +           +   PT E +M   + + I+S+R+LP    Q     
Sbjct: 106 DHIEGFAPEVAWVTKSGGSDLADPVAIRPTSETIMYPAYANWIRSHRDLPLKLNQWVNVV 165

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           R E +     +RSREFL ++ ++     E +      +   Y R++  L
Sbjct: 166 RWEFKRPVPFLRSREFLWQEGHTAFANKEEADQEVYTILDLYRRVYEEL 214


>gi|159479048|ref|XP_001697610.1| organellar class II aminoacyl tRNA synthetase [Chlamydomonas
           reinhardtii]
 gi|158274220|gb|EDP00004.1| organellar class II aminoacyl tRNA synthetase [Chlamydomonas
           reinhardtii]
          Length = 580

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 135/469 (28%), Gaps = 82/469 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L    +    AE+A +  +  T +I           P G    ++V  ++     
Sbjct: 92  FSKWYL----DVVAKAELADYGPVRGTMVIR----------PYGYSIWESVQGVLDARFK 137

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD--------------RNDKAMIYG 107
             G      P L        E+   + +  E+  +                         
Sbjct: 138 ELGVQNAYFPQLIPYSFITKEAEHVEGFAPELALVTKGGVCVGGGNTVRRRSVRSVRPCT 197

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
            T   V   +    ++SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 198 CTCVGVCCHVLWGWVQSYRDLPLLINQWCNVHRWEMRTR-PFVRTLEFLWQEGHTAHATA 256

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++     M   Y                         +H   +    G      S   
Sbjct: 257 EEAEAEARAMIDVYTHF---------------------ATHTAAMPVVPGRKSRIESFAG 295

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                           +         A Y+     H        P     S       H 
Sbjct: 296 GRRGRDGGGAIKSMWQTQTGSAPAPAAAYSPPYPSHYVHHLAPAPHLYTNS-------HP 348

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                     M                 S+G+ + R++  VI +  D KG+  P  +AP 
Sbjct: 349 ISLHL-----MHLCVFD---------QTSWGV-STRIIGGVIMTHGDDKGLRLPPRLAPI 393

Query: 348 KISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQ 403
           ++ +I I   ++      +A  ++ A     G  V  D D  +  G ++   ++ G P++
Sbjct: 394 QVVIIPIVKKEEDRVPVNEAAARLAAAAKAAGIRVKVDMDERQTPGWKYNHWEMRGVPVR 453

Query: 404 VIVGSKFVSDSKVEIKHRLTGIRED-----MSLEEVINYASHRFSNNRP 447
           V VG K V         R  G         M       +     +  R 
Sbjct: 454 VEVGPKDVQSGTCVTARRDMGKEGKQMGVPMEAAAFTAHVQGLLAQARA 502


>gi|301061986|ref|ZP_07202704.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300443910|gb|EFK07957.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 483

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 7/241 (2%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L +L+E   R+      +L L +    +   G+  W P G      +      E
Sbjct: 228 KQLKKHLHMLEEARKRNHVKLGAQLELFSTY-EEVGAGMVVWHPNGAMLRHLLEEFEIAE 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G      P +   DLW +SG + +Y + M    + + ++    P +      I+ S
Sbjct: 287 HLKRGYALARGPEVLKTDLWKKSGHFANYRENMY-FTEIDGQSYGMKPMNCLSHMLIYGS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I+SYR+LP  ++++    R E      G+ R REF   DA+    TP         +  
Sbjct: 346 KIRSYRDLPRRYFELGTVHRHERSGVLHGLFRVREFTQDDAHIL-CTPGQLNDEIKGVLD 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +          +   + P     S E   LA     +    +  +D+ I   +  F
Sbjct: 405 FVREVMGIFQFDY-ELEISTRPEKSIGSDEDWELATQAL-EKAMDELQLDYEINEGDGAF 462

Query: 240 D 240
            
Sbjct: 463 Y 463


>gi|126178716|ref|YP_001046681.1| threonyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|166225444|sp|A3CTJ9|SYT_METMJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125861510|gb|ABN56699.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Methanoculleus
           marisnigri JR1]
          Length = 611

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 137/436 (31%), Gaps = 48/436 (11%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           P  AE     LM    ++    +   G + W+P G+   D ++  +  +    G + +  
Sbjct: 189 PEGAEPVHVDLMRAKELVEYEPRADVGNHRWMPRGKLIRDLLSDYVLTQVLDYGGMPVET 248

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +        +     +G+   R    N + M+        M  I      S   LP  
Sbjct: 249 PVMYDLGDAAIAEHAAKFGERQYRFKSGN-RDMMLRFAACFGMFSIMHDMHISPNTLPMK 307

Query: 132 FYQIQL-KFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            Y++    FR E +    G+ R R F M D ++     +G+  ++ +             
Sbjct: 308 LYELSTYSFRHEQKGEVIGLKRLRAFTMPDMHTLCRDMDGALTAFEEQL----------- 356

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                       IG     +     +T    VF                      +  ++
Sbjct: 357 -----------AIGWKTGEDL----ETPLVGVFRCTRDFFEQYELWVKGIVAKSGVPMLI 401

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E  +          +    D+           I+V     F  KY  P            
Sbjct: 402 EVLSERTHYWIAKVDLAAIDAQGRPIENPTVQIDVESADRFDIKYYAPDGTEV------- 454

Query: 310 HYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H   +     G+  RV+ A++E +   +   +P  +AP ++ L+ +    +      E+I
Sbjct: 455 HPPILHCSPTGSIERVICAMLEGTAAQEVPSFPTWLAPTQVRLVPVA---ERHICFAEEI 511

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--- 425
             RL+  G     DD  E +  +   A +   P   ++G +     ++ +  R       
Sbjct: 512 DTRLNAAGIRADVDDRDESVNKKIREAGMDWVPYVAVIGDQEAETGRLMVTIRKLSEKKK 571

Query: 426 --REDMSLEEVINYAS 439
             +E M+  E++    
Sbjct: 572 PFKESMTESELVQAVK 587


>gi|150401612|ref|YP_001325378.1| threonyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|166223353|sp|A6UW94|SYT_META3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150014315|gb|ABR56766.1| threonyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 630

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 135/419 (32%), Gaps = 51/419 (12%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           + EI  ++     G           W P G+   D +   +         + +  P +  
Sbjct: 214 EKEICDYEPSSDAGHFR--------WYPKGKLIRDLLQDYVYNMVVENNGMPVETPVMYD 265

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
                     D +G+   R    N K ++           + +      ++LP   Y++ 
Sbjct: 266 LGNKAIKEHADKFGERQYRFKQGN-KDLMLRFAACFGQFMMKKDMYILPKHLPLKLYELS 324

Query: 137 L-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR E R    G+ R R F M D ++     + +   +   F                
Sbjct: 325 TYSFRYEQRGELVGLKRLRGFTMPDMHTVCKDTKQTIEEFENQF---------------W 369

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           M  ++   G DL+  +  +    E     +K++          ++ +    + I+E    
Sbjct: 370 MCLKT---GDDLNTPYSTIFRFTEDFFEENKEWFFKVAK----EYKEKYGKDVILELIPE 422

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                    +  + DS           I+V          +   +      + K + V +
Sbjct: 423 RKHYWVGKVDMAVIDSFGRPIENPTVQIDVES--------AKRFNIVVHDGNEKTYPVIL 474

Query: 315 GSYGIGA-MRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                G+  RV+  ++E +      G   + P  ++P +  +I +        +    + 
Sbjct: 475 HCSPTGSIERVLCGLLEKASLDADAGAPPMLPVWLSPIQARVIPVA---DAHSEYALSVA 531

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV--EIKHRLTGIR 426
            +L + G    +DD  E +G +   A     P  +++G K V ++ +   I+ + T  +
Sbjct: 532 KKLRENGIRADFDDREESVGKKIRNAGKDWVPFVIVIGDKEVENNILTTTIREKSTLKK 590


>gi|325957845|ref|YP_004289311.1| threonyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325329277|gb|ADZ08339.1| threonyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 614

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 138/433 (31%), Gaps = 47/433 (10%)

Query: 19  EIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           E   H  ++R   +  +      G   W P G+   D +   +       GA+ +  P +
Sbjct: 198 EEPPHVKIMREKHLADYEPSADVGHLRWYPKGRLIRDLLADYVYNLVTERGAMPVETPIM 257

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
                       + +G+   R     +K ++           +      +++NLP   Y+
Sbjct: 258 YDLADDAIRVHAEKFGERQYR-MGTKNKELMLRYACCFGAFRVLSDSFLTWKNLPVGIYE 316

Query: 135 IQL-KFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +    FR E +    G+ R R F M D ++     + +   ++        +  + G+  
Sbjct: 317 LSTYSFRLEKKGEVVGLKRLRGFTMPDLHTVCADVDHAMVEFDGQID----MCKQTGID- 371

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                                 +     +  +                D I    ++E  
Sbjct: 372 ---------------------LEVNYEVIMRATKDFFEENKEWVFSSADKIGKPVLLEIL 410

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                      +    D L          I+V     FG  Y  P        + + H +
Sbjct: 411 PERKHYWIAKMDFAAIDYLGRPIENPTIQIDVESGERFGITYIDP-------DENEVHPI 463

Query: 313 QMGSYGIGA-MRVVAAVIESSHDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +     G+  RV+ +++E S   +     + P  + P ++ +I I    +   D  + I
Sbjct: 464 IIHCSPTGSIERVICSLLEKSAIERNFRPPMLPIWLTPSQVRVIPIA---ERHNDYAQDI 520

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             ++      V  D+  E +G +   A     P  +++G + +    V +  R T  + +
Sbjct: 521 VQKIRDQNVRVDLDERHETVGKKIRNAAGDWVPYVIVIGDRELEGGAVTVNVRETNEKIE 580

Query: 429 MSLEEVINYASHR 441
           M ++E++N     
Sbjct: 581 MDIDELVNRIHEE 593


>gi|197294712|ref|YP_001799253.1| prolyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|259511611|sp|B1VAN9|SYP_PHYAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171854039|emb|CAM12012.1| Prolyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 474

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 137/399 (34%), Gaps = 64/399 (16%)

Query: 27  LRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           L+  +I +   KG   +LP G    +N+   +  E                   + ++G 
Sbjct: 26  LKAELIAYSDVKGFIIYLPYGYALWENIQKYLNYE-------------------FQKTGH 66

Query: 86  YDSYGKEMLR---LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
            + Y   +          D    + P           + I S                  
Sbjct: 67  QNVYFPLVFSEKLFQKEKDHIQGFSPE---------AAMITSTGQKELF----------- 106

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                 V+R           F         SY  +   Y +  + +       +A    +
Sbjct: 107 ---EKLVIRP-----TSEVLFSQYYAKIISSYRDLPKLYNQFCNVV----RWEKATKPFL 154

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            G    EF  L   G T     K+ +D  + +      + +    +   +        + 
Sbjct: 155 RGK---EF--LWQEGHTVHATEKEALDQTLFAIQ--LYEKLGKELLALPFVCGRKTEKEK 207

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   Y GT ++      F+  D ++ YV   S+G+ + 
Sbjct: 208 FAGALITYSIEALMQDGQALQAGTSHYLGTNFAQSFQIQFQDQDHQNKYVHQTSWGV-ST 266

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R++ A+I    D +G+I P  +AP +I +I ++  +++ +   +KI+  L      V  D
Sbjct: 267 RLIGALIMVHSDDEGLILPPYIAPIQIVIIPLQPKNELVQAEAKKIFDDLKTT-YRVHLD 325

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              +  G +F+  +L G PL++ +G++ ++  +V I  R
Sbjct: 326 LQNKTPGWKFSQYELKGVPLRIEIGARDLAQGEVTIFQR 364


>gi|304404287|ref|ZP_07385949.1| prolyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304347265|gb|EFM13097.1| prolyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 482

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 132/445 (29%), Gaps = 69/445 (15%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     +  + AE+  +  +           G   + P G +  +N+   +     
Sbjct: 14  QSEDFSRWYIDVIKKAELMDYSPVR----------GCIVFRPEGYELWENIQRDLDRR-- 61

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                            + E+G  ++Y   +        K       H E          
Sbjct: 62  -----------------FKETGHRNAYFP-LFIPESFFQKEKE----HVEGF-------- 91

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
                LP        +   E       +R           F         SY  + V   
Sbjct: 92  --NPELP-----WVTEAAGEKLEERLAVRP-----TSETMFGHMYAKWIQSYRDLPVLIN 139

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +        +  +R E   +    + EF+      E       +                
Sbjct: 140 Q-------WANVVRWEKRTLPFLRTSEFLWQ----EGHTAHETETEAREETMRMLHVYRD 188

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              + +           S+     +     E      R ++ G   Y GT +++     F
Sbjct: 189 FVQDFLAIPVVVGQKTPSEKFAGAVDTYSIEAMMKDGRAVQAGTSHYLGTNFAVAFDIKF 248

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QV 360
              + +  +    S+G+ + R++ A+I    D +G+  P  VAP +  +I I       V
Sbjct: 249 LDRENQLQFTHTTSWGV-STRLIGALIMVHGDDRGLALPPKVAPTQAIMIPIGPPKTRDV 307

Query: 361 CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                ++++A+L   G     DD      G +F   ++ G PL++ +G +   + +  + 
Sbjct: 308 VMPRVDELFAQLKAAGVRTRVDDRSDVSPGWKFNEYEMRGVPLRIEIGPRDCENGQAVLV 367

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R++G +  +    ++         
Sbjct: 368 SRVSGEKRVVQQANLVEEVERMLEE 392


>gi|226528192|ref|NP_001140354.1| hypothetical protein LOC100272402 [Zea mays]
 gi|194699134|gb|ACF83651.1| unknown [Zea mays]
          Length = 285

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 5/177 (2%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RGI+       G  ++     TF+   G    V   S+     R +  ++ +  D K
Sbjct: 19  NTGRGIQGATSHCLGQNFAKMFDITFENEKGVREMVWQNSWA-YTTRSIGVMVMTHGDDK 77

Query: 337 GIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  VAP ++ +I +   D      + ACE     L + G     D       G ++
Sbjct: 78  GLVLPPKVAPIQVIVIPVPYKDADTTAIKGACESTVYTLDQSGIRADQDTRENYSPGWKY 137

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G PL++ +G K +++ +V +  R  G + D+ +  ++          +  L
Sbjct: 138 SHWEMKGVPLRIEIGPKDLANKQVRVVRRDNGAKVDIPVTNLVEEVKVLLDEIQKNL 194


>gi|326926536|ref|XP_003209455.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like,
           partial [Meleagris gallopavo]
          Length = 635

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 8/187 (4%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++E  +   +A    H+ + +       H  S G   +LP G    + +   IREE +
Sbjct: 285 KMMKEWEKFQEEARNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFLYNTLTDFIREEYH 344

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P + ++ LW  SG +  Y + M    D   +     P +      +F    
Sbjct: 345 KRNFTEVVSPNIFNSKLWETSGHWQHYSENMFSF-DIEKETFALKPMNCPGHCLMFAHRP 403

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R +P       +  R+EL     G+ R R F   DA+ F    +      +      
Sbjct: 404 RSWREMPLRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTIEQXXXXXIDIKIKDA 463

Query: 182 LRIFHRL 188
           L  +H+ 
Sbjct: 464 LGRYHQC 470



 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 75/194 (38%), Gaps = 17/194 (8%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-- 307
             +           + K+ D+L    + +   ++    F    +++L    T+ G DG  
Sbjct: 443 HIFCTIEQXXXXXIDIKIKDALGRYHQCATIQLD----FQLPIRFNL----TYVGKDGDD 494

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   V +    +G++  + A++  ++ GK   WP  ++P ++ ++ +    +      ++
Sbjct: 495 KKRPVIIHRAVLGSVERMIAILAENYGGK---WPFWLSPRQVMVVPVGPTSEG---YAQQ 548

Query: 368 IYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +     + G     D D    +  +   A L  +   ++VG K  ++  V ++ R   + 
Sbjct: 549 VCTEFFEAGFMTDVDLDQSCTLNKKIRNAQLAQYNFILVVGEKEKANHAVNVRTRDNKVH 608

Query: 427 EDMSLEEVINYASH 440
            ++ +   I     
Sbjct: 609 GEILVSSAIEKLKK 622


>gi|320583690|gb|EFW97903.1| proline--trna ligase, putative [Pichia angusta DL-1]
          Length = 666

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY---VQMGSYGIGAMRVVAAVIESSHD 334
           + RGI+     + G  +S   + + +   G +H        S+G+ + RV+  ++    D
Sbjct: 381 TGRGIQGATSHHLGQNFSKMFNISVENPLGPEHPKIYAHQTSWGL-STRVIGVMVMIHSD 439

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------RLSKVGCDVFWDDM-GE 386
            KG++ P  VA  ++ +I +   ++  ++   K+Y        RL K       D     
Sbjct: 440 NKGLVIPPRVAQNQVVIIPVGITNKTTKEIENKLYETCSELNSRLKKADVRTITDFRDNY 499

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             G +F+  +L G P+++ VG K ++++ V    R  G +  +SL+ V           +
Sbjct: 500 SPGWKFSDWELKGVPVRLEVGPKDIANNSVMAVRRDNGEKTALSLDTVETELPKLLEAIQ 559

Query: 447 PVL 449
             L
Sbjct: 560 KSL 562



 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLW 80
            +++ +  M+  +   G Y   P      + +     +     G      P  + S  L 
Sbjct: 178 QQILTKGEMLDYYDVSGCYILRPASYAIWEKIQRWFDDRIKADGVSNAYFPMFVSSRVLE 237

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 238 KEKDHVEGFAPEVAWVTRAGSSDLEEPIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 297

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +R+REFL ++ ++  LT E +    +K+   Y  ++  L
Sbjct: 298 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTKEEASEQVSKILDLYAGVYEEL 349


>gi|308068694|ref|YP_003870299.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Paenibacillus
           polymyxa E681]
 gi|305857973|gb|ADM69761.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Paenibacillus
           polymyxa E681]
          Length = 482

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 75/175 (42%), Gaps = 4/175 (2%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R ++ G   Y GT +++     +   +    +    S+G  + R++ A+I    D
Sbjct: 221 MMKDGRAVQAGTSHYMGTNFAVAFDIKYLSRENNLEFAHTTSWG-TSTRLIGALIMVHGD 279

Query: 335 GKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            +G+  P  VAP ++ ++ I             ++++A L + G  V  DD      G +
Sbjct: 280 DRGLALPPKVAPTQVIMVPIGPPKKRDAVIARADELFAELKQAGVRVKMDDRSDVSPGWK 339

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F   ++ G P+++ +G + + +    +  R++G ++ +  + ++       +  +
Sbjct: 340 FNEYEMRGVPVRMEIGPRDMENGVCVLVSRISGEKKIVQQDNLVEEVHAMLAQVQ 394



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S+ F     +  + AE+  +  +           G   + P G +  +++   +     
Sbjct: 14  QSEDFSRWYIDVIKKAELMDYSPVR----------GCIVFRPDGFEIWEHIKEAMDVRFR 63

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG      P       +  E    + +  E+  + +    + ++ +   PT E ++  +
Sbjct: 64  ETGHRNAYFPMFIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLAIRPTSETMIGHM 123

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+SYR+LP    Q     R E R     +R+ EFL ++ ++   T E ++    KM
Sbjct: 124 YSKWIQSYRDLPVLINQWANVVRWEKR-TLPFLRTSEFLWQEGHTAHETEEEAREETMKM 182

Query: 178 FVSYLRIFHRL 188
              Y  +   +
Sbjct: 183 LEVYREVIEEV 193


>gi|73670405|ref|YP_306420.1| threonyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|121729403|sp|Q467V2|SYT_METBF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72397567|gb|AAZ71840.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Methanosarcina
           barkeri str. Fusaro]
          Length = 635

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 149/441 (33%), Gaps = 60/441 (13%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R  +         G   + P G+     +   + +     GA+E+  P +   +  
Sbjct: 218 ELMRRLELADYEPGSDSGNMRYYPKGRLIKALLENYVLDVATDFGAMEVETPIMYDMNHP 277

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +         + + + M            +      SYRNLP    ++  
Sbjct: 278 TLKKYLDRFPARQ----YSIESDKRQMFLRFAACFGQFLMNHDMTISYRNLPLRMIEMTR 333

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D +S     + +   + K +   + +   +G+     
Sbjct: 334 YSFRKEQRGELVGLRRLRAFTMPDMHSLCEDMDQAVDQFKKQYDLCIDVLENIGIHIKDY 393

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                      + +F    ++ +  +      ++ P+               +VE W   
Sbjct: 394 EVAIR-----FTKDFY---ESNKELIVNMARTVNKPV---------------LVEMWDTR 430

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           +            D+L +   +S   I+V +              ++  ADGK +    +
Sbjct: 431 FFYFVLKFEFNFVDALAKASALSTVQIDVENAER--------YDISYVNADGKLERPTVL 482

Query: 315 GSYGIG-AMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                G   R + A++E     + +GK  + P  ++P ++ ++ I    +      E++ 
Sbjct: 483 HCSPSGAIERCIYALLEKAAMETEEGKVPMLPVWLSPTQVRIVPI---SEKHVAFAEEVS 539

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---- 425
            +L    C V  DD    IG +   A     P  V++G K + D  + +  R        
Sbjct: 540 QKLD---CRVDIDDRDLSIGKKVREAGREWVPYVVVIGDKEIEDGTINVTIRAESEQKKP 596

Query: 426 -REDMSLEEVINYASHRFSNN 445
            +  ++ EE+ +      +  
Sbjct: 597 KKVQITPEELNDRIKGEIAGK 617


>gi|226330398|ref|ZP_03805916.1| hypothetical protein PROPEN_04316 [Proteus penneri ATCC 35198]
 gi|225201193|gb|EEG83547.1| hypothetical protein PROPEN_04316 [Proteus penneri ATCC 35198]
          Length = 238

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 79/261 (30%), Gaps = 39/261 (14%)

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L LK I ++  + P           +A+    +     +      P E   +   I    
Sbjct: 7   LDLKKIVVKLSTRPEKRIGEDALWDIAEADLAKALTDNNIEFEYQPGEGAFYGPKIEFTL 66

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGA 305
                                           R  + G +      +SLP  + A++   
Sbjct: 67  YDC---------------------------LDRAWQCGTV---QLDFSLPGRLGASYVAE 96

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W   +AP ++ ++NI        D 
Sbjct: 97  NNERKVPVMLHRAVLGSLERFIGILTEEYAGFFPTW---LAPQQVVVMNITDG---QADY 150

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L   G     D   E+IG +     L   P  ++ G K V   KV ++ R   
Sbjct: 151 VQKLVKELQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGK 210

Query: 425 IREDMSLEEVINYASHRFSNN 445
               + + E          + 
Sbjct: 211 DLGSIDVNEFKEKLLQEIRSR 231


>gi|145640807|ref|ZP_01796389.1| prolyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274321|gb|EDK14185.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 125

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 82/116 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITD 116


>gi|29829188|ref|NP_823822.1| prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|81838431|sp|Q82JV8|SYP2_STRAW RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|29606294|dbj|BAC70357.1| putative prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 471

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/425 (15%), Positives = 128/425 (30%), Gaps = 69/425 (16%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F    Q+    AE+A +  +  T +I           P G    + +   +      TG 
Sbjct: 14  FPRWYQDLINKAELADNGPVRGTMVIR----------PYGYGLWERMQQEMDARIKETGT 63

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                P L     L  E+   + +  E+  +     K +            I   +    
Sbjct: 64  QNAYFPLLIPQSYLTKEADHVEGFAPELAVVTHGGGKELEEPAVVRPTSEMIINDY---- 119

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                 F +    +RD       ++                              +  + 
Sbjct: 120 ------FSKWVQSYRD-----LPLL---------------------------INQWANV- 140

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                    +R E  P     + EF  L   G T     ++  DF        + D +  
Sbjct: 141 ---------VRWELRPRLFLRTTEF--LWQEGHTAHATYEEARDFAAHIHRHVYADFMEN 189

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
              ++       A              E      + +++G     G  ++      +   
Sbjct: 190 VLAMDVVLGRKTAKERFAGAVN-TLTLEGMMGDGKALQMGTSHELGQNFARAFHTQYLSK 248

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +GK   V   S+G    R++ A++    D  G+  P  +A  ++ ++ IK  D+      
Sbjct: 249 EGKQELVWQTSWG-STTRMIGALVMMHGDDNGLRVPPRLAQTQVVVLAIK-GDEAVLAKV 306

Query: 366 EKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +   RL   G  V  DD  +   G +    +L G P++V VG + + +    +  R+ G
Sbjct: 307 RETGDRLKAAGLRVQVDDRTDVPFGRRAVDWELKGVPVRVEVGPRDLENGTAMVARRIPG 366

Query: 425 IREDM 429
            +E +
Sbjct: 367 GKEPV 371


>gi|293363544|ref|ZP_06610300.1| proline--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552893|gb|EFF41647.1| proline--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 478

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 136/410 (33%), Gaps = 58/410 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +KG   + P      + +   + E     G   + +P L    L                
Sbjct: 33  AKGTLVFKPNSYGIWELIQQNLNEIFKERGVNNVYLPLLIPESL---------------- 76

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            +   D    + P       ++        + L   +Y         +RP      + E 
Sbjct: 77  FSLEKDHIEGFNP-------ELATVTHVGNKELQEKYY---------IRP------TSEV 114

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L  D +        S  SYN + + Y +        +  +R E        S EF+    
Sbjct: 115 LFADLFK------NSIDSYNDLPLVYNQ-------WANVVRWEKTTNPFLRSREFLWQ-- 159

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E     +       +             N +            +           E  
Sbjct: 160 --EGHTCHADPIEARKLTRCMISTYAKFLKNFLAIPTIVGKKTPYEKFAGACSTYTVEAM 217

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++ G   Y    +S P S  FK  + +   V   S+G+ + R++ A+I +  D 
Sbjct: 218 MKDGRALQAGTSHYLAQNFSKPYSIVFKNKNNELENVYQTSWGV-STRLIGALIMTHGDN 276

Query: 336 KGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           +GII P  VAP +I LI +  A     ++  +K+Y  L +    V  D   +Q G + A 
Sbjct: 277 RGIIIPPRVAPIQIDLIELFGAKSAKVKEVSQKLYELLRRKW-RVRVDASDKQPGFKAAN 335

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++ G PL++ +G + + +  V I  R T  +  ++  +V      +  +
Sbjct: 336 SEIQGVPLRIEIGPRDLENDMVTIVRRDTLEKTLVNYNDVKKIIQKKLDD 385


>gi|254167083|ref|ZP_04873936.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623939|gb|EDY36501.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 612

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 145/435 (33%), Gaps = 50/435 (11%)

Query: 19  EIASHKLMLRTGMIHQHSKGI----YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           EI  H  ++R+  +  +  G       + P G+     +   +  +    GA+++  P +
Sbjct: 192 EIPPHVKLMRSLELADYEPGSDSGNMRYYPKGKLIKALIEDYVENKVIDYGAMQVETPIM 251

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +        + +      +    DK              +      SYRNLP   Y+
Sbjct: 252 YDFNHPSLKSYLNRFPARQYIVLSGKDKYF-LRFAACFGQFLMMHDATISYRNLPLRLYE 310

Query: 135 IQL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +    FR E +    G+ R R F M D ++       +   + + +   +++    GL  
Sbjct: 311 MAKYAFRREQKGELSGLRRLRAFTMPDMHTLAADMPQAMEEFKRQYEMAIKVLKDFGL-- 368

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIISLNSIVEQ 251
                                 + G+ +V                 +   +++   +++ 
Sbjct: 369 ----------------------ELGDYEVAIRFTRDFYEENKDFIRELVKLVNRPVLIQM 406

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           W   +            DSL +   +S   I+V +   +G         T+   +G + Y
Sbjct: 407 WDERFFYFVLKFEFNFVDSLNKAAALSTVQIDVENAERYG--------ITYYDENGNEKY 458

Query: 312 VQM--GSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             +   S      R++ A++E     +  GK    P  ++P ++ +I +K     C    
Sbjct: 459 PYILHCSPSGAVERILYAMLEKADMDAKKGKKPKLPVWLSPTQVRIIPVKDDFIGC---S 515

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +        G  V  DD    +  +   A+    P  V++G K      + ++ R  G+
Sbjct: 516 IQEMDYFRSEGFRVDIDDRDLSVSRKIRDAEKEWIPYIVVIGEKEKEKDILTVRIRGGGV 575

Query: 426 REDMSLEEVINYASH 440
           +E M  EE++     
Sbjct: 576 KE-MKREELLALLKK 589


>gi|255024838|ref|ZP_05296824.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 170

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 69/123 (56%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVGHIF  GTKYS  M+AT    +G+   + MG YGIG   +++ + E S+D  G +W
Sbjct: 48  GIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYGIGVSXILSTIAEQSNDENGFVW 107

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              ++PF + LI +    +      E +Y  L   G  V  DD  E+ G +FA ADL+G 
Sbjct: 108 DKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFSVLIDDRAERAGVKFADADLIGL 167

Query: 401 PLQ 403
           P++
Sbjct: 168 PIR 170


>gi|71894504|ref|YP_278612.1| prolyl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|114152218|sp|Q4A5S0|SYP_MYCS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71851292|gb|AAZ43901.1| prolyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 482

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 141/409 (34%), Gaps = 58/409 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +KG   + P      +N+   + E   + G   +  P                  + + +
Sbjct: 33  AKGTIIYKPNSYGIWENIQKTLNEVFKKHGVENIYAPLFIP--------------ESLFK 78

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +    +    + P  E        +   S + +              +RP          
Sbjct: 79  I--EKEHVQGFNP--ELATVTQVGNKKLSEKLI--------------VRPT--------- 111

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                  F    +   +SYN +     +I+++        +  + P     + EF  L  
Sbjct: 112 ---SEVIFANLFKEDINSYNDL----PKIYNQWANVVRWEKV-TKPFLR--TREF--LWQ 159

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G T    +++   F +         + +  +I                   +      K
Sbjct: 160 EGHTSHSSAEEARSFTVKMIKEYEKFLKNYLAIPVVSGKKTCNEKFAGAVSTYTVEAMMK 219

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G K+S P   +FK  + ++ +V   S+G+ + R++ A+I    D 
Sbjct: 220 --DGKALQTGTSHYLGQKFSRPYGISFKNKNNEEDFVYQTSWGV-STRLLGAIIMVHGDN 276

Query: 336 KGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           +G+I P  +AP K+ ++ I    +        KIY  LSK    V  D   +  G + + 
Sbjct: 277 RGVIIPPKIAPIKVDILEILADKNPEVSKVANKIYKELSKK-LSVRLDASNKSPGFKASQ 335

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++ G PL++ VG + + ++ V    R T  +  + LE V    ++   
Sbjct: 336 SEIEGVPLRIEVGPRDLENNCVTFVRRDTLEKTKVDLENVKKEVNNYLK 384


>gi|206901980|ref|YP_002250545.1| prolyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206741083|gb|ACI20141.1| prolyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 480

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/454 (16%), Positives = 149/454 (32%), Gaps = 66/454 (14%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQ 61
             K F+  L     D      +++L+  ++     KG     P G    +N+  I+ E+ 
Sbjct: 1   MEKKFVEELTSQKEDFSKWYTEVVLKADLVDYSPVKGCMVIKPYGYAIWENMQRILDEKI 60

Query: 62  NRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTD 116
             TG +    P       L  E+   + +  ++  +    D+ +       PT E ++  
Sbjct: 61  KATGHVNAYFPLFIPKSFLEKEAEHVEGFSPQVAWVTKGGDEELFEPLAVRPTSEAIICS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++   I+S+R+LP    Q     R E +     +R+ EFL ++ ++   T E ++    +
Sbjct: 121 MYSKWIQSWRDLPVLINQWANVVRWE-KETRPFLRTTEFLWQEGHTAHRTFEEAEEEALR 179

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           M   Y          +IP+ A     G    +E    A                 +   +
Sbjct: 180 MLNVYKDFVE--NDLAIPVIA-----GRKTENEKFAGA----------LHTYSIEVLLAD 222

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                  + +++ + +   +       + +       +  VS R I    I   G  Y L
Sbjct: 223 GRALQAGTSHNLGQHFAKAFDIMFQDVDGERKYVWQTSWGVSTRLI-GALIMTHGDDYGL 281

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            +              ++  Y I  +                IW                
Sbjct: 282 VL------------PPRVAPYQIVII---------------PIWKSE------------T 302

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 +  ++IY  L K    V  D D     G +F   +L G P++V +G K V   +
Sbjct: 303 DKTKVYNYVDEIYEVLRKY-FRVKVDKDEEHTPGWKFNEWELKGVPVRVEIGPKEVEKQE 361

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + +  R   I+  +  E ++    +   + +  L
Sbjct: 362 LYVARRDLRIKMSIKRENMVQDLENLLRDIQKTL 395


>gi|290957102|ref|YP_003488284.1| class II tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260646628|emb|CBG69725.1| putative class II tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 471

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 74/176 (42%), Gaps = 3/176 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + +++      G  ++   +  +   DG    V   S+G    R++ A++    D
Sbjct: 218 MMGDGKALQMATSHELGQNFARAFNTRYLSKDGSQELVWQTSWG-STTRMIGALVMMHGD 276

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFA 393
             G+  P  +A  ++ ++ IK  D+       ++  RL   G  V  DD  +   G +  
Sbjct: 277 DHGLRVPPRLAQTQVVVLAIK-DDEAVLAKVRELGDRLKAAGVRVRVDDRTDVPFGRRAV 335

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +L G P++V VG + + +    +  R++G +E ++ + ++         ++ +L
Sbjct: 336 DWELKGVPVRVEVGPRDLENGTAMLVRRISGGKEPVAFDALVARLPALLEEDQALL 391



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F    Q+    AE+A +  +  T +I           P G    + +   +      TG 
Sbjct: 14  FPRWYQDVISKAELADNGPVRGTMVIR----------PYGYGLWERMQQEMDARIKETGT 63

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSH 121
                P L     L  E+   + +  E+  +        ++  +  PT E ++   F   
Sbjct: 64  QNAYFPLLIPQSYLAREAEHVEGFAPELAVVTHGGGKDLEEPAVVRPTSEMIINASFSKW 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    Q     R ELRPR   +R+ EFL ++ ++   T + ++     +    
Sbjct: 124 VQSYRDLPLLINQWANVVRWELRPRL-FLRTSEFLWQEGHTAHATYDEARDFAAHIHR-- 180

Query: 182 LRIFHRL 188
            +++   
Sbjct: 181 -QVYEDF 186


>gi|217967219|ref|YP_002352725.1| prolyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336318|gb|ACK42111.1| prolyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 480

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 6/174 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++ G     G  ++      F+  DG+  YV   S+G+ + R++ A+I +  D  G++
Sbjct: 224 RALQAGTSHNLGQHFAKAFDIMFQDVDGERKYVWQTSWGV-STRLIGALIMTHGDDYGLV 282

Query: 340 WPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVA 395
            P  VAP++I +I I  ++       +  ++IY  L K    V  D D     G +F   
Sbjct: 283 LPPRVAPYQIVIIPIWKNETDKVKVYNYIDEIYEVLKKY-FRVKVDRDEEHTPGWKFNEW 341

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +L G P+++ +G K V   ++ +  R    +  +  E +I    +   + +  L
Sbjct: 342 ELKGVPVRLEIGPKEVEKQEIYVARRDLRTKISIRRENMIQDLENLLKDIQKTL 395


>gi|156742938|ref|YP_001433067.1| proline--tRNA ligase [Roseiflexus castenholzii DSM 13941]
 gi|156234266|gb|ABU59049.1| Proline--tRNA ligase [Roseiflexus castenholzii DSM 13941]
          Length = 564

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 5/209 (2%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           I   N     + ++    +      A  S  H     +      R S+ G  + H  + G
Sbjct: 360 IAGANRHGYHLRNVVYGRDWRADRIADISLAHPGDPCNRCGAPLRQSS-GFTIVHAIHHG 418

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
              +    ATF   +G    + + S+ +   R +  +IE   D  GI+W    APF + L
Sbjct: 419 ---AFAQDATFLDQEGVSRPIVLASFRMLLERALLTIIEQHCDQAGIVWTPETAPFDVHL 475

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +   D   R A + +Y  L   G  V +DD  E  G +F  ADL+G PL++++G +F+
Sbjct: 476 IRLGKQDAT-RQAADALYDELIAAGIAVLYDDRNETAGVKFNDADLIGLPLRLVIGDRFL 534

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D  VEIK R TG+   M  +E+I     
Sbjct: 535 TDGLVEIKQRATGMITKMPRQEIIAEVQK 563



 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 109/272 (40%), Gaps = 11/272 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P D +  + +LMLR G+    S G  ++LP+G + L  + A+  EE
Sbjct: 1   MRISALFGRTLRETPADIDYPALRLMLRAGLAR-LSAGALAFLPIGTRVLRRLEAMAHEE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDS---YGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
             R GA E+ +P          S R  S        +  +D++ + + + PT    +  +
Sbjct: 60  LTRIGAQEIHLP---PVRTLSASDRVQSRLLPASSTMHGSDQSRRLLAFDPTDTTTIASL 116

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
             S I SYR LP   YQ      ++ R  +     RE +    Y+        + +  ++
Sbjct: 117 AASEIASYRQLPALLYQRHPISCNDCRSSW----LREEIALTVYALGGGAHELEETGTQV 172

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + ++ RIF R  +  I   A        ++  ++ +++ G+  +   +      I     
Sbjct: 173 YSAFERIFRRCDMHLIAAEAGYTGENDQVTRAYVAVSEHGDIDLMICESCSYTAIREAAR 232

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              D     S+++       A +  +   + D
Sbjct: 233 TAFDSTLATSMMKDEPDHPEAIATPNCATIAD 264


>gi|212223716|ref|YP_002306952.1| prolyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212008673|gb|ACJ16055.1| prolyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 482

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 3/172 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R +++G +  +   ++      ++  +G   YV   ++G+ + R++AAVI    D
Sbjct: 217 MMPDGRTLQIGTMHNYRQNFAKAYEILYETENGDHEYVHQTTFGM-SERLLAAVIAIHGD 275

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +G++ P ++AP ++ ++ I   D          +I   L   G  V  D+   + G +F
Sbjct: 276 DRGMVLPPTIAPIQVVIVPIPKKDAGADVFTYAREIAEELRTAGLRVHVDERDIRPGRKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +L G PL++ VG + V   K  +  R T  +E +  + ++         
Sbjct: 336 YDWELKGVPLRIEVGPRDVEGRKAVLARRDTLTKETVERDRIVEAVRRTLDE 387



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 15/201 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+ F     E    A I                KG+  WLP G K + N+   I  E 
Sbjct: 7   KWSEEFSEWYNELIETAGIQDK---------RYPVKGMNIWLPYGLKIMRNIERFIHAEM 57

Query: 62  NRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTD 116
            RTG  E+  P L    +   E+     +  E+  +     D  D  +I  PT E  M  
Sbjct: 58  ERTGHDEVLFPALIPETEFQKEAEHIAGFEGEVFWVTHAGHDPLDIKLILRPTSETAMYS 117

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM-KDAYSFDLTPEGSKHSYN 175
           +F   I+S+ +LPF  YQI   +R E +    ++R RE     +A++   + E ++    
Sbjct: 118 MFALWIRSHADLPFKVYQIVNTYRYETKHTRPLIRVREISRFFEAHTAHDSFEDAERQIK 177

Query: 176 KMFVSYLRIFHRLGLKSIPMR 196
           +    +  +   L +  I  +
Sbjct: 178 EDLEIFDNLAKFLAIPYIVSK 198


>gi|20091717|ref|NP_617792.1| threonyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|22654112|sp|Q8TLX7|SYT_METAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19916894|gb|AAM06272.1| threonyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 635

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 145/441 (32%), Gaps = 60/441 (13%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R  +         G   + P G+     +   + +     GA+E+  P +   +  
Sbjct: 218 ELMRRLELADYEPGSDSGNMRYYPKGRLVKSLLENYVLDVATEFGAMEVETPLMYDMNHP 277

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +         + + + M            +      SY+NLP    ++  
Sbjct: 278 TLKKYLDRFPARQ----YSIESDKRQMFLRFAACFGQFLMNHDMTISYKNLPLRMIEMTR 333

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++       +   + + +   + +   +G+     
Sbjct: 334 YSFRKEQRGELVGLRRLRAFTMPDMHTLCEDMNQAVSQFKEQYDLCIDVLENVGIH---- 389

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                              D  E  +  ++DF +        +    ++   +VE W   
Sbjct: 390 ------------------IDDYEVAIRFTRDFYESN-KELVVNMAKTVNKPVLVEMWDTR 430

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-- 313
           +            D+L +   +S   I+V +              ++  ADGK       
Sbjct: 431 FFYFVLKFEFNFVDALAKASALSTVQIDVENAER--------YDISYVNADGKLERPIVL 482

Query: 314 MGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             S      R + A++E     + +GK  + P  ++P ++ ++ I    +      E++ 
Sbjct: 483 HCSPSGAIERCIYALLEKAAMETEEGKVPMLPVWLSPTQVRIVPI---SEKHLAFAEEVS 539

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---- 425
            +L    C V  DD    IG +   A     P  V++G K + +  + +  R        
Sbjct: 540 KKLD---CRVDIDDRDLSIGKKVREAGREWVPYVVVIGDKEMEEGTINVTVRAESEQNKP 596

Query: 426 -REDMSLEEVINYASHRFSNN 445
            +  ++ EE+        +  
Sbjct: 597 SKVQITPEELNARIRGEIAGK 617


>gi|259488480|tpe|CBF87946.1| TPA: prolyl-tRNA synthetase (AFU_orthologue; AFUA_1G10750)
           [Aspergillus nidulans FGSC A4]
          Length = 427

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 1/240 (0%)

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           + S E   + D  ++ V          +       +DI  L       T    + + V +
Sbjct: 188 ESSTERPQVLDLYDSHVHAYNRPPLKILEEAGCVIEDIDCLRLDSFPKTNRKLSLTRVQD 247

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                   +    S   +E+GH F+ GT+YS  + A    ++     +QMG +GIG  R+
Sbjct: 248 GDQCPKCTQGVLKSQTTVELGHTFHLGTRYSEVLKARIVNSENDRVPMQMGCHGIGVSRM 307

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + AV +S  D KG+ WP  +AP+++ ++    + +      + + +       DV  DD 
Sbjct: 308 ITAVADSLADAKGLNWPKIIAPWEVVIVPAPGNQEDALGVYDLLASD-KASPIDVLLDDR 366

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  G +   ADL+G+P+ V+VG+ + ++  +E++ R  GIR+D+    ++ +     + 
Sbjct: 367 DKTTGWKLGDADLIGYPVIVVVGNGWKTNRILEVQCRRLGIRQDVPDGGLLPFVQSLLAQ 426



 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD   E +  +Y  +  +Y R+F+ L +  +   A+SG +GG++SHEF  ++  
Sbjct: 1   MKDLYTFDDNVENALRTYESVKSAYTRLFNELKIPYLTAAADSGNMGGNMSHEFHFISSK 60

Query: 217 GETQVFCSKDF 227
           GE  +      
Sbjct: 61  GEDTLISCNHC 71


>gi|67518071|ref|XP_658805.1| hypothetical protein AN1201.2 [Aspergillus nidulans FGSC A4]
 gi|40746638|gb|EAA65794.1| hypothetical protein AN1201.2 [Aspergillus nidulans FGSC A4]
          Length = 416

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 1/240 (0%)

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           + S E   + D  ++ V          +       +DI  L       T    + + V +
Sbjct: 177 ESSTERPQVLDLYDSHVHAYNRPPLKILEEAGCVIEDIDCLRLDSFPKTNRKLSLTRVQD 236

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                   +    S   +E+GH F+ GT+YS  + A    ++     +QMG +GIG  R+
Sbjct: 237 GDQCPKCTQGVLKSQTTVELGHTFHLGTRYSEVLKARIVNSENDRVPMQMGCHGIGVSRM 296

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + AV +S  D KG+ WP  +AP+++ ++    + +      + + +       DV  DD 
Sbjct: 297 ITAVADSLADAKGLNWPKIIAPWEVVIVPAPGNQEDALGVYDLLASD-KASPIDVLLDDR 355

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  G +   ADL+G+P+ V+VG+ + ++  +E++ R  GIR+D+    ++ +     + 
Sbjct: 356 DKTTGWKLGDADLIGYPVIVVVGNGWKTNRILEVQCRRLGIRQDVPDGGLLPFVQSLLAQ 415



 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD   E +  +Y  +  +Y R+F+ L +  +   A+SG +GG++SHEF  ++  
Sbjct: 1   MKDLYTFDDNVENALRTYESVKSAYTRLFNELKIPYLTAAADSGNMGGNMSHEFHFISSK 60

Query: 217 GETQVFCSKDFMDFPIP 233
           GE  +           P
Sbjct: 61  GEDTLISCNHCDTPSSP 77


>gi|221122393|ref|XP_002164939.1| PREDICTED: similar to threonyl-tRNA synthetase, partial [Hydra
           magnipapillata]
          Length = 801

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 95/293 (32%), Gaps = 29/293 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +        +  S G   +LP G    + + + IR E
Sbjct: 301 KLLKEWKHFQEEAAKRDHRKIGKE--QELFFFNDLSPGSAFFLPKGAFIYNTLVSFIRSE 358

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+  P + S  LW +SG +  Y   M       ++     P +      +F +
Sbjct: 359 YNNRGFQEVITPNMFSTKLWEQSGHWQHYATNMFSFEVEKER-FALKPMNCPGHCVMFNN 417

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP  F    +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 418 RPRSWRELPLRFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCTMDQ----------- 466

Query: 180 SYLRIFHRLG-LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD--FPIPSEN 236
               +F R+   +    + +   IG    +      + G  +V     F    +      
Sbjct: 467 ----VFKRVETFQEEAAKRDHRKIGKSEYN------NRGFQEVITPNMFSTKLWEQSGHW 516

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             +   +    + ++  A        H     +     + +  R  + G +  
Sbjct: 517 QHYATNMFSFEVEKERFALKPMNCPGHCVMFNNRPRSWRELPLRFADFGVLHR 569



 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           + E N  G  E+  P + S  LW +SG +  Y   M       ++     P +      +
Sbjct: 488 KSEYNNRGFQEVITPNMFSTKLWEQSGHWQHYATNMFSFEVEKER-FALKPMNCPGHCVM 546

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F +  +S+R LP  F    +  R+EL     G+ R R F   DA+ F    +       +
Sbjct: 547 FNNRPRSWRELPLRFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCTMDQ--DEVLKR 604

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +    L I      K+I  R  S  I  + + +F  + +
Sbjct: 605 IISIVLMIAS----KNIAFRGSSDRIFPEKNGKFFKIVE 639


>gi|158312212|ref|YP_001504720.1| prolyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158107617|gb|ABW09814.1| prolyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 471

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 3/181 (1%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + +++      G  ++      F G DG  H     S+G  + R++  +I
Sbjct: 213 MTCEGMMGDGKALQMATSHELGQNFARAFDIDFLGPDGGRHLAWTTSWG-SSTRMIGGLI 271

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
            +  D  G+  P  +AP ++ ++ ++  D V      +I   L+ +G     D   G   
Sbjct: 272 MAHGDDNGLRVPPVLAPTQVVVLPVRDDDAVVT-KAREITDALTALGVRARLDARPGLSF 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +   A+L G P++V VG + ++   V +  R T  +  + L E            +  
Sbjct: 331 GRRVTDAELKGIPVRVEVGPRDLAAGNVTLARRDTAEKFPVPLGEAAGRVPVLLDEVQAS 390

Query: 449 L 449
           L
Sbjct: 391 L 391



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 16/164 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           RS  F    Q+    AE+A +  +  T +I           P G    + + A +     
Sbjct: 10  RSTDFPRWYQDVLDKAELADNGPVRGTMVIR----------PYGYALWERMQADVDTRIK 59

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDI 117
             GA+    P       L  E+   + +  E+  +     K     ++  PT E V+ + 
Sbjct: 60  AAGAVNAYFPLFIPESYLRREAEHVEGFSPELAVVTHGGGKELAEPVVVRPTSETVIGEY 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
                +SYR+LP    Q     R ELRPR   +R+ EFL ++ +
Sbjct: 120 MAKWTQSYRDLPLLLNQWANVVRWELRPRL-FLRTSEFLWQEGH 162


>gi|308272040|emb|CBX28648.1| Prolyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 506

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 134/443 (30%), Gaps = 88/443 (19%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGK 91
               +G     P G    +N+   + +    TG      P       L  E+   + + K
Sbjct: 33  RSPVRGCMVIKPWGYSLWENIVRELDDMFKDTGVKNAYFPLFIPLGFLEKEAAHVEGFAK 92

Query: 92  EMLRLADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           E   +                    + ++  PT E ++ D F + + SYR+LP    Q  
Sbjct: 93  ECAVVTHHRLEKNSEGRLVPAGPLTEPLVVRPTSETIIGDAFSNWVSSYRDLPLIINQWA 152

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E       MR+R         F  T E      +    S      R  L      
Sbjct: 153 NVVRWE-------MRTR--------IFLRTSEFLWQEGHTAHASEKEAMERTKLML---- 193

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                I   L+ E++ +                  I    T+ +                
Sbjct: 194 ----DIYAKLAEEYLAI----------------PVIKGRKTEAEKFPGAVETFSIEAM-- 231

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                                  +G++ G   + G  ++      F+  + K+ Y    S
Sbjct: 232 -------------------MHDRKGLQAGTSHFLGQNFAKASEIKFQSFEEKEEYAWTTS 272

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLS 373
           +G+ + R++  +I +  D  G+I P  VA   + LI I           +  EK+   L 
Sbjct: 273 WGV-STRLIGGIIMTHGDDNGVILPPRVASSHVVLIPIYRSPDDKPKVMEYVEKLGLELK 331

Query: 374 KV-----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIR 426
            +        V  DD     G++       G PL+V +G + ++   V I  R      +
Sbjct: 332 DLFYHHRKIRVEIDDRDIG-GARGWDWIKKGIPLRVEIGPRDIAKDSVFIGRRDKSHREK 390

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             M  ++ +    +   + +  L
Sbjct: 391 ISMKRDQFLKEIINILDDIQNNL 413


>gi|207742945|ref|YP_002259337.1| threonyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206594340|emb|CAQ61267.1| probable threonyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 379

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 5/150 (3%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYSEVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           SYR+LP    +     R+E      G+ R 
Sbjct: 346 SYRDLPLRLAEFGANHRNEPSGALHGLKRG 375


>gi|168000563|ref|XP_001752985.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695684|gb|EDQ82026.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 544

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 74/178 (41%), Gaps = 7/178 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RG++       G  +S      F+  + +   V   S+G+   R +  ++    D KG
Sbjct: 280 TGRGVQGATSHCLGQNFSKMFDILFEDENRERKNVWQNSWGLT-TRTIGVMVMIHGDNKG 338

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           ++ P  VAP ++ +I +        + C K+  +L + G  V  D       G +++  +
Sbjct: 339 LVLPPRVAPIQVVVIPVPFKGIDPSEECLKVTRQLQEAGFRVKDDLRDNYSPGWKYSHWE 398

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLEEVINYASHRFSNNRPVL 449
           L G PL++ +G + + + +V +  R       G  +D+ +  ++          +  L
Sbjct: 399 LKGVPLRIEIGPRDIENKQVRVVRRDLEDKTEGRSQDIPMANLVEKIGEILETMQKAL 456



 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 6/169 (3%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVES 83
           ++R  MI  +   G Y   P      +++     +E  + G      P  +    L  E 
Sbjct: 80  VVRGEMIEYYDVSGCYILRPWSYSIWESIKDFFDKEIKKMGIENTYFPLFVSEKALTKEK 139

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM  IF   I+ +R+LP    Q     
Sbjct: 140 DHVEGFAPEVAWVTRSGDSELEEPIAIRPTSETVMYPIFAKWIRGHRDLPLRINQWCNVV 199

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           R E +     +RSREFL ++ ++   T E +    +++   Y R++  L
Sbjct: 200 RWEFKHPTPFIRSREFLWQEGHTAFATKEEADVEVHQILELYRRVYEEL 248


>gi|62078771|ref|NP_001014042.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Rattus
           norvegicus]
 gi|54035500|gb|AAH83878.1| Threonyl-tRNA synthetase-like 2 [Rattus norvegicus]
          Length = 553

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 5/161 (3%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           ++   +A    H+ + +       H  S G   +LP G    + +   IREE ++    E
Sbjct: 379 EKFQEEARSRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTE 438

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +
Sbjct: 439 VLSPNMYNSKLWETSGHWQHYSNNMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREM 497

Query: 129 PFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           P  F    +  R+EL     G+ R R F   DA+ F +  +
Sbjct: 498 PVRFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCMVEQ 538


>gi|307595064|ref|YP_003901381.1| Threonyl-tRNA synthetase editing domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307550265|gb|ADN50330.1| Threonyl-tRNA synthetase editing domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 621

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 133/422 (31%), Gaps = 50/422 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G   + P     ++ V        N  G    ++    +              + + M  
Sbjct: 222 GHMRYGPAATLMMELVEDYAWRLANELGIPVFKIRGTNMFRRGERAIDEHARLFNERMYT 281

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSRE 154
           +    D+ +I           + R  + SYR++P    ++   +R E      +  R R 
Sbjct: 282 IEGDKDE-LIMRYAACFQQFAMIRDWVLSYRDIPIGMLEVADSYRYEQPGETVLCFRLRR 340

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F    + +     K+     R   +LG   + +   +     +     I LA
Sbjct: 341 FYMPDLHIFTRDLKNAMEVALKLHEVIFREIRKLGRDYVSLYNVTKQFYDEHRDYLIELA 400

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                            +V                 + D L   
Sbjct: 401 --------------------------KREGKPILVRVMPEQKYYWVLNVEFHIVDELRRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIES- 331
           + ++    +VG+   FG KY        +  +G+  Y  +    I     R + A++++ 
Sbjct: 435 REIATFQFDVGNAQRFGIKY--------RDENGEVKYPVIIHTAIIGSVERYIYALLDTA 486

Query: 332 ---SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
                 G+    P  V+P ++ +I I    +        I ++L      V  DD   E 
Sbjct: 487 AIAESRGEVPRLPTWVSPVQVRVIPI---SKEHLAFANDIASKLEDRMIRVDIDDRFDET 543

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--N 445
           +  +   A+    P  V+VG + V   K+ ++ R T    DM ++E+I+           
Sbjct: 544 LAKRVRDAETFWVPYIVVVGDREVKTGKLSVRVRGTQKPIDMGVDELISRVEEEIKGYPR 603

Query: 446 RP 447
           RP
Sbjct: 604 RP 605


>gi|324513749|gb|ADY45635.1| Prolyl-tRNA synthetase [Ascaris suum]
          Length = 287

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 39/276 (14%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGP 201
           + PRFG++RSREFLM D YSFD++ E +  +Y  +  +Y  I    L  +   +RA++G 
Sbjct: 1   MNPRFGLLRSREFLMNDLYSFDISEEDALKTYRIVSQAYNHILQDTLQFEVHVVRADNGQ 60

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG +SHE+ + + +GE  +   +                      I  +    +     
Sbjct: 61  IGGAVSHEYHLPSTSGEDSIVYCEKC-----------------SKGINAELARRHEKPCS 103

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
              E+    +P         +E+ H F  G  +S  + A ++        + M  YG+G 
Sbjct: 104 ECTEECLKVIP--------SVEIAHTFQLGDLFSKSLGARYQN-----VAMVMNCYGLGI 150

Query: 322 MRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARL---SK 374
            R++AA I+    D   +  PD++ PFK+++I        D         +  +L   + 
Sbjct: 151 GRIMAAAIDVLSPDQNSLRLPDAICPFKMAIIPPADSSKIDPELASYAISLAQQLDSTTN 210

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSK 409
           +  +VF+DD     IG +  +A  LG P   +VGS+
Sbjct: 211 LHNEVFYDDRTDYSIGKRLLLATQLGIPHIAVVGSR 246


>gi|288869805|ref|ZP_05976398.2| proline--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|288860320|gb|EFC92618.1| proline--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 469

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 90/217 (41%), Gaps = 5/217 (2%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +  I  +    +     +++   +T       D      +    +      + +++G I 
Sbjct: 163 EADIQVQEHIENYKEIFDTLGIPYTLTKRPEWDKFPGADYTMAFDAIMPDGKTLQIGTIH 222

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G  ++     TF+  DG+   V     G+ + RV+A+ I    D KG+  P  ++P +
Sbjct: 223 NLGQTFAKTFDITFEDKDGEHKLVYQTCAGL-SDRVIASAIGIHGDEKGLRLPPEISPKQ 281

Query: 349 ISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           I++I I  K   +     CE++       G  V  D+   + G +F   +L G P+++ +
Sbjct: 282 ITIIPILFKKGKEEVLAKCEELKKEFEAAGLRVNIDNRDIRPGKKFYDWELKGTPIKLEL 341

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G + + ++K     R    + ++ L+E  N+ S+   
Sbjct: 342 GPRDLENNKTIAMRRDQLEKIELDLDE--NFVSNVIR 376



 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 20/196 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    A I   +  ++         G+  W+P G +       +I+E  +
Sbjct: 5   FSEWFHDILEE----ANITDSRYPIK---------GMAVWMPYGFQIRKYTTNLIKEVYD 51

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
                E+  P L   A+L  E      +  E+  +        ++ +   PT E  +  +
Sbjct: 52  -RDHEEVLFPLLVPEAELAKEGLHVKGFEDEVYWVTHGGKTQLNEKLALRPTSETSIYPM 110

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNK 176
           +   I+S+ +LP  +YQI   FR E +    ++R RE    K+A++   + E +     +
Sbjct: 111 YSLWIRSHIDLPLKYYQIVNTFRYETKHTRPLIRVREITTFKEAHTAHASKEEADIQVQE 170

Query: 177 MFVSYLRIFHRLGLKS 192
              +Y  IF  LG+  
Sbjct: 171 HIENYKEIFDTLGIPY 186


>gi|150400144|ref|YP_001323911.1| threonyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|166225461|sp|A6US27|SYT_METVS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150012847|gb|ABR55299.1| threonyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 622

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 148/447 (33%), Gaps = 56/447 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           ++ EI  ++     G           W P G+   D ++  +       G + +  P + 
Sbjct: 205 KEKEICDYEPSSDAGHFR--------WYPKGKLIRDLLSDYVYNLVVENGGMPVETPVMY 256

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      D +G+   R    N K ++           + +      ++LP   Y++
Sbjct: 257 DLQNNAIREHADKFGERQYRFRQGN-KDLMLRFAACFGQFMMKKDMYLLPKHLPLKLYEL 315

Query: 136 QL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E R    G+ R R F M D ++  +    +  ++   F   L+          
Sbjct: 316 STYSFRYEQRGELVGLKRLRGFTMPDMHTVCIDMNQAMEAFENQFWMGLKTGDDFKTPYS 375

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   +     +    F  +A   E ++   KD +   +P     +   + +  +     
Sbjct: 376 IIFRFTNEFFEENKEWFFKMA--KEYKLKYGKDAILEILPGRKHYWVGKVDMAVV----- 428

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                          DS           I+V     FG         T    D   H + 
Sbjct: 429 ---------------DSFGRPIENPTVQIDVESAQRFG--------ITVHDGDKTIHPII 465

Query: 314 MGSYGIGA-MRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +     G+  RV+  ++E+++    + K    P  + P +  +I +   ++   +   ++
Sbjct: 466 LHCSPTGSIERVLCGLLENAYIKTLEDKPPALPTWLTPIQARVIPVSERNE---EFALEV 522

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG---- 424
             +L + G    +DD  + +G +   A        V++G   +   K+ +  R       
Sbjct: 523 VNKLRESGIRTDFDDREDSMGKKIRNAGTDWVNYVVVIGDNEMESKKLTVTLREESSIKQ 582

Query: 425 -IREDMSLEEVINYASHRF--SNNRPV 448
             +E +++ E+I   +     S NRP+
Sbjct: 583 PKKESLTVGELIEKVTSEIKGSPNRPL 609


>gi|126459249|ref|YP_001055527.1| threonyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|166225487|sp|A3MTU4|SYT_PYRCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126248970|gb|ABO08061.1| aminoacyl-transfer RNA synthetase, class II [Pyrobaculum
           calidifontis JCM 11548]
          Length = 607

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 135/413 (32%), Gaps = 49/413 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G   + P     ++ V     +     G     +       L  +        +G+ +  
Sbjct: 213 GHMRYGPEATVMMELVEDYAYQVAKSLGIPVFKIRGTNMFKLSEKAIETHARLFGERLYI 272

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSRE 154
           +    D  +I           + +  + SYRNLPF   +I   +R E       + R R 
Sbjct: 273 VES--DTDLILRYAACFQQFAMAKDWVISYRNLPFGMLEIADSYRHEQPGETVVLFRLRR 330

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F      +     K+  +  R   +LG   + +         +++ EF    
Sbjct: 331 FYMPDLHIFTKDLAEAVEVSYKVHEAIFREIGKLGRTYVSLY--------NVTEEFY--- 379

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                     K   D+ +     +         +V                 + D L   
Sbjct: 380 ----------KSHRDYLV-----ELARREGKPILVRILPTQKYYWVLNVEYHIVDELGRP 424

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIES- 331
           + ++   I+VG+   FG KY           + +  Y  +    I     R + AV ++ 
Sbjct: 425 REIATFQIDVGNAQRFGIKY--------VDENNQVKYPVIIHTAIIGSVERYLYAVFDTI 476

Query: 332 ---SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +GK    P  +AP ++ +I +   +        ++  +L + G  V  DD  E +
Sbjct: 477 AKAEREGKTPRLPTWLAPVQVRIIPVARDN---LKFAMEVADKLEEAGIRVDVDDRDETL 533

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +   A+    P   +VGSK      + ++ R  G +  M+ EE+I      
Sbjct: 534 SKRIRDAETSWVPYVCVVGSKEEETGTLSVRIRGEG-QAKMTAEELIKRVREE 585


>gi|169244471|gb|ACA50509.1| aminoacyl-tRNA synthase [Oryza sativa Japonica Group]
          Length = 510

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 74/177 (41%), Gaps = 5/177 (2%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RG++       G  ++     TF+   G    V   S+     R +  ++ +  D K
Sbjct: 244 NTGRGVQGATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWA-YTTRSIGVMVMTHGDDK 302

Query: 337 GIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  VAP ++ +I +   D       + C+K    L K G     D       G ++
Sbjct: 303 GLVLPPRVAPLQVIVIPVPYKDVDTTAIVNECKKTVETLEKAGIRADLDTRANYSPGWKY 362

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G PL++ +G K +++++  +  R  G + D+   +++   +      +  L
Sbjct: 363 SHWEMKGVPLRIEIGPKDMANNQARVVRRDNGAKADIPTADLVEKVNGLLDEVQKNL 419



 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++ + MI  +   G Y   P   +  + +      E  +        P  +    L  
Sbjct: 43  EVVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQK 102

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        +  +   PT E VM   F   I+S+R+LP    Q   
Sbjct: 103 EKDHIEGFAPEVAWVTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCN 162

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R E       +RSREFL ++ ++   T E +     ++   Y RI+   
Sbjct: 163 VVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADEEVLQILELYRRIYEEF 213


>gi|124027839|ref|YP_001013159.1| threonyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
 gi|166223348|sp|A2BLF3|SYT_HYPBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123978533|gb|ABM80814.1| Threonyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
          Length = 625

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 112/351 (31%), Gaps = 41/351 (11%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSREFLMK 158
           + K ++           + + ++ SYR+LP   ++I   +R E      +  R R F M 
Sbjct: 280 DKKHLVMRYAACHQQFSMLKDYVLSYRDLPLGMFEIADSYRLEQSGEVTLCFRLRRFYMP 339

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D +    + E +     ++     R   +LG     +              + V  D  E
Sbjct: 340 DLHILARSVEEAVKIAEELQKIIHREAEKLGQTYYAV--------------YNVTEDFWE 385

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +       ++            +             Y          + DS    + ++
Sbjct: 386 EK---RNLLLELVRRDGKPALITVYPAGIYYWVVNVEY---------HIVDSAGRPREIA 433

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI------GAMRVVAAVIESS 332
               +VG+   FG +Y           + K+HY  +    +          V  A ++  
Sbjct: 434 TFQFDVGNAKRFGIRY--------VDENNKEHYPVIIHTALIGSIERYIYMVFDAAVKME 485

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             G+    P  +AP ++ LI +    +      EK+ + L +    V  DD    +G + 
Sbjct: 486 RRGQTPYIPTWLAPIQVRLIPVNPSSEQQLSHAEKVASLLERHLIRVDIDDRQLSLGRRI 545

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             A     P   ++G + V    V +  R T  R  +  EE++        
Sbjct: 546 RDAAREWIPYIAVIGDREVETGTVNVTIRRTNDRVAVKPEELLEMVLKDLE 596


>gi|146084156|ref|XP_001464941.1| bifunctional aminoacyl-trna synthetase [Leishmania infantum JPCM5]
 gi|134069036|emb|CAM67181.1| putative bifunctional aminoacyl-tRNA synthetase [Leishmania
           infantum JPCM5]
          Length = 722

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 132/414 (31%), Gaps = 59/414 (14%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + +  MI  +   G Y   P        V   +  +  + G  +   P   S + L  E 
Sbjct: 233 ITKAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRNCLEREK 292

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I+S+R+LP          
Sbjct: 293 DHIEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVI 352

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       +R+REFL ++ +      E        +   Y  ++ +  L ++P+    
Sbjct: 353 RWEFSHPTPFIRTREFLWQEGHCAWAKAEECAKEVLDILECYASVYEQ--LLAVPV---- 406

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             + G  + +F      G       + F++             +  N             
Sbjct: 407 --VRGRKTEKF-----AGGDYTTTVETFIEAVGRGCQGATSHNLGQNFGKMFDIR---FQ 456

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
              +NE+       +  +S R I V             M        G           +
Sbjct: 457 DPENNEQTLIPWQNSWGLSTRVIGV-------------MIMVHGDNRGMVMPP-----RV 498

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + +V+                  + P  I+    +   Q    +C ++ + L + G   
Sbjct: 499 ASTQVI------------------IIPVGITKDTTEEARQELLASCRRLESELCEGGVRA 540

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             D       G +F   ++ G PL+V +G + +++  + +  R +G R  +  +
Sbjct: 541 KCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVVWD 594


>gi|297613111|ref|NP_001066707.2| Os12g0443700 [Oryza sativa Japonica Group]
 gi|77554943|gb|ABA97739.1| Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza
           sativa Japonica Group]
 gi|215697485|dbj|BAG91479.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740854|dbj|BAG97010.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218186797|gb|EEC69224.1| hypothetical protein OsI_38226 [Oryza sativa Indica Group]
 gi|222617028|gb|EEE53160.1| hypothetical protein OsJ_35987 [Oryza sativa Japonica Group]
 gi|255670276|dbj|BAF29726.2| Os12g0443700 [Oryza sativa Japonica Group]
          Length = 510

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 74/177 (41%), Gaps = 5/177 (2%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RG++       G  ++     TF+   G    V   S+     R +  ++ +  D K
Sbjct: 244 NTGRGVQGATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWA-YTTRSIGVMVMTHGDDK 302

Query: 337 GIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  VAP ++ +I +   D       + C+K    L K G     D       G ++
Sbjct: 303 GLVLPPRVAPLQVIVIPVPYKDVDTTAIVNECKKTVETLEKAGIRADLDTRENYSPGWKY 362

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G PL++ +G K +++++  +  R  G + D+   +++   +      +  L
Sbjct: 363 SHWEMKGVPLRIEIGPKDMANNQARVVRRDNGAKADIPTADLVEKVNGLLDEVQKNL 419



 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++ + MI  +   G Y   P   +  + +      E  +        P  +    L  
Sbjct: 43  EVVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQK 102

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        +  +   PT E VM   F   I+S+R+LP    Q   
Sbjct: 103 EKDHIEGFAPEVAWVTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCN 162

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R E       +RSREFL ++ ++   T E +     ++   Y RI+   
Sbjct: 163 VVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADEEVLQILELYRRIYEEF 213


>gi|255731874|ref|XP_002550861.1| hypothetical protein CTRG_05159 [Candida tropicalis MYA-3404]
 gi|240131870|gb|EER31429.1| hypothetical protein CTRG_05159 [Candida tropicalis MYA-3404]
          Length = 684

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY---VQMGSYGIGAMRVVAAVIESSHD 334
           + RGI+ G   + GT +S   + + +  +G +         S+G+ + RV+  +I +  D
Sbjct: 399 TGRGIQGGTSHHLGTNFSKMFNLSVESPEGPEKPRIFAYQNSWGL-STRVIGVMIMTHSD 457

Query: 335 GKGIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-E 386
            KG++ P  +A ++  +I +        A  +   +  +KI   L   G     D     
Sbjct: 458 NKGLVLPPRIAQYQAVVIPVGLTSKSSDAQRKDINEGAQKIEKTLQDAGIRATGDYREIY 517

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             G +FA  +L G PL++  G K ++ ++V +  R  G +  + L+E+
Sbjct: 518 NPGWKFADWELKGVPLRLEFGPKDLAGNQVTVVRRNDGKKYTVKLDEL 565



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 5/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      + +         + G      P   S   L  E    + +  E+  
Sbjct: 211 SGCYILRPNSYFVWETIQDYFNVRIKKLGVQNAYFPMFVSQRVLEKEKDHIEGFAPEVAW 270

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 271 VTRAGSSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 330

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +REFL ++ ++  LT + +     ++   Y  ++  L
Sbjct: 331 TREFLWQEGHTAHLTQDAAAEEVLQILDYYAGVYEEL 367


>gi|71029934|ref|XP_764609.1| prolyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68351565|gb|EAN32326.1| prolyl-tRNA synthetase, putative [Theileria parva]
          Length = 461

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 137/376 (36%), Gaps = 67/376 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + S GIY+ LPLG + ++ +  I + E  + GA ++S P L    +   +G        +
Sbjct: 74  KLSSGIYTTLPLGHRIINRITNIFKVELCKLGAAQLSFPLLNPEKVVSNTGNTVLDND-L 132

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSH--IKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +++           T E++   + ++     S   LP   YQI  KFRDELR   G +R
Sbjct: 133 FKVSGNGSVEYRLSGTCEDLCNIVLKNEMIPLSKLQLPVLLYQINTKFRDELRVNEGKVR 192

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +EFLM D YS   + + S  +Y  +  S+  +   LGL    +      I   +S E  
Sbjct: 193 LKEFLMLDMYSLHSSEQCSDSTYTLVLESFANVLRLLGLNFATVNCNKNNI---VSDELR 249

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V                               S N      T               D  
Sbjct: 250 VQ-----------------------------HSHNHDQNSNTELEVGHLFKFGTHYSDVY 280

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                +S R  E                            + M SYGIG  R++  +I +
Sbjct: 281 GLKFEISGRKRE---------------------------KLYMNSYGIGINRLLNVLINN 313

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  GI  P  +AP+ +++I+   +         +I   L K G  V +DD  E I ++
Sbjct: 314 YSDEFGIKLPQLIAPYDVTIIDSTTNGDG-----WEITRGLMKKGLTVLYDDRSETIKNK 368

Query: 392 FAVADLLGFPLQVIVG 407
              +  +G P  +I+G
Sbjct: 369 LLDSKRIGVPHILILG 384


>gi|148642347|ref|YP_001272860.1| prolyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|222444465|ref|ZP_03606980.1| hypothetical protein METSMIALI_00076 [Methanobrevibacter smithii
           DSM 2375]
 gi|172048060|sp|A5UJW4|SYP_METS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148551364|gb|ABQ86492.1| prolyl-tRNA synthetase, ProS [Methanobrevibacter smithii ATCC
           35061]
 gi|222434030|gb|EEE41195.1| hypothetical protein METSMIALI_00076 [Methanobrevibacter smithii
           DSM 2375]
          Length = 469

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +  I  +    +     +++   +T       D      +    +      + +++G I 
Sbjct: 163 EADIQVQEHIENYKEIFDTLGIPYTLTKRPEWDKFPGADYTMAFDAIMPDGKTLQIGTIH 222

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G  ++     TF+  DG+   V     G+ + RV+A+ I    D KG+  P  ++P +
Sbjct: 223 NLGQTFAKTFDITFEDKDGEHKLVYQTCAGL-SDRVIASAIGIHGDEKGLRLPPEISPKQ 281

Query: 349 ISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           I++I I  K   +     CE++       G  V  D+   + G +F   +L G P+++ +
Sbjct: 282 ITIIPILFKKGKEEVLAKCEELKKEFEAAGLRVNIDNRDIRPGKKFYDWELKGTPIKLEL 341

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEE--------VINYASHRFSNN 445
           G + + ++K     R    + ++ L+E        +I+  +   + +
Sbjct: 342 GPRDLENNKTIAMRRDQLEKIELDLDENLVSNVIRLIDELNENLAES 388



 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 20/196 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    A I   +  ++         G+  W+P G +       +I+E  +
Sbjct: 5   FSEWFHDILEE----ANITDSRYPIK---------GMAVWMPYGFQIRKYTTNLIKEVYD 51

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDI 117
                E+  P L   A+L  E      +  E+  +        ++ +   PT E  +  +
Sbjct: 52  -RDHEEVLFPLLVPEAELAKEGLHVKGFEDEVYWVTHGGKTQLNEKLALRPTSETSIYPM 110

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNK 176
           +   I+S+ +LP  +YQI   FR E +    ++R RE    K+A++   + E +     +
Sbjct: 111 YSLWIRSHIDLPLKYYQIVNTFRYETKHTRPLIRVREITTFKEAHTAHASKEEADIQVQE 170

Query: 177 MFVSYLRIFHRLGLKS 192
              +Y  IF  LG+  
Sbjct: 171 HIENYKEIFDTLGIPY 186


>gi|218249438|ref|YP_002374917.1| prolyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226321716|ref|ZP_03797242.1| prolyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|259511576|sp|B7J1X2|SYP_BORBZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218164626|gb|ACK74687.1| prolyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226232905|gb|EEH31658.1| prolyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 488

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 152/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D C+ +   L K G  V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYCDCVVDALKKAGFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|145590982|ref|YP_001152984.1| threonyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|166225486|sp|A4WIW5|SYT_PYRAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145282750|gb|ABP50332.1| aminoacyl-transfer RNA synthetase, class II [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 608

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 129/415 (31%), Gaps = 49/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G   + P     ++ V           G    ++    +     +        +G+ +  
Sbjct: 214 GHMRYAPEATVMMELVEDYAYMVAKSLGIPVFKIRGTNMFKLSEYAIESHARLFGERLYV 273

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSRE 154
           +    D  +I           + +  + SYR+LPF   +I   +R E       + R R 
Sbjct: 274 VES--DTDLILRYAACFQQFAMVKDWVISYRHLPFGLLEIADSYRHEQPGETVLLFRLRR 331

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F    + +     K+     R   +LG   + +         +++ +F    
Sbjct: 332 FYMPDLHIFTKDLKEAMEVTFKLHEVIFREIGKLGRTYVSLY--------NVTEDFY--- 380

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G  +        +                  +V                 + D L   
Sbjct: 381 -KGHREYLVELARRE--------------GKPILVRILPGQKYYWVLNVEFHIVDELGRP 425

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESS 332
           + ++   I+VG+   FG KY           + +  Y  +    I     R + AV ++ 
Sbjct: 426 REIATFQIDVGNAQRFGIKY--------VDENNQVRYPVIIHTAILGSVERYLYAVFDTM 477

Query: 333 H----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +GK    P  ++P +  +I +   +         +   L   G  V  DD  E +
Sbjct: 478 AKMEKEGKTPRLPTWLSPVQTRVIPVSKEN---LKYAMAVADLLEAEGIRVDVDDREETL 534

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +   A+    P  ++VGSK  ++  V ++ R  G +     EE+         
Sbjct: 535 SKKIRDAETAWVPYIIVVGSKEEAEGTVTVRERGGG-QYKAKAEELAKKIREEVK 588


>gi|296242499|ref|YP_003649986.1| threonyl-tRNA synthetase editing domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296095083|gb|ADG91034.1| Threonyl-tRNA synthetase editing domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 613

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 147/416 (35%), Gaps = 53/416 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTG-----AIEMSVPTLQSADLWVESGRYDSYGKE 92
           G   + P G   +++V     +  N  G      +  ++  L+   ++      + +G  
Sbjct: 214 GHMRYGPHGVVMMESVFRYSWKVANELGIPVFKVMGTNMFNLKERPVYE---HAELFGDR 270

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MR 151
           +  +    D+  +           + R  + SY +LPF  +++   +R E R    +  R
Sbjct: 271 LYEVGLDEDR-FVLRYAACHQQFAMLRDWVISYSHLPFGAFEVADSYRLEQRGEVALCFR 329

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F M D + F+   E +      +    L    +LG K + +   +     +   E +
Sbjct: 330 LRKFYMPDLHIFNKNLEEAVRVSRIVQEKILEEAGKLGRKYVALYNVTSDFLENHRQELL 389

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                     +F    +   ++                 + D+L
Sbjct: 390 --------------------------EFVRRENYPVLLAVIPGGIYYWVLNVEYHIIDNL 423

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVI 329
              + ++   I+VG+    G ++    + TF    G+ H+  +    I  G  R +  ++
Sbjct: 424 KRPREIATFQIDVGN----GRRF----NITFVDEKGEKHHPVIIHTAILGGVERYIYMIL 475

Query: 330 ES----SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           ++      +G+    P  ++P +  +I +    +   +   KI   L   G  V  DD  
Sbjct: 476 DTAAIAEANGQTPYIPTWISPVQARIIPV---SKEYVEHALKIAVELQNQGFRVDVDDRD 532

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           E +G +   A     P  V+VG + V  + + ++ R +  ++ MSLEE        
Sbjct: 533 ETLGKKIRDAGREWIPYIVVVGEREVKTNTLNVRIRRSNDQKAMSLEEFARILREE 588


>gi|268567756|ref|XP_002647865.1| Hypothetical protein CBG23664 [Caenorhabditis briggsae]
 gi|187040879|emb|CAP20462.1| hypothetical protein CBG_23664 [Caenorhabditis briggsae AF16]
          Length = 265

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 1/164 (0%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H++++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++ +P + +  LW  
Sbjct: 27  HRMLIENGFILPTAKGFYSLLPLGQRVIDKLCRILDSEFQNSGAMKVGMPIVGTKQLWDR 86

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRD 141
           + R+++ G EML+  DR    +   PT EE+ TD+        +  LP   YQI  KFRD
Sbjct: 87  TRRWEAMGSEMLKFEDRQKAQLCLQPTAEEMCTDLIAQLSPLKKSQLPVMLYQIGEKFRD 146

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           E+ PRFG+MR+R+FLMKD YSF L  E S+ +Y+ +   Y RIF
Sbjct: 147 EMNPRFGLMRARQFLMKDMYSFALDSESSQKTYHNISNVYDRIF 190


>gi|91773300|ref|YP_565992.1| threonyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121684342|sp|Q12WD4|SYT_METBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91712315|gb|ABE52242.1| Threonyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 635

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 146/438 (33%), Gaps = 60/438 (13%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R  +         G   + P G+     +   + EE ++ GA+E+  P +   +  
Sbjct: 218 ELMRRLEIADYEPGSDSGNMRYYPKGRLMKSLIENFVLEESSKIGAMEVETPLMYDMNHP 277

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +         + + + M            +      SY+NLP    ++  
Sbjct: 278 TLKKYLDRFPARQ----YSIESDKRHMFLRFAACFGQFLMNHDMTISYKNLPLKMIEMTR 333

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++     E +   + + +   + I  ++G+     
Sbjct: 334 YSFRKEQRGELVGLRRLRAFTMPDMHTLCPDMEAAISQFGEQYSMCIDILRKIGIDVSDF 393

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                      + EF    D  E                  T+    +    +VE W   
Sbjct: 394 EVAIR-----FTREFYD--DNRE----------------FITELAKKVDKPVLVEMWDTR 430

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           +            D++ +   +S   I+V +               +  A+GK +    +
Sbjct: 431 FFYFVLKFEFNFVDAIAKASALSTVQIDVENAER--------YDINYVDANGKINRPTIL 482

Query: 315 GSYGIG-AMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                G   R + A++E +     +GK    P  ++P ++ +I I    +   D  +++ 
Sbjct: 483 HCSPSGAIERCIYALLEKAAMDAEEGKVPNLPVWLSPTQVRVIPIA---ERHMDFAQEVA 539

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---- 425
             L    C    DD  E +G +   A     P   ++G   V   KV +  R        
Sbjct: 540 DSLL---CRADIDDREETVGKKIRDAGREWIPYVAVIGDSEVESGKVTVTIRAESEPKKP 596

Query: 426 -REDMSLEEVINYASHRF 442
            + +M+ EE+     +  
Sbjct: 597 MKVEMTAEELSERVFNEI 614


>gi|254167669|ref|ZP_04874520.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289596979|ref|YP_003483675.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623478|gb|EDY36042.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534766|gb|ADD09113.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 612

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 143/435 (32%), Gaps = 50/435 (11%)

Query: 19  EIASHKLMLRTGMIHQHSKGI----YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           EI  H  ++R+  +  +  G       + P G+     +   +  +    GA+++  P +
Sbjct: 192 EIPPHVKLMRSLELADYEPGSDSGNMRYYPKGKLIKALIEDYVENKVIDYGAMQVETPIM 251

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +        + +      +    DK              +      SYRNLP   Y+
Sbjct: 252 YDFNHPSLKSYLNRFPARQYIVLSGKDKYF-LRFAACFGQFLMMHDATISYRNLPLRLYE 310

Query: 135 IQL-KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +    FR E +    G+ R R F M D ++       +   + + +   + +    GL  
Sbjct: 311 MAKYAFRREQKGELSGLRRLRAFTMPDMHTLAADMPQAMEEFKRQYEMAIEVLKDFGL-- 368

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIISLNSIVEQ 251
                                 + G+ +V                 +   +++   +++ 
Sbjct: 369 ----------------------ELGDYEVAIRFTRDFYEENKDFIRELVKLVNRPVLIQM 406

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           W   +            DSL +   +S   I+V +   +G         T+   +G + Y
Sbjct: 407 WDERFFYFVLKFEFNFVDSLNKAAALSTVQIDVENAERYG--------ITYYDENGNERY 458

Query: 312 VQM--GSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             +   S      R++ A++E     +  GK    P  ++P ++ +I +K     C    
Sbjct: 459 PYILHCSPSGAVERILYAMLEKADMDAKMGKKPKLPVWLSPTQVRIIPVKDDFIGC---S 515

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +           V  DD    +  +   A+    P  V++G K      + ++ R  G+
Sbjct: 516 IQEMDYFRSEEFRVDIDDRDLSVSRKIRDAEKEWIPYIVVIGEKEKEKDILTVRIRGGGV 575

Query: 426 REDMSLEEVINYASH 440
           +E M  EE++     
Sbjct: 576 KE-MKREELLALLKK 589


>gi|284161870|ref|YP_003400493.1| prolyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011867|gb|ADB57820.1| prolyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 476

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 5/161 (3%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R +++G +      ++      ++  +G   Y     YGI + R +A++I    D 
Sbjct: 219 MPDGRTLQIGTVHNLADNFARTFEIKYETPEGDHAYAHQTCYGI-SERCIASLISIHGDD 277

Query: 336 KGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G++ P  VAP +I +I I  K  ++   +   K+Y RL      V  DD  E+ G+++ 
Sbjct: 278 LGLVLPFEVAPVQIVIIPILYKGKEEKVMELSRKLYERLKC--FRVVLDDSDERPGAKYY 335

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             +L G P++  +G +   + +V +  R    +  ++ +E+
Sbjct: 336 KWELKGVPIRFEIGPREAENGEVVVSFRDERKKFSVTFDEI 376



 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 16/196 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F     E  + AEI           I    KG+Y WLP G K    V A +RE  +    
Sbjct: 14  FSEWYHEVIQQAEIMD---------IRYPVKGLYVWLPFGFKIRQLVYAKLRELLD-RDH 63

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSH 121
            E+  PTL   D L  ES     +  E+  +        D  +   PT E  M  +F+  
Sbjct: 64  QEVYFPTLIPEDMLMKESKHIKGFEDEVYWVTHGGLEPLDVKLALRPTSETAMYPMFKLW 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVS 180
           I+S+ +LP   YQI   FR E +    ++R RE    K+A++   T E ++    +    
Sbjct: 124 IRSHADLPLKVYQIVNVFRYETKHTRPLIRLREVTSFKEAHTVHRTYEEAEEQVRQAVKL 183

Query: 181 YLRIFHRLGLKSIPMR 196
           Y   +  L +  +  R
Sbjct: 184 YKEFYDFLAIPYLVFR 199


>gi|169607863|ref|XP_001797351.1| hypothetical protein SNOG_06993 [Phaeosphaeria nodorum SN15]
 gi|111064524|gb|EAT85644.1| hypothetical protein SNOG_06993 [Phaeosphaeria nodorum SN15]
          Length = 373

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 7/181 (3%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRV 324
                    K   A+ IEV H F+ GT+YS P+ A     DGK    VQMG +GIG  R+
Sbjct: 197 HACPKCETGKLDVAKAIEVAHTFHLGTRYSDPLGAIVSMPDGKTREAVQMGCHGIGVSRL 256

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + A+     D KG+ WP  +AP++ +++     ++      E++Y  L   G D   DD 
Sbjct: 257 IGAIASLLSDSKGLNWPRVMAPYEAAILVAPQIEEGG---AERVYDALD--GVDAVLDDR 311

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G+ +G +   ADL+G+P+ V++G  +     VE++ R   +++D+ L+E+ +  S    
Sbjct: 312 EGKSLGWKLRDADLIGYPVVVVMGRSWKEKGVVEVQCRRLDVKKDVGLDELKSEVSGLLE 371

Query: 444 N 444
            
Sbjct: 372 Q 372



 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 37/78 (47%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD  P  +  +Y  +  +Y  IF  L L  +   A+SG +GG LSHE+  ++  
Sbjct: 1   MKDLYTFDSNPSAALETYEAVRSAYTAIFDALKLPYLVADADSGNMGGKLSHEYHFVSPK 60

Query: 217 GETQVFCSKDFMDFPIPS 234
           GE  V+            
Sbjct: 61  GEDNVWSCNTCTYIANEE 78


>gi|1711654|sp|P52833|SYT_PSESY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1171431|gb|AAB05013.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae]
          Length = 227

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 39/257 (15%)

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            I ++  + P     S E    A++       S        P E   +   I  +     
Sbjct: 1   DIELKLSTRPEKRVGSDELWDRAESALASALDSAGQPYDLQPGEGAFYGPKIEFSL---- 56

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-K 308
                                  K    R  + G        ++LP  +SA +   D  +
Sbjct: 57  -----------------------KDCLGRVWQCGT---LQLDFNLPIRLSAEYVSEDNSR 90

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            + V +    +G+      ++   ++G    W   +AP +  ++NI        D   ++
Sbjct: 91  KNPVMLHRAILGSFERFIGILIEHYEGAFPAW---LAPTQAVIMNITDK---QADFALEV 144

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L++ G     D   E+IG +     LL  P  +++G + V    V ++ R       
Sbjct: 145 EKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREGADLGS 204

Query: 429 MSLEEVINYASHRFSNN 445
           M + +   + +   S  
Sbjct: 205 MPVAQFAEFLAQAVSRR 221


>gi|239994811|ref|ZP_04715335.1| prolyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 131

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 78/131 (59%), Gaps = 1/131 (0%)

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYA 370
           + MG YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +  H     ++A E +Y 
Sbjct: 1   LTMGCYGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAAEALYE 60

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ + 
Sbjct: 61  ELVALGVEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQLLD 120

Query: 431 LEEVINYASHR 441
           +    ++ +  
Sbjct: 121 ISAAKDFVAAL 131


>gi|281201813|gb|EFA76021.1| prolyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 552

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 5/171 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R I+       G  +S      F+  +         S+G+   R +  +I    D KG++
Sbjct: 270 RAIQAATSHCLGQNFSKMFGIEFEDENNAKALAWQNSWGLT-TRTIGVMIMVHGDDKGLV 328

Query: 340 WPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  +AP ++ ++ +   D    +     +++  RL + G     D+        ++   
Sbjct: 329 LPPRIAPIQVVVVPLYFKDFDSAILDKKADEVVQRLKEAGIRAHLDNRTNYNPRQKYIHW 388

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +L G P++V VG K +    V    R  G++E ++  ++I  A     N +
Sbjct: 389 ELKGVPIRVEVGPKDLEKDVVMFCRRDNGVKESVANADLITTAKSTLDNIQ 439


>gi|171185199|ref|YP_001794118.1| threonyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|229558458|sp|B1YD09|SYT_THENV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170934411|gb|ACB39672.1| Threonyl-tRNA synthetase editing domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 609

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 127/383 (33%), Gaps = 64/383 (16%)

Query: 92  EMLRLADR-----------------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            M +L++R                 +D  +I           + +  + SYR LPF   +
Sbjct: 252 NMFKLSERAIESHARLFGERLYIVESDTDLILRYAACFQQFAMVKDWVISYRQLPFGMLE 311

Query: 135 IQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +   +R E       + R R F M D + F      +     ++  +  R   +LG   +
Sbjct: 312 VADSYRLEQPGETVLLFRLRRFYMPDLHIFTKDLAEAMEVTFRLHEAIFREIGKLGRTYV 371

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +         +++ +F         ++   +                      +V    
Sbjct: 372 SLY--------NVTEDFYKAHRQYLVELARRE------------------GKPILVRVLP 405

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                        + D L   + ++   I+VG+   FG KY           + +  Y  
Sbjct: 406 GQKYYWVLNVEFHIIDELGRPREIATFQIDVGNAQRFGIKY--------VDENNQTRYPV 457

Query: 314 MGSYGI--GAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +    I     R + AV ++      +GK    P  ++P ++ +I I   +        +
Sbjct: 458 IIHTAILGSVERYLYAVFDTLARAEKEGKAPRLPTWLSPVQVRIIPITRDN---LKYAVE 514

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +    G  V  DD  E +  +   A++   P   +VGSK  ++  V ++ R  G + 
Sbjct: 515 VADKFEAEGIRVDVDDRDETLSKRIRDAEVAWVPYICVVGSKEEAEGVVSVRERGGG-QY 573

Query: 428 DMSLEEVINYASHRFSN--NRPV 448
            +  E++I           NRP+
Sbjct: 574 RVKPEDLIKKIREDVRGYPNRPL 596


>gi|56295619|emb|CAH04860.1| partial threonyl-tRNA synthetase (HrrS) [uncultured archaeon]
          Length = 478

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 148/436 (33%), Gaps = 58/436 (13%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSAD--- 78
           H+L+   G       G + + P G      ++    E   NR  A+++  P L + D   
Sbjct: 78  HELV---GYEPSSDSGNFRFYPKGYLIFQLLHDWANEIAVNRFKALQIDSPLLYAWDDPQ 134

Query: 79  LWVESG--RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +  ++G      Y    +R  D  D+  I     +  +  I +    SYRNLP   Y+  
Sbjct: 135 IREQAGTFHERHYS---VRPPDS-DREFILRFAGDFGLFKIMKDATISYRNLPLRMYEFS 190

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E      G+ R R F M D + F    E     Y +++ +Y  +    G++   +
Sbjct: 191 KSFRYERSGELSGLKRLRAFHMPDIHCFCRDMEEGWTEYQELYRNYSDLADASGVEYAIV 250

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                                     F   +       S   D     +  + +E  +  
Sbjct: 251 --------------------------FRIVESFYNENRSRIVDLVKYSNQPAFIEVLSEA 284

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
               +  +  +  DS     ++S   ++V        K +      +   DGK     + 
Sbjct: 285 KHYWAVKNEFQGVDSTRGCIQLSTVQLDV--------KDAQVYGIDYTDRDGKKKGCIIC 336

Query: 316 SYGIGAMRVV-AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              IG++     +++E +   +    P  ++P ++ +I +    +   + C      L  
Sbjct: 337 HSSIGSIERWYYSLLEEALKKEQPTLPVWLSPTQVRIIPV---SEKQLEYCR----YLDI 389

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G     DD  E +  + A A     P   +VG +      + +  R TG R  M+ EE+
Sbjct: 390 DGVRYDVDDSDETLAKKIAKASTEWIPYVAVVGDREAESGVLSVSIRETGKRVTMTREEL 449

Query: 435 INYASHRFSNN--RPV 448
                   +    RP+
Sbjct: 450 AQEVRRHCAGRPYRPL 465


>gi|18312849|ref|NP_559516.1| threonyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|22654124|sp|Q8ZWK4|SYT_PYRAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18160337|gb|AAL63698.1| threonyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 608

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 124/364 (34%), Gaps = 47/364 (12%)

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
               +G+ +  +    D  +I           + +  + SY++LPF   +I   +R E  
Sbjct: 263 HARLFGERLYIVES--DTDLILRYAACFQQFAMAKDWVISYKHLPFGMLEIADSYRHEQP 320

Query: 145 P-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                + R R F M D + F    + +     K+     R   +LG   + +   +   G
Sbjct: 321 GETVLLFRLRRFYMPDLHIFTKDLKEAMEVTYKLHEVIFREIGKLGRTYVSLYNVT--EG 378

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              +H   ++    E      K  +   +P +                            
Sbjct: 379 FYKNHRDYLV----ELARREGKPILVRVLPGQKY--------------------YWVLNV 414

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GA 321
              + D L   + ++   I+VG+   FG KY           + +  Y  +    I    
Sbjct: 415 EFHIVDELGRPREIATFQIDVGNAQRFGIKY--------VDENNQIKYPVIIHTAILGSV 466

Query: 322 MRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            R + AV ++      +GK    P  ++P ++ +I +   +         I   L   G 
Sbjct: 467 ERYLYAVFDTMAKMEKEGKVPRLPTWLSPVQVRVIPVSKEN---LKYAISIADVLEAEGI 523

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E +  +   A+    P  V+VGSK  ++  + ++ R  G +  + LEE++  
Sbjct: 524 RVDIDDREETLSKKIRDAETSWIPYIVVVGSKEEAEGVIAVRERGGG-QYKIRLEELVKK 582

Query: 438 ASHR 441
               
Sbjct: 583 LKDE 586


>gi|320160257|ref|YP_004173481.1| putative prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994110|dbj|BAJ62881.1| putative prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 545

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 76/177 (42%)

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      RG+ V     F + +       +   +G+   V M  + +   R  A +
Sbjct: 368 CPECREPLSETRGLTVARSIRFSSDFIRDRGLNYFDENGQSRPVWMEIHTLNLTRTFACL 427

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E  HD  G+I P   +PF++ L+ +   +     A  ++  +L ++  DV  DD  E  
Sbjct: 428 AELRHDNYGLILPPQASPFEVHLVVLPGKENGVASALPEVLKQLEQMNLDVLVDDRSESP 487

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G +F  ADL+G P+++ +  + +    +E++ R    R+ + LE++ ++     S  
Sbjct: 488 GVKFNDADLIGVPVRLTLSERSLQQGGIEVRKRWESERQTIPLEDLSDWIRKSLSQR 544



 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 30/225 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++ F    ++ P D E    + ++R G IH  + G     PLG +AL+ +     EE  
Sbjct: 7   FTQLFTQTRRQAPADLERPGQQFLVRAGYIHPVAGGTPFLPPLGTRALNRMRKTFLEEIK 66

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G +E+ +P          SG             +R D A +       V        +
Sbjct: 67  ALGGMEIHLPP---------SG-------------ERADLAHLPLLDFLSVH-------L 97

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +S+R LP  ++ +  + ++  +   G++ +R   + +  S        + +   +  + L
Sbjct: 98  RSHRQLPVLWFSLNQRPQETPQRGGGLLSARSQTVLEIISLHREESELERTSADLAGTLL 157

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                L L  +    +    G      +++  + GE ++   ++ 
Sbjct: 158 GFLRGLSLPLVGGE-DLPFAGLQTGQAWMIPLEIGEERLLICEEC 201


>gi|330861019|emb|CBX71291.1| hypothetical protein YEW_JY42990 [Yersinia enterocolitica W22703]
          Length = 195

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 12/174 (6%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLP--MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIES 331
                R  + G +      +SLP  +SA++ G +      V +    +G+M     ++  
Sbjct: 24  HDCLDRAWQCGTV---QLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSMERFIGILTE 80

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            + G    W   +AP ++ ++NI        D  +++  +L   G     D   E+IG +
Sbjct: 81  EYAGFFPTW---LAPVQVVVMNIT---DSQSDYVQQVTKKLQDAGIRAKADLRNEKIGFK 134

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                L   P  ++ G K V   K+ ++ R       + +  V++       + 
Sbjct: 135 IREHTLRRVPYMLVCGDKEVESGKIAVRTRRGKDLGSLDVNVVVDQLLAEIRSR 188


>gi|269926770|ref|YP_003323393.1| prolyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790430|gb|ACZ42571.1| prolyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 483

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 6/178 (3%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++      F   ++     TF   DG+  Y    S+G+ + R +  +I    D 
Sbjct: 223 MGDGRALQSATSHDFADHFAKAFDITFLDKDGERKYGYTTSWGL-STRTIGGIIMVHGDD 281

Query: 336 KGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQ 391
            G+I P  VAP ++ ++ I   +   Q   +  ++I   L      +  D   E+  G +
Sbjct: 282 SGLIIPPKVAPIQVVVVPIWRSEEDKQKVLEHIDRIKEVLGDS-FRLHIDLSEEKTPGWK 340

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           F   +L G P+++ VG + V++S V +  R    +  + L +++       ++ +  L
Sbjct: 341 FNEWELKGVPVRLEVGPRDVANSAVVLVRRDNRDKSQVPLNDLVVRLQQTLADIQQSL 398



 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 106/336 (31%), Gaps = 41/336 (12%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +RS+ F     +    A++A +  +           G+  + P G    +N+  ++    
Sbjct: 14  KRSEDFAAWYNDVVLGAQLADYSPVR----------GMMVYRPYGYAIWENIQKLLDARF 63

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTD 116
             TG +    P L    L   E+   + +  ++  +     +  ++ +   PT E ++  
Sbjct: 64  KATGVVNAYFPLLIPESLLRKEAEHVEGFNPQVAWVTHGGNEELEERLAVRPTSEAIIMQ 123

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           ++   ++SYR+LP    Q     R EL  R   +R+ EFL ++ ++   + E +      
Sbjct: 124 MYSKWVQSYRDLPILINQWNSVVRWELHTRL-FLRTAEFLWQEGHTLHASAEEATERTLL 182

Query: 177 MFVSYLRIF-HRLGLKSIPMR--------------------AESGPIGGDLSHEFIVLAD 215
           M   Y       L +  IP R                     +   +    SH+F     
Sbjct: 183 MLEVYRSFLEEDLAIPVIPGRKTPSERFPGAAETYTVEALMGDGRALQSATSHDFADHFA 242

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                 F  KD       + +           I+                     +P  +
Sbjct: 243 KAFDITFLDKDGERKYGYTTSWGLSTRTIGGIIMVHGDDSGLIIPPKVAPIQVVVVPIWR 302

Query: 276 RVSARGIEVGHIFY----FGTKYSLPMSATFKGADG 307
               +   + HI       G  + L +  + +   G
Sbjct: 303 SEEDKQKVLEHIDRIKEVLGDSFRLHIDLSEEKTPG 338


>gi|91229885|ref|ZP_01262956.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91187354|gb|EAS73721.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 208

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 12/173 (6%)

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSH 333
              R  + G +      ++LP  + AT+ G + +    V +    +G++     ++   +
Sbjct: 40  CLDRAWQCGTV---QLDFNLPGRLGATYVGENNERLVPVMIHRAILGSLERFIGILIEEY 96

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G    W   +AP +  L+NI           ++I  +L K G     D   E+IG +  
Sbjct: 97  AGFFPTW---LAPEQAVLMNITDKQSG---YVQEIVQKLQKSGIRAKADLRNEKIGFKIR 150

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              L   P  ++VG + +   ++ ++ R         +++ I Y     S+ +
Sbjct: 151 EHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISSRK 203


>gi|295667908|ref|XP_002794503.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226285919|gb|EEH41485.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 589

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 33/198 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G++  LPLG +  + +  +I +                                   R 
Sbjct: 55  SGVFHLLPLGLRVQEKLERLIDKHM---------------------------------RT 81

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            DR +   +  PTHEE +T +  S + SYR+LP   YQ   K+RDE RPR G++R REF+
Sbjct: 82  LDRKEARFLLAPTHEEEITSLVESSVSSYRDLPLRLYQFGRKYRDEPRPRQGLLRGREFM 141

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD + E +  +YN +  +Y+R+F+ L L  I   A+SG +GG LSHEF +    
Sbjct: 142 MKDLYTFDYSAEKAIETYNAVKEAYIRLFNELKLPYIVAAADSGNMGGSLSHEFHLPNSK 201

Query: 217 GETQVFCSKDFMDFPIPS 234
           GE  +             
Sbjct: 202 GEDTIVSCSSCGHVYNEE 219



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 27/192 (14%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------------KGAD 306
                  EN   +   IE+ H F+ GT+YS  ++A+                    + + 
Sbjct: 391 DRCSKCGENSVETHTAIELAHTFHLGTRYSEVLNASVAIPSSILRGSLTTERTALAQSSR 450

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                ++MG +GIG  R++AAV ++  D KG+ WP  ++PF + +I     D+      E
Sbjct: 451 TVSVPLEMGCHGIGVSRMIAAVADTLADPKGLNWPRVISPFDVIII----SDRELEKEAE 506

Query: 367 KIYARL---SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
           ++Y  L    K   D   DD  + +  +   ADL+G+P+ +++G  +  D+K+EI+  RL
Sbjct: 507 QVYDTLMESQKADVDAIIDDREKSLTWKLRDADLIGYPVIIVIGKSWKRDNKLEIQCRRL 566

Query: 423 TGIREDMSLEEV 434
              RE +SL+++
Sbjct: 567 ENFRETVSLQDL 578


>gi|154335629|ref|XP_001564053.1| bifunctional aminoacyl-trna synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061084|emb|CAM38105.1| putative prolyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 719

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/418 (13%), Positives = 123/418 (29%), Gaps = 65/418 (15%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           + +  M+  +   G Y   P        V   +     R G  +   P   S   L  E 
Sbjct: 229 ITKAEMVEYYDVSGCYIIRPWAYYVWKCVQRFLGGRIERLGVEDCYFPMFVSRSCLEREK 288

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I+S+R+LP          
Sbjct: 289 DHIEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVI 348

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       +R+REFL ++ +      E        +   Y  ++ +  L ++P+    
Sbjct: 349 RWEFSHPTPFIRTREFLWQEGHCAWAKAEDCAKEVLDILECYAAVYEQ--LLAVPV---- 402

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                       V     E + F    +           F + +                
Sbjct: 403 ------------VRGRKTEKEKFAGGSYTTTV-----ETFIEAVGRGCQGATSHNLGQNF 445

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             + + +  D     + +        + +   T+    M        G     ++ S  +
Sbjct: 446 GKMFDIRFQDPENNEQTLIPWQ----NSWGLSTRVIGVMIMVHGDNRGMVMPPRVASTQV 501

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA----CEKIYARLSKV 375
                                        + +   K   +  R A    C ++   L + 
Sbjct: 502 II---------------------------VPVGITKDTTEEARQALLASCRQLEGELCEG 534

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           G     D       G +F   ++ G PL+V +G + +++  + +  R +  ++ ++  
Sbjct: 535 GVRAKCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLVVAVRHSCAKQSLTWN 592


>gi|229030088|ref|ZP_04186151.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228731210|gb|EEL82129.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 236

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 87/267 (32%), Gaps = 35/267 (13%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P       +    A+     V  S D+       +     
Sbjct: 4   IDYVYKTFGFEY-EVELSTRPEDSMGDDKLWEQAEASLENVLHSLDYKYRLNEGDG---- 58

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A      +  + D+L  + +     ++    F    K+      
Sbjct: 59  ----------------AFYGPKIDFHIKDALNRSHQCGTIQLD----FQMPEKF----DL 94

Query: 301 TFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +      K   V +    +G++    A++     G   ++P  VAP ++ +I +   + 
Sbjct: 95  NYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGG---VFPAWVAPVQVKVIPVS--NA 149

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V     E +  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++
Sbjct: 150 VHVQYAEAVAEKLAQAGVRVERDMREEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVR 209

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L   +       +N +
Sbjct: 210 KYGEEKSEVVELNGFVESMKEEINNRK 236


>gi|218884527|ref|YP_002428909.1| threonyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218766143|gb|ACL11542.1| threonyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 614

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 120/351 (34%), Gaps = 44/351 (12%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSREFLMK 158
           ++   I           + R  + SY++LPF  +++   +R E R    +  R R+F M 
Sbjct: 278 DEDRFILRYAACHQQFAMLRDWVISYKDLPFGVFEVADSYRLEQRGELALCFRLRKFYMP 337

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D +        +     ++                 +  E+G  G      + +  +  E
Sbjct: 338 DLHILTRNIGEAIDVSMRVQA--------------KIHEEAGKAGRSYVALYNITDEFLE 383

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           +  +F        ++    +            + D+L   + ++
Sbjct: 384 K------------YRDKLVEFVKREKYPVLLAVIPSGIYYWVLNVEYHIIDNLKRPREIA 431

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIE----SS 332
              I+VG+    G ++++     +    G+ H+  +    +  G  R +  V++      
Sbjct: 432 TFQIDVGN----GRRFNIA----YVDEKGEKHHPVIIHTALLGGVERYIYMVLDTGALIE 483

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             G+    P  ++P ++ ++ +    +   +   KI   +   G  V  DD  E +G + 
Sbjct: 484 ASGQTPYIPTWMSPVQVRIVPV---SKEYNEHAFKIAGEILSHGFRVDVDDRDETLGKKI 540

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             A     P  ++VG + V+   + I+ R +  +  M LEE I        
Sbjct: 541 RDAGKEWIPYIIVVGEREVNTGTINIRVRRSNDQRVMKLEEFIKLLEEEVK 591


>gi|294496278|ref|YP_003542771.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase
           [Methanohalophilus mahii DSM 5219]
 gi|292667277|gb|ADE37126.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase
           [Methanohalophilus mahii DSM 5219]
          Length = 631

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 142/437 (32%), Gaps = 60/437 (13%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R  +         G   + P G+     +   + +  +R GA+E+  P +   +  
Sbjct: 214 ELMRRLEIADYEPGSDSGNMRYYPKGRLIKSLLERYVLDSSSREGAMEVETPLMYDMNHP 273

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +         + + + M            +      S+ NLP    ++  
Sbjct: 274 TLKKYLDRFPARQ----YSIESDKRHMFLRFAACFGQFLMSHDMTISHHNLPMKMVELTR 329

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++     + +   + + +   + +   +G+     
Sbjct: 330 YSFRKEQRGELVGLRRLRAFTMPDMHTMCGDMDQAVEQFGRQYQMSIDVLKDVGIDVSDY 389

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 +  D   E                           T     ++   +VE W   
Sbjct: 390 EVAIR-LTRDFYEE----------------------NKDFITALAKKVNKPVLVEMWEKR 426

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-- 313
           +            D+L +   +S   I+V +               +    G+       
Sbjct: 427 FFYFVLKFEFNFVDALKKASALSTVQIDVENAER--------YDIKYIDQAGEAKRPVVL 478

Query: 314 MGSYGIGAMRVVAAVIESSHD----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             S      R + +++E +      G+  + P  ++P ++ +I I    +   +  E++ 
Sbjct: 479 HCSPSGAIERCIYSLLEKASMKAEGGEVPMLPVWLSPTQVRVIPIA---ERHMEFAEEVA 535

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---- 425
           +R+    C V  DD  E +G +   A     P  V+VG +     KV +  R        
Sbjct: 536 SRIQ---CRVDIDDREETVGKKIRNAGQEWVPYVVVVGDREAESGKVNVTVREESKPKKP 592

Query: 426 -REDMSLEEVINYASHR 441
            + +MS++E+ +     
Sbjct: 593 SKVEMSVDELNSRILKE 609


>gi|148656401|ref|YP_001276606.1| proline--tRNA ligase [Roseiflexus sp. RS-1]
 gi|148568511|gb|ABQ90656.1| Proline--tRNA ligase [Roseiflexus sp. RS-1]
          Length = 571

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G  +G    +G +      ATF   +G    + M  + I   RV+   +E   D  GI+W
Sbjct: 408 GFIIGRDLRYGARSVQVSGATFLDREGVVRPITMSLFSIALERVLLVAVEQHCDQSGIVW 467

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +APF + L+ +   D   R A + +Y  L+  G  V +DD  E  G +F  ADL+G 
Sbjct: 468 SPEIAPFHVHLVRLGKQDAT-RQAADALYDELTAAGIAVLYDDRDETAGVKFNDADLIGA 526

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           PL++++G +F+SD  VE+K R +G+       E++      
Sbjct: 527 PLRLVIGDRFLSDGLVEVKQRASGVIAKTPQSEIVAVVRAL 567



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 5/232 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  F   L+++P +    + +LM+R G++   S G  + LP+G +AL  +  I+REE
Sbjct: 1   MRMTTLFGRTLRQSPSEINHPTLRLMVRAGLVR-LSSGALTLLPVGTRALRRIEMIVREE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ +P  +S           +    +L   D+  +++   PT E  +  +  +
Sbjct: 60  LTRIGLQEVYLPLFRSGAPLDPLFSSLASASSILHCTDQFGRSLSILPTDEAWIASLAAT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQ++  +  + R  +     R  +    Y+ D +    + S   +  +
Sbjct: 120 EIASYRQLPVLLYQVRPTYCGDCRSSW----LRAGVTAIIYALDHSDADVQESSALVRQA 175

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           + R+F R+ ++  P+ A   P+ GD +  ++ L++ G+  +          +
Sbjct: 176 FTRLFERINVQVAPVEAGRDPVSGDEAFAYVALSEYGDVDLMRCDACGYAAL 227


>gi|119873200|ref|YP_931207.1| threonyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|166225488|sp|A1RV82|SYT_PYRIL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119674608|gb|ABL88864.1| Anticodon-binding domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 609

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 131/422 (31%), Gaps = 51/422 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G   + P     ++ V           G     +       L           +G+ +  
Sbjct: 215 GHMRYAPEATIMIELVEDYAYMVAKSLGIPVFKIRGTNMFKLSETAIESHARLFGERLYV 274

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSRE 154
           +    D  +I           + +  + SY++LPF   +I   +R E       + R R 
Sbjct: 275 VES--DTDLILRYAACFQQFAMVKDWVISYKHLPFGVIEIADSYRHEQPGETVLLFRLRR 332

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F      +     K+     R   +LG   + +         +++ EF    
Sbjct: 333 FFMPDLHIFTRDMAEAIDISFKLHEVIFREIEKLGRTYVSLY--------NVTEEFY--- 381

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                              +   +         +V                 + D L   
Sbjct: 382 ---------------KEYKNYLIELAKREGKPILVRILPGQKYYWVLNVEFHIIDELGRP 426

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESS 332
           + ++   I++G+   FG KY           + +  Y  +    I     R +  V ++ 
Sbjct: 427 REIATFQIDIGNAKRFGIKY--------VDENNQVRYPVIIHTAILGSVERYLYVVFDTM 478

Query: 333 H----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                 GK    P  ++P ++ +I I   +        +I  +L   G  V  DD  E +
Sbjct: 479 AKAEKAGKIPRLPTWLSPVQVRIIPITRDN---LKYAVEIADKLETEGIRVDIDDRDETL 535

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--NR 446
             +   A++   P   +VGSK  ++  + ++ R  G  +    EE+I           NR
Sbjct: 536 SKKIRDAEVSWIPYICVVGSKEETEGVLSVRERGGGQYKTTP-EELIKKIKEETRGYPNR 594

Query: 447 PV 448
           P+
Sbjct: 595 PL 596


>gi|147920005|ref|YP_686240.1| threonyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121683020|sp|Q0W3X9|SYT_UNCMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110621636|emb|CAJ36914.1| threonyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 641

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 142/449 (31%), Gaps = 52/449 (11%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            + ++   D E    +LM R  +         G   W P G+   + +   +  E  + G
Sbjct: 204 EMAKKRAVDREPPHVELMRRLELADYEPGSDPGNMRWYPKGRAMKNMLEQFVLSEAAKKG 263

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+E+  P +   +        D +      +   + K +            +      SY
Sbjct: 264 AMEVETPIMYDMEHPTLKKYLDRFPARQYTVIA-DKKNLFLRFAACFGQFLMNHDMTISY 322

Query: 126 RNLPFTFYQIQ-LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           RNLP    ++    FR E R    G+ R R F M D ++     +G+   +   +   + 
Sbjct: 323 RNLPLKMIELTRYSFRKEQRGELVGLRRLRAFTMPDMHTLCTDMDGAIKEFGDQYEMCIN 382

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
               +G+                           E  +  +KDF +   P          
Sbjct: 383 TLDTIGIDIKTDY---------------------EVAIRFTKDFYNNNTP-FIQSLVKRA 420

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               IVE W   +            DSL +   +S   I+V +               + 
Sbjct: 421 GKPVIVEMWEERFFYFVLKFEFNYIDSLNKASALSTVQIDVENAER--------YDINYV 472

Query: 304 GADGKDHYVQM--GSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAH 357
             +G      +   S      R +  ++E     S  G   + P  ++P ++ ++ I   
Sbjct: 473 DQNGNRQRPIILHCSPSGAIERCIYGLLEKEAMESEKGAVPMLPVWLSPTQVRIVTI--- 529

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      E +  R+      V  DD  E +G +   A     P  V +G   ++  K+ 
Sbjct: 530 SEKHVPFAEALADRMCN--VRVDIDDREETVGKKIRDAGKEWIPYVVTIGDAEMNGDKIP 587

Query: 418 IKHRLTGI-----REDMSLEEVINYASHR 441
           +  R         + +M++EE++      
Sbjct: 588 VVVRAESQQNKPAKVEMTVEELVERIHKE 616


>gi|108803928|ref|YP_643865.1| prolyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|123069165|sp|Q1AX25|SYP_RUBXD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108765171|gb|ABG04053.1| prolyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 476

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 4/157 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++       G  ++     TF   + +  +    S+G  + R + A+I    D 
Sbjct: 219 MGDGRALQAATSHDLGQNFARAFDITFLDENQERVHPYQTSWGF-STRTIGALILVHGDD 277

Query: 336 KGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQF 392
           +G+  P  +AP +  ++ I    +    R   E ++  L++ G     D D     G +F
Sbjct: 278 RGLRLPPKLAPTQAVVVPIWRGKNKGEVRREAEALHRELAEAGLRAEADLDEEHSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
              +L G P++V +G K +   +  +  R TG +E +
Sbjct: 338 NEHELRGVPVRVELGPKDIEKGQAVLVRRDTGEKEFV 374



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 20/190 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L    E  R A++A +  +  T  I           P G    + + A +      
Sbjct: 16  SRWYL----ELVRMAKLADYGPVRGTFAIR----------PYGFAIWERIQADLDARFKA 61

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
           TG +    P L     L  E+   + +  E   +     D  ++ +   PT E ++ D +
Sbjct: 62  TGHVNAYFPLLIPESYLTKEAEHVEGFAPECAWVTVGGDDELEERLAIRPTSESIICDFY 121

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  I SYR+LP    Q     R E+      +R+ EFL ++ ++   T E ++    +M 
Sbjct: 122 RKWIHSYRDLPVLINQWCNVLRWEM-VTRPFLRTAEFLWQEGHTVHATAEEAREEALRML 180

Query: 179 VSYLRIFHRL 188
             Y   F+ +
Sbjct: 181 NVYRDCFYEV 190


>gi|41614972|ref|NP_963470.1| threonyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M]
 gi|73919808|sp|Q74MP3|SYT_NANEQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|40068696|gb|AAR39031.1| NEQ177 [Nanoarchaeum equitans Kin4-M]
          Length = 633

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 127/360 (35%), Gaps = 40/360 (11%)

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
               +G+ M  +   +    +           I +    SY+N+PF   ++   +R E  
Sbjct: 289 HAKLFGERMYEVQS-DKSVFVLRYAACFQQFAIAKDLTLSYKNVPFGMLEVADSYRFEQP 347

Query: 145 PRFGV-MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               +  R R+F M D + F    + +   +  M    +    ++G              
Sbjct: 348 GEVVLAFRLRKFYMPDLHVFTKDLDEAVEQFLNMHKKIMEEIKKIGRDY----------- 396

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E ++   + E          +         + D+     +     +         
Sbjct: 397 -----ELLINVASFED--------YEKYKYIIEQIYKDVKKPLLLAIYPKSDQRYWIINI 443

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
              + D L   + +    I++ +   FG KY           DG + H + + +  +G++
Sbjct: 444 EYHIIDVLGRPREIGTTQIDLHNSKRFGIKY--------IDKDGSEKHVIILHNAILGSI 495

Query: 323 RV-VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
              + A+ +++   +  + P  ++P ++ +I +    +   +  E+I   L      V  
Sbjct: 496 ERYIYALFDTALRKEKPVLPFWISPVQVRVIPV---SEKYLEYAEQIAKELESK-FRVEL 551

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E +  +   A+ L  P  +++G K + ++K+ ++ R      + SLE++I+     
Sbjct: 552 DDRDETLNKKIKDAESLWVPYIIVIGEKEIKNNKITVRDRYENKVYETSLEDLISKMEEL 611


>gi|308811795|ref|XP_003083205.1| putative prolyl-tRNA synthetase [Oryza sativa (ISS) [Ostreococcus
           tauri]
 gi|116055084|emb|CAL57480.1| putative prolyl-tRNA synthetase [Oryza sativa (ISS) [Ostreococcus
           tauri]
          Length = 553

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G     G  ++     TF    G+  YV   S+G+ + R+V  +I +  D
Sbjct: 286 MMGDKKALQAGTSHNLGDNFAKAFDTTFLNDQGETKYVHQSSWGV-STRLVGGIIMTHGD 344

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWD-DMGEQIGS 390
             G+  P  +AP ++ ++ I   D    +     + I + L   G     D D  +  G 
Sbjct: 345 DAGLTLPPKLAPIQVVVVPIWKKDAEKDEVMASVDGIISTLEGAGVRTHLDADQSKSPGW 404

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE 432
           +F   ++ G P+++ VG K V+     I  R      G    +S+E
Sbjct: 405 KFNQYEMKGVPIRIEVGPKDVAKGACVIARRDVPGKEGKEFGVSVE 450



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 16/164 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RRS+ F     +  R+ ++A +     T +I           P G    + +   +    
Sbjct: 78  RRSEDFGRWYLDCVRECQLADYGPARGTMVIR----------PYGYAIWEGIQKYMDARF 127

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTD 116
             TG      P L        E+   + +  E+  +        ++ ++  PT E ++ +
Sbjct: 128 KETGVQNAYFPQLIPYSFITKEASHVEGFSPELALVTKGGGKDLEEPLVVRPTSETIVNN 187

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +    I+SYR+LP    Q     R E+R R   +R+ EFL ++ 
Sbjct: 188 MMSQWIQSYRDLPMLLNQWCNVHRWEMRTR-PFIRTLEFLWQEG 230


>gi|320101395|ref|YP_004176987.1| threonyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319753747|gb|ADV65505.1| threonyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 611

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 123/351 (35%), Gaps = 44/351 (12%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSREFLMK 158
           ++   +           + R  + SY+ +PF  +++   +R E R    +  R R+F M 
Sbjct: 275 DEDRFVLRYAACHQQFAMLRDWVISYKEMPFGAFEVADSYRLEQRGELALCFRLRKFYMP 334

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D +        +     ++                 +  E+G +G      + +  +  E
Sbjct: 335 DLHILTRDINEAIEVSMRVQS--------------KIHEEAGKVGRSYVALYNITDEFLE 380

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           +  +F        ++    +            + D+L   + ++
Sbjct: 381 K------------YRDKLVEFVKREKYPVLLAVIPSGIYYWVLNVEYHIVDNLNRPREIA 428

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIE----SS 332
              I+VG+    G ++    + T+    G+ H+  +    I  G  R +  V++      
Sbjct: 429 TFQIDVGN----GARF----NITYVDEKGEKHHPVIIHTAILGGVERYIYMVLDTAALME 480

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             G+    P  ++P +  +I +    +   +   K+   L+  G  V  DD  E +G + 
Sbjct: 481 AKGQTPYIPTWMSPVQARVIPV---SREFNEHAFKVAGELASRGFRVDVDDRDETLGKKI 537

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             A     P  +++G + V+   + ++ R +  ++ M LEE I+  +    
Sbjct: 538 RDAGREWVPYIIVIGEREVATGTLNVRVRRSNDQKVMRLEEFIDLLNREVE 588


>gi|115969223|ref|XP_001192584.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 185

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 1/146 (0%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     
Sbjct: 1   MRALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCL 60

Query: 107 GPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           GPTHEE +TDI       S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD 
Sbjct: 61  GPTHEEAVTDIVAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDS 120

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLK 191
             EG++ +Y  +  +Y RIF  L L 
Sbjct: 121 NLEGAEETYRSVCEAYQRIFSILDLP 146


>gi|303285936|ref|XP_003062258.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456669|gb|EEH53970.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 828

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++     TF+ A G        S+G    R +   +    D  G
Sbjct: 558 TGRGIQGATSHCLGQNFAKMFDITFENATGGRSMAWQNSWGCT-TRTIGVAVMVHGDDIG 616

Query: 338 IIWPDSVAPFKISLINI------KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           ++ P  VAP +  +I I      K      ++  +K+ A L   G     DD      G 
Sbjct: 617 LVLPPRVAPLQAVVITIPNTKMSKEDTGRMKETGQKMTASLLAAGMRAKLDDRDNYTPGW 676

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           ++   +L G PL+   G + +      +  R    +E + LE++    
Sbjct: 677 KYNHWELKGVPLRCEFGPRDLEAGHCVVVRRDNRAKETVKLEDLPTRL 724



 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 5/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  +TG      P   SA  L  E    + +  E+  
Sbjct: 370 SGCYILRPWAYSMWECIKDFFDAEIKKTGVENCYFPLFVSAARLEAEKDHIEDFAPEVAW 429

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E VM   F + I+S+R+LP    Q     R E +     +R
Sbjct: 430 VTRSGQSDLDIPIAVRPTSETVMYPQFANWIRSHRDLPLKLNQWCNVVRWEFKHPTPFIR 489

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           SREFL ++ ++     + +      +   Y R++  L
Sbjct: 490 SREFLWQEGHTAFTNKKDADAEVRHILELYRRVYEEL 526


>gi|167947531|ref|ZP_02534605.1| prolyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 110

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 80/110 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  ++E P DAE ASHKLMLR GMI + + G+Y+WLPLG + L  V AI+REE
Sbjct: 1   MRTSEFPLQTVKETPADAETASHKLMLRAGMIRKLAAGLYTWLPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
            +R GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GP H
Sbjct: 61  MDRAGALELLMPAVQPAELWQESGRWEQYGPELLRLKDRHQREFCFGPNH 110


>gi|294101290|ref|YP_003553148.1| prolyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616270|gb|ADE56424.1| prolyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 479

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 154/453 (33%), Gaps = 87/453 (19%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L I++     AE+A +  +    +I           P G    +++     +    
Sbjct: 13  SQWYLDIIKV----AELADYAPVRGCMVIR----------PTGYSLWESIQKHFDDAFKE 58

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIF 118
           TG +    P L     L  E+   + +  E   +        ++ ++  PT E V+  ++
Sbjct: 59  TGHVNAYFPVLIPNSFLEKEAEHVEGFSPECAVVTHAGGELLEEPLVVRPTSETVIGHMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              I+S+R+LP    Q     R E RPR   +R+ EFL ++ ++   T E +     KM 
Sbjct: 119 SKWIQSWRDLPILINQWANVMRWEKRPRL-FLRTSEFLWQEGHTAHATEEEAMEETLKML 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             Y RI     + +IP+      +G   + E    A               +   +  +D
Sbjct: 178 EVYRRIMTE--ILAIPVI-----VGEKTAGERFPGA------------VNTYTCEAMMSD 218

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              + +  S         A      N+K                     +   T+    +
Sbjct: 219 KKALQAGTSHFLGQNFSRAFDIQFQNQKGEQEYAWT-----------TSWGVSTRLIGAL 267

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             T    DG                              +I P  VAP +++++ I  +D
Sbjct: 268 IMTHSDNDG------------------------------LILPPRVAPVQVAILPISTND 297

Query: 359 QVCRDA----CEKIYARLSKV-GCD-VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFV 411
            V  +       +   +L ++ G    F D     + G +F      G PL++ +G K +
Sbjct: 298 SVMEEQLLPRALEFSDKLDQMLGGRFTFVDKQFHMRPGDRFFYHLQKGVPLRLELGEKDL 357

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +   V    R TG +ED+  E V         +
Sbjct: 358 AAGTVRAVRRDTGSKEDIPFENVPLRVKALLED 390


>gi|115906275|ref|XP_001189525.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 149

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 1/146 (0%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     
Sbjct: 1   MRALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCL 60

Query: 107 GPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           GPTHEE +TDI       S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD 
Sbjct: 61  GPTHEEAVTDIVAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDS 120

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLK 191
             EG++ +Y  +  +Y RIF  L L 
Sbjct: 121 NLEGAEETYRSVCEAYQRIFSILDLP 146


>gi|219684697|ref|ZP_03539640.1| prolyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219672059|gb|EED29113.1| prolyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 488

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 153/461 (33%), Gaps = 93/461 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFR 119
                           + ESG  ++Y   ML     L    D    + P        I +
Sbjct: 56  ----------------FKESGHENAYFP-MLIPYGFLEKEKDHIEGFSPEF-----AIIK 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                    P              RP                        S+     M+ 
Sbjct: 94  DAGGESLAEPLVL-----------RPT-----------------------SETIIWNMYS 119

Query: 180 SYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +++ +  L LK    +  +R E        + EF+                    I   
Sbjct: 120 KWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDL 179

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F +      +     +     +   +    ++L ++K    + ++     Y G  ++
Sbjct: 180 YKRFMEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFA 235

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I 
Sbjct: 236 KAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPIEIIVIPIF 294

Query: 356 AHDQ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
             +        D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   
Sbjct: 295 KKEDEINKKILDYSDCVVNALKKAEFRVEVDKDVRSSPGFRFSSAEFKGIPIRIEVGIND 354

Query: 411 VSDSKVEIKHRLT--GIREDMSLEEVINYASHRFSNNRPVL 449
           V  + V I  R      +  +SL+ + +       + +  L
Sbjct: 355 VLLNSVTIVRRDKDRKFKYQISLDSLASKVKIELDSMQKDL 395


>gi|325969299|ref|YP_004245491.1| threonyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323708502|gb|ADY01989.1| threonyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 621

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/423 (15%), Positives = 133/423 (31%), Gaps = 50/423 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G   + P     ++ V     +  N  G    ++    +              + + M  
Sbjct: 222 GHMRYGPAATLMMELVEDYAWKLANELGIPVFKIRGTNMFRRGERAIDEHARLFNERMYT 281

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSRE 154
           +    D+ +I           + +  + SYR++P    ++   +R E      +  R R 
Sbjct: 282 IEGDKDE-LIMRYAACFQQFAMIKDWVLSYRDIPIGMLEVADSYRYEQPGETVLCFRLRR 340

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F    + +     K+     R   +LG   + +   +     +     I LA
Sbjct: 341 FYMPDLHIFTKDLKNAMDVALKLHEIIFREVRKLGRDYVSLYNVTKQFYDEHRDYLIELA 400

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                            ++                 + D L   
Sbjct: 401 --------------------------KREGKPMLIRIMPEQKYYWVLNVEFHIVDELRRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIES- 331
           + ++    +VG+   FG KY        +  +G+  Y  +    I     R + A++++ 
Sbjct: 435 REIATFQFDVGNAQRFGIKY--------RDENGEIRYPVIIHTAIIGSVERYIYALLDTA 486

Query: 332 ---SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
                 G+    P  V+P ++ +I I    +       +I +RL      V  DD   E 
Sbjct: 487 AITESKGEIPRLPTWVSPIQVRVIPI---SKEHLTFANEIVSRLEDRMIRVDIDDRFDET 543

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--N 445
           +  +   A+    P  V++G + V   K+ ++ R      +M ++E  +           
Sbjct: 544 LAKRVRDAETFWVPYIVVIGDREVKTGKLSVRVRGVQKPIEMGIDEFTSKIEEEIKGYPR 603

Query: 446 RPV 448
           RP+
Sbjct: 604 RPL 606


>gi|119495835|ref|XP_001264694.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119412856|gb|EAW22797.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 441

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 26/321 (8%)

Query: 144 RPRFGVMRSR--EFLMKDAYSFDLTPEGSKHSYNKMFVSY-----LRIFHRLGLKSIPMR 196
           R R  ++R    +F M++A    +  E + H+   +  +      L + + L      + 
Sbjct: 124 RDRKTLLRGWYPKFTMREANQEPVEREVNSHAVKSIATAAGVDIDLSVENPLEQWVSQVE 183

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           ++ G  G   S E   + D  + Q    K      +  +     D I  + +        
Sbjct: 184 SDKGS-GISGSSERPQVLDLYDAQARVYKRPPLSDLLEKVNRTADEIDYSMLDRFPGTNQ 242

Query: 257 AAT-SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------GADGK 308
           A     V +        +    +   +E+GH F+ GT+YS  + A+         G+  K
Sbjct: 243 ALNLVKVQDGDKCTKCAKGSLKTHTAVELGHTFHLGTRYSEVLQASVMVDRSLSGGSQSK 302

Query: 309 DH--YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           D    +QMG +GIG  R+++AV +S  D KG+ WP ++AP+++ ++  K  +       E
Sbjct: 303 DQLVPLQMGCHGIGVSRMISAVADSLADSKGLNWPRAMAPYEVVVVPGKGLETE----AE 358

Query: 367 KIYARLSKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
           K+Y  L        D   DD  + +G +   ADL+G+P+ V+VG  +     +E++  RL
Sbjct: 359 KVYDSLVSNHTSSIDAILDDRDKPMGWKLGDADLIGYPVIVVVGKGWKKAQTLEVQCRRL 418

Query: 423 TGIREDMSLEEVINYASHRFS 443
             +RED+ L+++ ++      
Sbjct: 419 DNLREDVPLDQLPSFVQSLLE 439



 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD + E +  +YN +  +Y  +F  L +  +   A+SG +GG LSHEF   +  
Sbjct: 1   MKDLYTFDYSVEEALKTYNLVKAAYKNLFDELKIPYLVAAADSGNMGGSLSHEFHFPSSK 60

Query: 217 GETQVFCSKDFMD 229
           GE  V    +   
Sbjct: 61  GEDTVISCSNCDH 73


>gi|312879303|ref|ZP_07739103.1| prolyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310782594|gb|EFQ22992.1| prolyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 501

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/464 (16%), Positives = 150/464 (32%), Gaps = 97/464 (20%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L +++     A +A +  +           G     P G    + +     E   
Sbjct: 34  FSQWYLDVIRV----AGLADYAPVR----------GCMVVRPTGYSIWEVIQKHFDEGFK 79

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG +    P L     L  E+   + +  E   +     +  ++ ++  PT E V+  +
Sbjct: 80  ETGHVNAYFPLLIPHSFLEKEAQHVEGFAPECAVVTHAGGEELEEPLVVRPTSETVIGHM 139

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   ++S+R+LP    Q     R E RPR   +R+ EFL ++ ++   T + +      M
Sbjct: 140 YSKWVQSWRDLPLLINQWCSVMRWEKRPRL-FLRTSEFLWQEGHTAHATRDEAMEETLTM 198

Query: 178 FVSYLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              Y RI    L L  +         G     E    AD                     
Sbjct: 199 LEVYRRIMVEELALPVVA--------GEKSEGERFPGAD--------------------- 229

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKY 294
               +  +  +++    A  A TS    +    +     +     ++      +   T+ 
Sbjct: 230 ----NTFTCEAMMSDKKALQAGTSHFLGQNFAKAFEIAFQDQDGQVQFAWTTSWGVSTRL 285

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              +  T    DG                              ++ P  VAP K++L+ I
Sbjct: 286 IGALIMTHADDDG------------------------------LVLPPHVAPVKVALLPI 315

Query: 355 KAHDQ--------VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
              ++          R+    + ARL +    V  D     + G +F      G PL++ 
Sbjct: 316 STDEERLASDLEPKARELVTALEARLGRR--SVALDTQYHMRPGDRFFSHLQKGVPLRLE 373

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +G +   + +V    R TG + D+  + +           +  L
Sbjct: 374 LGEREWQEGRVRAVRRDTGEKIDLPWDRLAEEVPAILEQIQQNL 417


>gi|327311872|ref|YP_004338769.1| threonyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326948351|gb|AEA13457.1| threonyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 612

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 132/422 (31%), Gaps = 51/422 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G   + P     ++ V     +     G     +       L  +        +G+ +  
Sbjct: 216 GHMRYGPDATIMMELVEDYAFQVARSLGIPIFKIRGTNMFKLSEKPIETHAKLFGERLYI 275

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSRE 154
           +    D   I           + +  + SYRNLPF   +I   +R E       + R R 
Sbjct: 276 V--ETDVDSILRYAACFQQFAMAKDWVISYRNLPFGMLEIADSYRYEQPGETVLLFRLRR 333

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F         +    +  + +IF  +             I  D    + + A
Sbjct: 334 FYMPDLHIFTKN---LNEAIEVTYKLHEKIFEEI-----------RKINRDYVSLYNITA 379

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +                      +         ++                 + D L   
Sbjct: 380 E------------FYKGHKDYLVELAKREGKPILLRILPEQKYYWVLNVEFHIIDELGRP 427

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIE-- 330
           + ++   I+VG+   FG KY           + K  Y  +    I     R + A+ +  
Sbjct: 428 REIATFQIDVGNAMRFGIKY--------IDEENKVKYPVIIHTAILGSVERYIFALFDTA 479

Query: 331 --SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                 G+    P  + P ++ +I +    +  R A + +   L + G  V  DD  E +
Sbjct: 480 ALMEKRGEVPRLPTWITPVQVRIIPVNR--EYLRPASD-LADELERRGIRVDIDDREETL 536

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--NR 446
             +   A+    P  +++G K  S + + ++ R  G +  MS ++++       S    R
Sbjct: 537 SRKIRDAEREWIPYIIVIGQKEASSNMLTVRIRGKG-QVQMSRQDLVEVVEKEISGFPRR 595

Query: 447 PV 448
           P+
Sbjct: 596 PL 597


>gi|225552331|ref|ZP_03773271.1| prolyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371329|gb|EEH00759.1| prolyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 488

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/457 (16%), Positives = 152/457 (33%), Gaps = 85/457 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHVDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEEYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDTLKKAEFRVEIDKDIRNSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRFSNNRPVL 449
            V I  R      +  +SL+ +++         +  L
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVELDLMQKAL 395


>gi|154304091|ref|XP_001552451.1| hypothetical protein BC1G_09681 [Botryotinia fuckeliana B05.10]
 gi|150854316|gb|EDN29508.1| hypothetical protein BC1G_09681 [Botryotinia fuckeliana B05.10]
          Length = 426

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 28/200 (14%)

Query: 268 FDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATFK------------GADGKDH-- 310
            D  P+ +  +    + IE+GH F+ GT+YS PM AT              G +      
Sbjct: 231 GDVCPKCQEPTLKVEKAIELGHTFHLGTRYSKPMEATVTVPSGLVGGNLKAGENEPQQGR 290

Query: 311 ------YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  ++MG +GIG  R+V AV E+  D KG+ WP  +APF+I ++  K  D+     
Sbjct: 291 NDQIQVPMEMGCHGIGVTRMVGAVAETLADEKGLNWPRVMAPFEIVVVPGKGLDED---- 346

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I+  LS    D   DD    IG +   ADL+G+P+ V++G K+  +   E++ R   
Sbjct: 347 ALQIFDTLSAAAMDPVVDDREVSIGWKMKDADLIGYPVIVLLGRKW-KEGLCEVQCRRLD 405

Query: 425 IREDMSLEEVINYASHRFSN 444
           ++ED+ +E++ N+     S 
Sbjct: 406 VKEDIRVEDLKNFVGKLLSQ 425



 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 34/78 (43%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD     +  +Y  +  +Y  +F  L +  +   A+SG IGGDLSHEF      
Sbjct: 1   MKDLYTFDYNSTSALSTYEDVRKAYHNLFDELKIPYLVAEADSGDIGGDLSHEFHFPTKI 60

Query: 217 GETQVFCSKDFMDFPIPS 234
           GE  +             
Sbjct: 61  GEDNIISCSKCNYVANEE 78


>gi|219685452|ref|ZP_03540270.1| proline--tRNA ligase [Borrelia garinii Far04]
 gi|219673008|gb|EED30029.1| proline--tRNA ligase [Borrelia garinii Far04]
          Length = 488

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 153/461 (33%), Gaps = 93/461 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFR 119
                           + E+G  ++Y   ML     L    D    + P        I +
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYGFLEKEKDHIEGFSPEF-----AIIK 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                    P              RP                        S+     M+ 
Sbjct: 94  EAGGESLAEPLIL-----------RPT-----------------------SETIIWNMYS 119

Query: 180 SYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +++ +  L LK    +  +R E        + EF+                    I   
Sbjct: 120 KWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDL 179

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F +      +     +     +   +    ++L ++K    + ++     Y G  ++
Sbjct: 180 YKRFMEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFA 235

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I 
Sbjct: 236 KAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPIEIIVIPIF 294

Query: 356 AHDQ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
             +        D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   
Sbjct: 295 KKEDEINKKILDYSDCVVNALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRIEVGIND 354

Query: 411 VSDSKVEIKHRLT--GIREDMSLEEVINYASHRFSNNRPVL 449
           V  + V I  R      +  +SL+ + +       + +  L
Sbjct: 355 VLLNSVTIVRRDKDRKFKYQISLDSLASKVKIELDSMQKDL 395


>gi|283782412|ref|YP_003373167.1| prolyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283440865|gb|ADB19307.1| prolyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 503

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/441 (15%), Positives = 140/441 (31%), Gaps = 63/441 (14%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           ++ ++R   + + S   G     P G    +NV  ++      TG      P        
Sbjct: 18  YQQVIRAADLAEVSPVRGCMVIKPWGWSIWENVQKVLDGMFKATGHENAYFP-------- 69

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
                       +       +K        E    D F                +    R
Sbjct: 70  ------------LFIPMSFLEK--------EAEHVDGFAKECA-----------VVTHHR 98

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK----SIPMR 196
            E   + G +     L ++      T E    S   M+  +++ +  L +     +  +R
Sbjct: 99  LEP-GKDGKLVPAGPL-EEPLIVRPTSETIIGS---MYAKWVQSYRDLPILINQWANVVR 153

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E        + EF+      E     + +       S+  +     + N +        
Sbjct: 154 WELRTRLFLRTTEFLWQ----EGHTAHATEEEAREETSKMLEVYADFAENFMAMPVIKGE 209

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               +     +     E      + ++ G   + G  ++      F+   GK+ +    S
Sbjct: 210 KTAGERFPGAVQTLSIEAMMQDRKALQAGTSHFLGQNFAKAQEIKFQDQHGKECFAWTTS 269

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLS 373
           +G+ + R++ A+I +  D  G+I P  +AP  I L+ I  +D+         + +   L 
Sbjct: 270 WGV-STRLIGALIMTHSDDDGLIIPPKLAPKHIVLLPIYRNDEERTAVLAYVKSLKVELE 328

Query: 374 KVG-----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
                     V  DD   + G +       G PL+  +G K ++ + V +  R TG +  
Sbjct: 329 SQKYSGESIRVMIDDRDLRGGEKNWQHVKKGVPLRAEIGPKDIAKNGVFLARRDTGEKVG 388

Query: 429 MSLEEVINYASHRFSNNRPVL 449
           +  E+++   + R    +  L
Sbjct: 389 VGREDLVATIADRLDAIQKNL 409


>gi|223888966|ref|ZP_03623557.1| prolyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|223885782|gb|EEF56881.1| prolyl-tRNA synthetase [Borrelia burgdorferi 64b]
          Length = 488

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 150/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|15594747|ref|NP_212536.1| prolyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|13633966|sp|O51363|SYP_BORBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2688299|gb|AAC66767.1| prolyl-tRNA synthetase (proS) [Borrelia burgdorferi B31]
          Length = 488

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 150/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +I+      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLISKVKVEL 388


>gi|216264165|ref|ZP_03436157.1| prolyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215980638|gb|EEC21445.1| prolyl-tRNA synthetase [Borrelia burgdorferi 156a]
          Length = 488

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 150/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMGHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|224533003|ref|ZP_03673610.1| proline--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|225549051|ref|ZP_03770026.1| prolyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225549517|ref|ZP_03770483.1| prolyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|224512063|gb|EEF82457.1| proline--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|225369794|gb|EEG99241.1| prolyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|225370277|gb|EEG99715.1| prolyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 488

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 150/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|221217681|ref|ZP_03589149.1| prolyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|221192358|gb|EEE18577.1| prolyl-tRNA synthetase [Borrelia burgdorferi 72a]
          Length = 488

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 150/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|195942244|ref|ZP_03087626.1| prolyl-tRNA synthetase [Borrelia burgdorferi 80a]
          Length = 488

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 150/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|255081150|ref|XP_002507797.1| bifunctional aminoacyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226523073|gb|ACO69055.1| bifunctional aminoacyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 588

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 8/170 (4%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++      ++  +G    V   S+G    R +   I    D KG
Sbjct: 318 TGRGIQGATSHCLGQNFAKMFQIEYENKNGGRSMVWQNSWGCT-TRTIGVAIMVHGDNKG 376

Query: 338 IIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           ++ P  VAP ++ ++ I          +   D  + +   +   G     DD      G 
Sbjct: 377 LVLPPRVAPLQVVVVTIPNSKLSAEDSKKLNDTAKAMSDGMIDAGLRSKLDDRDNYTPGW 436

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           ++   +L G PL+   G + +      +  R TG +E + L ++   A  
Sbjct: 437 KYNHWELKGVPLRCEFGPRDMEAGHCVVVRRDTGAKETVKLVDLPVRAKE 486



 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWVESGRYDSYGKEMLR 95
            G Y   P      + +     +E  + G      P  + SA L  E    + +  E+  
Sbjct: 130 SGCYILRPWAYSMWEQIKDFFDKEIKKEGVENCYFPLFVSSARLEAEKDHIEDFAPEVAW 189

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E VM  +F + I+S+R+LP    Q     R E +     +R
Sbjct: 190 VTRSGQSELDVPIAVRPTSETVMYPVFANWIRSHRDLPMKLNQWCNVVRWEFKHPTPFIR 249

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           SREFL ++ ++       +      +   Y R++  L
Sbjct: 250 SREFLWQEGHTAFTNKADADKEVRHILDLYRRVYEEL 286


>gi|224533738|ref|ZP_03674326.1| prolyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|224513031|gb|EEF83394.1| prolyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 488

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 150/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|68071553|ref|XP_677690.1| aminoacyl-tRNA synthetase [Plasmodium berghei strain ANKA]
 gi|56497903|emb|CAH98595.1| Bi-functional aminoacyl-tRNA synthetase, putative [Plasmodium
           berghei]
          Length = 324

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S R I+     Y GT ++      F+       +V   S+G    R +  +I    D KG
Sbjct: 48  SGRAIQAATSHYLGTNFAKMFKIEFEDEQENKQFVHQTSWGCT-TRSIGVMIMIHSDNKG 106

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFA 393
           +I P +VA +K  ++ I    + +    + C+ I   L     +  +DD      G +F 
Sbjct: 107 LILPPNVAKYKAVIVPILYKNSDETAIFNYCKDIEKVLKNAQINCIFDDRDLYSPGYKFN 166

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +L G P+++ VG K + ++      R    + ++  E V+
Sbjct: 167 HWELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKESVL 208


>gi|326387775|ref|ZP_08209381.1| prolyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207821|gb|EGD58632.1| prolyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 515

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/481 (16%), Positives = 145/481 (30%), Gaps = 104/481 (21%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +RS+ F    Q    +AE+A       +G+     +G     P G    + +  ++ E  
Sbjct: 13  KRSEDFAQWYQAVIAEAELAE-----ESGV-----RGCMVIKPWGYGIWERIQKLMDERI 62

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRN-----------------DKA 103
              G      P       +  E+   D + KEM  +                     ++ 
Sbjct: 63  KAAGVDNCYFPLFIPLSFFAREADHVDGFAKEMAVVTHHRLIADPERGLIPDPEAKLEEP 122

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           ++  PT E V+       I+S+R+LP    Q     R E+R R   +R+ EFL ++ ++ 
Sbjct: 123 LVVRPTSETVIGAAMARWIQSWRDLPLLTNQWANVVRWEMRTRM-FLRTSEFLWQEGHTA 181

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                 +     +    Y      +   ++P+ A   P                E + F 
Sbjct: 182 HADEADAMTETLRALEMYRSFAEDV--LALPVVAGPKP----------------ENERFP 223

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                 + I +   D   + +  S     T   AA     +++    L            
Sbjct: 224 GAVAT-YSIEAMMQDGKALQAGTSHYLGTTFAEAAGIRYQDKEGQQVLCHTTSWGVSTRM 282

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +G +             T    DG                                    
Sbjct: 283 IGGVI-----------MTHGDDDGLRTP------------------------------PQ 301

Query: 344 VAPFKISLINI---KAHDQVCRDACEKIYARLSKV-----GCDVFWDDMGEQIGSQFAVA 395
           VAP +I ++ +      D+     CE++   L           V  D    +  ++    
Sbjct: 302 VAPHQIVILPMLRDNDGDEALLAYCEELRKALVSQSVFDEKVRVLLDKRPGKATAKRWGW 361

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-------MSLEEVINYASHRFSNNRPV 448
              G PL + +G +   + +V +  R    RED       ++ EE +  A+    + +  
Sbjct: 362 VKKGVPLVLEIGGRDAENGQVSVVRRDRLWREDGKVDFKGIAREEFLATATSELESIQDA 421

Query: 449 L 449
           L
Sbjct: 422 L 422


>gi|312149307|gb|ADQ29378.1| prolyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 488

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 151/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-- 357
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I     
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKGD 298

Query: 358 --DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             ++   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|32399017|emb|CAD98257.1| aminoacyl-tRNA synthetase, probable [Cryptosporidium parvum]
          Length = 688

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 5/174 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++       G  +S      F+   G   Y    S+G+   R +  +I +  D KG++
Sbjct: 413 RAVQAATSHLLGQNFSKMFGVEFEDEKGNKEYAHQTSWGLT-TRAIGVMIMTHGDNKGLV 471

Query: 340 WPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  VAP ++ +I I       +  +  C ++   L K G  V  DD      G ++   
Sbjct: 472 LPPKVAPVQVIIIPIIFKTVITEEQKKICNEVECILKKAGVRVKIDDRSNYTPGWKYNHW 531

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ G  L+  VG + +    V +  R    + D+ + E+ +         +  L
Sbjct: 532 EVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISELESKIPKLLEEFQNRL 585



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++++ MI  +   G Y   P      + + ++  ++  +        P  +    L  
Sbjct: 209 QVIVKSEMIEYYDISGCYILRPWSYFIWETIQSVFDQKIKQHDVQNAYFPIFVTQKKLET 268

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E +M   F   I+S+R+LP    Q   
Sbjct: 269 EKDHVEGFSPEVAWVTKSGKSDLAEPIAIRPTSETIMYPYFAKWIRSHRDLPLKINQWTS 328

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R E +     +R+REFL ++ ++   T + +    + +   Y  I+  L
Sbjct: 329 IVRWEFKHPTPFIRTREFLWQEGHTAHSTRKEALEMVDIILNEYASIYEDL 379


>gi|226320972|ref|ZP_03796518.1| prolyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226233623|gb|EEH32358.1| prolyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 488

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 151/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-- 357
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I     
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKGD 298

Query: 358 --DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             ++   D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ +++      
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVSKVKVEL 388


>gi|66475910|ref|XP_627771.1| proline-tRNA synthetase; class II aaRS (ybak RNA binding domain
           plus tRNA synthetase) [Cryptosporidium parvum Iowa II]
 gi|46229315|gb|EAK90164.1| proline-tRNA synthetase; class II aaRS (ybak RNA binding domain
           plus tRNA synthetase) [Cryptosporidium parvum Iowa II]
          Length = 719

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 5/174 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++       G  +S      F+   G   Y    S+G+   R +  +I +  D KG++
Sbjct: 444 RAVQAATSHLLGQNFSKMFGVEFEDEKGNKEYAHQTSWGLT-TRAIGVMIMTHGDNKGLV 502

Query: 340 WPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  VAP ++ +I I       +  +  C ++   L K G  V  DD      G ++   
Sbjct: 503 LPPKVAPVQVIIIPIIFKTVITEEQKKICNEVECILKKAGVRVKIDDRSNYTPGWKYNHW 562

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ G  L+  VG + +    V +  R    + D+ + E+ +         +  L
Sbjct: 563 EVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISELESKIPKLLEEFQNRL 616



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++++ MI  +   G Y   P      + + ++  ++  +        P  +    L  
Sbjct: 240 QVIVKSEMIEYYDISGCYILRPWSYFIWETIQSVFDQKIKQHDVQNAYFPIFVTQKKLET 299

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E +M   F   I+S+R+LP    Q   
Sbjct: 300 EKDHVEGFSPEVAWVTKSGKSDLAEPIAIRPTSETIMYPYFAKWIRSHRDLPLKINQWTS 359

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R E +     +R+REFL ++ ++   T + +    + +   Y  I+  L
Sbjct: 360 IVRWEFKHPTPFIRTREFLWQEGHTAHSTRKEALEMVDIILNEYASIYEDL 410


>gi|289619828|emb|CBI54111.1| unnamed protein product [Sordaria macrospora]
          Length = 542

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 11/174 (6%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           RGI+       G  +S     T +     GK  +V   S+G+ + RV+  ++    D KG
Sbjct: 255 RGIQGATSHCLGQNFSKMFDITVEDPAEKGKHIHVWQNSWGL-STRVIGVMVMIHGDDKG 313

Query: 338 IIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
           ++ P  +A  +  LI +                  +++ A L K G     D   G    
Sbjct: 314 LVLPPRIAKIQSILIPVGLTAKMSAEEKDAHMKKVDELLATLKKAGVRTDVDTREGYTPA 373

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F   +L G PL++  G K  +   +    R TG +  + + E+         
Sbjct: 374 WKFNDWELKGVPLRIEFGPKDAAKDVISYARRDTGEKGTIPIAELTTKVPELLE 427



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 7/158 (4%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADL 79
            +++L+  +I  ++   G +   P      + +    +E  +  G  E + P   S   L
Sbjct: 62  QEVVLKAELIEYYTEISGFFIMRPATMYIWNVIRKWFQEHIDELGVEETNFPMFLSQKSL 121

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LPF   Q 
Sbjct: 122 EKEKEHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYAKWIRSHRDLPFRLNQW 181

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
               R E +     +R+REF+ ++ ++  LT + +   
Sbjct: 182 NSVVRWEAKQTTPFLRAREFMWQEGHTAHLTEQAAGEE 219


>gi|46446958|ref|YP_008323.1| prolyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626837|sp|Q6MBK1|SYP_PARUW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46400599|emb|CAF24048.1| putative prolyl-tRNA synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 507

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 140/434 (32%), Gaps = 86/434 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG      P     + L  E+   + + KE   +
Sbjct: 39  GSMVIKPWGYGIWENIQRQLDDRIKETGHENAYFPLFIPLSFLEKEAAHIEGFAKECAVV 98

Query: 97  ADRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++ +I  PT E ++ D F   ++SYR+LP    Q     R E
Sbjct: 99  THHRLEEKDGRLIPAGPLEEPLIVRPTSETIIGDSFSRWVESYRDLPLLINQWANVVRWE 158

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPR   +R+ EFL ++ ++   T E +      M   Y      +   +IP+      I
Sbjct: 159 MRPRI-FLRTTEFLWQEGHTAHATHEEALQETMTMLEVYRSFVEDV--LAIPV------I 209

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            G+ S         GE           FP        + ++     ++  T+ Y   +  
Sbjct: 210 VGEKS--------PGER----------FPGAENTFTLEAMMQDRKALQSCTSHYLGQNFA 251

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               +  S  E +   A        +   T+    +       DG               
Sbjct: 252 KGSNIRFSNMEGQLEYAYT----TSWGMTTRLIGSLIMCHGDDDG--------------- 292

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCD- 378
                          +  P  +A  +I ++ +    +      +  E + A L K     
Sbjct: 293 ---------------LRLPPRIAHKQIVIVPVIPKPELEAQVLEYAENLAAELRKQIFYG 337

Query: 379 ----VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSLE 432
               V  D   ++ G +       G PL++ VG + +++  V +  R      ++ +  +
Sbjct: 338 KPLTVHIDKRDKRGGEKNWEWVKKGVPLRLEVGPRDINEQAVMVARRDQSPKNKQSLPKQ 397

Query: 433 EVINYASHRFSNNR 446
           + +  A+    + +
Sbjct: 398 QFVQQAASILEDIQ 411


>gi|294155892|ref|YP_003560276.1| proline--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600080|gb|ADE19576.1| proline--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 478

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 135/405 (33%), Gaps = 58/405 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +KG   + P      + +   + +         + +P L                + +  
Sbjct: 33  AKGTLIFKPNSYGIWELIQENLNKIFKEKDVENVYLPLLIP--------------ESLFN 78

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L    ++  + G   E            S +                +RP      + E 
Sbjct: 79  L----ERDHLEGFNPELATVTHVGDKELSEKYF--------------IRP------TSEV 114

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L  D +        S  SYN + + Y +        +  +R E        S EF+    
Sbjct: 115 LFADLFK------NSIESYNDLPIIYNQ-------WANVVRWEKTTNPFLRSREFLWQ-- 159

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E     S                     N +            +           E  
Sbjct: 160 --EGHTCHSDPIEARRFTRGMITTYSKFLKNFLAIPTIIGKKTPYEKFAGACSTYTIEAM 217

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R ++ G   Y    +S P S  FK    +D YV   S+G+ + R++ A+I +  D 
Sbjct: 218 MKDGRALQAGTSHYLAQNFSKPYSILFKNKKNEDEYVYQTSWGV-STRLLGAIIMTHGDN 276

Query: 336 KGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           +G+I P  VAP +I LI +  A     ++  ++++  L +    V  D   +Q G + A 
Sbjct: 277 RGVIIPPRVAPVQIDLIELFAAKSPKVKEVSDELFELLRRKW-RVRVDKSDKQPGFKAAN 335

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +++ G PL++ +G + + +++V +  R T  +  M+ +EV     
Sbjct: 336 SEIQGVPLRIEIGPRDLENNQVTLVRRDTLEKIVMNYKEVKEKVQ 380


>gi|70950383|ref|XP_744519.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524507|emb|CAH79733.1| hypothetical protein PC000457.03.0 [Plasmodium chabaudi chabaudi]
          Length = 333

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 5/162 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S R I+     Y GT ++      F+       YV   S+G    R +  +I    D KG
Sbjct: 57  SGRAIQAATSHYLGTNFAKMFKIEFEDEQENKQYVHQTSWGCT-TRSIGVMIMVHSDNKG 115

Query: 338 IIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFA 393
           +I P +VA +K  ++ I      +    + C+ I   L     +  +DD      G +F 
Sbjct: 116 LILPPNVAKYKAVIVPILYKNTDETAIFNYCKDIEKILKNAQINCIFDDRDLYSPGYKFN 175

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +L G P+++ VG K + ++      R    + ++  E V+
Sbjct: 176 HWELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKESVL 217


>gi|15220911|ref|NP_173238.1| threonyl-tRNA synthetase, putative / threonine--tRNA ligase,
           putative [Arabidopsis thaliana]
 gi|85701287|sp|Q8GZ45|SYTC_ARATH RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9665073|gb|AAF97275.1|AC034106_18 Strong similarity to threonyl-tRNA synthetase from Arabidopsis
           thaliana gb|Y14329 and is a member of the tRNA
           synthetase PF|00587 class II
 gi|332191535|gb|AEE29656.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 458

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 108/323 (33%), Gaps = 42/323 (13%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVM-RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    +  +  R+E     G M R R F+  DA+ F    +  +     +      ++ 
Sbjct: 170 LPIRMAEFGVLHRNEDSGALGGMTRVRRFVQDDAHIF-CRVDQVEEEVKGVLDFIDYVYR 228

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G     +   + P       E    A+    +              +           
Sbjct: 229 IFGFTY-ELTLSTRPKDHIGDLETWAKAENDLEKALDDFGKPWVIKEGDG---------- 277

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                     A      +  + D+     + +   ++    F             +    
Sbjct: 278 ----------AFYGPKIDITVSDARNRKFQCATIQLD----FQLPA----CFKLKYLSEK 319

Query: 307 GK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            + +  V + S  +G++  + A++   + G   IWP  ++P +  + ++    + C    
Sbjct: 320 NEMEAPVMIHSAVLGSIERMFAILLEHYKG---IWPFWLSPRQAIVCSL---SEDCSSYA 373

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-- 423
           +++  ++++VG  V  D+    +  + A A    +   ++VG K V+  +V ++ R    
Sbjct: 374 KQVQKQINEVGYYVDIDESDRSLRKKVADARDAPYNYILVVGQKEVATGQVTVRLREDPE 433

Query: 424 --GIREDMSLEEVINYASHRFSN 444
                 +MS+E +++    +  N
Sbjct: 434 GRKDLPEMSIESLLDEFKFKTVN 456


>gi|224534632|ref|ZP_03675206.1| proline--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514101|gb|EEF84421.1| proline--tRNA ligase [Borrelia spielmanii A14S]
          Length = 488

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 155/461 (33%), Gaps = 93/461 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      +++I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIHSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFR 119
                           + E+G  ++Y   ML     L    D    + P        I +
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYGFLEKEKDHIDGFSPEF-----AIIK 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                    P              RP                        S+     M+ 
Sbjct: 94  DAGGESLAEPLVL-----------RPT-----------------------SETIIWNMYS 119

Query: 180 SYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +++ +  L LK    +  +R E        + EF+                    I   
Sbjct: 120 KWIKSYRDLPLKINQWANVIRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDV 179

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F +      +     +     +   +    ++L ++K    + ++     Y G  ++
Sbjct: 180 YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSVEALMQDK----KALQAATSHYLGLNFA 235

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DGK  YV   S+G+ + R++ A+I    D +G+I P  +AP +I +I I 
Sbjct: 236 KAFDVKFQDKDGKMRYVFASSWGV-STRLIGALIMVHSDERGLILPPRIAPIEIIVIPIF 294

Query: 356 AHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
             +        D  + +   L K    V  D D+    G +F+ A+  G P+++ +G   
Sbjct: 295 KKEDKINKKILDYSDCVVQALKKAEFRVEIDKDIRSSPGFRFSSAEFKGIPIRLEIGIND 354

Query: 411 VSDSKVEIKHRLTGI--REDMSLEEVINYASHRFSNNRPVL 449
           +  + V I  R      +  +SL+ +++       + +  L
Sbjct: 355 ILLNSVTIIRRDKDKKFKYQISLDSLVSKVKAELDSMQKDL 395


>gi|311893995|dbj|BAJ26403.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 556

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 111/228 (48%), Gaps = 4/228 (1%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
            S+ F P  +    D    +  L+   G++    + G+++ LPLG +  D ++ I R+  
Sbjct: 10  ASRLF-PTPRPRATDPTAPTKDLLEHLGLVGRTDTTGVHTLLPLGLRVRDQLDRITRDAF 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRS 120
            R G   +++PTLQS  LW ESGR+  Y  E   +  R     M   PT EE+ T   RS
Sbjct: 69  ERNGFNSLALPTLQSRTLWEESGRWKVYTAEGALVTTRVGGADMCLAPTSEEMATATVRS 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H++S+R+LP        KFRDEL PR G+MR REF M DAY+FD    G   S   +  +
Sbjct: 129 HLRSHRDLPVRLTLNTTKFRDELSPRGGLMRGREFTMADAYTFDPDRAGMLESVRLLNRA 188

Query: 181 YLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                  +GL       A+ G I    + E +VLAD G++ +      
Sbjct: 189 CTDALTGIGLHGVFQAPADGGAISAGPTTEHLVLADFGQSSILACDHC 236



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 1/178 (0%)

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A      +          +  +   +EV H+F  GT+YS  M  TF   +G      MG 
Sbjct: 372 ADVHTAADGLDCGRCSAGRYRATEAVEVAHVFELGTQYSGKMHLTFTDDNGIQRTPYMGC 431

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            GIG  R +  +     D  G+ W     P  + L+ +++     ++  ++   RL ++G
Sbjct: 432 SGIGLTRCIQTLAGIHRDANGLRWKPGTGPADVHLVVLRSDQAEQQERTDRTARRLQQLG 491

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             +  DD     G +F  A  LG P  +++  +  +D ++E   R TG R  ++ +++
Sbjct: 492 LRLLIDDRPLPAGEKFHYAQALGVPTALVLSPQ-RADGELEAIDRWTGRRSTITSDQL 548


>gi|315425261|dbj|BAJ46929.1| threonyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 593

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 142/438 (32%), Gaps = 46/438 (10%)

Query: 21  ASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGA--IEMSVPTLQ 75
             H  +LR   I        G   + P G    D ++    +     G     +    L 
Sbjct: 178 PEHGKVLRRLGIDWEELSDSGHMHYGPEGTIIYDLISDYASKIVRELGFPVYFVKGTNLF 237

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           S +          +G+ M ++ + + +  +           + R+ + SYR+LPF  +++
Sbjct: 238 SLESRPIREHASLFGQRMYKV-EVDGRPYVMRYAACFQQFALARNWVISYRSLPFGMFEV 296

Query: 136 QLKFRDELRPRFGV-MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E R    +  R R+  M D + F      +     K+         +LG     
Sbjct: 297 ADSYRLEQRGELVLGFRLRKMSMPDLHVFCRDIPEALQIVEKIHDKIYSEIEKLGRDYYS 356

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   +       S +F       E + F  K       P   + + +  S          
Sbjct: 357 LYNLT-------SRKFFE-----ENRGFFQKLLKREKKPVLLSFYPENSSYY-------- 396

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                       + D     + +    I+VG+   FG  Y           DG+  Y  +
Sbjct: 397 ----WVLNIEYHIIDKFGRPREIGTVQIDVGNAERFGITYVE--------KDGEKKYPVI 444

Query: 315 GSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +     R + AV++++        P  + P ++ ++ +    +       ++  ++
Sbjct: 445 LHSALIGTVERYLYAVVDTALSKTPPTLPTWLCPTQLRILPLN---EKYNKRAVQLAEKI 501

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +K G  V  DD  E +  +   A+    P    +G K      + I+ R     + M L+
Sbjct: 502 TKYGIRVDVDDRPETLAKKVYEAETSWIPYVATLGPKEAKKGTLAIRIRGKKGVKQMRLK 561

Query: 433 EVINYASHRFSNN--RPV 448
            ++        N   RP+
Sbjct: 562 PLVKLIQKETENYPFRPL 579


>gi|216263860|ref|ZP_03435854.1| prolyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|215979904|gb|EEC20726.1| prolyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 488

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 154/461 (33%), Gaps = 93/461 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFR 119
                           + E+G  ++Y   ML     L    D    + P        I +
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYGFLEKEKDHIDGFSPEF-----AIIK 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                    P              RP                        S+     M+ 
Sbjct: 94  DAGGESLVEPLVL-----------RPT-----------------------SETIIWNMYS 119

Query: 180 SYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +++ +  L LK    +  +R E        + EF+                    I   
Sbjct: 120 KWIKSYRDLPLKINQWANVIRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDV 179

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F +      +     +     +   +    ++L ++K    + ++     Y G  ++
Sbjct: 180 YKRFMEDYLAIPVFCGKKSENEKFAGAVSTYSVEALMQDK----KALQAATSHYLGLNFA 235

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I 
Sbjct: 236 KAFDVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPVEIIVIPIF 294

Query: 356 AHDQ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
             +        D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   
Sbjct: 295 KKEDEINKKILDYSDCVVHTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRIEVGIND 354

Query: 411 VSDSKVEIKHRLT--GIREDMSLEEVINYASHRFSNNRPVL 449
           +  + V I  R      +  +SL+ +++       + +  L
Sbjct: 355 ILLNSVTIIRRDKDRKFKYQISLDSLVSKVRVELDSMQKDL 395


>gi|315425492|dbj|BAJ47154.1| threonyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
 gi|315427484|dbj|BAJ49088.1| threonyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
 gi|315427502|dbj|BAJ49105.1| threonyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 608

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 142/438 (32%), Gaps = 46/438 (10%)

Query: 21  ASHKLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGA--IEMSVPTLQ 75
             H  +LR   I        G   + P G    D ++    +     G     +    L 
Sbjct: 193 PEHGKVLRRLGIDWEELSDSGHMHYGPEGTIIYDLISDYASKIVRELGFPVYFVKGTNLF 252

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           S +          +G+ M ++ + + +  +           + R+ + SYR+LPF  +++
Sbjct: 253 SLESRPIREHASLFGQRMYKV-EVDGRPYVMRYAACFQQFALARNWVISYRSLPFGMFEV 311

Query: 136 QLKFRDELRPRFGV-MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E R    +  R R+  M D + F      +     K+         +LG     
Sbjct: 312 ADSYRLEQRGELVLGFRLRKMSMPDLHVFCRDIPEALQIVEKIHDKIYSEIEKLGRDYYS 371

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   +       S +F       E + F  K       P   + + +  S          
Sbjct: 372 LYNLT-------SRKFFE-----ENRGFFQKLLKREKKPVLLSFYPENSSYY-------- 411

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                       + D     + +    I+VG+   FG  Y           DG+  Y  +
Sbjct: 412 ----WVLNIEYHIIDKFGRPREIGTVQIDVGNAERFGITYVE--------KDGEKKYPVI 459

Query: 315 GSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +     R + AV++++        P  + P ++ ++ +    +       ++  ++
Sbjct: 460 LHSALIGTVERYLYAVVDTALSKTPPTLPTWLCPTQLRILPLN---EKYNKRAVQLAEKI 516

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +K G  V  DD  E +  +   A+    P    +G K      + I+ R     + M L+
Sbjct: 517 TKYGIRVDVDDRPETLAKKVYEAETSWIPYVATLGPKEAKKGTLAIRIRGKKGVKQMRLK 576

Query: 433 EVINYASHRFSNN--RPV 448
            ++        N   RP+
Sbjct: 577 PLVKLIQKETENYPFRPL 594


>gi|111115231|ref|YP_709849.1| prolyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|123145721|sp|Q0SNA5|SYP_BORAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110890505|gb|ABH01673.1| prolyl-tRNA synthetase [Borrelia afzelii PKo]
          Length = 488

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 154/461 (33%), Gaps = 93/461 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFR 119
                           + E+G  ++Y   ML     L    D    + P        I +
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYGFLEKEKDHIDGFSPEF-----AIIK 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                    P              RP                        S+     M+ 
Sbjct: 94  DAGGESLVEPLVL-----------RPT-----------------------SETIIWNMYS 119

Query: 180 SYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +++ +  L LK    +  +R E        + EF+                    I   
Sbjct: 120 KWIKSYRDLPLKINQWANVIRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDV 179

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F +      +     +     +   +    ++L ++K    + ++     Y G  ++
Sbjct: 180 YKRFMEDYLAIPVFCGKKSENEKFAGAVSTYSVEALMQDK----KALQAATSHYLGLNFA 235

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I 
Sbjct: 236 KAFDVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPVEIIVIPIF 294

Query: 356 AHDQ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
             +        D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   
Sbjct: 295 KKEDEINKKILDYSDCVVHTLKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRIEVGIND 354

Query: 411 VSDSKVEIKHRLT--GIREDMSLEEVINYASHRFSNNRPVL 449
           +  + V I  R      +  +SL+ +++       + +  L
Sbjct: 355 ILLNSVTIIRRDKDRKFKYQISLDSLVSKVRVELDSMQKDL 395


>gi|167948462|ref|ZP_02535536.1| threonyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 170

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 12/172 (6%)

Query: 277 VSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSH 333
              R  ++G I      +S+P  + A +   D  K   V +    +G++     ++   +
Sbjct: 6   CLERVWQLGTI---QLDFSMPERLGAHYIAEDNSKQVPVMLHRAVLGSLERFIGILIEHY 62

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   ++P ++ ++NI           E     L + G  V  D   E+IG +  
Sbjct: 63  AGSMPLW---LSPVQVVVMNITDRQAK---YAENSVKALREAGFRVESDLRNEKIGFKIR 116

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              L+  P  ++VG + +    + ++ R       M L+E I   +   +  
Sbjct: 117 EHTLMRVPYLLVVGDREMEQGSLAVRTRKGEDLGSMPLQEFIAKMAAEVAER 168


>gi|330977709|gb|EGH77612.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 174

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 12/176 (6%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVI 329
             K    R  + G        ++LP  +SA +   D  + + V +    +G+      ++
Sbjct: 2   CLKDCLGRVWQCGT---LQLDFNLPIRLSAEYVSEDNSRKNPVMLHRAILGSFERFIGIL 58

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              ++G    W   +AP +  ++NI        D   ++   L++ G     D   E+IG
Sbjct: 59  IEHYEGAFPAW---LAPTQAVIMNITDK---QADFALEVEKTLAESGFRAKSDLRNEKIG 112

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +     LL  P  +++G + V    V ++ R       M + +   + +   S  
Sbjct: 113 FKIREHTLLKVPYLLVIGDREVEMQTVAVRTREGADLGSMPVAQFAEFLAQAVSRR 168


>gi|224531964|ref|ZP_03672596.1| prolyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511429|gb|EEF81835.1| prolyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 488

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 154/461 (33%), Gaps = 93/461 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFR 119
                           + E+G  ++Y   ML     L    D    + P        I +
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYGFLEKEKDHIDGFSPEF-----AIIK 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +        P              RP                        S+     M+ 
Sbjct: 94  NAGGESLMEPLVL-----------RPT-----------------------SETIIWNMYS 119

Query: 180 SYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +++ +  L LK    +  +R E        + EF+                    I   
Sbjct: 120 KWIKSYRDLPLKINQWANVIRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDV 179

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F +      +     +     +   +    ++L ++K    + ++     Y G  ++
Sbjct: 180 YKRFMEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFA 235

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DGK  +V   S+G+ + R++ A+I    D KG+I P  +AP +I +I I 
Sbjct: 236 KAFDVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDEKGLILPPRIAPIEIIVIPIF 294

Query: 356 AHDQ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
             +        D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   
Sbjct: 295 KKEDEINKKILDYSDCVMQILKKAEFRVEIDKDIRSSPGFRFSSAEFKGIPIRLEVGIND 354

Query: 411 VSDSKVEIKHRLTGI--REDMSLEEVINYASHRFSNNRPVL 449
           +  + V +  R      +  +SL+ + +       + +  L
Sbjct: 355 ILLNSVTLVRRDKEKKFKYQISLDSLASKVKVELDSMQKDL 395


>gi|115397539|ref|XP_001214361.1| threonyl-tRNA synthetase, mitochondrial precursor [Aspergillus
           terreus NIH2624]
 gi|114192552|gb|EAU34252.1| threonyl-tRNA synthetase, mitochondrial precursor [Aspergillus
           terreus NIH2624]
          Length = 380

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 109/341 (31%), Gaps = 49/341 (14%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMK 158
            D++    P +      +F+S   SYR LP  +       R+E+     G+ R R F   
Sbjct: 10  EDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEVSGSLSGLTRVRRFHQD 69

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D + F   P+  K            +    GL    +   + P    +    + L D+ E
Sbjct: 70  DGHIF-CRPQQIKGEIASALGFVDMVMTTFGLGPYRLVLSTRPEKDFIGS--LALWDSAE 126

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            Q+  +                 + S            A      + +L D   +  ++S
Sbjct: 127 AQLREA-----------------LDSTGREWAMNEGDGAFYGPKIDIQLQDQTGKYHQLS 169

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              +++     FG +Y +            G+   V +     G++    A++   + G 
Sbjct: 170 TIQLDMNLPQRFGLEYQVAEGEEDYNPATPGRATPVLVHRANFGSLERFLALLIEQYAG- 228

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF---------------- 380
              WP  ++P +  ++ +   D+      ++    +S  G                    
Sbjct: 229 --RWPFWLSPRQGIILTVNQ-DEAVVQQAQEAAGMIS--GFRALRPGDGTPTPLSSVDST 283

Query: 381 ----WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D     +G +   A  + + L  I+G K V+ S++ 
Sbjct: 284 FLIDVDTSSTTLGKKIQRAKQMKYNLIFILGPKDVAQSRIT 324


>gi|51598659|ref|YP_072847.1| prolyl-tRNA synthetase [Borrelia garinii PBi]
 gi|81825638|sp|Q661L6|SYP_BORGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51573230|gb|AAU07255.1| prolyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 488

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 153/461 (33%), Gaps = 93/461 (20%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFR 119
                           + E+G  ++Y   ML     L    D    + P        I +
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYGFLEKEKDHIEGFSPEF-----AIIK 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                    P              RP                        S+     M+ 
Sbjct: 94  DAGGESLAEPLVL-----------RPT-----------------------SETIIWNMYS 119

Query: 180 SYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +++ +  L LK    +  +R E        + EF+                    I   
Sbjct: 120 KWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEAVEETLLILDL 179

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              F +      +     +     +   +    ++L ++K    + ++     Y G  ++
Sbjct: 180 YKRFMEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFA 235

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DGK  +V   S+GI + R++ A+I    D KG+I P  +AP +I +I I 
Sbjct: 236 KAFDVKFQDKDGKMRHVFASSWGI-STRLIGALIMVHSDEKGLILPPRIAPIEIIVIPIF 294

Query: 356 AHDQ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
             +        D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   
Sbjct: 295 KKEDEINKKILDYSDCVVHALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRIEVGIND 354

Query: 411 VSDSKVEIKHRLT--GIREDMSLEEVINYASHRFSNNRPVL 449
           V  + V I  R      +  +SL+ + +       + +  L
Sbjct: 355 VLLNSVTIMRRDKDRKFKYQISLDSLASKVKVELDSMQKDL 395


>gi|296423890|ref|XP_002841485.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637725|emb|CAZ85676.1| unnamed protein product [Tuber melanosporum]
          Length = 419

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K  +   IE+GH F+ GT+Y++P+ A      G+   + MG +GIG  R++ A
Sbjct: 233 CPKCGVGKLKTTGAIELGHTFHLGTRYTVPLRANVLNEAGEWKPMVMGCHGIGVSRMIPA 292

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC---RDACEKIYARLSKVG------CD 378
           + E   D  G+ WP  VAP+ + L+            ++  E +Y  L   G       D
Sbjct: 293 IAEGYSDHNGLCWPRVVAPYDVVLVCGSMKKNAVVPPKEDIEAVYDVLVSKGLAGGTDVD 352

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  + I  +   A L+G+P+  I+G  +V   KVEI+ R TG R  + L  +    
Sbjct: 353 VILDDRDKDIVWKIKDAVLVGYPIMCIMGKSWVDSKKVEIEVRKTGARLGVELGNLRTVI 412

Query: 439 SHRFSN 444
               + 
Sbjct: 413 EGLLNE 418



 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD T + +  +Y ++  +Y  +F  +GL  I   A+SG +GG +SHE+   + +
Sbjct: 1   MKDLYTFDATEDAALKTYRQVQGAYQALFEEIGLPYIHAEADSGNMGGSVSHEYHFPSLS 60

Query: 217 GETQVFCSKDFMDFPIPS 234
           GE  V    D        
Sbjct: 61  GEDTVISCPDCGYCANEE 78


>gi|312148113|gb|ADQ30772.1| prolyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 488

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 149/450 (33%), Gaps = 85/450 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK++L I+Q+    A++A +  +          KG    +P G      + +I+ ++   
Sbjct: 13  SKWYLDIVQK----AKLADYSPV----------KGCMVIMPYGYSIWSKIQSILDKK--- 55

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                           + E+G  ++Y   ML      ++   +          I +    
Sbjct: 56  ----------------FKETGHENAYFP-MLIPYSFLEREKDHIDGFSPEFA-IIKDAGG 97

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                P              RP                        S+     M+  +++
Sbjct: 98  ESLAEPLVL-----------RPT-----------------------SETIIWNMYSKWIK 123

Query: 184 IFHRLGLK----SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +  L LK    +  +R E        + EF+                    I      F
Sbjct: 124 SYRDLPLKINQWANVVRWEKRTRPFLRTTEFLWQEGHTAHATEEEALEETLLILDVYKRF 183

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     +     +   +    ++L ++K    + ++     Y G  ++    
Sbjct: 184 IEDYLAIPVFCGKKSEKEKFAGAVSTYSIEALMQDK----KALQAATSHYLGLNFAKAFD 239

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  DGK  +V   S+G+ + R++ A+I    D KG++ P  +AP +I +I I   + 
Sbjct: 240 VKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEKGLVLPPRIAPIEIIVIPIFKKED 298

Query: 360 ----VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  D  + +   L K    V  D D+    G +F+ A+  G P+++ VG   V  +
Sbjct: 299 EINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFRFSSAEFKGIPIRLEVGINDVLLN 358

Query: 415 KVEIKHRLT--GIREDMSLEEVINYASHRF 442
            V I  R      +  +SL+ ++       
Sbjct: 359 SVTISRRDKDRKFKYQISLDSLVIKVKVEL 388


>gi|297850190|ref|XP_002892976.1| hypothetical protein ARALYDRAFT_472010 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338818|gb|EFH69235.1| hypothetical protein ARALYDRAFT_472010 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 105/331 (31%), Gaps = 40/331 (12%)

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                    LP       +  R+E      G+ R R F+  DA+ F    +        +
Sbjct: 161 NHFPNIEAELPIRMADFGVLHRNEESGALSGMTRVRRFVQDDAHIF-CRVDQVGEEVKGV 219

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G     ++  +         E    A+    +   +          +  
Sbjct: 220 LDFIDYVYKIFGFTY-ELKLSTPEKKYIGDLETWDKAEKDLEKALDNFGKPWVINKGDG- 277

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                              A      +  + D++    + +   ++      F  KY   
Sbjct: 278 -------------------AFYGPKIDITVSDAMKRKFQCATLQLDFQLPACFKLKY--- 315

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   + K+  V +    +G++  + A++   + G   IWP  ++P +  + ++   
Sbjct: 316 ----ITKKNEKERPVMIHRAVLGSIERMFAILLEHYKG---IWPFWLSPRQAIVCSL--- 365

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +++  ++ + G  V  D+    I  + A A    +   ++VG K  +  +V 
Sbjct: 366 SEDYSSYAKQVQKQIQEAGYYVDIDESDRSICKKVADARAAPYNYILVVGQKEATTGQVT 425

Query: 418 IKHRLT----GIREDMSLEEVINYASHRFSN 444
           ++ R          +MS++ +++    +  N
Sbjct: 426 VRLREDPAGRKDLPEMSIDSLLDEFKFKTIN 456


>gi|187918269|ref|YP_001883832.1| prolyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|119861117|gb|AAX16912.1| prolyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 491

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 8/174 (4%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  ++      F+   G+  YV   S+G+ + R++ A+I    D 
Sbjct: 219 MQDKKALQAGTSHYLGLNFAKAFDVKFQNKKGEMDYVFATSWGV-STRLIGALIMVHSDN 277

Query: 336 KGIIWPDSVAPFKISLINIKAHD----QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGS 390
           KG+I P  +AP +I ++ I   D    Q   +    I+  L +    V  D D+    G 
Sbjct: 278 KGLILPPKIAPIEIIIVPIFKRDGDANQKILEYSIIIFNLLKEAKFRVELDRDVKNSPGF 337

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTGIREDMSLEEVINYASHRF 442
           +FA A+L G P+++ +GS  +  + V +  R      +  +S+EE+ +   H  
Sbjct: 338 RFAAAELKGIPIRIEIGSNDIFMNCVTVARRDKDKNSKYQVSVEELSSKIRHEL 391



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 20/190 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L I+Q+    A++  +  +          KG    +P G    + + +I+ ++  
Sbjct: 15  FSKWYLDIVQK----AKLIDYSPV----------KGCMVIMPYGYAIWERIKSILDDKFK 60

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P L   +    E      +  E+  +     +   + ++  PT E ++ ++
Sbjct: 61  ETGHENAYFPLLIPYEFLEREKEHVKGFSPELAVITTAGGEELAEPLVLRPTSETIIWNM 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   IKSYR+LP    Q     R E R R   +R+ EFL ++ ++   T + +      +
Sbjct: 121 YSKWIKSYRDLPVKINQWANIIRWEKRTR-PFLRTTEFLWQEGHTAHETAKEALEETLFI 179

Query: 178 FVSYLRIFHR 187
              Y R    
Sbjct: 180 LNLYKRFVED 189


>gi|302423350|ref|XP_003009505.1| bifunctional aminoacyl-tRNA synthetase [Verticillium albo-atrum
           VaMs.102]
 gi|261352651|gb|EEY15079.1| bifunctional aminoacyl-tRNA synthetase [Verticillium albo-atrum
           VaMs.102]
          Length = 535

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 120/382 (31%), Gaps = 71/382 (18%)

Query: 23  HKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADL 79
            +++L+  M+  ++   G +   P        +     ++    G  E S P  L S  L
Sbjct: 82  QEVVLKAEMVEYYNEIAGFFILRPASMYIWSAIRKWFSDKIELMGVEETSFPIFLSSKSL 141

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    DK     +   PT E VM   +   I+S+R+LP    Q 
Sbjct: 142 EKEKDHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQW 201

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +  L ++P+
Sbjct: 202 NSVVRWEAKQTTPFLRTREFLWQEGHTAHLTEELAGKEVLEILELYAGVYEQ--LLAVPV 259

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              +                  E + F    +         ++   I    S        
Sbjct: 260 VRGT----------------KTENEKFAGGFYTTTVEGYIPSNGRGIQGATSHCLGQNFS 303

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 V +     +               H++                           
Sbjct: 304 KMFDITVEDPVNKGNHI-------------HVWQ-------------------------N 325

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKI 368
           S+G+ + RV+  ++    D KG++ P  +A  +  +I +           +   +  E I
Sbjct: 326 SWGL-STRVIGVMVMIHGDDKGLVLPPRIAKIQAIVIPVGITAKLAAEDRKKLEEGVEDI 384

Query: 369 YARLSKVGCDVFWDDMGEQIGS 390
              L K G     D        
Sbjct: 385 RHPLKKAGVRTESDHRCYTPAW 406


>gi|221109010|ref|XP_002168836.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 384

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L      +  +G+  WLP G    D +   +++ Q + G
Sbjct: 229 YLELLEEAKRRDHRKLGKELDLFH-FSQRVGQGLPLWLPKGAALRDRLEQFLKKAQKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   +L+V SG Y  YG +  +        +  +  P +     +I+ S   
Sbjct: 288 YEQVVTPHIGQKELYVTSGHYAKYGADSFQPITTPAEGEEFLLKPMNCPHHCEIYNSRPW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKD 159
           SY++LP  + +    +R E      G+ R R F   D
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDD 384


>gi|303313271|ref|XP_003066647.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106309|gb|EER24502.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 603

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/450 (14%), Positives = 130/450 (28%), Gaps = 82/450 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +   ++  + G    S P   S D L 
Sbjct: 104 QQVLLKGDMLDYYDVSGCFVLKPHSFFIWEEIQSWFNDKIKKMGVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM                 + +  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGSSELEKKIAIRPTSETVMYPY--------------YAKWI 209

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              RD        +  R                                 R   K+    
Sbjct: 210 RSHRD--------LPLRLNQWNSVV-------------------------RWEFKNPQPF 236

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +       +V                 ++ ++++  I  Q T   
Sbjct: 237 LRTREFLWQEGHTAHLTEAAAREEVLQILQHYAHV-------YEQLLAIPVIRGQKTDKE 289

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------ 310
                ++   +   +P     + RGI+ G     G  +S     T +    K        
Sbjct: 290 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPTSKPDEKKPPL 345

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +V   S+G+ + R +  ++    D +G++ P  VA  +  ++ +    +   D    I A
Sbjct: 346 HVWQNSWGL-STRTIGVMVMVHSDNRGLVLPPRVADVQTVIVPVGLTAKTPDDVRASINA 404

Query: 371 R-------LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                   L   G  V  D   G   G +F   +L G PL++  G    S   V    R 
Sbjct: 405 EIDHLASVLEAAGIRVEIDKREGYSPGWKFNDWELKGIPLRLEFGPGESSGGFVTTSRRD 464

Query: 423 --TGI-REDMSLEEVINYASHRFSNNRPVL 449
                 +  + + E+           +  L
Sbjct: 465 IPGKEGKSTIPIAELATAVPALLETIQADL 494


>gi|330507458|ref|YP_004383886.1| threonyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928266|gb|AEB68068.1| threonyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 621

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/437 (14%), Positives = 142/437 (32%), Gaps = 60/437 (13%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R  ++        G   + P G+     +  ++ E+    GA+E+  P +   +  
Sbjct: 204 ELMRRLELVDYEPGSDSGNMRYYPKGRLVKSLLETLVLEKAADMGAMEVETPIMYDMEHP 263

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +         D + + +            +      SY++LP    ++  
Sbjct: 264 TLKKYLDRFPARQ----YQIDSDKRKLFLRFAACFGQFLMGHDMSISYKSLPLKMIEMTR 319

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++       +   + K +++ + +   +GL+    
Sbjct: 320 YSFRREQRGELVGIRRLRAFTMPDMHTMSRDMHSAIEEFRKQYLASISVLKEVGLEV--- 376

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        E   +A                          DII    ++E W   
Sbjct: 377 -------------EDYEVA-------IRFTRDFYKENQEFIAGLVDIIKKPVLIEMWDER 416

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM- 314
           +            D++ +   +S   I+V +               +    G      + 
Sbjct: 417 FFYFVLKFEFNFVDTMDKASALSTVQIDVENAER--------YDINYIDESGARRRPILL 468

Query: 315 -GSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             S      RV+ A++E +      GK  +    ++P ++ +I +    +  ++    + 
Sbjct: 469 HCSPSGAIERVMYAILEKAARLSLQGKLPMLETWLSPTQVRIIPVA---ERHQERALALA 525

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---- 425
             L   G     DD  E +G +   A     P   ++G + +   ++ +  R        
Sbjct: 526 GIL---GFRTDIDDRDETVGKKIRDAGREWVPYVAVIGDEELQSGRLAVTIRSESTPKSP 582

Query: 426 -REDMSLEEVINYASHR 441
            ++ M+++E+    +  
Sbjct: 583 AKKSMTVDELKERLTGE 599


>gi|195331460|ref|XP_002032419.1| GM23523 [Drosophila sechellia]
 gi|194121362|gb|EDW43405.1| GM23523 [Drosophila sechellia]
          Length = 1094

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 10/175 (5%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      ++  +  +  YV   S+G+   R +  +I    D +
Sbjct: 813 SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGLT-TRTIGVMIMVHADNQ 871

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++     +   D       DAC+ +  RL   G     D       
Sbjct: 872 GLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYRDNYSP 931

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G +F   +L G PL++ VG K +   ++    R TG +  + L +V         
Sbjct: 932 GWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTGEKITIPLADVEKKIPALLE 986


>gi|168998640|ref|YP_001687908.1| hypothetical protein pK2044_00390 [Klebsiella pneumoniae
           NTUH-K2044]
          Length = 333

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 83/284 (29%), Gaps = 39/284 (13%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L  +      T E  +     +    L I+ + G + + ++  + P     S       +
Sbjct: 72  LFDEEALDPCTLEQLEGECKSILHLVLDIYKQFGFEEVEIKLSTRPEKRMGSDTDWDRLE 131

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              +    ++       P E   +   +                               +
Sbjct: 132 NALSASLEAQGLQWSVNPGEGAFYGPKLEF---------------------------VLR 164

Query: 276 RVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESS 332
               R  + G         +LP      +   DG     V +     G++     ++   
Sbjct: 165 DAIGRDWQCGT---LQVDMNLPDRFDIGYIAEDGSTKRPVMLHRALFGSLERFTGILLEH 221

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + GK   W   ++P +  ++ I           E++   L + G     D   E+IG + 
Sbjct: 222 YAGKLPAW---LSPVQAVVMTITDKQHR---YAEQVLKALRRKGLRCETDLRNEKIGYKI 275

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               L   P  +I+G    + ++V ++ R       + L E  +
Sbjct: 276 REQTLARIPFLLIIGDAEENAARVTVRDRTGKCMGTLLLNEAAD 319


>gi|270610574|ref|ZP_06221671.1| threonine--tRNA ligase [Haemophilus influenzae HK1212]
 gi|270318077|gb|EFA29334.1| threonine--tRNA ligase [Haemophilus influenzae HK1212]
          Length = 151

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 9/156 (5%)

Query: 293 KYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            ++LP  + AT+   D  +   V +    +G++     +I   + G    W   +AP + 
Sbjct: 1   DFALPGRLDATYVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAW---LAPTQA 57

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++NI        D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K
Sbjct: 58  VVMNIT---DSQADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDK 114

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +++ KV ++ R        ++EE      ++  + 
Sbjct: 115 EIAEGKVAVRTRKGADLGTFTVEEFAEILKNQVRSR 150


>gi|38639683|ref|NP_943452.1| theronyl-tRNA synthetase [Klebsiella pneumoniae]
 gi|38016781|gb|AAR07802.1| theronyl-tRNA synthetase [Klebsiella pneumoniae]
 gi|238549656|dbj|BAH66007.1| theronyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 345

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 83/284 (29%), Gaps = 39/284 (13%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L  +      T E  +     +    L I+ + G + + ++  + P     S       +
Sbjct: 84  LFDEEALDPCTLEQLEGECKSILHLVLDIYKQFGFEEVEIKLSTRPEKRMGSDTDWDRLE 143

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              +    ++       P E   +   +                               +
Sbjct: 144 NALSASLEAQGLQWSVNPGEGAFYGPKLEF---------------------------VLR 176

Query: 276 RVSARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESS 332
               R  + G         +LP      +   DG     V +     G++     ++   
Sbjct: 177 DAIGRDWQCGT---LQVDMNLPDRFDIGYIAEDGSTKRPVMLHRALFGSLERFTGILLEH 233

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + GK   W   ++P +  ++ I           E++   L + G     D   E+IG + 
Sbjct: 234 YAGKLPAW---LSPVQAVVMTITDKQHR---YAEQVLKALRRKGLRCETDLRNEKIGYKI 287

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               L   P  +I+G    + ++V ++ R       + L E  +
Sbjct: 288 REQTLARIPFLLIIGDAEENAARVTVRDRTGKCMGTLLLNEAAD 331


>gi|255027702|ref|ZP_05299688.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 204

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 16/219 (7%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           M     +      D + ++    +     A      + ++  ++ + + +S   ++    
Sbjct: 1   MWEKAQAMLKSAMDEMEMD--YFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLD---- 54

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++      T+ G DG+ H   +   G+ +      A +   + G    W   +AP
Sbjct: 55  FLLPERF----DLTYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTW---LAP 107

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ +I + A      D  + +  +L + G     DD  E++G +   A     P  +++
Sbjct: 108 VQMEIIPVNA--DAHLDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVL 165

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G + V    V ++   +   E M L+  I       S  
Sbjct: 166 GDQEVEAGSVNVRRYGSKDSETMDLDAFIAQVVAEVSKY 204


>gi|218513382|ref|ZP_03510222.1| prolyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 105

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/105 (72%), Positives = 93/105 (88%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQERPML 105


>gi|312601357|gb|ADQ90612.1| Prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 290

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 74/176 (42%), Gaps = 2/176 (1%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              + R ++     + G  ++      +K  + K       S+G+ + R++ A++    D
Sbjct: 28  MMQNFRALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVHSD 86

Query: 335 GKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             G+I+P  +AP ++ ++      +Q  +   ++I   L         DD  +QIG +  
Sbjct: 87  DNGLIFPPKIAPIQVDILEFFSKKNQEVKIFSKRIAKILKNAKISYKIDDTDQQIGYKIN 146

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +++ G P+++ +G   V ++++ +  R    +   +++ +           +  L
Sbjct: 147 NSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILEQIQADL 202


>gi|154287788|ref|XP_001544689.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408330|gb|EDN03871.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 523

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 33/193 (17%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +                                   R  DR  
Sbjct: 1   MLPLGLRVQEKLERLVDKHM---------------------------------RTLDRKK 27

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 28  ARFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 87

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG LSHEF +    GE  +
Sbjct: 88  TFDYNAEMAIKTYNAVKETYVRLFDELRIPYIIATADSGNMGGSLSHEFHLPNPKGEDTI 147

Query: 222 FCSKDFMDFPIPS 234
               +        
Sbjct: 148 ISCSNCRYVYNEE 160



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 97/181 (53%), Gaps = 21/181 (11%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATF------KGADGK-------DHYVQMGSY 317
             E    +   IE+ H F+ GT+YS  ++A+          D K          +QMG +
Sbjct: 336 CGEQAVQTHTAIELAHTFHLGTRYSKVLNASVAVPSTLLSNDSKANDNSTFSVPLQMGCH 395

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ +S  + KG+ WP ++APF+  +I     D+   +  EK+Y  +S++  
Sbjct: 396 GIGVSRMISAIADSLANSKGLNWPRAIAPFEAMIIP----DKGLEEEAEKVYDAISRINI 451

Query: 378 DV---FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEE 433
           D      DD  + +  +   ADL+G+P+ ++VG  +  ++K+E++ HRL  +RE +SL +
Sbjct: 452 DAVDAIIDDRDKNLAWKLRDADLIGYPVIIVVGKSWRMENKLEVQCHRLNNLRETVSLPD 511

Query: 434 V 434
           +
Sbjct: 512 L 512


>gi|153217652|ref|ZP_01951333.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113402|gb|EAY32222.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 159

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 9/160 (5%)

Query: 290 FGTKYSLP--MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               ++LP  + AT+ G   +    V +    +G++     ++   + G    W   +AP
Sbjct: 1   MQLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAP 57

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +  ++NI        D   ++  +L K G     D   E+IG +     L   P  ++ 
Sbjct: 58  EQAVVVNITDK---QADYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVC 114

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G + +   ++ ++ R         L++ I +     ++ +
Sbjct: 115 GDQEMEADEIAVRTRKGKDLGKFKLDDFIAHIQAEIASRK 154


>gi|31544425|ref|NP_853003.1| prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|81834139|sp|Q7NBP5|SYP_MYCGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|31541270|gb|AAP56571.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930481|gb|ADC30420.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 474

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 153/450 (34%), Gaps = 74/450 (16%)

Query: 1   MRRSKYFLPILQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAII 57
           M   K       +N  D   E+ S     +  +IH  + KG  S+LP G K    +   +
Sbjct: 1   MAFKKNLASSKDDNISDWYTEVIS-----KGNLIHYSNIKGFMSFLPNGWKIWQLIKKEL 55

Query: 58  REEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVM 114
            +E ++   +E+ +P+L S  D  +E    + +  E+  +       +  I  PT E   
Sbjct: 56  TKEFDQRDILELCLPSLISQNDFLLEKKHLEGFAPELFIVTKTSNETEKYILRPTSEIAF 115

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            +++R  +++YR LP    Q    FR E         +R FL    + +           
Sbjct: 116 CNLWRETLRNYRQLPIKHNQWTSVFRVEKN-------TRPFLRNSEFFW----------- 157

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                                            HE     +T E          DF +  
Sbjct: 158 ---------------------------------HEIHSCFETEE-------QSNDFAV-- 175

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +          + +     A     ++           E      + ++          +
Sbjct: 176 DIWKLYQRFIKDILCIPLVAGEKTEAEKFAGAKTTYTVETIMPDGQALQSATSHNLSQNF 235

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S      ++  +     V   S G+ + R++ A+I +  D  G+++P  VAP+ ISL  I
Sbjct: 236 SKAFDIRYQTKNNDYQNVFSMSAGV-STRIIGAIIMTHGDDDGLVFPTKVAPYHISLNCI 294

Query: 355 KAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               +Q      +++  + S+    V  +   +  G     + L G    +++G   +  
Sbjct: 295 FDDTNQELNAKLKELANKYSQK-YRVHLNVNKDSTGEIIKNSQLRGDCCVLLMGPNDLKK 353

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++    R+T  ++ ++L+ +       FS
Sbjct: 354 NEIVFIDRITKQKQFINLDHLDQKLEELFS 383


>gi|121730168|ref|ZP_01682562.1| threonyl-tRNA synthetase [Vibrio cholerae V52]
 gi|121628087|gb|EAX60627.1| threonyl-tRNA synthetase [Vibrio cholerae V52]
          Length = 153

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G   +    V +    +G++     ++   + G    W   +AP +  ++NI  
Sbjct: 5   LGATYVGESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAVVVNITD 61

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++
Sbjct: 62  K---QADYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEI 118

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R         L++ I +     ++ +
Sbjct: 119 AVRTRKGKDLGKFKLDDFIAHIQAEIASRK 148


>gi|58699832|ref|ZP_00374451.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533650|gb|EAL58030.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 236

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 86/270 (31%), Gaps = 39/270 (14%)

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  ++  LG   I ++    P       E    A+    +            P E 
Sbjct: 1   FCDLLKEVYSELGFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAVKEAGLSYELSPGEG 60

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +   +                               K    R  + G        + L
Sbjct: 61  AFYGPKLEF---------------------------VLKDAIGRSWQCGT---LQVDFIL 90

Query: 297 P--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           P  + A + GADG K H V +    +G       ++  ++ GK  +W   +AP +++++ 
Sbjct: 91  PERLGAFYIGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVW---LAPTQLAILT 147

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I            KI   L + G  V  D   E+I  +  +  L   P+  IVG   V+ 
Sbjct: 148 ITN---EADGYATKISNVLKEQGVRVKTDLTNEKISYKIRLHSLNKVPILWIVGKNEVTS 204

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V +++  +  +E  SLE+ I       +
Sbjct: 205 KTVSVRNLGSERQESFSLEKAIELLLKSIN 234


>gi|226291914|gb|EEH47342.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 629

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/449 (13%), Positives = 131/449 (29%), Gaps = 81/449 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     ++  + G    S P   S D L 
Sbjct: 108 QQVLLKGEMLDYYDVSGCFILKPHSYFIWETIQTWFNDKIKKMGVKNCSFPLFVSEDVLN 167

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM                 + +  
Sbjct: 168 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPY--------------YAKWI 213

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              RD        +  R                                 R   K+    
Sbjct: 214 RSHRD--------LPLRLNQWNSVV-------------------------RWEFKNPQPF 240

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +       +V    +            +++++++  I  Q T   
Sbjct: 241 LRTREFLWQEGHTAHLTEAAAREEVLQILEHYAHV-------YEELLAVPVIRGQKTEKE 293

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------ 310
                ++   +   +P     + RGI+ G     G  +S     T +    K        
Sbjct: 294 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPAL 349

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-----KAHDQVCRDAC 365
           +V   S+G+ + R +  ++    D +G++ P  VA  +  +I +         +      
Sbjct: 350 HVWQNSWGL-STRTIGIMVMVHGDDRGLVLPPRVADVQTVIIPVGITAKTTDKERASLYA 408

Query: 366 E--KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
           E   + A +   G  V  D      G +F   +L G PL++  G    +   V    R  
Sbjct: 409 EIDALAAVIEDAGVRVEVDKRDNSPGWKFNDWELRGIPLRLEFGPGESTGHFVTTSRRDI 468

Query: 423 --TGIREDMSLEEVINYASHRFSNNRPVL 449
                +  + + E+           +  L
Sbjct: 469 PGKDGKSTIPISELKTQVPALLETIQADL 497


>gi|189219701|ref|YP_001940342.1| Prolyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189186559|gb|ACD83744.1| Prolyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 512

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/458 (13%), Positives = 137/458 (29%), Gaps = 65/458 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           RRS+ F    Q+    A++A +             +G     P G    + +   +    
Sbjct: 15  RRSEDFPEWYQQVIAAADLAENS----------EVRGCMIIKPWGYALWERIQKELDLRI 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +TG   +  P     +   +                            E    + F   
Sbjct: 65  KKTGHKNVYFPLFIPLEYLQK----------------------------EAEHVEGFAKE 96

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                        +    R E +   G +     L +       +      ++++   SY
Sbjct: 97  CA-----------VVTHHRLE-KGVDGKLHPASPLTEPLVIRPTSETIIGAAFSRWIQSY 144

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   +   +  +R E  P     + EF+      E     +                +
Sbjct: 145 RDLPLLINQWANVVRWEMRPRLFLRTTEFLWQ----EGHTVHASPEEARQEALSIVKLYE 200

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +           S+           E      + ++VG   + G  +S   +  
Sbjct: 201 EFMRGYLALPVIVGEKPESERFPGADNTYTLEAMVQDRKAVQVGTSHFLGQNFSKANNIR 260

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-- 359
           F   +GK  +    S+G+ + R++  +I +  D  G++ P +VAP ++ ++ +   ++  
Sbjct: 261 FLDKEGKMQFAWTSSWGV-STRLIGTLIMAHGDDNGLVLPPTVAPLQVVILPLVKKEEDK 319

Query: 360 -VCRDACEKIYARLSKVGC-----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               D   +I   + K+        V  D      G +       G PL+V +G + VS 
Sbjct: 320 TKILDFAHQIAGEIEKIDFAGEKLRVEVDKREMGGGVKSWEWIKKGVPLRVEIGPQEVSS 379

Query: 414 SKVEIKHRLT--GIREDMSLEEVINYASHRFSNNRPVL 449
             + +K R      RE  + E  +       ++ +  +
Sbjct: 380 RLLTVKRRDKELKEREQFTFEGFLERLPALLADIQKEI 417


>gi|295667617|ref|XP_002794358.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226286464|gb|EEH42030.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 638

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/449 (13%), Positives = 130/449 (28%), Gaps = 81/449 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     ++  + G    S P   S D L 
Sbjct: 109 QQVLLKGEMLDYYDVSGCFILKPHSYFIWETIQTWFNDKIKKMGVKNCSFPLFVSEDVLN 168

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM                 + +  
Sbjct: 169 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPY--------------YAKWI 214

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              RD        +  R                                 R   K+    
Sbjct: 215 RSHRD--------LPLRLNQWNSVV-------------------------RWEFKNPQPF 241

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +       +V    +            +++++++  I  Q T   
Sbjct: 242 LRTREFLWQEGHTAHLTEAAAREEVLQILEHYAHV-------YEELLAVPVIRGQKTEKE 294

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------ 310
                ++   +   +P     + RGI+ G     G  +S     T +    K        
Sbjct: 295 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPAL 350

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-----KAHDQVCRDAC 365
           +V   S+G+ + R +  ++    D  G++ P  VA  +  +I +         +      
Sbjct: 351 HVWQNSWGL-STRTIGIMVMVHGDDLGLVLPPRVADVQTVIIPVGITAKTTDKERASLYA 409

Query: 366 E--KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
           E   + A +   G  V  D      G +F   +L G PL++  G    +   V    R  
Sbjct: 410 EIDALAAVIEDAGVRVEVDKRDNSPGWKFNDWELRGIPLRLEFGPGESAGHFVTTSRRDI 469

Query: 423 --TGIREDMSLEEVINYASHRFSNNRPVL 449
                +  + + E+           +  L
Sbjct: 470 PGKDGKSTIPIPELKTQVPALLETIQADL 498


>gi|71748872|ref|XP_827775.1| prolyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|70833159|gb|EAN78663.1| prolyl-trna synthetase, putative [Trypanosoma brucei]
          Length = 808

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 85/261 (32%), Gaps = 25/261 (9%)

Query: 208 HEFIVLADTGETQ--VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            EF        T+  ++             + +  +I+   + V               E
Sbjct: 438 WEFSHPMPFIRTREFLWQEGHCAWQTEEECSREVLEILDHYAAVYTDLLAVPVVKGKKTE 497

Query: 266 KLFDSLPENKRVSA-------RGIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMG 315
           K   +                RG + G     G  +    +  F+  D  D         
Sbjct: 498 KEKFAGGYYTTTVETYIAAVGRGCQGGTSHNLGQNFGKMFNICFQDPDKNDDSTLIPWQN 557

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-------VCRDACEKI 368
           S+G+ + RV+   I    D +GI+ P  VA  ++ +I +            V  D C+ +
Sbjct: 558 SWGL-STRVIGVTIMVHGDDRGIVLPPRVACLQVVIIPVGITKDTRQEQRNVLLDGCKAL 616

Query: 369 YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L   G  V  D       G +F   +L G P++V +G K +   ++ +  R  G R 
Sbjct: 617 EGELRTAGIRVKADLRNNYSPGWRFNHWELKGVPVRVELGPKEMETKQLSLVLRCDGQRR 676

Query: 428 DMSLE----EVINYASHRFSN 444
            +  +    E ++   +   N
Sbjct: 677 SVPWDGRIAETMSDLLNEIHN 697



 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  MI  +   G Y   P       +V           G  +   P   S   L  
Sbjct: 315 EVITKAEMIEYYDVSGCYIMRPWSFFIWKSVQKFFGSRIEAMGVEDCYFPMFVSKTCLER 374

Query: 82  ESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    +      +   PT E VM   +   I+S+R+LP        
Sbjct: 375 EKDHIEGFAPEVAWVTKAGESDLEVPVAIRPTSETVMYPYYAKWIRSHRDLPVRLNAWNS 434

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R E       +R+REFL ++ +    T E       ++   Y  ++  L
Sbjct: 435 VVRWEFSHPMPFIRTREFLWQEGHCAWQTEEECSREVLEILDHYAAVYTDL 485


>gi|145613850|ref|XP_363396.2| hypothetical protein MGG_01322 [Magnaporthe oryzae 70-15]
 gi|145020862|gb|EDK04991.1| hypothetical protein MGG_01322 [Magnaporthe oryzae 70-15]
          Length = 367

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 105/339 (30%), Gaps = 56/339 (16%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSRE 154
             D         P +      IF S ++SYR+LP  +       R+E+     G+ R R 
Sbjct: 15  TGDAEADEYGLKPMNCPGHCLIFASQLRSYRDLPIRYADFSPLHRNEVSGALSGLTRVRR 74

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEF 210
           F   D + F   P   +    +        +  L L    +   + P    IG     + 
Sbjct: 75  FHQDDGHIF-CRPSQIEEEIRQTLSFVKTTYDTLKLGPYRLVLSTRPEDHYIGELAEWD- 132

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+T       S        P +                     A      +  L DS
Sbjct: 133 --QAETALKAALDSLGERWTLNPGDG--------------------AFYGPKIDIILQDS 170

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-------DHYVQMGSYGIGAMR 323
             +  + +   ++    F    ++ L   A     +G        +  V +    +G++ 
Sbjct: 171 DGKEHQTATVQLD----FQLPKRFELEYQAPPP-ENGDANATALLERPVMIHRAVLGSVE 225

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVGCDV-- 379
            + A++   ++GK   WP  + P ++ ++ +             +  +L   + G +V  
Sbjct: 226 RLMALLIEHYNGK---WPFWLNPRQVMVVTVNDT-ARVVAKAFAVRNQLLGQEEG-EVAA 280

Query: 380 ------FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                   DD    +  +   A   G+   V VG+  V 
Sbjct: 281 SSQLAIDIDDSARSLPLKIREAKSKGYGAIVTVGNHEVD 319


>gi|54309339|ref|YP_130359.1| putative tRNA synthetase [Photobacterium profundum SS9]
 gi|46913775|emb|CAG20557.1| putative tRNA synthetase [Photobacterium profundum SS9]
          Length = 145

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D + H  V +    +G++     ++   + G    W   ++P +  ++NI       
Sbjct: 1   MGEDNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTW---LSPQQAVVMNIT---DSQ 54

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  ++I  +L K G  V  D   E+IG +     L   P  ++ G K V   ++ ++ R
Sbjct: 55  SEYVQEIVKKLQKCGIRVNADLRNEKIGFKIREHTLKRVPYMLVCGDKEVEAGEIAVRTR 114

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  + ++E++ +     S+ +
Sbjct: 115 KGKDLGKLKIDELVAFLQQEISSRK 139


>gi|302348085|ref|YP_003815723.1| threonyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328497|gb|ADL18692.1| threonyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 467

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/456 (16%), Positives = 137/456 (30%), Gaps = 89/456 (19%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              GI  +   G      ++ I+     R G      P + S  L+  SG    Y + M 
Sbjct: 35  LGHGIPLFTIGGGYLRSALSQILVNFHARRGYYIAETPIVSSGALFELSGHMGYYKQNMF 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN---LPFTFYQIQLKFRDELRPR-FGVM 150
                  K     P +      IF S +  +RN   LPF  +++    R E     +G++
Sbjct: 95  VFQVE-GKEYAVKPMNCPFHILIFLSEVTRHRNKVSLPFKVFEVGRVHRLEPSGSVYGLL 153

Query: 151 RSREFLMKDAYSFDLTPEG---SKHSYNKMFVSYLRIFH----------RLGLKSIPMRA 197
           RSR F   DA+   L  +        +++M   Y ++F+          RL L     + 
Sbjct: 154 RSRSFTQDDAHIITLGKDAVNVITSVFDEMITIYSKLFNVEMNPSTVTLRLSLSDKS-KI 212

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +  +G     E       G  +   SK  + +        F        +         
Sbjct: 213 GTDFMGTKDEWEKAEDFLRGALEAIASKYGLRYTAAEGEAAFYGPKIDVLV--------- 263

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----GKDHYVQ 313
                                 +  ++G I +    ++LP       A     G +    
Sbjct: 264 --------------KLGSGQEGKEWQLGTIQF---DFNLPRRFKIFDAAKELYGSEDVYI 306

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYA 370
           +    IG++         ++ G     P  +AP + +++ IKA D+      D    ++ 
Sbjct: 307 IHRALIGSIERFLGAYLDNYKG---RLPFVLAPLQFAVLAIKAGDEFDKRVEDFALSLHR 363

Query: 371 RLSKVGCDVFWDDMGEQI-------------GSQFAVADLLGFPLQVI-VGSKFVSDSKV 416
            L   G    +   GE               G +         P  ++ VG + +    V
Sbjct: 364 ALVAKGFRSGY---GETTRTSLSGDVRLLESGPK---------PAAIVYVGRREIEKGSV 411

Query: 417 EIKHRLTGIREDMSLE--------EVINYASHRFSN 444
            +     G R   S+         + I   + R   
Sbjct: 412 TVSIYEGGSRRQTSVNASDPLGAADAIESLASRLEE 447


>gi|4972787|gb|AAD34790.1|AF136400_4 threonyl-tRNA synthetase [Pseudomonas fluorescens]
          Length = 161

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 9/159 (5%)

Query: 290 FGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               ++LP  + A +   D  + H V +    +G+      ++   ++G    W   +AP
Sbjct: 3   LQLDFNLPIRLGAEYVSEDNSRKHPVMLHRAILGSFERFVGILIEHYEGAFPAW---LAP 59

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +  ++NI        D   ++   L++ G     D   E+IG +     LL  P  +++
Sbjct: 60  TQAVVMNITDK---QADFALEVEKTLNQSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVI 116

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G + V    V ++ R       M + +   + +   S  
Sbjct: 117 GDREVEMQTVAVRTREGEDLGSMPVAQFSAFLAQAVSRR 155


>gi|167949162|ref|ZP_02536236.1| Prolyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 121

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDAC 365
           GK   + MG YGIG  RVVAA IE  HD  GI WP S+APF++++  +K H     R+  
Sbjct: 4   GKAVVMTMGCYGIGVSRVVAATIEQHHDEHGISWPASIAPFQVAICPMKLHKSARVREPV 63

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           E++Y  L  +G +V  DD   + G  FA  +L+G P +V++G + +   +
Sbjct: 64  EQLYTELQALGIEVLLDDRDVRPGFMFADMELIGIPHRVVIGERSLDQGQ 113


>gi|242208348|ref|XP_002470025.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730925|gb|EED84775.1| predicted protein [Postia placenta Mad-698-R]
          Length = 470

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/465 (15%), Positives = 137/465 (29%), Gaps = 75/465 (16%)

Query: 5   KYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           K  L   +E   +A    H+ + +       +  S G Y W P G    + +  ++R E 
Sbjct: 55  KTQLSEYKEFLAEAARREHRKIGKEQKLFFFNDLSPGGYFWRPHGTHVYNTLVELMRSEY 114

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+    +    L                L +R+         +      IF S 
Sbjct: 115 IKRGYQEVVSCNIDLCALAE--------------LQERH----ALKLMNFPGHCLIFDSR 156

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY+ LP    +  +  R+E+     G+ R   F+  D + F + P   +  YN     
Sbjct: 157 DRSYKELPICMAEFWIVHRNEVSGTLTGLTRVCRFVQDDMHVFCM-PSQEEEIYNL---- 211

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                       +        I        +     G T  +           S      
Sbjct: 212 ---------FDFMQH------IMTSSDSTSVSSCRRGLTTTWARLRRGMRLRTSIEESLG 256

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             IS      +     A ++   +   F ++      +AR       F    KY      
Sbjct: 257 QAISRPVTSGRSIPATAPSTARRSTSQF-AMRCAAHFNARTSSSTSSFRL--KYRSADDT 313

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                      V +    +G++    A+I      K   W   ++P +  ++        
Sbjct: 314 ASADKP-PSRPVIIHRAILGSLEWFIAIITEHFARK---WLFWLSPLQALVVPT------ 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF-------------PLQVIVG 407
             +   ++  +LS +      D     +  +   +++  +                 ++G
Sbjct: 364 --EYASEVAQKLSDLRLFADVDSGDNVLPIEIRDSEITQYDFTLTRIAETQCNHYMTVLG 421

Query: 408 SKFVSDSKVEIKHRL---TGIREDM-SLEEVINYASHRFSNNRPV 448
            + +    V I+ R    T  +  M  LEEV+        N+R +
Sbjct: 422 QEELGGRSVNIRDRDDISTKAKGHMIPLEEVVQKLIA-LKNSRSL 465


>gi|312137261|ref|YP_004004598.1| prolyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224980|gb|ADP77836.1| prolyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 466

 Score =  146 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R +++G I   G  +S     TF+  +GK  +     YG+ + RV+A+VI    D 
Sbjct: 209 MPDGRTLQIGTIHNLGQNFSKTFDITFETEEGKHEHAYQTCYGV-SDRVIASVISIHGDE 267

Query: 336 KGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           KG+  P  +AP +I ++ I  K  ++   + C+ +  +L +    V  DD   + G +F 
Sbjct: 268 KGLCLPPKIAPIQIVIVPIIFKETEEEVLEFCKNVEKKLKEGKLKVHLDDRDIRAGRKFY 327

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRFSN 444
             ++ G PL++ +G K +  +KV +  R +G + D+  ++  +         
Sbjct: 328 EWEMKGIPLRIEIGPKDIEKNKVVVVRRDSGEKMDVKFDDNFVENIKSIIEK 379



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 20/200 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  IL+    +AEI                KG+++WLP G K    +   +R+  +
Sbjct: 4   FSEWYHEILE----NAEIIDS---------RYPVKGMHAWLPYGFKIRKKIIETLRKLLD 50

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
                E+  P L   + L  ES     +  E+  +      +  + +   PT E  M  +
Sbjct: 51  E-DHDEVLFPLLIPEEELMKESIHIKGFEDEVYWVTHGGKAKLKRKLALRPTSETAMYPM 109

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNK 176
           F   I+++++LP   YQI   FR E +    ++R RE    K+A++   T EG++    K
Sbjct: 110 FSLWIRTHKDLPLKVYQIVNTFRYETKHTRPLIRIREITTFKEAHTVHKTLEGAEKQVKK 169

Query: 177 MFVSYLRIFHRLGLKSIPMR 196
               Y   F  LG+  +  +
Sbjct: 170 AINIYKTFFDSLGIPYLITK 189


>gi|323457093|gb|EGB12959.1| hypothetical protein AURANDRAFT_18779 [Aureococcus anophagefferens]
          Length = 606

 Score =  146 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 122/403 (30%), Gaps = 55/403 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG     P G    D +   +      +GA     P L       +              
Sbjct: 141 KGCMVIKPWGMAVWDRLRDELDGRIKASGAENAYFPLLIPRSFLAKE------------- 187

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                         E    + F                +    R     + G+       
Sbjct: 188 -------------AEHCHVEGFAKECA-----------VVTHHRLAADGKGGLEPDPAAE 223

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK----SIPMRAESGPIGGDLSHEFIV 212
           + +      T E        MF  ++     L LK    +  +R E        S EF+ 
Sbjct: 224 LDEPLIIRPTSETM---IWHMFGKWINSHRDLPLKINQWANVVRWEMRTRPFLRSSEFLW 280

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                E     +          E  D    +  + +         +  +           
Sbjct: 281 Q----EGHTAHATRDEALATAEEMLDVYAEVVEHFLAVPVVRGAKSAIERFAGADETYTI 336

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E    +   ++ G   + G  ++      F+  D K   V   S+G+ + R++ A++ + 
Sbjct: 337 EALMPNGWALQSGTSHFLGQNFARAFDVQFQNKDAKRELVWATSWGV-STRLLGALVMTH 395

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWDDM-GE 386
            D  G++ P  VAP +++++ I   +     +      + + A    +G  V  D+    
Sbjct: 396 SDDAGLVLPPRVAPVQVAVVPITRKNDDAGTEAVDALVDGLVAECKALGVRVKVDERPNM 455

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           + G++F   +  G PL+V VG +  ++  V +  RL G +  +
Sbjct: 456 RPGAKFFEWERKGVPLRVEVGPRDAAEGVVVVASRLGGEKRSV 498


>gi|297620635|ref|YP_003708772.1| Prolyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375936|gb|ADI37766.1| Prolyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 507

 Score =  146 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 149/448 (33%), Gaps = 82/448 (18%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADL 79
           ++ +++   + ++S   G     P G    +N+ + + +    TG   +  P     + L
Sbjct: 22  YQQVIKAADMAENSPVRGCMVIKPWGFGIWENIKSTLDQMIKETGHENVYFPLFIPLSFL 81

Query: 80  WVESGRYDSYGKEMLRLAD--------------RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+   + + KE   +                  ++ +I  PT E ++ D F   ++SY
Sbjct: 82  EKEAAHVEGFAKECAVVTHHRLEEKDGKLIPTGELEEPLIVRPTSETIIGDSFSRWVESY 141

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP    Q     R E+RPR   +R+ EFL ++ ++   T + +K    KM   Y R+ 
Sbjct: 142 RDLPLLINQWANVVRWEMRPRI-FLRTSEFLWQEGHTVHATKQEAKEETLKMLEVY-RVL 199

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               L +IP+       G   + E    A++  T            +    + +      
Sbjct: 200 AEEVL-AIPVIL-----GEKSAGERFPGAES--TYTLEMMMQDRKALQGGTSHY------ 245

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + + +             +L  +   +  V+ R I  G I   G              
Sbjct: 246 --LGQNFARAQGIQFSGKEGELEYAYTTSWGVTTRLI-GGMIMCHG------------DD 290

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG     ++                          P  +    I +I     ++      
Sbjct: 291 DGLRIPPRVA-------------------------PKQI--VIIPVIPKPELEEEVLAFA 323

Query: 366 EKIYARLSKVG-----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           EK+  ++           V  D    + G +       G P+++ +G + +    V +  
Sbjct: 324 EKVKQQIISQMFYGKPISVHIDKRDRRGGEKNWEWVKKGVPVRIEIGPRDIESDSVMLAR 383

Query: 421 RLTG--IREDMSLEEVINYASHRFSNNR 446
           R  G   +E +SLE +     +  +  +
Sbjct: 384 RDRGHKEKEKVSLETLGAIIPNLLNEIQ 411


>gi|84393193|ref|ZP_00991956.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376159|gb|EAP93044.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 147

 Score =  146 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G D + H  V +    +G++     ++   + G    W   +AP +  ++ I    
Sbjct: 1   ATYVGEDNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTW---LAPEQAIVMGITDKQ 57

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ +
Sbjct: 58  S---EYVQEIAKKLQKSGFRVKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAV 114

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R         +++ I+Y     SN +
Sbjct: 115 RTRKGKDLGKFKVDDFISYIQAEVSNRK 142


>gi|118102209|ref|XP_001233746.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 510

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 20  IASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           +  H+ + +       H  S G   +LP G    + +   IR E    G  E+  P + S
Sbjct: 260 LRDHRRIGKEQELFFFHALSPGSCFFLPRGAHIYNTLVDFIRSEYQVRGFNEVVTPNIFS 319

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW  SG +  Y   M        + +   P +      +F    +S+R LP       
Sbjct: 320 PRLWELSGHWQHYSAHMFSFTA-GTETLSLKPMNCPAHCLMFAHRPRSWRELPLRLADFG 378

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPE 168
           +  R+E      G+ R R F  +DA+ F    +
Sbjct: 379 VLHRNEPPGSLTGLTRVRRFQQEDAHIFCALEQ 411



 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLG 399
           P  ++P +  +I      +       +++A L + G     D D G  +G +   A L  
Sbjct: 417 PLWLSPLQAMVIPQAPDAEG---YAREVHAMLRRDGVMADLDADAGATLGRKIRRAQLTH 473

Query: 400 FPLQVIVGSKF 410
           +  Q+  G + 
Sbjct: 474 YNFQLGKGERG 484


>gi|119953193|ref|YP_945402.1| prolyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|119861964|gb|AAX17732.1| prolyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 501

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 8/178 (4%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  ++      F+   G+  YV   S+G+ + R++ A+I    D 
Sbjct: 229 MQDKKALQAGTSHYLGLNFAKAFDVKFQNKKGEMDYVFATSWGV-STRLIGALIMVHSDS 287

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGS 390
           KG+I P  +AP +I ++ I   D        +    I+  L +    V  D D+    G 
Sbjct: 288 KGLILPPKIAPIEIIIVPIFKRDDEVNKKIIEYATTIFNILKEAKFRVELDRDIKNSPGF 347

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTGIREDMSLEEVINYASHRFSNNR 446
           +FA  +L G P+++ VGS  +    V +  R      +  +S++E+ +   H     +
Sbjct: 348 RFAAVELKGIPIRIEVGSNDILMDCVTVARRDQDKNSKYQVSVKELPSKMRHELETMQ 405



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 20/190 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++L I+Q+    A++  +  +          KG    +P G    + + +I+  +  
Sbjct: 25  FSKWYLDIVQK----AKLVDYSPI----------KGCMVIMPYGYAIWEQIKSILDNKFK 70

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG      P L   +    E      +  E+  +     +   + ++  PT E ++ ++
Sbjct: 71  ETGHENAYFPLLIPYEFLEREKEHVKGFSPELAVITTAGGEELAEPLVLRPTSETIIWNM 130

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   IKSYR+LP    Q     R E R R   +R+ EFL ++ ++   T   +      +
Sbjct: 131 YSKWIKSYRDLPVKINQWANIVRWEKRTR-PFLRTTEFLWQEGHTAHETAGEALEETLFI 189

Query: 178 FVSYLRIFHR 187
              Y R    
Sbjct: 190 LNLYKRFIED 199


>gi|297816202|ref|XP_002875984.1| hypothetical protein ARALYDRAFT_323549 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297321822|gb|EFH52243.1| hypothetical protein ARALYDRAFT_323549 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 496

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 74/194 (38%), Gaps = 25/194 (12%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RG++       G  ++      +    G+   V   S+   + R +  +I    D K
Sbjct: 210 NTGRGVQGATSNCLGQNFAKTYEINYVDEKGETATVWQNSW-TYSTRTIGVMIMIHGDDK 268

Query: 337 GIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           G+I P  VAP ++ +I +   +   Q   DAC    + L + G     D   E   G ++
Sbjct: 269 GLILPPKVAPLQVVVIAVPCKNANIQRIYDACTATVSALCEAGIRAEEDLGDEYTPGWKY 328

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVE------------------IK--HRLTGIREDMSLE 432
           +  ++ G PL++ +G + + + +V                   ++   R  G++ED+   
Sbjct: 329 SDWEMKGVPLRIEIGPRDLENDQVMKGLVFTEKTVMFGLNMELVRTVRRDNGVKEDIPRG 388

Query: 433 EVINYASHRFSNNR 446
            ++          +
Sbjct: 389 SLVENVKELLEKIQ 402



 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS-VP-TLQSADLWVESGRYDSYGKEML 94
            G Y   PL     + +      E  +   ++    P  +    L  E+   + +  E+ 
Sbjct: 33  SGCYFPRPLTMAIWEIMQIFFDAEMKKMKVVKNWDFPLFVPPGVLEKENEHIEGFAPEVG 92

Query: 95  RLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            +        +  +   PT E V+   F   +K YR+LP            E       +
Sbjct: 93  WVTKSIKSDLEVPIATRPTSETVLYTYFSKWVKGYRDLP-----------WECNNPTPFI 141

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           RSREFL ++ +S   T   +     ++   + RI+   
Sbjct: 142 RSREFLWQEGHSAFATKAEADEELLQILELFRRIYEEF 179


>gi|282162921|ref|YP_003355306.1| truncated threonyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282155235|dbj|BAI60323.1| truncated threonyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 477

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 158/448 (35%), Gaps = 51/448 (11%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRTGA 66
           +P ++E P    +  H+L+   G       G + + P G    + +     +   NR  A
Sbjct: 61  MPPMKEPPSIKIMQGHELV---GYEPSSDSGNFRFYPKGYLIFELLRDWAYDIAINRFKA 117

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           I++  P L   D      +  ++ +    +   D  +K  I     +  +  I +    S
Sbjct: 118 IQVDSPLLFDWDDPQIKEQAGTFHERHYTVKAPDHPEKDFILRFAGDFGLFKIMKDATIS 177

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YRNLP   Y+    FR E      G+ R R F M D + F    +   + Y +++ +Y  
Sbjct: 178 YRNLPLRMYEFSKSFRYERDGELSGLKRLRAFHMPDIHCFCRDIDEGWNEYQELYRNYAD 237

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G++   +                          F   D       S   D     
Sbjct: 238 LCDASGVEYAVV--------------------------FRIVDSFYLQNKSRIADLVKYS 271

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           +  + VE  +      +  +  +  DS     ++S   ++V     +G  Y+        
Sbjct: 272 NTPAFVEVLSDMKHYWAVKNEFQGVDSTRSCIQLSTVQLDVKDAAVYGIDYT-------- 323

Query: 304 GADGKDHYVQMGSYGIGAMRVV-AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            +DGK     +    IG++     +++E +   +    P  ++P ++ +I +    +   
Sbjct: 324 DSDGKKKGCIICHSSIGSIERWYYSILEEALKHETPTLPAWLSPTQVRIIPV---SEKQL 380

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + C+ +     +V  D       + +  + A A +   P   +VG K V      +  R 
Sbjct: 381 NYCKYLDIDGVRVDVDDSD----DTLSKKIARASMEWVPYVAVVGDKEVESGLFSVSIRQ 436

Query: 423 TGIREDMSLEEVINYASHRFSNN--RPV 448
           +G R  M+ +E+      + +    RP+
Sbjct: 437 SGKRVSMTRDELALEVKKKCAGRPYRPL 464


>gi|300176086|emb|CBK23397.2| Prolyl-tRNA synthetase [Blastocystis hominis]
          Length = 546

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R ++       G  +S     +++   G+   V   S+G+   R +  +I    D +G++
Sbjct: 265 RAVQAATSHCLGQNFSRMFGISYETDSGERKLVWQNSWGLT-TRSIGVLIMVHGDDRGLV 323

Query: 340 WPDSVAPFKISLI---NIKAHDQVC---RDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
            P  VAP +  ++   N K  +      R A   +  RL   G  V  D       G +F
Sbjct: 324 LPPRVAPIQAVIVYFHNSKTSEADVDRLRRAARDLGERLRAAGLRVEVDSRENYNPGWKF 383

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---REDMSLEEVINYASHRFSNNRPVL 449
           A  +  G PL++ +G + +   +V    R       +  ++ E++   A       +  L
Sbjct: 384 ADWEQKGVPLRIELGPRDLDAQQVVFARRDDLTPAGKRTVAWEKIEEEAREALETIQAAL 443



 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
            G Y   PL     + +   +  +   +G      P   S   L  E    + +  E+  
Sbjct: 75  SGCYILRPLAYNIWERIQEFLDAKIKASGVKNAYFPMFVSRGALEKEKEHVEGFAPEVAW 134

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +         + +   PT E +M   +   I+ +R+LP    Q     R E +     +R
Sbjct: 135 VTRSGSSELQEPVAIRPTSETIMYPAYARWIRGHRDLPLRLNQWTNVVRWEFKHPTPFIR 194

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +REFL ++ +S   T E ++    ++   Y R++  L
Sbjct: 195 TREFLWQEGHSAFATKEEAEKEVLEILDYYARVYEEL 231


>gi|149191774|ref|ZP_01870012.1| threonyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148834354|gb|EDL51353.1| threonyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 146

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   + +    V +    +G++     ++   + G    W   ++P +  ++NI     
Sbjct: 1   TYVDENNERQVPVMIHRAILGSLERFIGILIEEYAGFFPTW---LSPEQAVIMNITDKQS 57

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++
Sbjct: 58  ---DYVQEVTQKLQKSGIRAKADLRNEKIGFKIREHTLKRIPYMLVCGDQEMEAGEIAVR 114

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R         +++ I+Y     S+ +
Sbjct: 115 TRKGKDLGKFKVDDFISYIQAEVSSRK 141


>gi|282856964|ref|ZP_06266215.1| proline--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282585125|gb|EFB90442.1| proline--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 478

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 7/176 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   + G  ++   +  F+  +G   Y    S+G+ + R++ A+I +  D  G+I
Sbjct: 220 KALQAGTSHFLGQNFAKAFNIQFQDQNGAMQYAWTTSWGV-STRMIGAIIMTHSDNDGLI 278

Query: 340 WPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKV--GCDVFWDDMGE-QIGSQFA 393
            P  VAP K  ++ I   D    +      ++  RL+ V     V  D+    +   +F 
Sbjct: 279 LPPRVAPVKAVILPISKDDATFAELDAKAHELANRLNSVLGPLTVRVDEQNHMRPADRFF 338

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
                G PL++ +G K  +   V    R TG++ED+  E +    +    + +  L
Sbjct: 339 YHLQKGVPLRLELGEKDAAAGTVRAVRRDTGVKEDLKWETLAERVAAILEDIQKSL 394



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 24/260 (9%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+++L I++     AE+A +  +           G     P G    +++ A   +    
Sbjct: 13  SQWYLDIIKA----AELADYAPVR----------GCMVVRPTGYAIWEDLQAKFDKAFKE 58

Query: 64  TGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIF 118
           TG +    P L  +  L  E+   + +  E   +     +  ++ ++  PT E V+  ++
Sbjct: 59  TGHVNAYFPLLIPSSFLRKEAEHVEGFAPECAVVTHAGGEELEEPLVIRPTSETVIGAMY 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              ++S+R+LP    Q     R E RPR   +R+ EFL ++ ++   T   ++    KM 
Sbjct: 119 SKWVQSWRDLPLLINQWANVLRWEKRPRL-FLRTSEFLWQEGHTAHATAAEAEEETVKML 177

Query: 179 VSYLRIFH-RLGLKS---IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             Y +I    + L     +    E  P   D      +++DT   Q   S         +
Sbjct: 178 NVYAKIMKEDMALPVVEGVKSEGERFPGALDTYTCETMVSDTKALQAGTSHFLGQNFAKA 237

Query: 235 ENTDFDDIISLNSIVEQWTA 254
            N  F D           + 
Sbjct: 238 FNIQFQDQNGAMQYAWTTSW 257


>gi|156089629|ref|XP_001612221.1| tRNA synthetase class II core domain containing protein [Babesia
           bovis]
 gi|154799475|gb|EDO08653.1| tRNA synthetase class II core domain containing protein [Babesia
           bovis]
          Length = 439

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 102/196 (52%), Gaps = 10/196 (5%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           + + G++   S GI + LP+G++ ++ +  +I  E +R GA E+ +P L S+D   E  R
Sbjct: 48  LRKPGILTHMSPGISTVLPIGKRIVNRIERVIHVEMSRIGAKEVELPMLLSSDTINE--R 105

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDEL 143
            + +G+E+  L DRN K     PT EE++  +        S RNLP   YQI  KFRDE 
Sbjct: 106 RNEFGRELFSLTDRNGKHYDLCPTCEELICRMLDKALSPLSKRNLPIYLYQIGRKFRDEA 165

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP    MR REF+MKDAYSF    + +   YNK   +Y RIF  L L    +        
Sbjct: 166 RPCNSNMRCREFIMKDAYSFHSDKDSAAMDYNKFKQAYERIFTLLELSFDTVTI------ 219

Query: 204 GDLSHEFIVLADTGET 219
           GD  HEF  +    +T
Sbjct: 220 GDTEHEFRAMLPNKKT 235



 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E+ HIF  G   +      ++G     H V + SYGIG  R++ A      D +GI  P 
Sbjct: 238 EIAHIFQLGDAITTEAGLKYEGEGRMKHPVYLNSYGIGIHRLLQAAASQHADSEGIRLPQ 297

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP+ +++I    + +    A   IY  LSK G D F D     I  + +    +G P 
Sbjct: 298 IIAPYDVAVIPCDENSE---QASADIYTLLSKRGIDTFLDTRKAPINQRVSDMMNIGIPH 354

Query: 403 QVIV 406
            V V
Sbjct: 355 IVYV 358


>gi|162452041|ref|YP_001614408.1| prolyl-tRNA synthetase [Sorangium cellulosum 'So ce 56']
 gi|161162623|emb|CAN93928.1| proS [Sorangium cellulosum 'So ce 56']
          Length = 518

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/443 (12%), Positives = 129/443 (29%), Gaps = 63/443 (14%)

Query: 23  HKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           ++ ++R   + + S   G     P G    +N+   +      TG      P        
Sbjct: 23  YQQVVRAADLAESSPVRGCMVIKPWGYAIWENIQRELDSMFKATGHKNAYFPLFIPKSFL 82

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            +                            E    + F                +    R
Sbjct: 83  EK----------------------------EAEHVEGFAKECA-----------VVTHHR 103

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK----SIPMR 196
               P  G++   +  +++      T E         F S+++ +  L L     +  +R
Sbjct: 104 LVPGPGGGLIPDPQARLEEPLIVRPTSETI---IGAAFASWVQSYRDLPLLINQWANVVR 160

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E        + EF  L   G T      +  +  +              ++        
Sbjct: 161 WELRTRLFLRTAEF--LWQEGHTAHASEAEAREETLRMLGVYATFARDFMAMPVLEGPKT 218

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A+         +    E      + ++ G   + G  ++      F+  +  + +    S
Sbjct: 219 ASERFPGAVDTY--AIEAMMQDRKALQAGTSHFLGQNFAKASGIKFQTKEETEEHAWTTS 276

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLS 373
           +G+ + R+V  +I +  D  G++ P  +AP  + ++ +   D       +  + +   L 
Sbjct: 277 WGV-STRLVGGLIMTHSDDDGLVLPPRLAPAHVVILPVYRGDDTRAKIDEYIDGLAKELR 335

Query: 374 KVG-----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIR 426
                    +V  D    + G +       G PL++ +G + V      +  R      +
Sbjct: 336 AQRFGERRVEVEIDRRDIRGGDKQWEWVKKGVPLRIEIGPRDVDAGVAMVMRRDRSPKDK 395

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             M+  E++   +    + +  L
Sbjct: 396 SSMARGELVGRVTEILGDIQATL 418


>gi|156937646|ref|YP_001435442.1| Ser-tRNA(Thr) hydrolase [Ignicoccus hospitalis KIN4/I]
 gi|156566630|gb|ABU82035.1| Ser-tRNA(Thr) hydrolase [Ignicoccus hospitalis KIN4/I]
          Length = 462

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 143/439 (32%), Gaps = 52/439 (11%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           L     +    G   +   G      +  ++ +   R G   +  P +    L+  +G  
Sbjct: 28  LGAEYGYYVGAGNPLFSVGGGVLRTALKHVLHKYHARKGYYVVETPIIARTTLYELTGHL 87

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR---NLPFTFYQIQLKFRDEL 143
             Y + M  L    D+     P +      IF + ++ Y     LPF  ++     R E+
Sbjct: 88  KFYKENMFLLNIEGDEY-AIKPMNCPFHVLIFMNLLQKYSSKVKLPFKIFETGTVHRYEI 146

Query: 144 RPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G++R R F   DA+ F    E  + S  ++F     ++ +  L  IP+ +E+  +
Sbjct: 147 AGALRGLLRVRAFTQDDAHLFS-PEEHVEASLMEVFEMMKDVYEK--LFYIPVTSETVKL 203

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              LS +    +  GE +     +  +F         +++     I        AA    
Sbjct: 204 RLSLSDK----SKIGE-EFMGEPEMWEFAEEKLFKVAEEVKRKYGIEFFAEEGEAAFYGP 258

Query: 263 HNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATF---KGADGKDHYVQMGS 316
             + +            +  ++G     F    ++ L           A+       +  
Sbjct: 259 KLDVVVYEEG------GKEWQIGTAQFDFNLPKRFKLHELIKETHGLDAN----LYMIHR 308

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC----RDACEKIYARL 372
             +G++     +      G     P S+AP ++ +I I   ++      ++   K+   L
Sbjct: 309 ALLGSLERFLGIYLEMFKG---RLPFSLAPLQVLVIEITTGNEEVDKKIKELSSKVVNSL 365

Query: 373 SKVGCDVFWDDMGEQ-IGSQFAVADLLGF------PLQVIVGSKFVSDSKVEIK----HR 421
            +    V      +  +       D+         PL + +G +   +S V  +    ++
Sbjct: 366 KENEIRVASLTSTKTHLSR-----DVRKVESTVKPPLILYIGGREAEESAVVARPYDHNK 420

Query: 422 LTGIREDMSLEEVINYASH 440
               +  +  +EV+     
Sbjct: 421 RRREQMKLKADEVLKVIEE 439


>gi|52631983|gb|AAU85385.1| glutaminyl-tRNA synthetase [Sus scrofa]
          Length = 337

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 11/177 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+     G+  +    S+G+   R +  +     D 
Sbjct: 57  SGRAIQGATSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLT-TRTIGVMTMVHGDN 115

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
            G++ P  VA  ++ +I     + +  +        C     RL  V   V  D      
Sbjct: 116 MGLVLPPRVACVQVVVIPCGITNALAEEDRDALMAKCHDYERRLVSVNIRVRVDLRDNYS 175

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G +F   +L G P+++ VG + +   +     R TG +  ++  E          +
Sbjct: 176 PGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTLAENEAETKLHALLED 232


>gi|27981827|gb|AAM94642.1| prolyl tRNA synthetase [Spironucleus barkhanus]
          Length = 299

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 73/176 (41%), Gaps = 3/176 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++   I + G K++   +  F   +    + +M   GI + R +A  +    D 
Sbjct: 40  MPCGKVLQTAGIHFLGQKFAKVFNIKFIDQNNTQQFAEMTCAGI-STRALACALSVHGDQ 98

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           KG++ P  +A +++ L+    +        ++I   L   G   F+DD  + +G +    
Sbjct: 99  KGLMLPSLIAMYQVVLVPCGKYGDDLVLKMKEIQQTLKAAGIRSFFDDSKKSMGEKIFHW 158

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDMSLEEVINYASHRFSNNRPVL 449
           ++ G PL++ +G + +         R TG   ++   ++++   A  + +     L
Sbjct: 159 EMKGVPLRIELGPRDLESGDFVAICRDTGKDGKQVFKVQDIAAVARDQLAQYDSRL 214


>gi|149040965|gb|EDL94922.1| glutamyl-prolyl-tRNA synthetase, isoform CRA_c [Rattus norvegicus]
          Length = 1460

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 97/316 (30%), Gaps = 33/316 (10%)

Query: 160  AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSH------EFI 211
             Y           S    F + ++   +LG++    P+    G +  + +H      E  
Sbjct: 1046 CYILRPWSYSIWESIKDFFDAEIK---KLGVENCYFPIFVSQGALEKEKNHIADFAPEVA 1102

Query: 212  VLADTGETQVFCS---KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
             +  +G+T++      +   +  +      +        I              H +   
Sbjct: 1103 WVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFL 1162

Query: 269  DSLPENKRVSARGI--------EVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYG 318
             +     +              E     + G  +S      F+     G+  +    S+G
Sbjct: 1163 RTREFLWQEGHSAFATFEEAADEGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWG 1222

Query: 319  IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYAR 371
            +   R +  +I    D  G++ P  VA  ++ +I         +   +     C +   R
Sbjct: 1223 LT-TRTIGVMIMVHGDNMGLVLPPRVASVQVVVIPCGITNTLSEEDREALMAKCNEYRRR 1281

Query: 372  LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L         D       G +F   +L G P+++ VG + +   +     R TG +  ++
Sbjct: 1282 LLGADIRARVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIA 1341

Query: 431  LEEVINYASHRFSNNR 446
             +E  +       + +
Sbjct: 1342 EKEAESKLKGVLEDIQ 1357



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 9/171 (5%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      +++      E  + G  
Sbjct: 1016 LEAKKEENLAEWYS-QVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVE 1074

Query: 68   EMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHI 122
                P   S   L  E      +  E+  +         + +   PT E VM   +   +
Sbjct: 1075 NCYFPIFVSQGALEKEKNHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 1134

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
            +S+R+LP    Q     R E +     +R+REFL ++ +S   T E +   
Sbjct: 1135 QSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAADE 1185


>gi|148381445|ref|YP_001255986.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           3502]
 gi|153934131|ref|YP_001385820.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|153935851|ref|YP_001389227.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|148290929|emb|CAL85065.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152930175|gb|ABS35675.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|152931765|gb|ABS37264.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
          Length = 545

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 4/216 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +F I +  T +           +           +++ +       K     G  +G 
Sbjct: 331 MNNFMIGANETGYHYENVNYERDFKGIVGEFRKIHKYSKCILCGD---KLEVNEGFVIGE 387

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           I            ATF    GK     +    +   ++++  IE + D  GI+WP   + 
Sbjct: 388 IKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWTIEQNKDELGIVWPMETSA 447

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           FK+ +      D+      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ V
Sbjct: 448 FKVIVTIANVKDEQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITV 507

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G K + ++ VEIK R +  ++++ ++++        
Sbjct: 508 G-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 115/275 (41%), Gaps = 22/275 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +                 ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIPYVNNLE----------------EVSEKNNGFILNFNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L  + +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQILR-EYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G+  +   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLHIVACKSCNYGNEVNRASSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           D      + E           +     F  +P  K
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRK 253


>gi|322807831|emb|CBZ05406.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 545

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
             +K     G  +G I            ATF    GK     +    +   ++++ VIE 
Sbjct: 373 CGDKLEVNEGFVIGEIKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWVIEQ 432

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + D  GI+WP   + FK+ +      D+      EKIY+ L  +G     DD  E+ G +
Sbjct: 433 NKDELGIVWPMETSAFKVIVTIANVKDEQQFKVGEKIYSSLVNIGIGTILDDRKERAGVK 492

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  ADL G P+++ VG K + ++ VEIK R +  ++++ ++++        
Sbjct: 493 FKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 115/275 (41%), Gaps = 22/275 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+  D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  I+   
Sbjct: 1   MKLSKTLVHSLREDLADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKIVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +                 ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIPYVNNLE----------------EVSEKNNGFILNFNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L  + +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQILR-EYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G++ +   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSHIVACKSCNYGNEINRASSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           D      + E           +     F  +P  K
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRK 253


>gi|170756076|ref|YP_001783145.1| putative prolyl-tRNA synthetase [Clostridium botulinum B1 str.
           Okra]
 gi|169121288|gb|ACA45124.1| putative prolyl-tRNA synthetase [Clostridium botulinum B1 str.
           Okra]
          Length = 545

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 4/216 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +F + +  T +           +            ++ +       K     G  +G 
Sbjct: 331 MNNFMVGANETGYHYENVNYGRDFKGIVGEFRKIHRDSKCILCGD---KLEVNEGFVIGE 387

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           I            ATF    GK     +    +   ++++  IE + D  GI+WP   + 
Sbjct: 388 IKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSA 447

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           FK+ +      D+      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ V
Sbjct: 448 FKVIVTIANVKDEQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITV 507

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G K + ++ VEIK R +  ++++ ++++        
Sbjct: 508 G-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 115/275 (41%), Gaps = 22/275 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +                 ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIPYVNNLE----------------EVSEKNNGFILNSNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L  + +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQILR-EYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G+  +   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLHIVACKSCNYGNEINRASSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           D      + E           +     F  +P  K
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRK 253


>gi|168178808|ref|ZP_02613472.1| putative prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226950957|ref|YP_002806048.1| putative prolyl-tRNA synthetase [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670058|gb|EDT82034.1| putative prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226841905|gb|ACO84571.1| putative prolyl-tRNA synthetase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 545

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 84/216 (38%), Gaps = 4/216 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +F + +  T +           +            ++         K     G  +G 
Sbjct: 331 MNNFMVGANETGYHYENVNYQRDFKGIVGEFRKIHKDSKCTLCGD---KLEVNEGFVIGE 387

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           I            ATF    GK     +    +   ++++  IE + D  GI+WP   + 
Sbjct: 388 IKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWTIEQNKDELGIVWPMETSA 447

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           FK+ +      D+      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ V
Sbjct: 448 FKVIVTIANVKDEQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITV 507

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G K + ++ VEIK R +  ++++ ++++        
Sbjct: 508 G-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 116/275 (42%), Gaps = 22/275 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +                 ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIPYVNNLE----------------EVSEKNNGFILNSNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L  + +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQILR-EYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G+ ++   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLRIVACKSCNYGNEVNRASSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           D      + E           +     F  +P  K
Sbjct: 219 DYQIEKDLKELNKIETLDIKTIEELGEFFKVPYRK 253


>gi|212697112|ref|ZP_03305240.1| hypothetical protein ANHYDRO_01678 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675887|gb|EEB35494.1| hypothetical protein ANHYDRO_01678 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 134

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R ++A+IE ++D  GIIWP  VAPF+  +  +  + +  +   EKIY  L 
Sbjct: 1   MGSYGIGITRSISAIIEQNYDDNGIIWPTKVAPFEAWITLVNKNKEDQKQLAEKIYESLL 60

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V  DD  E+ G +F   DL+G P ++ VG K  SD  VE   R       MS +E
Sbjct: 61  DQGIEVMLDDRKERAGVKFNDRDLVGCPYRITVG-KDASDDIVEFSKRSDMENLKMSSDE 119

Query: 434 VINYASHRFSNN 445
            I         +
Sbjct: 120 AIEKIVKSIKED 131


>gi|187776553|ref|ZP_02993026.1| hypothetical protein CLOSPO_00065 [Clostridium sporogenes ATCC
           15579]
 gi|187775212|gb|EDU39014.1| hypothetical protein CLOSPO_00065 [Clostridium sporogenes ATCC
           15579]
          Length = 545

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 1/171 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
             NK     G  +G I            ATF    GK     +    +   ++++  IE 
Sbjct: 373 CGNKLEINEGFVIGEIKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWAIEQ 432

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + D  GI+WP   + FKI +      D+      E+IY+ L   G     DD  E+ G +
Sbjct: 433 NKDELGIVWPMEASAFKIIVTIANEKDEQQFKVAEEIYSNLVNSGISTILDDRKERAGVK 492

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  ADL G P+++ VG K + ++ VEIK R    ++++ ++++        
Sbjct: 493 FKDADLWGIPIRITVG-KNIKENNVEIKLRNLKEKKEIPIDQLQESIKSLL 542



 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 113/277 (40%), Gaps = 24/277 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +  L+E P D ++ S KL+L+ G+I +   G+Y++ PLG   L+N+  II + 
Sbjct: 1   MRLSKTLVHSLREYPADLDMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLENIQKIIEDN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV-MTDIFR 119
             + G  ++S+P ++                   +   + +   I     E +   +  +
Sbjct: 61  SKKNGGFQISIPYIKD-----------------FQDVSKKNNEFILDSNEENLRFINFLK 103

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +++ SY+ LP  FY+   +   + +   G+M  ++ L K+ +   L  E +K +  ++  
Sbjct: 104 NNVTSYKQLPLFFYENNTEINYKGKNNLGIMCGKQVL-KEHFYMMLDEENNKFNKEELIK 162

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y  IF  + L+   +  E      D + +FI+  + G++ +   K        +     
Sbjct: 163 LYKDIFKIMNLQYHIVEDEL-----DGTIKFIIYDNIGDSHIVECKSCNYGNEINRALSI 217

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            D      + E           +     F  +P  K 
Sbjct: 218 PDYNIEKDLKELNKIETPDIKTMEELGEFFKVPYRKL 254


>gi|156097506|ref|XP_001614786.1| prolyl-t-RNA synthase [Plasmodium vivax SaI-1]
 gi|148803660|gb|EDL45059.1| prolyl-t-RNA synthase, putative [Plasmodium vivax]
          Length = 476

 Score =  141 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 150/433 (34%), Gaps = 48/433 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M     F  I  +  + +   + +L+ R   I   + G+Y+ LPLG K+++ + + +   
Sbjct: 1   MGSESIFNKICNDTDKQSGDKASELLQRANYIRDVN-GLYNLLPLGYKSIEKIISFLNTH 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------------------ADRN 100
             R  +  + +  LQ+   W  S R   Y  E L +                        
Sbjct: 60  LKRVNSHCLFMSILQAKKWWNISDRSKLYSDEFLHVYKQKQQKGDSNKGTEAVMGKKKME 119

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSY---RNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D  +I  PT EE    +           ++LP   +Q   KFR+E R    + +S+EFLM
Sbjct: 120 DDGLILSPTCEEQAISLINQVYNENIPAKSLPLLIHQFNYKFRNEKRLEKTLFKSKEFLM 179

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADT 216
           KD YSF         +Y      Y ++F  L L   +  + +   +    SHEF VL   
Sbjct: 180 KDGYSFHSNDICLSETYEAYKECYEKVFSHLKLPFKVTKKRKMDKMNALESHEFQVLCRD 239

Query: 217 GE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN--EKLFDSLPE 273
           G+  +        D+        + +  +  S +   +        ++   +  +D    
Sbjct: 240 GKYKEAAHIFKLGDYYSRKLGIKYLNKRNEKSNIFMGSYGIGIYRLLYFLVDSFYDGEGI 299

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                     V  I    T      SA      GK   +   +  + A+  V AV     
Sbjct: 300 RLPAQVAPFSVYLI---QTNQRSKYSAAKVAKIGK---LAQANEAVQAVEAVQAV----- 348

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                  P   AP       + ++D         +Y        D+++DD    +  +  
Sbjct: 349 --NSPNVPS--APTP----PLNSNDVEYV-LTLWLYNSFKNSDVDIYYDDTDLHLSRKLK 399

Query: 394 VADLLGFPLQVIV 406
             DL+G P ++I+
Sbjct: 400 NCDLIGVPNRIII 412


>gi|322711570|gb|EFZ03143.1| prolyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 578

 Score =  141 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 5/156 (3%)

Query: 266 KLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGA 321
              DS P  +       R +E+GH FY G++YS P   +    + K    V+MG YGIG 
Sbjct: 238 MDGDSCPRCEAGSLRIHRALELGHTFYLGSRYSKPFELSVTLPNSKAPVPVEMGCYGIGV 297

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-RLSKVGCDVF 380
            R+  AV E   D +G+ WP ++APF+I +I     +    +  +K+ +   +  G D  
Sbjct: 298 SRIFGAVAEHKADERGLNWPRAIAPFEIVVIPTSGVNSQTLEFHDKLTSWSSTGPGFDAV 357

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            DD  E  G +   AD+ G+P+ +++G  +    K+
Sbjct: 358 LDDRKETFGWKMQDADMTGYPVTIVLGKAWRERGKL 393



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPR G++RSREF+MKD Y+FD + E +  +Y  +  +Y   F  + +  +   A SG +
Sbjct: 1   MRPRHGLLRSREFIMKDLYTFDTSFESAIETYKCVSKAYRAFFADMKIPILVAEASSGDM 60

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           GGD SHE+ +    GE +V          
Sbjct: 61  GGDYSHEYHLAHPIGEDRVISCDSCEYTA 89


>gi|237796966|ref|YP_002864518.1| putative prolyl-tRNA synthetase [Clostridium botulinum Ba4 str.
           657]
 gi|229262943|gb|ACQ53976.1| putative prolyl-tRNA synthetase [Clostridium botulinum Ba4 str.
           657]
          Length = 545

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 4/216 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +F + +  T +           +            ++ +       K     G  +G 
Sbjct: 331 MNNFMVGANETCYHYENVNYGRDFKGIVGEFRKIHKDSKCILCGD---KLEVNEGFVIGE 387

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           I            ATF    GK     +    +   ++++  IE + D  GI+WP   + 
Sbjct: 388 IKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSA 447

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           FK+ +      D+      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ V
Sbjct: 448 FKVIVTITNVKDEQQFRVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITV 507

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G K + ++ VEIK R +  ++++ ++++        
Sbjct: 508 G-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 116/275 (42%), Gaps = 22/275 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D EI S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEIDSQKLLLKGGLITKVDIGLYAFTPLGYSFLEGIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +                 ++++N++ ++          +  R+
Sbjct: 61  SKKIGGSKISIPYVNNFE----------------DVSEKNNEFILNFNEEILRFINFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+   +F  + +   G+M  ++ L  + +   L  E  K    ++   
Sbjct: 105 NVTSYKQLPLFFYENNTRFSYKGKNNLGIMGGKQVLR-EYFYMALDEENDKFYKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G++++   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNMGDSRIVACKSCNYGNEVNRVSSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           D      + E           +     F  +P  K
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRK 253


>gi|68076271|ref|XP_680055.1| prolyl-t-RNA synthase [Plasmodium berghei strain ANKA]
 gi|56500925|emb|CAH98273.1| prolyl-t-RNA synthase, putative [Plasmodium berghei]
          Length = 523

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/522 (18%), Positives = 160/522 (30%), Gaps = 153/522 (29%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F  I  +N +     + +L+ R   I + + G+Y+ LPLG + ++ +   I     +  +
Sbjct: 62  FNKIFNDNIKQNGDKASELLFRANYIKEIN-GLYNMLPLGLRVINKIKDFINNYLEKINS 120

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL-----------------ADRNDKAMIYGPT 109
             + +  LQ   LW  S RY  Y  E L +                     +   I  PT
Sbjct: 121 HSVFLSILQPKRLWNISDRYKLYSDEFLYVYKQKQQKADTNLGETIKKKFEEDGNILSPT 180

Query: 110 HEEVMTDIFRSHIK---SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            EE    +         + ++ P   +Q   KFR+E R    + +S+EFLMKD YSF   
Sbjct: 181 CEETALTLINEVYNLNATEKHFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGYSFHTN 240

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            +     Y      Y  IF++LGLK  I  + +   +    SHE+ +L            
Sbjct: 241 EKCMNEIYEIYKECYNDIFNKLGLKYNIIKKRKKDKMNALESHEYQILC----------- 289

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                          D              Y +     N     +  +N  + + GI + 
Sbjct: 290 --------------RDGKFKEGAHIFKLGDYYSKKLNINFLNKKNEKKNIYMGSYGIGIN 335

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            + YF       +   F   +G                              I  P  VA
Sbjct: 336 RLLYF-------LIDNFYDENG------------------------------IKLPSQVA 358

Query: 346 PFKISLINIKAHDQVCRDACEKIYAR---------------------------------- 371
           PF I LI      +   +   KI                                     
Sbjct: 359 PFSIYLIQTNQKSKYSSEKVNKIANTLRNEINEKTNDNKTLYNSLNSNDMEYILTIWLYT 418

Query: 372 -LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK--------------- 415
            L     D ++D+    +  +    DL+G   +VI+  K     K               
Sbjct: 419 ILKANNIDTYYDNTDLHLSRKLKNCDLIGASNRVIINLKSDEKKKIKLPPDFYSYLDDSN 478

Query: 416 -------------------VEIKHRLTGIREDMSLEEVINYA 438
                              +E K+R +   +++++ E++NY 
Sbjct: 479 NNKHNIFHNKLYQTFKNIRIEYKNRFSNKTKNITIHELLNYF 520


>gi|284931606|gb|ADC31544.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 474

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 152/450 (33%), Gaps = 74/450 (16%)

Query: 1   MRRSKYFLPILQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAII 57
           M   K       +N  D   E+ S     +  +IH  + KG  S+LP G K    +   +
Sbjct: 1   MAFKKNLASSKDDNISDWYTEVIS-----KGNLIHYSNIKGFMSFLPNGWKIWQLIKKEL 55

Query: 58  REEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVM 114
            +E ++   +E+ +P+L S  D  +E    + +  E+  +       +  I  PT E   
Sbjct: 56  TKEFDQRDILELCLPSLISQNDFLLEKKHLEGFAPELFIVTKTSNETEKYILRPTSEIAF 115

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            +++R  +++YR LP    Q    FR E         +R FL    + +           
Sbjct: 116 CNLWRETLRNYRQLPIKHNQWTSVFRVEKN-------TRPFLRNSEFFW----------- 157

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                                            HE     +T E          DF +  
Sbjct: 158 ---------------------------------HEIHSCFETEE-------QSNDFAV-- 175

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           +          + +     A     ++           E      + ++          +
Sbjct: 176 DIWKLYQRFIKDILCIPLVAGEKTEAEKFAGAKTTYTVETIMPDGQALQSATSHNLSQNF 235

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S      ++  +     V   S G+ + R++ A+I +  D +G+++P  VAP+ ISL  I
Sbjct: 236 SKAFDIRYQTKNNDYQNVFSMSAGV-STRIIGAIIMTHGDNEGLVFPTKVAPYHISLNCI 294

Query: 355 KAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               +Q      +++  + S+    V  +            + L G    +++G   +  
Sbjct: 295 FDDTNQELNAKLKELANKYSQK-YRVHLNLNKYSTVEIIKNSQLRGDCCVLLMGPNDLKK 353

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++    R++  ++ ++L+ +       FS
Sbjct: 354 NEIVFIDRISKQKQFINLDHLDQKLEELFS 383


>gi|282163066|ref|YP_003355451.1| threonyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282155380|dbj|BAI60468.1| threonyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 636

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 139/442 (31%), Gaps = 57/442 (12%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           +LM R  +         G   + P G+   + +   +  E  + GA+E+  P +   +  
Sbjct: 215 ELMRRLELADYEPGSDPGNMRFYPKGRMVKNLLENYVLMEAAKKGAMEVETPIMYDMEHP 274

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKF 139
                 D +      +   + K +            +      SY+NLP    ++    F
Sbjct: 275 TLKKYLDRFPARQYTVIA-DKKNLFLRFAACFGQFLMSHDMTISYKNLPLKMIELTRYSF 333

Query: 140 RDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E R    G+ R R F M D ++      G+   +   +   +     +GL        
Sbjct: 334 RKEQRGELVGLRRLRAFTMPDMHTLCADMAGATSEFRDQYEMCINTLDTIGLTLKDY--- 390

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                              E  +  ++DF D                  ++E W   +  
Sbjct: 391 -------------------EVAIRFTRDFYDQN-KGFIKGLVKRAGKPVVIEMWDQRFFY 430

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GS 316
                     DSL +   +S   I+V +              T+   DG   Y  +   S
Sbjct: 431 FVLKFEFNFIDSLDKASALSTVQIDVENAER--------YDITYVDQDGSKKYPTILHCS 482

Query: 317 YGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                 R + A +E     S  G+  + P  ++P ++ +I++        D C ++   L
Sbjct: 483 PSGAIERCIYAQLEKQFMESEKGQVPMLPVWLSPTQVRIISL---SDRHADYCRRLAGEL 539

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----RE 427
                 V  DD  E +  +   A     P  V +G   +   K  +  R         + 
Sbjct: 540 RPN--RVDIDDREETVSKKVRDAGKEWIPYVVTIGDAEIGKDKFPVVVRSESQPNKPLKV 597

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
           +M++EE+      R + +   L
Sbjct: 598 EMTVEEL----KARLAKDTDAL 615


>gi|168181840|ref|ZP_02616504.1| putative prolyl-tRNA synthetase [Clostridium botulinum Bf]
 gi|182674840|gb|EDT86801.1| putative prolyl-tRNA synthetase [Clostridium botulinum Bf]
          Length = 545

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 4/216 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +F + +  T +           +            ++ +       K     G  +G 
Sbjct: 331 MNNFMVGANETGYHYENVNYGRDFKGIVGEFRKIHKDSKCILCGD---KLEVNEGFVIGE 387

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           I            ATF    GK     +    +   ++++  IE + D  GI+WP   + 
Sbjct: 388 IKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSA 447

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           FK+ +      D+      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ V
Sbjct: 448 FKVIVTITNVKDEQQFRVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITV 507

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G K + ++ VEIK R +  ++++ ++++        
Sbjct: 508 G-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 116/275 (42%), Gaps = 22/275 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D EI S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEIDSQKLLLKGGLITKVDIGLYAFTPLGYSFLEGIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +                 ++++N++ ++          +  R+
Sbjct: 61  SKKIGGSKISIPYVNNFE----------------DVSEKNNEFILNFNEEILRFINFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+   +F  + +   G+M  ++ L  + +   L  E  K    ++   
Sbjct: 105 NVTSYKQLPLFFYENNTRFSYKGKNNLGIMGGKQVLR-EYFYMALDEENDKFYKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G++++   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNMGDSRIVACKSCNYGNEVNRVSSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           D      + E           +     F  +P  K
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRK 253


>gi|322807830|emb|CBZ05405.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 412

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
             +K     G  +G I            ATF    GK     +    +   ++++ VIE 
Sbjct: 240 CGDKLEVNEGFVIGEIKKIEENLIKNECATFIDNKGKSKPFTIYKGFMDIYKIISWVIEQ 299

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + D  GI+WP   + FK+ +      D+      EKIY+ L  +G     DD  E+ G +
Sbjct: 300 NKDELGIVWPMETSAFKVIVTIANVKDEQQFKVGEKIYSSLVNIGIGTILDDRKERAGVK 359

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  ADL G P+++ VG K + ++ VEIK R +  ++++ ++++        
Sbjct: 360 FKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 409


>gi|219850181|ref|YP_002464614.1| YbaK/prolyl-tRNA synthetase associated region [Chloroflexus
           aggregans DSM 9485]
 gi|219544440|gb|ACL26178.1| YbaK/prolyl-tRNA synthetase associated region [Chloroflexus
           aggregans DSM 9485]
          Length = 531

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            + A G++  + +    +    ++   +E  HD +GI+WP ++AP  I L+ I    +  
Sbjct: 385 IQDAGGQNRPLWIAGIELDLEPLIHLGVEQHHDERGIVWPAAIAPVDIHLVTIGRG-EAV 443

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             A   +   L   G  V  DD  E+ G +F  ADL+G P +++V  K ++  +VE++ R
Sbjct: 444 VTAAHTLATELRNAGWSVLIDDRDERAGVKFNDADLIGAPWRLVVSEKLLAAGQVEVRRR 503

Query: 422 LTGIREDMSLEEVINYAS 439
                  ++  +VI +  
Sbjct: 504 TEVQATVIAQAKVIAWLQ 521



 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 32/193 (16%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +  F   L++ P +A+  + +L+ R GM+   + G    LPLG   L  + AI+   
Sbjct: 1   MQLATLFGRTLRQAPAEADTLATQLLWRAGMLRTLNDGEPVLLPLGSAILRRLAAILGTA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ VPT  +A  W ++                              +T + R 
Sbjct: 61  VQNDGAQEIVVPTTTTAS-WSDT------------------------------VTALARR 89

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   +  + + R   RPR G++              L  E ++         
Sbjct: 90  DIDSYRQLPQLLWSWRRRKRLATRPR-GLVDMPTPTTLSWAVLALDEEQAQQHLTVTRNR 148

Query: 181 YLRIFHRLGLKSI 193
                H+ GL  +
Sbjct: 149 LSIALHQCGLDHV 161


>gi|325193707|emb|CCA27955.1| prolyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 697

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 6/171 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  +        +   GK       S+G    R +  +I    D KG
Sbjct: 413 TGRGIQAATSHQLGQNFGKMFGIAAEYEAGKKLIPFQTSWGFT-TRSIGIMIMVHGDDKG 471

Query: 338 IIWPDSVAPFKISLINIKAHD----QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           ++ P  +AP ++ ++ I   D        +  + +   L  VG  V  DD      G ++
Sbjct: 472 LVLPPRIAPLQVIIVPIPYKDRQEIDEISNQAKDVCQLLESVGVRVQVDDRQVYTPGWKY 531

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +L G PL+  +G K V + +V +  R  G++ D+ + E+         
Sbjct: 532 NFWELKGVPLRFEIGPKDVVNRQVRVVRRDNGVKTDIPVYELSTSIPALLE 582



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ ++GMI  +   G Y   P   +  + +   +       G      P   S + L  
Sbjct: 211 EVITKSGMIEYYDISGCYILRPYSYEIWEKIQGFLDTRIKSIGVKNCYFPIFVSNEKLQR 270

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E +M   F++ I+S+R+LP    Q   
Sbjct: 271 EKDHLEGFAPEVAWVTKSGSSDLKEPIAIRPTSETIMYPAFKNWIRSHRDLPLKLNQWNN 330

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R E +     +R+REFL ++ ++   T   +    +++   Y   +  L
Sbjct: 331 VVRWEFKNPTPFIRTREFLWQEGHTAHATKAEADEQVHQILDFYAAAYEEL 381


>gi|153938792|ref|YP_001392858.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           Langeland]
 gi|152934688|gb|ABS40186.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           Langeland]
 gi|295320836|gb|ADG01214.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           230613]
          Length = 545

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 4/216 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +F + +  T +           +            ++ +       K     G  +G 
Sbjct: 331 MNNFMVGANETGYHYENVNYGRDFKGIVGEFRKIHKDSKCILCGD---KLEVNEGFVIGE 387

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           I            ATF    GK     +    +   ++++  IE + D  GI+WP   + 
Sbjct: 388 IKKIEENLIKNECATFIDNKGKSKLFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSA 447

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           FK+ +      D+      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ V
Sbjct: 448 FKVIVTIANVKDEQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITV 507

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G K + ++ VEIK R +  ++++ ++++        
Sbjct: 508 G-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 118/275 (42%), Gaps = 22/275 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG   L+ +  ++  +
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLECIQKVVENK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +                 ++++N+  ++       +  +  R+
Sbjct: 61  SKKIGGSQISIPYVNNFE----------------DVSEKNNDFILNFNEEILMFINFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+   +F  + +   G+M  ++ L  + +   L  E  K +  ++   
Sbjct: 105 NVTSYKQLPLFFYENNTEFSYKGKNNLGIMSGKQVLR-EHFYIALDEEKDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G++++   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSRIVACKSCNYGNEINRASSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           D      + E           +     F  +P  K
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRK 253


>gi|303388510|ref|XP_003072489.1| prolyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301629|gb|ADM11129.1| prolyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
          Length = 508

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH--YVQMGSYGIGAMRVVAAVIESSHDG 335
           S RGI+ G     G  +S          +G ++  +V   S+G+   R +   I    D 
Sbjct: 232 SGRGIQAGTSHSLGQNFSKMFDIKVDTEEGSENSSFVYQNSWGLT-TRSIGIAIMIHSDN 290

Query: 336 KGIIWPDSVAPFKISLIN--IKAHD-----QVCRDACEKIYARLSKVGCDVFWDDMGE-Q 387
            G++ P  VA  ++ +I   I A       +  R    KI+A+L      V  DD     
Sbjct: 291 LGLVLPPRVAMIQVVVIPCGITASSSEEDVESLRTYISKIHAQLKNF-VRVHVDDRNNVT 349

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G +F   ++ G PL++ VG K +++S+  +  R T  ++ +S+E++        
Sbjct: 350 VGFKFNHWEIRGVPLRLEVGFKDMANSEACLVRRDTRAKKQVSVEDIGQTVMEEI 404



 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  MI  +  KG Y   P GQ     +     E+    G  E   P L     L  
Sbjct: 30  QVITKGEMIDYYEIKGCYVMRPQGQFVWKCIQKWFTEKIEELGVQECYFPMLVPKSTLEK 89

Query: 82  ESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    +++  E+  +    ++     +   PT E ++   F   I+S+R+LP    Q   
Sbjct: 90  EKNHVENFSPEVAWITKCGNEVLGDPVAVRPTSETIIYPSFSKWIRSHRDLPLKINQWCS 149

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R EL      +R +EFL ++ ++  LT E S      +   Y RI+  L
Sbjct: 150 VLRWELHGTLPFIRGKEFLWQEGHTAFLTKEESDVEVFAILDLYSRIYSEL 200


>gi|307069528|ref|YP_003878005.1| putative threonyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
 gi|306482788|gb|ADM89659.1| putative threonyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
          Length = 467

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 94/319 (29%), Gaps = 34/319 (10%)

Query: 22  SHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREE-QNRTGAIEMSVPTLQSA 77
            H+++ +        +   G+  W   G     N+N  IR     +    E+  P +   
Sbjct: 73  DHRILYKKNNLFFFKKKMPGLIFWNKNGYIIWKNINKYIRNNIYIKYNYKEIKTPIILRD 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             W ++  ++ Y K M  L  +N K     P +      I+     SY+ LP  + +I  
Sbjct: 133 YFWKKTKHWNYYKKNMFLLKTKNKKY-ALKPMNCPGHIQIYNYKKISYKKLPLKYGEIGE 191

Query: 138 KFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            FR+E      G++R + F   D + F    +       K      +++     K+I ++
Sbjct: 192 CFRNEYTGSLHGILRLKNFNQDDGHIFCKKNQILLE-LIKFNNICKKVYKNFNFKNIKIK 250

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
               P     ++    L++    ++    +     I      +   I             
Sbjct: 251 LSLRPKKKIGNNYLWNLSEKILLKIILFFNIKIKNIEKNGAFYGPKIEYYLKDLNKKIWQ 310

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T  +                                             K + + +  
Sbjct: 311 CGTIQIDFIISKILNLNYNNKYNI---------------------------KKNIIILHR 343

Query: 317 YGIGAMRVVAAVIESSHDG 335
             +G++     ++  ++ G
Sbjct: 344 AILGSIERFIGILIENNKG 362


>gi|21229406|ref|NP_635328.1| threonyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|34395862|sp|Q8PRY4|SYT_METMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|20907999|gb|AAM33000.1| Threonyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 634

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 140/438 (31%), Gaps = 62/438 (14%)

Query: 24  KLMLRTGMIHQHS---KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R  +         G   + P G+     +   + +     GA+E+  P +   +  
Sbjct: 217 ELMRRLELADYEPGSDSGNMRYYPKGRLVKSLLENYVLDVATEFGAMEVETPLMYDMNHP 276

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ- 136
            L     R+ +         + + + M            +      SY+NLP    ++  
Sbjct: 277 TLKKYLDRFPARQ----YSIESDKRHMFLRFAACFGQFLMNHDMTISYKNLPLRMIEMTR 332

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++     + + + + + +   + +   +G+     
Sbjct: 333 YSFRKEQRGELVGLRRLRAFTMPDMHTLCEDMDQAVNQFKEQYDLCISVLENVGIH---- 388

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                                 + +V        +    +            ++ +    
Sbjct: 389 --------------------INDYEVAIRFTRDFYEANKDLVVNMAKTVNKPVLVEMWDT 428

Query: 256 YAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQ 313
                 +  E  F D+L +   +S   I+V +              ++  ADGK +    
Sbjct: 429 RFFYFVLKFEFNFVDALAKASALSTVQIDVENAER--------YDISYVNADGKLERPTV 480

Query: 314 MGSYGIG-AMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +     G   R + A++E     + +GK  + P  ++P ++ ++ I    +      E++
Sbjct: 481 LHCSPSGAIERCIYALLEKAAMETEEGKVPMLPVWLSPTQVRIVPI---SEKHIAFAEEV 537

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-----LT 423
             +L               IG +   A     P  V++G K + +S + +  R       
Sbjct: 538 AKKLDFRVDVDDR---DLSIGKKVREAGREWVPYVVVIGDKEMEESTINVTIREESGQDK 594

Query: 424 GIREDMSLEEVINYASHR 441
             +  M+ EE+       
Sbjct: 595 PKKVQMTPEELNARIKEE 612


>gi|70953193|ref|XP_745713.1| prolyl-t-RNA synthase [Plasmodium chabaudi chabaudi]
 gi|56526123|emb|CAH76923.1| prolyl-t-RNA synthase, putative [Plasmodium chabaudi chabaudi]
          Length = 498

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/496 (17%), Positives = 174/496 (35%), Gaps = 74/496 (14%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F  I  +N +     + +L+ R   I + + G+Y+ LPLG + ++ +   I     +  +
Sbjct: 12  FNRIFNDNVKQNGDKASELLFRANYIKEIN-GLYNMLPLGLRVINKIKDFINNYLEKINS 70

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL---------ADR--------NDKAMIYGPT 109
             + +  LQ   LW  S R   Y +E L +          D          D   I  PT
Sbjct: 71  HSVFLSILQPKRLWNISDRSKLYSEEFLYVYKQKQQKVDTDIGESVKKKFEDDGNILSPT 130

Query: 110 HEEVMTDIFRSHIK---SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            EE    +         + ++ P   +Q   KFR+E R    + +S+EFLMKD YSF   
Sbjct: 131 CEESALTLINEIYNLNATEKHFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGYSFHTN 190

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
            +     Y      Y  IF++LGLK  I  + +   +    SHE+ +L   G+  +   +
Sbjct: 191 EKCMNEIYEIYKECYNNIFNKLGLKYNIIKKRKKDKMNALESHEYQILCRDGKFKEGAHT 250

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAP-------YAATSDVHNEKLFDSLPENKRV 277
               D+     +  F +  +    +   +         Y    + +++            
Sbjct: 251 FKLGDYYSKKLDIHFLNKRNEKKYIYMGSYGIGINRLLYFLIDNFYDDDGIKLPSPIAPF 310

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S   I+      + ++    +    K    +  + ++    I   + V+      +D + 
Sbjct: 311 SVYLIQTNQKSKYSSEKVKKIVNKLKNEINEKGFSKIHDPPISDDQTVSP-DSVHNDEEE 369

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                     + +L N    + +       +Y  L     D ++D+    +  +    DL
Sbjct: 370 ---------KEDALYNTLNSNDMEYVLTIWLYTILKVNNIDTYYDNTDLHLSRKLKNCDL 420

Query: 398 LGFPLQVIVGSKFVSDSK----------------------------------VEIKHRLT 423
           +G   +VI+  K     K                                  +E K+R +
Sbjct: 421 IGASNRVIINLKSDEKKKIKLPTDFYNYLDDNQNNKYNIFHNKLYQAFKNIRIEYKNRFS 480

Query: 424 GIREDMSLEEVINYAS 439
              +++++ +++N+ +
Sbjct: 481 NETKNITIHDLLNHFN 496


>gi|261883755|ref|ZP_06007794.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 225

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 280 RGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           R  + G I      ++LP      +   +  +   V +    +G+      ++     G+
Sbjct: 64  RKWQCGTI---QVDFNLPARFDLGYIDENNERKQPVMLHRAIMGSFERFIGILLEHTAGE 120

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              W   +AP ++ +I I            ++++ L  +  D    +  E +  +   A+
Sbjct: 121 LPFW---IAPTQVVIIPISNEHHK---YANEVHSLLLDMDVDSEIFNKNETLNKKIRTAE 174

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               P+ +++G   V++  V ++ R    ++DMSL+E + +   + + 
Sbjct: 175 KQRVPMIIVLGDNEVTNRGVALRDRRAREQKDMSLDEFLGFIQSKLNE 222


>gi|167517733|ref|XP_001743207.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778306|gb|EDQ91921.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1312

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 105/336 (31%), Gaps = 63/336 (18%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
            ++++++ +I  +   G Y   P       ++      E    G      P   S A L  
Sbjct: 1032 EVIIKSELIDYYDVSGCYILRPWAYSVWQSIQEFFDREIRARGVQNSYFPIFVSQAALER 1091

Query: 82   ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            E      +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q   
Sbjct: 1092 EKEHIADFAPEVAWVTRSGESELEKPIAVRPTSETVMYPAYAKWIQSHRDLPLKLNQWCN 1151

Query: 138  KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
              R E +     +R+REFL ++ ++   T   +     ++   Y R++    L ++P+  
Sbjct: 1152 VVRWEFKQPTPFLRTREFLWQEGHTAFATKPEADEEVLEILELYRRVYEE--LLAVPV-- 1207

Query: 198  ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                          V     E + F   D+          +   I    S          
Sbjct: 1208 --------------VPGRKTEKEKFAGGDYTTTVEAYIGANGRAIQGATSHHLGQNFSKM 1253

Query: 258  ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                            FG KY  P          +   V   S+
Sbjct: 1254 --------------------------------FGIKYQNP------DKHDEFINVFQNSW 1275

Query: 318  GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
            GI   R +  +I    D KG++ P  VA  +  +I 
Sbjct: 1276 GIT-TRTIGVMIMVHGDDKGLVLPPRVASIQAIIIP 1310


>gi|302389916|ref|YP_003825737.1| histidyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200544|gb|ADL08114.1| histidyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 423

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 150/442 (33%), Gaps = 49/442 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        +  I RE   + G  E+  PT +  +L+        D 
Sbjct: 1   MLTKAPRGTRDLLPEECTKWVFLENIFREICGQFGYREIRTPTFEHTELFQRGIGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM   +D++ +++   P     +   +  H    + +P   + I   FR E RP+ G
Sbjct: 61  VEKEMYTFSDKSGRSITLKPEGTAPVARAYIEHKLYNKPMPVKLFYITPCFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R REF      +F             + V +L+   RLGL S+ +R  S  IG +   
Sbjct: 120 --RQREFHQFGIEAFGSPSPLIDVEVITLAVFFLK---RLGLDSLEVRINS--IGCERCR 172

Query: 209 EFIVLA-DTGETQVFCSKDFMDFPIPSENT----DFDDIISLNSIVEQWTAPYAATSDVH 263
           E    A +    +   S           NT    D  D      +VE          +  
Sbjct: 173 EDYKKALEDFLFEKANSLCDTCKVRLGRNTLRILDCKDPGCQKLLVEAPVILEYLCDNCR 232

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----------GKDHYVQ 313
                     +       ++ G +   G  Y           D          G+  ++ 
Sbjct: 233 GHFDEVKKGLSALDVKYSVDPGIVR--GLDYYTKTVFEIISKDLGAQSTVCGGGRYDHLV 290

Query: 314 MGS---------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                       +GIG  R++  +     +  G++    + P ++ +  I   D+  RD 
Sbjct: 291 EECGGPPTPAAGFGIGIERLIMVL-----EANGLL---DIPPIQMDVF-IAVLDETYRDY 341

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKHRL 422
             K+  RL   G     D +G  + +Q   AD    P     I+G   V    + +K   
Sbjct: 342 GLKLLYRLRMAGFSAETDYVGRSLKAQMKYAD--KIPSKYAFIIGEDEVKTGIITVKDLT 399

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           TG +E +  EEV  Y  ++   
Sbjct: 400 TGEQEKVPCEEVETYLKNKIRK 421


>gi|170759933|ref|YP_001788845.1| putative prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406922|gb|ACA55333.1| putative prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 545

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 84/216 (38%), Gaps = 4/216 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +F + +  T +           +            ++ +       K     G  +G 
Sbjct: 331 MNNFMVGANETGYHYENVNYGRDFKGIVGEFRKIHKDSKCILCGD---KLEVNEGFVIGE 387

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           I            ATF    GK     +    +   ++++  IE + D  GI+WP   + 
Sbjct: 388 IKKIEENLIKNECATFIDNKGKSKAFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSA 447

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           FK  +      D+      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ V
Sbjct: 448 FKAIVTIANVKDEQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITV 507

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G K + ++ VEIK R +  ++++ ++++        
Sbjct: 508 G-KNIKENNVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 118/275 (42%), Gaps = 22/275 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSETLVHSLREDPADIEMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLECIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P + + +                 ++++N++ ++       +  +  R+
Sbjct: 61  SKKIGGSKISIPYVNNFE----------------DVSEKNNEFILNFNEKVLMFINFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+  ++F  + +   G+M  ++ L  + +   L  E  K +  ++   
Sbjct: 105 NVTSYKQLPLFFYENNIEFSYKGKNNLGIMSGKQVLR-EHFYMVLDEEKDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G++ +   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSSIVACKSCNYGNEINRASSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           D      + E           +     F  +P  K
Sbjct: 219 DHQIEKDLKELNKIETPDIKTIDELGEFFKVPYRK 253


>gi|308805150|ref|XP_003079887.1| multifunctional aminoacyl-tRNA ligase-like protein (ISS)
           [Ostreococcus tauri]
 gi|116058344|emb|CAL53533.1| multifunctional aminoacyl-tRNA ligase-like protein (ISS)
           [Ostreococcus tauri]
          Length = 589

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 91/319 (28%), Gaps = 64/319 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +     +E           P   SA  L  E    + +  E+  
Sbjct: 281 SGCYILKPWAYAQWEVLKEFFDKEIKALDVENCYFPMFVSASRLEKEKDHIEDFAPEVAW 340

Query: 96  LADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +      +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 341 VTRSGETDLEVPIAVRPTSETVMYPHYAQWIRSHRDLPLRLNQWCNVVRWEFKHPTPFIR 400

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E               +F  L L    +             E++
Sbjct: 401 SREFLWQEGHTAYATKEECDVE----------VFQILDL-YRRVY-----------EEYL 438

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +                  +P + ++ +                               
Sbjct: 439 AV----------------PVVPGKKSEKEKFAGGLYTTTVEAYV---------------- 466

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 S RG++       G  +S   +  F+   G        S+G    R +      
Sbjct: 467 ----PGSGRGVQGATSHCLGQNFSKMFNIEFEDTKGGKSLAWQNSWGFT-TRTLGVCYMV 521

Query: 332 SHDGKGIIWPDSVAPFKIS 350
             D  G++ P  VAP +  
Sbjct: 522 HGDDDGLVLPPKVAPIQAI 540


>gi|225679653|gb|EEH17937.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 551

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 27/192 (14%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------------KGAD 306
                  EN   +   IE+ H F+ GT+YS  ++A+                    + + 
Sbjct: 353 DRCSKCGENSVETHTAIELAHTFHLGTRYSEVLNASVAIPSSILRGSLTTERTALAQSSS 412

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                ++MG +GIG  R++AAV ++  D KG+ WP  ++PF + +I     D+      E
Sbjct: 413 TVSVPLEMGCHGIGVSRMIAAVADTLADPKGLNWPRVISPFDVIII----SDRELEKEAE 468

Query: 367 KIYARL---SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
           ++Y  L    K   D   DD  + +  +   ADL+G+P+ +++G  +  DSK+EI+  RL
Sbjct: 469 QVYDTLMESRKADVDAIIDDREKSLAWKLRDADLIGYPVIIVIGKLWKRDSKLEIQCRRL 528

Query: 423 TGIREDMSLEEV 434
              RE +SL+++
Sbjct: 529 ENFRETVSLQDL 540



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 57/103 (55%)

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              +  K+RDE RPR G++R REF+MKD Y+FD + E +  +YN +  +Y+R+F+ L L 
Sbjct: 79  MRTLGRKYRDEPRPRQGLLRGREFMMKDLYTFDYSAEKAIETYNAVKEAYIRLFNELKLP 138

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            I   A+SG +GG LSHEF +    GE  +             
Sbjct: 139 YIVAAADSGNMGGSLSHEFHLPNSKGEDTIVSCSSCGHVYNEE 181


>gi|51102324|gb|AAT95875.1| prolyl-tRNA synthetase [Trichomonas vaginalis]
          Length = 506

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 8/230 (3%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E     +       I  +  D    I    +            D      F  + + 
Sbjct: 186 PWNEAHTAHATPQEALDILGKFWDIVHDILTTKLSIDGLRLRRPDWDRFPGAEFTDVLDV 245

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R ++     Y G  +S        G      +  M   G+ + R +AAV+ +  D
Sbjct: 246 VMPCGRVLQSVGAHYLGQHFSKVFKIQVDGE-----FSYMTCIGV-STRCLAAVLSAHGD 299

Query: 335 GKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQF 392
            KG+I P  +AP ++ ++ I   D         ++   L   G  V  DD   +  G +F
Sbjct: 300 DKGLIIPTIIAPIQVVIVPILRKDNDALLAKVAEMKKELRAAGIRVHIDDDTTRSPGEKF 359

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              ++ G PL++ VG + +  ++  +  R    +  + L           
Sbjct: 360 YYWEMKGVPLRIEVGPRDLEKNECVLVVRGIEGKYSVHLSAFAQECQDWL 409



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 7/167 (4%)

Query: 24  KLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LM+  G++      KG+  +   G    + +  +     ++ G      P         
Sbjct: 55  ELMVTAGIVDKRWDIKGMPIFCSYGYTMHNEIMHLFEVAYSKIGVPMTQFPAFIPRSFLE 114

Query: 82  -ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            E+     +  E       ++  M   PT E  M  +F   +K+  +LP    Q    +R
Sbjct: 115 AEADHVKGFQSECFW----HEDEMCLRPTSETAMYSMFAKWVKTIEDLPVMVQQSCNVYR 170

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
            E +    ++R RE    +A++   TP+ +     K +     I   
Sbjct: 171 YETKGTKPLIRVREIPWNEAHTAHATPQEALDILGKFWDIVHDILTT 217


>gi|221118771|ref|XP_002157095.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 204

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 83/205 (40%), Gaps = 15/205 (7%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E      A      + ++ D+L    + +   ++    F    +++L      
Sbjct: 7   NDFGDPWELNPGDGAFYGPKIDIQIRDALRRYHQCATIQLD----FQLPERFNLTY---V 59

Query: 303 KGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G  D +   V +    +G++  + A++  ++ GK   WP  ++P +  +I +       
Sbjct: 60  SGEGDDQKRPVIIHRAILGSVERMIAILTENYGGK---WPFWLSPIQAVVIPVSNK---F 113

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +K++  L     DV  D  GE +  +   A L+ +   ++VG K ++ + V ++ R
Sbjct: 114 DEYAQKVHRFLQDFRVDVNLD-AGETLNKKIRNAQLMHYNFILVVGDKEMTSNTVNVRTR 172

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
              +  + SLE V+   +   ++ +
Sbjct: 173 DNKVHGEKSLETVLARFNELNTSRK 197


>gi|315046950|ref|XP_003172850.1| bifunctional aminoacyl-tRNA synthetase [Arthroderma gypseum CBS
           118893]
 gi|311343236|gb|EFR02439.1| bifunctional aminoacyl-tRNA synthetase [Arthroderma gypseum CBS
           118893]
          Length = 604

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/420 (14%), Positives = 123/420 (29%), Gaps = 79/420 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 101 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 160

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT          S    Y      + +  
Sbjct: 161 KEKDHIEGFAAEVAWVTHAGNSALEKKIAIRPT----------SETVMYPY----YAKWI 206

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              RD        +  +                                 R   K+    
Sbjct: 207 RSHRD--------LPLKLNQWNSVV-------------------------RWEFKNPQPF 233

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  +    +V                 +++++++  I  Q T   
Sbjct: 234 LRTREFLWQEGHTAHLTKEEAHEEVLQILQHYAHV-------YEELLAVPVIQGQKTDKE 286

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKDHY- 311
                ++   +   +P     + RGI+ G     G  +S     T +      D K    
Sbjct: 287 KFAGGLYTTTVEGYIPA----TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPPL 342

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-----KAHDQVCRDAC 365
            V   S+G+ + R +  ++    D +G++ P  VA  +  ++ +        D+      
Sbjct: 343 HVWQNSWGL-STRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDDERAAIMA 401

Query: 366 E--KIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           E   I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 402 EIEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 461


>gi|302754528|ref|XP_002960688.1| hypothetical protein SELMODRAFT_74713 [Selaginella moellendorffii]
 gi|300171627|gb|EFJ38227.1| hypothetical protein SELMODRAFT_74713 [Selaginella moellendorffii]
          Length = 495

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 18/164 (10%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++      F+    +   V   S+G+   R +  +I    D K 
Sbjct: 247 TGRGIQGATSHCLGQNFAEMFDIVFEDEKRERKKVWQNSWGLT-TRTIGVMIMVHGDDK- 304

Query: 338 IIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
                         +  K  D Q   DA      +L   G  V  D       G +++  
Sbjct: 305 --------------VPYKDVDTQKLFDAAASTARQLKAAGLRVKEDTRDNYSPGWKYSNW 350

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +L G PL+V +G + +++S+V +  R TG +ED+ ++++++  S
Sbjct: 351 ELKGVPLRVEIGPRDLANSQVRVVRRDTGAKEDVPMDKIVDRIS 394



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 13/173 (7%)

Query: 29  TGMIHQHS-KGIYSWLPLGQKALDN-------VNAIIREEQNRTGAIEMSVP-TLQSADL 79
             MI  +   G Y  LP      D        +   +  E    G      P  +    L
Sbjct: 43  GDMIEYYDISGCYILLPWSYAIWDVTLFLLSFLQRFLDGEIKNLGVENAYFPLFVSERAL 102

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    + A    +   PT E VM  IF   I+ +R+LPF   Q 
Sbjct: 103 VTEKKHVEGFAPEVAWVTKSGESALEVPIAIRPTSETVMYPIFAKRIRGHRDLPFKINQW 162

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +RSREFL ++ ++   T + +      +   Y R++  L
Sbjct: 163 CNVVRWEFKHPTPFIRSREFLWQEGHTAYATKKEADEEVYAVLDLYRRVYEEL 215


>gi|302803187|ref|XP_002983347.1| hypothetical protein SELMODRAFT_118068 [Selaginella moellendorffii]
 gi|300149032|gb|EFJ15689.1| hypothetical protein SELMODRAFT_118068 [Selaginella moellendorffii]
          Length = 495

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 18/164 (10%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + RGI+       G  ++      F+    +   V   S+G+   R +  +I    D K 
Sbjct: 247 TGRGIQGATSHCLGQNFAEMFDIVFEDEKRERKKVWQNSWGLT-TRTIGVMIMVHGDDK- 304

Query: 338 IIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
                         +  K  D Q   DA      +L   G  V  D       G +++  
Sbjct: 305 --------------VPYKDVDTQKLFDAAASTARQLKAAGLRVKEDTRDNYSPGWKYSNW 350

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +L G PL+V +G + +++S+V +  R TG +ED+ ++++++  S
Sbjct: 351 ELKGVPLRVEIGPRDLANSQVRVVRRDTGAKEDVPMDKIVDRIS 394



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 13/173 (7%)

Query: 29  TGMIHQHS-KGIYSWLPLGQKALDN-------VNAIIREEQNRTGAIEMSVP-TLQSADL 79
             MI  +   G Y  LP      D        +   +  E    G      P  +    L
Sbjct: 43  GDMIEYYDISGCYILLPWSYAIWDVTLFLLSFLQRFLDGEIKNLGVENAYFPLFVSERAL 102

Query: 80  WVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E    + +  E+  +    + A    +   PT E VM  IF   I+ +R+LPF   Q 
Sbjct: 103 VTEKKHVEGFAPEVAWVTKSGESALEVPIAIRPTSETVMYPIFAKRIRGHRDLPFKINQW 162

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               R E +     +RSREFL ++ ++   T E +      +   Y R++  L
Sbjct: 163 CNVVRWEFKHPTPFIRSREFLWQEGHTAYATKEEADEEVYAVLDLYRRVYEEL 215


>gi|296110107|ref|YP_003617056.1| threonyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295434921|gb|ADG14092.1| threonyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 610

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 143/420 (34%), Gaps = 45/420 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G + W P G+   D +   +       GA+ +  P +   +        D +G+   R  
Sbjct: 214 GHFRWYPKGKLIRDLIADYVYYLVLSHGAMPVETPVMYDLNNKAIKEHADKFGERQYRFR 273

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL-KFRDELRPRF-GVMRSREF 155
              +K ++           I +      + LP   Y++    FR E      G+ R R F
Sbjct: 274 -MGNKELMLRFAACFGQFMIKKDMYLLPKYLPLKLYELSTYSFRYEQSGELVGLKRLRAF 332

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            M D ++  L  E +   + K F   L+    L L    +   +     +    F+ +A 
Sbjct: 333 TMPDMHTVCLNLEQAMEEFEKQFWMCLKTGEDLELDYYVIFRFTKDFFEEHKDWFLRMA- 391

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                                 ++ +  + + ++E             +  + DSL    
Sbjct: 392 ---------------------KEYKERYNKDLLLEILPKRKHYWVGKVDIAVIDSLGRPI 430

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                 I+V     F  K           AD + + + +     G++  V   +    D 
Sbjct: 431 ENPTVQIDVESSKRFDIK---------VHADKEIYPIILHCSPTGSIERVICALLE-RDM 480

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +   +P  ++P ++ +I++    +   +  E I   L K       DD   ++G +   A
Sbjct: 481 ELPYFPIWLSPIQVRVISV---SEKYNEYAENIVKELIKNNIRADLDDRDLRVGKKIREA 537

Query: 396 DLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSNN--RPV 448
                P  V+VG + V  +   V I+ + T     +  MSLEE+I     +  +   RP+
Sbjct: 538 GKDWVPYVVVVGEEEVKGNKLTVTIREKSTLKEPYKVKMSLEELIKEVKEKCKDKPFRPL 597


>gi|123434302|ref|XP_001308783.1| Anticodon binding domain containing protein [Trichomonas vaginalis
           G3]
 gi|121890480|gb|EAX95853.1| Anticodon binding domain containing protein [Trichomonas vaginalis
           G3]
          Length = 513

 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 8/230 (3%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E     +       I  +  D    I    +            D      F  + + 
Sbjct: 193 PWNEAHTAHATPQEALDILGKFWDIVHDILTTKLSIDGLRLRRPDWDRFPGAEFTDVLDV 252

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R ++     Y G  +S        G      +  M   G+ + R +AAV+ +  D
Sbjct: 253 VMPCGRVLQSVGAHYLGQHFSKVFKIQVDGE-----FSYMTCIGV-STRCLAAVLSAHGD 306

Query: 335 GKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQF 392
            KG+I P  +AP ++ ++ I   D         ++   L   G  V  DD   +  G +F
Sbjct: 307 DKGLIIPTIIAPIQVVIVPILRKDNDALLAKVAEMKKELRAAGIRVHIDDDTTRSPGEKF 366

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              ++ G PL++ VG + +  ++  +  R    +  + L           
Sbjct: 367 YYWEMKGVPLRIEVGPRDLEKNECVLVVRGIEGKYSVHLSAFAQECQDWL 416



 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 7/167 (4%)

Query: 24  KLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LM+  G++      KG+  +   G    + +  +     ++ G      P         
Sbjct: 62  ELMVTAGIVDKRWDIKGMPIFCSYGYTMHNEIMHLFEVAYSKIGVPMTQFPAFIPRSFLE 121

Query: 82  -ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            E+     +  E       ++  M   PT E  M  +F   +K+  +LP    Q    +R
Sbjct: 122 AEADHVKGFQSECFW----HEDEMCLRPTSETAMYSMFAKWVKTIEDLPVMVQQSCNVYR 177

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
            E +    ++R RE    +A++   TP+ +     K +     I   
Sbjct: 178 YETKGTKPLIRVREIPWNEAHTAHATPQEALDILGKFWDIVHDILTT 224


>gi|299471018|emb|CBN78879.1| threonine--tRNA ligase [Ectocarpus siliculosus]
          Length = 704

 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 4/142 (2%)

Query: 4   SKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  +    E    A+   H+ +         H  S G   +LP G +  + +   IR E
Sbjct: 379 SKDQMKKFNEFQEQAKKRDHRRVGVQQDLFFFHPLSPGSAFFLPHGTRIYNRLMEFIRSE 438

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E++ P + + DLW +SG    Y   M R      +     P +      +F  
Sbjct: 439 YWKRGYEEVTTPNMYNMDLWEQSGHAAHYKDAMFRFPVE-GQEFGLKPMNCPGHCIMFSQ 497

Query: 121 HIKSYRNLPFTFYQIQLKFRDE 142
            +KS+R LP  +    +  R+E
Sbjct: 498 GVKSWRELPLRYADFGVLHRNE 519



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 105/320 (32%), Gaps = 41/320 (12%)

Query: 153 REFLMKDAYSFD-LTPEGS------KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           R  + +D + F  L+P  +         YN++       + + G + +     +  +   
Sbjct: 400 RVGVQQDLFFFHPLSPGSAFFLPHGTRIYNRLMEFIRSEYWKRGYEEVT----TPNMYNM 455

Query: 206 LSHEFIVLADTGETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDV 262
              E    A   +  +F       +F +   N     I+    +         YA    +
Sbjct: 456 DLWEQSGHAAHYKDAMFRFPVEGQEFGLKPMNCPGHCIMFSQGVKSWRELPLRYADFGVL 515

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---------LPMSAT-------FKGAD 306
           H  ++FD++    + +   ++      F  KYS          P +A             
Sbjct: 516 HRNEVFDAMERVHQCATVQLDFQLPIRFNLKYSAGTEEHGDAKPEAAKPAEGGGSEAKPA 575

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+   V +    +G++  + AV+   + GK   WP  ++P +  ++ +    Q   D   
Sbjct: 576 GEKRPVMIHRAMLGSLERMIAVLTEHYGGK---WPFWLSPRQALIVPVA---QKYNDYAT 629

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +  RL   G  V  +   + +  +        +   ++VG       +V ++      +
Sbjct: 630 NVKDRLHNAGFYVDVETSNKTLNKKVREGVTAKYNYILVVGEAEEEADEVNLRG-----K 684

Query: 427 EDMSLEEVINYASHRFSNNR 446
               + +++         ++
Sbjct: 685 GQQKVSDLMQMFQDLTDKHQ 704


>gi|226291392|gb|EEH46820.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 583

 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 27/192 (14%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------------KGAD 306
                  EN   +   IE+ H F+ GT+YS  ++A+                    + + 
Sbjct: 385 DRCSKCGENSVETHTAIELAHTFHLGTRYSDVLNASVAIPSSILRGSLTTERTALAQSSS 444

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                ++MG +GIG  R++AAV ++  D KG+ WP  ++PF + +I     D+      E
Sbjct: 445 TVSVPLEMGCHGIGVSRMIAAVADTLADPKGLNWPRVISPFDVIII----SDRELEKEAE 500

Query: 367 KIYARL---SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
           ++Y  L    K   D   DD  + +  +   ADL+G+P+ +++G  +  DSK+EI+  RL
Sbjct: 501 QVYDTLMESRKADVDAIIDDREKSLTWKLRDADLIGYPVIIVIGKLWKRDSKLEIQCRRL 560

Query: 423 TGIREDMSLEEV 434
              RE +SL+++
Sbjct: 561 ENFRETVSLQDL 572



 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 39/198 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G++  LPLG +  + +  +I +     GA ++S+ ++ S  LW +SGR      E  + 
Sbjct: 55  SGVFHLLPLGLRVQEKLERLIDKHMRTLGASKLSLSSISSQALWEKSGRLKKDS-EFFKF 113

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            DR +   +  PTHEE +T +  S                                    
Sbjct: 114 EDRKEARFLLAPTHEEEITSLVAS------------------------------------ 137

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
              A +  +     + +YN +  +Y+R+F  L L  I   A+SG +GG LSHEF +    
Sbjct: 138 --SAGNIGMNQGLDRETYNAVKEAYIRLFDELKLPYIVAAADSGNMGGSLSHEFHLPNSK 195

Query: 217 GETQVFCSKDFMDFPIPS 234
           GE  +             
Sbjct: 196 GEDTIVSCSSCGHVYNEE 213


>gi|32140555|dbj|BAC78194.1| prolyl-tRNA synthetase [Raphanus sativus]
          Length = 220

 Score =  136 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIY 369
              S+   + R +  +I +  D KG+I P  VA  ++ +I +   D   Q   DAC    
Sbjct: 1   WQNSWA-YSTRTIGVMIMTHGDDKGLILPPKVASVQVVVIPVPYKDANTQGIFDACTATV 59

Query: 370 ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           + LS+ G     D       G +++  ++ G PL++ +G + + + +V    R  G +ED
Sbjct: 60  SALSEAGIRAEEDLRDNYSPGWKYSNWEMKGVPLRIEIGPRDLENDQVRTVRRDNGAKED 119

Query: 429 MSLEEVINYASHRFSNNRP 447
           +    ++ +        + 
Sbjct: 120 IPRGSLVEHVKELLEKIQE 138


>gi|218200879|gb|EEC83306.1| hypothetical protein OsI_28675 [Oryza sativa Indica Group]
          Length = 306

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 82/204 (40%), Gaps = 12/204 (5%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  +      A      +  +FD+L    + +   ++    F    ++ L  SA  
Sbjct: 115 NEFGKPWQINEGDGAFYGPKIDIGVFDALKRKFQCATLQLD----FQLPLRFKLTYSA-- 168

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           +     +  V +    +G++  + A++   ++GK   WP  ++P +  + +I ++     
Sbjct: 169 EDEAKLERPVMIHRAILGSVERMFAILLEHYNGK---WPLWLSPRQAIVCSISSNS---V 222

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V ++ R 
Sbjct: 223 EYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVSVRVRD 282

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 +S++++I       +  +
Sbjct: 283 KAELATVSIDDIITRFKEEVAAYK 306


>gi|118431208|ref|NP_147510.2| threonyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|150421682|sp|Q9YDW0|SYT1_AERPE RecName: Full=Probable threonyl-tRNA synthetase 1; AltName:
           Full=Threonine--tRNA ligase 1; Short=ThrRS 1
 gi|262118516|pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
           Thrrs-1 From Aeropyrum Pernix
 gi|116062532|dbj|BAA79787.2| threonyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 471

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 116/367 (31%), Gaps = 53/367 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G+  +   G      +  ++ +   R G   +  P + S +L+  SG  + Y   M  
Sbjct: 38  GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMY- 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN---LPFTFYQIQLKFRDELRPR-FGVMR 151
           L D         P +      +F + +  +R+   LPF  ++     R E     +G++R
Sbjct: 97  LFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR 156

Query: 152 SREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGP----- 201
            R F   DA+         +     + +M +   R+F  LG+  ++  +R          
Sbjct: 157 VRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFK-LGVSSETFKVRLSMSDKSLIG 215

Query: 202 ---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              +G     E    A          K  +D         F                   
Sbjct: 216 KEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAF------------------- 256

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMG 315
               +  KL   +   +   ++  ++G I   F    ++ L      +   G +    + 
Sbjct: 257 ----YGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRL--YDVVREEFGIEEVYIIH 310

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARL 372
              +G++     V      G     P ++AP + ++I +K     D+   D    I   L
Sbjct: 311 RALLGSIERFLGVYLEHRRG---RMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGL 367

Query: 373 SKVGCDV 379
              G  V
Sbjct: 368 LDKGFRV 374


>gi|294011681|ref|YP_003545141.1| prolyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292675011|dbj|BAI96529.1| prolyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 508

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 127/431 (29%), Gaps = 81/431 (18%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
              M  +   +G     P G    + +  ++ +    TG      P       +  E+  
Sbjct: 23  EADMAEESGVRGCMVIRPWGYGIWERMQKLLDDRIKATGHENCYFPLFIPLSYFEKEAEH 82

Query: 86  YDSYGKEMLRLADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            D + KEM  +                    ++ ++  PT E V+   F   ++S+R+LP
Sbjct: 83  VDGFAKEMAVVTHHRLIQKDGRLVPDPDAKLEEPLVVRPTSETVIGAAFSRWVQSWRDLP 142

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               Q     R E+R R   +R+ EFL ++ ++   + E +     KM   Y        
Sbjct: 143 VLINQWANVVRWEMRTRM-FLRTAEFLWQEGHTAHASVEEAMEETLKMLEVYRGFAEEC- 200

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++P+ A   P                E + F       + I +   D   + +  S  
Sbjct: 201 -VALPVIAGEKP----------------ENERFPGAVAT-YSIEAMMQDGKALQAGTSHF 242

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
              T   A      N +    L +          +G            +       DG  
Sbjct: 243 LGTTFSSAQNIKFQNAEGQQELAQTTSWGMSTRMIG-----------GLIMVHGDDDGLR 291

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              ++  Y +                             + ++     D    D C  + 
Sbjct: 292 VPPRIAPYQVVV---------------------------VPMLRDTDEDAAILDYCGDLV 324

Query: 370 ARLSKVG-----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           A L++            D    +  ++       G P+ + VG + V+   V +  R   
Sbjct: 325 AELNRQDVFREPVRALLDRRPAKAANKRWGWVKKGAPIVIEVGGRDVAGGNVSVIRRDRL 384

Query: 425 IREDMSLEEVI 435
            RED  L+  I
Sbjct: 385 YREDGKLDSRI 395


>gi|88602298|ref|YP_502476.1| threonyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|121729157|sp|Q2FPK3|SYT_METHJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88187760|gb|ABD40757.1| Ser-tRNA(Thr) hydrolase [Methanospirillum hungatei JF-1]
          Length = 610

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 135/444 (30%), Gaps = 57/444 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R  E   ++ +   G +         WLP G+   D +           GA  +  P + 
Sbjct: 200 RSKEFVDYEPVSDVGHLR--------WLPRGKLVRDLLADYALSLVLDYGASPVETPVMY 251

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                      D +G+   R    N + M+        M    RS   S  +LP   Y++
Sbjct: 252 DLADKAIFEHADKFGERQYRFKSGN-RNMMLRFAACFGMFTTMRSMHISPNHLPMKMYEL 310

Query: 136 QL-KFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               FR E +    G+ R R F M D +S     E +   + +                 
Sbjct: 311 STYSFRHEQKGEVIGLKRLRAFTMPDMHSLCKDLENALTCFEEQL--------------- 355

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                   IG     +F          VF   +                  +  ++E  +
Sbjct: 356 -------AIGWKTGRDFGTQ----LVAVFRCTEEFYSEYEGWIKKIVKDSGVPILIETLS 404

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YV 312
                     +    D            I+V     FG KY L         DG +    
Sbjct: 405 DRVHYWIAKIDLAAIDGQNRPIENPTVQIDVESSKRFGIKYHLA--------DGTEVYPP 456

Query: 313 QMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            +     G++ RV  A++E++ + K    P  + P ++ +I +  +        + I  +
Sbjct: 457 ILHCSPTGSVERVFCAILENTVNQKVAHLPTWLTPTQVRIIPVTDN---HLGYAKDIAEK 513

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----R 426
           L+K       DD  + +  +   A +      ++VG   ++   + +  R         +
Sbjct: 514 LTKARIRADIDDRDDSLNKKIRAAGMDWVSYVIVVGDSEMNSGNLTVTVRSESEPNKPQK 573

Query: 427 EDMSLEEVINYASHRFSNN--RPV 448
              + E++I       S    RP+
Sbjct: 574 ITCTAEKLIEMIGKETSGKPFRPL 597


>gi|268323710|emb|CBH37298.1| putative glycyl-tRNA synthetase [uncultured archaeon]
          Length = 486

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/495 (16%), Positives = 171/495 (34%), Gaps = 83/495 (16%)

Query: 12  QENPRD--AEIASHK-LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +  P+D  AE+A  +  + +   I+  + G Y + PLG      V    R+   R G  E
Sbjct: 8   KGAPKDEVAELARRRGYLGQAFEIYGAAAGFYDYGPLGAGLKRRVENQWRDFYMREGFYE 67

Query: 69  MSVPTLQSADLWVESGRYDSYGK---------EMLRLADRND------------------ 101
           +   ++    ++  SG  +S+              R+A+  D                  
Sbjct: 68  IETTSVVPRSVFEASGHLESFTDPTVMCTRCKNFFRVAEDLDVGKKCPDCGGVLEAAGEI 127

Query: 102 --------------------KAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFR 140
                                     P   + +   F+  ++  R+ LPF   QI   +R
Sbjct: 128 NLMFPTRIGVPKAGSEEKTKSEAYLRPETAQGIFLNFQRLLRFNRDKLPFGIIQIGKAYR 187

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKH-SYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +E+ PR  ++R REF + +   F    E + H  +  +    LR+        +P  + +
Sbjct: 188 NEISPRQSLIRLREFTLAEVEVFVAPSEKNSHPEFEAVADRKLRL--------VPASSNT 239

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               G  ++E   + +   + +  ++            +F + + +     ++       
Sbjct: 240 NYELGIENYEDKSVGEAVRSGIIANEYLGYHIAKV--DEFLEGLGIPRAKLRFRQHQRDE 297

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-------TFKGADGKDHYV 312
              +    +D+   + R     I VG        Y L   A       + +   GK    
Sbjct: 298 MAHYATDCWDAEFLSDRYGWMEI-VGVADR--GDYDLKAHASSSNTDMSVRTEQGKIIP- 353

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDA 364
            +     G  R+  A++ES++  +         +     +AP K ++  +    +  ++ 
Sbjct: 354 HVIEPSYGIDRIFYALLESAYYKEQVGKENRQVLKLKSELAPIKAAVFPLLNKAE-LKEK 412

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++  L      V +D  G  IG ++   D +G P  + +  + + D  V I+ R T 
Sbjct: 413 AREVFQNLRDASIFVEYDGSG-SIGRRYRRQDEIGTPYCITIDYETLEDDAVTIRERDTM 471

Query: 425 IREDMSLEEVINYAS 439
            +  + + EV    +
Sbjct: 472 KQVRVPIAEVEKVLA 486


>gi|58699329|ref|ZP_00374107.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58534152|gb|EAL58373.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 356

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R+K  L    E  ++AE   H+ + +      I + + G   W   G    + + + IR+
Sbjct: 221 RNKDELNAYLECLKEAEKRDHRKIAKDMDLFHIQEEAVGQVFWHEQGYILYNVLESYIRK 280

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +    G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF 
Sbjct: 281 KLINNGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFN 340

Query: 120 SHIKSYRNLPFTFYQI 135
           SH +SYR+LP     +
Sbjct: 341 SHTRSYRDLPIRMADL 356


>gi|254508889|ref|ZP_05120998.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219548203|gb|EED25219.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 129

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G++     ++   + G    W   ++P +  ++NI        D  +++  +L KVG
Sbjct: 1   AILGSLERFIGILIEEYFGFFPTW---LSPEQAVIMNITDK---QADYAQEVAQKLQKVG 54

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D   E+IG +     L   P  ++ G + +   ++ ++ R         +++ I+
Sbjct: 55  IRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGKDLGKFKVDDFIS 114

Query: 437 YASHRFSNNR 446
           Y     S  +
Sbjct: 115 YIQDEISTRK 124


>gi|298675600|ref|YP_003727350.1| glycyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288588|gb|ADI74554.1| glycyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 582

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 90/543 (16%), Positives = 180/543 (33%), Gaps = 138/543 (25%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGK---- 91
            G Y + PLG      +  I R+    + G +E+  PT+   D++  SG    +      
Sbjct: 28  AGFYDYGPLGSTLKRRIEQIWRDMYVVQEGFMEIETPTIGIEDVFRASGHIGGFSDPLCE 87

Query: 92  -----EMLR----LADRNDKAMIYGPTH-------------EEV----------MTDIFR 119
                E  R    + D  D       ++               V             +F 
Sbjct: 88  CEECGEAFRADHLVEDELDIESAEAMSNNILEDSIKDNEIPCPVCGGKFGSVYSFNLMFN 147

Query: 120 SHI--------------------------KSYRN-LPFTFYQIQLKFRDELRPRFGVMRS 152
           S+I                          + YR  LPF   QI   +R+E+ PR GV+R 
Sbjct: 148 SNIGPGSGRPAYLRPETAQGMFINFLRLARYYREKLPFGVTQIGKSYRNEISPRQGVIRL 207

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF--HRLGLKSIPMRAESGPIGGDLSHEF 210
           REF   +A  F    + +   ++K   + L ++     G    P+R +     G ++HE+
Sbjct: 208 REFTQAEAEIFIPPEDKTHPEFDKYADTVLNMYIEDDNGGVVRPIRLDDAVKEGYIAHEY 267

Query: 211 ---------------------------------IVLADTGETQVFCSKDFMDFPIPSENT 237
                                               AD  + ++   +      +   + 
Sbjct: 268 LAYHIALTKDFLLRIGINPDKLRFRQHKKDEMAHYAADCWDAEIESDRFGWIETVGIADR 327

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN------------------KRVSA 279
              D+ +         + Y    +      F   P+                   K++  
Sbjct: 328 TNYDLKAHTDTSGTELSIYREYEEPETVNQFTVKPDMSKLGPSYKGKAKTIAEKLKQLPP 387

Query: 280 RGIEVGHIFYF--GTKYSLPMSATFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESS 332
             +E  +I     G +Y++P        +     G+  +  +     G  R++  V+E +
Sbjct: 388 EELEKDNIQVNVEGEEYTVPSDMVEFTEETVKVSGETVFPHVIEPSYGIDRIIYCVLEHA 447

Query: 333 HDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++ + I             + + V+P +++++ + +   + +     I AR  K G  V 
Sbjct: 448 YNKELINEDGEEDYRIILRFKNEVSPIQVAVLPLMSKSDLIKP-ARDISARFRKKGLMVS 506

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +DD G  IG ++   D +G P  V +  + + D+ V I+ R T  +  +S + + +   +
Sbjct: 507 YDDSG-TIGRRYRRNDEIGTPYSVTIDYQTLEDNTVTIRDRDTMKQIRLSKDNIEDTVYN 565

Query: 441 RFS 443
             +
Sbjct: 566 LIN 568


>gi|226321240|ref|ZP_03796773.1| Threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226233369|gb|EEH32117.1| Threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 231

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 89/263 (33%), Gaps = 35/263 (13%)

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G  +      + P                  +   +    +  +        D  
Sbjct: 1   MWSKFGFSNPKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEETLSDFE 43

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I +   A Y    D+      DSL    ++S    +    F    ++++    T+ 
Sbjct: 44  VPYEIDKGGGAFYGPKIDLKIV---DSLEREWQMSTIQFD----FNLPERFNM----TYT 92

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DGK+     +    +G++     ++   + G   +W   ++P ++ +I +     +  
Sbjct: 93  AEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW---LSPVQVVIIPVNN---IVE 146

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ I+ R 
Sbjct: 147 DYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERISIRTRT 206

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E + +   +  + 
Sbjct: 207 NEQINGIKLDEALKFILFKIRDK 229


>gi|307292835|ref|ZP_07572681.1| Proline--tRNA ligase [Sphingobium chlorophenolicum L-1]
 gi|306880901|gb|EFN12117.1| Proline--tRNA ligase [Sphingobium chlorophenolicum L-1]
          Length = 527

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 126/428 (29%), Gaps = 81/428 (18%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
              M  +   +G     P G    + +  ++ +    TG      P       +  E+  
Sbjct: 42  EADMAEESGVRGCMVIRPWGYGIWERMQKLLDDRIKATGHENCYFPLFIPLSYFEKEAEH 101

Query: 86  YDSYGKEMLRLADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            D + KEM  +                    ++ ++  PT E V+   F   ++S+R+LP
Sbjct: 102 VDGFAKEMAVVTHHRLIQKEGRLVPDPDAKLEEPLVVRPTSETVIGAAFSRWVQSWRDLP 161

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               Q     R E+R R   +R+ EFL ++ ++   + + +     KM   Y        
Sbjct: 162 VLINQWANVVRWEMRTRM-FLRTAEFLWQEGHTAHSSVDEAMEETLKMLEVYRSFAEEC- 219

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++P+ A   P                E + F       + I +   D   + +  S  
Sbjct: 220 -VALPVIAGEKP----------------ENERFPGAVAT-YSIEAMMQDGKALQAGTSHF 261

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
              T   A      N +    L +          +G            +       DG  
Sbjct: 262 LGTTFSSAQNIRFQNAEGQQELAQTTSWGMSTRMIG-----------GLIMVHGDDDGLR 310

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              ++  Y I                             + ++     D    D C ++ 
Sbjct: 311 VPPRVAPYQIVV---------------------------VPMLRDTDEDAAVLDYCGELV 343

Query: 370 ARLSKVG-----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             L++            D    +  ++       G P+ + VG + V+   V +  R   
Sbjct: 344 TELNRQDVFREPVRALLDRRPAKAANKRWGWVKKGAPVVIEVGGRDVAGGNVSVIRRDRL 403

Query: 425 IREDMSLE 432
            RED  L+
Sbjct: 404 YREDGKLD 411


>gi|163847354|ref|YP_001635398.1| proline--tRNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222525199|ref|YP_002569670.1| Proline--tRNA ligase [Chloroflexus sp. Y-400-fl]
 gi|163668643|gb|ABY35009.1| Proline--tRNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222449078|gb|ACM53344.1| Proline--tRNA ligase [Chloroflexus sp. Y-400-fl]
          Length = 525

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 1/146 (0%)

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            P +   + A+G++  + +    I    ++  V+E  HD +GI+WP ++APF I L+ + 
Sbjct: 381 QPTALLVQDAEGQNRPLIITGLEIDLEPLLYLVVEQHHDERGIVWPAAIAPFAIHLVTLG 440

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +    A   + A L   G  V  DD  E+ G +F  ADL+G P +V++  K ++ ++
Sbjct: 441 RG-EAVVTAGHALAAMLQTAGWHVLIDDRDERAGVKFNDADLIGAPWRVVISEKLLAANQ 499

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           +EI+HR       +    ++     R
Sbjct: 500 LEIRHRTAAQATVIDQSALLTVIGQR 525



 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 31/190 (16%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + +  F   L++ P +A+  + +L+ R GMI     G  + LPLG   L  ++  +    
Sbjct: 3   QLATLFGRTLRQAPAEADTRAAQLLWRAGMIRALDNGEPALLPLGSAVLRRLSHHLTTAI 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+ +P   +A                               T    +T + R  
Sbjct: 63  QAGGAQEVYLPNTSTA-------------------------------TWPATVTALARRE 91

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I SYR LP   +  + + R + R RF ++                   ++          
Sbjct: 92  IDSYRQLPQAIWGQRRRKRPQSRQRFSLLELPTPTTLSWAGLARDASQAQALLETTLQHL 151

Query: 182 LRIFHRLGLK 191
               H  GL 
Sbjct: 152 RHALHECGLT 161


>gi|300708012|ref|XP_002996195.1| hypothetical protein NCER_100753 [Nosema ceranae BRL01]
 gi|239605474|gb|EEQ82524.1| hypothetical protein NCER_100753 [Nosema ceranae BRL01]
          Length = 499

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GI+     + G  +S       +  DG   +V   S+G+   R +   +    D KG++
Sbjct: 226 KGIQAATSHHLGQNFSKMFDVKVQVDDGVSDFVYQNSWGMT-TRSLGIAVMIHSDDKGLV 284

Query: 340 WPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
            P  VA  ++ +I                     +I  +L      V  DD     +G +
Sbjct: 285 LPPKVAKIQVVIIPCGLSVKTSTEDKNKLLKVINRIKNQLLLSKIRVHIDDRDNVTVGYK 344

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F   ++ G P+++ +G K +  +++ I  R TG +   ++++ +        N+
Sbjct: 345 FNHWEIRGVPIRIEIGLKDLEKNEMCIYKRNTGTKNQYTIDDNVTEKIQLLIND 398



 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++++   +  +  KG Y   P G    + +      E  + G  E   P L     L  
Sbjct: 22  QVLVKGEFLDYYDVKGCYILRPNGYFIWNEIRKWFTNEIEKLGVEECLFPMLIPKTFLEK 81

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +     +   + +   PT E VM   F   I S+R+LP    Q   
Sbjct: 82  EESHISDFSPEVAWITKCGNEVLHEPVAIRPTSETVMYPSFARWISSHRDLPLKVNQWCN 141

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R ELR    ++RS+E L ++ ++  +  E +      +   Y R++  L
Sbjct: 142 ILRWELRGTTPLIRSKEILWQEGHTAHIDKEEADKEVLDILDLYYRMYKEL 192


>gi|221054768|ref|XP_002258523.1| prolyl-t-rna synthase [Plasmodium knowlesi strain H]
 gi|193808592|emb|CAQ39295.1| prolyl-t-rna synthase, putative [Plasmodium knowlesi strain H]
          Length = 552

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 147/420 (35%), Gaps = 58/420 (13%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             ++ + AS +L+ R   I   + G+Y+ LPLG K+++ +   +     R  +  + +  
Sbjct: 100 EKKNGDKAS-ELLQRANYIKDVN-GLYNLLPLGYKSIEKLIHFLNIHLKRVNSHGLFMSI 157

Query: 74  LQSADLWVESGRYDSYGKEMLRL--------------------ADRNDKAMIYGPTHEE- 112
           LQ+   W  S R   Y  E L +                        D  +I  PT EE 
Sbjct: 158 LQAKKWWNISDRSKLYSDEFLYVYKQKQQKGDMSKVNETVMTKKKMEDDGLILSPTCEEQ 217

Query: 113 ---VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
              ++  ++  +I + ++LP   +Q   KFR+E R    + +S+EFLMKD YSF      
Sbjct: 218 AICLINQVYNENIPA-KSLPLLIHQFNYKFRNEKRLEKTLFKSKEFLMKDGYSFHSNDIC 276

Query: 170 SKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDF 227
              +Y+     Y +IF  L L   +  + +   +    SHEF VL   G+  +       
Sbjct: 277 LNETYDSYKECYGKIFSDLKLPFKVTKKRKMDKMNALESHEFQVLCRDGKYKEAAHIFKL 336

Query: 228 MDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            D+        + +     N+I+                  F      +           
Sbjct: 337 GDYYSKKLGIKYLNKRNEKNNILMGSYGIGIYRLLYFLVDSFYDDDGIRLPEQIA----- 391

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                     P S      + +  Y       I  M  V   +E+         P+   P
Sbjct: 392 ----------PFSVYLIQTNQRSKYSATKVAKIVKMAQVTDAVEAMDA------PNMATP 435

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
                  + ++D         +Y        D+++DD    +  +    DL+G P ++I+
Sbjct: 436 ------PLNSNDVEYV-LTLWLYNTFKNSNVDIYYDDTDLHLSRKLKNCDLIGVPNRIII 488


>gi|322818062|gb|EFZ25583.1| prolyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 378

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 86/307 (28%), Gaps = 64/307 (20%)

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                 R E       +R+REFL ++ +    T E       ++   Y  ++  L     
Sbjct: 1   MWNNVIRWEFSHPTPFIRTREFLWQEGHCAWQTEEECSQEVLEILDHYAAVYEEL----- 55

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                                                 +    T+ +            T
Sbjct: 56  ---------------------------------LAVPVVKGRKTEKEKFAGGYYTTTVET 82

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
              A           +      ++          F    K            DG      
Sbjct: 83  YIAAIGRGCQGGTSHNLGQNFGKMFNI------SFQDPEK-----------NDGSTLIPW 125

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQV---CRDACE 366
             S+G+ + RV+  +     D  G++ P  VA  ++ +I +       D+      + C+
Sbjct: 126 QNSWGL-STRVIGVMTMVHGDDSGMVLPPRVASVQVVIIPVGITKNTTDEERKSLLEGCK 184

Query: 367 KIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +   L   G     D       G +F   ++ G P++V +G + ++  K+ +  R  G 
Sbjct: 185 TLERVLVSGGIRAKADLRDNYSPGWRFNHWEVKGVPVRVELGPRELASLKISLVLRHDGS 244

Query: 426 REDMSLE 432
           R  +  +
Sbjct: 245 RRSLLWD 251


>gi|299739951|ref|XP_001840374.2| proline-tRNA ligase [Coprinopsis cinerea okayama7#130]
 gi|298404017|gb|EAU81430.2| proline-tRNA ligase [Coprinopsis cinerea okayama7#130]
          Length = 718

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 14/184 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLP--MSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHD 334
           S RGI+       G  +S P   +   +  +     YV   S+G+ + R +   +    D
Sbjct: 433 SGRGIQAATSHCLGQNFSRPEMFNIFVEDPENPGKKYVWQNSWGL-STRAIGVCVMVHGD 491

Query: 335 GKGIIWPDSVA-------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-E 386
            +G++ P  VA       P  I+        +   DACE + ++L +       D     
Sbjct: 492 NQGLVLPPRVASVQVVVVPCGITAKTSDEERKRINDACEALASKLREGDIRAKADLRDGY 551

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             G +F   +  G P+++ +G + +  +  + ++ R TG++  + L+ +         N 
Sbjct: 552 TPGWKFNEWEQKGVPVRLEIGPQDIKKNQTLSVR-RDTGVKAPLPLDGITATVQDLLKNI 610

Query: 446 RPVL 449
           +  L
Sbjct: 611 QSDL 614



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 14/177 (7%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +++  M+  +S  G Y   P      + +      E  + G      P   S   L  E 
Sbjct: 225 LIKADMLDYYSVSGCYILKPWSYSIWEEIQTWFNAEIKKLGVQNSYFPMFVSQSVLEREK 284

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI--------FRSHIKSYRNLPFT 131
              + +  E+  +        ++ +   PT E  M  +        +   I+S+R+LP  
Sbjct: 285 DHIEGFSPEVAWVTRAGQSDLEEPIAIRPTSETAMYPLSPSNPPPDYAKWIRSHRDLPLK 344

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             Q     R E +     +R+REFL ++ ++  LT E +     ++   Y +++  L
Sbjct: 345 LNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAFLTKEEADTEVRQILDLYRQVYEDL 401


>gi|19074055|ref|NP_584661.1| PROLYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74621295|sp|Q8SSD7|SYP_ENCCU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19068697|emb|CAD25165.1| PROLYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 520

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH--YVQMGSYGIGAMRVVAAVIESSHDG 335
           S RG++       G  +S          +G +   +V   S+GI   R +        D 
Sbjct: 243 SGRGVQAATSHSLGQNFSRMFDIKADTDEGSESSSFVYQNSWGIT-TRSIGIAAMIHSDN 301

Query: 336 KGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
            G++ P  VA  ++ ++         K   +  R     +  +L   G  V  DD     
Sbjct: 302 LGLVLPPRVAMTQVVIVPCGITTASSKDDTESLRAYINGVCVQLKNSGVRVHLDDRSNVT 361

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            G +F   ++ G PL++ +G K ++ S+  +  R T  ++ +S+E + +      
Sbjct: 362 AGFKFNHWEIRGVPLRLEIGFKDMASSEACLVRRDTRAKKQVSVEGIAHTVMEEI 416



 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ +  MI  ++ KG Y   PLGQ     ++    ++    G  E   P L     L +
Sbjct: 41  QVITKGEMIDYYAIKGCYVMRPLGQFVWKCIHKWFTKKIEELGVQECYFPMLVPKSMLEM 100

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    +++  E+  +        +  +   PT E ++   F   I+S+R+LP    Q   
Sbjct: 101 EKDHVENFSPEVAWITKCGNQVLEDPVAVRPTSETIIYPSFSKWIRSHRDLPLKLNQWCS 160

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R EL      +R +EFL ++ ++  LT + S      +   Y +I+  L
Sbjct: 161 VLRWELHGTLPFIRGKEFLWQEGHTAFLTRKESDEEVLAILDLYSQIYSEL 211


>gi|240282267|gb|EER45770.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325088406|gb|EGC41716.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 606

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 17/188 (9%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S   S T +    K        +V   S+G+ + R +  ++  
Sbjct: 311 TGRGIQGGTSHGLGQNFSKMFSITVEDPSAKPDEKKPALHVWQNSWGL-STRTIGIMVMV 369

Query: 332 SHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++ +        A         + + A L   G  V  D  
Sbjct: 370 HGDDRGLVIPPRVADIQTVIVPVGTGAKTTDAEKASLMAEIDALAAVLEAAGVRVEVDKR 429

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYASHR 441
               G +F   +L G PL++  G    +   V    R       +  + + E+       
Sbjct: 430 DYTPGWKFNDWELHGVPLRLEFGPGESAGHYVTASRRDILGKDGKSTIPITELAAQVPAL 489

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 490 LETIQADL 497



 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     +   + G    S P   S D L 
Sbjct: 108 QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQNWFNDRIKKMGVKNCSFPLFVSEDVLK 167

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 168 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 227

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +R+REFL ++ ++  LT  G+     ++   Y  ++  L
Sbjct: 228 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEGGAHEEVLQILEHYAHVYEEL 279


>gi|124507052|ref|XP_001352123.1| prolyl-t-RNA synthase, putative [Plasmodium falciparum 3D7]
 gi|23505153|emb|CAD51934.1| prolyl-t-RNA synthase, putative [Plasmodium falciparum 3D7]
          Length = 579

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 23/258 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F  I  +N +     + +L+ R   I   + GIY+ LPLG + ++ +   + +   +  +
Sbjct: 65  FNRIFNDNIKSNGDKTSELLQRANYIRDVN-GIYNILPLGFRVINKIIDFLNKHLEKLNS 123

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL-----------------ADRNDKAMIYGPT 109
             MS+  LQ+  LW  S R   Y  E L +                     D   I  PT
Sbjct: 124 HAMSLSILQAKKLWNISDRSKLYSDEFLYVYKQKQSKNDKSSEESLKKKIEDDGYILSPT 183

Query: 110 HEEVMTDIFRSHIKSY---RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            EE    +           + LP   +Q   KFR+E R    + +S+EFLMKD YSF   
Sbjct: 184 CEESSLSLINQIYNENITIKCLPLLIHQYNYKFRNEKRFEKSLFKSKEFLMKDGYSFHSN 243

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGE-TQVFCS 224
            +    +Y K    Y  IF  L L   I  + +   +    SHEF VL+  G+  +    
Sbjct: 244 EKCLNETYEKYKECYKNIFEELKLSFNIIKKRKKDKMNALESHEFQVLSRDGKYKEAAHI 303

Query: 225 KDFMDFPIPSENTDFDDI 242
               D+     +  + D 
Sbjct: 304 FKLGDYYSNKLDIKYLDK 321



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 41/92 (44%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E  HIF  G  YS  +   +     +   + MGSYGIG  R++  +IE+ +D +GI  P 
Sbjct: 299 EAAHIFKLGDYYSNKLDIKYLDKKNEKKNILMGSYGIGIYRLLYFLIENFYDEEGIKLPQ 358

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            VAPF + LI      +       KI      
Sbjct: 359 QVAPFSVYLIQTNQKSKYSATKISKILNMYKD 390



 Score = 41.8 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 29/101 (28%)

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG----SKFVS----------- 412
           ++        D+++DD    +  +    DL+G P ++I+      K V            
Sbjct: 477 LFNTFKNKNVDIYYDDTDLHLSRKLKHCDLIGAPNRIIINLSNLDKKVKVPTNFYNYIDN 536

Query: 413 --------------DSKVEIKHRLTGIREDMSLEEVINYAS 439
                         +  +E KHR +  ++ M++ E+  Y  
Sbjct: 537 SDNILLNKLYLTFQNITIEYKHRFSQEKKIMTIRELFKYFK 577


>gi|119191888|ref|XP_001246550.1| hypothetical prolyl-tRNA synthetase [Coccidioides immitis RS]
          Length = 603

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S     T +    K        +V   S+G+ + R +  ++  
Sbjct: 307 TGRGIQGGTSHGLGQNFSKMFGITVEDPTSKPDEKKPPLHVWQNSWGL-STRTIGVMVMV 365

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++ +    +   D    I A        L   G  V  D  
Sbjct: 366 HSDNRGLVLPPRVADVQTVIVPVGLTAKTPDDVRASINAEIDHLASVLEAAGIRVEIDKR 425

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEVINYASH 440
            G   G +F   +L G PL++  G    S   V    R       +  + + E+      
Sbjct: 426 EGYSPGWKFNDWELKGIPLRLEFGPGESSGGFVTTSRRDIPGKEGKSTIPIAELATAVPA 485

Query: 441 RFSNNRPVL 449
                +  L
Sbjct: 486 LLETIQADL 494



 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +   ++  + G    S P   S D L 
Sbjct: 104 QQVLLKGDMLDYYDVSGCFVLKPHSFFIWEEIQSWFNDKIKKMGVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGSSELEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +R+REFL ++ ++  LT   ++    ++   Y  ++ +L
Sbjct: 224 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEAAAREEVLQILQHYAHVYEQL 275


>gi|320036438|gb|EFW18377.1| prolyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 603

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S     T +    K        +V   S+G+ + R +  ++  
Sbjct: 307 TGRGIQGGTSHGLGQNFSKMFGITVEDPTSKPDEKKPPLHVWQNSWGL-STRTIGVMVMV 365

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++ +    +   D    I A        L   G  V  D  
Sbjct: 366 HSDNRGLVLPPRVADVQTVIVPVGLTAKTPDDVRASINAEIDHLASVLEAAGIRVEIDKR 425

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEVINYASH 440
            G   G +F   +L G PL++  G    S   V    R       +  + + E+      
Sbjct: 426 EGYSPGWKFNDWELKGIPLRLEFGPGESSGGFVTTSRRDIPGKEGKSTIPIAELATAVPA 485

Query: 441 RFSNNRPVL 449
                +  L
Sbjct: 486 LLETIQADL 494



 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +   ++  + G    S P   S D L 
Sbjct: 104 QQVLLKGDMLDYYDVSGCFVLKPHSFFIWEEIQSWFNDKIKKMGVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGSSELEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +R+REFL ++ ++  LT   ++    ++   Y  ++ +L
Sbjct: 224 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEAAAREEVLQILQHYAHVYEQL 275


>gi|213619333|ref|ZP_03373159.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 115

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 3/107 (2%)

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            +P  +AP ++ ++NI        +   ++  +L   G  V  D   E+IG +     L 
Sbjct: 5   FFPTWLAPVQVVVMNIT---DSQSEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLR 61

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             P  ++ G K V   KV ++ R       + + +VI        + 
Sbjct: 62  RVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDVIEKLQQEIRSR 108


>gi|322368025|ref|ZP_08042594.1| glycyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552041|gb|EFW93686.1| glycyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 576

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 95/570 (16%), Positives = 176/570 (30%), Gaps = 150/570 (26%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREE-QNRTGAIEMSVPTLQS 76
           +L  R G   Q S       G Y + P G     N+    R+  Q + G  E+  PT+  
Sbjct: 7   ELAKRRGFFFQSSEAYGGVSGFYVYGPQGAALKRNIEDSWRDRFQVQEGHREIEAPTVMP 66

Query: 77  ADLWVESGRYDSYGKEM----------------------------LRLADRND---KAMI 105
             ++  SG  D++  +M                            + L++  D   +  +
Sbjct: 67  EPVFEASGHLDTF-DDMLVECPECGESHRADHLIEDNTDIEDAEAMPLSEVGDLIAEYDL 125

Query: 106 YGPTHE--------EVMTDIFRSHI---------------------------KSYRNLPF 130
           + P+ E        E    +F + I                            +   LPF
Sbjct: 126 HCPSCETPLAGEPVEDFNLMFETDIGPGSGHPGYLRPETAQGIFVEFPRLKEYARNQLPF 185

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV----------- 179
              QI   +R+E+ PR  ++R REF   +   F + PE  +   +++             
Sbjct: 186 GITQIGTAYRNEISPRKSIIRVREFTQAELEHF-IDPETDEPPLHRVEDVEVTLYSAVEQ 244

Query: 180 -----SYLRI--------------------------FHRLG-----LKSIPMRAESGPIG 203
                 YLR                           + R+G      +     A      
Sbjct: 245 NDDDGDYLRTTIGEAVEEGIIASDWVAYYLGVGQEWYERIGVDMDRFRFRQHLAGERAHY 304

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +     D    ++       D+ +   +   D+  ++    ++      AT D  
Sbjct: 305 ASDCWDAEAEIDGDWIEITGYAYRSDYDLSKHDKYSDEDFTIFRQYDEPKVVERATVDPD 364

Query: 264 NEKLFDSLPENKRVSARGIE-------------VGHIFYFGTKYSLP-----MSATFKGA 305
              L           A  ++             V  +   G  Y++P      S      
Sbjct: 365 MSYLGPEFGGAAADIAEALQTLAERDRTAFDGDVVTVEADGDTYAIPVEKTGFSVEEVKE 424

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAH 357
            G+     +    IG  RV+  V++ ++D   I             +AP  + +  +   
Sbjct: 425 SGEHIVPHVVEPSIGIGRVLYTVLDHAYDTDEIEGETRTRLSLDPEIAPTTVGVFPLMDK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D    +    I A L   G DV +DD G  IG ++   D +G P  V V  + + D  V 
Sbjct: 485 D-GMGETARDIAAELRSHGLDVVYDDSGN-IGRRYRRQDEVGTPFCVTVDYEGLEDDTVT 542

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           ++ R +  +  ++++++ N  +   S  R 
Sbjct: 543 LRERDSTEQVRVAVDDLPNLIADLRSGERA 572


>gi|294463365|gb|ADE77216.1| unknown [Picea sitchensis]
          Length = 215

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 76/201 (37%), Gaps = 12/201 (5%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +     +      A      +  +FD+L    + +   ++    F    ++ L  S   
Sbjct: 24  NAFGKPWQINEGDGAFYGPKIDITVFDALKRKFQCATIQLD----FQLPIRFDLSYST-- 77

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           +    ++  V +    +G++  + A++   + GK   WP  ++P +  +  +    +   
Sbjct: 78  EDEAKRERPVMIHRAILGSVERMLAILLEHYAGK---WPFWLSPRQAIVCPV---SEKSS 131

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  ++ + G  V  D    +I  +   A L  +   ++VG +  +  +V ++ R 
Sbjct: 132 DYALRVRDQIHQAGYYVDVDTSDRKIQKKIREAQLAQYNYILVVGEEEANTGQVSVRIRD 191

Query: 423 TGIREDMSLEEVINYASHRFS 443
               E  S++E++        
Sbjct: 192 KSAHEVRSMDELLKLFREEIE 212


>gi|116626061|ref|YP_828217.1| anticodon-binding domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229223|gb|ABJ87932.1| Anticodon-binding domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 480

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +  G Y +   R++   IE+ +D  G+  P  VAPF + +    A D    +A E+IYA
Sbjct: 350 RMTAGLYRLALDRILTTAIEAGNDKDGMALPAGVAPFDVVVSVAVAGDAAQMEAAERIYA 409

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             +  G D+ +DD  E+ G +F  ADL+G P +V VG K ++   VE+  R T +   + 
Sbjct: 410 ECTAAGMDLLFDDRDERPGVKFKDADLIGVPWRVTVGKK-IAGGLVELVERKTKVVTAVP 468

Query: 431 LEEVINYASH 440
           +  V+     
Sbjct: 469 IASVMEAIDQ 478



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 84/233 (36%), Gaps = 66/233 (28%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P L+ENP DAE  S +L++R G       G+Y WLPLGQ+A+  +  I R+E
Sbjct: 7   MRWSRLFIPTLRENPADAETVSQQLLVRAGYARAVKTGVYGWLPLGQRAMAKIQRIARQE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +    +A+                                      I R 
Sbjct: 67  LTALGGQEVGLDAADAAE--------------------------------------IGRG 88

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+  ++LP  +      FR E      ++R R+F   D Y F             M   
Sbjct: 89  EIRGAKSLPQIW------FRVEA----PLLRRRQFAGLDVYGFGEDA-------GAMREC 131

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           + RI  R G+ ++ +              F  + + G   V   +       P
Sbjct: 132 FQRILDRCGVSALEVE-----------DAFFAVMEAGTDTVVVCRGCGYAASP 173


>gi|68475162|ref|XP_718299.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|68475355|ref|XP_718200.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46439957|gb|EAK99268.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46440060|gb|EAK99370.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
          Length = 169

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 6/160 (3%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K +   L +     +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +  
Sbjct: 15  KSYGNQLSKFKYSKQIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEI 74

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IK 123
              E+S+  +   +LW  + R+D   +E+ +L        +  PT EE +T+  +   ++
Sbjct: 75  QFEEVSLSLISHKELWKLTNRWDQ--EEIFKLV---GDEYLLVPTAEEEITNYVKKQFLE 129

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           SY+N P   YQI  KFR+E RPR G++R +EFLMKDA  F
Sbjct: 130 SYKNFPLALYQINPKFRNEKRPRGGLLRGKEFLMKDALFF 169


>gi|302389803|ref|YP_003825624.1| YbaK/prolyl-tRNA synthetase associated region [Thermosediminibacter
           oceani DSM 16646]
 gi|302200431|gb|ADL08001.1| YbaK/prolyl-tRNA synthetase associated region [Thermosediminibacter
           oceani DSM 16646]
          Length = 489

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A+ E   D  G+IWPD +AP+K+ +I +   D+   D   K+Y  L+K+      DD
Sbjct: 364 LILAIAEKHCDDSGLIWPDFIAPYKVVVIPVNTKDERLLDRSIKVYEELNKIMP-TIIDD 422

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +  G +F  A+LLGFP+++ +G + +     EI  R TG   ++    +        +
Sbjct: 423 RPQSPGVKFKDAELLGFPIRITIGPRSLEKGVAEINLRRTGEMVEVEFGRITEKVCEMLN 482


>gi|225680119|gb|EEH18403.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 496

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 17/188 (9%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S     T +    K        +V   S+G+ + R +  ++  
Sbjct: 201 TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPALHVWQNSWGL-STRTIGIMVMV 259

Query: 332 SHDGKGIIWPDSVAPFKISLINI-----KAHDQVCRDACE--KIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  +I +         +      E   + A +   G  V  D  
Sbjct: 260 HGDDRGLVLPPRVADVQTVIIPVGITAKTTDKERASLYAEIDALAAVIEDAGVRVEVDKR 319

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYASHR 441
               G +F   +L G PL++  G    +   V    R       +  + + E+       
Sbjct: 320 DNSPGWKFNDWELRGIPLRLEFGPGESTGHFVTTSRRDIPGKDGKSTIPISELKTQVPAL 379

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 380 LETIQADL 387



 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%)

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
                + ++ +   PT E VM   +   I+S+R+LP    Q     R E +     +R+R
Sbjct: 75  FPGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNPQPFLRTR 134

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           EFL ++ ++  LT   ++    ++   Y  ++  L
Sbjct: 135 EFLWQEGHTAHLTEAAAREEVLQILEHYAHVYEEL 169


>gi|121716703|ref|XP_001275886.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119404043|gb|EAW14460.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 608

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S     T +    K        +V   S+G+ + R +  ++  
Sbjct: 303 TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPEEKKPPLHVWQNSWGL-STRTLGVMVMI 361

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++ +    +   +  EK+YA        L   G     D  
Sbjct: 362 HSDNRGLVLPPRVAETQTIIVPVGITAKTTEEDREKLYAEIDGLVSVLKAAGVRADSDKR 421

Query: 385 G-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEV 434
                G +F   +L G PL++  G    +   V    R       +  + + E+
Sbjct: 422 DGYSPGWKFNDWELRGVPLRIEFGPGESAGQFVTAARRDIPGKDGKSTIPIAEL 475



 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G +   P      + +      E  + G    S P   S D L 
Sbjct: 100 QQVLTKGDMLDYYDVSGCFILKPASYSIWEEIQQWFNAEIKKIGVKNCSFPLFVSEDVLQ 159

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 160 REKDHIEGFAAEVAWVTHAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 219

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +R+REFL ++ ++  LT   ++     +   Y RI+  L
Sbjct: 220 SVVRWEFKHPQPFLRTREFLWQEGHTAHLTEGAAREEVLHILDLYARIYEEL 271


>gi|12045139|ref|NP_072950.1| prolyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|255660459|ref|ZP_05405868.1| prolyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351169|sp|P47525|SYP_MYCGE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1045979|gb|AAC71505.1| prolyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078657|gb|ABY79275.1| prolyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 483

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/448 (13%), Positives = 150/448 (33%), Gaps = 91/448 (20%)

Query: 24  KLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ-----------------NRTG 65
           +L+++  +I H   KG   +L         +  +  +                       
Sbjct: 14  QLLVKAKLICHGEVKGTVCFLNNSWGLWMEIQQLYNDAIANKNQLSAIALTKFQPTTSFC 73

Query: 66  AI--EMSVPTLQ-SADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIF 118
               ++ +PTL   ++   E      +  E+  +     K     ++  PT E    +++
Sbjct: 74  YQVFQVQLPTLSFYSEYQKEKTHIKGFNPELFLINQVGQKQLNDPLVLRPTSEIAFCNLW 133

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +    SY +LP  + Q    FR E +     +R+ EF  ++ +   +    S+ +     
Sbjct: 134 KKQELSYHDLPLIYNQWTQVFRAE-KNTRPFLRNSEFYWQETHGLFVDQSQSEQA----A 188

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +S+  ++  L +  + + A  G      S +F    +T   +                  
Sbjct: 189 ISFWNLYQDLIINKLCIPAFVGL--KSESEKFAGAKNTWTIEAI---------------- 230

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                                    + ++       G  ++   
Sbjct: 231 -------------------------------------MPDGQSLQCATSHDLGDTFTKSF 253

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL-INIKAH 357
           + +++    +       S G+ + R++ A+  +  D  G++ P  +A  ++ L +  K +
Sbjct: 254 TISYQSKTNQKMTPSSFSCGM-STRILGAIFLTHSDDYGLVLPWYLASKQVKLYLFDKNN 312

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   R     +   L K+     + ++  Q+G Q    ++ G PLQ+IV     ++  + 
Sbjct: 313 NPKTRALAFLVKDFLEKLKIRFSFIEINNQLGKQLLKGEIEGIPLQMIVD----NEKTIN 368

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I +RLT ++  ++   +     +  +N 
Sbjct: 369 IFNRLTRLKTSLTFANLQTEFVNLVNNY 396


>gi|225559335|gb|EEH07618.1| prolyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 606

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 14/158 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S     T +    K        +V   S+G+ + R +  ++  
Sbjct: 311 TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPALHVWQNSWGL-STRTIGIMVMV 369

Query: 332 SHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++ +        A         + + A L   G  V  D  
Sbjct: 370 HGDDRGLVIPPRVADIQTVIVPVGTGAKTTDAEKASLMAEIDALAAVLEAAGVRVEVDKR 429

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               G +F   +L G PL++  G    +   V    R 
Sbjct: 430 DYTPGWKFNDWELHGVPLRLEFGPGESAGHYVTASRRD 467



 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     +   + G    S P   S D L 
Sbjct: 108 QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQNWFNDRIKKMGVKNCSFPLFVSEDVLK 167

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 168 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 227

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +R+REFL ++ ++  LT  G++    ++   Y  ++  L
Sbjct: 228 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEGGAREEVLQILEHYAHVYEEL 279


>gi|301633230|gb|ADK86784.1| proline--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 483

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 142/449 (31%), Gaps = 93/449 (20%)

Query: 24  KLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNA-------------------IIREEQNR 63
           +L+ +  ++     KG   +LP        +                      I  E   
Sbjct: 14  QLLSKAQLVSYGDVKGTNCFLPNSWNLWLQIQRLYNNATALIKLKDKVILKQFIPIEPLP 73

Query: 64  TGAIEMSVPTLQ-SADLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIF 118
               ++ +PTL   ++   E    + +  E+  +      +    ++  PT E    +++
Sbjct: 74  YTVEQVQLPTLSFYSEYQKEKRHVEGFNPELFLIEQIGTKKLHDPLVLRPTSEIAFCNLW 133

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +    SY+NLP  + Q    FR E         +R FL    + +  T            
Sbjct: 134 KKQSFSYQNLPVIYNQWTCVFRAEKN-------TRPFLRNSEFYWQETH----------- 175

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                     GL S  + +ES  I                   F                
Sbjct: 176 ----------GLFSDGVNSESAAI------------------AFWKLYQDIIVNQLCIPA 207

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F  + S N         +   S                   + ++       G  ++ P 
Sbjct: 208 FVGLKSPNERFAGAQNTWTVESI--------------MPDGQALQCATSHDLGQTFTKPF 253

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL-INIKAH 357
             TF+    +       S GI + R++ A++ +  D  G+I P  VAP ++ L +  K  
Sbjct: 254 GLTFQNQANQQAIPYSFSCGI-STRILGALLLTHSDDFGLILPWKVAPIQVKLYLFDKKG 312

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKV 416
           D    +  +K+   L ++     +  +  Q+G Q    ++ G P Q+IV      +   V
Sbjct: 313 DTKTVELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIPFQLIV-----DNPQTV 367

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I +RLT ++   S E++ +         
Sbjct: 368 NIFNRLTRVKTAYSFEQLASRFVELVQQY 396


>gi|32307624|gb|AAP79217.1| threonyl-tRNA synthetase [Bigelowiella natans]
          Length = 147

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 62/151 (41%), Gaps = 7/151 (4%)

Query: 299 SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DGK +  + +     G++     ++  +  G   +W   ++P ++ ++ +   
Sbjct: 1   DLEYVSKDGKKERPIMVHRAIFGSIERFFGILVENTAGDFPVW---LSPVQLKVLPVTDD 57

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R  CE +  +   +G     D   +++G     A+L   P+  +VG K +  +++ 
Sbjct: 58  ---FRPFCEDVVKKAKALGIRAEIDSSDDRLGKMIRNAELEKIPVVAVVGQKEIDSNQLA 114

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           I+ R  G     ++E++I   S      + +
Sbjct: 115 IRTRKGGDLGSFAVEDLIEKLSDAIKVGKEL 145


>gi|194246927|emb|CAQ76828.1| prolyl-tRNA synthetase [Campylobacter concisus]
          Length = 221

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 70/162 (43%), Gaps = 5/162 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWT---APYAATSDVHNEKLFDSLPENKRVSA-- 279
           K ++D  +   N         +      +          D+   K  D  P         
Sbjct: 60  KFYIDNELKGANNMICGANEKDYHFVGVSVSGFNEERFKDLVKVKEGDKCPVCGGNLKLS 119

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+AT+   +GK     MG YGIG  R++A +IE+SHD KG I
Sbjct: 120 KGIEVGHIFQLGDKYSAAMNATYLDENGKAKPFLMGCYGIGISRLIAVMIEASHDEKGCI 179

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           W    APF + +I     D+       ++Y  L K G  +  
Sbjct: 180 WKKECAPFDVEIIISNLKDEAGVKFAFELYESLKKAGVSIII 221


>gi|13508141|ref|NP_110090.1| prolyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2501039|sp|P75382|SYP_MYCPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1674123|gb|AAB96084.1| putative prolyl-tRNA synthetase [Mycoplasma pneumoniae M129]
          Length = 483

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 142/449 (31%), Gaps = 93/449 (20%)

Query: 24  KLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNA-------------------IIREEQNR 63
           +L+ +  ++     KG   +LP        +                      I  E   
Sbjct: 14  QLLSKAQLVSYGDVKGTNCFLPNSWNLWLQIQRLYNNATALIKLKDKVILKQFIPIEPLP 73

Query: 64  TGAIEMSVPTLQ-SADLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIF 118
               ++ +PTL   ++   E    + +  E+  +      +    ++  PT E    +++
Sbjct: 74  YTVEQVQLPTLSFYSEYQKEKRHVEGFNPELFLIEQIGTKKLHDPLVLRPTSEIAFCNLW 133

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +    SY+NLP  + Q    FR E         +R FL    + +  T            
Sbjct: 134 KKQSFSYQNLPVIYNQWTCVFRAEKN-------TRPFLRNSEFYWQETH----------- 175

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                     GL S  + +ES  I                   F                
Sbjct: 176 ----------GLFSDGVNSESAAI------------------AFWKLYQDIIVNQLCIPA 207

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           F  + S N         +   S                   + ++       G  ++ P 
Sbjct: 208 FVGLKSPNERFAGAQNTWTVESI--------------MPDGQALQCATSHDLGQTFTKPF 253

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL-INIKAH 357
             TF+    +       S GI + R++ A++ +  D  G++ P  VAP ++ L +  K  
Sbjct: 254 GLTFQNQANQQAIPYSFSCGI-STRILGALLLTHSDDFGLVLPWKVAPIQVKLYLFDKKG 312

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKV 416
           D    +  +K+   L ++     +  +  Q+G Q    ++ G P Q+IV      +   V
Sbjct: 313 DTKTVELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIPFQLIV-----DNPQTV 367

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I +RLT ++   S E++ +         
Sbjct: 368 NIFNRLTRVKTAYSFEQLASRFVELVQQY 396


>gi|258573385|ref|XP_002540874.1| prolyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237901140|gb|EEP75541.1| prolyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 586

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 18/189 (9%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S   + T +    K        YV   S+G+ + R +  ++  
Sbjct: 264 TGRGIQGGTSHGLGQNFSKMFNITVEDPTSKPDEKKPPLYVWQNSWGL-STRTLGVMVMV 322

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++ +    +   D         E + + L   G     D  
Sbjct: 323 HSDNRGLVLPPRVADIQTVIVPVGLTAKTPDDVRSSINAEIEHLRSVLEAAGVRAEVDKR 382

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEVINYASH 440
            G   G +F   +L G PL++  G    +   V    R       +  + + E+      
Sbjct: 383 EGYSPGWKFNDWELKGIPLRLEFGPGESAGGFVTTSRRDIPGKEGKSSIPISELATAVPA 442

Query: 441 RFSNNRPVL 449
                +  L
Sbjct: 443 LLETIQADL 451



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 5/154 (3%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD 98
           +   P      + + A   ++  + G    S P   S D L  E    + +  E+  +  
Sbjct: 79  WYQQPHSFFIWEEIQAWFNDKIKKMGVKNCSFPLFVSEDVLKKEKDHIEGFAAEVAWVTH 138

Query: 99  RN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                 +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+RE
Sbjct: 139 AGNNQLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTRE 198

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           FL ++ ++  LT   ++    ++   Y  ++ +L
Sbjct: 199 FLWQEGHTAHLTEAAAREEVLQILQHYAHVYEQL 232


>gi|71002510|ref|XP_755936.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66853574|gb|EAL93898.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159129993|gb|EDP55107.1| prolyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 637

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 18/183 (9%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------YVQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S     T +    K        +V   S+G+ + R +  ++  
Sbjct: 319 TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPPLHVWQNSWGL-STRTLGVMVMI 377

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++ +    +   +  EK+YA        L   G     D  
Sbjct: 378 HSDNRGLVLPPRVAETQTIIVPVGITAKTSDEEREKLYAEIDSLVSLLKAAGIRADSDKR 437

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYASH 440
            G   G +F   +L G PL++  G        V    R       +  + ++E+      
Sbjct: 438 EGYSPGWKFNDWELRGVPLRIEFGPGESVGRYVTAARRDIPGKDGKSTIPIDELSTAVPA 497

Query: 441 RFS 443
              
Sbjct: 498 LLE 500



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 5/150 (3%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRN-- 100
           P      + +      E  + G    S P   S D L  E    + +  E+  +      
Sbjct: 138 PASYFIWEEIQNWFNAEIKKVGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAWVTHAGNT 197

Query: 101 --DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL +
Sbjct: 198 PLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQ 257

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           + ++  LT E ++     M   Y RI+  L
Sbjct: 258 EGHTAHLTEEAAREEVLHMLNLYARIYEEL 287


>gi|296804108|ref|XP_002842906.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238845508|gb|EEQ35170.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 600

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 18/174 (10%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGA----DGKDHY--VQMGSYGIGAMRVVAAVIES 331
           + RGI+ G     G  +S     T +      D K     V   S+G+ + R +  ++  
Sbjct: 304 TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPPLHVWQNSWGL-STRTIGVMVMI 362

Query: 332 SHDGKGIIWPDSVAPFKISLINI----KAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++ +    K  D+         E I   LS  G  V  D  
Sbjct: 363 HGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERASIMAEIEAIATVLSAAGVRVEVDKR 422

Query: 385 G-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE---DMSLEEV 434
                G +F   +L G PL++  G    + S V    R    +E    + ++E+
Sbjct: 423 DGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRDIAGKEGKSSIPIKEL 476



 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +       + G    S P   S D L 
Sbjct: 101 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDANIKKMGVKNCSFPLFVSEDVLK 160

Query: 81  VESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        +K +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 161 KEKDHIEGFAAEVAWVTHAGNSPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 220

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L
Sbjct: 221 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTKEEAHEEVLQILQHYAHVYEQL 272


>gi|68475164|ref|XP_718300.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|68475357|ref|XP_718201.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46439958|gb|EAK99269.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46440061|gb|EAK99371.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
          Length = 411

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGAMR 323
                E K  ++  IEVGH FY G KYS P++            +   + MG YGIG  R
Sbjct: 191 CGHCEEGKLSASSAIEVGHTFYLGDKYSKPLNLEVDVPTSNNSIEKQRIMMGCYGIGISR 250

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-----------VCRDACEKIYARL 372
           ++AA+ E + D KG+ WP S+AP++++++ +    Q             +D  ++IY  L
Sbjct: 251 IIAAIAEINRDEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYNIL 310

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++   D   D+  + +G +   +DLLG PL +I+G
Sbjct: 311 NQANIDYRLDNRSDSMGKKLKQSDLLGIPLSIILG 345



 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           YSFDL    +  +Y K+  +Y +IF  LG+  +   A+SG IGG LSHE+  L  +GE  
Sbjct: 3   YSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEADSGDIGGSLSHEWHYLNSSGEDT 62

Query: 221 VFCSKDFM 228
           VF   +  
Sbjct: 63  VFECNECH 70


>gi|157361671|gb|ABV44793.1| glutamyl-prolyl-tRNA synthetase [Crassostrea ariakensis]
          Length = 153

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S       +  +  +  YV   S+G+   R +  +     D K
Sbjct: 14  SGRAIQGATSHHLGQNFSKMFEICIQDQETLEKQYVYQNSWGLT-TRTIGVMCMIHGDNK 72

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P +VA  ++ ++         K  +Q   D CE +   L  +      D       
Sbjct: 73  GLVLPPNVASVQVIIVPCGITASLSKKDEQELMDKCEALKKELLALDIRARTDLRDNYSP 132

Query: 389 GSQFAVADLLGFPLQVIVGSK 409
           G +F   +L G P++V +G +
Sbjct: 133 GWKFNHWELKGVPIRVELGPR 153


>gi|207723063|ref|YP_002253475.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206588254|emb|CAQ18812.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 344

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF
Sbjct: 287 AGYSEVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIF 340


>gi|68062839|ref|XP_673428.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491269|emb|CAI02288.1| hypothetical protein PB300647.00.0 [Plasmodium berghei]
          Length = 245

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACE 366
            +V   S+G    R +  +I    D KG+I P +VA +K  ++ I    + +    + C+
Sbjct: 1   QFVHQTSWGCT-TRSIGVMIMIHSDNKGLILPPNVAKYKAVIVPILYKNSDETAIFNYCK 59

Query: 367 KIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            I   L     +  +DD      G +F   +L G P+++ VG K + ++      R    
Sbjct: 60  DIEKVLKNAQINCIFDDRDLYSPGYKFNHWELRGIPIRIEVGPKDIQNNSCVFVRRDNNQ 119

Query: 426 REDMSLEEVI 435
           + ++  E V+
Sbjct: 120 KFNIKKESVL 129


>gi|46205115|ref|ZP_00049003.2| COG0442: Prolyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 260

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGIE+GHIF  G KY+  +  T    +GK   V MGSYGIG  RV+AA+ E++HD  G+ 
Sbjct: 151 RGIEIGHIFALGRKYAQALGLTVLDENGKQVVVTMGSYGIGVTRVLAALAEANHDDAGLA 210

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           WP  VAP ++ ++     D    +  E++   LS  G +V +DD  + 
Sbjct: 211 WPAHVAPAQVHVVA-TGKDASVFEEAERLATELSGRGVEVIYDDRSKS 257


>gi|167957340|ref|ZP_02544414.1| glycyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 473

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 125/341 (36%), Gaps = 63/341 (18%)

Query: 105 IYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++ + S Y NLPF   Q    FR+E+ PR  V RSREF   +   F
Sbjct: 186 YLRPETAQGIFTNFKNVVDSFYPNLPFGIAQQGKAFRNEIAPRDFVFRSREFEQMEIEYF 245

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
            + PE  + +++++  S       LGLK   +            HE  V A   E +   
Sbjct: 246 -VDPEHWQEAFDELLASTHAFLAELGLKPEHI------------HELDVPA---EDRAHY 289

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           SK  +D                                   E +  +   +  +      
Sbjct: 290 SKKTIDI-------------------------EYDYPIGCEELMGIAYRTDFDLMNIQRA 324

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------ 337
            G            M  T KG + K     +     G  R + AV+  ++          
Sbjct: 325 SG----------KSMEYTVKGTNTKFVP-HVIEPSFGVERALMAVLSGAYREDEQNGEKR 373

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAV 394
             +  P+ +AP K ++  +  +     +   ++YA+L+K     V WDD    IG ++  
Sbjct: 374 VYLALPEHLAPVKFAVSPLLKNKPELVEKAREVYAQLAKANPGRVMWDD-NGNIGKRYRR 432

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D +G P  V+V  + + D  V ++ R T  +  + +EE++
Sbjct: 433 QDEIGTPHCVVVDFQTLEDGTVTVRERDTTEQRRVKVEELL 473


>gi|317138097|ref|XP_001816665.2| prolyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 558

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 150/438 (34%), Gaps = 88/438 (20%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           +++  MI   S  G +   P+     + V + + +          SVP L          
Sbjct: 29  VVKGEMIDHCSLPGYFILKPVAYGMWEKVRSWLADHLQPLELQSFSVPILP--------- 79

Query: 85  RYDSYGKEMLRLADRNDKAMIYG-----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                      L DR             P  E V+    R  IKS+R+LP    Q  ++F
Sbjct: 80  ----------YLGDRAQAPYAVSGSSSFPNAESVIYPYCRKWIKSHRDLPLRMNQWCIRF 129

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           + E  P+  ++RS E+L+++ +S  +T + ++    ++   Y  ++    L +IP+    
Sbjct: 130 QHEQNPQ-PLLRSCEYLLQEVHSAHITKDSARQEAAQILELYSLLYRD--LLAIPV---- 182

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             + G  +  ++   D        S   +   IP+ N   +             A     
Sbjct: 183 --VKGYKNAAYLQDTDI-------STGVVIAYIPATNQCIEGAKCHEFGQTLSKAYEITV 233

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            D        +L    +   R      I   G      M AT     G            
Sbjct: 234 RDPSATAEPAALLHVWQNCWRI----SIRALG-----VMVATHSDNHG------------ 272

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDA-CEKIYARLSKV 375
                             ++ P  +A  +++++        +Q+  D   +++ +RLS  
Sbjct: 273 ------------------LVLPPRIAETQVAIVAAQASSTDEQLILDTETDRLVSRLSSA 314

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---REDMSL 431
           G  V  DD  G  +G +F    + G PL +++G   V++  V I+ R       + + ++
Sbjct: 315 GIRVKVDDLEGYSLGWRFNEWIVSGTPLFIVLGPNEVTNQVVTIRRRDLLHAEGKVEAAI 374

Query: 432 EEVINYASHRFSNNRPVL 449
            E+        +N +  L
Sbjct: 375 PELHTIIPTTLANIQEEL 392


>gi|83764519|dbj|BAE54663.1| unnamed protein product [Aspergillus oryzae]
          Length = 512

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 150/438 (34%), Gaps = 88/438 (20%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           +++  MI   S  G +   P+     + V + + +          SVP L          
Sbjct: 47  VVKGEMIDHCSLPGYFILKPVAYGMWEKVRSWLADHLQPLELQSFSVPILP--------- 97

Query: 85  RYDSYGKEMLRLADRNDKAMIYG-----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                      L DR             P  E V+    R  IKS+R+LP    Q  ++F
Sbjct: 98  ----------YLGDRAQAPYAVSGSSSFPNAESVIYPYCRKWIKSHRDLPLRMNQWCIRF 147

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           + E  P+  ++RS E+L+++ +S  +T + ++    ++   Y  ++    L +IP+    
Sbjct: 148 QHEQNPQ-PLLRSCEYLLQEVHSAHITKDSARQEAAQILELYSLLYRD--LLAIPV---- 200

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             + G  +  ++   D        S   +   IP+ N   +             A     
Sbjct: 201 --VKGYKNAAYLQDTDI-------STGVVIAYIPATNQCIEGAKCHEFGQTLSKAYEITV 251

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            D        +L    +   R      I   G      M AT     G            
Sbjct: 252 RDPSATAEPAALLHVWQNCWRI----SIRALG-----VMVATHSDNHG------------ 290

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDA-CEKIYARLSKV 375
                             ++ P  +A  +++++        +Q+  D   +++ +RLS  
Sbjct: 291 ------------------LVLPPRIAETQVAIVAAQASSTDEQLILDTETDRLVSRLSSA 332

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---REDMSL 431
           G  V  DD  G  +G +F    + G PL +++G   V++  V I+ R       + + ++
Sbjct: 333 GIRVKVDDLEGYSLGWRFNEWIVSGTPLFIVLGPNEVTNQVVTIRRRDLLHAEGKVEAAI 392

Query: 432 EEVINYASHRFSNNRPVL 449
            E+        +N +  L
Sbjct: 393 PELHTIIPTTLANIQEEL 410


>gi|262118515|pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
           Thrrs-1 From Aeropyrum Pernix (Selenomethionine
           Derivative)
          Length = 471

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 117/364 (32%), Gaps = 47/364 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G+  +   G      +  ++ +   R G   +  P + S +L+  SG  + Y      
Sbjct: 38  GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYR-NNXY 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN---LPFTFYQIQLKFRDELRPR-FGVMR 151
           L D         P +      +F + +  +R+   LPF  ++     R E     +G++R
Sbjct: 97  LFDIEGHEFAVKPXNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR 156

Query: 152 SREFLMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRA---ESGPIG 203
            R F   DA+         +     + +  +   R+F  LG+  ++  +R    +   IG
Sbjct: 157 VRGFTQDDAHIIVPGGRVIDVVYDVFEEXKLVLERLFK-LGVSSETFKVRLSXSDKSLIG 215

Query: 204 GDL--SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            +   S E    A+    +                     I     I        AA   
Sbjct: 216 KEFXGSKEEWEGAEEALREAASR-----------------INEKYGIDIVELEGEAAFYG 258

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              + +       +   ++  + G I   F    ++ L      +   G +    +    
Sbjct: 259 PKLDFIXXV---EESGVSKEWQXGTIQFDFNLPRRFRL--YDVVREEFGIEEVYIIHRAL 313

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKV 375
           +G++     V      G+    P ++AP + ++I +K     D+   D    I   L   
Sbjct: 314 LGSIERFLGVYLEHRRGRX---PFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDK 370

Query: 376 GCDV 379
           G  V
Sbjct: 371 GFRV 374


>gi|289803037|ref|ZP_06533666.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 105

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 341 PDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           PD++APF+++++ +  H     ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G
Sbjct: 1   PDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIG 60

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  +++G + + +  +E K+R +G +  +   ++++Y      
Sbjct: 61  IPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIVDYLVKAIK 104


>gi|15791150|ref|NP_280974.1| glycyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169236906|ref|YP_001690106.1| glycyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|10581762|gb|AAG20454.1| glycine-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|167727972|emb|CAP14760.1| glycine--tRNA ligase [Halobacterium salinarum R1]
          Length = 576

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 90/560 (16%), Positives = 164/560 (29%), Gaps = 148/560 (26%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQS 76
           +L  R G   Q       + G Y++ P G     N+    R+      G +E+  PT+  
Sbjct: 7   ELARRRGFFFQASEAYGGAAGFYTYGPEGAALKRNIEDAWRDRFVTREGNMEIDSPTVTP 66

Query: 77  ADLWVESG-------------------RYDSYGKEMLRLADRN----DKAMIYGPTHEE- 112
             ++  SG                   R D   ++   + D      D+       HE  
Sbjct: 67  EPVFQASGHLDDFDDMLVECPDCGESHRADHVIEDNTDVEDAESMPTDEVEALIADHELV 126

Query: 113 -----------------------------------------VMTDIFRSHIKSYRNLPFT 131
                                                    + T+  R    +   LPF 
Sbjct: 127 CPACGGPLAGQSVTGFNLMFDTTIGPGDGDPGYLRPETAQGMFTEFPRLKEYARNQLPFG 186

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-----H 186
             Q+   +R+E+ PR  ++R+REF M +   F + P G   + +++    L ++      
Sbjct: 187 VAQVGTGYRNEISPRNALLRTREFTMAELEFF-VDPAGDGPALDRVADVELPLYPVDAQQ 245

Query: 187 RLGLKSIPM----RAESGPIGGDLSHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFD 240
             G + + +        G +GG+    F+  +     +V     +      +P E   + 
Sbjct: 246 AAGEEYLRLTPQEALAEGVVGGEWVAYFLARSKQWFERVGVDMDRFRFRQHLPGELAHYA 305

Query: 241 DIISLNSIVEQWTAPY--------AATSDVHNEKLFDSLPENK---------------RV 277
                                         H+E   DS    +                +
Sbjct: 306 SDCWDAEGEVDGDWVELEGVASRTDYDLSKHDEHADDSFTVFQAYDEPKTVERASVDPEM 365

Query: 278 SARGIEVG--------------------------HIFYFGTKYSLP-----MSATFKGAD 306
           S  G E G                           +   G  Y++P          +   
Sbjct: 366 SYLGPEFGGAAGDVADALAALAARDRAAFDGDEVTVDVDGEAYTVPTERTGFEVAEETES 425

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHD 358
           G+     +     G  R V   +  S++           +  P  VAP  + +  +   D
Sbjct: 426 GRHIIPHVVEPAFGIGRAVYTALAHSYEADEVDGEPRDVLRLPAEVAPTTVGVFPLMDKD 485

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   +I A L   G  V +DD G  IG ++   D +G P  V V  + + +  V +
Sbjct: 486 -GLGERAREIAAELRAAGLAVTYDDSGN-IGRRYRRQDEVGTPYCVTVDYEALEEGAVTL 543

Query: 419 KHRLTGIREDMSLEEVINYA 438
           + R T  +  + + EV    
Sbjct: 544 RDRDTTTQVRVPIAEVAETL 563


>gi|309808038|ref|ZP_07701957.1| putative threonine--tRNA ligase [Lactobacillus iners LactinV
           01V1-a]
 gi|308168721|gb|EFO70820.1| putative threonine--tRNA ligase [Lactobacillus iners LactinV
           01V1-a]
          Length = 377

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 5/129 (3%)

Query: 17  DAEIASHKLMLR-TGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           D +   H+ + R   +     +   G+  W+P G      +   I +++   G   +  P
Sbjct: 234 DIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTP 293

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFT 131
            L + D +  SG +  Y ++M    D  D  M+   P +      I+  HI+SYR LP  
Sbjct: 294 VLMNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIR 353

Query: 132 FYQIQLKFR 140
             ++ +  R
Sbjct: 354 IAELGMMHR 362


>gi|316961125|gb|EFV48184.1| proline--tRNA ligase [Trichinella spiralis]
          Length = 333

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 106/356 (29%), Gaps = 64/356 (17%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           +++ +  MI  +   G Y   P      + + A +  +           P   S A L  
Sbjct: 30  QVITKAEMIEYYDISGCYIIRPWAFAIWEAIQAWLDRQIKLMDVANCYFPMFVSQAALER 89

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +         + +   PT E VM   F   I+S+R+LP    Q   
Sbjct: 90  EKSHVKGFSPEVAWVTKSGQSEMSEPVAIRPTSETVMYSSFSKWIQSHRDLPLKINQWCN 149

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +RSREFL ++ ++     + +    + +   Y R++    L ++P+  
Sbjct: 150 IVRWEFKHPTPFLRSREFLWQEGHTAHANKDDAVKEVHDILDLYARVYEE--LLAVPVIK 207

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                G     E    AD   T        ++  IP+         S +           
Sbjct: 208 -----GRKTDKEKFAGADFTTT--------IEAYIPTSGRGIQAATSHHLGQNFSKMFDI 254

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                  +K  +                                              S+
Sbjct: 255 VYEHPETQKKENVY------------------------------------------QNSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           G+   R +        D +G++ P +VA  ++ +I       + +   + I     
Sbjct: 273 GLT-TRSIGVFTMIHSDNQGLVLPPAVAKVQVVIIPCGITSSLDKSVVKNIQDTCQ 327


>gi|58197411|dbj|BAD88636.1| hypothetical protein [Streptococcus suis]
          Length = 119

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +APF + LI +   D+   +  + I A L   G +V  DD  E++G +F+ +DL+G 
Sbjct: 15  PKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRNERVGVKFSDSDLIGL 74

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           P++V VG K  +D  VE+K + TG   ++ +++++    
Sbjct: 75  PIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLLETLQ 112


>gi|77554944|gb|ABA97740.1| Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 489

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + RG++       G  ++     TF+   G    V   S+     R +  ++ +  D K
Sbjct: 244 NTGRGVQGATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWA-YTTRSIGVMVMTHGDDK 302

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
                                     + C+K    L K G     D       G +++  
Sbjct: 303 ------------------DVDTTAIVNECKKTVETLEKAGIRADLDTRENYSPGWKYSHW 344

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++ G PL++ +G K +++++  +  R  G + D+   +++   +      +  L
Sbjct: 345 EMKGVPLRIEIGPKDMANNQARVVRRDNGAKADIPTADLVEKVNGLLDEVQKNL 398



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++ + MI  +   G Y   P   +  + +      E  +        P  +    L  
Sbjct: 43  EVVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQK 102

Query: 82  ESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        +  +   PT E VM   F   I+S+R+LP    Q   
Sbjct: 103 EKDHIEGFAPEVAWVTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCN 162

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R E       +RSREFL ++ ++   T E +     ++   Y RI+   
Sbjct: 163 VVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADEEVLQILELYRRIYEEF 213


>gi|213024164|ref|ZP_03338611.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 244

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  +
Sbjct: 115 DGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEAL 174

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A+ +G DG++  + MG YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H 
Sbjct: 175 KASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHK 234

Query: 359 Q-VCRDACEK 367
               ++  EK
Sbjct: 235 SFRVQELAEK 244


>gi|76664827|emb|CAJ17850.1| threonyl-tRNA synthetase [Candidatus Phytoplasma solani]
          Length = 302

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 4/148 (2%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD +  + +L L      +   G+   LP G      V   I +++     
Sbjct: 156 LQLLEERKQRDHKRLNKELDLFM-FSKEVGLGLPFLLPKGATLRRIVERYIVDKELSYEY 214

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             +  P + + +L+  SG  + Y + M  +    + + ++  P +      I++   +SY
Sbjct: 215 HHVYTPIMTNTELYRISGHLEHYAENMFPVMRLESGEQLVLRPMNCPHHMIIYKKTPRSY 274

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           + LPF   ++ +  R E      G+ R 
Sbjct: 275 KELPFRIAELGMMHRFEKSGAVSGLQRV 302


>gi|321309527|ref|YP_004191856.1| prolyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319801371|emb|CBY92017.1| prolyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 467

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 122/412 (29%), Gaps = 65/412 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
           KG       G    + +   I  +  + G   +S PT    A++  E  R   +  E+  
Sbjct: 28  KGTLFIGHRGWNIWEKIRDFIDAKYKQKGIKNVSFPTFIPVAEIEREKSRLSGFNPEIYL 87

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           ++   D+                                         R  F +  + E 
Sbjct: 88  VSRSGDEE----------------------------------------RQNFFLRPTSEI 107

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L   ++ F    E        +F  +  +F          RAE        + EF     
Sbjct: 108 LF--SHYFRNILES-YEDLPLLFNQWCNVF----------RAEKNTKAFLRTCEFHWQ-- 152

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E                   +    +  + +   +       ++           E  
Sbjct: 153 --EAHTLHLSKEEAMEYLKFFHETYKSLVKDLLNIAFLEGEKTVNERFPGSEKTLTLEAI 210

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + +++    Y    ++      +   +    Y    S G  + R++ A+I S  D 
Sbjct: 211 MPDGQALQIATSHYLSKNFTETFDVKYTSRENVVSYPHQLSAGC-STRLIGALIMSHGDD 269

Query: 336 KGIIWPDSVAPFKISL--INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G++ P S+  F + +  + I        +  +K    L   G  V WD      G +  
Sbjct: 270 SGLVLPLSM--FDVHIKFLIINGAVTEGSELHKKFSDELK--GYKVEWDFSSRSFGYKIK 325

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +++G P+ VI+G   +  +   +K RL+  +  + ++++I+         
Sbjct: 326 NEEMIGTPVSVILGPSEIKSNWALVKTRLSESKVSIPMDQLISKIKETIDQY 377


>gi|115400861|ref|XP_001216019.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114191685|gb|EAU33385.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 514

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 134/425 (31%), Gaps = 89/425 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G Y   P      + + A ++++  R G  + + P L S ++   SG  D+    M   
Sbjct: 44  PGFYILKPASYAIWERICASLKDKLKRMGVQDCAFP-LSSLEITGTSG--DNGDPCM--- 97

Query: 97  ADRNDKAMIYGP--THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               D              +       I +  +LP    Q +  FR E  P+   +R RE
Sbjct: 98  ----DTEPRLRNRQNATSTIYSCCARWIANPGDLPLRLNQWKTAFRSEPCPQ-PFLRCRE 152

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            L+++A++  +T      ++ +M                                     
Sbjct: 153 LLIQEAHTAHMTQ---YEAHEEMLQVL--------------------------------- 176

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                 ++ +       +P       D  S + +              H   LF  +P  
Sbjct: 177 -----DIYTAVYEELLAVPLIRGLQSDPNSSDEV--------------HTAVLFGLVPAL 217

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGA-------DGKDHYVQMGSYGIGAMRVVAA 327
           ++     I+ G     G + S   + T                +V   S+ + ++R +  
Sbjct: 218 EQC----IQAGACHELGQQMSKEYNITTSDVPVGSQTVSNSTVHVWQNSWNL-SIRAIGL 272

Query: 328 VIESSHDGKGIIWPDSVAPFKISLIN-----IKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++ +  D +G++ P  +A  ++ +I       K      R     I +  + +G  V  D
Sbjct: 273 MVATHGDNRGLVLPPHIAETQVVIIPHQDSRNKNDHHKIRAEILSIQSTFASLGVRVSAD 332

Query: 383 DMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYA 438
               +  G +       G P++++ GS+ ++   V +  R          + L ++    
Sbjct: 333 LRDWRSTGWKMKEWITRGAPIRLVFGSEELAGRYVTVCQRDLPKPNEEITIPLSQLPTAI 392

Query: 439 SHRFS 443
               +
Sbjct: 393 PTLLA 397


>gi|33322959|gb|AAQ07216.1|AF496524_1 prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis]
          Length = 96

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V MGSYGIG  R+++AV+E      G+ WP  +APF I +I +K  D++     E + 
Sbjct: 1   QPVIMGSYGIGVTRLLSAVVEQHAXENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLE 60

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           A+ +K   DV +DD  E+ G +F  ADL+G P+++ VG
Sbjct: 61  AKFAK--YDVLYDDRNERPGVKFNDADLVGAPIRITVG 96


>gi|325958418|ref|YP_004289884.1| glycyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325329850|gb|ADZ08912.1| glycyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 575

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/549 (14%), Positives = 168/549 (30%), Gaps = 144/549 (26%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESG------ 84
           I+  S G + + PLG    +N+ +  R+      G  E+  PT+   +    SG      
Sbjct: 22  IYSGSAGFFDYGPLGATLKNNIISKWRKYYIVGEGFYEIESPTIMPEEALKASGHVDHFT 81

Query: 85  -------------RYDSYGKE--------------------------------------- 92
                        R D   ++                                       
Sbjct: 82  DPMTECKDCLEVFRADHVIEDVIDDDVEGLENQRLTEIISENQIGCPKCGGHLTHVWSYN 141

Query: 93  -MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFG 148
            M +     +        P   + +   F+  ++ +R  LPF   QI   +R+E+ PR G
Sbjct: 142 LMFQTMIGAKGKATGYMRPETAQGIFIPFKRLLRFFRGKLPFGVVQIGKAYRNEISPRQG 201

Query: 149 VMRSREFLMKDAYSFD----------------------------------LTPEGSKHS- 173
           ++R REF   +A  F                                   +T + +  + 
Sbjct: 202 IIRLREFTQAEAEIFVDPVDKDHPKFGNVANDKLKLLSSDAQLNKEDPKIVTAKSAVETG 261

Query: 174 -YNKMFVSYL-----RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +   ++Y      R    LG+  I +      +  +++H  I   D    +V   +  
Sbjct: 262 LVSSEVLTYQLCIAGRFLADLGIP-IDVIRFRQHLPTEMAHYAIDCWDV---EVLTDRFG 317

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR------- 280
               I   +    D+ S      +  + +    +          P+ K+           
Sbjct: 318 WIEIIGIADRTDFDLKSHAKYSNEDLSVFIEYDEPKKINKLVVKPDMKKFGPLFKADAPK 377

Query: 281 ---------GIEVGHIFYFGTKYS--------------LPMSATFKGADGKDHYVQMGSY 317
                      EV  +F  G  Y+              +  +   +   G+     +   
Sbjct: 378 VIKALEDLDASEVQRVFDNGETYNIDLEDKTVEISSDVVSFNEQEEMVRGEKVVPHVIEP 437

Query: 318 GIGAMRVVAAVIESSHDGK----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             G  R++ +V+  S+        +     +AP  +++  +   D++  +   +I   L 
Sbjct: 438 SFGIDRIIYSVLLHSYTEDDEREFLKLEKQIAPIGVNVFPLVNKDKLA-EKAHEIREELR 496

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G    +D  G  IG ++A +D +G P  V V  + + ++ V I++R    +  + ++ 
Sbjct: 497 NQGIIAEYDGSG-TIGRRYARSDEIGVPFAVTVDHETLENNTVTIRNRDNLEQVRIPVQN 555

Query: 434 VINYASHRF 442
           V +      
Sbjct: 556 VYSVLIDLL 564


>gi|154274019|ref|XP_001537861.1| hypothetical protein HCAG_07283 [Ajellomyces capsulatus NAm1]
 gi|150415469|gb|EDN10822.1| hypothetical protein HCAG_07283 [Ajellomyces capsulatus NAm1]
          Length = 551

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     +   + G    S P   S D L 
Sbjct: 80  QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQNWFDDRIKKMGVKNCSFPLFVSEDVLK 139

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 140 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 199

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              R E +     +R+REFL ++ ++  LT  G++    ++   Y  ++  L
Sbjct: 200 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEGGAREEVLQILEHYAHVYEEL 251


>gi|213026905|ref|ZP_03341352.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 168

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 54/171 (31%), Gaps = 4/171 (2%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D+Y   M   +  N +     P +      IF   +KSYR+LP    +     R+E    
Sbjct: 1   DNYKDAMFTTSSEN-REYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGA 59

Query: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+MR R F   DA+ F    E   H  N        ++   G + I ++  + P    
Sbjct: 60  LHGLMRVRGFTQDDAHIFCT--EEQIHEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRI 117

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            S E    A+          +        E   +   I          A  
Sbjct: 118 GSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQ 168


>gi|125973847|ref|YP_001037757.1| histidyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256004300|ref|ZP_05429282.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281418008|ref|ZP_06249028.1| histidyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166227964|sp|A3DF35|SYH_CLOTH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125714072|gb|ABN52564.1| histidyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|255991734|gb|EEU01834.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409410|gb|EFB39668.1| histidyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316939956|gb|ADU73990.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 417

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 137/433 (31%), Gaps = 41/433 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ Q  KG    LP        +   I +  +  G  E+ +P  +  +L+        D 
Sbjct: 1   MLTQAPKGTKDILPSEVYKWHYIEKEIAKLCHDFGYKEIRIPVFEHTELFQRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P     +   +  +  +    P   Y     +R E      
Sbjct: 61  VQKEMYTFLDKGQRSITLRPEGTAGVVRSYIENGMASLPQPVKLYYNITAYRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----- 203
             R REF      +F             M   +   F RLG+K I +   S  IG     
Sbjct: 118 KGRYREFHQFGVEAFGAPGPSIDVEIISMVKLF---FDRLGIKEISLNINS--IGCPVCR 172

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            + + + +       +++  + +      P    D  +                   D  
Sbjct: 173 AEYNKKLMDYLRPNLSKLCATCNTRFERNPLRIIDCKEESCKKITANAPALVENLCDDCK 232

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGK------------- 308
           N                 I+   +      TK      +   GA G              
Sbjct: 233 NHFEGLKAGLENLGIDYKIDKNIVRGLDYYTKTVFEFVSDNIGAQGTVCGGGRYDGLVEA 292

Query: 309 --DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                     + +G  R++  +     + +GI +P+S  P  I +  I           E
Sbjct: 293 CGGKPTPGIGFAMGLERLLMVM-----ENQGIKFPESKKP-DIFIAAIGDK---ANSYAE 343

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L K G     D MG+ + +Q   AD LG    + +G   +   K  +K+  TG +
Sbjct: 344 KMVYELRKEGLSAEKDLMGKSLKAQMKYADKLGAKYSIALGDDEIESGKAVLKNMETGEQ 403

Query: 427 EDMSLEEVINYAS 439
           +++SL+ +I+   
Sbjct: 404 KEISLDTLISRLK 416


>gi|156030577|ref|XP_001584615.1| hypothetical protein SS1G_14384 [Sclerotinia sclerotiorum 1980]
 gi|154700775|gb|EDO00514.1| hypothetical protein SS1G_14384 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 362

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 25/202 (12%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS-- 278
           +   K         +  D       ++             ++      D  P+ +  +  
Sbjct: 161 IVKEKFSAVAKANGKTRDDWLSKVDDTSFISRDPSTGEALNLRRIMEGDICPKCQEPTLK 220

Query: 279 -ARGIEVGHIFYFGTKYSLPMSATF-----------------KGADGKDHYVQ-MGSYGI 319
             + IE+GH F+ GT+YS PM AT                   G +G+      MG +GI
Sbjct: 221 VEKAIELGHTFHLGTRYSKPMEATVTVPCNLVENKSEEITALLGENGQVQVSMEMGCHGI 280

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++ AV E+  DGKG+ WP  ++PF+I +I  K  D+       +I+   S    D 
Sbjct: 281 GVTRMIGAVAETLVDGKGLNWPRVMSPFEIVVIPGKGSDEG----ALQIFDIFSIAAMDP 336

Query: 380 FWDDMGEQIGSQFAVADLLGFP 401
             DD G  I  +   ADL+G+P
Sbjct: 337 VIDDRGVSIAWKLRDADLIGYP 358


>gi|41615203|ref|NP_963701.1| glycyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M]
 gi|40068927|gb|AAR39262.1| NEQ417 [Nanoarchaeum equitans Kin4-M]
          Length = 512

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 129/371 (34%), Gaps = 42/371 (11%)

Query: 87  DSYGKEML-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELR 144
           + Y K+++ R+    +      P   +    +F+     +R  LP     +   FR+E+ 
Sbjct: 162 EQYIKDIIERVKKMVENEAYLRPETAQGPYVMFKREFILHRQKLPLGLAVVGKAFRNEIS 221

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR  ++R REF   +   F   PE ++   N++    L    + G     ++ +  P   
Sbjct: 222 PRQLLLRLREFTQAELQIF-FDPEDNEFDINEVKDVELNFLDKEG-NYKRIKVKDLPFPE 279

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             ++    +    E      +      +  +   F +   ++  +   T  +     +H 
Sbjct: 280 FYAYFVGKVKQFYERLGIPEERLRFRELSEKEKAFYNKYHVDIEINFPTYGWKEVGGIHY 339

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
               D     K                         T +  D K     +     G  R 
Sbjct: 340 RTDHDLSGHMKVSGK-------------------DLTVQ-KDNKKFIPHVLELSFGVDRN 379

Query: 325 VAAVIESSHDGKG----------------IIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           V A+I+     +                 +  P  +AP K+++  +    ++  +  +++
Sbjct: 380 VLALIDLFLTEEEYEIERDNQKVKEKRVVLKIPKHLAPIKVAVFPLLKKPELI-EKAKEV 438

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      + +D+ G  IG ++   D +G P  + +  + + D+ V I+ R T  +  
Sbjct: 439 YNMLKNYFYPIIYDEQG-SIGRRYRRVDEIGVPYAITIDYQTLEDNTVTIRDRDTMKQVR 497

Query: 429 MSLEEVINYAS 439
           + +E++ N  +
Sbjct: 498 VKIEDLPNQLT 508


>gi|303238651|ref|ZP_07325184.1| histidyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593770|gb|EFL63485.1| histidyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 417

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 147/434 (33%), Gaps = 43/434 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  KG    LP        V   I E  +  G  E+ +P  +  +L+        D 
Sbjct: 1   MLIKAPKGTKDILPSEVYKWQYVEKKISELCSNFGYKEIRLPVFEHTELFQRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P     +   +  +  +   +P   Y     +R E      
Sbjct: 61  VQKEMYTFMDKGGRSITLRPEGTAGVVRSYIENGMASLAMPIKLYYNITAYRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----- 203
             R REF       F             M   +   F RLG+K   +      IG     
Sbjct: 118 KGRYREFHQFGVECFGSNGPLVDVEIISMLSMF---FERLGIKD--VELNINSIGCPKCR 172

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIP----SENTDFDDIISLNSIVEQWTAPYAAT 259
           G+ + + +        ++  +        P        +   I + ++           +
Sbjct: 173 GEYNKKLLEFFKPNLDKLCGTCKTRYERNPLRIIDCKEETCKIYTKDAPALVDNLCEDCS 232

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSAT--------FKG---A 305
                 K        K    + I  G  +Y  T +   S  + A         + G    
Sbjct: 233 KHFEGLKEGLENLGIKYNIDKNIVRGLDYYTKTVFEFVSKNIGAQGTVCGGGRYDGLIEE 292

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G +    +G + IG  R++  ++  S   +GI  P + A   + +  I    +  +   
Sbjct: 293 CGGNQTPGIG-FAIGIERLL--LVMES---QGIEIPKAEA-IDVYIACIG---EQAQKYA 342

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+  ++ + G     D MG  + +Q   AD LG    +++G   V  +K  +K+ LTG 
Sbjct: 343 QKLVYKIRQEGFSAETDLMGRSVKAQMKYADKLGAVYSLVLGDTEVESNKAVLKNMLTGE 402

Query: 426 REDMSLEEVINYAS 439
            +D+SL+ +I    
Sbjct: 403 TKDISLDTLIERLK 416


>gi|238504368|ref|XP_002383415.1| prolyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|220690886|gb|EED47235.1| prolyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 514

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 150/440 (34%), Gaps = 88/440 (20%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           +++++  MI      G +   P+     + V + + +          SVP L        
Sbjct: 27  QVVVKGEMIDHCCLPGYFILKPVAYGMWEKVRSWLADHLQPLELQSFSVPILP------- 79

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYG-----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                        L DR             P  E V+    R  IKS+R+LP    Q  +
Sbjct: 80  ------------YLGDRAQAPYAVSGSSSFPNAESVIYPYCRKWIKSHRDLPLRMNQWCI 127

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           +F+ E  P+  ++RS E+L+++ +S  +T + ++    ++   Y  ++    L +IP+  
Sbjct: 128 RFQHEQNPQ-PLLRSCEYLLQEVHSAHITKDSARQEAAQILELYSLLYRD--LLAIPV-- 182

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               + G  +  ++   D        S   +   IP+ N   +             A   
Sbjct: 183 ----VKGYKNAAYLQDTDI-------STGVVIAYIPATNQCIEGAKCHEFGQTLSKAYEI 231

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              D        +L    +   R      I   G      M AT     G          
Sbjct: 232 TVRDPSATAEPAALLHVWQNCWRI----SIRALG-----VMVATHSDNHG---------- 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDA-CEKIYARLS 373
                               ++ P  +A  +++++        +Q+  D   +++ +RLS
Sbjct: 273 --------------------LVLPPRIAETQVAIVAAQASSTDEQLILDTETDRLVSRLS 312

Query: 374 KVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---REDM 429
             G  V  DD  G  +G +F    + G PL +++G   V++  V I  R       + + 
Sbjct: 313 SAGIRVKVDDLEGYSLGWRFNEWIVSGTPLFIVLGPNEVTNQVVTIGRRDLLHAEGKVEA 372

Query: 430 SLEEVINYASHRFSNNRPVL 449
           ++ E+        +N +  L
Sbjct: 373 AIPELHTIIPTTLANIQEEL 392


>gi|226306422|ref|YP_002766382.1| histidyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|259511955|sp|C0ZZ58|SYH_RHOE4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226185539|dbj|BAH33643.1| histidyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 423

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 138/438 (31%), Gaps = 47/438 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KGI  ++P        V   +       G   + +P  +   L+        D   
Sbjct: 7   FSAPKGIPDYVPPQSAEFVAVRDGLTRAARLAGYGHIELPIFEDTGLFARGVGESTDVVS 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGDRSVTLRPEGTAGVMRAVIEHSLDRGQLPVKVSYAGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGIDDPALDAEVIAIADA---GFRSLGLDGFRLEITSLGDDTCRPQYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+      E     ++      +  +  D  ++ +   ++    +          
Sbjct: 181 ELLQEFLFALPLDEDTRRRAEINPLRVLDDKRPDVREMTAGAPLMLDHLSESCKAHFDEV 240

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     V+ R             E  H    G +  +     + G         
Sbjct: 241 LAHLDALGVPYVVNPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMEQLGGQP 299

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP---FKISLINIKAHDQVCRDACEKI 368
           +    +GIG  R V A+     + +G     SVAP     +  + + A     + A  KI
Sbjct: 300 LSGIGFGIGVDRTVLAL-----EAEG----KSVAPPARVDVFCVPMGA---EAKAALVKI 347

Query: 369 YARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             +L   G  V         G +     AD  G  + +++G + + +  V +K   TG +
Sbjct: 348 AHQLRANGIRVDLAYGNR--GVKGSMKAADRSGAAVALVLGERELEEGVVVVKQLATGEQ 405

Query: 427 EDMSLEEVINYASHRFSN 444
           E + L++V++       +
Sbjct: 406 ETVPLDQVVDKLGDLVEH 423


>gi|46446335|ref|YP_007700.1| putative threonine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399976|emb|CAF23425.1| putative threonine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 553

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 137/432 (31%), Gaps = 46/432 (10%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE-MSVP 72
             +D       L L +    + +     W P G   L  +   + +E ++ G  E ++ P
Sbjct: 147 KKKDHRQLGSDLNLFS-FPEKLTALECVWHPKGNLLLMLLKEWVTKEFSKIGKWEPVNTP 205

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++        +  +  + L   +   +  ++ P+       +F+   K   +LP  F
Sbjct: 206 YVVNS-------HFFKFNVDYLPTVEMGTEEYVFSPSPLIQHHYLFKRKKKDSSDLPIHF 258

Query: 133 YQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           ++   K+     P + G+  +  +    +  F    E     +        +I    G +
Sbjct: 259 FEWAKKYVLSTHPLKEGLFNAVGWSGDFSTIFSSD-EQLNQEFISSLQFIEQIIRIFGFE 317

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +      S         E    A     +   S   + +P+  E+ + D +      +  
Sbjct: 318 ARWCLVTSRQKSFKFRQE---KAAIDRIEKILSLCTLSYPLQDEHFESDCLEGPRLELRV 374

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                             +    +      + +  I Y     +       K  +     
Sbjct: 375 ------------------ADEIGREWVISALTLISIHYLKKDKTE------KQENEITIP 410

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +      ++  + A++    +G   +W   +AP ++ ++ +    +       +I  R
Sbjct: 411 FVIVRQIWESLDRLIALLIERFEGSFPLW---LAPEQVRILAVG---EGSLSYARQIETR 464

Query: 372 LSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDM 429
               G  V  D     ++G +  +A+    P  +I+G + +  + +  +     G  E +
Sbjct: 465 CRSQGLRVGVDFKKSTKLGEKIHLAEKEKVPYLLIIGEQEIKRNAITFRSVEKPGKSESI 524

Query: 430 SLEEVINYASHR 441
            LEE +     +
Sbjct: 525 RLEEFLEQIRQK 536


>gi|28211584|ref|NP_782528.1| histidyl-tRNA synthetase [Clostridium tetani E88]
 gi|32130099|sp|Q892X7|SYH_CLOTE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|28204025|gb|AAO36465.1| histidyl-tRNA synthetase [Clostridium tetani E88]
          Length = 439

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 145/439 (33%), Gaps = 47/439 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +   IR    + G I +  PT++ +++ +  G  ++  K++ R 
Sbjct: 12  PGFMELLPADQIVFNKMKDTIRHNYEKFGFIPLDTPTIEKSEILLAKGGGET-EKQIYRF 70

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                   +       V    + S   S  N PF  Y I   FR E R + G  R REF 
Sbjct: 71  --NKGNTDLSLRFDLTVPLARYVSQHFSDLNFPFRRYHISKVFRGE-RNQKG--RFREFY 125

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI------GGDLSHEF 210
             D            +      + Y   F  LG +   +R  +  +      G D+    
Sbjct: 126 QCDIDIIGNGSLSIINDAEIPSIIYQ-TFKELGFEDFTIRINNRKVLNGFFEGTDVEDRK 184

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            VL    + +                 D      +N I  + T      S    +   D 
Sbjct: 185 GVLRAIDKIEKIGEDGVRKELQELGLEDSKIDKIINFINIKGTKSEVIKSLKELDIENDV 244

Query: 271 L-------------------PENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------- 303
                               P+        I  G  +Y GT Y   ++   +        
Sbjct: 245 FKEGVYELEKVVHYIKSFNVPDKNYKIDLTIARGLDYYTGTVYETVLNNYPQIGSVCSGG 304

Query: 304 -GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF-KISLINIKAHDQVC 361
              +  +HY      G+G    +  +     + K II  ++ +   +  +I +       
Sbjct: 305 RYDNLAEHYTNQKLPGVGISIGLTRLFYQLREAK-IIGENASSTLSQALVIPVGD----T 359

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   K+  +L +            +IG +FA AD L  P  +++G   + + KV +K+ 
Sbjct: 360 MEYSIKVANKLRENEIISELYLEDAKIGKKFAYADKLKIPYVILIGEDELKEEKVSVKNM 419

Query: 422 LTGIREDMSLEEVINYASH 440
            TG +E MSLEE I    +
Sbjct: 420 ETGNQESMSLEEAIKIIKN 438


>gi|307109063|gb|EFN57302.1| hypothetical protein CHLNCDRAFT_34933 [Chlorella variabilis]
          Length = 290

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 6/171 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           ++++ + MI  +   G Y   P      D +           G      P   + D L  
Sbjct: 70  QVVVESEMISYYDVSGCYILRPYSFAIWDEIKNWFDARIKELGVQNAYFPLFITEDVLMT 129

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q   
Sbjct: 130 EKEHVEGFAPEVAWVTRSGSSELERPIAIRPTSETVMYPYYAQWIRSHRDLPLRLNQWTN 189

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             R E +     +RSREFL ++ ++   T E +     ++   Y R++  L
Sbjct: 190 VVRWEFKHPTPFIRSREFLWQEGHTCFATKEEADTEVYQILDLYRRVYEEL 240


>gi|312137400|ref|YP_004004737.1| histidyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311225119|gb|ADP77975.1| histidyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 423

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 152/441 (34%), Gaps = 52/441 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKE 92
           +  +G   +L    +   NV   +R    R G  E+  P  +   L+  +SG  +   ++
Sbjct: 4   RKPRGTRDFLFEDMELRKNVEMKLRNVFERYGYREIKTPIFEHLKLFTIKSG--EEIKEQ 61

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    D+  + +   P     +  ++ + ++     P   Y     FR E RP+ G  R 
Sbjct: 62  MYHFKDKGGRNLALRPELTAPIARLYVNKLQ-RFPKPIKMYYFGSCFRYE-RPQAG--RF 117

Query: 153 REFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR----------AESGP 201
           R+F           +PE    +    +         LGLK+  +            E   
Sbjct: 118 RQFWQFGCELIGGKSPEAEAETIALAYDC----LKELGLKNFKIHIGHMGIVRGMLEENG 173

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMD----------FPIPSENTDFDDIISLNSIVEQ 251
           + G+     + L D G+ +                   F +     D   +  +  IV  
Sbjct: 174 VKGEKQDHIMTLIDKGDKEELSRYLNEISFPSELQELLFSLIEMKGDSKILDEILDIVGY 233

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             +  A     + E L +       +   GI  G  +Y G  + + +S T     G  + 
Sbjct: 234 RRSVEAIQELKNLESLLEVFGVKNYLMDPGIARGLDYYTGIVFEIYISKTQICGGGTYNL 293

Query: 312 VQM--------GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +++          +  G  R+V AV   +   K       VAP               R+
Sbjct: 294 IELFGGEKVESTGFAFGFDRLVEAV--GNKTEKFSFADVFVAPV----------SDETRE 341

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A  KI  ++ K G     D    ++G   + AD LG    +IVG K +   +V +K   +
Sbjct: 342 AAFKIAQKIRKSGISADVDLSRRKLGKLLSYADHLGVKYTIIVGKKELKQKRVTVKDMES 401

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G ++++ ++++ +Y       
Sbjct: 402 GEQKEVQIDDLSDYLRRGLKK 422


>gi|12224878|emb|CAC21664.1| hypothetical protein [Homo sapiens]
          Length = 235

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 81/239 (33%), Gaps = 20/239 (8%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F +   T  +         D           +      +     A Y    DVH   L D
Sbjct: 7   FRLALSTRPSGFLGDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHD 63

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAV 328
           +L    +     ++    F    ++       +KG  G  +  V +    +G++  +  V
Sbjct: 64  ALGRPHQCGTIQLD----FQLPLRF----DLQYKGQAGALERPVLIHRAVLGSVERLLGV 115

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQ 387
           +  S  GK   WP  ++PF++ +I + +  +   +  ++    L   G     D D G  
Sbjct: 116 LAESCGGK---WPLWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLT 169

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +  +   A L  +  Q +VG K  S   V I+ R      +  L E +        N R
Sbjct: 170 LSRRIRRAQLAHYNFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVE-LQNTR 227


>gi|150390122|ref|YP_001320171.1| histidyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149949984|gb|ABR48512.1| histidyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 419

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 151/445 (33%), Gaps = 59/445 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        V  I ++     G  E+  P  +  +L+        D 
Sbjct: 1   MLTKVPRGTKDVLPSESYKWHYVEKIAKDVAECFGFQEIRTPVFEHTELFERGIGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL---PFTFYQIQLKFRDELRP 145
             KEM    DR  +++   P   E    + RS I++       P   Y I   FR E RP
Sbjct: 61  VEKEMYTFEDRGKRSVTLKP---EGTAPVVRSFIENKLYADAQPTKLYYITPVFRYE-RP 116

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           + G  R R+        F  +          + ++   I+ +LGL+ + +R  S  IG  
Sbjct: 117 QAG--RYRQHHQFGIEVFGASNASIDAEVIHVAMT---IYQKLGLEKLEVRINS--IGCP 169

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E          + + S    +     ++    + + +     +          +  +
Sbjct: 170 QCKEHYNEV----LKTYLSNRIDNLCGTCQSRYERNPMRIIDCKVESCQEQLTDVPLMID 225

Query: 266 KLFDSLPENKRVSARGIE-VGHIFYFGTK-------YSLPMSATFKGADGKD-------- 309
            + D   ++       +E +G  F    K       YS           GK         
Sbjct: 226 YICDECRDHFEGVQNHLEAIGVPFTIDPKIVRGLDYYSKTAFEIITDEAGKKGTLCGGGR 285

Query: 310 --HYVQMGS--------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
               V+           +G+G  R + A+     + +GI+ P       I L+ +    +
Sbjct: 286 YDQLVEQCGGPATPGVGFGMGLERAILAL-----ETQGIVIPKPEG-LDIFLVTMGEKAE 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +      KI + L ++G     D      +   ++A   +       I+G + +    V 
Sbjct: 340 LQ---GFKILSELRQMGLRADQDHLSRSTKAQFKYANKLMAQ--YTAIIGDEELERGTVS 394

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +K+  TG + ++S++++++    + 
Sbjct: 395 LKNMETGEQSEISIDKIVDILRDKL 419


>gi|38048079|gb|AAR09942.1| similar to Drosophila melanogaster CG5353 [Drosophila yakuba]
          Length = 205

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 32/234 (13%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSF 163
              P +      IF +  +S+R LP       +  R+EL     G+ R R F   DA+ F
Sbjct: 1   ALKPMNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF 60

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             TPE  K            ++   G     +   + P       E    A+    +   
Sbjct: 61  -CTPEQIKSEMKGCLEFLHHVYTIFGFSFQLV-LSTRPDNYLGELEQWNAAEKALAESLN 118

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                    P +                     A      +  + D+L    + +   ++
Sbjct: 119 EFGMPWKENPGDG--------------------AFYGPKIDITIMDALKRAHQCATIQLD 158

Query: 284 VGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
               F    +++L    ++   DG K   V +    +G++  + A++  +  GK
Sbjct: 159 ----FQLPIRFNL----SYIADDGEKKRPVIIHRAILGSVERMIAILTENFAGK 204


>gi|229491999|ref|ZP_04385816.1| histidyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229321131|gb|EEN86935.1| histidyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 423

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 139/438 (31%), Gaps = 47/438 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KGI  ++P        V   +       G   + +P  +   L+        D   
Sbjct: 7   FSAPKGIPDYVPPQSAEFVAVRDGLTRAARLAGYGHIELPIFEDTGLFARGVGESTDVVS 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGDRSVTLRPEGTAGVMRAVIEHSLDRGQLPVKVSYAGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGIDDPALDAEVIAIADA---GFRSLGLDGFRLEITSLGDDTCRPQYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+      E     ++      +  +  D  ++ +   ++    +          
Sbjct: 181 ELLQEFLFALPLDEDTRRRAEINPLRVLDDKRPDVREMTAGAPLMLDHLSESCKAHFDEV 240

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     V+ R             E  H    G +  +     + G         
Sbjct: 241 LAHLDALGVPYVVNPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMEQLGGQP 299

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP---FKISLINIKAHDQVCRDACEKI 368
           +    +GIG  R V A+     + +G     SVAP     +  + + A     + A  KI
Sbjct: 300 LSGIGFGIGVDRTVLAL-----EAEG----KSVAPPARVDVFCVPMGA---EAKAALVKI 347

Query: 369 YARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             +L   G  V         G +     AD  G  + +++G + + +  V +K   TG +
Sbjct: 348 AHQLRANGIRVDLAYGNR--GVKGSMKAADRSGAAIALVLGERELEEGVVVVKQLATGEQ 405

Query: 427 EDMSLEEVINYASHRFSN 444
           E ++L++V++       +
Sbjct: 406 EAVALDQVVDKLGELVEH 423


>gi|257077256|ref|ZP_05571617.1| glycyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 474

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 155/460 (33%), Gaps = 80/460 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK----- 91
            G Y + PLG    DN+    +E     GAI +  P +    ++  SG    +       
Sbjct: 26  AGFYDYGPLGVLLKDNIIRTWKESYMEDGAIFLDSPNITPEPVFRASGHLARFSDLAAEC 85

Query: 92  -----------------------------EM--------------------LRLADRNDK 102
                                        EM                      L  +   
Sbjct: 86  EKCKSKFKFESVLAFNKQDIIPANLEEAKEMASDTYLKCPVCGSRITNIYDFNLMYKVSG 145

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
                P   + +   F+      R  LP    Q    FR+E+ PR  ++R REF   +  
Sbjct: 146 DYYLRPETAQGIFVNFKLLFNYNRGKLPMIVGQAGKGFRNEISPRQSLIRLREFNQCEIE 205

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F L PE     +  ++  Y +I          ++  +G        E        E  +
Sbjct: 206 VF-LDPENL--EFKSLYD-YKKI---------KIKPNTGEELDITVKEAF------ERGL 246

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
             S+ F  F + ++N   +  I  + +  +   P        +    + L +N+     G
Sbjct: 247 ISSQAFAYFVLKTQNILENIGIESSKLRFRQHDPDERAHYASDSWDAEGLIDNEWFEIVG 306

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE---SSHDGKG- 337
           I     F      S          + ++    +     G  R++  ++     + DGK  
Sbjct: 307 IANRTDFDLNNHQSSSGETMTTKIEEREFIPYVIEPSYGIDRILLTLMAQSLETRDGKNV 366

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +  P  VAP+  ++  +    +  ++  E IY  + K    + +D+ G  IG ++A  D 
Sbjct: 367 LKIPYPVAPYHFAVFPL-MKKENLKEKAEYIYENMKKQDKYIVYDEAG-TIGKRYARQDE 424

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +G P  + V  + + D+ V ++ R T  ++ + +EE+++ 
Sbjct: 425 IGTPYCITVDYQTLEDNTVTVRSRDTAEQKRIKIEELLDL 464


>gi|212638574|ref|YP_002315094.1| histidyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|226737064|sp|B7GFR0|SYH_ANOFW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|212560054|gb|ACJ33109.1| Histidyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 423

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 144/442 (32%), Gaps = 48/442 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP        +  I RE   R    E+  P  +  +L++       D 
Sbjct: 1   MSFQIPRGTQDILPEQAAKWQYIEHIARELCRRYNYQEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    DR  +++   P   E    + RS +++        P   Y +   FR E R
Sbjct: 61  VQKEMYTFEDRGGRSLTLRP---EGTAAVVRSFVENKMYGDPNQPVKLYYMGPMFRYE-R 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP-MRAESGPIG 203
           P+ G  R R+F+     +              +    + I+  LGLK +  +    G + 
Sbjct: 117 PQAG--RFRQFVQFGVEALGSNDPAIDAE---VIALAMDIYRMLGLKKLKLVINSLGDVE 171

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              +H   ++            D       +     D     +  + +         +  
Sbjct: 172 SRKAHRQALIDHFQPRIHEFCDDCQARLHKNPMRILDCKKDRDHELMRTAPSILDYLNEQ 231

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSA--------TFKG 304
           +   F+ +    +      EV      G  Y           +    A         + G
Sbjct: 232 SRTYFEKVQMYLQKLGIAFEVDSRLVRGLDYYNHTAFEIMSEAEGFGAITTLCGGGRYNG 291

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G      +G + +   R++AA+     + +GI  P S       ++ +    +  
Sbjct: 292 LVQEIGGPETPGIG-FALSIERLLAAL-----EAEGISLPISEG-IDCYVVALG---EQA 341

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++    + A L K G     D    ++ +Q   AD L      I+G   +    + +KH 
Sbjct: 342 KEEAVALVAALRKEGISAEKDYQDRKVKAQLKAADRLHATYVAILGEDELQKGVINVKHM 401

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            TG ++++SL   I++  H   
Sbjct: 402 ATGEQQEVSLHTFISHMKHVLQ 423


>gi|323464278|gb|ADX76431.1| histidyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 423

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 139/437 (31%), Gaps = 48/437 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MIH   +G    LP        +   + +        E+  P  +S DL+        D 
Sbjct: 1   MIH-IPRGTQDILPEETTKWRYIENQLHKLMEVYNYQEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ D+++   P   E    + RS+I++        P   Y     FR E +
Sbjct: 60  VQKEMYTFKDKGDRSITLRP---EGTAAVVRSYIENKMQGLPNQPVKLYYNGPMFRYERK 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F      +              M    + I+   GLK + +      I  
Sbjct: 117 QK---GRYRQFNQFGVEAIGAENPSMDAEVLAMV---MHIYQSFGLKKLKL-----VINS 165

Query: 205 DLSHEFIVLADTGETQVF------CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               E  V       + F        KD       +     D  +  +    Q       
Sbjct: 166 VGDAESRVDYQNALREHFQPVIHNYCKDCQQRIKTNPMRILDCKVDRHQPEIQTAPSITD 225

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGA--DGKDHYVQM 314
             + +++  F+++  +        EV      G  Y               DG    +  
Sbjct: 226 FLNDYSKDYFEAVKSHLDRLGVPYEVDPKLVRGLDYYTHTAFELMMDNEAYDGAITTLCG 285

Query: 315 GSYGIGAMRVVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G    G + ++    E+             + + +GI +P  +    + +  +    +  
Sbjct: 286 GGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIEFP-QMQHIDLFVATMG---EKA 341

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  RL   G  V  D +  ++  Q   AD L     +++G + +   +V +KH 
Sbjct: 342 DDFAVTLLNRLRHAGISVDKDYLSRKLKGQMKQADRLNATYTIVIGDQELEAGEVAVKHM 401

Query: 422 LTGIREDMSLEEVINYA 438
            TG  + M  EE+ +Y 
Sbjct: 402 ATGESQTMKFEEIESYI 418


>gi|220929366|ref|YP_002506275.1| histidyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999694|gb|ACL76295.1| histidyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 442

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 145/440 (32%), Gaps = 51/440 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G    LP  Q   +N+  II++   + G I +  P ++ ++ L  +SG      K++ R
Sbjct: 12  PGFMELLPADQIVFNNMLDIIKKTYEKYGFIPIDTPMIEKSEVLLAKSG--GETEKQVYR 69

Query: 96  L-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                ND ++ +  T   V    + S        PF  Y I   FR E +P+ G  R RE
Sbjct: 70  FNKGDNDLSLRFDLT---VPLARYVSQHFGDLTFPFKRYHIGKVFRGE-KPQKG--RFRE 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D            +    + V Y   F  LG     +R  +  +      +  V  
Sbjct: 124 FYQCDIDIIGNENLSLINDAEILSVIYS-TFKALGFDDFTIRINNRKVLNGFFEDLQVPD 182

Query: 215 DT------------GETQVF-----------CSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            T            G  +V             ++  +DF     +     +      V+ 
Sbjct: 183 KTEVLRTIDKLEKIGSKEVLIELKSIGLSEENAQRVLDFVGTKGSCRDIIMHLKEMKVQN 242

Query: 252 WTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKYSLPMSATF------- 302
                            DS   P +  +    I  G  +Y GT Y   ++          
Sbjct: 243 EMFNEGINEMELVVDYIDSFKVPSSNYMIDLTIARGLDYYTGTIYETVLNQYPSIGSVCS 302

Query: 303 --KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQ 359
             +  +    Y      G+G     + +        GI+       P KI +I +     
Sbjct: 303 GGRYDNLAQKYTTKKLPGVGISIGFSRLFYQLR-EAGILGEMKRATPSKILVIPMNGTMG 361

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   KI       G          +IG +F+ AD LG P  ++VG   V+    ++K
Sbjct: 362 NALEIATKIRDE----GVSAEIYFNEGKIGKKFSYADKLGIPYVIVVGEDEVNSGIYKLK 417

Query: 420 HRLTGIREDMSLEEVINYAS 439
              TG + D+++E++I    
Sbjct: 418 DMATGEQTDLTVEQIIEKLK 437


>gi|319892684|ref|YP_004149559.1| Histidyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162380|gb|ADV05923.1| Histidyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 423

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 139/437 (31%), Gaps = 48/437 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MIH   +G    LP        +   + +        E+  P  +S DL+        D 
Sbjct: 1   MIH-IPRGTQDILPEETTKWRYIENQLHKLMEVYNYQEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ D+++   P   E    + RS+I++        P   Y     FR E +
Sbjct: 60  VQKEMYTFKDKGDRSITLRP---EGTAAVVRSYIENKMQGLPNQPVKLYYNGPMFRYERK 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F      +              M    + I+   GLK + +      I  
Sbjct: 117 QK---GRYRQFNQFGVEAIGAENPSMDAEVLAMV---MHIYQSFGLKKLKL-----VINS 165

Query: 205 DLSHEFIVLADTGETQVF------CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               E  V       + F        KD       +     D  +  +    Q       
Sbjct: 166 VGDAESRVDYQNALREHFQPVIHNYCKDCQQRIKTNPMRILDCKVDRHQPEIQTAPSITD 225

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGA--DGKDHYVQM 314
             + +++  F+++  +        EV      G  Y               DG    +  
Sbjct: 226 FLNDYSKDYFEAVKSHLDRLGMPYEVDPKLVRGLDYYTHTAFELMMDNEAYDGAITTLCG 285

Query: 315 GSYGIGAMRVVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G    G + ++    E+             + + +GI +P  +    + +  +    +  
Sbjct: 286 GGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIEFP-QMQHIDLFVATMG---EKA 341

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  RL   G  V  D +  ++  Q   AD L     +++G + +   +V +KH 
Sbjct: 342 DDFAVTLLNRLRHAGISVDKDYLSRKLKGQMKQADRLNATYTIVIGDQELEAGEVAVKHM 401

Query: 422 LTGIREDMSLEEVINYA 438
            TG  + M  EE+ +Y 
Sbjct: 402 ATGESQTMKFEEIESYI 418


>gi|311265228|ref|XP_003130565.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional aminoacyl-tRNA
            synthetase [Sus scrofa]
          Length = 1432

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      +++      E  + G    
Sbjct: 1015 EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1074

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1075 YFPMFVSQGALETEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1134

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E +     ++   Y ++
Sbjct: 1135 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILDLYAQV 1194

Query: 185  FHRL 188
            +  L
Sbjct: 1195 YEEL 1198



 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 397  LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              G P+++ VG + +   +     R TG +  ++  E          +
Sbjct: 1280 KQGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTLAENEAETKLHALLED 1327


>gi|153839391|ref|ZP_01992058.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|149747086|gb|EDM58074.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
          Length = 345

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + Q + G+  W   G     ++   +R++
Sbjct: 228 KALKAHLTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRDK 285

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
            N     E+  P +    LW  SG +D Y   M   +  N +     P +      I
Sbjct: 286 LNEYDYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSEN-REYAIKPMNCPGHVQI 341


>gi|307352954|ref|YP_003894005.1| glycyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307156187|gb|ADN35567.1| glycyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 572

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 85/559 (15%), Positives = 169/559 (30%), Gaps = 138/559 (24%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G +   S       G   + PLG      +  I R     + G  E+  PT+  
Sbjct: 10  ELARRRGFVWPTSECYGSVAGFIDYGPLGAMMKRKIENIWRYFYVIQDGYYEIECPTIGE 69

Query: 77  ADLWVESG-------------------RYDSYGKE------------------------- 92
             +++ SG                   R D   ++                         
Sbjct: 70  ESIYLASGHVKGFADKMIQCPHCGEYHRADHVAEDNGIENAEIMSLEDLTAALKDLTCPA 129

Query: 93  ---------------MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQ 134
                          M +      + +     P   + +   F   ++ YR+ LPF   Q
Sbjct: 130 CSETFDGAEVYYFNLMFQTTIGPGSQRKGYLRPETAQGIFTDFNRLLRFYRDKLPFGTVQ 189

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           I   +R+E+ PR G++R REF   +A  F         ++++     + +      ++  
Sbjct: 190 IGKSYRNEISPRQGMIRLREFTQAEAEIFIHPDHKDHPAFSRYADREVPLLSIADQENKE 249

Query: 195 MRAESGPIGGDLS---------------HEFIVLADTGETQVFCSKDFMD----FPIPSE 235
            R E     G  S               H+F++       +V   +   D    +     
Sbjct: 250 CRKEMSMKDGVASGIIANEYVAYYIAQTHDFMLTCGISPDKVRFRQHLPDERAHYATDCW 309

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV-----SARGIEVGHIFYF 290
           + +          +           + H ++  D      +            V ++   
Sbjct: 310 DAEIFSERFGWVEMVGIADRTNYDLNAHAKQSGDPFTVFIQYDETKRIRETKVVANMGAL 369

Query: 291 GTKY-------SLPMSATFKGADG----------------------------KDHYVQMG 315
           G KY       +  ++ +    +G                            +     + 
Sbjct: 370 GPKYRNRAKAVADALAVSSPSENGAEIELDGEKIVVPPEFYEVKEVETEINGEYVMPHVI 429

Query: 316 SYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               G  R++ AV+E S D +         + +P  VAP +++++ + A D    D    
Sbjct: 430 EPSYGIDRILYAVLEHSFDEEMVDGETRNVLRFPPKVAPVQVAVLPLMARD-GLDDIARS 488

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  +L +      +DD G  IG ++   D +G P  V V      D+ V ++ R + ++ 
Sbjct: 489 IKTKLQEEEILTEYDDSGA-IGRRYRRQDEIGTPFAVTVDYDTKEDNTVTVRERDSMMQI 547

Query: 428 DMSLEEVINYASHRFSNNR 446
              +E++    S      +
Sbjct: 548 RYDIEKLPALLSDLIKGRK 566


>gi|319400957|gb|EFV89176.1| histidyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 424

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 143/448 (31%), Gaps = 64/448 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP        +   +          E+  P  +S +L+        D 
Sbjct: 1   MI-KMPRGTQDILPQDSAKWRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSLTLRPEGTAAVVRSYIEHKMQGDPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  IG   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSIDAEILAMV---MHIYESFGLKHLKLVINS--IGDSES 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +D       +            +      A  +       
Sbjct: 172 RK-----EYNEALVKHFEPVIDTFCSDCQSRLHTNPMRILDCKIDRDKEAVKNAPRIT-- 224

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHYVQ 313
            D L  + +   + +++ H+      Y                         +       
Sbjct: 225 -DYLNNDSKSYYKQVKL-HLDNLNISYVEDPNLVRGLDYYTHTAFELMIDNPEYDGAITT 282

Query: 314 MGSYG--------------------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +   G                    +   R++ A+     D +GI    S   F + ++ 
Sbjct: 283 LCGGGRYNGLLQLLDGPDETGIGFALSIERLLMAL-----DEEGISLDVSED-FDLFVVT 336

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       K+   L + G  V  D +  +I  Q   AD L     V++G + + +
Sbjct: 337 MG---EDADRYAVKLINDLRRNGIKVDKDYLNRKIKGQMKQADRLNAKYTVVIGDQELEN 393

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
           +++ +K+ ++G  E++ L+E+INY  +R
Sbjct: 394 NEIGVKNMISGETENVQLDELINYFKNR 421


>gi|222833149|gb|EEE71626.1| predicted protein [Populus trichocarpa]
          Length = 152

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + G DG  H  V +    +G++     ++   H G    W   +AP + +++NI  
Sbjct: 5   LDAEYVGEDGDRHRPVMLHRAIVGSLERFIGILIEQHAGAMPTW---LAPVQAAVLNITD 61

Query: 357 HD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 R+  +K+       G  V  D   E+I  +     L   P  ++ G K  +   
Sbjct: 62  AQADYVREVAQKLQKAFPNQGLRVATDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGA 121

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R       MS++  I   +   +  
Sbjct: 122 VAVRARGNKDLGVMSVDAFIELVAKDIAAK 151


>gi|158290346|ref|XP_311956.4| AGAP002945-PA [Anopheles gambiae str. PEST]
 gi|157017849|gb|EAA07591.5| AGAP002945-PA [Anopheles gambiae str. PEST]
          Length = 302

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 105/360 (29%), Gaps = 71/360 (19%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDS 88
           MI  +   G Y            +      E  + G  E   P   S A L  E      
Sbjct: 1   MIEYYDVSGCYILRHWSFAIWKAIRNWFDAEITKLGVKECYFPIFVSRAALEREKTHIAD 60

Query: 89  YGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +    D    + +   PT E VM   +   I+SYR+LP    Q     R E +
Sbjct: 61  FAPEVAWVTKSGDSELAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFK 120

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +R+REFL ++ ++   + + +      +   Y +++    L +IP+       G 
Sbjct: 121 HPQPFLRTREFLWQEGHTAFASKQEADEEVLTILDLYAKVYTD--LLAIPVVK-----GR 173

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               E     D   T        ++  I +         S +                  
Sbjct: 174 KTEKEKFAGGDYTTT--------VEAYISASGRAIQGATSHHLGQNFSRMFDIVYEHPET 225

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++       +  ++ R I                                          
Sbjct: 226 KEKEYVFQNSWGITTRTI------------------------------------------ 243

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGC 377
              +I    D +G++ P  VA  ++ ++         D+      D+C ++   ++  G 
Sbjct: 244 -GVMIMVHADNQGLVLPPRVACIQVVIVPCGITATTTDEERRRLYDSCRELERTIAAAGI 302


>gi|311069241|ref|YP_003974164.1| histidyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869758|gb|ADP33233.1| histidyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 424

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 149/438 (34%), Gaps = 46/438 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +   +G    LP        V  I+R+        E+  P  +  +L+        D 
Sbjct: 1   MAYNIPRGTQDILPGESDRWQYVEQIMRDTCRTYQYKEIRTPIFEHTELFARGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P         F  + + +    P   Y +   FR E RP+ 
Sbjct: 61  VQKEMYTFQDRKGRSLTLRPEGTAAAVRAFTENKLFANPVQPTKLYYVGPMFRYE-RPQT 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F      +              +    + I+ R GLK++ +   S  +G   S
Sbjct: 120 G--RFRQFYQFGIEAIGSKDPAIDAE---VIALAMSIYQRAGLKNVKLVLNS--LGDKES 172

Query: 208 ----------------HEFIVLAD----TGETQVFCSKDFMDFPI-PSENTDFDDIISLN 246
                            EF         T   ++   K   D  +  +  +  + +   +
Sbjct: 173 RTSYREALVKHFEPRIDEFCSDCQSRLYTNPLRILDCKKDRDHELMKTAPSILEYLNEES 232

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKG- 304
               Q    Y     +  E   + +      +    E+  +   FG   +L     + G 
Sbjct: 233 KAYFQKVQQYVTELGIPFEIDPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++AA+     D +    P S A     ++ +    +  +
Sbjct: 293 VEQIGGPEAPGIG-FAMSIERLLAAI-----DAEKTELPVSQA-IDCYIVTLG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    +  +L + G     D   +++  QF  AD L      I+G   ++ +++ +K   
Sbjct: 343 DYSVSLVYKLREAGISSEIDYENKKMKGQFKTADRLNARFIAILGEDELAQNRINVKDAK 402

Query: 423 TGIREDMSLEEVINYASH 440
           TG + +++L+E+I +   
Sbjct: 403 TGEQLEVALDELIRFMKA 420


>gi|238606802|ref|XP_002396812.1| hypothetical protein MPER_02873 [Moniliophthora perniciosa FA553]
 gi|215470062|gb|EEB97742.1| hypothetical protein MPER_02873 [Moniliophthora perniciosa FA553]
          Length = 222

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 17/169 (10%)

Query: 293 KYSLPM--SATFKGAD---GKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA- 345
            +S P   +   +  +   G+   YV   S+G+ + R +  ++    D +G++ P  VA 
Sbjct: 1   NFSRPEMSNIVVEDPNDPTGQGKLYVWQNSWGL-STRTIGVMVMVHGDNQGLVLPPRVAS 59

Query: 346 ------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLL 398
                 P  I++            AC+++ A L K G     D       G +F   +  
Sbjct: 60  VQVVVVPCGITVKTTDEQRAQINQACDELAATLKKAGIKAKADLRDGYTPGYKFNDWEQK 119

Query: 399 GFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G PL++ +G K +     + ++ R TG ++ +SL+ + +       + +
Sbjct: 120 GVPLRLEIGPKDLEGRQTLSVR-RDTGEKKPVSLDNIASSIREILDSIQ 167


>gi|73662437|ref|YP_301218.1| histidyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|83305879|sp|Q49Y69|SYH_STAS1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|72494952|dbj|BAE18273.1| histidyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 420

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 138/446 (30%), Gaps = 71/446 (15%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEM 93
            +G    LP   K    + A + E        E+  P  +S +L+        D   KEM
Sbjct: 5   PRGTQDILPNETKKWRFIEARLDELMEVYNYQEIRTPIFESTELFARGVGDSTDVVQKEM 64

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRFGV 149
               D+ D+++   P   E    + RS+I++        P   Y     FR E + +   
Sbjct: 65  YTFKDKGDRSITLRP---EGTAAVVRSYIENKMQGLPNQPIKLYYNGPMFRYERKQK--- 118

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-H 208
            R R+F      +      G       M    + I+   GLK + +   S  IG   S H
Sbjct: 119 GRYRQFTQFGVEAIGAENPGVDAEVLAMA---MHIYQSFGLKHLKLVINS--IGDIDSRH 173

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E+       E  V   +  +        +            +      A  +     +  
Sbjct: 174 EY------NEALVKHFEPVIGDFCSDCQSRLHTNPMRILDCKIDKDKEAVKTAPRITEFL 227

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHYVQM 314
           +   +      +     H+   G  Y                         +       +
Sbjct: 228 NETSKQYYADVKQ----HLDDLGVPYVEDPNLVRGLDYYTHTAFELMIDNPNYDGAITTL 283

Query: 315 GSYG--------------------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              G                    +   R++ A+ E + +       D+   F + ++ +
Sbjct: 284 CGGGRYNGLLELLDGPHQTGIGFALSIERLLLALDEENIE------LDTEHDFDLFIVTM 337

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +       K+   L + G     D +  ++  Q   AD L     +++G + + ++
Sbjct: 338 G---EEADRYAVKLLNDLRRNGVKADKDYLQRKVKGQMKQADRLNANYTIVIGEQELQEN 394

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
           K+ +K+  TG  E + L++++NY   
Sbjct: 395 KINVKNMQTGESESVDLDKLVNYFKK 420


>gi|289674656|ref|ZP_06495546.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 87

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-- 387
           E + D  GIIW D++APF+I+L+ ++      R+A +K+YA L+  G +V  DD  ++  
Sbjct: 1   EKNSDENGIIWNDTLAPFQIALVPLRYETDAVREATDKLYADLTAAGFEVLLDDRDKKTS 60

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDS 414
            G +FA  +L+G P +++V  + +++ 
Sbjct: 61  PGIKFADMELIGIPHRIVVSDRGLAEG 87


>gi|256070953|ref|XP_002571806.1| threonyl-tRNA synthetase [Schistosoma mansoni]
 gi|238656954|emb|CAZ28036.1| threonyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 563

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 77/219 (35%), Gaps = 40/219 (18%)

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--------- 307
           A      +  + D+L    + +   ++    F    +++L  ++      G         
Sbjct: 347 AFYGPKIDINIMDALRRRHQCATIQLD----FQLPVRFNLSYASETDNPSGSDNNCNNIS 402

Query: 308 --------------------KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                   V +    +G++  + A++  S+ GK   WP  ++P 
Sbjct: 403 NTTNGISNHHEPINHQTDLNTHRPVIIHRAILGSVERIIAILTESYGGK---WPFWLSPR 459

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIV 406
           ++ ++ + +    C +    +  RL   G  V  D D G  +  +     LL     ++V
Sbjct: 460 QVLVVPVVS---ACDEYAIDVKNRLHDAGFMVSVDTDPGRTLNKKIRNGQLLQNNFILVV 516

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G K +++  V ++ R   +  +  +E VI       ++ 
Sbjct: 517 GEKEIANGTVNVRTRDNKVHGEHPVEHVIERFRQLAASR 555



 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +R K +  I +E    A    H+ +    +    H+ S G   +LP G    + + + IR
Sbjct: 239 KRLKEWKHIQEE----AAKRDHRKLGVEQKLFFFHELSPGSCFFLPAGAHIYNTLVSFIR 294

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
            E  + G  E+  P + ++ LW +SG +  Y
Sbjct: 295 SEYWKRGFQEVITPNIYNSALWEQSGHWQHY 325


>gi|304316701|ref|YP_003851846.1| histidyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778203|gb|ADL68762.1| histidyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 417

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 141/438 (32%), Gaps = 53/438 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        V  IIRE  +  G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDVLPSEVYKWHYVENIIREICDNFGFKEIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  H      +P   Y I   +R E RP+ G
Sbjct: 61  VRKEMYTFNDKGGRSITLKPEGTSPAVRAFVEHNLYAEAMPVKLYYITPVYRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R RE        F      +      + ++   +F RLGL ++ +   S         
Sbjct: 120 --RLREHHQFGIEMFGAHDASADAEVISVAMT---LFKRLGLNNLELNINSIGCPNCRRE 174

Query: 203 GGDLSHEF------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAP 255
                 EF       +  D  E         +D  + S      D   + N + +     
Sbjct: 175 YNKALKEFLGENIEKLCDDCKERYKINPMRVLDCKVESCKRILKDAPLMLNYLCDDCKEH 234

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF---------------GTKYSLPMSA 300
           +        E  F+ +   K    RG++      F               G +Y      
Sbjct: 235 FENLQSYLKEAGFNFVINPK--IVRGLDYYTKTAFEIISNDIGAQGTVCGGGRY----DG 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +   G         +G+G  R+   ++   + G  I  P       + +  +      
Sbjct: 289 LVEECGGPSIPGV--GFGMGIERL---LLTLENSGIEIPLPKR---TDLFICTVGDD--- 337

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +     +  RL   G  V  D+MG  + +Q   A+ L     +I+G   + +  V +K+
Sbjct: 338 AKKYAFSMALRLRNSGLSVEVDNMGRSLKAQMKYANKLNVRYTIILGEDELKNKVVRLKN 397

Query: 421 RLTGIREDMSLEEVINYA 438
              G   ++ ++ V +  
Sbjct: 398 MDNGEEIEIDIDNVCDKI 415


>gi|15679834|ref|NP_276952.1| glycyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334352|sp|O27874|SYG_METTH RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|2622981|gb|AAB86312.1| glycyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 565

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/539 (15%), Positives = 166/539 (30%), Gaps = 141/539 (26%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESG------ 84
           I+    G   + PLG    + +    RE      G  E+  PT+   +    SG      
Sbjct: 25  IYSGVAGFVDYGPLGATLKNKIMNRWREFYVVREGFYEIESPTIMPEEALKASGHVDHFN 84

Query: 85  -------------RYDSYGKE--------------------------------------- 92
                        R D   ++                                       
Sbjct: 85  DPMTQCKECMDVYRADHIIEDATGRDVEGLENQELTEIISDEGIRCPRCGGHLTHVWSYN 144

Query: 93  -MLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFG 148
            M +     R  K     P   + +   F+  ++ +RN LPF   Q+   +R+E+ PR G
Sbjct: 145 LMFQTLIGARGKKTGYLRPETAQGIFIPFKRLLRFFRNRLPFGVVQLGKSYRNEISPRQG 204

Query: 149 VMRSREFLMKDAYSF-------DLTPEGSKHSYNKMFVS--------------------- 180
           V+R REF   +A  F           E  K    +++ +                     
Sbjct: 205 VIRLREFTQAEAEIFVDPEHKTHPDFEEVKEDILRLYPAGRQMEESGTVDMTAAEALEAG 264

Query: 181 -------------YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                          R    +G+    +R     +  +++H  I   D    + F     
Sbjct: 265 VISSEVLTYHLCLAKRFLMDIGIPEDALRF-RQHLPSEMAHYAIDCWDV---EAFTDSYG 320

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR----------- 276
               I   +    D+ S +    +    +    +    +     P+  +           
Sbjct: 321 WIEIIGIADRTDYDLRSHSQHSGEDLRVFIEYDEPRRIRKRAVKPDMGKLGPKFRKDAAR 380

Query: 277 -----------VSARGIEVGHIFYFGTKYS-LPMSATFKGAD----GKDHYVQMGSYGIG 320
                         + ++    F    ++  LP   +F+  +    G+  Y  +     G
Sbjct: 381 IASALSEVDVEEIEKALDEEGRFILEGEFEILPDDVSFEDVEEVVTGRKVYPHVIEPSFG 440

Query: 321 AMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             R++  ++  S    G       P  VAP +++++ +   +++      +I   L + G
Sbjct: 441 IDRIIYTLLLHSLVDDGERTYFRLPPHVAPVEVTVLPLVNREEMVM-TALEIERNLRRSG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               +D  G  IG ++A AD +G P  V V  + + D  V +++R    +  + +EE++
Sbjct: 500 FIAEFDSSG-TIGRRYARADEIGVPFAVTVDHETLEDGTVTLRNRDDCSQVRVKIEELV 557


>gi|326201903|ref|ZP_08191773.1| histidyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325987698|gb|EGD48524.1| histidyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 442

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 143/442 (32%), Gaps = 51/442 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G    LP  Q   +N+   I++   + G I +  P ++ ++ L  +SG      K++ R
Sbjct: 12  PGFMELLPADQIVFNNMLDTIKKTYEKYGFIPLDTPMIEKSEVLLAKSG--GETEKQVYR 69

Query: 96  L-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                ND ++ +  T   V    + S        PF  Y I   FR E +P+ G  R RE
Sbjct: 70  FNKGDNDLSLRFDLT---VPLARYVSQHFGDLTFPFKRYHIGKVFRGE-KPQKG--RFRE 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI------GGDLSH 208
           F   D            +    + V Y   F  LG     +R  +  +      G  +S 
Sbjct: 124 FYQCDIDIIGNENLSVINDAEILSVIYS-TFKALGFDDFTIRINNRKVLNGFFEGLQVSD 182

Query: 209 EFIVLADTGETQVF-----------------CSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +  VL    + +                    S+  +DF     +             + 
Sbjct: 183 KTEVLRTIDKLEKIGNEAVLKELEAIGLSKENSQRVLDFVGTKGSCRDIIKHLREMNFQN 242

Query: 252 WTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKYSLPMSATF------- 302
                            DS   P         I  G  +Y GT Y   ++          
Sbjct: 243 EMFNEGIDELELVVNYIDSFKVPSANYTIDLTIARGLDYYTGTIYETVLNRYPSIGSVCS 302

Query: 303 --KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQ 359
             +  +    Y      G+G    ++ +        GI+       P +I +I +     
Sbjct: 303 GGRYDNLAQKYTTKKLPGVGISIGLSRLFYQLR-EAGILGEMKRATPSEILVIPMNGTMG 361

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   KI       G          +IG +F+ AD LG P  ++VG   V     ++K
Sbjct: 362 NALEIATKIRDE----GVSAEIYFNEGKIGKKFSYADKLGIPYVIVVGEDEVKSGIFKLK 417

Query: 420 HRLTGIREDMSLEEVINYASHR 441
              TG + D+S+E++I     +
Sbjct: 418 DMATGEQADLSVEQIIEKLKAQ 439


>gi|317128223|ref|YP_004094505.1| histidyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315473171|gb|ADU29774.1| histidyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 423

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 147/444 (33%), Gaps = 56/444 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  +  +G    LP        +     E        E+  P  +  +++        D 
Sbjct: 1   MNFKIPRGTQDILPEQSAKWQYIEQRAHELCRTYNYKEIRTPMFEQTEVFARGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    DR  +++   P   E    + RS++++  +     P   Y I   FR E R
Sbjct: 61  VQKEMYTFDDRGGRSLTLRP---EGTASVVRSYVENKMHGLPDQPVKLYYIGPMFRYE-R 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P+ G  R R+F+     +              +    + ++  LGL  + +   S  +G 
Sbjct: 117 PQSG--RMRQFVQFGVEALGSDDPAIDAE---VIALAMDLYKGLGLTDLKLVINS--LGD 169

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S      A     +    +   D     E      +        +      +  D  N
Sbjct: 170 KDSRTAHRNALIDHFKPRIEEFCSDCQARLEKNPLRILDCKKDHGHELMDTAPSILDYLN 229

Query: 265 EKLFDSLPENKRV-SARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYG- 318
           E       + +R  +A GIE         G  Y  +          DGK         G 
Sbjct: 230 ESSKAYFEQVQRYLTAIGIEFVVDATLVRGLDYYNNTAFEIMI---DGKGFGAITTLSGG 286

Query: 319 ---------------------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                                +   R++ A+     + +GI  P         L+ +   
Sbjct: 287 GRYNGLVEEFGGSDVPGIGFALSIERLLMAL-----EAQGIELPIQEG-IDAYLVVMG-- 338

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++   K+   L K G  V  D + +++ +QF  AD L     +I+G + + +  V 
Sbjct: 339 -EEPKNVAPKLLHDLRKQGLTVDTDYLNKKMKAQFKAADRLNASFAIILGEQELENDSVM 397

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           +K   TG +E++ ++E+++Y   +
Sbjct: 398 VKALSTGEQEEVKVQELVSYLKSK 421


>gi|530417|emb|CAA83730.1| Thr-tRNA Synthetase 1 [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 320

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  + + +L +  G       G+  WLP G    + +   +R+++     I +  P + 
Sbjct: 174 RDHRLINKRLNIF-GFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIG 232

Query: 76  SADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+  SG +D YG++  +  +     D+  I  P +      ++ ++ + YR+LP   
Sbjct: 233 TVELYKTSGHWDHYGEDXFQPFNGGKGSDEQFILRPMNCPHXIAVYNTNKEXYRDLPLRI 292

Query: 133 YQIQLKFRDELRPRF-GVMRS 152
            +  +  R E      G+ R 
Sbjct: 293 CEHAIHHRFESSGSLTGLERV 313


>gi|138896141|ref|YP_001126594.1| histidyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166227970|sp|A4IR95|SYH_GEOTN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134267654|gb|ABO67849.1| Histidyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 426

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 141/442 (31%), Gaps = 52/442 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    V  + R+   R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDLLPGETEKWQYVEQVARDLCRRYGYEEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H      N P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPNQPVKLYYAGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-----------R 196
           G  R R+F+     +   +          +    + I+  LGLK I +           R
Sbjct: 120 G--RFRQFVQFGVEAIGSSDPAIDAE---VMALAMHIYKALGLKHIRLVINSLGDVDSRR 174

Query: 197 AESGPIGGDLSHEFIVLA-------DTGETQVFCSKDFMDFPIPS-------ENTDFDDI 242
           A    +    S     L        +T   ++   K   D  + +          D    
Sbjct: 175 AHREALVRHFSDRIHELCPDCQARLETNPLRILDCKKDRDHELMASAPSILDYLNDESSA 234

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D    +  D             E  G       G +Y+    
Sbjct: 235 YFEKVKQYLTMLDIPFVIDSRLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R++AA+     + +GI  P         ++ +    +
Sbjct: 291 -GLVQEIGGPETPGIG-FALSIERLLAAL-----EAEGIELPIH-RGIDCYVVAVG---E 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   ++   L + G  V  D +G ++ +Q   AD LG     I+G + +      +K
Sbjct: 340 RAKDETVRLVYELRRAGLRVEQDYLGRKMKAQLKAADRLGASFVAIIGDEELEKQTAAVK 399

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           H  +G + D+ L E+ ++   R
Sbjct: 400 HMASGEQTDVPLGELASFLIER 421


>gi|291235359|ref|XP_002737612.1| PREDICTED: AGAP008929-PA-like, partial [Saccoglossus kowalevskii]
          Length = 314

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 11  LQENP---RDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E      +A    H+ + R       H+ S G   + P G    + +   I+ E    
Sbjct: 29  LKEWKHFQEEAAKRDHRKIGRDQELYFFHELSPGSCFFHPKGAHIYNTLINYIKSEYRTR 88

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           G  E+  P + ++ LW  SG +  Y + M       +K     P +     +  +   +
Sbjct: 89  GFQEVVSPNIYNSKLWETSGHWQHYAENMFSFESEKEK-FALKPMNCPGHWNTAKYACR 146


>gi|220932052|ref|YP_002508960.1| histidyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|254782333|sp|B8CXE6|SYH_HALOH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|219993362|gb|ACL69965.1| histidyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 419

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 144/438 (32%), Gaps = 45/438 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G    LP        +    R         E+  P  +  +L+        D 
Sbjct: 1   MDVKAPRGTNDILPPVSLKWQYIEDTARRIFQMYNYKEIRTPIFEYTELFQRGIGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P     +   F  H    +  P  ++ I   FR E RP+ G
Sbjct: 61  VEKEMYTFEDKGGRSITLRPEGTASVVRAFLEHKIYGQVQPTKYFYIGPMFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----- 203
             R R+F      +F             +    L I  RLGL  + +   S  IG     
Sbjct: 120 --RFRQFHQLGVEAFGSNDPALDAE---VIALGLDILKRLGLTDVEVFINS--IGCPECR 172

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAA 258
              S E     ++ + ++           P      +N +   +I     +  +      
Sbjct: 173 ARYSDELKQYLESHQDRLCKDCKARLNKNPLRILDCKNEECSLVIKNAPKILDYLCDNCR 232

Query: 259 TSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSL--PMSATFKG-------AD 306
                 ++  D L    RV     RG++      F  K+       A F G        +
Sbjct: 233 VHFEDVQEYLDLLGIKYRVDPTLVRGLDYYTNTAFEIKFKELGAQDAIFGGGRYNGLTEE 292

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKISLINIKAHDQVCRDA 364
             +  +    + +G  R++ A+     D KGI  P  DS+    + L+ I    +  + A
Sbjct: 293 IGNKSIPGIGFAVGIERLILAL-----DKKGIKLPVNDSI---DVYLVTIG---ERAKRA 341

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                  L + G     D +G  I SQ   AD  G    +I+G   +   K  +K+  TG
Sbjct: 342 AFNYTYLLRESGITAEIDYLGRSIKSQMKSADRTGASYTIIIGDSELDSGKATVKNMRTG 401

Query: 425 IREDMSLEEVINYASHRF 442
            + ++ L  +I       
Sbjct: 402 EQVEIMLANLIEEMQKLV 419


>gi|312136460|ref|YP_004003797.1| glycyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224179|gb|ADP77035.1| glycyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 591

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 87/553 (15%), Positives = 161/553 (29%), Gaps = 149/553 (26%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           I++   G Y + PLG      +    RE    + G  E+  P +   ++   SG  D + 
Sbjct: 29  IYEGLSGFYDYGPLGVLLKRKIIEKWREYYTIKEGFYEVETPNVMPKEVLKASGHVDHFN 88

Query: 91  KEMLRLAD-----------RNDKAMIYGPTHEEVMTDIFR-------------SHIKSYR 126
             M +  D           +++          E +T+I               SH+ SY 
Sbjct: 89  DPMTKCKDCSEIYRADHLIKDETGEDVEGLSNEKLTEIISKKKIRCPKCGGHLSHVWSYN 148

Query: 127 NL------P-----------------------FTFYQIQLKF---------RDELRPRFG 148
            +      P                         FY+ +L F         R+E+ PR G
Sbjct: 149 LMFQTLIGPTGKKVGYLRPETAQGIFVLFKRLMRFYRNKLPFGVVQIGKSFRNEISPRQG 208

Query: 149 VMRSREFLMKDAYSF---------------------------------------DLTPEG 169
           V+R REF   +A  F                                       +   E 
Sbjct: 209 VIRLREFTQAEAEIFVEPDNKTHPKFHKVADEKLKLFSAEKQLNGEKPEKISLKEAVDEN 268

Query: 170 SKHSYNKMFVSYL--RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              S    +  YL       LG+    +R          S      AD  + +V+  +  
Sbjct: 269 IISSELLAYHLYLTKEFLTDLGIPEEMIRFRQ----HLPSEMAHYAADCWDAEVYMGEFG 324

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR------- 280
               +   +    D+ S      +    +         K  +  P   ++  R       
Sbjct: 325 WIEVVGIADRTNYDLKSHMESSGEDLRIFVEYEKPKLVKKVEIHPRMDKIGPRFKEKAKK 384

Query: 281 ------------------------GIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQM 314
                                    I++ +  +    Y   +    K     GK     +
Sbjct: 385 ILKKLKNMEPEKIKKELSKNEGKIKIKIDNEEF--EIYEDEIEIKEKRKYIKGKKVLPHV 442

Query: 315 GSYGIGAMRVVAAVIESSHDGKGII----WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                G  R+  A +  +           +P  +AP  +++  +    ++      KI  
Sbjct: 443 IEPSFGIDRIFYATMIHNFVEDDERTYFDFPTDIAPIPVAVFPLLNKKELIN-LAIKIKK 501

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K G  V +D+ G  IG ++A AD +G P  + V  + + D  V I++R    +  ++
Sbjct: 502 DLQKEGLIVNYDESG-TIGRRYARADEIGIPFAITVDHQSIEDGTVTIRNRSDKKQVRIA 560

Query: 431 LEEVINYASHRFS 443
           + ++ +       
Sbjct: 561 INKIPDTIKKLIK 573


>gi|288555365|ref|YP_003427300.1| histidyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288546525|gb|ADC50408.1| histidyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 426

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 150/444 (33%), Gaps = 46/444 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    +    +E  +R    E+  P  +  +++        D 
Sbjct: 1   MSMQIPRGTQDLLPGEIEIWQYIEQKSKEICSRYNYKEIRTPIFEHTEVFARGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR ++++   P     +      + +    + P   +     FR E RP+ 
Sbjct: 61  VQKEMYTFTDRGERSLTLRPEGTAGVVRSFVGNKLYGEASQPTKLFYTGPMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    + I++ LGL  I +   S  +G   S
Sbjct: 120 G--RMRQFVQFGVEALGSADPAIDAE---VLALVMSIYYELGLTDIKLVLNS--LGDKES 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A     +    +   D     E      +               +  D + E+ 
Sbjct: 173 REAHRDALINHFKPSIGEFCSDCQNRLEKNPLRILDCKKDREHPLMQTAPSIHDYYTEES 232

Query: 268 FDSLPENKRVSA-------------RGIE-VGHIFY--------FGTKYSLPMSATFKG- 304
                E K+                RG++   H  +        FG   +L     + G 
Sbjct: 233 AAYFKEVKQHLDQMNLPYVVDPTLVRGLDYYNHTAFEVMAEGEGFGAITTLCGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G +     R++ A+      GK   + + +  F ++L          +
Sbjct: 293 VQEFGGPETPGIG-FAFSIERLIMAL---KAQGKVPDFGNQLDCFLVTL------GDAAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L + G     D + +++ +QF  AD L      I+G   ++++++ +K+  
Sbjct: 343 AKSVELLYQLRQAGIRCDKDYLDKKMKAQFKAADRLNVRYTAILGDNELNENRINVKNME 402

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           TG + +++L+  I Y   +    +
Sbjct: 403 TGEQVEVALDTFITYMKEQVEGGK 426


>gi|27468230|ref|NP_764867.1| histidyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57867126|ref|YP_188769.1| histidyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811035|ref|ZP_04825508.1| histidyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875945|ref|ZP_06284812.1| histidine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|293366413|ref|ZP_06613091.1| histidine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|32130102|sp|Q8CS98|SYH_STAES RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71153564|sp|Q5HNS1|SYH_STAEQ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|27315776|gb|AAO04911.1|AE016748_145 histidyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637784|gb|AAW54572.1| histidyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805453|gb|EES58110.1| histidyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294970|gb|EFA87497.1| histidine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|291319447|gb|EFE59815.1| histidine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735204|gb|EGG71496.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737401|gb|EGG73655.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 424

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 71/448 (15%), Positives = 141/448 (31%), Gaps = 64/448 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP        +   +          E+  P  +S +L+        D 
Sbjct: 1   MI-KMPRGTQDILPQDSAKWRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSLTLRPEGTAAVVRSYIEHKMQGEPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  IG   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSIDAEILAMV---MHIYESFGLKHLKLVINS--IGDSES 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +D       +            +      A  +       
Sbjct: 172 RK-----EYNEALVKHFEPVIDTFCSDCQSRLHTNPMRILDCKIDRDKEAVKNAPRIT-- 224

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHYVQ 313
            D L  + +     +++ H+      Y                         +       
Sbjct: 225 -DYLNNDSKSYYEQVKL-HLDNLNISYVEDPNLVRGLDYYTHTAFELMIDNPEYDGAITT 282

Query: 314 MGSYG--------------------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +   G                    +   R++ A+     D +GI    S   F + ++ 
Sbjct: 283 LCGGGRYNGLLQLLDGPDETGIGFALSIERLLMAL-----DEEGISLDVSED-FDLFVVT 336

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       K+   L + G  V  D +  +I  Q   AD L     V++G + + +
Sbjct: 337 MG---EDADRYAVKLINDLRRNGIKVDKDYLNRKIKGQMKQADRLNAKYTVVIGDQELEN 393

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
           +++ +K+ ++G  E++ L+E++NY   R
Sbjct: 394 NEIGVKNMISGESENVQLDELVNYFKSR 421


>gi|242242903|ref|ZP_04797348.1| histidyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233618|gb|EES35930.1| histidyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 424

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 71/448 (15%), Positives = 141/448 (31%), Gaps = 64/448 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP        +   +          E+  P  +S +L+        D 
Sbjct: 1   MI-KMPRGTQDILPQDSAKWRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGGRSLTLRPEGTAAVVRSYIEHKMQGEPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  IG   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSIDAEILAMV---MHIYESFGLKHLKLVINS--IGDSES 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +D       +            +      A  +       
Sbjct: 172 RK-----EYNEALVKHFEPVIDTFCSDCQSRLHTNPMRILDCKIDRDKEAVKNAPRIT-- 224

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHYVQ 313
            D L  + +     +++ H+      Y                         +       
Sbjct: 225 -DYLNNDSKSYYEQVKL-HLDNLNISYVEDPNLVRGLDYYTHTAFELMIDNPEYDGAITT 282

Query: 314 MGSYG--------------------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +   G                    +   R++ A+     D +GI    S   F + ++ 
Sbjct: 283 LCGGGRYNGLLQLLDGPDETGIGFALSIERLLMAL-----DEEGISLDVSED-FDLFVVT 336

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       K+   L + G  V  D +  +I  Q   AD L     V++G + + +
Sbjct: 337 MG---EDADRYAVKLINDLRRNGIKVDKDYLNRKIKGQMKQADRLNAKYTVVIGDQELEN 393

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
           +++ +K+ ++G  E++ L+E+INY  +R
Sbjct: 394 NEIGVKNMISGETENVQLDELINYFKNR 421


>gi|14521875|ref|NP_127351.1| histidyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|13878794|sp|Q9UY31|SYH_PYRAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|5459095|emb|CAB50581.1| hisS histidyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 431

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 145/453 (32%), Gaps = 61/453 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  KG   +LP        V   IRE     G  E+  P ++   L+   SG  +  
Sbjct: 1   MIERV-KGTRDFLPEEMVKRRWVFEKIREVFETYGFKEVLTPVMEYTKLFQLRSG--EEV 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D+  + +   P     +  ++ +  +     P  +Y I   FR E  P+ G 
Sbjct: 58  VKQLYAFKDKGGRDVALRPDMTSSVARLYVNSFQ-TAPKPIKWYYIANMFRYEE-PQSG- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R REF              +      +   ++  +   GLK   +      +  + +  
Sbjct: 115 -RYREFWQAGVELIGSDKIEADAE---VIALFVDSYLSTGLKDFTVNIGDRVLLDEFAKM 170

Query: 210 FIVLADTGETQVFC--SKDFMDFPIPSENTDFDDIISLNSI-----------------VE 250
             V  D G  ++     K   +  + +      D   +  +                  E
Sbjct: 171 LGVKDDIGLMRIIDKKDKLSQEEFLKALGEFGLDENGIEKVLNLIEIKGKPDDVLPLAEE 230

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----- 305
            +T+  A         L D L   +      I++G    F    S+   A          
Sbjct: 231 LFTSERAKEEISRLYNLVDILSWYEVDEWIQIDLGIARGFDYYTSIVFEAIVPNDLGIGS 290

Query: 306 --------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                          GK        + IG  R++  ++E        + P+  A   + +
Sbjct: 291 IGGGGRYDNLIEVFGGKPTPA--TGFAIGIERLIP-ILEWKG-----LLPELKAGPDVFV 342

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +       RD    I  RL K G     +  G ++      A+ +G  L +IVG + +
Sbjct: 343 IPVGDS----RDVATAIVTRLRKAGIRSDIELSGRKLRKALDYANRIGVRLSIIVGKRDL 398

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               V I+   +G + ++ ++ V+       + 
Sbjct: 399 ERGVVTIRDLESGNQVEVPVDNVVTKVRELLNQ 431


>gi|312110102|ref|YP_003988418.1| histidyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311215203|gb|ADP73807.1| histidyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 423

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 144/449 (32%), Gaps = 62/449 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  +G    LP   +    V  I R+   R    E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDILPGETEKWQYVEKIARDICRRYNYREIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    DR  +++   P   E    + RS +++        P   Y I   FR E R
Sbjct: 61  VQKEMYTFEDRGGRSITLRP---EGTAPVVRSFVENKMYGDPNQPIKLYYIGPMFRYE-R 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P+ G  R R+F+     +              M    + ++  LGLK   +R     +G 
Sbjct: 117 PQAG--RFRQFVQFGVEALGSDDPAIDAEVIAMA---MELYQSLGLK--KVRLVINSLGD 169

Query: 205 DLS----------------HEFIVLADTGETQ----VFCSKDFMDFPIPSENTDFDDIIS 244
             S                HEF         +    +   K   D  + +      D ++
Sbjct: 170 IESRKAHRQALIDHFQNRIHEFCEDCQVRLKKNPLRILDCKKDRDHELMATAPSILDYLN 229

Query: 245 LNSIVEQWTAP-------YAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKY 294
             S                    D    +  D             E  G I     G +Y
Sbjct: 230 EESSRYFEKVKSYLAKLGIPFEVDARLVRGLDYYNHTTFEIMSDAEGFGAITTLCGGGRY 289

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +           G      +G + +   R++AA+     D +G+  P         ++ I
Sbjct: 290 N-----GLVQEIGGPEAPGIG-FALSIERLLAAL-----DAEGVALPVQ-RGIDCYVVAI 337

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +  ++   ++   L K G     D    +I +Q   AD L      I+G   ++  
Sbjct: 338 G---EKAKEESVQLVHELRKAGIAADKDYQDRKIKAQLKAADRLNAKFVAILGEDELAKE 394

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + IK   TG + ++ L  V++Y   R S
Sbjct: 395 VINIKEMGTGEQTEVPLPSVVDYLKERLS 423


>gi|126179365|ref|YP_001047330.1| glycyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|125862159|gb|ABN57348.1| glycyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 576

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 83/541 (15%), Positives = 163/541 (30%), Gaps = 140/541 (25%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESG----------- 84
            G   + PLG     NV  + R     + G  E+  PT+ +  ++V SG           
Sbjct: 32  AGFIDYGPLGAMLKRNVENLWRSFYVFQEGYYEIECPTVGNEAIFVASGHVKEFADKMVQ 91

Query: 85  --------RYDSYGKE----------------------------------------MLRL 96
                   R D   +E                                        M + 
Sbjct: 92  CPHCGEYLRADHIAEENGIENAGTLSAEALQAALYELPCPSCKEPLGEAGVFAFNLMFQT 151

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
                + +     P   + +   F   ++ YR+ LPF   QI   +R+E+ PR G++R R
Sbjct: 152 TIGPGSQRKGYLRPETAQGIFTDFSRLLRFYRDKLPFGAVQIGKSYRNEISPRQGMIRLR 211

Query: 154 EFLMKDAYSF----------------------------------------DLTPEGSKHS 173
           EF   +A  F                                         +      + 
Sbjct: 212 EFSQAEAEIFVHPDRKDHPAFHRYADYTAPLLTIARQLDGQEPAAMTMRAAVDEGVIANE 271

Query: 174 YNKMFVSY-LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           Y   +++   RI   +G+  + +R     I           AD  + +V+  +      +
Sbjct: 272 YVAYYIALTHRILTAIGVDPVKLRFRQHLI----DERAHYAADCWDAEVYSGRFGWVEIV 327

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-----------------FDSLPENK 275
              +    D+ S           +    +                         ++ +  
Sbjct: 328 GIADRTNYDLRSHAGHSGTSMTVFMPYDEPKRVVKRRITADMGVLGPRYRGKAKAIADAL 387

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSAT-----FKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             S  G +   +   G ++ +P              G++    +     G  R++   +E
Sbjct: 388 AASEPGEDGARVTVDGEEFFIPADLYQVREEEVEVRGEEVMPHVIEPSYGIDRMIYVALE 447

Query: 331 SSHDG--------KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            S+          K +  P +VAP ++++  +   D       + I  RL++      +D
Sbjct: 448 HSYAEEEVEGEIRKVLRLPPAVAPIQVAVFPLMNRD-GLETVAQTITERLTQCRILAQYD 506

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D G  IG ++   D +G P  V V  + + D+ V ++ R +  +  + +E +    S   
Sbjct: 507 DSGA-IGRRYRRQDEVGTPFAVTVDYETLEDNTVTVRDRDSMEQVRIPIERLPEVLSALI 565

Query: 443 S 443
           S
Sbjct: 566 S 566


>gi|311031528|ref|ZP_07709618.1| histidyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 426

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 148/448 (33%), Gaps = 54/448 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    + A  +E        E+  P  +S +L++       D 
Sbjct: 1   MAIQIPRGTQDILPGTVEKWQYIEAKAKEICELYNYKEIRTPIFESTELFLRGVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    DR  +++   P      T        + +       P   Y I   FR E 
Sbjct: 61  VQKEMYTFEDRGGRSLTLRPEG----TAAVARSYVNNKMFGSPTQPTKLYYIGQMFRYE- 115

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP+ G  R R+F+     +              +    + ++  LGL ++ +   S  +G
Sbjct: 116 RPQAG--RFRQFVQFGIEALGSNDPSIDAE---VIALAVELYKSLGLNNLKVVINS--LG 168

Query: 204 GDLS----------------HEFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDI- 242
              S                +EF        +    ++   K   D  + +      D  
Sbjct: 169 DKESRQAHRDALINHFQPRINEFCGDCQGRLEKNPLRILDCKKDRDHELMATAPSILDYL 228

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSAT 301
              +         Y +   +  E   + +           E+      FG   +L     
Sbjct: 229 NEESKAYFDKVVAYLSALGIQYEIDPNLVRGLDYYYHTAFEIMSTSEGFGAITTLCGGGR 288

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G      +G + +   R+++A    + + K   + DS+      ++ +    
Sbjct: 289 YNGLVQEIGGPETPGIG-FALSIERLISA--MEAENVKFP-FEDSI---DCYVVALGDK- 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              ++   K+   L K G     D   +++ +QF  AD L     ++ G   +    V I
Sbjct: 341 --AKETAVKLLFDLRKAGIVAEKDYQDKKMKAQFKAADRLQAKYTIVFGDDELEKGVVSI 398

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           K   TG +++++ E+ + + + + S  R
Sbjct: 399 KEMETGEQQEVAFEDAVAFITAKKSGER 426


>gi|224027144|ref|ZP_03645510.1| hypothetical protein BACCOPRO_03905 [Bacteroides coprophilus DSM
           18228]
 gi|224020380|gb|EEF78378.1| hypothetical protein BACCOPRO_03905 [Bacteroides coprophilus DSM
           18228]
          Length = 326

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 4/137 (2%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L +L+E   RD      ++ L         KG+  WLP G      +   +R  
Sbjct: 191 KMLDEYLVMLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQDFLRRI 249

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIF 118
           Q R    E+  P + +  L+V SG Y  YGK+  +        +     P +      I+
Sbjct: 250 QARYDYQEVICPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCMIY 309

Query: 119 RSHIKSYRNLPFTFYQI 135
           ++  +SYR+LP    + 
Sbjct: 310 KNSPRSYRDLPLRIAEF 326


>gi|196250095|ref|ZP_03148789.1| histidyl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196210279|gb|EDY05044.1| histidyl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 426

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 141/442 (31%), Gaps = 52/442 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    V  + R+   R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDLLPGETEKWQYVEQVARDLCRRYGYEEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H      N P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPNQPVKLYYAGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-----------R 196
           G  R R+F+     +   +          +    + I+  LGLK I +           R
Sbjct: 120 G--RFRQFVQFGVEAIGSSDPAIDAE---VMALAMHIYKALGLKRIRLVINSLGDVDSRR 174

Query: 197 AESGPIGGDLSHEFIVLA-------DTGETQVFCSKDFMDFPIPSENTDFDDI------- 242
           A    +    S     L        +T   ++   K   D  + +      D        
Sbjct: 175 AHREALVRHFSDRIHELCPDCQVRLETNPLRILDCKKDRDHELMASAPSILDYLNDESRA 234

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D    +  D             E  G       G +Y+    
Sbjct: 235 YFEKVKQYLTMLDIPFVIDSRLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R++AA+     + +GI  P         ++ +    +
Sbjct: 291 -GLVQEIGGPETPGIG-FALSIERLLAAL-----EAEGIELPIH-RGIDCYVVAVG---E 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   ++   L + G  V  D +G ++ +Q   AD LG     I+G + +      +K
Sbjct: 340 RAKDETVRLVYELRRAGLRVEQDYLGRKMKAQLKAADRLGASFVAIIGDEELEKQTAAVK 399

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           H  +G + D+ L E+ ++   R
Sbjct: 400 HMASGEQTDVPLGELASFLIER 421


>gi|330836946|ref|YP_004411587.1| glycyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
 gi|329748849|gb|AEC02205.1| glycyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
          Length = 444

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 71/483 (14%), Positives = 144/483 (29%), Gaps = 116/483 (24%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I Q S       G Y + P+G +  +N+     +E  +     + +    L  
Sbjct: 12  LCKRRGFIFQSSEIYGGLSGAYDYGPMGVELKNNIRDFWWKEMTQLHDDIVGLDASILMH 71

Query: 77  ADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEV------------MTDIFRSH 121
             +W  SG   ++   M+   +   R     I       V               +F+SH
Sbjct: 72  PRVWEASGHVSNFTDPMVDCKQCKSRFRADQIDLSAPCPVCGTKGSFTEPRNFNLMFQSH 131

Query: 122 IKSYRN-----------------------------LPFTFYQIQLKFRDELRPRFGVMRS 152
           I +  +                             +PF   QI   FR+E+  +  + RS
Sbjct: 132 IGANTDSSSVVYLRPETAQGIYVDFKNVVQSSRVKVPFGIAQIGKSFRNEITTKNFIFRS 191

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F   P      +       +  + R+G++                 E + 
Sbjct: 192 CEFEQMEMQFF-CKPGTEDEWFPYWRGQRMDFYIRMGIRP----------------ESLR 234

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               G  ++                          I   +   +     VH+   +D   
Sbjct: 235 WHQHGPDELA-----------------FYAKDAYDIQFLFPMGWQELEGVHSRTDYDLSQ 277

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                                +S    +         +   +     G  R V   +  +
Sbjct: 278 H------------------QTFSGKDQSYLDPETNDRYIPYVVETSAGLTRNVLMALSDA 319

Query: 333 HDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +D + I          +  ++AP K++++ +   D    +  +K+   L +    VF+D 
Sbjct: 320 YDEEEIAPGDVRTVLHFHPAIAPVKVAVLPLVKKD-GLDEYAQKLEKELRE-DYTVFFDR 377

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G  IG ++   D +G P  V V  + + D+ V ++ R +  +  + +  +         
Sbjct: 378 SGA-IGRRYRRQDEIGTPYCVTVDYQTLEDNTVTLRFRDSMEQVRVPVAGIAARIKQEMK 436

Query: 444 NNR 446
           + +
Sbjct: 437 DYK 439


>gi|294495367|ref|YP_003541860.1| glycyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666366|gb|ADE36215.1| glycyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 585

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 83/552 (15%), Positives = 169/552 (30%), Gaps = 149/552 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESG----------- 84
            G Y + PLG      +  I R+      G +E+  PT+   D++V SG           
Sbjct: 28  AGFYDYGPLGSTLKRRIENIWRQFYVVREGFMEIETPTIGIEDIFVASGHVGGFSDPLCE 87

Query: 85  --------RYDSYGKE---------------------------------------MLRLA 97
                   R D   ++                                       M   +
Sbjct: 88  CEQCKEAFRADHLIEDYVAVADALSNEEVDDIISKYDICCPECEGKLGKAREFNLMFETS 147

Query: 98  --DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSRE 154
               N +     P   + +   F+   + YR  LPF   QI   +R+E+ PR GV+R RE
Sbjct: 148 IGPGNGRPGYLRPETAQGIFIDFQRLARYYREKLPFGVTQIGKSYRNEISPRQGVIRLRE 207

Query: 155 FLMKDAYSFDLTPE---------------------GSKHSYNKM--------------FV 179
           F   +A  F    E                       +    +M              F+
Sbjct: 208 FTQAEAEIFIHPQEKKHPEIAAVENDLIILYSDKAQERGELEEMTIREAIDKKIIAHEFL 267

Query: 180 SYL-----RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFPIP 233
           +Y      R   R+G+    +R            E    A D  + ++  ++      + 
Sbjct: 268 AYHIALTNRFLKRIGISPDKLRFRQ-----HKKDEMAHYAIDCWDGEIKTTRFGWIETVG 322

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR----VSARGIEVG-HIF 288
             +    D+ +   + +   A Y    +    K F   P+  +       +  +V   + 
Sbjct: 323 IADRTDYDLNAHTKMSKDDLAVYIEYDEPKMVKKFAVKPDMGKLGPLFRKKAKDVAETLK 382

Query: 289 YFG---TKYSLPMSATFKGAD------------------GKDHYVQMGSYGIGAMRVVAA 327
             G    +    ++    G +                  G+     +     G  R+   
Sbjct: 383 QLGPEELEKDGDINIVVNGEEVSVPKDVVSAEEVEEKISGETVVPHVIEPSYGIDRIFYT 442

Query: 328 VIESSHDGKG--------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           ++E +++ +               + +   +AP +++++ +  +         +I + L 
Sbjct: 443 LLEHAYETEMAPTAEEEKEEERTLLKFKSEIAPIQVAVLPLMKNSDELVSKGRQIVSNLK 502

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G  V +DD G  IG ++   D +G P  + +  + + D+ V I+ R T  +    + +
Sbjct: 503 DMGLMVAYDDSG-TIGRRYRRNDEIGTPYSITIDYETLEDNTVTIRERDTMKQVRTPVSD 561

Query: 434 VINYASHRFSNN 445
           +    +      
Sbjct: 562 LEGNLNKLIRGK 573


>gi|15238286|ref|NP_196649.1| tRNA synthetase-related / tRNA ligase-related [Arabidopsis
           thaliana]
 gi|8979722|emb|CAB96843.1| putative protein [Arabidopsis thaliana]
 gi|332004222|gb|AED91605.1| tRNA synthetase/ligase-related protein [Arabidopsis thaliana]
          Length = 309

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 5/130 (3%)

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCR--DACEKIYARLSKVGCDVF 380
             A   +  D KG+++P  VAP ++ +I   IK         DACE + + L   G    
Sbjct: 84  FEAACMTHGDDKGLVFPPKVAPVQVVVIHVPIKGAADYQELCDACEAVESTLLGAGIRAE 143

Query: 381 WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            D       G ++A  +L G PL++  G + +++ +V I  R  G + D+   ++I    
Sbjct: 144 ADIRDNYSCGWKYADQELTGVPLRIETGPRDLANDQVRIVTRDNGAKMDVKRGDLIEQVK 203

Query: 440 HRFSNNRPVL 449
                 +  L
Sbjct: 204 DLLEKIQSNL 213


>gi|295399338|ref|ZP_06809320.1| histidyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978804|gb|EFG54400.1| histidyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 423

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 144/449 (32%), Gaps = 62/449 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  +G    LP   +    V  I R+   R    E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDILPGETEKWQYVEKIARDICRRYNYREIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    DR  +++   P   E    + RS +++        P   Y I   FR E R
Sbjct: 61  VQKEMYTFEDRGGRSITLRP---EGTAPVVRSFVENKMYGDPNQPIKLYYIGPMFRYE-R 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P+ G  R R+F+     +              M    + ++  LGLK   +R     +G 
Sbjct: 117 PQAG--RFRQFVQFGVEALGSDDPAIDAEVIAMA---MELYQSLGLK--KVRLVINSLGD 169

Query: 205 DLS----------------HEFIVLADTGETQ----VFCSKDFMDFPIPSENTDFDDIIS 244
             S                HEF         +    +   K   D  + +      D ++
Sbjct: 170 IESRKAHRQALIDHFQNRIHEFCEDCQVRLKKNPLRILDCKKDRDHELMATAPSILDYLN 229

Query: 245 LNSIVEQWTAP-------YAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKY 294
             S                    D    +  D             E  G I     G +Y
Sbjct: 230 EESSRYFEKVKAYLEKLGIPFEVDARLVRGLDYYNHTTFEIMSDAEGFGAITTLCGGGRY 289

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +           G      +G + +   R++AA+     D +G+  P         ++ I
Sbjct: 290 N-----GLVQEIGGPEAPGIG-FALSIERLLAAL-----DAEGVALPVQ-RGIDCYVVAI 337

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +  ++   ++   L K G     D    +I +Q   AD L      I+G   ++  
Sbjct: 338 G---EKAKEESVQLVHELRKAGIAADKDYQDRKIKAQLKAADRLNAKFVAILGEDELAKE 394

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + IK   TG + ++ L  V++Y   R S
Sbjct: 395 VINIKEMGTGEQTEVPLPSVVDYLKERLS 423


>gi|222528609|ref|YP_002572491.1| histidyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|254782306|sp|B9MPF7|SYH_ANATD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222455456|gb|ACM59718.1| histidyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 421

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 134/433 (30%), Gaps = 37/433 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE     G  E+  PT +  +L+        D   K
Sbjct: 4   QAPKGTKDVLPEESYMWQYVENKFREVCKLYGYQEVRFPTFEYTELFQRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P        +F  H  + R +P  FY I   FR E     G  R
Sbjct: 64  EMYTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYE--NTQG-GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHE 209
            REF      +F  +   +      +       F  LGL +I +   S   P+      +
Sbjct: 121 FREFHQFGIENFGSSSPVTDAE---VISLAYNFFTSLGLDNITVNINSIGCPVCRKEYVK 177

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +    +  +Q  C                        I +    P     D   +  F+
Sbjct: 178 NLKEYFSANSQKLCHTCHQRLDKNPMRILDCKEEGCKLITKDAPKPIDYLCDDC-KSHFE 236

Query: 270 SLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGAD------GKDHYVQMGSYGI 319
           S+      +    +V      G  Y       + AT    +      G+   +     G 
Sbjct: 237 SVKTYLDSAMVSYKVDPFIVRGLDYYTKTVFEIVATVSDKELAICGGGRYDNLIEQIGGP 296

Query: 320 GA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                     +  +  ++E +      + P   A  ++  + +    +       +I   
Sbjct: 297 SIAGIGFAIGVERLLMLLEQNG-----LLP---ARSQVPRVFVATIGENGIKKAFEIARM 348

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G     ++MG  + SQ   AD +G    +I+G   +     ++++  T   E + +
Sbjct: 349 LRFEGISTVVEEMGRSLKSQMKYADKIGCEFSIIIGDDEIEKGVCKVRNMKTSSEEIVEI 408

Query: 432 EEVINYASHRFSN 444
           E +  Y   +   
Sbjct: 409 ENICEYLKEKLQK 421


>gi|308174457|ref|YP_003921162.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607321|emb|CBI43692.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328554376|gb|AEB24868.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328912781|gb|AEB64377.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 424

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 141/436 (32%), Gaps = 42/436 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +   +G    LP        V  I+RE        E+  P  +  +L+        D 
Sbjct: 1   MAYHIPRGTQDILPGESDRWQFVEQIMRETCRTYQYKEIRTPIFEHTELFARGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P         F  + + +    P   Y +   FR E RP+ 
Sbjct: 61  VQKEMYTFEDRKGRSLTLRPEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYE-RPQT 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------- 199
           G  R R+F      +              +    + I+ + GLK++ +   S        
Sbjct: 120 G--RFRQFYQFGIEAIGSKDPAVDAE---VIALAMSIYRKAGLKNVKLVLNSLGDQDSRK 174

Query: 200 ----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSI 248
                      P  G+   +      T   ++   K   +  +        D     ++ 
Sbjct: 175 AYREALVKHFEPRIGEFCSDCQSRLHTNPLRILDCKKDREHELMKTAPSILDYLNEESAA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKG--- 304
             Q    Y     +  E   + +      +    E+  +   FG   +L     + G   
Sbjct: 235 YFQKVQQYITALGIPFEIDPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVE 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G + +   R++AA+     +                ++ +    +  +D 
Sbjct: 295 QIGGPEAPGIG-FAMSIERLLAAIDAEKTE------LPVNQGIDCYIVTLG---EKAKDY 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D   +++  QF  AD LG     I+G   ++ +K+ +K   TG
Sbjct: 345 SVSLVYKLREAGISSEIDYENKKMKGQFKTADRLGARFIAILGEDELAQNKINVKDAETG 404

Query: 425 IREDMSLEEVINYASH 440
            + ++ L+E+I     
Sbjct: 405 EQREVVLDELIQVLKA 420


>gi|76800818|ref|YP_325826.1| glycyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|76556683|emb|CAI48255.1| glycine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 578

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 89/567 (15%), Positives = 170/567 (29%), Gaps = 153/567 (26%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G     +       G Y++ P G     N+  I R+      G +E+  PT+  
Sbjct: 9   ELAKRRGFFFSSNEAYGGTAGFYTYGPEGAALKRNLEDIWRDIFVRELGNMELEAPTVMP 68

Query: 77  ADLWVESG-------------------RYDSYGKEMLRLADRNDKAMI-------YGPTH 110
             ++  SG                   R D   ++   + D  D              TH
Sbjct: 69  EAVFEASGHLDGFDDMIIECPECGATHRADHLVED--EIEDIEDAEAYEPTEVAELIATH 126

Query: 111 E---------------EVMTDIFRSHI---------------------------KSYRNL 128
                           E    +F ++I                            +   L
Sbjct: 127 HIECPSCGESLAGESVEEFNLMFGTNIGPGSSAPGYLRPETAQGIFVEFPRLKEYARNKL 186

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           PF   QI   +R+E+ PR  ++R REF   +   F + PE  +   +++    L ++   
Sbjct: 187 PFGVAQIGRAYRNEISPRRALVRVREFTQAELEHF-IDPERDEPPIDRVADVELPLYSVA 245

Query: 189 -------GLKSIPMR--AESGPI-------------------GGDLSHEFIVLADTGETQ 220
                  G+++  +    +SG I                   G D+          GE  
Sbjct: 246 NQNAENGGVETYTVAEAVDSGIIESEWVAYYLGRSMDFYERIGIDMDRFRYRQHLPGERA 305

Query: 221 VFCSKDFMDF------PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            + +  +          +      +     L+   +     +         K  +    +
Sbjct: 306 HYAADCWDAETELGGSWVEVTGFAYRSDYDLSKHGDYSKEEFTLFRQYDEPKTVERATVD 365

Query: 275 KRVSARGIEVG--------------------------HIFYFGTKYSLP-----MSATFK 303
             +S  G E G                           +   G +Y++P      +   +
Sbjct: 366 PDMSYLGPEFGGAAGDIAAALESLAGRDRSAFDGDEVTVEVDGDEYTVPVERTGFAVEEQ 425

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK--------GIIWPDSVAPFKISLINIK 355
              G+     +     G  R+V +V+  SH            +  P  +AP  +++  + 
Sbjct: 426 TEAGEHITPHVVEPSFGVGRLVYSVLVHSHGTDTVDDEERTYLDLPAELAPTTVAVFPLM 485

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D    D   ++   L + G +V +DD G  IG ++   D +G P  V V  +   D  
Sbjct: 486 TKD-GLDDRAREVSETLREAGFEVAYDDTGN-IGRRYRRQDEVGTPYCVTVDYETQEDGT 543

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V I+ R +  +  + +E +    +   
Sbjct: 544 VTIRERDSTDQTRVPVEGLPAAIAELV 570


>gi|228987655|ref|ZP_04147769.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772115|gb|EEM20567.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 476

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 149/454 (32%), Gaps = 58/454 (12%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AES-GPIGGDLSH-------------EFIVLA----DTGETQVFCSKDFMDFPIPSENTD 238
             S G      SH             EF        +    ++   K   +  +      
Sbjct: 217 LNSLGDAASRQSHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPS 276

Query: 239 FDDIISLNSIVEQW-------TAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF 290
             + ++ +S V                  D +  +  D             E  G I   
Sbjct: 277 ITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTL 336

Query: 291 --GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G +Y+           G      +G + +   R++ A+   +     I  P       
Sbjct: 337 SGGGRYN-----GLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSID 384

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             ++ +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G 
Sbjct: 385 CYVVALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGE 441

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +    + +K   TG +E+++L+   +Y + + 
Sbjct: 442 DELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|307102784|gb|EFN51052.1| hypothetical protein CHLNCDRAFT_141561 [Chlorella variabilis]
          Length = 641

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 70/177 (39%), Gaps = 16/177 (9%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           R ++V    +    YS  + A++         G +   QMGS    +  ++  V  +  D
Sbjct: 372 RALQVAQSHHLADNYSRALGASYSTSAEQQEWGGEFMSQMGSGLRAS--LLGGVTLAHGD 429

Query: 335 GKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             G+  P ++AP ++ +  +     + Q   D  E++ A L+  G  V  D+   +   +
Sbjct: 430 DAGLALPPTLAPVQVVITPVLTRSCNRQGLADEAERVRAALAAAGVRVAVDNRRLKPAVR 489

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLE--EVINYASHRF 442
           F  ++ LG PL++ +G + +      +  R      G    +S E   ++       
Sbjct: 490 FRASEQLGAPLRIEIGPQDIKARSCVVARRTIPGRAGKLRGVSTEPQALVESVLELL 546


>gi|327400952|ref|YP_004341791.1| ATP phosphoribosyltransferase regulatory subunit [Archaeoglobus
           veneficus SNP6]
 gi|327316460|gb|AEA47076.1| ATP phosphoribosyltransferase regulatory subunit [Archaeoglobus
           veneficus SNP6]
          Length = 416

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 147/425 (34%), Gaps = 33/425 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKE 92
           +  +G   +LP   +    + A++R      G  E++ PT +  +L+  +SG  +   +E
Sbjct: 4   ERPRGTRDFLPDEMEKRRAIEAVMRRIAESYGYREIATPTFEHLELFTIKSG--EGIVEE 61

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +    D+  + +   P     +  +F +   S    P  FY     FR E RP+ G  R 
Sbjct: 62  LYAFKDKGGRDLALRPELTAPVMRLFVNEC-SVMPRPLRFYYFANCFRYE-RPQKG--RY 117

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-------PIGGD 205
           REF          +   S      +     RI   L L         G        I  D
Sbjct: 118 REFWQFGVELIGSSSHLSDAE---VIALAYRIMDELNLDFELHIGHVGLLRHLLKDIEED 174

Query: 206 LSHEFIVLADTGETQ---VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            + + + L D  + +    +  +      +  +     ++     ++ + +         
Sbjct: 175 RASKIMRLIDKKDVEGLSSYLREINAPEELAEKIYALIELTGSRDVLVEASRLIPDFDMS 234

Query: 263 HNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----GKDHYVQMGS 316
           H EKL D         V   GI  G  +Y G  +    +    GA     G   Y     
Sbjct: 235 HMEKLCDVLDSMNVNYVIDLGIARGLDYYTGVVF-EAYAKHGLGAQKQICGGGSYRLTHL 293

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +G   +      +      +         P  I ++N+    +  R     I   L K G
Sbjct: 294 FGGEDVPSTGFALGFDRIAEICEITPPQKPV-IVVVNVGFEGEAFR-----IAEELRKQG 347

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  D M   I  QF+ A+ +     V+VG + +   +  +K+ +TG   ++S EE++ 
Sbjct: 348 FRVVTDVMERNIRKQFSYANDINASFAVVVGKREIESGRYTLKNMVTGEHYELSFEELVK 407

Query: 437 YASHR 441
           + S  
Sbjct: 408 HLSRE 412


>gi|309366994|emb|CAP20463.2| CBR-PARS-2 protein [Caenorhabditis briggsae AF16]
          Length = 265

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 50/264 (18%)

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             P++A+SG  GG +SHE+ V +   E                   DF D  +      +
Sbjct: 12  DYPVQADSGIHGGHISHEYHVRSSLEE-------------------DFVDYCTQCGTFSK 52

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
              P   +    + +   S           +E+ H F+ GTKYS  + A F+G       
Sbjct: 53  EETPKMCSRCSASPQKIAS-----------VEIAHTFHLGTKYSEALGAKFQG-----KP 96

Query: 312 VQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIY 369
             M  +GIG  R++ A I+      K +  P +++PF   +I  K+    V  +      
Sbjct: 97  FYMCCFGIGVSRLLPATIDLLSVSDKALRLPRAISPFDAVIIVKKSLMSNVIVEMTSSSA 156

Query: 370 ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG---SKFV--SDSKVEI----- 418
           +R  K G     DD  E   G +   A+ LG P  +++     + +   +  +E+     
Sbjct: 157 SRYLKGGI--LLDDRIEMSPGKRIHEANRLGIPFIIVLANETERSLVTQEPVIEVFTTHP 214

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           K      +  M+L+  +++   + 
Sbjct: 215 KSADPVDQGSMTLDRFVSFVQSQL 238


>gi|312623087|ref|YP_004024700.1| histidyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203554|gb|ADQ46881.1| histidyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 421

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 140/431 (32%), Gaps = 33/431 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE     G  E+  PT +  +L+        D   K
Sbjct: 4   QAPKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTELFQRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P        +F  H  + R +P  FY I   FR E     G  R
Sbjct: 64  EMYTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYE--NTQG-GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHE 209
            REF      +F  +   +      +       F  LGL +I +   S   P+      +
Sbjct: 121 FREFHQFGIENFGSSSPVTDAE---VISLAYNFFASLGLDNITVNINSIGCPVCRKEYVK 177

Query: 210 FIVLADTGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE- 265
            +    +  +Q  C          P+   +   +D   +     +           H E 
Sbjct: 178 NLKEYFSANSQKLCHTCHQRLDKNPMRILDCKEEDCKLIAKDAPKPIDYLCDDCKSHFES 237

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-----GKDHYVQMGSYG 318
                DS   + +V    I  G  +Y  TK    + AT    +     G  +   +   G
Sbjct: 238 VKTYLDSAMVSYKVDPY-IVRGLDYY--TKTVFEIVATVSDKELAICGGGRYDNLIEQIG 294

Query: 319 IGAMRVVAAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +   +   I         +  G++ P   A  ++  + +    +       +I   L 
Sbjct: 295 GNSTPGIGFAIGVERLLMLLEQNGLL-P---ARSQVPRVFVATIGENGIKKAFEIARMLR 350

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     ++MG  + SQ   AD +G    +I+G   +     ++++  T   E + +E 
Sbjct: 351 FEGISTVVEEMGRSLKSQMKYADKIGCEFSIIIGDDEIEKGVCKVRNMKTSSEEIVEIEN 410

Query: 434 VINYASHRFSN 444
           +  Y   +   
Sbjct: 411 ICEYLKEKLQK 421


>gi|15613814|ref|NP_242117.1| histidyl-tRNA synthetase [Bacillus halodurans C-125]
 gi|20139937|sp|Q9KDG2|SYH_BACHD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|10173867|dbj|BAB04970.1| histidyl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 428

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 136/439 (30%), Gaps = 42/439 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  +G    LP   +    +     +   R    E+ VP  +  +L++       D 
Sbjct: 1   MAIQIPRGTQDILPGDVETWQWIEQKAYDLCRRYNYQEIRVPMFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P     +T  +  + +    N P   + I   FR E RP+ 
Sbjct: 61  VQKEMYTFEDRGGRSLTLRPEGTASVTRAYVSNKLYGQANQPTKLFYIGPMFRYE-RPQS 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP-MRAESGPIGGDL 206
           G  R R+F+     +              +    +R +  LGLK++  +    G     L
Sbjct: 120 G--RMRQFVQFGVEALGSADPAIDAE---VLALVMRFYEELGLKNLKLVINSLGDTDSRL 174

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +H   ++            D  D    +     D     +  +              ++ 
Sbjct: 175 AHREALVNHFKPRIHEFCNDCQDRLEKNPLRILDCKKDRDHELMGTAPSIHDYLSTESKA 234

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGAD------------------ 306
            F+ +            V      G  Y           G                    
Sbjct: 235 YFEKVQSYLTALNIPFVVDATLVRGLDYYNHTAFEVMVDGEGFGAITTLCGGGRYNGLVE 294

Query: 307 --GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G + +   R + A+            P         ++ +    +  +D 
Sbjct: 295 EIGGPETPGIG-FALSIERAIMALEAQQAK------PAHNQAIDCYVVTLG---EAAKDK 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L   G     D +  ++  Q   AD L     VI+G   ++  KV +K+  TG
Sbjct: 345 GVELVYQLRNAGISAEKDYLDRKMKGQLKAADRLHAKWTVILGEDELAVGKVNVKNMETG 404

Query: 425 IREDMSLEEVINYASHRFS 443
            + D++L +++++   +  
Sbjct: 405 EQTDVALTDLVSHMKQQVE 423


>gi|218883366|ref|YP_002427748.1| glycyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218764982|gb|ACL10381.1| Glycyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 583

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/549 (15%), Positives = 165/549 (30%), Gaps = 157/549 (28%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G Y + P+G     N+  +  +    +    +E+  P +    ++  SG  +S+     
Sbjct: 32  AGFYDFGPVGVLLKRNLINLWLKTFVYSNDLVVEIETPVINPRIVFKASGHEESFMD--- 88

Query: 95  RLADRNDKAMIYGPTH---------------EEVMT-----------------------D 116
            + +      +Y   H               EE+ +                        
Sbjct: 89  PVVECLKCGRVYRADHLVKEAAGIDVEGLSPEEIHSVILRNNIKCPECGGDLGKPFYTLL 148

Query: 117 IFRSHIKSYR---------------------------NLPFTFYQIQLKFRDELRPRFGV 149
           +F++ I  Y+                            LP    Q+    R+E+ PR G+
Sbjct: 149 LFKTEIGPYKGEIGYLRPENAQGMFINFANILRVARNRLPLGIAQVGKVARNEISPRQGL 208

Query: 150 MRSREFLMKDAYSFDLTPEGSKHS---YNKMFVSYLRIF--------------------- 185
           +R REF + +   F   PE  + +    N +    +R+                      
Sbjct: 209 LRLREFTIMELEFF-FDPEEVEEASGYINSIADVKVRVLTSEARVRGVEEPVEYTIRELV 267

Query: 186 ---------------------HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                                 RLG+    +R         L HE    +     Q   +
Sbjct: 268 EKQIVKTPWLVYWIGLGEVFARRLGIPHEKIRFIE-----KLPHERAHYSQQTFDQEVYT 322

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK--LFDSLPENKRVSARGI 282
           + +    I          +S +    +    +    +   E+          K     G 
Sbjct: 323 EKYGWIEIAGYAYRTTYDLSRHIQYSKADLTFFKHYEKPVERIIPKAYPDPGKIKDLYGG 382

Query: 283 EVGHI-FYFGTK-----YSLPMSATFKGADG-------------------KDHYVQMGSY 317
           E+G I      K     Y       +   +G                   +     +   
Sbjct: 383 EMGRIMERLAQKTPEEIYRELAEKGYVEIEGLKMPSEAFIVKQEREKIHGEKIIPHVVEP 442

Query: 318 GIGAMRVVAAVIESSH---DGKG-IIWPDSVAPFKISLINI----KAHDQVCRDACEKIY 369
             G  R++  V+E S+   DGK  +  P  +AP+ +++  +    K       +    IY
Sbjct: 443 SFGVERLLYIVLEYSYTVRDGKTVLKLPVHLAPYHVAVFPLVTGKKQEHARIIEIARNIY 502

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL   G  V +DD    IG ++A  D +G P  V V  + + D  V ++ R + ++E +
Sbjct: 503 RRLITRGFRVIYDD-DGSIGRRYARVDEIGIPYAVTVDYQTLEDGTVTVRDRDSSLQERV 561

Query: 430 SLEEVINYA 438
            ++E+  Y 
Sbjct: 562 KIDELEKYL 570


>gi|164687517|ref|ZP_02211545.1| hypothetical protein CLOBAR_01158 [Clostridium bartlettii DSM
           16795]
 gi|164603291|gb|EDQ96756.1| hypothetical protein CLOBAR_01158 [Clostridium bartlettii DSM
           16795]
          Length = 420

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 127/434 (29%), Gaps = 36/434 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G     P        V    RE     G  E+  P  +  +++  S     D 
Sbjct: 1   MLSKAPRGTKDITPKDVYKWHYVEKKFREICALYGYEEIRTPIFEHTEVFARSVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR D+ +   P     +   F  +       P   Y I   FR E RP+ G
Sbjct: 61  VQKEMYSFTDRGDRQLSLKPEGTAGVIRSFIENKMYADTQPTKLYYITPCFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS- 207
             R R+F                     +    ++ F+ +GLK++ +   S  +G     
Sbjct: 120 --RQRQFHQFGIEVLGSDGPSVDAE---VISLAVQFFNEMGLKNLSVNINS--VGCPTCR 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK- 266
            E+         +              +N             E           +  +  
Sbjct: 173 EEYNRKLKEYLDKKVDVLCETCLERKDKNPMRVIDCKNPHCKENLQDIPFMIDHLCEDCK 232

Query: 267 -LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             FD L    +       V      G  Y    +      D        G          
Sbjct: 233 DHFDKLQTYLKEMDINYVVDKTIVRGLDYYKKTAFEIISNDIGSQSTVCGGGRYD----- 287

Query: 326 AAVIESSHDGKGI----------IWPDSVAPFKISLINIKAHDQVCR---DACE----KI 368
             ++E     KGI              ++    I + N K+ D       DA +    K+
Sbjct: 288 -GLVEMLGGPKGISGIGFALGAERLLLTLENNNIEIENPKSTDIYIATIGDAAKTKSFKL 346

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D + + + +QF  +D L     V++G   +++    +K+  T  +  
Sbjct: 347 IKDLRTNHISADNDHLDKSLKAQFKYSDKLNAKYTVVIGDDELANDTATLKNMKTSEQTT 406

Query: 429 MSLEEVINYASHRF 442
           + L E+++    R 
Sbjct: 407 IKLSELVDELKKRL 420


>gi|294501365|ref|YP_003565065.1| histidyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351302|gb|ADE71631.1| histidyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 422

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 145/443 (32%), Gaps = 52/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    V    RE        E+  P  +  +L++       D 
Sbjct: 1   MSVQIPRGTQDILPGKVEYWQFVEQRAREICRAFNYQEIRTPMFEHTELFLRGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR D+++   P     +      + +      P   + I   FR E RP+ 
Sbjct: 61  VQKEMYTFKDRGDRSLTLRPEGTAAVGRSFVSNKMFGNPTQPTKLFYIGPMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------- 199
           G  R R+F+     +  +           +    +  +  LGLK + +   S        
Sbjct: 120 G--RFRQFVQFGVEALGVNDPAIDAE---VLALLMSFYQSLGLKKLKLVVNSLGDTESRQ 174

Query: 200 ----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                      P  G+   +     +    ++   K   D  + +      D ++  S  
Sbjct: 175 AHRQALIDHFAPRIGEFCSDCQSRLEKNPLRILDCKKDRDHELMATAPSILDYLNDYSKE 234

Query: 250 EQWTAPYA-------ATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D    +  D             E  G I     G +Y+    
Sbjct: 235 YFEKVQQYLTDLDIDYVVDPTLVRGLDYYNHTAFELMSEAEGFGAITTLCGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R+++A+     + +GI  P       +    +   D+
Sbjct: 291 -GLIQEIGGPETPGIG-FALSIERLLSAL-----EAEGIELPVE---TGVDCYVVTMGDE 340

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++    I   L + G     D   +++ +QF  AD +     V++G   ++   V +K
Sbjct: 341 -AKEKSVSIVNTLRRAGFVADKDYQDKKMKAQFKAADRVQAKFVVVLGDDELAKQVVNVK 399

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           +  +G ++++S++++++Y   + 
Sbjct: 400 NMESGEQQEVSIDQLVSYLQQQV 422


>gi|229180680|ref|ZP_04308020.1| Histidyl-tRNA synthetase 2 [Bacillus cereus 172560W]
 gi|228602825|gb|EEK60306.1| Histidyl-tRNA synthetase 2 [Bacillus cereus 172560W]
          Length = 462

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 149/449 (33%), Gaps = 48/449 (10%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 32  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 91

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 92  GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 148

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 149 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 202

Query: 197 AES-GPIGGDLSHEFIVLA--DTGETQVFCSKDFMDFPIP--------SENTDFDDIISL 245
             S G      +H   ++A  +    +            P          N +       
Sbjct: 203 LNSLGDAASRQAHRDALIAHFEPRIDEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPS 262

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSL 296
            +      +            + D   E      RG++     +F        FG   +L
Sbjct: 263 ITEYLNEDSAVYYEKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTL 322

Query: 297 PMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                + G     G      +G + +   R++ A+   +     I  P         ++ 
Sbjct: 323 SGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYVVA 375

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +  
Sbjct: 376 LG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDK 432

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + +K   TG +E+++L+   +Y + + 
Sbjct: 433 GIINLKDMATGEQEEVALDVFASYVAEKL 461


>gi|304314183|ref|YP_003849330.1| glycyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587642|gb|ADL58017.1| glycyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 564

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 90/549 (16%), Positives = 166/549 (30%), Gaps = 143/549 (26%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESG------ 84
           I+    G   + PLG    + +    RE      G  E+  PT+   +    SG      
Sbjct: 23  IYSGVAGFVDYGPLGATLKNKIMNRWREFYVVREGFYEIESPTIMPEEALKASGHVDHFN 82

Query: 85  -------------RYDSYGKE--------------------------------------- 92
                        R D   ++                                       
Sbjct: 83  DPMTQCKECMDVYRADHIIEDATGRDVEGLENQELTEIISDEAIRCPRCGGHLTHVWSYN 142

Query: 93  -MLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFG 148
            M +     +  K         + +   F+  ++ +RN LPF   Q+   +R+E+ PR G
Sbjct: 143 LMFQTLIGAKGKKTGYLTLDTAQGIFIPFKRLLRFFRNRLPFGVVQLGKSYRNEISPRQG 202

Query: 149 VMRSREFLMKDAYSFDLTPEG--------------------------------SKHSYNK 176
           V+R REF   +A  F + PE                                 +  +  K
Sbjct: 203 VIRLREFTQAEAEIF-VNPEDKSHPDFDTVKGDKLRLYSADDQLDGSEPSEMTAAEAVEK 261

Query: 177 ----------MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                           R    +G+    +R     +  +++H  I   D    + F    
Sbjct: 262 GIVSSEILTYHLCLAKRFLTDIGIPEDALRF-RQHLPSEMAHYAIDCWDV---EAFTDSY 317

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR------ 280
                I   +    D+ S +    +    +         K     P+  R+  R      
Sbjct: 318 GWIEIIGIADRTDYDLKSHSQYSGEDLRVFIEYEKPKKIKRRAVKPDMGRLGPRFRKDAA 377

Query: 281 -------GIEVGHI---------FYFGTKYS-LPMSATFKGAD----GKDHYVQMGSYGI 319
                   IE   +         F    ++  LP   TF+  +    G+  Y  +     
Sbjct: 378 RIAQALSEIEADEVEKALRNEGKFILDGEFEILPDDVTFEDVEEVVTGEKVYPHVIEPSF 437

Query: 320 GAMRVVAAVIESS----HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           G  R++  ++  S     D      P  VAP ++S+  +    ++  +   +I  +L K 
Sbjct: 438 GIDRIIYTLLLHSLVDEDDRTYFRLPPHVAPVEVSVFPLVNKKEMV-EVALEIKRKLRKS 496

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G    +D  G  IG ++A +D +G P  V V  + + D  V ++ R    +  + +EE+ 
Sbjct: 497 GFIAEFDSSG-TIGRRYARSDEIGVPFAVTVDHETLEDGTVTLRSRDDCSQIRLKIEELD 555

Query: 436 NYASHRFSN 444
           +       +
Sbjct: 556 SKLEEFIKS 564


>gi|54020011|ref|YP_115575.1| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|53987184|gb|AAV27385.1| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|312601026|gb|ADQ90281.1| Glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 455

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/498 (13%), Positives = 146/498 (29%), Gaps = 134/498 (26%)

Query: 26  MLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSA 77
           +   G +   S+   G+   Y +  LG     N+     +    +   A  +    L + 
Sbjct: 14  LRELGFVFPSSQIYGGLANSYDYGHLGVLLRKNIENFWADFFVNSNPNAFFIDSKILLNP 73

Query: 78  DLWVESGRY-------------------DSYGKEMLR----------------------- 95
            +W  SG                     D   +E                          
Sbjct: 74  KVWQASGHLDNFVDLLVENKINKKRYRVDHLFEEFFPEVAFEKLSQDEIRGYLSQIQLLE 133

Query: 96  ---------------------LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFY 133
                                + +     +   P   + +   F++ +++ +N LP    
Sbjct: 134 NTKVEWASPKKFNLLFPTYQGIIEDEKTLLYLRPETAQGIFINFKNLLRTTKNSLPLIIA 193

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           Q+   FR+E+ P   + R+REF+  +   F L P+ S++ +            +LG    
Sbjct: 194 QVGKSFRNEISPGNFIFRTREFVQLELEIF-LKPDQSENFFQNEIEKIKNFLKKLGFARN 252

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +R                         +  K+ +     +      +       +   +
Sbjct: 253 SIRLN-----------------------YHKKEKLAHYAKATVDFEYNFNFGWGELIGIS 289

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                    H+EK  + L                                 A GK     
Sbjct: 290 NRGDYDLKNHSEKSGEKLEF----------------------------VDSATGKKFLPH 321

Query: 314 MGSYGIGAMRVVAAVIESSH------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +    +G  R++ AV+E         +   +  P  ++P+K++++ +           EK
Sbjct: 322 IIEPSMGLDRLMLAVLEECFCFDSVKNRYFLKLPFILSPYKVAVLPLLKK---FNFLAEK 378

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I+  L            G  IG ++   D++G    + +  K V +S V ++ R T  ++
Sbjct: 379 IWKELISQKISATLVTSG-SIGKRYYHQDVIGTYFCITIDQKSVENSIVTLRFRDTTEQK 437

Query: 428 DMSLEEVINYASHRFSNN 445
            + ++E+  +    F N 
Sbjct: 438 TLKIDEITKFIKENFVNE 455


>gi|282890618|ref|ZP_06299141.1| hypothetical protein pah_c022o225 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499615|gb|EFB41911.1| hypothetical protein pah_c022o225 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 556

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/420 (12%), Positives = 125/420 (29%), Gaps = 44/420 (10%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L     +        + WLP G+     V           G  ++ +  L   + +    
Sbjct: 165 LGQEMELFLPAGISSWVWLPRGESLRAAVLKWCENGYAANGYQKIGMTGLLPLEHFSFKP 224

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             +   +E   + ++ ++  +   T          +        P  F++ + +F     
Sbjct: 225 SVEKKIREQSWIVEKEEEEYVLPSTQLSSAFFAASALCS----FPLRFFESEKRFSPAAS 280

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +  G+++S+   M +AY F LT E   H                G ++           
Sbjct: 281 DQLDGLLKSQTCEMSNAYLFCLT-EQVLHELISSLQFIEETVKVFGFEAQWY-------- 331

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                            ++   +               +               A S   
Sbjct: 332 -----------------LYPKAEKNAAAKKQWPQAIAFLHEALKFCHLNYQVEEAFSSWR 374

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY-GIGAM 322
             ++   L ++     +G ++    +    ++L   A      G      +  +  +G+ 
Sbjct: 375 GPRIEVKLFDSLNRQWKGPQLEFDLFSAESFALASQAK-----GLQSTPWVIRWTALGST 429

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
               A++   ++G+   W   +AP ++ +  I    +   +  +KI   +      V  D
Sbjct: 430 ERWIALLIEQNEGRLPFW---LAPEQVRIFPIG---EKVIEYAKKIQVLMLNQNLRVAID 483

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHR 441
                +  +   A     P  VIVG K   ++++ ++       + D+ +++ +   S  
Sbjct: 484 KRQHPLAEKIYDATRQRVPYLVIVGDKEERENRLTVRSFDDKTAKTDVEIKDFLALLSKE 543


>gi|154686897|ref|YP_001422058.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166227943|sp|A7Z751|SYH_BACA2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|154352748|gb|ABS74827.1| HisS [Bacillus amyloliquefaciens FZB42]
          Length = 424

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 138/440 (31%), Gaps = 50/440 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +   +G    LP        V  I+RE        E+  P  +  +L+        D 
Sbjct: 1   MAYHIPRGTQDILPGESDRWQFVEQIMRETCRTYQYKEIRTPIFEHTELFARGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P         F  + + +    P   Y +   FR E RP+ 
Sbjct: 61  VQKEMYTFEDRKGRSLTLRPEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYE-RPQT 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F      +              +    + I+ + GLK + +   S  +G   S
Sbjct: 120 G--RFRQFYQFGIEAIGSKDPAVDAE---VIALAMSIYRKAGLKHVKLVLNS--LGDQDS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A     +    +   D            +        +      +  D  NE+ 
Sbjct: 173 RKSYREALVKHFEPRIGEFCSDCQSRLHTNPLRILDCKKDREHELMKTAPSILDYLNEES 232

Query: 268 FDSLPENKRVSARGIEVGHIFYF------GTKY-----------SLPMSATFKGADGKDH 310
                + K+      ++G  F        G  Y           +    A    A G  +
Sbjct: 233 AAYFEKVKQYLN---DLGIPFEIDPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRY 289

Query: 311 YVQM----------GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              +            + +   R++AA+     +                ++ +    + 
Sbjct: 290 DGLVEQIGGPEAPGIGFAMSIERLLAAIDAEKTE------LPVNQGIDCYIVTLG---EK 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +D    +  +L + G     D   +++  QF  AD LG     I+G   ++ +K+ +K 
Sbjct: 341 AKDYSVSLVYKLREAGISSEIDYENKKMKGQFKTADRLGARFIAILGEDELAQNKINVKD 400

Query: 421 RLTGIREDMSLEEVINYASH 440
             TG + ++ L+E+I     
Sbjct: 401 AETGEQREVVLDELIQVLKA 420


>gi|329724725|gb|EGG61231.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 424

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 139/448 (31%), Gaps = 64/448 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP        +   +          E+  P  +S +L+        D 
Sbjct: 1   MI-KMPRGTQDILPQDSAKWRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSLTLRPEGTAAVVRSYIEHKMQGEPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  IG   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSIDAEILAMV---MHIYESFGLKHLKLVINS--IGDSES 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +D       +            +      A  +       
Sbjct: 172 RK-----EYNEALVKHFEPVIDTFCSDCQSRLHTNPMRILDCKIDRDKEAVKNAPRITDY 226

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHYVQ 313
            ++  ++     +     H+      Y                         +       
Sbjct: 227 LNNDSKSYYERVKL----HLDNLNISYVEDPNLVRGLDYYTHTAFELMIDNPEYDGAITT 282

Query: 314 MGSYG--------------------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +   G                    +   R++ A+     D +GI    S   F + ++ 
Sbjct: 283 LCGGGRYNGLLQLLDGPDETGIGFALSIERLLMAL-----DEEGISLDVSED-FDLFVVT 336

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       K+   L + G  V  D +  +I  Q   AD L     V++G + + +
Sbjct: 337 MG---EDADRYAVKLINDLRRNGIKVDKDYLNRKIKGQMKQADRLNAKYTVVIGDQELEN 393

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
           +++ +K+ ++G  E++ L+E++NY   R
Sbjct: 394 NEIGVKNMISGESENVQLDELVNYFKSR 421


>gi|229175078|ref|ZP_04302595.1| Histidyl-tRNA synthetase 2 [Bacillus cereus MM3]
 gi|228608374|gb|EEK65679.1| Histidyl-tRNA synthetase 2 [Bacillus cereus MM3]
          Length = 476

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|216263944|ref|ZP_03435938.1| glycyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|215979988|gb|EEC20810.1| glycyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 445

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 152/478 (31%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G++ + PLG +  +N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGVWDYGPLGIELKENIKREWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEV------------MTDIFRSH 121
           +++W  SG  D +   M+   D   R     +    +                  +F++H
Sbjct: 70  SEIWKASGHIDGFSDSMVDCKDCKSRFRADFVDLSKNCPNCKVGNNFTSPRNFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEIYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVAKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +R +   +    S E   
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKIRPDRLRLKAHNSTELAH 244

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A +                               I  ++   +     +HN   +D   
Sbjct: 245 YAKSAFD----------------------------IEYEFPFGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +K  +   +   H      +Y        + + G    V M      +        E  
Sbjct: 277 HSKFSNNSKVFEYHDLLTKERYVP---YVIETSAGLTRSVLMTLCDAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EVARRIYMELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V V    + D  V ++ R    ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKRIFINDLYSYIKTEILNYKE 441


>gi|268567760|ref|XP_002647866.1| C. briggsae CBR-PRS-2 protein [Caenorhabditis briggsae]
          Length = 258

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 102/265 (38%), Gaps = 50/265 (18%)

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           K+  ++A+SG  GG +SHE+ V +   E                   DF D  +      
Sbjct: 4   KTYQVQADSGIHGGHISHEYHVRSSLEE-------------------DFVDYCTQCGTFS 44

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +   P   +    + +   S           +E+ H F+ GTKYS  + A F+G      
Sbjct: 45  KEETPKMCSRCSASPQKIAS-----------VEIAHTFHLGTKYSEALGAKFQG-----K 88

Query: 311 YVQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKI 368
              M  +GIG  R++ A I+      K +  P +++PF   +I  K+    V  +     
Sbjct: 89  PFYMCCFGIGVSRLLPATIDLLSVSDKALRLPRAISPFDAVIIVKKSLMSNVIVEMTSSS 148

Query: 369 YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG---SKFV--SDSKVEI---- 418
            +R  K G     DD  E   G +   A+ LG P  +++     + +   +  +E+    
Sbjct: 149 ASRYLKGGI--LLDDRIEMSPGKRIHEANRLGIPFIIVLANETERSLVTQEPVIEVFTTH 206

Query: 419 -KHRLTGIREDMSLEEVINYASHRF 442
            K      +  M+L+  +++   + 
Sbjct: 207 PKSADPVDQGSMTLDRFVSFVQSQL 231


>gi|229032054|ref|ZP_04188036.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1271]
 gi|228729246|gb|EEL80241.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1271]
          Length = 476

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|196039347|ref|ZP_03106653.1| histidine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196029974|gb|EDX68575.1| histidine--tRNA ligase [Bacillus cereus NVH0597-99]
          Length = 476

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 149/451 (33%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K+  TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKNMATGEQEEVALDVFASYVAEKL 475


>gi|206969773|ref|ZP_03230727.1| histidyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206735461|gb|EDZ52629.1| histidyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 423

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 147/438 (33%), Gaps = 48/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDL 206
           G  R R+F+     +              +    +  +  +GLK+I +   S G      
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNSLGDAASRQ 174

Query: 207 SHEFIVLA--DTGETQVFCSKDFMDFPIP--------SENTDFDDIISLNSIVEQWTAPY 256
           +H   ++A  +    +            P          N +        +      +  
Sbjct: 175 AHRDALIAHFEPRIDEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAV 234

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG--- 304
                     + D   E      RG++     +F        FG   +L     + G   
Sbjct: 235 YYEKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEADGFGAITTLSGGGRYNGLVQ 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G + +   R++ A+   +     I  P         ++ +    +  +D 
Sbjct: 295 EIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYVVALG---EKAKDH 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   TG
Sbjct: 345 AAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATG 404

Query: 425 IREDMSLEEVINYASHRF 442
            +E+++L+   +Y + + 
Sbjct: 405 EQEEVALDVFASYVAEKL 422


>gi|111115194|ref|YP_709812.1| glycyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|123047003|sp|Q0SNE2|SYG_BORAP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|110890468|gb|ABH01636.1| glycyl-tRNA synthetase [Borrelia afzelii PKo]
          Length = 445

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 152/478 (31%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G++ + PLG +  +N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGVWDYGPLGIELKENIKREWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEV------------MTDIFRSH 121
           +++W  SG  D +   M+   D   R     +    +                  +F++H
Sbjct: 70  SEIWKASGHIDGFSDSMVDCKDCKSRFRADFVDLSKNCPNCKVGNNFTSPRNFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEIYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVAKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +R +   +    S E   
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKIRPDRLRLKAHNSTELAH 244

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A +                               I  ++   +     +HN   +D   
Sbjct: 245 YAKSAFD----------------------------IEYEFPFGFQEIEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +K  +   +   H      +Y        + + G    V M      +        E  
Sbjct: 277 HSKFSNNSKVFEYHDLLTKERYVP---YVIETSAGLTRSVLMTLCDAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EVARRIYVELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V V    + D  V ++ R    ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKRIFINDLYSYIKTEILNYKE 441


>gi|323704147|ref|ZP_08115726.1| histidyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536213|gb|EGB25985.1| histidyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 417

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 145/437 (33%), Gaps = 47/437 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        +  +IRE     G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDVLPSEAYKWQYLENMIREICADFGFKEIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D++ +++   P         F  H      +P   Y I   +R E RP+ G
Sbjct: 61  VRKEMYTFNDKSGRSITLKPEGTSPAVRAFVEHNLYAETMPVKIYYITPVYRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R RE        F      +      + ++   +F++LGLK++ +   S         
Sbjct: 120 --RLREHHQFGIEMFGSNDALADAEVISVAMT---LFNKLGLKNLELNINSIGCPNCRRE 174

Query: 203 GGDLSHEF------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAP 255
                 EF       +  D  E         +D  + S      D   + N + +     
Sbjct: 175 YNKALKEFLGENIENLCDDCKERYKINPMRVLDCKVESCKRILKDAPLMLNYLCDDCKNH 234

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           + +      E  F+ +   K    RG++                        +      G
Sbjct: 235 FESLQSYLKEAGFNFIINPK--IVRGLDYYTK--------TAFEIISNDIGAQGTVCGGG 284

Query: 316 SYGIGAMRV----VAAV--------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            Y           V  V        +  + +  GI  P   AP +  L      ++  + 
Sbjct: 285 RYDGLVEECGGPSVPGVGFGLGLERLLLTLENSGIEIP---APKRPDLFICTIGNE-AKK 340

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  +L  +G  V  D+MG  + +Q   A+ L     +I+G   + + KV++K+  T
Sbjct: 341 YAFSMATKLRSLGISVEIDNMGRSLKAQMKYANKLNVRYTIILGEDELKNGKVKMKNMDT 400

Query: 424 GIREDMSLEEVINYASH 440
           G    + L+++ +  S 
Sbjct: 401 GEESAIELDKIYDKISE 417


>gi|228923155|ref|ZP_04086446.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836534|gb|EEM81884.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 476

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDTASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|229081668|ref|ZP_04214163.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
 gi|228701672|gb|EEL54163.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
          Length = 462

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 32  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 91

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 92  GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 148

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 149 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 202

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 203 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 260

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 261 PSITEYLNEDSAIYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 320

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 321 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYV 373

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 374 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 430

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 431 DKGIINLKDMATGEQEEVALDVFASYVAEKL 461


>gi|229141141|ref|ZP_04269682.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
 gi|228642304|gb|EEK98594.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
 gi|324328306|gb|ADY23566.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 476

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYEKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|229198530|ref|ZP_04325234.1| Histidyl-tRNA synthetase 2 [Bacillus cereus m1293]
 gi|228585033|gb|EEK43147.1| Histidyl-tRNA synthetase 2 [Bacillus cereus m1293]
          Length = 476

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYEKVQELLMMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|228910239|ref|ZP_04074057.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
 gi|228849403|gb|EEM94239.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
          Length = 476

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFNLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|68305000|gb|AAY90011.1| predicted glycyl-tRNA synthetase [uncultured bacterium BAC13K9BAC]
          Length = 446

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 91/483 (18%), Positives = 165/483 (34%), Gaps = 99/483 (20%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMS 70
           EI S  L  R G I Q +      +G+Y + PLG +  +N+ +   +    NR     + 
Sbjct: 3   EIVS--LCKRRGFIFQSNEIYGGLQGLYDYGPLGVELKNNLKSAWWKSIVYNRDDVEGLD 60

Query: 71  VPTLQSADLWVESGRYDSYGK---------------------------------EMLR-- 95
              L   D+   SG  D++                                    M +  
Sbjct: 61  TSILTHPDVLKYSGHEDTFTDPLVDCKSCGLRFREDQVPDQCKDEELTEPRDFNLMFKTN 120

Query: 96  ---LADRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMR 151
              + D +  A +   T +++  + F++ + S  R+LPF   QI   FR+E+ PR  + R
Sbjct: 121 VGPVTDDSSLAYLRPETAQQIYIN-FKNVLDSTSRSLPFGIAQIGKSFRNEITPRNFIFR 179

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F L  +               ++H+   K I  R       G    +  
Sbjct: 180 VREFEQMELEFFVLPGDD-------------EVWHQ---KWIKNRVSWWKEQGIPLEKLK 223

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +L  TG+     SK  +D                  I+ ++         + N   FD  
Sbjct: 224 LLTVTGDDLAHYSKSTVD------------------IMYKFPHGEEELEGIANRTDFDLG 265

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
              K       ++                  +  +       +     G  R V A+I  
Sbjct: 266 SHTKN----QKDLNITAQVKNNVDSNTRLAIQNENNDWVVPYVIEPSAGVDRGVLAIINE 321

Query: 332 SH-------DGKGIIWP--DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFW 381
           ++       D K  +      +AP K ++I +K +++        I + L +     V  
Sbjct: 322 AYTVENLDNDKKRTVLKLRKHLAPIKAAVIPLKRNNEELVKLTHTIKSTLQQYQIGRVVV 381

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++ G  IG  +   D +G PL + V    +    V ++ R T  ++ ++L+E+  Y    
Sbjct: 382 ENTGN-IGKSYRKHDEIGTPLCITVDFDSLEKKTVTVRDRDTMEQKTIALDEINKYFIDY 440

Query: 442 FSN 444
           FS+
Sbjct: 441 FSD 443


>gi|330683923|gb|EGG95691.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 420

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/438 (15%), Positives = 136/438 (31%), Gaps = 46/438 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP        +   + +        E+  P  +S +L+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSIKWRYIENKLDQLMEIYNYQEIRTPIFESTELFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSLTLRPEGTASVVRSYIEHKMQGNPNQPVKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  IG   S
Sbjct: 119 --GRYRQFNQFGVEAIGSENPSIDAEILAMV---MHIYQSFGLKHLKLVINS--IGDSDS 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +    A     +        D            +       ++        +D  NE  
Sbjct: 172 RKEYNKALVKHFEPVIDNFCQDCQSRLHTNPMRILDCKVDRDKEAVKNAPRITDFLNEDS 231

Query: 268 FDSLPENKRVSARGIEVGHIFYF----GTKY--SLPMSATFKGADGKDHYVQMGSYGIGA 321
                + K+     +E+ ++       G  Y             +       +   G   
Sbjct: 232 KAYYEQVKQHLDD-LEIPYVEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGG--- 287

Query: 322 MRVVAAVIESS--HDGKGIIWPDSVAP-----------------FKISLINIKAHDQVCR 362
                 ++E        GI +  S+                   F + ++ +    +   
Sbjct: 288 --RYNGLLELLDGPSQTGIGFALSIERLLLALEEEGIELDIKNDFDLFIVTMG---EKAD 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               K+   L K G     D +  +I  Q   AD L     +++G + + +++++IK+  
Sbjct: 343 RYAVKLLNELRKNGVKADKDYLNRKIKGQMKQADRLNANYTIVIGDQELENNQIDIKNME 402

Query: 423 TGIREDMSLEEVINYASH 440
           TG  E + L+++++Y   
Sbjct: 403 TGESESIQLDQIVDYFHK 420


>gi|91203209|emb|CAJ72848.1| similar to histidyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 436

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 152/437 (34%), Gaps = 32/437 (7%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR- 85
           ++G + +  +G    LP        +    R+E    G  E+  P  +   L+V S G  
Sbjct: 8   KSGYVFKAPRGTEDVLPGNWDLWKKLEEAGRQEFELCGYYEIRTPVFEDTRLFVRSIGEA 67

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            D   KEM   +D  D ++   P +   +   +  +          +Y I  +FR E RP
Sbjct: 68  TDIVEKEMYTFSDSEDSSITLRPENTAPVMRAYLEYELHKTKKFQKYYYIGPQFRKE-RP 126

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------ 199
           + G  R R+F      +              + V   RIF R+GLK   ++  S      
Sbjct: 127 QAG--RLRQFHQMGIEAVGANDPLLDVETIGVAV---RIFDRIGLKGYNVKINSIGCNEC 181

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
            P+  ++  + +   +    ++  S+     F I     +    ++              
Sbjct: 182 RPVFRNIIKDILCEREMALCELCQSRLHRNVFRILDCKNEKCKEVTHQLPPVNDYLCEKC 241

Query: 259 TSDVHNEKL----FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--A 305
               ++ +                 RG++     +F       G + ++     +    A
Sbjct: 242 RIHANSVREALVGIGIPYIADAHLVRGLDYYTKTVFEITHSSLGARDAICAGGRYDNLIA 301

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-ISLINIKAHDQVCRDA 364
           D     +    + IG    + A+    +  K  ++ +   P   + +++I   D+  +  
Sbjct: 302 DMGGPSIGAVGFAIGMEATILAMQNVLNKKKQSVYLEINEPAPTVYIVSI---DKEIKKH 358

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C  +   L K G     D  G    +Q  VA+ LG    +++G   +    V++K   TG
Sbjct: 359 CFYLLNLLRKSGISADLDYEGRSPKAQMRVANKLGVKYVLVLGPDELERGNVKVKIMETG 418

Query: 425 IREDMSLEEVINYASHR 441
               +  +E++N+   +
Sbjct: 419 EEVIVRQDEILNWFLQK 435


>gi|220673116|emb|CAX14534.1| novel protein similar to vertebrate threonyl-tRNA synthetase (Tars)
           [Danio rerio]
          Length = 145

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             D +D  V +    +G++  + A++  ++ GK   WP  ++P ++ L+ +    +   +
Sbjct: 1   DGDDRDRPVIIHRAILGSVERMIAILTENYAGK---WPLWLSPRQVMLVPVNPSLE---E 54

Query: 364 ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +++  R  + G     D D    +  +   A L  +   ++VG K    + V ++ R 
Sbjct: 55  YAKQVCKRFVEAGFMADADLDSSCLLNKKIRNAQLAQYNFILVVGEKERLSNSVNVRTRD 114

Query: 423 TGIREDMSLEEVINYA 438
             +  ++ + EV+   
Sbjct: 115 NKVHGELPVLEVMERL 130


>gi|315427010|dbj|BAJ48627.1| glycyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 481

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 35/362 (9%)

Query: 92  EMLR---LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            M+    L    D+  +   T + +  D  R +  S R LP    Q+   FR+E+ PR  
Sbjct: 142 NMMFGVSLGASGDEGYLRPETCQNIFIDFPRVYKISRRKLPLALAQVGKSFRNEISPRQS 201

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           ++R REF   +   F         + N+   +       +  K + M             
Sbjct: 202 LIRLREFTQAEIEVFFNP-----RTANEFAKA-----KTVADKELNMWVGER-------- 243

Query: 209 EFIVLADTGETQVFCSKDFMDFPIP--SENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              V   T E  V                  DF   + + S   ++          +  +
Sbjct: 244 ---VEKITCERAVESGLVSSWLVAYYLWLVQDFYFRLGIGSDRLRFRRLGDDEKAFYAAE 300

Query: 267 LFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            +D            +       +  G    +         DG+     +    +G  R 
Sbjct: 301 AWDLEVLTSTGWVELVACNNRTDYDLGGHQRVSGVDLRVTEDGESFLPHVFELSMGVDRS 360

Query: 325 VAAVIESSH-DGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + A++E  +    G   +    ++AP+ I++  +    ++     +++Y +L  +  D F
Sbjct: 361 LLALLEHGYVQENGRSVLRLHPALAPYTIAVFPLLDRPELT-QVAQQLYNKLQ-LDFDTF 418

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+ G  IG ++   D +G P  + V  + + D+ V ++ R T  +E +++E + +Y S 
Sbjct: 419 YDEKG-SIGRRYRRQDEIGTPFCITVDYQTLEDNTVTVRDRDTMKQERVNIEVLKSYISD 477

Query: 441 RF 442
           + 
Sbjct: 478 KL 479


>gi|315427003|dbj|BAJ48621.1| glycyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
 gi|315428091|dbj|BAJ49678.1| glycyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 482

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 35/362 (9%)

Query: 92  EMLR---LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            M+    L    D+  +   T + +  D  R +  S R LP    Q+   FR+E+ PR  
Sbjct: 143 NMMFGVSLGASGDEGYLRPETCQNIFIDFPRVYKISRRKLPLALAQVGKSFRNEISPRQS 202

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           ++R REF   +   F         + N+   +       +  K + M             
Sbjct: 203 LIRLREFTQAEIEVFFNP-----RTANEFAKA-----KTVADKELNMWVGER-------- 244

Query: 209 EFIVLADTGETQVFCSKDFMDFPIP--SENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              V   T E  V                  DF   + + S   ++          +  +
Sbjct: 245 ---VEKITCERAVESGLVSSWLVAYYLWLVQDFYFRLGIGSDRLRFRRLGDDEKAFYAAE 301

Query: 267 LFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            +D            +       +  G    +         DG+     +    +G  R 
Sbjct: 302 AWDLEVLTSTGWVELVACNNRTDYDLGGHQRVSGVDLRVTEDGESFLPHVFELSMGVDRS 361

Query: 325 VAAVIESSH-DGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + A++E  +    G   +    ++AP+ I++  +    ++     +++Y +L  +  D F
Sbjct: 362 LLALLEHGYVQENGRSVLRLHPALAPYTIAVFPLLDRPELT-QVAQQLYNKLQ-LDFDTF 419

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+ G  IG ++   D +G P  + V  + + D+ V ++ R T  +E +++E + +Y S 
Sbjct: 420 YDEKG-SIGRRYRRQDEIGTPFCITVDYQTLEDNTVTVRDRDTMKQERVNIEVLKSYISD 478

Query: 441 RF 442
           + 
Sbjct: 479 KL 480


>gi|284166966|ref|YP_003405245.1| glycyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284016621|gb|ADB62572.1| glycyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 593

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 94/565 (16%), Positives = 171/565 (30%), Gaps = 152/565 (26%)

Query: 24  KLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQS 76
           +L  R G   Q S       G Y++ P G     NV    R+      G +E+  PT+  
Sbjct: 22  ELAKRRGYFFQSSGAYGGVGGFYTFGPQGAALKGNVEDAWRDRFAVAEGNMEIDAPTIMP 81

Query: 77  ADLWVESGRYDSYGKEMLR--------------LADR---NDKAMIYGPTHEEVMT---- 115
             ++  SG  D +  +ML               + D     D   +  P  EEV+     
Sbjct: 82  EPVFEASGHLDGF-DDMLIECPECGESHRADHVVEDNTEYEDAESLPIPEVEEVIAEYEL 140

Query: 116 ------------------DIFRSHI---------------------------KSYRNLPF 130
                              +F ++I                            +   LPF
Sbjct: 141 VCPSCGAGLAGQAVDTFNLMFATNIGPGDSDPGYMRPETAQGIFVEFPRLKEYARNQLPF 200

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF----- 185
              QI   +R+E+ PR  ++R+REF   +   F + PE  +   + +    + ++     
Sbjct: 201 GVTQIGRAYRNEISPRRSIIRTREFTQAELEYF-VDPETDEPDLSTVADVEVTLYPASEQ 259

Query: 186 -HRLGLKSIPMRAES----------------------GPIGGDLSHEFIVLADTGETQVF 222
               G +      ++                        +G D+         +GE   +
Sbjct: 260 NEEDGEEIRTTIGDAVEEGIISSPWVAYFLGVAKPWYDAVGVDMDRFRFRQHLSGERAHY 319

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------ 276
            S  +        N       +     +       +       K +D     +R      
Sbjct: 320 ASDCWDAESEVDGNWIEMAGFAYRGDYDLSKHDEYSDDRFTIFKQYDEPKTVERATVDPD 379

Query: 277 VSARGIEVG--------------------------HIFYFGTKYSLP-----MSATFKGA 305
           +S  G E G                           I   G  + LP      +   +  
Sbjct: 380 MSYLGPEFGGDAQAVVQKLDDLAARDRAAFEGDTVEIDLEGETHELPVEKTRFAVEEQTE 439

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAH 357
            G+     +     G  R+V  V+  ++            +     VAP  + +  +  +
Sbjct: 440 AGEHITPHVVEPSFGVDRLVYTVLHHAYREDEVDGEERTYLDLEPEVAPTFVGVFPL-QN 498

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--K 415
           D+       +I A L +VG  V +DD G  IG ++   D +G P  V V  + V D    
Sbjct: 499 DEELEAQANEIVADLREVGLSVTYDDSGN-IGRRYRRQDEVGTPFCVTVDYETVEDEETT 557

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V ++ R T  ++ + ++++    S 
Sbjct: 558 VTVRERDTTDQKRLPVDDLAETLSA 582


>gi|30022479|ref|NP_834110.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|218233653|ref|YP_002369213.1| histidyl-tRNA synthetase [Bacillus cereus B4264]
 gi|229048113|ref|ZP_04193684.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH676]
 gi|229111876|ref|ZP_04241422.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|229129684|ref|ZP_04258652.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
 gi|229146975|ref|ZP_04275337.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|229152607|ref|ZP_04280796.1| Histidyl-tRNA synthetase 2 [Bacillus cereus m1550]
 gi|296504896|ref|YP_003666596.1| histidyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|39932340|sp|Q817X7|SYH2_BACCR RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|29898037|gb|AAP11311.1| Histidyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|218161610|gb|ACK61602.1| histidine--tRNA ligase [Bacillus cereus B4264]
 gi|228630868|gb|EEK87508.1| Histidyl-tRNA synthetase 2 [Bacillus cereus m1550]
 gi|228636472|gb|EEK92940.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|228653801|gb|EEL09671.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
 gi|228671632|gb|EEL26930.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|228723216|gb|EEL74590.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH676]
 gi|296325948|gb|ADH08876.1| histidyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 423

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|301055912|ref|YP_003794123.1| histidyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378081|gb|ADK06985.1| histidyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 476

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAYRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLTVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|228941572|ref|ZP_04104120.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974501|ref|ZP_04135068.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981095|ref|ZP_04141396.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228778636|gb|EEM26902.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228785218|gb|EEM33230.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818079|gb|EEM64156.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942185|gb|AEA18081.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 423

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMATAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|126700355|ref|YP_001089252.1| putative histidyl-tRNA synthetase [Clostridium difficile 630]
 gi|254976335|ref|ZP_05272807.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255093720|ref|ZP_05323198.1| putative histidyl-tRNA synthetase [Clostridium difficile CIP
           107932]
 gi|255101911|ref|ZP_05330888.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255307780|ref|ZP_05351951.1| putative histidyl-tRNA synthetase [Clostridium difficile ATCC
           43255]
 gi|255315472|ref|ZP_05357055.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255518135|ref|ZP_05385811.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255651251|ref|ZP_05398153.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|255656727|ref|ZP_05402136.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|260684315|ref|YP_003215600.1| putative histidyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260687974|ref|YP_003219108.1| putative histidyl-tRNA synthetase [Clostridium difficile R20291]
 gi|296452446|ref|ZP_06894147.1| histidine--tRNA ligase [Clostridium difficile NAP08]
 gi|296877795|ref|ZP_06901821.1| histidine--tRNA ligase [Clostridium difficile NAP07]
 gi|306521095|ref|ZP_07407442.1| histidyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|122973671|sp|Q183H5|SYH_CLOD6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|115251792|emb|CAJ69627.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Clostridium difficile]
 gi|260210478|emb|CBA64951.1| putative histidyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260213991|emb|CBE06103.1| putative histidyl-tRNA synthetase [Clostridium difficile R20291]
 gi|296258776|gb|EFH05670.1| histidine--tRNA ligase [Clostridium difficile NAP08]
 gi|296431246|gb|EFH17067.1| histidine--tRNA ligase [Clostridium difficile NAP07]
          Length = 420

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/441 (14%), Positives = 126/441 (28%), Gaps = 50/441 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G     P        V    RE     G  EM  P  +  +L+  S     D 
Sbjct: 1   MLTKAPRGTKDITPKEAYKWRYVENKFREICALYGYEEMVTPIFEHTELFKRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+ +   P     +   F  +       P   + +   FR E RP+ G
Sbjct: 61  VQKEMYSFKDKGDREITLKPEGTAGVVRAFIENKLYADTQPTKLFYVTPCFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS- 207
             R R+F      +              +    ++ F+ +GL  + +   S  +G  +  
Sbjct: 120 --RQRQFHQFGIEALGSDTPSMDAE---IIALAVQFFNEVGLNDLVVSINS--VGCPVCR 172

Query: 208 HEFIVLADTGETQVFC--SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            E+  L                 +    +     D          +     A       +
Sbjct: 173 KEYNALLKEYLDSKADILCDTCNERREKNPMRVIDCKNPTCKENIKDIPFIADHLCDDCK 232

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------------------- 306
             FD L E  +       +      G  Y    +      D                   
Sbjct: 233 SHFDKLQEYLKEMNINFVIDKTIVRGLDYYRKTAFEIISNDIGAQSTVCGGGRYDGLVEQ 292

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G    +    +G+G  R++  +     +G GI   +  +   I ++ I    +      
Sbjct: 293 LGGPKGISGIGFGLGIERLLLTL-----EGNGIEIENPQS-TDIFIVTIG---EEANTRS 343

Query: 366 EKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKHR 421
            K+   L +       D  +   +   +++            +++G   + +    +K+ 
Sbjct: 344 FKLLKDLRQNHISADKDHIERSVKAQFKYSD----KINSKFTIVIGDDELKNDTATLKNM 399

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  + L  ++     + 
Sbjct: 400 KTSEQTTVKLSTLVEELKQKL 420


>gi|297529263|ref|YP_003670538.1| histidyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297252515|gb|ADI25961.1| histidyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 426

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 146/443 (32%), Gaps = 52/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    V  I R   +R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDVLPGDTEKWQYVEHIARSLCSRYGYQEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H      N P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPNQPLKLYYSGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-----------R 196
           G  R R+F+     +   +          +    + I+  LGLK I +           R
Sbjct: 120 G--RFRQFVQFGVEALGSSDPAIDAE---VMALAMHIYEALGLKRIRLVINSLGDLDSRR 174

Query: 197 AESGPIGGDLSHEFIVLAD-------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           A    +    S     L         T   ++   K   D  + +      D ++ +S  
Sbjct: 175 AHREALVRHFSSRIHELCPDCQTRLHTNPLRILDCKKDRDHELMATAPSILDYLNEDSRA 234

Query: 250 EQWTAPY-------AATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D    +  D             E  G       G +Y+    
Sbjct: 235 YFEKVKQYLTNLGIPFVIDSRLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R++AA+     D +G+  P   +     ++ +    +
Sbjct: 291 -GLVQEIGGPETPGIG-FALSIERLLAAL-----DAEGVELPVE-SGLDCYVVAVG---E 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   ++   L + G  V  D +G ++ +Q   AD LG     I+G + +   +  +K
Sbjct: 340 RAKDEAVRLVYALRRFGLRVDQDYLGRKLKAQLKAADRLGASFVAIIGDEELERQEAAVK 399

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           H  +G + ++ L E+ ++   R 
Sbjct: 400 HMASGEQTNVPLGELAHFLHERI 422


>gi|229192615|ref|ZP_04319576.1| Histidyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
 gi|228590922|gb|EEK48780.1| Histidyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
          Length = 423

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AIYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|146321639|ref|YP_001201350.1| hypothetical protein SSU98_1792 [Streptococcus suis 98HAH33]
 gi|145692445|gb|ABP92950.1| SerS [Streptococcus suis 98HAH33]
 gi|292559062|gb|ADE32063.1| SerS [Streptococcus suis GZ1]
          Length = 467

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 208 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 267

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 268 ---FVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  TPE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 325 KVEMVKF-ATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 383

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 384 PAQNAYREISSCSNTEDFQARRAQIRYRD 412


>gi|229071912|ref|ZP_04205123.1| Histidyl-tRNA synthetase 2 [Bacillus cereus F65185]
 gi|228711208|gb|EEL63172.1| Histidyl-tRNA synthetase 2 [Bacillus cereus F65185]
          Length = 423

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEQL 422


>gi|295706712|ref|YP_003599787.1| histidyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804371|gb|ADF41437.1| histidyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 422

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 145/443 (32%), Gaps = 52/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    V    RE        E+  P  +  +L++       D 
Sbjct: 1   MSVQIPRGTQDILPGKVEYWQFVEQRAREICRAFNYQEIRTPMFEHTELFLRGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR D+++   P     +      + +      P   + I   FR E RP+ 
Sbjct: 61  VQKEMYTFKDRGDRSLTLRPEGTAAVGRSFVSNKMFGNPTQPTKLFYIGPMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------- 199
           G  R R+F+     +  +           +    +  +  LGLK + +   S        
Sbjct: 120 G--RFRQFVQFGVEALGVNDPAIDAE---VLALLMSFYQSLGLKKLKLVVNSLGDTESRQ 174

Query: 200 ----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                      P  G+   +     +    ++   K   D  + +      D ++  S  
Sbjct: 175 AHRQALIDHFAPRIGEFCSDCQSRLEKNPLRILDCKKDRDHELMATAPSILDYLNDYSRE 234

Query: 250 EQWTAPYA-------ATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D    +  D             E  G I     G +Y+    
Sbjct: 235 YFEKVQQYLTDLDIDYVVDPTLVRGLDYYNHTAFELMSEAEGFGAITTLCGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R+++A+     + +GI  P       +    +   D+
Sbjct: 291 -GLIQEIGGPETPGIG-FALSIERLLSAL-----EAEGIELPVE---TGVDCYVVTMGDE 340

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++    I   L + G     D   +++ +QF  AD +     V++G   ++   V +K
Sbjct: 341 -AKEKSVSIVNTLRRAGFVADKDYQDKKMKAQFKAADRVQAKFVVVLGEDELAKQVVNVK 399

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           +  +G ++++S++++++Y   + 
Sbjct: 400 NMESGEQQEVSIDQLVSYLQKQV 422


>gi|228917037|ref|ZP_04080597.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228842644|gb|EEM87732.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 476

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRSMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLAVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|312794171|ref|YP_004027094.1| histidyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181311|gb|ADQ41481.1| histidyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 421

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 133/439 (30%), Gaps = 49/439 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE     G  E+  PT +  +L+        D   K
Sbjct: 4   QAPKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTELFQRGVGETTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P        +F  H  + R +P  FY I   FR E     G  R
Sbjct: 64  EMYTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYE--NTQG-GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHE 209
            REF      +F  +   +      +       F  +GL +I +   S   P+      +
Sbjct: 121 FREFHQFGIENFGSSSPVTDAE---VISLAYNFFTSIGLDNITVNINSIGCPVCRKEYVK 177

Query: 210 FIVLADTGETQVFCSKDFM----------DFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            +    +  +Q  C               D           D       +      +  +
Sbjct: 178 NLKEYFSANSQKLCHTCHQRLDKNPMRILDCKEEGCKLIAKDAPKPIDYLCDDCKSHFES 237

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------GKDHYVQ 313
              + +        +     RG++        TK    + A     D      G+   + 
Sbjct: 238 VKTYLDSAMVVYKVDP-FIVRGLDYY------TKTVFEIVAPVSDKDLAICGGGRYDNLI 290

Query: 314 MGSYGIGA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
               G           +  +  ++E +      + P   A  ++  + +    +      
Sbjct: 291 EQIGGNSIPGIGFAIGVERLLMLLEQNG-----LLP---ARPQVPQVFVATVGENSLKEA 342

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +I   L   G     ++MG  + SQ   AD +G    +I+G   ++    +I++  T  
Sbjct: 343 FEIARMLRFEGISTIIEEMGRSLKSQMKYADKIGCQFSIIIGDDEIAKGVCKIRNMRTSS 402

Query: 426 REDMSLEEVINYASHRFSN 444
              + +E V  Y   +   
Sbjct: 403 EGIVEIENVCQYLKEKLQK 421


>gi|262189799|ref|ZP_06048144.1| prolyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|262034317|gb|EEY52712.1| prolyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
          Length = 91

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 50/87 (57%)

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   
Sbjct: 5   KSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHF 64

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R  G +E +++E +I++   + +
Sbjct: 65  EYKNRRQGEKEAVAMESIIDFIQAKLA 91


>gi|42783532|ref|NP_980779.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206975990|ref|ZP_03236900.1| histidyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217961893|ref|YP_002340463.1| histidyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222097847|ref|YP_002531904.1| histidyl-tRNA synthetase [Bacillus cereus Q1]
 gi|54039678|sp|P62370|SYH2_BACC1 RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|42739461|gb|AAS43387.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206745742|gb|EDZ57139.1| histidyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217063931|gb|ACJ78181.1| histidyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221241905|gb|ACM14615.1| histidyl-tRNA synthetase [Bacillus cereus Q1]
          Length = 423

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYEKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|228954688|ref|ZP_04116711.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228805015|gb|EEM51611.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 423

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 147/443 (33%), Gaps = 58/443 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDL 206
           G  R R+F+     +              +    +  +  +GLK+I +   S G      
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNSLGDAASRQ 174

Query: 207 SH-------------EFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +H             EF        +    ++   K   +  +        + ++ +S +
Sbjct: 175 AHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAI 234

Query: 250 EQW-------TAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D +  +  D             E  G I     G +Y+    
Sbjct: 235 YYDKVQELLTMMNVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R++ A+   +     I  P         ++ +    +
Sbjct: 291 -GLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYVVALG---E 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K
Sbjct: 340 KAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLK 399

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
              TG +E+++L+   +Y + + 
Sbjct: 400 DMATGEQEEVALDVFASYVAEKL 422


>gi|218899572|ref|YP_002447983.1| histidyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228902931|ref|ZP_04067072.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
 gi|228960677|ref|ZP_04122321.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967479|ref|ZP_04128507.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545625|gb|ACK98019.1| histidyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228792194|gb|EEM39768.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228798983|gb|EEM45956.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228856715|gb|EEN01234.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
          Length = 423

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPLE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFNLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|152976821|ref|YP_001376338.1| histidyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189082285|sp|A7GT85|SYH_BACCN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|152025573|gb|ABS23343.1| histidyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 423

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 144/443 (32%), Gaps = 58/443 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR D+++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYTFQDRGDRSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------- 199
           G  R R+F+     +              +    +  +  +GLK+I +   S        
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNSLGDPASRQ 174

Query: 200 ----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                      P  G+   +     +    ++   K   D  + +      D ++  S  
Sbjct: 175 AHREALIAHFKPRIGEFCSDCQSRLEKNPLRILDCKRDRDHELMNTAPSITDYLNEESTA 234

Query: 250 EQWTAPY-------AATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D +  +  D             E  G I     G +Y+    
Sbjct: 235 YYEKVQELLTMMGVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R++ A+   +     I  P         ++ +     
Sbjct: 291 -GLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIENT-IDCYVVALGDK-- 340

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K
Sbjct: 341 -AKDHAAKVAFDLRKSGLSVEKDYLNRKMKAQFKSADRLNAKYVAVLGEDELDKGVINLK 399

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
              TG +E+++L+   +Y + + 
Sbjct: 400 DMATGEQEEVALDVFASYIAEKL 422


>gi|239637564|ref|ZP_04678536.1| histidyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596782|gb|EEQ79307.1| histidyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 420

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/442 (14%), Positives = 136/442 (30%), Gaps = 54/442 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP        +   + +        E+  P  +S +L+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSIKWRYIENKLDQLMEIYNYQEIRTPIFESTELFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSLTLRPEGTAGVVRSYIEHKMQGNPNQPVKLYYNSPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  IG   S
Sbjct: 119 --GRYRQFNQFGVEAIGSENPSIDAEVLAMV---MHIYQSFGLKHLKLVINS--IGDSDS 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +D       +            +      A  +       
Sbjct: 172 RK-----EYNEALVKHFEPVIDDFCQDCQSRLHTNPMRILDCKVDRDKEAVKNAPRITDF 226

Query: 268 FDSLPENKRVSARG----IEVGHIFYF----GTKY--SLPMSATFKGADGKDHYVQMGSY 317
            +   +      +     +E+ ++       G  Y             +       +   
Sbjct: 227 LNEDSKAYYEQVKKHLDDLEIPYVEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGG 286

Query: 318 GIGAMRVVAAVIESS--HDGKGIIWPDSVAP-----------------FKISLINIKAHD 358
           G         ++E        GI +  S+                   F + ++ +    
Sbjct: 287 G-----RYNGLLELLDGPSQTGIGFALSIERLLLALEEEGIELDIKNDFDLFIVTMG--- 338

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       K+   L K G     D +  +I  Q   AD L     +++G + + +++++I
Sbjct: 339 EQADRYAVKLLNELRKNGVKADKDYLNRKIKGQMKQADRLNANYTIVIGDQELENNQIDI 398

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           K+  TG  E + L+++++Y   
Sbjct: 399 KNMETGESESIQLDQIVDYFHK 420


>gi|289193291|ref|YP_003459232.1| glycyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288939741|gb|ADC70496.1| glycyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 577

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 83/550 (15%), Positives = 161/550 (29%), Gaps = 144/550 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESG----------- 84
            G   + PLG    +N+ +  RE+   + G  E+  PT+   ++   SG           
Sbjct: 30  AGFVDYGPLGCLLKNNIISKFREQYIVKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 89

Query: 85  --------RYDSYGKE----------------------------------------MLRL 96
                   R D   +E                                        M   
Sbjct: 90  CKNCLESFRADHLIEEFVDVDTEGKTLKELEELIRKHNIRCPKCGGELGEVKKFNLMFVT 149

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
           +      +     P   + +   FR   + +RN LPF   QI   +R+E+ PR GV+R R
Sbjct: 150 SIGPGGKRTGYMRPETAQGIFIQFRRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLR 209

Query: 154 EFLMKDAYSF-------DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG------ 200
           EF   +   F           +  K     +  +  ++   L      ++   G      
Sbjct: 210 EFTQAEIEYFVHPERKEHEKFDLVKDEVVPLLPAERQMDENLSEDEKVIKISIGEAVEKG 269

Query: 201 -------------------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               IG D            E   +    +            + 
Sbjct: 270 IIRHQTIAYFIALTKGFLEAIGIDKDKIRFRQHLPNEMAHYAIDCWDAEIYTERFGWIEC 329

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE---VGHIFYFGTK----- 293
           +   +       +  A +    +  +    P+        +    VG IF   TK     
Sbjct: 330 VGIADRTDYDLRSHSAHSGVELSVFVEFDEPKEIETYEINLNYKVVGRIFKKDTKAIEAY 389

Query: 294 -----------YSLPMSAT---FKGADGKD---------------------HYVQMGSYG 318
                      +   +          DGK+                         +    
Sbjct: 390 INNLDERALEEFVKTLEKDGKITINIDGKEFEILKDYVEIKKVKKVIKGEKVIPHVIEPS 449

Query: 319 IGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            G  R+   ++E S+  +     +    S+AP K  ++ +   + + +   ++I   L +
Sbjct: 450 YGIDRITYCLLEHSYREEEDRVYLDLKPSIAPIKAYVLPLVNKEDMPK-IAKEIEKMLRE 508

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G    +DD G  IG ++  AD +G P  + V  + + D  V ++ R T  +  + ++E+
Sbjct: 509 NGIIAEYDDSGA-IGRRYMRADEIGVPFCITVDGQTLKDKTVTVRERNTREQVRVKIDEL 567

Query: 435 INYASHRFSN 444
           ++Y   +  +
Sbjct: 568 VDYLKEKLKD 577


>gi|146319436|ref|YP_001199148.1| seryl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145690242|gb|ABP90748.1| Seryl-tRNA synthetase [Streptococcus suis 05ZYH33]
          Length = 428

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 12/198 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 208 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 267

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 268 ---FVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  TPE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 325 KVEMVKF-ATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 383

Query: 213 LADTGETQVFCSKDFMDF 230
            A     ++    +  DF
Sbjct: 384 PAQNAYREISSCSNTEDF 401


>gi|223934048|ref|ZP_03626000.1| seryl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897275|gb|EEF63684.1| seryl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 424

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  TPE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-ATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNAYREISSCSNTEDFQARRAQIRYRD 369


>gi|296422831|ref|XP_002840962.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637189|emb|CAZ85153.1| unnamed protein product [Tuber melanosporum]
          Length = 236

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 8/128 (6%)

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWD 382
               D KG++ P  VA +++ ++      +   +         E I   LS+ G  V  D
Sbjct: 1   MIHGDNKGLVLPPRVAQYQVVIVPCGLTAKTTEEERKRLLGGVEDIATTLSQAGIRVKAD 60

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++  G K +   +V    R TG++  + L  +       
Sbjct: 61  TRETYSPGYKFNDWELKGVPVRLEFGPKDMEKKQVLSARRDTGVKVGIPLSGLAEKVQTL 120

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 121 LDTIQKDL 128


>gi|253752458|ref|YP_003025599.1| seryl-tRNA synthetase [Streptococcus suis SC84]
 gi|253754284|ref|YP_003027425.1| seryl-tRNA synthetase [Streptococcus suis P1/7]
 gi|56684577|gb|AAW21989.1| SerS [Streptococcus suis]
 gi|251816747|emb|CAZ52389.1| seryl-tRNA synthetase [Streptococcus suis SC84]
 gi|251820530|emb|CAR47285.1| seryl-tRNA synthetase [Streptococcus suis P1/7]
 gi|319758862|gb|ADV70804.1| hypothetical protein SSUJS14_1746 [Streptococcus suis JS14]
          Length = 424

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  TPE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-ATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNAYREISSCSNTEDFQARRAQIRYRD 369


>gi|65321770|ref|ZP_00394729.1| COG0124: Histidyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|167636503|ref|ZP_02394800.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170688654|ref|ZP_02879859.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|177653972|ref|ZP_02936013.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190566891|ref|ZP_03019807.1| histidyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196034468|ref|ZP_03101877.1| histidyl-tRNA synthetase [Bacillus cereus W]
 gi|227817182|ref|YP_002817191.1| histidyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228929448|ref|ZP_04092469.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935724|ref|ZP_04098537.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948117|ref|ZP_04110401.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093474|ref|ZP_04224577.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
 gi|229123944|ref|ZP_04253136.1| Histidyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|229604899|ref|YP_002868690.1| histidine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684159|ref|ZP_05148019.1| histidyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254736506|ref|ZP_05194212.1| histidyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741544|ref|ZP_05199231.1| histidyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751357|ref|ZP_05203394.1| histidyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757689|ref|ZP_05209716.1| histidyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|167528096|gb|EDR90893.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170667340|gb|EDT18098.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081027|gb|EDT66105.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190561882|gb|EDV15851.1| histidyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|195993010|gb|EDX56969.1| histidyl-tRNA synthetase [Bacillus cereus W]
 gi|227006448|gb|ACP16191.1| histidine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228659246|gb|EEL14894.1| Histidyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|228689945|gb|EEL43749.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
 gi|228811475|gb|EEM57812.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823962|gb|EEM69781.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830236|gb|EEM75852.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229269307|gb|ACQ50944.1| histidine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 476

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLAVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|312877307|ref|ZP_07737274.1| histidyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795940|gb|EFR12302.1| histidyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 421

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 137/438 (31%), Gaps = 47/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE     G  E+  PT +  +L+        D   K
Sbjct: 4   QAPKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTELFQRGVGETTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P        +F  H  + R +P  FY I   FR E     G  R
Sbjct: 64  EMYTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYE--NTQG-GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF      +F  +   +      +       F  +GL +I +   S  IG     +  
Sbjct: 121 FREFHQFGIENFGSSSPVTDAE---VISLAYNFFTSIGLDNITVNINS--IGCPACRKEY 175

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V       + F +          +  D + +  L+   E      A  +    + L D  
Sbjct: 176 V---KNLKEYFSANSQKLCHTCHQRLDKNPMRILDCKEEGCKLI-AKDAPKPIDYLCDDC 231

Query: 272 PENKRVSARGIEVGHIFYF-------GTKY----SLPMSATFKGAD------GKDHYVQM 314
             +       ++   + Y        G  Y       + A     D      G+   +  
Sbjct: 232 KSHFESVKTYLDSAMVVYKVDPFIVRGLDYYTKTVFEIVAPVSDKDLAICGGGRYDNLIE 291

Query: 315 GSYGIGA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
              G           +  +  ++E +      + P   A  ++  + +    +       
Sbjct: 292 QIGGNSIPGIGFAIGVERLLMLLEQNG-----LLP---ARPQVPQVFVATVGENSLKEAF 343

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I   L   G     ++MG  + SQ   AD +G    +I+G   ++    +I++  T   
Sbjct: 344 EIARMLRFEGISTIIEEMGRSLKSQMKYADKIGCQFSIIIGDDEIAKGVCKIRNMRTSSE 403

Query: 427 EDMSLEEVINYASHRFSN 444
             + +E V  Y   +   
Sbjct: 404 GIVEIENVCQYLKEKLQK 421


>gi|144227446|gb|AAZ44148.2| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 455

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 120/357 (33%), Gaps = 63/357 (17%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +     +   P   + +   F++ +++ +N LP    Q+   FR+E+ P   + R+RE
Sbjct: 155 IIEDEKTLLYLRPETAQGIFINFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTRE 214

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F+  +   F L P+ S++ +            +LG     +R                  
Sbjct: 215 FVQLELEIF-LKPDQSENFFQNEIEKIKNFLKKLGFAKNSIRLN---------------- 257

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  +  K+ +     +      +       +   +         H+EK  + L   
Sbjct: 258 -------YHKKEKLAHYAKATADFEYNFNFGWGELIGISNRGDYDLKNHSEKSGEKLEF- 309

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH- 333
                                         A GK     +    +G  R++ AV+E    
Sbjct: 310 ---------------------------VDSATGKKFLPHIIEPSMGLDRLMLAVLEECFC 342

Query: 334 -----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +   +  P  ++P+K++++ +           EKI+  L            G  I
Sbjct: 343 FDSVKNRYFLKLPFILSPYKVAVLPLLKK---FNFLAEKIWNELISQKISATLVTSG-SI 398

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G ++   D++G    + +  K V +S V ++ R T  ++ + ++E+  +    F N 
Sbjct: 399 GKRYYHQDVIGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVNE 455


>gi|47566592|ref|ZP_00237414.1| histidyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47556622|gb|EAL14954.1| histidyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 423

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSMDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|16079810|ref|NP_390634.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310694|ref|ZP_03592541.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315018|ref|ZP_03596823.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319939|ref|ZP_03601233.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324220|ref|ZP_03605514.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|3122900|sp|O32039|SYH_BACSU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2635220|emb|CAB14715.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 424

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 146/439 (33%), Gaps = 48/439 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +   +G    LP        V  I+R+        E+  P  +  +L+        D 
Sbjct: 1   MGYNIPRGTQDILPGESDRWQFVEQIMRDTCRTYQYKEIRTPIFEHTELFARGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P         F  + + +    P   Y +   FR E RP+ 
Sbjct: 61  VQKEMYTFEDRKGRSLTLRPEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYE-RPQT 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP-MRAESGPIGGDL 206
           G  R R+F      +              +    + I+ + GL+++  +    G      
Sbjct: 120 G--RYRQFYQFGIEAIGSKDPAIDAE---VMALAMSIYEKAGLENVKLVINSLGDQDSRK 174

Query: 207 SH-------------EFIVLAD----TGETQVFCSKDFMDFPI-PSENTDFDDIISLNSI 248
           S+             EF         T   ++   K   D  +  S  +    +   ++ 
Sbjct: 175 SYREALVKHFEPRIEEFCSDCQSRLHTNPLRILDCKKDRDHELMKSAPSILTYLNEESAA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKG--- 304
             +    Y     +  E   + +      +    E+  +   FG   +L     + G   
Sbjct: 235 YFEKVKQYLNDLGISYEIDPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVE 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHD---GKGIIWPDSVAPFKISLINIKAHDQVC 361
             G      +G + +   R++AA+     +    KGI            ++ +    +  
Sbjct: 295 QIGGPEAPGIG-FAMSIERLLAAIDAEKRELPVDKGI---------DCYIVTLG---EKA 341

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D    +  +L + G     D   +++  QF  AD L      I+G   ++ +K+ +K  
Sbjct: 342 KDYSVSLVYKLREAGISSEIDYENKKMKGQFKTADRLKARFIAILGEDELAQNKINVKDA 401

Query: 422 LTGIREDMSLEEVINYASH 440
            TG + +++L+E I+    
Sbjct: 402 QTGEQIEVALDEFIHVMKA 420


>gi|144575262|gb|AAZ53435.2| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 455

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 120/357 (33%), Gaps = 63/357 (17%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +     +   P   + +   F++ +++ +N LP    Q+   FR+E+ P   + R+RE
Sbjct: 155 IIEDEKTLLYLRPETAQGIFINFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTRE 214

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F+  +   F L P+ S++ +            +LG     +R                  
Sbjct: 215 FVQLELEIF-LKPDQSENFFQNEIEKIKNFLKKLGFAKNSIRLN---------------- 257

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  +  K+ +     +      +       +   +         H+EK  + L   
Sbjct: 258 -------YHKKEKLAHYAKATVDFEYNFNFGWGELIGISNRGDYDLKNHSEKSGEKLEF- 309

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH- 333
                                         A GK     +    +G  R++ AV+E    
Sbjct: 310 ---------------------------VDSATGKKFLPHIIEPSMGLDRLMLAVLEECFC 342

Query: 334 -----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +   +  P  ++P+K++++ +           EKI+  L            G  I
Sbjct: 343 FDSVKNRYFLKLPFILSPYKVAVLPLLKK---FNFLAEKIWNELISQKISATLVTSG-SI 398

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G ++   D++G    + +  K V +S V ++ R T  ++ + ++E+  +    F N 
Sbjct: 399 GKRYYHQDVIGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVNE 455


>gi|56421108|ref|YP_148426.1| histidyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81675744|sp|Q5KWS8|SYH_GEOKA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56380950|dbj|BAD76858.1| histidyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 426

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 146/443 (32%), Gaps = 52/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    V  I R   +R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDVLPGDSEKWQYVEHIARSLCSRYGYQEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H      N P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPNQPLKLYYSGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-----------R 196
           G  R R+F+     +   +          +    + I+  LGLK I +           R
Sbjct: 120 G--RFRQFVQFGVEALGSSDPAIDAE---VMALAMHIYEALGLKRIRLVINSLGDLDSRR 174

Query: 197 AESGPIGGDLSHEFIVLAD-------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           A    +    S+    L         T   ++   K   D  + +      D ++  S  
Sbjct: 175 AHREALVRHFSNRIHELCPDCQTRLHTNPLRILDCKKDRDHELMATAPSILDYLNDESRA 234

Query: 250 EQWTAPY-------AATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D    +  D             E  G       G +Y+    
Sbjct: 235 YFEKVKQYLTALGIPFVIDARLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R++AA+     D +G+  P   +     ++ +    +
Sbjct: 291 -GLVQEIGGPETPGIG-FALSIERLLAAL-----DAEGVELPVE-SGLDCYVVAVG---E 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   ++   L + G  V  D +G ++ +Q   AD LG     I+G + +   +  +K
Sbjct: 340 RAKDEAVRLVYALRRSGLRVDQDYLGRKLKAQLKAADRLGASFVAIIGDEELERQEAAVK 399

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           H  +G + ++ L E+ ++   R 
Sbjct: 400 HMASGEQTNVPLGELAHFLHERI 422


>gi|94985816|ref|YP_605180.1| glycyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|122986565|sp|Q1IXM3|SYG_DEIGD RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|94556097|gb|ABF46011.1| glycyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 504

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 120/391 (30%), Gaps = 70/391 (17%)

Query: 83  SGRYDSYGK----EMLRLADR-----NDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTF 132
           SG    + +     M+           D      P   + +   F++ + S  R LPF  
Sbjct: 154 SGEVGDWTEPRPFNMMFKTSIGPVADEDSFGYLRPETAQGIFTNFKNVVDSTSRRLPFGI 213

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGL 190
            QI   FR+E+ PR  + R RE    +   F    T E                      
Sbjct: 214 AQIGKAFRNEITPRNFIFRVRELEQMEIEFFCTPGTDEAWHQ------------------ 255

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                            H         E Q    +      +P E+       + + +  
Sbjct: 256 -----------------HWLEARLAWWEAQGIPREKIQILDVPKEDLAHYSKRTYDLMYN 298

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKD 309
             T  Y     + N   FD     K  +  GI+          +      T    +  K 
Sbjct: 299 YPTLGYEEIEGIANRTDFDLGSHTKAQAELGIQA----RVEENFDSVAKLTIPHPETNKP 354

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHD----GKG-----IIWPDSVAPFKISLINIKAHDQV 360
               +     G  R + AV+  ++       G     +     +AP K+++I +  + + 
Sbjct: 355 VVPFVIEPSAGVDRAMLAVLAEAYTKETLENGSERIVLKLKPHLAPIKVAVIPLARNREE 414

Query: 361 CRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-------GSKFVS 412
                + I A+L  +G   V ++D G  IG  +   D +G P  V V       G     
Sbjct: 415 ITSVAKAIKAKLQSLGLGRVLYEDSGN-IGKAYRRHDEVGTPYCVTVDFETVGKGEDPAL 473

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              V ++ R T  +E + + E+ N+   R  
Sbjct: 474 TDTVTVRDRDTLGQERVRISELANWLQARLR 504


>gi|118479561|ref|YP_896712.1| histidyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|196044856|ref|ZP_03112090.1| histidyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|225866385|ref|YP_002751763.1| histidyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|229186643|ref|ZP_04313804.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
 gi|118418786|gb|ABK87205.1| histidyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|196024344|gb|EDX63017.1| histidyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|225788488|gb|ACO28705.1| histidine--tRNA ligase [Bacillus cereus 03BB102]
 gi|228596902|gb|EEK54561.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
          Length = 476

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYEKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLAVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|16081356|ref|NP_393684.1| glycyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|10639350|emb|CAC11352.1| glycyl-tRNA synthetase related [Thermoplasma acidophilum]
          Length = 476

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 163/483 (33%), Gaps = 96/483 (19%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI+  S G Y + PLG    DN+ A  + E  R GAI +  P +  AD++  SG  + + 
Sbjct: 21  MIYGGSSGFYDYGPLGTLLKDNIIAAWKREYAREGAIFLDTPVISPADVFRASGHLEKFS 80

Query: 91  K------------------------EMLRLADRN----DKAMIYGPTHEE------VMTD 116
                                    E+ +  D      +K  +  P   E          
Sbjct: 81  DIAVKCSKCGTPYKFESLIKSLGINEIAKTVDEAAAILEKYDVKCPKCGEKLKNPYDFNL 140

Query: 117 IFR------------------SHIKSYRN----LPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +FR                  +    Y      +P    Q+   FR+E+ PR  ++R RE
Sbjct: 141 MFRVGSNDLYLRPETAQGIFINFKNLYNYARNSMPIIVCQVGKGFRNEISPRQALIRMRE 200

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F +  +      + + ++ LR    L    +     SG IG  +        
Sbjct: 201 FSQAEVEVFYIENDDFPIPDSSVELNMLRNTGDLLKMKVSDALRSGIIGNRV-------- 252

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  F +K +          D       +       +      +       D     
Sbjct: 253 ----MAYFLNKTYEILLKLGFQPDHIRAREHDPGERAHYSSETWDFEY--LLDGDWTEIV 306

Query: 275 KRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   ++G    F G  + +         DG+   V   SYG+   R++  +++SS+
Sbjct: 307 GVSDRGTYDLGRHQQFSGENFQI---------DGRTPKVVEPSYGLD--RILLTIMDSSY 355

Query: 334 D--GKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                G   +     ++P  +++  ++  D       + ++ ++  +   +F+DD G  I
Sbjct: 356 YRRENGYKVLRLDPHISPIHMAIFPLQKRDD-LDKIAKDLFEKMKNIDPFIFYDDSGN-I 413

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY-------ASHR 441
           G ++A  D +G P  V V  +   D  V I+ R +  +  + + +++          S  
Sbjct: 414 GRRYARQDEIGTPFCVTVDYQTKDDETVTIRERDSTSQVRVKISDLLERTRSFPDSLSAL 473

Query: 442 FSN 444
           FSN
Sbjct: 474 FSN 476


>gi|71893413|ref|YP_278859.1| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 456

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 120/357 (33%), Gaps = 63/357 (17%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +     +   P   + +   F++ +++ +N LP    Q+   FR+E+ P   + R+RE
Sbjct: 156 IIEDEKTLLYLRPETAQGIFINFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTRE 215

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F+  +   F L P+ S++ +            +LG     +R                  
Sbjct: 216 FVQLELEIF-LKPDQSENFFQNEIEKIKNFLKKLGFAKNSIRLN---------------- 258

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  +  K+ +     +      +       +   +         H+EK  + L   
Sbjct: 259 -------YHKKEKLAHYAKATADFEYNFNFGWGELIGISNRGDYDLKNHSEKSGEKLEF- 310

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH- 333
                                         A GK     +    +G  R++ AV+E    
Sbjct: 311 ---------------------------VDSATGKKFLPHIIEPSMGLDRLMLAVLEECFC 343

Query: 334 -----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +   +  P  ++P+K++++ +           EKI+  L            G  I
Sbjct: 344 FDSVKNRYFLKLPFILSPYKVAVLPLLKK---FNFLAEKIWNELISQKISATLVTSG-SI 399

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G ++   D++G    + +  K V +S V ++ R T  ++ + ++E+  +    F N 
Sbjct: 400 GKRYYHQDVIGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVNE 456


>gi|253756218|ref|YP_003029358.1| seryl-tRNA synthetase [Streptococcus suis BM407]
 gi|251818682|emb|CAZ56517.1| seryl-tRNA synthetase [Streptococcus suis BM407]
          Length = 424

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  TPE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-ATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGYSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNAYREISSCSNTEDFQARRAQIRYRD 369


>gi|314936256|ref|ZP_07843603.1| histidine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654875|gb|EFS18620.1| histidine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 425

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 141/450 (31%), Gaps = 60/450 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  +G    LP        +   + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPQESAKWRYIENKLDELMKLYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ D+++   P   E    + RS+I++        P   Y     FR E +
Sbjct: 60  VQKEMYTFKDKGDRSITLRP---EGTAAVVRSYIENKMQGEPNQPIKLYYNGPMFRYERK 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F      +              M    + I+   GLK + +   S  IG 
Sbjct: 117 QK---GRYRQFNQFGVEAIGAENPSIDAEVLAMV---MHIYESFGLKHLKLVINS--IGD 168

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S +     +  E  +   +  +D       +            +      A       
Sbjct: 169 QASRK-----EYNEALMKHFEPVIDTFCNDCQSRLHTNPMRILDCKIDRDKEAVKHAPRI 223

Query: 265 EKLFD----SLPENKRVSARGIEVGHIFYF----GTKY--SLPMSATFKGADGKDHYVQM 314
               +    +  E  +     +++ ++       G  Y             +       +
Sbjct: 224 TDYLNDESKAYYEAVKHHLDQLDINYVEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTL 283

Query: 315 GSYGIGAMRVVAAVIESSHDGK--GIIWPDSVAP-----------------FKISLINIK 355
              G         ++E     K  GI +  S+                   F + ++ + 
Sbjct: 284 CGGG-----RYNGLLELLDGPKQTGIGFALSIERLLLALEEEDIELNVDEDFDLFVVTMG 338

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +       K+   L K G     D +  +I  Q   AD L     +++G + ++++K
Sbjct: 339 KKAE---QYSVKLLNDLRKHGVKADKDYLNRKIKGQMKQADRLNAKYTIVIGDQELNNNK 395

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +++K   TG  + + L+EV+++ +    N 
Sbjct: 396 IDVKEMSTGETKTIQLDEVVSFFNKEKENK 425


>gi|119719206|ref|YP_919701.1| glycyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|119524326|gb|ABL77698.1| glycyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 497

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 121/358 (33%), Gaps = 19/358 (5%)

Query: 93  ML--RLADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           M   ++  R        P T + + T+           LPF   QI   FR+E+ PR  +
Sbjct: 150 MFDTQVGPRKSMTAYLRPETAQLIFTNFKNVVFTMGATLPFGIAQIGKAFRNEISPRNFL 209

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R REF   +   F + PE            Y +    L +  +    +   +    S +
Sbjct: 210 FRLREFTQMEIEYF-VNPEKLNEC------PYFKEVEELRVNFLSAEEQERGVSEAKSIK 262

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +TG  +      ++   +    +       L       T          + + F 
Sbjct: 263 LGEAVETGVIKNAWHAYWIGESLRWLWSLGLRPERLRVREHVKTELAHYAVQTFDIEYFF 322

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                K +        +      +YS    A     +GK     +     G  R++ AV+
Sbjct: 323 PYMGWKEIEGIANRSDYDLKRHQEYSG--EALHIVDNGKTVIPYVIEPSFGLERILLAVL 380

Query: 330 ESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             S+  +     +     +APFK ++  +   D        +IY +L K     ++D+  
Sbjct: 381 TDSYVREERRTYLRLKPRIAPFKCAVFPLVKRD-GLDVKAREIYNQLKKH-FRCYYDE-D 437

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             IG ++A AD +G P  + +  + + D  V I+ R T  +    +E +    S   +
Sbjct: 438 GSIGRRYAKADEIGVPFSITIDGQTLRDDTVTIRFRDTKEQIRERVENLKARLSELIA 495


>gi|152994964|ref|YP_001339799.1| glycyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|150835888|gb|ABR69864.1| glycyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 458

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 77/490 (15%), Positives = 149/490 (30%), Gaps = 113/490 (23%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I Q S      +G Y + PLG +  +N+ A         R     +    +Q+
Sbjct: 12  LCKRRGFIFQGSEIYGGMQGAYDYGPLGIELKNNLKAAWWRSMVYERDDVEGLDAAIIQN 71

Query: 77  ADLWVESGRYDSYGK--------------------------------------EMLRL-- 96
             ++  SG  D++                                         M +   
Sbjct: 72  KHVYKYSGHEDTFTDPMVDCHECKSRMRADHMKDIKVCDNCGSTNVTEPRDFNLMFKTNV 131

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSR 153
                 +      P   + +   F++ + S  R LPF   QI   FR+E+ PR  + R R
Sbjct: 132 GPMVNEESYTYLRPETAQGIFTNFKNVVDSTSRTLPFGIAQIGKSFRNEITPRNFIFRVR 191

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF   +   F    E  K                                    HEF V 
Sbjct: 192 EFEQMELEFFCKPGEDEK-----------------------------------WHEFWVG 216

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS--- 270
           A          + ++D  +  EN  F+ +   +      +         H  +  +    
Sbjct: 217 ARK--------QWWLDQGLAEENIQFEYVTGDDLAHYSKSTVDILYKFPHGFEELEGVAN 268

Query: 271 --LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAA 327
               +    +    E G                 +   + K           G  R + A
Sbjct: 269 RTDYDLGSHTKAQEEFGLSAKVKKNEHSTAKLAIRDLEENKWEVPFCIEPSAGLDRGLLA 328

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC- 377
           V+  ++  + +          +   +AP K++++ +K +        +++  +L K+G  
Sbjct: 329 VMTEAYTEEELPNGTSRTVLKFKPHLAPIKVAIMPLKKNKPEIVALAKELKNKLQKLGLG 388

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK--VEIKHRLTGIREDMSLEEVI 435
            + +++ G  +G  +   D +G P+ V V    +      V ++ R T  +  +   ++ 
Sbjct: 389 RILYENTGN-VGKGYRRHDEVGTPICVTVDFDSIEQEGAPVTVRDRDTMEQIVVPAADLP 447

Query: 436 NYASHRFSNN 445
            Y  + F N 
Sbjct: 448 AYVINYFINK 457


>gi|228475224|ref|ZP_04059950.1| histidine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270835|gb|EEK12237.1| histidine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 425

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 140/450 (31%), Gaps = 60/450 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  +G    LP        +   + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPQESAKWRYIENKLDELMKLYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ D+++   P   E    + RS+I++        P   Y     FR E +
Sbjct: 60  VQKEMYTFKDKGDRSITLRP---EGTAAVVRSYIENKMQGEPNQPIKLYYNGPMFRYERK 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F      +              M    + I+   GLK + +   S  IG 
Sbjct: 117 QK---GRYRQFNQFGVEAIGAENPSIDAEVLAMV---MHIYESFGLKHLKLVINS--IGD 168

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S +     +  E  +   +  +D       +            +      A       
Sbjct: 169 QASRK-----EYNEALMKHFEPVIDTFCNDCQSRLHTNPMRILDCKIDRDKEAVKHAPRI 223

Query: 265 EKLFD----SLPENKRVSARGIEVGHIFYF----GTKY--SLPMSATFKGADGKDHYVQM 314
               +    +  E  +     +++ ++       G  Y             +       +
Sbjct: 224 TDYLNDESKAYYEAVKHHLDQLDINYVEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTL 283

Query: 315 GSYGIGAMRVVAAVIESSHDGK--GIIWPDSVAP-----------------FKISLINIK 355
              G         ++E     K  GI +  S+                   F + ++ + 
Sbjct: 284 CGGG-----RYNGLLELLDGPKQTGIGFALSIERLLLALEEEDIELNVDEDFDLFVVTMG 338

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +       K+   L K G     D +  +I  Q   AD L     +++G + + ++K
Sbjct: 339 KKAE---QYSVKLLNDLRKHGVKADKDYLNRKIKGQMKQADRLNAKYTIVIGDQELDNNK 395

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +++K   TG  + + L+EV+++ +    N 
Sbjct: 396 IDVKEMSTGETKTIQLDEVVSFFNKEKENK 425


>gi|321312284|ref|YP_004204571.1| histidyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|291485165|dbj|BAI86240.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320018558|gb|ADV93544.1| histidyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 424

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 141/439 (32%), Gaps = 48/439 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +   +G    LP        V  I+R+        E+  P  +  +L+        D 
Sbjct: 1   MGYNIPRGTQDILPGESDRWQYVEQIMRDTCRTYQYKEIRTPIFEHTELFARGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P         F  + + +    P   Y +   FR E RP+ 
Sbjct: 61  VQKEMYTFEDRKGRSLTLRPEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYE-RPQT 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP-MRAESGPIGGDL 206
           G  R R+F      +              +    + I+ + GL+++  +    G      
Sbjct: 120 G--RYRQFYQFGIEAIGSKDPAIDAE---VMALAMSIYEKAGLENVKLVINSLGDQDSRK 174

Query: 207 SH-EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           S+ E +V       + FCS               D     +  + +         +  + 
Sbjct: 175 SYREALVKHFEPRIEEFCSDCQSRLHTN-PLRILDCKKDRDHELMKSAPSILTYLNEESA 233

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQM 314
             FD + +         E+      G  Y           +    A    A G  +   +
Sbjct: 234 AYFDKVKQYLNDLGISYEIDPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLV 293

Query: 315 ----------GSYGIGAMRVVAAVIESSHD---GKGIIWPDSVAPFKISLINIKAHDQVC 361
                       + +   R++AA+     +    KGI            ++ +    +  
Sbjct: 294 EQIGGPEAPGIGFAMSIERLLAAIDAEKRELPVDKGI---------DCYIVTLG---EKA 341

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D    +  +L + G     D   +++  QF  AD L      I+G   ++ +K+ +K  
Sbjct: 342 KDYSVSLVYKLREAGISSEIDYENKKMKGQFKTADRLNARFIAILGEDELAQNKINVKDA 401

Query: 422 LTGIREDMSLEEVINYASH 440
            TG + +++L+E I+    
Sbjct: 402 QTGEQIEVALDEFIHVMKA 420


>gi|229086967|ref|ZP_04219124.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
 gi|228696343|gb|EEL49171.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
          Length = 423

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMYGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                     +  +     +      +
Sbjct: 173 RQAHREALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRGHELMNAAPSITEYLNEES 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 TAYYEKVQELLTMMDVPFEKDLNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKFVAVLGEDELDKGIINLKSMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|72080400|ref|YP_287458.1| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 456

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 120/357 (33%), Gaps = 63/357 (17%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +     +   P   + +   F++ +++ +N LP    Q+   FR+E+ P   + R+RE
Sbjct: 156 IIEDEKTLLYLRPETAQGIFINFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTRE 215

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F+  +   F L P+ S++ +            +LG     +R                  
Sbjct: 216 FVQLELEIF-LKPDQSENFFQNEIEKIKNFLKKLGFAKNSIRLN---------------- 258

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  +  K+ +     +      +       +   +         H+EK  + L   
Sbjct: 259 -------YHKKEKLAHYAKATVDFEYNFNFGWGELIGISNRGDYDLKNHSEKSGEKLEF- 310

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH- 333
                                         A GK     +    +G  R++ AV+E    
Sbjct: 311 ---------------------------VDSATGKKFLPHIIEPSMGLDRLMLAVLEECFC 343

Query: 334 -----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +   +  P  ++P+K++++ +           EKI+  L            G  I
Sbjct: 344 FDSVKNRYFLKLPFILSPYKVAVLPLLKK---FNFLAEKIWNELISQKISATLVTSG-SI 399

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G ++   D++G    + +  K V +S V ++ R T  ++ + ++E+  +    F N 
Sbjct: 400 GKRYYHQDVIGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVNE 456


>gi|311273541|ref|XP_003133917.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 384

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 9   PILQENPR---DAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +L+E  +   +A+   H+ + R       H+ S G   +LP G    + +   IR E  
Sbjct: 265 KMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIDFIRSEYR 324

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           + G  E+  P + ++ LWV SG +  Y   M        +     P +      
Sbjct: 325 KRGFQEVVTPNIYNSRLWVTSGHWQHYSDNMFSFEVEK-ELFALKPMNCPGHWY 377


>gi|281355646|ref|ZP_06242140.1| glycyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281318526|gb|EFB02546.1| glycyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 445

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 73/504 (14%), Positives = 144/504 (28%), Gaps = 130/504 (25%)

Query: 10  ILQENPRDAEIASH--KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ 61
           + +E  +D E+      L  R G I   S       G + + P G +    +  +   E 
Sbjct: 1   MAEEEVKDLELMDKIVSLCKRRGFIFPSSEIYGGINGFWDYGPYGARMKRAIENLWWHEM 60

Query: 62  NRT--GAIEMSVPTLQSADLWVESGRYDSYGKEM-------------------------- 93
             T      +    +    +W  SG  D +   M                          
Sbjct: 61  VETRDNVEGLDSTIICHPRVWKASGHLDQFSDLMTDCKKCKSRYRVDQMADPTTCPNCGS 120

Query: 94  --------LRLA---------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
                     L          D    A +   T + +  D     + + + LPF   QI 
Sbjct: 121 KDLTEPREFNLMMKTFVGPVFDEEHTAWLRAETCQPIFVDFHSVRVATRQKLPFGIAQIG 180

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ PR    RSREF   +                                     
Sbjct: 181 KAFRNEINPRNFTFRSREFTQMEM------------------------------------ 204

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                       EF    + G  + F                F D      + E+     
Sbjct: 205 ------------EFFCDGEEG-MEWFEYWKQQRINYYKNKLKFSDDFFRIYVHEKLAHYA 251

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKGADGKDH-YVQM 314
            A  D+  +  F              ++  H  + G          +   D        +
Sbjct: 252 KAAIDIEVKFPFGWGELEGVHHRGTWDLTRHSEFSGED------LQYMDHDNSRKLMPTV 305

Query: 315 GSYGIGAMRVVAAVIESSHDGKG---------------IIWPDSVAPFKISLINIKAHDQ 359
               +G  R + A++  ++D +                +  P  VAP +++++ +     
Sbjct: 306 IETSVGLDRTMLALLCRAYDEEKAATAKEGMDEDTRVVLHLPPLVAPIQVAVLPLSKK-- 363

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++    +Y  + +      +D+ G  +G ++   D +G P  V       +D+ V ++
Sbjct: 364 -LKEPAYALYKEIDRH-FRCEYDETG-SVGKRYRRQDEIGTPFSVTFDFDSANDNAVTVR 420

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
           +R T  +E +++ ++ +Y   +  
Sbjct: 421 NRDTMEQERVNVTQLRDYLEKQIE 444


>gi|255994167|ref|ZP_05427302.1| histidine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993835|gb|EEU03924.1| histidine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 418

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 138/427 (32%), Gaps = 42/427 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE---SGRYDSYGK 91
             KG    +P        +     +  +  G  E+  P ++  +L+     SG  D   K
Sbjct: 4   APKGTKDLMPKETALFRYLENEFLKVASSYGYNEIMTPVIEYTELFSRGVGSG-TDIVQK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D   +++   P     +   +    +  +  P  +  +   FR E +P+ G  R
Sbjct: 63  EMYTFKDLGGRSISLRPEGTAGVARAYVQSGELSKAKPVKYSYVSSCFRYE-KPQSG--R 119

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F       F      +      + +      + +GLK I ++  S  IG +   E  
Sbjct: 120 QRMFHQLGIECFGSKEVQADAE---VIMLASDFLNNIGLKEITLKINS--IGCNKCREKY 174

Query: 212 VLADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             A     +           I  + N         +   +  +   +    + +E   D 
Sbjct: 175 KEALVKYYESVSENLCETCKIRLNTNPMRLLDCKEDECTKYSSDAPSILDFICSECANDF 234

Query: 271 LPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKGAD----------GKDHYVQMG--- 315
               + ++  GI+         G  Y    +  F   +          G+   +      
Sbjct: 235 SKLQELLTDAGIQYEVDPRIVRGLDYYNKTAFEFIHENIGAKATVCGGGRYDNLINTLAG 294

Query: 316 ------SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  +GIG  R++ A+   + D      P+ V      +I   A + V  +    I 
Sbjct: 295 IEEPGIGFGIGLERLMLAIDSENIDKSISTSPEYV------IIP--AGENVPYEKIYAIA 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G  V  D M     S    A+ +     +I+G   + +  V +K+  +G ++ +
Sbjct: 347 KMLRNSGKTVVVDIMNRNFKSLIKYANKINAKYALILGEDELKNEAVTVKNMASGDQKTV 406

Query: 430 SLEEVIN 436
            + E++N
Sbjct: 407 KISELVN 413


>gi|239827844|ref|YP_002950468.1| histidyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259511950|sp|C5D510|SYH_GEOSW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|239808137|gb|ACS25202.1| histidyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 423

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 146/447 (32%), Gaps = 58/447 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    V  I R+   R    E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDILPGEVEKWQYVEKIARDICKRYNYHEIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    DR  ++M   P   E    + RS +++        P   Y I   FR E R
Sbjct: 61  VQKEMYTFEDRAGRSMTLRP---EGTAPVVRSFVENKMYGNPNQPIKLYYIGPMFRYE-R 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP-MRAESGPIG 203
           P+ G  R R+F+     +              M    + ++  LGLK +  +    G + 
Sbjct: 117 PQAG--RFRQFVQFGVEAIGSNDPAIDAEVIAMA---MELYRSLGLKKLRLVINSLGDVE 171

Query: 204 GDLSH-----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +H                 +  V  +    ++   K   D  + +      D ++  
Sbjct: 172 TRKAHRQALIDHFKSRIHELCEDCQVRLEKNPLRILDCKKDRDHELMATAPSILDYLNDE 231

Query: 247 SIVEQWTAP-------YAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSL 296
           S                    D    +  D             E  G I     G +YS 
Sbjct: 232 SRHYFEKVKAYLTKLGIPFEVDPRLVRGLDYYHHTTFEIMSDAEGFGAITTLCGGGRYS- 290

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                     G      +G + +   R++AA+     + +GI  P S       ++ +  
Sbjct: 291 ----GLVQEIGGPETPGIG-FALSIERLLAAL-----EAEGITLPISEG-IDCYVVAVG- 338

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +D    +  +L K G     D    +I +Q   AD L      I+G   ++   +
Sbjct: 339 --EKAKDESILLVHKLRKAGIVADKDYQDRKIKAQLKSADRLNAKFVAILGDDELAKEVI 396

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            IK   TG + ++ L  V++Y   R S
Sbjct: 397 NIKEMSTGEQTEVPLHSVVDYLKERLS 423


>gi|229158019|ref|ZP_04286090.1| Histidyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
 gi|228625472|gb|EEK82228.1| Histidyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
          Length = 476

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 147/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   T  +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATSEQEEVALDVFASYVAEKL 475


>gi|170290849|ref|YP_001737665.1| glycyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174929|gb|ACB07982.1| glycyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 508

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 131/372 (35%), Gaps = 32/372 (8%)

Query: 93  MLRLADRNDKAM---IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFG 148
           M  LA   + +       P   +     FR      R  LPF   Q+   FR+E+ PR  
Sbjct: 150 MFTLAVGAEASEPNAALRPETTQGSVVEFRKTFTVMRGKLPFALGQVGRVFRNEISPRRA 209

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           ++R REF   +   F   PE     Y +    +L   ++L       R     +      
Sbjct: 210 LIRMREFQQLEVQIF-FDPENPDELYREKLEPFLD--YKLRFLRREDRESGRIV------ 260

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              + A       +     + + + +    F++ +       ++          ++   +
Sbjct: 261 --EIPAREALMSGYTVNSLITYWLVAYQRFFNETLGFPLERLRYRELVEGEKAHYSLVHW 318

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIG 320
           D     + +    + V + +   T Y L       G D         +     M    IG
Sbjct: 319 DLEVYTEDLGWIEL-VNNAYR--TDYDLSGHMRVSGIDLRIAIPESDRKLLPHMYEPSIG 375

Query: 321 AMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             RV+   +  ++        +  P S+AP ++ +  +   D++      +IY  L   G
Sbjct: 376 VDRVILHELMLAYREDEERVWLQLPRSIAPIEVGVFPLLKRDELPS-KAREIYHELINEG 434

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              F+DD G  IG ++   D +G PL V +  + + D  V ++ R T ++  +  EE+  
Sbjct: 435 IIAFYDDSG-TIGRRYRRMDEIGTPLCVTIDYQTLEDDTVTLRDRDTMMQVRVRREELPT 493

Query: 437 YASHRFSNNRPV 448
                 +++  +
Sbjct: 494 KVRKFLNSDLSI 505



 Score = 45.3 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 35 HSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
             G Y++ PLG +  + +  + R E   + G  E+  P +    ++  SG  + +  
Sbjct: 29 APAGFYTYGPLGVRMKEKIIGLWRREIVIKEGVNEIETPNVLPIKVFEASGHLEHFFD 86


>gi|330833399|ref|YP_004402224.1| hypothetical protein SSUST3_1623 [Streptococcus suis ST3]
 gi|329307622|gb|AEB82038.1| hypothetical protein SSUST3_1623 [Streptococcus suis ST3]
          Length = 424

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + +    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHNSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  TPE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-ATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNAYREISSCSNTEDFQARRAQIRYRD 369


>gi|30264473|ref|NP_846850.1| histidyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47529931|ref|YP_021280.1| histidyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187294|ref|YP_030546.1| histidyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49481486|ref|YP_038454.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141104|ref|YP_085725.1| histidyl-tRNA synthetase [Bacillus cereus E33L]
 gi|165871996|ref|ZP_02216637.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167640711|ref|ZP_02398971.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170709260|ref|ZP_02899680.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|254724670|ref|ZP_05186453.1| histidyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|39932344|sp|Q81LI6|SYH2_BACAN RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|81394747|sp|Q6HDC2|SYH2_BACHK RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|81686102|sp|Q634E2|SYH2_BACCZ RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|30259131|gb|AAP28336.1| histidine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505079|gb|AAT33755.1| histidyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181221|gb|AAT56597.1| histidyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49333042|gb|AAT63688.1| histidine--tRNA ligase (histidyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974573|gb|AAU16123.1| histidine--tRNA ligase (histidyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|164712286|gb|EDR17822.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167511283|gb|EDR86669.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170125836|gb|EDS94743.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0389]
          Length = 423

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLAVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|218905598|ref|YP_002453432.1| histidyl-tRNA synthetase [Bacillus cereus AH820]
 gi|218536362|gb|ACK88760.1| histidyl-tRNA synthetase [Bacillus cereus AH820]
          Length = 423

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VKEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLAVEKDYLDRKMKAQFKSADRLKAKFVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGEQEEVALDVFASYVAEKL 422


>gi|312793587|ref|YP_004026510.1| glycyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180727|gb|ADQ40897.1| glycyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 434

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/477 (15%), Positives = 154/477 (32%), Gaps = 113/477 (23%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S   G     + + PLG +  +N+  +  +   Q R   + +    L +
Sbjct: 10  LCKRRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMN 69

Query: 77  ADLWVESGRYDSYGK--------------------------------EML---------R 95
             +W  SG   ++                                   M           
Sbjct: 70  PKVWEASGHLSNFADPMADCKVCKKRWRVDQLQEYKCPECGGELTEARMFNLMFKTFMGP 129

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D +    +   T + +  +         + LPF   QI   FR+E+ P   + R+REF
Sbjct: 130 VEDESAVVYLRPETAQGIFVNFINVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRTREF 189

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F + P   +  +       +  +++LG+K                 E + + +
Sbjct: 190 EQMEIEYF-VKPGTDEQWHKHWIEQRINWYYKLGIK----------------RENLRIRE 232

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G+ ++                      +   I   +   ++    + N   FD      
Sbjct: 233 HGKDELA-----------------HYAKACVDIEYLFPMGWSELEGIANRTDFDLTQH-- 273

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                            KYS      F     + +   +     G  R + A +  +++ 
Sbjct: 274 ----------------QKYSGENLTYFDDETKQRYIPYVIEPSAGVDRSLLAFLIDAYEY 317

Query: 336 KGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + I             ++AP K ++  +   +++ +   ++IY  L      V +D+ G 
Sbjct: 318 QQIDKDDFRVVLHLHPAIAPVKAAVFPLMKKEELVK-KAKEIYNELKYKWI-VQYDESG- 374

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  + V  + + D  V I+ R T  +  + ++E+I Y   R  
Sbjct: 375 SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVRVHIKEIIPYLEERIE 431


>gi|87118881|ref|ZP_01074780.1| glycyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86166515|gb|EAQ67781.1| glycyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 458

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/489 (15%), Positives = 148/489 (30%), Gaps = 113/489 (23%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I Q S      +G Y + PLG +  +N+           R     +    +Q+
Sbjct: 12  LCKRRGFIFQGSEIYGGMQGAYDYGPLGVELKNNLKNAWWRAMVYERDDVEGLDAAIVQN 71

Query: 77  ADLWVESGRYDSYGK--------------------------------------EMLRL-- 96
             ++  SG  D++                                         M +   
Sbjct: 72  KLVYKYSGHEDTFTDPMVDCHECKARMRADHMKDIKVCDNCGSSDVTEPRDFNLMFKTNV 131

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSR 153
                 +      P   + +   F++ + S  R LPF   QI   FR+E+ PR  + R R
Sbjct: 132 GPMVDEESYTYLRPETAQGIFTNFKNVVDSTSRALPFGIAQIGKSFRNEITPRNFIFRVR 191

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF   +   F    E  K                                    HE  V 
Sbjct: 192 EFEQMELEFFCKPGEDEK-----------------------------------WHETWV- 215

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS--- 270
                      + ++D  +  EN +F+ +   +      +         H  +  +    
Sbjct: 216 -------ALRKQWWLDQGLGEENIEFEYVTGDDLSHYSKSTVDILYKFPHGFEELEGVAN 268

Query: 271 --LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAA 327
               +    +    E G                 +  A+ K           G  R V A
Sbjct: 269 RTDYDLGSHTKAQAEFGITANVKENSDSTAKLAVRDLAENKWEVPFCIEPSAGLDRGVLA 328

Query: 328 VIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC- 377
           V+  ++  + +          +   +AP K++++ +K +        +++  +L K+G  
Sbjct: 329 VMTEAYTEEELADGKSRTVLKFKPHLAPIKVAIMPLKKNKPEIVALAKELKNKLQKLGLG 388

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK--VEIKHRLTGIREDMSLEEVI 435
            + +++ G  +G  +   D +G P+ V V    +      V ++ R T  +  +   E+ 
Sbjct: 389 RILYENTGN-VGKGYRRHDEVGTPICVTVDFDSIEKEGAPVTVRDRDTMEQITVPAAELA 447

Query: 436 NYASHRFSN 444
            Y  + F N
Sbjct: 448 GYVVNYFIN 456


>gi|147677383|ref|YP_001211598.1| histidyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|189082303|sp|A5D3E2|SYH_PELTS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146273480|dbj|BAF59229.1| histidyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 425

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 135/445 (30%), Gaps = 51/445 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP   +    + +  R      G  E+  P  +  +L++       D 
Sbjct: 1   MLTTRPRGTNDILPGEVEKWQYIESQFRRICREYGYGEIRTPVFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR  +++   P +       +  +       P   +     FR + RP+ G
Sbjct: 61  VEKEMYTFTDRGGRSITLRPENTAPAVRAYLENRLYAGPQPVKLFYAGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F       F             M    +  + RLGLK++ +   S       P+
Sbjct: 120 --RFRQFHQLGVEVFGSHDPAVDAEVMAM---AMDFYGRLGLKNLELHINSVGCPVCRPL 174

Query: 203 GGDLSHEFIVLA------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                 ++                D    +V   K+     I ++     D         
Sbjct: 175 LRRRLQDYFRPHLERLCKNCRSRFDKNPLRVLDCKEAACAEIGADAPFAID-------CL 227

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
             +            +L +      R   RG++      F        + +  G  G+ +
Sbjct: 228 CESCLEHFEKVKKYLELLNVSYTVNRRLVRGLDYYTHTAFEVTARDIGAQSSIGGGGRYN 287

Query: 311 YVQMGS---------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            +             Y +G  R++ A+       +GI  P    P     + +    Q  
Sbjct: 288 GLVEVCGGPPTPGVGYALGLERIILAL-----RQQGIGLPGESGPE----VFLATAGQAV 338

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 +  RL   G     D +   + +Q   A  +G    VI+G   +    V ++  
Sbjct: 339 MPEAFGLLFRLRSAGISADKDYLDRSLKAQMKYAGKIGARYAVIIGESELKQGTVLVRDM 398

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
             G +  + L+ V+ Y   + +  +
Sbjct: 399 AAGEQSAVKLDGVLQYLREKITGRK 423


>gi|296121907|ref|YP_003629685.1| glycyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296014247|gb|ADG67486.1| glycyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 551

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 125/369 (33%), Gaps = 45/369 (12%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +         D A    P   + M   F++   S R  +PF   QI   FR+E+ PR 
Sbjct: 210 MFKTTLGALGTEDDAAFLRPETAQGMFVNFKNVCDSSRVKIPFGIAQIGKSFRNEITPRN 269

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F    +     Y        + +  LG+           I  + +
Sbjct: 270 FTFRSREFEQMEMEFFCHPKDSLA-WYTYWRDRRYKWYTDLGIS------SDNLILREHT 322

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE +     G   V  +  F    +P+      + ++     +  +          NE +
Sbjct: 323 HEELAHYSVGTADVEYAFPF----LPAGEYGELEGVAHRGDFDLRSHSQGKLRKEGNELV 378

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            ++  +           G   Y G+   L     F     +     +     G  R   A
Sbjct: 379 VEAGTD-----------GKPKYLGSGKDLSY---FDDQSRERFLPHVIEPAAGCDRATLA 424

Query: 328 VIESSH------DGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  ++      D KG       +     +AP K+++  +   D    +   +IY    +
Sbjct: 425 FLCEAYHEDKQPDEKGEMQERVVLKLHPRLAPVKVAIFPLIKKD-GMPEKAAEIYREFKR 483

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G    +D     IG ++   D +G P  + V    +S   V I++R T  +  + ++EV
Sbjct: 484 AGITAAYDQQAA-IGRRYRRMDEIGTPYCITVDGDTMSADTVTIRNRDTLEQIRLPVKEV 542

Query: 435 INYASHRFS 443
           +++ +    
Sbjct: 543 VDHIAKLVR 551


>gi|88602971|ref|YP_503149.1| glycyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|88188433|gb|ABD41430.1| glycyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 572

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 143/424 (33%), Gaps = 74/424 (17%)

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGV 149
           M +      + +     P   + +   F   ++ YR+ LPF   QI   +R+E+ PR G+
Sbjct: 145 MFQTTIGPGSQRKGYLRPETAQGIFVDFGRLLRFYRDKLPFGTVQIGRSYRNEISPRQGM 204

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY----LRIFHRLGLKSIPMRAESGPIG-G 204
           +R REF   +A  F + PE   H     +  Y    L    +LG            +  G
Sbjct: 205 IRLREFTQAEAEIF-VHPEMKDHPNFARYADYAFPLLSSEQQLGGLEAKTYTMKDAVAAG 263

Query: 205 DLSHEF--IVLADTGETQV----FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP--- 255
            +++E+    LA T E  V      S+      +P E   + +      I  +       
Sbjct: 264 VIANEYVAYYLALTHELLVTIGVMPSRLRFRQHLPDERAHYAEDCWDAEIFSERFGWVET 323

Query: 256 ------YAATSDVHNEKLFDSLPENKRVS-----ARGIEVGHIFYFGTKY-------SLP 297
                        H E+  DS     +        R +   ++   G KY       S  
Sbjct: 324 VGIADRTDYDLKAHAEQSGDSFTAYIQYDEPRREKRRVINANMGVLGPKYRGKAKAISDA 383

Query: 298 MSATFKGADGK----------------------------DHYVQMGSYGIGAMRVVAAVI 329
           +     G DG                             D    +     G  R++ AV+
Sbjct: 384 LQEVTPGPDGATVIIDGEEIFVPADLYEVKEEEVDVRGVDVRPHVIEPSYGIDRMIYAVL 443

Query: 330 ESSHDG--------KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           E S+          K + +P  VAP ++++  + A D       ++I   L   G    +
Sbjct: 444 EHSYFEEEVEGEVRKVMRFPSRVAPVQVAIFPLMARD-GLDVMAKEIARTLQMQGILAEY 502

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++   D +G P  V V    + D  V ++ R +  +  +  +++++     
Sbjct: 503 DDSGA-IGRRYRRQDEIGTPFAVTVDYDSLEDQTVTLRDRDSMQQVRIPKDQLVDLIPAL 561

Query: 442 FSNN 445
               
Sbjct: 562 IRGK 565


>gi|320334724|ref|YP_004171435.1| glycyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756013|gb|ADV67770.1| glycyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 504

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 114/376 (30%), Gaps = 65/376 (17%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRF 147
           M +         D      P   + +   F++ + S  R LPF   QI   FR+E+ PR 
Sbjct: 169 MFKTTIGPTADEDSYGYLRPETAQGIFTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRN 228

Query: 148 GVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            + R RE    +   F    T E                                     
Sbjct: 229 FIFRVRELEQMEIEFFCAPGTDEDWHE--------------------------------- 255

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             H           Q    +      +P E+       + + + +  T  Y     + N 
Sbjct: 256 --HWLQARLAWWAAQGVPREKIQILDVPKEDLAHYSKRTYDLMYDYPTLGYEEIEGIANR 313

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRV 324
             +D     K     GI+                 T    D  K     +     G  R 
Sbjct: 314 SDYDLGSHTKAQGELGIQA----RVEENLDSVAKLTIPHPDTNKPVVPFVIEPSAGVDRA 369

Query: 325 VAAVIESSHD----GKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           + AV+  ++       G     +     +AP K+++I +  + +      + + A L K+
Sbjct: 370 MLAVLSEAYTKETLENGSERIVLKLKPHLAPIKVAVIPLARNREEIVSVAKSVKADLQKL 429

Query: 376 GC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-------GSKFVSDSKVEIKHRLTGIRE 427
           G   + ++D G  IG  +   D +G P  V V       G        V ++ R T  +E
Sbjct: 430 GLGRILFEDSGN-IGKAYRRHDEVGTPFCVTVDFDTVGKGEDEALVDTVTVRDRDTLAQE 488

Query: 428 DMSLEEVINYASHRFS 443
            + + ++  Y + R  
Sbjct: 489 RVKISDLAAYLTSRLK 504


>gi|219685484|ref|ZP_03540302.1| glycine--tRNA ligase [Borrelia garinii Far04]
 gi|219673040|gb|EED30061.1| glycine--tRNA ligase [Borrelia garinii Far04]
          Length = 445

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/484 (15%), Positives = 149/484 (30%), Gaps = 113/484 (23%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+ +   +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKSEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     +    +                  +F++H
Sbjct: 70  PEIWRASGHIDGFSDSMVDCKDCKSRFRADFVDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSHEIYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +R +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKIRPDK--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       S   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKSAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI--- 329
            +K  +   I   H      +Y                   +     G  R V  ++   
Sbjct: 277 HSKFSNNPKIFEYHDLLTKERYV----------------PHVIETSAGLTRSVLMILCNA 320

Query: 330 ---ESSHDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              E   DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD
Sbjct: 321 YSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EIARRIYMELCD-DFHIFYDD 378

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G  IG ++   D +G P  V V    + D  V ++ R    ++ + + ++ +Y      
Sbjct: 379 SG-TIGKRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKRIFINDLYSYIKTEIL 437

Query: 444 NNRP 447
           N + 
Sbjct: 438 NYKE 441


>gi|222478731|ref|YP_002564968.1| glycyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451633|gb|ACM55898.1| glycyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 594

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/547 (14%), Positives = 155/547 (28%), Gaps = 144/547 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWV-------------- 81
            G Y++ P G     NV    R+      G  E+  PT+    ++               
Sbjct: 27  AGFYTFGPQGAALKKNVEDAWRDRFTIREGNREIEAPTIMPEAVFEASGHLEGFDDMLVE 86

Query: 82  -----ESGRYDSYGK------------------------------------------EML 94
                ES R D   +                                           ++
Sbjct: 87  CPECGESHRADHLVEAVTEIEDAEALPGSEVEELIADNDIACPSCGTPLAGVTVEDFNLM 146

Query: 95  RLADR---NDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
              D    + +     P T + +  +  R    +  NLPF   QI   +R+E+ PR G++
Sbjct: 147 FATDIGPGDGQPGYLRPETAQGIFVEFPRLKEYARGNLPFGITQIGPAYRNEISPRGGLL 206

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVS------------------------------ 180
           R REF   +   F + PE  +   +++                                 
Sbjct: 207 RLREFTQAELEQF-IDPEEDEPPLDRVRDVSVRLYPATEQQAEDGEYVETTIGEAVDEEI 265

Query: 181 --------YLRI----FHRLG-----LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                   YL +    + R+G      +     A           +     D    ++  
Sbjct: 266 IGSPWVGYYLGVAKEWYDRIGVDLDRFRFRQHLAGERAHYASDCWDAESEVDGDWIEIAG 325

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY-----AATSDVHNEKLFDS-------- 270
                D+ +   +   DD  ++    ++             S +  E   D+        
Sbjct: 326 FSYRADYDLSKHDEYGDDAFTVFKRYDEPKTVERATVDPDMSVLGPEFGGDAAAVAEALE 385

Query: 271 -----LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                 P+        +EV              S      +G+     +     G  R V
Sbjct: 386 TLAERDPDAFDSETVSVEVNGDDQTVDTDVANFSVETVTENGEHLTPHVVEPSFGVGRTV 445

Query: 326 AAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             ++  ++            +     VAP   ++  +  +D    +  +++ A L + G 
Sbjct: 446 QTLLAHAYSEDEVDGEERTYLSLEPEVAPQDAAVFPLVTNDDRLTELADRVAADLREAGV 505

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DS--KVEIKHRLTGIREDMSLEEV 434
            V +DD G  IG ++   D +G P  V +    +  D    V ++ R + ++  +  EE+
Sbjct: 506 AVAYDDSG-SIGRRYRRQDEIGTPFCVTIDRDGIEGDGPETVTVRERDSAVQVRVPAEEL 564

Query: 435 INYASHR 441
               +  
Sbjct: 565 ATELTAL 571


>gi|46446019|ref|YP_007384.1| histidine-tRNA ligase [Candidatus Protochlamydia amoebophila UWE25]
 gi|81697685|sp|Q6ME90|SYH_PARUW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46399660|emb|CAF23109.1| probable histidine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 424

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 158/444 (35%), Gaps = 54/444 (12%)

Query: 31  MIHQHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           M      G++  +P             D V   IR+     G  E+  P  +  +L+  S
Sbjct: 1   MKFSIPPGVFDIIPTNTQEIWKSSYLWDFVERTIRKTVRDYGYQEIRTPLFERTELFQRS 60

Query: 84  -GRY-DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPF-TFYQIQLK 138
            G   D   KEM    D+  ++M   P   E    + RS I++  +   P    + I   
Sbjct: 61  VGETSDIISKEMYTFEDKGGRSMSLRP---EGTAPVMRSFIENQLHTIAPLQKLFYIAPM 117

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           FR E R + G  R R+     A +    +PE      + ++  Y     RLGL+++ +  
Sbjct: 118 FRYE-RAQAG--RYRQHHQFGAEAIGNSSPEQDAELIDLLYTLY----KRLGLQNLSLNI 170

Query: 198 ES------------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            S                   P   +LS +     +T   ++  SK+  D  I ++    
Sbjct: 171 NSIGTISCRHTFRQALKDYLKPHLNNLSSDSQNRFETNPLRILDSKNAQDKQIVADAPSI 230

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D +  +S +                ++   L        + +    +   G + S+   
Sbjct: 231 LDFLDEDSQIHFEQLKKLLKQLKIPYQVNPLLVRGLDYYNKTVFEVVVGELGAQNSIGGG 290

Query: 300 ATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             + G     G      +G +G G  R++  +I       GI  P   +P   SL  I  
Sbjct: 291 GRYDGLLRELGGPDLPSIG-FGTGIERIIQTMINQ-----GIPLP---SPCHPSLFLIPM 341

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+  +  C  +   L + G     D  G+++G     AD +     V++G   +   ++
Sbjct: 342 GDE-AKQLCFTLTHELRQQGIPTQMDFSGKKLGKVLQYADQIESTYVVVIGENELQTQEI 400

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
           E+K   +G +  ++++E+     +
Sbjct: 401 ELKELASGKKYKLTIDELAPTLKN 424


>gi|34596188|gb|AAQ76784.1| bifunctional aminoacyl-tRNA synthetase [Herdmania curvata]
          Length = 187

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +++ ++ MI  +   G Y   P      + + A    E  + G      P   S   L  
Sbjct: 10  QVITKSEMIEYYDVSGCYILRPWSYGIWERIKAFFDTEIKKLGVENCYFPIFVSQSALEK 69

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +         + +   PT E VM   +   ++S+R+LP  + Q   
Sbjct: 70  EKEHIEDFAPEVAWVTKSGQSELAEPIAIRPTSETVMYPAYAKWVQSHRDLPLRYNQWCN 129

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
             R E +     +R+REFL ++ +S   T   ++    ++   Y +++  
Sbjct: 130 VVRWEFKHPQPFLRTREFLWQEGHSAFATKPEAEKEVLQILELYAQVYED 179


>gi|298711240|emb|CBJ32460.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 147

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +     G++     ++  +  G   +W   +AP ++ L+ +     V RD C ++ ++ 
Sbjct: 1   MLHRAIFGSLERFFGILVENTAGTFPLW---LAPEQMRLLPVT---DVARDYCLEVQSKF 54

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G  V  D   E++  Q   A+    P+  +VG K V+   + ++ R  G   D+ ++
Sbjct: 55  KKAGLRVKVDRGSERLAKQIRTAEKERIPVMSVVGEKEVAAGTLAVRSRGFGDMGDVPID 114

Query: 433 EVIN 436
           E+I 
Sbjct: 115 ELIA 118


>gi|219684604|ref|ZP_03539547.1| glycyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219671966|gb|EED29020.1| glycyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 445

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 149/478 (31%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+ +   +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKSEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     +    +                  +F++H
Sbjct: 70  PEIWRASGHIDGFSDSMVDCKDCKSRFRADFVDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSNEIYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +R +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKIRPDK--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       S   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKSAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +K  +   I   H      +Y        + + G    V M      +        E  
Sbjct: 277 HSKFSNNPKIFEYHDLLTKERYVPH---VIETSAGLTRSVLMTLCNAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EIARRIYMELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V V    + D  V ++ R    ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKRIFINDLYSYIKTEILNYKE 441


>gi|83590513|ref|YP_430522.1| histidyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|123752887|sp|Q2RHW0|SYH_MOOTA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|83573427|gb|ABC19979.1| histidyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 423

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 131/445 (29%), Gaps = 63/445 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP        +    RE     G  E+  P  +  +L+        D 
Sbjct: 1   MLTSRPRGTEDILPEEVGRWYLLENTAREVSRLYGYREIRTPIFEHTELFNRGVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR D+++   P     +   F  H    R LP   + +   FR   RP+ G
Sbjct: 61  VEKEMYTFIDRGDRSLTLRPEGTAPVVRAFVEHSLEARGLPVKLFYLGPMFRY-GRPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      +F             +    +  + RLGLK + +   S  +G     
Sbjct: 120 --RLRQFHQFGVEAFGSRDPALDAE---VIALAMDFYTRLGLKDLELHLNS--VGCPA-- 170

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                    E      +  ++   P+    F+         +                  
Sbjct: 171 ---CRPAHREKLKAYLRPRLEELCPTCQGRFERNPLRIFDCKSPACQEIVREAPTVTASL 227

Query: 269 DSLPENKRVSAR------GIEVGHIFYF--GTKY--SLPMSATFKGA------------- 305
                      +      GIE     +   G  Y          KG              
Sbjct: 228 CPDCAGHFHRVQEYLKALGIEFILDEHLVRGLDYYTKTAFEIMVKGIGAQSSIGGGGRYD 287

Query: 306 ------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  GK        +G+G  RV+ A +E          P       + ++       
Sbjct: 288 GLVAALGGKQVPGI--GFGLGLERVLLA-LEIQGQE-----PPPEGGVDVLVVTAGTG-- 337

Query: 360 VCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQ--VIVGSKFVSDSK 415
               A  ++ A L   G     D  +   +   ++A      +P +  VI+G + ++  +
Sbjct: 338 -VDLAAFRLLAGLRAAGIRADKDYLERSLKGQMKYAN----RYPARMAVILGEEELARGR 392

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V ++    G +E++ L  V++Y   
Sbjct: 393 VSVRRLDAGSQEEVPLAAVVDYCRK 417


>gi|110770771|ref|XP_001123266.1| PREDICTED: translation initiation factor IF-3-like, partial [Apis
           mellifera]
          Length = 283

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            + G   +W   +AP ++ +  I        +   ++ A L   G  V  DD  E+I ++
Sbjct: 1   QYAGHFPLW---LAPVQVVVATIVND---VENYAREVVALLKAQGIRVELDDRNEKINAK 54

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                L   P+ +++G K   +  + ++      +E M+L E ++     
Sbjct: 55  IREHSLQHVPVILVIGRKEAEERHLAVRRLGGKSQEIMALNEAMDQLRSL 104


>gi|197294659|ref|YP_001799200.1| glycyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|171853986|emb|CAM11949.1| Glycyl-tRNA synthetase, class II [Candidatus Phytoplasma
           australiense]
          Length = 452

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 121/366 (33%), Gaps = 72/366 (19%)

Query: 92  EMLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRP 145
            ML            K +   P   + +   F++ +K+  + +PF   Q+   FR+E+ P
Sbjct: 141 NMLFQTHQGVVLEKSKPLYLRPETAQGIFIQFKNILKTTRKKIPFGVCQVGKVFRNEITP 200

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
              + RS EF   +   F   P      +        +    LG+K              
Sbjct: 201 GNFIFRSCEFEQMELEFF-CEPNTQNEWFEYWKNFMYQFLITLGMK-------------- 245

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                                        E + + +  +       W            +
Sbjct: 246 -----------------KENLSFKNHQKEELSHYSEKTTDILFKFPWGMDELWGIASRTD 288

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRV 324
               +   + +                        T+   + +  Y   +    +G  R+
Sbjct: 289 FDLKNHQNHSKK---------------------DLTYFDPNTQKRYFPYVIEPSLGVERL 327

Query: 325 VAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             A++ +++            + +   +AP+K++++ +   +   +   ++I   L K  
Sbjct: 328 FLALLINNYHEDSVNQTPRQVLTFHPFLAPYKVAVLPLIKKEHASK--AKEIENYLMKY- 384

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  + IG ++   D++G P  + V  + +  + V +++R T  +E M+LEEV N
Sbjct: 385 LDVCYDDT-QSIGKRYRRQDMIGTPFCLTVDHETLEKNTVTLRNRDTLKQETMTLEEVKN 443

Query: 437 YASHRF 442
           Y   + 
Sbjct: 444 YVLSQV 449


>gi|84995882|ref|XP_952663.1| prolyl-t-RNA synthase [Theileria annulata strain Ankara]
 gi|65302824|emb|CAI74931.1| prolyl-t-RNA synthase, putative [Theileria annulata]
          Length = 460

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 6/189 (3%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + S GIY+ LPLG + ++ ++ I   E  + GA+++S P L   ++   +G       E+
Sbjct: 74  KLSSGIYTTLPLGHRIINRISNIFNVELYKLGAVQLSFPLLNPDNVVSNTGNTVGDS-EL 132

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHI--KSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +++           T E++   + ++ +   S   LP   YQI  KFRDELR   G +R
Sbjct: 133 FKVSRNGSLEYRLSGTCEDLCNVVLKNELTPLSKLQLPVLLYQINTKFRDELRVNEGKVR 192

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REFLM D YS   + + S  +Y+ +   ++ I   LGL+   +      I    SHE  
Sbjct: 193 LREFLMLDLYSLHSSEQCSDSTYSLVLECFVNILRLLGLQFTTLNCNRNNI---FSHELR 249

Query: 212 VLADTGETQ 220
           V     + Q
Sbjct: 250 VQHSNNQDQ 258



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 13/170 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +E          + S   +EVGH+F FGT+YS      ++ +  +   + M SYGIG  R
Sbjct: 246 HELRVQHSNNQDQNSNTELEVGHLFKFGTRYSDTYGLEYEVSGRRREKLYMNSYGIGINR 305

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++  +I +  D  GI  P  VAP+ I++I+    D        +I   L K G  V +DD
Sbjct: 306 LLNVLINNYSDEFGIKLPQLVAPYDITIIDSTTKD------GWQISRGLMKKGLTVLYDD 359

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             + I ++   +  +G P  +I+G      + +  K+RL     + S+ E
Sbjct: 360 RNDTIKNKLLDSKRIGIPHILILG------NSLNGKNRLNKKLWE-SINE 402


>gi|332799864|ref|YP_004461363.1| Histidyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332697599|gb|AEE92056.1| Histidyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 438

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 141/437 (32%), Gaps = 44/437 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +  IIR    + G I +  P ++ +++ +  G  ++  K++ R 
Sbjct: 12  PGFLELLPKDQILFNEIKDIIRNTYEKHGFIPIDTPLIEKSEILLAKGGGET-EKQIYRF 70

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             + D  M         +      H  S    PF  Y I   +R E   R    R REF 
Sbjct: 71  T-KGDTDMALRFDLTVPLARYVAQHF-SELTFPFRRYHIGKVYRGEKSQR---GRFREFY 125

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--------GGDLSH 208
             D            +    + + Y   F  LG ++  ++  +  I        G   S 
Sbjct: 126 QCDVDIIGNGKLNVIYDAEILSIIYC-TFKNLGFENFTIKINNRKILNGFFSSLGITNSV 184

Query: 209 EFIVLADT----------------GETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQ 251
           E +   D                 G ++   +K      I   + +    + SLN   + 
Sbjct: 185 EVLRAIDKLEKIGEKGVIDELINLGLSRDAVTKILKFIQIRGNDEEKLQSLKSLNIESQI 244

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------- 303
           +         V +      +PE        I  G  +Y GT Y   +    +        
Sbjct: 245 FQEGIKELITVTDYTKIFGVPEKNYTIDLTIARGLDYYTGTVYETFLDDYPEIGSVCSGG 304

Query: 304 -GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +  ++Y      G+G    +  +     +   +         K+ +I +   D+   
Sbjct: 305 RYENLAEYYTTQKLPGVGVSIGLTRLFYQLKEAGLLENDTPSTFTKVLIIPM---DESFN 361

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               KI   L +            +IG +   A+ L  P  + +G + V + K  +K   
Sbjct: 362 GYAIKIANTLRENNIISEVYFEDAKIGKKLNYANNLNIPYTIFIGDEEVKNQKASLKDMK 421

Query: 423 TGIREDMSLEEVINYAS 439
           +G +  +++++VI    
Sbjct: 422 SGFQALITVDDVIKTVK 438


>gi|323490013|ref|ZP_08095234.1| histidyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396309|gb|EGA89134.1| histidyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 426

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 140/452 (30%), Gaps = 78/452 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G Y  LP        V   I +        E+  P  +  +L+        D   K
Sbjct: 4   QAPRGTYDVLPDQSAKWQEVEQKINDLCRLYQYKEIRTPIFEHTELFQRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY----RNLPFTFYQIQLKFRDELRPRF 147
           EM    DR D+++   P   E    + RS++++      + P   +     FR E RP+ 
Sbjct: 64  EMYTFQDRGDRSLTLRP---EGTASVVRSYVENKLFGMPDQPVKLFYTGPMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    + ++  +GLK   +R     +G   S
Sbjct: 120 G--RMRQFVQFGVEAIGSKDPAIDAE---VISLAMEVYRSVGLK--KLRLVINSLGDTES 172

Query: 208 ----------------HEFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDI----- 242
                           +EF        +    ++   K   + P+ +      +      
Sbjct: 173 RIAHKEALIKHFEPSINEFCNDCQTRLEKNPLRILDCKVDRNHPLMATAPSLTNYLNEES 232

Query: 243 --ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYS-L 296
                       +       D +  +  D             E  G I     G +Y+ L
Sbjct: 233 RAYFDEVQSYLTSMDIEFVVDPNLVRGLDYYNHTAFEIMSDAEGFGAITTLAGGGRYNGL 292

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL----- 351
                   A G         + +   R++ A+                   K+ +     
Sbjct: 293 VEDLGGPDAPG-------IGFAMSIERLLLALEME----------------KVVIGQSNN 329

Query: 352 --INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             + + A D+  +     +   L   G     D  G ++ +Q   AD  G    +++G  
Sbjct: 330 LEVYVVAMDESTKKKAFAVVRDLRVNGISADMDFTGRKVKAQMKSADRKGAAFVIVIGET 389

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +   KV +K   TG +++MS +E+ +    +
Sbjct: 390 ELESGKVALKEMATGEQQEMSFDEIASNLLKK 421


>gi|229027206|ref|ZP_04183484.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228734095|gb|EEL84811.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
          Length = 101

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP ++ +I +   + V      ++  +L++ G  V  D   E++G +   A +   P  
Sbjct: 1   MAPVQVKVIPVS--NAVHVQYANEVAHKLAQAGIRVEEDIRDEKLGYKIREAQMQKVPYV 58

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +++G K +    V ++       + + L+  +        N +
Sbjct: 59  LVIGDKEMESEAVNVRKYGEEESKIVELDAFVESMKEEMKNRK 101


>gi|229013621|ref|ZP_04170752.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
 gi|228747680|gb|EEL97552.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
          Length = 476

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDRAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKYVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|326382138|ref|ZP_08203830.1| histidyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198868|gb|EGD56050.1| histidyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 423

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 138/433 (31%), Gaps = 42/433 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KGI  + P        V   +    +R G   + +P  +   L+        D   KE
Sbjct: 7   APKGIPDYFPPASADFLAVRNALTGAAHRAGYGHIELPIFEDTALFARGVGESTDVVSKE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 67  MYTFADRGGRSVTLRPEGTAGVMRAVIQHGLDRGQLPVKLCYAGPFFRYE-RPQAG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +       + RLGL    +   S       P   + 
Sbjct: 124 RQLQQVGIEAIGVDDPALDAEVIAVAD---EGYKRLGLSGYRLELTSLGDDTCRPQYREA 180

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+   D  +     ++      +  +  +  +      ++    +  A         
Sbjct: 181 LQQFLFGLDLDDATRARAEINPLRVLDDKRPEIKEATVNAPLMLDHLSESARDHFEQVRS 240

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYV 312
             D L  +  ++ R             E  H    G +  +     + G     G    +
Sbjct: 241 HLDRLGVDYVINPRLVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRQIGGKQEL 299

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +GIG  R V A+     +G  +     V  F + L  + A  ++       + A+L
Sbjct: 300 SGIGFGIGVDRTVLAL---EAEGVSVAGEGRVQVFGVPL-GVAAKSELVA-----VAAQL 350

Query: 373 SKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G  V     D G + G+    AD  G  L +++G + + +  +E+K    G +  +S
Sbjct: 351 RAAGVSVDLAYGDRGLK-GAM-KAADRSGARLALVLGDRELEERTIELKDLSNGEQRKVS 408

Query: 431 LEEVINYASHRFS 443
           L+EV+       +
Sbjct: 409 LDEVVPTVVAALA 421


>gi|229543723|ref|ZP_04432783.1| histidyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328143|gb|EEN93818.1| histidyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 427

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 142/447 (31%), Gaps = 64/447 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  +G    LP   +  + +    ++        E+  P  +  +L+ +      D 
Sbjct: 1   MTVQIPRGTQDILPGEVEKWNYIENTAKKICENYQYREIRTPIFEYTELFQKGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    DR  +++   P   E    + RS I  ++       P   Y     FR E 
Sbjct: 61  VQKEMYTFDDRGGRSLTLRP---EGTAPVVRSFI-GHKMFGNTVQPVKLYYNGPMFRYE- 115

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP+ G  R R+F+     +              +    + I+ +LGLK+  ++     +G
Sbjct: 116 RPQAG--RFRQFVQFGVEALGSEDPAIDAE---VIALAMDIYKQLGLKN--VKLVINSLG 168

Query: 204 GDLSH----------------EFIVLADTGETQ----VFCSKDFMDFP-------IPSEN 236
              S                 EF         Q    +   K   D P       I    
Sbjct: 169 DKESRLRHREALIDHFKPHIGEFCADCQKRLEQNPLRILDCKKDHDHPLMKTAPSILDYL 228

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTK 293
            D         +    T       D    +  D             E  G I     G +
Sbjct: 229 NDASKAYFDKVLQFLGTLGIPYEIDPGLVRGLDYYVHTCFEIMSNAEGFGAITTLCGGGR 288

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y+           G      +G + +   R++AA+     D +GI  P         ++ 
Sbjct: 289 YN-----GLVEEMGGPETPGIG-FALSIERLLAAL-----DAEGIELPVG-HRTDCYVVA 336

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +  + A  K+   L   G     D +G ++ +QF  AD +      ++G + +  
Sbjct: 337 IG---EETKPAAFKLLQALRSAGFSADQDYLGRKVKAQFKAADRVKAAFVAVIGEEELRA 393

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASH 440
            K  +++  TG ++++ LE  I     
Sbjct: 394 GKASVRNMATGEQKELPLEGFITAFKD 420


>gi|257052564|ref|YP_003130397.1| glycyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691327|gb|ACV11664.1| glycyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 586

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 85/571 (14%), Positives = 163/571 (28%), Gaps = 154/571 (26%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G   Q +       G Y++ P G     NV    R+    + G +E+  PT+  
Sbjct: 11  ELAKRRGFFLQSADAYGGVSGFYTFGPQGAAMKRNVEETWRDRFAIQEGHMEIDAPTVLP 70

Query: 77  ADLWV-------------------ESGRYDSYGKEMLRLADRND------------KAMI 105
             ++                    +S R D   ++     +  +            +  +
Sbjct: 71  EPVFEASGHLDGFDDMLVECPECGQSHRADHIVEDGETGIEEAESLAPERIEEVVAEYEL 130

Query: 106 YGPTHE--------EVMTDIFRSHI---------------------------KSYRNLPF 130
             PT          E    +F ++I                            +   LPF
Sbjct: 131 ACPTCGTGLAGQAIEQFNLMFETNIGPGSSSPGYLRPETAQGIFIEFPQFAEYARNQLPF 190

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF----- 185
              QI   +R+E+ PR  ++R REF   +   F + PE  +   + +     + +     
Sbjct: 191 GVTQIGRAYRNEISPRKSLLRVREFTQAELELF-VDPEEDEPDLSAVADVTAQFYPAEAQ 249

Query: 186 HRLGLKSIPM----RAESG-------------------PIGGDLSHEFIVLADTGETQVF 222
            R   + + M      E G                    IG D+          GE   +
Sbjct: 250 DRADGEPVEMTIGEAVEDGIVADPWIAYYLGVAAEWYAAIGLDMDRFRFRQHRPGELAHY 309

Query: 223 CSKDFMDF-----------PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +               I      +     L+       A +       +    +  
Sbjct: 310 SEDCWDAEGDVSDPDEDPDWIELGGFAYRADYDLSKHDAHSEAEFTIFKQYDDPVTVEQP 369

Query: 272 PENKRVSARGIEVG--------------------------HIFYFGTKYSLP-----MSA 300
             +  +   G E G                           +   G  Y++P      + 
Sbjct: 370 TVDPEMGYLGPEFGGAAGDVADALEALAEDDPDAFAGEDVTVEVDGEAYTVPVEQTGFAI 429

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLI 352
                 G+     +    +G  R +   ++ S+            +  P +VAP  + + 
Sbjct: 430 EEVTESGEHIMPHVVEPSLGIDRALYTALDHSYREDEVDGEERTYLELPPAVAPTTVGVF 489

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +   D    +   +I A L   G  V +DD G  IG ++   D +G P  V V    + 
Sbjct: 490 PLMDKD-GLGERAREIAAELRADGLAVAYDDSGA-IGRRYRRQDEVGTPYCVTVDYDTLE 547

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D  V I+ R +  +  ++ +++ +       
Sbjct: 548 DGTVTIRDRDSTDQTRVAADDLASTIEALVE 578


>gi|289581656|ref|YP_003480122.1| glycyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531209|gb|ADD05560.1| glycyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 630

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 94/578 (16%), Positives = 170/578 (29%), Gaps = 171/578 (29%)

Query: 24  KLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQS 76
           +L  R G   Q S       G Y++ P G     NV    R+      G +E+  PT+  
Sbjct: 40  ELAKRRGYFFQSSGAYGGVGGFYTFGPQGAALKGNVEDAWRDRFAVAEGNMEIDAPTIMP 99

Query: 77  ADLWVESGRYDSYGKEMLR--------------LADR---NDKAMIYGPTHEEVMT---- 115
             ++  SG  D +  +ML               + D     D   +  P  EEV+     
Sbjct: 100 EPVFEASGHLDGF-DDMLVECPECGESHRADHVVEDNTEYEDAESLPIPEVEEVIAEYEL 158

Query: 116 ------------------DIFRSHI---------------------------KSYRNLPF 130
                              +F ++I                            +   LPF
Sbjct: 159 VCPSCGAGLADQAVETFNLMFATNIGPGDSQPGYLRPETAQGIFVEFPRLKEYARNQLPF 218

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF----- 185
              QI   +R+E+ PR  ++R+REF   +   F + PE  +     +    + ++     
Sbjct: 219 GVTQIGRAYRNEISPRRSIIRTREFTQAELEYF-VDPEEDEPDLEAVADVEVTLYPAAEQ 277

Query: 186 ----HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF----------P 231
                     +I    + G IG +    F+ +A      V    D   F           
Sbjct: 278 NAADGDEIETTIGEAVDEGIIGDEWVAYFLGVAKPWYDAVGVDMDRFRFRQHLSGERAHY 337

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS-ARGIEVGHIF-- 288
                    +I      +  +          H E   D     ++    + +E   +   
Sbjct: 338 AADCWDAESEIDGNWIEMAGFAYRSDYDLSKHAEYSEDRFTVFRQYDEPKTVERATVDPD 397

Query: 289 --YFGTKY------------------SLPMSATFKGA---------------------DG 307
             Y G ++                       +  + A                     DG
Sbjct: 398 MSYLGPEFGGAAQDVVDELESLAGRDRTAFESAAQDAAEESSGDGTEPRDSDSVEIELDG 457

Query: 308 KDH---------------------YVQMGSYGIGAMRVVAAVIESSHDGKG--------I 338
           + H                        +     G  R+V  V+  ++            +
Sbjct: 458 ERHEIPVEKTGFAVEEQTEAGEHILPHVVEPSFGVDRLVYTVLHHAYAEDEVDGEERTYL 517

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                VAP  + +  ++  D+      ++I A L  VG  V +DD G  IG ++   D +
Sbjct: 518 ALDPEVAPTFVGVFPLQNDDE-LESTADEIVADLRDVGLSVTYDDSGN-IGRRYRRQDEV 575

Query: 399 GFPLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEV 434
           G P  V V  + + +    V ++ R T  ++ +S+ E+
Sbjct: 576 GTPFCVTVDYETLENEETTVTVRERDTTDQKRLSVSEL 613


>gi|71899804|ref|ZP_00681954.1| TGS [Xylella fastidiosa Ann-1]
 gi|71730395|gb|EAO32476.1| TGS [Xylella fastidiosa Ann-1]
          Length = 332

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++ + ++  LQ    DAE   H+ + +      + +   G+  W P G      +   IR
Sbjct: 228 KQLEAYMQRLQ----DAEKRDHRKIGKAQDLFHLQEEGPGLVFWHPKGWVIWQTIENYIR 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
                +G  E+  P +    LW +SG +D+Y + M    D   +     
Sbjct: 284 RVYRNSGYGELRCPQILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVN 331


>gi|229019625|ref|ZP_04176437.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1273]
 gi|229025865|ref|ZP_04182261.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228735417|gb|EEL86016.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228741673|gb|EEL91861.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1273]
          Length = 476

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMSTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   KI   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKIAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKYVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|332981512|ref|YP_004462953.1| histidyl-tRNA synthetase [Mahella australiensis 50-1 BON]
 gi|332699190|gb|AEE96131.1| histidyl-tRNA synthetase [Mahella australiensis 50-1 BON]
          Length = 420

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 135/439 (30%), Gaps = 47/439 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP        V + IR      G  E+  P  +  +L+        D 
Sbjct: 1   MVINAPRGTKDVLPDEIYKWQYVESFIRHWTALFGYKEIRTPVFEHTELFQRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ ++++   P     +   +  H       P   Y +   FR E RP+ G
Sbjct: 61  VQKEMYTFEDKGNRSITLKPEGTAGVVRAYIEHKLYAEAQPIKLYYLSPIFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R RE       SF             +    + + + LGLK + +   S       P+
Sbjct: 120 --RLREHHQFGVESFGSYGPSIDAE---IVDLAMSLLNDLGLKDLEIHINSIGCKQCRPV 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 ++  LAD    Q+  +        P    D  +      + +            
Sbjct: 175 YHKALMDY--LADR-LDQLCDTCRSRYDKNPLRILDCKEKGCQAVLTDAPDIV--DYLCD 229

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGA--------DGKDHYV 312
             +K FDS  +         E+      G  Y                      G+   +
Sbjct: 230 DCKKHFDSFQDYLSAMGYKYEIDPRIVRGLDYYTRTVFEILSTDERSPGTICGGGRYDDL 289

Query: 313 QMGS---------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                        +G+G  R++  +     D +GII P    P     + I A  +    
Sbjct: 290 VEQCGGPSIPGAGFGMGLERLLLCM-----DSQGIIIPVPKGP----DLFIAAVGEQAYH 340

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + + L K    V  D +   +  QF  AD L     +++GS  ++   V  K+  T
Sbjct: 341 YSIGLASMLRKRDISVEIDHVARSLKGQFKYADKLKAQYVLVIGSDEMASGHVSCKNMST 400

Query: 424 GIREDMSLEEVINYASHRF 442
           G  + M L+ +        
Sbjct: 401 GQEQRMELDNIAERLHSLL 419


>gi|312127540|ref|YP_003992414.1| glycyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777559|gb|ADQ07045.1| glycyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 434

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 151/479 (31%), Gaps = 117/479 (24%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S   G     + + PLG +  +N+  +  +   Q R   + +    L +
Sbjct: 10  LCKRRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMN 69

Query: 77  ADLWVESGRYDSYGK--------------------------------EML---------R 95
             +W  SG   ++                                   M           
Sbjct: 70  PKVWEASGHLSNFADPMADCKVCKKRWRVDQLQEYKCPECGGELTEARMFNLMFKTFMGP 129

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D +    +   T + +  +         + LPF   QI   FR+E+ P   + R+REF
Sbjct: 130 VEDESAVVYLRPETAQGIFVNFVNVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRTREF 189

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRI--FHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F          Y        RI  +++LG++                 E + +
Sbjct: 190 EQMEIEYFVKPG---TDEYWHKHWIEQRINWYYKLGIR----------------KENLRV 230

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            + G+ ++                      +   I   +   ++    + N   FD    
Sbjct: 231 REHGKDELA-----------------HYAKACVDIEYLFPMGWSELEGIANRTDFDLTQH 273

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                              KYS      F     + +   +     G  R + A +  ++
Sbjct: 274 ------------------QKYSGENLTYFDDETKQRYIPYVIEPSAGVDRSLLAFLIDAY 315

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + + I             ++AP K ++  +   +++ +    +IY  L      V +D+ 
Sbjct: 316 EYQQIDKDDFRVVLHLHPAIAPVKAAVFPLMKKEELVK-KAREIYNELKYKWI-VQYDES 373

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  IG ++   D +G P  + V  + + D  V I+ R T  +  + ++E+I Y   R  
Sbjct: 374 G-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVRVHIKEIIPYLEERIE 431


>gi|302871793|ref|YP_003840429.1| glycyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574652|gb|ADL42443.1| glycyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 434

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 144/479 (30%), Gaps = 117/479 (24%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S   G     + + PLG +  +N+  +  +   Q R   + +    L +
Sbjct: 10  LCKRRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMN 69

Query: 77  ADLWVESGRYDSYGK--------------------------------EML---------R 95
             +W  SG   ++                                   M           
Sbjct: 70  PKVWEASGHLSNFADPMADCKVCKKRWRTDQLQEYKCPECGGELTEARMFNLMFKTFMGP 129

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D +    +   T + +  +         + LPF   QI   FR+E+ P   + R+REF
Sbjct: 130 VEDESAVVYLRPETAQGIFVNFVNVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRTREF 189

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F                               ++  +                
Sbjct: 190 EQMEIEYF-------------------------------VKPGTDD-------------- 204

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                 +  + ++D  I           +L                  + +    +  ++
Sbjct: 205 ------YWHRHWIDQRINWYYKLGIRKENLRIREHGKNELAHYAKACVDIEYLFPMGWSE 258

Query: 276 RVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                GI     F      KYS    + F     + +   +     G  R + A +  ++
Sbjct: 259 LE---GIANRTDFDLTQHQKYSGENLSYFDDETKQRYIPYVIEPSAGVDRSLLAFLIDAY 315

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + + I             ++AP K ++  +   +++ +    +IY  L      V +D+ 
Sbjct: 316 EYQQIDKDDFRVVLHLHPAIAPVKAAVFPLLKKEELVK-KAREIYNELKYKWI-VQYDES 373

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  IG ++   D +G P  + V  + + D  V I+ R T  +  + ++E+I Y   R  
Sbjct: 374 G-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVRVHIKEIIPYLEERIE 431


>gi|229169146|ref|ZP_04296861.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH621]
 gi|228614374|gb|EEK71484.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH621]
          Length = 476

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 147/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    R+   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGSVELWQYIEGQARDICRRYNYKEIRTPMFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMSTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +              D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTTMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDRAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKYVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|55379326|ref|YP_137176.1| glycyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55232051|gb|AAV47470.1| glycyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 614

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 84/587 (14%), Positives = 160/587 (27%), Gaps = 180/587 (30%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + G +++ P G     N+    R+    + G  E+S P +    ++  SG  D +  +M+
Sbjct: 27  AAGFWTYGPQGAALKSNIEDAWRDRYVVKEGHQEISAPDVMPEPVFEASGHLDGF-DDMI 85

Query: 95  R--------------LADRNDKAMIYGPTHEEVMTDIFRSHIK------SYRNLPFTFY- 133
                          + D  D        +EEVM  I    I+      S  + P   + 
Sbjct: 86  VECGECGATHRADHLVEDNTDIEEAESLPNEEVMDLIAEHGIECPSCHTSLADQPVDNFN 145

Query: 134 ---------------------------------------------QIQLKFRDELRPRFG 148
                                                        QI   +R+E+ PR  
Sbjct: 146 LMFETNIGPGSSSPGYLRPETAQGIFVEFPQLSEYARNQLPFGVAQIGKAYRNEISPRKS 205

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----------------RLGLKS 192
           ++R REF   +   F + PE  +    ++    L ++                 R  +  
Sbjct: 206 LVRVREFTQAELEHF-IDPEEDEPPLAEVEDVVLPLYAAAEQQTDDGGQRELTVREAVDE 264

Query: 193 IPMRAESGPIGGDLSHEFIV------------LADTGETQVFCSKDFMDF------PIPS 234
             + +E       +S E+                  GE   + S  +          I  
Sbjct: 265 DIVESEWVAYYLGVSKEWYERIGVDMDRFRYRQHLAGERAHYASDCWDAESEVDGDWIEI 324

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--------- 285
               +     L+   +     Y            D    +  +S  G E G         
Sbjct: 325 TGFAYRGDYDLSKHAKHSGEDYTVFKQYDEPITVDRATVDPDMSYLGPEFGGSAGAVADA 384

Query: 286 -----------------HIFYFGTKYSLP-----MSATFKGADGKDHYVQMGSYGIGAMR 323
                             +   G  +++P      S      +G+     +     G  R
Sbjct: 385 LEALAERNPDAFDDDEVTVEVDGKSHTVPVDKTNFSVDEVTENGEHIRPHVVEPSFGVGR 444

Query: 324 VVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           ++  V+  S++           +  P   AP  + +  +   D +  D    I   L   
Sbjct: 445 IIYTVLAHSYETDEVDGEERTYLDLPPEQAPTTVGVFPLMDKDGMA-DLATDIADDLRAA 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD---------------------- 413
           G  V +DD G  IG ++   D +G P  V V  + + D                      
Sbjct: 504 GLSVTYDDSGA-IGRRYRRQDEVGTPYCVTVDYESLEDDSEAQRASDSASSAEPRSANRS 562

Query: 414 --------------SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                           V ++ R T  ++ + ++ +        + +R
Sbjct: 563 SGQSPREDGDEPRAGTVTVRERDTTEQKRLPIDGLAETLEQLSTGDR 609


>gi|261418411|ref|YP_003252093.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767630|ref|YP_004133131.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374868|gb|ACX77611.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112496|gb|ADU94988.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 426

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 146/443 (32%), Gaps = 52/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  +G    LP   +    V  + R   +R G  E+  P  +  +L++       D 
Sbjct: 1   MAFQIPRGTQDVLPGDTEKWQYVEHVARNLCSRYGYREIRTPIFEHTELFLRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +A+   P     +   F  H      + P   Y     FR E RP  
Sbjct: 61  VQKEMYTFEDKGGRALTLRPEGTAPVVRAFVEHKLYGSPHQPLKLYYSGPMFRYE-RPEA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-----------R 196
           G  R R+F+     +   +          +    + I+  LGLK I +           R
Sbjct: 120 G--RFRQFVQFGVEALGSSDPAIDAE---VMALAMHIYEALGLKRIRLVINSLGDLDSRR 174

Query: 197 AESGPIGGDLSHEFIVLAD-------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           A    +    S     L         T   ++   K   D  + +      D ++ +S  
Sbjct: 175 AHREALVRHFSSRIHELCPDCQTRLHTNPLRILDCKKDRDHELMATAPSILDYLNEDSRA 234

Query: 250 EQWTAPY-------AATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D    +  D             E  G       G +Y+    
Sbjct: 235 YFEKVKQYLTNLGIPFVIDSRLVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R++AA+     D +G+  P   +     ++ +    +
Sbjct: 291 -GLVQEIGGPETPGIG-FALSIERLLAAL-----DAEGVELPVE-SGLDCYVVAVG---E 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   ++   L + G  V  D +G ++ +Q   AD LG     I+G + +   +  +K
Sbjct: 340 RAKDEAVRLVYALRRSGLRVDQDYLGRKLKAQLKAADRLGASFVAIIGDEELERQEAAVK 399

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           H  +G + ++ L E+ ++   R 
Sbjct: 400 HMASGEQTNVPLGELAHFLHERI 422


>gi|229135227|ref|ZP_04264026.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
 gi|228648269|gb|EEL04305.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
          Length = 476

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    R+   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGSVELWQYIEGQARDICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMSTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDRAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKYVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|148643241|ref|YP_001273754.1| histidyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|261349966|ref|ZP_05975383.1| histidine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|148552258|gb|ABQ87386.1| histidyl-tRNA synthetase, HisS [Methanobrevibacter smithii ATCC
           35061]
 gi|288860749|gb|EFC93047.1| histidine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 431

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 141/436 (32%), Gaps = 44/436 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
            +G   +L    +      +I+R         E+  P  +   L+  +SG  +    ++ 
Sbjct: 6   PRGTRDFLFDEMRERKKAESILRNVFENYAYQEIKTPLFEELKLFTTKSG--EEIVDQLY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D++D+ +   P     +  ++ + ++   + P   Y     FR E RP+ G  R R+
Sbjct: 64  NFKDKSDRELTLRPEITAPVARLYLNELQKTASKPIKLYYYGSCFRYE-RPQKG--RFRQ 120

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSH----- 208
           F               +     M         +LG+    +     G I G   H     
Sbjct: 121 FWQFGCELIGAKSPQGEAEVIAMC---SESIEKLGIPGADVNINHLGIIRGLFKHFNIDT 177

Query: 209 ----EFIVLADTGETQVFCSKDFMDFPI------PSENTDFDDIISLNSIVEQWTAPYAA 258
               E +V+ D G+  +       + PI              D++   SI++      A 
Sbjct: 178 ATQREVMVVIDKGDKDLLKESLTGENPIIDNEELNHVLFKLIDMVGDKSIIKDIEELVAP 237

Query: 259 TSDVHNE--------KLFDSLPENKRVSARGIEVGHIFYFGTKY-----SLPMSATFKGA 305
             + H+             S          G+  G  +Y G  +     SL       G 
Sbjct: 238 YPESHDALNELEELIDTLASFKMENYTLNLGVARGLDYYTGIVFEVYIPSLGAQKQVCGG 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV-APFKISLINIKAHDQVCRDA 364
                    G   + +           +  + +  P+ +  P  I +  I       R  
Sbjct: 298 GTYSLIKIFGGEEVVSTGFAFGFDRLMNAIEELATPEELPCPIDIYVAPISDD---VRLK 354

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQF-AVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +I   L   G     D  G++   +    A+ +      I+G+K + ++++ IK+  +
Sbjct: 355 AYEITQTLRSAGIACDVDLNGKKF-KKIMNHANKIKVKQVAIIGAKDLENNQITIKNMES 413

Query: 424 GIREDMSLEEVINYAS 439
           G +E + L+ V+ Y  
Sbjct: 414 GNQELVDLDNVVEYIK 429


>gi|326794213|ref|YP_004312033.1| glycyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326544977|gb|ADZ90197.1| glycyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 458

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 81/484 (16%), Positives = 152/484 (31%), Gaps = 103/484 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I Q S      +G Y + PLG +  +N+           R     +    +Q+
Sbjct: 12  LCKRRGFIFQGSEIYGGMQGAYDYGPLGTELKNNLKNAWWRAMVYERDDVEGLDAAIIQN 71

Query: 77  ADLWVESGRYDSYGK--------------------------------------EMLRL-- 96
             ++  SG  D++                                         M +   
Sbjct: 72  KHVYKYSGHEDTFTDPMVDCHECKSRMRADHMKDIKKCDNCGSDNVTEPRDFNLMFKTNV 131

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSR 153
                 D      P   + +   F++ + S  R LPF   QI   FR+E+ PR  + R R
Sbjct: 132 GPMVNEDSYTYLRPETAQGIFTNFKNVVDSTSRALPFGIAQIGKSFRNEITPRNFIFRVR 191

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIV 212
           EF   +   F    E  K             +H   +++      + G    ++  E++ 
Sbjct: 192 EFEQMELEFFCKPGEDEK-------------WHDFWVETRKQWWLDQGLTEENIQFEYV- 237

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              TG+     SK  +D                          Y   S    ++ FD   
Sbjct: 238 ---TGDDLAHYSKSTVDILYK------FPHGFEELEGVANRTDYDLGSHTKAQEEFDLSA 288

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K+                  S    A       K           G  R + A++  +
Sbjct: 289 KVKKNEH---------------STAKLAVRDLEANKWEVPFCIEPSAGLDRGMLAIMTEA 333

Query: 333 HDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWD 382
           +  + +          +   +AP K++++ +K +        +++  +L K+G   + ++
Sbjct: 334 YTEEELENGSTRTVLKFKPHLAPIKVAILPLKKNKPEIVALAKELKNKLQKLGLGRILYE 393

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK--VEIKHRLTGIREDMSLEEVINYASH 440
           + G  +G  +   D +G PL V V    +      V ++ R T  +  +   E+  Y  +
Sbjct: 394 NTGN-VGKGYRRHDEVGTPLCVTVDFDSIEKDDAPVTVRDRDTMEQVAIPAAELPAYIIN 452

Query: 441 RFSN 444
            F N
Sbjct: 453 YFVN 456


>gi|330840876|ref|XP_003292434.1| hypothetical protein DICPUDRAFT_157146 [Dictyostelium purpureum]
 gi|325077326|gb|EGC31046.1| hypothetical protein DICPUDRAFT_157146 [Dictyostelium purpureum]
          Length = 686

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 143/435 (32%), Gaps = 85/435 (19%)

Query: 93  MLRLA--DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           M +       +      P T + +  +  + +  + + LPF   QI   FR+E+ PR G+
Sbjct: 235 MFKTEIGPSGNNPGYLRPETAQGIFVNFAKLYEFNGKKLPFAAAQIGNAFRNEIAPRSGL 294

Query: 150 MRSREFLMKDAYSFDLTPE-------------------GSKHSYNKMFV----------- 179
           +R REF M +   F    E                    ++ +  ++             
Sbjct: 295 LRVREFTMAEIEHFVNPNEKTHPKFQEVANDKVFLLSSEAQDTTKEIIETTFGDAVSKGL 354

Query: 180 ------SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFPI 232
                 +Y     +L L ++ ++           +E    A D  + ++  +  +++  +
Sbjct: 355 IDNETLAYFMARTQLFLHTVGIKPAGLRFRQHQRNEMAHYAKDCWDAEILTTYGWIEC-V 413

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE------VGH 286
              +    D+    +  +     Y    D         +   K++  +  +      + +
Sbjct: 414 GHADRSCYDLTVHANESKANLTVYEEFKDGPKMIDIAVIDVKKQLMGKQFKQAAKAPMEY 473

Query: 287 IFYFGTKYSLPMSAT---------FKGADGKDH---------------------YVQMGS 316
           +     K    M                DG++                      Y  +  
Sbjct: 474 LAGLKDKVDEAMQIQEALNTTGSYVLNIDGQEFTLTKEMVTITKGQEKKSGKNYYPHVIE 533

Query: 317 YGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              G  R++ A++E ++      + +G++  P  +AP K S++ +  + +       KI 
Sbjct: 534 PSFGLGRIIYALLEQNYWTRENDEQRGVLSLPAIIAPVKASILPLT-NSEKLVPFVAKIS 592

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G     DD G  IG ++A  D +G P  + +    V D  V ++ R T  +  +
Sbjct: 593 KLLKEAGISTKLDDTGNAIGRKYARTDEIGIPFGITIDFTTVEDETVTLRERDTTKQIRI 652

Query: 430 SLEEVINYASHRFSN 444
            + ++         N
Sbjct: 653 PITDLALTLKKLCDN 667



 Score = 45.3 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 9   PILQENPRDAEIASH---KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIRE 59
           P L++N  + E   +   +LM R   I           G+Y + P G     N+    R+
Sbjct: 62  PNLEKNMENKEKIRNGLEELMKRRFFITPAFQIYRGVAGLYDYGPPGCAVKANLINYWRQ 121

Query: 60  EQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
                    E+   ++    +   SG    +      + D 
Sbjct: 122 HFVLNEDMSEVDCTSVTPEIVLKTSGHVAKFSD--FMVKDE 160


>gi|302339640|ref|YP_003804846.1| glycyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636825|gb|ADK82252.1| glycyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 443

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 72/487 (14%), Positives = 150/487 (30%), Gaps = 121/487 (24%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G ++Q S       G + + PLG +  + V      E  +     + +    +  
Sbjct: 15  LCKRRGFVYQSSEIYGGLSGAWDYGPLGVELKNRVKDYWWREMTQLHDNIVGLDAAIMMH 74

Query: 77  ADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEV------------MTDIFRSH 121
             +W  SG  D++   ++   +   R     I       V               +F +H
Sbjct: 75  PRVWEASGHVDNFSDPLVDCKQCKSRFRADQIDLEAPCPVCGNSGTFTEPRDFNLMFATH 134

Query: 122 IKSYRN-----------------------------LPFTFYQIQLKFRDELRPRFGVMRS 152
           I   ++                             +PF   Q+   FR+E+  +  + R+
Sbjct: 135 IGPVKDDGSIVYLRPETAQGIFVNFRNVVQTSRVKIPFGIAQVGKAFRNEVTTKNFIFRT 194

Query: 153 REFLMKDAYSFDLTPEGSK--HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            EF   +   F    E  K    +    +SY   + +LG++   +R             F
Sbjct: 195 CEFEQMEMQFFVKPGEDDKWFEFWKNERISY---YDKLGIRKEKLR-------------F 238

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               +            +++  P    + + I S         A Y+             
Sbjct: 239 HRHGENELAHYAKDAFDIEYEFPMGWQELEGIHSRTDFDLSRHAEYSGK----------- 287

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                                         T+   D   +   +     G  R V  V+ 
Sbjct: 288 ----------------------------DLTYLDDDKSRYIPYVIETSAGLTRSVLMVLS 319

Query: 331 SSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            +++ + +          +  S+AP  ++++ +   D +  +  + + + L +    VF+
Sbjct: 320 DAYEEEELEGGDIRTVLHFHPSLAPVTVAVLPLVKKDGIA-EIAQGVASDLREE-FAVFY 377

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G  IG ++   D +G P  V +      D  V ++ R +  +  + ++E+ +     
Sbjct: 378 DQSGA-IGRRYRRMDEIGTPFCVTIDYDTKEDKTVTLRFRDSMEQVRVPIDELTSRIRAE 436

Query: 442 FSNNRPV 448
             N R V
Sbjct: 437 IKNYRRV 443


>gi|225550213|ref|ZP_03771173.1| glycyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|225369325|gb|EEG98778.1| glycyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 445

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     I    +                  +F++H
Sbjct: 70  PEIWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEVYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +  +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKISPDR--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       +   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKAAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             K  +   +   H F    KY        + + G    V M      +        E  
Sbjct: 277 HAKFSNKPKVFEYHDFLTKEKYVP---YVIETSAGLTRSVLMTLCDAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELT-EIARRIYMELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V +    + D  V ++ R +  ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNSMTQKRIFINDLYSYIKTEILNYKE 441


>gi|297566580|ref|YP_003685552.1| glycyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296851029|gb|ADH64044.1| glycyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 507

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 118/379 (31%), Gaps = 69/379 (18%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRF 147
           M +         D      P   + +   F++ + S  R LPF   QI   FR+E+ PR 
Sbjct: 170 MFKTTIGPVADEDSYGYLRPETAQGIFVNFKNVLDSTSRRLPFGIAQIGKAFRNEITPRN 229

Query: 148 GVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            + R REF   +   F    T E                                     
Sbjct: 230 FIFRVREFEQMEIEYFVKPGTDEHWHQ--------------------------------- 256

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             H      +  E Q           +P E+       + + +    T  +     + N 
Sbjct: 257 --HWLETRLEWWEAQGIPRAQIQVLDVPKEDLAHYSKRTYDLLYNFPTLGFEEIEGIANR 314

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             +D     K  S  GI+   +       S    A      GK     +     G  R V
Sbjct: 315 SDYDLGSHTKAQSELGIQARVMENTD---STAKLAIQDPETGKWIVPFVIEPSAGVDRGV 371

Query: 326 AAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            AV+  ++  + +              +AP K+++I +  + +      + +  +L  +G
Sbjct: 372 LAVLSEAYTREKLESGEERIVLKLKPHLAPIKVAVIPLAKNKEEITRYAKDLKRKLQALG 431

Query: 377 C-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-----GSKFVSDS------KVEIKHRLTG 424
              V ++D G  IG  +   D +G P  V V     G     D        V ++ R T 
Sbjct: 432 MGRVLYEDTGN-IGKAYRRHDEVGTPFCVTVDYDTIGKS--QDGSTTLMDTVTVRDRDTM 488

Query: 425 IREDMSLEEVINYASHRFS 443
            +E + ++E+  Y   R  
Sbjct: 489 QQERVHVKELPQYLQERLR 507


>gi|51598627|ref|YP_072815.1| glycyl-tRNA synthetase [Borrelia garinii PBi]
 gi|59798510|sp|Q661P8|SYG_BORGA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|51573198|gb|AAU07223.1| glycyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 445

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 149/478 (31%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+ +   +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKSEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     I    +                  +F++H
Sbjct: 70  PEIWRASGHIDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEIYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +R +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKIRPDK--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       S   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKSAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +K  +   I   H      +Y        + + G    V M      +        E  
Sbjct: 277 HSKFSNNPKIFEYHDLLTKERYVPH---VIETSAGLTRSVLMTLCNAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EIARRIYIELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V V    + D  V ++ R    ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTVDYSTIEDETVTVRERNNMTQKRIFINDLYSYIKTEILNYKE 441


>gi|312128271|ref|YP_003993145.1| histidyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778290|gb|ADQ07776.1| histidyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 421

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 136/432 (31%), Gaps = 35/432 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE     G  E+  PT +  +L+        D   K
Sbjct: 4   QAPKGTKDVLPEESYMWQYVENKFREVCKLYGYQEVRFPTFEYTELFQRGVGETTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P        +F  H  + R +P  FY I   FR E     G  R
Sbjct: 64  EMYTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYE--NTQG-GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHE 209
            REF      +F  +   +      +       F  +GL +I +   S   P+      +
Sbjct: 121 FREFHQFGIENFGSSSPVTDAE---VISLAYNFFTSIGLDNITVNINSIGCPVCRKEYVK 177

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI---VEQWTAPYAATSDVHNEK 266
            +    +  +Q  C+                       +     +           H E 
Sbjct: 178 NLKEYFSANSQKLCTTCHQRLDKNPMRILDCKEEGCKLVAKDAPKPIDYLCDDCKSHFES 237

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------GKDHYVQMGSYGIG 320
           +   L   K +      +     + TK    + AT    +      G+   +     G  
Sbjct: 238 VKTYLDSAKVLYKVDPFIVRGLDYYTKTVFEIVATVSDKELAICGGGRYDNLIEQIGGNS 297

Query: 321 A--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                    +  +  ++E +      + P   A  ++  + +    +       +I +RL
Sbjct: 298 IPGIGFAIGVERLLMLLEQNG-----LLP---AKPRVPEVFVATVGENSLKKAFEIASRL 349

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     ++MG  + SQ   AD +G    +I+G   ++    +I++  T   E + +E
Sbjct: 350 RFEGISTIIEEMGRSLKSQMKYADKIGCQFSIIIGDDEITKGVCKIRNMKTSSEEIVEIE 409

Query: 433 EVINYASHRFSN 444
            V  Y   +   
Sbjct: 410 NVCQYLKEKLQK 421


>gi|312135208|ref|YP_004002546.1| glycyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311775259|gb|ADQ04746.1| glycyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 434

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 74/479 (15%), Positives = 146/479 (30%), Gaps = 117/479 (24%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S   G     + + PLG +  +N+  +  +   Q R   + +    L +
Sbjct: 10  LCKRRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMN 69

Query: 77  ADLWVESGRYDSYGK--------------------------------EMLRLA------- 97
             +W  SG   ++                                   M  L        
Sbjct: 70  PKVWEASGHLSNFADPMADCKVCKKRWRTDQLQEYKCPECGGELTEARMFNLMFKTFMGP 129

Query: 98  -DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            +     +   P T + +  +         + LPF   QI   FR+E+ P   + R+REF
Sbjct: 130 VEEESAVVYLRPETAQGIFVNFVNVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRTREF 189

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                       E  +  Y                    ++  +                
Sbjct: 190 ------------EQMEIEY-------------------FVKPGTDD-------------- 204

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                 +  + ++D  I           +L                  + +    +  ++
Sbjct: 205 ------YWHRHWIDQRINWYYKLGIRKENLRIREHGKDELAHYAKACVDIEYLFPMGWSE 258

Query: 276 RVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                GI     F      KYS      F     + +   +     G  R + A +  ++
Sbjct: 259 LE---GIANRTDFDLTQHQKYSGENLTYFDDETKQRYIPYVIEPSAGVDRSLLAFLIDAY 315

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + + I             ++AP K ++  +   +++ +   ++IY  L      V +D+ 
Sbjct: 316 EYQQIDKDDFRVVLHLHPAIAPIKAAVFPLLKKEELVK-KAKEIYNELKYKWI-VQYDES 373

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  IG ++   D +G P  + V  + + D  V I+ R T  +  + ++E+I+Y   R  
Sbjct: 374 G-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVRVHIKEIISYLEERIE 431


>gi|52081235|ref|YP_080026.1| histidyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786615|ref|YP_092444.1| histidyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319644798|ref|ZP_07999031.1| histidyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|81690957|sp|Q65GR3|SYH_BACLD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52004446|gb|AAU24388.1| histidyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349117|gb|AAU41751.1| HisS [Bacillus licheniformis ATCC 14580]
 gi|317392607|gb|EFV73401.1| histidyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 424

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 142/443 (32%), Gaps = 58/443 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M     +G    LP   +    V  I RE  +     E+  P  +  +L+        D 
Sbjct: 1   MGFNIPRGTQDILPGESERWQYVEKIARETCHAYQYKEIRTPIFEHTELFSRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS----YRNLPFTFYQIQLKFRDELR 144
             KEM   AD+  +++   P   E      RS +++        P   Y I   FR E R
Sbjct: 61  VQKEMYTFADKKGRSLTLRP---EGTASAVRSFVENKLFANPVQPTKLYYIGPMFRYE-R 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P+ G  R R+F      +              +    + ++ + GL ++ +   S  +G 
Sbjct: 117 PQTG--RYRQFYQFGIEAIGSNDPAIDAE---VIALAMSVYRKAGLSNLKLVINS--LGD 169

Query: 205 DLS----------------HEFIVLADTGETQ----VFCSKDFMDFPIPSENTDFDDI-I 243
             S                 EF         Q    +   K   D  +        D   
Sbjct: 170 KESRTAHREALIRHFEPRIDEFCSDCQKRLRQNPLRILDCKKDRDHELLKTAPSILDYLN 229

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATF 302
             +         Y     +  E   + +      +    E+  +   FG   +L     +
Sbjct: 230 EESKAYFAKVQQYLTDIGIAFEVDPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRY 289

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKA 356
            G     G      +G + +   R++AA+   +      +GI            ++ +  
Sbjct: 290 DGLTEEFGGPKAPGIG-FAMSIERLLAALDAENVKVGADEGI---------DCYIVTLGD 339

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D    +  +L + G     D   +++  QF  AD L      ++G   ++ +++
Sbjct: 340 K---AKDYSVSLLYKLREAGISAEIDYEQKKMKGQFKSADRLNAKYIAVLGEDELNQNQI 396

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            +K   TG ++ + L++ I +  
Sbjct: 397 NVKDGKTGDQQAIGLDDFIRFLK 419


>gi|227504994|ref|ZP_03935043.1| histidyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198358|gb|EEI78406.1| histidyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 426

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 140/432 (32%), Gaps = 40/432 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V   +  + + +G   + +P  +   L+        D   KE
Sbjct: 12  APKGVPDYIPPQSATFYKVRENLVHQAHLSGFQHIELPIFEDTTLFARGVGESTDVVSKE 71

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR D+++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 72  MYTFADRGDRSVTLRPEGTAGVMRSVIEHNLDRGQLPVKLNYFGPFFRYE-RPQAG--RY 128

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R F  LGL    +   S       P   + 
Sbjct: 129 RQLQQVGVEAIGVDDPALDAEIIALAD---RSFRSLGLSKFRLELTSLGDHNCRPAYREK 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+   D  E     ++      +  +  +  + +    ++         T       
Sbjct: 186 LQDFLFKLDLDEETRKRAQINPLRVLDDKRPEVQEQLVDAPLMLDHLNEECRTHFETVTG 245

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
           L D +     ++ R             E  H    G +  +     + G  A      + 
Sbjct: 246 LLDDMGIEYTINPRMVRGLDYYTKTCFEFVHP-LLGAQSGIGGGGRYDGLMAQLGGQELS 304

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              YG+G  R + A+     +  G+     VA F ++L      D   R A   I   L 
Sbjct: 305 GIGYGLGVDRTILALEAEGIELDGV--DQRVAVFGVAL----GADAKRRMAG--IINDLR 356

Query: 374 KVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G      + D G + G+    AD  G    +++G + + +  V +K      + D+++
Sbjct: 357 NAGISADMSFGDRGLK-GAM-KGADRAGARFALVLGEQELENGVVAVKDLAAHEQNDVAI 414

Query: 432 EEVINYASHRFS 443
           + ++ +  ++ +
Sbjct: 415 DALVEHLRNQLN 426


>gi|222151515|ref|YP_002560671.1| histidyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|254782335|sp|B9E707|SYH_MACCJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222120640|dbj|BAH17975.1| histidyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 420

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 143/447 (31%), Gaps = 63/447 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP        V + +          E+  P  +S DL+     G  D 
Sbjct: 1   MMINIPRGTQDILPAETAKWRYVESKLHNIAANYNYKEIRTPMFESTDLFARGVGGSTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ D+++   P   E    + RS+I++  N     P   Y     FR E +
Sbjct: 61  VQKEMYTFKDKGDRSLTLRP---EGTAAVVRSYIENKMNGDANQPVKLYYNGPMFRYERK 117

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F+     +              M      I+   GLK I +   S  IG 
Sbjct: 118 QK---GRYRQFVQFGVEAIGSENPAIDAEVIHMV---YNIYKSFGLKHIKIVLNS--IGD 169

Query: 205 DLSHEFIVLA--------------------DTGETQVFCSKDFMDFP-------IPSENT 237
             S E    A                     T   ++   K   + P       I     
Sbjct: 170 MDSREEYKQALIEHFEPHINNFCNDCKNRLHTNPMRILDCKVDHEQPTVKTAPKITEYLN 229

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKY 294
           D+                     D    +  D             E  G I     G +Y
Sbjct: 230 DYSKNYYEEVKQYLDLLNIPYIEDASLVRGLDYYTHTAFEVMSEAEGFGAITTLCGGGRY 289

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +  +       DG         + +   R++ A+     +   +   +SV    I ++ +
Sbjct: 290 NGLLEML----DGPKETGI--GFALSIERLLLAI---EAEDIQLDVEESV---DIFVVTM 337

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +  ++A  KI A L   G     D +G ++  Q   AD +     V++GS  +  +
Sbjct: 338 P---ETVKEAV-KIVAELRNAGIRCDMDYLGRKMKGQMKQADRIHATYTVVLGSNEIETN 393

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
           K++IK   TG  E + L+++ +Y    
Sbjct: 394 KIQIKAMQTGESETIKLQDIASYIKGE 420


>gi|237842799|ref|XP_002370697.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968361|gb|EEB03557.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 1223

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 96/314 (30%), Gaps = 61/314 (19%)

Query: 126  RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            R+LP    +    FR E R    G+ R REF   D +    T E +         S L +
Sbjct: 908  RHLPLRISEFGRVFRRERRSALCGLFRLREFTQDDGHIL-CTREQAVEEIKVQLASILHL 966

Query: 185  F-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +    G+    ++   G      S      AD+ E +   ++        +         
Sbjct: 967  YVQVFGISPEGVKVSLGSRPAKASRRSDASADS-EDEKLWTQAEAWLLEAARE------- 1018

Query: 244  SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                            S V  E+   +    K   +     G  +  GT   L +     
Sbjct: 1019 -----------VLPNASSVETEEGGGAFYGPKLDFSLSDVQGRWWQTGTLQPLVL----- 1062

Query: 304  GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                      +    +G++    A++    +G   +W   +AP K  +  +    +  R+
Sbjct: 1063 ----------IHRAAVGSLERFLALLLELRNGDLPVW---LAPVKAVVCPVSVQSREIRE 1109

Query: 364  ACEKIYARLSK----VGCD------------VFWDDMGEQIGSQFAVADLLG---FPLQV 404
              E++   L +     G              VF D     + ++     LLG    PL  
Sbjct: 1110 YAERVATVLRESVAPSGFSAEKEGSEDTATGVFVDLRPLHLNTKLKD--LLGRRRIPLLF 1167

Query: 405  IVGSKFVSDSKVEI 418
            +VG +     +V +
Sbjct: 1168 LVGPRDEKAGRVTV 1181



 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 19  EIASHKLMLRTGMIHQHSKGI------YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E   H+ + R   +               +LP G++ L N+ +++ + Q      ++  P
Sbjct: 699 ERKDHRELGREMGLFVLPPASDVGAVGPVFLPEGRQLLANLKSVLAQHQRLLQFQQVETP 758

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA----DRNDKA 103
           +L  + LW  SG +  Y + M  ++    D   + 
Sbjct: 759 SLAQSGLWRRSGHWTHYRENMWTVSASPRDEEKEK 793


>gi|227830722|ref|YP_002832502.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|229579616|ref|YP_002838015.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|229581718|ref|YP_002840117.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284998235|ref|YP_003420003.1| Anticodon-binding domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227457170|gb|ACP35857.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|228010331|gb|ACP46093.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|228012434|gb|ACP48195.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284446131|gb|ADB87633.1| Anticodon-binding domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 386

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 296 LPMSATFKGADGKDHYVQMG--SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           L        +  +     +      +   R+V   I  S   +    PD + P ++ L+ 
Sbjct: 223 LDFPKEIIDSKNRIKVWWVNESRTYVDVGRLVYYFILESIRKQPPTLPDWLNPIQVRLLP 282

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +K       D   ++  RL K G  V  DD+ + +G++   A     P  +I+G + V  
Sbjct: 283 VKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTEWIPFVIIIGEREVKT 339

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           S + +K R    ++ MS+EE++          + +
Sbjct: 340 STLTVKIRANNEQKSMSVEELVKEIKDEVKERQNL 374


>gi|146296961|ref|YP_001180732.1| glycyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410537|gb|ABP67541.1| glycyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 434

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 151/479 (31%), Gaps = 117/479 (24%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S   G     + + PLG +  +N+  +  +   Q R   + +    L +
Sbjct: 10  LCKRRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMN 69

Query: 77  ADLWVESGRYDSYGK--------------------------------EML---------R 95
             +W  SG   ++                                   M           
Sbjct: 70  PKVWEASGHLSNFADPMADCKVCKKRWRADQLSEYKCPECGGELTEARMFNLMFKTFMGP 129

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D +    +   T + +  +         + LPF   QI   FR+E+ P   + R+REF
Sbjct: 130 VEDESAVVYLRPETAQGIFVNFLNVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRTREF 189

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRI--FHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F          Y        RI  +++LG+K                 E I +
Sbjct: 190 EQMEIEYFVKPG---TDEYWHKHWIEQRINWYYKLGIK----------------KENIRI 230

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            + G+ ++                      +   I   +   ++    + N   FD    
Sbjct: 231 REHGKDELA-----------------HYAKACVDIEYLFPMGWSELEGIANRTDFDLSRH 273

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                              +YS      F     + +   +     G  R   A +  ++
Sbjct: 274 ------------------QEYSGQNLTYFDDETKQRYIPYVIEPSAGVDRSFLAFLVDAY 315

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + + I             ++AP K  +  +   +++ +   ++IY  L      V +D+ 
Sbjct: 316 ENQKIDENDSRIVLHLHPAIAPVKAGVFPLLKREELVK-KAKEIYNNLKYKWI-VQYDES 373

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  IG ++   D +G P  + V  + + D+ V I+ R T  +  + +EE+I Y   +  
Sbjct: 374 G-SIGKRYRRQDEIGTPFGITVDYQTLEDNTVTIRDRDTMEQVRVHIEEIIPYLEEKIE 431


>gi|255027747|ref|ZP_05299733.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 90

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 59/90 (65%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGP 108
            L  +  IIREE    GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GP
Sbjct: 1   MLRKIETIIREELEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGP 60

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           THEEV+T + R  +KSY+ LP T YQIQ K
Sbjct: 61  THEEVITALLRDEVKSYKRLPLTLYQIQTK 90


>gi|56963341|ref|YP_175072.1| histidyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|81678918|sp|Q5WHP4|SYH1_BACSK RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|56909584|dbj|BAD64111.1| histidyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 426

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 56/443 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP        +  + +E        E+  P  +  +++        D   K
Sbjct: 4   QLPRGTQDILPDDAAIWQYIEQVAKETCETYHYQEIRTPIFEHTEIFSRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM   +DR  +++   P     +        + +    P   Y     FR E RP+ G  
Sbjct: 64  EMYTFSDRGGRSLTLRPEGTAAVVRSYVNHKLYASPAQPTKLYYTGPMFRYE-RPQAG-- 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS--- 207
           R R+F+     +              + ++   I  +LGL ++ +   S  +G   S   
Sbjct: 121 RMRQFVQFGVEALGSASPQLDAEVLALLIA---ICKKLGLVNLKLVINS--LGDSESRQA 175

Query: 208 -------------HEFI----VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                         EF     +  +    ++   K   + P+ +      D ++  S   
Sbjct: 176 HREALIAHFKPSIDEFCSDCQMRLEKNPLRILDCKKDREHPLMATAPSILDYLNEESRAY 235

Query: 251 QWTAPYA-------ATSDVHNEKLFDSLPENKRV-SARGIEVGHIFYF--GTKYSLPMSA 300
             +              D    +  D          +     G I     G +Y+     
Sbjct: 236 FQSLKETLDLLNIPYVVDPTLVRGLDYYNHTAFELLSTAPGFGAITTLCGGGRYN----- 290

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G      +G +     R + A+   + D   +  P S+  + ++L      D+ 
Sbjct: 291 GLVQEFGGPETPGIG-FAFSIERFILAMKAENVD---LPVPQSLDAYVVTL-----GDEA 341

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R    ++  RL   G     D +G+++ +Q   AD       +I+G   ++  +  +K 
Sbjct: 342 SR-LGPQLLQRLRDGGIRADKDYLGKKMKAQLKAADRYQASYTIIIGEDEIAKQQALVKQ 400

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             TG +  +++ ++ ++   +  
Sbjct: 401 MATGEQTVVAISDLTSFLQEQIR 423


>gi|229585254|ref|YP_002843756.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238620213|ref|YP_002915039.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.4]
 gi|228020304|gb|ACP55711.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238381283|gb|ACR42371.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 386

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 296 LPMSATFKGADGKDHYVQMG--SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           L        +  +     +      +   R+V   I  S   +    PD + P ++ L+ 
Sbjct: 223 LDFPKEIIDSKNRIKVWWVNESRTYVDVGRLVYYFILESIRKQPPTLPDWLNPIQVRLLP 282

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +K       D   ++  RL K G  V  DD+ + +G++   A     P  +I+G + V  
Sbjct: 283 VKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTEWIPFVIIIGEREVKT 339

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           S + +K R    ++ MS+EE++          + +
Sbjct: 340 STLTVKIRANNEQKSMSVEELVKEIKDEVKERQNL 374


>gi|224532290|ref|ZP_03672922.1| glycyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511755|gb|EEF82161.1| glycyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 445

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 148/478 (30%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
           +++W  SG  D +   M+   D   R     I    +                  +F++H
Sbjct: 70  SEIWKASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTAPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEIYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +R +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKIRPDR--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       S   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKSAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +K  +   I   H      +Y        + + G    V M      +        E  
Sbjct: 277 HSKFSNKPKIFEYHDLLTKERYVP---YVIETSAGLTRSVLMTLCDAYSE-------EKL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD    IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKIELI-EIARRIYMELCD-DFHIFYDD-NGTIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V V    V D  V I+ R    ++ + + ++ ++      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTVDYNTVEDKTVTIRERNNMTQKRIFINDLYSHIKTEILNYKE 441


>gi|146295715|ref|YP_001179486.1| histidyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166227954|sp|A4XHB0|SYH_CALS8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145409291|gb|ABP66295.1| histidyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 419

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 134/434 (30%), Gaps = 43/434 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V +  R+     G  E+  PT +  +L+        D   K
Sbjct: 4   QAPKGTKDVLPEESYIWQYVESKFRQICKLYGYQEVRFPTFEYTELFQRGVGETTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P     +  +F  H  + R +P   Y I   FR E     G  R
Sbjct: 64  EMYTFLDKGGRSITLRPEGTASVARLFIEHGFASRPMPQRLYYIISAFRYE--NTQG-GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF      +F      +      +       F  LGL +I +   S  IG  +  +  
Sbjct: 121 YREFHQFGIENFGSKSPVTDAE---IISLSYNFFVSLGLDNIVVNINS--IGCPVCRKDY 175

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-------------APYAA 258
           V       + F        P   +  D + +  L+   +                     
Sbjct: 176 V---KNLKEYFLGYYDKLCPTCKQRLDKNPMRILDCKEDNCKLIAQDAPKPIEYLCDECK 232

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-----GKDHYVQ 313
           T     +   D+     +V    I  G  +Y  T+    +       +     G  +   
Sbjct: 233 THFEALKGYLDAAGVCYKVDPY-IVRGLDYY--TRTVFEIVDVVLDKELAICGGGRYDNL 289

Query: 314 MGSYGIGAMRVVAAVI-----ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +   G  +   +   I           KG+I        ++  + I     +      +I
Sbjct: 290 IEQIGGSSTPGIGFAIGVERLIMLLSQKGLIPQKP----QVPQVFIATLGDLATKKAFEI 345

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            + L   G     +++   + SQ   AD LG    VI+G   +     +++   T   E 
Sbjct: 346 ASTLRFEGISTVIEELSRSLKSQMKYADKLGCDFAVIIGDDELEKGVCKVREMKTSSEEV 405

Query: 429 MSLEEVINYASHRF 442
           + +E +  +   + 
Sbjct: 406 VRIEGLAQHIKSKI 419


>gi|15457932|gb|AAK99176.1| Seryl-tRNA synthetase [Streptococcus pneumoniae R6]
          Length = 445

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 362 PAQNNYREISSCSNTEDFQARRAQIRYRD 390


>gi|227827985|ref|YP_002829765.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.14.25]
 gi|227459781|gb|ACP38467.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.14.25]
          Length = 386

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 296 LPMSATFKGADGKDHYVQMG--SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           L        +  +     +      +   R+V   I  S   +    PD + P ++ L+ 
Sbjct: 223 LDFPKEIIDSKNRIKVWWVNESRTYVDVGRLVYYFILESIRKQPPTLPDWLNPIQVRLLP 282

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +K       D   ++  RL K G  V  DD+ + +G++   A     P  +I+G + V  
Sbjct: 283 VKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTEWIPFVIIIGEREVKT 339

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           S + +K R    ++ MS+EE++          + +
Sbjct: 340 STLTVKIRANNEQKSMSVEELVKEIKDEVKERQNL 374


>gi|306828941|ref|ZP_07462133.1| serine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304429119|gb|EFM32207.1| serine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 424

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|33322995|gb|AAQ07234.1|AF496542_1 threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 107

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +     +++   G   +  P L + D +  SG +D Y ++M    
Sbjct: 1   GLPYWMPKGATIRRIIERYXXDKEVAAGXXHVYTPVLMNLDAYKTSGHWDHYREDMFPPM 60

Query: 98  DRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           D  +  M+   P +      I++ HI+SYR LP    ++ +  R 
Sbjct: 61  DMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRY 105


>gi|194397764|ref|YP_002037092.1| seryl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|238690854|sp|B5E7F2|SYS_STRP4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194357431|gb|ACF55879.1| seryl-tRNA synthetase [Streptococcus pneumoniae G54]
          Length = 424

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|312622367|ref|YP_004023980.1| glycyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202834|gb|ADQ46161.1| glycyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 434

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 74/479 (15%), Positives = 141/479 (29%), Gaps = 117/479 (24%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S   G     + + PLG +  +N+  +  +   Q R   + +    L +
Sbjct: 10  LCKRRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMN 69

Query: 77  ADLWVESGRYDSYGK--------------------------------EML---------R 95
             +W  SG   ++                                   M           
Sbjct: 70  PKVWEASGHLSNFADPMADCKICKKRWRVDQLQEYKCPECGGELTEARMFNLMFKTFMGP 129

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D +    +   T + +  +         + LPF   QI   FR+E+ P   + R+REF
Sbjct: 130 VEDESAVVYLRPETAQGIFVNFVNVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRTREF 189

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F                                       G D          
Sbjct: 190 EQMEIEYFV------------------------------------KPGTDEYW------- 206

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                    K +++  I           +L                  + +    +  ++
Sbjct: 207 --------HKHWIEQRINWYYNLGIRKENLRVREHGKDELAHYAKACVDIEYLFPMGWSE 258

Query: 276 RVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                GI     F      KYS      F     + +   +     G  R + A +  ++
Sbjct: 259 LE---GIANRTDFDLTQHQKYSGENLTYFDDETKQRYIPYVIEPSAGVDRSLLAFLIDAY 315

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + + I             ++AP K ++  +   +++ +    +IY  L      V +D+ 
Sbjct: 316 EYQQIDKDDFRVVLHLHPAIAPVKAAVFPLMKKEELVK-KAREIYNELKYKWI-VQYDES 373

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  IG ++   D +G P  + V  + + D  V I+ R T  +  + ++E+I Y   R  
Sbjct: 374 G-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVRVHIKEIIPYLEERIE 431


>gi|331266974|ref|YP_004326604.1| seryl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683646|emb|CBZ01264.1| seryl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 424

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|227833227|ref|YP_002834934.1| Histidyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184213|ref|ZP_06043634.1| histidyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454243|gb|ACP32996.1| Histidyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 425

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 135/440 (30%), Gaps = 58/440 (13%)

Query: 35  HSKGIYSWLPLGQKALDNV-NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
             KG+  ++P        V  A + +    +G   + +P  +   L+        D   K
Sbjct: 12  APKGVPDYVPPQSAIFAKVREAFVHQAH-LSGFQHIELPVFEDTSLFARGVGESTDVVSK 70

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADR D+++   P     +      H      LP         FR E RP+ G  R
Sbjct: 71  EMYTFADRGDRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLNYFGPFFRYE-RPQAG--R 127

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGD 205
            R+       +  +           +     R +  LGL    +        +  P   +
Sbjct: 128 YRQLQQVGVEAIGVDDPALDAEIIALAD---RSYRSLGLSQFRLELTSLGDHDCRPAYRE 184

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF+   D  E     ++      +  +  +  + +    ++                
Sbjct: 185 KLQEFLFKLDLDEETKARAELNPLRVLDDKRPEVQEQLVDAPLMLDHLNAECREHFETVT 244

Query: 266 KLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYV 312
            L D +     ++ R             E  H    G +  +     + G  A      +
Sbjct: 245 GLLDDMGVPYTINPRMVRGLDYYTKTCFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQEL 303

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               YG+G  R V A+     + +G+   + VA + ++L          +     I   L
Sbjct: 304 SGIGYGLGVDRTVLALEAEGVELEGV--DERVAVYGVAL------GAAAKQKMVSIINDL 355

Query: 373 SKVGCDVF--WDDMG--------EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            K G      + D G        ++  ++FA          +++G + +    V +K   
Sbjct: 356 RKAGISADMSFGDRGLKGAMKGADRANARFA----------LVLGDQELEAGSVALKDLR 405

Query: 423 TGIREDMSLEEVINYASHRF 442
              + D+ + +++N      
Sbjct: 406 AHEQHDVPVGDIVNQLRQLV 425


>gi|149003505|ref|ZP_01828379.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168494543|ref|ZP_02718686.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|237650372|ref|ZP_04524624.1| seryl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822060|ref|ZP_04597905.1| seryl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758441|gb|EDK65440.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|183575522|gb|EDT96050.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 424

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|293364834|ref|ZP_06611551.1| serine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703083|ref|ZP_07640030.1| seryl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316284|gb|EFE56720.1| serine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623476|gb|EFO02466.1| seryl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 424

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|210623798|ref|ZP_03294058.1| hypothetical protein CLOHIR_02009 [Clostridium hiranonis DSM 13275]
 gi|210153380|gb|EEA84386.1| hypothetical protein CLOHIR_02009 [Clostridium hiranonis DSM 13275]
          Length = 420

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 120/435 (27%), Gaps = 38/435 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ +  +G     P      + +    RE     G  EM  P  +  +L+        D 
Sbjct: 1   MLTKAPRGTKDITPKDSYKWNYLENKFREICALYGYQEMRTPIFEHTELFQRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+ +   P         F  +       P   + I   FR E RP+ G
Sbjct: 61  VQKEMYSFKDKGDREITLKPEGTAGAVRAFIENKLYADTQPTKMFYITPCFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F      +                   ++ F  LGLK + +   S         
Sbjct: 120 --RQRQFHQFGIEAIGSDSPSMDAE---AISLAMQFFRELGLKDLKVSLNSVGCPVCRKE 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 E+  L    E          +    +     D                      
Sbjct: 175 YDKKLREY--LDSKSE---VLCDMCNERKEKNPMRVIDCKNPQCKEAITDIPYMIDNLCD 229

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----------GKDHYV 312
             +  F  L E  +      E+      G  Y    +      +          G+   +
Sbjct: 230 DCKAHFAELEEYLKEMEIPYEIDKTIVRGLDYYKRTAFEIIAENIGAQSTVCGGGRYDGL 289

Query: 313 QMGSYGIGAMRVVAAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                G      +   + +       +  GI   +  +   I ++ I       +     
Sbjct: 290 VEQLGGPKGTSGIGFALGAERLLLTLEDAGIEIENPQS-TDIFIVTIG---DEAKKKSFG 345

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L         D +   + +QF  +D +     +++G   + +++  +K+  T  + 
Sbjct: 346 LLKELRDNHISADKDHLSRSVKAQFKYSDKINAKFTIVIGDDELKNNEASLKNMATSEQH 405

Query: 428 DMSLEEVINYASHRF 442
            + L E++     R 
Sbjct: 406 TVKLSELVKELKERL 420


>gi|18977999|ref|NP_579356.1| glycyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|32171572|sp|Q8U0G2|SYG_PYRFU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|18893778|gb|AAL81751.1| glycyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 568

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 91/560 (16%), Positives = 167/560 (29%), Gaps = 143/560 (25%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  ++G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 10  QDLMRRRGFAWGSFEIYGGARGFYDYGPLGATIKRKIEKKIREAFIREGFFEIETPDITP 69

Query: 77  ADLWVESGRYDSYG--------------------------------KEMLRLADRN---- 100
             +++ SG  + +                                 +EM ++   +    
Sbjct: 70  EQVFIASGHVEKFVDPLVECKKCGARFRADHLIEETLGIDVEGKSAEEMTKIIREHNIRC 129

Query: 101 -------------------------DKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQ 134
                                    DK     P T + +  +  R +  +   LPF  +Q
Sbjct: 130 PECGGELSDVWYFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQ 189

Query: 135 IQLKFRDELRPRFGVMRSRE----------------------------------FLMKDA 160
           I   +R+E+ PR G++R RE                                    +KD 
Sbjct: 190 IGKAYRNEISPRQGMIRLREFTQAEVEIFFNPNETEHPHFDEVKDEVLRLYPIEHQLKDL 249

Query: 161 YSFDLTPEGSKH---SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              +LT E +       N  F  Y+ +  R+ L       +               ADT 
Sbjct: 250 GMIELTAEEAVKKGYVMNTFFAYYMVMIKRILLDIGIPEDKIRFRQQLPEERAHYSADTW 309

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           + +++  +      +        D+     +                 K  +     K+V
Sbjct: 310 DAEIYSERFGWVECVGLAYRTDYDLSRHMKMSGADLTVMIHYDKPKIVKKLNVTLNMKKV 369

Query: 278 SARGIE------------------------------VGHIFYFGTKYSLPMSATFKGADG 307
             +  E                              +        K  L +    +   G
Sbjct: 370 GPKLKEKVKEINEKLKSMSQEELRKLVEELNANGKVIIEGHEL-EKEDLIIKEVEEKIQG 428

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSH--DGKGIIWPDS---VAPFKISLINIKAHDQVCR 362
           +     +     G  R    ++E+S   D  G ++      +AP +++++ + A  +   
Sbjct: 429 EKIVPHVLEPSFGIDRPFYLLLENSLTVDEDGRVYLKIKKDMAPIEVAVLPLVAK-EPLT 487

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +IY  L K G  V +D+  + IG ++   D +G P  V V ++   D  V I+ R 
Sbjct: 488 TIAYEIYRNLQKEGFIVVYDE-KDSIGKRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRD 546

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +  + +EEV        
Sbjct: 547 TREQIRVKIEEVPRKLKELI 566


>gi|242373930|ref|ZP_04819504.1| histidyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348484|gb|EES40086.1| histidyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 430

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 65/447 (14%), Positives = 132/447 (29%), Gaps = 62/447 (13%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYD 87
            MI +  +G    LP        +   + E        E+  P  +S +L+        D
Sbjct: 10  DMI-KIPRGTQDILPEDSVKWRYIENKLDELMEIYNYKEIRTPIFESTELFARGVGDSTD 68

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPR 146
              KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + +
Sbjct: 69  VVQKEMYTFQDKGDRSLTLRPEGTAAVVRSYIEHKMQGQPNQPVKLYYNGPMFRYERKQK 128

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               R R+F      +              M    + I+   GLK + +   S  IG   
Sbjct: 129 ---GRYRQFNQFGVEAIGAENPSIDAEVLAMV---MHIYQSFGLKHLKLVINS--IGDSE 180

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +     +  E  V   +  +D       +            +      A  +      
Sbjct: 181 SRK-----EYNEALVEHFEPVIDTFCSDCQSRLHTNPMRILDCKVDRDKEAIKNAPRITD 235

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHYV 312
             +   +      +     H+      Y                         +      
Sbjct: 236 YLNDDSKAYFEQVKQ----HLDDLNIPYVEDPNLVRGLDYYTHTAFEVMMDNPNYDGAIT 291

Query: 313 QMGSYGIGAMRVVAAVIESS--HDGKGIIWPDSV-----------------APFKISLIN 353
            +   G         +++        GI +  S+                 + F + ++ 
Sbjct: 292 TLCGGG-----RYNGLLQLLDGPSETGIGFALSIERLLLALEEEDIELDIESKFDLFIVT 346

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       K+   L K G     D +  +I  Q   AD L     +++G + + +
Sbjct: 347 MG---EEADRYAVKLLNELRKNGVKADKDYLNRKIKGQMKQADRLNAKYTIVIGDQELEN 403

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASH 440
           + ++IKH  +G  E + L+++++Y   
Sbjct: 404 NSIDIKHMASGESEKVQLDQLVDYFKE 430


>gi|282555151|gb|ADA82671.1| ProS [endosymbiont of Camponotus pudorosus]
          Length = 77

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 50/77 (64%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR ++Y L  L+E P+  E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+ 
Sbjct: 1  MRATQYLLTTLKEKPKSCETISHQLMLRSGMIRQISSGLYTWLPIGLRVLRKVENIVRDA 60

Query: 61 QNRTGAIEMSVPTLQSA 77
           N  G IE+ +P  Q A
Sbjct: 61 MNNIGFIEILMPMTQPA 77


>gi|182683380|ref|YP_001835127.1| seryl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|182628714|gb|ACB89662.1| seryl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 452

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 193 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 252

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 253 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 309

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 310 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 368

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 369 PAQNNYREISSCSNTEDFQARRAQIRYRD 397


>gi|307706061|ref|ZP_07642880.1| seryl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307618461|gb|EFN97609.1| seryl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 424

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|148988163|ref|ZP_01819626.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148993951|ref|ZP_01823321.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168488101|ref|ZP_02712300.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147926627|gb|EDK77700.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147927540|gb|EDK78567.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183573172|gb|EDT93700.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332075256|gb|EGI85726.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 424

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|251783202|ref|YP_002997507.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391834|dbj|BAH82293.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 425

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVIALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|229098875|ref|ZP_04229811.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
 gi|229105038|ref|ZP_04235691.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
 gi|229117900|ref|ZP_04247262.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228665557|gb|EEL21037.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228678377|gb|EEL32601.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
 gi|228684548|gb|EEL38490.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
          Length = 476

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|116516325|ref|YP_815885.1| seryl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|148983808|ref|ZP_01817127.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|161410754|ref|NP_357966.2| seryl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|30173153|sp|Q8DR22|SYS_STRR6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122279229|sp|Q04M63|SYS_STRP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116076901|gb|ABJ54621.1| seryl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|147923955|gb|EDK75067.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301799511|emb|CBW32058.1| seryl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 424

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|74006038|ref|XP_858867.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 3
            [Canis familiaris]
          Length = 1183

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 8/170 (4%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ ++ MI  +   G Y   P      +++      E  + G    
Sbjct: 1014 EAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENC 1073

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +         + +   PT E VM   +   ++S
Sbjct: 1074 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1133

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            +R+LP    Q     R E +     +R+REFL ++ +S   T E +    
Sbjct: 1134 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEV 1183


>gi|163942153|ref|YP_001647037.1| histidyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163864350|gb|ABY45409.1| histidyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 423

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    R+   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGSVELWQYIEGQARDICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DRAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKYVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGGQEEVALDVFASYVAEKL 422


>gi|76155685|gb|AAX26970.2| SJCHGC07933 protein [Schistosoma japonicum]
          Length = 118

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 55/103 (53%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  +  ++ +   + GA  + +PTL   ++W +SGR+      + +L DR        PT
Sbjct: 1   MRKLENLVDKYMLKLGAQRVQLPTLGPRNMWEKSGRWSEMHSSLFKLRDRLSHDYCLQPT 60

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           HEE +T    S   SY++LP   YQI  KFRDE RP+ G++R 
Sbjct: 61  HEECITSFVTSLKLSYKSLPVFLYQITSKFRDEPRPKNGLIRG 103


>gi|306825809|ref|ZP_07459148.1| serine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432170|gb|EFM35147.1| serine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 424

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|218282283|ref|ZP_03488582.1| hypothetical protein EUBIFOR_01164 [Eubacterium biforme DSM 3989]
 gi|218216751|gb|EEC90289.1| hypothetical protein EUBIFOR_01164 [Eubacterium biforme DSM 3989]
          Length = 476

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 127/364 (34%), Gaps = 68/364 (18%)

Query: 93  MLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +     L D      +   T + +  +         + LPF   QI   FR+E+ P  
Sbjct: 167 MFKTFQGVLEDAKSTIYLRPETAQGIFVNFKNVQRTMRKKLPFGIGQIGKSFRNEITPGN 226

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P      +     + ++    LG+    +R           
Sbjct: 227 FIFRTREFEQMELEFF-CKPGTDLDWFEYYCKNCVQFLKDLGINEENIRLR--------- 276

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                                    P E   + +  S           +     + +   
Sbjct: 277 ----------------------AHDPEELAHYSNGTSDIEYHFSEPIGWGELWGIADRTD 314

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                      +K +L     F     + +   +    +G  R++ A
Sbjct: 315 FDLK---------------AHQTTSKQNLEY---FDQEANEKYIPYVIEPSVGVERLMLA 356

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           V+  ++  + +            ++AP+K++++ +        D  ++++A+LSK    V
Sbjct: 357 VMCEAYQEEQLENDSRVVLKLHPALAPYKVAVLPLSKK---LSDQGDEVFAKLSKH-FSV 412

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +DD  + IG ++   D +G P  V V  +  +D  V I+ R T  +E ++L+++++Y  
Sbjct: 413 TYDD-AQSIGKRYRRQDAIGTPFCVTVDFETANDGCVTIRDRDTMQQERVALDDLVSYIE 471

Query: 440 HRFS 443
           +R +
Sbjct: 472 NRIA 475


>gi|307710546|ref|ZP_07646982.1| seryl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307618699|gb|EFN97839.1| seryl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 424

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|194017166|ref|ZP_03055778.1| histidyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194011034|gb|EDW20604.1| histidyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 424

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 136/445 (30%), Gaps = 58/445 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M     +G    LP   +    V  I R+        E+  P  +  +L+        D 
Sbjct: 1   MSFNIPRGTQDILPGESERWQYVEQIARDTCAAFQYKEIRTPIFEHTELFARGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY----RNLPFTFYQIQLKFRDELR 144
             KEM    D+  +++   P   E      RS++++        P   Y I   FR E R
Sbjct: 61  VQKEMYTFEDKKGRSITLRP---EGTASTVRSYVENKLFAQPAQPTKLYYIGPMFRYE-R 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--------- 195
           P+ G  R R+F      +              +    + ++ + GL ++ +         
Sbjct: 117 PQTG--RYRQFYQFGIEAIGSKDPAIDAE---VISLAMSVYEKAGLSNLKLVINSLGDKE 171

Query: 196 -RAESG--------PIGGDLSHEFIVLADTGETQVFCSKDFMDFP-------IPSENTDF 239
            RA+          P   +  H+          ++   K   D         I     D 
Sbjct: 172 SRADYRKALVEHFEPRIDEFCHDCQTRLHQNPLRILDCKKDRDHELMATAPSIQDYLNDE 231

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSL 296
                                D +  +  D             E  G I     G +Y  
Sbjct: 232 SRTYFEKVKQYLTDIGVEYVVDPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRY-- 289

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                 +G  G +       + +   R ++A+     D +GI  P          + I A
Sbjct: 290 --DGLVEGIGGPESPGI--GFAMSIERFLSAI-----DAEGIDLPLQ----DGIDLYIAA 336

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D    +  RL K G     D  G+++  QF  AD L      ++G   ++   V
Sbjct: 337 LGDDAKDYAVSLLNRLRKEGISSEMDYTGKKLKGQFKAADRLKAKFIAVLGEDELAQHIV 396

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            +K   TG + ++ L+E+I      
Sbjct: 397 NVKDTTTGEQIEVKLDELIQMMKAH 421


>gi|169350231|ref|ZP_02867169.1| hypothetical protein CLOSPI_00975 [Clostridium spiroforme DSM 1552]
 gi|169293014|gb|EDS75147.1| hypothetical protein CLOSPI_00975 [Clostridium spiroforme DSM 1552]
          Length = 425

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 140/444 (31%), Gaps = 51/444 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+++  +G    LP        +  +IR         E+  P  +  +L+  +     D 
Sbjct: 1   MMYKAPRGTVDILPDKTIKWQMLEQLIRTICANYNVKEIRTPIFEHTELFNRAVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +++   P     +   +  + + S  +     Y I   FR E RP+ 
Sbjct: 61  VSKEMYTFNDKKGRSITLRPEGTAGVARAYVENKMFSNPDKITKLYYIGPMFRYE-RPQN 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F                     M V+ +     LGLK + +   +  +G + S
Sbjct: 120 G--RQRQFHQFGVEMIGYESPYLDVECMTMAVTLV---EALGLKGVKLHINT--LGDEQS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYAATSDVHN 264
            E    A       +  +   D     E          +  +    +             
Sbjct: 173 REAYRNALKEHFAPYLDELCSDCKNRFETNPLRILDCKVDCDHPSMKNAPKTIDYLSETA 232

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGA----------------- 305
           ++ F+ + E         E+      G  Y                              
Sbjct: 233 KEHFNKVCELLDDLEIEYELDTNLVRGLDYYCHTVFEVISDDPRLGAGSTVGGGGRYNGL 292

Query: 306 ----DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +G +      ++G+   R++ A+ E   + +G+          + ++ + +     
Sbjct: 293 ISELNGPEAPGVGFAFGM--ERLLIAMDEELSEDEGL---------DVYVMPLGSK---A 338

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D   +I   L   G  V  D     + +QF   D +     +I+G + V D  V IK  
Sbjct: 339 KDLAMQITTMLRANGFSVDMDYQDRSLKAQFKTVDRMHSHFALIIGDQEVEDEVVNIKCT 398

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +  ++ + +E ++ Y  +    +
Sbjct: 399 HSKTQDVVPIENIVAYIENHMEGH 422


>gi|311739543|ref|ZP_07713378.1| histidine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305359|gb|EFQ81427.1| histidine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 429

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 138/431 (32%), Gaps = 38/431 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  + P    A   V   + E+ + +G   + +P  +   L+        D   KE
Sbjct: 12  APKGVPDYFPPQSAAFYKVRQTMVEQAHLSGFQHIELPIFEDTALFARGVGESTDVVSKE 71

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR D+++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 72  MYTFADRGDRSVTLRPEGTAGVMRSVIEHNLDRGQLPVKLNYFGPFFRYE-RPQAG--RY 128

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R F  LGL    +   S       P   + 
Sbjct: 129 RQLQQVGVEAIGVDDPALDAE---VIALADRSFRALGLSGFRLELTSLGDRNCRPAYREK 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+   D  E     ++      +  +  +  + ++   ++                 
Sbjct: 186 LQEFLFKLDLDEETRHRAEINPLRVLDDKRPEVQEQLADAPLMLDHLNDECRDHFETVTG 245

Query: 267 LFDSLP---ENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
           + D +    E      RG++              G +  +     + G  A      +  
Sbjct: 246 MLDDMGVAYEINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSG 305

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             YG+G  R + A+     + +GI      +   +  + + A     +     +   L K
Sbjct: 306 IGYGLGVDRALLAL-----EAEGITLDGVESRVDVFGVALGA---AAKRTMTTLINDLRK 357

Query: 375 VGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G      + D G + G+    AD  G    +++G + + +  V +K      + D+ + 
Sbjct: 358 AGISADMSFGDRGLK-GAM-KGADRAGARFALVLGEQELENGTVALKDLAAHEQHDVKVS 415

Query: 433 EVINYASHRFS 443
           ++++  +   +
Sbjct: 416 DLVSVLAREIN 426


>gi|169832533|ref|YP_001693918.1| seryl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|238688320|sp|B1I9K5|SYS_STRPI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|168995035|gb|ACA35647.1| seryl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
          Length = 424

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|323475075|gb|ADX85681.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus REY15A]
 gi|323477807|gb|ADX83045.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 386

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 5/155 (3%)

Query: 296 LPMSATFKGADGKDHYVQMG--SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           L        +  +     +      +   R+V   I  S   +    PD + P ++ L+ 
Sbjct: 223 LDFPKEIIDSKNRIKVWWVNESRTYVDVGRLVYYFILESIRKQPPTLPDWLNPIQVRLLP 282

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +K       D   ++  RL K G  V  DD+ + +G++   A     PL +I+G + V  
Sbjct: 283 VKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTEWIPLVIIIGEREVKT 339

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           S + +K R    ++ MS+EE++          + +
Sbjct: 340 STLTVKIRANNEQKSMSIEELVKEIKDEVKERQNL 374


>gi|289168522|ref|YP_003446791.1| seryl-tRNA synthetase [Streptococcus mitis B6]
 gi|288908089|emb|CBJ22929.1| seryl-tRNA synthetase [Streptococcus mitis B6]
          Length = 424

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|270293326|ref|ZP_06199535.1| serine--tRNA ligase [Streptococcus sp. M143]
 gi|270278175|gb|EFA24023.1| serine--tRNA ligase [Streptococcus sp. M143]
          Length = 424

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|48478186|ref|YP_023892.1| glycyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430834|gb|AAT43699.1| glycyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 474

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 157/469 (33%), Gaps = 84/469 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG------ 90
            G+Y + PLG    DN+    ++     GAI +  P +   +++  SG    +       
Sbjct: 28  SGLYDYGPLGVLLKDNIINKWKKAYLDEGAIFIDTPNITPGEVFDASGHLSRFSDIAAEC 87

Query: 91  ---------KEMLRLADRN------DKAMIY---GPTHEEVMTDIFRSHI---------K 123
                    + +L            D+A+           V  +I +             
Sbjct: 88  DSCKSKFKIENVLAFNKIEIIPKSVDEALSISEKNNLKCPVCGNIIKKIYNYNLMFRLEN 147

Query: 124 SYRNL-----------------------PFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           S   L                       P    Q+   FR+E+ PR  ++R REF   + 
Sbjct: 148 SNFYLRPETAQGIFVNFKLLSNYYRGKLPMAVAQLGKGFRNEISPRQSLIRLREFSQGEV 207

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ET 219
             F   PE     Y K    Y           I ++  +G        E+        E 
Sbjct: 208 EVF-FDPEN---EYWKDLFDY---------DEITLKPNTGV-------EYKTSIKNAFEN 247

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           ++  +     F + ++    D     ++I  +   P        +    ++  ++  V  
Sbjct: 248 RIIDNIAMAYFILKTQKILNDIGFKNDNIRFRQHDPDERAHYASDSWDAEARIDDDWVEI 307

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--SHDGKG 337
            GI     +      +          + +D    +     G  R+  A++      + KG
Sbjct: 308 VGIANRTNYDLKNHDAKSSERMSLKINNRDVIPNVIEPSYGIDRITLALMVQSYHKNEKG 367

Query: 338 ---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              + +   +AP+  +++ +    +       +IY  +  +   V++D+ G  IG +++ 
Sbjct: 368 YNVLSFKPEMAPYHFAVLPL-IKKENFIKKSMEIYNMIMSIDSYVYYDETG-SIGKRYSR 425

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D +G P  + +  + + +  V ++ R TG +E +  +++++Y S +  
Sbjct: 426 QDEIGTPFCITIDYETLENDSVTVRFRDTGNQERIDKKDLLDYLSGKLK 474


>gi|322377063|ref|ZP_08051555.1| serine--tRNA ligase [Streptococcus sp. M334]
 gi|321281776|gb|EFX58784.1| serine--tRNA ligase [Streptococcus sp. M334]
          Length = 424

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERALYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|307704266|ref|ZP_07641185.1| seryl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307622177|gb|EFO01195.1| seryl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 424

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|228993141|ref|ZP_04153063.1| Histidyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
 gi|228766600|gb|EEM15241.1| Histidyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
          Length = 423

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 145/443 (32%), Gaps = 58/443 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMYGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDL 206
           G  R R+F+     +              +    +  +  +GLK+I +   S G      
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNSLGDAASRQ 174

Query: 207 SH-------------EFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +H             EF        +    ++   K   D  + S      + ++  S  
Sbjct: 175 AHREALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRDHELMSTAPSITEYLNEESTT 234

Query: 250 EQWTAPY-------AATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D +  +  D             +  G I     G +Y+    
Sbjct: 235 YYEKVQELLTMMGVPFEKDPNLVRGLDYYQHTVFEIMSEADGFGAITTLSGGGRYN---- 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G      +G + +   R++ A+   +     I  P         ++ +     
Sbjct: 291 -GLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HNIDCYVVALGDK-- 340

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   KI   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K
Sbjct: 341 -AKDHAAKIAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKYVAVLGEDELDKGIINLK 399

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
              TG +E+++L+   +Y + + 
Sbjct: 400 DMATGGQEEVALDVFASYVAEKL 422


>gi|301793653|emb|CBW36038.1| seryl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 424

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|288560504|ref|YP_003423990.1| histidyl-tRNA synthetase HisS [Methanobrevibacter ruminantium M1]
 gi|288543214|gb|ADC47098.1| histidyl-tRNA synthetase HisS [Methanobrevibacter ruminantium M1]
          Length = 433

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 145/457 (31%), Gaps = 70/457 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           M  +  +G   +L    +        +R      G  E+  P  +   L+  +SG  +  
Sbjct: 1   MEFERPRGTRDFLFEEMRERKMAEDTLRNVFENYGFGEVQTPLFEDLKLFTTKSG--EEI 58

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             ++    D+ D+ +   P     +  ++ + ++     P   Y     FR E RP+ G 
Sbjct: 59  VDQLYNFKDKGDRDLALRPEITAPIARLYLNELQKTSK-PIKIYYYGSCFRYE-RPQKG- 115

Query: 150 MRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLS 207
            R R+F           TPEG          +       LG+ +        G I G  +
Sbjct: 116 -RFRQFWQFGCELIGAKTPEGEAEVIAMCNNAI----EELGITTAEFNVNHLGIIRGLFA 170

Query: 208 H---------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI---------------I 243
           H         E +V+ D G+  +       + PI  +  + +++                
Sbjct: 171 HFDIDTATQREIMVVIDKGDKDLLKDSLVGENPIIKDKPELNEVLFKLMDMVGDSSIIKD 230

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG---TKYSLPMSA 300
               +        A        K  +S          G+  G  +Y G     Y   + A
Sbjct: 231 IEELVAPYEETQEALEEFKELVKTLESFQVFNYKLNLGVARGLDYYTGIVFEVYVEGLGA 290

Query: 301 T--------------FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-GKGIIWPDSVA 345
                          F G D     V    + +G  R++ A+ E +       I    VA
Sbjct: 291 QKQVCGGGTYNLVKLFGGED-----VVSTGFALGFDRLMNAIEELNGKVELEPIVNTYVA 345

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                           R     I   L K       D   ++     A A+ +     V+
Sbjct: 346 AI----------SDSTRHNAFSIAQDLRKANIPTEVDLSRKKFKKILAYANKIDVKYTVL 395

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           VG + + + KV IK  LTG +E ++++EV++Y   + 
Sbjct: 396 VGERDLEEGKVTIKDMLTGEQELVAIDEVVDYIKGKL 432


>gi|15900330|ref|NP_344934.1| seryl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111657630|ref|ZP_01408364.1| hypothetical protein SpneT_02001184 [Streptococcus pneumoniae
           TIGR4]
 gi|148996814|ref|ZP_01824532.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149023698|ref|ZP_01836178.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168576870|ref|ZP_02722720.1| seryl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225860434|ref|YP_002741943.1| seryl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229691|ref|ZP_06963372.1| seryl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254625|ref|ZP_06978211.1| seryl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502204|ref|YP_003724144.1| seryl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067059|ref|YP_003876025.1| seryl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|30173203|sp|Q97SG0|SYS_STRPN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783497|sp|C1CPS1|SYS_STRZT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|14971880|gb|AAK74574.1| seryl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|147757389|gb|EDK64428.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147929635|gb|EDK80627.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|183577467|gb|EDT97995.1| seryl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225728141|gb|ACO23992.1| seryl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237799|gb|ADI68930.1| seryl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|306408596|gb|ADM84023.1| Seryl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|327390820|gb|EGE89160.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332202320|gb|EGJ16389.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA41317]
          Length = 424

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|94991059|ref|YP_599159.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|166223297|sp|Q1JFE4|SYS_STRPD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94544567|gb|ABF34615.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|21911052|ref|NP_665320.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28895262|ref|NP_801612.1| seryl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|30173169|sp|Q8K635|SYS_STRP3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21905261|gb|AAM80123.1| putative seryl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28810508|dbj|BAC63445.1| putative seryl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|70726291|ref|YP_253205.1| histidyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|83305878|sp|Q4L6X6|SYH_STAHJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|68447015|dbj|BAE04599.1| histidyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
          Length = 423

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/450 (15%), Positives = 133/450 (29%), Gaps = 68/450 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI    +G    LP        +   + +        E+  P  +S DL+        D 
Sbjct: 1   MIR-IPRGTQDILPEDSSKWRYIENQLDKLMKLYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ D+++   P   E    + RS+I++        P   Y     FR E +
Sbjct: 60  VQKEMYTFKDKGDRSITLRP---EGTAAVVRSYIENKMQGIPNQPVKLYYNGPMFRYERK 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F      +              M    + I+   GLK + +   S  IG 
Sbjct: 117 QK---GRYRQFTQFGVEAIGAENPSMDAEVLAMV---MHIYESFGLKHLKLVINS--IGD 168

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S +     +  E  +   +  +D       +            +      A  +    
Sbjct: 169 ADSRK-----EYNEALIRHFEPVIDTFCDDCKSRLHTNPMRILDCKIDRDKEAVKNAPRI 223

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDH 310
               +   +      +     H+   G  Y                         +    
Sbjct: 224 TDYLNDDSKAYFNEVKT----HLDDLGISYVEDPNLVRGLDYYTHTAFELMMDNPNYDGA 279

Query: 311 YVQMGSYGIGAMRVVAAVIESS--HDGKGIIWPDSVA-----------------PFKISL 351
              +   G         ++E     +  GI +  S+                   F + +
Sbjct: 280 ITTLCGGG-----RYNGLLELLDGPNQTGIGFALSIERLLLALEEEGIELDVEDTFDLFI 334

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +       K+  +L K G     D +  ++  Q   AD L     V++G + +
Sbjct: 335 VTMG---EEAERYSVKLLNQLRKSGIKADKDYLQRKVKGQMKQADRLNAQYTVVIGDQEL 391

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  +++K   TG  E ++L  ++NY   +
Sbjct: 392 ENEVIDVKDMSTGETETINLNNLVNYFQEK 421


>gi|168490677|ref|ZP_02714820.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183575046|gb|EDT95574.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 424

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|149012162|ref|ZP_01833271.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|303255391|ref|ZP_07341457.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303259488|ref|ZP_07345465.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262351|ref|ZP_07348294.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303264769|ref|ZP_07350686.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303266608|ref|ZP_07352493.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303268841|ref|ZP_07354628.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|147763764|gb|EDK70698.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|301801323|emb|CBW34006.1| seryl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302597636|gb|EFL64716.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636450|gb|EFL66942.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639422|gb|EFL69880.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302641622|gb|EFL71982.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302643852|gb|EFL74114.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302645636|gb|EFL75866.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 424

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|322374872|ref|ZP_08049386.1| serine--tRNA ligase [Streptococcus sp. C300]
 gi|321280372|gb|EFX57411.1| serine--tRNA ligase [Streptococcus sp. C300]
          Length = 424

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|282162818|ref|YP_003355203.1| glycyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282155132|dbj|BAI60220.1| glycyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 580

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/554 (14%), Positives = 163/554 (29%), Gaps = 143/554 (25%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYG 90
           I+  + G Y + P+G      +    R       G  E+  PT+    ++  SG    + 
Sbjct: 23  IYGGASGFYDYGPMGATLKRKIEDAWRRLYCVGEGFYEIEAPTIGVEAIFEASGHVGGFA 82

Query: 91  ---------KEMLR-------------------LADRNDKAMIYGPTHEEV------MTD 116
                    KE  R                   L +      I  P              
Sbjct: 83  DPMTTCQKCKESFRADHIIKGVMEIPDGLKKEQLTEIIKNKNIECPECGGPLGEVYDFNL 142

Query: 117 IFRSHI--------------------------KSYRN-LPFTFYQIQLKFRDELRPRFGV 149
           +F + I                          + YR  LPF   QI   +R+E+ PR GV
Sbjct: 143 MFNTWIGPGQKKKGYLRPETAQGMFVDFPRLLRFYREKLPFGVTQIGKSYRNEISPRQGV 202

Query: 150 MRSREFLMKDAYSFDLTPE----------------------------------------- 168
           +R REF   +A  F    +                                         
Sbjct: 203 IRLREFTQAEAEVFVNPKDKNSHPNFAAVRDMVLSLYDEDCQLNNKPPVPMTVGDAVAKG 262

Query: 169 GSKHSYNKMFVSYLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              + Y   +V+   +F   +G+    +R     +  + +H      D    +V   +  
Sbjct: 263 TIANEYLAYYVALTNVFLATVGIDPKRLRF-RQHMRTERAHYATDCWD---AEVLLERFG 318

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR------G 281
               +   +    D+ +     E   + +               P+ K +  +       
Sbjct: 319 WVEIVGIADRTNYDLTAHQKRSEVDMSVFVPFEKPMKVTRTIVTPDMKVIGPKYKGKAGK 378

Query: 282 IEVGHIFYFGTKYSLP-MSATFKGAD------------------GKDHYVQMGSYGIGAM 322
           I          + S P +     G D                  G++    +     G  
Sbjct: 379 IMAALKAMKQEELSKPEVVLNIDGEDIVIPSSLFEHKTVEEDVSGENVLAHVVEPSYGVD 438

Query: 323 RVVAAVIESSHDGK--------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           R + + +E ++  +         +    SVAP   +++ + + + +       I   L +
Sbjct: 439 RTLYSALEHAYGEEIVKGEERIVLRLARSVAPITAAVLPLLSKEPLAG-KARAIALDLKE 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  + +D+ G  IG ++   D +G P  + +    + D  V I+ R T  +  + ++++
Sbjct: 498 KGFFIEYDESG-TIGKRYRRNDEVGTPFSITIDFDTMEDDTVTIRDRDTMSQVRVPVKDL 556

Query: 435 INYASHRFSNNRPV 448
            +      +++RP+
Sbjct: 557 SSVLGELLASDRPL 570


>gi|228999191|ref|ZP_04158772.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
 gi|229006738|ref|ZP_04164372.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
 gi|228754599|gb|EEM04010.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
 gi|228760536|gb|EEM09501.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
          Length = 423

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 144/440 (32%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTIELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMYGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHREALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEES 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       +     E      RG++     +F        FG   +L     + G 
Sbjct: 233 TTYYEKVQELLTMMGVPFEKDPNLVRGLDYYQHTVFEIMSEADGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +       +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HNIDCYVVALGDK---AK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   KI   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKIAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKYVAVLGEDELDKGIINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGGQEEVALDVFASYVAEKL 422


>gi|225853986|ref|YP_002735498.1| seryl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|254783495|sp|C1CCH7|SYS_STRZJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225723288|gb|ACO19141.1| seryl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 424

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSTAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|94989115|ref|YP_597216.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94993007|ref|YP_601106.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|166223295|sp|Q1JA99|SYS_STRPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166223296|sp|Q1JKF1|SYS_STRPC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94542623|gb|ABF32672.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546515|gb|ABF36562.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|222153600|ref|YP_002562777.1| seryl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254783494|sp|B9DVD8|SYS_STRU0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|222114413|emb|CAR43194.1| seryl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKNLGARLERALYNFMLDEHAKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELKDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKDLPINFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|312867885|ref|ZP_07728090.1| serine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311096640|gb|EFQ54879.1| serine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYDELEKMVVNAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|71904134|ref|YP_280937.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|123639382|sp|Q48RS8|SYS_STRPM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71803229|gb|AAX72582.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|307708238|ref|ZP_07644705.1| seryl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307615684|gb|EFN94890.1| seryl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 424

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|94994938|ref|YP_603036.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|166223298|sp|Q1J594|SYS_STRPF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94548446|gb|ABF38492.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|168482647|ref|ZP_02707599.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|172043721|gb|EDT51767.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|332077694|gb|EGI88155.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332203581|gb|EGJ17648.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA47368]
          Length = 424

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNAEDFQARRAQIRYRD 369


>gi|15897317|ref|NP_341922.1| threonyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284173344|ref|ZP_06387313.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|13813530|gb|AAK40712.1| Threonyl-tRNA synthetase homolog (thrS-like) [Sulfolobus
           solfataricus P2]
 gi|261601991|gb|ACX91594.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 386

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           L        +  +     +    I     R++   I  S   +    PD + P ++ L+ 
Sbjct: 223 LNFPKEINDSKNRIRVWWVNESKIYVDVGRLIYYFILESVKQQPPTLPDWLNPIQVRLLP 282

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +K       D   ++  RL K G  V  DD+ + +G++   A     P  +++G + V  
Sbjct: 283 VKKD---FLDFSIQVAERLRKEGIRVNIDDLDDSLGNKIRRAGTDWIPFVIVIGEREVKT 339

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + + +K R    ++ M++EE++          + +
Sbjct: 340 NTLTVKIRARNEQKSMTVEELVKEIKDEVKERQNL 374


>gi|15675591|ref|NP_269765.1| seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71911296|ref|YP_282846.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|306826795|ref|ZP_07460097.1| serine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|30173206|sp|Q99YE2|SYS_STRP1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|13622796|gb|AAK34486.1| putative seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71854078|gb|AAZ52101.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|304431084|gb|EFM34091.1| serine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|19746699|ref|NP_607835.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|50914823|ref|YP_060795.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|30173174|sp|Q8NZN7|SYS_STRP8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461685|sp|Q5XAF1|SYS_STRP6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|19748923|gb|AAL98334.1| putative seryl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|50903897|gb|AAT87612.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|330835872|ref|YP_004410600.1| histidyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329568011|gb|AEB96116.1| histidyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 431

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 145/439 (33%), Gaps = 47/439 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  +     + +  V  I RE   + G  E   P ++  +L+   G  +   K M    
Sbjct: 9   GMQDYYADEAQKIRKVETIFREVVEKAGYSEAITPVVEEFELFSVKGG-EELRKTMYVFK 67

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+ D+ +   P     +  ++ + ++ +   P   + +   +R +  P+ G  R REF  
Sbjct: 68  DKGDREVALRPEITPSIVRLYLNSLQ-HFPKPLRIFYVGRVYRYDE-PQLG--RYREFRQ 123

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-----------IPMRAESGPIGGDL 206
                     E        MF      + ++GLK                 +   I  +L
Sbjct: 124 AGVEVLGT--ESILAELE-MFHLLNDFYRKIGLKDNVEFKINNIGIYRKIFDYIKIDDNL 180

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS--------IVEQWTAPYAA 258
               + L D G+   F S         S+  D  +I++ N         I          
Sbjct: 181 QEHVLHLLDKGKINEFYSTLERIPIQNSKIMDLLEILTKNGKSVKIEELIAYIDKIDIPE 240

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEV----GHIFYFG-----TKYSLPMSATFKGADGKD 309
                 +    S   +       I++    G  +Y G     TK  LP S     A G  
Sbjct: 241 LKIEIEKISLISDVLSSLGINYLIDLSFVRGLAYYTGPIFEVTKKGLPFSI----AGGGR 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           +   +  YG      +   I      H  + I+         + LI +   D +      
Sbjct: 297 YDSLVEIYGGSKTPAIGFAIGIERTVHALENILLRKE----PVHLIAVITLDNLAIKKAL 352

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I + L + G     ++    +    ++    G+   +I+G K + + KV +++  T  +
Sbjct: 353 EIASILRENGYVTTLNNKDLSLSKLISLYADQGYTHVIIIGKKELENEKVTVRNLKTREQ 412

Query: 427 EDMSLEEVINYASHRFSNN 445
             +++ E+I   +     N
Sbjct: 413 RLVNISELIRVLNSDMQAN 431


>gi|281413080|ref|YP_003347159.1| histidyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281374183|gb|ADA67745.1| histidyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 420

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 140/419 (33%), Gaps = 41/419 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  P  +  +L+V S     D   KEM    D+  +++   
Sbjct: 20  WRYVEETFRNVCESAGIEEIRTPIFEQTELFVRSVGEESDIVQKEMYTFQDKAGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    R     +Y +   FR E +P+ G  R R+F           P
Sbjct: 80  PEGTAPVVRAFLENSLVDRGFQQRYYYVGPMFRYE-KPQSG--RLRQFHQVGFEIIG--P 134

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
           E  K  +  M +       RLGL    +   S                  G +  +L  +
Sbjct: 135 ESPKADFE-MIILVDTFLRRLGLTKYKIHLNSIGCPVCRKNYREALKEYYGQVLDNLCDD 193

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +T   ++   K   ++ + +  +  D +        +    Y  T ++   +   
Sbjct: 194 CKRRYETNILRLLDCKVDHEYALNAPKS-VDYLCDSCRAHYKKLKEYLNTFEIEYVEDHT 252

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVA 326
            +      +    EV H    G + ++     + G     G      +G  G G  R++ 
Sbjct: 253 LVRGLDYYTRTVFEVRH-EGLGAQNAIAGGGRYDGLFAELGGSSVPALGFAG-GIERIIL 310

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+       +GI  P       + L+ I    +       ++   L K G  V  D M  
Sbjct: 311 AL-----KAEGIEIPMKN----VHLVYIATLGEKAFMDGVQLAGELRKKGLSVDVDIMDR 361

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++  Q   A  +G    VI+G + +    V ++   TG + ++  +   +Y + R S +
Sbjct: 362 KLSGQLKHASRMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSKD 420


>gi|319939766|ref|ZP_08014123.1| seryl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811104|gb|EFW07415.1| seryl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 425

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   ++D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHQKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFEVSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEHSYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|226356735|ref|YP_002786475.1| glycyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|226318725|gb|ACO46721.1| putative glycine--tRNA ligase (Glycyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 504

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 114/376 (30%), Gaps = 65/376 (17%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRF 147
           M +         D      P   + +   F++ + S  R LPF   QI   FR+E+ PR 
Sbjct: 169 MFKTTIGPVADEDSYGYLRPETAQGIFTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRN 228

Query: 148 GVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            + R RE    +   F +  T E                                     
Sbjct: 229 FIFRVRELEQMEIEFFCVPGTDEQWHE--------------------------------- 255

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             H         E Q           +P+E+       + + + +  T  +     + N 
Sbjct: 256 --HWLEKRLSWWEAQGVPRSKIEILDVPAEDLAHYSKRTYDLMYDYPTLGHEEIEGIANR 313

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRV 324
             +D     K       E+G +             T    +  K     +     G  R 
Sbjct: 314 SDYDLGSHTKAQG----ELGLVAKVEENNDSVAKLTIPHPETNKPVVPFVIEPSAGVDRA 369

Query: 325 VAAVIESSHD----GKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           + AV+  +        G     +     +AP K+++I +  + +      + I A L  +
Sbjct: 370 MLAVLSEAFTKETLENGSERIVLKLKPHLAPIKVAVIPLARNREEITSVAKAIKAELQGL 429

Query: 376 GC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-------GSKFVSDSKVEIKHRLTGIRE 427
           G   V ++D G  IG  +   D +G P  V V       G        V ++ R T  +E
Sbjct: 430 GLGRVLYEDSGN-IGKAYRRHDEVGTPYCVTVDFDTVGKGEDPALTDTVTVRDRDTLAQE 488

Query: 428 DMSLEEVINYASHRFS 443
            + + E+  +   +  
Sbjct: 489 RVKISELSAWIQAKLR 504


>gi|168485545|ref|ZP_02710053.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183571170|gb|EDT91698.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 424

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNAEDFQARRAQIRYRD 369


>gi|15643847|ref|NP_228896.1| histidyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|7674351|sp|Q9X0H5|SYH_THEMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|4981634|gb|AAD36166.1|AE001768_15 histidyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 420

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 140/419 (33%), Gaps = 41/419 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  P  +  +L+V S     D   KEM    D+  +++   
Sbjct: 20  WRYVEETFRNVCESAGIEEIRTPIFEQTELFVRSVGEESDIVQKEMYTFQDKAGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    R     +Y I   FR E +P+ G  R R+F            
Sbjct: 80  PEGTAPVVRAFLENSLIDRGFQQRYYYIGPMFRYE-KPQSG--RLRQFHQVGFEIIGPES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
             +      +  ++LR   RLGL    +   S                  G I  +L  +
Sbjct: 137 PKADFEVIMLVDTFLR---RLGLTKYKIHLNSIGCPVCRKNYREALKEYYGRILDNLCDD 193

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +T   ++   K   ++ + +  +  D +        +    Y  T ++   +   
Sbjct: 194 CKRRYETNILRLLDCKVDHEYSLNAPKS-VDYLCDSCRAHYKKLKEYLNTFEIEYVEDHT 252

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVA 326
            +      +    EV H    G + ++     + G     G      +G  G G  R++ 
Sbjct: 253 LVRGLDYYTRTVFEVRH-EGLGAQSAIAGGGRYDGLFAELGGSSVPALGFAG-GIERIIL 310

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+       +GI  P       + L+ I    +       ++   L K G  V  D M  
Sbjct: 311 AL-----KAEGIEIPMKN----VHLVYIATLGEKAFMDGVRLAGELRKKGLSVDVDIMDR 361

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++  Q   A  +G    VI+G + +    V ++   TG + ++  +   +Y + R S +
Sbjct: 362 KLSGQLKHASRMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSKD 420


>gi|282555140|gb|ADA82663.1| ProS [Candidatus Blochmannia sayi]
          Length = 76

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 51/76 (67%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P++    SH+LMLR G+I Q S G+Y+WLP G + L  +  IIREE
Sbjct: 1  MRISQYLLATLKETPKNCTTISHQLMLRAGLIRQVSSGLYTWLPTGLRVLRKIENIIREE 60

Query: 61 QNRTGAIEMSVPTLQS 76
           ++  AIE+S+P +Q 
Sbjct: 61 MSKINAIEISMPIVQP 76


>gi|56807927|ref|ZP_00365750.1| COG0172: Seryl-tRNA synthetase [Streptococcus pyogenes M49 591]
 gi|209559859|ref|YP_002286331.1| seryl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238065107|sp|B5XHX4|SYS_STRPZ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|209541060|gb|ACI61636.1| Seryl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 425

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDVEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|225175514|ref|ZP_03729508.1| histidyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225168843|gb|EEG77643.1| histidyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 471

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 140/436 (32%), Gaps = 39/436 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           +  +G    LP   +        +RE     G  E+  P  +  +L++   G   D   K
Sbjct: 52  KVPRGTRDILPGDIETWQFFEEKVRELCRLFGYSEIRTPIFEHTELFLRGVGEVTDIVAK 111

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR D+++   P     +   +  H       P   Y I   FR + RP+ G  R
Sbjct: 112 EMYTFTDRGDRSLTLRPEGTASVARAYAEHKLYGDAQPIKVYYIGPMFRYD-RPQAG--R 168

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------GPIGG 204
            R+F       F  +          + + +   F  LGL    +   S            
Sbjct: 169 YRQFHQFGVEVFGTSEPTLDAEVMALSLVF---FRSLGLTEFTLEINSVGCPQCRRAYRD 225

Query: 205 DLSHEFIVLAD-TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            L  E     D                 +  +N    DI     ++              
Sbjct: 226 KLQEELKEKVDGLCPDCADRYDKNPLRILDCKNNKCQDITGDAPLMLGSLCGECDEHFTA 285

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSAT-FKGADGKDHYVQMGSYG- 318
            ++  D+L E   V+ R +  G  +Y  T +   S  + A    G  G+   +     G 
Sbjct: 286 VQEAMDALGEQYVVNPRLV-RGLDYYTKTAFEIVSPVLGAQSSIGGGGRYDQLLSTIGGP 344

Query: 319 --------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                   IG  RV+ A+            P++     + +    A   V      ++  
Sbjct: 345 DVPGIGFAIGIERVLLAL------EAAGTLPEAGGVLDVYVATAGA---VPAPVALRLAM 395

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G     D +G  + +Q   AD       VI+G + +   +  ++    G ++D++
Sbjct: 396 DLRGAGLAAEKDYLGRSLKAQMKYADKKQAKFLVILGDEEMQRGQATVRDMKDGSQQDVA 455

Query: 431 LEEVINYASHRFSNNR 446
           L +++ Y + +    +
Sbjct: 456 LADLVGYLAGQVKEAK 471


>gi|89100799|ref|ZP_01173652.1| histidyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084502|gb|EAR63650.1| histidyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 424

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 139/438 (31%), Gaps = 52/438 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEM 93
            +G    LP   +    +    RE  +R    E+  P  +  +L++       D   KEM
Sbjct: 6   PRGTQDILPGESEKWQYIEGKARELCSRFQYQEIRTPIFEHTELFLRGVGDTTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHE-EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DR  +++   P      +     + +    N P   Y     FR E RP+ G  R 
Sbjct: 66  YTFEDRGGRSLTLRPEGTAPTVRSFVENKMHGNANQPVKLYYTGPMFRYE-RPQAG--RF 122

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP-MRAESGPIGGDLSH--- 208
           R+F+     +   +          +    + I+  LGLK +  +    G      SH   
Sbjct: 123 RQFVQFGVEALGSSDPAIDAE---VIALAMSIYTELGLKKLKLVINSLGDKESRNSHREA 179

Query: 209 ----------EFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                     EF        +    ++   K   +  +        D ++ +S       
Sbjct: 180 LIAHFKPRIGEFCSDCQNRLEKNPMRILDCKKDREHELMQTAPSILDFLNEDSKKYFEKV 239

Query: 255 PYA-------ATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMSATFKG 304
                      T D +  +  D             E  G I     G +Y+         
Sbjct: 240 QQYLADVSIDFTVDPNLVRGLDYYNHTAFEIMSDAEGFGAITTLCGGGRYN-----GLTE 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +     R ++A+     + +GI  P +       L+ +    +  +D 
Sbjct: 295 EIGGPEAPGIG-FAFSIERFLSAL-----EAEGIKLPVNEG-IDCYLVALG---EEAKDY 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L   G     D +  +I +QF  AD +      ++G   +   K+ +K   TG
Sbjct: 345 SVGLLHKLRMAGISAERDYLDRKIKTQFKAADRMNAKYVAVLGEDELKAGKINVKSMETG 404

Query: 425 IREDMSLEEVINYASHRF 442
            + ++SL+  I+      
Sbjct: 405 DQTEVSLDSFIDQLKELI 422


>gi|229163352|ref|ZP_04291304.1| Histidyl-tRNA synthetase 2 [Bacillus cereus R309803]
 gi|228620133|gb|EEK77007.1| Histidyl-tRNA synthetase 2 [Bacillus cereus R309803]
          Length = 423

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +  +L++       D   K
Sbjct: 4   QIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM    DR ++++   P   E    + RS++++        P   Y I   FR E RP+ 
Sbjct: 64  EMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    +  +  +GLK+I +   S  +G   S
Sbjct: 120 G--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVVLNS--LGDAAS 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDIISLNSIVEQWTA 254
            +    A     +    +   D                   N +        +      +
Sbjct: 173 RQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEDS 232

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYSLPMSATFKG- 304
                       + D   E      RG++     +F        FG   +L     + G 
Sbjct: 233 AVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+   +     I  P         ++ +    +  +
Sbjct: 293 VQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYVVALG---EKAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +    + +K   
Sbjct: 343 DHAAKVAFDLRKAGLSVEKDYLDRKMKAQFKSADRLNAKFVAVLGEDELDKGVINLKDMA 402

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG +E+++L+   +Y + + 
Sbjct: 403 TGGQEEVALDVFASYVAEKL 422


>gi|309805541|ref|ZP_07699586.1| anticodon binding domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|309807191|ref|ZP_07701165.1| anticodon binding domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|309808834|ref|ZP_07702719.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|315653429|ref|ZP_07906351.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|308165192|gb|EFO67430.1| anticodon binding domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308166412|gb|EFO68617.1| anticodon binding domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308167960|gb|EFO70093.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|315489354|gb|EFU78994.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 106

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            WP  VAPF+I +I +   +       +K+    S    DV +DD  E+ G +F  ADL+
Sbjct: 4   FWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSDK-YDVLYDDRNERPGVKFNDADLI 62

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P+++IVG + VS+  VE+K        +MSL+ +  Y S    
Sbjct: 63  GAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKELR 106


>gi|325971777|ref|YP_004247968.1| glycyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027015|gb|ADY13774.1| glycyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 443

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/485 (14%), Positives = 144/485 (29%), Gaps = 116/485 (23%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I Q S       G Y + PLG +  +N+     +E  +     + +    L  
Sbjct: 12  LCKRRGFIFQSSEIYGGLNGAYDYGPLGVQLKNNIRDFWWKEMTQIHDDIVGLDASILMH 71

Query: 77  ADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEV------------MTDIFRSH 121
             +W  SG   ++   M+   +   R     I                       +F +H
Sbjct: 72  PRVWEASGHVSNFSDPMVDCKQCKSRFRADQIDLKGACPTCGTKDSFTEPRNFNLMFATH 131

Query: 122 IKSYRN-----------------------------LPFTFYQIQLKFRDELRPRFGVMRS 152
           I +  +                             +PF   Q+   FR+E+  +  + RS
Sbjct: 132 IGANADASSTIYLRPETAQGIYVDFKNVVSSSRVKIPFGIAQVGKSFRNEITTKNFIFRS 191

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F   P   +  ++      +  +H++G+K   +R                
Sbjct: 192 CEFEQMEMQWF-CKPGTDEKWFSYWREQRMAFYHKMGIKPQSLR---------------- 234

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               G  ++                          I   +   +     VH+   +D   
Sbjct: 235 WHQHGPDELA-----------------FYAKDAYDIQFLFPMGWQELEGVHSRTDYDLTQ 277

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                                +S            + +   +     G  R V   +  +
Sbjct: 278 H------------------QTFSGKEMTYLDPESNERYIPYVVETSAGLTRNVLMALGDA 319

Query: 333 HDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +D +          + +  S+AP  ++++ +   D +  +   K+   L       F+D 
Sbjct: 320 YDEEELEGGDVRTVLHFHPSLAPVTVAVLPLVKKDGIA-EFASKLEHELRD-DFSTFYDV 377

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G  IG ++   D +G P  V V  + + D  V ++ R +  +  +++ +++        
Sbjct: 378 SGA-IGRRYRRMDEIGTPYCVTVDYQSLEDQTVTLRLRDSMEQVRVAITDLVATIKKATK 436

Query: 444 NNRPV 448
             + V
Sbjct: 437 EYKRV 441


>gi|119953163|ref|YP_945372.1| glycyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|119861934|gb|AAX17702.1| glycyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 448

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/483 (15%), Positives = 151/483 (31%), Gaps = 109/483 (22%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G++ + PLG +   N+               + +    L  
Sbjct: 13  LAKRKGFVFQSSEIYGGLSGVWDYGPLGIELKKNIQKEWWNTMVYLHENVVGLDSSILMR 72

Query: 77  ADLWVESGRYDSYGKE---------------------------------------MLRLA 97
            ++W  SG  DS+                                          M +  
Sbjct: 73  PEVWEASGHVDSFLDLLVDCKNCKNRFRIDSIDLSNGCSSCNSIGTFTAPRSFNLMFKTN 132

Query: 98  ----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRS 152
               + +   +   P   + +   FR+ + S R  +PF   Q+   FR+E+  +  + R+
Sbjct: 133 IGAVEDSSNEIYLRPETAQGIFVNFRNVLDSTRLKVPFGIAQVGKAFRNEIVAKNFIFRT 192

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F    + S   Y             LG++               S     
Sbjct: 193 CEFEQMEMQFFVHPNQMSDWYYYWQQKRMNFFIETLGIR---------------SDNLRF 237

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               G+     +K  +D                  I  ++   +     +HN   +D   
Sbjct: 238 KEHKGDELAHYAKAAVD------------------IEYKFPFGFQEIEGIHNRGNYDLSQ 279

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA---AVI 329
             K      +   H    G KY                YV   S G+    ++    A  
Sbjct: 280 HAKFCGKPKLFEYHDLTSGDKYIP--------------YVIETSLGLTRSVLMTLCDAYA 325

Query: 330 ESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
               +G+G    +     +AP+K++++ +   D    +   K++ + S     +F+DD  
Sbjct: 326 HEELEGEGKRIVLRLHPKLAPYKVAILPLVKKD-GLPELARKVFMQFSD-DFYMFYDD-N 382

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             IG ++   D +G P  V V    + +  V ++ R +  +  + ++++ +Y      N 
Sbjct: 383 GTIGKRYRRQDEIGTPYCVTVDYDTIENRTVTLRDRDSMAQIRIPIDDLYSYIRTEILNY 442

Query: 446 RPV 448
           + V
Sbjct: 443 KGV 445


>gi|314933795|ref|ZP_07841160.1| histidine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653945|gb|EFS17702.1| histidine--tRNA ligase [Staphylococcus caprae C87]
          Length = 420

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 133/442 (30%), Gaps = 54/442 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP       ++   + E        E+  P  +S +L+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSIKWRHIENKLDELMELYNYKEIRTPIFESTELFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSLTLRPEGTAAVVRSYIEHKMQGNPNQPVKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  IG   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSIDAEVLAMV---MHIYESFGLKHLKLVINS--IGDSES 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +D       +            +      A  +       
Sbjct: 172 RK-----EYNEALVNHFEPVIDTFCSDCQSRLHTNPMRILDCKIDRDKEAIKTAPRITDY 226

Query: 268 F-DSLPENKRVSARGIEVGHIFYF-------GTKY--SLPMSATFKGADGKDHYVQMGSY 317
             D            ++  +I Y        G  Y             +       +   
Sbjct: 227 LNDDSKAYYEQVKHHLDDLNIPYVEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGG 286

Query: 318 GIGAMRVVAAVIESS--HDGKGIIWPDSVAP-----------------FKISLINIKAHD 358
           G         +++        GI +  S+                   F + ++ +    
Sbjct: 287 G-----RYNGLLQLLDGPSETGIGFALSIERLLLALEEEGIELDIEEKFDLFIVTMG--- 338

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       K+   L K       D +  +I  Q   AD L     +++G + + ++ + I
Sbjct: 339 EEADRYAVKLLNDLRKNDVKADKDYLNRKIKGQMKQADRLNAKYTIVIGDQELENNSIAI 398

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           K+  TG  E++ L+++INY   
Sbjct: 399 KNMTTGESENIQLDQLINYFKK 420


>gi|323127929|gb|ADX25226.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 425

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEKSYQELEKMTANAENILQKLGLPYRVIALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|229062098|ref|ZP_04199423.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH603]
 gi|228717250|gb|EEL68925.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH603]
          Length = 476

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 151/449 (33%), Gaps = 48/449 (10%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    R+   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGSVELWQYIEGQARDICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AES-GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             S G      +H   ++A           D       +     D     N  +      
Sbjct: 217 LNSLGDAASRQAHRDSLIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPS 276

Query: 256 YAATSDVHNEKLFDSLPENKRVSA----------RGIEVG--HIFY-------FGTKYSL 296
                +  +   +D + E   +            RG++     +F        FG   +L
Sbjct: 277 ITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTL 336

Query: 297 PMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                + G     G      +G + +   R++ A+   +     I  P         ++ 
Sbjct: 337 SGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYVVA 389

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +  +D   KI   L K G  V  D +  ++ +QF  AD L      ++G   +  
Sbjct: 390 LG---EKAKDQAAKIAFDLRKAGLAVEKDYLDRKMKAQFKSADRLNAKYVAVLGEDELDK 446

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + +K   TG +E+++L+   +Y + + 
Sbjct: 447 GIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|322386847|ref|ZP_08060471.1| serine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321269129|gb|EFX52065.1| serine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 446

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRD 390


>gi|322412582|gb|EFY03490.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 425

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEKSYQELEKMTANAENILQKLGLPYRVIALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|148270774|ref|YP_001245234.1| histidyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166228627|sp|A5IN85|SYH_THEP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|147736318|gb|ABQ47658.1| histidyl-tRNA synthetase [Thermotoga petrophila RKU-1]
          Length = 420

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 138/419 (32%), Gaps = 41/419 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  P  +  +L+V S     D   KEM    D+  +++   
Sbjct: 20  WRYVEETFRNVCESAGIEEIRTPIFEQTELFVRSVGEESDIVQKEMYTFQDKAGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    R     +Y I   FR E +P+ G  R R+F            
Sbjct: 80  PEGTAPVVRAFLENSLIDRGFQQRYYYIGPMFRYE-KPQSG--RLRQFHQVGFEIIGSES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
             +      +  ++LR   +LGL    +   S                  G I  +L  +
Sbjct: 137 PKADFEVIMLVDTFLR---KLGLTKYRIHLNSIGCSACRKNYREALKEYYGQILANLCDD 193

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +T   ++   K   ++ + +  +  D +        +    Y  T ++   +   
Sbjct: 194 CKRRYETNILRLLDCKVDHEYALNAPKS-VDYLCDSCKTHYEKLKEYLNTFEIEYVEDHT 252

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVA 326
            +      +    EV H    G + ++     + G     G      +G  G G  R++ 
Sbjct: 253 LVRGLDYYTRTVFEVRH-EGLGAQNTIAGGGRYDGLFVELGGSSVPALGFAG-GIERIIL 310

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+               +    + L+ +    +       ++   L K G  V  D M  
Sbjct: 311 ALKAEE---------IEIPIKNVHLVYVVTLGEKAFADGVQLAVELRKKGLSVDVDIMDR 361

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++  Q   A  +G    VI+G + +    V ++   TG + ++  +  ++Y + R S +
Sbjct: 362 KLSGQLKHAHRMGSRYAVIIGDEELEKGIVILRDLETGDQVEVDRDFAVDYIAERVSKD 420


>gi|315222160|ref|ZP_07864069.1| seryl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188786|gb|EFU22492.1| seryl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 425

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHQKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEHSYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|322391441|ref|ZP_08064910.1| serine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321145524|gb|EFX40916.1| serine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 424

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGAKLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYDELEKMVGNAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|322391061|ref|ZP_08064565.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321142291|gb|EFX37765.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 446

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + EE  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLEEHGKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKF-AKPEESYDELEKMVVNAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRD 390


>gi|18976636|ref|NP_577993.1| histidyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|32130125|sp|Q8U431|SYH_PYRFU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|18892205|gb|AAL80388.1| histidyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 432

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/456 (16%), Positives = 149/456 (32%), Gaps = 68/456 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  KG   +LP        V   IRE     G  E+  PT++   L+   SG  +  
Sbjct: 1   MIERV-KGTRDFLPEEMVKRRWVFERIRERFETYGFKEVLTPTMEYTKLFELRSG--EEV 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D+  + +   P     +  ++ +  +     P  +Y I   FR E  P+ G 
Sbjct: 58  VKQLYAFKDKGGRDVSLRPDMTSSVARLYVNMFQ-TAPKPIKWYYIANMFRYEE-PQSG- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R REF              +      +   ++  +   GL+   +      +  + +  
Sbjct: 115 -RYREFWQAGVELIGSDKVEADAE---VIALFVESYLATGLREFTVNIGDRILLDEFAKM 170

Query: 210 FIVLADTGETQVFC--SKDFMDFPIPSENTDFDDIISLNSI-----------------VE 250
             V  D G  ++     K   +  I +      D   +  +                  E
Sbjct: 171 LGVKDDIGLMRIIDKKDKLPQEDFINALKEFGLDKNGIEKVLELINIKGKPDEVLPLAEE 230

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----- 305
            +T+  A         L D L   +      I++G    F    S+   A          
Sbjct: 231 LFTSEVAKNEINRLYALIDLLEAYEVKDWIRIDLGIARGFDYYTSIVFEAIAPNDLGIGS 290

Query: 306 --------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                          GK        + IG  R++  +     + KG+I    +AP  + +
Sbjct: 291 IGGGGRYDNLIEVFGGKPTPA--TGFAIGIERLIPIL-----EAKGLIPEVQIAP-DVYV 342

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVG 407
           + I    +  +    +I   L K G         E +G +       A+ +G    +IVG
Sbjct: 343 VPIG---ERMKKVAIRIATSLRKSGIKTEI----ELMGRKLKKAMDYANKVGVKKTIIVG 395

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            K +    V ++   +G + ++ +++++ +  +   
Sbjct: 396 EKDLERGVVTVRDMESGEQNEVKIDDIVEFMKNALK 431


>gi|254167523|ref|ZP_04874375.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623786|gb|EDY36349.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 549

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/526 (15%), Positives = 164/526 (31%), Gaps = 122/526 (23%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G Y + PLG    +N+  + ++E   + G + +  P +    +++ SG  + +   M+R 
Sbjct: 22  GFYDYGPLGAALKENILKVWKDEFVIKDGLLMLDGPNIGPELMYIASGHAEKFADYMVRC 81

Query: 97  A----------------------DRND------KAMIYGP------THEEVMTDIFRSHI 122
                                  D+        +  I  P      T  E    +F + +
Sbjct: 82  KKCGHVFRADGLLKGVVENPEKLDKKGISKAIKEHGIKCPDCGGELTEPESFHLMFSTTV 141

Query: 123 -------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                                     +   LP    QI   FR+E+ PR G++R REF M
Sbjct: 142 GLDKRAFLRPETAQGIFVNFPIMYRLNREKLPLGVAQIGKGFRNEISPRQGLLRLREFNM 201

Query: 158 KDAYSFD----------------------------LTPEGSKHSYNKMFVSYL-----RI 184
            +   F                              T E  + +     ++Y      + 
Sbjct: 202 AEIELFVDPYDEDILNDLEDVNLHLLTREGEELKLSTKEAVERNLMNAHIAYYMAKIVKF 261

Query: 185 FHRLGLKSIPMRA----------------ESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
              LG+    +R                 +   +      E   +AD G+  +     + 
Sbjct: 262 LDTLGIDLNRVRFRQHFKEELAHYSRDTWDCEILLSSGWVEVTGIADRGDYDLKRHMTYS 321

Query: 229 DFPIPSENTDFDDIISLNSI---VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              + +     +             +   P          ++ +S+          I+  
Sbjct: 322 GRDLTAIRRFKEPKKIKIKKLRARMEILGPMFKKDAKKIAEILESMEYVDGNIEIEIDGK 381

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG------KGII 339
           ++      Y + +     G  G+     +     G  R++ AV+E S         K + 
Sbjct: 382 NVKIPRDAYEIKIEEEVIG--GERFVPHVIEPSFGIDRILYAVLEHSFYEREDTGYKVLK 439

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +AP K+++  + A D         +  ++ + G   ++DD G  IG ++A AD +G
Sbjct: 440 LKPKIAPIKVAIFPLMAKD-GLDTVARDVLNKIREGGITSYYDDSG-SIGRRYARADEIG 497

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P  + V  + + D+ V I+ R +  ++ + ++ +           
Sbjct: 498 VPFCITVDYESLKDNTVTIRERDSAKQKRVRIDAIPKILEDLVDER 543


>gi|187918238|ref|YP_001883801.1| glycyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|238689287|sp|B2S075|SYG_BORHD RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|119861086|gb|AAX16881.1| glycyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 445

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 152/485 (31%), Gaps = 113/485 (23%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G++ + PLG +   N+     +    +    + +    L  
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGVWDYGPLGIELKQNIQKEWWKNMVYSHENVVGLDSSILMR 69

Query: 77  ADLWVESGRYDSY---------------------------------------GKEMLRLA 97
           +++W  SG  +S+                                          M +  
Sbjct: 70  SEVWTASGHVESFAELLVDCKNCKNRFKIDSIDFSKGCPNCNSMGTFTDPRSFDLMFKTN 129

Query: 98  ----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRS 152
               + +   +   P   + +   FR+ + S R  +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGAVEDSSNEIYLRPETAQGIFVNFRNVLDSTRLKVPFGIAQVGKAFRNEIVAKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P      Y      Y     RL             I G  S     
Sbjct: 190 CEFEQMEMQFF-VHPNQMDDWY------YYWQQKRLNFF--------IEILGIKSDNLRF 234

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               G+     +K  +D                  I  ++   +     +HN   +D   
Sbjct: 235 KEHKGDELAHYAKAAID------------------IEYKFPFGFQEIEGIHNRGNYDLSQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             K      +   H    G +Y                   +    +G  R V   +  +
Sbjct: 277 HAKFCGKPKLFEYHDLISGDRY----------------IPYVIETSLGLTRSVLMTLCDA 320

Query: 333 HDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +  +          +     +AP+K++++ +   D    +   K++ + S     +F+DD
Sbjct: 321 YAHEELEGGDKRIVLRLHPKIAPYKVAILPLVKKD-GLPELARKVFMQFSD-DFYMFYDD 378

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               IG ++   D +G P  V V    + +  V ++HR T  +  + + ++ +Y      
Sbjct: 379 -NGTIGKRYRRQDEIGTPYCVTVDYDSIENKTVTLRHRDTMTQVRIPINDLYSYVRTEIL 437

Query: 444 NNRPV 448
           N + V
Sbjct: 438 NYKGV 442


>gi|225027257|ref|ZP_03716449.1| hypothetical protein EUBHAL_01513 [Eubacterium hallii DSM 3353]
 gi|224955410|gb|EEG36619.1| hypothetical protein EUBHAL_01513 [Eubacterium hallii DSM 3353]
          Length = 462

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 124/365 (33%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++  + S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVARTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P+     +       +     LGLK                
Sbjct: 214 FTFRTREFEQMELEFF-CKPDTDLEWFAYWKDFCVNWLKDLGLKD--------------- 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E  +     E   F SK   D                   +  +            +  
Sbjct: 258 EELRIRDHDKEELSFYSKATSDIE----------------FLFPFGWGELWGIADRTDYD 301

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +   E                            F  A+ K +   +    +GA RV  A
Sbjct: 302 LNCHQEVSGQDL--------------------TYFDDAEKKKYIPYVIEPSLGADRVTLA 341

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + I          +  ++AP K+ ++ +        +  EKIY  LSK+  +
Sbjct: 342 FLCAAYDEEEIKDGETRNVMHFHPAIAPVKVGILPLSKK---LNEGAEKIYHELSKI-YN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V      V D  V ++ R T  +E + +E++ +Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPYCVTYDFDSVEDGAVTVRDRDTMEQERIKIEDLKDYF 456

Query: 439 SHRFS 443
           + +F+
Sbjct: 457 AEKFN 461


>gi|145224391|ref|YP_001135069.1| histidyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|145216877|gb|ABP46281.1| histidyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
          Length = 420

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 137/433 (31%), Gaps = 41/433 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            +  KG+  + P        V + +     R G  ++ +P  +   L+        D   
Sbjct: 5   FKAPKGVPDYFPPDSAEFVAVRSGLLTAARRAGYGDIELPIFEDTALFARGVGESTDVVS 64

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR ++++   P     +      H      LP         FR E RP+ G  
Sbjct: 65  KEMYTFADRGERSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLCYSGPFFRYE-RPQAG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 122 RYRQLQQVGIEAIGVDDPALDAEVMAVADA---GFRSLGLDGFRLEITSLGDDSCRPQYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     ++      +  +     ++ +   ++    +  A       
Sbjct: 179 ELLQEFLFKLDLDEETRQRAQLNPLRVLDDKRPHVREMTANAPVMLDHLSDAAKEHFDTV 238

Query: 265 EKLFDS---LPENKRVSARGIEVGH--IFY-----FGTKYSLPMSATFKG--ADGKDHYV 312
               D+            RG++      F       G +  +     + G  A      +
Sbjct: 239 LAHLDALSVPYVINPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAQLGGRDL 298

Query: 313 QMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
               +G+G  R + A+  E    G         A   +  + + A  +V       + A+
Sbjct: 299 SGIGFGLGVDRTLLALRAEGKAAG-------ETARVDVYAVPLGADAKVRLAV---LAAQ 348

Query: 372 LSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L   G  V     D   + G+    AD  G  + ++ G + +    V +K   TG + D+
Sbjct: 349 LRAAGVRVDVAYGDRSLK-GAM-KGADRSGASIALVAGDRDLEAGTVGVKSMATGEQVDV 406

Query: 430 SLEEVINYASHRF 442
           + ++V+     R 
Sbjct: 407 ASDDVVAEVLSRL 419


>gi|125623578|ref|YP_001032061.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|166222737|sp|A2RJ76|SYS_LACLM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|124492386|emb|CAL97327.1| SerS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070342|gb|ADJ59742.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 423

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 11/212 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G +    +   + +E  + G  EM  P + + +    +G+Y  + ++   L D  
Sbjct: 165 FYKGAGARLERALYNFMLDEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKD-- 222

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D+  +  PT E  +T+ +R  I     LP  F  +   FR E     R   G++R  +F 
Sbjct: 223 DRGFVLIPTAEVPLTNYYRGEILDGSELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   P+ S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 283 KVEMVKF-AKPDQSYDELEKMTANAENILQKLGLAYRVVALSTGDMGFSAAKTYDLEVWI 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            A     ++    +  DF        + D   
Sbjct: 342 PAQNTYREISSCSNCEDFQARRAQIRYRDEDG 373


>gi|15673694|ref|NP_267868.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281492294|ref|YP_003354274.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|30173210|sp|Q9CEX2|SYS_LACLA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|12724729|gb|AAK05810.1|AE006401_11 seryl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375958|gb|ADA65449.1| Seryl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|326407178|gb|ADZ64249.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 423

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 11/212 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G +    +   + +E  + G  EM  P + + +    +G+Y  + ++   L D  
Sbjct: 165 FYKGAGARLERALYNFMLDEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKD-- 222

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D+  +  PT E  +T+ +R  I     LP  F  +   FR E     R   G++R  +F 
Sbjct: 223 DRGFVLIPTAEVPLTNYYRGEILDGAELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   P+ S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 283 KVEMVKF-AKPDQSYDELEKMTANAENILQKLGLAYRVVALSTGDMGFSAAKTYDLEVWI 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            A     ++    +  DF        + D   
Sbjct: 342 PAQNTYREISSCSNCEDFQARRAQIRYRDEEG 373


>gi|54025634|ref|YP_119876.1| histidyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|81679911|sp|Q5YTH9|SYH_NOCFA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|54017142|dbj|BAD58512.1| putative histidyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 422

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 134/434 (30%), Gaps = 43/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P G      V   +       G   + +P  +   L+        D   
Sbjct: 7   FSAPKGVPDYVPPGSAEFVAVRDALLRAARLAGYGHIELPIFEDTGLFARGVGESTDVVT 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR ++++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGERSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLVYSGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGVDDPALDAEVIAIADA---GFRSLGLDGFRLELTSLGDDTCRPRYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+      E     ++      +  +  +  ++++   ++    +  A       
Sbjct: 181 ELLQEFLFGLPLDEETRRRAELNPLRVLDDKRPEVRELLADAPLMIDHLSESAKAHFEQV 240

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     V+ R             E  H    G +  +     + G  A      
Sbjct: 241 LGHLDALGVPYVVNPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQP 299

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    +G+G  R + A+  E    G     P     F + L       +  +     + A
Sbjct: 300 LSGIGFGLGVDRTMLALQAEGKSAGD----PARCDVFGVPL------GEAAKQRMVVLAA 349

Query: 371 RLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +L   G  V     G   G +     AD  G    +++G + +++  + +K   TG +  
Sbjct: 350 QLRAAGVRVDLAYGGR--GVKGAMKAADRSGARYTLVLGDRDLAEDTIGVKDMSTGDQRQ 407

Query: 429 MSLEEVINYASHRF 442
           + L EV+       
Sbjct: 408 VPLGEVVGVLRSEL 421


>gi|223889046|ref|ZP_03623637.1| glycyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|223885862|gb|EEF56961.1| glycyl-tRNA synthetase [Borrelia burgdorferi 64b]
          Length = 445

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 146/478 (30%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     I    +                  +F++H
Sbjct: 70  PEIWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEVYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +  +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKISPDR--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       +   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKAAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             K  +   +   H      KY        + + G    V M      +        E  
Sbjct: 277 HAKFSNKPKVFEYHDLLTKDKYVP---YVIETSAGLTRSVLMTLCDAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELT-EIARRIYMELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V +    + D  V ++ R    ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNNMTQKRIFINDLYSYIKTEILNYKE 441


>gi|160932389|ref|ZP_02079779.1| hypothetical protein CLOLEP_01224 [Clostridium leptum DSM 753]
 gi|156868348|gb|EDO61720.1| hypothetical protein CLOLEP_01224 [Clostridium leptum DSM 753]
          Length = 442

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 144/450 (32%), Gaps = 48/450 (10%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
            G++ +  +G    LP        V   +R   +  G  E+  P  +  +L+  S     
Sbjct: 10  MGLLTKGPRGTQDVLPKESYQWQVVEDAMRRICSAYGFKEIRTPVFEHTELFQRSVGETT 69

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    D+  +++   P            H      LP   Y     +R E +P+
Sbjct: 70  DVVQKEMYTFQDKGGRSITLRPEGTAGAVRAMVEHGLYNDALPIKAYYFTSCYRYE-KPQ 128

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
            G  R REF       F      +      +      +F  LG+K++ +   S       
Sbjct: 129 AG--RLREFHQFGVEVFGAGAPSADAE---VICLAKSVFDVLGVKNLSLEINSIGCPKCR 183

Query: 201 PIGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   E+         ET +          +  ++     I     ++  +      
Sbjct: 184 AEYHKALKEYFQGYQDQLCETCLGRLNRNPMRILDCKSPVCSKIAEGAPVMLDYLCGECR 243

Query: 259 TSDVHNEKLFDSLPENKR---VSARGIEVG--HIFYF-------------GTKYSLPMSA 300
                 +   D++           RG++     +F F             G +Y      
Sbjct: 244 EHFEGVKTCLDTMGIAYTVNPTIVRGLDYYTKTVFEFVSTGIGAQGTVCGGGRYD----- 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G      +G +G+G  R++  + +            +V P    L      D  
Sbjct: 299 GLVEEIGGPSMPSLG-FGLGLERLMLVLAQPDSA------LAAVTPPTCDLYVASLGD-K 350

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +    ++   +     +   D +G  + +Q   AD LG    +++G   + + K ++K+
Sbjct: 351 AKAQAFRLAELVRTTSLNAECDLVGRSLKAQMKYADKLGAKFSLVLGDSELEEQKAKVKN 410

Query: 421 RLTGIREDMSL-EEVINYASHRFSNNRPVL 449
             TG ++++SL E  ++  +  + + +  L
Sbjct: 411 MATGEQKEISLGESFVDEFTQIYFDAQSSL 440


>gi|302871212|ref|YP_003839848.1| histidyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574071|gb|ADL41862.1| histidyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 421

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 137/434 (31%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE     G  E+  PT +  +L+        D   K
Sbjct: 4   QAPKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTELFQRGVGETTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P        +F  H  + R +P  FY I   FR E     G  R
Sbjct: 64  EMYTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYE--NTQG-GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF      +F  +   +      +       F  +GL +I +   S  IG  +  +  
Sbjct: 121 FREFHQFGIENFGSSSPVTDAE---VISLAYNFFTSIGLDNITVNINS--IGCPVCRKEY 175

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V       + F +          +  D + +  L+   E             +    D  
Sbjct: 176 V---KNLKEYFSANSQKLCATCHQRLDKNPMRILDCKEENCKLVAKDAPKPIDYLCDDCK 232

Query: 272 PENKRVSARGIEVGHIFYF-------GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAM 322
              ++V    ++   + Y        G  Y            +D +      G Y     
Sbjct: 233 NHFEKVKTY-LDSAMVAYKVDPFIVRGLDYYTKTVFEVVVTVSDKELAICGGGRYDNLIE 291

Query: 323 RV----VAAV--------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           ++    +A +        +    +  G++    V P    +      D   R    +I  
Sbjct: 292 QIGGPSIAGIGFAIGVERLLMLLEQNGLL---PVKPQIPEVFVAVVGDNSIR-KAFEIAN 347

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G     ++M   + SQ   AD LG    +I+G   ++    +I++  T   E + 
Sbjct: 348 KLRFEGISTVIEEMSRSLKSQMKYADKLGCQFSIIIGDDEIAKGVCKIRNMRTSSEEIVE 407

Query: 431 LEEVINYASHRFSN 444
           ++   +Y   +   
Sbjct: 408 IKNACHYLKKQVQK 421


>gi|116512562|ref|YP_811469.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123025253|sp|Q02XG6|SYS_LACLS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116108216|gb|ABJ73356.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 423

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 11/212 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G +    +   + +E  + G  EM  P + + +    +G+Y  + ++   L D  
Sbjct: 165 FYKGAGARLERALYNFMLDEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKD-- 222

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D+  +  PT E  +T+ +R  I     LP  F  +   FR E     R   G++R  +F 
Sbjct: 223 DRGFVLIPTAEVPLTNYYRGEILDGSELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   P+ S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 283 KVEMVKF-AKPDQSYDELEKMTANAENILQKLGLAYRVVALSTGDMGFSAAKTYDLEVWI 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            A     ++    +  DF        + D   
Sbjct: 342 PAQNTYREISSCSNCEDFQARRAQIRYRDEDG 373


>gi|170289504|ref|YP_001739742.1| histidyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|229558740|sp|B1L829|SYH_THESQ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|170177007|gb|ACB10059.1| histidyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 420

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 140/419 (33%), Gaps = 41/419 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  P  +  +L+V S     D   KEM    D+  +++   
Sbjct: 20  WRYVEETFRNVCESAGIEEIRTPIFEQTELFVRSVGEESDIVQKEMYTFQDKAGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    R     +Y I   FR E +P+ G  R R+F            
Sbjct: 80  PEGTAPVVRAFLENSLIDRGFQQRYYYIGPMFRYE-KPQSG--RLRQFHQVGFEIIGPES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
             +      +  ++LR   RLGL    +   S                  G +  +L  +
Sbjct: 137 PKADFEVIMLVDTFLR---RLGLTKYKIHLNSIGCPVCRKNYREALKEYYGQVLDNLCDD 193

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +T   ++   K   ++ + +  +  D +        +    Y  T ++   +   
Sbjct: 194 CKRRYETNILRLLDCKVDHEYSLNAPKS-VDYLCDSCRAHYKKLKEYLNTFEIEYVEDHT 252

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVA 326
            +      +    EV H    G + ++     + G     G      +G  G G  R++ 
Sbjct: 253 LVRGLDYYTRTVFEVRH-EGLGAQSAIAGGGRYDGLFAELGGSSVPALGFAG-GIERIIL 310

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+       +GI  P       + L+ I    +       ++   L K G  V  D M  
Sbjct: 311 AL-----KAEGIEIPMKN----VHLVYIATLGEKAFMDGVRLAGELRKKGLSVDVDIMDR 361

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++  Q   A  +G    VI+G + +    V ++   TG + ++  +   +Y + R S +
Sbjct: 362 KLSGQLKHASRMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSKD 420


>gi|310658605|ref|YP_003936326.1| histidyl tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825383|emb|CBH21421.1| histidyl tRNA synthetase [Clostridium sticklandii]
          Length = 420

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/418 (15%), Positives = 132/418 (31%), Gaps = 30/418 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP      + V  + ++  +  G  E+  P  +  +L+        D   KEM     ++
Sbjct: 13  LPKDINKWNYVETLFKKVCSDFGYGEIRTPDFEYTELFKRGVGDTTDIVQKEMFTFEAKS 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P     +   +  +       P  F+ I   FR E +P+ G  R R F     
Sbjct: 73  KESITLKPEGTAPVVRAYIENKLYADPQPSKFFYITPCFRYE-KPQAG--RLRAFHQFGI 129

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-HEFIVLADTGET 219
             F      +      +    +  F RL +    +      +G   S  E+  +      
Sbjct: 130 EIFGTDSSSADAE---VISLAVEFFRRLEIDD-KIELRINSVGTLESRKEYNKILRDYLK 185

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             + +          +N          +  E         + +  E         K ++A
Sbjct: 186 PNYDNLCQTCKDRFEKNPMRIIDCKNETCKEISHDAPLMINHLDEESKLHFEKLKKYLTA 245

Query: 280 RGIEVG---HIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRV----VAAVIE 330
             I+     HI   G  Y               +      G Y      +    +  V  
Sbjct: 246 MKIDYTIDPHIVR-GLDYYTKSAFEFVSNDIGSQSTVCGGGRYDGLIEELGGPKIPGVGF 304

Query: 331 SSHDGKGIIWPDSV------AP-FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                + I+  D++       P   + + ++    +       KI   L KVG     D 
Sbjct: 305 GLGIERLILLLDNLEKDINQQPSLDVFIASMG---EAAEIEAFKILYDLRKVGISCEKDH 361

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +G+ I +QF  AD L     +++G   +++  V +K      +  + L++++NY  + 
Sbjct: 362 VGKSIKAQFKYADKLNSRFTIVLGDDEINNQIVTVKDMSNSTQTQIKLDDIVNYFKNL 419


>gi|296331700|ref|ZP_06874169.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675342|ref|YP_003867014.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151295|gb|EFG92175.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413586|gb|ADM38705.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 424

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 138/439 (31%), Gaps = 48/439 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +   +G    LP        V  I+R+        E+  P  +  +L+        D 
Sbjct: 1   MGYSIPRGTQDILPGESDRWQFVEQIMRDTCRTYQYKEIRTPIFEHTELFARGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P         F  + + +    P   Y +   FR E RP+ 
Sbjct: 61  VQKEMYTFQDRKGRSLTLRPEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYE-RPQT 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGD 205
           G  R R+F      +              +    + I+ + GL+++ +   S        
Sbjct: 120 G--RYRQFYQFGIEAIGSKDPAIDAE---VMALAMSIYQKAGLQNVKLVINSLGDQESRK 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIP---------SENTDFDDIISLNSIVEQWTAPY 256
              E +V       + FCS                    + +               +  
Sbjct: 175 SYREALVKHFEPRIEEFCSDCQSRLHTNPLRILDCKKDRDHELMKTAPSILTYLNEESAA 234

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIE---------VGHIFYFGTKYSLPMSATFKG--- 304
                           E      RG++         + +   FG   +L     + G   
Sbjct: 235 YFEKVKQYLNDLGISYEIDPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVE 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHD---GKGIIWPDSVAPFKISLINIKAHDQVC 361
             G      +G + +   R++AA+     +    +GI            ++ +    +  
Sbjct: 295 QIGGPEAPGIG-FAMSIERLLAAIDAEKRELPVDQGI---------DCYIVTLG---EKA 341

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D    +  +L + G     D   +++  QF  AD L      I+G   ++ +K+ +K  
Sbjct: 342 KDYSVSLVYKLREAGISSEIDYENKKMKGQFKTADRLNARFIAILGEDELAQNKINVKDA 401

Query: 422 LTGIREDMSLEEVINYASH 440
            TG + +++L+E I+    
Sbjct: 402 QTGEQIEVALDEFIHVMKA 420


>gi|222529399|ref|YP_002573281.1| glycyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456246|gb|ACM60508.1| glycyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 434

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 144/479 (30%), Gaps = 117/479 (24%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S   G     + + PLG +  +N+  +  +   Q R   + +    L +
Sbjct: 10  LCKRRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMN 69

Query: 77  ADLWVESGRYDSYGK--------------------------------EML---------R 95
             +W  SG   ++                                   M           
Sbjct: 70  PKVWEASGHLSNFSDPMADCKLCKKRWRVDQLQEYKCPECGGELTEARMFNLMFKTFMGP 129

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D +    +   T + +  +         + +PF   QI   FR+E+ P   + R+REF
Sbjct: 130 VEDESAVVYLRPETAQGIFVNFVNVQQTMRKKIPFGIAQIGKSFRNEITPGNFIFRTREF 189

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +                                                 E+ V   
Sbjct: 190 EQMEI------------------------------------------------EYFVKPG 201

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T E   +  K +++  I           +L                  + +    +  ++
Sbjct: 202 TDE---YWHKHWIEQRINWYYNLGIRKENLRVREHGKDELAHYAKACVDIEYLFPMGWSE 258

Query: 276 RVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                GI     F      KYS      F     + +   +     G  R + A +  ++
Sbjct: 259 LE---GIANRTDFDLTQHQKYSGENLTYFDDETKQRYIPYVIEPSAGVDRSLLAFLIDAY 315

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + + I             +++P K ++  +   +++ +    +IY  L      V +D+ 
Sbjct: 316 EYQQIDKDDFRVVLHLHPAISPVKAAVFPLMKKEELVK-KAREIYNELKYKWI-VQYDES 373

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  IG ++   D +G P  + V  + + D  V I+ R T  +  + ++E+I Y   R  
Sbjct: 374 G-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQIRVHIKEIIPYLEERIE 431


>gi|256847119|ref|ZP_05552565.1| histidyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715783|gb|EEU30758.1| histidyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 430

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 155/449 (34%), Gaps = 56/449 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP      + V  + R+  ++ G   +  P  +S D++  S     D 
Sbjct: 1   MRYQRPKGTADILPGDSAKWEYVEKLARKIFHQYGYQGIRTPLFESYDIFARSAGDTSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F  +       P     Y +   FR E RP+
Sbjct: 61  VTKEMYDFHDKGDRHIALRPEGTAGVVRAFNENKLYGPEYPKPYKVYYVGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF      +F      +      M    L++F +LGL  + +   +       
Sbjct: 120 SG--RQREFHQIGVEAFGSDNPATDVEVIAM---ALQLFTKLGLTDLRVAVNTLGDQKSR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS +     +    +V  SKD  D    ++     D ++  + 
Sbjct: 175 DDYRTALINYLKPHYDELSEDSQERLEKNPLRVLDSKDPRDQKFVADAPSILDYLTPEA- 233

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A +     + +    D + +      RG++    +Y  T + + + A   G +G 
Sbjct: 234 ----NARFEQVKQMLDVLGIDYVVDPDM--VRGLD----YYNHTIFEVMVKAKSLG-NGY 282

Query: 309 DHYVQMGSYGIGAMRV-------VAAVIESSH-----DGKGIIWPDSVAPFKISLINIKA 356
                 G Y     ++       V   I         + +GI  P       + +  +  
Sbjct: 283 TTICGGGRYSGLVEQLGGPDLSGVGFGIGEERLLLLLNDEGIQLPTD---DHLDVYVVGI 339

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D    +   ++       G     D MG +  +QF  AD +   + + VG + + +  V
Sbjct: 340 GDDTNLE-SLQLVQAARHAGLIADRDFMGRKPKAQFRTADRMHARVVLTVGKRELEEGNV 398

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +K   TG    + L +++N  ++ F  +
Sbjct: 399 HLKVMATGKEVSVKLADLLNDFANVFEEH 427


>gi|218249531|ref|YP_002374888.1| glycyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226321686|ref|ZP_03797212.1| glycyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226737060|sp|B7J1U3|SYG_BORBZ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|218164719|gb|ACK74780.1| glycyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226232875|gb|EEH31628.1| glycyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 445

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 146/478 (30%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     I    +                  +F++H
Sbjct: 70  PEIWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEVYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +  +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKISPDR--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       +   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKAAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             K  +   +   H      KY        + + G    V M      +        E  
Sbjct: 277 HAKFSNKPKVFEYHDLLTKEKYVP---YVIETSAGLTRSVLMTLCDAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELT-EIARRIYMELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V +    + D  V ++ R    ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNNMTQKRIFINDLYSYIKTEILNYKE 441


>gi|319947603|ref|ZP_08021833.1| serine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319746291|gb|EFV98554.1| serine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 446

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---YVLIPTAEVPLTNYYRDEIIDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    M   +G +G   +     E  +
Sbjct: 303 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVMALSTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRD 390


>gi|229076032|ref|ZP_04209003.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock4-18]
 gi|228707066|gb|EEL59268.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock4-18]
          Length = 476

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 148/451 (32%), Gaps = 52/451 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            +      M  Q  +G    LP   +    +    RE   R    E+  P  +  +L++ 
Sbjct: 46  KQFEEELNMSIQIPRGTQDILPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLR 105

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQ 136
                 D   KEM    DR ++++   P   E    + RS++++        P   Y I 
Sbjct: 106 GVGDTTDIVQKEMYSFQDRGERSLTLRP---EGTAPVVRSYVENKMFGDATQPTKLYYIG 162

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E RP+ G  R R+F+     +              +    +  +  +GLK+I + 
Sbjct: 163 QMFRYE-RPQAG--RYRQFVQFGIEAIGSNDPAIDAE---VIALAVEFYRGMGLKNIKVV 216

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------------PSENTDFDDII 243
             S  +G   S +    A     +    +   D                   N +     
Sbjct: 217 LNS--LGDAASRQAHRDALIAHFEPRIGEFCSDCQSRLEKNPLRILDCKKDRNHELMGTA 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKY 294
              +      +            + D   E      RG++     +F        FG   
Sbjct: 275 PSITEYLNEDSAVYYDKVQELLTMMDVPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAIT 334

Query: 295 SLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +L     + G     G      +G + +   R++ A+   +     I  P         +
Sbjct: 335 TLSGGGRYNGLVQEIGGPEMPGIG-FAMSIERLIMALKAEN-----IELPIE-HSIDCYV 387

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +  +D   K+   L K G  V  D +  ++ +QF  AD L      ++G   +
Sbjct: 388 VALG---EKAKDHAAKVAFDLRKAGLLVEKDYLDRKMKAQFKSADRLNAKFVAVLGEDEL 444

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + +K   TG +E+++L+   +Y + + 
Sbjct: 445 DKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|229826225|ref|ZP_04452294.1| hypothetical protein GCWU000182_01597 [Abiotrophia defectiva ATCC
           49176]
 gi|229789095|gb|EEP25209.1| hypothetical protein GCWU000182_01597 [Abiotrophia defectiva ATCC
           49176]
          Length = 416

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 133/426 (31%), Gaps = 39/426 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI    KG   W          + AI RE  +     E+  P  +   L+  S     D 
Sbjct: 1   MITNRPKGTQDWFGENMWKRTKIEAIARELCSAYNIGEIITPAFEHTVLFNRSVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+ +   P         +  +       P   +     FR E RP+ G
Sbjct: 61  VQKEMYTFKDKGDREISLKPEGTAGTIRAYLENNLYALPQPIKMFYFTQAFRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+        F  +P        ++         R+GLK + +   S  IG     
Sbjct: 120 --RLRQHHQF-GVEFVGSPSPMVEV--ELITLVSEFIKRIGLKDVKLHINS--IGYGECR 172

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE--- 265
           +    A  G  + + ++   D  +  +      I       +        T D  +E   
Sbjct: 173 KKYNDALLGYLKGYEAELCEDCKVRMQKNPLRVIDCKVPSCKAIVEKAPRTLDFLDEECK 232

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-----------------K 308
             FD+L +         E+      G  Y       F   DG                  
Sbjct: 233 NHFDTLQKMLTELNIPFEIDTGIVRGLDYYTKTVFEFVDKDGFTLCGGGRYDGLINEIDG 292

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              +    +G+G  R++   +E      G +    +    + ++         +    +I
Sbjct: 293 KQNIPAVGFGMGIERILY-FLEKEGVSLGEMPHPRL---YVGIM-----GDEVKAKAFEI 343

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G  V  D +   + +Q   A+ LG    VI+G        V++K+  TG   +
Sbjct: 344 VTKLRNKGVIVETDYLDRSVKAQMKYANKLGVDYTVIIGQNEAESGLVKLKNMETGDETE 403

Query: 429 MSLEEV 434
           +  EE+
Sbjct: 404 VKFEEL 409


>gi|296877087|ref|ZP_06901128.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296431948|gb|EFH17754.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 446

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLDEHGKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFS-KPEESYDELEKMVVNAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRD 390


>gi|221231277|ref|YP_002510429.1| seryl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|254783052|sp|B8ZLH8|SYS_STRPJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|220673737|emb|CAR68236.1| seryl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 424

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  + + +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLANYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|225552307|ref|ZP_03773247.1| glycyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371305|gb|EEH00735.1| glycyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 449

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 147/478 (30%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     +    +                  +F++H
Sbjct: 70  PEIWRASGHVDGFSDSMVDCKDCKSRFRADFVDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEVYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +  +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKISPDR--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       +   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKAAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             K  +   +   H      KY        + + G    V M      +        E  
Sbjct: 277 HAKFSNKPKVFEYHDLLTKEKYVP---YVIETSAGLTRSVLMTLCDAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELT-EIARRIYMELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V +    + D  V ++ R +  ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNSMTQKRIFINDLYSYIKTEILNYKE 441


>gi|149007999|ref|ZP_01831556.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225856139|ref|YP_002737650.1| seryl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|225858264|ref|YP_002739774.1| seryl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|254783048|sp|C1C5E8|SYS_STRP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783496|sp|C1CIR2|SYS_STRZP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|147760511|gb|EDK67487.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225721092|gb|ACO16946.1| seryl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225725287|gb|ACO21139.1| seryl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|332076855|gb|EGI87317.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA17545]
 gi|332204437|gb|EGJ18502.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 424

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  + + +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLANYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRD 369


>gi|307243795|ref|ZP_07525926.1| histidine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492798|gb|EFM64820.1| histidine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 420

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/438 (15%), Positives = 131/438 (29%), Gaps = 44/438 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    +P      + +    R+     G  E+  P  +  +L+        D 
Sbjct: 1   MLTKAPRGTKDIIPAEAYKWNYLEEKFRDLCRLYGYEEIRTPVFEHTELFKRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR D+ +   P     +   F  +       P   + I   FR E RP+ G
Sbjct: 61  VQKEMYTFKDRGDRDLTLKPEGTAGVIRAFIENKMYAETQPTKLFYITPCFRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      +              +    ++     GLK + +   S  +G     
Sbjct: 120 --RQRQFHQFGVEAIGSDTPSLDAE---VISLAMQFLGEAGLKDLTVSINS--VGC---- 168

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA--TSDVHNEK 266
              V  +     +          +     D  D   +  I  +     A      +  + 
Sbjct: 169 --PVCREEYNRLLKDYLATKADVLCDLCNDRRDKNPMRVIDCKNETCQANIVDIPLMADH 226

Query: 267 LFDSLPENKRVSARGIEVGHIFYF-------GTKYSLPMSATFKGAD-GKDHYVQMGSYG 318
           L D+  ++ +     ++  +I Y        G  Y    +      D G    V  G   
Sbjct: 227 LCDNCKDHFKQLKAYLDEMNIKYVVDKKIVRGLDYYKRTAFEIISNDLGAQSTVCGGGRY 286

Query: 319 IGAMRVVAAVIESSHDGKGI---IWPDSVAPFKISLINIKAHDQVCRDACEK-------I 368
            G +  +      S  G G+       ++    + + N    D       +K       I
Sbjct: 287 DGLVEQIGGPSGYSGIGFGLGAERLLLTLEANGVEIGNPNHTDIFVVTIGDKAKLKSFSI 346

Query: 369 YARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKHRLTG 424
              L +       D  D   +   +++            +++G   +   K  +K+  TG
Sbjct: 347 LKDLRENHISADKDHLDRSLKAQFKYSN----KINAKYTIVIGDDELDKDKATLKNMETG 402

Query: 425 IREDMSLEEVINYASHRF 442
            ++ + + E++N      
Sbjct: 403 DQKLIKISELVNELRSVL 420


>gi|139473237|ref|YP_001127952.1| seryl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|166223299|sp|A2RCY1|SYS_STRPG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|134271483|emb|CAM29704.1| seryl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 425

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  + E       KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKSEES-YQELEKMTANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|296413606|ref|XP_002836501.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630326|emb|CAZ80692.1| unnamed protein product [Tuber melanosporum]
          Length = 267

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWD 382
               D KG++ P  VA +++ ++      +   +         + +   LS+ G  V  D
Sbjct: 1   MIHGDNKGLVLPPMVAQYQVVIVPCGLTAKTADEERKRLFQGVKDMATTLSQAGIRVKAD 60

Query: 383 DM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++  G K +   +     R TG++  + L  +       
Sbjct: 61  TRETCSPGYKFNDWELKGVPVRLEFGPKDMEKKQALSVRRDTGVKAGIPLGGLAEKVQTL 120

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 121 LGTIQKEL 128


>gi|288932487|ref|YP_003436547.1| histidyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894735|gb|ADC66272.1| histidyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 409

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 137/425 (32%), Gaps = 42/425 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKE 92
           +  +G   +LP   +    +  I RE     G  E+  PT +  +L+  +SG  +   KE
Sbjct: 4   ERPRGTRDFLPEEMEKRRELEKIFREVVELFGYREVQTPTFEHLELFTIKSG--EEIIKE 61

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +    D+  + +   P     +  +F +   S+   P  FY     FR E RP+ G  R 
Sbjct: 62  IYAFKDKGGRDLALRPELTAPVMRMFVNEC-SHLPKPLRFYYFSNCFRYE-RPQKG--RY 117

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF    A         ++     + +   R+  + G+         G +         V
Sbjct: 118 REFWQFGAELIGSNSPEAEAE---VILLSYRMLEKAGVSF---ELSIGDVNLLR----YV 167

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           L D  E +       +D        +         I E         S    E++ D   
Sbjct: 168 LRDIPEKEAAM--RLIDKEEFETLRNLLAKYDREEIYETILQLGEIESVEEAEEVVDYDF 225

Query: 273 ENKRVSARGIEVGHIFYF-------GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + +     ++   + YF       G  Y       +            G       ++ 
Sbjct: 226 SHLKKLCEILDALELKYFVDFTVARGLDYYTGTVFEYYAEGLGAQKQICGGGSYRLAKLF 285

Query: 326 A---------AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
                     A+            P    P  + +  +++ D        KI  RL + G
Sbjct: 286 GGEDVPGTGFAIGFDRVMELFTKSPKYEPPV-VVVSLVESKD------AFKIAERLRENG 338

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  D MG  +  Q + A+ +     VI+G K +      IK  +TG ++ +S EE + 
Sbjct: 339 VKVVVDVMGRNLKKQMSFANDISAEYAVIIGKKELESGTFSIKDLVTGKQKSLSFEEAVE 398

Query: 437 YASHR 441
               +
Sbjct: 399 LIKSK 403


>gi|15594716|ref|NP_212505.1| glycyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|195941279|ref|ZP_03086661.1| glycyl-tRNA synthetase [Borrelia burgdorferi 80a]
 gi|216264354|ref|ZP_03436346.1| glycyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|221217806|ref|ZP_03589274.1| glycyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224533132|ref|ZP_03673732.1| glycine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224533837|ref|ZP_03674425.1| glycyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225549029|ref|ZP_03770004.1| glycyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|6226178|sp|O51344|SYG_BORBU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|2688266|gb|AAC66743.1| glycyl-tRNA synthetase (glyS) [Borrelia burgdorferi B31]
 gi|215980827|gb|EEC21634.1| glycyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|221192483|gb|EEE18702.1| glycyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224511859|gb|EEF82260.1| glycine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224513130|gb|EEF83493.1| glycyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225370255|gb|EEG99693.1| glycyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|312148086|gb|ADQ30745.1| glycyl-tRNA synthetase [Borrelia burgdorferi JD1]
 gi|312149335|gb|ADQ29406.1| glycyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 445

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     I    +                  +F++H
Sbjct: 70  PEIWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEVYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +  +           F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKISPDR--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       +   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKAAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             K  +   +   H      KY        + + G    V M      +        E  
Sbjct: 277 HAKFSNKPKVFEYHDLLTKEKYVP---YVIETSAGLTRSVLMTLCDAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDKRIVLRLHPKLAPYKIAIFPLVKKVELT-EIARRIYMELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V +    + D  V ++ R +  ++ + + ++ +Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNSMTQKRIFINDLYSYIKTEILNYKE 441


>gi|163816527|ref|ZP_02207891.1| hypothetical protein COPEUT_02717 [Coprococcus eutactus ATCC 27759]
 gi|158448227|gb|EDP25222.1| hypothetical protein COPEUT_02717 [Coprococcus eutactus ATCC 27759]
          Length = 471

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 123/368 (33%), Gaps = 74/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 160 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 219

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +       +     LG+K   MRA       D S
Sbjct: 220 FTFRTREFEQMELEFF-CKPGTDMEWFEYWRSFCINWLKDLGIKDDEMRA------RDHS 272

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE +     G T +     F       E     D    +    Q T+  +          
Sbjct: 273 HEELCFYSKGTTDIEYLFPFGW----GELWGIADRTDYDLTQHQNTSGESMEY------- 321

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                             F     + +   +    +GA RV  A
Sbjct: 322 ----------------------------------FDDETKEKYIPYVIEPSLGADRVTLA 347

Query: 328 VIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            + +++D + I             +   +AP KI ++ +        +  EKIYA LSK 
Sbjct: 348 FLCAAYDEENIGTEEKPDIRTVLHFHPQLAPVKIGVLPLSKK---LNEGAEKIYAELSKY 404

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +  +DD G  IG ++   D +G P  V      V D  V ++ R T  +E + +E++ 
Sbjct: 405 -YNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSVEDGAVTVRDRDTMEQERVKIEDLK 462

Query: 436 NYASHRFS 443
            Y   +F 
Sbjct: 463 AYFEKKFE 470


>gi|124485976|ref|YP_001030592.1| glycyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|124363517|gb|ABN07325.1| glycyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 576

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 82/560 (14%), Positives = 159/560 (28%), Gaps = 138/560 (24%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L  R G +   S       G   + PLG      + A  R     + G  E+  PT+  
Sbjct: 13  ELARRRGFVWPSSEIYGSVAGFIDYGPLGAMLKRRIEATWRRFYVVQEGYYEIECPTVGI 72

Query: 77  ADLWVESGRYDSYGKEMLR-----------------------LADRNDKAMIYGPTHEEV 113
             ++V SG    +  +M +                          + +   +        
Sbjct: 73  EPIYVASGHVGGFSDKMFQCPHCQEFLRADHVAEAFGIPHAGTMSKEELQNVLVDKECPA 132

Query: 114 ------------MTDIFRSHI--------------------------KSYRN-LPFTFYQ 134
                          +F + I                          + YR+ LPF   Q
Sbjct: 133 CGKVLGEVEVFDFNLMFTTSIGPGGQRKGYLRPETAQGMFVDFPRLLRFYRDHLPFGAVQ 192

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE-------------------------- 168
           +   +R+E+ PR G++R REF   +A  F    E                          
Sbjct: 193 VGKSYRNEISPRQGMIRLREFTQAEAEIFVHPEEKDHPNFSRYADYKMPLWGIAQQEKET 252

Query: 169 --------------GSKHSYNKMFVSY-LRIFHRLGLK-----SIPMRAESGPIGGDLSH 208
                            + Y   +V+    I   +G             +          
Sbjct: 253 PAVVKSMREAVDEGIIANEYVAYYVAMTHDILCTVGFNPDKIRFRQHMPDERAHYATDCW 312

Query: 209 EFIVLAD-TGETQVFCSKDFMDFPIPSENT-----DFDDIISLNSIVEQWTAPYAATSDV 262
           +   L+D  G  ++    D  D+ + + +      +   +    +      A       +
Sbjct: 313 DAEALSDRFGWVEIVGIADRTDYDLKAHSRVSGQKNTVFVQYPEAKKVHHKAIVPNFGKL 372

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFY--FGTKY-SLPMSATFKGAD----GKDHYVQMG 315
                  + P ++++     E   I     G +    P   T K       G+D    + 
Sbjct: 373 GPAFKGKAKPISEQMLTATPEADGIHLTIDGEEILVGPEMYTVKDEIVDVFGEDVMPHVI 432

Query: 316 SYGIGAMRVVAAVIESSHDGK--------GIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               G  R+   V+E ++            + +   VAP +++++ + A D    +  + 
Sbjct: 433 EPSYGIDRMCYMVLEHAYAEDVADGEARTVMRFKKGVAPIQVAVLPLMARD-GLDEIAKN 491

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L   G    +DD G  IG ++   D +G P  + V      D+ V ++ R +  + 
Sbjct: 492 LVLELQNEGIQTEYDDAGA-IGRRYRRQDEIGTPYCITVDYDTKDDASVTLRDRDSMQQI 550

Query: 428 DMSLEEVINYASHRFSNNRP 447
                 V+           P
Sbjct: 551 RGPAAAVLKALPDLLKGKLP 570


>gi|325688711|gb|EGD30720.1| serine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 425

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDSKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|118473178|ref|YP_887295.1| histidyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|118174465|gb|ABK75361.1| histidyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 426

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 134/437 (30%), Gaps = 49/437 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG+  +LP        V   +     R G  ++ +P  +   L+        D   
Sbjct: 10  FQAPKGVPDYLPPDSAQFVAVRDGLLSAARRAGYGDIELPIFEDTALFARGVGESTDVVS 69

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 70  KEMYTFADRGDRSVTLRPEGTAGVIRAVIQHRLDRGALPVKLCYSGPFFRYE-RPQAG-- 126

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 127 RYRQLQQVGVEAIGVDDPALDAEVIAVADA---GFRSLGLSGFRLEITSLGDDTCRPAYR 183

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     ++      +  +     ++ +   ++    +  A       
Sbjct: 184 ELLQEFLFKLDLDEETRRRAEINPLRVLDDKRPHVREMTADAPLMLDHLSDSAKEHFETV 243

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
           +   D+L     ++ R             E  H    G +  +     + G         
Sbjct: 244 QTYLDALGVPYVINPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRQLGGQD 302

Query: 312 VQMGSYGIGAMRVVAAV----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           V    +G+G  R + A+    +     G             + +  +        +   K
Sbjct: 303 VSGIGFGLGVDRTLLALQAEGVTIEGAGG------------VEVFGVPLGAAAKLELA-K 349

Query: 368 IYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + A+L   G  V     D G + G+    AD  G    ++ G + +    V +K   TG 
Sbjct: 350 LAAKLRAGGARVDLAYGDRGLK-GAM-KAADRSGAKYALVAGDRDIEAGTVGLKDLSTGD 407

Query: 426 REDMSLEEVINYASHRF 442
           + D+  + V+     R 
Sbjct: 408 QIDVPADSVVAEVLSRL 424


>gi|253795645|ref|YP_003038741.1| putative prolyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
 gi|253739953|gb|ACT34288.1| putative prolyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
          Length = 371

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 133/319 (41%), Gaps = 51/319 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +H  SKG+++ LP    AL+ + + +R E N  G  E+ +P    A  +    R  + G 
Sbjct: 17  VHALSKGVHTLLPQAVHALNKLTSAVRREMNALGFCEVLMPCAVRASAFDR--RLRAMGD 74

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                A  N   M+  PT E+V+  +           P   YQ+QLKFR E RP  G++R
Sbjct: 75  A-FIKASNN---MVLAPTAEDVVVAMPS------ACAPAKLYQVQLKFRLEPRPSHGLVR 124

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           S EF+MKD Y+   T  G+ +    +  SY+R+    G++  P  A +  IGG  S E +
Sbjct: 125 SYEFVMKDGYAVSATRRGALNELKAVMGSYVRVLRGAGIEVAPCVASARDIGGSHSLELV 184

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                G  +V  +K    + +P+ +       S  +    ++  Y     V     F   
Sbjct: 185 A---VGLGRVAGAK----YYVPARSLA---SASWRARWLSFSKEYVDDQKVVLGSHF--- 231

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                +S  G+E+ H F F                 K   V M S+G+G  RVV   +  
Sbjct: 232 -----LSCEGVEIAHAFAF--------------RKLKRKKVWMASFGLGLSRVVGCAL-- 270

Query: 332 SHDGKGIIWPDSVAPFKIS 350
              G G +   ++AP  + 
Sbjct: 271 --AGNGEL---TLAPAAVV 284


>gi|222445472|ref|ZP_03607987.1| hypothetical protein METSMIALI_01111 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435037|gb|EEE42202.1| hypothetical protein METSMIALI_01111 [Methanobrevibacter smithii
           DSM 2375]
          Length = 431

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 140/436 (32%), Gaps = 44/436 (10%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
            +G   +L    +      +I+R         E+  P  +   L+  +SG  +    ++ 
Sbjct: 6   PRGTRDFLFDEMRERKKAESILRNVFENYAYQEIKTPLFEELKLFTTKSG--EEIVDQLY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D++D+ +   P     +  ++ + ++   + P   Y     FR E RP+ G  R R+
Sbjct: 64  NFKDKSDRELTLRPEITAPVARLYLNELQKTASKPIKLYYYGSCFRYE-RPQKG--RFRQ 120

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSH----- 208
           F               +     M         +LG+    +     G I G   H     
Sbjct: 121 FWQFGCELIGAKSPQGEAEVIAMC---SESIEKLGIPGADVNINHLGIIRGLFKHFNIDT 177

Query: 209 ----EFIVLADTGETQVFCSKDFMDFPI------PSENTDFDDIISLNSIVEQWTAPYAA 258
               E +V+ D G+  +       + PI              D++   SI++      A 
Sbjct: 178 ATQREVMVVIDKGDKDLLKESLTGENPIIDNEELNHVLFKLIDMVGDKSIIKDIEELVAP 237

Query: 259 TSDVHNE--------KLFDSLPENKRVSARGIEVGHIFYFGTKY-----SLPMSATFKGA 305
             + H+             S          G+  G  +Y G  +     SL       G 
Sbjct: 238 YPESHDALNELEELIDTLASFKMENYTLNLGVARGLDYYTGIVFEVYIPSLGAQKQVCGG 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV-APFKISLINIKAHDQVCRDA 364
                    G   + +           +  + +  P+ +  P  I +  I       R  
Sbjct: 298 GTYSLIKIFGGEEVVSTGFAFGFDRLMNAIEELATPEELPCPIDIYVAPISDD---VRLK 354

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQF-AVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +I   L         D  G++   +    A+ +      I+G+K + ++++ IK+  +
Sbjct: 355 AYEITQTLRSAEIACDVDLNGKKF-KKIMNHANKIKVKQVAIIGAKDLENNQITIKNMES 413

Query: 424 GIREDMSLEEVINYAS 439
           G +E + L+ V+ Y  
Sbjct: 414 GNQELVDLDNVVEYIK 429


>gi|224534381|ref|ZP_03674959.1| glycine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514483|gb|EEF84799.1| glycine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 445

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 146/478 (30%), Gaps = 101/478 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +  +N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKENIKREWWKSVVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+       R     +    +                  +F++H
Sbjct: 70  PEIWKASGHIDGFSDSMVDCKNCKSRFRADFVDLAKNCPNCRVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEGSSSEIYLRPETAQGIFVNFKNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P+     +     + +  F    ++++ +R             F  
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFF----IETLKIRPNK--------LRFKA 236

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T       S   +++  P                      +     +HN   +D   
Sbjct: 237 HDSTQLAHYAKSAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLTQ 276

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            +K  +   I   H      +Y        + + G    V M      +        E  
Sbjct: 277 HSKFSNNPKIFEYHDLLTKERYVP---YVIETSAGLTRSVLMTLCDAYSE-------EEL 326

Query: 333 HDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  IG
Sbjct: 327 SDGDRRIVLRLHPKLAPYKIAIFPLVKKVELV-EVARRIYVELCD-DFHIFYDDSG-TIG 383

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++   D +G P  V V    + D  V ++ R    ++ + + ++  Y      N + 
Sbjct: 384 KRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKRIFINDLYAYIKTEILNYKE 441


>gi|315231483|ref|YP_004071919.1| histidyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184511|gb|ADT84696.1| histidyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 437

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 149/446 (33%), Gaps = 59/446 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG    LP        V   IRE     G  E+  PT +   L+   SG  +   K++  
Sbjct: 10  KGTRDLLPEDMAKRRWVFERIREVFEVYGFKEILTPTFEYTKLFQLRSG--EEVVKQLYA 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  +F +  ++    P  +Y I   FR E  P+ G  R REF
Sbjct: 68  FKDKGGRDISLRPDLTSSVARLFVNKFQN-VPKPVKWYYITNMFRYEE-PQSG--RLREF 123

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                        E        M  SYL      GLK   +      +  + +    V  
Sbjct: 124 WQAGVELIGSANIEADAEVIALMIESYLST----GLKDFTVNIGDRVLLDEFAKMLGVED 179

Query: 215 DTGETQVFCSKDFM---DFPIPSENTDFDDIISLNSI----------------VEQWTAP 255
           D G  ++   KD M   DF    ++    D      +                 E + + 
Sbjct: 180 DIGLMRLIDKKDKMSREDFIAALKDFGLSDEAVEKVLFLIELKGKPDEILPKAYELFKSD 239

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA---------- 305
            A       E+LF+ L          I+ G    F    S+   A               
Sbjct: 240 KAKEELKKIEELFELLKAYGVYDYALIDFGIARGFDYYTSIVFEAIAPNDLGIGSIGGGG 299

Query: 306 ---------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                     GK        + IG  R++  +     + KG++    ++P  + ++ I  
Sbjct: 300 RYDNLIEVFGGKPTPA--TGFAIGIERLIPIL-----ESKGLLPSFRLSP-DVFVVYIGK 351

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +    +I   L K G    +D  G ++      AD L  P+ VI+G + +++ K 
Sbjct: 352 ELE-VKAKAIEITQALRKAGIKAEYDLQGRKLRKALEYADKLEIPVVVILGKRDLAEGKA 410

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            I+   TG ++ +++E++        
Sbjct: 411 TIRDMATGEQKSVAIEKIAKEVKEML 436


>gi|171185885|ref|YP_001794804.1| glycyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|170935097|gb|ACB40358.1| glycyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 583

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 80/539 (14%), Positives = 163/539 (30%), Gaps = 139/539 (25%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESGRYDSY----- 89
           G Y + PLG +   N+    R            E+  P +    ++  SG  D +     
Sbjct: 29  GFYDYGPLGVQIRRNIVEKWRRVFVLPYQETIVEVETPVVMPEPVFKASGHLDHFTDYIV 88

Query: 90  ---------------GKEM----LRLADRN----------DKAMIYGPTHE------EVM 114
                           +E+    ++++              +  I  P         E  
Sbjct: 89  ACTKCGRKYRADHLVEEELAKKGVKISTEGLSAADLQRLIGEYKIVCPACGGPLGGVETF 148

Query: 115 TDIFRSHIKSY---------------------------RNLPFTFYQIQLKFRDELRPRF 147
             +F++ I  Y                           R  PF   QI    R+E+ PR 
Sbjct: 149 NLLFKTTIGPYSESAGYLRPETAQGIFVAFPRLAEYVGRRHPFGVAQIGRVARNEISPRG 208

Query: 148 GVMRSREFLMKDAYSFDLTP------------------------------------EGSK 171
           G++R REF   +   F                                        +  +
Sbjct: 209 GLIRLREFTQMEIELFFDPQNPSCPYLPEVENTEVPIVPEEYVAKGKTDPLYLTAKQIVE 268

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             Y   ++++        L+ + +  E     G L HE    +     Q+  ++ F    
Sbjct: 269 RGYANEWMAFFMALATRFLRELGVPVERQKFLGKLPHERAHYSAKSYDQMVLTERFGWVE 328

Query: 232 IPSENTDF-DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR-GIEVGHI-- 287
           +         D+   +    +              ++    P    +  R G ++G +  
Sbjct: 329 VSGHAYRTDYDLSGHSRYSGREMYLERRLPVPKEVEVARLYPNPAAIRERYGDKIGEVIK 388

Query: 288 ------------FYFGTK------YSLPMSATF-----KGADGKDHYVQMGSYGIGAMRV 324
                       F  G +      + +     +     +  D +     +     G  R+
Sbjct: 389 AIKEHEGALLEAFKAGKEEAVAGPFVVTRDMVYIKTERRKTDLEKFIPHVVEPSFGLDRI 448

Query: 325 VAAVIESSHDG----KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
              V+E +       + +  P  VAP    ++ I    +   +  +++  RL++ G  V 
Sbjct: 449 FYVVLEHAVTEEDGRRYLRLPPDVAPVAACILPIVKKSEYV-EIGKRLARRLAQEGFYVL 507

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++D    IGS++A+ D +G PL V +  K  ++  V ++ R T  +  +  E+V  + +
Sbjct: 508 YED-DGTIGSRYALCDEIGTPLAVTIDEKTPAEGTVTVRDRDTRRQVRVKTEQVQAFVA 565


>gi|325686987|gb|EGD29011.1| serine--tRNA ligase [Streptococcus sanguinis SK72]
          Length = 425

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|312139505|ref|YP_004006841.1| histidine-tRNA ligase hiss [Rhodococcus equi 103S]
 gi|311888844|emb|CBH48156.1| histidine-tRNA ligase HisS [Rhodococcus equi 103S]
          Length = 426

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 134/436 (30%), Gaps = 43/436 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V   +       G   + +P  +   L+        D   
Sbjct: 9   FSAPKGVPDYVPPQSAEFVAVRDGLTRAARLAGYGHIELPIFEDTGLFARGVGESTDVVS 68

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 69  KEMYTFADRGDRSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLSYAGPFFRYE-RPQAG-- 125

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 126 RYRQLQQVGVEAIGVDDPALDAEVIAIADA---GFRSLGLDGFRLEITSLGDDTCRPQYR 182

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +   EF+   D  E     ++      +  +     ++ +   ++    +  A       
Sbjct: 183 ERLQEFLFGLDLDEDTRRRAEINPLRVLDDKRPHVREMTADAPLMLDHLSESAKAHFDEV 242

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     V+ R             E  H    G +  +     + G  A      
Sbjct: 243 LAHLDALGVPYVVNPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQP 301

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    YG+G  R + A+  E    G     P     F + L          +    KI  
Sbjct: 302 LSGIGYGLGVDRTILALAAEGKSAGN----PARCEVFGVPL------GAAAKTEMVKIAH 351

Query: 371 RLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            L   G  V   + D G + GS    AD  G  + +++G + ++   + +K    G +  
Sbjct: 352 ALRAAGIRVDMVYGDRGIK-GSM-KAADRSGARIALVLGDEDLAAGTIAVKDLSNGEQTS 409

Query: 429 MSLEEVINYASHRFSN 444
           +++E V+       ++
Sbjct: 410 VAMEGVVAQIGSILAD 425


>gi|184155308|ref|YP_001843648.1| histidyl-tRNA synthetase [Lactobacillus fermentum IFO 3956]
 gi|227514593|ref|ZP_03944642.1| histidine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|260662178|ref|ZP_05863074.1| histidyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|229558691|sp|B2GBY6|SYH_LACF3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|183226652|dbj|BAG27168.1| histidyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|227087004|gb|EEI22316.1| histidine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|260553561|gb|EEX26453.1| histidyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|299783163|gb|ADJ41161.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Lactobacillus fermentum CECT 5716]
          Length = 431

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 131/440 (29%), Gaps = 62/440 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R+     G  E+  P  +S D++  S     D 
Sbjct: 1   MRYQRPKGTADILPGDSQTWQYVEGQARQIFKTYGYQEIRTPLFESYDIFSRSAGDTSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F          N P+  Y I   FR E RP+
Sbjct: 61  VTKEMYDFKDKGDRHIALRPEGTAGVVRAFVENKLYGPEFNKPYKVYYIGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF      +F             M    LR F +LGL  + +   S       
Sbjct: 120 SG--RQREFHQIGVEAFGADNPAVDVEVITM---ALRFFKKLGLSDLRVAVNSLGDQESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS +     +    +V  SKD  D           D ++  + 
Sbjct: 175 ANYRQALIDYLKPHYDELSEDSKERLEKNPLRVLDSKDERDQQFVENAPSILDYLTPAAA 234

Query: 249 VEQWTAPYA--------ATSDVHNEKLFDSLPENKRVSARGIEVGH---IFYFGTKYS-L 296
                                     L         V  +   +GH       G +YS L
Sbjct: 235 ERFDQVKEMLDSLGIDYVVDATMVRGLDYYNHTIFEVMVKAKSLGHGYTTICGGGRYSGL 294

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE---SSHDGKGIIWPDSVAPFKISLIN 353
                     G         +GIG  R++  + +         G+          + ++ 
Sbjct: 295 VEELGGPDEPG-------VGFGIGLERLILLLGDEGVELPTEDGL---------DVYVVG 338

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +       ++       G     D +  +  +QF  A   G  + + VG + + +
Sbjct: 339 IG---EATNLESFRLVTAARDAGLVAERDYLNRKPKAQFKTAAKEGAKVTLTVGQREIEE 395

Query: 414 SKVEIKHRLTGIREDMSLEE 433
             V  K   TG    + L +
Sbjct: 396 GTVHFKVMATGKEVSVPLAD 415


>gi|47202575|emb|CAF87891.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 366

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 69/229 (30%), Gaps = 35/229 (15%)

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           M   +   ++S+R+LP    Q     R E +     +R+REFL ++ ++   T E +   
Sbjct: 1   MYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATKEEAAEE 60

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPI 232
             ++   Y R++    L +IP+       G     E     D   T + F S       +
Sbjct: 61  VLQILDLYARVYEE--LMAIPVVK-----GRKTEKEKFAGGDYTTTVEAFISASGRAIQV 113

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P                                                 +     + G 
Sbjct: 114 PGAPPSGAPEGLWWGAAVIEAPALCP------------------------QGATSHHLGQ 149

Query: 293 KYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
            +S      F+     G+       S+GI   R +  +     D KG++
Sbjct: 150 NFSKMFEIVFEDPKKPGEKQLAFQNSWGIT-TRTIGVLTMVHGDNKGLV 197


>gi|121535603|ref|ZP_01667410.1| histidyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305843|gb|EAX46778.1| histidyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 421

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 69/438 (15%), Positives = 137/438 (31%), Gaps = 47/438 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP        +    R+        E+  P  +  +L++       D 
Sbjct: 1   MLTTGPRGTKDILPDTSGYWQYIEQAARDLCRLYAYQEIRTPIFEHTELFLRGIGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR  +++   P +   +   +  H       P   + I   FR + RP+ G
Sbjct: 61  VSKEMYTFTDRGGRSITLRPENTAAVVRSYLEHKLYTAPQPVKVFYIGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F      +              +    ++ F +LGL  + +   S       PI
Sbjct: 120 --RLRQFHQFGIEAIGAPGPAVDAE---IIALAVQFFEQLGLTGLELNINSVGCPRCRPI 174

Query: 203 GGDLSHEF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             +    F    L +         +      +  +N     +      +         + 
Sbjct: 175 YRERLQNFLRDKLFELCRDCQSRFERNPLRILDCKNETCGALSQGAPRIVDCLCDECTSH 234

Query: 261 DVHNEKLFDSLPENKR---VSARGIEVGHIFYFGTKYSL--PMSATFKG-------ADGK 308
            V  +++  +            RG++      F  +Y L    SA   G        +  
Sbjct: 235 FVKLQEMLAAAGIRYTLNPRLVRGLDYYTKTAFEIQYPLLGAQSAICGGGRYDGLIEECG 294

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                   + IG  RV+ A+       K  + P +     + +  I    +  +    ++
Sbjct: 295 GQPTPAIGFAIGLERVLLAL------EKQALLPMTAGGIDVFIAPIG---ERAQAVAFEL 345

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLL---GFPLQV--IVGSKFVSDSKVEIKHRLT 423
             RL + G     D M    G +   A +     +P +   I+G   V+  +V +K+  +
Sbjct: 346 LCRLRRAGITCDMDFM--SRGIK---AQMKHANKYPARFAAIIGDDEVARGQVTLKNMES 400

Query: 424 GIREDMSLEEVINYASHR 441
           G +E ++  +V       
Sbjct: 401 GEQEAVAFGDVEQKLRAE 418


>gi|322370889|ref|ZP_08045444.1| histidyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320549566|gb|EFW91225.1| histidyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 432

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 140/440 (31%), Gaps = 49/440 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG Y   P    A   +   + E     G  E+  P+++  DL+  +SG  D   ++   
Sbjct: 8   KGFYDRYPEEWAAWREIVDTVEETAREFGFREIDAPSVEPTDLFRVKSG--DEIVEQTYS 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P      + + +      ++L  P  ++    ++R E   +    R R
Sbjct: 66  FEDKGGREVTLIPEQTPTRSRLVQQR----KDLGTPIKWFDTSKRWRYEAVQK---GRDR 118

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-KSIPMRAESG--------PIGG 204
           EF   D   F +    +         +   I+ +LG+  ++  R             +  
Sbjct: 119 EFFQTDIDIFGVESVEADAEIIACAAT---IYEKLGVADAVEFRLNDRQLLDALLKAMDV 175

Query: 205 DLSHEFIVLADTGETQVFCSKDFM------DFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           + S + + + D  E                D     E  +   I           +  A 
Sbjct: 176 EGSKDVMRVIDKKEKLSREEFLDNLELEGVDRATAEEIDELTAISGEMESALVELSDKAP 235

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYF----GTKY--SLPMSATFKGAD------ 306
             D  ++ +         +SA  +E    F      G  Y   L   A     D      
Sbjct: 236 EGDAADDAIERMHDLYDVLSAYDVEDMCTFDLSIVRGMDYYTGLVFEAFSTEGDLRALFG 295

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII----WPDSVAPFKISLINIKAHDQVCR 362
           G  +   +  +G   +  +      S     +     WPD        ++ I       R
Sbjct: 296 GGRYDHLIEQFGSREVPAIGFAFGYSTTMHLLKKLGEWPDEALSTDAYVLTI---SDSVR 352

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +    L   G  V  D  G  +G QF  AD +     V+VG + +++  V +++  
Sbjct: 353 EIGLEYAKGLRSAGLTVETDLTGRSVGEQFGYADRINAEYTVVVGERDLNEGVVTVQNMD 412

Query: 423 TGIREDMSLEEVINYASHRF 442
           +G  E +   EV+     R 
Sbjct: 413 SGEEEQVPKNEVVENVLDRL 432


>gi|295704483|ref|YP_003597558.1| threonyl-tRNA synthetase 2 (Threonine--tRNA ligase)(ThrRS)
           [Bacillus megaterium DSM 319]
 gi|294802142|gb|ADF39208.1| threonyl-tRNA synthetase 2 (Threonine--tRNA ligase)(ThrRS)
           [Bacillus megaterium DSM 319]
          Length = 113

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++++G+  +W   +AP +  L+ I A      +   K+   L   G  V  DD  E+IG
Sbjct: 1   MNNYEGQFPLW---LAPVQFKLLPIAA---PHVEYAYKVKHELESQGYRVEVDDRIEKIG 54

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +   A++L  P   ++G + V +  + ++         +S++E   Y +   ++NR
Sbjct: 55  LKIREAEMLKVPYMAVIGDREVENESLAMRKHGKENIGTVSVKEAAVYLNKEMNSNR 111


>gi|125718717|ref|YP_001035850.1| seryl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166223300|sp|A3CQ45|SYS_STRSV RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|125498634|gb|ABN45300.1| Seryl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 425

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|13542219|ref|NP_111907.1| glycyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|14325653|dbj|BAB60556.1| tRNA synthetase Gly [Thermoplasma volcanium GSS1]
          Length = 476

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 166/480 (34%), Gaps = 107/480 (22%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG- 90
           I+  S G Y + PLG    DN+ +I ++   + GAI +  P +  AD++  SG  + +  
Sbjct: 22  IYGGSSGFYDYGPLGTLLKDNIISIWKKSYAKEGAIFLDTPVIAPADVFKASGHLEKFSD 81

Query: 91  --------------KEMLRLADRN-------------DKAMIYGP--------------- 108
                         + +L+    +             ++  +  P               
Sbjct: 82  IAVKCEKCKTAYKLENLLKSVGIDVPLNNVEKANAVLEEYDVKCPKCGAPLRGAYEFNLM 141

Query: 109 ----THE-----EVMTDIFRSHIKSYRN----LPFTFYQIQLKFRDELRPRFGVMRSREF 155
               T+E     E    IF +    Y      +P    Q+   FR+E+ PR  ++R REF
Sbjct: 142 FKVGTNELYLRPETAQGIFINFKNLYNYSRNTMPIIVCQVGKGFRNEISPRQALIRMREF 201

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F                 YL               +S       S +F +L +
Sbjct: 202 TQAEVEVF-----------------YLN--------------DSDFNPNGNSLKFKLLRN 230

Query: 216 TGE------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           TGE       +   S    +  +         I+S                        +
Sbjct: 231 TGEEVTVDLKEALHSGIVKNPVMAYFLEKTYSILSSIGFNPNHLRAREHDPLERAHYSSE 290

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKDHYVQMGSYGIGAMRVV 325
           +      +    IE+  +   GT Y L     F G     DG    V   SYGI   R+V
Sbjct: 291 TWDFEYLMDGEWIEIVGVSDRGT-YDLGRHQQFSGENMEVDGNIPRVVEPSYGID--RIV 347

Query: 326 AAVIESSHD--GKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             ++   +     G   +    +V+P   ++  ++  D       ++++ ++ ++   V+
Sbjct: 348 LTILNDGYYIRDNGYKVLKLDPAVSPLHFAVFPLQRRD-GLDAKAKELFNKIKQIDPFVY 406

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+ G  IG ++A  D +G P  + V  + + DS V I+ R +  +   ++EE++   S 
Sbjct: 407 YDEGGN-IGRRYARQDEIGTPFCITVDYETLEDSTVTIRERDSTKQVRENIEELLQKISD 465


>gi|153005174|ref|YP_001379499.1| histidyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152028747|gb|ABS26515.1| histidyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 415

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 148/425 (34%), Gaps = 40/425 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP        + A+ RE     G  E+  P ++ A L+    G   D   KEM 
Sbjct: 9   KGMNDLLPGQASRWQEMEAVAREVFALYGYREVRTPVVEPAQLFARGVGEATDIVKKEMY 68

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ ++ +   P         F  H   +   P  ++ +   FR E RP+ G  R R+
Sbjct: 69  VFEDKGEELLALRPEGTAGTVRAFIEHGA-FVEGPQKWFYVGPMFRRE-RPQKG--RYRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLR---IFHRLGLKSIPMRAESGPIGGDL----- 206
           F      +F +           +   YL    +   L L S+  RA       DL     
Sbjct: 125 FHQIGCEAFGIAEPYLDAEQIALLDDYLARLGVRAELKLNSVGDRACRPAYLQDLRDFLA 184

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +  + AD  E         +D  + S       +++    + +   P  A+     + 
Sbjct: 185 SRKGELCADCNERMERNPLRVLDCKVESC----QPVLAQAPRLLERLCPECASHFDAVKG 240

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYGIGAM- 322
             D+L     V  R +  G  +Y  T Y   S  + +    A G  +   + + G     
Sbjct: 241 GLDALGVRYTVDTRLV-RGLDYYVRTAYEFTSDALGSQSAVAGGGRYDGLVETLGGPPTP 299

Query: 323 --------RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                     +A ++E +        P         +  + A  +  R+A  +  A L +
Sbjct: 300 GIGFALGQERLAMILEKAGRAAPERRP--------VVFFVSADAEGAREALRR-AAELRR 350

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G     D  G ++ +QF  A+ +G    +++G   V   + ++K   T     ++L ++
Sbjct: 351 AGIACELDARGGKLKAQFKQAERVGARYALVLGGNEVQTGQAKLKDLQTREETPIALADL 410

Query: 435 INYAS 439
           +    
Sbjct: 411 VARVR 415


>gi|95931408|ref|ZP_01314117.1| histidyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95132545|gb|EAT14235.1| histidyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 424

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 134/432 (31%), Gaps = 44/432 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG+   LP        +    R      G  E+ VP ++  +L+  S     D   KEM 
Sbjct: 7   KGMNDILPSEIATWQFLEDTARRIFATYGCQEIRVPVVEKTELFCRSIGETTDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D++D ++   P     +   F  H    ++     Y +   FR E RP+ G  R R+
Sbjct: 67  TFNDKSDNSLTLRPEGTAPVMRSFIQHKLFNQDQVSKLYYLGPMFRYE-RPQKG--RYRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F    A    +           M   Y   F  +GL  + ++  S       P       
Sbjct: 124 FHQIGAEIIGIDDPRMDAQVLAMLSHY---FEAVGLTDVSLQINSLGCPKCRPDYRQTLI 180

Query: 209 EF------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           +F       +  D            +D    S      D  S+              +  
Sbjct: 181 DFLQQRLDQLCPDCQRRYATNPLRVLDCKSKSCKEATQDAPSV-LDHLCDECDTHFATVQ 239

Query: 263 HNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG---ADGKDHYV 312
                  +         RG++              G + ++     + G     G     
Sbjct: 240 QCLNQLGTAYSINNRMVRGLDYYTKTTFEMVTNNLGAQNAVAAGGRYDGLVEELGGPSLP 299

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +G + +G  R+V  +       K I  P   A F  +L      D    +   K+  +L
Sbjct: 300 GIG-FAMGVERLVLLL-----QDKKIKTPPP-ALFLATL----GKD--AEEFAFKVLHQL 346

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G     D  G  + +Q   AD L     +++G   +S+   ++K    G ++ + L 
Sbjct: 347 QREGIYAEMDFTGRSLKAQLRRADKLNCRYTIMIGDNELSEGSAQLKRMADGDQQAVQLS 406

Query: 433 EVINYASHRFSN 444
           +++        +
Sbjct: 407 QLLEQLRPLLDD 418


>gi|325283748|ref|YP_004256289.1| glycyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324315557|gb|ADY26672.1| glycyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 506

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 120/390 (30%), Gaps = 71/390 (18%)

Query: 84  GRYDSYGK-EMLRLADR-----NDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQ 136
           G +       M+           D      P   + +   F++ + S  R LPF   QI 
Sbjct: 158 GEWTEPRPFNMMFKTSIGPVADEDSFGYLRPETAQGIFVNFKNVVDSTSRRLPFGIAQIG 217

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ PR  V R RE    +   F                                 
Sbjct: 218 KAFRNEITPRNFVFRVREMEQMEIEFFCTP------------------------------ 247

Query: 197 AESGPIGGDLSHEFIVLAD---TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                 G D       L       E Q    +  +   +P ++       + + + +  T
Sbjct: 248 ------GTDEEWHAHWLEKRLTWWEEQGVPREKIIVEDVPKDDLAHYSKRTYDLMYDFPT 301

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYV 312
             +     + N   FD     K       E+G               T    +  K    
Sbjct: 302 LGHDEIEGIANRTDFDLGSHTKGQE----ELGLTAQVMENSDSVAKLTIPHPETNKPVVP 357

Query: 313 QMGSYGIGAMRVVAAVIESSH------DGKG---IIWPDSVAPFKISLINIKAHDQVCRD 363
            +     G  R + AV+  ++      +G     +     +AP K+++I +  +     D
Sbjct: 358 FVIEPSAGVDRALLAVLSEAYCKETLENGNERTVLKLKPHLAPIKVAVIPLARNKPELVD 417

Query: 364 ACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-------GSK-FVS-D 413
              +I A L K+G   +  +D G  IG  +   D +G P  V V       G     +  
Sbjct: 418 LARRIKADLQKLGLGRILLEDSGN-IGKAYRRHDEVGTPYCVTVDFDTAGLGENVDAALK 476

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V +++R T  +E +++ ++  +   +  
Sbjct: 477 GTVTVRNRDTLEQERVAIADLAAWLQAKLR 506


>gi|157151414|ref|YP_001450960.1| seryl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083593|sp|A8AYV0|SYS_STRGC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157076208|gb|ABV10891.1| seryl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 425

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|332638292|ref|ZP_08417155.1| histidine--tRNA ligase [Weissella cibaria KACC 11862]
          Length = 436

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 142/448 (31%), Gaps = 58/448 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG    LP        V    R         E+  P  +S D++  S     D   
Sbjct: 6   FQKPKGTADLLPGESLKWHYVEETARVLFGDYQYSEVRTPIFESFDVFARSAGDTSDVVT 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFG 148
           KEM    D+ D+ +   P     +   F  +         P+  + I   FR E RP+ G
Sbjct: 66  KEMYDFHDKGDRHVALRPEGTAGVVRAFVENKLFGPEHQKPYKMFYIGPMFRYE-RPQAG 124

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      +              M V +   F  LG+ ++ ++  S  +G   S 
Sbjct: 125 --RMRQFHQIGVEALGSDSPALDAEVIAMAVDF---FQTLGVTNLKVKINS--LGDKASR 177

Query: 209 EFIVLA--------------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           E    A                    +    +V  SKD  D  I ++     D ++ ++ 
Sbjct: 178 ENYRQALINFLTPHFDELSADSQTRLEKNPLRVLDSKDAKDQAIVADAPSILDYLTESAQ 237

Query: 249 VEQWTAPYAATSDVHN-------EKLFDSLPENKRVSARGIE-VGHIFYF---GTKYSLP 297
                      +   +        +  D             E +GH +     G +Y+  
Sbjct: 238 AHWDKVQTYLEAMGIDYEVDANVVRGLDYYNHTIFEVMTQSEALGHGWTTITGGGRYN-- 295

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    G      +G +GIG  R++  +     + +G   P+  AP  + + N    
Sbjct: 296 ---GLVEEFGGPEMPGVG-FGIGLERLMLLL-----ESEGATLPEQ-APLDVYVANTGDG 345

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             V      ++   +   G     D    ++  QF  AD LG    + +G + +++    
Sbjct: 346 TDVV---AMQMVQAVRSFGYSAERDYQDRKLKGQFKSADRLGARFMITIGERELAEQSAN 402

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           +K+  TG    + L E+         + 
Sbjct: 403 LKNMTTGKEITVKLAELYTGLPEFIEDE 430


>gi|290994751|ref|XP_002679995.1| predicted protein [Naegleria gruberi]
 gi|284093614|gb|EFC47251.1| predicted protein [Naegleria gruberi]
          Length = 528

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 140/404 (34%), Gaps = 45/404 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           P  +  +D +     + +     + +++ P  + A+ W +   +D   K M    ++ + 
Sbjct: 165 PETKPTIDKMETAKEKIEWMNQNSSQVTCPCEKKANSWDKIRNFDMLFKTMYGPIEKEEN 224

Query: 103 AMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
                P   + +   F + I  S + LP    QI   FR+E+ PR  + R REF   +  
Sbjct: 225 TAYLRPETAQGIFINFNNVITTSRKRLPLGVGQIGKAFRNEISPRDFIFRQREFEQMELE 284

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F    + S       +  Y   F    L    ++ ++  I            +T + + 
Sbjct: 285 YFCHPTQSSD------YFKYWVNFCHEWLLKYGLKKDNVRIYTKTQDLAHYSKETSDIEY 338

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                + +    +  TD+ D+ +     ++    +       NEK    + E    + R 
Sbjct: 339 LFPFGWSEIWGIANRTDY-DLQAHVQPSKKDKHTFEYVDPQTNEKYVPHVVEPSAGADRV 397

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +                +  +   + ++   +     +                      
Sbjct: 398 L---------------FAFLYDAYNVEEVPGEEKRVVLKI-------------------H 423

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP+K ++  ++          E+IY++L+ V     +D     IG  +   D +G P
Sbjct: 424 PDLAPYKFAVFPLQKKPVELMSKAEEIYSQLASV-VSTDYDVSS-SIGVLYRRHDEIGTP 481

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +  + + D+ V ++ R T  +  M++ +++    H   NN
Sbjct: 482 YCITIDHQTLKDNTVTVRDRDTMKQIRMNINDIVTNPLHLLKNN 525


>gi|328944998|gb|EGG39155.1| serine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 425

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|315612585|ref|ZP_07887498.1| serine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315315566|gb|EFU63605.1| serine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 424

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G Y  +  +   L   N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGNYPKFKDDTFELKATN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|262202241|ref|YP_003273449.1| histidyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085588|gb|ACY21556.1| histidyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 421

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 68/434 (15%), Positives = 137/434 (31%), Gaps = 42/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  +GI  + P        V   + +   R G   + +P  +   L+        D   
Sbjct: 5   FQAPRGIPDYYPPASADFRRVRDTLTDAARRAGYGHIELPVFEDTALFARGVGESTDVVS 64

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E +P+ G  
Sbjct: 65  KEMYTFADRGDRSVTLRPEGTAGVMRAVIQHGLDRGQLPVKLSYAGPFFRYE-KPQTG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGG 204
           R R+       +  +           +       + RLGL    +        ES P   
Sbjct: 122 RYRQLQQVGVEAIGVDDPALDAEVIAVAD---EGYRRLGLSGFRLEITSLGDDESRPRYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +   +F+   D  E     ++      +  +  +     +   ++  + +  A       
Sbjct: 179 EALQQFLFGLDLDEPTRQRAQLNPLRVLDDKRPEIKAATADAPLLIDYLSDDARAHFELV 238

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG---ADGKDH 310
               D L     +++R             E  H    G +  +     + G     G   
Sbjct: 239 LAHLDRLGVPYELNSRLVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRQLGGKQ 297

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +    +G+G  R + A+      G         A  ++  + +       +     +  
Sbjct: 298 DLSGIGFGLGVDRTMLALEAEGVAG------TEAARCQVFGVPLGT---AAKAELVGVAG 348

Query: 371 RLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +L   G  V     D G + G+    AD  G  + +++G + +    VE+K+   G+++ 
Sbjct: 349 QLRAAGISVDLAYGDRGLK-GAM-KAADRSGAKIALVLGDREIEQRVVEVKNLTDGVQQQ 406

Query: 429 MSLEEVINYASHRF 442
           + +++V+       
Sbjct: 407 VCIDDVVGQVQRLL 420


>gi|270283990|ref|ZP_05965365.2| glycine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277876|gb|EFA23730.1| glycine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 544

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 156/475 (32%), Gaps = 66/475 (13%)

Query: 19  EIASHKLMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMS 70
           E+ S  L  R G +       G     + + PLG    DN+           R   + + 
Sbjct: 61  EVVS--LAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRSMVVTRADVVGVD 118

Query: 71  VPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
              +  + +WV SG    +     E L    RN +  +     E+    +  + +K    
Sbjct: 119 TSIILPSAVWVASGHVSVFNDPLVECLTCHKRNREDKLVESYAEKHGDQLPENGLKD--- 175

Query: 128 LPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIF 185
                     +    E R    ++R+    ++D  S   L PE ++     +FV +  + 
Sbjct: 176 --IVCPNCGTRGNWTEPRDFNMMLRTNLGPVEDENSLHYLRPETAQ----GIFVDFKNVM 229

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +K     A +   G    +E         T+ F   +   F  P ++ D+      
Sbjct: 230 TSSRMKPPFGIANT---GKSFRNEITPGNFIFRTREFEQMEMEFFVAPGQDEDWHQYWID 286

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------T 292
                       A +  H E   + L    +   R +++ + F F              T
Sbjct: 287 ARTQWYLDLGIKAENLRHYEHPKEKLAHYSK---RTVDIEYKFGFQGSDWGELEGVANRT 343

Query: 293 KYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------- 337
            + L   A   G D        G+     +     G  R + A +  + D          
Sbjct: 344 DFDLSAHAEHSGEDLAYFNQATGEKFIPYVIEPAAGLSRSLMAFLVDAFDVDEAPNTKGG 403

Query: 338 ------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                 +     +AP+K +++ +    ++       + A L      V +D+ G  IG +
Sbjct: 404 VDKRTVLRLDPRLAPYKAAVLPLSKKPELQS-VAHNLAADLRLNDWMVDYDESGA-IGRR 461

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   D +G PL + V    + D  V I+ R T  +E ++L+ V  Y   R  + R
Sbjct: 462 YRRQDEIGTPLCITVDFDTLEDQAVTIRERDTMQQERVALDNVAAYVRARIEDKR 516


>gi|324992052|gb|EGC23974.1| serine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|325697635|gb|EGD39520.1| serine--tRNA ligase [Streptococcus sanguinis SK160]
 gi|327459354|gb|EGF05700.1| serine--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327490570|gb|EGF22351.1| serine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 425

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|322387197|ref|ZP_08060807.1| serine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321141726|gb|EFX37221.1| serine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 424

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G Y  +  +   ++D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGNYPKFKDDTFEISDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|324994145|gb|EGC26059.1| serine--tRNA ligase [Streptococcus sanguinis SK678]
          Length = 425

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|219117560|ref|XP_002179573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408626|gb|EEC48559.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 602

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 121/349 (34%), Gaps = 39/349 (11%)

Query: 105 IYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++    S + +PF   QI   FR+E+ PR  + RSREF   +   F
Sbjct: 279 YLRPETAQGIFLNFKNVLTTSRQKIPFGIAQIGKAFRNEITPRNFIFRSREFEQMEVEYF 338

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
               +    ++++ ++            S       G     L  +             C
Sbjct: 339 IPPGDEVWPAFHQQWID----------DSRAFLLSIGLQEELLGWDVHEGDKLAHYAQAC 388

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +     FP   +            + +         S V   + F +   +  +    + 
Sbjct: 389 TDITFRFPFGEQELMGIAARGNYDLSQHSEGSGKTCSGVGTLEAFRAFLNSYAICFNSV- 447

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG----- 337
                             +     K+ Y        +G  R++ A+I S++         
Sbjct: 448 ---------------GLEYYDEQTKEKYIPHCIEPSLGVDRLMLALICSAYAEDEVGGEK 492

Query: 338 ---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              + +   +AP K++++ +  + +        ++ +L +   +  +D  G  IG ++  
Sbjct: 493 RSLLKFDPKIAPIKVAVLPLLKNKEELVSVARDLFDKLRR-RWNCQYDAAGA-IGRRYRR 550

Query: 395 ADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           AD +G P  V +    +  D+ V I+ R T  +  + L++VI+Y S R 
Sbjct: 551 ADEVGTPYCVTIDFDTIETDNAVTIRDRDTTDQVRIPLKDVISYLSERI 599



 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 17/120 (14%)

Query: 13  ENPRD---AEIASHK------LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAII 57
           E P D   AE  ++       L  R G+I   S       G Y + PLG +   NV    
Sbjct: 63  EAPSDVVVAEALTYSMEDVVGLCKRRGIIFPSSEIYNGYAGFYDYGPLGSELKKNVKDAW 122

Query: 58  REE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
            +     R   + +    + + + W  SG  D +   M+   +   +       +  VM 
Sbjct: 123 WKNFVMMREDVVGVDSSIIHNPETWKSSGHVDGFSDPMVDCKETKLRYRADQLFYAPVMV 182


>gi|116618408|ref|YP_818779.1| histidyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097255|gb|ABJ62406.1| histidyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 433

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 143/437 (32%), Gaps = 57/437 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I Q  KG    LP       +V A+ R         E+  P  ++ +++  S     D  
Sbjct: 5   IFQRPKGTADLLPQKTVQWQHVEAVARVLFGDYNFKEIRTPLFENFEVFSRSAGDTSDVV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            KEM    D+ D+ +   P     +   +          + P+  + +   FR E RP+ 
Sbjct: 65  TKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEFDKPYKAFYMGPMFRYE-RPQA 123

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------- 199
           G  R R+F    A  F             M + +   F  LGLK++ +   +        
Sbjct: 124 G--RFRQFHQIGAEVFGSDSPALDAEVIAMVIDF---FQTLGLKNLKVAINTLGDKESRD 178

Query: 200 ----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                      P   +LS +     +    +V  SKD  D    ++     D +S  S  
Sbjct: 179 AYRQALIDYLKPHFDELSADSQARLEKNPLRVLDSKDPRDQVFVADAPSILDFLSEKSTK 238

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-FGTKYSLPMSATFKG-- 304
                              +   +      RG++     IF    T  SL  +AT  G  
Sbjct: 239 HWEK-------LQDILTALNLDFDIDTTMVRGLDYYNDTIFEIMTTDESLKGAATIAGGG 291

Query: 305 -------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    G      +G +GIG  R++  +   +      + P         ++NI   
Sbjct: 292 RYSGLVEEFGGPETPGVG-FGIGVERLLDLLQAQN------VAPTEEQNLDFYVVNIGDT 344

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             V      KI   +   G     D + +   +QF  AD       + +G + + +  V 
Sbjct: 345 TDVI---ATKIVQAVRSFGYVAERDYLSKSAKAQFKAADRHHAKYVITIGEQELEEQIVN 401

Query: 418 IKHRLTGIREDMSLEEV 434
           IK+   G ++ + L E+
Sbjct: 402 IKNMTNGEQKSVQLSEL 418


>gi|291533405|emb|CBL06518.1| histidyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 420

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 143/435 (32%), Gaps = 45/435 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        +  +IR+   + G  E+  P  +  +L+        D 
Sbjct: 1   MLTKAPRGTKDILPDKVGNWLYLENLIRKLCGQYGYREIRTPIFEHTELFQRGIGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRF 147
             KEM    DR ++++   P +       +    K Y +      + I   FR + RP+ 
Sbjct: 61  VEKEMYTFTDRGNRSITLRPENTAAAVRSY-LENKLYADTNLCKLFYIGSMFRYD-RPQA 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GP 201
           G  R REF      +              +    ++    LGLK I +   S       P
Sbjct: 119 G--RYREFHQFGVEALGEANPAVDAE---IISLAVQFLKDLGLKDIKLLLNSVGCPKCRP 173

Query: 202 IGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           +      EF   V+ +  +             +  +N    ++      +          
Sbjct: 174 VYRQRLQEFFKPVIDEMCDDCKSRYDRNPMRLLDCKNEKCKELAQDAPAITDCLCDECND 233

Query: 260 SDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTKYSLPMSAT------------FKG 304
                ++   +      +     RG++      F  KY  P+ A              + 
Sbjct: 234 HFHKVQEFLTAAGIEFELDPGLVRGLDYYTKTAFELKYV-PLGAQSAVLGGGRYDGLIEE 292

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        +  G  RV+ A+   +      + P++     + ++ +       +  
Sbjct: 293 CGGKSTPAV--GFATGLERVLLALEMQN------LLPETNYDTDVFIVALG---DTVQAK 341

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I A L + G     D  G  + +Q   A+       +I+G   +  + V +K+    
Sbjct: 342 AFEILANLRRGGFKAAMDFAGRSMKAQMKQANKANAKFTIILGEDELQANSVVLKNMNES 401

Query: 425 IREDMSLEEVINYAS 439
            +E +S++E++N  +
Sbjct: 402 TQETISIDELLNKLT 416


>gi|329116627|ref|ZP_08245344.1| serine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326907032|gb|EGE53946.1| serine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 425

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKNLGARLERAIYNFMLDEHGKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILEGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDIEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|315444723|ref|YP_004077602.1| histidyl-tRNA synthetase [Mycobacterium sp. Spyr1]
 gi|315263026|gb|ADT99767.1| histidyl-tRNA synthetase [Mycobacterium sp. Spyr1]
          Length = 420

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 136/433 (31%), Gaps = 41/433 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            +  KG+  + P        V + +     R G  ++ +P  +   L+        D   
Sbjct: 5   FKAPKGVPDYFPPDSAEFVAVRSGLLTAARRAGYGDIELPIFEDTALFARGVGESTDVVS 64

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR ++++   P     +      H      LP         FR E RP+ G  
Sbjct: 65  KEMYTFADRGERSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLCYSGPFFRYE-RPQAG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 122 RYRQLQQVGIEAIGVDDPALDAEVIAVADA---GFRSLGLDGFRLEITSLGDDSCRPQYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     ++      +  +     ++ +   ++    +  A       
Sbjct: 179 ELLQEFLFALDLDEETRRRAEINPLRVLDDKRPHVREMTANAPVMLDHLSDAAKEHFDTV 238

Query: 265 EKLFDS---LPENKRVSARGIEVGH--IFY-----FGTKYSLPMSATFKG--ADGKDHYV 312
               D+            RG++      F       G +  +     + G  A      +
Sbjct: 239 LAHLDALSVPYVINPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAQLGGRDL 298

Query: 313 QMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
               +G+G  R + A+  E    G         A   +  + + A  +V       +  +
Sbjct: 299 SGIGFGLGVDRTLLALRAEGRTAG-------ETARVDVYAVPLGADAKVRLAV---LATQ 348

Query: 372 LSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L   G  V     D   + G+    AD  G  + ++ G + +    V +K   TG + D+
Sbjct: 349 LRAAGVRVDVAYGDRSLK-GAM-KGADRSGASIALVAGDRDLEAGTVGVKSMATGEQVDV 406

Query: 430 SLEEVINYASHRF 442
           + ++V+     R 
Sbjct: 407 ASDDVVAEVLSRL 419


>gi|323350377|ref|ZP_08086041.1| serine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322123450|gb|EFX95126.1| serine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 425

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|15609717|ref|NP_217096.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15842119|ref|NP_337156.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31793764|ref|NP_856257.1| histidyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638465|ref|YP_978689.1| histidyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662419|ref|YP_001283942.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823775|ref|YP_001288529.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968808|ref|ZP_02551085.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404528|ref|ZP_03416709.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215412352|ref|ZP_03421112.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427980|ref|ZP_03425899.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215446829|ref|ZP_03433581.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|218754318|ref|ZP_03533114.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558584|ref|ZP_03537660.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|224990959|ref|YP_002645646.1| histidyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798339|ref|YP_003031340.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 1435]
 gi|254232699|ref|ZP_04926026.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis C]
 gi|254366781|ref|ZP_04982824.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551631|ref|ZP_05142078.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187593|ref|ZP_05765067.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|260201709|ref|ZP_05769200.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289444118|ref|ZP_06433862.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289448229|ref|ZP_06437973.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis CPHL_A]
 gi|289553630|ref|ZP_06442840.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 605]
 gi|289570751|ref|ZP_06450978.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T17]
 gi|289746372|ref|ZP_06505750.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289751203|ref|ZP_06510581.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T92]
 gi|289758710|ref|ZP_06518088.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T85]
 gi|289762751|ref|ZP_06522129.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis GM 1503]
 gi|294994310|ref|ZP_06800001.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297635190|ref|ZP_06952970.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732182|ref|ZP_06961300.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298526053|ref|ZP_07013462.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|306776854|ref|ZP_07415191.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu001]
 gi|306780618|ref|ZP_07418955.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu002]
 gi|306785381|ref|ZP_07423703.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu003]
 gi|306789981|ref|ZP_07428303.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu004]
 gi|306794062|ref|ZP_07432364.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu005]
 gi|306798460|ref|ZP_07436762.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu006]
 gi|306804339|ref|ZP_07441007.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu008]
 gi|306807622|ref|ZP_07444290.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu007]
 gi|306969823|ref|ZP_07482484.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu009]
 gi|306972968|ref|ZP_07485629.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu010]
 gi|307080679|ref|ZP_07489849.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu011]
 gi|307085266|ref|ZP_07494379.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu012]
 gi|313659516|ref|ZP_07816396.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|54039671|sp|P67484|SYH_MYCBO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|54042034|sp|P67483|SYH_MYCTU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228585|sp|A1KLS8|SYH_MYCBP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228586|sp|A5U5T0|SYH_MYCTA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782338|sp|C1AF49|SYH_MYCBT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1478232|emb|CAB01263.1| PROBABLE HISTIDYL-TRNA SYNTHETASE HISS (HISTIDINE--TRNA LIGASE)
           (HISRS) (HISTIDINE--TRANSLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882402|gb|AAK46970.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31619358|emb|CAD94796.1| PUTATIVE HISTIDYL-TRNA SYNTHETASE HISS (HISTIDINE--TRNA LIGASE)
           (HISRS) (HISTIDINE--TRANSLASE) [Mycobacterium bovis
           AF2122/97]
 gi|121494113|emb|CAL72591.1| Putative histidyl-tRNA synthetase hisS [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124601758|gb|EAY60768.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis C]
 gi|134152292|gb|EBA44337.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506571|gb|ABQ74380.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722302|gb|ABR06927.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis F11]
 gi|224774072|dbj|BAH26878.1| histidyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319842|gb|ACT24445.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 1435]
 gi|289417037|gb|EFD14277.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289421187|gb|EFD18388.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis CPHL_A]
 gi|289438262|gb|EFD20755.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 605]
 gi|289544505|gb|EFD48153.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T17]
 gi|289686900|gb|EFD54388.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289691790|gb|EFD59219.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T92]
 gi|289710257|gb|EFD74273.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis GM 1503]
 gi|289714274|gb|EFD78286.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T85]
 gi|298495847|gb|EFI31141.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214780|gb|EFO74179.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu001]
 gi|308326552|gb|EFP15403.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu002]
 gi|308329974|gb|EFP18825.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu003]
 gi|308333591|gb|EFP22442.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu004]
 gi|308337618|gb|EFP26469.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu005]
 gi|308341283|gb|EFP30134.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu006]
 gi|308345943|gb|EFP34794.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu007]
 gi|308349091|gb|EFP37942.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu008]
 gi|308352632|gb|EFP41483.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu009]
 gi|308357659|gb|EFP46510.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu010]
 gi|308361600|gb|EFP50451.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu011]
 gi|308365219|gb|EFP54070.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu012]
 gi|323718853|gb|EGB28009.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis CDC1551A]
 gi|326904194|gb|EGE51127.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis W-148]
 gi|328458109|gb|AEB03532.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 4207]
          Length = 423

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 133/435 (30%), Gaps = 43/435 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V   +     + G   + +P  +   L+        D   
Sbjct: 7   FSAPKGVPDYVPPDSAQFVAVRDGLLAAARQAGYSHIELPIFEDTALFARGVGESTDVVS 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGVDDPALDAEVIAIADA---GFRSLGLDGFRLEITSLGDESCRPQYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     +       +  +  +   + +   ++    +  A       
Sbjct: 181 ELLQEFLFGLDLDEDTRRRAGINPLRVLDDKRPELRAMTASAPVLLDHLSDVAKQHFDTV 240

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKGADGKD--HY 311
               D+L     ++ R             E  H    G +  +     + G   +     
Sbjct: 241 LAHLDALGVPYVINPRMVRGLDYYTKTAFEFVHDG-LGAQSGIGGGGRYDGLMHQLGGQD 299

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    +G+G  R V A+  E    G         A   +  + +    ++       +  
Sbjct: 300 LSGIGFGLGVDRTVLALRAEGKTAGD-------SARCDVFGVPLGEAAKLRLAV---LAG 349

Query: 371 RLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           RL   G  V     D G + G+    A   G  + ++ G + +    V +K   TG +  
Sbjct: 350 RLRAAGVRVDLAYGDRGLK-GAM-RAAARSGARVALVAGDRDIEAGTVAVKDLTTGEQVS 407

Query: 429 MSLEEVINYASHRFS 443
           +S++ V+     R +
Sbjct: 408 VSMDSVVAEVISRLA 422


>gi|332364654|gb|EGJ42423.1| serine--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 425

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|327472776|gb|EGF18203.1| serine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 425

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|315142782|gb|ADT80966.1| glutamyl- and prolyl-tRNA synthetase [Promyrmekiaphila sp.
           JEB-2010]
          Length = 148

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D G+  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTGEKQYVYQNSWGL-SSRSIGVAVMVHGDNSGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  +V  D CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLSESDKKVLADKCEALEKELRETSVRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|215431535|ref|ZP_03429454.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289754698|ref|ZP_06514076.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289695285|gb|EFD62714.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
          Length = 423

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 133/435 (30%), Gaps = 43/435 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V   +     + G   + +P  +   L+        D   
Sbjct: 7   FSAPKGVPDYVPPDSAQFVAVRNGLLAAARQAGYSHIELPIFEDTALFARGVGESTDVVS 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGVDDPALDAEVIAIADA---GFRSLGLDGFRLEITSLGDESCRPQYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     +       +  +  +   + +   ++    +  A       
Sbjct: 181 ELLQEFLFGLDLDEDTRRRAGINPLRVLDDKRPELRAMTASAPVLLDHLSDVAKQHFDTV 240

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKGADGKD--HY 311
               D+L     ++ R             E  H    G +  +     + G   +     
Sbjct: 241 LAHLDALGVPYVINPRMVRGLDYYTKTAFEFVHDG-LGAQSGIGGGGRYDGLMHQLGGQD 299

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    +G+G  R V A+  E    G         A   +  + +    ++       +  
Sbjct: 300 LSGIGFGLGVDRTVLALRAEGKTAGD-------SARCDVFGVPLGEAAKLRLAV---LAG 349

Query: 371 RLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           RL   G  V     D G + G+    A   G  + ++ G + +    V +K   TG +  
Sbjct: 350 RLRAAGVRVDLAYGDRGLK-GAM-RAAARSGARVALVAGDRDIEAGTVAVKDLTTGEQVS 407

Query: 429 MSLEEVINYASHRFS 443
           +S++ V+     R +
Sbjct: 408 VSMDSVVAEVISRLA 422


>gi|282555147|gb|ADA82668.1| ProS [Candidatus Blochmannia vafer]
          Length = 77

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 53/77 (68%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR ++Y L  L+E P++ E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+E
Sbjct: 1  MRATQYLLTTLKEIPKNCETISHQLMLRSGMIRQISTGLYTWLPIGLRVLRKVENIVRDE 60

Query: 61 QNRTGAIEMSVPTLQSA 77
           N    IE+S+P +Q A
Sbjct: 61 MNNISFIEISMPIIQPA 77


>gi|227431712|ref|ZP_03913742.1| histidyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352536|gb|EEJ42732.1| histidyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 433

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 126/425 (29%), Gaps = 33/425 (7%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I Q  KG    LP       +V A+ R         E+  P  ++ +++  S     D  
Sbjct: 5   IFQRPKGTADLLPQKTVQWQHVEAVARVLFGDYNFKEIRTPLFENFEVFSRSAGDTSDVV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            KEM    D+ D+ +   P     +   +          + P+  + +   FR E RP+ 
Sbjct: 65  TKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEFDKPYKAFYMGPMFRYE-RPQA 123

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F    A  F             M + +   F  LGLK++ +   +  +G   S
Sbjct: 124 G--RFRQFHQIGAEIFGSDSPALDAEVIAMVIDF---FQTLGLKNLKVAINT--LGDKES 176

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +    A     +    +   D       +     D     + +               +
Sbjct: 177 RDAYRQALIDYLKPHFDELSADSQARLEKNPLRVLDSKDPRDQLFVADAPSILDFLSEKS 236

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMG--SYGIG 320
            K ++ L +         ++      G  Y               K      G   Y   
Sbjct: 237 TKHWEKLQDILTALNLDFDIDTTMVRGLDYYNDTIFEIMTTDESLKGAATIAGGGRYSGL 296

Query: 321 AMRV---------VAAVIESSHD--GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                            +E   D      + P         ++NI     V      KI 
Sbjct: 297 VEEFGGPETPGVGFGIGVERLLDLLQAQNVAPTEEQNLDFYVVNIGDTTDVI---ATKIV 353

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             +   G     D + +   +QF  AD       + +G + + +  V IK+   G ++ +
Sbjct: 354 QAVRSFGYVAERDYLSKSAKAQFKAADRHHAKYVITIGEQELEEQIVNIKNMTNGEQKSV 413

Query: 430 SLEEV 434
            L E+
Sbjct: 414 QLSEL 418


>gi|205374219|ref|ZP_03227018.1| histidyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 421

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 147/444 (33%), Gaps = 62/444 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           +  +G    LP   +    +  + ++        E+  P  + A+L+        D   K
Sbjct: 4   KIPRGTQDILPGTVEKWQYIEEVAKDICRNFQYKEIRTPIFEHAELFTRGVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS----YRNLPFTFYQIQLKFRDELRPRF 147
           EM    DR D+ +   P   E    + RS +++    + N P   +     FR E RP+ 
Sbjct: 64  EMYTFKDRGDRDLSLRP---EGTAAVVRSFVENKMFGHANQPVKLFYSGPMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    + ++  +GLK + +   S  +G + S
Sbjct: 120 G--RYRQFVQFGVEALGSEDPAIDAE---VISLAMSLYQAVGLKKLKLIVNS--LGDNES 172

Query: 208 ----------------HEFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                            EF        +    ++   K   D  + +      D ++  S
Sbjct: 173 RVAHREALIAHFKPRIEEFCTDCQTRLEKNPLRILDCKKDRDHELMATAPSILDYLNEES 232

Query: 248 IVEQWT-------APYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLP 297
                               D    +  D             E  G I     G +Y+  
Sbjct: 233 RSYFKKVQSYLSLMDVEFVVDPTLVRGLDYYNHTAFEIMSDAEGFGAITTLCGGGRYN-- 290

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    G      +G + +   R++AAV     D + +  P      K+    +   
Sbjct: 291 ---GLVEEIGGPSTPGIG-FALSIERLLAAV-----DAEEVELPVES---KVDCYVVALG 338

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           DQ  +D   KI + L K G     D +  ++ +QF  AD +      ++G + +S   + 
Sbjct: 339 DQ-AKDYSVKIVSDLRKAGLSAERDYLDRKLKAQFKAADRVQARYVAVLGEEELSSGTIN 397

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           +K   +G +E + + +++     R
Sbjct: 398 LKDMESGEQESIEISKLVEAIQER 421


>gi|332365004|gb|EGJ42769.1| histidine--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 426

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 140/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFKKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 TYFAAVRSMLETLQIPYIINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P  +A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVKLPIEIA-LDVYVAVLGAG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADIFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|226320412|ref|ZP_03795979.1| glycyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226234165|gb|EEH32879.1| glycyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 445

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/479 (15%), Positives = 145/479 (30%), Gaps = 103/479 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +   N+     +         + +       
Sbjct: 10  LAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMVYLHENIVGLDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEE------------VMTDIFRSH 121
            ++W  SG  D +   M+   D   R     I    +                  +F++H
Sbjct: 70  PEIWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTH 129

Query: 122 I-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           I                              S   +PF   Q+   FR+E+  +  + R+
Sbjct: 130 IGVVEDSSSEVYLRPETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-HRLGLKSIPMRAESGPIGGDLSHEFI 211
            EF   +   F + P+     +     + +  F   L +    +R             F 
Sbjct: 190 CEFEQMEMQFF-VHPKQIDEWFCYWQQNRMNFFIETLKISPNRLR-------------FK 235

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               T       +   +++  P                      +     +HN   +D  
Sbjct: 236 AHDSTQLAHYAKAAFDIEYEFP--------------------FGFQEVEGIHNRGNYDLT 275

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
              K  +   +   H      KY        + + G    V M      +        E 
Sbjct: 276 QHAKFSNKPKVFEYHDLLTKEKYVP---YVIETSAGLTRSVLMTLCDAYSE-------EE 325

Query: 332 SHDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             DG     +     +AP+KI++  +    ++  +   +IY  L      +F+DD G  I
Sbjct: 326 LSDGDKRIVLRLHPKLAPYKIAIFPLVKKVELT-EIARRIYMELCD-DFHIFYDDSG-TI 382

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           G ++   D +G P  V +    + D  V I+ R +  ++ + + ++ +Y      N + 
Sbjct: 383 GKRYRRQDEIGTPYCVTIDYNTIEDETVTIRERNSMTQKRIFINDLYSYIKTEILNYKE 441


>gi|324991702|gb|EGC23634.1| serine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 425

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S      M  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELENMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|315142780|gb|ADT80965.1| glutamyl- and prolyl-tRNA synthetase [Aptostichus atomarius]
          Length = 148

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D G+  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTGEKQYVYQNSWGL-SSRSIGVAVMVHGDNSGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  D C  +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGITVNSPESEKKLLADKCATLEKELREAAIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|332359167|gb|EGJ36988.1| serine--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 425

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILKKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|289550604|ref|YP_003471508.1| Histidyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289180136|gb|ADC87381.1| Histidyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 419

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 132/437 (30%), Gaps = 46/437 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP        +   + +        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPEETAKWRYIENKLAQLMKLYNYQEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ ++++   P   E    + RS+I++        P   Y     FR E +
Sbjct: 60  VQKEMYTFKDKGNRSITLRP---EGTAAVVRSYIENKMQGLPNQPVKLYYNGPMFRYERK 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F      +              M    ++I+   GLK + +   S  IG 
Sbjct: 117 QK---GRYRQFTQFGVEAIGAEDPSIDAEVLAMV---MQIYQSFGLKHLKLVINS--IGD 168

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S +     +  E  V   +  +D       +            +      A  +    
Sbjct: 169 AESRK-----EYNEALVKHFEPVIDDFCSDCQSRLHTNPMRILDCKVDRDKKAIKTAPKI 223

Query: 265 EKLFDSLPENKRVSARG-IEVGHIFYF-------GTKY--SLPMSATFKGADGKDHYVQM 314
               +   +    + +  ++  +I Y        G  Y             +       +
Sbjct: 224 TDYLNDESKAYYEAVKQYLDDLNIPYVEDSNLVRGLDYYTHTAFELMMDNPNYDGAITTL 283

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---------- 364
              G     ++  +   +  G G           +   NI   +    D           
Sbjct: 284 -CGGGRYNGLLQLLDGPNQTGIGFALSIERLLLALEEENIDIVENETLDLFIVTMGEAAN 342

Query: 365 --CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               K+     K G     D +  +I  Q   AD L     +++G + + +  VE+KH  
Sbjct: 343 HFAVKLLNDCRKNGISADKDYLNRKIKGQMKQADRLNATYTIVIGDQELDNQIVEVKHME 402

Query: 423 TGIREDMSLEEVINYAS 439
           +G  E +  E +++Y  
Sbjct: 403 SGNSETVKFENLLSYFK 419


>gi|327462380|gb|EGF08705.1| serine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 425

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|223996893|ref|XP_002288120.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220977236|gb|EED95563.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 462

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 121/350 (34%), Gaps = 66/350 (18%)

Query: 105 IYGPTHEEVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   +++ +  S   LPF   QI   FR+E+ PR  + RSREF   +   F
Sbjct: 164 YLRPETAQGIFINYKNVLGTSRSKLPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYF 223

Query: 164 DLTPEGSKHSYNKM-FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
               + +   ++K            +GLK          + G   HE   LA        
Sbjct: 224 IPPGDEAWKPFHKQWIEDSESFLKSVGLKE--------ELMGYDVHEGDGLA-------- 267

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                                +   I  ++         +     FD     +       
Sbjct: 268 -----------------HYARACTDITFKFPFGVQELMGIAARGDFDLKSHTEGSGKV-- 308

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGII-- 339
                              +   + K+ +   +    +G  R++ A+I S++    I   
Sbjct: 309 -----------------LDYFDEETKEKFIPHVIEPSLGVDRLILALICSAYAEDEINGE 351

Query: 340 ------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                 +  S+AP K+S++ +  + +    A  +++ +L +   +  WD  G  IG ++ 
Sbjct: 352 KRNYLSFHPSIAPVKVSVLPLVKNKEPLVKAARELFEKLQR-RWNCQWDQTGA-IGRRYR 409

Query: 394 VADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            AD +G P  V V  + +  D  V ++ R +  +  + ++EV+ Y S   
Sbjct: 410 RADEIGVPFCVTVDFETIEDDGAVTVRDRDSTEQVRIPMDEVVPYLSKMI 459


>gi|332157838|ref|YP_004423117.1| glycyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331033301|gb|AEC51113.1| glycyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 571

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 166/564 (29%), Gaps = 151/564 (26%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  S+G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 12  QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIERKIREAFIREGFFEIETPDITP 71

Query: 77  ADLWVESG-------------------RYDSYGKE------------------------- 92
             +++ SG                   R D   +E                         
Sbjct: 72  EQVFIASGHVEKFVDPIVECKKCGARFRADHLIEEALGIDVEGKSAEEMTKIIRENNLKC 131

Query: 93  ---------------ML--RLADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQ 134
                          M    +    DK     P T + +  +  R +  +   LPF  +Q
Sbjct: 132 PECGGELSDVFYFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQ 191

Query: 135 IQLKFRDELRPRFGVMRSRE----------------------------------FLMKDA 160
           I   +R+E+ PR G++R RE                                    +KD 
Sbjct: 192 IGKAYRNEISPRQGMIRLREFTQAEVEIFFNPKEAEHPHFHEVKDEILKLYPIEHQVKDL 251

Query: 161 YSFDLTPEGSKHSYNKM-------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              ++T E +      M        V   RI   +GL    +R                 
Sbjct: 252 GEIEVTAEEAVKRGYLMNTFFAYYMVMIKRILLDIGLPEDKIRFRQQ----LPEERAHYS 307

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           ADT + +V+  +      +        D+     +                 K       
Sbjct: 308 ADTWDAEVYSERFGWVECVGLAYRTDYDLKRHMKMSGADLTVMIHYDKPKIVKRLKVSLN 367

Query: 274 NK------------------------------RVSARGIEVGHIFYFGTKYSLPMSATFK 303
            K                               ++ +G  V + F   TK    +    +
Sbjct: 368 MKSVGPKLKKNAKIINNKLKEMSQEELRKLVDEINRKGKIVINGFEL-TKEDFIIKEVEE 426

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSH--DGKGIIWPDS---VAPFKISLINIKAHD 358
              G+     +     G  R    ++E+S   D  G I+      +AP +++++ + A  
Sbjct: 427 KVTGEKIIPHVLEPSFGIDRPFYLLLENSLTVDEDGRIYLKIKKDMAPIEVAVLPLVAK- 485

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +        +Y RL + G  V +D+  + IG ++   D +G P  V + ++   D  V I
Sbjct: 486 EPLTSIAYNLYRRLQRDGFIVVYDE-KDSIGKRYMRYDEIGTPYCVTIDNQTPEDGTVTI 544

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +  + +EEV        
Sbjct: 545 RDRDTREQIRVKIEEVPKKLRQLI 568


>gi|255038651|ref|YP_003089272.1| glycyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254951407|gb|ACT96107.1| glycyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 494

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 126/374 (33%), Gaps = 74/374 (19%)

Query: 93  MLRLAD----RNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M          +   +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 170 MFSTQVGSVAEDANMIYLRPETAQGIFVNFLNVQKSGRMKVPFGIAQIGKAFRNEIVARQ 229

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P   +  Y K   + L+    +GL +  ++           
Sbjct: 230 FIFRMREFEQMEMQFF-VRPGTEQEWYEKWKEARLKFHKAIGLPAEKLK----------Y 278

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+   LA   +  V                          I  ++   +     +H+   
Sbjct: 279 HDHDKLAHYAKAAV-------------------------DIEFEFPFGFREIEGIHSRSD 313

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRV 324
           FD     +    +            +Y     A     +GK +      +    +GA R+
Sbjct: 314 FDLRNHQELSKKKQ-----------QY---FDAD-LDENGKPYGNYIPYVVETSVGADRL 358

Query: 325 VAAVIESSHDGK------------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
             A   +++  +             +    ++APFK +++ +   D +  +  + +   L
Sbjct: 359 FLATFCNAYTVESVGEGDAAKERTFLKLHPALAPFKAAVLPLVKKDGLA-EKAQALANSL 417

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                   +DD    IG ++   DL+G P  ++V  + + D  V I+HR T  +E + + 
Sbjct: 418 KSS-FRTVYDD-NAAIGKRYTRQDLIGTPYCIVVDYQTMEDDTVTIRHRDTMEQERVHIS 475

Query: 433 EVINYASHRFSNNR 446
           E+     ++ +  R
Sbjct: 476 ELKEKIGYQVAIER 489


>gi|9955267|pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
           Synthetase
 gi|9955268|pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
           Synthetase
          Length = 420

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 132/444 (29%), Gaps = 58/444 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP   K    +   + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  +G   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIYQSFGLKHLKLVINS--VGDMAS 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +        +            +      A  +       
Sbjct: 172 RK-----EYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDF 226

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHYVQ 313
            +   +      +     ++   G  Y+                        +       
Sbjct: 227 LNEESKAYYEQVKA----YLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITT 282

Query: 314 MGSYGIGAMRVVAAVIESS--HDGKGIIWPDSVAPFK---------------ISLINIKA 356
           +   G         ++E        GI +  S+                   + L  +  
Sbjct: 283 LCGGG-----RYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTM 337

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            DQ  R    K+   L   G     D +  +I  Q   AD LG    +++G + + ++K+
Sbjct: 338 GDQADR-YAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKI 396

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
           ++K+  TG  E + L+ ++ Y   
Sbjct: 397 DVKNMTTGESETIELDALVEYFKK 420


>gi|11387153|sp|Q9RSR5|SYG_DEIRA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
          Length = 506

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 115/378 (30%), Gaps = 67/378 (17%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRF 147
           M R         +      P   + +   F++ + S  R LPF   QI   FR+E+ PR 
Sbjct: 169 MFRTTIGPVADEESYGYLRPETAQGIFTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRN 228

Query: 148 GVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            + R RE    +   F    T E                                     
Sbjct: 229 FIFRVRELEQMEIEFFVTPGTDEEWHE--------------------------------- 255

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             H         E Q    +      +P E+       + + + +  T  +     + N 
Sbjct: 256 --HWLEKRLKWWEDQGVPREKIEILDVPKEDLAHYSKRTYDLMYDYPTLGHEEIEGIANR 313

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRV 324
             +D     K  S    E+G +             T    +  K     +     G  R 
Sbjct: 314 SDYDLGSHTKSQS----ELGLVAKVEENNDSIAKLTIPHPETNKPVVPFVIEPSAGVDRA 369

Query: 325 VAAVIESSHD----GKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           + AV+  +        G     +     +AP K+++I +  + +   D  + I A L  +
Sbjct: 370 MLAVLSEAFTKETLENGNERIVLKLKPHLAPIKVAVIPLARNREEITDVAKAIKAELQGL 429

Query: 376 GC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-------GSKFVSD--SKVEIKHRLTGI 425
           G   V ++D G  IG  +   D +G P  V V       G          V ++ R T  
Sbjct: 430 GLGRVLYEDSGN-IGKAYRRHDEVGTPYCVTVDFDTVGLGENTDESLKDTVTVRDRDTLA 488

Query: 426 REDMSLEEVINYASHRFS 443
           +E + + E+  +   +  
Sbjct: 489 QERVKISELAGWIQAKLR 506


>gi|15807053|ref|NP_295782.1| glycyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|6459849|gb|AAF11606.1|AE002042_1 glycyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 521

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 115/378 (30%), Gaps = 67/378 (17%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRF 147
           M R         +      P   + +   F++ + S  R LPF   QI   FR+E+ PR 
Sbjct: 184 MFRTTIGPVADEESYGYLRPETAQGIFTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRN 243

Query: 148 GVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            + R RE    +   F    T E                                     
Sbjct: 244 FIFRVRELEQMEIEFFVTPGTDEEWHE--------------------------------- 270

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             H         E Q    +      +P E+       + + + +  T  +     + N 
Sbjct: 271 --HWLEKRLKWWEDQGVPREKIEILDVPKEDLAHYSKRTYDLMYDYPTLGHEEIEGIANR 328

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRV 324
             +D     K  S    E+G +             T    +  K     +     G  R 
Sbjct: 329 SDYDLGSHTKSQS----ELGLVAKVEENNDSIAKLTIPHPETNKPVVPFVIEPSAGVDRA 384

Query: 325 VAAVIESSHD----GKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           + AV+  +        G     +     +AP K+++I +  + +   D  + I A L  +
Sbjct: 385 MLAVLSEAFTKETLENGNERIVLKLKPHLAPIKVAVIPLARNREEITDVAKAIKAELQGL 444

Query: 376 GC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-------GSKFVSD--SKVEIKHRLTGI 425
           G   V ++D G  IG  +   D +G P  V V       G          V ++ R T  
Sbjct: 445 GLGRVLYEDSGN-IGKAYRRHDEVGTPYCVTVDFDTVGLGENTDESLKDTVTVRDRDTLA 503

Query: 426 REDMSLEEVINYASHRFS 443
           +E + + E+  +   +  
Sbjct: 504 QERVKISELAGWIQAKLR 521


>gi|299535679|ref|ZP_07049000.1| histidyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298728879|gb|EFI69433.1| histidyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 422

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 145/439 (33%), Gaps = 46/439 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  +  +G    LP   +    V AIIR+        E+  P  +  DL+        D 
Sbjct: 1   MSFKVPRGTQDILPGQSEKWQKVEAIIRDICRVYRYNEIRTPIFEQTDLFARGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P +   +   +  H      + P     +   FR E R + 
Sbjct: 61  VQKEMYTFEDRGGRSLTLRPENTAGVVRAYVEHKMFGAPDQPVKLSYLGPMFRYE-RQQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    + ++   GLK + +   S  +G   +
Sbjct: 120 G--RYRQFVQFGVEAIGSADPAIDAE---VIALAMDVYESAGLKDLKLVINS--LGDKET 172

Query: 208 ----------------HEFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                           HEF             ++   K   + P+        D ++  S
Sbjct: 173 RDTHRTALLQHFEPHIHEFCSDCQNRLQKNPLRILDCKVDREHPLMQTAPALTDFLTEES 232

Query: 248 I-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKG- 304
                    Y  T  +  E   + +      +    E+      FG   +L     + G 
Sbjct: 233 AGYFTQVKSYLDTLGISYEVDPNLVRGLDYYNHTTFEIMSTASGFGAITTLCGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+          +  D+ +   + +I +       +
Sbjct: 293 VQEIGGPDVPGIG-FALSIERLLLAL------EAEGVELDTASGLDVYIIAMG---DEAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++ +     G     D +  ++ +Q   AD LG    +++G   + +    +KH  
Sbjct: 343 QKAVELTSTFRAKGLATEMDYLDRKMKAQMKSADRLGAKYTLVLGETELEEQAAAVKHME 402

Query: 423 TGIREDMSLEEVINYASHR 441
           +G +  ++  E++NY +H+
Sbjct: 403 SGEQHKVAFSELVNYLTHK 421


>gi|325695149|gb|EGD37050.1| serine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 425

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|226366292|ref|YP_002784075.1| histidyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|254782341|sp|C1B4E1|SYH_RHOOB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226244782|dbj|BAH55130.1| histidyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 423

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 133/429 (31%), Gaps = 41/429 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V   +       G   + +P  +   L+        D   
Sbjct: 7   FSAPKGVPDYVPPQSSEFVAVRDGLTRAARLAGYGHIELPIFEDTGLFARGVGESTDVVS 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGDRSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLSYAGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL+   +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGVDDPALDAEVIAVADA---GFRGLGLEGFRLEITSLGDDTCRPQYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +   EF+      E     ++      +  +  +  ++ +   ++    +  A       
Sbjct: 181 ERLQEFLFALPLDEETRRRAEINPLRVLDDKRKEVREMTADAPLMLDHLSDTAKAHFDEV 240

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     V+ R             E  H    G +  +     + G  A      
Sbjct: 241 LAHLDALGVPYVVNPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQP 299

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           +    +G+G  R V A+              S A  ++  + +    +  +     I  +
Sbjct: 300 LSGIGFGLGVDRTVLALAAEGKTAG------STARCEVFGVPLG---EEAKAKLVVIAQQ 350

Query: 372 LSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L   G  V         G +     AD  G  L +++G + +++  V IK+  TG +E +
Sbjct: 351 LRAQGIRVDLAYGNR--GVKGAMKAADRSGAALALVLGDRDIAEGTVGIKNLATGDQESV 408

Query: 430 SLEEVINYA 438
           S  +V+   
Sbjct: 409 SSADVLARV 417


>gi|262283251|ref|ZP_06061018.1| seryl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261503|gb|EEY80202.1| seryl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 425

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|327467137|gb|EGF12647.1| serine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 425

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|332366431|gb|EGJ44182.1| serine--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 425

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|169829346|ref|YP_001699504.1| histidyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|229558694|sp|B1HV72|SYH_LYSSC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|168993834|gb|ACA41374.1| Histidyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 422

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 144/439 (32%), Gaps = 46/439 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  +  +G    LP   +    V AIIR+        E+  P  +  DL+        D 
Sbjct: 1   MSFKVPRGTQDILPGQSEKWQKVEAIIRDICRVYRYNEIRTPIFEQTDLFARGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P +   +   +  H      + P     +   FR E R + 
Sbjct: 61  VQKEMYTFEDRGGRSLTLRPENTAGVVRAYVEHKMFGAPDQPVKLSYLGPMFRYE-RQQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    + ++   GLK + +   S  +G   +
Sbjct: 120 G--RYRQFVQFGVEAIGSADPAIDAE---VIALAMDVYESAGLKDLKLVINS--LGDKET 172

Query: 208 ----------------HEFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                           HEF             ++   K   + P+        + ++  S
Sbjct: 173 RDTHRTALLQHFEPHIHEFCSDCQNRLQKNPLRILDCKVDREHPLMKTAPALTEFLTEES 232

Query: 248 -IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKG- 304
                    Y  T  +      + +      +    E+      FG   +L     + G 
Sbjct: 233 AAYFAQVKSYLDTLGITYVVDPNLVRGLDYYNHTTFEIMSTASGFGAITTLCGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G + +   R++ A+          +  D+ +   + +I +    +  +
Sbjct: 293 VQEIGGPDVPGIG-FALSIERLLLAL------EAEGVELDTASGLDVYIIAMG---EDAK 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++ +     G     D +  ++ +Q   AD LG    +++G   + +    +KH  
Sbjct: 343 QKAVELTSTFRAKGLATEMDYLDRKMKAQMKSADRLGAKYTIVLGETELEEQAAAVKHME 402

Query: 423 TGIREDMSLEEVINYASHR 441
           +G +  ++  E++NY S +
Sbjct: 403 SGEQHKVAFSELVNYLSQQ 421


>gi|329768512|ref|ZP_08260000.1| histidyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328836662|gb|EGF86319.1| histidyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 426

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/449 (14%), Positives = 145/449 (32%), Gaps = 56/449 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP        +   +RE        E+  P  +S +L+        D 
Sbjct: 1   MVISMPRGTQDILPDESVKWQYIEGKLREISKNFCYEEIRTPMFESTELFSRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRF 147
             KEM    D+ ++++   P         +  +    + + P   Y +   FR E + + 
Sbjct: 61  VQKEMYTFMDKGNRSLTLRPEGTAGTVRSYIENKLFAKTIQPQKLYYVGPMFRYERKQK- 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F+    Y  ++  E S     ++      I+   G+++I +   S        
Sbjct: 120 --GRYRQFVQ---YGVEVIGEESPKIDAEVISLAYNIYRMFGIENIKVSINS-------- 166

Query: 208 HEFIVLADTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                L +  E Q +        +  I     D ++ +  N +        A    + + 
Sbjct: 167 -----LGNPEERQAYNEALVKHFEPRINEFCEDCNNRLYKNPMRILDCKVDAEHELIKSA 221

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHY 311
                    +        + H+   G KY +                       + +   
Sbjct: 222 PRLLEYLGEESKQYFAEVLKHLDALGVKYEIDHNLVRGLDYYTHTAFEIMIDNPEVELKT 281

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-------------PFKISL-INIKAH 357
           +     G G    +  +++   D KGI +  S+              P   ++ + + A 
Sbjct: 282 L----CGGGRYNGLIKLLDGPEDKKGIGFALSIERLLLALESENIELPIDDTIDVFVVAM 337

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +A  K+   L   G  V  D   +++ +Q  +AD       +I+G   +    + 
Sbjct: 338 GEEASNAGVKLTNDLRLAGYSVQNDYFDKKMKAQMKIADRYNAKYSIIIGQSELESGTLV 397

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +K   +  +E + LE +++Y   +    +
Sbjct: 398 VKDMKSFEQETIKLENIVDYLQEKLRGEK 426


>gi|323350735|ref|ZP_08086396.1| histidine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322123155|gb|EFX94846.1| histidine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 426

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 140/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 TYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G  V  D +  ++ +QF  AD+      + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAVERDYLDRKLKAQFKSADIFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|255325082|ref|ZP_05366188.1| histidine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297647|gb|EET76958.1| histidine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 429

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 138/431 (32%), Gaps = 38/431 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  + P    A   V   + E+ + +G   + +P  +   L+        D   KE
Sbjct: 12  APKGVPDYFPPQSAAFYKVRQTMVEQAHLSGFQHIELPIFEDTALFARGVGESTDVVSKE 71

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR D+++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 72  MYTFADRGDRSVTLRPEGTAGVMRSVIEHNLDRGQLPVKLNYFGPFFRYE-RPQAG--RY 128

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R F  LGL    +   S       P   + 
Sbjct: 129 RQLQQVGVEAIGVDDPALDAE---VIALADRSFRALGLSGFRLELTSLGDRNCRPAYREK 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+   D  E     ++      +  +  +  + ++   ++                 
Sbjct: 186 LQKFLFKLDLDEETRHRAEINPLRVLDDKRPEVQEQLADAPLMLDHLNDECREHFETVTG 245

Query: 267 LFDSLP---ENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
           + D +    E      RG++              G +  +     + G  A      +  
Sbjct: 246 MLDDMGVAYEINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSG 305

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             YG+G  R + A+     + +GI      +   +  + + A     +     +   L K
Sbjct: 306 IGYGLGVDRALLAL-----EAEGITLDGVESRVDVFGVALGA---AAKRTMTTLINDLRK 357

Query: 375 VGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G      + D G + G+    AD  G    +++G + + +  V +K      + D+ + 
Sbjct: 358 AGISADMSFGDRGLK-GAM-KGADRAGARFALVLGEQELENGTVALKDLAAHEQHDVKVS 415

Query: 433 EVINYASHRFS 443
           ++++  +   +
Sbjct: 416 DLVSVLAREMN 426


>gi|111023856|ref|YP_706828.1| histidyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|123045389|sp|Q0S1B6|SYH_RHOSR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110823386|gb|ABG98670.1| histidine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 423

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 131/428 (30%), Gaps = 39/428 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V   +       G   + +P  +   L+        D   
Sbjct: 7   FSAPKGVPDYVPPQSSEFVAVRDGLTRAARLAGYGHIELPIFEDTGLFARGVGESTDVVS 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGDRSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLSYAGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGVDDPALDAEVIAIADA---GFRGLGLDGFRLEITSLGDDTCRPQYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +   EF+      E     ++      +  +  +  ++ +   ++    +  A       
Sbjct: 181 ERLQEFLFALPLDEETRRRAEINPLRVLDDKRKEVREMTADAPLMLDHLSDTAKAHFDEV 240

Query: 265 EKLFDS---LPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYV 312
               D+            RG++      F       G +  +     + G  A      +
Sbjct: 241 LAHLDALSVPYVVNPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQPL 300

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +G+G  R V A+              S A  ++  + +    +  +     I  +L
Sbjct: 301 SGIGFGLGVDRTVLALAAEGKTAG------STARCEVFGVPLG---EEAKAKLVVIAQQL 351

Query: 373 SKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G  V         G +     AD  G  L +++G + ++D  V IK+  TG +E +S
Sbjct: 352 RAQGIRVDLAYGNR--GVKGAMKAADRSGAALALVLGDRDIADGTVGIKNLATGDQESVS 409

Query: 431 LEEVINYA 438
             +V+   
Sbjct: 410 SADVVARV 417


>gi|332357990|gb|EGJ35823.1| serine--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 425

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + +    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHNSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYEELEKMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|268317174|ref|YP_003290893.1| histidyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262334708|gb|ACY48505.1| histidyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 436

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 139/419 (33%), Gaps = 51/419 (12%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
             +V  ++RE   R    E+  P L+  +L     G+  D   KEM     R D   +  
Sbjct: 34  WQHVEQVVREVLERFNFREIRTPILEPTELIARGVGQLTDIVSKEMFAFR-RGDTNYVLR 92

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H    +      Y I   FR E  P+ G  R R+F            
Sbjct: 93  PEVTAPVMRAYLQHRLDQQGAVQKLYYIGPCFRAE-NPQKG--RYRQFHQFGVELIGAET 149

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLSHEFIVLA------- 214
             +      +  + + ++   GLK++ +R      AES P   +    ++          
Sbjct: 150 PEADAE---VIAAMMAVYEAFGLKNLRLRINTLGDAESRPRYREALRAYLQPLADRLTPT 206

Query: 215 -----DTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                +T   ++  +KD  +  +        DF D               A       + 
Sbjct: 207 SRQRLETNPLRILDTKDERERRLLEGAPRIIDFVDEKGRAHYEAVKAHLQALGIAFEEDP 266

Query: 267 LFDSLPENKRVSARGIE---VGHIFYF--GTKYSL-PMSATFKGADGKDHYVQMGSYGIG 320
                 +    +   +E   +G       G +Y L  M        G D  V    +  G
Sbjct: 267 FLVRGLDYYTHTTFELESPDLGAQSALAGGGRYDLLAMDL------GHDAPVPAVGFAAG 320

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+  A+       +G  +P+   P    L+++    +            L + G  V 
Sbjct: 321 IERLFIAL-----QAQGYAFPEE-PPLDAYLVSLG---EEAMRRALVEAQALRRAGLRVD 371

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            D  G  + +Q   A+       VI+G + +++ +  ++   +G ++++ L+E+ ++  
Sbjct: 372 LDLKGRSMKAQMREANRQQARYAVIMGERELAEGRAVVRDMQSGQQQEVPLDELADFLK 430


>gi|147669357|ref|YP_001214175.1| glycyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|146270305|gb|ABQ17297.1| glycyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 443

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 78/469 (16%), Positives = 146/469 (31%), Gaps = 98/469 (20%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I   S   G     + + PLG +   NV          +R   + +    +  
Sbjct: 17  LARRRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMH 76

Query: 77  ADLWVESGRYDSYGKEM---------LRLADRNDKAMIYGP---THEEVMTDIFRSHI-- 122
             +W  SG    +   M          R  D  +          T       +F++ +  
Sbjct: 77  PRVWEASGHVAGFSDPMVDCKKCKMRWRPTDLAEPKCPACGGELTESRQFNLMFKTFMGP 136

Query: 123 ---------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                       + + LPF   QI   FR+E+     + RSREF
Sbjct: 137 IEEAASIVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTGNFIFRSREF 196

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
              +   F     G+  S  + +  Y L  +  LG+    +R          S E    A
Sbjct: 197 EQMELEYFVKP--GADDSCLEEWTQYRLNWYKNLGMNPENLRLR-----AHRSDELAHYA 249

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G   V  +       +             +  + Q       + +  +E+  +     
Sbjct: 250 -KGCYDVEYNFPMGWSELEGI------ANRRDFDLTQHAKYSGKSLEYFDEETKEHFVPY 302

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
               + G+E   + +    Y+          D     + +                    
Sbjct: 303 VIEPSAGVERSTLAFLIDAYAEE-----PDKDEIRTVLHLH------------------- 338

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   ++AP+KI+++ + +  ++  D   KIYA L K    V +DD  + IG ++  
Sbjct: 339 -------PALAPYKIAVLPL-SKKEILSDYARKIYADLRKCWM-VAYDDS-QSIGRRYRR 388

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D +G P  V V  + + D  V ++ R +  +  + + E+    + + S
Sbjct: 389 QDEIGTPYCVTVDFQSLEDGMVTVRDRDSMAQIRVKVSELSYILAAKLS 437


>gi|224476673|ref|YP_002634279.1| glycyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254781880|sp|B9DNL1|SYG_STACT RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|222421280|emb|CAL28094.1| putative glycyl-tRNA synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 463

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 122/357 (34%), Gaps = 54/357 (15%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L  + ++ +S  +     
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFAEKWLLDLGIKNDSIRLRDHDE 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        +     FP            +   + +              E  
Sbjct: 268 DELSHYSN------ATTDIEYKFPFGWGELWGIASRTDYDLKQHSEFSGDDFKYHDPETN 321

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              +P     S            G  + +L         +G +        G    R V 
Sbjct: 322 EKYIPYCIEPS-----------LGADRVTLAFLCDAYDREGVE--------GSKDERTV- 361

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                      + +  ++AP+K +++ +        +   K+Y +LS+    V +D+  +
Sbjct: 362 -----------LHFHPAIAPYKAAVLPLSKK---LSEEAIKVYEQLSE-NFTVDFDES-Q 405

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  +      + D +V ++ R +  +  M + E+ ++ S +  
Sbjct: 406 SIGKRYRRQDEIGTPYCITFDFDSLEDQQVTVRDRDSMEQVRMPISELNDFISEKVR 462


>gi|170035421|ref|XP_001845568.1| bifunctional aminoacyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167877384|gb|EDS40767.1| bifunctional aminoacyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 1534

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 9/171 (5%)

Query: 11   LQENPRDA--EIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    D   E  S +++ +  MI  +   G Y            + A    E  + G  
Sbjct: 1286 LEATKEDCLPEWYS-QVITKGEMIEYYDVSGCYILRHWSFAVWKAIKAWFDAEITKMGVK 1344

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHI 122
            E   P   S A L  E      +  E+  +    +    + +   PT E VM   +   I
Sbjct: 1345 ECYFPIFVSRAALEREKDHIADFAPEVAWVTKSGESDLAEPIAVRPTSETVMYPAYAKWI 1404

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
            +SYR+LP    Q     R E +     +R+REFL ++ ++   T   +   
Sbjct: 1405 QSYRDLPIRLNQWNNVVRWEFKHPQPFLRTREFLWQEGHTAFATQAEATEE 1455



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 9/171 (5%)

Query: 11  LQENPRDA--EIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           L+    D   E  S +++ +  MI  +   G Y            + A    E  + G  
Sbjct: 634 LEATKEDCLPEWYS-QVITKGEMIEYYDVSGCYILRHWSFAVWKAIKAWFDAEITKMGVK 692

Query: 68  EMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHI 122
           E   P   S A L  E      +  E+  +    +    + +   PT E VM   +   I
Sbjct: 693 ECYFPIFVSRAALEREKDHIADFAPEVAWVTKSGESDLAEPIAVRPTSETVMYPAYAKWI 752

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +SYR+LP    Q     R E +     +R+REFL ++ ++   T   +   
Sbjct: 753 QSYRDLPIRLNQWNNVVRWEFKHPQPFLRTREFLWQEGHTAFATHAEATEE 803


>gi|294883812|ref|XP_002771081.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239874299|gb|EER02897.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 142

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--------- 356
           DG        ++ I    V+ A++    D +G++ P  VA  ++ ++ +           
Sbjct: 1   DGARKSAHSITWCIDFG-VIGAMVMVHGDNRGLVVPPIVAETQVVIVPVPPSRGVGPTRW 59

Query: 357 --HDQVCRDACEKIYARLSKVGCD-VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                   + C ++   L   G   V  DD  ++ G +F   DL G PL + +GS+ V  
Sbjct: 60  EMEMDAIENECRELRDILLNDGARCVLDDDRKKRPGFKFTKWDLQGVPLSIRIGSREVET 119

Query: 414 SKVEIKHRLTGIRED 428
           + V + +R TG + +
Sbjct: 120 NTVTLAYRHTGEKVN 134


>gi|329733116|gb|EGG69453.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 420

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 134/440 (30%), Gaps = 50/440 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP   K    +   + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  +G   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIYQSFGLKHLKLVINS--VGDMAS 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +        +            +      A  +       
Sbjct: 172 RK-----EYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDF 226

Query: 268 FDSLPENKRVSARG----IEVGHIFYF----GTKY--SLPMSATFKGADGKDHYVQMGSY 317
            +   +      +     +++ +I       G  Y             +       +   
Sbjct: 227 LNEESKAYYEQVKAYLDDLDIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGG 286

Query: 318 GIGAMRVVAAVIESS--HDGKGIIWPDSVAPFK---------------ISLINIKAHDQV 360
           G         ++E        GI +  S+                   + L  +   DQ 
Sbjct: 287 G-----RYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQA 341

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R    K+   L   G     D +  +I  Q   AD LG    +++G + + ++K+++K+
Sbjct: 342 DR-YAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKN 400

Query: 421 RLTGIREDMSLEEVINYASH 440
             TG  E + L+ ++ Y   
Sbjct: 401 MTTGESETIELDALVEYFKK 420


>gi|270308100|ref|YP_003330158.1| glycyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153992|gb|ACZ61830.1| glycyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 445

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 146/469 (31%), Gaps = 98/469 (20%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I   S   G     + + PLG +   NV          +R   + +    +  
Sbjct: 19  LARRRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMH 78

Query: 77  ADLWVESGRYDSYGKEM---------LRLADRNDKAMIYGP---THEEVMTDIFRSHI-- 122
             +W  SG    +   M          R  D  +          T       +F++ +  
Sbjct: 79  PRVWEASGHVAGFSDPMVDCKNCKMRWRPTDLAEPKCPACGGELTESRQFNLMFKTFMGP 138

Query: 123 ---------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                       + + LPF   QI   FR+E+     + RSREF
Sbjct: 139 VEEAANIVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTGNFIFRSREF 198

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
              +   F     G+  +  + +  Y L  +  LG+    +R          S E    A
Sbjct: 199 EQMELEYFVKP--GADDACLEEWTQYRLNWYKNLGMNPENLRLR-----AHRSDELAHYA 251

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G   V  +       +             +  + Q +       +  +E+  +     
Sbjct: 252 -KGCYDVEYNFPMGWSELEGI------ANRRDFDLTQHSKYSGKALEYFDEETKEHFVPY 304

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
               + G+E   + +    YS          D     + +                    
Sbjct: 305 VIEPSAGVERSTLAFLIDAYSEE-----PDKDEIRTVLHLH------------------- 340

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   ++AP+KI+++ + +  ++  D   KIYA L K    V +DD  + IG ++  
Sbjct: 341 -------PALAPYKIAVLPL-SKKEILSDYARKIYADLRKCWM-VAYDDS-QSIGRRYRR 390

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D +G P  V V  + + D  V I+ R +  +  + + E+    + + S
Sbjct: 391 QDEIGTPYCVTVDFQSLEDGMVTIRDRDSMGQIRVKVSELSYILAAKLS 439


>gi|260205901|ref|ZP_05773392.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289575288|ref|ZP_06455515.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis K85]
 gi|289539719|gb|EFD44297.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis K85]
          Length = 423

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 132/435 (30%), Gaps = 43/435 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V   +     + G   + +P  +   L+        D   
Sbjct: 7   FSAPKGVPDYVPPDSAQFVAVRDGLLAAARQAGYSHIELPIFEDTALFARGVGESTDVVS 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGVDDPALDAEVIAIADA---GFRSLGLDGFRLEITSLGDESCRPQYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     +       +  +  +   + +   ++    +  A       
Sbjct: 181 ELLQEFLFGLDLDEDTRRRAGINPLRVLDDKRPELRAMTASAPVLLDHLSDVAKQHFDTV 240

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKGADGKD--HY 311
               D+L     ++ R             E  H    G +  +     + G   +     
Sbjct: 241 LAHLDALGVPYVINPRMVRGLDYYTKTAFEFVHDG-LGAQSGIGGGGRYDGLMHQLGGQD 299

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    +G+G  R V A+  E    G         A   +  + +    ++       +  
Sbjct: 300 LSGIGFGLGVDRTVLALRAEGKTAGD-------SARCDVFGVPLGEAAKLRLAV---LAG 349

Query: 371 RLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           RL   G  V     D G + G+    A   G  + ++ G + +    V +K   TG +  
Sbjct: 350 RLRAAGVRVDLAYGDRGLK-GAM-RAAARSGARVALVAGDRDIEAGTVAVKDLTTGEQVS 407

Query: 429 MSLEEVINYASHRFS 443
           +S + V+     R +
Sbjct: 408 VSTDSVVAEVISRLA 422


>gi|253733118|ref|ZP_04867283.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728874|gb|EES97603.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 420

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 132/442 (29%), Gaps = 54/442 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP   K    +   + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  +G   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIYQSFGLKHLKLVINS--VGDMAS 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  E  V   +  +        +            +      A  +       
Sbjct: 172 RK-----EYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDF 226

Query: 268 FDSLPENKRVSARG----IEVGHIFYF----GTKY--SLPMSATFKGADGKDHYVQMGSY 317
            +   +      +     +++ +I       G  Y             +       +   
Sbjct: 227 LNEESKAYYEQVKAYLDDLDIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGG 286

Query: 318 GIGAMRVVAAVIESS--HDGKGIIWPDSVAP-----------------FKISLINIKAHD 358
           G         ++E        GI +  S+                     + ++ I    
Sbjct: 287 G-----RYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTIGDQ- 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   K+   L   G     D +  +I  Q   AD LG    +++G + + ++K+++
Sbjct: 341 --ADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDV 398

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           K+  TG  E + L+ ++ Y   
Sbjct: 399 KNMTTGESETIELDALVEYFKK 420


>gi|289432623|ref|YP_003462496.1| glycyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288946343|gb|ADC74040.1| glycyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 443

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 146/469 (31%), Gaps = 98/469 (20%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I   S   G     + + PLG +   NV          +R   + +    +  
Sbjct: 17  LARRRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMH 76

Query: 77  ADLWVESGRYDSYGKEM---------LRLADRNDKAMIYGP---THEEVMTDIFRSHI-- 122
             +W  SG    +   M          R  D  +          T       +F++ +  
Sbjct: 77  PRVWEASGHVAGFSDPMVDCKKCKMRWRPTDLAEPKCPACGGELTESRQFNLMFKTFMGP 136

Query: 123 ---------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                       + + LPF   QI   FR+E+     + RSREF
Sbjct: 137 VEEAASIVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTGNFIFRSREF 196

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
              +   F     G+  +  + +  Y L  +  LG+    +R          S E    A
Sbjct: 197 EQMELEYFVKP--GADDACLEEWTQYRLNWYKNLGMNPENLRLR-----AHRSDELAHYA 249

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G   V  +       +             +  + Q       + +  +E+  +     
Sbjct: 250 -KGCYDVEYNFPMGWSELEGI------ANRRDFDLTQHAKYSGKSLEYFDEETKEHFVPY 302

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
               + G+E   + +    Y+          D     + +                    
Sbjct: 303 VIEPSAGVERSTLAFLIDAYAEE-----PDKDEIRTVLHLH------------------- 338

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   ++AP+KI+++ + +  ++  D   KIYA L K    V +DD  + IG ++  
Sbjct: 339 -------PALAPYKIAVLPL-SKKEILSDYARKIYADLRKCWM-VAYDDS-QSIGRRYRR 388

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D +G P  V V  + + D  V ++ R +  +  + + E+    + + S
Sbjct: 389 QDEIGTPYCVTVDFQSLEDGMVTVRDRDSMAQIRVKVSELSYILAAKLS 437


>gi|205373424|ref|ZP_03226228.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 84

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   E +Y +L   G +V  DD  E+ G +F  +DL+G P++V VG K  S+  VE K 
Sbjct: 4   QKKLGEDLYNQLKDQGLEVLLDDRIERAGVKFNDSDLIGIPVRVTVG-KQASEGNVECKD 62

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R TG  +D+S+EE+ +Y +   
Sbjct: 63  RRTGESKDVSIEELSSYINQLL 84


>gi|207109770|ref|ZP_03243932.1| threonyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 145

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 298 MSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               F    +  +  V +    +G+     A++     G    +   VAP +I+LI I  
Sbjct: 1   FKLAFTNERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPINE 57

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              V      K+   L K    V   D  + +  +  +A+    P+ +++G++ +    +
Sbjct: 58  EHHVF---ALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEIL 114

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            I+ R    +  M L+E +N    +   
Sbjct: 115 SIRDREKQAQYKMPLKEFLNMVESKMQE 142


>gi|256810410|ref|YP_003127779.1| glycyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793610|gb|ACV24279.1| glycyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 577

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 87/551 (15%), Positives = 172/551 (31%), Gaps = 146/551 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESG----------- 84
            G   + PLG    +N+ +  RE+   + G  E+  PT+   ++   SG           
Sbjct: 30  AGFVDYGPLGCLLKNNIISKFREQYIVKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 89

Query: 85  --------RYDSYGKE----------------------------------------MLRL 96
                   R D   +E                                        M   
Sbjct: 90  CKNCLESFRADHLIEEFVDVDTEGKTLKELDELIKKYNVRCPKCGGELGEVKKFNLMFVT 149

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
           +      +     P   + +   FR   + +RN LPF   QI   +R+E+ PR GV+R R
Sbjct: 150 SIGPGGKRTGYMRPETAQGIFIQFRRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLR 209

Query: 154 EFLM-----------KDAYSFDL--------------TPEGSKHSYNKMFV--------- 179
           EF             K+   FDL                E  K     + +         
Sbjct: 210 EFTQAEIEYFVHPEKKEHEKFDLVKDEVVPLLPAERQMDENLKEDEKVIKISIGEAVEKG 269

Query: 180 -------SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFP 231
                  +Y     +  L++I +  +       L +E    A D  + +++  +      
Sbjct: 270 IIRHQTIAYFIALTKRFLEAIGIDKDKIRFRQHLPNEMAHYAIDCWDAEIYTERFGWIEC 329

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK------RVSARGIEVG 285
           +   +    D+ S ++      + +    +    + ++     K      +   + IE  
Sbjct: 330 VGIADRTDYDLRSHSAHSGVELSIFVELDEEREIETYEINLNYKVVGKIFKKDTKAIE-A 388

Query: 286 HIFYFGTKYSLPMSATFKGA-------DGKD---------------------HYVQMGSY 317
           +I     K         +         DGK+                         +   
Sbjct: 389 YINNLSEKEKEEFVKNIENNGKVIINIDGKEFEILKDYVEIKKVKKVIKGEKVIPHVIEP 448

Query: 318 GIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             G  R+   ++E S+  +     +    S+AP K  ++ +   D + +   ++I   L 
Sbjct: 449 SYGIDRITYCLLEHSYREEEDRVYLDLKPSIAPIKAYVLPLVNKDDMPK-IAKEINQMLR 507

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +      +DD G  IG ++  AD +G P  + V  + + D  V ++ R T  +  + ++E
Sbjct: 508 ESSIIAEYDDSGA-IGRRYMRADEIGVPFCITVDGQTLKDKTVTVRERNTREQIRVKIDE 566

Query: 434 VINYASHRFSN 444
           +++Y   +   
Sbjct: 567 LVDYLKEKLKE 577


>gi|297590826|ref|ZP_06949464.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|297575712|gb|EFH94428.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
          Length = 420

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 130/435 (29%), Gaps = 40/435 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP   K    +   + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIKTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  +G   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIYQSFGLKHLKLVINS--VGDMAS 171

Query: 208 -HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E+          V              N        ++   E        T  ++ E 
Sbjct: 172 RKEYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEES 231

Query: 267 LFDSLPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     +   GI          G  Y             +       +   G    
Sbjct: 232 KAYYEQVKAYLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGG---- 287

Query: 323 RVVAAVIESS--HDGKGIIWPDSVAPFK---------------ISLINIKAHDQVCRDAC 365
                ++E        GI +  S+                   + L  +   DQ  R   
Sbjct: 288 -RYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADR-YA 345

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L   G     D +  +I  Q   AD LG    +++G + + ++K+++K+  TG 
Sbjct: 346 VKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGE 405

Query: 426 REDMSLEEVINYASH 440
            E + L+ ++ Y   
Sbjct: 406 SETIELDALVEYFKK 420


>gi|85057389|ref|YP_456305.1| glycyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789494|gb|ABC65226.1| glycyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 452

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 144/480 (30%), Gaps = 138/480 (28%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    +N+     ++  +     + +    L ++ +W  SG  DS+      L 
Sbjct: 31  WDYGPLGSLLKNNIKKAWLQKFVQEQPNNVLLDGSILLNSAVWKASGHLDSFSD---PLT 87

Query: 98  DRND-----KAMIYGPTH-----------EEVMTDIFRSHIK------------------ 123
           +  D     +A     TH           E++   + ++ +                   
Sbjct: 88  ENQDNNKRFRADKLIETHDPQLDISGWSYEQMHDYLVKNQVLGTSNWTPIRPFNMLFQTR 147

Query: 124 -------------------------------SYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                                          + + LPF   QI   FR+E+ P   + R+
Sbjct: 148 QGVILKNSKPLYLRPETAQGIFIQFKNILKTTRKKLPFGVCQIGKVFRNEVTPGNFIFRT 207

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F                                        G  +H F  
Sbjct: 208 CEFEQMELEFFCQ-------------------------------------PGTETHWFNH 230

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  +       +   +  +N  F D    +                 +        
Sbjct: 231 W------KKLMYDFLIILGMNPQNLKFKDHKKEDLSHYSKQ--------TCDILFKFPWG 276

Query: 273 ENKRVSARGIEVGHIFYFGT-KYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIE 330
            ++     GI     F   T + +     T+     K      +    +G  R+  A + 
Sbjct: 277 FDELW---GIASRTNFDLKTHQKNSKKDLTYFDETTKQKILPYVIEPSLGIERLFFAFLI 333

Query: 331 SSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           +++            + +   +AP+K++++ +       +   ++I   L+K   DV +D
Sbjct: 334 NNYHENSTSNETRQILSFHPFLAPYKVAVLPLIKKKHSAK--AQEINQYLAKY-FDVCYD 390

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D++G P  + V  + ++ + + +++R T  ++   L EV  Y   + 
Sbjct: 391 ET-KSIGKRYRRQDMIGTPFCITVDDQTLTHNIITLRNRDTAQQQTFLLTEVKQYIQEKI 449


>gi|42519262|ref|NP_965192.1| histidyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|46396581|sp|P60916|SYH_LACJO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|41583550|gb|AAS09158.1| histidyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|329667228|gb|AEB93176.1| histidyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 428

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 147/437 (33%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    + + V +I R    R    E+  P+ ++ +++  S     D   K
Sbjct: 4   QRPKGTVDILPGESGSWEKVESIARNFFKRANYREIRTPSFENYEVFSRSSGETSDVVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     ++  PF+ Y I   FR E RP+ G 
Sbjct: 64  EMYDFNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFSVYYIDNTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +      M      +   LG+K+  +   S          
Sbjct: 122 -RQREFHQIGVESFGSDSPLADVETLMM---AHDLLAELGVKNYELHINSLGNAQVREAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMD---FPIPSENTDFDDIISLNSI 248
                    P+   LS +          ++  SKD  D    P   +  D+ D  S  + 
Sbjct: 178 HDALVNYFTPVKDQLSEDSQRRLSQNPLRILDSKDERDKKFLPNAPKIVDYLDDESRENF 237

Query: 249 VEQWTAPYAATSDVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                       +   +             + E         E       G +Y+     
Sbjct: 238 KTITDMLEQLGINYVMDDDLVRGLDYYTGIIFEFMVEDKNLWESATTILGGGRYNH---- 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---GKGIIWPDSVAPFKISLINIKAH 357
             +  DG +       +GIG  R++  + E + D    +GI            + NI A 
Sbjct: 294 LVEEFDGPETPAV--GFGIGEERLMLVLKEQNPDLFQEEGI---------DFFITNIGAG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       ++   L + G    +D   +++  QF  AD +     + +G+K + +  + 
Sbjct: 343 TEF---KAVEVARSLREQGFSAQYDVDQKKLKQQFRKADRVHATFVITLGAKELENGVLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SLE++
Sbjct: 400 IKRLSDGKTIDLSLEDI 416


>gi|4388929|pdb|1B76|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Atp
 gi|4388930|pdb|1B76|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Atp
 gi|4388931|pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Glycyl-Adenylate
 gi|4388932|pdb|1GGM|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Glycyl-Adenylate
          Length = 442

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 149/470 (31%), Gaps = 90/470 (19%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQS 76
           L  R G I Q S      +G+Y + PLG +  +N+      R    R     +    L  
Sbjct: 11  LCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTH 70

Query: 77  ADLWVESGRYDSYGKEM----------------LRLAD----RNDKA--MIYGPTHEEVM 114
             +   SG   ++   M                +   D    R  +       P   + +
Sbjct: 71  RLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGI 130

Query: 115 TDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
              F++ + +  R L F   QI   FR+E+ PR  + R REF   +   F          
Sbjct: 131 FVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFV--------- 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                        R G      R            E +        ++  S++ +     
Sbjct: 182 -------------RPGEDEYWHRY--------WVEERLKWWQ----EMGLSRENLVPYQQ 216

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              +      +   I+ ++         +     FD     K   A GI          +
Sbjct: 217 PPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGI---TARVLRNE 273

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSV 344
           +S    A      GK     +     G  R V A++  +   + +              +
Sbjct: 274 HSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQL 333

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQ 403
           AP K+++I +  +     +  +++ ARL  +G   V ++D G  IG  +   D +G P  
Sbjct: 334 APIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGN-IGKAYRRHDEVGTPFA 392

Query: 404 VIV----------GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           V V          G+  + D  V ++ R T  +  + ++E+  +   R  
Sbjct: 393 VTVDYDTIGQSKDGTTRLKD-TVTVRDRDTMEQIRLHVDELEGFLRERLR 441


>gi|323142308|ref|ZP_08077140.1| histidine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413192|gb|EFY04079.1| histidine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 419

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 144/437 (32%), Gaps = 48/437 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    +P    A   +   +R+   + G  E+  P  +  +L+        D 
Sbjct: 1   MLTTAPRGTKDIMPSDVNAWRYLEETMRKICAQYGYKEIRTPVFEHTELFQRGIGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR ++++   P +       +  H  S  +    FY I   FR + RP+ G
Sbjct: 61  VEKEMYTFTDRGNRSITLRPENTASAVRAYVEHKLSKDDAATKFYYIGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R REF      +  +T          + +  +++   LGLK + ++  S       P 
Sbjct: 120 --RLREFHQFGVEALGVTGPNVDAE---IILLAVQVLQSLGLKDLKLKINSVGCPKCRPQ 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             +    F         ++           P    D  +           +       + 
Sbjct: 175 HREKLQAFFKP---NFDELCKDCQGRFDRNPLRLLDCKNPHCHELGEGAPSLEECLCDEC 231

Query: 263 HNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT------------F 302
                             E      RG++      F  +Y+ P+ A              
Sbjct: 232 KEHFEGLKQLLTAAGVEYEVDHNLVRGLDYYTKTAFEIQYA-PLGAQSAVCGGGRYDGLV 290

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           +   G +    +G + +G  RV+ A+       K  + P+        ++  K  +    
Sbjct: 291 QEISGDEARPGIG-FAMGMERVLLAL------EKQNLLPEFDESIDAYVVCPKQEN---F 340

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               K    L + G  V +D  G  + SQ   A+       +I G   +S + V +++  
Sbjct: 341 ALAFKTAIELRRAGFKVEYDFNGRSMKSQMKQANKFQAKQVLIFGEDELSRNAVTVRNMA 400

Query: 423 TGIREDMSLEEVINYAS 439
           T  + ++++ ++I+Y +
Sbjct: 401 TSEQHEIAVNDIISYFN 417


>gi|225570967|ref|ZP_03779990.1| hypothetical protein CLOHYLEM_07071 [Clostridium hylemonae DSM
           15053]
 gi|225160429|gb|EEG73048.1| hypothetical protein CLOHYLEM_07071 [Clostridium hylemonae DSM
           15053]
          Length = 473

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 122/365 (33%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 165 MFKTFQGVTEDAKSVVYLRPETAQGIFVNFKNVQRTSRKKIPFGICQVGKSFRNEITPGN 224

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N      L     LGLK   +R           
Sbjct: 225 FTFRTREFEQMELEFF-CEPGTDLEWFNYWKKFCLNWLETLGLKDDEVR----------- 272

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                                    P E + + +  +    +  +               
Sbjct: 273 --------------------YRDHSPEELSHYSNATTDIEYLFPFGWGELWGVADRTNYD 312

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                   +                       + F     + +   +    +GA R+V A
Sbjct: 313 LTQHQNVSKQDM--------------------SYFDDEKKEKYIPYVIEPSLGADRMVLA 352

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + S++D + +          +  ++AP K+ ++ +        +  EK+YA+LS+   +
Sbjct: 353 FLCSAYDEEELEGGDMRTVLHFHPALAPIKVGVLPLSKK---LNEGAEKVYAQLSRK-YN 408

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V    +   D  V ++ R T  +E + +EE+ +Y 
Sbjct: 409 CEFDDRGN-IGKRYRRQDEIGTPFCVTYDFESEEDGAVTVRDRDTMEQERVKIEELESYF 467

Query: 439 SHRFS 443
           + +F 
Sbjct: 468 AKKFE 472


>gi|153952826|ref|YP_001393591.1| glycyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219853491|ref|YP_002470613.1| hypothetical protein CKR_0148 [Clostridium kluyveri NBRC 12016]
 gi|254781876|sp|B9DY74|SYG_CLOK1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|254781877|sp|A5N4L2|SYG_CLOK5 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|146345707|gb|EDK32243.1| GlyS [Clostridium kluyveri DSM 555]
 gi|219567215|dbj|BAH05199.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 463

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 126/360 (35%), Gaps = 61/360 (16%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDSKAEIYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQIGKAFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       + H+Y K +    +   +LG+K   +R        +L
Sbjct: 215 FTFRTREFEQMELEFFCEPGTDLEWHNYWKEYC--WKFLLKLGIKEENIRFRV-HEKEEL 271

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           SH     +D    +      + +    ++ TD+D     N   +         + V NE+
Sbjct: 272 SHYSNATSDI---EYLFPFGWGELWGIADRTDYDLTQHQNRSGKDM----TYLNPVTNER 324

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMR 323
                 E    + R +             L         +   G D    M         
Sbjct: 325 YIPYCIEPSVGADRAV-------------LAFLVDAYDEEELEGGDVRTVMH-------- 363

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                           +  ++APFK++++ +        +    +Y  L K   +V +DD
Sbjct: 364 ----------------FHPAIAPFKVAILPLSKK---LSEKALDVYNMLRK-DFNVDYDD 403

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G  IG ++   D +G P  + +    + +  V I+ R T  +  + ++E+ ++   +  
Sbjct: 404 AG-SIGKRYRREDEIGTPYCITIDFDTMDNDTVTIRDRDTMKQFRVKIDELKDFIKEKIQ 462


>gi|294946602|ref|XP_002785126.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239898583|gb|EER16922.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 106

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 12/95 (12%)

Query: 344 VAPFKISLINIKAH-----------DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
           VA  ++ ++ I                +  + C+ IY  L   G  V  DD   +  G +
Sbjct: 1   VAEVQVVIVPIPPKGAGAQWSTAELKDMIGEKCKSIYEDLEANGVRVVLDDREDKTPGYK 60

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           F   +L G PL++ VG+K +    V    R TG +
Sbjct: 61  FNHWELKGVPLRIEVGAKDLEKGVVTFVRRNTGRK 95


>gi|268319357|ref|YP_003293013.1| hypothetical protein FI9785_874 [Lactobacillus johnsonii FI9785]
 gi|262397732|emb|CAX66746.1| hisS [Lactobacillus johnsonii FI9785]
          Length = 428

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 147/437 (33%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    + + V +I R    R    E+  P+ ++ +++  S     D   K
Sbjct: 4   QRPKGTVDILPGESGSWEKVESIARNFFKRANYREIRTPSFENYEVFSRSSGETSDVVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     ++  PF+ Y I   FR E RP+ G 
Sbjct: 64  EMYDFNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFSVYYIDNTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +      M      +   LG+K+  +   S          
Sbjct: 122 -RQREFHQIGVESFGSDSPLADVETLMM---AHDLLAELGVKNYELHINSLGNAQVREAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMD---FPIPSENTDFDDIISLNSI 248
                    P+   LS +          ++  SKD  D    P   +  D+ D  S  + 
Sbjct: 178 HDALVNYFTPVKDQLSEDSQRRLSQNPLRILDSKDERDKKFLPNAPKIVDYLDDESRENF 237

Query: 249 VEQWTAPYAATSDVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                       +   +             + E         E       G +Y+     
Sbjct: 238 KIITDMLEQLGINYVMDDDLVRGLDYYTGIIFEFMVEDKNLWESATTILGGGRYNH---- 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---GKGIIWPDSVAPFKISLINIKAH 357
             +  DG +       +GIG  R++  + E + D    +GI            + NI A 
Sbjct: 294 LVEEFDGPETPAV--GFGIGEERLMLVLKEQNPDLFQEEGI---------DFFITNIGAG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       ++   L + G    +D   +++  QF  AD +     + +G+K + +  + 
Sbjct: 343 TEF---KAVEVARSLREQGFSAQYDVDQKKLKQQFRKADRVHATFVITLGAKELENGVLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SLE++
Sbjct: 400 IKRLSDGKTIDLSLEDI 416


>gi|302333304|gb|ADL23497.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 420

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 130/435 (29%), Gaps = 40/435 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP   K    +   + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  +G   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIYQSFGLKHLKLVINS--VGDMAS 171

Query: 208 -HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E+          V              N        ++   E        T  ++ E 
Sbjct: 172 RKEYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEES 231

Query: 267 LFDSLPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     +   GI          G  Y             +       +   G    
Sbjct: 232 KAYYEQVKAYLDDLGIAYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGG---- 287

Query: 323 RVVAAVIESS--HDGKGIIWPDSVAPFK---------------ISLINIKAHDQVCRDAC 365
                ++E        GI +  S+                   + L  +   DQ  R   
Sbjct: 288 -RYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADR-YA 345

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L   G     D +  +I  Q   AD LG    +++G + + ++K+++K+  TG 
Sbjct: 346 VKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGE 405

Query: 426 REDMSLEEVINYASH 440
            E + L+ ++ Y   
Sbjct: 406 SETIELDALVEYFKK 420


>gi|15924621|ref|NP_372155.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927211|ref|NP_374744.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|21283310|ref|NP_646398.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483876|ref|YP_041100.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486464|ref|YP_043685.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650512|ref|YP_186525.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|82751229|ref|YP_416970.1| histidyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|87160141|ref|YP_494282.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195442|ref|YP_500246.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148268111|ref|YP_001247054.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394179|ref|YP_001316854.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221745|ref|YP_001332567.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979949|ref|YP_001442208.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509856|ref|YP_001575515.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141100|ref|ZP_03565593.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317217|ref|ZP_04840430.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732287|ref|ZP_04866452.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|255006416|ref|ZP_05145017.2| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425755|ref|ZP_05602179.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428415|ref|ZP_05604813.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431053|ref|ZP_05607432.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433739|ref|ZP_05610097.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436654|ref|ZP_05612698.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257793704|ref|ZP_05642683.1| histidyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258410997|ref|ZP_05681277.1| histidyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258420202|ref|ZP_05683157.1| histidyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258424056|ref|ZP_05686938.1| histidyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|258438204|ref|ZP_05689488.1| histidyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443667|ref|ZP_05692006.1| histidyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258446874|ref|ZP_05695028.1| histidyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448788|ref|ZP_05696900.1| histidyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258450543|ref|ZP_05698605.1| histidyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258453606|ref|ZP_05701584.1| histidyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262048624|ref|ZP_06021507.1| histidyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262051281|ref|ZP_06023505.1| histidyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|269203256|ref|YP_003282525.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893135|ref|ZP_06301369.1| histidyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904211|ref|ZP_06312099.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282906037|ref|ZP_06313892.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908950|ref|ZP_06316768.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911267|ref|ZP_06319069.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914436|ref|ZP_06322222.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282916899|ref|ZP_06324657.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282919405|ref|ZP_06327140.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920180|ref|ZP_06327905.1| histidyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924729|ref|ZP_06332397.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282928266|ref|ZP_06335871.1| histidyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283770705|ref|ZP_06343597.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283958391|ref|ZP_06375842.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024687|ref|ZP_06379085.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503509|ref|ZP_06667356.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510527|ref|ZP_06669233.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293531068|ref|ZP_06671750.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848660|ref|ZP_06789406.1| histidyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295406752|ref|ZP_06816557.1| histidyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428206|ref|ZP_06820838.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275916|ref|ZP_06858423.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207649|ref|ZP_06924084.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245665|ref|ZP_06929530.1| histidyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|300911731|ref|ZP_07129174.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380772|ref|ZP_07363440.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|46397739|sp|P60909|SYH_STAAM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397740|sp|P60910|SYH_STAAN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397741|sp|P60911|SYH_STAAU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|48474731|sp|P60912|SYH_STAAW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56749382|sp|Q6G8T8|SYH_STAAS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56749411|sp|Q6GG72|SYH_STAAR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71153563|sp|Q5HFD2|SYH_STAAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123291784|sp|Q2FXU4|SYH_STAA8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123722375|sp|Q2FG96|SYH_STAA3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123740966|sp|Q2YT99|SYH_STAAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228618|sp|A7X345|SYH_STAA1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|172048922|sp|A6QHH3|SYH_STAAE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082313|sp|A6U299|SYH_STAA2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082314|sp|A5ITF5|SYH_STAA9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082315|sp|A8Z2F8|SYH_STAAT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2580436|dbj|BAA23141.1| histidyl-tRNA synthetase [Staphylococcus aureus]
 gi|13701429|dbj|BAB42723.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14247403|dbj|BAB57793.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204750|dbj|BAB95446.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49242005|emb|CAG40702.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244907|emb|CAG43368.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284698|gb|AAW36792.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|82656760|emb|CAI81189.1| histidyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|87126115|gb|ABD20629.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203000|gb|ABD30810.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|147741180|gb|ABQ49478.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946631|gb|ABR52567.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374545|dbj|BAF67805.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156722084|dbj|BAF78501.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368665|gb|ABX29636.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724076|gb|EES92805.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257271449|gb|EEV03595.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275256|gb|EEV06743.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278256|gb|EEV08898.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281832|gb|EEV11969.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284005|gb|EEV14128.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257787676|gb|EEV26016.1| histidyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257840147|gb|EEV64611.1| histidyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257843913|gb|EEV68307.1| histidyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257845677|gb|EEV69709.1| histidyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257848248|gb|EEV72239.1| histidyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851073|gb|EEV75016.1| histidyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257854449|gb|EEV77398.1| histidyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858066|gb|EEV80955.1| histidyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257861701|gb|EEV84500.1| histidyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257864337|gb|EEV87087.1| histidyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|259160918|gb|EEW45938.1| histidyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|259163271|gb|EEW47830.1| histidyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262075546|gb|ACY11519.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941116|emb|CBI49502.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313564|gb|EFB43959.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317215|gb|EFB47589.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282319386|gb|EFB49738.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282321617|gb|EFB51942.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282324962|gb|EFB55272.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327214|gb|EFB57509.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331329|gb|EFB60843.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590073|gb|EFB95155.1| histidyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594528|gb|EFB99513.1| histidyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595829|gb|EFC00793.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764453|gb|EFC04579.1| histidyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283460852|gb|EFC07942.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283470907|emb|CAQ50118.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790540|gb|EFC29357.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817313|gb|ADC37800.1| Histidyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290920336|gb|EFD97402.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095175|gb|EFE25440.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466891|gb|EFF09411.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824686|gb|EFG41109.1| histidyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968499|gb|EFG44523.1| histidyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295128564|gb|EFG58198.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887666|gb|EFH26564.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177316|gb|EFH36568.1| histidyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|298694910|gb|ADI98132.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300885977|gb|EFK81179.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751459|gb|ADL65636.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340709|gb|EFM06641.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312437902|gb|ADQ76973.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830017|emb|CBX34859.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315129915|gb|EFT85905.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195533|gb|EFU25920.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198669|gb|EFU28997.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140482|gb|EFW32336.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144021|gb|EFW35790.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323440816|gb|EGA98525.1| histidyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442835|gb|EGB00460.1| histidyl-tRNA synthetase [Staphylococcus aureus O46]
 gi|329314305|gb|AEB88718.1| Histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727688|gb|EGG64144.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
 gi|329728443|gb|EGG64880.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 420

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 130/435 (29%), Gaps = 40/435 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP   K    +   + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ D+++   P     +   +  H ++   N P   Y     FR E + + 
Sbjct: 60  VQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK- 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +              M    + I+   GLK + +   S  +G   S
Sbjct: 119 --GRYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIYQSFGLKHLKLVINS--VGDMAS 171

Query: 208 -HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E+          V              N        ++   E        T  ++ E 
Sbjct: 172 RKEYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEES 231

Query: 267 LFDSLPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     +   GI          G  Y             +       +   G    
Sbjct: 232 KAYYEQVKAYLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGG---- 287

Query: 323 RVVAAVIESS--HDGKGIIWPDSVAPFK---------------ISLINIKAHDQVCRDAC 365
                ++E        GI +  S+                   + L  +   DQ  R   
Sbjct: 288 -RYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADR-YA 345

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L   G     D +  +I  Q   AD LG    +++G + + ++K+++K+  TG 
Sbjct: 346 VKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGE 405

Query: 426 REDMSLEEVINYASH 440
            E + L+ ++ Y   
Sbjct: 406 SETIELDALVEYFKK 420


>gi|325672605|ref|ZP_08152301.1| histidine--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325556482|gb|EGD26148.1| histidine--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 426

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 133/436 (30%), Gaps = 43/436 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V   +       G   + +P  +   L+        D   
Sbjct: 9   FSAPKGVPDYVPPQSAEFVAVRDGLTRAARLAGYGHIELPIFEDTGLFARGVGESTDVVS 68

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR ++++   P     +      H      LP         FR E RP+ G  
Sbjct: 69  KEMYTFADRGERSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLSYAGPFFRYE-RPQAG-- 125

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 126 RYRQLQQVGVEAIGVDDPALDAEVIAIADA---GFRSLGLDGFRLEITSLGDDTCRPQYR 182

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +   EF+   D  E     ++      +  +     ++ +   ++    +  A       
Sbjct: 183 ERLQEFLFGLDLDEDTRRRAEINPLRVLDDKRPHVREMTADAPLMLDHLSESAKAHFDEV 242

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     V+ R             E  H    G +  +     + G  A      
Sbjct: 243 LAHLDALGVPYVVNPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQP 301

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    YG+G  R + A+  E    G     P     F + L          +    KI  
Sbjct: 302 LSGIGYGLGVDRTILALAAEGKSAGN----PARCEVFGVPL------GAAAKTEMVKIAH 351

Query: 371 RLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            L   G      + D G + GS    AD  G  + +++G + ++   + +K    G +  
Sbjct: 352 ALRAAGIRADMVYGDRGIK-GSM-KAADRSGARIALVLGDEDLAAGTIAVKDLSNGEQTS 409

Query: 429 MSLEEVINYASHRFSN 444
           +++E V+       ++
Sbjct: 410 VAMEGVVAQIGSILAD 425


>gi|323702180|ref|ZP_08113847.1| histidyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532867|gb|EGB22739.1| histidyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 419

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 143/433 (33%), Gaps = 39/433 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP   +    +  + R+     G  E+  P  +  +L+        D 
Sbjct: 1   MLTTRPRGTNDILPGEVEKWQYLEELARQVCREYGYSEIRTPIFEHTELFARGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR D+++   P     +   +  +       P   + I   FR + RP+ G
Sbjct: 61  VEKEMYTFTDRGDRSITLRPEGTAAVVRAYLENKLYALPQPIKLFYIGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F       F             M    + I+HR+GL ++ +   S       P+
Sbjct: 120 --RFRQFHQFGVEVFGSNSPAVDAEVIAM---AMDIYHRIGLTNLELHINSVGCPQCRPV 174

Query: 203 GGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 E+    LA+                +  ++    +I            P     
Sbjct: 175 LRQKLQEYFRPQLAELCPNCQGRFDRNPLRILDCKSEKCQEIGRHAPTTLDVLCPECQAH 234

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSAT-FKGADGKDHYVQMGS 316
               +   D++     V  R +  G  +Y  T +   +  + A    G  G+ + +    
Sbjct: 235 FELVKGYLDAVGVKYIVDNRLV-RGLDYYTNTAFEIMTRDIGAQSSIGGGGRYNGLIEAC 293

Query: 317 YGIGAMRVVAAV----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            G  A  +  A+    I  + + +GI +P  ++      +               +  +L
Sbjct: 294 GGSAAPGIGFALGLERILLTAERQGITFP--ISRGPAVFVATVGAGAETESFA--LVQKL 349

Query: 373 SKVGCDVFWDD--MGEQIGSQFA---VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            + G     D      +   ++A    A L      +I+G + +S     +++   G +E
Sbjct: 350 RRHGIAADKDYLGRSLKAQMKYAGKLDARL-----VIILGEEELSRGVAVVRNMQAGSQE 404

Query: 428 DMSLEEVINYASH 440
           ++ L ++I+Y   
Sbjct: 405 EVPLADIISYVKE 417


>gi|315658099|ref|ZP_07910971.1| histidine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315496428|gb|EFU84751.1| histidine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 419

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 132/437 (30%), Gaps = 46/437 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP        +   + +        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPEETAKWRYIENKLAQLMKLYNYQEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ ++++   P   E    + RS+I++        P   Y     FR E +
Sbjct: 60  VQKEMYTFKDKGNRSITLRP---EGTAAVVRSYIENKMQGLPNQPVKLYYNGPMFRYERK 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F      +              M    ++I+   GLK + +   S  IG 
Sbjct: 117 QK---GRYRQFTQFGVEAIGAEDPSIDAEVLAMV---MQIYQSFGLKHLKLVINS--IGD 168

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             S +     +  E  V   +  +D       +            +      A  +    
Sbjct: 169 AESRK-----EYNEALVKHFEPVIDDFCSDCQSRLHTNPMRILDCKVDRDKKAIKTAPKI 223

Query: 265 EKLFDSLPENKRVSARG-IEVGHIFYF-------GTKY--SLPMSATFKGADGKDHYVQM 314
               +   +    + +  ++  +I Y        G  Y             +       +
Sbjct: 224 TDYLNDESKAYYEAVKQYLDDLNIPYVEDSNLVRGLDYYTHTAFELMMDNPNYDGAITTL 283

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---------- 364
              G     ++  +   +  G G           +   NI   +    D           
Sbjct: 284 -CGGGRYNGLLQLLDGPNQTGIGFALSIERLLLALEEENIDIVENETLDLFIVTMGEAAN 342

Query: 365 --CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               K+     K G     D +  +I  Q   AD L     +++G + + +  VE+KH  
Sbjct: 343 HFAVKLLNDCRKNGIIADKDYLNRKIKGQMKQADRLNATYTIVIGDQELDNQIVEVKHME 402

Query: 423 TGIREDMSLEEVINYAS 439
           +G  E +  E +++Y  
Sbjct: 403 SGNSETVKFENLLSYFK 419


>gi|255527652|ref|ZP_05394512.1| glycyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296186917|ref|ZP_06855318.1| glycyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255508665|gb|EET85045.1| glycyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048631|gb|EFG88064.1| glycyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 463

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 116/360 (32%), Gaps = 61/360 (16%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D   +  +   T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTYQGVTEDSKSEIHLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       + HSY K           LG++   +R        +L
Sbjct: 215 FTFRTREFEQMELEFFCKPGTDLEWHSYWK--EQCWNFLLNLGIEEKNIRF-RDHDKEEL 271

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           SH     +D    +      + +    ++ TD+D     N   +  +     T + +   
Sbjct: 272 SHYSNATSDI---EYLFPFGWGELWGVADRTDYDLTQHQNHSGKDMSYLDPVTHEKYIPY 328

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMR 323
             +      R                   L         +   G D    M         
Sbjct: 329 CIEPSVGADRA-----------------VLAFLVDAYDEEELEGGDSRTVMH-------- 363

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                           +  ++AP K +++ +        +  E++Y  L K   +V +D+
Sbjct: 364 ----------------FHPAIAPVKAAILPLTKK---LSEKAEEVYDELRK-DFNVEYDE 403

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G  IG ++   D  G P  + +    + D+ V ++ R T  +  M ++E+  +   +  
Sbjct: 404 AG-SIGKRYRRQDEAGTPYCITIDFDTLEDNTVTVRDRDTMDQFRMKVDELKKFIKEKME 462


>gi|207744374|ref|YP_002260766.1| prolyl-trna synthetase (partial sequence ( central part) protein
           [Ralstonia solanacearum IPO1609]
 gi|206595779|emb|CAQ62706.1| prolyl-trna synthetase (partial sequence ( central part) protein
           [Ralstonia solanacearum IPO1609]
          Length = 328

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/121 (39%), Positives = 63/121 (52%), Gaps = 6/121 (4%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEV 284
             DF   +   DF        +      P A  +D+ N    D  P+ K      RGIEV
Sbjct: 212 MSDFVCGANEEDFH----YTGVNWGRDLPEAEVADLRNVVEGDPSPDGKGSLAICRGIEV 267

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GH+F  GT+YS  MSATF   +GK   + MG YGIG  R++ A IE ++D +GIIWP S+
Sbjct: 268 GHVFMLGTRYSESMSATFLDENGKTQPMVMGCYGIGITRILGAAIEQNYDARGIIWPVSI 327

Query: 345 A 345
           A
Sbjct: 328 A 328



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 52/78 (66%)

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G+MR REF MKDAYSFD   EG K SY KMF +Y RIF R GL    + A++G IGG  
Sbjct: 1   MGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDAYTRIFQRFGLAFRAVAADNGAIGGSG 60

Query: 207 SHEFIVLADTGETQVFCS 224
           SHEF V+A+TGE  +  S
Sbjct: 61  SHEFHVIAETGEDAIVYS 78


>gi|73748597|ref|YP_307836.1| glycyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|73660313|emb|CAI82920.1| glycyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
          Length = 433

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 146/469 (31%), Gaps = 98/469 (20%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I   S   G     + + PLG +   NV          +R   + +    +  
Sbjct: 7   LARRRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMH 66

Query: 77  ADLWVESGRYDSYGKEM---------LRLADRNDKAMIYGP---THEEVMTDIFRSHI-- 122
             +W  SG    +   M          R  D  +          T       +F++ +  
Sbjct: 67  PRVWEASGHVAGFSDPMVDCKKCKMRWRPTDLAEPKCPACGGELTESRQFNLMFKTFMGP 126

Query: 123 ---------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                       + + LPF   QI   FR+E+     + RSREF
Sbjct: 127 VEEAASIVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTGNFIFRSREF 186

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
              +   F     G+  +  + +  Y L  +  LG+    +R          S E    A
Sbjct: 187 EQMELEYFVKP--GADDACLEEWTQYRLNWYKNLGMNPENLRLR-----AHRSDELAHYA 239

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G   V  +       +             +  + Q       + +  +E+  +     
Sbjct: 240 -KGCYDVEYNFPMGWSELEGI------ANRRDFDLTQHAKYSGKSLEYFDEETKEHFVPY 292

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
               + G+E   + +    Y+          D     + +                    
Sbjct: 293 VIEPSAGVERSTLAFLIDAYAEE-----PDKDEIRTVLHLH------------------- 328

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   ++AP+KI+++ + +  ++  D   KIYA L K    V +DD  + IG ++  
Sbjct: 329 -------PALAPYKIAVLPL-SKKEILSDYARKIYADLRKCWM-VAYDDS-QSIGRRYRR 378

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D +G P  V V  + + D  V ++ R +  +  + + E+    + + S
Sbjct: 379 QDEIGTPYCVTVDFQSLEDGMVTVRDRDSMAQIRVKVSELSYILAAKLS 427


>gi|325689257|gb|EGD31263.1| histidine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 426

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 139/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKVAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A      D  
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAG---ANDRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD       + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADSFKAKTLITLGESEVESGQVTVKNNYNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|57234403|ref|YP_181519.1| glycyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|57224851|gb|AAW39908.1| glycyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 433

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 81/478 (16%), Positives = 152/478 (31%), Gaps = 116/478 (24%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I   S   G     + + PLG +   NV          +R   + +    +  
Sbjct: 7   LARRRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMH 66

Query: 77  ADLWVESGRYDSYGKEM---------LRLADRNDKAMIYGP---THEEVMTDIFRSHI-- 122
             +W  SG    +   M          R  D  +          T       +F++ +  
Sbjct: 67  PRVWEASGHVAGFSDPMVDCKNCKMRWRPTDLAEPKCPACGGELTESRQFNLMFKTFMGP 126

Query: 123 ---------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                       + + LPF   QI   FR+E+     + RSREF
Sbjct: 127 VEEAANIVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTGNFIFRSREF 186

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSY-LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
              +   F     G+  +  + +  Y L  +  LG+    +R          S E    A
Sbjct: 187 EQMELEYFVKP--GADDACLEEWTQYRLNWYKNLGMNPENLRLR-----AHRSDELAHYA 239

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                            +   +   ++    + N + FD    +
Sbjct: 240 ----------------------------KGCYDVEYNFPMGWSELEGIANRRDFDLTQHS 271

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
           K  S + +E                  +   + K+H+   +     G  R   A +  ++
Sbjct: 272 K-YSGKALE------------------YFDEETKEHFIPYVIEPSAGVERSTLAFLIDAY 312

Query: 334 DGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +         +    ++AP+KI+++ + +  ++  D   KIYA L K    V +DD  
Sbjct: 313 AEEPDKDEIRTVLHLHPALAPYKIAVLPL-SKKEILSDYARKIYADLRKCWM-VAYDDS- 369

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + IG ++   D +G P  V V  + + D  V I+ R +  +  + + E+    + + S
Sbjct: 370 QSIGRRYRRQDEIGTPYCVTVDFQSLEDGMVTIRDRDSMDQIRVKVSELSCILAAKLS 427


>gi|291296240|ref|YP_003507638.1| glycyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290471199|gb|ADD28618.1| glycyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 508

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/377 (17%), Positives = 122/377 (32%), Gaps = 63/377 (16%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRF 147
           M +         D      P   + +   F++ + +  R LPF   QI   FR+E+ PR 
Sbjct: 170 MFKTQIGPVADEDSYGYLRPETAQGIFINFKNVLDATSRRLPFGVAQIGKAFRNEITPRN 229

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P   +  + +   +                           
Sbjct: 230 FIFRVREFEQMEIEYF-VKPGTDEEWHQRWLEA--------------------------- 261

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                     E Q    +      +P E+       + + +    T  +     + N   
Sbjct: 262 -----RLAWWEAQGIPREQIRVLDVPKEDLSHYSKRTFDLMYNFPTLGFEEIEGIANRSD 316

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +D     K  +   I+           S    A       +     +     G  R V A
Sbjct: 317 YDLGSHTKGQAELKIQA---RVLENHDSTAKLAVQDPETKEWFVPFVIEPSAGVDRGVLA 373

Query: 328 VIESSHD----GKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC- 377
           V+  ++       G     +     +AP K+++I +  + +       ++ A L  +G  
Sbjct: 374 VLSQAYTREKLENGEERIVLKLKPHLAPIKVAVIPLAKNKEEITSYARRLKADLQALGFG 433

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIV----------GSKFVSDSKVEIKHRLTGIRE 427
            V ++D G  IG  +   D +G P  V V          GS  + D  V ++ R T  +E
Sbjct: 434 RVLYEDTGN-IGKAYRRHDEVGTPFCVTVDYDTIGKSQDGSTALQD-TVTVRDRDTMQQE 491

Query: 428 DMSLEEVINYASHRFSN 444
            ++++E+  Y   R  +
Sbjct: 492 RVAVKELPQYLLERLKS 508


>gi|297664841|ref|XP_002810829.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 139

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYAR 371
           MG YG+G  R++AA IE       + WP  +AP++  LI  K    ++   +   ++Y  
Sbjct: 1   MGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELIGQLYDH 60

Query: 372 LSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGI 425
           +++       +V  DD     IG++   A+  G+P  +I G + + D    E+  + TG 
Sbjct: 61  ITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQNTGE 120

Query: 426 REDMSLEEVINYASH 440
              ++ + V++  + 
Sbjct: 121 VVFLTKDGVMDLLTQ 135


>gi|167629917|ref|YP_001680416.1| histidyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|229558684|sp|B0TF88|SYH_HELMI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|167592657|gb|ABZ84405.1| histidyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 425

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 48/443 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP   +    +   IR      G  E+  P  + ++++        D 
Sbjct: 1   MLISAPRGTKDILPGQSRHWQTLEDTIRRLCREYGYEEIRTPIFEHSEVFHRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KE     DR  + +   P            H     +LP   Y     FR     R  
Sbjct: 61  VQKETYDFQDRGGRDLTLRPEGTAPTVRALLEHKLYAGSLPVKLYYTGPMFRF---GRPQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
            +R R+F       F  +          M    +  + RLGLK++ +   S       P 
Sbjct: 118 TVRLRQFHQFGIEVFGASGPRVDAEVIAM---AMDFYSRLGLKNLELLLNSIGCPACRPA 174

Query: 203 GGDLSHEFIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             +  H+F+     +  E             +  +N    ++               A  
Sbjct: 175 YREALHQFLRPKGGELCEDCKKRMDRNPLRVLDCKNQRCQELSQGAPTTVNHLCDDCANH 234

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSAT-FKGADGKDHYVQM-- 314
               ++L D+      +  R +  G  +Y  T +   S  + A    G  G+  ++    
Sbjct: 235 FADVKELLDAAGVAYSLDDRLV-RGLDYYTKTAFEIVSRDIGAQSSIGGGGRYDHLVEAL 293

Query: 315 -------GSYGIGAMRVV-----AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                    +G+G  RV+       ++++    +  ++             I    +  +
Sbjct: 294 GGPPVPGIGFGLGLERVLLTMKNQGLLDADSREQRDLF-------------IALAGEGTQ 340

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                +  +L + G  V  D +   + +Q   AD    P  VIVG   + + K+ ++   
Sbjct: 341 PVAFGLAQKLRQRGVAVEMDYLERSLKAQMKTADRFRVPYVVIVGEGELKEGKLTLRTMA 400

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           TG ++ + L E   Y  + F+N 
Sbjct: 401 TGEQQQIPLGEAAEYLDNLFANR 423


>gi|290581366|ref|YP_003485758.1| histidyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254998265|dbj|BAH88866.1| histidyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 429

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 154/453 (33%), Gaps = 66/453 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQETVKWQYVENVARKTFKKYHYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   + I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVFYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F             M  +Y  +F+ LG+K + +   S       
Sbjct: 120 AG--RLREFHQLGVECFGSNNPAIDAETIAM--AYQ-LFNELGIKDVTLHLNSLGNKESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +  +S 
Sbjct: 175 KAYRQALIDYLIPMKDKLSKDSQRRLEENPLRVLDSKEKEDKEAVENAPSILDYLDDDSQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGAD 306
           V                ++ D          RG++     IF F T+          G  
Sbjct: 235 VHFQGVCDML-------EVLDIPYVIDTNMVRGLDYYNHTIFEFITQVDKSELTLCAG-- 285

Query: 307 GKDHYVQMG---------SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           G+   +             +G+G  R++  +     D + I  P   +   + +  + A 
Sbjct: 286 GRYDSLVEYFGGPATAGFGFGLGLERLLLVI-----DKQKINLPIDNS-LDVYIAVLGA- 338

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    ++   + K G     D +G +I +QF  AD+    L + +G   V   +V 
Sbjct: 339 --AANSTALELIQAIRKQGFSAERDYLGRKIKAQFKSADVFKTKLIMTLGESEVETGQVA 396

Query: 418 IKHRLTGIREDMSLEEV-INYAS--HRFSNNRP 447
           +K+  T     +S EE+  ++AS   +  ++RP
Sbjct: 397 VKNNFTRQEIAVSFEEIKTDFASVFKQLGSDRP 429


>gi|203287820|ref|YP_002222835.1| glycyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|201085040|gb|ACH94614.1| glycyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 445

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/483 (15%), Positives = 152/483 (31%), Gaps = 109/483 (22%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G++ + PLG +   N+     +         + +    L  
Sbjct: 13  LAKRRGFVFQSSEVYGGLSGVWDYGPLGVEIKKNIQEEWWKSMVYFHENVVGLDSAILMR 72

Query: 77  ADLWVESGRYDSYGK---------------------------------------EMLRLA 97
            ++W  SG  DS+ +                                        M +  
Sbjct: 73  PEVWKASGHVDSFLELLVDCKNCKNRFRTDFIDLSKGCPNCGSIGTFTTPRSFNLMFKTN 132

Query: 98  ----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRS 152
               + +   +   P   + +   FR+ + + R  +PF   Q+   FR+E+  +  + R 
Sbjct: 133 IGAVEDSSSEIYLRPETAQGIFVNFRNVLDTTRLKVPFGIAQVGKAFRNEIIAKNFIFRV 192

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P      Y       +  F    ++++ ++A++         E   
Sbjct: 193 CEFEQMEMQFF-VHPSQMDDWYCYWREKRMNFF----IETLGIKADNLRFQKHNDDELAH 247

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A                                 I   +   +     +HN   +D   
Sbjct: 248 YAKAAVD----------------------------IEYNFPFGFQEIEGIHNRGNYDLNQ 279

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV----AAV 328
             K      +   H    G KY                YV   S G+    ++    A  
Sbjct: 280 HAKFCGKSKLFEYHDLITGDKYIP--------------YVIETSLGLTRSVLMTLCDAYA 325

Query: 329 IESSHDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            E    G     +     +AP+K++++ +   D    +   K++ + S     +F+D+  
Sbjct: 326 CEELEGGDKRIVLHLHPKIAPYKVAILPLVKKD-GLPELARKVFMQFSD-DFYMFYDE-N 382

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             IG ++   D +G P  V +    + +  + ++ R T  +  +S++++ +Y      N 
Sbjct: 383 GTIGKRYRRQDEIGTPYCVTIDYDTIENRTITLRDRDTMTQTRISIDDLYSYVKTGILNY 442

Query: 446 RPV 448
           + V
Sbjct: 443 KGV 445


>gi|203284284|ref|YP_002222024.1| glycyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|201083727|gb|ACH93318.1| glycyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 445

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/483 (15%), Positives = 152/483 (31%), Gaps = 109/483 (22%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G++ + PLG +   N+     +         + +    L  
Sbjct: 13  LAKRRGFVFQSSEVYGGLSGVWDYGPLGVEIKKNIQEEWWKSMVYFHENVVGLDSAILMR 72

Query: 77  ADLWVESGRYDSYGK---------------------------------------EMLRLA 97
            ++W  SG  DS+ +                                        M +  
Sbjct: 73  PEVWKASGHVDSFLELLVDCRNCKNRFRTDFIDLSKGCPNCGSIGTFTTPRSFNLMFKTN 132

Query: 98  ----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRS 152
               + +   +   P   + +   FR+ + + R  +PF   Q+   FR+E+  +  + R 
Sbjct: 133 IGAVEDSSSEIYLRPETAQGIFVNFRNVLDTTRLKVPFGIAQVGKAFRNEIIAKNFIFRV 192

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF   +   F + P      Y       +  F    ++++ ++A++         E   
Sbjct: 193 CEFEQMEMQFF-VHPSQMDDWYCYWREKRMNFF----IETLGIKADNLRFQKHNDDELAH 247

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A                                 I   +   +     +HN   +D   
Sbjct: 248 YAKAAVD----------------------------IEYNFPFGFQEIEGIHNRGNYDLNQ 279

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV----AAV 328
             K      +   H    G KY                YV   S G+    ++    A  
Sbjct: 280 HAKFCGKSKLFEYHDLITGDKYIP--------------YVIETSLGLTRSVLMTLCDAYA 325

Query: 329 IESSHDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            E    G     +     +AP+K++++ +   D    +   K++ + S     +F+D+  
Sbjct: 326 CEELEGGDKRIVLHLHPKIAPYKVAILPLVKKD-GLPELARKVFMQFSD-DFYMFYDE-N 382

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             IG ++   D +G P  V +    + +  + ++ R T  +  +S++++ +Y      N 
Sbjct: 383 GTIGKRYRRQDEIGTPYCVTIDYDTIENRTITLRDRDTMTQTRISIDDLYSYVKTGILNY 442

Query: 446 RPV 448
           + V
Sbjct: 443 KGV 445


>gi|313889655|ref|ZP_07823298.1| serine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121952|gb|EFR45048.1| serine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 425

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHAKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYDELEKMTTNAENILQKLELPYRVIALCTGDMGFSAAKTYDVEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|306830557|ref|ZP_07463724.1| serine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304427275|gb|EFM30380.1| serine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 425

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADSD 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPETSYDELEKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|320547963|ref|ZP_08042245.1| serine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320447387|gb|EFW88148.1| serine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 425

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADSD 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPETSYDELEKMVVNAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|315142788|gb|ADT80969.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  + HYV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKHYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|332522516|ref|ZP_08398768.1| serine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332313780|gb|EGJ26765.1| serine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 425

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD N
Sbjct: 165 FYKNLGARLERALYNFMLDEHAKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFELADTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYDELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDVEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|227890124|ref|ZP_04007929.1| histidyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227849299|gb|EEJ59385.1| histidyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 428

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 147/437 (33%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    + + V +I R    R    E+  P+ ++ +++  S     D   K
Sbjct: 4   QRPKGTVDILPGESGSWEKVESIARNFFKRANYREIRTPSFENYEVFSRSSGETSDVVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     ++  PF+ Y I   FR E RP+ G 
Sbjct: 64  EMYDFNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFSVYYIDNTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +      M      +   LG+K+  +   S          
Sbjct: 122 -RQREFHQIGVESFGSDSPLADVETLMM---AHDLLAELGVKNYELHINSLGNAQVREAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMD---FPIPSENTDFDDIISLNSI 248
                    P+   LS +          ++  SKD  D    P   +  D+ D  S  S 
Sbjct: 178 HDALVNYFTPVKDQLSEDSQRRLSQNPLRILDSKDERDKKFLPNAPKIVDYLDDESRKSF 237

Query: 249 VEQWTAPYAATSDVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                       +   +             + E         E       G +Y+     
Sbjct: 238 KTITDMLEQLGINYVMDDDLVRGLDYYTGIIFEFMVEDKNLWESATTILGGGRYNH---- 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---GKGIIWPDSVAPFKISLINIKAH 357
             +  DG +       +GIG  R++  + E + D    +GI            + NI A 
Sbjct: 294 LVEEFDGPETPAV--GFGIGEERLMLVLKEQNPDLFQEEGI---------DFFITNIGAG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       ++   L + G    +D   +++  QF  AD +     + +G+K + +  + 
Sbjct: 343 TEF---KAVEVARSLREQGFSAQYDVDQKKLKQQFRKADRVHATFVITLGAKELENGVLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SLE++
Sbjct: 400 IKRLSDGKIIDLSLEDI 416


>gi|325977535|ref|YP_004287251.1| seryl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177463|emb|CBZ47507.1| serS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 425

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADSD 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPETSYDELEKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|42525539|ref|NP_970637.1| glycyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|59798570|sp|Q73RR5|SYG_TREDE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|41815550|gb|AAS10518.1| glycyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 451

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/490 (14%), Positives = 151/490 (30%), Gaps = 123/490 (25%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +  +NV+    +E  +     + +    L  
Sbjct: 14  LCKRRGFVFQSSEIYGGQNGAWDYGPLGIELKNNVSRAWWKEMTQLHDNIVGLDAAILMH 73

Query: 77  ADLWVESGRYDSYGK-----------------------------------------EMLR 95
              W  SG  +++                                            M +
Sbjct: 74  PRTWEASGHVENFTDPLVDCKKCKSRFRADHLPPENLEKRVCPDCGGELTDTRKFNLMFK 133

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
                 D N   +   P   + +   +++ I+S R  +PF   QI   FR+E+  +  + 
Sbjct: 134 THIGPTDDNSSVIYLRPETAQGIYVNYKNIIQSNRMKIPFGIAQIGKAFRNEIVTKNFIF 193

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+ EF   +   F + P      ++         + + G+++  ++              
Sbjct: 194 RTCEFEQMEMQFF-VKPGTDDEWFDYWKKQRWAFYEKYGVRTNKLQ-------------- 238

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                 G+ ++                          I  ++   +     VHN   +D 
Sbjct: 239 --WHQHGKDELA-----------------HYAKDAYDIEYEFPMGFKELEGVHNRTNYDL 279

Query: 271 LPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                                T+YS   M    +    + +   +     G  R V   I
Sbjct: 280 TRH------------------TEYSGKDMQYIDQDNGNEKYIPYIIETSAGLTRNVLMFI 321

Query: 330 ESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             ++D +              + +  ++AP  ++++ +   D +  +  E+I   L +  
Sbjct: 322 CDAYDEEKVADKGNDDDWRTVLRFHPNIAPITVAVLPLMKKDGLA-ELAEEIRNELKEE- 379

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +D  G  IG ++   D +G P  V V      D+ V ++ R +  +  +   E+I+
Sbjct: 380 FKTDYDQSGA-IGKRYRRQDEVGTPFCVTVDYDSKEDNTVTLRFRDSMEQVRIPRTELIS 438

Query: 437 YASHRFSNNR 446
                  N +
Sbjct: 439 RIKTEIKNYK 448


>gi|296110401|ref|YP_003620782.1| histidine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295831932|gb|ADG39813.1| histidine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 433

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 145/439 (33%), Gaps = 63/439 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG    LP       +V +  R         E+  P  ++ +++  S     D   
Sbjct: 6   FQRPKGTADLLPDQTVKWQHVESTARLLFGDYNFKEVRTPIFENFEIFSRSAGDTSDVVT 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           KEM    D+ D+ +   P     +   +          + P+  + I   FR E RP+ G
Sbjct: 66  KEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEFDKPYKTFYIGPMFRYE-RPQAG 124

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------- 199
             R R+F      +F             M + +   F  LGL+++ +   +         
Sbjct: 125 --RFRQFHQIGVEAFGSKSPALDVEIIAMAIDF---FKTLGLQNLKVAVNTLGDQRSRAS 179

Query: 200 ---------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                     P   +LS +     +    +V  SKD  D    ++     D +S  +   
Sbjct: 180 YRQALIDYLKPHFDELSTDSQTRLEQNPLRVLDSKDARDQVFVADAPSILDYLSPEATEH 239

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHI-FYF--------GTKYSLPMSA 300
                    +   + ++  ++          I E+  +  +         G +YS     
Sbjct: 240 WQQVQTILKALDIDFEIDATMVRGLDYYNDTIFEIMTVDDHLKGAATIAGGGRYS----- 294

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-----FKISLINIK 355
                 G      +G +GIG  R+++           ++    VAP     F   ++NI 
Sbjct: 295 GLVSEFGGPETPGVG-FGIGIERLIS-----------LLSTQQVAPIDDHGFDFYVVNIG 342

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               V      +I   +   G     D +G    +QF  AD       V +G + +SD  
Sbjct: 343 EKTDVV---ATQIAQAIRSFGYVTERDYLGRSAKAQFKTADRHRAKYVVTIGEQELSDQV 399

Query: 416 VEIKHRLTGIREDMSLEEV 434
             IK+  TG ++ + L E+
Sbjct: 400 ANIKNMTTGQQKTVKLAEL 418


>gi|315142868|gb|ADT81009.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|91772920|ref|YP_565612.1| glycyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|91711935|gb|ABE51862.1| Glycyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 581

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 87/540 (16%), Positives = 168/540 (31%), Gaps = 139/540 (25%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLW-------------- 80
           + G Y + PLG      +  I RE      G +E+  PT+   D++              
Sbjct: 27  AAGFYDYGPLGCTLKRRIEQIWRELYVIHEGFMEIETPTVGIEDVFVASGHVGGFSDPLC 86

Query: 81  -----VESGRYDS------------YGKEMLRLADRND---------------------- 101
                 E+ R D               +E+ RL   ND                      
Sbjct: 87  ECQECEEAFRADHLVDKIVEVADALSNEELDRLIKENDIGCPECGGKLGKAYEFNLMFKT 146

Query: 102 -------KAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
                  +     P   + M   F+   + YR+ LPF   QI   +R+E+ PR GV+R R
Sbjct: 147 NIGPGTGRQGYMRPETAQGMFINFQRLSRYYRDKLPFGATQIGKSYRNEISPRQGVIRLR 206

Query: 154 EFLMKDAYSFD---------------------LTPEGSKHSYNKM--------------F 178
           EF   +A  F                            K +  +M              F
Sbjct: 207 EFTQAEAEIFTHPKEKGHPNFERFAEVTLNLYSDEAQEKGAIEQMTVREAVENDIIAHEF 266

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFPIPSENT 237
           ++Y        L+ + + A+          E    A D  + ++   +      +   + 
Sbjct: 267 LAYHIALTNHFLQRVGIAADKLRFRQHQKDEMAHYAIDCWDAEILTDRFGWIEVVGIADR 326

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYF----- 290
              D+ +           +    +    + F   P+  +     +G              
Sbjct: 327 TDFDLKAHAKTSGTKLEIHIEYDEPKMVEQFVVKPDMGKLGPLFKGKAKAVADALRELSE 386

Query: 291 -------------GTKYSLPMSATFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESS 332
                        G K+++P        +     G+     +     G  R++   +E +
Sbjct: 387 DELSKDEIKVIVNGEKFTVPSEIISYAQETVKVSGEKIVPHVIEPSYGIDRILYCTMEHA 446

Query: 333 HDGKG--------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            D +               + + + VAP +++++ +   D++  +  + I  +L + G  
Sbjct: 447 FDEEKVEVEGDEEEEERMVLRFRNEVAPVQVAILPLLTRDELI-EPAKAIAQKLRERGLL 505

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD    IG ++   D +G P  + +    + D+ V I+ R T  +   S+E + N  
Sbjct: 506 VAYDDSRA-IGRRYRRNDEIGTPYSITIDYDTLEDNSVTIRDRDTMKQVRASVEGIENSI 564


>gi|288904563|ref|YP_003429784.1| seryl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|288731288|emb|CBI12838.1| seryl-tRNA synthetase [Streptococcus gallolyticus UCN34]
          Length = 425

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADSD 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPETSYDELEKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|3873219|gb|AAC77448.1| DrpA [Streptococcus mutans]
          Length = 91

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/79 (53%), Positives = 58/79 (73%)

Query: 11 LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
          L+E P DA++ SH LM+R G I Q + G+YS+LPL  + ++   AI+REE ++ GA+EM 
Sbjct: 12 LREMPSDAQVISHALMVRAGYIRQVTSGVYSYLPLPNRVIEKFKAIMREEFDKIGAVEML 71

Query: 71 VPTLQSADLWVESGRYDSY 89
           PTL +ADLW ESGRYD+Y
Sbjct: 72 APTLLTADLWKESGRYDTY 90


>gi|327458581|gb|EGF04931.1| histidine--tRNA ligase [Streptococcus sanguinis SK1]
          Length = 426

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 142/429 (33%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F+ +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MITMAAQFFNDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSVLDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
           +          +      +  ++          I        G++ ++     + G    
Sbjct: 235 IYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVDLPIETA-LDVYVAVLGAG---ANSRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   V + +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADIFKSKTLITLGESEVENGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|39939112|ref|NP_950878.1| glycyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|39722221|dbj|BAD04711.1| glycyl-tRNA synthetase, class II [Onion yellows phytoplasma OY-M]
          Length = 452

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 124/366 (33%), Gaps = 72/366 (19%)

Query: 92  EMLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRP 145
            ML          N K +   P   + +   F++ +K+  + LPF   QI   FR+E+ P
Sbjct: 141 NMLFKTHQGVILENSKPLYLRPETAQGIFIQFKNILKTTRKKLPFGVCQIGKVFRNEVTP 200

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
              + R+ EF   +   F                                        G 
Sbjct: 201 GNFIFRTCEFEQMELEFFCQ-------------------------------------PGT 223

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +H F              K+ M   + +   +  ++   +   E  +     T D+  +
Sbjct: 224 EAHWFKHW-----------KNLMYDFLITLGMNPQNLTFKDHKKENLSHYSQQTCDILFK 272

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRV 324
             +         S    ++        K       T+     K      +    +G  R+
Sbjct: 273 FPWGFDELWGIASRTNFDLKTHQQHSKK-----DLTYFDETTKQKILPYVIEPSLGIERL 327

Query: 325 VAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             A + +++  +         + +   +AP+K++++ +       +   ++I+  L+K  
Sbjct: 328 FFAFLINNYHEESTSNETRQILTFHPFLAPYKVAVLPLIKKTHSAK--AQEIHQYLAKH- 384

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +D+  + IG ++   D++G P  + V  + ++ + V +++R T  ++   L E   
Sbjct: 385 FDVCYDET-QSIGKRYRRQDMIGTPFCLTVDDQTLTHNTVTLRNRDTTQQQTFLLAEAKK 443

Query: 437 YASHRF 442
           Y   + 
Sbjct: 444 YIQEKI 449


>gi|325107787|ref|YP_004268855.1| glycyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324968055|gb|ADY58833.1| glycyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 553

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 117/372 (31%), Gaps = 54/372 (14%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +         + A    P   + M   F++ + S R  LPF   QI   FR+E+ PR 
Sbjct: 214 MFKTTLGALGGAEDAAFLRPETAQGMFVNFKNVVDSSRVKLPFGICQIGKSFRNEITPRN 273

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F    E + + Y        + +  LG+                 
Sbjct: 274 FTFRSREFEQMEIEFFCRPDESA-NWYQYWRNRRFQWYTDLGI----------------- 315

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                      +     ++     +   +    DI      +               +  
Sbjct: 316 ----------ASDKLQLREHHKEELAHYSVGTADIEYAFPFLSPGDYGELEGVAHRGDFD 365

Query: 268 FDSLPENKRVSARGIEV---GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             S  E K      +++   G   + G+   L     F     +     +     GA R 
Sbjct: 366 LRSHMEGKLDGDLKVQLDENGQPKHRGSGKDLSY---FDDQARERFVPNVIEPSAGADRA 422

Query: 325 VAAVIESSH------DGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             A +  ++      D KG       + +   +AP K ++  +    +   +   KIY  
Sbjct: 423 TLAFLCEAYHVDEQPDEKGKMQTRTVLRFHPRLAPIKAAVFPL-IKKEGMPETAAKIYRD 481

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G    +D  G  IG ++   D +G P  + V  +   D  V ++ R +  +  + L
Sbjct: 482 LKKAGLTAAYDQQGA-IGRRYRRQDEIGTPYCITVDGQTAEDQTVTLRDRDSLEQTRIPL 540

Query: 432 EEVINYASHRFS 443
           + V      R  
Sbjct: 541 DRVTQEIQDRLR 552



 Score = 38.0 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 22/100 (22%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP------ 72
           L  R G + Q S       G + + PLG +   NV     ++       E++ P      
Sbjct: 14  LCKRRGFLFQSSEIYGGVNGFWDYGPLGVELKRNVREAWWQDMIGA-HDEITCPDGAPSA 72

Query: 73  ---------TLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
                     +    +W  SG YD +   M+   +   + 
Sbjct: 73  YSMVGLESSIIMHPQVWKCSGHYDLFHDFMVDCTESKKRY 112


>gi|315142828|gb|ADT80989.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142830|gb|ADT80990.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLSESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|329769592|ref|ZP_08260997.1| histidyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328838544|gb|EGF88151.1| histidyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 426

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 68/457 (14%), Positives = 147/457 (32%), Gaps = 72/457 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP   K    +   +R+  +     E+  P  +S +L+        D 
Sbjct: 1   MVITMPRGTQDILPEESKKWQYIEEKLRKISDSFCYEEIRTPMFESTELFSRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRF 147
             KEM    D+ ++++   P         +  +    + + P   Y +   FR E + + 
Sbjct: 61  VQKEMYTFMDKGNRSITLRPEGTAGTVRSYIENKLFAKTIQPQKLYYVGPMFRYERKQK- 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F+    Y  ++  E S     ++      I+   G+++I +   S        
Sbjct: 120 --GRYRQFVQ---YGVEVIGEESPKIDAEVISLAYNIYKSFGIENIKVSINS-------- 166

Query: 208 HEFIVLADTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                L +  E Q +        +  I     D ++ +  N +        A    + N 
Sbjct: 167 -----LGNPEERQAYNEALVKHFEPRINEFCEDCNNRLYKNPMRILDCKVDAEHELIKNA 221

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGA------ 305
                    +        + H+   G KY +                             
Sbjct: 222 PKLLEYLGEESKQYFAEVLRHLDALGVKYEVDHNLVRGLDYYTHTAFEIMIDNPEVELKT 281

Query: 306 --------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKI 349
                         DG +    +G + +   R++ A+   +     I  P  D++  F +
Sbjct: 282 LCGGGRYNGLIKLLDGPEDKKGIG-FALSIERLLLALESEN-----IELPIDDTIDAFVV 335

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++       +   DA  K+   L   G  V  D   +++ +Q  +AD       +I+G  
Sbjct: 336 AM------GEKAGDAGVKLTNDLRLAGYKVQSDYFDKKMKAQMKLADRYNAKFSIIIGDS 389

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + + +  +K   T  +E++  + ++ Y   +    +
Sbjct: 390 ELENGQYVVKDMKTYDQENVEFDNIVKYLEEKLKGEK 426


>gi|325695668|gb|EGD37567.1| histidine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 426

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 139/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKVAVEGAPSILDYLDEESC 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAS---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADIFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|324989694|gb|EGC21638.1| histidine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 426

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 136/429 (31%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F      +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSNNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 TYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  +           
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGPG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD       + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADTFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|315142834|gb|ADT80992.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila fluviatilis]
          Length = 148

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTLEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|222100452|ref|YP_002535020.1| Histidyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|221572842|gb|ACM23654.1| Histidyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 385

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 129/403 (32%), Gaps = 43/403 (10%)

Query: 67  IEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            E+  P  +  +L+V S     D   KEM    D+  +++   P     +   F  +   
Sbjct: 2   EEIRTPIFEQTELFVRSVGEESDIVQKEMYTFEDKGGRSITLRPEGTAPIVRAFLENSFV 61

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            R     +Y I   FR E +P+ G  R R+F       F     G+        ++    
Sbjct: 62  NRGFQQRYYYIGPMFRYE-KPQSG--RLRQFHQVGFEIFGSESPGADLET---ILAVDNF 115

Query: 185 FHRLGLKSIPMRAES------------------GPIGGDLSHEFIVLADTGETQVFCSKD 226
             RLGL    +   S                  G    DL  +     +T   ++   K 
Sbjct: 116 LKRLGLTKYTIHLNSIGCPECRKNYREALREYYGKHLNDLCDDCKRRYETNILRLLDCKI 175

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +  + +  +  D +        +    Y    ++   +    +      +    EV H
Sbjct: 176 DHELALNAPKS-TDYLCEPCREHYEKLKDYLNEFEIKYVEDHTLVRGLDYYTRTVFEVRH 234

Query: 287 IFYFGTKYSLP----MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
               G + ++         F    G         +  G  R+V A+       +GI  P 
Sbjct: 235 -EGLGAQNAIAGGGRYDGLFSDLGGGTVPAL--GFAGGIERIVLAL-----KAEGIEVPR 286

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
                 +  I +    +       K+   L K G +V  D M   +  Q   AD LG   
Sbjct: 287 KN----VHYIYVATIGEDAFKEGMKLAMELRKKGLNVDVDIMNRNLSGQLKHADRLGAKY 342

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VIVG + +    V +++  TG + ++  E  I Y   + S  
Sbjct: 343 VVIVGDEELEKGVVVLRNLETGDQVEIDKEFAIEYIFEKASKE 385


>gi|315142844|gb|ADT80997.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila comstocki]
          Length = 148

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFDIVFEHPDAVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++    CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAQKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|315142784|gb|ADT80967.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila fluviatilis]
 gi|315142786|gb|ADT80968.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila fluviatilis]
 gi|315142792|gb|ADT80971.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila foliata]
 gi|315142806|gb|ADT80978.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142814|gb|ADT80982.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila coreyi]
 gi|315142816|gb|ADT80983.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila coreyi]
 gi|315142818|gb|ADT80984.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila coreyi]
 gi|315142820|gb|ADT80985.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila coreyi]
 gi|315142822|gb|ADT80986.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila coreyi]
 gi|315142826|gb|ADT80988.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142832|gb|ADT80991.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142836|gb|ADT80993.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila fluviatilis]
 gi|315142838|gb|ADT80994.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila jenkinsi]
 gi|315142854|gb|ADT81002.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila howelli]
 gi|315142860|gb|ADT81005.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila millerae]
 gi|315142862|gb|ADT81006.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila millerae]
 gi|315142864|gb|ADT81007.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila millerae]
 gi|315142870|gb|ADT81010.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila neilyoungi]
 gi|315142872|gb|ADT81011.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila fluviatilis]
          Length = 148

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|289177374|gb|ADC84620.1| Glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 638

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 158/481 (32%), Gaps = 78/481 (16%)

Query: 19  EIASHKLMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMS 70
           E+ S  L  R G +       G     + + PLG    DN+          T    + + 
Sbjct: 155 EVVS--LAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRSMVVTRPDVVGVD 212

Query: 71  VPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
              +  +++WV SG    +     E L    R+    +     E+    +  + +K    
Sbjct: 213 TSIILPSEVWVASGHVSVFNDPLIECLTCHKRHRADKLEESYAEKHNDQLPPNGLKD--- 269

Query: 128 LPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIF 185
                     +    E R    ++R+    ++D  S   L PE ++            IF
Sbjct: 270 --IVCPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQ-----------GIF 316

Query: 186 HRLGLKSIPMRAESGPI------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             +  K++   + S P       G    +E         T+ F   +   F  P  + D+
Sbjct: 317 --VDFKNVMTSSRSKPPFGIANTGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEDW 374

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------- 291
                               +  H E   + L    +   R +++ + F F         
Sbjct: 375 HQYWINARTQWYIDLGVNPENLRHYEHPKEKLAHYSK---RTVDIEYRFGFQGSDWGELE 431

Query: 292 -----TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG- 337
                T + L   A   G D        G+ +   +     G  R + A +  ++D    
Sbjct: 432 GVANRTDFDLGAHAKHSGEDLSYFNQATGEKYIPYVIEPAAGLSRSLMAFLVDAYDVDEA 491

Query: 338 ------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       +     +AP K +++ +    ++     + +   L      + +D+ G
Sbjct: 492 PNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQDLAQDLRLNDWMIDYDESG 550

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             IG ++   D +G PL + V    + D  V I+ R T  +E ++L +V +Y + R ++ 
Sbjct: 551 A-IGRRYRRQDEIGTPLCITVDFDTLDDQAVTIRERDTMQQERVALTQVADYVAKRINDK 609

Query: 446 R 446
           R
Sbjct: 610 R 610


>gi|297584745|ref|YP_003700525.1| histidyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297143202|gb|ADH99959.1| histidyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 429

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 135/436 (30%), Gaps = 52/436 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
            +G    LP   +    +    R+   R    E+  P  +  +L+        D   KEM
Sbjct: 9   PRGTQDILPGESEKWQYIENKARDLCARYRYREIRTPMFEQTELFARGVGDTTDIVQKEM 68

Query: 94  LRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+  +++   P              +  + + P   + I   FR E RP+ G  R 
Sbjct: 69  YTFEDKGGRSLTLRPEGTASTVRSFVDQKMHGWADQPVKLFYIGPMFRYE-RPQSG--RM 125

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F+     +   +          +    +  +  LGLK + +   S  +G   S E   
Sbjct: 126 RQFVQFGVEAMGSSDPAIDAE---VIGLAMDFYRELGLKGVKLVLNS--LGDQESRENHR 180

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A     +    +   D     E      +        +  A   +  D  NE+      
Sbjct: 181 NALISHFEPVIGELCSDCQARLEKNPLRILDCKKDRDHEKMAAAPSILDYLNEESKAYFE 240

Query: 273 ENK-----RVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGS--------- 316
             K           ++ G +   G  Y  +        G         MG          
Sbjct: 241 TVKSYLEAMGIPYEVDPGLVR--GLDYYNNTAFEIMIDGEGFGAITTLMGGGRYNGLVEE 298

Query: 317 ----------YGIGAMRVVAAVIESSHDGKGIIWPDS--VAPFKISLINIKAHDQVCRDA 364
                     + +   R++ A+     + +GI  P +  +  + ++L          +  
Sbjct: 299 IGGPETPGIGFALSIERLLMAL-----ESQGITLPVNHGIDAYMVAL------GDAAKAH 347

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L   G  V  D +  ++  Q   A  L     +I+G + +    +E+KH  TG
Sbjct: 348 VPKLVHELRSAGLSVDTDYLNRKMKGQMKAAGRLHARYALILGDEELEAGTIEVKHMETG 407

Query: 425 IREDMSLEEVINYASH 440
            +E + + E+  Y   
Sbjct: 408 NQETIQISELAAYLQA 423


>gi|315142802|gb|ADT80976.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142846|gb|ADT80998.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142848|gb|ADT80999.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142852|gb|ADT81001.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNSGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|306832797|ref|ZP_07465932.1| serine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304425032|gb|EFM28163.1| serine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 435

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD +
Sbjct: 175 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADSD 234

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 235 ---YVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 291

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 292 KVEMVKFS-KPETSYDELEKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 350

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 351 PAQNTYREISSCSNTEDFQARRAQIRYRD 379


>gi|315142850|gb|ADT81000.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNSGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|312865429|ref|ZP_07725656.1| serine--tRNA ligase [Streptococcus downei F0415]
 gi|311098947|gb|EFQ57164.1| serine--tRNA ligase [Streptococcus downei F0415]
          Length = 425

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADSD 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + +P  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEILDGKEMPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPETSYEELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDVEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNCEDFQARRAQIRYRD 369


>gi|315142856|gb|ADT81003.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila millerae]
          Length = 148

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMIHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|315142794|gb|ADT80972.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila foliata]
 gi|315142796|gb|ADT80973.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila foliata]
          Length = 148

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|167759228|ref|ZP_02431355.1| hypothetical protein CLOSCI_01575 [Clostridium scindens ATCC 35704]
 gi|167663102|gb|EDS07232.1| hypothetical protein CLOSCI_01575 [Clostridium scindens ATCC 35704]
          Length = 482

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 141/436 (32%), Gaps = 83/436 (19%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWV 81
           H+      MI +++         G    D+++    E+        E+  P+    +   
Sbjct: 114 HERFRADKMIEEYA------HANGLDIADSIDGWSHEQMEAYIKEHEVPCPSCGKHNFTE 167

Query: 82  ESGRYDSYGKEMLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQ 136
                      M +    + +     +   P   + +   F++    S + +PF   QI 
Sbjct: 168 I-----REFNLMFKTFQGVTEDAKSVVYLRPETAQGIFVNFKNVQRTSRKKIPFGICQIG 222

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ P     R+REF   +   F   P      +N      L     LGLK   +R
Sbjct: 223 KSFRNEITPGNFTFRTREFEQMELEFF-CEPGTDLEWFNYWKSFCLNWLETLGLKDDEVR 281

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                        +   +    +    +   ++F  P    +   I              
Sbjct: 282 -------------YRDHSPEELSHYSKATTDVEFLFPFGWGELWGIADRTDFDLTQHQNT 328

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +     +                                      F       +   +  
Sbjct: 329 SKQDMSY--------------------------------------FDDEKKAKYVPYVIE 350

Query: 317 YGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEK 367
             +GA R+V A + S++D + +          +  ++AP KI ++ +        +  EK
Sbjct: 351 PSLGADRMVLAFLCSAYDEEELEGGDVRTVLHFHPALAPIKIGVLPLSKK---LNEGAEK 407

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA+LSK   +  +DD G  IG ++   D +G P  V    +   D  V ++ R T  +E
Sbjct: 408 VYAQLSKK-YNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFESEEDGAVTVRDRDTMEQE 465

Query: 428 DMSLEEVINYASHRFS 443
            + +E++  Y + +F 
Sbjct: 466 RIKIEDLDAYFAKKFE 481


>gi|297850234|ref|XP_002892998.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338840|gb|EFH69257.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 363

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 17  DAEIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           DA    H L+         H+ S G + +LP   +  + + A I++E  + G  E+  P 
Sbjct: 75  DARQCDHILLGQQQELFFCHELSPGSWFFLPHATRVYNKLMAFIKKEYWKRGYTEVMSPN 134

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           + +  LW  SG   +  + M    D + +       +      +F+  ++S R 
Sbjct: 135 MYNMKLWETSGHAANEKENMFTF-DVDKQEFGLKHVNCPGHCLLFQQRVRSCRE 187



 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 78/229 (34%), Gaps = 31/229 (13%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           + G   V C    + F     +     +I      +             + ++ D++ +N
Sbjct: 163 EFGLKHVNCPGHCLLFQQRVRSCREHALIQKVMFWQLNKGNGKFYGPSIDVRISDAVKKN 222

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            +     ++    F    ++ L  S++ +                     +  ++   ++
Sbjct: 223 IQCGTLQLD----FQQPDRFKLEYSSSAEDE-------------------MFFILLEHYE 259

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           GK   WP  ++P +  + ++    +  R   EK+  ++ +    V  D  G +I  +   
Sbjct: 260 GK---WPFWLSPHQAIVCSL---SEKHRSYAEKVRDQIHEARYYVDVDISGRKIEEKVRE 313

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVINYASHR 441
           A    +   + VG    +  +V ++ R         MS+E +++    +
Sbjct: 314 AQAAQYNYILAVGDFEAATGQVSVRRREENGSDFVVMSIEALLDVFKAQ 362


>gi|327400106|ref|YP_004340945.1| glycyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327315614|gb|AEA46230.1| glycyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 568

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 79/540 (14%), Positives = 151/540 (27%), Gaps = 133/540 (24%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRY--------- 86
            G   + PLG      +  + RE       A+E+  PT+   ++++ SG           
Sbjct: 25  AGFIDYGPLGNGLRRRLENLWREFFVVNERAVEIDTPTVGIEEVFIASGHATSFTDVAIE 84

Query: 87  ----------DSYGKE--------------------------------------MLRLAD 98
                     D Y KE                                      M     
Sbjct: 85  CKKCGRVFRADHYIKEKLGIEADETVEAVKEILESFDLKCECDGEFGEPTPFNLMFETKI 144

Query: 99  RNDKAM--IYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREF 155
              K       P   + +   F+     +R+ LPF   QI   +R+E+ PR GV+R REF
Sbjct: 145 GPGKGKKGYLRPETAQGIFIAFKRLADYFRDKLPFGVAQIGRAYRNEISPRQGVIRLREF 204

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG-------------------------- 189
              +   F    E     ++      +++  + G                          
Sbjct: 205 NQAELEFFVHPGEKKHPDFHIYADDEVKLLDKFGNEHVITLKEAVEKGIIANEVIAYFIG 264

Query: 190 ---------------LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                          L+    R +          +   L   G  ++    D  D+ +  
Sbjct: 265 KTRRFLLQAGIDDERLRFRQHRDDERAHYASDCWDAEALTSYGWIEIVGIADRGDYDL-- 322

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
            +          S+   +  P           +    P  ++ + +  EV          
Sbjct: 323 -SRHMKYSGEDLSVFVPFKEPVKVKRRKIVPNMGKLGPTFRQKAKKIAEVLESMEIADDS 381

Query: 295 SLPMSATFKGAD------------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              +     G                    G+     +     G  R+  A++E + D  
Sbjct: 382 IEAIEVEVDGEKISVSREFFEVKEVEELIHGEKVTPHVIEPSFGLDRITFAILEHAFDKD 441

Query: 337 --------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                    +     +AP +++++ + +      +   +I   L K G    +DD G  I
Sbjct: 442 IVDGEERRVLRLKRWMAPVQVAVLPLLSKGAFI-EKSIEITFMLKKEGIFTEYDDSG-SI 499

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G ++   D +G P  V V  +   D  V I+ R T  +  + +  +        S ++ +
Sbjct: 500 GRRYRRFDEIGTPFCVTVDHQTFEDETVTIRDRDTTRQIRVHIGGLAPALRELLSTDKDI 559


>gi|319777143|ref|YP_004136794.1| glycyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|318038218|gb|ADV34417.1| Glycyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 453

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 118/354 (33%), Gaps = 68/354 (19%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +     +   P   + +   F++  +S R  LP    Q+   FR+E+ P   + R+RE
Sbjct: 157 VTEETKNKIYLRPETAQGIFVNFKNVQRSMRSKLPMGIGQVGKSFRNEVTPGNFIFRTRE 216

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F   P+ +   Y                K    +AE       LS E + + 
Sbjct: 217 FEQMELEVF-CHPKEANKLY----------------KYYIKKAEKFAEYLGLSKENVRIR 259

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +                   E + +    S    +  +            +   ++  + 
Sbjct: 260 E---------------HEKEELSHYSSGTSDIEYLFPFGWGELLGIANRTDYDLNAHMKA 304

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                                   +  +      +     +    IG  R++ A++  S+
Sbjct: 305 TGE---------------------NLEYVDPVTNEKFVPFVIEPSIGLDRLMLAILIDSY 343

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           D + +             ++AP++++++ +        D   ++Y +L K G  V +D+ 
Sbjct: 344 DEEKLEKDDSRVVLHLHKNLAPYQVAVLPLVKK---LNDKATEVYEKLLKAGLSVTYDET 400

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G  IG ++   D +G P  V +    +  + V I+ R +  ++ + +  ++   
Sbjct: 401 G-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDRDSMKQKTVLINNLLKEL 453


>gi|118579805|ref|YP_901055.1| histidyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|259511953|sp|A1ANS7|SYH_PELPD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118502515|gb|ABK98997.1| histidyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 414

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 138/433 (31%), Gaps = 55/433 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP        +    R    R G  E+ VP ++  +L+  S     D   KEM 
Sbjct: 7   KGCNDILPEESGRWQYIEQAARRIFERNGFSEIRVPIMEKTELFCRSIGDTSDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVMRSR 153
              D+ + ++   P     +   +  H K +   P    Y +   FR E RP+ G  R R
Sbjct: 67  TFTDKGENSVTLRPEGTAGVMRAYIEH-KMHAQDPLAKLYYLGPMFRYE-RPQKG--RYR 122

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGDLS 207
           +F    A    +T          M  ++   FH +GL    ++       +  P      
Sbjct: 123 QFHQIGAEVTGVTDPLVDAQVLNMLCAF---FHEIGLDEPTLQINSLGCPDCRPAYRAAL 179

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATSDV 262
            EF+     G     C      F +         +      +  +         A     
Sbjct: 180 MEFL----QGRLDRLCDDCKRRFTVNPLRTLDCKSAGCAEATKGAPAMLDHLCTACDDHF 235

Query: 263 HNEKLF----DSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG---ADGK 308
            + K +     S         RG++              G + ++     + G     G 
Sbjct: 236 SSVKRYLDLTGSRYSINPRMVRGLDYYTRTTFELVTGLLGAQSAVAAGGRYDGLISQLGG 295

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +G + +G  R VA ++      +            + +  + A     RD    +
Sbjct: 296 PSIPGIG-FAMGVER-VALLLGERDFSRRP---------DLFIATMGAG---QRDKAFCL 341

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G  V  D  G+ + SQ   AD L     V++G   ++  +   K    G++ +
Sbjct: 342 LTKLQNQGIRVEMDYEGKSLKSQMRRADKLRARFSVVIGENELATGRASFKRMEDGVQNE 401

Query: 429 MSLE--EVINYAS 439
            +LE  +++   +
Sbjct: 402 AALEADDIVTLLA 414


>gi|289193081|ref|YP_003459022.1| histidyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288939531|gb|ADC70286.1| histidyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 413

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 143/439 (32%), Gaps = 61/439 (13%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           + Q  +G   +LP   K    +   +RE   R G  E+  PT ++ +L   ++G  +   
Sbjct: 1   MFQKPRGTRDFLPEEMKKRRFIENKLREVFERYGYKEILTPTFETFELIAKKTG--EEIR 58

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K++    D   + M   P     +   + + +K+    P   Y     FR E RP+ G  
Sbjct: 59  KQLYVFKDHGGREMALRPEMTSPVVRFYLNELKN-LQKPLRLYYFANCFRYE-RPQAG-- 114

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R REF              +      +    +     +GL         G + G L    
Sbjct: 115 RFREFWQMGCELIGCKEPLADAE---VLNLAMDGLINIGLDFDVHIGHLGVLKGVLEEFN 171

Query: 209 ----------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                       I   D    +V+ ++   +                  + E        
Sbjct: 172 VSEEEEVKIRRLIDKEDYENLEVYLNEILGEEKKELIFDILKFKGGREILDELKEILKDF 231

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              +   K  + + E        I +G     G  Y   M     G  G       G Y 
Sbjct: 232 PKSIEAIKNLEKILEFVIHDKYTINLGIAR--GLDYYTGMVFEIYGKKGAKQICGGGRYD 289

Query: 319 IGAM-----------------RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                                R++  + +   + +GI+           +I +K   ++ 
Sbjct: 290 NLIETFGGEPTPAVGFAYGFDRIMMNIDDLDIEEEGIL-----------IIPVKKDKELI 338

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSDSKVE 417
           +     I  +L K G  V      E +G +       A+  GF   +IVG K +++ KV 
Sbjct: 339 K-KSLIIADKLRKAGKIVEL----EIMGRKLRKALDYANSRGFKKVIIVGEKELNEGKVT 393

Query: 418 IKHRLTGIREDMSLEEVIN 436
           +K  +TG ++ +S++E++N
Sbjct: 394 LKDMITGEQKLISIDELVN 412


>gi|15605705|ref|NP_213082.1| histidyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|7674344|sp|O66522|SYH_AQUAE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2982856|gb|AAC06477.1| histidyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 403

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 127/413 (30%), Gaps = 25/413 (6%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G +  L    K    ++   R+        E+ +P ++ A+L+  S     D   K
Sbjct: 4   QSVRGFHDILGKDAKKFRKISDTARKILKLYNFEEIILPVVEYAELFQRSVGETTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR  + +   P         F  H           +     FR E RP+ G  R
Sbjct: 64  EMFVFEDRKGRKLALRPEGTAGTVRAFIQHKLYALRPYVKLFYEGPMFRYE-RPQAG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F +    +     K+      I   LG+K + +   S  +G     E  
Sbjct: 121 YRQFHQIGAEVFGVAEPHADAEIIKIV---YDILQALGIKGVVVEINS--LGCKKDREAY 175

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A          +   D  I   + +   ++       +     A              
Sbjct: 176 REALLNYLTGVKEELCSDC-ISRMDRNPLRVLDCKVETCKVAVREAPKMIDFLCDECREH 234

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E  +   + +++     F   Y+L     +      +         + A      ++E 
Sbjct: 235 YEKLKNYLKALDI----PFRENYNLVRGLDYYTRTVFEAVSDELGLTLIAGGRYDYLVEE 290

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQV----------CRDACEKIYARLSKVGCDVFW 381
                      ++   ++ L+     ++             +   ++   L K G  V +
Sbjct: 291 LGGPPTPALGFALGVERLMLLLPDEEEKEEVYFVIPFGDVHEYALRVADILRKKGKVVEY 350

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                 +  Q   AD LG    VI+G   V + +V IK   TG +  + L E+
Sbjct: 351 SYRKGGLKKQLEFADKLGVKYAVIIGEDEVKNQEVTIKDMETGEQRRVKLSEL 403


>gi|238810062|dbj|BAH69852.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 466

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 118/354 (33%), Gaps = 68/354 (19%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +     +   P   + +   F++  +S R  LP    Q+   FR+E+ P   + R+RE
Sbjct: 170 VTEETKNKIYLRPETAQGIFVNFKNVQRSMRSKLPMGIGQVGKSFRNEVTPGNFIFRTRE 229

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F           NK++            K    +AE       LS E + + 
Sbjct: 230 FEQMELEVFCHP-----KEANKLY------------KYYIKKAEKFAEYLGLSKENVRIR 272

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +                   E + +    S    +  +            +   ++  + 
Sbjct: 273 E---------------HEKEELSHYSSGTSDIEYLFPFGWGELLGIANRTDYDLNAHMKA 317

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                                   +  +      +     +    IG  R++ A++  S+
Sbjct: 318 TGE---------------------NLEYVDPVTNEKFVPFVIEPSIGLDRLMLAILIDSY 356

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           D + +             ++AP++++++ +        D   ++Y +L K G  V +D+ 
Sbjct: 357 DEEKLEKDDSRVVLHLHKNLAPYQVAVLPLVKK---LNDKATEVYEKLLKAGLSVTYDET 413

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G  IG ++   D +G P  V +    +  + V I+ R +  ++ + +  ++   
Sbjct: 414 G-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDRDSMKQKTVLINNLLKEL 466


>gi|312875916|ref|ZP_07735906.1| glycyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797397|gb|EFR13736.1| glycyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 434

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/477 (15%), Positives = 151/477 (31%), Gaps = 113/477 (23%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S   G     + + PLG +  +N+  +  +   Q R   + +    L +
Sbjct: 10  LCKRRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMN 69

Query: 77  ADLWVESGRYDSYGK--------------------------------EML---------R 95
             +W  SG   ++                                   M           
Sbjct: 70  PKVWEASGHLSNFADPMADCKVCKKRWRVDQLQEYKCPECGGELTEARMFNLMFKTFMGP 129

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D +    +   T + +  +         + LPF   QI   FR+E+ P   + R+REF
Sbjct: 130 VEDESAVVYLRPETAQGIFVNFINVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRTREF 189

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F + P   +  +       +  +++LG+K                 E + + +
Sbjct: 190 EQMEIEYF-VKPGTDEQWHKHWIEQRINWYYKLGIK----------------KENLRIRE 232

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G+ ++                      +   I   +   ++    + N   FD      
Sbjct: 233 HGKDELA-----------------HYAKACVDIEYLFPMGWSELEGIANRTDFDLTQH-- 273

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                            KYS      F     + +   +     G  R + A +  +++ 
Sbjct: 274 ----------------QKYSGENLTYFDDETKQRYIPYVIEPSAGVDRSLLAFLIDAYEY 317

Query: 336 KGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + I             ++AP K ++  +    +      ++IY  L      V +D+ G 
Sbjct: 318 QQIDKDDFRVVLHLHPAIAPVKAAVFPL-MKKEKLVKKAKEIYNELKYKWI-VQYDESG- 374

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  + V  + + D  V I+ R T  +  + ++E+I Y   R  
Sbjct: 375 SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVRVHIKEIIPYLEERIE 431


>gi|282892398|ref|ZP_06300748.1| hypothetical protein pah_c253o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497800|gb|EFB40161.1| hypothetical protein pah_c253o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 481

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 139/429 (32%), Gaps = 52/429 (12%)

Query: 36  SKGIYSWLPLGQ-------KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-Y 86
             G++  LP G             V ++IR+     G  E+  P  +  +L+    G   
Sbjct: 6   PPGVFDILPRGTEETWQLSHLWTYVESVIRKLAAEYGFEEIRTPIFERTELFKRGVGEAT 65

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    DR  ++M   P     +   F  H     +     + I   FR E    
Sbjct: 66  DVVSKEMYTFEDRGGRSMSLRPEGTAPVVRSFVEHNLHTESRTHKLFYIGPMFRYERSQA 125

Query: 147 FGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-- 203
               R R+             PE      + ++  Y     RLGL ++ +   S  IG  
Sbjct: 126 ---GRYRQHHQFGVEVIGCDAPEQDAEVIDLLYTLY----RRLGLSNLQVYINS--IGTP 176

Query: 204 ------------------GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                               LS +     +T   ++  SK+  D  I +      D +  
Sbjct: 177 EARIAYKEALKNYLKEHFDGLSEDSKTRFETNPLRILDSKNPGDQKIVASAPSILDFLDD 236

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG- 304
            S     T     T       +  +L        + +        G + S+     + G 
Sbjct: 237 ASRTHFETVKQLLTQLNIPFVVNSNLVRGLDYYNKTVFEIVSGQLGAQNSVGGGGRYDGL 296

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G +G G  R++  ++      + I  P+   P++ +L  I    +   
Sbjct: 297 IKTIGGPDLPALG-FGTGIERIIQTML-----KQEIALPN---PYQPALFFIPLGKE-AE 346

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C  +   L + G  V  D   ++IG    +A+ +G     +VG + +   +V++K   
Sbjct: 347 KTCFTLAHDLRQKGISVQMDFSRKKIGKAMQLANQVGARFVAVVGDQELQKREVQLKEMA 406

Query: 423 TGIREDMSL 431
           TG      L
Sbjct: 407 TGETYTAPL 415


>gi|325475340|gb|EGC78525.1| glycyl-tRNA synthetase [Treponema denticola F0402]
          Length = 451

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 72/490 (14%), Positives = 151/490 (30%), Gaps = 123/490 (25%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +  +NV+    +E  +     + +    L  
Sbjct: 14  LCKRRGFVFQSSEIYGGQNGAWDYGPLGIELKNNVSRAWWKEMTQLHDNIVGLDAAILMH 73

Query: 77  ADLWVESGRYDSYGK-----------------------------------------EMLR 95
              W  SG  +++                                            M +
Sbjct: 74  PRTWEASGHVENFTDPLVDCKKCKSRFRADHLPPENLEKRVCPDCGGELTDTRKFNLMFK 133

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
                 D N   +   P   + +   +++ I+S R  +PF   QI   FR+E+  +  + 
Sbjct: 134 THIGPTDDNSSVIYLRPETAQGIYVNYKNIIQSNRMKIPFGIAQIGKAFRNEIVTKNFIF 193

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+ EF   +   F + P      ++         + + G+++  ++              
Sbjct: 194 RTCEFEQMEMQFF-VKPGTDDEWFDYWKKQRWAFYEKYGVRTNKLQ-------------- 238

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                 G+ ++                          I  ++   +     VHN   +D 
Sbjct: 239 --WHQHGKDELA-----------------HYAKDAYDIEYEFPMGFKELEGVHNRTNYDL 279

Query: 271 LPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                                T+YS   M    +    + +   +     G  R V   I
Sbjct: 280 TRH------------------TEYSGKDMQYIDQDNGNEKYIPYIIETSAGLTRNVLMFI 321

Query: 330 ESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             ++D +              + +  ++AP  ++++ +   D +  +  E+I   L +  
Sbjct: 322 CDAYDEEKVADKGNDDDWRTVLHFHPNIAPITVAVLPLMKKDGLA-ELAEEIRNELKEE- 379

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +D  G  IG ++   D +G P  V V      D+ V ++ R +  +  +   E+I+
Sbjct: 380 FKTDYDQSGA-IGKRYRRQDEVGTPFCVTVDYDSKEDNTVTLRFRDSMEQVRIPRTELIS 438

Query: 437 YASHRFSNNR 446
                  N +
Sbjct: 439 RIKTEIKNYK 448


>gi|294101540|ref|YP_003553398.1| histidyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616520|gb|ADE56674.1| histidyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 420

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 138/445 (31%), Gaps = 65/445 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           +  +G+   LP        V  I  E     G  E+ +P  +  +L+        D   K
Sbjct: 5   KAPRGVRDILPEESWKWSYVLKIAAEVAKNFGYSEVHLPVFEHTELFSRGIGETTDVVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR  +++   P     M   +  +  +    P   +     FR E RP+ G  R
Sbjct: 65  EMYTFEDRGGRSLTLRPEATASMVRCYLENKLNSHAQPVKLWCAGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+F   D  S              +    L ++ RLGL+++ +   S       P   +
Sbjct: 122 YRQFWQLDFESLGTKNPMVDVE---VIALSLELYRRLGLQNLEVVINSVGCPECRPAYKE 178

Query: 206 LSHEFIVLA------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
              E+                +    ++   K+     I     D    +  +       
Sbjct: 179 KLKEYFKPRYEELCKTCQSRFERNPLRILDCKNPECKEITDGAPDIYTSLCDDCRCHFDK 238

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL------PMSATFKGADG 307
                           +     +   RG++        T Y +        +A   G  G
Sbjct: 239 VQEGL-------SRIGAHYHIDKRLVRGLDYYTK----TAYEVLSGALGAQNAVCGG--G 285

Query: 308 KDHYVQMGSYGIGA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +   +     G           +  +  V+E  +   G       +P  + +  I   D+
Sbjct: 286 RYDNLAETIGGPFTPSVGFATGLERIVLVMEEQNCSFGP------SP-DLDVYAIGL-DE 337

Query: 360 VCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             R+  +K+ A L +       D  + G +   + A A   G     I+G   +++  V 
Sbjct: 338 ASREELQKLVAELRQANISTDMDYMERGMKAQFKSADAS--GAVFACILGGNELANGVVN 395

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +K+  TG + ++    V+NY     
Sbjct: 396 VKNLKTGEQVEVERTAVLNYIKSNL 420


>gi|23099475|ref|NP_692941.1| histidyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
 gi|32130108|sp|Q8EPR9|SYH_OCEIH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|22777704|dbj|BAC13976.1| histidyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
          Length = 429

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 137/442 (30%), Gaps = 42/442 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G    LP          + I+E  +     E+  P  +  +++        D 
Sbjct: 1   MSMKAPRGTVDLLPEQSIKWQFAESKIKEICHNYHYQEIRTPLFEHTEVFQRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    DR  +++   P     +   +  + +    N P   +     FR E RP+ 
Sbjct: 61  VQKEMYTFEDRGGRSLTLRPEGTASVARAYVENKLFGSPNQPTKLFYFGSMFRYE-RPQK 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------- 199
           G  R R+                      +    + I+  LGLKS+ +   S        
Sbjct: 120 G--RMRQLNQFGTEVIGSEDPAVDAE---VMDFAMNIYKSLGLKSVKLVINSLGDQESRE 174

Query: 200 ----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN-SI 248
                      P   +L H+     D    +V   K   D P         D ++     
Sbjct: 175 SHRNALIQHFEPHREELCHDCQNRLDKNPLRVLDCKKDRDHPAMGTAPKITDFLNEYSKT 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKG--- 304
                  Y    D+      + +      +    E+      FG   +L     + G   
Sbjct: 235 YFADVMTYLDALDIEYVVDPNLVRGLDYYNHTAFEIMSEAEGFGAITTLAGGGRYNGLVE 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +G+G  R++ A+   +     I  P      ++        D+   + 
Sbjct: 295 EFGGPSSPGIG-FGMGLERLIMALEAEN-----ITLPID---QQLDCFVANMGDESKLE- 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+  RL   G     D    ++  Q   AD       + +G   +   +V +K   TG
Sbjct: 345 ATKVVKRLRDNGIQADMDYQKRKMKGQLKAADRYQSKFVIFLGDDEIEKQEVTLKEMSTG 404

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            + ++S+ +++     + +  +
Sbjct: 405 DQSEVSMSQLVEVLQEKLNGGK 426


>gi|297616960|ref|YP_003702119.1| histidyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144797|gb|ADI01554.1| histidyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 421

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 137/440 (31%), Gaps = 63/440 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
            +G Y  LP   +    +  ++RE     G  E+  P  +  +L+        D   KEM
Sbjct: 6   PRGTYDILPDESRKWQWLEGLLRETAELYGFREIRTPVFEHTELFQRGVGETTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              AD+  +++   P         F  H    +  P  +Y +   FR + RP+ G  R R
Sbjct: 66  YTFADKARRSLTLRPEGTASCARAFIQHQIYNQPQPVKWYYLGPMFRYD-RPQAG--RYR 122

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------------- 199
           +F    A  F             M V    +F   GL    +R  S              
Sbjct: 123 QFHQFGAEVFGSNNPFVDAELIVMMVDM--VFKA-GLPQYDLRLNSVGCETCRPSYRQAL 179

Query: 200 ----GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                PI  +L  +     +    +V   K+       +      D    +         
Sbjct: 180 VSFLQPIKKELCQDCRKRIELNPLRVLDCKNQGCREAVTGLPRVADYWCNDCRQHFTAVT 239

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF-------------GTKYSLPMSA 300
            +      +  + D          RG++      F               G +Y+  +  
Sbjct: 240 QSLDRYEVSYTVDD-------RLVRGLDYYTNTAFELLVPGIGAQNAIGGGGRYNH-LVR 291

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G D     V    + IG  R+++ V E    G   ++   +   ++ +       + 
Sbjct: 292 EVGGPD-----VPGIGFAIGLERLLSGVEE---AGALPVFSPDI---EVYIAVTGREYEA 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   +    L + G     D MG  + +Q   AD L  P+ V++G    +     I+ 
Sbjct: 341 SADQALR---ELRRAGLKADRDYMGRSLKAQMRQADRLQVPVVVLIGEDEATRGTYTIRR 397

Query: 421 RLTGIREDMSLEEVINYASH 440
             T  + ++   ++I+    
Sbjct: 398 MQTKEQYEIGQADLIDEVRK 417


>gi|228476027|ref|ZP_04060735.1| glycine--tRNA ligase [Staphylococcus hominis SK119]
 gi|314936314|ref|ZP_07843661.1| glycine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|228269850|gb|EEK11330.1| glycine--tRNA ligase [Staphylococcus hominis SK119]
 gi|313654933|gb|EFS18678.1| glycine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 463

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 132/367 (35%), Gaps = 74/367 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEGSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    LK + +           +
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASQWLKDLNI-----------N 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++                      +   I  ++   +     + +   
Sbjct: 257 EENMRLRDHDEEELSHYS-----------------NATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLKK-------------HSEHSGEDFR------YHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++D +G          + +  ++AP+K +++ +        +   KI+ +LS   
Sbjct: 341 AFLCDAYDEEGVEGSKDARTVMHFHPALAPYKAAILPLSKK---LSEEAIKIFEQLSSK- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSVDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELET 455

Query: 437 YASHRFS 443
           + + +  
Sbjct: 456 FLAEKVK 462


>gi|282881885|ref|ZP_06290536.1| histidine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|300813282|ref|ZP_07093639.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|281298294|gb|EFA90739.1| histidine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|300512607|gb|EFK39750.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 435

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 141/438 (32%), Gaps = 46/438 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +  IIR+   R G + +  P ++ +++ +  G  ++  K++ R 
Sbjct: 10  PGFMELLPKEQILFNQMRDIIRKNFERAGFLPIDTPVIEKSEVLLAKGGGET-EKQIYRF 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             + D  M        V    +     S  + PF  Y I   +R E + + G  R REF 
Sbjct: 69  T-KGDTDMSLR-FDLTVPLARYTVEHFSELSFPFKRYAIGKVYRGE-KAQKG--RFREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--------GGDLSH 208
             D  +         +      V Y   F  LG     +   +  I        G   S 
Sbjct: 124 QCDIDTIGNGELSIANDAEFPVVIYH-TFKDLGFSDFTIHLNNRRILKGFFAWLGVSDSQ 182

Query: 209 E----------------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                               L ++G  +    K      I   N +    +   +I E+ 
Sbjct: 183 NALRAVDKIEKIGPENVLKELEESGIDREKGKKILEFIEIKGTNDEIIQALKDLNIDEET 242

Query: 253 TAPYAATSDVHNEKLFDSLPENKRV-SARGIEVGHIFYFGTKYSLPMSATFK-------- 303
                         +     + K       I  G  +Y GT Y   +    K        
Sbjct: 243 FNQGLDEMSELISCIKAYNIDEKNYRIDLKIARGLDYYTGTVYETTLDDYPKIGSVCSGG 302

Query: 304 -GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +   +Y +    G+G    ++ +       K I   D  +   I ++ +        
Sbjct: 303 RYDNLASYYTEKTLPGVGISIGLSRLFYQLEQAKIISAEDK-SLIDIIILPMDGFIHEGI 361

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               K+ A+L +    V       ++G +F  AD +  P  +++G   V +    +++  
Sbjct: 362 ----KLLAKLREKNVKVTIYSEDAKLGKKFKYADQIKVPYAIVLGENEVKNGLYSLRNMA 417

Query: 423 TGIREDMSLEEVINYASH 440
           TG +E++   +++   S 
Sbjct: 418 TGEQEEVDFNKLVEKFSK 435


>gi|315142840|gb|ADT80995.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila comstocki]
 gi|315142842|gb|ADT80996.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila comstocki]
          Length = 148

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++    CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAQKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|320535809|ref|ZP_08035890.1| glycyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320147357|gb|EFW38892.1| glycyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 452

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 65/490 (13%), Positives = 140/490 (28%), Gaps = 123/490 (25%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +  +N++    +E  +     + +    L  
Sbjct: 16  LCKRRGFVFQSSEIYGGQNGAWDYGPLGIELKNNISRAWWKEMTQLHDNIVGLDAAILMH 75

Query: 77  ADLWVESGRYDSYGK-----------------------------------------EMLR 95
             +W  SG  +++                                            M +
Sbjct: 76  PRVWEASGHVENFTDPLVDCKKCKARFRADQMDQEKLAKKICPECGGELTDTRKFNLMFK 135

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
                 D N   +   P   + +   +++  +S R  +PF   QI   FR+E+  +  + 
Sbjct: 136 THIGATDDNSSLIYLRPETAQGIYVNYKNVAQSNRLKIPFGIAQIGKAFRNEIVTKNFIF 195

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+ EF   +   F                                     P   D   E+
Sbjct: 196 RTCEFEQMEMQFFV-----------------------------------KPGTDDEWFEY 220

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                  +   F  K  +       +    D ++  +                 E + + 
Sbjct: 221 W----KKQRWAFYEKHGVRMHKLRWHQHGPDELAHYAKDAFDIEYEFPMGFKELEGVHNR 276

Query: 271 LPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +                 T+YS   +    +  + + +   +     G  R +   I
Sbjct: 277 TDFDLTRH-------------TQYSGKDLQYIDQDNNNERYIPYIIETSAGLTRNLLMFI 323

Query: 330 ESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +++ +              + +   +AP  ++++ +   D +  +  E+I   L    
Sbjct: 324 CDAYEEEKVADKGNADDWRTVLRFHPLIAPITVAVLPLMKKDGLA-ELAEEIRNELRSE- 381

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +D  G  IG ++   D  G P  + V      D  V ++ R +  +  +   E++N
Sbjct: 382 FKTDFDLSGA-IGKRYRRQDEAGTPFCITVDYDSKKDGTVTLRFRDSMEQIRIPRSEIVN 440

Query: 437 YASHRFSNNR 446
                  N +
Sbjct: 441 TIRQAIKNYK 450


>gi|148545053|ref|YP_001272423.1| histidyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184154386|ref|YP_001842727.1| histidyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364203|ref|ZP_03848299.1| histidyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325683406|ref|ZP_08162922.1| histidine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|148532087|gb|ABQ84086.1| histidyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183225730|dbj|BAG26247.1| histidyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070748|gb|EEI09075.1| histidyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324977756|gb|EGC14707.1| histidine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 425

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 137/435 (31%), Gaps = 46/435 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +Q  KG    LP      + V    RE  N+ G   +  P  +   ++        D 
Sbjct: 1   MDYQKPKGTADILPGTTSIWEKVEQNAREVFNQFGYRGIRTPMFEDYHVFSRNVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +       P     Y +   FR E RP+
Sbjct: 61  VEKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF      + +            M ++   +F + G+ ++ +   +  +G   
Sbjct: 120 SG--RQREFHQIGVEALNNESPQIDVEVISMAMA---LFKKFGVPNVKLVINT--LGDKK 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A     +    +   D            + S +   ++  A   +  D  +E+
Sbjct: 173 VREDYREALINYLKPHYDELSKDSQERLYKNPLRVLDSKDEGDKKIVAEAPSILDYLDEE 232

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYV 312
               FD +           E+      G  Y           S      +        Y 
Sbjct: 233 SQAYFDEVQALLNKLGIDFEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYN 292

Query: 313 QMGS-----------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            + S           +G+G  R++  + E +          + AP     +   + DQ  
Sbjct: 293 GLISQLGGPEEGGIGFGMGVERLMLLLQEEN---------PAFAPQDQLDVFFASADQQG 343

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++ +++ + G     D  G ++G Q   A         + G++ V +   ++K+ 
Sbjct: 344 DEMAFEVLSKIRQQGIVADKDYSGVKVGKQIKEAFRRNAKYFAVFGAREVEEGTFQLKNA 403

Query: 422 LTGIREDMSLEEVIN 436
            T     + + + + 
Sbjct: 404 ATKDATTIKVSDFVA 418


>gi|332364081|gb|EGJ41858.1| histidine--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 426

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 136/429 (31%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEGFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F      +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSNNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 NYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  +           
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGPG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD       + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADTFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|327439656|dbj|BAK16021.1| histidyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 422

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 60/444 (13%), Positives = 136/444 (30%), Gaps = 58/444 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  +  KG    LP   +    V  +IR+   +    E+  P  +S +L+        D 
Sbjct: 1   MNFKVPKGTQDILPGQSEKWQYVERVIRDLCEKYRYNEIRTPMFESTELFQRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+ ++++   P         +  H      + P   Y     FR E R + 
Sbjct: 61  VQKEMYTFTDKGNRSLTLRPEGTASAVRAYVEHKMFGQADQPVKLYYTGPMFRYE-RQQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESG- 200
           G  R R+F+     +              +    + ++  LGL  + +        ++  
Sbjct: 120 G--RYRQFVQFGVEAIGSADPAIDAE---VMALAMDVYTTLGLSDLKLVINSLGDKDTRD 174

Query: 201 -----------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                      P+ G+L  +     +    ++   K     P  +      + ++ +S  
Sbjct: 175 AHRSALIEHFTPVVGELCSDCQSRLEKNPLRILDCKVDAKHPAMATAPALTNYLTDSSAE 234

Query: 250 EQWTAPYA-------ATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMS 299
                             D +  +  D             E  G I     G +Y    +
Sbjct: 235 YFTKVKQYLDVLGISYEVDPNLVRGLDYYNHTAFEIMITGEGFGSITTLCGGGRY----N 290

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVI---ESSHDGKGIIWPDSVAPFKISLINIKA 356
              +   G +       + +   R++ A+         G  +         ++ ++ +  
Sbjct: 291 GLVEDIGGPESPGI--GFALSIERLLLALEAKNIELATGNNL---------EMYVVAMG- 338

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +    ++ +     G     D +  ++ +Q   AD       +++G   + +  V
Sbjct: 339 --EEAKLKAVELVSSFRAKGISADMDYLDRKMKAQMKAADRANAKFVIVLGESELEEQAV 396

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            +K   TG +  +   +++ Y   
Sbjct: 397 NVKTMETGDQTKVEFGQLVQYVLE 420


>gi|294887331|ref|XP_002772056.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239875994|gb|EER03872.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 596

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 121/327 (37%), Gaps = 30/327 (9%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +PF   QI L FR+E+ PR G++R REF M +   F          ++K+         +
Sbjct: 259 MPFAAAQIGLGFRNEIAPRAGLLRVREFPMAEIEHFVHPDHKDHPDFHKVADL------K 312

Query: 188 LGLKSIPMRAESGPIGGDLS--HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           L L     +   G +  DL+      +     ET  +       F + +      D   L
Sbjct: 313 LPLFPQHNQLTDGKLRTDLTLRQAVDIGMINNETLAYFMGRTFLFLVKAG----VDGSML 368

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---LPMSATF 302
                  +       D  + +   S    +      +++      G +Y+     +    
Sbjct: 369 RFRQHLKSEMAHYACDCWDAEALLSYGWTEINGVYELKICT----GARYNITKEMVKVKT 424

Query: 303 KGADGKDHYVQ--MGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISL 351
                ++      +     G  R++  ++E +   +          +  P  VAP K+S+
Sbjct: 425 VTKRVQEVPFIPSVIEPAFGVGRIIYTILEHTFRSREMEDQELRCYLSLPPVVAPTKVSV 484

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I ++    + A  KI   L + G     DD G+ IG ++A  D +G P  + +  + +
Sbjct: 485 LPISSNPTQFKPAMHKITDALKEHGISYKVDDSGQAIGKRYARTDEIGIPFGITIDFQSL 544

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYA 438
           +D  V ++ R +  +  + + +V +  
Sbjct: 545 NDDTVTLRERDSMSQIRLPIADVADLV 571



 Score = 43.8 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ A+ R    N    +E+    L    +   SG  + +   M++
Sbjct: 88  AGLYDFGPPGCALKANLEALWRRHFINHDNMLEIQCTCLTPEVVLKTSGHVEKFTDLMVK 147

Query: 96  LADRNDKAMIYGPTHEE 112
                D+        EE
Sbjct: 148 NEKNPDEYYRADKLLEE 164


>gi|14590213|ref|NP_142278.1| histidyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|3915065|sp|O58028|SYH_PYRHO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|3256679|dbj|BAA29362.1| 431aa long hypothetical histidyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 431

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 148/452 (32%), Gaps = 61/452 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  KG   +LP        V   IRE     G  E+  P ++   L+   SG  +  
Sbjct: 1   MIERV-KGTRDFLPEDMAKRRWVFEKIREVFEAYGFKEILTPVMEYTKLFQLRSG--EEV 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D+  + +   P     +  ++ +  +     P  +Y I   FR E  P+ G 
Sbjct: 58  VKQLYAFKDKGGRDVSLRPDMTSSVARLYVNSFQM-APKPIKWYYIANMFRYEE-PQSG- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R REF              +      +   ++  +   GL+   +      +  + +  
Sbjct: 115 -RYREFWQAGVELIGSDKVEADAE---VIALFVESYLSTGLRDFTVNIGDRILLDEFAGM 170

Query: 210 FIVLADTGETQVFC-------------------SKDFMDFPIPSENTDFDDIISLNSIVE 250
             V  D G  ++                      +  ++  +            L    E
Sbjct: 171 LGVSDDIGLMRIIDKRDKLSQEEFINLLKEFGLGESEIEKVLELVEIKGRPDNVLPLAEE 230

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----- 305
            + +  A        KL D L          I++G    F    S+   A          
Sbjct: 231 LFKSKKAKEEISKLYKLTDLLEWYGVKDWIRIDLGIARGFDYYTSIVFEAISPNELGIGS 290

Query: 306 --------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                          GK        + IG  R++  ++E     KG+I      P ++ +
Sbjct: 291 IGGGGRYDNLIEIFGGKPTPA--TGFAIGIERLLP-ILEW----KGLIPKPQTGP-EVFV 342

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +K  ++V  +   K    L +       +  G ++G     A+ +G  L +IVG + V
Sbjct: 343 IPLKDMEKVAINIAVK----LRREKIKTDIELSGRKLGKALDYANRVGAKLVIIVGKRDV 398

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               V I+   +G + ++SL E+++   +   
Sbjct: 399 ERGVVTIRDMESGEQYNVSLNEIVDKVKNLLK 430


>gi|315142808|gb|ADT80979.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142810|gb|ADT80980.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142812|gb|ADT80981.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELHEASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|24380435|ref|NP_722390.1| histidyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|32130103|sp|Q8CWW2|SYH_STRMU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|24378462|gb|AAN59696.1|AE015032_1 histidyl-tRNA synthetase (histidine--tRNA ligase) [Streptococcus
           mutans UA159]
          Length = 429

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 152/453 (33%), Gaps = 66/453 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQETVKWQYVENVARKTFKKYHYGEIRTPMFERYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   + I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVFYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F             M  +Y  +F+ LG+K + +   S       
Sbjct: 120 AG--RLREFHQLGVECFGSNNPAIDAETIAM--AYQ-LFNELGIKDVTLHLNSLGNKESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +  +S 
Sbjct: 175 KAYRQALIDYLIPMKDKLSKDSQRRLEENPLRVLDSKEKEDKEAVENAPSILDYLDDDSQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGAD 306
                            ++ D          RG++     IF F T+          G  
Sbjct: 235 AHFQG-------VRDMLEVLDIPYVIDTNMVRGLDYYNHTIFEFITQVDKSELTLCAG-- 285

Query: 307 GKDHYVQMG---------SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           G+   +             +G+G  R++  +     D + I  P   +   + +  + A 
Sbjct: 286 GRYDSLVEYFGGPATAGFGFGLGLERLLLVI-----DKQKINLPVDNS-LDVYIAVLGA- 338

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    ++   + K G     D +  +I +QF  AD+    L + +G   V   +V 
Sbjct: 339 --AANSTALELIQAIRKQGFSAERDYLSRKIKAQFKSADVFKTKLIMTLGESEVETGQVA 396

Query: 418 IKHRLTGIREDMSLEEV-INYAS--HRFSNNRP 447
           +K+  T     +S EE+  ++AS   +  ++RP
Sbjct: 397 VKNNFTRQEIAVSFEEIKTDFASVFKQLGSDRP 429


>gi|313623670|gb|EFR93824.1| histidyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 425

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 149/436 (34%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        + +  ++        E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLESAFKKVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFEDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMEFFRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKKYLTALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVK 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +GIG  R++ A+     +   I  P++  P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGIG-FGIGVERILLAL-----EKAEINIPET-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  ++ +Q   A+       VI+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKLKAQLKDANRKKAIYTVILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   +I   ++
Sbjct: 405 EQEAVSETTIIEKLTN 420


>gi|227543636|ref|ZP_03973685.1| histidyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300908692|ref|ZP_07126155.1| histidine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227186380|gb|EEI66451.1| histidyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300894099|gb|EFK87457.1| histidine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 425

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 137/435 (31%), Gaps = 46/435 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +Q  KG    LP      + V    RE  N+ G   +  P  +   ++        D 
Sbjct: 1   MDYQKPKGTADILPGTTSIWEKVEQNAREVFNQFGYRGIRTPMFEDYHVFSRNVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +       P     Y +   FR E RP+
Sbjct: 61  VEKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF      + +            M ++   +F + G+ ++ +   +  +G   
Sbjct: 120 SG--RQREFHQIGVEALNNESPQIDVEVISMAMA---LFKKFGVPNVKLVINT--LGDKK 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A     +    +   D            + S +   ++  A   +  D  +E+
Sbjct: 173 VREDYREALINYLKPHYDELSKDSQERLYKNPLRVLDSKDEGDKKIVAEAPSILDYLDEE 232

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYV 312
               FD +           E+      G  Y           S      +        Y 
Sbjct: 233 SQAYFDEVQALLNKLGIDFEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYN 292

Query: 313 QMGS-----------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            + S           +G+G  R++  + E +          + AP     +   + DQ  
Sbjct: 293 GLISQLGGPEEGGIGFGMGVERLMLLLQEEN---------PAFAPQDQLDVFFASADQQG 343

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++ +++ + G     D  G ++G Q   A         + G++ V +   ++K+ 
Sbjct: 344 DEMAFEVLSKIRQQGIVADKDYSGVKVGKQIKEAFRRNAKYFAVFGAREVEEGTFQLKNA 403

Query: 422 LTGIREDMSLEEVIN 436
            T     + + + + 
Sbjct: 404 ATKDATTIKISDFVA 418


>gi|326803471|ref|YP_004321289.1| histidine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651350|gb|AEA01533.1| histidine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 432

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 142/442 (32%), Gaps = 52/442 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  KG    LP   +    +    R+   +    E+  P  +S DL+        D 
Sbjct: 1   MIQK-PKGTVDILPGQVEIWQAIEKTARDIMAKYRFNEIRTPMFESYDLFARGVGETTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ I++         P+  Y I   FR E 
Sbjct: 60  VTKEMYDFYDKGDRHIALKP---EGTAPIVRAFIENKLYGPEHIKPYKVYYISPMFRYE- 115

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP+ G  R R+F       FD     S             I   LG+K + +   S  +G
Sbjct: 116 RPQGG--RQRQFHQLGVEVFDGKTALSDVET---IALAWEILESLGVKDLKLVINS--LG 168

Query: 204 GDLSHEFIVLADTG-----ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
            + +      A        E ++        +  P    D  D      + +        
Sbjct: 169 DNEARLNYREALINYLKPFEEELSEDSKTRLYQNPLRVLDSKDPKDKEIVKDAPNILDYL 228

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEV----GHIFYFGTKYSLPMSATFKGAD-------- 306
           +                      I+     G  +Y  T + +  ++   GA+        
Sbjct: 229 SEASKERFEQVQSLLASLNIPYQIDSNMVRGLDYYQDTIFEIMTNSEVFGAETTICGGGS 288

Query: 307 --GKDHYVQMGS-----YGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             G    +  G      +G    M  +  ++E+              P  I ++ I    
Sbjct: 289 YSGLVKELSEGREDVPGFGFAIGMERLILLLEAQKSD-----LAVENPLDIYMVTIG--- 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q       +I   L + G +V +D    +   QF  AD  G    + +G   +++  + +
Sbjct: 341 QSVVSQALQIVQALRRQGLNVEFDLNQRKPKKQFRDADRHGAAYTLTLGESELAEKNINV 400

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           K+  +G     ++++VI +   
Sbjct: 401 KNMTSGQERHFAIDDVIEHFDQ 422


>gi|156937107|ref|YP_001434903.1| anticodon-binding domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566091|gb|ABU81496.1| Anticodon-binding domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 552

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 100/330 (30%), Gaps = 56/330 (16%)

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                    +LPF  ++  L FR+E    F   R++EF +     F  +   +      +
Sbjct: 248 VVEKYADPNDLPFALFEQLLLFREEE-DTFPCYRTKEFHVPKVRIFVPSFSEASDVALTL 306

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                    +LG+K +            +S E    A                       
Sbjct: 307 HELIHTEAEKLGMKYVVSY--------TVSEELFEEA----------------------- 335

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                  +  +V++            NE   D+           +E+G       K    
Sbjct: 336 ----KDLIIKLVKRDNRCAYLRVVKSNEIFIDAEMYVINSMGYPVELGTW-----KMRKA 386

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVI-----ESSHDGKGIIWPDSVAPFKISLI 352
           +        G++ Y       +G+    A VI     +    G+    P  ++P ++ +I
Sbjct: 387 LM------WGREVYSVSA-APLGSFERFAYVIFDKAAKDLKSGETPELPAWLSPIQVRVI 439

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                 +        +   L + G  V  DD    +  +   A     P  +++  +   
Sbjct: 440 P---KSRDVLPYALTVAEELRERGIRVDVDDRNVPLSRKLKDAGEEWVPFLLLIDKREEK 496

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +V +  R T  RED+SLEEVI   S   
Sbjct: 497 LGRVILMRRKTNDREDVSLEEVIRVVSEEV 526


>gi|57641497|ref|YP_183975.1| histidyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|68744300|sp|Q5JIM2|SYH_PYRKO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|57159821|dbj|BAD85751.1| histidyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 436

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 141/443 (31%), Gaps = 57/443 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG    LP        V   IRE        E+  PT +  +L+   SG  +   K++  
Sbjct: 8   KGTRDLLPEEMAKRRWVFERIREVFEGFNFQEVLTPTFEYTELFKLRSG--EEVVKQLYA 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  ++ +  ++    P  +Y I   FR E  P+ G  R REF
Sbjct: 66  FQDKGGRDISLRPDMTSSVARLYVNRFQN-APKPIKWYYIANMFRYEE-PQSG--RYREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                         +      +   + + +  +GL+   +      +  + +    V  D
Sbjct: 122 WQAGVELIGSDRVEADAE---VIALFTQSYLAVGLEDFTVNIGDRILLDEFAKMLGVEDD 178

Query: 216 TGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---- 268
            G  ++   KD M   +F         +D      +                E+LF    
Sbjct: 179 IGLMRLIDKKDKMSREEFVGALREFGLNDDGVEKVLSLIEIKGLPDEVLPKAEELFTSEE 238

Query: 269 ------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----------- 305
                       D L          I++G    F    S+   A                
Sbjct: 239 AKAEIKRLYELVDLLDAYGVSKWVRIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGR 298

Query: 306 --------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    GK        + IG  R++  ++E     KG++    + P  + +I I   
Sbjct: 299 YDNLIEVFGGKPTPA--TGFAIGIERLIP-ILEW----KGLLPEIKLRP-DVYVIPI-GD 349

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+  +    +I   L +       +  G ++      A  LG P  V+VG K +   KV 
Sbjct: 350 DREVKKTAIEITQGLREATVRADIELTGRKLRKALDYAGKLGVPYVVLVGKKDLEAGKVT 409

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           ++   +G ++ +  E  +    +
Sbjct: 410 LRDMKSGEQKSIEKERAVEEILN 432


>gi|212224873|ref|YP_002308109.1| histidyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212009830|gb|ACJ17212.1| histidyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 437

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 142/450 (31%), Gaps = 65/450 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG    LP        V   IR+   R    E+  PT +   L+   SG  +   +++  
Sbjct: 9   KGTRDLLPEEMAKRRWVFERIRDVFERYNFHEILTPTFEYTALFQLRSG--EEVVEQLYA 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  +F +  ++    P  +Y I   FR E  P+ G  R REF
Sbjct: 67  FEDKGGRNLSLRPDMTSSVARLFVNQFQN-APKPVKWYYIANMFRYEE-PQSG--RYREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                         +      +    +  +   GLK   +      +  + +    V  D
Sbjct: 123 WQAGVELIGSDKVEADAE---VIALLVESYLATGLKEFTVNIGDRVLLDEFAKMLGVSDD 179

Query: 216 TGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            G  ++   KD M   DF    +     D      +                E+LF S  
Sbjct: 180 IGLMRLIDKKDKMSREDFIGSLKEFGLSDEGIGKVLALIEIKGKPDDVLPKAEELFTSEK 239

Query: 273 ENKR----------------VSARGIEVGHIFYFGTKYSLPMSATFKGA----------- 305
             +                      I++G    F    S+   A                
Sbjct: 240 AREEIKRLYELVELLKAYGVYDFILIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGR 299

Query: 306 --------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    GK        + IG  R++  ++E     +G+I    + P  + +I I   
Sbjct: 300 YDNLIEVFGGKPTPA--TGFAIGIERLIP-ILEW----RGLIPEPKLRP-DVYVIPIGKE 351

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD----LLGFPLQVIVGSKFVSD 413
            +  R    +I   L K G    +D     +G +   A      LG P  ++VG K +++
Sbjct: 352 LE-LRAKAIEIAQSLRKKGITADYDL----MGRKLKKALDYAGRLGVPYVILVGKKDLAE 406

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            KV I+   +G +  + +E V    S    
Sbjct: 407 GKVTIRDMESGEQIAVKIERVSEELSRLLR 436


>gi|325681020|ref|ZP_08160552.1| histidine--tRNA ligase [Ruminococcus albus 8]
 gi|324107249|gb|EGC01533.1| histidine--tRNA ligase [Ruminococcus albus 8]
          Length = 440

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 129/449 (28%), Gaps = 63/449 (14%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
             MI +  KG    LP        V  +  E   + G  E+ VPT +   L++ S     
Sbjct: 1   MAMIQR-PKGTADMLPAQAYKWHTVEKLAAETAEQYGFKEIRVPTFEDTGLFIRSVGETT 59

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM  ++   D      P     +      +       P   Y I   FR E    
Sbjct: 60  DVVQKEMFTVSATGDDTFTLRPEGTAGVMRAVVENGLLNEAFPQKLYYITSCFRHE---N 116

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
               R REF              +      +      +  R+GL++I +   S       
Sbjct: 117 VQKGRLREFHQFGCEMVGSPDAKADA---DVISLAKSVMDRVGLQNIKLNINSIGCPTCR 173

Query: 201 PIGGDLSHEFIVLA---------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                   E+             D  E       D           D   II        
Sbjct: 174 ANYQKALREYFTPHRDTLCDTCKDRLEKNPMRLLDCKSPICQGIAKDAPLIIDYLCEECD 233

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTKYSL 296
                           FD  P       RG++     +F F             G +Y  
Sbjct: 234 AHFKALQKYLSLMNIDFDINP----RIVRGLDYYTRTVFEFIAEGIGAQSTVCGGGRYDG 289

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            ++       GK        +G+G  R++  + + + D              + + ++  
Sbjct: 290 LLNEL----SGKQVPAL--GFGMGLERLIMTMEQQNCDF------MEAKTCDLYIASMG- 336

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             Q   D    +   L   G  V +D    G +   ++  AD +G    +++G   +   
Sbjct: 337 --QAAADRAMSLAMELRDEGYFVEYDLMGRGIKPQMKY--ADKIGSKFVIVIGDSELESG 392

Query: 415 KVEIKHRLTGIREDMSLEE-VINYASHRF 442
             ++K+  +G + D+ L+   +   S+  
Sbjct: 393 CAKLKNMASGEQTDIKLDNTFVENFSNAL 421


>gi|241889466|ref|ZP_04776766.1| histidyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863862|gb|EER68244.1| histidyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 426

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/449 (14%), Positives = 145/449 (32%), Gaps = 56/449 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP        +   +RE        E+  P  +S +L+        D 
Sbjct: 1   MVISMPRGTQDILPEESIKWQYIEGKLREISKNFCYEEIRTPMFESTELFSRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRF 147
             KEM    D+ ++++   P         +  +    + + P   Y +   FR E + + 
Sbjct: 61  VQKEMYTFQDKGNRSLTLRPEGTAGTVRSYIENKLFAKTIQPQKLYYVGPMFRYERKQK- 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F+    Y  ++  E S     ++      I+   G+++I +   S        
Sbjct: 120 --GRYRQFVQ---YGVEVIGEESPKIDAEVISLAYNIYRMFGIENIKVSINS-------- 166

Query: 208 HEFIVLADTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                L +  E Q +        +  I     D ++ +  N +        A    + + 
Sbjct: 167 -----LGNPEERQAYNEALVKHFEPRINEFCEDCNNRLYKNPMRILDCKVDAGHELIKSA 221

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSL--------------PMSATFKGADGKDHY 311
                    +        + H+   G KY +                       + +   
Sbjct: 222 PKLLDYLGEESKQYFAEVLKHLDALGVKYEIDHNLVRGLDYYTHTAFEIMIDNPEVELKT 281

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-------------PFKISL-INIKAH 357
           +     G G    +  +++   D KGI +  S+              P   ++ + + A 
Sbjct: 282 L----CGGGRYNGLIKLLDGPEDKKGIGFALSIERLLLALESENIELPIDDTIDVFVVAM 337

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +A  K+   L   G  V  D   +++ +Q  +AD       +I+G   +    + 
Sbjct: 338 GEEASNAGVKLTNDLRLAGYSVQNDYFDKKMKAQMKIADRYNAKYSIIIGQSELESGTLV 397

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +K   +  +E + LE +++Y   +    +
Sbjct: 398 VKDMKSFEQEIIKLENIVDYLQEKLRGEK 426


>gi|324991954|gb|EGC23877.1| histidine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324996153|gb|EGC28063.1| histidine--tRNA ligase [Streptococcus sanguinis SK678]
 gi|332363514|gb|EGJ41295.1| histidine--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 426

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 139/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKPSLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADIFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|303233759|ref|ZP_07320413.1| glycine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302495193|gb|EFL54945.1| glycine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 465

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 120/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + N   +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 157 MFKTFQGVTEDNKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 216

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F       +      +  Y R F +  L ++ +R           
Sbjct: 217 FIFRTREFEQMELEFFCKPGTDLE------WFDYWRNFCKEFLLNLGIR----------- 259

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  +        S++ + F   +              +             H+E  
Sbjct: 260 -------EENLRLRDHSQEELSFYSKATTDFEYLFPFGWGELWGIADRTDYDLSKHSEGS 312

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                         +       +GK     +    +G  R+  +
Sbjct: 313 G---------------------------EKLEYMDPTTNGKYIPYCI-EPSVGVDRMFLS 344

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            +  ++D + +             ++A +K++++ +        D   +IY  L+K    
Sbjct: 345 FLCDAYDEEQLEDNTTRTVLKIHPALAAYKVAVLPLTKK---LNDKAMEIYNELAK-NFM 400

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D  G P  V +    + D+ V I+ R T  ++ M++EE+I + 
Sbjct: 401 THFDDAG-SIGKRYRREDEAGTPYCVTIDFDTLEDNTVTIRDRDTMEQKRMTVEEIIEFV 459

Query: 439 SHRFS 443
           +    
Sbjct: 460 NKEME 464


>gi|313678636|ref|YP_004056376.1| glycine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950688|gb|ADR25283.1| glycine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 458

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 126/365 (34%), Gaps = 70/365 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M        +     +   P   + +   F++ ++S R  LP    Q+   FR+E+ P  
Sbjct: 150 MFETKQGIIEGEKNLIYLRPETAQGIFVNFKNVLRSTRAKLPIGIGQVGKSFRNEVTPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    +                           +A+         
Sbjct: 210 FIFRTREFEQMELEVFHDPKDS-----------------DFLFNKYLYKAK--------- 243

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F  L    +  V       D       + +    S    +  +            +  
Sbjct: 244 -DFATLLGIKDENVRIRAHEQDE-----LSHYSSATSDIEYLFPFGWGELLGVANRTDFD 297

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             +  +    S              +Y  P++      + K     +    IG  R++ A
Sbjct: 298 LKAHMQATGES-------------LEYFDPVT------NSKLIPFVI-EPSIGLDRLMLA 337

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++  S+D + I           P SVAP+K +++ +        D  E+IY  L K+   
Sbjct: 338 LLIDSYDEEAISENDSRIVLRMPKSVAPYKFAILPLVKK---LNDKAEEIYKELLKLNIA 394

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + +DD G  IG ++   D +G P  + V    ++D  + I++R + ++E +S+ E+ N A
Sbjct: 395 ITYDDAG-SIGKRYRRQDSIGTPYCITVDYDSLNDECITIRNRDSMLQERISISELYNLA 453

Query: 439 SHRFS 443
            + F 
Sbjct: 454 KNDFK 458


>gi|113955389|ref|YP_729468.1| histidyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123328026|sp|Q0IDK4|SYH_SYNS3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|113882740|gb|ABI47698.1| histidyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 428

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 137/428 (32%), Gaps = 39/428 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP   +    V ++ RE     G  E+  P L+  DL+        D  GKEM  
Sbjct: 9   GMVDLLPEQTRRWQAVESVAREHFRCAGLDEIRTPLLEFTDLFARGIGEGTDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      H           +     FR E RP+ G  R R+F
Sbjct: 69  FLDRGDRSCTLRPEGTASVVRAALQHGLL-SQGAQRLWYGGPMFRYE-RPQAG--RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---LSHEFIV 212
                     +   S      +      +   LG++ + +   S     D      E + 
Sbjct: 125 HQIGVEFLGASSPRSDAE---VIALAWDLLTDLGIQGLNLEINSLGTPDDRQRFRSELVQ 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA--------ATSDVHN 264
             +    Q+           P    D  D  +   + +  T   A               
Sbjct: 182 WLEERVEQLDAESQARLTTNPLRILDSKDKGTQQLLNDAPTLLKALSKESVDRFEQVCAL 241

Query: 265 EKLFDSLPENKRVSARGIE-VGHI------FYFGTKYSLPMSATFKG---ADGKDHYVQM 314
                   +      RG++  GH          G + ++     + G     G      +
Sbjct: 242 LTALQIPYQLNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLIQQLGGPVTPAI 301

Query: 315 GSYGIGAMRV---VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           G + +G  R+   ++A  ++  DG       + +P  + +IN     +        +  +
Sbjct: 302 G-WALGMERLLLVISAAAQADPDGAAARLTATPSPL-VYVIN---RGEQAEPQALSLARQ 356

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMS 430
               G  V  D      G QF  AD  G P  V++G +  S  +V +K  R  G  + ++
Sbjct: 357 WRGAGLAVELDGSSASFGKQFKRADRSGAPWAVVLGDEEASAGQVRLKPLRGEGEEKQLT 416

Query: 431 LEEVINYA 438
            E+ ++Y 
Sbjct: 417 WEDALSYL 424


>gi|296117805|ref|ZP_06836388.1| histidine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969036|gb|EFG82278.1| histidine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 427

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 142/434 (32%), Gaps = 42/434 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           +  KG+  ++P      D V + +  +    G   + +P  +   L+        D   K
Sbjct: 11  KAPKGVPDYVPPQSATFDAVRSTLVGQAYLAGYSHIELPVFEDTTLFARGVGESTDVVSK 70

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADR ++++   P     +      H      LP         FR E RP+ G  R
Sbjct: 71  EMYTFADRGERSVTLRPEGTAGVMRAVIQHNLDRGQLPVKLAYYGPFFRYE-RPQAG--R 127

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+       +  +           +     R +  LGL    +   S       P   +
Sbjct: 128 YRQLQQVGVEAIGVDDPALDAE---VVALADRGYRALGLSEFRLEMTSLGCGNCRPAYRE 184

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF+   D  E     ++      +  +  +  +  +   ++  +            +
Sbjct: 185 KLQEFLFSLDLDEETRHRAEINPLRVLDDKRPEMQEATADAPLMLDYLCEDCREHFETVK 244

Query: 266 KLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYV 312
            L + +     ++ R             E  H    G +  +     + G  A      +
Sbjct: 245 SLLNDMQVPFEINPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQDL 303

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
               +G+G  R V A+     +GK I +  +  A + ++L          +     I   
Sbjct: 304 SGIGFGLGVDRAVLAL---EAEGKSIPVVEERAAVYGVAL------GGEAKKKMVSIVND 354

Query: 372 LSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L   G      + D G + G+    AD  G    +++G + + +  V +K  +   +ED+
Sbjct: 355 LRLAGISTDMSYGDRGLK-GAM-KGADRAGARFALVLGDQELENGTVALKDLVAHEQEDI 412

Query: 430 SLEEVINYASHRFS 443
           +L+ ++   + +  
Sbjct: 413 ALDNIVETLAKKLQ 426


>gi|253574921|ref|ZP_04852261.1| histidyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845967|gb|EES73975.1| histidyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 417

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 138/435 (31%), Gaps = 47/435 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q   G    LP   +    +    R+   R    E+  P  +   L+        D 
Sbjct: 4   MAFQKPTGTQDILPGTVEKWQFIEEKARDLCRRFNYREIRTPIFEQTSLFERGVGETTDI 63

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D++M   P     +   +  +           Y I   FR E RP+ G
Sbjct: 64  VEKEMYTFLDKGDRSMTLRPEGTAGVVRSYVENKMYGEPDVSKLYYIGPMFRYE-RPQAG 122

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------- 199
             R R+F      +F             +   + R    LGL+ + +   S         
Sbjct: 123 --RQRQFHQFGVEAFGAIDPAIDAEVVALGYQFCR---ELGLQGVKVEINSVGNPSSRAA 177

Query: 200 ---------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT----DFDDIISLN 246
                     P+   L  +     +    +V   K   D    + +     D +      
Sbjct: 178 YREKLLEFLLPMKDSLCKDCQARIERNPLRVLDCKTDQDKFDGAPSILDSLDEECTTHFA 237

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKG 304
            + E  +A                   +     +   +G I     G +Y+  + A   G
Sbjct: 238 KVQELLSAMEIDYEINPRLVRGLDYYTHTAFEYKAQGIGAIDTIGGGGRYN-GLVAEVGG 296

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D       MG      +  +A ++E      G     +V P  + LI +    +  ++ 
Sbjct: 297 PDQPGIGFGMG------LERIALILEKQEIELG-----AVKPLDVYLIALGEAAE--KEI 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++ +L + G     D +G ++ +Q   AD +      I+G   +   ++ +K   +G
Sbjct: 344 TTQLF-KLRQAGFSAERDYLGRKMKAQMKSADRMQARYTAILGDDELQRGEIALKSMDSG 402

Query: 425 IREDMSLEEVINYAS 439
            +  + L E++N   
Sbjct: 403 EQRTVKLSELLNELQ 417


>gi|228476564|ref|ZP_04061246.1| seryl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228251759|gb|EEK10824.1| seryl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 425

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  EM  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKGLGAKLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPEDSYDELEKMVVNAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|194467292|ref|ZP_03073279.1| histidyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194454328|gb|EDX43225.1| histidyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 425

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 137/435 (31%), Gaps = 46/435 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +Q  KG    LP      + V    RE  N+ G   +  P  +   ++        D 
Sbjct: 1   MDYQKPKGTADILPGTTSIWEKVEQNAREVFNQFGYRGIRTPMFEDYHVFSRNVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +       P     Y +   FR E RP+
Sbjct: 61  VEKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF      + +            M ++   +F + G+ ++ +   +  +G   
Sbjct: 120 SG--RQREFHQIGVEALNNESPQIDVEVISMAMA---LFKKFGVPNVKLVINT--LGDKK 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E    A     +    +   D            + S +   ++  A   +  D  +E+
Sbjct: 173 VREDYREALINYLKPHYDELSKDSQERLYKNPLRVLDSKDEGDKKIVAEAPSILDYLDEE 232

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYV 312
               FD +           E+      G  Y           S      +        Y 
Sbjct: 233 SQAYFDEVQALLNKLGIDFEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYN 292

Query: 313 QMGS-----------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            + S           +G+G  R++  + E +          + AP     +   + DQ  
Sbjct: 293 GLISQLGGPEEGGIGFGMGVERLMLLLQEEN---------PAFAPQDQLDVFFASADQQG 343

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++ +++ + G     D  G ++G Q   A         + G++ V +   ++K+ 
Sbjct: 344 DEMAFEVLSKVREQGIVADKDYSGVKVGKQIKEAFRRNAKYFAVFGAREVEEGTFQLKNA 403

Query: 422 LTGIREDMSLEEVIN 436
            T     + + + + 
Sbjct: 404 ATKDATTIKVSDFVA 418


>gi|262305729|gb|ACY45457.1| glu- + pro-tRNA synthetase [Eumesocampa frigilis]
          Length = 133

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S RGI+ G   + G  +S   +  F+   G   +    S+G+ + R + A++    D KG
Sbjct: 15  SGRGIQGGTSHHLGQNFSKMFNICFEDEKGDKQFAFQNSWGL-STRTIGAMVMIHGDNKG 73

Query: 338 IIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
           ++ P  VA +++ +I          A  +    +CE I  RL K    V  D       G
Sbjct: 74  LVLPPQVACYQVVIIPCGVTATMSSAEKESLLKSCELIQERLQKSHIRVRGDFRDNYSPG 133


>gi|183220295|ref|YP_001838291.1| glycyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778717|gb|ABZ97015.1| Glycyl-tRNA synthetase (Glycine--tRNA ligase; GlyRS) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 494

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 87/487 (17%), Positives = 165/487 (33%), Gaps = 80/487 (16%)

Query: 13  ENPRDAEIASHKLML----RTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE-- 60
             P++ E  S K ++    R G +   S+   G+   + + P G + L+N+  +  E   
Sbjct: 30  AQPKEKEEQSLKPIVAVSKRRGFVFPGSEIYGGLSNTFDYGPNGIEVLNNLKRLWWEYFV 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-------------RLADRNDKAMIYG 107
             R   + +    L    +W  SG   ++   ++              L D+  +    G
Sbjct: 90  HRRDDVLGLDSSILLHPRVWEASGHISNFNDPLMDCKKCKTRVRVDKFLEDKEGEGAATG 149

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLT 166
            T EE+ T+  R             Y              G    +R+F +    S   +
Sbjct: 150 KTLEEL-TNTIRDKA----------YACPTC------GTVGSFTDARQFNLMFKTSHGAS 192

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG------PIGGDLSHEFIVLADTGETQ 220
            EG+   Y +   +   IF  +  K++   A          IG    +E +       T+
Sbjct: 193 EEGATDIYLR-PETAQGIF--INFKNVTQIARKKVPFGIAQIGKSFRNEIMARQFIFRTR 249

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   +   F  P    ++        +            ++   +           S  
Sbjct: 250 EFEQMEMEFFCEPGTQKEWFKYWVDYCMDWLVNVVGLKKENLRVREHEKEELSFYSDSTS 309

Query: 281 GIEVGHIFYFG--------TKYSLPMSATFKGADGKDH--------YVQMGSYGIGAMRV 324
            IE  + F +G        T Y L    TF   D K H           +    +G  R+
Sbjct: 310 DIEYKYPFGWGELWGVASRTDYDLTQHETFSSEDLKYHDLDQKKKYLPYVVEPALGLNRL 369

Query: 325 VAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             AV+  +++ + +          +   V+P K+++  +   D       ++IY  L   
Sbjct: 370 FLAVLCDAYEEEKLEKDDIRTVLRFGKRVSPMKVAIFPLMKKD-GLDAKAKEIYTDLRNH 428

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V +DD G  IG ++   D +G P  + V    +SD  V I+ R +  +E +++ ++ 
Sbjct: 429 WY-VDYDDSGA-IGKRYRRHDEIGTPFCITVDYDTMSDGTVTIRERDSMKQERIAVADLK 486

Query: 436 NYASHRF 442
           +Y   R 
Sbjct: 487 SYLIQRM 493


>gi|15669189|ref|NP_247994.1| histidyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2501004|sp|Q58406|SYH_METJA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1591660|gb|AAB99003.1| histidyl-tRNA synthetase (hisS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 416

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 143/430 (33%), Gaps = 41/430 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           + Q  +G   +LP   K    V   +RE   R G  E+  PT +S +L   ++G  +   
Sbjct: 4   MFQKPRGTRDFLPEEMKKRRFVENKLREVFERYGYKEILTPTFESFELIAKKTG--EEIR 61

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K++    D   + M   P     +   + + +K+    P   Y     FR E RP+ G  
Sbjct: 62  KQLYVFKDHGGREMALRPEMTSPVVRFYLNELKN-LQKPLRLYYFANCFRYE-RPQAG-- 117

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-----D 205
           R REF              +      +    +     +GL         G + G     +
Sbjct: 118 RFREFWQMGCELIGCKEPLADAE---VLNLAMDGLINIGLDFDVHIGHLGVLKGVLEKFN 174

Query: 206 LSHEFIVL-------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +S E  V         D    +++ ++   +              S   + E        
Sbjct: 175 VSEEEEVKIRRLIDKEDYDNLKIYLTQILGEEKKELIFEILKFKGSREVLDELKEILKDF 234

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              +      + + E        I +G     G  Y   M     G  G       G Y 
Sbjct: 235 PKSMEAINNLEEILEFVIHDKYTINLGIAR--GLDYYTGMVFEIYGKKGAKQICGGGRYD 292

Query: 319 IGAMRVVAA----VIESSHDGKGIIWPDS---VAPFKISLINIKAHDQVCRDACEKIYAR 371
              +          +  ++    I+       +    I +I +K   ++ +     I  +
Sbjct: 293 -NLIETFGGEPTPAVGFAYGFDRIMMNIDDLDIEEESILIIPVKKDKELIK-KSLIIADK 350

Query: 372 LSKVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           L K G  V      E +G +       A+  GF   +IVG K +++ KV +K  +TG ++
Sbjct: 351 LRKAGKIVEL----EIMGRKLRKALDYANSRGFKKVIIVGEKELNEGKVTVKDMITGEQK 406

Query: 428 DMSLEEVINY 437
            + ++E+ N+
Sbjct: 407 LIGIDELTNF 416


>gi|225016790|ref|ZP_03705982.1| hypothetical protein CLOSTMETH_00702 [Clostridium methylpentosum
           DSM 5476]
 gi|224950458|gb|EEG31667.1| hypothetical protein CLOSTMETH_00702 [Clostridium methylpentosum
           DSM 5476]
          Length = 439

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 157/445 (35%), Gaps = 51/445 (11%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-- 83
           M +  ++ +  +G    LP        +  +  +     G  E+ VPT +  +L+  S  
Sbjct: 1   MNKMKLLTKAPRGTQDTLPSESHKWQFIENLALDTARLYGFREIRVPTFEHTELFKRSVG 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              D   KEM    DR  +++   P            +      LP     +   FR+E 
Sbjct: 61  DTTDVVQKEMFTFEDRGGRSLSLRPEGTAGTVRAALENGLLGDALPVKLSYVVSCFRNE- 119

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R +EF       F     G+      +      IF +LG++++ ++  S    
Sbjct: 120 RPQAG--RFKEFHQFGVEMFGAAAPGADAEVIGVAN---DIFEQLGIQNLELQINSIGCP 174

Query: 200 -------GPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVEQ 251
                    +    S     L  T E ++  +    +D  +P       D   +   +  
Sbjct: 175 ECRAKYQQALKDYFSAHLGTLCGTCEERLEKNPMRLLDCKVPECAEIAKDAPVILDYICN 234

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTKYSL 296
               +   + V+ + +  +   N R   RG++     +F F             G +Y  
Sbjct: 235 DCRKHFELTKVNLQAMGIAFVVNPR-IVRGLDYYTRTVFEFVSNDLGAQSTVCGGGRY-- 291

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                 +   GK        + +G  R++  +     D +GI  P   +P    L     
Sbjct: 292 --DGLVETLGGKPTPAL--GFAMGLERLLMIL-----DKQGIELP---SPQSCDLYIASI 339

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            ++    A  ++ + L K G  V +D +G  + +Q   AD LG  L +++G   VS  K 
Sbjct: 340 GEEAALKAA-QLTSLLRKEGFFVEFDTVGRSLKAQMKYADKLGAKLSMVIGDDEVSSCKA 398

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           ++K    G  +++  +++      +
Sbjct: 399 KLKDMGDGETKEVEFKDLPEAVYQK 423


>gi|240102364|ref|YP_002958672.1| histidyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|239909917|gb|ACS32808.1| Histidyl-tRNA synthetase (hisS) [Thermococcus gammatolerans EJ3]
          Length = 435

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 139/442 (31%), Gaps = 65/442 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP        V   IRE   R    E+  PT +  +L+   SG  +   K++  
Sbjct: 7   KGTRDFLPEEMAKRRWVFERIREVFERYNFHEVLTPTFEYTELFKLRSG--EEVVKQLYA 64

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  ++ S  +     P  +Y I   FR E  P+ G  R REF
Sbjct: 65  FLDKGGRDISLRPDMTSSVARLYVSAFQ-TAPKPIKWYYIANMFRYEE-PQSG--RFREF 120

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                         +      +   +   +   GL+   +      +  + +    V  D
Sbjct: 121 WQAGVELIGSDKVEADAE---VIALFTESYLATGLEDFTVNIGDRVLLDEFAKMLGVKDD 177

Query: 216 TGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---- 268
            G  ++   KD     +F    ++    D      +                E+LF    
Sbjct: 178 IGLMRLIDKKDKLTQEEFVKALKDFGLSDEDVEKVLSLVEIKGEPDEVLPKAEELFTSEK 237

Query: 269 ------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----------- 305
                       D L          I++G    F    S+   A                
Sbjct: 238 AKAEIRRLYELVDLLDAYGVSKWIRIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGR 297

Query: 306 --------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    GK        + IG  R++  ++E     KG+I    + P  + +I I   
Sbjct: 298 YDNLIEVFGGKPTPA--TGFAIGIERLIP-ILEW----KGLIPEIRLRP-DVYVIPI-GK 348

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA-DLLG---FPLQVIVGSKFVSD 413
           D   R    ++ + L + G         E  G +   A D  G    P  V++G + + +
Sbjct: 349 DVELRKTAVEVVSALRRAGVKADV----ELTGRKLRKALDHAGRLNVPYVVLIGKRDLEN 404

Query: 414 SKVEIKHRLTGIREDMSLEEVI 435
             V I+   TG +  +  E ++
Sbjct: 405 GNVTIRDMETGEQRVVKKEGIV 426


>gi|189910413|ref|YP_001961968.1| glycyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775089|gb|ABZ93390.1| Glycine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
          Length = 466

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 87/487 (17%), Positives = 165/487 (33%), Gaps = 80/487 (16%)

Query: 13  ENPRDAEIASHKLML----RTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE-- 60
             P++ E  S K ++    R G +   S+   G+   + + P G + L+N+  +  E   
Sbjct: 2   AQPKEKEEQSLKPIVAVSKRRGFVFPGSEIYGGLSNTFDYGPNGIEVLNNLKRLWWEYFV 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-------------RLADRNDKAMIYG 107
             R   + +    L    +W  SG   ++   ++              L D+  +    G
Sbjct: 62  HRRDDVLGLDSSILLHPRVWEASGHISNFNDPLMDCKKCKTRVRVDKFLEDKEGEGAATG 121

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAYSFDLT 166
            T EE+ T+  R             Y              G    +R+F +    S   +
Sbjct: 122 KTLEEL-TNTIRDKA----------YACPTC------GTVGSFTDARQFNLMFKTSHGAS 164

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG------PIGGDLSHEFIVLADTGETQ 220
            EG+   Y +   +   IF  +  K++   A          IG    +E +       T+
Sbjct: 165 EEGATDIYLR-PETAQGIF--INFKNVTQIARKKVPFGIAQIGKSFRNEIMARQFIFRTR 221

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            F   +   F  P    ++        +            ++   +           S  
Sbjct: 222 EFEQMEMEFFCEPGTQKEWFKYWVDYCMDWLVNVVGLKKENLRVREHEKEELSFYSDSTS 281

Query: 281 GIEVGHIFYFG--------TKYSLPMSATFKGADGKDH--------YVQMGSYGIGAMRV 324
            IE  + F +G        T Y L    TF   D K H           +    +G  R+
Sbjct: 282 DIEYKYPFGWGELWGVASRTDYDLTQHETFSSEDLKYHDLDQKKKYLPYVVEPALGLNRL 341

Query: 325 VAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             AV+  +++ + +          +   V+P K+++  +   D       ++IY  L   
Sbjct: 342 FLAVLCDAYEEEKLEKDDIRTVLRFGKRVSPMKVAIFPLMKKD-GLDAKAKEIYTDLRNH 400

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V +DD G  IG ++   D +G P  + V    +SD  V I+ R +  +E +++ ++ 
Sbjct: 401 WY-VDYDDSGA-IGKRYRRHDEIGTPFCITVDYDTMSDGTVTIRERDSMKQERIAVADLK 458

Query: 436 NYASHRF 442
           +Y   R 
Sbjct: 459 SYLIQRM 465


>gi|237734398|ref|ZP_04564879.1| glycyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|229382628|gb|EEO32719.1| glycyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 457

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 120/365 (32%), Gaps = 73/365 (20%)

Query: 93  ML-----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       + D  D   +   T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 149 MFETQMGVVEDAKDVVYLRPETAQGIFVNFKNIQRTSRKKVPFGIGQIGKAFRNEITPGN 208

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F   P+     ++       +    LGLK   +R           
Sbjct: 209 FIFRMREFEQMELEFF-CKPDTDLEWFDYWKSYCQKFLFDLGLKEENLRFRD-------- 259

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE        E   F SK   D                      +               
Sbjct: 260 HE-------KEELSFYSKATCDVEYN----------------FPFGWGELWGIADRTNYD 296

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
                 + + S                       +      + +   +    +GA R+  
Sbjct: 297 LTQHQNHSKKS---------------------LEYLDPTTNEKYIPYVIEPSVGADRLFL 335

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           +V+  S++ + +             SVAPFK++++ +        D   +IY++L+K   
Sbjct: 336 SVLCDSYEEEILEDGETRVVMKLHPSVAPFKVAILPLTKKQS---DKATEIYSQLAKY-F 391

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +D  G+ IG ++   D +G P  V V    + D  V ++ R T  +  + + ++++Y
Sbjct: 392 NCEYDVAGQ-IGKRYRRQDAIGTPYCVTVDFDTMEDETVTVRDRDTMEQIRLPINQLVDY 450

Query: 438 ASHRF 442
            S + 
Sbjct: 451 ISKKI 455


>gi|312277730|gb|ADQ62387.1| Seryl-tRNA synthetase [Streptococcus thermophilus ND03]
          Length = 425

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  EM  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPEDSYDELEKMVVNAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|254166523|ref|ZP_04873377.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289596411|ref|YP_003483107.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197624133|gb|EDY36694.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534198|gb|ADD08545.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 557

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 131/412 (31%), Gaps = 63/412 (15%)

Query: 93  MLRLADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M       DK     P T + +  +    +  +   LP    QI   FR+E+ PR G++R
Sbjct: 144 MFSTTVGLDKRAFLRPETAQGIFVNFPIMYRLNREKLPLGVAQIGKGFRNEISPRQGLLR 203

Query: 152 SREFLMKDAY-SFDLTPEGSKHSYNKM--------------------------------F 178
            REF M +     D   E   ++   +                                 
Sbjct: 204 LREFNMAEIELFVDPYDEDILNNLEDVNLHLLTREGEELNLSPKEAVERKLMNAHIGYYM 263

Query: 179 VSYLRIFHRLGLKSIPMRA----------------ESGPIGGDLSHEFIVLADTGETQVF 222
              ++    LG+    +R                 +   +      E   +AD G+  + 
Sbjct: 264 AKIVKFLDALGIDLNRVRFRQHFKEELAHYSRDTWDCEILLSSGWVEVTGIADRGDYDLK 323

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSI---VEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
               +    + +     +             +   P          ++ +S+        
Sbjct: 324 RHMTYSGRDLTAIRRFKEPKKIKIKKLRARMEILGPMFKKDAKKIAEILESMEYVDGNIE 383

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-- 337
             IE  ++      Y + +     G  G+     +     G  R++ AV+E S   +   
Sbjct: 384 IEIEGKNVKIPRDAYEIKIEEEVIG--GERFVPHVIEPSFGIDRILYAVLEHSFYEREDT 441

Query: 338 ----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               +     +AP K+++  + A D         +  ++ + G   ++DD G  IG ++A
Sbjct: 442 GYKVLKLKPKIAPIKVAIFPLMAKD-GLDAVARDVLNKIREGGITSYYDDSG-SIGRRYA 499

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            AD +G P  + V  + + D+ V I+ R +  ++ + ++ +           
Sbjct: 500 RADEIGVPFCITVDYESLKDNTVTIRERDSAKQKRVRIDAIPKILEDLVDER 551


>gi|328945234|gb|EGG39388.1| histidine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 426

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 138/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKPSLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 TYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  +           
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGTG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADIFKAKTLITLGESEVESGQVTVKNNYNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|77164419|ref|YP_342944.1| histidyl-tRNA synthetase, class IIA [Nitrosococcus oceani ATCC
           19707]
 gi|254433972|ref|ZP_05047480.1| histidyl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|76882733|gb|ABA57414.1| histidyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207090305|gb|EDZ67576.1| histidyl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 423

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 134/439 (30%), Gaps = 48/439 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  ++       G  E+ +P L+  +L+  S G   D   K
Sbjct: 5   QAIRGMNDLLPNQTPHWQRVEEVLSRVLASYGYQEIRLPLLEPTELFRRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H       P   +     FR E RP+ G  R
Sbjct: 65  EMYTFIDRNGDSLTLRPEGTAGCVRSILQHGLLT-QGPLRLWYYGPMFRHE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHE 209
            R+F                     M     R + RLGL+ + ++  S   P       E
Sbjct: 121 YRQFYQIGVEVLGTKGPDVDAELILM---TARFWRRLGLQDLRLQLNSLGSPAARIAYRE 177

Query: 210 FIVLADTGETQVFCSKDFMDFPIP------SENTDFDDIISLNSI---VEQWTAPYAATS 260
            +V   T    V                  S+N    +II             +     +
Sbjct: 178 RLVDFFTAHEDVLDEDSRRRLHSNPLRILDSKNPALQEIIEQAPQLLDYLDDDSRTHFEA 237

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--AD--GKD 309
             H     D   +      RG++              G++ ++     + G      G+ 
Sbjct: 238 LRHTLDSADIAYKINPRLVRGLDYYTRTVFEWVSDQLGSQGTVCAGGRYDGLVEQLGGQS 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACE 366
                 + G+     + A++      K        AP    L  +    Q  R+     E
Sbjct: 298 IPAVGFALGLD---RLVALLGEQGRLK--------APIPADLYLVAVGPQAERESLLFAE 346

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI- 425
           ++   +      V +   G    SQ   AD  G    +I+G   +    V +K    G  
Sbjct: 347 RLREAIPAARLQVNY--GGGSFKSQLKRADRSGARWALILGEDEIVQGTVSVKDLRQGQP 404

Query: 426 REDMSLEEVINYASHRFSN 444
           +E +S +++ +Y   +  +
Sbjct: 405 QELVSQDKLSDYIKQQLQS 423


>gi|18311446|ref|NP_563380.1| glycyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|110798906|ref|YP_697152.1| glycyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|110803756|ref|YP_699720.1| glycyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|168206859|ref|ZP_02632864.1| glycyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168211214|ref|ZP_02636839.1| glycyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|168215148|ref|ZP_02640773.1| glycyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168218224|ref|ZP_02643849.1| glycyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|169343166|ref|ZP_02864187.1| glycyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|182625996|ref|ZP_02953759.1| glycyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|59798596|sp|Q8XHL9|SYG_CLOPE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|18146130|dbj|BAB82170.1| glycine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110673553|gb|ABG82540.1| glycyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|110684257|gb|ABG87627.1| glycine--tRNA ligase [Clostridium perfringens SM101]
 gi|169298718|gb|EDS80794.1| glycyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|170661742|gb|EDT14425.1| glycyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170710778|gb|EDT22960.1| glycyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170713451|gb|EDT25633.1| glycyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177908703|gb|EDT71214.1| glycyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182379763|gb|EDT77242.1| glycyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 467

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 114/357 (31%), Gaps = 51/357 (14%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D  ++  +   T + +  +       + + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGITEDSKNEVYLRPETAQGIFVNFKSVQRTTRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N    S       LG+K   +R     +     
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFNFWKDSCWNFLLNLGMKEENIR-----MRDHGE 268

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        S     FP            +   + +         + +     
Sbjct: 269 EELSFYSN------ATSDIEYLFPFGWGELWGIADRTDYDLNKHAEHSGQDMTYLDPTTN 322

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVA 326
              +P     S     V   F     Y        +GA+GK D    M            
Sbjct: 323 EKYVPYVIEPSLGADRVALAF-LVEAYDEE---ELEGANGKVDVRTVMH----------- 367

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                           ++APFK +++ +        +  +++YA LSK   +V +D+ G 
Sbjct: 368 -------------LHPALAPFKAAILPLSKK---LSEKADEVYAELSKH-FNVDYDETG- 409

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  + V    + D  V ++ R    ++ + +E+V         
Sbjct: 410 SIGKRYRRQDEIGTPFCITVDFDTLEDGCVTVRDRDNMEQQRVKIEDVRAIIEKSLE 466


>gi|312862541|ref|ZP_07722783.1| serine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311101946|gb|EFQ60147.1| serine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 425

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  EM  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKGLGAKLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPESSYDELEKMVVNAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|315142798|gb|ADT80974.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNSGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREXSIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|116627246|ref|YP_819865.1| seryl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|122268151|sp|Q03MA3|SYS_STRTD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116100523|gb|ABJ65669.1| seryl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 425

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  EM  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPEDSYDELEKMVVNAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|161611297|ref|YP_138864.2| seryl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|161936380|ref|YP_140747.2| seryl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 425

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  EM  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPEDSYDELEKMVVNAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|322373920|ref|ZP_08048455.1| serine--tRNA ligase [Streptococcus sp. C150]
 gi|321277292|gb|EFX54362.1| serine--tRNA ligase [Streptococcus sp. C150]
          Length = 425

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  EM  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKGLGAKLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPESSYDELEKMVVNAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|312134503|ref|YP_004001841.1| histidyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774554|gb|ADQ04041.1| histidyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 421

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 138/431 (32%), Gaps = 33/431 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    LP        V    RE     G  E+  PT +  +++        D   K
Sbjct: 4   QAPKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTEVFQRGVGETTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P        +F  H  + R +P  F+ I   FR E     G  R
Sbjct: 64  EMYTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFFYIISAFRYE--NTQG-GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-HEF 210
            REF      +F  +   +      +       F  +GL +I +   S  IG  +   E+
Sbjct: 121 FREFHQFGIENFGSSSPVTDAE---VISLAYNFFTSIGLDNITVNINS--IGCPVCRKEY 175

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +        + F +  +       +  D + +  L+   E             +    D 
Sbjct: 176 M----KNLKEYFSANLYKLCTTCHQRFDKNPMRILDCKEENCKLIAKDAPKPIDYLCDDC 231

Query: 271 LPENKRVSARGIEVGHIFYF-------GTKY--SLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++V    ++   + Y        G  Y             D +      G Y    
Sbjct: 232 KNHFEKVKTY-LDSAMVAYKVDPFIVRGLDYYTRTVFEVVVTVLDKELAICGGGRYDNLI 290

Query: 322 MRV----VAAVIESSHDGKGIIWPDSV----APFKISLINIKAHDQVCRDACEKIYARLS 373
            ++    +A +  +    + ++  +      A  +I  + +            +I  +L 
Sbjct: 291 EQIGGPSIAGIGFAIGVERLLMLLEQNGLLPAKPQIPEVFVAVVGDNSIKKAFEIANKLR 350

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     ++M   + SQ   AD +G    +I+G   ++    +I++  T   E + ++ 
Sbjct: 351 FEGISTVIEEMSRSLKSQMKYADKIGCQFSIIIGDDEIAKGVCKIRNMRTSSEEIVEIKN 410

Query: 434 VINYASHRFSN 444
             +Y   +   
Sbjct: 411 ACHYLKKQLQK 421


>gi|281208581|gb|EFA82757.1| glycyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 643

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 133/397 (33%), Gaps = 80/397 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD--------------------LTP 167
           LPF   QI   FR+E+ PR G++R REF M +   F                     LT 
Sbjct: 232 LPFAAAQIGNSFRNEIAPRSGLLRVREFTMAEIEHFVHPDRKAHPKFCDVATLKTNLLTA 291

Query: 168 EG----------------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
           E                 +K   N   ++Y     +L L ++ ++ E        S+E  
Sbjct: 292 EAQGTTKMVVEMNFGEAVAKGIINNETLAYFMARTQLFLHTVGIKPERMRFRQHQSNEMA 351

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              AD  + ++  S  +++    ++ + +D  +                         D 
Sbjct: 352 HYAADCWDAEIHTSYGWVECVGHADRSCYDLKVHSEKSQVPLVVFEEFKDGPKMVDTIDV 411

Query: 271 LPENKRV-----------------SARGIEVGHIF------------------YFGTKYS 295
                 +                  +   E G  F                  Y  TK  
Sbjct: 412 KMNKGLMGKTFKATAKEPMDFLDSLSNDFEAGLTFKERLDTDGQAVINVNTNQYTITKEM 471

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-----DGKGIIW--PDSVAPFK 348
           + ++ T K   G+ +   +     G  R++ ++IE ++     D +  +   P  +AP K
Sbjct: 472 VTLTKTQKKISGESYQPHVIEPSFGLGRIIYSLIEHAYWVREGDEQRCVLSLPAIIAPVK 531

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            S++ +  + ++      +I   L + G     DD G  IG ++A  D +G P  + +  
Sbjct: 532 ASILPLIGNAELA-PFVHRINRLLKEAGISCKVDDSGSAIGRRYARTDEIGIPFGITIDF 590

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + D  V ++ R T  +  + + +V         NN
Sbjct: 591 DTLKDDTVTLRERDTTKQVRIPISDVTQTLKQLCENN 627



 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 11/105 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNA 55
           + S    P  +E    A +    LM R   I           G+Y + P G     N+  
Sbjct: 19  KMSISTTPTTKEPNVRAGVED--LMKRRFFITPAFQIYGGVAGLYDYGPPGCAIKANLIN 76

Query: 56  IIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
             R+        +E+    L    +   SG    +      + D 
Sbjct: 77  FWRQHFALNEDMLEVDCTALTPEIVLKTSGHVAKFAD--FMVKDE 119


>gi|262043501|ref|ZP_06016622.1| tetraacyldisaccharide 4'-kinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039164|gb|EEW40314.1| tetraacyldisaccharide 4'-kinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 123

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++   + GK   W   ++P +  ++ I           E++   L K G     D
Sbjct: 2   ERFTGILLEHYVGKLPAW---LSPVQAVVMTITDKQHH---YAEQVLKALRKKGLRCEAD 55

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              E+IG +     L   P  +IVG    + ++V ++ R       + L E  +   
Sbjct: 56  LRNEKIGFKIREQTLARIPFLLIVGDAEENAARVTVRDRTGRCMGTLLLNEAADAIK 112


>gi|300361855|ref|ZP_07058032.1| histidine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300354474|gb|EFJ70345.1| histidine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 428

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 144/437 (32%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    + + V  I R    R    E+  P+ ++ +++  S     D   K
Sbjct: 4   QRPKGTVDILPADSGSWEKVETIARNFFKRANYREIRTPSFENYEVFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     ++  PF  Y I   FR E RP+ G 
Sbjct: 64  EMYDFNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFNVYYIDNTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSNSPLADVETIMMG---HDLLAELGVKNYELHINTLGNAQVRKDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK   D     +     D +  +S    
Sbjct: 178 HDALVNYFTPLKDQLSEDSQRRLSMNPLRILDSKADEDKQFLPDAPRIVDYLDEDSKKNF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            T          N  L D            + E         E       G +Y+     
Sbjct: 238 ETITDMLEQLGINYVLDDDLVRGLDYYTGVIFEFMVEDKNLWESATTILGGGRYNH---- 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
             +  DG +       +GIG  R++  + E +    + +GI            + NI   
Sbjct: 294 LVEEFDGPETPAV--GFGIGEERLMLVLKEQNPALFEDEGI---------DFFITNIGEG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            ++      +I   L K G    +D   +++  QF  AD +     + +G+K + +  + 
Sbjct: 343 TEM---KAVEIARSLRKQGFKAQYDVDQKKLKQQFRKADRVHAKFVITLGAKELENGVLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SLE++
Sbjct: 400 IKRLADGKTLDLSLEDL 416


>gi|169351083|ref|ZP_02868021.1| hypothetical protein CLOSPI_01862 [Clostridium spiroforme DSM 1552]
 gi|169292145|gb|EDS74278.1| hypothetical protein CLOSPI_01862 [Clostridium spiroforme DSM 1552]
          Length = 457

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 120/366 (32%), Gaps = 75/366 (20%)

Query: 93  ML-----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       + D      +   T + +  +       + + +PF   QI   FR+E+ P  
Sbjct: 149 MFETKMGVVEDAKSTVYLRPETAQGIFVNFKNIQRTTRKKVPFGIGQIGKAFRNEITPGN 208

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            + R REF   +   F       +   Y K +    +    LG+K   +R          
Sbjct: 209 FIFRMREFEQMELEFFCKPGTDLEWFEYWKDYC--KKFLKDLGIKDENLRFRD------- 259

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            HE        E   F SK   D                      +            + 
Sbjct: 260 -HE-------KEELSFYSKGTCDVEYN----------------FPFGWGELWGIADRTDY 295

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVV 325
                  + + S                       +      + +   +    +GA R+ 
Sbjct: 296 DLTQHQNHSKKS---------------------LEYLDPTTNEKYIPYVIEPSVGADRLF 334

Query: 326 AAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            +V+  S++ + +             ++AP+K++++ +        D   ++Y+ L+K  
Sbjct: 335 LSVLCDSYEEETLEDGETRVVMKLLPALAPYKVAILPLTKKQS---DKASEVYSMLAKH- 390

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +D  G+ IG ++   D +G P  V V    + D+ V ++ R T  +  + ++E+++
Sbjct: 391 FSCEFDVAGQ-IGKRYRRQDAIGTPFCVTVDFDTLEDNTVTVRDRDTMEQIRLPIDELVD 449

Query: 437 YASHRF 442
           Y S + 
Sbjct: 450 YISKKV 455


>gi|149178521|ref|ZP_01857109.1| glycyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148842636|gb|EDL57011.1| glycyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 555

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 116/369 (31%), Gaps = 47/369 (12%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +         +      P   + M   F++ + S R  +PF   QI   FR+E+ PR 
Sbjct: 213 MFKTIIGALSGEEGTAFLRPETAQGMFVNFKNVVDSGRVKVPFGIAQIGKSFRNEITPRN 272

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-RAESGPIGGDL 206
            + RSREF   +   F    E         F  Y     R     I    AE   I  D 
Sbjct: 273 YIFRSREFEQMEMEFFCHPDES--------FEWYQYWRDRRYAWYIKHGIAEDNLILRDH 324

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + E +     G   V  +  FM+     E          +               +  EK
Sbjct: 325 TQEELAHYSVGTADVEYAFPFMEENEYGELEGIAHRGDFDLRSHMEGKLVREGDQLVVEK 384

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                P+ K                   S      F     +     +     GA R   
Sbjct: 385 NEHGQPKYKG------------------SGKDLTYFDDQTRERFIPHVIEPAAGADRATL 426

Query: 327 AVIESSH------DGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           A +  ++      D KG       + +   +AP K ++  +        +    IY RL 
Sbjct: 427 AFLCEAYYEDEQPDEKGNMQTRTVMRFHPRLAPVKAAVFPL-IKKAGMPEIASSIYQRLK 485

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G    +D  G  IG ++   D +G P  + V  +   D+ V ++ R T  +  + +++
Sbjct: 486 SAGIQAVYDQQGA-IGRRYRRQDEIGTPFCLTVDGETEQDNCVTLRDRDTLEQVRIPIDD 544

Query: 434 VINYASHRF 442
           V+     R 
Sbjct: 545 VVTEIHKRI 553


>gi|86608180|ref|YP_476942.1| histidyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556722|gb|ABD01679.1| histidyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 432

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 142/436 (32%), Gaps = 45/436 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDS 88
           MI Q  +G    LP   +    V A  RE   R    E+  P L+  +L+  S G   D 
Sbjct: 3   MI-QAVRGTRDILPQEVRLWQQVEASAREILGRANYQEIRTPILELTELFARSIGSATDV 61

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            GKEM   + R ++ +   P +   +   +  H           +     FR E RP+ G
Sbjct: 62  VGKEMYSFSTRGEQEVSLRPENTAGVVRAYIQHGLQTAGDVQRLWYCGPMFRYE-RPQAG 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-------ESGP 201
             R R+F              +      +      +   +G +++ +R        +   
Sbjct: 121 --RQRQFHQLGVELLGSRDPRADAE---VIALAWELLQAVGAENLSLRLNSLGDLQDRRA 175

Query: 202 IGGDLSHEFIVLADT-----------GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               L      L +               ++  SKD     I        D +   S   
Sbjct: 176 YRQALVDYLTPLREKLDPDSQERLTRNPLRILDSKDPRTREIAEGAPKLPDYLGPES-RA 234

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
            +    A    +      D          +    E+      G++ ++     + G    
Sbjct: 235 FFEQVQAHLQMLDIPYQLDPYLVRGLDYYTDTAFEIVSPD-LGSQSTVCGGGRYDGLVEE 293

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R+V  ++     G+        AP ++ +I+  A  +      
Sbjct: 294 LGGPSTPAVG-WAVGMERLV--LLLQKKQGEAPP-----APVEVYVISRGAKAEAQ---S 342

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +I   L + G     D  G   G QF  A   G    V++G    +  +V++KH  TG 
Sbjct: 343 LRIAQALRRAGFCTELDLSGSAFGKQFKRASRSGATWAVVLGDAEAAAGEVQLKHLPTGQ 402

Query: 426 REDMSLEEVINYASHR 441
           ++ +   +++ Y +  
Sbjct: 403 QQTLLQADLVKYLASH 418


>gi|315142824|gb|ADT80987.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ +          ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIXPCGVTANLSESEKKLLAEKCEALEKELREASIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|329766758|ref|ZP_08258301.1| glycyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137013|gb|EGG41306.1| glycyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 485

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 127/358 (35%), Gaps = 30/358 (8%)

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           M ++      ++A +   T + +  D  R +      LP    Q+   FR+E+ PR  ++
Sbjct: 145 MFKVGIGPEEEEAYLRPETCQSIFVDFPRLYKTMRGKLPLGIAQVGKSFRNEISPRQSLL 204

Query: 151 RSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           R REF   +   F           + ++  + +RI     +  IPM  +     G + ++
Sbjct: 205 RLREFYQAEIEVFCNPNKLDEIEKFREIENAIIRIQTDAEI--IPMTCKKAVESGVVPNK 262

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+       T+ +                  +      +   +               + 
Sbjct: 263 FVAYYLAILTEFYEKTGIDITKSRFRKLGEKEKAFYAQVAFDFEVETTIGWLELVACNYR 322

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S  +    + +  E         K+   M       + +     +    +G  R +  ++
Sbjct: 323 SDYDLSSHANKSKE---------KF-EVMD------NEEKVLPHVFEISMGIDRSLYTIL 366

Query: 330 ESS------HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           E S      H+   +     +AP  + ++++   D   ++  ++IY  L +   DVF D 
Sbjct: 367 EHSLIDDKEHERVVLSIKPYLAPVHVGVLSLIKKD-GLKEKTDEIYLSLKRK-YDVFLDH 424

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G  IG ++   D +G P  V V  +   D  V I+ R +  +E + ++++ +  S  
Sbjct: 425 SGA-IGRRYRRLDEIGAPFAVTVDYQSFEDQTVTIRKRDSMSQERIKIDDIDSVISKE 481



 Score = 41.1 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 9/156 (5%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + P G    +    + R E   R G +E+    + S  ++  SG   ++   +++
Sbjct: 28  AGFWEYGPSGVSLKNKFLELWRRELIRRDGMMEIDGSQIMSKSVFEASGHLGNFADPIIK 87

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                          E    +I  S   S  +       I        + +     +++F
Sbjct: 88  CTKCKSTFRADRTIAEISKVEIPESADLSEFDNAILQNNI-----KCPKCKGDFESTKKF 142

Query: 156 LMKDAYSFDLTPEGSK---HSYNKMFVSYLRIFHRL 188
            M          E +     +   +FV + R++  +
Sbjct: 143 NMMFKVGIGPEEEEAYLRPETCQSIFVDFPRLYKTM 178


>gi|327490405|gb|EGF22189.1| histidine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 426

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 138/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  +           
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGPG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   V   +V +K+     
Sbjct: 345 LELVQALRTQGFAAERDYLDRKLKAQFKSADIFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|315142800|gb|ADT80975.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
 gi|315142804|gb|ADT80977.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila torreya]
          Length = 148

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNSGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + P  VAP ++ ++         ++  ++  + CE +   L +    V  D       G 
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELRESSIRVKGDYRENYSPGW 143

Query: 391 QFAVA 395
           +F   
Sbjct: 144 KFNHW 148


>gi|317055716|ref|YP_004104183.1| glycyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315447985|gb|ADU21549.1| glycyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 461

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 114/368 (30%), Gaps = 74/368 (20%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D   +  +   T + +  +       + + +PF   Q+   FR+E+ P  
Sbjct: 150 MFKTFQGITEDSKSELYLRPETAQGIFVNFANIQRTTRKKVPFGVAQVGKSFRNEITPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F       +      +  Y R F +  L S+ ++           
Sbjct: 210 FIFRVREFEQMELEFFCKPGTDLE------WFDYWRSFCKNFLLSLNIK----------- 252

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  +        S + + F   +              +             H    
Sbjct: 253 -------EENLRLRDHSAEELCFYSKATTDFEYLFPFGWGELWGVADRTDYDLTQHINTS 305

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             S                       Y  P          + +   +    +G  R+   
Sbjct: 306 GKS---------------------LDYFDP-------ETNERYIPYVIEPSLGVERLFLT 337

Query: 328 VIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           ++  ++D + I             +  ++APFK  ++ +        +   ++Y  L+K 
Sbjct: 338 IVTEAYDEEDIGTPEKPDVRTVMHFHPALAPFKACVLPLSKK---LAEPAGELYDTLAK- 393

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V +D+ G  IG ++   D +G P  +        D  V ++ R +  +E + ++E++
Sbjct: 394 NFSVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSAEDGCVTVRDRDSMEQERVKIDELV 452

Query: 436 NYASHRFS 443
            Y + + +
Sbjct: 453 EYINKKIA 460


>gi|116872949|ref|YP_849730.1| histidyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741827|emb|CAK20951.1| histidyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 425

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 148/435 (34%), Gaps = 48/435 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    ++        E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLEDEFKKVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              + +++   F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVEVISLAMAF---FRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI- 248
                          EF             ++   K   + P+        D ++  SI 
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHENPLIKSAPSILDFLNEESIA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKNYLTALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +GIG  R++ A+     +   I  P    P K+ +I  +   ++    
Sbjct: 295 EFGGPDTPGIG-FGIGVERILLAL-----EKADIKIPAK-KPLKVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  ++ +Q   A+       +I+G + +     ++KH  +G
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKLKAQLKDANRKKANYTIILGEEELQTGNYQLKHMESG 404

Query: 425 IREDMSLEEVINYAS 439
            +E +S + +I   +
Sbjct: 405 EQEAVSEQTIIEKLT 419


>gi|18313224|ref|NP_559891.1| glycyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|18160741|gb|AAL64073.1| glycyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 586

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 92/540 (17%), Positives = 162/540 (30%), Gaps = 141/540 (26%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMSVPTLQSADLWVESGRYDSYGKEM 93
           G Y + PLG +   N+    R+            E+  P +    ++  SG  D +   +
Sbjct: 29  GFYDYGPLGVQLRRNIVEKWRKVFVLP-YQDLIIEVETPIIMPEPVFKASGHLDHFTDYL 87

Query: 94  LRLADRNDKAM----------------------------------IYGPTHE------EV 113
           +       K                                    I  P         E 
Sbjct: 88  VTCTKCGRKYRADHLVEEELAKRGLKISTEGMSASDLERLISEHKIVCPHCGGPLGRVET 147

Query: 114 MTDIFRSHIKSY---------------------------RNLPFTFYQIQLKFRDELRPR 146
              +F++ I  Y                           R  PF   QI    R+E+ PR
Sbjct: 148 FNLLFKTTIGPYSENAGYLRPETAQGMFVAFPRLAEYVGRRHPFGVAQIGRVARNEISPR 207

Query: 147 FGVMRSREFLMKDAYSFD-------------------LTPEG--SKHSYNKMFVSYLRIF 185
            G+MR REF   +   F                    + PE   +K     ++++   + 
Sbjct: 208 GGLMRLREFTQMEIELFFDPQNPKCPYFAEVESFEIPIVPEEFVAKGQTEPVYLTAREVV 267

Query: 186 HR---------------LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
            R                 LK + +  E     G L HE    +     Q+  ++ F   
Sbjct: 268 ERGHANEWMAFFMALAAKFLKELGVPIERQKFLGKLPHERAHYSAKSYDQMVLTERFGWV 327

Query: 231 PIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR-GIEVG--- 285
            +         D+   +    +        S     ++    P    +  R G ++G   
Sbjct: 328 EVSGHAYRTDYDLSGHSKFSSREMYLERRLSTPKEVEVVRLYPNPNAIRERYGDKIGEVI 387

Query: 286 -----HIFYFGTKYSLPMSATFKGA-----------------DGKDHYVQMGSYGIGAMR 323
                H       ++  MS    G                  D +     +     G  R
Sbjct: 388 KAIKEHEGRVIEAFNRGMSEVALGEYVISRDMVYIKLEKRKTDLEKFIPHVVEPSFGLDR 447

Query: 324 VVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           ++  V+ES+   +     +  P  +AP K  ++ I        +    ++  L++ G  V
Sbjct: 448 IMYVVLESAVVEEEGRVYLRLPPDIAPVKACILPIVKRADYV-EIGRTLWRSLARQGFVV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            ++D G  IGS++A  D +G PL V +  K   D  V I+ R T  +  + L +V+ + S
Sbjct: 507 LYEDEG-TIGSRYASCDEIGTPLAVTIDEKTPVDGTVTIRDRDTKRQVRVKLGDVVTFVS 565


>gi|292654231|ref|YP_003534128.1| glycyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291372518|gb|ADE04745.1| glycyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 594

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 85/560 (15%), Positives = 165/560 (29%), Gaps = 150/560 (26%)

Query: 24  KLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G     S+      G Y++ P G     NV    RE    + G +E+  PT+  
Sbjct: 12  ELAKRRGFFFGSSEAYGGVGGFYTYGPQGAALKSNVEEAWRERFAVQEGNLEIEAPTIMP 71

Query: 77  ADLWV-------------------ESGRYDSYGKEMLRLADRN-----------DKAMIY 106
             ++                    ES R D   ++   L D                 + 
Sbjct: 72  EPVFEASGHLDGFDDMLVECAECGESHRADHLIEDNSELEDAETLSPEAAAEKIADLGLV 131

Query: 107 GPTHE--------EVMTDIFRSHI---------------------------KSYRNLPFT 131
            PT          E    +F ++I                            +  +LPF 
Sbjct: 132 CPTCGADLAGQSVEDFNLMFETNIGPGSSTPGYLRPETAQGIFVEFPRIKEYARNSLPFG 191

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF------ 185
             Q+   +R+E+ PR  ++R+REF   +   F + PE  +   + +    + ++      
Sbjct: 192 VTQVGRAYRNEISPRKSIVRTREFTQAELEHF-IDPERDEADLSAVEDVEVLLYPATEQE 250

Query: 186 ---HRLGLKSIPMRAESGPIGGDLSHEFIVLAD-------------------TGETQVFC 223
                    +I    + G IG      F+ +A                     GE   + 
Sbjct: 251 ADDGDYVETTIGEAVDDGIIGNAWLGYFLGIAQEWYETVGVDMDRFRFRQHLAGERAHYS 310

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------V 277
           S  +        +       S  S  +          D    + +D     +R      +
Sbjct: 311 SDCWDAESEVDGDWIEIAGFSYRSDYDLSKHGEYGDDDFTVFQQYDEPKTVERAVVDPDM 370

Query: 278 SARGIEVGH--------IFYFGTKYSLPMSAT-----FKGAD------------------ 306
           +  G E G         +     +      A        G +                  
Sbjct: 371 ATLGPEFGAQAADVAEALETLAERDPDAFDADEVTLDVDGEEITVDTDVANFAVETQTEA 430

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHD 358
           G+     +     G  R V  ++  +++           +    SVAP  + +  + ++ 
Sbjct: 431 GEHITPHVVEPSFGIDRTVYTLLAHAYETDEVDGEARSYLSLSPSVAPTNVGVFPLVSNV 490

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS---DSK 415
               D  + +   L   G  V +DD G  IG ++   D +G P  + +    +       
Sbjct: 491 DGLVDLADDVAEELRAAGFAVVYDDSG-SIGRRYRRQDEVGTPFCITIDRDGLEGDGADT 549

Query: 416 VEIKHRLTGIREDMSLEEVI 435
           V I+ R +G +  + +++++
Sbjct: 550 VTIRERDSGKQVRLPVDDLV 569


>gi|327463740|gb|EGF10056.1| histidine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 426

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 138/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESARWQYVEDFARKTFKKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRRALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 TYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  +           
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVDLPIETA-LDVYVAVLGTG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADIFKAKTLITLGESEVESGQVTVKNNYNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|218291280|ref|ZP_03495256.1| histidyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218238828|gb|EED06040.1| histidyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 420

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 134/437 (30%), Gaps = 51/437 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSY 89
           I +  +G    LP   +A   + A++R+   R    E+  P  +  +L+        D  
Sbjct: 3   IRR-PRGTQDILPGAVEAWQALEAVVRDVFERANYEEIRTPIFEHTELFERGVGETTDIV 61

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            KEM    DR  +++   P     +   +  +    +      Y +   FR E +P+ G 
Sbjct: 62  SKEMYTFLDRGGRSVTLRPEGTAGVVRAYVENKLYGQGSLTKVYYLGPMFRYE-KPQRG- 119

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIG 203
            R R+                      +      I  RLG++ + +   S       P  
Sbjct: 120 -RLRQLHQVGVEVLGSELPAIDAE---VIELGYSILKRLGMRDMTVELNSVGCSVCRPRH 175

Query: 204 GDLSHEF------------IVLADTGETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVE 250
            +   E              V  +    ++F  K+      +   N  +      +   +
Sbjct: 176 REKMIERLLPYREELCGDCQVRLEKNPLRLFDCKNESCQQVLREANVPYIVDELCDDCRK 235

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYF-----GTKYSLPMSATFK 303
              A       +      +          +    E+  +  F     G +Y+  + A   
Sbjct: 236 HLDAVEGYLRAMDVPYRLEKSLVRGLDYYTRTAWEI-TVPNFSTVLGGGRYNR-LVAELG 293

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           G D        G      M  V AV+E+     G        P    +      D+    
Sbjct: 294 GPD------VPGIGFAAGMDRVIAVLEAQGVSLGER-----QPLDAFICV---ADETAEH 339

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L ++G     D  G  + SQF  AD LG    V++G   ++     +KH  T
Sbjct: 340 TAMAVLTSLRRLGVRCDRDYQGRSLKSQFKQADRLGAKFAVVIGESELAKGAATVKHLAT 399

Query: 424 GIREDMSLEEVINYASH 440
           G + D+   ++ +    
Sbjct: 400 GEQRDVPFGQLADRIRE 416


>gi|170017024|ref|YP_001727943.1| histidyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|169803881|gb|ACA82499.1| Histidyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 434

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 148/439 (33%), Gaps = 63/439 (14%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG    LP       ++ +I R         E+  P  ++ D++  S     D   
Sbjct: 6   FQKPKGTADLLPEQTAQWQHIESIARLLFGDYNFREIRTPLFENFDVFSRSAGDTSDVVT 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           KEM    D+ ++ +   P     +   +          + P+  + I   FR E RP+ G
Sbjct: 66  KEMYDFHDKGNRHIALRPEGTAGVVRAYVENKLYGPEFDKPYKAFYIGPMFRYE-RPQAG 124

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------- 199
             R R+F      +F  T          M V +   F  LGLK++ +   +         
Sbjct: 125 --RFRQFHQIGVEAFGATAPALDVEIIAMAVDF---FQTLGLKNLKVAINTLGDQASREA 179

Query: 200 ---------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                     P   +LS +     +    +V  SKD  D     +     D +S +S   
Sbjct: 180 YRKALIAYLKPHFDELSPDSQARLEKNPLRVLDSKDPRDQVFVEDAPSILDFLSDDSSQH 239

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFYF---------GTKYSLPMSA 300
             T     T+     ++  ++          I E+  +            G +YS  + A
Sbjct: 240 WQTVQELLTALDITFEVDSTMVRGLDYYNDTIFEIMTVDDSLKGAATIAGGGRYS-GLVA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-----FKISLINIK 355
            F G +          +GIG  R+++ +               VAP         ++NI 
Sbjct: 299 EFGGPE-----TPGVGFGIGVERLISLLATQ-----------GVAPVKDDGLDFYVVNIG 342

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               V      +I   +   G     D +G    SQF  AD       V VG   +++  
Sbjct: 343 TSTNVV---ATQIVQAIRSFGYVAERDYLGRSAKSQFKSADRHHSRYVVTVGETELANHV 399

Query: 416 VEIKHRLTGIREDMSLEEV 434
           V IK+  TG+++ + L ++
Sbjct: 400 VNIKNMATGMQQTVKLADL 418


>gi|260891941|ref|YP_003238038.1| seryl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260864082|gb|ACX51188.1| seryl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 427

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG      +   + +      G  E+  P L + +  V +G+   + ++M ++ 
Sbjct: 163 FVFYRGLGAALERALINFMLDLHTREHGYEEVFPPFLVNRESMVGTGQLPKFAEDMFKV- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               +     PT E  +T++ R  I     LP  +      FR E     R   G++R  
Sbjct: 222 --EGEDFYLIPTAEVPVTNLHREEILDGGQLPLKYVAYSACFRAEAGAAGRETRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           +F   +   F   PE S+    K+      +  RLGL    +   +G +G
Sbjct: 280 QFNKVELVKF-CRPEQSEEELEKLVADAEEVLKRLGLPYRVVVLCTGDLG 328


>gi|220906685|ref|YP_002481996.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|254782326|sp|B8HMM0|SYH_CYAP4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|219863296|gb|ACL43635.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 429

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 138/440 (31%), Gaps = 48/440 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q S+G    LP        V A+ R+   R    E+  P  +   L+    G   D  GK
Sbjct: 5   QASRGTRDILPEEIVYWQRVEAMARQILQRAAYQEIRTPMFEQTALFERGIGEATDIVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR ++++   P     +      H    +      +     FR E RP+ G  R
Sbjct: 65  EMYTFLDRGERSLTLRPEGTAGVVRALIEHKLFAQGGVQRLWYTGPMFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +      +      +  +L L    +   S  +G     +  
Sbjct: 122 QRQFHQLGVEVLGSADPRADAE---VIAIATDLLQQLRLTDWTLMLNS--VGNQEDRQRY 176

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE---KLF 268
             A       + ++   D            + S +   ++         +   E   + F
Sbjct: 177 RQALVDYLTPYQAELDPDSQERLHRNPLRILDSKDQRTQEICQQAPQILNYLGETSRQHF 236

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGAD----------------GK 308
           D + ++        E+ H    G  Y    +     T  GA                 G 
Sbjct: 237 DRVQQSLTDLGIPYELNHRLVRGLDYYTHTAFEFQTTELGAQATVCGGGRYDRLVTELGG 296

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +G + IG  R++  ++    +      PD           + A  +V       +
Sbjct: 297 PDTPAVG-WAIGLERLI--LLLQHQNISYEAKPDFY---------LVAKGEVAEPQALIL 344

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G  V  D  G   G Q   AD  G PL +I+G        V++K   +G +E 
Sbjct: 345 AQKLRHHGFVVELDLSGSAFGKQLKRADRSGAPLCLILGDAEAEAQTVQLKWLASGEQEV 404

Query: 429 MSLEEVI---NYASHRFSNN 445
           +S  +++   N    + +++
Sbjct: 405 LSQTDLLDRSNLLRQKIADS 424


>gi|171778068|ref|ZP_02919325.1| hypothetical protein STRINF_00160 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283050|gb|EDT48474.1| hypothetical protein STRINF_00160 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 425

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LA   
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELA--- 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           +   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 NSDYVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFS-KPETSYDELEKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|110798964|ref|YP_696613.1| histidyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|123049701|sp|Q0TP27|SYH_CLOP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110673611|gb|ABG82598.1| histidyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
          Length = 415

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 125/430 (29%), Gaps = 36/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R REF       F              +  +    F   GL                +
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFN 177

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATSDV 262
                        +  +        P    D  +      + E      +     +    
Sbjct: 178 EALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFS 237

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY 311
             +   D +   +      I  G  +Y  T + +                 +  DG    
Sbjct: 238 KLKAYLDVMGI-EYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTP 296

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G+  +           D +GI  P+   P +  +      D    +   K+   
Sbjct: 297 AMGFGLGLERL-------LLILDEEGIEIPE---PVRCEVYIGSMGDNAKLE-AMKLAFN 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D +G+ + +Q   A+ +G     ++G   + ++K++IK    G + ++SL
Sbjct: 346 LRKAGIKAEIDHLGKSVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEVSL 405

Query: 432 E--EVINYAS 439
           +  E++N   
Sbjct: 406 DINEIVNIVK 415


>gi|166032677|ref|ZP_02235506.1| hypothetical protein DORFOR_02392 [Dorea formicigenerans ATCC
           27755]
 gi|166027034|gb|EDR45791.1| hypothetical protein DORFOR_02392 [Dorea formicigenerans ATCC
           27755]
          Length = 487

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 120/368 (32%), Gaps = 76/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 176 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 235

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       +  +Y K F   L   H LGLK               
Sbjct: 236 FTFRTREFEQMELEFFCEPDTDLEWFAYWKKFC--LDWLHTLGLKD-------------- 279

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E        E   F SK   D                   +  +            + 
Sbjct: 280 -EEVRYRDHDKEELSFYSKATTDIE----------------FLFPFGWGELWGIADRTDY 322

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                    +                         F     + +   +    +GA RVV 
Sbjct: 323 DLTQHMNVSKQDL--------------------TYFDDEKKEKYTPYVIEPSLGADRVVL 362

Query: 327 AVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           A + +++D + I             +  ++AP KI ++ +        +  EK+YA+L+K
Sbjct: 363 AFLCAAYDEENIGTEDKPDTRTVLHFHPALAPVKIGILPLSKK---LNEGAEKVYAQLAK 419

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++
Sbjct: 420 K-YNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERIKIEDL 477

Query: 435 INYASHRF 442
             Y   +F
Sbjct: 478 DAYFEKKF 485


>gi|182624433|ref|ZP_02952217.1| histidyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177910436|gb|EDT72813.1| histidyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 415

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 130/438 (29%), Gaps = 52/438 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R REF       F             + +  L      G+K + +   S  +G     
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALT--EDFGIKGLSLNINS--LGCPK-- 171

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT------SDV 262
                A   E      K+  D    +  T F+         ++                +
Sbjct: 172 ---CRAKFNEALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYI 228

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYF--GTKY-SLP----------------MSATFK 303
             E           +   GIE         G  Y S                       +
Sbjct: 229 CEECSDHFSKLKAYLDVMGIEYNIDSQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVE 288

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             DG          G+  +           D +GI  P+   P +  +      D    +
Sbjct: 289 EVDGPKTPAMGFGLGLERL-------LLILDEEGIEIPE---PIRCEVYIGSMGDNAKLE 338

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K G     D +G+ + +Q   A+ +G     ++G   + ++K++IK    
Sbjct: 339 -AMKLAFNLRKAGIKAEIDHLGKSVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSD 397

Query: 424 GIREDMSLE--EVINYAS 439
           G + ++SL+  E++N   
Sbjct: 398 GEQFEVSLDINEIVNIVK 415


>gi|76798465|ref|ZP_00780702.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76799387|ref|ZP_00781541.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76585255|gb|EAO61859.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76586166|gb|EAO62687.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
          Length = 381

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++   LAD  
Sbjct: 121 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADS- 179

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 180 --PFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 237

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 238 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 296

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 297 PAQNTYREISSCSNTEDFQARRAQIRYRD 325


>gi|126460233|ref|YP_001056511.1| glycyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|126249954|gb|ABO09045.1| glycyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 588

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 84/539 (15%), Positives = 161/539 (29%), Gaps = 139/539 (25%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ---NRTGAIEMSVPTLQSADLWVESGRYDSY----- 89
           G Y + PLG +   N+    R       +   +E+  P +    ++  SG  D +     
Sbjct: 32  GFYDFGPLGVQIRRNIVEKWRRTFVLPYQDFIVEVETPIIMPEPVFKASGHLDHFTDYVV 91

Query: 90  ---------------GKEM----LRLADRN----------DKAMIYGPTHE------EVM 114
                           +E+    L+++             ++  I  P         E  
Sbjct: 92  TCSKCGRKFRADHLVEEELAKRGLKVSTEGLSAADLKRLIEEHKIRCPVCGGELGDVETF 151

Query: 115 TDIFRSHIKSYRNL---------------------------PFTFYQIQLKFRDELRPRF 147
             +F++ I  Y +                            PF   QI    R+E+ PR 
Sbjct: 152 NLLFKTTIGPYSDSAGYLRPETAQGIFVAFPRLAEYVGRRHPFGVAQIGRVARNEISPRG 211

Query: 148 GVMRSREFLMKDAYSFDLTP------------------------------------EGSK 171
           G++R REF   +   F                                        E  +
Sbjct: 212 GLIRLREFTQMEIELFFDPQNPKCPVFAEVENLEVPIVPEELVAKGATDPLYLTAREVVE 271

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             Y   ++++        L+ + +  E     G L HE    +     Q+  ++ F    
Sbjct: 272 KGYANEWMAFFMALAAKFLRELGVPLEKQKFLGKLPHERAHYSAKSYDQMVYTERFGWVE 331

Query: 232 IPSENTDF-DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE------- 283
           +         D+   +    Q              ++    P    +  +  +       
Sbjct: 332 VSGHAYRTDYDLSGHSKHSGQELYLERRLPAPKEVEVVRVYPNPATIREKYGDRLGEVVK 391

Query: 284 --------VGHIFYFGT------KYSLPMSATFKGA-----DGKDHYVQMGSYGIGAMRV 324
                   V   F  G        + +     F  A     D +     +     G  R+
Sbjct: 392 AIKEAEARVAEAFRQGASEVRVGDFVVTREMVFIKAEKRRTDLEKFIPHVVEPSFGLDRI 451

Query: 325 VAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +  V+E +   +G    +  P  +AP  + ++ I   +       +++   L+  G  V 
Sbjct: 452 LYVVLEHAVAEEGGRVYLRLPPDIAPVTLCILPIVKREDYV-AIGKRLMRELASEGFLVH 510

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +DD G  IGS++A  D +G PL V +  +   D  V I+ R T  +  +   +V  +A+
Sbjct: 511 YDDEG-TIGSRYAACDEVGTPLAVTIDERTPVDGTVTIRDRDTRRQVRVKTSDVARFAA 568


>gi|325678778|ref|ZP_08158376.1| glycine--tRNA ligase [Ruminococcus albus 8]
 gi|324109282|gb|EGC03500.1| glycine--tRNA ligase [Ruminococcus albus 8]
          Length = 461

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 125/369 (33%), Gaps = 76/369 (20%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D   +  +   T + +  +       + + +PF   Q+   FR+E+ P  
Sbjct: 150 MFKTFQGITEDTKSERYLRPETAQGIFVNFANIQRTTRKKVPFGVAQVGKSFRNEITPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F       +      +  Y R F +  L S+ ++           
Sbjct: 210 FIFRVREFEQMELEFFCKPGTDLE------WFDYWRTFCKNFLLSLNIK----------- 252

Query: 208 HEFIVLAD-TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            E + L D + E   F SK   DF                     +   +     V +  
Sbjct: 253 EENLRLRDHSAEELCFYSKATTDFE------------------YLFPFGWGELWGVADRT 294

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
            +D          R             Y  P          + +   +    +G  R+  
Sbjct: 295 DYDLTQHINTSGKR-----------LDYLDP-------ETNEKYIPYVIEPSLGVERLFL 336

Query: 327 AVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            V+  ++D + I             +  ++APFK  ++ +        +  +K++  L+K
Sbjct: 337 TVVTEAYDEEDIGTPEKPDVRTVMHFHPALAPFKACVLPLSKK---LAEPAQKLFDTLAK 393

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V +D+ G  IG ++   D +G P+ V      V D  V ++ R T  +E + +E++
Sbjct: 394 H-FSVDYDEAG-SIGKRYRRQDEIGTPICVTYDFDSVEDGCVTVRDRDTMEQERIKIEDL 451

Query: 435 INYASHRFS 443
           + Y + +  
Sbjct: 452 VGYIAKKIE 460


>gi|294506836|ref|YP_003570894.1| Histidyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294343164|emb|CBH23942.1| Histidyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 437

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 133/419 (31%), Gaps = 49/419 (11%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             +V A +R+   R    E+  P L+  +L         D   KEM    +R+D   +  
Sbjct: 35  WRHVEATVRDVMRRHNFEEIRTPVLEPTELVARGVGESTDIVQKEMFAF-ERSDTQYVLR 93

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H    R      + I   FR E  P+ G  R R+F            
Sbjct: 94  PEITAPVVRSFLQHHLDQRGGVQKLFYIGPCFRAEQ-PQKG--RYRQFHQFGIEVLGADQ 150

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
             +      + ++   +   LGL  + +R  +                   P   +LS  
Sbjct: 151 PRADAETIAVLMA---VCEALGLSDLRLRLNTLGTPERREEYVAALQDYLAPHADELSET 207

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +    ++  +K   +  +  +     D +S  S+            D+  E   D
Sbjct: 208 SRRRLEQNPLRILDTKVEHEQALLRDAPTLIDFVSDESLAHYDEVK-GLLGDLGVEYDED 266

Query: 270 SLPENKR--VSARGIEVGHIFYFGTKYSLPMS------ATFKGADGKDHYVQMGSYGIGA 321
                     +    E+ H    G + +L         A   G+D         + G+  
Sbjct: 267 PHLVRGLDYYTETTFELEHPG-LGAQSALAGGGRYDRLAEVLGSD-DPVPAVGFAAGM-- 322

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+  A+  +  D  G   PD         + I A        C +    L   G  V  
Sbjct: 323 ERLFLALDAAEADRPGAATPD---------VFIAALGDEAEAWCFRTAQELRAGGLHVAH 373

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D MG  + +Q   A+    P  +I+G   +      +K   +G +ED+  ++++ Y + 
Sbjct: 374 DLMGRSLKAQMKEANRQNAPYAMIIGGNELEAGAATVKEMESGEQEDVPFDDLVEYLTS 432


>gi|300857280|ref|YP_003782264.1| glycyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300437395|gb|ADK17162.1| glycyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 463

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 150/444 (33%), Gaps = 55/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P+G +  +NV  +  ++        + +    L + ++WV SG   ++   ++   
Sbjct: 34  WDYGPIGVELKNNVKKVWWQKFVHESEHNVGIDCAILMNNEVWVASGHVGNFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIF---RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +   +        E +         +   S   L        +      +  F  +R  +
Sbjct: 94  ECKARFRADKLVEEHMTAQGVEKASADGWSNEKLEKYIDDNNIVCPSCGKKNFTDIR--Q 151

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGDL 206
           F +       +T +     Y +   +   IF    +    ++  S          IG   
Sbjct: 152 FNLMFKTFQGVTEDSKSEIYLR-PETAQGIF----VNFKNVQRTSRKKIPFGIAQIGKSF 206

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E      T  T+ F   +   F  P  + ++ D           +      +    + 
Sbjct: 207 RNEITPGNFTFRTREFEQMELEFFCKPGTDLEWHDYWKKYCWNFLLSLGIKEENIRFRDH 266

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD--------GK 308
             + L      ++   ++ ++F FG          T Y L       G D         +
Sbjct: 267 DKEELSHYSNATS---DIEYLFPFGWGELWGVADRTDYDLKQHQEHSGKDMTYLDTVTKE 323

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQ 359
            +        +GA R V A +  ++D + +          +  ++APFK +++ +     
Sbjct: 324 KYIPYCIEPSVGADRAVLAFLVDAYDEEELEGGDVRTVLHFHPAIAPFKAAILPLSKK-- 381

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++Y  L K   +V +DD G  IG ++   D +G P  + V    + D+ V ++
Sbjct: 382 -LSEKALEVYNILRK-DFNVEYDDAG-SIGKRYRREDEIGTPYCITVDFDTMDDNTVTVR 438

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + +EE+  +   +  
Sbjct: 439 DRDTMEQFRIKIEELSAFIQEKVQ 462


>gi|167755650|ref|ZP_02427777.1| hypothetical protein CLORAM_01165 [Clostridium ramosum DSM 1402]
 gi|167704589|gb|EDS19168.1| hypothetical protein CLORAM_01165 [Clostridium ramosum DSM 1402]
          Length = 457

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 119/365 (32%), Gaps = 73/365 (20%)

Query: 93  ML-----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       + D  D   +   T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 149 MFETQMGVVEDAKDVVYLRPETAQGIFVNFKNIQRTSRKKVPFGIGQIGKAFRNEITPGN 208

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F   P+     ++       +    LGLK   +R           
Sbjct: 209 FIFRMREFEQMELEFF-CKPDTDLEWFDYWKSYCQKFLFDLGLKEENLRFRD-------- 259

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE        E   F SK   D                      +               
Sbjct: 260 HE-------KEELSFYSKATCDVEYN----------------FPFGWGELWGIADRTNYD 296

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
                 + + S                       +      + +   +    +GA R+  
Sbjct: 297 LTQHQNHSKKS---------------------LEYLDPTTNEKYIPYVIEPSVGADRLFL 335

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           +V+  S++ + +             SVAPFK++++ +        D   +IY +L+K   
Sbjct: 336 SVLCDSYEEEILEDGETRVVMKLHPSVAPFKVAILPLTKKQS---DKATEIYGQLAKY-F 391

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +D  G+ IG ++   D +G P  V V    + D  V ++ R T  +  + + ++++Y
Sbjct: 392 NCEYDVAGQ-IGKRYRRQDAIGTPYCVTVDFDTMEDETVTVRDRDTMEQIRLPINQLVDY 450

Query: 438 ASHRF 442
            S + 
Sbjct: 451 ISKKI 455


>gi|221633039|ref|YP_002522264.1| glycyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|254782309|sp|B9L0I4|SYG_THERP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|221156893|gb|ACM06020.1| glycyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 468

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/451 (14%), Positives = 140/451 (31%), Gaps = 67/451 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +   N+     E   +     + +    L    +W  SG  + +      L 
Sbjct: 38  WDFGPLGAELKRNLKNAWWEYFIQRREDMVGLDGGILLHPRVWEASGHVEEFND---PLI 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF----------TFYQIQLKFRDELRPRF 147
           D       +        T I     +S   L                     RD    R 
Sbjct: 95  DCRRCKSRFRAD-----TLIEERLHRSTEGLSLDEMTRLVQEANLACPVCGVRDWTPVRK 149

Query: 148 GVMRSREFL---MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
             +  R F+     ++    L PE ++     +FV++  +        + +    G IG 
Sbjct: 150 FNLMFRTFIGPVETESTPVYLRPETAQ----AIFVNFKNVVQT---SRVKIPFGIGQIGK 202

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +E            F   +   F  P    ++ D              +        
Sbjct: 203 AFRNEITPGNFIFRLLEFEQMEIEYFIRPEMWEEYFDHWLNEMGQFLRWIGFKPDRLRTR 262

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD-------- 306
           E       E    S + ++  + F FG          T Y L     + G D        
Sbjct: 263 EH---GPQELSHYSRKTVDFEYFFPFGWKELCGLAYRTDYDLRRHQEYSGEDLTYFDQER 319

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLIN 353
            + +   +    +G  R+  A++  ++D +              + +   VAP+K++++ 
Sbjct: 320 NERYIPHVIEPTMGVERLFLALLCDAYDEEPAVDVNGNPYTRVVLRFHPRVAPYKVAVLP 379

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    ++      ++   L +    + +D+  + IG ++   D +G P  V +  + + D
Sbjct: 380 LLRKPELVT-VAREVAQELRQY-FRIEYDET-QSIGRRYRRQDEIGTPYCVTIDYQTLED 436

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V I+ R T  +  + +  ++     R  +
Sbjct: 437 RTVTIRDRDTMQQVRVPISGLVEEIEARLRS 467


>gi|11499232|ref|NP_070470.1| histidyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334353|sp|O28631|SYH_ARCFU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2648908|gb|AAB89600.1| histidyl-tRNA synthetase (hisS) [Archaeoglobus fulgidus DSM 4304]
          Length = 409

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 152/436 (34%), Gaps = 60/436 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKE 92
           +  +G   +LP   +    +   +R+     G  E++ PT +  +L+  +SG  +   +E
Sbjct: 4   ERPRGTRDFLPDEMERRREIEKRMRKIAESFGYREVATPTFEYLELFTRKSG--EGIIEE 61

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    D++ + +   P     +  +F +   S    P  FY     FR E RP+ G  R 
Sbjct: 62  MYVFKDKSGRDLALRPELTAPVMRMFVNEC-SVMPKPLRFYYFANCFRYE-RPQKG--RY 117

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-------PMRAESGPIGGD 205
           REF              +      + +   +I   +G+           MR    PIG D
Sbjct: 118 REFWQFGVELIGSESYLADAE---VIILADKILKDVGVNFSLEIGHVGIMRHLLKPIGED 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + + + L D G+ +   S           N D  D I     ++   +      +   E
Sbjct: 175 RASKVMRLIDKGDREGLESYLAEIRV----NEDLRDKIFSLLELKGDESV----IEEAKE 226

Query: 266 KLFDSLPENKRVSARGIEVGHIFYF------GTKY--SLPMSATFKGADGKDHYVQMGSY 317
            +       + +SA   +VG  F        G  Y   +      +G   +      GSY
Sbjct: 227 IIDYDFGHLESLSALLRDVGVDFTLNLGIARGLDYYTGVVFECYAEGLGAQKQVCGGGSY 286

Query: 318 GIGAMRVVAA--------------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +  +                 V E+     G     SV    +++++ K  +     
Sbjct: 287 ELSS--LFGGPVTPSTGFAIGFDRVCEACSVEAG---EKSV----VAVVSFKGLESQ--- 334

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ + L + G     D MG  +  Q + A  +G    VI+G   V   +V IK+  T
Sbjct: 335 -AFRVASMLRERGFTAVVDVMGRNLKKQMSFASEMGVKYAVILGPDEVKSGRVAIKNLET 393

Query: 424 GIREDMSLEEVINYAS 439
             +  ++ EE+ +   
Sbjct: 394 QEQVVVAEEELFSILQ 409


>gi|319892622|ref|YP_004149497.1| Glycyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162318|gb|ADV05861.1| Glycyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 464

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 129/369 (34%), Gaps = 78/369 (21%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            + R+REF   +   F     E    +Y K F +       LGL                
Sbjct: 215 FIFRTREFEQMELEFFCKPGTEIEWQNYWKDFAA--NWLESLGL---------------- 256

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + E   L D  E ++    +                 +   I  ++   +     + +  
Sbjct: 257 AKENTRLRDHDEDELSHYSN-----------------ATTDIEYRFPFGWGELWGIASRT 299

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVV 325
            FD                H  + G  +S      +   +  + +        +GA RV 
Sbjct: 300 DFDLKK-------------HSEHSGEDFS------YHDPETNEKYIPYCIEPSLGADRVT 340

Query: 326 AAVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            A +  ++D +G          + +  ++AP+K +++ +            K+Y +LS+ 
Sbjct: 341 LAFLCDAYDEEGVEGSKDARTVLHFHPAIAPYKAAVLPLSKKLSAD---AIKVYEQLSE- 396

Query: 376 GCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             D   D D  + IG ++   D +G P  +      + D +V ++ R T  +  M + E+
Sbjct: 397 --DFVVDFDESQSIGKRYRRQDEIGTPYCITFDFDSLEDQQVTVRDRDTMEQVRMPISEL 454

Query: 435 INYASHRFS 443
             + + +  
Sbjct: 455 NAFLAEKVK 463


>gi|55736407|gb|AAV60049.1| seryl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738291|gb|AAV61932.1| seryl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 446

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  EM  P + + D    +G+Y  + ++   L   +
Sbjct: 186 FYKGLGARLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKEDTFEL---D 242

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 243 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFS-KPEDSYDELEKMVVNAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRD 390


>gi|323464340|gb|ADX76493.1| glycyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 464

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 129/369 (34%), Gaps = 78/369 (21%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            + R+REF   +   F     E    +Y K F +       LGL                
Sbjct: 215 FIFRTREFEQMELEFFCKPGTEIEWQNYWKDFAA--NWLESLGL---------------- 256

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + E   L D  E ++    +                 +   I  ++   +     + +  
Sbjct: 257 AKENTRLRDHDEDELSHYSN-----------------ATTDIEYRFPFGWGELWGIASRT 299

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVV 325
            FD                H  + G  +S      +   +  + +        +GA RV 
Sbjct: 300 DFDLKK-------------HSEHSGEDFS------YHDPETNEKYIPYCIEPSLGADRVT 340

Query: 326 AAVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            A +  ++D +G          + +  ++AP+K +++ +            K+Y +LS+ 
Sbjct: 341 LAFLCDAYDEEGVEGNKDARTVLHFHPAIAPYKAAVLPLSKKLSAD---AIKVYEQLSE- 396

Query: 376 GCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             D   D D  + IG ++   D +G P  +      + D +V ++ R T  +  M + E+
Sbjct: 397 --DFVVDFDESQSIGKRYRRQDEIGTPYCITFDFDSLEDQQVTVRDRDTMEQVRMPISEL 454

Query: 435 INYASHRFS 443
             + + +  
Sbjct: 455 NAFLAEKVK 463


>gi|261403731|ref|YP_003247955.1| glycyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261370724|gb|ACX73473.1| glycyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 575

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 91/549 (16%), Positives = 171/549 (31%), Gaps = 146/549 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESG----------- 84
            G   + PLG    +N+ +  RE+   + G  E+  PT+   ++   SG           
Sbjct: 30  AGFVDYGPLGCLLKNNIISKFREQYIIKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 89

Query: 85  --------RYDSYGKE----------------------------------------MLRL 96
                   R D   +E                                        M   
Sbjct: 90  CKNCLESFRADHLIEEFVDVDTEGKTLKDLEELIRKHNIRCPKCGGELGEVKKFNLMFVT 149

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
           +      +     P   + +   FR   + +RN LPF   QI   +R+E+ PR GV+R R
Sbjct: 150 SIGPGGKRTGYMRPETAQGIFIQFRRLAQFFRNKLPFGVIQIGKSYRNEISPRQGVIRLR 209

Query: 154 EFL-----------MKDAYSFDLTPEG-------------------------SKHSYNKM 177
           EF             K+   FDL  +                           + +  K 
Sbjct: 210 EFTQAEVEYFVHPERKEHERFDLIKDEVVPLLPSERQMDENLKDDEKILKMSIEEAVEKG 269

Query: 178 FV-----SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFP 231
            +     +Y     +  L+ I +  +       L +E    A D  + +++  +      
Sbjct: 270 IIRHQTIAYFIALTKRFLEEIGIDKDKIRFRQHLPNEMAHYAIDCWDAEIYTERFGWIEC 329

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK------RVSARGIEVG 285
           +   +    D+ S +S      + +    +    + F+     K      +   + IE  
Sbjct: 330 VGIADRTDYDLRSHSSHSGVELSIFVELDEEREIETFEINLNYKVVGKIFKKDTKAIE-E 388

Query: 286 HIFYFGTKYSLPM-------SATFKGADGKD---------------------HYVQMGSY 317
           +I     K                   DGKD                         +   
Sbjct: 389 YINNLSEKEKEEFVKSIEKDGKVIINIDGKDFEILKDYVEIKKVKKVIKGEKVIPHVIEP 448

Query: 318 GIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             G  R+   ++E ++  +     +    SVAP K  ++ +   D + +   ++I   L 
Sbjct: 449 SYGIDRITYCLLEHAYREEEDRVYLDLKPSVAPIKAYVLPLVNKDDMPK-IAKEIEQMLR 507

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G    +DD G  IG ++  AD +G P  + V  + + D  + I+ R T  +  + +EE
Sbjct: 508 ENGIIAEYDDSGA-IGRRYMRADEIGVPFCITVDGQTLKDGTITIRERNTREQVRIHIEE 566

Query: 434 VINYASHRF 442
           ++ Y   + 
Sbjct: 567 LVEYLKSKV 575


>gi|77409224|ref|ZP_00785933.1| seryl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77172167|gb|EAO75327.1| seryl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 425

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++   LAD  
Sbjct: 165 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADS- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 224 --PFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|325698123|gb|EGD40004.1| histidine--tRNA ligase [Streptococcus sanguinis SK160]
          Length = 426

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 138/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKPSLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 TYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD       + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADNFKAKTLITLGESEVESGQVTVKNNYNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|322517430|ref|ZP_08070303.1| serine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322123912|gb|EFX95471.1| serine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 446

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  EM  P + + D    +G+Y  + ++   L   +
Sbjct: 186 FYKGLGAKLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKEDTFEL---D 242

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 243 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM V+   I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFS-KPESSYDELEKMVVNAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRD 390


>gi|300087876|ref|YP_003758398.1| glycyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527609|gb|ADJ26077.1| glycyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 440

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 114/477 (23%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQS 76
           L  R G + Q S+      G + + PLG +  +N+     +   Q R   + +    L +
Sbjct: 16  LSRRRGFVFQSSEIYGGQGGCWDYGPLGVQLKNNIKQAWWQSIVQERDDVVGVDSSILMN 75

Query: 77  ADLWVESGRYDSYGKEM---LRLADR---NDKAMIYGPTH-----EE-VMTDIFRSHI-- 122
             +W  SG    +   M   L+   R    D      P+      E      +F++ +  
Sbjct: 76  PRVWEASGHVTGFSDPMSDCLQCKMRWRPEDFEGDVCPSCGGQLTEPRQFNLMFKTFMGP 135

Query: 123 ---------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                       + + LPF   QI   FR+E+     + RSREF
Sbjct: 136 VEDSAAVVYLRPETAQGIFVNFENVLGTTRKKLPFGIAQIGKSFRNEITTGNFIFRSREF 195

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F + P    + +     + L  +   G++                        
Sbjct: 196 EQMELEYF-VKPGTDDYWHQHWLQARLDWYTSFGIRP----------------------- 231

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E     +    +              + + I   +   ++    + N   FD      
Sbjct: 232 --ENLKLRAHCDTELA--------HYAKACSDIQYLFPMGWSELEGIANRCDFDLK---- 277

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHD 334
                     H  Y G K        +   + +++    +     G  R V A +  ++ 
Sbjct: 278 ---------QHSEYSGKK------LEYFDEETRENIVPYVIEPSAGVDRSVLAFLIDAYT 322

Query: 335 GKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +         +     +APFK +++ +   + +      +IYA L K    V +D+  +
Sbjct: 323 EEPDKDETRTVLKLHPRLAPFKAAVLPLSKKEPLAN-LSREIYASLRKAWM-VTYDE-AQ 379

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  + V  + + D++V ++ R +  +  + +EE+  Y   R  
Sbjct: 380 SIGRRYRRQDEIGTPYCITVDFQSLEDNQVTVRERDSMTQVRIPIEEIKAYLFPRLK 436


>gi|168204883|ref|ZP_02630888.1| histidyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170663595|gb|EDT16278.1| histidyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
          Length = 415

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 125/430 (29%), Gaps = 36/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R REF       F              +  +    F   GL                +
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFN 177

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATSDV 262
                        +  +        P    D  +      + E      +     +    
Sbjct: 178 EALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFS 237

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY 311
             +   D +   +      I  G  +Y  T + +                 +  DG    
Sbjct: 238 KLKAYLDVMGI-EYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTP 296

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G+  +           D +GI  P+   P +  +      D    +   K+   
Sbjct: 297 AMGFGLGLERL-------LLILDEEGIEIPE---PVRCEVYIGSMGDNAKLE-AMKLAFN 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D +G+ + +Q   A+ +G     ++G   + ++K++IK    G + ++SL
Sbjct: 346 LRKAGIKAEIDHLGKSVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEISL 405

Query: 432 E--EVINYAS 439
           +  E++N   
Sbjct: 406 DINEIVNIVK 415


>gi|169343616|ref|ZP_02864615.1| histidyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169298176|gb|EDS80266.1| histidyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 415

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 125/430 (29%), Gaps = 36/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R REF       F              +  +    F   GL                +
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFN 177

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATSDV 262
                        +  +        P    D  +      + E      +     +    
Sbjct: 178 EALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFN 237

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY 311
             +   D +   +      I  G  +Y  T + +                 +  DG    
Sbjct: 238 KLKAYLDVMGI-EYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTP 296

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G+  +           D +GI  P+   P +  +      D    +   K+   
Sbjct: 297 AMGFGLGLERL-------LLILDEEGIEIPE---PVRCEVYIGSMGDNAKLE-AMKLAFN 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D +G+ + +Q   A+ +G     ++G   + ++K++IK    G + ++SL
Sbjct: 346 LRKAGIKAEIDHLGKSVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEISL 405

Query: 432 E--EVINYAS 439
           +  E++N   
Sbjct: 406 DINEIVNIVK 415


>gi|319744352|gb|EFV96713.1| serine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 425

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++   LAD  
Sbjct: 165 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADS- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 224 --PFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|22536539|ref|NP_687390.1| seryl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|25010417|ref|NP_734812.1| seryl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76787984|ref|YP_329077.1| seryl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76798994|ref|ZP_00781192.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77406550|ref|ZP_00783601.1| seryl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77411466|ref|ZP_00787811.1| seryl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|54039691|sp|P67566|SYS_STRA5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|54042042|sp|P67565|SYS_STRA3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123602391|sp|Q3K326|SYS_STRA1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|22533373|gb|AAM99262.1|AE014208_2 seryl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|23094769|emb|CAD45988.1| seryl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76563041|gb|ABA45625.1| seryl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76585644|gb|EAO62204.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77162469|gb|EAO73435.1| seryl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77174857|gb|EAO77675.1| seryl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 425

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++   LAD  
Sbjct: 165 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADS- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 224 --PFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|183982141|ref|YP_001850432.1| histidyl-tRNA synthetase HisS [Mycobacterium marinum M]
 gi|229558696|sp|B2HN79|SYH_MYCMM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|183175467|gb|ACC40577.1| histidyl-tRNA synthetase HisS [Mycobacterium marinum M]
          Length = 420

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 131/431 (30%), Gaps = 41/431 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V   +     R G   + +P  +   L+        D   KE
Sbjct: 6   APKGVPDYVPPDSAQFVAVRDGLLTAARRAGYGHIELPIFEDTALFARGVGESTDVVSKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR D+++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 66  MYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG--RY 122

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +  +    F  LGL    +   S       P   +L
Sbjct: 123 RQLQQVGVEAIGVDDPALDAEVIAIADA---GFRSLGLDGFRLEVTSLGDETCRPQYREL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+   D  +     +       +  +  +   + +   ++    +  A         
Sbjct: 180 LQEFLFGLDLDDDTRRRAALNPLRVLDDKRPEVRAMTAEAPVLLDHLSDVAKQHFDTVLA 239

Query: 267 LFDS---LPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQM 314
             D+            RG++      F       G +  +     + G         +  
Sbjct: 240 HLDALRVPYVINPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMKQLGGQDLSG 299

Query: 315 GSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +G+G  R + A+  E    G         A   +  + +    ++       +  +L 
Sbjct: 300 IGFGLGVDRTMLALRAEGKSVG-------ESARCDVFGVPLSEQAKLTLAV---LAGQLR 349

Query: 374 KVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G  V     D G + G+    AD  G  + ++ G + +    V +K   TG +  +S 
Sbjct: 350 ASGVRVDLAYGDRGLK-GAM-RAADRSGARVALVAGDRDIEAGTVGVKDLGTGEQVSVST 407

Query: 432 EEVINYASHRF 442
           + V++    + 
Sbjct: 408 DSVVDDVISKL 418


>gi|168208634|ref|ZP_02634259.1| histidyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170712977|gb|EDT25159.1| histidyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 415

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 125/430 (29%), Gaps = 36/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R REF       F              +  +    F   GL                +
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFN 177

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATSDV 262
                        +  +        P    D  +      + E      +     +    
Sbjct: 178 EALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFS 237

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY 311
             +   D +  +       I  G  +Y  T + +                 +  DG    
Sbjct: 238 KLKAYLDVMGID-YNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTP 296

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G+  +           D +GI  P+   P +  +      D    +   K+   
Sbjct: 297 AMGFGLGLERL-------LLILDEEGIEIPE---PVRCEVYIGSMGDNAKLE-AMKLAFN 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D +G+ + +Q   A+ +G     ++G   + ++K++IK    G + ++SL
Sbjct: 346 LRKAGIKAEIDHLGKSVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEISL 405

Query: 432 E--EVINYAS 439
           +  E++N   
Sbjct: 406 DINEIVNIVK 415


>gi|219852785|ref|YP_002467217.1| histidyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|254782336|sp|B8GDZ3|SYH_METPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|219547044|gb|ACL17494.1| histidyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 409

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 139/424 (32%), Gaps = 41/424 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKE 92
           Q  +G   +LP   +A   +   +RE   R G  E++ P  +   L+ + SG       E
Sbjct: 3   QRPRGTRDFLPDEMEARRMIEGRMREAVRRWGYREVATPIFEDLSLFTMRSG--QGIIDE 60

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    D+  + +   P     +  ++ +  +     P  +      FR E RP+ G  R 
Sbjct: 61  MYVFQDKGGRDLALRPELTAAVLRMYVNEARVLAK-PLRWCYFADCFRYE-RPQKG--RY 116

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F              +      +  + +R     GL         G +         +
Sbjct: 117 RQFWQFGVELIGADTAAADAEVILVADNAIR---SSGLDYDLKIGHLGLMK-------HL 166

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           LAD GE        ++D        D+ +   L ++ +  T   AA +      +   LP
Sbjct: 167 LADVGEEVRRKVMAYLDKKEFDGLKDYLETAGLAALTDPLTRLLAAETLDEAFAVTGPLP 226

Query: 273 ENKRVSARG--IEVGHIFYF-------GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           E  R+      ++   + Y        G  Y   M       +       +G       +
Sbjct: 227 EEGRIREMAALLDATGVRYSYNFGIARGLDYYTGMVFEGFAKNLGAESQIVGGGAYRLAQ 286

Query: 324 VVAA-----VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           V        V  +    + ++    V   K  ++ + +  +  R    ++       G  
Sbjct: 287 VFGGDDAPSVGFAIGFDRVMVALGEVQTRKQKIVGVVSTAEG-RPFAFRVANAFRTAGIR 345

Query: 379 VFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              D     +G+Q A     AD       V++G + V+   V +K+  TG +  ++++  
Sbjct: 346 ADLDLSDRGLGAQLARAAKEAD-----FAVLIGEREVATGTVTLKNLATGTQTAVTIDLA 400

Query: 435 INYA 438
           +   
Sbjct: 401 VRTV 404


>gi|153815621|ref|ZP_01968289.1| hypothetical protein RUMTOR_01857 [Ruminococcus torques ATCC 27756]
 gi|317502155|ref|ZP_07960332.1| glycine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090328|ref|ZP_08339212.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847052|gb|EDK23970.1| hypothetical protein RUMTOR_01857 [Ruminococcus torques ATCC 27756]
 gi|316896442|gb|EFV18536.1| glycine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330401463|gb|EGG81048.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 466

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 120/369 (32%), Gaps = 76/369 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + LPF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P+     ++      L     LGLK                
Sbjct: 215 FTFRTREFEQMELEFF-CKPDTDLEWFDYWKNFCLNWLSELGLKE--------------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D                   +  +            +  
Sbjct: 259 DEVRYRDHDAEELSFYSKATTDVE----------------FLFPFGWGELWGIADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                                            T+   + K+ Y   +    +GA R+V 
Sbjct: 303 LTQHQNVSGQ---------------------DLTYFDDEAKEKYIPYVIEPSLGADRMVL 341

Query: 327 AVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           A + S++D + I             +  ++AP KI ++ +        +  EK++A+LSK
Sbjct: 342 AFLCSAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKVFAQLSK 398

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++
Sbjct: 399 Y-YNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERVKIEDL 456

Query: 435 INYASHRFS 443
             Y   +F 
Sbjct: 457 KAYFEKKFE 465


>gi|302380356|ref|ZP_07268826.1| glycine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311846|gb|EFK93857.1| glycine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 465

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 120/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + N   +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 157 MFKTFQGVTEDNKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 216

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F       +      +  Y R F +  L ++ +R E         
Sbjct: 217 FIFRTREFEQMELEFFCKPGTDLE------WFDYWRNFCKEFLLNLGIRGE--------- 261

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                           S++ + F   +              +             H+E  
Sbjct: 262 ---------NLRLRDHSQEELSFYSKATTDFEYLFPFGWGELWGIADRTDYDLSKHSEGS 312

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            + L      +                             + +        +G  R+  +
Sbjct: 313 GEKLEYMDPTT----------------------------NEKYIPYCIEPSVGVDRMFLS 344

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            +  ++D + +             ++A +K++++ +        D   +IY  L+K    
Sbjct: 345 FLCDAYDEEQLEDNTTRTVLKIHPALAAYKVAVLPLTKK---LNDKAMEIYNELAK-NFM 400

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D  G P  V +    + D+ V I+ R T  ++ M++EE+I + 
Sbjct: 401 THFDDAG-SIGKRYRREDEAGTPYCVTIDFDTLEDNTVTIRDRDTMEQKRMTVEEIIEFV 459

Query: 439 SHRFS 443
           +    
Sbjct: 460 NKEME 464


>gi|38234279|ref|NP_940046.1| glycyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200542|emb|CAE50237.1| glycyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 461

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/485 (14%), Positives = 138/485 (28%), Gaps = 142/485 (29%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK------ 91
           + + PLG +  +N+         +  A  + +    +    +WV SG   ++        
Sbjct: 34  WDYGPLGMELKENIKKQWWRTFVQARADVVGLDSSIILPRQVWVASGHVATFTDPLVESL 93

Query: 92  --------------------------------------------EMLR--------LADR 99
                                                       +M            D 
Sbjct: 94  HTHKRYRADHLIEAYEAKHGHAPENGLADVPDPETGQPGNWTEPQMFSGLMKTYLGPVDN 153

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                   P   + +   F++ + + R  P F   Q+   FR+E+ P   + R+REF   
Sbjct: 154 EQGLHYLRPETAQGIFVNFKNVMTTARMKPPFGIAQVGKSFRNEITPGNFIFRTREFEQM 213

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +   F +  E +   +N+                                          
Sbjct: 214 EIEYF-VPEELADQKFNE------------------------------------------ 230

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              +    +  F     N D      +        +      +       +   E   V+
Sbjct: 231 ---WVDDCWNWFVDLGINPDNMRRFDVPEEDRAHYSKGTIDMEYKFGFQGNPWGELMGVA 287

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIE 330
            R           T Y L       G D        G+ +   +     G  R + A + 
Sbjct: 288 NR-----------TDYDLGCHIKESGEDLSYFDQTTGERYVPWVIEPSFGLTRALMAFLV 336

Query: 331 SSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            ++                 +     +AP K++++ +   D       E++ A+L +   
Sbjct: 337 DAYCEDEAPNAKGGVDKRVVLKLDPRLAPVKVAVLPLSKKD-TLTPVAEEVAAKLRQFW- 394

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  +E ++L ++ +Y
Sbjct: 395 NVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMTQERVALADLQSY 453

Query: 438 ASHRF 442
            + R 
Sbjct: 454 LAARL 458


>gi|313894765|ref|ZP_07828325.1| histidine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976446|gb|EFR41901.1| histidine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 421

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 135/438 (30%), Gaps = 43/438 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ +  +G    LP    A  +V  +IR   +R G  E+  P  +  +L+        D 
Sbjct: 1   MLTKAPRGTKDILPGEVGAWTHVERVIRGLCDRYGYKEIRTPHFEHTELFQRGIGDGTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRF 147
             KEM    DR D+++   P +       +  H K Y +      + I   FR + RP+ 
Sbjct: 61  VDKEMYTFTDRGDRSLTLRPENTAAAIRAYLEH-KFYADGGLQKLFYIGSMFRYD-RPQA 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDL 206
           G  R REF     +  +   E S     ++ +  L     LGL+ + ++  + G      
Sbjct: 119 G--RMREFHQ---FGVEAVGEESPAVDAEIILLALDFLEELGLEGLTLKLNAVGCPKCRP 173

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           ++   + A   E       D  D    S     D                          
Sbjct: 174 AYRERLQAYFKEYLGELCHDCQDRYTRSPLRILDCKADAAQPFMAGAPAITDCLCAECAA 233

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATF--KGAD---------------- 306
            FD++      +     +      G  Y         +   GA                 
Sbjct: 234 HFDAVQSYLTAAGVSYTLDTRLVRGLDYYTRTAFEIAYPPLGAQSAVAGGGRYDGLVEEL 293

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G        + G+   RV+ A+ + +      + P+      + +I + A         
Sbjct: 294 GGSPTPAVGFAAGM--ERVLLALTQQN------LLPEEPPAADVFIIALGAAAGAAA--- 342

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +   L + G     D  G  + +Q   A+  G    VI+G   +      ++      
Sbjct: 343 FPLLHDLRRGGVRALMDYAGRSMKAQMKQANKAGARYAVILGEDELRSGTAALRDMTESA 402

Query: 426 REDMSLEEVINYASHRFS 443
           +E + L +++        
Sbjct: 403 QETIPLADMVQRLISEVK 420


>gi|302876579|ref|YP_003845212.1| glycyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307687254|ref|ZP_07629700.1| glycyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302579436|gb|ADL53448.1| glycyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 463

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 126/366 (34%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F+S    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKAEIYLRPETAQGIFVNFKSVQRTSRKKIPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P      +     SY + +    LK++ M+           
Sbjct: 215 FIFRTREFEQMELE-FFCKPGTDLEWF-----SYWKNYCFNFLKNLSMK----------- 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +   D GE ++               + + +  S       +            +  
Sbjct: 258 EENLRFRDHGEEEL---------------SFYSNATSDIEFKFPFGWGELWGIADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVA 326
            +   ++                           +      + +   +    +GA RV+ 
Sbjct: 303 LNQHAKHSGQ---------------------DLNYLDPVTNEKYVPYVIEPSLGADRVLL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        +   ++Y +LSK   
Sbjct: 342 AFLCDAYDEEELEDGDSRTVLRLHPALAPFKAAVMPLSKK---LSEKSLEVYEKLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +D+ G  IG ++   D +G P  + +    + D  V ++ R T  +  + ++E+  +
Sbjct: 398 NVDYDEAG-SIGKRYRREDEIGTPYCITIDFDTLEDDSVTVRDRDTMNQVRIKIDELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEEKLE 462


>gi|160895177|ref|ZP_02075950.1| hypothetical protein CLOL250_02737 [Clostridium sp. L2-50]
 gi|156863211|gb|EDO56642.1| hypothetical protein CLOL250_02737 [Clostridium sp. L2-50]
          Length = 469

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 120/368 (32%), Gaps = 74/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 158 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 217

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      ++      +     LG+K   MRA       D S
Sbjct: 218 FTFRTREFEQMELEFF-CEPGTDLEWFDYWRSFCINWLKDLGIKDEEMRA------RDHS 270

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G T +     F       E     D    +    Q  +             
Sbjct: 271 PEELCFYSKGTTDIEFLFPFGW----GELWGIADRTDYDLTQHQTVSGEPMDY------- 319

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                             F     + +   +    +GA RV  A
Sbjct: 320 ----------------------------------FDDEKKEKYIPYVIEPSLGADRVTLA 345

Query: 328 VIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            + +++D + I             +  ++AP KI ++ +        +  EK+YA L K 
Sbjct: 346 FLCAAYDEENIGTEEKPDVRTVLHFHPALAPVKIGVLPLSKK---LGEEAEKVYAELCKY 402

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++ 
Sbjct: 403 -YNCEYDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERVKIEDLK 460

Query: 436 NYASHRFS 443
            Y   +F 
Sbjct: 461 AYFEKKFE 468


>gi|16800623|ref|NP_470891.1| histidyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|32130133|sp|Q92BJ3|SYH_LISIN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|16414042|emb|CAC96786.1| histidyl-tRNA synthetase [Listeria innocua Clip11262]
          Length = 425

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 148/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        + +   +        E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLESAFNKVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFLDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMEFFRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKKYLTALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVK 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +GIG  R++ A+     +   I  P++  P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGIG-FGIGVERILLAL-----EKAEINIPET-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  ++ +Q   A+       VI+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKLKAQLKDANRKKAIYTVILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   +I   ++
Sbjct: 405 EQEAVSETTIIEKLTN 420


>gi|77414886|ref|ZP_00790994.1| seryl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77159061|gb|EAO70264.1| seryl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 425

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++   LAD  
Sbjct: 165 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADS- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 224 --PFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEESYQELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|326802688|ref|YP_004320506.1| serine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651068|gb|AEA01251.1| serine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 432

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 10/220 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG +    +   + ++  + G +EM  P L +      +G++  + +++ ++ +
Sbjct: 163 FVYYKGLGARLERALYNFMLDQHQKEGYMEMITPFLVNDQAMYGTGQFPKFTEDVYQITN 222

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
              + +   PT E  +T+ F   I    +LP     +   FR E     R   G++R  +
Sbjct: 223 E-GQDLTLIPTAEVPLTNYFAKEILKEEDLPIRVTALSPCFRSEAGSAGRDTRGLIRMHQ 281

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +      TP+ S      M  +   I   LGL    +   +G +G   +     E 
Sbjct: 282 FQKVEMVKV-ATPDQSFDELEAMTKNAENILDLLGLPYRRIILCTGDMGFSAAKTYDIEV 340

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            + A     ++    + +DF        + DI     +  
Sbjct: 341 WMPAQNTYREISSCSNCVDFQARRAQVRYRDIDGKTQLAH 380


>gi|225869128|ref|YP_002745076.1| seryl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259511681|sp|C0ME07|SYS_STRS7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225702404|emb|CAX00264.1| seryl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 425

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKNLGARLERALYNFMLDEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
             + +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTSFVLIPTAEVPLTNYYRGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPETSYEELEKMTANAENILQKLELPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|153853789|ref|ZP_01995145.1| hypothetical protein DORLON_01136 [Dorea longicatena DSM 13814]
 gi|149753539|gb|EDM63470.1| hypothetical protein DORLON_01136 [Dorea longicatena DSM 13814]
          Length = 466

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 124/368 (33%), Gaps = 74/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + LPF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P+     ++      L     LGLK                
Sbjct: 215 FTFRTREFEQMELEFF-CKPDTDLEWFDYWKKFCLNWLSSLGLKE--------------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D                  +   +   +     + +   
Sbjct: 259 DEVRYRDHDKEELSFYSKATTD------------------VEFLFPFGWGELWGIADRTD 300

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +D     K               G   +      F     + +   +    +GA R+V A
Sbjct: 301 YDLTQHQKVS-------------GQDLT-----YFDDETKEKYIPYVIEPSLGADRMVLA 342

Query: 328 VIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            + S++D + I             +  ++AP KI ++ +        +  EK++A+LSK 
Sbjct: 343 FLCSAYDEEEIGTEEKPDTRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKVFAQLSKK 399

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++ 
Sbjct: 400 -YNCEYDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERIKIEDLD 457

Query: 436 NYASHRFS 443
            Y   +F 
Sbjct: 458 AYFEKKFE 465


>gi|210617161|ref|ZP_03291428.1| hypothetical protein CLONEX_03650 [Clostridium nexile DSM 1787]
 gi|210149436|gb|EEA80445.1| hypothetical protein CLONEX_03650 [Clostridium nexile DSM 1787]
          Length = 476

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 128/366 (34%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 168 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 227

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       +  +Y K F   L     LG+K   ++A       D 
Sbjct: 228 FTFRTREFEQMELEFFCEPGTDLEWFAYWKQFC--LDWLKSLGIKEEEIKA------RDH 279

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S E +       T V     F    +       D  ++ +  V +    Y          
Sbjct: 280 SAEELCFYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQEVSKQDMTY---------- 329

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                                              F     + +   +    +GA R+V 
Sbjct: 330 -----------------------------------FDDEKKEKYIPYVIEPSLGADRMVL 354

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A + S++D + +          +  ++AP KI ++ +        +  EK++A+LSK   
Sbjct: 355 AFLCSAYDEEELEGGDVRTVLHFHPALAPIKIGVLPLSKK---LNEGAEKVFAQLSKY-Y 410

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +DD G  IG ++   D +G P  +    +   D  V ++ R T  +E + +E++  Y
Sbjct: 411 NCEFDDRGN-IGKRYRRQDEIGTPFCITYDFESEEDGAVTVRDRDTMEQERVKIEDLKTY 469

Query: 438 ASHRFS 443
              +F 
Sbjct: 470 FEKKFE 475


>gi|125719062|ref|YP_001036195.1| histidyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166228621|sp|A3CR40|SYH_STRSV RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125498979|gb|ABN45645.1| Histidyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 426

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 138/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAD---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD       + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADNFKAKTLITLGESEVESGRVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|299143683|ref|ZP_07036763.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518168|gb|EFI41907.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 437

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 146/441 (33%), Gaps = 52/441 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +   IR+   + G + +  P ++ +++ +  G  ++  K++ R 
Sbjct: 11  PGFMELLPKEQILFNEMMDTIRKNFEKHGFLPIDTPAIEKSEVLLAKGGGET-EKQIYRF 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             + D  M        V    +     +  + PF  Y I   +R E + + G  R REF 
Sbjct: 70  T-KGDTDMSLR-FDLTVPLARYTVEHFNDLSFPFRRYHIGKVYRGE-KAQKG--RFREFY 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI-------------- 202
             D  +         +      V Y   F  LG     +R  +  I              
Sbjct: 125 QCDIDTIGNEKLDILNDAEFPVVIYH-TFKDLGFDDFTIRINNRKILKGFFESLNILDSV 183

Query: 203 ------------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                       G +   E   L D G  +    K      I   N++  D +    I  
Sbjct: 184 DVLRAVDKIDKIGREKVKE--ELCDNGIEEDIAVKIIDFILISGTNSEIFDALDRLEIDN 241

Query: 251 -QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----- 304
             +    +    V       ++PE        I  G  +Y GT Y   +   +       
Sbjct: 242 EIFNEGLSELKQVVKYITEFAVPEKNFTVDLKIARGLDYYTGTVYETTLD-NYSNVGSVC 300

Query: 305 -----ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                 +   +Y      G+G    ++ +    ++ K I      +   + +I +     
Sbjct: 301 SGGRFDNLASYYTDKKLPGVGLSIGLSRLFYQLNEAKIIEAKKK-SLIDLIVIPMTG--- 356

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+ ++L   G +        +I  +F  A+ L  P  ++VG   V   K  +K
Sbjct: 357 -FVDEAIKLVSKLRDGGINTIIYTEDAKIAKKFKYANALEVPYTLVVGENEVKTEKYALK 415

Query: 420 HRLTGIREDMSLEEVINYASH 440
             +TG +E++SL E+I+    
Sbjct: 416 DMVTGNQEELSLSEIISRIKE 436


>gi|160878710|ref|YP_001557678.1| histidyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|189082289|sp|A9KIA5|SYH_CLOPH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160427376|gb|ABX40939.1| histidyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 417

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 129/435 (29%), Gaps = 49/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI Q  KG   W          +  + R+        E+  P  +   L+        D 
Sbjct: 1   MITQRPKGTLDWYGDNMYKRTLIEELARKLCKAYNIKEIITPVFEHTILFQRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++   P         +  +     + P   + +   FR E  P+ G
Sbjct: 61  VQKEMYTFLDKKDRSITLKPEGTAGAIRAYLENNLYAESGPTKLFYVTPAFRYEQ-PQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+               ++     +  ++L+    +GLK    +     IG     
Sbjct: 120 --RLRQHHQFGVEFVGSKSPLAEVELITLITTFLK---EIGLK--KAKLHINSIGCK--- 169

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                A   E  +   +   D    +               ++              +  
Sbjct: 170 --NCRATYNEALLTYLRKHEDHLCSTCKERMQKNPLRVIDCKESACKEIVKDAPRTIEYL 227

Query: 269 DSLPENK--------RVSARGIEVGHIFYFGTKYSLPMSATFKGADG------------- 307
           D   +N                E+      G  Y       F   DG             
Sbjct: 228 DEECKNHFEELQSLLHTLNIPFEIDTGIVRGLDYYTKTVFEFVNEDGFTLCGGGRYDGLV 287

Query: 308 ----KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   +    +G+G  R++  +       K  +   S+ P     + +       + 
Sbjct: 288 HEIDEKQDIPSVGFGMGIERILYFL------EKEEV---SLPPQPAIELYVGILGAEAKA 338

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +  ++  +L   G     D M   + +Q   A+ +G    VI+G+  ++     +K+  T
Sbjct: 339 SAYQLVTKLRGEGIITETDYMDRSVKAQMKYANKIGAKNTVILGADELAKGLANVKNMET 398

Query: 424 GIREDMSLEEVINYA 438
           G + ++ LE++ ++ 
Sbjct: 399 GEQTELPLEDIADFI 413


>gi|32476484|ref|NP_869478.1| glycyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|32447029|emb|CAD78935.1| glycyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 558

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 122/369 (33%), Gaps = 46/369 (12%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +         +      P   + +   F++ + S R  +PF   Q+   FR+E+ PR 
Sbjct: 215 MFKTTLGALGGEEDTTFLRPETAQGIFVNFKNVVDSSRVRIPFGIGQVGKSFRNEITPRN 274

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F   P  S+  Y       +  + +LGL +  +      I  +  
Sbjct: 275 FTFRSREFEQMEIEFFCH-PNQSQEWYRYWRDRRMAWYTKLGLSNESL------IMREHH 327

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G   +  +  F+      E          +           AT+ +  E  
Sbjct: 328 TEELAHYSVGTADIEYAFPFLPEGEYGELEGIAHRGDFDLRSHMEGKLDPATNPMTVELN 387

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               P+++               G+   L                 +     GA R   A
Sbjct: 388 EHGKPKHR---------------GSGKDLAYRDDITNE---KFVPHVIEPSAGADRAALA 429

Query: 328 VIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  ++                 +     +AP K ++  +   D    +  ++IY  L +
Sbjct: 430 FLCEAYTEDEAPDENGKMQTRTVMKLDPRLAPIKAAVFPLVKKD-GMPEVAQEIYGALKE 488

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +VF+D  G  +G ++   D  G P  + V    ++D  V I+ R T  +  + +++V
Sbjct: 489 H-YNVFYDAKGA-VGRRYRRQDEAGTPYCITVDGDSLTDKTVTIRDRDTLEQTRVKIDDV 546

Query: 435 INYASHRFS 443
           ++    R  
Sbjct: 547 VSEIQSRMK 555



 Score = 39.9 bits (92), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 22/100 (22%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP------ 72
           L  R G + Q S      +G + + PLG +   N+      +   +G  E+  P      
Sbjct: 29  LCKRRGFLFQSSEIYGGVQGFWDYGPLGVELKRNLKDAWWHDM-ISGHNELVSPAGAPST 87

Query: 73  ---------TLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
                     +    +W  SG YD +   M+   +   + 
Sbjct: 88  FEMVGLDCTIIMHPQVWKCSGHYDLFHDHMVDCRESKKRY 127


>gi|320527308|ref|ZP_08028493.1| glycyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320132332|gb|EFW24877.1| glycyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 459

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 76/460 (16%), Positives = 147/460 (31%), Gaps = 47/460 (10%)

Query: 20  IASHKLMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSV 71
           I SH     TG + Q S+   G+   + + PLG    DN+    +++  Q      E+  
Sbjct: 10  IVSHAK--NTGFVFQGSEIYGGLSNTWDFGPLGVNLKDNIKRAWQKKFIQEDPNNEEIQA 67

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
             L +  +W  SG    +   ++     + +        E            S   +   
Sbjct: 68  AILMNPKVWEASGHLKGFSDPLMDCKQCHTRHRADQ-LIESFSNGTVNPEGWSNEQMEQY 126

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
                +   D     F  +R  +F +    +F  T E SK++      +   +F      
Sbjct: 127 IKDNNVPCPDCGGHNFTSIR--QFNLM-FKTFQGTLEDSKNTIYLRPETAQGMFVDFKQV 183

Query: 192 SIPMRAESG----PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +   R +       IG    +E         T+ F   +   F  P  + ++        
Sbjct: 184 ARAYRKKLPFGICQIGKSFRNEITPGNFIFRTREFEQMEMEFFCKPGTDDEWFPYWRNFC 243

Query: 248 IVEQ-----WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSA 300
           +                     E  F S              G ++     T Y L    
Sbjct: 244 MDWIVKLGGNPENLRFRDHEKEELSFYSKGTTDIEYKFPWGWGEVWGIADRTDYDLTQHQ 303

Query: 301 TFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDS 343
              G D         + +   +    +G  R+       ++D + +          +   
Sbjct: 304 NTSGKDLTYLDPITNEKYLPYVVEPAVGVERLFFMFFTDAYDEETLENGETRVVMRFNPV 363

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP K +++ ++       +  E+I   LS     V +D+ G  IG ++   D +G P  
Sbjct: 364 LAPVKAAILPLRKK---YAEKAEEIRHELS-YDFTVTYDEAG-SIGKRYRRQDEVGTPFC 418

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + +  + + D  V I++R +  +E M++EEV N       
Sbjct: 419 ITIDEQTMEDGTVTIRYRDSMEQERMTVEEVRNKICKEIR 458


>gi|169629956|ref|YP_001703605.1| histidyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|169241923|emb|CAM62951.1| Histidyl-tRNA synthetase [Mycobacterium abscessus]
          Length = 424

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 141/437 (32%), Gaps = 43/437 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KGI  ++P        V   + E+    G   + +P  +   L+        D   
Sbjct: 6   FSAPKGIPDYVPPDSAQFLAVRDGLLEQARLAGYGYIELPVFEDTGLFARGVGESTDVVS 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 66  KEMYTFADRGDRSVTLRPEGTASVMRAVIEHGLDRGQLPAKLRYAGPFFRYE-RPQAG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    +  LGL    +   S       P   
Sbjct: 123 RYRQLQQVGVEAIGVDDPALDAEVIAIADA---GYRSLGLTGFRLEISSLGDASCRPQYR 179

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     ++      +  +  +  ++ +   ++    +  A       
Sbjct: 180 ELLQEFLFGLDLDEATRERARINPIRVLDDKRPEVREMTANAPLMLDHLSGEAKAHFEQV 239

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     V+ R             E  H    G +  +     + G  A      
Sbjct: 240 LSHLDALGVQYVVNPRLVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQS 298

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    +G+G  R V A+  E    G            ++  + +    Q  +    K+ A
Sbjct: 299 LSGIGFGLGVDRTVLALRAEGVTVGDSGRC-------EVFCVPLG---QDAKSVLVKVAA 348

Query: 371 RLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +L   G        D G + G+    AD  G  + ++ G + + +  +E+K    G+++ 
Sbjct: 349 QLRGAGIRTDIAYGDRGLK-GAM-RGADRSGASIALVAGDREIGEGNIELKTLADGVQQP 406

Query: 429 MSLEEVINYASHRFSNN 445
           + +  ++   + R ++ 
Sbjct: 407 VPIGSIVGEVTARLASR 423


>gi|168215559|ref|ZP_02641184.1| histidyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182382324|gb|EDT79803.1| histidyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 415

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 67/430 (15%), Positives = 125/430 (29%), Gaps = 36/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R REF       F              +  +    F   GL                +
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFN 177

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATSDV 262
                        +  +        P    D  +      + E      +     +    
Sbjct: 178 EALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFS 237

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY 311
             +   D +   +      I  G  +Y  T + +                 +  DG    
Sbjct: 238 KLKAYLDVMGI-EYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTP 296

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G+  +           D +GI  P+   P +  +      D    +   K+   
Sbjct: 297 AMGFGLGLERL-------LLILDEEGIEIPE---PVRCEVYIGSMGDNAKLE-AMKLAFN 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D +G+ + +Q   A+ +G     I+G   + ++K++IK    G + ++SL
Sbjct: 346 LRKAGIKAEIDHLGKSVKAQMKYANKIGAKYTFIIGDSEIEENKIKIKRMSDGEQFEISL 405

Query: 432 E--EVINYAS 439
           +  E++N   
Sbjct: 406 DINEIVNIVK 415


>gi|51893560|ref|YP_076251.1| histidyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|81692042|sp|Q67LN9|SYH_SYMTH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|51857249|dbj|BAD41407.1| histidyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 432

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 131/422 (31%), Gaps = 51/422 (12%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  I RE     G  E+  P ++  DL++       D   KEM  +  R D      
Sbjct: 26  WQRLEEIFREVARLYGYQELRPPMVEYVDLFIHGVGATTDIVTKEMFNITPRGDDPDARR 85

Query: 108 PTHEEVMTD-IFRSHIKS---YRNLPFTFYQIQLKFRDE--LRPRFGVMRSREFLMKDAY 161
                  T  + R+ +++       P   +     FR E   + RF     R F   D  
Sbjct: 86  MAMRPEFTAGLVRAWLENGLYNNPQPTKIFAYGPAFRYENVQKGRF-----RGFHQLDVE 140

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIG 203
            F             +    L +  RLGL  + +   S                   P  
Sbjct: 141 VFGAQDPAVDAE---VIKLGLDVVARLGLTGLVVSVNSIGCPQCRPRYRQALQDHFRPHL 197

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G+L  +     +    ++   K   D P         D +  +             +   
Sbjct: 198 GELCEDCNTRFEKNPLRLLDCKRDADHPAQRTAPVTLDYLCDDCRRHWEGLLSHLAAMGI 257

Query: 264 NEKLFDSLPENKRVSARGI-EVGHIFYFGTKYSLPMSATFKG----ADGKDHYVQMGSYG 318
             ++   +        + + EV H    G + +L     + G      GK        +G
Sbjct: 258 PYQIDTRIVRGLDYYTKTVFEVLHP-KLGAQSALWGGGRYDGLIEIVGGKPTPGV--GFG 314

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           +G  RV+  +     + +G+  P +  P   + +  +    +  R    K+   L   G 
Sbjct: 315 MGMERVLMVL-----EEEGLTAPFADRPRLDVFVATLG---EAARPVGLKLLYALRDAGL 366

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D +G  + +Q   A        VI+G   V      +KH   G +E + L+++I++
Sbjct: 367 SADIDYLGRSLKAQMKYAGKQNSRYVVILGEDEVRQGVASVKHMDEGTQESVPLDQIISH 426

Query: 438 AS 439
             
Sbjct: 427 LR 428


>gi|327543225|gb|EGF29659.1| glycyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 555

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 122/369 (33%), Gaps = 46/369 (12%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +         +      P   + +   F++ + S R  +PF   Q+   FR+E+ PR 
Sbjct: 212 MFKTTLGALGGEEDTTFLRPETAQGIFVNFKNVVDSSRVRIPFGIGQVGKSFRNEITPRN 271

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F   P  S+  Y       +  + +LGL +  +      I  +  
Sbjct: 272 FTFRSREFEQMEIEFFCH-PNQSQEWYRYWRDRRMAWYTKLGLSNESL------IMREHH 324

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G   +  +  F+      E          +           AT+ +  E  
Sbjct: 325 TEELAHYSVGTADIEYAFPFLPEGEYGELEGIAHRGDFDLRSHMEGKLDPATNPMTVELN 384

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               P+++               G+   L                 +     GA R   A
Sbjct: 385 EHGKPKHR---------------GSGKDLAYRDDITNE---KFVPHVIEPSAGADRAALA 426

Query: 328 VIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  ++                 +     +AP K ++  +   D    +  ++IY  L +
Sbjct: 427 FLCEAYTEDEAPDENGKMQTRTVMKLDPRLAPIKAAVFPLVKKD-GMPEVAQEIYGALKE 485

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +VF+D  G  +G ++   D  G P  + V    ++D  V I+ R T  +  + +++V
Sbjct: 486 H-YNVFYDAKGA-VGRRYRRQDEAGTPYCITVDGDSLTDKTVTIRDRDTLEQTRVKIDDV 543

Query: 435 INYASHRFS 443
           ++    R  
Sbjct: 544 VSEIQSRMK 552



 Score = 39.9 bits (92), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 22/100 (22%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP------ 72
           L  R G + Q S      +G + + PLG +   N+      +   +G  E+  P      
Sbjct: 26  LCKRRGFLFQSSEIYGGVQGFWDYGPLGVELKRNLKDAWWHDM-ISGHNELVSPAGAPST 84

Query: 73  ---------TLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
                     +    +W  SG YD +   M+   +   + 
Sbjct: 85  FEMVGLDCTIIMHPQVWKCSGHYDLFHDHMVDCRESKKRY 124


>gi|320161174|ref|YP_004174398.1| histidyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319995027|dbj|BAJ63798.1| histidyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 426

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 142/440 (32%), Gaps = 40/440 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I    KG   + P      + + A IRE   + G  E   P L+  DL+      +   +
Sbjct: 4   IVPSVKGTRDFYPEIMAVRNWLYARIREVSEKFGYQEYEGPFLERVDLYAAKSGEELVNE 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     DR    +   P     +  +     ++    P  ++     +R E RP+ G  R
Sbjct: 64  QSFVFQDRGGDYIALRPELTPTLARMVAQR-QNELVYPLRWWSFGPFWRYE-RPQKG--R 119

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA--ESGPIGGDLSHE 209
           +REF     ++ D+    +  +  ++    +  F  +GL S  ++    +  +       
Sbjct: 120 TREFFQ---WNIDIIGSQAIEADAELLAVAVEFFKSVGLTSQQVKLLVNNRRLMDVQLEN 176

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-------ISLNSIVEQWTAPYAATSDV 262
             +                  P+P       D          L S++   +    +    
Sbjct: 177 LGIREGQKRDVFRLIDRKEKLPLPEWRQYAFDFGLTQEQLSGLESLLVNESLWETSDELK 236

Query: 263 HNEKLFDSLPENKRVSA-RGIEVGHIFYFGTKYSLP-------------MSATFKGADGK 308
              +L + +   + V     I  G  +Y GT +                         G+
Sbjct: 237 RVFELLEGMGIREYVEFAPQIIRGLDYYTGTVFEAKDLDGGRSILGGGHYDNLVANVGGE 296

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                    G     V+  ++   + GK        AP ++ L+ +   +++ +     +
Sbjct: 297 PLPGV----GFAMGDVMITLVLEKY-GKLPAL--ETAPAQV-LVTVFDLERLPQSFA--L 346

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL + G  V W     ++  Q   AD  G    VI G   +S  +V +K      +E 
Sbjct: 347 AARLREQGLKVVWYPEAAKLQKQLKFADRAGIRFAVIYGPDEISAGQVALKDLHQRNQEL 406

Query: 429 MSLEEVINYASHRFSNNRPV 448
           +S+E V        + +  V
Sbjct: 407 VSVENVGERVRQILAQSERV 426


>gi|291522457|emb|CBK80750.1| glycyl-tRNA synthetase, dimeric type [Coprococcus catus GD/7]
          Length = 465

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 122/369 (33%), Gaps = 76/369 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y + F    L+++ ++ +         
Sbjct: 214 FTFRTREFEQMELEFFCEPDTDLE------WFAYWKEFCINWLQTLGIKPD--------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E  V     E   F SK   D                   +             H E  
Sbjct: 259 -EMRVRDHEAEELSFYSKATSDIE--------FLFPFGWGELWGIADRTNYDLSRHMEVS 309

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            +                               T+     K+ Y   +    +GA RVV 
Sbjct: 310 GE-----------------------------DLTYFDEGKKEKYIPFVIEPSLGADRVVL 340

Query: 327 AVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           A +  ++D + I             +  ++AP KI ++ +        +  E +YA LSK
Sbjct: 341 AFLCGAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---LGEKAEAVYAELSK 397

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++
Sbjct: 398 -NWNCEYDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGCVTVRDRDTMEQERVKIEDL 455

Query: 435 INYASHRFS 443
             Y   + +
Sbjct: 456 TAYFMEKLA 464


>gi|319945852|ref|ZP_08020102.1| histidine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319747917|gb|EFW00161.1| histidine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 424

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 144/435 (33%), Gaps = 59/435 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEGFARETFKKYNYAEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKVYYIGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M     + F  +G++++ +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAD---QFFKEIGIENVVLHLNTLGSTASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 TAYRQALIDYLLPMKDQLSKDSQRRLEENPLRVLDSKEKEDKQAVENAPSILDYLDEES- 233

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA- 305
                      +                   RG++     IF F TK          G  
Sbjct: 234 ------QEHFDAVRAMLDGLGIDYVIDTNMVRGLDYYNHTIFEFVTKVDGNELTVCAGGR 287

Query: 306 -DGKDHYV-----QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            DG   Y          +G+G  R++  +     D +G+  P   A   + +  + +  +
Sbjct: 288 YDGLVEYFGGPATPGFGFGMGLERLLLIL-----DKQGVELPVE-ASLDVYVAVLGSEAE 341

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V   A  ++   L + G     D +G ++ +QF  AD+ G    + +G   V   ++ +K
Sbjct: 342 V---AALELVQALRRQGFIAERDYLGRKLKAQFKSADVFGAKTIIALGGSEVESGQITVK 398

Query: 420 HRLTGIREDMSLEEV 434
           +  T      S+E+V
Sbjct: 399 NNQTRQEVTTSIEDV 413


>gi|313124951|ref|YP_004035215.1| glycyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312291316|gb|ADQ65776.1| glycyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 596

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 80/545 (14%), Positives = 149/545 (27%), Gaps = 146/545 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWV-------------- 81
            G Y++ P G     NV    RE    + G +E+  PT+    ++               
Sbjct: 32  AGFYTYGPQGAALKSNVEDAWRERFTVQEGNLEIDAPTIMPEPVFEASGHLDTFDDMLVE 91

Query: 82  -----ESGRYDSYGKEMLRLADRN------------------------------------ 100
                ES R D   ++   L D                                      
Sbjct: 92  CPECAESHRADHLIEDNSDLEDAETLSLEEAAEEIAALDLVCPNCGAELAGQSVDNFNLM 151

Query: 101 ----------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
                     D   +   T + +  +  R    +   LPF   Q+   +R+E+ PR  ++
Sbjct: 152 FETNIGPGSSDPGYLRPETAQGIFVEFPRIKEYARNRLPFGVTQVGRAYRNEISPRKSIV 211

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFV----------------SYLRI---------- 184
           R+REF   +   F + PE  +   + +                   Y+            
Sbjct: 212 RTREFTQAELEQF-IDPERDEPDLSAVEDVAVLLYPATEQQKDDGDYIETTIGAAVEDGS 270

Query: 185 ----------------FHRLG-----LKSIPMRAESGPIGGDLSH--EFIVLADTGETQV 221
                           + R+G      +     A             E  V  D  E   
Sbjct: 271 IGNAWLGYFLGIAQEWYERVGVDMDRFRFRQHLAGERAHYSSDCWDAESEVDGDWIEIAG 330

Query: 222 FCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           F  +   D          D+      +       A       V   K   +  + K    
Sbjct: 331 FSYRSDYDLSKHAEYSEEDYTVFRQYDEPKTVERAVVDPDMSVLGPKFGGAAGDVKDALE 390

Query: 280 R--------------GIEV-GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           R               +EV G      T      +   +  +G+     +     G  R 
Sbjct: 391 RLAERDPDAFDGDEVTVEVDGETHTVETD-VTNFAVEEQTINGEHITPHVVEPSFGVDRT 449

Query: 325 VAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           V  ++  +++           +     VAP  + +  + ++     D  ++I   L   G
Sbjct: 450 VYTLLAHAYEEDEVDDEERTYLSLSPEVAPRDVGVFPLVSNVPELVDLADEIVDDLRAAG 509

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS---KVEIKHRLTGIREDMSLEE 433
             V +DD G  IG ++   D +G P  + V    +       V ++ R +G +  + +  
Sbjct: 510 LSVVYDDSG-SIGRRYRRQDEVGTPFCITVDRDGLESDGETTVTVRERDSGRQIRVPVSA 568

Query: 434 VINYA 438
           + +  
Sbjct: 569 LADEL 573


>gi|256372043|ref|YP_003109867.1| glycyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008627|gb|ACU54194.1| glycyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 448

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 145/450 (32%), Gaps = 66/450 (14%)

Query: 28  RTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   ++   G    Y + PLG   L  +           R   + +    L    +
Sbjct: 16  RRGFIFPSAELYGGFRSAYDFGPLGVLLLRKIREAWWSYMVRERREVVGLEASILTPPAI 75

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  + +   ++     +++             D       S    P       L F
Sbjct: 76  WRASGHLEHFTDPLVDCRSCHERWRADQ-------IDGVCPKCGSRDLTPAR--AFNLMF 126

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R  + P  G          +     L PE ++     MFV    +   + L+     A+ 
Sbjct: 127 RTFVGPVEG----------EGAEAYLRPETAQ----GMFVDAQSVARAMRLRPPFGIAQ- 171

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             IG    +E         T+ F   +   F  PS   +  D      +           
Sbjct: 172 --IGKSFRNEITPGNFVFRTREFEQMEMEYFVHPSVAAEAHDFWIAERLRWYQELGLEGD 229

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD--- 306
                E   D L      S+R +++   F +G          T + L   A   G D   
Sbjct: 230 WLRLREHDADEL---SHYSSRTVDIEFRFPWGYGELEGIANRTDFDLRAHAAASGEDLSV 286

Query: 307 -----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLIN 353
                 + +Y        G  R   A + +++            +     +AP+ ++++ 
Sbjct: 287 LDPVTEERYYPSTIEPAGGVTRAAMAFLLAAYHVDEVNGESRTVLRLSPHLAPYTVAVLP 346

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     +  +   +I+A L+ +  DV +D+  + IG ++   D +G P  V V    + D
Sbjct: 347 LSRKPALV-ELAHEIFADLATI-VDVDYDET-QSIGRRYRRQDEIGTPWCVTVDFDSLED 403

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V ++ R T  +  + + +++ +   R +
Sbjct: 404 RAVTVRDRDTLEQVRIPVADLVAHVRERLA 433


>gi|331091565|ref|ZP_08340402.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403730|gb|EGG83284.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 462

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 127/366 (34%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       +  +Y K F   L   + LGLK   +RA       D 
Sbjct: 214 FTFRTREFEQMELEFFCEPGTDLEWFAYWKKFC--LDWLYSLGLKEDEVRA------RDH 265

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S E +       T V     F    +       D  +S +  V +    Y          
Sbjct: 266 SPEELCFYSKATTDVEFLFPFGWGELWGIADRTDYDLSQHQEVSKQDMTY---------- 315

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                                              F     + +   +    +GA R+V 
Sbjct: 316 -----------------------------------FDDEKKEKYIPYVIEPSLGADRMVL 340

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A + S++D + +          +  ++AP KI ++ +        +  EK++A LSK   
Sbjct: 341 AFLCSAYDEEELEGGDVRTVMHFHPALAPIKIGVLPLSKK---LNEGAEKVFAELSKT-Y 396

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++  Y
Sbjct: 397 NCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERIKIEDLKAY 455

Query: 438 ASHRFS 443
              +F 
Sbjct: 456 FEKKFE 461


>gi|168214146|ref|ZP_02639771.1| histidyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714344|gb|EDT26526.1| histidyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
          Length = 415

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 126/430 (29%), Gaps = 36/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R REF       F              +  +    F   GL                +
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFN 177

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATSDV 262
                        +  +        P    D  +      + E      +     +    
Sbjct: 178 EALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFS 237

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY 311
             +   D +   +      I  G  +Y  T + +                 +  DG    
Sbjct: 238 KLKAYLDVMGI-EYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTP 296

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G+  +           D +GI  P+   P +  +      D+   +   K+   
Sbjct: 297 AMGFGLGLERL-------LLILDEEGIEIPE---PVRCEVYIGSMGDRAKLE-AMKLAFN 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D +G+ + +Q   A+ +G     ++G   + ++K++IK    G + ++SL
Sbjct: 346 LRKAGIKAEIDHLGKSVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEISL 405

Query: 432 E--EVINYAS 439
           +  E++N   
Sbjct: 406 DINEIVNIVK 415


>gi|258515495|ref|YP_003191717.1| histidyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779200|gb|ACV63094.1| histidyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 419

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 141/435 (32%), Gaps = 39/435 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP   +    + ++I++  +  G  E+  P  +  DL++       D 
Sbjct: 1   MLTTRPRGTNDILPGEVEKWQYIESVIKQLCHEYGFAELRTPVFEHTDLFIRGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR ++++   P         +  +       P   Y     FR + RP+ G
Sbjct: 61  VEKEMYTFTDRGERSITLRPEGTASAVRAYLENKLYAGVQPVKLYYTGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPI 202
             R R+F       F             M    +  + RLGLK + +R       +  P+
Sbjct: 120 --RFRQFHQFGVEVFGSDEPAVDAEVIAM---AMDFYTRLGLKDLELRINSVGCPDCRPV 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             +    F       E    C   +   P+   +        L +               
Sbjct: 175 LREKLQAFFKP-KLNELCANCQGRYNRNPLRILDCKNTGCRLLGAGAPVTLDCLCENCAK 233

Query: 263 HNE------KLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--ADG 307
           H         L D          RG++              G + S+     + G   + 
Sbjct: 234 HFSLVKKYLSLLDISFTVDSSLVRGLDYYTHTAFEVMARDIGAQSSIGGGGRYNGLIEEC 293

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    Y +G  RV+        + +GI++P ++ P     + + A      +   K
Sbjct: 294 GGAPAPGIGYAVGLERVLLIA-----EKQGIVFPAALGPE----VFVAAAGAGTEETAFK 344

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L + G     D +G  + +Q   A  L     VI+G   +++  + +K  L G +E
Sbjct: 345 VLFNLRRTGLSADKDYLGRSLKAQMKHAGKLAARFTVIIGESELAEGLLLVKDMLAGKQE 404

Query: 428 DMSLEEVINYASHRF 442
            + ++ V  Y  +  
Sbjct: 405 KVPVQAVAEYIKNSL 419


>gi|290579784|ref|YP_003484176.1| putative seryl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996683|dbj|BAH87284.1| putative seryl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 426

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADND 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S +   KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEDSYNELEKMTANAENILQKLELPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|289522218|ref|ZP_06439072.1| histidine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504054|gb|EFD25218.1| histidine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 422

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 136/437 (31%), Gaps = 43/437 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSY 89
           I +  +G+   LP        V    R+     G  E+ +P  +  +L+        D  
Sbjct: 3   IIKAPRGVRDILPDEAWKWAYVLETSRKVAGFFGYNEVHLPLFEHTELFSRGIGDSTDVV 62

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            KEM    DR  +++   P     M   +  H  S +  P   +     FR E RP+ G 
Sbjct: 63  EKEMYTFLDRAGRSLTLRPELTASMVRCYLEHGMSKKVQPVKLWSAGPMFRYE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIG 203
            R R+F   D  +               F  YL  F+ LGL ++ +   S       P  
Sbjct: 121 -RYRQFWQLDVEALGSEAPEVDLEIIA-FAIYL--FNALGLSNLEVVINSVGCPVCRPGY 176

Query: 204 GDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
            D         F  L +T + +   +   +         +                    
Sbjct: 177 RDALKRYVGSNFDALCNTCQNRFERNPLRILDCKNERCREIMKDAPGIVDYLCVECSEHF 236

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKGADGKDHY 311
                   +     +  +   RG++              G       +A   G  G+   
Sbjct: 237 KRVKEGMTILGINYKEDKNLVRGLDYYTKTAFEVLSGELG-----AQNAVCGG--GRYDN 289

Query: 312 VQMGSYGIGA-MRVVAAVIES---SHDGKGIIWPDSVAPFKISL-INIKAHDQVCRDACE 366
           +     G        AA IE    + +G+G  +       +  + + I   D + ++   
Sbjct: 290 LAETIGGPHVPGVGFAAGIERIVLTMEGQGCDFGQ-----QPGIDVFIVTADDLAKNKAL 344

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L +    V  D  G+ IGSQ   A      L  I+G   +    V +K    G +
Sbjct: 345 KLLYDLRREQISVDMDYTGKSIGSQLKTASNKEAKLACILGGVEIEKGVVTVKDLRKGSQ 404

Query: 427 EDMSLEEVINYASHRFS 443
            +++ +  I+Y     +
Sbjct: 405 SEVANDSFIDYVKANLA 421


>gi|149195568|ref|ZP_01872625.1| glycyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149141030|gb|EDM29426.1| glycyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 485

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 120/365 (32%), Gaps = 75/365 (20%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
            +    +KA +   T + +  + F++   S R  LPF   Q    FR+E+ PR    RSR
Sbjct: 179 PVFSEENKAYLRAETCQPIFVN-FQTICNSTRQKLPFGIAQTGKAFRNEINPRNFTFRSR 237

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF   +   F  + +     YN      L  +  + LK  P                   
Sbjct: 238 EFNQMEMEFFCHSDDSMD-WYNFWRDQRLAFYSDV-LKFKP------------------- 276

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               E+      D +     +      +       +E            H E        
Sbjct: 277 ----ESMRTHDHDKLAHYAKAAMDIEFEFPFGWGELEGIHHRGTWDLSQHAEFSGQKQEY 332

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
             +                           G + K     + +  +G  R++ A++  ++
Sbjct: 333 FDQ---------------------------GRNEKYIPTVVET-SVGLDRLMLALLCEAY 364

Query: 334 DGKG---------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           D                  + +P  +AP +++++ +        +   +++A+L      
Sbjct: 365 DEDEAETAKDGKEVEGRVVMRFPAIIAPVQVAILPLSKK---LGEGARELHAKLKPF-FR 420

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+  + IG ++   D +G P  +      + D+ V ++ R T  +E ++++++ NY 
Sbjct: 421 SEYDE-AQSIGKRYRRQDEIGTPFCLTFDFDSLEDNCVTVRERDTMSQERVAIDQLANYL 479

Query: 439 SHRFS 443
             +  
Sbjct: 480 MDKIR 484


>gi|115305794|sp|Q7UEU9|SYG_RHOBA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
          Length = 536

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 123/369 (33%), Gaps = 46/369 (12%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +         +      P   + +   F++ + S R  +PF   Q+   FR+E+ PR 
Sbjct: 193 MFKTTLGALGGEEDTTFLRPETAQGIFVNFKNVVDSSRVRIPFGIGQVGKSFRNEITPRN 252

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F   P  S+  Y       +  + +LGL +  +      I  +  
Sbjct: 253 FTFRSREFEQMEIEFFCH-PNQSQEWYRYWRDRRMAWYTKLGLSNESL------IMREHH 305

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G   +  +  F+      E          +           AT+ +  E  
Sbjct: 306 TEELAHYSVGTADIEYAFPFLPEGEYGELEGIAHRGDFDLRSHMEGKLDPATNPMTVELN 365

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               P+++               G+   L           +     +     GA R   A
Sbjct: 366 EHGKPKHR---------------GSGKDLAYR---DDITNEKFVPHVIEPSAGADRAALA 407

Query: 328 VIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  ++                 +     +AP K ++  +   D    +  ++IY  L +
Sbjct: 408 FLCEAYTEDEAPDENGKMQTRTVMKLDPRLAPIKAAVFPLVKKD-GMPEVAQEIYGALKE 466

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +VF+D  G  +G ++   D  G P  + V    ++D  V I+ R T  +  + +++V
Sbjct: 467 H-YNVFYDAKGA-VGRRYRRQDEAGTPYCITVDGDSLTDKTVTIRDRDTLEQTRVKIDDV 524

Query: 435 INYASHRFS 443
           ++    R  
Sbjct: 525 VSEIQSRMK 533



 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 22/100 (22%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP------ 72
           L  R G + Q S      +G + + PLG +   N+      +   +G  E+  P      
Sbjct: 7   LCKRRGFLFQSSEIYGGVQGFWDYGPLGVELKRNLKDAWWHDM-ISGHNELVSPAGAPST 65

Query: 73  ---------TLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
                     +    +W  SG YD +   M+   +   + 
Sbjct: 66  FEMVGLDCTIIMHPQVWKCSGHYDLFHDHMVDCRESKKRY 105


>gi|325686499|gb|EGD28527.1| histidine--tRNA ligase [Streptococcus sanguinis SK72]
          Length = 426

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 139/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKPSLSADSQRRLEENPLRVLDSKEAEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAD---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   V   +V +K+     
Sbjct: 345 LELVQALRTQGFAAERDYLDRKLKAQFKSADIFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|327471768|gb|EGF17209.1| histidine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 426

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 139/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFKKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDAESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
               T      +      +  ++          I        G++ ++     + G    
Sbjct: 235 TYFATVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAS---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD       + +G   V   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADNFKAKTLITLGESEVESGRVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|295398027|ref|ZP_06808083.1| histidine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294973785|gb|EFG49556.1| histidine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 430

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 146/443 (32%), Gaps = 62/443 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  KG    LP        +    R   N+    E+  P  +S +L+  S     D 
Sbjct: 1   MIQR-PKGTADILPEDMNLWHFIEETARRILNQYRYFEIRTPMFESYELFSRSVGETTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ ++ +   P     +   +         +  P+  Y +   FR E RP+
Sbjct: 60  VSKEMYDFYDKGNRHIALKPEGTAPIVRAYVENKLYAPEQVKPYKVYYMGPMFRYE-RPQ 118

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F                  + +F  L ++ I +   S       
Sbjct: 119 SG--RLRQFHQIGVEVFGEANAAKDVET---IALAMDLFKSLNIQHIKLVINSLGDTSSR 173

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS E          +V  SKD  D  I +      D +S  S 
Sbjct: 174 LAYRQALIDYLTPFTEELSEESKTRLHKNPLRVLDSKDKKDIEIVANAPSILDYLSEEST 233

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-------FGTKYSLPMSAT 301
                   +  + +  E   D          +      IF        FG + ++     
Sbjct: 234 KRFNEVQ-SLLTALGIEFEIDPNMVRGLDYYQ----DTIFEIMSEDKVFGAQTTICGGGN 288

Query: 302 FKG-----ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + G     +DGK+     G +G+G  R++  ++  + + +     +      + ++NI  
Sbjct: 289 YDGLVQEISDGKESAPGFG-FGLGIERLI--LLMKAQEVQVPDMHE----LDVYVVNIGD 341

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMG---EQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                 +A  K+   +   G      D      +   QF  A+ LG  L V +G   + +
Sbjct: 342 G---TDEAAMKVLQYVRHAGFSA---DRNFFGAKPKKQFRDANKLGADLVVTIGESELEN 395

Query: 414 SKVEIKHRLTGIREDMSLEEVIN 436
           +++ +KH  +G      LE+  +
Sbjct: 396 NQITVKHMTSGKEAAYPLEKFAD 418


>gi|24380240|ref|NP_722195.1| seryl-tRNA synthetase [Streptococcus mutans UA159]
 gi|30173154|sp|Q8DSB7|SYS_STRMU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|24378250|gb|AAN59501.1|AE015015_1 putative seryl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 426

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   LAD +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADND 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S +   KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPEDSYNELEKMTANAENILQKLELPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|167044235|gb|ABZ08916.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_APKG5H11]
          Length = 429

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 14/207 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y+ L  G K    + A + +   N  G  E+SVP +   ++   SG    +   +    
Sbjct: 163 FYTMLGYGPKLERALIAWMLDLHSNEHGYTEVSVPAVVKREIMEGSGNLPKFADNLY--- 219

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             ++  +   PT E  +T+++R  I     LP  +      FR E     R   G+ R  
Sbjct: 220 HDDEDDLWLIPTAEVPITNLYRDEIIPANTLPLKYVAQTPCFRREKASAGRDTRGIKRVH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   + Y F + PE S      +      +  +LG     ++  +G +G   S  + + 
Sbjct: 280 QFNKVEMYQF-VEPETSNQELENLVDDAEDVCRKLGFTYRVLQLCTGDMGFASSKTYDI- 337

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFD 240
               E      +++++    S  TDF 
Sbjct: 338 ----EVWAAGCEEWLEVSSCSNCTDFQ 360


>gi|329314241|gb|AEB88654.1| Glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
          Length = 463

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 133/365 (36%), Gaps = 74/365 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L ++           ++S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASDWLTNL-----------NMS 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++    +                 +   I  ++   +     + +   
Sbjct: 257 SENMRLRDHDEDELSHYSN-----------------ATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLRK-------------HAEHSGEDFR------YHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++D +G          + +  ++AP+K +++ +            KI+ +LS   
Sbjct: 341 AFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSG---EAIKIFEQLSSK- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  V      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEA 455

Query: 437 YASHR 441
           + + +
Sbjct: 456 FLTEK 460


>gi|325958379|ref|YP_004289845.1| ATP phosphoribosyltransferase regulatory subunit [Methanobacterium
           sp. AL-21]
 gi|325329811|gb|ADZ08873.1| ATP phosphoribosyltransferase regulatory subunit [Methanobacterium
           sp. AL-21]
          Length = 429

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 140/435 (32%), Gaps = 42/435 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKE 92
           Q  +G   +L    K   NV   ++      G  E+  P  +   L+  +SG  +    +
Sbjct: 4   QRPRGTRDFLFEEMKERKNVENTMKRIFESYGYGEIKTPIFEELSLFTTKSG--EGIKDQ 61

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +    D++ + +   P     +  ++   ++     P   Y     FR E RP+ G  R 
Sbjct: 62  IYHFQDKSGRDLALRPELTAPVARMYIKELQK-APKPVKMYYFGSCFRYE-RPQAG--RF 117

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR----------AESGPI 202
           R+F             GS+     M          LGL++  +                I
Sbjct: 118 RQFWQLGCELIGGKSPGSEAEVISMAA---HCLDELGLENYEIHIGNLGILRNILIDAQI 174

Query: 203 GGDLSHEFIVLADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNS--------IVEQ 251
            GD   + +   D G   E +        D           D+    S        I   
Sbjct: 175 LGDTQDQVMAAIDKGDAEELKNLLKSINTDEDSEELLLKLIDMKGDASILKDAEALINCS 234

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---KYSLPMSATFKGADGK 308
             A  A        +  ++   +      GI  G  +Y GT    Y   + A  + + G 
Sbjct: 235 ENACNALFELEKLLEALEAFGFSNYTVNLGIARGLDYYTGTVFEIYVHGLGAQKQISGGG 294

Query: 309 DHYVQMGSYGIGAMRVVAAV----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +     G        A     +  +   +        A  K+ +  + +   +    
Sbjct: 295 TYNLIELFGGEKVESTGFAFGFDRVMEALKKQQTTIDKEEA-VKVFVAPLNSDLSLT--- 350

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I  +L K       D +G+++    + AD       V++GS+   + KV +K   TG
Sbjct: 351 GYEIVQKLRKANIGAEVDLVGKKLKKILSYADTKQISYVVLLGSREFEEGKVTVKDMNTG 410

Query: 425 IREDMSLEEVINYAS 439
            +E +++ EV +Y  
Sbjct: 411 EQESVNISEVESYFK 425


>gi|257456234|ref|ZP_05621431.1| glycyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257446320|gb|EEV21366.1| glycyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 450

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 70/489 (14%), Positives = 141/489 (28%), Gaps = 123/489 (25%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + PLG +  +N+     +E  +     + +    L  
Sbjct: 14  LCKRRGFVFQSSEIYGGQNGAWDYGPLGIELKNNIARAWWKEMTQLHNSIVGIDAAILMH 73

Query: 77  ADLWVESGRYDSYGK-----------------------------------------EMLR 95
             +W  SG  +++                                            M +
Sbjct: 74  PRVWEASGHVENFTDPLVDCKKCKARFRADQIDPEKLAKKECPDCGGELTDVRKFNLMFK 133

Query: 96  L----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
                 D N   +   P   + +   +++  +S R  +PF   QI   FR+E+  +  + 
Sbjct: 134 THIGPTDDNSSLIYLRPETAQGIYVNYKNVAQSNRMKIPFGIAQIGKAFRNEIVTKNFIF 193

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+ EF   +   F + P      +N     Y R                     +    F
Sbjct: 194 RTCEFEQMEMQFF-VKPGTDDEWFN-----YWR---------------------EQRWAF 226

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                    ++   +   D                  I  ++   +     VHN   FD 
Sbjct: 227 YKKHGVRMDKLRWHRHGPDELA-------HYAKDAYDIEYEFPMGFKELEGVHNRTNFDL 279

Query: 271 LPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                                T++S   M    +    + +   +     G  R +   +
Sbjct: 280 TRH------------------TEFSGKDMQYIDQDNGNERYIPYIIETSAGLTRNLLMFL 321

Query: 330 ESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             S++ +              + +   +AP  ++++ +   D +  +  + I A L +  
Sbjct: 322 CDSYEEQKVADKGNDDDWRTVLHFHPVIAPITVAVLPLMKKDGLA-ELAQDIQAELRE-D 379

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +D  G  IG ++   D  G P  + V      D  V ++ R +  +  +   E+ N
Sbjct: 380 FRTDYDQAGA-IGKRYRRQDEAGTPFCITVDYDSKEDGTVTLRFRDSMDQVRVPRAELAN 438

Query: 437 YASHRFSNN 445
                  N 
Sbjct: 439 RIRTEIKNY 447


>gi|268609347|ref|ZP_06143074.1| histidyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 446

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 135/418 (32%), Gaps = 48/418 (11%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +  I RE     G  E+  PT ++ DL++ S     D   KEM  +    
Sbjct: 15  LPKDVYKWHTIEKIARETAESFGFGELRFPTFENTDLFLRSVGETTDVVQKEMYTVKA-K 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +      P            +      LP   Y I   FR E RP+ G  R REF     
Sbjct: 74  ETEFTLRPEGTACAIRAMLQNGLLNEALPQRIYYIISCFRHE-RPQAG--RLREFHQFGI 130

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHE--------- 209
                    +      + +    +  RLGLK+I +   S   P      HE         
Sbjct: 131 EMAGSAAPTADAE---VILLAKTLLERLGLKNIELLINSIGCPNCRAKYHEALKAYFEPH 187

Query: 210 FIVLADT-GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              L DT  E  V      +D   P       D   +   + +  + +      +     
Sbjct: 188 IDELCDTCKERLVKNPMRLLDCKSPICKEIGKDAPVITDYLCEDCSDHFTKLQKYLTGFG 247

Query: 269 DSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--DGKDHYVQMGS-----YGI 319
                + R   RG++     +F F T           G   DG    +   S     +G+
Sbjct: 248 IEYKVDPR-IVRGLDYYTKTVFEFVTTEIGAQGTVCGGGRYDGLIEQLSGQSTPALGFGM 306

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++  +     D +G    D + P K  +       +   +   ++   L ++G   
Sbjct: 307 GIERLLLVM-----DKQGC---DYLTPKKCDIYFATMG-EAALEKAMQLTKDLRELGYCA 357

Query: 380 FWDD--MGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +D    G +   ++A            V++G   +   KV++K    G   +++L++
Sbjct: 358 EYDLMGRGIKPQMKYAN----KINAAFTVVIGDNELESGKVKLKEMSKGEETEVALDD 411


>gi|120403575|ref|YP_953404.1| histidyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|166228587|sp|A1T898|SYH_MYCVP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119956393|gb|ABM13398.1| histidyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 422

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 131/420 (31%), Gaps = 43/420 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            +  KG+  +LP        V   +     R G  ++ +P  +   L+        D   
Sbjct: 7   FKAPKGVPDYLPPASAEFVAVRNGLLAAARRAGYGDIELPIFEDTALFARGVGESTDVVS 66

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 67  KEMYTFADRGDRSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLCYSGPFFRYE-RPQAG-- 123

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 124 RYRQLQQVGVEAIGVDDPALDAEVIAVADA---GFRSLGLDGFRLDITSLGDDSCRPQYR 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     ++      +  +     ++ +   ++    +  A       
Sbjct: 181 ELLQEFLFKLDLDEETRRRAEINPLRVLDDKRPHMKEMTADAPVMLDHLSDAAKQHFDTV 240

Query: 265 EKLFDS---LPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG---ADGKDHY 311
               D+            RG++      F       G +  +     + G     G    
Sbjct: 241 LAHLDALSVPYVINPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMHQLGGRDL 300

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             +G +G+G  R + A+  E    G         A   +  + +   D   R A   + A
Sbjct: 301 SGIG-FGLGVDRTLLALRAEGKTAG-------ETARVDVYAVPL-GGDAKVRLAV--LAA 349

Query: 371 RLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +L   G  V     D   + G+    AD  G  + ++ G + +    V +K   TG + D
Sbjct: 350 QLRAAGVRVDVAYGDRSLK-GAM-KGADRSGASIALVAGDRDLEAGTVGMKSMATGEQVD 407


>gi|50365084|ref|YP_053509.1| glycyl-tRNA synthetase [Mesoplasma florum L1]
 gi|59798529|sp|Q6F1J8|SYG_MESFL RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|50363640|gb|AAT75625.1| glycyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 451

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/416 (14%), Positives = 134/416 (32%), Gaps = 92/416 (22%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRN 100
           G    + +   IRE+              ++   L             M +      +  
Sbjct: 109 GVMTENQMEEFIREQNIKCPKCQACDFTQIRKFAL-------------MFKTNQGVLEDE 155

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             ++   P   + +   F++  +S  + LPF   QI   FR+E+ P   + R+REF   +
Sbjct: 156 SSSVYLRPETAQGIFINFKNAQRSLRKKLPFGIGQIGKSFRNEITPGNFIFRTREFEQME 215

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                 L  F                   + S E          
Sbjct: 216 ----------------------LEFF------------------FNPSDE---------- 225

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                KD+  + +    T   D I +N    +  +        ++    D   +      
Sbjct: 226 -----KDWFSYWLNEVETFLQDKIQINKENYRVRSHEKDELAHYSTATSDIEFKFPFGWG 280

Query: 280 RGIEVGHIFYFGTK---YSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               V H   F       +     T+      +     +    +G  R++ A++  ++  
Sbjct: 281 ELWGVAHRGNFDLNAHQEASKQDLTYLDPTTNQKVLPHVIEPSVGVERMMLAILWQAYHE 340

Query: 336 KGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + +           P ++AP++I+++ ++       D  + +Y+ L     DV +D+ G 
Sbjct: 341 EDLGEGNSRIVMKLPYNLAPYQIAVMPLQKQ---QNDQAQALYSNLLN-NFDVTYDETGN 396

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G ++   D +G P  + V       + V ++ R +  +  ++L+E+  Y   +F
Sbjct: 397 -VGKRYRRQDAIGTPFVITVDFDTPETNSVTVRERDSMEQVRINLDELEAYLKAKF 451


>gi|169824587|ref|YP_001692198.1| glycyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|167831392|dbj|BAG08308.1| glycyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 465

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 120/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + N   +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 157 MFKTFQGVTEDNKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 216

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F       +      +  Y R F +  L ++ +R           
Sbjct: 217 FIFRTREFEQMELEFFCKPGTDLE------WFDYWRNFCKEFLLNLGIR----------- 259

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  +        S++ + F   +              +             H+E  
Sbjct: 260 -------EENLRLRDHSQEELSFYSKATTDFEYLFPFGWGELWGIADRTDYDLSKHSEGS 312

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            + L      +                             + +        +G  R+  +
Sbjct: 313 GEKLEYMDPTT----------------------------NEKYIPYCIEPSVGVDRMFLS 344

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            +  ++D + +             ++A +K++++ +        D   +IY  L+K    
Sbjct: 345 FLCDAYDEEQLEDNTTRTVLKIHPALAAYKVAVLPLTKK---LNDKAMEIYNELAK-NFM 400

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D  G P  V +    + D+ V I+ R +  ++ M++EE+I + 
Sbjct: 401 THFDDAG-SIGKRYRREDEAGTPYCVTIDFDTLEDNTVTIRDRDSMEQKRMTVEEIIEFV 459

Query: 439 SHRFS 443
           +    
Sbjct: 460 NKEME 464


>gi|226311476|ref|YP_002771370.1| histidyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094424|dbj|BAH42866.1| histidyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 424

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 151/444 (34%), Gaps = 63/444 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    +P   +    V A  R+   R+   E+  P  +S +L+        D   K
Sbjct: 5   QIPRGTQDIMPGTVELWHYVEAKARDLCRRSNYAEIRTPLFESTELFQRGVGETTDIVEK 64

Query: 92  EMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPR 146
           EM  +A+ R+  A+   P   E    + RS++++        P   Y +   FR E RP+
Sbjct: 65  EMYSVANPRSTDALTLRP---EGTAGVVRSYVENKLYGVPNQPTKLYYLGPMFRHE-RPQ 120

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGD 205
            G  R R+F+   A +   +          +    +R++  LGL  + +   S G +   
Sbjct: 121 AG--RYRQFVQFGAEAIGSSDPAIDAE---VIGLAIRLYQELGLTGLSVELNSVGTVEDR 175

Query: 206 LSHEFIVLA-----------------DTGETQVFCSKD-------FMDFPIPSENTDFDD 241
             H   +LA                 D    +V   K+            I    ++   
Sbjct: 176 ARHREHLLAHLNGVRSELCEDCQSRIDRNPLRVLDCKNETCKRLTMDAPSILDYLSEESA 235

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF--GTKYSLPMS 299
                              +    +  D             E+G +     G +Y+  + 
Sbjct: 236 AHFEAVQNYLTALDIPFHVNPRLVRGLDYYTLTAFEIKMA-EIGAVETLCGGGRYN-GLV 293

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS--VAPFKISLINIKAH 357
           A   G D     +    + +   R++ A+     + +G+  P S  +  F +        
Sbjct: 294 AELGGDD-----MPGIGFALSIERLLLAL-----EKQGVQLPISGGIDCFVVVQTP---- 339

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +     +  +L + G     D +  ++ +Q   AD L      I+G   +++  V 
Sbjct: 340 --EAKTTAFVLVDQLRQAGIAAELDYLDRKMKAQLKQADRLQARFTAIIGESELTNGTVV 397

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           +K   TG ++++  EE++   + +
Sbjct: 398 LKEMATGEQQEVKREELVAVLAAK 421


>gi|213024072|ref|ZP_03338519.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 60

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60


>gi|229918418|ref|YP_002887064.1| histidyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|259511948|sp|C4L534|SYH_EXISA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229469847|gb|ACQ71619.1| histidyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 427

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 131/439 (29%), Gaps = 51/439 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           +  +G    LP   +    V   +R+   R    E+  P  ++ +L+  S     D   K
Sbjct: 3   KAPRGTQDLLPGTVETWQYVEEKLRDMSARYNYKEIRTPIFETTNLFTRSVGETTDIVQK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM  L  +        P     +   F  + +    + P   Y +   FR E RP+ G  
Sbjct: 63  EMFTLVKKGKDEYTLRPEGTASVVRAFVTNKLFGNPDQPTKLYYMGPMFRYE-RPQKG-- 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM------RAESG---- 200
           R R+       +   +          +      I+   GL+ I +       AES     
Sbjct: 120 RFRQLHQYGVEAIGSSDPAVDAE---VISLAYSIYKSFGLQKIKVVVNSLGDAESRNAHR 176

Query: 201 --------PIGGDLSHEFIVLADTGETQVFCSKDFMDFP-------IPSENTDFDDIISL 245
                   P+ G+L  +          ++   K   D P       I     +       
Sbjct: 177 DALIRHFEPVAGELCQDCQSRLYKNPLRILDCKVDRDHPSMKTAPSILEYLNEESKAYFE 236

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLPMSATF 302
             + +      A   D    +  D             E  G I     G +Y    +   
Sbjct: 237 QVLAQLDALGVAYEVDPTLVRGLDYYTHTAFEIMSEAEGFGAITTLCGGGRY----NGLV 292

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           +   G D       +GIG  R++ A+          + P+      + ++     ++   
Sbjct: 293 QDIGGPDMPGI--GFGIGLERLILAL------ENEGVLPELETGLDVFIV--AQGEKEVE 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   L   G     D  G +   QF  AD L     VI+G   V      +K   
Sbjct: 343 LTATRLLQLLRMEGFKADRDYQGRKFKGQFKQADRLKAKFTVILGDDEVERGAAALKDMT 402

Query: 423 TGIREDMSLEEVINYASHR 441
           TG + D+ L  V +     
Sbjct: 403 TGEQVDVPLSAVADKIREL 421


>gi|227529956|ref|ZP_03960005.1| histidine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350141|gb|EEJ40432.1| histidine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 425

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 135/438 (30%), Gaps = 52/438 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +Q  KG    LP      + V  + RE  ++ G   +  P  +  +++        D 
Sbjct: 1   MEYQKPKGTADLLPGTTNLWEKVEKVAREVFDQFGYRGIRTPMFEDYNVFSRNVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +       P     Y +   FR E RP+
Sbjct: 61  VEKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF      + +            M    +++F R G+ +  ++     +G   
Sbjct: 120 SG--RQREFHQIGVEALNNESPQIDVEVIAM---AMQLFKRFGVPN--VKLTINTLGDKQ 172

Query: 207 SHEFIVLADTG-----ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             E    A          ++        +  P    D  D      + +  +       D
Sbjct: 173 VREDYREALINFLKPHYDELSSDSQERMYRNPLRVLDSKDAGDQKIVAQAPSIL--DYLD 230

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATF-------- 302
             ++  FD +    +      E+      G  Y           S      +        
Sbjct: 231 EESQNYFDQVQSLLKELGIDYEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGR 290

Query: 303 ----KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   G      +G +G+G  R++  + + +            AP     +   + +
Sbjct: 291 YNGLINQLGGPEEGGIG-FGMGVERLMLLLQQEN---------PEFAPQDQLDVFFASAN 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +   KI  ++   G     D  G ++G Q   A         + G + V + + ++
Sbjct: 341 EAGDNLAFKILNQIRDKGVVADKDYSGVKVGKQIKEAFRRNAKYFAVFGEREVDEGQFQL 400

Query: 419 KHRLTGIREDMSLEEVIN 436
           K+  T    D+ + + + 
Sbjct: 401 KNAATKDTVDVKIADFVA 418


>gi|330718278|ref|ZP_08312878.1| histidyl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 433

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 92/442 (20%), Positives = 149/442 (33%), Gaps = 67/442 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I Q  KG    LP   +   +V  I R      G  E+  P  ++ D++  S     D  
Sbjct: 5   IFQRPKGTADLLPQQTEQWQHVEGIARLLFGDYGFKEIRTPHFENFDVFSRSAGDTSDVV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            KEM    D+ D+ M   P     +   +          + P+  + I   FR E RP+ 
Sbjct: 65  TKEMYDFYDKGDRHMALRPEGTAGIVRAYVENKLYGPEFDKPYKAFYIGPMFRYE-RPQA 123

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------- 199
           G  R R+F    A +F             M V +   F  LGLK++ +   +        
Sbjct: 124 G--RFRQFHQIGAEAFGAVSPALDVEIIAMAVDF---FKTLGLKNLKVAINTLGDKTSRD 178

Query: 200 ----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                      P   +LSH+     +    +V  SKD  D    ++     D ++  S  
Sbjct: 179 AYRQALIDYLKPHFDELSHDSQERLEKNPLRVLDSKDPKDQIFVADAPSILDYLTPESQN 238

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGT-KYSLPMSATFKG-- 304
                              D   E      RG++     IF   T   SL  SAT  G  
Sbjct: 239 HWQRVQELL-------TALDLDFEVDTSMVRGLDYYNDTIFEIMTADESLKGSATIAGGG 291

Query: 305 -------ADGKDHYVQMGSYGIGAMRVVAAVIESSH-----DGKGIIWPDSVAPFKISLI 352
                    G      +G +GIG  R++  ++E+ H     D                ++
Sbjct: 292 RYSGLVEQFGGPETPGVG-FGIGVERLIG-LLEAQHVTFKNDND----------LDFYVV 339

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           NI            +I   +   G     D +     +QF  AD       V +G + ++
Sbjct: 340 NIGDDTDTI---ATQIVQAIRSYGYMAERDYLARSPKAQFKSADRGHAKFVVTIGEQELA 396

Query: 413 DSKVEIKHRLTGIREDMSLEEV 434
           +   ++K+ LTG + D+ L ++
Sbjct: 397 NHSAKLKNMLTGQQLDVKLADL 418


>gi|225181104|ref|ZP_03734551.1| histidyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225168301|gb|EEG77105.1| histidyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 416

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 139/438 (31%), Gaps = 57/438 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP   K    +     E  +R G  E+  P  +  +L++       D   K
Sbjct: 2   QAPRGTNDILPDEIKTWRQLEHKAVEICHRFGYEEIRTPIFEHTELFLRGVGDVTDIVSK 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR+++++   P     +   +          P   + I   FR +   R G  R
Sbjct: 62  EMYTFKDRSERSLTLRPEGTAPVARAYMESNLKGIPQPVKLFYIGPMFRYD---RPGAGR 118

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEF 210
            R+F       F             + V  L  F  LGL    +   S  +G  D   E+
Sbjct: 119 YRQFYQFGVEVFGTNAPAIDAE---VIVLALDFFRSLGLSDFALHLNS--VGCPDCRQEY 173

Query: 211 IVLADTGETQVF------CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                     +       CS+ F   P+   +   D        +        +    H 
Sbjct: 174 RSALQNELKDIVSTLCSDCSERFDKNPMRILDCKIDKCKEATKNLPSILDYLCSDCSAHF 233

Query: 265 EK------LFDSLPENKRVSARGIE------------VGHIFYF---GTKYSLPMSATFK 303
           E+                   RG++            VG        G +Y   + +T  
Sbjct: 234 EQVKLLLNKLGEEYVINPRLVRGLDYYTKTAFEIISTVGDTEQAIGGGGRY-DNLVSTIG 292

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIES-SHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D          + +G  RV+ A+ ES ++  KG      VA                 
Sbjct: 293 GPD-----TPGIGFAVGIERVLLAIKESDAYPIKGPTLDVFVA-----------KAGNVP 336

Query: 363 DA-CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           D     I   L   G  V  D MG+ + +QF  A+       V++G + +   +V +++ 
Sbjct: 337 DYEVMPIIMDLRNAGFSVDMDYMGKSLKAQFKTANKKDARYVVVLGEEEMQSKEVTLRNM 396

Query: 422 LTGIREDMSLEEVINYAS 439
            TG +E + L+++     
Sbjct: 397 TTGSQETVGLKQLAERLE 414


>gi|227513282|ref|ZP_03943331.1| histidyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
 gi|227083483|gb|EEI18795.1| histidyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
          Length = 430

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 144/444 (32%), Gaps = 46/444 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP   +    V    R   N     E+  P  ++ D++   SG   D 
Sbjct: 1   MRYQRPKGTADILPEEARKWTYVEETARMLFNDYRYQEIRTPMFENFDVFSRTSGDTSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F            P   + +   FR E RP+
Sbjct: 61  VTKEMYDFKDKGDRHISLRPEGTAGVVRAFVENKLYGPEHQRPVKVFYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF      +F             M    + + H  GLK I +   S       
Sbjct: 120 SG--RQREFHQIGVEAFGSDEPELDVEVIAMG---MDLLHHFGLKDIRLEINSLGDAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS +  V       +V  SKD  D  I  +     D ++ +S 
Sbjct: 175 AAYRQALIDYLDPHFDELSKDSQVRLHKNPLRVLDSKDKQDQEIVKDAPSILDYLNDDSK 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFY-FGTKYS-LPMSATFKG 304
                        +H   + D          +    E+       G  Y+ +     + G
Sbjct: 235 KHFERVKK-LLDTLHIPYVIDPDMVRGLDYYTHTIFEIMVDSKALGEGYTTICAGGRYNG 293

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G      +G +G+G  R++  ++  +   K  +        ++    +   +Q  
Sbjct: 294 LVEQLGGPEMPGIG-FGLGMERLM--LLMDAQGVKFPVLD------QLDAYVVGIGEQTS 344

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   KI   L   G     D +  +  +QF  AD L     + +G   +      +K  
Sbjct: 345 IE-TLKIVQALRANGFAADRDYLNRKPKAQFKSADKLNAQYTITIGESELESHTANVKSM 403

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +G   ++ ++++IN      ++N
Sbjct: 404 ASGKEINVPIDKIINDFDEIITSN 427


>gi|220903295|ref|YP_002478607.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867594|gb|ACL47929.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 416

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 126/426 (29%), Gaps = 43/426 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG     P        +    R+   R G +E+  P ++  +L+  S     D   KEM 
Sbjct: 7   KGFADMFPPDSDIFTRMENTARDIFGRYGFVELRTPIVEFTELFQRSIGEETDVVQKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR D+++   P     +   +     + R      +     FR E RP+ G  R R+
Sbjct: 67  TFPDRKDRSLTLRPEATAGVMRAYIESGLANREAVSRLFTTGPMFRYE-RPQKG--RMRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F   +          +      M    LR    LGL+ + ++  S       P   D   
Sbjct: 124 FHQINCECLGSHSPYADADLISML---LRFLDALGLEDLTLKVNSLGCSQCRPKFKDALL 180

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            ++   D+      C++     P+   +       ++     +           H + + 
Sbjct: 181 AYLETVDSAALCADCARRVHTNPLRVLDCKQPGCRAITDAAPKLLDYNCPECRAHFDTVL 240

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRV-- 324
             L   K       E+ H    G  Y               +      G Y      +  
Sbjct: 241 GLLNGEKLP----FELDHRLVRGLDYYCRTTFEVVSGSIGAQAAVAGGGRYDGLIRSLGG 296

Query: 325 -------VAAVIESSH--DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
                   AA +E      G G     +  P    L+ + A  +    A   +   L   
Sbjct: 297 PDAPGVGFAAGMERLALMMGAG-----AAVPADFYLVGMDAQSRAQGYA---LAQNLRAA 348

Query: 376 GCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G     +      G +     A   G    +I+G    + + V +K+  +G +  +   +
Sbjct: 349 GLRGEMNFSE--AGFKSLMRQAGKSGARYCLIMGPDEAAQNTVVVKNLESGEQTTVPQAQ 406

Query: 434 VINYAS 439
            ++   
Sbjct: 407 ALHILQ 412


>gi|83815951|ref|YP_444974.1| histidyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757345|gb|ABC45458.1| histidyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 435

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 132/421 (31%), Gaps = 53/421 (12%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             +V A +R+   R    E+  P L+  +L         D   KEM    +R+D   +  
Sbjct: 33  WRHVEATVRDVMRRHNFEEIRTPVLEPTELVARGVGESTDIVQKEMFAF-ERSDTQYVLR 91

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H    R      + I   FR E  P+ G  R R+F            
Sbjct: 92  PEITAPVVRSFLQHHLDQRGGVQKLFYIGPCFRAEQ-PQKG--RYRQFHQFGIEVLGADQ 148

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
             +      + ++   +   LGL  + +R  +                   P   +LS  
Sbjct: 149 PRADAETIAVLMA---VCEALGLSDLRLRLNTLGTPERREEYVAALQDYLAPHADELSET 205

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +    ++  +K   +  +  +     D +S  S+                   +D
Sbjct: 206 SRRRLEQNPLRILDTKVEHEQALLRDAPTLIDFVSDESLAHY---DEVKRLLGDLGVEYD 262

Query: 270 SLPENKRVSAR----GIEVGHIFYFGTKYSLPMS------ATFKGADGKDHYVQMGSYGI 319
             P   R          E+ H    G + +L         A   G+D         + G+
Sbjct: 263 EDPHLVRGLDYYTETTFELEHPG-LGAQSALAGGGRYDRLAEVLGSD-DPVPAVGFAAGM 320

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R+  A+  +  D  G   PD         + I A        C +    L   G  V
Sbjct: 321 --ERLFLALDAAEADRPGADTPD---------VFIAALGDEAEAWCFRTAQELRAGGLHV 369

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D MG  + +Q   A+    P  +I+G   +      +K   +G +ED+  ++++ Y +
Sbjct: 370 AHDLMGRSLKAQMKEANRQNAPYAMIIGGNELEAGAATVKEMESGEQEDVPFDDLVEYLT 429

Query: 440 H 440
            
Sbjct: 430 S 430


>gi|326692515|ref|ZP_08229520.1| histidyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 434

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 145/437 (33%), Gaps = 59/437 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG    LP        V  + R         E+  P  ++ +++  S     D   
Sbjct: 6   FQRPKGTADLLPEQTAQWQYVENLARVLFGDYNFKEVRTPLFENFEVFSRSAGDTSDVVT 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           KEM    D+ D+ +   P     +   F          + P+  + I   FR E RP+ G
Sbjct: 66  KEMYDFHDKGDRHVALRPEGTAGIVRAFVENKLYGPEFDKPYKAFYIGPMFRYE-RPQAG 124

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------- 199
             R R+F    A +F  +          M +     F  LGL ++ +   S         
Sbjct: 125 --RFRQFHQIGAEAFGSSSPALDVEIIAMLI---NFFQTLGLDNLKVAINSLGDKATRDA 179

Query: 200 ---------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                     P   +LS +     +    +V  SKD  D    ++     D +S +    
Sbjct: 180 YRQALIDYLKPHFDELSADSQARLEKNPLRVLDSKDPRDQVFVADAPVILDYLS-DEAKA 238

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARG--IEVGHIFYF---------GTKYSLPMS 299
            W    A  + +      D               E+  +            G +YS    
Sbjct: 239 HWEKVQALLTALDIPFEVDPTMVRGLDYYNDTIFEIMTVDDTLKGAATIAGGGRYS---- 294

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP--FKISLINIKAH 357
                  G      +G +GIG  R+V+ +     + KG+     + P      ++NI   
Sbjct: 295 -GLVSEFGGPETPGVG-FGIGVERLVSLL-----EAKGL---KPIEPEGLDFYVVNIGDD 344

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +V   A  +I   +   G     D +G    +QF  AD       V +G + ++D   +
Sbjct: 345 TEV---AAMQIVQAIRGFGYVAERDYLGRSAKAQFKSADRYQSKYVVTIGEQELADHVAK 401

Query: 418 IKHRLTGIREDMSLEEV 434
           IK+  TG ++ + L ++
Sbjct: 402 IKNMATGQQQTVKLADL 418


>gi|240171984|ref|ZP_04750643.1| histidyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 420

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 137/435 (31%), Gaps = 43/435 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  + P        V   +     R G   + +P  +   L+        D   
Sbjct: 4   FSAPKGVPDYYPPDSAQFVAVRDGLLSAARRAGYGYIELPIFEDTALFARGVGESTDVVS 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 64  KEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLSYAGPFFRYE-RPQAG-- 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL+   +   S       P   
Sbjct: 121 RYRQLQQVGVEAIGVDDPALDAEVIAVADA---GFRALGLEGFRLEITSLGDETCRPQYR 177

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+   D  E     ++      +  +      + +   ++    +  A       
Sbjct: 178 ELLQEFLFGLDLDEETRRRAQLNPLRVLDDKRPAVRAMTADAPVLLDHLSDTAKQHFDTV 237

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     ++AR             E  H    G +  +     + G         
Sbjct: 238 LSHLDALGVPYVINARMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRQLGGQN 296

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    +G+G  R + A+  E  + G+              +  +   +Q        + A
Sbjct: 297 LSGIGFGLGVDRTLLALRAEGKNVGETTR---------CDVFGVPLSEQAKLKLAV-LAA 346

Query: 371 RLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +L   G  V     D G + G+    AD  G  + ++VG + +  + V +K   TG +  
Sbjct: 347 QLRASGVRVDLAYGDRGLK-GAM-RAADRSGARIALVVGDRDIEAAMVGVKDLATGDQVS 404

Query: 429 MSLEEVINYASHRFS 443
           ++L+ V+     R +
Sbjct: 405 VALDSVVAEVVSRLA 419


>gi|159901209|ref|YP_001547456.1| glycyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894248|gb|ABX07328.1| glycyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 459

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 156/482 (32%), Gaps = 99/482 (20%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I   S      +G Y + PLG +  +N+ A         R     +    L  
Sbjct: 12  LCKRRGFIFPGSDIYGGLQGTYDYGPLGIELKNNLKAAWWRAMVYERDDVEGLDASILTH 71

Query: 77  ADLWVESGR-----------------Y--DSYGKE------------------MLRLAD- 98
             +   SG                  +  D                       M + A  
Sbjct: 72  RLVLRHSGHEATFTDPMVDCRNCKSRWRADQLKDNKCEKCGSTDLTEPRPFNLMFKTAVG 131

Query: 99  ---RNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                       P   + +   F++ + +  R LPF   QI   FR+E+ PR  + R RE
Sbjct: 132 PIAEEGSFAYLRPETAQGIFTNFKNVVDATSRRLPFGIAQIGKAFRNEITPRNFIFRVRE 191

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F + P      +++   + L+ +   GL S  ++A     G +L+H      
Sbjct: 192 FEQMELEFF-VQPGTDDEWHSQWVEARLQWWRDQGLLSENLQAYHQA-GDELAHYAKATV 249

Query: 215 DT------GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           D       G  ++    +  DF + S      D+     +        A  +  H E   
Sbjct: 250 DILYQFPHGLEELEGIANRTDFDLGSHTRGQADLGLSAKVDPN-EDSTAKLTIPHPETQK 308

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             +P     SA G++ G +      ++          +G             + R+V   
Sbjct: 309 PLVPFVIEPSA-GVDRGVLAILTEAFTKE-----TLENG-------------SERIV--- 346

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQ 387
                    +     +AP K++++ +  +     +  + I + L   G   +F++D G  
Sbjct: 347 ---------LKLKPHLAPIKVAVLPLARNKPEIVEKAKAIKSLLMATGIGRIFYEDTGN- 396

Query: 388 IGSQFAVADLLGFPLQVIV-----GSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASH 440
           IG  +   D +G P  V V     G    +     V ++ R T  +  + + E+ +Y   
Sbjct: 397 IGKGYRRHDEVGTPFCVTVDFDTLGRGDDASLLDTVTVRDRDTMSQVRIHINELASYIRE 456

Query: 441 RF 442
           R 
Sbjct: 457 RL 458


>gi|227524426|ref|ZP_03954475.1| histidyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
 gi|227088385|gb|EEI23697.1| histidyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
          Length = 430

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 143/444 (32%), Gaps = 46/444 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP   +    V    R   N     E+  P  ++ D++   SG   D 
Sbjct: 1   MRYQRPKGTADILPEEARKWTYVEETARMLFNDYRYQEIRTPMFENFDVFSRTSGDTSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F            P   + +   FR E RP+
Sbjct: 61  VTKEMYDFKDKGDRHISLRPEGTAGVVRAFVENKLYGPEHQRPVKVFYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F             M    + + H  GLK I +   S       
Sbjct: 120 SG--RQREFHQIGVEDFGSDEPELDVEVIAMG---MDLLHHFGLKDIRLEINSLGDAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS +  V       +V  SKD  D  I  +     D ++ +S 
Sbjct: 175 AAYRQALIDYLDPHFDELSKDSQVRLHKNPLRVLDSKDKQDQEIVKDAPSILDYLNDDSK 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFY-FGTKYS-LPMSATFKG 304
                        +H   + D          +    E+       G  Y+ +     + G
Sbjct: 235 KHFERVKK-LLDTLHIPYVIDPDMVRGLDYYTHTIFEIMVDSKALGEGYTTICAGGRYNG 293

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G      +G +G+G  R++  ++  +   K  +        ++    +   +Q  
Sbjct: 294 LVEQLGGPEMPGIG-FGLGMERLM--LLMDAQGVKFPVLD------QLDAYVVGIGEQTS 344

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   KI   L   G     D +  +  +QF  AD L     + +G   +      +K  
Sbjct: 345 IE-TLKIVQALRANGFAADRDYLNRKPKAQFKSADKLNAQYTITIGESELESHTANVKSM 403

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +G   ++ ++++IN      ++N
Sbjct: 404 ASGKEINVPIDKIINDFDEIITSN 427


>gi|15924555|ref|NP_372089.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927145|ref|NP_374678.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|21283246|ref|NP_646334.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483813|ref|YP_041037.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486400|ref|YP_043621.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651958|ref|YP_186462.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161756|ref|YP_494220.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195373|ref|YP_500177.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148268049|ref|YP_001246992.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394117|ref|YP_001316792.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221680|ref|YP_001332502.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979883|ref|YP_001442142.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509793|ref|YP_001575452.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140015|ref|ZP_03564508.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253314936|ref|ZP_04838149.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732218|ref|ZP_04866383.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733185|ref|ZP_04867350.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006351|ref|ZP_05144952.2| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425690|ref|ZP_05602114.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428351|ref|ZP_05604749.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430988|ref|ZP_05607368.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433676|ref|ZP_05610034.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436590|ref|ZP_05612634.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257793641|ref|ZP_05642620.1| glycyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258411059|ref|ZP_05681339.1| glycyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258420137|ref|ZP_05683092.1| glycyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258437397|ref|ZP_05689381.1| glycyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443603|ref|ZP_05691942.1| glycyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258446810|ref|ZP_05694964.1| glycyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448724|ref|ZP_05696836.1| glycyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258450606|ref|ZP_05698668.1| glycyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258453541|ref|ZP_05701519.1| glycyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262049140|ref|ZP_06022017.1| glycyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262051164|ref|ZP_06023388.1| glycyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|269203193|ref|YP_003282462.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893066|ref|ZP_06301300.1| glycyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904147|ref|ZP_06312035.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282905974|ref|ZP_06313829.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908884|ref|ZP_06316702.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911203|ref|ZP_06319005.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914372|ref|ZP_06322158.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282916835|ref|ZP_06324593.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282919341|ref|ZP_06327076.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920114|ref|ZP_06327839.1| glycyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924666|ref|ZP_06332334.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282928198|ref|ZP_06335803.1| glycyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283770641|ref|ZP_06343533.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283958329|ref|ZP_06375780.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024624|ref|ZP_06379022.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503446|ref|ZP_06667293.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510463|ref|ZP_06669169.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293531003|ref|ZP_06671685.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848596|ref|ZP_06789342.1| glycyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295406688|ref|ZP_06816493.1| glycyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428143|ref|ZP_06820775.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275813|ref|ZP_06858320.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207716|ref|ZP_06924151.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245730|ref|ZP_06929595.1| glycyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297590891|ref|ZP_06949529.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911797|ref|ZP_07129240.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380846|ref|ZP_07363506.1| glycyl-tRNA synthetase beta subunit [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|54039670|sp|P67035|SYG_STAAW RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|54039676|sp|P99129|SYG_STAAN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|54042030|sp|P67034|SYG_STAAM RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|56749385|sp|Q6G902|SYG_STAAS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|56749414|sp|Q6GGD5|SYG_STAAR RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|71153560|sp|Q5HFJ5|SYG_STAAC RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|123291788|sp|Q2FY08|SYG_STAA8 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|123749609|sp|Q2FGF8|SYG_STAA3 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|166227939|sp|A7X2W2|SYG_STAA1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|172048905|sp|A6QHA8|SYG_STAAE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|189082278|sp|A6U237|SYG_STAA2 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|189082279|sp|A5IT93|SYG_STAA9 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|189082280|sp|A8Z4A4|SYG_STAAT RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|13701363|dbj|BAB42657.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14247336|dbj|BAB57727.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204686|dbj|BAB95382.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241942|emb|CAG40637.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244843|emb|CAG43304.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57286144|gb|AAW38238.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127730|gb|ABD22244.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202931|gb|ABD30741.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|147741118|gb|ABQ49416.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946569|gb|ABR52505.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374480|dbj|BAF67740.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156722018|dbj|BAF78435.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368602|gb|ABX29573.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724007|gb|EES92736.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728725|gb|EES97454.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271384|gb|EEV03530.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275192|gb|EEV06679.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278418|gb|EEV09054.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281769|gb|EEV11906.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283941|gb|EEV14064.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257787613|gb|EEV25953.1| glycyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257840209|gb|EEV64673.1| glycyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257843848|gb|EEV68242.1| glycyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257848602|gb|EEV72590.1| glycyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851009|gb|EEV74952.1| glycyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257854385|gb|EEV77334.1| glycyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858002|gb|EEV80891.1| glycyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257861764|gb|EEV84563.1| glycyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257864272|gb|EEV87022.1| glycyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|259160801|gb|EEW45821.1| glycyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|259162809|gb|EEW47374.1| glycyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262075483|gb|ACY11456.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941055|emb|CBI49439.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282313501|gb|EFB43896.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317151|gb|EFB47525.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282319322|gb|EFB49674.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282321553|gb|EFB51878.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282324898|gb|EFB55208.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327148|gb|EFB57443.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331266|gb|EFB60780.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590005|gb|EFB95087.1| glycyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594462|gb|EFB99447.1| glycyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595765|gb|EFC00729.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764384|gb|EFC04510.1| glycyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283460788|gb|EFC07878.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283470843|emb|CAQ50054.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
 gi|283790478|gb|EFC29295.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817247|gb|ADC37734.1| Glycyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290920271|gb|EFD97337.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095112|gb|EFE25377.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466827|gb|EFF09347.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824622|gb|EFG41045.1| glycyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968435|gb|EFG44459.1| glycyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295128501|gb|EFG58135.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887733|gb|EFH26631.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177381|gb|EFH36633.1| glycyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297575777|gb|EFH94493.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300886043|gb|EFK81245.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333241|gb|ADL23434.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302751396|gb|ADL65573.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340573|gb|EFM06507.1| glycyl-tRNA synthetase beta subunit [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829953|emb|CBX34795.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315129843|gb|EFT85833.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195467|gb|EFU25854.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198740|gb|EFU29068.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140550|gb|EFW32404.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144087|gb|EFW35856.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323440463|gb|EGA98175.1| glycyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323443237|gb|EGB00855.1| glycyl-tRNA synthetase [Staphylococcus aureus O46]
 gi|329727248|gb|EGG63704.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
 gi|329728442|gb|EGG64879.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
 gi|329733064|gb|EGG69401.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 463

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 133/365 (36%), Gaps = 74/365 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L S+           ++S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASDWLTSL-----------NMS 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++    +                 +   I  ++   +     + +   
Sbjct: 257 SENMRLRDHDEDELSHYSN-----------------ATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLRK-------------HAEHSGEDFR------YHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++D +G          + +  ++AP+K +++ +            KI+ +LS   
Sbjct: 341 AFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSG---EAIKIFEQLSSK- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  V      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEA 455

Query: 437 YASHR 441
           + + +
Sbjct: 456 FLTEK 460


>gi|154505898|ref|ZP_02042636.1| hypothetical protein RUMGNA_03440 [Ruminococcus gnavus ATCC 29149]
 gi|153793916|gb|EDN76336.1| hypothetical protein RUMGNA_03440 [Ruminococcus gnavus ATCC 29149]
          Length = 463

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 121/365 (33%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKNVVYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N      L     LGLK                
Sbjct: 215 FTFRTREFEQMELEFF-CEPGTDLEWFNYWKSFCLNWLSSLGLKD--------------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D                  +   +   +     + +   
Sbjct: 259 DEVRYRDHDAEELSFYSKATTD------------------VEFLFPFGWGELWGIADRTD 300

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +D     +                   S      F     + +   +    +GA R+V A
Sbjct: 301 YDLTQHQEV------------------SKQDLTYFDDEKKEKYIPYVIEPSLGADRMVLA 342

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + S++D + +          +  ++AP KI ++ +        +  EK++A LSK   +
Sbjct: 343 FLCSAYDEEELEGGDTRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKVFAELSKT-YN 398

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++  Y 
Sbjct: 399 CEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERVKIEDLKAYF 457

Query: 439 SHRFS 443
             +F 
Sbjct: 458 EKKFE 462


>gi|56412599|ref|YP_149674.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361534|ref|YP_002141170.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81678180|sp|Q5PNI1|SYH_SALPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558731|sp|B5BAY6|SYH_SALPK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56126856|gb|AAV76362.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093010|emb|CAR58443.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 424

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 147/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++   ++  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPVLGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 TGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|227510275|ref|ZP_03940324.1| histidyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189927|gb|EEI69994.1| histidyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 430

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 144/444 (32%), Gaps = 46/444 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP   +    V    R   N     E+  P  ++ D++   SG   D 
Sbjct: 1   MRYQRPKGTADILPEEARKWTYVEETARMLFNDYRYQEIRTPMFENFDVFSRTSGDTSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F            P   + +   FR E RP+
Sbjct: 61  VTKEMYDFKDKGDRHISLRPEGTAGVVRAFVENKLYGPEHQRPVKVFYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF      +F             M    + + H  GLK I +   S       
Sbjct: 120 SG--RQREFHQIGVEAFGSDEPELDVEVIAMG---MDLLHHFGLKDIRLEINSLGDAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS +  V       +V  SKD  D  I  +     D ++ +S 
Sbjct: 175 DAYRQALIDYLDPHFDELSKDSQVRLHKNPLRVLDSKDKQDQEIVKDAPSILDYLNDDSK 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFY-FGTKYS-LPMSATFKG 304
                        +H   + D          +    E+       G  Y+ +     + G
Sbjct: 235 KHFERVKK-LLDTLHIPYVIDPDMVRGLDYYTHTIFEIMVDSKALGEGYTTICAGGRYNG 293

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G      +G +G+G  R++  ++  +   K  +        ++    +   +Q  
Sbjct: 294 LVEQLGGPEMPGIG-FGLGMERLM--LLMDAQGVKFPVLD------QLDAYVVGIGEQTS 344

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   KI   L   G     D +  +  +QF  AD L     + +G   +      +K  
Sbjct: 345 IE-TLKIVQALRANGFAADRDYLNRKPKAQFKSADKLNAQYTITIGESELESHTANVKSM 403

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +G   ++ ++++IN      ++N
Sbjct: 404 ASGKEINVPIDKIINDFDEIITSN 427


>gi|29374751|ref|NP_813903.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227555780|ref|ZP_03985827.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257418758|ref|ZP_05595752.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|46577438|sp|Q839Q8|SYS1_ENTFA RecName: Full=Seryl-tRNA synthetase 1; AltName: Full=Serine--tRNA
           ligase 1; Short=SerRS 1; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 1
 gi|29342209|gb|AAO79975.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227175076|gb|EEI56048.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257160586|gb|EEU90546.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 423

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|327467316|gb|EGF12816.1| histidine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 426

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 139/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKPSLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGAG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD+      + +G   +   +V +K+     
Sbjct: 345 LELVQALRAQGFAAERDYLDRKLKAQFKSADIFRAKTLITLGESELESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EIIVSLDQI 413


>gi|93006674|ref|YP_581111.1| seryl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|122415030|sp|Q1Q9M6|SYS_PSYCK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|92394352|gb|ABE75627.1| seryl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 428

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 20/244 (8%)

Query: 17  DAEIASHKLMLRT-GMIHQHSK----GIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D EI  H  +  T GM+   +     G    +  GQ  +    +   +      + G  E
Sbjct: 133 DFEIKDHTHIGETLGMLDFEAATKLTGSRFNVLKGQLAQMHRALIQFMLNTHTIKYGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDIFRSHIKSY 125
             VP + +++    +G+   +  ++ +L +    +D      PT E  MT++ R      
Sbjct: 193 TYVPYIVNSESLKGTGQLPKFEDDLFKLTNHTNNDDMDFYLIPTAEVPMTNLVRGERLDI 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + LP  F      FR E     R   G++R  +F   +  +   T E S      M    
Sbjct: 253 KELPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKVEMVNI-ATAEQSDELLEAMTGQA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I  +L L    ++  +G +G         E  + +     ++    +  DF      T
Sbjct: 312 EFILQQLNLPYRTVKLCTGDMGFAAQKTYDIEVWLPSQETYREISSCSNCGDFQARRMGT 371

Query: 238 DFDD 241
              D
Sbjct: 372 RVKD 375


>gi|332297427|ref|YP_004439349.1| glycyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332180530|gb|AEE16218.1| glycyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 448

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 59/492 (11%), Positives = 133/492 (27%), Gaps = 129/492 (26%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q S       G + + P+G +   N+     +E  +     + +    L  
Sbjct: 14  LCKRRGFVFQSSEIYGGQAGAWDYGPVGIELKKNIQNAWWKEMTQLHDNIVGLDAAILMH 73

Query: 77  ADLWVESGRYDSYGK----------------------------------------EMLRL 96
             +W  SG   ++                                           ++  
Sbjct: 74  PRVWEASGHVANFSDPLVDCKQCKMRFRADTMDQAALAAKKCPNCGGELTEPRAFNLMFK 133

Query: 97  ADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
                           P   + +   +++ I+S R  +PF   Q+   FR+E+  +  + 
Sbjct: 134 THIGPAEDSASVVYLRPETAQGIYVNYKNIIQSNRMKVPFGIAQVGKAFRNEIVTKNFIF 193

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+ EF                                                     E 
Sbjct: 194 RTCEFEQM--------------------------------------------------EM 203

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                 GE   +            +   F     ++    +W           +    + 
Sbjct: 204 QFFVKPGEDDKWFEYWR------EQRWSFYKKYGIHMEKLRWYHHEKLAHYAKDAYDIEY 257

Query: 271 LPENKRVSARGIEVGHIFYFG--TKYS-LPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                     G+     F     T++S   M    +    + +   +     G  R +  
Sbjct: 258 EFPMGFQELEGVHNRTNFDLTRHTEFSGKDMQYIDQDNGNEKYIPYIIETSAGLTRNLLM 317

Query: 328 VIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  +++ +              + +   +AP  ++++ +   D +  +  ++I A L +
Sbjct: 318 FLCDAYEEQNVAAAGAPEDYRTVLHFHPKIAPVTVAILPLMKKDGLA-ELAQEIRAELQE 376

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                 +D  G  IG ++   D +G P  + V      D  V I+ R +  +  +   E+
Sbjct: 377 EFV-TDYDQSG-TIGKRYRRQDEIGTPFCITVDHDTKEDGTVTIRFRDSMEQIRVPRSEL 434

Query: 435 INYASHRFSNNR 446
           ++       N +
Sbjct: 435 VSRLHQEIKNYK 446


>gi|119716172|ref|YP_923137.1| glycyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|119536833|gb|ABL81450.1| glycyl-tRNA synthetase [Nocardioides sp. JS614]
          Length = 471

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 64/448 (14%), Positives = 139/448 (31%), Gaps = 60/448 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +         + +    +    +W  SG  D++   +    
Sbjct: 36  WDYGPLGVELKENIKRQWWKSMVTMRDDMVGLDSSIILPRQVWEASGHVDTFMDPLTECQ 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD------ELRPRFGVMR 151
             + +        EEV     +S   S          +            E R   G+++
Sbjct: 96  SCHKRFRA-DHLQEEVAEKKSKSEGHSVNPDDVDLATVACPNCGTRGAWTEPRQFSGLLK 154

Query: 152 SR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSH 208
           +    +  +     L PE ++  +           H+   G+           IG    +
Sbjct: 155 THLGVIENEEGLHYLRPETAQGIFINFANVVTSSRHKPPFGIAQ---------IGKSFRN 205

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E         T+ F   +   F  P E+ ++                    +  H E   
Sbjct: 206 EITPGNFIFRTREFEQMEMEFFVKPGEDKEWHQYWIDERTRWYVDLGIDPDNLRHFEH-- 263

Query: 269 DSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------G 307
               +    S R +++ + F F              T + L   +   G D         
Sbjct: 264 -PQEKLSHYSTRTVDIEYRFRFAGSEWGELEGIANRTDFDLSTHSKHSGQDLSYFDQANN 322

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINI 354
           + +   +     G  R +   +  ++                 +     +AP K++++ +
Sbjct: 323 ERYVPYVIEPAAGLSRSLMTFLVDAYQEDEAPNTKGGVDKRTVLRLDPRLAPVKVAVLPL 382

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            + +       + +   L + G  V +DD G  IG ++   D +G P  V V  + + D 
Sbjct: 383 -SRNADLSPKAKDLAMELRRAGWHVDFDDSGA-IGRRYRRQDEIGTPYCVTVDFETLDDQ 440

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V ++ R +  +E + L+ +  Y + R 
Sbjct: 441 AVTVRERDSMQQERIGLDRISAYFAERL 468


>gi|306836221|ref|ZP_07469205.1| histidine--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567942|gb|EFM43523.1| histidine--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 429

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 137/431 (31%), Gaps = 38/431 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  + P        V   + E+ + +G   + +P  +   L+        D   KE
Sbjct: 14  APKGVPDYYPPESATFYKVRQTMVEQAHLSGFQHIELPIFEDTALFARGVGESTDVVSKE 73

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR ++++   P     +      H      +P         FR E RP+ G  R 
Sbjct: 74  MYTFADRGERSVTLRPEGTAGVMRSVIQHNLDRGQMPVKLNYSGPFFRYE-RPQAG--RY 130

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R +  LGL    +   S       P   + 
Sbjct: 131 RQLQQVGVEAIGVDDPALDAE---VIALADRSYRALGLSGFRLELTSLGDRNCRPAYREK 187

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+   D  E     ++      +  +  +  + ++   ++  +              
Sbjct: 188 LQEFLFKLDLDEETRRRAEINPLRVLDDKRPEMQEQLADAPLMLDYLNAECREHFETVTG 247

Query: 267 LFDSLP---ENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
           + D +    E      RG++              G +  +     + G  A      +  
Sbjct: 248 MLDDMGVAYEINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSG 307

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             YG+G  R + A+     + +GI    S +   +  I +       +     I   L K
Sbjct: 308 IGYGLGVDRAILAL-----ETEGITLEGSDSRVDVYGIALGT---AAKRRMTGIINDLRK 359

Query: 375 VGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G   D+ + D G + G+    AD  G    +++G + + +  V +K      + D+ L 
Sbjct: 360 AGIAADMSFGDRGLK-GAM-KGADRAGARFALVLGDQELENGTVAVKDLAAHEQRDVELS 417

Query: 433 EVINYASHRFS 443
           +++        
Sbjct: 418 QLVALLGRDLE 428


>gi|332358852|gb|EGJ36674.1| histidine--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 426

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 136/429 (31%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   S       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKDIGITNVSLELNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKPSLSADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                             +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLEILQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P   A   + +  +           
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIETA-LDVYVAVLGPG---ANGRA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  ++ +QF  AD       + +G   V   +V +K+     
Sbjct: 345 LELVQALRTQGFAAERDYLDRKLKAQFKSADSFKAKTLITLGESEVESGQVTVKNNHNRE 404

Query: 426 REDMSLEEV 434
              +SL+++
Sbjct: 405 EITVSLDQI 413


>gi|82751168|ref|YP_416909.1| glycyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123768505|sp|Q2YT14|SYG_STAAB RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|82656699|emb|CAI81126.1| glycyl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 463

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 133/365 (36%), Gaps = 74/365 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L S+           ++S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASDWLTSL-----------NMS 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++    +                 +   I  ++   +     + +   
Sbjct: 257 SENMRLRDHDEDELSHYSN-----------------ATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLRK-------------HAEHSGEDFR------YHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++D +G          + +  ++AP+K +++ +            KI+ +LS   
Sbjct: 341 AFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSG---EAIKIFEQLSSK- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  V      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEA 455

Query: 437 YASHR 441
           + + +
Sbjct: 456 FLTEK 460


>gi|297588571|ref|ZP_06947214.1| glycine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573944|gb|EFH92665.1| glycine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 469

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 118/356 (33%), Gaps = 53/356 (14%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + N   +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 161 MFKTFQGVTEDNKSEIYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 220

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F       +      +  Y R F R  L ++ M+ E+  +     
Sbjct: 221 FIFRTREFEQMELEFFCEPGTDLE------WFEYWRNFCREFLLNLGMKEENLRLRDHEQ 274

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    +         +     FP            +   + +           +     
Sbjct: 275 EELSFYS------KATTDFEYLFPFGWGELWGIADRTDYDLSKHSEGSGEKLEYMDPSTN 328

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +P     S  G++   + +    Y                                 
Sbjct: 329 EKYIPYCIEPS-VGVDRMFLSFLCDAYEEEQ----------------------------- 358

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +E +     +    ++A +K++++ +        D   +IY  L+K      +DD G  
Sbjct: 359 -LEDNSTRTVLKIHPALAAYKVAVLPLTKK---LNDKAMEIYNELAK-NFMTHFDDAG-S 412

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++   D  G P  V +    + D+ V I+ R T  ++ M++EE+I + +    
Sbjct: 413 IGKRYRREDEAGTPYCVTIDFDTLEDNTVTIRDRDTMEQKRMTVEEIIEFVNKEME 468


>gi|260438844|ref|ZP_05792660.1| glycine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292808683|gb|EFF67888.1| glycine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 462

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 124/364 (34%), Gaps = 71/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +       +     LG+K   MRA       D S
Sbjct: 214 FTFRTREFEQMELEFF-CKPGTDLEWFRYWRGFCINWLKTLGIKDEEMRA------RDHS 266

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G T +     F       E     D    +    Q T+             
Sbjct: 267 PEELCFYSKGTTDIEFLFPFGW----GELWGIADRTDYDLTQHQNTS------------- 309

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                  G   S      F   D   +   +    +GA RV  A
Sbjct: 310 -----------------------GQDMS-----YFDDEDNSKYIPYVVEPSLGADRVTLA 341

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + S++D + +          +  ++AP KI ++ +        +  EKIYA LSK   +
Sbjct: 342 FLCSAYDEEELEGGDVRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKIYADLSKK-YN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V       +D  V ++ R T  +E + +E++  Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSETDGCVTVRDRDTMAQERIKIEDLNKYF 456

Query: 439 SHRF 442
             +F
Sbjct: 457 EDKF 460


>gi|225017181|ref|ZP_03706373.1| hypothetical protein CLOSTMETH_01107 [Clostridium methylpentosum
           DSM 5476]
 gi|224950100|gb|EEG31309.1| hypothetical protein CLOSTMETH_01107 [Clostridium methylpentosum
           DSM 5476]
          Length = 482

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 116/365 (31%), Gaps = 73/365 (20%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D  ++  +   T + +  +       + + LPF   Q+   FR+E+ P  
Sbjct: 174 MFKTFQGVTEDAKNEIYLRPETAQGIFVNFANIQRTTRKKLPFGVAQVGKSFRNEITPGN 233

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      ++    +       LG+K   +R           
Sbjct: 234 FTFRTREFEQMELEFFCA-PGTDLEWFHYWKDACKNWLLSLGIKEENIRLRD-------- 284

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                                    P E + + +  +    V  +               
Sbjct: 285 -----------------------HDPEELSHYSNATTDIEFVFPFGWGELWGIADRTNFD 321

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                 +   S                       +      +HY   +    +GA RV  
Sbjct: 322 LTQHQNHSGKS---------------------LEYFDQQKNEHYVPYVIEPSLGADRVAL 360

Query: 327 AVIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + I             ++APFK  ++ +        +   ++Y +L+K   
Sbjct: 361 AFLCEAYDEEEIAEGDTRVVMHLHPALAPFKACVLPLSKK---LNEQAGEVYEQLAKH-F 416

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V +DD G  IG ++   D +G P+ +    + V D  V ++ R T  +E + ++E++ Y
Sbjct: 417 MVDYDDTG-SIGKRYRRQDEIGTPVCITYDFESVEDGCVTVRDRDTMQQERIRIDELVGY 475

Query: 438 ASHRF 442
                
Sbjct: 476 IEKML 480


>gi|315174090|gb|EFU18107.1| seryl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 423

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|312952534|ref|ZP_07771401.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310629532|gb|EFQ12815.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315153454|gb|EFT97470.1| seryl-tRNA synthetase [Enterococcus faecalis TX0031]
          Length = 423

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 13/218 (5%)

Query: 42  WLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
           +  LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +
Sbjct: 166 YKDLGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD 225

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
              +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 226 ---LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E S     KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 283 KVEMVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWI 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            A     ++    +  DF        + D         
Sbjct: 342 PAQKTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|16761437|ref|NP_457054.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140866|ref|NP_804208.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213028525|ref|ZP_03342972.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213161949|ref|ZP_03347659.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425332|ref|ZP_03358082.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649664|ref|ZP_03379717.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213861387|ref|ZP_03385857.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289825427|ref|ZP_06544664.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|29427529|sp|Q8Z4P4|SYH_SALTI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|25293366|pir||AI0821 histidine-tRNA ligase (EC 6.1.1.21) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503737|emb|CAD02725.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136491|gb|AAO68057.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 424

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 147/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++   ++  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPVLGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|295398161|ref|ZP_06808210.1| serine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294973680|gb|EFG49458.1| serine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 435

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 10/214 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    V   + ++    G  E+  P L + +    +G++  + +++    +  D+ +
Sbjct: 169 LGARLERAVYNFMLDQHQEEGYEEIIPPYLVNENAMYGTGQFPKFTEDVFSTTNE-DRHL 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ F + I    NLP  F  +   FR E     R   G++R  +F   + 
Sbjct: 228 TLIPTAEVPLTNYFANEIIPGENLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFQKVEM 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S     KM  +   I  +L L    M   +G +G   +     E  V A  
Sbjct: 288 VKF-ARPEDSYDELEKMVANAENILQKLNLPYRVMTLSTGDMGFSAAKTYDLEVWVPAQE 346

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              ++    +   F        F +       V 
Sbjct: 347 TYREISSCSNTEAFQARRALIRFRNANGKPEYVH 380


>gi|328476615|gb|EGF47114.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 111

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++      T+ G DG++H   M   G +G M    A +   + G    W   +AP
Sbjct: 1   FMLPDRF----GLTYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW---LAP 53

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +  +I +   ++   +  EK+ A L+K G  V  DD  E++G +   + 
Sbjct: 54  VQAEIIPVN--NEAHGEYAEKVRAELAKRGFRVEVDDRNEKMGYKIRESQ 101


>gi|308189914|ref|YP_003922845.1| glycine--tRNA ligase [Mycoplasma fermentans JER]
 gi|307624656|gb|ADN68961.1| glycine--tRNA ligase [Mycoplasma fermentans JER]
          Length = 446

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 115/344 (33%), Gaps = 68/344 (19%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +     +   P   + +   F++  +S R  LP    Q+   FR+E+ P   + R+RE
Sbjct: 157 VTEETKNKIYLRPETAQGIFVNFKNVQRSMRSKLPMGIGQVGKSFRNEVTPGNFIFRTRE 216

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F           NK++            K    +AE       LS E + + 
Sbjct: 217 FEQMELEVFCHP-----KEANKLY------------KYYIKKAEKFAEYLGLSKENVRIR 259

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +                   E + +    S    +  +            +   ++  + 
Sbjct: 260 E---------------HEKEELSHYSSGTSDIEYLFPFGWGELLGIANRTDYDLNAHMKA 304

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                                   +  +      +     +    IG  R++ A++  S+
Sbjct: 305 TGE---------------------NLEYVDPVTNEKFVPFVIEPSIGLDRLMLAILIDSY 343

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           D + +             ++AP++++++ +        D   ++Y +L K G  V +D+ 
Sbjct: 344 DEEKLEKDDSRVVLHLHKNLAPYQVAVLPLVKK---LNDKATEVYEKLLKAGLSVTYDET 400

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           G  IG ++   D +G P  V +    +  + V I+ R +  +++
Sbjct: 401 G-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDRDSMKQKN 443


>gi|229547035|ref|ZP_04435760.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256855074|ref|ZP_05560435.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|307291565|ref|ZP_07571441.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|229307963|gb|EEN73950.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256709587|gb|EEU24634.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|306497326|gb|EFM66867.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315028722|gb|EFT40654.1| seryl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 423

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|225377160|ref|ZP_03754381.1| hypothetical protein ROSEINA2194_02806 [Roseburia inulinivorans DSM
           16841]
 gi|225211065|gb|EEG93419.1| hypothetical protein ROSEINA2194_02806 [Roseburia inulinivorans DSM
           16841]
          Length = 465

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 125/368 (33%), Gaps = 74/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +             LG+K   MR        D S
Sbjct: 214 FTFRTREFEQMELEFF-CEPGTDLEWFQYWRGFCRDWLQTLGIKEDEMRL------RDHS 266

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G T +       +F  P    +   I              +     +    
Sbjct: 267 PEELSFYSKGTTDI-------EFLFPFGWGELWGIADRTDYDLTRHQNVSGQDLTY---- 315

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                             F    G+ +   +    +GA RVV A
Sbjct: 316 ----------------------------------FDDEKGERYIPYVIEPSLGADRVVLA 341

Query: 328 VIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            + +++D + I             +  ++AP KI ++ +        +  EK+YA+L+K 
Sbjct: 342 FLCAAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKVYAQLAKK 398

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +  +DD G  IG ++   D +G P  V    +  +D  V ++ R T  +E + +E++ 
Sbjct: 399 -YNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFESETDGAVTVRDRDTMEQERIKIEDLD 456

Query: 436 NYASHRFS 443
            Y + +F 
Sbjct: 457 AYFAKKFE 464


>gi|167756851|ref|ZP_02428978.1| hypothetical protein CLORAM_02400 [Clostridium ramosum DSM 1402]
 gi|167703026|gb|EDS17605.1| hypothetical protein CLORAM_02400 [Clostridium ramosum DSM 1402]
          Length = 425

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 144/443 (32%), Gaps = 49/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+++  +G    LP        +  +IR         E+  P  +  +L+  +     D 
Sbjct: 1   MMYKAPRGTVDILPEKSAKWQTLEQLIRTICANYNVKEVRTPIFEHTELFTRAVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM   AD+  +++   P     +   +  + + S  +     Y I   FR E RP+ 
Sbjct: 61  VSKEMYTFADKKGRSITLRPEGTAGVARAYVENKMFSNPDKISKLYYIGPMFRYE-RPQN 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F                     M V+ +     LGL+ + +   +  +G   S
Sbjct: 120 G--RQRQFHQFGVEMIGYESPYLDVECMTMAVTLV---EALGLQGVKLHINT--LGDGDS 172

Query: 208 HEFIVLADTG-----ETQVFCSKDFMDFPIP----SENTDFDDIISLNSIVEQWTAPYAA 258
            +    A           +           P        D +     N+         AA
Sbjct: 173 RDAYREALKAHFAPYLDDLCQDCKNRYEANPLRILDCKVDHNHPAMANAPKTVDYLSEAA 232

Query: 259 TSDVHNEK----LFDSLPENKRVSARGIE--VGHIF-------YFGTKYSLPMSATFKG- 304
            +            +          RG++     +F         G   ++     + G 
Sbjct: 233 KAHFTKVCELLDDLEIEYVVDTNLVRGLDYYCHTVFEVISDDPRLGAGATVGGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G +  G  R++ A+ E   + +G+          + ++ +       R
Sbjct: 293 VQELGGPEAPGVG-FAFGMERLLIAMDEELEEPEGL---------DVYVMPMG---DEAR 339

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I A L   G  V  D  G  + +QF   D L     +I+G + ++D  V IK   
Sbjct: 340 DLAVQITAMLRANGFSVDMDYQGRSLKAQFKTVDRLNSHFAMIIGDQEIADEVVNIKCTH 399

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +  ++ + +E ++ Y  +    +
Sbjct: 400 SKTQDIVPIENIVAYIENHMEGH 422


>gi|73662500|ref|YP_301281.1| glycyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123747875|sp|Q49Y08|SYG_STAS1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|72495015|dbj|BAE18336.1| glycyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 463

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 128/368 (34%), Gaps = 76/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++      + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRTMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    LK +           +LS
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASQWLKDL-----------NLS 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E   L D    ++    +                 +   I  ++   +     + +   
Sbjct: 257 EEATRLRDHDADELSHYSN-----------------ATTDIEYRFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   + G+ +        +GA RV  
Sbjct: 300 FDLKK-------------HSEHSGEDF------QYHDQETGEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++D +G          + +  ++AP+K +++ +            K++  LS   
Sbjct: 341 AFLCDAYDEEGVEGSKDSRTVLHFHPALAPYKAAVLPLSKKLSGD---AIKVFEELSA-- 395

Query: 377 CDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   D D  + IG ++   D +G P  +      + D KV ++ R T  +  M + E+ 
Sbjct: 396 -DFAIDFDESQSIGKRYRRQDEIGTPYCITFDFDSLEDEKVTVRDRDTMEQVRMPITELK 454

Query: 436 NYASHRFS 443
           ++ + +  
Sbjct: 455 SFLAEKVK 462


>gi|237734561|ref|ZP_04565042.1| histidyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|229382381|gb|EEO32472.1| histidyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 425

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 143/443 (32%), Gaps = 49/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+++  +G    LP        +  +IR         E+  P  +  +L+  +     D 
Sbjct: 1   MMYKAPRGTVDILPEKSAKWQTLEQLIRTICANYNVKEVRTPIFEHTELFTRAVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM   AD+  +++   P     +   +  + + S  +     Y I   FR E RP+ 
Sbjct: 61  VSKEMYTFADKKGRSITLRPEGTAGVARAYVENKMFSNPDKISKLYYIGPMFRYE-RPQN 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F                     M V+ +     LGL+ + +   +  +G   S
Sbjct: 120 G--RQRQFHQFGVEMIGYESPYLDVECMTMAVTLV---EALGLQGVKLHINT--LGDGDS 172

Query: 208 HEFIVLADTG-----ETQVFCSKDFMDFPIP----SENTDFDDIISLNSIVEQWTAPYAA 258
            +    A           +           P        D +     N          AA
Sbjct: 173 RDAYREALKAHFAPYLDDLCQDCKNRYEANPLRILDCKVDHNHPAMANVPKTVDYLSEAA 232

Query: 259 TSDVHNEK----LFDSLPENKRVSARGIE--VGHIF-------YFGTKYSLPMSATFKG- 304
            +            +          RG++     +F         G   ++     + G 
Sbjct: 233 KAHFTKVCELLDDLEIEYVVDTNLVRGLDYYCHTVFEVISDDPRLGAGATVGGGGRYNGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G +  G  R++ A+ E   + +G+          + ++ +       R
Sbjct: 293 VQELGGPEAPGVG-FAFGMERLLIAMDEELEEPEGL---------DVYVMPMG---DEAR 339

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I A L   G  V  D  G  + +QF   D L     +I+G + ++D  V IK   
Sbjct: 340 DLAVQITAMLRANGFSVDMDYQGRSLKAQFKTVDRLNSHFAMIIGDQEIADEVVNIKCTH 399

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +  ++ + +E ++ Y  +    +
Sbjct: 400 SKTQDIVPIENIVAYIENHMEGH 422


>gi|229550614|ref|ZP_04439339.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255971641|ref|ZP_05422227.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255974606|ref|ZP_05425192.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256956923|ref|ZP_05561094.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256960726|ref|ZP_05564897.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|257078596|ref|ZP_05572957.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|257081438|ref|ZP_05575799.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257421433|ref|ZP_05598423.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|293384900|ref|ZP_06630738.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388590|ref|ZP_06633091.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294781552|ref|ZP_06746890.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|307269018|ref|ZP_07550381.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307278221|ref|ZP_07559302.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312901191|ref|ZP_07760476.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312908712|ref|ZP_07767652.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312979173|ref|ZP_07790879.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|229304333|gb|EEN70329.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255962659|gb|EET95135.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255967478|gb|EET98100.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256947419|gb|EEU64051.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256951222|gb|EEU67854.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256986626|gb|EEU73928.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256989468|gb|EEU76770.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257163257|gb|EEU93217.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|291077818|gb|EFE15182.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082048|gb|EFE19011.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294451409|gb|EFG19873.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|306505096|gb|EFM74285.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306514687|gb|EFM83239.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310625311|gb|EFQ08594.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311288045|gb|EFQ66601.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311291710|gb|EFQ70266.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315031222|gb|EFT43154.1| seryl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036450|gb|EFT48382.1| seryl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315147058|gb|EFT91074.1| seryl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315156336|gb|EFU00353.1| seryl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315158469|gb|EFU02486.1| seryl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315168211|gb|EFU12228.1| seryl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|323479332|gb|ADX78771.1| seryl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327533948|gb|AEA92782.1| serine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329577577|gb|EGG59011.1| serine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 423

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|322392494|ref|ZP_08065954.1| histidine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144486|gb|EFX39887.1| histidine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 426

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 142/444 (31%), Gaps = 57/444 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKAIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKAAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYA-------ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSA 300
                              D +  +  D            IE   +    G +Y   + A
Sbjct: 235 AHFDAVRQMLENLGVDYIIDSNMVRGLDYYNHTIFEFITEIEGNELTVCAGGRY-DGLVA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G +          +G+G  R++  +     + +G++ P   A   + +  +    + 
Sbjct: 294 YFGGPE-----TAGFGFGLGVERLLLVL-----EKQGVVLPIENA-LDVYIAVLG---EG 339

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +K+
Sbjct: 340 ANIKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVTVKN 399

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             T     +SLE +I   S  F  
Sbjct: 400 NQTREEVQVSLEAIIQDFSEVFEK 423


>gi|284929416|ref|YP_003421938.1| histidyl-tRNA synthetase [cyanobacterium UCYN-A]
 gi|284809860|gb|ADB95557.1| histidyl-tRNA synthetase [cyanobacterium UCYN-A]
          Length = 432

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 130/435 (29%), Gaps = 38/435 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
            G    LP        V A   +   R    E+  P  ++  L+    G   D   KEM 
Sbjct: 8   PGTRDILPEEIGYWQYVEATAAKILGRAMYREIRSPIFENTSLFERGIGEATDVVSKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR+D+ +   P     +   +  +           +     FR E RP+ G  R R+
Sbjct: 68  TFPDRSDRLVTLRPEGTAGVARAYLQNNLHSLGGVQRLWYSGPMFRYE-RPQAG--RQRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F              +      +      +   LGLK + +   S  IG          A
Sbjct: 125 FHQIGLELIGARDPRADVE---VIALATDVLKFLGLKQLKLNINS--IGDKNDRNLYREA 179

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDD-------IISLNSIVEQWTAPYAATSDVHNEKL 267
                  +      D  I S+N    +              + +            ++K 
Sbjct: 180 LIN----YFLSHKEDLDIDSQNRLLKNPLRILDSKNEKTKEINKNAPNILHFLGKESQKH 235

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSATFKGADGKDHYVQMGSYG 318
           FD + +         ++      G  Y         S  +        G  +   +   G
Sbjct: 236 FDEVQQLLTDLNINYQINPCLVRGLDYYTHTAFEIQSDNLGTQSTVCGGGRYDHLIEELG 295

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSV--APFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +   V   I      + I+    +  +P     + I +  +        +  +L    
Sbjct: 296 GTSTPAVGWAIGV---ERLIMLLKQIECSPQHNPDVYIVSKGKKAEAIGLYLAQKLRSEE 352

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  D  G   G QF  AD     + +++G +   ++ +++K   T  +  M+  +++N
Sbjct: 353 LIVELDMSGSNFGKQFKRADRSKASVCIVLGEEEAENNTLQVKWLHTKEQNSMTQVDLLN 412

Query: 437 YASH---RFSNNRPV 448
           + +    + +  R V
Sbjct: 413 HITEFKKQINKYREV 427


>gi|325266501|ref|ZP_08133178.1| serine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324981944|gb|EGC17579.1| serine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 467

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 87/252 (34%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D +I  H  L    G+  + +    G    L  G+ A     +   + +    + G  E 
Sbjct: 170 DLDIKDHVDLGAALGLDFEKAAELSGARFSLMKGKIARLHRALAQFMLDTHTQQHGYTEC 229

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + +    + +G+   +G+++  +    D         PT E  +T+  R  I + +
Sbjct: 230 YTPYIVNDSTLLGTGQLPKFGEDLFHVTRGGDETKLTQYLIPTAEVTLTNTVRDTILAEK 289

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 290 DLPLKLTAHSPCFRSEAGSHGKDTRGLIRQHQFDKVEMVQI-VQPEKSYEALEEMVGHAE 348

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 349 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 408

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 409 FKDENGRNRLVH 420


>gi|85859321|ref|YP_461523.1| histidyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85722412|gb|ABC77355.1| histidyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 426

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 130/434 (29%), Gaps = 45/434 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP        V    RE  +R G  E+ +P L+  DL+        D   KEM 
Sbjct: 13  KGFKDILPEETGKWRFVEDAAREIFSRFGFKEIRLPVLEKTDLFKRGIGESTDIVEKEMY 72

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR D+ +   P     +   +  H           + I   FR E RP+ G  R R+
Sbjct: 73  TFLDRGDEYLTLRPEATSSVIRAYLEHALYNAEPVSRLFTIGPMFRRE-RPQRG--RFRQ 129

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F   D     L    +      M    +     +GLK++ +   S       P    +  
Sbjct: 130 FHQIDVELLGLDDPRADAEVILML---MHFLSTVGLKNVSLELNSLGCSSCRPAFRKVIL 186

Query: 209 EFIVLADTGE----TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           EF+   + G      +   S     F   ++        +        +  +     V +
Sbjct: 187 EFLSGKEDGLCDDCKRRLGSNPLRVFDCKAKECQEIIADAPRLSDFICSDCHTHFETVAS 246

Query: 265 E-KLFDSLPENKRVSARGIEVG-------HIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                D   +      RG++            + G++     +A   G  G+   +    
Sbjct: 247 TLTELDIPFKINARMVRGLDYYTKTTFEVTTEHLGSQ-----NAVVGG--GRYDRLVEEL 299

Query: 317 YGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            G              +I           P          + I +  +  +     +  +
Sbjct: 300 GGPDIPGIGFAVGFERLITLLQAENTRFLPQP-------DLFIASLGESAQRLAFLLCNQ 352

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D     + SQ   A+ L     +I+G + + + K E +   TG ++ + L
Sbjct: 353 LRIKGLHVEQDFSARSLKSQMKRANRLNCAYTLILGDRELEEKKAEFRDMKTGAQQTLFL 412

Query: 432 EEVINYASHRFSNN 445
           + +           
Sbjct: 413 DNLEEQILKLIKER 426


>gi|289550664|ref|YP_003471568.1| Glycyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289180196|gb|ADC87441.1| Glycyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 463

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 129/368 (35%), Gaps = 76/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    LK + +           S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASQWLKDLNI-----------S 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++                      +   I  ++   +     + +   
Sbjct: 257 EENMRLRDHDEDELSHYS-----------------NATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLK-------------QHSEHSGEDF------KYHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL-SKV 375
           A +  ++D +G          + +  ++AP+K +++ +            KI+  L SK 
Sbjct: 341 AFLCDAYDQEGVEGSKDARTVLHFHPALAPYKAAVLPLSKKLSG---EAIKIFEDLSSKF 397

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D    D  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+ 
Sbjct: 398 AIDF---DESQSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMDQVRMPIAELE 454

Query: 436 NYASHRFS 443
            + + +  
Sbjct: 455 AFLTEKVK 462


>gi|218133229|ref|ZP_03462033.1| hypothetical protein BACPEC_01093 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992102|gb|EEC58106.1| hypothetical protein BACPEC_01093 [Bacteroides pectinophilus ATCC
           43243]
          Length = 462

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 123/364 (33%), Gaps = 71/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N      +     LG+K   MRA       D S
Sbjct: 214 FTFRTREFEQMELEFF-CKPGTDLEWFNYWRSYCINWLKSLGMKDDEMRA------RDHS 266

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G T +     F       E     D    +    Q  +    +        
Sbjct: 267 PEELCFYSKGTTDIEFLFPFGW----GELWGIADRTDYDLTQHQNVSGEDMSY------- 315

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                             F     + +   +    +GA RV  A
Sbjct: 316 ----------------------------------FDDESKEKYIPYVIEPSLGADRVTLA 341

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + S++D + I          +  ++AP KI ++ +        +  EKIYA LSK   +
Sbjct: 342 FLCSAYDEEEIGEGDVRTVLHFHPALAPVKIGILPLSKK---LNEGAEKIYAELSKK-YN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  +       +D  V ++ R T  +E + +E++  Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSETDGAVTVRDRDTMQQERIKIEDLKAYF 456

Query: 439 SHRF 442
             +F
Sbjct: 457 EDKF 460


>gi|256618437|ref|ZP_05475283.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256761947|ref|ZP_05502527.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|257084092|ref|ZP_05578453.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257088576|ref|ZP_05582937.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300862206|ref|ZP_07108286.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307276339|ref|ZP_07557465.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|312903849|ref|ZP_07763021.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256597964|gb|EEU17140.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256683198|gb|EEU22893.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256992122|gb|EEU79424.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256997388|gb|EEU83908.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|295112414|emb|CBL31051.1| seryl-tRNA synthetase [Enterococcus sp. 7L76]
 gi|300848731|gb|EFK76488.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306507004|gb|EFM76148.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|310632793|gb|EFQ16076.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315143211|gb|EFT87227.1| seryl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315160827|gb|EFU04844.1| seryl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315171391|gb|EFU15408.1| seryl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315577010|gb|EFU89201.1| seryl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 423

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|239904666|ref|YP_002951404.1| histidyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259511945|sp|C4XT36|SYH_DESMR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|239794529|dbj|BAH73518.1| histidyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 421

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 144/434 (33%), Gaps = 54/434 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG     P        +    R+  +R G  E+ VP L+  +L+  S     D   KEM 
Sbjct: 8   KGFADLFPPDSTVFSFIEETARQVFSRYGYKELRVPVLERTELFCRSIGEETDVVQKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR  +++   P     +        ++   L   ++     FR E RP+ G  R R+
Sbjct: 68  TFPDRKGRSLTLRPEATAGVMRALVEDGRASEGL-AKYFAYGPMFRYE-RPQKG--RMRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F   D  +              M   YLR    LGLK++ +   S       PI  D   
Sbjct: 124 FHQIDVEAVGSPDALLDAEVLLMLDQYLR---ALGLKNLVIELNSLGCKACRPIFLDTLR 180

Query: 209 EF-------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATS 260
           EF        +  D    ++      +D  +P       D   + + +       +AA  
Sbjct: 181 EFLKGMHKEQLCEDCMRRKLSNPLRVLDCKVPQCKEFTADAPKITDHLCPDCADHFAAVR 240

Query: 261 DVHNEKLFDSLPENKRVSARGIE--VGHIFY-----FGTKYSLPMSATFKGADGKDH--- 310
            V +          +    RG++  V   F       G++ S+     +   DG  H   
Sbjct: 241 RVLDGAGLAYTLNPRL--VRGLDYYVRTTFEIVSGDIGSQSSVAGGGRY---DGLVHSIG 295

Query: 311 -YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQVCRDACEKI 368
                G      M  +A +I+   +          AP F + ++     D +  +    +
Sbjct: 296 GPDVPGVGFACGMERLALLIDKKAEP---------APDFALVVL-----DAIGLERGLLL 341

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L   G         +   SQ   AD  G    +++GS  ++   V +K+   G +E 
Sbjct: 342 AQELRAAGFSGEAPYAAKSAKSQMRAADKSGAAFCLVLGSDELAAGTVVVKNMRAGGQET 401

Query: 429 MSLEEVINYASHRF 442
           +S + +  +   R 
Sbjct: 402 VSQDILPAHLRARL 415


>gi|224159055|ref|XP_002197555.1| PREDICTED: similar to glutamyl-prolyl-tRNA synthetase, partial
           [Taeniopygia guttata]
          Length = 166

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 6/157 (3%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVES 83
           + ++ MI  +   G Y   P      + +      E  + G      P   S A L  E 
Sbjct: 2   ITKSEMIEYYDVSGCYILRPWAHAIWEAIKDFFDAEIKKLGVENCYFPMFVSQAALETEK 61

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                +  E+  +         + +   PT E VM   +   ++S+R+LP    Q     
Sbjct: 62  SHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPSYAKWVQSHRDLPIKLNQWCSVV 121

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           R E +     +R+REFL ++ ++   T E +      
Sbjct: 122 RWEFKHPQPFLRTREFLWQEGHTAFATYEEAAEEVKA 158


>gi|110802627|ref|YP_699210.1| histidyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123146002|sp|Q0SRP7|SYH_CLOPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110683128|gb|ABG86498.1| histidine--tRNA ligase [Clostridium perfringens SM101]
          Length = 415

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 126/430 (29%), Gaps = 36/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R REF       F              +  +    F   GL                +
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFN 177

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATSDV 262
                        +  +        P    D  +      + E      +     +    
Sbjct: 178 EALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFS 237

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY 311
             +   D +   +      I  G  +Y  T + +                 +  DG    
Sbjct: 238 KLKAYLDVMGI-EYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTP 296

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G+  +           D +GI  P+   P +  +      D+   +   K+   
Sbjct: 297 AMGFGLGLERL-------LLILDEEGIEIPE---PVRCEVYIGSMGDRAKLE-AMKLAFN 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D +G+ + +Q   A+ +G     ++G   + ++K++IK    G + ++SL
Sbjct: 346 LRKSGIKAEIDHLGKSVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEVSL 405

Query: 432 E--EVINYAS 439
           +  E++N   
Sbjct: 406 DINEIVNIVK 415


>gi|315658159|ref|ZP_07911031.1| glycyl-tRNA synthetase beta subunit [Staphylococcus lugdunensis
           M23590]
 gi|315496488|gb|EFU84811.1| glycyl-tRNA synthetase beta subunit [Staphylococcus lugdunensis
           M23590]
          Length = 475

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 129/368 (35%), Gaps = 76/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 166 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 225

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    LK + +           S
Sbjct: 226 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASQWLKDLNI-----------S 268

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++                      +   I  ++   +     + +   
Sbjct: 269 EENMRLRDHDEDELSHYS-----------------NATTDIEYKFPFGWGELWGIASRTD 311

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 312 FDLK-------------QHSEHSGEDF------KYHDPETNEKYIPYCIEPSLGADRVTL 352

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL-SKV 375
           A +  ++D +G          + +  ++AP+K +++ +            KI+  L SK 
Sbjct: 353 AFLCDAYDQEGVEGSKDARTVLHFHPALAPYKAAVLPLSKKLSG---EAIKIFEDLSSKF 409

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D    D  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+ 
Sbjct: 410 AIDF---DESQSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMDQVRMPIAELE 466

Query: 436 NYASHRFS 443
            + + +  
Sbjct: 467 AFLTEKVK 474


>gi|312437966|gb|ADQ77037.1| glycyl-tRNA synthetase beta subunit [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 463

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 133/365 (36%), Gaps = 74/365 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L S+           ++S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASDWLTSL-----------NMS 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++    +                 +   I  ++   +     + +   
Sbjct: 257 SENMRLRDHDEDELSHYSN-----------------ATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLRK-------------HGEHSGEDFR------YHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++D +G          + +  ++AP+K +++ +            KI+ +LS   
Sbjct: 341 AFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSG---EAIKIFEQLSSK- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  V      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEA 455

Query: 437 YASHR 441
           + + +
Sbjct: 456 FLTEK 460


>gi|167044442|gb|ABZ09118.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine crenarchaeote HF4000_APKG6D9]
          Length = 485

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 132/366 (36%), Gaps = 42/366 (11%)

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           M ++      ++A +   T + +  D  R +      LP    Q+   FR+E+ PR  ++
Sbjct: 145 MFKVGIGPEEEEAYLRPETCQSIFVDFPRLYKTMRGKLPLGIGQVGKSFRNEIAPRQSLL 204

Query: 151 RSREFLMKDAYSFDLTPE-GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           R REF   +   F    +      ++++  + LRI           + +S P+       
Sbjct: 205 RLREFYQAEIEVFCNPAKLDQVEKFDEIQDTILRI-----------QTDSDPV------- 246

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +   +  E+ V  +K    +      T+F +   ++    ++          + E  FD
Sbjct: 247 AMTCKEAVESGVIPNKLVAYYL--GILTEFYEKTGIDISKSRFRKLGDKEKAFYAEVAFD 304

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA------DGKDHYVQMGSYGIGAMR 323
              E        +   +     + Y L   A           + +     +    +G  R
Sbjct: 305 FEVETTIGWLELVACNYR----SDYDLSSHAKKSKEKFEVMDNDEKVLPHVFEISMGIDR 360

Query: 324 VVAAVIESSHDGKG------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +  ++E S           +     ++P  + ++++   D   ++  ++IY  + +   
Sbjct: 361 SLYTILEHSLKEDKEHERIVLSLKPYLSPTHVGILSLVKKD-GLKEKTDEIYLNIKRK-F 418

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D F D  G  IG ++   D +G P  + V  + + D  + I+ R +  +  + + E+ + 
Sbjct: 419 DAFLDHSGA-IGRRYRRLDEIGAPFAITVDHQTLEDDTITIRKRDSMEQTRIKISELDSI 477

Query: 438 ASHRFS 443
            S   +
Sbjct: 478 LSESVA 483


>gi|118617356|ref|YP_905688.1| histidyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|229558697|sp|A0PPE8|SYH_MYCUA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118569466|gb|ABL04217.1| histidyl-tRNA synthetase HisS [Mycobacterium ulcerans Agy99]
          Length = 420

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 131/431 (30%), Gaps = 41/431 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V   +     R G   + +P  +   L+        D   KE
Sbjct: 6   APKGVPDYVPPDSAQFVAVRDGLLTAARRAGYGHIELPIFEDTALFARGVGESTDVVSKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR D+++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 66  MYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG--RY 122

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +  +    F  LGL    +   S       P   +L
Sbjct: 123 RQLQQVGVEAIGVDDPALDAEVIAIADA---GFRSLGLDGFRLEITSLGDETCRPQYREL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+   D  +     +       +  +  +   + +   ++    +  A         
Sbjct: 180 LQEFLFGLDLDDETRRRAALNPLRVLDDKRPEVRAMTAEAPVLLDHLSDVAKQHFDTVLA 239

Query: 267 LFDS---LPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQM 314
             D+            RG++      F       G +  +     + G         +  
Sbjct: 240 HLDALRVPYVINPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMKQLGGQDLSG 299

Query: 315 GSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +G+G  R + A+  E    G         A   +  + +    ++       +  +L 
Sbjct: 300 IGFGLGVDRTMLALRAEGKSVG-------ESARCDVFGVPLSEQAKLTLAV---LAGQLR 349

Query: 374 KVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G  V     D G + G+    AD  G  + ++ G + +    V +K   TG +  +S 
Sbjct: 350 ASGVRVDLAYGDRGLK-GAM-RAADRSGARVALVTGDRDIEAGTVGVKDLGTGEQVSVST 407

Query: 432 EEVINYASHRF 442
           + V++    + 
Sbjct: 408 DSVVDDVISKL 418


>gi|116629514|ref|YP_814686.1| histidyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|311110843|ref|ZP_07712240.1| histidine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273548|sp|Q043X4|SYH_LACGA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116095096|gb|ABJ60248.1| histidyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|311065997|gb|EFQ46337.1| histidine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 428

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 143/437 (32%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    + + V  I R    R    E+  P+ ++ +++  S     D   K
Sbjct: 4   QRPKGTVDILPAESGSWEKVETIARNFFKRANYREIRTPSFENYEVFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     ++  PF  Y I   FR E RP+ G 
Sbjct: 64  EMYDFNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFNVYYIDNTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSNSPLADVETIMMG---HDLLAELGVKNYELHINTLGNAQVRKDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK   D     +     D +  +S    
Sbjct: 178 HDALVNYFTPLKDQLSEDSQRRLSMNPLRILDSKAEEDKQFLPDAPRIVDYLDEDSKKNF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            T          N  L D            + E         E       G +Y+     
Sbjct: 238 ETITDMLEQLGINYVLDDDLVRGLDYYTGVIFEFMVEDKNLWESATTILGGGRYNH---- 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
             +  DG +       +GIG  R++  + E +    + +GI            + NI   
Sbjct: 294 LVEEFDGPETPAV--GFGIGEERLMLVLKEQNPALFEDEGI---------DFFITNIGEG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            ++      +I   L K      +D   +++  QF  AD +     + +G+K + +  + 
Sbjct: 343 TEM---KAVEIARSLRKQDFKAQYDVDQKKLKQQFRKADRVHAKFVITLGAKELENGVLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SLE++
Sbjct: 400 IKRLADGKTLDLSLEDL 416


>gi|289450135|ref|YP_003475729.1| glycine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184682|gb|ADC91107.1| glycine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 462

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 123/365 (33%), Gaps = 73/365 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + N   +   P   + +   FR+    S + LPF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDNKSELYLRPETAQGIFVNFRNVQRTSRKKLPFGICQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P+     ++            LG+                 
Sbjct: 214 FTFRTREFEQMELEFF-CNPDTDLDWFHYWKDFCYNWLKTLGI----------------- 255

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                     ET++           P E + +    +    +  +               
Sbjct: 256 ---------AETELRLRDHR-----PEELSFYSKATTDIEFLFPFGWGELWGIADRTNYD 301

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
                E  R                        T+   +  + +   +    +GA RV  
Sbjct: 302 LGRHMEASRQ---------------------DLTYFDPETNEKYIPYVVEPSLGADRVAL 340

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A + +++D + +          +  ++AP KI+++ + A      +A   +Y  LSK+G 
Sbjct: 341 AFLCAAYDEETLAGGDIRTVLRFHPALAPVKIAVLPLSAK---LTEAARPLYEMLSKIG- 396

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +   DD  + IG ++   D +G P  V      V+D+ V ++ R +  +  + + E+  Y
Sbjct: 397 NCELDDR-QGIGKRYRRQDEIGTPYCVTYDFDSVNDNCVTVRERDSMEQVRLPIAELTAY 455

Query: 438 ASHRF 442
            + +F
Sbjct: 456 FADKF 460


>gi|193214675|ref|YP_001995874.1| glycyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|193088152|gb|ACF13427.1| glycyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 486

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 143/469 (30%), Gaps = 57/469 (12%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G + Q S   G     + + PLG +   N+          +    + +    + +
Sbjct: 22  LSKRRGFVFQSSEIYGGLASCWDYGPLGVELKRNIKDAWWNAMTKHYDNIVGLDSAIMMN 81

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH--EEVMTDIFRS---------HIKSY 125
             +W  SG  DS+   M    D       Y   H  E  +  + +            + +
Sbjct: 82  PRVWEASGHVDSFNDPM---IDDKTSKRRYRADHLIEGYIASLEKKGKTEEAARVQGEYH 138

Query: 126 RNL---PFTFYQIQLKFRDELR----PRFGVMRSREF----------LMKDAYSFDLTPE 168
           + L   P       L  ++E++      F     R+F          +  +A    L PE
Sbjct: 139 KALATEPLVKSLYDLIIKEEIKAPDSGAFNWTEVRQFNLMFQAPLGAVADEASIVYLRPE 198

Query: 169 GSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            ++  +          R+    G+  I     +  + G+     I               
Sbjct: 199 TAQGIFVNFQTVREAARMKVPFGIAQIGKAFRNEIVKGNFIFRMIEFEQMEMQYFVKPGT 258

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            M+                  I ++    Y      H       +          IE  H
Sbjct: 259 QMEAFEEWRERRMSWYTESLGISKEKLHWYKHDQLAHYADAAYDIKFEFPFGIEEIEGIH 318

Query: 287 I---FYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--- 338
               F      +YS      F     + +   +     G+ R+  AV+  ++    I   
Sbjct: 319 SRTDFDLRRHQEYSGKSMEYFDQESKERYLPYVVETSAGSDRLFLAVLSDAYTEDEIDGE 378

Query: 339 -----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                    ++AP K  L  +    +   +  +K+   L K    V +DD G  IG ++ 
Sbjct: 379 SRVSLNLHPNLAPIKAGLFPL-MKKEGMPEIAQKLQKELQKQ-FKVQYDDAG-SIGKRYR 435

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             D +G P    +    + D  V ++ R T  +  ++L++V  + S + 
Sbjct: 436 RQDEIGTPYCFTIDHDTLQDGTVTVRDRDTTEQSRIALDQVKAFLSEKL 484


>gi|187736593|ref|YP_001878705.1| seryl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|238691874|sp|B2UPP6|SYS_AKKM8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|187426645|gb|ACD05924.1| seryl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 426

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 83/253 (32%), Gaps = 23/253 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTG 65
           ENP+D      +L    GMI           G   +   G +    +   +   Q    G
Sbjct: 135 ENPKDHV----ELAANLGMISFEDGARITGSGFVVYRGAGARLERALINFLLNTQTVENG 190

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+ VP +   +    +G+   + ++M    D   + M   PT E  +T+++R  I   
Sbjct: 191 YQEVGVPFVVKRECMEGTGQLPKFEEDMYGTED---QQMFLIPTAEVPVTNLYRDTILQE 247

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            +LP         FR E     R   G++R  +F   +     L PE S      +    
Sbjct: 248 SDLPIKMAAYTPCFRREAGSAGRINRGMIRVHQFDKVELVQI-LKPEDSFRELEVLRSHA 306

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I  +LGL    +   +G +G   +     E          +V     F D+       
Sbjct: 307 ESILQKLGLHYRVIELCTGDLGFSSAKTYDIEVWAPGQGQYLEVSSCSCFTDYQARRMRL 366

Query: 238 DFDDIISLNSIVE 250
            + D    N    
Sbjct: 367 RYKDADGKNQFCH 379


>gi|160878806|ref|YP_001557774.1| glycyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|189082277|sp|A9KJ36|SYG_CLOPH RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|160427472|gb|ABX41035.1| glycyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 462

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 127/365 (34%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y + F    L+++ ++ +         
Sbjct: 214 FTFRTREFEQMELEFFCEPDTDLE------WFAYWKQFCIDWLQTLGIKED--------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E  V     E   F SK   D                  I   +   +     + +   
Sbjct: 259 -EMRVRDHEKEELSFYSKATSD------------------IEFLFPFGWGELWGIADRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +D                         S    + F    G+ +   +    +GA RV  A
Sbjct: 300 YDLTQH------------------QNVSKEDLSYFDDEKGQRYIPYVIEPSLGADRVTLA 341

Query: 328 VIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + I          +  ++AP KI ++ +        +  EKIY  LSK   +
Sbjct: 342 FLCAAYDEEEIAEGDVRTVLHFHPAIAPVKIGVLPLSKK---LSENAEKIYTDLSKY-YN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  +       +D  V ++ R T  +E + +E++  Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSETDGAVTVRDRDTMEQERIKIEDLKAYF 456

Query: 439 SHRFS 443
             +F 
Sbjct: 457 EKKFE 461


>gi|227498855|ref|ZP_03928995.1| seryl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226904307|gb|EEH90225.1| seryl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 424

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y +L LG +    V   + ++   + G  E+  P + + +    +G+   + ++M RL 
Sbjct: 162 FYYYLGLGARLERAVYNFMLDQHTQKDGYTEVIPPYIVNRETMTGTGQLPKFHEDMYRL- 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 M   PT E  +T+ +R  I     LP         FR E     R   G++R  
Sbjct: 221 --EGMEMYLIPTAEVPLTNYYRDEIIDGAKLPIYLTAFTPCFRAEAGSAGRDTRGLIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F   PE S     K+      I   LGL    +   +G +G   +     E
Sbjct: 279 QFHKVEMVKF-TKPEDSFDELEKLTHDAEGILQALGLPYHVVCLCTGDLGFSATKCYDIE 337

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               A     ++    + +DF     N  F
Sbjct: 338 VWFPAQNKYREISSCSNCVDFQARRANIRF 367


>gi|260589680|ref|ZP_05855593.1| glycine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|331083112|ref|ZP_08332229.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539920|gb|EEX20489.1| glycine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|330405114|gb|EGG84651.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 464

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 118/367 (32%), Gaps = 75/367 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIAQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       +  +Y K F   L   H LGLK               
Sbjct: 214 FTFRTREFEQMELEFFCKPDTDLEWFAYWKQFC--LDWLHSLGLKD-------------- 257

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E        E   F SK   D                   +  +            + 
Sbjct: 258 -EEIRYRDHDKEELSFYSKATTDVE----------------FLFPFGWGELWGIADRTDY 300

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                                              F     + +   +    +GA R+V 
Sbjct: 301 DLTQHQNVSGQDM--------------------TYFDDETNQKYIPYVIEPSLGADRMVL 340

Query: 327 AVIESSHDGKGI-----------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           A + S++D + +            +  ++AP KI ++ +        +   K++ +LSK 
Sbjct: 341 AFLCSAYDEEVLDAEKNDVRTVLRFHPALAPVKIGVLPLSKK---LNEGALKVFEQLSKK 397

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +  +DD G  IG ++   D +G P  V       +D  V ++ R T  +E + +E++ 
Sbjct: 398 -YNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSETDGAVTVRDRDTMEQERVKIEDLK 455

Query: 436 NYASHRF 442
            Y   +F
Sbjct: 456 AYFEEKF 462


>gi|330719001|ref|ZP_08313601.1| seryl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 436

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 101/308 (32%), Gaps = 69/308 (22%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  + ++  R+A        
Sbjct: 179 GARLERAVYNFMLDEHRKEGYTEMITPIVVNDSAMFGTGQYPKFQEDAYRVA---GLDQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYSGETLPAEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F   PE S     KM  +   I  +LGL    +   +G +G   +  + V         
Sbjct: 296 KF-TKPEQSYDELEKMTANAENILQKLGLPYHVIALSTGDMGFSAAKTYDVE-------- 346

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                                     +       Y   S V N + F +   +       
Sbjct: 347 --------------------------VWMPQQQVYREISSVSNTEDFQARRMH------- 373

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGII- 339
                              T++   GK   V  +   G+   R +AA++E+  +  G + 
Sbjct: 374 ------------------ITYRDEQGKLQLVHTLNGSGLAVGRTIAAILENYQNEDGTVT 415

Query: 340 WPDSVAPF 347
            P+ + P+
Sbjct: 416 IPEVLQPY 423


>gi|225021317|ref|ZP_03710509.1| hypothetical protein CORMATOL_01336 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946050|gb|EEG27259.1| hypothetical protein CORMATOL_01336 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 426

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/431 (15%), Positives = 129/431 (29%), Gaps = 39/431 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V           G   + +P  +   L+        D   KE
Sbjct: 11  APKGVPDYVPPNSAQFIAVRDTFAHHIRLAGYEHIELPIFEDTTLFARGVGESTDVVSKE 70

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 71  MYTFADRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLGYYGPFFRYE-RPQAG--RY 127

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R F  +GLK   +   S       P   + 
Sbjct: 128 RQLQQVGVEAIGVDDPTLDAE---VIALANRCFSSIGLKDYRLELTSLGDATCRPAYREK 184

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF++     +     ++      +  +  +  ++ +   ++  + +P A         
Sbjct: 185 LQEFLLKLPLDDATRHRAEINPLRVLDDKRPEVQELTADAPLMLDYLSPQAQEHFEAVTG 244

Query: 267 LFD---SLPENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
             D             RG++              G +  +     + G  A      +  
Sbjct: 245 CLDDLGVTYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQELSG 304

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +G+G  R + A+            P  V  + ++L          +     +   L  
Sbjct: 305 IGFGLGVDRALLALDAEHTQAAD---PARVDVYGVAL------GAPAKRRLLTLVNELRA 355

Query: 375 VGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G      + D G + G+    AD  G    +++G + +    V +K+ +   + D+ L 
Sbjct: 356 AGIRADMSYGDRGLK-GAM-KGADRAGARFALVLGDRELDAGLVAVKNLVDHTQTDVPLG 413

Query: 433 EVINYASHRFS 443
           +V+    H   
Sbjct: 414 QVVETLGHHVR 424


>gi|160893490|ref|ZP_02074275.1| hypothetical protein CLOL250_01041 [Clostridium sp. L2-50]
 gi|156864885|gb|EDO58316.1| hypothetical protein CLOL250_01041 [Clostridium sp. L2-50]
          Length = 416

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 136/433 (31%), Gaps = 39/433 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI Q  +G   W     +    V A+ R    +    E+  P  +   L+        D 
Sbjct: 1   MITQAPRGTSDWFGDKMRTRTQVEAMARNLCEKFNIKEVITPVFEHTVLFQRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         +  +       P   + I   FR E +P  G
Sbjct: 61  VQKEMYTFVDKGGRSITLKPEGTAGAIRAYVENKLYAEPQPVKMFYITPAFRYE-KPESG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP------- 201
             R R+               ++     +  + +R   ++GL    +   S         
Sbjct: 120 --RLRQHHQFGVEFVGSPNPMAEVEVMTLVSTLIR---QIGLSDAKLHINSIGCPKCKKV 174

Query: 202 -----IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                I     HE  +     E  V      +D   P       D               
Sbjct: 175 YNDALISYLKGHEEGLCNTCKERMVKNPLRVIDCKEPGCKAIVKDAP-RTIDYLCEECDA 233

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGH--IFYFGTK--YSLPMSATFKG----ADGK 308
                       +   E      RG++     +F F  K  ++L     +       DGK
Sbjct: 234 HFKELQRLLTELEIPFEVDTGIVRGLDYYTKTVFEFVNKEGFTLCGGGRYDNLVYEIDGK 293

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +    +G +G+G  R++  + + + +         +AP K   + +       +    K+
Sbjct: 294 ETQPSVG-FGMGIERILYFLEKENIN---------LAPEKPIDLYVGIMGDSAKAKAYKL 343

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L   G  V  D M   + +Q   A+ L     +I+G   +  +   IK+  TG + +
Sbjct: 344 VYDLRLAGYIVETDYMNRSVKAQMKYANKLNARYTIIIGDNELETNTGRIKNMETGEQTE 403

Query: 429 MSLEEVINYASHR 441
           ++L+++ +    R
Sbjct: 404 IALDQLASVLEER 416


>gi|309799303|ref|ZP_07693550.1| histidyl-tRNA synthetase [Streptococcus infantis SK1302]
 gi|308117081|gb|EFO54510.1| histidyl-tRNA synthetase [Streptococcus infantis SK1302]
          Length = 426

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 142/444 (31%), Gaps = 57/444 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D           D+ D  S 
Sbjct: 175 AAYRQALIDYLTPLKDSLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDAESQ 234

Query: 246 NSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSA 300
                          A   D +  +  D            IE   +    G +Y   + A
Sbjct: 235 AHFDAVRQMLENLGVAYIIDTNMVRGLDYYNHTIFEFITEIEDNELTVCAGGRY-DGLVA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G +          +G+G  R++  +     + +G+  P   A   + +  +    + 
Sbjct: 294 YFGGPE-----TAGFGFGLGVERLLLVL-----EKQGVALPIENA-LDVYIAVLG---EG 339

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +K+
Sbjct: 340 ANVKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKAIITLGESEVESGQVTVKN 399

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             T     +SLE +    S  F  
Sbjct: 400 NQTREEVQVSLEAISQNFSEIFEK 423


>gi|183602387|ref|ZP_02963753.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683298|ref|YP_002469681.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191259|ref|YP_002968653.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196665|ref|YP_002970220.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218306|gb|EDT88951.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620948|gb|ACL29105.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249651|gb|ACS46591.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251219|gb|ACS48158.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295794252|gb|ADG33787.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9]
          Length = 491

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 157/475 (33%), Gaps = 66/475 (13%)

Query: 19  EIASHKLMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMS 70
           E+ S  L  R G +       G     + + PLG    DN+          T    + + 
Sbjct: 8   EVVS--LAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRSMVVTRPDVVGVD 65

Query: 71  VPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
              +  +++WV SG    +     E L    R+    +     E+    +  + +K    
Sbjct: 66  TSIILPSEVWVASGHVSVFNDPLIECLTCHKRHRADKLEESYAEKHNDQLPPNGLKD--- 122

Query: 128 LPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIF 185
                     +    E R    ++R+    ++D  S   L PE ++     +FV +  + 
Sbjct: 123 --IVCPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQ----GIFVDFKNVM 176

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                K     A +   G    +E         T+ F   +   F  P  + D+      
Sbjct: 177 TSSRSKPPFGIANT---GKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEDWHQYWIN 233

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------T 292
                         +  H E   + L    +   R +++ + F F              T
Sbjct: 234 ARTQWYIDLGVNPENLRHYEHPKEKLAHYSK---RTVDIEYRFGFQGSDWGELEGVANRT 290

Query: 293 KYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------- 337
            + L   A   G D        G+ +   +     G  R + A +  ++D          
Sbjct: 291 DFDLGAHAKHSGEDLSYFNQATGEKYIPYVIEPAAGLSRSLMAFLVDAYDVDEAPNTKGG 350

Query: 338 ------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                 +     +AP K +++ +    ++     + +   L      + +D+ G  IG +
Sbjct: 351 VDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQDLAQDLRLNDWMIDYDESGA-IGRR 408

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   D +G PL + V    + D  V I+ R T  +E ++L +V +Y + R ++ R
Sbjct: 409 YRRQDEIGTPLCITVDFDTLDDQAVTIRERDTMQQERVALTQVADYVAKRINDKR 463


>gi|194443808|ref|YP_002041780.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198241839|ref|YP_002216585.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857930|ref|YP_002244581.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|229558726|sp|B5FR62|SYH_SALDC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558727|sp|B5R581|SYH_SALEP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558730|sp|B4T0P8|SYH_SALNS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194402471|gb|ACF62693.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197936355|gb|ACH73688.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206709733|emb|CAR34085.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326624341|gb|EGE30686.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 424

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 146/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|18310916|ref|NP_562850.1| histidyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|32130127|sp|Q8XJ27|SYH_CLOPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|18145598|dbj|BAB81640.1| histidine-tRNA ligase [Clostridium perfringens str. 13]
          Length = 415

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/430 (15%), Positives = 125/430 (29%), Gaps = 36/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  +       P   +     FR E + + G
Sbjct: 61  VQKEMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYE-KMQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R REF       F              +  +    F   GL                +
Sbjct: 120 --RLREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFN 177

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATSDV 262
                        +  +        P    D  +      + E      +     +    
Sbjct: 178 EALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFS 237

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-----------PMSATFKGADGKDHY 311
             +   D +   +      I  G  +Y  T + +                 +  DG    
Sbjct: 238 KLKAYLDVMGI-EYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTP 296

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G+  +           D +GI  P+ V       + I +     R    K+   
Sbjct: 297 AMGFGLGLERL-------LLILDEEGIEIPEPVR----CEVYIGSMGDRARLEAMKLAFN 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D +G+ + +Q   A+ +G     ++G   + ++K++IK    G + ++SL
Sbjct: 346 LRKSGIKAEIDHLGKSVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEVSL 405

Query: 432 E--EVINYAS 439
           +  E++N   
Sbjct: 406 DINEIVNIVK 415


>gi|291541481|emb|CBL14591.1| glycyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 458

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 118/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D  ++  +   T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 150 MFKTFQGVTEDSKNEIYLRPETAQGIFVNFSNIQRTSRKKVPFGVAQIGKSFRNEITPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F       +      +  Y R F R  L S+ ++           
Sbjct: 210 FIFRVREFEQMELEFFCKPGTDLE------WFEYWRGFCRDWLYSLNIK----------- 252

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  +        SK+ + F   +              +             H++  
Sbjct: 253 -------EENLRLRDHSKEELCFYSKATTDFEYLFPFGWGELWGVADRTDYDLTQHSKTS 305

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             +L      +                             + +   +    +G  R+  A
Sbjct: 306 GKTLEYFDPTT----------------------------NEKYIPYVIEPSLGVERLFLA 337

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++  ++D + I             ++AP+K  ++ +        +    +Y +LS     
Sbjct: 338 LVVEAYDEEVIDEKDTRVVLRLHPTLAPYKACVLPLSKK---LNEQAGNVYEQLS-ADFM 393

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  +    + V D  V ++ R T  +E ++++++ +Y 
Sbjct: 394 TDYDDAG-SIGKRYRRQDEIGTPFCITYDFESVDDGCVTVRDRDTMQQERVAIDKLNDYI 452

Query: 439 SHRFS 443
           + +  
Sbjct: 453 AEKIK 457


>gi|258512005|ref|YP_003185439.1| histidyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478731|gb|ACV59050.1| histidyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 420

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 133/436 (30%), Gaps = 49/436 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSY 89
           I +  +G    LP   +A   + A++R+   R    E+  P  +  +L+        D  
Sbjct: 3   IRR-PRGTQDILPGAVEAWQALEAVVRDVFERANYEEIRTPIFEHTELFERGVGETTDIV 61

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            KEM    DR  +++   P     +   +  +    +      Y +   FR E +P+ G 
Sbjct: 62  SKEMYTFLDRGGRSVTLRPEGTAGVVRAYVENKLYGQGSLTKVYYLGPMFRYE-KPQRG- 119

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R R+                      +      +  ++G++ + +   S          
Sbjct: 120 -RLRQLHQVGVEVLGSELPAIDAE---VIELGYSLLKKVGMRDMTVELNSVGCSVCRPRH 175

Query: 200 --GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-QWTAPY 256
               I   L H+  + AD             D    S      +      + E       
Sbjct: 176 REKMIQRLLPHKEELCADCQVRLEKNPLRLFDCKNESCQQVLREANVPYIVDELCDDCRK 235

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF----------GTKYSLPMSATFKG 304
              +     +  D     ++   RG++      +            G +Y+  + A   G
Sbjct: 236 HLDAVEGYLRAMDVPYRLEKSLVRGLDYYTRTAWEITVPNFSTVLGGGRYNR-LVAELGG 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D        G      M  V AV+E+     G        P    +      D+     
Sbjct: 295 PD------VPGIGFAAGMDRVLAVLEAQGVSLGER-----QPLDAFICV---ADETAEHT 340

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L ++G     D  G  + SQF  AD LG    V++G   ++     +KH  TG
Sbjct: 341 AMAVLTSLRRLGVRCDRDYQGRSLKSQFKQADRLGAKFAVVIGESELAKGAATVKHLATG 400

Query: 425 IREDMSLEEVINYASH 440
            + D+   ++ +    
Sbjct: 401 EQRDVPFGQLADRIRE 416


>gi|168243301|ref|ZP_02668233.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450295|ref|YP_002046580.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|229558729|sp|B4TD92|SYH_SALHS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194408599|gb|ACF68818.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337681|gb|EDZ24445.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 424

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 147/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++   ++  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPVLGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|323341530|ref|ZP_08081769.1| serine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323091051|gb|EFZ33684.1| serine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 424

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 82/214 (38%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG +    V   + +E  + G  EM  P + +A     +G++  + +++ ++  
Sbjct: 163 FVYYKGLGARLERAVYNFMLDEHAKEGYTEMLPPYIVNAQTMYGTGQFPKFKEDVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP  F  +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRDEVIPTEKLPVYFTALTPCFRSEAGSAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE S     KM  +   I  +LGL    +   +G +G   +     E 
Sbjct: 280 FNKVEMVKFS-KPENSYDELEKMTQNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     ++    +  DF     +  + D   
Sbjct: 339 WMPAQNKYREISSCSNCEDFQARRAHIQYRDENG 372


>gi|331697361|ref|YP_004333600.1| Histidyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952050|gb|AEA25747.1| Histidyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 438

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 132/432 (30%), Gaps = 45/432 (10%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KGI  +LP        V   +    +R G   + +P  +   L+        D   KE
Sbjct: 26  APKGIPEYLPADGFVR--VRDALVAAADRAGYGHIELPVFEDTGLYARGVGESTDVVSKE 83

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR ++++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 84  MYSFADRGERSVTLRPEGTAGVVRAVIEHGLDRGGLPVKLRYAGPFFRYE-RPQAG--RY 140

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDL 206
           R+       +  +           +       F  LGL    +       A+  P   + 
Sbjct: 141 RQLQQVGVEAIGVDDPALDAEVIAVAD---EGFRSLGLTGYRLELTSLGDADCRPPYRER 197

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+      E     +       +  +  +   +++   ++    +  +A      ++
Sbjct: 198 LQEFLAGLPLDEATRHRAAINPLRVLDDKRPEVRALLADAPLLVDHLSEASAAHHAAVKR 257

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
             D L      + R             E  H    G +  +     + G         + 
Sbjct: 258 HLDDLGVAYVENPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMEVLGGQPLS 316

Query: 314 MGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              +GIG  R + A   E                  +  + +       RD    + A+L
Sbjct: 317 GVGFGIGVDRTLLACRAEGVAIDDAPR-------VDVFCVPLG---DAARDRLVVVAAKL 366

Query: 373 SKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G  V       G + GS    AD  G    +++G + +    V +K   +G ++ ++
Sbjct: 367 RAAGVRVDIAYGGRGLK-GSM-KAADRSGARFALVLGERDIEAGTVGVKDLGSGDQDAVA 424

Query: 431 LEEVINYASHRF 442
           L+ V+   + R 
Sbjct: 425 LDAVVETVAGRI 436


>gi|298694847|gb|ADI98069.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 463

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 129/365 (35%), Gaps = 74/365 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F             S  +     
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFA-------SDWLTSLNMNS--- 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++    +                 +   I  ++   +     + +   
Sbjct: 258 -ENMRLRDHDEDELSHYSN-----------------ATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLRK-------------HAEHSGEDFR------YHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++D +G          + +  ++AP+K +++ +            KI+ +LS   
Sbjct: 341 AFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSG---EAIKIFEQLSSK- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  V      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEA 455

Query: 437 YASHR 441
           + + +
Sbjct: 456 FLTEK 460


>gi|227503528|ref|ZP_03933577.1| histidyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227075564|gb|EEI13527.1| histidyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 429

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 137/431 (31%), Gaps = 38/431 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  + P        V   + E+ + +G   + +P  +   L+        D   KE
Sbjct: 14  APKGVPDYYPPESATFYKVRQTMVEQAHLSGFQHIELPIFEDTALFARGVGESTDVVSKE 73

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR ++++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 74  MYTFADRGERSVTLRPEGTAGVMRSVIQHNLDRGQLPVKLNYSGPFFRYE-RPQAG--RY 130

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R +  LGL    +   S       P   + 
Sbjct: 131 RQLQQVGVEAIGVDDPALDAE---VIALADRSYRALGLSGFRLELTSLGDRNCRPAYREK 187

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+   D  E     ++      +  +  +  + ++   ++  +              
Sbjct: 188 LQEFLFKLDLDEETRRRAEINPLRVLDDKRPEMQEQLADAPLMLDYLNAECREHFETVTG 247

Query: 267 LFDSLP---ENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
           + D +    E      RG++              G +  +     + G  A      +  
Sbjct: 248 MLDDMGVAYEINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSG 307

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             YG+G  R + A+     + +GI    S +   +  I +       +     I   L K
Sbjct: 308 IGYGLGVDRAILAL-----EAEGITLEGSDSRVDVYGIALGT---AAKRRMTGIINDLRK 359

Query: 375 VGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G   D+ + D G + G+    AD  G    +++G + + +  V +K      + D+ L 
Sbjct: 360 AGIAADMSFGDRGLK-GAM-KGADRAGARFALVLGDQELENGTVAVKDLAAHEQRDIELS 417

Query: 433 EVINYASHRFS 443
           +++        
Sbjct: 418 QLVAVLGRDLE 428


>gi|227518019|ref|ZP_03948068.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|307287079|ref|ZP_07567152.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|227074541|gb|EEI12504.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|306501858|gb|EFM71148.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|315151232|gb|EFT95248.1| seryl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315165765|gb|EFU09782.1| seryl-tRNA synthetase [Enterococcus faecalis TX1302]
          Length = 423

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGQVQYAH 379


>gi|134298623|ref|YP_001112119.1| histidyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|172044261|sp|A4J2J1|SYH_DESRM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134051323|gb|ABO49294.1| histidyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 419

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 143/429 (33%), Gaps = 29/429 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP   +    +  + R+     G  E+  P  +  +L+        D 
Sbjct: 1   MLTTRPRGTNDILPGEVEKWQFLEQLTRQVCREYGYGEIRTPIFEHTELFARGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR D+++   P         +  +       P   Y     FR + RP+ G
Sbjct: 61  VEKEMYTFTDRGDRSITLRPEGTASTVRAYVENKLHALPQPVKLYYTGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F       F             M    + I+HR+GL+++ +   S       P+
Sbjct: 120 --RYRQFHQFGVEVFGSNDPAIDAEVIAMA---MDIYHRIGLQNLKLHINSVGCPECRPV 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 E+     +        +   +    +  ++    +I            P   + 
Sbjct: 175 LRQRLQEYFKPHLSNLCSNCQGRYERNPLRILDCKSEKCQEIGQSAPTTLDVLCPECNSH 234

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSY 317
               +   D++  +  +  R +  G  +Y  T +   +  + A      G  +   +   
Sbjct: 235 FESVKTYLDAVGVSYIIDNRLV-RGLDYYTRTAFEIMTQDIGAQSSIGGGGRYNGLIEEC 293

Query: 318 GIGAMRVVAAV-----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           G  A   +        I  + + +GI +P +  P ++ +  + +  +        +   L
Sbjct: 294 GGPATPGIGFALGLERILLTAERQGITFPITRGP-QVYIATVGSGIERQ---AFALLQDL 349

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G     D +G  + +Q   A  L     VI+G +        ++    G ++++SL 
Sbjct: 350 RRQGIAAEKDYLGRSLKAQMKFAGKLDTRFVVILGEEEFDRGVAVVRDMQAGEQQEVSLR 409

Query: 433 EVINYASHR 441
           E++ +   R
Sbjct: 410 ELVLFIKAR 418


>gi|225869921|ref|YP_002745868.1| seryl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|254783047|sp|C0M858|SYS_STRE4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225699325|emb|CAW92703.1| seryl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 425

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKNLGARLERALYNFMLDEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTNFVLIPTAEVPLTNYYRGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPETSYEELEKMTANAEHILQKLKLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|150402786|ref|YP_001330080.1| histidyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|166228582|sp|A6VHK3|SYH_METM7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150033816|gb|ABR65929.1| histidyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 418

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 139/427 (32%), Gaps = 30/427 (7%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDS 88
            ++ Q  KG   +LP   K    +   +R+  +     E++ PT +S +L   ++G  D 
Sbjct: 1   MIMFQKPKGTRDFLPEEMKKRKVIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG--DE 58

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
              ++    D  D+ M   P     +   + +  K+    P   Y     FR E  P+ G
Sbjct: 59  IRTQLFVFKDHGDREMGLRPELTSSVARFYINEFKNT-PKPVKLYYFTNCFRYE-NPQAG 116

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKM-FVSYLRIFHRLGLK-----SIPMRAESGPI 202
             R REF    +         +      M       I     +       +    E   +
Sbjct: 117 --RYREFWQMGSELIGSNKPIADAEVINMAIEGLKEINMDFEINIGHLGVLKGVFEKYDL 174

Query: 203 GGDLSHEFIVLADTGETQVFCS-----KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             D  +E   L D  +     S     +   +  I  +  +  D+     ++ +     A
Sbjct: 175 SDDEGNEIRRLIDKEDMDGLKSALNRIESEKNIEISEKVFEVLDLKGGREVISKLKEKLA 234

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGS 316
                                   I  G     G  Y   M     G  +G       G 
Sbjct: 235 EFESSIAALENLDSILEFVPHEYIINFGIAR--GLDYYTGMVFEIYGKREGARQVCGGGR 292

Query: 317 YGIGAMRVVAA----VIESSHDGKGIIWP---DSVAPFKISLINIKAHDQVCRDACEKIY 369
           Y    + +        +  ++    I+       V    I ++ +K+ D +  + C KI 
Sbjct: 293 YD-NLIELFEGEPSPAVGFAYGFDRIMLNIDDFEVEEESIFVVPVKSSDMLLNE-CLKIA 350

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G  V  D MG ++      A+  G    +IVG   + + KV +K+  TG +  +
Sbjct: 351 KTLREAGKAVELDLMGRKLNKALNYANTKGIKKVIIVGENDILEGKVALKNMETGEQSLI 410

Query: 430 SLEEVIN 436
            L++++ 
Sbjct: 411 ELKDILT 417


>gi|118577094|ref|YP_876837.1| glycyl-tRNA synthetase (class II) [Cenarchaeum symbiosum A]
 gi|118195615|gb|ABK78533.1| glycyl-tRNA synthetase (class II) [Cenarchaeum symbiosum A]
          Length = 445

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 124/356 (34%), Gaps = 40/356 (11%)

Query: 101 DKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
            +     P T + +  D  R        LP    Q+   FR+E+ PR  ++R REF   +
Sbjct: 115 GEPAYLRPETCQSIFVDFPRIFKTMRGRLPLGIAQVGKSFRNEISPRQSLLRLREFYQAE 174

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
              F    +  +    ++  + LR+                  GG         A+  E+
Sbjct: 175 IEVFCNPGKLDEADLAEVAGAVLRV----------------DQGGKTVE--TGCAEAVES 216

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            +  ++            +F +   ++    ++          + E  FD   E      
Sbjct: 217 GIIPNRFVAYHL--GLLAEFYEKTGIDMGKSRFRRLGEKEKAFYAEAAFDFEVETTVGWL 274

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGA-----DGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
             +   +     + Y L   A   G      DG++     +    +G  R +  ++E S 
Sbjct: 275 ELVACNYR----SDYDLSAHAKKSGEKFEVMDGEEKVLPHVFEMSMGIDRSLYTILEHSL 330

Query: 334 DGKG------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +     +AP  + ++++       R+  ++I+  + +   D F D  G  
Sbjct: 331 REDAENERTVLSVRPYLAPVHVGVLSL-VKKGGLREKTDEIHGAIRR-DYDAFLDHSGA- 387

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++   D +G PL + +  + + D  V ++ R T  ++ + ++E+    S   +
Sbjct: 388 IGRRYRRLDEIGAPLAITIDHRTLEDGTVTVRRRDTMEQDRIKIDEINGLLSTELA 443


>gi|218296421|ref|ZP_03497164.1| glycyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218243215|gb|EED09746.1| glycyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 506

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 120/379 (31%), Gaps = 62/379 (16%)

Query: 89  YGKEMLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           Y   M +     + D    A +   T + +  +       + R LPF   QI   FR+E+
Sbjct: 165 YFNMMFKTYVGPVEDEAGLAYLRPETAQGIFINFKNVLDTTSRKLPFGIAQIGKAFRNEI 224

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            PR  + R REF   +   F                       R G      R       
Sbjct: 225 TPRNFIFRVREFEQMEIEYFV----------------------RPGEDERWHRY------ 256

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E +        ++  S++ +     S         +   ++ ++         + 
Sbjct: 257 --WVEERLKWWQ----EMGLSRENLVAYQQSPEELAHYAKATVDLLYRFPHGLEELEGIA 310

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           N   FD     K     GI          +++    A      G+     +     G  R
Sbjct: 311 NRTDFDLGSHTKDQEELGI---TARVLRNEHATQRLAYRDPETGRWFVPYVIEPSAGVDR 367

Query: 324 VVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            V A++  +   + +              +AP K+++I +  +     +  +++ ARL  
Sbjct: 368 GVLALLAEAFTREELPSGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLQA 427

Query: 375 VGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-------GSKFVS--DSKVEIKHRLTG 424
           +G   V ++D G  IG  +   D +G P  V V       G    S     V ++ R T 
Sbjct: 428 LGLGRVLYEDTGN-IGKAYRRHDEVGTPFAVTVDYDTLGQGKDGTSKLKDTVTVRDRDTM 486

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + ++E+  +   +  
Sbjct: 487 EQIRLHVDELEGFLKEKLR 505


>gi|172040627|ref|YP_001800341.1| histidyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|229558650|sp|B1VDK9|SYH_CORU7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|171851931|emb|CAQ04907.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 427

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/437 (15%), Positives = 134/437 (30%), Gaps = 51/437 (11%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KGI  ++P        V     +  +  G   + +P  +   L+        D   KE
Sbjct: 14  APKGIPDYVPPQSSEFLAVRTAFLDAAHNAGYEHIELPVFEDTSLFARGVGESTDVVSKE 73

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 74  MYTFADRGGRSVTLRPEGTAGVMRAVIQHNLDRGQLPAKLAYHGPFFRYE-RPQAG--RF 130

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R F  +GL    +   S       P     
Sbjct: 131 RQLQQVGVEAIGVDDPALDAE---VIALADRCFRSIGLDGFRLELTSLGDSTDRPAYRAK 187

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+      E     ++      +  +     ++++   +++   +  +         
Sbjct: 188 LQEFLATLPLDEETQRRAELNPLRVLDDKRPQMQEMLADAPLMKDHLSDSSREHFETVTG 247

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
           L + +     ++ R             E  H    G +  +     + G  A      + 
Sbjct: 248 LLEDMGVEYTINPRMVRGLDYYTKTCFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQDLS 306

Query: 314 MGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              +G+G  R + A+  E      G           + +  I   D   R     +   L
Sbjct: 307 GIGFGLGVDRALLALEAEGKTASTGRR---------VDVFGIPMGDAAKRHMA-ALINEL 356

Query: 373 SKVGC--DVFWDDMGEQIGSQ----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
              G   D+ + + G + G+      A A L      V++G + +    V +K    G +
Sbjct: 357 RAAGVAADMAYGNRGLK-GAMKAANRAHAQLA-----VVIGDQELEAGTVAVKDLQLGEQ 410

Query: 427 EDMSLEEVINYASHRFS 443
            D+++ +++ +   + +
Sbjct: 411 HDVAVADLVTHIRRQLA 427


>gi|257417382|ref|ZP_05594376.1| seryl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257159210|gb|EEU89170.1| seryl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
          Length = 423

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  EM  P + +      +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERALYNFMLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQ 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +   +   PT E  +T+ + + I   ++LP  F  +   FR E     R   G++R  
Sbjct: 223 DTD---LTLIPTAEVPLTNYYNNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM  +   I  +LGL    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTNNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQETYREISSCSNCEDFQARRAMIRYRDENDKVQYTH 379


>gi|162447682|ref|YP_001620814.1| histidyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|189082283|sp|A9NGF8|SYH_ACHLI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|161985789|gb|ABX81438.1| histidyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 420

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 153/433 (35%), Gaps = 46/433 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG Y  LP   +    + + +R+        E+  P ++ +++   E+   D   KE   
Sbjct: 7   KGTYDVLPTEAENWVALESYVRKLFKTYNYGEIRTPMMEYSNVIHRETELSDMVIKETYN 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D++D+ +   P     +   +  +    +      Y +   FR E RP+ G  R R+F
Sbjct: 67  FKDKSDRDLTLRPEGTAGVIRSYVENKLYAQAGVTKLYYMGPNFRYE-RPQKG--RFRQF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +                   ++  +Y  I+ RLGLK + ++  S  +G D S      A 
Sbjct: 124 MQFGCEVLGSNEPSIDAEVIEL--AYETIY-RLGLKQVSVKLNS--LGDDASKANYRQAL 178

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE---KLFDSLP 272
                    K   D      +     + S ++   +         D  NE   + FDS+ 
Sbjct: 179 IDFLTPVKDKLSKDSQDRLTHNPLRILDSKDTADIELIKNAPLPLDYLNETSKQHFDSVL 238

Query: 273 ENKRVSARGIEVGHIFYFGTKY----SLPMSATF--------KGADGKDHYVQM------ 314
           E   +     E+      G  Y       + AT          G  G+   +        
Sbjct: 239 ELLNLMNIPYEIDRKLVRGLDYYAHTVFEIHATIKGFGAQNALGGGGRYQNLVKELGGPD 298

Query: 315 ---GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                Y  G  R+++A+     + +GI      +P ++ +  I   DQ  R    ++   
Sbjct: 299 TPGIGYAFGMERLLSAL-----EQEGITLT---SPKQLDVYFITF-DQQSRKKAIQLQHI 349

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGF--PLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L         D +    G +  + + L +     +I+G   ++++ V++K+  T  + ++
Sbjct: 350 LRSENILSDIDHLNR--GFKPQLKEALRYDSKFIIIIGENELNNNVVQLKNTKTEEQVEV 407

Query: 430 SLEEVINYASHRF 442
           S++ +++      
Sbjct: 408 SMDTLLDTLKELL 420


>gi|145295768|ref|YP_001138589.1| histidyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|140845688|dbj|BAF54687.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 429

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 135/430 (31%), Gaps = 39/430 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  + P    A   V     ++ ++ G   + +P  +   L+        D   KE
Sbjct: 16  APKGVPDYAPPKSAAFLAVRDAFVDQAHKAGFEHIELPIFEDTGLFARGVGESTDVVSKE 75

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR ++++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 76  MYTFADRGERSVTLRPEGTAGVMRAVIEHSLDRGQLPVKLNYAGPFFRYE-RPQAG--RY 132

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R +  LGLK   +   S       P     
Sbjct: 133 RQLQQVGVEAIGVDDPALDAEIIALAD---RSYRSLGLKDFRLELTSLGDRHCRPEYRQK 189

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+      E     ++      +  +  +  ++ +   ++                 
Sbjct: 190 LQDFLFALPLDEETRKRAEINPLRVLDDKRPEVQEMTADAPLMLDHLDAECREHFETVTG 249

Query: 267 LFDSLPEN---KRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
           L D +           RG++              G +  +     + G  A      +  
Sbjct: 250 LLDDMGVPYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSG 309

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             YG+G  R + A +E+     G       A  ++ +  +       +     I  +L  
Sbjct: 310 IGYGLGVDRTMLA-LEAEGVTVG-------AERRVDVYGVPLGKDAKKALA-GIVNKLRA 360

Query: 375 VGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G      + D G + G+    AD       +++G + + ++ + +K      + D++L+
Sbjct: 361 AGISTDMSYGDRGLK-GAM-KGADRSNALYTLVLGEQELENNTIAVKDMRAHEQHDVALD 418

Query: 433 EVINYASHRF 442
           EV+ +   + 
Sbjct: 419 EVVAFLQGKL 428


>gi|62550772|emb|CAG44460.1| histidyl t-RNA synthetase [Lactobacillus buchneri]
          Length = 428

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 138/433 (31%), Gaps = 46/433 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
           +Q  KG    LP   +    V  I R+  N+ G   +  P  ++ +++        D   
Sbjct: 6   YQRPKGTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVE 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFG 148
           K+M    D+  + +   P         +  +       P     Y +   FR E RP+ G
Sbjct: 66  KQMYDFDDKGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYE-RPQSG 124

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      + +            +    L  F RLG+  + +   +  +G   + 
Sbjct: 125 --RQRQFTQIGCEALNSESPQIDVE---VISEALEFFKRLGINDLKLTINT--LGDKETR 177

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNE 265
           +    A     + F ++   D            + S +   ++  A   +  D    ++ 
Sbjct: 178 DAYHKALIDYLKPFYNQLSDDSKERMYKNPLRVLDSKDEQDKKIVANAPSILDSLSDYSA 237

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQM 314
           K F  +           E+      G  Y           S      +    G   Y  +
Sbjct: 238 KYFAEVKRLLDKLNIQYEIDSDMVRGLDYYTQTIFEIMSDSDVFGGGYVTVCGGGRYNGL 297

Query: 315 GS-----------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            S           YGIG  R++  V + + D          AP     +   + D    +
Sbjct: 298 ISQLGGPDEGGIGYGIGVERLLLLVNKENPDF---------APKYGPDVYFASADNAGDE 348

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++ K G +   +    ++GSQ   A         ++G K V +   E+    +
Sbjct: 349 LAFEVLDKIRKNGVEADKNYQDIKVGSQIKEAIRRKARYYAVIGKKEVDEGSFELSKVDS 408

Query: 424 GIREDMSLEEVIN 436
              + +S++E  +
Sbjct: 409 DKTQTVSVKEFED 421


>gi|20089821|ref|NP_615896.1| histidyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|32130123|sp|Q8TS62|SYH_METAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19914766|gb|AAM04376.1| histidyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 413

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 148/422 (35%), Gaps = 32/422 (7%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
            +G   +LP        V +++R      G  E+  PT +  DL+  +SG  +    E+ 
Sbjct: 6   PRGTRDFLPADTARRRYVESVMRNVVRNWGYSEIITPTFEHLDLFTLKSG--EGIVGELY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + M   P     +  ++ + ++     P   +  +  FR E RP+ G  R RE
Sbjct: 64  NFTDKGGRDMTLRPELTAPVMRLYVNELQP-FPKPLKLFYFENCFRYE-RPQKG--RFRE 119

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-----RLGLKSIPMRAESGPIGGDLSHE 209
           F              S      +  + L+        +LG  ++      G     +S +
Sbjct: 120 FWQFGVELIGSGKSDSDAEVIALADALLKAVGIQGDMKLGNLAVIRTLLKGLEPEIVS-K 178

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            + L D  E   +   + +   I +E     D+  L  +  ++  P       +  +L  
Sbjct: 179 VMRLVDKKE---YAGLESLLEEIGAEEQLKSDLFHLIHLEGKYILPKVKEIVGNIPELVG 235

Query: 270 SLPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                K + A G++    F    G  Y   M                G      +++   
Sbjct: 236 FEKTLKLLDAYGVDYSLDFGIARGLDYYTGMVFEVYAEGLGAQKQVCGGGSYQLIQLFGG 295

Query: 328 VIESSHDGKGIIWP--DSVAPFKISLINIKAHDQVCRDA------CEKIYARLSKVGCDV 379
             +    G GI +     + P    L+   + + V            K+ + L      V
Sbjct: 296 G-DVPSTGFGIGFDRIMEICP----LVPPASKNLVLVSKPATHIEAVKVASELRNY-LPV 349

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D M     +QF+ A+ +     VIVG K +   K+ ++  ++G +E ++LEE+I   +
Sbjct: 350 QIDLMERNFKAQFSYANTINADYVVIVGEKELEAGKLTLRDMVSGEQELLTLEEIIEKIT 409

Query: 440 HR 441
            +
Sbjct: 410 GQ 411


>gi|254383750|ref|ZP_04999099.1| histidyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342644|gb|EDX23610.1| histidyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 433

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 141/429 (32%), Gaps = 34/429 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP        V   + E   R G      P L+SA+++      +   +++  L 
Sbjct: 12  GTRDFLPAEMSVRQQVFGHLYETVERYGYGRYDGPILESAEIYEAKSGQEIANQQLYSLT 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           DR  + +   P     +  +  ++  S    P  +Y      R E RP+ G  R+RE   
Sbjct: 72  DRGGRRIALRPEMTPSVARMIAANAGS-LQFPVRWYSHVNCHRYE-RPQRG--RTREHWQ 127

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   F       +     +F     +   LG       +R     I   +  + + + +
Sbjct: 128 LNVDIFGSDSPNCEIE---IFDLIHDVMGSLGATRDMWVLRVGDRAILNSILRDVVKVPE 184

Query: 216 TGETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +   Q     D  +  P      D  +      + +   +   + ++V  +   +    +
Sbjct: 185 SAHQQTMALIDRWEKVPAEKLREDAAEFGVDGRMFDLLESTLRSGAEVLPDLPDEVREAS 244

Query: 275 KRVSARGIEVGHIFYF------GTKY--SLPMSATFKGADGKDHYVQMGSY----GIGAM 322
                   E   +F F      G +Y  S          +        G Y    G+   
Sbjct: 245 PLAQVMKSEAKDLFVFDPFIVRGLQYYTSTVFEVFDLSPENNRSLFGGGRYGDLAGLFTN 304

Query: 323 RVVAAV--------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           + +  +        +    D  G++ P++     +++I +   D     A  ++   L +
Sbjct: 305 QRIPGIGFGMGDVTLHDFLDTHGLL-PEAKNEVDVAVIPV---DDELIPASREVARTLRQ 360

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G          ++G + + AD  G    VIVG        V ++      + +++L +V
Sbjct: 361 AGIRTSTTLEPRKLGKELSRADRSGAGFAVIVGRDEWQRQAVVLRDLKGAAQHEIALADV 420

Query: 435 INYASHRFS 443
           + + + R +
Sbjct: 421 VAHLTERLA 429


>gi|332970285|gb|EGK09277.1| serine--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 471

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D EI  H  L    G+  + +    G    L  G+ A     +   + +    + G  E 
Sbjct: 174 DFEIKDHVDLGAALGLDFEKAAELSGARFSLMKGKIARLHRALAQFMLDTHTQQHGYTEC 233

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + S    + +G+   +G+++  +    D +       PT E  +T+  R  I S  
Sbjct: 234 YTPYIVSDSTLLGTGQLPKFGEDLFHVTRGGDESKLTQYLIPTAEVTLTNTVRDEILSLN 293

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 294 DLPMKLTAHSPCFRSEAGSHGKDTRGLIRQHQFDKVEMVQI-VQPEKSYEALEEMVTHAE 352

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 353 NILKLLELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 412

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 413 FKDENGKNRLVH 424


>gi|332656335|ref|YP_004301636.1| histidyl-tRNA synthetase [Tetragenococcus muriaticus]
 gi|326324678|dbj|BAJ84503.1| histidyl-tRNA synthetase [Tetragenococcus muriaticus]
          Length = 428

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 138/429 (32%), Gaps = 46/429 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEML 94
           KG    LP   +    V  I R+  N+ G   +  P  ++ +++        D   K+M 
Sbjct: 10  KGTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVEKQMY 69

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFGVMRS 152
              DR  + +   P         +  +       P     Y +   FR E RP+ G  R 
Sbjct: 70  DFDDRGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYE-RPQSG--RQ 126

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F      + +            +    L+ F +LG+  + +   +  +G   + +   
Sbjct: 127 RQFTQIGCEALNSESPQIDVE---VISEALQFFKQLGINDLKLTVNT--LGDKETRDAYH 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNEKLFD 269
            A     + +  +   D            + S +   ++  A   +  D    ++ K F+
Sbjct: 182 KALIDYLKPYYDQLSDDSKERMYKNPLRVLDSKDETDQKIVANAPSILDSLSDYSAKYFE 241

Query: 270 SLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQMGS-- 316
            + +         E+      G  Y           S      +    G   Y  + S  
Sbjct: 242 EVKKLLDKLNIKYEIDSDMVRGLDYYTQTIFEIMSDSDVFGGGYVTVCGGGRYNGLISQL 301

Query: 317 ---------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    YGIG  R++  V + + D      PD         +   + D    +   +
Sbjct: 302 GGPDEGGIGYGIGVERLLLLVQKENPDFTPKYGPD---------VFFASADDEGDELAFE 352

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++ K G     +    ++GSQ   A         ++G K V + K E+    +   +
Sbjct: 353 VLDKIRKNGVSADKNYQDVKVGSQIKEAIRRKTRYYAVIGKKEVEEGKFELSKVDSDQTQ 412

Query: 428 DMSLEEVIN 436
            +S++E  +
Sbjct: 413 TVSVKEFED 421


>gi|257087920|ref|ZP_05582281.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995950|gb|EEU83252.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
          Length = 423

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVRFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|315574025|gb|EFU86216.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315581976|gb|EFU94167.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 423

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAIFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|227518153|ref|ZP_03948202.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|257081307|ref|ZP_05575668.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|227074396|gb|EEI12359.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|256989337|gb|EEU76639.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
          Length = 423

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 13/212 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  EM  P + +      +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERALYNFMLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQ 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +   +   PT E  +T+ + + I   ++LP  F  +   FR E     R   G++R  
Sbjct: 223 DTD---LTLIPTAEVPLTNYYNNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM  +   I  +LGL    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTNNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             + A     ++    +  DF        + D
Sbjct: 339 VWIPAQETYREISSCSNCEDFQARRAMIRYRD 370


>gi|291287346|ref|YP_003504162.1| histidyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884506|gb|ADD68206.1| histidyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 420

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 135/427 (31%), Gaps = 56/427 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I +E        E  +P L+  +++     G  D   KEM    DR+   +   
Sbjct: 19  WQKVEKIFKETFKSFNYQEFYLPVLEKIEVFDRGIGGSTDIVEKEMFAFEDRDGTNVALR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLP---FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
           P   E    I R+++++    P     +Y I   FR E RP+ G  R R+F       F 
Sbjct: 79  P---EGTASIVRAYVENKLYNPPATSKYYYIGPMFRRE-RPQKG--RFRQFTQAGIEVFG 132

Query: 165 -LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGET 219
              P       N ++         LG++   +  E   IG        +E ++       
Sbjct: 133 SAGPAVDADVVNVLYTLACN----LGIEEF-VSMEINSIGCPECRPAYNEKLIAYLNDNK 187

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL---------FDS 270
           +  C                       +I +              E              
Sbjct: 188 EGLCEDCLRRLNKNPMRILDCKNDGCKAITKNAPVALDHLCGECEEHFNGVRNYLDTLGV 247

Query: 271 LPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA------- 321
                 +  RG++  V   F   T  +   S +  GA G+   +     G          
Sbjct: 248 PYNVNPMMVRGLDYYVRTAFELVT--NKLGSQSAVGAGGRYDGLIQLLGGPDTPGIGFAT 305

Query: 322 -MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC--D 378
            +  + A+       K     + +  F +S  +I            K+   +   G   D
Sbjct: 306 GIDRMVALAMLKETEKE----NEIDAFVVSFKDISDKK------ALKMVNDMRSAGISAD 355

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + +D    +   QF++AD  G    VI+G   ++     +K   TG +ED+ LE+ I Y 
Sbjct: 356 MDYDFRKMK--KQFSLADKNGARFTVILGEDEMNKGTAAVKDMETGGQEDVMLEKTIEYI 413

Query: 439 SHRFSNN 445
           S +   N
Sbjct: 414 SDKLRRN 420


>gi|291543338|emb|CBL16447.1| glycyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 459

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 122/366 (33%), Gaps = 72/366 (19%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P T + +  +       + + +PF   Q+   FR+E+ P  
Sbjct: 150 MFKTFQGVTEDSKSELYLRPETAQGIFVNFANIQRTTRKKIPFGVAQVGKSFRNEITPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F       +      +  Y R F +  L S+ ++           
Sbjct: 210 FIFRVREFEQMELEFFCKPGTDLE------WFDYWRSFCKNWLLSLHIK----------- 252

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D                 P E   +    +    +  +            +  
Sbjct: 253 EENLRLRD---------------HDPEELCFYSKATTDFEYLFPFGWGELWGVADRTDYD 297

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +   +                    Y  P          + +   +    +G  R+  A
Sbjct: 298 LNQHIKTSGK-------------QLDYFDP-------ETNERYVPYVIEPSLGVERLFLA 337

Query: 328 VIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++  ++D + I          +  ++APFK +++ +        +   ++Y  L+K    
Sbjct: 338 LLTEAYDEEEIAPGDVRTVMHFHPALAPFKAAVLPLSKK---LSEKATEVYEMLAKH-FP 393

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+ G  IG ++   D +G P  +      +  D+ V I+ R T  +E +++ +++ Y
Sbjct: 394 VDYDESG-SIGKRYRRQDEIGTPFCITYDFDTLEKDNCVTIRDRDTMEQERVAISDLVAY 452

Query: 438 ASHRFS 443
              +  
Sbjct: 453 LEKKIE 458


>gi|70726352|ref|YP_253266.1| glycyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|123762313|sp|Q4L6R5|SYG_STAHJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|68447076|dbj|BAE04660.1| glycyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
          Length = 463

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 133/368 (36%), Gaps = 76/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    LK + +           +
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASQWLKDLNI-----------N 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++    +                 +   I  ++   +     + +   
Sbjct: 257 EENMRLRDHDEEELSHYSN-----------------ATTDIEYRFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLKK-------------HSEHSGEDF------KYHDPETNEKYVPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS-KV 375
           A +  +++ +G          + +  ++AP+K +++ +        +   KI+ +LS K 
Sbjct: 341 AFLCDAYEEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSEEAIKIFEQLSSKF 397

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D    D  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+ 
Sbjct: 398 AIDF---DESQSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELE 454

Query: 436 NYASHRFS 443
            + + + +
Sbjct: 455 TFLAEKVA 462


>gi|257417514|ref|ZP_05594508.1| seryl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257159342|gb|EEU89302.1| seryl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
          Length = 423

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG      V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGACLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|256823054|ref|YP_003147017.1| histidyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796593|gb|ACV27249.1| histidyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 423

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 143/437 (32%), Gaps = 48/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        + +++R+     G  E+ +P ++   L+  S G   D   K
Sbjct: 6   QAVRGMNDILPDSTPHWQKLESVLRQLMASYGYNEIRMPVVEKTHLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTASCVRAGIEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--------------KSIPMRA 197
            R+F      +F ++          M     R++  +G+              ++     
Sbjct: 122 YRQFHQLGVETFGVSTPDVDAELILM---TARLWKMIGIHSSVHLEINSLGSNEARAEYR 178

Query: 198 ES-----GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           +       PI   L  +      T   ++  SK+     +  +    ++ +   S     
Sbjct: 179 DKLVAFLEPIKDLLDEDSQRRLTTNPLRILDSKNPEVQKLVKDAPKLNEHLDEESEQHFE 238

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDH 310
                  ++     +  +L        R +        G + ++     + G       H
Sbjct: 239 RLCQILDTNNIPYTINTNLVRGLDYYNRTVFEWVTDKLGAQGTICAGGRYDGLTEQLGGH 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIY 369
                 + +G  R+VA + E +        P+ VA   + ++ +  H ++      E++ 
Sbjct: 299 STPASGFAMGLERIVALIQEMA--------PEEVATADVYMVALGEHAELSALQLAEQLR 350

Query: 370 ARLSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI 425
            +   +        M    G    QF  AD  G  + +++G + V D  V +K+ R    
Sbjct: 351 DQWPAIRVR-----MNCGAGNFKKQFKRADKSGAKIALVIGEQEVQDGTVGVKYLREHKE 405

Query: 426 REDMSLEEVINYASHRF 442
           +  +S  ++        
Sbjct: 406 QLVVSQRDISQLLEQYL 422


>gi|29377733|ref|NP_816887.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227555642|ref|ZP_03985689.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229547172|ref|ZP_04435897.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|229550742|ref|ZP_04439467.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255971509|ref|ZP_05422095.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255974459|ref|ZP_05425045.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256618568|ref|ZP_05475414.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256761814|ref|ZP_05502394.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256854941|ref|ZP_05560302.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256957056|ref|ZP_05561227.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256960920|ref|ZP_05565091.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256963942|ref|ZP_05568113.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257078733|ref|ZP_05573094.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|257083965|ref|ZP_05578326.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257087795|ref|ZP_05582156.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|257088440|ref|ZP_05582801.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257418881|ref|ZP_05595875.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257421304|ref|ZP_05598294.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|293384815|ref|ZP_06630660.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388237|ref|ZP_06632756.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294781208|ref|ZP_06746555.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300861572|ref|ZP_07107656.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307268871|ref|ZP_07550236.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307273946|ref|ZP_07555156.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277353|ref|ZP_07558451.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307283995|ref|ZP_07564165.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|307286509|ref|ZP_07566608.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|307289982|ref|ZP_07569908.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|312901342|ref|ZP_07760623.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312902989|ref|ZP_07762178.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|312908857|ref|ZP_07767796.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312952975|ref|ZP_07771831.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|312979500|ref|ZP_07791182.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|46577436|sp|Q82YY9|SYS2_ENTFA RecName: Full=Seryl-tRNA synthetase 2; AltName: Full=Serine--tRNA
           ligase 2; Short=SerRS 2; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 2
 gi|29345201|gb|AAO82957.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227175219|gb|EEI56191.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229304175|gb|EEN70171.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|229307754|gb|EEN73741.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|255962527|gb|EET95003.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255967331|gb|EET97953.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256598095|gb|EEU17271.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256683065|gb|EEU22760.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256709454|gb|EEU24501.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256947552|gb|EEU64184.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256951416|gb|EEU68048.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256954438|gb|EEU71070.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256986763|gb|EEU74065.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256991995|gb|EEU79297.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256995825|gb|EEU83127.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256997252|gb|EEU83772.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257160709|gb|EEU90669.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257163128|gb|EEU93088.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|291077897|gb|EFE15261.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082384|gb|EFE19347.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294451671|gb|EFG20126.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|295112309|emb|CBL30946.1| seryl-tRNA synthetase [Enterococcus sp. 7L76]
 gi|300849033|gb|EFK76786.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306498976|gb|EFM68468.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|306502382|gb|EFM71659.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306503366|gb|EFM72615.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306505987|gb|EFM75159.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306509254|gb|EFM78314.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306514787|gb|EFM83337.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310625295|gb|EFQ08578.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|310629116|gb|EFQ12399.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310633657|gb|EFQ16940.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|311287682|gb|EFQ66238.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311291575|gb|EFQ70131.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315026612|gb|EFT38544.1| seryl-tRNA synthetase [Enterococcus faecalis TX2137]
 gi|315030106|gb|EFT42038.1| seryl-tRNA synthetase [Enterococcus faecalis TX4000]
 gi|315033599|gb|EFT45531.1| seryl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036264|gb|EFT48196.1| seryl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315143579|gb|EFT87595.1| seryl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315148283|gb|EFT92299.1| seryl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315151248|gb|EFT95264.1| seryl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315153733|gb|EFT97749.1| seryl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155041|gb|EFT99057.1| seryl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315158670|gb|EFU02687.1| seryl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315163393|gb|EFU07410.1| seryl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315165668|gb|EFU09685.1| seryl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315168475|gb|EFU12492.1| seryl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315172092|gb|EFU16109.1| seryl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315174225|gb|EFU18242.1| seryl-tRNA synthetase [Enterococcus faecalis TX1346]
 gi|315576187|gb|EFU88378.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315579766|gb|EFU91957.1| seryl-tRNA synthetase [Enterococcus faecalis TX0630]
 gi|315582998|gb|EFU95189.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309A]
 gi|323479199|gb|ADX78638.1| seryl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327536390|gb|AEA95224.1| serine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329577273|gb|EGG58736.1| serine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 423

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 13/212 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  EM  P + +      +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERALYNFMLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQ 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +   +   PT E  +T+ + + I   ++LP  F  +   FR E     R   G++R  
Sbjct: 223 DTD---LTLIPTAEVPLTNYYNNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM  +   I  +LGL    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTNNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             + A     ++    +  DF        + D
Sbjct: 339 VWIPAQETYREISSCSNCEDFQARRAMIRYRD 370


>gi|242398937|ref|YP_002994361.1| Glycyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|259511937|sp|C6A317|SYG_THESM RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|242265330|gb|ACS90012.1| Glycyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 570

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 87/559 (15%), Positives = 161/559 (28%), Gaps = 141/559 (25%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  ++G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 12  QDLMRRRGFVWSSFEIYGGARGFYDYGPLGAIIKRKIEKKIREAFIREGFFEIETPDITP 71

Query: 77  ADLWVESG-------------------RYDSYGKE------------------------- 92
            ++++ SG                   R D   +E                         
Sbjct: 72  EEVFIASGHVDKFVDPLTECKKCGSRFRADHIVEEVLGIDTEGLSAEHLTQLIREHDIKC 131

Query: 93  ---------------ML--RLADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQ 134
                          M    +    DK     P T + +  +  R +  +   LPF  +Q
Sbjct: 132 PECGGELADVWYFNLMFETYIGPYKDKKGYLRPETAQGIFVNFKRLNNFARNQLPFGVFQ 191

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSF-------DLTPEGSKHSYNKMF--------- 178
           I   +R+E+ PR G++R REF   +   F           E  K    + +         
Sbjct: 192 IGKAYRNEISPRQGMLRLREFSQAEVEIFFDPKQKEHPHFEEVKDEVLRFYPIENQLKNL 251

Query: 179 -------------------------VSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSH 208
                                        RI   +G+ +  +R      E        + 
Sbjct: 252 GMIELTLDEAVKKGYVMNTFFAYYMAMVKRILLDIGIPANKIRFRQQLPEERAHYSSDTW 311

Query: 209 E-------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +       F  +   G                  +           I+++          
Sbjct: 312 DVEIHSERFGWIECVGIAYRGNYDLSRHVKESGADLTVMIHYKEPKIIKKLKISLNMKRV 371

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-------------GK 308
               K        K       E+  IF    K        ++                G+
Sbjct: 372 GPKLKGDAKRINQKLQEMTQEELKKIFEGLEKIGKVFLDGYELEKEDFIIKEVEEKVHGE 431

Query: 309 DHYVQMGSYGIGAMRVVAAVIESS--HDGKGIIWPDS---VAPFKISLINIKAHDQVCRD 363
                +     G  R    ++E+S   D    ++      +AP +++++ + A  +    
Sbjct: 432 KLVPHVLEPSFGIDRPFYLLLENSIVMDEDSRVYLKIKKDMAPIEVAVLPLVAK-EPLTS 490

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I+  L K G  V +D+  + +G ++A  D +G P  V + ++   D+ V I+ R T
Sbjct: 491 IAYEIFRTLQKEGFIVVYDE-KDTVGRRYARYDEIGTPYCVTIDNQTPEDNTVTIRDRDT 549

Query: 424 GIREDMSLEEVINYASHRF 442
             +  + +EE+        
Sbjct: 550 REQIRVKIEELPEKLRELI 568


>gi|168238259|ref|ZP_02663317.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194736154|ref|YP_002115584.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251796|ref|YP_002147475.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|204929541|ref|ZP_03220615.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|238912642|ref|ZP_04656479.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|229558725|sp|B5F197|SYH_SALA4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558732|sp|B4TR94|SYH_SALSV RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194711656|gb|ACF90877.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197215499|gb|ACH52896.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197288861|gb|EDY28234.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204321260|gb|EDZ06460.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 424

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 146/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGIAD-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|16331375|ref|NP_442103.1| histidyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501002|sp|Q55653|SYH_SYNY3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1001546|dbj|BAA10173.1| histidyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 447

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 125/438 (28%), Gaps = 40/438 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G    LP        V AI +   +R    E+  P  +   L+    G   D  GK
Sbjct: 5   QAIRGTRDILPPETNYWQWVEAIAKSILDRALYQEIRTPIFEQTSLFERGIGEATDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR D+ +   P     +   +              +     FR E RP+ G  R
Sbjct: 65  EMYSFTDRGDRPITLRPEGTAGVVRAYIEQNLQAAGGVQRLWYTGPMFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +      +      I   LGL ++ +   S   GGD      
Sbjct: 122 QRQFHQLGVEVLGSADPRADVE---VIALGTDILKALGLSNLSLALNSVGNGGDRQ---- 174

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E  +     F     P      +         +                + D L
Sbjct: 175 ---RYREALIAYLTPFKAELDPDSQDRLERNPLRILDSKAKRTQEIVQD---APSILDHL 228

Query: 272 PENKRVSARGIE-----VGHIFYF------GTKY--SLPMSATFKGADGKDHYVQMGSYG 318
             + +     ++     +G  +        G  Y               +      G Y 
Sbjct: 229 GVDSQRHFDQVQQLLTNLGIAYQLTPTLVRGLDYYTHTAFEIQSSDLGAQATVCGGGRYD 288

Query: 319 IGAMRVVA----AVIESSHDGKGIIWPDSVA--PFKISLINIKAHDQVCRDACEKIYARL 372
                +      AV  +    + II    +A  P     + + +  +        +  +L
Sbjct: 289 GLVAELGGPVTPAVGWAMGLERLIILLQQMATPPAPSPDLYLISKGEKAEPQALILAQKL 348

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V  D      G QF  AD  G    +++G   ++   V++K      +E + L+
Sbjct: 349 RNQGLAVALDLSASAFGKQFKRADKSGAIACLVLGDGEIATGTVQLKWLADKAQETLQLQ 408

Query: 433 EV---INYASHRFSNNRP 447
           ++   I     R + +R 
Sbjct: 409 DLMGNITELKQRLAGHRE 426


>gi|258423993|ref|ZP_05686875.1| glycyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257845614|gb|EEV69646.1| glycyl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 463

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 133/365 (36%), Gaps = 74/365 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L S+           ++S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASDWLTSL-----------NMS 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + + L D  E ++    +                 +   I  ++   +     + +   
Sbjct: 257 SDNMRLRDHDEDELSHYSN-----------------ATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLRK-------------HAEHSGEDFR------YHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++D +G          + +  ++AP+K +++ +            KI+ +LS   
Sbjct: 341 AFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSG---EAIKIFEQLSSK- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  V      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEA 455

Query: 437 YASHR 441
           + + +
Sbjct: 456 FLTEK 460


>gi|20093592|ref|NP_613439.1| glycyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|34395858|sp|Q8TYY9|SYG_METKA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|19886451|gb|AAM01369.1| Glycyl-tRNA synthetase, class II [Methanopyrus kandleri AV19]
          Length = 571

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHD--GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G+  Y  +     G  R++  V+E + D       +P  +AP ++ +  +     +  + 
Sbjct: 423 GERFYPHVIEPSYGIDRILYCVLEHNFDPEEGVFRFPAWLAPIEVGVFPLLKRSDMV-EY 481

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L + G  V +DD G  IG ++A AD +G P  V V  + + D  V I+ R T 
Sbjct: 482 ARRVARMLREEGFTVEYDDSG-SIGRRYARADEIGVPYCVTVDHETLEDDTVTIRDRDTT 540

Query: 425 IREDMSLEEVINYASHRF 442
            +  + ++E+ +      
Sbjct: 541 EQVRVEVDELADVLRGLI 558



 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 63/224 (28%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVES 83
            +L    I+  ++G Y + PLG      +    RE   ++ G +E+  P L   +++  S
Sbjct: 18  FILPAFRIYGGARGFYDYGPLGALLKRKIEEKWREYYVHKEGFMEIEAPNLLIGEVFEAS 77

Query: 84  G-------------------RYDSYGKE-------------------------------- 92
           G                   R D   +E                                
Sbjct: 78  GHVEHFIDPMTHCSECGEFFRADHLAEEELGVDAEGMSPEELEDLIREHDLRCPECGGEL 137

Query: 93  --------MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRD 141
                   M       +  +     P   + +   F+   + + + LPF   QI   +R+
Sbjct: 138 AEVTEFNLMFDTNIGPKEGRTGYLRPETAQAIFIQFKDLYRWARQKLPFGVVQIGRAYRN 197

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           E+ PR GV+R REF   +A  F    E     + +     L+ +
Sbjct: 198 EISPRQGVIRLREFTQAEAEVFFDPEEKEYPGFERYADEVLKFY 241


>gi|313123580|ref|YP_004033839.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280143|gb|ADQ60862.1| Histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684223|gb|EGD26399.1| histidine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 428

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 150/445 (33%), Gaps = 66/445 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      + V    R+   R    E+  P+ ++ +L+  S     D   K
Sbjct: 4   QRPKGTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     +   PF  Y I   +R E RP+ G 
Sbjct: 64  EMYDFEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +        +    +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSDGYLADVET---ILLGHDLLAELGVKNYELHINTLGDSEVRQAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK   D         F            
Sbjct: 178 HDALVDYFTPVKDQLSEDSQRRLGKNPLRILDSKAEED-------QQFLPEAPKIRDYLD 230

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF----GTKYSLPMSATFKGA 305
             +       + +               RG++   G IF F     T ++ P  +T  G 
Sbjct: 231 EESKENFNKILASLDKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASP--STVLGG 288

Query: 306 DGKDHYVQMGS--------YGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINI 354
              +H V+  S        +GIG  R++  + + +    + +GI            + NI
Sbjct: 289 GRYNHLVEEFSGPETPAVGFGIGEERLMLVLSKQNPEMFEDQGI---------DFFITNI 339

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                +      ++  +L  +G    +D   +++ +QF  AD +G    V +G+K +++ 
Sbjct: 340 GEGTDI---KAVEVARQLRSLGFSAQYDVDQKKLKAQFRKADRVGARYVVTLGAKELAEG 396

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
           K+ +K    G +  +   ++ + A+
Sbjct: 397 KLTVKRLSDGQQFSLEFTDLEDKAN 421


>gi|42522689|ref|NP_968069.1| glycyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|59798543|sp|Q6MNT9|SYG_BDEBA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|39573885|emb|CAE79062.1| glycyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
          Length = 446

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/489 (14%), Positives = 149/489 (30%), Gaps = 131/489 (26%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSA 77
           L  R G + Q S   G     + + PLG     NV         R    + +    L   
Sbjct: 15  LSKRRGFVFQSSEIYGGLGSCWDYGPLGSLMKLNVKRAWWNAMTRRPDIVGLDAAILMHP 74

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH--------------------EEVMTDI 117
            +W  SG  D +      L D  +    +   +                    E     +
Sbjct: 75  MVWKASGHVDGFSD---PLVDCKECKTRFRADNTDSYINEKKCPNCGSKNLSEERSFNLM 131

Query: 118 FRSHI-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFG 148
           F++H+                              S   +PF    I   FR+E+ P   
Sbjct: 132 FKTHMGPLEDSGSVVYLRPETAQGHFVNFQNCQQASRYKIPFGIAAIGKSFRNEITPGNF 191

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R+REF   +   F + P   +  + +        + + G+K                 
Sbjct: 192 IFRTREFEQMEMQYF-VEPGTDEQFFKEWKERRWNFYIKFGIK----------------- 233

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                               +      +       +   +  ++   ++    +HN   F
Sbjct: 234 ------------------PENLKFKDHDKLAHYAKAAVDVEFKFPMGFSELEGIHNRSDF 275

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAA 327
           D     K                       +  +     K  Y   +    +G  R+  A
Sbjct: 276 DLSQHMKFSGK-------------------NLEYFDEPNKKKYIPYVIETAVGCDRLFLA 316

Query: 328 VIESSH------DGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  ++      D  G       +     +APFK++++ +   +++     EK+  +L++
Sbjct: 317 FLCDAYREEVTTDEAGKEDVRVVMGLHPEIAPFKVAVLPLSKKEELSS-ISEKLRDQLAE 375

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              DV +D+  + IG ++   D +G P  V V    ++D  V ++HR    +E +++ ++
Sbjct: 376 -DFDVNYDES-QSIGKRYRRQDEIGTPFCVTVDFDTINDQAVTVRHRDKMTQERVAITQL 433

Query: 435 INYASHRFS 443
             Y + +  
Sbjct: 434 NAYIAAKLK 442


>gi|167043358|gb|ABZ08061.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine crenarchaeote HF4000_ANIW141O9]
          Length = 479

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 119/366 (32%), Gaps = 46/366 (12%)

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           M ++      ++A +   T + +  D  R        LP    QI   FR+E+ PR  ++
Sbjct: 139 MFQVGIGPEGEEAYLRPETCQSIFVDFPRLFKTMRGKLPLGIAQIGKSFRNEIAPRQSLL 198

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REF   +   F                       RL         E+  I   + +E 
Sbjct: 199 RLREFYQAEIEVFCNPA-------------------RLNDLDKFSEIENTKIPIQVDNEV 239

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            ++            +           +F +   ++    ++          + E  FD 
Sbjct: 240 KIMTCKEAVDSKIIPNKFVAYYLGILIEFYEKAGIDIQKSRFRKLEEKEKAFYAEVAFDF 299

Query: 271 LPENKRVSARGIEV---------GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             E        +           GH      K+           D +     +    +G 
Sbjct: 300 EVETTTGWLELVACNYRADYDLSGHATKSKEKF------EVMDND-EKVLPHVFELSMGI 352

Query: 322 MRVVAAVIESSHDGKG------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            R +  ++E S           +     ++P  + ++++   D +  +  ++IY ++ + 
Sbjct: 353 DRSLYTILEHSLREDKENDRTVLSLKPYLSPIHVGVLSLVKKDGLA-EKTDEIYLKIKRK 411

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DVF D  G  IG ++   D +G P  + +  + + D  V ++ R +  +  + + E+ 
Sbjct: 412 -YDVFLDHSGA-IGRRYRRLDEVGAPYAITIDHQTLQDDTVTLRMRDSMEQNRIKVSELD 469

Query: 436 NYASHR 441
              S +
Sbjct: 470 EILSKK 475



 Score = 38.8 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGA-IEMSVPTLQSADLWVESGRYDSYGK 91
           G + + P G    +    + R E  R    IE+    + S  ++  SG   S+  
Sbjct: 22 AGFWEYGPAGVGLKNKFIELWRRELIRRDKMIEVDGSQIMSKSVFEASGHLASFAD 77


>gi|116513950|ref|YP_812856.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275280|sp|Q04AV4|SYH_LACDB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116093265|gb|ABJ58418.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 428

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 153/445 (34%), Gaps = 66/445 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      + V    R+   R    E+  P+ ++ +L+  S     D   K
Sbjct: 4   QRPKGTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     +   PF  Y I   +R E RP+ G 
Sbjct: 64  EMYDFEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +        +    +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSNGYLADVET---ILLGHDLLAELGVKNYELHINTLGDSEVRQAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK   D    SE     D +   S    
Sbjct: 178 HDALVDYFTPVKDQLSEDSQRRLGKNPLRILDSKAEEDQQFLSEAPKIRDYLDEES---- 233

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF----GTKYSLPMSATFKGA 305
                     + +               RG++   G IF F     T ++ P  +T  G 
Sbjct: 234 ---KENFNKILASLDKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASP--STVLGG 288

Query: 306 DGKDHYVQMGS--------YGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINI 354
              +H V+  S        +GIG  R++  + + +    + +GI            + NI
Sbjct: 289 GRYNHLVEEFSGPETPAVGFGIGEERLMLVLSKQNPEMFEDQGI---------DFFITNI 339

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                +      ++  +L  +G    +D   +++ +QF  AD +G    V +G+K +++ 
Sbjct: 340 GEGTDI---KAVEVARQLRSLGFSAQYDVDQKKLKAQFRKADRVGARYVVTLGAKELAEG 396

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
           K+ +K    G +  +   ++ + A+
Sbjct: 397 KLTVKRLSDGQQFSLEFTDLEDKAN 421


>gi|242373870|ref|ZP_04819444.1| glycyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348424|gb|EES40026.1| glycyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 463

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 133/367 (36%), Gaps = 74/367 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + ++ + F    LK + +           +
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNFWKTFASQWLKDLNI-----------N 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D  E ++    +                 +   I  ++   +     + +   
Sbjct: 257 EENMRLRDHDEDELSHYSN-----------------ATTDIEYRFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLQK-------------HSEHSGEDF------KYHDPETNEKYVPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  +++ +G          + +  ++AP+K +++ +            KI+ +LS+  
Sbjct: 341 AFLCDAYEEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSSEAIKIFEQLSQ-N 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELET 455

Query: 437 YASHRFS 443
           + + +  
Sbjct: 456 FLAEKIK 462


>gi|145592022|ref|YP_001154024.1| glycyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283790|gb|ABP51372.1| glycyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 585

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 89/544 (16%), Positives = 157/544 (28%), Gaps = 147/544 (27%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ---NRTGAIEMSVPTLQSADLWVESG---------- 84
           G Y + PLG +   N+    R       +   IE+  P +    ++  SG          
Sbjct: 29  GFYDYGPLGVQLRRNIVEKWRRTFVLPFQDLIIEVETPIIMPEPVFKASGHLDHFTDYVV 88

Query: 85  ---------RYDSYGKE------------------MLRLADRNDKAMIYGPTHE------ 111
                    R D   +E                  + RL   +    I  P         
Sbjct: 89  GCTKCGRKYRADHLVEEELAKRGLKISTEGLSAAELERLIVEHR---IVCPNCGGPLGRV 145

Query: 112 EVMTDIFRSHIKSY---------------------------RNLPFTFYQIQLKFRDELR 144
           E    +F++ I  Y                           R  PF   QI    R+E+ 
Sbjct: 146 ESFNLLFKTTIGPYSENAGYLRPETAQGIFVAFPRLAEYVGRRHPFGVAQIGRVARNEIS 205

Query: 145 PRFGVMRSREFLMKDAYSFDLTP------------------------------------E 168
           PR G+MR REF   +   F                                        E
Sbjct: 206 PRGGLMRLREFTQMEIELFFDPQNPKCPYFAEVEGLEIPIVPEEFVAKGQTEPLFLTARE 265

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +   Y   ++++        LK + +  E     G L HE    +     Q+  ++ F 
Sbjct: 266 VAARGYANEWMAFFMALAAKFLKELGVPLERQKFLGKLPHERAHYSAKSYDQMVLTERFG 325

Query: 229 DFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGH 286
              +         D+        +              ++    P    +  +  + +G 
Sbjct: 326 WVEVSGHAYRTDYDLSGHMRHSGREMYLERRLPAPKEVEVVRIYPNPNAIREKYGDRIGE 385

Query: 287 IFYFGTKYSLPMSATFKGA--------------------------DGKDHYVQMGSYGIG 320
           +     K +    A   G                           D +     +     G
Sbjct: 386 VIK-AIKENEAYVAKTFGEGKQEVTVGEYIVTRDMVFIKTEKRKTDLEKFIPHVVEPSFG 444

Query: 321 AMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             R++ AV+E +   +G    +  P  VAP  + ++ I        +    +   L+  G
Sbjct: 445 LDRIMYAVLEYAVAEEGGRVYLRLPADVAPINVCILPIVKRQDYV-EIGRSLRKELATEG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              ++DD G  IGS++A  D +G PL V +  +  +D  V I+ R T  +  + L +V  
Sbjct: 504 FLAWYDDEG-TIGSRYAACDEIGVPLAVTIDERTPTDGTVTIRDRDTRKQVRIGLRDVAK 562

Query: 437 YASH 440
           + + 
Sbjct: 563 FLAA 566


>gi|308070357|ref|YP_003871962.1| histidyl-tRNA synthetase 2 (histidine--tRNA ligase 2)
           [Paenibacillus polymyxa E681]
 gi|305859636|gb|ADM71424.1| Histidyl-tRNA synthetase 2 (Histidine--tRNA ligase 2)
           [Paenibacillus polymyxa E681]
          Length = 414

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 142/434 (32%), Gaps = 47/434 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q   G    LP   +    V    RE   R    E+  P  +  +L+V       D 
Sbjct: 1   MAFQKPTGTQDLLPGSVEKWQVVEEKAREISRRFNYREIRTPMFEQTNLFVRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  ++M   P     +   +  +           Y I   FR E RP+ G
Sbjct: 61  VEKEMYTFEDKGKRSMTLRPEGTAGVVRSYVENKLYGEPDVTKLYYIGPMFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPI 202
             R R+F      +F                 + R    LGLK + +       A S   
Sbjct: 120 --RQRQFHQFGIEAFGAVDPALDAEVIAFGYQFCR---ELGLKGVQVEINSVGNAASRAA 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F++      T+   ++   +     ++ D  D       +       + T   
Sbjct: 175 YRQHLVDFLMPIKDTLTKESQARIERNPLRVLDSKDDQDKFGGAPSILDSLDEESRTHFE 234

Query: 263 HNEKLFDSLPENKR---VSARGIEVGHIFYF---------------GTKYSLPMSATFKG 304
             ++  D++           RG++   +  F               G +Y    +     
Sbjct: 235 KVKQNLDAMGVEYTVNPRLVRGLDYYTLTAFEFKAEGIGAIDTIGGGGRY----NGLVGD 290

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G D       +GIG  R+   +I      K     +   P  I ++ +    +   + 
Sbjct: 291 LGGPDQPGI--GFGIGLERI--QLILEHQGVK----LNEAKPLDIYMVALGEAAET--EV 340

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++++ +L + G     D +G ++ +Q   AD        I+G   ++  ++ +K+  TG
Sbjct: 341 TKQLF-KLRQAGFSAERDYLGRKMKAQMKSADRFKARYTAILGEDELAQGEIALKNMETG 399

Query: 425 IREDMSLEEVINYA 438
            +  + L++++   
Sbjct: 400 EQRTVKLDQLVEEL 413


>gi|239637623|ref|ZP_04678595.1| glycyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596841|gb|EEQ79366.1| glycyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 463

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 131/367 (35%), Gaps = 74/367 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    LK + +           S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASQWLKDLNI-----------S 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D    ++    +                 +   I  ++   +     + +   
Sbjct: 257 EENMRLRDHDADELSHYSN-----------------ATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLKK-------------HSEHSGEDF------KYHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++  +G          + +  ++AP+K +++ +            KI+ +LS+  
Sbjct: 341 AFLCDAYSQEGVEGSKDERTVLKFHPALAPYKAAILPLSKK---LSSEAIKIFEQLSQS- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELEA 455

Query: 437 YASHRFS 443
           + + +  
Sbjct: 456 FLAEKVK 462


>gi|193216690|ref|YP_001999932.1| glycyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193002013|gb|ACF07228.1| glycyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 463

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 129/397 (32%), Gaps = 67/397 (16%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMI 105
              +  II+         +    T++  +L             M R        +   + 
Sbjct: 123 FQELETIIKSRVKEYDGAKCDWSTIRPFNL-------------MFRTEMGAISNSASQVY 169

Query: 106 YGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
             P   + +   F++ +++ R  LPF   QI   FR+E+ PR  + R+REF   +   F 
Sbjct: 170 LRPETAQGIFVNFKNVLRTTRAKLPFGIGQIGKSFRNEITPRDFIFRTREFEQMELEFFC 229

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           L  + +   Y             LGLK+  +R           HE   L+          
Sbjct: 230 L-EQDANKFYEYWINKCHSFVSSLGLKANNIRIRP--------HEKEELS-----HYSKG 275

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
              +++  P    +   I +  +        ++  S  + ++    +       +    +
Sbjct: 276 TSDIEYFFPFGWGELLGIANRGNFDLSQHMKFSQESLEYLQEDGSKVVPWVIEPS----I 331

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G                  G D K   + +                            ++
Sbjct: 332 GLDRLLLALLVDSYEVEDLGNDDKRTILHLNY--------------------------NI 365

Query: 345 APFKISLINIKAHDQVCRDACEKIYARL-SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           AP+++++  +            +IY  L  K    + +D+ G  IG ++   D +G P  
Sbjct: 366 APYQLAIFPLTK---ALAPKAREIYDELIDKSTIRLVYDESG-SIGKRYRRQDAIGTPFA 421

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           + V  + +    V I+ R T  +  +++ E++NY + 
Sbjct: 422 LTVDHESLETGTVTIRERDTMKQIRINISEIVNYLNQ 458


>gi|256964070|ref|ZP_05568241.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|307274105|ref|ZP_07555314.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|256954566|gb|EEU71198.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|306509230|gb|EFM78291.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
          Length = 423

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++A+ +   
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    E S     KM  +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFS-DAEHSYEELEKMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +  DF        + D         
Sbjct: 345 KMYREISSCSNCEDFQARRALIRYRDKTGHVQYAH 379


>gi|55794131|gb|AAV65958.1| histidyl-tRNA synthetase [Lactobacillus hilgardii]
          Length = 428

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 140/433 (32%), Gaps = 46/433 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
           +Q  KG    LP   +    V  I R+  N+ G   +  P  ++ +++        D   
Sbjct: 6   YQRPKGTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVE 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFG 148
           K+M    D+  + +   P         +  +       P     Y +   FR E RP+ G
Sbjct: 66  KQMYDFDDKGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYE-RPQSG 124

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      + +            +    L+ F +LG+  + +   +  +G   + 
Sbjct: 125 --RQRQFTQIGCEALNSESPQIDVE---VISEALQFFKQLGINDLKLTVNT--LGDKETR 177

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNE 265
           +    A     + +  +   D            + S +   ++  A   +  D    ++ 
Sbjct: 178 DAYHKALIDYLKPYYDQLSDDSKERMYKNPLRVLDSKDETDQKIVANAPSILDSLSDYSA 237

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQM 314
           K F+ + +         E+      G  Y           S      +    G   Y  +
Sbjct: 238 KYFEEVKKLLDKLNIKYEIDSDMVRGLDYYTQTIFEIMSASDVFGGGYVTVCGGGRYNGL 297

Query: 315 GS-----------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            S           YGIG  R++  V + + D      PD         +   + D    +
Sbjct: 298 ISQLGGPDEGGIGYGIGVERLLLLVQKENPDFTPKYGPD---------VFFASADDEGDE 348

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++ K G     +    ++GSQ   A         ++G K V + K E+    +
Sbjct: 349 LAFEVLDKIRKNGVSADKNYQDVKVGSQIKEAIRRKTRYYAVIGKKEVEEGKFELSKVDS 408

Query: 424 GIREDMSLEEVIN 436
              + +S++E  +
Sbjct: 409 DQTQTVSVKEFED 421


>gi|315026714|gb|EFT38646.1| seryl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 423

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 92/243 (37%), Gaps = 25/243 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R A+++  + +   G+  +  + +Y++L             + +  N  G  E+  P L 
Sbjct: 154 RGAKVSGSRFLYYKGLGARLERAVYNFL-------------LDQHVNEHGYTEVIPPYLV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++     +G++  + +++ ++A+ +   +   PT E  +T+ + + I   + LP  F  +
Sbjct: 201 NSKAMFGTGQFPKFKEDVFQVAESD---LTLIPTAEVPLTNYYNNEILDAQELPIYFTAL 257

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +   F    E S     KM  +   I  +LGL 
Sbjct: 258 SPSFRSEAGSAGRDTRGLIRLHQFHKVEMVRFS-DAEHSYEELEKMTNNAGDILEKLGLP 316

Query: 192 SIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
              +   +G +G   +     E  + A     ++    +  DF        + D      
Sbjct: 317 YRVITLSTGDMGFSAAKTYDLEVWIPAQKTYREISSCSNCEDFQARRALIRYRDKTGHVQ 376

Query: 248 IVE 250
              
Sbjct: 377 YAH 379


>gi|302206640|gb|ADL10982.1| Glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|308276883|gb|ADO26782.1| Glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 461

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 142/481 (29%), Gaps = 134/481 (27%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGK------ 91
           + + PLG +  +N+         Q R   + +    +    +W  SG   ++        
Sbjct: 34  WDYGPLGTELKENIKKQWWRTFVQGRADVVGLDSSIILPRQVWNASGHVATFTDPLVESL 93

Query: 92  --------------------------------------------EMLR--------LADR 99
                                                       +M            D 
Sbjct: 94  HTHKRYRADHLLEAYEAKHGHAPENGLADVPDPETGQPGSWTEPQMFSGLMKTFLGPVDN 153

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                   P   + +   F++ + + R  P F   Q+   FR+E+ P   + R+REF   
Sbjct: 154 EQGLHYLRPETAQGIFVNFKNVMTTARMKPPFGIAQVGKSFRNEITPGNFIFRTREFEQM 213

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +                                                 E+ V AD  +
Sbjct: 214 EI------------------------------------------------EYFVPADQAD 225

Query: 219 TQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +   +    +  F     N +      +        +      +       +   E   
Sbjct: 226 EKFREWVDACWDWFVDLGINPENMRQFDVPEEERAHYSKGTIDMEYKFGFQGNPWGELMG 285

Query: 277 VSARG-IEVG-HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           V+ R   ++G HI   G   S      F  A G+ +   +     G  R + A +  ++ 
Sbjct: 286 VANRTDYDLGCHIKESGEDLS-----YFDQATGERYVPWVIEPSFGLTRALMAFLVDAYC 340

Query: 335 GKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                           +     ++P K++++ +   D       E++ A+L K   +V +
Sbjct: 341 EDEAPNAKGGVDKRVVLKLDPRLSPVKVAVLPLSKKD-TLTPVAEEVAAKLRKFW-NVDY 398

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G  IG ++   D +G P  V V    + D+ V ++ R T  +E ++L+++ +Y + R
Sbjct: 399 DTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMSQERVALDQLESYLAAR 457

Query: 442 F 442
            
Sbjct: 458 L 458


>gi|268608254|ref|ZP_06141981.1| glycyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 468

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/374 (14%), Positives = 117/374 (31%), Gaps = 80/374 (21%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P T + +  +       + + +PF   Q+   FR+E+ P  
Sbjct: 151 MFKTFQGVTEDSKSELYLRPETAQGIFVNFANIQRTTRKKVPFGVAQVGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F   P      ++            LGLK   +R           
Sbjct: 211 FIFRVREFEQMELEFF-CKPGTDLEWFDYWRSYCKNFLLSLGLKEENIRLRD-------- 261

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            K+ + F   +              +             H    
Sbjct: 262 ---------------HDKEELCFYSKATTDFEYLFPFGWGELWGVADRTDYDLTQHINTS 306

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             SL                              F     + +   +    +G  R+  +
Sbjct: 307 GKSLEY----------------------------FDPETNEKYIPYVIEPSLGVERLFLS 338

Query: 328 VIESSHDGKGII-----------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           V+  ++D + ++                 +  ++APFK +++ +           E++Y 
Sbjct: 339 VVTEAYDEEELVSTDKNGNEKKEIRTVMHFHPALAPFKCAVLPLVKK---LTPKAEEVYE 395

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDM 429
            LSK    V +D+ G  IG ++   D +G P  + V    +  D+ V ++ R T  +  +
Sbjct: 396 MLSKK-FMVDFDEAG-TIGKRYRRQDEIGTPFCITVDFDTIEKDNCVTVRDRDTMEQVRV 453

Query: 430 SLEEVINYASHRFS 443
           SL+E+  +   + +
Sbjct: 454 SLDELEEFIEAKIA 467


>gi|282852108|ref|ZP_06261466.1| histidine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|282556868|gb|EFB62472.1| histidine--tRNA ligase [Lactobacillus gasseri 224-1]
          Length = 428

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 143/437 (32%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    + + V  I R    R    E+  P+ ++ +++  S     D   K
Sbjct: 4   QRPKGTVDILPAESGSWEKVETIARNFFKRANYREIRTPSFENYEVFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     ++  PF  Y I   FR E RP+ G 
Sbjct: 64  EMYDFNDKGGRHITLRPEGTAGVVRAYVENKLYGPDVVKPFNVYYIDNTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSNSPLADVETIMMG---HDLLAELGVKNYELHINTLGNAQVRKDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK   D     +     D +  +S    
Sbjct: 178 HDALVNYFTPLKDQLSEDSQRRLSMNPLRILDSKAEEDKQFLPDAPRIVDYLDEDSKKNF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            T          N  L D            + E         E       G +Y+     
Sbjct: 238 ETITDMLEQLGINYVLDDDLVRGLDYYTGVIFEFMVEDKNLWESATTILGGGRYNH---- 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
             +  DG +       +GIG  R++  + E +    + +GI            + NI   
Sbjct: 294 LVEEFDGPETPAV--GFGIGEERLMLVLKEQNPALFEDEGI---------DFFITNIGEG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            ++      +I   L K      +D   +++  QF  AD +     + +G+K + +  + 
Sbjct: 343 TEM---KAVEIARSLRKQDFKAQYDVDQKKLKQQFRKADRVHAKFVITLGAKELENGVLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SLE++
Sbjct: 400 IKRLADGKTLDLSLEDL 416


>gi|331007914|ref|ZP_08330984.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418274|gb|EGG92870.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 423

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 146/440 (33%), Gaps = 54/440 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        + + +    ++    E+  P +++ DL+  S G   D   K
Sbjct: 5   QAIRGMNDLLPQQSATWQYLESAVSSILDQYNYKEIRFPIMETTDLFKRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRN  ++   P            H   Y      +Y     FR E RP+ G  R
Sbjct: 65  EMYTFADRNGDSVTLRPEGTASCVRACEQHGLLYNQTQKLWYH-GPMFRYE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--------RAESG--- 200
            R+F      +F             + +   R++ +L +    +         A  G   
Sbjct: 121 LRQFHQIGVETFGFDGPDIDAE---LLLLTARLWKQLKINHAVVLEINSLGTPASRGRYK 177

Query: 201 --------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                   P+ G L  +      T   ++  SK+     + ++     D I   +     
Sbjct: 178 AALIDYLNPLKGQLDEDSQRRLSTNPLRILDSKNTDTQALLADAPQLHDFIEDEAKAHFV 237

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIF-----YFGTKYSLPMSATFKG- 304
                        K  D      +   RG++     +F       G + ++     + G 
Sbjct: 238 A-------LTDILKAADIPYRVNQRLVRGLDYYDYTVFEWVTDQLGAQGTVCAGGRYNGL 290

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-ISLINIKAHDQVCR 362
                          +G  R+V  ++E+ +     + PD+VA    I ++++        
Sbjct: 291 VEQLGGRPTAAVGLAMGVERLVL-LLETLN-----VLPDNVASTPDIYIVSVGDVMPYAL 344

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+   L        +   G    +Q   AD  G  + +I+G        + +K+  
Sbjct: 345 SVAEKLRDDLLDANICSHF--GGGSFKNQMKKADKSGANMALIIGEDEKQQQLLTVKYLR 402

Query: 423 TGI-REDMSLEEVINYASHR 441
           +G  ++ +++EE I    HR
Sbjct: 403 SGDPQKTITVEEFITLFKHR 422


>gi|16765842|ref|NP_461457.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161612720|ref|YP_001586685.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549458|ref|ZP_02343217.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167991830|ref|ZP_02572929.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232089|ref|ZP_02657147.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168466728|ref|ZP_02700582.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194470025|ref|ZP_03076009.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197263278|ref|ZP_03163352.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200387284|ref|ZP_03213896.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|224582941|ref|YP_002636739.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|20141626|sp|O52765|SYH_SALTY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082308|sp|A9N202|SYH_SALPB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782343|sp|C0PYN1|SYH_SALPC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|16421066|gb|AAL21416.1| histidine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161362084|gb|ABX65852.1| hypothetical protein SPAB_00419 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456389|gb|EDX45228.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195630851|gb|EDX49443.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197241533|gb|EDY24153.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199604382|gb|EDZ02927.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205325473|gb|EDZ13312.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329927|gb|EDZ16691.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333643|gb|EDZ20407.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|224467468|gb|ACN45298.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247718|emb|CBG25546.1| HisRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994639|gb|ACY89524.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159071|emb|CBW18585.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913509|dbj|BAJ37483.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222777|gb|EFX47848.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613733|gb|EFY10672.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619524|gb|EFY16400.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625029|gb|EFY21858.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629528|gb|EFY26304.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634041|gb|EFY30778.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635521|gb|EFY32232.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639803|gb|EFY36482.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644425|gb|EFY40966.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648570|gb|EFY45019.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655210|gb|EFY51519.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658257|gb|EFY54523.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664258|gb|EFY60455.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669425|gb|EFY65574.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673152|gb|EFY69258.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676544|gb|EFY72612.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683294|gb|EFY79308.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685820|gb|EFY81813.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323130850|gb|ADX18280.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194763|gb|EFZ79951.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199549|gb|EFZ84640.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204676|gb|EFZ89674.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208124|gb|EFZ93069.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210152|gb|EFZ95053.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217020|gb|EGA01742.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221818|gb|EGA06222.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225003|gb|EGA09258.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229292|gb|EGA13416.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235393|gb|EGA19477.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237421|gb|EGA21484.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245175|gb|EGA29176.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248878|gb|EGA32804.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253165|gb|EGA36997.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255399|gb|EGA39167.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263532|gb|EGA47059.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266353|gb|EGA49841.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269816|gb|EGA53266.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332989449|gb|AEF08432.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 424

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 146/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|315221549|ref|ZP_07863469.1| histidyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315189383|gb|EFU23078.1| histidyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 431

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 149/458 (32%), Gaps = 75/458 (16%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-- 83
           M R  M  Q  KG    LP        V    R+   +    E+  P  +  ++   S  
Sbjct: 1   MKRKAMKLQKPKGTQDILPQESVKWQYVEEFARKTFKKYHYAEIRTPLFEHYEVISRSVG 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLK 138
              D   KEM    D+ D+ +   P   E    + RS++++         P   Y +   
Sbjct: 61  DTTDIVTKEMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYMGSM 117

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FR E RP+ G  R REF       F      +      M     + F+ +G++ + ++  
Sbjct: 118 FRYE-RPQAG--RLREFHQIGVECFGSNNPATDVETIAMAA---QFFNEIGIQGVTLQLN 171

Query: 199 S------------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           S                   P+   LS +     +    +V  SK+  D           
Sbjct: 172 SLGNAESRAAYRQALIDYLTPLKDSLSKDSQRRLEENPLRVLDSKEKEDKLAVENAPSIL 231

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------- 290
           D +   S                  +             RG++     IF F        
Sbjct: 232 DYLDEESQTHFQAVRSML-------EALKIPYVINTNMVRGLDYYNHTIFEFTAAVAGNE 284

Query: 291 -----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                G +Y   + A F G +          +G+G  R++  +     + +G+  P    
Sbjct: 285 LTICAGGRY-DSLVAYFGGPE-----TAGFGFGMGVERLLLVL-----EKQGVALPLE-D 332

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
              + +  +    +   +   +I   L K G     D +  ++ +QF  AD     + + 
Sbjct: 333 SLDVYVAVLG---EGANNKALEIVQALRKQGFTAERDYLNRKLKAQFKSADTFSAKVLIT 389

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G   +  ++V +K+     RE+++++  +N     F 
Sbjct: 390 LGESEIESNQVTVKN--NHTREELTVD--LNQIQEDFQ 423


>gi|269126355|ref|YP_003299725.1| histidyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311313|gb|ACY97687.1| histidyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 421

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 130/431 (30%), Gaps = 37/431 (8%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG+  ++P   +AL  V     E+    G   + +   +   L+        D   
Sbjct: 5   FQAPKGVSEYVPPQAEALLAVRQAFAEQARLAGYGYVELAVFEDTQLFKRGVGESTDVVT 64

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM    DR  +++   P     +      +    + LP   +     FR E RP+ G  
Sbjct: 65  KEMYTFEDRGGRSITLRPEFTAGVLRAVLEYGLHKQGLPVKVWTTGPAFRAE-RPQKG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+F   D  +              +       +  LGL+ + +   S       P   
Sbjct: 122 RYRQFYQLDLEAIGSQDPQIDAETIAIA---WNWYQGLGLRQVRLLLNSLGCRECRPAYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               EF+   D  E      +      +  +  +    ++   ++               
Sbjct: 179 TRLQEFLRGLDLDEATRARVEINPLRVLDDKRPEVKAQLTDAPLMADHLCAACKAHHDKV 238

Query: 265 EKLFDSLPENKRVSARGI-----------EVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
             L   +        R +           E  H    G +  +     + G   D     
Sbjct: 239 RSLLADVGIAWTDEPRLVRGLDYYTRTTYEFEHP-LLGAQSGIGGGGRYDGLSEDIGGPP 297

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           +    +G+G  R + A+     +G  +  P     F + L       +        + A 
Sbjct: 298 LPGIGFGLGLDRTLLAL---EAEGVQLPVPSRCQVFGVPL------GETAEHKVFTLVAE 348

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G        G+ + S    AD  G    VI+G + ++    ++K   TG +  + L
Sbjct: 349 LRRAGIAADMAPAGKSLKSAMKSADRSGAAYAVIIGERDITAGSAQVKDLATGEQIAVPL 408

Query: 432 EEVINYASHRF 442
            ++      R 
Sbjct: 409 TDLTATLLERI 419


>gi|62181089|ref|YP_217506.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75505635|sp|Q57LI7|SYH_SALCH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|62128722|gb|AAX66425.1| histidine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715576|gb|EFZ07147.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 424

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 147/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++  S +  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDASALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|170078871|ref|YP_001735509.1| histidyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|229558736|sp|B1XJ88|SYH_SYNP2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169886540|gb|ACB00254.1| histidyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 426

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 130/410 (31%), Gaps = 43/410 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYG 107
              V A++R+   R    E+  P  +   L+    G   D   KEM    DR D+ +   
Sbjct: 21  WQQVEAVVRDCLGRAMYQEIRTPIFEQTSLFERGIGEATDVVSKEMYSFTDRGDRPITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +       +      +     FR E RP+ G  R R+F            
Sbjct: 81  PEGTAGAVRAYIERKLFAQGGVQRLWYTGPMFRYE-RPQAG--RQRQFHQVGVEVLGSAD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
             +      +      I  +LGLK++ ++  S                   P   DL  +
Sbjct: 138 PRADVEVMAI---ATEILQKLGLKNLSLQLNSVGNGGDRQRYREALVDYLTPFKADLDAD 194

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-EKLF 268
                +    ++  SKD     I        D +  +S         + T+   +     
Sbjct: 195 SQERLERNPLRILDSKDQKTQEIAQNAPSILDYLGDDSKKHFDQVQSSLTALGIDYVLNP 254

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVV 325
             +      +    E+      G + ++     + G     G      +G + IG  R+V
Sbjct: 255 CLVRGLDYYTHTAFEIQSSD-LGAQATVCGGGRYDGLVAELGGPETPAVG-WAIGLERLV 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +++   +  G      +           +  +    A   +  +L   G  V  D  G
Sbjct: 313 I-LLQQLGEASGPQLDFYL----------VSKGEQAEAAAVILAHKLRFAGFSVELDLSG 361

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              G QF  AD  G    +++G +   + +V++K   T  +E ++  +++
Sbjct: 362 SAFGKQFKRADRSGAIACLVLGDEEAVNQQVQLKWLQTKAQETLAQADLL 411


>gi|330686113|gb|EGG97734.1| glycine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 463

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 131/367 (35%), Gaps = 74/367 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    LK + +           S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASQWLKDLNI-----------S 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D    ++    +                 +   I  ++   +     + +   
Sbjct: 257 EENMRLRDHDADELSHYSN-----------------ATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLKK-------------HSEHSGEDF------KYHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++  +G          + +  ++AP+K +++ +            KI+ +LS+  
Sbjct: 341 AFLCDAYSQEGVEGSKDERTVLKFHPALAPYKAAILPLSKK---LSSEAIKIFEQLSQS- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  
Sbjct: 397 FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELEA 455

Query: 437 YASHRFS 443
           + + +  
Sbjct: 456 FLAEKVK 462


>gi|195977559|ref|YP_002122803.1| seryl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689799|sp|B4U1C3|SYS_STREM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|195974264|gb|ACG61790.1| seryl-tRNA synthetase SerS [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 425

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L   +
Sbjct: 165 FYKNLGARLERALYNFMLDEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTFEL---D 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTNFVLIPTAEVPLTNYYRGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKF-AKPETSYDELEKMTANAEHILQKLKLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|312143969|ref|YP_003995415.1| histidyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904620|gb|ADQ15061.1| histidyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 424

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 133/442 (30%), Gaps = 47/442 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDS 88
           M     +G    LP   K    +  +  +        E+  P  +  +L+    G   D 
Sbjct: 1   MKFNAPRGTNDILPPEIKKWQYIEDLTHKLFTNYNYQEIRTPIFEYTELFQRGIGEVTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D++ +++   P     +   F  +    +  P  +Y I   FR E RP+ G
Sbjct: 61  VEKEMYTFEDKSGRSITLRPEGTASVIRSFLENKIYGQAQPTKYYYIGPMFRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F      +              +    +R+   LGL+   +   S       P 
Sbjct: 120 --RFRQFHQLGVEAIASDDPALDAE---IISLGIRLMEELGLEDFELHLNSVGCKSCRPK 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                  F++       +  C K                  S  S+++            
Sbjct: 175 YVKKLKSFLIE----NKEDLCDKCRERIERNPLRVLDCKNQSCQSVIKGAPKITEHLCPE 230

Query: 263 HNEKL---------FDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKG------- 304
            +E            +       +  RG++      F          +  F G       
Sbjct: 231 CDEHFSEVQSFLDILNIEYNINPLLVRGLDYYTNTAFEIKDNALGAQNTVFGGGRYNGLA 290

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G      +G + +G  R++ ++     D KGI   +  A   + +  I       + 
Sbjct: 291 EEIGNRDIPGIG-FALGIERLLLSL-----DAKGIEVAEE-AGIDLYITVIGKK---AKR 340

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L         D +   +GSQ   AD +     +I+G   + ++   I++  +
Sbjct: 341 EAFRLLDILRNEDFKTEIDYLDRSVGSQMKSADRMNAEYTIIIGEDELENNSATIRNMKS 400

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G  E++ L  ++          
Sbjct: 401 GNEEEIKLSNLLEVMKQLVDKE 422


>gi|255025792|ref|ZP_05297778.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 425

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 143/436 (32%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    +         E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKNVXXXYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDSSIDVE---VISLAMEFFRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P  + +I  +   ++    
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLAL-----EKADIEIPAK-KPLDVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++   S+
Sbjct: 405 EQEAVSETTILEKLSN 420


>gi|168187059|ref|ZP_02621694.1| glycyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169295056|gb|EDS77189.1| glycyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 463

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 122/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D N +  +   T + +  +   +   S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDSNAEIYLRPETAQGIFVNFKNAQRSSRKKVPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      ++       +    LG                ++
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFHYWKNYCWKFLLDLG----------------MT 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +   D GE ++               + + +  S    +  +            +  
Sbjct: 258 EESLRFRDHGEEEL---------------SFYSNATSDIEFLFPFGWGELWGVADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
                E+                          T+      + +   +    +GA RV  
Sbjct: 303 LKKHMEHSGQ---------------------ELTYLDPTTNEKYVPYVIEPSLGADRVAL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +          +   +APFK +++ +        +    +YA+LSK   
Sbjct: 342 AFLVDAYDEEELENGDTRTVLHFHPVLAPFKAAILPLSKK---LSEKALDVYAKLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V ++ R    +  +S++E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTVRDRDNMTQIRLSIDELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 LEEKVQ 462


>gi|300858940|ref|YP_003783923.1| glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686394|gb|ADK29316.1| glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302331189|gb|ADL21383.1| Glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
          Length = 473

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 142/481 (29%), Gaps = 134/481 (27%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGK------ 91
           + + PLG +  +N+         Q R   + +    +    +W  SG   ++        
Sbjct: 46  WDYGPLGTELKENIKKQWWRTFVQGRADVVGLDSSIILPRQVWNASGHVATFTDPLVESL 105

Query: 92  --------------------------------------------EMLR--------LADR 99
                                                       +M            D 
Sbjct: 106 HTHKRYRADHLLEAYEAKHGHAPENGLADVPDPETGQPGSWTEPQMFSGLMKTFLGPVDN 165

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                   P   + +   F++ + + R  P F   Q+   FR+E+ P   + R+REF   
Sbjct: 166 EQGLHYLRPETAQGIFVNFKNVMTTARMKPPFGIAQVGKSFRNEITPGNFIFRTREFEQM 225

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +                                                 E+ V AD  +
Sbjct: 226 EI------------------------------------------------EYFVPADQAD 237

Query: 219 TQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +   +    +  F     N +      +        +      +       +   E   
Sbjct: 238 EKFREWVDACWDWFVDLGINPENMRQFDVPEEERAHYSKGTIDMEYKFGFQGNPWGELMG 297

Query: 277 VSARG-IEVG-HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           V+ R   ++G HI   G   S      F  A G+ +   +     G  R + A +  ++ 
Sbjct: 298 VANRTDYDLGCHIKESGEDLS-----YFDQATGERYVPWVIEPSFGLTRALMAFLVDAYC 352

Query: 335 GKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                           +     ++P K++++ +   D       E++ A+L K   +V +
Sbjct: 353 EDEAPNAKGGVDKRVVLKLDPRLSPVKVAVLPLSKKD-TLTPVAEEVAAKLRKFW-NVDY 410

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G  IG ++   D +G P  V V    + D+ V ++ R T  +E ++L+++ +Y + R
Sbjct: 411 DTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMSQERVALDQLESYLAAR 469

Query: 442 F 442
            
Sbjct: 470 L 470


>gi|311114395|ref|YP_003985616.1| glycine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310945889|gb|ADP38593.1| glycine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 506

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 80/529 (15%), Positives = 148/529 (27%), Gaps = 149/529 (28%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRY 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRY-------------------------------D 87
              T    + +    +  + +WV SG                                 D
Sbjct: 54  MVTTRGDVVGVDTSVILPSQVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGD 113

Query: 88  SYGKE------------------------MLRL-----ADRNDKAMIYGPTHEEVMTDIF 118
              +                         MLR       D N    +   T + +  D  
Sbjct: 114 KMPENGLKDIACPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVDFK 173

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                + +  PF    I   FR+E+ P   + R+REF   +   F               
Sbjct: 174 NVMTATRQKPPFGIANIGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------ 221

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                                   G D +            Q +       +       +
Sbjct: 222 ------------------------GTDEAW----------HQYWIDTRVNWYVDLGVKPE 247

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              +           +      +           E + ++ R           T Y L  
Sbjct: 248 NLRMYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANR-----------TDYDLSA 296

Query: 299 SATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------------- 337
            A   G D        G+ +   +     G  R + A +  ++D                
Sbjct: 297 HAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGVDKRTV 356

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +     +AP K +++ +    ++     + + + L +    + +D+ G  IG ++   D 
Sbjct: 357 LRLDPRLAPVKAAVLPLSKKPELQ-AVAQDLASDLRQHDWVIDYDESGA-IGRRYRREDE 414

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G PL V V    + D  V I+ R T  +E +SL++V +Y + R +  R
Sbjct: 415 IGTPLCVTVDFDTLEDHAVTIRERDTMQQERVSLDKVADYVASRINEKR 463


>gi|224499819|ref|ZP_03668168.1| histidyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 425

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    +         E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDSSIDVE---VISLAMEFFRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLAL-----EKADIEIPAK-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++   S+
Sbjct: 405 EQEAVSETTILEKLSN 420


>gi|197303356|ref|ZP_03168396.1| hypothetical protein RUMLAC_02079 [Ruminococcus lactaris ATCC
           29176]
 gi|197297640|gb|EDY32200.1| hypothetical protein RUMLAC_02079 [Ruminococcus lactaris ATCC
           29176]
          Length = 478

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 115/368 (31%), Gaps = 74/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + LPF   QI   FR+E+ P  
Sbjct: 167 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEITPGN 226

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P+     ++      L     LGLK                
Sbjct: 227 FTFRTREFEQMELEFF-CKPDTDLEWFDYWKNFCLNWLSSLGLK---------------- 269

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                     E +V       +       + +    +    +  +            +  
Sbjct: 270 ----------EDEVRYRDHDKEE-----LSFYSKATTDVEFLFPFGWGELWGIADRTDYD 314

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                             F     + +   +    +GA R+V A
Sbjct: 315 LTQHQNVSGQDL--------------------TYFDDETKEKYIPYVIEPSLGADRMVLA 354

Query: 328 VIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            + S++D + I             +  ++AP KI ++ +        +  EK+Y  L K 
Sbjct: 355 FLCSAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKVYTELCKY 411

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++ 
Sbjct: 412 -YNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERVKIEDLK 469

Query: 436 NYASHRFS 443
            Y   +F 
Sbjct: 470 AYFEKKFE 477


>gi|289434800|ref|YP_003464672.1| hypothetical protein lse_1435 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171044|emb|CBH27586.1| hisS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 427

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 141/442 (31%), Gaps = 46/442 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        + A            E+  P  +  +L+        D   K
Sbjct: 2   QLPRGTRDILPEEVTKWHFLEAAFAAVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSK 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVM 150
           EM    D+  +++   P     +   F  H        P   Y  +  FR E RP+ G  
Sbjct: 62  EMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGAVSQPIKMYYNEPMFRYE-RPQGG-- 118

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS--- 207
           R R+F      +              +    +  F R+GL++I +   S  +G   S   
Sbjct: 119 RQRQFTQMGIEAIGSDDPAIDVE---VISLAMEFFKRIGLRNIKLVINS--LGDKESRLK 173

Query: 208 -------------HEFIVLAD----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-V 249
                         EF             ++   K   D P+        D ++  S+  
Sbjct: 174 HREALVSHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQTAPSILDYLNEESVAY 233

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG---A 305
                 Y    ++  E     +      +    E+      FG K +L     + G    
Sbjct: 234 FNQVQTYLNALEISFEIDPTMVRGLDYYNHTTFEIMSEEEGFGAKTTLCGGGRYHGLVKE 293

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +GIG  R++ A+     D K    P    P ++ +I  +   ++     
Sbjct: 294 FGGPDTPGIG-FGIGVERILLAL--EKADVK---IPAK-KPLEVYVITAQPEAEL---KA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +   L K G     D +  ++ +Q   A+       +I+G + +     ++K+  TG 
Sbjct: 344 VTLVNELRKNGISAEKDYLKRKLKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGE 403

Query: 426 REDMSLEEVINYASHRFSNNRP 447
           +E +  + +      + +N + 
Sbjct: 404 QETVFEDTLETVLIEKLTNTKE 425


>gi|205360461|ref|ZP_02683413.2| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349561|gb|EDZ36192.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 445

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 146/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 27  QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 86

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 87  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 142

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 143 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLEARANY 198

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++    +  +    +    
Sbjct: 199 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHF 258

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 259 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 318

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 319 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 367

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 368 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 416

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 417 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 444


>gi|127512223|ref|YP_001093420.1| histidyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166228614|sp|A3QCG3|SYH_SHELP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|126637518|gb|ABO23161.1| histidyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 423

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 155/435 (35%), Gaps = 43/435 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        + A++R+     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKLEAVLRDTVAAYGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRN   +   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADRNGDLLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAES------GPIGG 204
            R+F       + +           M     R++ +LG+   + +   +           
Sbjct: 122 YRQFNQFGVEVYGIASADIDAEVLMMS---HRLWQKLGISEHVKLELNTLGDAQERAAYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D   EF+   +    +    + + +    + S+N D   ++     +  +    +     
Sbjct: 179 DALVEFLEQHEEKLDEDSQRRMYSNPLRVLDSKNPDVQALLGDAPALMDYLGEESRGHFA 238

Query: 263 HNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKGADGKD--H 310
           H  +L +++           RG++     +F       G + ++     + G  G+    
Sbjct: 239 HLCELLEAVGIQYEINPRLVRGLDYYNRTVFEWVTDSLGAQGTVLAGGRYDGLVGQLGGK 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQVCRDACEKIY 369
                 + +G  R+V  +       + +   D V+ P  + +  +      CR A  K+ 
Sbjct: 299 DTPAVGFAMGLERIVLML-------ETLALTDDVSGPVDVYVTAMGDD---CRVAAIKVA 348

Query: 370 ARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIRE 427
            +L +V G  V     G     Q   AD  G  L +++G   +++ +V +K+ R    +E
Sbjct: 349 QQLREVDGLKVMSHCGGGNFKKQMKRADKSGAKLAIVIGETELANGQVALKYLREEKEQE 408

Query: 428 DMSLEEVINYASHRF 442
            ++ + +  Y +   
Sbjct: 409 LVAQDSLAAYVAELI 423


>gi|308234686|ref|ZP_07665423.1| glycyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
          Length = 506

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 80/529 (15%), Positives = 147/529 (27%), Gaps = 149/529 (28%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRY 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRY-------------------------------D 87
              T    + +    +  + +WV SG                                 D
Sbjct: 54  MVTTRGDVVGVDTSVILPSQVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGD 113

Query: 88  SYGKE------------------------MLRL-----ADRNDKAMIYGPTHEEVMTDIF 118
              +                         MLR       D N    +   T + +  D  
Sbjct: 114 KMPENGLKDIACPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVDFK 173

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                + +  PF    I   FR+E+ P   + R+REF   +   F               
Sbjct: 174 NVMTATRQKPPFGIANIGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------ 221

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                                   G D +            Q +       +       +
Sbjct: 222 ------------------------GTDEAW----------HQYWIDTRVNWYVDLGVKPE 247

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              +           +      +           E + ++ R             Y L  
Sbjct: 248 NLRMYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANRT-----------DYDLSA 296

Query: 299 SATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------------- 337
            A   G D        G+ +   +     G  R + A +  ++D                
Sbjct: 297 HAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGVDKRTV 356

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +     +AP K +++ +    ++     + + A L +    + +D+ G  IG ++   D 
Sbjct: 357 LRLDPRLAPVKAAVLPLSKKPELQ-AVAQDLAADLRQHDWVIDYDESGA-IGRRYRREDE 414

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G PL V V    + D  V I+ R T  +E +SL++V +Y + R +  R
Sbjct: 415 IGTPLCVTVDFDTLEDHAVTIRERDTMQQERVSLDKVADYVASRINEKR 463


>gi|241895559|ref|ZP_04782855.1| histidyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241871137|gb|EER74888.1| histidyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 435

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 144/447 (32%), Gaps = 56/447 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           + Q  KG    LP        V    R   +     E+  P  ++ D++  S     D  
Sbjct: 5   LFQKPKGTADLLPNESLKWHYVEETARLLFSDYQYAEVRTPIFENFDIFARSAGDTSDVV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRF 147
            KEM    D+ D+ +   P     +   F  +         P+  + I   FR E RP+ 
Sbjct: 65  TKEMYDFKDKGDRHIALRPEGTAGVVRAFVENKLFGPEHAKPYKLFYIGPMFRYE-RPQA 123

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------- 199
           G  R R+F      +              M V +   F  LG+ ++ ++  S        
Sbjct: 124 G--RMRQFHQIGVEALGSESPALDAEVIAMAVDF---FQTLGIANLKVKVNSLGDKESRE 178

Query: 200 ----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                      P   +LSH+     +    +V  SKD  D  I +      D +S ++  
Sbjct: 179 NYRQALIDFLKPHFEELSHDSQERLEKNPLRVLDSKDAKDQEIVANAPSILDYLSDDAQQ 238

Query: 250 EQWTAPYA-------ATSDVHNEKLFDSLPE-NKRVSARGIEVGHIFYF---GTKYSLPM 298
                             D    +  D        V  +   +GH +     G +Y+  +
Sbjct: 239 HWLKVQQYLDALGIDYEVDATVVRGLDYYNHTIFEVMTKAKALGHGWSTITGGGRYN-GL 297

Query: 299 SATFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            + F G +       M   G G  +  +  ++ES +       PD      I + N    
Sbjct: 298 VSEFGGPE-------MAGVGFGIGLERLMLLLESENAP----LPDENK-LDIYVANQGQD 345

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +   A  ++   +   G     D    ++ +QF  A+ L     + +G + +++    
Sbjct: 346 TDI---AAMQMVQAIRSFGYSADRDYEDRKLKAQFKTANRLNARYMITIGERELAEQSAN 402

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           +K+  TG    + L E+         +
Sbjct: 403 LKNMQTGKETAVKLAELYTNLPEYVES 429


>gi|325290214|ref|YP_004266395.1| histidyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965615|gb|ADY56394.1| histidyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 422

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 133/432 (30%), Gaps = 37/432 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    +P   +    +   IR+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QRPKGTQDIIPGIIEKWHVLEGQIRKICEEYGFQEIRTPIFEATELFQRGVGETTDIVNK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+ +++M   P     +   F  +       P   Y     FR E        R
Sbjct: 64  EMYTFQDKGNRSMTLRPEGTAAVCRAFVENKLYALPQPVKLYYRGPMFRYENTQA---GR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEF 210
            R+F    A  F             +      +F+RLGLK + ++  S G       H+ 
Sbjct: 121 FRQFSQFGAEVFGGEDPLVDAE---VIQLVWELFNRLGLKDLVIQINSVGCPVCRAEHKS 177

Query: 211 IVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            + A  +  + ++           P    D         I    T      +D  +    
Sbjct: 178 KLQAFLEPKKEELCADCQSRFDRNPLRILDCKSKHCKELIKGAPTILEMLCADCRDHFTK 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY----------- 317
                     A  ++ G +               +    +      G Y           
Sbjct: 238 LQEYLEAVGIAYVVDAGMVRGLDYYRKTAFEVLVREIGAQSAICGGGRYDGLVEEIGGPS 297

Query: 318 ------GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                  +G  RV++A+     D         +A  +   + I A  +  R    K+ + 
Sbjct: 298 TPGIGFAMGIERVISALESQKID---------IAAEQAESVTIIALGEAARLESFKLVSV 348

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G   F D +G  + SQ   AD  G  + VI+G   ++     ++   TG + ++ L
Sbjct: 349 LRKRGIKSFLDVLGRNMKSQMKAADRAGSKIAVIIGEDELARKTAVLRDMKTGGQAEIPL 408

Query: 432 EEVINYASHRFS 443
           + +       F 
Sbjct: 409 DLLAEKIEELFK 420


>gi|319940132|ref|ZP_08014486.1| histidyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319810846|gb|EFW07173.1| histidyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 426

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 138/443 (31%), Gaps = 75/443 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESVKWQYVEEFARKTFKKYHYAEIRTPLFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M     + F+ +G++ + ++  S       
Sbjct: 120 AG--RLREFHQIGVECFGSNNPATDVETIAMAA---QFFNEIGIQGVTLQLNSLGNAESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKDSLSKDSQRRLEENPLRVLDSKEKEDKLAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFQAVRSML-------EALGIPYIINTNMVRGLDYYNHTIFEFTADVAGNELTICAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G++ P       + +  
Sbjct: 288 Y-DSLVAYFGGPE-----TAGFGFGMGVERLLLVL-----EKQGVVLPLE-DSLDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +        +   +I   L K G     D  +   +   + A A        + +G   +
Sbjct: 336 LGDG---ANNKALEIVQALRKQGFTAERDYLNRKLKAQFKSADAFSAKV--LITLGESEI 390

Query: 412 SDSKVEIKHRLTGIREDMSLEEV 434
             ++V IK+  T     +SL ++
Sbjct: 391 ESNQVTIKNNQTREELTVSLNQI 413


>gi|254444041|ref|ZP_05057517.1| glycyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198258349|gb|EDY82657.1| glycyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 502

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 117/365 (32%), Gaps = 70/365 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M          N       P   + +   +++ + + R  +PF   QI   FR+E+ PR 
Sbjct: 192 MFETKVGALSDNSATAYLRPETAQGIFANYKNVVDTGRVKIPFGIAQIGKAFRNEITPRN 251

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + RSREF   +   F         ++             +GL           + G   
Sbjct: 252 FIFRSREFEQMEIEYFISPDVDWSEAHQDWIKYCWNWLISIGLPE--------EMLGKDV 303

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE +                                +   I  ++         +     
Sbjct: 304 HEKLA---------------------------HYAKACTDITFKFPFGEQELWGIAARGD 336

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD     +  S + +E+                 F  A  K     +    +G  R+  A
Sbjct: 337 FDLSQHQE-HSGKSMEI-----------------FDEASKKKFVPHVIEPSLGVDRLFLA 378

Query: 328 VIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           ++ +++            + +   +AP+K++++ +  +     +  EK+Y +L +   +V
Sbjct: 379 ILGAAYTEDEVGGEKRSLMKFHPRIAPYKVAVLPLVKNKPELVEIAEKLYKKLQR-RYNV 437

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSK--FVSDSKVEIKHRLTGIREDMSLEEVINY 437
           FWD  G  IG ++   D +G P  V V             ++ R T  +  ++  E++ +
Sbjct: 438 FWDQSGA-IGRRYRRQDEIGTPWCVTVDFDTIEKEGQTFTLRDRDTTEQRRVNEAELLAF 496

Query: 438 ASHRF 442
              + 
Sbjct: 497 LDEQL 501


>gi|161527575|ref|YP_001581401.1| glycyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|160338876|gb|ABX11963.1| glycyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 485

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 129/365 (35%), Gaps = 40/365 (10%)

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           M R+      ++A +   T + +  D  R +      LP    Q+   FR+E+ PR  ++
Sbjct: 145 MFRVGIGPEEEEAYLRPETCQSIFVDFPRLYKTMRGKLPLGIAQVGKSFRNEIAPRQSLL 204

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REF   +   F   P                 F  +    I ++ +S P+        
Sbjct: 205 RLREFYQAEIEVF-CNPSKLDEVEK---------FTEVQDTVIRVQTDSEPV-------E 247

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +   +  E+    +K    +      T+F +   ++    ++          + E  FD 
Sbjct: 248 MTCKEAIESGTVPNKFVAYYL--GILTEFYEKTGIDISKSRFRKLGEKEKAFYAEVAFDF 305

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-----DGKDHY-VQMGSYGIGAMRV 324
             E        +   +     + Y L   A          DG D     +    +G  R 
Sbjct: 306 EVETTIGWLELVACNYR----SDYDLSSHANKSKEKFEIMDGDDKVLPHVFEISMGIDRS 361

Query: 325 VAAVIESS------HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +  ++E S      H+   +     +AP  + ++++   D   ++  ++IY  + +   D
Sbjct: 362 LYTILEHSLKDDKEHERIVLSLKPYLAPTHVGILSLVKKD-GLKEKTDEIYLSIKRK-FD 419

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            F D  G  IG ++   D +G P  V V  + + D  V I+ R +  +  + + ++ +  
Sbjct: 420 AFLDHSGA-IGRRYRRLDEIGAPFAVTVDHQTLEDDTVTIRKRDSMEQSRVKISDMDSIL 478

Query: 439 SHRFS 443
               S
Sbjct: 479 LESVS 483



 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 9/156 (5%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + P G    +    + R E   R G +E+    + S  ++  SG   ++   +++
Sbjct: 28  AGFWEYGPTGVGLKNKFLELWRRELIRRDGMLEIDGSQIMSKSVFEASGHLGNFADPIIK 87

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
               N          E    +I  S      +   +   I        + +    +++ F
Sbjct: 88  CTKCNSTFRADRTIAELTQIEIPESADLEEFDNAISQNNI-----KCPKCKGDFDKTKNF 142

Query: 156 LMKDAYSFDLTPEGSK---HSYNKMFVSYLRIFHRL 188
            M          E +     +   +FV + R++  +
Sbjct: 143 NMMFRVGIGPEEEEAYLRPETCQSIFVDFPRLYKTM 178


>gi|104773942|ref|YP_618922.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|123251924|sp|Q1GAG8|SYH_LACDA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|103423023|emb|CAI97709.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125611|gb|ADY84941.1| Histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 428

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 151/443 (34%), Gaps = 66/443 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      + V    R+   R    E+  P+ ++ +L+  S     D   K
Sbjct: 4   QRPKGTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     +   PF  Y I   +R E RP+ G 
Sbjct: 64  EMYDFEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +        +    +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSNGYLADVET---ILLGHDLLAELGVKNYELHINTLGDSEVRQAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK   D    SE     D +   S    
Sbjct: 178 HDALVDYFTPVKDQLSEDSQRRLGKNPLRILDSKAEEDQQFLSEAPKIRDYLDEES---- 233

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF----GTKYSLPMSATFKGA 305
                     + +               RG++   G IF F     T ++ P  +T  G 
Sbjct: 234 ---KENFNKILASLDKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASP--STVLGG 288

Query: 306 DGKDHYVQMGS--------YGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINI 354
              +H V+  S        +GIG  R++  + + +    + +GI            + NI
Sbjct: 289 GRYNHLVEEFSGPETPAVGFGIGEERLMLVLSKQNPEMFEDQGI---------DFFITNI 339

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                +      ++  +L  +G    +D   +++ +QF  AD +G    V +G+K +++ 
Sbjct: 340 GEGTDI---KAVEVARQLRSLGFSAQYDVDQKKLKAQFRKADRVGARYVVTLGAKELAEG 396

Query: 415 KVEIKHRLTGIREDMSLEEVINY 437
           K+ +K    G +  +   ++ + 
Sbjct: 397 KLTVKRLSDGQQFSLEFTDLEDK 419


>gi|15828922|ref|NP_326282.1| glycyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|14089865|emb|CAC13624.1| GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) [Mycoplasma
           pulmonis]
          Length = 453

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 63/487 (12%), Positives = 140/487 (28%), Gaps = 139/487 (28%)

Query: 30  GMIHQHSK---GI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWV 81
           G I Q S+   G+   + + P+G      +    R+     +  ++E+    L + ++W 
Sbjct: 20  GFIFQGSEIYGGLANTWDYGPVGFLLKQKIEEFWRKFFILKQDNSVEIDSKILMNPNVWK 79

Query: 82  ESGRY-------------------DSYGKEMLR--------------LADRNDKAM---- 104
            SG                     D   +E                     + K      
Sbjct: 80  ASGHVSNFSDPLIENKVNGKRYRADKIIEENFPEVNVQSMSEKEIHAFIVEHVKEYENSK 139

Query: 105 ---------------------------IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQ 136
                                         P   + +   F++ ++S R  LP    Q+ 
Sbjct: 140 TSWSEIRKFQLMFQTSQGVVEDSKNLVYLRPETAQGIFINFKNILRSTRAKLPLAVGQVG 199

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ P   + R+REF   +   F L PE ++  Y K           LG+    +R
Sbjct: 200 KSFRNEVTPGNFIFRTREFEQMELEVFCL-PEEAEEIYQKYINLCWEFLLELGINKNSIR 258

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                                 E   +            +    
Sbjct: 259 -------------------------------KRIHQKEELAHYSKGTCDYEFNFPFGWGE 287

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMG 315
                   +    +     +                        ++    D +     + 
Sbjct: 288 LLGIANRGDFDLKNHSHFSQE---------------------DLSYLNPLDNQRIIPYVI 326

Query: 316 SYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEK 367
              IG  R++ A++  ++  +         +     +AP++ +++ +        +  ++
Sbjct: 327 EPSIGLDRLMLALLCDAYHEESVENETRVVLKLDKKIAPYRFAVLPLVKK---LSEKAKE 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L  +   V +D+ G  IG ++   D +G    + +  + + D    I++R +  ++
Sbjct: 384 LYKNLVDLNLMVSYDESG-SIGKRYRRQDAIGTYECITIDYQSLEDDSFTIRNRDSMEQK 442

Query: 428 DMSLEEV 434
            +S EE+
Sbjct: 443 RLSFEEL 449


>gi|322515836|ref|ZP_08068780.1| histidine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322125722|gb|EFX97044.1| histidine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 426

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 133/432 (30%), Gaps = 53/432 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPADSAKWQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M     ++F+ LG+K + +   S       
Sbjct: 120 AG--RLREFHQLGVECFGSKNPATDVETIAM---TYQLFNTLGIKDVTLHLNSLGNTESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 175 LAYRQALIDYLTPMRESLSKDSQRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGAD 306
                               +          RG++     IF F T           G  
Sbjct: 235 AYFDEVRTML-------DSLNIPYVIDTNMVRGLDYYNHTIFEFVTTIDKSELTICAG-- 285

Query: 307 GKDHYVQMGSYGIGA----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+   +     G         +    +    D +GI  P   +   + +  + +      
Sbjct: 286 GRYDSLVEYFGGPETAGFGFGLGLERLLLVLDKQGIELPVEES-LDVYIAVLGSG---AN 341

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   +   G     D +G +I +QF  AD       + +G   V   +V +K+  
Sbjct: 342 GKALELVQAIRYQGFKAERDYLGRKIKAQFKSADTFKAKTVITLGESEVESGQVNVKNNA 401

Query: 423 TGIREDMSLEEV 434
           T     +S EE+
Sbjct: 402 TREEVTVSFEEL 413


>gi|161502324|ref|YP_001569436.1| histidyl-tRNA synthetase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189082307|sp|A9MHL6|SYH_SALAR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160863671|gb|ABX20294.1| hypothetical protein SARI_00357 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 424

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 148/438 (33%), Gaps = 49/438 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + + ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIESTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   + +  + A  +    A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIASPVVDIYLVAAGTETQS-AAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +  RL     DV         G    QFA AD  G  + +++G   V++  V +K   +G
Sbjct: 347 LAERLRDEMPDVKL-ITNHGGGNFKKQFARADKWGARIALVLGESEVANGTVVVKDLRSG 405

Query: 425 IREDMSLEEVINYASHRF 442
            +  ++ + V  +     
Sbjct: 406 EQTAVAQDSVAAHLRTLL 423


>gi|330723942|gb|AEC46312.1| glycyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 458

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 124/373 (33%), Gaps = 72/373 (19%)

Query: 85  RYDSYGK--EML-----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           R++   +   M       + D+  K  +   T + +  +           LPF   QI  
Sbjct: 139 RWEEIKQFNLMFETQQGVVEDKKSKIFLRPETAQGIFINFKNIQRSMRLKLPFGIGQIGK 198

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR+E+ P   + R+REF   +   F   PE +    N++F  YL          + +  
Sbjct: 199 SFRNEITPGNFIFRTREFEQMELEIFCH-PEQA----NQIFDDYLNKIQDFLFNELKI-- 251

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  +   +      +   +    DI  L           A
Sbjct: 252 --------------------NKDLVRVRHHKQEELAHYSLATSDIEFLFLFGWGELIGLA 291

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             SD   +    +  E                    Y  P +        +  +  +   
Sbjct: 292 NRSDFDLKAHSAASGEK-----------------LDYLDPFT-------NQKFFPYIIEP 327

Query: 318 GIGAMRVVAAVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +G  R++ AV+ + +  +           +  P S++PFK++++ +            +
Sbjct: 328 SMGVDRLLLAVLTNFYKEEKLEENEEKRSLLALPYSLSPFKVAILPLVKK---LSPKALE 384

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L K      +D+    IG ++ + D +G    + V  + + D+ + I+ R +  + 
Sbjct: 385 IYNLLLKNSISATFDE-NNSIGKRYRIQDAIGTYFSITVDYQSLEDNTITIRERDSMKQS 443

Query: 428 DMSLEEVINYASH 440
            +++++++N+   
Sbjct: 444 RIAIDQLLNFLEK 456


>gi|283769575|ref|ZP_06342471.1| glycine--tRNA ligase [Bulleidia extructa W1219]
 gi|283103843|gb|EFC05229.1| glycine--tRNA ligase [Bulleidia extructa W1219]
          Length = 460

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 72/454 (15%), Positives = 147/454 (32%), Gaps = 48/454 (10%)

Query: 28  RTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADL 79
            TG + Q S+   G+   + + P G    D +    +++  Q     +E+    L +  +
Sbjct: 16  ETGFVFQGSEIYGGLSNTWDFGPNGVLLKDAIKRAWQKKFIQEDANNVELQAAILMNPKV 75

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTH--EEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W  SG    +      L D  +    +   H  EE           S   +     + Q+
Sbjct: 76  WQASGHLSGFSD---PLMDCKNCKTRHRADHLIEEATNGEVSPEGWSNEEMENYIREHQM 132

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSI 193
              +     F  +R    + K         + +      +   MFV +  I  R   K +
Sbjct: 133 ACPECGSHDFTPIRQFNLMFKTFQGILEDSKNTIYLRPETAQGMFVQFKNI-QRAYRKKL 191

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
           P     G IG    +E         T+ F   +   F  P E+  +        +    +
Sbjct: 192 PF--GIGQIGKSFRNEITPGNFIFRTREFEQMEMEYFVKPGEDDQWFSYWRHFCMDWILS 249

Query: 254 ---APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKGAD 306
                       H ++      +           G    +G    T Y L       G D
Sbjct: 250 LGGHAENLRFRDHAKEELSFYSKATTDIEYQFPWGWGELWGIANRTNYDLGQHEKASGKD 309

Query: 307 --------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKI 349
                    + +   +    +G  R+       ++D + +          +   +AP K+
Sbjct: 310 LTYLDPITNEKYLPYVIEPAVGVERLFFMFFTDAYDEEELENGDTRVVMRFSPVLAPVKV 369

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +++ ++A   +  +  E++   L      V  D  G  IG ++   D +G P  + +  +
Sbjct: 370 AVLPLRAK--LHGEKAEEV-RHLFAKHFAVQSDGSG-SIGKRYRRQDEIGTPFCITIDDE 425

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + ++ V +++R +  +E MS+EE +        
Sbjct: 426 SLENNMVTLRYRDSMAQERMSVEEALQKVQKEIE 459


>gi|2896164|gb|AAC03121.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 424

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 146/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTYL 423


>gi|325662226|ref|ZP_08150841.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471478|gb|EGC74699.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 462

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 123/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y + F                      
Sbjct: 214 FTFRTREFEQMELEFFCEPGTDLE------WFAYWKKFC--------------------- 246

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L+  G  +    +  +    P E   +    S    +  +            +  
Sbjct: 247 --LDWLSSLGLKE---EEIRVRDHSPEELCFYSKATSDVEFLFPFGWGELWGIADRTDYD 301

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E  +                        T+   + K+ Y   +    +GA R+V 
Sbjct: 302 LSQHQEVSKQ---------------------DLTYFDDEKKEKYIPYVIEPSLGADRMVL 340

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A + S++D + +          +  ++AP KI ++ +        +  EK++A LSK   
Sbjct: 341 AFLCSAYDEEELEGGDTRTVMHFHPALAPIKIGVLPLSKK---LNEGAEKVFAELSKT-Y 396

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +DD G  IG ++   D +G P  V    +   D  V ++ R T  +E + +E++  Y
Sbjct: 397 NCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFESEEDGAVTVRDRDTMEQERIKIEDLKAY 455

Query: 438 ASHRFS 443
              +F 
Sbjct: 456 FEKKFE 461


>gi|319440593|ref|ZP_07989749.1| glycyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 460

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 142/450 (31%), Gaps = 70/450 (15%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +Q   +W  SG    +     E L
Sbjct: 33  WDYGPLGVELKENIKRQWWRHMVTSRKDVVGVDTSVIQPRQVWEASGHVKVFTDPLVESL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI------QLKFRDELRPRFG 148
               R     +     E+                P     I      Q     E +   G
Sbjct: 93  YTHKRYRADHLLEAYEEKHG-----------HEAPNGLADINDPDTGQPGKWTEPKAFSG 141

Query: 149 VMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           +M++    + D      L PE ++     +F+++  +   +G             G    
Sbjct: 142 LMKTYLGPVDDKEGLHYLRPETAQ----GIFINFKNV---MGASRSKPPFGIANTGKSFR 194

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E         T+ F   +   F  P E+ ++      +             +    E  
Sbjct: 195 NEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQKWIDDRYNWYVNLGIDPENLRLFEH- 253

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD-------- 306
                +    S R ++V + F F              T Y L       G D        
Sbjct: 254 --PQEKLSHYSKRTVDVEYAFGFTGSKWGELEGIANRTDYDLKTHMEHSGEDLSFFDQAT 311

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLIN 353
           G+     +     G  R + A +  ++                 +     ++P K++++ 
Sbjct: 312 GERWIPYVIEPAAGLGRAMMAFLVDAYSEDEAPNTKGGVDKRVVLRLDRRLSPVKVAVLP 371

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           + +  +      EKI   L  +  +V +D  G  IG ++   D +G P  V V    + D
Sbjct: 372 L-SKKETLTPTAEKIADDLRALW-NVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLED 428

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + V ++ R T  +E +SL+++ +Y +   +
Sbjct: 429 NAVTVRERDTMNQERVSLDKLQSYLAAELA 458


>gi|262283662|ref|ZP_06061427.1| histidyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262260719|gb|EEY79420.1| histidyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 426

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 139/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEEFARETFRKYNYAEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   +       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKEIGITNVSLELNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKVAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFEAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P  +      +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIEMG-LDAYIAVLGAG---ANGKA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  +I +QF  AD+      + +G   +   ++ +K+ +T  
Sbjct: 345 LELVQSLRAQGFAAERDYLDRKIKAQFKSADIFQAKTIITLGESELESGELTVKNNVTRQ 404

Query: 426 REDMSLEEV 434
              ++LE +
Sbjct: 405 EVTVALEAI 413


>gi|71066173|ref|YP_264900.1| seryl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|123648178|sp|Q4FR92|SYS_PSYA2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71039158|gb|AAZ19466.1| seryl-tRNA synthetase [Psychrobacter arcticus 273-4]
          Length = 427

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 20/244 (8%)

Query: 17  DAEIASHKLMLRT-GMIHQHSK----GIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D EI  H  +  T GM+   +     G    +  GQ  +    +   +      + G  E
Sbjct: 133 DFEIKDHAHIGETLGMLDFEAAAKLTGSRFNVLKGQLAQMHRALIQFMLNTHTIKYGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             VP + +++    +G+   +  ++ +L    + +D      PT E  MT++ R      
Sbjct: 193 TYVPYIVNSESLKGTGQLPKFEGDLFKLINHTNNDDMDFYLIPTAEVPMTNLVRGERLDI 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + LP  F      FR E     R   G++R  +F   +  +   T E S      M    
Sbjct: 253 KELPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKVEMVNI-ATAEQSDELLEAMTGQA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I  +L L    ++  +G +G         E  + +     ++    +  DF      T
Sbjct: 312 EFILQQLNLPYRTVKLCTGDMGFAAQKTYDIEVWLPSQDTYREISSCSNCGDFQARRMGT 371

Query: 238 DFDD 241
              D
Sbjct: 372 RVKD 375


>gi|322374023|ref|ZP_08048557.1| histidine--tRNA ligase [Streptococcus sp. C150]
 gi|321276989|gb|EFX54060.1| histidine--tRNA ligase [Streptococcus sp. C150]
          Length = 426

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 134/434 (30%), Gaps = 53/434 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPADSAKWQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F+ LG+K + +   S       
Sbjct: 120 AG--RLREFHQLGVECFGSKNPATDVETIAM--AYQ-LFNTLGIKDVTLHLNSLGNTESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 175 QAYRQALIDYLTPMRESLSKDSQRRLDENPLRVLDSKEKEDKLAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGAD 306
                            +  +          RG++     IF F T           G  
Sbjct: 235 AHFDEVRTML-------ESLNIPYVIDTNMVRGLDYYNHTIFEFITTIDKSELTICAG-- 285

Query: 307 GKDHYVQMGSYGIGA----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+   +     G         +    +    D +GI  P       + +  + +      
Sbjct: 286 GRYDSLVEYFGGPETAGFGFGLGLERLLLVLDKQGITLPVEEG-LDVYIAVLGS---EAN 341

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   +   G     D +G +I +QF  AD       + +G   +   +V +K+  
Sbjct: 342 GKALELAQAIRHQGFKAERDYLGRKIKAQFKSADAFKAKTVITLGESELESGQVSVKNNT 401

Query: 423 TGIREDMSLEEVIN 436
           T     +S EE+  
Sbjct: 402 TREEVTVSFEELTE 415


>gi|320100437|ref|YP_004176029.1| glycyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319752789|gb|ADV64547.1| glycyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 582

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSH---DGKG-IIWPDSVAPFKISLINI----KAHD 358
           G+     +     G  R++  V+E ++   DGK  +  P  +AP+ +++  +    +   
Sbjct: 435 GEKIIPHVVEPSFGVERLLYVVLEHAYTVRDGKVVLRLPRHLAPYHVAVFPLVAGRRPEH 494

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +    IY RL K G    +DD    IG ++A AD +G P  V V  + + D  V +
Sbjct: 495 ARIVEVARDIYRRLVKKGFRAIYDD-DGSIGRRYARADEVGVPFAVTVDYQTLEDGTVTV 553

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T ++E +S++ +  Y   ++
Sbjct: 554 RDRDTALQERVSVDRLEEYFLEKY 577



 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 94/334 (28%), Gaps = 77/334 (23%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYG---- 90
            G Y + P+G      +          +    +E+  P +    ++  SG  +S+     
Sbjct: 34  AGFYDFGPVGVLLKRGLIDAWLRTFVYSNDLVVEVETPMINPRIVFKASGHEESFMDPVV 93

Query: 91  ----------------------------KEMLRLADRND--------------------- 101
                                       +EM ++   +                      
Sbjct: 94  ECLKCGRIYRADHLIKEAAGVEVEGWSPEEMRKVIVEHGIKCPECGGDLGKPFYTLLLFK 153

Query: 102 --------KAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRS 152
                   +     P + + M   F + ++  RN LP    Q+    R+E+ PR G++R 
Sbjct: 154 TEIGPYKGEVGYLRPENAQGMFINFANVLRMMRNKLPLGIAQVGRVARNEISPRQGLLRL 213

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF + +   F    E SK S   +            ++   +R  +         E   
Sbjct: 214 REFTIMEFEFFFDPEEASKESAEYIRE----------VEDRKVRVLTSEARLKGVEEPAE 263

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  +    K             F + + +     ++   +      ++ + FD   
Sbjct: 264 YTVRELVEKGIVKTPWLAYWMGVGEAFVESLGVPREKVRFIEKHPHERAHYSLQTFDQEV 323

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             ++     +  G+ +   T Y L     +  AD
Sbjct: 324 YTEKYGWIEV-AGYAYR--TTYDLSRHMQYSKAD 354


>gi|239616783|ref|YP_002940105.1| histidyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239505614|gb|ACR79101.1| histidyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 419

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 124/413 (30%), Gaps = 31/413 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   IR+        E+  P  +  +L+  S     D   KEM    D+  +++   
Sbjct: 19  WHYIENTIRKITKLYAFEEIRTPIFEHTELFKRSVGESTDVVQKEMYTFNDKGGRSLTLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +    R  P   + +   FR E +P+ G  R R+F            
Sbjct: 79  PEGTASVARAYVENGFINRGSPLKLFYVGPMFRYE-KPQAG--RLRQFHQFGIEILGSHD 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             + +    +    +     LG+    +   S            VL D    ++    D 
Sbjct: 136 STADYE---VIELGINFLKELGISGTKLYINSVGCNKCRPKYNEVLKDYYSDKLSTLCDD 192

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                 +      D   ++  V +             +  F+ L    +      EV H 
Sbjct: 193 CKRRYNTNVLRLLD-CKIDKEVAEGAPSIHNYLCDDCKIHFEQLQYYLKSRNLDYEVDHK 251

Query: 288 FYFGTKY---------SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              G  Y         S  + A  +   G  +   +   G  ++  V          + I
Sbjct: 252 LVRGLDYYTKTAFEIRSNMLGAQDQVLAGGRYDGLVEYIGGKSVPAVGFAAGM---ERMI 308

Query: 339 IWPDSVAPFK-------ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +    +           ++++ +            +   RL K G   F D M   + ++
Sbjct: 309 LLLKKMGIEPKVEELNTVAILPMNK---EAFVKAFEFAERLRKKGISTFVDVMERNLRNK 365

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  A  +G  + V++G + +    V IK    G +  +  + + +Y   +   
Sbjct: 366 FKHASRIGAKIAVVIGEEELEKGFVTIKVMEEGSQYTVDSDWMADYIFKKLKE 418


>gi|332158548|ref|YP_004423827.1| histidyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034011|gb|AEC51823.1| histidyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 433

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 144/451 (31%), Gaps = 60/451 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  KG   +LP        V   IRE     G  E+  P ++   L+   SG  +  
Sbjct: 1   MIERV-KGTRDFLPEEMIKRRWVFERIREVFEAYGFKEVLTPVMEYTKLFQLRSG--EEI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D+  + +   P     +  ++ +  ++    P  +Y I   FR E  P+ G 
Sbjct: 58  VKQLYAFKDKGGRDVSLRPDMTSSVARLYVNSFQN-APKPIKWYYIANMFRYEE-PQSG- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R REF              +      +   ++  +   GL+   +   +  +  + +  
Sbjct: 115 -RYREFWQAGVELIGSDKVEADAE---VIALFVESYLATGLRDFTVNIGNRILLDEFAKM 170

Query: 210 FIVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             V  + G  ++   +D     +F    ++    D      +                E+
Sbjct: 171 LGVRDNIGLMRIIDKRDKLTQEEFIKALKDFGLKDNKINKVLELINIKGKPDDVLPLAEE 230

Query: 267 LFDSLP----------------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----- 305
           LF+S                           I++G    F     +   A          
Sbjct: 231 LFNSGKSMEEISRLYKLTELLEWYGVSEWIRIDLGIARGFDYYTGIVFEAIAPNELGIGS 290

Query: 306 --------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                          G+        + IG  R++  ++E     K +I    V P  + +
Sbjct: 291 IGGGGRYDNLIEVFGGRPTPA--TGFAIGIERLIP-ILEW----KKLIPKLRVEP-DVFV 342

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I    +  R     I  RL +       +  G ++      A+ +G  + +IVG K V
Sbjct: 343 VPIT---EEVRRIAIDITTRLRRARIKTELELTGRKLRKALDYANRIGVKVTIIVGKKDV 399

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               V ++   TG + ++++++V        
Sbjct: 400 ERGVVTVRDMETGEQSEVNIQDVEEKVREII 430


>gi|332705412|ref|ZP_08425490.1| seryl-tRNA synthetase [Lyngbya majuscula 3L]
 gi|332355772|gb|EGJ35234.1| seryl-tRNA synthetase [Lyngbya majuscula 3L]
          Length = 427

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G  E+  P L +++    +G+   + ++  + +D +   + 
Sbjct: 176 GAALERALINFMLDQQIAAGYTEVMPPVLINSESLTATGQLPKFAEDSFKCSDDD---LW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +++R  I     LP         FR E     R   G++R  +F   +  
Sbjct: 233 LAPTAEVPLVNLYRDEILEASQLPINLCAFTPCFRREAGSYGRDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S   + K+  +   I   L L    +   +G IG   +     E  + +   
Sbjct: 293 KI-VEPSTSSQEHQKLLKNAEAILETLKLPYRTVELCTGDIGFSAATTYDLEVWLPSQRT 351

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 352 YREISSCSNCFDF 364


>gi|297544514|ref|YP_003676816.1| histidyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842289|gb|ADH60805.1| histidyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 418

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 140/431 (32%), Gaps = 35/431 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        V  +IR+  +  G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDILPSESYKWQYVEELIRKICDDYGFREIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  H       P   Y I   +R E RP+ G
Sbjct: 61  VRKEMYTFTDKGGRSITLKPEGTSPAVRAFIEHNLYAEAQPTKLYYITPVYRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRAESGPIGG 204
             R RE        F      +      + ++           L + S+   A       
Sbjct: 120 --RLREHHQFGVEIFGAKSASADAEVISVAMTLLKKLGLNNLELRINSVGCSACRKNYNK 177

Query: 205 DLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            L        +          +      +  +      I     ++  +           
Sbjct: 178 VLKDFLKDNLEYLCDDCKVRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKNHFEE 237

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSAT--------FKG---ADGKD 309
            +K  D +  +  +  R I  G  +Y  T +   S  + A         + G     G  
Sbjct: 238 LQKYLDVMGYDYMIDPR-IVRGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G +G+G  R++  +     +  GI  P    P  + L  I    +  +     + 
Sbjct: 297 SMPGVG-FGMGLERLLITL-----EQNGIEIPK---PEGVDLF-IAYVGEDAKLFTFALA 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G  V  D+M   + +Q   A+ L     +++G + +  +KV++K    G   ++
Sbjct: 347 NKLRFNGLKVERDNMDRSLKAQMKYANKLNAKFAIVIGEEEMKKNKVKLKDMRDGSEVEI 406

Query: 430 SLEEVINYASH 440
           S++E+     +
Sbjct: 407 SIDEIEQRIKN 417


>gi|169831068|ref|YP_001717050.1| histidyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229558654|sp|B1I363|SYH_DESAP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169637912|gb|ACA59418.1| histidyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 420

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 133/435 (30%), Gaps = 46/435 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDS 88
           M+    +G    LP        V A+IR+     G  E+  P  ++ +L+        D 
Sbjct: 1   MLISRPRGTSDLLPGDTARWQRVEAVIRDLCRVYGYGEIRTPLFEATELFQRGVGDITDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P     +T  +  +       P   + +   FR + RP+ G
Sbjct: 61  VEKEMYTFTDKGGRSLTLRPEGTAPVTRAYLENGLHAVPQPVKLFYVGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F       F      +      +    +  F RLGL  + +   S    G  + 
Sbjct: 120 --RYRQFHQFGVEIFGAADPAADAE---VIALAMHFFDRLGLAGLELHLNSVGCPGCRAV 174

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
               LAD      +      +           + + L    E+        + V  + L 
Sbjct: 175 LRRKLAD------YFEPRADELCANCRGRLRKNPLRLLDCKEERCREAGRGAPVPVDYLC 228

Query: 269 DSLPENKRVSARGIE-VGHIFYF------GTKY--SLPMSATFKGADGKDHYVQMGSYGI 319
                +     R ++ +G  F        G  Y           G   +D     G Y  
Sbjct: 229 PECGGHFGRVQRYLDLLGISFKLNPCLVRGLDYYTRTAFEILVPGGGAQDAVGGGGRYDG 288

Query: 320 GAMRVVAA---------------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                +                 ++  S      + P      +  ++ I    +   + 
Sbjct: 289 LVS-AIGGPAVPGVGFALGLERTLLLWSRQAGEEVLP------QGPVVFIATAGET-EET 340

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + + L   G     +  G  + +Q   A  LG    +IVG   +   +V ++    G
Sbjct: 341 ATVLLSGLRAAGVPADREYTGRSLKAQMKFAAKLGARWVIIVGKDELEAGEVILRDMGAG 400

Query: 425 IREDMSLEEVINYAS 439
           ++  +SL EV+    
Sbjct: 401 LQTRVSLGEVVERLR 415


>gi|150014998|ref|YP_001307252.1| glycyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|254781874|sp|A6LPL6|SYG_CLOB8 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|149901463|gb|ABR32296.1| glycyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 463

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 121/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     M   P T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEMYLRPETAQGIFVNFKAVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P G+   ++K +  Y   F    L ++ ++AE+  +     
Sbjct: 215 FTFRTREFEQMELE-FFCKP-GTDLEWHKYWKDYCWNF----LLNLNVKAENLRMRDHGE 268

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                    F   + +            +             H E  
Sbjct: 269 EELS------------------FYSNATSDIEYLFPFGWGELWGIADRTDYDLSKHQEHS 310

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
                                            ++      + +   +    +GA RV  
Sbjct: 311 GQ-----------------------------DLSYLDQTTNEKYVPYVIEPSLGADRVAL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        +    IYA LSK   
Sbjct: 342 AFLIEAYDEEELEGGDVRTVMHLHPALAPFKAAILPLSKK---LSEKSLDIYAELSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + +    + D  V I++R T  +E + + E+ NY
Sbjct: 398 NLDFDETG-SIGKRYRRQDEIGTPYCITIDFDTLEDESVTIRNRDTMEQERIKISEIENY 456

Query: 438 ASHRFS 443
                 
Sbjct: 457 IQASLE 462


>gi|302670581|ref|YP_003830541.1| glycyl-tRNA synthetase GlyS [Butyrivibrio proteoclasticus B316]
 gi|302395054|gb|ADL33959.1| glycyl-tRNA synthetase GlyS [Butyrivibrio proteoclasticus B316]
          Length = 469

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 126/368 (34%), Gaps = 75/368 (20%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D  D   +   T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 157 MFKTFQGVTEDAKDTVYLRPETAQGIFVNFKNVQRTSRKKVPFGICQIGKSFRNEITPGN 216

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-ESGPIGGDL 206
              R+REF   +   F   P      +     +       LG+K   +R  +  P     
Sbjct: 217 FTFRTREFEQMELE-FFCKPGTQTEWFEYWRKTCYEWLLSLGIKKENLRLRDHDP----- 270

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E   F S    D       TD+ ++  + S               H E 
Sbjct: 271 -----------EELSFYSDHTTDIEYAFPFTDWGELWGIAS-------RTDYDLTRHQET 312

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                                         PM   F     + +   +    +GA RV  
Sbjct: 313 SG---------------------------QPMDY-FDDETNEKYIPYVVEPSLGADRVTL 344

Query: 327 AVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           A +  ++D + I             +  ++AP KI ++ +        +  EKIYA+LSK
Sbjct: 345 AFLCEAYDEENIGTEEKPDMRTVLHFHPALAPVKIGILPLSKK---LNEGAEKIYAKLSK 401

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +  +DD G  IG ++   D +G P  +    +  +D+ V ++ R +  +E ++++E+
Sbjct: 402 K-YNCEFDDRGN-IGKRYRRQDEIGTPFCITYDFESENDNMVTVRFRDSMEQERIAIDEL 459

Query: 435 INYASHRF 442
             + S +F
Sbjct: 460 EAFFSDKF 467


>gi|331086020|ref|ZP_08335103.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406943|gb|EGG86448.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 462

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 123/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y + F                      
Sbjct: 214 FTFRTREFEQMELEFFCEPGTDLE------WFAYWKKFC--------------------- 246

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L+  G  +    +  +    P E   +    S    +  +            +  
Sbjct: 247 --LDWLSSLGLKE---EEIRVRDHSPEELCFYSKATSDVEFLFPFGWGELWGIADRTDYD 301

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E  +                        T+   + K+ Y   +    +GA R+V 
Sbjct: 302 LSQHQEVSKQ---------------------DLTYFDDEKKEKYIPYVIEPSLGADRMVL 340

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A + S++D + +          +  ++AP KI ++ +        +  EK++A LSK   
Sbjct: 341 AFLCSAYDEEELEGGDTRTVMHFHPALAPVKIGVLPLSKK---LNEGAEKVFAELSKT-Y 396

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +DD G  IG ++   D +G P  V    +   D  V ++ R T  +E + +E++  Y
Sbjct: 397 NCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFESEEDGAVTVRDRDTMEQERIKIEDLKAY 455

Query: 438 ASHRFS 443
              +F 
Sbjct: 456 FEKKFE 461


>gi|256811168|ref|YP_003128537.1| histidyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256794368|gb|ACV25037.1| histidyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 413

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 139/430 (32%), Gaps = 41/430 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           + Q  +G   +LP   K    +   +RE   R G  E+  PT +S +L   ++G  +   
Sbjct: 1   MFQKPRGTRDFLPEEMKKRRFIENKLREVFERYGYKEILTPTFESFELIAKKTG--EEIR 58

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K++    D   + M   P     +   + + +K+    P   Y     FR E RP+ G  
Sbjct: 59  KQLYVFKDHGGREMALRPEMTSPVVRFYLNELKN-LQKPLRLYYFANCFRYE-RPQAG-- 114

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-----D 205
           R REF              +      +    +     + L         G + G     +
Sbjct: 115 RFREFWQMGCELIGCENPIADAE---VLNLAMDGLININLDFDVHIGHLGVLKGVLEKFN 171

Query: 206 LSHEFIVL-------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +S E  V         D    + + ++   +                  + E        
Sbjct: 172 VSEEEEVKIRRLIDKEDYDNLEAYLTQILGEEKKELIFEILKFKGGREVLDELREILKDF 231

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              +      + + E        I +G     G  Y   M     G  G       G Y 
Sbjct: 232 PKSIEAINNLEEILEFVIHDKYTINLGIAR--GLDYYTGMVFEIYGKKGAKQICGGGRYD 289

Query: 319 IGAMRVVAA----VIESSHDGKGIIWPD---SVAPFKISLINIKAHDQVCRDACEKIYAR 371
              +          +  ++    I+       +    I +I +K   ++ +     I  +
Sbjct: 290 -NLIETFGGEPTPAVGFAYGFDRIMMNIDDLEIEEETILVIPVKKDKELIK-KSLIIADK 347

Query: 372 LSKVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           L K G  V +    E +G +       A+  GF   +IVG K +++ KV +K  +TG + 
Sbjct: 348 LRKSGKIVEF----EIMGRKLRKALDYANSRGFKKVIIVGEKELNEGKVTLKDMITGEQR 403

Query: 428 DMSLEEVINY 437
            + ++E+ N 
Sbjct: 404 LVKIDELANL 413


>gi|324999166|ref|ZP_08120278.1| histidyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 435

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 136/428 (31%), Gaps = 51/428 (11%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KGI  +LP       +V   +     R G   + +P  +   L+        D   KE
Sbjct: 21  APKGIPEYLPTDSAGFVHVRDTLAAAAARAGYGYIELPVFEDTGLYARGVGESTDVVSKE 80

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR ++++   P     +      H    + LP         FR E RP+ G  R 
Sbjct: 81  MYTFADRGERSVTLRPEGTAGVVRSVIEHNLDKQGLPVKLRYAGPFFRYE-RPQAG--RY 137

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDL 206
           R+       +  +           +       F  LGL    +       AE  P   + 
Sbjct: 138 RQLQQVGVEAIGVDDPALDAEVIAVAD---EGFKALGLTGYRLELTSLGDAECRPAYRER 194

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+   D  E     +       +  +  +    ++   ++    +  +A        
Sbjct: 195 LQEFLSGLDLDEATRERAAINPLRVLDDKRPEVRAAMAGAPLLMDHLSDASAEHHAQVLA 254

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYV 312
             D L      + R             E  H    G +  +     + G     G     
Sbjct: 255 HLDDLGVAYTANPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMATLGGPELS 313

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----I 368
            +G +GIG  R + A           + P + A  ++  + +        DA ++    +
Sbjct: 314 GVG-FGIGVDRTLMACAAEG------VQPWTTARAEVFGVPLG-------DAAKRRLVVV 359

Query: 369 YARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            A L   G  V       G + G+    AD  G    +++G + + +  V +K   +G +
Sbjct: 360 AAELRARGVRVDLSYGGRGLK-GAM-KSADRSGARFALVLGDRDLENGTVGLKDLASGEQ 417

Query: 427 EDMSLEEV 434
           +D+ L+ V
Sbjct: 418 QDVPLDAV 425


>gi|315303276|ref|ZP_07873915.1| histidyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628354|gb|EFR96848.1| histidyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 427

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 145/443 (32%), Gaps = 48/443 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +              E+  P  +  +L+        D   K
Sbjct: 2   QLPRGTRDILPNEVTKWHFLETAFASVCENFQYEEIRTPIFEHTELFERGVGDSTDIVSK 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 62  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKLYYNEPMFRYE-RPQGG- 118

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              + +++   F R+GL+ I +   S  +G   S  
Sbjct: 119 -RQRQFTQMGIEAIGSDDPSIDVEVISLAMAF---FTRIGLRDIKLVINS--LGDKESRL 172

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +    +   +  
Sbjct: 173 RHREALVSHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILAYLNEKSIA 232

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
                  Y    ++  E     +      +    E+      FG K +L     + G   
Sbjct: 233 YFDNVQTYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSEEEGFGAKTTLCGGGRYHGLVK 292

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +GIG  R++ A+     +   ++ P    P ++ +I  +   ++    
Sbjct: 293 EFGGPDTPGIG-FGIGVERILLAL-----EKAKVLIPVK-KPLEVYVIAAQPEAEL---K 342

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L +       D +  ++ +Q   A+       +I+G + +   K ++K+  TG
Sbjct: 343 AVTLVNKLRENRISAEKDYLKRKLKAQLKDANRKNAVYTIILGEEELETGKYQLKNMETG 402

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            +E +  + +I     +   ++ 
Sbjct: 403 EQESIFEDSLIMVLKEKLIESKE 425


>gi|227488416|ref|ZP_03918732.1| glycyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227543028|ref|ZP_03973077.1| glycyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091630|gb|EEI26942.1| glycyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181250|gb|EEI62222.1| glycyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 461

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 138/447 (30%), Gaps = 66/447 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + P G +  +N+          +    + +    +   + WV SG  + +     E L
Sbjct: 34  WDYGPYGVELKENLKRQWWRTMITSRPDTVGIDSSVILPRETWVASGHLEVFHDPLVESL 93

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R     +     E+        H            +        E R   G++++ 
Sbjct: 94  YTHKRYRADHLLEAYEEKH------GHPAPNGLADVNDPETGQPGNWTEPRDFSGMLKTF 147

Query: 154 EFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
              + D      L PE ++     +FV++  +          +    G IG    +E   
Sbjct: 148 LGPVDDEEGLHYLRPETAQ----GIFVNFKNVLTT---SRAKLPFGIGNIGKSFRNEITP 200

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                 T+ F   +   F  P E     D       ++     Y               P
Sbjct: 201 GNFIFRTREFEQMEMEFFVKPGE-----DEKWHQYWIDTRHKWYTDLGIDPENLRLYEHP 255

Query: 273 ENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKD 309
           + K    S R +++ + F F              T + L       G D        G+ 
Sbjct: 256 KEKLSHYSKRTVDIEYAFGFQGSTWGELEGVANRTDFDLGTHMKHSGEDLRYFDQASGER 315

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
               +     G  R + A +  ++  +              +     +AP K++++ +  
Sbjct: 316 FIPYVIEPAAGLGRAMMAFLVDAYAEEEVPNAKGGTDTRTVLRLDPRLAPVKVAVLPLSK 375

Query: 357 HDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            D       E+I   L   G  +V +D  G  IG ++   D +G P  V V    + D  
Sbjct: 376 KD-TLTPLAEEIAQTLR--GYWNVDYDTSGA-IGRRYRRQDEIGTPYCVTVDFDSLEDHA 431

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R T  +E + ++E+  Y +   
Sbjct: 432 VTVRDRDTMQQERVKIDELEGYLAQHL 458


>gi|167750313|ref|ZP_02422440.1| hypothetical protein EUBSIR_01287 [Eubacterium siraeum DSM 15702]
 gi|167656673|gb|EDS00803.1| hypothetical protein EUBSIR_01287 [Eubacterium siraeum DSM 15702]
 gi|291529864|emb|CBK95449.1| glycyl-tRNA synthetase [Eubacterium siraeum 70/3]
          Length = 458

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 115/365 (31%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P T + +  +       + + +PF   Q+   FR+E+ P  
Sbjct: 150 MFKTFQGVTEDSKSELYLRPETAQGIFVNFMNIQRTTRKKVPFGVAQVGKSFRNEITPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F                                       G DL 
Sbjct: 210 FIFRVREFEQMELEFFC------------------------------------KPGTDLD 233

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             +         + +C K  +   I  EN    D          ++        +     
Sbjct: 234 WFYFW-------KDYCKKWLLSLGINEENLRLRDHDQEEL--CFYSKATTDFEYLFPFGW 284

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +      R      +  HI   G K        F     + +   +    +G  R+  A
Sbjct: 285 GELWGVADRTDYDLTQ--HIKTSGQK-----MEYFDPETNEKYVPYVIEPSLGVERLFLA 337

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           VI  ++D + +          +   +AP K +++ +        D   +I   LSK    
Sbjct: 338 VITEAYDEEQLEDGTTRNVMHFHPYLAPVKAAVLPLSKK---LADKAGEIADELSKY-FC 393

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD G  IG ++   D +G P  +      V D  V ++ R +  +E M + +V  Y 
Sbjct: 394 VDYDDAGA-IGKRYRRQDEIGTPFCITYDFDSVEDGCVTVRERDSMKQERMPIADVKKYI 452

Query: 439 SHRFS 443
             R +
Sbjct: 453 EDRIA 457


>gi|158522755|ref|YP_001530625.1| seryl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|238686901|sp|A8ZXS1|SYS_DESOH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|158511581|gb|ABW68548.1| seryl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 425

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 79/239 (33%), Gaps = 19/239 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIE 68
            PR  E     L +    R   I         +   G      +   + +      G  E
Sbjct: 136 APRPHEEIGEALGIFDFARAAKI--AGARFPLYKGAGALMERALINFMLDIHTTEHGYTE 193

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P + +A     +G+   + +++ +L           PT E  +T+IF   I +  +L
Sbjct: 194 CLPPLMVNAKTMTGTGQLPKFEEDLFKL---ERWGFYLIPTAEVPVTNIFADEILNEADL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     +   G++R  +F   +   F   PE S     K+      I
Sbjct: 251 PIKYTAYTPCFRSEAGSYGKDTKGLIRQHQFNKVELVKF-AHPEHSYDELEKLLADAETI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             RLGL    +   SG +G   +     E    A     ++    +F DF     N  F
Sbjct: 310 LQRLGLAYRVITLCSGDMGFSAAKTYDIEVWFPAQNRYREISSCSNFEDFQARRANIRF 368


>gi|213403660|ref|XP_002172602.1| glycyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212000649|gb|EEB06309.1| glycyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 653

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 63/399 (15%), Positives = 134/399 (33%), Gaps = 78/399 (19%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +   +PF    +   FR+E+ PR G++R REFLM +   F    + S + ++++  + LR
Sbjct: 236 NNNKVPFASAMVGKAFRNEISPRSGLLRVREFLMAEIEHFVDPLDKSHYRFDEVKDTALR 295

Query: 184 IF----------------------------HRLGLKSIPMRAESGPIGGDL--------- 206
           +                               LG     +      IG D+         
Sbjct: 296 LLPRDVQLSGSTKLVEMKIGDAVEKGIVDNTTLGYFMARIYEFLKKIGIDMNRVRFRQHM 355

Query: 207 SHEFIVLA-DTGETQVFCSKDFMDFPIPSENTDFD------DIISLNSIVEQWTAPYAAT 259
           S+E    A D  + ++ CS  +++    ++ + +D         +   + E+   P    
Sbjct: 356 SNEMAHYACDCWDAEIHCSYGWIECVGCADRSAYDLSVHSAATKTPLIVQEKLAEPIVVD 415

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-------------- 305
             V         P+ KR +    E    +    + +        G               
Sbjct: 416 EFVVEVNKKKFGPKFKRDAKAVEEAMLAWTQAERQAKAEELASTGKIPVSVNGVNFVVES 475

Query: 306 -----DGKDHYVQMGSYGIGAMR------VVAAVIESSH--------DGKGIIWPDSVAP 346
                + +     + SY    +        +  V+            +   + +P +VAP
Sbjct: 476 ELVTIEKQKRTEHIRSYIPNVIEPSFGLGRILYVLMEHSYWTRPEDVNRGVLSFPPAVAP 535

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            K  ++ + + +        ++ A+L + G     DD    IG ++A  D LG P  + V
Sbjct: 536 IKALIVPL-SKNAEFDPLVRQLSAKLRRNGISNKVDDSNANIGRRYARNDELGTPFGITV 594

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               + D+ V ++ R +  +   + +E++       + +
Sbjct: 595 DFDSLKDNTVTLRERDSTKQIRGTDDEIVATLVQLIAGH 633



 Score = 38.4 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G++ + P G     N+  + R         +E+    L   ++   SG  D +   M
Sbjct: 36 SGLFDYGPPGSALQTNIVELWRRHFVIEESMLEVDCSMLTPHEVLKTSGHVDKFADWM 93


>gi|47097017|ref|ZP_00234590.1| histidyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898314|ref|ZP_05258238.1| histidyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912194|ref|ZP_05262206.1| histidyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936522|ref|ZP_05268219.1| histidyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|47014599|gb|EAL05559.1| histidyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609116|gb|EEW21724.1| histidyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590167|gb|EFF98501.1| histidyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 425

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    +         E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMEFFRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLAL-----EKADIEIPAK-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++   S+
Sbjct: 405 EQEAVSETTILEKLSN 420


>gi|295695734|ref|YP_003588972.1| histidyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295411336|gb|ADG05828.1| histidyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 424

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 130/435 (29%), Gaps = 43/435 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ Q  +G++  LP        +    R    R G  E+  P L+  +L+        D 
Sbjct: 1   MLTQRPRGMHDILPQEASLWHEIEEAARRICARYGFSEVRTPILEHTELFQRGVGENTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR  ++M   P         +  H       P  ++ +   FR E RP+ G
Sbjct: 61  VEKEMYTFNDRGGRSMTLRPEGTAGAVRAYVEHKFYGGPQPIKWFYLGPMFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F       F +           +    L     +GL+ + +   S       P+
Sbjct: 120 --RQRQFHQFGVEVFGVADPAVDAE---VIALGLDFLEDIGLEGLRLELNSVGCPQCRPM 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             +    +         +  C                    +  ++ E+      A  + 
Sbjct: 175 YRERLQAYYRP----LREQLCEDCRDRLERNPLRLLDCKRETCKALAERAPRIEEALCEE 230

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIG 320
                       +  +    E+      G  Y           G   +   +  G Y   
Sbjct: 231 CRAHDEGVHRHLE-AAGIAYEINPRLVRGLDYYTRTAFEVVEDGIGAQGTVLGGGRYNGL 289

Query: 321 AMRV---------VAAVIE------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
              +          AA +E          G+G       +   + +  I   D+   +  
Sbjct: 290 VEELGGPSVPGIGFAAGLERLILALEQRRGEG------TSETGVDVFGIALGDEASVELT 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +  RL  +GC       G+ + +Q   AD LG    +I+G +      V +K    G 
Sbjct: 344 GWL-RRLRALGCRAERGFEGKSLKAQLKAADRLGARWALILGEEERRRGVVMVKDLAGGE 402

Query: 426 REDMSLEEVINYASH 440
           + ++ + EV ++   
Sbjct: 403 QRELPVLEVESWWKE 417


>gi|289450179|ref|YP_003475044.1| histidine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184726|gb|ADC91151.1| histidine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 419

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 128/419 (30%), Gaps = 23/419 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +   +G    LP        V  +  E   +    E+ +PT ++ +++     G  D 
Sbjct: 1   MKYSAPRGTRDILPDEIYRWQYVERVFAEVCRQFAFSEIRIPTFEATEVFARGVGGSTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D++D++M   P     +   F     S    P   Y     FR E R   G
Sbjct: 61  VRKEMYTFLDKSDRSMTLRPEGTAGVVRSFIEQGMSSLPYPVRLYYNLNLFRYE-RVAKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R REF    A +F             M       F RLGL S  +   S       S 
Sbjct: 120 --RYREFHQLGAEAFGAAGAMMDIE---MIALLHSFFKRLGLHSTALHINSIGTPACRSE 174

Query: 209 EFIVLAD---TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              VL +     ET++    D  +    +     D  +     + +         D  + 
Sbjct: 175 YNKVLREYLRPYETEL--CGDCCERLAKNPLRVLDCKVDHCHEIARNAPRLLDYLDTESA 232

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--MGSYGIGAMR 323
           + F +L +          +      G  Y       F   +          G Y      
Sbjct: 233 EHFAALKDGLTALGIPFVIDTDIVRGLDYYTKTVFEFVSENVGTQGTICGGGRYDCLVEE 292

Query: 324 VVA-AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK-------IYARLSKV 375
           +   AV               +A  ++ +      D       E        +  +L + 
Sbjct: 293 MGGTAVPAVGFALGEERLLMEMAAQQLDIPRPTPTDIYVAPMGENAQWKAMCLINQLREG 352

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G     D  G  + +Q   AD +G    +++G   ++    E+K+   G +  +  E++
Sbjct: 353 GIVAQTDLCGRTLKAQMKFADKIGARFVLVLGENELTSGYAELKNMQDGSKTSIHWEDL 411


>gi|325261980|ref|ZP_08128718.1| glycine--tRNA ligase [Clostridium sp. D5]
 gi|324033434|gb|EGB94711.1| glycine--tRNA ligase [Clostridium sp. D5]
          Length = 463

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 122/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F          +Y K F   L     LGLK   +R        D 
Sbjct: 215 FTFRTREFEQMELEFFCEPGTDLDWFAYWKQFC--LDWLSSLGLKDDEVRY------RDH 266

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E +       T V     F    +       D  ++ +  V +    Y          
Sbjct: 267 DQEELSFYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQEVSKQDMSY---------- 316

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                                              F     + +   +    +GA R+V 
Sbjct: 317 -----------------------------------FDDEKKEKYIPYVIEPSLGADRMVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A + S++D + +          +  ++AP KI ++ +        +  EK++A LSK   
Sbjct: 342 AFLCSAYDEEELEGGDMRTVMHFHPALAPVKIGVLPLSKK---LNEGAEKVFAELSKH-Y 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +DD G  IG ++   D +G P  V        D  V ++ R +  +E + +E++  Y
Sbjct: 398 NCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDSMEQERIKIEDLKAY 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 FEEKLR 462


>gi|94968234|ref|YP_590282.1| histidyl-tRNA synthetase [Candidatus Koribacter versatilis
           Ellin345]
 gi|122986376|sp|Q1ISE2|SYH_ACIBL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|94550284|gb|ABF40208.1| histidyl-tRNA synthetase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 441

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 134/447 (29%), Gaps = 57/447 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP   +  + V A +R+   R    E+  P  +   L+        D 
Sbjct: 1   MI-KAVRGTRDLLPPDTELWNRVEATVRDVFQRYNFHEIRTPIFEDTALFARGVGEETDI 59

Query: 89  YGKEMLRLAD------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
             KEM    D         + +   P +   +   +  H  +        Y I  +FR E
Sbjct: 60  VSKEMFTWEDKARAQSEKSQQLTLRPENTAGVVRAYIEHQMAKSGGLQKLYYIGPQFRRE 119

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN--KMFVSYLRIFHRLGLKSIPMRAES- 199
            RP+ G  R R+F    A      P GS+      ++      +   +GL    +   S 
Sbjct: 120 -RPQKG--RYRQFFQIGAEVIGPPPSGSESPARDAEVIEMLATLLEEVGLTGWTLYLNSV 176

Query: 200 -----GP------------IGGDLSHEFIVLADTGETQVFCSKDFMDFP-------IPSE 235
                 P            +   +  +    A+T   +V   K   D P       I   
Sbjct: 177 GDANCRPAYNEALRQALASVKDKMCGDCQRRAETNPLRVLDCKVPEDQPIIETLPKIGDY 236

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKY 294
             D                    T +    +  D           G          G +Y
Sbjct: 237 LDDACKAHFAAVRAMLDKVGVPYTVNPRMVRGLDYYTRTTFEFTHGELGAQSAVLGGGRY 296

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                A     DG         + IG  R+V A+  +         P ++      +  +
Sbjct: 297 DGLSEAL----DGPKAPGI--GFAIGEDRLVMALQAAKPAE-----PMTI---DAYVAPL 342

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A           I  +L + G  V   D   ++   F  A+  G    VI G   V+++
Sbjct: 343 GAG---TNAEALGICRKLRRQGLRVELGDESFRLKKSFEAAERAGAKYIVICGENEVANN 399

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
           +  +K   TG +E ++  E+  Y  + 
Sbjct: 400 EFSVKELATGKQESVARAELAFYIRNH 426


>gi|255024220|ref|ZP_05296206.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 279

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+ + +E   RD      +L L T  + +  +G+  WLP G      +   I +++ R
Sbjct: 188 KEFIQMQKEAKERDHRKLGKELDLFTNSV-EVGQGLPLWLPKGATIRRVIERYIVDKEER 246

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   +  P + + +L+  SG +D Y   M   
Sbjct: 247 LGYNHVYTPIMANVELYKTSGHWDHYDDGMFPT 279


>gi|304373198|ref|YP_003856407.1| Glycyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309389|gb|ADM21869.1| Glycyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 458

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 124/373 (33%), Gaps = 72/373 (19%)

Query: 85  RYDSYGK--EML-----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           R++   +   M       + D+  K  +   T + +  +           LPF   QI  
Sbjct: 139 RWEEIKQFNLMFETQQGVVEDKKSKIFLRPETAQGIFINFKNIQRSMRLKLPFGIGQIGK 198

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR+E+ P   + R+REF   +   F   PE +    N++F  YL          + +  
Sbjct: 199 SFRNEITPGNFIFRTREFEQMELEIFCH-PEQA----NQIFDDYLNKIQDFLFNELKI-- 251

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  +   +      +   +    DI  L           A
Sbjct: 252 --------------------NKDLVRVRHHKQEELAHYSLATSDIEFLFLFGWGELIGLA 291

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             SD   +    +  E                    Y  P +        +  +  +   
Sbjct: 292 NRSDFDLKAHSAASGEK-----------------IDYLDPFT-------NQKFFPYIIEP 327

Query: 318 GIGAMRVVAAVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +G  R++ AV+ + +  +           +  P S++PFK++++ +            +
Sbjct: 328 SMGVDRLLLAVLTNFYKEEKLEENEEKRSLLALPYSLSPFKVAILPLVKK---LSPKALE 384

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L K      +D+    IG ++ + D +G    + V  + + D+ + I+ R +  + 
Sbjct: 385 IYNLLLKNSISATFDE-NNSIGKRYRIQDAIGTYFSITVDYQSLEDNTITIRERDSMKQS 443

Query: 428 DMSLEEVINYASH 440
            +++++++N+   
Sbjct: 444 RIAIDQLLNFLEK 456


>gi|304439601|ref|ZP_07399505.1| histidine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371913|gb|EFM25515.1| histidine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 435

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 143/446 (32%), Gaps = 62/446 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   +N+  II++   R G + +  P L+ A++ +  G  ++  +     
Sbjct: 10  PGFMELLPKDQVVFNNLLDIIKKNFERYGFLPIDTPVLEKAEVLLAKGGGETEKQVYEFT 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D AM +  T   V    +     S  + PF  YQ+   +R E R + G  R REF 
Sbjct: 70  KGTTDIAMRFDLT---VPLARYTVEHFSDLHFPFKRYQVGKVYRGE-RAQKG--RYREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------DLSH 208
             D            +      V Y  IF         +   +  I            S 
Sbjct: 124 QCDIDIIGNGKISLVNDAECPAVIYS-IFREFDFGKFTIHINNRKILNGFFKSLEVKSSE 182

Query: 209 EFIVLADT-----------GETQVFCSKDFMDFPIPSENTDFDD----------IISLNS 247
           E + + D               ++  S + ++  I     D                   
Sbjct: 183 EVMRIVDKLDKIGVDNVKEELDKIGMSSENIEKLISFIGIDGTKEEILDALKKLNCDNED 242

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT------ 301
             +      A    +    + D         ARG++    +Y GT Y   +         
Sbjct: 243 FKQGVEELEAVVKYMRAYGVDDDYFNIDLKIARGLD----YYTGTVYETFLDDHRELGSV 298

Query: 302 -----FKGADGKDHYVQMGSYGIGA--MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                +    G      M   G+     R+ + +         +I         I +I +
Sbjct: 299 SSGGRYDNLAGYYTTNLMPGVGMSIGLTRLFSKM-----QELDLIKKKGNKVSDIIIIPM 353

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   +   +I A+L K G          ++G +F  AD L     +++G   +  +
Sbjct: 354 ----ESTIEKSIEILAKLQKAGISTTIYTESGKMGKKFKYADALDIKYALVIGENELESN 409

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
              +K+  TG +E++SLE++I+  S 
Sbjct: 410 VFGLKNMETGDQEELSLEDIIDKFSK 435


>gi|224476728|ref|YP_002634334.1| histidyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254782345|sp|B9DNF9|SYH_STACT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222421335|emb|CAL28149.1| histidyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 428

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 138/439 (31%), Gaps = 46/439 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  +G    LP   +    + A + E        E+  P  +S DL+        D 
Sbjct: 1   MI-KIPRGTQDILPDQSRKWRYIEAKLDELMELYNYKEIRTPIFESTDLFARGVGDSTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELR 144
             KEM    D+ D+++   P   E    + RS+I++        P   Y     FR E +
Sbjct: 60  VQKEMYTFKDKGDRSITLRP---EGTAAVVRSYIENKMQGDPNQPIKLYYNGPMFRYERK 116

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F      +              M    + I+   GLK + +   S     
Sbjct: 117 QK---GRYRQFNQFGVEAIGAQDPSIDAEILAMV---MHIYQSFGLKHLKLVINS----- 165

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +F    +  +  +   +  +D                    +      A  +    
Sbjct: 166 --VGDFDSRKEYNKALIEHFEPVIDTFCNDCQARLYTNPMRILDCKVDRDKEAVKTAPRI 223

Query: 265 EKLFDSLPENKRVSARG-IEVGHIFYF-------GTKY----SLPMSATFKGADGKDHYV 312
               +   +      +  ++  +I Y        G  Y    +  +       DG    +
Sbjct: 224 TDYLNEESKEYFNQVKQYLDDLNIPYVEDPNLVRGLDYYTHTAFELMIDSPDYDGAITTL 283

Query: 313 QMGSYGIGAMRV----------VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             G    G + +           A  IE           +      + L  +   ++  R
Sbjct: 284 CGGGRYNGLLELLDGPKQTGIGFALSIERLLLALEEEGIEIEEDEHLDLFIVTMGEKADR 343

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            A   +   L   G     D +  +I  Q   A+ +G    +++G + + D  ++IKH  
Sbjct: 344 YAVN-LLNDLRHHGIKADKDYLKRKIKGQMKQANRVGAEYTIVIGEQELEDGNIDIKHMD 402

Query: 423 TGIREDMSLEEVINYASHR 441
           +G  + + L ++++Y  ++
Sbjct: 403 SGETDSIHLADLVSYFENK 421


>gi|168704219|ref|ZP_02736496.1| glycyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 554

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 110/367 (29%), Gaps = 53/367 (14%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           ++  +   P   + +   +++ + S R  LPF   Q+   FR+E+ PR    RSREF   
Sbjct: 215 DENKVYLRPETAQGIFANYKNVLDSSRLKLPFGIAQVGKAFRNEINPRNFTFRSREFEQM 274

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +   F    E  K  Y        + +  LG++          +  +   E +     G 
Sbjct: 275 EIEFFCHPDESMK-WYQYWRDLRKKWYSTLGIQ------SGNLVPREQGKEELAHYSIGT 327

Query: 219 TQVFCSKDFMDFPIPSENTDFDDII---------SLNSIVEQWTAPYAATSDVHNEKLFD 269
           T +     F D P   E                   +          A           D
Sbjct: 328 TDIEYLFPFSDEPQELEGVAHRGNFDLSAHAKHSGKDLGYFDEEGWNALLQTRLEPFKDD 387

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                +       E    F F                       +     GA R   AV+
Sbjct: 388 KAKREEEKKKLEKEEKARFQF--------------------VPHVIEPSAGADRFTLAVL 427

Query: 330 ESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             ++                 + +   +AP K ++  +   D    +A +++Y  L    
Sbjct: 428 CEAYSEDSVPDAKGGTETRIVMRFHPRLAPIKAAIFPLVNKD-GMDEAAKELYRELKPY- 485

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +D  G  IG ++   D  G P  + V    + D  V ++ R T  +E +   EV  
Sbjct: 486 FNVVYDQSGA-IGRRYRRQDEAGTPFCITVDGDTMKDGTVTLRDRDTLKQERIPKGEVRA 544

Query: 437 YASHRFS 443
                  
Sbjct: 545 RIEAALR 551



 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 29  TGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT-----GAIEMSV-----P 72
            G I Q S       G + + PLG +   N+     ++  R         E+ +      
Sbjct: 18  MGFIFQSSEIYGGINGFWDYGPLGVELKRNIKEAWWQDMVRNPPPGPDGQEIRMVGLDCA 77

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            + +  +WV SG    +   M+   +   +   
Sbjct: 78  IIMNPKVWVASGHVGGFSDPMMDCKESKKRYRA 110


>gi|294789503|ref|ZP_06754739.1| serine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294482583|gb|EFG30274.1| serine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 430

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 86/252 (34%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D +I  H  L    G+  + +    G    L  G+ A     +   + +    + G  E 
Sbjct: 135 DFDIKDHVDLGAALGLDFEKAAQLSGARFSLMKGKVARLHRALAQFMLDTHTTQHGYTEC 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + S    + +G+   +G+++  +    D         PT E  +T+  R  + S  
Sbjct: 195 YTPYIVSDSTLLGTGQLPKFGEDLFHVTRGGDETKLTQYLIPTAEVTLTNTVRDEVLSPH 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DLPMKLTAHSPCFRSEAGSHGKDTRGLIRQHQFDKVEMVQI-VQPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKLLELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRALVAVLENHQNADGSINIPKALQPY 421


>gi|323701687|ref|ZP_08113359.1| seryl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323533460|gb|EGB23327.1| seryl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 424

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  E+  P + ++D  V +G+   +  +M +L   
Sbjct: 164 FYKGLGARLERALINFMLDLHTREHGYTEVFPPFIVNSDSMVGTGQLPKFADDMFKLEGL 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           N       PT E  +T+++R  I S   LP         FR E     R   G++R  +F
Sbjct: 224 N---YYLIPTAEVPVTNLYREEILSGEQLPIYHCAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F   PE S     K+ V+  ++   LGL    +   SG +G   +     E  
Sbjct: 281 NKVELVKF-CKPEDSFDELEKLTVNAEKVLQALGLPYRVVLLCSGDMGFASAKTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + +     ++    +F DF     N  F
Sbjct: 340 LPSYNAYKEISSCSNFQDFQARRANIKF 367


>gi|89895178|ref|YP_518665.1| hypothetical protein DSY2432 [Desulfitobacterium hafniense Y51]
 gi|219669605|ref|YP_002460040.1| histidyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|123091744|sp|Q24US1|SYH_DESHY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782327|sp|B8FQR7|SYH_DESHD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|89334626|dbj|BAE84221.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539865|gb|ACL21604.1| histidyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 424

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 142/448 (31%), Gaps = 59/448 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP   +   ++   IR+     G  E+  P  ++ +L+        D 
Sbjct: 1   MAIQRPKGTQDLLPGVVEQWQDLEEQIRKICREYGYQEIRTPIFEATELFQRGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++   P     +   +  +       P   Y I   FR E RP+ G
Sbjct: 61  VNKEMYTFLDKGDRSITLRPEGTASVCRAYVENKLHGGPQPVKLYYIGPMFRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F         +           +      ++ RLGLK + +   S       P 
Sbjct: 120 --RFRQFHQFGVEVLGVDKPMVDAE---VITLVWDLYSRLGLKGLEVHVNSVGCPSCRPE 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFP----IPSENTDFDDIISLNSIVEQWTAPYAA 258
                 EF  LA   E      +   +      +  +N    +I               A
Sbjct: 175 HKKKLQEF--LAPRQEQLCKDCQSRFEKNPLRILDCKNPTCQEITQGAPTTLDTLCEECA 232

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL--PMSATFKGADGKDHYVQMGS 316
                 + L  +     +V+ R +        G  Y          +    +      G 
Sbjct: 233 EHFKELQSLLSAAEVVYKVNPRLVR-------GLDYYRKTAFEVLVEDIGAQSAICGGGR 285

Query: 317 Y-----------------GIGAMRVVAA--VIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           Y                  +G  RV+AA  + +   +G+G  +   VA            
Sbjct: 286 YDGLVQEVGGPPTPGIGFAMGMERVLAARKLAQGEQEGEGKEYLMLVA----------LG 335

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           DQ  R+    I +RL K G     D +G  + +Q   AD +      I+G + +    + 
Sbjct: 336 DQAQRE-GFAIVSRLRKQGMPAGIDLLGRSLKAQLKAADRVQAHYAAILGEEELHKGIII 394

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++    G + ++ L++       R+  +
Sbjct: 395 LRDLRLGEQVELPLQDFEEVVWKRYKED 422


>gi|319935432|ref|ZP_08009869.1| glycyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809648|gb|EFW06061.1| glycyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 458

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/407 (14%), Positives = 132/407 (32%), Gaps = 82/407 (20%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-----LADRNDKAMI 105
           + +   IR+         +  P   S D            + M +     + D  +   +
Sbjct: 119 EKMMEYIRDHH-------IKCPDCGSEDFTDI-----REFELMFKTYMGVVKDAKNVVYL 166

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
              T + +  +       S + +PF   QI   FR+E+ P   + R+REF   +   F  
Sbjct: 167 RPETAQGIFVNFKNIQRTSRKKVPFGIGQIGKSFRNEITPGNFIFRTREFEQMELEFF-C 225

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            P+     ++      ++    LGL S  +R           HE   L+         S 
Sbjct: 226 KPDTDLDWFHYWKDGCMQFLKDLGLTSENLRFRD--------HEQEELSFY---SKATSD 274

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
               +P P    +   +                                           
Sbjct: 275 IEYLYPAPLGWGELWGVADRTDYDLSRH-------------------------------- 302

Query: 286 HIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI------ 338
                  ++S   +  +   +  + +   +    +GA R+  +V   ++D + +      
Sbjct: 303 ------QEFSKK-NLEYLDPETNQKYIPYVIEPSVGADRLFLSVFADAYDEEQLENDTRI 355

Query: 339 --IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +VAP K +++ +        D   ++Y+ L     +V +D  G+ IG ++   D
Sbjct: 356 VMHLHPAVAPIKAAILPLTKKQS---DKAMEVYSML-AQDFNVEFDVAGQ-IGKRYRRQD 410

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +G P  + V     +D  V ++ R +  +  + ++E+ +Y + +  
Sbjct: 411 AIGTPFCITVDFDSETDQTVTLRDRDSMEQIRLPIDELKSYIAEKIK 457


>gi|260578817|ref|ZP_05846724.1| histidine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603115|gb|EEW16385.1| histidine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 443

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 64/435 (14%), Positives = 132/435 (30%), Gaps = 43/435 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V        +  G   + +P  +   L+        D   KE
Sbjct: 24  APKGVPDYVPPTSAEFKAVKDAFTSAAHAAGYEHVELPIFEETSLFARGVGESTDVVSKE 83

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 84  MYTFADRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLVYNGPFFRYE-RPQAG--RY 140

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGDL 206
           R+       +  +           +     R F  +GL    +        +  P     
Sbjct: 141 RQLQQVGVEAIGVDDPALDAE---VIALAHRCFSSIGLNGFRLELTSLGDWDDRPAYRQK 197

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+      E     ++      +  +  +  ++++   ++    +  +         
Sbjct: 198 LQDFLATLPLDEETQRRAQLNPLRVLDDKRPEMQEMLAEAPLMLDHLSDSSREHFETVTG 257

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
           L D L     ++ R             E  H    G +  +     + G  A      + 
Sbjct: 258 LLDDLGVGYTINPRMVRGLDYYTKTCFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQDLS 316

Query: 314 MGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              +G+G  R + A+  E      G           + +  +    +  R     I   L
Sbjct: 317 GIGFGLGVDRALLALEAEEKRASTGRR---------VDVYGVALGAEAKRRMV-GIVDDL 366

Query: 373 SKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            + G      + D G + G+    AD  G    +++G K +++  V +K      + ++ 
Sbjct: 367 RERGVSADMSYGDRGLK-GAM-KGADRAGALYALVLGDKELAEGTVTVKDLGAHEQHEVD 424

Query: 431 LEEVINYASHRFSNN 445
           L  V+   + + ++ 
Sbjct: 425 LAAVVELLAEKTADR 439


>gi|134098606|ref|YP_001104267.1| histidyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008197|ref|ZP_06566170.1| histidyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|166228608|sp|A4FBB7|SYH_SACEN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|133911229|emb|CAM01342.1| histidyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 420

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 129/435 (29%), Gaps = 43/435 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KGI  + P    A   V   + +   R G   + +P  +   L+        D   
Sbjct: 4   FNAPKGIPEYFPPESAAFLAVRETLADAARRAGYGYIELPLFEDTTLFARGVGESTDVVS 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR  +++   P     +T     +      LP   Y     FR E RP+ G  
Sbjct: 64  KEMYTFADRGGRSVTLRPEGTAGVTRSVIENGLDRGQLPVKLYYSGAFFRYE-RPQAG-- 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +       + RLGL    +   S       P   
Sbjct: 121 RYRQLQQLGVEAIGVDDPALDAEVIAIAD---EGYRRLGLTGYRIELTSLGDETCRPSYR 177

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               EF+      E     ++      +  +  +  ++++   ++    +  A       
Sbjct: 178 AKLQEFLRGLPLDEDTRKRAELNPLRVLDDKRPEVRELLADAPLMVDHLSVEAKEHYEQV 237

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG---ADGKDH 310
           +     L      + R             E  H    G +  +     + G     G   
Sbjct: 238 KTHLSDLGVAFTENPRLVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAELGGQE 296

Query: 311 YVQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +G +G+G  R + A   E    G         A   +  + +    +  +     I 
Sbjct: 297 LSGVG-FGLGVDRTLLACQAEGLAVGDQ-------ARCDVYCVPLG---EAAKRRLVTIA 345

Query: 370 ARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G        G+ + G+    AD  G    +++G + +     ++K   +G +  
Sbjct: 346 GGLRGAGVRADVAYGGKSLKGAM-KGADRSGARFALVLGERDLEAGSAQLKDLASGEQRP 404

Query: 429 MSLEEVINYASHRFS 443
           + L++ +        
Sbjct: 405 VPLDDAVAAVREALQ 419


>gi|283782944|ref|YP_003373698.1| glycine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|297242774|ref|ZP_06926712.1| glycyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|283441426|gb|ADB13892.1| glycine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|296888985|gb|EFH27719.1| glycyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 506

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 80/529 (15%), Positives = 149/529 (28%), Gaps = 149/529 (28%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRY 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRY-------------------------------D 87
              T    + +    +  + +WV SG                                 D
Sbjct: 54  MVTTRGDVVGVDTSVILPSQVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGD 113

Query: 88  SYGKE------------------------MLRLA----DRNDKAMIYGPTHEEVMTDIFR 119
              +                         MLR      +  +      P   + +   F+
Sbjct: 114 KMPENGLKDIACPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVDFK 173

Query: 120 SHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + + S R   PF    I   FR+E+ P   + R+REF   +   F               
Sbjct: 174 NVMTSTRQKPPFGIANIGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------ 221

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                                   G D +            Q +       +       +
Sbjct: 222 ------------------------GTDEAW----------HQYWIDTRVRWYVDLGVKPE 247

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              +           +      +           E + ++ R             Y L  
Sbjct: 248 NLRMYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANRT-----------DYDLSA 296

Query: 299 SATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------------- 337
            A   G D        G+ +   +     G  R + A +  ++D                
Sbjct: 297 HAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGVDKRTV 356

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +     +AP K +++ +    ++     + + A L +    + +D+ G  IG ++   D 
Sbjct: 357 LRLDPRLAPVKAAVLPLSKKPELQ-AVAQDLAADLRQHDWVIDYDEAGA-IGRRYRREDE 414

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G PL V V    + D  V I+ R T  +E +SL++V +Y + R +  R
Sbjct: 415 IGTPLCVTVDFDTLEDHAVTIRERDTMQQERVSLDKVADYVASRINEKR 463


>gi|330832115|ref|YP_004400940.1| histidyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329306338|gb|AEB80754.1| histidyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 427

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 138/436 (31%), Gaps = 61/436 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R    +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDLLPQDSAKWQYVENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ ++ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGERHITLRP---EGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F      +      M  +Y   F  LG+K I +   S       
Sbjct: 120 AG--RLRQFHQIGVECFGSNNPATDVETIAM--AYH-FFEELGIKDIRLHLNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKDQLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEEST 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                                          RG++     IF F     G   ++     
Sbjct: 235 AHFEAVKTML-------DSLGIAYVIDTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +GI  P       + +  +    
Sbjct: 288 YDGLVTYFGGPETPAFG-FGMGIERLILVL-----EKQGIELPLDTQ-LDVYIAVLG--- 337

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q        +   + K G     D +  ++ +QF  AD+ G    + +G   +   +V +
Sbjct: 338 QEANGGALDLVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIESGQVVV 397

Query: 419 KHRLTGIREDMSLEEV 434
           K+  T  + + SLE +
Sbjct: 398 KNNQTRSQVETSLEAL 413


>gi|226323777|ref|ZP_03799295.1| hypothetical protein COPCOM_01552 [Coprococcus comes ATCC 27758]
 gi|225207961|gb|EEG90315.1| hypothetical protein COPCOM_01552 [Coprococcus comes ATCC 27758]
          Length = 491

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 117/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + LPF   QI   FR+E+ P  
Sbjct: 183 MFKTFQGVTEDAKNVVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEITPGN 242

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P+     +       L     LGLK                
Sbjct: 243 FTFRTREFEQMELEFF-CKPDTDLEWFAYWKKFCLDWLFSLGLKD--------------- 286

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D        +F        +           +   N   
Sbjct: 287 EEVRYRDHDKEELSFYSKATTD-------VEFLFPFGWGELWGIADRTDYDLTQHQNVSG 339

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D                                F     + +   +    +GA RVV A
Sbjct: 340 QDL-----------------------------TYFDDETNEKYIPYVIEPSLGADRVVLA 370

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + +          +   +AP KI ++ +        +  EK+YA LSK   +
Sbjct: 371 FLCAAYDEEELEDGSTRTVMHFHPELAPVKIGVLPLSKK---LNEGAEKVYAMLSKY-YN 426

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++  Y 
Sbjct: 427 CEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMQQERIKIEDLKAYF 485

Query: 439 SHRFS 443
             +F 
Sbjct: 486 EKKFE 490


>gi|159039341|ref|YP_001538594.1| glycyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157918176|gb|ABV99603.1| glycyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 459

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 148/441 (33%), Gaps = 55/441 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + + D+W  SG  D++      L 
Sbjct: 33  WDYGPLGVELKENVRRQWWRSMVQQRDDVVGLDSAVILARDVWAASGHLDAFVD---PLT 89

Query: 98  DRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-EF 155
           +       +   H EE           S   L       +  F  E R   G+M++    
Sbjct: 90  ECQSCHKRFRADHLEETYEAKHGRPPASLSELNCPNCGNKGTF-TEPRMFNGLMKTYLGP 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  D     L PE ++     +FV+Y  +      K     A++   G    +E      
Sbjct: 149 VESDEGLHYLRPETAQ----GIFVNYKNVETVARKKPPFGIAQT---GKSFRNEITPGNF 201

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              T+ F   +   F  P  +  + +                  +    E       +  
Sbjct: 202 IFRTREFEQMEMEFFVEPGTDEGWHEYWLTERWNWYLDLGLTERNLRRYEH---PQEKLS 258

Query: 276 RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYVQM 314
             S R +++ + F FG             T + L   +   G D        G+     +
Sbjct: 259 HYSKRTVDIEYRFQFGGTEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQAKGERWIPYV 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVC 361
                G  R V A +  ++D                + +   +AP K +++ + + ++  
Sbjct: 319 IEPAAGLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKAAVLPL-SRNEAL 377

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A L +    V +DD    IG ++   D +G P  V V    + D+ V +++R
Sbjct: 378 SPKARQLAADLRQRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRNR 435

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +E +SL++V  Y   R 
Sbjct: 436 DTMAQERISLDQVERYLIERL 456


>gi|25028734|ref|NP_738788.1| glycyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|23494020|dbj|BAC18988.1| putative glycyl-tRNA synthetase [Corynebacterium efficiens YS-314]
          Length = 473

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 140/446 (31%), Gaps = 64/446 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +    +WV SG  + +     E L
Sbjct: 46  WDYGPLGVELKENIKRQWWRTMVTSRPDVVGVDTSVILPRQVWVTSGHVEVFTDPLVESL 105

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R     +     E+        H  +         +     +  E +   G++++ 
Sbjct: 106 HTHKRYRADHLLEAYEEKH------GHPPANGLADINDPETGQPGKWTEPKAFSGLLKTF 159

Query: 154 EFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
              + D      L PE ++  +            R+             IG    +E   
Sbjct: 160 LGPVDDEEGLHYLRPETAQGIFVNFKNVMNS--SRMKPPFGIA-----NIGKSFRNEITP 212

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                 T+ F   +   F  P E     D       ++     Y       +       P
Sbjct: 213 GNFIFRTREFEQMEMEFFVKPGE-----DEEWHQHWIDARHQWYIDLGVNPDNLRLYEHP 267

Query: 273 ENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKD 309
           + K    S R +++ + F F              T Y L + +   G D        G+ 
Sbjct: 268 QEKLSHYSKRTVDIEYAFNFANSKWGELEGIANRTDYDLRVHSEGSGEDLSYFDQETGER 327

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
               +     G  R +   +  ++                 +     +AP K++++ +  
Sbjct: 328 WIPYVIEPAAGLGRAMMVFLMDAYHEDEAPNSKGGVDKRVVLKLDRRLAPVKVAVLPLSK 387

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             ++     EK+ A L +   +V +D  G  IG ++   D +G P  V V    + D+ V
Sbjct: 388 KPELSGP-AEKLAAELRQFW-NVEYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAV 444

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++ R T  +  + L+E+  Y + + 
Sbjct: 445 TVRERDTMEQIRVPLDELQGYLAQQL 470


>gi|160940874|ref|ZP_02088214.1| hypothetical protein CLOBOL_05766 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436118|gb|EDP13885.1| hypothetical protein CLOBOL_05766 [Clostridium bolteae ATCC
           BAA-613]
          Length = 462

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 126/364 (34%), Gaps = 71/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKSTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y + F    L+S+ ++ +         
Sbjct: 214 FTFRTREFEQMELEFFCKPDTDLE------WFAYWKEFCINWLRSLGIKDD--------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E      + E   F SK   D                  +   +   +     + +   
Sbjct: 259 -ELRARDHSPEELSFYSKATTD------------------LEYLFPFGWGELWGIADRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +D     K               G   S      F     + +   +    +GA RV  A
Sbjct: 300 YDLSQHQKVS-------------GQDMS-----YFDDETKERYIPYVIEPSLGADRVTLA 341

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + I          +  ++AP K+ ++ +        +  EKIY  LSK   +
Sbjct: 342 FLCAAYDEEEIGEGDVRTVLHFHPAIAPVKVGVLPLSKK---LNEGAEKIYTELSKY-FN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  +        D  V ++ R T  +  + + ++ +Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSEEDHAVTVRDRDTMEQVRVPIADLKDYF 456

Query: 439 SHRF 442
           + +F
Sbjct: 457 AEKF 460


>gi|255282516|ref|ZP_05347071.1| glycine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255266809|gb|EET60014.1| glycine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 465

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 120/357 (33%), Gaps = 54/357 (15%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       +  +Y K F   L   H LGLK               
Sbjct: 214 FTFRTREFEQMELEFFCEPDTDLEWFAYWKQFC--LDWLHNLGLKD-------------- 257

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E        E   F SK   D         F                    +    + 
Sbjct: 258 -DEVRYRDHEKEELSFYSKATTDV---EFLFPFGWGELWGIADRTDYDLTQHQNVSGQDL 313

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +    +N +     IE       G  +  L    +    +       +G+     MR V
Sbjct: 314 TYFDDQKNWKYVPYVIE----PSLGADRMVLAFLCSAYDEEN------IGTEEKPDMRTV 363

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       + +   +AP KI ++ +        +  EKI+A+LSK   +  +DD G
Sbjct: 364 ------------LHFHPVLAPVKIGVLPLSKK---LNEGAEKIFAQLSKK-YNCEFDDRG 407

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             IG ++   D +G P  V    +  +D  V ++ R T  +  + ++E+  Y + +F
Sbjct: 408 N-IGKRYRRQDEIGTPFCVTYDFESETDGAVTVRDRDTMEQVRVKIDELEAYFADKF 463


>gi|46198483|ref|YP_004150.1| glycyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|59798551|sp|Q72L85|SYG_THET2 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|46196105|gb|AAS80523.1| glycyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 506

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 127/382 (33%), Gaps = 68/382 (17%)

Query: 89  YGKEMLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           Y   M +     + D    A +   T + +  +       + R LPF   QI   FR+E+
Sbjct: 165 YFNMMFKTYVGPVEDEAALAYLRPETAQGIFVNFKNVLDATSRKLPFGIAQIGKAFRNEI 224

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI--FHRLGLKSIPMRAESGP 201
            PR  + R REF   +   F    E     Y   +    R+  +  +GL           
Sbjct: 225 TPRNFIFRVREFEQMEIEYFVRPGE---DEYWHRYWVEERLKWWQEMGL----------- 270

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                S E +V  +    ++                      +   I+ ++         
Sbjct: 271 -----SRENLVPYEQPPEELAH-----------------YAKATVDILYRFPHGLEELEG 308

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           + N   FD     K   A GI          ++S    A      GK     +     G 
Sbjct: 309 IANRTDFDLGSHTKDQEALGI---TARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGV 365

Query: 322 MRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            R V A++  +   + +              +AP K+++I +  +     +  +++ ARL
Sbjct: 366 DRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARL 425

Query: 373 SKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV----------GSKFVSDSKVEIKHR 421
             +G   V ++D G  IG  +   D +G P  V V          G+  + D  V ++ R
Sbjct: 426 LALGLGRVLYEDTGN-IGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKD-TVTVRDR 483

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +  + ++E+  +   R  
Sbjct: 484 DTMEQIRLHVDELEGFLRERLK 505


>gi|254503029|ref|ZP_05115180.1| seryl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439100|gb|EEE45779.1| seryl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 426

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 86/256 (33%), Gaps = 22/256 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
              E P++      +L    GM    +    G    +  GQ A     +   + +     
Sbjct: 135 TFNEAPKEHYELGEEL---GGMDFSTAAKLSGSRFVVLKGQIARLERALGQFMIDMHTQE 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+S P L  +D    +G+   + +++ + A  +       PT E  +T++    I 
Sbjct: 192 NGYTEVSPPLLVHSDPLYGTGQLPKFEEDLFKTATDH----YLIPTAEVPLTNLVAGEIM 247

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S   LP     +   FR E     R   G++R  +F   +  S   TPE S +   +M  
Sbjct: 248 SEDQLPLRVTALTYCFRSEAGSAGRDTRGMLRQHQFQKCELVSV-TTPEESLNELERMLG 306

Query: 180 SYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
               I  +LGL    M   +G +G         E  +       ++       DF     
Sbjct: 307 CAEMILQKLGLHYRVMTLCTGDMGFGARKTYDIEVWLPGQDTFREISSCSVCGDFQARRM 366

Query: 236 NTDFDDIISLNSIVEQ 251
           N  F    S   +   
Sbjct: 367 NARFRPAGSKQPVHVH 382


>gi|322388551|ref|ZP_08062153.1| histidine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140669|gb|EFX36172.1| histidine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 425

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 143/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKAIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKDSLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDAESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G++ P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLVL-----EKQGVVLPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LG---EEVNLKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V++K+  T    ++ LE +    S  F  
Sbjct: 393 GQVKVKNNQTREEVEVPLETISKNFSEVFEK 423


>gi|300812622|ref|ZP_07093035.1| histidine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496403|gb|EFK31512.1| histidine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 428

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 150/445 (33%), Gaps = 66/445 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      + V    R+   R    E+  P+ ++ +L+  S     D   K
Sbjct: 4   QRPKGTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +     +   PF  Y I   +R E RP+ G 
Sbjct: 64  EMYDFEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      S        +    +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSNGYLSDVET---ILLGHDLLAELGVKNYELHINTLGDSEVRQAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK   D         F            
Sbjct: 178 HDALVDYFTPVKDQLSEDSQRRLGKNPLRILDSKAEED-------QQFLPEAPKIRDYLD 230

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF----GTKYSLPMSATFKGA 305
             +       + +               RG++   G IF F     T ++ P  +T  G 
Sbjct: 231 EESKENFNKILASLDKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASP--STVLGG 288

Query: 306 DGKDHYVQMGS--------YGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINI 354
              +H V+  S        +GIG  R++  + + +    + +GI            + NI
Sbjct: 289 GRYNHLVEEFSGPETPAVGFGIGEERLMLVLSKQNPEMFEDQGI---------DFFITNI 339

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                +      ++  +L  +G    +D   +++ +QF  AD +G    V +G+K +++ 
Sbjct: 340 GEGTDI---KAVEVARQLRSLGFSAQYDVDQKKLKAQFRKADRVGARYVVTLGAKELAEG 396

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
           K+ +K    G +  +   ++ + A+
Sbjct: 397 KLTVKRLSDGQQFSLEFTDLEDKAN 421


>gi|296111415|ref|YP_003621797.1| seryl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295832947|gb|ADG40828.1| seryl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 436

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + ++ ++ G  EM  P + +      +G+Y  +  +  R+         
Sbjct: 179 GARLERAVYNFMLDQHHQEGYTEMITPIVVNDSAMFGTGQYPKFQDDAYRV---EGLEQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +       ++LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYAGETLPGQDLPIKFTALSPSFRKEAGSAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F   PE S     KM  +   I  +LGL    +   +G +G   +     E  +     
Sbjct: 296 KF-TKPEQSYDELEKMTDNAENILRQLGLPYHVIMLSTGDMGFSAAKTYDVEVWMPQQNT 354

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     +  F D   
Sbjct: 355 YREISSVSNTEDFQARRMHITFRDDSG 381


>gi|283782116|ref|YP_003372871.1| glycyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283440569|gb|ADB19011.1| glycyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 537

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 127/368 (34%), Gaps = 45/368 (12%)

Query: 93  MLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +         + A    P   + +   F++   S R  +PF   Q+   FR+E+ P+ 
Sbjct: 196 MFKTIVGALGTAEDAAFLRPETAQGIFVNFKNVCDSTRVRVPFGIAQVGKSFRNEITPKN 255

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F   P  S+  Y       ++ +  +GL +  ++     +  +LS
Sbjct: 256 FTFRSREFEQMEIEFFCH-PSTSREWYQYWRDRRMKWYTDMGLSTERLQLREHHV-EELS 313

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H     AD             ++  P               +E            H E  
Sbjct: 314 HYSCGTADI------------EYAFP------FLPAGEYGELEGIAHRGDFDLRSHMEGK 355

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D   +       G + G   + G+   L                 +     GA R   A
Sbjct: 356 LDPNSKPDLKVELGPD-GKPKHRGSGKDLTYRDDLTNE---RFTPHVIEPSAGADRATLA 411

Query: 328 VIESSH------DGKGII-------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  ++      D  G++           +AP K ++  +   D    +  ++IY  L K
Sbjct: 412 FLCEAYHEDQAPDENGVMQTRVVMKLHPRIAPIKAAVFPLVKKD-GMPEKAQEIYRALKK 470

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +VF+D+ G  +G ++   D  G P  + V  + + D+ V I+ R T  ++ +S + V
Sbjct: 471 -RYNVFYDEKGA-VGRRYRRQDEAGTPFCITVDGQSLIDNTVTIRDRDTLEQKRISADAV 528

Query: 435 INYASHRF 442
           +     R 
Sbjct: 529 LAEIETRI 536


>gi|284801910|ref|YP_003413775.1| histidyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995052|ref|YP_003416820.1| histidyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|290893879|ref|ZP_06556857.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|284057472|gb|ADB68413.1| histidyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060519|gb|ADB71458.1| histidyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|290556596|gb|EFD90132.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
          Length = 425

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    +         E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMTFFKKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLAL-----EKADIEIPAK-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++   S+
Sbjct: 405 EQEAVSETTILEKLSN 420


>gi|108756931|ref|YP_631910.1| histidyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|108460811|gb|ABF85996.1| histidyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 425

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 142/429 (33%), Gaps = 41/429 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG+   LP   +   +V A  RE   R G  E+  P ++   L+V S     D  GKEM 
Sbjct: 9   KGMNDLLPGEIEIWQHVEAQARELFGRFGYGEIRTPMVEDTALFVRSVGEETDIVGKEMY 68

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ D+++   P         +  H  + +     ++     FR E   R    R R+
Sbjct: 69  TFNDKADRSLSLRPEGTAPAARAYIEHSIANQEPLTRWFYAGPMFRYE---RMKTGRYRQ 125

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIV 212
           F    A ++    EG++    +M    ++   RLGLK I +   S    +     H  +V
Sbjct: 126 FYQIGAEAYGA-KEGAQDV--EMMDMVVQFLERLGLKDITLNINSLGDEVCRPTYHAKLV 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL- 271
                  +  C                       +I         +  +       D   
Sbjct: 183 EYLQAHREALCGDCQKRMEKNPLRVLDCKNEKCQAIAAAGPNVLESLCEPCRAHFDDVQR 242

Query: 272 --------PENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG--- 318
                           RG++     +F F   +    +A+  GA G+   +     G   
Sbjct: 243 KLTALGVRHVVNPRMVRGLDYYTRTVFEFIASHPALGTASTVGAGGRYDKLVKSLGGPDA 302

Query: 319 ------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                  G  R+V  ++      +  + PD         + +   D    DA   + +RL
Sbjct: 303 PAVGFACGLDRLV--LLLKESGQQFTVRPD---------VFVAVADAGSHDAALVLASRL 351

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G  V +D  G  + SQ   AD       +++G    +  + ++K    G    ++L+
Sbjct: 352 RREGLRVEFDTRGGSLKSQMKRADKSSAEFTLVLGEAERTSGQAKLKPMAGGEPIPVALD 411

Query: 433 EVINYASHR 441
           EV      R
Sbjct: 412 EVARVVRER 420


>gi|228478117|ref|ZP_04062728.1| histidyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228250297|gb|EEK09550.1| histidyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 426

 Score = 96.5 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 133/432 (30%), Gaps = 53/432 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPADSAKWQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F+ LG+K + +   S       
Sbjct: 120 AG--RLREFHQLGVECFGSKNPATDVETIAM--AYQ-LFNTLGIKDVTLHLNSLGNTESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 175 LAYRQALIDYLTPMRESLSKDSQRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGAD 306
                               +          RG++     IF F T           G  
Sbjct: 235 AHFDEVRTML-------DSLNIPYVIDTNMVRGLDYYNHTIFEFITTIDKSELTICAG-- 285

Query: 307 GKDHYVQMGSYGIGA----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+   +     G         +    +    D +GI  P       + +  + +      
Sbjct: 286 GRYDSLVEYFGGPETAGFGFGLGLERLLLVLDKQGIELPVEEN-LDVYIAVLGSG---AN 341

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   +   G     D +G +I +QF  AD       + +G   V   +V +K+  
Sbjct: 342 GKALELVQAIRYQGFKAERDYLGRKIKAQFKSADTFKAKTVITLGESEVESGQVNVKNNA 401

Query: 423 TGIREDMSLEEV 434
           T     +S EE+
Sbjct: 402 TREEVTVSFEEL 413


>gi|291546836|emb|CBL19944.1| glycyl-tRNA synthetase, dimeric type [Ruminococcus sp. SR1/5]
          Length = 464

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 118/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y +              +     G   
Sbjct: 214 FTFRTREFEQMELEFFCEPDTDLE------WFAYWK----------KFCLDWLSALGLKD 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D        +F        +           +   N   
Sbjct: 258 DEVRYRDHDKEELSFYSKATTD-------VEFLFPFGWGELWGIADRTDYDLTQHQNVSG 310

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D                                F     + +   +    +GA R+V A
Sbjct: 311 QDL-----------------------------TYFDDEKKQKYIPYVIEPSLGADRMVLA 341

Query: 328 VIESSHDGKGI-----------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            + S++D + +            +   +AP KI ++ +        +  EKIY +LSK  
Sbjct: 342 FLCSAYDEEVLDAEKNDVRTVLHFHPVLAPVKIGVLPLSKK---LNEGAEKIYQQLSKK- 397

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  +DD G  IG ++   D +G P  +    +  +D  V ++ R T  +  + ++E+  
Sbjct: 398 YNCEYDDRGN-IGKRYRRQDEIGTPFCITYDFESENDGAVTVRDRDTMEQVRVKIDELDA 456

Query: 437 YASHRF 442
           Y + +F
Sbjct: 457 YFADKF 462


>gi|291167027|gb|EFE29073.1| glycine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 463

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 118/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDSTAEIFLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F    E  K   Y K +         LG++   +R          
Sbjct: 215 FTFRTREFEQMELEFFCAPGEDLKWFEYWKEYC--KNFLLSLGIQVDNLRLRD------- 265

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                                     P E + + +  +       +            + 
Sbjct: 266 ------------------------HAPEELSHYSNATTDFEYKFPFGWGELWGIADRTDF 301

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 E+  V               KY  P +        + +        +GA RV  
Sbjct: 302 DLKQHMEHSGVDM-------------KYQDPTT-------NEKYIPYCIEPSLGADRVTL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +          +  ++APFK +++ +        +   +++  L+K   
Sbjct: 342 AFLIDAYDEEELEDGTVRNVLRFHPALAPFKAAVLPLTKK---LSEPATELFQDLAKY-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +D+ G  IG ++   D  G P  +      + D  V ++ R T  +  M + E+ +Y
Sbjct: 398 NVDYDETG-SIGKRYRRHDEAGTPFCITFDFDSLEDKCVTVRDRDTMEQVRMPIAELKSY 456

Query: 438 ASHRFS 443
                 
Sbjct: 457 IEESLQ 462


>gi|19552859|ref|NP_600861.1| histidyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62390530|ref|YP_225932.1| histidyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|32130116|sp|Q8NQ07|SYH_CORGL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|21324416|dbj|BAB99040.1| Histidyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41325868|emb|CAF20031.1| HISTIDYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032]
          Length = 429

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 133/430 (30%), Gaps = 39/430 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  + P    A   V      + ++ G   + +P  +   L+        D   KE
Sbjct: 16  APKGVPDYAPPKSAAFLAVRDAFVNQAHKAGFEHIELPIFEDTGLFARGVGESTDVVSKE 75

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR ++++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 76  MYTFADRGERSVTLRPEGTAGVMRAVIEHSLDRGQLPVKLNYAGPFFRYE-RPQAG--RY 132

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R +  LGL+   +   S       P     
Sbjct: 133 RQLQQVGVEAIGVDDPALDAEIIALAD---RSYRSLGLQDFRLELTSLGDRHCRPEYRQK 189

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+      E     ++      +  +  +  ++ +   ++                 
Sbjct: 190 LQDFLFALPLDEETRKRAEINPLRVLDDKRPEVQEMTADAPLMLDHLDAECREHFETVTG 249

Query: 267 LFDSLPEN---KRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
           L D +           RG++              G +  +     + G  A      +  
Sbjct: 250 LLDDMGVPYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSG 309

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             YG+G  R + A +E+     G       A  ++ +  +       +     I   L  
Sbjct: 310 IGYGLGVDRTMLA-LEAEGVTVG-------AERRVDVYGVPLGKDAKKALA-GIVNTLRA 360

Query: 375 VGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G      + D G + G+    AD       +++G + + ++ + +K      + D++L+
Sbjct: 361 AGISTDMSYGDRGLK-GAM-KGADRSNALYTLVLGEQELENNTIAVKDMRAHEQHDVALD 418

Query: 433 EVINYASHRF 442
           EV+ +   + 
Sbjct: 419 EVVAFLQGKL 428


>gi|262203036|ref|YP_003274244.1| glycyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262086383|gb|ACY22351.1| glycyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 463

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 77/465 (16%), Positives = 154/465 (33%), Gaps = 72/465 (15%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVE 82
           L+ + G I+  +K  + + PLG +  DN+          +    + +    +    +W  
Sbjct: 21  LVFQCGEIYGGTKSAWDYGPLGVELKDNIKRQWWRTMVTSRDDVVGLDSSVILPRQVWQA 80

Query: 83  SGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           SG  + +     E L    R     +          +I   H  +         +     
Sbjct: 81  SGHVEVFTDPLVESLYTHKRYRADHLIEN------YEIKHGHPPANGLADINDPETGQPG 134

Query: 140 RD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           +  E +   G+M++    + D      L PE ++            IF  +  K++   A
Sbjct: 135 KWTEPKAFSGLMKTFLGPVDDEEGLHYLRPETAQ-----------GIF--INFKNVMTTA 181

Query: 198 ESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              P      IG    +E         T+ F   +   F  P E+  +      +     
Sbjct: 182 RKKPPFGIAQIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEQWHQYWIDHRFDWY 241

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPM 298
                   +    E   D   +    S R ++V + F F              T + L  
Sbjct: 242 VQLGIDPENLRLFEHPKD---KLSHYSKRTVDVEYKFGFAGNPWGELEGVANRTDFDLST 298

Query: 299 SATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------------- 337
            A   G D        G+ +   +     G  R + A +  ++  +              
Sbjct: 299 HAKHSGEDLSFFDQASGERYTPFVIEPAAGLTRSLMAFLCDAYTEEEVPNAKGGTDTRTV 358

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +     +AP K++++ + + ++        + A L +   +V +DD  + IG ++   D 
Sbjct: 359 LKLDRRLAPIKVAVLPL-SRNEKLSPKARDLAAELRQHW-NVEFDD-AQGIGKRYRRQDE 415

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P  V V    + D  V I+ R T  +E ++L++V  Y + + 
Sbjct: 416 IGTPFCVTVDFDTLDDQAVTIRERDTMSQERVALDKVAEYLAGKL 460


>gi|150016422|ref|YP_001308676.1| histidyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149902887|gb|ABR33720.1| histidyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 417

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 143/429 (33%), Gaps = 43/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        + +  R+     G  E+  P  +  +L++ S     D   K
Sbjct: 6   QAPKGTKDMLPEDAYKWHYIESAFRKVAKTYGIREIRTPMFEHTELFLRSVGDTTDIVQK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+ ++++   P         F  +       P   Y I   FR E        R
Sbjct: 66  EMYTFNDKGNRSITLKPEGTASAVRAFVENRLFNEAQPTKLYYITPAFRYE---NVQKGR 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM------RAESGPIGGD 205
            R+F       F             +    +     LGLKS+ +           P   +
Sbjct: 123 LRQFHQCGLEVFGSNAASMDAE---VIAVAMDTLKELGLKSLSLNINNLGCPSCRPKYNE 179

Query: 206 LSHEFIV-----LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
              +F+      L DT + +    +      +  +     +I     I+  +     +T 
Sbjct: 180 ALKKFLADNYDGLCDTCKDRF---EKNPMRILDCKEKKCHEITKNAPIILDYVCEECSTH 236

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKG---------ADGKDH 310
               ++  D L         GI  G  +Y  T +  L    T  G           G   
Sbjct: 237 FNKVKEYLDILGLPYT-IDPGIVRGLDYYTKTIFEILTSDFTVCGGGRYDKLIEELGGPD 295

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +G +G+G  R++  +     + + I  P      K+  + I A  +       K+ +
Sbjct: 296 MPAVG-FGMGVERLIMTL-----EKENIEIPKE----KLFDLYIGARGEAESKYAFKLAS 345

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +G     + MG  + ++   A+ LG     I+G   +++ KV +K    G   ++S
Sbjct: 346 DLRALGVKCEINHMGRSVKAEMKYANKLGAAFTTILGEDELTNRKVNLKRMSDGEIFEVS 405

Query: 431 LEEVINYAS 439
           LE+++  A 
Sbjct: 406 LEDLMEIAK 414


>gi|20094974|ref|NP_614821.1| histidyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|32130124|sp|Q8TV61|SYH_METKA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19888228|gb|AAM02751.1| Histidyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 421

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 147/432 (34%), Gaps = 56/432 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRYDSYGKE 92
           +  KG   + P   +A   +   + +     G  E+  PT + A L+ E SG  +   +E
Sbjct: 9   ERPKGTRDFTPEEMRARRWLERYLLDVFRSYGYEEVLTPTFEHAKLFEEKSG--EEILEE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    D+  + +   P     +   + + +K  R  P     I   FR E  P+ G  R 
Sbjct: 67  MYVFKDKKGRKLALRPEMTAPVVRFYNAELK-TRPHPLKLAYIVNCFRYEQ-PQRG--RW 122

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----------RLG-LKSIPMRAESGP 201
           REF       F      +      +     RIF           R+G L  +    E   
Sbjct: 123 REFWQAGVEVFGSDRPEADVE---VIELTYRIFDGILPSGAFEVRVGHLGILRGLLEEYG 179

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IG D+ ++   L D GE     +    +    +        +++ +   +     A +  
Sbjct: 180 IGEDVQNKVAHLVDKGELDEVKTLLPAEPAEKA--------LAVVTARSESEVEEAVSGK 231

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYF------GTKY--SLPMSATFKGADGKDHYVQ 313
              E+  ++L E         E G           G  Y   +          G      
Sbjct: 232 ERAERALENLMEISDALR---EAGVDHELDFSVARGLDYYTGMVFEIHVPELGGGSQCAG 288

Query: 314 MGSYGIGAMRV----VAAVIESSHDGKGII-------WPDSVAPFKISLINIKAHDQVCR 362
            G Y      +    V AV  +    + ++        PD V   +  LI +        
Sbjct: 289 GGRYDDLVKELGGPDVPAVGMAIGFDRLLLAAELYDRIPDGVEETRALLIPL-VRSGKIW 347

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   K+      V  +V     G+ I    ++AD L +   VIVG + + +  V +K+  
Sbjct: 348 EIAAKLRKLGWVVNVEV----SGKHIRKALSLADSLEYDYAVIVGERELKEGYVSVKNLK 403

Query: 423 TGIREDMSLEEV 434
           TG++E++ L+++
Sbjct: 404 TGVQEEVPLDQL 415


>gi|320449890|ref|YP_004201986.1| glycyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320150058|gb|ADW21436.1| glycyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 506

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 125/381 (32%), Gaps = 66/381 (17%)

Query: 89  YGKEML--RLADRNDKAM--IYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDEL 143
           Y   M    +    D+A      P   + +   F++ + S  R LPF   QI   FR+E+
Sbjct: 165 YFNMMFKTYVGPVEDEASLAYLRPETAQGIFVNFKNVLDSTSRKLPFGIAQIGKAFRNEI 224

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            PR  + R REF   +   F                       R G      R       
Sbjct: 225 TPRNFIFRVREFEQMEIEYFV----------------------RPGEDEYWHRY------ 256

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E +        ++  S+D +               +   I+ ++         + 
Sbjct: 257 --WVEERLRWWQ----EMGLSRDNLVPYEQPPEELAHYAKATVDILYRFPHGLEELEGIA 310

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAM 322
           N   FD     K     GI          ++S      ++  D G+     +     G  
Sbjct: 311 NRTDFDLGSHTKDQEELGI---TARVLKNEHSTA-RLAYRDPDTGRWFVPYVIEPSAGVD 366

Query: 323 RVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           R V A++  +   + +              +AP K+++I +  +     +  +++ ARL 
Sbjct: 367 RGVLALLSEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVRNRPEITEYAKRLKARLQ 426

Query: 374 KVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV----------GSKFVSDSKVEIKHRL 422
            +G   + ++D G  IG  +   D +G P  + V          G+  + D  V ++ R 
Sbjct: 427 ALGLGRILYEDTGN-IGKAYRRHDEVGTPFAITVDYDTIGQSKDGTTRLKD-TVTVRDRD 484

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + +EE+  +   +  
Sbjct: 485 TMEQIRLHVEELEGFLREKLR 505


>gi|254828246|ref|ZP_05232933.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600634|gb|EEW13959.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 425

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 144/440 (32%), Gaps = 56/440 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    +         E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMTFFKKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAV----IESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             G      MG +GIG  R++ A+    IE S             P ++ +I  +   ++
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLALEKADIEISAKK----------PLEVYVITAQPEAEL 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                  +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+
Sbjct: 344 ---KAVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKN 400

Query: 421 RLTGIREDMSLEEVINYASH 440
             TG +E +S   ++   S+
Sbjct: 401 METGEQEAVSETTILEKLSN 420


>gi|331701367|ref|YP_004398326.1| histidyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128710|gb|AEB73263.1| Histidyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 435

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 141/436 (32%), Gaps = 52/436 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP   +  + V    R   +     E+  P  ++ D++   SG   D 
Sbjct: 1   MRYQRPKGTADILPGEAQKWNYVEETARMLFDDYRYQEIRTPMFENFDVFSRTSGDTSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ M   P     +   F            P   + +   FR E RP+
Sbjct: 61  VTKEMYDFNDKGDRHMSLRPEGTAGVVRAFVENKLYGPEHPRPVKVFYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----RLGLKSIPMRAESG-- 200
            G  R REF      +F             M +  L+ F     RL + S+  +A     
Sbjct: 120 SG--RQREFHQIGVEAFGSNEPELDVEVIAMGMDLLKHFGLSGLRLEINSLGDKASRDAY 177

Query: 201 ---------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P   +LS +  V       +V  SKD  D  I        D ++ +S    
Sbjct: 178 RQALIDYLDPHFDELSDDSKVRLHKNPLRVLDSKDKRDQEIVKGAPSILDYLNEDSQKHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-------FGTKYS-LPMSAT 301
                      H  +  +          RG++     IF         G  Y+ +     
Sbjct: 238 DK-------VKHLLESLNIPYVVDPDMVRGLDYYNHTIFEIMVDSKALGEGYTTICAGGR 290

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G      +G +G+G  R++  ++  +   K  +  D +  + + +       
Sbjct: 291 YNGLVEQLGGPEMPGIG-FGLGMERLM--LLMEAQGVKFPVL-DQLDAYVVGI------G 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       +I   L   G     D +  +  +QF  A+ L     + +G   +      +
Sbjct: 341 EQTSVLTLQIVQALRADGFAADRDYLDRKPKAQFKTANKLNAQYTITIGESELEKKTANV 400

Query: 419 KHRLTGIREDMSLEEV 434
           K   TG    + L E+
Sbjct: 401 KQMRTGTEVSVPLAEI 416


>gi|332656319|ref|YP_004301621.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|332656357|ref|YP_004301657.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|332656384|ref|YP_004306076.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|332656403|ref|YP_004306094.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|326324632|dbj|BAJ84459.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|326324662|dbj|BAJ84488.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|326324700|dbj|BAJ84524.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|326324719|dbj|BAJ84542.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
          Length = 428

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 138/429 (32%), Gaps = 46/429 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEML 94
           KG    LP   +    V  I R+  N+ G   +  P  ++ +++        D   K+M 
Sbjct: 10  KGTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVEKQMY 69

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFGVMRS 152
              DR  + +   P         +  +       P     Y +   FR E RP+ G  R 
Sbjct: 70  DFDDRGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYE-RPQSG--RQ 126

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F      + +            +    L+ F +LG+  + +   +  +G   + +   
Sbjct: 127 RQFTQIGCEALNSESPQIDVE---VISEALQFFKQLGINDLKLTVNT--LGDKETRDAYH 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNEKLFD 269
            A     + +  +   D            + S +   ++  A   +  D    ++ K F+
Sbjct: 182 KALIDYLKPYYDQLSDDSKERMYKNPLRVLDSKDETDQKIVANAPSILDSLSDYSAKYFE 241

Query: 270 SLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQMGS-- 316
            + +         E+      G  Y           S      +    G   Y  + S  
Sbjct: 242 EVKKLLDKLNIKYEIDSDMVRGLDYYTQTIFEIMSDSDVFGGGYVTVCGGGRYNGLISQL 301

Query: 317 ---------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    YGIG  R++  V + + D      PD         +   + D    +   +
Sbjct: 302 GGPDEGGIGYGIGVERLLLLVQKENPDFTPKYGPD---------VFFASADDEGDELAFE 352

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++ K G     +    ++GSQ   A         ++G K V + K E+    +   +
Sbjct: 353 VLDKIRKNGVSADKNYQDVKVGSQIKEAIRRKPRYYAVIGKKEVEEGKFELSKVDSDQTQ 412

Query: 428 DMSLEEVIN 436
            +S++E  +
Sbjct: 413 TVSVKEFED 421


>gi|305681034|ref|ZP_07403841.1| histidine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659239|gb|EFM48739.1| histidine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 426

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 129/432 (29%), Gaps = 41/432 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V           G   + +P  +   L+        D   KE
Sbjct: 11  APKGVPDYVPPASAQFIAVRDTFAHHIRLAGYEHIELPIFEDTTLFARGVGESTDVVSKE 70

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 71  MYTFADRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLGYYGPFFRYE-RPQAG--RY 127

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R F  +GLK   +   S       P   + 
Sbjct: 128 RQLQQVGVEAIGVDDPTLDAE---VIALADRCFSSIGLKDYRLELTSLGDATCRPAYREK 184

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF++     +     ++      +  +  +  ++ +   ++  + +P A         
Sbjct: 185 LQEFLLKLPLDDATRHRAEINPLRVLDDKRPEVQELTADAPLMLDYLSPQAREHFEAVTG 244

Query: 267 LFD---SLPENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
             D             RG++              G +  +     + G  A      +  
Sbjct: 245 CLDDLGVTYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQELSG 304

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQVCRDACEKIYARLS 373
             +G+G  R + A+               VA P ++ +  +       R     +   L 
Sbjct: 305 IGFGLGVDRALLALEAEH---------TQVADPARVDVYGVALGAPAKRRL-LTLINELR 354

Query: 374 KVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G      + D G + G+    AD  G    +++G + +    V +K+ +   + D+ L
Sbjct: 355 AAGIRADMSYGDRGLK-GAM-KGADRAGARFALVLGDRELDAGIVAVKNLVDHTQTDVPL 412

Query: 432 EEVINYASHRFS 443
            +V     H   
Sbjct: 413 GQVAETLGHHVR 424


>gi|242242837|ref|ZP_04797282.1| glycyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233738|gb|EES36050.1| glycyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 463

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 129/367 (35%), Gaps = 74/367 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L  + +           S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASEWLTDLNI-----------S 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + + L D  E ++                      +   I  ++   +     + +   
Sbjct: 257 EDNMRLRDHDEDELSHYS-----------------NATTDIEYKFPFGWGELWGIASRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +       +   +  + +        +GA RV  
Sbjct: 300 FDLR-------------QHSEHSGEDF------KYHDPETNEKYIPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A +  ++  +G          + +  ++AP+K +++ +            KI+ +LS   
Sbjct: 341 AFLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSSEAIKIFEQLSSS- 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  
Sbjct: 397 FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELET 455

Query: 437 YASHRFS 443
           + + +  
Sbjct: 456 FLADKVK 462


>gi|226224121|ref|YP_002758228.1| histidyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824421|ref|ZP_05229422.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|225876583|emb|CAS05292.1| histidyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|293593656|gb|EFG01417.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
          Length = 425

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    ++        E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMEFFRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLAL-----EKADIKIPAK-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++    +
Sbjct: 405 EQEAVSETTILEKLIN 420


>gi|167037448|ref|YP_001665026.1| histidyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115862|ref|YP_004186021.1| histidyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|229558738|sp|B0K977|SYH_THEP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166856282|gb|ABY94690.1| histidyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928953|gb|ADV79638.1| histidyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 418

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 138/431 (32%), Gaps = 35/431 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        +  +IRE  +  G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDILPSESYKWQYIEGLIREICDVYGFKEIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  H       P   Y I   +R E RP+ G
Sbjct: 61  VRKEMYTFTDKGGRSITLKPEGTSPAVRAFIEHNLYAETQPTKLYYITPVYRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R RE        F      +      + ++ L+    L    + + +   P+     +
Sbjct: 120 --RLREHHQFGVEIFGAKSASADAEVISVAMTLLKK-LGLNNLELRINSVGCPVCRKNYN 176

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + +        +  C    + + I         + S   I +          D       
Sbjct: 177 KVLKEFLKNNLEYLCDDCKVRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKSHFE 236

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----------GKDHYVQMGS-- 316
           +       +    I    I   G  Y    +      D          G+   +      
Sbjct: 237 ELQKYLDIMGYDYIIDPRIVR-GLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGG 295

Query: 317 -------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  +G+G  R++  +     +  GI  P    P  + L  I    +  +     + 
Sbjct: 296 PSMPGVGFGMGLERLLITL-----EQNGIEIPK---PEGVDLF-IAYVGEEAKLFTFALA 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G  V  D+M   + +Q   A+ L     +++G + + ++KV++K    G   ++
Sbjct: 347 NKLRFNGLKVERDNMDRSLKAQMKYANKLNAKFAIVIGEEEMKENKVKLKDMRVGSEVEI 406

Query: 430 SLEEVINYASH 440
           S++E+     +
Sbjct: 407 SIDEIEQRIKN 417


>gi|289578234|ref|YP_003476861.1| histidyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527947|gb|ADD02299.1| histidyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 418

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 134/439 (30%), Gaps = 51/439 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        V  +IR+  +  G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDILPSESYKWQYVEELIRKICDDYGFREIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  H       P   Y I   +R E RP+ G
Sbjct: 61  VRKEMYTFTDKGGRSITLKPEGTSPAVRAFIEHNLYAEAQPTKLYYITPVYRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYN-------------------------KMFVSYLR 183
             R RE        F      +                                  +Y +
Sbjct: 120 --RLREHHQFGVEIFGAKSASADAEVISVAITLLKKLGLNNLELRINSVGCSACRKNYNK 177

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDI 242
           +       ++    +       + +E   L         C +   D P I     D    
Sbjct: 178 VLKDFLKDNLKYLCDD----CKVRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKN 233

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                        Y    D    +  D        + ++ I        G +Y       
Sbjct: 234 HFEELQKYLDVMGYNYIIDPRIVRGLDYYTKTAFEIISKDIGAQGTVCGGGRYD-----G 288

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G      +G +G+G  R++  +     + KGI       P  + L  I    +  
Sbjct: 289 LIEECGGPSMPGVG-FGMGLERLLLTL-----EQKGIEISK---PKDVDLF-IAYVGEEA 338

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +     +  +L   G  V  D+M   + +Q   A+ L     +++G + + ++KV++K  
Sbjct: 339 KLFTFALANKLRFNGLKVERDNMDRSLKAQMKYANKLNAKFAIVIGEEEMKENKVKLKDM 398

Query: 422 LTGIREDMSLEEVINYASH 440
             G   ++S++E+     +
Sbjct: 399 RDGSEVEISIDEIEQRIKN 417


>gi|262305721|gb|ACY45453.1| glu- + pro-tRNA synthetase [Dinothrombium pandorae]
          Length = 135

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           RG++     + G  +S      ++     GK  +V   S+GI + R +  +I    D KG
Sbjct: 17  RGVQAATSHHLGQNFSKMFEIIYEDPSEAGKKIFVYQNSWGI-STRSIGVMIMVHSDDKG 75

Query: 338 IIWPDSVAPFKISLINI-----KAHDQVC--RDACEKIYARLSKVGCDVFWDDMGE-QIG 389
           ++ P  VA  ++ +I          D+       CE++   L+  G     D       G
Sbjct: 76  LVLPPRVAAVQVIIIPCGITVQTKDDEKQHLLQKCEELRQILTAAGIRCESDLSDHNSPG 135


>gi|260584327|ref|ZP_05852074.1| serine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260157845|gb|EEW92914.1| serine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 426

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +    + G  EM  P L +      +G++  + +++ ++ D  ++ 
Sbjct: 169 LGARLERAIYNYMIDLHVEKHGYTEMITPYLVNEQSMYGTGQFPKFKEDVFQIND--ERN 226

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I     LP  F  +   FR E     R   G++R  +F   +
Sbjct: 227 LTLIPTAEVPLTNYYANEILEEAQLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVE 286

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F  TPE S     KM  +   +   LGL    +   +G +G   S     E  + A 
Sbjct: 287 MVKF-ATPETSFEELEKMTDNAEDVLRGLGLPFRTIVLCTGDMGFSASKTYDVEVWIPAQ 345

Query: 216 TGETQVFCSKDFMDF 230
               ++    + +DF
Sbjct: 346 DTYREISSCSNCVDF 360


>gi|145595945|ref|YP_001160242.1| glycyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|145305282|gb|ABP55864.1| glycyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 459

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 148/441 (33%), Gaps = 55/441 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + + D+W  SG  D++      L 
Sbjct: 33  WDYGPLGVELKENVRRQWWRSMVQQRDDVVGLDSAVILARDVWAASGHLDAFVD---PLT 89

Query: 98  DRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-EF 155
           +       +   H EE           S   L       +  F  E R   G+M++    
Sbjct: 90  ECQSCHKRFRADHLEEAYEAKHGRPPASLAELNCPNCGNKGTF-TEPRMFNGLMKTHLGP 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  D     L PE ++     +FV+Y  +      K     A++   G    +E      
Sbjct: 149 VESDEGLHYLRPETAQ----GIFVNYKNVEMVARKKPPFGIAQT---GKSFRNEITPGNF 201

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              T+ F   +   F  P  +  + +               +  +    E       +  
Sbjct: 202 IFRTREFEQMEMEFFVEPGTDEGWHEYWLAERWNWYLDLGLSERNLRRYEH---PQEKLS 258

Query: 276 RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYVQM 314
             S R +++ + F FG             T + L   +   G D        G+     +
Sbjct: 259 HYSKRTVDIEYRFQFGGTEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQARGERWVPYV 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVC 361
                G  R V A +  ++D                + +   +AP K++++ + + ++  
Sbjct: 319 IEPAAGLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPL-SRNEAL 377

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                K+   L K    V +DD    IG ++   D +G P  V V    + D  V +++R
Sbjct: 378 SPKARKLATDLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPYCVTVDFDTLDDDAVTVRNR 435

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +E +SL++V  Y   R 
Sbjct: 436 DTMAQERISLDQVERYLIERL 456


>gi|297621744|ref|YP_003709881.1| Histidyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297377045|gb|ADI38875.1| Histidyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 480

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 134/434 (30%), Gaps = 58/434 (13%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           +   G++  LP               V  +IRE   + G  E+  P L+  +L+      
Sbjct: 4   KAPPGVFDILPIDPKTPWKESHLWIYVEKVIRETAAQYGFQEIRTPILEKTELFQRGVGE 63

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D   KEM    DR  +++   P     +   +  +  S++     F+ I   FR E R
Sbjct: 64  TSDIVSKEMYMFNDRGGRSLCLRPEGTAPVIRSYIENNLSHQVPIHKFFYIGPMFRYE-R 122

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----- 199
            + G  R R+     A         +     ++       + +LGL+++ +   S     
Sbjct: 123 AQAG--RYRQHHQFGAEVIGT---QAPEQDAEVIDLLYTTYRKLGLQNLKVMINSLGDKE 177

Query: 200 -------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
                              LS E     D    ++  SK   D     +     D +S  
Sbjct: 178 CRLHFRHALKEYFSQHKKHLSEESRQRLDKNPLRILDSKSPQDQEFIEKAPSILDFLSHE 237

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-- 304
                       T       +   L        R +        G + S+     +    
Sbjct: 238 VKTHFERVQEYLTFLEIPFAINPHLVRGLDYYNRTVFEVAAEELGAQNSIGGGGRYDSLI 297

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS------LINIKAH 357
              G      +G +G G  R++  ++               AP   +      LI +   
Sbjct: 298 KELGGPDQPALG-FGTGIERIIQTLL------------KQEAPVPSAYRPTFFLIPLG-- 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + AC K+   L +   D   D  G ++G     A+ +G     +VG + +    VE
Sbjct: 343 -EKAKRACFKVLHFLRENSIDAQMDFTGRKLGKVMGYANQIGAKFVAVVGDQELETETVE 401

Query: 418 IKHRLTGIREDMSL 431
           +K+  TG      L
Sbjct: 402 LKNMETGEAISAPL 415


>gi|171057383|ref|YP_001789732.1| seryl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|238689100|sp|B1Y0I6|SYS_LEPCP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|170774828|gb|ACB32967.1| seryl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 431

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 13/217 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-- 102
             +    +   + + Q    G  E   P + + ++   +G+   + ++M  ++   D+  
Sbjct: 171 AARLHRALAQFMLDVQTQEHGYTECYTPYIVNREVLEGTGQLPKFKEDMFWVSRGGDETQ 230

Query: 103 -AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
                  T E  +T+  R  + +   LP         FR E     R   G++R  +F  
Sbjct: 231 PEQYLISTSEISLTNSVREQVLAADQLPIKLTAHSPCFRSEAGSAGRDTRGLIRQHQFDK 290

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVL 213
            +      TPE S  +   M      +  +LGL    +   +G +G   +     E  V 
Sbjct: 291 VEMVQI-TTPEQSDAALESMVGHAEAVLQKLGLPYRVLLLSTGDMGFGSAKTYDLEVWVP 349

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           A     ++    +   F      T F +    N  V 
Sbjct: 350 AQATYREISSCSNCEAFQARRMQTRFKNAQGKNEFVH 386


>gi|21228163|ref|NP_634085.1| histidyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|32130120|sp|Q8PVB0|SYH_METMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|20906611|gb|AAM31757.1| Histidyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 411

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 146/420 (34%), Gaps = 28/420 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
            +G   +LP        V +++R      G  E+  PT +  DL+  +SG  +    E+ 
Sbjct: 6   PRGTRDFLPADTARRRYVESVMRNVVLNWGYSEIITPTFEHLDLFTLKSG--EGIIGELY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + M   P     +   + + ++     P   +  +  FR E RP+ G  R RE
Sbjct: 64  NFTDKGGREMTLRPELTAPVMRFYVNELQP-FPKPLKLFYFENCFRYE-RPQKG--RFRE 119

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-----RLGLKSIPMRAESGPIGGDLSHE 209
           F              S      +  + L+        +LG  ++      G     +S+ 
Sbjct: 120 FWQFGVELIGSGKSDSDAEVIALASALLKAVGIKGDMKLGNLAVIRTLLKGLEPEIVSN- 178

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            + L D  E   +   + +   I +E     D+  L  +  ++  P       +  +L  
Sbjct: 179 VMRLVDKKE---YAGLEALLDEIGAEEQLKSDLFRLIHLQGRYILPEVKGIVGNIPELVS 235

Query: 270 SLPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                K + A G++    F    G  Y   M                G      +++   
Sbjct: 236 FEKTLKLLDAYGVDYSLDFGIARGLDYYTGMVFEVYAEGLGAQKQVCGGGSYQLIQLFGG 295

Query: 328 VIESSHDGKGIIWP------DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             +    G GI +         V P + SL+ +   D        K+   L      V  
Sbjct: 296 G-DVPSTGFGIGFDRIMEICPLVPPAQKSLVVVSKPDTHLE--AVKVATELRNY-LPVQI 351

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D M     +Q + A+ +     +IVG K +   K+ ++  ++G +E ++LEE+I   S +
Sbjct: 352 DLMERNFKAQLSYANTINADYVIIVGEKELEAGKLTLRDMVSGEQELLTLEEIIEKISGQ 411


>gi|291320191|ref|YP_003515452.1| glycyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752523|emb|CBH40495.1| Glycyl tRNA synthetase (Glycine tRNA ligase) [Mycoplasma
           agalactiae]
          Length = 458

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 130/365 (35%), Gaps = 70/365 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M        +     +   P   + +   F++ ++S R  LP    Q+   FR+E+ P  
Sbjct: 150 MFETKQGIIEGEKSLIYLRPETAQGIFVNFKNVLRSTRAKLPIGIGQVGKSFRNEVTPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    +    S    +++  + F  L    + ++ E+  I     
Sbjct: 210 FIFRTREFEQLELEVFHDPKDS--ESIFNKYLNKCKTFANL----VGIKDENIRIRAHEQ 263

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    +       +         +   N    D+ +               +   + + 
Sbjct: 264 DELSHYSSATSDIEYLFPFGWGELLGVANRTDFDLKAH------------MQATGESLEY 311

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD +  +K +                                    +    +G  R++ A
Sbjct: 312 FDPVTNSKLI----------------------------------PYVIEPSMGLDRLMLA 337

Query: 328 VIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++  S+D +          +  P++VAP+K +++ +        +  E+IY +L K+   
Sbjct: 338 LLIDSYDEELVSENDTRIVLKVPNAVAPYKFAILPLVKK---LNEKAEEIYKQLLKLNIP 394

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + +DD G  IG ++   D +G P  + +    ++D  + I++R +  +E +S+  +  +A
Sbjct: 395 ITYDDAG-SIGKRYRRQDSIGTPYCITIDYDSLNDECITIRNRDSMSQERISISSLYEFA 453

Query: 439 SHRFS 443
              F 
Sbjct: 454 QKTFK 458


>gi|209526080|ref|ZP_03274612.1| histidyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209493468|gb|EDZ93791.1| histidyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 441

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 137/456 (30%), Gaps = 50/456 (10%)

Query: 21  ASHKL----MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
            SH L    +L    I    +G    LP        V ++  E   R    E+  P  + 
Sbjct: 5   VSHILARIYILEMESIQSL-RGTRDILPEEVGYWQWVASVAEETLARGNYQEIRTPIFEP 63

Query: 77  ADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             L+    G   D  GKEM    DR D+++   P     +   +              + 
Sbjct: 64  TALFERGIGEATDVVGKEMYTFCDRGDRSITLRPEGTAGVVRAYIERKLFANPGVQRLWY 123

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   FR E RP+ G  R R+F              +      + V    I   LG+ ++ 
Sbjct: 124 MGPMFRYE-RPQAG--RQRQFHQLGVEVLGSDDPRADVEVIAVAV---DILKSLGVTNLH 177

Query: 195 MRAESGPIGGDLSHEFIVLAD---TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +   S     D  +    L D     + ++           P    D  D  +     + 
Sbjct: 178 LNLNSVGDRTDRQNYRQALVDYLTPFQDELDQDSRDRLTRNPMRILDSKDERTQEITRDA 237

Query: 252 WTA--------PYAATSDVHNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSL 296
            +                 +  K             RG++              G + ++
Sbjct: 238 PSILDYLGERSQSHFERVQYLIKELGISYTLNPRLVRGLDYYTHTAFEIISDDLGAQATV 297

Query: 297 PMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                + G     G      +G + IG  R++  +++  H       P  V P     + 
Sbjct: 298 CGGGRYDGLVQELGGPEVPAVG-WAIGLERLII-LLQQLHQ------PPQVTPE----LY 345

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           + +  +        +  +L + G  V  D  G   G QF  AD  G    +++G      
Sbjct: 346 LVSRGEKAEANSLILAQKLRQAGLRVELDLSGSAFGKQFKRADRSGAVACLVLGDAEAIA 405

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA----SHRFSNN 445
             V +K   +G +   +  ++I  A        +NN
Sbjct: 406 GTVNLKWLKSGEQTVFNQVDLIAKADQIKQQLIANN 441


>gi|218961936|ref|YP_001741711.1| seryl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167730593|emb|CAO81505.1| seryl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 419

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 17/213 (7%)

Query: 14  NPRDA-EIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIE 68
            P+D  E+A    +L   R   I     G   +   G +    +   + E    +    E
Sbjct: 135 TPKDHLELAIQNKLLDLPRGAKI--SGSGFPLYTGEGARIERALINFMLEFHLQKHNYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +      +G+     ++M R+       +   PT E  +T+IF   + SY++L
Sbjct: 193 LMAPVIVNRKTMTGTGQLPKLEEDMYRI---EKDDLFLIPTAEVPVTNIFADEVLSYKDL 249

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     +   G+ R  +F   +   F   PE S  +  ++      I
Sbjct: 250 PQKFVAYTPCFRREAGSYGKETKGLQRLHQFNKVELVHF-TEPEKSAEALEQILSDAEDI 308

Query: 185 FHRLGLKSIPMRAESGP--IGGDLSHEFIVLAD 215
                L    +   +G        +++  V A 
Sbjct: 309 LQAFNLHYRVVALCTGDLSFASQKTYDLEVWAP 341


>gi|319947810|ref|ZP_08022004.1| histidyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438534|gb|EFV93460.1| histidyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 426

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 131/433 (30%), Gaps = 41/433 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           +  KG+  ++P        V   I     R G   + +P  +   L+        D   K
Sbjct: 11  KAPKGVPDYVPPASAGFVAVRDAITTAARRAGYGHIELPIFEDTALFARGVGESTDVVSK 70

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR  +++   P     +      H      LP         FR E RP+ G  R
Sbjct: 71  EMYSFEDRGGRSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLCYAGPFFRYE-RPQAG--R 127

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+       +  +           +       F  LGL    +   S       P   +
Sbjct: 128 YRQLQQVGIEAIGVDDPALDAEVIAVAD---EAFRSLGLTGFRLELTSLGDETCRPQYRE 184

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+   D  E     ++      +  +  +    +    ++    +  +A       
Sbjct: 185 RLQSFLAGLDLDEATRERARINPLRVLDDKRPEVRAQLEDAPLMIDHLSDASAEHFATVR 244

Query: 266 KLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYV 312
              D+L     V+ R             E  H    G +  +     + G         +
Sbjct: 245 AHLDALGVPYTVNPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMEQLGGQAL 303

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +GIG  R V A+       +G+   D  A  ++ +  +             + A  
Sbjct: 304 SGIGFGIGVDRTVLAL-----QAEGL---DPAAQGRVDVYGVALGAAAKAAMV-PVLAEF 354

Query: 373 SKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            + G      + D G + G+ F  AD  G  + V++G   +      +K   TG +E + 
Sbjct: 355 RRNGLRADMAYGDRGMK-GA-FKAADRSGAAVTVVIGENELETGTAVVKTMSTGEQEPVP 412

Query: 431 LEEVINYASHRFS 443
           LE ++ + +    
Sbjct: 413 LEAILGHVTRAVE 425


>gi|281492566|ref|YP_003354546.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|281376230|gb|ADA65721.1| Histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
          Length = 430

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 139/435 (31%), Gaps = 59/435 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRY-DSYGK 91
           Q  KG    LP        +  I R   N     E+  P  +S +L+   +G   D   K
Sbjct: 4   QKPKGTADLLPAETAKWQYIEEIARGVFNDYNFKEIRTPMFESYELFSRATGETSDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-----FTFYQIQLKFRDELRPR 146
           EM    D+  + +   P   E      R++I++    P        +     FR E RP+
Sbjct: 64  EMYDFEDKGGRHIALRP---EGTASAVRAYIENKLYAPEVVKPVKLWYDAPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F         +           M  +   +F +LG+  + +   +       
Sbjct: 120 SG--RLRQFHQFGVECLGVKNPAVDVEIIAMADT---LFRQLGITGLKLALNTLGDMESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P    LS +     +    +V  SK+  D  I        D ++  S 
Sbjct: 175 MAYRQALIDYLTPFENQLSEDSRRRLNENPLRVLDSKEAEDIAIVKNAPAILDYLNEASK 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP---------MS 299
                   A    +H E   D                 IF F   +              
Sbjct: 235 AYFEEVK-ALLESLHIEYTIDPNMVRGLDYYN----DTIFEFIVDFDGKDLTVCGGGRYD 289

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +  DG         +G+G  R++  +I    +   I  P+      + +  +    +
Sbjct: 290 GLVEYFDGPATPAF--GFGLGIERLL--MIAQKQEINFI--PEET--LDVYIAVMG---E 338

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  K+   L +    V  D    ++G+QF  A+ LG  L + +G   +   ++++K
Sbjct: 339 KANLEATKLAESLREQAFKVERDFSNRKLGAQFKTAEKLGAELIITLGEDEIRTGQIKVK 398

Query: 420 HRLTGIREDMSLEEV 434
           H  T  + + +L+ V
Sbjct: 399 HNQTRKQVETTLKAV 413


>gi|332798643|ref|YP_004460142.1| glycyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696378|gb|AEE90835.1| glycyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 460

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 159/500 (31%), Gaps = 136/500 (27%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q S+   G+   + + PLG +   NV     ++    R   + +    L  
Sbjct: 15  LCKRRGFIFQGSEIYGGLANTWDYGPLGIELKRNVKDYWWKKVVHERDDVVGLDSAILMH 74

Query: 77  ADLWVESG-------------------RYDSYGKE------------------------- 92
             +W  SG                   R D   ++                         
Sbjct: 75  PKVWEASGHVAGFNDALIDCKQCKSRFRADHLIEDSLNIHVEGKSVQELTEIIHDNKIKC 134

Query: 93  ----------------MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFT 131
                           M +    + + +   +   P   + +   F++ + S R  LPF 
Sbjct: 135 PTCGSVAWTEARVFNLMFKTYQGVTEDSSSIVYLRPETAQGIFVNFKNVLDSCRMKLPFG 194

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             QI   FR+E+ P     R+REF   +   F + P   +  +       +  F  LG+K
Sbjct: 195 IAQIGKSFRNEITPGNFTFRTREFEQMELEFF-VKPGDDQEWFEYWRQFMVDFFVSLGVK 253

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +R        D S E +     G T +       ++  P    +   + +       
Sbjct: 254 KENLRL------RDHSPEELSHYSKGTTDL-------EYKFPFGWGELWGVANRTDYDLS 300

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
               Y+  S  +                                      F   + K   
Sbjct: 301 RHMEYSGKSLTY--------------------------------------FDPKENKQIV 322

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRD 363
             +    +GA R + AV+  ++D +         +     +AP K +++ + +  +   +
Sbjct: 323 PYVVEPSLGADRAILAVLCDAYDEEEVQGDTRVVLHLKPEIAPIKCAVLPL-SKKEPLEE 381

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+Y  L K    + +D+ G  IG ++   D +G P  V +    + D+KV I+ R T
Sbjct: 382 LACKVYHDLKKY-YHMEYDNTG-SIGKRYRRQDEIGTPFAVTIDFDSLEDNKVTIRDRDT 439

Query: 424 GIREDMSLEEVINYASHRFS 443
             ++ + + +V +Y   +  
Sbjct: 440 MQQDRIEINQVRDYLKEKLR 459


>gi|332708991|ref|ZP_08428961.1| histidyl-tRNA synthetase [Lyngbya majuscula 3L]
 gi|332352180|gb|EGJ31750.1| histidyl-tRNA synthetase [Lyngbya majuscula 3L]
          Length = 427

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 138/439 (31%), Gaps = 33/439 (7%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-Y 86
            G+I Q  +G    LP        V AI ++  NR    E+  P  +  +L+    G   
Sbjct: 1   MGLI-QALRGTRDILPDEVGYWQQVEAIAQQILNRAAYREIRPPIFERTELFERGIGEAT 59

Query: 87  DSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           D  GKEM    DR    +++   P     +   +  +           +     FR E  
Sbjct: 60  DVVGKEMYTFNDRATPPRSVTLRPEGTAGVVRAYIQNSLYAAGGVQRLWYTGPMFRYE-N 118

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P+ G  R R+F              +      +    + I + LGL  + ++ +   +G 
Sbjct: 119 PQAG--RQRQFHQLGVEVIGSRDPRADAE---VIAIAIDILNTLGL--VNLKLDLNSVGS 171

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA---ATSD 261
               +    A       +  +   D            + S +   ++             
Sbjct: 172 TEDRQQYRQALVDYLTPYKDELDEDSQDRLTRNPLRILDSKDKRTQEIAQDAPSILDYLS 231

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSATFKGADGKDHYV 312
             ++  FD + +  + +    ++      G  Y         S  + A      G  +  
Sbjct: 232 SESQSHFDQVKQLLQDNGISYQLNPRLVRGLDYYTHTAFEIISDDLGAQATVCGGGRYDG 291

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA--PFKISLINIKAHDQVCRDACEKIYA 370
            +   G      V   I      + +I    +   P       + +  +V +    K+  
Sbjct: 292 LVHELGGNKTPAVGWAIGL---ERLVILLQQLQASPTLALDFYLVSRGEVAQAQGLKLAQ 348

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L + G  V  D  G   G QF  AD  G    +++G      + V +K   +G +E M+
Sbjct: 349 QLRQAGLAVELDLSGSAFGKQFKRADRSGAVACLVIGDAEAQSNTVNLKWLASGEQETMT 408

Query: 431 LEEVINY---ASHRFSNNR 446
             ++++       +    R
Sbjct: 409 QADLLDKTDQLKGQIEQLR 427


>gi|332654830|ref|ZP_08420572.1| glycine--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516173|gb|EGJ45781.1| glycine--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 478

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 128/362 (35%), Gaps = 52/362 (14%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D  +   +   T + +  +       + + LPF   QI   FR+E+ P  
Sbjct: 157 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFQNVQRTTRKKLPFGVCQIGKSFRNEITPGN 216

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +      Y R F R  L ++ M+ E   +  D S
Sbjct: 217 FTFRTREFEQMELEFF-CKPGTDMEWFQ-----YWRSFCRDWLLNLNMKEEHLRL-RDHS 269

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G T       F    +       D  ++ +         Y       +++ 
Sbjct: 270 PEELCFYSKGTTDFEFLFPFGWGELWGVADRTDYDLTQHQTTSGKDMTYF------DQET 323

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +         + G +   + +              G D K         G   +RVV  
Sbjct: 324 GEHYIPYVVEPSLGADRVTLAFL----VEAYDEEVVGQDKK---------GNDDVRVV-- 368

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     + +  ++APFK +++ + +  +V     +K+   LSK    V +DD G  
Sbjct: 369 ----------MHFHPALAPFKAAILPL-SKKEVLAGPAQKLRDELSKY-FMVDYDDTG-S 415

Query: 388 IGSQFAVADLLGFPLQVI-----VGSKFV-SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           IG ++   D +G P  +      VG +   +D+ V I+ R T  +  + +++V ++   +
Sbjct: 416 IGKRYRRQDEIGTPYCITLDFQTVGDENTPADNCVTIRDRDTMEQVRIPMDQVKSWLEEK 475

Query: 442 FS 443
            +
Sbjct: 476 LA 477


>gi|229584291|ref|YP_002842792.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|228019340|gb|ACP54747.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 484

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 168/507 (33%), Gaps = 99/507 (19%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIH-------QHSKGIYSWLPLGQKALDNV 53
           MR+      ++ ++    +I   +  LR   ++       ++  G   WLP G      +
Sbjct: 1   MRQYNKLSKMMSQSKSKQDI---ERFLRNFYVNSAEIYKGRNVSGFIDWLPPGAMLRQKI 57

Query: 54  NAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---------EMLRL------ 96
                    +       M   T+    ++  SG   ++              R+      
Sbjct: 58  IDSWINFFIKKIPNIFLMDGSTILPLSVFEASGHLANFTDPVIKCPKCSNTYRVDHLLKE 117

Query: 97  -----------ADRNDKAM-------------------IYGPTHEEVMTDIFRSHIKSYR 126
                       D  D+ +                      P   + +   F +      
Sbjct: 118 TNGKLICPRDLTDLKDQEIKQKSLMLELTVGLADEINAALRPETAQNIYINFMNFKAIGL 177

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-YNKMFVSYLRIF 185
            LPF   QI   +R+E+ PR    R REF+  +   F L    + H  Y+ +    L IF
Sbjct: 178 KLPFAIAQIGRSYRNEISPRGS--RLREFVQMEIEEFVLPFHLNSHPLYDNVKGIRLPIF 235

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +    ++I M        G + +  +      E          +  +P     F      
Sbjct: 236 YEE--QTIKMELNEAVKKGLVPNIRLAFWIGRE----WQWLTNELGLPGNKIRFR----- 284

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG- 304
             +  +  A Y+  +      + D   E    + R           T Y L + +   G 
Sbjct: 285 -IVPSEERAFYSKGTVDVEVNMEDDWVEIIGNAYR-----------TDYDLTVHSKHSGA 332

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-------GIIWPDSVAPFKISLINI 354
               +G   +V   S+G+   R+  AV+  ++D             P  +AP +I + +I
Sbjct: 333 NLSENGTIPHVIEPSFGLD--RIAIAVLLLNYDPNPSDRNWPLFRIPYKIAPLEIGIASI 390

Query: 355 KAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
              D+      EK+   L  +        + G +I +Q+A AD LG PL + + SK + +
Sbjct: 391 HHSDEYIN-IAEKVDLILRSLDYVTFKLFERG-KIDAQYAKADTLGIPLVITIDSKTLEE 448

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASH 440
           + V I++R T  +  +++ E+     +
Sbjct: 449 NTVTIRNRDTKAQIRVNIGEIAQAVKN 475


>gi|315612039|ref|ZP_07886956.1| histidine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315315841|gb|EFU63876.1| histidine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 426

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 142/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G+K + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIKGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKEAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++   L + G     D +  ++ +QF  AD+    + + +G   V  
Sbjct: 336 LG---EGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKILITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SL+ +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLDAINQNFSEIFEK 423


>gi|239627750|ref|ZP_04670781.1| glycyl-tRNA synthetase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517896|gb|EEQ57762.1| glycyl-tRNA synthetase [Clostridiales bacterium 1_7_47FAA]
          Length = 462

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 120/364 (32%), Gaps = 71/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y + +    LK++ ++ +         
Sbjct: 214 FTFRTREFEQMELEFFCKPDTDLE------WFAYWKQYCIDWLKALGIKED--------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D                   +  +            +  
Sbjct: 259 -EMRARDHEQEELSFYSKATTDLE----------------FLFPFGWGELWGIADRTDYD 301

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                  G   S      F     + +   +    +GA RV  A
Sbjct: 302 LTQHQNVS---------------GQDMS-----YFDDEAKEKYIPYVIEPSLGADRVTLA 341

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + I          +  ++AP K+ ++ +        +  EK+Y  LSK   +
Sbjct: 342 FLCAAYDEEEIGEGDVRTVLHFHPALAPVKVGVLPLSKK---LNEGAEKVYTELSKY-FN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  +        D  V ++ R T  +  + + E+ +Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSEEDHAVTVRDRDTMEQVRIPISELKDYF 456

Query: 439 SHRF 442
           + +F
Sbjct: 457 ADKF 460


>gi|168821504|ref|ZP_02833504.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205341920|gb|EDZ28684.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087017|emb|CBY96786.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 424

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 146/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGIAD-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD  G  + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGGKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|167752473|ref|ZP_02424600.1| hypothetical protein ALIPUT_00724 [Alistipes putredinis DSM 17216]
 gi|167659542|gb|EDS03672.1| hypothetical protein ALIPUT_00724 [Alistipes putredinis DSM 17216]
          Length = 518

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 115/365 (31%), Gaps = 75/365 (20%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M              +   P T + +  +           LPF   QI   FR+E+  R 
Sbjct: 201 MFSTQMGSTAEGANTIYLRPETAQGIFVNFLNVQKTGRMKLPFGIAQIGKAFRNEIVARQ 260

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F    E                                       
Sbjct: 261 FIFRMREFEQMEMQFFVRPGE--------------------------------------- 281

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A+  +T+    K        ++N  F D   L       T           E  
Sbjct: 282 -EMRWWAEWRDTR---MKWHRALGFGADNYRFHDHDKLAHYANAATDIEYNFPFGFKEVE 337

Query: 268 FDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                        GI     F      K+S      F    G+ +   +    IG  R+ 
Sbjct: 338 -------------GIHSRTDFDLSNHQKFSGKKIQYFDSETGESYVPYVVETSIGVDRMF 384

Query: 326 AAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             V+ +++  + +           P ++AP K++++ +   D    +  ++I   L K  
Sbjct: 385 LQVMSAAYTEEKLENGEERVVLRIPAALAPTKVAVLPLVKKD-GMPEVAQRIVDLL-KYD 442

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +D+  + +G ++   D +G PL V V  + + D+ V ++HR T  +E ++++ +  
Sbjct: 443 FNVVYDE-KDSVGKRYRRQDAIGTPLCVTVDGQTLEDNTVTVRHRDTMQQERVAIDALFG 501

Query: 437 YASHR 441
                
Sbjct: 502 LVDAE 506


>gi|259507795|ref|ZP_05750695.1| glycine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|59798591|sp|Q8FNG6|SYG_COREF RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|259164588|gb|EEW49142.1| glycine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 461

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 140/446 (31%), Gaps = 64/446 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +    +WV SG  + +     E L
Sbjct: 34  WDYGPLGVELKENIKRQWWRTMVTSRPDVVGVDTSVILPRQVWVTSGHVEVFTDPLVESL 93

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R     +     E+        H  +         +     +  E +   G++++ 
Sbjct: 94  HTHKRYRADHLLEAYEEKH------GHPPANGLADINDPETGQPGKWTEPKAFSGLLKTF 147

Query: 154 EFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
              + D      L PE ++  +            R+             IG    +E   
Sbjct: 148 LGPVDDEEGLHYLRPETAQGIFVNFKNVMNS--SRMKPPFGIA-----NIGKSFRNEITP 200

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                 T+ F   +   F  P E     D       ++     Y       +       P
Sbjct: 201 GNFIFRTREFEQMEMEFFVKPGE-----DEEWHQHWIDARHQWYIDLGVNPDNLRLYEHP 255

Query: 273 ENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKD 309
           + K    S R +++ + F F              T Y L + +   G D        G+ 
Sbjct: 256 QEKLSHYSKRTVDIEYAFNFANSKWGELEGIANRTDYDLRVHSEGSGEDLSYFDQETGER 315

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
               +     G  R +   +  ++                 +     +AP K++++ +  
Sbjct: 316 WIPYVIEPAAGLGRAMMVFLMDAYHEDEAPNSKGGVDKRVVLKLDRRLAPVKVAVLPLSK 375

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             ++     EK+ A L +   +V +D  G  IG ++   D +G P  V V    + D+ V
Sbjct: 376 KPELSGP-AEKLAAELRQFW-NVEYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAV 432

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++ R T  +  + L+E+  Y + + 
Sbjct: 433 TVRERDTMEQIRVPLDELQGYLAQQL 458


>gi|169832457|ref|YP_001695482.1| histidyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|229558747|sp|B1I9T7|SYH_STRPI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|168994959|gb|ACA35571.1| histidyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
          Length = 429

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVTLPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LG---EGANAKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFVAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|261403411|ref|YP_003247635.1| histidyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261370404|gb|ACX73153.1| histidyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 414

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 139/432 (32%), Gaps = 51/432 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           + Q  +G   +LP   K    V   +RE   R G  E+  PT +S +L   ++G  +   
Sbjct: 1   MFQKPRGTRDFLPEEMKKRRFVENKLREVFERYGYDEILTPTFESFELIAKKTG--EEIR 58

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K++    D   + M   P     +   + + +K+    P   Y     FR E RP+ G  
Sbjct: 59  KQLYVFKDHGGREMALRPEMTSPVVRFYLNELKN-LQKPLRLYYFANCFRYE-RPQAG-- 114

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R REF              +      +    +     +GL         G + G L    
Sbjct: 115 RFREFWQMGCELIGCKNAIADAE---VLNLAMDGLINIGLDFDVHIGHLGVLKGVLEEFN 171

Query: 209 ----------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                       I   D    +++ ++   +                  + E        
Sbjct: 172 VSEEEEVKIRRLIDKEDYENLEIYLTQILGEEKKELIFEILKFKGGKEILDELKEILKDF 231

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY- 317
              V      + + E        I  G     G  Y   M     G  G       G Y 
Sbjct: 232 PKSVEAVNNLEEILEFVIHDKYIINFGIAR--GLDYYTGMVFEIYGKKGAKQICGGGRYD 289

Query: 318 ------GIGAMRVVAAV-----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                 G  ++  V        I  + D         +   KI +I +K   ++ ++   
Sbjct: 290 NLIETFGNISVPAVGFAYGFDRIMMNIDD------LEIEEEKILVIPVKKDKELIKE-SL 342

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            I  +L K G  V +    E +G +       A+  GF   +IVG K +++ K+ +K  +
Sbjct: 343 LIANKLRKAGKIVEF----EIMGRKLRKALDYANSKGFKKVIIVGEKELNEGKITLKDMI 398

Query: 423 TGIREDMSLEEV 434
           TG ++ + + ++
Sbjct: 399 TGEQKLVDITDL 410


>gi|254173331|ref|ZP_04880004.1| histidyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214032740|gb|EEB73569.1| histidyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 435

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 136/437 (31%), Gaps = 65/437 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP        V   IRE   R    E+  PT +  +L+   SG  +   K++  
Sbjct: 7   KGTRDFLPEEMAKRRWVFERIREVFERYNFHEVLTPTFEYTELFKLRSG--EEVVKQLYA 64

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  ++ S  +     P  +Y +   FR E  P+ G  R REF
Sbjct: 65  FLDKGGRDISLRPDMTSSVARLYVSAFQ-TAPKPIKWYYMANMFRYEE-PQSG--RYREF 120

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                         +      +   +   +   GL+   +      +  + +    V  D
Sbjct: 121 WQAGVELIGSDRVEADAE---VIALFTESYLATGLEDFTVNIGDRVLLDEFAKMLGVKDD 177

Query: 216 TGETQVFCSKDF---MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---- 268
            G  ++   KD     +F     +    D      +                E+LF    
Sbjct: 178 IGLMRLIDKKDKLTKEEFVKALRDFGLSDEGVEKVLSLVEIKGEPNEVLPKAEELFTSEV 237

Query: 269 ------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----------- 305
                       D L          I++G    F    S+   A                
Sbjct: 238 AKAEIRRLYELVDLLEAYGVSKWIRIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGR 297

Query: 306 --------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    GK        + IG  R++  ++E     KG+I    + P  + +I I   
Sbjct: 298 YDNLIEVFGGKPTPA--TGFAIGVERLIP-ILEW----KGLIPEIKLRP-DVYVIPIGKE 349

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA-DLLG---FPLQVIVGSKFVSD 413
            +  R    ++ + L + G         E  G +   A D  G    P  V++G + + +
Sbjct: 350 VE-LRKTAVEVVSALRRAGVKADV----ELTGRKLRKALDYAGRLNVPYVVLIGKRDLEN 404

Query: 414 SKVEIKHRLTGIREDMS 430
             V I+   TG ++ + 
Sbjct: 405 GNVTIRDMETGEQKVVK 421


>gi|251810982|ref|ZP_04825455.1| glycyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876009|ref|ZP_06284876.1| glycine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|251805492|gb|EES58149.1| glycyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295034|gb|EFA87561.1| glycine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 463

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 124/366 (33%), Gaps = 72/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L  + +           S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASEWLTDLNI-----------S 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + + L D  E ++            +              +    +        H+E  
Sbjct: 257 EDNMRLRDHDEDELSHYS-------NATTDIEYKFPFGWGELWGIASRTDYDLRQHSEHS 309

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +                       KY  P          + +        +GA RV  A
Sbjct: 310 GEDF---------------------KYHDP-------ETNEKYIPYCIEPSLGADRVTLA 341

Query: 328 VIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +  ++  +G          + +  ++AP+K +++ +            KI+ +LS    
Sbjct: 342 FLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSSEAIKIFEQLSSS-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  +
Sbjct: 398 AIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELETF 456

Query: 438 ASHRFS 443
            + +  
Sbjct: 457 LAEKVK 462


>gi|27468170|ref|NP_764807.1| glycyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57867007|ref|YP_188708.1| glycyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|293366474|ref|ZP_06613151.1| glycine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38258360|sp|Q8CSD5|SYG_STAES RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|71153561|sp|Q5HNY2|SYG_STAEQ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|27315716|gb|AAO04851.1|AE016748_85 glycyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637665|gb|AAW54453.1| glycyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|291319243|gb|EFE59612.1| glycine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735209|gb|EGG71501.1| glycine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737405|gb|EGG73659.1| glycine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 463

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 124/366 (33%), Gaps = 72/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L  + +           S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASEWLTDLNI-----------S 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + + L D  E ++            +              +    +        H+E  
Sbjct: 257 EDNMRLRDHDEDELSHYS-------NATTDIEYKFPFGWGELWGIASRTDYDLRQHSEHS 309

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +                       KY  P          + +        +GA RV  A
Sbjct: 310 GEDF---------------------KYHDP-------ETNEKYIPYCIEPSLGADRVTLA 341

Query: 328 VIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +  ++  +G          + +  ++AP+K +++ +            KI+ +LS    
Sbjct: 342 FLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSSEAIKIFEQLSSS-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  +
Sbjct: 398 AIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELETF 456

Query: 438 ASHRFS 443
            + +  
Sbjct: 457 LAEKVK 462


>gi|217077192|ref|YP_002334910.1| histidyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|226737079|sp|B7IHK5|SYH_THEAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|217037047|gb|ACJ75569.1| histidyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 418

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 138/423 (32%), Gaps = 53/423 (12%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +++E     G  E+  P  ++ +L++ S     D   KEM    D+  +++   
Sbjct: 19  WYYIENVVKETVRLYGYSEIRTPIFEATELFIRSVGEETDIVQKEMYTFEDKGQRSITLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +      LP   + I   FR E RP+ G  R R+F            
Sbjct: 79  PEGTAPTIRAFIENSMMATGLPKRLFYIGPMFRYE-RPQKG--RQRQFHQFGVELIGSPS 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +      +     R+   LGL +  ++  S  IG D        A+          D 
Sbjct: 136 PLADAEAIIVAD---RVLKNLGLLNYTIKINS--IGCDK-----CRANYKNALKEYYSDK 185

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           +D+        + +   L  +  +    Y   +    + L D    +   + R ++   I
Sbjct: 186 LDYVCDDCKRRY-NTNVLRLLDCKVDVEYIKDAPKITDYLCDDCKHHYEETKRLLDNLKI 244

Query: 288 FYF-------GTKY--SLPMSATFKG------------------ADGKDHYVQMGSYGIG 320
            Y        G  Y   +                            G      +G + +G
Sbjct: 245 KYVEDPLLVRGLDYYNGVVFEIHHGDLGAQSAVGGGGRYDKLIKELGGSQTPSLG-FAMG 303

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++ A+     + K  +  + +   +I + ++    +  R    KI   L   G  V 
Sbjct: 304 IERLIIAL----KNEKIPV--EEIKNNEIFVAHLG---EQARIEALKIAEDLRDNGISVV 354

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +  M   + +Q   A  L   L VIVG   +  + V +++  TG + ++  + V+  A  
Sbjct: 355 FSTMERGLSAQLKHAARLKCKLCVIVGENELERNIVILRNMETGEQIEIERDYVVGTAKE 414

Query: 441 RFS 443
              
Sbjct: 415 WIE 417


>gi|148543336|ref|YP_001270706.1| seryl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184152746|ref|YP_001841087.1| seryl-tRNA synthetase [Lactobacillus reuteri JCM 1112]
 gi|227364408|ref|ZP_03848498.1| seryl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325683608|ref|ZP_08163124.1| serine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|166987314|sp|A5VHP5|SYS_LACRD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229890222|sp|B2G575|SYS_LACRJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148530370|gb|ABQ82369.1| seryl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183224090|dbj|BAG24607.1| seryl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070501|gb|EEI08834.1| seryl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324977958|gb|EGC14909.1| serine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 435

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 82/214 (38%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +AD    +G++  + + + ++  
Sbjct: 163 FVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFPKFKEGVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP     +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S     KM  +   I  +L L    +   +G +    S     E 
Sbjct: 280 FNKVEMVKY-TKPENSWDELEKMTANAENILKKLNLPYHVITLTTGDMSFTASETHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     +V    + +DF     +T + D   
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRMHTQYRDENG 372


>gi|194467495|ref|ZP_03073482.1| seryl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194454531|gb|EDX43428.1| seryl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 435

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 82/214 (38%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +AD    +G++  + + + ++  
Sbjct: 163 FVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFPKFKEGVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP     +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S     KM  +   I  +L L    +   +G +    S     E 
Sbjct: 280 FNKVEMVKY-TKPENSWDELEKMTANAENILKKLNLPYHVITLTTGDMSFTASETHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     +V    + +DF     +T + D   
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRMHTQYRDENG 372


>gi|304405768|ref|ZP_07387426.1| seryl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304345011|gb|EFM10847.1| seryl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 426

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   ++ G  E+  P + + D    +G+   + +++ ++A
Sbjct: 163 FVFYRGLGARLERALINFMMDLHSDKHGYEEILPPYIVNRDSLYGTGQLPKFEEDLFKIA 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +       PT E  +T+I R  I S   LP  F      FR E     R   G++R  
Sbjct: 223 DSD---YYLIPTAEVPVTNIAREEILSSEELPKYFVAYSACFRSEAGAAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +     + PE S      M  +  ++   LGL    +   +G +G   +     E
Sbjct: 280 QFNKVELLKL-VKPETSYDELEAMTANAEKVLELLGLPYRVLALCTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +     ++    +  DF     N  F
Sbjct: 339 VWLPSADTYREISSCSNVEDFQARRANIRF 368


>gi|300113469|ref|YP_003760044.1| histidyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299539406|gb|ADJ27723.1| histidyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 423

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 133/440 (30%), Gaps = 50/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  ++       G  E+ +P L+S +L+  S G   D   K
Sbjct: 5   QAIRGMNDLLPDQTPHWQRVEDVLSRVLASYGYQEIRLPLLESTELFRRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H           +     FR E RP+ G  R
Sbjct: 65  EMYTFIDRNGDSLTLRPEGTAGCVRSILQHGLLT-QGSLRLWYYGPMFRHE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHE 209
            R+F                     M     R + +LGL+ + ++  S   P       E
Sbjct: 121 YRQFYQIGVEVLGTEGPDVDAELILM---TARFWRQLGLQDLHLQINSLGSPAARIAYRE 177

Query: 210 FIVLADTGETQVFCSKDFMDFPIP------SENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +V   T    V                  S+N    +II+    +  +    +      
Sbjct: 178 RLVDFFTAHEDVLDEDSRRRLHSNPLRILDSKNPALHEIIARAPRLLDYLDDDSCAHFEA 237

Query: 264 NEKLFDSLPENKR---VSARGIEVGH-------IFYFGTKYSLPMSATFKG--ADGKDHY 311
            +   DS     +      RG++              G++ ++     + G         
Sbjct: 238 LQHTLDSAGIAYKINPRLVRGLDYYTRTVFEWVSDQLGSQGTVCAGGRYDGLVEQLGGQS 297

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKI 368
           +    + +G  R+VA + E              AP    L  +    Q  ++     E++
Sbjct: 298 IPAVGFALGLERLVALLGEQG---------RLQAPLPADLYLVAVGSQAEQESLLFAEQL 348

Query: 369 YARLSKVGCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG 424
              +      V         G  +     AD  G    +I+G   +    V +K  R   
Sbjct: 349 REAIPAARLQV-----NHGGGSFKSQLKRADRSGARWALILGEDEILQGTVSVKDLRQRK 403

Query: 425 IREDMSLEEVINYASHRFSN 444
            +E +  +++  Y   +  +
Sbjct: 404 PQELVPQDKLSAYIKQQLQS 423


>gi|227543803|ref|ZP_03973852.1| serine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300908871|ref|ZP_07126334.1| serine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227186218|gb|EEI66289.1| serine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300894278|gb|EFK87636.1| serine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 435

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 82/214 (38%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +AD    +G++  + + + ++  
Sbjct: 163 FVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFPKFKEGVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP     +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S     KM  +   I  +L L    +   +G +    S     E 
Sbjct: 280 FNKVEMVKY-TKPENSWDELEKMTANAENILKKLNLPYHVITLTTGDMSFTASETHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     +V    + +DF     +T + D   
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRMHTQYRDENG 372


>gi|15673949|ref|NP_268124.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|32130145|sp|Q9CE78|SYH_LACLA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|12725009|gb|AAK06065.1|AE006426_11 histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|326407504|gb|ADZ64575.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 430

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 139/435 (31%), Gaps = 59/435 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRY-DSYGK 91
           Q  KG    LP        +  I R   N     E+  P  +S +L+   +G   D   K
Sbjct: 4   QKPKGTADLLPAETAKWQYIEEIARGVFNDYNFKEIRTPMFESYELFSRATGETSDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-----FTFYQIQLKFRDELRPR 146
           EM    D+  + +   P   E      R++I++    P        +     FR E RP+
Sbjct: 64  EMYDFEDKGGRHIALRP---EGTASAVRAYIENKLYAPEVVKPVKLWYDAPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F         +           M  +   +F +LG+  + +   +       
Sbjct: 120 SG--RLRQFHQFGVECLGVKNPAVDVEIIAMADT---LFRQLGITGLKLALNTLGDMESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P    LS +     +    +V  SK+  D  I        D ++  S 
Sbjct: 175 MAYRQALIDYLTPFENQLSEDSRRRLNENPLRVLDSKEAEDIAIVKNAPAILDYLNEASK 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP---------MS 299
                   A    +H E   D                 IF F   +              
Sbjct: 235 AYFEEVK-ALLEALHIEYTIDPNMVRGLDYYN----DTIFEFIVDFDGKDLTVCGGGRYD 289

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +  DG         +G+G  R++  +I    +   I  P+      + +  +    +
Sbjct: 290 GLVEYFDGPATPAF--GFGLGIERLL--MIAQKQEINFI--PEET--LDVYIAVMG---E 338

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  K+   L +    V  D    ++G+QF  A+ LG  L + +G   +   ++++K
Sbjct: 339 KANLEATKLAESLREQAFKVERDFSNRKLGAQFKTAEKLGAELIITLGEDEIRTGQIKVK 398

Query: 420 HRLTGIREDMSLEEV 434
           H  T  + + +L+ V
Sbjct: 399 HNQTRKQVETTLKAV 413


>gi|209919991|ref|YP_002294075.1| histidyl-tRNA synthetase [Escherichia coli SE11]
 gi|293446867|ref|ZP_06663289.1| histidyl-tRNA synthetase [Escherichia coli B088]
 gi|331669260|ref|ZP_08370108.1| histidine--tRNA ligase [Escherichia coli TA271]
 gi|229558664|sp|B6I586|SYH_ECOSE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|209913250|dbj|BAG78324.1| histidyl-tRNA synthase [Escherichia coli SE11]
 gi|291323697|gb|EFE63125.1| histidyl-tRNA synthetase [Escherichia coli B088]
 gi|323944736|gb|EGB40803.1| histidyl-tRNA synthetase [Escherichia coli H120]
 gi|324020074|gb|EGB89293.1| histidyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|331064454|gb|EGI36365.1| histidine--tRNA ligase [Escherichia coli TA271]
          Length = 424

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 131/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     + +  K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQYKDKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|33322957|gb|AAQ07215.1|AF496523_1 prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis]
          Length = 105

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%)

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPRFG++R REF+M D YSF  + E     ++    +YL+IF R G++  P+ A+SG
Sbjct: 1   DENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDNEKAAYLKIFKRTGVEVRPVIADSG 60

Query: 201 PIGGDLSHEFIVLADTGETQVF 222
            +GG  S EF   A  GE  + 
Sbjct: 61  TMGGKNSIEFQAPAAVGEDTIA 82


>gi|227824346|ref|ZP_03989178.1| histidyl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226904845|gb|EEH90763.1| histidyl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 420

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 152/441 (34%), Gaps = 55/441 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP        V +++R+        E+  P  +  +L+        D 
Sbjct: 1   MLTTAPRGTKDILPGAVNGWRYVESVLRDVCREFNYQEIRTPIFEHTELFQRGIGDGTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR+ +++   P +   +   F  +      +P   + I   FR + RP+ G
Sbjct: 61  VDKEMYTFNDRSGRSITLRPENTAAVVRSFVENKLYAEPMPLKVFYIGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------- 199
             R R+F      +                +  + +  RLGLK + ++  S         
Sbjct: 120 --RMRQFHQFGVEAMGSPSPVVDAET---ILLAITVLKRLGLKDLKLKINSVGCPKCRPQ 174

Query: 200 ---------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                     P   +L  +     D    ++   K   D P  +      D     S+ E
Sbjct: 175 HRTLLQDYFRPHLKELCEDCQSRFDRSPLRILDCKVDHDKPFMAGAPKITD-----SLCE 229

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT--------F 302
           +    +     + +E   D   ++     RG++      +  +YS P+ A         +
Sbjct: 230 ECHDHFEMVKKLLDEAGVDYEVDSTL--VRGLDYYTKTAYEVQYS-PLGAQSAVGGGGRY 286

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G     G      +G + +G  R++ A+     + +G++  +  A    +++     D+
Sbjct: 287 DGLVEELGGPSTPGVG-FAMGLERIILAL-----EKQGLLKSEKEAIDVFAVVP----DE 336

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  K    L + G     + +G  + +Q   AD  G    +I G +  S   V ++
Sbjct: 337 GGTADAFKAVMTLREAGYSCDMNQIGRSMKAQMKQADRAGARFALIFGEEERSRGAVTVR 396

Query: 420 HRLTGIREDMSLEEVINYASH 440
           +     +E++   E+++Y   
Sbjct: 397 NMADSSQEEIKRSEIVSYMKK 417


>gi|26553794|ref|NP_757728.1| glycyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|59798587|sp|Q8EW64|SYG_MYCPE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|26453801|dbj|BAC44132.1| glycyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 462

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 124/370 (33%), Gaps = 73/370 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRF 147
           M   +    D     +   P   + +   F++  ++ R  LPF   QI   FR+E+ P  
Sbjct: 150 MFDTSIGVVDDKKDLVYLRPETAQGIFINFKNIQRTQRQKLPFGVGQIGKAFRNEITPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    +       K+F ++L        K++ +   +  I     
Sbjct: 210 FIFRTREFEQMEIEYFCDKKDSP-----KVFDNFLESIKTFLFKTLKIHENNIKIIDYPK 264

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    +      ++                             +   Y+    + +   
Sbjct: 265 EELAHYSSRTVDFLYN----------------------------FPHGYSELWGLADRGE 296

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
           FD                      +K SL     +   + K+ +   +    +G  R++ 
Sbjct: 297 FDL---------------TAHQNLSKKSL----EYLNEETKEKFVPSVIEPSVGVERLLY 337

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A++  ++D + I              +AP+K +++ +        D  E+I+  L     
Sbjct: 338 AILIDAYDEEKIDEENNRVVLKLIPELAPYKFAVLPLSNK---LNDKAEEIFNNLILSNI 394

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV-IN 436
             +  D    IG ++   D +G P  + V    + D  V I+ R +  +  + ++++ ++
Sbjct: 395 CTY--DSSGSIGKRYRRQDAIGTPYCITVDFDTLEDECVTIRDRDSMKQIRIKIKDIDLS 452

Query: 437 YASHRFSNNR 446
                F N +
Sbjct: 453 KVQELFKNAK 462


>gi|301168127|emb|CBW27713.1| Glycyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 440

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/480 (14%), Positives = 139/480 (28%), Gaps = 118/480 (24%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSA 77
           L  R G I Q S   G     + + P G +  +NV     +        + +        
Sbjct: 15  LCKRRGFIFQSSEIYGGLGSCWDYAPYGIQLKNNVKESWWKAMTFREDVVGIDASIFMHP 74

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAM--------------------------------- 104
            +W  SG  D +   M+      ++                                   
Sbjct: 75  MVWKASGHVDGFSDPMVDCKSCKERYREDQIDTSKPCAKCGATDFTEPRDFNLMFNTQMG 134

Query: 105 ---------IYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                       P T + +  +         + LPF   QI   FR+E+ P   + R+RE
Sbjct: 135 AVTDSSSTVYLRPETAQGIFVNFLNVQQTMRKKLPFGIAQIGKAFRNEITPGNFIFRTRE 194

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F                                      +       +    
Sbjct: 195 FEQMEMQFFVKPGTQLD-----------------------------AMEKWKEVRWQWHI 225

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D G       K   +   P     + D  +   I  ++   +     +H+   FD     
Sbjct: 226 DNGLRA---EKLRWEPHGPDSLAHYADAAT--DIEYEFPMGWGEMEGIHSRTDFDLKRH- 279

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHY-VQMGSYGIGAMRVVAAVIESS 332
                             ++S   +  +    DG   Y   +    +G  R V A++  +
Sbjct: 280 -----------------EEFSKK-NLKYLDTEDGNKKYLPYVLETSVGCDRAVLALLCDA 321

Query: 333 HDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           +  +           + +   +AP K++++ +    +       K++  + K      +D
Sbjct: 322 YRLENEGDKENERVVMKFHPKIAPIKVAVLPL-VKKEKLDTPARKLFETIQK-NYQAEYD 379

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G  IG ++   D +G PL V      + D+ V ++ R T  +E ++++++  Y   + 
Sbjct: 380 VAG-SIGKRYRRQDEIGTPLCVTFDFDTLDDNAVTVRDRDTMTQERVAIDQLDKYLRDKL 438


>gi|160915037|ref|ZP_02077250.1| hypothetical protein EUBDOL_01045 [Eubacterium dolichum DSM 3991]
 gi|158432836|gb|EDP11125.1| hypothetical protein EUBDOL_01045 [Eubacterium dolichum DSM 3991]
          Length = 461

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 125/367 (34%), Gaps = 74/367 (20%)

Query: 93  MLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +     L D  +   +   T + +  +         + LPF   QI   FR+E+ P  
Sbjct: 152 MFKTFQGVLEDAKNAIYLRPETAQGMFVNFKNVQRTMRKKLPFGIGQIGKSFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            + R+REF   +   F    T     H Y +     ++    LG++   +R         
Sbjct: 212 FIFRTREFEQMELEFFCEPGTDLDWYHYYKEFC---MKFLTDLGIQREHLRFRD------ 262

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                     T E   F SK   D      +      +   +    +       +   + 
Sbjct: 263 ---------HTPEELAFYSKGTCDIEYNFHSQIGWGELWGIADRTDYDLKQHMETSKKSL 313

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +  D    N++     IE                                   +G  R++
Sbjct: 314 EYLDPT-TNEKYIPYCIE---------------------------------PSVGVERML 339

Query: 326 AAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-VG 376
            AV+  ++D + +         +   +AP K  ++ +        D   ++Y +++    
Sbjct: 340 LAVMCDAYDEEQLENDTRIVMHFHPYLAPIKACVMPLSKK---LGDKAMEVYGKIAHVAN 396

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           CD  +DD G  IG ++   D +G P  V +  +  +D  V ++HR +  +E +++E++ +
Sbjct: 397 CD--YDDAG-SIGKRYRRQDAIGTPFCVTIDFETENDGCVTVRHRDSMEQERVAIEDLAS 453

Query: 437 YASHRFS 443
           Y   R  
Sbjct: 454 YIEERIK 460


>gi|157149956|ref|YP_001451310.1| histidyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189082316|sp|A8AZV0|SYH_STRGC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157074750|gb|ABV09433.1| histidyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 426

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 138/429 (32%), Gaps = 47/429 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYVEEFARETFRKYNYAEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF    A  F  +   +      M     + F  +G+ ++ +   +       
Sbjct: 120 AG--RLREFHQIGAECFGSSNPATDVE---MIAMAAQFFKEIGITNVSLELNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKASLSADSQRRLEENPLRVLDSKEPEDKVAVEGAPSILDYLDEESS 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
                      +      +  ++          I        G++ ++     + G    
Sbjct: 235 AYFAAVRSMLETLQIPYVINTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAY 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +     D +G+  P  +      +  + A         
Sbjct: 295 FGGPETPGVG-FGMGLERLLLVL-----DKQGVELPIEMG-LDAYIAVLGAG---ANGKA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D +  +I +QF  AD+      + +G   +   ++ +K+ +T  
Sbjct: 345 LELVQSLRAQGFAAERDYLDRKIKAQFKSADIFQAKTIITLGESELESGELTVKNNVTRQ 404

Query: 426 REDMSLEEV 434
              ++ E +
Sbjct: 405 EVTVAFEAI 413


>gi|313888744|ref|ZP_07822408.1| histidine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845302|gb|EFR32699.1| histidine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 435

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 146/445 (32%), Gaps = 60/445 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +  IIR+   + G + +  P ++ +++ +  G  ++  K++ R 
Sbjct: 10  PGFMELLPKDQILFNEMKDIIRKNFEKHGFLPIDTPVIEKSEVLLAKGGGET-EKQIYRF 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           + + D  M        V    +     +  + PF  YQI   +R E + + G  R REF 
Sbjct: 69  S-KGDTDMSLR-FDLTVPLARYTVEHMNDLSFPFKRYQIGKVYRGE-KAQKG--RFREFY 123

Query: 157 MKDAYSFDLTPEGS--KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG---------- 204
             D  +  +          +  +       F  LG     +   +  I            
Sbjct: 124 QCDIDTIGMGELSLVNDAEFPVVI---FHTFKDLGFTDFTIHLNNRKILKGFFSSLGIED 180

Query: 205 -----------DLSHEFIVLADTGET-------QVFCSKDFMDFPIPSENTDFDDIISLN 246
                      D   E  VL + GE        +       +   +        D+   +
Sbjct: 181 SMNVLRTVDKLDKIGEESVLEELGENGIGRDSGEKILEFIKIKGSVDEILEQLRDLKIKD 240

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--- 303
            I ++             +   D    +       I  G  +Y GT Y   +    K   
Sbjct: 241 EIFQEGLDELTQVVGYMRDFGIDEDCFD---IDLKIARGLDYYTGTVYETTLDNYPKIGS 297

Query: 304 ------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
                   D   +Y      G+G    ++ +    ++ K II  +  +   + +I +   
Sbjct: 298 VCSGGRYEDLASYYTDKTLPGVGISIGLSRLFYQLNEAK-IISSEEKSLVDLLIIPMDDC 356

Query: 357 -HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            HD +      K+ + L + G  V       ++  +F  AD       +++G + +   K
Sbjct: 357 IHDGI------KLLSELREKGVRVSVYTEFAKLKKKFKYADQTKVDYVIVLGEEEIKTRK 410

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
             +K   TG +E+++ +E++     
Sbjct: 411 YSLKDMKTGDQEEVTFDELVERFKK 435


>gi|54307959|ref|YP_128979.1| histidyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|50403647|sp|P62373|SYH_PHOPR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46912385|emb|CAG19177.1| putative histidyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 422

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 138/442 (31%), Gaps = 58/442 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   I++  +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSALWQKVEGTIKQVVSAYGYNEIRMPIVESTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIQNGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQVGVEVFGLNGPDVDAELIMM---TARLWRELGINQ-HVRLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E  +   +  ++                    +               +  D  
Sbjct: 173 ARATYREALIAFLEQHLEVLDEDCKRRMHTNPLRVLDTKNPAVQEILVDAPKLSEYLDDD 232

Query: 272 ------PENKRVSARGIEVGHIFYF--GTKY-----------SLPMSATFKGA------- 305
                    + + A GIE         G  Y           SL    T  G        
Sbjct: 233 SKAHFAGLCELLDAAGIEYQVNERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLV 292

Query: 306 ---DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               GK        + +G  R+V  ++  + +   +    SV  + +++       +   
Sbjct: 293 EQLGGKATPAV--GFAMGVERLV--LLMETLELADVR--RSVDAYVVTV------GEGTM 340

Query: 363 DACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            A  K+  +L +   G  V     G     QF  AD +G  + +++G   ++D+ V +K 
Sbjct: 341 MAGMKLAEKLRENVPGLRVMNHFGGGNFKKQFKRADNVGAAIALVLGENEIADNTVVVKD 400

Query: 421 RLTGIREDMSLEEVINYASHRF 442
              G +  M+ +EV    +   
Sbjct: 401 LRGGEQTTMAQDEVTAKLAELI 422


>gi|313665727|ref|YP_004047598.1| serine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949962|gb|ADR24558.1| serine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 422

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 106/312 (33%), Gaps = 70/312 (22%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K + ++  ++ +   + G  E+  P + +  + + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRSIADVLLKRHEKHGYKEIFCPLIVNKSVMLGTGQLPKFSEDMYQVG--- 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 225 --EQYLIPTSEVPLTNLHANEILTYDVLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +     + PE S +    +      + +   L    +   SG IG          A T
Sbjct: 283 KVELVKI-VHPEESMNELEMLIKDAEDVLNMFDLPYRVVELCSGDIGFSS-------AKT 334

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            + +V+  +      I S +                                        
Sbjct: 335 YDLEVWFPEQNKYREISSCSNC-------------------------------------- 356

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDG 335
                      F      +  M   FK  D K   V  +   G+   R++AA++E+  DG
Sbjct: 357 ---------TDFQ-----ARNMQTRFKDKDSKIKLVHTLNGSGVAVDRLIAAILENYWDG 402

Query: 336 KGIIWPDSVAPF 347
           + +I P  + P+
Sbjct: 403 EKLILPTLLRPY 414


>gi|310643536|ref|YP_003948294.1| histidyl-tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309248486|gb|ADO58053.1| Histidyl-tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 414

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 142/434 (32%), Gaps = 47/434 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q   G    LP   +    V    RE   R    E+  P  +  +L+V       D 
Sbjct: 1   MAFQKPTGTQDLLPGSVEKWQVVEEKAREISRRFNYREIRTPMFEQTNLFVRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  ++M   P     +   +  +           Y I   FR E RP+ G
Sbjct: 61  VEKEMYTFEDKGKRSMTLRPEGTAGVVRSYVENKLYGEPDVTKLYYIGPMFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPI 202
             R R+F      +F                 + R    LGLK + +       A S   
Sbjct: 120 --RQRQFHQFGIEAFGAMDPALDAEVIAFGYQFCR---ELGLKGVQVEINSVGNAASRAA 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F++      T+   ++   +     ++ D  D       +       ++T   
Sbjct: 175 YRQHLVDFLMPIKDTLTKESQARIERNPLRVLDSKDDQDKFGGAPSILDSLDEESSTHFE 234

Query: 263 HNEKLFDSLPENKR---VSARGIEVGHIFYF---------------GTKYSLPMSATFKG 304
             ++  D++           RG++   +  F               G +Y    +     
Sbjct: 235 KVKQNLDAMGVEYTVNPRLVRGLDYYTLTAFEFKAEGIGAIDTIGGGGRY----NGLVGD 290

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G D       +GIG  R+   +I      K     +   P  I ++ +    +   + 
Sbjct: 291 LGGPDQPGI--GFGIGLERI--QLILEHQGVK----LNEAKPLDIYMVALGEAAET--EV 340

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++++ +L + G     D +G ++ +Q   AD        I+G   +   ++ +K+  TG
Sbjct: 341 TKQLF-KLRQAGFSAERDYLGRKMKAQMKSADRFKARYTAILGDDELVKGEIALKNMETG 399

Query: 425 IREDMSLEEVINYA 438
            +  + L++++   
Sbjct: 400 EQRTVKLDQLVEEL 413


>gi|313633167|gb|EFS00051.1| histidyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 427

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 142/442 (32%), Gaps = 46/442 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        + A            E+  P  +  +L+        D   K
Sbjct: 2   QLPRGTRDILPEEVTKWHFLEAAFAAVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSK 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVM 150
           EM    D+  +++   P     +   F  H        P   Y  +  FR E RP+ G  
Sbjct: 62  EMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGAVSQPIKMYYNEPMFRYE-RPQGG-- 118

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS--- 207
           R R+F      +              +    +  F R+GL++I +   S  +G   S   
Sbjct: 119 RQRQFTQMGIEAIGSDDPAIDVE---VISLAMEFFKRIGLRNIKLVINS--LGDKESRLK 173

Query: 208 -------------HEFIVLAD----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-V 249
                         EF             ++   K   D P+        D ++  S+  
Sbjct: 174 HREALVSHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQTAPSILDYLNEESVAY 233

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG---A 305
                 Y    ++  E     +      +    E+      FG K +L     + G    
Sbjct: 234 FNQVQSYLNALEISFEIDPTMVRGLDYYNHTTFEIMSEEEGFGAKTTLCGGGRYHGLVKE 293

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +GIG  R++ A+     D K    P    P ++ +I  +   ++     
Sbjct: 294 FGGPDTPGIG-FGIGVERILLAL--EKADVK---IPAK-KPLEVYVITAQPEAEL---KA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +  +L K G     D +  ++ +Q   A+       +I+G + +     ++K+  TG 
Sbjct: 344 VTLVNKLRKNGISAEKDYLKRKLKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGE 403

Query: 426 REDMSLEEVINYASHRFSNNRP 447
           +E +  + +      + +N + 
Sbjct: 404 QEIVFEDTLETVLIEKLTNTKE 425


>gi|227536433|ref|ZP_03966482.1| glycine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243809|gb|EEI93824.1| glycine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 489

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 122/367 (33%), Gaps = 74/367 (20%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M        AD  ++  +   T + +  +           +PF   QI   FR+E+  R 
Sbjct: 170 MFATQMGAMADGAEQVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEVIARQ 229

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            +MR REF   +   F   P      YNK   + L+    LG      R           
Sbjct: 230 FIMRMREFEQMEMQFF-CRPGTEMEWYNKWKETRLKWHLALGFNPDNYR----------Y 278

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+   LA      V                          I   +   +     +H+   
Sbjct: 279 HDHDKLAHYANAAV-------------------------DIEFNFPFGFKEVEGIHSRTD 313

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                       ++S      F     +++   +    IG  R+   
Sbjct: 314 FDLKQH------------------QEFSKKKMQYFDTEINQNYIPYVVETSIGLDRLFLT 355

Query: 328 VIESS-------HDGKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           V+ +S        D K      + +P ++AP K +++ +   D    +   +I A L K+
Sbjct: 356 VLCNSLVQEDLSTDEKQDSRVVLKFPPALAPVKAAILPLTKKD-GLPEKAREIMAAL-KL 413

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +V +D+    IG ++   D +G P  + V  + + D+ V I+ R T  +E +++ ++ 
Sbjct: 414 DYNVQYDEKDA-IGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRDRDTMKQERVAIADLE 472

Query: 436 NYASHRF 442
              S   
Sbjct: 473 RIVSELV 479


>gi|270291756|ref|ZP_06197972.1| histidine--tRNA ligase [Streptococcus sp. M143]
 gi|270279841|gb|EFA25682.1| histidine--tRNA ligase [Streptococcus sp. M143]
          Length = 426

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 144/444 (32%), Gaps = 57/444 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D           DF D  S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 246 NSIVEQWTAPYA----ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSA 300
                              D +  +  D           GIE   +    G +Y   + A
Sbjct: 235 AHFDAVRQMLETLGVDYIIDTNMVRGLDYYNHTIFEFITGIEGNDLTVCAGGRY-DGLVA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G +          +G+G  R++  +     + +G+  P   A   + +  +     V
Sbjct: 294 YFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAVLGQGANV 342

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L + G     D +  ++ +QF  AD+      + +G   V   +V++K+
Sbjct: 343 ---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVKVKN 399

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             T    +++L+ +    S  F  
Sbjct: 400 NQTREEVEVTLDTISQNFSEVFEK 423


>gi|55821938|ref|YP_140380.1| histidyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55823857|ref|YP_142298.1| histidyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|81676488|sp|Q5LXM9|SYH_STRT1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81676641|sp|Q5M281|SYH_STRT2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|55737923|gb|AAV61565.1| histidine-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55739842|gb|AAV63483.1| histidine-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 426

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 135/430 (31%), Gaps = 49/430 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDSAKWQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F+ LG+K + +   S       
Sbjct: 120 AG--RLREFHQLGVECFGSKNPATDVETIAM--AYQ-LFNTLGIKDVTLHLNSLGNTDSR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 LAYRQALIDYLTPMRESLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A    ++   + D+                IF F T           G  G+
Sbjct: 235 THFDEVR-AMLDSLNIPYVIDTNMVRGLDYYNH----TIFEFITNIDKSELTICAG--GR 287

Query: 309 DHYVQMGSYGIGA----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +     G         +    +    D +GI  P   +   + +  + +        
Sbjct: 288 YDSLVEYFGGPETAGFGFGLGLERLLLVLDKQGIKLPVEES-LDVYIAVLGSG---ANGK 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   +   G     D +G +I +QF  AD       + +G   V    V++K+  T 
Sbjct: 344 ALELVQSIRYQGFKAERDYLGRKIKAQFKSADTFKAKTVITLGESEVESGVVKVKNNATR 403

Query: 425 IREDMSLEEV 434
               +S EE+
Sbjct: 404 EEVTVSFEEL 413


>gi|116512890|ref|YP_811797.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|122939953|sp|Q02WI8|SYH_LACLS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116108544|gb|ABJ73684.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 430

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 140/431 (32%), Gaps = 51/431 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRY-DSYGK 91
           Q  KG    LP        +  I R   N     E+  P  +S +L+   +G   D   K
Sbjct: 4   QKPKGTADLLPAETAKWQYIEEIARGVFNDYNFKEIRTPMFESYELFSRATGETSDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDELRPR 146
           EM    D+  + +   P   E      R++I++         P   +     FR E RP+
Sbjct: 64  EMYDFEDKGGRHIALRP---EGTASAVRAYIENKLYAPEVVKPVKLWYDAPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F         L           M  +   +F +LG+    ++     +G   
Sbjct: 120 SG--RLRQFHQFGVECLGLKNSAVDVEIIAMADT---LFRQLGIS--GVKLSLNTLGDME 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +    A       F ++   D            + S  +          A  D  NE 
Sbjct: 173 SRKAYRQALIDYLTPFENQLSEDSRRRLNENPLRVLDSKEAEDIAIVKNAPAILDYLNET 232

Query: 267 LFDSLPENK-----RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG------ 315
                 E K           I+   +      Y+  +       DGK+  V  G      
Sbjct: 233 SKAYFEEVKALLEALNIEYTIDSNMVRGL-DYYNDTIFEFIVNFDGKELTVCGGGRYDGL 291

Query: 316 ------------SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                        +G+G  R++  +I    +   I  P+      + +  +    +    
Sbjct: 292 VEYFDGPATPAFGFGLGIERLL--MIAEKQEINFI--PEET--LDVYIAVMG---EKANL 342

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L +    V  D    ++G+QF  A+ LG  L + +G   V   ++++KH  T
Sbjct: 343 EATKLAESLREQAFKVERDFSNRKLGAQFKTAEKLGAELIITLGEDEVRTGQIKVKHNQT 402

Query: 424 GIREDMSLEEV 434
             + + +L+ V
Sbjct: 403 RKQVETTLKAV 413


>gi|238852664|ref|ZP_04643074.1| histidine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|238834810|gb|EEQ27037.1| histidine--tRNA ligase [Lactobacillus gasseri 202-4]
          Length = 428

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 152/447 (34%), Gaps = 80/447 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    + + V  I R    R    E+  P+ ++ +++  S     D   K
Sbjct: 4   QRPKGTVDILPAESGSWEKVETIARNFFKRANYREIRTPSFENYEVFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDELRPR 146
           EM    D+  + +   P   E    + R+++++         PF  Y I   FR E RP+
Sbjct: 64  EMYDFNDKGGRHIALRP---EGTAGVVRAYVENKLYGPGVVKPFNVYYIDNTFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF      SF      +      M      +   LG+K+  +   +       
Sbjct: 120 AG--RQREFHQIGVESFGSNSPLADVETIMMG---HDLLAELGVKNYELHINTLGNAQVR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   +S +          ++  SK   D     +     D +  +S 
Sbjct: 175 KDYRDALVNYFTPLKDQISEDSQRRLSMNPLRILDSKAEEDKQFLPDAPRIVDYLDEDSK 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF---------------- 290
               T          N  L D          RG++   G IF F                
Sbjct: 235 KNFETITDMLEQLGINYVLDD-------DLVRGLDYYTGVIFEFMVEDKNLWESAITILG 287

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPF 347
           G +Y+       +  DG +       +GIG  R++  + E +    + +GI         
Sbjct: 288 GGRYNH----LVEEFDGPETPAV--GFGIGEERLMLVLKEQNPALFEDEGI--------- 332

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
              + NI    ++      +I   L K G    +D   +++  QF  AD +     + +G
Sbjct: 333 DFFITNIGEGTEM---KTVEIARSLRKQGFKAQYDVDQKKLKQQFRKADRVHAKFVITLG 389

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +K + +  + IK    G   D+SLE++
Sbjct: 390 AKELENGVLNIKRLADGKTLDLSLEDL 416


>gi|260903902|ref|ZP_05912224.1| glycyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 459

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 78/519 (15%), Positives = 156/519 (30%), Gaps = 139/519 (26%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV-----NA 55
           M +SK     L      A+      + + G I+  S+  + + PLG +  DN+       
Sbjct: 1   MAQSK-----LDAVIALAKRRG--FVFQAGEIYGGSRSAWDYGPLGVELKDNIKAQWWQT 53

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIY------ 106
            +R  ++  G   +    +    +W  SG   ++     E L    R+ +  +       
Sbjct: 54  FVRGREDVVG---LDSSVILPKRVWEASGHVATFVDPLVECLSCHKRHREDHLVEAYEAK 110

Query: 107 ---------------------GPTHEEVMTDIFRSHI----------------------- 122
                                  T  +  + + ++ +                       
Sbjct: 111 HSKAPENGMADIVCPDCGNRGQWTEPQEFSGLVKTFLGPVESEAGLNYLRPETAQGIFVN 170

Query: 123 ------KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
                  + +  PF   QI   FR+E+ P   + R+REF   +   F + P+ +   Y +
Sbjct: 171 FNNVVTAARKKPPFGIGQIGKAFRNEITPGNFIFRTREFEQMELEYF-VRPDEADDYYRE 229

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +    F  LG+                S + +   D  E                  
Sbjct: 230 WVEACWNWFLDLGI----------------SEDNVRRLDVPEDDRAHYSSGTIDV----E 269

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             F    S    +             H E     L    + S                  
Sbjct: 270 YRFGFQGSEWGELMGVANRTDYDLGTHTEASGAKLQYFDQAS------------------ 311

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDS 343
                     G+     +     G  R + A +  ++                 +     
Sbjct: 312 ----------GERFTPYVIEPSFGLTRSMMAFLIDAYTEDEAPNTKGGVDKRIVLKLDPR 361

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP K +++ + + ++      +++ ARL K   ++ +DD G  IG ++   D +G PL 
Sbjct: 362 LAPVKAAVLPL-SRNEKLSPQAKELAARLRK-RWNIDFDDAGA-IGRRYRRQDEVGTPLC 418

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +      + D+ V I+ R    +E +S+++V NY +   
Sbjct: 419 ITFDFDSLDDNAVTIRKRDDMSQERVSIDQVENYLAEHL 457


>gi|302869265|ref|YP_003837902.1| glycyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302572124|gb|ADL48326.1| glycyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 459

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 150/443 (33%), Gaps = 59/443 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + +  +W  SG    +      L 
Sbjct: 33  WDYGPLGVELKENVRRQWWRTMVQQRDDVVGLDSAVILARKVWEASGHIAEFVD---PLT 89

Query: 98  DRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-EF 155
           +       +   H EE         + S   L       +  F  E +   G+M++    
Sbjct: 90  ECQSCHKRFRADHLEEAYEAKHGKPLTSLTELNCPNCGNKGTF-TEPKMFNGLMKTYLGP 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  D     L PE ++     +FV+Y  +          +  +  P G   + +      
Sbjct: 149 VESDEGMHYLRPETAQ----GIFVNYKNV--------ETVARKKPPFGIAQTGKSFRNEI 196

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T    +F +++F    +        D       + +    Y           F   P+ K
Sbjct: 197 TPGNFIFRTREFEQMEMEFFVEPGTDEQWHEYWLSERWNWYLDLGLSEENLRFYEHPKEK 256

Query: 276 --RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYV 312
               S R +++ + F FG             T + L   +   G D        G+    
Sbjct: 257 LSHYSKRTVDIEYRFRFGGSEFAELEGIANRTDFDLATHSKHSGVDLSYFDQGKGERWMP 316

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R V A +  ++D                + +   +AP K++++ + + ++
Sbjct: 317 YVIEPAAGLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPL-SRNE 375

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++   L K    V +DD    IG ++   D +G P  V V    + D+ V ++
Sbjct: 376 ALSPKAKQLATDLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVR 433

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           +R T  +E +SL++V  Y   R 
Sbjct: 434 NRDTMTQERVSLDQVERYLIERL 456


>gi|58700029|ref|ZP_00374583.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533457|gb|EAL57902.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 121

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 2/112 (1%)

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF SH +SYR+LP    +     R+E      G+MR R F   DA+ F +  E     
Sbjct: 1   MQIFNSHTRSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCM-EEQVNSE 59

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             K       ++  LG   I ++    P       E    A+    +     
Sbjct: 60  TIKFCDLLKEVYSELGFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAVKEA 111


>gi|222151464|ref|YP_002560620.1| glycyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|254781879|sp|B9E6V6|SYG_MACCJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|222120589|dbj|BAH17924.1| glycyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 462

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 120/368 (32%), Gaps = 77/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTESSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIAQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            + R+REF   +   F     E     Y K F +  +    LG+K               
Sbjct: 214 FIFRTREFEQMELEFFCKPGTEIEWQEYWKNFAA--KWLKDLGIK--------------- 256

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E   L D  E ++                 + +  +       +            + 
Sbjct: 257 -EENTKLRDHDEDELSH---------------YSNATTDIEYKFPFGWGELWGIASRTDF 300

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVV 325
              +                    G  +S      +   +  + +        +GA RV 
Sbjct: 301 DLKAHMAAS---------------GDDFS------YHDQETNEKYVPYCIEPSLGADRVT 339

Query: 326 AAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            A +  +++ + +          +  ++AP+K +++ +            K+Y  LS   
Sbjct: 340 LAFLCDAYEEETLEGGDSRTVMRFHPALAPYKAAILPLSKK---LSPDAMKVYEALSA-- 394

Query: 377 CDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            D   D D  + IG ++   D +G P  +      + D++V ++ R T  +  M + EV 
Sbjct: 395 -DFAIDFDESQSIGKRYRRQDEIGTPFCITFDFDSLEDNQVTVRDRDTMEQVRMPISEVK 453

Query: 436 NYASHRFS 443
            +   +  
Sbjct: 454 AFLDEKIK 461


>gi|237785608|ref|YP_002906313.1| histidyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|259511941|sp|C4LIW5|SYH_CORK4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|237758520|gb|ACR17770.1| Histidyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 426

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 129/436 (29%), Gaps = 49/436 (11%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P      + V +         G   + +P  +   L+        D   KE
Sbjct: 12  APKGVPDYVPPNSHEFNAVRSTFHHCATVAGYEPVELPIFEDTSLFARGVGESSDVVTKE 71

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR  ++M   P     +      H      LP         FR E RP+ G  R 
Sbjct: 72  MYTFEDRGGRSMTLRPEGTAGVMRAVIEHGLDRGQLPAKLVYAGPCFRYE-RPQAG--RY 128

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+F      +  +           +     R F  LGL    +   S       P   + 
Sbjct: 129 RQFQQVGVEAIGVDDPALDAE---VIALAYRCFTSLGLMGFRLELTSLGDSTCRPAYREK 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              F+      E     ++      +  +  +  ++ +   ++  + +  A         
Sbjct: 186 LQAFLTSLPLDEETQHRAQINPLRVLDDKRPEVKEMTADAPLMLDYLSDEARAHFETVTG 245

Query: 267 LFD---SLPENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG---ADGKDHYVQ 313
           + D             RG++              G +  +     + G     G      
Sbjct: 246 ILDDLSVPYTINPRMVRGLDYYTKTCFEFVHDDLGAQSGIGGGGRYDGLMAELGGRDLSG 305

Query: 314 MGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +G +G+G  R + A+  E      G           + +  +   ++  R     I   L
Sbjct: 306 VG-FGLGVERALLALETEKKTVTDGSR---------VEVYGVAMGEEAHRRMPV-IINDL 354

Query: 373 SKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            + G            G +        AD  G    +++G   ++ S V++K    G + 
Sbjct: 355 RQSGVRA-----DMSYGHRGLKGSMKAADRAGARFALVIGEDELAKSIVQVKDLHEGEQT 409

Query: 428 DMSLEEVINYASHRFS 443
            + L++V+     R S
Sbjct: 410 AVPLDQVVQEVRGRLS 425


>gi|172041003|ref|YP_001800717.1| glycyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|171852307|emb|CAQ05283.1| glycyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
          Length = 459

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 145/448 (32%), Gaps = 66/448 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +    +W  SG  D +     E L
Sbjct: 32  WDYGPLGVELKENIKRQWWRSMVTSRGDVVGLDSSVILPRRVWEVSGHVDVFTDPLVESL 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R     +     E+        H  +         +     +  E R   G+M++ 
Sbjct: 92  YTHKRYRADHLLEAYEEKH------GHPPANGLADINDPETGQPGKWTEPRAFSGLMKTY 145

Query: 154 EFLMKD-AYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEF 210
              + D      L PE ++  + +          +   G+           IG    +E 
Sbjct: 146 LGPVDDKEGLAYLRPETAQGIFTQFKNVMNSSRQKPPFGIAQ---------IGKSFRNEI 196

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P  + ++ +      +           +    E   D 
Sbjct: 197 TPGNFIFRTREFEQMEMEFFVEPGTDEEWQEYWIEQRLNWYVNLGIDRENLRLREHTEDE 256

Query: 271 LPENKRVSARGIEVGHIFYFG-------------TKYSLPM-------SATFKGADGKDH 310
           L      + R ++V + F+F              T Y L           ++     ++ 
Sbjct: 257 L---SHYAKRTVDVEYAFHFTGSKWGELEGIANRTDYDLKTHSEGSGEDLSYYDQQKEER 313

Query: 311 Y-VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
           +   +     G  R + A +  ++  +              +     ++P K++++ + +
Sbjct: 314 WIPYVIEPAAGLGRSLMAFLVDAYTEEEVPNAKGGTDTRTVLKLDPRLSPVKVAVLPL-S 372

Query: 357 HDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +      EKI  +L  +   D  +D  G  IG ++   D +G P  V V    + D+ 
Sbjct: 373 KKETLTPTAEKIADKLRGLWNID--YDTSGA-IGRRYRRQDEIGTPYCVTVDFDTLEDNA 429

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R T  +E +S++E+  Y + R +
Sbjct: 430 VTVRERDTMEQERVSIDELEGYLAQRLA 457


>gi|319757428|gb|ADV69370.1| histidyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 427

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 139/436 (31%), Gaps = 61/436 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R    +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDLLPQDSAKWQYVENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ ++ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGERHITLRP---EGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F      +      M  +Y   F  LG+K I +   S       
Sbjct: 120 AG--RLRQFHQIGVECFGSNNPATDVETIAM--AYH-FFEELGIKDIRLHLNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKEQLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEEST 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                                          RG++     IF F     G   ++     
Sbjct: 235 AHFEAVKTML-------DSLGIAYVIDTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +GI  P       + +  +    
Sbjct: 288 YDGLVTYFGGPETPAFG-FGMGIERLILVL-----EKQGIDLPLDTQ-LDVYIAVLG--- 337

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q       ++   + K G     D +  ++ +QF  AD+ G    + +G   +   +V +
Sbjct: 338 QEANGGALELVQVIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIESGQVVV 397

Query: 419 KHRLTGIREDMSLEEV 434
           K+  T  + + SLE +
Sbjct: 398 KNNQTRSQVETSLEAL 413


>gi|312870368|ref|ZP_07730493.1| histidine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311094069|gb|EFQ52388.1| histidine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 425

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 141/435 (32%), Gaps = 46/435 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +Q  KG    LP      + V A  RE   + G   +  P  +   ++        D 
Sbjct: 1   MDYQKPKGTADLLPGTTGLWEKVEANAREVFRQFGYRGIRTPMFEDYRVFARNVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +       P     Y +   FR E RP+
Sbjct: 61  VEKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP----------MR 196
            G  R REF      + +            M ++   +F + G+ ++           +R
Sbjct: 120 SG--RQREFHQIGVEALNNESPQIDVEVIAMAMA---LFKKFGVPNVKLVINTLGDKQVR 174

Query: 197 AESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            +     I     H   + AD+ E         +D     +     D  S+   ++  + 
Sbjct: 175 QDYREALINYLKPHYDELSADSQERLYKNPLRVLDSKDEGDQKLVADAPSILDYLDDESQ 234

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYV 312
            Y         K      E      RG++     IF   +  S      +        Y 
Sbjct: 235 SYF-DQVQKLLKELGIDYEIDTNMVRGLDYYNHTIFEIMSD-SPVFGGGYTTVCAGGRYN 292

Query: 313 QMGS-----------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            + S           +G+G  R++  + + + D          AP     + + + D   
Sbjct: 293 GLISQLGGPEEGGIGFGMGVERLMLLLQQENPDF---------APQDQLDLFLASADDQG 343

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++ +++ + G     D  G ++G Q   A         + G + VS+ + ++K+ 
Sbjct: 344 DNLAFEVLSKVRQQGIVADKDYSGVKVGKQIKEAFRRNAKYFAVFGDREVSEGQFQLKNA 403

Query: 422 LTGIREDMSLEEVIN 436
            T    D+ + + + 
Sbjct: 404 ATKDAVDVKVADFVA 418


>gi|307705779|ref|ZP_07642624.1| histidyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307620697|gb|EFN99788.1| histidyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 426

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLVL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LG---EGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLEAISQNFSEIFEK 423


>gi|167045640|gb|ABZ10289.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_APKG10K24]
          Length = 439

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 157/473 (33%), Gaps = 95/473 (20%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNV-NAIIREE-QNRTGAIEMSVPTLQS 76
           L  R G + Q S+   G+   + + PLG +   NV  A  R     R   + +    L  
Sbjct: 7   LSKRRGFVFQSSEIYGGLASTWDYGPLGVELKRNVKEAWWRSVILERDDMVGLDAAILMD 66

Query: 77  ADLWVESGRYDSYGK--------EM-LR-------------------------------- 95
             +WV SG  +++           M  R                                
Sbjct: 67  PKVWVASGHVENFSDPLVQCRSCNMRFRTDDLTSEACPSCGGELADPRQFNLMFKTFMGP 126

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D   +  +   T + +  +       + + LPF   QI   FR+E+ P     R+REF
Sbjct: 127 VEDTASEIWMRPETAQGIFVNFPNVVNSTRKKLPFGIGQIGKAFRNEITPGNFTFRTREF 186

Query: 156 LMKDAYSF---DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
              +   F       E  +    + F  Y+         +  +R E+  +    S+E   
Sbjct: 187 EQMEIEFFVKPGTDEEWLQTWVQERFDWYV---------AHGIRRENLRLRKHESNELAH 237

Query: 213 LA-DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            A D  + +      + +    +  TDFD      +  +  T    +  +  +++    +
Sbjct: 238 YAKDCYDIEYRFPWGWAELEGIASRTDFDLRQHQEASGQDMTYFDDSVEEGQDQRYLPYV 297

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      R +             L         +         S    A+RVV      
Sbjct: 298 IEPSGGVDRAV-------------LAFWLDSYDEE-----PDPASKSSDAVRVV------ 333

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                 +     +AP  ++ + + + ++       ++YA+L K   +  +DD  + IG +
Sbjct: 334 ------LHLHRELAPVTVAALPL-SRNEKLTPTAREVYAKLRKH-FNTQYDD-AQSIGRR 384

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +   D +G P  V +    + D +V I+ R T  +  + + ++++    +  +
Sbjct: 385 YRRQDEIGTPYCVTIDFDTLEDHQVTIRDRDTMSQSRIPITDLVDVLKDKLEH 437


>gi|118444423|ref|YP_877137.1| glycyl-tRNA synthetase [Clostridium novyi NT]
 gi|118134879|gb|ABK61923.1| glycyl-tRNA synthetase [Clostridium novyi NT]
          Length = 463

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 122/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P T + +  +   +   S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDSSAEIYLRPETAQGIFVNFKNAQRSSRKKVPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      ++       +    LG+    +R           
Sbjct: 215 FTFRTREFEQMELE-FFCKPGTDLEWFHYWKNYCWKFLLDLGMTEDNLRFR--------- 264

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D GE ++               + + +  S    +  +            +  
Sbjct: 265 -------DHGEEEL---------------SFYSNATSDIEFLFPFGWGELWGVADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
                E+                          T+      + +   +    +GA RV  
Sbjct: 303 LKKHMEHSGQ---------------------ELTYLDPTTNEKYVPYVIEPSLGADRVAL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        +    +YA+LSK   
Sbjct: 342 AFLVDAYDEEELENGDKRTVLHLHPALAPFKAAILPLSKK---LSEKALDVYAKLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V ++ R    +  +S++E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTVRDRDNMTQIRLSIDELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 LEEKVQ 462


>gi|319651676|ref|ZP_08005803.1| histidyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396743|gb|EFV77454.1| histidyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 424

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 142/450 (31%), Gaps = 68/450 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           +  +G    LP   +    +    RE   +    E+  P  +  +L++ S     D   K
Sbjct: 4   RIPRGTQDILPGEVEKWQLIEEKARELCEKFQYREIRTPIFEHTELFLRSVGDTTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRS--HIKSYRNL--PFTFYQIQLKFRDELRPRF 147
           EM    DR  +++   P   E      RS    K Y +   P   Y +   FR E RP+ 
Sbjct: 64  EMYTFEDRGGRSLTLRP---EGTASAVRSFVEHKMYGDASQPVKLYYMGPMFRYE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F+     +              +    + ++  +GL+ + +   S  +G   S
Sbjct: 120 G--RFRQFVQFGVEAIGSADPAIDAE---VIALAMSLYRSMGLQKLKLIVNS--LGDKES 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-EK 266
                 A                 I     D  + +  N +             + +   
Sbjct: 173 RSAHREALVN---------HFMPRIGEFCQDCQNRLEKNPMRILDCKQDREHELMKSAPS 223

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-GAD---GKDHYVQMGSYGIGAM 322
           + D L ++ +     ++         KY   +   F    +   G D+Y       +   
Sbjct: 224 IIDYLNDDSKTYFEKVQ---------KYLKNLDIDFIVDPNLVRGLDYYNHTAFEIMSDS 274

Query: 323 RVVAAVIESSHDGKGIIWPDSV----AP---FKISL-------------INIKAH----- 357
               A+      G+     + +    AP   F +S+             + +        
Sbjct: 275 EGFGAITTLCGGGRYNGLTEEIGGPEAPGIGFALSVERFIAALEAEKVDLPLNKDIDCYL 334

Query: 358 ---DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +  +D    +  +L   G     D +  +I +QF  AD        ++G   +  +
Sbjct: 335 VSLGEEAKDYTVGLLQKLRMAGYSAERDYLDRKIKAQFKAADRSNAKFVAVLGEDELKAN 394

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           K+ +K   +G + ++ L+  I   +  + +
Sbjct: 395 KINVKSMESGEQTELGLDSFIEKFTELYQS 424


>gi|55980512|ref|YP_143809.1| glycyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|62296700|sp|P56206|SYG_THET8 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|55771925|dbj|BAD70366.1| glycyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 506

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 122/380 (32%), Gaps = 64/380 (16%)

Query: 89  YGKEMLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           Y   M +     + D    A +   T + +  +       + R LPF   QI   FR+E+
Sbjct: 165 YFNMMFKTYVGPVEDEASLAYLRPETAQGIFVNFKNVLDATSRKLPFGIAQIGKAFRNEI 224

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            PR  + R REF   +   F                       R G      R       
Sbjct: 225 TPRNFIFRVREFEQMEIEYFV----------------------RPGEDEYWHRY------ 256

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E +        ++  S++ +               +   I+ ++         + 
Sbjct: 257 --WVEERLKWWQ----EMGLSRENLVPYQQPPEELAHYAKATVDILYRFPHGLEELEGIA 310

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           N   FD     K   A GI          ++S    A      GK     +     G  R
Sbjct: 311 NRTDFDLGSHTKDQEALGI---TARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDR 367

Query: 324 VVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            V A++  +   + +              +AP K+++I +  +     +  +++ ARL  
Sbjct: 368 GVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLA 427

Query: 375 VGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV----------GSKFVSDSKVEIKHRLT 423
           +G   V ++D G  IG  +   D +G P  V V          G+  + D  V ++ R T
Sbjct: 428 LGLGRVLYEDTGN-IGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKD-TVTVRDRDT 485

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  + ++E+  +   R  
Sbjct: 486 MEQIRLHVDELEGFLRERLR 505


>gi|261405428|ref|YP_003241669.1| histidyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261281891|gb|ACX63862.1| histidyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 417

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 124/429 (28%), Gaps = 45/429 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +   G    LP   +    +    R+   R    E+  P  +  +L+        D   
Sbjct: 6   FEKPTGTQDILPGAVEKWQFIEEKARDLCRRYNYREIRTPIFEQTELFERGVGETTDIVE 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM    D+ D++M   P     +   +  +           Y +   FR E RP+ G  
Sbjct: 66  KEMYTFKDKGDRSMTLRPEGTAGVVRAYVQNKLYGEPDVTKLYYLGPMFRYE-RPQAG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----------- 199
           R R+F       F             +       +  LGL  +     S           
Sbjct: 123 RYRQFHQFGVEVFGTADPAIDAE---VIALGYSFYKELGLNGVKAEINSVGTPEVRAAYR 179

Query: 200 -------GPIGGDLSHEFIVLADTGETQVFCSKDFM-----DFPIPSENTDFDDIISLNS 247
                   P+   L  +     +    +V   K           I     +         
Sbjct: 180 SALLAFLEPMKDSLCSDCQSRMERNPLRVLDCKKDQGKFGDAPSILESLDEECSTHFEKV 239

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                        +    +  D    +     +   +G I   G       +       G
Sbjct: 240 QGYLDAMGIEYEINPRLVRGLDYY-THTAFEFKAQGIGAIDTVGG--GGRFNGLVGQIGG 296

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            D        G+     +  ++E  H G  +    +  P  + L+ +    +  R+  + 
Sbjct: 297 PDQPGIGFGIGL---ERIQLILE--HQGVNL---SASKPLDVYLVALGEAAE--RELAKL 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L + G     D +G ++ +Q   AD L      I+G   ++  ++ +K   TG + 
Sbjct: 347 IY-ELRRNGVSAERDYLGRKMKAQMKSADRLQARYTAILGDDELARGEIALKSMETGEQR 405

Query: 428 DMSLEEVIN 436
            + L+ ++ 
Sbjct: 406 TVRLDSLVQ 414


>gi|146317934|ref|YP_001197646.1| histidyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146320120|ref|YP_001199831.1| histidyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253751159|ref|YP_003024300.1| histidyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753060|ref|YP_003026200.1| histidyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|253754883|ref|YP_003028023.1| histidyl-tRNA synthetase [Streptococcus suis BM407]
 gi|166228620|sp|A4VZ92|SYH_STRS2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228622|sp|A4VT07|SYH_STRSY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145688740|gb|ABP89246.1| Histidyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145690926|gb|ABP91431.1| Histidyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251815448|emb|CAZ51026.1| histidyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251817347|emb|CAZ55082.1| histidyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251819305|emb|CAR44645.1| histidyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292557718|gb|ADE30719.1| Histidyl-tRNA synthetase, class IIa [Streptococcus suis GZ1]
          Length = 427

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 139/436 (31%), Gaps = 61/436 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R    +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDLLPQDSAKWQYVENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ ++ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGERHITLRP---EGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F      +      M  +Y   F  LG+K I +   S       
Sbjct: 120 AG--RLRQFHQIGVECFGSNNPATDVETIAM--AYH-FFEELGIKDIRLHLNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKEQLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEEST 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
           V                              RG++     IF F     G   ++     
Sbjct: 235 VHFEAVRSML-------DNLGITYTIDTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +GI  P       + +  +    
Sbjct: 288 YDGLVTYFGGPETPAFG-FGMGIERLILVL-----EKQGIELPLDTQ-LDVYIAVLG--- 337

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q        +   + K G     D +  ++ +QF  AD+ G    + +G   +   +V +
Sbjct: 338 QEANGGALDLVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIESGQVVV 397

Query: 419 KHRLTGIREDMSLEEV 434
           K+  T  + + SLE +
Sbjct: 398 KNNQTRSQVETSLEAL 413


>gi|298253424|ref|ZP_06977216.1| glycyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297532819|gb|EFH71705.1| glycyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 506

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/529 (15%), Positives = 149/529 (28%), Gaps = 149/529 (28%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRY 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRY-------------------------------D 87
              T    + +    +  + +WV SG                                 D
Sbjct: 54  MVTTRGDVVGVDTSVILPSQVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGD 113

Query: 88  SYGKE------------------------MLRLA----DRNDKAMIYGPTHEEVMTDIFR 119
              +                         MLR      +  +      P   + +   F+
Sbjct: 114 KMPENGLKDIACPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVDFK 173

Query: 120 SHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + + S R   PF    I   FR+E+ P   + R+REF   +   F               
Sbjct: 174 NVMTSARQKPPFGIANIGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------ 221

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                                   G D +            Q +       +       +
Sbjct: 222 ------------------------GTDEAW----------HQYWIDTRVRWYVDLGVKPE 247

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              +           +      +           E + ++ R             Y L  
Sbjct: 248 NLRMYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANRT-----------DYDLSA 296

Query: 299 SATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------------- 337
            A   G D        G+ +   +     G  R + A +  ++D                
Sbjct: 297 HAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGVDKRTV 356

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +     +AP K +++ +    ++     + + A L +    + +D+ G  IG ++   D 
Sbjct: 357 LRLDPRLAPVKAAVLPLSKKPELQ-AVAQDLAADLRQHDWVIDYDEAGA-IGRRYRREDE 414

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G PL V V    + D  V I+ R T  +E +SL++V +Y + R +  R
Sbjct: 415 IGTPLCVTVDFDTLEDHAVTIRERDTMQQERVSLDKVADYVASRINEKR 463


>gi|23464742|ref|NP_695345.1| glycyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|59798592|sp|Q8G7W9|SYG_BIFLO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|23325311|gb|AAN23981.1| glycyl-tRNA synthetase [Bifidobacterium longum NCC2705]
          Length = 490

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 166/492 (33%), Gaps = 75/492 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M +SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAQSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +   ++WV SG    +     E L    RN    +     E+   
Sbjct: 54  MVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECLNCHKRNRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSY 174
            +  + +   +++      I+ ++  E R    ++R+    ++D  S   L PE ++  +
Sbjct: 114 KMPENGM---KDIVCPNCGIRGQW-TEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIF 169

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDFM 228
                        +  K++   + S P      +G    +E         T+ F   +  
Sbjct: 170 -------------VDFKNVMTSSRSRPPFGIANMGKSFRNEITPGNFIFRTREFEQMEME 216

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            F  P  + ++                    +  H E   +   +    S R +++ + F
Sbjct: 217 FFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKE---KLSHYSKRTVDIEYKF 273

Query: 289 YFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAA 327
            F              T Y L   +   G D        G+ +   +     G  R +  
Sbjct: 274 GFQGSDWGELEGIANRTDYDLSAHSKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMC 333

Query: 328 VIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  ++D                +     +AP K +++ +    ++     + +   L  
Sbjct: 334 FLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQNLADDLRF 392

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++V
Sbjct: 393 NEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQERVALDKV 451

Query: 435 INYASHRFSNNR 446
            +Y + R    R
Sbjct: 452 ADYVAARIGEKR 463


>gi|325972878|ref|YP_004249942.1| prolyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|323651480|gb|ADX97562.1| prolyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 463

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 5/165 (3%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +++         +S  M   + GA+  +      S G  + R++ A++E   D  G+I P
Sbjct: 213 LQLTTTHDLSNFFSKLMDIKYWGANDIEMTPLQLSAG-SSTRLIGALVEMHKDSVGVILP 271

Query: 342 DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            +++   I+++ +  + D+        I  +L      +  DD     G +    + LG 
Sbjct: 272 WNLSKENIAILLLGENRDEETISYISSIREKLCN--YRLHIDDSYSSFGKKINKVERLGI 329

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P+ +I+G + + + K+ IK RL+  + +  L  + N  S RFS  
Sbjct: 330 PVSLIIGQQEIKNKKITIKSRLSESKYECDLSNLENEIS-RFSKE 373



 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG--KEML 94
            G +   P G    + + + +  E ++ G   +  P L     + E  +       +E++
Sbjct: 23  SGTFFLHPRGCFIWEQIQSFLNAEFSKLGVSNVLFPALLPFQKFQEEQKNSETLNLEEIM 82

Query: 95  RLADRNDKA--MIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMR 151
           RL +   +   +   PT E + +  F+  +K     LPF   Q    +R+E R      R
Sbjct: 83  RLHNSKSEQSVVALRPTSEILFSHYFKERLKERDIKLPFLLNQWSSVYREE-RNTKLFFR 141

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           S+EF  ++ +S     +       K+   Y ++   L
Sbjct: 142 SKEFYWQELHSLHENQKDLDFHLEKIHEIYKKLLREL 178


>gi|300858582|ref|YP_003783565.1| histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686036|gb|ADK28958.1| Histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206294|gb|ADL10636.1| Histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|302330851|gb|ADL21045.1| Histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
 gi|308276536|gb|ADO26435.1| Histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 423

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 139/434 (32%), Gaps = 41/434 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I    KG+  ++P    A   V      + +  G   + +P  +   L+        D  
Sbjct: 8   IISAPKGVPDYIPPVSPAFLGVRDTFAHQAHLAGYEHIELPVFEETTLFARGVGESTDVV 67

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            KEM   ADR ++++   P     +      H      LP         FR E RP+ G 
Sbjct: 68  TKEMYTFADRGERSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLKYYGPFFRYE-RPQAG- 125

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIG 203
            R R+       +  +           +     R    +GL+   +   S       P  
Sbjct: 126 -RYRQLQQVGVEAIGIDDPALDAE---VIALADRSLKAIGLQGYRLELTSLGDGSCRPAY 181

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F+      E     ++      +  +  +  D+ +   ++    +         
Sbjct: 182 RQKLQDFLFSLPLDEETRRRAEINPLRVLDDKRPEVRDMTADAPLMLDNLSSECREHFET 241

Query: 264 NEKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDH 310
              L D L     ++ R             E  H    GT+  +     + G  A     
Sbjct: 242 VTGLLDDLGVAYEINPRMVRGLDYYTKTTFEFVHDG-LGTQSGIGGGGRYDGLMAQLGGQ 300

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +    Y +G  R + A+     + K I     VA F +    +    +  + +   I  
Sbjct: 301 ELSGIGYALGVDRCLLAL---QSEEKTITDGSRVAVFGV---PMG---EQAKRSMVSIVD 351

Query: 371 RLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +L   G   D+ + D G + G+    AD  G    +++G + +    V +K  ++  + D
Sbjct: 352 KLRAQGIPADMSYGDRGLK-GAM-KGADRSGARFTLVLGDRELEHGVVAVKDMVSKEQRD 409

Query: 429 MSLEEVINYASHRF 442
           ++++E++       
Sbjct: 410 IAIDELVVQLKASL 423


>gi|300173446|ref|YP_003772612.1| histidyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887825|emb|CBL91793.1| histidyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 432

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 142/434 (32%), Gaps = 53/434 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG    LP       +V +  R         E+  P  ++ D++  S     D   
Sbjct: 6   FQRPKGTADLLPDNTLQWQHVESTARLLFGDYNFKEIRTPLFENFDVFSRSAGDTSDVVT 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFG 148
           KEM    D+ D+ +   P     +   +  +       + P+  Y +   FR E RP+ G
Sbjct: 66  KEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLFGPEFDKPYKVYYMGPMFRYE-RPQAG 124

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------- 199
             R R+F      +F             M V    +F  LGLK++ +   +         
Sbjct: 125 --RFRQFHQIGVEAFGSKSPALDVEIIAMAV---DLFQTLGLKNLKVAINTLGDKSSRVA 179

Query: 200 ---------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                     P   +LS +     +    +V  SKD  D    ++     D +S  +   
Sbjct: 180 YRQALIDYLKPHFNELSTDSQNRLEQNPLRVLDSKDPRDKIFVADAPSILDYLSEEATKH 239

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFYF---------GTKYSLPMSA 300
                    +   N  +  ++          I E+  I            G +YS  + A
Sbjct: 240 WQQVQTMLRALNINYDIDATMVRGLDYYNDTIFEIMTIDDNLKGAATIAGGGRYS-GLVA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G +          +GIG  R++  +   +      I  D +      ++NI     V
Sbjct: 299 EFGGPE-----TPGVGFGIGMERLIGLL---NAQNSAPIVDDKL---DFYVVNIGDGTDV 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +    +   G     D +G    +QF  AD       V +G + + ++   +K 
Sbjct: 348 V---AMQTVQAIRSFGYVAERDYLGRSAKAQFKSADRNHSKYVVTIGDQELVNNTANVKD 404

Query: 421 RLTGIREDMSLEEV 434
             TG ++ + L ++
Sbjct: 405 MATGYQQTVKLADL 418


>gi|154484526|ref|ZP_02026974.1| hypothetical protein EUBVEN_02240 [Eubacterium ventriosum ATCC
           27560]
 gi|149734374|gb|EDM50291.1| hypothetical protein EUBVEN_02240 [Eubacterium ventriosum ATCC
           27560]
          Length = 465

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 120/362 (33%), Gaps = 62/362 (17%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F       +      +  Y R F R     LG+K   MR      
Sbjct: 214 FTFRTREFEQMELEFFCEPGTDLE------WFQYWRAFCRDWLLSLGIKEDEMRL----- 262

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             D S E +     G T +                 F                       
Sbjct: 263 -RDHSPEELCFYSKGTTDI------------EFLFPFGWGELWGIADRTDYDLTQHQELS 309

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +  +    +++R     IE       G  + +L         +       +G+     
Sbjct: 310 KQDLTYFDDDKHERYVPYVIE----PSLGADRVTLAFLCAAYDEEN------IGTEEKPD 359

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           MR V            + +  ++AP KI ++ +        +  EK++A LSK   +  +
Sbjct: 360 MRTV------------LHFHPALAPVKIGVLPLSKK---LNEGAEKVFAELSKY-YNCEF 403

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++   D +G P  V        D  V ++ R T  +E + +E++  Y   +
Sbjct: 404 DDRGA-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERIKIEDLKEYFEQK 462

Query: 442 FS 443
           F 
Sbjct: 463 FE 464


>gi|85712736|ref|ZP_01043781.1| Histidyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85693468|gb|EAQ31421.1| Histidyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 415

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 144/429 (33%), Gaps = 63/429 (14%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP    A   V AIIR+     G  E+ +P L+S  L+  S G   D   KEM    DRN
Sbjct: 5   LPEQTAAWQQVEAIIRQVAASYGYQEIRMPVLESTALFKRSIGEVTDIVEKEMYTFDDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P            H   Y  +    + +   FR E RP+ G  R R+F     
Sbjct: 65  GESVTLRPEGTASCVRAGNQHGLLYNQI-QRLWYMGPMFRYE-RPQKG--RYRQFHQFGI 120

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLG-----------LKSIPMRAESGPIGGDLSHE 209
            +F L    +      + +   R++  LG           L S   RA       D   +
Sbjct: 121 ETFGLEGADADAE---VILLSARLWKALGMADQVELQLNSLGSNEARARYRDALRDYLEQ 177

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           +    D  E             + S++ +   ++     +  +    +       +   D
Sbjct: 178 YKSELD--EDSQRRLDTNPLRILDSKDGNTQQLLEQAPKLSDYWDEESKQHFDELKARLD 235

Query: 270 SLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKDHYVQMG 315
           +            RG++     +F       G + ++     + G      GK       
Sbjct: 236 AAGIPYVFNERLVRGLDYYNRTVFEWVTTALGAQGTVCAGGRYDGLVEQLGGKATPAV-- 293

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAP---FKISLINIKAHDQV-CRDACEKIYAR 371
            + +G  R+V  + E           + +AP       L+ +    ++  +   EK+   
Sbjct: 294 GFAMGMERLVLLLQEQ----------EKLAPRRAVDAYLMPLGEAAELNAQAVAEKLRNE 343

Query: 372 LSKVGCDVFWDDMGEQIG----SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIR 426
           L  +   V         G     Q   AD  G  + +I+G   + ++++ +K  R T  +
Sbjct: 344 LPDLRIVV------HSGGGAMKKQIKKADKSGAEVALILGENELENNQLTVKPLRTTDDQ 397

Query: 427 EDMSLEEVI 435
           + +   E++
Sbjct: 398 QTLGWGELV 406


>gi|302348333|ref|YP_003815971.1| Threonyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328745|gb|ADL18940.1| Threonyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 468

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 31/185 (16%)

Query: 282 IEVGHIFYFGTKYSLPMSATF----------------KGADGKDHYVQMGSYGIGAMRVV 325
           I+VG        +S+P    +                 G  G     Q+  +G   +R++
Sbjct: 283 IDVGTS----KGFSIPYDIQYSLRLLAYRTRGGGLAALGLHGAVRDRQVTCFG--PLRLI 336

Query: 326 AAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            + +          GK    P  ++P ++++I +K       +   ++   L  VG   +
Sbjct: 337 MSSLIDFGLKLADSGKTPYLPFWLSPLQVAVIPVKDQ---HVEYARRLLQDLIDVGARAY 393

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYAS 439
            D   + +G++   A     P+  +VG K V  + V I+ R L G +E +  E ++   S
Sbjct: 394 LDPPTKGLGARVRAAGKAWVPIIAVVGDKEVESNTVNIRRRWLQGQQEVVQAEALVEEVS 453

Query: 440 HRFSN 444
              ++
Sbjct: 454 QLLAS 458


>gi|166077806|gb|ABY80997.1| glutamyl-prolyl tRNA synthetase [Katamysis warpachowskyi]
 gi|166077808|gb|ABY80998.1| glutamyl-prolyl tRNA synthetase [Katamysis warpachowskyi]
          Length = 145

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S RGI+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRGIQGATSHHLGQNFSKMFDIVFEDPTAPDKKQYVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA  +  ++ +    +   D       A E++   L +    V  D      
Sbjct: 81  KGLVLPPRVAAIQCIIMPVGITAKTTDDERSALITAAEQLKKELEEGDVRVECDFRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|172058096|ref|YP_001814556.1| histidyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|171990617|gb|ACB61539.1| histidyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 426

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 131/452 (28%), Gaps = 69/452 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           +  +G +  LP   +    +   +RE   R    E+  P  +  +L+        D   K
Sbjct: 2   KLPRGTFDVLPGTVERWQYIENQLREISKRYNYKEIRTPIFEETELFKRGVGETTDIVQK 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----PFTFYQIQLKFRDELRPRF 147
           EM  L  R  +     P   E    + RS + +        P   + I   FR E RP+ 
Sbjct: 62  EMFMLEKRGKEQFTLRP---EGTAAVVRSFVTNKLYGAANQPVKLFYIGPMFRYE-RPQA 117

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+       +              +    + I+   GLK + +   S  +G   S
Sbjct: 118 G--RFRQLHQYGVEALGSEEPAIDAE---VISLAMSIYRSFGLKKLKLVINS--LGDSES 170

Query: 208 ----------------HEFIVLA----DTGETQVFCSKDFMDFPIPSENTDFDDI----- 242
                           HE         +    +V   K   + P  +      D      
Sbjct: 171 RAAHREALVNHFKPVAHELCQDCQNRLEVNPLRVLDCKVDRNHPSMATAPSILDFLNPAS 230

Query: 243 --ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYF--GTKYSLP 297
                  ++           D    +  D             E  G I     G +Y+  
Sbjct: 231 KEYFDQVLLHLDALGIEYVIDPTLVRGLDYYNHTSFEIMSEAEGFGAITTLCGGGRYN-- 288

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    G      +G +GIG  R++ A+          + P+      + ++     
Sbjct: 289 ---GLVEQIGGPATPGIG-FGIGIERLLMAL------ENEGVLPEIDDAIDVFIV--AQG 336

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ----FAVADLLGFPLQVIVGSKFVSD 413
           +        ++   L  +  +    D    +G +    F  AD L     VI+G + V  
Sbjct: 337 NDEVEKTATRL---LQLMRLEGLAADRDY-LGRKFKGQFKAADRLKARFTVILGDEEVER 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               +K   TG + D+ L  V +    +    
Sbjct: 393 GAAALKDMSTGEQIDVPLSAVADTIVAKLKEE 424


>gi|256825028|ref|YP_003148988.1| glycyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688421|gb|ACV06223.1| glycyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
          Length = 468

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 145/449 (32%), Gaps = 64/449 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    +N+           R   + +    +    +W  SG   ++      L 
Sbjct: 35  WDYGPLGVALKENIKRQWWRTMVQMRDDVVGLDSAVILPTAVWEASGHVATFTD---PLT 91

Query: 98  DRNDKAMIYGPTH-EEVMTD--IFRSHIKSYRNLPFT---FYQIQLKFRD-ELRPRFGVM 150
           +       +   H +E + +    +       ++ F          K    E +   G++
Sbjct: 92  ECQSCHKRFRADHLQEAVAEKKAAKGQEVDPDDVSFEDIACANCGTKGAWTEPKQFSGLL 151

Query: 151 RSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLS 207
           ++       ++    L PE ++  + +          +   G+  +         G    
Sbjct: 152 KTYLGVTEDESGKHYLRPETAQGIFTQFANVMTTSRKKPPFGIAQV---------GKSFR 202

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E         T+ F   +   F  P+E   + D                  +    E  
Sbjct: 203 NEITPGNFIFRTREFEQMELEYFVAPAEAPKYFDEWLEVCEKWFLDLGITPENIRRYEHP 262

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD-------- 306
            D   +    S R I++ + F F              T + L + A   G D        
Sbjct: 263 ED---KLSHYSDRTIDLEYRFGFSGSEFGELMGVANRTDFDLSVHAEASGQDLSYFNQAT 319

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLIN 353
           G+ +   +     G  R + A +  ++                 +     +AP K++++ 
Sbjct: 320 GERYVPYVIEPAFGLTRALMAFLIDAYTEDEAPNAKGGMDKRVVLKLDPRLAPVKVAVLP 379

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  +++       ++ A+L +   DV +DD    IG ++   D +G P  + V    + D
Sbjct: 380 LSRNEE-LSPKARELAAQLRQYW-DVDFDDSQA-IGKRYRRQDEIGTPFCITVDFDTLED 436

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
             V I+ R T  +E + L++V  Y + R 
Sbjct: 437 DAVTIRERDTMSQERVPLDQVQGYLAQRL 465


>gi|217964333|ref|YP_002350011.1| histidyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|217333603|gb|ACK39397.1| histidyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|307571101|emb|CAR84280.1| hisS [Listeria monocytogenes L99]
          Length = 425

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    +         E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKNVCENFQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMTFFKKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLAL-----EKADIEIPAK-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++   ++
Sbjct: 405 EQEAVSETTILEKLTN 420


>gi|71894465|ref|YP_278573.1| glycyl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|123747937|sp|Q4A5V9|SYG_MYCS5 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|71851253|gb|AAZ43862.1| glycyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 451

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/505 (13%), Positives = 151/505 (29%), Gaps = 146/505 (28%)

Query: 19  EIASHKLMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMS 70
           E+ +H  +   G + Q S+   G+   + + PLG    DN+    ++    ++     + 
Sbjct: 8   ELINH--LKNAGFVFQGSEIYGGVANTWDYGPLGVLLKDNILNYWKKFFVFSQNNIYMLD 65

Query: 71  VPTLQSADLWVESGRY-------------------DSYGKEMLR---------------- 95
              L ++ +W  SG                     D   +E+                  
Sbjct: 66  SKILLNSKVWEASGHVGNFNDPLIENKINNKRYRADKVIEELFPNENVAKMTHEQMQEFL 125

Query: 96  -----------------------------LADRNDKAMIYGPTHEEVMTDIFRS-HIKSY 125
                                        + D   KA+   P   + +   F++      
Sbjct: 126 QKNVTSYDNSKCAWSEIKKFNLMFETFQGVVDDKKKAIYLRPETAQGIFINFKNIQRAMR 185

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             LPF   Q+   FR+E+ P   + R+REF   +   F    E + +SY          F
Sbjct: 186 AKLPFGVAQVGKSFRNEVTPGNFIFRTREFEQMELEFFF--DEETPNSY----------F 233

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             L                                             S +      +S 
Sbjct: 234 DEL------------------------------------------VNKSYDFMLKLGLSK 251

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFK 303
           N++  +                 +           GI     F   T  K+S      + 
Sbjct: 252 NNLKVRKHDQEELAHYSKATVDLEYNFPFGWGELMGIAHRGNFDLSTHSKFSNE-KLEYL 310

Query: 304 GAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLIN 353
             +  K     +    +G  R++ A++  ++  +          +     ++P+K++++ 
Sbjct: 311 DPNTNKKLIPSVIEPSVGLDRLMLAILCEAYSEEKVSESDTRLVLKLDKKLSPYKVAILP 370

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +            +IY+ L      V +D+    IG ++   D +G    + V  + + D
Sbjct: 371 LIKK---FNPKANEIYSYLIDKNISVTFDES-ASIGKRYRRQDAIGTYYCLTVDEQSLED 426

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
           + V ++ R +  +E ++ ++++ + 
Sbjct: 427 NTVTLRDRDSMQQERINFKDILKFL 451


>gi|289423161|ref|ZP_06424976.1| histidine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156492|gb|EFD05142.1| histidine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 420

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/422 (14%), Positives = 132/422 (31%), Gaps = 50/422 (11%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + +    R+  +  G  E+  P  ++ +L+        D   KEM    DR D+ +   
Sbjct: 20  WNYLETKFRQICSMYGYEEIRTPIFENTELFQRGVGDTTDIVQKEMYSFKDRGDRDLTLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +       P   + I   FR E RP+ G  R R+F      +     
Sbjct: 80  PEGTAGVIRAFIENKMFADAQPTKLFYITPCFRYE-RPQSG--RQRQFHQFGVEAVGSDT 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEF-----IVLADT 216
                         ++    LGLK + +   S            L  E+      VL D 
Sbjct: 137 PSLDAE---AISLAMQFLGELGLKDLSVSINSVGCPVCRESYNKLLKEYLEKKSDVLCDL 193

Query: 217 -GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             E +       +D  + +   +  DI  + + + E     +       +E       + 
Sbjct: 194 CNERREKNPMRVIDCKVQTCQDNIKDIPLMADHLCEDCQDHFEKLKSYLDEMNIKYHVDK 253

Query: 275 KRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRV 324
           K    RG++      F       G + ++     + G     G         +G+G  R+
Sbjct: 254 K--IVRGLDYYKRTAFEIISNDLGAQSTVCGGGRYDGLVEQIGGPEGYSGVGFGMGVERL 311

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-- 382
           +  +  ++ + +            I ++ +    ++ +     I   L         D  
Sbjct: 312 LLTLEANNIEIENPN------KTDIYIVTLG---EMAKLKSFGILKNLRDNHISADKDHL 362

Query: 383 DMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D   +   +++            +++G + +   +  +K+  TG ++ + +  ++     
Sbjct: 363 DRSFKAQFKYSN----KINAKYTIVIGDEELEKDEATLKNMETGEQKSVKISNLVEEFKG 418

Query: 441 RF 442
             
Sbjct: 419 LL 420


>gi|187729858|ref|YP_001789032.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|170676050|dbj|BAG14320.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
          Length = 428

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 138/429 (32%), Gaps = 46/429 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEML 94
           KG    LP   +    V  I R+  N+ G   +  P  ++ +++        D   K+M 
Sbjct: 10  KGTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVEKQMY 69

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFGVMRS 152
              DR  + +   P         +  +       P     Y +   FR E RP+ G  R 
Sbjct: 70  DFDDRGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYE-RPQSG--RQ 126

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F      + +            +    L+ F +LG+  + +   +  +G   + +   
Sbjct: 127 RQFTQIGCEALNSESPQIDVE---VISEALQFFKQLGINDLKLTVNT--LGDKETRDAYH 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHNEKLFD 269
            A     + +  +   D            + S +   ++  A   +  D    ++ K F+
Sbjct: 182 KALIDYLKPYYDQLSDDSKERMYKNPLRVLDSKDETDQKIVANAPSILDSLSDYSAKYFE 241

Query: 270 SLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQMGS-- 316
            + +         E+      G  Y           S      +    G   Y  + S  
Sbjct: 242 EVKKLLDKLNIKYEIDSDMVRGLDYYTQTIFEIMSNSDVFGGGYVTVCGGGRYNGLISQL 301

Query: 317 ---------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    YGIG  R++  V + + D      PD         +   + D    +   +
Sbjct: 302 GGPDEGGIGYGIGVERLLLLVQKENPDFTPKYGPD---------VFFASADDEGDELAFE 352

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  ++ K G     +    ++GSQ   A         ++G K V + K E+    +   +
Sbjct: 353 VLDKIRKNGVSADKNYQDVKVGSQIKEAIRSKPRYYAVIGKKEVEEGKFELSKVDSDQTQ 412

Query: 428 DMSLEEVIN 436
            +S++E  +
Sbjct: 413 TVSVKEFED 421


>gi|45359177|ref|NP_988734.1| histidyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|46396586|sp|P60921|SYH_METMP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|45048052|emb|CAF31170.1| histidyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 416

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 135/425 (31%), Gaps = 30/425 (7%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           + Q  KG   +LP   K    +   +R+  +     E++ PT +S +L   ++G  D   
Sbjct: 1   MFQKPKGTRDFLPEEMKKRKTIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG--DEIR 58

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            ++    D  D+ M   P     +   + +  K+    P   Y     FR E  P+ G  
Sbjct: 59  TQLFVFRDHGDREMGLRPELTSSVARFYINEFKNT-PKPVKLYYFTNCFRYE-NPQAG-- 114

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKM-FVSYLRIFHRLGLK-----SIPMRAESGPIGG 204
           R REF    +         +      M       I     +       +    E   +  
Sbjct: 115 RYREFWQMGSELIGSKKPIADAEVVNMAIEGLKEINMDFEIHIGHLGVLKGVFEKYNLSD 174

Query: 205 DLSHEFIVLADTGETQVFCS-----KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           D  +E   L D  +     S     +   +  I  +  +  D+     ++       A  
Sbjct: 175 DEGNEIRRLIDKEDMDGLKSVLSRLESEKNIEISKKVFEVLDLKGGKEVIPILKEKLADF 234

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYG 318
                                 I  G     G  Y   M     G  +G       G Y 
Sbjct: 235 ESSVAALENLDSILEFVPHDYVINFGIAR--GLDYYTGMVFEVYGKKEGAKQVCGGGRYD 292

Query: 319 IGAMRVVAA----VIESSHDGKGIIWP---DSVAPFKISLINIKAHDQVCRDACEKIYAR 371
              + +        +  ++    I+       V    I ++ +K+  ++    C KI   
Sbjct: 293 -NLIELFEGEPSPAVGFAYGFDRIMLNIDDFEVENESIFVVPVKS-SEMLLKECLKIAKT 350

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D MG ++      A+       +IVG   + D KV +K+  TG +  + L
Sbjct: 351 LRDSGKSVEVDLMGRKLNKALNYANTKNIKKVLIVGENDIRDGKVSLKNMETGEQSLIEL 410

Query: 432 EEVIN 436
           ++++N
Sbjct: 411 KDILN 415


>gi|223044387|ref|ZP_03614421.1| glycyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442256|gb|EEE48367.1| glycyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 463

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 124/368 (33%), Gaps = 76/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E                                       
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEI------------------------------------- 236

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E+     T     F S+   D  I  EN    D  +                D+  +  
Sbjct: 237 -EWQNFWKT-----FASQWLKDLNINEENMRLRDHDADELSHYSNATT-----DIEYKFP 285

Query: 268 FDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVV 325
           F         S    ++  H  + G  +       +   +  + +        +GA RV 
Sbjct: 286 FGWGELWGIASRTDFDLQKHSEHSGEDF------KYHDPETNEKYVPYCIEPSLGADRVT 339

Query: 326 AAVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            A +  +++ +G          + +  ++AP+K +++ +            KI+ +LS+ 
Sbjct: 340 LAFLCDAYEEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSSEAIKIFEQLSQS 396

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+ 
Sbjct: 397 -FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELE 454

Query: 436 NYASHRFS 443
            + + +  
Sbjct: 455 TFLAEKVK 462


>gi|168334788|ref|ZP_02692914.1| histidyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 416

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 125/422 (29%), Gaps = 48/422 (11%)

Query: 45  LGQKALD--NVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY--DSYGKEMLRLADRN 100
            G +  +   V +IIRE     G  E+  P  +   L+        D   KEM    D+ 
Sbjct: 13  FGTEIRNLQKVESIIREVCENFGIGEIRTPIFELTHLFQRGVGTATDIVQKEMYSFVDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D  +   P     +   +          P   Y I   FR E RP  G  R R+F     
Sbjct: 73  DNNITLKPESTAAVVRAYLERNLGENAQPTKLYYISPTFRYE-RPEAG--RLRQFHQFGV 129

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GP----------IGGDLSH 208
             F  +   +      +  + L+   RL + ++ +   S  GP               + 
Sbjct: 130 EVFGSSAAIADAEVIAVANTLLK---RLNIANVKLYINSLGGPKCREKYNQQLKNFLETK 186

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +  + +   E ++      +D         F D  +               +        
Sbjct: 187 KDNLCSLCNERRIKNPLRVLDCKNEDCQKLFADAPTT-LDALDPECREHFDTLTTLLTKM 245

Query: 269 DSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA----------DGKDHYVQMGS 316
           +          RG++     +F F    S   S T  G            GK        
Sbjct: 246 NIPFIVNPRIVRGLDYYTKTVFEFILD-SEAYSGTICGGGRYDKLVEEIGGKAVPAV--G 302

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +G G  R++ A +  + +         +A      I I        +    +   L    
Sbjct: 303 FGTGIERLLIAYLAENPNQN-------IATRD---IFIGYRGDAAMEKAMILVNDLRSQH 352

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +   D     + +Q   A+ +G     I+G   +  + + +K+  T     +  E+++ 
Sbjct: 353 XNADTDLXNRSVKAQMKYANKIGAKYATIIGETELETATLLVKNMKTYQEHQIKFEDLLK 412

Query: 437 YA 438
           + 
Sbjct: 413 FL 414


>gi|283852907|ref|ZP_06370168.1| histidyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283571736|gb|EFC19735.1| histidyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 421

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 143/437 (32%), Gaps = 52/437 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG     P        +    R+  +R G  E+ VP L+  +L+  S     D   KEM 
Sbjct: 8   KGFADLFPPDSTVFAFIEQTARDVFSRYGYRELRVPVLERTELFSRSIGEETDVVQKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR  +++   P     +        ++   L   F+     FR E RP+ G  R R+
Sbjct: 68  TFPDRKGRSLTLRPEATAGVMRALIEDKRAGEGL-AKFFAYGPMFRYE-RPQKG--RMRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F   D  +              M   YLR    LGL  + +   S       P+  D+  
Sbjct: 124 FHQIDVEAVGSPEPLLDAEVLLMLDQYLR---ALGLSELTVELNSLGCRECRPVFLDVLR 180

Query: 209 EF-------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATS 260
           EF        +  D    ++      +D  +P       D   + + +       +AA  
Sbjct: 181 EFLKGMHKEKLCDDCMRRKLTNPLRVLDCKVPQCKEFTADAPRITDHLCPDCAEHFAAVR 240

Query: 261 DVHNEKLFDSLPENKRVSARGIE--VGHIF-----YFGTKYSLPMSATFKG----ADGKD 309
            + +    D     +    RG++  V   F       G++ S+     + G      G D
Sbjct: 241 RILDAAGLDYTLNPRL--VRGLDYYVRTTFEIVSGNIGSQSSVAGGGRYDGLVASLGGAD 298

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                 + G   M  +A +I               AP  + ++     D    D    + 
Sbjct: 299 VPGVGFACG---MERLALLIGGV---------TEAAPDFVLVVL----DPAGLDRGLLLA 342

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G         + + SQ   AD  G    +++G+  ++   V +K+   G +E +
Sbjct: 343 QDLRRAGFAGEAPFAAKSVKSQMRAADKSGASFCLVLGADELAQGTVVVKNMRAGGQETV 402

Query: 430 SLEEVINYASHRFSNNR 446
             + +  +   R    +
Sbjct: 403 GQDLLPAFLRARLEEAQ 419


>gi|323483766|ref|ZP_08089146.1| hypothetical protein HMPREF9474_00895 [Clostridium symbiosum
           WAL-14163]
 gi|323402957|gb|EGA95275.1| hypothetical protein HMPREF9474_00895 [Clostridium symbiosum
           WAL-14163]
          Length = 462

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 122/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       +  +Y K +   +     LG+K + MRA         
Sbjct: 214 FTFRTREFEQMELEFFCEPDTDLEWFAYWKEYC--INWLKALGIKEVEMRARD------- 264

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            HE        E   F SK   D                  I   +   +     + +  
Sbjct: 265 -HEQ-------EELSFYSKATTD------------------IEFLFPFGWGELWGIADRT 298

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
            +D                     G          F       +   +    +GA RV  
Sbjct: 299 DYDLTQHQNTS-------------GQD-----MTYFDDEKKIKYIPYVIEPSLGADRVTL 340

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A + +++D + I          +  ++AP KI ++ +        +  EK+Y  L K   
Sbjct: 341 AFLCAAYDEEEIGEGDVRTVLHFHPAIAPVKIGVLPLSKK---LNEGAEKVYNELCKY-Y 396

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +DD G  IG ++   D +G P  +       +D  V ++ R T  +  + + E+  Y
Sbjct: 397 NCEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSETDGAVTVRDRDTMEQVRVPITELKAY 455

Query: 438 ASHRFS 443
              +F 
Sbjct: 456 FEDKFR 461


>gi|281204606|gb|EFA78801.1| histidine-tRNA ligase [Polysphondylium pallidum PN500]
          Length = 440

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 132/439 (30%), Gaps = 49/439 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEML 94
           KG     P  ++    V  + R      G  EMS P ++  +L+  S   DS    KEM 
Sbjct: 6   KGTIDIFPKEKRLYQFVGNVGRRVAAIYGFKEMSTPIIEHTELFQRSVGDDSDIVSKEMY 65

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D         P +   +     +  +S  ++P  ++     FR E RP+ G  R R+
Sbjct: 66  SFKDLGGSMTCLRPENTAGVVRAVVNE-QSAAHMPQRYFYSGPMFRYE-RPQRG--RQRQ 121

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG---------- 204
           F      SF  +   S          +L        K        G +            
Sbjct: 122 FEQLGIESFGESDPSSDVEVIDCANMFLNQLSITNDKYTLKINSLGDLESRSKYLNQLEL 181

Query: 205 -------DLSHEFIVLADTG-ETQVFCSKDFMDFPIPSENTDFDDI------ISLNSIVE 250
                   LS +     D G   ++  SKD  D  I  +     D          N ++ 
Sbjct: 182 YYKDRRESLSKDSQDRLDRGSILRILDSKDVKDKAISKDAPKLFDYLNSESLDRFNKVLN 241

Query: 251 QWTAPYAATSDVHN-EKLFDSLPENKRVSARGIEVGHI------FYFGTKYSLPMSATFK 303
                       HN  +  D           G E             G +Y   ++  F 
Sbjct: 242 GLDKFELKYQLDHNLVRGLDYYNHTIFEMVVGDETTTSSAPPLAILGGGRY-DGLANKFG 300

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   +    +  G  R++  + +        +      P    ++     ++    
Sbjct: 301 YKSQKSAALPSIGWACGVERILMFMDQQ-------LLKPETKPI---VVCTFESNESIVQ 350

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP-LQVIVGSKFVSDSKVEIKHRL 422
               I   L   G  V   D+      Q   A+    P + ++VG +    + V+IKH  
Sbjct: 351 LARDIARTLRHQGYAVIVSDLNLSTSKQIRNANQRYEPEVVIVVGGEEALTNSVQIKHMA 410

Query: 423 TGIREDMSLEEVINYASHR 441
           T  +  + +E++ ++ +  
Sbjct: 411 TESKHTVRIEKITDHLTQL 429


>gi|159027764|emb|CAO89634.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 427

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 76/212 (35%), Gaps = 12/212 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + + LG      +   + +     G  E+  P L ++D    +G+   + +E  +   
Sbjct: 168 FVNLIALGAALERALINFMLDRHIVAGYTEVLPPILINSDSLRGTGQLPKFAEESFKC-- 225

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             D  +   PT E  +T+++R  I S   LP         FR E     +   G++R  +
Sbjct: 226 -RDDELWLAPTAEVPVTNLYRDEILSSEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQ 284

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +     + P+ S   +  +  +   I   L L    +   +G +G   +     E 
Sbjct: 285 FNKVEMVKI-VHPDASAQEHESLVANAEAILQALQLPYRVIELCTGDLGFSAAKCYDLEV 343

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            + +     ++    +F DF     N  F + 
Sbjct: 344 WLPSANTYREISSCSNFRDFQARRANIRFKEK 375


>gi|325989371|ref|YP_004249070.1| prolyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323574456|emb|CBZ40106.1| Prolyl-tRNA synthetase [Mycoplasma suis]
          Length = 463

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 5/165 (3%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +++         +S  M   + GA+  +      S G  + R++ A++E   D  G+I P
Sbjct: 213 LQLTTTHDLSNFFSKLMDIKYWGANDIEMTPLQLSAG-SSTRLIGALVEMHKDSVGVILP 271

Query: 342 DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            +++   I+++ +  + D+        I  +L      +  DD     G +    + LG 
Sbjct: 272 WNLSKENIAILLLGENRDEETISYISSIREKLCN--YRLHIDDSYSSFGKKINKVERLGI 329

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           P+ +I+G + + + K+ IK RL+  + +  L  + N  S RFS  
Sbjct: 330 PVSLIIGQQEIKNKKITIKSRLSESKYECDLSNLENEIS-RFSKE 373



 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG--KEML 94
            G +   P G    + + + +  E ++ G   +  P L     + E  +       +E++
Sbjct: 23  SGTFFLHPRGCFIWEQIQSFLNAEFSKLGVSNVLFPALLPFQKFQEEQKNSETLNLEEIM 82

Query: 95  RLADRNDKA--MIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMR 151
           RL +   +   +   PT E + +  FR  +K     LPF   Q    +R+E R      R
Sbjct: 83  RLHNSKSEQSVVALRPTSEILFSHYFRERLKERDIKLPFLLNQWSSVYREE-RNTKLFFR 141

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           S+EF  ++ +S     +       K+   Y ++   L
Sbjct: 142 SKEFYWQELHSLHENQKDLDFHLEKIHEIYKKLLREL 178


>gi|254518565|ref|ZP_05130621.1| histidyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226912314|gb|EEH97515.1| histidyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 415

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 140/428 (32%), Gaps = 41/428 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  ++R+     G  E+  P  +  +L++       D   K
Sbjct: 4   QAPKGTKDMLPQDAYKWHYVEGVLRDVSKSYGVREIRTPMFEHTELFLRGVGETTDIVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+ D+++   P         F  +       P   Y I   FR E        R
Sbjct: 64  EMYTFNDKGDRSITLKPEGTAPTVRAFIENRLFNEAQPTKLYYIIPCFRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+F       F             +    +    +LGLKS+ +   +       P    
Sbjct: 121 LRQFHQYGVEVFGSKEASIDAE---VISLAMESLKKLGLKSLSLNINNLGCPKCRP---K 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-----FDDIISLNSIVEQWTAPYAATS 260
            +       +     +           P    D      ++I     I+  +      + 
Sbjct: 175 YNEALKKYLEENYDNLCGICKTRFEKNPMRILDCKEKSCNEITKHAPIILDYICEECDSH 234

Query: 261 DVHNEKLFDSLPENKRV---SARGIEVG--HIFY-FGTKYSLPMSATFKG---ADGKDHY 311
               +   D+L    +V     RG++     IF      +++     +       G    
Sbjct: 235 FTEVKNYLDALKIQYKVDPGIVRGLDYYTKTIFEILNDDFTVCGGGRYDKLIEEIGGPEM 294

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +G +G+G  R++  +     + +GI  P+      +  + I A  +  + +   +  +
Sbjct: 295 PAVG-FGLGLERLIMTL-----EKEGIEIPNE----GVVDLYIGARGEAAKTSAFVLANK 344

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L  +G     + MG  I ++   A+ +G     I+G   + +  +++K    G + ++SL
Sbjct: 345 LRAIGIKTEINHMGRSIKAEMKYANKIGSAFTTILGDDELQNKTLKLKRMSDGEQFEVSL 404

Query: 432 EEVINYAS 439
           + +   A 
Sbjct: 405 DNIEEIAK 412


>gi|46907748|ref|YP_014137.1| histidyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094550|ref|ZP_00232211.1| histidyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|254852144|ref|ZP_05241492.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|254931455|ref|ZP_05264814.1| histidyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|300764813|ref|ZP_07074803.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|67461798|sp|Q71ZF0|SYH_LISMF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46881017|gb|AAT04314.1| histidyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017076|gb|EAL07948.1| histidyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|258605447|gb|EEW18055.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|293583007|gb|EFF95039.1| histidyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|300514489|gb|EFK41546.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
          Length = 425

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 143/436 (32%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    ++        E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL  I ++     +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMEFFRKIGL--INIKLVINSLGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLAL-----EKADIKIPAK-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++    +
Sbjct: 405 EQEAVSETTILEKLIN 420


>gi|295109870|emb|CBL23823.1| glycyl-tRNA synthetase, dimeric type [Ruminococcus obeum A2-162]
          Length = 464

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 118/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y +              +     G   
Sbjct: 214 FTFRTREFEQMELEFFCEPDTDLE------WFAYWK----------KFCLDWLSSLGLKE 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D        +F        +           +   N   
Sbjct: 258 DEVRYRDHDKEELSFYSKATTD-------VEFLFPFGWGELWGIADRTDYDLTQHQNVSG 310

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D                                F     + +   +    +GA R+V A
Sbjct: 311 QDL-----------------------------TYFDDEKKQKYIPYVIEPSLGADRMVLA 341

Query: 328 VIESSHDGKGI-----------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            + S++D + +            +   +AP KI ++ +        +  EKIY +LSK  
Sbjct: 342 FLCSAYDEEVLDAEKNDVRTVLHFHPVLAPVKIGVLPLSKK---LNEGAEKIYQQLSKK- 397

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  +DD G  IG ++   D +G P  +    +  +D  V ++ R T  +  + ++E+  
Sbjct: 398 YNCEYDDRGN-IGKRYRRQDEIGTPFCITYDFESENDGAVTVRDRDTMEQVRIKIDELDA 456

Query: 437 YASHRF 442
           Y + +F
Sbjct: 457 YFADKF 462


>gi|148377533|ref|YP_001256409.1| glycyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291579|emb|CAL58965.1| Glycyl tRNA synthetase (Glycine tRNA ligase) [Mycoplasma agalactiae
           PG2]
          Length = 458

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/463 (15%), Positives = 156/463 (33%), Gaps = 50/463 (10%)

Query: 18  AEIASHKLMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A I +H  +  TG + Q S+   G+   + + PLG    +N+  + ++E   +      +
Sbjct: 9   ASIINH--LKATGFVFQGSEIYGGLSNTWDYGPLGSLLKENIKDLWKKEFIYSEHNNFLI 66

Query: 72  --PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR----SHIKSY 125
               L +  +WV SG   ++   ++       +        E V + I        +  Y
Sbjct: 67  DSKILMNPKVWVTSGHVSNFNDPLIENKVNGKRYRADKIIQEIVPSLIPEAMTFKQMHEY 126

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
                T Y        E+R    +  +++  +  +     L PE ++     +FV++  +
Sbjct: 127 LVKNVTEYDNSKCNWSEIRKFNLMFETKQGIIEGEKSLIYLRPETAQ----GIFVNFKNV 182

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                     +    G +G    +E      +  T E +    + F D        +   
Sbjct: 183 LRS---TRAKLPIGIGQVGKSFRNEVTPGNFIFRTREFEQMELEVFHDPKDSELIFNKYL 239

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLP 297
                                H +                   G     G    T + L 
Sbjct: 240 NKCKTFANLVGIKDENIRIRAHEQDELSHYSSATSDIEYLFPFGWGELLGVANRTDFDLK 299

Query: 298 MSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIW 340
                 G                 +    +G  R++ A++  S+D +          +  
Sbjct: 300 AHMQATGESLEYFDPVTNSKLIPYVIEPSMGLDRLMLALLIDSYDEELVSENDTRIVLKV 359

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P+ VAP+K +++ +        +  E+IY +L K+   + +DD G  IG ++   D +G 
Sbjct: 360 PNGVAPYKFAILPLVKK---LNEKAEEIYKQLLKLNIPITYDDAG-SIGKRYRRQDSIGT 415

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P  + +    ++D  + I++R +  +E +S+  +  +A   F 
Sbjct: 416 PYCITIDYDSLNDECITIRNRDSMSQERISISNLYEFAQKTFK 458


>gi|310287029|ref|YP_003938287.1| glycyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|311063902|ref|YP_003970627.1| blycyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
 gi|309250965|gb|ADO52713.1| glycyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|310866221|gb|ADP35590.1| GlyS Glycyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 506

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 84/493 (17%), Positives = 164/493 (33%), Gaps = 77/493 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +    +WV SG    +     E L+   R     +     E+   
Sbjct: 54  MVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECLKCHKRQRSDKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K          +   +    E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 KLPENGLKD-----IVCPECGTRGEWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQ-- 166

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
                     IF  +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 167 ---------GIF--VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F +P  + ++                    +  H E   +   +    S R +++ + 
Sbjct: 216 EFFVVPGTDEEWHQYWIDTRTRWYTDLGINPENLRHYEHPKE---KLSHYSKRTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T Y L   +   G D        G+     +     G  R + 
Sbjct: 273 FGFQGSDWGELEGIANRTDYDLSAHSKHSGEDLSYFNQAAGEKFVPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           A +  ++D                +     +AP K +++ +    ++       + A L 
Sbjct: 333 AFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-IAHDLAADLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +    + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++
Sbjct: 392 QHEWMIDYDEAGA-IGRRYRREDEIGTPLCITVDFDTIDDQAVTIRERDTMQQERVALDK 450

Query: 434 VINYASHRFSNNR 446
           V +Y + R S  R
Sbjct: 451 VADYVAARVSEKR 463


>gi|319400901|gb|EFV89120.1| glycyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 463

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 124/366 (33%), Gaps = 72/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L  + +           S
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASEWLTDLNI-----------S 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + + L D  E ++            +              +    +        H+E  
Sbjct: 257 EDNMRLRDHDEDELSHYS-------NATTDIEYKFPFGWGELWGIASRTDYDLRQHSEHS 309

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +                       KY  P          + +        +GA RV  A
Sbjct: 310 GEDF---------------------KYHDP-------ETNEKYIPYCIEPSLGADRVTLA 341

Query: 328 VIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +  ++  +G          + +  ++AP+K +++ +            KI+ +LS    
Sbjct: 342 FLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSSEAIKIFEQLSSS-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  +
Sbjct: 398 AIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELETF 456

Query: 438 ASHRFS 443
            + +  
Sbjct: 457 LADKVK 462


>gi|306828547|ref|ZP_07461742.1| histidine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304429346|gb|EFM32431.1| histidine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 426

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 142/444 (31%), Gaps = 57/444 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDVLPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D           DF D  S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 246 NSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSA 300
                              D +  +  D            IE  ++    G +Y   + A
Sbjct: 235 AHFDAVRQMLENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNNLTVCAGGRY-DGLVA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G +          +G+G  R++  +     + +G+  P   A   + +  +    + 
Sbjct: 294 YFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAVLG---EG 339

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +K+
Sbjct: 340 ANVKALQLVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVTVKN 399

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             T     +SL+ +    S  F  
Sbjct: 400 NQTREEVQVSLDAISQNFSEIFEK 423


>gi|325120136|emb|CBZ55690.1| putative threonyl-tRNA synthetase [Neospora caninum Liverpool]
          Length = 608

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 120/396 (30%), Gaps = 94/396 (23%)

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK---MFVSY 181
           R+LP    +    FR E R    G+ R REF   D +      +      ++   +   Y
Sbjct: 212 RHLPLRISEFGRVFRRERRSALCGLFRLREFTQDDGHILCTRSQAVGEITSQLSSILQLY 271

Query: 182 LRIFH------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            R+F       ++ L + P +A + P G   S     L    E+ +  +           
Sbjct: 272 FRVFGIAPELIKVSLGTRPAKASTLPAGAADSA-NAALWREAESWLLDAAAR-------- 322

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                 ++  N  VE+     A      +  L D+     +     +++         +S
Sbjct: 323 ------VLPENFKVEREEGGGAFYGPKLDFSLPDARGRRWQTGTIQVDLLQPPGLERVFS 376

Query: 296 LPMSATFKGADGKDHY----------------------------VQMGSYGIGAMRVVAA 327
              S  +                                     V +    +G++    A
Sbjct: 377 RRHSTLYPSPPSSSSSPSSSSRSPASFSRSPSSPSSLPSSCLPLVLIHRAAVGSLERFLA 436

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD--------- 378
           ++    +G+  +W   +AP K ++  +  H +  +   +K+ ARL +   D         
Sbjct: 437 LLLELRNGELPLW---IAPVKAAVCPVSVHSRESQHYAQKV-ARLLRRSLDSSGAFEKEE 492

Query: 379 ------------VFWDDMGEQIGSQFAVADLLG---FPLQVIVGSKFVSDSKVEI----- 418
                       V  D     + ++     LLG    PL  +VG +      V +     
Sbjct: 493 IEERGEQASTSGVLVDLRPLHLNTKLKD--LLGRRRIPLLFLVGPREEKTEGVTVLTQAW 550

Query: 419 KH-----RLTGIRED-MSLEEVINYASHRFSNNRPV 448
           +      +  G R   +SL E + +         P+
Sbjct: 551 RTSSEDGKKDGERGQFLSLNEAVRFFRELAQPEMPI 586



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 40 YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            +LP G++ L N+  I+RE+Q      E++ P+L    LW  SG +  Y   M  + 
Sbjct: 17 PVFLPDGRQLLANIKGILREQQKLLQFQEVATPSLAQTGLWRRSGHWTHYRANMWTIE 74


>gi|223933432|ref|ZP_03625418.1| histidyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897926|gb|EEF64301.1| histidyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 427

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 138/436 (31%), Gaps = 61/436 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R    +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDLLPQDSAKWQYVENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ ++ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGERHITLRP---EGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F      +      M  +Y   F  LG+K I +   S       
Sbjct: 120 AG--RLRQFHQIGVECFGSNNPATDVETIAM--AYH-FFEELGIKDIRLHLNSLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKDQLSKDSQRRLEENPLRVLDSKEKEDKIAVENAPSILDYLDEEST 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                                          RG++     IF F     G   ++     
Sbjct: 235 AHFEAVKTML-------DSLGIAYVIDTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +GI  P       I +  +    
Sbjct: 288 YDGLVTYFGGPETPAFG-FGMGIERLILVL-----EKQGIELPLDTQ-LDIYIAVLG--- 337

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q        +   + K G     D +  ++ +QF  AD+ G    + +G   +   +V +
Sbjct: 338 QEANGGALDLVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIESGQVVV 397

Query: 419 KHRLTGIREDMSLEEV 434
           K+  T  + + SLE +
Sbjct: 398 KNNQTRSQVETSLEAL 413


>gi|13508093|ref|NP_110042.1| glycyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2500997|sp|P75425|SYG_MYCPN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|1674173|gb|AAB96130.1| glycyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|301633466|gb|ADK87020.1| glycine--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 449

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/489 (13%), Positives = 149/489 (30%), Gaps = 127/489 (25%)

Query: 24  KLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQ 75
           + + R G + Q S    G+   + + PLG      +   +      N+   + +  P + 
Sbjct: 12  QYLKRYGFVFQSSELYNGLANSWDFGPLGAVLKQQIKTALYNFFIKNKRDVLLIDTPIIL 71

Query: 76  SADLWVESGRYDSYGKEM---------LRLADRNDK----------------AMIYGPTH 110
           +  +W  SG   ++   +          R+   +++                      + 
Sbjct: 72  NEQIWKASGHLANFTDALVDCKSCKLRFRVDHLDEQIKSATQWNPKQVNCPNCKANNWSE 131

Query: 111 EEVMTDIFRSHI-----------------------------KSYRNLPFTFYQIQLKFRD 141
                 +F++ I                                R LPF   Q    FR+
Sbjct: 132 VRDFNLLFQTEIGVVNSEKRLVYLRPETAQGIFINFKQLLQLKKRPLPFGVAQFGKSFRN 191

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESG 200
           E+ P   + R REF   +   F   P+ S   +     +     F  L L    ++    
Sbjct: 192 EVTPGNFLFRVREFEQFEMEWF-CNPQASLSVFESQQQAIAHFLFKVLQLNPALVK---- 246

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                  +E+    D  E   + +K                       + Q+        
Sbjct: 247 ------QYEY----DKNELAHYANKTV-------------------DFLFQFPHGLRELW 277

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            + +   FD                       KY+      F G + +     +    +G
Sbjct: 278 GLADRGTFDLEQH------------------QKYAKKPLDFFDGENNEHFIPAVVEPSVG 319

Query: 321 AMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
             R+  A+I SS+  + +          P  + P +I ++ +       ++  + ++  L
Sbjct: 320 IERLFYALIVSSYQQEQLEGEMREVLRLPFHLCPEQIVVLPLVNK---LKETAQTLFEAL 376

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           S+    + ++  G  IG ++  AD +G    +    + + D  V I+ R +  +  + ++
Sbjct: 377 SQTHWRIGFESAG-SIGKRYRKADAIGTKFAITFDFESLEDQAVTIRERDSLKQVRVPIK 435

Query: 433 EVINYASHR 441
           E+  + +  
Sbjct: 436 ELKAWFAQH 444


>gi|302385328|ref|YP_003821150.1| glycyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302195956|gb|ADL03527.1| glycyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 462

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 118/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   PE     +       +     LG+K                
Sbjct: 214 FTFRTREFEQMELEFF-CEPETDLEWFAYWKEFCINWLKTLGIKD--------------- 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E  V     E   F SK   D                  I   +   +     + +   
Sbjct: 258 DEMRVRDHEKEELSFYSKATSD------------------IEFLFPFGWGELWGIADRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +D                     G   +      F     + +   +    +GA RV  A
Sbjct: 300 YDLTQHQNTS-------------GQDLT-----YFDDEKKERYVPYVVEPSLGADRVTLA 341

Query: 328 VIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + I          +  ++AP KI ++ +        D  EK+Y  L K   +
Sbjct: 342 FLCAAYDEEEIAEGDVRTVLHFHPAIAPVKIGVLPLSKK---LNDGAEKVYEELCKY-YN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V        D  V ++ R T  +  + + E+ +Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDFAVTVRDRDTMDQVRVPIAELKSYF 456

Query: 439 SHRFS 443
             +F 
Sbjct: 457 EDKFR 461


>gi|227827123|ref|YP_002828902.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|227458918|gb|ACP37604.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
          Length = 484

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 168/507 (33%), Gaps = 99/507 (19%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIH-------QHSKGIYSWLPLGQKALDNV 53
           MR+      ++ ++    +I   +  LR   ++       ++  G   WLP G      +
Sbjct: 1   MRQYNKLSKMMSQSKSKQDI---ERFLRNFYVNSAEIYKGRNVSGFIDWLPPGAMLRQKI 57

Query: 54  NAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---------EMLRL------ 96
                    +       M   T+    ++  SG   ++              R+      
Sbjct: 58  IDSWINFFIKKIPNIFLMDGSTILPLSVFEASGHLANFTDPVIKCPKCSNTYRVDHLLKE 117

Query: 97  -----------ADRNDKAM-------------------IYGPTHEEVMTDIFRSHIKSYR 126
                       D  D+ +                      P   + +   F +      
Sbjct: 118 TNGKLICPRDLTDLKDQEIKQKSLMLELTVGLADEINAALRPETAQNIYINFMNFKAIGL 177

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-YNKMFVSYLRIF 185
            LPF   QI   +R+E+ PR    R REF+  +   F L    + H  Y+ +    L IF
Sbjct: 178 KLPFAIAQIGRSYRNEISPRGS--RLREFVQMEIEEFVLPFHLNSHPLYDNVKGIRLPIF 235

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +    ++I M        G + +  +      E          +  +P     F      
Sbjct: 236 YEE--QTIEMELNEAVKKGLVPNIRLAFWIGRE----WQWLTNELGLPGNKIRFR----- 284

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG- 304
             +  +  A Y+  +      + D   E    + R           T Y L + +   G 
Sbjct: 285 -IVPSEERAFYSKGTVDVEVNMEDDWVEIIGNAYR-----------TDYDLTVHSKHSGA 332

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-------GIIWPDSVAPFKISLINI 354
               +G   +V   S+G+   R+  AV+  ++D             P  +AP +I + +I
Sbjct: 333 NLSENGTIPHVIEPSFGLD--RIAIAVLLLNYDPNPSDRNWPLFRIPYKIAPLEIGIASI 390

Query: 355 KAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
              D+      EK+   L  +        + G +I +Q+A AD LG PL + + SK + +
Sbjct: 391 HHSDEYIN-IAEKVDLILRSLDYVTFKLFERG-KIDAQYAKADTLGIPLVITIDSKTLEE 448

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASH 440
           + V I++R T  +  +++ E+     +
Sbjct: 449 NTVTIRNRDTKAQIRVNIGEIAQAVKN 475


>gi|170760063|ref|YP_001788858.1| glycyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407052|gb|ACA55463.1| glycine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 463

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 120/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N            LG+    +R        D S
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFNYWKDYCWNFLINLGINKENIRF------RDHS 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                         E + + +  S    +  +            +  
Sbjct: 268 QE-------------------------ELSHYSNATSDIEFLFPFGWGELWGVADRTDFD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E+                           +     K+ Y        +GA RVV 
Sbjct: 303 LKKHMEHSGE---------------------DLNYLDPTTKERYVPYCIEPSLGADRVVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        D  +++Y+ LSK   
Sbjct: 342 AFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LSDKSQEVYSMLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R T  +  +S+ E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRDTMNQIRVSINELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEDKLE 462


>gi|212544894|ref|XP_002152601.1| glycyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
 gi|210065570|gb|EEA19664.1| glycyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
          Length = 552

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 125/384 (32%), Gaps = 69/384 (17%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK--HSYNKMFVSYLRIF 185
           +PF    +   FR+E+ PR G++R REFLM +   F + PEG K  H ++++    L   
Sbjct: 150 MPFASASVGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHHRFDEIKDLRLNFL 208

Query: 186 HR---------------------------LGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            R                           LG     +      IG D S          E
Sbjct: 209 DRDTQLSGKTRVQNISIEAVSKKLVDNETLGYFLGRIYLFLLRIGVDPSKLRFRQHMANE 268

Query: 219 TQVFCSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              + +  +    + S          D  + +  V                 L       
Sbjct: 269 MAHYAADCWDAELLTSYGWIECVGCADRSAYDLTVHSKKTGEPLIVREPRRNLGQHSVNM 328

Query: 275 KRVSARG---IEVGHIFYFGTKYSLPM-------------SATFKG-----ADGKDHYVQ 313
           +++  +     +   + YF   Y+  +              + F G       G+   + 
Sbjct: 329 QKLWNKPCLHWDKQSVKYFQRPYNKTLISLLRFPGWYLMEKSMFLGSLSSLKSGQSCKMS 388

Query: 314 MGSYGIGAMRVV---AAVIESSHDGKGII----------WPDSVAPFKISLINIKAHDQV 360
           + +  + +  ++      I       GI+           P  VA  K+ ++ + ++   
Sbjct: 389 VNTLLMSSSHLLILGGFFIVFWSTFIGIVPGDVARGVLSLPLLVASTKVLIVPL-SNLPT 447

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 KI   L ++G     DD G  IG ++A  D LG PL + +    V D  + ++ 
Sbjct: 448 FVPIIRKISQNLRRLGISCRVDDSGASIGKRYARNDELGIPLGITIDFDTVKDDSITLRE 507

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R +  +   S++E+I        N
Sbjct: 508 RDSTRQVRASIDEIIASIKSLVDN 531


>gi|166364046|ref|YP_001656319.1| seryl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|189083574|sp|B0JTT9|SYS_MICAN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166086419|dbj|BAG01127.1| seryl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 427

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 12/212 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + + LG      +   + +     G  E+  P L ++D    +G+   + +E  +   
Sbjct: 168 FVNLIALGAALERALINFMLDRHIVAGYTEVLPPILINSDSLRGTGQLPKFAEESFKC-- 225

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             D  +   PT E  +T+++R  I S   LP         FR E     +   G++R  +
Sbjct: 226 -RDDELWLAPTAEVPVTNLYRDEILSSEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQ 284

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +     + P+ S   +  +  +   I   L L    +   SG +G   +     E 
Sbjct: 285 FNKVEMVKI-VHPDASAQEHESLVANAEAILQALQLPYRVIELCSGDLGFSAAKCYDLEV 343

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            + +     ++    +F DF     N  F + 
Sbjct: 344 WLPSANTYREISSCSNFRDFQARRANIRFKEK 375


>gi|254820463|ref|ZP_05225464.1| histidyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 420

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 137/435 (31%), Gaps = 45/435 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V   +     R G  ++ +P  +   L+        D   
Sbjct: 4   FSAPKGVPDYVPPDSAQFVAVRDGLLGAARRAGYGDIELPIFEDTALFARGVGESTDVVS 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 64  KEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG-- 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 121 RYRQLQQVGVEAIGVDDPALDAEVIAVADA---GFRSLGLDGFRLEITSLGDDSCRPAYR 177

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  EF+      +     ++      +  +  +   + +   ++    +  A       
Sbjct: 178 ELLQEFLFGLSLDDETRRRAEINPLRVLDDKRPEVRAMTADAPVLLDHLSDAAKQHFDTV 237

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG---ADGKDH 310
               D+L     ++ R             E  H    G +  +     + G     G   
Sbjct: 238 LAHLDALGVPYVINPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRELGGQD 296

Query: 311 YVQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +G +G+G  R + A+  E    G       + A  ++  + +    ++       + 
Sbjct: 297 LSGIG-FGLGVDRTLLALRAEGKSVG-------TAARCEVFGVPLSEQAKLRLAV---LA 345

Query: 370 ARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +L   G  V     D G + G+    AD  G  + +++G + +    V +K   TG + 
Sbjct: 346 GQLRSAGVRVDLAYGDRGLK-GAM-RAADRSGARVALVLGDRDIEAGTVGVKDLGTGEQS 403

Query: 428 DMSLEEVINYASHRF 442
            ++ E V+     R 
Sbjct: 404 AVASETVVADVLARL 418


>gi|295106322|emb|CBL03865.1| seryl-tRNA synthetase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 429

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 13/205 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P + +A+    +G+   + +++        + +
Sbjct: 173 LGARLERALINFMADTHASRGYKEWWCPAMANAETLTGTGQLPKFEEDLFHTT----EGL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +     LP  +      FR+E     R   G++R  +F   + 
Sbjct: 229 YLIPTAEVQLTNIHAGEVLDAGQLPLKYCAFTPCFREEAGSAGRDTRGLIRVHQFDKVEM 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             +   PE S      M      I   LGL    +   +G IG   +     E  + +  
Sbjct: 289 VKY-AKPEESFDDLEAMVADAENILQLLGLPYRVISLCTGDIGFSAAKTYDLEVWLPSYN 347

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
           G  ++    +  DF     N  + D
Sbjct: 348 GYKEISSCSNCTDFQARRANIKYRD 372


>gi|170767377|ref|ZP_02901830.1| histidyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170123711|gb|EDS92642.1| histidyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 424

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 132/438 (30%), Gaps = 47/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    + +E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDDESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAALALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFRKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRFS 443
           +  ++ + V  +     +
Sbjct: 407 QTAVAQDSVAAHLRTLLA 424


>gi|332311962|gb|EGJ25057.1| Histidyl-tRNA synthetase [Listeria monocytogenes str. Scott A]
          Length = 427

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 143/436 (32%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    ++        E+  P  +  +L+        D   K
Sbjct: 6   QLPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 66  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 122

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL  I ++     +G   S  
Sbjct: 123 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMEFFRKIGL--INIKLVINSLGDKESRL 176

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 177 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 236

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 237 YFENVKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 296

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 297 EFGGPDTPGMG-FGIGVERILLAL-----EKADIKIPAK-KPLEVYVITAQPEAEL---K 346

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 347 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 406

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++    +
Sbjct: 407 EQEAVSETTILEKLIN 422


>gi|22299441|ref|NP_682688.1| histidyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|32130104|sp|Q8DHP7|SYH_THEEB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|22295624|dbj|BAC09450.1| histidyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 428

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/425 (15%), Positives = 127/425 (29%), Gaps = 39/425 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G    LP  +     +  I R+  +R    E+  P  +   L+    G   D   K
Sbjct: 4   QAPRGTRDILPAERVYWQYLETIARQILDRAAYREICTPIFEQTPLFERGIGEATDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR  +++   P     +   +  H    +      + +   FR E RP+ G  R
Sbjct: 64  EMYTFRDRAQRSLTLRPEGTAGVVRAYIEHGLHSQGGVQRLWYLGPMFRYE-RPQSG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +      +    L I   LGLK + +   S     D S    
Sbjct: 121 YRQFHQLGVEVLGSADPRADAE---VIAVALDILQALGLKQLTLMLNSVGDREDRSAYRQ 177

Query: 212 VLADT-GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            L D     +     D  +    +     D        + +            +   F+ 
Sbjct: 178 ALVDYLTPYKADLDPDSQERLHRNPLRILDSKDPRTQAIVKEAPRLLDYLSARSRAHFEQ 237

Query: 271 LPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDH---------------Y 311
           +    +      ++      G  Y    +        G +G                   
Sbjct: 238 VQSLLQALGIAYQINPALVRGLDYYTHTAFEFQDMSLGNEGTVCGGGRYDHLVEELGGPP 297

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                + +G  R++  + +          P    P+    + +             +  +
Sbjct: 298 TPAIGWAMGLERLILLLRDR-------PLPARNQPY----LYMVTRGAAAERQGLILAQQ 346

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D  G   G Q   AD +G  + +++G    +D  V++K   +G +  +  
Sbjct: 347 LRHQGYTVDVDLSGSAFGKQVKRADRVGATVCLVIGESEATDGTVQVKWLASGEQVLVPQ 406

Query: 432 EEVIN 436
           +E+++
Sbjct: 407 QELLS 411


>gi|320539277|ref|ZP_08038947.1| histidyl tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030669|gb|EFW12678.1| histidyl tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 424

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 140/431 (32%), Gaps = 33/431 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPKDTALWQRIEGTLKKVLDGYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLHGPDIDAE---LILLTARWWKALGIAE-HVKLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A  G  +        D            + S N  V+         S+  +E      
Sbjct: 178 RNALVGFLEQHVDVLDEDCKRRMYRNPLRVLDSKNPEVQALLNDAPRLSEYLDEASCAHF 237

Query: 272 -PENKRVSARGIEVGHIFYF--GTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM-- 322
               + ++  GI          G  Y          T  GA G       G Y       
Sbjct: 238 TGLCELLAQAGIPYTINECLVRGLDYYNRTVFEWVTTSLGAQGT--VCAGGRYDSLVEQL 295

Query: 323 --RVVAAVIESSHDGKGIIW-----PDSVAP--FKISLINIKAHDQ-VCRDACEKIYARL 372
             R V AV  +    + ++      PD  AP    + LI+  A  Q       E++   L
Sbjct: 296 GGRAVPAVGFAMGLERLVLLVQALNPDFTAPPTIDVYLISSGAGAQSAAMQLAERVRDAL 355

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++     +     +   Q   AD  G  + +I+G   V+  +V +K   +G +E ++  
Sbjct: 356 PQLKLMTNYGGGNFK--KQITRADKWGACVALILGENEVAAQQVVVKDLRSGEQETLAQS 413

Query: 433 EVINYASHRFS 443
           E     +   S
Sbjct: 414 ETAARLAQMLS 424


>gi|313608679|gb|EFR84516.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
          Length = 427

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    +         E+  P  +  +L+        D   K
Sbjct: 6   QLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 66  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 122

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 123 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMTFFKKIGLTNIKLVINS--LGDKESRL 176

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 177 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 236

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 237 YFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 296

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 297 EFGGPDTPGMG-FGIGVERILLAL-----EKADIEIPSK-KPLEVYVITAQPEAEL---K 346

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 347 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 406

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++   ++
Sbjct: 407 EQEAVSETTILEKLTN 422


>gi|125624984|ref|YP_001033467.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166228557|sp|A2RN96|SYH_LACLM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|124493792|emb|CAL98784.1| HisS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071783|gb|ADJ61183.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 430

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 140/431 (32%), Gaps = 51/431 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRY-DSYGK 91
           Q  KG    LP        +  I R   N     E+  P  +S +L+   +G   D   K
Sbjct: 4   QKPKGTADLLPAETAKWQYIEEIARGVFNDYNFKEIRTPMFESYELFSRATGETSDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDELRPR 146
           EM    D+  + +   P   E      R++I++         P   +     FR E RP+
Sbjct: 64  EMYDFEDKGGRHIALRP---EGTASAVRAYIENKLYAPEVVKPVKLWYDAPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F         L           M  +   +F +LG+    ++     +G   
Sbjct: 120 SG--RLRQFHQFGVECLGLKNPAVDVEIIAMADT---LFRQLGIS--GVKLSLNTLGDME 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +    A       F ++   D            + S  +          A  D  NE 
Sbjct: 173 SRKAYRQALIDYLTPFENQLSEDSRRRLNENPLRVLDSKEAEDIAIVKNAPAILDYLNET 232

Query: 267 LFDSLPENK-----RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG------ 315
                 E K           I+   +      Y+  +       DGK+  V  G      
Sbjct: 233 SKAYFEEVKALLEALNIEYTIDSNMVRGL-DYYNDTIFEFIVNFDGKELTVCGGGRYDGL 291

Query: 316 ------------SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                        +G+G  R++  +I    +   I  P+      + +  +    +    
Sbjct: 292 VEYFDGPATPAFGFGLGIERLL--MIAEKQEINFI--PEET--LDVYIAVMG---EKANL 342

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L +    V  D    ++G+QF  A+ LG  L + +G   V   ++++KH  T
Sbjct: 343 EATKLAESLREQAFKVERDFSNRKLGAQFKTAEKLGAELIITLGEDEVRTGQIKVKHNQT 402

Query: 424 GIREDMSLEEV 434
             + + +L+ V
Sbjct: 403 RKQVETTLQAV 413


>gi|257059086|ref|YP_003136974.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256589252|gb|ACV00139.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 429

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 126/429 (29%), Gaps = 30/429 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
            G    LP        V  I  E  +R    E+  P  +   L+    G   D  GKEM 
Sbjct: 8   PGTRDILPEEIGYWQYVETITTEILSRAMYQEIRAPIFEQTSLFERGIGEATDVVGKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR D+++   P     +   +  +           +     FR E RP+ G  R R+
Sbjct: 68  TFKDRGDRSVTLRPEGTAGVVRAYLQNNLYATGGVQRLWYQGPMFRYE-RPQAG--RQRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F              +      +      I  +LGL+S+  + +   +G     +    A
Sbjct: 125 FHQIGLELLGSGDPRADVE---VIALATDILKKLGLQSL--KLDLNSVGDRNDRQRYREA 179

Query: 215 DTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   +     D  D    +     D        + Q            ++K FD +
Sbjct: 180 LVNYFLPYKNELDPDSQDRLERNPLRILDSKNQRTKEINQNAPSILQYLGDQSKKHFDQV 239

Query: 272 PENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRV----- 324
            +         ++      G  Y               +      G Y      +     
Sbjct: 240 QQLLTDLNISYQLNPCLVRGLDYYTHTAFEIQSDDLGAQATVCGGGRYDGLVAELGGPDT 299

Query: 325 --VAAVIESSHDGKGIIWPD--SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             V   I      + II        P  +  I I +  +        +  +L   G  V 
Sbjct: 300 PAVGWAIGM---ERLIILLKQRQTVPHCVPDIYIVSKGEQAEAQALILAQKLRFEGLTVE 356

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA-- 438
            D  G   G QF  AD  G    +++G +  +   +++K   T  +E +   ++++    
Sbjct: 357 LDLSGSAFGKQFKRADRSGAIACIVLGDEEAATQTLQLKWLATKQQETLDQTQLVSEIGE 416

Query: 439 -SHRFSNNR 446
              + + ++
Sbjct: 417 LKAQLARHK 425


>gi|303241216|ref|ZP_07327723.1| glycyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302591227|gb|EFL60968.1| glycyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 460

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 79/498 (15%), Positives = 148/498 (29%), Gaps = 141/498 (28%)

Query: 28  RTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+    R    Q R  + E+    L +   
Sbjct: 15  RYGFIFQGSDIYGGLANTWDYGPLGTRLKNNIKDAWRYYFIQIRDNSFELDSDILMNPTT 74

Query: 80  WVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEV----------------------- 113
           W  SG  +S+   +L   +   R+   ++     E                         
Sbjct: 75  WEASGHLESFTDPLLDCKECKTRHRADILINDFDESANADAMTEDEMVKFIKDKKVPCPK 134

Query: 114 -----------MTDIFRSHIKSYRN-----------------------------LPFTFY 133
                         +F +   S +                              LPF+  
Sbjct: 135 CGKSNLTDIRKFNLMFSTQCGSTQETSNTIYLRPENAQGEYVNFLNVLRTMRTKLPFSIG 194

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           QI   FR+E+       R+ EF   +  +F    +           +    F   G+K  
Sbjct: 195 QIGKAFRNEITKGKFTFRTIEFEQMEYQTFCKQGDD---------EALYEYFKDYGIKFF 245

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                   IG    H           Q    K    +   + + ++        I     
Sbjct: 246 EF------IGLSKEH----------LQFRDHKKLAHYAKAACDIEYLFPFGWGEI----- 284

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                 +  HN   FD                       ++S      F     + +   
Sbjct: 285 ------NGTHNRTDFDLQRH------------------QEFSGKNMEYFDTETNEKYIPY 320

Query: 314 MGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R+V AV+  S   +          +    S+AP K++++ +        + 
Sbjct: 321 VIESTYGLDRLVLAVLFESLLEEELENGETRQVLKIKPSLAPIKVNVLPLIKK--RHAEK 378

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++IY  L K    V +DD G  IG ++   D +G P  V +    + ++ V ++ R T 
Sbjct: 379 AQEIYNELKKY-FMVSYDDAGN-IGKRYRRGDAIGTPYSVTIDDTTLDNNTVTVRERNTM 436

Query: 425 IREDMSLEEVINYASHRF 442
            +  ++++++  Y     
Sbjct: 437 HQVTITVDKLKCYLLENI 454


>gi|161507424|ref|YP_001577378.1| histidyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048276|sp|A8YUZ9|SYH_LACH4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160348413|gb|ABX27087.1| Histidyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 428

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 143/438 (32%), Gaps = 62/438 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSSNPLADVQTIMMG---HDLLGELGVKNYQLHINTLGNEQVRKGY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+  +LS +          ++  SKD  D     +     D +  NS    
Sbjct: 178 HDALVNYFTPVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDNSKANF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +          +  + D            + E         E       G +Y      
Sbjct: 238 ESILKMLDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKA 356
             +  +G +       +GIG  R++  V+E         +GI            + NI  
Sbjct: 294 LVEEFNGPETPAV--GFGIGEERLML-VLEKQNPELFKNEGI---------DFFITNIG- 340

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +       +I   L K G +  +D   +++  QF  AD  G    + +G K +++  +
Sbjct: 341 --EGTAQKAIEIARSLRKQGFEADFDVNQKKLKGQFKKADREGAKYVITLGEKELANGVL 398

Query: 417 EIKHRLTGIREDMSLEEV 434
            IK    G   D+SLE++
Sbjct: 399 NIKRLADGKTIDLSLEDI 416


>gi|116490653|ref|YP_810197.1| histidyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|290890067|ref|ZP_06553150.1| hypothetical protein AWRIB429_0540 [Oenococcus oeni AWRIB429]
 gi|116091378|gb|ABJ56532.1| histidyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|290480258|gb|EFD88899.1| hypothetical protein AWRIB429_0540 [Oenococcus oeni AWRIB429]
          Length = 422

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 140/424 (33%), Gaps = 33/424 (7%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLW-VESG-RYDS 88
           + Q  KG    LP  Q   D +N   +E    R     +  P  ++ +++   SG   D 
Sbjct: 5   LFQKPKGTADLLPAVQAIWDKINRAAQEIFGRRYRFGRIDTPLFENYEIFARTSGDSSDV 64

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ ++ +   P     +   +            P   Y ++  FR E RP+
Sbjct: 65  VSKEMYDFYDKGNRHLALRPEGTAGVVRAYVENKLYGPEYEKPVNLYYLESMFRYE-RPQ 123

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R+REF      SF            +M + +   F    L +  ++  S  +G + 
Sbjct: 124 AG--RTREFHQLGVESFGSDSPFLDAQIIQMAIDF---FQEFNLDNFIVKINS--LGDEE 176

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S      A     + F  +   D     ++     + S +   ++         D  N++
Sbjct: 177 SRTNYRSALVDYLKQFEDRLSNDSKNRLKSNPLRILDSKDPKDQELLIDAPKILDYLNQE 236

Query: 267 LFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             D   +  +         E+ +    G  Y        +  D K         G     
Sbjct: 237 SKDRFKKVTKALDDFDISYEIDNKLVRGLDYYNNTIFEIETRDPKLKSSATVCGGG---- 292

Query: 324 VVAAVIESSHD------GKGIIWPDSVAPF-KI-----SLINIKAHDQVCRDACEKIYAR 371
             + ++E          G GI     +    +I     + + I   D+   +    +  R
Sbjct: 293 RYSGMVEEFGGPETPAIGFGIGLERLITLVGQIEDQDHNDVYIVQTDKSVNEFANLLAKR 352

Query: 372 LS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L  K    V  D     + SQ   AD       +++G + V + KV IK    G ++ + 
Sbjct: 353 LREKFHFGVLLDYTDRSMKSQLKSADRTKSRYSIVIGEEEVKNKKVTIKKMADGSQKKIL 412

Query: 431 LEEV 434
           L+++
Sbjct: 413 LDKL 416


>gi|238022770|ref|ZP_04603196.1| hypothetical protein GCWU000324_02681 [Kingella oralis ATCC 51147]
 gi|237865973|gb|EEP67109.1| hypothetical protein GCWU000324_02681 [Kingella oralis ATCC 51147]
          Length = 430

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 89/252 (35%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D E+  H  L    G+  + +    G    L  G+ A     +   + +    + G  E 
Sbjct: 135 DFEVKDHVDLGAALGLDFEKAAELSGARFSLMKGKVARLHRALAQFMLDTHTQQHGYTEC 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + S    + +G+   + +++  +    D +  +    PT E  +T+I R  I + +
Sbjct: 195 YTPYIVSDAALLGTGQLPKFAEDLFHVTRGGDESKLSQYLIPTAEVTLTNIVRDTIVAEK 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP  F      FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DLPLKFTAHSPCFRSEAGSHGKDTRGLIRQHQFDKVEMVQV-VQPENSYAALEEMVSHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKLLELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F      N ++ 
Sbjct: 374 FKGEDGKNRLLH 385


>gi|225023841|ref|ZP_03713033.1| hypothetical protein EIKCOROL_00707 [Eikenella corrodens ATCC
           23834]
 gi|224943315|gb|EEG24524.1| hypothetical protein EIKCOROL_00707 [Eikenella corrodens ATCC
           23834]
          Length = 430

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 86/252 (34%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D EI  H  L  + G+  + +    G    L  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEKLGLDFETAAALSGARFSLMKGQVARLHRALAQFMLDTHTQQHGYTEC 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + S    + +G+   +G+++  +    D +       PT E  +T+  R  I    
Sbjct: 195 YTPYIVSDSTLIGTGQLPKFGEDLFHVIRGGDESKTKQYLIPTAEVTLTNTVRERILPAD 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +       P+ S  +  +M     
Sbjct: 255 ALPLKLTAHSPCFRSEAGSHGKDTRGLIRQHQFDKVEMVQI-AHPDHSYDALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           RI   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 RILQLLELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDEDGKNRLVH 385


>gi|56686037|dbj|BAD79259.1| seryl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|81168141|gb|ABB56481.1| seryl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 443

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 12/211 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G      + A + + Q   G  E++ P L ++     SG+   + +E  R  D
Sbjct: 182 FVTLLGAGAALERALIAFMLDRQTAAGYTEVAPPYLINSASLTASGQLPKFSEESFR-CD 240

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           R+D  +   PT E  +T ++R  I S   LP  +      FR E     R   G++R  +
Sbjct: 241 RDD--LWLTPTAEVPLTSLYRDEILSADQLPLRYCAYTPCFRREAGSYGRDTRGLIRLHQ 298

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F + P+ S+ ++ ++  +   I   L L    +   +G +G         E 
Sbjct: 299 FNKVELYQF-VHPDHSEAAHQQLLANAEAILQALELPYRTIELCTGDLGFSAQKTYDIEV 357

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +     ++    +  DF     N  F +
Sbjct: 358 WLPSAGRYREISSCSNCGDFQARRANIRFKE 388


>gi|312129532|ref|YP_003996872.1| glycyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311906078|gb|ADQ16519.1| glycyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 485

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 122/340 (35%), Gaps = 64/340 (18%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R    R REF   +   F + P 
Sbjct: 187 TAQGIFVNFLNVQKSGRMKVPFGIAQIGKAFRNEIVARQFTFRMREFEQMEMQFF-VRPG 245

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                Y K   + +R    +GL +  ++           H+   LA      V       
Sbjct: 246 SEMEWYEKWKETRMRFHKAIGLPAEKLK----------YHDHEKLAHYANAAV------- 288

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                              I  ++   +     +H+   FD     +    +        
Sbjct: 289 ------------------DIEFEFPFGFREIEGIHSRTDFDLRNHQELSKKK-------- 322

Query: 289 YFGTKYSLPMSATFKGADGK---DHYVQMGSYGIGAMRVVAAVIESSHDGK-------GI 338
               +Y  P      G DGK   ++   +    +GA R+  A   +++  +        +
Sbjct: 323 ---LQYFDP----DLGEDGKAIGNYIPYVIETSVGADRMFLAAFCNAYTVETGEKERTYL 375

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
               +++P K +++ +   D +  +  ++I A L ++     +D+ G  IG ++   DL+
Sbjct: 376 KLHPALSPIKAAVLPLVKKDGLA-EKAQEIAASL-RLHFRTVYDEGGA-IGKRYTRQDLI 432

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G P  + V  + + ++ V I+HR +  +E + ++++    
Sbjct: 433 GTPFCIAVDYETMENNTVTIRHRDSMEQERVPIDQLKEKI 472


>gi|239917142|ref|YP_002956700.1| glycyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|281414391|ref|ZP_06246133.1| glycyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|239838349|gb|ACS30146.1| glycyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
          Length = 460

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 121/361 (33%), Gaps = 69/361 (19%)

Query: 98  DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           D  +      P T + +  +       + +  PF   QI   FR+E+ P   + R+REF 
Sbjct: 151 DNEEGLHYLRPETAQGIFVNFLNVLGAARKKPPFGIGQIGKAFRNEITPGNFIFRTREFE 210

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F + P  +   +++        F  LG+    +R            +F V AD 
Sbjct: 211 QMEIEYF-VPPAEAGQHFDRWVEDCWDWFIDLGIDPAHLR------------KFDVPAD- 256

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                                              ++               D   E   
Sbjct: 257 -------------------------------ERAHYSDATIDLEYDFGFTGGDGWGELMG 285

Query: 277 VSARG-IEVG-HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           ++ R   ++G H  + GTK        F  A+ + +   +     G  R + A +  ++ 
Sbjct: 286 IANRTDYDLGRHTEHSGTK-----MQYFDQANNEHYTPYVIEPSFGLTRAMMAFLVDAYA 340

Query: 335 GKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                           +     +AP K +++ +    ++   A + + A L  +  ++  
Sbjct: 341 EDEAPNAKGGVDVRTVLKLDPRLAPVKAAVLPLSRKAELQ-PATQSLAAELRGLW-NIET 398

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++   D +G P  + V    + D  V I+ R T  +E ++L +V +Y   R
Sbjct: 399 DDSGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRERDTMAQERVALSQVKSYLLER 457

Query: 442 F 442
            
Sbjct: 458 L 458


>gi|90410874|ref|ZP_01218888.1| histidyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90328087|gb|EAS44398.1| histidyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 422

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 138/442 (31%), Gaps = 58/442 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   I++  +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGTIKQVVSAYGYNEIRMPIVESTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNCDSLTLRPEGTAGCVRAGIQNGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQVGVEVFGLNGPDVDAELIMM---TARLWRELGINQ-HVRLELNSIGS-----LE 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E  +   +  +D                    +               +  D  
Sbjct: 173 ARATYREALIAFLEQHLDVLDEDCKRRMHTNPLRVLDTKNPAVQEILVDAPKLSEYLDDD 232

Query: 272 ------PENKRVSARGIEVGHIFYF--GTKY-----------SLPMSATFKGA------- 305
                    + + A GIE         G  Y           SL    T  G        
Sbjct: 233 SKAHFAGLCELLDAAGIEYQVNERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLV 292

Query: 306 ---DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               GK        + +G  R+V  ++  + +   +    SV  + +++       +   
Sbjct: 293 EQLGGKATPAV--GFAMGVERLV--LLMETLELADVR--RSVDAYVVTV------GEGTM 340

Query: 363 DACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            A  K+  +L +   G  V     G     QF  AD +G  + +++G   ++D+ V +K 
Sbjct: 341 MAGMKLAEKLRENVPGLRVMNHFGGGNFKKQFKRADNVGAAIALVLGENEIADNTVVVKD 400

Query: 421 RLTGIREDMSLEEVINYASHRF 442
              G +  M+ +EV    +   
Sbjct: 401 LRGGEQTTMAQDEVAAKLAELI 422


>gi|158320290|ref|YP_001512797.1| glycyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|254781873|sp|A8MG73|SYG_ALKOO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|158140489|gb|ABW18801.1| glycyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 462

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 131/366 (35%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++ ++ S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSSTEIFLRPETAQGIFVNFKNVLRTSRKKVPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N     Y + F +  L ++           +L+
Sbjct: 214 FTFRTREFEQMELE-FFCKPGEDLEWFN-----YWKEFCKNWLLNL-----------NLT 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + + D  E ++                      +      ++   +     V +   
Sbjct: 257 EENLRIRDHAEEELSHYSK-----------------ATTDFEYRFPFGWGELWGVADRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVA 326
           FD                H  + G  +      T++     + +        +G  RV  
Sbjct: 300 FDLK-------------QHSEHSGEDF------TYQDPITNEKYVPYCIEPSVGVDRVAL 340

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + I             ++APFK +++ +       +D   ++Y  LS+   
Sbjct: 341 AFLVDAYDEEVIDEKDTRVVLRLHPALAPFKAAVLPLTKK---LKDQALELYETLSE-NY 396

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V +D+ G  IG ++   D +G P  +      + D  V I+HR +  +E + + E+  Y
Sbjct: 397 MVDYDEAG-SIGKRYRRHDEIGTPFCITFDYDSLEDQCVTIRHRDSMEQERIQISELTTY 455

Query: 438 ASHRFS 443
            + +  
Sbjct: 456 LNEKLK 461


>gi|322376011|ref|ZP_08050521.1| histidine--tRNA ligase [Streptococcus sp. C300]
 gi|321278961|gb|EFX56004.1| histidine--tRNA ligase [Streptococcus sp. C300]
          Length = 426

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LG---EGANVKALELVQTLRQQGFKAERDYLNRKLKAQFKSADIFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SL+ +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLDAISQNFSEIFEK 423


>gi|300771444|ref|ZP_07081319.1| glycine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761433|gb|EFK58254.1| glycine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 489

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 122/366 (33%), Gaps = 74/366 (20%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M        AD  ++  +   T + +  +           +PF   QI   FR+E+  R 
Sbjct: 170 MFATQMGAMADGAEQVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEVIARQ 229

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            +MR REF   +   F   P      YNK   + L+    LG      R           
Sbjct: 230 FIMRMREFEQMEMQFF-CRPGTEMEWYNKWKETRLKWHLALGFNPDNYR----------Y 278

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+   LA      V                          I   +   +     +H+   
Sbjct: 279 HDHDKLAHYANAAV-------------------------DIEFNFPFGFKEVEGIHSRTD 313

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                       ++S      F     +++   +    IG  R+   
Sbjct: 314 FDLKQH------------------QEFSKKKMQYFDTEINQNYIPYVIETSIGLDRLFLT 355

Query: 328 VIESS-------HDGKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           V+ +S        D K      + +P ++AP K +++ +   D    +   +I A L K+
Sbjct: 356 VLCNSLVQEDLSTDEKQDSRVVLKFPPALAPVKAAILPLTKKD-GLPEKAREIMATL-KL 413

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +V +D+    IG ++   D +G P  + V  + + D+ V I+ R T  +E +++ ++ 
Sbjct: 414 DYNVQYDEKDA-IGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRDRDTMKQERVAIADLE 472

Query: 436 NYASHR 441
              S  
Sbjct: 473 RIVSDL 478


>gi|294011256|ref|YP_003544716.1| seryl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292674586|dbj|BAI96104.1| seryl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 425

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 14/202 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + + Q    G  E++ P L   +    +G+   + +++ R  D       
Sbjct: 171 ARLHRALAQFMLDRQSRENGYEEVNPPLLVKDEALFGTGQLPKFAEDLFRTTD----GRW 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I    +LP     +   FR E     R   G +R  +F   +  
Sbjct: 227 LIPTAEVSLTNLVREQIVPTESLPLRLTALTPCFRSEAGSAGRDTRGFIRQHQFEKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL----SHEFIVLADTG 217
           +    PE S+  + +M  +   +   LGL    M   +G +G         E  + +   
Sbjct: 287 AI-CKPEESEAEHERMCAAAEGVLQALGLPYRKMLLCTGDMGFGARKTWDLEVWLPSQQT 345

Query: 218 ETQVFCSKDFMDFPIPSENTDF 239
             ++    +  DF     N  +
Sbjct: 346 YREISSVSNCGDFQARRMNARY 367


>gi|332654808|ref|ZP_08420550.1| histidine--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516151|gb|EGJ45759.1| histidine--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 455

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 144/453 (31%), Gaps = 51/453 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   D +  I+RE  +  G   +  P ++++++ +  G  ++  K++ R 
Sbjct: 10  SGFMELLPARQAQFDRMVEILRETYSLYGFTPLDTPLIEASEVLLAKGGGET-EKQIYRF 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             + D  +         +      +  S    PF  +QI   +R E R + G  R REF 
Sbjct: 69  M-KGDTDLSLRFDLTVPLAKYVALNY-SKLTFPFRRFQIGKVYRGE-RAQRG--RFREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI-------------- 202
             D            +      + Y   F RLGLK   +R  +  I              
Sbjct: 124 QADIDVIGDGKLDISNEAEIPAIIYQA-FTRLGLKRFQIRVNNRKILNGFYAMLGLTEKS 182

Query: 203 -------------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSI 248
                        G +   E ++  + G T     +      I   N      +      
Sbjct: 183 GEIMRTVDKLDKIGAEKVKELLMEEEIGLTDEQAGEILTFIAITGSNEAVLSALEGYRGR 242

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM----SATFKG 304
            E +       + V        +P+        I  G  +Y GT Y   M          
Sbjct: 243 NEIFDQGLDELNTVVKYLAAFGVPQTHFAVDLTIARGLDYYTGTVYETTMLDHPEIGSIC 302

Query: 305 ADGK-----DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G+     ++Y      G+G    +  +     D   +    + AP  + ++ +     
Sbjct: 303 SGGRYDNLAEYYTDKQLPGVGISIGLTRLFFVLEDQGYLNDALNTAPADVLILPMTDDLS 362

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +   L + G         ++   + + AD L  P  V +G   +S     +K
Sbjct: 363 PAIA----LATTLRQAGIRTQIHAEQKKFKQKISYADKLSIPYAVFLGEDEISSGVCAVK 418

Query: 420 HRLTGIREDMSLEEVINYAS---HRFSNNRPVL 449
              +G +  +S  E +++      + +  +P+L
Sbjct: 419 DLQSGEQVKLSPAEAVSHIQAGLDKLNQGKPIL 451


>gi|256017338|ref|ZP_05431203.1| histidyl-tRNA synthetase [Shigella sp. D9]
 gi|332278333|ref|ZP_08390746.1| histidyl-tRNA synthetase [Shigella sp. D9]
 gi|332100685|gb|EGJ04031.1| histidyl-tRNA synthetase [Shigella sp. D9]
          Length = 424

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDCLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|24414814|emb|CAD55627.1| serine-tRNA ligase [Synechococcus elongatus PCC 7942]
          Length = 438

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 12/211 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G      + A + + Q   G  E++ P L ++     SG+   + +E  R  D
Sbjct: 182 FVTLLGAGAALERALIAFMLDRQTAAGYTEVAPPYLINSASLTASGQLPKFSEESFR-CD 240

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           R+D  +   PT E  +T ++R  I S   LP  +      FR E     R   G++R  +
Sbjct: 241 RDD--LWLTPTAEVPLTSLYRDEILSADQLPLRYCAYTPCFRREAGSYGRDTRGLIRLHQ 298

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F + P+ S+ ++ ++  +   I   L L    +   +G +G         E 
Sbjct: 299 FNKVELYQF-VHPDHSEAAHQQLLANAEAILQALELPYRTIELCTGDLGFSAQKTYDIEV 357

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +     ++    +  DF     N  F +
Sbjct: 358 WLPSAGRYREISSCSNCGDFQARRANIRFKE 388


>gi|116628637|ref|YP_821256.1| histidyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|122266769|sp|Q03IB2|SYH_STRTD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116101914|gb|ABJ67060.1| histidyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|312279288|gb|ADQ63945.1| Histidyl-tRNA synthetase [Streptococcus thermophilus ND03]
          Length = 426

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 135/430 (31%), Gaps = 49/430 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDSAKWQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F+ LG+K + +   S       
Sbjct: 120 AG--RLREFHQLGVECFGSKNPATDVETIAM--AYQ-LFNTLGIKDVTLHLNSLGNTDSR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 LAYRQALIDYLTPMRESLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   A    ++   + D+                IF F T           G  G+
Sbjct: 235 THFDEVR-AMLDSLNIPYVIDTNMVRGLDYYNH----TIFEFITTIDKSELTICAG--GR 287

Query: 309 DHYVQMGSYGIGA----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +     G         +    +    D +GI  P   +   + +  + +        
Sbjct: 288 YDSLVEYFGGPETAGFGFGLGLERLLLVLDKQGIKLPVEES-LDVYIAVLGSG---ANGK 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   +   G     D +G +I +QF  AD       + +G   V    V++K+  T 
Sbjct: 344 ALELVQSIRYQGFKAERDYLGRKIKAQFKSADTFKAKTVITLGESEVESGVVKVKNNATR 403

Query: 425 IREDMSLEEV 434
               +S EE+
Sbjct: 404 EEVTVSFEEL 413


>gi|294101094|ref|YP_003552952.1| YbaK/prolyl-tRNA synthetase associated region [Aminobacterium
           colombiense DSM 12261]
 gi|293616074|gb|ADE56228.1| YbaK/prolyl-tRNA synthetase associated region [Aminobacterium
           colombiense DSM 12261]
          Length = 509

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
             +   ++   G      +    I    ++ A+           +P  +APF + +I   
Sbjct: 365 DALETLYQDQSGSSQKCALWKGWIHLDSIITALARQK------TYPLGLAPFDVDIIVPS 418

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D+   +    +Y  +   G    +DD  E+ G++FA  +L G P +V+VG K  ++  
Sbjct: 419 IKDETAMELATNLYHEMVHQGVVALFDDRNERAGAKFADFELFGIPAKVVVGRK-AAEGI 477

Query: 416 VEIK 419
           VE++
Sbjct: 478 VEVQ 481



 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 74/274 (27%), Gaps = 61/274 (22%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +    P L++ P   +      +LR G       G +S LPLG    DNV       
Sbjct: 1   MRMTTLLTPTLKKEPAGWQDPGAIRLLRGGYALDLHHGEWSLLPLGALLRDNVAWTFIHA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  ++                     +++L                +E +  + + 
Sbjct: 61  FMDGGFQQL---------------------EDLLY--------------RKEGIQLLAQR 85

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP            ELR    ++   E               S+     +   
Sbjct: 86  VVQSYRDLPLRVM--------ELRGGRLLLSGIE------------ASSSEECQKNLLYF 125

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +   + L  + +   +      L  E   +A   E +   S + ++ P    +    
Sbjct: 126 IENLLENMALSGVKIEDAT------LGKEGAYIALHAEEEFAASSEGVECPSCGWHGTTH 179

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                    +  D+L   
Sbjct: 180 AHAGETKPFRTEEESSVQEVFTPGAESIDALCSY 213


>gi|328467647|gb|EGF38702.1| histidyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 428

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 142/438 (32%), Gaps = 62/438 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSSNPLADVQTIMMG---HDLLGELGVKNYQLHINTLGDEQVRKGY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SKD  D     +     D +  NS    
Sbjct: 178 HDALVNYFTPVKDKLSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDNSKANF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +          +  + D            + E         E       G +Y      
Sbjct: 238 ESILKMLDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKA 356
             +  +G +       +GIG  R++  V+E         +GI            + NI  
Sbjct: 294 LVEEFNGPETPAV--GFGIGEERLML-VLEKQNPELFKNEGI---------DFFITNIG- 340

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +       +I   L K G +  +D   +++  QF  AD  G    + +G K +++  +
Sbjct: 341 --EGTAQKAIEIARSLRKQGFEADFDVNQKKLKGQFKKADREGAKYVITLGEKELANGVL 398

Query: 417 EIKHRLTGIREDMSLEEV 434
            IK    G   D+SLE++
Sbjct: 399 NIKRLADGKTIDLSLEDI 416


>gi|268323923|emb|CBH37511.1| histidyl-tRNA synthetase [uncultured archaeon]
          Length = 442

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 82/468 (17%), Positives = 157/468 (33%), Gaps = 57/468 (12%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M RS +F   L+E  ++  I             + ++G   ++P   +    +   +R+ 
Sbjct: 1   MLRSLFF---LRERLKEMRI-------------ERARGTRDFMPAEMQKRRIMETKMRDI 44

Query: 61  QNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            ++ G  E+  P+ + A+L+  +SG  +    E+    D+  + +   P     +T ++ 
Sbjct: 45  ADKWGYEEIRTPSFERAELFTLKSG--EEILNELYEFKDKGGRHLALRPELTAPVTRMYV 102

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           + +K     P   Y     FR E   +    R REF              S+     +  
Sbjct: 103 NELKM-APKPTKVYYFGNCFRYEEPQKA---RYREFWQFGTEIIGSDRPESQAEIIALAY 158

Query: 180 SYLRIF--------HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ---VFCSKDFM 228
                           +GL  I     +  +  +  ++ + L D GE +    F S+   
Sbjct: 159 FIANSLCVKAELHVGHVGL--IREVLRTANVVENSINQVMRLIDKGERESVIAFLSEIGT 216

Query: 229 DFPIPSENTDFDDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              +  +     D+    ++ E +     A+ S   NE                + +G  
Sbjct: 217 RTELIDDLIYLVDLSGKEALQEARDRNIIASDSAALNELEQLLELLEYYNVDYTLNLGIA 276

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS----------HDGKG 337
              G  Y   M        GK         G      +AA+               D   
Sbjct: 277 R--GLDYYTGMVFEMYEVGGKLGAQNQICGGGSY--RLAALFGGDDTPSTGFAFGFDRLA 332

Query: 338 IIWPDS---VAPFKISLINIKAH--DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            I+P     +   K+ ++ I+A   D         I   L       + D MG  I +Q 
Sbjct: 333 EIYPLETDDLKSIKVVVVPIRAKEADPKVMKEAITIATTLRAF-FHTYIDVMGRSISAQL 391

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           + A+ +     V+VG K V + KV +++  +G +E + +EE +     
Sbjct: 392 SYANSIPASFAVLVGKKEVEEGKVTLRNLESGEQEKLGVEECVERIKK 439


>gi|188588755|ref|YP_001919624.1| glycyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|251778464|ref|ZP_04821384.1| glycine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499036|gb|ACD52172.1| glycyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|243082779|gb|EES48669.1| glycine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 463

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 120/365 (32%), Gaps = 73/365 (20%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKAVQRSSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P G+   ++K +  Y   F    L ++ ++ E+  +     
Sbjct: 215 FTFRTREFEQMELE-FFCKP-GTDLEWHKYWKDYCWNF----LLNLNVKTENLRMRDHGE 268

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                    F   + +            +             H E  
Sbjct: 269 EELS------------------FYSNATSDIEYLFPFGWGELWGIADRTDYDLRKHQEHS 310

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVA 326
                                             +    + + +   +    +GA RV  
Sbjct: 311 GQ-----------------------------DLNYLDQTNNEKYIPYVIEPSLGADRVTL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        +   ++Y+ LSK   
Sbjct: 342 AFLIEAYDEEELDGGDSRTVLHLHPALAPFKAAILPLSKK---LSENALEVYSNLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D  V I++R T  +E + + E+  Y
Sbjct: 398 NIDFDETG-SIGKRYRRQDEIGTPYCITVDFDTLEDQCVTIRNRDTMEQERIKISELEAY 456

Query: 438 ASHRF 442
                
Sbjct: 457 IEKSL 461


>gi|315282432|ref|ZP_07870848.1| histidyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613921|gb|EFR87649.1| histidyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 425

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    ++        E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKKVCENYRYEEIRTPIFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDNPSIDVE---VISLAMEFFRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDHPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y     V  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKSYLDALGVPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVK 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGIG-FGIGVERILLAL-----EKADIEIPAK-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 AVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQSGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++   ++
Sbjct: 405 EQEAVSETTILEKLTN 420


>gi|291556422|emb|CBL33539.1| glycyl-tRNA synthetase [Eubacterium siraeum V10Sc8a]
          Length = 458

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 115/365 (31%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P T + +  +       + + +PF   Q+   FR+E+ P  
Sbjct: 150 MFKTFQGVTEDSKSELYLRPETAQGIFVNFMNIQRTTRKKVPFGVAQVGKSFRNEITPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F                                       G DL 
Sbjct: 210 FIFRVREFEQMELEFFC------------------------------------KPGTDLD 233

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             +         + +C K  +   I  EN    D          ++        +     
Sbjct: 234 WFYFW-------KDYCKKWLLSLGINEENLRLRDHDKEEL--CFYSKATTDFEYLFPFGW 284

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +      R      +  HI   G K        F     + +   +    +G  R+  A
Sbjct: 285 GELWGVADRTDYDLTQ--HIKTSGQK-----MEYFDPETNEKYVPYVIEPSLGVERLFLA 337

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           VI  ++D + +          +   +AP K +++ +        +   +I   LSK    
Sbjct: 338 VITEAYDEEQLEDGTTRNVMHFHPYLAPVKAAVLPLSKK---LANKAGEIADELSKY-FC 393

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD G  IG ++   D +G P  +      V D  V ++ R +  +E M + +V  Y 
Sbjct: 394 VDYDDAGA-IGKRYRRQDEIGTPFCITYDFDSVEDGCVTVRERDSMKQERMPIADVKKYI 452

Query: 439 SHRFS 443
             + +
Sbjct: 453 EDKIA 457


>gi|262305795|gb|ACY45490.1| glu- + pro-tRNA synthetase [Tomocerus sp. 'Tom2']
          Length = 134

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++ G   + G  +S      F+  + ++  +    S+G+ + R + A++    D +
Sbjct: 15  SGRGLQGGTSHHLGQNFSKMFEIVFEDPESREKKFAYQNSWGL-STRTIGAMVMVHSDDQ 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVCRDAC-----EKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++   I A       A      ++   RLSK G  V  D       
Sbjct: 74  GLVLPPRVAALQVVIVPCGITASTSEADKAALLKEVQEYENRLSKAGVRVKGDVRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|317496045|ref|ZP_07954405.1| histidyl-tRNA synthetase [Gemella moribillum M424]
 gi|316913620|gb|EFV35106.1| histidyl-tRNA synthetase [Gemella moribillum M424]
          Length = 426

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/445 (14%), Positives = 139/445 (31%), Gaps = 48/445 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP   +    +   +R+  +     E+  P  +S +L+        D 
Sbjct: 1   MVISMPRGTQDILPEESRKWQYIEEKLRKISSDFCYEEIRTPMFESTELFSRGVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRF 147
             KEM    D++D+++   P         +  +    + + P   Y +   FR E + + 
Sbjct: 61  VQKEMYTFMDKSDRSLTLRPEGTAGTVRSYIENKLFAQTIQPQKLYYVGPMFRYERKQK- 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGD 205
              R R+F+                    +      I+   G+++I +   S   P    
Sbjct: 120 --GRYRQFVQYGVEVIGDESPKIDAE---VISLAYNIYKIFGIENIKVSINSLGNPEERR 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +E ++         F           +     D  +  N  + +            ++
Sbjct: 175 AYNEALIKHFEPRIHEFDEDCNNRL-YKNPMRILDCKVDANHELVKTAPRLLEYLGEESK 233

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGA------------------ 305
             F  +  +        E+ H    G  Y                               
Sbjct: 234 AYFAEVLRHLDALGVKYEIDHNLVRGLDYYTHTAFEIMIDNPEVELKTLCGGGRYNGLVK 293

Query: 306 --DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKISLINIKAHDQVC 361
             DG +    +G + +   R++ A+   +     I  P  D++  F +S+       +  
Sbjct: 294 LLDGPEDKKGIG-FALSIERLLLALESEN-----ITLPIDDTIDLFVVSM------GEKA 341

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            DA  K+   L   G     D   +++ +Q  +AD     L +I+G   + + +  +K  
Sbjct: 342 GDAAVKLTNDLRLAGYKAQNDYFDKKMKAQMKIADRYKAKLSIIIGESELENDEYVVKDM 401

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  E +I Y   +    +
Sbjct: 402 ESFNQETVKRENIIKYLEEKLRGEK 426


>gi|312173201|emb|CBX81456.1| Histidyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 450

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 149/435 (34%), Gaps = 41/435 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V  ++++  +  G  E+ VP ++   L++ + G   D   K
Sbjct: 31  QAIRGMNDYLPAETAVWQRVEQVLKQVLSSYGFSEIRVPIVEQTPLFLRAIGEVTDVVEK 90

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 91  EMYTFDDRNGESLSLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 146

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGG 204
           SR+F    A  F L           M     R +  LG+    +         ++     
Sbjct: 147 SRQFHQIGAEVFGLQGPDIDAELIMM---TARWWKALGIADHVVLELNSIGSLQARANYR 203

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D    F+        +    + + +    + S+N D   +++    +  +    +     
Sbjct: 204 DALVAFLEQHVEMLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPTLGDYLDDESREHFA 263

Query: 263 HNEKLFDSLP---ENKRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDH 310
              +  D+        +   RG++     +F       G + ++     + G       H
Sbjct: 264 GLCRHLDAAGIAYRVNQRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGGH 323

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                 + +G  R+V  V   +             P ++  + + A  Q  + A   +  
Sbjct: 324 ATPAVGFAMGLERLVLLVQAVN---------PEFEPTRVVDVYVIAAGQGVQSAALLLAE 374

Query: 371 RLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +L     ++    +  G     QFA AD  G  + +++G   V++ ++ IK   TG ++ 
Sbjct: 375 QLRDALPELKLMSNLGGGSFKKQFARADKWGARIALVIGEDEVANGQLVIKDLRTGEQQT 434

Query: 429 MSLEEVINYASHRFS 443
           ++  +     +    
Sbjct: 435 LAQGDAATVLAALLQ 449


>gi|83319858|ref|YP_424781.1| seryl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|123535469|sp|Q2SR32|SYS_MYCCT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|83283744|gb|ABC01676.1| seryl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 422

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 105/312 (33%), Gaps = 70/312 (22%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K + ++  ++ +   + G  E+  P + +    + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRSIADLLLKRHEKHGYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVG--- 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 225 --EQYLIPTSEVPLTNLHANEILAYDVLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +     + PE S +    +      + +   L    +   SG IG          A T
Sbjct: 283 KVELVKI-VHPEESMNELEMLIKDAEDVLNMFDLPYRVVELCSGDIGFSS-------AKT 334

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            + +V+  +      I S +                                        
Sbjct: 335 YDLEVWFPEQNKYREISSCSNC-------------------------------------- 356

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDG 335
                      F      +  M   FK  D K   V  +   G+   R++AA++E+  DG
Sbjct: 357 ---------TDFQ-----ARNMQTRFKDKDSKIKLVHTLNGSGVAVDRLIAAILENYWDG 402

Query: 336 KGIIWPDSVAPF 347
           + +I P  + P+
Sbjct: 403 EKLILPTLLRPY 414


>gi|332687374|ref|YP_004457147.1| seryl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332687375|ref|YP_004457148.1| seryl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332371383|dbj|BAK22338.1| seryl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332371384|dbj|BAK22339.1| seryl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 423

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 13/198 (6%)

Query: 42  WLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
           +  LG +    +   + +   N  G  EM  P + ++     +G++  + +++ ++AD +
Sbjct: 166 YKNLGARLERAIYNFMLDTHINEHGFQEMITPYMVNSKSMFGTGQFPKFKEDVFQVADTD 225

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T+ + + I S   LP  F  +   FR E     +   G++R  +F 
Sbjct: 226 ---YTLIPTAEVPLTNYYANEILSEDELPIYFTAMSPCFRSEAGSAGKDTRGLIRLHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  T E S      +  +   I  +L L    +   +G +G   +     E  +
Sbjct: 283 KVEMVKF-TTEETSYDELESLTRAGEEILEKLELPYRTIVLCTGDMGFSAAKTYDIEVWM 341

Query: 213 LADTGETQVFCSKDFMDF 230
            A     ++    + +DF
Sbjct: 342 PAQNTYREISSCSNCVDF 359


>gi|329926776|ref|ZP_08281184.1| histidine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938976|gb|EGG35344.1| histidine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 417

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 123/429 (28%), Gaps = 45/429 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +   G    LP   +    +    R+   R    E+  P  +  +L+        D   
Sbjct: 6   FEKPTGTQDILPGAVEKWQFIEEKARDLCRRYNYREIRTPIFEQTELFERGVGETTDIVE 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM    D+ D++M   P     +   +  +           Y +   FR E RP+ G  
Sbjct: 66  KEMYTFKDKGDRSMTLRPEGTAGVVRAYVQNKLYGEPDVTKLYYMGPMFRYE-RPQAG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----------- 199
           R R+F       F             +       +  LGL  +     S           
Sbjct: 123 RYRQFHQFGVEVFGTADPAIDAE---VIALGYSFYKELGLNGVKAEINSVGTPEVRAAYR 179

Query: 200 -------GPIGGDLSHEFIVLADTGETQVFCSKDFM-----DFPIPSENTDFDDIISLNS 247
                   P+   L  +     +    +V   K           I     +         
Sbjct: 180 SALLAFLEPMKDSLCSDCQSRMERNPLRVLDCKKDQGKFGDAPSILDSLDEECSTHFEKV 239

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                        +    +  D    +     +   +G I   G       +       G
Sbjct: 240 KGHLDAMGIEYEINPRLVRGLDYY-THTAFEFKAQGIGAIDTVGG--GGRFNGLVGQIGG 296

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            D        G+     +  ++E  H G  +    +  P  + L+ +    +  R+  + 
Sbjct: 297 PDQPGIGFGIGL---ERIQLILE--HQGVNL---SASKPLDVYLVALGEAAE--RELAKL 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IY  L   G     D +G ++ +Q   AD L      I+G   ++  ++ +K   TG + 
Sbjct: 347 IYD-LRSKGVSAERDYLGRKMKAQMKSADRLQARYTAILGDDELARGEIALKSMETGEQR 405

Query: 428 DMSLEEVIN 436
            + L+ ++ 
Sbjct: 406 TVRLDSLVQ 414


>gi|296133427|ref|YP_003640674.1| histidyl-tRNA synthetase [Thermincola sp. JR]
 gi|296032005|gb|ADG82773.1| histidyl-tRNA synthetase [Thermincola potens JR]
          Length = 419

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 132/438 (30%), Gaps = 49/438 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    KG    LP   +    +  II+E     G  E+  P  +  +L++       D 
Sbjct: 1   MLTTGPKGTNDILPGQVEKWHFLEKIIKEICREYGYAEIRTPIFEHTELFLRGVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F  H    + LP   Y     FR        
Sbjct: 61  VEKEMYTFQDKGKRSLTLRPEMTASAVRAFVEHKLYAQPLPIKVYYEGPMFRY---ANVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F       F             M    +  ++RLGL+ + +   S       P 
Sbjct: 118 AGRYRQFHQFGVEVFGSDDPVVDAEVISM---AMDFYNRLGLRDLELHINSVGCPVCRPK 174

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             +   +F+     G+    C+     +             +   + E      +   D 
Sbjct: 175 HREELRKFLA----GKLDRLCALCRSRYDRNPMRILDCKEEACRLVSEGAPTTLSCLCDD 230

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKGADGKDH---------- 310
             E           + A GIE         G  Y    +     AD              
Sbjct: 231 CREHFEKVKNY---LDAIGIEYIIDDRLVRGLDYYTKTAFEIMAADIGAQSSIGGGGRYN 287

Query: 311 --------YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                       G      +  + A +E      GI  P       I L  +    +  +
Sbjct: 288 GLIEQVGGPPTPGIGFALGLERILATMERQ----GIEIPVENR-CDIYLAPLG---EEAK 339

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   L + G     D++   + +Q   A+ L     VI+G   ++     +++  
Sbjct: 340 LKSFRILDILRRSGLAAEIDNLNRSLKAQMKFANRLKAKYVVILGENELNRGIAAVRNMA 399

Query: 423 TGIREDMSLEEVINYASH 440
            G +E+++L+E+INY   
Sbjct: 400 DGQQEEIALDELINYLKK 417


>gi|237650856|ref|ZP_04525108.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822706|ref|ZP_04598551.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
          Length = 425

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 143/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M  +Y      +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETISM-AAY--FLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|160946147|ref|ZP_02093358.1| hypothetical protein PEPMIC_00109 [Parvimonas micra ATCC 33270]
 gi|158447670|gb|EDP24665.1| hypothetical protein PEPMIC_00109 [Parvimonas micra ATCC 33270]
          Length = 433

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 147/448 (32%), Gaps = 53/448 (11%)

Query: 29  TGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
            G I   +  G    LP  Q   DNV  II +   + G + +  P  +  ++ +  G  +
Sbjct: 1   MGFIKPSNVVGTMELLPNEQILFDNVKNIIEDTFKKRGFLPIDTPVFEKNEILLAKGGGE 60

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +  K++ ++ D   K +        V    + +   S  N PF  Y I   +R E R + 
Sbjct: 61  T-TKQIFKI-DSESKDISLR-FDLTVPLARYVAQYFSDLNFPFRRYHIGKVYRGE-RNQK 116

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNK---MFVSYLRI------------------FH 186
           G  R +EF   D           K+       ++  + +I                  F 
Sbjct: 117 G--RYKEFYQCDIDVIGNGKLDIKNDAELPYIIYEIFSKIINEKFAINFSNLKIINGLFE 174

Query: 187 RLGLKS----IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            LG+ +    + +  +   IG +   E   L +TG       K      I   N +  + 
Sbjct: 175 NLGVDNKTDMLRIIDKIEKIGFEKVVE--ELKNTGLNDNNLEKITEFIKISGSNEEIIEK 232

Query: 243 ISLNSIVEQ-WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           ++   I    +        +V+N      +PE+       I  G  +Y GT Y   +   
Sbjct: 233 LNSLGIKNALFDKGVEELKEVYNCMKLFGIPEDCIKINLTITRGLDYYTGTVYETFLENY 292

Query: 302 FK---------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP--FKIS 350
            +           D   +Y      G+G    +  +     D         +        
Sbjct: 293 RQLGSVCSGGRYDDLASNYTSQILPGVGISIGLTRLFYQLLDKNLF---KEIKTNSIDAL 349

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +I +    + C D   K+  +    G  +       ++  + + AD L  P  +IVG   
Sbjct: 350 IIPM----ENCYDYAIKLLNKFENSGKIIQIYFEDAKMKKKISYADKLNIPYIIIVGEDE 405

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +++   +K   TG +  +  E +I   
Sbjct: 406 KANNTYTVKDLKTGEQSTVDFEGLIKLI 433


>gi|149002958|ref|ZP_01827869.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|149006905|ref|ZP_01830586.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225855611|ref|YP_002737123.1| histidyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|254782350|sp|C1CH52|SYH_STRZJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|147758961|gb|EDK65956.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147761506|gb|EDK68471.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225722383|gb|ACO18236.1| histidyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 429

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 143/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M  +Y      +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETISM-AAY--FLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|145532881|ref|XP_001452193.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419876|emb|CAK84796.1| unnamed protein product [Paramecium tetraurelia]
          Length = 428

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           SK  L    +  ++  +  H+ + +     + HQ S G   + P G    + +   +R +
Sbjct: 311 SKKLLDEYVKIQKELALRDHRNVGKKQNLYLFHQLSPGSAFFYPSGAHIYNTLMNFLRRQ 370

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
               G  E+  P + +A LW  SG YD Y + +    +  ++  I+  THE
Sbjct: 371 YYIRGYQEVISPNIFNAQLWKISGHYDKYKENLF-FINMGEEGRIWIKTHE 420


>gi|147921754|ref|YP_684424.1| histidyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|110619820|emb|CAJ35098.1| histidyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 433

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 150/449 (33%), Gaps = 62/449 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           M  Q  KG   + P    A   V   I     R G  E+  P+++S DL+  +SG  +  
Sbjct: 4   MKFQSLKGFRDFYPEEMAARREVLDKIFNVVRRYGFREVDSPSVESMDLFRIKSG--EEI 61

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            ++     D+ ++ +   P     +  +     K+ R  P  ++ +   +R E  P+ G 
Sbjct: 62  VQQTFSFKDKGEREITLIPELTPTIARMVVDREKTLRR-PIKWFSMPKMWRYEE-PQSG- 118

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKM-FVSYLR-------IFHR------------LG 189
            R REF   +   + +    +      +     L+       +F              LG
Sbjct: 119 -RLREFYQLNVDIYGVKGPEADAEVLAVGIDLMLKLGLEGEFVFKISDRRFMQGALEGLG 177

Query: 190 LKSI-PMRAESGPIGGDLSHEFIVLADTG---------ETQVFCSKDFMDFPIPSENTDF 239
           +  + P+ A     G     EF  L  T             +  +K  +   +P      
Sbjct: 178 VTEVGPVFAAIDKRGKISPEEFKQLLATAGLNDFQMGKLIAILDTKGPITEALPKVKALL 237

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               ++   +          +  +  +  +  P         I  G  +Y GT +     
Sbjct: 238 ARNDTVVEGMTNLEKLAELMTMYNMAQYCEFDP--------AIIRGLAYYTGTVFE---C 286

Query: 300 ATFKGA-----DGKDHYVQMGSYGIGAMRVVA-----AVIESSHDGKGIIWPDSVAPFKI 349
              KG       G  +   +G +G   M  V      AV+E      G +WP        
Sbjct: 287 FDVKGELRAVFGGGRYDKIVGLFGGEDMPAVGFGMGDAVLEILMRRAG-VWPQESITTDY 345

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++  K      ++    +   L +    V  D  G   G+Q   A+ +G    +I+G K
Sbjct: 346 YILTTKPQ---FKETETFLAQALRENNFVVEVDLQGRNFGNQMKYANAIGARHVLILGDK 402

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +++ KV +K+  TG +    + E ++  
Sbjct: 403 EMAEGKVTVKNMETGEQVMKEIREFLSSV 431


>gi|154151276|ref|YP_001404894.1| histidyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|166228579|sp|A7I940|SYH_METB6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|153999828|gb|ABS56251.1| histidyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 410

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 131/442 (29%), Gaps = 66/442 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  +G   +LP   +A  ++ A +RE   R G  E+  P  +  +L+   SG  +  
Sbjct: 1   MIQK-PRGTRDFLPDEMEARRSIEAKMREAVRRFGYREVCTPEFEELELFTLRSG--EGI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +EM    D+  + +   P     +  ++ +  K     P  +      FR E RP+ G 
Sbjct: 58  MQEMYVFEDKGGRKLALRPEITAAVIRMYINEAKV-APKPLRWCYFADCFRYE-RPQKG- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-------------IFHRLGLKSIPMR 196
            R R+F    A         +      +    L               F +  L  +   
Sbjct: 115 -RYRQFWQFGAELIGADTALADAEVIMLAAEALNATGVTWELKVGHLAFMKNLLADLDPA 173

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A+   +      +F  LA+T               +    T   +  +L    E      
Sbjct: 174 AQRRVMAHLDKKDFEGLAET-------LAGMRKSGLNDSLTALVECRTLAEAFEIAGTIP 226

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-----GKDHY 311
                     + D+    +     GI  G  +Y G  +    +      +     G    
Sbjct: 227 EKERVEQTMGILDASG-VRYSLNFGIARGLDYYTGMVF-EGFAENLGAENQILGGGAYRL 284

Query: 312 VQM------GSYGIGA--MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +       S G      RV+ ++ E       I            ++           
Sbjct: 285 AHLFGGDDVASCGFAIGFDRVMVSLGEVFAAKDTI----------AGIVCTDEGRSFALS 334

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAV----ADLLGFPLQVIVGSKFVSDSKVEIK 419
              +        G     D MG  +G+Q A     AD       V++G +     +V +K
Sbjct: 335 VARE----FRAAGIRAEMDLMGRGLGAQLAHASKTAD-----FAVVIGKREADAGQVTLK 385

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           +  +G ++ +     I      
Sbjct: 386 NLHSGEQKTLDPAAAIAEVKAH 407


>gi|259048107|ref|ZP_05738508.1| serine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259035168|gb|EEW36423.1| serine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 430

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +    + G  EM  P + +      +G++  + +++ +L D  ++ 
Sbjct: 174 LGARLERAIYNYMLDLHVEKHGYTEMITPYMVNEQSMYGTGQFPKFKEDVFQLTD--ERN 231

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I     LP  F  +   FR E     R   G++R  +F   +
Sbjct: 232 LTLIPTAEVPLTNYYANEILDEAQLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVE 291

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F   PE S     KM  +   +   LGL    +   +G +G   +     E  + A 
Sbjct: 292 MVKF-AKPEDSFDELEKMTDNAEDVLRGLGLPFRTIVLCTGDMGFSAAKTYDVEVWIPAQ 350

Query: 216 TGETQVFCSKDFMDF 230
               ++    + +DF
Sbjct: 351 DTYREISSCSNCVDF 365


>gi|257792717|ref|YP_003183323.1| seryl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|317489004|ref|ZP_07947531.1| seryl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325831041|ref|ZP_08164365.1| serine--tRNA ligase [Eggerthella sp. HGA1]
 gi|257476614|gb|ACV56934.1| seryl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|316911871|gb|EFV33453.1| seryl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325486962|gb|EGC89408.1| serine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 429

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 13/205 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P + +A+    +G+   + +++        + +
Sbjct: 173 LGARLERALINFMADTHASRGYKEWWCPAMANAETLTGTGQLPKFEEDLFHTT----EGL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +     LP  +      FR+E     R   G++R  +F   + 
Sbjct: 229 YLIPTAEVQLTNIHAGEVLDAGQLPLKYCAFTPCFREEAGSAGRDTRGLIRVHQFDKVEM 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             +   PE S      M      I   LGL    +   +G IG   +     E  + +  
Sbjct: 289 VKY-AKPEESFDDLEAMVADAENILQLLGLPYRVISLCTGDIGFSAAKTYDLEVWLPSYN 347

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
           G  ++    +  DF     N  + D
Sbjct: 348 GYKEISSCSNCTDFQARRANIKYRD 372


>gi|297527300|ref|YP_003669324.1| glycyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256216|gb|ADI32425.1| glycyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 588

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 79/557 (14%), Positives = 161/557 (28%), Gaps = 152/557 (27%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI--EMSVPTLQSADLWVESGRYDSY----- 89
            G Y + P G     N+      +      +  E+  P +    +   SG  D +     
Sbjct: 33  AGFYDFGPSGVLIKRNIINEWLNQLVYNTGLVLEIETPIITPRIVLKASGHEDHFTDPIT 92

Query: 90  ---------------------------GKEMLRLADRNDKAMIYGP---THEEVMTDIFR 119
                                        E+ +L   ++          T  +    +F+
Sbjct: 93  ECTRCGRVFRADHLIEEALGIRAEGLSMDELWKLIKEHNIRCPECGGELTKPKPALLLFK 152

Query: 120 SHIKSYR---------------------------NLPFTFYQIQLKFRDELRPRFGVMRS 152
           + I  Y+                            LP    QI    R+E+ PR G++R 
Sbjct: 153 TEIGPYKGSPAYLRPETAQGMFASFKHVLNIARNKLPLGIAQIGRVGRNEISPRQGLLRL 212

Query: 153 R-------EFLMK-----DAYSFDLTPEGSKHSYNKM----------------------- 177
           R       EF        +     +T E    + N +                       
Sbjct: 213 REFTIMELEFFFDPEKALEETMTYMTDEIRNENINIITAEDKLKGEEKTRKYTAIELIEN 272

Query: 178 ----------FVSYLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                     +++   IF  +LG+    +R +       L  E    ++    Q   ++ 
Sbjct: 273 KIVKNPWMAYWMALGNIFLRKLGIPPEKIRFDE-----KLPEEKAHYSEQTFDQEVYTEK 327

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEV 284
           +    +   +      +S +    +    Y        +K    +  N +      G ++
Sbjct: 328 YGWVEVAGYSYRTTYDLSRHIEYSKADLTYFKKYSKPVKKKIIKVVPNPKKIREIVGEDI 387

Query: 285 GHIFY-FGT-------------------KYSLPMSATFKGAD-----GKDHYVQMGSYGI 319
           G I                          Y L               G+     +     
Sbjct: 388 GVIMKKLSEIPAEKILENLNKNNYVEINNYKLGRECFIISEKEETIHGEKIIPHVVEPSF 447

Query: 320 GAMRVVAAVIESS----HDGK-GIIWPDSVAPFKISLINI----KAHDQVCRDACEKIYA 370
           G  R+   V+E+S     DG+  +  P  +AP+K+++  +    K   +       +IY 
Sbjct: 448 GLERIFYVVLENSINIARDGRIVLKLPPRIAPYKVAVFPLVTGNKPKHKKMVSIARQIYR 507

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +     ++D+ G  IG ++A AD +G P  + V  + + D  V ++ R +  +  + 
Sbjct: 508 ALLENNILAYYDEEG-SIGRRYARADEIGIPYAITVDYQTLEDKTVTLRDRDSREQIRLH 566

Query: 431 LEEVINYASHRFSNNRP 447
           ++E+ +         + 
Sbjct: 567 IQEIYDKLLSLLGEKKE 583


>gi|226330399|ref|ZP_03805917.1| hypothetical protein PROPEN_04317 [Proteus penneri ATCC 35198]
 gi|225201194|gb|EEG83548.1| hypothetical protein PROPEN_04317 [Proteus penneri ATCC 35198]
          Length = 87

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTP 167
            +      IF+  ++SYR+LP    +     R+E      G+MR R F   DA+ F  T 
Sbjct: 1   MNCPGHVQIFKQGLRSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIF-CTE 59

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           E      N        ++   G +    
Sbjct: 60  EQILSEVNDCIKLIYDVYSTFGFEKNCC 87


>gi|329725453|gb|EGG61936.1| putative glycine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 310

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 124/366 (33%), Gaps = 72/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 1   MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 60

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +      + +Y + F    L  + +           S
Sbjct: 61  FIFRTREFEQMELEFFCKPGEEIE------WQNYWKTFASEWLTDLNI-----------S 103

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + + L D  E ++            +              +    +        H+E  
Sbjct: 104 EDNMRLRDHDEDELSHYS-------NATTDIEYKFPFGWGELWGIASRTDYDLRQHSEHS 156

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +                       KY  P          + +        +GA RV  A
Sbjct: 157 GEDF---------------------KYHDP-------ETNEKYIPYCIEPSLGADRVTLA 188

Query: 328 VIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +  ++  +G          + +  ++AP+K +++ +            KI+ +LS    
Sbjct: 189 FLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSSEAIKIFEQLSSS-F 244

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+  +
Sbjct: 245 AIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELETF 303

Query: 438 ASHRFS 443
            + +  
Sbjct: 304 LAEKVK 309


>gi|303232994|ref|ZP_07319674.1| serine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302480921|gb|EFL44001.1| serine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 429

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 75/222 (33%), Gaps = 13/222 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    +     +   + G  E   P L + D    +G+   + +++  ++D
Sbjct: 165 FYVLGGYGAQMERALINFFIDMHAKAGFKEWWPPVLTNYDSLFGTGQLPKFDEDLFHVSD 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E ++T++ R  +     LP  +      FR+E     R   G++R  E
Sbjct: 225 N----LYLIPTAEVMLTNLHRDEVLDAAQLPLLYTAFTPCFREEAGSAGRDTRGIIRVHE 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F  TPE S +    M          LGL    +   +G IG         E 
Sbjct: 281 FDKVEMVKF-ATPENSMNELELMVGEAEACLQTLGLPYRVVSLCTGDIGFSACKCYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            + +     ++    +  DF     N  + D  S        
Sbjct: 340 WLPSYNNYKEISSCSNCWDFQARRANIRYRDAASFKGTRYVH 381


>gi|161344096|ref|YP_399468.2| seryl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|161621818|ref|YP_171779.2| seryl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|146345525|sp|Q8GMR7|SYS_SYNE7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 428

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 12/211 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G      + A + + Q   G  E++ P L ++     SG+   + +E  R  D
Sbjct: 167 FVTLLGAGAALERALIAFMLDRQTAAGYTEVAPPYLINSASLTASGQLPKFSEESFR-CD 225

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           R+D  +   PT E  +T ++R  I S   LP  +      FR E     R   G++R  +
Sbjct: 226 RDD--LWLTPTAEVPLTSLYRDEILSADQLPLRYCAYTPCFRREAGSYGRDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F + P+ S+ ++ ++  +   I   L L    +   +G +G         E 
Sbjct: 284 FNKVELYQF-VHPDHSEAAHQQLLANAEAILQALELPYRTIELCTGDLGFSAQKTYDIEV 342

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +     ++    +  DF     N  F +
Sbjct: 343 WLPSAGRYREISSCSNCGDFQARRANIRFKE 373


>gi|313157062|gb|EFR56492.1| glycine--tRNA ligase [Alistipes sp. HGB5]
          Length = 514

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 110/370 (29%), Gaps = 75/370 (20%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M              +   P T + +  +           LPF   QI   FR+E+  R 
Sbjct: 197 MFSTQMGSTAEGANTIYLRPETAQGIFVNFLNVQKTGRMKLPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF                                                    
Sbjct: 257 FIFRMREFEQM------------------------------------------------- 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E       GE      +             +   +       ++          +    
Sbjct: 268 -EMQFFVRPGE------EMKWWQAWKETRMAWHRALGFGDDRYRFHDHEKLAHYANAATD 320

Query: 268 FDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +           GI     F  G   K+S      F    G+ +   +    IG  R+ 
Sbjct: 321 IEYNFPFGFKEVEGIHSRTDFDLGNHQKFSGRKIQYFDPETGESYVPYVVETSIGVDRMF 380

Query: 326 AAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             V+ +++  + +           P ++AP K++++ +   D    +  +KI   L K  
Sbjct: 381 LQVMSAAYTEEQLEGGDSRVVLRLPAALAPVKVAVLPLVKKD-GMPEVAQKIVDLL-KYD 438

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +D+  + +G ++   D +G P  V V  + + D+ V ++HR T  +E ++++++  
Sbjct: 439 YNVVYDE-KDSVGKRYRRQDAVGTPFCVTVDGQTLEDNTVTVRHRDTMQQERVAIDKLPA 497

Query: 437 YASHRFSNNR 446
                 S  +
Sbjct: 498 LVEEECSYRK 507


>gi|307128383|ref|YP_003880414.1| histidyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|306485445|gb|ADM92314.1| histidyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
          Length = 429

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFATKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|302389387|ref|YP_003825208.1| glycyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200015|gb|ADL07585.1| glycyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 460

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 85/501 (16%), Positives = 151/501 (30%), Gaps = 140/501 (27%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G + Q S+   G+   + + PLG +   N+  I  ++    R   + +    L  
Sbjct: 15  LCKRRGFVFQGSEIYGGLANTWDYGPLGVELKQNIKRIWWKKVVYERDDVVGLDSAILMH 74

Query: 77  ADLWVESGRYDSYGKEM---------LR--------------------LADRNDKAMIYG 107
             +W  SG    +   +          R                    L +      I  
Sbjct: 75  PRVWEASGHVAGFNDALVDCKQCKSRFRADHLIEDTLGIHAEGKSVQELTEIIHNNQIKC 134

Query: 108 PTHEE-------VMTDIFRSHI-----------------------------KSYRNLPFT 131
           P   E       V   +F++H                               S   LPF 
Sbjct: 135 PVCGEVAWTDARVFNLMFKTHQGVVEDSSSVVYLRPETAQGIFVNFKNVLDTSRVKLPFG 194

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGL 190
             QI   FR+E+ P   + R+REF   +   F    E  +   Y + F      F  LG+
Sbjct: 195 IAQIGKAFRNEITPGNFIFRTREFEQMELEFFVKPGEDMEWFEYWRQFTM--DFFLSLGV 252

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           K   +R                                    P E + +    +      
Sbjct: 253 KKENLRLRD-------------------------------HSPEELSHYSKATTDLEYNF 281

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +            +                    HI Y G       S T+   + K H
Sbjct: 282 PFGWGELWGVANRTDYDLSK---------------HIEYSGK------SLTYFDQEEKRH 320

Query: 311 Y-VQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVC 361
               +    +G  R + A++  ++  +         + +   VAP K ++  +    +  
Sbjct: 321 IVPYVIEPSLGVDRAMLAILCDAYREEEVEGETRVVLGFHPDVAPIKCAVFPLFKK-EPL 379

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   KIY  L K    V +D+ G  IG ++   D +G P  + V    + D KV I++R
Sbjct: 380 EELARKIYHDLKKCYV-VEYDNTG-SIGKRYRRQDEIGTPYAITVDFDSLDDHKVTIRNR 437

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  ++ + ++ + +Y   + 
Sbjct: 438 DTMQQDRIGIDNIKDYLRDKL 458


>gi|237732493|ref|ZP_04562974.1| histidyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226908032|gb|EEH93950.1| histidyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 424

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 132/439 (30%), Gaps = 51/439 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGVEVFGLQGPDIDAE---LIMLTARWWRALGISQ-HVSLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     ++   K   D            + S N  +        A    + ++     
Sbjct: 178 RDALVAYLELHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDDDSREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM-- 322
               K + + GI          G  Y          +  G+ G       G Y       
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTSSLGSQGT--VCAGGRYDGLVEQL 295

Query: 323 --RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVG 376
             R   AV  +    + ++   +V P      +  I + A     + A   +  RL    
Sbjct: 296 GGRATPAVGFAMGLERLVLLVQAVNPEFNADPVVDIYLVASGADTQSAAMTLAERL---- 351

Query: 377 CDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                    E  G +             FA AD  G  + +++G   V+D  V +K   +
Sbjct: 352 -------RDEVPGVKLMTNHGGGNFKKQFARADKWGARVALVLGESEVADGTVVVKDLRS 404

Query: 424 GIREDMSLEEVINYASHRF 442
           G +  ++ + V  +     
Sbjct: 405 GEQTAVAQDSVAAHLRTLL 423


>gi|126440200|ref|YP_001059224.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|166227952|sp|A3NA53|SYH_BURP6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|126219693|gb|ABN83199.1| histidine--tRNA ligase [Burkholderia pseudomallei 668]
          Length = 446

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 136/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYLGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +              +    + L D    
Sbjct: 182 AHRVELIKYLEQHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRA 241

Query: 274 NKRVSARGIEVGH-IFYFGTK-------YSLPMSATFKGADGKD---------------- 309
           +     R ++  +  F    +       Y+L +        G                  
Sbjct: 242 HFDGLQRLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E             + P +  + +  +   D   R+  
Sbjct: 302 GGKPTAACGWAMGVERILELLKEEH-----------LVPEQEGVDVYVVHQGD-AAREQA 349

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
             +  RL   G DV      +  G+ F      AD  G    VI+G   V++  V +K  
Sbjct: 350 FIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVILGEDEVANGTVSVKPL 409

Query: 421 RLTG------IREDMSLEEVINYASH 440
           R TG      +++ + +E +  +  +
Sbjct: 410 RGTGAEGEKNVQQSVPVESLTEFLIN 435


>gi|269926946|ref|YP_003323569.1| glycyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790606|gb|ACZ42747.1| glycyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 457

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 126/357 (35%), Gaps = 56/357 (15%)

Query: 93  MLRL---ADRNDKAMIY--GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       N+ A+ Y    T + +        + S + LPF   QI   +R+E+ P  
Sbjct: 148 MFKTFVGPVENEAAVAYLRPETAQAIFVQFSNVLMTSRKKLPFGIAQIGRAYRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + RSREF   +   F + P      Y+      +  F  LG+    +R        DLS
Sbjct: 208 FIFRSREFEQMELEYF-VRPGEDDKWYDYWRNFAIDWFVSLGVSRERLRL-KEHAKEDLS 265

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H       T + +      + +    +  TD+ D+ +  ++  Q    Y   +  H    
Sbjct: 266 HYSKA---TTDLEYLYPFGWNELWGIANRTDY-DLKAHMAVSGQQLTYYDEETKSHIVPY 321

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                         + V   F         + A  +  D +   V               
Sbjct: 322 V---------IEPSLGVDRSFL-----VFLLDAYHEEPDNEGTRVV-------------- 353

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     + +   +AP K++++ +   + + +    +I  RL+    DV+  D  E 
Sbjct: 354 ----------LRFHPRIAPVKVAVLPLSRKEPLIK-IAWEIRDRLA----DVYVTDYDET 398

Query: 388 --IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             IG ++   D +G P  V V  + + D+ V I+ R T  ++ +S+ E+ +    + 
Sbjct: 399 GSIGRRYRRQDEIGTPYCVTVDFQTLEDNAVTIRDRDTMQQDRVSISELESVLKDKL 455


>gi|187777500|ref|ZP_02993973.1| hypothetical protein CLOSPO_01075 [Clostridium sporogenes ATCC
           15579]
 gi|187774428|gb|EDU38230.1| hypothetical protein CLOSPO_01075 [Clostridium sporogenes ATCC
           15579]
          Length = 463

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 120/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N            LG+    +R        D S
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFNYWKDYCWNFLINLGINKESIRF------RDHS 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                         E + + +  S    +  +            +  
Sbjct: 268 QE-------------------------ELSHYSNATSDIEFLFPFGWGELWGVADRTDFD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E+                           +     K+ Y        +GA RVV 
Sbjct: 303 LKKHMEHSGE---------------------DLNYLDPTTKERYVPYCIEPSLGADRVVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        D  +++Y+ LSK   
Sbjct: 342 AFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LSDESQEVYSMLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R T  +  +++ E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRDTMDQIRVNINELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEDKLQ 462


>gi|160931282|ref|ZP_02078683.1| hypothetical protein CLOLEP_00119 [Clostridium leptum DSM 753]
 gi|156869760|gb|EDO63132.1| hypothetical protein CLOLEP_00119 [Clostridium leptum DSM 753]
          Length = 450

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 129/370 (34%), Gaps = 81/370 (21%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D  ++  +   T + +  +       + R LPF   QI   FR+E+ P  
Sbjct: 142 MFKTFQGVTEDAKNEIFLRPETAQGIFVNFANIQRTTRRKLPFGVCQIGKSFRNEITPGN 201

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F       +  Y      Y + + +     LG+K   MR      
Sbjct: 202 FTFRTREFEQMELEFFCKPDTDLEWFY------YWKDYCKNWLLSLGIKEENMRLRD--- 252

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                HE        E   F SK   D                  I   +   +     +
Sbjct: 253 -----HE-------KEELSFYSKATTD------------------IEYLFPFGWGELWGI 282

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +   +D L +++  S + +E                  F  +D   +   +    +GA 
Sbjct: 283 ADRTNYD-LKQHQDHSGKSLE-----------------YFDPSDNTRYIPYVVEPSLGAD 324

Query: 323 RVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           RV  A +  ++D +          +    ++AP+K +++ +        +  EK+Y  L 
Sbjct: 325 RVALAFLCEAYDEEEVGEKDTRVVMHLHPALAPYKCAVLPLSKK---LNENAEKVYHMLQ 381

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K    V +DD G  IG ++   D +G P  +       +D  V ++ R T  +E +++++
Sbjct: 382 K-RFMVEYDDAG-SIGKRYRRQDEIGTPFCLTYDFDSETDGCVTVRDRDTMAQERVAIDK 439

Query: 434 VINYASHRFS 443
           +  Y   +  
Sbjct: 440 LAEYIEAKLE 449


>gi|289705793|ref|ZP_06502176.1| glycine--tRNA ligase [Micrococcus luteus SK58]
 gi|289557509|gb|EFD50817.1| glycine--tRNA ligase [Micrococcus luteus SK58]
          Length = 460

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/496 (15%), Positives = 151/496 (30%), Gaps = 134/496 (27%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQSADL 79
            + + G I+  S+  + + PLG +  +N+ A      +R  ++  G   +    +    +
Sbjct: 19  FVFQAGEIYGGSRSAWDYGPLGVELKENIKAEWWKTFVRSREDMVG---LDSSIILPRAV 75

Query: 80  WVESG---------------RYDSYGKEML------------------------------ 94
           W  SG                       +L                              
Sbjct: 76  WEASGHVETFTDPLVECTQCHRRHRQDHLLEAFEAKKGRPAEGMAEIVCPDCGTQGAWTE 135

Query: 95  -------------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                         + +      +   T + +  +       + +  PF   QI   FR+
Sbjct: 136 PQLFSGLVKTYLGPVDNEEGLHYMRPETAQGIFVNFLNVLGAARKKPPFGIGQIGKAFRN 195

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+ P   + R+REF   +   F + P  +   +++        F  LG+    +R     
Sbjct: 196 EITPGNFIFRTREFEQMEIEYF-VPPAEAGQHFDRWVEDCWDWFIDLGIDPANLR----- 249

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  +F V AD                                    ++        
Sbjct: 250 -------KFDVPAD--------------------------------ERAHYSDATIDLEY 270

Query: 262 VHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  D   E   ++ R   ++G H  + GTK        F  A+ + +   +     
Sbjct: 271 DFGFTGGDGWGELMGIANRTDYDLGRHTAHSGTK-----MQYFDQANNEHYTPYVIEPSF 325

Query: 320 GAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                 +     +AP K +++ +    ++   A +
Sbjct: 326 GLTRAMMAFLVDAYAEDEAPNAKGGVDVRTVLKLDPRLAPVKAAVLPLSKKPELQ-PATQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L  +  ++  DD G  IG ++   D +G P  + V    + D  V I+ R T  +
Sbjct: 385 SLAAELRTLW-NIETDDSGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRERDTMAQ 442

Query: 427 EDMSLEEVINYASHRF 442
           E ++L +V +Y   R 
Sbjct: 443 ERVALSQVKSYLLERL 458


>gi|118589124|ref|ZP_01546531.1| seryl-tRNA synthetase [Stappia aggregata IAM 12614]
 gi|118438453|gb|EAV45087.1| seryl-tRNA synthetase [Stappia aggregata IAM 12614]
          Length = 426

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 82/256 (32%), Gaps = 22/256 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
              E P++       L    GM    +    G    +  GQ A     +   + +     
Sbjct: 135 TFNEAPKEHYELGEDL---GGMDFAKAAKLSGSRFVILKGQIARLERALGQFMIDLHTQE 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+S P L  ++    +G+   + +++ +    +       PT E  +T++    I 
Sbjct: 192 NGYTEVSPPLLVHSEPLYGTGQLPKFEEDLFKTTTDH----YLIPTAEIPLTNLVAGEIL 247

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               LP     +   FR E     R   G++R  +F   +  S    PE S     +M  
Sbjct: 248 PEDQLPLRVTALTYCFRSEAGSAGRDTRGMLRQHQFQKCELVSV-TKPEESLDELERMLG 306

Query: 180 SYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
              ++  +LGL    M   SG +G         E  +       ++       DF     
Sbjct: 307 CAEKVLQKLGLHYRVMTLCSGDMGFGARKTYDIEVWLPGQDTYREISSCSVCGDFQARRM 366

Query: 236 NTDFDDIISLNSIVEQ 251
           N  F    S   +   
Sbjct: 367 NARFRPADSKQPVHVH 382


>gi|15901936|ref|NP_346540.1| histidyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111656967|ref|ZP_01407778.1| hypothetical protein SpneT_02001796 [Streptococcus pneumoniae
           TIGR4]
 gi|32130139|sp|Q97NC9|SYH_STRPN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|14973634|gb|AAK76180.1| histidyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
          Length = 429

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVTLPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LG---EGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|332527970|ref|ZP_08404004.1| seryl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332112544|gb|EGJ12337.1| seryl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 430

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 14/255 (5%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLP-LGQKALDNVNAIIREEQ-NRTGA 66
              +  P+D       L L      + +   +++L     +    +   + + Q    G 
Sbjct: 133 RTFEFTPKDHVDVGQPLGLDFDTGARLAGARFTFLRGPAARLHRALAQFMLDTQTQEHGY 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            E   P + + ++   +G+   + ++M  +    D   +      T E  +T+  R  I 
Sbjct: 193 TECWTPYIVNREVLEGTGQLPKFKEDMFWVLRGGDEEQREQYLISTSEIPLTNTVREQIL 252

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               LP         FR E     R   G++R  +F   +     + PE S  +  +M  
Sbjct: 253 DAAALPIKLTAHSPCFRSEAGSAGRDTRGMIRQHQFDKVEMVQI-VRPEDSDAALEQMVG 311

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSE 235
               I  +L L    +   SG +G   +     E  + A     ++    +   F     
Sbjct: 312 HAEAILQKLELPYRVITLCSGDMGFGSAKTYDLEVWLPAQGTYREISSCSNCEAFQARRM 371

Query: 236 NTDFDDIISLNSIVE 250
              F +       V 
Sbjct: 372 QARFRNAQGKTEFVH 386


>gi|292655989|ref|YP_003535886.1| histidyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291370647|gb|ADE02874.1| histidyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 431

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 136/432 (31%), Gaps = 53/432 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P    A   V   +     R G  E+  P L+   ++V +SG  +   +E+  
Sbjct: 6   KGFRDFYPGEMSARREVVDTVETAAARYGFREIGTPHLERTQMYVDKSG--EEIVEELYA 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +  +   +    S    P  +   +  +R E   +    R R
Sbjct: 64  FEDKGGREVALTPELTPTVARMVVAKQQALS---KPIKWVSTRPFWRYEQVQQ---GRFR 117

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEF- 210
           EF   +A  F  +   +           L     LGL       R     I G L   F 
Sbjct: 118 EFYQTNADIFGSSEPEADAEILAFCADAL---TDLGLTADDFEFRVSHRDILGGLLRSFD 174

Query: 211 -----------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA----- 254
                      +  ++  E   +            +  +F D+I    + E         
Sbjct: 175 VDVDVADAVRAVDKSEKVERAEYLGLLSDAGLSYDQADEFADLIERGDLDEIAAFGGDDV 234

Query: 255 -----PYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADG 307
                         ++       E    +ARG++   G +F           ATF    G
Sbjct: 235 EAAVENLRNVLAAADDFGAGEFCEVSLSTARGLDYYTGVVFECFDSTGDVSRATFG---G 291

Query: 308 KDHYVQMGSYGIGAMRVV-----AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +   + S+G  +   V      A ++      G +WPD        L+ +       R
Sbjct: 292 GRYDDLIESFGGQSTPAVGVGIGGATLQLLCQRAG-VWPDEELATDYYLLTVGD----TR 346

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                I   L   G  V  D      G+Q + AD +     VIVG + + + +V +K   
Sbjct: 347 GVASDIARDLRAAGNVVEVDVSDRSFGAQMSYADSVNADTVVIVGERDLENGEVTVKDMA 406

Query: 423 TGIREDMSLEEV 434
           +G +  + +++ 
Sbjct: 407 SGDQTTVPVDDF 418


>gi|227892467|ref|ZP_04010272.1| seryl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227865760|gb|EEJ73181.1| seryl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|300214095|gb|ADJ78511.1| Seryl-tRNA synthetase (Seryl-tRNA(Ser/Sec) synthetase)
           (Serine--tRNA ligase) (SerRS) [Lactobacillus salivarius
           CECT 5713]
          Length = 425

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG K    V   + +E  + G  E+  P +  A     +G++  +  ++ ++  
Sbjct: 163 FVFYKGLGAKLERAVYNFMLDEHAKEGYTEVIPPYIVKAKSMYGTGQFPKFKDQVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +    +LP  F  +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYREEVIPTEDLPVYFTALSPSFRSEAGSAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S +   KM  +   I  +LGL    +   +G +G   +     E 
Sbjct: 280 FNKVEMVKY-TKPEDSYNELEKMTKNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     ++    +  DF        + D   
Sbjct: 339 WMPAQDTYREISSCSNCEDFQARRARIQYRDENG 372


>gi|227546856|ref|ZP_03976905.1| glycine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620833|ref|ZP_04663864.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132438|ref|YP_003999777.1| glyrs [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481588|ref|ZP_07940624.1| glycyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689557|ref|YP_004209291.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691518|ref|YP_004221088.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|227212818|gb|EEI80699.1| glycine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516409|gb|EEQ56276.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311773043|gb|ADQ02531.1| GlyRS [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916948|gb|EFV38334.1| glycyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456374|dbj|BAJ66996.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460893|dbj|BAJ71513.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 490

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 162/493 (32%), Gaps = 77/493 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M +SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAQSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +   ++WV SG    +     E L    RN    +     E+   
Sbjct: 54  MVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECLNCHKRNRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K              + +  E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 KMPENGMKD-----IVCPNCGTRGQWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGI 168

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
           +             +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 169 F-------------VDFKNVMTSSRSRPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F  P  + ++                    +  H E   +   +    S R +++ + 
Sbjct: 216 EFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKE---KLSHYSKRTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T Y L   +   G D        G+ +   +     G  R + 
Sbjct: 273 FGFQGSDWGELEGIANRTDYDLSAHSKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +  ++D                +     +AP K +++ +    ++     + +   L 
Sbjct: 333 CFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQNLADDLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++
Sbjct: 392 FNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQERVALDK 450

Query: 434 VINYASHRFSNNR 446
           V +Y + R    R
Sbjct: 451 VADYVAARIGEKR 463


>gi|311278555|ref|YP_003940786.1| histidyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308747750|gb|ADO47502.1| histidyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 424

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 139/441 (31%), Gaps = 55/441 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++E     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETALWQRIEGTLKEVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVSLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     + F  K   D            + S+N D   ++     +  +    +    
Sbjct: 178 REALVAYLEQFKDKLDEDCKRRMYTNPLRVLDSKNPDVQALLDNAPALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L D+      V+ R +  G  +Y  T +    ++   G+ G          G   
Sbjct: 238 SGLCALLDAAGIAYTVNQRLV-RGLDYYNRTVFEWVTNS--LGSQGT------VCAGG-- 286

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++E            ++   ++ L+    + +   D    IY  L   G D   
Sbjct: 287 --RYDGLVEQLGGRAAPAVGFAMGLERLVLLVQAVNPEFKADPVVDIY--LVAAGNDTQS 342

Query: 382 -------DDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                  D   +  G +             FA AD  G  + +++G   +++  V +K  
Sbjct: 343 AAMRLAEDVRDQLPGVKLMTNHGGGNFKKQFARADKWGARVALVLGESEIAERSVVVKDL 402

Query: 422 LTGIREDMSLEEVINYASHRF 442
            +G +  ++ + V  +     
Sbjct: 403 RSGEQTTVAQDSVAAHLRTLL 423


>gi|253580799|ref|ZP_04858062.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847869|gb|EES75836.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 475

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 118/362 (32%), Gaps = 73/362 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 169 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 228

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P+     +       L   H LGLK                
Sbjct: 229 FTFRTREFEQMELEFF-CEPDTDLEWFAYWKNFCLNWLHSLGLKD--------------- 272

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D        +F        +           +   N   
Sbjct: 273 EEVRYRDHDAEELSFYSKATTD-------VEFLFPFGWGELWGIADRTDYDLTQHQNVSG 325

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D                                F     + +   +    +GA RVV A
Sbjct: 326 QDL-----------------------------TYFDDEKKQKYIPYVIEPSLGADRVVLA 356

Query: 328 VIESSHDGKGI-----------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            + S++D + +            +  ++AP KI ++ +        +  EKIY +LSK  
Sbjct: 357 FLCSAYDEEVLDAEKNDVRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKIYQQLSKK- 412

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  +DD G  IG ++   D +G P  V    +  +D  V I+ R T  +  + ++E+  
Sbjct: 413 YNCEYDDRGN-IGKRYRRQDEIGTPFCVTYDFESENDGAVTIRDRDTMEQVRVKIDELDA 471

Query: 437 YA 438
           Y 
Sbjct: 472 YF 473


>gi|302391507|ref|YP_003827327.1| histidyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302203584|gb|ADL12262.1| histidyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 420

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 134/436 (30%), Gaps = 45/436 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           +  +G    LP        +    R+   R    E+  P  ++ DL+    G   D   K
Sbjct: 4   KKPRGTNDILPEDSLKWQYIEDTARDICTRYNYEEIRTPIFENTDLFQRGIGEATDIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P     +   F  H    +  P  ++     FR E RP+ G  R
Sbjct: 64  EMYTFNDKGGRSITLRPEGTASVVRAFLEHKIYGQAQPTKYFYYGPMFRYE-RPQSG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F                     +    L+I   LGL  + +   S  +G  +  E  
Sbjct: 121 YRQFHQMGVEVLGTDSPAIDAE---VISLGLQILKELGLSDLEVHLNS--VGCPVCREDY 175

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                        +   D     +      +   N   +++TA      D   E   D  
Sbjct: 176 REELRDHFADDLEELCSDCQSRYDRNPLRILDCKNEKCQEYTADAPEIIDSLCEDCADHF 235

Query: 272 PENKRVSARGIEVGHIFYF----GTKY--SLPMSATFKG------------------ADG 307
            E +    R +++ +I       G  Y         + G                    G
Sbjct: 236 KEVQNYLQR-LDIDYIIDSSLVRGLDYYTKTAFEIMYTGLGAQDTIFGGGRYDGLAEEIG 294

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +G + +G  R++ A+ E   D              + +  I    Q  ++   +
Sbjct: 295 GREIPGIG-FAMGMERIILALEEQDVD------LPLTTDLDLFITTIG---QPAKETAFE 344

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              +L + G  V  D +G  +  Q   AD       +I+G   +      +++  TG   
Sbjct: 345 YLYQLRQAGLKVEMDYLGRSVKGQMKCADRTNAQYSIILGGNELEKGTATVRNMETGEET 404

Query: 428 DMSLEEVINYASHRFS 443
           ++ L  ++   +   +
Sbjct: 405 EIKLNNLVEEMNELIA 420


>gi|23336633|ref|ZP_00121840.1| COG0423: Glycyl-tRNA synthetase (class II) [Bifidobacterium longum
           DJO10A]
 gi|189438997|ref|YP_001954078.1| glycyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|189427432|gb|ACD97580.1| Glycyl-tRNA synthetase class II [Bifidobacterium longum DJO10A]
          Length = 490

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 162/493 (32%), Gaps = 77/493 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M +SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAQSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +   ++WV SG    +     E L    RN    +     E+   
Sbjct: 54  MVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECLNCHKRNRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K              + +  E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 KMPENGMKD-----IVCPNCGTRGQWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGI 168

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
           +             +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 169 F-------------VDFKNVMTSSRSRPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F  P  + ++                    +  H E   +   +    S R +++ + 
Sbjct: 216 EFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKE---KLSHYSKRTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T Y L   +   G D        G+ +   +     G  R + 
Sbjct: 273 FGFQGSDWGELEGIANRTDYDLSAHSKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +  ++D                +     +AP K +++ +    ++     + +   L 
Sbjct: 333 CFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQSLADDLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++
Sbjct: 392 FNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQERVALDK 450

Query: 434 VINYASHRFSNNR 446
           V +Y + R    R
Sbjct: 451 VADYVAARIGEKR 463


>gi|322412866|gb|EFY03774.1| histidyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 426

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 149/445 (33%), Gaps = 61/445 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D 
Sbjct: 1   MAFQKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    + RS++++         P   Y I   FR E 
Sbjct: 61  VTKEMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R REF       F      +      M  +Y  +F +LG+K + +   S    
Sbjct: 117 RPQAG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSP 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P+   LS +     D    +V  SK+  D     +     D +  
Sbjct: 172 ESRAAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDE 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPM 298
            S                  +  D          RG++     IF F     G+  ++  
Sbjct: 232 ESQAHFEAVKAML-------EALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICA 284

Query: 299 SATFK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              +    G  G       G +G+G  R++  +     + +G+  P       + L  + 
Sbjct: 285 GGRYDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGLTLPIE-TEMDVYLAVLG 337

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      ++   +   G     D +G +I +QF  AD     L + +G   V   K
Sbjct: 338 DG---ANSKALELVQAIRHQGFTAERDYLGRKIKAQFKSADTFKAKLVITLGESEVEAGK 394

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
             IK+  +    ++S E+++   ++
Sbjct: 395 AVIKNNRSRQELEVSFEDIMTNFAN 419


>gi|19553476|ref|NP_601478.1| glycyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62391119|ref|YP_226521.1| glycyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|145296232|ref|YP_001139053.1| glycyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|59798594|sp|Q8NNC6|SYG_CORGL RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|21325049|dbj|BAB99671.1| Glycyl-tRNA synthetase, class II [Corynebacterium glutamicum ATCC
           13032]
 gi|41326458|emb|CAF20620.1| GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846152|dbj|BAF55151.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 461

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 119/346 (34%), Gaps = 40/346 (11%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFL 156
           D  +      P   + +   F++ + + R  P F    I   FR+E+ P   + R+REF 
Sbjct: 152 DDEEGLHYLRPETAQGIFVNFKNVMNTSRMKPPFGIANIGKSFRNEITPGNFIFRTREFE 211

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F + P   +  +     + L+ +  LG+K   +R    P    LSH      D 
Sbjct: 212 QMEMEFF-VKPGEDEEWHQHWIDTRLQWYINLGIKPENLRLYEHP-QEKLSHYSKRTVDI 269

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                F +  + +    +  TD+D  +      E  +     T++     + +      R
Sbjct: 270 EYAFNFANTKWGELEGIANRTDYDLRVHSEGSGEDLSFFDQETNERWIPFVIEPAAGLGR 329

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                +               M A  +               +   R             
Sbjct: 330 AMMMFL---------------MDAYHEDEAPNSKGGVDKRVVLKLDRR------------ 362

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +AP K++++ +   D       EK+ A L +   +V +D  G  IG ++   D
Sbjct: 363 -------LAPVKVAVLPLSKKD-TLTPLAEKLAAELREFW-NVDYDTSGA-IGRRYRRQD 412

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G P  V V    + D+ V ++ R T  +  + L+E+  Y + R 
Sbjct: 413 EIGTPFCVTVDFDSLEDNAVTVRERDTMEQVRVPLDELQGYLAQRL 458


>gi|331265541|ref|YP_004325171.1| histidyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326682213|emb|CBY99830.1| histidyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 426

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVTLPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SL+ +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLDAINQNFSEIFEK 423


>gi|153810740|ref|ZP_01963408.1| hypothetical protein RUMOBE_01124 [Ruminococcus obeum ATCC 29174]
 gi|149833136|gb|EDM88218.1| hypothetical protein RUMOBE_01124 [Ruminococcus obeum ATCC 29174]
          Length = 464

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 118/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y +              +     G   
Sbjct: 214 FTFRTREFEQMELEFFCEPDTDLE------WFAYWK----------KFCLDWLSSLGLKD 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D        +F        +           +   N   
Sbjct: 258 DEVRYRDHDKEELSFYSKATTD-------VEFLFPFGWGELWGIADRTDYDLTQHQNVSG 310

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D                                F     + +   +    +GA R+V A
Sbjct: 311 QDL-----------------------------TYFDDEKKQKYIPYVIEPSLGADRMVLA 341

Query: 328 VIESSHDGKGI-----------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            + S++D + +            +   +AP KI ++ +        +  EKI+ +LSK  
Sbjct: 342 FLCSAYDEEVLDAEKNDVRTVLHFHPVLAPVKIGVLPLSKK---LNEGAEKIFQKLSKK- 397

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  +DD G  IG ++   D +G P  +    +  +D  V ++ R T  +  + +EE+  
Sbjct: 398 YNCEFDDRGN-IGKRYRRQDEIGTPFCITYDFESENDGAVTVRDRDTMEQVRVKIEELEA 456

Query: 437 YASHRF 442
           Y + +F
Sbjct: 457 YFADKF 462


>gi|15903972|ref|NP_359522.1| histidyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116515787|ref|YP_817338.1| histidyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|221232832|ref|YP_002511986.1| histidyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|32130105|sp|Q8DN46|SYH_STRR6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122277816|sp|Q04I50|SYH_STRP2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782348|sp|B8ZPP6|SYH_STRPJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|15459628|gb|AAL00733.1| Histidyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116076363|gb|ABJ54083.1| histidyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|220675294|emb|CAR69887.1| histidyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|332198937|gb|EGJ13018.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 429

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|114565586|ref|YP_752740.1| Serine--tRNA ligase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122319230|sp|Q0B0Y5|SYS_SYNWW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|114336521|gb|ABI67369.1| seryl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 427

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 17/224 (7%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    V     +      G  E+  P +  AD  V +G+   + ++M +L     K M
Sbjct: 169 GARLERAVINFYLDIHCGEHGYREILPPFMVIADCMVGTGQLPKFAEDMFKL---EGKDM 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I   ++LPF        FR E     R   GV+R  +F   + 
Sbjct: 226 YLIPTAEVPLTNLYREEILEAKDLPFYLTAYTPCFRAEAGSHGRDTRGVIRQHQFNKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                 P+ S     K+     R+   LGL    +   +G +G          A      
Sbjct: 286 VKL-CEPQNSYEELEKLTKDAERVLQLLGLPYRVVVLSTGDMGFS--------AAKTYDI 336

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                 + D+   S  ++ +D  +  + +     P A    VH 
Sbjct: 337 EVWMPGYQDYREISSCSNCEDFQARRANIRYRPDPKAKLQYVHT 380


>gi|262305769|gb|ACY45477.1| glu- + pro-tRNA synthetase [Nicoletia meinerti]
          Length = 134

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+ G   + G  +S      +   +  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGGTSHHLGQNFSKMFEIVYDDPETHEKRYVYQNSWGLT-TRTIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQVCRDA---CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++     +   D   +     CEK+  +L   G  V  D       
Sbjct: 74  GLVLPPRVASVQVVIVPCGITVNTSDADRKMLVTSCEKLEKQLLDAGVRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|260578228|ref|ZP_05846146.1| glycine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603643|gb|EEW16902.1| glycine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 484

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 117/350 (33%), Gaps = 41/350 (11%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + D+     +   T + + T+       S +  PF   Q+   FR+E+ P   + R+RE
Sbjct: 173 PVDDKEGLHYLRPETAQGIFTNFKNVMTTSRQKPPFGIAQVGKSFRNEITPGNFIFRTRE 232

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F + P   +  +        + +  LG+K   +R    P             
Sbjct: 233 FEQMEMEFF-VKPGEDEEWHQYWIDDRHQWYIDLGIKPENLRLYEHP------------- 278

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E     SK  +D                             +     +  F      
Sbjct: 279 --KEKLSHYSKRTVDVEYAFHFNGSKWGELEGVANRTDYDLRVHSEGSGEDLSFYDQTTE 336

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +R     IE       G      M A    A  ++      + G    R V         
Sbjct: 337 ERWIPYTIEPA--AGLG----RAMMAFLVDAYTEEEVP--NAKGGTDTRTV--------- 379

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFA 393
              +     +AP KI+++ + +  +      EKI  +L   G  +V +D  G  IG ++ 
Sbjct: 380 ---LKLDRRLAPVKIAVLPL-SKKETLTPTAEKIAGQLR--GFWNVDYDTSGA-IGRRYR 432

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D +G P  V V    + D+ V ++ R T  +E + +E++ +Y + R +
Sbjct: 433 RQDEIGTPFCVTVDFDTLEDNAVTVRERDTMEQERIKIEDLQSYFAERLA 482


>gi|166077802|gb|ABY80995.1| glutamyl-prolyl tRNA synthetase [Hemimysis anomala]
 gi|166077804|gb|ABY80996.1| glutamyl-prolyl tRNA synthetase [Hemimysis anomala]
          Length = 145

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           R I+     + G  +S     TF+    + K  +V   S+GI   R +  ++    D KG
Sbjct: 24  RAIQGATSHHLGQNFSKMFEITFEDPKCNDKKQFVYQNSWGIT-TRTIGVMVMVHGDDKG 82

Query: 338 IIWPDSVAPFKISLINI-----KAHDQVCR--DACEKIYARLSKVGCDVFWDDMGE-QIG 389
           ++ P  VA     ++ +        ++     DA +K+   L K    V  D        
Sbjct: 83  LVLPPRVAALHCIIMPVGITAKTTEEERVALIDAAKKLEEELGKGDIRVECDFRDNVTPA 142

Query: 390 SQF 392
            +F
Sbjct: 143 WKF 145


>gi|305680817|ref|ZP_07403624.1| glycine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659022|gb|EFM48522.1| glycine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 459

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 65/486 (13%), Positives = 132/486 (27%), Gaps = 144/486 (29%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK------ 91
           + + PLG +  +N+         +  A  + +    +    +W  SG  +++        
Sbjct: 32  WDYGPLGVELKENIKKQWWRTFVQGRADMVGLDSSIILPRQVWEASGHVETFTDPLVESL 91

Query: 92  --------------------------------------------EML---------RLAD 98
                                                       +M           + +
Sbjct: 92  HTHKRYRADHLLEAYEQKHGHPPANGLADVPDPETGQPGAWTEPQMFSGLMKTFLGPVDN 151

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                 +   T + +  +       +    PF   Q+   FR+E+ P   + R+REF   
Sbjct: 152 EQGLHYMRPETAQGIFINFKNVQTTARMKPPFGIGQVGKAFRNEITPGNFIFRTREFEQM 211

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +   F ++P  +   + +                                          
Sbjct: 212 EIEYF-VSPSDAPEKFQE------------------------------------------ 228

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              +    +  F     N D      +        +      +           E   V+
Sbjct: 229 ---WVDACWDWFIDLGINPDNMRQFDVPKEERAHYSAGTIDFEYRFGFAGSEWGELMGVA 285

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIE 330
            R           T Y L     + G D        G+ +   +     G  R + A + 
Sbjct: 286 NR-----------TDYDLGSHIKYSGEDLSYFDQVTGERYVPYVIEPSFGLTRAMMAFLC 334

Query: 331 SSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-G 376
            ++                 +     +AP K++++ +   D       E I A L K+  
Sbjct: 335 DAYHEDEAPNAKGGVDKRTVLRLDRRLAPVKVAVLPLSKKD-TLLPTAEAIAADLRKLWN 393

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D  +D  G  IG ++   D +G P  V V    + D  V ++ R T  +E ++++E+  
Sbjct: 394 ID--YDIAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDRSVTVRERDTMAQERVAIDELPA 450

Query: 437 YASHRF 442
           Y   R 
Sbjct: 451 YLGARL 456


>gi|311895944|dbj|BAJ28352.1| putative glycyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 460

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 68/447 (15%), Positives = 144/447 (32%), Gaps = 66/447 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+               + +    + + ++W  SG   ++      L 
Sbjct: 33  WDYGPLGVELKENIKRQWWRAMVTAREDVVGLDSSVILAREVWEASGHVATFND---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +       +   H E   +    H K   N       I          +      +EF  
Sbjct: 90  ECLSCHKRFRADHLEEAYE--AKHGKVPANG---LADINCP---NCGNKGAFTEPKEFSG 141

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGDLSHE 209
                  +T + +  +Y +   +   IF         ++  S          +G    +E
Sbjct: 142 MLKTHLGVTEDAAGLAYLR-PETAQGIFT----NFRAVQTTSRKKPPFGIAQVGKSFRNE 196

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                    T+ F   +   F  P E+  + +                  +    E   +
Sbjct: 197 ITPGNFIFRTREFEQMEMEFFVKPGEDETWHEYWLEQRWNWYVDLGLRTENMRFFEHPKE 256

Query: 270 SLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GK 308
              +    + R +++ + F FG             T Y L + +   G D         +
Sbjct: 257 ---KLSHYAKRTVDIEYRFNFGGSEFSELEGVANRTDYDLTVHSEHSGQDLKYFDQDANE 313

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGK-------------GIIWPDSVAPFKISLINIK 355
            ++  +     G  R + A +  ++                G+     +AP K++++ + 
Sbjct: 314 RYFPYVIEPAAGLNRAMLAFLLDAYFEDEAPNAKGVMEKRVGMRLDPRLAPVKVAVLPL- 372

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + +         + A L     +V +DD G  IG ++   D +G P  V V    + D+ 
Sbjct: 373 SRNADLSPKARGLAADLRSAW-NVEFDDAGA-IGKRYRRQDEIGTPFCVTVDFDTLEDNA 430

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R T  +E +SL++V +Y + R 
Sbjct: 431 VTVRDRDTMAQERVSLDQVKSYLATRL 457


>gi|167772470|ref|ZP_02444523.1| hypothetical protein ANACOL_03848 [Anaerotruncus colihominis DSM
           17241]
 gi|167665573|gb|EDS09703.1| hypothetical protein ANACOL_03848 [Anaerotruncus colihominis DSM
           17241]
          Length = 465

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 141/431 (32%), Gaps = 43/431 (9%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GR 85
              ++    +G    LP        +     +     G  E+ VPT +  +L+  S    
Sbjct: 28  EMALLTSAPRGTQDVLPSQSARWRYIEETALDTARLFGFEEIRVPTFEHTELFNRSVGDT 87

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            D   KEM    D+ D+++   P     +      +      LP     +   FR E +P
Sbjct: 88  TDVVQKEMYTFFDKGDRSITLRPEGTAGVMRAILQNGLIGGPLPVKASYVVSCFRYE-KP 146

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIG 203
           + G  R REF     +  ++    S  +  ++      +F  LG+  + +   S   P  
Sbjct: 147 QAG--RLREFHQ---FGVEMAGAASPAADAQVIALAKAVFDALGVTGLALEINSIGCPEC 201

Query: 204 GDLSHE---FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
               HE       A  GE    C       P+   +        + +   +         
Sbjct: 202 RARYHEALRAYFQARAGELCDTCRARLEKNPMRILDCKSPVCSQIAAGAPRVLDYICDGC 261

Query: 261 DVHNE---KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK--------- 308
             H E      D+L     V    I  G  +Y  T+      AT  GA G          
Sbjct: 262 RAHFEGLKTRLDALGIAYTV-NPAIVRGLDYY--TRTVFEFVATGIGAQGTVCGGGRYDG 318

Query: 309 ------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                         + +G  R++  +     D +G  +P+     +   + I +  +   
Sbjct: 319 LIEMLGGAPTPSIGFAMGLERLLLVM-----DQQGCAFPEP----QWCTMYIGSMGEAAS 369

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   L + G     D +G  + +Q   AD LG     I+G   ++  KV +K   
Sbjct: 370 VRAMQLADGLRQEGFWAECDTVGRSVKAQMKYADKLGAKFSCILGDNELAAGKVTVKRMD 429

Query: 423 TGIREDMSLEE 433
            G + +++L+E
Sbjct: 430 NGTQTELTLDE 440


>gi|16803560|ref|NP_465045.1| histidyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501540|ref|ZP_03669847.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|254829721|ref|ZP_05234376.1| histidyl-tRNA synthetase [Listeria monocytogenes 10403S]
 gi|32130129|sp|Q8Y708|SYH_LISMO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|16410949|emb|CAC99598.1| histidyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 425

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +    +         E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  +++   P     +   F  H K Y  +  P   Y  +  FR E RP+ G 
Sbjct: 64  EMYTFQDKGGRSLTLRPEGTASVVRAFVEH-KLYGEVSQPIKMYYNEPMFRYE-RPQGG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-- 207
            R R+F      +              +    +  F ++GL +I +   S  +G   S  
Sbjct: 121 -RQRQFTQMGIEALGSDDPSIDVE---VISLAMEFFRKIGLTNIKLVINS--LGDKESRL 174

Query: 208 --------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSI 248
                          EF             ++   K   D P I S  +  D +   +  
Sbjct: 175 KHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVA 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG--- 304
             +    Y    ++  E     +      +    E+  +   FG K +L     + G   
Sbjct: 235 YFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVR 294

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      MG +GIG  R++ A+     +   I  P    P ++ +I  +   ++    
Sbjct: 295 EFGGPDTPGMG-FGIGVERILLAL-----EKADIEIPAK-KPLEVYVITAQPEAEL---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG
Sbjct: 345 GVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETG 404

Query: 425 IREDMSLEEVINYASH 440
            +E +S   ++   S+
Sbjct: 405 EQEAVSETTILEKLSN 420


>gi|315504260|ref|YP_004083147.1| glycyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315410879|gb|ADU08996.1| glycyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 459

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 150/443 (33%), Gaps = 59/443 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + +  +W  SG    +      L 
Sbjct: 33  WDYGPLGVELKENVRRQWWRTMVQQRDDVVGLDSAVILARKVWEASGHIAEFVD---PLT 89

Query: 98  DRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-EF 155
           +       +   H EE         + S   L       +  F  E +   G+M++    
Sbjct: 90  ECQSCHKRFRADHLEEAYEAKHGKPLTSLTELNCPNCGNKGTF-TEPKMFNGLMKTYLGP 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  D     L PE ++     +FV+Y  +          +  +  P G   + +      
Sbjct: 149 VESDEGMHYLRPETAQ----GIFVNYKNV--------ETVARKKPPFGIAQTGKSFRNEI 196

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T    +F +++F    +        D       + +    Y           F   P+ K
Sbjct: 197 TPGNFIFRTREFEQMEMEFFVEPGTDEQWHEYWLSERWNWYLDLGLSEENLRFYEHPKEK 256

Query: 276 --RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYV 312
               S R +++ + F FG             T + L   +   G D        G+    
Sbjct: 257 LSHYSKRTVDIEYRFRFGGSEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQGKGERWMP 316

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R V A +  ++D                + +   +AP K++++ + + ++
Sbjct: 317 YVIEPAAGLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPL-SRNE 375

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++   L K    V +DD    IG ++   D +G P  V V    + D+ V ++
Sbjct: 376 ALSPKAKQLATDLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVR 433

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           +R T  +E +SL++V  Y   R 
Sbjct: 434 NRDTMAQERVSLDQVERYLIERL 456


>gi|217316831|gb|ACK37821.1| putative glutamyl-prolyl tRNA synthetase [Euastacus eungella]
          Length = 134

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           RGI+     + G  +S      F+  +  +  Y    S+G+   R +  ++    D KG+
Sbjct: 17  RGIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGLT-TRTIGVMVMVHGDDKGL 75

Query: 339 IWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           + P  VA  +  ++ +               DAC K+ A L+  G     D   
Sbjct: 76  VLPPRVASVQAIIMPVGITAKSSEQDKSSLMDACNKLAADLNAAGVRARCDLRD 129


>gi|296108860|ref|YP_003615809.1| glycyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295433674|gb|ADG12845.1| glycyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 570

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R+   ++E S+    D   +     +AP K  +  +  + +   
Sbjct: 430 GEKVVPHVIEPSFGIDRIFYCLLEHSYREEEDRAYLDLKPEIAPIKAYVFPL-VNREGMP 488

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  ++I   L +      +DD G  IG ++  AD +G P  + V  + + D+ V ++ R 
Sbjct: 489 ELAKRIRDMLRENKIIAEYDDSGA-IGRRYMRADEIGVPFCITVDGQTLKDNTVTVRDRN 547

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           T  +E + +EE+++Y   + S+
Sbjct: 548 TREQERVKIEELVDYLRSKISS 569



 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 64/209 (30%), Gaps = 63/209 (30%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESG----------- 84
            G   + PLG    +N+    RE    + G  E+  PT+   ++   SG           
Sbjct: 28  AGFVDYGPLGCLLKNNIINKFRERFIVKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 87

Query: 85  --------RYDSYGKE----------------------------------------MLRL 96
                   R D   +E                                        M   
Sbjct: 88  CKNCLENFRADHIIEEQVDIDTESLSLKELEEVIKKYNIRCPKCGGEFGEVKKFNLMFVT 147

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
           +      +     P   + +   F+   + +RN LPF   QI   +R+E+ PR GV+R R
Sbjct: 148 SIGPGKGRRGFLRPETAQGIFIQFKRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLR 207

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           EF   +   F    +     ++++    L
Sbjct: 208 EFTQAEIEYFVHPEKKEHEKFDEVKDLIL 236


>gi|306826279|ref|ZP_07459613.1| histidine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431555|gb|EFM34537.1| histidine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 426

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 142/444 (31%), Gaps = 57/444 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVVSRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D           DF D  S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDAESQ 234

Query: 246 NSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSA 300
                              D +  +  D            IE   +    G +Y   + A
Sbjct: 235 AHFDAVRQMLENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGRY-DGLVA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G +          +G+G  R++  +     + +G+  P   A   + +  +    + 
Sbjct: 294 YFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAVLG---EE 339

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +K+
Sbjct: 340 ANVKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVTVKN 399

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             T    +++L+ +    S  F  
Sbjct: 400 NQTREEVEVTLDVISQNFSEVFEK 423


>gi|260101665|ref|ZP_05751902.1| histidine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260084525|gb|EEW68645.1| histidine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 428

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 142/438 (32%), Gaps = 62/438 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSSNPLADVQTIMMG---HDLLGELGVKNYQLHINTLGDEQVRKGY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SKD  D     +     D +  NS    
Sbjct: 178 HDALVNYFTPVKDKLSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDNSKANF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +          +  + D            + E         E       G +Y      
Sbjct: 238 ESILKMLDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKA 356
             +  +G +       +GIG  R++  V+E         +GI            + NI  
Sbjct: 294 LVEEFNGPETPAV--GFGIGEERLML-VLEKQNPELFKNEGI---------DFFITNIG- 340

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +       +I   L K G +  +D   +++  QF  AD  G    + +G K +++  +
Sbjct: 341 --EGTAQKAIEIVRSLRKQGFEADFDVNQKKLKGQFKKADREGAKYVITLGEKELANGVL 398

Query: 417 EIKHRLTGIREDMSLEEV 434
            IK    G   D+SLE++
Sbjct: 399 NIKRLADGKTIDLSLEDI 416


>gi|207744373|ref|YP_002260765.1| prolyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206595778|emb|CAQ62705.1| probable prolyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 84

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R   ++++A L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R
Sbjct: 2   RAEADRLHAELAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGR 61

Query: 422 LT 423
             
Sbjct: 62  RD 63


>gi|313893030|ref|ZP_07826607.1| histidine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442383|gb|EFR60798.1| histidine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 423

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 135/443 (30%), Gaps = 51/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G   +LP        +   +RE     G  E+  P  +   L++       D 
Sbjct: 1   MAIRKPRGTQDFLPEQMINWHYIEQRMREICKVYGFNEIRTPAFEDTKLFLRGIGETTDV 60

Query: 89  YGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM      D    +    P +       +  +    +     +Y +   FR + +P+
Sbjct: 61  VQKEMYTFTTGDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHD-KPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
            G  R R+F    A                M V   ++    GLK + +   S       
Sbjct: 120 AG--RYRQFHQFGAEVLGSQSPVVDSEVICMVV---QLLKDFGLKDLNVEVNSVGCPTCR 174

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+  +    F    +  + Q+        +  P    D  +    +  V           
Sbjct: 175 PVYREKLIAFF---EPKKEQLCSDCQERLYKNPLRILDCKNETCKSLSVGAPEIHEHLCG 231

Query: 261 DVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT----------- 301
           + H+            +          RG++      F  +Y+ P+ A            
Sbjct: 232 ECHDHFEELKTYLTAANVQYTLNPRLVRGLDYYTKTAFEVQYT-PLGAQSAVAGGGRYDG 290

Query: 302 -FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG         + +G  R++ A+       K  + P+      + ++ +      
Sbjct: 291 LVEELDGPHTPAI--GFAMGMERLLLAL------EKQNLLPEPTVESSVFVVALG---DA 339

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +    KI   L      V  D  G+ + +Q   A+ +     +I+G   ++  +  I+ 
Sbjct: 340 AKVEAFKICQALHDAYVTVEMDGQGKSMKAQLKYANKINAKYVIILGDDELARGEAIIRF 399

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             T  +E +SL+ V    +    
Sbjct: 400 MDTSEQETVSLDAVSERITSLVK 422


>gi|254425393|ref|ZP_05039111.1| histidyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196192882|gb|EDX87846.1| histidyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 431

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 150/434 (34%), Gaps = 31/434 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G    LP        +  I R+  +++   E+  P  + ++L+    G   D+ GK
Sbjct: 5   QAIRGTRDILPSESPLWVVIEGIARQVLSQSAYREIRTPIFEMSELFARGIGEATDAVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR  +++   P     +   F  +    +      + +   FR E RP+ G  R
Sbjct: 65  EMYSFEDRGGRSIALRPEITAGLVRAFIQNKLFAQGGVQRLWHLGPAFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD-LSHEF 210
            R+F   D          +      +     +I + LGLK++ +   S   G D  ++  
Sbjct: 122 QRQFHQLDVEILGSRDARADVE---IIAIATQILNTLGLKALSLDLNSVGSGEDRRNYRD 178

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            ++A     ++    D  D    +     D        +              + + FD+
Sbjct: 179 ALVAYFTPYKLELDTDSRDRLDRNPLRILDSKDKRTQEIVTDAPSLLDFLSDDSRRHFDA 238

Query: 271 LPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           + ++  ++  GI+         G  Y               +      G Y     ++  
Sbjct: 239 VQQH--LTNIGIDFTINPRLVRGLDYYTHTAFEIQSSDLGAQATVCGGGRYDGLVAQLGG 296

Query: 327 ----AVIESSHDGKGIIWPDSVAPF------KISLINIKAHDQVCRDACEKIYARLSKVG 376
               A+       + +I  + +  +       I LI+     ++      K+  +L + G
Sbjct: 297 PDTPAIGFGMGMERLVILLEQMGQYTTEPLLDIYLISRGKKAELQ---SVKLAHQLRQNG 353

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI- 435
             V  D  G   G QF  AD  G  L +I+G   V   KV++K   +  + +++  E++ 
Sbjct: 354 YSVEVDLSGSAFGKQFKRADRSGAVLGLILGDAEVDAQKVQLKWLGSNEQSELTQAELVK 413

Query: 436 --NYASHRFSNNRP 447
             +    + +  R 
Sbjct: 414 KMDEIKSKIAAVRA 427


>gi|87309331|ref|ZP_01091467.1| glycyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87287970|gb|EAQ79868.1| glycyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 536

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 122/371 (32%), Gaps = 48/371 (12%)

Query: 93  MLRLADR----NDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +         + +    P   + +   F++ + S R  +PF   Q+   FR+E+ PR 
Sbjct: 195 MFKTTVGALGGEENSAYLRPETAQGIFVNFKNVVDSSRVRIPFGIAQVGKSFRNEITPRN 254

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F   P  S   Y        + +  +GL    +R          S
Sbjct: 255 FTFRSREFEQMEIEFFCH-PSSSADWYTYWRNRRFQWYLDMGLAGDKLRLRE-----HHS 308

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    + TG   +  +  F+      E          +            ++ +  E  
Sbjct: 309 DELSHYS-TGTADIEYAFPFLPTGEYGELEGIAHRGDFDLRSHMEGKLDPNSNPLTLELD 367

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVA 326
            +  P+++                         T++     +     +     GA R   
Sbjct: 368 ANGKPKHRGSGK-------------------DLTYRDDLTNERFTPHVVEPSAGADRATL 408

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           A +  ++                 +     +AP K ++  +   D    +  + IY  L 
Sbjct: 409 AFLCEAYTEDEAPDENGKLQSRLVMKLHPRIAPIKAAVFPLVKKD-GMPEMSQDIYRALK 467

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K   +VF+D+ G  +G ++   D  G P  + V  + ++D  V I+HR T  +  +  ++
Sbjct: 468 KK-FNVFYDEKGA-VGRRYRRQDEAGTPFCITVDGQSITDGTVTIRHRDTLEQWRVKQDD 525

Query: 434 VINYASHRFSN 444
           V+       S 
Sbjct: 526 VVAEIDKLISE 536


>gi|42522656|ref|NP_968036.1| histidyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|39573852|emb|CAE79029.1| hisS [Bdellovibrio bacteriovorus HD100]
          Length = 460

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 142/428 (33%), Gaps = 45/428 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGK 91
           Q  +G    LP        V     E+    G  E+  P  + +D++  + G   D   K
Sbjct: 50  QRVRGTRDLLPEDSILFRFVEESAYEKALLYGYGEIETPIFEFSDVFHRTLGETSDVVNK 109

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  +++   P     +   F S     +NLP  FY     FR E RP+ G  R
Sbjct: 110 ETYDFTDRGGESLTLRPEGTAGVARAFISEGMM-QNLPLKFYYSGPMFRYE-RPQKG--R 165

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGG 204
            R+F    A         +             +  ++G+             AES     
Sbjct: 166 YRQFYQLGAECLGYESPLADVET---ISLAWDLLKKIGISDDCTLEINTLGDAESRAAYR 222

Query: 205 D------------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           D            LS +  +  +    ++  SKD  D  + +     +  ++  S     
Sbjct: 223 DTLVNYFTAHKDQLSEDSKMRLEKNPLRILDSKDEGDKKLNANAPKLEQSLNQTSQDFFK 282

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDH 310
                        K+ D          RG++     +F F T           G  G+  
Sbjct: 283 KVIAGIEKLGIPYKIND-------HLVRGLDYYCHTVFEFTTTKLGAQGTVLAG--GRYD 333

Query: 311 YVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +     G        AA I+   D    + P  +A  K  +I +   D+   D   K+ 
Sbjct: 334 GLIETMGGPKTPGVGWAAGIDRLAD----LTPKELATKKEVIIAVVGADEQGEDESVKVA 389

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             +   G        G ++G +   A+ LG    +I+G   V++  V +K+  TG ++++
Sbjct: 390 HEMRVRGFKTENFLSG-KMGKKMQKANKLGAHYALILGGNEVTNKTVTVKNFTTGEQKEI 448

Query: 430 SLEEVINY 437
           +  E+  Y
Sbjct: 449 TRAELQTY 456


>gi|307710165|ref|ZP_07646609.1| histidyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619145|gb|EFN98277.1| histidyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 426

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 140/446 (31%), Gaps = 61/446 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +             RG++     IF F     G   ++     
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +G+  P   A   + +  +    
Sbjct: 288 YDGLVSYFGGPETAGFG-FGLGVERLLLIL-----EKQGVALPIENA-LDVYIAVLGQGA 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            V      ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +
Sbjct: 341 NV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVTV 397

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K+  T     +SL+ +    S  F  
Sbjct: 398 KNNQTREEVQVSLDAISQNFSEIFEK 423


>gi|314933737|ref|ZP_07841102.1| glycine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653887|gb|EFS17644.1| glycine--tRNA ligase [Staphylococcus caprae C87]
          Length = 463

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 124/368 (33%), Gaps = 76/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   +++  +S  + LPF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E                                       
Sbjct: 214 FIFRTREFEQMELEFFCKPGEEI------------------------------------- 236

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E+     T     F S+   D  I  EN    D  +                D+  +  
Sbjct: 237 -EWQNFWKT-----FASQWLKDLNINEENMRLRDHDADELSHYSNATT-----DIEYKFP 285

Query: 268 FDSLPENKRVSARGIEVG-HIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVV 325
           F         S    ++  H  + G  +       +   +  + +        +GA RV 
Sbjct: 286 FGWGELWGIASRTDFDLQKHSEHSGEDF------KYHDPETNEKYVPYCIEPSLGADRVT 339

Query: 326 AAVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            A +  +++ +G          + +  ++AP+K +++ +            KI+ +LS+ 
Sbjct: 340 LAFLCDAYEEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---LSSEAIKIFEQLSQS 396

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              + +D+  + IG ++   D +G P  +      + D++V ++ R +  +  M + E+ 
Sbjct: 397 -FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISELE 454

Query: 436 NYASHRFS 443
            + + +  
Sbjct: 455 TFFAEKVK 462


>gi|134046820|ref|YP_001098305.1| histidyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|166228581|sp|A4G0V7|SYH_METM5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|132664445|gb|ABO36091.1| histidyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 418

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 138/431 (32%), Gaps = 38/431 (8%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDS 88
            ++ Q  KG   +LP   K    +   +R+  +     E++ PT +S +L   ++G  D 
Sbjct: 1   MLMFQKPKGTRDFLPEEMKKRKVIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG--DE 58

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
              ++    D  ++ M   P     +   + +  K+    P   Y     FR E  P+ G
Sbjct: 59  IRTQLFVFKDHGNREMGLRPELTSSVARFYINEFKNT-PKPVKLYYFTNCFRYE-NPQAG 116

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKM-FVSYLRIFHRLGLK-----SIPMRAESGPI 202
             R REF    +         +      M       I     +       +    E   +
Sbjct: 117 --RYREFWQMGSELIGSKKPIADAEVINMAIDGLKEINMDFEINIGHLGVLKGVFEKYDL 174

Query: 203 GGDLSHEFIVLADTGETQVF------CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             D   E   L D  + +           +             +       I +      
Sbjct: 175 SDDEGTEIRRLIDKEDMEGLKTVLSRIESEKNIEISKKVFEVLELKGGREVISKLKEKLA 234

Query: 257 AATSDVHNEKLFDS---LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
              S V   +  DS      ++ +   GI  G  +Y G  +       +   +G      
Sbjct: 235 EFESSVEALENLDSILEFVPHEYIINFGIARGLDYYTGMVFE-----IYGKREGARQVCG 289

Query: 314 MGSYGIGAMRVVAA----VIESSHDGKGIIWPDSVAPFKI----SLINIKAHDQVCRDAC 365
            G Y    + +        +  ++    I+   ++  F++      +       +  + C
Sbjct: 290 GGRYD-NLIELFEGEPSPAVGFAYGFDRIML--NIDDFQVEEEAIFVVPVKSSDMLLNEC 346

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            KI   L   G  V  D MG ++      A+  G    +IVG   +S+ KV +K+  TG 
Sbjct: 347 FKIAKTLRDAGKSVELDLMGRKLNKALNYANNKGIKKVLIVGENDISEGKVALKNMETGE 406

Query: 426 REDMSLEEVIN 436
           +  + L +++ 
Sbjct: 407 QSLIELNDILT 417


>gi|294790521|ref|ZP_06755679.1| glycine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458418|gb|EFG26771.1| glycine--tRNA ligase [Scardovia inopinata F0304]
          Length = 494

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 154/474 (32%), Gaps = 74/474 (15%)

Query: 24  KLMLRTGMIHQHS--KG----IYSWLPLGQKALDNVN-AIIREEQNRTG-AIEMSVPTLQ 75
           +L  R G +       G     + + PLG    DN+     R      G  + +    + 
Sbjct: 28  QLAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKHEWWRSMVTTRGDVVGVDTSVIL 87

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQ 134
            + +WV SG    +      L +  +    +   H E   +    H +    +       
Sbjct: 88  PSQVWVASGHVTVFND---PLVECLNCHKRFRADHLEEHFE--AKHGRKPEGMSDIPCPD 142

Query: 135 IQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHR----- 187
                +  E R    ++R+    ++D  S   L PE ++     +FV +  +        
Sbjct: 143 CGTVGKWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQ----GIFVDFAEVLTTSRQKP 198

Query: 188 -LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G+ +         +G    +E         T+ F   +   F  P E+ D+       
Sbjct: 199 PFGIAN---------MGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEDWHQYWIDA 249

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TK 293
                        +    E   +   +    S R +++ + F F              T 
Sbjct: 250 RRQWYVDLGVNPDNLRLYEHPKE---KLSHYSKRTVDIEYKFGFQGSDWGELEGIANRTD 306

Query: 294 YSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------- 337
           Y L   +   G D        G+ +   +     G  R + A +  ++D           
Sbjct: 307 YDLSAHSRHSGKDLSYFDQASGERYTPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGV 366

Query: 338 -----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                +     +AP K +++ +    Q+       +   L +   DV +D+ G  IG ++
Sbjct: 367 DTRTVLRLDPRLAPVKAAVLPLSKKPQLQT-IAHNLADELREDDWDVDYDEAGA-IGRRY 424

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              D +G PL V V    + D  V I+ R T  ++ ++L++V +Y      + R
Sbjct: 425 RRQDEIGTPLCVTVDFDTLDDQAVTIRERDTMKQDRVALDQVASYVGSFIKDKR 478


>gi|257888112|ref|ZP_05667765.1| seryl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257824166|gb|EEV51098.1| seryl-tRNA synthetase [Enterococcus faecium 1,141,733]
          Length = 423

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTADAEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYAH 379


>gi|301062985|ref|ZP_07203550.1| histidine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300442866|gb|EFK07066.1| histidine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 417

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 138/434 (31%), Gaps = 51/434 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP        +    R   +  G  E+  P L++  L+        D   KEM 
Sbjct: 7   KGFKDILPEESARWQEIETKARHLLSAFGYQEIRTPVLENTALFSRGIGQETDIVSKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVMRSR 153
              D   + +   P     +   +  H + Y+N P    Y I   FR E RP+ G  R R
Sbjct: 67  SFEDVKGRGLTMRPEATASVVRAYVQH-RLYQNYPIQKLYAIGPMFRHE-RPQKG--RFR 122

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--------------------KSI 193
           +F   D   F      S      M    +  F  +GL                      +
Sbjct: 123 QFHQIDVEFFGDPGPISDAE---MISLAMHFFEAIGLRELTLHINSLGCPDCQPEFKDHL 179

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +         DL  +  + A     +VF  K      I          +  N      +
Sbjct: 180 KVYLADRA--SDLCPDCQIRAQINPLRVFDCKVETCKSIVQNAPTIPAFLCGNCRDHFDS 237

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARG-IEVGHIFYFGTKYSLPMSATFKGA----DGK 308
                     + ++ D L        R   E+    + G + ++     + G      G 
Sbjct: 238 LKAHLDGLNISFEMNDLLVRGLDYYNRTTFEIQT-EHLGAQNAVAGGGRYDGLVKTLGGP 296

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           DH     + G+     V A++E+S         +S+ P +  L  I A     R    + 
Sbjct: 297 DHPAIGFAVGV---ERVVALLEAS---------ESLEPRRPELF-IAALGSKVRLLTFQW 343

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K G  V  D  G+ + SQ   A  LG    +IVG   V+  K  +++  T  + D
Sbjct: 344 TTALRKQGIWVELDYGGKGLKSQMKKAGRLGARNVLIVGDDEVAAKKAILRNMETREQMD 403

Query: 429 MSLEEVINYASHRF 442
           +  E +I+      
Sbjct: 404 IDFETLISTLKEML 417


>gi|227550622|ref|ZP_03980671.1| serine--tRNA ligase [Enterococcus faecium TX1330]
 gi|227180246|gb|EEI61218.1| serine--tRNA ligase [Enterococcus faecium TX1330]
          Length = 422

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTADAEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYAH 379


>gi|89897924|ref|YP_515034.1| seryl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123483891|sp|Q255Z9|SYS_CHLFF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|89331296|dbj|BAE80889.1| seryl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 426

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 10/223 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   + ++Q   G      P L   ++   SG+   +  +  R
Sbjct: 159 GSGWPAYKNRGVLLEWALLTYLLQKQQSHGFQLWLPPLLVKREILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D  D+++   PT E V+       I + ++LP  +      FR E         G++R
Sbjct: 219 VED-GDQSLYLIPTAEVVLNGFHSQEIFNEKDLPIYYAACTPCFRREAGAAGAHERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   + ++F  TPE +  +Y KM      I   L L        +G +    S    
Sbjct: 278 VHQFHKVEMFAF-TTPEQADQAYEKMLSIVEEILTELKLPYRLSLLSTGDMSFTASKTID 336

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            E  +       +V       DF      T + D       V 
Sbjct: 337 AEVWLPGQKSYYEVSSISQCTDFQSRRSETRYKDSQGKMHFVH 379


>gi|71894601|ref|YP_278709.1| seryl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|71851389|gb|AAZ43998.1| seryl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 421

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 19/254 (7%)

Query: 14  NPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
             +D E   +++     MI       Q       +   G K +  +   + +   + G  
Sbjct: 131 TKKDFEKPHYEIASELNMIDIPRAVKQSGSRFVIYKNEGSKLVRALINFMLDLHKQKGYD 190

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E   P L  +++   +G+   + ++M ++    +  +   PT E  +T+ + + I +  +
Sbjct: 191 EFLTPYLVRSEMLFGTGQLPKFKEDMFKV---ENSDLYLIPTAEITLTNYYNNEIVN-LD 246

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            PF        FR E+    +   G++R  +F   +      T + +   +N M      
Sbjct: 247 KPFKACAYTECFRSEVGSSGKDTKGIIRQHQFKKVEIVKV-TTKDDAIKEFNLMLEDAKN 305

Query: 184 IFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +  +L +    +   +G +G      +  E  + +++   +V       DF        +
Sbjct: 306 VLFKLEIPFREVLLSTGDMGFSSRKTIDLELWLPSESKYREVSSVSYMGDFQARRAKIRY 365

Query: 240 DDIISLNSIVEQWT 253
            +            
Sbjct: 366 KNQDQKTEYAHTMN 379


>gi|309388965|gb|ADO76845.1| histidyl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 424

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/438 (15%), Positives = 141/438 (32%), Gaps = 39/438 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDS 88
           M  +  +G    LP        +     E  +     E+  P  +  +L+    G   D 
Sbjct: 1   MKFKAPRGTNDILPPATLKWQYIEEKTHEVFSNYNYHEIRTPIFEYTELFQRGIGEVTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P     +   F  +    +  P  +Y I   FR E RP+ G
Sbjct: 61  VEKEMYTFEDKGGRSLTLRPEGTASVIRSFLENKIYGQAQPTKYYYIGPMFRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F      +              +    +R+  + GL  + +   S       P 
Sbjct: 120 --RFRQFHQLGVEAIASNDPALDAE---IISLGIRLLQKFGLNELELNLNSVGCQECRPD 174

Query: 203 GGDLSHEFIV-----LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                 E++      L D  ++++  S   +            +     +     +    
Sbjct: 175 YVAKLKEYLTKNKEQLCDNCKSRIERSPLRVLDCKNKNCQSVINSAPKITENLCSSCDEH 234

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKG---ADG 307
                    + +   +   +  RG++      F       G + ++     + G     G
Sbjct: 235 FKEVQSYLDILEIDYQINPLLVRGLDYYTNTAFEIKDNALGAQDTIFGGGRYNGLAEEIG 294

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +G + +G  R++ ++     + K I  P   A   + +  I A     +    K
Sbjct: 295 NRDVPGIG-FALGIERLLLSL-----EAKDIKLPVE-AGVDLYITVIGAK---AKRESFK 344

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L   G     D +   +GSQ   AD +     +I+G   ++ +   I++  +G  +
Sbjct: 345 LLDKLRSSGFKTEMDYLDRGVGSQMKSADRMNAEYTIIIGEDELNKNAATIRNMKSGTEK 404

Query: 428 DMSLEEVINYASHRFSNN 445
           ++ L  ++       +  
Sbjct: 405 EIKLTNLLEEMKQLVAKE 422


>gi|294619786|ref|ZP_06699182.1| seryl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291593970|gb|EFF25448.1| seryl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 422

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNYYNDEILDGADLPIYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTADAEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYAH 379


>gi|257885573|ref|ZP_05665226.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|261206902|ref|ZP_05921591.1| seryl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289567404|ref|ZP_06447770.1| seryl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|293557178|ref|ZP_06675729.1| seryl-tRNA synthetase [Enterococcus faecium E1039]
 gi|294614525|ref|ZP_06694437.1| seryl-tRNA synthetase [Enterococcus faecium E1636]
 gi|257821429|gb|EEV48559.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|260078530|gb|EEW66232.1| seryl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289160800|gb|EFD08734.1| seryl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592618|gb|EFF24215.1| seryl-tRNA synthetase [Enterococcus faecium E1636]
 gi|291600659|gb|EFF30960.1| seryl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 423

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNYYNDEILDGADLPIYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTADAEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYAH 379


>gi|148990507|ref|ZP_01821648.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147924265|gb|EDK75361.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 426

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENVPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|289167022|ref|YP_003445289.1| histidyl-tRNA synthetase [Streptococcus mitis B6]
 gi|288906587|emb|CBJ21420.1| histidyl-tRNA synthetase [Streptococcus mitis B6]
          Length = 429

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 140/446 (31%), Gaps = 61/446 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +             RG++     IF F     G   ++     
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +G+  P   A   + +  +    
Sbjct: 288 YDGLVSYFGGPETAGFG-FGLGVERLLLIL-----EKQGVALPIENA-LDVYIAVLGDGA 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            V      ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +
Sbjct: 341 NV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVTV 397

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K+  T     +SLE +    S  F  
Sbjct: 398 KNNQTREEVQVSLEAISQNFSEIFEK 423


>gi|257896269|ref|ZP_05675922.1| seryl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293379350|ref|ZP_06625494.1| serine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|257832834|gb|EEV59255.1| seryl-tRNA synthetase [Enterococcus faecium Com12]
 gi|292641873|gb|EFF60039.1| serine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 423

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTADAEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYAH 379


>gi|300934550|ref|ZP_07149806.1| histidyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 428

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/440 (13%), Positives = 127/440 (28%), Gaps = 57/440 (12%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  + P        +        ++ G   + +P  +  +L+        D   KE
Sbjct: 15  APKGVQEYFPPNSHEFLAIREAFTRAAHQAGYEHIELPIFEDTNLFARGVGESTDVVSKE 74

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 75  MYTFADRGGRSVTLRPEGTAGVIRSVIEHNLDRGQLPVKLVYAGPFFRYE-RPQAG--RY 131

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGDL 206
           R+       +  +           +     R +  +GL    +           P     
Sbjct: 132 RQLQQVGVEAVGVDDPYLDAE---VIALADRCYRTVGLTGQRLELTSLGDGSDRPAYRAK 188

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+      E     +       +  +  +  D+++   ++    +  +         
Sbjct: 189 LQEFLHTLPLDEETARRADLNPLRVLDDKRPEMQDMLADAPLMLDHLSDSSHEHFETVTG 248

Query: 267 LFD---SLPENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
           + D             RG++              G +  +     + G  A      +  
Sbjct: 249 MLDDLGVEYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSG 308

Query: 315 GSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +G+G  R + A+  E                 ++ +  +    +       ++   L 
Sbjct: 309 IGFGLGVDRTLLALQAEGKSASD---------ARRVDVYGVALGSEAKSRMA-RLVNELR 358

Query: 374 KVGCDVF--WDDMG--------EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             G  V   + D G        ++ G++FA          +++G   +    V +K    
Sbjct: 359 AAGISVDMSYGDRGLKGAMKGADRAGAKFA----------LVMGESELEAGNVALKDLAA 408

Query: 424 GIREDMSLEEVINYASHRFS 443
             + +++L+ V+   S+   
Sbjct: 409 HEQRNIALDAVVAELSNTLQ 428


>gi|297531631|ref|YP_003672906.1| glycyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297254883|gb|ADI28329.1| glycyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 460

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 117/357 (32%), Gaps = 55/357 (15%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++      + LPF   QI   FR+E+ P  
Sbjct: 152 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E  +      ++ Y + F +  L S+ M+ ++  +     
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELQ------WLEYWKQFCKEWLLSLGMKEDNIRLRDHAK 265

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        +     FP            +   +             +  E  
Sbjct: 266 EELSHYSN------ATTDIEYHFPFGWGELWGIASRTDYDLKRHMEYSGEDFHYLDQETN 319

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              +P     S            G  + +L         +  +          G  R V 
Sbjct: 320 ERYIPYCIEPS-----------LGADRVTLAFMIDAYDEEELED---------GTTRTVM 359

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +              ++AP+K +++ +        D   +IY  L+K    V +D+ G 
Sbjct: 360 HL------------HPALAPYKAAVLPLSKK---LADGARRIYEELAKH-FMVDYDETG- 402

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  +    +   D +V ++ R T  +  + + E+  +   + +
Sbjct: 403 SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQVRLPIGELKAFLEEKIA 459


>gi|68536122|ref|YP_250827.1| histidyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|83305865|sp|Q4JVE8|SYH_CORJK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|68263721|emb|CAI37209.1| hisS [Corynebacterium jeikeium K411]
          Length = 443

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 132/435 (30%), Gaps = 43/435 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V        +  G   + +P  +   L+        D   KE
Sbjct: 24  APKGVPDYVPPTSAEFKAVKDAFTSAAHAAGYEHVELPIFEETSLFARGVGESTDVVSKE 83

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 84  MYTFADRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLVYNGPFFRYE-RPQAG--RY 140

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGDL 206
           R+       +  +           +     R F  +GL    +        +  P     
Sbjct: 141 RQLQQVGVEAIGVDDPALDAE---VIALAHRCFSSIGLNGFRLELTSLGDWDDRPAYRQK 197

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+      E     ++      +  +  +  ++++   ++    +  +         
Sbjct: 198 LQDFLATLPLDEETQRRAQLNPLRVLDDKRPEMQEMLAEAPLMLDHLSDSSREHFETVTG 257

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
           L D L     ++ R             E  H    G +  +     + G  A      + 
Sbjct: 258 LLDDLGVGYTINPRMVRGLDYYTKTCFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQDLS 316

Query: 314 MGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              +G+G  R + A+  E      G           + +  +    +  R     I   L
Sbjct: 317 GIGFGLGVDRALLALEAEEKRASTGRR---------VDVYGVALGAEAKRRMV-GIVDDL 366

Query: 373 SKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            + G      + + G + G+    AD  G    +++G K +++  V +K      + ++ 
Sbjct: 367 RERGVSADMSYGNRGLK-GAM-KGADRAGALYALVLGDKELAEGTVTVKDLGAHEQHEVD 424

Query: 431 LEEVINYASHRFSNN 445
           L  V+   + + ++ 
Sbjct: 425 LAAVVELLAEKTADR 439


>gi|37525333|ref|NP_928677.1| histidyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|39932035|sp|Q7N705|SYH_PHOLL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|36784760|emb|CAE13670.1| histidine-tRNA ligase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 425

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 144/444 (32%), Gaps = 58/444 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  I++      G  E+  P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTVIWQRIETILKRVLAGYGYSEIRTPIVEQTPLFRRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P +          H   Y      +Y +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESVTLRPENTAGCVRAGIEHGLLYNQEQRVWY-LGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFYQLGAEVFGLQGPDIDAE---LILLTARWWRELGI-FEHVTLELNSIGSLAARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLF 268
             A     +    K   D      +     + S N  V+Q            D  +++ F
Sbjct: 178 REALVAFLEQHQDKLDEDCKRRMYSNPLRVLDSKNPEVQQLLNDAPELCDYLDAESKEHF 237

Query: 269 DSLP----------ENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKD 309
           D L              +   RG++     +F       G + ++     + G       
Sbjct: 238 DGLCALLDGAGIKYRINQRLVRGLDYYNRTVFEWVTTALGAQGTVCAGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R++  V E +        P  VA   ++ + + +  +  + A   + 
Sbjct: 298 RPTPAVGFAMGMERLILLVQEIN--------PAFVAERTVADVYLASFGEGSQQAALILA 349

Query: 370 ARLSKVGCDVFWDDM----------GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            ++     D                 +Q+G     AD  G  + +I+G   V   +V IK
Sbjct: 350 EQVR----DTLPQLRLMMNHGGGNFKKQLGR----ADKQGAKIALILGEDEVRSGQVAIK 401

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
              TG ++ +   E+        S
Sbjct: 402 DLRTGEQQTLPQSEIAARLVELLS 425


>gi|322807844|emb|CBZ05419.1| glycyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 463

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 119/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N            LG+    +R        D S
Sbjct: 215 FTFRTREFEQMELE-FFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRF------RDHS 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                         E + + +  S    +  +            +  
Sbjct: 268 QE-------------------------ELSHYSNATSDIEFLFPFGWGELWGVADRTDFD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E+                           +     K+ Y        +GA RVV 
Sbjct: 303 LKKHMEHSGE---------------------DLNYLDPATKERYVPYCIEPSLGADRVVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        D  +++Y+ L K   
Sbjct: 342 AFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LSDKSQEVYSMLRKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R T  +  +S+ E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRDTMNQIRVSINELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEDKLE 462


>gi|256826794|ref|YP_003150753.1| seryl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
 gi|256582937|gb|ACU94071.1| seryl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
          Length = 427

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 12/216 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P L + +    +G+   + +++ +  D   +++
Sbjct: 170 LGARLERALINFMADTHTSRGFKEWWCPALVNRETMTGTGQLPKFEEDLFKTKD---ESL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +     LP  +      FR+E     R   G++R  +F   + 
Sbjct: 227 YLIPTAEVTLTNIHAGEVLDAAELPLRYTAFTPCFREEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE +      M      I  +L L    +   +G +G   +     E  + +  
Sbjct: 287 VKF-AKPEEAYDELESMTAEAEYILQKLELPYRVISLCTGDLGFSAAKTYDLEVWLPSYD 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              ++       DF     +  + D  S       +
Sbjct: 346 AYKEISSCSCCGDFQARRADIKYRDAESFKGTRYVY 381


>gi|147676348|ref|YP_001210563.1| seryl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|189083576|sp|A5D6D5|SYS_PELTS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|146272445|dbj|BAF58194.1| seryl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 422

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 9/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +   G +    V   + +      G +E+  P + + D  V +G+   + ++M +L   
Sbjct: 164 FYKGYGARLERAVINFMLDLHTAEHGYVEIFPPFIVNRDSMVGTGQLPKFAEDMFKL--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R+ I     LP         FR E     R   G++R  +F
Sbjct: 221 EGAEYYLIPTAEVPVTNLYRNEILDGEKLPILHCAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +   F   PE S     K+     ++  +LGL    +   +G +G   +  +
Sbjct: 281 NKVELVKF-CRPEDSYDELEKLTADAEKVLQKLGLPYRVVVLCTGDLGFSAAKTY 334


>gi|84999162|ref|XP_954302.1| glycyl-tRNA synthetase  [Theileria annulata strain Ankara]
 gi|65305300|emb|CAI73625.1| glycyl-trna synthetase, putative [Theileria annulata]
          Length = 796

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 136/400 (34%), Gaps = 83/400 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +PF   QI L FR+E+ PR G++R REF M +   F      +   + +   + L +  R
Sbjct: 380 IPFAAAQIGLGFRNEISPRNGLLRVREFPMAEIEYFVNPKFKTHEKFPEFKNTVLPLLTR 439

Query: 188 L-----GLKSIPM----RAESGPIGGDLSHEFIVLAD-------------------TGET 219
                   + I +       SG +G +    F+                         E 
Sbjct: 440 DQQTNDNFEPIHISMSEAVSSGIVGNEALAYFLARTFLFLKRVGINEAGLRFRQHMANEM 499

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             + S  +    + S         +     +      +  S +     +D+  + ++V  
Sbjct: 500 AHYASDCWDAEILTSYGWVEVVGHADRMAYDLMCHSKSTNSQLVAHHRYDNPIQVEKVLV 559

Query: 280 R--GIEVGHIFYFGTK------------YSLPMSATFKGA--------DGKDH------- 310
           +    E+G  F    K             S  +    +          DGK+        
Sbjct: 560 KCNKPEIGKAFKSDQKILLNHLNNLTLQQSKELHERLENNTDGCVVSVDGKEFLLKKSMV 619

Query: 311 --------------YVQMGSYGIGAMRVVAAVIESSH-----------DGKGIIWPDSVA 345
                            +     G  R++ +++E S+           + K +    S+A
Sbjct: 620 SFEYVNVNVCDETFVPCVIEPSFGLGRLIFSILEHSYRVRPVDVNVPEERKYVALNKSIA 679

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P K S++ + +  +V      ++ A L ++G     D  G  IG ++A  D +G P  V 
Sbjct: 680 PTKCSVLPLSSK-EVFEPLITRVQAHLRRLGISHKVDKTGASIGKRYARTDEIGIPFCVT 738

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +  + V+D  V ++ R T  +  + L+++    ++   ++
Sbjct: 739 LDFQSVNDDTVTLRERDTMQQVRIKLDDLGELINNLLKDD 778



 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYG 90
           I+  S G++ + P G      +  + RE        +E+S   +    +   SG  D + 
Sbjct: 174 IYGGSAGLFDFGPPGCALKSELERLWREHFVVFDEMLEVSCTCITPHPVLKSSGHVDRFT 233

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY----RNLPFTFYQIQLKFRD--ELR 144
             M++     D         E+++++I ++  +S      ++  T   ++ K     E  
Sbjct: 234 DLMVKNLSNGDCYRADK-YLEDLISNIIQNKSQSNLNNSNDVGITNKNLKTKLNSKLEKM 292

Query: 145 PRFGVMRSRE----FLMKDAYSFDLTPE 168
               +MR RE    +   +   F +  E
Sbjct: 293 TLEELMRLRERVGTYNQDEMERFYMENE 320


>gi|257899256|ref|ZP_05678909.1| seryl-tRNA synthetase [Enterococcus faecium Com15]
 gi|257837168|gb|EEV62242.1| seryl-tRNA synthetase [Enterococcus faecium Com15]
          Length = 423

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTADAEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYAH 379


>gi|256848554|ref|ZP_05553995.1| seryl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714606|gb|EEU29586.1| seryl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 435

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 12/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +A     +G++  + + + ++  
Sbjct: 163 FVYYLGLGAQLERAVYNFMLDEHMKDGYTEVLPPYIVNAKSMYGTGQFPKFKEGVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +   + LP     +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRGDVIPEQELPVYVTALTPCFRSEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S     KM  +   I  +LGL    +   S  +    S     E 
Sbjct: 280 FNKVEMVKY-TKPEDSWDELEKMTANAENILKKLGLPYHVITLTSSDMSFTASMTHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            + A     +V    + +DF     +T + D       V 
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRMHTQYRDADGKLHYVH 378


>gi|225387782|ref|ZP_03757546.1| hypothetical protein CLOSTASPAR_01552 [Clostridium asparagiforme
           DSM 15981]
 gi|225046116|gb|EEG56362.1| hypothetical protein CLOSTASPAR_01552 [Clostridium asparagiforme
           DSM 15981]
          Length = 462

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 116/365 (31%), Gaps = 73/365 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R+REF   +   F       +  +Y K F   +     LG+K   MRA         
Sbjct: 214 FTFRTREFEQMELEFFCKPGTDLEWFAYWKQFC--IDWLRTLGIKEDEMRARD------- 264

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                                     P E   +    +    +  +            + 
Sbjct: 265 ------------------------HSPEELCFYSKATTDLEFLFPFGWGELWGIADRTDY 300

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                                              F     + +   +    +GA RV  
Sbjct: 301 DLTQHQNVSGQDM--------------------TYFDDESKEKYIPYVIEPSLGADRVTL 340

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A + +++D + +          +  ++AP KI ++ +        +  EK++A LSK   
Sbjct: 341 AFLCAAYDEEELAEGDVRTVLRFHPAIAPVKIGILPLSKK---LNEGAEKVFAELSKY-Y 396

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +  +DD G  IG ++   D +G P  +        D  V ++ R T  +  + + E+  Y
Sbjct: 397 NCEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSEEDHAVTVRDRDTMDQVRVPIAELRTY 455

Query: 438 ASHRF 442
            + +F
Sbjct: 456 FADKF 460


>gi|319442155|ref|ZP_07991311.1| histidyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 432

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 129/431 (29%), Gaps = 49/431 (11%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V +      + +G   + +P  +   L+        D   KE
Sbjct: 15  APKGVPDYVPPASVDFHAVRSTFETVIHNSGYGHIELPVFEETALFARGVGESTDVVSKE 74

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 75  MYTFEDRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLTYSGPFFRYE-RPQAG--RY 131

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R F  LGL    +   S       P     
Sbjct: 132 RQLQQVGVEAVGVDDPALDAE---VVGLADRCFRALGLTGYRLELTSLGDDNCRPAYRKT 188

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+      E     ++      +  +  +  +++    ++                 
Sbjct: 189 LQDFLFALPLDEETRKRAEINPLRVLDDKRPEVQEMLVDAPLMPDHLCDNCREHFETVTG 248

Query: 267 LFDSLPEN---KRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQM 314
           L D +           RG++              G +  +     + G  A      +  
Sbjct: 249 LLDDMGVEYVLNPRLVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSG 308

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-----FKISLINIKAHDQVCRDACEKIY 369
             +G+G  R V A+               V P       +  + +    +        I 
Sbjct: 309 IGFGLGVDRTVLALAAE-----------GVTPTSGRRVDVYGVPMGVDAKKKLAV---II 354

Query: 370 ARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +L + G      + D G + G+    AD  G    +++G + ++D  V ++   +  + 
Sbjct: 355 DKLRRAGVSADMSYGDRGLK-GAM-KGADRAGARFALVLGEQELADGTVVLRDLSSRDQH 412

Query: 428 DMSLEEVINYA 438
           +++L++VI   
Sbjct: 413 EVALQDVIEAV 423


>gi|293572385|ref|ZP_06683367.1| seryl-tRNA synthetase [Enterococcus faecium E980]
 gi|291607545|gb|EFF36885.1| seryl-tRNA synthetase [Enterococcus faecium E980]
          Length = 423

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTADAEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYAH 379


>gi|293364647|ref|ZP_06611368.1| histidine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307702905|ref|ZP_07639853.1| histidyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316905|gb|EFE57337.1| histidine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623585|gb|EFO02574.1| histidyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 426

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 141/444 (31%), Gaps = 57/444 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D           DF D  S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDAESQ 234

Query: 246 NSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSA 300
                              D +  +  D            IE   +    G +Y   + A
Sbjct: 235 AHFDAVRQMLENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGRY-DGLVA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G +          +G+G  R++  +     + +G+  P   A   + +  +    + 
Sbjct: 294 YFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVSLPIENA-LDVYIAVLG---EG 339

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +K+
Sbjct: 340 ANVKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVTVKN 399

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             T     +SLE +    S  F  
Sbjct: 400 NQTREEVQVSLETISQNFSEIFEK 423


>gi|217316833|gb|ACK37822.1| putative glutamyl-prolyl tRNA synthetase [Euastacus robertsi]
          Length = 134

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGLT-TRTIGVMVMVHGDDK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +               DAC K+ A L+  G     D   
Sbjct: 74  GLVLPPRVASVQAIIMPVGITAKSSEQDKSNLMDACNKLAADLNAAGVRARCDLRD 129


>gi|56965072|ref|YP_176804.1| histidyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|81678761|sp|Q5WCR7|SYH2_BACSK RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|56911316|dbj|BAD65843.1| histidyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 425

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 137/444 (30%), Gaps = 69/444 (15%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGK 91
           +Q+ +G   +LP  +     +   + E   + G   M  P +   DL   + G      K
Sbjct: 6   YQNVRGTQDYLPEDESVRVWLRRELEEVFQQYGCKPMETPMINYTDLLASKYGGGAEIKK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM  L DR  +A+            +   +    +  PF  Y+I   FRD         R
Sbjct: 66  EMYTLTDRGKRALALRYDLTIPFAKVMAMNPDIRK--PFKRYEIGKVFRD---GPIKAGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-------------------- 191
            REF   D     +    ++    +M      +F R+GL                     
Sbjct: 121 FREFTQCDVDVAGVDSPLAEAELLEMA---TEVFRRIGLNMTIQYNNRKLLTGMLDICGV 177

Query: 192 ------SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI--PSENTDFDDII 243
                 ++ +  +     GD       L + G      SK          S   DF    
Sbjct: 178 SKDQHSAVILILDKREKIGDKQV-VNELKEMGVDGKAISKIAQWLKQMSQSGIVDFATDR 236

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF----------- 290
               I+ +  A      +       DS        ARG+E+  G ++             
Sbjct: 237 PTTPIMAEGIAELQELEEALRYLNIDSQCTFNPFLARGLEIYTGTVYELFLTEGAIQSSV 296

Query: 291 --GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G +Y   +S    G  G++  +       G   +  A+       +  +    V P +
Sbjct: 297 GSGGRYDQAIS----GLTGEEQPMPTVGISFGIDVIYTALKMEGRINQKPLLDYYVIPLQ 352

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                        ++    + + L K G  V  +   +++      A+    P  +++G 
Sbjct: 353 -----------KQKE-ALAVASSLRKQGFRVDVEFKNKKLTKALDRANKEKIPFVILIGE 400

Query: 409 KFVSDSKVEIKHRLTGIREDMSLE 432
           + V+  + ++K+  TG  + +   
Sbjct: 401 EEVASGRYKLKNMETGAEQHVPFS 424


>gi|332975402|gb|EGK12296.1| histidine--tRNA ligase [Desmospora sp. 8437]
          Length = 398

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 125/405 (30%), Gaps = 29/405 (7%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHE 111
               RE        E+  P  +  +L+        D   KEM    DR  +++   P   
Sbjct: 1   EEKARELCRLYHFSEIRTPLFEQTELFRRGVGETTDIVEKEMYTFEDRGGRSLTLRPEGT 60

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
             +   F  +       P   Y +   FR E RP+ G  R R+F       F        
Sbjct: 61  APVVRSFVENKMYAGPQPTKLYYMGPMFRYE-RPQAG--RQRQFHQFGVEVFGTREPEVD 117

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQVFCSK 225
                +     R +  +GL+ + +   S       P+  +   +F+        ++    
Sbjct: 118 AE---IIDLGYRFYTAVGLRKVRVELNSVGCPRCRPVHREALVKFLTPH---REELCKDC 171

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                  P    D  +        +          D      FD++ EN  +     EV 
Sbjct: 172 QSRLERNPMRVLDCKNETCSRLTEDAPKMLQFLCDDC--APHFDTVKENLDLLEVPYEVN 229

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                G  Y    +  +   + +   +  G    G +  V    +    G G+     + 
Sbjct: 230 PRLVRGLDYYTQTAFEYLLEEAEGGSLGGGGRYNGLVEEVGGPADMPGIGFGLGLERVIL 289

Query: 346 PFKISLINIKAHD----------QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             K   +N                  +     +  +L + G     D +  ++ +Q   A
Sbjct: 290 ALKQQEVNPPIRRGVDCFLVTLGAATKKRGVSLLKQLREAGLSAERDYLDRKLKAQLKAA 349

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D  G     I+G   + + ++ +K+  TG +E + L+++ +Y  H
Sbjct: 350 DRSGAAYVAILGEDELEEDRIVVKNLSTGEQETIQLDQLTDYIRH 394


>gi|170017957|ref|YP_001728876.1| seryl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|238688940|sp|B1MW28|SYS_LEUCK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169804814|gb|ACA83432.1| seryl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 436

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 8/172 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R+         
Sbjct: 179 GARLERAVYNFMLDEHRQEGYTEMITPIVVNDAAMFGTGQYPKFQDDAYRV---EGLEQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYSGETLPAEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   PE S      M  +   I  +LGL    +   +G +G   +  + V 
Sbjct: 296 KF-TKPEQSYEELESMTANAENILQKLGLPYHVIMLSTGDMGFSAAKTYDVE 346


>gi|166077834|gb|ABY81011.1| glutamyl-prolyl tRNA synthetase [Mysis segerstralei]
          Length = 145

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSH 333
             S R I+     + G  +S     TF+      K  +V   S+GI   R +  ++    
Sbjct: 20  MASGRAIQGATSHHLGQNFSKMFDITFEDPKCGDKKQFVYQNSWGIT-TRTIGVMVMVHG 78

Query: 334 DGKGIIWPDSVAPFKISLINI-----KAHDQV--CRDACEKIYARLSKVGCDVFWDDMGE 386
           D  G++ P  VA     ++ +        D+     +A +K+   L+        D    
Sbjct: 79  DDTGLVLPPKVAAIHCIIVPVGITAKTTEDERLSLLEAAKKLQVELTAADIRAKCDIRDN 138

Query: 387 -QIGSQF 392
                +F
Sbjct: 139 VTPAWKF 145


>gi|170754288|ref|YP_001783158.1| glycyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|169119500|gb|ACA43336.1| glycyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 463

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 120/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N            LG+    +R        D S
Sbjct: 215 FTFRTREFEQMELE-FFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRF------RDHS 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                         E + + +  S    +  +            +  
Sbjct: 268 QE-------------------------ELSHYSNATSDIEFLFPFGWGELWGVADRTDFD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E+                           +     K+ Y        +GA RVV 
Sbjct: 303 LKKHMEHSGE---------------------DLNYLDPATKERYVPYCIEPSLGADRVVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        D  +++Y+ LSK   
Sbjct: 342 AFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LSDKSQEVYSMLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R T  +  +S+ E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRDTMNQIRVSINELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEDKLE 462


>gi|293400671|ref|ZP_06644816.1| glycine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305697|gb|EFE46941.1| glycine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 460

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 114/365 (31%), Gaps = 70/365 (19%)

Query: 93  MLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +     L D  +   +   T + +  +         + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGILEDSKNTIYLRPETAQGMFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P      Y       ++    LG+    +R           
Sbjct: 211 FIFRTREFEQMELEFF-CQPGTDLEWYEYYKNYCMKFLTDLGVDPEHLRFRD-------- 261

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                   T E   F SK   D      +      +   +    +       +   + + 
Sbjct: 262 -------HTPEELAFYSKGTCDIEYNFHSQIGWGELWGIADRTDYDLKQHQEASKKSLEY 314

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D                                      + +        +G  R++ A
Sbjct: 315 LDPTT----------------------------------NEKYLPYCVEPAVGVERLMLA 340

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS-KVGCD 378
            +  ++D + +             +AP K  +  +        +   +++  L+    CD
Sbjct: 341 FLCDAYDEEELENDTRIVMHLHPFLAPIKACITPLSKK---LSEKGMEVFQMLAPVANCD 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  + V  +   D+ V ++ R T  +E ++L ++++Y 
Sbjct: 398 --YDDAG-SIGKRYRRNDAIGTPFCITVDFETEQDNCVTVRERDTMKQERVNLNDLVSYI 454

Query: 439 SHRFS 443
             R  
Sbjct: 455 EERIK 459


>gi|134094492|ref|YP_001099567.1| histidine tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|133738395|emb|CAL61440.1| histidine tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Herminiimonas arsenicoxydans]
          Length = 448

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 121/444 (27%), Gaps = 64/444 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDSYGKEML 94
           KG+   LP      +     +       G  ++  P ++   L+        D   KEM 
Sbjct: 14  KGMNDILPADAPLWELFENTVHTVLKSYGFQQIRTPIVEPTALFARGLGAVTDIVEKEMY 73

Query: 95  RLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N   +   P                  + P   +     FR E RP+ G  R R
Sbjct: 74  SFTDSMNGDELTLRP-ECTASVVRAALEHNLTYDGPKRLWYSGPMFRHE-RPQRG--RYR 129

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL------- 206
           +F    A +   +          M     R++  LGL+   +R E   IG          
Sbjct: 130 QFHQIGAEAIGFSGPDIDAELIMMCQ---RLWDDLGLQD--VRLELNSIGNAEERNKHRA 184

Query: 207 ----SHEFIVLADTGETQVFCSKDF------MDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 E        E Q     +        +  +         ++       +     
Sbjct: 185 DLISYFEQHAELLDAEAQKRLHSNPLRILDTKNPAMQEMVNAAPKLLDYLGEDSRAHFEG 244

Query: 257 AATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGT--------KYSLPMSATFKGA 305
                 HN   F   P          R +        G+        +Y  P+   F G 
Sbjct: 245 VQKILNHNAIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRY-DPLVEMFGG- 302

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                      + +G  R++   +  +   K         P +  +  +   +     A 
Sbjct: 303 ----KPTPACGFAMGVERLLE--LMKASGEKF-------TPNQCDVYIVHQGEPAQLQAS 349

Query: 366 EKIYARLSKVGCDVFWDDMGEQIG---SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  RL   G DV         G    +     AD  G    VI+G   ++     +K 
Sbjct: 350 V-VAERLRDAGLDVVL-HCAASAGIGSFKSQMKRADNSGAAYAVIIGEDEIAKGAAVVKE 407

Query: 421 -RL-TGIREDMSLEEVINYASHRF 442
            R   G + +++ E + +Y   + 
Sbjct: 408 MRDAEGKQSEVAFEGIADYLVDQI 431


>gi|134094256|ref|YP_001099331.1| seryl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166222732|sp|A4G3W7|SYS_HERAR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|133738159|emb|CAL61204.1| serine tRNA synthetase (Serine--tRNA ligase) (SerRS) [Herminiimonas
           arsenicoxydans]
          Length = 431

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 85/253 (33%), Gaps = 20/253 (7%)

Query: 17  DAEIASHKLMLRT-GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+    +    G    +  G  A     +   + +      G  E 
Sbjct: 133 DFEVRDHVDIGAALGLDFDVAAKITGSRFSVMKGGIARLHRALAQFMLDTHTEEHGYTEC 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             P + +AD    +G+   +  ++  +     +   +A+   PT E  +T+I R  I + 
Sbjct: 193 YTPYIVNADSLQGTGQLPKFEADLFAVKKGGQEGEGEALYLIPTAEVPLTNIVRDEILAA 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP         FR E     R   G++R  +F   +     + PE S  + ++M    
Sbjct: 253 DALPVRMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQV-VHPEKSYEALDEMCGHA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I  +LGL    +   +G +G   S     E  + A     ++    +   F       
Sbjct: 312 ENILKKLGLPYRVITLCTGDMGFGASKTYDLEVWLPAQNTYREISSVSNCEAFQARRMQA 371

Query: 238 DFDDIISLNSIVE 250
            F +      +  
Sbjct: 372 RFRNAQGKPELTH 384


>gi|78043693|ref|YP_361479.1| seryl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770534|sp|Q3A8Q5|SYS_CARHZ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|77995808|gb|ABB14707.1| seryl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 424

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 98/289 (33%), Gaps = 36/289 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG      V   + +      G +E+  P + +AD  + +G+   + ++M +L   
Sbjct: 164 FYKGLGAMLERAVINFMLDLHTREHGYVEVFPPFIVNADSMMGTGQLPKFAEDMFKLEGL 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           N       PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 224 N---YYLIPTAEVPVTNLYREEILDGDKLPIYHCAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F + PE S     K+     R+   LGL    +   +G +G          A 
Sbjct: 281 NKVELVKF-VKPENSYEELEKLTRDAERVLQLLGLPYRVVVLCTGDLGFS--------AA 331

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      + D+   S  ++F+D  +  + +     P A    VH            
Sbjct: 332 KTYDIEVWLPSYNDYKEISSCSNFEDFQARRAKIRYKEHPKAKPEFVHTLNG-------- 383

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                G+ VG            +   ++  DG     ++    +G  R+
Sbjct: 384 ----SGLAVGRT-------VAAILENYQNEDGSVTVPEVLRPYMGVDRI 421


>gi|315640401|ref|ZP_07895513.1| serine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483839|gb|EFU74323.1| serine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 426

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERALYNFMLDLHVYEQGYTEMITPYIVNSQAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I   ++LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNFYSQEILDEKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    + S     KM  +   I  +L L    +   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DADHSYEELEKMTQNAEEILQKLELPYRVVALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D       V 
Sbjct: 339 VWIPAQNTYREISSCSNTEDFQARRAMIRYRDSNGKIRYVH 379


>gi|312868969|ref|ZP_07729149.1| serine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311095533|gb|EFQ53797.1| serine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 433

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +AD    +G++  + + + ++  
Sbjct: 163 FVYYLGLGAQLERAVYNFMLDEHMKDGYTEVLPPYIVNADSMYGTGQFPKFKEGVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP     +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRGEVIPEEELPVYVTALTPCFRSEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S     KM  +   I  +L +    +   +  +    S     E 
Sbjct: 280 FNKVEMVKY-TKPENSWDELEKMTANAENILKKLDIPYHVITLTTSDMSFTASETHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     +V    + +DF     +T + D   
Sbjct: 339 WMPAQKKYREVSSCSNCLDFQARRMHTQYRDENG 372


>gi|119775498|ref|YP_928238.1| histidyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|166228611|sp|A1S862|SYH_SHEAM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119767998|gb|ABM00569.1| histidyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 424

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 147/438 (33%), Gaps = 48/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        + A++R+     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPNQSPVWQKLEAVLRDAVAAFGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       +     FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYTGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGG 204
            R+F       + +           M  + L  + +LGL    +        ++      
Sbjct: 122 YRQFHQFGVEVYGIASADIDAEVL-MLSNML--WQKLGLTEHVVLEINTLGDSDERAAYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D    F+ +      +    + + +    + ++N +   I++    +  +    + +   
Sbjct: 179 DALIAFLEVHKDKLDEDSQRRMYSNPLRVLDTKNPEIQAILADAPALMDYLGEESKSHFS 238

Query: 263 HNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKGADGKD--H 310
              +L D++    R      RG++     +F       G + ++     + G  G+    
Sbjct: 239 TLRELLDAVGIQYRVNPRLVRGLDYYNRTVFEWVTDSLGAQGTVLAGGRYDGLVGQLGGK 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA---PFKISLINIKAHDQVCRDACEK 367
                 + +G  R+V  ++E+            +A   P  + +      D  C  A   
Sbjct: 299 DTPAVGFAMGLERIVL-LLETL----------ELAKDVPAAVDVYVTAMGDS-CVPAAFA 346

Query: 368 IYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
           I   L     G  +     G     Q   AD  G  L +I+G   +++ KV IK  R   
Sbjct: 347 IANELRVALPGVRIMTHCGGGNFKKQIKRADKSGAALALIIGDNELAEGKVAIKPLRNDN 406

Query: 425 IREDMSLEEVINYASHRF 442
            ++ ++ E +        
Sbjct: 407 EQQLVAREALAETIKALI 424


>gi|187934816|ref|YP_001884426.1| glycyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|187722969|gb|ACD24190.1| glycine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 463

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 119/365 (32%), Gaps = 73/365 (20%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKAVQRSSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF       F   P G+   ++K +  Y   F    L ++ ++ E+  +     
Sbjct: 215 FTFRTREFEQM-ELEFFCKP-GTDLEWHKYWKDYCWNF----LLNLNVKTENLRMRDHGE 268

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                    F   + +            +             H E  
Sbjct: 269 EELS------------------FYSNATSDIEYLFPFGWGELWGIADRTDYDLKKHQEHS 310

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVA 326
                                             +    + + +   +    +GA RV  
Sbjct: 311 GQ-----------------------------DLNYLDQTNNEKYIPYVIEPSLGADRVTL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        +   ++Y+ LSK   
Sbjct: 342 AFLIEAYDEEELDGGDSRTVLHLHPALAPFKAAILPLSKK---LSENALEVYSSLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D  V I++R T  +E + + E+  Y
Sbjct: 398 NIDFDETG-SIGKRYRRQDEIGTPYCITVDFDTLEDQCVTIRNRDTMEQERIKISELEAY 456

Query: 438 ASHRF 442
                
Sbjct: 457 IEKSL 461


>gi|168486226|ref|ZP_02710734.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183570682|gb|EDT91210.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 429

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNSATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVESAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|213965838|ref|ZP_03394030.1| glycyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951597|gb|EEB62987.1| glycyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 460

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 142/446 (31%), Gaps = 65/446 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     +         + +    +    +W  SG   ++     E L
Sbjct: 34  WDYGPLGVELKENIKRQWWKTFVTGRKDVVGLDSSIILPRQVWEASGHVATFTDPLVESL 93

Query: 95  RLADRNDKAMIYGPT---HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
               R     +       H     +            P  +         E +   G+M+
Sbjct: 94  HTHKRYRADHLLEAYEAKHGHPPANGLADVPDPETGQPGKWT--------EPQMFSGLMK 145

Query: 152 SREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +    + +      + PE ++     +FV++  +        I      G  G    +E 
Sbjct: 146 TYLGPVDNEQGLHYMRPETAQ----GIFVNFKNVMTT---ARIKPPFGIGQTGKAFRNEI 198

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P +  +  D      +   W        +  N + FD 
Sbjct: 199 TPGNFIFRTREFEQMEIEYFVAPDQAEEKFDEW----VDACWNWFIDLGVNPENMRQFDV 254

Query: 271 LPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKD 309
             E    SAR I+  + F+F              T Y L         D        G+ 
Sbjct: 255 PDERAHYSARTIDFEYRFHFQGNEWGELMGVANRTDYDLGCHIEHSKEDLRYHDQVTGEK 314

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
           +   +     G  R + A +  ++  +              +     ++P K++++ +  
Sbjct: 315 YVPYVIEPSFGLTRALMAFLCDAYTEEEVPNAKGGTDTRTVLKLDPRLSPVKVAVLPLSK 374

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D       E +  +L +    V +D  G  IG ++   D +G P  V V    + D+ V
Sbjct: 375 KD-TLTPTAEAVADKLRQYWA-VDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAV 431

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++ R T  +E + ++E+  Y + R 
Sbjct: 432 TVRDRDTMEQERVKIDELEGYLAARL 457


>gi|297194489|ref|ZP_06911887.1| glycyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718701|gb|EDY62609.1| glycyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 460

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 72/467 (15%), Positives = 153/467 (32%), Gaps = 70/467 (14%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQS 76
           L  R G ++  S      K  + + PLG +  +N+          +    + +    + +
Sbjct: 12  LSKRRGFVYPCSEIYGGQKAAWDYGPLGVELKENIKRQWWRYMVTSREDVVGIDSSVILA 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            ++W  SG   ++   +      + +         +EE    +  + +    +L      
Sbjct: 72  TEVWEASGHVATFTDPLTECTSCHKRYRADHLEEAYEEKHGRLPENGL---ADLNCPNCG 128

Query: 135 IQLKFRDELRPRFGVMRSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LK 191
            +  F  E +   G++ +             L PE ++            IF   G  L+
Sbjct: 129 NKGTF-TEPKQFSGLLSTHLGPTQDSGSVAYLRPETAQ-----------GIFTNFGQVLQ 176

Query: 192 SIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +   +   G   +G    +E         T+ F   +   F  P E+  + +        
Sbjct: 177 TARKKPPFGIAQMGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEKWHEYWMEQRWN 236

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSL 296
                     +    E       +    S R  ++ + F FG             T Y L
Sbjct: 237 WYRDLGLREENMRWFEH---PQEKLSHYSKRTADIEYRFQFGGSEWGELEGVANRTDYDL 293

Query: 297 PM-------SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG----------- 337
                       +   D ++ +   +     G  R + A +  +++              
Sbjct: 294 KAHSKASGTDLLYFDQDAQERWTPYVIEPAAGVGRAMLAFLLDAYNEDEAPNAKGVMEKR 353

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +     +AP K++++ +  + Q      + + A L K   ++ +DD G  IG ++   
Sbjct: 354 AVLRLDPRLAPVKVAVLPLSRNAQ-LSPKAKGLAADLRK-NWNIEFDDAGA-IGRRYRRQ 410

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +G P  V V    + D+ V ++ R T  +E +SL+++  Y   R 
Sbjct: 411 DEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVSLDQIQGYLGSRL 457


>gi|325102964|ref|YP_004272618.1| glycyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324971812|gb|ADY50796.1| glycyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 490

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 73/495 (14%), Positives = 160/495 (32%), Gaps = 86/495 (17%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV-- 71
           + SH      G +   S        +Y +  LG +  +N+ A   +   +     + +  
Sbjct: 12  VISHAK--EYGFVFPSSEIYDGLSAVYDYGQLGAELKNNIKAYWWKSMVQLNENIVGIDS 69

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH-------------------EE 112
                  +W  SG  D +   M+   D   +                           EE
Sbjct: 70  AIFMHPKIWKASGHVDGFNDPMIDNKDSKKRYRADQLLEDKIARYEKDGKQDKANQLQEE 129

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +   +   ++   ++L    ++I                 R+F +  +       EGS  
Sbjct: 130 MDKALNDDNLARLKDL-IIEHEIACPV----SGTRNWTDVRQFNLMFSTQMGAMAEGSDE 184

Query: 173 SYNK------MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            Y +      +FV++L +    R+ +     +     IG    +E I        + F  
Sbjct: 185 VYLRPETAQGIFVNFLNVQKSGRMKIPFGIAQ-----IGKAFRNEVIARQFIMRMREFEQ 239

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +   F  P    ++        +                +  F    +    +   +++
Sbjct: 240 MELQFFVKPGTEMEWYKKWKETRLKWHLALGT-----NPAKYRFHDHTKLAHYANAAVDI 294

Query: 285 GHIFYFG----------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
              F FG          T + L     F G           + +   +    IG  R   
Sbjct: 295 EFEFPFGFKEVEGIHSRTDFDLKQHQEFSGKKLQFFDPEINQSYVPYVVETSIGVDRFFL 354

Query: 327 AVIESSHDGKG------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           A + ++++ +             +     +AP+K +++ +   D    +   +I  RL K
Sbjct: 355 ATLINAYEEQDLSTEDKKDSRTVLHLHPVLAPYKAAVLPLTKKD-GLPEKAREIMNRL-K 412

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +  +V +D+  + IG ++   D +G P  + V  + + D+ V I+HR +  +E +S+ ++
Sbjct: 413 LDYNVTYDE-KDSIGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRHRDSMEQERISIADL 471

Query: 435 INYASHRFSNNRPVL 449
            +       + + VL
Sbjct: 472 -DRIIGELVSWKNVL 485


>gi|262374931|ref|ZP_06068165.1| histidyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309944|gb|EEY91073.1| histidyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 431

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 138/443 (31%), Gaps = 53/443 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP    A   +   +    +  G  ++ +P ++  +L+  S     D   KEM 
Sbjct: 8   KGFNDILPTQTPAWRRLEQHLSGLMDAYGYQQIRLPIVEQTNLFKRSIGDATDIVEKEMY 67

Query: 95  RLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+ +  +++   P            H       P  +Y I   FR E +P+ G  R 
Sbjct: 68  TFLDKGNPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWY-IGPMFRYE-KPQKG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGGD 205
           R+F      +F +           M     R++ R+G+             ++       
Sbjct: 124 RQFHQFGVETFGVATPDMDAELILM---TARLWKRMGVADKVQLELNTLGESDERAAYRA 180

Query: 206 LSHEF--IVLADTGET----------QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
              EF     AD  E           ++  SKD     I        D +   ++     
Sbjct: 181 ALVEFLESHKADLDEDSQRRLTTNPLRILDSKDAKTQSILENAPKLHDFMGEETLAHFAQ 240

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK----- 308
                T    +  +   L        + +      + G++ ++     + G  G+     
Sbjct: 241 LQQYLTDAGVSFVINQKLVRGLDYYNKTVFEWTTTHLGSQGTVCAGGRYDGLVGQLKGKA 300

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           D  V    + +G  R++  ++    +              + L+   A         E+I
Sbjct: 301 DQSVPAVGFAMGIERLL--LLLEQVEDNTPTRDCE-----VFLVAEPASQGKALVIAEQI 353

Query: 369 YARLSKVGCDVFWDDMGEQIG------SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +L   G  V       ++G      SQ   AD  G     I+G + +      +K   
Sbjct: 354 RDQLEAAGSQVRL-----KVGSQGSMKSQMKKADQAGALYAAILGERELEAQAFTVKELA 408

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  + ++   + + + S + S+ 
Sbjct: 409 TAEQSNVPFTDFVAFFSTKISSK 431


>gi|240047245|ref|YP_002960633.1| glycyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239984817|emb|CAT04804.1| Glycyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 453

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 130/360 (36%), Gaps = 70/360 (19%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +   +++   P   + +   F++ ++S R  LPF   QI   FR+E+ P   + R+RE
Sbjct: 154 VVENQKQSIYLRPETAQGIFINFQNILRSTRTKLPFAVGQIGKAFRNEITPGNFIFRTRE 213

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F   P+ S   Y            ++GLKS  +R                  
Sbjct: 214 FEQMELEVFCH-PQDSNKIYQLYLEKVGNFLQQVGLKSDNVRL----------------- 255

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                              E   A Y+  +  +         E 
Sbjct: 256 -------------------------------RHHQESELAHYSNATADYEFNFGFGWGEL 284

Query: 275 KRVSARGIEVGHIFYFGT--KYS-LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE- 330
             ++ RG      F   T  KYS   M       + K     +    +G  R++ +++E 
Sbjct: 285 YGIAHRG-----DFDLQTHQKYSGQKMDYLDLTTNQKIVP-HVIEPSVGLDRLMLSILEN 338

Query: 331 -----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                  +D   + +   +AP+K++++ +            +I+  L        +++  
Sbjct: 339 SFEYEEENDRYLLKFNYKMAPYKVAVLPLVKKLSPQ---AYQIFENLLTNKISAIFEEAN 395

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             IG ++   D +G P  +      ++D+ V I++R +  +E ++L++++++  ++F+  
Sbjct: 396 -SIGKRYRQQDAIGTPFCITFDYDSLNDNSVTIRYRDSMQQERIALDKIVDFL-NKFAKE 453


>gi|221485669|gb|EEE23950.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 1151

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 40/251 (15%)

Query: 126  RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            R+LP    +    FR E R    G+ R REF   D +    T E +         S L +
Sbjct: 904  RHLPLRISEFGRVFRRERRSALCGLFRLREFTQDDGHIL-CTREQAVEEIKVQLASILHL 962

Query: 185  F-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +    G+    ++   G      S      AD+ E +   ++        +         
Sbjct: 963  YVQVFGISPECVKVSLGSRPAKASRRSDASADS-EDEKLWTQAEAWLMEAARE------- 1014

Query: 244  SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                            S V  E+   +    K   +     G  +  GT   L +     
Sbjct: 1015 -----------VLPNASSVETEEGGGAFYGPKLDFSLSDVQGRWWQTGTLQPLVL----- 1058

Query: 304  GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                      +    +G++    A++    +G   +W   +AP K  +  +    +  R+
Sbjct: 1059 ----------IHRAAVGSLERFLALLLELRNGDLPVW---LAPVKAVVCPVSVQSREIRE 1105

Query: 364  ACEKIYARLSK 374
              E++   L +
Sbjct: 1106 YAERVATVLRE 1116



 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 19  EIASHKLMLRTGMIHQHSKGI------YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E   H+ + R   +               +LP G++ L N+ +++ + Q      ++  P
Sbjct: 695 ERKDHRELGREMGLFVLPPASDVGAVGPVFLPEGRQLLANLKSVLAQHQRLLQFQQVETP 754

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA----DRNDKA 103
           +L  + LW  SG +  Y + M  ++    D   + 
Sbjct: 755 SLAQSGLWRRSGHWTHYRENMWTVSASPRDEEKEK 789


>gi|261868682|ref|YP_003256604.1| histidyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261414014|gb|ACX83385.1| histidyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 425

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 138/436 (31%), Gaps = 42/436 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +R      G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTETPLWQWVENKVRSVLQAYGYAEIRMPIVESTPLFARAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR+D+++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMFTFNDRDDESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F +           +     R++  LG+    +  +   IG   + +  
Sbjct: 122 YRQFHQVGVEIFGIPNPEIDAE---IIALTARLWKDLGIFD-HVTLQLNSIGSLEARKNY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE---KLF 268
             A     Q        D            + S +  V+Q         D  +E   + F
Sbjct: 178 RQALVAFLQNHLDILDEDSKRRLTTNPLRILDSKDQRVQQVLNDAPKLHDYLDEESREHF 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSAT--------FKG--ADGKD 309
             L           E+      G  Y         +  + A         + G       
Sbjct: 238 AQLCALLDNLGITYEINQKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR-DACEKI 368
           H      + +G  R+V  V E +   K I  P +V    I ++       V      EK+
Sbjct: 298 HATSGVGFAMGLERLVLLVQEVN---KQITLPSAV---DIYIVYPGEGTTVAAFSLAEKL 351

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IRE 427
            + L            G     QF  AD  G  L +++G   V + +V +K  L    + 
Sbjct: 352 RSELP--HLRTLLHCSGGNFKKQFKRADKSGAKLALVIGEDEVKNQQVVVKELLQHSEQV 409

Query: 428 DMSLEEVINYASHRFS 443
            ++L ++  +  + F 
Sbjct: 410 VVALSDITTHIQNTFK 425


>gi|91775972|ref|YP_545728.1| histidyl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|123380447|sp|Q1H0V0|SYH_METFK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|91709959|gb|ABE49887.1| histidyl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 419

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 140/435 (32%), Gaps = 51/435 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            Q  KG Y  LP        +    R+  ++ G   + +P ++  +L++       D   
Sbjct: 5   FQSIKGFYDILPADTALWQRIEDSARQVLSQYGYRNIRLPIVEPTELFIRGVGEHTDIVE 64

Query: 91  KEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM    D+ N   +   P            H  +Y N P   + +   FR E       
Sbjct: 65  KEMYSWEDKLNGDRLTLRPEGTAGCVRAVVEHSLTY-NGPQRLWYMGPMFRHE---NVQK 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---- 205
            R R+F    A +F  T          M     R++  LG+ +  +  +   IG      
Sbjct: 121 GRQRQFHQIGAEAFGYTGPDVDAEQISMLA---RLWRELGVAN-EVELQLNTIGDASERA 176

Query: 206 ----------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                       HE ++  D            +D   P+  T  +    L   + + +  
Sbjct: 177 QYRQVLIRYFEQHESLLDDDAKRRLYANPLRILDSKNPAMQTMIEAAPKLLDSLGEESRA 236

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVG--HIF-----YFGTKYSLP----MSATFKG 304
           +        ++L            RG++     +F       G++ ++       +  + 
Sbjct: 237 HFDGVTRQLDQLGIKW-TLNTRLVRGLDYYNRTVFEWVTNKLGSQGTIAGGGRYDSLVQS 295

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK+       +GIG  RV   ++      +    P       + L+N+         A
Sbjct: 296 LGGKETPA--CGFGIGLERVF--LLMRECGIEAFHSP------DVYLVNVG---DAANKA 342

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
              I   L   G  V     G    SQ   AD  G    +I+G   ++ ++V +K  R  
Sbjct: 343 ALPIAEALRDSGLSVSLHAGGGSFKSQMKKADQSGAQYALILGDDEIAANEVCLKPLREN 402

Query: 424 GIREDMSLEEVINYA 438
           G +  MSL + I   
Sbjct: 403 GEQRRMSLSQAIEAL 417


>gi|331653942|ref|ZP_08354943.1| histidine--tRNA ligase [Escherichia coli M718]
 gi|331048791|gb|EGI20867.1| histidine--tRNA ligase [Escherichia coli M718]
          Length = 424

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 REALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|54288337|gb|AAV31625.1| predicted histidyl-tRNA synthetase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 422

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 137/413 (33%), Gaps = 27/413 (6%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q ++G    LP        V    R   +R G  EM+ P  + ++++        D   K
Sbjct: 5   QPARGTADLLPKNMAKHRLVIEAARNAASRYGFQEMATPIFEFSEVFSRPLGESSDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E    +DR  + +   P +   +     S     +NLP  ++     FR E RP+ G  R
Sbjct: 65  ENYSFSDRGGEMLTLRPENTAGVVRAVISGGL-TQNLPLKYFYAGPMFRYE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKM---FVSYLRIFHRLGLK-----SIPMRAESGPIG 203
            R+F              +          F++ L +     L          RA      
Sbjct: 121 MRQFHQVGVEYLGPDHSLADAEVIACGARFLATLGVLDDCVLHLNSLGDGESRAAYRSAL 180

Query: 204 GDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D   EF      D+           +D     + +   D   L   +   +  + AT  
Sbjct: 181 IDYLEEFGDQLSDDSKTRLKVNPLRILDSKDAGDRSILKDAPQLQDYLNDDSKTHFATLV 240

Query: 262 VHNEKLFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
              +    +   +     RG++      F F T  +L    T  G    D   +M     
Sbjct: 241 AALDAAGVAWVFDPL-LVRGLDYYCHTAFEFVTN-ALGAQGTVLGGGRYDGLAEMLGGPR 298

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +    AA +E      G   P S  P K++++      Q        +   L   G D+
Sbjct: 299 ISGVGWAAGVERLAMLVGETVPAS--P-KVAIVTADDAAQQAA---FGLTETLRDAGIDI 352

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                G  +G +   AD  G  L VI+GS  ++ + V ++    G ++++ L+
Sbjct: 353 DLPI-GGSMGKKLKKADKAGIRLVVIMGSDELAKNIVLLRDLSDGSQQELPLD 404


>gi|283786130|ref|YP_003365995.1| histidyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282949584|emb|CBG89202.1| histidyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 424

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 134/447 (29%), Gaps = 65/447 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A +F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGAEAFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSQEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     +    K   D      +     + S N  V+          D  ++   +  
Sbjct: 178 RDALVAFLEQHVDKLDEDCKRRMYSNPLRVLDSKNPQVQALLNDAPQLGDYLDDDSREHF 237

Query: 272 -------------PENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKD 309
                            +   RG++     +F       G++ ++     + G       
Sbjct: 238 AGLCRLLEAAGIAYTVNQRLVRGLDYYNRTVFEWVTSSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R+V  V   +                +  I + A     + A   + 
Sbjct: 298 RPTPAVGFAMGLERLVLLVQAVN---------PEFTADPVVDIYLVASGADTQSAAMTLA 348

Query: 370 ARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKV 416
            RL             E  G +             FA AD  G  + +++G   V+   V
Sbjct: 349 ERL-----------RDELPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVAAGTV 397

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            +K   +G +  ++ + V  +     +
Sbjct: 398 VVKDLRSGEQTAVAQDSVATHLRTLMA 424


>gi|225021787|ref|ZP_03710979.1| hypothetical protein CORMATOL_01815 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945483|gb|EEG26692.1| hypothetical protein CORMATOL_01815 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 466

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 65/486 (13%), Positives = 132/486 (27%), Gaps = 144/486 (29%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK------ 91
           + + PLG +  +N+         +  A  + +    +    +W  SG  +++        
Sbjct: 39  WDYGPLGVELKENIKKQWWRTFVQGRADMVGLDSSIILPRQVWEASGHVETFTDPLVESL 98

Query: 92  --------------------------------------------EML---------RLAD 98
                                                       +M           + +
Sbjct: 99  HTHKRYRADHLLEAYEQKHGHPPANGLADVPDPETGQPGAWTEPQMFSGLMKTFLGPVDN 158

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                 +   T + +  +       +    PF   Q+   FR+E+ P   + R+REF   
Sbjct: 159 EQGLHYMRPETAQGIFINFKNVQTTARMKPPFGIGQVGKAFRNEITPGNFIFRTREFEQM 218

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +   F ++P  +   + +                                          
Sbjct: 219 EIEYF-VSPSDAPEKFQE------------------------------------------ 235

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              +    +  F     N D      +        +      +           E   V+
Sbjct: 236 ---WVDACWDWFIDLGINPDNMRQFDVPKEERAHYSAGTIDFEYRFGFAGSEWGELMGVA 292

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIE 330
            R           T Y L     + G D        G+ +   +     G  R + A + 
Sbjct: 293 NR-----------TDYDLGSHIKYSGEDLSYFDQVTGERYVPYVIEPSFGLTRAMMAFLC 341

Query: 331 SSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-G 376
            ++                 +     +AP K++++ +   D       E I A L K+  
Sbjct: 342 DAYHEDEAPNAKGGVDKRTVLRLDRRLAPVKVAVLPLSKKD-TLLPTAEAIAADLRKLWN 400

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D  +D  G  IG ++   D +G P  V V    + D  V ++ R T  +E ++++E+  
Sbjct: 401 ID--YDIAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDRSVTVRERDTMAQERVAIDELPA 457

Query: 437 YASHRF 442
           Y   R 
Sbjct: 458 YLGARL 463


>gi|90961171|ref|YP_535087.1| seryl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|301299680|ref|ZP_07205935.1| serine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122449395|sp|Q1WVB3|SYS_LACS1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|90820365|gb|ABD99004.1| Seryl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|300852720|gb|EFK80349.1| serine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 425

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG K    V   + +E  + G  E+  P +  +     +G++  +  ++ ++  
Sbjct: 163 FVFYKGLGAKLERAVYNFMLDEHAKEGYTEVIPPYIVKSKSMYGTGQFPKFKDQVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +    +LP  F  +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYREEVIPTEDLPVYFTALSPSFRSEAGSAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S +   KM  +   I  +LGL    +   +G +G   +     E 
Sbjct: 280 FNKVEMVKY-TKPEDSYNELEKMTKNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     ++    +  DF        + D   
Sbjct: 339 WMPAQDTYREISSCSNCEDFQARRARIQYRDENG 372


>gi|170292177|pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
           Complexed With A Histidyl-Adenylate Analogue
 gi|170292178|pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
           Complexed With A Histidyl-Adenylate Analogue
 gi|170292179|pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
           Complexed With A Histidyl-Adenylate Analogue
 gi|170292180|pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
           Complexed With A Histidyl-Adenylate Analogue
          Length = 431

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 13  QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 72

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 73  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 129 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 184

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 185 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 244

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 245 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 305 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 358

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 359 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 413

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 414 QTAVAQDSVAAHLRTLL 430


>gi|254429026|ref|ZP_05042733.1| histidyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195195|gb|EDX90154.1| histidyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 424

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 148/443 (33%), Gaps = 63/443 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP        + A +       G  E+ +P ++  DL+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTGLWQWLEAKVGAVLASYGYQEIRMPIVEQTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPT-------HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             DRN  ++   P          E    ++              +     FR E RP+ G
Sbjct: 70  FDDRNGDSLTLRPEGTASCVRACEQHGLLYNQT--------QRLWYTGPMFRHE-RPQAG 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL-- 206
             R R+F      +F ++          + +   R++  LGL    +  E   +G     
Sbjct: 121 --RYRQFHQIGVETFGMSGPDIDAE---VILLTARLWKALGLAD-KVTLELNSLGDSADR 174

Query: 207 ---------SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                      +  V A  G++Q    +  +   + S++    +++     +  +    A
Sbjct: 175 ARYRDALVDYLKIHVDALDGDSQKRLERSPLR-VLDSKDPGTREVLKDAPQLADYLNDEA 233

Query: 258 ATSDVHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--A 305
                  + L D+     +      RG++     +F       G + ++     + G   
Sbjct: 234 VAHFEGLKALLDASGIAYKVNPYLVRGLDYYGKTVFEWVTDALGAQGTVCAGGRYDGLVE 293

Query: 306 D--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              GK        + +G  R++  +IE          P+  AP  + ++ +         
Sbjct: 294 QLGGKPTPAV--GFAMGVERLIL-LIEQEK-------PELSAPVDVYVMAMGDVLASTMA 343

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
             E++   L            G    SQ   AD  G  + +I+G   ++ + V +K  R 
Sbjct: 344 LSEQLRDALPGRAI--QLHCGGGSFKSQMKKADRSGAAVALIIGEDELASNSVMVKPLRG 401

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              ++ +S ++V +      ++N
Sbjct: 402 QAEQQQVSRDQVASELVALLADN 424


>gi|300951781|ref|ZP_07165596.1| histidyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300958856|ref|ZP_07170964.1| histidyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300314508|gb|EFJ64292.1| histidyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300448978|gb|EFK12598.1| histidyl-tRNA synthetase [Escherichia coli MS 116-1]
          Length = 424

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 131/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGIAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V+ +     
Sbjct: 407 QTAVAQDSVVAHLRTLL 423


>gi|1942448|pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
 gi|1942449|pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
 gi|1942450|pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
 gi|1942451|pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
          Length = 423

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 5   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 65  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 121 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 176

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 177 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 236

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 237 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 296

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 297 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 350

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 351 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 405

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 406 QTAVAQDSVAAHLRTLL 422


>gi|329943234|ref|ZP_08292008.1| seryl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|332287813|ref|YP_004422714.1| seryl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|313848385|emb|CBY17389.1| seryl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506521|gb|ADZ18159.1| seryl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328814781|gb|EGF84771.1| seryl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328915073|gb|AEB55906.1| seryl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 426

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 74/206 (35%), Gaps = 8/206 (3%)

Query: 8   LPILQENPRDAEIASHKL--MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           LP     P+     + KL  +           G  ++   G      +   +  +Q   G
Sbjct: 129 LPTFSFTPKHHVELNQKLQILDFKLPAKTSGSGWPAYKNQGVCLEWALLTYLLNKQREHG 188

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                 P L   D+   SG+   +  +  R+ D  D+++   PT E V+       I S 
Sbjct: 189 FQLWLPPLLVKHDILFGSGQIPKFDGQYYRVED-GDQSLYLIPTAEVVLNGFHSQEIFSE 247

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++LP  +      FR E         G++R  +F   + ++F  TP+ +  +Y+KM    
Sbjct: 248 KDLPIYYAAFTPCFRREAGAAGAHERGLVRVHQFHKVEMFAF-TTPDQADQAYDKMLSVV 306

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLS 207
             I   L L        +G +    S
Sbjct: 307 EDILTELKLPYRLSLLSTGDMSFTAS 332


>gi|256391560|ref|YP_003113124.1| histidyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256357786|gb|ACU71283.1| histidyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 420

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 134/433 (30%), Gaps = 38/433 (8%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            Q++ G +  LP    A   V   +       G   +  PT +S  L+        D   
Sbjct: 4   FQNAPGTFDLLPPDSAAFLGVREAMTAPLRAAGYDYIETPTFESTALFKRGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM     R    +   P     +            +LP   +     +R E + R    
Sbjct: 64  KEMYSFTTRGGDDVTLRPEGTASVLRAALQANLIRGSLPVKLWYSGSFYRYEKQQR---G 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R F    A +              +      I+  LGL    +   S       P+  
Sbjct: 121 RYRHFSQVGAEALGAEDPALDAELLIIGD---DIYRGLGLTEYSLLLNSLGDQKCRPVYR 177

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +   EF+   D  E     ++      +  +       ++   ++               
Sbjct: 178 EKLQEFLRGLDLDEETRKRAEINPLRVLDDKREAVQRQLTGVPLISDNLCEECRAYHEEV 237

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG---ADGKDH 310
            +L  +         +             E  H    G+  ++     + G     G   
Sbjct: 238 RRLLTAAGVKFLDDPKLVRGLDYYTRTTFEYVHSGITGSPTAIGAGGRYDGLSEELGGPS 297

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +G + +G  R V A+     +G+ +      A  ++ +  +   DQ  R+   ++  
Sbjct: 298 LPSVG-WALGVDRTVLAL---HAEGREVA-----AGDQLDVFAVPLGDQ-AREVLFELVT 347

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G    +    + I +    AD  G    +++G + ++++ ++IK   TG +E +S
Sbjct: 348 TLRRSGVAADFGYGSKGIKAAMKAADRSGARYALVLGERDIAENIIQIKELATGEQESVS 407

Query: 431 LEEVINYASHRFS 443
             +++     +  
Sbjct: 408 FTDIVTTIQEKLK 420


>gi|320547659|ref|ZP_08041944.1| histidine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320447734|gb|EFW88492.1| histidine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 425

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 137/449 (30%), Gaps = 67/449 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V A+ RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPSESAKWQYVEAVARETFKKYNYSEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS +++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F  LG+K + +   +       
Sbjct: 120 AG--RLREFHQVGVECFGSANPATDVETIAM--AYQ-LFQTLGIKDVTLHLNTLGSAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPMRDKLSADSQRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLP--------- 297
                               +          RG++     IF F T              
Sbjct: 235 AHFDAVREML-------DTLNIPYVIDTNMVRGLDYYNHTIFEFITTVDKSDLTICAGGR 287

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKISLINIK 355
             +  +  DG +       +G+G  R++  +     + +GI  P    +  +   L    
Sbjct: 288 YDSLVEYFDGPETPGF--GFGLGIERLLLIL-----EKQGIELPVEKEMDTYIAVL---- 336

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              Q        +   +   G     D +G +I +QF  AD       + +G   +   +
Sbjct: 337 --GQGANIKALGLVQAIRNQGFSAERDYLGRKIKAQFKSADAFNAKTIITLGESEIEAGQ 394

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V +K+  T      S  E+ +      + 
Sbjct: 395 VTVKNNKTREEVSASFAEIESNFGEILAK 423


>gi|168491651|ref|ZP_02715794.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183574087|gb|EDT94615.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 429

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 139/451 (30%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++        + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLI-----FEKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +            ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDG---ANAKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V IK+  T     +SLE +    S  F  
Sbjct: 393 GQVTIKNNQTREEVQVSLETISKNFSEIFEK 423


>gi|114777430|ref|ZP_01452427.1| histidyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114552212|gb|EAU54714.1| histidyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 412

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 126/425 (29%), Gaps = 56/425 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEMLR 95
           GI+  LP        V    R+        E+ +P L+  +L+V S   D+    KEM  
Sbjct: 11  GIHDGLPGEVARWQRVEQAARKVFGSYAFSEVRMPVLEPVELFVRSVGEDTDIVSKEMYA 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+    +   P   E      R+ ++    R     +Y I   FR E RP+ G  R R
Sbjct: 71  FTDQGGDHICLRP---EGTAGAVRAWLQGGLTRAGAQRWYYIGPMFRRE-RPQKG--RLR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F       F             M  ++L     LG+  + M           S      
Sbjct: 125 QFQQIGVEMFSAPGPIEDAEILAMAHAFL---SELGVPELKMEIN--------SLGCNSC 173

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA--TSDVHNEKLFDSL 271
                 ++          +     +      +  +  +  +  A    +      L D+ 
Sbjct: 174 RPGYRDKLVTYLQARADRLCETCVERITRNPMRVLDCKVASCQAELGDAPEMVANLCDAC 233

Query: 272 PENKRVSARGIEVGHIFYF-------GTKY--SLPMSATFKGADG-KDHYVQMGSYGIGA 321
             +     +G++   I Y        G  Y              G +   +  G Y    
Sbjct: 234 DRHFTDVQKGLDALAIPYSVNPRIVRGLDYYNRTAFEI-VTDKLGAQGTVLAGGRYDGLV 292

Query: 322 MRV---------VAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +          AA +E      D      P       ++++ +    +  +       
Sbjct: 293 EELGGPATPAIGFAAGLERLAMLLDDDEATGP------DMAVVALG---EAVQGYALAQA 343

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K G  V     G     QF +AD  G     ++G   +    V +K+  TG ++ +
Sbjct: 344 DLLRKAGLSVVH-CGGGSAKRQFKMADREGVRFVAVIGDDEMQAGTVMLKNMATGEQQSV 402

Query: 430 SLEEV 434
           +   V
Sbjct: 403 ATAAV 407


>gi|225861939|ref|YP_002743448.1| histidyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230974|ref|ZP_06964655.1| histidyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254103|ref|ZP_06977689.1| histidyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501624|ref|YP_003723564.1| histidine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|254782352|sp|C1CU26|SYH_STRZT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225726465|gb|ACO22316.1| histidyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237219|gb|ADI68350.1| histidine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|327388859|gb|EGE87207.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
          Length = 429

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|284053071|ref|ZP_06383281.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 103

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP  + ++ +       RD  + I   L +       D+ GE++G Q    +L   P+ 
Sbjct: 1   MAPVMVRVLVV---SDRFRDYAKSIVQSLKQQNIRAEVDNTGERLGKQIRACELEKIPVT 57

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V++G + + +  + ++ R  G    M+L ++    
Sbjct: 58  VVIGQRELDNQSLSVRTRSRGDIGTMTLPQLTEEI 92


>gi|271501570|ref|YP_003334596.1| histidyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270345125|gb|ACZ77890.1| histidyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 424

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 140/436 (32%), Gaps = 43/436 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+  P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETALWQRIEDSLKQVLRGYGYSEIRTPLVEQTSLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       +     FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGILYNQE-QRLWYTGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLKGPDIDAE---MILMTARWWRVLGIDQ-HVNLELNSIGSLDARARY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDVHNEKLF 268
             A     +    +   D            + S N+ V+             D  +   F
Sbjct: 178 RDALIAFLEQHKDQLDEDCLRRMYTNPLRVLDSKNAQVQALLNNAPTLTDYLDDESRTHF 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGA---DGKDHYVQM 314
           D L E    S    +V      G  Y           SL    T  G    DG    +  
Sbjct: 238 DELCELLTQSGIPYKVNPRLVRGLDYYNRTVFEWVTSSLGSQGTVCGGGRYDGMVEQLGG 297

Query: 315 GS-----YGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQ-VCRDACEK 367
            S     +G+G  R+V  V   +          +V P     LI+  A  Q       EK
Sbjct: 298 SSTPAVGFGMGLERLVLLVQTVNPA-------FAVQPGVDAYLISSGAGTQHAAIRLAEK 350

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L ++     +     +   QFA AD  G  + +++G   V+  +V +K+   G +E
Sbjct: 351 LRDALPQLKLMTNYGGGNFK--KQFARADKSGARVALVLGETEVAAGQVVLKNLTNGEQE 408

Query: 428 DMSLEEVINYASHRFS 443
            +S  +V    +   +
Sbjct: 409 TLSQADVAARLAALLN 424


>gi|301648269|ref|ZP_07248012.1| histidyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|307139149|ref|ZP_07498505.1| histidyl-tRNA synthetase [Escherichia coli H736]
 gi|331643134|ref|ZP_08344269.1| histidine--tRNA ligase [Escherichia coli H736]
 gi|301073656|gb|EFK88462.1| histidyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|331039932|gb|EGI12152.1| histidine--tRNA ligase [Escherichia coli H736]
          Length = 424

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVKQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|290968830|ref|ZP_06560367.1| histidine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781126|gb|EFD93717.1| histidine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 422

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 140/431 (32%), Gaps = 34/431 (7%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             +G   +LP        + A IR         E+  P  ++ +L++       D   KE
Sbjct: 5   APRGTQDFLPEQTAEWQMLEAKIRRICALYEFGEIRTPLFENTELFLRGIGETTDVVTKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR  ++M   P +   +   F  H          FY +   FR + RP+ G  R 
Sbjct: 65  MYTFVDRGGRSMTLRPENTASVVRSFLEHKLYGEQKVHKFYYMGPMFRHD-RPQAG--RY 121

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+F      +              +     ++F  LGL  + +   S       PI    
Sbjct: 122 RQFNQFGVEAIGSKDPAVDAE---IISLAFQLFRELGLNDLVLHLNSVGCPSCRPIYRQK 178

Query: 207 SHEFIV------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             +F          D  E         +D     E      +  +   + +    +    
Sbjct: 179 LLDFFADKKESLCDDCRERLEKNPLRVLDCKADGEKMMNMGVPLITEHLCESCQSHFQQV 238

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             + + +     ++ R   RG++      F   Y+ P+ A      G  +   +   G  
Sbjct: 239 QQYLQAVGIPFVKDPR-LVRGLDYYTNTAFEIMYA-PLGAQSTVCGGGRYDGLIAEVGGP 296

Query: 321 AMRVVAAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           +   +   +           +G++      P  +  I I A  +  R     +   L   
Sbjct: 297 STPGIGFAVGMERLLLTLKEQGLL----TVPVGVPPIFIVALGEAARAKAFVLQQALRAR 352

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                 D MG  +  Q   A+  G    VI+G + ++  +V++++ +T  +  + + E++
Sbjct: 353 QIAAEIDLMGRSMKGQMKAANKAGAWYTVIIGEEELARQEVQVRNMMTKEQIAVPMNELV 412

Query: 436 NYASHRFSNNR 446
            Y     SN R
Sbjct: 413 TYME---SNRR 420


>gi|240145042|ref|ZP_04743643.1| glycine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257202867|gb|EEV01152.1| glycine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291535367|emb|CBL08479.1| glycyl-tRNA synthetase, dimeric type [Roseburia intestinalis M50/1]
 gi|291538177|emb|CBL11288.1| glycyl-tRNA synthetase, dimeric type [Roseburia intestinalis XB6B4]
          Length = 465

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 121/373 (32%), Gaps = 84/373 (22%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F   P      +      Y R F R     LG+K   MR      
Sbjct: 214 FTFRTREFEQMELEFF-CEPGTDLEWFQ-----YWRGFCRDWLISLGIKEDEMRLRD--- 264

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                       D  E   +                          +             
Sbjct: 265 -----------HDPAELAFYS---------KGTTDIEFLFPFGWGELWGIADRTDYDLGR 304

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           H E     L                              F     + +   +    +GA 
Sbjct: 305 HQETSGQDLTY----------------------------FDDEKNERYLPYVIEPSLGAD 336

Query: 323 RVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           RVV A + +++D + I             +  ++AP KI ++ +        +  EK++A
Sbjct: 337 RVVLAFLCAAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKVFA 393

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +LS    +  +DD G  IG ++   D +G P  V    +  +D  V ++ R T  +E + 
Sbjct: 394 QLS-HKYNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFESENDGAVTVRDRDTMEQERIK 451

Query: 431 LEEVINYASHRFS 443
           +E++  Y + +F+
Sbjct: 452 IEDLDAYFAEKFN 464


>gi|306822376|ref|ZP_07455755.1| glycyl-tRNA synthetase beta subunit [Bifidobacterium dentium ATCC
           27679]
 gi|304554374|gb|EFM42282.1| glycyl-tRNA synthetase beta subunit [Bifidobacterium dentium ATCC
           27679]
          Length = 547

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 157/480 (32%), Gaps = 78/480 (16%)

Query: 19  EIASHKLMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMS 70
           E+ S  L  R G +       G     + + PLG    DN+          T    + + 
Sbjct: 64  EVVS--LAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRSMVVTRGDVVGVD 121

Query: 71  VPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
              +    +WV SG    +     E L    R+    +     E+    +  + +K    
Sbjct: 122 TSIILPPAVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGDKLPENGLKD--- 178

Query: 128 LPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIF 185
                     +    E R    ++R+    ++D  S   L PE ++            IF
Sbjct: 179 --IVCPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQ-----------GIF 225

Query: 186 HRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             +  K++   + S P      +G    +E         T+ F   +   F  P  + ++
Sbjct: 226 --VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEMEFFVAPGTDEEW 283

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------- 291
                               +  H E   + L    +   R +++ + F F         
Sbjct: 284 HQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYKFGFQGSDWGELE 340

Query: 292 -----TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG- 337
                T + L   A   G D        G+ +   +     G  R + A +  ++D    
Sbjct: 341 GVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMAFLVDAYDVDEA 400

Query: 338 ------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       +     +AP K +++ +    ++     + + A L +    + +D+ G
Sbjct: 401 PNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQNLAADLRQHDWMIDYDEAG 459

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             IG ++   D +G PL V V    + D  V I+ R T  +E ++L++V +Y + R    
Sbjct: 460 A-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQERVALDKVADYVAARIGEK 518


>gi|168180987|ref|ZP_02615651.1| glycyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226950974|ref|YP_002806065.1| glycyl-tRNA synthetase [Clostridium botulinum A2 str. Kyoto]
 gi|182668133|gb|EDT80112.1| glycyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226842596|gb|ACO85262.1| glycine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 463

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 120/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N            LG+    +R        D S
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFNYWKDYCWNFLINLGINKESIRF------RDHS 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                         E + + +  S    +  +            +  
Sbjct: 268 QE-------------------------ELSHYSNATSDIEFLFPFGWGELWGVADRTDFD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E+                           +     K+ Y        +GA RVV 
Sbjct: 303 LKKHMEHSGE---------------------DLNYLDPATKERYVPYCIEPSLGADRVVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        D  +++Y+ LSK   
Sbjct: 342 AFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LSDKSQEVYSMLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R T  +  +++ E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRDTMNQIRVNINELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEDKLE 462


>gi|302874941|ref|YP_003843574.1| histidyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577798|gb|ADL51810.1| histidyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 415

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 68/438 (15%), Positives = 133/438 (30%), Gaps = 52/438 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ Q  KG    LP        +   +R+     GA E+  P  +  +L++       D 
Sbjct: 1   MLVQAPKGTKDMLPGIAYKWQYLEEKMRKTAAEYGAREIRTPAFEHTELFIRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F          P   Y     FR E      
Sbjct: 61  VQKEMYTFEDKGGRSVTLKPEGTASAVRAFIEGSLFNDAQPTKMYYFTPVFRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R RE        F             +    LR+   LG+ ++ +   S        I
Sbjct: 118 KGRLREHHQFGVEVFGSQDASIDSE---LISLALRVLTELGVNNLELNINSIGCPNCRAI 174

Query: 203 GGDLSHEF------------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                 EF                +    ++   K+     I +   +  D +       
Sbjct: 175 YNAALKEFLKKNYDDLCPTCKSRFEKNPMRILDCKEEKCKIINASAPEILDYLDDECKSH 234

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-FGTKYSLPMSATF---KG 304
                             D   +      RG++     +F      +++     +     
Sbjct: 235 FEA-------LKAYLTAMDIKYKINPRIVRGLDYYTKTVFEILNNNFTVCGGGRYDNLIN 287

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +G+G  R++  + ES+           +       + I A     +  
Sbjct: 288 QVGGPSMPAVG-FGMGMERLILTLEESN---------IEIPRTPYIDLYIGAMGDSSKIE 337

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   L K+G     D M + + +Q   A+ +     +I+G   ++  KV++K    G
Sbjct: 338 SLKLAYNLRKLGLKCEIDHMNKSVKAQMKYANKIDASYTLILGDDELATKKVKLKRMSDG 397

Query: 425 IREDMSLEE---VINYAS 439
            + +++LE+   +++   
Sbjct: 398 EQLEINLEDYDKIVSLVK 415


>gi|148992030|ref|ZP_01821804.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|149011982|ref|ZP_01833130.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|149020031|ref|ZP_01835005.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168489187|ref|ZP_02713386.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147763937|gb|EDK70870.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|147929079|gb|EDK80090.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|147930709|gb|EDK81690.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|183572296|gb|EDT92824.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332071558|gb|EGI82051.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 429

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFATKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|68535685|ref|YP_250390.1| glycyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|68263284|emb|CAI36772.1| glycyl-tRNA synthetase [Corynebacterium jeikeium K411]
          Length = 459

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 116/350 (33%), Gaps = 41/350 (11%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + D+     +   T + + T+       S +  PF   Q+   FR+E+ P   + R+RE
Sbjct: 148 PVDDKEGLHYLRPETAQGIFTNFKNVMTTSRQKPPFGIAQVGKSFRNEITPGNFIFRTRE 207

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F + P   +  +        + +  LG+    +R    P             
Sbjct: 208 FEQMEMEFF-VKPGEDEEWHQYWIDDRHQWYIDLGINPDNLRLYEHP------------- 253

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E     SK  +D                             +     +  F      
Sbjct: 254 --KEKLSHYSKRTVDVEYAFHFNGSKWGELEGVANRTDYDLRVHSEGSGEDLSFYDQTTE 311

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +R     IE       G      M A    A  ++      + G    R V         
Sbjct: 312 ERWIPYTIEPA--AGLG----RAMMAFLVDAYTEEEVP--NAKGGTDTRTV--------- 354

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFA 393
              +     +AP KI+++ + +  +      EKI  +L   G  +V +D  G  IG ++ 
Sbjct: 355 ---LKLDRRLAPVKIAVLPL-SKKESLTPTAEKIAGQLR--GFWNVDYDTSGA-IGRRYR 407

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D +G P  V V    + D+ V ++ R T  +E + +E++ +Y + R +
Sbjct: 408 RQDEIGTPFCVTVDFDTLEDNAVTVRERDTMEQERIKIEDLQSYFAERLA 457


>gi|69247503|ref|ZP_00604373.1| Seryl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257878632|ref|ZP_05658285.1| seryl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257881297|ref|ZP_05660950.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257890514|ref|ZP_05670167.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257893090|ref|ZP_05672743.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258615286|ref|ZP_05713056.1| seryl-tRNA synthetase [Enterococcus faecium DO]
 gi|260558212|ref|ZP_05830408.1| seryl-tRNA synthetase [Enterococcus faecium C68]
 gi|293563863|ref|ZP_06678294.1| seryl-tRNA synthetase [Enterococcus faecium E1162]
 gi|293569174|ref|ZP_06680480.1| seryl-tRNA synthetase [Enterococcus faecium E1071]
 gi|294623744|ref|ZP_06702572.1| seryl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314940146|ref|ZP_07847326.1| seryl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314943022|ref|ZP_07849826.1| seryl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948140|ref|ZP_07851536.1| seryl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314953446|ref|ZP_07856364.1| seryl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314993814|ref|ZP_07859151.1| seryl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314998160|ref|ZP_07863042.1| seryl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68194828|gb|EAN09303.1| Seryl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257812860|gb|EEV41618.1| seryl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257816955|gb|EEV44283.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257826874|gb|EEV53500.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257829469|gb|EEV56076.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260075386|gb|EEW63692.1| seryl-tRNA synthetase [Enterococcus faecium C68]
 gi|291588143|gb|EFF19985.1| seryl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291596698|gb|EFF27921.1| seryl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291604174|gb|EFF33677.1| seryl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313587872|gb|EFR66717.1| seryl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313591737|gb|EFR70582.1| seryl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313594549|gb|EFR73394.1| seryl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313598222|gb|EFR77067.1| seryl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313640651|gb|EFS05231.1| seryl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645394|gb|EFS09974.1| seryl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 423

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 222 --ENTDLTLIPTAEVPLTNYYNDEILDGADLPIYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DVEHSYEELEKMTADAEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D         
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYTH 379


>gi|81301072|ref|YP_401280.1| histidyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|123741727|sp|Q31KX6|SYH_SYNE7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81169953|gb|ABB58293.1| histidyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 435

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 140/450 (31%), Gaps = 62/450 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +   L+    G   D  GK
Sbjct: 5   QALRGTRDILPPETQVWQWIEQTAREILGRAAVQEVRTPIFEQTALFERGIGEATDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR D+++   P         +  H  + +      +     FR E RP+ G  R
Sbjct: 65  EMYSFRDRGDRSLTLRPEGTAGTVRAYIEHGLASQGGVQRLWYTGPMFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +            +I   LGLK++ +   S    GD S    
Sbjct: 122 QRQFHQLGLELLGTADARADAE---AIALATQILQALGLKNLRLDLNS---VGDAS---- 171

Query: 212 VLADTGETQVFCSKDFMDFPIP---SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                   +    +  +D+  P     + D  D +  N +    +      + V      
Sbjct: 172 -------DRAAYRQALVDYLTPYAADLDPDSRDRLERNPLRILDSKDERTQAIVAEAPSL 224

Query: 269 -DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV-VA 326
            D L E  R     ++   + + G  Y L      +G D    Y    ++ I +  +   
Sbjct: 225 HDYLSERSRQLFEQVQ-QLLTHLGIDYRLEPKL-VRGLD----YYTHTAFEIISSDLGAQ 278

Query: 327 AVIESSHDGKGII------------WPD-------------SVAPFKISLINIKAHDQVC 361
           A +       G++            W               +V P  +    +     + 
Sbjct: 279 ATVCGGGRYDGLVSQLGGPETPAVGWAMGLERLVLLLQQGQAVPPATLDFYLVSRG-AIA 337

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 +  +L   G  V  D  G   G QF  AD  G    +++G       +V +K  
Sbjct: 338 EGQALILAQKLRSAGFGVELDLSGSAFGKQFKRADRSGAIACLVLGDAEAEQGQVNLKWL 397

Query: 422 LTGIREDMSLEEVI---NYASHRFSNNRPV 448
            +G ++ +   E++   ++   R    R V
Sbjct: 398 QSGEQQTLDQSELLQDSDHWRSRLQAARTV 427


>gi|153938880|ref|YP_001392872.1| glycyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|152934776|gb|ABS40274.1| glycine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320849|gb|ADG01227.1| glycine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 463

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 120/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N            LG+    +R        D S
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFNYWKDYCWNFLINLGINKENIRF------RDHS 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                         E + + +  S    +  +            +  
Sbjct: 268 QE-------------------------ELSHYSNATSDIEFLFPFGWGELWGVADRTDFD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E+                           +     K+ Y        +GA RVV 
Sbjct: 303 LKKHMEHSGE---------------------DLNYLDPTTKERYVPYCIEPSLGADRVVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        D  +++Y+ LSK   
Sbjct: 342 AFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LSDKSQEVYSMLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R T  +  +++ E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRDTMNQIRVNINELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEDKLE 462


>gi|307710978|ref|ZP_07647401.1| histidyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617218|gb|EFN96395.1| histidyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 426

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 140/446 (31%), Gaps = 61/446 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +             RG++     IF F     G   ++     
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +G+  P   A   + +  +    
Sbjct: 288 YDGLVSYFGGPETAGFG-FGLGVERLLLIL-----EKQGVTLPIENA-LDVYIAVLGQGA 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            V      ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +
Sbjct: 341 NV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVTV 397

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K+  T     +SLE +    S  F  
Sbjct: 398 KNNQTREEVQVSLETISQNFSEIFEK 423


>gi|291524968|emb|CBK90555.1| glycyl-tRNA synthetase, dimeric type [Eubacterium rectale DSM
           17629]
          Length = 465

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 121/373 (32%), Gaps = 84/373 (22%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F   P      +      Y R F R     LG+K   MR      
Sbjct: 214 FTFRTREFEQMELEFF-CEPGTDLEWFK-----YWRCFCRDWLISLGIKEDEMRLRD--- 264

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                       D  E   +                          +             
Sbjct: 265 -----------HDPAELAFYS---------KGTTDIEFLFPFGWGELWGIADRTDYDLGR 304

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           H E     L                              F     + +   +    +GA 
Sbjct: 305 HQEVSGQDLTY----------------------------FDDQKNEKYLPYVIEPSLGAD 336

Query: 323 RVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           RVV A + +++D + I             +  ++AP KI ++ +        ++ EK++A
Sbjct: 337 RVVLAFLCAAYDEEDIGTPEKPDVRTVFHFHPALAPVKIGVLPLSKK---LNESAEKVFA 393

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +LSK   +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E ++
Sbjct: 394 QLSKT-YNCEYDDRG-TIGKRYRRQDEIGTPFCVTYDFDSEEDHCVTVRDRDTMEQERIA 451

Query: 431 LEEVINYASHRFS 443
           ++E+  Y + +F 
Sbjct: 452 IDELDAYFAKKFE 464


>gi|213966123|ref|ZP_03394310.1| histidyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951221|gb|EEB62616.1| histidyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 427

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 133/436 (30%), Gaps = 47/436 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P   +  + V    +      G   + +P  +   L+        D   
Sbjct: 13  FSAPKGVPDYVPPVSREFEAVRNSFQHRARLAGYEHIELPIFEETGLFARGVGESTDVVT 72

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 73  KEMYTFADRGDRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLSYAGPFFRYE-RPQAG-- 129

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  +GL+   +   S           
Sbjct: 130 RYRQLQQVGVEAIGIDDPALDAEVIALADA---CFRGIGLEGFRLELTSLGDNTCRSEYR 186

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               EF+      E     +       +  +  +  ++++   ++    +  A +     
Sbjct: 187 AKLQEFLFDLPLDEETRHRANINPLRVLDDKRPEMQEMLADAPLMLDHLSDSARSHFEAV 246

Query: 265 EKLFDSL---PENKRVSARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYV 312
             L D +           RG++              G +  +     + G  A      +
Sbjct: 247 TGLLDDMRVPYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQEL 306

Query: 313 QMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
               +G+G  R + A+  ES     G           + +  +   ++       +I  +
Sbjct: 307 SGIGFGLGVDRALLALEAESKQASDGRR---------VDVYGVALGEEAAHAMALQI-NK 356

Query: 372 LSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           L + G            G +        AD  G    +++G   ++  +V++K+  +  +
Sbjct: 357 LRQAGIRA-----DMSYGGRGLKGAMKGADRAGARFALVLGESELAAGEVQLKNLESHEQ 411

Query: 427 EDMSLEEVINYASHRF 442
             ++L+ ++     R 
Sbjct: 412 HAVALDALVQELQSRI 427


>gi|194432032|ref|ZP_03064321.1| histidyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194419561|gb|EDX35641.1| histidyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|332089679|gb|EGI94780.1| histidyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 424

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETTIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|296140437|ref|YP_003647680.1| glycyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296028571|gb|ADG79341.1| glycyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 478

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 120/383 (31%), Gaps = 76/383 (19%)

Query: 82  ESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             G++       M+       +   +    +   T + +  +       + +  PF   Q
Sbjct: 147 TKGQWTEPRDFNMMLKTYLGPIESEDGLHYLRPETAQGIFVNFKNVMTTARKKPPFGIGQ 206

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           I   FR+E+ P   + R+REF   +                                   
Sbjct: 207 IGKSFRNEITPGNFIFRTREFEQMEM---------------------------------- 232

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                         EF V    GE +    + ++D+ +           +L         
Sbjct: 233 --------------EFFVK--PGEDET-WHQYWIDYRLQWYTDLGIKPENLRLFTHPQEK 275

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYV 312
               +    + +       ++     GI     F  GT  K+S      F    G+ +  
Sbjct: 276 LSHYSKGTVDIEYRFEFAGSEFGELEGIANRTDFDLGTHSKHSGESLEYFDQQSGERYIP 335

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R + A +  ++  +              +     +AP K +++ + + D+
Sbjct: 336 YVIEPAAGLTRSLMAFLVDAYTEEEVPKANGGTDTRVVLKLDRRLAPVKAAVLPL-SRDE 394

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++ A L +   +V +DD  + IG ++   D +G P  + V    + D  V ++
Sbjct: 395 KLSPKARELAADLRQFW-NVEFDD-AQGIGKRYRRQDEIGTPFCITVDFDTLEDDSVTVR 452

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  +E + L EV  Y + R 
Sbjct: 453 ERDTMAQERVPLAEVREYLAARL 475


>gi|322381604|ref|ZP_08055577.1| hypothetical protein PL1_0791 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154440|gb|EFX46743.1| hypothetical protein PL1_0791 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 456

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 120/361 (33%), Gaps = 63/361 (17%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    +   +   +   P   + +   F++      + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTHQGVTASSTNEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F    E  +      + SY R F R     LG+K   MR      
Sbjct: 208 FTFRTREFEQMELEFFCKPGEDLE------WFSYWREFCRNWLLSLGMKEANMRL-RDHD 260

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             +LSH     +D          ++       E     D    + I     +        
Sbjct: 261 KEELSHYSNATSDI---------EYKFPFGWGELWGIADRTDFDLIRHMEHSGEDFHF-- 309

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           H+++  +         + G +   + +    Y        +  DG D    +        
Sbjct: 310 HDQETGEKYVPYCIEPSLGADRVTLAFLINAYEE------QELDGGDSRNVLH------- 356

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                            +  ++AP K ++  +        ++  K++  LS+    V +D
Sbjct: 357 -----------------FHPAIAPVKAAIFPLSKK---LAESAGKVFRDLSQ-DFMVEYD 395

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D G  IG ++   D +G P  +      V D +V ++ R T  ++ M + E+  +   + 
Sbjct: 396 DAG-SIGKRYRRQDEIGTPFCITYDFDSVEDGQVTVRDRDTMQQQRMPISELKAFLESKI 454

Query: 443 S 443
            
Sbjct: 455 K 455


>gi|171778546|ref|ZP_02919673.1| hypothetical protein STRINF_00525 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282769|gb|EDT48193.1| hypothetical protein STRINF_00525 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 425

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 135/449 (30%), Gaps = 67/449 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        + A+ RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPSESAKWQYIEAVARETFKKYNYSEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS +++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F  LG+K + +   +       
Sbjct: 120 AG--RLREFHQVGVECFGSANPATDVETIAM--AYQ-LFQTLGIKDVTLHLNTLGSAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPMRDKLSADSQRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLP--------- 297
                            +  +          RG++     IF F T              
Sbjct: 235 AHFDAVREML-------ETLNIPYVIDTNMVRGLDYYNHTIFEFITTVDKSELTICAGGR 287

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKISLINIK 355
             +  +  DG +        G+  +           D +GI  P    +  +   L    
Sbjct: 288 YDSLVEYFDGPETPGFGFGLGLERL-------LLILDKQGIELPVEKEMDAYIAVL---- 336

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              Q       ++   +   G     D +G +I +QF  AD       + +G   +   +
Sbjct: 337 --GQGANIKALELVQAIRNQGFSAERDYLGRKIKAQFKSADAFNAKTVITLGESEIEAGQ 394

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V +K+  T     +S  ++    +   + 
Sbjct: 395 VTVKNNKTREEVSVSFADIETNFAEILAK 423


>gi|168183598|ref|ZP_02618262.1| glycine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796979|ref|YP_002864531.1| glycyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|182673186|gb|EDT85147.1| glycine--tRNA ligase [Clostridium botulinum Bf]
 gi|229262061|gb|ACQ53094.1| glycine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 463

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 120/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N            LG+    +R        D S
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFNYWKDYCWNFLINLGINKENIRF------RDHS 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                         E + + +  S    +  +            +  
Sbjct: 268 QE-------------------------ELSHYSNATSDIEFLFPFGWGELWGVADRTDFD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E+                           +     K+ Y        +GA RVV 
Sbjct: 303 LKKHMEHSGE---------------------DLNYLDPTTKERYVPYCIEPSLGADRVVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        D  +++Y+ LSK   
Sbjct: 342 AFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LSDKSQEVYSMLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R T  +  +++ E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRDTMNQIRVNINELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEDKLE 462


>gi|256384387|gb|ACU78957.1| serine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385219|gb|ACU79788.1| serine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455663|gb|ADH21898.1| serine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 422

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 104/312 (33%), Gaps = 70/312 (22%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K +  +  I+ +   +    E+  P + +    + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRAIADILLKRHEKHNYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVG--- 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 225 --EQYLIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +     + P+ S +    +      + +   L    +   SG IG          A T
Sbjct: 283 KVELVKI-VHPDQSMNELELLVKDAEDVLNMFDLPYRVVELCSGDIGFSS-------AKT 334

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            + +V+  +      I S +                                        
Sbjct: 335 YDLEVWFPEQNKYREISSCSNC-------------------------------------- 356

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDG 335
                      F      +  +   FK  DGK   V  +   G+   R++AA++E+  DG
Sbjct: 357 ---------TDFQ-----ARNIQTRFKDKDGKIKLVHTLNGSGVAVDRLIAAILENYWDG 402

Query: 336 KGIIWPDSVAPF 347
           + ++ P  + P+
Sbjct: 403 EKLVLPTILRPY 414


>gi|323156168|gb|EFZ42327.1| histidyl-tRNA synthetase [Escherichia coli EPECa14]
          Length = 424

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTLLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|261420842|ref|YP_003254524.1| glycyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319768511|ref|YP_004134012.1| glycyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261377299|gb|ACX80042.1| glycyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317113377|gb|ADU95869.1| glycyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 460

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 116/356 (32%), Gaps = 55/356 (15%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++      + LPF   QI   FR+E+ P  
Sbjct: 152 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E  +      ++ Y + F +  L S+ M+ ++  +     
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELQ------WLEYWKQFCKEWLLSLGMKEDNIRLRDHAK 265

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        +     FP            +   +             +  E  
Sbjct: 266 EELSHYSN------ATTDIEYHFPFGWGELWGIASRTDYDLKRHMEYSGEDFHYLDQETN 319

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              +P     S            G  + +L         +  +          G  R V 
Sbjct: 320 ERYIPYCIEPS-----------LGADRVTLAFMIDAYDEEELED---------GTTRTVM 359

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +              ++AP+K +++ +        D   +IY  L+K    V +D+ G 
Sbjct: 360 HL------------HPALAPYKAAVLPLSKK---LADGARRIYEELAKH-FMVDYDETG- 402

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            IG ++   D +G P  +    +   D +V ++ R T  +  + + E+  +   + 
Sbjct: 403 SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQVRLPIGELKAFLEEKI 458


>gi|253567819|ref|ZP_04845230.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251841892|gb|EES69972.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 82

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%)

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L         DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  
Sbjct: 5   LKMHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKY 64

Query: 432 EEVINYASHRFSN 444
           EE     +    N
Sbjct: 65  EEFAKILNEEVQN 77


>gi|167823868|ref|ZP_02455339.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|226197114|ref|ZP_03792691.1| histidine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|254198372|ref|ZP_04904794.1| histidyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|169655113|gb|EDS87806.1| histidyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|225930493|gb|EEH26503.1| histidine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
          Length = 446

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 136/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N +++   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFVDALNGESLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYLGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +              +    + L D    
Sbjct: 182 AHRVELIKYLEQHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRA 241

Query: 274 NKRVSARGIEVGH-IFYFGTK-------YSLPMSATFKGADGKD---------------- 309
           +     R ++  +  F    +       Y+L +        G                  
Sbjct: 242 HFDGLQRLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E             + P +  + +  +   D   R+  
Sbjct: 302 GGKPTAACGWAMGVERILELLKEEH-----------LVPEQEGVDVYVVHQGD-AAREQA 349

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
             +  RL   G DV      +  G+ F      AD  G    VI G   V++  V +K  
Sbjct: 350 FIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVANGTVSVKPL 409

Query: 421 RLTG------IREDMSLEEVINYASH 440
           R TG      +++ + +E +  +  +
Sbjct: 410 RGTGAEGEKNVQQSVPVESLTEFLIN 435


>gi|313886005|ref|ZP_07819743.1| glycine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924535|gb|EFR35306.1| glycine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 517

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 75/509 (14%), Positives = 156/509 (30%), Gaps = 101/509 (19%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMS 70
           +I SH      G +   S        +Y +   G +  +N+     E   R     + + 
Sbjct: 10  KIVSHCK--EYGFVFPSSDIYDGLSAVYDYGQNGVELKNNIKRYWWEAMTRLHPNVVGID 67

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                  D+W  SG  D++      L D  D    Y      +   I +   K+ + +  
Sbjct: 68  SSIFMHPDIWRASGHIDAFND---PLIDNKDSKKRYRADV-LIEDQIAKIEGKAQKEIDK 123

Query: 131 TFYQIQLKFRDE------------------------------------------------ 142
              +    F DE                                                
Sbjct: 124 AHKRFGDSF-DESLYRTTNSRVKGYLDQAEALRQRMAKALNDNDLTELRQIIVDEKIVCP 182

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSK------HSYNKMFVSYLRIFH--RLGLKSIP 194
           +         R+F +  A     T EG+        +   +FV+YL +    R+ L    
Sbjct: 183 ISGTTNWTEVRQFNLMFATEVGSTAEGASTIYLRPETAQGIFVNYLNVQKTGRMKLPFGI 242

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            +     IG    +E +        + F   +   F  P    ++ +      +   +  
Sbjct: 243 AQ-----IGKAFRNEIVARQFIFRMREFEQMEMQYFVQPGTELEWFEYWKKLRLHWHYAL 297

Query: 255 PYAA-TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMS-------ATF 302
            +       H+                 +  G+    G    T + L            +
Sbjct: 298 GFPQSDYRYHDHDKLAHYANAATDIEYLMPFGYKEVEGIHSRTDFDLSRHEEFSGKKLRY 357

Query: 303 KGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLI 352
              D K+ Y   +    IG  R+  +V+  S+  +          +  P ++AP K++++
Sbjct: 358 YDPDTKESYVPYVVETSIGVDRMFLSVLCGSYKEEQTENGETRVVLSLPPALAPVKLAVL 417

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +   D    +   ++  RL  +     +D+  + IG ++   D +G P  + V  + + 
Sbjct: 418 PLVRKD-GLDEKAHEVV-RLLHLDFTCQYDE-KDSIGKRYRRQDAIGTPYCITVDHQTLE 474

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D+ V ++ R T  +E +++  + +  + R
Sbjct: 475 DNTVTLRDRDTMQQERIAISALHDLIAER 503


>gi|205353621|ref|YP_002227422.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|229558728|sp|B5RCZ1|SYH_SALG2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|205273402|emb|CAR38377.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628721|gb|EGE35064.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 424

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 145/448 (32%), Gaps = 69/448 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMKDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------- 204
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVSLELNSIGSLEARANY 177

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D    F+        +    + + +    + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               KL D+        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        P+ +A   +  I + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVAAGAQTQSAAMT 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDS 414
           +  RL             E  G +             FA AD     + +++G   V+D 
Sbjct: 347 LAERL-----------RDEMPGVKLMTNHGGGNFKKQFARADKWDARIALVLGESEVADG 395

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V +K   +G +  ++ + V  +     
Sbjct: 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|309802149|ref|ZP_07696258.1| glycine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|308221229|gb|EFO77532.1| glycine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 491

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 81/492 (16%), Positives = 161/492 (32%), Gaps = 77/492 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +    +WV SG    +     E L    R+    +     E+   
Sbjct: 54  MVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K              +    E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 KLPENGLKD-----IVCPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGI 168

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
           +             +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 169 F-------------VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F  P  + ++                    +  H E   + L    +   R +++ + 
Sbjct: 216 EFFVAPGTDEEWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T + L   A   G D        G+ +   +     G  R + 
Sbjct: 273 FGFQGSDWGELEGVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           A +  ++D                +     +AP K +++ +    ++     + + A L 
Sbjct: 333 AFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQNLAADLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +E ++L++
Sbjct: 392 QHDWMIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQERVALDK 450

Query: 434 VINYASHRFSNN 445
           V +Y + R    
Sbjct: 451 VADYVAARIGEK 462


>gi|262274786|ref|ZP_06052597.1| histidyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262221349|gb|EEY72663.1| histidyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 422

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 148/438 (33%), Gaps = 50/438 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGTVKDVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIENGLLYNQE-QRLWYLGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
            R+F       F L           M     R++ +LG+    +R E   IG   +    
Sbjct: 122 YRQFHQFGVEVFGLNGPDVDAELIMM---TARLWRKLGI-YEHVRLELNSIGSLEARANY 177

Query: 209 -----EFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                +F++  +         +   +    + ++N D   ++S    +  +    +    
Sbjct: 178 REALVDFLMQHEAILDDDCKRRMHTNPLRVLDTKNPDIQAVLSDAPKLSAYLDEDSKQHF 237

Query: 262 VHNEKLFDSLPENKRV---SARGIEVG--HIFYFGTKYSLPMSATFKGA----------D 306
               +L D+      +     RG++     +F + T  SL    T  G            
Sbjct: 238 AGLCELLDAAGIQYTINEKLVRGLDYYNRTVFEWITD-SLGAQGTVCGGGRYDGLVEQLG 296

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK        + +G  R+V  ++  +                   + +    +    A  
Sbjct: 297 GKATPAV--GFAMGVERLV--LLMETLALDETR--------PAVDVYMVTAGEGTLIAGM 344

Query: 367 KIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           K+   L +   G  V     G     QF  AD +G  + +++G   V++++V  K    G
Sbjct: 345 KLAEALREQVPGLRVMTHFGGGNFKKQFKRADKVGASVALVLGEDEVANNQVTFKDLKGG 404

Query: 425 IREDMSLEEVINYASHRF 442
            +  +S +EV +  + R 
Sbjct: 405 EQLTISQDEVADKLAQRV 422


>gi|215487864|ref|YP_002330295.1| histidyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|312965430|ref|ZP_07779662.1| histidyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|331648211|ref|ZP_08349301.1| histidine--tRNA ligase [Escherichia coli M605]
 gi|254782329|sp|B7UGW0|SYH_ECO27 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|215265936|emb|CAS10345.1| histidyl tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|281179568|dbj|BAI55898.1| histidyl-tRNA synthetase [Escherichia coli SE15]
 gi|312289850|gb|EFR17738.1| histidyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|320662798|gb|EFX30130.1| histidyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|330912289|gb|EGH40799.1| histidyl-tRNA synthetase [Escherichia coli AA86]
 gi|331043071|gb|EGI15211.1| histidine--tRNA ligase [Escherichia coli M605]
          Length = 424

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQVLLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|168484053|ref|ZP_02709005.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|172042675|gb|EDT50721.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|332198735|gb|EGJ12817.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
          Length = 429

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|323699396|ref|ZP_08111308.1| histidyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323459328|gb|EGB15193.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 413

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 145/433 (33%), Gaps = 58/433 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG     P        + A  RE  +R G  E+  P L+  +L+ +S     D  GKEM 
Sbjct: 8   KGFADLFPEEAAKYTFMEACAREIFSRYGFGELRTPILEKTELFQKSIGEDTDVVGKEMF 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVMRSR 153
              DR D+++   P     +   F    K+Y+      F+     FR E RP+ G  R R
Sbjct: 68  TFPDRKDRSLTMRPEATAGVVRAFI-ESKTYQPGNISKFFTFGPMFRYE-RPQKG--RQR 123

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLS 207
           +F   +A  F      +      M  ++LR   R+GL+ + +   S       P      
Sbjct: 124 QFHQINAECFGADEPQADAELILMLTAFLR---RIGLRDLTVELNSLGCHECRPAYKQAL 180

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            ++    D      FC                  + +   +V+                 
Sbjct: 181 VDYYHAQDKA---KFCEDCQRRMETNPLRVLDCKVPTCKELVKDAPVITDHLCPDCRAHF 237

Query: 268 FDSL---------PENKRVSARGIE--VGHIFY-----FGTKYSLPMSATFKG----ADG 307
            D                   RG++  V   F       G + S+     + G     DG
Sbjct: 238 ADVRAVLDGAGVAYVLNPRLVRGLDYYVRTCFEVTSNDIGAQTSVAGGGRYDGLIRSLDG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQVCRDACE 366
            D      + G   M  +A ++       G + P+  AP F ++++  +A ++       
Sbjct: 298 PDCPGTGFACG---MERLALLL-------GDVAPE--APDFYLAVVAPEAANEAML---- 341

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                L   G        G  + S+   A+  G    +I+G   ++D  V +K    G R
Sbjct: 342 -FAQALRNKGLRGEVSFAGGSMKSRMRAANKSGAGTCLILGEAELADRTVTVKDMA-GNR 399

Query: 427 EDMSLEEVINYAS 439
           E  +L+  +  AS
Sbjct: 400 EQETLDRALYLAS 412


>gi|307707792|ref|ZP_07644270.1| histidyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616174|gb|EFN95369.1| histidyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 426

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 140/446 (31%), Gaps = 61/446 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +             RG++     IF F     G   ++     
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +G+  P   A   + +  +    
Sbjct: 288 YDGLVSYFGGPETAGFG-FGLGVERLLLIL-----EKQGVALPIENA-LDVYIAVLGDGA 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            V      ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +
Sbjct: 341 NV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVESGQVTV 397

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K+  T     +SLE +    S  F  
Sbjct: 398 KNNQTREEVQVSLETISQNFSEIFEK 423


>gi|331673969|ref|ZP_08374732.1| histidine--tRNA ligase [Escherichia coli TA280]
 gi|331069242|gb|EGI40634.1| histidine--tRNA ligase [Escherichia coli TA280]
          Length = 424

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNYGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|149921717|ref|ZP_01910165.1| glycyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
 gi|149817455|gb|EDM76927.1| glycyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
          Length = 508

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 117/360 (32%), Gaps = 58/360 (16%)

Query: 100 NDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            + A+   P T + +              +PF   Q+   FR+E+     + RS EF   
Sbjct: 195 EESAVYLRPETAQGMFVQFLNVQQSMAAKIPFGIAQMGKSFRNEVTVEHFIFRSCEFEQM 254

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +   F   P   +        + ++ +  +GL +  +R           HE   LA    
Sbjct: 255 EMEWF-CEPGTGREWLEYWKETRMKWWQSIGLSADKLRL--------REHESSELA---- 301

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                    +++  P    + + I S  +      A  +    V+ +   D+        
Sbjct: 302 -HYSDGTFDVEYDFPWGWDELEGIASRTNYDLNAHAEGSNKKLVYTDPEKDNPE------ 354

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---- 334
                                    G  G  +   +     GA R + AV+ +++D    
Sbjct: 355 ------------------------TGKKGWRYVPHVVEPAAGATRGMLAVLCAAYDEEPG 390

Query: 335 ---GKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              GKG    +     +AP K +++ +    Q   +   KI       G +   D M   
Sbjct: 391 DESGKGARTVLRLHPRLAPVKAAVLPLVRK-QGMPETARKIADAFFAAGVNAKLD-MQHA 448

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           IG ++A  D +G P  + V  +   D  V I++R    +E + +E  ++         R 
Sbjct: 449 IGRRYARHDEIGTPYCITVDGQTAEDDTVTIRYRDDRRQERIKVEAAVDEVRRALREGRE 508


>gi|238854670|ref|ZP_04645000.1| histidine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260664387|ref|ZP_05865239.1| histidyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282932939|ref|ZP_06338336.1| histidine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313472207|ref|ZP_07812699.1| histidine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238832460|gb|EEQ24767.1| histidine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239529590|gb|EEQ68591.1| histidine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260561452|gb|EEX27424.1| histidyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281302974|gb|EFA95179.1| histidine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 426

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 146/456 (32%), Gaps = 79/456 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      + V  I R+   +    E+  P+ +S +++  S     D   K
Sbjct: 4   QKPKGTVDILPDVSGNWEKVEQIARDFFKQANYREIRTPSFESYEVFSRSSGETSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDELRPR 146
           EM    D+  + +   P   E    + RS++++         PF  Y I+  FR E RP+
Sbjct: 64  EMYDFNDKGGRHIALRP---EGTAGVVRSYVENKMYGPDVVKPFNVYYIESMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF      SF      +      M    L    +LG+K+  +   S      L
Sbjct: 120 AG--RQREFHQIGCESFGSNNPLADIETIMMGNDLLN---KLGVKNFELHINS------L 168

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E +  A       + +         S+     + + +    E+    +   +    + 
Sbjct: 169 GNEVVRKAYHDALINYFTPVKDQLSEDSQRRLMKNPLRILDSKEEQDKQFLPDAPRIVDY 228

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLP--------------MSATFKGAD------ 306
           L D    N +     ++       G KY L                       D      
Sbjct: 229 LDDESKANFKFITDALD-----KLGIKYVLDDDLVRGLDYYTGVIFEFMVADTDLWASPT 283

Query: 307 -----GKDHYVQMGSYGIGA--------MRVVAAVIE----SSHDGKGIIWPDSVAPFKI 349
                G+ +++     G              +  V+E          GI           
Sbjct: 284 TVLGGGRYNHLVEEFGGPETPAVGFGIGEERLMLVLEKQNPELFADSGI---------DF 334

Query: 350 SLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            + NI         +   K    L   G  V +D   +++ +QF  AD +     + +G 
Sbjct: 335 FITNIGEGTALKSVELARK----LRAQGQRVQYDVDQKKLKNQFKKADRVHAEFVITLGE 390

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           K +++  V IK    G +  +S +E +N  S    N
Sbjct: 391 KELAEGNVSIKRLADGKQIKLSWDE-MNNISEAMKN 425


>gi|121536069|ref|ZP_01667851.1| seryl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305351|gb|EAX46311.1| seryl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 297

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +   G +    +   + +      G  E   P + +AD  V +G+   + ++M +L   
Sbjct: 38  FYKGAGARLERALINFMLDLHTREHGYTEFFPPFIVNADSMVGTGQLPKFAQDMFKL--- 94

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T++ R  I   ++LP  +      FR E     R   G++R  +F
Sbjct: 95  EGLDYYLIPTAEVPVTNLHRQEILDAKDLPLYYAAYSACFRAEAGAAGRDTRGLIRQHQF 154

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F L PE S +   K+  +  R+   LGL    +   +G +G   +     E  
Sbjct: 155 NKVELVKFTL-PEESYNELEKLTNNAERVLQLLGLPYRVVLLCTGDMGFASAKTYDLEVW 213

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + +     ++    +F DF     +  F
Sbjct: 214 LPSFNRYREISSCSNFEDFQARRADIKF 241


>gi|328952294|ref|YP_004369628.1| Histidyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328452618|gb|AEB08447.1| Histidyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 422

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 139/436 (31%), Gaps = 46/436 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  +G+   LP        +  + R      G  E+ +P L+  +L+  S     D 
Sbjct: 1   MI-KAVRGMKDLLPPETARWHYLETVARAVFVSYGFQEIRLPLLERTELFSRSIGASTDI 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP---FTFYQIQLKFRDELRP 145
             KEM    DR  ++M   P   E    + R+ I++  +       ++ +   FR E RP
Sbjct: 60  VEKEMYTFLDRRGESMTLRP---EATASVVRAFIENRLDQGAEVKKYFTMGPMFRYE-RP 115

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL---GLKSIPMRAESGPI 202
           + G  R R+F   +  +              + +  + IF RL   GL+ +         
Sbjct: 116 QKG--RYRQFHQINCEAIGGEAPELDAE---LILLLMEIFRRLKVTGLELVVNSLGCPQC 170

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT--APYAATS 260
                 E   L   G   +           P    D         + +  T         
Sbjct: 171 RPAYLMELTALFARGLRDLCPDCQRRSAANPLRVFDCKSKTCQELLAQVPTISDKLCDNC 230

Query: 261 DVHNEK------LFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--A 305
             H  +       F           RG++              G + ++     + G   
Sbjct: 231 QRHEARVLELLDRFQVPYRRNPRLVRGLDYYTRTAFEVVTTQLGAQDAVAGGGRYNGLIK 290

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           D     +    + IG  R+  A + S  D   +         +  L+ +    +  RD  
Sbjct: 291 DLGGPDLPAIGFAIGQERL--ATLLSQQDADLL---------QQPLLFVAVLGEAARDRA 339

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L   G     D     + +Q  +A+  G    +I+G + ++D +  +K    G 
Sbjct: 340 FELVQALRHQGYVADLDFTNRSLKAQMTMANRRGAAWVLILGDQELADGRAPLKDMRRGE 399

Query: 426 REDMSLEEVINYASHR 441
           +  +SL+ +    +  
Sbjct: 400 QHLVSLDTLPQILADL 415


>gi|15803037|ref|NP_289067.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15832630|ref|NP_311403.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|16130439|ref|NP_417009.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|26248878|ref|NP_754918.1| histidyl-tRNA synthetase [Escherichia coli CFT073]
 gi|89109320|ref|AP_003100.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|91211840|ref|YP_541826.1| histidyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110642679|ref|YP_670409.1| histidyl-tRNA synthetase [Escherichia coli 536]
 gi|117624743|ref|YP_853656.1| histidyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|157155202|ref|YP_001463836.1| histidyl-tRNA synthetase [Escherichia coli E24377A]
 gi|157161989|ref|YP_001459307.1| histidyl-tRNA synthetase [Escherichia coli HS]
 gi|168748427|ref|ZP_02773449.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168756286|ref|ZP_02781293.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|168761124|ref|ZP_02786131.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168768606|ref|ZP_02793613.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168773572|ref|ZP_02798579.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168778480|ref|ZP_02803487.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168787860|ref|ZP_02812867.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168798885|ref|ZP_02823892.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|170019203|ref|YP_001724157.1| histidyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|170082124|ref|YP_001731444.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170682103|ref|YP_001744702.1| histidyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188493703|ref|ZP_03000973.1| histidyl-tRNA synthetase [Escherichia coli 53638]
 gi|191167687|ref|ZP_03029496.1| histidyl-tRNA synthetase [Escherichia coli B7A]
 gi|191172621|ref|ZP_03034160.1| histidyl-tRNA synthetase [Escherichia coli F11]
 gi|193064075|ref|ZP_03045160.1| histidyl-tRNA synthetase [Escherichia coli E22]
 gi|193068437|ref|ZP_03049400.1| histidyl-tRNA synthetase [Escherichia coli E110019]
 gi|194427379|ref|ZP_03059929.1| histidyl-tRNA synthetase [Escherichia coli B171]
 gi|194437576|ref|ZP_03069672.1| histidyl-tRNA synthetase [Escherichia coli 101-1]
 gi|195936656|ref|ZP_03082038.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208808608|ref|ZP_03250945.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208813413|ref|ZP_03254742.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208819784|ref|ZP_03260104.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209398087|ref|YP_002271984.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217327485|ref|ZP_03443568.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218555039|ref|YP_002387952.1| histidyl-tRNA synthetase [Escherichia coli IAI1]
 gi|218559440|ref|YP_002392353.1| histidyl-tRNA synthetase [Escherichia coli S88]
 gi|218690634|ref|YP_002398846.1| histidyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218701024|ref|YP_002408653.1| histidyl-tRNA synthetase [Escherichia coli IAI39]
 gi|227887549|ref|ZP_04005354.1| histidine--tRNA ligase [Escherichia coli 83972]
 gi|237705024|ref|ZP_04535505.1| histidyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238901679|ref|YP_002927475.1| histidyl tRNA synthetase [Escherichia coli BW2952]
 gi|253772592|ref|YP_003035423.1| histidyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162488|ref|YP_003045596.1| histidyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|254794460|ref|YP_003079297.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|256021800|ref|ZP_05435665.1| histidyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|260845144|ref|YP_003222922.1| histidyl tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260856608|ref|YP_003230499.1| histidyl tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260869203|ref|YP_003235605.1| histidyl tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|261223054|ref|ZP_05937335.1| histidyl tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259395|ref|ZP_05951928.1| histidyl tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283735|ref|YP_003500553.1| Histidyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|293410928|ref|ZP_06654504.1| histidyl-tRNA synthetase [Escherichia coli B354]
 gi|293415779|ref|ZP_06658422.1| histidyl-tRNA synthetase [Escherichia coli B185]
 gi|297518016|ref|ZP_06936402.1| histidyl-tRNA synthetase [Escherichia coli OP50]
 gi|300817716|ref|ZP_07097931.1| histidyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300820816|ref|ZP_07100966.1| histidyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300904312|ref|ZP_07122169.1| histidyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300927123|ref|ZP_07142871.1| histidyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300930154|ref|ZP_07145575.1| histidyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300940235|ref|ZP_07154833.1| histidyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300981976|ref|ZP_07175822.1| histidyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300998070|ref|ZP_07181930.1| histidyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|301022374|ref|ZP_07186261.1| histidyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|301024746|ref|ZP_07188386.1| histidyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301047147|ref|ZP_07194242.1| histidyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|301302871|ref|ZP_07208999.1| histidyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|301330395|ref|ZP_07223037.1| histidyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|306814416|ref|ZP_07448578.1| histidyl-tRNA synthetase [Escherichia coli NC101]
 gi|307312491|ref|ZP_07592124.1| histidyl-tRNA synthetase [Escherichia coli W]
 gi|309794439|ref|ZP_07688862.1| histidyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|331658659|ref|ZP_08359603.1| histidine--tRNA ligase [Escherichia coli TA206]
 gi|331664077|ref|ZP_08364987.1| histidine--tRNA ligase [Escherichia coli TA143]
 gi|331678505|ref|ZP_08379180.1| histidine--tRNA ligase [Escherichia coli H591]
 gi|331684162|ref|ZP_08384758.1| histidine--tRNA ligase [Escherichia coli H299]
 gi|46397736|sp|P60906|SYH_ECOLI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397737|sp|P60907|SYH_ECOL6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397738|sp|P60908|SYH_ECO57 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123048980|sp|Q0TEX1|SYH_ECOL5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123387854|sp|Q1R8L9|SYH_ECOUT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227966|sp|A1AE52|SYH_ECOK1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166980045|sp|A7ZPV7|SYH_ECO24 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166980046|sp|A8A320|SYH_ECOHS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082294|sp|B1IWE7|SYH_ECOLC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226737070|sp|B7MHZ9|SYH_ECO45 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226737071|sp|B7NRG4|SYH_ECO7I RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226737072|sp|B7M7L8|SYH_ECO8A RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226737074|sp|B1LNG9|SYH_ECOSM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558670|sp|B5Z0Y3|SYH_ECO5E RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558671|sp|B1XAY9|SYH_ECODH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782331|sp|B7MYE9|SYH_ECO81 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|259511946|sp|C4ZX89|SYH_ECOBW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2781066|pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 gi|2781067|pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 gi|2781068|pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 gi|2781069|pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 gi|2781070|pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 gi|2781071|pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 gi|2781072|pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 gi|2781073|pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 gi|12516905|gb|AAG57624.1|AE005480_11 histidine tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|26109284|gb|AAN81486.1|AE016764_168 Histidyl-tRNA synthetase [Escherichia coli CFT073]
 gi|146372|gb|AAA03226.1| histidine-tRNA synthetase [Escherichia coli]
 gi|1788861|gb|AAC75567.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1805574|dbj|BAA16401.1| histidyl tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|13362846|dbj|BAB36799.1| histidine tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|91073414|gb|ABE08295.1| histidine tRNA synthetase [Escherichia coli UTI89]
 gi|110344271|gb|ABG70508.1| histidyl-tRNA synthetase [Escherichia coli 536]
 gi|115513867|gb|ABJ01942.1| histidyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|157067669|gb|ABV06924.1| histidyl-tRNA synthetase [Escherichia coli HS]
 gi|157077232|gb|ABV16940.1| histidyl-tRNA synthetase [Escherichia coli E24377A]
 gi|169754131|gb|ACA76830.1| histidyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|169889959|gb|ACB03666.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170519821|gb|ACB17999.1| histidyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|187770705|gb|EDU34549.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188017124|gb|EDU55246.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|188488902|gb|EDU64005.1| histidyl-tRNA synthetase [Escherichia coli 53638]
 gi|189003447|gb|EDU72433.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189356659|gb|EDU75078.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189362191|gb|EDU80610.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189368474|gb|EDU86890.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189372265|gb|EDU90681.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189378621|gb|EDU97037.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|190902286|gb|EDV62026.1| histidyl-tRNA synthetase [Escherichia coli B7A]
 gi|190907094|gb|EDV66694.1| histidyl-tRNA synthetase [Escherichia coli F11]
 gi|192929310|gb|EDV82919.1| histidyl-tRNA synthetase [Escherichia coli E22]
 gi|192958389|gb|EDV88829.1| histidyl-tRNA synthetase [Escherichia coli E110019]
 gi|194414700|gb|EDX30972.1| histidyl-tRNA synthetase [Escherichia coli B171]
 gi|194423382|gb|EDX39373.1| histidyl-tRNA synthetase [Escherichia coli 101-1]
 gi|208728409|gb|EDZ78010.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208734690|gb|EDZ83377.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208739907|gb|EDZ87589.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209159487|gb|ACI36920.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209763388|gb|ACI80006.1| histidine tRNA synthetase [Escherichia coli]
 gi|209763390|gb|ACI80007.1| histidine tRNA synthetase [Escherichia coli]
 gi|209763392|gb|ACI80008.1| histidine tRNA synthetase [Escherichia coli]
 gi|209763394|gb|ACI80009.1| histidine tRNA synthetase [Escherichia coli]
 gi|209763396|gb|ACI80010.1| histidine tRNA synthetase [Escherichia coli]
 gi|217319852|gb|EEC28277.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218361807|emb|CAQ99406.1| histidyl tRNA synthetase [Escherichia coli IAI1]
 gi|218366209|emb|CAR03957.1| histidyl tRNA synthetase [Escherichia coli S88]
 gi|218371010|emb|CAR18838.1| histidyl tRNA synthetase [Escherichia coli IAI39]
 gi|218428198|emb|CAR09115.2| histidyl tRNA synthetase [Escherichia coli ED1a]
 gi|222034225|emb|CAP76966.1| Histidyl-tRNA synthetase [Escherichia coli LF82]
 gi|226901390|gb|EEH87649.1| histidyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|227835899|gb|EEJ46365.1| histidine--tRNA ligase [Escherichia coli 83972]
 gi|238861425|gb|ACR63423.1| histidyl tRNA synthetase [Escherichia coli BW2952]
 gi|242378112|emb|CAQ32885.1| histidyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253323636|gb|ACT28238.1| histidyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974389|gb|ACT40060.1| histidyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253978556|gb|ACT44226.1| histidyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|254593860|gb|ACT73221.1| histidyl tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|257755257|dbj|BAI26759.1| histidyl tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257760291|dbj|BAI31788.1| histidyl tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257765559|dbj|BAI37054.1| histidyl tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|260448406|gb|ACX38828.1| histidyl-tRNA synthetase [Escherichia coli DH1]
 gi|284922464|emb|CBG35551.1| histidyl-tRNA synthetase [Escherichia coli 042]
 gi|290763608|gb|ADD57569.1| Histidyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|291433427|gb|EFF06406.1| histidyl-tRNA synthetase [Escherichia coli B185]
 gi|291471396|gb|EFF13880.1| histidyl-tRNA synthetase [Escherichia coli B354]
 gi|294493901|gb|ADE92657.1| histidyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|299881273|gb|EFI89484.1| histidyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300300933|gb|EFJ57318.1| histidyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300304049|gb|EFJ58569.1| histidyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300396415|gb|EFJ79953.1| histidyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300403744|gb|EFJ87282.1| histidyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300408871|gb|EFJ92409.1| histidyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300416893|gb|EFK00204.1| histidyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300454931|gb|EFK18424.1| histidyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300461960|gb|EFK25453.1| histidyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300526569|gb|EFK47638.1| histidyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300529704|gb|EFK50766.1| histidyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300841806|gb|EFK69566.1| histidyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300843624|gb|EFK71384.1| histidyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|305851810|gb|EFM52262.1| histidyl-tRNA synthetase [Escherichia coli NC101]
 gi|306907414|gb|EFN37918.1| histidyl-tRNA synthetase [Escherichia coli W]
 gi|307554537|gb|ADN47312.1| histidyl-tRNA synthetase [Escherichia coli ABU 83972]
 gi|307625930|gb|ADN70234.1| histidyl-tRNA synthetase [Escherichia coli UM146]
 gi|308121895|gb|EFO59157.1| histidyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|309702846|emb|CBJ02177.1| histidyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|312947091|gb|ADR27918.1| histidyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061833|gb|ADT76160.1| histidyl tRNA synthetase [Escherichia coli W]
 gi|315137138|dbj|BAJ44297.1| histidyl-tRNA synthetase [Escherichia coli DH1]
 gi|315256534|gb|EFU36502.1| histidyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|315288066|gb|EFU47466.1| histidyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315292446|gb|EFU51798.1| histidyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315300479|gb|EFU59708.1| histidyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|315615773|gb|EFU96405.1| histidyl-tRNA synthetase [Escherichia coli 3431]
 gi|320180504|gb|EFW55435.1| Histidyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320188847|gb|EFW63506.1| Histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320196351|gb|EFW70975.1| Histidyl-tRNA synthetase [Escherichia coli WV_060327]
 gi|320640858|gb|EFX10346.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320646301|gb|EFX15228.1| histidyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320651806|gb|EFX20186.1| histidyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320657192|gb|EFX25001.1| histidyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320667602|gb|EFX34517.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
 gi|323159384|gb|EFZ45369.1| histidyl-tRNA synthetase [Escherichia coli E128010]
 gi|323177362|gb|EFZ62950.1| histidyl-tRNA synthetase [Escherichia coli 1180]
 gi|323377586|gb|ADX49854.1| histidyl-tRNA synthetase [Escherichia coli KO11]
 gi|323936407|gb|EGB32697.1| histidyl-tRNA synthetase [Escherichia coli E1520]
 gi|323941224|gb|EGB37409.1| histidyl-tRNA synthetase [Escherichia coli E482]
 gi|323949174|gb|EGB45065.1| histidyl-tRNA synthetase [Escherichia coli H252]
 gi|323955755|gb|EGB51513.1| histidyl-tRNA synthetase [Escherichia coli H263]
 gi|323961330|gb|EGB56942.1| histidyl-tRNA synthetase [Escherichia coli H489]
 gi|323967962|gb|EGB63374.1| histidyl-tRNA synthetase [Escherichia coli M863]
 gi|323971073|gb|EGB66321.1| histidyl-tRNA synthetase [Escherichia coli TA007]
 gi|323977303|gb|EGB72389.1| histidyl-tRNA synthetase [Escherichia coli TW10509]
 gi|324008522|gb|EGB77741.1| histidyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|324011229|gb|EGB80448.1| histidyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|324118142|gb|EGC12039.1| histidyl-tRNA synthetase [Escherichia coli E1167]
 gi|326340312|gb|EGD64116.1| Histidyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
 gi|326344996|gb|EGD68740.1| Histidyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|327252221|gb|EGE63893.1| histidyl-tRNA synthetase [Escherichia coli STEC_7v]
 gi|331054324|gb|EGI26351.1| histidine--tRNA ligase [Escherichia coli TA206]
 gi|331059876|gb|EGI31853.1| histidine--tRNA ligase [Escherichia coli TA143]
 gi|331074965|gb|EGI46285.1| histidine--tRNA ligase [Escherichia coli H591]
 gi|331079114|gb|EGI50316.1| histidine--tRNA ligase [Escherichia coli H299]
 gi|332087961|gb|EGI93086.1| histidyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332344386|gb|AEE57720.1| histidyl-tRNA synthetase HisS [Escherichia coli UMNK88]
          Length = 424

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|150020638|ref|YP_001305992.1| histidyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|166228626|sp|A6LL06|SYH_THEM4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|149793159|gb|ABR30607.1| histidyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 419

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 132/418 (31%), Gaps = 41/418 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    RE     G  E+  P  +  +L+V S     D   KEM    D+ D+++   
Sbjct: 19  WYFIENTAREITRLYGYSEIRTPIFEQTELFVRSVGEETDIVQKEMYTFKDKGDRSITLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +      LP   + I   FR E RP+ G  R R+F          + 
Sbjct: 79  PEGTAPTIRAFIENSMVATGLPKRLFYIGPMFRYE-RPQAG--RQRQFHQFGIELIGSSS 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQV 221
             +      +     R    LGL    ++  S               E+   +D  +   
Sbjct: 136 SLADAEAIVVAD---RFLKSLGLVDYTIKINSIGCEKCRAEYKKKLKEYY--SDKLDKVC 190

Query: 222 FCSKDFMDFPI-----PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              K   +  I        + ++       +               +     D   E   
Sbjct: 191 DDCKRRYNTNILRLLDCKVDVEYVKDAPKITDYLCDNCKKHYEETKNILDKLDINYEEDP 250

Query: 277 VSARGIEVG-------HIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVA 326
           +  RG++         H    G + ++     +       G      +G + +G  R++ 
Sbjct: 251 LLVRGLDYYNGIVFEIHHGKLGAQSAIGGGGRYDNLIKELGGQQTPSLG-FAMGIERLII 309

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           AV       +GI   + +   ++ + ++    +  R    KI   L   G  V ++ M  
Sbjct: 310 AV-----KKEGIPV-EEIKNNEVFVAHLG---ESARIEAIKISEELRDNGISVVFNTMER 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +Q   A  L   L +IVG   +  + V +++  TG + ++  + ++         
Sbjct: 361 GLSAQLKHASRLNCRLCLIVGENELERNVVILRNMKTGEQIEIERDYIVGTTREWIDE 418


>gi|303229444|ref|ZP_07316234.1| histidine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|303230874|ref|ZP_07317621.1| histidine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514634|gb|EFL56629.1| histidine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302515980|gb|EFL57932.1| histidine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 423

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 136/443 (30%), Gaps = 51/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G   +LP        +   +RE     G  E+  P  +   L++       D 
Sbjct: 1   MAIKRPRGTQDFLPEQIVNWHYIEQHMREICKAYGFSEIRTPAFEDTKLFLRGIGETTDV 60

Query: 89  YGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM   +  D  +++    P +       +  +    +     ++ +   FR + +P+
Sbjct: 61  VSKEMYTFSTGDDKEQSYTLRPENTASAVRAYLENKVYGKENLTKWFYMGSMFRHD-KPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
            G  R REF    A                M V   ++    GLK + +   S       
Sbjct: 120 AG--RYREFHQFGAEVLGSPSPVVDSEVICMIV---QLLKDFGLKDLNVEVNSVGCPNCR 174

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN-----SIVEQWTAP 255
           P       EF    +  + Q+        +  P    D  +            + +    
Sbjct: 175 PTYRQKLIEFF---EPKKDQLCEDCQERLYKNPLRLLDCKNETCKALSVGAPEIHEHLCE 231

Query: 256 YAATSDVHNEKLFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSAT----------- 301
              T     + L D+            RG++      F  +Y+ P+ A            
Sbjct: 232 ECNTHFEELKTLLDAANIQYNLNPRLVRGLDYYTKTAFEVQYT-PLGAQSAVAGGGRYDG 290

Query: 302 -FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG         + +G  R++ A+       K  + P+      + ++ +    + 
Sbjct: 291 LVEELDGPHTPAI--GFAMGMERLLLAL------EKQNLLPEPTIEPAVFVVALG---EA 339

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +    KI   L         D  G+ + +Q   A+ +     +IVG   ++  +  I+ 
Sbjct: 340 AKLEAFKICQTLRSAYITAEMDGQGKSMKAQLKYANKIHAKYVIIVGDDELAKQEAIIRF 399

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             T  +E + L  V    S    
Sbjct: 400 METSEQETVPLASVSERISSLVK 422


>gi|148998081|ref|ZP_01825594.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|168575992|ref|ZP_02721897.1| histidyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|307068738|ref|YP_003877704.1| histidyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|147756091|gb|EDK63134.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|183578088|gb|EDT98616.1| histidyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|306410275|gb|ADM85702.1| Histidyl-tRNA synthetase [Streptococcus pneumoniae AP200]
          Length = 429

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVTLPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LG---EGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFVAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|218506204|ref|ZP_03504082.1| threonyl-tRNA synthetase [Rhizobium etli Brasil 5]
          Length = 213

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 65/214 (30%), Gaps = 32/214 (14%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            DA+ F  T E       K+    L ++   G K I ++  + P     S      A+  
Sbjct: 1   DDAHIF-CTDEQMAAECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAV 59

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T V  +                +  S   I         A      E         K  
Sbjct: 60  MTDVLKT---------------IEAQSEGRIKTGILPGEGAFYGPKFEYTL------KDA 98

Query: 278 SARGIEVGHIFYFGTKYSLP--MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHD 334
             R  + G        ++LP    A +  ++  K   V +     G+M     ++  +  
Sbjct: 99  IGREWQCGTT---QVDFNLPERFGAFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFA 155

Query: 335 GKGIIWPDSVAPFKISLINIKAH-DQVCRDACEK 367
           G   +W   V+P ++ +  I +  D    +  E+
Sbjct: 156 GHMPLW---VSPLQVVVATITSEADAYGLEVAER 186


>gi|160872281|ref|ZP_02062413.1| glycyl-tRNA synthetase [Rickettsiella grylli]
 gi|159121080|gb|EDP46418.1| glycyl-tRNA synthetase [Rickettsiella grylli]
          Length = 459

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 81/504 (16%), Positives = 148/504 (29%), Gaps = 132/504 (26%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMS 70
           EI S  L  R G I   +      +G+Y + PLG +  +N+     +     R     + 
Sbjct: 8   EIVS--LCKRRGFIFPSAEIYGGLQGVYDYGPLGVELKNNLKMAWWKSNVYERDDIYGLD 65

Query: 71  VPTLQSADLWVESGRYDSYGK------------------------------------EML 94
              L    ++  SG   ++                                       M+
Sbjct: 66  SAVLTHQKIFYYSGHERTFADLLVDCKQCKKRWRFDHLKKGQCETCGSTQLTEPRTFNMM 125

Query: 95  ------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
                  L D N  A +   T + + T+            PF   QI   FR+E+ PR  
Sbjct: 126 FKTTIGPLEDSNAFAYLRPETAQGIFTNFKNIMDSMSPRFPFGIAQIGKAFRNEITPRNF 185

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +                                                 
Sbjct: 186 IFRVREFEQLEI------------------------------------------------ 197

Query: 209 EFIVLADTGETQVFCSKDF----MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           EF V    GE + +           +     N     +++ N+      A          
Sbjct: 198 EFFVK--PGEDEKWHHYWVESRLTWWKNQGLNPQRLKLLNQNASELAHYAKATTDILYKF 255

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT--------FKGADGKDHYVQMGS 316
              F+ L      +   +        G      +S           +   G      +  
Sbjct: 256 PHGFEELEGISNRTDYDLGSHTQGQNGLNIHANISVNKESIAKLSVQDPPGSHFIPYVIE 315

Query: 317 YGIGAMRVVAAVIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEK 367
              G  R V A++  +++ + +              +AP KI++I +K +D    +    
Sbjct: 316 PSAGLDRGVLALLTEAYEEETLKDGKKRFVLKIQPHLAPVKIAIIPLKKNDSGLVEKANV 375

Query: 368 IYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV-----GS-KFVSD-SKVEIK 419
           +   +  +G   + ++D G  IG  +   D +G PL + +     G  K V +   V ++
Sbjct: 376 LKHAIQVLGLGRIAFEDTGN-IGKSYRRHDEIGTPLCITIDFDTIGKSKNVENHDTVTVR 434

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
           +R +  +  + L E+ NY  + FS
Sbjct: 435 YRDSMEQTRIHLSELENYIKNYFS 458


>gi|42560999|ref|NP_975450.1| glycyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|59798544|sp|Q6MTE4|SYG_MYCMS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|42492496|emb|CAE77092.1| glycine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320658|gb|ADK69301.1| glycine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 456

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 122/365 (33%), Gaps = 70/365 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +      + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTNQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P   K  +                K I +   +  I  +L 
Sbjct: 208 FIFRTREFEQMELEFF-FDPSDQKDWFKYWLDQIELFLT----KKICLDKSNYKIRENLK 262

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A                 + + + +F+       +               N   
Sbjct: 263 DELSHYA-----------------LKTSDIEFNFPFGWGELWGISHRSDFDLKVHQNLSK 305

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D     +                              + +     +    +G  R++ A
Sbjct: 306 EDLTVLKE-----------------------------ENNQKVLANVIEPSVGVERLMLA 336

Query: 328 V---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +         +E ++    +  P ++AP+++++  +            +++  L K   D
Sbjct: 337 IFWQAYTEEQLEENNSRTVLKLPYNLAPYQVAITPLSKQ---LNQNAHQLFLELLK-DFD 392

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + + ++ ++ 
Sbjct: 393 AVYDETGN-IGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILISQLKDFL 451

Query: 439 SHRFS 443
           + +F+
Sbjct: 452 NSQFN 456


>gi|312865842|ref|ZP_07726064.1| histidine--tRNA ligase [Streptococcus downei F0415]
 gi|311098717|gb|EFQ56939.1| histidine--tRNA ligase [Streptococcus downei F0415]
          Length = 426

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 130/430 (30%), Gaps = 49/430 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS +++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F  +   S      M  +Y  +F  LG++ + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGSSNPASDVETIAM--AYQ-LFKELGIREVTLHLNSLGNTSSR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 LAYRQALIDYLTPMKDSLSKDSQRRLEENPLRVLDSKEKEDQVAVENAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA- 305
                            +             RG++     IF F  K          G  
Sbjct: 235 AHFEAVRQML-------ESLAIPYVIDTNMVRGLDYYNHTIFEFMAKVGDSDLTICAGGR 287

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG   Y            +    +    D +GI  P         +  +    Q     
Sbjct: 288 YDGLVDYFDGPETPGFGFGLGLERLLLILDKQGISLPVEEG-LDAYIAVLG---QAANAK 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L   G     D +G +I +QF  AD       + +G   +   ++ +K+  T 
Sbjct: 344 ALELVQALRAQGFKAERDYLGRKIKAQFKSADAFKAKTLITLGESELESGQLTVKNNQTR 403

Query: 425 IREDMSLEEV 434
              + SL+ +
Sbjct: 404 QELETSLDTI 413


>gi|260424642|ref|ZP_05732783.2| histidine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402663|gb|EEW96210.1| histidine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 423

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 139/449 (30%), Gaps = 66/449 (14%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--S 83
           MLR   I Q  +G    LP      ++V ++I+E     G  E+  P  +   L++    
Sbjct: 1   MLR---ILQALRGTQDILPDNIYKWNHVESVIKELCALYGYSEIRTPMFEDTKLFLRGIG 57

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              D   KEM    DR  +++   P +   +   +  H           + I   FR + 
Sbjct: 58  DTTDVVAKEMYTFEDRGGRSITLRPENTAAVVRSYLEHKLYGDQQVHKLFYIGSMFRYD- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R REF          +   +      +      +F  LGLK + +   S    
Sbjct: 117 RPQAG--RYREFHQFGVEVLGASSPAADAE---VINLAYTLFKTLGLKELELHINSIGDY 171

Query: 200 --GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN--------SIV 249
              PI      EF    +  E Q+           P    D  +             +  
Sbjct: 172 KCRPIYRQKLIEFF---EEKEDQLCDDCQARLHKNPLRILDCKEDSCRRASAGAPKITDY 228

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT-------- 301
                     +        +          RG++      F  +Y  P+ A         
Sbjct: 229 LCDECEKKFEAVKRYLAALEIPYLVDSRLVRGLDYYTNTAFEIQY-PPLGAQSAICGGGR 287

Query: 302 ----FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                +   G         + +G  R++ A+          + P+     K+ ++ +   
Sbjct: 288 YDGLVEDVGGPSTPGI--GFAVGLERLLLALEMQK------LIPEPANRKKVYIVTL-GE 338

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD--DMG-----EQIGSQFAVADLLGFPLQVIVGSKF 410
           D V      KI   L   G     D  D       +Q G     A+       VI+G+  
Sbjct: 339 DAVVEGI--KIQQHLRDKGVIAEIDLQDRSIKGQMKQAGK--NNAE-----YTVIIGANE 389

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +   +  +K+   G ++D+   +V ++ +
Sbjct: 390 MEKKEAAVKNMENGKQQDIPFLKVSDFIT 418


>gi|308272198|emb|CBX28804.1| Histidyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 417

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 134/436 (30%), Gaps = 44/436 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY- 89
           MI Q  +G+   LP        +           G  E+ +P ++  +L+  S   D+  
Sbjct: 1   MI-QLIRGVKDILPGEIGLWQKIEKTAISLFESFGFCEIRLPIIEHTELFARSIGQDTDI 59

Query: 90  -GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    ++ D+ +   P     +   +  H     +    FY I   FR E RP+ G
Sbjct: 60  VEKEMYTFLNKKDEMITLRPEATASIVRAYIQHRLYAIDPVQKFYTIGPMFRRE-RPQKG 118

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F   +A    +    +      M V    +  RL +  + +   S       P 
Sbjct: 119 --RYRQFYQINAEVLGVDSPLTDAQLIFMLV---ELLKRLSVPDVCVYLNSLGCPVCRPG 173

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+       T      D       +     D  +       +           
Sbjct: 174 FKKSLQKFMS-----NTTAMLCSDCERRKEKNPLRVLDCKVLACREAMKDAPSIIEHLCN 228

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSATFKGADGKDHYVQ 313
             E+ F+++  +        E+      G  Y         +  + A    A G  +   
Sbjct: 229 ECEEHFEAVKNSLNDLNIQFEIDKRLVRGLDYYTRTTFEVHTGSLGAQSAVAGGGRYDRL 288

Query: 314 MGSYGIGAMRVVAAVI-------ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + S G  +   +   I         S D  G+     +         I A  +  R    
Sbjct: 289 IESLGGPSQPAIGFAIGFDRLAEIISSDNAGVSCKPDL--------FIAALGEQARTNAL 340

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K    LS  G     D   + +  Q   AD L     +I+G   +S+    +++ +T  +
Sbjct: 341 KWSCALSLSGIKTETDFSDKGLKGQMKKADRLAAGHVLIIGDNELSEGSAILRNMMTKEQ 400

Query: 427 EDMSLEEVINYASHRF 442
             + ++ ++      F
Sbjct: 401 VSVPIDGIVEKLKSIF 416


>gi|290999699|ref|XP_002682417.1| predicted protein [Naegleria gruberi]
 gi|284096044|gb|EFC49673.1| predicted protein [Naegleria gruberi]
          Length = 664

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 10/247 (4%)

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE     ++ E  +    D M   +        ++ +L + +     P+ A S      +
Sbjct: 292 HEIHTCHESEENALSYMNDIMWNRV--YLPVLLNVCNLWNGISYHLFPWKAFSHCKQAIV 349

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD        S   + +    Y+G  +S   +  ++            + G  + R++ A
Sbjct: 350 FDVSLPFVNTS---VNIARTNYYGRIFSDVYNIVYRLKQDNFTSPIFQTCGNISSRILGA 406

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM 384
              S  D KG+    ++  ++I ++ + +      +  +    +  +L   G  V  D  
Sbjct: 407 CAASCSDDKGLRLHSTMNKYQIVIVPMLSKSCDTNILYENVRSMEKKLKSFGFRVHADMR 466

Query: 385 GEQIGS-QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV-INYASHRF 442
                  +F   +  G  L V +G + +  S + IK R +  +  +   EV     S   
Sbjct: 467 YATKNVEKFYQWESKGVSLVVSIGKQELEGSTITIKGRNSLKKSTIPANEVNFEMISSLL 526

Query: 443 SNNRPVL 449
                 L
Sbjct: 527 DKEDSHL 533


>gi|269792195|ref|YP_003317099.1| histidyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099830|gb|ACZ18817.1| histidyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 423

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 140/426 (32%), Gaps = 31/426 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           +  +G    +P        V ++ R   +  G  E+ +P  +  +L+        D   K
Sbjct: 5   RAPRGTKDVMPDESWKWAYVMSVFRGVADDFGYREVHLPIFEHTELFCRGIGDTTDVVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR  +++   P     M   +  H    +  P   + +   FR E RP+ G  R
Sbjct: 65  EMYTFTDRGGRSITLRPELTASMVRAYLEHDLRNQQQPVKLWSVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+F   D  +              +    L ++ RLGL ++ +   S       P+   
Sbjct: 122 YRQFWQVDVEALGSQDPMVDLE---VIGFSLELYRRLGLSNLEVVLNSVGCPKCRPVHRK 178

Query: 206 LSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              +F+     G  +    +   +    +  +N D   +      +              
Sbjct: 179 ALTDFLGAKLDGLCETCRGRFHRNPLRILDCKNPDCKALTEDAPAMTDHLCDECRDHFHA 238

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSAT--FKGADGKDHYVQMGSYG 318
             K  D+     ++  R +  G  +Y  T Y   S  + A     G    DH  +     
Sbjct: 239 LLKGLDAAGAVVKLDKRLV-RGLDYYTKTAYEILSGDLGAQNAVCGGGRYDHLAEAIGGP 297

Query: 319 IGAMRVVAAVIE---SSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                  A+ +E    + + +G  +    S+  F ++       +   R A   +   L 
Sbjct: 298 FVPGVGFASGVERIVITMESQGCSFGQEPSIDAFVVTASP----EMNVRLAASALLKGLR 353

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G     D  G+   +Q  +A     P   I+G + +  S V +K   +G +  + L +
Sbjct: 354 ALGVRSDMDYSGKSFKAQMKLASQRNAPWVCIIGDEELLRSVVTLKDMGSGEQTQVPLGD 413

Query: 434 VINYAS 439
               A 
Sbjct: 414 SAEIAK 419


>gi|91784206|ref|YP_559412.1| histidyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123168325|sp|Q13X29|SYH_BURXL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|91688160|gb|ABE31360.1| histidyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 446

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 139/448 (31%), Gaps = 71/448 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIIEHTQLFKRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +   S      L+HE    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLMGIKLELNSL----GLAHERA-- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  K        ++   + + + +           A  +    + L +    
Sbjct: 182 AHRVELIAYLEKHMDVLDEEAKRRLYTNPLRVLDTKNPAMQEVAQNAPKLIDFLGEESRA 241

Query: 274 NKRVSARGIEVGHI-FYFGTK-------YSLPMSATFKGADGKD---------------- 309
           +     R ++  +I F    +       Y+L +        G                  
Sbjct: 242 HFEGLQRILKANNIPFTINQRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESS--HDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                    + +G  R++  + E     + +G           + +++     +  R+  
Sbjct: 302 GGKPTAACGWAMGIERILELLKEEQLVPEDEGC---------DVYVVH---QGEAAREQA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             I  RL   G DV      D  G+    +     AD  G    V++G   +++  V +K
Sbjct: 350 FIIAERLRDTGLDVILHCSAD--GQTASFKSQMKRADASGAAFAVVLGEDEIANGTVGVK 407

Query: 420 -HRLT------GIREDMSLEEVINYASH 440
             R T        + ++  E++  +  +
Sbjct: 408 PLRDTNADGGKNEQHNVPAEDLTEFLIN 435


>gi|213691693|ref|YP_002322279.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523154|gb|ACJ51901.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457784|dbj|BAJ68405.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 490

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 162/493 (32%), Gaps = 77/493 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M +SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAQSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +   ++WV SG    +     E L    RN    +     E+   
Sbjct: 54  MVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECLNCHKRNRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K              + +  E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 KMPENGMKD-----IVCPNCGTRGQWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGI 168

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
           +             +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 169 F-------------VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F  P  + ++                    +  H E   +   +    S R +++ + 
Sbjct: 216 EFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKE---KLSHYSKRTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T Y L   +   G D        G+ +   +     G  R + 
Sbjct: 273 FGFQGSDWGELEGIANRTDYDLSAHSKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +  ++D                +     +AP K +++ +    ++     + +   L 
Sbjct: 333 CFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQNLADDLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++
Sbjct: 392 FNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQERVALDK 450

Query: 434 VINYASHRFSNNR 446
           V +Y + R    R
Sbjct: 451 VADYVAARIGEKR 463


>gi|192359600|ref|YP_001983012.1| seryl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|238692464|sp|B3PL38|SYS_CELJU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|190685765|gb|ACE83443.1| seryl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 428

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 12/207 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +   N+ G  E+++P + + D    +G+   + +++ +L D  D+   
Sbjct: 170 ARLHRALAQFMLDTHINQHGYEEVNIPFIVNRDSLFGTGQLPKFEEDLFKLTD--DREFY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I+R  I     LP  F      FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPLTNIYRDAILEDNQLPIKFVAHSPCFRSEAGSYGRDTRGMIRQHQFEKVE-L 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            + + PE S  +   +     +I H L L    +    G IG   +     E  V +   
Sbjct: 287 VWLVQPEKSDEALEALVAHAEKILHDLELPHRTVVLCGGDIGFSAAKTYDIEVWVPSQNK 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF        F +  +
Sbjct: 347 YREISSCSNVRDFQARRMLARFRNKET 373


>gi|292489046|ref|YP_003531933.1| histidyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|291554480|emb|CBA22007.1| Histidyl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 450

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 145/423 (34%), Gaps = 43/423 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V  ++++  +  G  E+ VP ++   L++ + G   D   K
Sbjct: 31  QAIRGMNDYLPAETAVWQRVEQVLKQVLSSYGFSEIRVPIVEQTPLFLRAIGEVTDVVEK 90

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 91  EMYTFDDRNGESLSLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 146

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SR+F    A  F L           M     R +  LG+    +  E   IG   +    
Sbjct: 147 SRQFHQIGAEVFGLQGPDIDAELIMM---TARWWKALGIADHVV-LELNSIGSLQARANY 202

Query: 212 VLADT----------GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A            GE             + S+N D   +++    +  +    +    
Sbjct: 203 RDALVAFLEQHVEMLGEDCKRRMYSNPLRVLDSKNPDVQALLNDAPTLGDYLDDESREHF 262

Query: 262 VHNEKLFDSLP---ENKRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKD 309
               +  D+        +   RG++     +F       G + ++     + G       
Sbjct: 263 AGLCRHLDAAGIAYRVNQRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGG 322

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H      + +G  R+V  V   +             P ++  + + A  Q  + A   + 
Sbjct: 323 HATPAVGFAMGLERLVLLVQAVN---------PEFEPTRVVDVYVIAAGQGVQSAALLLA 373

Query: 370 ARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +L     ++    +  G     QFA AD  G  + +++G   V++ ++ IK   TG ++
Sbjct: 374 EQLRDALPELKLMSNLGGGSFKKQFARADKWGARIALVIGEDEVANGQLVIKDLRTGEQQ 433

Query: 428 DMS 430
            ++
Sbjct: 434 TLA 436


>gi|325677071|ref|ZP_08156741.1| glycyl-tRNA synthetase beta subunit [Rhodococcus equi ATCC 33707]
 gi|325552142|gb|EGD21834.1| glycyl-tRNA synthetase beta subunit [Rhodococcus equi ATCC 33707]
          Length = 468

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 69/452 (15%), Positives = 145/452 (32%), Gaps = 74/452 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +    +W  SG  + +     E L
Sbjct: 39  WDYGPLGVELKENIKKQWWRNMVTSREDVVGLDSSVILPRQVWEASGHVEVFTDPLVECL 98

Query: 95  RLADRNDKAMIYGPTHEEV---------MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
               R+ +  +     E+          MT+I      +                 E + 
Sbjct: 99  NCHKRHRQDHLQEAYAEKHKLDDPDAVAMTEIVCPDCGTKGQ------------WTEPKA 146

Query: 146 RFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
             G++++    +        L PE ++     +FV++  +               G IG 
Sbjct: 147 FSGLLKTYLGPVDSETGLHYLRPETAQ----GIFVNFANVLTT---SRKKPPFGIGQIGK 199

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +E         T+ F   +   F  P E+ ++        +           +    
Sbjct: 200 SFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDYRMDWYTGLGINKDNLRLY 259

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD----- 306
           E    +  +    S R +++ + F F              T Y L   A   G D     
Sbjct: 260 EH---AQEKLSHYSKRTVDIEYRFQFQGSEWGELEGVANRTDYDLATHAKASGTDLSYFD 316

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKIS 350
              G+ +   +     G  R + A +  ++                 +     +AP K +
Sbjct: 317 QTSGERYTPYVIEPAAGLTRSLMAFLVDAYTEDEAPNAKGGVDKRTVLKLDRRLAPVKAA 376

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + + +       + +   L +   ++ +DD G  IG ++   D +G P  + V    
Sbjct: 377 VLPL-SRNADLSPKAKDLATTLRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCITVDFDT 433

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 434 LEDQAVTIRERDTMAQERVSLDQVEGYLAQRL 465


>gi|46396578|sp|P60913|SYH_BDEBA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 416

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 142/428 (33%), Gaps = 45/428 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGK 91
           Q  +G    LP        V     E+    G  E+  P  + +D++  + G   D   K
Sbjct: 6   QRVRGTRDLLPEDSILFRFVEESAYEKALLYGYGEIETPIFEFSDVFHRTLGETSDVVNK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  +++   P     +   F S     +NLP  FY     FR E RP+ G  R
Sbjct: 66  ETYDFTDRGGESLTLRPEGTAGVARAFISEGMM-QNLPLKFYYSGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGG 204
            R+F    A         +             +  ++G+             AES     
Sbjct: 122 YRQFYQLGAECLGYESPLADVET---ISLAWDLLKKIGISDDCTLEINTLGDAESRAAYR 178

Query: 205 D------------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           D            LS +  +  +    ++  SKD  D  + +     +  ++  S     
Sbjct: 179 DTLVNYFTAHKDQLSEDSKMRLEKNPLRILDSKDEGDKKLNANAPKLEQSLNQTSQDFFK 238

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDH 310
                        K+ D          RG++     +F F T           G  G+  
Sbjct: 239 KVIAGIEKLGIPYKIND-------HLVRGLDYYCHTVFEFTTTKLGAQGTVLAG--GRYD 289

Query: 311 YVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +     G        AA I+   D    + P  +A  K  +I +   D+   D   K+ 
Sbjct: 290 GLIETMGGPKTPGVGWAAGIDRLAD----LTPKELATKKEVIIAVVGADEQGEDESVKVA 345

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             +   G        G ++G +   A+ LG    +I+G   V++  V +K+  TG ++++
Sbjct: 346 HEMRVRGFKTENFLSG-KMGKKMQKANKLGAHYALILGGNEVTNKTVTVKNFTTGEQKEI 404

Query: 430 SLEEVINY 437
           +  E+  Y
Sbjct: 405 TRAELQTY 412


>gi|328479646|gb|EGF48826.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 101

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%)

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   +I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++  
Sbjct: 1   LDYVNRIKRQMQAAGLRVKVDDRNEKMGYKIREAQTKKVPYTVVVGDKELNDAAVSVRRY 60

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                E+ +    I+       N 
Sbjct: 61  GDEHTEEEAGNMFIDAMVAEVKNY 84


>gi|197122762|ref|YP_002134713.1| histidyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|226737063|sp|B4UEL3|SYH_ANASK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|196172611|gb|ACG73584.1| histidyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 414

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 143/426 (33%), Gaps = 42/426 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP        + ++ RE     G  E+  P ++ A L+    G   D   KEM 
Sbjct: 7   KGMNDVLPADVARWHEMESVAREVFALYGYREVRTPAVEHAALFARGVGEATDIVNKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ ++ +   P         F  H   +   P  ++ +   FR E RP+ G  R R+
Sbjct: 67  VFEDKGEELLALRPEGTAGTVRAFIEHGA-FVEGPQKWFYMGPMFRRE-RPQKG--RYRQ 122

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F      +F +           +   Y   F RLG   +    +   +G          A
Sbjct: 123 FHQIGCEAFGVAEPYLDAEQIALLADY---FARLG---VTAELKLNSVGDAQ----CRPA 172

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              + + +   +        ++    + + +     +   P    +    E+L +    +
Sbjct: 173 YLADLKAYLVANQGALCADCKDRIERNPLRVLDCKVESCQPVLEQAPQLLERLCEPCRTH 232

Query: 275 KRVSARGIEV-------------GHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYG 318
                 G++              G  +Y  T Y   S  + +    A G  +   + + G
Sbjct: 233 FDQVKAGLDALGVAYRVEPRLVRGLDYYVRTAYEFTSDALGSQSAVAGGGRYDRLVETLG 292

Query: 319 IGAMRVVAAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                 +   +         +  G   P+     + ++  + A      +A  ++ A L 
Sbjct: 293 GPPTPGIGFALGEERLSMILEKVGRAMPER----RPAVFFVSADATGALEA-LRLAAGLR 347

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G     D  G ++ +QF  A+ +G    V++G   V+  + ++K   T     ++L E
Sbjct: 348 RAGIACELDPRGGKLKAQFKQAERVGARWAVVLGGNEVATGQAKLKDLQTREETPVALSE 407

Query: 434 VINYAS 439
           +    S
Sbjct: 408 LAARVS 413


>gi|301795047|emb|CBW37512.1| histidyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 429

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQTLRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|166077810|gb|ABY80999.1| glutamyl-prolyl tRNA synthetase [Limnomysis benedeni]
 gi|166077812|gb|ABY81000.1| glutamyl-prolyl tRNA synthetase [Limnomysis benedeni]
 gi|166077814|gb|ABY81001.1| glutamyl-prolyl tRNA synthetase [Limnomysis benedeni]
          Length = 144

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+     +  +    S+GI   R +  ++    D K
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIIFEDPKTNEKKFAYQNSWGIT-TRTIGVMVMVHGDDK 80

Query: 337 GIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           G++ P +VA     ++ +        A      ++ +K+   LS  G  V  D       
Sbjct: 81  GLVLPPNVAAIHCIIMPVGITAKTTDAERDSLFESAKKLEGELSAGGIRVESDFRDNVTP 140

Query: 389 GSQF 392
             +F
Sbjct: 141 AWKF 144


>gi|257055413|ref|YP_003133245.1| glycyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256585285|gb|ACU96418.1| glycyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
          Length = 463

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 152/446 (34%), Gaps = 61/446 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  DN+     +   QNR   + +    +    +WV SG   ++     E L
Sbjct: 33  WDYGPLGVELKDNIKRQWWKAVVQNREDVVGIDSSVILPRQVWVASGHVGAFHDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E    ++   +  S   +P      + K+     PR   M  + 
Sbjct: 93  SCHRRYRSDQLAEEYAERTGAEVVDENDLS--QVPCPNCGTRGKY---TEPREFNMMLKT 147

Query: 155 FL---MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           FL     +     L PE ++     +FV++L +               G IG    +E  
Sbjct: 148 FLGPVESEEGLHYLRPETAQ----GIFVNFLNVQTT---TRKKPPFGIGQIGKSFRNEIT 200

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T+ F   +   F  P E+  +                    +  H E   +  
Sbjct: 201 PGNFIFRTREFEQMEMEFFVEPGEDEKWHQYWIDERTEWYVDLGIRRENLRHYEHPKE-- 258

Query: 272 PENKRVSARGIEVGHIFYFG--------------TKYSLPMSATFKGAD--------GKD 309
            +    S R +++ + F F               T + L   +   G D        G+ 
Sbjct: 259 -KLSHYSKRTVDIEYRFRFSSGQEWGELEGIANRTDFDLTTHSNHSGVDLSYFDQASGQR 317

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
           +   +     G  R + A +  ++                 +     +AP+K++++ + +
Sbjct: 318 YRPFVIEPAAGVGRAMMAFLLDAYTEDEVPNAKGGMDKRVVLKLDPRLAPYKVAVLPL-S 376

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +         I A+L K   +  +DD  + IG ++   + +G P  V V    + D  V
Sbjct: 377 RNADLTPKARDIAAQLRKHW-NTDFDD-AQSIGKRYRRQEEIGTPYCVTVDFDTLEDHAV 434

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++ R T  +E +S++++ +Y + R 
Sbjct: 435 TVRDRDTMAQERVSIDQLESYLAARL 460


>gi|116333382|ref|YP_794909.1| histidyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269931|sp|Q03SE4|SYH_LACBA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116098729|gb|ABJ63878.1| histidyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 431

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 151/443 (34%), Gaps = 44/443 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP   +    V A  R+        E+  P  ++ +++   SG   D 
Sbjct: 1   MRYQRPKGTADILPGDSQTWQFVEATARQLFANYRFEEIRTPMFENFEVFSRTSGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F            P+  Y +   FR E RP+
Sbjct: 61  VTKEMYDFKDKGDRHLSLRPEGTAGVVRAFVENKLYGPETQKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESG 200
            G  R R+F      +F             +    + +  +LGL  + +        E+ 
Sbjct: 120 SG--RQRQFHQIGVEAFGSDAPELDVE---VIALGMNLLGKLGLTHLRLAVNTLGDQETR 174

Query: 201 PIGGDLSHEFIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   +F+     +  E             + S++    ++++    +  +  P A 
Sbjct: 175 TAYRQALIDFLEPHFDELSEDSKVRLHKNPLRVLDSKDKHDQELVADAPSILDFLTPTAT 234

Query: 259 TSDVHNEKLFDSLPENKR---VSARGIEVG--HIFY-------FGTKYSLPM-SATFKG- 304
                 +   D+L  +        RG++     IF         G  Y+  +    + G 
Sbjct: 235 AHFDRVKASLDALGIDYDVDATMVRGLDYYNHTIFEIMADSPALGEGYTTVLAGGRYNGL 294

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G +G+G  R+V  ++      + +  PD+  P  + ++ I     +  
Sbjct: 295 VEELGGPEMPGVG-FGLGVERLV--LLMQ---AEQVAIPDN-HPLDVYVVGIGDQTSL-- 345

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            A  KI   + + G     D +  +  +QF  A+ L     + +G + ++D    +K   
Sbjct: 346 -ATLKIVQAIRQSGLTADRDYLDRKPKAQFKTANRLNAAYTLTIGEQELADHTANLKSMA 404

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           TG    + L ++     +  +  
Sbjct: 405 TGEEISVPLADIYQDFQNVVATK 427


>gi|291563934|emb|CBL42750.1| glycyl-tRNA synthetase, dimeric type [butyrate-producing bacterium
           SS3/4]
          Length = 462

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+RE                              F ++ L+           G DL 
Sbjct: 214 FTFRTRE------------------------------FEQMELEFFC------KPGTDLD 237

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                       + +C K   D  I  +     D          ++        +     
Sbjct: 238 W-------FAYWKQYCIKWLQDLGIKPDEMRARDHSPEEL--CFYSKATTDLEFLFPFGW 288

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +      R      +   +   G   S      F     + +   +    +GA RV  A
Sbjct: 289 GELWGIADRTDYDLTQHQTVS--GQDMS-----YFDDEVNEKYIPYVIEPSLGADRVTLA 341

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + S++D + +          +  ++AP K+ ++ +        +  EK+YA LSK   +
Sbjct: 342 FLCSAYDEEELEGGDVRTVMHFHPAIAPVKVGILPLSKK---LNEGAEKVYAELSKY-YN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V       +D  V ++ R T  +  + + E+ +Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSETDGAVTVRDRDTMEQVRIPIAELKSYF 456

Query: 439 SHRFS 443
             + S
Sbjct: 457 EEKLS 461


>gi|262305797|gb|ACY45491.1| glu- + pro-tRNA synthetase [Streptocephalus seali]
          Length = 134

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+       G  +S      F+  + K+  +V   S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHLLGQNFSKMFDIGFENPETKERSHVWQNSWGLT-TRTIGVLVMVHADNK 73

Query: 337 GIIWPDSVAPFKISLINIK----AHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++         D+      D C+++   L   G  V  D       
Sbjct: 74  GLVLPPRVACTQVVIVPCGITAETKDEDRKTHYDLCKELEKELKAGGIRVEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|261367209|ref|ZP_05980092.1| glycine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282570808|gb|EFB76343.1| glycine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 473

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 122/367 (33%), Gaps = 64/367 (17%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +       P T + +  +       + R LPF   Q+   FR+E+ P  
Sbjct: 154 MFKTAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F       +      + +Y + F +     LG+K   +R      
Sbjct: 214 FTFRTREFEQMECEFFCKPNTDLE------WFAYWKDFCKNWLLSLGIKEENLRLRD--- 264

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                HE   LA       F S+   D       TD+ ++  +        + +   S  
Sbjct: 265 -----HEAAELA-------FYSRATTDIEYAFPFTDWGELWGIADRTNYDLSRHQEASGK 312

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             E       E+         +G       + +L         +                
Sbjct: 313 SLEYFDPETNEHYIPYVIEPSLGC-----DRVALAFLCEAYDEE--------HLVDAKGK 359

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             V  V+              +APFK +++ +        D   +I   L+K    V +D
Sbjct: 360 EDVRTVLHLH---------PFLAPFKCAVLPLSKK---LGDKAMEIRNELAK-DFMVDYD 406

Query: 383 DMGEQIGSQFAVADLLGFPLQVIV-----GSKFVS-DSKVEIKHRLTGIREDMSLEEVIN 436
           D G  IG ++   D +G PL + V     G   V  D+ V ++ R T  +  + + E+ +
Sbjct: 407 DAG-SIGKRYRRQDEIGTPLCITVDFQTVGDDKVEADNCVTVRDRDTMEQVRLPISELKD 465

Query: 437 YASHRFS 443
           Y + + +
Sbjct: 466 YIAKKVA 472


>gi|326789959|ref|YP_004307780.1| seryl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326540723|gb|ADZ82582.1| seryl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 427

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 17/231 (7%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   ++ G  E+  P + +      +G+   + ++  ++ 
Sbjct: 162 FVFYKGLGARLERAIMNFMLDMHVDKHGYTEVFPPLMVNRASMTGTGQLPKFEEDAFKVV 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +       PT E  +T+++R  I   ++L          FR E     R   G++R  
Sbjct: 222 DTD---YFLIPTAEVPVTNMYRDQILDGKDLVIKHCAYTPCFRAEAGSAGRDTRGIIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F   PE S     K+      I   LGL    +R  +G +G   +  + + 
Sbjct: 279 QFNKVEMVKF-TKPEDSYDELEKLTNDAEDILKTLGLPYRVVRLCTGDLGFSSAMTYDIE 337

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                        +  +   S  +DF+D  +  + ++           VH 
Sbjct: 338 --------VWMPSYGRYVEISSCSDFEDFQARRANIKFKDNKEDKARFVHT 380


>gi|322831767|ref|YP_004211794.1| histidyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321166968|gb|ADW72667.1| histidyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 424

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 145/437 (33%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPEDTALWQRIEGSLKQVLGSYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFNQLGVEVFGLQGPDVDAE---LILLTARWWRALGISE-HVALELNSIGSLEARADY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     +    K   D      +     + S N  ++          D  +E+  +  
Sbjct: 178 RDALVAFLEQHKDKLDEDCKRRMYSNPLRVLDSKNPDIQTLLNDAPELGDYLDEESREHF 237

Query: 272 -------------PENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG---ADGK 308
                            +   RG++     +F       G++ ++     + G     G 
Sbjct: 238 AGLCELLEQSGIPYTVNQRLVRGLDYYNRTVFEWVTSSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDAC 365
                +G + +G  R+V  V   + D K        AP  +    I +      V     
Sbjct: 298 RATPGVG-FAMGLERLVLLVQAVNPDFK--------APATVDTYVISSGAGTQSVAMQLA 348

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +   L ++     +     +   QFA AD  G  + +++G   V++ +V +K   +G 
Sbjct: 349 ETLRDALPELKVMTNYGGGNFK--KQFARADKWGARVALVLGETEVANQQVVVKDLQSGT 406

Query: 426 REDMSLEEVINYASHRF 442
           +E ++  E++   +   
Sbjct: 407 QETLAQSEIVARLASML 423


>gi|259502043|ref|ZP_05744945.1| serine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169956|gb|EEW54451.1| serine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 444

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +AD    +G++  + + + ++  
Sbjct: 174 FVYYLGLGAQLERAVYNFMLDEHMKDGYTEVLPPYIVNADSMYGTGQFPKFKEGVYQV-- 231

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP     +   FR E     R   G++R  +
Sbjct: 232 -NGEDMTLIPTAEVPLTNYYRGEVIPAEELPVYVTALTPCFRSEAGAAGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S     KM  +   I  +L +    +   +  +    S     E 
Sbjct: 291 FNKVEMVKY-TKPEDSWDELEKMTANAENILKKLEIPYHVITLTTSDMSFTASETHDLEL 349

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     +V    + +DF     +T + D   
Sbjct: 350 WMPAQEKYREVSSCSNCLDFQARRMHTQYRDENG 383


>gi|227890854|ref|ZP_04008659.1| histidyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867263|gb|EEJ74684.1| histidyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 431

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 148/443 (33%), Gaps = 62/443 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP        V    RE   +    EM  P  +S +++   SG   D 
Sbjct: 1   MKYQRPKGTADILPSESAKWQYVEEKARELFKKYRYEEMRTPIFESFEVFSRTSGETSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    + RS +++         PF  Y +   FR E 
Sbjct: 61  VTKEMYDFYDKGDRHITLRP---EGTAGVVRSFVENKLYGPEVQKPFKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R REF      +F +           M V  L+     GL S+ +   +    
Sbjct: 117 RPQSG--RLREFHQIGVEAFGVDNPTLDVEVMAMAVDLLK---SFGLNSLRVAVNTLGDL 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +      D ++ 
Sbjct: 172 ETRNNYRQALIDYLEPFEAELSDDSKERLHKNPLRVLDSKDEKDKEIVANAPSILDYLTE 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT---- 301
           ++  + +    +  +D+  E + DS                IF   +  S   +      
Sbjct: 232 DA-QKHFETVKSLLNDLGIEYVIDSNMVRGLDYYNH----TIFEIMSD-SKAFNGKWTTV 285

Query: 302 -----FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                + G     G      +G +G+G  R++  +     D +    P    P  + ++ 
Sbjct: 286 CAGGHYSGLVEQLGGPQTPGVG-FGLGVERLLLIL-----DAEEDALPIEN-PLDVYVVG 338

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I     V      K+   L   G     D +  +   QF  A+ L     + +G   + +
Sbjct: 339 IG---DVTNAVTLKLVQNLRHQGFTADRDYLNRKPKGQFKSANRLNARFTLTIGETELQE 395

Query: 414 SKVEIKHRLTGIREDMSLEEVIN 436
            +  +K    G    + LE+V N
Sbjct: 396 QEANLKFMENGNEISVKLEDVEN 418


>gi|322378041|ref|ZP_08052528.1| histidine--tRNA ligase [Streptococcus sp. M334]
 gi|321281023|gb|EFX58036.1| histidine--tRNA ligase [Streptococcus sp. M334]
          Length = 426

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   +   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENS-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LG---EGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|171742466|ref|ZP_02918273.1| hypothetical protein BIFDEN_01578 [Bifidobacterium dentium ATCC
           27678]
 gi|171278080|gb|EDT45741.1| hypothetical protein BIFDEN_01578 [Bifidobacterium dentium ATCC
           27678]
          Length = 547

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 156/480 (32%), Gaps = 78/480 (16%)

Query: 19  EIASHKLMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMS 70
           E+ S  L  R G +       G     + + PLG    DN+          T    + + 
Sbjct: 64  EVVS--LAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRSMVVTRGDVVGVD 121

Query: 71  VPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
              +    +WV SG    +     E L    R+    +     E+    +  + +K    
Sbjct: 122 TSIILPPAVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGDKLPENGLKD--- 178

Query: 128 LPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIF 185
                     +    E R    ++R+    ++D  S   L PE ++            IF
Sbjct: 179 --IVCPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQ-----------GIF 225

Query: 186 HRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             +  K++   + S P      +G    +E         T+ F   +   F  P  + ++
Sbjct: 226 --VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEMEFFVAPGTDEEW 283

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------- 291
                               +  H E   + L    +   R +++ + F F         
Sbjct: 284 HQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYKFGFQGSDWGELE 340

Query: 292 -----TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG- 337
                T + L   A   G D        G+ +   +     G  R + A +  ++D    
Sbjct: 341 GVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMAFLVDAYDVDEA 400

Query: 338 ------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       +     +AP K +++ +    ++     + +   L +    + +D+ G
Sbjct: 401 PNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQNLADDLRQHDWMIDYDEAG 459

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             IG ++   D +G PL V V    + D  V I+ R T  +E ++L++V +Y + R    
Sbjct: 460 A-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQERVALDKVADYVAARIGEK 518


>gi|167040110|ref|YP_001663095.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300914195|ref|ZP_07131511.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307724570|ref|YP_003904321.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|229558739|sp|B0K0N4|SYH_THEPX RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166854350|gb|ABY92759.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300889130|gb|EFK84276.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307581631|gb|ADN55030.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 418

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 138/431 (32%), Gaps = 35/431 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ +  +G    LP        +  +IRE  +  G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDILPSESYKWQYIEGLIREICDVYGFKEIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++             F  H       P   Y I   +R E RP+ G
Sbjct: 61  VRKEMYTFTDKGGRSITLKAEGTSPAVRAFIEHNLYAETQPTKLYYITPVYRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R RE        F      +      + ++ L+    L    + + +   P+     +
Sbjct: 120 --RLREHHQFGVEIFGAKNASADAEVISVAMTLLKK-LGLNNLELRINSVGCPVCRKNYN 176

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + +        +  C    + + I         + S   I +          D       
Sbjct: 177 KVLKDFLKDNLEYLCDDCKVRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKSHFE 236

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----------GKDHYVQMGS-- 316
           +       +    I    I   G  Y    +      D          G+   +      
Sbjct: 237 ELQKYLDIMGYDYIIDPRIVR-GLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGG 295

Query: 317 -------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  +G+G  R++  +     +  GI  P    P  I L  I    +  +     + 
Sbjct: 296 PSMPGVGFGMGLERLLLTL-----EQNGIEIPK---PEGIDLF-IAYVGEEAKLFTFALA 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G  V  D+M   + +Q   A+ L     +++G + + ++KV++K+   G   ++
Sbjct: 347 NKLRFNGLKVERDNMDRSLKAQMKYANKLNAKFAIVIGEEEMKENKVKLKNMRDGSEVEI 406

Query: 430 SLEEVINYASH 440
           S++E+     +
Sbjct: 407 SIDEIEQRIKN 417


>gi|297620023|ref|YP_003708128.1| histidyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379000|gb|ADI37155.1| histidyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 417

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 146/432 (33%), Gaps = 40/432 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           + Q  KG   +LP        +   +RE  +     E+  PT +S DL   ++G  D   
Sbjct: 1   MFQKPKGTRDFLPSEMLKRKFIAQKLREVFDNYNIKEICTPTFESFDLLCKKTG--DEIR 58

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            ++    D  D+ M   P     +   F +  K+    P  FY +   FR E  P+ G  
Sbjct: 59  SQLFVFKDHGDREMGLRPELTSSVARYFINEFKN-VPKPLKFYYLTNCFRYE-NPQAG-- 114

Query: 151 RSREFLMK------------DAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKS 192
           R REF               DA   +L  EG KH   K             +F    L  
Sbjct: 115 RYREFWQMGCELIGSNKCTADAEVLNLAIEGLKHINMKYEINIGHLGVLKGVFEEFNLSD 174

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                    I  +       + +  E++   S   + F I     +      ++ ++E+ 
Sbjct: 175 DESTQIRRLIDKEDIDGLKEVLNVIESEKGISISNIVFEILDLKGN---KEIIDILIEKL 231

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                +   + N K      E++ +   GI  G  +Y G  +       +   +G     
Sbjct: 232 QKFPKSIEALENLKEILEYVEHEYIINFGIARGLDYYTGMVFE-----IYGTKEGAKQVC 286

Query: 313 QMGSYGIGAMRVV------AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             G Y    + +       A       D   +   +     ++  I    +D+       
Sbjct: 287 GGGRYD-NLIELFEGEPTPAVGFAYGFDRIMLNIEEPEVNEEVIYITTAGNDKELTKESF 345

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+  +L +    V  D M  ++      A+ +     +I+G K + +  V IK  ++G +
Sbjct: 346 KLAKKLRENSKMVELDLMNRKLNKSLNFANNIKATKVIIIGKKDLENGMVSIKDMVSGEQ 405

Query: 427 EDMSLEEVINYA 438
             +  +E++NY 
Sbjct: 406 IQVKSDELLNYL 417


>gi|25028319|ref|NP_738373.1| histidyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|259507374|ref|ZP_05750274.1| histidine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|32130111|sp|Q8FPL5|SYH_COREF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|23493604|dbj|BAC18573.1| putative histidyl-tRNA synthetase [Corynebacterium efficiens
           YS-314]
 gi|259164999|gb|EEW49553.1| histidine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 429

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 134/434 (30%), Gaps = 41/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  + P    A   V      + +  G   + +P  +   L+        D   
Sbjct: 14  FSAPKGVPDYAPPRSAAFVAVRDAFITQAHLAGFEHIELPIFEETGLFARGVGESTDVVS 73

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR ++++   P     +      H      LP         FR E RP+ G  
Sbjct: 74  KEMYTFADRGERSVTLRPEGTAGVMRAVIEHSLDRGQLPVKLNYAGPFFRYE-RPQAG-- 130

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +     R +  LGL    +   S       P   
Sbjct: 131 RYRQLQQVGVEAIGVDDPALDAEIIALAD---RSYRSLGLTGFRLELTSLGDSNCRPAYR 187

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +F++     E     ++      +  +  +  ++ +   ++         T     
Sbjct: 188 QKLQDFLLNLPLDEETRRRAEINPLRVLDDKRAEVREMTADAPLMLDHLDDGCRTHFETV 247

Query: 265 EKLFDSLPENKR---VSARGIEVGH------IFY-FGTKYSLPMSATFKG--ADGKDHYV 312
             L D +           RG++         I    G +  +     + G  A      +
Sbjct: 248 TGLLDDMGVPYEINPRMVRGLDYYTKTTFEFIHDGLGAQSGIGGGGRYDGLMAQLGGQDL 307

Query: 313 QMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
               YG+G  R + A+  E    G+            +  + +    Q  + A   I   
Sbjct: 308 SGIGYGLGVDRTILALEAEGVTVGQERR-------VDVYGVPLG---QAAKKAMAGIIND 357

Query: 372 LSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L   G      + D G + G+    AD  G    +++G   + +  V +K      ++D+
Sbjct: 358 LRAAGISADMSYGDRGLK-GAM-KGADRSGSLYTLVLGENELDNGTVAVKDMRAHDQQDI 415

Query: 430 SLEEVINYASHRFS 443
           +L EV++    + +
Sbjct: 416 ALSEVVSALRAKLA 429


>gi|218706017|ref|YP_002413536.1| histidyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293405955|ref|ZP_06649947.1| histidyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|298381756|ref|ZP_06991355.1| histidyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300898382|ref|ZP_07116725.1| histidyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|226737073|sp|B7N6A2|SYH_ECOLU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218433114|emb|CAR14011.1| histidyl tRNA synthetase [Escherichia coli UMN026]
 gi|291428163|gb|EFF01190.1| histidyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|298279198|gb|EFI20712.1| histidyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300357922|gb|EFJ73792.1| histidyl-tRNA synthetase [Escherichia coli MS 198-1]
          Length = 424

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 133/437 (30%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     +    K   D            + S N  V+          D  +E+  +  
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPVLGDYLDEESREHF 237

Query: 272 -PENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|62185467|ref|YP_220252.1| seryl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81312384|sp|Q5L4Z0|SYS_CHLAB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|62148534|emb|CAH64305.1| seryl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 424

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 12/253 (4%)

Query: 8   LPILQENPRDAEIASHKL--MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           LP     P+     + KL  +           G  ++   G      +   +  +Q   G
Sbjct: 129 LPTFSFTPKHHVELNQKLQILDFKLPAKTSGSGWPAYKNQGVCLEWALLTYLLNKQREHG 188

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                 P L   ++   SG+   +  +  R+ D  ++++   PT E V+       I S 
Sbjct: 189 FQLWLPPLLVKHEILFGSGQIPKFDGQYYRVED-GEQSLYLIPTAEVVLNGFHSQEIFSE 247

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++LP  +      FR E         G++R  +F   + ++F  TP+ +  +Y KM    
Sbjct: 248 KDLPIYYAAFTPCFRREAGAAGAHERGLVRVHQFHKVEMFAF-TTPDQADQAYEKMLAVV 306

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I   L L        +G +    S     E  +       +V       DF      T
Sbjct: 307 EDILTELQLPYRLSLLSTGDMSFTASKTIDAEVWLPGQQSYYEVSSISQCTDFQSRRSET 366

Query: 238 DFDDIISLNSIVE 250
            + D       V 
Sbjct: 367 RYKDNRGKMHFVH 379


>gi|315185720|gb|EFU19487.1| glycyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 443

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 144/462 (31%), Gaps = 70/462 (15%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G + Q S+   G+   + + PLG +  +N+      E    R   + +    L  
Sbjct: 12  LCKRRGFVFQSSEVYGGLSSAWDYGPLGVELKNNIERFWWNEMVRKRRNIVGLDAAILMH 71

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
             +W  SG  +++   ++   +   R     I             +      R     F 
Sbjct: 72  PKVWEASGHVENFHDPLVDCKECKARFRADQIDLSAPCPECGA--KDSFTEPRQFNLMFK 129

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                  DE                 +    L PE ++  Y            RL +   
Sbjct: 130 THLGPVEDE-----------------STVVYLRPETAQGIYVNYKNCLQS--SRLKVPFG 170

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             +     +G    +E +       T  F   +   F  PSE+  + D      +     
Sbjct: 171 IAQ-----VGKAFRNEIVTKNFIFRTCEFEQMEMQFFVHPSEDKKWFDYWKAERMEYYRK 225

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFK 303
                     ++   D L    +     +++ + F FG          T Y L   + F 
Sbjct: 226 MGIRPEKLRFHQHGPDELAHYAKE---AVDIQYEFPFGWRELEGVHNRTDYDLSRHSQFS 282

Query: 304 GAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAP 346
           G D         + +   +     G  R V  V+  ++D + +          +   +AP
Sbjct: 283 GKDLSYFDDETRERYIPYIIETSAGLTRSVLMVLSDAYDEEELENGEKRTVLRFHPLIAP 342

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
             +++  +   D       + +   L     + F+D+ G  IG ++   D +G P  + V
Sbjct: 343 ITVAVFPLMRRD-GLDTYAQNLEEELRDH-FNTFYDESGA-IGRRYRRQDEVGTPYCITV 399

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             + + D  V +++R +  +  +   EV++         R V
Sbjct: 400 DYQTLEDDTVTLRYRDSMEQVRVHRNEVVSAIQQAIREYRRV 441


>gi|260887819|ref|ZP_05899082.1| histidine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260862425|gb|EEX76925.1| histidine--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 421

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 140/439 (31%), Gaps = 53/439 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
            +G    LP       +V  +IRE   R G  E+  P  +  +L++       D   KEM
Sbjct: 6   PRGTKDILPDTVAQWTHVEKVIRELCARYGYREIRTPIFEHTELFLRGIGETTDVVEKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               DR ++++   P +   +   +  +     +     + I   FR + RP+ G  R R
Sbjct: 66  YTFTDRGERSLTLRPENTASVVRSYLQNKLYAADALVKLFYIGSMFRYD-RPQAG--RYR 122

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLS 207
           EF      +              + V  +     LGL+ + +   S       P+  +  
Sbjct: 123 EFHQFGVEALGEENPAVDAE---IIVLAVEFLRALGLQELKLHLNSVGCPKCRPVYRERL 179

Query: 208 HEFIVLA------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            EF                +    ++   K+     +        D    +     +T  
Sbjct: 180 QEFFRPHLEELCTDCRSRFERNPLRLLDCKNEHCHALAEGAPRITD-CLCDECRVHFTEV 238

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH----- 310
            +  +        D+         RG++      F  KY+ P+ A    A G  +     
Sbjct: 239 QSYLTAAGIPFELDA------NLVRGLDYYTKTAFEVKYT-PLGAQSAVAGGGRYDGLVE 291

Query: 311 -----YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                      + +G  RV+ A+       K  + P+ +    + ++ +    +  +   
Sbjct: 292 EVGGPPTPGIGFAVGLERVLLAL------EKQELLPEELEAVDVFVVALG---EAAQIPA 342

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L         D  G  + +Q   A+        I+G   V ++   +K   T  
Sbjct: 343 FKLLHELRAAKLSAAMDFAGRSMKAQMKQANKKNARFVAILGEDEVKEASALLKDMKTSE 402

Query: 426 REDMSLEEVINYASHRFSN 444
           ++ ++L++ +        N
Sbjct: 403 QKKLALKDFVPALCVEVKN 421


>gi|56421965|ref|YP_149283.1| glycyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81675673|sp|Q5KUC1|SYG_GEOKA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|56381807|dbj|BAD77715.1| glycyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 460

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 115/357 (32%), Gaps = 55/357 (15%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++      + LPF   QI   FR+E+ P  
Sbjct: 152 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E  +      +  Y + F +  L S+ M+ ++  +     
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELQ------WFDYWKQFCKDWLLSLGMKEDNIRLRDHAK 265

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        +     FP            +   +             +  E  
Sbjct: 266 EELSHYSN------ATTDIEYHFPFGWGELWGIASRTDYDLKRHMEYSGEDFHYLDQETN 319

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              +P     S            G  + +L         +  +          G  R V 
Sbjct: 320 ERYIPYCIEPS-----------LGADRVTLAFMIDAYDEEELED---------GTTRTVM 359

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +              ++AP+K +++ +        D   +IY  L K    V +D+ G 
Sbjct: 360 HL------------HPALAPYKAAVLPLSKK---LADGAHRIYEELVKH-FMVDYDETG- 402

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  +    +   D +V ++ R T  +  + + E+  +   + +
Sbjct: 403 SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQVRLPIGELKAFLEEKIA 459


>gi|53723541|ref|YP_103004.1| histidyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|67639883|ref|ZP_00438712.1| histidine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|76811640|ref|YP_333748.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121598300|ref|YP_993153.1| histidyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124385953|ref|YP_001026072.1| histidyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126449975|ref|YP_001080660.1| histidyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|167002242|ref|ZP_02268032.1| histidine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167893949|ref|ZP_02481351.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167910640|ref|ZP_02497731.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167918669|ref|ZP_02505760.1| histidyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217421587|ref|ZP_03453091.1| histidine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|237812548|ref|YP_002896999.1| histidine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|254177586|ref|ZP_04884241.1| histidyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254189058|ref|ZP_04895569.1| histidyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254199950|ref|ZP_04906316.1| histidyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254206283|ref|ZP_04912635.1| histidyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|254260769|ref|ZP_04951823.1| histidine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297428|ref|ZP_04964881.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358302|ref|ZP_04974575.1| histidyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|81685079|sp|Q62JW5|SYH_BURMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123598924|sp|Q3JRQ5|SYH_BURP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227948|sp|A3MK74|SYH_BURM7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227949|sp|A2S2A3|SYH_BURM9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227950|sp|A1V4K0|SYH_BURMS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52426964|gb|AAU47557.1| histidyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76581093|gb|ABA50568.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121227110|gb|ABM49628.1| histidyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124293973|gb|ABN03242.1| histidine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126242845|gb|ABO05938.1| histidine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|147749546|gb|EDK56620.1| histidyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753726|gb|EDK60791.1| histidyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|148027429|gb|EDK85450.1| histidyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157806820|gb|EDO83990.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936737|gb|EDO92407.1| histidyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698625|gb|EDP88595.1| histidyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|217395329|gb|EEC35347.1| histidine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|237505085|gb|ACQ97403.1| histidine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238520494|gb|EEP83953.1| histidine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|243062059|gb|EES44245.1| histidine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254219458|gb|EET08842.1| histidine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 446

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 139/451 (30%), Gaps = 77/451 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYLGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +   S           + L
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINS-----------LGL 176

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLP 272
           A+           +++  +   + D    +  N +    T   A    V N     D L 
Sbjct: 177 AEERAAHRVELIKYLEQHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLG 236

Query: 273 ENKRVSARGIEV-----GHIFYFGTK-------YSLPMSATFKGADGKD----------- 309
           +  R    G++         F    +       Y+L +        G             
Sbjct: 237 DVSRAHFDGLQQLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDP 296

Query: 310 -------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQV 360
                         + +G  R++  + E             + P +  + +  +   D  
Sbjct: 297 LIEQLGGKPTAACGWAMGVERILELLKEEH-----------LVPEQEGVDVYVVHQGD-A 344

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKV 416
            R+    +  RL   G DV      +  G+ F      AD  G    VI G   V++  V
Sbjct: 345 AREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVANGTV 404

Query: 417 EIK-HRLTG------IREDMSLEEVINYASH 440
            +K  R TG      +++ + +E +  +  +
Sbjct: 405 SVKPLRGTGAEGEKNVQQSVPVESLTEFLIN 435


>gi|303244124|ref|ZP_07330462.1| glycyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302485509|gb|EFL48435.1| glycyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 576

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R+   ++E +++ +     +     VAP K+ +  +  + +   
Sbjct: 438 GEKVLPHVIEPSYGIDRITYCLLEHAYNEEEDRTYLKLKPQVAPIKVGVFPL-VNKEGMA 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I   L K G    +DD G  IG ++   D +G P  + V  + + D  + I++R 
Sbjct: 497 EIAMRIKDNLRKNGIIAEYDDSGA-IGRRYMRMDEVGTPFCITVDGRTLEDGTITIRYRD 555

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + ++EVINY  +   
Sbjct: 556 TREQIRIKIDEVINYIKNNIK 576



 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 63/190 (33%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESG----------- 84
            G   + PLG    +N+    R+         E+  PT+   ++   SG           
Sbjct: 30  AGFVDYAPLGTMLKNNIINTWRKHYIVNEEFYEIESPTITPYEVLKASGHVDNFTDPMVE 89

Query: 85  --------RYDSYGKE----------------------------------------ML-- 94
                   R D   +E                                        M   
Sbjct: 90  CKECLESFRADHIIEENIDIDTEGKTLEELDELIKKYNIRCPKCGGEFGDVKKYNLMFLT 149

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
            +     +     P   + +   FR     +RN LPF   QI   +R+E+ PR GV+R R
Sbjct: 150 SIGPGGKRTGYMRPETAQGIFIQFRRLASFFRNKLPFGVAQIGKSYRNEISPRQGVIRLR 209

Query: 154 EFLMKDAYSF 163
           EF   +A  F
Sbjct: 210 EFTQAEAEFF 219


>gi|254421409|ref|ZP_05035127.1| seryl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196188898|gb|EDX83862.1| seryl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 449

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G     ++ + + +   R G  E+  P L +++    SG+   + ++  +  DR+D  + 
Sbjct: 197 GAALERSLISFMLDRHTRAGYTEILPPILVNSESMQGSGQLPKFAEDGFK-CDRDD--LW 253

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  + +   LP  +      FR E     R   G++R  +F   + Y
Sbjct: 254 LTPTAEVPLTNLHRDEVLASDELPLNYCAYTPCFRREAGSYGRDTRGLIRLHQFNKVEMY 313

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F + PE S     K+      I  +L L    +   SG +G + +     E  + +   
Sbjct: 314 KF-VHPETSFDELEKLTADAEDILQQLKLPYRVIELCSGDLGFNATKTYDLEVWLPSAGK 372

Query: 218 ETQVFCSKDFMDF 230
             ++    + +DF
Sbjct: 373 YREISSCSNCVDF 385


>gi|160880206|ref|YP_001559174.1| glycyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160428872|gb|ABX42435.1| glycyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 456

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 148/446 (33%), Gaps = 47/446 (10%)

Query: 30  GMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWV 81
           G I Q S+   G+   + + PLG +  +N+    R    QNR  + E+    L +  +W 
Sbjct: 17  GFIFQGSEIYGGLANTWDYGPLGTRLKNNIKDAWRYYFIQNRDNSYELDSDILMNPRVWE 76

Query: 82  ESGRYDSYGKEMLRLAD---RNDKAMIYGPT----HEEVMTDIFRSHIKSYRNLPF---- 130
            SG   S+   +L       R+    +        + + MT +  S+    + +P     
Sbjct: 77  ASGHLSSFTDPLLDCKHCKTRHRADSLIQNYKKDLNVDTMTQLEMSNYIQEQKIPCPVCG 136

Query: 131 -TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + Y    +F             R      + +  L PE ++  Y         +  +L 
Sbjct: 137 ASNYTDIRQF------NLMFATKRGVTEDSSSTIYLRPENAQGEYVNYLNVMRSMRAKLP 190

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDF---PIPSENTDFDDIISL 245
                +           S  F  +  +  E Q FC K   D            F + + +
Sbjct: 191 FSIGQIGKAFRNEITPGSFTFRTIEFEQMEYQTFCKKGSDDELYQYFKDYGISFFEYLGI 250

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFK 303
           ++   ++                + L         G      F      ++S   +  + 
Sbjct: 251 DNNHLRFRDHEKLAHYAKAACDIEYLFPFGWGEINGTHNRTDFDLKRHQEFSKV-NLEYF 309

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLIN 353
             + K+     +     G  R++ A+         I  +     +     ++P K++++ 
Sbjct: 310 DENSKEKIIPYIIESTYGLDRIILAILFESLVEEKINENDSRLVLKISKILSPVKVNVLP 369

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  +     +   ++Y  L K      +D+ G  IG ++   D +G P  V +  + +  
Sbjct: 370 LIKNRHG--EKATEVYQLLRKHMM-ASYDESG-TIGKRYRRGDAIGTPYAVTIDDETLEK 425

Query: 414 SKVEIKHRLTGIREDMSLEEVINYAS 439
             + I+ R T  ++ ++LE V+    
Sbjct: 426 GLITIRDRDTMEQKVVALENVLEELR 451


>gi|330838612|ref|YP_004413192.1| Histidyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329746376|gb|AEB99732.1| Histidyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 420

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 140/439 (31%), Gaps = 53/439 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
            +G    LP       +V  +IRE   R G  E+  P  +  +L++       D   KEM
Sbjct: 5   PRGTKDILPDTVAQWTHVEKVIRELCARYGYREIRTPIFEHTELFLRGIGETTDVVEKEM 64

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               DR ++++   P +   +   +  +     +     + I   FR + RP+ G  R R
Sbjct: 65  YTFTDRGERSLTLRPENTASVVRSYLQNKLYAADALVKLFYIGSMFRYD-RPQAG--RYR 121

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLS 207
           EF      +              + V  +     LGL+ + +   S       P+  +  
Sbjct: 122 EFHQFGVEALGEENPAVDAE---IIVLAVEFLRALGLQELKLHLNSVGCPKCRPVYRERL 178

Query: 208 HEFIVLA------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            EF                +    ++   K+     +        D    +     +T  
Sbjct: 179 QEFFRPHLEELCTDCRSRFERNPLRLLDCKNEHCHALAEGAPRITD-CLCDECRVHFTEV 237

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH----- 310
            +  +        D+         RG++      F  KY+ P+ A    A G  +     
Sbjct: 238 QSYLTAAGIPFELDA------NLVRGLDYYTKTAFEVKYT-PLGAQSAVAGGGRYDGLVE 290

Query: 311 -----YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                      + +G  RV+ A+       K  + P+ +    + ++ +    +  +   
Sbjct: 291 EVGGPPTPGIGFAVGLERVLLAL------EKQELLPEELEAVDVFVVALG---EAAQIPA 341

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L         D  G  + +Q   A+        I+G   V ++   +K   T  
Sbjct: 342 FKLLHELRAAKLSAAMDFAGRSMKAQMKQANKKNARFVAILGEDEVKEASALLKDMKTSE 401

Query: 426 REDMSLEEVINYASHRFSN 444
           ++ ++L++ +        N
Sbjct: 402 QKKLALKDFVPALCVEVKN 420


>gi|50954005|ref|YP_061293.1| glycyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71657968|sp|Q6AHF7|SYG_LEIXX RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|50950487|gb|AAT88188.1| glycyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 463

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 144/449 (32%), Gaps = 65/449 (14%)

Query: 40  YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK--- 91
           + + PLG +  +N+        +R   +  G   +    +    +W  SG    +     
Sbjct: 35  WDYGPLGVELKENIKREWWNSFVRGRGDMVG---LDSAIILPTAVWEASGHVKVFSDPLT 91

Query: 92  EMLRLADRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           E L    R     ++     E            +  + P    Q        +RP  G+M
Sbjct: 92  ESLITHKRYRADHLFEAYEAEHGHPPANGLDDIADPDHPEKVGQWTP-----IRPFSGLM 146

Query: 151 RSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           ++   ++ D      + PE ++     +F  +  +               G IG    +E
Sbjct: 147 KTYLGIVDDESGLHYMRPETAQ----GIFTDFASVLQT---SRKKPPFGIGQIGKAFRNE 199

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                    T+ F   +   F  P  + ++ D     S            +    E   D
Sbjct: 200 ITPGNFIFRTREFEQMEIEFFVEPGTDEEWFDTWIDLSWEWFTGLGIKPENIRRFEHPKD 259

Query: 270 SLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GK 308
           SL    +   R I++ + F F                + L       G D         +
Sbjct: 260 SLAHYSK---RTIDIEYKFEFAGSEWGELMGVANRADFDLKTHIEHSGKDLSYFDQNKNE 316

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIK 355
            +   +     G  R + A +  ++D +              +     +AP K++++ + 
Sbjct: 317 RYVPFVIEPSFGLTRALMAFLVDAYDEEQAPNAKGGTDKRTVLHLDPRLAPVKVAVLPL- 375

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + ++        +  RL +    V +DD G  IG ++   D +G PL V V    + D  
Sbjct: 376 SRNEALSPLARGLADRLRQRRA-VDFDDSGA-IGRRYRREDEIGTPLAVTVDFDSLEDDA 433

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V ++ R +  +E + LE +  Y + R   
Sbjct: 434 VTVRDRDSMRQERIPLEGLDRYLAERLRE 462


>gi|37520285|ref|NP_923662.1| seryl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|46577178|sp|Q7NMP9|SYS_GLOVI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|35211278|dbj|BAC88657.1| seryl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 429

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 12/209 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G      + A + +     G IE+  P L +      +G+   + ++  R   
Sbjct: 169 FVTLMGDGALLERALIAFMLDRHRAHGYIEILPPYLVNTASMTGTGQLPKFAEDSFRC-- 226

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             D  +   PT E  +T+++R  I +   LP         FR E     R   G++R  +
Sbjct: 227 -RDDDLWLIPTAEVPVTNLYRDEILTDMQLPIHHCAFTPCFRREAGSYGRDTRGLIRLHQ 285

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE S   + K+      +  +L L    +   +G +G   +     E 
Sbjct: 286 FHKVELVKF-CRPEHSPTEHEKLVADAEDVLQQLELPYRVIELCTGDLGFGAARCFDLEV 344

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDF 239
            + +     ++    +F DF     N  F
Sbjct: 345 WLPSQNRYREISSCSNFEDFQARRANLRF 373


>gi|332299424|ref|YP_004441345.1| glycyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176487|gb|AEE12177.1| glycyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 517

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/509 (14%), Positives = 156/509 (30%), Gaps = 101/509 (19%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMS 70
           +I SH      G +   S        +Y +   G +  +N+     E   R     + + 
Sbjct: 10  KIVSHCK--EYGFVFPSSDIYDGLSAVYDYGQNGVELKNNIKRYWWEAMTRLHPNVVGID 67

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                  D+W  SG  D++      L D  D    Y      +   I +   K+ + +  
Sbjct: 68  SSIFMHPDIWRASGHIDAFND---PLIDNKDSKKRYRADV-LIEDQIAKIEGKAQKEIDK 123

Query: 131 TFYQIQLKFRDE------------------------------------------------ 142
              +    F DE                                                
Sbjct: 124 ARKRFGDSF-DESLYRTTNPRVKGYLDQAEALRQRMAKALNDNDLTELRQIIVDEKIVCP 182

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSK------HSYNKMFVSYLRIFH--RLGLKSIP 194
           +         R+F +  A     T EG+        +   +FV+YL +    R+ L    
Sbjct: 183 ISGTTNWTEVRQFNLMFATEVGSTAEGASTIYLRPETAQGIFVNYLNVQKTGRMKLPFGI 242

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            +     IG    +E +        + F   +   F  P    ++ +      +   +  
Sbjct: 243 AQ-----IGKAFRNEIVARQFIFRMREFEQMEMQYFVQPGTELEWFEYWKKLRLHWHYAL 297

Query: 255 PYAA-TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMS-------ATF 302
            +       H+                 +  G+    G    T + L            +
Sbjct: 298 GFPQSDYRYHDHDKLAHYANAATDIEYLMPFGYKEVEGIHSRTDFDLSRHEEFSGKKLRY 357

Query: 303 KGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLI 352
              D K+ Y   +    IG  R+  +V+  S+  +          +  P ++AP K++++
Sbjct: 358 YDPDTKESYVPYVVETSIGVDRMFLSVLCGSYKEEQTENGETRVVLSLPPALAPVKLAVL 417

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +   D    +   ++  RL  +     +D+  + IG ++   D +G P  + V  + + 
Sbjct: 418 PLVRKD-GLDEKAHEVV-RLLHLDFTCQYDE-KDSIGKRYRRQDAIGTPYCITVDHQTLE 474

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D+ V ++ R T  +E +++  + +  + R
Sbjct: 475 DNTVTLRDRDTMQQERIAISALHDLIAER 503


>gi|312140272|ref|YP_004007608.1| glycine-tRNA ligase glys [Rhodococcus equi 103S]
 gi|311889611|emb|CBH48928.1| glycine-tRNA ligase GlyS [Rhodococcus equi 103S]
          Length = 463

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/452 (15%), Positives = 145/452 (32%), Gaps = 74/452 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +    +W  SG  + +     E L
Sbjct: 34  WDYGPLGVELKENIKKQWWRNMVTSREDVVGLDSSVILPRQVWEASGHVEVFTDPLVECL 93

Query: 95  RLADRNDKAMIYGPTHEEV---------MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
               R+ +  +     E+          MT+I      +                 E + 
Sbjct: 94  NCHKRHRQDHLQEAYAEKHKLDDPDAVAMTEIVCPDCGTKGQ------------WTEPKA 141

Query: 146 RFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
             G++++    +        L PE ++     +FV++  +               G IG 
Sbjct: 142 FSGLLKTYLGPVDSETGLHYLRPETAQ----GIFVNFANVLTT---SRKKPPFGIGQIGK 194

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +E         T+ F   +   F  P E+ ++        +           +    
Sbjct: 195 SFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDYRMDWYTGLGINKDNLRLY 254

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD----- 306
           E    +  +    S R +++ + F F              T Y L   A   G D     
Sbjct: 255 EH---AQEKLSHYSKRTVDIEYRFQFQGSEWGELEGVANRTDYDLATHAKASGTDLSYFD 311

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKIS 350
              G+ +   +     G  R + A +  ++                 +     +AP K +
Sbjct: 312 QTSGERYTPYVIEPAAGLTRSLMAFLVDAYTEDEAPNAKGGVDKRTVLKLDRRLAPVKAA 371

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + + +       + +   L +   ++ +DD G  IG ++   D +G P  + V    
Sbjct: 372 VLPL-SRNADLSPKAKDLATTLRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCITVDFDT 428

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 429 LEDQAVTIRERDTMAQERVSLDQVEGYLAQRL 460


>gi|255658301|ref|ZP_05403710.1| histidine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260849618|gb|EEX69625.1| histidine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 421

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 141/440 (32%), Gaps = 47/440 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP      + +   IRE   R G  E+  P  +  +L+        D 
Sbjct: 1   MLTNAPRGTKDILPDTVGEWNYIEGKIREICGRYGFEEIRTPLFEHTELFHRGIGEGTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR  +++   P +   +   +  +     +     + I   FR + RP+ G
Sbjct: 61  VDKEMYTFEDRGGRSITLRPENTASVVRAYLQNKLYGDSSLVKLFYIGSMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R REF      S       +      + +  +     LGLK + +   S       P+
Sbjct: 120 --RMREFHQFGVESLGEENPMADAE---IIMLAVDFLQSLGLKDLKLSLNSVGCPKCRPV 174

Query: 203 GGDLSHEFI--VLADTGET----------QVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              +  ++    L D  E           ++   K   D P  ++     D    +   E
Sbjct: 175 YRKVLQDYFRDKLDDLCEDCQDRFERSPLRILDCKVDADKPYMADAPKITD-CLCDECRE 233

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +    +  ++   E   D          RG++      F  KY+ P+ A    A G  +
Sbjct: 234 HFEKVQSYLTNAGIEFELDPR------LVRGLDYYTKTAFEIKYA-PLGAQSAVAGGGRY 286

Query: 311 YVQMGSYGIGAMRVVA-------AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +   G      V         ++     G     P     F ++L       +  + 
Sbjct: 287 DGLIEEIGGKPTPAVGFATGLERVLLALEKQGLIPEQPKKTDAFVVAL------GEAAKA 340

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  +L + G     D  G  + +Q   A+       +I+G   V +S V +K    
Sbjct: 341 PAFTLLTKLRRAGLKASMDYAGRSMKAQMKQANKANARFALIIGEDEVKESCVMLKDMEK 400

Query: 424 GIREDMSLEEVINYASHRFS 443
            +++ +S + +I        
Sbjct: 401 SVQQKVSFDAIIEKLCAEVK 420


>gi|323692739|ref|ZP_08106967.1| glycyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323503181|gb|EGB19015.1| glycyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 462

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 120/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      + +Y + +    LK++ ++ +         
Sbjct: 214 FTFRTREFEQMELEFFCEPDTDLE------WFAYWKEYCINWLKALGIKED--------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E   F SK   D                  I   +   +     + +   
Sbjct: 259 -EMRARDHEQEELSFYSKATTD------------------IEFLFPFGWGELWGIADRTD 299

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +D                     G          F       +   +    +GA RV  A
Sbjct: 300 YDLTQHQNTS-------------GQD-----MTYFDDEKKIKYIPYVIEPSLGADRVTLA 341

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + I          +  ++AP KI ++ +        +  EK+Y  L K   +
Sbjct: 342 FLCAAYDEEEIGEGDVRTVLHFHPALAPVKIGVLPLSKK---LNEGAEKVYNELCKY-YN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  +       +D  V ++ R T  +  + + E+  Y 
Sbjct: 398 CEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSETDGAVTVRDRDTMEQVRVPITELKAYF 456

Query: 439 SHRFS 443
             +F 
Sbjct: 457 EDKFR 461


>gi|212715520|ref|ZP_03323648.1| hypothetical protein BIFCAT_00418 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660887|gb|EEB21462.1| hypothetical protein BIFCAT_00418 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 160/492 (32%), Gaps = 77/492 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +    +WV SG    +     E L    R+    +     E+   
Sbjct: 54  MVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K              +    E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 KLPENGLKD-----IVCPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGI 168

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
           +             +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 169 F-------------VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F  P  + ++                    +  H E   + L    +   R +++ + 
Sbjct: 216 EFFVAPGTDEEWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T + L   A   G D        G+ +   +     G  R + 
Sbjct: 273 FGFQGSDWGELEGVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           A +  ++D                +     +AP K +++ +    ++       + A L 
Sbjct: 333 AFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAHDLAADLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +    + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++
Sbjct: 392 QHDWMIDYDEAGA-IGRRYRREDEIGTPLCITVDFDTLDDQAVTIRERDTMQQERVALDK 450

Query: 434 VINYASHRFSNN 445
           V +Y + R    
Sbjct: 451 VADYVAARIGEK 462


>gi|262305777|gb|ACY45481.1| glu- + pro-tRNA synthetase [Phrynus marginemaculatus]
          Length = 134

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+ G   + G  +S      F+  + GK ++V   S+G+   R +  ++ +  D  
Sbjct: 15  SGRAIQGGTSHHLGQNFSKMFEIVFEDPETGKKNFVYQNSWGLT-TRTIGVMVMTHGDNT 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA +++ ++         +   Q     C+++ A L   G  V  D       
Sbjct: 74  GLVLPPQVASYQVIIVPCGITTSLSEKDKQDLLTKCKELEALLLAAGIKVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|227529785|ref|ZP_03959834.1| seryl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227350269|gb|EEJ40560.1| seryl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 431

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +A     +G++  + K + ++  
Sbjct: 163 FVYYLGLGAQLERAVYNFMLDEHMKDGYTEVLPPYIVNAASMYGTGQFPKFKKGVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP     +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRGDVIPAEELPVYVTALTPCFRSEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +   PE S     KM  +   I  +LGL    +   +  +    S     E 
Sbjct: 280 FNKVEMVKY-TKPEDSWDELEKMTANAENILKKLGLPYHVITLTTSDMSFTASETHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     +V    + +DF     +T + D   
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRMHTQYRDENG 372


>gi|307265229|ref|ZP_07546788.1| histidyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919851|gb|EFN50066.1| histidyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 418

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 133/442 (30%), Gaps = 57/442 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ +  +G    LP        +  +IRE  +  G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDILPSESYKWQYIEGLIREICDVYGFKEIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++             F  H       P   Y I   +R E RP+ G
Sbjct: 61  VRKEMYTFTDKGGRSITLKAEGTSPAVRAFIEHNLYAETQPTKLYYITPVYRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYN-------------------------KMFVSYLR 183
             R RE        F      +                                  +Y +
Sbjct: 120 --RLREHHQFGVEIFGAKSASADAEVISVAMTLLKKLGLNNLELRINSIGCPACRKNYNK 177

Query: 184 IFHRL---GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDF 239
           +        L+ +    +         +E   L         C +   D P I     D 
Sbjct: 178 VLKDFLKDNLEYLCDDCKVR-------YEINPLRVLDCKVESCQRITKDAPLITDYLCDD 230

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPM 298
                           Y    D    +  D        + ++ I        G +Y    
Sbjct: 231 CKSHFEELQKYLDIMGYDYIIDPRIVRGLDYYTKTAFEIISKDIGAQGTVCGGGRYD--- 287

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   G      +G +G+G  R++  +     +  GI  P    P  + L  I    
Sbjct: 288 --GLIEECGGPSMPGVG-FGMGLERLLITL-----EQNGIEIPK---PEGVDLF-IAYVG 335

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  +     +  +L   G  V  D+M   + +Q   A+ L     +++G + + ++KV++
Sbjct: 336 EEAKLFTFALANKLRFNGLKVERDNMDRSLKAQMKYANKLNAKFAIVIGEEEMKENKVKL 395

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           K    G   ++S++E+     +
Sbjct: 396 KDMRVGSEVEISIDEIEQRIKN 417


>gi|225351462|ref|ZP_03742485.1| hypothetical protein BIFPSEUDO_03057 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157806|gb|EEG71089.1| hypothetical protein BIFPSEUDO_03057 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 160/492 (32%), Gaps = 77/492 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +    +WV SG    +     E L    R+    +     E+   
Sbjct: 54  MVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K              +    E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 KLPENGLKD-----IVCPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGI 168

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
           +             +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 169 F-------------VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F  P  + ++                    +  H E   + L    +   R +++ + 
Sbjct: 216 EFFVAPGTDEEWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T + L   A   G D        G+ +   +     G  R + 
Sbjct: 273 FGFQGSDWGELEGVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           A +  ++D                +     +AP K +++ +    ++       + A L 
Sbjct: 333 AFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAHDLAADLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +    + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++
Sbjct: 392 QHDWMIDYDEAGA-IGRRYRREDEIGTPLCITVDFDTLDDQAVTIRERDTMQQERVALDK 450

Query: 434 VINYASHRFSNN 445
           V +Y + R    
Sbjct: 451 VADYVAARIGEK 462


>gi|218246037|ref|YP_002371408.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|226737067|sp|B7K2B6|SYH_CYAP8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218166515|gb|ACK65252.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 429

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 125/429 (29%), Gaps = 30/429 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
            G    LP        V  I  E  +R    E+  P  +   L+    G   D  GKEM 
Sbjct: 8   PGTRDILPEEIGYWQYVETITTEILSRAMYQEIRAPIFEQTSLFERGIGEATDVVGKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR D+++   P     +   +  +           +     FR E RP+ G  R R+
Sbjct: 68  TFKDRGDRSVTLRPEGTAGVVRAYLQNNLYATGGVQRLWYQGPMFRYE-RPQAG--RQRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F              +      +      I  +LGL+S+  + +   +G     +    A
Sbjct: 125 FHQIGLELLGSGDPRADVE---VIALATDILKKLGLQSL--KLDLNSVGDRNDRQRYREA 179

Query: 215 DTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   +     D  D    +     D        + Q            ++K FD +
Sbjct: 180 LVNYFLPYKNELDPDSQDRLERNPLRILDSKNQRTKEINQNAPSILQYLGDQSKKHFDQV 239

Query: 272 PENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRV----- 324
            +         ++      G  Y               +      G Y      +     
Sbjct: 240 QQLLTDLNISYQLNPCLVRGLDYYTHTAFEIQSDDLGAQATVCGGGRYDGLVAELGGPDT 299

Query: 325 --VAAVIESSHDGKGIIWPD--SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             V   I      + II        P  +  I I +  +        +  +L   G  V 
Sbjct: 300 PAVGWAIGM---ERLIILLKQRQTVPHCVPDIYIVSKGEQAEAQALILAQKLRFEGLTVE 356

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA-- 438
            D  G   G QF  AD  G    +++G +      +++K   T  +E +   ++++    
Sbjct: 357 LDLSGSAFGKQFKRADRSGAIACIVLGDEEAGTQTLQLKWLATKQQETLDQTQLVSEIGE 416

Query: 439 -SHRFSNNR 446
              + + ++
Sbjct: 417 LKAQLARHK 425


>gi|152980083|ref|YP_001353816.1| histidyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|151280160|gb|ABR88570.1| histidyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 449

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 130/445 (29%), Gaps = 64/445 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     +       G  ++  P ++   L+    G   D   KEM 
Sbjct: 14  KGMNDILPADAPLWELFENTVHTVLKSYGFQQIRTPIVEPTALFARGLGEVTDIVEKEMY 73

Query: 95  RLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N   +   P     +      H  +Y + P   +     FR E RP+ G  R R
Sbjct: 74  SFTDSMNGDQLTLRPECTAGVVRAALEHNLTY-DGPKRLWYAGPMFRHE-RPQRG--RYR 129

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG---------G 204
           +F    A +              M     R++  LGL+   +R E   IG          
Sbjct: 130 QFHQIGAEAIGFAGPDIDAELIMMCQ---RLWDDLGLQD--VRLELNSIGNAEERNKHRA 184

Query: 205 DLSHEFIVLADTGETQV--------FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           DL   F   AD  +T+             D  +  +         ++       +     
Sbjct: 185 DLIAYFEKNADLLDTEAQKRLHSNPLRILDTKNPTMQDMVNAAPKLLDYLGEESRAHFEG 244

Query: 257 AATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGT--------KYSLPMSATFKGA 305
                 HN   F   P          R +        G+        +Y  P+   F G 
Sbjct: 245 VQKILRHNAIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRY-DPLVEMFGG- 302

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                      + +G  R++   +  +   +        AP +  +  +   ++    A 
Sbjct: 303 ----KPTPACGFAMGVERLLE--LMKASGEQF-------APNQCDVYIVHQGEEAQLQAS 349

Query: 366 EKIYARLSKVGCDVFWDDMGEQ-IG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +  RL   G DV         IG  +     AD  G    VI+G   ++     +K  
Sbjct: 350 V-VAERLRDAGLDVVLHCAAATGIGSFKSQMKRADGSGAAYAVIIGEDEIAQGTAVVKEM 408

Query: 422 LT----GIREDMSLEEVINYASHRF 442
                 G +  +  E + +Y   + 
Sbjct: 409 RNAEAAGNQASVPFEGIADYLVDQI 433


>gi|262305783|gb|ACY45484.1| glu- + pro-tRNA synthetase [Prokoenenia wheeleri]
          Length = 128

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S R I+ G   + G  +S      ++  +G   +    S+G+   R +  V+    D +G
Sbjct: 15  SGRAIQGGTSHHLGQNFSKMFEIVYEXQEGNKKFXYQNSWGLT-TRTIGVVVMVHGDNQG 73

Query: 338 IIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
           ++ P  +A  ++ ++     D      + C+K  A L+  G     D     + G
Sbjct: 74  LVLPPQIASIQVIVVPCGVTDAMDELINNCKKFEALLTNAGVRCKGDYRDNYKPG 128


>gi|227833623|ref|YP_002835330.1| glycyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184626|ref|ZP_06044047.1| glycyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454639|gb|ACP33392.1| glycyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 459

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/467 (14%), Positives = 156/467 (33%), Gaps = 76/467 (16%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVE 82
           L+ + G I+  S+  + + PLG +  +N+         ++    + +    +Q   +WV 
Sbjct: 17  LVYQAGEIYGGSRSAWDYGPLGVELKENIKRQWWRHMVQSRDDVVGVDTSVIQPRQVWVS 76

Query: 83  SGRYDSYGKEMLRLADRNDKAMI--YGPTHEEVMTDIFRSHIKSYRN----LPFTFYQIQ 136
           SG  + +   ++       +         +EE       + +    +     P  +    
Sbjct: 77  SGHVEVFTDPLVESKHTGKRYRADHLIEAYEEKHGHEPANGLADINDPETGQPGDWT--- 133

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                E +   G++++    + D      L PE ++  +             +  K++  
Sbjct: 134 -----EPKAFSGLLKTFLGPVDDEQGLHYLRPETAQGIF-------------VNFKNVMT 175

Query: 196 RAESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            A   P      IG    +E         T+ F   +   F  P E+ ++      +   
Sbjct: 176 SARMKPPFGIANIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDDRFN 235

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSL 296
                     +    E       +    S R ++V + + F              T Y L
Sbjct: 236 WYIDLGIKKENLRLYEH---PQEKLSHYSKRTVDVEYAYNFKGSKWGELEGVANRTDYDL 292

Query: 297 PMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----------- 337
            +     G D        G+     +     G  R + A +  ++D +            
Sbjct: 293 SVHTKGSGEDLSYFDQEAGERWTPYVIEPAAGLGRAMMAFLIDAYDEEEAPNAKGGTDKR 352

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +     +AP K++++ +   +++      ++  +L +   +V +D  G  IG ++   
Sbjct: 353 VVLRLDRRLAPVKVAVLPLSKKEELSTP-ARELANKL-RANWNVEFDVSGA-IGRRYRRQ 409

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +G P  V      + D+ V ++ R +  +E + L+E+  Y + R 
Sbjct: 410 DEIGTPFCVTYDFDTLEDNAVTVRERDSMEQERVKLDELEAYLAARL 456


>gi|182685058|ref|YP_001836805.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|229558735|sp|B2IN41|SYH_STRPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|182630392|gb|ACB91340.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 429

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 140/446 (31%), Gaps = 61/446 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPPESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKEAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +             RG++     IF F     G   ++     
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +G+  P   A   + +  +    
Sbjct: 288 YDGLVSYFGGPETAGFG-FGLGVERLLLIL-----EKQGVTLPIENA-LDVYIAVLG--- 337

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +
Sbjct: 338 EGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFVAKTLITLGESEVESGQVTV 397

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K+  T     +SLE +    S  F  
Sbjct: 398 KNNQTREEVQVSLETISQNFSEIFEK 423


>gi|72161265|ref|YP_288922.1| glycyl-tRNA synthetase [Thermobifida fusca YX]
 gi|123747241|sp|Q47RL8|SYG_THEFY RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|71914997|gb|AAZ54899.1| glycyl-tRNA synthetase [Thermobifida fusca YX]
          Length = 462

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/450 (14%), Positives = 143/450 (31%), Gaps = 70/450 (15%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV         +     + +    + + ++W  SG  D++      L 
Sbjct: 35  WDYGPLGVELKNNVKRQWWRAMVQEREDIVGLDSCVILAREVWEASGHVDAFVD---PLT 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD------ELRPRFGVMR 151
           +       +   H     +    H K   N       +            E R   G++R
Sbjct: 92  ECQSCHKRFRADHLTEAYE--AKHGKPPANG---LADLNCPHCGAKGAFTEPRMFSGLLR 146

Query: 152 SR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +    +  ++    L PE ++     +F++Y  +          +      IG    +E 
Sbjct: 147 TYVGPVQDESGLAFLRPETAQ----GIFINYKNVEQS---SRRKIPFGIAQIGKSFRNEI 199

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P  + ++        +           +    E   + 
Sbjct: 200 TPGNFIFRTREFEQMEVEFFVRPGTDEEWHQYWIDTRLQWYIDLGINKDNLRLYEHPKE- 258

Query: 271 LPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKD 309
             +    S R +++ + F F              T Y L   +   G D           
Sbjct: 259 --KLSHYSKRTVDIEYRFNFAGSEWGELEGIANRTDYDLSTHSKRSGTDLSYFDQETNTR 316

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
               +     G  R +   +  ++                 +     +AP K +++ +  
Sbjct: 317 FIPYVIEPSAGVDRTMLTFLLDAYTEDEAPNAKGKMEKRVVMRLDPRLAPVKAAVLPLSR 376

Query: 357 H---DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +       RD   K+  R +     V +DD G  IG ++   D +G P  V +    + D
Sbjct: 377 NADLSPKARDLAAKLRKRWN-----VEFDDAGA-IGRRYRRQDEIGTPFCVTIDFDTLED 430

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + V ++ R +  +E +S+++V  Y + R +
Sbjct: 431 NAVTVRERDSMAQERISIDQVEQYLAERLA 460


>gi|323188368|gb|EFZ73660.1| histidyl-tRNA synthetase [Escherichia coli RN587/1]
          Length = 424

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRVLGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|53719148|ref|YP_108134.1| histidyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|126453409|ref|YP_001066491.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|167719270|ref|ZP_02402506.1| histidyl-tRNA synthetase [Burkholderia pseudomallei DM98]
 gi|167738266|ref|ZP_02411040.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167815456|ref|ZP_02447136.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167845407|ref|ZP_02470915.1| histidyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167902398|ref|ZP_02489603.1| histidyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|242314906|ref|ZP_04813922.1| histidine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254179552|ref|ZP_04886151.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|81690387|sp|Q63UT2|SYH_BURPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227951|sp|A3NVX0|SYH_BURP0 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52209562|emb|CAH35515.1| histidyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|126227051|gb|ABN90591.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|184210092|gb|EDU07135.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|242138145|gb|EES24547.1| histidine--tRNA ligase [Burkholderia pseudomallei 1106b]
          Length = 446

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 135/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYLGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +              +    + L D    
Sbjct: 182 AHRVELIKYLEQHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRA 241

Query: 274 NKRVSARGIEVGH-IFYFGTK-------YSLPMSATFKGADGKD---------------- 309
           +     R ++  +  F    +       Y+L +        G                  
Sbjct: 242 HFDGLQRLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E             + P +  + +  +   D   R+  
Sbjct: 302 GGKPTAACGWAMGVERILELLKEEH-----------LVPEQEGVDVYVVHQGD-AAREQA 349

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
             +  RL   G DV      +  G+ F      AD  G    VI G   V++  V +K  
Sbjct: 350 FIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVANGTVSVKPL 409

Query: 421 RLTG------IREDMSLEEVINYASH 440
           R TG      +++ + +E +  +  +
Sbjct: 410 RGTGAEGEKNVQQSVPVESLTEFLIN 435


>gi|67924788|ref|ZP_00518188.1| Seryl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
 gi|67853356|gb|EAM48715.1| Seryl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
          Length = 427

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 77/205 (37%), Gaps = 12/205 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L +++    +G+   + +E  ++ D +   + 
Sbjct: 176 GAALERALINFMLDQQISAGYLEVMPPVLINSEALQGTGQLPKFAEESFKVPDDD---LW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++ S I     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYSSEILEAEKLPIKHCAFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+  + ++      I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KL-VHPETSEVEHQQLVKDAEAILQLLKLPYRVLELCTGDLGFGATKCYDLEVWLPSSNS 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDI 242
             ++    +  DF     N  F + 
Sbjct: 352 YREISSCSNCWDFQARRANIRFKEK 376


>gi|227495136|ref|ZP_03925452.1| glycine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831588|gb|EEH63971.1| glycine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 474

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/454 (15%), Positives = 152/454 (33%), Gaps = 79/454 (17%)

Query: 40  YSWLPLGQKALDNVN-----AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK--- 91
           + + PLG +  +N+       ++R+ ++  G   +    +    +W  SG   ++     
Sbjct: 46  WDYGPLGVELKENIKKAWWSRVVRQREDVVG---LDSSVILPRQVWEASGHVTAFTDPLI 102

Query: 92  EMLRLADRN------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           E L    R       ++        EE +T    +         +T          E R 
Sbjct: 103 ECLSCHKRLRQDNLVEEYAEKKGVAEEDVTMDVIACPNCGNRGQWT----------EPRA 152

Query: 146 RFGVMRSREFLM---KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             G++++  FL     ++    + PE ++     +FV++  +               G I
Sbjct: 153 FSGLLKT--FLGPVDDESGLHYMRPETAQ----GIFVNFANVMTS---ARRKPPFGIGQI 203

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           G    +E         T+ F   +   F  P  + ++        +              
Sbjct: 204 GKSFRNEITPGNFIFRTREFEQMELEFFVAPGTDEEWHQYWIDERLAWYTDLG---IDPE 260

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT-------- 301
           H         +    S R +++ + F F              T Y L   A         
Sbjct: 261 HLRLYEHPQEKLSHYSKRTVDIEYTFGFQGSEWGELEGIANRTDYDLSTHAEASGSKLDY 320

Query: 302 FKGADGKDHYVQMGSYGIGAMR-VVAAVIESSHDGKGII------------WPDSVAPFK 348
           F     +     +     G  R ++A +IE+  + +                   +AP K
Sbjct: 321 FDQEKNERWTPYVIEPSAGLTRSLMAFLIEAYCEDEAPNAKGGIDTRVVLKLDPRLAPVK 380

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   +++     +++ A L K   +V +D+ G  +G ++   D +G P  +    
Sbjct: 381 VAVLPLSKKEELATP-AKELAAELRK-RWNVEYDEAGA-VGRRYRRQDEIGTPFCITYDF 437

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + D  V I+ R T  +  + L+EV++Y + R 
Sbjct: 438 DSLEDGAVTIRDRDTMEQVRVKLDEVVSYLNERL 471


>gi|116620657|ref|YP_822813.1| histidyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122255184|sp|Q028M4|SYH_SOLUE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116223819|gb|ABJ82528.1| histidyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 414

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 131/435 (30%), Gaps = 53/435 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY- 89
           MI +  KG    LP   +  + V  + R         E+  P  +   L+      ++  
Sbjct: 1   MI-KAVKGTRDLLPPSTEVWNRVEQVARAIFRAYNYHEIRTPIFEETQLFSRGVGTETDI 59

Query: 90  -GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR+  ++   P +   +   +  H    R      Y I   FR E RP+ G
Sbjct: 60  VTKEMYTFEDRDGSSLTLRPENTASVIRAYIEHRLDQRPGVQKLYYIGPMFRRE-RPQKG 118

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI--------------- 193
             R R+F    A +              +    + I   +GL                  
Sbjct: 119 --RYRQFFQIGAEAIGSESPVVDAE---VIELVVEILKGVGLSGFKLLINSVGDHNCRPQ 173

Query: 194 ---PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIV 249
               ++AE       +  +    A+T   +V   K   D PI        D         
Sbjct: 174 YVEKLKAELKDKAAGMCGDCQRRAETNPLRVLDCKVEADQPIIDALPSIVDYLCEPCRAH 233

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---AD 306
            +    Y     +  E     +           EV H    G + S+     + G   + 
Sbjct: 234 FEAVKSYLTDRGIEYEVRPRMVRGLDYYMRTTFEVVH-GALGAQNSVLGGGRYDGLAESL 292

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G   +     + IG  R+V +V     +G         +   + +  +    +       
Sbjct: 293 GSRVHAPGIGFSIGEDRLVMSV-----EGDQPA-----SQLDLCIAPLG---EAAVRHAA 339

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLL---GFPLQVIVGSKFVSDSKVEIKHRLT 423
            +     + G  V   +     G      +L    G    +I+G   ++  +  +K+  T
Sbjct: 340 ILARDFRRSGHSVELVE-----GKLKRAMELANKFGARYTLIIGDNEIAAGRYALKNMAT 394

Query: 424 GIREDMSLEEVINYA 438
           G + +++ +E+    
Sbjct: 395 GEQVELTRDEIAARL 409


>gi|288906393|ref|YP_003431615.1| histidyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|306832440|ref|ZP_07465593.1| histidine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325979407|ref|YP_004289123.1| HTH-type transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288733119|emb|CBI14700.1| histidyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|304425480|gb|EFM28599.1| histidine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325179335|emb|CBZ49379.1| HTH-type transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 425

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 138/447 (30%), Gaps = 63/447 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V A+ RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPSESAKWQYVEAVARETFKKYNYSEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS +++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F  LG+K + +   +       
Sbjct: 120 AG--RLREFHQVGVECFGSANPATDVETIAM--AYQ-LFQTLGIKDVTLHLNTLGSAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPMREQLSKDSQRRLDENPLRVLDSKEKEDKIAVENAPSILDYLDDESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLP--------- 297
                            +  +          RG++     IF F T              
Sbjct: 235 AHFDAVRSML-------ETLNIPYVIDTNMVRGLDYYNHTIFEFITTVDKSELTICAGGR 287

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             +  +  DG +       +G G        +    + +GI  P       + +  +   
Sbjct: 288 YDSLVEYFDGPETP----GFGFGLG---LERLLLILEKQGIELPVE-KEMDVYIAVLG-- 337

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q       ++   +   G     D +G +I +QF  AD       + +G   +   +V 
Sbjct: 338 -QGANLKALELVQAIRNQGFSAERDYLGRKIKAQFKSADAFNAKTIITLGESEIEAGQVA 396

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           +K+  T     +S +E+ N  +   + 
Sbjct: 397 VKNNKTREEVTVSFDEITNNFAEVLNK 423


>gi|17545935|ref|NP_519337.1| histidyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|32130128|sp|Q8Y029|SYH_RALSO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|17428230|emb|CAD14918.1| probable histidyl-trna synthetase (histidine--trna ligase)(hisrs)
           protein [Ralstonia solanacearum GMI1000]
          Length = 432

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 130/439 (29%), Gaps = 60/439 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 8   KGMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMY 67

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E +P+ G  R R
Sbjct: 68  SFTDALNGEQLTMRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-KPQRG--RYR 123

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +              M     R++  LGL  + +          RA      
Sbjct: 124 QFHQVGVEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQAEERAAHRADL 180

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F  + D    +   +         +         +   I        A    V 
Sbjct: 181 IKYLEGFQDILDEDSKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGEESCAHFEGVQ 240

Query: 264 NEKLFDSLPE-NKRVSARGIEV-------GHIFYFGTKYSLP----MSATFKGADGKDHY 311
                +++P        RG++              G + ++          +   GK   
Sbjct: 241 KLLKANNIPFTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAP 300

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDACEK 367
                + +G  R++  + E +           +AP      + +++     QV       
Sbjct: 301 A--CGWAMGVERIIELLREEN-----------LAPEPQGSDVYIVHQGDEAQVQALVA-- 345

Query: 368 IYARLSKVGCDVFWDD----MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
              RL   G DV              SQF  AD  G    VI+G   V+   V+IK  R 
Sbjct: 346 -AERLRDAGLDVILHASAEGRNGSFKSQFKRADASGAAYAVIIGDDEVASGVVQIKPLRG 404

Query: 423 T---GIREDMSLEEVINYA 438
                 ++ +  +++++  
Sbjct: 405 DPNADAQQTVPSDQLVDRL 423


>gi|74313040|ref|YP_311459.1| histidyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|123745955|sp|Q3YZ38|SYH_SHISS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|73856517|gb|AAZ89224.1| histidine tRNA synthetase [Shigella sonnei Ss046]
 gi|323169042|gb|EFZ54719.1| histidyl-tRNA synthetase [Shigella sonnei 53G]
          Length = 424

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 138/446 (30%), Gaps = 65/446 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVS----YLRIFHRLGLK-SIPMRAESGPIGGDL 206
            R+F       F L           M  +     L IF  + L+ +     E+     D 
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAELI-MLTARWWRALGIFEHVTLELNSIGSLEARANYRDA 180

Query: 207 SHEFIVLADTGETQVFCSKDFM------DFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
              F+        +    + +       D   P      +D  +L   +++ +  + A  
Sbjct: 181 LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGL 240

Query: 261 DVHNEKLFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKD 309
               E    +     +   RG++     +F       G++ ++     + G      G+ 
Sbjct: 241 CKLLESAGIAY-TVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRA 299

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R+V  V   +                +  I + A     + A   + 
Sbjct: 300 TPAV--GFAMGLERLVLLVQAVN---------PEFKADPVVDIYLVASGADTQSAAMALA 348

Query: 370 ARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKV 416
            RL             E  G +             FA AD  G  + V++G   V++   
Sbjct: 349 ERL-----------RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTA 397

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            +K   +G +  ++ + V  +     
Sbjct: 398 VVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|269123830|ref|YP_003306407.1| histidyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268315156|gb|ACZ01530.1| histidyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 414

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 142/433 (32%), Gaps = 43/433 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G+        +  + +    ++  ++ G   +  P L+  +L+  +     D 
Sbjct: 1   MKFETLRGMKDMFSQEVEKYNFIVNTAKKIFDKYGYTNIITPILEETELFKRAVGDETDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++   P     +   + +      N    +Y     +R E  P+ G
Sbjct: 61  VSKEMYTFMDKGDRSITMRPEGTAGVVRAYLNAGFHKSNPNVKWYYYGPMYRYEA-PQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------- 199
             R REF      SF +           M          LG+  I +   S         
Sbjct: 120 --RYREFHQFGVESFGIRSAFLDAELITM---ACEFLDNLGITDIYVELNSLGSVESRIT 174

Query: 200 ---------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                          LS +  + A+    +VF SKD  D  +        D     S + 
Sbjct: 175 YIKELKKYLLNNIDKLSDDSKIRAEKNPLRVFDSKDEGDQKVLENAPKLHDFFDEESKIF 234

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                Y       N   F+   E      RG++      F  K +   + +     G+  
Sbjct: 235 FEELKY-------NLDEFNIKYEINPSLVRGLDYYSDTVFEIKSNKLGAQSTILGGGRYD 287

Query: 311 YVQMGSYGIGA-MRVVAAVIESSH--DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +     GI       AA IE       + ++        K+ +I      +  +     
Sbjct: 288 KLTEILAGIKVPAVGFAAGIERLSMIMDESLLSKKD---KKVFIIYF----EETKKYLFD 340

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L K   +V ++   +   +Q   A+ +G    +I+G   ++  K+  K   TG +E
Sbjct: 341 IIKILRKNDVNVEFEYSIKGFSAQMKKANKVGANYVLILGENEINSGKITFKDFKTGNQE 400

Query: 428 DMSLEEVINYASH 440
           ++++ E+I    H
Sbjct: 401 EITITEMIERIKH 413


>gi|169829162|ref|YP_001699320.1| glycyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|238688185|sp|B1HTI6|SYG_LYSSC RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|168993650|gb|ACA41190.1| Glycyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 461

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 117/359 (32%), Gaps = 59/359 (16%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  +  PF   QI   FR+E+ P  
Sbjct: 153 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKRTPFGIAQIGKSFRNEITPGN 212

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E  +      + SY + F +  L ++ M+ +S  +     
Sbjct: 213 FTFRTREFEQMELEFFCKPGEDLE------WHSYWKEFCKNWLLNLGMKEDSMRLRDHED 266

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        +     FP            +   + +         + +     
Sbjct: 267 DELSHYSN------ATTDIEFKFPFGWGELWGIADRTDYDLKQHMEHSGEDFTYIDPVSN 320

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              +P     S            G  + +L         +                    
Sbjct: 321 DRYIPYCIEPS-----------LGADRVTLAFLCDAYDEE-------------------- 349

Query: 327 AVIESSHDGKG--IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              E   D K   + +  ++APFK +++ +        D    ++A L K    V +D+ 
Sbjct: 350 ---ELEGDDKRTVLRFHPAIAPFKAAVLPLSKK---LSDEATDVWAELRKA-FPVDFDES 402

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + IG ++   D +G P  +        D +V ++HR +  +E M + EV  Y      
Sbjct: 403 -QSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHRDSMTQERMPISEVKAYIEKHLQ 460


>gi|283458533|ref|YP_003363161.1| glycyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134576|dbj|BAI65341.1| glycyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 502

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 130/408 (31%), Gaps = 71/408 (17%)

Query: 53  VNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
           +     ++     G  E++ P   +   W E   +    K  L   D  +      P   
Sbjct: 148 LENFEAKKGRPAEGMDEIACPNCGTRGEWTEPQNFSGLMKTYLGPVDNEEGLHFLRPETA 207

Query: 112 EVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           + +   F + +  S +  PF   QI   FR+E+ P   + R+REF   +   F + P+ +
Sbjct: 208 QGIFVNFNNVVTASRKRPPFGIGQIGKSFRNEITPGNFIFRTREFEQMEIEYF-VHPDDA 266

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              +N+                                             +    +  F
Sbjct: 267 DKYFNE---------------------------------------------WVEDCWNWF 281

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                N D      +        +      +           E   V+ R       +  
Sbjct: 282 VDLGINPDNMRRFDVPQEERAHYSAGTIDVEYRFGFQGSEWGELMGVANR-----TDYDL 336

Query: 291 G--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----------- 337
           G   ++S      F  A G+ +   +     G  R + A +  ++               
Sbjct: 337 GVHNEHSNAKLEYFDQATGERYVPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDKR 396

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +     +AP K +++ +    +   +   K+   L  +  +V +D+ G  IG ++   
Sbjct: 397 VVLKLDPRLAPVKAAVLPLSKKAE-LSEPATKLANELRGLW-NVDYDEAGA-IGRRYRRQ 453

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D +G P  + V    + D  V I+ R T  +E ++L++V +Y + R +
Sbjct: 454 DEIGTPFCITVDFDTLEDQAVTIRERDTMNQERVALDQVKSYLAARLA 501


>gi|217316805|gb|ACK37808.1| putative glutamyl-prolyl tRNA synthetase [Ombrastacoides pulcher]
          Length = 134

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+G+   R +  +I    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGLT-TRTIGVMIMVHGDDK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +               DAC K+ A L+  G     D   
Sbjct: 74  GLVLPPRVASVQAIIMPVGITAKSSEQEKSNLVDACNKLSADLNAAGVRARCDLRD 129


>gi|90961829|ref|YP_535745.1| histidyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|123086786|sp|Q1WTV0|SYH_LACS1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|90821023|gb|ABD99662.1| Histidyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 431

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 147/443 (33%), Gaps = 62/443 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP        V    RE   +    EM  P  +S +++   SG   D 
Sbjct: 1   MKYQRPKGTADILPSESAKWQYVEEKARELFKKYRYEEMRTPIFESFEVFSRTSGETSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    + RS +++         PF  Y +   FR E 
Sbjct: 61  VTKEMYDFYDKGDRHITLRP---EGTAGVVRSFVENKLYGPEVQKPFKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R REF      +F +           M V  L+     GL S+ +   +    
Sbjct: 117 RPQSG--RLREFHQIGVEAFGVDNPTLDVEVMAMAVDLLK---SFGLNSLRVAVNTLGDL 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +      D ++ 
Sbjct: 172 ETRNNYRQALIDYLEPFEAELSDDSKERLHKNPLRVLDSKDEKDKEIVANAPSILDYLTE 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT---- 301
           ++  + +    +  +D+  E + DS                IF   +  S   +      
Sbjct: 232 DA-QKHFETVKSLLNDLGIEYVIDSNMVRGLDYYNH----TIFEIMSD-SKAFNGKWTTV 285

Query: 302 -----FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                + G     G      +G +G+G  R++  +     D +    P    P  + ++ 
Sbjct: 286 CAGGHYSGLVEQLGGPQTPGVG-FGLGVERLLLIL-----DAEEDTLPIEN-PLDVYVVG 338

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I     V      K+   L   G     D +  +   QF  A+ L     + +G   + +
Sbjct: 339 IG---DVTNAVTLKLVQNLRHQGFTADRDYLNRKPKGQFKSANRLNARFTLTIGETELQE 395

Query: 414 SKVEIKHRLTGIREDMSLEEVIN 436
            +  +K    G    + L +V N
Sbjct: 396 QEANLKFMKNGNEISVKLADVEN 418


>gi|295839019|ref|ZP_06825952.1| glycine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827291|gb|EFG65335.1| glycine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 460

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 144/444 (32%), Gaps = 60/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRNWWRYMVTSRDDVVGLDSSVILATEVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
             + +         +EE    +    +    +L       +  F  E +   G++ +   
Sbjct: 93  SCHKRYRADHLEEAYEEKHGHLPTGGL---ADLNCPNCGNKGTF-TEPKQFSGLLETHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVL 213
                     L PE ++  +          F ++ L S          +G    +E    
Sbjct: 149 PTQDTGSVAYLRPETAQGIFTN--------FAQVKLTSRRKPPFGIAQMGKSFRNEITPG 200

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                T+ F   +   F  P E+  + +                  +    E   +   +
Sbjct: 201 NFIFRTREFEQMEMEFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWFEHPKE---K 257

Query: 274 NKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYV 312
               S R  ++ + F FG             T Y L   A   G D        G++   
Sbjct: 258 LSHYSKRTADIEYRFQFGGSEWGELEGVANRTDYDLSAHAKASGQDLSYRDQEAGENWTP 317

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R + A +  ++                 +     +AP K +++ +  + +
Sbjct: 318 YVIEPAAGVGRTMLAFMLDAYAEDEAPNAKGKLEKRVVMRLDPRLAPVKAAVLPLSRNPE 377

Query: 360 VCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 + + A L +    D  +DD G  IG ++   D +G P  V V    + D+ V +
Sbjct: 378 -LSPKAKSLAAALRQHWNID--FDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTV 433

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +E +SL+++  Y S R 
Sbjct: 434 RERDTMKQERVSLDQIEGYLSSRL 457


>gi|302518917|ref|ZP_07271259.1| glycyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|318059913|ref|ZP_07978636.1| glycyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318081299|ref|ZP_07988631.1| glycyl-tRNA synthetase [Streptomyces sp. SA3_actF]
 gi|333027254|ref|ZP_08455318.1| putative glycyl-tRNA synthetase [Streptomyces sp. Tu6071]
 gi|302427812|gb|EFK99627.1| glycyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|332747106|gb|EGJ77547.1| putative glycyl-tRNA synthetase [Streptomyces sp. Tu6071]
          Length = 460

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 144/444 (32%), Gaps = 60/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRNWWRYMVTSRDDVVGLDSSVILATEVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
             + +         +EE    +    +    +L       +  F  E +   G++ +   
Sbjct: 93  SCHKRYRADHLEEAYEEKHGHLPPGGL---ADLNCPNCGNKGTF-TEPKQFSGLLETHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVL 213
                     L PE ++  +          F ++ L S          +G    +E    
Sbjct: 149 PTQDTGSVAYLRPETAQGIFTN--------FAQVKLTSRRKPPFGIAQMGKSFRNEITPG 200

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                T+ F   +   F  P E+  + +                  +    E   +   +
Sbjct: 201 NFIFRTREFEQMEMEFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWFEHPKE---K 257

Query: 274 NKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYV 312
               S R  ++ + F FG             T Y L   A   G D        G++   
Sbjct: 258 LSHYSKRTADIEYRFQFGGSEWGELEGVANRTDYDLSAHAKASGQDLSYRDQEAGENWTP 317

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R + A +  ++                 +     +AP K +++ +  + +
Sbjct: 318 YVIEPAAGVGRTMLAFMLDAYAEDEAPNAKGKLEKRVVMRLDPRLAPVKAAVLPLSRNPE 377

Query: 360 VCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 + + A L +    D  +DD G  IG ++   D +G P  V V    + D+ V +
Sbjct: 378 -LSPKAKSLAAALRQHWNID--FDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTV 433

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +E +SL+++  Y S R 
Sbjct: 434 RERDTMKQERVSLDQIEGYLSARL 457


>gi|312898875|ref|ZP_07758263.1| histidyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620037|gb|EFQ03609.1| histidyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 421

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 119/431 (27%), Gaps = 41/431 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKE 92
             +G   +LP        +   IR      G  E+  P  +S +L++       D   KE
Sbjct: 5   APRGTQDFLPEQTGDWQKLEEKIRSICRIYGFGEVRTPIFESTELFLRGIGETTDVVTKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR  ++M   P +   +   +  H          FY +   FR + RP+ G  R 
Sbjct: 65  MYTFEDRGGRSMTLRPENTASVVRAYLEHKLYGEQKVHKFYYMGPMFRHD-RPQAG--RY 121

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+F                     M     ++F  LGL  + +   S       P+    
Sbjct: 122 RQFNQFGVEEIGSQDPAVDAEIIAM---AFQLFRELGLNDLVLHLNSVGCPKCRPVYRQK 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF                        +N         +            T  +  E 
Sbjct: 179 LIEFF-------DGKRDELCDDCKSRLDKNPLRVLDCKEDGERMLSEGVPLITDYLCEEC 231

Query: 267 LFDSLPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     ++  GI          G  Y         +     +      G Y     
Sbjct: 232 AEHFEKVQSYLTGIGISFEKDPRLVRGLDYYTKTAFEIMYAPLGAQSTVCGGGRYDGLIE 291

Query: 323 RV-------VAAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +       +   +           +G++ P         ++ +       R     +  
Sbjct: 292 EIGGPSVPGIGFAVGMERLLLTLKEQGLL-PPVEELRPAYIVALG---DEARKEAFILQQ 347

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L         D  G  +  Q   A+ +     VI+G   ++  + +I++  T  +E ++
Sbjct: 348 ALRAKSLYAEIDTNGRSMKGQMKAANKINADFTVIIGEDELAQGQAQIRNMETKEQETVA 407

Query: 431 LEEVINYASHR 441
           L +V+ Y   +
Sbjct: 408 LGDVVEYIESK 418


>gi|262305779|gb|ACY45482.1| glu- + pro-tRNA synthetase [Polyxenus fasciculatus]
          Length = 136

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           S RGI+ G   + G  +S      F+  D   G   +V   S+G+   R +  ++    D
Sbjct: 15  SGRGIQGGTSHHLGQNFSKMFEIVFEDPDNPGGDKKFVFQNSWGLT-TRTIGVMVMVHAD 73

Query: 335 GKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
             G++ P  VA  ++ ++         ++  +     CE +  +L   G  V  D     
Sbjct: 74  NTGLVLPPRVACIQVVIVPCGITASLPESDKKTLJAKCESVELQLKAAGVRVKGDFRDNY 133

Query: 387 QIG 389
             G
Sbjct: 134 SPG 136


>gi|168038680|ref|XP_001771828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676959|gb|EDQ63436.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 451

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 93/306 (30%), Gaps = 23/306 (7%)

Query: 10  ILQENPRDAEIASH-KLMLRTGMIHQHSKGI-------YSWLPLGQKALDNVNAIIREEQ 61
            L+E   +A + +H  L+ + G++ +   G        Y     G      +        
Sbjct: 121 TLRE---EAGLFNHVDLVNKLGIV-ELEAGTDVAGGRGYFLKQYGVMLNQALINFGLSFL 176

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P     ++  E  +   + +E+ ++    D       T E+ +  + R  
Sbjct: 177 IKRGYTLLQTPFFMRQEVMAECAQLAQFDEELYKVTGEGD-DKYLIATAEQPLCALHRGS 235

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNK 176
               + LP  +      FR E     R   G+ R  +F   + +       + S   + +
Sbjct: 236 WMDPKQLPIKYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNDDESWKMHEE 295

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPI 232
           M  +    + +LGL    +   SG +    +     E    A     ++    +  DF  
Sbjct: 296 MLKNSEDFYQQLGLPYRVVSIVSGALNDSAAKKYDLEAWFPASKTFRELVSCSNCTDFQS 355

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +    +      + +        +  +                   R  EV   F  GT
Sbjct: 356 RNLEIRYGQKKMNDQVKNYCHLLNSTLTATERTLCCILENYQTPEGLRVPEVLQPFMLGT 415

Query: 293 KYSLPM 298
            + LP 
Sbjct: 416 DF-LPF 420


>gi|134277363|ref|ZP_01764078.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134251013|gb|EBA51092.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 446

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 135/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYLGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +              +    + L D    
Sbjct: 182 AHRVELIKYLEQHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRA 241

Query: 274 NKRVSARGIEVGH-IFYFGTK-------YSLPMSATFKGADGKD---------------- 309
           +     R ++  +  F    +       Y+L +        G                  
Sbjct: 242 HFDGLQRLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E             + P +  + +  +   D   R+  
Sbjct: 302 GGKPTAACGWAMGVERILELLKEEH-----------LVPEQEGVDVYVVHQGD-AAREQA 349

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
             +  RL   G DV      +  G+ F      AD  G    VI G   V++  V +K  
Sbjct: 350 FIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVANGTVSVKPL 409

Query: 421 RLTG------IREDMSLEEVINYASH 440
           R TG      +++ + +E +  +  +
Sbjct: 410 RGTGAEGEKNVQQSVPVESLTEFLIN 435


>gi|28378623|ref|NP_785515.1| histidyl-tRNA synthetase [Lactobacillus plantarum WCFS1]
 gi|254556838|ref|YP_003063255.1| histidyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300768151|ref|ZP_07078056.1| histidine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180779|ref|YP_003924907.1| histidyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32130098|sp|Q88VQ7|SYH_LACPL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|28271459|emb|CAD64364.1| histidine--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|254045765|gb|ACT62558.1| histidyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300494215|gb|EFK29378.1| histidine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046270|gb|ADN98813.1| histidyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 426

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 138/442 (31%), Gaps = 44/442 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V A  R         E+  P  ++ +++  S     D 
Sbjct: 1   MRYQRPKGTADILPGDSEKWQYVEATARAVFKTYQFKEIRTPMFENFEVFSRSAGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F  +      +  P+  Y +   FR E RP+
Sbjct: 61  VTKEMYDFHDKGDRHITLRPEGTAGVVRAFVENKLYGPQVLKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF      +F             M      +    GL  + +   +       
Sbjct: 120 SG--RLREFHQLGVEAFGSESAALDVEVIAMG---YNLLKTFGLTDLKLVINTLGDQQTR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS +          +V  SK   D    ++     D +S  + 
Sbjct: 175 DDYRQALIDYLEPHFDELSDDSKERLHKNPLRVLDSKAPEDQQFVADAPSILDYLSPEAQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVG-HIFYFGTKY-SLPMSATFKG- 304
                      +     ++  ++          I E+  H    G  Y ++     + G 
Sbjct: 235 AHFDQTKTYLDALAIPYEIDATMVRGLDYYNHTIFEIMTHSKALGKGYTTICAGGRYNGL 294

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G      +G +G+G  R++        D + I  P      ++ +  +   D    
Sbjct: 295 VKELGGPEVSGVG-FGLGVERLL-----VLMDAENIAVPTD---DQLDVYVVGIGD-TAS 344

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               K+   L   G     D +  +  +QF  AD L     + VG   ++D  V +K   
Sbjct: 345 ATTLKLVQALRAAGYKAERDYLDRKPKAQFKSADRLNARYTMTVGETELADQVVNLKAMA 404

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           TG    +++ ++   A      
Sbjct: 405 TGEETKVAMADIYQDAHQVLDK 426


>gi|323700066|ref|ZP_08111978.1| seryl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323459998|gb|EGB15863.1| seryl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 425

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 14/226 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  G  A     +  ++ + Q  R G  E+  P + +      +G+   + +++
Sbjct: 158 AGARFSISFGWCARLERALAQLMLDTQTERHGYTEVLPPFMVNRKTMTGTGQLPKFEEDL 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +L D  ++     PT E  +T+I+   +     LP  F      FR E     +   G+
Sbjct: 218 FKLTD--EREFYLIPTAEVPLTNIYADEVIPEEKLPVKFCAQTPCFRSEAGSYGKDTKGL 275

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +  +F   P+ S  +  +M  S  RI   LGL    +   +G +G   +  
Sbjct: 276 IRQHQFYKVEMVNF-AHPDHSYEALEEMTHSAERILEILGLHYRTIVLCTGDMGFSAAKT 334

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              E  +       ++    +  DF     N  F    S   +   
Sbjct: 335 YDIEVWLPGQGKYREISSCSNCEDFQARRANIRFQPKDSKKKLYPH 380


>gi|291085038|ref|ZP_06570910.1| histidine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291071731|gb|EFE09840.1| histidine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 414

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 138/441 (31%), Gaps = 71/441 (16%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   YLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N  ++   P            H   Y       + I   FR E RP+ G  R R+F    
Sbjct: 64  NGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--RYRQFHQLG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS------------ 207
              F L           + +   R +  LG+    +  E   IG   +            
Sbjct: 120 VEVFGLQGPDIDAE---LIMLTARWWRALGISQ-HVSLELNSIGSLEARASYRDALVAYL 175

Query: 208 --HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             H+  +  D            +D   P      +D   L   ++  +  + A      E
Sbjct: 176 EQHKDKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPQLGDYLDDDSREHFAGLCKLLE 235

Query: 266 KLFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKDHYVQM 314
               +     +   RG++     +F       G++ ++     + G      G+      
Sbjct: 236 SAGIAY-TVNQRLVRGLDYYNRTVFEWVTSSLGSQGTVCAGGRYDGLVEQLGGRATPAV- 293

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             + +G  R+V  V   +        P+ +A   +  I + A     + A  ++  RL  
Sbjct: 294 -GFAMGLERLVLLVQAVN--------PEFIA-SPVVDIYLVASGTDTQSAAMRLAERL-- 341

Query: 375 VGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                      E  G +             FA AD  G  + +++G   V++  V +K  
Sbjct: 342 ---------RDEVPGVKLMTNHGGGNFKKQFARADKWGARVALVLGESEVANGTVVVKDL 392

Query: 422 LTGIREDMSLEEVINYASHRF 442
            +G +  ++ + V  +     
Sbjct: 393 RSGEQTAVAQDSVAAHLRTLL 413


>gi|282555136|gb|ADA82660.1| ProS [Candidatus Blochmannia nearcticus]
          Length = 64

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P +    SH+LMLR G+I Q S GIYSWLP G + L  +  IIREE
Sbjct: 1  MRVSQYLLATLKEIPSNCTAISHRLMLRAGLIRQVSSGIYSWLPTGXRVLRKIKNIIREE 60

Query: 61 Q 61
           
Sbjct: 61 M 61


>gi|291570922|dbj|BAI93194.1| histidyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 425

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 129/428 (30%), Gaps = 55/428 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G    LP        V ++  E   R    E+  P  +   L+    G   D  GKEM  
Sbjct: 9   GTRDILPEEVGYWQWVASVAEETLARGNYQEIRTPIFEPTALFERGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D+++   P     +   +              + +   FR E RP+ G  R R+F
Sbjct: 69  FCDRGDRSITLRPEGTAGVVRAYIERKLHANPGVQRLWYMGPMFRYE-RPQAG--RQRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------------- 199
                         +      + V    I   LG+ ++ +   S                
Sbjct: 126 HQLGVEVLGSDDPRADVEVIAVAV---DILKSLGITNLHLNLNSVGDRTDRQNYRQALVD 182

Query: 200 --GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
              P  G+L  +          ++  SKD     I        D +   S        Y 
Sbjct: 183 YLTPFSGELDQDSRDRLTRNPMRILDSKDERTQEITRNAPSILDYLGERSQSHFERVQYL 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG---ADG 307
                   K             RG++              G + ++     + G     G
Sbjct: 243 I-------KELGISYTLNPRLVRGLDYYTHTAFEIISDDLGAQATVCGGGRYDGLVQELG 295

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +G + IG  R++  +++  H       P  V P ++ L+   +  +        
Sbjct: 296 GPSVPAVG-WAIGLERLII-LLQQLHQ------PPQVTP-QLYLV---SRGEKAEANGLI 343

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L + G  V  D  G     QF  AD  G    +++G        V +K   +G + 
Sbjct: 344 LAQKLRQAGLRVELDLSGSAFSKQFKRADRSGAGACLVLGDAEAIAGTVNLKWLKSGEQT 403

Query: 428 DMSLEEVI 435
            ++  ++I
Sbjct: 404 VLNQVDLI 411


>gi|227504561|ref|ZP_03934610.1| glycyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198881|gb|EEI78929.1| glycyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 459

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/464 (15%), Positives = 152/464 (32%), Gaps = 70/464 (15%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVE 82
           L+ + G I+  S+  + + PLG +  +N+         ++    + +    +Q   +WV 
Sbjct: 17  LVYQAGEIYGGSRSAWDYGPLGVELKENIKRQWWRHMVQSREDVVGVDTSVIQPRQVWVS 76

Query: 83  SGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           SG  + +     E      R     +     E+   +                       
Sbjct: 77  SGHVEVFTDPLVESRHTGKRYRADHLLEAYEEKHGHEPANGLADINDPETGQPGDWT--- 133

Query: 140 RDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
             E +   G++++    + D      L PE ++  +             +  K++   A 
Sbjct: 134 --EPKAFSGLLKTFLGPVDDEQGLHYLRPETAQGIF-------------VNFKNVMTSAR 178

Query: 199 SGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             P      IG    +E         T+ F   +   F  P E+  +      +      
Sbjct: 179 MKPPFGIANIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEQWHQYWIDDRYNWYV 238

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMS 299
                  +    E   +   +    S R ++V + F F              T Y L + 
Sbjct: 239 DLGIKEENLRLYEHPKE---KLSHYSKRTVDVEYAFGFTGSKWGELEGVANRTDYDLSVH 295

Query: 300 ATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------I 338
           A   G D         +     +     G  R + A +  ++D +              +
Sbjct: 296 AKGSGEDLSYYDQTTEERWVPYVIEPAAGLGRSMMAFLVDAYDEEEVPNSKGGTDKRVVL 355

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +AP K++++ +   +++      ++ A+L ++  +V +D  G  IG ++   D +
Sbjct: 356 RLDRRLAPVKVAVLPLSKKEELANP-ARELAAKL-RMNWNVDYDTSGA-IGRRYRRQDEI 412

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  V      + D  V ++ R T  +E + ++E+  Y + R 
Sbjct: 413 GTPFCVTYDFDSLEDGAVTVRERDTMEQERVKIDELEAYLAARL 456


>gi|15668403|ref|NP_247199.1| glycyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2500998|sp|Q57681|SYG_METJA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|1499005|gb|AAB98213.1| glycyl-tRNA synthetase (glyS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 577

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEK 367
             +     G  R+   ++E S+  +     +    S+AP K  ++ +   D + +   ++
Sbjct: 443 PHVIEPSYGIDRITYCLLEHSYREEEDRVYLDLKPSIAPIKAYVLPLVNKDDMPK-IAKE 501

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L + G    +DD G  IG ++  AD +G P  + V  + + D  V ++ R T  + 
Sbjct: 502 IEQMLRENGIIAEYDDSGA-IGRRYMRADEIGVPFCITVDGQTLEDRTVTVRERNTREQV 560

Query: 428 DMSLEEVINYASHRFSN 444
            + ++E+++Y   R   
Sbjct: 561 RVKIDELVDYLKERLKE 577



 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 96/309 (31%), Gaps = 76/309 (24%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESG----------- 84
            G   + PLG    +N+ +  RE+   + G  E+  PT+   ++   SG           
Sbjct: 30  AGFVDYGPLGCLLKNNIISKFREQYIIKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 89

Query: 85  --------RYDSYGKE----------------------------------------MLRL 96
                   R D   +E                                        M   
Sbjct: 90  CKNCLESFRADHLIEEFVDVDTEGKTLKELDELIRKHNIRCPKCGGELGEVKKFNLMFVT 149

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
           +      +     P   + +   FR   + +RN LPF   QI   +R+E+ PR GV+R R
Sbjct: 150 SIGPGGKRTGYMRPETAQGIFIQFRRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLR 209

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-HEFIV 212
           EF   +   F + PE  +H            F  +  + +P+      +  +LS  E ++
Sbjct: 210 EFTQAEIEYF-VHPERKEHEK----------FDLVKDEVVPLLPAERQMDENLSDDEKVI 258

Query: 213 LADTGET-QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               GE  +    +        +    F + I ++    ++          +    +D+ 
Sbjct: 259 KISIGEAVEKGIIRHQTIAYFIALTKRFLEAIGIDKDKIRFRQHLPNEMAHYAIDCWDAE 318

Query: 272 PENKRVSAR 280
              +R    
Sbjct: 319 IYTERFGWI 327


>gi|237746814|ref|ZP_04577294.1| seryl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229378165|gb|EEO28256.1| seryl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 438

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 14/219 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DR 99
              +    +   + + Q    G  E   P + +AD    +G+   +  ++        + 
Sbjct: 167 NMARLHRALAQFMLDVQTMEHGYTECYTPYMVNADSLYGTGQLPKFADDLFAAKKGGQEG 226

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            ++ +   PT E  +T+  R  I S   LP         FR E     R   G++R  +F
Sbjct: 227 ENENLYLIPTAEVTLTNTVRGEILSSGQLPIKLTAHTPCFRSEAGSYGRDTRGMIRQHQF 286

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +     + PE S  +  +M  +  R+  +LGL    +   +G +G   +     E  
Sbjct: 287 DKVEMVQI-VHPEKSYEALEEMVKNAGRVLEKLGLPYRVVSLSTGDMGFSAAKTYDLEVW 345

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           + A     ++    +   F        F +      +V 
Sbjct: 346 LPAQNTYREISSVSNCEAFQARRMQARFRNEKGRPELVH 384


>gi|168494122|ref|ZP_02718265.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183575890|gb|EDT96418.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 429

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 140/446 (31%), Gaps = 61/446 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKEAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +             RG++     IF F     G   ++     
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 302 FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           + G     G       G +G+G  R++  +     + +G+  P   A   + +  +    
Sbjct: 288 YDGLVSYFGGPETAGFG-FGLGVERLLLIL-----EKQGVTLPIENA-LDVYIAVLG--- 337

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +
Sbjct: 338 EGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSADVFVAKTLITLGESEVESGQVTV 397

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K+  T     +SLE +    S  F  
Sbjct: 398 KNNQTREEVQVSLETISQNFSEIFEK 423


>gi|87300561|ref|ZP_01083403.1| histidyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87284432|gb|EAQ76384.1| histidyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 450

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 124/411 (30%), Gaps = 34/411 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP       +V A+ R +  R G  E+  P L+  +L+    G   D  GKEM  
Sbjct: 32  GMVDLLPEQMPLWQHVEALARSQFRRAGLREIRTPLLEVTELFARGIGEATDVVGKEMYT 91

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      H       P   +     FR E RP+ G  R R+F
Sbjct: 92  FLDRGERSCTLRPEGTASVVRAALQHGLL-SQGPQRLWYTGPMFRYE-RPQAG--RQRQF 147

Query: 156 LMK--DAYSFDLTPEGSKHSYNKMFVSYLRI--------FHRLGLKSIPMRAESGPIGGD 205
                +   F   P     +    +     +         + LG  +      +  +   
Sbjct: 148 HQAGIECLGF-ADPRSDAEAIAIAWDLLSELGVGGLALELNSLGDPADRAAYRTALVAWL 206

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                ++ A++ E         +D           +   L   +   +           E
Sbjct: 207 EERRELLDAESRERITTNPLRILDSKNAETQAVLAEAPLLIDSLSDPSRERFEAVRRCLE 266

Query: 266 KLFDSLPENKR-------VSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGS 316
            L      N R        +    E+      G + ++     + G              
Sbjct: 267 ALEIPYQLNPRLVRGLDYYTHTAFEI-TSSQLGAQATVCGGGRYDGLIEQLGGAPTAAIG 325

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + IG  R+V  ++ +  D      P       +  + + +  +        +  +L + G
Sbjct: 326 WAIGLERLV--LLCAQRDAAEGALPT----VPVPDVYVVSRGEAAERQALVLSRQLRQAG 379

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIR 426
             V  D  G   G Q   AD  G P  V++G        V +K+ R +   
Sbjct: 380 QMVELDLTGSAFGKQLKRADRSGAPWAVVIGEGEAEQGVVLLKNLRRSADS 430


>gi|83858681|ref|ZP_00952203.1| seryl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83853504|gb|EAP91356.1| seryl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 424

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + + Q    G  E SVP +   +    +G+   + +++ R  D         PT
Sbjct: 175 RALGQFMLDLQTTEHGYRETSVPYMVRDEALFGTGQLPKFAEDLFRTTD----DRWLIPT 230

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I +  + P     +   FR E     R   G++R  +FL  +  S   
Sbjct: 231 AEVPLTNLVRDSIHAEDSFPIRMTALTPCFRSEAGSAGRDTRGLIRMHQFLKVELVSI-T 289

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQV 221
           TPE S+    +M      +  RL L    M+  +G +G         E  + +     ++
Sbjct: 290 TPEQSEDELERMTQCAEEVLRRLELPYRVMKLCTGDMGFSARRTYDLEVWMPSQNTYREI 349

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 350 SSCSTCGDFQARRMNARY 367


>gi|157413737|ref|YP_001484603.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166987315|sp|A8G5Y6|SYS_PROM2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157388312|gb|ABV51017.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 425

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 75/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGARLERALINFMLDMHTKNGYLELMPPALVNSESLKGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ +   + LP  +      FR E     +   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNELIDPKQLPIKYVAYSPCFRREAGSYGKDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ K+      IF +L L    +   +G +G   S     E  + +  
Sbjct: 289 YWF-CDPTKSLEAHKKITSDAENIFKKLNLPYRIVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|124485242|ref|YP_001029858.1| histidyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|166228580|sp|A2SQI5|SYH_METLZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|124362783|gb|ABN06591.1| histidyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 410

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/425 (15%), Positives = 129/425 (30%), Gaps = 37/425 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  +G   +LP        V   +R      G  E+  P  +  +L+  +SG  +  
Sbjct: 1   MIQK-PRGTRDFLPAEMAQRRFVEQKMRAVAATFGYGEIVTPMFEELELFTIKSG--EGI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             EM    D+  + +   P     +   + +  +     P  ++     FR E RP+ G 
Sbjct: 58  INEMYAFEDKGGRKITLRPEITAAVLRAYVNEAQM-APKPLRWFYFAECFRYE-RPQKG- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F    +         +      +      +    G++ +       P+     H 
Sbjct: 115 -RYRQFWQFGSELIGADSAAADAE---VISLAYELLRCTGVRFVMKVGHLAPMK----HL 166

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              L    + QV  + D  D  +        D  S +          A T         D
Sbjct: 167 LSGLDAPSQKQVMAALDKRDMDLLGTTLASLD--SSDLFEPLKGLVTAKTLPEIFAVTGD 224

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-------ADGKDHYVQMGSYGIGAM 322
              + +     G        F   + +     +         AD      Q+   G+   
Sbjct: 225 IPEKARIEETFGYLEAQNIPFEQNFGIARGLDYYTGMVFEGFADNLGAENQILGGGVY-- 282

Query: 323 RVVAAVIESS---------HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +A +                + ++    + P  I ++ +    +    A     + L 
Sbjct: 283 -RLAHLFGGKDVPSCGFGIGFDRVLVSLGEITPQTIPVVAVICTPETRIPAYNA-ASALR 340

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D +    G+Q + A   G    V++G K  +   + +K   T ++ +MS++ 
Sbjct: 341 SAGITAVMDLLDRGFGAQLSSALKSGASFAVVIGEKEAAAGMITLKDLATAVQTEMSIDN 400

Query: 434 VINYA 438
            I   
Sbjct: 401 AIEVI 405


>gi|86607115|ref|YP_475878.1| histidyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123724539|sp|Q2JRX6|SYH_SYNJA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|86555657|gb|ABD00615.1| histidyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 419

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 137/436 (31%), Gaps = 45/436 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDS 88
           MI Q  +G    LP   +    V A  RE   R    E+  P L+  +L+  S G   D 
Sbjct: 3   MI-QAVRGTRDILPQEVRLWQQVEASAREILGRANYQEIRTPILELTELFARSIGSATDV 61

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            GKEM   + R ++ +   P +   +   +  H           +     FR E RP+ G
Sbjct: 62  VGKEMYSFSTRGEQEVSLRPENTAGVVRAYIQHGLQVAGDVQRLWYCGPMFRYE-RPQAG 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F              +      +      +   +G +++ +R  S     D   
Sbjct: 121 --RQRQFHQLGVELLGSRDPRADAE---VIALAWDLLRAVGAENLTLRLNSLGDPQDRRA 175

Query: 209 EFIVLAD------------------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               L D                      ++  SKD     I  +     D +S +S   
Sbjct: 176 YRQALVDYLTPLKEELDLDSQERLVRNPLRILDSKDPHTRTIAEQGPKLPDYLSADS-RA 234

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKG---A 305
            +    A    +      D          +    E+      G++ ++     + G    
Sbjct: 235 FFEQVQAHLQALDIPYELDPYLVRGLDYYTHTAFEIVSPE-LGSQSTVCGGGRYDGLVEE 293

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + IG  R+V  ++              + P  + +  I           
Sbjct: 294 LGGPPTPAVG-WAIGLERLV--LLLQKKQQ-------EIPPTSVEVYVISRG-AKAEAQS 342

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +I   L + G     D  G     QF  A   G    V +G    +  +V++KH  TG 
Sbjct: 343 LQIAQALRQAGFCTELDLSGSAFSKQFKRASRSGATWAVALGDAEAAAGEVQLKHLPTGQ 402

Query: 426 REDMSLEEVINYASHR 441
           ++ +   +++ Y   +
Sbjct: 403 QQTLLQADLVKYLVSQ 418


>gi|300920669|ref|ZP_07137080.1| histidyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300412350|gb|EFJ95660.1| histidyl-tRNA synthetase [Escherichia coli MS 115-1]
          Length = 424

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 138/446 (30%), Gaps = 65/446 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVS----YLRIFHRLGLK-SIPMRAESGPIGGDL 206
            R+F       F L           M  +     L IF  + L+ +     E+     D 
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAELI-MLTARWWRALGIFEHVTLELNSIGSLEARANYRDA 180

Query: 207 SHEFIVLADTGETQVFCSKDFM------DFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
              F+        +    + +       D   P      +D  +L   +++ +  + A  
Sbjct: 181 LVTFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGL 240

Query: 261 DVHNEKLFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKD 309
               E    +     +   RG++     +F       G++ ++     + G      G+ 
Sbjct: 241 CKLLESAGIAY-TVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRA 299

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R+V  V   +                +  I + A     + A   + 
Sbjct: 300 TPAV--GFAMGLERLVLLVQAVN---------PEFKADPVVDIYLVASGADTQSAAMALA 348

Query: 370 ARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKV 416
            RL             E  G +             FA AD  G  + V++G   V++   
Sbjct: 349 ERL-----------RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTA 397

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            +K   +G +  ++ + V  +     
Sbjct: 398 VVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|56751844|ref|YP_172545.1| histidyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|81676835|sp|Q5N0Z5|SYH_SYNP6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56686803|dbj|BAD80025.1| histidyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 435

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 138/450 (30%), Gaps = 62/450 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G    LP   +    +    RE   R    E+  P  +   L+    G   D  GK
Sbjct: 5   QALRGTRDILPPETQVWQWIEQTAREILGRAAVQEVRTPIFEQTALFERGIGEATDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR D+++   P         +  H  + +            FR E RP+ G  R
Sbjct: 65  EMYSFRDRGDRSLTLRPEGTAGTVRAYIEHGLASQGGVQRLRYTGPMFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +            +I   LGLK++  R +   +G        
Sbjct: 122 QRQFHQLGLELLGTADARADAE---AIALATQILQALGLKNL--RLDLNSVGD------- 169

Query: 212 VLADTGETQVFCSKDFMDFPIP---SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                   +    +  +D+  P     + D  D +  N +    +      + V      
Sbjct: 170 -----ACDRAAYRQALVDYLTPYAADLDPDSRDRLERNPLRILDSKDERTQAIVAEAPSL 224

Query: 269 -DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV-VA 326
            D L E  R     ++   + + G  Y L      +G D    Y    ++ I +  +   
Sbjct: 225 HDYLSERSRQLFEQVQ-QLLTHLGIDYRLEPKL-VRGLD----YYTHTAFEIISSDLGAQ 278

Query: 327 AVIESSHDGKGII------------WPD-------------SVAPFKISLINIKAHDQVC 361
           A +       G++            W               +V P  +    +     + 
Sbjct: 279 ATVCGGGRYDGLVSQLGGPETPAVGWAMGLERLVLLLQQGQAVPPATLDFYLVSRG-AIA 337

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 +  +L   G  V  D  G   G QF  AD  G    +++G       +V +K  
Sbjct: 338 EGQALILAQKLRSAGFGVELDLSGSAFGKQFKRADRSGAIACLVLGDAEAEQGQVNLKWL 397

Query: 422 LTGIREDMSLEEVI---NYASHRFSNNRPV 448
            +G ++ +   E++   ++   R    R V
Sbjct: 398 QSGEQQTLDQSELLQDSDHWRSRLQAARTV 427


>gi|320530172|ref|ZP_08031242.1| histidyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320137605|gb|EFW29517.1| histidyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 421

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 123/437 (28%), Gaps = 41/437 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ +  +G    LP    A  +V  +IR   +R G  E+  P  +  +L+        D 
Sbjct: 1   MLTKAPRGTKDILPGEVGAWTHVERVIRGLCDRYGYKEIRTPHFEHTELFQRGIGDGTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRF 147
             KEM    DR D+++   P +       +  H K Y +      + I   FR + RP+ 
Sbjct: 61  VDKEMYTFTDRGDRSLTLRPENTAAAIRAYLEH-KFYADGGLQKLFYIGSMFRYD-RPQA 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R REF      +              + + +L                 G      +
Sbjct: 119 G--RMREFHQFGVEAVGEESPAVDAEIILLALDFLE--ELGLTGLTLKLNAVGCPQCRPA 174

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +   + A   E      +D  D    S     D                           
Sbjct: 175 YRERLQAYFKEYLGELCEDCRDRYTRSPLRILDCKADAAQPFMAGAPAITDCLCAECAAH 234

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATF--KGAD----------------- 306
           FD++      +     +      G  Y         +   GA                  
Sbjct: 235 FDAVQSYLTAAGVSYTLDTRLVRGLDYYTRTAFEIAYPPLGAQSAVAGGGRYDGLVEELG 294

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G         +  G  RV+ A+ +        + P+      + +I + A          
Sbjct: 295 GSPTPAV--GFAAGIERVLLALTQQH------LLPEEPPAADVFIIALGAAAGAAA---F 343

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L + G     D  G  + +Q   A+  G    VI+G   +      ++      +
Sbjct: 344 PLLHDLRRGGVRALMDYAGRSMKAQMKQANKAGAHYAVILGEDELRSGTAALRDMTESTQ 403

Query: 427 EDMSLEEVINYASHRFS 443
           E + L +++        
Sbjct: 404 EMIPLADMVQRLISEVK 420


>gi|298245683|ref|ZP_06969489.1| glycyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297553164|gb|EFH87029.1| glycyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 450

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/484 (14%), Positives = 148/484 (30%), Gaps = 121/484 (25%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIR--EEQNRTGAIEMSVPTLQS 76
           L  R G ++ +S       G Y + PLG +  +N+         Q     + +    +  
Sbjct: 19  LSKRRGFVYPNSEIYGGVAGFYDFGPLGVELRNNIRRFWWWSMVQMHDNVVGIEGANITH 78

Query: 77  ADLWVESGRYDSYGKEM---------LR-------------------------------- 95
             +W  SG  +++   +          R                                
Sbjct: 79  PRVWEASGHVENFVDILVDCKKCKRRFRIDHLDPKNVEQNKCPACGGEFTEPRRFNLLME 138

Query: 96  ----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
               + + +           + +   + + +KS R  +PF   QI   FR+E+ P   + 
Sbjct: 139 TYLGVVEGDRMKTYLRGEACQNIYLDYDNVVKSSRVQIPFGICQIGKAFRNEVTPGNFLF 198

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REF   D   F + P      ++     Y + +                         
Sbjct: 199 RQREFEQWDLQ-FFVHPSEMDKWFD-----YWKEYRF----------------------- 229

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                     +   KD + F    ++           I  +    +     +H  + +D 
Sbjct: 230 -----KWYQTIINHKDRLRFHEHGKDELAHYAKKAYDIEYRTILGWQEWEGIHWRQDWDL 284

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVI 329
                          H  Y G   S      +   + K+ Y   +     G  R    ++
Sbjct: 285 SR-------------HSQYSGQDLS------YTDLNTKERYIPWIVETSGGVDRTFLNLL 325

Query: 330 ESSHD------GKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
             +++      GKG     +     +AP K +++ ++ + +      + I+  L +    
Sbjct: 326 LDAYEEQPDPMGKGNDRTVLHLHPWLAPVKCAVLPLQKNKEELVGVAKDIHKNLQRFMV- 384

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD+ + IG ++   D +G P  V +  + + D  V ++ R +  +  + + E+  Y 
Sbjct: 385 TQYDDI-QNIGRRYRRQDEIGTPYCVTIDFQTLDDQTVTLRERDSMEQIRIPISELTMYL 443

Query: 439 SHRF 442
             R 
Sbjct: 444 LDRV 447


>gi|326390137|ref|ZP_08211698.1| histidyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993785|gb|EGD52216.1| histidyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 418

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 134/439 (30%), Gaps = 51/439 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ +  +G    LP        +  +IRE  +  G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDILPSESYKWQYIEGLIREICDVYGFKEIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++             F  H       P   Y I   +R E RP+ G
Sbjct: 61  VRKEMYTFTDKGGRSITLKAEGTSPAVRAFIEHNLYAETQPTKLYYITPVYRYE-RPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKM-------------------------FVSYLR 183
             R RE        F      +      +                           +Y +
Sbjct: 120 --RLREHHQFGVEIFGAKSASADAEVISVAMTLLKKLGLNNLELRINSIGCPVCRKNYNK 177

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDI 242
           +       ++    +       + +E   L         C +   D P I     D    
Sbjct: 178 VLKDFLRDNLEYLCDD----CKVRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKS 233

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                        Y    D    +  D        + ++ I        G +Y       
Sbjct: 234 HFEELQKYLDIMGYDYIIDPRIVRGLDYYTKTAFEIISKDIGAQGTVCGGGRYD-----G 288

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G      +G +G+G  R++  +     +  GI  P    P  + L  I    +  
Sbjct: 289 LIEECGGPSMPGVG-FGMGLERLLITL-----EQNGIEIPK---PEGVDLF-IAYVGEEA 338

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +     +  +L   G  V  D+M   + +Q   A+ L     +++G + + ++KV++K  
Sbjct: 339 KLFTFALANKLRFNGLKVERDNMDRSLKAQMKYANKLNAKFAIVIGEEEMKENKVKLKDM 398

Query: 422 LTGIREDMSLEEVINYASH 440
             G   ++S++E+     +
Sbjct: 399 RVGSEVEISIDEIEQRIKN 417


>gi|315103267|gb|EFT75243.1| glycyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
          Length = 506

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 123/398 (30%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 166 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 219

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 220 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVE-------------- 265

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                P   +  H++ + A T             +     N D 
Sbjct: 266 ---------------------PGTDEEWHQYWIDARTA-----------WYTNLGINPDN 293

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 294 LRHYEHPKEKLSHYSKRTVDVEYKFGFTGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 351

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 352 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 408

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 409 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 465

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V ++ R T  ++ +S+++V  Y   R 
Sbjct: 466 TVDFDSLEDDAVTVRERDTMAQQRVSIDKVEEYLGGRL 503


>gi|332198542|gb|EGJ12625.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
          Length = 429

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 140/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +          M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPAIDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 RQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|134297896|ref|YP_001111392.1| seryl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|172044203|sp|A4J0G4|SYS_DESRM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|134050596|gb|ABO48567.1| seryl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 424

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  +G +    +   + +      G  E+  P + + D  + +G+   + ++M +L   
Sbjct: 164 FYKGMGARLERALINFMLDLHTREHGYTEIFPPFIVNGDSMLGTGQLPKFAEDMFKLEGL 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           N       PT E  +T+++R  I +   LP         FR E     R   G++R  +F
Sbjct: 224 N---YYLIPTAEVPVTNLYRDEILAEEQLPIYHCAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +   F   PE S     ++  +  +I   LGL    +   +G +G
Sbjct: 281 NKVELVKFS-KPEESFDELERLTANAEKILQALGLPYRVVLLSTGDMG 327


>gi|296104193|ref|YP_003614339.1| histidyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058652|gb|ADF63390.1| histidyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 424

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 136/429 (31%), Gaps = 31/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFNQLGVEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVSLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D      +     + S N  +        A    + +E     
Sbjct: 178 RDALVAFLEEHKEKLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPALGDYLDDESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM-- 322
               K + A GI          G  Y          T  G+ G       G Y       
Sbjct: 238 AGLCKLLEAAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGT--VCAGGRYDGLVEQL 295

Query: 323 --RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVG 376
             R   AV  +    + ++   +V P      +  I + A     + A  ++  R+    
Sbjct: 296 GGRAAPAVGFAMGLERLVLLVQAVNPEFKADSVVDIYLVASGAETQSAAMQLAERVRDAL 355

Query: 377 CDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +V         G    QFA AD  G  + +++G   V++ +V +K   +G +  ++ + 
Sbjct: 356 PEVKLM-TNHGGGNFKKQFARADKWGASIALVLGESEVANGEVVVKDLRSGEQTTVTQDG 414

Query: 434 VINYASHRF 442
           V  +     
Sbjct: 415 VAAHLRTLL 423


>gi|116328846|ref|YP_798566.1| glycyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331755|ref|YP_801473.1| glycyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280506|sp|Q04QV5|SYG_LEPBJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|122283369|sp|Q04Z62|SYG_LEPBL RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|116121590|gb|ABJ79633.1| Glycine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125444|gb|ABJ76715.1| Glycine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 464

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 147/436 (33%), Gaps = 46/436 (10%)

Query: 42  WLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
           + P G + L N+  +  +     R   + +    L +  +W  SG   ++      L D 
Sbjct: 40  YGPYGVELLQNLKQLWWKFFVHLREDVVGLDSSILLNPKVWEASGHVSNFTD---PLIDC 96

Query: 100 NDKAMIYGP--THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
            +           E+   + F + +   + +     +      +    R     +R+F +
Sbjct: 97  KNCKTRIRADKFLEDQKGEGFATGLTLEK-MNQVIKENNFSCPNCG-QRGTFTEARDFNL 154

Query: 158 KDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               S   + E S   Y +      +F+++  +          +      IG    +E +
Sbjct: 155 MFKTSHGASAEDSLDIYLRPETAQGIFLNFKNVVST---TRRKIPFGIAQIGKSFRNEIM 211

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T+ F   +   F  P    ++        +            ++   +     
Sbjct: 212 ARQFVFRTREFEQMEMEFFCEPGTQKEWFSHWVNYCMNWLTEQVGVKKENLRIREHEKEE 271

Query: 272 PENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD--------GKDHYVQMG 315
                     IE  + F +G        T Y L     F G D         K +   + 
Sbjct: 272 LSFYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFSGEDLKYQDQVQNKKYVPFVV 331

Query: 316 SYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACE 366
              +G  R+  AV+  ++  + +          +   +AP K+++  +   D    +   
Sbjct: 332 EPALGVNRLFLAVVTDAYQEEKLPDGEIRTVLRFSPKIAPVKVAVFPLMKKD-GLLEKSR 390

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I+A LSK+G ++ +DD G  IG ++   D +G P  + V    + D  V ++ R +  +
Sbjct: 391 EIFADLSKLG-NIEYDDSGA-IGKRYRRQDEIGTPFCITVDYDTLKDDTVTVRERDSMAQ 448

Query: 427 EDMSLEEVINYASHRF 442
           E +S+  + N+   R 
Sbjct: 449 ERVSVTRLRNWLFERL 464


>gi|332184963|ref|ZP_08386712.1| seryl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332014687|gb|EGI56743.1| seryl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 425

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 23/243 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           R+ ++ +  L    GM         G    L  G  A     +   + +    + G   +
Sbjct: 139 REHDVIAPAL----GMDFDTGVALSGARFTLLRGAMARLSRALGQFMLDRMTEQHGFELV 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L   +    +G+   + +++ R  D         PT E  +T+I R  I S + LP
Sbjct: 195 QPPLLVRDEAAFGTGQLPKFAEDLFRTTD----GRWLIPTAEVSLTNIVREAILSEQELP 250

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             F  +   FR E     R   G++R  +F   +  S   TPE S   + +M  +   + 
Sbjct: 251 LRFTALTPCFRSEAGAAGRDTRGLIRQHQFDKVEMVSI-TTPEQSDAEHERMTAAAEGVL 309

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             LGL    M   +G +G   +     E  +       ++       DF        +  
Sbjct: 310 EALGLPYRRMLLCTGDMGFSAARTFDLEVWLPGQARYREISSCSTCTDFQARRMMARYRP 369

Query: 242 IIS 244
              
Sbjct: 370 TEG 372


>gi|319406057|emb|CBI79687.1| Seryl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 425

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 87/305 (28%), Gaps = 72/305 (23%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   +  G  E+SVP L  +++   + +   + +++ +  D          T
Sbjct: 176 RALGQFMLDMHVDEHGYQEISVPFLVRSEIVYGAAQLPKFSEDLFQTTD----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  + ++  S I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLVNLVNSEILDITELPLRFTSLTPCFRSEAGAAGRDTRGMLRQHQFRKVELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E S     +M      +  RLGL    +   +G +G                      
Sbjct: 291 TEEQSLDELERMTECAENVLKRLGLPFRTVVLSTGDMG---------------------- 328

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                                 I                    D                
Sbjct: 329 --------------FTARKTYDIEVWLPGQECYREISSCSVCGDFQGRR----------- 363

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQ--MGSYGIGAMRVVAAVIESSHDGKG-IIWPD 342
                       M+A ++  D K  +    +   G    R + A++E+     G II PD
Sbjct: 364 ------------MNARYRLEDKKTLHFVHSLNGSGTAIGRCLIAILENYQQADGSIIIPD 411

Query: 343 SVAPF 347
            + P+
Sbjct: 412 VLQPY 416


>gi|54023426|ref|YP_117668.1| glycyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|59798496|sp|Q5YZT7|SYG_NOCFA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|54014934|dbj|BAD56304.1| putative glycyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 466

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 122/362 (33%), Gaps = 67/362 (18%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + D      +   T + +  +       + +  PF   QI   FR+E+ P   + R+RE
Sbjct: 155 PVDDEEGLHYLRPETAQGIFINYKNVETTARKKPPFGIAQIGKSFRNEITPGNFIFRTRE 214

Query: 155 FLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           F   +   F    E  + H Y     + L  +  LG+    +R    P    LSH     
Sbjct: 215 FEQMEMEFFVKPGEDEQWHQYW--IDTRLAWYTDLGIDPENLRLYEHP-KEKLSHYSTRT 271

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D      F   ++ +    +  TD+D                                 
Sbjct: 272 VDIEYRFRFQGSEWGELEGVANRTDYDLKT------------------------------ 301

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                       H  + GT+ S      F  A+ + +   +     G  R + A +  ++
Sbjct: 302 ------------HSEHSGTELS-----YFDQANNERYIPYVIEPAAGLTRSLMAFLVDAY 344

Query: 334 DGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                            +     +AP K +++ + + +       + + A+L K   +V 
Sbjct: 345 AEDEAPNAKGGVDVRTVLRLDRRLAPVKAAVLPL-SRNADLTPKAKDLAAQLRKHW-NVE 402

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +DD G  IG ++   D +G P  + V    + D  V I+ R +  +E ++L++V  Y + 
Sbjct: 403 FDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRERDSMAQERIALDKVEGYLAQ 461

Query: 441 RF 442
             
Sbjct: 462 HL 463


>gi|238060528|ref|ZP_04605237.1| glycyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237882339|gb|EEP71167.1| glycyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 459

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 149/443 (33%), Gaps = 59/443 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + +  +W  SG    +      L 
Sbjct: 33  WDYGPLGVELKENVRRQWWRTMVQQRDDVVGLDSAVILARKVWEASGHIAEFVD---PLT 89

Query: 98  DRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-EF 155
           +       +   H EE         + S   L       +  F  E +   G+M++    
Sbjct: 90  ECQSCHKRFRADHLEEAYEAKHGKPLTSLTELNCPNCGNKGTF-TEPKMFNGLMKTYLGP 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  D     L PE ++     +FV+Y  +          +  +  P G   + +      
Sbjct: 149 VESDEGLHYLRPETAQ----GIFVNYKNV--------ETVARKKPPFGIAQTGKSFRNEI 196

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T    +F +++F    +        D       + +    Y           F   P+ K
Sbjct: 197 TPGNFIFRTREFEQMEMEFFVEPGSDEQWHEYWLSERWNWYLDLGLSEGNLRFYEHPKEK 256

Query: 276 --RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYV 312
               S R +++ + F FG             T + L   +   G D        G+    
Sbjct: 257 LSHYSKRTVDIEYRFQFGGNEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQAKGERWMP 316

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R V A +  ++D                + +   +AP K++++ + + ++
Sbjct: 317 YVIEPAAGLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPL-SRNE 375

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++ A L K    V +DD    IG ++   D +G P  V V    + D  V ++
Sbjct: 376 ALSPKAKQLAADLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDDAVTVR 433

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
           +R T  +E + L++V  Y   R 
Sbjct: 434 NRDTMAQERIGLDQVERYLIERL 456


>gi|310764773|gb|ADP09723.1| hypothetical protein EJP617_00420 [Erwinia sp. Ejp617]
          Length = 441

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 143/441 (32%), Gaps = 53/441 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V  I+++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 22  QAIRGMNDYLPAETAVWQRVEQILKQVLSSYGFSEIRMPIVEQTPLFKRAIGEVTDVVEK 81

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 82  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 137

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +R E   IG   +    
Sbjct: 138 YRQFHQIGAEVFGLQGPDIDAELIMM---TARWWKALGIAD-HVRLELNSIGSLEARANY 193

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   +++    +  +    +    
Sbjct: 194 RHALVAFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDIQALLNDAPTLGDYLDDESREHF 253

Query: 262 VHNEKLFDSLP---ENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               +  D+        +   RG++     +F       G + ++     + G      G
Sbjct: 254 AGLCRQLDAAGIAYRVNQRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGG 313

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +             P ++  + + A  Q  + A   
Sbjct: 314 RATPAV--GFAMGLERLVLLVQAVN---------PEFEPTRVVDVYVIASGQGVQSAALL 362

Query: 368 IYARLSKVGCDVFWDDMGEQIG-----SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +L     ++         G      QFA AD  G  + +++G   V++ ++  K   
Sbjct: 363 LAEQLRDALPELKLMS---NFGGGNFKKQFARADKWGARIALVLGEDEVANGQLVFKDLR 419

Query: 423 TGIREDMSLEEVINYASHRFS 443
            G ++ ++  +     +    
Sbjct: 420 NGEQQTLAQRDAATTLAALLQ 440


>gi|226307195|ref|YP_002767155.1| glycyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|229493158|ref|ZP_04386950.1| glycyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|226186312|dbj|BAH34416.1| glycyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|229319889|gb|EEN85718.1| glycyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 463

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 121/381 (31%), Gaps = 76/381 (19%)

Query: 84  GRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           G++       M+       +        +   T + +  +       S +  PF   QI 
Sbjct: 134 GQWTEPRDFNMMLKTYLGPVESEEGMHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIG 193

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ P   + R+REF   +                                     
Sbjct: 194 KSFRNEITPGNFIFRTREFEQMEM------------------------------------ 217

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                       EF V    GE +    + ++D+ +        +  +L           
Sbjct: 218 ------------EFFVK--PGEDEQ-WHQYWIDYRLDWYTGLGINKDNLRLYEHAPEKLS 262

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQM 314
             +    + +       ++     GI     F   T  K+S      +    G+ +   +
Sbjct: 263 HYSKGTTDIEYRFHFQGSEWGELEGIANRTDFDLSTHSKHSGTELNYYDQTTGERYTPYV 322

Query: 315 GSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVC 361
                G  R + A +  ++                 +     +AP K +++ + + +   
Sbjct: 323 IEPAAGLTRSLMAFLVDAYTEDEAPNSKGGVDKRTVLRLDRRLAPVKAAVLPL-SRNADL 381

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + + A+L +   +V +DD G  IG ++   D +G P  + V    + D  V ++ R
Sbjct: 382 TPKAKDLAAQLRQ-NWNVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTVRER 439

Query: 422 LTGIREDMSLEEVINYASHRF 442
            +  +E ++L++V +Y + R 
Sbjct: 440 DSMAQERVALDQVESYLAARL 460


>gi|148381458|ref|YP_001255999.1| glycyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153933636|ref|YP_001385833.1| glycyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935948|ref|YP_001389240.1| glycyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|148290942|emb|CAL85078.1| glycyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152929680|gb|ABS35180.1| glycyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152931862|gb|ABS37361.1| glycine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 463

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 120/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N            LG+    +R        D S
Sbjct: 215 FTFRTREFEQMELE-FFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRF------RDHS 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E                         E + + +  S    +  +            +  
Sbjct: 268 QE-------------------------ELSHYSNATSDIEFLFPFGWGELWGVADRTDFD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
                E+                           +     K+ Y        +GA RVV 
Sbjct: 303 LKKHMEHSGE---------------------DLNYLDPATKERYVPYCIEPSLGADRVVL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        D  +++Y+ LSK   
Sbjct: 342 AFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LSDKSQEVYSMLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R T  +  +++ E+  +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRDTMNQIRVNINELEKF 456

Query: 438 ASHRFS 443
              +  
Sbjct: 457 IEDKLE 462


>gi|297181247|gb|ADI17441.1| histidyl-tRNA synthetase [uncultured Rhodospirillales bacterium
           HF0070_31K06]
          Length = 414

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 139/433 (32%), Gaps = 47/433 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G +  LP   +A  +V    R+   R G  EM+ P  +S+D++  +     D   K
Sbjct: 5   QPVRGTHDLLPEAMRAHRSVIGCARDVAERYGFEEMATPIFESSDVFRRTLGDTSDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM     +  + +   P +   +   F S   + ++ P  F+     FR E RP+ G  R
Sbjct: 65  EMYTFTTKGGEEITLRPENTAGVARCFISEGLA-QSTPLKFFYAGPMFRHE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F      +       +      +  +  RI   LGL+   +  +   +G   S    
Sbjct: 121 LRQFHQIGIETVGFAGPQADIE---IIAAGARILSELGLQGKTV-LQLNTLGDSESRSVY 176

Query: 212 VLADTGETQVFC---SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
             A            S++  D    +     D     +  V      +    +  +   F
Sbjct: 177 REALVTYFTKRVDELSQESRDRLNRNPLRILDSKNEGDRSVVADAPSFTNHLNEESRAFF 236

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           + + E         E+      G  Y    +   + T  GA G      M          
Sbjct: 237 EQVQEGLTALGIAFELNERLVRGLDYYGHTAFEFTTTELGAQG----AVMAGGRYD---- 288

Query: 325 VAAVIESSHDGK--GIIW-------------PDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +IE+    K  GI W             P   A   ++L+ + A           + 
Sbjct: 289 --GLIETMGGPKTPGIGWAAGVERLAMLRGDPPP-ARRPVALVPLGA---AAEARAFVLA 342

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G  V     G  +G +   AD +     V++G   ++     ++    G +E++
Sbjct: 343 EELRASGLRVDVGFSGN-LGRRMKRADRMNAAAAVLIGDDELAKDVATVRDMDGGEQEEV 401

Query: 430 SLEEVINYASHRF 442
            L  +    S   
Sbjct: 402 PLGALRERLSGYL 414


>gi|239828654|ref|YP_002951278.1| glycyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|239808947|gb|ACS26012.1| glycyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 460

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/441 (15%), Positives = 144/441 (32%), Gaps = 50/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML--- 94
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGTELKNNIKRAWWKKFVQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDCK 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +   R+    +     EE   ++      S+  +     +  +   +     F  +R  +
Sbjct: 92  QCKARHRADKLIENALEEKGIEMVVD-GLSFEKMEELIKEHNIACPECGSHDFTNIR--Q 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRL--GLKSIPMRAESGPIGGDL 206
           F +       +T   +   Y +      +FV++  +   +   L     +     IG   
Sbjct: 149 FNLMFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQ-----IGKSF 203

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDVH 263
            +E      T  T+ F   +   F  P E  ++ D                P       H
Sbjct: 204 RNEITPGNFTFRTREFEQMELEFFCKPGEELEWFDYWKQFCKQWLLSLGMKPENIRLRDH 263

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKGAD--------GKDHY 311
            ++                  G    +G    T Y L     + G D         + + 
Sbjct: 264 TKEELSHYSNATTDIEYKFPFGWGELWGIASRTDYDLKQHMEYSGEDFRYIDQETNERYI 323

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RV  A +  ++D + +             ++AP+K ++  +        
Sbjct: 324 PYCIEPSLGADRVTLAFMIDAYDEEELEDGTTRTVMRLHPALAPYKAAVFPLSKK---LA 380

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    I+A LSK    V +D+ G  IG ++   D +G P  +        D KV ++ R 
Sbjct: 381 EGARNIFADLSKH-FMVDYDESG-SIGKRYRRQDEIGTPFCITYDFDSEQDGKVTVRDRD 438

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + + E+ ++   +  
Sbjct: 439 TMEQVRIPISELKSFLEEKIQ 459


>gi|228989226|ref|ZP_04149220.1| Seryl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228995409|ref|ZP_04155080.1| Seryl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229003023|ref|ZP_04160881.1| Seryl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228758223|gb|EEM07410.1| Seryl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228764335|gb|EEM13211.1| Seryl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228770501|gb|EEM19071.1| Seryl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 424

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I S   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILSSEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   LGL    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLGLPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|301301210|ref|ZP_07207366.1| histidine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851209|gb|EFK78937.1| histidine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 431

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 148/443 (33%), Gaps = 62/443 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP        V    RE   +    EM  P  +S +++   SG   D 
Sbjct: 1   MKYQRPKGTADILPSESAKWQYVEEKARELFKKYRYEEMRTPIFESFEVFSRTSGETSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    + RS +++         PF  Y +   FR E 
Sbjct: 61  VTKEMYDFYDKGDRHITLRP---EGTAGVVRSFVENKLYGPEVQKPFKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R REF      +F +           M V  L+     GL S+ +   +    
Sbjct: 117 RPQSG--RLREFHQIGVEAFGVDNPTLDVEVMAMAVDLLK---SFGLNSLRVAVNTLGDL 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +      D ++ 
Sbjct: 172 ETRNNYRQALIDYLEPFEAELSDDSKERLHKNPLRVLDSKDEKDKEIVANAPSILDYLTE 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT---- 301
           ++  + +    +  +D+  E + DS                IF   +  S   +      
Sbjct: 232 DA-QKHFETVKSLLNDLGIEYVIDSNMVRGLDYYNH----TIFEIMSD-SKAFNGKWTTV 285

Query: 302 -----FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                + G     G      +G +G+G  R++  +     D +    P    P  + ++ 
Sbjct: 286 CAGGHYSGLVEQLGGPQTPGVG-FGLGVERLLLIL-----DAEEDALPIEN-PLDVYVVG 338

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I     V   A  K+   L   G     D +  +   QF  A+ L     + +G   + +
Sbjct: 339 IG---DVTNAATLKLVQNLRHQGFTADRDYLNRKPKGQFKSANRLNARFTLTIGETELQE 395

Query: 414 SKVEIKHRLTGIREDMSLEEVIN 436
            +  +K    G    + L +V N
Sbjct: 396 QEANLKFMENGNEISVKLADVEN 418


>gi|259502226|ref|ZP_05745128.1| histidine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169844|gb|EEW54339.1| histidine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 425

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 135/430 (31%), Gaps = 40/430 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M +Q  KG    LP      + V A  RE   + G   +  P  +   ++        D 
Sbjct: 1   MDYQKPKGTADLLPGTTGLWEKVEANAREVFRQFGYRGIRTPMFEDYRVFARNVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +       P     Y +   FR E RP+
Sbjct: 61  VEKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF---------HRLGLKSIPMRA 197
            G  R REF      + +            M ++  R F         + LG K +    
Sbjct: 120 SG--RQREFHQIGVEALNNESPQIDVEVIAMAMALFRKFGVPNVKLVINTLGDKQVRQDY 177

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I     H   + AD+ E         +D     +     D  S+   ++  +  Y 
Sbjct: 178 REALINYLKPHYDELSADSQERLYKNPLRVLDSKDAGDQKLVADAPSILDYLDDESQAYF 237

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                   K      E      RG++     IF   +  S      +        Y  + 
Sbjct: 238 DQVQA-LLKELGIDYEIDTNMVRGLDYYNHTIFEIMSD-SPVFGGGYTTVCAGGRYNGLI 295

Query: 316 S-----------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           S           +G+G  R++  + + + D          AP     + + + D    + 
Sbjct: 296 SQLGGPEEGGIGFGMGVERLMLLLEQENPDF---------APQDQLDLFLASADDQGDNL 346

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  ++ + G     D  G ++G Q   A         + G + VS  + ++K+  T 
Sbjct: 347 AFELLNKVRQHGIVADKDYSGVKVGKQIKEAFRRNAKYFAVFGDREVSAGQFQLKNAATK 406

Query: 425 IREDMSLEEV 434
              ++ + + 
Sbjct: 407 DAVEVKVADF 416


>gi|328882342|emb|CCA55581.1| Glycyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 459

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 145/443 (32%), Gaps = 59/443 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+               + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTAREDVVGIDSSVILATEVWEASGHVATFTDPLTECT 92

Query: 98  DRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
             + +         +EE    +     +S  +L       +  F  E +   G++ +   
Sbjct: 93  SCHKRYRADHLEEAYEEKHGRL----PESLTDLNCPNCGNKGTF-TEPKQFSGLLSTHLG 147

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVL 213
                     L PE ++  +          F ++   S          +G    +E    
Sbjct: 148 PTQDSGSVAYLRPETAQGIFTN--------FAQVQTTSRKKPPFGIAQMGKSFRNEITPG 199

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                T+ F   +   F  P E+  + +                  +    E   +   +
Sbjct: 200 NFIFRTREFEQMEMEFFVKPGEDEQWQEYWMEQRWNWYTGLGLREENMRWFEHPKE---K 256

Query: 274 NKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYV 312
               S R  ++ + F FG             T Y L   A   GA+        G+ +  
Sbjct: 257 LSHYSKRTADIEYRFSFGGSEWGELEGVANRTDYDLSAHAKASGANLSFLEQESGERYTP 316

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R + A +  ++                 +     +AP K++++ +  + Q
Sbjct: 317 YVIEPAAGVGRAMLAFLLDAYIEDEAPNAKGVMEKRTVLRLDHRLAPVKVAVLPLSRNPQ 376

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + + A L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++
Sbjct: 377 -LSPKAKGLAADLRQ-NWNIEFDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLDDNAVTVR 433

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  +E +SL+++ +Y   R 
Sbjct: 434 ERDTMKQERVSLDQIQSYLGSRL 456


>gi|238924230|ref|YP_002937746.1| glycyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|259511935|sp|C4ZAV7|SYG_EUBR3 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|238875905|gb|ACR75612.1| glycyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 465

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 121/373 (32%), Gaps = 84/373 (22%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F   P      +      Y R F R     LG+K   MR      
Sbjct: 214 FTFRTREFEQMELEFF-CEPGTDLEWFK-----YWRGFCRDWLISLGIKEDEMRLRD--- 264

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                       D  E   +                          +             
Sbjct: 265 -----------HDPAELAFYS---------KGTTDIEFLFPFGWGELWGIADRTDYDLGR 304

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           H E     L                              F     + +   +    +GA 
Sbjct: 305 HQEVSGQDLTY----------------------------FDDQKNEKYLPYVIEPSLGAD 336

Query: 323 RVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           RVV A + +++D + I             +  ++AP KI ++ +        ++ EK++A
Sbjct: 337 RVVLAFLCAAYDEEDIGTPEKPDVRTVFHFHPALAPVKIGVLPLSKK---LNESAEKVFA 393

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +LSK   +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E ++
Sbjct: 394 QLSKT-YNCEYDDRG-TIGKRYRRQDEIGTPFCVTYDFDSEEDHCVTVRDRDTMEQERIA 451

Query: 431 LEEVINYASHRFS 443
           ++E+  Y + +F 
Sbjct: 452 IDELDAYFAKKFE 464


>gi|296454481|ref|YP_003661624.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183912|gb|ADH00794.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 490

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 162/493 (32%), Gaps = 77/493 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M +SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAQSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +   ++WV SG    +     E L    RN    +     E+   
Sbjct: 54  MVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECLNCHKRNRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K              + +  E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 KMPENGMKD-----IVCPNCGTRGQWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGI 168

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
           +             +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 169 F-------------VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F  P  + ++                    +  H E   +   +    S R +++ + 
Sbjct: 216 EFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKE---KLSHYSKRTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T + L   +   G D        G+ +   +     G  R + 
Sbjct: 273 FGFQGSDWGELEGIANRTDFDLSAHSKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +  ++D                +     +AP K +++ +    ++     + +   L 
Sbjct: 333 CFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQNLADDLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++
Sbjct: 392 FNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQERIALDK 450

Query: 434 VINYASHRFSNNR 446
           V +Y + R    R
Sbjct: 451 VADYVAARIGEKR 463


>gi|29840653|ref|NP_829759.1| seryl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301682|sp|Q821P2|SYS_CHLCV RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|29835003|gb|AAP05637.1| seryl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 426

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 80/253 (31%), Gaps = 12/253 (4%)

Query: 8   LPILQENPRDAEIASHKL--MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           LP     P+     + KL  +           G  ++   G      +   +  +Q   G
Sbjct: 129 LPTFSFTPKHHVELNQKLQILDFKLPAKTSGSGWPAYKNQGVMLEWALLTYLLNKQREHG 188

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                 P L   ++   SG+   +        +  D+++   PT E V+       I + 
Sbjct: 189 FQLWLPPLLVKREILFGSGQIPKF-DGQYYCVEDGDQSLYLIPTAEVVLNGFHSQEIFNE 247

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++LP  +      FR E         G++R  +F   + ++F  TPE +  +Y KM    
Sbjct: 248 KDLPIYYAACTPCFRREAGAAGANERGLVRVHQFNKVEMFAF-TTPEQADQAYEKMLAVV 306

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I   L L        +G +    S     E  +       +V       DF      T
Sbjct: 307 EDILTELKLPYRLSLLSTGDMSFTASKTIDAEVWLPGQQSYYEVSSISQCTDFQSRRSET 366

Query: 238 DFDDIISLNSIVE 250
            + D       + 
Sbjct: 367 RYKDSQGKMHFIH 379


>gi|329119631|ref|ZP_08248312.1| serine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464228|gb|EGF10532.1| serine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 430

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 85/249 (34%), Gaps = 19/249 (7%)

Query: 20  IASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVP 72
           +  H  L  + G+  + +    G    L  G+ A     +   + +    R G  E   P
Sbjct: 138 VKDHVDLGEKLGLDFETAAALSGARFSLMKGKIARLHRALAQFMLDTHTQRHGYTECYTP 197

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + S      +G+   +G+++  +    D+A       PT E  +T+  R  I     LP
Sbjct: 198 YIVSDTTLFGTGQLPKFGEDLFHVTRGGDEAKTTQYLIPTAEVTLTNTVRERILPASELP 257

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +  +M     +I 
Sbjct: 258 LKLTAHSPCFRSEAGSHGKDTRGLIRQHQFDKVEMVQI-VRPEASYAALEEMVGHAEKIL 316

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             L L    +   +G +G   +     E  V A     ++    +  DF        F D
Sbjct: 317 QLLELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKARFKD 376

Query: 242 IISLNSIVE 250
               N +V 
Sbjct: 377 ENGKNRLVH 385


>gi|227542205|ref|ZP_03972254.1| histidyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182034|gb|EEI63006.1| histidyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 420

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 132/433 (30%), Gaps = 41/433 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P   +    V      E  R G   + +P  +   L+        D   
Sbjct: 6   FSAPKGVPDYVPPVSREFLAVRETFTHEAQRAGFEHIELPIFEDTHLFARGVGESTDVVT 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM    DR  +++   P     +      H      LP         FR E RP+ G  
Sbjct: 66  KEMYTFEDRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLVYSGPFFRYE-RPQAG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +     R +  +GL    +   S       P   
Sbjct: 123 RYRQLQQVGVEAIGVDDPALDAEIIALAD---RCYKSVGLTGYRLDLSSLGDAECRPAYR 179

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +    F+      E     ++      +  +  +  +++    ++    +  +       
Sbjct: 180 EKLQAFLRKLPLDEETQRRAEINPLRVLDDKRPEVQEMLVDAPLLLDHLSNSSREHFEVV 239

Query: 265 EKLFDSLPENKRV---SARGIEVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYV 312
           + L D    +  +     RG++              G +  +     + G  A      +
Sbjct: 240 KGLLDDFGVSYTINPKLVRGLDYYTKTCFEFVHEGLGAQSGIGGGGRYDGLMAQLGGQEL 299

Query: 313 QMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
               +G+G  R + A+  E    G         +P ++ +  +    +  R     +   
Sbjct: 300 SGIGFGLGVDRTLLALEAEGVSAG---------SPRRVDVYGVPLGSEAKRVLA-GVVNN 349

Query: 372 LSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L   G      + D G + G+    A   G    +++G + ++D  V ++      +E +
Sbjct: 350 LRAAGVSTDMSYGDRGLK-GAM-KGASRSGARYCLVLGEQELADGNVAVRDMNNHEQETV 407

Query: 430 SLEEVINYASHRF 442
           SL  V  +   R 
Sbjct: 408 SLSAVQAFLEERL 420


>gi|148642463|ref|YP_001272976.1| glycyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|261349423|ref|ZP_05974840.1| glycine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|148551480|gb|ABQ86608.1| glycyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|288861785|gb|EFC94083.1| glycine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 564

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDG----KGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R+V +V+  S           +  SVAP ++ +  +  + +  R
Sbjct: 426 GEKIVPHVIEPSFGIDRIVYSVLLHSFKETDTKDYFKFAPSVAPVQVGIYPL-VNKEGPR 484

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  +L + G  V +D  G  IG ++A AD +G PL + V    + D+KV +++R 
Sbjct: 485 EIAIEITDKLRESGFKVEYDVSG-TIGKRYARADEIGIPLAITVDFDSLEDNKVTVRNRD 543

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +E ++++E+ +Y    + 
Sbjct: 544 SEAQERIAIDEIKDYLEEYYK 564



 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 63/195 (32%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESG------ 84
           I+    G   + PLG    +N+    R++     G  E+  PT+   ++   SG      
Sbjct: 22  IYSGVSGFTDYGPLGASLKNNIMQKWRKQYVSGEGFYEIEGPTVMPKEVLKASGHVDNFT 81

Query: 85  -------------RYDSYGKE--------------------------------------- 92
                        R D   +E                                       
Sbjct: 82  DPMTKCEECGEVFRADHIIEEVIGEDVESLENEELDQIVIDNAIKCPECGGKLSNIWNYN 141

Query: 93  -MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFG 148
            M +     + DK     P   + +  +F+   + +R  LPF   Q+   +R+E+ PR G
Sbjct: 142 LMFKTMIGAKGDKVGYMRPETAQGIFILFKRLERFFRGKLPFGVVQLGKAYRNEISPRQG 201

Query: 149 VMRSREFLMKDAYSF 163
           V+R REF   +A  F
Sbjct: 202 VIRLREFTQAEAEIF 216


>gi|197124303|ref|YP_002136254.1| seryl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|238689868|sp|B4UFJ8|SYS_ANASK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|196174152|gb|ACG75125.1| seryl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 435

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 9/183 (4%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G    +  G  A     + +   +     G  E+  P L + +    +G+   + +++ 
Sbjct: 161 SGSRFTILKGAAARLERAIVSFFIDVHTSRGYTEILPPYLVTGETMTGTGQLPKFEEDLF 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           +    N+  M   PT E  +T++ R  I     +P ++      FR E     R   G+M
Sbjct: 221 KTT--NEPPMYLIPTAEVPVTNMHRDEIFEASAMPVSYCAFSPCFRAEAGSAGRDTRGIM 278

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R  +F   +        E S+  + KM      +  RLGL    +   +G +G   +  +
Sbjct: 279 RQHQFHKVELVKLS-KAEESEAEHEKMLDDACEVLRRLGLHFRVVLLCAGDMGFSSAKTY 337

Query: 211 IVL 213
            + 
Sbjct: 338 DIE 340


>gi|330469568|ref|YP_004407311.1| glycyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328812539|gb|AEB46711.1| glycyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 459

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 155/445 (34%), Gaps = 63/445 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     +     R   + +    + + D+W  SG  D++      L 
Sbjct: 33  WDYGPLGVELKENVRRQWWKTMVQQRDDVVGLDSAVILARDVWAASGHLDAFVD---PLT 89

Query: 98  DRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           +       +   H EE   +     + S   L       +  F  E +   G+M++  FL
Sbjct: 90  ECQSCHKRFRADHLEEAYAEKHGKPLASLTELNCPNCGNKGTF-TEPKMFNGLMKT--FL 146

Query: 157 ---MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                D     L PE ++     +FV+Y  + +    K     A++   G    +E    
Sbjct: 147 GPVESDEGLHYLRPETAQ----GIFVNYNNVANAARKKPPFGIAQT---GKSFRNEITPG 199

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                T+ F   +   F  P  +  + +              Y           F   P+
Sbjct: 200 NFIFRTREFEQMEMEFFVEPGTDEQWHEYWLSER-----WNWYVDLGLSAENMRFYEHPK 254

Query: 274 NK--RVSARGIEVGHIFYFG-------------TKYSLPM-------SATFKGADGKDHY 311
            K    S R +++ + F FG             T + L           ++      + +
Sbjct: 255 EKLSHYSKRTVDIEYRFQFGGSEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQTKSERW 314

Query: 312 -VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAH 357
              +     G  R V A +  ++D                + +   +AP K++++ + + 
Sbjct: 315 VPYVIEPAAGLTRAVLAFLLEAYDVDQAPNAKGKMEERTVMRFDPRLAPVKVAVLPL-SR 373

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++      + + A+L K    V +DD    IG ++   D +G P  V V    + D+ V 
Sbjct: 374 NEALSPKAKDLAAQLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVT 431

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           I++R T  +E ++L++V  Y     
Sbjct: 432 IRNRDTMAQERIALDQVERYLIDHL 456


>gi|295104663|emb|CBL02207.1| glycyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3]
          Length = 473

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 121/369 (32%), Gaps = 66/369 (17%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +       P T + +  +       + R LPF   Q+   FR+E+ P  
Sbjct: 152 MFKTAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F              + +Y + +       LG+K   +R      
Sbjct: 212 FTFRTREFEQMECEFFCKPGTDLD------WFAYWKDYCENWLLSLGIKKEHLRLRD--- 262

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                HE   LA       F S+   D       TD+ ++  +          +   S  
Sbjct: 263 -----HEPAELA-------FYSRATTDIEYAFPFTDWGELWGIADRTNYDLTRHQEASGK 310

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             E       E+         +G       + +L         +         S G   +
Sbjct: 311 SLEYFDSETNEHYIPYVIEPSLGC-----DRVALAFLCEAYDEEH-----LTDSKGKEDV 360

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R V            +    ++AP+K +++ +        +   +I   LSK    V +D
Sbjct: 361 RTV------------LRLHPALAPYKCAVLPLSKK---LGEKAMEIRNELSKY-FMVDYD 404

Query: 383 DMGEQIGSQFAVADLLGFPLQV-----IVGSKF---VSDSKVEIKHRLTGIREDMSLEEV 434
           D G  IG ++   D +G P  +      VG +     +D+ V ++ R T  +  M + E+
Sbjct: 405 DTG-SIGKRYRREDEIGTPFCITVDFDTVGDEAKGIAADNCVTVRDRDTMEQVRMPISEL 463

Query: 435 INYASHRFS 443
            +Y   +  
Sbjct: 464 KSYIESKIE 472


>gi|82777899|ref|YP_404248.1| histidyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|309784735|ref|ZP_07679368.1| histidyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|123755716|sp|Q32D48|SYH_SHIDS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81242047|gb|ABB62757.1| histidine tRNA synthetase [Shigella dysenteriae Sd197]
 gi|308927105|gb|EFP72579.1| histidyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 424

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 132/437 (30%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPSETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y      +Y I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQHLWY-IGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D       +    + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTSPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|296109164|ref|YP_003616113.1| histidyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295433978|gb|ADG13149.1| histidyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 406

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 130/421 (30%), Gaps = 36/421 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           MI +  +G   + P   K    V   +RE     G  E+  PT +S +L   ++G  +  
Sbjct: 1   MISK-PRGTRDFTPEEMKKRRYVEKKLREVFESYGYEEILTPTFESFELIAKKTG--EEI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D   + +   P     +   + + +K+Y   P   Y     FR E RP+ G 
Sbjct: 58  RKQLYVFKDHGGRELSLRPEMTSPVVRFYLNELKNY-PKPLRLYYFANCFRYE-RPQAG- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLK-----SIPMRAESGPIG 203
            R REF            E +     N        I     L+      +        +G
Sbjct: 115 -RFREFWQMGCELIGCKREVADAEVINLAIDGLKNIDVEFSLEIGHLGVLRGILRKFKVG 173

Query: 204 GDLSHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            +   +   L D  + +       + +D        +  ++     I+E+         +
Sbjct: 174 EEEEVKIRRLIDKEDYESLDKYLTEILDKEKRDLIFNILELKGGKEILEEAKELLKDFPE 233

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                               I  G     G  Y   M     G  G       G Y    
Sbjct: 234 SLEAVRNLENILKYTYDNYKINFGIAR--GLDYYTGMVFEIYGKKGAKQICGGGRYD-NL 290

Query: 322 MRVVAA----VIESSHDGKGIIWPD--SVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           +          +  ++    I+      +   K  +I +    +       +I   L K 
Sbjct: 291 IETFGGEPEPAVGFAYGFDRIMMNVDIEIKEEKYLVIPLN---ENLIVKAMEIANILRKK 347

Query: 376 GCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G  V      E +G +       A+  G    VIVG K V + KV IK   +G ++ + +
Sbjct: 348 GKKVEL----EIMGRKLRKALDYANSKGISKVVIVGEKEVKEGKVTIKDMESGEQKLVDI 403

Query: 432 E 432
           E
Sbjct: 404 E 404


>gi|330984183|gb|EGH82286.1| seryl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 425

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 77/241 (31%), Gaps = 18/241 (7%)

Query: 15  PRDAEIASHKLMLRTGMIHQHS---KG--IYSWLPLGQKALDNVNAIIREEQ-NRTGAIE 68
           P D       L    GM         G           +    +   + +   +  G  E
Sbjct: 135 PVDHVKLGEDL---AGMDFTAGAELSGARFVVLKRHIARLHRALAQFMLDYHVDHHGYQE 191

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P L  A     +G+   + +++ ++A      +   PT E  +T++    I +  +L
Sbjct: 192 VYTPYLVGAQALRGTGQLPKFEEDLFKVARHGQADLYLIPTAEVTLTNLVADKILNEHDL 251

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   G++R  +F   +       P+ S  + + M     +I
Sbjct: 252 PIKMTAHTPCFRSEAGASGRDTRGLIRQHQFDKVEMVQI-AHPDNSMEALDSMTGHAEKI 310

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              L L    ++  +G IG         E  V +     ++    +  DF        F 
Sbjct: 311 LQLLELPYRVVQLCAGDIGFSAVKTFDIEVWVPSQEKYREISSCSNCGDFQARRLQARFR 370

Query: 241 D 241
           D
Sbjct: 371 D 371


>gi|291299567|ref|YP_003510845.1| glycyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290568787|gb|ADD41752.1| glycyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 461

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 141/445 (31%), Gaps = 61/445 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +     R   + +    + +  +W  +G    +   +    
Sbjct: 33  WDYGPLGVELKENIRRQWWKAMVQQRDDVVGIDSAVVLNRQVWEATGHVREFTDLLTECQ 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +          +     +       +       ++         R      R F  
Sbjct: 93  SCHKRFRA----DHLLEAYAAKHDGAEPADG------VRSLVCANCGTRGAFTEPRMFNT 142

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFI 211
               +F    E   +++     +   IF  +   ++   A   P      +G    +E  
Sbjct: 143 M-MKTFLGPIESEDNAHFLRPETAQGIF--VNFANVMTSARKKPPFGIAQVGKSFRNEIT 199

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T+ F   +   F  P  + ++ +               +  +    E   D L
Sbjct: 200 PGNFIFRTREFEQMEMEFFVEPGSDEEWHEFWLNERWNWYTDLGISEENIRRYEHPKDKL 259

Query: 272 PENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDH 310
               +   R +++ + F FG             T + L    T  G D        G+  
Sbjct: 260 AHYAK---RTVDIEYRFGFGGKEFDELEGIANRTDFDLSCHTTASGVDLSYFDQAKGERW 316

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAH 357
              +     G  R V A +  ++D                + +   +AP K++++ + + 
Sbjct: 317 TPYVIEPAAGLTRSVLAFLMEAYDVDEAPNTKGGIDKRTVLRFDPRLAPVKVAVLPL-SR 375

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++        +   L K    V +DD G  IG ++  AD +G PL V V    + D  V 
Sbjct: 376 NEKLSPKARDLAKDLRKRWV-VDFDDAGA-IGRRYRRADEIGTPLCVTVDFDTLDDDAVT 433

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           ++ R T  +E ++L +V +Y   R 
Sbjct: 434 VRDRDTMKQERVALSQVESYLIERL 458


>gi|2147427|pir||S58522 glycine-tRNA ligase (EC 6.1.1.14) - Thermus aquaticus
          Length = 506

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 118/360 (32%), Gaps = 60/360 (16%)

Query: 105 IYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++ + +  R L F   QI   FR+E+ PR  + R REF   +   F
Sbjct: 185 YLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYF 244

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                  R G      R            E +        ++  
Sbjct: 245 V----------------------RPGEDEYWHRY--------WVEERLKWWQ----EMGL 270

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           S++ +        +      +   I+ ++         + N   FD     K   A GI 
Sbjct: 271 SRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIANRTDFDLGSHTKDQEALGI- 329

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI----- 338
                    ++S    A      GK     +     G  R V A++  +   + +     
Sbjct: 330 --TARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEE 387

Query: 339 ----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFA 393
                    +AP K+++I +  +     +  +++ ARL  +G   V ++D G  IG  + 
Sbjct: 388 RIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGN-IGKAYR 446

Query: 394 VADLLGFPLQVIV----------GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D +G P  V V          G+  + D  V ++ R T  +  + ++E+  +   R  
Sbjct: 447 RHDEVGTPFAVTVDYDTIGQSKDGTTRLKD-TVTVRDRDTMEQIRLHVDELEGFLRERLR 505


>gi|217316817|gb|ACK37814.1| putative glutamyl-prolyl tRNA synthetase [Parastacus varicosus]
          Length = 133

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+GI   R +  +I    D K
Sbjct: 14  SGRGIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGIT-TRTIGVMIMVHGDNK 72

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +               +AC K+ A L+  G     D   
Sbjct: 73  GLVLPPRVASVQAIIMPVGITAKSSEQDKSNLVNACNKLAADLNAAGVRARCDLRD 128


>gi|182420049|ref|ZP_02951283.1| glycyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237669522|ref|ZP_04529502.1| glycine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376086|gb|EDT73673.1| glycyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237654966|gb|EEP52526.1| glycine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 463

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 117/377 (31%), Gaps = 95/377 (25%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     M   P T + +  +       S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKSEMYLRPETAQGIFVNFKAVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+RE                              F ++ L+           G DL 
Sbjct: 215 FTFRTRE------------------------------FEQMELEFFC------KPGTDLE 238

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                                          +      N ++     P       H E+ 
Sbjct: 239 W----------------------------HKYWKDYCWNFLLNLNVKPENLRMRDHGEEE 270

Query: 268 FDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKGAD--------GKDHYVQMG 315
                            G    +G    T Y L       G D         + +   + 
Sbjct: 271 LSFYSNATSDIEYLFPFGWGELWGIADRTDYDLNKHQEHSGQDLSYLDQTTNEKYIPYVI 330

Query: 316 SYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A +  ++D + +             ++APFK +++ +        +   
Sbjct: 331 EPSLGADRVALAFLIEAYDEEELEGGDSRTVMHLHPALAPFKAAILPLSKK---LSERAL 387

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++YA LSK   ++ +D+ G  IG ++   D +G P  + +  + + D  V I++R T  +
Sbjct: 388 EVYADLSKK-FNLDFDETG-SIGKRYRRQDEIGTPYCITIDFETLEDEAVTIRNRDTMEQ 445

Query: 427 EDMSLEEVINYASHRFS 443
           E + + E+ +Y      
Sbjct: 446 ERIKISELESYIQKSLE 462


>gi|167581706|ref|ZP_02374580.1| histidyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 446

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 138/440 (31%), Gaps = 55/440 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLS 207
           +F      +       +      M     R++  LGL  I +       AE         
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 208 HEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +++             + + +    + ++N    +I+     +  +    +       +
Sbjct: 188 IKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQ 247

Query: 266 KLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHYVQ 313
           +L  +            RG++     +F       G + ++     +             
Sbjct: 248 RLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTA 307

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
              + +G  R++  + E             + P +  + +  +   D   R+    +  R
Sbjct: 308 ACGWAMGIERILELLKEEH-----------LVPEQEGVDVYVVHQGD-AAREQAFIVAER 355

Query: 372 LSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI- 425
           L   G DV      +  G+ F      AD  G    VI G   V++    +K  R TG  
Sbjct: 356 LRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVANGTASVKPLRGTGDD 415

Query: 426 -----REDMSLEEVINYASH 440
                ++ + +E +  +  +
Sbjct: 416 GEKSVQQSVPVESLTEFLIN 435


>gi|323128235|gb|ADX25532.1| histidyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 426

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 148/445 (33%), Gaps = 61/445 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        V  + R+  ++    E+  P  +  ++   S     D 
Sbjct: 1   MAFQKPKGTQDILPGDAAKWQYVEYVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    + RS++++         P   Y I   FR E 
Sbjct: 61  VTKEMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R REF       F      +      M  +Y   F +LG+K + +   S    
Sbjct: 117 RPQAG--RLREFHQIGVECFGAANPATDVETIAM--AYH-FFEKLGIKDVTLHLNSLGSP 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P+   LS +     D    +V  SK+  D     +     D +  
Sbjct: 172 ESRAAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDE 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPM 298
            S                  +  D          RG++     IF F     G+  ++  
Sbjct: 232 ESQAHFEAVKAML-------EALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICA 284

Query: 299 SATFK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              +    G  G       G +G+G  R++  +     + +GI  P       + L  + 
Sbjct: 285 GGRYDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDVYLAVLG 337

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      ++   + + G     D +G +I +QF  AD     L + +G   V   K
Sbjct: 338 DG---ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGK 394

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
             IK+  +    ++S E+++   ++
Sbjct: 395 AVIKNNRSRQELEVSFEDIMTNFAN 419


>gi|268318023|ref|YP_003291742.1| glycyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262335557|gb|ACY49354.1| glycyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 481

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/480 (15%), Positives = 148/480 (30%), Gaps = 68/480 (14%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I   S        +Y + PLG +   NV     E         + +    L  
Sbjct: 11  LCKRRGFIFPSSEIYGGLAAVYDYGPLGVELKRNVQQRWWEAMVYEHENIVGLDAAILMH 70

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH--EEVMTDIFRS-------------- 120
             +W  SG  D++      L D       Y      E+ +  +                 
Sbjct: 71  PMVWKASGHVDAFND---PLIDDRQSKRRYRADQLIEDYIEKLRAKGETERAEALHRRLI 127

Query: 121 HIKSYRNLPFTFYQIQLKFR--DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +  ++P   YQI +  R        F     R+F +   +   + P  S+ +   + 
Sbjct: 128 EALNAEDMPKALYQIIMDERIPSPDSGAFDWTEVRQFNL--MFVTHVGPVASEETKVYLR 185

Query: 179 -VSYLRIFHRLGLKSIPMRAESG--------PIGGDLSHEFIVLADTGETQVFCSKDFMD 229
             +   IF    +    ++  S          IG    +E +        + F   +   
Sbjct: 186 PETAQGIF----VNFHNVKDSSRLQIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQY 241

Query: 230 FPIPSENTDFDDIISLNSIVEQ-----WTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           F  P    +  +      +                         D+  + + +   G + 
Sbjct: 242 FVKPGTQMEAFEAWKEKRLQWHIENGIRPDHLRFHVHEKLAHYADAAVDIQYLFPMGWQE 301

Query: 285 GHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAM-------RVVAAVIESSHDGK 336
               +  T Y L     F G   +         Y    +       R +  ++  ++D +
Sbjct: 302 VEGIHSRTDYDLRRHQEFSGKKMEYFDPQTQERYIPYVVETSAGLDRTILMLLCEAYDEE 361

Query: 337 G--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                    +     +AP K++++ +   D    +  + +   L     + F+D+ G  I
Sbjct: 362 EVEGETRVVLRLHPRLAPIKVAVLPLVRKD-GMPERAQALARDLRPF-LNTFYDEKGA-I 418

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G ++   D +G P  V + S+ + D  V ++ R T  +E +   +V+ Y   R    +PV
Sbjct: 419 GRRYRRMDEVGTPFCVTIDSQTLEDGTVTVRDRDTMQQERVHETQVLAYIKDRLRQWKPV 478


>gi|320010915|gb|ADW05765.1| glycyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 460

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/450 (14%), Positives = 142/450 (31%), Gaps = 72/450 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+               + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTAREDVVGIDSSVILAPEVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
             + +         +EE      +  +    +L       +  F  E +   G++ +   
Sbjct: 93  SCHKRYRADHLEEAYEEKHG---KPPVNGLADLNCPNCGNKGTF-TEPKAFSGLLSTHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGDL 206
                     L PE ++            IF   G     ++  S          +G   
Sbjct: 149 PTQDTGSVAYLRPETAQ-----------GIFTNFG----QVQQTSRKKPPFGIAQMGKSF 193

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E         T+ F   +   F  P E+  + +                  +    E 
Sbjct: 194 RNEITPGNFIFRTREFEQMEMEFFVKPGEDEQWQEYWMEQRWNWYTGLGLREENMRWFEH 253

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMS--------ATFKGA 305
                 +    S R  ++ + F FG             T Y L             +   
Sbjct: 254 ---PQEKLSHYSKRTADIEYRFRFGGSEWGELEGVANRTDYDLKAHSEASGTDLFYYDQE 310

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLI 352
            G+ +   +     G  R + A +  ++                 +     +AP K++++
Sbjct: 311 KGERYTPYVIEPAAGVGRSMLAFLLDAYSEDEAPNAKGVMEKRAVMRLDPRLAPVKVAVL 370

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +  + Q      + + A L +   ++ +DD G  IG ++   D +G P  V V    + 
Sbjct: 371 PLSRNPQ-LSPKAKGLAADLRQ-NWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLD 427

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D+ V ++ R T  +E +SL+++ +Y   R 
Sbjct: 428 DNAVTVRERDTMKQERVSLDQIQSYLGSRL 457


>gi|261416780|ref|YP_003250463.1| seryl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373236|gb|ACX75981.1| seryl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326186|gb|ADL25387.1| serine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 428

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 97/292 (33%), Gaps = 16/292 (5%)

Query: 18  AEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A +    L  R G+            G   +  LG +    +     +E  + G  E + 
Sbjct: 139 ARVDHKTLGERLGIFDFERGAKISGSGFPVYRGLGSRLERALIQFFLDEHQKAGFEEFTP 198

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L + +    +G+   + ++M R     D  +   PT E  +T+++   +     LP  
Sbjct: 199 PYLVTRNTMRGTGQLPKFEEDMYRC--DKDDDLFLIPTAEVPLTNLYSGEVIPESELPKR 256

Query: 132 FYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
                  FR E     +   G++R  +F   +   F   PE S   + ++     ++  +
Sbjct: 257 ICAYSACFRREAGSYGKDTRGLLRLHQFNKVEMVYF-AHPEHSYEDHEELTRFGEKLLEK 315

Query: 188 LGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           LGL    +    G    G    ++  V A   +  +  S         +   +    +  
Sbjct: 316 LGLPYHRLALCKGDLGFGAAKCYDLEVYAPVEKKWLEVSSCSNFEDYQARRANIKTKVGG 375

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            ++           +      + D+  + K  S +  EV   +  G ++  P
Sbjct: 376 KNVYLHTLNGSGLATPRVMVGICDNY-QQKDGSLKIPEVLRPYMGGLEFITP 426


>gi|269140144|ref|YP_003296845.1| histidyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267985805|gb|ACY85634.1| histidyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304559978|gb|ADM42642.1| Histidyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 424

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 139/434 (32%), Gaps = 41/434 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + A +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTALWQPIEAALKQVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M   + ++   LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLAGPDIDAEIIMMTARWWKV---LGIAD-HVALELNSIGSLEARAAY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK---LF 268
             A     + + ++   D      +     + S N  V+         S+  +      F
Sbjct: 178 RDALVAYLEQYKNQLDEDCQRRMYSNPLRVLDSKNPQVQALLNEAPRLSEYLDADSREHF 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY--SLPMS--ATFKGADGK---------------D 309
           D L      +     V      G  Y          T  GA G                 
Sbjct: 238 DGLCRLLDDAGIAYTVNERLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGLVAQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKI 368
           H      + +G  R+V  V   + D      P      ++ LI      Q       E++
Sbjct: 298 HATPAVGFAMGLERLVLLVQAVNPD----FLPQR--AVEVYLIAAGEGTQSAAMRLAEQL 351

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L ++     +     +   QFA AD  G  + +++G   V + +V +K   +G ++ 
Sbjct: 352 RDALPQLRLMTNYGGGNFK--KQFARADKWGARIALVLGESEVQNGQVNVKCLASGEQQT 409

Query: 429 MSLEEVINYASHRF 442
           ++ ++     +   
Sbjct: 410 VAQDQAATLLATLL 423


>gi|251794129|ref|YP_003008860.1| seryl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247541755|gb|ACS98773.1| seryl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 427

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + + + +   ++ G  E+  P L + D  + +G+   + +++ +++D 
Sbjct: 165 FYRGLGARLERALISFMMDLHSDQHGYEEVLPPYLVNRDSLIGTGQLPKFEEDLFKISDS 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T++ R  I S   LP  F      FR E     R   G++R  +F
Sbjct: 225 D---YFLIPTAEVPVTNLHREEILSIEELPKHFVAYSSCFRSEAGAAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +       PE S     KM  +  ++   LGL    +   +G +G
Sbjct: 282 NKVELIKL-AKPEESYDELEKMTANAEKVLQLLGLPYRVLALCTGDMG 328


>gi|83747948|ref|ZP_00944979.1| Histidyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725366|gb|EAP72513.1| Histidyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 440

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 133/439 (30%), Gaps = 60/439 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 16  KGMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMY 75

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 76  SFTDSLNGEQLTLRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 131

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +              M     R++  LGL  + +          RA      
Sbjct: 132 QFHQVGVEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQAEERAAHRADL 188

Query: 204 GDLSHEFIVLAD--------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                +F  + D        T   +V  +K+     + +      D +   S+       
Sbjct: 189 IKYLEDFQDILDEDSKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGEASLKHFEGVQ 248

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP----MSATFKGADGKDHY 311
               ++     +   L          +        G + ++          +   GK   
Sbjct: 249 ALLKANNIPYTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAP 308

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDACEK 367
                + +G  R    +IE   + K       +AP      + +++     QV       
Sbjct: 309 A--CGWAMGVER----IIELLREEK-------LAPEPQGCDVYIVHQGDQAQVQALVA-- 353

Query: 368 IYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
              RL   G DV      +       SQF  AD  G    VI+G   V+    +IK  R 
Sbjct: 354 -AERLRDAGLDVILHCSPEGRNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQIKPLRG 412

Query: 423 T---GIREDMSLEEVINYA 438
                 ++ +  +++++  
Sbjct: 413 EPNADTQQTVPSDQLVDRL 431


>gi|194396786|ref|YP_002038709.1| histidyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|229558746|sp|B5E3C8|SYH_STRP4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194356453|gb|ACF54901.1| histidyl-tRNA synthetase [Streptococcus pneumoniae G54]
          Length = 429

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVXTIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFATKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 GQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|262305775|gb|ACY45480.1| glu- + pro-tRNA synthetase [Polyzonium germanicum]
          Length = 134

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++ G   + G  +S      F  A+  +  Y    S+G+ + R + A++    D  
Sbjct: 15  SGRGLQGGTSHHLGQNFSKMFEIVFDDAETNEKTYAHQNSWGL-STRSIGAMVMIHADNS 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++     ++  D+      D C      L   G     D       
Sbjct: 74  GLVLPPRVASMQVVVVPCGITVQTTDEERRALLDKCRAHETALKAAGVRCHLDHRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|221502959|gb|EEE28669.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 377

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 84/286 (29%), Gaps = 56/286 (19%)

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +    FR E R    G+ R REF   D +    T E +         S L +
Sbjct: 130 RHLPLRISEFGRVFRRERRSALCGLFRLREFTQDDGHIL-CTREQAVEEIKVQLASILHL 188

Query: 185 F-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G+    ++   G      S      AD+ E +   ++        +         
Sbjct: 189 YVQVFGISPEGVKVSLGSRPAKASRRSDASADS-EDEKLWTQAEAWLLEAARE------- 240

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                           S V  E+   +    K   +     G  +  GT   L +     
Sbjct: 241 -----------VLPNASSVETEEGGGAFYGPKLDFSLSDVQGRWWQTGTLQPLVL----- 284

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                     +    +G++    A++    +G   +W   +AP K  +  +    +  R+
Sbjct: 285 ----------IHRAAVGSLERFLALLLELRNGDLPVW---LAPVKAVVCPVSVQSREIRE 331

Query: 364 ACEKIYARLSK----VGCD------------VFWDDMGEQIGSQFA 393
             E++   L +     G              VF D     + S+  
Sbjct: 332 YAERVATVLRESVAPSGFSAEKEGSEDTATGVFVDLRPLHLNSKLK 377


>gi|217316819|gb|ACK37815.1| putative glutamyl-prolyl tRNA synthetase [Astacoides betsileoensis]
          Length = 134

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +               DAC K+ A L+  G     D   
Sbjct: 74  GLVLPPWVASVQAIIMPVGITAKSSEQEKSNLVDACNKLAADLNATGVRARCDLRD 129


>gi|326791444|ref|YP_004309265.1| glycyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542208|gb|ADZ84067.1| glycyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 461

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 123/365 (33%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 153 MFKTFQGVTEDSKNVVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQVGKSFRNEITPGN 212

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P      ++            LG+    MR        D S
Sbjct: 213 FIFRTREFEQMELEFF-CKPGTELEWFDYWRSYCKNFLLSLGVDENNMRL------RDHS 265

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +       T +     F    +    +  D  +  +    +    Y   +       
Sbjct: 266 AEELSHYSNATTDIEFKFPFGWGELWGIASRTDFDLKQHQEHSKQDMTYFDPTT------ 319

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                                   + +   +    +GA RV  A
Sbjct: 320 ---------------------------------------NEKYLPYVIEPSLGADRVTLA 340

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            +  ++D + +          +  ++AP K +++ +        +   K++  L+K   +
Sbjct: 341 FLCEAYDEETLEDGDTRTIFRFHPALAPVKAAVLPLSKK---LSEDAVKVFDILAKE-FN 396

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +D+ G  IG ++   D +G P  +      + D KV ++ R +  +E +++E+++ Y 
Sbjct: 397 VEFDEAG-SIGKRYRRQDEIGTPFCITFDFDSLEDQKVTVRDRDSMAQERIAIEDLVEYI 455

Query: 439 SHRFS 443
             R +
Sbjct: 456 RERMA 460


>gi|172037888|ref|YP_001804389.1| histidyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|226710879|sp|B1WVZ0|SYH_CYAA5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|171699342|gb|ACB52323.1| histidyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 433

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 129/426 (30%), Gaps = 31/426 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
            G    LP        V  +  +  +R    E+  P  +   L+    G   D  GKEM 
Sbjct: 8   PGTRDILPEEIGYWQYVETVATQILSRAMYYEIRPPIFEQTSLFERGIGEATDVVGKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             +DR D+++   P     +   +  +           +     FR E RP+ G  R R+
Sbjct: 68  TFSDRGDRSLTLRPEGTAGVVRAYLQNNLYAAGGVQRLWYCGPMFRYE-RPQAG--RQRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F              +      +      I   LGL+S+  + +   +G     +    A
Sbjct: 125 FHQIGLELIGTADPRADVE---VIALATDILKTLGLQSL--KLDINSVGDRNDRQNYREA 179

Query: 215 DTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   +     D  D    +     D        + Q            ++K FD  
Sbjct: 180 LVNYFLPYKAELDTDSQDRLQRNPLRILDSKDKRTKEINQNAPSILEHLGDASKKHFD-- 237

Query: 272 PENKRVSARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHYVQMGSYGIG 320
              + ++  GIE         G  Y         S  + A      G  +   +   G  
Sbjct: 238 QVQQLLTDLGIEYNINPCLVRGLDYYTHTAFEMISDDLGAQATVCGGGRYDGLVEELGGN 297

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVA--PFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
               V   I      + II    +   P     I I +  +        +  +L K G  
Sbjct: 298 PTPAVGWAIGM---ERLIILLKQLQSSPDMTPDIYIVSRGEAAEGQGLILAQKLRKEGLT 354

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  D  G   G QF  AD  G    +++G +  ++  V++K   +  ++ M+  E++   
Sbjct: 355 VELDMSGSAFGKQFKRADRSGAIACIVLGEEEATNKTVQLKWLQSKEQQAMTQAELLTKV 414

Query: 439 SHRFSN 444
                 
Sbjct: 415 GELIEQ 420


>gi|38233946|ref|NP_939713.1| histidyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|46396579|sp|P60914|SYH_CORDI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|38200207|emb|CAE49888.1| histidyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 423

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 132/432 (30%), Gaps = 41/432 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG+  ++P        V      + +  G   + +P  +   L+        D   K
Sbjct: 10  QAPKGVPDYIPPVSPEFLGVRDTFAHQAHLAGYEHIELPIFEDTTLFARGVGESTDVVTK 69

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADR D+++   P     +      H      LP         FR E RP+ G  R
Sbjct: 70  EMYTFADRGDRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLNYYGPFFRYE-RPQAG--R 126

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+       +  +           +    L++   +GL    +   S       P   +
Sbjct: 127 YRQLQQVGVEAIGVDDPALDAEVIALADRSLKV---IGLTGYRLELTSLGDHTCRPQYRE 183

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF+      E     ++      +  +  +  ++     ++    +  +        
Sbjct: 184 KLQEFLFKLPLDEETRHRAEINPLRVLDDKRPEIQEMTVDAPLMLDNLSDSSREHFELVT 243

Query: 266 KLFD---SLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQ 313
            + D             RG++      F       G +  +     + G  A      + 
Sbjct: 244 GMLDDLNVAYVVNPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQELS 303

Query: 314 MGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              Y +G  R + A+  E      G           +++  +       R+   +I   L
Sbjct: 304 GIGYALGVDRCLLALEAEQKRVTDGSR---------VNVFGVAMGSAAKREMV-RIIDAL 353

Query: 373 SKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G      + D G + G+    AD  G    +++G + + ++ V +K      + D+S
Sbjct: 354 RSAGISADMAYGDRGLK-GAM-KGADRAGARFALVLGDRELENNCVAVKDLAQQGQRDVS 411

Query: 431 LEEVINYASHRF 442
           L+ +I       
Sbjct: 412 LDNLILEIQSAL 423


>gi|312898436|ref|ZP_07757826.1| seryl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620355|gb|EFQ03925.1| seryl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 425

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y +L  G +    V   + +      G  E+  P + + D  + +G+   + ++M R+ 
Sbjct: 162 FYFYLGAGARLERAVYNFMLDMHTEVDGYTEVIPPYIVNRDSMLGTGQLPKFYEDMFRI- 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               + M   PT E  +T+ +R  I     LP     +   FR E     R   G++R  
Sbjct: 221 --EGQEMFMIPTAEVPLTNYYRGEIIDGNKLPVYLTAMTPCFRAEAGSAGRDTRGLIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   +   PE S    +K+  +   I   L L    +   +G IG   +     E
Sbjct: 279 QFHKVEMVKYVA-PETSYDELDKLTNNAEAILQALKLPYHVVCLCTGDIGFSAAKTFDVE 337

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               A     ++    +  DF     N  F
Sbjct: 338 VWFPAQGKYREISSCSNTEDFQARRANIRF 367


>gi|315038168|ref|YP_004031736.1| histidyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312276301|gb|ADQ58941.1| histidyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 428

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 141/437 (32%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQVGVESFGSSNPLADVQTIMMG---HDLLAELGVKNYQLHINTLGNEQVRKDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+  +LS +          ++  SKD  D     +     D +  +S    
Sbjct: 178 HDALVNYFTPVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDDSKQNF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +          +  + D            + E         E       G +Y      
Sbjct: 238 ESILKMLDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
             +  +G         +GIG  R++  + + +    + +GI            + NI   
Sbjct: 294 LVEEFNGPATPAV--GFGIGEERLMLVLEKQNPALFENRGI---------DFFITNIGDG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    +I   L K G +  +D   +++ +QF  AD       + +G K + +  + 
Sbjct: 343 ---TAQKAIEITRSLRKQGFEADFDVNQKKLKAQFKKADRDHAKYVITLGEKELENGVLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SLE++
Sbjct: 400 IKRLADGKTIDLSLEDI 416


>gi|242398072|ref|YP_002993496.1| Histidyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|242264465|gb|ACS89147.1| Histidyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 437

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 150/452 (33%), Gaps = 65/452 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKE 92
           Q  KG    LP        V   IRE     G  E+  PT +   L+   SG  +   ++
Sbjct: 8   QRVKGTRDLLPEDMIKRRYVFERIREVFEVYGFKEILTPTFEYTKLFELRSG--EEVVEQ 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +    D+  + +   P     +  +F +  +     P  +Y I   FR E  P+ G  R 
Sbjct: 66  LYAFEDKGGRNLSLRPDLTSSVARLFVNAFQ-TAPKPIKWYYITNMFRYEE-PQSG--RL 121

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF          +   +      +    +  +   GLK   +      +  + +    V
Sbjct: 122 REFWQAGVELIGSSNIEADAE---VIALLIESYLSTGLKEFTVNVGDRILLDEFAKMIGV 178

Query: 213 LADTGETQVFCSKDFMD-----FPIPSENTDFDDIISLNSI--------------VEQWT 253
             D G  ++   KD M+       +     + +DI  + ++               E +T
Sbjct: 179 KDDIGLMRLIDKKDKMERGEFVKALQEFGLNEEDINKVFTLIELKGKPDDVLPKARELFT 238

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------- 306
           +  A       E+LF+ L          I+ G    F    S+   A     D       
Sbjct: 239 SEIAKEELKKIEELFELLKAYGIKDYALIDFGIARGFDYYTSIVFEA-IADNDLGIGSIG 297

Query: 307 -------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---S 350
                        GK        + IG  R++  +          + P+    FK+    
Sbjct: 298 GGGRYDNLIEVFGGKPTPA--TGFAIGIERLIPIL------ESKELLPE----FKVGSDV 345

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +    ++   +    ++   L K      +D  G ++G     A+ +   + +I+G + 
Sbjct: 346 FVAYIGNELEIKKKAIEVTQTLRKANIKAEYDIQGRKLGKALDYANSIEVKVAIILGRRD 405

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +S+ KV I+   +G ++ +++E ++       
Sbjct: 406 LSEGKVTIRDMKSGEQKQVAIESIVEEVKKLL 437


>gi|298714373|emb|CBJ27430.1| Histidyl-tRNA Synthetase (C-terminal region) Histidyl-tRNA
           Synthetase (N-terminal region) [Ectocarpus siliculosus]
          Length = 576

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 141/441 (31%), Gaps = 56/441 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKE 92
           +  KG     P   +  + +    R   +  G  E   P L+S  L+  +SG  +   ++
Sbjct: 142 KPPKGTRDVFPEDMRLRNWLFGHWRGVASSFGFEEYDAPVLESESLYTRKSG--EEVTQQ 199

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +    D+  + +   P     +  +  +  KS   LP  ++ I   +R E R   G  R 
Sbjct: 200 LYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLT-LPVKWFSIPQCWRYE-RMTRG--RR 255

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEF 210
           RE    +   + ++   ++     +  + +  F R+GL  + + +R  S  +  ++ H  
Sbjct: 256 REHYQWNMDIWGVSGVAAEAE---LLGAMVTFFERVGLRAEDVGIRVNSRGVLTEVLHSL 312

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL--- 267
            V  D               P+ +   D  ++    + V++             E     
Sbjct: 313 GVPGDKHTATCVLVDKLDKMPLEAVAGDLAELGLEETSVKRLLEVMELRDMGGVEAFLGK 372

Query: 268 -----------FDSLPENKRVSARGIEV----GHIFYFGTKYSLPMSATFKGADGKDHYV 312
                      F             ++     G  +Y GT +            GK   +
Sbjct: 373 ESPAAEELRKLFALAESYGISDWLVLDCSVVRGLAYYTGTVF-EAF-----DRRGKLRAI 426

Query: 313 QMGSYGIGAMRVVA-------------AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             G      +                 AVI      +G++ P    P   +++     D 
Sbjct: 427 AGGGRYDALLESFGGEALPAAGFGFGDAVIVELLSDRGLL-PKEAGPGATAVV--FGWDD 483

Query: 360 VCRDACEKIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             + A  ++ A L + G  V         +   +   A  +G    V+V        KV 
Sbjct: 484 ELQGAATEVAASLRREGISVDLVLQPRKTKANFK--HATRVGATYVVMVAPSEWEAGKVS 541

Query: 418 IKHRLTGIREDMSLEEVINYA 438
           +K   T  ++++ + EV ++ 
Sbjct: 542 VKDLRTSDQKELPVGEVASHI 562


>gi|255327243|ref|ZP_05368317.1| glycine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295523|gb|EET74866.1| glycine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 459

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 130/408 (31%), Gaps = 71/408 (17%)

Query: 53  VNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
           +     ++     G  E++ P   +   W E   +    K  L   D  +      P   
Sbjct: 105 LENFEAKKGRAAEGMEEIACPNCGTRGEWTEPQNFSGLMKTYLGPVDNEEGLHFLRPETA 164

Query: 112 EVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           + +   F + +  S +  PF   QI   FR+E+ P   + R+REF   +   F + P+ +
Sbjct: 165 QGIFVNFNNVVTASRKRPPFGIGQIGKSFRNEITPGNFIFRTREFEQMEIEYF-VHPDDA 223

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              +N+                                             +    +  F
Sbjct: 224 DKYFNE---------------------------------------------WVEDCWSWF 238

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                N D      +        +      +           E   V+ R       +  
Sbjct: 239 VDLGINPDNMRRFDVPKEERAHYSAGTIDVEYRFGFQGSEWGELMGVANR-----TDYDL 293

Query: 291 G--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----------- 337
           G   ++S      F  A G+ +   +     G  R + A +  ++               
Sbjct: 294 GVHNEHSNAKLEYFDQATGERYVPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDKR 353

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +     +AP K +++ +    +   +   K+   L  +  +V +D+ G  IG ++   
Sbjct: 354 VVLKLDPRLAPVKAAVLPLSKKAE-LSEPATKLANELRGLW-NVDYDEAGA-IGRRYRRQ 410

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D +G P  + V    + D  V I+ R T  +E ++L++V +Y + R +
Sbjct: 411 DEIGTPFCITVDFDTLEDQAVTIRERDTMNQERVALDQVKSYLAARLA 458


>gi|325193197|emb|CCA27545.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 469

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 153/495 (30%), Gaps = 138/495 (27%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I   S+   G+   + + PLG     N+ +    E  Q R          L  
Sbjct: 16  LCRRRGFIFPGSELYGGLANTFDYGPLGTLMKHNIQSCWSREFIQKRFNCFAFDSSILLH 75

Query: 77  ADLWVESGRYDSYGKEMLRLADRN------------------------------DKAMIY 106
           +D+W  SG  DS+   M    + N                              ++  + 
Sbjct: 76  SDVWKASGHADSFTDPMSVCKECNARIRVDQLLSQKLGREWSTPLDITEFDKALERYNVA 135

Query: 107 GP----THE----EVMTDIFRS-----------------------------HIKSYRNLP 129
            P    TH     +    +FR+                                    LP
Sbjct: 136 CPQCAKTHCFQSTKHFNLLFRTNMGATDETCEWINLRPETAQGAYINFANVQSSMRAKLP 195

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F   QI   FR+E+ P   + R+REF   +   F   P  S           ++     G
Sbjct: 196 FGIGQIGKSFRNEISPGQFLFRTREFEQMELQFFTF-PSDSDEWMQYWTNECMQFLTTHG 254

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +    +R          +H+   LA         +   ++F  P    +   I +     
Sbjct: 255 INQGNIRL--------RAHDQEELA-----HYARATTDIEFHYPFGWKELWGIANRIDSD 301

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                     +   N   FD + +                                  K+
Sbjct: 302 LLRH----MQASGKNLHYFDPVTQ----------------------------------KE 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGK--------GIIWPDSVAPFKISLINIKAHDQVC 361
               +    +G  R++ A++  ++  +         +   + +AP++++++ +   D   
Sbjct: 324 LVPHIIEPALGLGRLMLAMLVDAYQEQVVLGRKRTLLRLHEEIAPYRLAVLPLLKKDP-L 382

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +Y  L      V +D  G  IG ++   D +G PL + V  + + D+ V ++ R
Sbjct: 383 MHLAEDLYNTL-ATKLCVDYDIAG-SIGRRYRRQDEIGTPLCITVDFETLDDNCVTVRDR 440

Query: 422 LTGIREDMSLEEVIN 436
            +  ++ +S+++++ 
Sbjct: 441 DSMEQKRISIDKLLT 455


>gi|218780599|ref|YP_002431917.1| histidyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|226737068|sp|B8FKS7|SYH_DESAA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218761983|gb|ACL04449.1| Histidyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 419

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 126/434 (29%), Gaps = 49/434 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEMLR 95
           G    LP   +   ++ +  R      G  E+ +P ++S +L+      D+    KEM  
Sbjct: 7   GFRDILPGQVELWQDIESKARVLLENFGFREIRLPIMESTELFARGIGADTDIVEKEMYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D   +     P     +   +  H  +  +    FY I   FR E RP+ G  R R+F
Sbjct: 67  FPDSKGRGQTLRPEATASVVRSYIEHGYAGSDPVQKFYTIGPMFRHE-RPQKG--RYRQF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH---------RLGLKSIPMRAESGPIGGDL 206
              +A  F +    +      M   +               LG      +     I    
Sbjct: 124 YQINAEMFGVASPLADVQIMYMLHLFFTGLDVPDVVTHVNSLGCPECRPKFREALISFVS 183

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                + +D            +D  +P          S+              + +    
Sbjct: 184 DKMDRLCSDCQRRADANPLRVIDCKVPGCKEAVQGAPSIQD-HLCPDCKEHFEAVIKGLD 242

Query: 267 LFDSLPENKRVSARGIEVGH--IFYFGTKYSLPMSATFKGA---------DGKDHYVQMG 315
             +   E      RG++      F   T      +A   G           GK+      
Sbjct: 243 GLNVPYEIDPRLVRGLDYYTRTTFEVQTTLLGAQNAVAGGGRYDGLVKILGGKETPAIGF 302

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           + G      +AA++    + K    P ++         I A     R          +  
Sbjct: 303 AVGFD---RLAALLG--AEEKDFTVPPAL--------FIAALGDEARKIAFGWLCDFNAR 349

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPL-----QVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G     D  G+ +      + +           +I+G   + +    +++  T  +E+++
Sbjct: 350 GVRAEMDYEGKSL-----KSQMKQANRFNAGRVLILGENELQNGMAVLRNMDTKEQEEVA 404

Query: 431 LEEVINYASHRFSN 444
           L+ + +  +   + 
Sbjct: 405 LDGLTDRVAALINQ 418


>gi|157144552|ref|YP_001451871.1| histidyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|157081757|gb|ABV11435.1| hypothetical protein CKO_00272 [Citrobacter koseri ATCC BAA-895]
          Length = 414

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 136/444 (30%), Gaps = 77/444 (17%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   YLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N  ++   P            H   Y       + I   FR E RP+ G  R R+F    
Sbjct: 64  NGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--RYRQFHQLG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-------PMRAESGPIGGDLSHEFIV 212
             +F L           + +   R +  LG+              ++     D    ++ 
Sbjct: 120 VEAFGLQGPDIDAE---LILLTARWWRALGIAEHVNLELNSIGSLDARANYRDALVAYLE 176

Query: 213 LADTGETQVFCSKDFM------DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  +    + +       D   P      +D  +L   ++  +  + A      E 
Sbjct: 177 QHKEKLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLEA 236

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKDHYVQMG 315
              +     +   RG++     +F       G++ ++     + G      G+       
Sbjct: 237 AGIAY-TVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV-- 293

Query: 316 SYGIGAMRVVAAV----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            + +G  R+V  V    +E + D              +  I + A     + A   +  R
Sbjct: 294 GFAMGLERLVLLVQAVNLEFNAD-------------PVVDIYLVASGADTQSAAMTLAER 340

Query: 372 LSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEI 418
           L             E  G +             FA AD  G  + +++G   V+D  V +
Sbjct: 341 L-----------RDENPGVKLMTNHGGGNFKKQFARADKWGARVALVLGESEVADGTVVV 389

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           K   +G +  ++ + V  +     
Sbjct: 390 KDLRSGEQTAVAQDSVTAHLRTLL 413


>gi|304390915|ref|ZP_07372867.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656296|ref|ZP_07909187.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304325798|gb|EFL93044.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315493298|gb|EFU82898.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 461

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 145/445 (32%), Gaps = 60/445 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+         R+    + +    +    +W  SG   ++     E L
Sbjct: 32  WDYGPLGVELKENIKKAWWNYMVRSREDVVGLDSSVILPPKVWDASGHLKAFTDPLIECL 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R  +  +     E+   +       S  ++P     ++ K+  E R   G++++  
Sbjct: 92  SCHKRLREDDLQEEYAEKHGVE--NPDDVSMDDVPCPNCGVKGKW-TEPRAFSGLLKTYL 148

Query: 155 FLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFI 211
             + D      L PE ++  +            R   G+         G IG    +E  
Sbjct: 149 GPVDDESGLHFLRPETAQGIFINFANVMTTARKRPPFGI---------GQIGKSFRNEIT 199

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T+ F   +   F  P  + ++      +             +    E   +  
Sbjct: 200 PGNFIFRTREFEQMELEFFVEPGTDEEWHQYWIDHRFEWYTDLGIKPENLRLYEHPKE-- 257

Query: 272 PENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT--------FKGADGKDH 310
            +    S R +++ + F F              T Y L +           +  A+ K  
Sbjct: 258 -KLSHYSKRTVDIEYAFGFENSKWGELEGIANRTDYDLGVHMKASGQKLDYYDQANDKRW 316

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAH 357
              +     G  R + A +  ++                 +     ++P K++++ +   
Sbjct: 317 VPYVIEPSAGLTRSLMAFLIEAYTEDEAPNTKGGVDKRTVLRLDPRLSPVKVAVLPLSRK 376

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   +    I A L K   +V +DD G  +G ++   D +G P  V V    + D  V 
Sbjct: 377 DE-LPEIAHNIAAELRKHW-NVEYDDAGA-VGRRYRRQDEIGTPYCVTVDFDSLEDQAVT 433

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           ++ R T  +E +  + ++ Y   R 
Sbjct: 434 VRERDTMTQERIGRDNLLAYLRDRL 458


>gi|150396386|ref|YP_001326853.1| seryl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166223291|sp|A6U8N8|SYS_SINMW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|150027901|gb|ABR60018.1| seryl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 427

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 22/245 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQN- 62
           P     P +       L L   M  + +    G    +  GQ A     +   + +    
Sbjct: 132 PTWNHKPLEHFEIGEALGL---MDFEGAARIAGSRFTILKGQLARLERALGQFMLDLHTG 188

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G IE+  P L   D    +G+   +  ++ R  D         PT E  +T++ R  I
Sbjct: 189 EHGYIEVQPPLLVRDDAMYGTGQLPKFTDDLFRTTD----GRWLIPTAEVPLTNMVREQI 244

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                LP  F  +   FR E     R   G++R  +F   +  S     E +   + +M 
Sbjct: 245 LDGEKLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFNKVELVSI-TDAESALDEHERMT 303

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                +  RLGL    M   +G +G         E  +       ++       DF    
Sbjct: 304 ACAEEVLKRLGLHYRVMTLCTGDMGFSARKTYDLEVWLPGQDAYREISSCSVCGDFQGRR 363

Query: 235 ENTDF 239
            N  +
Sbjct: 364 MNARY 368


>gi|300691805|ref|YP_003752800.1| histidyl-tRNA synthetase (histidine--tRNA ligase) [Ralstonia
           solanacearum PSI07]
 gi|299078865|emb|CBJ51526.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) [Ralstonia
           solanacearum PSI07]
          Length = 432

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 130/439 (29%), Gaps = 60/439 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 8   KGMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMY 67

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 68  SFTDSLNGEQLTLRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 123

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----------GPIG 203
           +F      +              M     R++  LGL  + +   S              
Sbjct: 124 QFHQVGVEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQAEEREAHRVDL 180

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F  + D  E             + ++N    ++ +    +  +    +      
Sbjct: 181 IKYLEGFQDILD--EDGKRRLYTNPLRVLDTKNPALQEMAASAPKLIDYLGDESRKHFEG 238

Query: 264 NEKLFDSLPENKR---VSARGIEV-------GHIFYFGTKYSLP----MSATFKGADGKD 309
            + L  +            RG++              G + ++          +   GK 
Sbjct: 239 VQTLLKANNIPYTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKP 298

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEK 367
                  + +G  R++  + E             +AP      +  +   DQ    A   
Sbjct: 299 APA--CGWAMGVERIIELLREEH-----------LAPEPQGCDVYIVHQGDQAQMQALVA 345

Query: 368 IYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
              RL   G DV      +       SQF  AD  G    VI+G   V+    ++K  R 
Sbjct: 346 -AERLRDAGLDVILHCSPEGRNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQVKPLRG 404

Query: 423 T---GIREDMSLEEVINYA 438
                 ++ +  +++++  
Sbjct: 405 DPNADAQQTVPSDQLVDRL 423


>gi|283477573|emb|CAY73489.1| hisS [Erwinia pyrifoliae DSM 12163]
          Length = 441

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 137/434 (31%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V  I+++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 22  QAIRGMNDYLPAETAVWQRVEQILKQVLSSYGFSEIRMPIVEQTPLFKRAIGEVTDVVEK 81

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 82  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 137

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +R E   IG   +    
Sbjct: 138 YRQFHQIGAEVFGLQGPDIDAELIMM---TARWWKALGIAD-HVRLELNSIGSLEARANY 193

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A       F  +         +   + + + +              +    + L D  
Sbjct: 194 RHALVA----FLEQHVEVLDEDCKRRMYSNPLRMLDSKNPDIQALLNDAPTLGDYLDDES 249

Query: 272 PENKRVSARGIEVGHIFY-------FGTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
            E+     R ++   I Y        G   Y+  +      + G +      G Y     
Sbjct: 250 REHFAGLCRQLDAAGIAYRVNQRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVE 309

Query: 323 RVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           ++      +     G+               P ++  + + A  Q  + A   +  +L  
Sbjct: 310 QLGGRATPAVGFAMGLERLVLLVQAVNPEFEPTRVVDVYVIASGQGVQSAALLLAEQLRD 369

Query: 375 VGCDVFWDDMGEQIG-----SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
              ++         G      QFA AD  G  + +++G   V++ ++  K    G ++ +
Sbjct: 370 ALPELKLMS---NFGGGNFKKQFARADKWGARIALVLGEDEVANGQLVFKDLRNGEQQTL 426

Query: 430 SLEEVINYASHRFS 443
           +  +     +    
Sbjct: 427 AQRDAATTLAALLQ 440


>gi|259907719|ref|YP_002648075.1| histidyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224963341|emb|CAX54826.1| Histidyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
          Length = 425

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 137/434 (31%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V  I+++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETAVWQRVEQILKQVLSSYGFSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +R E   IG   +    
Sbjct: 122 YRQFHQIGAEVFGLQGPDIDAELIMM---TARWWKALGIAD-HVRLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A       F  +         +   + + + +              +    + L D  
Sbjct: 178 RHALVA----FLEQHVEVLDEDCKRRMYSNPLRMLDSKNPDIQALLNDAPTLGDYLDDES 233

Query: 272 PENKRVSARGIEVGHIFY-------FGTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
            E+     R ++   I Y        G   Y+  +      + G +      G Y     
Sbjct: 234 REHFAGLCRQLDAAGIAYRVNQRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVE 293

Query: 323 RVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           ++      +     G+               P ++  + + A  Q  + A   +  +L  
Sbjct: 294 QLGGRATPAVGFAMGLERLVLLVQAVNPEFEPTRVVDVYVIASGQGVQSAALLLAEQLRD 353

Query: 375 VGCDVFWDDMGEQIG-----SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
              ++         G      QFA AD  G  + +++G   V++ ++  K    G ++ +
Sbjct: 354 ALPELKLMS---NFGGGNFKKQFARADKWGARIALVLGEDEVANGQLVFKDLRNGEQQTL 410

Query: 430 SLEEVINYASHRFS 443
           +  +     +    
Sbjct: 411 AQRDAATTLAALLQ 424


>gi|222153889|ref|YP_002563066.1| histidyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254782349|sp|B9DW81|SYH_STRU0 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222114702|emb|CAR43804.1| histidyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 425

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 132/438 (30%), Gaps = 65/438 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGEAAKWQYLENVARETFKKYHYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS +++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSFVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      S      M      +F  LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGSANPASDVETIAM---ASHLFETLGIKDMTLHLNSLGNPSSR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPMREQLSKDSQRRLDENPLRVLDSKEVEDKVAVENAPSILDYLDEESK 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGAD 306
                               +          RG++     IF           A  +G+D
Sbjct: 235 AHFEAVQEML-------TTLNIPFVIDTNMVRGLDYYNHTIF--------EFMAKVEGSD 279

Query: 307 -----GKDHYVQMGSYGIGAMRVVAAVIESSHDG-----KGIIWPDSVAPFKISLINIKA 356
                G  +   +  +           +           +GI  P    P  + L  +  
Sbjct: 280 LTICAGGRYDGLVSYFDGPETPGFGFGLGLERLLLILEKQGITLPIEE-PMDVYLAVLG- 337

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +        +   + K G     D +G +I +QF  AD       + +G   V   KV
Sbjct: 338 --EAANSKALALVQAIRKQGFTAERDYLGRKIKAQFKSADSFNAKTIITLGESEVETGKV 395

Query: 417 EIKHRLTGIREDMSLEEV 434
            IK+  T    ++SLEE+
Sbjct: 396 IIKNNQTREEMEVSLEEI 413


>gi|8671766|gb|AAF78372.1|AC069551_5 T10O22.10 [Arabidopsis thaliana]
          Length = 270

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F+   ++ L  SA  +     +  V +    + ++  + A++   + GK   W   ++P 
Sbjct: 124 FHLRDRFKLEYSA--ENETMIERSVLIHRAVLSSVERLFAILLEQYKGKFPFW---LSPR 178

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  + ++    +  R   +K+  ++ + G  V  D     +  +   A +  +   ++VG
Sbjct: 179 QAIVCSV---SEDYRSYADKVRDQIHEAGYYVDVDTTDRNVSDKVQEAQVAHYNYILVVG 235

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     +V +  R     E MS+E + +    + +N
Sbjct: 236 DEEARTGQVTVWLRD----EMMSIETLSDEFKLKTAN 268


>gi|328943493|ref|ZP_08240958.1| serine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327491462|gb|EGF23236.1| serine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 427

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 73/222 (32%), Gaps = 13/222 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    +     +  N  G  E   P L + D    +G+   + +++  ++ 
Sbjct: 165 FYVLGGYGAQMERALINFFIDMHNEAGFKEWWPPVLTNYDSLFGTGQLPKFDEDLFHVS- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E ++T++ R  +     LP  +      FR+E     R   G++R  E
Sbjct: 224 ---NDLYLIPTAEVMLTNLHRDEVLDASQLPLKYTAFTPCFREEAGSAGRDTRGIIRVHE 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE S +    M     +    LGL    +   +G IG         E 
Sbjct: 281 FDKVEMVKF-AKPEDSMNQLESMVAEAEKCLQVLGLAYRVVSLCTGDIGFSACKCYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            + +     ++    +  DF     N  + D           
Sbjct: 340 WLPSYNNYKEISSCSNCWDFQARRANIKYRDPSEFKGTRYVH 381


>gi|253988868|ref|YP_003040224.1| histidyl-tRNA synthetase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780318|emb|CAQ83479.1| histidyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 425

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 127/444 (28%), Gaps = 60/444 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+  P ++   L+  + G   D   K
Sbjct: 6   QALRGMNDYLPADTAIWQRIENTLKRVLAGYGYSEIRTPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P +          H   Y      +Y I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPENTAGCVRAGIEHGLLYNQEQRVWY-IGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +  E   IG        
Sbjct: 122 YRQFYQLGAEVFGLQGPDIDAELILM---TARWWRELGISE-HVTLELNSIGS-----LE 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E  V   +   D                    +         +        D+ 
Sbjct: 173 ARASYREALVAFLEQHKDKLDEDCKRRMYSNPLRVLDSKNPEVQQLLNNAPELFDYLDAE 232

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------------------------- 306
            +    S   +       +     L     +                             
Sbjct: 233 SKEHFNSLCALLDATGIKYRINQRLVRGLDYYNRTVFEWVTTALGAQGTVCAGGRYDGLV 292

Query: 307 ----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----HD 358
               G+        + +G  R+V  V E +        P  +A   ++ + + +      
Sbjct: 293 EQLGGRSTPAV--GFAMGMERLVLLVQEIN--------PAFMAELSVADVYLASFGEGSQ 342

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q      E++   L +    +  +  G     Q   AD  G  + +I+G   +   +V I
Sbjct: 343 QAALILAEQVRDMLPQ--LRLMMNHGGGNFKKQLGRADKHGAKIALILGEDEIRSGQVAI 400

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           K   TG ++ +S  E+    +   
Sbjct: 401 KDLRTGEQQTLSQGEIAARLAELL 424


>gi|224368220|ref|YP_002602383.1| SerS [Desulfobacterium autotrophicum HRM2]
 gi|259511665|sp|C0QLD3|SYS_DESAH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|223690936|gb|ACN14219.1| SerS [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +L  G K    +   + +   N  G  E   P + + +  + +G+   + +++ ++   
Sbjct: 164 LYLGSGAKLERALINFMLDLHTNEHGYTETLPPFIVNRESLLGTGQLPKFEEDLFKI--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
             +     PT E  MT+I+R  + +  NLP  F      FR E     +   G++R  +F
Sbjct: 221 EGQEYYLIPTSEVPMTNIYRDEVLNEENLPIKFTAYTPCFRSEAGSYGKDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   +  TPE S      +  +   +  RLGL    +   SG +G   +     E  
Sbjct: 281 NKVELVKY-TTPETSYQELESLLANAETVLKRLGLPYQVVTLCSGDLGFSATRTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           +       ++    +   F     N  F
Sbjct: 340 MPGQDKYREISSCSNCEAFQARRANIKF 367


>gi|58337235|ref|YP_193820.1| histidyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227903819|ref|ZP_04021624.1| histidyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|75507609|sp|Q5FKI5|SYH_LACAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|58254552|gb|AAV42789.1| histidyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227868706|gb|EEJ76127.1| histidyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 428

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 140/441 (31%), Gaps = 68/441 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPDQSSSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSSNPLADVQTIMMG---HDLLAELGVKNYQLHINTLGNEQVRKDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+  +LS +          ++  SKD  D     +     + +  ++    
Sbjct: 178 HDALVNYFTPVKDELSEDSQRRLRDNPLRILDSKDERDKKFLPDAPKIREFLDDDTKNNF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +          +  + D            + E         E       G +Y      
Sbjct: 238 ESILKMLDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVA-------AVIESSHDGKGIIWPDSVAPFKISLIN 353
             +  +G         +GIG  R++        A+ ES+                  + N
Sbjct: 294 LVEEFNGPATPAV--GFGIGEERLMLVLEKQNPALFESNSIDFF-------------IAN 338

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +       +I   L K G +  +D   +++ +QF  AD       + +G K + +
Sbjct: 339 IG---EGTAQKAIEITRSLRKQGFEADFDVNQKKLKAQFKKADRDHAKYVITLGEKELEN 395

Query: 414 SKVEIKHRLTGIREDMSLEEV 434
             + IK    G   D+SLE++
Sbjct: 396 GVLNIKRLSDGKTIDLSLEDI 416


>gi|20807682|ref|NP_622853.1| histidyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|32130121|sp|Q8RAI8|SYH_THETN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|20516230|gb|AAM24457.1| Histidyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 417

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 141/431 (32%), Gaps = 35/431 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ +  +G    LP        V  ++RE     G  E+  P  +  +L++       D 
Sbjct: 1   MLTKAPRGTKDVLPSESYKWQYVENLMREICEFYGYKEIRTPGFEHTELFLRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR+ +++             F  H       P   Y I   +R E +P+ G
Sbjct: 61  VRKEMYTFNDRSGRSITLKAEGTSPAVRAFIEHGLYAETQPTKLYYITPVYRYE-KPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESGPIGGD 205
             R RE        F      +      + ++ L+      L+                 
Sbjct: 120 --RLREHHQFGVEIFGAKSASADAEVISIAMTLLKKLGLNNLELRINSVGCPVCRKNYNK 177

Query: 206 LSHEF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           +  EF    L +  +      +      +  +      +     ++  +           
Sbjct: 178 VLKEFLKEHLDELCDDCKVRYEVNPLRVLDCKVESCRRVTGEAPLITDYLCDDCRNHFEE 237

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSAT--------FKG---ADGKD 309
            +K  D++  +  V  R I  G  +Y  T +   S  + A         + G     G  
Sbjct: 238 LKKYLDAMGYDYIVDPR-IVRGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G +G+G  R++  +     +  GI  P    P  + +  I       +     + 
Sbjct: 297 SMPGVG-FGMGIERLLLTL-----EQNGIEIPKPEGP-DLFIAYIG---DEAKLFTFTLA 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G  V  D M   + +Q   A+ L     V++G + +   KV++K+  TG   ++
Sbjct: 347 NKLRFNGLKVEIDHMERSLKAQMKYANKLNAKFAVVIGEEELESKKVKLKNMATGEETEI 406

Query: 430 SLEEVINYASH 440
            ++E+     +
Sbjct: 407 LIDEIEKAIKN 417


>gi|294812531|ref|ZP_06771174.1| Glycyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326441016|ref|ZP_08215750.1| glycyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294325130|gb|EFG06773.1| Glycyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 461

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 145/448 (32%), Gaps = 67/448 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + ++++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGIDSSVILASEVWEASGHVATFTDPLTECT 92

Query: 98  DRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
             + +         +EE      R+      +L       +  F D  +   G++ +   
Sbjct: 93  SCHKRYRADHLIEAYEEKHNG--RAPENGLADLNCPNCGNKGTFTD-PKQFSGLLSTHLG 149

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL----KSIPMRAESGPIGGDLSHEF 210
                     L PE ++            IF   GL               +G    +E 
Sbjct: 150 PTADSGSVAYLRPETAQ-----------GIFTNFGLVQNTSRRKPPFGIAQMGKSFRNEI 198

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P E     D       ++Q    Y           +  
Sbjct: 199 TPGNFIFRTREFEQMEMEFFVKPGE-----DEHWQQYWMDQRWNWYTGLGMREENMRWYE 253

Query: 271 LPENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------G 307
            P+ K    S R  ++ + F FG             T Y L   +   G D        G
Sbjct: 254 HPKEKLSHYSKRTADIEYRFQFGGNEWGELEGVANRTDYDLGAHSKASGQDLSYFDQEAG 313

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINI 354
           +     +     G  R + A +  +++                +     +AP K++++ +
Sbjct: 314 ERWTPYVIEPAAGVGRAMLAFMLDAYNEDEAPNAKGVMEKRTVMRLDPRLAPVKVAVLPL 373

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             + Q      + + A L +   ++ +DD G  IG ++   D +G P  V V    + D+
Sbjct: 374 SRNAQ-LSPKAKGLAADLRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDN 430

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V ++ R T  +E +SL+++  Y   R 
Sbjct: 431 AVTVRERDTMQQERVSLDQIQAYLGARL 458


>gi|313201446|ref|YP_004040104.1| histidyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312440762|gb|ADQ84868.1| histidyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 418

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 126/439 (28%), Gaps = 56/439 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG Y  LP        +    R+   + G   + +P ++  DL++ S     D   
Sbjct: 5   FQSIKGFYDILPEQTALWQKLEDTARQVLGQYGYRNIRMPIVEPTDLFIRSVGEHTDIVE 64

Query: 91  KEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM    D  N   +   P            H  +Y N P   + +   FR E       
Sbjct: 65  KEMYSWVDALNGDKLTLRPEGTAGCVRAVVEHSLTY-NGPQRLWYMGPMFRHE---NVQK 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F      +F               +   R++  LGL  + ++  +  IG      
Sbjct: 121 GRQRQFHQIGVEAFGYAQPEVDAE---QIMLLARLWRALGLTDVELQLNT--IGDAA--- 172

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH------ 263
               A+  +  +   +   D                    +                   
Sbjct: 173 --ERAEYRQVLIAYFEQHADLLDEDAKRRLHTNPLRILDSKNPRMQAMIEGAPRLLDTLG 230

Query: 264 --NEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMS--ATFKGADGK--------- 308
             +   FD++    + +     +      G  Y          T  G+ G          
Sbjct: 231 GESRAHFDAVCALLKAANIPFVLNTRLVRGLDYYNRTVFEWVTTRLGSQGTIAGGGRYDT 290

Query: 309 ------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                         +GIG  RV   ++   +   GI   ++       L+N+    +   
Sbjct: 291 LVERLGGDATPACGFGIGLERVF--LLMQEY---GI---EATQGLDGYLVNLG---EQAE 339

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HR 421
               ++  +L   G  V     G    SQ   AD  G    +I+G +     ++ +K   
Sbjct: 340 RLAPQVAEQLRDAGISVALHTGGGSFKSQMKKADRSGARFALILGDEEAQAGQITLKPML 399

Query: 422 LTGIREDMSLEEVINYASH 440
             G ++ + L + I +   
Sbjct: 400 GGGEQQRLDLLQAIQHLKE 418


>gi|253689382|ref|YP_003018572.1| histidyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259511952|sp|C6DBH3|SYH_PECCP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|251755960|gb|ACT14036.1| histidyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 424

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 135/440 (30%), Gaps = 53/440 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRAGIEHGILYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M   + R+   LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAELILMTARWWRV---LGIAD-HVKLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E  V   +   D                    +                  D  
Sbjct: 173 ARARYREALVAFLEQHKDQLDEDCLRRMYTNPLRVLDTKNPQIQVLLNDAPVLTDYLDDE 232

Query: 272 PENKR------------------VSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
                                     RG++     +F       G + ++     + G  
Sbjct: 233 SREHFEALGELLTQSGIPYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMV 292

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQV-CR 362
                H      + +G  R+V  V   + D K         P   + LI+  A  QV   
Sbjct: 293 EQLGGHATPAVGFAMGLERLVLLVQSVNPDFKA-------QPGVDVYLISSGAGTQVAAM 345

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+   L ++     +     +   QFA AD  G  + +++G   V+  +V +K+  
Sbjct: 346 QLAEKLRDALPQLKLMTNYGGGNFK--KQFARADKWGARVALVLGENEVAAGQVVVKNLS 403

Query: 423 TGIREDMSLEEVINYASHRF 442
            G ++ ++  +V +  +   
Sbjct: 404 NGEQDTLAQADVASRLATLL 423


>gi|24113843|ref|NP_708353.1| histidyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30063906|ref|NP_838077.1| histidyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|39932171|sp|Q83K44|SYH_SHIFL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|24052934|gb|AAN44060.1| histidine tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30042161|gb|AAP17887.1| histidine tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|281601916|gb|ADA74900.1| Histidyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|313651000|gb|EFS15400.1| histidyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|332754201|gb|EGJ84569.1| histidyl-tRNA synthetase [Shigella flexneri 4343-70]
 gi|332755564|gb|EGJ85928.1| histidyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332756364|gb|EGJ86715.1| histidyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|332766347|gb|EGJ96557.1| histidyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333000702|gb|EGK20278.1| histidyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333001703|gb|EGK21269.1| histidyl-tRNA synthetase [Shigella flexneri K-218]
 gi|333002309|gb|EGK21873.1| histidyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333016132|gb|EGK35464.1| histidyl-tRNA synthetase [Shigella flexneri K-227]
 gi|333016432|gb|EGK35763.1| histidyl-tRNA synthetase [Shigella flexneri K-304]
          Length = 424

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 139/446 (31%), Gaps = 65/446 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVS----YLRIFHRLGLK-SIPMRAESGPIGGDL 206
            R+F       F L           M  +     L IF  + L+ +     E+     D 
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAELI-MLTARWWRALGIFEHVTLELNSIGSLEARANYRDA 180

Query: 207 SHEFIVLADTGETQVFCSKDFM------DFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
              F+        +    + +       D   P      +D  +L   +++ +  + A  
Sbjct: 181 LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGL 240

Query: 261 DVHNEKLFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKD 309
               E    +     +   RG++     +F       G++ ++     + G      G+ 
Sbjct: 241 CKLLESAGIAY-TVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRA 299

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R+V  V   +                +  I + A     + A   + 
Sbjct: 300 TPAV--GFAMGLERLVLLVQAVN---------PEFKADPVVDIYLVASGADTQSAAMALA 348

Query: 370 ARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKV 416
            RL             E +G +             FA AD  G  + V++G   V++   
Sbjct: 349 ERL-----------RDELLGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTA 397

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            +K   +G +  ++ + V  +     
Sbjct: 398 VVKDLRSGEQTAVAQDSVAAHLRTLL 423


>gi|11465814|ref|NP_053958.1| histidine-tRNA synthetase [Porphyra purpurea]
 gi|1711633|sp|P51348|SYH_PORPU RecName: Full=Histidyl-tRNA synthetase, chloroplastic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1276814|gb|AAC08234.1| histidine tRNA synthetase [Porphyra purpurea]
          Length = 430

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 131/433 (30%), Gaps = 32/433 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP  Q     ++  +          E+  P  +++DL+        D   K
Sbjct: 5   QAIRGTKDILPDEQLYWQFIHEKVASLLKYANYKEIKTPIFENSDLYDRGIGENTDIVNK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM R  DR+++ +   P     +   F  +    +N     +     FR E RP+ G  R
Sbjct: 65  EMYRFNDRSNRDITLRPEGTAGVVRAFIENRMDVQNRLQKLWYSGPMFRYE-RPQSG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F          +   +      +    + IF+ L +  + +   S     D +H   
Sbjct: 122 QRQFHQLGIEFIGSSDARADAE---IIHLAMNIFNDLSVNDLQLDINSIGKAEDRNHYQA 178

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLFDS 270
            L +  E             + S      D  +     +   +   +    + +EK FD 
Sbjct: 179 KLQEYLEQYYDDLDTDSQNRLSSNPIRILDTKNKYTQTILNDSPRISDFLSLESEKHFDD 238

Query: 271 LPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYV-------QMGSYGIGA 321
           + +   +     ++      G  Y            + G+D           +   G   
Sbjct: 239 VCDYLTLLNVPYKINTQLVRGLDYYNDTAFEIKILKSQGQDTLCGGGRYDSLIHQLGGNK 298

Query: 322 MRVVAAVIESSH----DGKGIIWPDSVAPFKISL-INIKAHDQVCRDACEKIYARLSKVG 376
              V   I            I+ P       +S+   I +     R     I   L    
Sbjct: 299 TPAVGCAIGLERLLLVAKDNILLP------HMSIDCYIVSKGIKARKIGIIITQFLRNQL 352

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV-- 434
                D      G Q   A        +I+G   +    + IK   T  +E+MS+ E   
Sbjct: 353 VKTELDISSSNFGKQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKN 412

Query: 435 -INYASHRFSNNR 446
            I+Y   + + N+
Sbjct: 413 KISYLKKKIAFNK 425


>gi|298345360|ref|YP_003718047.1| glycine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|315655778|ref|ZP_07908676.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii ATCC
           51333]
 gi|298235421|gb|ADI66553.1| glycine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|315489842|gb|EFU79469.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii ATCC
           51333]
          Length = 457

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 145/445 (32%), Gaps = 60/445 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+         R+    + +    +    +W  SG   ++     E L
Sbjct: 28  WDYGPLGVELKENIKKAWWNYMVRSREDVVGLDSSVILPPKVWDASGHLKAFTDPLIECL 87

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R  +  +     E+   +       S  ++P     ++ K+  E R   G++++  
Sbjct: 88  SCHKRLREDDLQEEYAEKHGVE--NPDDVSMDDVPCPNCGVKGKW-TEPRAFSGLLKTYL 144

Query: 155 FLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFI 211
             + D      L PE ++  +            R   G+         G IG    +E  
Sbjct: 145 GPVDDESGLHFLRPETAQGIFINFANVMTTARKRPPFGI---------GQIGKSFRNEIT 195

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T+ F   +   F  P  + ++      +             +    E   +  
Sbjct: 196 PGNFIFRTREFEQMELEFFVEPGTDEEWHQYWIDHRFEWYTDLGIKPENLRLYEHPKE-- 253

Query: 272 PENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT--------FKGADGKDH 310
            +    S R +++ + F F              T Y L +           +  A+ K  
Sbjct: 254 -KLSHYSKRTVDIEYAFGFENSKWGELEGIANRTDYDLGVHMKASGQKLDYYDQANDKRW 312

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAH 357
              +     G  R + A +  ++                 +     ++P K++++ +   
Sbjct: 313 VPYVIEPSAGLTRSLMAFLIEAYTEDEAPNTKGGVDKRTVLRLDPRLSPVKVAVLPLSRK 372

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   +    I A L K   +V +DD G  +G ++   D +G P  V V    + D  V 
Sbjct: 373 DE-LPEIAHNIAAELRKHW-NVEYDDAGA-VGRRYRRQDEIGTPYCVTVDFDSLEDQAVT 429

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           ++ R T  +E +  + ++ Y   R 
Sbjct: 430 VRERDTMTQERIGRDNLLAYLRDRL 454


>gi|284047518|ref|YP_003397857.1| seryl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283951739|gb|ADB46542.1| seryl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 426

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y +   G +    V   + ++   + G +E+  P + +      +G+   + ++M ++ 
Sbjct: 162 FYYYKGAGARLERAVYNFMLDQHTRKDGYMEVIPPYIVNTASMTGTGQLPKFHEDMYKV- 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               + M   PT E  +T+ +R  I +  +LP     +   FR E     R   G++R  
Sbjct: 221 --EGQDMYLIPTAEVPLTNYYRGEILNGDDLPIYLTAMTPCFRAEAGSAGRDTRGLIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F   PE S     K+  +   I   L L    +   +G +G   +     E
Sbjct: 279 QFHKVEMVKF-CKPETSYDELEKLVGNAEDILKALKLPYHVVCLCTGDLGFSAAKCYDVE 337

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                     ++    +  DF     N  F
Sbjct: 338 VWFPEQNKYREISSCSNTEDFQARRANIRF 367


>gi|110003912|emb|CAK98252.1| seryl-trna synthetase protein [Spiroplasma citri]
          Length = 422

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 12/219 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  +G K    +   + +E  + G IE+  P L    +   +G    + +++  +  
Sbjct: 164 FVVYKGMGAKLERALMNFMLDEHAKRGYIEIEPPILVQPQIMYGTGNLPKFKEDLYYIEK 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE----LRPRFGVMRSRE 154
            N   +   PT E  +T+++R  I     LP         FR E     R   G++R  +
Sbjct: 224 DN---LYLIPTSEVPVTNLYREEILEKDQLPIYHTAYTPCFRQESGSAGRDTKGIIRLHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F  T E S     KM +    I   L +    +   SG +G   +     E 
Sbjct: 281 FKKVEMVKF-TTEEASFEELEKMVLDAENILQLLEIPYRVILLCSGDMGFSSTKTYDVEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            +       ++    + +DF        + D   +  + 
Sbjct: 340 WMPGQNKYREISSCSNCLDFQARRMKLRYRDDNEIKYVH 378


>gi|314966850|gb|EFT10949.1| glycyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
 gi|314981192|gb|EFT25286.1| glycyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315091764|gb|EFT63740.1| glycyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
 gi|315093229|gb|EFT65205.1| glycyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|327327676|gb|EGE69452.1| glycine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 506

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 123/398 (30%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 166 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 219

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 220 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVE-------------- 265

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                P   +  H++ + A T             +     N D 
Sbjct: 266 ---------------------PGTDEEWHQYWIDARTA-----------WYTDLGINPDN 293

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 294 LRHYEHPKEKLSHYSKRTVDVEYKFGFTGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 351

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 352 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 408

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 409 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 465

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V ++ R T  ++ +S+++V  Y   R 
Sbjct: 466 TVDFDSLEDDAVTVRERDTMAQQRVSIDKVEEYLGGRL 503


>gi|118466054|ref|YP_882642.1| histidyl-tRNA synthetase [Mycobacterium avium 104]
 gi|254775907|ref|ZP_05217423.1| histidyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|118167341|gb|ABK68238.1| histidyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 420

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 137/435 (31%), Gaps = 43/435 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V + + +     G  ++ +P  +   L+        D   
Sbjct: 4   FSAPKGVPDYVPPDSAQFVAVRSGLLDAARGAGYGDIELPIFEDTALFARGVGESTDVVS 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 64  KEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGTLPVKLCYAGPFFRYE-RPQAG-- 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 121 RYRQLQQVGVEAIGVDDPALDAEVIAVADA---GFRSLGLDGFRLEITSLGDDSCRPQYR 177

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  +F+   D  E     ++      +  +  +   + +   ++    +  A       
Sbjct: 178 ELLQDFLFGLDLDEETRRRARLNPLRVLDDKRPEVRAMTADAPVLLDHLSDAAKQHFDTV 237

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     ++ R             E  H    G +  +     + G         
Sbjct: 238 LAHLDALGVPYVINPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRQLGGQD 296

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    +G+G  R + A+  E    G       S A   +  + +    ++       + A
Sbjct: 297 LSGIGFGLGVDRTLLALRAEGKSVG-------SAARCDVFGVPLSDQAKLRLAV---LAA 346

Query: 371 RLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            L   G  V   +   G + G+    AD  G  + +++G + +    V +K   TG +  
Sbjct: 347 GLRAAGVRVDMAYGARGLK-GAM-RAADRSGARIALVLGDRDIDAGTVGVKDLQTGSQVS 404

Query: 429 MSLEEVINYASHRFS 443
           + L+ V+     + S
Sbjct: 405 VELDSVVAEVLSQLS 419


>gi|90579364|ref|ZP_01235174.1| histidyl-tRNA synthetase [Vibrio angustum S14]
 gi|90440197|gb|EAS65378.1| histidyl-tRNA synthetase [Vibrio angustum S14]
          Length = 422

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 149/439 (33%), Gaps = 52/439 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +++  +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGTVKQVISAYGYNEVRMPIVESTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIQNGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG   +    
Sbjct: 122 YRQFHQVGVEVFGLNGPDIDAELIMM---TARLWRELGIHE-HVRLELNSIGSLEARAEY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N+   +I+     + ++  P +    
Sbjct: 178 RKALIAFLEQHLDVLDEDAKRRMYTNPLRVLDTKNSAIQEILVDAPKLSEYLDPESKEHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFYFGTKYSLPMSATFKGA----------D 306
               +L D+     +      RG++     +F + T+ SL    T  G            
Sbjct: 238 DGLCELLDAAGIKYQVNERLVRGLDYYNRTVFEWITE-SLGAQGTVCGGGRYDGLVEQLG 296

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRD 363
           GK        + +G  R+V  ++  + +   +          + +  + A +    V   
Sbjct: 297 GKATPSV--GFAMGLERLV--LLMEALEQDEVR-------RSVDVYVVTAGEGTLAVGMT 345

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   +S  G  V     G     QF  AD +G  + +++G   ++++ V +K    
Sbjct: 346 LAEKLRTEVS--GLRVMTHFGGGNFKKQFKRADNVGAAVALVLGENEIAENTVVVKDLHG 403

Query: 424 GIREDMSLEEVINYASHRF 442
           G +  M+ +EV    +   
Sbjct: 404 GEQTTMAQDEVAAKLAALI 422


>gi|229582573|ref|YP_002840972.1| Glycine--tRNA ligase [Sulfolobus islandicus Y.N.15.51]
 gi|228013289|gb|ACP49050.1| Glycine--tRNA ligase [Sulfolobus islandicus Y.N.15.51]
          Length = 473

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 83/465 (17%), Positives = 151/465 (32%), Gaps = 87/465 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK--- 91
            G   WLP G      +         +       M   T+    ++  SG   ++     
Sbjct: 31  SGFIDWLPPGAMLRQKIIDSWINFFIKKIPNVFLMDGSTILPLIVFEASGHLANFTDPVI 90

Query: 92  ------EMLRL-----------------ADRNDKAM-------------------IYGPT 109
                    R+                  D  ++ +                      P 
Sbjct: 91  KCPKCSNTYRVDHLLKETNGKLICPRDLTDLKEQEIKQKSLMLELTVGLTDEINAALRPE 150

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
             + +   F +       LPF   QI   +R+E+ PR    R REF+  +   F L    
Sbjct: 151 TAQNIYINFMNFKAIGLKLPFAIAQIGRSYRNEISPRGS--RLREFVQMEIEEFVLPSHL 208

Query: 170 SKHS-YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             H  Y+ +    L IF+    ++I M        G + +  +      E          
Sbjct: 209 DSHPLYDSVKEIRLPIFYEE--QTIEMELNEAVKKGLVPNVRLAFWIGRE----WQWLTN 262

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +  +P     F        +  +  A Y+  +      + D   E    + R        
Sbjct: 263 ELGLPGNKIRFR------VVPPEERAFYSKGTIDVEVNIEDDWVEIIGNAYR-------- 308

Query: 289 YFGTKYSLPMSATFKG----ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-------G 337
              T Y L + +   G     +G   +V   S+G+   R+  AV+  ++D          
Sbjct: 309 ---TDYDLTVHSKHSGANLSENGMIPHVVEPSFGLD--RIAMAVLLLNYDPSPSDRNWPL 363

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
              P  ++P ++ + +I   D+      EK+   L  +G   F      +I +Q+A AD 
Sbjct: 364 FRIPYKISPLEVGIASIHHSDEYIN-VAEKVDLTLRSLGYVTFKLFEKGKIEAQYAKADT 422

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           LG PL V V SK + ++ V I++R T  +  +++ E+     +  
Sbjct: 423 LGIPLVVTVDSKTLDENTVTIRNRDTKAQIRVNIREIGQAIKNLL 467


>gi|257468587|ref|ZP_05632681.1| seryl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062844|ref|ZP_07927329.1| seryl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313688520|gb|EFS25355.1| seryl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 423

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 14/222 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  +G +    +   + +      G  E   P L   ++   +G+   +  +M R  
Sbjct: 162 FVLYRGMGARVERALINFMLDMHTTEHGYTEHITPFLVKREICEGTGQLPKFEDDMYRTT 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     M    T E  MT+I R  I   + LP  +      FR E     +   G++R  
Sbjct: 222 D----DMFLISTSEITMTNIHRKEILDEKELPKYYTAYSPCFRREAGSYGKDVKGIIRVH 277

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +      T E S     KM V+   +  RL L    ++  +G +G   +     E
Sbjct: 278 QFNKVEMVKI-ATQESSYEELEKMVVNAEEVLQRLELPYRVIQLCTGDLGFSAAKTYDLE 336

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             + +     ++    +  DF        +    S  S    
Sbjct: 337 VWLPSQNKYREISSCSNCTDFQARRMGLKYRPNGSSKSEFCH 378


>gi|307719119|ref|YP_003874651.1| glycyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306532844|gb|ADN02378.1| glycyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 443

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/462 (15%), Positives = 144/462 (31%), Gaps = 70/462 (15%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G + Q S+   G+   + + PLG +  +N+      E    R   + +    L  
Sbjct: 12  LCKRRGFVFQSSEVYGGLSSAWDYGPLGVELKNNIERFWWNEMVRKRRNIVGLDAAILMH 71

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
             +W  SG  +++   ++   +   R     I             +      R     F 
Sbjct: 72  PKVWEASGHVENFHDPLVDCKECKARFRADQIDLSAPCPECGA--KDSFTEPRQFNLMFK 129

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                  DE                 +    L PE ++  Y            RL +   
Sbjct: 130 THLGPVEDE-----------------STVVYLRPETAQGIYVNYKNCLQS--SRLKVPFG 170

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             +     +G    +E +       T  F   +   F  PSE+  + D      +     
Sbjct: 171 IAQ-----VGKAFRNEIVTKNFIFRTCEFEQMEMQFFVHPSEDKKWFDYWKAERMEYYRK 225

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFK 303
                     ++   D L    +     +++ + F FG          T Y L   + F 
Sbjct: 226 MGVRPEKLRFHQHGPDELAHYAKE---AVDIQYEFPFGWRELEGVHNRTDYDLSRHSQFS 282

Query: 304 GAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAP 346
           G D         + +   +     G  R V  V+  ++D + +          +   +AP
Sbjct: 283 GKDLSYFDDETRERYIPYIIETSAGLTRSVLMVLSDAYDEEELENGEKRTVLRFHPLIAP 342

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
             +++  +   D       + +   L     + F+D+ G  IG ++   D +G P  + V
Sbjct: 343 ITVAVFPLMRRD-GLDTYAQNLEEELRDH-FNTFYDESGA-IGRRYRRQDEVGTPYCITV 399

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             + + D  V +++R +  +  +   E+++         R V
Sbjct: 400 DYQTLKDDTVTLRYRDSMEQVRIHRNEIVSAVQQAIREYRRV 441


>gi|308806117|ref|XP_003080370.1| putative glycyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058830|emb|CAL54537.1| putative glycyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 529

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 117/388 (30%), Gaps = 78/388 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-- 185
           LPF   QI   FR+E+ PR G++R REF   +   F          + ++    L +F  
Sbjct: 118 LPFAAAQIGQSFRNEIAPRAGLLRVREFTQAEIEHFVHPDHKEHPRFAEVANIQLNLFSQ 177

Query: 186 --------------------------HRLGLKSIPMRAESGPIGGD---------LSHEF 210
                                       LG            IG D         L HE 
Sbjct: 178 EAQLAAVKKPFLMTVGDAVSKGIIANETLGYFIARCHLFLMAIGIDSARLRFRQHLKHEM 237

Query: 211 -IVLADTGETQVFCSKDFMDFP---------IPSENTDFDDIISLNSIVEQWTAPYAATS 260
               AD  + ++ CS  +++           + + +      +      +          
Sbjct: 238 AHYAADCWDAEIQCSYGWIECVGLADRSAFDLNAHSEKSKVDLVAYERFDTPIQEEVLVM 297

Query: 261 DVHNEKLFDSLPENKRVSARGIEV---GHIFYFGTKYSLPMSATFKGADGKDH------- 310
             + + L  +  ++ +     ++       F      +   SA  K   G+         
Sbjct: 298 TPNKQILGKAFKKDAKPITEALQALGEAEAFALQEACAANSSAALKTDAGEFQVSADMFK 357

Query: 311 -------------YVQMGSYGIGAMRVVAAVIESSH-----DGKGII--WPDSVAPFKIS 350
                           +     G  R++  + E +      D +  +      VAP K +
Sbjct: 358 VEKVTKTLNGRNYTPSVIEPSFGIGRIMYCMFEHAFYIRPDDEQKTVLKLTPVVAPIKTT 417

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  +  +D    D   ++   L+  G     D     IG ++A  D LG P  V V  + 
Sbjct: 418 IFPL-VNDDKLNDIANQMNKTLTSNGISAKLDTTAVSIGKRYARTDELGVPFAVTVDHRS 476

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D  V ++ R +  +  + + EV    
Sbjct: 477 TTDGTVTVRERDSCDQVRVPMTEVAELL 504


>gi|166077786|gb|ABY80987.1| glutamyl-prolyl tRNA synthetase [Paramysis lacustris]
          Length = 145

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  +V   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTSPDKKQFVYQNSWGLT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDDERLALIKAAEQLQKELVEXDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|326563744|gb|EGE13995.1| seryl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326566764|gb|EGE16903.1| seryl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326567394|gb|EGE17509.1| seryl-tRNA synthetase [Moraxella catarrhalis BC1]
 gi|326569919|gb|EGE19969.1| seryl-tRNA synthetase [Moraxella catarrhalis BC8]
 gi|326571480|gb|EGE21495.1| seryl-tRNA synthetase [Moraxella catarrhalis BC7]
 gi|326575237|gb|EGE25165.1| seryl-tRNA synthetase [Moraxella catarrhalis CO72]
 gi|326576676|gb|EGE26583.1| seryl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 422

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 12/208 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G  EM VP + ++D    +G+   + +++ +L  R +K     PT
Sbjct: 174 RALVQFMLDTHTQKYGYTEMYVPYMVNSDSLQGTGQLPKFEEDLFKL--RGEKEYYLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+  R  I S ++LP         FR E     R   G++R  +F   +      
Sbjct: 232 SEVPLTNSVRDTILSPKDLPIKLTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMVQV-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             + S  +   M      +   L L    M   +G +G         E  + +     ++
Sbjct: 291 RADSSMQALEDMTAQAEYVLQALELPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNMYREI 350

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIV 249
               +  DF     +    D      + 
Sbjct: 351 SSCSNCGDFQARRMSARLKDGKHSELVH 378


>gi|296112762|ref|YP_003626700.1| seryl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295920456|gb|ADG60807.1| seryl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 443

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 12/208 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G  EM VP + ++D    +G+   + +++ +L  R +K     PT
Sbjct: 195 RALVQFMLDTHTQKYGYTEMYVPYMVNSDSLQGTGQLPKFEEDLFKL--RGEKEYYLIPT 252

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+  R  I S ++LP         FR E     R   G++R  +F   +      
Sbjct: 253 SEVPLTNSVRDTILSPKDLPIKLTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMVQV-T 311

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             + S  +   M      +   L L    M   +G +G         E  + +     ++
Sbjct: 312 RADSSMQALEDMTAQAEYVLQALELPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNMYREI 371

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIV 249
               +  DF     +    D      + 
Sbjct: 372 SSCSNCGDFQARRMSARLKDGKHSELVH 399


>gi|262305771|gb|ACY45478.1| glu- + pro-tRNA synthetase [Periplaneta americana]
          Length = 134

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      ++  + ++  YV   S+GI   R +  +I    D +
Sbjct: 15  SGRAIQGATSHFLGQNFSRMFEIVYEDPETQEKRYVYQNSWGIT-TRTIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHDQVCRDA-CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA F++ ++       +K  D+    A CE++   L+ VG  V  D       
Sbjct: 74  GLVLPPRVACFQVVIVPCGINAGMKDEDRKALIANCEELEQALNGVGIRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|146312649|ref|YP_001177723.1| histidyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166980047|sp|A4WD92|SYH_ENT38 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145319525|gb|ABP61672.1| histidyl-tRNA synthetase [Enterobacter sp. 638]
          Length = 424

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 137/437 (31%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFNQLGVEVFGLQGPDIDAE---LIMLTARWWRELGISQ-HVALELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     ++   K   D      +     + S N  V+       A  D  +E+  D  
Sbjct: 178 RDALVAFLELHKDKLDEDCQRRMYSNPLRVLDSKNQDVQALLNDAPALGDYLDEESRD-- 235

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYG-IGAMRVVAAVI 329
             +     + +E   I Y      L     +      +     +GS G + A      ++
Sbjct: 236 --HFAGLCKLLEAAGIAYT-VNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLV 292

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-----------D 378
           E            ++   ++ L+    + +   ++   IY  L   G             
Sbjct: 293 EQLGGRAAPAVGFAMGLERLVLLVQAVNPEFKAESVVDIY--LVASGADTQSAAMKFAER 350

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           V         G +             FA AD  G  + +++G   V+  +V +K   +G 
Sbjct: 351 V----RDALPGVKLMTNHGGGNFKKQFARADKWGASVALVLGESEVAAGEVVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTTVTQDGVAAHLRTLL 423


>gi|14601532|ref|NP_148072.1| glycyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|11387160|sp|Q9YBF8|SYG_AERPE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|5105327|dbj|BAA80640.1| glycyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 583

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R V   +E ++        + +P  +AP +  ++ +  +D+   
Sbjct: 430 GRRFVPHVVEPSFGTDRNVYVALEYAYREVEGRVVLAFPRDIAPVQAVVLPLVENDEKLV 489

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    +Y  L + G  V++DD G  IG ++A AD +G P  V +  + + D  V ++ R 
Sbjct: 490 ERARMVYETLVEAGFTVYYDDSG-SIGRRYARADEIGVPAAVTIDYQTLEDGTVTLRDRD 548

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +  +  +EV++      
Sbjct: 549 TWRQVRIGADEVVDKLRRFI 568



 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 98/335 (29%), Gaps = 79/335 (23%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREE---QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G Y W PLG      +    R      ++   +E+  P +    +++ SG  + +   +
Sbjct: 30  AGFYDWGPLGHLLKRRIIEKWRRYFVLMHQDHVVEIETPVIGPEKVYIASGHVEHFTDPI 89

Query: 94  LRLA----------------------------DRNDKAMIYGPTHE-------EVMTDIF 118
           +R                              DR  +                E    +F
Sbjct: 90  VRCTSCGRTFRADHLVEEALGINAEGLSVSELDRIIRERGLRCPVCQGELGRVETFNLLF 149

Query: 119 RSHIKSY---------------------------RNLPFTFYQIQLKFRDELRPRFGVMR 151
           R+ I  Y                             +P    Q+    R+E+ PR  ++R
Sbjct: 150 RTQIGPYEGSVGYLRPELAQGIFVAFKRVYEAMRSRIPLGIAQVGRVGRNEISPRQALVR 209

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF + +   F + PE    S           FHR+    +P+        G+   E  
Sbjct: 210 LREFTIMEMEYF-IDPEDQWGS--------CPFFHRMADSKLPILTYEAKRRGEEKPESF 260

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L +     V  S     +         D  +  +SI+ +   P       ++ + FD L
Sbjct: 261 KLEEAVNEGVVISPCLGYWMAVGMRFVEDLGVPSDSIMFEEKGPEERAH--YSSQTFDQL 318

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            +  R     +  GH +     Y L     + G D
Sbjct: 319 VKVSRWGWIEV-AGHSYR--GDYDLSRHMKYSGQD 350


>gi|292900175|ref|YP_003539544.1| histidyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291200023|emb|CBJ47148.1| histidyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
          Length = 425

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 147/422 (34%), Gaps = 41/422 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V  ++++  +  G  E+ VP ++   L++ + G   D   K
Sbjct: 6   QAIRGMNDYLPAETAVWQRVEQVLKQVLSSYGFSEIRVPIVEQTPLFLRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLSLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGG 204
           SR+F    A  F L           M     R +  LG+    +         ++     
Sbjct: 122 SRQFHQIGAEVFGLQGPDIDAELIMM---TARWWKALGIADHVVLELNSIGSLQARANYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D    F+        +    + + +    + S+N D   +++    +  +    +     
Sbjct: 179 DALVAFLEQHVEMLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPTLGDYLDDESREHFA 238

Query: 263 HNEKLFDSLP---ENKRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDH 310
              +  D+        +   RG++     +F       G + ++     + G       H
Sbjct: 239 GLCRHLDAAGIAYRVNQRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGGH 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                 + +G  R+V  V   +             P ++  + + A  Q  + A   +  
Sbjct: 299 ATPAVGFAMGLERLVLLVQAVN---------PEFEPTRVVDVYVIAAGQGVQSAALLLAE 349

Query: 371 RLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +L     ++    +  G     QFA AD  G  + +++G   V++ ++ IK   TG ++ 
Sbjct: 350 QLRDALPELKLMSNLGGGSFKKQFARADKWGARIALVIGEDEVANGQLVIKDLRTGEQQT 409

Query: 429 MS 430
           ++
Sbjct: 410 LA 411


>gi|269216691|ref|ZP_06160545.1| serine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129925|gb|EEZ61008.1| serine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 426

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 13/216 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P + +A     +G+   +  ++ +      + M
Sbjct: 170 LGARLERALINFMIDTHISRGYKEWWPPAMANATTLFGTGQLPKFEDDLFKT----REGM 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +    +LP  +      FR+E     R   G++R  +F   + 
Sbjct: 226 YLIPTAEVQLTNIHAQEVLDASDLPLKYCAFTPCFREEAGSAGRDTRGLIRVHQFDKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F  TPE   +    M      I   LGL    +   +G +G   +     E  + +  
Sbjct: 286 VKF-ATPEDGFNQLELMTADAENILKLLGLPHRVISLCTGDLGFSAAKTYDLEVWLPSYD 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           G  ++       DF     +  + D  S       +
Sbjct: 345 GYKEISSCSCCTDFQARRADIKYRDAASFKGTRYAY 380


>gi|206889416|ref|YP_002249587.1| histidyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|226737080|sp|B5YHK1|SYH_THEYD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|206741354|gb|ACI20411.1| histidyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 420

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 122/415 (29%), Gaps = 35/415 (8%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEMLRLADRNDKAMI 105
               ++    R+        E+  P +++A+L++ S   D+    KEM    D+  + + 
Sbjct: 18  YLWQHIEEHARKILENYNFQEIRTPIVENAELFLRSIGEDTDIVEKEMYVFQDKKGRKVA 77

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   +  H       P  FY I   FR E RP+ G  R R+F       F +
Sbjct: 78  LRPEGTASVVRAYIQHNFFNNPPPQKFYYIGPMFRYE-RPQKG--RFRQFHQIGVECFGV 134

Query: 166 TPEGSKHSYNKMFVSYLR-------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +          M   +L         +    L     R +   +      + +       
Sbjct: 135 SSSWIDAELIYMLKLFLEKLNINNLTYEINSLGCKRCRPQYRKVLFSFLADKVNQLCIDC 194

Query: 219 TQVFCSKDFM--DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            + F        D  +PS      +   +              S        +       
Sbjct: 195 KRRFEKNPLRVLDCKVPSCKESLKNTPLIVDF-LCQDCKEHFLSLQKELDEMNISYAVNP 253

Query: 277 VSARGIEVG-------HIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAA 327
              RG++              G + ++     +                + IG  R++  
Sbjct: 254 KIVRGLDYYTRTVFEVTTTMLGAQNAVAAGGRYDDLVELFGGPTTPAAGFAIGMERLI-- 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +I P    PF + +  I +  +      +K+   L               
Sbjct: 312 ---EICSNSLLIKPKK--PF-VYVAYIGSSVEK---EAKKVVNFLRNNNIPTETAYEKLS 362

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + SQ   AD +G  + +I+G   +  S    K+   G + + SL E++     ++
Sbjct: 363 LKSQLRKADRVGANIVIIIGEDEIKKSVYIWKNMKDGSQGEASLNELLELIRRKY 417


>gi|184201296|ref|YP_001855503.1| glycyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|183581526|dbj|BAG29997.1| glycyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 460

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 121/363 (33%), Gaps = 65/363 (17%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + +   K  +   T + +  +       + +  PF   QI   FR+E+ P   + R+RE
Sbjct: 150 PVDNEEGKHFLRPETAQGIFVNFLNVVTAARKKPPFGIGQIGKAFRNEITPGNFIFRTRE 209

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F + P+ +K  +++   +    F  LG+    MR             + V A
Sbjct: 210 FEQMEIEYF-IHPDEAKKYFDEWVEACWDWFVDLGVNPDNMR------------RYDVPA 256

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D                         D    +         +        E +  +   +
Sbjct: 257 D-------------------------DRAHYSDGTIDIEYRFGFQGSEWGELMGVANRTD 291

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             +S       H    GTK        F  A G+ +   +     G  R + A +  ++ 
Sbjct: 292 FDLSN------HTEASGTK-----MQYFDQASGERYTPYVIEPSFGLTRSMMAFLVDAYV 340

Query: 335 GKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                           +     +AP K +++ + +  +  R   + + A L +   ++ +
Sbjct: 341 EDEAPNTKGGVDTRTVLRLDPRLAPVKAAVLPL-SKKEDLRPTAQHLDAELRR-RWNIDY 398

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++   D +G P  + V    + D  V I+ R    +E + L+ V  Y + R
Sbjct: 399 DDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRSRDEMTQERVGLDRVQQYLAER 457

Query: 442 FSN 444
              
Sbjct: 458 LEK 460


>gi|325956619|ref|YP_004292031.1| histidyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325333184|gb|ADZ07092.1| histidyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327183445|gb|AEA31892.1| histidyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 428

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 141/437 (32%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSSNPLADVQTIMMG---HDLLAELGVKNYQLHINTLGNEQVRKDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+  +LS +          ++  SKD  D     +     D +  +S    
Sbjct: 178 HDALVNYFTPVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDDSKQNF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +          +  + D            + E         E       G +Y      
Sbjct: 238 ESILKMLDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
             +  +G         +GIG  R++  + + +    + +GI            + NI   
Sbjct: 294 LVEEFNGPATPAV--GFGIGEERLMLVLEKQNPALFENRGI---------DFFITNIGDG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    +I   L K G +  +D   +++ +QF  AD       + +G K + +  + 
Sbjct: 343 ---TAQKAIEITRSLRKQGFEADFDVNQKKLKAQFKKADRDHAKYVITLGEKELENGVLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SLE++
Sbjct: 400 IKRLADGKTIDLSLEDI 416


>gi|217316815|gb|ACK37813.1| putative glutamyl-prolyl tRNA synthetase [Parastacus defossus]
          Length = 128

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+G+   R +  +I    D K
Sbjct: 9   SGRGIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGLT-TRTIGVMIMVHGDNK 67

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +               +AC K+ A L+  G     D   
Sbjct: 68  GLVLPPRVASVQAIIMPVGITAKSSEQDKSNLVNACNKLAADLNAAGVRARCDLRD 123


>gi|294055777|ref|YP_003549435.1| glycyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293615110|gb|ADE55265.1| glycyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 512

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 120/370 (32%), Gaps = 74/370 (20%)

Query: 93  MLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M          +       P   + +   +++ + + R  +PF   QI   FR+E+ PR 
Sbjct: 195 MFETKVGPLADDSATAYLRPETAQGIFANYKNIVDTGRVKIPFGIAQIGKAFRNEITPRN 254

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + RSREF   +   F       +  + +   + +     +GL    +            
Sbjct: 255 FIFRSREFEQMEIEYFIAPDADWRQLHREWLDTCIDWLVSIGLPRESV------------ 302

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                      T+    +D + F   +      +       +           + H +  
Sbjct: 303 -----------TEDIHPEDKLAFYSQATTDLMFEFPHGEQELWGIACRSDYDLNQHQKHS 351

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
             S+                                    K  Y   +    +G  R + 
Sbjct: 352 GKSM-----------------------------EIFDESSKSKYVPHVIEPSLGVDRTLL 382

Query: 327 AVIESSH------DGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           AV+ +++      + KG       + +   +AP+K ++  +  +     +  + +Y RL 
Sbjct: 383 AVLTAAYCEDEVPNDKGKAEKRTLLKFSPKIAPYKAAVFPLLKNKPELVERAQALYQRLQ 442

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLE 432
           +   +VF+D  G  IG ++   D +G P  + +    +  D  V ++ R T  +  ++ +
Sbjct: 443 R-RWNVFYDASGA-IGRRYRRQDEIGTPFGITIDFDTIEKDGTVTLRDRDTCEQRRVTED 500

Query: 433 EVINYASHRF 442
           E+I +   + 
Sbjct: 501 ELIAFLEEQI 510



 Score = 44.2 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNV-NAIIRE-EQNRTGAIEMSVPTLQS 76
           L  R G I   S       G + + PLG +  +N+  A  R+    R     +    +  
Sbjct: 17  LCKRRGFIFPSSEIYGGYNGFFDYGPLGVELRNNIKQAWWRDFVHRRDDIEGLDSSIIMH 76

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            D+W  SG  D +   M+   +   +   
Sbjct: 77  PDIWKASGHVDGFSDPMVDCKESKLRYRA 105


>gi|227328675|ref|ZP_03832699.1| histidyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 424

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 134/440 (30%), Gaps = 53/440 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRAGIEHGILYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M   + R+   LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAELILMTARWWRV---LGIAD-HVKLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E  V   +   D                    +                  D  
Sbjct: 173 ARARYREALVAFLEQHKDQLDEDCLRRMYTNPLRVLDTKNPQIQVLLNDAPVLTDYLDDE 232

Query: 272 PENKR------------------VSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
                                     RG++     +F       G + ++     + G  
Sbjct: 233 SRAHFEALGELLTQSGIPYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMV 292

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQV-CR 362
                H      + +G  R+V  V   + D K         P   + LI+     QV   
Sbjct: 293 EQLGGHATPAVGFAMGLERLVLLVQSVNPDFKA-------QPNVDVYLISSGTGTQVAAM 345

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+   L ++     +     +   QFA AD  G  + +++G   V+  +V +K+  
Sbjct: 346 QLAEKLRDALPQLKLMTNYGGGNFK--KQFARADKWGARVALVLGENEVAAGQVVVKNLS 403

Query: 423 TGIREDMSLEEVINYASHRF 442
            G ++ ++  +V +  +   
Sbjct: 404 NGEQDTLAQADVASRLATLL 423


>gi|158320739|ref|YP_001513246.1| histidyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|166980043|sp|A8MGM7|SYH_ALKOO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|158140938|gb|ABW19250.1| histidyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 421

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/449 (14%), Positives = 130/449 (28%), Gaps = 62/449 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP        V  + +E   R G  E+  P  +  +L+        D 
Sbjct: 1   MLTNGPRGTKDVLPSEAYKWHYVEGVFKEVAKRFGFEEIRTPVFEHTELFERGVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR  +++   P         F  H       P   + I   FR E RP+ G
Sbjct: 61  VEKEMYTFLDRGGRSITLKPEGTAPAARSFIEHKLYADTQPTKMFYITPVFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----- 203
             R RE       +F  +          +    + ++   G+K + +R  S  +G     
Sbjct: 120 --RFREHHQFGVEAFGASSASVDAE---VINLAMSVYEAFGVKKLELRINS--VGCPKCR 172

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN-----SIVEQWTAPYAA 258
            + +        +   Q+  +        P    D              ++         
Sbjct: 173 AEYNKVLRAFLSSRLDQLCGTCQNRFERNPIRIIDCKSDSCQAQLTDVPLMMDHLCGECQ 232

Query: 259 TSDVHNEKLFDSLPENK---RVSARGIEVGHIFYF---------------GTKYSLPMSA 300
                 +K  ++   +        RG++      F               G +Y      
Sbjct: 233 DHFEELKKYLEASGLHYVIDPRIVRGLDYYTKTAFEIITEEAGKKGTVCGGGRYDK---- 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +   G         +G+G  R + A+     + +GI  P       + ++ +    + 
Sbjct: 289 LVEDCGGPSTPGV--GFGMGIERAILAL-----EDQGIEIPKPEG-LDVFIVTMG---EK 337

Query: 361 CRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKV 416
                 K+   L + G     D  D   +   ++A            +I+G   +     
Sbjct: 338 ASYEGFKLLTALRRAGFSGDKDHLDRSVKAQFKYAN----KVNASYTIIIGENELEKGIA 393

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++K+       ++ L++ I       S  
Sbjct: 394 KLKNMANSEEIEIELKD-ITKLKEILSGR 421


>gi|148984420|ref|ZP_01817708.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923197|gb|EDK74311.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800869|emb|CBW33526.1| histidyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 429

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVSQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 RQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|289207920|ref|YP_003459986.1| histidyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943551|gb|ADC71250.1| histidyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 427

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 144/434 (33%), Gaps = 49/434 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDSYGKEMLR 95
           G++  LP       ++   +R   +  G  E+ +P +++ +L+  S     D   KEM  
Sbjct: 9   GMHDILPESIHVWQHLEDRLRGLLDGYGYQEIRMPVVEATELFKRSIGDVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   +  +    + +   FR E RP+ G  R R+F
Sbjct: 69  FEDRNGDSLSLRPEGTASCVRAGIQHGLLHNQV-QRLWYLGPMFRHE-RPQKG--RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------GPIGGDLS 207
                  F L           M     R++  LGL+++ +   +              ++
Sbjct: 125 HQVGVEVFGLPGPDVDAE---MIAMTARLWKLLGLENVRLELNTLGTPASRVRYRDQLIA 181

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +         E  +    D     + S++ +   +++    +       + T        
Sbjct: 182 YFEQHRDSLDEEALRRLHDNPMRILDSKHPETRAVVANAPSLMDHLDAESRTHFDSLRAH 241

Query: 268 FDSLPE---NKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--AD--GKDHYVQ 313
            D+L     +     RG++              G + ++     + G      G+     
Sbjct: 242 LDALGIAYVHNPRLVRGLDYYTHTVFEWITDDLGAQGTVCAGGRYDGLVEQLGGRGTPAI 301

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC---RDACEKIYA 370
             + G+     + A++E+  D      PD+          +   D++     +  E++ +
Sbjct: 302 GMAMGL---ERLVALLEAREDAPQPPGPDAY--------LVVGGDELVGPALELAERLRS 350

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG-IRED 428
            L   G  +     G    SQ   AD LG    +++G+   +   V +K  R  G  +  
Sbjct: 351 ELP--GLRLVQHCGGGSFKSQMKRADRLGAHFALVLGTDEHAAGTVTVKPLRSPGAEQSA 408

Query: 429 MSLEEVINYASHRF 442
           +  EE+  +     
Sbjct: 409 VPREELARHLEQAL 422


>gi|22299095|ref|NP_682342.1| seryl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|30173151|sp|Q8DIN0|SYS_THEEB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|22295277|dbj|BAC09104.1| seryl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 430

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 12/200 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L LG      +   + +     G +E+  P L +      +G+   + +E  R AD
Sbjct: 167 FVTLLGLGAALERALIQFMLDSHRERGYVEVLPPLLVNTASLTGTGQLPKFAEESFRCAD 226

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            +   +   PT E  +T+++R  I +   LP         FR E     +   G++R  +
Sbjct: 227 DD---LWLIPTAEVPVTNLYRDEILAADQLPIYHCAYTPCFRREAGSYGKDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F + PE S   +  +      I   L L    +   +G +G         E 
Sbjct: 284 FNKVELVKF-VHPETSAAEHEALVADAEFILQALKLPYRVIELCTGDLGFAAMKCYDLEV 342

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +F DF
Sbjct: 343 WLPAAGCYREISSCSNFGDF 362


>gi|52425505|ref|YP_088642.1| seryl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|67461718|sp|Q65SK3|SYS_MANSM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|52307557|gb|AAU38057.1| SerS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 430

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 19/232 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS----KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAI 67
           D EI  H  +     G I   +     G    +  GQ  K    +   + +    + G  
Sbjct: 134 DFEIKDHVTLGENLAGGIDFAAGAKLSGARFAVMKGQVAKMHRALAQFMLDLHTEQHGYT 193

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           E  VP L +      +G+   +G+++        +      PT E  +T++ R  I +  
Sbjct: 194 ETYVPYLVNHTTLYGTGQLPKFGEDLFHTTPLEGEVPYALIPTAEVPVTNLVRDEILNTE 253

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     R   G++R  +F   +     + P+ S  +  ++     
Sbjct: 254 DLPIRMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VDPDKSMEALEELTAHAE 312

Query: 183 RIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
           ++   LGL    M   +G +G         E  V A     ++    +  DF
Sbjct: 313 KVLQLLGLPYRKMLLCTGDMGFGSCKTYDLEVWVPAQDTYREISSCSNMWDF 364


>gi|166077764|gb|ABY80976.1| glutamyl-prolyl tRNA synthetase [Paramysis inflata]
 gi|166077782|gb|ABY80985.1| glutamyl-prolyl tRNA synthetase [Paramysis ullskyi]
 gi|166077784|gb|ABY80986.1| glutamyl-prolyl tRNA synthetase [Paramysis ullskyi]
          Length = 145

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDILFEDPTAPDKKQYVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L         D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDDERLALIKAAEQLAKELVDGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|326334002|ref|ZP_08200231.1| glycine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325948151|gb|EGD40262.1| glycine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 466

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 114/355 (32%), Gaps = 70/355 (19%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
               P   + +   F + + S R  P F   Q    FR+E+ P   + R+REF   +   
Sbjct: 163 HYLRPETAQGIFVNFANVVTSTRQKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEM-- 220

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                                                         EF V    GE +  
Sbjct: 221 ----------------------------------------------EFFVK--PGEDE-E 231

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             + ++D           +  +L             +    + +   + P ++     GI
Sbjct: 232 WHQYWIDERTRWYTDLGINPDNLRHYEHAQEKLSHYSKRTVDIEYRFNFPGSEWGELEGI 291

Query: 283 EVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--- 337
                F  GT  K+S      F  A+ + +   +     G  R +   +   +  +    
Sbjct: 292 ANRTDFDLGTHMKHSGQDLQYFDQANNERYLPYVIEPAAGLTRALMTFLVDGYAEEEAPN 351

Query: 338 ----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +     +AP KI+++ + + ++      + + A L +    V +DD  + 
Sbjct: 352 AKGGVDKRVVLRLDHRIAPVKIAVLPL-SRNEALSPKAKALSAELRQNWA-VDFDDS-QS 408

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           IG ++   D +G P  V V    + D+ V I+ R T  +E + LE V  Y + R 
Sbjct: 409 IGKRYRRQDEIGTPYCVTVDFDTLEDNAVTIRERDTMKQERIPLEGVSRYFAERL 463


>gi|292491215|ref|YP_003526654.1| histidyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291579810|gb|ADE14267.1| histidyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 421

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 134/433 (30%), Gaps = 42/433 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +R      G  E+ +P L+  +L+  S G   D   K
Sbjct: 5   QAIRGMNDILPDQTPHWQMVEDTLRNVLASYGYQEIRLPLLEPTELFQRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H       P   +     FR E RP+ G  R
Sbjct: 65  EMYTFTDRNGDSLTLRPEGTAGCVRSVLQHGLLT-QGPQRLWYYGAMFRHE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+F                     M     R + +LGL+ + ++  S           +
Sbjct: 121 YRQFFQIGVEVLGPKGPDVDVELILM---TARFWRQLGLEGLRLQLNSLGSPAARATYRE 177

Query: 206 LSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              +F         +    +   +    + S+N    +II     +  +    +      
Sbjct: 178 RLVDFFTDHQDCLDEDSRRRLHSNPLRILDSKNPALQEIIEQAPRLLDYLDKDSRDHFEA 237

Query: 264 NEKLFDSLPE---NKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--ADGKDHY 311
            + L DS            RG++              G++ ++     F G         
Sbjct: 238 LQDLLDSAGIAYEINPRLVRGLDYYTRTVFEWVSDQLGSQGTVCAGGRFDGLVEQLGGQP 297

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                + +G  R++  + E      G +   ++    + ++ +    +        +   
Sbjct: 298 TPAVGFALGLERLITLLGEQ-----GCLKEPAI--VDLYVVAVGPQAEHQSLL---LAEH 347

Query: 372 LSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIRED 428
           L +   G  +  +  G    SQ   AD  G    +I+G   V    V +K  R    ++ 
Sbjct: 348 LREAVPGVRLQVNYGGGSFKSQLKRADRSGARWALILGEDEVVQGTVSVKDLRKAQPQQS 407

Query: 429 MSLEEVINYASHR 441
           M   ++ +Y   +
Sbjct: 408 MPQSKLPDYIRQQ 420


>gi|262305707|gb|ACY45446.1| glu- + pro-tRNA synthetase [Artemia salina]
          Length = 134

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+       G  +S      F+  + K+  +V   S+GI   R +  ++    D K
Sbjct: 15  SGRGIQGATSHMLGQNFSKMFDIGFENPETKERSHVWQNSWGIT-TRTIGVLVMVHADNK 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ +I     +    +      + C ++   L+  G  V  D       
Sbjct: 74  GLVLPPRVASVQVVIIPCGITVDTKQEDRNRHYELCMQLEKELAGNGIRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|228469877|ref|ZP_04054816.1| glycyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228308512|gb|EEK17300.1| glycyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 517

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/509 (14%), Positives = 157/509 (30%), Gaps = 101/509 (19%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMS 70
           +I SH      G +   S        +Y +   G +  +N+     E   R     + + 
Sbjct: 10  KIVSHCK--EYGFVFPSSDIYDGLSAVYDYGQNGVELKNNIKRYWWEAMTRLHPNVVGID 67

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                  D+W  SG  D++      L D  D    Y      +   I +   K+ + +  
Sbjct: 68  SSIFMHPDIWRASGHIDAFND---PLIDNKDSKKRYRADV-LIEDQIAKIEGKAEKEIDK 123

Query: 131 TFYQIQLKFRDE------------------------------------------------ 142
              +    F DE                                                
Sbjct: 124 ARKRFGDSF-DESLYRTTNPRVKGYLEQAEALRQRMAKALNDNDLEELRQIIIDEKIVCP 182

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSK------HSYNKMFVSYLRIFH--RLGLKSIP 194
           +         R+F +  A     T +G+        +   +FV+YL +    R+ L    
Sbjct: 183 ISGTTNWTEVRQFNLMFATEVGSTADGASTIYLRPETAQGIFVNYLNVQKTGRMKLPFGI 242

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            +     IG    +E +        + F   +   F  P    ++ +      +   +  
Sbjct: 243 AQ-----IGKAFRNEIVARQFIFRMREFEQMEMQYFVQPGTELEWFEYWKKLRLHWHYAL 297

Query: 255 PYAA-TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKG----- 304
            +       H+ +               +  G+    G    T + L     F G     
Sbjct: 298 GFPQSDYRYHDHEKLAHYANAATDIEYLMPFGYKEVEGIHSRTDFDLSRHEEFSGKKLRY 357

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLI 352
                 + +   +    IG  R+  +V+  S+  +          +  P ++AP K++++
Sbjct: 358 YDPETKESYIPYVVETSIGVDRMFLSVLCGSYKEEQTESGETRVVLSLPPALAPVKLAVL 417

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +   D    +   ++  RL  +     +D+  + IG ++   D +G P  + V  + + 
Sbjct: 418 PLVRKD-GLDEKAHEVV-RLLHLDFTCQYDE-KDSIGKRYRRQDAIGTPYCITVDHQTLE 474

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D+ V ++ R T  +E +++ E+ +  + R
Sbjct: 475 DNTVTLRDRDTMQQERIAIAELHDLIAQR 503


>gi|326561007|gb|EGE11372.1| seryl-tRNA synthetase [Moraxella catarrhalis 7169]
          Length = 422

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 12/208 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G  EM VP + ++D    +G+   + +++ +L  R +K     PT
Sbjct: 174 RALVQFMLDTHTQKYGYTEMYVPYMVNSDSLQGTGQLPKFEEDLFKL--RGEKEYYLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+  R  I S R+LP         FR E     R   G++R  +F   +      
Sbjct: 232 SEVPLTNSVRDTILSPRDLPIKLTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMVQV-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             + S  +  +M      +   L L    M   +G +G         E  + +     ++
Sbjct: 291 RADSSMQALEQMTAQAEYVLQALELPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNMYREI 350

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIV 249
               +  DF     +    D      + 
Sbjct: 351 SSCSNCGDFQARRMSARLKDGKHSELVH 378


>gi|256851204|ref|ZP_05556593.1| histidyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260660628|ref|ZP_05861543.1| histidyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|282934671|ref|ZP_06339914.1| histidine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297206070|ref|ZP_06923465.1| histidine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256616266|gb|EEU21454.1| histidyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260548350|gb|EEX24325.1| histidyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|281301246|gb|EFA93547.1| histidine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297149196|gb|EFH29494.1| histidine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 426

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 148/455 (32%), Gaps = 77/455 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      + V  I R+   +    E+  P+ +S +++  S     D   K
Sbjct: 4   QKPKGTVDILPEVSGNWEKVEQIARDFFKQANYREIRTPSFESYEVFSRSSGETSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   F  +     ++  PF  Y I+  FR E RP+ G 
Sbjct: 64  EMYDFNDKGGRHIALRPEGTAGVVRSFVENKMYGPDVVKPFNVYYIESMFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +      M    L    +LG+K+  +   S          
Sbjct: 122 -RQREFHQIGCESFGSNNPLADIETIMMGNDLLN---KLGVKNFELHINSLGNEDVRQKY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK+  D           D +   S    
Sbjct: 178 HDALVDYFTPVKDQLSEDSQRRLGKNPLRILDSKEEQDKQFLPNAPRIVDYLDDESKANF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF----------------GTK 293
                A         L D          RG++   G IF F                G +
Sbjct: 238 KYITDALDKLGIKYVLDD-------DLVRGLDYYTGVIFEFMVADTDLWASPTTVLGGGR 290

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKI 349
           Y+           G      +G +GIG  R++  V+E          GI           
Sbjct: 291 YN-----HLVEEFGGPETPAVG-FGIGEERLML-VLEKQNPELFADTGI---------DF 334

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            + NI    +       ++   L K G  V +D   +++ +QF  AD +     + +G K
Sbjct: 335 FIANIG---EGTAMKSVELARTLRKQGKKVQYDVDQKKLKNQFKKADRVHAEFVITLGEK 391

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +++  V IK    G +   S +E +N  S    N
Sbjct: 392 ELAEGNVSIKRLADGKQIKFSWDE-MNNISEAMKN 425


>gi|153949863|ref|YP_001400168.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|166980051|sp|A7FFZ0|SYH_YERP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|152961358|gb|ABS48819.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
          Length = 424

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 140/433 (32%), Gaps = 45/433 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + +I+++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIESILKQVLSGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLPGPDIDAE---LILLTARWWRALGI-FEHVKLELNSIGSLAARADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   ++     +  +    +    
Sbjct: 178 REALVAFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQLLDDAPKLSDYLDEESKQHF 237

Query: 262 VHNEKLFDS---LPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--AD--G 307
               +L D             RG++  +           G + ++     + G      G
Sbjct: 238 AGLCELLDKASIPYTVNERLVRGLDYYNRTVFEWVTHSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACE 366
           +        + +G  R+V  V   + D +        A     +I+     Q       E
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVNADFQVP------ATVDAYVISSGEGSQSAAMLLAE 349

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L  +     +     +   QF  AD  G  + +++G   V+  +V +K    G +
Sbjct: 350 SLRDALPTLKIMTNYGGGNVK--KQFTRADKCGARVALMLGESEVAAQQVVVKDLRNGEQ 407

Query: 427 EDMSLEEVINYAS 439
           E ++  +V    +
Sbjct: 408 ETLAQADVAARLA 420


>gi|329121508|ref|ZP_08250132.1| histidine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327469423|gb|EGF14893.1| histidine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 418

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 134/428 (31%), Gaps = 37/428 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP        +   IR+  +     E+  PT ++ +L++       D   KEM  
Sbjct: 6   GTQDILPENIYKWQYLEQKIRQICSLYNFEEIRTPTFEATELFLRGIGDTTDVVTKEMYT 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P +   +   +  +     N     + I   FR + RP+ G  R REF
Sbjct: 66  FNDRGGRSITLRPENTAAVVRSYLENKMYVDNTTHKLFYIGSMFRYD-RPQAG--RYREF 122

Query: 156 LMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHE 209
                  F L   GS+  Y   ++    ++ F  LGLK + +   S  +G      + HE
Sbjct: 123 HQ-----FGLEVLGSQDPYVDAEVIDLAVQFFKDLGLKELELHINS--VGHVECRKVFHE 175

Query: 210 -FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
             I   +  + ++    +   +  P    D  +      I            D   +   
Sbjct: 176 KLIAFLEPKKDELCEDCNTRLYKNPLRVLDCKNTTCKRIIEGAPNIVDCLCDDCSEKFEK 235

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV---- 324
                ++      ++   +       +      ++    +      G Y      +    
Sbjct: 236 LKTYLDELGIEYIVDPLLVRGLDYYTNTAFEIMYEPLGAQSTICGGGRYDGLVNEIGGIQ 295

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKIS----LINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           V  +  +    + I+  +    F        + I    +  R     I   L K      
Sbjct: 296 VPGIGMAIGMERLILALEQQNLFPEVKNENQVFIATVGEKARVKGVGIVKALRKQQIHA- 354

Query: 381 WDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               G  +  +        AD   +P  VI+G   +   K  +K+  T  ++++  E ++
Sbjct: 355 ----GTTMQEKSLKSLLKQADKEKYPFVVIIGEDELQKGKAILKNMETKEQKEIDFETLV 410

Query: 436 NYASHRFS 443
            Y      
Sbjct: 411 EYIKETVK 418


>gi|238018958|ref|ZP_04599384.1| hypothetical protein VEIDISOL_00818 [Veillonella dispar ATCC 17748]
 gi|237864442|gb|EEP65732.1| hypothetical protein VEIDISOL_00818 [Veillonella dispar ATCC 17748]
          Length = 423

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 136/444 (30%), Gaps = 53/444 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G   +LP        +   +RE     G  E+  P  +   L++       D 
Sbjct: 1   MAIRKPRGTQDFLPEQMINWHYIEQRMREICKVYGFNEIRTPAFEDTKLFLRGIGETTDV 60

Query: 89  YGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM      D    +    P +       +  +    +     +Y +   FR + +P+
Sbjct: 61  VQKEMYTFTTGDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHD-KPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
            G  R R+F    A                M V   ++    GLK + +   S       
Sbjct: 120 AG--RYRQFHQFGAEVLGSQSPVVDSEVICMVV---QLLKDFGLKDLNVEVNSVGCPTCR 174

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+  +   EF    +  + Q+        +  P    D  +    +  V           
Sbjct: 175 PVYREKLIEFF---EPKKEQLCSDCQERLYKNPLRILDCKNETCKSLSVGAPEIHEHLCE 231

Query: 261 DVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT----------- 301
           + H+            +          RG++      F  +Y+ P+ A            
Sbjct: 232 ECHDHFEELKTYLTAANVQYTLNPRLVRGLDYYTKTAFEVQYT-PLGAQSAVAGGGRYDG 290

Query: 302 -FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQ 359
             +  DG         + +G  R++ A+       K  + P  +V P    +    A   
Sbjct: 291 LVEELDGPHTPAI--GFAMGMERLLLAL------EKQNLLPEPTVEPSAFVV----ALGD 338

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +    KI   L      V  D  G+ + +Q   A+ +     +I+G   ++  +  I+
Sbjct: 339 VAKVEAFKICQALHDAYVTVEMDGQGKSMKAQLKYANKINAKYVIILGDDELARGEAIIR 398

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
              T  +E + L+ V    +    
Sbjct: 399 FMETSEQETVPLDTVSERITSLVK 422


>gi|299138678|ref|ZP_07031856.1| seryl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298599314|gb|EFI55474.1| seryl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 443

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 18/223 (8%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR----- 99
           G +    +   + +      G  E+  P + ++     +G    + +++    D+     
Sbjct: 170 GARLERALANFMLDLHTRENGYAEVLPPFMVNSTSLFGTGNLPKFAEDLFHCDDKGPYIP 229

Query: 100 ---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRS 152
              ++      PT E  +T++FR       +   +F      FR E     +   G++R 
Sbjct: 230 GQLHENDHWLIPTAEVPITNLFRDETIDLSDGTISFTAYTPCFRSEAGSYGKDVRGMIRQ 289

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---- 208
            +F   +   F   PE S   + K+      +  RLGL    M   +G +G   S     
Sbjct: 290 HQFQKVELVKF-ARPEDSSAEHEKLTRDAESVLERLGLPYRRMLLCTGDMGFSSSKTYDL 348

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           E  V       ++    +F  F     N  +    S  +    
Sbjct: 349 EVWVPGQETYREISSCSNFESFQARRANIRYKPAGSNKTEFVH 391


>gi|306834557|ref|ZP_07467670.1| histidine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|296777684|gb|ADH43101.1| histidyl-tRNA synthetase [uncultured bacterium MID12]
 gi|304423359|gb|EFM26512.1| histidine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 425

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 137/447 (30%), Gaps = 63/447 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V A+ RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPSESAKWQYVEAVARETFKKYNYSEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS +++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F  LG+K + +   +       
Sbjct: 120 AG--RLREFHQVGVECFGSANPATDVETIAM--AYQ-LFQILGIKDVTLHLNTLGSAVSR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 175 SAYRQALIDYLTPMREQLSKDSQRRLDENPLRVLDSKEKEDKIAVENAPSILDYLDDESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLP--------- 297
                            +  +          RG++     IF F T              
Sbjct: 235 AHFDAVRSML-------ETLNIPYVIDTNMVRGLDYYNHTIFEFITTVDKSELTICAGGR 287

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             +  +  DG +       +G          +    + +GI  P       + +  +   
Sbjct: 288 YDSLVEYFDGPETP----GFGFALG---LERLLLILEKQGIELPVE-KEMDVYIAVLG-- 337

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q       ++   +   G     D +G +I +QF  AD       + +G   +   +V 
Sbjct: 338 -QGANLKALELVQAVRNQGFSAERDYLGRKIKAQFKSADAFNAKTIITLGESEIEAGQVA 396

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           +K+  T     +S +E+ N  +   + 
Sbjct: 397 VKNNKTREEVTVSFDEIANNFAEVLNK 423


>gi|295102728|emb|CBL00273.1| glycyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 473

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 122/369 (33%), Gaps = 66/369 (17%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +       P T + +  +       + R LPF   Q+   FR+E+ P  
Sbjct: 152 MFKTAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F       +      + SY + +       LG+K   +R      
Sbjct: 212 FTFRTREFEQMECEFFCKPGTDLE------WFSYWKDYCENWLLSLGIKKEHLRLRD--- 262

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                HE   LA       F S+   D       TD+ ++  +          +   S  
Sbjct: 263 -----HEPAELA-------FYSRATTDIEYAFPFTDWGELWGIADRTNYDLTRHQEASGK 310

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             E       E+         +G       + +L         +         S G   +
Sbjct: 311 SLEYFDSETNEHYIPYVIEPSLGC-----DRVALAFLCEAYDEEH-----LTDSKGKEDV 360

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R V            +    ++AP+K +++ +        D   +I   LSK    V +D
Sbjct: 361 RTV------------LHLHPALAPYKCAVLPLSKK---LGDKAMEIRNELSKY-FMVDYD 404

Query: 383 DMGEQIGSQFAVADLLGFPLQVIV-----GSKF---VSDSKVEIKHRLTGIREDMSLEEV 434
           D G  IG ++   D +G P  + V     G +     +D+ V ++ R T  +  M + E+
Sbjct: 405 DTG-SIGKRYRREDEIGTPYCITVDFDTVGDEAKGIAADNCVTVRDRDTMEQVRMPISEL 463

Query: 435 INYASHRFS 443
            +Y   +  
Sbjct: 464 KSYIESKIE 472


>gi|2392169|pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
           Thermophilus
 gi|2392170|pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
           Thermophilus
          Length = 505

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 117/360 (32%), Gaps = 60/360 (16%)

Query: 105 IYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++ + +  R L F   QI   FR+E+ PR  + R REF   +   F
Sbjct: 184 YLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYF 243

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                  R G      R            E +        ++  
Sbjct: 244 V----------------------RPGEDEYWHRY--------WVEERLKWWQ----EMGL 269

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           S++ +        +      +   I+ ++         +     FD     K   A GI 
Sbjct: 270 SRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGI- 328

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI----- 338
                    ++S    A      GK     +     G  R V A++  +   + +     
Sbjct: 329 --TARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEE 386

Query: 339 ----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFA 393
                    +AP K+++I +  +     +  +++ ARL  +G   V ++D G  IG  + 
Sbjct: 387 RIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGN-IGKAYR 445

Query: 394 VADLLGFPLQVIV----------GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D +G P  V V          G+  + D  V ++ R T  +  + ++E+  +   R  
Sbjct: 446 RHDEVGTPFAVTVDYDTIGQSKDGTTRLKD-TVTVRDRDTMEQIRLHVDELEGFLRERLR 504


>gi|320334430|ref|YP_004171141.1| Histidyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319755719|gb|ADV67476.1| Histidyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 428

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 127/419 (30%), Gaps = 49/419 (11%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDK-AMIYG 107
           ++V  + R    R GA  M+ P  + A++      G  D   KEM  +  + +    +  
Sbjct: 30  EHVIGVARGVLERAGAQFMATPMFEEAEVVKRGVGGSTDIVRKEMFTVFYQGEHGGYVLR 89

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +       P   +     FR E R + G  R R+F   D      T 
Sbjct: 90  PEGTAPIVRAYIQNGLKQLPAPLKLWTTGAMFRAE-RNQQG--RYRQFHQVDYEVLGSTD 146

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI---------------- 211
                         +R+   LGL  + ++   G IG     E                  
Sbjct: 147 PLVDAE---AIALMVRVVEALGLTGVGVKL--GSIGDPEDRERYNAYLRELFTPERERLS 201

Query: 212 ----VLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  D    ++  SK   D   I   +               +              
Sbjct: 202 GDSQDRLDRNPMRILDSKSDEDQRLIAGLHVQPMLAFLGEEARAHFEVVQGYLRAWGVPF 261

Query: 267 LFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGA 321
             D          R    E+ H    G K +L     + G     G      +G +  G 
Sbjct: 262 EVDPSIVRGLDYYRRTAWELHHAH-IGAKSALGGGGRYDGLAAQLGGPETPGIG-WAFGV 319

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+     + +G++ P+   P     + + A D        ++   L +    V +
Sbjct: 320 ERLLIAM-----EQEGLVIPEPDGPA----LFLAAMDAENVPLVARVAMEL-RADAHVEF 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                + G+ F  AD        +VGS   +   + +K   +G + D+ L ++  + + 
Sbjct: 370 AYRAMKPGAAFKEADRKRARYAAVVGSNEAATGVLRVKALASGAQADVPLADLAAFLAQ 428


>gi|314928065|gb|EFS91896.1| glycyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
          Length = 504

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 122/398 (30%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D      +   T + +  +   
Sbjct: 164 EEINCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDEAGLHYLRPETAQGIFVNFQN 217

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +                    
Sbjct: 218 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEM------------------- 258

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                        EF V   T E      + ++D          
Sbjct: 259 -----------------------------EFFVEPGTDEE---WHQYWIDERTNWYTDLG 286

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLP 297
            +  +L             +    + +       +      GI     F  GT  K+S  
Sbjct: 287 INADNLRHYEHPKEKLSHYSKRTVDIEYKFGFAGSDWGELEGIANRTDFDLGTHTKHSGK 346

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
             + F  A  K +   +     G  R + A +  ++                 +     +
Sbjct: 347 DLSYFDQAQNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 406

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP K +++ +  +          + A+L +   +V +DD    IG ++   D +G P  V
Sbjct: 407 APVKAAVLPLSRNSD-LSPKARDLAAQLRQWW-NVDFDDAQA-IGKRYRRQDEIGTPFCV 463

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D+ V ++ R T  +E ++L++V +Y + R 
Sbjct: 464 TVDFDTLDDNAVTVRDRDTMSQERIALDKVEDYLAERL 501


>gi|291514571|emb|CBK63781.1| glycyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 514

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/487 (13%), Positives = 146/487 (29%), Gaps = 91/487 (18%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +   G +  +N+     +   +     + +          W  SG   ++      L
Sbjct: 33  VYDYGQNGVELKNNIKRYWWDSMVKLHENIVGIDAAIFMHPKTWEASGHVSAFND---PL 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF----------------- 139
            D  D    Y      +   + +   K  + +     +    F                 
Sbjct: 90  IDNKDSKKRYRADV-LIEDWLAKQDEKIEKEVEKARKRFGESFDEAKYRETSPRVAETAA 148

Query: 140 -RDE-----------------------------LRPRFGVMRSREFLMKDAYSFDLTPEG 169
            RDE                             +         R+F +  +     T EG
Sbjct: 149 KRDEVHKRFADALNANDLAELRQIIVDCEIACPISGTRNWTEVRQFNLMFSTQMGSTAEG 208

Query: 170 SK------HSYNKMFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +        +   +FV++L +    R+ +     +     IG    +E +        + 
Sbjct: 209 ANTIYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQ-----IGKAFRNEIVARQFIFRMRE 263

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-----------FDS 270
           F   +   F  P     + +      +       +       ++              + 
Sbjct: 264 FEQMEMQFFVRPGTEMKWWNEWKNTRMAWHRALGFGDDDYRFHDHDKLAHYANAATDIEY 323

Query: 271 LPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     GI     F  G   K+S      F    G+ +   +    IG  R+   V
Sbjct: 324 NFPFGFKEVEGIHSRTDFDLGSHQKFSGKKLQYFDPETGESYVPYVVETSIGVDRMFLQV 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           + +++  + +          +P ++AP K++++ +   D    +  +KI   L K   +V
Sbjct: 384 MSAAYTEQTLEGGDSRVVLKFPPALAPVKVAVLPLVKKD-GMPEVAQKIVDLL-KYDYNV 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+  + +G ++   D +G P  V V  + + D  V I+HR T  +E + +E +     
Sbjct: 442 VYDE-KDSVGKRYRRQDAVGTPFCVTVDGQTLEDGTVTIRHRDTMAQERVKIESLHAMVD 500

Query: 440 HRFSNNR 446
              S  +
Sbjct: 501 EECSYRK 507


>gi|262066990|ref|ZP_06026602.1| histidine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379296|gb|EFE86814.1| histidine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 413

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 130/411 (31%), Gaps = 45/411 (10%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + +E     G      P  +  DL+    G   D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQEMFENYGYKFAKTPIFEETDLFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              M   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASMVRCYLENSIYAKEDVSRFYYNGSMFRYE-RPQAG--RQREFNQIGVEVFGEKSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAE------SGPIGGDL------SHEFIVLADTGE 218
                 M         +LG+  + ++        S  I  +       SH   +  D  +
Sbjct: 141 DAEVIAMG---YNFLTKLGITDLEVKINSVGSKGSRTIYREKLVEHFQSHLDDMCEDCKD 197

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                    +D  +   + DF                           +F          
Sbjct: 198 RINRNPLRLLDCKVDG-DKDFYKSAPSIIDYLFEDERKHYEEVKKYLTIFGVKFTEDPTL 256

Query: 279 ARGIEVG--HIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIE 330
            RG++     +F       G++ ++     +     +     + ++G  A +  V  +I 
Sbjct: 257 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAFGFAAGVERVMMLIG 316

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            ++            P  +  + I    +   +   KI   L K    V+ D   +  G 
Sbjct: 317 DNY------------PKDVPDVYIAWLGENTIETAMKIADSLRKENVKVYVDYSSK--GM 362

Query: 391 Q--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +     AD L     +I+G   ++   V +K   T  ++++ +EE+IN+  
Sbjct: 363 KSHMKKADKLETRYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIINHIK 413


>gi|229112357|ref|ZP_04241895.1| Glycyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228671005|gb|EEL26311.1| Glycyl-tRNA synthetase [Bacillus cereus Rock1-15]
          Length = 487

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                +S
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MS 282

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 283 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 327

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 328 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 367

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 368 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 423

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 424 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 482

Query: 440 HRFS 443
            +  
Sbjct: 483 QKIQ 486


>gi|296875422|ref|ZP_06899496.1| histidine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296433615|gb|EFH19388.1| histidine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 430

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 140/441 (31%), Gaps = 71/441 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   R    E+  P  +  ++   S     D   K
Sbjct: 7   QKPKGTQDILPGDSAKWQYVEGFARKVFARYHYDEIRTPIFEHYEVISRSVGDTTDIVTK 66

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY I   FR E RP+
Sbjct: 67  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYIGPMFRYE-RPQ 122

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M   +L+    LG+ ++ +   +       
Sbjct: 123 AG--RLRQFHQIGVECFGSSNPATDVETIAMAAQFLK---ELGIDNVILHLNTLGSPASR 177

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D     +     D+ D  S 
Sbjct: 178 QAYRQALIDYLLPMKDQLSKDSQRRLEENPLRVLDSKEKEDKAAVEQAPSILDYLDEESQ 237

Query: 246 NSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGTK 293
                          A   D +  +  D            IE         G        
Sbjct: 238 AHFDAVRRMLEDLGVAYVIDTNMVRGLDYYNHTIFEFITEIEGNELTVCAGGRYDGLVEY 297

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +  P +A F              +GIG  R++  +     + KGI  P         +  
Sbjct: 298 FGGPATAGFG-------------FGIGVERILLVL-----EKKGIELPIETG-LDAYIAV 338

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        +A   +   L   G     D +G ++ +QF  AD+      + +GS  V  
Sbjct: 339 LG---DEVNEAALSLVQALRIQGFKAERDYLGRKLKAQFKSADVFAAKALITLGSSEVES 395

Query: 414 SKVEIKHRLTGIREDMSLEEV 434
            +V +K+  T     ++LE +
Sbjct: 396 GQVTVKNNQTRQEVTVALESL 416


>gi|322390642|ref|ZP_08064156.1| histidine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321142615|gb|EFX38079.1| histidine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 430

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 140/441 (31%), Gaps = 71/441 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   R    E+  P  +  ++   S     D   K
Sbjct: 7   QKPKGTQDILPGDSAKWQYVEGFARKVFARYNYDEIRTPIFEHYEVISRSVGDTTDIVTK 66

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY I   FR E RP+
Sbjct: 67  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYIGPMFRYE-RPQ 122

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M   +L+    LG+ ++ +   +       
Sbjct: 123 AG--RLRQFHQIGVECFGSSNPATDVETIAMAAQFLK---ELGIDNVTLHLNTLGSPASR 177

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D     +     D+ D  S 
Sbjct: 178 QAYRQALIDYLLPMKDQLSKDSQRRLEENPLRVLDSKEKEDKAAVEQAPSILDYLDEESQ 237

Query: 246 NSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGTK 293
                          A   D +  +  D            IE         G        
Sbjct: 238 AHFDAVRRMLEDLGVAYVIDTNMVRGLDYYNHTIFEFITEIEGNELTVCAGGRYDGLVEY 297

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +  P +A F              +GIG  R++  +     + KGI  P         +  
Sbjct: 298 FGGPATAGFG-------------FGIGVERILLVL-----EKKGIELPIETG-LDAYIAV 338

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        +A   +   L   G     D +G ++ +QF  AD+      + +GS  V  
Sbjct: 339 LG---DEVNEAALSLVQALRIQGFKAERDYLGRKLKAQFKSADVFAAKALITLGSSEVES 395

Query: 414 SKVEIKHRLTGIREDMSLEEV 434
            +V +K+  T     ++LE +
Sbjct: 396 GQVTVKNNQTRQEVTVALENL 416


>gi|217316837|gb|ACK37824.1| putative glutamyl-prolyl tRNA synthetase [Crangon crangon]
          Length = 134

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  + K   Y    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFDIVFEDPETKQKQYCYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINI-----KAHDQV--CRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +        D+     +AC K+   L   G  V  D   
Sbjct: 74  GLVLPPRVATIQAVVLPVGLTVKSTDDEKTNIYNACSKLAEELKSHGIRVRCDVRD 129


>gi|227893458|ref|ZP_04011263.1| histidyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227864737|gb|EEJ72158.1| histidyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 428

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 142/437 (32%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V  + R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPDQSGSWQKVEEVARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   +      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSSNPLADVQTIMMG---HDLLGELGVKNYQLHINTLGNEQVRQDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+  +LS +          ++  SKD  D     +     D +  +S    
Sbjct: 178 HDALVNYFTPVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDDSKQNF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            T          +  + D            + E         E       G +Y      
Sbjct: 238 ETILKMLDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
             +  +G         +GIG  R++  + + +       GI            + NI   
Sbjct: 294 LVEEFNGPATPAV--GFGIGEERLMLVLEKQNPALFKQHGI---------DFFITNIG-- 340

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       +I   L K G +  +D   +++ +QF  AD       + +G K +++  + 
Sbjct: 341 -EGTAQKAIEITRSLRKQGFEADFDVNQKKLKAQFKKADRDHAKYVITLGEKELANGILN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           +K    G   D++LE++
Sbjct: 400 VKRLADGKTIDLNLEDI 416


>gi|166077820|gb|ABY81004.1| glutamyl-prolyl tRNA synthetase [Paramysis nouveli]
          Length = 145

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTAPDKKQYVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINI-----KAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +        D+      A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITTKTTEDEKLALIKAAEQLQKELVEGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|315634912|ref|ZP_07890194.1| histidine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315476464|gb|EFU67214.1| histidine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 425

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 141/436 (32%), Gaps = 42/436 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +R   +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTETPLWQWVENKVRSVLSAYGYAEIRMPIVESTPLFARAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR+++++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMFTFDDRDEESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F +           +     R++  LG+    +  +   IG   + +  
Sbjct: 122 YRQFHQVGVEIFGIPNPEIDAE---LIALTARLWKDLGIFD-HVTLQLNSIGSLEARKNY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK---LF 268
             A     Q        D            + S +  V++         D  ++     F
Sbjct: 178 RQALVDFLQNHIDILDEDSKRRLTTNPLRILDSKDQRVQEVLNDAPKLHDYLDDDSREHF 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSAT--------FKG--ADGKD 309
             L           E+      G  Y         +  + A         + G       
Sbjct: 238 AQLCALLDNLGIQYEINQKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR-DACEKI 368
           H      + +G  R+V  V E +     I  P +V    I ++       V   +  EK+
Sbjct: 298 HATSGVGFAMGLERLVLLVQEVNTQ---ITLPSAV---DIYIVYQGEGTTVAAFNLAEKL 351

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IRE 427
            + L            G     QF  AD  G  L +++G   V + +V +K+ L    + 
Sbjct: 352 RSELP--HLRTLLHCSGGNFKKQFKRADKSGAKLALVIGEDEVKNQQVVVKNLLQHSEQA 409

Query: 428 DMSLEEVINYASHRFS 443
            ++L ++IN+  + F 
Sbjct: 410 VVALGDIINHIQNTFK 425


>gi|189219251|ref|YP_001939892.1| glycyl-tRNA synthetase (class II) [Methylacidiphilum infernorum V4]
 gi|189186109|gb|ACD83294.1| Glycyl-tRNA synthetase (class II) [Methylacidiphilum infernorum V4]
          Length = 457

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/504 (14%), Positives = 148/504 (29%), Gaps = 146/504 (28%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQS 76
           L  R G+I   S       G++ + PLG +   N+     +   +  T  + +    L +
Sbjct: 13  LCKRRGIIFPSSEIYGGINGVWDFGPLGVELKRNIKESWWKTMTQLRTDVVGLDGSILMN 72

Query: 77  ADLWVESGRYDSYGK---------EMLRLADRNDKAMIYGPTHEEV-----------MTD 116
            ++W  S   D +              RL    + +    P+                  
Sbjct: 73  REVWKASTHEDQFVDWFVDCKVCRARFRLDHLKESSCPLKPSKHPGECGGELTEPRRFNL 132

Query: 117 IFRSHI-----------------------------KSYRNLPFTFYQIQLKFRDELRPRF 147
           +F++++                              S   +PF   QI   FR+E+ PR 
Sbjct: 133 LFKTYVGPLEEEGALTYLRPETAQSIFVQFKNVLESSRMKIPFGIAQIGKAFRNEVNPRN 192

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + RSREF            E  +  Y                           I  D  
Sbjct: 193 FIFRSREF------------EQMELEY--------------------------FIPPDTG 214

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E+I      E ++   +                 I+   I  +                
Sbjct: 215 FEYIEQW--KEERIAWYESIG--------------IAREHIHLRDVPESERAFYSRKTYD 258

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +      R    GI     F       +S      +       +   +     G  R +
Sbjct: 259 LEYDFPFGRQELEGIAYRTDFDLKQHAIFSGKSMEYYDEERKCKYIPHVVEPSAGVDRTL 318

Query: 326 AAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            A++  S+  + II             +   +AP KI +  +  +        + I++ L
Sbjct: 319 LALLCESYREEEIIDEGGKKEKRVVLGFTPKIAPIKIGVFPLLKNKIELVQKAQAIFSLL 378

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV--------------GSKFVSDSKVEI 418
            K+    F+D+ G  IG ++   D +G P  V V              G K      V +
Sbjct: 379 -KIHFKSFYDESGA-IGRRYRRMDEIGTPFCVTVDFETLEGVREGKLAGKKD----TVTV 432

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           ++R +  ++ +++++++++   + 
Sbjct: 433 RYRDSMKQDRIAVDDLVDFFREKI 456


>gi|52425975|ref|YP_089112.1| histidyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|81691321|sp|Q65R83|SYH_MANSM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52308027|gb|AAU38527.1| HisS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 427

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 151/440 (34%), Gaps = 47/440 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V + +R      G  E+ +P +++  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTETPVWQWVESKVRSTLASYGYSEIRMPIVENTPLFARAIGEVTDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR+++++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMFTFNDRDNESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-------SIPMRAESGPIGG 204
            R+F       F +           + +   R++  LG++       +     E+     
Sbjct: 122 YRQFHQAGVEVFGIANAEIDAE---LIILTARLWKELGIEQHVTLQLNSIGSLEARANYR 178

Query: 205 DLSHEF------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYA 257
               EF      ++  +  E  +      +D    +     ++    L+ + +     +A
Sbjct: 179 SALVEFLQQYVGLMNEEEKERLLKNPLRILDTKNEALQQALNNAPKLLDYLDDDSREHFA 238

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGK 308
               + +          K    RG++     +F       G + ++     + G      
Sbjct: 239 RLCAILDNVGISYEINPKL--VRGLDYYNKTVFEWVTTALGAQGTICGGGRYDGLVEQLG 296

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---C 365
            H      + +G  R++  V E +   K I  P S     + +  I A +     A    
Sbjct: 297 GHATCGVGFAMGLERLILLVQEVN---KAIPLPQS----AVDIYLIFAGENTASAAFRLA 349

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG- 424
           EK+ + L            G     QF  AD  G  + +++G   V + +V +K  L G 
Sbjct: 350 EKVRSELP--HLRTMMHCSGGNFKKQFKRADKSGAKIALVLGESEVQNQQVVVKDLLGGA 407

Query: 425 IREDMSLEEVINYASHRFSN 444
            ++ ++LE VI++    F  
Sbjct: 408 EQQTVALEAVIDHLKTSFKE 427


>gi|321441349|gb|ADW85089.1| glu- + pro-tRNA synthetase [Zeuzera coffeae]
          Length = 134

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHFLGQNFSKMFDIIYDDPETQEKKYVYQTSWGLT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++                  ACE++ A L   G     D       
Sbjct: 74  GLVLPPRIAEIQAIVVPCGITASSSAEDRAKLTAACEQLVAELKAAGIRADGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|225859879|ref|YP_002741389.1| histidyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|254782347|sp|C1CAV1|SYH_STRP7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225721003|gb|ACO16857.1| histidyl-tRNA synthetase [Streptococcus pneumoniae 70585]
          Length = 429

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 RQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|166077828|gb|ABY81008.1| glutamyl-prolyl tRNA synthetase [Paramysis arenosa]
 gi|166077830|gb|ABY81009.1| glutamyl-prolyl tRNA synthetase [Paramysis arenosa]
          Length = 145

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      ++      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIAYEDPSVPDKKQYVYQNSWGLT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +               DA +++ + L+        D      
Sbjct: 81  KGLVLPPRVAAVHCIIMPVGITAKTTAEERSALVDAAKQLQSELTAGNVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|126466028|ref|YP_001041137.1| glycyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|126014851|gb|ABN70229.1| glycyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 588

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 75/557 (13%), Positives = 160/557 (28%), Gaps = 152/557 (27%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI--EMSVPTLQSADLWVESGRYDSY----- 89
            G Y + P G     N+             +  E+  P +    +   SG  D +     
Sbjct: 33  AGFYDFGPNGVLIKRNIINEWLNNLVYNTGLVLEIETPIITPRIVLKASGHEDHFTDPIT 92

Query: 90  ---------------------------GKEMLRLADRNDKAMIYGP---THEEVMTDIFR 119
                                        E+ +L   ++          T  +    +F+
Sbjct: 93  ECTRCGRVFRADHLIEEALGIRAEGLSMDELWKLIKEHNIRCPECGGELTKPKPALLLFK 152

Query: 120 SHIKSYR---------------------------NLPFTFYQIQLKFRDELRPRFGVMRS 152
           + I  Y+                            LP    QI    R+E+ PR G++R 
Sbjct: 153 TEIGPYKGSPAYLRPETAQGMFVSFKHVLNIARNKLPLGIAQIGRVGRNEISPRQGLLRL 212

Query: 153 R-------EFLMKDAYSFDLT----PEGSKHSYNKMFVSYLR------------------ 183
           R       EF      +F+ T     +  ++    +  +  +                  
Sbjct: 213 REFTIMELEFFFDPEKAFEETMKYMTDEIRNEKLNIITAEDKLRGEEKTRKYTAIELIEN 272

Query: 184 -----------------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                               +LG+ S  +R +       L  E    ++    Q   ++ 
Sbjct: 273 KIVKNPWMAYWMALGNIFLRKLGISSEKIRFDE-----KLPEEKAHYSEQTFDQEVYTEK 327

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEV 284
           +    +   +      +S +    +    Y    D   +K    +  N +      G ++
Sbjct: 328 YGWIEVAGYSYRTTYDLSRHIKYSKADLTYFKKYDKPIKKKIVKIVPNPKKIREIVGKDI 387

Query: 285 GHIFY-FGT-------------------KYSLPMSATFKGAD-----GKDHYVQMGSYGI 319
           G +                          Y L               G+     +     
Sbjct: 388 GTVMKKLNEIPAEKILEELNKNNYVEISNYKLSRECFIISEKEETIHGEKIIPHVVEPSF 447

Query: 320 GAMRVVAAVIESS----HDGK-GIIWPDSVAPFKISLINI----KAHDQVCRDACEKIYA 370
           G  R+   V+E+S     DG+  +  P  +AP+K+++  +    K   +       ++Y 
Sbjct: 448 GLERIFYVVLENSISIARDGRIVLKLPPRIAPYKVAVFPLVTGNKPEHKKMVSIARQVYR 507

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +     ++D+ G  IG ++A AD +G P  + +  + + D  V ++ R +  +  + 
Sbjct: 508 ALLENNILAYYDEEG-SIGRRYARADEIGIPYAITIDYQTLEDETVTLRDRDSREQIRLH 566

Query: 431 LEEVINYASHRFSNNRP 447
           ++E+ +         + 
Sbjct: 567 IQELHDKLISLLGLKKE 583


>gi|322386507|ref|ZP_08060134.1| histidine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321269426|gb|EFX52359.1| histidine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 426

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 134/438 (30%), Gaps = 65/438 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +    R+   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPQESAKWQYLEEFARKTFKKYNYAEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M     + F  +G+  + ++  S       
Sbjct: 120 AG--RLREFHQIGVECFGSENPATDAETIAMAA---QFFKEIGIGQVTLQLNSLGNAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D    ++     D +   S 
Sbjct: 175 AAYRQALIDYLTPLKDSLSKDSQRRLEENPLRVLDSKEKEDKAAVAQAPSILDFLDEES- 233

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYS---LPMSA--- 300
                      +     +             RG++     IF F T  +   L + A   
Sbjct: 234 ------QEHFAAVRSMLESLGVPYVINTNMVRGLDYYNHTIFEFTTDVAGSELTICAGGR 287

Query: 301 --TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   G       G +G+G  R++  +     + +G   P         +  +    
Sbjct: 288 YDGLVDYFGGPETPAFG-FGMGMERLLLIL-----EKQGAALPFETG-LDAYIAVLG--- 337

Query: 359 QVCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +    +  ++   L   G     D  D   +   + A A        + +G   +  ++V
Sbjct: 338 EAANRSALELVQALRNQGFAAERDYLDRKLKAQFKSADAFRAKT--IITLGESEIESNQV 395

Query: 417 EIKHRLTGIREDMSLEEV 434
            +K+  T     + L +V
Sbjct: 396 TVKNNETRQEVVVGLNQV 413


>gi|166077816|gb|ABY81002.1| glutamyl-prolyl tRNA synthetase [Paramysis kroyeri]
 gi|166077822|gb|ABY81005.1| glutamyl-prolyl tRNA synthetase [Paramysis nouveli]
          Length = 145

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTAPDKKQYVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINI-----KAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +        D+      A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTEDEKLALIKAAEQLQKELVEGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|291529102|emb|CBK94688.1| glycyl-tRNA synthetase, dimeric type [Eubacterium rectale M104/1]
          Length = 465

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 120/373 (32%), Gaps = 84/373 (22%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F   P      +      Y R F R     LG+K   MR      
Sbjct: 214 FTFRTREFEQMELEFF-CEPGTDLEWFK-----YWRGFCRDWLISLGIKEDEMRLRD--- 264

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                       D  E   +                          +             
Sbjct: 265 -----------HDPAELAFYS---------KGTTDIEFLFPFGWGELWGIADRTDYDLGR 304

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           H E     L                              F       +   +    +GA 
Sbjct: 305 HQEVSGQDLTY----------------------------FDDQKNDKYLPYVIEPSLGAD 336

Query: 323 RVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           RVV A + +++D + I             +  ++AP KI ++ +        ++ EK++A
Sbjct: 337 RVVLAFLCAAYDEEDIGTPEKPDVRTVFHFHPALAPVKIGVLPLSKK---LNESAEKVFA 393

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +LSK   +  +DD G  IG ++   D +G P  V        D  V ++ R T  +E ++
Sbjct: 394 QLSKT-YNCEYDDRG-TIGKRYRRQDEIGTPFCVTYDFDSEEDHCVTVRDRDTMEQERIA 451

Query: 431 LEEVINYASHRFS 443
           ++E+  Y + +F 
Sbjct: 452 IDELDAYFAKKFE 464


>gi|300780725|ref|ZP_07090579.1| glycine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532432|gb|EFK53493.1| glycine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 460

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 144/452 (31%), Gaps = 76/452 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     +   +     + +    +    +WV SG  + +     E L
Sbjct: 33  WDYGPLGVELKENLKRQWWKTMVQSRADVVGVDTSIILPPQVWVASGHVEVFTDPLVESL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R     +     E+        H  +         +        E R   G+M++ 
Sbjct: 93  HTHKRYRADHLLEAYEEKH------GHPPANGLADINDPETGQPGNWTEPRAFSGLMKTY 146

Query: 154 EFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDL 206
              + D      + PE ++  +             +  K++   A   P      +G   
Sbjct: 147 LGPVDDKEGLHYMRPETAQGIF-------------VNFKNVMTSARMKPPFGIANVGKSF 193

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E         T+ F   +   F  P E     D       ++     Y          
Sbjct: 194 RNEITPGNFIFRTREFEQMEMEFFVKPGE-----DEQWHQYWIDARHQWYIDLGINPENL 248

Query: 267 LFDSLPENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD----- 306
                P+ K    S R +++ + F F              T Y L   A   G D     
Sbjct: 249 RLYEHPQEKLSHYSKRTVDLEYAFGFQGSKWGELEGVANRTDYDLKTHAEASGEDLSFFD 308

Query: 307 ---GKDHYVQMGSYGIGAMRVVAA-VIESSHDGKGII------------WPDSVAPFKIS 350
              G+           G  R + A +I++ H+ +                   ++P K++
Sbjct: 309 QESGERWIPYCIEPAAGLGRAMMAFLIDAYHEDEAPNAKGGVDKRVVLKLDRRLSPIKVA 368

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +    ++     E++ A L +    + +D  G  IG ++   D +G P  V      
Sbjct: 369 VLPLSKKPELSGP-AEELAATLRQHW-SIDYDTSGA-IGRRYRRQDEIGTPFCVTFDFDS 425

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + D  V ++ R T  +E + L+E+ +Y + R 
Sbjct: 426 LEDKAVTVRERDTMEQERVPLDELESYLAARL 457


>gi|255066517|ref|ZP_05318372.1| serine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049101|gb|EET44565.1| serine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 431

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMKGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D + K     PT E  +T+     I +  
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKKTQYLIPTAEVTLTNTVADSILAEG 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|271963873|ref|YP_003338069.1| anticodon binding domain-containing protein [Streptosporangium
           roseum DSM 43021]
 gi|270507048|gb|ACZ85326.1| anticodon binding domain protein [Streptosporangium roseum DSM
           43021]
          Length = 461

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 125/349 (35%), Gaps = 39/349 (11%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + D +  A +   T + +  +       + + +PF   QI   FR+E+ P   + R+REF
Sbjct: 152 VEDESGLAYLRPETAQGIFINYLNVQQSARKKIPFGIGQIGKSFRNEITPGNFIFRTREF 211

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F + P   +  +        R +  LG+    +R    P    LSH      D
Sbjct: 212 EQMEMEFF-VKPGTDEEWHQYWIDERFRWYTDLGISQDNLRIYEHP-QEKLSHYSKRTVD 269

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                 F   ++ +    +  TDFD      +     +     T + +   + +      
Sbjct: 270 IEYRFNFTGSEWGELEGVANRTDFDLTAHGKASGTDLSFFEQDTGERYVPYVIEPAA--- 326

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                G++   + +        + A  +        V         MR+           
Sbjct: 327 -----GVDRATLTFL-------LDAYTEDEAPNAKGVMEKR---TVMRL----------- 360

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +AP K++++ + + +       + + A+L +   +V +DD G  IG ++   
Sbjct: 361 -----DHRLAPVKVAVLPL-SRNADLSPKAKDLAAQLRR-RWNVEFDDAGA-IGRRYRRQ 412

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D +G P  + V    + D  V I+ R +  +E ++L++V  Y     ++
Sbjct: 413 DEIGTPFCITVDFDTLDDQAVTIRERDSMAQERVALDQVEAYLRQHLND 461


>gi|332796370|ref|YP_004457870.1| glycyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694105|gb|AEE93572.1| glycyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 570

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 7/143 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQV 360
             GK     +     G  R +   + +++  K     +  P  +AP+++++  +   D++
Sbjct: 417 ESGKRFIPHVVEPSFGVERCLYISVLNAYREKKDRIVLSLPREIAPYEVAVFPLLERDEL 476

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +IY+++ +   D  +DD G  IG ++A AD +G P  + V  + + D+ V I+ 
Sbjct: 477 IS-RAREIYSKVKEK-FDAIFDDSG-SIGKRYARADEIGIPYAITVDPQTLQDNTVTIRD 533

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +  +  EE+IN     FS
Sbjct: 534 RDTWNQIRVKEEELINTLEKLFS 556



 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 78/259 (30%), Gaps = 76/259 (29%)

Query: 38  GIYSWLPLGQKALDNVNAIIRE---EQNRTGAIEMSVPTLQSADLWVESG---------- 84
           G+Y   P+G +  + +  + R+   E+N    +E+  P +    ++  SG          
Sbjct: 28  GLYDIGPIGTRIKNKIVQLWRKIFVEENSDFVVEIETPMITPKKVFEASGHLENFTDPIV 87

Query: 85  ---------RYDSYGKEMLRLADRNDKAMIYGPT------HEEV----------MTDIFR 119
                    R D   +E+L+++    KA               V             +F 
Sbjct: 88  ECNKCHRVFRADHLVEEVLKISAEGLKAEELTNLIREKNIKCPVCGGDLGDVRYFNLLFS 147

Query: 120 SHIKSYR---------------------------NLPFTFYQIQLKFRDELRPRFGVMRS 152
           ++I  Y                             LP    Q+    R+E+ PR G++R 
Sbjct: 148 TNIGPYTGSTGFLRPETAQGMFTSFKRVYESTREKLPLGIAQVGRVARNEISPRQGLIRM 207

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF + +   F + PE +++              +     I +      I GD    F V
Sbjct: 208 REFTIMEIEFF-MDPEDTENV----------PLDKFSEDKINVLPAEAKIKGDKPSTFKV 256

Query: 213 LADTGETQVFCSKDFMDFP 231
                E  V          
Sbjct: 257 KELVDEKIVINPWMAYWMA 275


>gi|147921639|ref|YP_684544.1| seryl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121677008|sp|Q0W8S5|SYS_UNCMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|110619940|emb|CAJ35218.1| seryl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 425

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 19/294 (6%)

Query: 16  RDAEIASHKLM-LRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           +D EI +H L+ +  G             G Y            +     +   + G   
Sbjct: 135 KDFEIKNHGLLAVEHGWADFERAAKVAGAGFYFLKGNMVLLDMALQRFAMDLLVKRGFTP 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           ++ P + +   +        + K M ++       M    T E  +  +++  I   ++L
Sbjct: 195 VTPPYMMNRKSYEGVTDLADFEKVMYKI---EGDDMYLIATSEHPIGAMYQGEIFEEKDL 251

Query: 129 PFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P     I   FR E+        G+ R  +F   + + F   PE S   + ++  +   +
Sbjct: 252 PLRLAGISPCFRREIGAHGLDTKGLFRVHQFHKIEQFVF-CKPEDSWKIHEEILANAEAV 310

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           F +LGL    +   +G IG   +     E  +  +    +V    +   +     N    
Sbjct: 311 FQQLGLPYHVVNICTGDIGTVAAKKYDIEVWMPRENTYKEVVSCSNCTAYQATRLNIKVR 370

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           D     S     T    A +     +      + K  S    EV   +  G +Y
Sbjct: 371 DPKDFESKRYVHTLNSTAIATSRAMRAILENNQQKDGSVLIPEVLRPYMNGLEY 424


>gi|15678272|ref|NP_275387.1| histidyl-tRNA synthetase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621293|gb|AAB84750.1| histidyl-tRNA synthetase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 444

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 146/437 (33%), Gaps = 49/437 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEML 94
            +G   +L    +    V  ++R      G  E+  P  +   L+ V+SG  +    ++ 
Sbjct: 25  PRGTRDFLFAEMRNRKEVEGVLRRTFETYGYHEIKTPIFEELKLFTVKSG--EEVVNQIY 82

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + +   P     +  ++ + ++  +  P   Y     FR E RP+ G  R R+
Sbjct: 83  HFTDKGGRELALRPELTAPVARLYMNEMQK-KPKPIKMYYFGSCFRYE-RPQAG--RFRQ 138

Query: 155 FLM------------KDAYSFDLTPEGSKHSYN---KMFVSYLRIFH-RLGLKSIPMRAE 198
           F               +A    L  E          ++ + +L I    LG + IP   +
Sbjct: 139 FWQFGCELIGGRSPLAEAEVISLASESLHELGLDGFEVHIGHLGILRGILGREEIPSELQ 198

Query: 199 SGPIG-GDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
              +G  D      + A  GE +V   S++ +   I ++            +     +  
Sbjct: 199 DRIMGVIDKGDVEELEALLGEVEVSGESRELLMKLIGTQGGPEVLDDVEEYLGGYSESLE 258

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDHYVQ 313
           A        +       +      GI  G  +Y G     Y   + A  +   G  + + 
Sbjct: 259 ALEEFRELVETLHYFGVDDYHVNLGIARGLDYYTGIVFEIYVPELGAQKQICGGGTYNLV 318

Query: 314 MGSYGIGAM---------RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
               G             R++ A+     D + +          + +I I   D    +A
Sbjct: 319 ETFGGERVESTGFAFGFDRLMNALGM---DEENMRM------VDVFVIPI--QDSTVPEA 367

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I   L   G     +  G ++    + AD LG    V+ G + + D KV +K     
Sbjct: 368 I-RITQELRAAGVSADLEVSGRKLRKALSHADNLGARFAVLTGEREIQDGKVTVKDMERN 426

Query: 425 IREDMSLEEVINYASHR 441
            +E +  +E+++    R
Sbjct: 427 SQETLPRDEMVDKIKGR 443


>gi|67903696|ref|XP_682104.1| hypothetical protein AN8835.2 [Aspergillus nidulans FGSC A4]
 gi|40740933|gb|EAA60123.1| hypothetical protein AN8835.2 [Aspergillus nidulans FGSC A4]
          Length = 1309

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 127/388 (32%), Gaps = 77/388 (19%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSRE--------FLMKDAYSFDLTPEGSK-------- 171
           +PF    I   FR+E+ PR G++R RE        F+  +        E  K        
Sbjct: 239 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHFVDPEGGKKHARFEEVKNIELTLLN 298

Query: 172 ---------------------------HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                                       +             +LG+    +R     +  
Sbjct: 299 RDVQLSGSTKTERMTVGKAVETGLVDNETLGYFLARIQLFLLKLGVDPTKLRF-RQHMAN 357

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +++H      D    +++ S  +++    ++ + +D  +  N               +  
Sbjct: 358 EMAHYACDCWD---AELYTSYGWIECVGCADRSAYDLNVHKNKTGAPLVVRETRAEPLKV 414

Query: 265 EK---LFDSLPENKRVSARG-------------------IEVGHIFYFGTKYSLPMSATF 302
           E+     D      R    G                   +++         Y + +    
Sbjct: 415 EEWQIELDKKKFGPRFKKDGKTVEAAIDALSQELREKLALDLEKTGKIEVGYIITIEKRT 474

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------IIWPDSVAPFKISLINIK 355
           +  + +++   +     G  R++ +++E  +  +        + +P  +AP K+ L+ + 
Sbjct: 475 RVENVREYTPNVIEPSFGIGRILYSLMEHVYYYREGDEARGVLSFPPVIAPTKVLLVPLS 534

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           ++    R   +++  +L ++G     DD    IG ++A  D LG P  V V  + V D+ 
Sbjct: 535 SN-PAFRPMVQELTTKLRRLGVSSRVDDSSASIGKRYARNDELGTPFGVTVDFQSVKDNT 593

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           + ++ R +  +   S EE++        
Sbjct: 594 ITLRDRDSTKQVRASQEEILQALKSLVE 621



 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G   L+N+    R+        +E+    L   ++   SG  D +   M
Sbjct: 38 SGLYDYGPPGCAVLNNIVETWRKHFVLEEDMLEVDCTMLTPEEVLKTSGHVDKFADWM 95


>gi|300121084|emb|CBK21466.2| unnamed protein product [Blastocystis hominis]
          Length = 917

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/466 (14%), Positives = 144/466 (30%), Gaps = 69/466 (14%)

Query: 27  LRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           L++G +H+     KG   + P        + + IR    R G +E+  P  +  +    +
Sbjct: 438 LKSGGVHRKPKLPKGTRDFTPEQMAIRHRLFSQIRAVFERHGGVELDTPVFEEKETL--T 495

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G+Y    K +  LAD+  + +          T  F  ++  +       + I   +R + 
Sbjct: 496 GKYGEDSKLIYDLADQGGELLALRYDL----TVPFARYLAVHGVSQLKRFHIAKVYRRD- 550

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            P     R REF   D        + +  +   +  + + ++  +G+ +I ++     + 
Sbjct: 551 NPATSKGRFREFTQCDLDVAGAYDDMTADA--DVIAAGIEVYEEVGVGNIAVKINHRALL 608

Query: 204 GDLSHEFIVLA---------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
             +     V A               +  E   F   +    P    +   + +    + 
Sbjct: 609 DGMMEICGVPAGKVRAIGSAIDKLDKEPWEAVRFEMTEKKGLPAEVADRIREFVEIRGTP 668

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---- 304
            E      A      +   + +L   +R+      +GH+       SL     +      
Sbjct: 669 WEVLERLEAMPCMRSHGAAWAALASMRRLFGYLEAMGHLAKLSFDMSLARGLDYYTGVIY 728

Query: 305 ----------------------------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                                       A GK       S G+     V  ++E     +
Sbjct: 729 EVVLLDNPYGVGSIGAGGRYDKLVGMFSASGKQIPCVGISIGV---ERVFTILEKKAADE 785

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVA 395
           G +     AP  + + +        R    +I   L + G    +      ++  Q   A
Sbjct: 786 GTL---RCAPCDVFVASAGKELAAQR---MRIAGMLWRNGIKAEFGYQANPKLQKQLTYA 839

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              G    V+VG + +   KV +K+  T     + +E V++    +
Sbjct: 840 LESGVKWIVVVGEEEMKQGKVNLKNLQTREEVTIPVESVVDELKKQ 885


>gi|124006194|ref|ZP_01691029.1| glycyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123988118|gb|EAY27776.1| glycyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 500

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 131/356 (36%), Gaps = 45/356 (12%)

Query: 93  MLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M         D ++K  +   T + +  +       S + +PF   QI   FR+E+  R 
Sbjct: 176 MFSTEIGSVADESNKIYLRPETAQGIFVNFMNVQKTSRQQIPFGIAQIGKAFRNEIVARQ 235

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            V R REF   +   F + P      Y+    + ++    +GL +  +R           
Sbjct: 236 FVFRMREFEQMEMQYF-VRPGEEMQWYDHWKETRMKFLQAIGLPAEKLR----------Y 284

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+ I LA         +    +FPI      F ++  ++S  +   + +A  S    + +
Sbjct: 285 HDHIKLAHYANAA---ADIEFEFPIG-----FKELEGIHSRTDFDLSKHAEFSKTKIQYV 336

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D++ +  +       V         +   +S +   A+G      + + G    R    
Sbjct: 337 DDTIEDKDKRKYIPYVVETSIGLDRLFLAVLSNSLTTAEG------IDAKGNAKTRTF-- 388

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +    ++AP K+++  +   D    +  + I+  L +      +++ G  
Sbjct: 389 ----------LKIHPALAPNKVAVFPLLRKD-GLPEIAKGIFNDL-RHDFKTIYEERGA- 435

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG  +   D++G P  + V  +   D+ V ++ R T  ++ + +E++    +   S
Sbjct: 436 IGKLYTRQDMIGTPFCITVDHQTKEDNTVTVRERDTTEQKRVKIEDLHAMINKEVS 491


>gi|326577649|gb|EGE27526.1| seryl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 422

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 12/208 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G  EM VP + ++D    +G+   + +++ +L  R +K     PT
Sbjct: 174 RALVQFMLDTHTQKYGYTEMYVPYMVNSDSLQGTGQLPKFEEDLFKL--RGEKEYYLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+  R  I S R+LP         FR E     R   G++R  +F   +      
Sbjct: 232 SEVPLTNSVRDTILSPRDLPIKLTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMVQV-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             + S  +   M      +   L L    M   +G +G         E  + +     ++
Sbjct: 291 RADSSMQALEDMTAQAEYVLQALELPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNMYREI 350

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIV 249
               +  DF     +    D      + 
Sbjct: 351 SSCSNCGDFQARRMSARLKDGKHSELVH 378


>gi|218696141|ref|YP_002403808.1| histidyl-tRNA synthetase [Escherichia coli 55989]
 gi|254782330|sp|B7LCQ4|SYH_ECO55 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218352873|emb|CAU98672.1| histidyl tRNA synthetase [Escherichia coli 55989]
          Length = 424

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 129/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             F  AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFTRADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|166077832|gb|ABY81010.1| glutamyl-prolyl tRNA synthetase [Schistomysis assimilis]
          Length = 145

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTAPEKKQYVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L         D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDDERSALIKAAEQLQKELVDGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|308234212|ref|ZP_07664949.1| seryl-tRNA synthetase [Atopobium vaginae DSM 15829]
          Length = 396

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 73/222 (32%), Gaps = 13/222 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    +     +  N  G  E   P L + D    +G+   + +++  ++ 
Sbjct: 153 FYVLGGYGAQMERALINFFIDMHNEAGFKEWWPPVLTNYDSLFGTGQLPKFDEDLFHVS- 211

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E ++T++ R  +     LP  +      FR+E     R   G++R  E
Sbjct: 212 ---NDLYLIPTAEVMLTNLHRDEVLDASQLPLKYTAFTPCFREEAGSAGRDTRGIIRVHE 268

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE S +    M     +    LGL    +   +G IG         E 
Sbjct: 269 FDKVEMVKF-AKPEDSMNQLESMVAEAEKCLQVLGLAYRVVSLCTGDIGFSACKCYDLEV 327

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            + +     ++    +  DF     N  + D           
Sbjct: 328 WLPSYNNYKEISSCSNCWDFQARRANIKYRDPSEFKGTRYVH 369


>gi|91792615|ref|YP_562266.1| histidyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|122968867|sp|Q12PT3|SYH_SHEDO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|91714617|gb|ABE54543.1| histidyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 424

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 153/435 (35%), Gaps = 42/435 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V A++R   +  G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKVEAVLRSSVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNSDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAES------GPIGG 204
            R+F       + +           + +   R++ +LG+   + +   +           
Sbjct: 122 YRQFHQFGVEVYGIGTADIDAE---VLMLSARLWQQLGIDEHVSLELNTLGDPSERAAYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D    F+        +    + + +    + ++++    +++    +  +    + T   
Sbjct: 179 DALIAFLEQHKDKLDEDSQRRMYSNPLRVLDTKDSQVQALLADAPALMDYLGEESKTHFS 238

Query: 263 HNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKGADGKD--H 310
              +L D++    R      RG++     +F       G++ ++     + G  G+    
Sbjct: 239 TLCELLDAVGIQYRVNPRLVRGLDYYNRTVFEWVTTSLGSQGTVLAGGRYDGLVGQLGGK 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                 + +G  R+V  ++E+            +AP ++ +      D    +   K+  
Sbjct: 299 DTPAVGFAMGLERIVL-LLETLG------LNQDIAP-EVDVYVTAMGDSCLVE-AFKVAQ 349

Query: 371 RLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRE 427
            L +   G  V     G  +  Q   AD  G    +I+G   +++++V IK  R    +E
Sbjct: 350 ELRQALPGLKVMSHCGGGNVKKQMKRADKSGAAYAIIIGENELANNQVAIKPLRNNNQQE 409

Query: 428 DMSLEEVINYASHRF 442
            ++ + +    S   
Sbjct: 410 LVARDALAETISALI 424


>gi|325298934|ref|YP_004258851.1| glycyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318487|gb|ADY36378.1| glycyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 514

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 122/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD + K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 202 EMGSTADGSMKVYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 261

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K   + L+    LG      R           H+  
Sbjct: 262 MREFEQMEMQFF-VKPGTELEWFKKWKETRLKWHKALGFGDDHYR----------YHDHE 310

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I       +     +H+   FD  
Sbjct: 311 KLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 345

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +V+ +
Sbjct: 346 QH------------------EKFSGKSIKYFDPEINESYTPYVIETSIGVDRMFLSVMSA 387

Query: 332 SHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  +          +  P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 388 SYTEEKLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIMDDL-KFHFHCQYD 445

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ ++ N  + + 
Sbjct: 446 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMEQERVAIADLNNIIADKV 504

Query: 443 S 443
           S
Sbjct: 505 S 505


>gi|41407150|ref|NP_959986.1| histidyl-tRNA synthetase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|46396582|sp|P60917|SYH_MYCPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|41395501|gb|AAS03369.1| HisS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 420

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 137/434 (31%), Gaps = 43/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
               KG+  ++P        V + + +   R G  ++ +P  +   L+        D   
Sbjct: 4   FSAPKGVPDYVPPDSAQFVAVRSGLLDAARRAGYGDIELPIFEDTALFARGVGESTDVVS 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 64  KEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGTLPVKLCYAGPFFRYE-RPQAG-- 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 121 RYRQLQQVGVEAIGVDDPALDAEVIAVADA---GFRSLGLDGFRLEITSLGDDSCRPQYR 177

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  +F+   D  E     ++      +  +  +   + +   ++    +  A       
Sbjct: 178 ELLQDFLFGLDLDEETRRRARLNPLRVLDDKRPEVRAMTADAPVLLDHLSDAAKQHFDTV 237

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
               D+L     ++ R             E  H    G +  +     + G         
Sbjct: 238 LAHLDALGVPYVINPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRQLGGQD 296

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +    +G+G  R + A+  E    G       S A   +  + +    ++       + A
Sbjct: 297 LSGIGFGLGVDRTLLALRAEGKSVG-------SAARCDVFGVPLSDQAKLRLAV---LAA 346

Query: 371 RLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            L   G  V   +   G + G+    AD  G  + +++G + +    V +K   TG +  
Sbjct: 347 GLRAAGVRVDMAYGARGLK-GAM-RAADRSGARIALVLGDRDIDAGTVGVKDLQTGSQVS 404

Query: 429 MSLEEVINYASHRF 442
           + L+ V+     + 
Sbjct: 405 VELDSVVAEVLSQL 418


>gi|116748863|ref|YP_845550.1| seryl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|166223302|sp|A0LI63|SYS_SYNFM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116697927|gb|ABK17115.1| seryl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 423

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  +G      + A + +    R G  E+  P + ++   + +G+   + +++ +L DR
Sbjct: 164 LYWKMGAALERALIAFMLDIHTKRHGYTEVLPPFIVNSTSLLGTGQLPKFKEDLFKLEDR 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T+I  +       LP  +      FR E     +   G++R  +F
Sbjct: 224 D---FYLVPTAEVPVTNIHMNETLEESELPKLYTAFTPCFRSEAGSYGKDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +     + PE S     K+ +   RI   LGL    +   +G +G   +     E  
Sbjct: 281 NKVELVKL-VKPESSYEELEKLLLDAERILQELGLHYRVVTLCTGDMGFSSAKTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           +       ++    +F DF     N  F
Sbjct: 340 LPGQNTYREISSCSNFEDFQARRANIRF 367


>gi|54309341|ref|YP_130361.1| putative threonyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|46913777|emb|CAG20559.1| putative threonyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 325

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD       L L    +   S G+  W   G      +   IRE+
Sbjct: 227 KLLKAHLTRLEEASKRDHRTIGEHLDLF--HMQHESPGMVFWHHNGWTIFRELQLFIREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
             +    E+  P +    LW  S  +D Y   M      
Sbjct: 285 LTKYEYQEVKGPLMMDRVLWERSSHWDKYAHAMFTTCSE 323


>gi|217316839|gb|ACK37825.1| putative glutamyl-prolyl tRNA synthetase [Eualus gaimardii]
          Length = 134

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  +  +  Y    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQVCRD---ACEKIYARLSKVGCDVFWDDMGE 386
           G++ P  VA  +  ++     +K  DQ   D   AC K+   L   G     D    
Sbjct: 74  GLVLPPRVAVIQAVVVPVGITVKTTDQERADIYNACTKLTEELKAHGVRARNDLRDH 130


>gi|313115472|ref|ZP_07800937.1| glycyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622182|gb|EFQ05672.1| glycyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 473

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 121/369 (32%), Gaps = 66/369 (17%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +       P T + +  +       + R LPF   Q+   FR+E+ P  
Sbjct: 152 MFKTAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F       +      + +Y + +       LG+K   +R      
Sbjct: 212 FTFRTREFEQMECEFFCKPGTDLE------WFAYWKDYCENWLLSLGIKKEHLRLRD--- 262

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                HE   LA       F S+   D       TD+ ++  +          +   S  
Sbjct: 263 -----HEPAELA-------FYSRATTDIEYAFPFTDWGELWGIADRTNYALTRHQEASGK 310

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             E       E+         +G       + +L         +         S G   +
Sbjct: 311 SLEYFDSETNEHYIPYVIEPSLGC-----DRVALAFLCEAYDEEH-----LTDSKGKEDI 360

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R V            +    ++AP+K +++ +        +   +I   LSK    V +D
Sbjct: 361 RTV------------LHLHPALAPYKCAVLPLSKK---LGEKAMEIRNELSKY-FMVDYD 404

Query: 383 DMGEQIGSQFAVADLLGFPLQVIV-----GSKF---VSDSKVEIKHRLTGIREDMSLEEV 434
           D G  IG ++   D +G P  + V     G +     +D+ V ++ R T  +  M + E+
Sbjct: 405 DTG-SIGKRYRREDEIGTPYCITVDFDTVGDEAKGIAADNCVTVRDRDTMEQVRMPISEL 463

Query: 435 INYASHRFS 443
             Y   +  
Sbjct: 464 KAYIESKIE 472


>gi|167629223|ref|YP_001679722.1| seryl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|238687865|sp|B0TAQ9|SYS_HELMI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167591963|gb|ABZ83711.1| seryl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 422

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 12/203 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    V  ++ +   + G  E+  P L +    + +G+   + ++M  +A       
Sbjct: 168 LGARLERAVINLMMDTHAQRGYTEVLPPYLVNRQSMLGTGQLPKFAEDMFAVA---GTDY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++ + I     LP         FR E     R   G++R  +F   + 
Sbjct: 225 YLIPTAEVPVTNLYTNEILDADKLPIHHCAYSACFRAEAGAAGRDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S     K+      I   LGL    +   +G +G   +     E  + +  
Sbjct: 285 VKF-TRPENSYDELEKLTKDAEHILQLLGLPYRVITLCTGDMGFSAAKTYDIEVWLPSFG 343

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +F DF     N  F
Sbjct: 344 AYREISSCSNFEDFQARRANIRF 366


>gi|323342095|ref|ZP_08082328.1| glycyl-tRNA synthetase beta subunit [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464520|gb|EFY09713.1| glycyl-tRNA synthetase beta subunit [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 457

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 119/366 (32%), Gaps = 72/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +    A+   P   + M   +R+  +S  + LPF   QI   FR+E+ P  
Sbjct: 150 MFKTFQGVTEDTSNAIYLRPETAQGMFVNYRNVQRSMRKKLPFGIAQIGKSFRNEITPGQ 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +         +   + +  +  +        IG  + 
Sbjct: 210 FIFRTREFEQMELEFFVKPGEDLE---------WYEYWKKFAMDWL--------IGLGIK 252

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L +  E ++                 +    S       W            +  
Sbjct: 253 PENLRLREHDEDELSH---------------YSKGTSDIEYRFPWGFDELWGIADRTDYD 297

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+ +VS   ++                        + +        +G  R++ A
Sbjct: 298 LKQHQEHSKVSMEYLDP--------------------ETNEKYIPYCVEPSLGVERLMLA 337

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCD 378
           +I  ++D + +         +   +AP ++ ++ +     +  R+   K+          
Sbjct: 338 LICEAYDEEELENDTRVVMHFSPKLAPTQVCVLPLSKKLSEPAREIMHKLMGSF-ACDF- 395

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
               D    IG ++   D +G P  +      + D KV +++R +  +  +S++E I   
Sbjct: 396 ----DETASIGKRYRRQDAIGTPFCITFDFDSLEDEKVTLRYRDSMEQVRVSVDEAIALM 451

Query: 439 SHRFSN 444
           +   + 
Sbjct: 452 NAEINK 457


>gi|39935910|ref|NP_948186.1| seryl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|192291558|ref|YP_001992163.1| seryl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|67461786|sp|Q6N5X5|SYS_RHOPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229890230|sp|B3Q6H9|SYS_RHOPT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|39649764|emb|CAE28286.1| seryl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|192285307|gb|ACF01688.1| seryl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 434

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 94/293 (32%), Gaps = 65/293 (22%)

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G  E++ P L   D    + +   + ++           +     PT E  +T++ R 
Sbjct: 189 DHGYTEVNPPLLVKDDAMFGTAQLPKFREDQFAAGAIGSGGEGYWLIPTAEVSLTNLVRE 248

Query: 121 HIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            I   + LP     +   FR E     R   G++R  +F   +  S   TPE SK  + +
Sbjct: 249 SILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI-TTPEQSKDEHER 307

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           M      +  RLGL    M   +G +G      + +               +  P   E 
Sbjct: 308 MLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIE--------------VWMPGQGEG 353

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             + +I S +                                            G   + 
Sbjct: 354 GAYREISSCSV------------------------------------------CGDFQAR 371

Query: 297 PMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
            M A  +G+DGK  +V  +   G    R + AVIE+     G I  PD + P+
Sbjct: 372 RMDARSRGSDGKPRFVHTLNGSGTAVGRALIAVIENYQQEDGSIAVPDVLQPY 424


>gi|116617315|ref|YP_817686.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272484|sp|Q03ZQ9|SYS_LEUMM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116096162|gb|ABJ61313.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 435

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 100/308 (32%), Gaps = 69/308 (22%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R+   N     
Sbjct: 178 GARLERAVYNFMLDEHRQEGYTEMITPIVVNDSAMFGTGQYPKFQDDAYRVEGLN---QT 234

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 235 YIPTAEVPLTNYYSGEELPSEDLPIKFTALSPSFRKEAGSAGKDTRGLIRLHQFNKVEMV 294

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F   PE S     KM +    I  +L L    +   +G +G   +  + +         
Sbjct: 295 KF-TKPEDSYEELEKMTLDAENILQKLNLPYHVIVLSTGDMGFSAAKTYDIE-------- 345

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                                     +       Y   S V N + F +   +       
Sbjct: 346 --------------------------VWMPQQNVYREISSVSNTEDFQARRMH------- 372

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGII- 339
                              T++ AD K   V  +   G+   R VAA++E+  +  G + 
Sbjct: 373 ------------------ITYRDADNKLQLVHTLNGSGLAVGRTVAAILENYQNEDGSVT 414

Query: 340 WPDSVAPF 347
            P+ + P+
Sbjct: 415 IPEVLRPY 422


>gi|227431355|ref|ZP_03913408.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352948|gb|EEJ43121.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 435

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 100/308 (32%), Gaps = 69/308 (22%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R+   N     
Sbjct: 178 GARLERAVYNFMLDEHRQEGYTEMITPIVVNDSAMFGTGQYPKFQDDAYRVEGLN---QT 234

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 235 YIPTAEVPLTNYYSGEELPSEDLPIKFTALSPSFRKEAGSAGKDTRGLIRLHQFNKVEMV 294

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F   PE S     KM +    I  +L L    +   +G +G   +  + +         
Sbjct: 295 KF-TKPEDSYEELEKMTLDAENILQKLNLPYHVIVLSTGDMGFSAAKTYDIE-------- 345

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                                     +       Y   S V N + F +   +       
Sbjct: 346 --------------------------VWMPQQNVYREISSVSNTEDFQARRMH------- 372

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGII- 339
                              T++ AD K   V  +   G+   R VAA++E+  +  G + 
Sbjct: 373 ------------------ITYRDADNKLQLVHTLNGSGLAVGRTVAAILENYQNEDGSVT 414

Query: 340 WPDSVAPF 347
            P+ + P+
Sbjct: 415 IPEVLRPY 422


>gi|157813072|gb|ABV81281.1| putative bifunctional aminoacyl-tRNA synthetase [Triops
           longicaudatus]
          Length = 134

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      ++  + ++       S+GI   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEILYEDPETQEKKFVFQNSWGIT-TRTIGVMIMVHGDNQ 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++          A      +AC++    L++ G  V  D       
Sbjct: 74  GLVLPPHVACVQVVIVPCGITASMSDADRSALLEACKEYEKTLAEAGIRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|114570456|ref|YP_757136.1| seryl-tRNA synthetase [Maricaulis maris MCS10]
 gi|122315709|sp|Q0AND9|SYS_MARMM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|114340918|gb|ABI66198.1| seryl-tRNA synthetase [Maricaulis maris MCS10]
          Length = 425

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 13  ENPRDAEIASHKLM-LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMS 70
           +  + AEI+  + + LR G+                     +   + +      G  E+S
Sbjct: 152 DFKKAAEISGSRFVALRGGLAR---------------LERALAQFMLDLHTTEHGYEEVS 196

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +   +    +G+   + +++ R  D +       PT E  +T++ R  I +  +LP 
Sbjct: 197 PPYMVRDEAVFGTGQLPKFAEDLFRTTDDH----WLIPTAEVPLTNLARETIHAEADLPM 252

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
                   FR E     R   G++R  +F   +  S  +TP+ S     +M     ++  
Sbjct: 253 RMTAYTPCFRSEAGSAGRDTRGMIRLHQFQKVEMVSI-VTPDESDAELERMTGCAEKVLQ 311

Query: 187 RLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            L L    M+  +G +G         E  + +     ++       DF     +  F
Sbjct: 312 LLELPYRVMKLCTGDMGFAARRTYDLEVWMPSQDCYREISSCSTCGDFQARRMDARF 368


>gi|50122141|ref|YP_051308.1| histidyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|81693156|sp|Q6D277|SYH_ERWCT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|49612667|emb|CAG76117.1| histidyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 424

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 135/439 (30%), Gaps = 51/439 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRAGIEHGILYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M   + RI   LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAELILMTARWWRI---LGIAD-HVKLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E  V   +   D                    +                  D  
Sbjct: 173 ARARYREALVAFLEQHKDQLDEDCLRRMYTNPLRVLDTKNPQIQVLLNDAPVLTDYLDDE 232

Query: 272 PENKRVS------------------ARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
                 +                   RG++     +F       G + ++     + G  
Sbjct: 233 SRAHFETLGELLTQSGIPYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMV 292

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRD 363
                H      + +G  R+V  V   + D K      + +     LI+  A  Q     
Sbjct: 293 EQLGGHATPAVGFAMGLERLVLLVQSVNPDFK------AQSGVDAYLISSGAGTQIAAMQ 346

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L ++     +     +   QFA AD  G  + +++G   V+  +V +K+   
Sbjct: 347 LAEKLRDALPQLKLMTNYGGGNFK--KQFARADKWGARVALVLGENEVAAGQVVVKNLSN 404

Query: 424 GIREDMSLEEVINYASHRF 442
           G ++ ++  +V +  +   
Sbjct: 405 GEQDTLAQADVASRLATLL 423


>gi|162452821|ref|YP_001615188.1| hypothetical protein sce4545 [Sorangium cellulosum 'So ce 56']
 gi|229558733|sp|A9F907|SYH_SORC5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|161163403|emb|CAN94708.1| hisS [Sorangium cellulosum 'So ce 56']
          Length = 428

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 134/422 (31%), Gaps = 24/422 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW--VESGRYDSYGK 91
           +  +G+   LP   +    +    R      G  E+  P L+  +L+        D   K
Sbjct: 4   RAVRGMNDILPEEVERWHKLEGAFRLHAELHGYAEVRTPLLEPTELFRHQMGETTDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    +R+   +   P         +  H    +     +Y +   FR E RP  G  R
Sbjct: 64  EMYSF-ERHGDHLTVRPEGTAGAARAYVEHAVHAKEPVTRWYYLGPMFRGE-RPAKG--R 119

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEF 210
            R+F       F                       R+G+    +   S G  G    +  
Sbjct: 120 YRQFYQAGCELFGDPGPLCDAET---IDLVAGFLQRIGVGEFVVHVNSLGSAGTRERYRE 176

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            +LA     +   S+D       +     D     +  V +         D  +   +D 
Sbjct: 177 ALLAHYTPRKAELSEDSQRRLEKNPLRILDSKDQRDHEVSRDAPSILDLLDDADRAHWDG 236

Query: 271 LPEN------KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-----GKDHYVQMGSYGI 319
           +           V  R +  G  +Y  T + +  +A   GA      G  +   +   G 
Sbjct: 237 VRRCLDVLGVNYVVDRSLVRGLDYYTRTLFEVKATAGDLGAQSTLAGGGRYDAMVAGLGG 296

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            ++  +   +      + +      +P +     +    Q   D    +  +L  +G  V
Sbjct: 297 PSVPAIGFAMGM---ERLLTMMPGASPRRRPGCFLAPLGQSGADQALVLAKQLRALGVPV 353

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D  G ++ +    AD LG  L VI+G   +    ++IK  +  ++E++ LE      +
Sbjct: 354 ELDGRGGRLKAMLRRADSLGARLCVILGDAEIERGVLQIKDLVAHVQEEIPLEGAARVLA 413

Query: 440 HR 441
            R
Sbjct: 414 DR 415


>gi|166077796|gb|ABY80992.1| glutamyl-prolyl tRNA synthetase [Paramysis intermedia]
 gi|166077798|gb|ABY80993.1| glutamyl-prolyl tRNA synthetase [Paramysis intermedia]
 gi|166077800|gb|ABY80994.1| glutamyl-prolyl tRNA synthetase [Paramysis intermedia]
          Length = 145

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTAPDKKQYVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   +       A E++   L         D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDEEKLALIKAAEQLQKELVDGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|297616225|ref|YP_003701384.1| seryl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144062|gb|ADI00819.1| seryl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 423

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 12/192 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    + + + +   ++ G  E+  P + +AD  V +G+   + ++M ++     + 
Sbjct: 168 LGARLERALISFMLDLHVDKHGYREVFPPFMVTADCMVGTGQLPKFAEDMFKV---EGRE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+++R  I +   LP         FR E     R   G++R  +F   +
Sbjct: 225 LYMVPTAEVPLTNLYREEILAAEQLPMYLTAYTACFRAEAGSHGRDTRGIIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI---VLADT 216
                 +PE S     K+      +   LGL    M   +G +G   +  +     L   
Sbjct: 285 LVKI-TSPETSYEELEKLTRDAEEVLQLLGLPYRVMLLCTGDMGFSSAKTYDLEVWLPSY 343

Query: 217 GETQVFCSKDFM 228
           GE +   S    
Sbjct: 344 GEYKEISSCSNC 355


>gi|332828261|gb|EGK00973.1| glycyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 511

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 113/363 (31%), Gaps = 70/363 (19%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 200 EMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 259

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F    E                                        E  
Sbjct: 260 MREFEQMEMQFFVRPGE----------------------------------------ELE 279

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   ET+    K             F D   L       T           E      
Sbjct: 280 WFAKWKETR---MKWHKALGYGDHKYRFHDHDKLAHYANAATDIEFEMPFGFKEVE---- 332

Query: 272 PENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV---- 325
                    GI     F      +YS      F     K +   +    IG  R+     
Sbjct: 333 ---------GIHSRTDFDLSSHEQYSGKKLQYFDPELNKSYTPYVIETSIGVDRMFLSTM 383

Query: 326 -AAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            AA  E   +G      +  P ++AP K++++ +   D    +  ++I   L K      
Sbjct: 384 SAAYCEEELEGGESRVVLKLPAALAPIKLAVLPLIKKD-GLPEKAQEIIDNL-KFDFKCQ 441

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+  + IG ++   D +G P  V V  + + D+ V I++R T  +E ++++ + +  + 
Sbjct: 442 YDE-KDSIGKRYRRQDAIGTPYCVTVDHQSLEDNTVTIRYRDTMEQERVAIDRLADIIAD 500

Query: 441 RFS 443
           + S
Sbjct: 501 KVS 503


>gi|330446670|ref|ZP_08310322.1| histidyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490861|dbj|GAA04819.1| histidyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 422

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 146/438 (33%), Gaps = 50/438 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +++  +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGTVKQVISAYGYNEIRMPIVESTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIQNGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG   +    
Sbjct: 122 YRQFHQVGVEVFGLNGPDIDAELIMM---TARLWRELGIHE-HVRLELNSIGSLEARAEY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N    +I+     + ++  P +    
Sbjct: 178 RKALIAFLEQHLDVLDEDAKRRMYTNPLRVLDTKNAAIQEILVDAPKLSEYLDPESKEHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFYFGTKYSLPMSATFKGA----------D 306
               +L D+     +      RG++     +F + T+ SL    T  G            
Sbjct: 238 DGLCELLDAAGIKYQVNERLVRGLDYYNRTVFEWITE-SLGAQGTVCGGGRYDGLVEQLG 296

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK        + +G  R+V  ++  + +   +          + +  + A  +    A  
Sbjct: 297 GKATPSV--GFAMGLERLV--LLMEALEQDEVR-------RSVDVYVVTAG-EGTLAAGM 344

Query: 367 KIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +  +L     G  V     G     QF  AD +G  + +++G   ++++ V +K    G
Sbjct: 345 TLAEKLRTEVSGLRVMTHFGGGNFKKQFKRADNVGAAVALVLGENEIAENTVVVKDLHGG 404

Query: 425 IREDMSLEEVINYASHRF 442
            +  M+ +EV    +   
Sbjct: 405 EQTTMAQDEVAAKLAALI 422


>gi|313906170|ref|ZP_07839518.1| glycyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313469009|gb|EFR64363.1| glycyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 465

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 120/366 (32%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      +  Y R F    L S+          G   
Sbjct: 215 FTFRTREFEQMELEFFCEPGTDLE------WFQYWRTFCHNWLTSL----------GLKD 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E  +     E   F SK   DF                  +  +            +  
Sbjct: 259 EELRLRDHAPEELAFYSKATTDFE----------------FLFPFGWGELWGVADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E                            F  +  + +   +    +GA RVV A
Sbjct: 303 LGRHQEVSGQDM--------------------TYFDDSKNEKYIPYVIEPSLGADRVVLA 342

Query: 328 VIESSHDGKGI-----------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            + +++D + +            +  ++AP K +++ +        ++ EK++  LS   
Sbjct: 343 FLCAAYDEEVLDAEKNDVRTVMHFHPALAPVKAAVLPLSKK---LGESAEKVFDMLSSK- 398

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  +DD G  IG ++   D +G P  +        D  V I++R T  +E + +E++  
Sbjct: 399 FNCEYDDRGA-IGKRYRRQDEIGTPFCITYDFDSEEDHAVTIRNRDTMEQERVKIEDLEK 457

Query: 437 YASHRF 442
           +   +F
Sbjct: 458 WFEGKF 463


>gi|183222581|ref|YP_001840577.1| histidyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912616|ref|YP_001964171.1| histidyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|229558692|sp|B0SH39|SYH_LEPBA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558693|sp|B0SQQ4|SYH_LEPBP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|167777292|gb|ABZ95593.1| Histidine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781003|gb|ABZ99301.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase; HisRS)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 437

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 127/437 (29%), Gaps = 40/437 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   + P   +  + + +++++     G  E   P ++S DL+      +  GK++   
Sbjct: 12  KGTRDFYPEDMRLRNYLFSVMKDVVRSYGYEEYDGPMVESLDLYRAKTGEEIVGKQIYNF 71

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ D+ +   P     +  +    ++     P  ++ I   +R E  P  G  R RE  
Sbjct: 72  IDKGDREVAIRPEMTPTVARMVAKKLR-ELPRPIRWFSIPNLWRYEQ-PGHG--RLREHW 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-------------AESGPIG 203
             +   F +T   ++     +      I    G      +              +   + 
Sbjct: 128 QLNVDMFGVTSSRAELE---ILSLACDILFAFGAPKNSFKVTISHRSLLDEFLLDGLKVS 184

Query: 204 GDLSHEFIVLADTG------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            + +HE   + D        E     +K   +        D     ++NS+ +       
Sbjct: 185 PNQAHEVSKILDKKNKITQDEYVALVTKTIPNDSSAVSKIDLFLNATVNSLNQIPGIKEE 244

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             + +              +      V   F + T +             K      G Y
Sbjct: 245 TLAAIKGLFEDIKTIGLSDIIHFDPSVVRGFDYYTGFI--FEIFDTSPQNKRSLYGGGRY 302

Query: 318 ----GIGAMRVVAAVIESSHD---GKGII---WPDSVAPFKISLINIKAHDQVCRDACEK 367
               G+ +   +  +     D      +       + A      I +        +    
Sbjct: 303 DNLIGLFSNEELTGIGFGLGDVTLQNFLTAHNLLPNFASDTTVFIPLLDDSSFAEN--HN 360

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
               L K         + +++G Q + A+  G+   ++ G   +  + V +K   +  + 
Sbjct: 361 FAKELRKEKISAEVSLVSQKMGKQLSYAEKKGYRWILLRGEDEIKTNTVTLKDMASRNQF 420

Query: 428 DMSLEEVINYASHRFSN 444
             S  E +       S 
Sbjct: 421 TFSFSEALQKIKEELSK 437


>gi|193214281|ref|YP_001995480.1| seryl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|238692702|sp|B3QV79|SYS_CHLT3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|193087758|gb|ACF13033.1| seryl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 427

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 77/230 (33%), Gaps = 20/230 (8%)

Query: 14  NPRDAEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGA 66
            P+D       L    GM+           G   ++  G      +   + +    + G 
Sbjct: 140 KPKDHIELGKSL----GMLDFERGAKIAGAGFPLYIGKGASLERALINFMLDLHLEKHGY 195

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P   + D    +G++  +  ++  +   ND  +   PT E  +T++ R  +   +
Sbjct: 196 KEVFPPFFVNRDSLRGTGQWPKFADQVYYM---NDDDIYAIPTAEVPVTNMHRDEMLQSK 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  +      FR E     +   G +R  +F   +   F L PE S      +     
Sbjct: 253 ELPIKYAAYSACFRREAGSYGKDTKGFLRVHQFNKVEMVKFVL-PETSYDELEALLGDAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVL-ADTGETQVFCSKDFMDFP 231
            +   L +    +   SG I  + +  + +      E +   +    +F 
Sbjct: 312 DVLKALEIPYRVLLLCSGDISANAAKCYDIEVWSPAEEKFLEASSCSNFE 361


>gi|7676162|sp|O26346|SYH_METTH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 425

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 146/437 (33%), Gaps = 49/437 (11%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEML 94
            +G   +L    +    V  ++R      G  E+  P  +   L+ V+SG  +    ++ 
Sbjct: 6   PRGTRDFLFAEMRNRKEVEGVLRRTFETYGYHEIKTPIFEELKLFTVKSG--EEVVNQIY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + +   P     +  ++ + ++  +  P   Y     FR E RP+ G  R R+
Sbjct: 64  HFTDKGGRELALRPELTAPVARLYMNEMQK-KPKPIKMYYFGSCFRYE-RPQAG--RFRQ 119

Query: 155 FLM------------KDAYSFDLTPEGSKHSYN---KMFVSYLRIFH-RLGLKSIPMRAE 198
           F               +A    L  E          ++ + +L I    LG + IP   +
Sbjct: 120 FWQFGCELIGGRSPLAEAEVISLASESLHELGLDGFEVHIGHLGILRGILGREEIPSELQ 179

Query: 199 SGPIG-GDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
              +G  D      + A  GE +V   S++ +   I ++            +     +  
Sbjct: 180 DRIMGVIDKGDVEELEALLGEVEVSGESRELLMKLIGTQGGPEVLDDVEEYLGGYSESLE 239

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDHYVQ 313
           A        +       +      GI  G  +Y G     Y   + A  +   G  + + 
Sbjct: 240 ALEEFRELVETLHYFGVDDYHVNLGIARGLDYYTGIVFEIYVPELGAQKQICGGGTYNLV 299

Query: 314 MGSYGIGAM---------RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
               G             R++ A+     D + +          + +I I   D    +A
Sbjct: 300 ETFGGERVESTGFAFGFDRLMNALGM---DEENMRM------VDVFVIPI--QDSTVPEA 348

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I   L   G     +  G ++    + AD LG    V+ G + + D KV +K     
Sbjct: 349 I-RITQELRAAGVSADLEVSGRKLRKALSHADNLGARFAVLTGEREIQDGKVTVKDMERN 407

Query: 425 IREDMSLEEVINYASHR 441
            +E +  +E+++    R
Sbjct: 408 SQETLPRDEMVDKIKGR 424


>gi|332974398|gb|EGK11324.1| serine--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 432

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 13/207 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR---NDK 102
            +    +   +      + G  E  VP + ++D    +G+   + +++ +L +    +  
Sbjct: 170 AQLHRALIQFMLNTHTVKYGYTECYVPYIVNSDSLKGTGQLPKFEEDLFKLTNHTNNDGM 229

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                PT E  MT++ R        LP  F      FR E     R   G++R  +F   
Sbjct: 230 GFYLIPTAEVPMTNLVRGERLDASQLPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKV 289

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLA 214
           +  +   T   S     +M      I  +L L    ++  +G +G         E  + +
Sbjct: 290 EMVNI-ATAAQSDELLEQMTAQAEYILQQLELPYRVVKLCTGDMGFSALRTYDIEVWLPS 348

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDD 241
                ++    +  DF      T   D
Sbjct: 349 QDTYREISSCSNCGDFQARRMGTRVKD 375


>gi|222446040|ref|ZP_03608555.1| hypothetical protein METSMIALI_01689 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435605|gb|EEE42770.1| hypothetical protein METSMIALI_01689 [Methanobrevibacter smithii
           DSM 2375]
          Length = 564

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDG----KGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R+V +V+  S           +  SVAP ++ +  +  + +  R
Sbjct: 426 GEKIVPHVIEPSFGIDRIVYSVLLHSFKETDAKDYFKFAPSVAPVQVGIYPL-VNKEGPR 484

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  +L + G  V +D  G  IG ++A AD +G PL + V    + D+K+ +++R 
Sbjct: 485 EIAIEITDKLRESGFKVEYDVSG-TIGKRYARADEIGIPLAITVDFDSLEDNKITVRNRD 543

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +E ++++E+ +Y    + 
Sbjct: 544 SEAQERIAIDEIKDYLEEYYK 564



 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 63/195 (32%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESG------ 84
           I+    G   + PLG    +N+    R++     G  E+  PT+   ++   SG      
Sbjct: 22  IYSGVSGFTDYGPLGASLKNNIMQKWRKQYVSGEGFYEIEGPTVMPKEVLKASGHVDNFT 81

Query: 85  -------------RYDSYGKE--------------------------------------- 92
                        R D   +E                                       
Sbjct: 82  DPMTKCEECGEVFRADHIIEEVIGEDVESLENEELDQIVIDNAIKCSECGGKLSNIWNYN 141

Query: 93  -MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFG 148
            M +     + DK     P   + +  +F+   + +R  LPF   Q+   +R+E+ PR G
Sbjct: 142 LMFKTMIGAKGDKVGYMRPETAQGIFILFKRLERFFRGKLPFGVVQLGKAYRNEISPRQG 201

Query: 149 VMRSREFLMKDAYSF 163
           V+R REF   +A  F
Sbjct: 202 VIRLREFTQAEAEIF 216


>gi|167749878|ref|ZP_02422005.1| hypothetical protein EUBSIR_00846 [Eubacterium siraeum DSM 15702]
 gi|167657190|gb|EDS01320.1| hypothetical protein EUBSIR_00846 [Eubacterium siraeum DSM 15702]
          Length = 436

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 130/428 (30%), Gaps = 37/428 (8%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GR 85
           +  ++ +  +G    LP        V  I R      G  E+  PT +  +L+     G 
Sbjct: 10  KMELVTKKPRGTEDKLPKEIYKWHTVEKIARNVAEAYGCKEIRTPTFEHTELFQRGVGGT 69

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            D   KEM    D+  +++   P            +      LP   Y     FR E  P
Sbjct: 70  TDVVQKEMYTFNDKKGRSITLKPEGTAGAVRAVIENGLLNDALPLKTYYFTRCFRYEA-P 128

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------ 199
           + G  R REF       F      +      +      I   LG+K+I +   S      
Sbjct: 129 QSG--RLREFNQVGIEYFGTASPAADAE---VIALANDIIKSLGVKNISIEINSIGCPKC 183

Query: 200 GPIGGDLSHEFI-----VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                    E+       L  T   ++  +   +        + F     +         
Sbjct: 184 RAEYHKALKEYYSQYKDQLCGTCLERLDRNPMRLLDCKSEICSSFKKDAPMILDYLCDDC 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGA--DGKDH 310
                +      +         +  RG++     +F F +       A   G   +G   
Sbjct: 244 REHFENVKKRLDVLGVSYTVNPLIVRGLDYYTNTVFEFISNEIGSQGAVCAGGRYNGLVE 303

Query: 311 YVQMGS-----YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            +   S     + +G  R++  ++  +   +         P K   + I + D       
Sbjct: 304 EIGGNSVPGLGFAMGLERII--MVMENQKLEFE-------PEKKCDLYIASFDDETSIYA 354

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++  +L + G     D  G    +Q   A+ +G    +++G   ++    ++K    G 
Sbjct: 355 MELVQKLREEGFWAECDISGRSFKAQMKYANKIGATYCMVIGGDEMNTKSAKLKRMSDGT 414

Query: 426 REDMSLEE 433
              ++L++
Sbjct: 415 ETPVTLDD 422


>gi|152980660|ref|YP_001352847.1| seryl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166222735|sp|A6SX50|SYS_JANMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|151280737|gb|ABR89147.1| Seryl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 431

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 84/247 (34%), Gaps = 20/247 (8%)

Query: 17  DAEIASHKLMLRT-GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+    +    G    +  G  A     +   + +      G  E 
Sbjct: 133 DFEIRDHVDVGAALGLDFDVAAKITGSRFSVMKGGIARLHRALAQFMLDTHTAEHGYTEC 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             P + +AD    +G+   +  ++  +     +   +A+   PT E  +T+I R  I + 
Sbjct: 193 YTPYIVNADSLQGTGQLPKFEADLFAVKKGGQEGEGEALYLIPTAEVPLTNIVRDEIVAG 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP         FR E     R   G++R  +F   +     + PE S  + ++M    
Sbjct: 253 DALPIRMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQV-VHPEKSYEALDEMCGHA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I  +LGL    +   +G +G   +     E  + A     ++    +   F       
Sbjct: 312 ENILKKLGLPYRVITLCTGDMGFGATKTYDLEVWLPAQNTYREISSVSNCEAFQARRMQA 371

Query: 238 DFDDIIS 244
            F +   
Sbjct: 372 RFRNAQG 378


>gi|311745437|ref|ZP_07719222.1| glycine--tRNA ligase [Algoriphagus sp. PR1]
 gi|126577987|gb|EAZ82207.1| glycine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 488

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 118/367 (32%), Gaps = 70/367 (19%)

Query: 93  MLRLAD----RNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M          +   +   P T + +  +       +   +PF   QI   FR+E+  R 
Sbjct: 174 MFSTQVGSVAEDASTIFLRPETAQGIFVNFLNVQKTARMKVPFGIAQIGKAFRNEIVARQ 233

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      Y K                    AE+        
Sbjct: 234 FIFRMREFEQMEMQFF-VRPGTELEWYQK-------------------WAETRM------ 267

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
              + L  T E       + +     +      D       VE   +        H E  
Sbjct: 268 KWHLALGTTAEKLRKHDHEKLAHYANAAMDIEYDFPFGFKEVEGIHSRTDFDLKSHQE-- 325

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                     +S      F     K++   +    IGA R+   
Sbjct: 326 --------------------------FSKKKQQYFDPEVNKNYIPYVIETSIGADRLFLM 359

Query: 328 VIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + +++  +         + +  ++AP K +++ I   D    D  ++I   L K   ++
Sbjct: 360 TLCNAYTEEKTEEKSRTYLKFHPAIAPVKAAILPITKKD-GLPDKAKEIVDLL-KYDFNI 417

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +++    IG ++A  DL+G P  + V  + + D+ V I+HR T  +E + + E+    +
Sbjct: 418 IYEE-AASIGKRYARQDLIGTPFCIAVDHQTLEDNTVTIRHRDTTEQERVPISELHGRIA 476

Query: 440 HRFSNNR 446
              S  R
Sbjct: 477 EATSFRR 483


>gi|148653337|ref|YP_001280430.1| seryl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048529|sp|A5WFN9|SYS_PSYWF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148572421|gb|ABQ94480.1| seryl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 428

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 13/196 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-- 103
            +    +   +      + G  E  VP + ++D    +G+   + +++ +L +  +    
Sbjct: 170 AQLHRALIQFMLNTHTVKYGYTECYVPYIVNSDSLEGTGQLPKFEEDLFKLTNHTNNEAM 229

Query: 104 -MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                PT E  MT++ R        LP  F      FR E     R   G++R  +F   
Sbjct: 230 GFYLIPTAEVPMTNLVRGERLDASELPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKV 289

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLA 214
           +  +   T   S     +M      I  +L L    ++  +G +G         E  V +
Sbjct: 290 EMVNI-ATAAQSDELLEQMTGQAEYILQQLQLPYRVVKLCTGDMGFSALRTYDIEVWVPS 348

Query: 215 DTGETQVFCSKDFMDF 230
                ++    +  DF
Sbjct: 349 QDTYREISSCSNCGDF 364


>gi|325843420|ref|ZP_08167978.1| glycine--tRNA ligase [Turicibacter sp. HGF1]
 gi|325489342|gb|EGC91716.1| glycine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 457

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 123/371 (33%), Gaps = 77/371 (20%)

Query: 90  GKEMLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            + M +     ++D      +   T + +  +       S + +PF   QI   FR+E+ 
Sbjct: 146 FELMFKTHMGVVSDEKSAVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEIT 205

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P     R+RE                              F ++ L+             
Sbjct: 206 PGNFTFRTRE------------------------------FEQMELEFFC---------- 225

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                       GE   +             N      ++   I ++  +P   +   + 
Sbjct: 226 ----------KPGEDAKWYEFWKEYC----WNWLVSLGMNPEHIRQREHSPEELSHYSNG 271

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGA 321
               +           G+     F           A F+  D    + +        +GA
Sbjct: 272 TSDIEYRFPFGWGELWGVANRTDFDLKAHM-KESGANFEYQDPTTNEKYVPYCIEPSVGA 330

Query: 322 MRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            RV  A +  ++  + +          +  ++AP+K++++ +        +   +++A L
Sbjct: 331 DRVTLAFLVDAYAEETLENGETREVLKFHPALAPYKVAVLPLVKK---LNEQALEVFADL 387

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           SK    V +D+ G  IG ++   D +G P  VI     + D KV ++HR T  +E ++++
Sbjct: 388 SKHMM-VDYDEAG-TIGKRYRRQDAIGTPFCVIFDYDSLEDKKVTVRHRDTMEQERVAID 445

Query: 433 EVINYASHRFS 443
           E++ Y + +  
Sbjct: 446 ELVEYITSKIQ 456


>gi|297538111|ref|YP_003673880.1| histidyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297257458|gb|ADI29303.1| histidyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 436

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 137/443 (30%), Gaps = 56/443 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG Y  LP        +    R    + G   + +P ++S DL+V S     D   
Sbjct: 18  FQSIKGFYDILPEATPLWFKLEDTARRVLGQYGYKNIRMPLVESTDLFVRSVGEHTDIVE 77

Query: 91  KEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM    D  N   +   P               +Y N P   +     FR E       
Sbjct: 78  KEMYAWEDALNGDKLTLRPEGTAGCVRAVVESNLTY-NGPVRLWYSGAMFRHE---NVQK 133

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F      +F               V   R++  LG+  + ++  S  IG   +HE
Sbjct: 134 GRQRQFHQIGVEAFGFDSPQVDAE---QIVLLARLWRELGIADVELQINS--IGD--AHE 186

Query: 210 -----------FIVLAD-TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                      F   AD   E             + ++N     +      +        
Sbjct: 187 RLEYRKVLIAYFEQHADLLDEDAKRRLHTNPLRILDTKNPRMQAMCEAAPKLIDSLGDET 246

Query: 258 ATSDVHNEKLFDSLP---ENKRVSARGIEVG--HIF-----YFGTKYSLP----MSATFK 303
                   KL D+            RG++     +F       G + ++       A  +
Sbjct: 247 RAHFDGLCKLLDAAGVAYIVNARLVRGLDYYNRTVFEWVTTKLGAQGTIAGGGRYDALVE 306

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G         +GIG  RV   ++   +   G+   D  AP  + L+N+    +    
Sbjct: 307 RLGGDATPA--CGFGIGLERVF--LLMQEY---GVTADD--AP-DVYLVNVG---EQAEQ 353

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
               I  +L      V     G    SQ   AD       +I+G   V++ +V +K  L 
Sbjct: 354 VAFSIAEQLRNADIQVILHAGGGSFKSQMKKADRSQAKFALIIGDDEVANKQVTLKPMLA 413

Query: 423 --TGIREDMSLEEVINYASHRFS 443
              G ++  S+E+ I   +   +
Sbjct: 414 TVKGEQQQCSIEQAIENLTAALA 436


>gi|229823127|ref|ZP_04449196.1| hypothetical protein GCWU000282_00424 [Catonella morbi ATCC 51271]
 gi|229787293|gb|EEP23407.1| hypothetical protein GCWU000282_00424 [Catonella morbi ATCC 51271]
          Length = 426

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 12/201 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  E+  P + +      +G+Y  + ++  R+ 
Sbjct: 163 FVFYKGLGARLERAIYNFMLDTHTQHNGYQEIIPPYMVNDQSMFGTGQYPKFVEDTFRVN 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D  ++ +   PT E  +T+ + + I    NLP  F  +   FR E     R   G++R  
Sbjct: 223 D--ERGLTLIPTAEVPLTNYYANEILPLENLPIKFTALSPSFRSEAGSAGRDTRGLIRLH 280

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   +   P+ S      M  +   I   LGL    +   +G +G   +     E
Sbjct: 281 QFNKVEMVKY-AHPDHSFEELESMTQNAEGILQALGLPYRVITLCTGDMGFSATKTYDLE 339

Query: 210 FIVLADTGETQVFCSKDFMDF 230
             +       ++    +  DF
Sbjct: 340 VWIPGQDTYREISSCSNCGDF 360


>gi|226226315|ref|YP_002760421.1| glycyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226089506|dbj|BAH37951.1| glycyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 446

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 73/486 (15%), Positives = 133/486 (27%), Gaps = 123/486 (25%)

Query: 25  LMLRTGMIHQHS-----KG-IYSWLPLGQKALDNVNAIIREEQ-NRTGAIE-MSVPTLQS 76
           L  R G I Q S      G ++ + PLG +   N+              IE +    L  
Sbjct: 14  LCKRRGFIFQSSEIYGGTGSVWDYGPLGVELKKNIKDFWWNAMVRSRDDIEGLDAAILMH 73

Query: 77  ADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEE------------VMTDI 117
              W  SG    +   ++       R                             +   +
Sbjct: 74  PRTWEASGHVAGFTDPLVDCKQCKARFRADKMDPKKLEANVCPNCGNKGTLTEPRLFNLM 133

Query: 118 FRSHI-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFG 148
           F++H+                                + +PF   QI   FR+E+ P   
Sbjct: 134 FKTHMGALEESSSIVYLRPETAQGIFVNFLNVQQSMRQKVPFGIAQIGKAFRNEITPGNF 193

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R+REF   +   F                                       G D+  
Sbjct: 194 IFRTREFEQMEMQFFVEP------------------------------------GTDMEW 217

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                            +         + D           +      A  +    +  F
Sbjct: 218 ----------------FEQWKAKRMQWHFDLGLSPDRLKFHQHDAGELAHYARAAFDVTF 261

Query: 269 DSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D           GI     F      +YS      F   + K +   +    +GA RV  
Sbjct: 262 DFGGTLGDQEIEGIHNRGDFDLSQHQQYSGKKLEYFDQPNNKRYVPYVIETSVGADRVTL 321

Query: 327 AVIESSHDGKG----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           A + +++  +           +    S+AP K ++  +   D    +   +I   L    
Sbjct: 322 ATLVNAYREETVEGESEGRVVLGLKHSIAPIKAAIFPLTKKD-GQPEMANRIVDDLRSA- 379

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V +D+ G  IG ++   D +G P  V V  +   D  V ++ R T  ++ + + ++  
Sbjct: 380 FAVDYDETG-SIGKRYRRQDEVGTPFCVTVDGQSTGDQTVTVRDRDTLAQDRVDVSQLKG 438

Query: 437 YASHRF 442
           Y + + 
Sbjct: 439 YLAAKL 444


>gi|332162635|ref|YP_004299212.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606739|emb|CBY28237.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666865|gb|ADZ43509.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 450

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 134/438 (30%), Gaps = 55/438 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 32  QAIRGMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 91

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 92  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG        
Sbjct: 148 YRQFHQLGAEVFGLQGPDIDAE---LILLTARWWRALGISE-HVQLELNSIGS-----LD 198

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD  E  V   +  +D                    +                  D  
Sbjct: 199 ARADYREALVTFLEQHVDVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDDE 258

Query: 272 PENK------------------RVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
            +                        RG++     +F       G + ++     + G  
Sbjct: 259 SKQHFAGLCELLNQAGIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLV 318

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VC 361
               G+        + +G  R+V  V   + + K        A   + LI+     Q   
Sbjct: 319 EQLGGRATPAV--GFAMGLERLVLLVQAVNPEFKVP------ATIDVYLISSGEGTQSAA 370

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++   L  +     +     +   Q   AD  G  + +I+G   V+  +V +K  
Sbjct: 371 MQLAERVRDVLPTLKLMTNYGGGNFK--KQITRADKWGARVALILGESEVAAQQVVVKDL 428

Query: 422 LTGIREDMSLEEVINYAS 439
             G +E ++  +V    +
Sbjct: 429 RNGEQETLAQADVAARLA 446


>gi|284036607|ref|YP_003386537.1| glycyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283815900|gb|ADB37738.1| glycyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 502

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 111/350 (31%), Gaps = 62/350 (17%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R    R REF   +   F + P 
Sbjct: 198 TAQGIFVNFLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFTFRMREFEQMEMQFF-VRPG 256

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
              H Y     + ++    +GL                           E   F   + +
Sbjct: 257 TEMHWYETWRDARMKFHQAVGLP-------------------------AEKLKFHVHEKL 291

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                +             I  ++   +     +H+   FD     +    +        
Sbjct: 292 AHYANAA----------VDIEYKFPFGFREMEGIHSRTDFDLKAHQELSRKKQ------Q 335

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD----GKG------- 337
           YF           +       +   +    +GA R+  AV+ ++      G+G       
Sbjct: 336 YFDNDVDPATGKPYGN-----YIPYVVETSVGADRLFLAVLCNAFTKETVGEGDQQKERT 390

Query: 338 -IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +    ++AP K ++  +   D    +  E+I   L      V +++    IG ++   D
Sbjct: 391 YLKLHPALAPIKAAVFPLVRKD-GLPEKAEEIVKSLRSE-FRVVYEERDA-IGKRYTRQD 447

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           L+G P  + V  + + D  V I++R T  +  + + E+        S  R
Sbjct: 448 LIGTPFCIAVDYQTLEDDTVTIRYRDTTEQIRIPVSELKARIGQEVSMER 497


>gi|229048607|ref|ZP_04194165.1| Glycyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228722726|gb|EEL74113.1| Glycyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 458

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                +S
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MS 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|166077818|gb|ABY81003.1| glutamyl-prolyl tRNA synthetase [Paramysis agigensis]
          Length = 145

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDILFEDPTAPDKKQYVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDDERLALIKAAEQLQKELVEGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|88604151|ref|YP_504329.1| histidyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|121731779|sp|Q2FTC5|SYH_METHJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|88189613|gb|ABD42610.1| histidyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 408

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 137/440 (31%), Gaps = 63/440 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  +G    LP   +    + A +R      G  E++ P  +  +L+   SG  +  
Sbjct: 1   MIQK-PRGTRDMLPDEMERRREIEARMRARARLYGFREIATPVFEELELFTIRSG--EGI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             EM    D+  +++   P     +  ++    +S  N P  +      FR E RP+ G 
Sbjct: 58  INEMYVFEDKGGRSLALRPELTAPVLRMYVEEGRS-LNKPVKWCYFADCFRYE-RPQKG- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSKHS-----YNKMFVSYLRIFHRLG-LKSIPMRAESGPIG 203
            R R+F    A                  Y+ +  + +    R+G L  +         G
Sbjct: 115 -RYRQFWQFGAELIGADSAMGDAEVITLGYDLLRTAGVTFVLRIGHLSFMRTLLADLADG 173

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                   +     E  +   +D     +           +L  +         A     
Sbjct: 174 DKKKIRAFLDKREEEAAITYLRDIGRDDLCDPLIRLCGARTLEDVFAIIGEIPEAARVRE 233

Query: 264 NEKLFDSLPENKRV---SARGIEV--GHIFYFGTKYSLPMSAT--------------FKG 304
              + D+      +    ARG++   G +F     ++  + A               F G
Sbjct: 234 MFAILDASGIPYEINPAIARGLDYYTGVVFEC---FAEGLGAENQILGGGAYRLAHLFGG 290

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D          + IG  RV+ A+ E+S       W     P ++ +I         RD 
Sbjct: 291 ED-----TPSAGFAIGFDRVMVALGEAS-------WVPW-QP-QVMIITTNEG----RDY 332

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              I  +    G     D M     +Q       AD       VI+G   V    + +K 
Sbjct: 333 ALTIAGQFRMNGIITETDLMDRSFSAQMKAAGKSAD-----YAVIIGKDEVETGTITLKD 387

Query: 421 RLTGIREDMSLEEVINYASH 440
              G +E ++ +E I   + 
Sbjct: 388 LKAGTQEKITADEAIQKLTS 407


>gi|16329819|ref|NP_440547.1| seryl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501054|sp|P73201|SYS_SYNY3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|1652304|dbj|BAA17227.1| seryl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 430

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 12/212 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             S +  G      +   + E     G  E+  P L ++D  + +G+   + +E  +   
Sbjct: 171 FISLMKAGAALERALINFMLERHIGVGYQEIMPPILVNSDSLLGTGQLPKFAEESFQC-- 228

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T+++R  +     LP         FR E     R   G++R  +
Sbjct: 229 -RGDDLWLIPTAEVPVTNLYRDEVLDLEQLPIKHCAYTPCFRREAGSYGRDTKGLIRLHQ 287

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +     + PE S   +  +      I   L L    +   +G +G   +     E 
Sbjct: 288 FNKVELVKL-VKPEESAAEHQALVADAEAILQALELPYRVVELCTGDLGFGAAKCYDLEV 346

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            + +     ++    +F DF     N  + + 
Sbjct: 347 WLPSANTYREISSCSNFHDFQARRANIRYKEK 378


>gi|126658831|ref|ZP_01729975.1| seryl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126619929|gb|EAZ90654.1| seryl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 427

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L ++     +G+   + +E  ++ D +   + 
Sbjct: 176 GAALERALINFMLDQQIAAGYLEVMPPVLINSSALQGTGQLPKFAEESFKVPDDD---LW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++   I     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYSGEILEAETLPIKHCAFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+ ++ ++      I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KL-VHPETSEVAHQQLVNDAEAILQALKLPYRVLELCTGDLGFGATKCYDLEVWLPSSNS 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             ++    +  DF     N  F +     +    
Sbjct: 352 YREISSCSNCWDFQARRANIRFKEKGQKGTQYVH 385


>gi|327403982|ref|YP_004344820.1| glycyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327319490|gb|AEA43982.1| glycyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 512

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 114/335 (34%), Gaps = 48/335 (14%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F + P 
Sbjct: 219 TAQGIFVNFLNVQKSGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF-VRPG 277

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                YN    + L     LGL     R           H+ I LA         S    
Sbjct: 278 DEMKWYNHWKAARLAWHKALGLGDKYYR----------EHDHIKLAHYANAA---SDIEF 324

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           DFP+  +  +     +   + +              E   + +P           V    
Sbjct: 325 DFPMGFKELEGIHSRTDFDLKQHEQFSGKKLQYFDPELNQNYVPYV---------VETSV 375

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA+FK                         +E   +   +  P  +AP+K
Sbjct: 376 GLDRMFLAVMSASFKNEK----------------------LEDGSERAVLSLPAQLAPYK 413

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L +   +  +D+  +  G ++   D +G P  V+V  
Sbjct: 414 VAIMPLTKKD-GLPEKATEILNDL-RFDFNCQYDE-KDSPGKRYRRQDAIGTPYCVMVDH 470

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V I+ R T ++E +++ E+      + S
Sbjct: 471 QTLEDNTVTIRDRDTMLQERVAISELRAKIDEKVS 505


>gi|206969645|ref|ZP_03230599.1| glycyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218231344|ref|YP_002369706.1| glycyl-tRNA synthetase [Bacillus cereus B4264]
 gi|228955177|ref|ZP_04117187.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229072398|ref|ZP_04205601.1| Glycyl-tRNA synthetase [Bacillus cereus F65185]
 gi|229082160|ref|ZP_04214625.1| Glycyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229147466|ref|ZP_04275814.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|229153102|ref|ZP_04281282.1| Glycyl-tRNA synthetase [Bacillus cereus m1550]
 gi|229181212|ref|ZP_04308543.1| Glycyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|296505357|ref|YP_003667057.1| hypothetical protein BMB171_C4529 [Bacillus thuringiensis BMB171]
 gi|206735333|gb|EDZ52501.1| glycyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218159301|gb|ACK59293.1| glycine--tRNA ligase [Bacillus cereus B4264]
 gi|228602266|gb|EEK59756.1| Glycyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228630368|gb|EEK87017.1| Glycyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228636011|gb|EEK92493.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228701152|gb|EEL53673.1| Glycyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228710721|gb|EEL62693.1| Glycyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228804518|gb|EEM51127.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|296326409|gb|ADH09337.1| hypothetical protein BMB171_C4529 [Bacillus thuringiensis BMB171]
          Length = 458

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                +S
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MS 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|152977206|ref|YP_001376723.1| glycyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025958|gb|ABS23728.1| glycyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 458

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG+    MR           
Sbjct: 211 FTFRTREFEQMELEFFCKPGEEL-EWFTFWRETCKNWLLSLGMNEDSMR----------- 258

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                L D GE ++                 + +  +       +            +  
Sbjct: 259 -----LRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGIASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSSEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGAREVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+ ++  
Sbjct: 395 DYDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKSFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|332071196|gb|EGI81691.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
          Length = 429

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 142/444 (31%), Gaps = 57/444 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D           DF D  S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 246 NSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSA 300
             +                D +  +  D            IE   +    G +Y   + A
Sbjct: 235 AHVDAVRQMLENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGRY-DGLVA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G +          +G+G  R++  +     + +G+  P   A   + +  +     V
Sbjct: 294 YFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAVLGDGANV 342

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L + G     D +  ++ +QF  AD+      + +G   V   +V +K+
Sbjct: 343 ---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFVAKTLITLGESEVESGQVTVKN 399

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             T     +SLE +    S  F  
Sbjct: 400 NQTREEVQVSLEIISKNFSEIFEK 423


>gi|298369230|ref|ZP_06980548.1| serine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283233|gb|EFI24720.1| serine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 431

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMKGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D + K     PT E  +T+     I +  
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKKTQYLIPTAEVTLTNTVADSIVAGS 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|299822822|ref|ZP_07054708.1| histidine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816351|gb|EFI83589.1| histidine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 430

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 133/443 (30%), Gaps = 48/443 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        +     E        E+  P  +  +L+        D   K
Sbjct: 4   QLPRGTRDILPEEVAKWHFLERSFEEICTDYQYQEIRTPIFEHTELFERGVGDSTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D+  +++   P     +   F  H      N P   Y     FR E RP+ G  
Sbjct: 64  EMYTFEDKGGRSLTLRPEGTASVVRAFVEHKMFGSPNQPNKLYYKGPMFRYE-RPQGG-- 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS--- 207
           R R+F      +              +    +  F ++GL +   +     +G   S   
Sbjct: 121 RQRQFHQMGIEALGSYDPAIDVE---VITLVMHFFQKIGLSN--TKLVINSLGDKESRLR 175

Query: 208 -------------HEFIVLAD----TGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIV 249
                         EF             ++   K   D P + S  +  D +   ++  
Sbjct: 176 HREALIAHFEPRIDEFCADCQNRLYKNPLRILDCKKDHDHPLVQSAPSILDYLNEASTAY 235

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGA--- 305
                 Y     +  E     +      +    E+  +   FG K +L     + G    
Sbjct: 236 FDKVKSYLDAVGLDCEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVQE 295

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG +       +GIG  RV+ A+     +   +I P+        +I       V    
Sbjct: 296 FDGPETPGI--GFGIGVERVLLAL-----EKAEVIIPEE-KALACYVITAGEGTAV---K 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              I   L + G     D    ++  Q   AD       +IVG + ++    ++K   +G
Sbjct: 345 AMSIMNTLRQQGISAEKDYQDRKLKGQLKDADRKNALFTIIVGEEELASGVYKLKDMKSG 404

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            +  ++ + +    S +    + 
Sbjct: 405 EQTAIAEDAIAATISKKLQTLKE 427


>gi|119471074|ref|ZP_01613633.1| histidine tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119445914|gb|EAW27195.1| histidine tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 426

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 139/438 (31%), Gaps = 48/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +    V  I+RE     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAVRGMNDCLPGDTQIWQKVENILRETVASFGYQEIRFPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRN   +   P    V       +   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADRNGDLLTLRPEGTAVCVRAGNQNGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F      +F +           + +   +++   G+    +R E   +G + +    
Sbjct: 122 YRQFHQFGLETFGIATADIDAE---VILLTAQLWKAFGISE-HVRLELNSLGSNEARADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   I+     + +     +    
Sbjct: 178 RDALVAYLEQHTDVLDEDSKRRMYSNPLRVLDSKNPDVQAILVDAPKLSEHLDAESKEHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
            +  +  D+   +        RG++     +F       G + ++     + G      G
Sbjct: 238 ENLCERLDAAGVSYTVNEKLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K       + G+  + ++   +E   D +            + L  +     +       
Sbjct: 298 KATPAVGFAMGLERLVLLLQALECVGDIRRNA--------DVYLAAMGDKASIQ---API 346

Query: 368 IYARLSK--VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG 424
           I + L +   G  V     G     Q   AD     + VI+G   +    V IK+ R   
Sbjct: 347 IASELRRDVAGLRVMVHAGGGNFKKQLKRADKSDALVAVIIGEDELEQGVVTIKYLRERK 406

Query: 425 IREDMSLEEVINYASHRF 442
            +  + LE+     +   
Sbjct: 407 EQVTLKLEQAKALLAELI 424


>gi|15965285|ref|NP_385638.1| seryl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|307307875|ref|ZP_07587600.1| seryl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|307317049|ref|ZP_07596490.1| seryl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|30173198|sp|Q92Q22|SYS_RHIME RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|15074465|emb|CAC46111.1| Probable seryl-tRNA synthetase (serine--tRNA ligase) [Sinorhizobium
           meliloti 1021]
 gi|306897137|gb|EFN27882.1| seryl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306901491|gb|EFN32094.1| seryl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 427

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G IE+  P L   D    +G+   +  ++
Sbjct: 160 AGSRFTILKGQLARLERALGQFMLDLHTGEHGYIEVQPPLLVRDDAMYGTGQLPKFSDDL 219

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            R  D         PT E  +T++ R  I     LP  F  +   FR E     R   G+
Sbjct: 220 FRTTD----GRWLIPTAEVPLTNMVREQILDGEKLPLRFTALTPCFRSEAGSAGRDTRGM 275

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GD 205
           +R  +F   +  S     E S   + +M      +  RLGL    M   +G +G      
Sbjct: 276 LRQHQFNKVELVSI-TDAESSIDEHERMTACAEEVLKRLGLHYRVMTLCTGDMGFGARKT 334

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E  +       ++       DF     N  +
Sbjct: 335 YDLEVWLPGQDAYREISSCSVCGDFQARRMNARY 368


>gi|321441339|gb|ADW85084.1| glu- + pro-tRNA synthetase [Tineola bisselliella]
          Length = 134

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIYDDPETQEKKYVFQNSWGLT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHD-----QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++   I A+      +  +++CE++  +L   G     D       
Sbjct: 74  GLVLPPRVAAVQVIVVPCGITANSTAEDRENLKESCEELVKKLVDAGVRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|166077790|gb|ABY80989.1| glutamyl-prolyl tRNA synthetase [Paramysis lacustris]
 gi|166077792|gb|ABY80990.1| glutamyl-prolyl tRNA synthetase [Paramysis sowinskii]
 gi|166077794|gb|ABY80991.1| glutamyl-prolyl tRNA synthetase [Paramysis sowinskii]
          Length = 145

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  +V   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTSPDKKQFVYQNSWGLT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDDERLALIKAAEQLQKELVEGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|67924802|ref|ZP_00518201.1| Histidyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
 gi|67853344|gb|EAM48704.1| Histidyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
          Length = 426

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 125/437 (28%), Gaps = 42/437 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q   G    LP        V  +  +  +R    E+  P  +   L+    G   D  GK
Sbjct: 5   QTPPGTKDILPEEIGYWQYVETVATQILSRAMYYEIRPPIFEQTSLFERGIGEATDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR D+++   P     +   +  +           +     FR E RP+ G  R
Sbjct: 65  EMYTFRDRGDRSLTLRPEGTAGVVRAYLQNNLYAAGGVKRLWYFGPMFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------ 199
            R+F              +      +      I   LGL+S+ +   S            
Sbjct: 122 QRQFHQIGLELIGTGDPRADVE---VIALATDILKTLGLQSLKLDINSVGDRNDRQNYRE 178

Query: 200 ------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                  P   +L  +     +    ++  SK      I        + +   S      
Sbjct: 179 ALVNYFLPYKEELDPDSQDRLEKNPLRILDSKAKRTKEINENAPSILEYLGDASKKHFDQ 238

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                                     RG++  +        S  + A      G  +   
Sbjct: 239 VQQLL-------TDLGIEYNINPCLVRGLDY-YTHTAFEIISDDLGAQATVCGGGRYDGL 290

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS--LINIKAHDQVCRDACEKIYAR 371
           +   G      V   I      + II    + P   +   I + +  +        +  +
Sbjct: 291 VEELGGNPTPAVGWAIGM---ERLIILLKKLQPSPQTSPDIYVVSRGEAAEAQGLLLAQK 347

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D  G   G QF  AD  G    +++G +   +  V++K   +  ++ M+ 
Sbjct: 348 LRAEGLTVELDMSGSAFGKQFKRADRSGAIACLVLGEEEAVNQTVQLKWLQSKEQQTMTQ 407

Query: 432 EEVINYA---SHRFSNN 445
            E+ N       + + +
Sbjct: 408 SELFNQVGELKEQLNRH 424


>gi|160943130|ref|ZP_02090367.1| hypothetical protein FAEPRAM212_00610 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445599|gb|EDP22602.1| hypothetical protein FAEPRAM212_00610 [Faecalibacterium prausnitzii
           M21/2]
          Length = 473

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 121/369 (32%), Gaps = 66/369 (17%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +       P T + +  +       + R LPF   Q+   FR+E+ P  
Sbjct: 152 MFKTAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
              R+REF   +   F              + +Y + +       LG+K   +R      
Sbjct: 212 FTFRTREFEQMECEFFCKPGTDLD------WFAYWKDYCENWLLSLGIKKEHLRLRD--- 262

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                HE   LA       F S+   D       TD+ ++  +          +   S  
Sbjct: 263 -----HEPAELA-------FYSRATTDIEYAFPFTDWGELWGIADRTNYDLTRHQEASGK 310

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             E       E+         +G       + +L         +         S G   +
Sbjct: 311 SLEYFDSETNEHYIPYVIEPSLGC-----DRVALAFLCEAYDEEH-----LTDSKGKEDI 360

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R V            +    ++AP+K +++ +        +   +I   LSK    V +D
Sbjct: 361 RTV------------LHLHPALAPYKCAVLPLSKK---LGEKAMEIRNELSKY-FMVDYD 404

Query: 383 DMGEQIGSQFAVADLLGFPLQVIV-----GSKF---VSDSKVEIKHRLTGIREDMSLEEV 434
           D G  IG ++   D +G P  + V     G +     +D+ V ++ R T  +  M + E+
Sbjct: 405 DTG-SIGKRYRREDEIGTPFCITVDFDTVGDEAKGIAADNCVTVRDRDTMEQVRMPISEL 463

Query: 435 INYASHRFS 443
            +Y   +  
Sbjct: 464 KSYIESKIE 472


>gi|293391766|ref|ZP_06636100.1| histidyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952300|gb|EFE02419.1| histidyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 425

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 143/436 (32%), Gaps = 42/436 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +R      G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTETPLWQWVENKVRSVLQAYGYAEIRMPIVESTPLFARAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR+D+++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMFTFNDRDDESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F +           +     R++  LG+    +  +   IG   + +  
Sbjct: 122 YRQFHQVGVEIFGIPNPEIDAE---LIALTARLWKDLGIFD-HVTLQLNSIGSLEARKNY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S++     +++    +  +    +    
Sbjct: 178 RQALVAFLQNHLDILDEDSKRRLTTNPLRILDSKDQRVQQVLNDAPKLHDYLDEESREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKD 309
                L D+L       +   RG++     +F       G + ++     + G       
Sbjct: 238 AQLCALLDNLGIKYEINQKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR-DACEKI 368
           H      + +G  R+V  V E +   K I  P +V    I ++       V      EK+
Sbjct: 298 HATAGVGFAMGLERLVLLVQEVN---KHITLPSAV---DIYIVYQGEGTTVAAFSLAEKL 351

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IRE 427
            + L            G     QF  AD  G  L +++G   V + +V +K  L    + 
Sbjct: 352 RSELP--HLRTLLHCSGGNFKKQFKRADKSGAKLALVIGEDEVKNQQVVVKELLQHSEQV 409

Query: 428 DMSLEEVINYASHRFS 443
            ++L ++  +  + F 
Sbjct: 410 VVALSDITTHIQNTFK 425


>gi|301109960|ref|XP_002904060.1| glycyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262096186|gb|EEY54238.1| glycyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 487

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 117/358 (32%), Gaps = 70/358 (19%)

Query: 93  MLRL----ADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           + R      D     +   P   +     F +      + LPF   Q+   FR+E+ P  
Sbjct: 174 LFRTNMGATDETCDWIYLRPETAQGAYINFANVQSTMRKKLPFGIGQVGKSFRNEISPGH 233

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P  S   Y            + G+K                
Sbjct: 234 FLFRTREFEQLELQFF-THPNESDDWYLYWVDQCYDFLTKYGIKP--------------- 277

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +   +    ++                   DI              A  +    +K 
Sbjct: 278 -ENLRKHEHAPEELAHYAR-----------ATTDIQFKYPFGWSELWGIANRTSYDLKKH 325

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVA 326
            D+  +                         S T++    K+ +   +    +GA RV+ 
Sbjct: 326 MDASGK-------------------------SLTYQDLVAKEEFLPHVIEPALGAGRVML 360

Query: 327 AVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +++  ++D +         +     +AP++ +++ +    +   D  +K++  L      
Sbjct: 361 SMLLDAYDEEEVNGRERTVLRLHPDIAPYRFAVLPL-VKKEPLLDVAQKLFEDLCGS-AS 418

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           V +D  G  IG ++   D +G P+ + V    + D  V ++ R +  ++ + +E+++ 
Sbjct: 419 VDYDVTG-SIGRRYRRQDEIGTPMCLTVDFDTLEDKCVTVRDRDSMEQKRVPIEQILQ 475


>gi|238763551|ref|ZP_04624512.1| Histidyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238698183|gb|EEP90939.1| Histidyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 424

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 136/446 (30%), Gaps = 71/446 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LILLTARWWRALGISE-HVQLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD  E  V   +  +D                    +                  D  
Sbjct: 173 ARADYREALVTFLEQHVDVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDDE 232

Query: 272 PENK------------------RVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
            +                        RG++     +F       G + ++     + G  
Sbjct: 233 SKQHFAGLCELLDQASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLV 292

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G+        + +G  R+V  V   + D +        A   + LI+     +  +
Sbjct: 293 EQLGGRATPAV--GFAMGLERLVLLVQAVNPDFQVP------ATIDVYLISSG---EGAQ 341

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQI-------GSQ--FAVADLLGFPLQVIVGSKFVSD 413
            A  ++  RL         D    ++         +     AD  G  + +I+G   V+ 
Sbjct: 342 SAAMQLAERLRD-------DLPTLKLMTNYGGGNFKKQITRADKWGARIALILGESEVAA 394

Query: 414 SKVEIKHRLTGIREDMSLEEVINYAS 439
            +V +K    G +E ++  +V    +
Sbjct: 395 QQVVVKDLRKGEQETLAQADVAARLA 420


>gi|237748955|ref|ZP_04579435.1| seryl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229380317|gb|EEO30408.1| seryl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 436

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 87/253 (34%), Gaps = 20/253 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D E+  H  +    G+  + +    G    L  G  A     +   + + Q    G  E 
Sbjct: 133 DFEVKDHVDVGTPLGLDFETATKLTGARFCLMRGNMARLHRALAQFMLDLQTTEHGYTEC 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             P + +AD    +G+   + +++        +   + +   PT E  +T+  R  I S 
Sbjct: 193 YTPYMANADSLYGTGQLPKFAEDLFAARKGGQEGEGENLYLIPTAEVTLTNTVRGEILSA 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP         FR E     R   G++R  +F   +     + PE S  +  +M  + 
Sbjct: 253 EQLPVKLTAHTPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQV-VHPEKSYEALEEMVKNA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
            R+  +LGL    +   +G +G   +     E  + A     ++    +   F       
Sbjct: 312 GRVLEKLGLPYRVVSLSTGDMGFSAAKTYDLEVWLPAQNTYREISSVSNCEAFQARRMQA 371

Query: 238 DFDDIISLNSIVE 250
            F +      +V 
Sbjct: 372 RFRNDKGRPELVH 384


>gi|254168570|ref|ZP_04875413.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289595732|ref|YP_003482428.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197622404|gb|EDY34976.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289533519|gb|ADD07866.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 415

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 141/438 (32%), Gaps = 51/438 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           M+ +  +G     P   +A   V   I       G  E+  P+++  DL+  +SG  +  
Sbjct: 1   MLQRL-RGFRDMYPEYMRARRIVFDKICSVARSFGFHEVDTPSVELLDLFRIKSG--EEI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K+     D+  + +   P     ++ +  +     +  P  ++     +R E  P+ G 
Sbjct: 58  VKQTFSFVDKGGREITLIPELTPSVSRMIAARKDLIK--PVKWFSFPKMWRYEE-PQSG- 113

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI------- 202
            R REF   +A  F +    +      +    + I   LGLK   +   S  I       
Sbjct: 114 -RLREFYQFNADIFGVANITADAE---VMALAMEILDSLGLKGKYVMKFSDRILMEELLR 169

Query: 203 -----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  + +   I   D    + F  +        + ++    +     +    +    
Sbjct: 170 SLNIEKIEEAFRIIDKKDKIPEERFYEEMLKITSEENVDSLISLLKLSGDVDTILSKFEH 229

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                    L D L    + +   + +      G  Y   +      A+G+   V  G  
Sbjct: 230 FERSEILASLKDLLKAYGKTATLDLSIVR----GLAYYTGVVFEVHDANGEFRAVLGGGR 285

Query: 318 GIGAMRVVAA-------------VIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCR 362
               + +  A             V+E     +G +WP+        I++I         R
Sbjct: 286 YDRVVELFGAQPTPAVGFGMGDAVLELLMRREG-VWPEEKIEVDYFIAIIP------GFR 338

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   L + GC V  D     IG Q   A  +     +IVG   + + +V +K   
Sbjct: 339 KEAIEIAMELRRSGCVVDIDLSRRSIGKQLKYAHRINAKYTIIVGE-EIKNGEVALKDME 397

Query: 423 TGIREDMSLEEVINYASH 440
           +G + ++ + E+      
Sbjct: 398 SGEQRNVKIGELKEVIEK 415


>gi|307294312|ref|ZP_07574156.1| seryl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306880463|gb|EFN11680.1| seryl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 425

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 14/202 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + + Q+   G  E++ P L   D    +G+   + +++ R  D       
Sbjct: 171 ARLHRALAQFMLDRQSGENGYEEVNPPLLVKDDALFGTGQLPKFAEDLFRTTD----GRW 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I    +LP     +   FR E     R   G +R  +F   +  
Sbjct: 227 LIPTAEVSLTNLVRERIVPVDSLPLRLTALTPCFRSEAGSAGRDTRGFIRQHQFEKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL----SHEFIVLADTG 217
           +    PE S+  + +M  +   +   LGL    M   +G +G         E  + +   
Sbjct: 287 AI-CKPEESEAEHERMCAAAEGVLQALGLPYRKMLLCTGDMGFGARKTWDLEVWLPSQQT 345

Query: 218 ETQVFCSKDFMDFPIPSENTDF 239
             ++    +  DF     N  +
Sbjct: 346 YREISSVSNCGDFQARRMNARY 367


>gi|260459791|ref|ZP_05808045.1| seryl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259034593|gb|EEW35850.1| seryl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 434

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 11/210 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   N  G  E+  P +   ++   + +   + +++      + + +   PT
Sbjct: 181 RAIGQFMLDLHTNEHGYEEIIPPLMVRDEVLFGTNQLPKFEEDLFFTQHGDGR-LGLIPT 239

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I ++  LP  +  +   FR E     R   G++R  +F   +  S   
Sbjct: 240 AEVPLTNLVREEITAHEKLPLRYTALTPCFRSEAGSAGRDTRGMLRQHQFYKVELVSI-T 298

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 299 DQESSLAEHERMTQCAEEVLKRLGLPFRTMVLCTGDMGFGARKTYDIEVWLPGQNAYREI 358

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  DF     +  + D     +    
Sbjct: 359 SSCSVCGDFQARRMDARYKDKDGKGNRFVH 388


>gi|326692251|ref|ZP_08229256.1| seryl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 436

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R+      A  
Sbjct: 179 GARLERAVYNFMLDEHRQEGYTEMITPIVVNDTAMFGTGQYPKFQDDAYRV---EGLAQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYAGETIPSEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F   PE S      M  +   I  +LGL    +   +G +G   +     E  +     
Sbjct: 296 KF-TKPEQSYAELASMTANAENILQKLGLPYHVVMLSTGDMGFSAAKTYDIEVWMPQQKV 354

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     +  + D   
Sbjct: 355 YREISSVSNTEDFQARRMHITYRDDND 381


>gi|300717950|ref|YP_003742753.1| Histidyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299063786|emb|CAX60906.1| Histidyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 424

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 146/445 (32%), Gaps = 61/445 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETVVWQRIEQILKQVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R +  LG+    ++ E   IG   +    
Sbjct: 122 YRQFHQMGVEVFGLQGPDVDAELIMM---TARWWKALGISE-HVKLELNSIGSLEARTNY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   +++    + ++    +    
Sbjct: 178 RDALIAFLEQHQDVLDEDCKRRMYTNPLRVLDSKNPDIQALLNAAPELSEYLDAESREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               +L DS        +   RG++     +F       G++ ++     + G      G
Sbjct: 238 AGLCELLDSAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCGGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +             P +I  + + A  Q  + A  +
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN---------PEFEPTRIVDVYVIASGQGVQSAAMQ 346

Query: 368 IYARLSKVGCDVFWDDMGEQI-------GSQ--FAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  ++          D   ++         +  FA AD  G  + +++G   V++ +V I
Sbjct: 347 LAEQIRDA-------DPTLKLMTNFGGGNFKKQFARADKWGARVALMLGEDEVANGQVTI 399

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           K    G ++ ++  +     +    
Sbjct: 400 KDLRNGEQQTLAQRDAAATLAAMLK 424


>gi|311741374|ref|ZP_07715198.1| glycyl-tRNA synthetase beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303544|gb|EFQ79623.1| glycyl-tRNA synthetase beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 459

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/462 (15%), Positives = 154/462 (33%), Gaps = 66/462 (14%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVE 82
           L+ + G I+  S+  + + PLG +  +N+         +     + +    +Q   +WV 
Sbjct: 17  LVYQAGEIYGGSRSAWDYGPLGVELKENIKRQWWRHMVQSRADVVGVDTSVIQPRQVWVS 76

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT-FYQIQLKF-- 139
           SG  + +      L +       Y   H      +  ++ + + + P      I      
Sbjct: 77  SGHVEVFSD---PLVESRHTGKRYRADH------LIEAYEEKHGHEPENGLADINDPETG 127

Query: 140 ----RDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                 E +   G++++    + D      L PE ++  +            R+      
Sbjct: 128 QPGDWTEPKAFSGLLKTFLGPVDDEQGLHYLRPETAQGIFVNFKNVMTS--SRMKPPFGI 185

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                  IG    +E         T+ F   +   F  P E+ ++      +        
Sbjct: 186 A-----NIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDDRYNWYVDL 240

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT 301
                +    E   +   +    S R ++V + F F              T Y L + A 
Sbjct: 241 GIKEENLRLYEHPKE---KLSHYSKRTVDVEYAFGFKGSKWGELEGVANRTDYDLSVHAK 297

Query: 302 FKGAD-------GKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIW 340
             G D        ++ +   +     G  R + A +  ++D +              +  
Sbjct: 298 GSGEDLSYYDQANEERWIPYVIEPAAGLGRSMMAFLVDAYDEEEAPNAKGGTDKRVVLRL 357

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP K++++ +   ++   +   K+  +L +   +V +D  G  IG ++   D +G 
Sbjct: 358 DRRLAPIKVAVLPLSKKEE-LSEPARKLADKL-RAHWNVDFDVSGA-IGRRYRRQDEIGT 414

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           P  V      + D  V ++ R T  +E + L+++  Y + R 
Sbjct: 415 PFCVTFDFDTLEDDAVTVRERDTMEQERVKLDDLEAYLAARL 456


>gi|332797142|ref|YP_004458642.1| threonyl-tRNA synthetase editing domain-containing protein
           [Acidianus hospitalis W1]
 gi|332694877|gb|AEE94344.1| threonyl-tRNA synthetase editing domain protein [Acidianus
           hospitalis W1]
          Length = 385

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 11/169 (6%)

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQM--GSYGIGAMRVVAAVIES-SHDGKGIIWPDS 343
           + YFG K  L     FK +       +   G   I    ++  ++            P  
Sbjct: 217 VIYFGEK-QLDFPKEFKDSKNSLKIWESKDGKTTIWVGNLIYYILLQAKSMSTTPYLPLW 275

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           ++P  + L+ +K       +  E+   +L   G  V  D+  + +G++   + +   P  
Sbjct: 276 ISPIHVRLLPVKKD---FLEKTEEFANQLLSKGVRVEIDNKDDGLGNKIRRSGMDWIPYV 332

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR----FSNNRPV 448
            IVG + +  S + ++ R    ++ ++++E+              N PV
Sbjct: 333 AIVGEREIKTSTLTVRIRKKDEQKSLTVDELYALIKDEDPLMLRQNTPV 381


>gi|323358281|ref|YP_004224677.1| glycyl-tRNA synthetase (class II) [Microbacterium testaceum
           StLB037]
 gi|323274652|dbj|BAJ74797.1| glycyl-tRNA synthetase (class II) [Microbacterium testaceum
           StLB037]
          Length = 462

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/462 (15%), Positives = 161/462 (34%), Gaps = 52/462 (11%)

Query: 20  IASHK-LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           +A H+  + + G I+  S+  + + PLG +  +N+     +   R     + +    +  
Sbjct: 13  LARHRGFVFQAGEIYGGSRSAWDYGPLGTELKENIRRQWWQTFVRGRGDMVGLDSSVILP 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG   ++   ++     + +        E+      R       ++P      +
Sbjct: 73  KRVWEASGHVATFTDPLVECLHCHKRFRA-DNLIEDFEARKGRKAENGLADVPCPNCGTK 131

Query: 137 LKFRDELRPRFGVMRSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
            ++  E +   G++++    +  ++  + L PE ++     +FV++  +           
Sbjct: 132 GQY-TEPKSFSGLVKTYLGVVDDESGLYFLRPETAQ----GIFVNFSNVLTA---SRRKP 183

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
               G +G    +E         T+ F   +   F  P+E  ++ +              
Sbjct: 184 PFGVGQVGKAFRNEITPGNFIFRTREFEQMEIEYFTPPAEANEWFEHWVEACWNWFIDLG 243

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT- 301
               +    +   D   +    SA  I+V + F F              T Y L   +  
Sbjct: 244 IDPENMKRFDVPED---DRAHYSAGTIDVEYRFGFPGKEWGELMGVANRTDYDLKSHSEA 300

Query: 302 -------FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWP 341
                  F  A G+ +   +     G  R + A +  S+  +              +   
Sbjct: 301 SGQSLTFFDQASGEKYTPYVIEPSFGLTRAMMAFLVDSYREEEVPNAKGGTDTRTVLKLD 360

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP K++++ + + ++       +    L   G ++ +DD G  IG ++   D +G P
Sbjct: 361 PRLAPVKVAVLPL-SRNERLSPLARETADTLRAAGWNIDFDDAGA-IGRRYRRQDEIGTP 418

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V V    + D+ V ++ R T  +E + L+ +  Y + R  
Sbjct: 419 FCVTVDFDSLDDNAVTVRDRDTMGQERIGLDALHGYLAERLR 460


>gi|269836498|ref|YP_003318726.1| glycyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269785761|gb|ACZ37904.1| glycyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 469

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 121/371 (32%), Gaps = 77/371 (20%)

Query: 93  MLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M R      + +       P   + +   +R+ ++S R  +PF   QI   FR+E+ P  
Sbjct: 155 MFRTFLGPVEASGTQAFLRPETAQAIFLDYRNVLQSSRVKIPFGIAQIGKAFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R  EF   +   F + PEG +  + +   +    F  +GL                 
Sbjct: 215 FIFRLLEFEQMEIEYF-IRPEGWEPVFEEWLDAMQAFFRFIGL----------------- 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                    GE ++   +   D                            +         
Sbjct: 257 ---------GEARLRQREHGPD--------------------------ELSHYSKRTVDF 281

Query: 268 FDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
               P   +    G+     F      +YS      F  A G+     +    +G  R++
Sbjct: 282 EYEFPFGWKELC-GLAYRTDFDLRRHQEYSGVDLTYFDQATGERFLPHVVEPTMGVERLM 340

Query: 326 AAV-IESSHDGKG------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            A+ +++ H+               + +   +AP+K +++ +    ++      +++  L
Sbjct: 341 LALMVDAYHEEDAVDVAGKPYRRVVLRFHPRMAPYKAAVLPLMKKPELV-AKANEVWDLL 399

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +      +D+  + IG ++   D +G P  V +    + D  V I+ R +  +  + + 
Sbjct: 400 -RPEFPTDYDET-QSIGRRYRRQDEIGTPFCVTIDYDTLEDDSVTIRDRDSMEQVRVPIA 457

Query: 433 EVINYASHRFS 443
           E++     R  
Sbjct: 458 ELVPTLRERLE 468


>gi|186684160|ref|YP_001867356.1| seryl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|238689425|sp|B2J6K8|SYS_NOSP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|186466612|gb|ACC82413.1| seryl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 426

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 77/204 (37%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   +     + G +E+S P L + +    +G+   + +E  + AD +   + 
Sbjct: 175 GAALERALIQFMLTLHTQAGYLEVSPPLLVNTESLTATGQLPKFAEESFKCADDD---LW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  +LP         FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILAAEDLPIYHCAFTPCFRREAGSYGRDMRGLIRLHQFNKVEMV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F + P  S     K+  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 292 KF-VEPSTSFDELEKLVGNAEAILQALRLPYRVVNLSTGDLGFASTKTYDLEVWLPSSGK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    + +DF     +  F +
Sbjct: 351 YREISSCSNTIDFQARRADIRFKE 374


>gi|314923081|gb|EFS86912.1| glycyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
          Length = 506

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/398 (14%), Positives = 123/398 (30%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 166 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 219

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 220 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVE-------------- 265

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                P   +  H++ + A T             +     N D 
Sbjct: 266 ---------------------PGTDEEWHQYWIDARTA-----------WYTDLGINPDN 293

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 294 LRHYEHPKEKLSHYSKRTVDVEYKFGFTGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 351

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 352 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 408

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  V
Sbjct: 409 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCV 465

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V ++ R T  ++ +S+++V  Y   R 
Sbjct: 466 TVDFDTLEDDAVTVRERDTMAQQRVSIDKVEEYLGGRL 503


>gi|118444233|ref|YP_877921.1| histidyl-tRNA synthetase [Clostridium novyi NT]
 gi|166227963|sp|A0PZW9|SYH_CLONN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118134689|gb|ABK61733.1| histidyl-tRNA synthetase [Clostridium novyi NT]
          Length = 416

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 136/433 (31%), Gaps = 45/433 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP+       +   +++        E+  P  +  +L+        D 
Sbjct: 1   MAIQAPKGTKDLLPMDSYKWHYIEDKLKKLAAEYALKEIRTPAFEHTELFERGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++   P         F  +      LP   +     FR E      
Sbjct: 61  VQKEMYTFKDKGDRSITLKPEGTAPAARAFIENGLFNEALPIKMFYFTPVFRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPI 202
             R RE        F  T          +    +R F    + ++          E    
Sbjct: 118 KGRLREHHQFGVEVFGSTEASVDAE---LIGLAMRAFKEFRIDNLELNINNIGCPECRKK 174

Query: 203 GGDLSHEFIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             D   E+   +  +  +T     +      +  +N    +I     ++  +     +  
Sbjct: 175 YNDALREYFRESYDELCDTCKTRFERNPMRLLDCKNKKCKEIGKDAPVILDYVCDDCSNH 234

Query: 261 DVHNEKLFDSLPENKR---VSARGIEVGHIFYF-----------GTKYSLPMSATFKGAD 306
             + +   DSL    +      RG++      F           G +Y    +   +   
Sbjct: 235 FENLKTYLDSLNIKYKVNPYIVRGLDYYTKTVFEIINNDITVCGGGRY----NGLIEQIG 290

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK        +G+G  R++  ++E++     I  P    P ++ +      D    +   
Sbjct: 291 GKPTPAV--GFGMGIERLILTLMENN-----IEIPK---PKEMDIFIGSMGDNGKIE-AF 339

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L   G     D M + + +Q   A+ +     +I+G   + + K  +K    G +
Sbjct: 340 KLVNALRTKGLKAECDHMNKSVKAQMKYANKIDASYSMIIGDTEIEEKKANLKRMEDGQQ 399

Query: 427 EDMSLEEVINYAS 439
            ++SL  +   AS
Sbjct: 400 FEVSLNNLDEIAS 412


>gi|229014104|ref|ZP_04171225.1| Glycyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|229169638|ref|ZP_04297340.1| Glycyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228613834|gb|EEK70957.1| Glycyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228747058|gb|EEL96940.1| Glycyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 458

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEDELSH---------------YSNATTDIEFRFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|154496166|ref|ZP_02034862.1| hypothetical protein BACCAP_00450 [Bacteroides capillosus ATCC
           29799]
 gi|150274721|gb|EDN01785.1| hypothetical protein BACCAP_00450 [Bacteroides capillosus ATCC
           29799]
          Length = 472

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 120/362 (33%), Gaps = 57/362 (15%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D + +  +   T + +  +       + + LPF   Q+   FR+E+ P  
Sbjct: 156 MFKTHQGVTEDSSTEVYLRPETAQGIFVNFQNIQRTTRKKLPFGVCQVGKSFRNEITPGN 215

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F       +      + +Y R +    L ++ ++ E+  +     
Sbjct: 216 FIFRIREFEQMELEFFCQPGTDLE------WFAYWRQYCHDWLTNLNIKDENLRLRDHEP 269

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    +         +     FP            +   + +         +    EK 
Sbjct: 270 EELAFYS------KATTDFEFMFPFGWGELWGVADRTDYDLKQHQEHSGKDMTYFDQEKN 323

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +P     S  G +   + +               A+  D    M             
Sbjct: 324 EHYVPYVIEPSL-GADRVTLAFL----VEAYDEEVVDAEKNDVRTVM------------- 365

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                       +  ++APFK +++ +         A +++YA LSK    V +D+ G  
Sbjct: 366 -----------RFHPALAPFKCAVLPLSKK---LGPAAQEVYAELSKY-FMVDYDEAG-S 409

Query: 388 IGSQFAVADLLGFPLQV-----IVGSKFV-SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           IG ++   D +G PL V      VG +   +D  V ++ R T  +  + ++++  Y   +
Sbjct: 410 IGKRYRRQDEIGTPLCVTVDFQTVGDENTPADHCVTVRDRDTMEQVRLPIDQLKAYIEEK 469

Query: 442 FS 443
            +
Sbjct: 470 IA 471


>gi|262305713|gb|ACY45449.1| glu- + pro-tRNA synthetase [Ctenolepisma lineata]
          Length = 134

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+ G   + G  +S      ++  + K+       S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGGTSHHLGQNFSKMFEIVYEDPETKEKKYVFQNSWGLT-TRTIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHDQVCRDA-CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA F++ ++       +   D+      CE++   L +    V  D       
Sbjct: 74  GLVIPPRVANFQVVIVPCGITVNLSEDDRNNLQKSCEQLEKELLEAEVRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|313637739|gb|EFS03099.1| histidyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 427

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 141/442 (31%), Gaps = 46/442 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        + A            E+  P  +  +L+        D   K
Sbjct: 2   QLPRGTRDILPEEVTKWHFLEAAFAAVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSK 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVM 150
           EM    D+  +++   P     +   F  H        P      +  FR E RP+ G  
Sbjct: 62  EMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGAVSQPIKXXXNEPMFRYE-RPQGG-- 118

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS--- 207
           R R+F      +              +    +  F R+GL++I +   S  +G   S   
Sbjct: 119 RQRQFTQMGIEAIGSDDPAIDVE---VISLAVEFFKRIGLRNIKLVINS--LGDKESRLK 173

Query: 208 -------------HEFIVLAD----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI-V 249
                         EF             ++   K   D P+        D ++  S+  
Sbjct: 174 HREALVSHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQTAPSILDYLNEESVAY 233

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKG---A 305
                 Y    ++  E     +      +    E+      FG K +L     + G    
Sbjct: 234 FNQVQSYLNALEISFEIDPTMVRGLDYYNHTTFEIMSEEEGFGAKTTLCGGGRYHGLVKE 293

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +GIG  R++ A+     D K    P    P ++ +I  +   ++     
Sbjct: 294 FGGPDTPGIG-FGIGVERILLAL--EKADVK---IPAK-KPLEVYVITAQPEAEL---KA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +  +L K G     D +  ++ +Q   A+       +I+G + +     ++K+  TG 
Sbjct: 344 VTLVNKLRKNGISAEKDYLKRKLKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGE 403

Query: 426 REDMSLEEVINYASHRFSNNRP 447
           +E +  + +      + +N + 
Sbjct: 404 QEIVFEDTLETVLIEKLTNTKE 425


>gi|295426088|ref|ZP_06818758.1| histidine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295064257|gb|EFG55195.1| histidine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 428

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 140/437 (32%), Gaps = 60/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    + + V         R    E+  P  ++ +++  S     D   K
Sbjct: 4   QRPKGTVDILPGTSDSWEKVEQTASNFFKRANYREIRTPMFENYEVFARSSGESSDIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           EM    D+  + +   P     +   +  +      +  PF  + I   FR E RP+ G 
Sbjct: 64  EMYDFDDKGGRHIALRPEGTAGVVRAYVENKLYGPEIVKPFNVFYIDPTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   +      M      +   LG+K+  +   S          
Sbjct: 122 -RQREFHQIGVESFGSSSPLADVETIMMG---HDLLAELGVKNYELHINSLGNAAVRKAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P+   LS +          ++  SK   D     +     + +  ++    
Sbjct: 178 HDALVDYFTPLKDQLSEDSQRRLSMNPLRILDSKAEEDQKFLPDAPKIREFLDDDAKKNF 237

Query: 252 WTAPYAATSDVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            T     T    +  + D            + E      +  E       G +Y      
Sbjct: 238 ETITNTLTQLGIDYVIDDDLVRGLDYYTGVIFEFMVADKKLWESATTILGGGRYD----- 292

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
                 G      +G +GIG  R++  + E +    +  GI            + NI   
Sbjct: 293 HLVEEFGGPATPAVG-FGIGEERLMLVLKEQNPALFEDNGI---------DFFITNIGEG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            ++      +I   L K G    +D   +++  QF  A+ +     + +G+K + +  + 
Sbjct: 343 TEM---KTVEIARLLRKQGFKTQYDVDQKKLKQQFRKANRVHAKYVITLGAKELENGTLN 399

Query: 418 IKHRLTGIREDMSLEEV 434
           IK    G   D+SL+++
Sbjct: 400 IKRLADGKTIDLSLDDL 416


>gi|262305747|gb|ACY45466.1| glu- + pro-tRNA synthetase [Heterometrus spinifer]
          Length = 134

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+ G   + G  +S      F+  +  +  +V   S+G+   R +  ++    D  
Sbjct: 15  SGRAIQAGTSHHLGQNFSKMFEIVFEDPETNEKKFVYQNSWGLT-TRTIGVMVMVHGDNL 73

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++       +  DA       CE++   L      V  D       
Sbjct: 74  GLVLPPEVATIQVIVVPCGITASLSEDAKNDLLHKCEELEHLLENANIRVKRDCRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|227112685|ref|ZP_03826341.1| histidyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 424

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 133/440 (30%), Gaps = 53/440 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRAGIEHGILYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M   + R+   LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAELILMTARWWRV---LGIAD-HVKLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E  V   +   D                    +                  D  
Sbjct: 173 ARARYREALVAFLEQHKDQLDEDCLRRMYTNPLRVLDTKNPQIQELLNDAPVLTDYLDDE 232

Query: 272 PENKR------------------VSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
                                     RG++     +F       G + ++     + G  
Sbjct: 233 SRAHFEALGELLTQSGIPYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMV 292

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQV-CR 362
                H      + +G  R+V  V   + D K         P     LI+     QV   
Sbjct: 293 EQLGGHATPAVGFAMGLERLVLLVQSVNPDFKA-------QPSVDAYLISSGTGTQVAAM 345

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+   L ++     +     +   QFA AD  G  + +++G   V+  +V +K+  
Sbjct: 346 QLAEKLRDALPQLKLMTNYGGGNFK--KQFARADKWGARVALVLGENEVAAGQVVVKNLS 403

Query: 423 TGIREDMSLEEVINYASHRF 442
            G ++ ++  +V +  +   
Sbjct: 404 NGEQDTLAQADVASRLATLL 423


>gi|288549933|ref|ZP_05968676.2| histidine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288317244|gb|EFC56182.1| histidine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 440

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 136/429 (31%), Gaps = 31/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 22  QAIRGMNDYLPGETAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 81

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 82  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 137

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 138 YRQFNQLGVEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLEARANY 193

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDVHNEKLF 268
             A     +    K   D      +     + S N  V+             D  + + F
Sbjct: 194 RDALVAFLEQHKDKLDEDCQRRMYSNPLRVLDSKNPDVQALLNDAPALGDYLDAESREHF 253

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM-- 322
           D L +    +     V      G  Y          T  G+ G       G Y       
Sbjct: 254 DGLCKLLEAAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGT--VCAGGRYDGLVEQL 311

Query: 323 --RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVG 376
             R   AV  +    + ++   +V P      +  I + A     + A  ++  R+    
Sbjct: 312 GGRAAPAVGFAMGLERLVLLVQAVNPEFKADSVVDIYLVASGADTQSAAMQLAERVRDAL 371

Query: 377 CDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            DV         G    QFA AD  G  + +++G   V++  V +K   +G +  ++ + 
Sbjct: 372 PDVKLM-TNHGGGNFKKQFARADKWGASIALVLGESEVANGDVVVKDLRSGEQTTVTQDG 430

Query: 434 VINYASHRF 442
           V  +     
Sbjct: 431 VAAHLRTLL 439


>gi|27262200|gb|AAN87381.1| Seryl-tRNA synthetase [Heliobacillus mobilis]
          Length = 424

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 12/203 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +  ++ +   + G  E+  P + +      +G+   + ++M  ++       
Sbjct: 168 LGARLERAIINLMMDTHAQRGYTEIFPPFMVNKQSMFGTGQLPKFAEDMFAVS---GTEY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++ + I     LP         FR E     R   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNLYGNEILEAEQLPIYHCAYSACFRAEAGAAGRDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   P+ S     K+      I   LGL    +   +G +G   +     E  + +  
Sbjct: 285 VKF-THPDHSYEELEKLTADAEHILQLLGLPYRVITLCTGDMGFSSAKTYDIEVWLPSFQ 343

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +F DF     N  F
Sbjct: 344 TYREISSCSNFEDFQARRANIRF 366


>gi|115608274|ref|XP_001177835.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
 gi|115609661|ref|XP_794293.2| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 89

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     
Sbjct: 1   MRALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCL 60

Query: 107 GPTHEEVMTDIFRSH-IKSYRNLPFTFYQ 134
           GPTHEE +TDI       S++ LP   YQ
Sbjct: 61  GPTHEEAVTDIVAGEKTLSHKRLPIKLYQ 89


>gi|163942630|ref|YP_001647514.1| glycyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229135744|ref|ZP_04264516.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|163864827|gb|ABY45886.1| glycyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228647710|gb|EEL03773.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 458

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEDELSH---------------YSNATTDIEFRFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|225857695|ref|YP_002739206.1| histidyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254782351|sp|C1CNA0|SYH_STRZP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225726000|gb|ACO21852.1| histidyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|332071392|gb|EGI81886.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
          Length = 429

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 141/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + R+++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRAYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIVMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 THFDAVSQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     +SLE +    S  F  
Sbjct: 393 RQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|150009785|ref|YP_001304528.1| glycyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|149938209|gb|ABR44906.1| glycyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
          Length = 514

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 122/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +M   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 DMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K   + L+    LGL     R           H+  
Sbjct: 261 MREFEQMEMQFF-VRPGEEIEWFKKWKSTRLKWHQALGLGDEKYR----------YHDHE 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I  +    +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAATDIEFEMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  RV  +++  
Sbjct: 345 QH------------------EKFSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSIMAG 386

Query: 332 SHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +  E+I   L +      +D
Sbjct: 387 SYCEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIINML-RFDFRCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  + + 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVSIDKLHDIITEKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|163802474|ref|ZP_02196367.1| histidyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159173775|gb|EDP58590.1| histidyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 422

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 143/429 (33%), Gaps = 32/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENAVKNTVSAYGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRACIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGINE-HVRLELNSIGSQEDRADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     + ++    +    
Sbjct: 178 RTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYG 318
               +L D+      V+ R +  G  +Y  T +   +  + A      G  +   +   G
Sbjct: 238 AGLCELLDAAGIEYTVNERLV-RGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLG 296

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV 375
             +   V   +      + ++  +++   ++     + +    +    A  K+  +L + 
Sbjct: 297 GKSTPAVGFAMGL---ERLVLMLETLELTEVRRSVDVYVVTAGEGTMMAGMKLAEQLREA 353

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V     G     QF  AD +G  + +++G   V+++ V +K  + G +E  +  E
Sbjct: 354 APGVRVMNHFGGGNFKKQFKRADKVGAVVALVLGENEVAENTVVLKDLVGGEQETYNQSE 413

Query: 434 VINYASHRF 442
           V    +   
Sbjct: 414 VAEKIAALI 422


>gi|238753874|ref|ZP_04615234.1| Histidyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238707862|gb|EEQ00220.1| Histidyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 414

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 122/426 (28%), Gaps = 41/426 (9%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   YLPADTALWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFDDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N +++   P            H   Y       + I   FR E RP+ G  R R+F    
Sbjct: 64  NGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--RYRQFHQLG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A  F L           + +   R +  LG+    +  E   IG          AD  E 
Sbjct: 120 AEVFGLQGPDIDAE---LILLTARWWKALGISE-HVHLELNSIGS-----LAARADYREA 170

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------PE 273
            +   +   D                    +               +  D          
Sbjct: 171 LIAFLEQHQDILDEDCKRRMYSNPLRVLDSKNPEIQQLLNEAPRLSEYLDEDSKQHFSGL 230

Query: 274 NKRVSARGIEVGHIFYF--GTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            + +   GI          G  Y          T  G+ G       G Y     ++   
Sbjct: 231 CELLDHAGIPYSVNERLVRGLDYYNRTVFEWVTTSLGSQGT--VCAGGRYDGLVEQLGGR 288

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              +     G+              AP     I + +  Q  + A  ++   L      +
Sbjct: 289 ATPAVGFAMGLERLVLLVQAVNPEFAPQPAVDIYLVSSGQGTQSAAMQLAETLRDALPSL 348

Query: 380 FWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                    G    QFA AD  G  + +++G   VS  +V +K    G +E ++  +V  
Sbjct: 349 KLM-TNYGGGNFKKQFARADKWGARIALVLGEDEVSAQQVVVKDLRKGEQETLAQADVAA 407

Query: 437 YASHRF 442
             +   
Sbjct: 408 RLASML 413


>gi|297182947|gb|ADI19095.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0070_34A12]
          Length = 420

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 136/431 (31%), Gaps = 33/431 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q ++G    +P        V    R      G  EM+ P  + A+++        D   K
Sbjct: 5   QPARGTTDLMPAAMAGHQRVIGTARAAAGLYGFQEMATPMFEFAEVFSRPLGDSSDVVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  + +   P +   +     S+    ++LP  F+     FR E RP+ G  R
Sbjct: 65  ETYNFTDRGGETLTLRPENTAGVVRAMISNGL-TQSLPLKFFYAGPMFRYE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F         L    +            RI   LG+           +G   S +  
Sbjct: 121 MRQFHQIGIEYLGLCDGLADAEIIGCGA---RILDDLGVLDRCT-LHLNSLGDSESRQAY 176

Query: 212 ----------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       AD  E             + S++     II+    ++ +    +    
Sbjct: 177 RAALVDFLNAHEADLSEDSRTRLTSNPLRILDSKDAGDRAIIAEAPSLDAFLNDGSRRHF 236

Query: 262 VHNEKLFDSLPENKRVSA---RGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +     D    +        RG++      F F T  +L    T  G    D   +M  
Sbjct: 237 DNVTGALDGAGISWSFDPLLVRGLDYYCHTAFEFITD-ALGAQGTVLGGGRYDGLSEMLG 295

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
                    AA +E      G + P   AP  ++++ +    +    A   +   L   G
Sbjct: 296 GPPVPGVGWAAGVERLAMLVGDVEPA--APR-VAVMPMDGDAEG---AAFALAESLRGAG 349

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V     G  IG +   AD  G  + VI+GS  V+    +I+    G + ++   E+ +
Sbjct: 350 IAVDLPAGGA-IGKRLKKADRAGVRIAVILGSDEVAGGSAQIRDLGAGRQREVPQAELAS 408

Query: 437 YASHRFSNNRP 447
                 S  + 
Sbjct: 409 VLHGMLSEGQA 419


>gi|237719787|ref|ZP_04550268.1| glycyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|229451056|gb|EEO56847.1| glycyl-tRNA synthetase [Bacteroides sp. 2_2_4]
          Length = 513

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 118/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M              +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 197 MFSTEMGSTSEGAMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      + K     L+    LG              GD S
Sbjct: 257 FIFRMREFEQMEMQFF-VKPGTELDWFKKWKEIRLKWHKALGF-------------GDAS 302

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           + +                         +       +   I       +     +H+   
Sbjct: 303 YRYH----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTN 340

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                       K+S      F     + +   +    IG  R+  +
Sbjct: 341 FDLSQH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLS 382

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++ +S+  + +           P ++AP K++++ +   D    +   ++   L K    
Sbjct: 383 IMSASYCEEQLENGESRVVLKLPAALAPVKLAVMPLVKKDS-LPEKAREVIDSL-KFHFH 440

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  
Sbjct: 441 CQYDE-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNII 499

Query: 439 SHRFS 443
           + R S
Sbjct: 500 ADRVS 504


>gi|110639855|ref|YP_680065.1| glycyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282536|gb|ABG60722.1| glycyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 504

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 117/347 (33%), Gaps = 39/347 (11%)

Query: 93  MLRLAD----RNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M          +   +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 175 MFSTQVGSVAEDSSTIYLRPETAQGIFVNFLNVQKSGRMKIPFGIAQIGKAFRNEIVARQ 234

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R REF   +   F + P      YNK   S L     +GL +  ++           
Sbjct: 235 FTFRMREFEQMEMQFF-IRPGTEMEWYNKWKESRLNWHKAIGLPAEKLKF---------- 283

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+   LA         +   ++F  P    + + I S            +     + +  
Sbjct: 284 HDHEKLA-----HYANAAVDIEFEFPFGFKEMEGIHSRTDFDLANHQELSKKKQQYFDND 338

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D +      +     V      G        A    A  ++  V+    G      V  
Sbjct: 339 IDPVTGKAFGNYVPFVVETS--VGAD--RCFLAVLCNAYTEETTVEQTEEGEKVKERVY- 393

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +    ++AP K +++ I   D    +   +IY  L K    V ++D  + 
Sbjct: 394 ----------LKLHPTLAPIKAAILPITKKD-GLPEKAMEIYNEL-KYDIKVTYED-KDS 440

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           IG ++   DL+G P  + V  + + D+ V I+HR T ++E + + E+
Sbjct: 441 IGKRYTRNDLIGTPFCIAVDHQTLEDNTVTIRHRDTTLQERVPISEL 487


>gi|328794107|ref|XP_001123169.2| PREDICTED: seryl-tRNA synthetase-like, partial [Apis mellifera]
          Length = 258

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 13/212 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIY 106
             +   + +    + G  E   P + + ++ + +G+   + ++M +++   + N +    
Sbjct: 3   RALAQFMLDTHTQQHGYTEHYTPHIVNPEILLGTGQLPKFAEDMYKVSCGGEENTQEQYL 62

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
             T E  +T+  R  I S   LP         FR E     +   G++R  +F   +   
Sbjct: 63  ISTAEITLTNTVRERILSKDELPKKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQ 122

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGE 218
               PE S  +  +M     +I   L L    +   +G +G   +     E  V A    
Sbjct: 123 IQ-RPENSYAALEEMVGHAEKILQLLELPYRVIVLCTGDMGFSAAKTYDLEVWVPAQNTY 181

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            ++    +  DF        F D    N +V 
Sbjct: 182 REISSCSNCEDFQARRMQARFKDNDGKNQLVH 213


>gi|327189128|gb|EGE56313.1| seryl-tRNA synthetase [Rhizobium etli CNPAF512]
          Length = 427

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +  A+    +G    + +++ +  D         PT
Sbjct: 176 RALGQFMIDLHTREHGYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD----GRYLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVREEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E +   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 291 DAESAIAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSVCGDFQARRMNARY 368


>gi|320354861|ref|YP_004196200.1| histidyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320123363|gb|ADW18909.1| histidyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 424

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 131/442 (29%), Gaps = 49/442 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q   G    LP       ++    R+   R G  E+  P ++  +L+V S G   D   K
Sbjct: 4   QAINGFKDILPDTAVRWRHIEQRARDIFERFGMREIRTPIMEKTELFVRSIGEATDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+    +   P     +   F  H    +      Y I   FR E RP+ G  R
Sbjct: 64  EMYTFIDKG---ITMRPEATASIMRAFIEHGLHVQQPIQRLYAIGPMFRHE-RPQKG--R 117

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F   DA                M    L     LGL    +  E   +G  +     
Sbjct: 118 LRQFHQLDAEIIGAVEPRVDAELIAMGQMLL---DELGLS---VSLELNSLGCPICRPPF 171

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   +        D    ++      ++       +     A +         D  
Sbjct: 172 KQRLVAFLEQTSEGLCEDCKRRTQTNPLR-VLDCKKPTCRALVKDAPSLLDALCPDCDRH 230

Query: 272 PENKRVSARGIEVGHIFYF------GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAM- 322
            +  + + +G+E+   F        G  Y               +      G Y      
Sbjct: 231 FQEVQGALQGLEI--PFRLNPFMVRGLDYYTRTTFEFLTTDLGAQAAVGAGGRYDGLIEE 288

Query: 323 ---------------RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                            +A ++E   +G+         P   + I I A  Q     C +
Sbjct: 289 LGGPPLSGIGFAMGLERIALLLEQRPEGE--------QPTDTTDIFIAALGQATLAPCSQ 340

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L K G  V  D  G  + +    A  +     +IVG    +  +  +++  T  ++
Sbjct: 341 LAHGLRKQGIRVGIDYSGRGLKALLKQAARINARFTLIVGDDEWASQQGILRNMTTQEQQ 400

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
            ++L    +  S R + +  VL
Sbjct: 401 PVALVGTTDELSRRLAEHLQVL 422


>gi|121998567|ref|YP_001003354.1| histidyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|189082299|sp|A1WXZ0|SYH_HALHL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|121589972|gb|ABM62552.1| histidyl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 423

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 132/430 (30%), Gaps = 44/430 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G    LP          + IR      G  E+ +P L+  +L+  S G   D   KEM  
Sbjct: 11  GFSDILPEESPLWQYAESAIRRVLESYGYREIRLPVLERTELFSRSIGEVTDIVEKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P                +   P  +Y     FR E RP+ G  R R+F
Sbjct: 71  FDDRNGDSVTLRPEGTAGCVRAGIQSGLLHNAEPRLWYA-GPMFRHE-RPQKG--RLRQF 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------------- 199
               A  F +           M +   R+   LGL  + ++  S                
Sbjct: 127 HQVGAEVFGIPEPELDAE---MIIMTARMLRELGLSDVRLQLNSLGTPESRAAHREQLVA 183

Query: 200 --GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                   L  +     +T   ++F SK+     + ++     D +   S          
Sbjct: 184 YLRRHEDRLDEDARRRLETNPLRIFDSKNPQVQQVMADAPRLMDCLDSVSAEHFTVVRNL 243

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMG 315
                   ++  SL        R +        G + ++     F G             
Sbjct: 244 LERAGVEYEVNPSLVRGLDYYTRTVFEWVTDRLGAQGTVCAGGRFDGLVEQLGGRPTPAI 303

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            + +G  R+VA + +    G+G       AP    ++  +A      +  E +   L   
Sbjct: 304 GFALGLERLVALLEDQGTPGQGG------APHAYLVVATEAG--AGLEMAEALRDALPA- 354

Query: 376 GCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLE 432
              V     G   G +     AD  G  + +I+G    +   + IK  R    ++ + L+
Sbjct: 355 -LRVQMHAGGG--GFKAQLKRADRSGARVALILGDDEQAAGALTIKDLRGEDGQQRLPLD 411

Query: 433 EVINYASHRF 442
           + + Y     
Sbjct: 412 DAVTYLRGLI 421


>gi|324113008|gb|EGC06984.1| histidyl-tRNA synthetase [Escherichia fergusonii B253]
 gi|325496453|gb|EGC94312.1| histidyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 424

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 129/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQPAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             F  AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELPGVKLMTNHGGGNFKKQFGRADKWGARIAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|299067267|emb|CBJ38464.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) [Ralstonia
           solanacearum CMR15]
          Length = 440

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 133/441 (30%), Gaps = 64/441 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 16  KGMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMY 75

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 76  SFTDALNGEQLTMRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 131

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +              M     R++  LGL  + +          RA      
Sbjct: 132 QFHQVGVEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQAEERAAHRADL 188

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F  + D  E             + ++N    ++ +    +  +    +      
Sbjct: 189 IKYLEGFQDILD--EDSKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGDESRRHFEG 246

Query: 264 NEKLFDSLPENKR---VSARGIEV-------GHIFYFGTKYSLP----MSATFKGADGKD 309
            + L  +            RG++              G + ++          +   GK 
Sbjct: 247 VQALLKANNIPYMINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKP 306

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDAC 365
                  + +G  R++  + E +           +AP      + +++     QV     
Sbjct: 307 APA--CGWAMGVERIIELLREEN-----------LAPEPQGCDVYIVHQGDQAQVQALVA 353

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
                RL   G DV      +       SQF  AD  G    VI+G   V+    ++K  
Sbjct: 354 ---AERLRDAGLDVILHCSPEGRNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQLKPL 410

Query: 421 RLT---GIREDMSLEEVINYA 438
           R       ++ +  +++++  
Sbjct: 411 RGDPSADAQQTVPADQLVDRL 431


>gi|282854107|ref|ZP_06263444.1| glycine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583560|gb|EFB88940.1| glycine--tRNA ligase [Propionibacterium acnes J139]
          Length = 481

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 123/398 (30%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 141 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 194

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 195 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVE-------------- 240

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                P   +  H++ + A T             +     N D 
Sbjct: 241 ---------------------PGTDEEWHQYWIDARTA-----------WYTDLGINPDN 268

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 269 LRHYEHPKEKLSHYSKRTVDVEYKFGFTGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 326

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 327 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 383

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 384 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 440

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V ++ R T  ++ +S+++V  Y   R 
Sbjct: 441 TVDFDSLEDDAVTVRERDTMAQQRVSIDKVEEYLGGRL 478


>gi|261820574|ref|YP_003258680.1| histidyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261604587|gb|ACX87073.1| histidyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 424

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 134/440 (30%), Gaps = 53/440 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGILYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M   + R+   LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAELILMTARWWRV---LGIAD-HVKLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E  V   +   D                    +                  D  
Sbjct: 173 ARARYREALVAFLEQHKDQLDEDCLRRMYTNPLRVLDTKNPQIQALLNDAPVLTDYLDDE 232

Query: 272 PENKR------------------VSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
                                     RG++     +F       G + ++     + G  
Sbjct: 233 SREHFEALGELLTQSGIPYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMV 292

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQV-CR 362
                H      + +G  R+V  V   + D K         P     LI+     QV   
Sbjct: 293 EQLGGHATPAVGFAMGLERLVLLVQSVNPDFKA-------QPSVDAYLISSGTGTQVAAM 345

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+   L ++     +     +   QFA AD  G  + +++G   V+  +V +K+  
Sbjct: 346 QLAEKLRDALPQLKLMTNYGGGNFK--KQFARADKWGARVALVLGENEVAAGQVVVKNLS 403

Query: 423 TGIREDMSLEEVINYASHRF 442
            G ++ ++  +V +  +   
Sbjct: 404 NGEQDTLAQADVASRLTTLL 423


>gi|297180647|gb|ADI16857.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0010_13E22]
          Length = 469

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 134/431 (31%), Gaps = 33/431 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q ++G    +P        V    R      G  EM+ P  + A+++        D   K
Sbjct: 54  QPARGTTDLMPAAMAGHQQVIGKARAAAGLYGFQEMATPMFEFAEVFSRPLGDSSDVVTK 113

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  + +   P +   +     S+    ++LP  F+     FR E RP+ G  R
Sbjct: 114 ETYNFTDRGGETLTLRPENTAGVVRAMISNGL-TQSLPLKFFYAGPMFRYE-RPQKG--R 169

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +            RI   LG+           +G   S +  
Sbjct: 170 MRQFHQIGIEYLGPRDGLADAEIIGCGA---RILDDLGVLDRCT-LHLNSLGDSESRQAY 225

Query: 212 ----------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       AD  E             + S++     II+    ++ +    +    
Sbjct: 226 RAALVDFLNAHEADLSEDSRTRLTSNPLRILDSKDAGDRAIIAEAPRLDAFLNDGSRWHF 285

Query: 262 VHNEKLFDSLPENKRVSA---RGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                  D    +        RG++      F F T  +L    T  G    D   +M  
Sbjct: 286 DSVTGALDGAGISWSFDPLLVRGLDYYCHTAFEFITD-ALGAQGTVLGGGRYDGLSEMLG 344

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
                    AA +E      G + P   AP  ++++      +    A   +   L  VG
Sbjct: 345 GPPVPGVGWAAGVERLAMLVGDVVPA--APR-VAVMPTDGDAEG---AAFALAESLRGVG 398

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V     G  IG +   AD  G  + VI+GS  V+    +I+    G ++++   E+ +
Sbjct: 399 IAVDLPAGGA-IGKRLKKADRAGVRIAVILGSDEVAGGSAQIRDLGAGKQQEVPQAELAS 457

Query: 437 YASHRFSNNRP 447
                    + 
Sbjct: 458 VLHGMLGEGQA 468


>gi|218516937|ref|ZP_03513777.1| seryl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 347

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +  A+    +G    + +++ +  D         PT
Sbjct: 96  RALGQFMIDLHTREHGYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD----DRYLIPT 151

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 152 AEVTLTNLVREEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 210

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             + +   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 211 DADSAIAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREI 270

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 271 SSCSVCGDFQARRMNARY 288


>gi|321441285|gb|ADW85057.1| glu- + pro-tRNA synthetase [Alucita sp. JCR-2011]
          Length = 134

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   D ++  YV   S+G+   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPDTQEKAYVYQNSWGLT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             Q   DAC+ +   L + G     D       
Sbjct: 74  GLVLPPRVADIQAIVVPCGVTASSTPQDRQTLADACQMLVDELKQAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|42560626|ref|NP_975077.1| seryl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|81829421|sp|Q6MUG5|SYS_MYCMS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|42492122|emb|CAE76719.1| Serine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320587|gb|ADK69230.1| serine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 422

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K +  +  I+ +   + G  E+  P + +    + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRAIADILLKRHEKHGYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVG--- 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 225 --EQYLIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +       P+ S +    +      + +   L    +   SG IG   +     E   
Sbjct: 283 KVELVKI-THPDQSMNELESLVKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYDLEVWF 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                  ++    +  DF   +  T F D      +V 
Sbjct: 342 PEQNKYREISSCSNCTDFQARNIQTRFKDKDGKIKLVH 379


>gi|228923648|ref|ZP_04086927.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228961167|ref|ZP_04122789.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229130174|ref|ZP_04259134.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229193180|ref|ZP_04320132.1| Glycyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228590300|gb|EEK48167.1| Glycyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228653288|gb|EEL09166.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228798514|gb|EEM45505.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228836009|gb|EEM81371.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 487

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                +S
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MS 282

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 283 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 327

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 328 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 367

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 368 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 423

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 424 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 482

Query: 440 HRFS 443
            +  
Sbjct: 483 KKIQ 486


>gi|253582385|ref|ZP_04859608.1| seryl-tRNA synthetase [Fusobacterium varium ATCC 27725]
 gi|251835924|gb|EES64462.1| seryl-tRNA synthetase [Fusobacterium varium ATCC 27725]
          Length = 423

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 14/222 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  +G +    +   + +      G  E   P L   ++   +G+   + ++M +  
Sbjct: 162 FVLYRGMGARIERALINFMLDMHTTEHGYTEHITPFLVKREICEGTGQLPKFEEDMYKTT 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     M    T E  MT+I R  I   + LP  +      FR E     +   G++R  
Sbjct: 222 D----DMFLISTSEITMTNIHRKEILDEKELPKYYTAYSPCFRREAGSYGKDVKGIIRVH 277

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +      T E S     KM V+   +  RL L    ++  +G +G   +     E
Sbjct: 278 QFNKVEMIKI-ATQESSYDELEKMVVNAEEVLKRLELPYRVIQLCTGDLGFSAAKTYDLE 336

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             + +     ++    +  DF        +    S  S    
Sbjct: 337 VWLPSQNKYREISSCSNCTDFQARRMGLKYRPNGSSKSEFCH 378


>gi|148553561|ref|YP_001261143.1| seryl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|166223292|sp|A5V3Y9|SYS_SPHWW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148498751|gb|ABQ67005.1| seryl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 425

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 9/161 (5%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +    + A + + Q   G  E+  P L   +    +G+   + +++ R  D        
Sbjct: 171 ARLQRALGAFMLDRQTAAGFTEVIPPLLVRDEAVFGTGQLPKFAEDLFRTTD----GRWL 226

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  +T++ R  I +   LP     +   FR E     R   G++R  +F   +  +
Sbjct: 227 IPTAEVSLTNLVREQIVAEAELPMKMTALTPCFRSEAGAAGRDTRGLIRQHQFEKVELVA 286

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              TPE S   +  M  +   I   LGL    +   +G +G
Sbjct: 287 I-TTPEQSDAVHEAMTKAAEAILEALGLPYRRVLLCTGDMG 326


>gi|88808090|ref|ZP_01123601.1| histidyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88788129|gb|EAR19285.1| histidyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 421

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 131/421 (31%), Gaps = 48/421 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP   +   NV A+ RE   R G  E+  P L+  +L+    G   D  GKEM  
Sbjct: 9   GMVDLLPEQTRRWQNVEAVAREHFRRAGLEEIRTPLLEVTELFARGIGEATDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      H    + +   +Y     FR E RP+ G  R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVVRAAVQHGLLSQGVQKLWYS-GPMFRYE-RPQAG--RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI---- 211
                    ++   S      +      +   LGL+   ++ E   +G     +      
Sbjct: 125 HQIGVECLGVSSARSDVE---VIALAWDLLADLGLE--HVKLEINTLGTSEDRQAYRNTL 179

Query: 212 -VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA--------ATSDV 262
               +    Q+           P    D  +  +   + +  T   A             
Sbjct: 180 VTWLEERSDQLDADSQKRLSTNPLRILDSKNQSTQALLNDAPTLQAALSAESASRFEHVQ 239

Query: 263 HNEKLFDSLPENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      +     RG++  GH  +  T   L   AT  G  G+   +     G   
Sbjct: 240 ALLTQLSIPFTHNTRLVRGLDYYGHTAFEITSDQLGAQATVCGG-GRYDGLVQQLGGPAT 298

Query: 322 --------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                   M  +  ++ ++ D          AP  + L+N     +        +   L 
Sbjct: 299 PAVGWALGMERLLLMLGNASDA---------AP-DVYLVNRGDQAEGV---ALGLARDLR 345

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLE 432
             G  V  D  G   G QF  AD    P  +++G   V    V IK  +  G    +   
Sbjct: 346 NAGLAVELDGSGAAFGKQFKRADRCKAPSALVLGDGEVDQGIVRIKRLQGDGEEHTLPWN 405

Query: 433 E 433
           +
Sbjct: 406 D 406


>gi|312973245|ref|ZP_07787417.1| histidyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|310331840|gb|EFP99075.1| histidyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|323184425|gb|EFZ69800.1| histidyl-tRNA synthetase [Escherichia coli 1357]
          Length = 414

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 126/429 (29%), Gaps = 47/429 (10%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   YLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N  ++   P            H   Y       + I   FR E RP+ G  R R+F    
Sbjct: 64  NGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--RYRQFHQLG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
              F L           + +   R +  LG+    +  E   IG   +      A     
Sbjct: 120 CEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANYRDALVAFL 175

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           +    K   D            + S N  +        A    +  E         K + 
Sbjct: 176 EQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLE 235

Query: 279 ARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM----RVVAAVIE 330
           + GI          G   Y+  +      + G +      G Y         R   AV  
Sbjct: 236 SAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGF 295

Query: 331 SSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +    + ++   +V P      +  I + A     + A   +  RL             E
Sbjct: 296 AMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL-----------RDE 344

Query: 387 QIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +             FA AD  G  + V++G   V++    +K   +G +  ++ + 
Sbjct: 345 LPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDS 404

Query: 434 VINYASHRF 442
           V  +     
Sbjct: 405 VAAHLRTLL 413


>gi|255534200|ref|YP_003094571.1| glycyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340396|gb|ACU06509.1| Glycyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 519

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 115/341 (33%), Gaps = 49/341 (14%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +       S   LPF   QI   FR+E+  R  + R REF   +   F + P 
Sbjct: 225 TAQGIFVNFLNVQKTSRHKLPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF-VPPG 283

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                Y +     L     LGL             G  +++F             +    
Sbjct: 284 TELDFYEEWKQKRLNWHLALGL-------------GAENYKFHDHEKLAHYANAAADIEF 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            FP   +  +     +   +               +E+  + +P     S     VG   
Sbjct: 331 KFPFGFKELEGIHSRTDFDLSAHEKHSGRKLQYFDSERNENYVPFVVETS-----VGLDR 385

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            F   +S  +       DG +  V                         +  P ++AP K
Sbjct: 386 LFLAIFSNSLKDEVL-EDGSERTV-------------------------LSLPPALAPVK 419

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +   D    +  EKI+  L K   +V ++D  + IG ++   D +G P  + +  
Sbjct: 420 AAILPLMKKD-GLGEYGEKIFNDL-KFDFNVIYED-KDSIGKRYRRQDAIGTPFCITIDH 476

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             + D+ V ++ R T  +E +++ ++        +N R +L
Sbjct: 477 DTLKDNTVTLRDRDTMKQERVAVADL-RRIIDEKTNFRNLL 516


>gi|295692848|ref|YP_003601458.1| histidyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295030954|emb|CBL50433.1| Histidyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 428

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 138/442 (31%), Gaps = 60/442 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPDQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFARSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFDDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   S      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSSNPLSDVQTIMMG---HDLLGELGVKNYQLHINTLGNEQVRQDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMD-------FPIPSENTDFDDIIS 244
                    P+  +LS +          ++  SKD  D         I     D      
Sbjct: 178 HDALVNYFTPLKDELSEDSQRRLRDNPLRILDSKDERDKKFLPKAPKIREFLDDDSKANF 237

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG----IEVGHIFYFGTKYSLPMSA 300
              +            D    +  D                 E       G +Y      
Sbjct: 238 EAILKMLDQLGIDYVIDDDLVRGLDYYTGIIFEFMVKDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
             +  +G         +GIG  R++  + + +    + +GI            + NI   
Sbjct: 294 LVEEFNGPATPAV--GFGIGEERLMLVLEKQNPALFEKRGI---------DFFITNIGDG 342

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    +I   L   G +  +D   +++ +QF  AD  G    + +G K +++  + 
Sbjct: 343 ---TAQKAIEIARSLRNQGFEADFDVNQKKLKNQFKKADREGAKYVITLGEKELANGVLN 399

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           IK    G   D+SLE++ N   
Sbjct: 400 IKRLADGKTIDLSLEDLNNMTK 421


>gi|296414076|ref|XP_002836729.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295631567|emb|CAZ80920.1| unnamed protein product [Tuber melanosporum]
          Length = 609

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 135/394 (34%), Gaps = 57/394 (14%)

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGV 149
           M + +     +      P   +     F    + +   +PF    I   FR+E+ PR G+
Sbjct: 202 MFQTSIGPSANLPGYLRPETAQGQFLTFNKLYEFNNLRMPFASASIGKSFRNEISPRSGL 261

Query: 150 MRSREFLMKDAYSFDLTPEGS--KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           +R+    + +    +   EG     +              LG+    +R     +  +++
Sbjct: 262 LRT---TIVEKTIGEAVKEGIVDNETLGYFLARIHLFLKELGVDQEKVRF-RQHMPNEMA 317

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDF------------------------DDII 243
           H     AD  + ++F S  +++    ++ + +                         +  
Sbjct: 318 H---YAADCWDAELFTSYGWIECVGCADRSAYDLTVHSSRTGEQLVVRETLEPPKVWEEW 374

Query: 244 SLNSIVEQWTAPYAATSDVHNEKL-FDSLPENKRVSARGIEVGHIF----YFGTKYSLPM 298
            ++   +     +   +    E +   S    +++++   + G +F      G   S+ +
Sbjct: 375 DMDVDKKWLGPKFRKDAKKIEEAVARISQGAREKLASVQKDGGKVFIEVEGLG---SVEL 431

Query: 299 SATFKGADGK-----DHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAP 346
                  + K     ++   +     G  R+  ++IE  +           + +P  +AP
Sbjct: 432 EKVTIAKNKKAVNIREYTPNVIEPSFGIGRIFYSLIEHIYWSRPGDEARGVLSFPPKIAP 491

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            KI ++ +  H          + A++ + G     D+    IG ++A  D LG P  V V
Sbjct: 492 TKILIVPLSGHSDFA-PIVTALSAKIRRAGISNRVDNSSATIGKRYARNDELGTPFGVTV 550

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             + + D  + ++ R    +   + +EVI   S 
Sbjct: 551 DFQSLKDGTITLRERDGMKQVRGTQDEVIETVSQ 584



 Score = 41.1 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G     N+    R+   +    +E+    L   D+   SG  D +   M
Sbjct: 36 SGLYDYGPPGCSLQANIVDAWRKHFVHEEDMLEVDCTMLTPNDVLKTSGHVDKFADWM 93


>gi|262198185|ref|YP_003269394.1| histidyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262081532|gb|ACY17501.1| histidyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 423

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 137/434 (31%), Gaps = 45/434 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           +  +G+   LP             R    R G  E+  P ++S +L+    G   D   K
Sbjct: 6   KSPRGMNDLLPSESAKWLYFEGACRSLFERFGYHEVRTPVVESTELFARGIGEATDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVM 150
           EM    DR D+++   P         +  H   ++  P   ++     FR E   R    
Sbjct: 66  EMYTFRDRKDRSLTMRPEMTAGCARAYIEH-AVHKREPVTRWFYTGPMFRYE---RMQTG 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R+F      +F             M  +   ++ +LG+ S+ +   S   G D     
Sbjct: 122 RYRQFYQVGVEAFGSDAPSIDAEQIAMCYA---LYQQLGVTSLEVVVNSVGGGDDRQRYR 178

Query: 211 IVLAD--TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---------PYAAT 259
             L    T + +  C        +         + S  +IV                   
Sbjct: 179 DALLAFLTPQREALCGDCQRRLDVNPLRILDCKVESCRAIVADAPNILESLGADSRAHFD 238

Query: 260 SDVHNEKLFDSLPENKRVSARGIE---------VGHIFYFGTKYSLPMSATFKG---ADG 307
           +       F           RG++         +GH    GT+ +L     +       G
Sbjct: 239 AVCAQLTAFGVEFRVDPKIVRGLDYYTGTVFEILGHSAGLGTQSTLVGGGRYDTLLERLG 298

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +G + +G  R V ++   + D +G      +A        + +     R     
Sbjct: 299 GPATPAVG-FALGVERAVLSLEGEADDYQG----KPLA-------YLASRGDEARARALA 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  RL   G  +  +     + +QF  AD LG    + +G   ++  +V+I+    G   
Sbjct: 347 LAYRLRLAGLRIEVEHRAVGLKAQFKRADKLGARYVITIGEDELASGEVKIRDMKRGQES 406

Query: 428 DMSLEEVINYASHR 441
             +L+E+      R
Sbjct: 407 PAALDELEAALKQR 420


>gi|237740163|ref|ZP_04570644.1| histidyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229422180|gb|EEO37227.1| histidyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 413

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 129/411 (31%), Gaps = 45/411 (10%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + +E     G      P  +  DL+    G   D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQEMFENYGYKFAKTPIFEETDLFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              M   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASMVRCYLENSIYAKEDVSRFYYNGSMFRYE-RPQAG--RQREFNQIGVEVFGEKSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAE------SGPIGGDL------SHEFIVLADTGE 218
                 M         +LG+  + ++        S  I  +       SH   +  D  +
Sbjct: 141 DAEVIAMG---YNFLTKLGITDLEVKINSVGSKGSRTIYREKLVEHFQSHLDDMCEDCKD 197

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                    +D  +   + DF                           +F          
Sbjct: 198 RINRNPLRLLDCKVDG-DKDFYKSAPSIIDYLFEDERKHYEEVKKYLTIFGVKFTEDPTL 256

Query: 279 ARGIEVG--HIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIE 330
            RG++     +F       G++ ++     +     +     + ++G  A +  V  +I 
Sbjct: 257 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAFGFAAGVERVMMLIG 316

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            ++            P  +  + I        +   KI   L K    V+ D   +  G 
Sbjct: 317 DNY------------PKDVPDVYIAWLGDDTIETAMKIADSLRKENVKVYVDYSSK--GM 362

Query: 391 Q--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +     AD L     +I+G   ++   V +K   T  ++++ +EE+IN+  
Sbjct: 363 KSHMKKADKLETKYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIINHIK 413


>gi|126652268|ref|ZP_01724447.1| glycyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591000|gb|EAZ85112.1| glycyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 470

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 122/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  +  PF   Q+   FR+E+ P  
Sbjct: 162 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKRTPFGIAQVGKSFRNEITPGN 221

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E  +      + SY + F +  L ++ M+ +S        
Sbjct: 222 FTFRTREFEQMELEFFCKPGEDLE------WHSYWKEFCKNWLLNLGMKEDS---MRLRD 272

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE   L+                        + +  +       +            +  
Sbjct: 273 HEDDELS-----------------------HYSNATTDIEFKFPFGWGELWGIADRTDYD 309

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVA 326
                             H+ + G  +      T+      + +        +GA RV  
Sbjct: 310 LK---------------QHMEHSGEDF------TYIDPVSNERYIPYCIEPSLGADRVTL 348

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +          +  ++APFK +++ +        D    ++A L K   
Sbjct: 349 AFLCDAYDEEELEGDDKRTVLRFHPAIAPFKAAVLPLSKK---LSDEATDVWAELRKA-F 404

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V +D+  + IG ++   D +G P  +        D +V ++HR +  +  M + EV  Y
Sbjct: 405 PVDFDES-QSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHRDSMTQVRMPISEVKAY 463

Query: 438 ASHRFS 443
                 
Sbjct: 464 IEKHLQ 469


>gi|220919077|ref|YP_002494381.1| seryl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254783000|sp|B8J8M9|SYS_ANAD2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219956931|gb|ACL67315.1| seryl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 435

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 9/183 (4%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G    +  G  A     + +   +     G  E+  P L + +    +G+   + +++ 
Sbjct: 161 SGSRFTILKGAAARLERAIVSFFIDVHTSRGYTEILPPYLVTGETMTGTGQLPKFEEDLF 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           +    N+  M   PT E  +T++ R  I     +P ++      FR E     R   G+M
Sbjct: 221 KTT--NEPPMYLIPTAEVPVTNMHRDEIFEANAMPVSYCAFSPCFRAEAGSAGRDTRGIM 278

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R  +F   +        E S   + KM      +  RLGL        +G +G   +  +
Sbjct: 279 RQHQFHKVELVKLS-KAEESDAEHEKMLDDACEVLRRLGLHHRVSLLCTGDMGFSSAKTY 337

Query: 211 IVL 213
            + 
Sbjct: 338 DIE 340


>gi|317472458|ref|ZP_07931781.1| glycyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900076|gb|EFV22067.1| glycyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 463

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 110/364 (30%), Gaps = 71/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F                                  ++        
Sbjct: 215 FTFRTREFEQMELEFFC-------------------------------EPDTDLEWFAYW 243

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            EF +        +   +  +      E + +    S    +  +            +  
Sbjct: 244 KEFCINWLKTL-GITDDQMRVRDHGKEELSFYSKATSDIEFLFPFGWGELWGIADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                             F     + +   +    +GA RV  A
Sbjct: 303 LTQHQNTSGEDL--------------------TYFDDEKKERYIPYVIEPSLGADRVTLA 342

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + +          +  ++AP KI ++ +        +   K+Y  L+K   +
Sbjct: 343 FLCAAYDEEELEGGDKRTVLRFHPAIAPVKIGVLPLSKK---LAEGAGKVYETLAKY-YN 398

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+ G  IG ++   D +G P  V        D  V ++ R T  +E + +E++  Y 
Sbjct: 399 CEYDERGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERVKIEDLKEYF 457

Query: 439 SHRF 442
             +F
Sbjct: 458 EKKF 461


>gi|253999424|ref|YP_003051487.1| histidyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253986103|gb|ACT50960.1| histidyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 418

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 124/439 (28%), Gaps = 56/439 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG Y  LP        +    R+   + G   + +P ++  DL++ S     D   
Sbjct: 5   FQSIKGFYDILPEQTALWQKLEDTARQVLGQYGYRNIRMPIVEPTDLFIRSVGEHTDIVE 64

Query: 91  KEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM    D  N   +   P            H  +Y N P   + +   FR E       
Sbjct: 65  KEMYSWVDALNGDKLTLRPEGTAGCVRAVVEHSLTY-NGPQRLWYMGPMFRHE---NVQK 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F      +F               +   R++  LGL  + ++  +  IG      
Sbjct: 121 GRQRQFHQIGVEAFGYAQPEVDAE---QIMLLARLWRALGLTDVELQLNT--IGDAA--- 172

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH------ 263
               A+  +  +   +   D                    +                   
Sbjct: 173 --ERAEYRQVLIAYFEQHADLLDEDAKRRLHTNPLRILDSKNPRMQAMIEGAPRLLDTLG 230

Query: 264 --NEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMS--ATFKGADGK--------- 308
             +   FD++      +     +      G  Y          T  G+ G          
Sbjct: 231 GESRAHFDAVCALLNAANIPFVLNTRLVRGLDYYNRTVFEWVTTRLGSQGTIAGGGRYDT 290

Query: 309 ------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                         +GIG  RV   ++   +   GI   ++       L+N+    +   
Sbjct: 291 LVERLGGDATPACGFGIGLERVF--LLMQEY---GI---EAAQGLDGYLVNLGEQAER-- 340

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HR 421
               ++  +L   G  V     G    SQ   AD  G    +I+G       ++ +K   
Sbjct: 341 -LAPQVAEQLRDAGISVALHTGGGSFKSQMKKADRSGARFALILGDDEAQAGQITLKPML 399

Query: 422 LTGIREDMSLEEVINYASH 440
             G ++ + L + I +   
Sbjct: 400 GGGEQQRLDLLQAIQHLKE 418


>gi|326481313|gb|EGE05323.1| glycyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 654

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 136/397 (34%), Gaps = 84/397 (21%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS--YNKMFVSYLRIF 185
           +PF    I   FR+E+ PR G++R REFLM +   F + PEG K    ++++    L   
Sbjct: 238 MPFASACIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHPRFHEVQDVELEFL 296

Query: 186 HR----------------------------LGLKSIPMRAESGPIGGDLS---------H 208
           +R                            LG     +      IG D S         +
Sbjct: 297 NRKVQLSGSTATTRMSIGKAVSTGLVDNETLGYFLARIYLFLKKIGIDESKIRLRQHMQN 356

Query: 209 EFIVLA-DTGETQVFCSKDFMDFPIPSENTDFDDIISLN---------SIVEQWTAPYAA 258
           E    A D  + ++F S  +++    ++ + +D  +                +       
Sbjct: 357 EMAHYATDCWDAELFTSYGWIECVGCADRSAYDLSVHKKKTGAPLVVRQTRAEPLRIEEW 416

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGH-----IFYFGTKYSLPMSATFKG--------- 304
             D+  +K      ++ +     IE         F    + +  +     G         
Sbjct: 417 QVDIDKKKFGPRFKKDSKTVENAIEALTQDMREKFSLDLEKNGKIEIEVDGVGEGKVEIG 476

Query: 305 ------------ADGKDHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVA 345
                        + +++   +     G  R++  ++E ++           + +P +VA
Sbjct: 477 KDLVQIEKRMRVENVREYTPNVIEPSFGIGRILYCLMEHAYWSRPDDEARGVLSFPPAVA 536

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P K+ L+ +  H    +   +++  +L ++G     DD    IG +++  D LG P  + 
Sbjct: 537 PTKVLLVPLSTH-ASFQPLIQRLTLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGIT 595

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              + V D+   ++ R T  +   S +E+ N      
Sbjct: 596 ADFQSVKDNTFTLRDRDTTKQVRASEDEICNAVKSLV 632



 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M
Sbjct: 36 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDTSMLTPHEVLKTSGHVDKFADWM 93


>gi|229817347|ref|ZP_04447629.1| hypothetical protein BIFANG_02609 [Bifidobacterium angulatum DSM
           20098]
 gi|229785136|gb|EEP21250.1| hypothetical protein BIFANG_02609 [Bifidobacterium angulatum DSM
           20098]
          Length = 491

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 156/486 (32%), Gaps = 63/486 (12%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M +SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAQSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              T    + +    +    +WV SG    +   +  +   N          EE   +  
Sbjct: 54  MVVTRGDVVGVDTSIILPTPVWVASGHVAVFNDPL--VECLNCHKRQRSDKLEESYAEKH 111

Query: 119 RSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNK 176
              +               + +  E R    ++R+    ++D  S   L PE ++  +  
Sbjct: 112 GDKLPENGMADIACPDCGTRGKWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVD 171

Query: 177 MFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                     +   G+ +         +G    +E         T+ F   +   F  P 
Sbjct: 172 FKNVMTSSRKKPPFGIAN---------MGKSFRNEITPGNFIFRTREFEQMEMEFFVKPG 222

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--- 291
           E+  +                    +  H E   + L    +   R +++ + F F    
Sbjct: 223 EDEAWHQYWIDARTQWYLDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYKFGFQGSD 279

Query: 292 ----------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSH 333
                     T + L   A   G D        G+ +   +     G  R +   +  ++
Sbjct: 280 WGELEGVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMCFLVDAY 339

Query: 334 DGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           D                +     +AP K +++ +     +     +K+ A L +    + 
Sbjct: 340 DVDEAPNTKGGVDKRTVLHLDPRLAPVKAAVLPLSKKPDLQN-VAQKLAADLRQHEWMID 398

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +E +SL++V +Y + 
Sbjct: 399 YDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQERVSLDKVADYVAE 457

Query: 441 RFSNNR 446
           R    R
Sbjct: 458 RIGEKR 463


>gi|209549091|ref|YP_002281008.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065105|sp|B5ZMG0|SYS_RHILW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|209534847|gb|ACI54782.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 427

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +  A+    +G    + +++ +  D         PT
Sbjct: 176 RALGQFMIDLHTREHGYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD----GRYLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVREEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E +   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 291 DAESAVAEHERMTACAEDVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSVCGDFQARRMNARY 368


>gi|241662756|ref|YP_002981116.1| histidyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240864783|gb|ACS62444.1| histidyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 450

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 131/444 (29%), Gaps = 56/444 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 26  KGMNDLLPADAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMY 85

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 86  TFTDALNGEQLTMRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 141

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +              M     R++  LGL  + +          RA      
Sbjct: 142 QFHQVGVEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQADERAAHRADL 198

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F  + D  E             + ++N    D+ +    +  +    +      
Sbjct: 199 IKYLEGFQDILD--EDGKRRLYSNPLRVLDTKNPALQDMAAGAPKLIDYLGDESRAHFEG 256

Query: 264 NEKLFDSLPENKR---VSARGIEV-------GHIFYFGTKYSLP----MSATFKGADGKD 309
            +KL  +            RG++              G + ++          +   GK 
Sbjct: 257 VQKLLKANNIPFTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKP 316

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R    +IE   + K            + +++     QV         
Sbjct: 317 APA--CGWAMGVER----IIELLREEK---LEPEAQGCDVYIVHQGDEAQVQALIA---A 364

Query: 370 ARLSKVGCDVFWDD----MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT- 423
            RL   G DV              SQF  AD  G    VI+G   V+    +IK  R   
Sbjct: 365 ERLRDAGLDVILHASPEGRNGSFKSQFKRADASGASYAVIIGDDEVTQGVAQIKPLRGDP 424

Query: 424 --GIREDMSLEEVINYASHRFSNN 445
               ++ +  +++++        N
Sbjct: 425 AADAQQTVPSDQLVDRLIDALVAN 448


>gi|225076272|ref|ZP_03719471.1| hypothetical protein NEIFLAOT_01312 [Neisseria flavescens
           NRL30031/H210]
 gi|224952396|gb|EEG33605.1| hypothetical protein NEIFLAOT_01312 [Neisseria flavescens
           NRL30031/H210]
          Length = 431

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMKGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D + K     PT E  +T+     I +  
Sbjct: 195 YTPYIVDDLTLQGTGQLPKFAEDLFHVTRGGDESKKTQYLIPTAEVTLTNTVADSIVAGS 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINVPAALQPY 421


>gi|153955741|ref|YP_001396506.1| histidyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219856110|ref|YP_002473232.1| hypothetical protein CKR_2767 [Clostridium kluyveri NBRC 12016]
 gi|189082288|sp|A5N1Y9|SYH_CLOK5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782325|sp|B9E5P3|SYH_CLOK1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146348599|gb|EDK35135.1| HisS [Clostridium kluyveri DSM 555]
 gi|219569834|dbj|BAH07818.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 416

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 66/425 (15%), Positives = 120/425 (28%), Gaps = 39/425 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        +    +   +  G  E+  P  +  +L+        D 
Sbjct: 1   MAIQAPKGTKDILPTESYKWHYLEDKFKNIADSYGYREIRTPVFEYTELFQRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR  +++   P         F          P   +      R E      
Sbjct: 61  VQKEMYTFLDRAGRSLTLKPEGTSPAVRAFVEGSLYNEAQPTKLFYFTPVLRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS- 207
             R RE       +F             +    +RI+  LG+  I +   S  IG     
Sbjct: 118 KGRLREHHQFGIEAFGSREASLDAE---VISLAMRIYEELGVDGIELNINS--IGCSKCR 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK- 266
            E+  +  T  ++ + +          +N          S  E           + +E  
Sbjct: 173 KEYNDILKTFLSKQYDNICDTCKTRFHKNPMRILDCKEKSCREIVKDAPLMLHHLCDECR 232

Query: 267 -LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----------------GKD 309
             F+SL         G ++  +   G  Y           +                G  
Sbjct: 233 EHFESLKMYLEGLGIGYKINPLIVRGLDYYSKTVFEIINKNITICGGGRYDYLIEEVGGP 292

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G +G+G  R +  +        GI  P          + I       R     + 
Sbjct: 293 KMPAVG-FGMGIERTLLTL-----SENGIEIPK----LPYIDLYIGIIGDKARIKALTLT 342

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L +      +D M   + ++   A+ +     VI+G   +     + K    G + ++
Sbjct: 343 NKLREKNVRCEYDHMNRSVKAEMKYANKINARFTVILGENEIESGIAKFKRMEDGQQFEI 402

Query: 430 SLEEV 434
           SL ++
Sbjct: 403 SLGDL 407


>gi|294625158|ref|ZP_06703801.1| seryl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600530|gb|EFF44624.1| seryl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 426

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++ +  D  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFQ-TDVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVREEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           +    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACA-PEDSDAEHQRMTRCAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|190891515|ref|YP_001978057.1| seryl-tRNA synthetase [Rhizobium etli CIAT 652]
 gi|238692532|sp|B3PXU3|SYS_RHIE6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|190696794|gb|ACE90879.1| seryl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 427

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +  A+    +G    + +++ +  D         PT
Sbjct: 176 RALGQFMIDLHTREHGYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD----DRYLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVREEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             + +   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 291 DADSAIAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSVCGDFQARRMNARY 368


>gi|291457507|ref|ZP_06596897.1| glycine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381342|gb|EFE88860.1| glycine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 490

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 162/493 (32%), Gaps = 77/493 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M +SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAQSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMT 115
              T    + +    +   ++WV SG    +     E L    RN    +     E+   
Sbjct: 54  MVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECLNCHKRNRADKLEESYAEKHGD 113

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
            +  + +K              + +  E R    ++R+    ++D  S   L PE ++  
Sbjct: 114 TMPENGMKD-----IVCPNCGTRGQWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGI 168

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDF 227
           +             +  K++   + S P      +G    +E         T+ F   + 
Sbjct: 169 F-------------VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEM 215

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F  P  + ++                    +  H E   +   +    S R +++ + 
Sbjct: 216 EFFVEPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKE---KLSHYSKRTVDIEYK 272

Query: 288 FYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           F F              T Y L   +   G D        G+ +   +     G  R + 
Sbjct: 273 FGFQGSDWGELEGIANRTDYDLTAHSKRSGEDLCYFNQATGEKYIPYVIEPAAGLTRSLM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +  ++D                +     +AP K +++ +    +  R   + +   L 
Sbjct: 333 CFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPE-LRTVAQNLADDLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  ++ ++L++
Sbjct: 392 FNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQDRVALDK 450

Query: 434 VINYASHRFSNNR 446
           V +Y + R    R
Sbjct: 451 VADYVAARIGEKR 463


>gi|309782320|ref|ZP_07677047.1| histidine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918938|gb|EFP64608.1| histidine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 450

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 131/444 (29%), Gaps = 56/444 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 26  KGMNDLLPADAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMY 85

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 86  TFTDALNGEQLTMRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 141

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +              M     R++  LGL  + +          RA      
Sbjct: 142 QFHQVGVEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQAEERAAHRADL 198

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F  + D  E             + ++N    D+ +    +  +    +      
Sbjct: 199 IKYLEGFQDILD--EDGKRRLYSNPLRVLDTKNPALQDMAAGAPKLIDYLGDESRAHFEG 256

Query: 264 NEKLFDSLPENKR---VSARGIEV-------GHIFYFGTKYSLP----MSATFKGADGKD 309
            +KL  +            RG++              G + ++          +   GK 
Sbjct: 257 VQKLLKANNIPFTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKP 316

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R    +IE   + K            + +++     QV         
Sbjct: 317 APA--CGWAMGVER----IIELLREEK---LEPEAQGCDVYIVHQGDEAQVQALIA---A 364

Query: 370 ARLSKVGCDVFWDD----MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT- 423
            RL   G DV              SQF  AD  G    VI+G   V+    +IK  R   
Sbjct: 365 ERLRDAGLDVILHASPEGRNGSFKSQFKRADASGASYAVIIGDDEVTQGVAQIKPLRGDP 424

Query: 424 --GIREDMSLEEVINYASHRFSNN 445
               ++ +  +++++        N
Sbjct: 425 TADAQQTVPSDQLVDRLIDALVAN 448


>gi|308176710|ref|YP_003916116.1| glycine--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744173|emb|CBT75145.1| glycine--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 461

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 157/470 (33%), Gaps = 80/470 (17%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQSADL 79
            + + G I+  S+  + + PLG +  +N+        +R  ++  G   +    +    +
Sbjct: 19  FVFQAGEIYGGSRSAWDYGPLGTELKENIKREWWQSFVRGREDMVG---LDSSIILPKAV 75

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           W  SG   ++     E ++   R+ +  +                 ++ ++      +I 
Sbjct: 76  WEASGHVATFTDPLVECIQCHKRHRQDHLIEAFE--------AKKGRAPKDG---MSEIA 124

Query: 137 LKFRD------ELRPRFGVMRSREFLM---KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
                      E +   G+M++  FL     +A    + PE ++     +FV++  +   
Sbjct: 125 CPDCGTKGQFTEPQMFSGLMKT--FLGPVDSEAGLAFMRPETAQ----GIFVNFANVLTA 178

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                       G IG    +E         T+ F   +   F  P +   F D    + 
Sbjct: 179 ---SRKKPPFGIGQIGKAFRNEITPGNFIFRTREFEQMEIEFFTAPEDAPAFFDQWVKDC 235

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKY 294
                       +    +   D            I+  + F F              T Y
Sbjct: 236 WAWFLDLGIKEENLRQFDVPEDERAHYSAG---TIDFEYRFGFQGSEWGELMGVANRTDY 292

Query: 295 SLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------- 337
            L   A   GA+        G+ +   +     G  R + A +  ++             
Sbjct: 293 DLSSHAKASGAELSYFNQATGERYTPYVIEPSFGLTRSMMAFLVDAYTEDEAPNTKGGVD 352

Query: 338 ----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               +     +AP K +++ + + ++      + + A L K   ++ +DD G  IG ++ 
Sbjct: 353 KRTVLKMDPRLAPVKAAVLPL-SRNENLSPKAKDLAAELRK-RWNIDFDDAGA-IGRRYR 409

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D +G P  + V    + D  V I+ R T  +E +SL++V  Y S R +
Sbjct: 410 RQDEIGTPFCITVDFDTLDDQAVTIRERDTMAQERVSLDQVTAYLSERLN 459


>gi|240850247|ref|YP_002971640.1| seryl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267370|gb|ACS50958.1| seryl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 425

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 89/305 (29%), Gaps = 72/305 (23%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   N  G  E+S+P L   ++   + +   + +++ R  D          T
Sbjct: 176 RALGQFMLDVHVNEHGYTEVSIPFLVRDEIVYGAAQLPKFAEDLFRTTD----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I    +LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLTNLVNDEILEISDLPLRFSSLSPCFRSEAGAAGRDTRGMLRQHQFWKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           + E S     +M      I  RLGL    +   +G +G                      
Sbjct: 291 SEEQSLIELERMTECAEDILKRLGLPFRTVVLSTGDMG---------------------- 328

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                                 I                    D                
Sbjct: 329 --------------FAARKTYDIEVWLPGQECYREISSCSVCGDFQGRR----------- 363

Query: 286 HIFYFGTKYSLPMSATFKGA-DGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPD 342
                       M+A ++   D K H+V  +   G    R + AV+E+     G II PD
Sbjct: 364 ------------MNARYRTEGDKKLHFVHSLNGSGTAVGRCLIAVLENYQQADGSIIIPD 411

Query: 343 SVAPF 347
            + P+
Sbjct: 412 VLQPY 416


>gi|319638614|ref|ZP_07993376.1| seryl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400363|gb|EFV81022.1| seryl-tRNA synthetase [Neisseria mucosa C102]
          Length = 431

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ       +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMKGQIAHLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D + K     PT E  +T+     I +  
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKKTQYLIPTAEVTLTNTVADSIVAGS 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385


>gi|149183345|ref|ZP_01861783.1| glycyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148848942|gb|EDL63154.1| glycyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 455

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 146/445 (32%), Gaps = 59/445 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 28  WDYGPLGVELKNNIKKAWWKKFIQESPYNVGLDASILMNPQTWVASGHVGNFNDPMIDCK 87

Query: 98  D---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +   R+    I     +E   ++    +   R              DE         SRE
Sbjct: 88  NCKTRHRADKIIENALDEKGVEMIVDGLPFERMAEIM---------DEYEIACPSCGSRE 138

Query: 155 FL--MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMR----AESGPIGGD 205
           F    +    F      ++ S N++F    +   IF         MR       G IG  
Sbjct: 139 FTEIRQFNLMFKTHQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKVPFGIGQIGKS 198

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +E      T  T+ F   +   F  P E+ ++             T      +    +
Sbjct: 199 FRNEITPGNFTFRTREFEQMELEFFCKPGEDLEWHSYWREFCKNWLLTLGMKEDNMRLRD 258

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD--------G 307
              D L      +    ++ + F FG          T + L         D         
Sbjct: 259 HDDDELSHYSNATT---DIEYKFPFGWGELWGISDRTDFDLKRHMEHSNEDFHYMDPQTN 315

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQ 359
           +          +GA RV  A +  +++ +         + +  ++APFK +++ +     
Sbjct: 316 EKFVPYCIEPSLGADRVTLAYLCDAYEEEELENEKRTVLRFHPALAPFKAAVLPLSKK-- 373

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              D   K+Y  LSK   D+  D D    IG ++   D +G P  +      V D +V +
Sbjct: 374 -LSDEAFKVYEELSK---DLMVDFDETASIGKRYRRQDEIGTPFCITFDFDSVEDGQVTV 429

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  M + EV N+   +  
Sbjct: 430 RDRDTMDQVRMPISEVKNFLEEKIQ 454


>gi|294496132|ref|YP_003542625.1| histidyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292667131|gb|ADE36980.1| histidyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 413

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 143/419 (34%), Gaps = 32/419 (7%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
            +G   +LP   +    V   +R+  +R G  E+  PT ++ +L+  +SG  +    E+ 
Sbjct: 6   PRGTRDFLPENTRLRRFVENRMRDVVSRWGYHEIITPTFENLELFTLKSG--EGVTGEIY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             +D+ D+ +   P     +  ++ + +++    P   +  +  FR E RP+ G  R RE
Sbjct: 64  NFSDKGDRELALRPELTAPVMRMYVNEMQAT-PRPLKLFYFENCFRYE-RPQKG--RFRE 119

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV-- 212
           F      +   +   +      +    +      G   +        I  +L  E     
Sbjct: 120 FWQFGVETIGSSRPDADAEVIALAEEMIESVGIKGDLRVGHLGIIRHILKELEAEQQTKI 179

Query: 213 ------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   DTG              I +     +++  L SI  +     A       E+
Sbjct: 180 MRLVDKKDDTGLDDYL-------EQINASIELRNELFELVSITGEDAIEKARQIVGDIEE 232

Query: 267 LFDSLPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           L       + + A  +E    F    G  Y   M      ++        G      + +
Sbjct: 233 LHKFEELTQILDAYNVEYSMDFGIARGLDYYTGMVFEIYASNLGAQNQICGGGSYQLIHL 292

Query: 325 VAAVIESSHDGKGIIWPD-----SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                +    G G+ +        + P +   + + A D    DA   I   L +    V
Sbjct: 293 FGGG-DVPSTGFGLGFDRIMEICELEPEQKKEVVLVATDDTRLDAI-GIARELRRK-VPV 349

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + D M      Q + A+ +G    VIVG + +   KV +K   +G +  +++EE   + 
Sbjct: 350 YLDIMKRNFKGQLSHANNIGARYVVIVGKREMEAGKVTLKDMGSGEQHQLTVEEAREHI 408


>gi|294664247|ref|ZP_06729621.1| seryl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605989|gb|EFF49266.1| seryl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 426

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++ +  D  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFQ-TDVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVREEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           +    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACA-PEDSDAEHQRMTRCAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|255323744|ref|ZP_05364872.1| glycine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255299234|gb|EET78523.1| glycine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 459

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 71/463 (15%), Positives = 155/463 (33%), Gaps = 68/463 (14%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVE 82
           L+ + G I+  S+  + + PLG +  +N+         +     + +    +Q   +WV 
Sbjct: 17  LVYQAGEIYGGSRSAWDYGPLGVELKENIKRQWWRHMVQSRADVVGVDTSVIQPRQVWVS 76

Query: 83  SGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRN----LPFTFYQ 134
           SG  + +   +  +  R+     +A      +EE       + +    +     P  +  
Sbjct: 77  SGHVEVFSDPL--VESRHTGKRYRADDLIEAYEEKHGHEPENGLADINDPETGQPGDWT- 133

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                  E +   G++++    + D      L PE ++  +            R+     
Sbjct: 134 -------EPKAFSGLLKTFLGPVDDEQGLHYLRPETAQGIFVNFKNVMTS--SRMKPPFG 184

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                   IG    +E         T+ F   +   F  P E+ ++      +       
Sbjct: 185 IA-----NIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDDRYNWYVD 239

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSA 300
                 +    E   +   +    S R ++V + F F              T Y L + A
Sbjct: 240 LGIKEENLRLYEHPKE---KLSHYSKRTVDVEYAFGFKGSKWGELEGVANRTDYDLSVHA 296

Query: 301 TFKGAD-------GKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG-------------II 339
              G D         + +   +     G  R + A +  ++D +              + 
Sbjct: 297 KGSGEDLSYYDQANDERWIPYVIEPAAGLGRSMMAFLVDAYDEEEAPNAKGGTDKRVVLR 356

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +AP K++++ +   ++   +   K+  +L +   +V +D  G  IG ++   D +G
Sbjct: 357 LDRRLAPIKVAVLPLSKKEE-LSEPARKLADKL-RAHWNVDFDVSGA-IGRRYRRQDEIG 413

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            P  V      + D  V ++ R T  +E + L+++  Y + R 
Sbjct: 414 TPFCVTFDFDTLEDDAVTVRERDTMEQERVKLDDLEAYLAARL 456


>gi|138897004|ref|YP_001127457.1| glycyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166227934|sp|A4ITQ8|SYG_GEOTN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|134268517|gb|ABO68712.1| Glycyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 466

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 135/438 (30%), Gaps = 44/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML--- 94
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 38  WDYGPLGVELKNNIKRAWWKKFVQESPHNVGLDAAILMNPKTWEASGHLGNFNDPMVDCK 97

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVMRSR 153
           +   R+    +     EE   ++    +   +       Y I                 R
Sbjct: 98  QCKARHRADKLIEQALEEKGIEMVVDGLPLAKMEELIREYDIACPEC----GSRDFTNVR 153

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR----AESGPIGGDLSHE 209
           +F +       +T   +   Y +   +   IF         MR         IG    +E
Sbjct: 154 QFNLMFKTYQGVTESSANEIYLR-PETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNE 212

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEK 266
                 T  T+ F   +   F  P E   + D                        H ++
Sbjct: 213 ITPGNFTFRTREFEQMELEFFCKPGEELKWFDYWKQFCKEWLLSLGMNEEHIRLRDHTKE 272

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKGAD--------GKDHYVQM 314
                             G    +G    T Y L       G D         + +    
Sbjct: 273 ELSHYSNATTDIEYQFPFGWGELWGIASRTDYDLKQHMEHSGEDFHYLDQETNERYIPYC 332

Query: 315 GSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDAC 365
               +GA RV  A +  ++D + +             ++AP+K +++ +        D  
Sbjct: 333 IEPSLGADRVTLAFMIDAYDEEELEDGTTRTVMHLHPALAPYKAAVLPLSKK---LGDGA 389

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +IY  L+K    V +D+ G  IG ++   D +G P  +    +   D +V ++ R T  
Sbjct: 390 RRIYEELAKH-FMVDYDETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTME 447

Query: 426 REDMSLEEVINYASHRFS 443
           +  + + E+  +   + +
Sbjct: 448 QVRLPIGELKAFLDKKIA 465


>gi|217316841|gb|ACK37826.1| putative glutamyl-prolyl tRNA synthetase [Hippolyte bifidirostris]
          Length = 134

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  +  +  Y    S+G+   R +  ++    D KG+
Sbjct: 17  RAIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGLT-TRTIGVMVMVHGDNKGL 75

Query: 339 IWPDSVAPFKISLINIKA-------HDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + P  VA  +  +I +            +  DAC K+   L   G  V  D  
Sbjct: 76  VLPPRVATIQAVVIPVGKTVKTTDQEKSIISDACSKLTETLRAHGVRVHNDQR 128


>gi|226941475|ref|YP_002796549.1| Sys [Laribacter hongkongensis HLHK9]
 gi|254783032|sp|C1DBY7|SYS_LARHH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226716402|gb|ACO75540.1| Sys [Laribacter hongkongensis HLHK9]
          Length = 426

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 11/213 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     +  G  E+  P + +A     +G+   + +++ R+  R D+   
Sbjct: 169 ARLHRALAQFMLNTHADEHGYTEVYTPYMVNATSMYGTGQLPKFEEDLFRV-PRGDENFY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  I    +LP  +      FR E     R   G++R  +F   +  
Sbjct: 228 LVPTAEVPVTNFVRDEIVKAADLPLRYVAHTPCFRSEAGAYGRDTRGMIRQHQFDKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S ++   +      I  +LGL    +   +G +G         E  + A   
Sbjct: 288 QV-VRPEESLNALETLTGHAETILKKLGLPYRVIVLCTGDMGFGSQKTYDIEVWLPAQDT 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++       DF        F D    N +V 
Sbjct: 347 YREISSCSSMGDFQARRMQARFKDEAGKNQLVH 379


>gi|313665392|ref|YP_004047263.1| glycine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949347|gb|ADR23943.1| glycine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 456

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 123/365 (33%), Gaps = 70/365 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +      + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTNQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F                                            
Sbjct: 208 FIFRTREFEQMELEFF-------------------------------------------- 223

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  D+ +   +  +    F     + D ++     ++ ++       TSD+     
Sbjct: 224 ---FDPNDSNDWFKYWLEQIEIFLTQKISLDKNNYKIRENLKDELAHYALKTSDIEFNFP 280

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           F              ++          S       K  + +     +    +G  R++ A
Sbjct: 281 FGWGELWGISHRSDFDL----KVHQDLSKEDLTVLKEENNQKILANVIEPSVGVERLMLA 336

Query: 328 V---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +         +E ++    +  P ++AP+++++  +            +++  L K   D
Sbjct: 337 IFWQAYTEEQLEENNSRIVLKLPYNLAPYQVAITPLSKQ---LNQNANQLFLELLK-DFD 392

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + + ++ ++ 
Sbjct: 393 AVYDETGN-IGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILISQLKDFL 451

Query: 439 SHRFS 443
           + +F+
Sbjct: 452 NSQFN 456


>gi|261417441|ref|YP_003251124.1| glycyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373897|gb|ACX76642.1| glycyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328095|gb|ADL27296.1| glycine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 470

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 156/476 (32%), Gaps = 80/476 (16%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I   S+   G+   + + P G +   N+  +  ++   +    + +    L +
Sbjct: 15  LCKRRGFIFPGSEIYDGLANTWDYGPYGVELKRNIKNLWWKKFVTSRHDVLGLDSSILLN 74

Query: 77  ADLWVESGRYDSYGK---------EMLR----LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             +W  SG   ++           E  R    L ++  +    G   +EV   +  + I+
Sbjct: 75  PRVWKASGHVGNFSDPLVDCLACHERFRADQLLEEKLGEGCCAGKNFDEVHQMMVDNKIE 134

Query: 124 SYRNLPFTFYQ---IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                   + +     L F+ E+    G          +     L PE ++  +      
Sbjct: 135 CPTCGKTDWTKPRAFNLMFQTEIGVIEG----------EGNKVYLRPETAQGIFVDFRNI 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +  R+           G IG    +E         T+ F   +   F  P    D+ 
Sbjct: 185 VDNVRPRIPF-------GVGQIGKSFRNEITPGNFIFRTREFEQMELEFFCEPGTELDWY 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--------- 291
           +                    +       +  E    S    +V + F FG         
Sbjct: 238 NFWRKYCFEWLVNDLGVKREKLR--LREHAKEELSHYSNGTTDVEYEFPFGWGELWGIAS 295

Query: 292 -TKYSLPMSAT-------FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---- 338
            T Y L            +      K +   +    +G  R++  ++ ++++ + +    
Sbjct: 296 RTNYDLTQHQNESKVKQEYIDPVQNKRYIPYVVEPSLGVERLLLVLLCNAYEVEKLENDE 355

Query: 339 ----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                +   VAP K++++ +       ++  E++Y +L     +V +D+  + IG ++  
Sbjct: 356 RTVLHFDPKVAPVKVAVLPL-VKKGKVKEKAEELYQKLLN-RWNVEYDET-QSIGKRYRR 412

Query: 395 ADLLGFPLQVIV-------GSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRF 442
            D LG P  V V       G    +    V ++ R +  +E ++++++  Y   + 
Sbjct: 413 QDELGTPFCVTVDFDTVGEGESDPAKLGYVTVRERDSMKQELVAIDKLEAYLFEKL 468


>gi|241759885|ref|ZP_04757985.1| serine--tRNA ligase [Neisseria flavescens SK114]
 gi|241319893|gb|EER56289.1| serine--tRNA ligase [Neisseria flavescens SK114]
          Length = 431

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMKGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D + K     PT E  +T+     I +  
Sbjct: 195 YTPYIVDDLTLQGTGQLPKFAEDLFHVTRGGDESKKTQYLIPTAEVTLTNTVADSIVAGS 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINVPAALQPY 421


>gi|325567669|ref|ZP_08144336.1| serine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325159102|gb|EGC71248.1| serine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 425

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + ++     G  EM  P + ++     +G++  + +++ +LA
Sbjct: 163 FVYYKGLGARLERALYNFMLDQHVYEHGYTEMITPYIVNSQAMFGTGQFPKFKEDVFQLA 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +   +   PT E  +T+ ++  I     LP  F  +   FR E     R   G++R  
Sbjct: 223 DTD---LTLIPTAEVPLTNYYQGEILEQEQLPAYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM  +   I  +L L    +   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DAEHSYEELEKMTANAEDILQKLNLPYRVLSLCTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D       + 
Sbjct: 339 VWIPAQEMYREISSCSNCEDFQARRAMIRYRDQEGKIHYMH 379


>gi|229062588|ref|ZP_04199898.1| Glycyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228716691|gb|EEL68387.1| Glycyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 458

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEDELSH---------------YSNATTDIEFRFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFVV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|258653517|ref|YP_003202673.1| histidyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258556742|gb|ACV79684.1| histidyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 424

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 62/428 (14%), Positives = 127/428 (29%), Gaps = 43/428 (10%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KGI  + P   +  + +   +    +R G   + +P  +   L+        D   KE
Sbjct: 6   APKGIPEYYPPVSRTFEAIRRTLLAAADRAGYGPIELPVFEDTGLFARGVGESTDVVSKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR  +++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 66  MYTFADRGGRSVTLRPEGTAGVMRAVIEHSLDRGPLPVKLVYAGPFFRYE-RPQAG--RY 122

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +              +       F  +GL    +   S       P   + 
Sbjct: 123 RQLQQVGVEAIGSDDPALDAEVIAIAD---EGFRDVGLSQFRLDLTSLGDAVCRPAYRER 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              F+   D  E     ++      +  +     + ++   ++                +
Sbjct: 180 LIAFLDGLDLDEPTRERARLNPLRVLDDKRPAMQEQLAGAPLMLDHLCDACREHFDRVRQ 239

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
           + D+L     ++ R             E  H    G +  +     + G  A+     + 
Sbjct: 240 VLDALSVPYELNPRMVRGLDYYTRTTFEFVHP-LLGAQSGMGGGGRYDGLMAELGGQSLS 298

Query: 314 MGSYGIGAMR-VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              +G+G  R ++AA  E    G          P +  +  +             +   L
Sbjct: 299 GIGFGLGVDRTLLAAQAEGLTVGH---------PARCEIFGVPMGPDSSLRLA-TLAGEL 348

Query: 373 SKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            + G  V         +   + A A   G  L +++G + + D  V ++   +G +    
Sbjct: 349 RRAGYRVDMAYGGRALKTAMKMADAS--GAALALVLGDREIVDGTVVVRDLRSGEQNAYP 406

Query: 431 LEEVINYA 438
           + +++   
Sbjct: 407 MGDLVQVV 414


>gi|260172254|ref|ZP_05758666.1| glycyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315920560|ref|ZP_07916800.1| glycyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313694435|gb|EFS31270.1| glycyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 513

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 118/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M              +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 197 MFSTEMGSTSEGAMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      + K     L+    LG              GD S
Sbjct: 257 FIFRMREFEQMEMQFF-VKPGTELDWFKKWKEIRLKWHKALGF-------------GDAS 302

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           + +                         +       +   I       +     +H+   
Sbjct: 303 YRYH----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTN 340

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                       K+S      F     + +   +    IG  R+  +
Sbjct: 341 FDLSQH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLS 382

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++ +S+  + +           P ++AP K++++ +   D    +   ++   L K    
Sbjct: 383 IMSASYCEEQLENGESRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREVIDSL-KFHFH 440

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  
Sbjct: 441 CQYDE-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNII 499

Query: 439 SHRFS 443
           + R S
Sbjct: 500 ADRVS 504


>gi|255012924|ref|ZP_05285050.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|298374179|ref|ZP_06984137.1| glycine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|298268547|gb|EFI10202.1| glycine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 514

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 122/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +M   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 DMGSTADGATKIYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K   + L+    LGL     R           H+  
Sbjct: 261 MREFEQMEMQFF-VRPGEEIEWFKKWKSTRLKWHQALGLGDQKYR----------YHDHE 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I  +    +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAATDIEFEMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  RV  +++  
Sbjct: 345 QH------------------EKFSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSIMAG 386

Query: 332 SHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +  E+I   L +      +D
Sbjct: 387 SYCEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIINML-RFDFRCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  + + 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVSIDKLHDIITEKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|226294349|gb|EEH49769.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 656

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 129/397 (32%), Gaps = 82/397 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-YNKMFVSYLRIFH 186
           +PF    I   FR+E+ PR G++R REFLM +   F     G KH  ++++    L    
Sbjct: 240 MPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHFVDPDGGKKHPRFHEVQDLELSFLD 299

Query: 187 RLGLKSIPMRAESGPIGGDLSHE----------------FIVLADTGETQVFCSKDF--- 227
           R    S   + E   IG  ++ +                F++     E+++   +     
Sbjct: 300 REVQLSGSTKVERMTIGKAVADKIVDNETLGYFLARIQLFLLKIGIDESKIRMRQHMQNE 359

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR-GIEVGH 286
           M                            A    VH  K    L   +  S    IE   
Sbjct: 360 MAHYAKDCWDAELFTTYGWIECVGCADRSAYDLTVHKNKTGAPLFVRETRSEPLRIEEWQ 419

Query: 287 IF----YFGTKYSL-------PMSATFKG----------ADGK----------------- 308
           I      FG ++          ++A  +            +GK                 
Sbjct: 420 IDLDKKKFGPRFRKDGKAVEAAVNALSQDLLAKLSLDLTENGKIEIDVDGVRSGKVELEK 479

Query: 309 ---------------DHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAP 346
                          ++   +     G  R++A ++E  +           + +P  VAP
Sbjct: 480 DIINIEKRTRVENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGVLSFPPIVAP 539

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            K+ L+ + +++   +    ++  +L ++G     DD    IG ++A  D LG P  + V
Sbjct: 540 TKVLLVPL-SNNPSFQPLVHRLTLKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITV 598

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + V D+   ++ R T  +   S EE+         
Sbjct: 599 DFQSVKDNTFTLRERDTTKQVRASEEEICKAVKSLVE 635



 Score = 40.7 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G     NV  + R+        +E+    L   D+   SG  D +   M
Sbjct: 38 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDCTMLTPHDVLKTSGHVDKFADWM 95


>gi|313837260|gb|EFS74974.1| glycyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314972031|gb|EFT16129.1| glycyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 472

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 122/398 (30%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D      +   T + +  +   
Sbjct: 132 EEINCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDEAGLHYLRPETAQGIFVNFQN 185

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +                    
Sbjct: 186 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEM------------------- 226

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                        EF V   T E      + ++D          
Sbjct: 227 -----------------------------EFFVEPGTDEE---WHQYWIDERTNWYTDLG 254

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLP 297
            +  +L             +    + +       +      GI     F  GT  K+S  
Sbjct: 255 INADNLRHYEHPKEKLSHYSKRTVDIEYKFGFAGSDWGELEGIANRTDFDLGTHTKHSGK 314

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
             + F  A  K +   +     G  R + A +  ++                 +     +
Sbjct: 315 DLSYFDQAQNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 374

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP K +++ +  +          + A+L +   +V +DD    IG ++   D +G P  V
Sbjct: 375 APVKAAVLPLSRNSD-LSPKARDLAAQLRQWW-NVDFDDAQA-IGKRYRRQDEIGTPFCV 431

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D+ V ++ R T  +E ++L++V +Y + R 
Sbjct: 432 TVDFDTLDDNAVTVRDRDTMSQERIALDKVEDYLAERL 469


>gi|83319862|ref|YP_424478.1| glycyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123753722|sp|Q2SRY5|SYG_MYCCT RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|83283748|gb|ABC01680.1| glycyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 456

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 123/365 (33%), Gaps = 70/365 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +      + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTNQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +                                                
Sbjct: 208 FIFRTREFEQMELEF--------------------------------------------- 222

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             F    D+ +   +  +    F     + D ++     ++ ++       TSD+     
Sbjct: 223 --FFDPNDSNDWFKYWLEQIEIFLTQKISLDKNNYKIRENLKDELAHYALKTSDIEFNFP 280

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           F              ++          S       K  + +     +    +G  R++ A
Sbjct: 281 FGWGELWGISHRSDFDL----KVHQNLSKEDLTVLKEENNQKILANVIEPSVGVERLMLA 336

Query: 328 V---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +         +E ++    +  P ++AP+++++  +            +++  L K   D
Sbjct: 337 IFWQAYTEEQLEENNSRIVLKLPYNLAPYQVAITPLSKQ---LNQNANQLFLELLK-DFD 392

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + + ++ ++ 
Sbjct: 393 AIYDETGN-IGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILISQLKDFL 451

Query: 439 SHRFS 443
           + +F+
Sbjct: 452 NSQFN 456


>gi|321441299|gb|ADW85064.1| glu- + pro-tRNA synthetase [Euclemensia bassettella]
          Length = 134

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +   D ++       S+G+   R +  ++    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSRMFDVVYDDPDTQEKMFVYQNSWGLT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++         +   +  RD CEK+   L   G     D       
Sbjct: 74  GLVLPPRVAEIQVIVVPCGVTASSTQEERKKLRDECEKLVKELVTAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|117924380|ref|YP_864997.1| seryl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|166222739|sp|A0L6J8|SYS_MAGSM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|117608136|gb|ABK43591.1| seryl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 430

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +      G  E+  P L +A+    +G+   + +++ R     D A 
Sbjct: 176 GARLSRALANYMLDLHTGSHGYQEILPPVLTNAECLFGTGQLPKFEEDLFRT---RDDAY 232

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I     LP         FR E     +   G++R  +F   + 
Sbjct: 233 YMIPTAEVPVTNLVREQILEDSQLPMRMTAWTNCFRREAGSAGKDTRGLIRQHQFDKVEL 292

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                 PE S  +  ++     ++   LGL    +   SG +G   S  + + 
Sbjct: 293 VQIR-RPEESYAALEELTGHAEQVLKGLGLPFRTVVLCSGDMGFGASKTYDIE 344


>gi|301312443|ref|ZP_07218359.1| glycine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300829626|gb|EFK60280.1| glycine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 514

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 122/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +M   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 DMGSTADGATKIYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K   + L+    LGL     R           H+  
Sbjct: 261 MREFEQMEMQFF-VRPGEEIEWFKKWKSTRLKWHQALGLGDQKYR----------YHDHE 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I  +    +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAAMDIEFEMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  RV  +++  
Sbjct: 345 QH------------------EKFSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSIMAG 386

Query: 332 SHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +  E+I   L +      +D
Sbjct: 387 SYCEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIINML-RFDFRCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  + + 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVSIDKLHDIITEKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|330833959|ref|YP_004408687.1| glycyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566098|gb|AEB94203.1| glycyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 571

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQV 360
             G   Y  +     G  R +   + S++  K     +  P ++ P+++++  +   +++
Sbjct: 419 EHGIKFYPHVVEPSFGVERCLYLSLLSAYKEKKDRVVLSLPKNIVPYQVAVFPLLDREEL 478

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +KIY  L     +V +DD G  IG ++A  D +G P  + V  + +SD  V ++ 
Sbjct: 479 T-AKAKKIYNMLKD-NFEVLYDDSG-SIGKRYARVDEIGVPYAITVDPQSLSDDTVTVRD 535

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R T  +  +  +++  +    FS+ 
Sbjct: 536 RDTWEQVRIKTQDLNTFIQKLFSDK 560



 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + M   F+   ++ R  LP    Q+    R+E+ PR G++R REF + +   F
Sbjct: 160 YLRPETAQGMFTAFKRVYETTRQKLPLGIAQVGEVARNEISPRQGLVRMREFTIMEVEFF 219

Query: 164 DLTPEGSK 171
            + PE   
Sbjct: 220 -IDPEDKD 226



 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 37 KGIYSWLPLGQKALDNVNAIIRE---EQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           G+Y   P+G +  + +  + R    E+N    +E+  P +  + +   SG  +++  
Sbjct: 28 AGLYDIGPIGTRIRNKIVQMWRRIFVEENSEFVVEIETPMITPSKVLEASGHVENFTD 85


>gi|261365211|ref|ZP_05978094.1| serine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288566473|gb|EFC88033.1| serine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 431

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMKGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D + K     PT E  +T+     I +  
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKKTQYLIPTAEVTLTNTVADSIVAGS 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|45442516|ref|NP_994055.1| histidyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597156|ref|YP_071347.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108808312|ref|YP_652228.1| histidyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108811423|ref|YP_647190.1| histidyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145599495|ref|YP_001163571.1| histidyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149365338|ref|ZP_01887373.1| histidyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162420576|ref|YP_001605023.1| histidyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165926037|ref|ZP_02221869.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937162|ref|ZP_02225727.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008604|ref|ZP_02229502.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212589|ref|ZP_02238624.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399422|ref|ZP_02304946.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421392|ref|ZP_02313145.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423817|ref|ZP_02315570.1| histidyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023540|ref|YP_001720045.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186896251|ref|YP_001873363.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|218929938|ref|YP_002347813.1| histidyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229838457|ref|ZP_04458616.1| histidyl tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895159|ref|ZP_04510335.1| histidyl tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229899024|ref|ZP_04514168.1| histidyl tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901680|ref|ZP_04516802.1| histidyl tRNA synthetase [Yersinia pestis Nepal516]
 gi|270489875|ref|ZP_06206949.1| histidine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294504560|ref|YP_003568622.1| histidyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|29427530|sp|Q8ZCT6|SYH_YERPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81691698|sp|Q668A0|SYH_YERPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122980231|sp|Q1CK90|SYH_YERPN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123245686|sp|Q1C5I9|SYH_YERPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228631|sp|A4TMT6|SYH_YERPP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229470706|sp|B2K9P9|SYH_YERPB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229470707|sp|A9R801|SYH_YERPG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229470708|sp|B1JS06|SYH_YERPY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|45437381|gb|AAS62932.1| histidyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590438|emb|CAH22078.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108775071|gb|ABG17590.1| histidyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|108780225|gb|ABG14283.1| histidyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|115348549|emb|CAL21489.1| histidyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145211191|gb|ABP40598.1| histidyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149291751|gb|EDM41825.1| histidyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162353391|gb|ABX87339.1| histidyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165915025|gb|EDR33637.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922241|gb|EDR39418.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992986|gb|EDR45287.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206520|gb|EDR51000.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960881|gb|EDR56902.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051926|gb|EDR63334.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057987|gb|EDR67733.1| histidyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750074|gb|ACA67592.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186699277|gb|ACC89906.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|229681609|gb|EEO77703.1| histidyl tRNA synthetase [Yersinia pestis Nepal516]
 gi|229687969|gb|EEO80041.1| histidyl tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694823|gb|EEO84870.1| histidyl tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701921|gb|EEO89944.1| histidyl tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262362445|gb|ACY59166.1| histidyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262366548|gb|ACY63105.1| histidyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270338379|gb|EFA49156.1| histidine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294355019|gb|ADE65360.1| histidyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320016014|gb|ADV99585.1| histidyl tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 424

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 140/433 (32%), Gaps = 45/433 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + +I+++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIESILKQVLSGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLPGPDIDAE---LILLTARWWRALGI-FEHVKLELNSIGSLAARADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   ++     +  +    +    
Sbjct: 178 REALVAFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQLLDDAPKLSDYLDEESKQHF 237

Query: 262 VHNEKLFDS---LPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--AD--G 307
               +L D             RG++  +           G + ++     + G      G
Sbjct: 238 AGLCELLDKASIPYTVNERLVRGLDYYNRTVFEWVTHSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACE 366
           +        + +G  R+V  V   + D +        A     +I+     Q       E
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVNADFQVP------ATVDAYVISSGEGAQSAAMLLAE 349

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L  +     +     +   QF  AD  G  + +++G   V+  +V +K    G +
Sbjct: 350 SLRDALPTLKIMTNYGGGNVK--KQFTRADKWGARVALMLGESEVAAQQVVVKDLRNGEQ 407

Query: 427 EDMSLEEVINYAS 439
           E ++  +V    +
Sbjct: 408 ETLAQADVAARLA 420


>gi|329964612|ref|ZP_08301666.1| glycine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328525012|gb|EGF52064.1| glycine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 513

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 120/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTADGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      +     + L+    LG      R           H+  
Sbjct: 261 MREFEQMEMQ-FFVKPGTELDWFKAWKETRLKWHKALGFGDDHYR----------YHDHD 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I       +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKNIKYFDPETNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 SYCEEKLENGETRVVLRLPAALAPVKLAVMPLVKKD-GLPEKAREIIDSL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMEQERVAISELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|194246698|ref|YP_002004337.1| glycyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|193807055|emb|CAP18491.1| Glycyl-tRNA synthetase, class II [Candidatus Phytoplasma mali]
          Length = 452

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 119/358 (33%), Gaps = 68/358 (18%)

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +   K +   P   + +   F++ +K+  + +PF   QI   FR+E+ P   + R+ E
Sbjct: 150 VVEEKSKKVYLRPETAQGIFINFKNILKTARKKIPFGVGQIGKSFRNEITPGNFIFRTCE 209

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F   P   K  +             LG+ S  +  +                
Sbjct: 210 FEQMELEFF-CEPGTQKKWFLYWKKYVNDFLLSLGINSKNLMLKD--------------- 253

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                            +P + + + D  +       W            +         
Sbjct: 254 ----------------YLPEDLSHYSDFTTDVLFNFPWGFSELWGIASRRDFDLKKH--- 294

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
                             ++S   + T+     K  Y   +    +G  R+  A + + +
Sbjct: 295 -----------------QQFSKQ-NLTYLDEKNKKKYLPFVIEPSVGVERLFLAFLFNCY 336

Query: 334 DGKGIIW---------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + + +              +APFK +++ +   +   +   +KIY  L  +  +V +++ 
Sbjct: 337 EEEKLNIKDTRQVLKIHPFLAPFKAAILPLNKKEHSSK--AKKIYKDLM-LYFEVCYEE- 392

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + IG ++   D++G P  + +  +   D    I++R    +  + ++++  Y  ++ 
Sbjct: 393 NQSIGKRYRKHDMIGTPFCITIDCQTFVDETCTIRNRDNLKQHRIFIKDIKKYLENKL 450


>gi|238752474|ref|ZP_04613950.1| Histidyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238709323|gb|EEQ01565.1| Histidyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 424

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 133/438 (30%), Gaps = 55/438 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    ++ E   IG        
Sbjct: 122 YRQFHQMGVEVFGLQGPDIDAE---LILLSARWWRALGISE-HVKLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD  E  V   +  ++                    +                  D  
Sbjct: 173 ARADYREALVAFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDEE 232

Query: 272 PENK------------------RVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
            +                        RG++     +F       G + ++     + G  
Sbjct: 233 SKQHFAGLCELLDQASIPYTVNERLVRGLDYYNRTVFEWVTSSLGAQGTVCAGGRYDGLV 292

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VC 361
               G+        + +G  R+V  V   + + K        A   + LI+     Q   
Sbjct: 293 EQLGGRATPAV--GFAMGLERLVLLVQAVNPEFKVP------ATVDVYLISSGEGTQSAA 344

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +   L+ +     +     +   Q   AD  G  + +I+G   V+  +V +K  
Sbjct: 345 MQLAEHLRDELATLKLMTNYGGGNFK--KQITRADKWGARVALILGESEVAAQQVVVKDL 402

Query: 422 LTGIREDMSLEEVINYAS 439
             G +E ++  +V    +
Sbjct: 403 RNGEQETLAQADVAARLA 420


>gi|268593183|ref|ZP_06127404.1| histidine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311229|gb|EFE51682.1| histidine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 425

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 139/434 (32%), Gaps = 40/434 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP   +    + A ++      G  E+  P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTRVWQKIEATLKNILQGYGFSEIRTPIVEQTPLFRRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRND+++   P +          H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFNDRNDESLTLRPENTAGCVRAGIEHGLLYNQE-QRLWYLGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLAGPDIDAEVILM---TARWWKALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDVHNEKLF 268
             A     +    K   D            + S N  ++             DV + + F
Sbjct: 178 REALVAFLEQHKDKLDEDCKRRMYTNPLRVLDSKNQEIQALLNDAPELFDYLDVESREHF 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM-- 322
           D L +    +     V      G  Y          T  G+ G       G Y       
Sbjct: 238 DGLCKLLEAAGVQYRVNQRLVRGLDYYNRTVFEWVTTALGSQGT--VCAGGRYDGLVEQL 295

Query: 323 --RVVAAVIESSHDGKGIIWPDSVAP--------FKISLINIKAHDQVCRD-ACEKIYAR 371
             R   AV  +    + ++    V P          + L +   + Q       EK+   
Sbjct: 296 GGRATPAVGFAMGMERMVLLVQEVNPEFTADASVADVYLASFGENSQQAAILVAEKVRDA 355

Query: 372 LSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           L  +             G    Q A AD  G  + +I+G   + +++V +K   TG++E 
Sbjct: 356 LPTLRLM-----TNHGGGNFKKQLARADKQGAKIALILGEDEIKNNQVTVKDLRTGVQET 410

Query: 429 MSLEEVINYASHRF 442
           +S + + +  +   
Sbjct: 411 ISQQLMASRIAELL 424


>gi|225869430|ref|YP_002745378.1| histidyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259511958|sp|C0MGD4|SYH_STRS7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225702706|emb|CAX00828.1| histidyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 426

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 142/430 (33%), Gaps = 49/430 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP+       V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPVAAAKWQYVEDVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  RSREF       F      +      M  +Y  +F RLG+K + +   S       
Sbjct: 120 VG--RSREFHQIGVECFGSANPATDVETIAM--AYH-LFERLGIKGVTLHLNSLGNAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D    +      D +  +S 
Sbjct: 175 AAYRQALIDYLSPMRETLSKDSQRRLDENPLRVLDSKEKEDKIAVANAPSILDYLDEDSQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA- 305
                            +             RG++     IF F T+ +        G  
Sbjct: 235 AHFDAVRSML-------EALAIPYVIDTNMVRGLDYYNHTIFEFITEVNQSELTICAGGR 287

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG   Y    +       +    +    D +G+  P       + +  + A   V   A
Sbjct: 288 YDGLVEYFGGPATPGFGFGLGLERLLLILDKQGVELPVEEG-LDVYIAVLGADANV---A 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   + + G  V  D +G +I +QF  AD     + + +G   +   +  +KH  T 
Sbjct: 344 ALALTQAIRRQGFTVERDYLGRKIKAQFKSADTFKAKVVITLGESEIKAGQAVLKHNQTR 403

Query: 425 IREDMSLEEV 434
               +S +++
Sbjct: 404 QEMTVSFDQI 413


>gi|138893692|ref|YP_001124145.1| seryl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166222728|sp|A4IJ96|SYS_GEOTN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|134265205|gb|ABO65400.1| Seryl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 424

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + ++   L 
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYQEVLPPYLVNRASMIGTGQLPKFAEDAFHL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +++     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 222 --DNEDYFLIPTAEVPVTNLHRDEILTADDLPLYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+      I  RLGL    +   +G +G   +  + + 
Sbjct: 280 QFNKVELVKF-VKPEDSYDELEKLTHQAETILQRLGLPYRVVALCTGDLGFSAAKTYDIE 338


>gi|328907189|gb|EGG26955.1| glycyl-tRNA synthetase [Propionibacterium sp. P08]
          Length = 504

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 122/398 (30%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D      +   T + +  +   
Sbjct: 164 EEINCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDEAGLHYLRPETAQGIFVNFQN 217

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +                    
Sbjct: 218 VLTSARKKPPFGIVQTGKSFRNEITPGNFIFRTREFEQMEM------------------- 258

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                        EF V   T E      + ++D          
Sbjct: 259 -----------------------------EFFVEPGTDEE---WHQYWIDERTNWYTDLG 286

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLP 297
            +  +L             +    + +       +      GI     F  GT  K+S  
Sbjct: 287 INADNLRHYEHPKEKLSHYSKRTVDIEYKFGFAGSDWGELEGIANRTDFDLGTHTKHSGK 346

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
             + F  A  K +   +     G  R + A +  ++                 +     +
Sbjct: 347 DLSYFDQAQNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 406

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP K +++ +  +          + A+L +   +V +DD    IG ++   D +G P  V
Sbjct: 407 APVKAAVLPLSRNSD-LSPKARDLAAQLRQWW-NVDFDDAQA-IGKRYRRQDEIGTPFCV 463

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D+ V ++ R T  +E ++L++V +Y + R 
Sbjct: 464 TVDFDTLDDNAVTVRDRDTMSQERIALDKVEDYLAERL 501


>gi|262305743|gb|ACY45464.1| glu- + pro-tRNA synthetase [Harbansus paucichelatus]
          Length = 134

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           + RGI+ G   + G  +S      +   +  +  YV   S+G+ + R +  +I    D +
Sbjct: 15  TGRGIQAGTSHHLGQNFSKMFDIVYDDPETSEKTYVYQNSWGL-STRSIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++             +     C++   RL K    V  D     + 
Sbjct: 74  GLVLPPRVAQVQVVIVPCGLTANMKEEEKETLVIKCKEYEERLRKCDVRVHGDYRDNYRP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|116621601|ref|YP_823757.1| seryl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122254610|sp|Q024V4|SYS_SOLUE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116224763|gb|ABJ83472.1| seryl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 424

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +   G +    +     +    + G  E+  P + ++     +G+   + +++ ++   
Sbjct: 164 LYWGAGARLERALVNFFLDVHTQQHGYTEVLPPFMVNSASLYGTGQLPKFAEDLFKI--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+I+R        LP         FR E     R   G++R  +F
Sbjct: 221 ENSDFWLIPTAEVPVTNIYRDETLEGEQLPVKLCAYTPCFRSEAGSYGRDVRGIIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +   F   PE S    +K+      I  RLGL    +   +G +G
Sbjct: 281 QKVELVKF-TRPEQSYDELDKLTADAEDILVRLGLPFRTVVLCTGDMG 327


>gi|256838464|ref|ZP_05543974.1| glycyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256739383|gb|EEU52707.1| glycyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 514

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 122/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +M   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 DMGSTADGATKIYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K   + L+    LGL     R           H+  
Sbjct: 261 MREFEQMEMQFF-VRPGEEIEWFKKWKSTRLKWHQALGLGDEKYR----------YHDHE 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I  +    +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAATDIEFEMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  RV  +++  
Sbjct: 345 QH------------------EKFSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSIMAG 386

Query: 332 SHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +  E+I   L +      +D
Sbjct: 387 SYCEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIINML-RFDFRCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  + + 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVSIDKLHDIITEKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|256396139|ref|YP_003117703.1| glycyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256362365|gb|ACU75862.1| glycyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 460

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 142/453 (31%), Gaps = 78/453 (17%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           Y + PLG +  +N+     +         + +    + + ++W  SG    +      L 
Sbjct: 33  YDYGPLGVELKENIKRQWWKAMVTGREDVVGLDSSVILAREVWEASGHVKEFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT-FYQIQLKFRD------ELRPRFGVM 150
           +       +   H      +  ++   +  +P      I            E +    ++
Sbjct: 90  ECQSCHKRFREDH------LIEAYEAKHNRVPERGLADINCPNCGNKGTFTEPKVFNLML 143

Query: 151 RSR-EFLMKDAYSFDLTPEGSK---HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           ++     M DA    L PE ++    SY  +  +  +                G IG   
Sbjct: 144 QTHLGVTMDDAGLAYLRPETAQGIFVSYKTVRDASRK----------KPPFGIGQIGKSF 193

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E         T+ F   +   F  P E+  + +                  +    E 
Sbjct: 194 RNEITPGNFIFRTREFEQMEMEFFVKPGEDEQWFEYWLNERYNWWTDLGLKPENLRFFEH 253

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD------- 306
                 +    S R +++ + F FG             T + L   A   G D       
Sbjct: 254 ---PAEKLSHYSKRTVDIEYRFNFGGQEFSELEGVANRTDFDLSTHAKHSGEDFTQLEQE 310

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLI 352
            G+     +     G  R + A +  ++                 +     +AP K +++
Sbjct: 311 TGERWTPFVVEPAAGVNRGMLAFLLDAYAEDEAPNAKGQMEVRKVLRLDKRLAPVKAAVL 370

Query: 353 NIKAH---DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  +       RD       +L +   +V +DD G  IG ++   D +G P  + V   
Sbjct: 371 PLSRNVDLSPKARDLA-----QLLRKNWNVEFDDAGA-IGRRYRRQDEIGTPFCITVDFD 424

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + D  V ++ R +  ++ ++L++V  Y + R 
Sbjct: 425 TLDDQAVTVRERDSMEQQRVALDQVEGYLAARL 457


>gi|15220974|ref|NP_173251.1| tRNA synthetase-related / tRNA ligase-related [Arabidopsis
           thaliana]
 gi|332191556|gb|AEE29677.1| class II aaRS and biotin synthetase domain-containing protein
           [Arabidopsis thaliana]
          Length = 165

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F+   ++ L  SA  +     +  V +    + ++  + A++   + GK   W   ++P 
Sbjct: 19  FHLRDRFKLEYSA--ENETMIERSVLIHRAVLSSVERLFAILLEQYKGKFPFW---LSPR 73

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  + ++    +  R   +K+  ++ + G  V  D     +  +   A +  +   ++VG
Sbjct: 74  QAIVCSV---SEDYRSYADKVRDQIHEAGYYVDVDTTDRNVSDKVQEAQVAHYNYILVVG 130

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     +V +  R     E MS+E + +    + +N
Sbjct: 131 DEEARTGQVTVWLRD----EMMSIETLSDEFKLKTAN 163


>gi|253996240|ref|YP_003048304.1| histidyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253982919|gb|ACT47777.1| histidyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 422

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 134/436 (30%), Gaps = 50/436 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG Y  LP        +    R   ++ G   + +P ++S DL+V S     D   
Sbjct: 5   FQSIKGFYDILPEATPLWFKLEDTARRVLSQYGYKNIRMPLVESTDLFVRSVGEHTDIVE 64

Query: 91  KEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM    D  N   +   P            +  +Y N P   +     FR E       
Sbjct: 65  KEMYAWEDALNGDKLTLRPEGTAGCVRAVVENNLTY-NGPVRLWYSGAMFRHE---NVQK 120

Query: 150 MRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            R R+F      +F   TPE          V   R++  LG+  + ++  S  IG   +H
Sbjct: 121 GRQRQFHQIGVEAFGFNTPEVDAEQ----IVLLARLWRELGIADVELQINS--IGD--AH 172

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E    A+     +   +   D                    +         +        
Sbjct: 173 E---RAEYRNVLIAYFEQHADLLDEDAKRRLHTNPLRILDTKNPRMQAMCEAAPKLLDCL 229

Query: 269 DSLP--ENKRVSARGIEVGHIFYFGTK-------YSLPMSATFKGADGKDHYVQMGSYGI 319
            +      + +  R  + G  +    +       Y+  +        G    +  G    
Sbjct: 230 GAETRAHFEGLCKRLNDAGVAYTINPRLVRGLDYYNRTVFEWVTTKLGAQGTIAGGGRYD 289

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSV-------------APFKISLINIKAHDQVCRDACE 366
             +  +    +++      I  + V             AP  + L+N+    +    A  
Sbjct: 290 SLVERLGG--DATPACGFGIGLERVFLLMQEYQVVADDAP-DVYLVNVG---EQAEAAAF 343

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---T 423
            I  RL      V     G    SQ   AD       VI+G   V++++V +K  L    
Sbjct: 344 GIAERLRNANIQVILHAGGGSFKSQMKKADRSRAKYAVILGDDEVANNEVALKPLLATVK 403

Query: 424 GIREDMSLEEVINYAS 439
           G ++ +S+E  + Y +
Sbjct: 404 GEQQKLSVEAAVTYLT 419


>gi|108803618|ref|YP_643555.1| glycyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|108764861|gb|ABG03743.1| glycyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 466

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 75/462 (16%), Positives = 149/462 (32%), Gaps = 59/462 (12%)

Query: 28  RTGMIHQHSK---GI---YSWLPLGQKALDNV-NAIIREE-QNRTGAIEMSVPTLQSADL 79
           R G ++Q S+   GI   Y + PLG +   N+     R     R   + +    +    +
Sbjct: 16  RRGFVYQSSEIYGGIRSSYDYGPLGVEMKRNIREEWWRSMVYMRDDVVGIDAAVIMHPKV 75

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  +++   ML  +  + +        EE       +   S   +     Q   + 
Sbjct: 76  WEASGHVETFND-MLVESRTSGRRYRADHLIEEATG--IDAEGMSPEEM-TRLIQEDERI 131

Query: 140 RDELRPRFGVMRSREFLMKDAYSFD--LTPEGSK----HSYNKMFVSYLRIFHRLGLKSI 193
           +D +         R F +          +PE        +   +FV++  +        +
Sbjct: 132 KDPVDGGRDFAPVRPFNLMFETYTGPVKSPENLAYLRPETAQGIFVNFKNVLQT---SRV 188

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +      IG    +E         T+ F   +   F  P  + ++ +            
Sbjct: 189 KVPFGIAQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHEYWIEERREWYTR 248

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-----------TKYSLPMSATF 302
                 +    E   +   +    S R +++ + F F            T Y L   + +
Sbjct: 249 LGIRPENLRLYEHPKE---KLSHYSKRTVDIEYNFPFAGWSELEGIANRTDYDLRRHSEY 305

Query: 303 KGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWP 341
            G           + +   +     G  R++ A++  ++  +              +   
Sbjct: 306 SGEKLEYFDQAKNRSYIPYVIEPAAGVDRILLALLVDAYHEEEAPNAKGELERRTVLKLH 365

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             VAP K ++  +    +       ++Y  L      +F+DD G  IG ++   D  G P
Sbjct: 366 PRVAPTKAAVFPLTKK-EPVSAVARRLYDDLKG-DYRLFYDDSG-SIGRRYRRQDEAGTP 422

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V V    + D KV I+ R T  +E + +E V +  +   S
Sbjct: 423 FCVTVDFDTLEDKKVTIRDRDTMEQERIPIEAVRDRLAKLIS 464


>gi|262305723|gb|ACY45454.1| glu- + pro-tRNA synthetase [Daphnia magna]
          Length = 134

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S       +  + K+  ++   S+GI   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVVEDPETKEKKHIYQNSWGIT-TRTIGVMVMVHSDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P +VA  ++ ++         +        AC +    LS  G  V  D       
Sbjct: 74  GLVLPPNVASVQVVIVPCGINVNVTEDEKSNLMAACMEYEKVLSAAGIRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|160885408|ref|ZP_02066411.1| hypothetical protein BACOVA_03408 [Bacteroides ovatus ATCC 8483]
 gi|237715422|ref|ZP_04545903.1| glycyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262405264|ref|ZP_06081814.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|293370597|ref|ZP_06617149.1| glycine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|294644763|ref|ZP_06722508.1| glycine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294810581|ref|ZP_06769233.1| glycine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|298481641|ref|ZP_06999832.1| glycine--tRNA ligase [Bacteroides sp. D22]
 gi|299147277|ref|ZP_07040342.1| glycine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|156109030|gb|EDO10775.1| hypothetical protein BACOVA_03408 [Bacteroides ovatus ATCC 8483]
 gi|229444731|gb|EEO50522.1| glycyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262356139|gb|EEZ05229.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292634331|gb|EFF52868.1| glycine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|292639885|gb|EFF58158.1| glycine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294442242|gb|EFG11057.1| glycine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086409|emb|CBK67932.1| glycyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
 gi|298272182|gb|EFI13752.1| glycine--tRNA ligase [Bacteroides sp. D22]
 gi|298514555|gb|EFI38439.1| glycine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 513

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 118/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M              +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 197 MFSTEMGSTSEGAMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      + K     L+    LG              GD S
Sbjct: 257 FIFRMREFEQMEMQFF-VKPGTELDWFKKWKEIRLKWHKALGF-------------GDAS 302

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           + +                         +       +   I       +     +H+   
Sbjct: 303 YRYH----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTN 340

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                       K+S      F     + +   +    IG  R+  +
Sbjct: 341 FDLSQH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLS 382

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++ +S+  + +           P ++AP K++++ +   D    +   ++   L K    
Sbjct: 383 IMSASYCEEQLENGESRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREVIDSL-KFHFH 440

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  
Sbjct: 441 CQYDE-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNII 499

Query: 439 SHRFS 443
           + R S
Sbjct: 500 ADRVS 504


>gi|28897383|ref|NP_796988.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838540|ref|ZP_01991207.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260363552|ref|ZP_05776381.1| histidine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260876342|ref|ZP_05888697.1| histidine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260898613|ref|ZP_05907109.1| histidine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|260899287|ref|ZP_05907682.1| histidine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|31077001|sp|Q87S15|SYH_VIBPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|28805595|dbj|BAC58872.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748055|gb|EDM58914.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308086928|gb|EFO36623.1| histidine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308093021|gb|EFO42716.1| histidine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308106609|gb|EFO44149.1| histidine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|308113026|gb|EFO50566.1| histidine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|328472595|gb|EGF43458.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 422

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 141/429 (32%), Gaps = 32/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRSCIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGID-KHVRLELNSIGSQEDRADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     + ++    +    
Sbjct: 178 RTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDIQAILGDAPRLSEYLGEESKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYG 318
               +L D+      V+ R +  G  +Y  T +   +  + A      G  +   +   G
Sbjct: 238 AGLCELLDAAGIEYTVNERLV-RGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLG 296

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV 375
                 V   +      + ++  +++    +     + +    +    A  K+  +L + 
Sbjct: 297 GKPTPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQLREA 353

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V     G     QF  AD +G  + +++G   V+D+ V +K  + G +E  +  E
Sbjct: 354 ISGVRVMNHFGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVGGEQETYNQAE 413

Query: 434 VINYASHRF 442
           V    +   
Sbjct: 414 VAEKIAALI 422


>gi|329297581|ref|ZP_08254917.1| histidyl-tRNA synthetase [Plautia stali symbiont]
          Length = 424

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 142/446 (31%), Gaps = 63/446 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIEGTLKQVLASYGYSEIRLPIVEQTPLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQMGVEVFGLQGPDVDAE---LIMLTHRWWKALGIAD-HVELELNSIGSLDARANY 177

Query: 212 VLA-----DTGETQVFCSKDFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     +  E  +        +  P     S+N D   +++    + ++    +    
Sbjct: 178 RSALVAFLEQHEEVLDEDCKRRMYTNPLRVLDSKNPDIQTLLNDGPTLGEFLDEESREHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP---------------MSATFKGAD 306
                L D      R++ R +  G  +Y  T +                    +  +   
Sbjct: 238 SGLCALLDDAGIKYRINQRLV-RGLDYYNRTVFEWVTSSLGSQGTVCGGGRYDSLVEQLG 296

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+        + +G  R+V  V   +             P +I  + + A  Q  + A  
Sbjct: 297 GRATPAV--GFAMGLERLVLLVQAVN---------PEFEPTRIVDVYVIASGQGVQSAAM 345

Query: 367 KIYARLSKVGCDVFWDDMGEQI-------GSQ--FAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++  +L          D   ++         +  FA AD  G  + +++G   V   +V 
Sbjct: 346 QLAEKLRDA-------DPALKLMTNFGGGNFKKQFARADKWGARIALVLGEDEVKAGQVV 398

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           IK   TG ++ ++  +          
Sbjct: 399 IKDLRTGDQQTLAQSDAAATLHTLLQ 424


>gi|331703464|ref|YP_004400151.1| glycyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328802019|emb|CBW54173.1| Glycyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 456

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 120/365 (32%), Gaps = 70/365 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +      + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTNQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P   K  +                K I +   +  I  +L 
Sbjct: 208 FIFRTREFEQMELEFF-FDPSDQKDWFKYWLDQIELFLT----KKICLDKSNYKIRENLK 262

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A                 + + + +F+       +               N   
Sbjct: 263 DELAHYA-----------------LKTSDIEFNFPFGWGELWGISHRSDFDLKVHQNLSK 305

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D     +                                +     +    +G  R++ A
Sbjct: 306 EDLTVLKE-----------------------------ETNQKVLANVIEPSVGVERLMLA 336

Query: 328 V---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +         +E ++    +  P ++AP+++++  +            +++  L     D
Sbjct: 337 IFWQAYTEEQLEENNSRTVLKLPYNLAPYQVAITPLSKQ---LNQNANQLFLDLLN-DFD 392

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + + ++ ++ 
Sbjct: 393 AVYDETGN-IGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILISQLKDFL 451

Query: 439 SHRFS 443
           + +F+
Sbjct: 452 NSQFN 456


>gi|327440917|dbj|BAK17282.1| glycyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 462

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 122/366 (33%), Gaps = 73/366 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  +  PF   QI   FR+E+ P  
Sbjct: 154 MFKTHQGVTESSSNEIYLRPETAQGIFVNFKNVQRSMRKKTPFGIAQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E  +      + SY + F +  L ++ M+ +S        
Sbjct: 214 FTFRTREFEQMELEFFCKPGEDLE------WHSYWKEFCKNWLLALGMKEDS---MRLRD 264

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE   L+                        + +  +       +            +  
Sbjct: 265 HEDDELS-----------------------HYSNATTDIEFRFPFGWGELWGIADRTDYD 301

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVA 326
                             H+ + G  +      T+      + +        +GA RV  
Sbjct: 302 LK---------------QHMEHSGEDF------TYIDPVSNERYVPYCIEPSLGADRVTL 340

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  +++ + +          +  ++APFK +++ +        +    ++A L K   
Sbjct: 341 AFLCDAYEEEQLEGDDTRTVLRFHPALAPFKAAVLPLSKK---LSEEAGDVWADLRKA-F 396

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V +D+  + IG ++   D +G P  +        D +V ++HR +  +  M + EV  Y
Sbjct: 397 PVDYDES-QSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHRDSMEQIRMPIAEVKAY 455

Query: 438 ASHRFS 443
                 
Sbjct: 456 IEKHLQ 461


>gi|325297897|ref|YP_004257814.1| seryl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324317450|gb|ADY35341.1| seryl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 424

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 118/349 (33%), Gaps = 75/349 (21%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E   
Sbjct: 133 METELPKDA-LPHWELAKKYNLIDFDLGVKITGAGFPVYRGQGARLQRALINFFLDEARA 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PT+ +A     +G+      +M      N   +   PT E  +T+I+R  I 
Sbjct: 192 AGYEEIMPPTVVNAASGYGTGQLPDKEGQMY---HCNLDDLYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D TPE S+ S+ +M  
Sbjct: 249 DEKQLPIKNCAYTECFRREAGSYGKDVRGLNRLHEFSKVELVRID-TPEHSRQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S              F +    DF + SE    
Sbjct: 308 HVEGLLKKLELPYRILRLC----GGDIS--------------FTAAICYDFEVYSEAQKR 349

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                                     +EV  +  F T  +  + 
Sbjct: 350 W-----------------------------------------LEVSSVSNFDTYQANRLK 368

Query: 300 ATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
             ++ A+ K      +    +   R+VAA++E++   +GI  P ++ P+
Sbjct: 369 CRYRTANKKTELCHTLNGSALALPRIVAALLENNQTPEGIRIPKALIPY 417


>gi|307596038|ref|YP_003902355.1| glycyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307551239|gb|ADN51304.1| glycyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 591

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRD 363
           +           G  R+V   +E ++        +  P  +AP K  ++ I    +    
Sbjct: 434 ERFIPHDVEPSFGVDRIVYVTLEHAYTEVNGKPLLRLPPDIAPIKAVVLPIIKKQEYVS- 492

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I+  LS  G    +DD    IGS++A  D +G P  + +  K  +D+ V I+ R T
Sbjct: 493 IGKRIFKELSLAGIRAVYDD-DGTIGSRYAKYDSIGVPFAITIDDKTPADNTVTIRDRDT 551

Query: 424 GIREDMSLEEVINYASHRFSNNRPV 448
             +  +++ EVI   +        +
Sbjct: 552 KAQVRVNISEVIRIINDAVLRRLSI 576



 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 17/181 (9%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    QI    R+E+ PR G++R REF   +   F   PE +K  Y       LRI 
Sbjct: 189 RKLPLGIAQIGKVGRNEISPRQGLIRLREFTQMEIEFF-FDPENAKCPYLDELDVKLRI- 246

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +    + A     G     EF    +  E  V  ++    F      T + + + +
Sbjct: 247 ----IPERDVAA-----GVKEPREFR-PKEAVENGVVPNEWMAFFM--GLATIYMNELGV 294

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               + + A        ++   FD +  ++R     +  GH +   T Y L   A + G 
Sbjct: 295 PLDHQYFLAKLPEERAHYSAASFDQMVYSERFGWVEV-SGHAYR--TDYDLSRHAKYSGY 351

Query: 306 D 306
           D
Sbjct: 352 D 352



 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 14/81 (17%)

Query: 24 KLMLRTGMIHQ---------HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMS 70
          +LM   G  +             G Y + PLG +   N+    R             E+ 
Sbjct: 8  ELMSEGGFFYPSFEIYRGKAEVGGFYDYGPLGVELKRNIIEKWRRVFIYP-YQDFIVEVE 66

Query: 71 VPTLQSADLWVESGRYDSYGK 91
           P +    ++  SG  + +  
Sbjct: 67 TPIIMPKIVFEASGHLEHFTD 87


>gi|166077824|gb|ABY81006.1| glutamyl-prolyl tRNA synthetase [Paramysis bacescoi]
          Length = 145

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTAPDKKQYVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   +       A E++   L +       D      
Sbjct: 81  KGLVLPPRVASIHCIIMPVGITAKTTDEEKLALIKAAEQLQKELVEGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|189462867|ref|ZP_03011652.1| hypothetical protein BACCOP_03567 [Bacteroides coprocola DSM 17136]
 gi|189430483|gb|EDU99467.1| hypothetical protein BACCOP_03567 [Bacteroides coprocola DSM 17136]
          Length = 514

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 121/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 202 EMGSTADGAMKVYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFR 261

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K   + L+    LG      R           H+  
Sbjct: 262 MREFEQMEMQFF-VKPGTELEWFQKWKETRLKWHKALGFGDDHYR----------YHDHE 310

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I       +     +H+   FD  
Sbjct: 311 KLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 345

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                KYS      F     + +   +    IG  R+  +++ +
Sbjct: 346 QH------------------EKYSGKSIKYFDPEINESYTPYVIETSIGVDRMFLSIMSA 387

Query: 332 SHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++  +          +  P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 388 AYHEETLENGETRVVLKLPAALAPVKLAIMPLVKKD-GLPEKAREIMDDL-KFHFHCQYD 445

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  + +  + + D+ V +++R T  +E +++ ++ +  + + 
Sbjct: 446 E-KDSIGKRYRRQDAIGTPYCITIDHQTLEDNCVTLRNRDTMEQERVAIADLNSIIADKV 504

Query: 443 S 443
           S
Sbjct: 505 S 505


>gi|317498118|ref|ZP_07956420.1| histidyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894595|gb|EFV16775.1| histidyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 414

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 64/436 (14%), Positives = 132/436 (30%), Gaps = 49/436 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI Q  +G   W          +  I ++        E+  P  +  +L+        D 
Sbjct: 1   MITQAPRGTKDWFGKDMDQRTYLENIFKDLCASYNIHEIITPVFEHTELFQRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         +  +  +    P   + I   FR E +P+ G
Sbjct: 61  VQKEMYTFEDKGHRSISLKPEGTAGAIRAYLQNGLANEPQPIKMFYITPAFRYE-KPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+               ++     +  ++++   ++GLK   +   S  IG +   
Sbjct: 120 --RLRQHHQFGVEFVGAESPLAEVELITLVSTFIK---KIGLKDAKLHINS--IGCE--- 169

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 +  +  +   K+  +   P+     +         +                  
Sbjct: 170 --NCRKEYNKALLAYLKEHEEHLCPTCRERMEKNPLRVIDCKVPECKEIVKDAPRTIDYL 227

Query: 269 DSLPENKRVSARGI--------EVGHIFYFGTKYSLPMSATFKGADG------------- 307
           D   +      + +        EV      G  Y       F   DG             
Sbjct: 228 DDECKAHFEELKSLLDALNIPYEVDTEIVRGLDYYTKTVFEFVNEDGFTLCGGGRYDNLV 287

Query: 308 ----KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                   +    +G+G  R++  + E   D      P +     I L  +    Q  + 
Sbjct: 288 HEIDGKVSMPSVGFGMGVERILYFLEEEKVD-----LPCT---RDIDLY-VGILGQEAKA 338

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L   G  V  D +G  + +Q   A+ L     +I+G   ++ ++  +K+  T
Sbjct: 339 KAYQIVVDLRDQGFVVETDYLGRSVKAQMKYANKLNAKNTIIIGDDELAKNEGNVKNMET 398

Query: 424 GIREDMSLEEVINYAS 439
                +SL+++ +   
Sbjct: 399 REVTTISLDKIADCLK 414


>gi|157813054|gb|ABV81272.1| putative bifunctional aminoacyl-tRNA synthetase [Forficula
           auricularia]
          Length = 134

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S     TF+  +  K+ YV   S+G+   RV+  +I    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSRMFEITFEDPETQKEQYVYQNSWGLT-TRVIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ +I         +       D C ++   L  +G  V  D       
Sbjct: 74  GLVLPPKVASKQVVIIPCGISVNLSQPARDALFDTCRRLEQNLIDLGIRVKCDLRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|86609248|ref|YP_478010.1| seryl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501982|sp|Q2JKN4|SYS_SYNJB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|86557790|gb|ABD02747.1| seryl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 435

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + A++ E     G  E+  P L ++     +G+   + ++  R AD +   + 
Sbjct: 174 GAALERALIAMMLERHIAAGYTEVIPPFLVNSAALQGTGQLPKFAEDSFRCADDD---LW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  +    +LP  F      FR E     R   G++R  +F   +  
Sbjct: 231 LIPTAEVPLTNLYRDEMIPAESLPLYFCAYTPCFRREAGSYGRDTKGLIRLHQFQKVELV 290

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S+  + K+      I   L L    +   SG +G   +     E    +   
Sbjct: 291 KV-TRPDQSEAEHEKLVQDAEAILQMLELPYRVVELCSGDLGFAAARCFDLEVWFPSQNQ 349

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     N  + +
Sbjct: 350 YREISSCSNCWDFQARRANLRYKE 373


>gi|307326771|ref|ZP_07605963.1| histidyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887534|gb|EFN18528.1| histidyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 420

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 139/434 (32%), Gaps = 40/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  +G Y  +P    A   V   I     R+G   +  P  ++ +L+        D   
Sbjct: 4   FKAPRGTYDLIPPASAAYLAVREAIAAPLKRSGYGYIETPGFENVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRDELRPRFG 148
           KEM  L  +    +   P                ++   LP   +     +R E RP+ G
Sbjct: 64  KEMYTLTTKGGDELALRPEG-TASVLRAALEANLHKAGSLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +     +  LGL+   +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILAHDAYRSLGLRDFRILLNSLGDATCRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E      +      +  +     + ++   ++  +          
Sbjct: 177 YRAALQDFLRGLDLDEDTRARVEINPLRVLDDKREAVREQLTGAPLLRDYLCEECKAYHA 236

Query: 263 HNEKLFDSLPENKRV---SARGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKD 309
              +L  +            RG++      F       G++ ++     + G     G  
Sbjct: 237 EVRELITARGVAFEDDAKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G + +G  R V A+     +G  +  PD+V+ F + L       +  R     + 
Sbjct: 297 ALPSVG-WALGVDRTVLAL---EAEGIELNLPDAVSVFAVPL------GEEARKVLFGVV 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G    +   G+ + +    A+  G    ++ G + +++  V++K   +G +  +
Sbjct: 347 GELRTAGVATDFAYGGKGLKAAMKAANRSGARYAIVAGERDLAEDVVQLKDMESGEQAPV 406

Query: 430 SLEEVINYASHRFS 443
            L EV+     R +
Sbjct: 407 PLAEVVEAIQSRLA 420


>gi|317049135|ref|YP_004116783.1| histidyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316950752|gb|ADU70227.1| histidyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 424

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 71/448 (15%), Positives = 131/448 (29%), Gaps = 67/448 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIEGTLKQVLASYGYSEIRLPIVEQTPLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +  E   IG        
Sbjct: 122 YRQFHQMGAEVFGLQGPDVDAELIMM---TARWWKALGIAD-HVELELNSIGS-----LE 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS- 270
             A+  +  V   +   D                    +                  D  
Sbjct: 173 ARANYRDALVAFLEQHKDVLDEDCKRRMYTNPLRVLDSKNPDVQQLLNDAPTLGDFLDED 232

Query: 271 -----------------LPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
                                 +   RG++     +F       G++ ++     + G  
Sbjct: 233 SRAHFSGLCALLDDAGIQYRINQRLVRGLDYYNRTVFEWVTSALGSQGTVCGGGRYDGLV 292

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                       + +G  R+V  V   +             P +I  + + A  Q  + A
Sbjct: 293 EQLGGRPTPAVGFAMGMERLVLLVQAVN---------PEFEPTRIVDVYVIASGQGVQSA 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQI-------GSQ--FAVADLLGFPLQVIVGSKFVSDSK 415
             ++  +L          D   ++         +  FA AD  G  + +++G   V+  +
Sbjct: 344 AMQLAEKLRDA-------DPQLKLMTNFGGGNFKKQFARADKWGARIALVLGEDEVATGQ 396

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V IK   TG ++ ++  E          
Sbjct: 397 VVIKDLRTGDQQTLAQSEAAATLRTLLQ 424


>gi|258545520|ref|ZP_05705754.1| histidine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258519220|gb|EEV88079.1| histidine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 423

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 135/431 (31%), Gaps = 44/431 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+    P     L  ++ +I     R     + +P L+   L+  +     D   KEM  
Sbjct: 11  GMNDVFPPEASHLQQLHDLIHAVLARYAYRPLQLPLLEQTGLFKRAVGEETDVVSKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRND+++   P     +      H K     P   Y     FR E RP+ G  RSR+F
Sbjct: 71  FCDRNDESITLRPEATAGVVRAMIQHGK--LQQPQRVYAEGPMFRYE-RPQKG--RSRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-GDLSHEFI--- 211
                 +F +           +      +F RLG+  + +  E   IG  +  H F    
Sbjct: 126 SQVSVEAFGMAGAALDAELIAICA---DLFRRLGVLDL-LTLELNTIGLAEERHAFQQAL 181

Query: 212 ------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  L    +             + S+N     ++     ++ +    +        
Sbjct: 182 VAYLQNHLDALDDDSRRRLTINPLRILDSKNAGVQAVLDGAPALDDYLGAESRAHFARLT 241

Query: 266 KLFDSLPENKR---VSARGIE--VGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQ 313
            L D+     R      RG++     +F       G + ++     + G           
Sbjct: 242 ALLDAQGIAWRRNPRLVRGLDYYCHTVFEWTTDALGAQGTVTAGGRYDGLVEQLGGKPTP 301

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              +  G  R++  ++  + D      P +V           A D     +   +  RL 
Sbjct: 302 AAGFAFGIERIL--LLAQTRDTFRDT-PPAVYAI--------ATDDAHFASLLPLVQRLR 350

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                V      + + +Q   AD  G    +I+G    ++    +K+   G +E + L E
Sbjct: 351 DADIAVLVQTQVQALKNQLRKADQEGAHYALIIGDDEAANQSASLKNLRDGNQERLPLAE 410

Query: 434 VINYASHRFSN 444
              Y   R   
Sbjct: 411 TPAYLQERLKE 421


>gi|301066573|ref|YP_003788596.1| histidyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300438980|gb|ADK18746.1| Histidyl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 427

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 136/431 (31%), Gaps = 42/431 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V A+ R+   +    E+  P  ++ D++  S     D 
Sbjct: 1   MNYQRPKGTADILPGQSERWQQVEAVARKIFAQYQYHEIRTPIFENVDVFSRSAGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ M   P     +   +            P+  Y +   FR E RP+
Sbjct: 61  VTKEMYTFKDKGDRMMALRPEGTAGVVRAYVENKLYGPEHAKPYKVYYLGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESG--- 200
            G  R R+F      +F             +    L       LK +        +    
Sbjct: 120 SG--RQRQFHQIGVEAFGSDSPVLDAETLALAKQLLEALGAKHLKFVINSLGDPATRQAF 177

Query: 201 ---------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P    LS +  V       ++  SKD  D  I +      D ++  +    
Sbjct: 178 HAALVDYLTPFKDQLSEDSKVRLVKNPLRILDSKDKHDQEIVANAPSILDYLTPEAQQHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFY-FGTKYSLPM-SATFKG---A 305
                         ++  ++          I EV      FG  Y+  +    + G    
Sbjct: 238 DRVKTLLQGLGIPFEVDATMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEE 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R++  +              +  P    ++ I   DQ      
Sbjct: 298 LGGPETPGIG-FAMGVERLMLLMQGEL---------PTAQP-DAYIVTI---DQGADQEA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   + + G     D MG +   QF  A+     L + +G    +   V+IK+  TG 
Sbjct: 344 LQMLTAIRQQGFTGEMDYMGRKPKGQFKAANKANAKLVLTIGESERAAGTVQIKNMATGD 403

Query: 426 REDMSLEEVIN 436
           ++     +V+ 
Sbjct: 404 QQAFPQADVLA 414


>gi|257871364|ref|ZP_05651017.1| seryl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257805528|gb|EEV34350.1| seryl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 425

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + ++     G  EM  P + ++D    +G++  + +++ +LA
Sbjct: 163 FVYYKGLGARLERALYNFMLDQHVYEHGYTEMITPYIVNSDAMFGTGQFPKFKEDVFQLA 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           +     +   PT E  +T+ +   I     LP  F  +   FR E     R   G++R  
Sbjct: 223 ETG---LTLIPTAEVPLTNYYNGEILDLDQLPVYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +        E S     KM  +   I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKLS-EAEHSYEELEKMTANAEDILQKLQLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D       + 
Sbjct: 339 VWIPAQETYREISSCSNCEDFQARRAMIRYRDNDGKIHYMH 379


>gi|254293766|ref|YP_003059789.1| seryl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254042297|gb|ACT59092.1| seryl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 437

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 73/212 (34%), Gaps = 14/212 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    +   + + Q +  G  E+S P L   D  V +G+   + +++ +        
Sbjct: 178 KMAKLERALTQFMLDVQTDEHGYQEVSPPFLVRDDALVGTGQLPKFEEDLFKTT----ND 233

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I +   LP         FR E     R   G++R  +F   +
Sbjct: 234 FYTIPTAEVPVTNLVREQILAEDQLPIRMTAATPCFRSEAGSAGRDTKGMIRLHQFTKVE 293

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLAD 215
             S    PE S     +M      I  +L L    +   +G IG         E  + + 
Sbjct: 294 MVSI-TKPEESDAELERMTGCAEAILQKLELPYRVVNLCTGDIGFGAKRTYDIEVWLPSQ 352

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
               ++       DF     NT F    + ++
Sbjct: 353 DTYREISSCSTCGDFQARRMNTRFKPAPTEDN 384


>gi|166077762|gb|ABY80975.1| glutamyl-prolyl tRNA synthetase [Paramysis baeri]
 gi|166077772|gb|ABY80980.1| glutamyl-prolyl tRNA synthetase [Paramysis bakuensis]
 gi|166077774|gb|ABY80981.1| glutamyl-prolyl tRNA synthetase [Paramysis bakuensis]
          Length = 145

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTAPDKKQYVYQNSWGLT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTEDERLALIKAAEQLQKELVEGNVRAECDFRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|116750724|ref|YP_847411.1| histidyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116699788|gb|ABK18976.1| histidyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 421

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 127/431 (29%), Gaps = 47/431 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G+   LP   +    V    RE     G  E+  P L+  +L+        D   K
Sbjct: 5   QAIRGMNDILPGQIEWWQKVEKAAREVLEDFGYREIRTPVLEKLELFARGIGESTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR    +   P     +   +  H          FY +   FR E RP+ G  R
Sbjct: 65  EMYAFPDRKGDMLGLRPEATASVVRAYIQHNLQADPFTQKFYLMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F   DA +F +           M   +   F R+GL  + +      I     HE  
Sbjct: 122 YRQFHQIDAEAFGIDDPMLDAEVMYMLRLF---FERVGLSGVVLH-----INSLGCHECR 173

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +   +          P      + + +   +  VE+  A       + +    D  
Sbjct: 174 QEYRSVLKEYLGGHVERLCPDCLRRRETNPLRVFDCKVERCQAVLEDAPLLPDYICGDCG 233

Query: 272 PENKRVSARGIEVGHIFYF------GTKYSLPMSATFK----------GADGKDHYVQMG 315
               RV     ++   F        G  Y    +              G  G+ + +   
Sbjct: 234 EHFARVRDYLQQLQTDFVIDPRMVRGLDYYTRTTFEVITDRLGAQNAVGGGGRYNGLVRD 293

Query: 316 SYGIGA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
             G           M  +  +++   +      P          + I    +  R     
Sbjct: 294 LGGPDLPGIGFAIGMERLILLLQQEGEESK-RSPR---------LFIATLGEAARLKGFL 343

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +   +G     D     + SQ   AD  G    +I+G + ++  +++++      + 
Sbjct: 344 LAQQFRALGVSTETDYEARSLKSQMRRADRSGARYVLILGEEEIARGEIQLRDLREKSQV 403

Query: 428 DMSLEEVINYA 438
           ++ L       
Sbjct: 404 NLPLASASETV 414


>gi|108799252|ref|YP_639449.1| histidyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868368|ref|YP_938320.1| histidyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126434910|ref|YP_001070601.1| histidyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|108769671|gb|ABG08393.1| histidyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119694457|gb|ABL91530.1| histidyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126234710|gb|ABN98110.1| histidyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 418

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 133/432 (30%), Gaps = 42/432 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            Q  KG+  +LP        V   +     R G  ++ +P  +   L+        D   
Sbjct: 6   FQAPKGVPDYLPPESAQFVAVRDGLLSAARRAGYGDVELPIFEDTALFARGVGESTDVVS 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM   ADR D+++   P     +      H      LP         FR E RP+ G  
Sbjct: 66  KEMYTFADRGDRSVTLRPEGTAGVIRAVIQHRLDRGALPVKLCYAGPFFRYE-RPQAG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG 204
           R R+       +  +           +  +    F  LGL    +   S       P   
Sbjct: 123 RYRQLQQVGIEAIGVDDPALDAEVIAVADA---GFRSLGLDGFRLELTSLGDDTCRPQYR 179

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +L  +F+   D  E     ++      +  +     ++ +   ++    +  A       
Sbjct: 180 ELLQDFLFKLDLDEETRRRAEINPLRVLDDKRPHVREMTADAPVMLDHLSDSAKAHFEAV 239

Query: 265 EKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKGADGKD--HY 311
           +    +L     ++ R             E  H    G +  +     + G   +     
Sbjct: 240 QTHLQALGVPYVINPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRRLGGQD 298

Query: 312 VQMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           V    +G+G  R + A+  E    G        VA   +  I     D     A   + A
Sbjct: 299 VSGIGFGLGVDRTLLALRAEGKTAG-------QVARIDVYCIPSGP-DAKVDIAV--LAA 348

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G           + +    AD  G  + +I     V+   V++K   TG + +M+
Sbjct: 349 DLRRAGVRADVAYGDRSLKAALKAADRTGASIALIADP-GVA--TVKVKDLGTGDQIEMA 405

Query: 431 LEEVINYASHRF 442
            E V+     R 
Sbjct: 406 REAVVAEVVSRL 417


>gi|116495010|ref|YP_806744.1| histidyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|191638516|ref|YP_001987682.1| histidyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|122263573|sp|Q038S0|SYH_LACC3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558690|sp|B3WEM3|SYH_LACCB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116105160|gb|ABJ70302.1| histidyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|190712818|emb|CAQ66824.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Lactobacillus casei BL23]
 gi|327382552|gb|AEA54028.1| Histidyl-tRNA synthetase 2 [Lactobacillus casei LC2W]
 gi|327385749|gb|AEA57223.1| Histidyl-tRNA synthetase 2 [Lactobacillus casei BD-II]
          Length = 427

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 136/431 (31%), Gaps = 42/431 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V A+ R+   +    E+  P  ++ D++  S     D 
Sbjct: 1   MNYQRPKGTADILPGQSERWQQVEAVARKIFAQYQYHEIRTPIFENVDVFSRSAGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ M   P     +   +            P+  Y +   FR E RP+
Sbjct: 61  VTKEMYTFKDKGDRMMALRPEGTAGVVRAYVENKLYGPEHAKPYKVYYLGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESG--- 200
            G  R R+F      +F             +    L       LK +        +    
Sbjct: 120 SG--RQRQFHQIGVEAFGSDSPVLDAETLALAKQLLEALGAKHLKFVINSLGDPATRKAF 177

Query: 201 ---------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P    LS +  V       ++  SKD  D  I +      D ++  +    
Sbjct: 178 HAALVDYLTPFKDQLSEDSKVRLVKNPLRILDSKDKHDQEIVANAPSILDYLTPEAQQHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFY-FGTKYSLPM-SATFKG---A 305
                         ++  ++          I EV      FG  Y+  +    + G    
Sbjct: 238 DRVKTLLQGLGIPFEVDATMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEE 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R++  +              +  P    ++ I   DQ      
Sbjct: 298 LGGPETPGIG-FAMGVERLMLLMQGEL---------PTAQP-DAYIVTI---DQGADQEA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   + + G     D MG +   QF  A+     L + +G    +   V+IK+  TG 
Sbjct: 344 LQMLTAIRQQGFTGEMDYMGRKPKGQFKAANKANAKLVLTIGESERAAGTVQIKNMATGD 403

Query: 426 REDMSLEEVIN 436
           ++     +V+ 
Sbjct: 404 QQAFPQADVLA 414


>gi|217316871|gb|ACK37841.1| putative glutamyl-prolyl tRNA synthetase [Jasus edwardsii]
          Length = 134

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++     + G  +S      F+  + K   +    S+GI   R +  ++    D K
Sbjct: 15  SGRGVQGATSHHLGQNFSKMFEIIFEDPETKQKKFCYQNSWGIT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +               DAC K+ A L+  G     D   
Sbjct: 74  GLVLPPRVASVQAIIMPVGITAKSSEEDKANLTDACNKLVADLNAAGVRARCDLRD 129


>gi|196251172|ref|ZP_03149848.1| seryl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196209313|gb|EDY04096.1| seryl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 424

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + ++   L 
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYQEVLPPYLVNRASMIGTGQLPKFAEDAFHL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +++     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 222 --DNEDYFLIPTAEVPVTNLHRDEILTADDLPLYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+      I  RLGL    +   +G +G   +  + + 
Sbjct: 280 QFNKVELVKF-VKPEDSYDELEKLTHQAETILQRLGLPYRVVALCTGDLGFSAAKTYDIE 338


>gi|226944892|ref|YP_002799965.1| seryl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259511660|sp|C1DKY8|SYS_AZOVD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226719819|gb|ACO78990.1| seryl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 426

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E   P L  A     +G+   + +++ +++   +    
Sbjct: 170 ARLHRALAQFMLDLHTGEHGYEEAYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   R LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEILDARQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +  ++  +  ++  RL L    +   +G +G   +     E  V +   
Sbjct: 290 RI-VDPAKSYEALEELTANAEKVLQRLELPYRVLALCTGDMGFSATKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|39938569|ref|NP_950335.1| seryl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|67461791|sp|Q6YRD2|SYS_ONYPE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|39721678|dbj|BAD04168.1| seryl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 424

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 108/350 (30%), Gaps = 72/350 (20%)

Query: 8   LPILQENPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +      P+D    + KL +    R   I     G      LG +    +   + +  N+
Sbjct: 130 IRTFAFTPKDHVYLAEKLDILDFKRASKI--SGSGFVVCKGLGARLERALIQFMMDLHNK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +      +G+   +  E+ +L +  +      PT E    ++ R  I 
Sbjct: 188 KGYQEIIPPYIINEKSMFATGQLPKFEDEVYKLYNSKNN-WYLNPTAEVPTINLHREEIF 246

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               LP  +      FR E     +   G+ R  +F   +   F   P+ S    ++M  
Sbjct: 247 KPDTLPIKYVAYTTAFRQEAGSAGKDTRGIFRQHQFNKVELIQFCH-PQNSYECLDQMLK 305

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +   L L    +   +G +G         +A T + +VF         I S +   
Sbjct: 306 DSEEVLKLLKLPYRVVLLSTGDLGFS-------MAKTYDLEVFLPSYNCYREIGSISNSC 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D      +I  +                                                
Sbjct: 359 DFQARRANIKMKNP---------------------------------------------- 372

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
                A+ K+ YV +    G+   R V A++E+  +  G I  P+ + P+
Sbjct: 373 -----ANNKNEYVHILNGSGLAVGRTVIAILENYQNQDGTITVPEVLQPY 417


>gi|296084982|emb|CBI28397.3| unnamed protein product [Vitis vinifera]
          Length = 149

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L   +E  R D       L L + +  +   G+  W P G      +    ++    
Sbjct: 17  KAYLHFKEEAKRRDHRRLGIDLDLFS-IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIHIE 75

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            G   +  P +  ADLW  SG  D Y + M       D+     P + E+ 
Sbjct: 76  HGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNWEMH 126


>gi|239941025|ref|ZP_04692962.1| glycyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239987504|ref|ZP_04708168.1| glycyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291444465|ref|ZP_06583855.1| glycyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291347412|gb|EFE74316.1| glycyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 460

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 157/469 (33%), Gaps = 74/469 (15%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G ++  S      K  + + PLG +  +N+               + +    + +
Sbjct: 12  LSKRRGFVYPCSEIYGGQKAAWDYGPLGVEMKENLKRQWWRYMVTAREDVVGLDSSVILA 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            ++WV SG   ++   +      + +         +EE      +S +    +L      
Sbjct: 72  PEVWVASGHVATFSDPLTECTSCHKRYRADHLEEAYEEKHG---KSPVNGLADLNCPNCG 128

Query: 135 IQLKFRDELRPRFGVMRSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LK 191
            +  F  E +   G++ +             L PE ++            IF   G  L+
Sbjct: 129 NKGTF-TEPKQFSGLLSTHLGPTQDSGSVAYLRPETAQ-----------GIFTNFGQVLQ 176

Query: 192 SIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +   +   G   +G    +E         T+ F   +   F  P E+ ++         +
Sbjct: 177 TSRKKPPFGIAQMGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWQQYW-----M 231

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFG-------------TKY 294
           +Q    Y           +   P+ K    S R  ++ + F FG             T Y
Sbjct: 232 DQRWNWYTDLGMREENMRWYEHPKEKLSHYSKRTADIEYRFRFGGSEWGELEGVANRTDY 291

Query: 295 SLPM-------SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG--------- 337
            L            +   + ++ +   +     G  R + A +  ++             
Sbjct: 292 DLKAHSEASGTDLRYHDQEAQERWTPYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGVME 351

Query: 338 ----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               +     +AP K++++ +  + Q      + + A L K   ++ +DD G  IG ++ 
Sbjct: 352 KRTVMRLDPRLAPVKVAVLPLSRNAQ-LSPKAKGLAADLRK-NWNIEFDDAGA-IGRRYR 408

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             D +G P  V V    + D+ V ++ R T  +E +SL+++  Y   R 
Sbjct: 409 RQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVSLDQIQAYLGARL 457


>gi|330443906|ref|YP_004376892.1| seryl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807016|gb|AEB41189.1| seryl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 424

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 10/223 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   + ++Q   G      P L   ++   SG+   +  +  R
Sbjct: 159 GSGWPAYKNFGVLLEWALLTYLLQKQRAHGFELWLPPLLVKKEILYGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D  D  +   PT E V+       + + ++LP  +      FR E         G++R
Sbjct: 219 VED-GDHHLYLIPTAEVVLNGFHSQELLNEKDLPLYYAACTPCFRREAGAAGSQERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   + ++F  TP+    +Y KM      I   L L        +G +    S    
Sbjct: 278 VHQFHKVEMFAF-TTPDQEDSAYTKMLDIVEEILIELELPYRLSLLSTGDMSFTASKTID 336

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            E  +       +V       DF      T + D       V 
Sbjct: 337 AEVWLPGQNAFYEVSSISKCSDFQSRRSGTRYKDAQGKMHFVH 379


>gi|217316811|gb|ACK37811.1| putative glutamyl-prolyl tRNA synthetase [Cherax cuspidatus]
          Length = 134

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+G+   R +  +I    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCFQNSWGLT-TRTIGVMIMVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVCRD-----ACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++   I A            AC K+   L+  G     D   
Sbjct: 74  GLVLPPRVASVQAIIMPVGITAKSSEQDKLNLIVACNKLATDLNAAGVRARCDLRD 129


>gi|227534982|ref|ZP_03965031.1| histidyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187373|gb|EEI67440.1| histidyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 427

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 136/431 (31%), Gaps = 42/431 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V A+ R+   +    E+  P  ++ D++  S     D 
Sbjct: 1   MNYQRPKGTADILPGQSERWQQVEAVARKIFAQYQYHEIRTPIFENVDVFSRSAGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +            P+  Y +   FR E RP+
Sbjct: 61  VTKEMYTFKDKGDRMIALRPEGTAGVVRAYVENKLYGPEHAKPYKVYYLGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESG--- 200
            G  R R+F      +F             +    L       LK +        +    
Sbjct: 120 SG--RQRQFHQIGVEAFGSDSPVLDAETLALAKQLLEALSAKHLKFVINSLGDPATRKAF 177

Query: 201 ---------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P    LS +  V       ++  SKD  D  I +      D ++  +    
Sbjct: 178 HAALVDYLTPFKDQLSEDSKVRLVKNPLRILDSKDKHDQEIVANAPSILDYLTPEAQQHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFY-FGTKYSLPM-SATFKG---A 305
                         ++  ++          I EV      FG  Y+  +    + G    
Sbjct: 238 DRVKTLLQGLGIPFEVDATMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEE 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R++  +              +  P    ++ I   DQ      
Sbjct: 298 LGGPETPGIG-FAMGVERLMLLMQGEL---------PTAQP-DAYIVTI---DQGADQEA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   + + G     D MG +   QF  A+     L + +G    +   V+IK+  TG 
Sbjct: 344 LQMLTAIRQQGFTGEMDYMGRKPKGQFKAANKANAKLVLTIGESERAAGTVQIKNMATGD 403

Query: 426 REDMSLEEVIN 436
           ++     +V+ 
Sbjct: 404 QQAFPQADVLA 414


>gi|254468456|ref|ZP_05081862.1| seryl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087266|gb|EDZ64549.1| seryl-tRNA synthetase [beta proteobacterium KB13]
          Length = 425

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 10/221 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
                    +    +   + +      G  E   P L + D  + +G+   +G ++    
Sbjct: 161 FVFMKNDIARLHRAIGQFMIDTHTENHGYTEYYTPYLVNGDSLLGTGQLPKFGDDLFVTQ 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +D+++   PT E  +T+  R  I   ++LP         FR E     +   G++R  
Sbjct: 221 KNDDESLYLIPTSEVSLTNSVRDEIIDAKHLPIRMTAHTPCFRSEAGSYGKDTRGMIRQH 280

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +       PE S  +  +M      I   L L    M   SG +G   +     E
Sbjct: 281 QFDKVEMVQI-TKPELSYEALEEMLSHAENILKALDLPYRVMTLSSGDMGFGAAKTYDIE 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + +     ++    +  DF        F +    N++V 
Sbjct: 340 VWLPSQEQYREISSISNCEDFQARRLKARFKNQEGKNTLVH 380


>gi|225685037|gb|EEH23321.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 656

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 129/397 (32%), Gaps = 82/397 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-YNKMFVSYLRIFH 186
           +PF    I   FR+E+ PR G++R REFLM +   F     G KH  ++++    L    
Sbjct: 240 MPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHFVDPDGGKKHPRFHEVQDLELSFLD 299

Query: 187 RLGLKSIPMRAESGPIGGDLSHE----------------FIVLADTGETQVFCSKDF--- 227
           R    S   + E   IG  ++ +                F++     E+++   +     
Sbjct: 300 REVQLSGSTKVERMTIGKAVADKIVDNETLGYFLARIQLFLLKIGIDESKIRMRQHMQNE 359

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR-GIEVGH 286
           M                            A    VH  K    L   +  S    IE   
Sbjct: 360 MAHYAKDCWDAELFTTYGWIECVGCADRSAYDLTVHKNKTGAPLFVRETRSEPLRIEEWQ 419

Query: 287 IF----YFGTKYSL-------PMSATFKG----------ADGK----------------- 308
           I      FG ++          ++A  +            +GK                 
Sbjct: 420 IDLDKKKFGPRFRKDGKAVEAAVNALSQDLRAKLSLDLKENGKIEIDVDGVRSGKVELEK 479

Query: 309 ---------------DHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAP 346
                          ++   +     G  R++A ++E  +           + +P  VAP
Sbjct: 480 DIINIEKRTRVENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGVLSFPPIVAP 539

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            K+ L+ + +++   +    ++  +L ++G     DD    IG ++A  D LG P  + V
Sbjct: 540 TKVLLVPL-SNNPSFQPLVHRLTLKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITV 598

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + V D+   ++ R T  +   S EE+         
Sbjct: 599 DFQSVKDNTFTLRERDTTKQVRASEEEICKAVKSLVE 635



 Score = 40.7 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G     NV  + R+        +E+    L   D+   SG  D +   M
Sbjct: 38 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDCTMLTPHDVLKTSGHVDKFADWM 95


>gi|313139724|ref|ZP_07801917.1| glycyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132234|gb|EFR49851.1| glycyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 365

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 113/365 (30%), Gaps = 64/365 (17%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + D N    +   T + +  D       S    PF    +   FR+E+ P   + R+RE
Sbjct: 9   PVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTRE 68

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F +                                     G D   E+    
Sbjct: 69  FEQMEMEFFVVP------------------------------------GTD--EEWHQYW 90

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T+ +         +       + +   +         +        E    +   +
Sbjct: 91  IDTRTRWYTDLGINPENLRHYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANRTD 150

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             +S       H  + G   S      F  A G+     +     G  R + A +  ++D
Sbjct: 151 YDLS------AHSKHSGEDLS-----YFNQATGEKFVPYVIEPAAGLTRSLMAFLVDAYD 199

Query: 335 GKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                           +     +AP K +++ +    ++       + A L +    + +
Sbjct: 200 VDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-IAHDLAADLRQHEWMIDY 258

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++V +Y + R
Sbjct: 259 DEAGA-IGRRYRREDEIGTPLCITVDFDTIDDQAVTIRERDTMQQERVALDKVADYVAAR 317

Query: 442 FSNNR 446
            S  R
Sbjct: 318 VSEKR 322


>gi|145218843|ref|YP_001129552.1| glycyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|145205007|gb|ABP36050.1| glycyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 489

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/472 (15%), Positives = 148/472 (31%), Gaps = 66/472 (13%)

Query: 19  EIASHKLM---LRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAI 67
           +   HKL+    R G +   S         + + PLG +   N+  +            +
Sbjct: 17  DKVMHKLVSLAKRRGFVFPSSEIYGGLSACFDYGPLGSEMKKNIKDLWWRAMTRRHRNIV 76

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEE------------- 112
            +    + +  +W  SG   S+   M+  R   R  +A      H E             
Sbjct: 77  GLDASIMMNPTVWEASGHVSSFNDPMIDDRTTKRRYRADHLIENHIEKLRREGKEEQALA 136

Query: 113 --VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF---LMKDAYSFDLTP 167
                +   +     + L        +K  D     +     R+F      D  +   T 
Sbjct: 137 VQGAYEAAGTAPDPNKALYSLIIDEGIKAPDTGSGDWTD--VRQFNLMFQCDMGAVADTS 194

Query: 168 EGSK---HSYNKMFVSYLRIFHR------LGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   +   +FV++  +          G+  I     +  + G+     +V  +  E
Sbjct: 195 GTVYLRPETAQGIFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFIFR-MVEFEQME 253

Query: 219 TQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            Q F           +   + F+   S   I  +    Y      H   L   +      
Sbjct: 254 MQYFVKPGTQVEAFEAWREERFNWYTSSLGISPEKLHWYKHDKLAHYADLAYDIKFEFPF 313

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVI 329
               IE  H     T + L     F G +         + +   +     G  R+  A++
Sbjct: 314 GIEEIEGIHSR---TDFDLSQHQQFSGKNMEYVDQVTNERYTPYVVETSAGCDRLFLALL 370

Query: 330 ESSHDGK--------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             ++            +     VAP K +++ +    ++  +  EK+ A LS+    V +
Sbjct: 371 SDAYHEDVVDGEERVLLKLAPKVAPVKAAVLPLMKKGEMA-EVAEKLRAELSEQ-FLVQY 428

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           DD    IG ++   D +G P    V  + + D  + +++R T  +E +++ E
Sbjct: 429 DD-AASIGKRYRRQDEIGTPFCFTVDHQTIEDGTITVRYRDTAAQERINITE 479


>gi|94311043|ref|YP_584253.1| histidyl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|93354895|gb|ABF08984.1| histidyl tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 447

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 137/441 (31%), Gaps = 62/441 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      D   +  R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 16  KGMNDMLPTDAPLWDMFESAARSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMY 75

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFGVMR 151
              D  N + +   P   E      RS I+     + P   + I   FR E RP+ G  R
Sbjct: 76  SFTDSLNGENLTLRP---EGTAAAVRSTIEHNLLYDGPKRLWYIGPMFRHE-RPQRG--R 129

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGP 201
            R+F    A +              M     R++  LGL ++ +          RA    
Sbjct: 130 YRQFHQLGAEALGFAGPDVDAEIILMCQ---RLWDDLGLTNVRLELNSLGQAHERAAHRE 186

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F  + D    +   +         +         +   I        A    
Sbjct: 187 QLIKYLEGFQDILDEDSKRRLYTNPLRVLDTKNPALQEMAANAPKLIDFLGEESLAHFEG 246

Query: 262 VHNEKLFDSLPE-NKRVSARGIEVG--HIF-----YFGTKYSLP----MSATFKGADGKD 309
           V    L +++P        RG++     +F       G + ++          +   GK 
Sbjct: 247 VQRILLANNIPFKINPRLVRGLDYYNLTVFEWITDKLGAQGTIAGGGRYDPLIQQMGGKP 306

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R++  + E +      + PD+    +   + +    ++         
Sbjct: 307 APA--CGWAMGIERIIELIREEN------LVPDT----QGCDVYMVHQGELANQQAMIAA 354

Query: 370 ARLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
            RL   G DV      D  G+    +     AD  G    VI+G   ++   V++K    
Sbjct: 355 ERLRDAGLDVVLHATPD--GKSGSFKSQMKRADASGASFAVIIGDDEIAAGTVQVKQLRG 412

Query: 423 -----TGIREDMSLEEVINYA 438
                 G +  +  E+V+ + 
Sbjct: 413 GNVAEGGQQTTVPAEQVVEFI 433


>gi|257785136|ref|YP_003180353.1| seryl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257473643|gb|ACV51762.1| seryl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 427

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 80/231 (34%), Gaps = 19/231 (8%)

Query: 25  LMLRTGMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           L    GMI         G   +L  G  A     +   + +  N+ G  E   P + + D
Sbjct: 145 LGPELGMIDFDRGVKLAGTRFYLLGGMGARMERALINFMIDTHNQAGFKEWWPPVITNQD 204

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
               +G+   + +++  +       +   PT E  +T+I R  I     LP  +      
Sbjct: 205 SLYGTGQLPKFEEDLYHVQP----DLYLIPTAEVQLTNIHRDEILDASQLPLLYTAFTPC 260

Query: 139 FRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           FR+E     R   G++R  +F   +   F   PE S +    M     +I   LGL    
Sbjct: 261 FREEAGSAGRDTRGIIRVHQFDKVEMVKF-AKPEDSMNQLESMVQEAEKILQLLGLPYHV 319

Query: 195 MRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +   +G IG         E  + +     ++    +  DF     N  + D
Sbjct: 320 VTLCTGDIGFSACKCYDIEVWLPSYNAYKEISSCSNCWDFQARRANIRYKD 370


>gi|110004664|emb|CAK98999.1| putative histidyl-trna synthetase protein [Spiroplasma citri]
          Length = 418

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 134/410 (32%), Gaps = 37/410 (9%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  ++R    +    E+  P  ++ DL+V S     D   KEM  L D+ ++A +  P  
Sbjct: 23  LELMLRSLAMQYNYHEIRTPIFEAKDLFVRSVGAETDIVSKEMFELLDKKERAFVLRPEG 82

Query: 111 E-EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
              V+  I    +     LP   + +   FR E RP+ G  R R+F              
Sbjct: 83  TAPVIRSIIEDKLYGKYELPLKLFYLGNMFRYE-RPQHG--RLRQFNQFGVEVVGAKNYL 139

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                  + +    +   LGL ++ ++     +G   +    VL    + Q  C+   + 
Sbjct: 140 LDVE---VILLGYNLLKTLGLTNLTLKLNYLMVGEARTKYLGVLTAFFQDQTLCADCKIR 196

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             +        D    +         Y       NE+        K ++  GI       
Sbjct: 197 --LQKNPLRVLDCKIDHDKFGNAPKIYDYLIPTENEEFVA---IQKLLTKLGIPFSLDAQ 251

Query: 290 F--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGA--------MRVVAAV-----IESS 332
              G  Y   +      +  + +   +  G Y               V        +  +
Sbjct: 252 LVRGLDYYTGIVFEIVIEDQNRELTLLGGGCYDQLVHTFEPSLDYPAVGFALGLERLLLT 311

Query: 333 HDGKGIIWPDSVAPF-KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                I+  D   P+    LI +  H    R     +   L   G     D +   + +Q
Sbjct: 312 LATNDIVLADE--PYLDAYLICLSDH---ARHFAASLLLLLRASGFRADCDYLTRSVKAQ 366

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           F   + L     +I+G K +  + ++IK++ TG  +++  E++I   S  
Sbjct: 367 FKSLERLKAKNAIIIGDKELKKNVLKIKNQQTGKEQEVKFEKIIAVLSKE 416


>gi|294794000|ref|ZP_06759137.1| histidine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455570|gb|EFG23942.1| histidine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 423

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 136/443 (30%), Gaps = 51/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G   +LP        +   +RE     G  E+  P  +   L++       D 
Sbjct: 1   MAIRKPRGTQDFLPEQMIHWHYIEQRMREICKVYGFNEIRTPAFEETKLFLRGIGETTDV 60

Query: 89  YGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM      D    +    P +       +  +    +     +Y +   FR + +P+
Sbjct: 61  VQKEMYTFTTGDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHD-KPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
            G  R R+F    A                M V   ++    GLK + +   S       
Sbjct: 120 AG--RYRQFHQFGAEVLGSQSPVVDSEVICMVV---QLLKDFGLKDLNVEVNSVGCPTCR 174

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+  +    F    +  + Q+        +  P    D  +    +  V           
Sbjct: 175 PVYREKLIAFF---EPKKEQLCSDCQERLYKNPLRILDCKNETCKSLSVGAPEIHEHLCE 231

Query: 261 DVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT----------- 301
           + H+            +          RG++      F  +Y+ P+ A            
Sbjct: 232 ECHDHFEELKTYLSAANVQYTLNPRLVRGLDYYTKTAFEVQYT-PLGAQSAVAGGGRYDG 290

Query: 302 -FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG         + +G  R++ A+       K  + P+     + S+  +   D  
Sbjct: 291 LVEELDGPHTPAI--GFAMGMERLLLAL------EKQNLLPEPT--VEPSVFVVALGDAA 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KI   L      V  D  G+ + +Q   A+ +     +I+G   ++  +  I+ 
Sbjct: 341 KVE-AFKICQALHDEYITVEMDGQGKSMKAQLKYANKINAKYVIILGDDELARKEAIIRF 399

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             T  +E +SL+ V    +    
Sbjct: 400 MDTSEQETVSLDTVAERITSLVK 422


>gi|284054835|ref|ZP_06385045.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 102

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP  + L+ +           E +  +   +      D   +++G     A+    P+ 
Sbjct: 1   MAPVMVRLLPV---SDEFLPFVESVAEKWRSLDIRAEADHSHDRLGKMIRNAEKAKVPVM 57

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +VG+K V  + + I+ R  G    +++ E  +      +N
Sbjct: 58  AVVGAKEVESNSLSIRTRALGELGTLTVAETQSRLQFALAN 98


>gi|296139658|ref|YP_003646901.1| histidyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027792|gb|ADG78562.1| histidyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 441

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 136/433 (31%), Gaps = 50/433 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIR------EEQNRTGAIEMSVPTLQSADLWVES--G 84
            Q  KGI  ++P+     ++    +             G   + +P  +   L+      
Sbjct: 6   FQAPKGIPDYIPVPSGEKNSSADFLAVRTALLRAIADAGYGYIELPIFEDTSLFARGVGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D   KEM   ADR D+++   P     +      H      LP         FR E R
Sbjct: 66  STDVVAKEMYTFADRGDRSVTLRPEGTAGVVRAVLQHGLDRGQLPVKAAYAGPFFRYE-R 124

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----- 199
           P+ G  R R+       +  +           +     R +  +GL    +   S     
Sbjct: 125 PQEG--RYRQLQQVGIEAIGVDDPALDAEVIAVAD---RAYRSVGLDGFRLEVSSLGDET 179

Query: 200 -GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
             P   +   EF+   D  E     ++      +  +  +   + +   ++     P   
Sbjct: 180 CRPQYREKLQEFLFALDLDEETRRRAEINPLRVLDDKRPEVKAMTADAPLMIDNLTPEPK 239

Query: 259 TSDVHNEKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--- 304
                     D+L     V+ R             E  H    G +  +     + G   
Sbjct: 240 EHFEKVLGYLDALGVPYVVNPRLVRGLDYYTKTCFEFVHDG-LGAQSGIGGGGRYDGLVE 298

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL-INIKAHDQVCRD 363
             G    V    +G+G  R + A+        G   P   AP  ++  + +       RD
Sbjct: 299 QLGGREGVTGVGFGLGVDRTLLALAAE-----GKRAPA--APRVVAFGVPLGDD---ARD 348

Query: 364 ACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           A   +  RL  +G   D+ + +   + G+    AD  G    +I+G   ++D  V +K  
Sbjct: 349 AMVPLLGRLRALGVPSDMAYGNRAMK-GAM-KAADRSGARFALILGDSELADGVVMLKDL 406

Query: 422 LTGIREDMSLEEV 434
             G +  + L+ V
Sbjct: 407 ANGEQRAVPLDTV 419


>gi|194246926|emb|CAQ76827.1| prolyl-tRNA synthetase [Campylobacter concisus]
          Length = 105

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 48/71 (67%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          M+ SK++ P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG+   D ++ +++EE
Sbjct: 1  MKFSKFYAPTTKEAPKDASLPSHQFLIRGGFVEQIGSGLYNYLPLGKIMHDKISRVVKEE 60

Query: 61 QNRTGAIEMSV 71
           +  GA+E+S 
Sbjct: 61 MDEAGALEVSF 71


>gi|192360368|ref|YP_001981969.1| histidyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|190686533|gb|ACE84211.1| histidyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 423

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 150/433 (34%), Gaps = 44/433 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V A++ +   R G  E+  P +++ +L+  S G   D   K
Sbjct: 5   QAIRGMNDLLPADSPLWQYVEAVVTDILARYGYQEIRFPIVEATELFKRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y       + +   FR E RP+ G  R
Sbjct: 65  EMYTFEDRNGDSLTLRPEGTACCVRACEENGLLYNQT-QRLWYMGPMFRHE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-KSIPMR------AESGPIGG 204
            R+F      +F +           + +   RI   LG+  ++ ++      AE+     
Sbjct: 121 YRQFHQIGVETFGIQGPDIDAE---VLLLSARILRELGVGDAVQLQINSLGSAEARSAYK 177

Query: 205 DL--SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D   S+   V     E             + S++T    +++   ++  +    +     
Sbjct: 178 DALVSYLNQVAEQLDEDSKRRLGTNPLRILDSKDTSTQALLNNAPVLLDYLDEESHAHFE 237

Query: 263 HNEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--AD--GK 308
             ++L D+     +      RG++      F       G + ++     + G      GK
Sbjct: 238 GLKQLLDAAGIAYQVNPRLVRGLDYYGKTAFEWVTDKLGAQSTVCAGGRYDGLVEQLGGK 297

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV-APFKISLINIKAHDQVCRDACEK 367
                   +GIG  R+V  V          + P+ +     + L+ +    Q      E+
Sbjct: 298 ATPAV--GFGIGLERLVLLV------QALTVVPEGLDQQADVYLVAVGNVQQQAFQLAER 349

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIR 426
           I   L      +     G    +Q   AD  G  + +I+G   V D KV +K  R    +
Sbjct: 350 IRDELPF--VRLLAHCGGGNFKNQLKKADKSGADIALILGEDEVRDGKVVVKFLRDDVAQ 407

Query: 427 EDMSLEEVINYAS 439
           + +S E+ +   +
Sbjct: 408 QTLSQEDAVTLLA 420


>gi|21231048|ref|NP_636965.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768947|ref|YP_243709.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992061|ref|YP_001904071.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|30173176|sp|Q8PA92|SYS_XANCP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|81305089|sp|Q4UTD4|SYS_XANC8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229470725|sp|B0RUV8|SYS_XANCB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21112675|gb|AAM40889.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574279|gb|AAY49689.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733821|emb|CAP52027.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 426

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++ +  +  D    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFQ-TEVGDSKRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDAIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVE-L 288

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
               +PE S+  + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 289 VTACSPEDSEAEHQRMTRCAEVVLEKLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQAT 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|293376342|ref|ZP_06622579.1| glycine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292645031|gb|EFF63104.1| glycine--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 457

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 122/371 (32%), Gaps = 77/371 (20%)

Query: 90  GKEMLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            + M +     ++D      +   T + +  +       S + +PF   QI   FR+E+ 
Sbjct: 146 FELMFKTHMGVVSDEKSAVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEIT 205

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P     R+RE                              F ++ L+             
Sbjct: 206 PGNFTFRTRE------------------------------FEQMELEFFC---------- 225

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                       GE   +             N      ++   I ++  +P   +   + 
Sbjct: 226 ----------KPGEDAKWYEFWKEYC----WNWLVSLGMNPEHIRQREHSPEELSHYSNG 271

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGA 321
               +           G+     F           A F+  D    + +        +GA
Sbjct: 272 TSDIEYRFPFGWGELWGVANRTDFDLKAHM-KESGANFEYQDPTTNEKYVPYCIEPSVGA 330

Query: 322 MRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            RV  A +  ++  + +          +  ++AP+K++++ +        +   +++A L
Sbjct: 331 DRVTLAFLVDAYAEETLENGETREVLKFHPALAPYKVAVLPLVKK---LNEQALEVFADL 387

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           SK    V +D+ G  IG ++   D +G P  V      + D KV ++HR T  +E ++++
Sbjct: 388 SKHMM-VDYDEAG-TIGKRYRRQDAIGTPFCVTFDYDSLEDKKVTVRHRDTMEQERVAID 445

Query: 433 EVINYASHRFS 443
           E++ Y + +  
Sbjct: 446 ELVEYITSKIQ 456


>gi|153006815|ref|YP_001381140.1| seryl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152030388|gb|ABS28156.1| seryl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 463

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 8/170 (4%)

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
              +     G  E+  P L +A+    +G+   + +++ +     +  M   PT E  +T
Sbjct: 210 FFVDVHTSRGYTEILPPYLVTAETMTGTGQLPKFEEDLFKTQ--GESPMYLIPTAEVPVT 267

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           ++ R  I     LP ++      FR E     R   G++R  +F   +   F    E S 
Sbjct: 268 NMHRDEIFEANQLPISYCAWTPCFRAEAGAAGRDTRGLIRQHQFHKVELVKF-AKAEESY 326

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL-ADTGETQ 220
             + KM      +  RLGL        +G +G   +  + V     G+ Q
Sbjct: 327 AEHEKMVDDACEVLRRLGLHHRVSLLCTGDMGFSSAKTYDVEVWCPGQDQ 376


>gi|224282568|ref|ZP_03645890.1| glycyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 422

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 113/365 (30%), Gaps = 64/365 (17%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + D N    +   T + +  D       S    PF    +   FR+E+ P   + R+RE
Sbjct: 66  PVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTRE 125

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F +                                     G D   E+    
Sbjct: 126 FEQMEMEFFVVP------------------------------------GTD--EEWHQYW 147

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T+ +         +       + +   +         +        E    +   +
Sbjct: 148 IDTRTRWYTDLGINPENLRHYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANRTD 207

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             +S       H  + G   S      F  A G+     +     G  R + A +  ++D
Sbjct: 208 YDLS------AHSKHSGEDLS-----YFNQATGEKFVPYVIEPAAGLTRSLMAFLVDAYD 256

Query: 335 GKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                           +     +AP K +++ +    ++       + A L +    + +
Sbjct: 257 VDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-IAHDLAADLRQHEWMIDY 315

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++L++V +Y + R
Sbjct: 316 DEAGA-IGRRYRREDEIGTPLCITVDFDTIDDQAVTIRERDTMQQERVALDKVADYVAAR 374

Query: 442 FSNNR 446
            S  R
Sbjct: 375 VSEKR 379


>gi|166077788|gb|ABY80988.1| glutamyl-prolyl tRNA synthetase [Paramysis lacustris]
          Length = 145

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  +V   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTSXDKKQFVYQNSWGLT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A +++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDDERLALIKAADQLQKELVEGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|166077766|gb|ABY80977.1| glutamyl-prolyl tRNA synthetase [Paramysis incerta]
          Length = 145

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTSPDKKQYVYQNSWGLT-XRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDDERLALIKAAEQLQKELVEGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|288934095|ref|YP_003438154.1| histidyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|288888824|gb|ADC57142.1| histidyl-tRNA synthetase [Klebsiella variicola At-22]
          Length = 424

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 141/442 (31%), Gaps = 57/442 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQIGAEVFGLQGPDIDAE---LIMLTARWWRELGISD-HVSLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     + F  K   D            + S+N D   +++    +  +    + T  
Sbjct: 178 RDALVAYLEQFTDKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKTHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L D       V+ R +  G  +Y  T +      T  G+ G       G Y    
Sbjct: 238 AGLCALLDDAGIRYTVNQRLV-RGLDYYNRTVFEWV--TTSLGSQGT--VCAGGRYDGLV 292

Query: 322 M----RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLS 373
                R    V  +    + ++   +V P      +  I + A     + A  ++  ++ 
Sbjct: 293 EQLGGRATPGVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQV- 351

Query: 374 KVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                          G +             FA AD  G  + ++VG   ++D  V +K 
Sbjct: 352 ----------RDALPGVKLMTNHGGGNFKKQFARADKWGARIALVVGESEIADGNVVVKD 401

Query: 421 RLTGIREDMSLEEVINYASHRF 442
             +G +  ++ E V  +     
Sbjct: 402 LRSGEQTTVTQESVAAHLRTLL 423


>gi|256384091|gb|ACU78661.1| glycine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384923|gb|ACU79492.1| glycine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455486|gb|ADH21721.1| glycine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 456

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 120/365 (32%), Gaps = 70/365 (19%)

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +      + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTNQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P   +  +                K I +   +  I  +L 
Sbjct: 208 FIFRTREFEQMELEFF-FDPNDQRDWFKYWLDQIELFLT----KKICLDKSNYKIRENLK 262

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    A                 + + + +F+       +               N   
Sbjct: 263 DELAHYA-----------------LKTSDIEFNFPFGWGELWGISHRSDFDLKVHQNLSK 305

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D     +                                +     +    +G  R++ A
Sbjct: 306 EDLTVLKE-----------------------------ETNQKVLANVIEPSVGVERLMLA 336

Query: 328 V---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +         +E ++    +  P ++AP+++++  +            +++  L     D
Sbjct: 337 IFWQAYTEEQLEENNSRTVLKLPYNLAPYQVAITPLSKQ---LNQNANQLFLDLLN-DFD 392

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + + ++ ++ 
Sbjct: 393 AVYDETGN-IGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILISQLKDFL 451

Query: 439 SHRFS 443
           + +F+
Sbjct: 452 NSQFN 456


>gi|217316827|gb|ACK37819.1| putative glutamyl-prolyl tRNA synthetase [Nephropsis aculeata]
          Length = 134

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFDIVFEDPETQQKQYCFQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++++           Q   DAC K+ A L+  G     D   
Sbjct: 74  GLVLPPRVASVQAIIMSVGITVKTSDKEKQNLTDACNKLAADLNAAGVRTRCDLRD 129


>gi|253577336|ref|ZP_04854653.1| seryl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843236|gb|EES71267.1| seryl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 428

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 8/168 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +   N  G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYKGLGARLERALINFMMDLHSNEHGYEEMLPPYIVNQDSLYGTGQLPKFEEDLFKLTGS 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           ND      PT E  +T+  R  I +  +LP  +      FR E     R   G++R  +F
Sbjct: 225 NDYY--LIPTAEVPVTNYHRDEILNAEDLPRYYVAYSSCFRSEAGAAGRDTRGLIRQHQF 282

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +     + P+ S     KM  +  R+   LGL    +   +G +G
Sbjct: 283 NKVEMIKI-VHPDTSYDELEKMTENAERVLQLLGLPYRVLALCTGDMG 329


>gi|323704183|ref|ZP_08115762.1| glycyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536249|gb|EGB26021.1| glycyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 462

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 112/356 (31%), Gaps = 53/356 (14%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++ ++ S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVLRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +N      +     LGL+   +R        D S
Sbjct: 214 FTFRTREFEQMELEFFCKPGEDL-EWFNYWKEFCMNWLLNLGLRKENLRF------RDHS 266

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +       T +        FP            +   +        A  +       
Sbjct: 267 KEELSHYSNATTDI-----EYRFPFGWGELWGIADRTDFDLRRHMEHSGADLTYFDPVTN 321

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               P     S              + +L         +                     
Sbjct: 322 EKYTPYCIEPSVGA----------DRVALAFLIDAYNEE--------------------- 350

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+E +     +    +++P K +++ +        +   K+Y  L K    V +D+ G  
Sbjct: 351 VVEENDTRVVLKLHPALSPIKAAVLPLSKK---LGENAYKLYDELRK-DFVVDYDETG-S 405

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++   D +G P  +      ++D  V I+ R T  +  + + EV +Y   +  
Sbjct: 406 IGKRYRRQDEIGTPYCITYDFDSLNDESVTIRDRDTMQQIRIKINEVKSYLEAKLK 461


>gi|26553740|ref|NP_757674.1| histidyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|32130109|sp|Q8EWB8|SYH_MYCPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|26453747|dbj|BAC44078.1| histidyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 426

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/445 (13%), Positives = 145/445 (32%), Gaps = 48/445 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ +  +G Y       +  + +N +++   N     E+  P  +  +L++       D 
Sbjct: 1   MVIKKPRGTYDLFGEEIEVFNKINDVLKTISNTYNCHEIKTPIFEHKELYIRNIGESSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KE     D++D+ +   P +   +   +  + +      P  FY +   FR E RP+ 
Sbjct: 61  VTKEFYDFKDKSDRELALRPENTVGVIRSVVENKLLYTNPFPLKFYYLGPMFRYE-RPQS 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R+R+F         +      +    +  + L I  +L + +  ++     IG   +
Sbjct: 120 G--RNRQFYQFGIEFIGVK--NILNEIEGILFA-LDILKKLNITNWKLKV--NYIGSIET 172

Query: 208 HEFIVLADTGETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            E  + +       +  +   D       +     DD +  +    +             
Sbjct: 173 REKWINSLKKYFNKYKDELSEDSKNRIEKNPLRILDDKVDGSKSFVKSCPKIEEFLTKEE 232

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMG------- 315
           ++  D+  +  +      E       G  Y          +          +G       
Sbjct: 233 KEESDNFIKCLKTIVNEFEFDSTLVRGLDYYSGPVFEIVSQSNKLTGQSTIIGGGRYTKL 292

Query: 316 ----------SYGIGA--MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                      +G      R++ A      D    +  +SV    + + +I + +     
Sbjct: 293 TKELGDNDYICFGFALGMERLMLA----YRDENQFLSNNSV---DVYIASIGSVESEL-- 343

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKHR 421
                  +L  +   V  +   ++I  QF  ++   +   + +I G +   + +V +K++
Sbjct: 344 VAMNFANQLRNLNYRVEVNFDLKKIDKQFKNSN--KYNPKIILIYGDEDHKNKQVTLKNQ 401

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            T   + + L E+ N     F +++
Sbjct: 402 KTLENKVIKLNELNNKIKEFFESDK 426


>gi|294792129|ref|ZP_06757277.1| histidine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457359|gb|EFG25721.1| histidine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 452

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 139/446 (31%), Gaps = 51/446 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G   +LP        +   +RE     G  E+  P  +   L++       D 
Sbjct: 1   MAIRKPRGTQDFLPEQMINWHYIEQRMREICKIYGFNEIRTPAFEETKLFLRGIGETTDV 60

Query: 89  YGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM      D    +    P +       +  +    +     +Y +   FR + +P+
Sbjct: 61  VQKEMYTFTTGDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHD-KPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
            G  R R+F    A                M V   ++    GLK + +   S       
Sbjct: 120 AG--RYRQFHQFGAEVLGSQSPVVDSEVICMVV---QLLKDFGLKDLNVEVNSVGCPICR 174

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+  +    F    +  + Q+        +  P    D  +    +  +           
Sbjct: 175 PVYREKLIAFF---EPKKEQLCSDCQERLYKNPLRILDCKNETCKSLSIGAPEIHEHLCE 231

Query: 261 DVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT----------- 301
           + H+            +          RG++      F  +Y+ P+ A            
Sbjct: 232 ECHDHFEELKTYLTAANVQYTLNPRLVRGLDYYTKTAFEVQYT-PLGAQSAVAGGGRYDG 290

Query: 302 -FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG         + +G  R++ A+       K  + P+     + S   +   D  
Sbjct: 291 LVEELDGPHTPAI--GFAMGMERLLLAL------EKQNLLPEPT--VEPSAFVVALGDAA 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KI  +L  +   V  D  G+ + +Q   A+ +     +I+G   ++  +  I+ 
Sbjct: 341 KVE-AFKICQKLRSLDIPVEMDGQGKSMKAQLKYANKINAKYVIILGDDELARKEAIIRF 399

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             T  +E +SL  V      + ++ +
Sbjct: 400 MDTSEQETVSLNIVAEDIKAKINDEK 425


>gi|149928208|ref|ZP_01916453.1| seryl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149823099|gb|EDM82339.1| seryl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 429

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 20/253 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIEM 69
           D E+  H  L  + G+  + +    G    +  GQ  K    +   + +    + G  E 
Sbjct: 133 DFEVKDHVDLGEKLGLDFETAANLSGSRFAVLKGQIAKLHRALAQFMLDTHTEQHGYTEH 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSY 125
             P +   +    +G+   +  ++  +    ++     +   PT E  +T++    I   
Sbjct: 193 YTPYIVRGETLKGTGQLPKFADDLFSVKKGGEEGTSEPLYLIPTAEVTLTNLVADQILKA 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            +LP         FR E     R   G++R  +F   +       PE S  + ++M    
Sbjct: 253 SDLPIKMTAHSPCFRSEAGSYGRDTRGLIRQHQFDKVEMVRI-ENPENSYAALDEMTQHA 311

Query: 182 LRIFHRLGLKSIPMRAESGPI--GGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I  +LGL    +   +G +  G   +H  E  + A     ++    +   F       
Sbjct: 312 ENILQKLGLPYRVIVLCTGDMGFGSTRTHDIEVWLPAQNTYREISSCSNCETFQARRMKA 371

Query: 238 DFDDIISLNSIVE 250
            F +    +  V 
Sbjct: 372 RFKNEAGKSEFVH 384


>gi|261381397|ref|ZP_05985970.1| serine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284795610|gb|EFC50957.1| serine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 431

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMKGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D + K     PT E  +T+     I +  
Sbjct: 195 YTPYIVDDLTLQGTGQLPKFAEDLFHVTRGGDESKKTQYLIPTAEVTLTNTVADSIVAGS 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           + P         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 DFPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINVPAALQPY 421


>gi|282861791|ref|ZP_06270855.1| glycyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282563607|gb|EFB69145.1| glycyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 460

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/471 (15%), Positives = 151/471 (32%), Gaps = 78/471 (16%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G ++  S      K  + + PLG +  +N+          +    + +    + +
Sbjct: 12  LSKRRGFVYPCSEIYGGQKAAWDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILA 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            ++WV SG   ++   +      + +         +EE      ++ +    +L      
Sbjct: 72  PEVWVASGHVATFSDPLTECTSCHKRYRADHLEEAYEEKHG---KAPLNGLADLNCPNCG 128

Query: 135 IQLKFRDELRPRFGVMRSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            +  F  E +   G++ +             L PE ++            IF   G    
Sbjct: 129 NKGTF-TEPKQFSGLLSTHLGPTQDSGSVAYLRPETAQ-----------GIFTNFG---- 172

Query: 194 PMRAESGP--------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            ++  S          +G    +E         T+ F   +   F  P E+ ++ +    
Sbjct: 173 QVQQTSRKKPPFGIAQMGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWQEYWMQ 232

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------T 292
                         +    E       +    S R  ++ + F FG             T
Sbjct: 233 QRWNWYTGLGMREENMRWFEH---PQEKLSHYSKRTADIEYRFRFGGSEWGELEGVANRT 289

Query: 293 KYSLPMSAT--------FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------- 337
            Y L   +         F     + +   +     G  R + A +  ++           
Sbjct: 290 DYDLTAHSKASGTDLSYFDQEKSERYTPYVIEPAAGVGRAMLAFLLDAYSEDEAPNAKGV 349

Query: 338 ------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                 +     +AP K++++ +  + Q      + + A L +   ++ +DD G  IG +
Sbjct: 350 MEKRAVMRLDPRLAPVKVAVLPLSRNPQ-LSPKAKGLAADLRQ-NWNIEFDDAGA-IGRR 406

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +   D +G P  V V    + D+ V ++ R T  +E +SL+++  Y   R 
Sbjct: 407 YRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVSLDQIQAYLGSRL 457


>gi|199599331|ref|ZP_03212729.1| Histidyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|229552367|ref|ZP_04441092.1| histidine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258539738|ref|YP_003174237.1| histidyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|199589770|gb|EDY97878.1| Histidyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|229314269|gb|EEN80242.1| histidine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257151414|emb|CAR90386.1| Histidyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 427

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 141/431 (32%), Gaps = 42/431 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V A+ R+   +    E+  P  ++ D++  S     D 
Sbjct: 1   MNYQRPKGTADILPGQSERWQQVEAVARKIFAQYQYREIRTPIFENVDVFSRSAGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ M   P     +   +  +         P+  Y +   FR E RP+
Sbjct: 61  VTKEMYTFEDKGDRMMALRPEGTAGVVRAYVENKLYGPEYAKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESG--- 200
            G  R R+F      +F             +    L       LK +        +    
Sbjct: 120 SG--RQRQFHQIGVEAFGSDSPVLDAETLALAKQLLEALGAKHLKFVINSLGDPATRKAF 177

Query: 201 ---------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P   +LS +  V       ++  SKD  D  I ++     D ++  +    
Sbjct: 178 HAALVDYLTPFKDELSEDSKVRLVKNPLRILDSKDKHDQEIVADAPSILDYLTPEAQQHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFY-FGTKYSLPM-SATFKG---A 305
                  T      ++  ++          I EV      FG  Y+  +    + G    
Sbjct: 238 DRVKSLLTGLGIEFEVDATMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEE 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R++   +    D +       V P    ++ I   DQ      
Sbjct: 298 LGGPETPGIG-FAMGVERLM---LLMQGDQQ------PVQP-DAYIVTI---DQGADQEA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L + G     D MG +   QF  A+     L + +G        V++K+  TG 
Sbjct: 344 LQMLTALRQQGFTGEMDYMGRKAKGQFKAANKANAKLVLTIGESEREAGTVQVKNMATGQ 403

Query: 426 REDMSLEEVIN 436
           ++     +V+ 
Sbjct: 404 QKAFPQADVLA 414


>gi|45658196|ref|YP_002282.1| glycyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|59798554|sp|Q72PW7|SYG_LEPIC RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|45601438|gb|AAS70919.1| glycyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 464

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 150/447 (33%), Gaps = 68/447 (15%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML----- 94
           + P G + L N+  +  +         + +    L +  +W  SG   ++   ++     
Sbjct: 40  YGPYGVELLQNLKQLWWKYFVHLREDIVGLDSSILLNPKVWEASGHVSNFNDPLIDCKNC 99

Query: 95  --------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
                    L D+  +    G T E+ M  + +    S    P                R
Sbjct: 100 KTRIRADKFLEDQKGEGFATGLTLEK-MNQVIKE---SNFACP------------NCGQR 143

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESG 200
                +R+F +    S   + E S   Y +      +F+++  +          +     
Sbjct: 144 GTFTEARDFNLMFKTSHGASAEDSLDIYLRPETAQGIFLNFKNVVST---TRRKIPFGIA 200

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            IG    +E +       T+ F   +   F  P    ++        +            
Sbjct: 201 QIGKSFRNEIMARQFVFRTREFEQMEMEFFCEPGTQKEWFSHWVNYCMNWLTEQVGIKKE 260

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD------ 306
           ++   +               IE  + F +G        T Y L     F G D      
Sbjct: 261 NLRVREHEKEELSFYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFSGEDLKYQDQ 320

Query: 307 --GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIK 355
              K +   +    +G  R+  AV+  +++ + +          +   +AP K ++  + 
Sbjct: 321 VQNKKYVPFVVEPALGVNRLFLAVVTDAYEEEKLPDGETRTVLRFSPKIAPVKAAVFPLM 380

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D    +   +I+A LSK+G ++ +DD G  IG ++   D +G P  + V    + D+ 
Sbjct: 381 KKD-GLPEKSREIFADLSKLG-NIEYDDGGA-IGKRYRRQDEIGTPFCITVDYDTLKDNT 437

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R +  +E +++ ++ N+   R 
Sbjct: 438 VTVRERDSMSQERIAVNQLKNWLFERL 464


>gi|302541112|ref|ZP_07293454.1| histidine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458730|gb|EFL21823.1| histidine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 420

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 138/433 (31%), Gaps = 40/433 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  +P        V   I     R+G   +  P  ++ +L+        D   
Sbjct: 4   FKAPKGTYDLIPPASATYLAVRDAIATPLRRSGYGYIETPGFENVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRDELRPRFG 148
           KEM  L  +    +   P                ++   LP   +     +R E RP+ G
Sbjct: 64  KEMYTLTTKGGDELALRPEG-TASVLRAALEANLHKAGSLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM------RAESGPI 202
             R R F    A +              + +     +  LGL++  +       AE  P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILAHDAYRSLGLRNFRILLNSLGDAECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E             +  +       ++   ++  +          
Sbjct: 177 YRAALQDFLRGLDLDEDTRRRIDINPLRVLDDKRDAVQKQLAGAPLLRDYLCDGCREYHA 236

Query: 263 HNEKLFDSLPENKRV---SARGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKD 309
              +L  +            RG++      F       G++ ++     + G     G  
Sbjct: 237 RVRELITAQGVVFEDDVKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G + +G  R V A+     +G  +  PD+ + F + L       +  R     + 
Sbjct: 297 ALPSVG-WALGVDRTVLAL---EAEGVRLDLPDATSVFAVPL------GEEARKVLFGLV 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K G    +   G+ + +    A+  G    ++ G + +++  V++K   +G +E +
Sbjct: 347 GELRKEGVAADFAYGGKGLKAAMKAANRSGARYAIVAGERDLAEGVVQLKDMESGEQESV 406

Query: 430 SLEEVINYASHRF 442
            L +++     + 
Sbjct: 407 PLTKIVTTIQSKL 419


>gi|170078923|ref|YP_001735561.1| seryl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|238689047|sp|B1XJM0|SYS_SYNP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169886592|gb|ACB00306.1| seryl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 427

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L ++D    +G+   + +E  R AD +   + 
Sbjct: 176 GAALERALINFMLDQQIAAGYVEVMPPVLINSDSLTGTGQLPKFAEESFRCADDD---LW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I    NLP         FR E     +   G++R  +F   +  
Sbjct: 233 LTPTAEVPVTNLYRYEILEAENLPIYHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F + PE S   + K+  +   I   L L    +   SG +G         E  + +   
Sbjct: 293 KF-VHPETSAAEHEKLVANAEAILQALKLPYRVLELCSGDLGFSAGKCYDLEVWLPSADT 351

Query: 218 ETQVFCSKDFMDF 230
             ++    +F DF
Sbjct: 352 YREISSCSNFYDF 364


>gi|300933216|ref|ZP_07148472.1| glycyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 459

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/447 (14%), Positives = 142/447 (31%), Gaps = 64/447 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+           R   + +    +    +W  SG  + +     E L
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVTSRRDVVGLDSSVILPKRVWEVSGHVEVFTDPLVESL 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R     +     E+        H  +         +     +  E +   G++++ 
Sbjct: 92  HTHKRYRADHLLEAYEEKH------GHPPANGLADINDPETGQPGKWTEPKAFSGLLKTY 145

Query: 154 EFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEF 210
              + D      L PE ++  +            +   G+  +         G    +E 
Sbjct: 146 LGPVDDKEGLHYLRPETAQGIFTNFKNVMTTSRQKPPFGIAQV---------GKSFRNEI 196

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P E+ ++      +             +    E     
Sbjct: 197 TPGNFIFRTREFEQMEMEFFVKPGEDEEWHQKWIDDRYQWYIDLGIKEENLRLYEH---P 253

Query: 271 LPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKD 309
             +    S R ++V + F+F              T Y L + +   G D         + 
Sbjct: 254 QEKLSHYSKRTVDVEYAFHFKGSKWGELEGVANRTDYDLRVHSEGSGEDLSYFDQETNER 313

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
               +     G  R + A +  +++ +              +     +AP K++++ +  
Sbjct: 314 WIPYVIEPAAGLGRAMMAFLCDAYEEEEVPNAKGGTDTRTVLKLDRRLAPIKVAVLPLSK 373

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D       EK+  +L  +  +V +D  G  IG ++   D +G P  V V    + D+ V
Sbjct: 374 KD-TLTPTAEKVANQLRGLW-NVDYDVSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAV 430

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R T  +E + ++++  Y   R +
Sbjct: 431 TVRERDTMEQERVKIDDLQAYLGERLA 457


>gi|148559314|ref|YP_001258859.1| seryl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|148370571|gb|ABQ60550.1| seryl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 469

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 218 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 273

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 274 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 332

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 333 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 392

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 393 SSCSTCGDFQGRRMNARY 410


>gi|301056404|ref|YP_003794615.1| glycyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378573|gb|ADK07477.1| glycyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|229020149|ref|ZP_04176925.1| Glycyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228741158|gb|EEL91380.1| Glycyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 455

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 208 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 250

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 251 EESMRLRDHGEEELSH---------------YSNATTDIEFRFPFGWGELWGVASRTDFD 295

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 296 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 335

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 336 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 391

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 392 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 450

Query: 440 HRFS 443
            +  
Sbjct: 451 KKIQ 454


>gi|188585917|ref|YP_001917462.1| histidyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229558698|sp|B2A2F9|SYH_NATTJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|179350604|gb|ACB84874.1| histidyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 421

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 133/435 (30%), Gaps = 42/435 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+ +  +G    LP        +    ++  N  G  E+  P  +  +L+  S     D 
Sbjct: 1   MLTKAPRGTKDILPQESSKWHALEETAKKISNLYGFNEVRFPIFEHTELFTRSVGETSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR D+++   P        ++  H       P  +Y I   FR + RP+ G
Sbjct: 61  VSKEMYTFTDRGDRSLTLRPEGTAPAARLYVEHKLFNEPQPVKYYYIGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS- 207
             R R+F       F      +     K+ + Y   F  LGL  + ++  S  +G     
Sbjct: 120 --RYRQFHQFGVEVFGSLEPETDVEVMKLLLDY---FEALGLSGLELKLNS--VGCKECR 172

Query: 208 ----HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
               +E     +     +           P    D        +I E             
Sbjct: 173 QKYLNELSNYFEGKIDHICQDCYQRYQTNPMRVLDCKKKSCREAIGEDVPLIVNYLCQDC 232

Query: 264 NEKLFDSLPE-NKRVSARGIE----VGHIFYFGTKYSLPMSA----TFKGADGKDHYVQM 314
                              I+     G  +Y  T + + M +       G  G+  Y+  
Sbjct: 233 ATHFDKVKEILTSLNLPYQIDPHLVRGLDYYTKTAFEVVMPSLGAQDALGGGGRYDYLVE 292

Query: 315 GSYG---------IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
              G         +G  R++ A+     + K I         K+    I   ++  +   
Sbjct: 293 ECGGPPTPGVGFAVGLERILLAL-----EQKEINLDQE---EKLDFYFIATGEE-AKQEA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+ A + + G     D     + +Q   A+       +I+G   +++   +IK    G 
Sbjct: 344 FKLLATVREEGYSAVMDFERRSMRAQMKRANKANARFSLILGEAELNEQTCQIKDMEAGE 403

Query: 426 REDMSLEEVINYASH 440
           +  + L+        
Sbjct: 404 QFQVPLKSFEERIKE 418


>gi|217316843|gb|ACK37827.1| putative glutamyl-prolyl tRNA synthetase [Coutierella tonkinensis]
          Length = 134

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+   + +  +    S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFDIVFEDPENQQKQFCYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +               +AC K+   L   G     D   
Sbjct: 74  GLVLPPRVATIQAVVVPVGITVKTSEQERANIYNACSKLTEELKACGVRGRCDLRD 129


>gi|237785257|ref|YP_002905962.1| glycyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758169|gb|ACR17419.1| glycyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 460

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/487 (14%), Positives = 140/487 (28%), Gaps = 144/487 (29%)

Query: 40  YSWLPLGQKALDNVN-AIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGK------ 91
           + + PLG +  +N+     R      G  + +    +   ++WV SG   ++        
Sbjct: 33  WDYGPLGVELKENIKKQWWRTFVQSRGDMVGLDSSIILPREVWVSSGHVKTFTDPLVESL 92

Query: 92  --------------------------------------------EMLR--------LADR 99
                                                       +M            D 
Sbjct: 93  HTHKRYRADHLIEAYEAKHGHPPANGLADVPDPETGQPGEWTEPQMFSGLMKTYLGPVDN 152

Query: 100 NDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +      P   + +   F++    S +  PF   Q+   FR+E+ P   + R+REF   
Sbjct: 153 EEGLHYLRPETAQGIFVNFKNVQTTSRKKPPFGIGQLGKAFRNEITPGNFIFRTREF--- 209

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                    E  +  Y                                   F+  AD  +
Sbjct: 210 ---------EQMEIEY-----------------------------------FVPPADAPQ 225

Query: 219 T-QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
               +    +  F     + D      +        +      +           E   +
Sbjct: 226 HFDRWVEDCWNWFVDLGIDPDHLRKFDVPEDERAHYSDRTIDLEYQFGFAGSGWGELMGI 285

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMR-VVAAV 328
           + R           T + L       G D        G+ +   +     G  R ++A +
Sbjct: 286 ANR-----------TDFDLQSHIKGSGEDLSFFAQPTGERYVPYVIEPSFGLTRSLMAFL 334

Query: 329 IESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           I++ H+ +                   +AP K++++ +   D       EK+   L  + 
Sbjct: 335 IDAYHEDEAPNAKGGVDKRTVLRLDRRLAPVKVAVLPLSKKD-TLTPTAEKVAQDLRGLW 393

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +D  G  IG ++   D +G P  V V    + D  V ++ R T  +E +S++++  
Sbjct: 394 -NVDYDISGA-IGRRYRRQDEIGTPFCVTVDFDTLDDHAVTVRERDTMEQERVSIDKLQG 451

Query: 437 YASHRFS 443
           Y + R +
Sbjct: 452 YLAERLA 458


>gi|22125253|ref|NP_668676.1| histidyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|21958124|gb|AAM84927.1|AE013738_4 histidine tRNA synthetase [Yersinia pestis KIM 10]
          Length = 424

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 140/433 (32%), Gaps = 45/433 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + +I+++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIESILKQVLSGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCARAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLPGPDIDAE---LILLTARWWRALGI-FEHVKLELNSIGSLAARADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   ++     +  +    +    
Sbjct: 178 REALVAFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQLLDDAPKLSDYLDEESKQHF 237

Query: 262 VHNEKLFDS---LPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--AD--G 307
               +L D             RG++  +           G + ++     + G      G
Sbjct: 238 AGLCELLDKASIPYTVNERLVRGLDYYNRTVFEWVTHSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACE 366
           +        + +G  R+V  V   + D +        A     +I+     Q       E
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVNADFQVP------ATVDAYVISSGEGAQSAAMLLAE 349

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L  +     +     +   QF  AD  G  + +++G   V+  +V +K    G +
Sbjct: 350 SLRDALPTLKIMTNYGGGNVK--KQFTRADKWGARVALMLGESEVAAQQVVVKDLRNGEQ 407

Query: 427 EDMSLEEVINYAS 439
           E ++  +V    +
Sbjct: 408 ETLAQADVAARLA 420


>gi|302878619|ref|YP_003847183.1| histidyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302581408|gb|ADL55419.1| histidyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 424

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 137/442 (30%), Gaps = 54/442 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +       ++R+     G   + +P ++   L+  + G   D   K
Sbjct: 7   QAVRGMNDILPDEAELWLWFEGVVRDWLASYGYRNIRMPLVEPTSLFCRAIGEVTDIVEK 66

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D  N   +   P            H   Y N P   Y     FR E RP+ G  
Sbjct: 67  EMYSFEDSLNGDQLTLRPEGTASCVRAVLQHNLLY-NAPQRLYYSGPMFRHE-RPQKG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHE 209
           R R+F      +              M     R++ +LGL  + ++  + G +     H 
Sbjct: 123 RYRQFHQVGVEALGFAGPDIDAEQILMCA---RLWKKLGLTDVTLQLNTLGDVESRQRHR 179

Query: 210 FIVLA-----------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ- 251
             ++A                  +   ++  SK+     +        D +   ++    
Sbjct: 180 AKLIAYFEQNKELMDAEAVRRLHSNPLRILDSKNPAMQELIEAAPRLMDELDEAALSHFA 239

Query: 252 ------WTAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                      A   +    +  D       + V+ R    G I   G +Y        +
Sbjct: 240 AVQAILTQHGVAFEINPRLVRGLDYYNRTVFEWVTTRLGAQGTI-CAGGRY----DGLVE 294

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              GK        + +G  R++  +        G+  P      ++ +  +    ++   
Sbjct: 295 QIGGKPAPAM--GFAMGIERLLVLL-----QEAGMALPKP----QVDVYVVHQG-ELAAR 342

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  +L   G  V     G    SQ   AD  G  + V++G      ++V +K    
Sbjct: 343 LASSVAEQLRDYGLRVVMHCGGGSFKSQMKKADASGACVAVVIGDDEAQSNEVSVKPMQG 402

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G +E +S++ +    +      
Sbjct: 403 GAQERVSVQNLATTINKLIKQE 424


>gi|262382896|ref|ZP_06076033.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|262295774|gb|EEY83705.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
          Length = 514

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 122/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +M   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 DMGSTADGATKIYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K   + L+    LGL     R           H+  
Sbjct: 261 MREFEQMEMQFF-VRPGEEIEWFKKWKSTRLKWHQALGLGDEKYR----------YHDHE 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I  +    +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAATDIEFEMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  RV  +++  
Sbjct: 345 QH------------------EKFSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSIMAG 386

Query: 332 SHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +  E+I   L +      +D
Sbjct: 387 SYCEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIINML-RFDFRCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  + + 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERISIDKLHDIITEKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|237815315|ref|ZP_04594313.1| seryl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790152|gb|EEP64362.1| seryl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 469

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 218 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 273

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 274 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 332

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 333 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 392

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 393 SSCSTCGDFQGRRMNARY 410


>gi|315644417|ref|ZP_07897550.1| seryl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315280167|gb|EFU43460.1| seryl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 427

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + + + +   ++ G  EM  P + + D    +G+   + +++ +++D 
Sbjct: 165 FYKGLGARLERALISFMMDLHSDKHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKISDT 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T+  R  I +  +LP  +      FR E     R   G++R  +F
Sbjct: 225 D---YYLIPTAEVPVTNYHREEILNIEDLPKYYVAYSSCFRSEAGAAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +     + PE S     KM     R+   L L    M   +G +G
Sbjct: 282 NKVEMVKI-VNPETSFDELEKMTTDAERVLQLLNLPYRVMALCTGDMG 328


>gi|256830601|ref|YP_003159329.1| histidyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256579777|gb|ACU90913.1| histidyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 417

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 135/402 (33%), Gaps = 29/402 (7%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  + R+     G  E+ VP L+  +L+  S     D   KEM   ADR  +++   P  
Sbjct: 24  MENLARQVFGTYGCQEVRVPILEKTELFARSIGEETDVVQKEMYTFADRKGRSLTMRPEA 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   F    +         +     FR E RP+ G  R R+F   D          +
Sbjct: 84  TAGVLRAFIESGQCGAEGTTKLFACGPMFRYE-RPQKG--RLRQFHQLDVEVLGTDAPQA 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTG---ETQV 221
                 M  ++L    +LGLK++ +   S       P+      +F+   D     E   
Sbjct: 141 DAEVVLMLWTFL---TKLGLKNLGLELNSLGCPECRPVFHQRLRDFLATIDHTQLCEDCK 197

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
             ++      +  +      ++     + +   P           + DS     R++ R 
Sbjct: 198 RRAQTNPLRVLDCKVPACKSLVENAPSIAESLCPGCDEHFAQVRDILDSAKLPYRLNDRL 257

Query: 282 IEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           +  G  +Y  T +   S  + A    A G  +   +   G   +  +            +
Sbjct: 258 V-RGLDYYQRTTFEVVSGEIGAQTAVAGGGRYDGLIKQLGGPDLPGIGFACGMER----L 312

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVAD 396
                 A        +   D    +    +  R+ + G   +V ++     I +Q   A+
Sbjct: 313 ALLYGQAQIPAPDFYLAVLDSRALNTALLLAQRMRERGFSGEVSFEAR--SIKAQMRQAN 370

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            LG    +I+G   +   ++ +K   TG+++++  +++    
Sbjct: 371 KLGVKTCLILGQDEMEKGQIVVKDMATGVQKNIGQDDLEQAL 412


>gi|297248235|ref|ZP_06931953.1| seryl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|297175404|gb|EFH34751.1| seryl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 469

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 218 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 273

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 274 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGAAGRDTRGMLRQHQFLKVEMVSI-T 332

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 333 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 392

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 393 SSCSTCGDFQGRRMNARY 410


>gi|320104779|ref|YP_004180370.1| glycyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
 gi|319752061|gb|ADV63821.1| glycyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
          Length = 513

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 108/348 (31%), Gaps = 64/348 (18%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++   + R  +PF   QI   FR+E+ PR    RSREF   +   F
Sbjct: 202 YLRPETAQGIFANFKNVCDTTRLKIPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEFF 261

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
              P+ +   Y     +    + R GL+S  +R                 A+        
Sbjct: 262 CH-PDEAATWYRYWRDARFAWYVRHGLRSDRLRLRD-----------HDPAELAFYSTAT 309

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +     FP      +         + +                                 
Sbjct: 310 ADIEYAFPFGVSELEGIAHRGDYDLTQH-------------------------------- 337

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------ 337
                    K+S    + F     +     +     GA R   A +  ++          
Sbjct: 338 --------QKFSGKDLSYFDDETKQRFVPHVIEPSAGADRATLAFLCEAYHEDEVGGEAR 389

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             + +   +AP K +++ +   D    +   KIY  L     +VF+D+ G  IG ++   
Sbjct: 390 TVLKFHPRLAPIKAAVLPLVKKD-GMPEMAAKIYRELKTH-YNVFYDEKGA-IGRRYRRQ 446

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D +G P  + +  + + D  V I+ R    +  +    ++   +   +
Sbjct: 447 DEVGTPFCLTIDGQSLQDGTVTIRDRDDCRQWRVPSANIVGVLASLMA 494



 Score = 38.0 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNV-NAIIREEQNRTG-AIEMSVPTLQS 76
           L  R G I   S       G + + PLG +   N+  A  R+        + +    + +
Sbjct: 9   LCKRRGFIFPSSEIYGGLNGFWDYGPLGVELKRNIKEAWWRDNVTARDDMVGLDCSIIMN 68

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMI 105
             +W  SG    +   M+       +   
Sbjct: 69  PKVWEASGHVGGFSDPMVDCKATQGRYRA 97


>gi|258508557|ref|YP_003171308.1| histidyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|257148484|emb|CAR87457.1| Histidyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|259649864|dbj|BAI42026.1| histidyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 427

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 141/431 (32%), Gaps = 42/431 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V A+ R+   +    E+  P  ++ D++  S     D 
Sbjct: 1   MNYQRPKGTADILPGQSERWQQVEAVARKIFAQYQYREIRTPIFENVDVFSRSVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ M   P     +   +  +         P+  Y +   FR E RP+
Sbjct: 61  VTKEMYTFEDKGDRMMALRPEGTAGVVRAYVENKLYGPEYAKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESG--- 200
            G  R R+F      +F             +    L       LK +        +    
Sbjct: 120 SG--RQRQFHQIGVEAFGSDSPVLDAETLALAKQLLEALGAKHLKFVINSLGDPATRKAF 177

Query: 201 ---------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P   +LS +  V       ++  SKD  D  I ++     D ++  +    
Sbjct: 178 HAALVDYLTPFKDELSEDSKVRLVKNPLRILDSKDKHDQEIVADAPSILDYLTPEAQQHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFY-FGTKYSLPM-SATFKG---A 305
                  T      ++  ++          I EV      FG  Y+  +    + G    
Sbjct: 238 DRVKSLLTGLGIEFEVDATMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEE 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R++   +    D +       V P    ++ I   DQ      
Sbjct: 298 LGGPETPGIG-FAMGVERLM---LLMQGDQQ------PVQP-DAYIVTI---DQGADQEA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L + G     D MG +   QF  A+     L + +G        V++K+  TG 
Sbjct: 344 LQMLTALRQQGFTGEMDYMGRKAKGQFKAANKANAKLVLTIGESEREAGTVQVKNMATGQ 403

Query: 426 REDMSLEEVIN 436
           ++     +V+ 
Sbjct: 404 QKAFPQADVLA 414


>gi|332288522|ref|YP_004419374.1| histidyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330431418|gb|AEC16477.1| histidyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 427

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 147/433 (33%), Gaps = 44/433 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V   I++  +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPSDTPLWQWVEGKIKQRLSSYGYSEIRMPIVESTPLFARAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR+D+++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMFTFNDRDDESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F +     +     + +   +++  LG+    ++ +   IG   + +  
Sbjct: 122 YRQFHQCGVEVFGIANPLIEAE---LIIMTAKLWQDLGIAD-HVQLQLNSIGSLEARKNY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE---KLF 268
             A     Q +  +   D            + S +  V+Q         D  +E   + F
Sbjct: 178 RAALVEYLQDYVDQLDEDSKRRLTTNPLRILDSKDERVQQILNNAPKLHDYLDEDSRQHF 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSAT--------FKG--ADGKD 309
            +L           E+      G  Y         +  + A         + G       
Sbjct: 238 ATLCSILEQYGIRYEINQKLVRGLDYYNKTVFEWVTTALGAQGTVCGGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H      + +G  R+V  ++         I P+      + +  I   D        ++ 
Sbjct: 298 HATPAVGFAMGLERLV--LLIQEVVENPPINPN------VDIYVIHQGDNTTLP-ALQLA 348

Query: 370 ARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           ++L        V     G     QF  AD LG    +I+G   V+  +V IK  L+G ++
Sbjct: 349 SQLRSALPQIKVMLHCSGGNFKKQFKRADKLGAKFALILGEDEVAQQQVVIKDLLSGEQQ 408

Query: 428 -DMSLEEVINYAS 439
             ++  +V+ Y +
Sbjct: 409 ITLANTDVVGYLT 421


>gi|217316813|gb|ACK37812.1| putative glutamyl-prolyl tRNA synthetase [Procambarus clarkii]
          Length = 127

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+G+   R +  +I    D K
Sbjct: 14  SGRGIQGATSHHLGQNFSKMFEIIFEDPETQQKQYCYQNSWGLT-TRTIGVMIMVHGDNK 72

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           G++ P  VA  +  ++ +               DAC K+ + L+  G     D  
Sbjct: 73  GLVLPPQVACVQAIIMPVGITAKSSEQDKSKLMDACNKLASDLTTAGVRARCDLR 127


>gi|17983051|gb|AAL52263.1| seryl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
          Length = 469

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 218 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 273

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 274 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 332

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 333 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 392

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 393 SSCSTCGDFQGRRMNARY 410


>gi|300774783|ref|ZP_07084646.1| glycine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300506598|gb|EFK37733.1| glycine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 530

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 115/341 (33%), Gaps = 49/341 (14%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +       S   LPF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 236 TAQGIFVNFLNVQKTSRHKLPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVA-PG 294

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                Y +     L     LGL             GD ++ F             +    
Sbjct: 295 TELEFYEQWKQKRLNWHRALGL-------------GDENYRFHDHEKLAHYANAAADIEF 341

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +FP   +  +     +   +                E+  + +P     S     VG   
Sbjct: 342 NFPFGFKELEGIHSRTDFDLKAHEEFSGRKLQFFDPERNENYVPYVVETS-----VGLDR 396

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            F + +S  +       DG +  V                         +  P ++AP K
Sbjct: 397 LFLSIFSHCLRDEVL-EDGSERTV-------------------------LSLPPALAPIK 430

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +   D +  +  EKI+  L K   ++F+++    IG ++   D +G P  + V  
Sbjct: 431 AAILPLMKKDGLA-EYAEKIFNDL-KYDFNLFYEEKDA-IGKRYRRQDAIGTPYCITVDH 487

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             ++D  V I+ R T  +E + + E+        +N R +L
Sbjct: 488 DSLTDHTVTIRDRDTMQQERVPVSEL-RRIIDEKTNFRNLL 527


>gi|291531007|emb|CBK96592.1| histidyl-tRNA synthetase [Eubacterium siraeum 70/3]
          Length = 426

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/423 (15%), Positives = 127/423 (30%), Gaps = 40/423 (9%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V  I R      G  E+  PT +  +L+     G  D   KEM    D+ 
Sbjct: 15  LPKEIYKWHTVEKIARNVAEAYGCKEIRTPTFEHTELFQRGVGGTTDVVQKEMYTFNDKK 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P            +      LP   Y     FR E  P+ G  R REF     
Sbjct: 75  GRSITLKPEGTAGAVRAVIENGLLNDVLPLKTYYFTRCFRYEA-PQSG--RLREFNQVGI 131

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFI--- 211
             F      +      +      I   LG+K+I +   S               E+    
Sbjct: 132 EYFGTASPAADAE---VIALANDIIKSLGVKNISLEINSIGCPKCRAEYHKALKEYYSQY 188

Query: 212 --VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              L  T   ++  +   +        + F     +              +      +  
Sbjct: 189 KDQLCGTCLERLDRNPMRLLDCKSEICSSFKKDAPMILDYLCDDCREHFENVKKRLDVLG 248

Query: 270 SLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGS-----YGIG 320
                  +  RG++     +F F +       A   G   +G    +   S     + +G
Sbjct: 249 VSYTVNPLIVRGLDYYTNTVFEFISNEIGSQGAVCAGGRYNGLVEEIGGNSVPGLGFAMG 308

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++  ++  +   +         P K   + I + D        ++  +L + G    
Sbjct: 309 LERII--MVMENQKLEFE-------PEKKCDLYIASFDDETSIYAMELVQKLREEGFWAE 359

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G    +Q   A+ +G    +++G   ++    ++K    G    ++L++     S 
Sbjct: 360 CDISGRSFKAQMKYANKIGATYCMVIGGDEMNTKSAKLKRMSDGTETPVTLDD---KFSE 416

Query: 441 RFS 443
           + +
Sbjct: 417 KLN 419


>gi|332288166|ref|YP_004419018.1| seryl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330431062|gb|AEC16121.1| seryl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 428

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 11/196 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDK 102
              +    +   + +    + G +EM VP L + +    +G+   +G+++        ++
Sbjct: 169 KIARLHRALAQFMLDLHTEQHGYLEMYVPYLVNHETLYGTGQLPKFGEDLFHTKPLEGEQ 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                PT E  +T+  R  I    +LP         FR E     R   G++R  +F   
Sbjct: 229 PYALIPTAEVPVTNTVRGEILGAEDLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLA 214
           +     + PE S  +  ++     ++   LGL    +   +G +G         E  V A
Sbjct: 289 ELVQI-VEPEKSMDALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSCKTYDLEVWVPA 347

Query: 215 DTGETQVFCSKDFMDF 230
                ++    +  DF
Sbjct: 348 QNTYREISSCSNMWDF 363


>gi|168187502|ref|ZP_02622137.1| histidyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294553|gb|EDS76686.1| histidyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 416

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 135/433 (31%), Gaps = 45/433 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP+       +   +++        E+  P  +  +L+        D 
Sbjct: 1   MAIQAPKGTKDLLPMDSYKWHYIEDKLKKLAEEYALKEIRTPIFEHTELFERGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++   P         F  +      LP   +     FR E      
Sbjct: 61  VQKEMYTFKDKGDRSITLKPEGTAPAARAFIENGLFNEALPIKMFYFTPVFRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPI 202
             R RE        F             +    +R F   G+ S+          E    
Sbjct: 118 KGRLREHHQFGVEVFGSPEASVDAE---LIGLAMRAFKEFGIDSLELNINNIGCPECRKK 174

Query: 203 GGDLSHEFIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             D   E+   +  +  +T     +      +  +N    +I     I+  +        
Sbjct: 175 YNDALREYFRASYDELCDTCKARFERNPMRLLDCKNKRCKEIGKDAPIILDYVCDDCKNH 234

Query: 261 DVHNEKLFDSLPENKR---VSARGIEVGHIFYF-----------GTKYSLPMSATFKGAD 306
             + +    SL    +      RG++      F           G +Y    +   +   
Sbjct: 235 FENLKTYLGSLNIEYKVNPYIVRGLDYYTKTVFEIINNDITVCGGGRY----NGLIEQIG 290

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK        +G+G  R++  ++E++     I  P    P ++ +      D+   +   
Sbjct: 291 GKPTPAV--GFGMGIERLILTLMENN-----IEIPK---PKEMDIFIGSMGDKGKIE-AF 339

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L   G     D M + + +Q   A+ +     +I+G   + + K  +K    G +
Sbjct: 340 KLANVLRSKGLKAECDHMNKSVKAQMKYANKIESLYSMIIGDTEIEEGKANLKRMEDGQQ 399

Query: 427 EDMSLEEVINYAS 439
            ++SL  +   AS
Sbjct: 400 FEVSLNNLDEIAS 412


>gi|21911351|ref|NP_665619.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896725|ref|NP_803075.1| histidyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|32130114|sp|Q8K5I9|SYH_STRP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|21905567|gb|AAM80422.1| putative histidyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811979|dbj|BAC64908.1| putative histidine-tRNA ligase [Streptococcus pyogenes SSI-1]
          Length = 426

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 SAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEAVKAML-------EALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       + L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMVI-----EKQGITLPIE-TEMDVYLAVLGDG- 339

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 340 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQEVEVSFED 412


>gi|229175609|ref|ZP_04303118.1| Glycyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228607867|gb|EEK65180.1| Glycyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 458

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFRFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|225627373|ref|ZP_03785410.1| seryl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617378|gb|EEH14423.1| seryl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 469

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 218 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 273

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 274 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 332

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 333 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 392

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 393 SSCSTCGDFQGRRMNARY 410


>gi|196249826|ref|ZP_03148522.1| glycyl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196210702|gb|EDY05465.1| glycyl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 460

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 135/438 (30%), Gaps = 44/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML--- 94
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNIKRAWWKKFVQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMVDCK 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVMRSR 153
           +   R+    +     EE   ++    +   +       Y I                 R
Sbjct: 92  QCKARHRADKLIEQALEEKGIEMVVDGLPLAKMEELIREYDIACPEC----GSRDFTNVR 147

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR----AESGPIGGDLSHE 209
           +F +       +T   +   Y +   +   IF         MR         IG    +E
Sbjct: 148 QFNLMFKTYQGVTESSANEIYLR-PETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNE 206

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEK 266
                 T  T+ F   +   F  P E   + D                        H ++
Sbjct: 207 ITPGNFTFRTREFEQMELEFFCKPGEELKWFDYWKQFCKEWLLSLGMNEEHIRLRDHTKE 266

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKGAD--------GKDHYVQM 314
                             G    +G    T Y L       G D         + +    
Sbjct: 267 ELSHYSNATTDIEYQFPFGWGELWGIASRTDYDLKQHMEHSGEDFHYLDQETNERYIPYC 326

Query: 315 GSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDAC 365
               +GA RV  A +  ++D + +             ++AP+K +++ +        D  
Sbjct: 327 IEPSLGADRVTLAFMIDAYDEEELEDGTTRTVMHLHPALAPYKAAVLPLSKK---LGDGA 383

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +IY  L+K    V +D+ G  IG ++   D +G P  +    +   D +V ++ R T  
Sbjct: 384 RRIYEELAKH-FMVDYDETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTME 441

Query: 426 REDMSLEEVINYASHRFS 443
           +  + + E+  +   + +
Sbjct: 442 QVRLPIGELKAFLDKKIA 459


>gi|167619822|ref|ZP_02388453.1| histidyl-tRNA synthetase [Burkholderia thailandensis Bt4]
          Length = 446

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 138/440 (31%), Gaps = 55/440 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLS 207
           +F      +       +      M     R++  LGL  I +       AE         
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 208 HEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +++             + + +    + ++N    +I+     +  +    +       +
Sbjct: 188 IKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQ 247

Query: 266 KLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHYVQ 313
           +L  +            RG++     +F       G + ++     +             
Sbjct: 248 RLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTA 307

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
              + +G  R++  + E             + P +  + +  +   D   R+    +  R
Sbjct: 308 ACGWAMGIERILELLKEEH-----------LVPEQEGVDVYVVHQGD-AAREQAFIVAER 355

Query: 372 LSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI- 425
           L   G DV      +  G+ F      AD  G    VI G   V++    +K  R TG  
Sbjct: 356 LRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDD 415

Query: 426 -----REDMSLEEVINYASH 440
                ++ + +E +  +  +
Sbjct: 416 GEKSVQQSVPVESLTEFLIN 435


>gi|166077776|gb|ABY80982.1| glutamyl-prolyl tRNA synthetase [Paramysis kessleri]
 gi|166077778|gb|ABY80983.1| glutamyl-prolyl tRNA synthetase [Paramysis kessleri]
 gi|166077780|gb|ABY80984.1| glutamyl-prolyl tRNA synthetase [Paramysis kessleri]
          Length = 145

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTAPDKKQYVYQNSWGLT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTEDERLALIKAAEQLQKELVEGDVRAECDFRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|123441419|ref|YP_001005406.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166228630|sp|A1JKS3|SYH_YERE8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122088380|emb|CAL11171.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 424

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 134/438 (30%), Gaps = 55/438 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LILLTARWWRALGISE-HVQLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD  E  V   +  +D                    +                  D  
Sbjct: 173 ARADYREALVTFLEQHVDVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDDE 232

Query: 272 PENK------------------RVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
            +                        RG++     +F       G + ++     + G  
Sbjct: 233 SKQHFAGLCELLNQAGIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLV 292

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VC 361
               G+        + +G  R+V  V   + + K        A   + LI+     Q   
Sbjct: 293 EQLGGRATPAV--GFAMGLERLVLLVQAVNPEFKVP------ATIDVYLISSGEGTQSAA 344

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++   L  +     +     +   Q   AD  G  + +I+G   V+  +V +K  
Sbjct: 345 MQLAERVRDVLPTLKLMTNYGGGNFK--KQITRADKWGARVALILGESEVAAQQVVVKDL 402

Query: 422 LTGIREDMSLEEVINYAS 439
             G +E ++  +V    +
Sbjct: 403 RNGEQETLAQADVAARLA 420


>gi|119774911|ref|YP_927651.1| seryl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|166223284|sp|A1S6H5|SYS_SHEAM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|119767411|gb|ABL99981.1| seryl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 428

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H  +  T  G+  + +    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 VKDHVDLGETLGGLDFKSAVKITGSRFIVMKGQIARMHRALAQFMLDLHTIEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L + D  + +G+   + +++   + A    +A+   PT E  +T++ R  I    +LP
Sbjct: 196 PLLVNTDSLLGTGQLPKFSEDLFNLKPATEEGQALSLIPTAEVPVTNLVRDTILDEADLP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +  +M      + 
Sbjct: 256 IKITAHTACFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VKPENSMDALEQMVGHAENVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            +LGL    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 315 KKLGLPYRTVVLCTGDMGFGAAKTYDIEVWLPAQNTYREISSCSNVKDF 363


>gi|319408334|emb|CBI81987.1| Seryl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 425

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   +  G  E+SVP L   ++   +G+   +  ++ +  D          T
Sbjct: 176 RALGQFMLDMHVDEHGYTEVSVPLLVRDEIVYGAGQLPKFSDDLFQTTDGK----WLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  + ++  S +    +LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLVNLVNSEVLDISDLPLRFSSLTPCFRSEAGAAGRDTRGMLRQHQFWKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           T E S     +M      +  RLGL    +   +G +G
Sbjct: 291 TEEQSLIELERMTECAENVLKRLGLPFRTVLLSTGDMG 328


>gi|313902776|ref|ZP_07836173.1| seryl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313466896|gb|EFR62413.1| seryl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 424

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 17/225 (7%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG + +  +   + +      G  E+  P L      + +G+   + ++  R+AD +   
Sbjct: 169 LGARLVRALIQFMLDLHTREHGYTEVLPPFLVHRQSMIGTGQLPKFEEDAFRVADSD--- 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R  I     LP         FR E     R   G++R  +F   +
Sbjct: 226 FYLVPTAEVPVTNLYRDEILDAGQLPIYHVAYTPCFRAEAGSAGRDTRGLIRQHQFDKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
              F + PE S   + K+      +  RLGL    +   +G +G          A   + 
Sbjct: 286 LVKF-VRPEASPEEHEKLVADAEAVLQRLGLPYRVVLICTGDMG-------FAQARQYDL 337

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +V+         I S + ++ D  +  + +     P A    VH 
Sbjct: 338 EVWMPSYGRYVEISSCS-NYRDYQARRANIRFRPEPGARPQFVHT 381


>gi|319947863|ref|ZP_08022050.1| glycyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438469|gb|EFV93402.1| glycyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 464

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 110/363 (30%), Gaps = 86/363 (23%)

Query: 104 MIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
               P   + +   +++    + R  PF   QI   FR+E+ P   + R+REF   +   
Sbjct: 161 HYLRPETAQGIFINYKNVMTTARRKPPFGIGQIGKAFRNEITPGNFIFRTREFEQMEI-- 218

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET--Q 220
                                                         EF V  D  +   +
Sbjct: 219 ----------------------------------------------EFFVKPDEADEWFK 232

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            +    +  F     + +      +        +      +       +   E   V+ R
Sbjct: 233 RWVEDCWDWFVDLGIDPENMRRFDVPDDERAHYSAGTIDFEYKFGFSGNEWGELMGVANR 292

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESS 332
                      T Y L    T  G D        G+ +   +     G  R + A +  +
Sbjct: 293 -----------TDYDLTQHQTHSGEDLQYFDQASGEKYVPYVIEPSFGLTRSLMAFLIDA 341

Query: 333 HDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +                 +     +AP K +++ + + +         + A+L K   +V
Sbjct: 342 YTEDEAPNAKGGVDTRTVLKLDRRLAPIKAAVLPL-SRNADLSPKARDLAAQLRK-NWNV 399

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +DD    IG ++   D +G P  + V    + D  V I+ R T  +E +++++V  Y +
Sbjct: 400 DFDDAQA-IGRRYRRHDEIGTPFCITVDFDTLEDQAVTIRERDTMAQERVAIDQVEGYLA 458

Query: 440 HRF 442
            R 
Sbjct: 459 QRL 461


>gi|317471458|ref|ZP_07930810.1| histidyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316901073|gb|EFV23035.1| histidyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 413

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 138/439 (31%), Gaps = 57/439 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI Q  +G   W     +    +  + ++        E+  P  +   L+  S     D 
Sbjct: 1   MITQAPRGTKDWFGEEMQKRTYLENVFKDLCETYNIHEIITPVFEHTVLFQRSVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ ++++   P         +  H       P   + I   FR E +P+ G
Sbjct: 61  VQKEMYTFEDKGNRSITLKPEGTAGAIRAYLEHGMQNEPQPVKMFYITPAFRYE-KPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+               ++     +  +++    ++GL    +   S  IG     
Sbjct: 120 --RLRQHHQFGIEFVGAESPLAEVELITLVTTFIN---KIGLSDAKLHINS--IGCS--- 169

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 D  E  +       D   P+     +         +  +               
Sbjct: 170 --NCRKDYNEALLAYLHRHEDKLCPTCRERMEKNPLRVIDCKVPSCKEIIKDAPRTIDYL 227

Query: 269 DSLPENK------------------RVSARGIEVGHI----FYFGTKYSLPMSATFKG-- 304
           D                            RG++        F  G  ++L     +    
Sbjct: 228 DEECREHFEELKSLLDSLNIPYEVDTGIVRGLDYYTKTVFEFVNGEGFTLCGGGRYDNLV 287

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL-INIKAHDQVC 361
              DGK     +G +G+G  R++  +     + +G   P   A   ++L + I   +   
Sbjct: 288 HEIDGKASMPSVG-FGMGVERILFFL-----EEEGAELP---AGRPLNLYVGILGKEAKA 338

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           R    +I + L   G  V  D +G   G +     A+ L     +I+G   + ++K  +K
Sbjct: 339 RAY--EIVSGLRMEGFKVETDYLGR--GVKAQMKYANKLRAQNTIIIGENELKENKGRLK 394

Query: 420 HRLTGIREDMSLEEVINYA 438
           +  +G   ++SL+++ N  
Sbjct: 395 NMESGEEIEISLDDIKNAL 413


>gi|88858479|ref|ZP_01133121.1| histidine tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88820096|gb|EAR29909.1| histidine tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 424

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 144/438 (32%), Gaps = 48/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +    V  I+R+     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDCLPGDTQVWQKVETILRDTVASFGYQEIRFPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P    V       +   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAVCVRAGNENGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F      SF +           + +   R++   G+    +R E   +G + + E  
Sbjct: 122 YRQFHQFGLESFGVATADMDAE---VILLTARLWQAFGVSKY-VRLELNSLGSNQAREEY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   I+     + Q     +A   
Sbjct: 178 RNALVAYLEQHIEHLDEDSKRRMYSNPLRVLDSKNPDVQAILGNAPKLSQHLDAESAEHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
            +  +  D+     +      RG++     +F       G + ++     + G      G
Sbjct: 238 ANLCERLDAAGVEYQVNEKLVRGLDYYNRTVFEWVTESLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K        + +G  R+V  + E    G             + L ++     +       
Sbjct: 298 KATPAV--GFAMGMERLVLLLQELDCVGDIRR------TSDVYLASLGDKASIQAPV--- 346

Query: 368 IYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG 424
           I A+L +   G  +     G     Q   AD     + +I+G   ++   V +K+ R   
Sbjct: 347 IAAQLREQVPGIRIMVHAGGGNFKKQLKRADKSDAVVALILGDDELAQGLVTVKYLREHK 406

Query: 425 IREDMSLEEVINYASHRF 442
            ++ + L +V    +   
Sbjct: 407 DQQTLELSQVATLLADLI 424


>gi|323466686|gb|ADX70373.1| Histidyl-tRNA synthetase [Lactobacillus helveticus H10]
          Length = 416

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 141/429 (32%), Gaps = 62/429 (14%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           +P    +   V    R   NR    E+  P+ ++ +++  S     +   K+M    D+ 
Sbjct: 1   MPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYDFNDKG 60

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            + +   P     +   +         +  PF  + ++  FR E RP+ G  R REF   
Sbjct: 61  GRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG--RQREFHQI 117

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------G 200
              SF  +   +      M      +   LG+K+  +   +                   
Sbjct: 118 GVESFGSSNPLADVQTIMMG---HDLLGELGVKNYQLHINTLGDEQVRKGYHDALVNYFT 174

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+  +LS +          ++  SKD  D     +     D ++ NS     +       
Sbjct: 175 PVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLNDNSKANFESILKMLDQ 234

Query: 261 DVHNEKLFD-----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
              +  + D            + E         E       G +Y        +  +G +
Sbjct: 235 LGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRY----DHLVEEFNGPE 290

Query: 310 HYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                  +GIG  R++  V+E         +GI            + NI    +      
Sbjct: 291 TPAV--GFGIGEERLML-VLEKQNPELFKNEGI---------DFFITNIG---EGTAQKA 335

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +I   L K G +  +D   +++  QF  AD  G    + +G K +++  + IK    G 
Sbjct: 336 IEIARSLRKQGFEADFDVNQKKLKGQFKKADREGAKYVITLGEKELANGVLNIKRLADGK 395

Query: 426 REDMSLEEV 434
             D+SLE++
Sbjct: 396 TIDLSLEDI 404


>gi|312867053|ref|ZP_07727264.1| histidine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311097535|gb|EFQ55768.1| histidine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 427

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 141/441 (31%), Gaps = 71/441 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDSAKWQYVEGFARKVFARYNYDEIRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYIGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M   +L+    LG+ ++ +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAAQFLK---ELGIDNVTLHLNTLGSPASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     +    +V  SK+  D     +     D+ D  S 
Sbjct: 175 QAYRQALIDYLLPVKDQLSKDSQRRLEENPLRVLDSKEKEDKAAVEQAPSILDYLDEESQ 234

Query: 246 NSIVEQWTAPY----AATSDVHNEKLFDSLPENKRVSARGIE--------VGHIFYFGTK 293
                          A   D +  +  D            IE         G        
Sbjct: 235 AHFDAVRRMLEDLGVAYVIDTNMVRGLDYYNHTIFEFITEIEGNELTVCAGGRYDGLVEY 294

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +  P +A F              +GIG  R++  +     + KGI  P         +  
Sbjct: 295 FGGPATAGFG-------------FGIGVERILLVL-----EKKGIELPIETG-LDAYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        +A   +   L   G     D +G ++ +QF  AD+      + +GS  V  
Sbjct: 336 LG---DEVNEAALSLVQALRIQGFKAERDYLGRKLKAQFKSADVFAAKALITLGSSEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEV 434
            +V +K+  T     ++LE++
Sbjct: 393 GQVTVKNNQTRQEVTVALEKL 413


>gi|78485113|ref|YP_391038.1| seryl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123755256|sp|Q31HK9|SYS_THICR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78363399|gb|ABB41364.1| seryl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 428

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 14/197 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRND 101
            K    +   + +     G  E+ VP L + D    +G+   +  ++ ++      D +D
Sbjct: 170 AKLQRALTQFMLDSHTDAGYEEVYVPFLVNQDSLHGTGQLPKFEADLYKIDKHEEHDTSD 229

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           + +   PT E  +T++FR  I     LP  F      FR E     R   G++R  +F  
Sbjct: 230 RDLYLIPTAEVPVTNLFRDEIIDEDTLPLKFTAHTPCFRSEAGSYGRDTKGLIRQHQFEK 289

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVL 213
            +     + P+ S  +   +      I  +L L    M   +G IG   +     E  + 
Sbjct: 290 VEMVQI-VHPDQSYEALESLTQQAESILQKLELPYRVMSLCTGDIGFSAAKTYDLEVWLP 348

Query: 214 ADTGETQVFCSKDFMDF 230
                 ++    +F DF
Sbjct: 349 GQQAYREISSCSNFEDF 365


>gi|313891838|ref|ZP_07825443.1| serine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313119832|gb|EFR43019.1| serine--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 434

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 19/247 (7%)

Query: 20  IASHKLMLRTGMIHQHSKG------IYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVP 72
            A ++L     M+     G         ++    K    V   + +     G   E+  P
Sbjct: 137 KAHYELGESLKMLDFERAGKVSGARFTFYIDAIAKLERAVYNFMLDLHTVEGTFTEVIPP 196

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +      +G+   + ++M ++     + M   PT E  +T+ F   I     LP  F
Sbjct: 197 YIINESSMQGTGQLPKFAEDMYKV---EGETMYMTPTAEVPLTNYFAGEILDESILPVHF 253

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +   FR E     +   G++R  +F   +   +   PE SK     +     ++   L
Sbjct: 254 TALTPCFRKEAGSAGKDTRGLIRQHQFQKVEMVKY-CKPEDSKDELESLTNEAEKVLQEL 312

Query: 189 GLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            L    +   +G IG   S     E  + A     ++    + +DF     N  F     
Sbjct: 313 NLPYRVVCLCTGDIGFSASKTYDVEVWMPAQNKYREISSCSNCLDFQARRANIRFRRCKG 372

Query: 245 LNSIVEQ 251
                  
Sbjct: 373 AKPEFVH 379


>gi|313672443|ref|YP_004050554.1| seryl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939199|gb|ADR18391.1| seryl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 421

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 12/218 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +     G  E+  P L +A     +G+   + +E+ +     
Sbjct: 164 IYKGLGSRLERALINFMLDTHIAKGYTEIIPPLLVNAKAMTGTGQLPKFEEELFKC---E 220

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
              +   PT E  +T+I+   I  Y  LP  F      FR E     +   G++R  +F 
Sbjct: 221 RDELYLIPTAEVPVTNIYADEIIDYDKLPLNFVSYTPCFRREAGSYGKDVRGLIRQHQFN 280

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----HEFIV 212
             +     + PE S      +  +   I   LGL    ++  SG +G   S     E  +
Sbjct: 281 KVELVKI-VEPERSMEELEILTDNAAEILRLLGLPYRIIKLCSGDLGFSSSITYDIEVWL 339

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                  ++    +F DF        + D         
Sbjct: 340 PGQNCYREISSCSNFKDFQSRRAKIRYRDRNKNVVFPH 377


>gi|154509410|ref|ZP_02045052.1| hypothetical protein ACTODO_01941 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799044|gb|EDN81464.1| hypothetical protein ACTODO_01941 [Actinomyces odontolyticus ATCC
           17982]
          Length = 462

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/441 (15%), Positives = 150/441 (34%), Gaps = 53/441 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+         R  A  + +    +   ++WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKENIKRAWWNAMVRRRADVVGLDSSVILPREVWVASGHVKAFTDPLIECL 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           + + +A       E            S  ++      ++ ++  E R   G++++    +
Sbjct: 95  NCHKRARQDQLIEELAEKKGVEESSLSNADIACPNCGVRGQW-TEPRAFSGLLKTYLGPV 153

Query: 158 KDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            D      L PE ++     +F++Y  +   +           G IG    +E       
Sbjct: 154 DDEAGLHYLRPETAQ----GIFINYANV---MNAARKKPPFGIGQIGKSFRNEITPGNFI 206

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
             T+ F   +   F  P  + ++                    +    E       +   
Sbjct: 207 FRTREFEQMELEFFCEPGTDEEWHQYWIDYRKAWYVDLGIDPENLREYEH---PQEKLSH 263

Query: 277 VSARGIEVGHIFYFG-------------TKYSLPMS-------ATFKGADGKDHY-VQMG 315
            S R +++ + F F              T Y L +          +   + K+ +   + 
Sbjct: 264 YSKRTVDLEYRFGFQGSEWGELEGIANRTDYDLTVHSEASGAKLDYFDPNTKERWTPYVI 323

Query: 316 SYGIGAMR-VVAAVIESSHDGKGII------------WPDSVAPFKISLINIKAHDQVCR 362
               G  R ++A +IE+ H+ +                   +AP K +++ +    ++  
Sbjct: 324 EPSAGLTRSLMAFLIEAYHEDEAPNAKGGVDKRVVLKLDPRLAPVKAAVLPLSRKPELTG 383

Query: 363 DACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              +++   L   G  +V +DD G  +G ++   D +G P  +      + D  V I+ R
Sbjct: 384 P-AQELADELR--GIWNVDYDDAGA-VGRRYRRQDEIGTPFCITYDFDSIEDHAVTIRER 439

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  + L++V +Y   R 
Sbjct: 440 DTMEQVRIPLDKVKSYLIERL 460


>gi|86357454|ref|YP_469346.1| seryl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|123512164|sp|Q2K967|SYS_RHIEC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|86281556|gb|ABC90619.1| seryl-tRNA synthetase (serine-tRNA ligase) protein [Rhizobium etli
           CFN 42]
          Length = 427

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 14/210 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +  A+    +G    + +++ +  D         PT
Sbjct: 176 RALGQFMIDLHTREHGYTEVSSPLMVRAEAVFGTGSLPKFEEDLFKTTD----GRYLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVREEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 291 DAESSIAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREI 350

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  DF     N  +      N+    
Sbjct: 351 SSCSVCGDFQARRMNARYRGKDDKNNKFVH 380


>gi|65316905|ref|ZP_00389864.1| COG0423: Glycyl-tRNA synthetase (class II) [Bacillus anthracis str.
           A2012]
 gi|228917544|ref|ZP_04081089.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228936204|ref|ZP_04099004.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228981598|ref|ZP_04141894.1| Glycyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228988159|ref|ZP_04148257.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124457|ref|ZP_04253644.1| Glycyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229141633|ref|ZP_04270164.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|229158516|ref|ZP_04286576.1| Glycyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|229199064|ref|ZP_04325747.1| Glycyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228584335|gb|EEK42470.1| Glycyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228624952|gb|EEK81719.1| Glycyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228641831|gb|EEK98131.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|228659005|gb|EEL14658.1| Glycyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228771570|gb|EEM20038.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228778083|gb|EEM26354.1| Glycyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228823451|gb|EEM69283.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842111|gb|EEM87213.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 455

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 208 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 250

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 251 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 295

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 296 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 335

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 336 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 391

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 392 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 450

Query: 440 HRFS 443
            +  
Sbjct: 451 KKIQ 454


>gi|163781886|ref|ZP_02176886.1| seryl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883106|gb|EDP76610.1| seryl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 424

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +     G  E+  P L   ++   +G+   + +++ +        +
Sbjct: 170 WGARLERALINFMLDLHRTKGYEEVLPPHLVRPEVLEGTGQLPKFEEDLYKC---ERDEL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++FR  I     LP         +R E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVPLTNLFRGEILKEEELPIYLTAHTPCYRREAGSHGKDIRGIIRQHQFNKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + P+ S     K+      +   LGL    +   +G +G   +     E    +  
Sbjct: 287 VKI-VHPDTSYDELEKLAADAEEVLKLLGLPYRVVELCTGDLGFSAAKTYDLEVWFPSQG 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              ++    +  DF     NT F D    N  V 
Sbjct: 346 KYREISSCSNCEDFQARRMNTRFKDERGKNRFVH 379


>gi|150400469|ref|YP_001324235.1| histidyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|166228578|sp|A6UT01|SYH_META3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150013172|gb|ABR55623.1| histidyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 418

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 148/432 (34%), Gaps = 42/432 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           +    KG   + P   K    +   ++         E++ PT +  +L   ++G  +   
Sbjct: 1   MFNRPKGTRDFAPSEMKKRKIIENKLKSVFMAYNFNEINTPTFEYFELLSKKTG--EDIR 58

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFG 148
           K++    D  ++ M   P   E+ + + R +I   +NLP     +     FR E  P+ G
Sbjct: 59  KQLFVFKDHGNREMGLRP---EITSSVVRFYINELKNLPKPQKLFYFANCFRYEQ-PQAG 114

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSY--------NKMFVSY----------LRIFHRLGL 190
             R REF              +            NK+ + Y            +F   GL
Sbjct: 115 --RYREFWQMGCELLGSKNPIADAEVINLAMDGLNKINMDYEIHIGHLGVLKGVFEEFGL 172

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                  +   +     +E +        +               +    + +  N    
Sbjct: 173 TE-DEELKIRRLIDKEDYENLEKCLIELEENKNIIIKDIIFSVLNSKGTVEEVIGNLKEI 231

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
               P +  +  + E++ + +  N  +   GI  G  +Y G  +       +   +G   
Sbjct: 232 LKNYPKSIEALNNLEEIMEFVKRNNYIINLGIARGLDYYTGMVFE-----VYGKKEGARQ 286

Query: 311 YVQMGSYGIGAMRVVAA---VIESSHDGKGIIWP---DSVAPFKISLINIKAHDQVCRDA 364
               G Y         A    +  ++    I+       V   +I ++ IK   ++ ++ 
Sbjct: 287 VCGGGRYDNLIELFEGAPTPAVGFAYGFDRIMLNIDDFEVEDKRILIVPIKKDKKLLKE- 345

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C  I  +L ++   V  D M  ++      A+ +G    +++G K +++ K+ IK   TG
Sbjct: 346 CLIIADKLREMEKIVEVDLMNRKLNKALNYANTVGISKVIMIGEKELNERKISIKDMETG 405

Query: 425 IREDMSLEEVIN 436
            ++ + LEE+ N
Sbjct: 406 EQKLIDLEELSN 417


>gi|49478811|ref|YP_038935.1| glycyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|59798535|sp|Q6HBZ1|SYG_BACHK RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|49330367|gb|AAT61013.1| glycine--tRNA ligase (glycyl-tRNA synthetase, class II) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 458

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|328754457|gb|EGF68073.1| glycyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 506

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 119/398 (29%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 166 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 219

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 220 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------- 266

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                  G D              Q +       +     N D 
Sbjct: 267 -----------------------GTDEEW----------HQYWIDVRTAWYTDLGINPDN 293

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 294 LRHYEHPKEKLSHYSKRTVDVEYKFGFSGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 351

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 352 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 408

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 409 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 465

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V I+ R T  ++ +S+++V  Y   + 
Sbjct: 466 TVDFDSLEDDAVTIRERDTMAQQRVSIDKVEEYLGGKL 503


>gi|261392091|emb|CAX49588.1| seryl-tRNA synthetase (serine--tRNA ligase; SerRS) [Neisseria
           meningitidis 8013]
          Length = 431

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYETLEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|251783488|ref|YP_002997793.1| histidyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242392120|dbj|BAH82579.1| histidyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 426

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 148/436 (33%), Gaps = 57/436 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D 
Sbjct: 1   MAFQKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    + RS++++         P   Y I   FR E 
Sbjct: 61  VTKEMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R REF       F      +      M  +Y  +F +LG+K + +   S    
Sbjct: 117 RPQAG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSP 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P+   LS +     D    +V  SK+  D     +     D +  
Sbjct: 172 ESRSAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDE 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSA 300
            S    + A  A    ++   + D+                IF F     G+  ++    
Sbjct: 232 ES-QAHFEAVKAMLEALNIPYVIDTNMVRGLDYYNH----TIFEFITSVEGSDLTICAGG 286

Query: 301 TFK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +    G  G       G +G+G  R++  +     + +G+  P       + L  +   
Sbjct: 287 RYDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGLALPIE-TEMDVYLAVLGDG 339

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    ++   + + G     D +G +I +QF  AD     L + +G   V   K  
Sbjct: 340 ---ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAV 396

Query: 418 IKHRLTGIREDMSLEE 433
           IK+  +    ++S E+
Sbjct: 397 IKNNRSRQEVEVSFED 412


>gi|255692612|ref|ZP_05416287.1| glycine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260621671|gb|EEX44542.1| glycine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 513

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 122/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD + K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTADGSMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K     L+    LG              GD S+ + 
Sbjct: 261 MREFEQMEMQFF-VKPGTELDWFKKWKEIRLKWHKALGF-------------GDASYRYH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I       +     +H+   FD  
Sbjct: 307 ----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 SYCEEQLENGESRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|212710614|ref|ZP_03318742.1| hypothetical protein PROVALCAL_01680 [Providencia alcalifaciens DSM
           30120]
 gi|212686695|gb|EEB46223.1| hypothetical protein PROVALCAL_01680 [Providencia alcalifaciens DSM
           30120]
          Length = 425

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 140/434 (32%), Gaps = 40/434 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP   +    + A ++      G  E+  P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTRVWQKIEATLKNILQGYGFSEIRTPIVEQTPLFRRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN++++   P +          H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFNDRNEESLTLRPENTAGCVRAGIEHGLLYNQE-QRLWYLGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLAGPDIDAEVILM---TARWWRALGISE-HVTLELNSIGSLDARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D      +     + S N  I        A    +  E     
Sbjct: 178 RDALVAFLEQHKDKLDEDCKRRMYSNPLRVLDSKNQDIQALLNDAPALFDYLDAESREHF 237

Query: 271 LPENKRVSARGIE--VGHIFYFGTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM-- 322
               K +   GI+  V      G  Y          T  G+ G       G Y       
Sbjct: 238 EGLCKLLDNAGIQYRVNQRLVRGLDYYNRTVFEWVTTALGSQGT--VCAGGRYDGLVEQL 295

Query: 323 --RVVAAVIESSHDGKGIIW-----PDSVAPFKISLINIKA----HDQVCRDACEKIYAR 371
             R   AV  +    + ++      P+  A   ++ + + +      Q      EK+   
Sbjct: 296 GGRATPAVGFAMGMERMVLLVQEVNPEFTADTSVADVYLASFGENSQQAALLIAEKVRDE 355

Query: 372 LSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           L  +             G    Q A AD  G  + +I+G   +++S+V +K   TG +E 
Sbjct: 356 LPTLRLM-----TNHGGGNFKKQLARADKQGAKIALILGEDEINNSQVTLKDLRTGEQET 410

Query: 429 MSLEEVINYASHRF 442
           +S + V +  +   
Sbjct: 411 ISQQLVASRIAALL 424


>gi|218900065|ref|YP_002448476.1| glycyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218541497|gb|ACK93891.1| glycyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 458

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|163783153|ref|ZP_02178147.1| histidyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881487|gb|EDP74997.1| histidyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 405

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 125/422 (29%), Gaps = 40/422 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYG 90
            Q  +G +  L         V   +R    R    E+  P ++ A ++  S G   D   
Sbjct: 5   FQAPRGFHDILGSELLKFRKVTTTVRAILRRYNYEEIITPVVEYAKVFERSIGEATDIVQ 64

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGV 149
           KEM    DR  + +   P     +   +  + K Y   P+   +     FR E RP+ G 
Sbjct: 65  KEMFVFEDRKGRLLALRPEGTAGVVRAYIEN-KLYALRPYHKLFYEGPMFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY---LRIFHRLGLKSIPMRAESGPIGGDL 206
            R R+F    A  F +    +     K+       L I   + L S+  +    P   + 
Sbjct: 122 -RYRQFHQIGAEVFGVAEPHADAELLKLVSDILSELNIPATIELNSLGCKVC-RPAYREA 179

Query: 207 SHEFIV------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             E++         D  + +       +D  + S      +   +             T 
Sbjct: 180 LVEYLHGVGEELCKDCIDRKDRNPLRVLDCKVQSCQLAVREAPKMVDF-LCDECREHYTR 238

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKGADGKDHYVQ 313
                              RG++              G          +   +       
Sbjct: 239 LKTYLAELGVKYRENYNLVRGLDYYTRTVFEAVSDELGAAVVAGGRYDYLVEEFGGPPTP 298

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              + +G  R++  +IE       + +          +I              K+   L 
Sbjct: 299 ALGFAVGVERLML-LIEEPEKDYELYF----------VIPFGN----VHAYALKVADALR 343

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V +      +  Q   A+ LG    VIVG   + +  V +K   TG ++ + +E 
Sbjct: 344 DRGKVVEFSYRKGNLKKQLEFANRLGADYAVIVGEDELREGVVSLKDMRTGEQKKLKVEN 403

Query: 434 VI 435
           ++
Sbjct: 404 IV 405


>gi|30264956|ref|NP_847333.1| glycyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|42784099|ref|NP_981346.1| glycyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|47530451|ref|YP_021800.1| glycyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47566949|ref|ZP_00237666.1| glycyl-tRNA synthetase [Bacillus cereus G9241]
 gi|49187774|ref|YP_031027.1| glycyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|52140610|ref|YP_086219.1| glycyl-tRNA synthetase [Bacillus cereus E33L]
 gi|118480007|ref|YP_897158.1| glycyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|165870894|ref|ZP_02215546.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167634943|ref|ZP_02393261.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639989|ref|ZP_02398257.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170685642|ref|ZP_02876865.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170707043|ref|ZP_02897500.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177652334|ref|ZP_02934837.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190567164|ref|ZP_03020079.1| glycyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196032884|ref|ZP_03100297.1| glycyl-tRNA synthetase [Bacillus cereus W]
 gi|196040501|ref|ZP_03107801.1| glycine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196044021|ref|ZP_03111258.1| glycyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|206976453|ref|ZP_03237360.1| glycyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217962381|ref|YP_002340953.1| glycyl-tRNA synthetase [Bacillus cereus AH187]
 gi|218906113|ref|YP_002453947.1| glycyl-tRNA synthetase [Bacillus cereus AH820]
 gi|222098368|ref|YP_002532426.1| glycyl-tRNA synthetase [Bacillus cereus Q1]
 gi|225866890|ref|YP_002752268.1| glycyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227817684|ref|YP_002817693.1| glycyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228929941|ref|ZP_04092954.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228942077|ref|ZP_04104618.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228948637|ref|ZP_04110915.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228975007|ref|ZP_04135567.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|229187155|ref|ZP_04314301.1| Glycyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229602508|ref|YP_002869159.1| glycine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254687247|ref|ZP_05151104.1| glycyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254725260|ref|ZP_05187043.1| glycyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254735416|ref|ZP_05193124.1| glycyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740683|ref|ZP_05198374.1| glycyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254753055|ref|ZP_05205091.1| glycyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254761397|ref|ZP_05213418.1| glycyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|300117973|ref|ZP_07055730.1| glycyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|59798501|sp|Q632E8|SYG_BACCZ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|59798563|sp|Q72YG8|SYG_BACC1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|59798583|sp|Q81XT3|SYG_BACAN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|30259633|gb|AAP28819.1| glycine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|42740030|gb|AAS43954.1| glycyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|47505599|gb|AAT34275.1| glycyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556267|gb|EAL14601.1| glycyl-tRNA synthetase [Bacillus cereus G9241]
 gi|49181701|gb|AAT57077.1| glycyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|51974079|gb|AAU15629.1| glycine--tRNA ligase (glycyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|118419232|gb|ABK87651.1| glycyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|164713403|gb|EDR18928.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512070|gb|EDR87448.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167529693|gb|EDR92442.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128146|gb|EDS97016.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170670106|gb|EDT20846.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172082340|gb|EDT67406.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190561668|gb|EDV15638.1| glycyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|195994313|gb|EDX58268.1| glycyl-tRNA synthetase [Bacillus cereus W]
 gi|196025357|gb|EDX64027.1| glycyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196028633|gb|EDX67240.1| glycine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|206745377|gb|EDZ56777.1| glycyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217067915|gb|ACJ82165.1| glycyl-tRNA synthetase [Bacillus cereus AH187]
 gi|218535956|gb|ACK88354.1| glycyl-tRNA synthetase [Bacillus cereus AH820]
 gi|221242427|gb|ACM15137.1| glycine--tRNA ligase (glycyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|225789327|gb|ACO29544.1| glycine--tRNA ligase [Bacillus cereus 03BB102]
 gi|227002360|gb|ACP12103.1| glycine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228596324|gb|EEK53998.1| Glycyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228784712|gb|EEM32731.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228810944|gb|EEM57287.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228817593|gb|EEM63677.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228829717|gb|EEM75341.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229266916|gb|ACQ48553.1| glycine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|298724627|gb|EFI65312.1| glycyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|324328794|gb|ADY24054.1| glycyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942679|gb|AEA18575.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 458

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|184154542|ref|YP_001842882.1| seryl-tRNA synthetase [Lactobacillus fermentum IFO 3956]
 gi|238689196|sp|B2GF13|SYS_LACF3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|183225886|dbj|BAG26402.1| seryl-tRNA synthase [Lactobacillus fermentum IFO 3956]
          Length = 432

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 80/214 (37%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++ LG +    +   + +E  + G  E+  P + +A     +G++  + +++ ++  
Sbjct: 163 FVYYVGLGAQLERALYNFMLDEHMKEGYTEVLPPYIVNAHAMYGTGQFPKFKQDVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ F   +     LP     +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYFAGEVIPAEKLPVYVTALTPSFRSEAGSAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +    + S    +KM  +   I  +LGL    +   +  +    S     E 
Sbjct: 280 FNKVEMVKY-TKQDQSWEELDKMTANAENILQKLGLPYHVITLTTSDMSFTASETHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     +V    + +DF     +  + D   
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRLHMQYRDENG 372


>gi|254169125|ref|ZP_04875962.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197621964|gb|EDY34542.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 405

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 136/427 (31%), Gaps = 50/427 (11%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRN 100
             P   +A   V   I       G  E+  P+++  DL+  +SG  +   K+     D+ 
Sbjct: 1   MYPEYMRARRIVFDKICSVARSFGFHEVDTPSVELLDLFRIKSG--EEIVKQTFSFVDKG 58

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            + +   P     ++ +  +     +  P  ++     +R E  P+ G  R REF   +A
Sbjct: 59  GREITLIPELTPSVSRMIAARKDLVK--PVKWFSFPKMWRYEE-PQSG--RLREFYQFNA 113

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI------------GGDLSH 208
             F +    +      +    + I   LGLK   +   S  I              + + 
Sbjct: 114 DIFGVANITADAE---VMALAMEILDSLGLKGKYVMKFSDRILMEELLRSLDIEKIEEAF 170

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
             I   D    + F  +        + ++    +    ++    +             L 
Sbjct: 171 RIIDKKDKIPEERFYEEMLKITREENVDSLISLLKLSGNVDTVLSKFEHFERSEILASLK 230

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA- 327
           D L    + +   + +      G  Y   +      A G+   V  G      + +  A 
Sbjct: 231 DLLKAYGKTATLDLSIVR----GLAYYTGVVFEVHDAKGEFRAVLGGGRYDRVVELFGAQ 286

Query: 328 ------------VIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYARLS 373
                       V+E     +G +WPD        I++I         R    +I   L 
Sbjct: 287 PTPAVGFGMGDAVLELLMRREG-VWPDERIEVDYFIAIIP------GFRKEAIEIAMELR 339

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V  D     IG Q   A  +     +IVG   + + +V +K   +G + ++ +EE
Sbjct: 340 RSGYVVDIDLSERSIGKQLKYAHRINAKYTIIVGE-EIKNGEVALKDMESGEQRNVKIEE 398

Query: 434 VINYASH 440
           +      
Sbjct: 399 LKEVIEK 405


>gi|154488946|ref|ZP_02029795.1| hypothetical protein BIFADO_02255 [Bifidobacterium adolescentis
           L2-32]
 gi|154083083|gb|EDN82128.1| hypothetical protein BIFADO_02255 [Bifidobacterium adolescentis
           L2-32]
          Length = 491

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 155/486 (31%), Gaps = 63/486 (12%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              T    + +    +    +WV SG    +   +  +   N          EE   +  
Sbjct: 54  MVVTRGDVVGVDTSIILPTPVWVASGHVAVFNDPL--VECLNCHKRQRSDKLEESYAEKH 111

Query: 119 RSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNK 176
              +               + +  E R    ++R+    ++D  S   L PE ++  +  
Sbjct: 112 GDKLPENGMADIVCPDCGTRGKWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVD 171

Query: 177 MFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                     +   G+ +         +G    +E         T+ F   +   F  P 
Sbjct: 172 FKNVMTSSRKKPPFGIAN---------MGKSFRNEITPGNFIFRTREFEQMEMEFFVKPG 222

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--- 291
           E+  +                    +  H E   + L    +   R +++ + F F    
Sbjct: 223 EDEAWHQYWIDARTQWYLDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYKFGFQGSD 279

Query: 292 ----------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSH 333
                     T + L   A   G D        G+ +   +     G  R +   +  ++
Sbjct: 280 WGELEGIANRTDFDLSAHAEHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMCFLVDAY 339

Query: 334 DGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           D                +     +AP K +++ +     +     +K+ A L +    + 
Sbjct: 340 DVDEAPNTKGGVDKRTVLHLDPRLAPVKAAVLPLSKKPDLQN-VAQKLAADLRQNEWMID 398

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +E +SL++V +Y + 
Sbjct: 399 YDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQERVSLDKVADYIAE 457

Query: 441 RFSNNR 446
           R    R
Sbjct: 458 RIGEKR 463


>gi|91225138|ref|ZP_01260360.1| histidyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91190081|gb|EAS76352.1| histidyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 422

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 139/429 (32%), Gaps = 32/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRSCIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGINE-HVRLELNSIGSQEDRADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     +  +    +    
Sbjct: 178 RTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYG 318
               +L D+      V+ R +  G  +Y  T +   +  + A      G  +   +   G
Sbjct: 238 AGLCELLDAAGIKYTVNERLV-RGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLG 296

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV 375
                 V   +      + ++  +++    +     + +    +    A  K+  +L + 
Sbjct: 297 GKPTPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQLRES 353

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V     G     QF  AD +G  + +++G   V+D+ V +K    G +E  +  E
Sbjct: 354 VPGVRVMNHFGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLAGGEQETYNQAE 413

Query: 434 VINYASHRF 442
           V    +   
Sbjct: 414 VAEKIAALI 422


>gi|150389940|ref|YP_001319989.1| histidyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149949802|gb|ABR48330.1| histidyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 436

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 151/445 (33%), Gaps = 56/445 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG   + P  Q   + +   ++E     G   +  PTL   + L  +        KE   
Sbjct: 9   KGTKDFFPNEQIIRNGIIKKLQEVFELYGYQPLETPTLYYLEVLASKYAGGAEILKETYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+ ++ +          + +   +      +PF  Y+I   FRD       + R REF
Sbjct: 69  LKDQGERELGLRYDLTIPFSKVIGMNPNLR--MPFKRYEIGKVFRD---GPVKLGRMREF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +           MF++   +F +LGL                    I  +L
Sbjct: 124 IQCDVDVVGVK--SMMAEAELMFMA-TEVFDKLGLDIYLSYNNRKLLSGTLMKLKINKEL 180

Query: 207 SHEFIVLADTGET-----------------QVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           + + I+  D  E                  +V  +   +     + + D+   I+ NS++
Sbjct: 181 ASDVILSLDKVEKIGIEGVKKELLEKNLQPEVVENIIELLNNKEAASIDYYKGIASNSLM 240

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH-----IFYFGTKYSLPMSA--TF 302
           ++        +D  +     S  +     ARG+E+       IF      +  M A   +
Sbjct: 241 QEGIQELEELNDYLDAMGIGSKVKYNPFLARGLEIYTGTVYEIFLKDGSITSSMGAGGRY 300

Query: 303 KGADGKDHYVQMGSYGIGAM---RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
               GK    ++G   +G      V+   +    D +        +   + +I +    +
Sbjct: 301 DDIIGKFIQNEVGYPAVGISFGLDVIYTALSMKRDNEL------ESNLDVYIIPLGTEAE 354

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             + ACE     L   G  V  D    ++  +   A+    P  +I+G   V   ++++K
Sbjct: 355 ALKMACE-----LRGQGIKVDIDMTERKLKKRLDYANKEKIPYVLILGEDEVKSQRIKMK 409

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
              +G  E+M + E+ N    R  +
Sbjct: 410 DMKSGTEEEMKISEIGNNVLRRIQS 434


>gi|227514189|ref|ZP_03944238.1| serine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|260662603|ref|ZP_05863498.1| seryl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|227087452|gb|EEI22764.1| serine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|260553294|gb|EEX26237.1| seryl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|299782726|gb|ADJ40724.1| Seryl-tRNA synthetase [Lactobacillus fermentum CECT 5716]
          Length = 432

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 80/214 (37%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++ LG +    +   + +E  + G  E+  P + +A     +G++  + +++ ++  
Sbjct: 163 FVYYVGLGAQLERALYNFMLDEHMKEGYTEVLPPYIVNAHAMYGTGQFPKFKQDVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ F   +     LP     +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYFAGEVIPAEKLPVYVTALTPSFRSEAGSAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +    + S    +KM  +   I  +LGL    +   +  +    S     E 
Sbjct: 280 FNKVEMVKY-TKQDQSWEELDKMTANAENILQKLGLPYHVITLTTSDMSFTASETHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + A     +V    + +DF     +  + D   
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRLHMQYRDENG 372


>gi|197119467|ref|YP_002139894.1| histidyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|197088827|gb|ACH40098.1| histidyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 416

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 132/419 (31%), Gaps = 43/419 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP   +    + A  R      G  E+ +P L+  +L+  S     D   KEM 
Sbjct: 7   KGFNDILPGEVEKWQYIEATARRVFELYGLSEIRIPILEKTELFCRSIGDATDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ +  +   P     +   +  H     +     Y +   FR E RP+ G  R R+
Sbjct: 67  SFVDKGENKVTMRPEGTASVMRAYVEHKMHALDPVARLYYMGPMFRYE-RPQKG--RYRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F    A    +           M       F+ LGL    ++  S       P+  D   
Sbjct: 124 FHQIGAEITGVAAPSVDAQVLTML---THFFNELGLTEPSLQINSLGCPCCRPLYRDALK 180

Query: 209 EF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +F    +    E      +      +  ++    +       +  +     +       K
Sbjct: 181 KFLLDRIDSLCEDCKRRYESNPLRALDCKSAGCQEATQGAPSMLDYLCGECSAHFDQTRK 240

Query: 267 LF---DSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG---ADGKDHYVQ 313
                D+     +   RG++              G + ++     + G     G      
Sbjct: 241 YLELADTPYAINKRMVRGLDYYTRTTFEMVTTLLGAQSAVAAGGRYDGLIAEIGGPQIPG 300

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +G + +G  RV   + E     +    PD         + I A  +       ++ + L 
Sbjct: 301 IG-FAMGVERVALLLAEKEFSRR----PD---------LFIAAMGEEAHAEAFRLMSALQ 346

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G  V  D  G+ + SQ   AD       +I+G   +S     +K+   G + ++ L+
Sbjct: 347 RGGAAVEIDYEGKSLKSQMRRADKFNSRFTLIIGGDELSRGTAPLKNMDGGTQSEVPLD 405


>gi|50842433|ref|YP_055660.1| glycyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|50840035|gb|AAT82702.1| glycyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|313764544|gb|EFS35908.1| glycyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313772417|gb|EFS38383.1| glycyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313792233|gb|EFS40334.1| glycyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801818|gb|EFS43052.1| glycyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313807427|gb|EFS45914.1| glycyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313809935|gb|EFS47656.1| glycyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313813027|gb|EFS50741.1| glycyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
 gi|313816086|gb|EFS53800.1| glycyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313818473|gb|EFS56187.1| glycyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820236|gb|EFS57950.1| glycyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822955|gb|EFS60669.1| glycyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825117|gb|EFS62831.1| glycyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|313827686|gb|EFS65400.1| glycyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|313830266|gb|EFS67980.1| glycyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313834067|gb|EFS71781.1| glycyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314915540|gb|EFS79371.1| glycyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918337|gb|EFS82168.1| glycyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314919992|gb|EFS83823.1| glycyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314925297|gb|EFS89128.1| glycyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314932005|gb|EFS95836.1| glycyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955874|gb|EFT00274.1| glycyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958355|gb|EFT02458.1| glycyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314960090|gb|EFT04192.1| glycyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314962891|gb|EFT06991.1| glycyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|314968031|gb|EFT12130.1| glycyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
 gi|314973272|gb|EFT17368.1| glycyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314975947|gb|EFT20042.1| glycyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314978296|gb|EFT22390.1| glycyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314984034|gb|EFT28126.1| glycyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|314987797|gb|EFT31888.1| glycyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314990019|gb|EFT34110.1| glycyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315078106|gb|EFT50157.1| glycyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|315080736|gb|EFT52712.1| glycyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
 gi|315084406|gb|EFT56382.1| glycyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
 gi|315085746|gb|EFT57722.1| glycyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088836|gb|EFT60812.1| glycyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315096185|gb|EFT68161.1| glycyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|315098446|gb|EFT70422.1| glycyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
 gi|315101196|gb|EFT73172.1| glycyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315105473|gb|EFT77449.1| glycyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315108418|gb|EFT80394.1| glycyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327326101|gb|EGE67891.1| glycine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327332028|gb|EGE73765.1| glycine--tRNA ligase [Propionibacterium acnes HL096PA3]
 gi|327443231|gb|EGE89885.1| glycyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
 gi|327446016|gb|EGE92670.1| glycyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448005|gb|EGE94659.1| glycyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|327450871|gb|EGE97525.1| glycyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327453052|gb|EGE99706.1| glycyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
 gi|327453781|gb|EGF00436.1| glycyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753558|gb|EGF67174.1| glycyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328754290|gb|EGF67906.1| glycyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328760397|gb|EGF73965.1| glycine--tRNA ligase [Propionibacterium acnes HL099PA1]
 gi|332675345|gb|AEE72161.1| glycine--tRNA ligase [Propionibacterium acnes 266]
          Length = 506

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 119/398 (29%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 166 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 219

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 220 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------- 266

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                  G D              Q +       +     N D 
Sbjct: 267 -----------------------GTDEEW----------HQYWIDVRTAWYTDLGINPDN 293

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 294 LRHYEHPKEKLSHYSKRTVDVEYKFGFSGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 351

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 352 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 408

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 409 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 465

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V I+ R T  ++ +S+++V  Y   + 
Sbjct: 466 TVDFDSLEDDAVTIRERDTMAQQRVSIDKVEEYLGGKL 503


>gi|28209979|ref|NP_780923.1| glycyl-tRNA synthetase [Clostridium tetani E88]
 gi|59798585|sp|Q899G6|SYG_CLOTE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|28202414|gb|AAO34860.1| glycyl-tRNA synthetase [Clostridium tetani E88]
          Length = 463

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 171/469 (36%), Gaps = 79/469 (16%)

Query: 30  GMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           G I   S+   G+   + + PLG +  +NV     ++  +     + +    L + ++WV
Sbjct: 18  GFIFPGSEIYGGLANSWDYGPLGVEFKNNVKKAWWKKFVQESPYNVGIDAAILMNREVWV 77

Query: 82  ESGRY-------------------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            SG                     D   ++ ++  D N      G ++E++   I +++I
Sbjct: 78  ASGHVGGFSDPLMDCKECKARCRADKLIEDYMQDKDEN-FESADGWSNEQLKDFIDKNNI 136

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS-FDLTPEGSKHSYNKMFVSY 181
              +     F  +        R    + ++ + + +DA S   L PE ++  +     + 
Sbjct: 137 ACPKCGEHNFTDV--------RKFNLMFKTFQGVTEDAQSEIFLRPETAQGIFVNFKNAI 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        M      IG    +E      T  T+ F   +   F  P  + ++ +
Sbjct: 189 RT-------TRRKMPFGMAQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFE 241

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG---------- 291
                S     +   A  +    E   + L    +     +++ ++F FG          
Sbjct: 242 YWRDYSWNFLLSLGLAKDNLRIREHAKEELAFYSKA---TVDIEYLFPFGWGELWGIADR 298

Query: 292 TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI----- 338
           T Y L       G D         + +        +GA RV  A +  ++D + +     
Sbjct: 299 TDYDLKQHMNHSGKDLTYLDPETNEKYLPYCIEPSLGADRVALAFLVDAYDEEELDGGDS 358

Query: 339 ----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   ++APFK +++ +       +D   ++Y+ LSK   +V +D+ G  IG ++  
Sbjct: 359 RTVLRLHPALAPFKAAILPLTKK---LKDKSLEVYSMLSKY-FNVDYDEAG-TIGKRYRR 413

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D +G P  + +    + D+ V I+ R +  +  ++++E++ Y S +  
Sbjct: 414 EDEIGTPYCITIDYDTLEDNTVTIRDRDSMDQIRINIDELVKYISEKVE 462


>gi|325204646|gb|ADZ00100.1| seryl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 431

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYETLEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|229015418|ref|ZP_04172422.1| Seryl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229021624|ref|ZP_04178212.1| Seryl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228739670|gb|EEL90078.1| Seryl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228745876|gb|EEL95874.1| Seryl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 424

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I S   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILSKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|323340840|ref|ZP_08081092.1| histidine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323091963|gb|EFZ34583.1| histidine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 435

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 140/439 (31%), Gaps = 54/439 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP   +    +    R    +    EM  P  ++ +++   SG   D 
Sbjct: 11  MKYQRPKGTADILPGDSEKWQFIEKKARALFKKFRYQEMRTPIFENFEVFSRTSGETSDI 70

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P         +            PF  Y I   FR E RP+
Sbjct: 71  VTKEMYDFFDKGDRHVTLRPEGTAGFVRSYVENKLYGPEIQKPFKTYYIGPMFRYE-RPQ 129

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF      +F +           M +    +    GL S+ +   +       
Sbjct: 130 AG--RFREFHQIGVEAFGVDNPTLDVEVIAMAI---ELLKSFGLNSLKLALNTLGDNESR 184

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS +          +V  SKD  D  I        D ++ ++ 
Sbjct: 185 AAYRQALIDYLEPFEAELSDDSKERLHKNPLRVLDSKDEGDQKIVEGAPSILDYLTDDAK 244

Query: 249 VEQWT---------APYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLP 297
               T           Y   S++     + +    + +S   +  G       G +Y+  
Sbjct: 245 KHFETVKSLLDDLGIEYEIDSNMVRGLDYYNHTIFEIMSDSKVFSGKWTTVCAGGRYN-- 302

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                    G      +G + +G  R++  +I  + +    I  D      + ++ I   
Sbjct: 303 ---GLVEQLGGPETPGIG-FALGVERLL--LILEAEEDAFDIEND----LDVYVVGIG-- 350

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       KI   L   G     D +  +  +QF  A  L     + +G   +++ K  
Sbjct: 351 -ESTNAETLKIAMSLRSQGFSADRDYLSRKPKAQFKTASKLDAKYTLTIGETELAEGKAN 409

Query: 418 IKHRLTGIREDMSLEEVIN 436
           +K   TG    +SL +V  
Sbjct: 410 LKKMETGEEISVSLNDVYE 428


>gi|300088460|ref|YP_003758982.1| histidyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528193|gb|ADJ26661.1| histidyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 418

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 138/438 (31%), Gaps = 51/438 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  +G    LP  Q     V         R G   +  PT + A L+V +     D 
Sbjct: 1   MDYQSPRGTQDILPEEQAWWAYVQDRAVGIAARYGYSRIDTPTFEDARLFVRTVGEETDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            GKEM   ADR    +   P     +   +  H    R  P   + +   FR + RP+ G
Sbjct: 61  VGKEMYTFADRGGSDLTLRPEGTAPVCRAYIQHGMGSRPKPVKLFYLASIFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLS 207
             R RE      + F+L  +G   +  ++       +  LGL ++P++  S  IG  D  
Sbjct: 120 --RYREHHQ---FGFELIGDGDAAADAEVIDLAWNFYRELGLSTLPVQLNS--IGCPDCR 172

Query: 208 HEF-IVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           H +   L +   T +     D       +     D        V       A        
Sbjct: 173 HSYLAALREYYATDIEARCADCRVRYEKNPLRLLDCKRPECGAVADGAPHSADYLCDDCR 232

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F+ L +         E+ H    G  Y               +      G Y      
Sbjct: 233 THFERLRDLLAAVGIPFEINHRLVRGLDYYRRTVFEIQPLEEGAQSTIGGGGRYD----- 287

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC--------------RDACE--- 366
               +IE            +    ++ ++N+K  +                  DA     
Sbjct: 288 ---GLIEQLGGEPTPAVGFATGIERV-ILNLKRQNIAVPGLPAPRFFLAWLGADAATPAF 343

Query: 367 KIYARLSKVGCDVFWDDMGEQIG-----SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + ARL + G  V         G     +Q  +A  +G    +I+G   +++ +V ++  
Sbjct: 344 ALGARLRRAGLTV-----NWSPGPRSLKAQLRLASSMGAAYTLILGENELAEGRVVLRDM 398

Query: 422 LTGIREDMSLEEVINYAS 439
               +  +SL+ +    +
Sbjct: 399 AGSEQRSLSLDGLAEALA 416


>gi|269965171|ref|ZP_06179305.1| histidyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269830157|gb|EEZ84384.1| histidyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 422

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 139/429 (32%), Gaps = 32/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRSCIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGINE-HVRLELNSIGSQEDRADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     +  +    +    
Sbjct: 178 RTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYG 318
               +L D+      V+ R +  G  +Y  T +   +  + A      G  +   +   G
Sbjct: 238 AGLCELLDAAGIKYTVNERLV-RGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLG 296

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV 375
                 V   +      + ++  +++    +     + +    +    A  K+  +L + 
Sbjct: 297 GKPTPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQLRES 353

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V     G     QF  AD +G  L +++G   V+D+ V +K    G +E  +  E
Sbjct: 354 VPGVRVMNHFGGGNFKKQFKRADKVGAVLALVLGENEVADNTVVLKDLAGGEQETYNQAE 413

Query: 434 VINYASHRF 442
           V    +   
Sbjct: 414 VAEKIAALI 422


>gi|166077826|gb|ABY81007.1| glutamyl-prolyl tRNA synthetase [Paramysis bacescoi]
          Length = 145

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K   V   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPTAPDKKQXVYQNSWGMT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   +       A E++   L +       D      
Sbjct: 81  KGLVLPPRVASIHCIIMPVGITAKTTDEEKLALIKAAEQLQKELVEGDVRAECDLRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|262305789|gb|ACY45487.1| glu- + pro-tRNA synthetase [Skogsbergia lerneri]
          Length = 134

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           + RGI+ G   + G  +S      F   +  +  +    S+G+ + R +  +I    D +
Sbjct: 15  TGRGIQGGTSHHLGQNFSKMFEIVFDDPETSEKRFAFQNSWGL-STRSIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++         + V     D C++   +L + G  V+ D       
Sbjct: 74  GLVLPPRVAQIQVVIVPCGITANMKEDVKNSLEDKCKEYXNKLREAGVKVYGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|254412359|ref|ZP_05026133.1| histidyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196180669|gb|EDX75659.1| histidyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 462

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 88/486 (18%), Positives = 165/486 (33%), Gaps = 92/486 (18%)

Query: 26  MLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           M +   I      G   +LP  ++    +   IR+   R G   +  P ++  ++    G
Sbjct: 1   MAKADKINFSCPSGFPEFLPGEKRLEMYLIDTIRQVFERYGFTPIETPAVERLEVLQAKG 60

Query: 85  RYDSYGKEM-------LRLADRNDKAMIYGPTHEE--------VMTDIFRSHIKSYRNLP 129
              + G  +       L    + +K        EE        V    + +   +    P
Sbjct: 61  ---NQGDNIIYGLQPILPPNRQAEKEQAGESGSEERALKFDQTVPLAAYIARHLNELQFP 117

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRL 188
           F  YQI + FR E R + G  R R+F   D              Y+    + +  IF  +
Sbjct: 118 FARYQIDVVFRGE-RAKAG--RYRQFRQCDIDVVGRNKLSLL--YDAQIPAIIAEIFTAI 172

Query: 189 GLKSIPMRAESGP--------IGGDLSHEFIVLA------DTGETQVFCS---------- 224
            +    +R  +          IG D S     +         GET+V  +          
Sbjct: 173 NIGDFLIRINNRKVLSGFFESIGLDESKIMPSIRIVDAAEKIGETKVKKALLAEGLSDEQ 232

Query: 225 ----------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                     +  +D  +   N   +D      +           + V N  + D +   
Sbjct: 233 VEQILTFTKIQGSVDEVLAQLNAMLEDKPDAQVLKTGIAELETVITGVRNLGVSDRVFCI 292

Query: 275 KRVSARGIE-----------VGH----IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
               ARG++           VGH        G +Y   +        G        S G+
Sbjct: 293 DLSIARGLDYYTGTVYETTLVGHEALGSICSGGRYEELVGMFV----GDKMPGVGISIGL 348

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R+++ +I+      GI+   S  P ++ ++N+++          ++  +L + G   
Sbjct: 349 --TRLMSRLIQ-----AGILESFSSTPAQVMVVNMQSD---LMPLYLEVSQKLRQAGIST 398

Query: 380 F--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              +D+    +G Q   AD  G PL VI+GS+  +  K  +K+  TG +  +++E++ N 
Sbjct: 399 ITSFDER--SVGKQLQQADKRGIPLCVIIGSEEAAAQKCGLKNMRTGEQIAVNIEQLANE 456

Query: 438 ASHRFS 443
            S + +
Sbjct: 457 VSKQLA 462


>gi|227549168|ref|ZP_03979217.1| histidyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078728|gb|EEI16691.1| histidyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 427

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 129/429 (30%), Gaps = 56/429 (13%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V      +    G   + +P  +   L+        D   KE
Sbjct: 12  APKGVPDYVPPASATFIAVRDEFARQARLAGYQHIELPVFEDTTLFARGVGESTDVVSKE 71

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR D+++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 72  MYTFADRGDRSVTLRPEGTAGVMRAVIEHNLDRGYLPVKLNYYGPFFRYE-RPQAG--RY 128

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +     R +  +GL    +   S       P   + 
Sbjct: 129 RQLQQVGVEAIGVDDPLLDAEIIALAD---RCYRAVGLTGFRLELTSLGDNTCRPAYREK 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +F+   D  E     ++      +  +  +   + +   ++    +  A         
Sbjct: 186 LQKFLFSLDLDEETRRRAEINPLRVLDDKRPEVKAMTADAPLMIDHLSDEARAHFDTVTA 245

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
             D++  +  ++ R             E  H    G +  +     + G  A      + 
Sbjct: 246 TLDAMGVDYVINPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAQIGGQDLS 304

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              +G+G  R V A+        G+         ++ +  +   ++  +     +   L 
Sbjct: 305 GIGFGLGVDRTVLALEAEGVTLDGVE-------RRVDVFGVAMGEEASKRMSL-LIDDLR 356

Query: 374 KVGCDVFWDD--MG--------EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             G          G        ++ G++FA          +++G   +  S+V +K+   
Sbjct: 357 AAGISADMSYGGRGLKGAMKGADRAGAKFA----------LVLGDNELEASEVAVKNLAE 406

Query: 424 GIREDMSLE 432
             +  ++L+
Sbjct: 407 HSQTSVALD 415


>gi|218661766|ref|ZP_03517696.1| seryl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 409

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +  A+    +G    + +++ +  D         PT
Sbjct: 166 RALGQFMIDLHTREHGYTEVSSPLMVRAEAVFGTGSLPKFEEDLFKTTD----GRYLIPT 221

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 222 AEVTLTNLVREEILDQEELPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 280

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             E +   + +M      +  RLGL    M   +G +G
Sbjct: 281 DAESAIAEHERMTACAEEVLKRLGLHFRTMTLCTGDMG 318


>gi|81429415|ref|YP_396416.1| seryl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123563655|sp|Q38UM4|SYS_LACSS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78611058|emb|CAI56111.1| Seryl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 424

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 78/220 (35%), Gaps = 10/220 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    V   + ++  + G  EM  P L + +    +G++  + +++  + +
Sbjct: 163 FVYYKGAGARLERAVYNFMLDQHAKEGYEEMITPYLVNGESMFGTGQFPKFTEDVYTMTN 222

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
              + M   PT E  +T+ +R  I     LP  F  +   FR E     R   G++R  +
Sbjct: 223 E-GEPMTLIPTAEVPLTNFYRDEILDGAQLPIYFTALSPAFRSEAGSAGRDTRGLIRMHQ 281

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE S +   KM      I   L L    +   +G      +     E 
Sbjct: 282 FNKVEMVKF-TKPEESFNELEKMTADAENILKALNLPYHVITLATGDASFTSAKTYDIEV 340

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            + A     ++    D  DF        + D     ++V 
Sbjct: 341 WLPAQNTYREISSCSDCTDFQARRAQIRYRDEDGHVNLVH 380


>gi|182414470|ref|YP_001819536.1| histidyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|229558700|sp|B1ZUW6|SYH_OPITP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|177841684|gb|ACB75936.1| histidyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 437

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 132/448 (29%), Gaps = 53/448 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGK 91
            Q   G   + P      +++  + R+     G  E   P L+  +L+  +SG  D    
Sbjct: 4   FQSLPGFREFYPDALARRNHIFRLWRQTAVAFGFAEYDAPVLEPLELYKTKSG--DEIEA 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           ++    D+  + +   P     +  +  +   + +  P  ++ I   +R E R + G  R
Sbjct: 62  QLFSFTDKGGREVALRPEMTPTVCRMVGAKANALKR-PIKWFSIAEYYRYE-RAQKG--R 117

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHE 209
            R F   +A  F    E    +  ++     +     GL      +R     +      E
Sbjct: 118 ERAFFQFNADLF---AEPGPEAEIELIALLTQCLKAFGLTEQDFYIRLSDRNLWF-FYLE 173

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN----- 264
            + L +     V  + D  +         + +      +  +                  
Sbjct: 174 ALGLDEPRIRAVLSAVDKFEKVGDDAFKPYAEQFGPLDLALKQRVLEFLQIKTLASLEQT 233

Query: 265 ----------------EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                            KL D L          +++G +   G  Y            G+
Sbjct: 234 LAPLGGEKLAARLGDWRKLLDGLAAMGLSPFIEVDLGVVR--GLAYYTGFVFEAFDRKGE 291

Query: 309 DHYVQMGSYGIGAMRVVAA-------------VIESSHDGKGIIWPDSVAPFKISLINIK 355
              +  G      ++ +                +    D +G++ P  V    +  + I 
Sbjct: 292 LRAIAGGGRYNDLVKKLGGPDLPAVGFAIGDVTLGLLLDARGLM-PAFVQASDVYCV-IG 349

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      +     L   G  V +       G QF +A   G  L +I G   ++ + 
Sbjct: 350 GAAERQAAFAD--VNALRAAGFKVDYPLKDVPFGKQFKLAADSGAKLALIYGPDELAKNV 407

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V+++   T    D+  E+V       FS
Sbjct: 408 VKLRDLTTRTETDVPREQVQAMVRDFFS 435


>gi|238785322|ref|ZP_04629311.1| Histidyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238713775|gb|EEQ05798.1| Histidyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 433

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 136/448 (30%), Gaps = 75/448 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + +I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 15  QAIRGMNDYLPADTAIWQRIESILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 74

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 75  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 130

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG        
Sbjct: 131 YRQFHQLGAEVFGLQGPDIDAE---LILLTARWWRALGISE-HVQLELNSIGS-----LD 181

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD  E  V   +  ++                    +                  D  
Sbjct: 182 ARADYREALVTFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQLLNDAPKLSDYLDEE 241

Query: 272 PENK------------------RVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
            +                        RG++     +F       G + ++     + G  
Sbjct: 242 SKQHFAGLCELLDQASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLV 301

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G+        + +G  R+V  V   + D +        A   + +I+   + Q   
Sbjct: 302 EQLGGRATPAV--GFAMGLERLVLLVQAVNADFQVP------ATVDVYVISSGQNTQS-- 351

Query: 363 DACEKIYARLSKV-----------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            A   +   L              G +V           QF  AD  G  + +++G   V
Sbjct: 352 -AAMLLAESLRDAMPTLKLMTNYGGGNVK---------KQFTRADKWGASVALMLGESEV 401

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  +V +K    G +E ++  +V    +
Sbjct: 402 AADQVVVKDLRNGEQETLAQADVAARLA 429


>gi|213028507|ref|ZP_03342954.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 73

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +  
Sbjct: 1   MRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKT 60

Query: 432 EEVINYASHRFS 443
            ++++Y      
Sbjct: 61  GDIVDYLVKAIK 72


>gi|167767122|ref|ZP_02439175.1| hypothetical protein CLOSS21_01640 [Clostridium sp. SS2/1]
 gi|167711097|gb|EDS21676.1| hypothetical protein CLOSS21_01640 [Clostridium sp. SS2/1]
 gi|291559549|emb|CBL38349.1| histidyl-tRNA synthetase [butyrate-producing bacterium SSC/2]
          Length = 414

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/436 (14%), Positives = 132/436 (30%), Gaps = 49/436 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI Q  +G   W          +  I ++        E+  P  +  +L+        D 
Sbjct: 1   MITQAPRGTKDWFGKDMDQRTYLENIFKDLCASYNIHEIITPVFEHTELFQRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         +  +  +    P   + I   FR E +P+ G
Sbjct: 61  VQKEMYTFEDKGHRSISLKPEGTAGAIRAYLQNGLANEPQPIKMFYITPAFRYE-KPQSG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+               ++     +  ++++   ++GLK   +   S  IG +   
Sbjct: 120 --RLRQHHQFGVEFVGAESPLAEVELITLVSTFIK---KIGLKDAKLHINS--IGCE--- 169

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 +  +  +   K+  +   P+     +         +                  
Sbjct: 170 --NCRKEYNKALLAYLKEHEEHLCPTCRERMEKNPLRVIDCKVPECKEIVKDAPRTIDYL 227

Query: 269 DSLPENKRVSARGI--------EVGHIFYFGTKYSLPMSATFKGADG------------- 307
           D   +      + +        EV      G  Y       F   DG             
Sbjct: 228 DDECKAHFEELKSLLDALNIPYEVDTEIVRGLDYYTKTVFEFVNEDGFTLCGGGRYDNLV 287

Query: 308 ----KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                   +    +G+G  R++  + E   D      P +     I L  +    Q  + 
Sbjct: 288 HEIDGKVSMPSVGFGMGVERILYFLEEEKVD-----LPCT---RDIDLY-VGILGQEAKA 338

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L   G  V  D +G  + +Q   A+ L     +I+G   ++ ++  +K+  T
Sbjct: 339 KAYQIVVDLRHQGFVVETDYLGRSVKAQMKYANKLNAKNTIIIGDDELAKNEGNVKNMET 398

Query: 424 GIREDMSLEEVINYAS 439
                +SL+++ +   
Sbjct: 399 REVTTISLDKIADCLK 414


>gi|73670890|ref|YP_306905.1| histidyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|72398052|gb|AAZ72325.1| histidyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 409

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 144/419 (34%), Gaps = 32/419 (7%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
            +G   +LP        V +++R+   + G  E+  PT +  DL+  +SG  +    E+ 
Sbjct: 6   PRGTRDFLPADTARRRYVESVMRDVARKWGYSEIITPTFEHLDLFTLKSG--EGIIGELY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + M   P     +  ++ + ++     P   +  +  FR E RP+ G  R RE
Sbjct: 64  NFTDKGGREMTLRPELTAPVMRLYINELQP-FPKPLKLFYFENCFRYE-RPQKG--RFRE 119

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-----RLGLKSIPMRAESGPIGGDLSHE 209
           F              S      +  + L+        +LG  ++     SG     +S +
Sbjct: 120 FWQFGVELIGSGKPDSDAEVIALADAMLKAAGVKGDMKLGNLAVIRTLLSGLEPEIVS-K 178

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            + L D  E   +   + +   I +E     D+  L  +  +   P       +  +L  
Sbjct: 179 VMRLVDKKE---YAGLEALLEEIGAEEQLKSDLFHLIKLEGKRILPEVIKIVGNIPELVS 235

Query: 270 SLPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                K + A G++    F    G  Y   M                G      +++   
Sbjct: 236 FEKTLKLLDAYGVDYSLDFGIARGLDYYTGMVFEVYAEGLGAQKQVCGGGSYQLIKLFGG 295

Query: 328 VIESSHDGKGIIWPDSV--------APFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
             +    G GI +   +        AP  + LI+             K+      V   V
Sbjct: 296 G-DVPSTGFGIGFDRIMEICPLTPPAPKTLMLISKPDLHLKAIGFANKLR---KYVPVHV 351

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                  +   Q + A+ +     VIVG K +   K+ ++  ++G +E ++LEE+I   
Sbjct: 352 DLMQRNFKA--QLSYANTINADYVVIVGEKELEVGKLTLRDMVSGEQELLTLEEIIEKV 408


>gi|113461218|ref|YP_719287.1| seryl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123132161|sp|Q0I471|SYS_HAES1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|112823261|gb|ABI25350.1| seryl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 429

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 14  NPRDAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTG 65
              D E+  H  +     G+         G    +  GQ A     +   + +    + G
Sbjct: 131 KKFDFEVKDHVALGEILGGLDFAAGVKLSGARFAVIKGQIARMHRALAQFMLDLHTEQHG 190

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E  VP L +      +G+   +G+E+  +    N++     PT E  +T++ R  I  
Sbjct: 191 YTEAYVPYLVNHATLYGTGQLPKFGEELFHIKPLENEQTYALIPTAEVPVTNLVRDEIID 250

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 251 EADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VEPEKSMEALEELTNQ 309

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   L L    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 310 AEKVLQLLNLPYRKVLLCTGDMGFGATKTYDLEVWIPAQNTYREISSCSNMWDF 363


>gi|284030420|ref|YP_003380351.1| glycyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283809713|gb|ADB31552.1| glycyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 461

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 143/447 (31%), Gaps = 65/447 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV          +    + +    +    +W  SG    +      L 
Sbjct: 33  WDYGPLGVELKNNVRNQWWRAMVTSRDDVVGLDSSVILPTKVWEASGHLSEFVD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-- 155
           +           H+    D  R      +N      Q+          +      R F  
Sbjct: 90  E-------CQSCHKRFRDDHLREDYARRKNKNADEVQLAEIACPNCGNKATFTEPRMFNG 142

Query: 156 LMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           L+K       + EG       +   +FV++  +   +G            +G    +E  
Sbjct: 143 LLKTYLGPVESEEGLHYLRPETAQGIFVNFANV---MGTARKKPPFGIAQVGKSFRNEIT 199

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T+ F   +   F +P  + D+ +              Y       +   F   
Sbjct: 200 PGNFIFRTREFEQMEMEFFVVPGSDEDWHEYWLKAR-----WDWYVGLGLNPDNMRFYEH 254

Query: 272 PENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GK 308
           P+ K    S R +++ + F FG             T + L   +   GAD        G+
Sbjct: 255 PQEKLSHYSKRTVDIEYKFNFGGKEFDELEGIANRTDFDLSTHSKHSGADLSYFDQEKGE 314

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIK 355
                +     G  R V A +  ++                 + +   +AP K +++ + 
Sbjct: 315 RWTPYVIEPAAGLTRNVLAFLLDAYTEDEAPNAKGGVDKRTVLRFDPRLAPVKAAVLPL- 373

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + +       + + A L +   +V +DD G  IG ++   D +G P  + V    + D  
Sbjct: 374 SRNADLSPKAKDLAAELRQSW-NVDFDDAGA-IGRRYRRQDEIGTPYCITVDFDTLEDHA 431

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V I+ R +  +E ++L EV  Y + R 
Sbjct: 432 VTIRERDSMKQERVALTEVTGYLAQRL 458


>gi|269987005|gb|EEZ93280.1| histidyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 410

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/432 (14%), Positives = 124/432 (28%), Gaps = 42/432 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           MI +  KG+  ++ +           IR+     G   +  P+ +   L+  +SG     
Sbjct: 1   MIDRV-KGVRDFIGITAVLRQQALESIRKSYELFGFEPIETPSFEYLSLFTNKSG--PEI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE--LRPRF 147
             ++    D+  + +   P  E  ++ +           P   Y I   +R E   + R+
Sbjct: 58  ESQLYSFEDKKGEKLALRP--EHTISKLRVVSGNKSLVFPLRAYSIGNVWRYEDTKKGRW 115

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
                REF+  D   F                  ++   RLG+++  +   +  I   L 
Sbjct: 116 -----REFIQADIDIFGSADIKYDSEIIACIDFAIK---RLGIENYKINVSNRKILTSLM 167

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               V  +     +          +        ++I      +                 
Sbjct: 168 ESLKVEVEKIVQVLREIDKVHKVGLDEVIKRISELIGETKAEKVRDYLNGKEIPGIEGIK 227

Query: 268 FDSLPENKRVSARGIE---VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 +      GIE          G  Y       F+  +G+   V +   G      
Sbjct: 228 DVEYLISDLKKNYGIEGVYFDRSLVRGQDYYDGSIFEFEFTEGELKGVVLAGGGRYDK-- 285

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKIS--LINIKAHDQVCRDAC----------EKIYARL 372
               I    D    I   ++  F +   ++     ++  +  C           KI A L
Sbjct: 286 ----ISMKFDSDFPISGGAIG-FDVIMEVLVSNYKNKFYKTLCVLSVDDLETSRKIAASL 340

Query: 373 SKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            K G   D+  +D     G      +       +IVG + + D+ V ++   +       
Sbjct: 341 RKEGLVTDIILEDTPLSKG--LNYCNSKKIKYAIIVGKRDLKDNLVTVRDLESKREMKFK 398

Query: 431 LEEVINYASHRF 442
           L+ ++    +  
Sbjct: 399 LDSLVEEIKNLI 410


>gi|329930188|ref|ZP_08283801.1| serine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328935210|gb|EGG31691.1| serine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 427

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + + + +   ++ G  EM  P + + D    +G+   + +++ +++D 
Sbjct: 165 FYKGLGARLERALISFMMDLHSDKHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKISDT 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T+  R  I +  +LP  +      FR E     R   G++R  +F
Sbjct: 225 D---YYLIPTAEVPVTNYHREEILNSEDLPKYYVAYSSCFRSEAGAAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +     + PE S     KM     R+   L L    M   +G +G
Sbjct: 282 NKVEMVKI-VHPETSFDELEKMTADAERVLQLLNLPYRVMTLCTGDMG 328


>gi|321441337|gb|ADW85083.1| glu- + pro-tRNA synthetase [Synemon plana]
          Length = 134

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+GI   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSRMFEIVYDDPETQEKKYVYQNSWGIT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++             +   D+C+ +  +L   G     D       
Sbjct: 74  GLVLPPRVAAIQVIVVPCGITASSTSEDRKKLLDSCKDLVDKLVAAGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|167465424|ref|ZP_02330513.1| histidyl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382956|ref|ZP_08056788.1| histidyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153076|gb|EFX45534.1| histidyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 424

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 127/440 (28%), Gaps = 53/440 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    +P   +    +  +      R G  E+  P  +  +L+        D   K
Sbjct: 4   QKPKGTQDIIPGQVEKWQRLEKLAGNICRRFGYREIRSPIFEHTELFSRGVGETTDIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  + +   P     +   +  +           Y     FR E  P+ G  R
Sbjct: 64  EMYTFEDKGKRNISLRPEGTAGVVRAYIENKLYGEPDLTKLYYFGPMFRYEQ-PQSG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
           +R+F      +      G       +  ++LR    +GLK + +   S        +  +
Sbjct: 121 NRQFHQFGVEAIGSADPGLDAEAIALGFTFLR---EIGLKDVRIEINSVGTPAVRSVYRE 177

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF          V              N        ++    +         D    
Sbjct: 178 KIREFFAP-------VKDKLCKDCQSRYDRNPMRILDCKIDQKYGEGAPSILDYLDEECS 230

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-------------------- 305
             F+++           +V H    G  Y    +  +K A                    
Sbjct: 231 VHFETVKSMLTDMEIPFDVNHRMVRGLDYYTHTAFEYKAAGIGAIDTVGGGGRYNGLVGE 290

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G+D      + G+     +  ++E+              P  + L  I   +   R  
Sbjct: 291 IGGQDQPGVGFALGV---ERILLLLEAQGVEFA-------KPESLDLYVIGLGEAAERAI 340

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+  +L   G     D  G +I +Q   AD L      I+G   +   ++ +KH  TG
Sbjct: 341 V-KLVHQLRLEGLSTEKDYQGRKIKAQMKSADRLHAAYVAILGDDELERGEITVKHMATG 399

Query: 425 IREDMSLEEVINYASHRFSN 444
            +E + LE        + + 
Sbjct: 400 EQETLPLEGFSQAMKKKINK 419


>gi|116329504|ref|YP_799224.1| seryl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329819|ref|YP_799537.1| seryl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122282406|sp|Q04WE1|SYS_LEPBJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122282717|sp|Q04XA4|SYS_LEPBL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116122248|gb|ABJ80291.1| Serine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123508|gb|ABJ74779.1| Serine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 417

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 9/173 (5%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           Y++   G K    +   + +      G  E+ VP++ + +    +G+Y  +  E  R+  
Sbjct: 165 YTYWKDGAKLERALMNFMLDVHTKEHGYTEVWVPSMVNDESMTATGQYPKFKDEFYRI-- 222

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T+++R  I     LP +       FR E     +   G++R  +
Sbjct: 223 -EKDELNLIPTAEVPLTNLYRDEIIPEDQLPISVTAHTSCFRREAGSYGKDTRGLVRVHQ 281

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           F   +   F   PE S+  + KM      I  +L L    +   SG I  + S
Sbjct: 282 FQKVELVKF-CKPEDSEEEHKKMLSHAENILKKLKLPYRVIILCSGDISANSS 333


>gi|310829040|ref|YP_003961397.1| glycyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308740774|gb|ADO38434.1| glycyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 461

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 128/368 (34%), Gaps = 79/368 (21%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++    + + +PF   QI   FR+E+ P  
Sbjct: 153 MFKTFQGVTEDSSSEIYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 212

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPI 202
            + R+REF   +   F       +      + +Y + F R     LG+K   +R      
Sbjct: 213 FIFRTREFEQMELEFFCEPGTDLE------WFTYWKDFCRNWLFSLGMKEENVRF-RDHE 265

Query: 203 GGDLSH--------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
             +LSH        EF+     GE      +   D     +N    D+   + +  +   
Sbjct: 266 KEELSHYSNATTDVEFLFPFGWGELWGIADRTDFDLT-QHQNVSGKDMQYQDPVTNEKYL 324

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           PY     +  +++F +   N                               +G++  V  
Sbjct: 325 PYVIEPSLGADRMFLAFLCNAME-----------------------KETLENGEERNVMK 361

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                                       +++ +K +++ +        +   ++YA+L+K
Sbjct: 362 IH-------------------------PALSAYKAAVLPLSKK---LSEKATEVYAQLAK 393

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V +D+ G  IG ++   D +G P+ + V      D+ V ++ R T  +  + ++EV
Sbjct: 394 H-FMVDYDEAG-SIGKRYRRQDEIGTPICITVDFDTQEDNAVTLRDRDTMEQVRLPIDEV 451

Query: 435 INYASHRF 442
           + Y   + 
Sbjct: 452 VGYIEKKM 459


>gi|288801299|ref|ZP_06406753.1| glycine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331682|gb|EFC70166.1| glycine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 513

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 120/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM  ++D  +K  +   T + +  +           LPF   QI   FR+E+  R  + R
Sbjct: 201 EMGSVSDAANKIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F ++P      +NK     ++    LG              G  ++ F 
Sbjct: 261 MREFEQMEMQYF-VSPGTELEHFNKWKELRMKWHQALGF-------------GAENYRFH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                           +   +  +    +     VH+   FD  
Sbjct: 307 ----------------------DHEKLAHYANAATDVEFKMPFGFKEVEGVHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++  
Sbjct: 345 QH------------------EKFSGKSIKYFDPQTNESYVPYVIETSIGVDRMFLSIMCH 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++  + +           P ++AP K+ ++ +   D    +   +I   L K   +  ++
Sbjct: 387 AYTEEALENGETRVVLKLPAALAPVKLCVMPLVKKD-GLPEKAREIVDSL-KFHFNCHYE 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V    + D+KV ++ R T  +E + + E+ N    + 
Sbjct: 445 E-KDSIGKRYRRHDAIGTPYCVTVDHDTLKDNKVTLRFRDTMEQERVDISELRNIIEDKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|261403954|ref|YP_003240195.1| seryl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261280417|gb|ACX62388.1| seryl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 427

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + + + +   ++ G  EM  P + + D    +G+   + +++ +++D 
Sbjct: 165 FYKGLGARLERALISFMMDLHSDKHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKISDT 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T+  R  I +  +LP  +      FR E     R   G++R  +F
Sbjct: 225 D---YYLIPTAEVPVTNYHREEILNSEDLPKYYVAYSSCFRSEAGAAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +     + PE S     KM     R+   L L    M   +G +G
Sbjct: 282 NKVEMVKI-VHPETSFDELEKMTADAERVLQLLNLPYRVMTLCTGDMG 328


>gi|167767684|ref|ZP_02439737.1| hypothetical protein CLOSS21_02219 [Clostridium sp. SS2/1]
 gi|167710701|gb|EDS21280.1| hypothetical protein CLOSS21_02219 [Clostridium sp. SS2/1]
 gi|291560818|emb|CBL39618.1| glycyl-tRNA synthetase, dimeric type [butyrate-producing bacterium
           SSC/2]
          Length = 462

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 155/443 (34%), Gaps = 52/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     + +    L +   WV SG   ++   ++   
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFIQESPYNVGIDAAILMNPQTWVASGHLGNFSDPLMDCK 91

Query: 98  DRNDKAMI------YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           + +++         Y   H   +     +  K         + +          +     
Sbjct: 92  ECHERFRADKLIEDYMQEHGMEIEGSVDAWSKEEMESFINEHDVVCPTC----GKKNFTE 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPIGGD 205
            R+F +    +F    E +K++      +   IF  +  K++       +    G IG  
Sbjct: 148 IRQFNLM-FKTFQGVTEDAKNTVYLRPETAQGIF--VNFKNVQRTSRKKIPFGIGQIGKS 204

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +E      T  T+ F   +   F  P ++ ++ +      I    T           +
Sbjct: 205 FRNEITPGNFTFRTREFEQMELEFFCEPDKDLEWFEYWKNYCINWLQTLGIKEDEMRVRD 264

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMS--------ATFKGADGKD 309
              + L    + ++  IE    F +G        T Y L             F   + + 
Sbjct: 265 HEKEELSHYSKATSD-IEFMFPFGWGELWGIADRTDYDLTQHQNTSGEDLTYFDDVNKER 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +      
Sbjct: 324 YIPYVIEPSLGADRVTLAFLCSAYDEEELEGGDTRTVLHFHPALAPVKIGILPLSKK--- 380

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+Y  L+K   +  +D+ G  IG ++   D +G P  V      + D  V ++ 
Sbjct: 381 LSDGAMKVYEELAKE-YNCEFDERGN-IGKRYRRQDEIGTPYCVTFDFDSLEDGAVTVRD 438

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E + +E++  Y + +F+
Sbjct: 439 RDTMEQERVKIEDLKAYFAEKFA 461


>gi|39996759|ref|NP_952710.1| histidyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|46396580|sp|P60915|SYH_GEOSL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|39983647|gb|AAR35037.1| histidyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298505771|gb|ADI84494.1| histidyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 413

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 138/427 (32%), Gaps = 43/427 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP   +   ++ A  R   +  G  E+ +P L+  +L+  S     D   KEM 
Sbjct: 6   KGFNDILPGEVERWQHIEATARRVFSLYGFSEIRIPILEKTELFRRSIGDTTDIVEKEMY 65

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ + A+   P     +   +  H    ++     Y +   FR E RP+ G  R R+
Sbjct: 66  SFVDKGENAVTMRPEGTASVMRSYIEHKLYAQDPVAKLYYMGPMFRYE-RPQKG--RYRQ 122

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F    A    +T          M   Y   F  LGL    ++  S       P       
Sbjct: 123 FHQIGAEVTGVTDPKVDAQVLTMLCHY---FAELGLTEPTLQINSLGCPECRPAYRQALI 179

Query: 209 EF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +F    L    E      +      +  ++    +  +    +                +
Sbjct: 180 DFLRERLDSLCEDCKRRYQTNPLRALDCKSAHCKEATASAPAMLDSLCAGCDDHFTATRR 239

Query: 267 LFDSLPE---NKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--ADGKDHYVQM 314
             +             RG++              G + ++     + G  +D     +  
Sbjct: 240 HLERAGTTYSINNRMVRGLDYYTRTTFELVTGLLGAQSAVAAGGRYDGLISDLGGPAIPG 299

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             + +G  R+   + +    G+    PD         + I A  +  +D   ++   L +
Sbjct: 300 IGFAMGVERIALLLGDQHFVGR----PD---------LFIAALGEEAQDEAFRLMCGLQR 346

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL--E 432
            G  V  D  G+ + SQ   +D       +I+G   ++     +K   TG++ ++ L  E
Sbjct: 347 NGVAVEMDYEGKSLKSQMRRSDKFNARFTLIIGGDELAIGAAVLKAMDTGVQVEVPLTPE 406

Query: 433 EVINYAS 439
           EV    +
Sbjct: 407 EVAARIT 413


>gi|306826462|ref|ZP_07459773.1| histidine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|304431321|gb|EFM34319.1| histidine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 438

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 150/440 (34%), Gaps = 58/440 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 16  QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 75

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 76  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 131

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 132 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 186

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+ G LS +     D    +V  SK+  D     +     D+ D  S 
Sbjct: 187 AAYRQALIDYLTPMRGQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 246

Query: 246 NSIVEQWTAPYA----ATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYFGTKYSLPMSA 300
                      A       D +  +  D            +E        G +Y      
Sbjct: 247 AHFEAVKDMLEALNIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYD----- 301

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G  G       G +G+G  R++  +     + +GI  P       + L  +      
Sbjct: 302 SLVGYFGGPETPGFG-FGLGLERLLMVI-----EKQGITLPIE-TEMDVYLAVLGDG--- 351

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   + + G     D +G +I +QF  AD     L + +G   V   K  IK+
Sbjct: 352 ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKN 411

Query: 421 RLTGIREDMSLEE-VINYAS 439
             +    ++S E+ +IN+A+
Sbjct: 412 NRSRQEVEVSFEDMMINFAN 431


>gi|293189558|ref|ZP_06608278.1| glycine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292821648|gb|EFF80587.1| glycine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 462

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/441 (15%), Positives = 150/441 (34%), Gaps = 53/441 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+         R  A  + +    +   ++WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKENIKRAWWNAMVRRRADVVGLDSSVILPREVWVASGHVKAFTDPLIECL 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           + + +A       E            S  ++      ++ ++  E R   G++++    +
Sbjct: 95  NCHKRARQDQLIEELAEKKGVEESTLSNDDIACPNCGVRGQW-TEPRAFSGLLKTYLGPV 153

Query: 158 KDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            D      L PE ++     +F++Y  +   +           G IG    +E       
Sbjct: 154 DDEAGLHYLRPETAQ----GIFINYANV---MNAARKKPPFGIGQIGKSFRNEITPGNFI 206

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
             T+ F   +   F  P  + ++                    +    E       +   
Sbjct: 207 FRTREFEQMELEFFCEPGTDEEWHQYWIDYRKAWYVNLGIDPENLREYEH---PQEKLSH 263

Query: 277 VSARGIEVGHIFYFG-------------TKYSLPMS-------ATFKGADGKDHY-VQMG 315
            S R +++ + F F              T Y L +          +   + K+ +   + 
Sbjct: 264 YSKRTVDLEYRFGFQGSEWGELEGIANRTDYDLTVHSEASGAKLDYFDPNTKERWTPYVI 323

Query: 316 SYGIGAMR-VVAAVIESSHDGKGII------------WPDSVAPFKISLINIKAHDQVCR 362
               G  R ++A +IE+ H+ +                   +AP K +++ +    ++  
Sbjct: 324 EPSAGLTRSLMAFLIEAYHEDEAPNAKGGVDKRVVLKLDPRLAPVKAAVLPLSRKPELTG 383

Query: 363 DACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              +++   L   G  +V +DD G  +G ++   D +G P  +      + D  V I+ R
Sbjct: 384 P-AQELADELR--GIWNVDYDDAGA-VGRRYRRQDEIGTPFCITYDFDSIEDHAVTIRER 439

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  + L++V +Y   R 
Sbjct: 440 DTMEQVRIPLDKVKSYLIERL 460


>gi|256845829|ref|ZP_05551287.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256719388|gb|EEU32943.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 413

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 131/416 (31%), Gaps = 55/416 (13%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+    G   D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYE-RPQAG--RQREFNQIGLEVFGEKSPKV 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +     +   +LG+  + ++     I    S E   +      + F        
Sbjct: 141 DAEVIAIG---YKFLEKLGITDLEVK-----INSVGSKESRTIYREKLIEHFSKHLDDMC 192

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR----GIEVGH 286
               +  + + +  L+  V++    Y +  ++ +    D     + V       GI+   
Sbjct: 193 DDCKDRINRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYLNVFGIKYTE 252

Query: 287 IFYF--GTKY--SLPMSA--TFKGADGK---------------DHYVQMGSYGIGAMRVV 325
                 G  Y  S          G+ G                D  +    +  G  R++
Sbjct: 253 DPTLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIM 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++  ++                  + I    +   +   KI   L      V+ D   
Sbjct: 313 M-LLGENYPKNNP------------DVYIAWLGENTSETALKIAESLRDNDIKVYIDYSE 359

Query: 386 EQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  G +     AD L     +I+G   ++   V +K   T  ++++ +EE+IN   
Sbjct: 360 K--GMKSHMKKADKLSVRYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIINQIK 413


>gi|295402717|ref|ZP_06812659.1| seryl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109164|ref|YP_003987480.1| seryl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|294975248|gb|EFG50884.1| seryl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214265|gb|ADP72869.1| seryl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 424

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  E+  P L +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGLGARLERALINFMLDVHIEEFGYQEILPPYLVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 223 TED---YFLIPTAEVPVTNLHRDEILSAEDLPIYYAAYSACFRAEAGAAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           +F   +   F + PE S     K+     RI   LGL    +   +G +G
Sbjct: 280 QFNKVELVKF-VKPEDSYDELEKLTNQAERILQLLGLPYRVVCLCTGDLG 328


>gi|237744014|ref|ZP_04574495.1| histidyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431243|gb|EEO41455.1| histidyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 413

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 131/416 (31%), Gaps = 55/416 (13%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+    G   D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYE-RPQAG--RQREFNQIGLEVFGEKSPKV 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +     +   +LG+  + ++     I    S E   +      + F        
Sbjct: 141 DAEVIAIG---YKFLKKLGISDLEVK-----INSVGSKESRTIYREKLIEHFSKHLDDMC 192

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR----GIEVGH 286
               +  + + +  L+  V++    Y +  ++ +    D     + V       GI+   
Sbjct: 193 DDCKDRINRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYLDVFGIKYTE 252

Query: 287 IFYF--GTKY--SLPMSA--TFKGADGK---------------DHYVQMGSYGIGAMRVV 325
                 G  Y  S          G+ G                D  +    +  G  R++
Sbjct: 253 DPTLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIM 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++  ++                  + I    +   +   KI   L      V+ D   
Sbjct: 313 M-LLGENYPKNNP------------DVYIAWLGENTSETALKIAESLRDNDIKVYIDYSE 359

Query: 386 EQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  G +     AD L     +I+G   ++   V +K   T  ++++ +EE++N   
Sbjct: 360 K--GMKSHMKKADKLSVRYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIVNQIK 413


>gi|156973381|ref|YP_001444288.1| histidyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166228629|sp|A7MZE2|SYH_VIBHB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|156524975|gb|ABU70061.1| hypothetical protein VIBHAR_01068 [Vibrio harveyi ATCC BAA-1116]
          Length = 422

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 135/428 (31%), Gaps = 30/428 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENAVKSTVSAYGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRACIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGINE-HVRLELNSIGSQEDRADY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     +        D            + + N  V+         S+   E+     
Sbjct: 178 RTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPEVQAILGDAPRLSEYLGEESKAHF 237

Query: 272 -PENKRVSARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHYVQMGSYGI 319
               + + A GIE         G  Y         +  + A      G  +   +   G 
Sbjct: 238 AGLCELLDAAGIEYTVNERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGG 297

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV- 375
            A   V   +      + ++  +++    +     + +    +       K+  +L +  
Sbjct: 298 SATPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYVVTAGEGTMMVGMKLAEQLREAI 354

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V     G     QF  AD +G  + +++G   V+++ V +K  + G +E  +  EV
Sbjct: 355 PGVRVMSHFGGGNFKKQFKRADKVGAVVALVLGENEVAENTVVLKDLVGGEQETYNQAEV 414

Query: 435 INYASHRF 442
               +   
Sbjct: 415 AEKIAALI 422


>gi|94967422|ref|YP_589470.1| seryl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
 gi|94549472|gb|ABF39396.1| seryl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 432

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 7/178 (3%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG K    +   + +      G  E+  P L +AD    +G+   +  ++ ++   
Sbjct: 168 VYWDLGAKLERALMNFMLDLHTKEHGYTEVLPPFLVNADSMYGTGQLPKFEADLFKVPH- 226

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            ++ +   PT E  +T+++R        LP +       FR E     +   G++R  +F
Sbjct: 227 GERNLYLIPTAEVPVTNLYRDETLDAAQLPTSLTAYTPCFRSEAGSYGKDVRGIIRQHQF 286

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S   + K+  +   +  RLGL    M   +G +G   +  + + 
Sbjct: 287 QKVELVKF-TKPEESYAEHEKLTRNAEEVLQRLGLHYRTMVLCTGDMGFSSAKTYDIE 343


>gi|325915438|ref|ZP_08177752.1| seryl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538320|gb|EGD10002.1| seryl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
          Length = 426

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +A+    +G+   +  ++ +  +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNAESMRGTGQLPKFEDDLFQ-TEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           +    P+ S   + +M      +  RLGL    +   +G +G         E  + +   
Sbjct: 290 TACA-PDDSDAEHQRMTRCAEVVLERLGLPYRKVLLCTGDMGFAAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|83720664|ref|YP_442756.1| histidyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|257138966|ref|ZP_05587228.1| histidyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|123726593|sp|Q2SWE3|SYH_BURTA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|83654489|gb|ABC38552.1| histidyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 446

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 138/440 (31%), Gaps = 55/440 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLS 207
           +F      +       +      M     R++  LGL  I +       AE         
Sbjct: 131 QFHQVGVEALGFAGPDADAEIVMMCQ---RLWEDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 208 HEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +++             + + +    + ++N    +I+     +  +    +       +
Sbjct: 188 IKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQ 247

Query: 266 KLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHYVQ 313
           +L  +            RG++     +F       G + ++     +             
Sbjct: 248 RLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTA 307

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
              + +G  R++  + E             + P +  + +  +   D   R+    +  R
Sbjct: 308 ACGWAMGIERILELLKEEH-----------LVPEQEGVDVYVVHQGD-AAREQAFIVAER 355

Query: 372 LSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI- 425
           L   G DV      +  G+ F      AD  G    VI G   V++    +K  R TG  
Sbjct: 356 LRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDD 415

Query: 426 -----REDMSLEEVINYASH 440
                ++ + +E +  +  +
Sbjct: 416 GEKSVQQSVPVESLTEFLIN 435


>gi|23501771|ref|NP_697898.1| seryl-tRNA synthetase [Brucella suis 1330]
 gi|161618845|ref|YP_001592732.1| seryl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843156|ref|YP_001627560.1| seryl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254704192|ref|ZP_05166020.1| seryl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|260566558|ref|ZP_05837028.1| seryl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261754861|ref|ZP_05998570.1| seryl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|30173166|sp|Q8G139|SYS_BRUSU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083559|sp|A9MAQ8|SYS_BRUC2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083560|sp|B0CLL0|SYS_BRUSI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|23347700|gb|AAN29813.1| seryl-tRNA synthetase [Brucella suis 1330]
 gi|161335656|gb|ABX61961.1| seryl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163673879|gb|ABY37990.1| seryl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|260156076|gb|EEW91156.1| seryl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261744614|gb|EEY32540.1| seryl-tRNA synthetase [Brucella suis bv. 3 str. 686]
          Length = 427

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 176 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 232 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 291 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSTCGDFQGRRMNARY 368


>gi|323170213|gb|EFZ55866.1| histidyl-tRNA synthetase [Escherichia coli LT-68]
          Length = 424

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELQGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|296131564|ref|YP_003638811.1| seryl-tRNA synthetase [Thermincola sp. JR]
 gi|296030142|gb|ADG80910.1| seryl-tRNA synthetase [Thermincola potens JR]
          Length = 423

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V   + +      G  E+  P L + D  + +G+   + ++M R+   
Sbjct: 164 FYKGLGARLERAVINFMLDLHTREHGYTEIFPPFLVNRDSMIGTGQLPKFEEDMFRIDSV 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T+I+R  I     LP         FR E     R   G++R  +F
Sbjct: 224 D---YFLIPTAEVPVTNIYRGEILDGAQLPLYHVAYSACFRAEAGAHGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+  +  ++   LGL    +   +G +G   +  + + 
Sbjct: 281 NKVELVKF-TKPEDSFEELEKLTANAEKVLQLLGLPYRVVTLCTGDLGFSSAKTYDIE 337


>gi|319783192|ref|YP_004142668.1| seryl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169080|gb|ADV12618.1| seryl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 434

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 11/210 (5%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   ++   + +   + +++        + +   PT
Sbjct: 181 RALGQFMLDLHTTEHGYEEVIPPLMVKDNVLFGTNQLPKFEEDLFFTPHGEGR-LGLIPT 239

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I ++  LP  +  +   FR E     R   G++R  +F   +  S   
Sbjct: 240 AEVPLTNLVREEITAHEKLPLRYTALTPCFRSEAGSAGRDTRGMLRQHQFYKVELVSI-T 298

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 299 DQESSLAEHERMTQCAEEVLKRLGLPFRTMTLCTGDMGFGARKTYDIEVWLPGQNAYREI 358

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  DF     +  + D     +    
Sbjct: 359 SSCSVCGDFQARRMDARYKDKDGKGNRFVH 388


>gi|297160648|gb|ADI10360.1| glycyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 460

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 143/449 (31%), Gaps = 70/449 (15%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++W  SG   ++      L 
Sbjct: 33  WDYGPLGVELKENIKRQWWRSMVTSRDDVVGLDSSVILAREVWEASGHVATFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD------ELRPRFGVMR 151
           +       +   H E   +    H +   N       I            E +   G++ 
Sbjct: 90  ECTSCHKRFRADHLEEAYE--AKHGRQPENG---LADINCPHCGTKGSFTEPKQFSGLLS 144

Query: 152 SR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LGLKSIPMRAESGPIGGDLS 207
           +        A    L PE ++  +   F++  +   R    G+           +G    
Sbjct: 145 THLGPTQDSASVAYLRPETAQGIFTN-FLAVQQTSRRKPPFGIAQ---------MGKSFR 194

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E         T+ F   +   F  P E+  + +                  +    E  
Sbjct: 195 NEITPGNFIFRTREFEQMEMEFFVKPGEDETWQEYWMEQRWNWYRDLGLQEANIRWYEHP 254

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD-------- 306
            +   +    S R  ++ + F  G             T Y L   +   G D        
Sbjct: 255 KE---KLSHYSKRTADIEYRFNLGGSEWGELEGVANRTDYDLKAHSQASGQDLSYFDQEA 311

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLIN 353
           G+     +     G  R + A +  ++                 +     +AP K++++ 
Sbjct: 312 GERWTPYVIEPAAGVGRAMLAFLLDAYIEDEAPNAKGKMEKRTVLRLDPRLAPVKVAVLP 371

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  + Q      + +   L K   ++ +DD G  IG ++   D +G P  V V    + D
Sbjct: 372 LSRNPQ-LSPKAKGLATDLRKHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLED 428

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + V ++ R T  +E +SL+++ +Y   R 
Sbjct: 429 NAVTVRERDTMKQERVSLDQIQSYLGGRL 457


>gi|291557530|emb|CBL34647.1| histidyl-tRNA synthetase [Eubacterium siraeum V10Sc8a]
          Length = 441

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 130/428 (30%), Gaps = 37/428 (8%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GR 85
           +  ++ +  +G    LP        V  I R      G  E+  PT +  +L+     G 
Sbjct: 15  KMELVTKKPRGTEDKLPKEIYKWHTVEKIARNVAEAYGCKEIRTPTFEHTELFQRGVGGT 74

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            D   KEM    D+  +++   P            +      LP   Y     FR E  P
Sbjct: 75  TDVVQKEMYTFNDKKGRSITLKPEGTAGAVRAVIENGLLNDVLPLKTYYFTRCFRYEA-P 133

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------ 199
           + G  R REF       F      +      +      I   LG+K+I +   S      
Sbjct: 134 QSG--RLREFNQVGIEYFGTASPAADAE---VIALANDIIKSLGVKNISLEINSIGCPKC 188

Query: 200 GPIGGDLSHEFI-----VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                    E+       L  T   ++  +   +        + F     +         
Sbjct: 189 RAEYHKALKEYYSQYKDQLCGTCLERLDRNPMRLLDCKSEICSSFKKDAPMILDYLCDDC 248

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGA--DGKDH 310
                +      +         +  RG++     +F F +       A   G   +G   
Sbjct: 249 REHFENVKKRLDVLGVSYTVNPLIVRGLDYYTNTVFEFISNEIGSQGAVCAGGRYNGLVE 308

Query: 311 YVQMGS-----YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            +   S     + +G  R++  ++  +   +         P K   + I + D       
Sbjct: 309 EIGGNSVPGLGFAMGLERII--MVMENQKLEFE-------PEKKCDLYIASFDDETSIYA 359

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++  +L + G     D  G    +Q   A+ +G    +++G   ++    ++K    G 
Sbjct: 360 MELVQKLREEGFWAECDISGRSFKAQMKYANKIGATYCMVIGGDEMNTKSAKLKRMSDGT 419

Query: 426 REDMSLEE 433
              ++L++
Sbjct: 420 ETPVTLDD 427


>gi|206580753|ref|YP_002237136.1| histidyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|229558688|sp|B5XNL6|SYH_KLEP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|206569811|gb|ACI11587.1| histidyl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 424

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 138/446 (30%), Gaps = 65/446 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQIGAEVFGLQGPDIDAE---LIMLTARWWRELGISD-HVSLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     + F  K   D            + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAYLEQFTDKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L D       V+ R +  G  +Y  T +      T  G+ G       G Y    
Sbjct: 238 AGLCALLDDAGIRYTVNQRLV-RGLDYYNRTVFEWV--TTSLGSQGT--VCAGGRYDGLV 292

Query: 322 M----RVVAAVIESSHDGKGIIWPDSVAP-------FKISLINIKAHDQ-VCRDACEKIY 369
                R    V  +    + ++   +V P         I L+      Q       E++ 
Sbjct: 293 EQLGGRATPGVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQVR 352

Query: 370 ARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKV 416
             L                G +             FA AD  G  + ++VG   ++D  V
Sbjct: 353 DAL---------------PGVKLMTNHGGGNFKKQFARADKWGARIALVVGESEIADGNV 397

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            +K   +G +  ++ E V  +     
Sbjct: 398 VVKDLRSGEQTTVTQESVAAHLRTLL 423


>gi|218960844|ref|YP_001740619.1| histidyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167729501|emb|CAO80412.1| histidyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 419

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 142/437 (32%), Gaps = 41/437 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +   +G +  LP        +    R+     G  E++ P  + A+L+  S     D 
Sbjct: 1   MKYNIPRGTFDILPEDSYKWQFLQDSFRKMATCFGYEEITTPIFEVAELFERSSGESSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFT--FYQIQLKFRDELRP 145
             KEM R  D+  +     P   E    + RS+++++ + L      + +   FR + RP
Sbjct: 61  VQKEMYRFQDKKGREFALRP---EGTAPVVRSYVENHLDKLSSRTKLFYLGPMFRYD-RP 116

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           + G  R R+F                     +   +L    +LGL ++ +      I   
Sbjct: 117 QAG--RYRQFYQYGIEFIGSNNPYYDAEVIAVAFLWLN---KLGLNNLRLE-----INSV 166

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              +   + D    + +        P   +  + +    L+         +   +    +
Sbjct: 167 GCPDCSAVYDKALQEYYRPFLPKLCPDCVKRLETNPRRLLDC-KVPSCIEFRKNAPSQMD 225

Query: 266 KLFDSLPENKRVSARGIEVGHIFYF-------GTKY--SLPMSATFKGADGKDHYVQMGS 316
            L +   ++       ++  +I Y        G  Y  +      ++G   ++  V  G 
Sbjct: 226 YLDEPCKKHFSAVCDYLQAMNIPYTINPRIVRGLDYYTNTAFEIIYEGLGAQNSLVGGGR 285

Query: 317 YGIGAMRV---------VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           Y     ++          A   E           + + P K     +   D         
Sbjct: 286 YNGLVEQIGGKSIPAIGFAGGFERLLLALEEEKIELIPPSKPDAYLVCVGDNTRLQILPY 345

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L   G  V +D     + +Q   A   G    +I+G   ++   V +K+  TG + 
Sbjct: 346 LNA-LRTKGLIVDYDPDKSSLKAQLKSAASSGAKYAIIIGENELATKTVNLKNLQTGEQI 404

Query: 428 DMSLEEVINYASHRFSN 444
            + ++E   Y  ++  N
Sbjct: 405 AIPMDE--EYTINKMKN 419


>gi|153833517|ref|ZP_01986184.1| histidyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|269962410|ref|ZP_06176760.1| histidyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|148870168|gb|EDL69109.1| histidyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|269832906|gb|EEZ87015.1| histidyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 422

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 141/429 (32%), Gaps = 32/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENAVKSTVSAYGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRACIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGINE-HVRLELNSIGSQEDRADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     + ++    +    
Sbjct: 178 RTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYG 318
               +L D+      V+ R +  G  +Y  T +   +  + A      G  +   +   G
Sbjct: 238 AGLCELLDAAGIEYTVNERLV-RGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLG 296

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV 375
             A   V   +      + ++  +++    +     + +    +       K+  +L + 
Sbjct: 297 GSATPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYVVTAGEGTMMVGMKLAEQLREA 353

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V     G     QF  AD +G  + +++G   V+++ V +K  + G +E  +  E
Sbjct: 354 IPGVRVMSHFGGGNFKKQFKRADKVGAVVALVLGENEVAENTVVLKDLVGGEQETYNQAE 413

Query: 434 VINYASHRF 442
           V    +   
Sbjct: 414 VAEKIAALI 422


>gi|85057912|ref|YP_456828.1| seryl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123518041|sp|Q2NIJ4|SYS_AYWBP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|84790017|gb|ABC65749.1| seryl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 424

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 12/211 (5%)

Query: 8   LPILQENPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +      P+D    + KL +    R   I     G      LG +    +   + +  ++
Sbjct: 130 IRTFPFTPKDHVYLAEKLDILDFKRASKI--SGSGFVVCKGLGARLERALIQFMMDLHSK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +      +G+   +  E+ +L +  +      PT E    ++ R  I 
Sbjct: 188 KGYQEIIPPYIINEKSMFATGQLPKFEDEVYKLYNSKNN-WYLNPTAEVPTINLHREEIF 246

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               LP  +      FR E     +   G+ R  +F   +   F   P+ S     +M  
Sbjct: 247 KPGTLPIKYVSYTTAFRQEAGSAGKDTRGIFRQHQFNKVELIQFCH-PQNSYEYLEQMLK 305

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
               I   L L    +   +G +G  +S  +
Sbjct: 306 DSEEILKLLKLPYRVVLLSTGDLGFSMSKTY 336


>gi|194336041|ref|YP_002017835.1| seryl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693405|sp|B4SF71|SYS_PELPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194308518|gb|ACF43218.1| seryl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 431

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 13/213 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   ++  G +    +   + +    R G  E+  P   + +    +G++  +     
Sbjct: 164 GAGFPVYIGKGARLERALINFMLDCHTERHGYTEVFPPFFVNQESLRGTGQWPKFAD--- 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           ++    +  +   PT E  +T++ R  +   + LP ++      FR E     +   G +
Sbjct: 221 QVYHMEEDDLYAIPTAEVPITNLHRGEMLDTKTLPISYAAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +   F   PE S  +   +  +   I   L +    +   SG I  + +   
Sbjct: 281 RVHQFNKVEMVKF-TRPEESYEALETIRENAEAILTALKIPYRVLLLCSGDISANATKCY 339

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             E    A+    +     +F D+     N  F
Sbjct: 340 DIEVWSPAEQKYLEASSCSNFEDYQARRANIRF 372


>gi|306843782|ref|ZP_07476380.1| seryl-tRNA synthetase [Brucella sp. BO1]
 gi|306275860|gb|EFM57576.1| seryl-tRNA synthetase [Brucella sp. BO1]
          Length = 469

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 218 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 273

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 274 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSV-T 332

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 333 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 392

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 393 SSCSTCGDFQGRRMNARY 410


>gi|124485533|ref|YP_001030149.1| seryl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|166222742|sp|A2SRC6|SYS_METLZ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|124363074|gb|ABN06882.1| seryl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 425

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 12/225 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G Y            +     +     G   +  P + +   + E      + K M +
Sbjct: 162 GAGFYFLKGNLALLDMALQRFALDTIIAKGYTPIIPPYMMNRKSYEEVTDLGDFEKVMYK 221

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
           + D +        T E  M  +++  I   ++LP     I   FR E+        G+ R
Sbjct: 222 IEDDD---AYLIATAEHPMAAMYQDEIFEEKDLPLKMVGISPCFRREIGAHGLDSRGLFR 278

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLS 207
             +F   + + + + PE S   + ++  +   IF +LGL    +   +G IG        
Sbjct: 279 VHQFTKIEQFIYCM-PEKSWEMHEELLANAEEIFTKLGLPYRVVNICTGDIGTVAAKKYD 337

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            E  +  D    +V    +   +     N    D     S     
Sbjct: 338 MEAWMPRDNEYREVVSCSNCTAYQSVRLNIRVRDAHDFESKQWLH 382


>gi|66809557|ref|XP_638501.1| glycyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60467108|gb|EAL65146.1| glycyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 678

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------IIWPDSVAPFKISLINIKAH 357
            +G   +  +     G  R++ +++E ++  +        +  P  +AP K S++ + + 
Sbjct: 514 KNGHTFFPHVIEPSFGLGRIIYSILEQNYYTRENDEQRGVLSLPAIIAPVKASILPLTSS 573

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D++     + I   L +       DD G  IG ++A  D +G P  V +  + V D+ V 
Sbjct: 574 DRIA-PFVQTISKALKEANISTKVDDTGNAIGRKYARTDEIGVPFGVTIDFQTVEDNTVT 632

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R T  +  + + E+ +     
Sbjct: 633 LRERDTTKQVRIPISELASTLRKL 656



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           T + + T+  + +  + + LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 247 TAQGIFTNFGKLYEYNGKKLPFAAAQIGNAFRNEIAPRAGLLRVREFTMAEIEHF 301



 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSA 77
           LM R   I Q         G+Y + P G     N+  + R+         E+   ++   
Sbjct: 73  LMKRRFFITQSFSIYGGQAGLYDYGPPGCAVKANLINLWRQHFVLNEDMSEVDCVSVTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH--EEVMTDIFRSHIKSYRN 127
            +   SG    +      + D   KA  +   H  E  +  + +   K  + 
Sbjct: 133 QVLKASGHVAKFAD--FMVKDEVTKAF-FRADHILEAHIQTLLKDTSKMSKE 181


>gi|332886158|gb|EGK06402.1| glycyl-tRNA synthetase [Dysgonomonas mossii DSM 22836]
          Length = 512

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 112/363 (30%), Gaps = 70/363 (19%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 200 EMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 259

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F    E                                        E  
Sbjct: 260 MREFEQMEMQFFVRPGE----------------------------------------ELD 279

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E      K             F D   L       T           E      
Sbjct: 280 WFAKWKE---VRMKWHKSLGFGDNKYRFHDHDKLAHYANAATDIEFEMPFGFKEVE---- 332

Query: 272 PENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    GI     F      K+S      F     K +   +    IG  R+  + +
Sbjct: 333 ---------GIHSRTDFDLASHEKFSGKKLQYFDPELNKSYTPYVIETSIGVDRMFLSTL 383

Query: 330 ESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            +++  + +           P ++AP K++++ +   D    +   +I   L K      
Sbjct: 384 SAAYAEEVLEDGETRVVLRLPAALAPIKLAVLPLVKKD-GLPEKAREIIDTL-KFDFKCQ 441

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+  + IG ++   D +G P  V V  + + D+ V I++R T  +E ++++++ +  + 
Sbjct: 442 YDE-KDSIGKRYRRQDAIGTPYCVTVDHQSLQDNTVTIRYRDTMQQERVAIDKLSDIIAD 500

Query: 441 RFS 443
           + S
Sbjct: 501 KVS 503


>gi|262305785|gb|ACY45485.1| glu- + pro-tRNA synthetase [Scutigera coleoptrata]
          Length = 134

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           RGI+ G   + G  +S      F+   + +  +V   S+G+   R +  +I    D  G+
Sbjct: 17  RGIQGGTSHHLGQNFSKMFEIVFEDPENNEKKFVYQNSWGLT-TRTIGVMIMIHADNSGL 75

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
           + P  VA  ++ +I         +         C+    RL K       D       G
Sbjct: 76  VLPPKVANIQVIIIPCGITVNLPQQEKDDLLKKCKDYEQRLIKANVRCKGDYRDNYSPG 134


>gi|170726825|ref|YP_001760851.1| seryl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|238688660|sp|B1KG49|SYS_SHEWM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169812172|gb|ACA86756.1| seryl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 428

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 19/230 (8%)

Query: 19  EIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMS 70
           E+  H  +  T  G+  + +    G    +  GQ A     +   + +      G  E  
Sbjct: 135 EVKDHVELGETLGGLDFKSAVKITGSRFIIMKGQIARMHRALAQFMLDLHTTEHGYTETY 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           VP L + D  + +G+   +G+++          + +   PT E  +T+I R  I     L
Sbjct: 195 VPLLVNEDSLMGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNIARDTIIDEAEL 254

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   G++R  +F   +     + PE S  + + +     ++
Sbjct: 255 PVKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL-VKPEDSMAALDALTGHAEKV 313

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             +LGL    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 314 LEKLGLPYRTVILCTGDMGFGSSKTFDIEVWLPAQNTYREISSCSNMQDF 363


>gi|228910750|ref|ZP_04074559.1| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228848701|gb|EEM93546.1| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 487

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 282

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 283 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 327

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 328 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 367

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 368 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 423

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 424 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 482

Query: 440 HRFS 443
            +  
Sbjct: 483 KKIQ 486


>gi|306837337|ref|ZP_07470218.1| seryl-tRNA synthetase [Brucella sp. NF 2653]
 gi|306407589|gb|EFM63787.1| seryl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 469

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 218 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 273

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 274 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSV-T 332

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 333 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 392

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 393 SSCSTCGDFQGRRMNARY 410


>gi|229026377|ref|ZP_04182734.1| Glycyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228734840|gb|EEL85478.1| Glycyl-tRNA synthetase [Bacillus cereus AH1272]
          Length = 487

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 282

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 283 EESMRLRDHGEEELSH---------------YSNATTDIEFRFPFGWGELWGVASRTDFD 327

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 328 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 367

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 368 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 423

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 424 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 482

Query: 440 HRFS 443
            +  
Sbjct: 483 KKIQ 486


>gi|153808899|ref|ZP_01961567.1| hypothetical protein BACCAC_03200 [Bacteroides caccae ATCC 43185]
 gi|149128232|gb|EDM19451.1| hypothetical protein BACCAC_03200 [Bacteroides caccae ATCC 43185]
          Length = 513

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 122/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD + K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTADGSMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K     L+    LG              GD S+ + 
Sbjct: 261 MREFEQMEMQFF-VKPGTELDWFKKWKEIRLKWHKALGF-------------GDASYRYH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I       +     +H+   FD  
Sbjct: 307 ----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 AYCEEQLENGESRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDDL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|254693618|ref|ZP_05155446.1| seryl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|261213884|ref|ZP_05928165.1| seryl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|260915491|gb|EEX82352.1| seryl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
          Length = 427

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 176 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 232 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 291 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSTCGDFQGRRMNARY 368


>gi|218515175|ref|ZP_03512015.1| threonyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 328

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +L +L     +AE   H+ + R        +   G+  W   G +    + A +R     
Sbjct: 234 YLHML----AEAEKRDHRKLGREMDLLHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-A 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYG 90
               E++ P +    LW  SG +  Y 
Sbjct: 289 ADYQEVNAPQVLDTSLWETSGHWGWYQ 315


>gi|161511138|ref|NP_539999.2| seryl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|225852397|ref|YP_002732630.1| seryl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256044558|ref|ZP_05447462.1| seryl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113431|ref|ZP_05454272.1| seryl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|256264105|ref|ZP_05466637.1| seryl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563911|ref|ZP_05834397.1| seryl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265990984|ref|ZP_06103541.1| seryl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994821|ref|ZP_06107378.1| seryl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|30173191|sp|Q8YGS6|SYS_BRUME RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783011|sp|C0RIL8|SYS_BRUMB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225640762|gb|ACO00676.1| seryl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|260153927|gb|EEW89019.1| seryl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|262765934|gb|EEZ11723.1| seryl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|263001768|gb|EEZ14343.1| seryl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094323|gb|EEZ18168.1| seryl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408903|gb|ADZ65968.1| seryl-tRNA synthetase [Brucella melitensis M28]
 gi|326538622|gb|ADZ86837.1| seryl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 427

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 176 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 232 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 291 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSTCGDFQGRRMNARY 368


>gi|306840377|ref|ZP_07473144.1| seryl-tRNA synthetase [Brucella sp. BO2]
 gi|306289662|gb|EFM60862.1| seryl-tRNA synthetase [Brucella sp. BO2]
          Length = 469

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 218 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 273

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 274 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSV-T 332

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 333 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 392

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 393 SSCSTCGDFQGRRMNARY 410


>gi|289662416|ref|ZP_06483997.1| seryl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667711|ref|ZP_06488786.1| seryl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 426

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++ +  +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFQ-TEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           +    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACA-PEDSDAEHQRMTRCAELVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|255994489|ref|ZP_05427624.1| glycine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993202|gb|EEU03291.1| glycine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 466

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 116/358 (32%), Gaps = 57/358 (15%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F+S  +S  + LPF   QI   FR+E+ P  
Sbjct: 156 MFKTYQGVTEGAKAEIYLRPETAQGIFVNFKSVQRSMRKKLPFGICQIGKSFRNEITPGN 215

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRLGLKSIPMRAESGPIGGDL 206
            + R+REF   +   F   P+ S   ++  + +Y       +G+K   +R        + 
Sbjct: 216 FIFRTREFEQMELEFFCA-PDESMGWFD-FWQNYCVEFLKTIGIKEENIR------KREH 267

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S E +       T +              N  F                   T +   E 
Sbjct: 268 SKEELSHYSEATTDI------------EYNFSFGWGELWGIANRTDFDLKQHTKESGEEL 315

Query: 267 LFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++     N++ +   IE  +G         +          D     V M          
Sbjct: 316 VYQDPETNRKFTPYCIEPSLGADRLLLAVLNDAYEEEIVDKDKNTSRVVM---------- 365

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
                              +AP+K +++ +        D    I+ +L K    V +D  
Sbjct: 366 --------------RLHPYLAPYKAAVLPLSKQLSSVSD---PIFEKLIK-DFPVDYDKT 407

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G  IG ++   D +G P  + V      D KV I+ R T  +  + ++EV  Y   R 
Sbjct: 408 G-SIGKRYRRQDEIGTPYCICVDFDTEKDGKVTIRDRDTMEQTRIGIDEVSGYIGDRI 464


>gi|227821937|ref|YP_002825907.1| seryl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|254783042|sp|C3MBU2|SYS_RHISN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|227340936|gb|ACP25154.1| seryl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 427

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKAL--DNVNAIIREEQ- 61
           P     P +       L    G +         G    +  GQ A     +   + +   
Sbjct: 132 PTWNHKPLEHFEIGEGL----GFMDFEGAARIAGSRFTILKGQLARLERALGQFMLDLHT 187

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G IE+  P L   D    +G+   + +++ R  D         PT E  +T++ R  
Sbjct: 188 QEHGYIEVQPPLLVRDDAMYGTGQLPKFAEDLFRTTD----GRWLIPTAEVPLTNMVREQ 243

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP  F  +   FR E     R   G++R  +F   +  S     E S   + +M
Sbjct: 244 ILEGEKLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFNKVELVSL-TDAETSVDEHERM 302

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                 +  RLGL    M   +G +G         E  +       ++       DF   
Sbjct: 303 TACAEEVLKRLGLHYRVMTLCTGDMGFGARKTYDLEVWLPGQDAYREISSCSVCGDFQAR 362

Query: 234 SENTDF 239
             N  +
Sbjct: 363 RMNARY 368


>gi|162139387|ref|YP_281288.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|83305880|sp|Q48QS7|SYH_STRPM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 426

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPEDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 SAYRQTLIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEA-------VKDMLEALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       + L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDVYLAVLG--- 337

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 338 DSANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQEVEVSFED 412


>gi|170717819|ref|YP_001784880.1| seryl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083572|sp|B0UUT7|SYS_HAES2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|168825948|gb|ACA31319.1| seryl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 429

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 14  NPRDAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTG 65
              D E+  H  +     G+         G    +  GQ A     +   + +    + G
Sbjct: 131 KKFDFEVKDHVALGEILGGLDFAAGVKLSGARFAVIKGQIARMHRALAQFMLDLHTEQHG 190

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E  VP L +      +G+   +G+E+  +    N++     PT E  +T++ R  I  
Sbjct: 191 YTEAYVPYLVNHTTLYGTGQLPKFGEELFHIKPLENEQTYALIPTAEVPVTNLVRDEIID 250

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 251 EADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VEPEKSMEALEELTNQ 309

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   L L    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 310 AEKVLQLLNLPYRKVLLCTGDMGFGATKTYDLEVWIPAQNTYREISSCSNMWDF 363


>gi|193213734|ref|YP_001994933.1| histidyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|259511939|sp|B3QS95|SYH_CHLT3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|193087211|gb|ACF12486.1| histidyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 427

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 147/440 (33%), Gaps = 48/440 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  KG    LP        V   +R    R G  E+  P  +   L+        D 
Sbjct: 1   MKFQTIKGTKDILPSEIHKWHYVENTVRGVFQRFGYNEIRTPVFEQTALFQRGIGETTDI 60

Query: 89  YGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            GKEM     D   +++   P     +   +  H  S  +     + I   FR E RP+ 
Sbjct: 61  VGKEMYSFQPDPESESLTLRPEMTAPVMRAYLQHSLSGTSPATKVFYISEIFRKE-RPQA 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGP 201
           G  R R+F              +      + +    I+ +LG+K+  +R       ES  
Sbjct: 120 G--RQRQFWQFGCECIGSDQPEADAE---VILLMTEIYRQLGIKNFTLRLNSLGETESRL 174

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
              +    ++        ++  ++   +    + S+N    +II+    + ++    +  
Sbjct: 175 AHREALQTYLKPHFDLLDEISKTRFEKNPLRILDSKNPALAEIIAGAPHITEFLDDASKA 234

Query: 260 SDVHNEKLFDSLPENKRVSA---RGIEVG--HIFYF-------------GTKYSLPMSAT 301
                +    +   +  V     RG++      F               G +Y     AT
Sbjct: 235 HFQTVQTYLKNAGLDFTVDPTLVRGLDYYSRTAFELVSTDLGAQDALAGGGRYDS--LAT 292

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             GA      V    +  G  R++  +I    D    + P   AP    L+ I     V 
Sbjct: 293 VLGAKNSSAAV---GFAAGIERLL--IIMEKLDLFQAVLPP--AP----LLFIATQSPVA 341

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++   +   RL   G  V  D +G  + +Q   A+       +IVG + +S  + ++KH 
Sbjct: 342 KEWAFQTVNRLRTEGIHVALDLLGRSLKAQMREANRTHAKYVLIVGEEELSTGRFQLKHL 401

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  + ++S  ++       
Sbjct: 402 QTSEQVELSEADIFTKMQTE 421


>gi|161870532|ref|YP_001599704.1| seryl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|189083575|sp|A9M1Q6|SYS_NEIM0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|161596085|gb|ABX73745.1| seryl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|254674222|emb|CBA10006.1| Seryl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 431

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYETLEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|62289830|ref|YP_221623.1| seryl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699755|ref|YP_414329.1| seryl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024071|ref|YP_001934839.1| seryl-tRNA synthetase [Brucella abortus S19]
 gi|254689135|ref|ZP_05152389.1| seryl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254697268|ref|ZP_05159096.1| seryl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701649|ref|ZP_05163477.1| seryl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|254706906|ref|ZP_05168734.1| seryl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254709987|ref|ZP_05171798.1| seryl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254713987|ref|ZP_05175798.1| seryl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716954|ref|ZP_05178765.1| seryl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|254730167|ref|ZP_05188745.1| seryl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256031480|ref|ZP_05445094.1| seryl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256060990|ref|ZP_05451148.1| seryl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256159606|ref|ZP_05457368.1| seryl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256254886|ref|ZP_05460422.1| seryl-tRNA synthetase [Brucella ceti B1/94]
 gi|256369312|ref|YP_003106820.1| seryl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168614|ref|ZP_05755425.1| seryl-tRNA synthetase [Brucella sp. F5/99]
 gi|260545423|ref|ZP_05821164.1| seryl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260754634|ref|ZP_05866982.1| seryl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|260757857|ref|ZP_05870205.1| seryl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|260761680|ref|ZP_05874023.1| seryl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261218759|ref|ZP_05933040.1| seryl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261222070|ref|ZP_05936351.1| seryl-tRNA synthetase [Brucella ceti B1/94]
 gi|261314369|ref|ZP_05953566.1| seryl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261317535|ref|ZP_05956732.1| seryl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261321742|ref|ZP_05960939.1| seryl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261324992|ref|ZP_05964189.1| seryl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261752202|ref|ZP_05995911.1| seryl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261758088|ref|ZP_06001797.1| seryl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988570|ref|ZP_06101127.1| seryl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|265998035|ref|ZP_06110592.1| seryl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|81309426|sp|Q57DM2|SYS_BRUAB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123546686|sp|Q2YNM6|SYS_BRUA2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238689362|sp|B2S5B8|SYS_BRUA1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|62195962|gb|AAX74262.1| SerS, seryl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82615856|emb|CAJ10860.1| tRNA synthetases, class-II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa:Aminoacyl-transfer RNA synthetase, class II
           [Brucella melitensis biovar Abortus 2308]
 gi|189019643|gb|ACD72365.1| seryl-tRNA synthetase [Brucella abortus S19]
 gi|255999472|gb|ACU47871.1| seryl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260096830|gb|EEW80705.1| seryl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260668175|gb|EEX55115.1| seryl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|260672112|gb|EEX58933.1| seryl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674742|gb|EEX61563.1| seryl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|260920654|gb|EEX87307.1| seryl-tRNA synthetase [Brucella ceti B1/94]
 gi|260923848|gb|EEX90416.1| seryl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294432|gb|EEX97928.1| seryl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261296758|gb|EEY00255.1| seryl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261300972|gb|EEY04469.1| seryl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261303395|gb|EEY06892.1| seryl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261738072|gb|EEY26068.1| seryl-tRNA synthetase [Brucella sp. F5/99]
 gi|261741955|gb|EEY29881.1| seryl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|262552503|gb|EEZ08493.1| seryl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|264660767|gb|EEZ31028.1| seryl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 427

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 176 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 232 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 291 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSTCGDFQGRRMNARY 368


>gi|256257384|ref|ZP_05462920.1| seryl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260883661|ref|ZP_05895275.1| seryl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260873189|gb|EEX80258.1| seryl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
          Length = 427

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 176 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 232 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGAAGRDTRGMLRQHQFLKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 291 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSTCGDFQGRRMNARY 368


>gi|123968914|ref|YP_001009772.1| seryl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166222764|sp|A2BSA4|SYS_PROMS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123199024|gb|ABM70665.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 425

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 76/194 (39%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGARLERALINFMLDMHTKNGYLELMPPALVNSESLTGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T + R+ +   ++LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTALHRNELIDPKHLPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ ++      I  +L L    +   +G +G   S     E  + +  
Sbjct: 289 YWF-CDPSKSLEAHKEITTDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|161761295|ref|YP_061151.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|73919756|sp|Q5X9E5|SYH_STRP6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 426

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 AAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEA-------VKDMLEALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       + L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMVI-----EKQGITLPIE-TEMDVYLAVLGDG- 339

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 340 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQEVEVSFED 412


>gi|329121075|ref|ZP_08249706.1| serine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327471237|gb|EGF16691.1| serine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 434

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 19/247 (7%)

Query: 20  IASHKLMLRTGMIHQHSKG------IYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVP 72
            A ++L     M+     G         ++    K    V   + +     G   E+  P
Sbjct: 137 KAHYELGESLKMLDFERAGKVSGARFTFYIDAIAKLERAVYNFMLDLHTVEGTFTEVIPP 196

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +      +G+   + ++M ++     + M   PT E  +T+ F   I     LP  F
Sbjct: 197 YIINESSMQGTGQLPKFAEDMYKV---EGETMYMTPTAEVPLTNYFAGEILDASILPVHF 253

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +   FR E     +   G++R  +F   +   +   PE SK     +     ++   L
Sbjct: 254 TALTPCFRKEAGSAGKDTRGLIRQHQFQKVEMVKY-CKPEDSKDELESLTNEAEKVLQEL 312

Query: 189 GLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            L    +   +G IG   S     E  + A     ++    + +DF     N  F     
Sbjct: 313 NLPYRVVCLCTGDIGFSASKTYDVEVWMPAQNKYREISSCSNCLDFQARRANIRFRRCKG 372

Query: 245 LNSIVEQ 251
                  
Sbjct: 373 AKPEFVH 379


>gi|290475998|ref|YP_003468894.1| histidine tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289175327|emb|CBJ82130.1| histidine tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 425

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 142/437 (32%), Gaps = 54/437 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP        V + ++      G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDCLPAETAIWQRVESTVKRVLAGYGFSEIRTPIVEQTPLFKRAIGEVTDVIEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P +          H   Y       + I   FR E RP+ G  R R+F
Sbjct: 70  FDDRNGESLALRPENTAGCVRAGIQHGLLYNQE-QRLWYIGPMFRYE-RPQKG--RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-------PMRAESGPIGGDLSH 208
               A  F L           M +   R +  LG+              ++     +   
Sbjct: 126 HQLGAEVFGLQGPDIDAE---MILMTARWWRELGIAEHVTLELNSIGSLDARANYREALV 182

Query: 209 EFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            F+        +    + + +    + S+N +   +++    +  +    +        +
Sbjct: 183 AFLEQHKETLDEDCQRRMYTNPLRVLDSKNPEIQVLLNDAPALFDYLDTESKEHFDGVCR 242

Query: 267 LFDSLP---ENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKDHYV 312
           + DS        +   RG++     +F       G + ++     + G      GK    
Sbjct: 243 ILDSAGIKYHLNQRLVRGLDYYNRTVFEWVTSALGAQGTVCAGGRYDGLVEQLGGKSTPA 302

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----HDQVCRDACEKI 368
               + +G  R+V  V E +        P+ VA   ++ + + +      Q   +  E+I
Sbjct: 303 V--GFAMGMERMVLLVQEVN--------PEFVADLAVADVYLSSFGEGSQQAALNLAEQI 352

Query: 369 YARLSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
              L ++             G    Q   AD  G  + +I+G   +    + +K    G 
Sbjct: 353 RDELPELRLM-----TNHGGGNFKKQLGRADKHGAKVALILGEDEIRAGNITVKDLRNGE 407

Query: 426 REDMSLEEVINYASHRF 442
           +E +S + +    S   
Sbjct: 408 QETLSQQAIAARLSELL 424


>gi|160946180|ref|ZP_02093391.1| hypothetical protein PEPMIC_00142 [Parvimonas micra ATCC 33270]
 gi|158447703|gb|EDP24698.1| hypothetical protein PEPMIC_00142 [Parvimonas micra ATCC 33270]
          Length = 421

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG K    +   + +  +  G  E+ VP L + +    +G+   +  +M  +     K +
Sbjct: 168 LGAKLERALINFMLDLHSGQGYEEVGVPVLINRNSMYGTGQLPKFEDDMFYVPS---KDL 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++  + I  +  LP  +      FR E     R   G++R+ +F   + 
Sbjct: 225 FLAPTAEVPVTNLLANEILEFEKLPTYYTAFTYCFRQEAGSAGRDTRGLIRNHQFDKVEM 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             F + PE S     K+      I   L +    +   +G IG   +  + + 
Sbjct: 285 VKF-VNPENSYDELEKLTNDAEEILKLLEIPYRVVCLCTGDIGFSSAKTYDIE 336


>gi|21242403|ref|NP_641985.1| seryl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
 gi|30173178|sp|Q8PLY2|SYS_XANAC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21107843|gb|AAM36521.1| seryl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 426

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++ +  +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFQ-TEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVREEIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           +    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACA-PEDSDAEHQRMTRCAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|89072703|ref|ZP_01159268.1| histidyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89051523|gb|EAR56977.1| histidyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 422

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 146/438 (33%), Gaps = 50/438 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +++  +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGTVKQVISAYGYNEVRMPIVESTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIQNGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG   +    
Sbjct: 122 YRQFHQVGVEVFGLNGPDIDAELIMM---TARLWRELGINE-HVRLELNSIGSLEARAEY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N    +I+     + ++    +    
Sbjct: 178 RKALIAFLEQHLDVLDEDAKRRMYTNPLRVLDTKNAAIQEILEDAPKLSEYLDLESKEHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFYFGTKYSLPMSATFKGA----------D 306
               +L D+     +      RG++     +F + T+ SL    T  G            
Sbjct: 238 AGLCELLDAAGIKYQVNERLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQLG 296

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK        + +G  R+V  ++  + +   +          + +  + A  +       
Sbjct: 297 GKATPSV--GFAMGLERLV--LLMKALEQDEVR-------RSVDVYMVTAG-EGTLAVGM 344

Query: 367 KIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           K+  +L     G  V  +  G     QF  AD +G  + +++G   ++++ V +K    G
Sbjct: 345 KLAEKLRTEVPGLRVMTNFGGGNFKKQFKRADNVGAAVALVLGENEIAENSVVVKDLHGG 404

Query: 425 IREDMSLEEVINYASHRF 442
            +  ++ +EV    +   
Sbjct: 405 EQTTIAQDEVAAKLAALI 422


>gi|290967982|ref|ZP_06559531.1| serine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781888|gb|EFD94467.1| serine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 424

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 11/210 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y ++  G +    V   + +    + G  E+  P + +      +G+   + ++M +L 
Sbjct: 162 FYYYIGAGARLERAVYNFMLDRHTEKDGYTEVIPPYIVNRKAMTGTGQLPKFSEDMYQLQ 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               + M   PT E  +T+ +   I     LP     +   FR E     R   G++R  
Sbjct: 222 VE-GQDMFLIPTAEVPLTNYYSGEILRADQLPVYVTALTPCFRAEAGSAGRDTRGLIRQH 280

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   +  TPE S    +K+  +   I   L L    +   +G IG   +     E
Sbjct: 281 QFHKVEMVKY-TTPESSYDELDKLTRNAEDILKALELPYHVVCLCTGDIGFSAAKTFDVE 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               A     ++    +  DF     N  F
Sbjct: 340 VWFPAQGKYREISSCSNTEDFQARRANIRF 369


>gi|119026156|ref|YP_910001.1| glycyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765740|dbj|BAF39919.1| glycyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
          Length = 491

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 155/486 (31%), Gaps = 63/486 (12%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK     L E    A+      +   G I+  ++  + + PLG    DN+       
Sbjct: 1   MAVSK-----LDEVVSLAKRRG--FVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRS 53

Query: 61  QNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              T    + +    +    +WV SG    +   +  +   N          EE   +  
Sbjct: 54  MVVTRGDVVGVDTSIILPTPVWVASGHVAVFNDPL--VECLNCHKRQRSDKLEESYAEKH 111

Query: 119 RSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNK 176
              +               + +  E R    ++R+    ++D  S   L PE ++  +  
Sbjct: 112 GDKLPENGMADIVCPDCGTRGKWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVD 171

Query: 177 MFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                     +   G+ +         +G    +E         T+ F   +   F  P 
Sbjct: 172 FKNVMTSSRKKPPFGIAN---------MGKSFRNEITPGNFIFRTREFEQMEMEFFVKPG 222

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--- 291
           E+  +                    +  H E   + L    +   R +++ + F F    
Sbjct: 223 EDEAWHQYWIDARTQWYLDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYKFGFQGSD 279

Query: 292 ----------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSH 333
                     T + L   A   G D        G+ +   +     G  R +   +  ++
Sbjct: 280 WGELEGIANRTDFDLSAHAEHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMCFLVDAY 339

Query: 334 DGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           D                +     +AP K +++ +     +     +K+ A L +    + 
Sbjct: 340 DVDEAPNTKGGVDKRTVLHLDPRLAPVKAAVLPLSKKPDLQS-VAQKLAADLRQNEWMID 398

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +E +SL++V +Y + 
Sbjct: 399 YDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQERVSLDKVADYIAE 457

Query: 441 RFSNNR 446
           R    R
Sbjct: 458 RIGEKR 463


>gi|313896743|ref|ZP_07830291.1| serine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974660|gb|EFR40127.1| serine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 423

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    V +G+   + ++M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNESSMVGTGQLPKFAEDMFKL--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 221 EGLDYYLVPTAEVPTTNYHRDEILDAAQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F +TPE S      M  +   +   L L    ++  +G +    +     E  
Sbjct: 281 NKVELIKF-VTPETSWDELESMVEAAEDVLRTLELPYRVIQLCTGDMSFTSAKTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           + A     ++    +  D+     N  +            
Sbjct: 340 MPAQNKYREISSCSNCTDYQARRANIKYRPARGAKPAFLH 379


>gi|282164426|ref|YP_003356811.1| histidyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282156740|dbj|BAI61828.1| histidyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 434

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 143/446 (32%), Gaps = 53/446 (11%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYD 87
             M  Q  KG   + P    A   V   I E     G  E+  P+L+  +L+  +SG  D
Sbjct: 1   MFMRFQSLKGFRDFYPEEMSARRKVLDKIFETVRPYGFREVDSPSLEMLELFRVKSG--D 58

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
               +    AD+  + +   P     M  +     KS +  P  ++ +   +R E  P+ 
Sbjct: 59  EILTQTFNFADKGKRDVTLIPELTPTMARMVVEREKSLKR-PIKWFSMPKMWRYEE-PQS 116

Query: 148 GVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           G  R REF   +   F +  PE             L++   L  + I   ++   + G L
Sbjct: 117 G--RLREFYQLNVDIFGVPGPEADAEVLAAGIDIMLKL--DLEGQFIFKVSDRRLMQGVL 172

Query: 207 SHEFIVLADTGE--------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
             E + +AD  E               +F +    ++  D      L+ +  +     A 
Sbjct: 173 --ESMGIADRREAVFAAIDKRYKVTHSEFKELLAKADLDDLKIGQLLSILDSRGPMLEAL 230

Query: 259 TSDVHNEKLFDSLPENKRVSARGIE----VGHIFYF---------GTKYSLPMSATFKGA 305
                   L +        S   +     + H+  +         G  Y           
Sbjct: 231 QKLRGLISLENEQTRAGYESLEKLTDLLVMYHMEQYCELDPSVIRGLAYYTGTVFECYDT 290

Query: 306 DGKDHYVQMGSYGIGAMRVVA-------------AVIESSHDGKGIIWPDSVAPFKISLI 352
            G+   +  G      + +               AV+E        +WP+       +  
Sbjct: 291 KGELRAIFGGGRYDKIIELFGGEPMPAVGFGMGDAVLEILMRRAK-VWPEE---KLTTDY 346

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I        +    +   L +    V  D +G   G+Q   A+ +G    +I+G K ++
Sbjct: 347 FILTTSAQYMETALFLAQALREKEFIVETDLLGRNFGNQMKYANSIGAKYVLILGEKEMA 406

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYA 438
             +V +K   TG +     EEVI + 
Sbjct: 407 GGQVSVKDMKTGEQRT---EEVIRFL 429


>gi|262305705|gb|ACY45445.1| glu- + pro-tRNA synthetase [Argulus sp. Arg2]
          Length = 134

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  +V   S+G    R +  +I    D  
Sbjct: 15  SGRGIQAATSHHLGQNFSKMFDIVFEDPETQEKKHVYQNSWGFT-TRTIGIMIMVHSDNM 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQVCRDA---CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA +++ +I     +   ++   D    C+     L   G  V  D       
Sbjct: 74  GLVLPPKVACYQVVIIPCGITVNMKEEEKVDLISKCQWYEKTLKDGGVRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|257866231|ref|ZP_05645884.1| seryl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257873255|ref|ZP_05652908.1| seryl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257800189|gb|EEV29217.1| seryl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257807419|gb|EEV36241.1| seryl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 425

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + ++     G  EM  P + ++     +G++  + +++ +LA
Sbjct: 163 FVYYKGLGARLERALYNFMLDQHVYEHGYTEMITPYIVNSQAMFGTGQFPKFKEDVFQLA 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +   +   PT E  +T+ ++  I     LP  F  +   FR E     R   G++R  
Sbjct: 223 DTD---LTLIPTAEVPLTNYYQGEILEQEQLPAYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    + S     KM  +   I  +L L    +   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DADHSYEELEKMTANAEDILQKLNLPYRVLSLCTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D       + 
Sbjct: 339 VWIPAQEMYREISSCSNCEDFQARRAMIRYRDQEGKIHYMH 379


>gi|238895969|ref|YP_002920705.1| histidyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548287|dbj|BAH64638.1| histidyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 424

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 138/446 (30%), Gaps = 65/446 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQIGAEVFGLQGPDIDAE---LIMLTARWWRELGISE-HVSLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     + F  K   D            + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAYLEQFTDKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L D       V+ R +  G  +Y  T +      T  G+ G       G Y    
Sbjct: 238 AGLCALLDDAGIRYTVNQRLV-RGLDYYNRTVFEWV--TTSLGSQGT--VCAGGRYDGLV 292

Query: 322 M----RVVAAVIESSHDGKGIIWPDSVAP-------FKISLINIKAHDQ-VCRDACEKIY 369
                R    V  +    + ++   +V P         I L+      Q       E++ 
Sbjct: 293 EQLGGRATPGVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQVR 352

Query: 370 ARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKV 416
             L                G +             FA AD  G  + ++VG   ++D  V
Sbjct: 353 DAL---------------PGVKLMTNHGGGNFKKQFARADKWGARVALVVGESEIADGNV 397

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            +K   +G +  ++ E V  +     
Sbjct: 398 VVKDLRSGEQTTVTQESVAAHLRTLL 423


>gi|291295942|ref|YP_003507340.1| histidyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290470901|gb|ADD28320.1| histidyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 428

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 125/412 (30%), Gaps = 43/412 (10%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY---GKEMLRLADRN 100
           P  +     + +   E     GA  +  P  +  +++ +     S     KEM    DR 
Sbjct: 19  PFREPVFRYIISTAEEVLRGAGAQMVYTPIFEYLEVFQKGVGLTSDIVVKKEMFVFEDRG 78

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            + +   P     +   F  H       P   +     FR E R + G  R ++F   D 
Sbjct: 79  GRLLALRPEPTAAIVRAFNEHGMKVWPQPVRLFTWGPIFRGE-RQQKG--RYKQFHQVDY 135

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPI 202
            +  L+               +RI+  LGL+++ ++  S                  GP 
Sbjct: 136 EALGLSDPLLDAE---AIALMVRIYKTLGLRNLEVKLGSVGDPEDRVRYNQYLRELFGPY 192

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPS---ENTDFDDIISLNSIVEQWTAPYAAT 259
             DLS +  V  +    ++  SK   D  + +        + +        +    Y   
Sbjct: 193 ASDLSEDSRVRVEANPMRILDSKSERDQALIAELQPKPMLEFLGPAAQKFHEQVCNYLDR 252

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
             V        +           EV H    G K +L     + G         +    +
Sbjct: 253 LGVAYTVDPSLVRGLDYYVRTAWEVHHAG-IGAKSALGGGGRYDGLSEMLGGPPLPGVGF 311

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A+     + +G+  P   +P     + +   D+  +     +  +L +   
Sbjct: 312 GIGVERLAIAL-----EQEGVALPADPSPT----LYLAPLDEAAKIEVLALAEQL-RPKI 361

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            V      +        A   G      +G    +   V +KH  TG +  +
Sbjct: 362 HVEIGYTPKSPRKALEDALKKGARYVGFIGEAERARGVVTLKHLETGEQRAL 413


>gi|75760257|ref|ZP_00740310.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228903415|ref|ZP_04067542.1| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228968019|ref|ZP_04129027.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|74492252|gb|EAO55415.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228791690|gb|EEM39284.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856190|gb|EEN00723.1| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 487

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 282

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 283 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 327

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 328 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 367

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 368 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 423

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 424 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 482

Query: 440 HRFS 443
            +  
Sbjct: 483 KKIQ 486


>gi|315652484|ref|ZP_07905469.1| glycyl-tRNA synthetase beta subunit [Eubacterium saburreum DSM
           3986]
 gi|315485273|gb|EFU75670.1| glycyl-tRNA synthetase beta subunit [Eubacterium saburreum DSM
           3986]
          Length = 462

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 122/365 (33%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDAKNVVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQVGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      +  Y R F R  LK++ ++           
Sbjct: 214 FTFRTREFEQMELEFFCKPGSDLE------WFDYWRSFCRDWLKALGIK----------- 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D         K+ + F   +              +           + H E  
Sbjct: 257 EEQMRLRD-------HDKEELSFYSNATTDIEFLFPFGWGELWGIADRTDYDLNRHQEVS 309

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                  G   S      F     + +   +    +GA RV  A
Sbjct: 310 -----------------------GQDLS-----YFDDETSERYIPYVIEPSLGADRVTLA 341

Query: 328 VIESSHDGK---------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D +          + +  ++AP KI ++ +        +   KI   LSK   +
Sbjct: 342 FLCAAYDEEILEGGETRTVLHFHPALAPVKIGILPLSKK---LNEGALKISEELSKY-YN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD G  IG ++   D +G P  +       SD  V ++ R +  +  + + E+ NY 
Sbjct: 398 VEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSESDHAVTVRDRDSMEQVRIPIAELKNYF 456

Query: 439 SHRFS 443
             +F 
Sbjct: 457 EDKFR 461


>gi|298674180|ref|YP_003725930.1| histidyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298287168|gb|ADI73134.1| histidyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 408

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 140/422 (33%), Gaps = 42/422 (9%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
            +G   +LP        V   IR+   + G  E+  PT ++ +L+  +SG  D    E+ 
Sbjct: 6   PRGTRDFLPGETARRRYVENTIRDVVIKWGYSEVMTPTFETLELFTLKSG--DDIIGELY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + +   P     +  ++ + ++S  + P   +  +  FR E RP+ G  R RE
Sbjct: 64  NFTDKGGREIALRPELTAPVMRMYVNKLQSEPH-PLKLFYFENCFRYE-RPQKG--RFRE 119

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI-----GGDLSHE 209
           F              +      +    + I   +G+       +   I     G D   +
Sbjct: 120 FWQFGTEVIGSDKPEADAE---VIALAVNILDSVGVNGALHVGDLRIIRHILSGLDNEQQ 176

Query: 210 FIVL------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             V+       D G          ++ P  +    F+ I    +   +            
Sbjct: 177 TKVMRYVDKNDDKGLDDYLEE---IEVPAETRRNLFELISLQGNDALEKAREITGDIPEL 233

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +         +       I+ G     G  Y   M                G      ++
Sbjct: 234 DNFEELLKLLDVYGLDYTIDFGIAR--GLDYYTGMVFEIYAEGLGAQNQVCGGGSYQLIK 291

Query: 324 VVAAVIESSHDGKGIIWPD-----SVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GC 377
           +     E    G GI +       S+ P +   + + + D    +A + I  RL +V   
Sbjct: 292 LFGGG-EVPSTGFGIGFDRIMEVASIEPEETKKLVVVSTDSTRFEAID-IANRLREVYPT 349

Query: 378 DVFWDDMGEQIGSQFA---VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            V   +   +    FA    AD       VIVG + +   K+ +K+  TG +  M+++E+
Sbjct: 350 HVDIMERNFKSQLSFANMVEAD-----YAVIVGEREIESGKLTLKNMHTGEQCSMTVDEI 404

Query: 435 IN 436
           +N
Sbjct: 405 LN 406


>gi|196016607|ref|XP_002118155.1| hypothetical protein TRIADDRAFT_33686 [Trichoplax adhaerens]
 gi|190579281|gb|EDV19380.1| hypothetical protein TRIADDRAFT_33686 [Trichoplax adhaerens]
          Length = 677

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 131/431 (30%), Gaps = 82/431 (19%)

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRDELRPRFG 148
           M R         +    P   + M   F  ++  Y    LPF   QI   FR+E+ PR G
Sbjct: 227 MFRTEIGPSGGVSGYLRPETSQGMFVNF-DYLLEYNQGKLPFAAAQIGSAFRNEVSPRSG 285

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF----HRLGLKSIPM----RAESG 200
           ++R REF + +   F    +     ++ +    + +F       G  +  M      + G
Sbjct: 286 LLRVREFTLGEIEYFYHPNDNDHFKFDSVADVEVTLFPKDHQVSGKPTRKMSIKNAVDEG 345

Query: 201 PIGGDLSHEFIVLADTGETQ------VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            IG      F+       T+          +  MD  +    TD  D     S       
Sbjct: 346 VIGSRCMGYFLGRISLYLTKMGIDPKYLRFRQHMDNEMAHYATDCWDAECKTSYGWVECV 405

Query: 255 PYAATSDVHNEKL-------FDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKG 304
             A  S    +           +    K   +  I   H    G  +   +  +   F  
Sbjct: 406 GCANRSCYDLKCHVKATGASLCARETLKEPISVTINEYHSSKVGKAFKGDAKKIMQYFSN 465

Query: 305 ADG----------------------------------KDHYVQMGSYGIGAM-------- 322
            D                                   K +  ++    I           
Sbjct: 466 LDNDTAEKYDKMLKDTSQIEVDIDSKKLTISEDMIAVKRYEKEIHVVDITPSVIEPSFGF 525

Query: 323 -RVVAAVIESSHDGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            R++ +++E +   +        +  P  VAP K S++ + A  +      +++ + L  
Sbjct: 526 GRILYSILEHNFRIREGDEQRSWLSLPPPVAPVKCSVLPLSAKKE-FDPYIKQLASELKL 584

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLE 432
            G     DD    IG ++A  D +G P  + V    V+++   V ++ R T  +  ++ +
Sbjct: 585 HGISNKVDDSAGSIGRRYARTDQIGIPYGITVDFDTVTNNPATVTLRERNTMQQIRLNAD 644

Query: 433 EVINYASHRFS 443
                 S    
Sbjct: 645 IAPKVVSDLVK 655


>gi|189464411|ref|ZP_03013196.1| hypothetical protein BACINT_00752 [Bacteroides intestinalis DSM
           17393]
 gi|189438201|gb|EDV07186.1| hypothetical protein BACINT_00752 [Bacteroides intestinalis DSM
           17393]
          Length = 513

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 120/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTSDGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K     L+    LG      R           H+  
Sbjct: 261 MREFEQMEMQ-FFVKPGTELDWFKKWKEIRLKWHKALGFGDDHYR----------YHDHD 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I       +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKNIKYFDPETNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 SYCEEQLESGESRVVLRLPAALAPVKLAVMPLVKKD-GLPEKAREIIDSL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAIAELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|154150976|ref|YP_001404594.1| seryl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|166222741|sp|A7I890|SYS_METB6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|153999528|gb|ABS55951.1| seryl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 425

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 12/225 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G Y            +     +   + G   +  P +   D +      D + K M +
Sbjct: 162 GAGFYFLKGGLVMLDLALQRFALDLLGKKGFTPVIPPFMIKRDSYEGVTDLDDFEKVMYK 221

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
           +   +        T E  +  +++  I   ++LP     +   FR E+        G+ R
Sbjct: 222 I---DGDDTYLIATSEHPIAAMYQDEIFEEKDLPLRLCGLSPCFRREIGAHGLDTKGLFR 278

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   + + F   PE S   + ++  +   +F +LGL    +   +G IG   +    
Sbjct: 279 VHQFTKIEQFVF-CRPENSWQIHEELLANAEEVFTKLGLPYHVVNICTGDIGTVAAKKYD 337

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            E  +  +    +V    +   +   S N    D  +  +     
Sbjct: 338 IEAWMPRENAYKEVVSCSNCTSYQAASLNIRVRDKENFETKHLVH 382


>gi|86604971|ref|YP_473734.1| seryl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123507911|sp|Q2JXL1|SYS_SYNJA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|86553513|gb|ABC98471.1| seryl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 435

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + A++ E     G  E+  P L ++     +G+   +  E  R AD +   + 
Sbjct: 174 GAALERALIAMMLERHIAAGYTEVIPPFLVNSAALEGTGQLPKFAAESFRCADDD---LW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  +     LP  F      FR E     R   G++R  +F   +  
Sbjct: 231 LIPTAEVPLTNLYREEVIPAERLPLYFCAYTPCFRREAGSYGRDTKGLIRLHQFQKVELV 290

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P  S+  + K+      I   L L    +   +G +G   +     E    +   
Sbjct: 291 KV-THPTQSEAEHEKLVQDAEAILQMLELPYRVVELCTGDLGFSAARCFDLEVWFPSQNR 349

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             ++    +  DF     N  + +     +    
Sbjct: 350 YREISSCSNCWDFQARRANLRYKEAGQKGTHFVH 383


>gi|224536479|ref|ZP_03677018.1| hypothetical protein BACCELL_01353 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521921|gb|EEF91026.1| hypothetical protein BACCELL_01353 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 513

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 120/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTSDGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K     L+    LG      R           H+  
Sbjct: 261 MREFEQMEMQFF-VKPGTELEWFKKWKEIRLKWHKALGFGDDHYR----------YHDHD 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I       +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKNIKYFDPETNESYTPFVVETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 SYCEEQLESGESRVVLRLPAALAPVKLAVMPLVKKD-GLPEKAREIIDSL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAIAELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|119897660|ref|YP_932873.1| seryl-tRNA synthetase [Azoarcus sp. BH72]
 gi|166200598|sp|A1K581|SYS_AZOSB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|119670073|emb|CAL93986.1| SerS protein [Azoarcus sp. BH72]
          Length = 430

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D E+  H  L    G+         G       GQ A     +   + + Q    G  E 
Sbjct: 133 DFEVKDHVDLGAALGLDFDTGAKLSGSRFTFMRGQIARLHRALAQFMLDTQTLEHGYTEC 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + ++ V +G+   + ++M  +    D          T E  +T+  R  I +  
Sbjct: 193 YAPYIVNREVLVGTGQLPKFKEDMFWVLRGGDEEGGEQYLISTSEIPLTNTVREQILAAD 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +     + P+ S  +  +M     
Sbjct: 253 ALPIKLTAHSPCFRSEAGSAGRDTRGMIRQHQFDKVEMVQI-VHPDASNAALEEMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 AILQKLELPYRVITLCTGDMGFSAAKTYDLEVWLPAQNTYREISSCSNCEAFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           F      N +V 
Sbjct: 372 FKTAQGKNELVH 383


>gi|145349033|ref|XP_001418945.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579175|gb|ABO97238.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 677

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 123/385 (31%), Gaps = 80/385 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-- 185
           LPF   QI   FR+E+ PR G++R REF   +   F          + ++  + L +F  
Sbjct: 265 LPFAAAQIGQSFRNEIAPRAGLLRVREFTQAEIEHFVHPEHKEHPRFAEVADTVLSLFSQ 324

Query: 186 --------------------------HRLGLKSIPMRAESGPIGGDLS---------HEF 210
                                       LG            IG D +         HE 
Sbjct: 325 DAQLGEVKKPFPMTVGEAVSKGIIANETLGYFIARCHLFLVQIGIDTNRLRFRQHLKHEM 384

Query: 211 -IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               AD  + ++ CS  +++    ++ + F D+ + +   +     Y        E + +
Sbjct: 385 AHYAADCWDAEIQCSYGWIECVGLADRSAF-DLKAHSDKSKVDLVAYERFDKPIEETVVE 443

Query: 270 SLPENK-------------RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH------ 310
             P  K               +   +     F      +   SA  +  +G+        
Sbjct: 444 ITPNKKVLGKAFKKDAKPVTDALLALSEADAFALQDACAANGSAPLQTENGEQQIAADMF 503

Query: 311 --------------YVQMGSYGIGAMRVVAAVIESSH-----DGKG--IIWPDSVAPFKI 349
                            +     G  R++  + E +      D +   +     VAP K 
Sbjct: 504 TVEKVTKTVNGRNYTPSVIEPSFGIGRIMYCMFEHAFYIRPDDEQKTVLRLTPVVAPIKT 563

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++  +  +D        ++   L+  G     D     +G ++A  D LG P  V V  +
Sbjct: 564 TIFPL-VNDDKLNAIAAEMNKMLTTNGISAKLDATAISVGKRYARTDELGVPFAVTVDHR 622

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEV 434
            V+++ V ++ R +  +  + + EV
Sbjct: 623 SVTENTVTVRERDSCGQVRVPIPEV 647



 Score = 43.4 bits (101), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 9/90 (10%)

Query: 13  ENPRDAE---IASHKLMLRTGMI-----HQHSKGIYSWLPLGQKALDNVNAIIREEQN-R 63
           E     E        L  R   I     +    G+Y + P G     NV    R+     
Sbjct: 59  EAKAKEEFRAKLGQLLEGRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVQQFWRQHFVLE 118

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
              +E+  P +    +   SG  + +   M
Sbjct: 119 ESMLEVECPAVTPEPVLRASGHVEKFTDLM 148


>gi|321441289|gb|ADW85059.1| glu- + pro-tRNA synthetase [Argyrotaenia alisellana]
          Length = 134

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   D  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPDTQEKKYVYQNSWGLT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++          A  +   D C+ +   L         D       
Sbjct: 74  GLVLPPRVADIQVIVVPCGITASTAGAEREKLMDQCKALVEELVASDIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|229032557|ref|ZP_04188522.1| Glycyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228728742|gb|EEL79753.1| Glycyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 487

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    E     +     +       LG                ++
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDL-EWFAFWRETCKNWLLSLG----------------MT 282

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 283 EESMRLRDHGEEELSH---------------YSNATTDIEFRFPFGWGELWGVASRTDFD 327

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 328 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 367

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 368 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 423

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 424 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 482

Query: 440 HRFS 443
            +  
Sbjct: 483 KKIQ 486


>gi|37198253|dbj|BAC94089.1| seryl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 447

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 17  DAEIASHKLMLRTG--MIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 147 DFELKDHVDLGEMGDGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 206

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L +AD    +G+   +GK++           D   + +   PT E  +T++ R  
Sbjct: 207 MYVPYLVNADSLFGTGQLPKFGKDLFHTEPLTEKASDEEPRKLSLIPTAEVPVTNLVRDT 266

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 267 ISDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEEL 325

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-----EFIVLADTGETQVFCSKDFMDFPI 232
                ++   L L    +   +G +G   SH     E  V A     ++    +  DF  
Sbjct: 326 TGHAEKVLQLLELPYRKVLLCTGDMGF-GSHKTYDLEVWVPAQNTYREISSCSNMWDFQA 384

Query: 233 PSENTDF 239
                 F
Sbjct: 385 RRMQARF 391


>gi|254228665|ref|ZP_04922089.1| histidyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262395117|ref|YP_003286971.1| histidyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151938844|gb|EDN57678.1| histidyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338711|gb|ACY52506.1| histidyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 422

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 140/429 (32%), Gaps = 32/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRSCIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGINE-HVRLELNSIGSQEDRADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     + ++    +    
Sbjct: 178 RTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYG 318
               +L D+      V+ R +  G  +Y  T +   +  + A      G  +   +   G
Sbjct: 238 AGLCELLDAAGIEYTVNERLV-RGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLG 296

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV 375
                 V   +      + ++  +++    +     + +    +    A  K+  +L + 
Sbjct: 297 GKPTPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQLRES 353

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V     G     QF  AD +G  + +++G   V+D+ V +K    G +E  +  E
Sbjct: 354 IPGVRVMNHFGGGNFKKQFKRADKVGAVIALVLGENEVADNTVVLKDLAGGEQETYNQAE 413

Query: 434 VINYASHRF 442
           V    +   
Sbjct: 414 VAEKIAALI 422


>gi|260494400|ref|ZP_05814531.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260198546|gb|EEW96062.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 413

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 131/416 (31%), Gaps = 55/416 (13%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+    G   D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYE-RPQAG--RQREFNQIGLEVFGEKSPKV 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +     +   +LG+  + ++     I    S E   +      + F        
Sbjct: 141 DAEVIAIG---YKFLEKLGISDLEVK-----INSVGSKESRTIYREKLIEHFSKHLDDMC 192

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR----GIEVGH 286
               +  + + +  L+  V++    Y +  ++ +    D     + V       GI+   
Sbjct: 193 DDCKDRINRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYLDVFGIKYTE 252

Query: 287 IFYF--GTKY--SLPMSA--TFKGADGK---------------DHYVQMGSYGIGAMRVV 325
                 G  Y  S          G+ G                D  +    +  G  R++
Sbjct: 253 DPTLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIM 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++  ++                  + I    +   +   KI   L      V+ D   
Sbjct: 313 M-LLGENYPKNNP------------DVYIAWLGENTSETALKIAESLRDNDIKVYIDYSE 359

Query: 386 EQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  G +     AD L     +I+G   ++   V +K   T  ++++ +EE++N   
Sbjct: 360 K--GMKSHMKKADKLSVRYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIVNQIK 413


>gi|161524637|ref|YP_001579649.1| histidyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350607|ref|YP_001946235.1| histidyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221198080|ref|ZP_03571126.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204361|ref|ZP_03577378.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221212770|ref|ZP_03585746.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|229558661|sp|A9AGZ7|SYH_BURM1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160342066|gb|ABX15152.1| histidyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334629|dbj|BAG43699.1| histidyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221166983|gb|EED99453.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221175218|gb|EEE07648.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221182012|gb|EEE14413.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 446

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 138/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   + ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFESTVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGEHLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +           A  +    + L D+   
Sbjct: 182 AHRVELIKYLEQHVDALDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDTSRA 241

Query: 274 NKRVSARGIEVGHI-FYFGTK-------YSLPMSATFKGADGKD---------------- 309
           +     R +   +I F    +       Y+L +        G                  
Sbjct: 242 HFEGLQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E +           +AP +  + +  +   D   R+  
Sbjct: 302 GGKPTAACGWAMGIERILELLKEEN-----------LAPEQEGVDVYVVHQGD-AAREQA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
                RL   G DV +    D       SQ   AD  G    VI G + V++  V +K  
Sbjct: 350 FIAAERLRDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKAL 409

Query: 421 RLTG------IREDMSLEEVINYASH 440
           R TG       ++ + +E +  +  +
Sbjct: 410 RGTGGDGEKNAQQTVPVESLTEFLIN 435


>gi|257875866|ref|ZP_05655519.1| seryl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257810032|gb|EEV38852.1| seryl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 425

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + ++     G  EM  P + ++     +G++  + +++ +LA
Sbjct: 163 FVYYKGLGARLERALYNFMLDQHVYEHGYTEMITPYIVNSQAMFGTGQFPKFKEDVFQLA 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +   +   PT E  +T+ ++  I     LP  F  +   FR E     R   G++R  
Sbjct: 223 DTD---LTLIPTAEVPLTNYYQGEILEQEQLPAYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    + S     KM  +   I  +L L    +   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-DADHSYEELEKMTANAEDILQKLNLPYRVLSLCTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + A     ++    +  DF        + D       + 
Sbjct: 339 VWIPAQEMYREISSCSNCEDFQARRAMIRYRDQEGKIHYMH 379


>gi|256028560|ref|ZP_05442394.1| histidyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289766480|ref|ZP_06525858.1| histidyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289718035|gb|EFD82047.1| histidyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 413

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 131/416 (31%), Gaps = 55/416 (13%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+    G   D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYE-RPQAG--RQREFNQIGLEVFGEKSPKV 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +     +   +LG+  + ++     I    S E   +      + F        
Sbjct: 141 DAEVIAIG---YKFLEKLGITDLEVK-----INSVGSKESRTIYREKLIEHFSKHLDDMC 192

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR----GIEVGH 286
               +  + + +  L+  V++    Y +  ++ +    D     + V       GI+   
Sbjct: 193 DDCKDRINRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYLDVFGIKYTE 252

Query: 287 IFYF--GTKY--SLPMSA--TFKGADGK---------------DHYVQMGSYGIGAMRVV 325
                 G  Y  S          G+ G                D  +    +  G  R++
Sbjct: 253 DSTLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIM 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++  ++                  + I    +   +   KI   L      V+ D   
Sbjct: 313 M-LLGENYPKNNP------------DVYIAWLGENTSETALKIAESLRDNDIKVYIDYSE 359

Query: 386 EQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  G +     AD L     +I+G   ++   V +K   T  ++++ +EE++N   
Sbjct: 360 K--GMKSHMKKADKLSVRYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIVNQIK 413


>gi|239979348|ref|ZP_04701872.1| glycyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291451223|ref|ZP_06590613.1| glycyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291354172|gb|EFE81074.1| glycyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 460

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 144/450 (32%), Gaps = 72/450 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + ++++WV SG   ++      L 
Sbjct: 33  WDYGPLGVELKENIKRQWWRYMVTSRDEVVGLDSSVILASEVWVASGHVATFSD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT-FYQIQLKFRD------ELRPRFGVM 150
           +       +   H E   +        +  LP      I            E +   G++
Sbjct: 90  ECTSCHKRFRADHLEEAYE------AKHGRLPENGLADINCPHCGNKGQFTEPKEFSGLL 143

Query: 151 RSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LGLKSIPMRAESGPIGGDL 206
            +             L PE ++  +   F    +   R    G+           +G   
Sbjct: 144 STHLGPTQDSGSIAYLRPETAQGIFTN-FAQVQQTSRRKPPFGIAQ---------MGKSF 193

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E         T+ F   +   F  P E+  + +                  +    E 
Sbjct: 194 RNEITPGNFIFRTREFEQMEMEFFVKPGEDEQWQEYWMEQRWNWYTGLGLREENMRWFEH 253

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD------- 306
             +   +    S R  ++ + F FG             T Y L   A   G D       
Sbjct: 254 PKE---KLSHYSKRTADIEYRFQFGGSEWGELEGVANRTDYDLSAHAKASGQDLSFFDQE 310

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLI 352
            G+     +     G  R + A +  ++                 + +   +AP K +++
Sbjct: 311 AGERWTPYVIEPAAGVGRAMLAFMLDAYIEDEAPNAKGKLEKRTVMRFDPRLAPVKAAVL 370

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +  + +      + + A L +   ++ +DD G  IG ++   D +G P  V V    + 
Sbjct: 371 PLSRNPE-LSPKAKGLAAALRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLD 427

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D+ V ++ R T  +E +SL+++  Y + R 
Sbjct: 428 DNAVTVRERDTMKQERVSLDQIEGYLAARL 457


>gi|218458539|ref|ZP_03498630.1| threonyl-tRNA synthetase [Rhizobium etli Kim 5]
          Length = 104

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 30/81 (37%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G +V  D   E+I  +     +   P+ ++ G K   +  V I
Sbjct: 4   SEADAYGLEVAEALREAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAEERTVNI 63

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           +   +  +  M L+  +   +
Sbjct: 64  RRLGSQDQVSMGLDAAVESLT 84


>gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300075041|gb|ADJ64440.1| histidyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 128/446 (28%), Gaps = 63/446 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     ++      G  ++  P ++   L+    G   D   KEM 
Sbjct: 14  KGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARGLGEVTDIVEKEMY 73

Query: 95  RLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N   +   P +   +      H  +Y + P   + +   FR E RP+ G  R R
Sbjct: 74  SFTDSMNGDNLTLRPENTAGVVRAALEHNLTY-DGPKRLWYVGPMFRHE-RPQRG--RYR 129

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----------GPIG 203
           +F    A +   +          M     R++  LGL  I +   S              
Sbjct: 130 QFHQVGAEAVGFSGPDIDAELIMMCQ---RLWDDLGLSDIRLELNSIGNAEERNKHRADL 186

Query: 204 GDLSHEFIVLADTGETQVFCSKD-----FMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                +   L DT   +   +         +  +         ++       +       
Sbjct: 187 IAYFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRAHFEGVQ 246

Query: 259 TSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGT--------KYSLPMSATFKGADG 307
               HN   F   P          R +        G+        +Y  P+   F G   
Sbjct: 247 KILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRY-DPLIEMFGG--- 302

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    + +G  R++           G    +  AP +  +  +   +         
Sbjct: 303 --KPTPACGFAMGVERLL-----ELMKASG----EQYAPNQCDVYLVHQGEDAQLQ-SFV 350

Query: 368 IYARLSKVGCDVFWD----DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +  RL   G DV       + G    +Q   AD  G    VI+G   +      +KH   
Sbjct: 351 LAERLRTAGLDVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKGGTATVKHMRE 410

Query: 424 GIRED-------MSLEEVINYASHRF 442
           G  E+       +  + V++Y   + 
Sbjct: 411 GNAEEGRANQNSLPFDGVVDYIVEQI 436


>gi|78047250|ref|YP_363425.1| seryl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325927384|ref|ZP_08188632.1| seryl-tRNA synthetase [Xanthomonas perforans 91-118]
 gi|123585378|sp|Q3BUY8|SYS_XANC5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78035680|emb|CAJ23371.1| seryl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325542205|gb|EGD13699.1| seryl-tRNA synthetase [Xanthomonas perforans 91-118]
          Length = 426

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++ +  +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFQ-TEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           +    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACA-PEDSDAEHQRMTRCAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|220912137|ref|YP_002487446.1| glycyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|219859015|gb|ACL39357.1| glycyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 461

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/461 (14%), Positives = 144/461 (31%), Gaps = 64/461 (13%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS---VPTLQSADLWV 81
            + + G I+  S+  + + PLG +  +N+     +     G  ++       +    +W 
Sbjct: 19  FVFQAGEIYGGSRSAWDYGPLGAELKENIKRQWWQSM-VRGREDVVGLDSSVILPKQVWE 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  D +      L +       Y   H E   +  +                  +   
Sbjct: 78  ASGHVDVFSD---PLVECLSCHKRYRADHLEEEYEEKKGRPAENGLKDIACANCGTRGEW 134

Query: 142 -ELRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIPMR 196
            E +   G++++             + EG       +   +FV++  +            
Sbjct: 135 TEPQEFSGLLKT-------YLGPVASEEGLHYLRPETAQGIFVNFNNVLTT---SRKKPP 184

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
              G IG    +E         T+ F   +   F  P  + ++        +        
Sbjct: 185 FGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHQYWMKERMAWYTGLGI 244

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFK 303
              +    E   + L    + +    ++ + F F              T + L   A   
Sbjct: 245 REENLRFFEHPLEKLSHYSKGTT---DIEYRFGFQGSEWGELEGVANRTDFDLSTHAKAS 301

Query: 304 GAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPD 342
           G D         + +   +     G  R   A +  ++                 +    
Sbjct: 302 GTDLSYFNQATNERYTPYVIEPAAGLTRSFMAFLIDAYTEDEAPNAKGGVDVRTVLKLDP 361

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFP 401
            +AP K +++ + + ++      + + A+L K    D  +DD G  IG ++   D +G P
Sbjct: 362 RLAPVKAAVLPL-SRNEALSPKAKDLGAQLRKNWNID--FDDAGA-IGRRYRRQDEIGTP 417

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + V    + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 418 FCITVDFDTLEDQAVTIRERDTMSQERVSLDKVEGYLASRL 458


>gi|167626395|ref|YP_001676895.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|189083569|sp|B0TYM9|SYS_FRAP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167596396|gb|ABZ86394.1| Serine--tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 426

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 81/237 (34%), Gaps = 19/237 (8%)

Query: 10  ILQENPRDAEIASHKLMLR-TGMIHQHSKG------IYSWLPLGQKALDNVNAIIREEQ- 61
             +E   +A+   H  +     MI   +                 K    +   + +   
Sbjct: 128 TPREFHPEAQAKDHADIGEILNMIDFKAAAKITGSRFVVLKSKIAKLHRALTQFMLDMHT 187

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+ VP + + D    +G+   + +++ +L    D      PT E  +T++ R  
Sbjct: 188 EKHGYEELYVPYMVNNDSLYGTGQLPKFSEDLFKL--EGDFEYSLIPTAEVPITNLVRDE 245

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP  +      FR E     R   G++R  +F   +     +  +G + S   +
Sbjct: 246 ILDTESLPRYYTAHTPCFRSEAGSYGRDTKGLIRQHQFEKVELVHITIADKG-EESLELL 304

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
                ++  +L L    ++  +G +G         E  + +     ++       DF
Sbjct: 305 TSHAEKVLQKLNLPYRVVKLCTGDMGFSAKKTYDLEVWIPSQNTYREISSCSWCGDF 361


>gi|238797965|ref|ZP_04641455.1| Histidyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238718170|gb|EEQ09996.1| Histidyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 424

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 136/448 (30%), Gaps = 75/448 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + +I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIESILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LILLTARWWRALGISE-HVQLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD  E  V   +  ++                    +                  D  
Sbjct: 173 ARADYREALVTFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPEVQQLLNDAPKLSDYLDEE 232

Query: 272 PENK------------------RVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
            +                        RG++     +F       G + ++     + G  
Sbjct: 233 SKQHFAGLCELLDKASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLV 292

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G+        + +G  R+V  V   + D +        A   + +I+   + Q   
Sbjct: 293 EQLGGRATPAV--GFAMGLERLVLLVQAVNADFQVP------ATVDVYVISSGQNTQS-- 342

Query: 363 DACEKIYARLSKV-----------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            A   +   L              G +V           QF  AD  G  + +++G   V
Sbjct: 343 -AAMLLAESLRDAMPTLKLMTNYGGGNVK---------KQFTRADKWGARVALMLGESEV 392

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  KV +K    G +E ++  +V    +
Sbjct: 393 AAQKVVVKDLRNGEQETLAQADVAARLA 420


>gi|239631395|ref|ZP_04674426.1| histidyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239525860|gb|EEQ64861.1| histidyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 427

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 135/431 (31%), Gaps = 42/431 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V A+ R+   +    E+  P  ++ D++  S     D 
Sbjct: 1   MNYQRPKGTADILPGQSERWQQVEAVARKIFAQYQYHEIRTPIFENVDVFSRSAGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ M   P     +   +            P+  Y +   FR E RP+
Sbjct: 61  VTKEMYTFKDKGDRMMALRPEGTAGVVRAYVENKLYGPEHAKPYKVYYLGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESG--- 200
            G  R R+F      +F             +    L       LK +        +    
Sbjct: 120 SG--RQRQFHQIGVEAFGSDSPVLDAETLALAKQLLEALGAKHLKFVINSLGDPATRKAF 177

Query: 201 ---------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P    LS +  V       ++  SKD  D  I +      D ++  +    
Sbjct: 178 HAALVDYLTPFKDQLSEDSKVRLVKNPLRILDSKDKHDQEIVANAPSILDYLTPEAQQHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFY-FGTKYSLPM-SATFKG---A 305
                         ++  ++          I EV      FG  Y+  +    + G    
Sbjct: 238 DRVKTLLQGLGIPFEVDATMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEE 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R++  +              +  P    ++ I   DQ      
Sbjct: 298 LGGPETPGIG-FAMGVERLMLLMQGEL---------PTAQP-DAYIVTI---DQGADQEA 343

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   + + G     D MG +   QF  A+     L + +G    +   V+IK+  TG 
Sbjct: 344 LQMLTAIRQQGFTGEMDYMGRKPKGQFKAANKANAKLVLTIGESERAAGTVQIKNMATGD 403

Query: 426 REDMSLEEVIN 436
           ++      V+ 
Sbjct: 404 QQAFPQANVLA 414


>gi|24214088|ref|NP_711569.1| glycyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|59798589|sp|Q8F6C0|SYG_LEPIN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|24194969|gb|AAN48587.1| glycyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 464

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 149/447 (33%), Gaps = 68/447 (15%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML----- 94
           + P G + L N+  +  +         + +    L +  +W  SG   ++   ++     
Sbjct: 40  YGPYGVELLQNLKQLWWKYFVHLREDIVGLDSSILLNPKVWEASGHVSNFNDPLIDCKNC 99

Query: 95  --------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
                    L D+  +    G T E+ M  + +    S    P                R
Sbjct: 100 KTRIRADKFLEDQKGEGFATGLTLEK-MNQVIKE---SNFACP------------NCGQR 143

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESG 200
                +R+F +    S   + E S   Y +      +F+++  +          +     
Sbjct: 144 GTFTEARDFNLMFKTSHGASAEDSLDIYLRPETAQGIFLNFKNVVST---TRRKIPFGIA 200

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            IG    +E +       T+ F   +   F  P    ++        +            
Sbjct: 201 QIGKSFRNEIMARQFVFRTREFEQMEMEFFCEPGTQKEWFSHWVNYCMNWLTEQVGIKKE 260

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD------ 306
           ++   +               IE  + F +G        T Y L     F G D      
Sbjct: 261 NLRVREHEKEELSFYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFSGEDLKYQDQ 320

Query: 307 --GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIK 355
              K +   +    +G  R+  AV+  +++ + +          +   +AP K ++  + 
Sbjct: 321 VQNKKYVPFVVEPALGVNRLFLAVVTDAYEEEKLPDGETRTVLRFSPKIAPVKAAIFPLM 380

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D    +   +I+A LSK+G ++ +DD G  IG ++   D +G P  + V    + D  
Sbjct: 381 KKD-GLPEKSREIFADLSKLG-NIEYDDGGA-IGKRYRRQDEIGTPFCITVDYDTLKDDT 437

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R +  +E +++ ++ N+   R 
Sbjct: 438 VTVRERDSMSQERIAVNQLKNWLFERL 464


>gi|319790114|ref|YP_004151747.1| seryl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317114616|gb|ADU97106.1| seryl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 427

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G K    +   + +      G  E+  P L +      +G+   + +++ ++ 
Sbjct: 166 FVVYKKWGAKLERALINFMLDLHTTEHGYQEIIPPFLVNTKTMTGTGQLPKFEEDLYKI- 224

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               + +   PT E  +T++  + I   + LP  +      FR E     R   G+MR  
Sbjct: 225 --EGEDLWLIPTAEVPLTNLHANEILPEKALPIYYTAYTPCFRKEAGAHGRDVRGIMRLH 282

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +     + PE S     K+     ++   LGL    +   +G +G   +     E
Sbjct: 283 QFNKVELVKI-VHPETSYDELEKLVKEAEKVLQLLGLHYRVVELCTGDLGFSAAKTYDIE 341

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + +     ++    +  DF        F D      +V 
Sbjct: 342 VWIPSQERYREISSCSNCEDFQARRAKIRFRDKEGKTQLVH 382


>gi|317484491|ref|ZP_07943401.1| histidyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316924267|gb|EFV45443.1| histidyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 416

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 128/408 (31%), Gaps = 36/408 (8%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEMLRLADRNDKAMIYGPTH 110
           + A+ RE  +R G  E+  P L+  +L+      ++    KEM    DR  +++   P  
Sbjct: 25  MEAVARETFSRYGFTELRTPILERTELFCRGIGTETDVVQKEMYTFPDRKGRSLTLRPEA 84

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +    +S  +     + I   FR E RP+ G  R R+F   +      +   +
Sbjct: 85  TAGVMRAYIESGRS-GDAVTKLFTIGPMFRYE-RPQKG--RMRQFHQINCECLGPSEPYA 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSKDFM 228
                 M    +R    LGLK + ++  S   P       E +    +   +    +D  
Sbjct: 141 DAELVTM---AMRFLEALGLKDLSLQLNSLGCPTCRPAYRETLRKWLSELDESALCEDCR 197

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
              + +     D  +         T      +       F+++            + H  
Sbjct: 198 RRMVTNPLRVLDCKVPSCREHTAETPKILDHNCPDCAAHFETVRRLLDAEKVPYVINHRL 257

Query: 289 YFGTKY----SLPMSATFKGAD------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
             G  Y    +  + +   GA       G+   +     G     +  A          +
Sbjct: 258 VRGLDYYTRTTFEIVSDQIGAQGTVAGGGRYDGLVEQLGGPNVSGLGFACGMERLA---L 314

Query: 339 IWPDSVA----P--FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           + P   A    P  F + L        V RDA   +   L   G           I S  
Sbjct: 315 LLPQPEAGADRPDFFTVVLT------DVARDAAYALTQALRDAGFRGEMGFSSRSIKSAM 368

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             A   G    +++G   ++   V +K+  +G +  ++  +V+     
Sbjct: 369 RQAGKSGARFCLLIGEDELAAQTVMLKNMDSGEQSSVAFADVVARLQK 416


>gi|262305749|gb|ACY45467.1| glu- + pro-tRNA synthetase [Idiogaryops pumilis]
          Length = 134

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+ G   + G  +S      F+  +  +  YV   S+G+   R +  ++    D  
Sbjct: 15  SGRAIQGGTSHHLGQNFSKMFDIVFEDPETSEKKYVFQNSWGLT-TRTIGVLVMVHADNT 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA +++ ++         +   +   + C +    L K G  V  D       
Sbjct: 74  GLVLPPMVACYQVVIVPCGITVNTSEDDRKNLYEKCREFQETLHKAGIRVHGDYRENYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|262305701|gb|ACY45443.1| glu- + pro-tRNA synthetase [Ammothea hilgendorfi]
          Length = 134

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S  +   F+    K   +    S+GI   R +  +     D  
Sbjct: 15  SGRAIQGATSHHLGQNFSKMLDIQFEDPKTKQKQFAYQNSWGIT-TRSIGVMTMVHGDNT 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A +++ ++                 + C+ ++ +L  VG  V  D       
Sbjct: 74  GLVLPPRIACYQVVIVPCGISASMAEEEKTKLLETCDTLHKKLKAVGIRVMCDTRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|291458568|ref|ZP_06597958.1| glycine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419101|gb|EFE92820.1| glycine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 476

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 106/365 (29%), Gaps = 71/365 (19%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D  D   +   T + +  +       S + LPF   QI   FR+E+ P  
Sbjct: 168 MFKTFQGVTEDAKDAVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEITPGN 227

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +             LGL    +RA          
Sbjct: 228 FTFRTREFEQMELEFF-CKPGTDLEWFQYWKDYCKNWLLTLGLPGKMLRARD-------- 278

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            K+ + F   +              +             H E  
Sbjct: 279 ---------------HDKEELSFYSKATTDLEFLFPFGWGELWGIADRTDYDLSRHQEIS 323

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                  G   S      F       +   +    +GA RV  A
Sbjct: 324 -----------------------GQDMS-----YFDDETKDHYIPYVIEPSLGADRVTLA 355

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + +          +  ++AP KI ++ +        +  EKI   LS+    
Sbjct: 356 FLCAAYDVEELEGGEERTVLRFHPAIAPVKIGVLPLSKK---LSEGAEKICTELSRRWY- 411

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V        D  V ++ R +  +  + +  +  Y 
Sbjct: 412 CEYDDRGN-IGKRYRRQDEIGTPYCVTYDFDSEEDGCVTVRERDSMQQVRLPIASLPEYF 470

Query: 439 SHRFS 443
             + S
Sbjct: 471 EEKLS 475


>gi|325130726|gb|EGC53464.1| seryl-tRNA synthetase [Neisseria meningitidis OX99.30304]
 gi|325136667|gb|EGC59267.1| seryl-tRNA synthetase [Neisseria meningitidis M0579]
 gi|325201659|gb|ADY97113.1| seryl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325208606|gb|ADZ04058.1| seryl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 431

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 80/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D +       PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKTTQYLIPTAEVTLTNTVAGSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYETLEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|254805440|ref|YP_003083661.1| Seryl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668982|emb|CBA07314.1| Seryl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|325127114|gb|EGC50069.1| seryl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 431

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYETLEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|241668826|ref|ZP_04756404.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877358|ref|ZP_05250068.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843379|gb|EET21793.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 426

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 81/237 (34%), Gaps = 19/237 (8%)

Query: 10  ILQENPRDAEIASHKLMLR-TGMIHQHSKG------IYSWLPLGQKALDNVNAIIREEQ- 61
             +E   +A+   H  +     MI   +                 K    +   + +   
Sbjct: 128 TPREFHPEAQAKDHADIGEILNMIDFKAAAKITGSRFVVLKSKIAKLHRALTQFMLDMHT 187

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+ VP + + D    +G+   + +++ +L    D      PT E  +T++ R  
Sbjct: 188 EKHGYEELYVPYMVNNDSLYGTGQLPKFSEDLFKL--EGDFEYSLIPTAEVPITNLVRDE 245

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP  +      FR E     R   G++R  +F   +     +  +G + S   +
Sbjct: 246 ILDTESLPRYYTAHTPCFRSEAGSYGRDTKGLIRQHQFEKVELVHITIADKG-EESLELL 304

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
                ++  +L L    ++  +G +G         E  + +     ++       DF
Sbjct: 305 TSHAEKVLQKLNLPYRVVKLCTGDMGFSAKKTYDLEVWIPSQNTYREISSCSWCGDF 361


>gi|86160271|ref|YP_467056.1| seryl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496947|sp|Q2IGB1|SYS_ANADE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|85776782|gb|ABC83619.1| seryl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 435

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 9/183 (4%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G    +  G  A     + +   +     G  E+  P L + +    +G+   + +++ 
Sbjct: 161 SGSRFTILKGAAARLERAIVSFFIDVHTSRGYTEILPPYLVTGETMTGTGQLPKFEEDLF 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           +    N+  M   PT E  +T++ R  I     +P ++      FR E     R   G+M
Sbjct: 221 KTT--NEPPMYLIPTAEVPVTNMHRDEIFEASAMPVSYCAFSPCFRAEAGSAGRDTRGIM 278

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R  +F   +        E S   + KM      +  RLGL        +G +G   +  +
Sbjct: 279 RQHQFHKVELVKLS-KAEESYAEHEKMLDDACEVLRRLGLHHRVSLLCTGDMGFSSAKTY 337

Query: 211 IVL 213
            + 
Sbjct: 338 DIE 340


>gi|42779094|ref|NP_976341.1| seryl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|67461814|sp|Q73FJ3|SYS_BACC1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|42735009|gb|AAS38949.1| seryl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 424

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLXNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|71803580|gb|AAX72933.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 438

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 16  QKPKGTQDILPEDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 75

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 76  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 131

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 132 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 186

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 187 SAYRQTLIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 246

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 247 AHFEA-------VKDMLEALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 299

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       + L  +    
Sbjct: 300 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDVYLAVLG--- 349

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 350 DSANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 409

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 410 KNNRSRQEVEVSFED 424


>gi|126178761|ref|YP_001046726.1| seryl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|166222743|sp|A3CTP4|SYS_METMJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|125861555|gb|ABN56744.1| seryl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 425

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 64/204 (31%), Gaps = 12/204 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G Y            +     +     G   +  P + +   +        +   M 
Sbjct: 161 AGSGFYFLKGRLALLDMALQRFAMDILVEHGYTPIIPPYMMNRAAYEGVTDLADFENVMY 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVM 150
           R+   + +      T E  M  ++   I   ++LP     +   FR E+        G+ 
Sbjct: 221 RI---DGEDEYLIATSEHPMAAMYCDEIFEEKDLPLRLAGLSPCFRREIGAHGLDTKGLF 277

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DL 206
           R  +F   + + +  TPE S   + ++  +   +F RLGL    +   +G IG       
Sbjct: 278 RVHQFHKVEQFIY-ATPEQSWDLHEELMANAEEVFQRLGLPYRIVSICTGDIGTVAAKKY 336

Query: 207 SHEFIVLADTGETQVFCSKDFMDF 230
             E  +  +    +     +   +
Sbjct: 337 DLEVWMPREERYREAVSCSNCTAY 360


>gi|113477024|ref|YP_723085.1| seryl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|122964624|sp|Q10YR2|SYS_TRIEI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|110168072|gb|ABG52612.1| seryl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 425

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 12/214 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +   + G +E+  P L ++     +G+   + +E  + A  +   + 
Sbjct: 174 GAALERAIIQFMLKRHIQVGYVEVMAPLLVNSQSLTATGQLPKFAEESFKCAADD---LW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E    +++R  I S   LP         FR E     +   G++R  +F   +  
Sbjct: 231 LIPTSEVSTMNLYRDEILSAEQLPIYHCAFTPCFRREAGAYGKDTRGLIRLHQFNKVEMV 290

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+  + K+      I   L L    +   SG +G   +     E  + +   
Sbjct: 291 KI-VHPETSEEEHQKLVADAEAILQALKLPYRILELCSGDLGFSAAKCYDLEVWLPSSGT 349

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             ++    +  DF     N  F +     +    
Sbjct: 350 YREISSCSNVKDFQARRANIRFKERNKKGTQYVH 383


>gi|327330808|gb|EGE72554.1| glycine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 506

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 119/398 (29%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 166 EEVNCPNCGNK------GQWIEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 219

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 220 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------- 266

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                  G D              Q +       +     N D 
Sbjct: 267 -----------------------GTDEEW----------HQYWIDVRTAWYTDLGINPDN 293

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 294 LRHYEHPKEKLSHYSKRTVDVEYKFGFSGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 351

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 352 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 408

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 409 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 465

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V I+ R T  ++ +S+++V  Y   + 
Sbjct: 466 TVDFDSLEDDAVTIRERDTMAQQRVSIDKVEEYLGGKL 503


>gi|50904253|gb|AAT87968.1| Histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 438

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 16  QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 75

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 76  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 131

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 132 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 186

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 187 AAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 246

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 247 AHFEA-------VKDMLEALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 299

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       + L  +    
Sbjct: 300 YDSLVGYFGGPETPGFG-FGLGLERLLMVI-----EKQGITLPIE-TEMDVYLAVLGDG- 351

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 352 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 409

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 410 KNNRSRQEVEVSFED 424


>gi|284991589|ref|YP_003410143.1| histidyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284064834|gb|ADB75772.1| histidyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 420

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 136/434 (31%), Gaps = 51/434 (11%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG +  LP   +    V   +     R G   +  P  +  +++        D   KE
Sbjct: 6   APKGTFDVLPPESERFLAVRETLTAPLRRAGYGYVETPVFEHTEVFSRGVGESTDVVTKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR  +++   P     +   F  H      LP   + +   FR E RP+ G  R 
Sbjct: 66  MYTFDDRGGRSLTLRPELTAGLMRAFIEHRLHTGALPVKLWTVGSAFRYE-RPQAG--RY 122

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R F   D  +  +           + V   + F  LGL    +   S       P   + 
Sbjct: 123 RHFTQVDMEALGVDDPALDAEVVALGV---QGFRDLGLTDFELLLTSLGDATCRPQYREQ 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              ++   D  E     +       +  +  +    +    ++    +           +
Sbjct: 180 LVTYLDKLDLDEETRRRAAINPLRVLDDKRPEVQAQLDDAPLMVDHLSDSTRAHYDAVRQ 239

Query: 267 LFDSLPENKRVSA---RGIEVG--HIFYF-------------GTKYSLPMSATFKGADGK 308
               L      +    RG++      F F             G +Y   +SA   G D  
Sbjct: 240 HLTDLGVTWTEAPRLVRGLDYYTKTTFEFVHHGLGAQSAIGGGGRY-DGLSAALGGPD-- 296

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V    Y +G  R + AV     D        +    +  ++ +    +  +    ++
Sbjct: 297 ---VSGIGYAVGVDRTLLAVQAEGLDVG------TATGVQAFVVPLG---EEAKRLAVRL 344

Query: 369 YARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             +L + G   D  +   G + G+    AD  G    V++G + +++   ++K   TG +
Sbjct: 345 VGQLREAGVSADTVYGGRGLK-GAM-KAADRSGASHVVVIGERDLAEGVGQLKDMRTGEQ 402

Query: 427 EDMSLEEVINYASH 440
             + + E+ +    
Sbjct: 403 RPVPVGELFDAVRA 416


>gi|303245826|ref|ZP_07332108.1| histidyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302492609|gb|EFL52477.1| histidyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 421

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 140/436 (32%), Gaps = 50/436 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEML 94
           KG     P        +    R   +R G  E+ VP L+  +L+        D   KEM 
Sbjct: 8   KGFADLFPPDSTVFAFIEKTARAVFSRYGYKELRVPVLERTELFARGIGEETDVVQKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR  +++   P     +        ++   L   ++     FR E RP+ G  R R+
Sbjct: 68  TFPDRKGRSLTLRPEATAGVMRALVEDGRANEGL-VKYFAYGPMFRYE-RPQKG--RMRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F   D  +              M   YLR    LGL  + +   S       P   D+  
Sbjct: 124 FHQIDVEAVGSPEPLLDAEVLLMLDQYLR---ALGLADLTVELNSLGCRQCRPAYLDVLR 180

Query: 209 EF---IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           EF   +      E  +          +  +     +  +    +     P  A       
Sbjct: 181 EFLKGMHKEQLCEDCMRRKLTNPLRVLDCKVPQCKEFTADAPKITDHLCPECAAHFATVT 240

Query: 266 KLFDSLPENKR---VSARGIE--VGHIFY-----FGTKYSLPMSATFKG----ADGKDHY 311
            + D+            RG++  V   F       G++ S+     + G      G D  
Sbjct: 241 GMLDAAGLRYTLNPRLVRGLDYYVRTTFEIVSGDIGSQSSVAGGGRYDGLVSAIGGPDVP 300

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQVCRDACEKIYA 370
               + G   M  +A +I+  ++          AP F ++++     D    D    +  
Sbjct: 301 GVGFACG---MERLALLIDKVNEP---------APDFYLAVL-----DASGLDRGLLLAQ 343

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G           + SQ   AD  G    +++G+  ++   V +K+   G +E ++
Sbjct: 344 DLRRAGFSGEAPYAARSVKSQMRAADKSGARFCLVLGTDELAAGTVVVKNMTAGGQETIN 403

Query: 431 LEEVINYASHRFSNNR 446
            + ++ +   R    +
Sbjct: 404 RDMLVAHLRARLEEAK 419


>gi|209560240|ref|YP_002286712.1| histidyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238064858|sp|B5XJ83|SYH_STRPZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|209541441|gb|ACI62017.1| Histidyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 426

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 AAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEA-------VKDMLEALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       + L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDVYLAVLGDG- 339

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 340 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQEVEVSFED 412


>gi|53711703|ref|YP_097695.1| glycyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60679942|ref|YP_210086.1| glycyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|253564239|ref|ZP_04841696.1| glycyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265765086|ref|ZP_06093361.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|52214568|dbj|BAD47161.1| glycyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60491376|emb|CAH06124.1| putative glycyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|251948015|gb|EES88297.1| glycyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263254470|gb|EEZ25904.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301161467|emb|CBW21007.1| putative glycyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 513

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 121/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +M   AD + K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 DMGSTADGSMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K     L+    LG              GD  + F 
Sbjct: 261 MREFEQMEMQFF-VRPGSELEYFKKWKEIRLKWHKALGF-------------GDDHYRFH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I       +     +H+   FD  
Sbjct: 307 ----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 AYCEEQLENGESRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMEQERVAISELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|27366222|ref|NP_761750.1| seryl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|320156734|ref|YP_004189113.1| seryl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|30173149|sp|Q8D8M6|SYS_VIBVU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|27362422|gb|AAO11277.1| seryl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|319932046|gb|ADV86910.1| seryl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 435

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 17  DAEIASHKLMLRTG--MIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGDGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L +AD    +G+   +GK++           D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNADSLFGTGQLPKFGKDLFHTEPLTEKASDEEPRKLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 255 ISDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-----EFIVLADTGETQVFCSKDFMDFPI 232
                ++   L L    +   +G +G   SH     E  V A     ++    +  DF  
Sbjct: 314 TGHAEKVLQLLELPYRKVLLCTGDMGF-GSHKTYDLEVWVPAQNTYREISSCSNMWDFQA 372

Query: 233 PSENTDF 239
                 F
Sbjct: 373 RRMQARF 379


>gi|167771139|ref|ZP_02443192.1| hypothetical protein ANACOL_02493 [Anaerotruncus colihominis DSM
           17241]
 gi|167666809|gb|EDS10939.1| hypothetical protein ANACOL_02493 [Anaerotruncus colihominis DSM
           17241]
          Length = 456

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 111/356 (31%), Gaps = 48/356 (13%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P T + +  +       + + +PF   QI   FR+E+ P  
Sbjct: 143 MFKTFQGVTEDAKSELYLRPETAQGIFVNFMNVQRTTRKKVPFGVCQIGKSFRNEITPGN 202

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F       +      +  Y R F    L S+ M  ++  +     
Sbjct: 203 FIFRIREFEQMELEFFCKPDTDLE------WFQYWRSFCENWLLSLGMTKDNMRLRDHAK 256

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    +         +     FP            +   +                E  
Sbjct: 257 EELSFYS------KATTDIEYLFPFGWGELWGIADRTDYDLGRHGEHSGKTLDYFDPETN 310

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +P     S     V   F               G D K             MR+   
Sbjct: 311 ERYVPYVVEPSLGADRVALAFLC-----DAYDEEVVGTDAKGKEDVR-----VVMRL--- 357

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                          ++AP+K  ++ +        +   KIY  L+K    V +DD G  
Sbjct: 358 -------------HPALAPYKACVLPLSKK---LAEGAGKIYETLAKE-YMVDYDDAG-S 399

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++   D +G P+ +    +  +D  V ++ R T  +E ++++ + +Y   + +
Sbjct: 400 IGKRYRRQDEIGTPVCITYDFESETDGCVTVRDRDTMAQERIAIDSLCDYLKTKIA 455


>gi|78185909|ref|YP_373952.1| glycyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|78165811|gb|ABB22909.1| glycyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 489

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 78/486 (16%), Positives = 147/486 (30%), Gaps = 74/486 (15%)

Query: 19  EIASHKLM---LRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           +   HKL+    R G I   S         + + PLG +   N+  +      R     +
Sbjct: 17  DKVMHKLVSLAKRRGFIFPSSEIYGGLSSCFDYGPLGSEMKRNIKELWWNAMTRRHQNIV 76

Query: 70  SV--PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +    + +  +W  SG   S+   M  + DR  K         E   +  R   K    
Sbjct: 77  GIDASIMMNPTVWEASGHVASFNDPM--IDDRTTKRRYRADHLIENHIEKLRRDGKDADA 134

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS---YNKMFV----- 179
           L     ++Q+ +              E ++ +      T  G       +N MF      
Sbjct: 135 L-----RVQMTYEACGASEEPNRALYELIIDEGIKAPDTGSGDWTEVRQFNLMFQCNMGA 189

Query: 180 -------SYLRIFHRLGL--KSIPMRAESGP--------IGGDLSHEF--------IVLA 214
                   YLR     G+      +R  S          IG    +E         +V  
Sbjct: 190 VADSSGVVYLRPETAQGIFVNFHNVRESSRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEF 249

Query: 215 DTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           +  E Q F           +   + +        I  +    Y      H   L   +  
Sbjct: 250 EQMEMQYFVKPGTQAEAFEAWREERYQWYTRQLGIRPEKLHWYKHDKLAHYADLAYDIKF 309

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVV 325
                   IE  H     T + L     + G +         +     +     G  R+ 
Sbjct: 310 EFPFGIEEIEGIHSR---TDFDLSRHQEYSGKNMEYVDQVTNERFIPYVVETSAGCDRLF 366

Query: 326 AAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            A++  ++            +     VAP K +++ +        +A  K+   L++   
Sbjct: 367 LAILSDAYSEDVVDGEERVVLKLAPKVAPVKAAVLPL-MKKGGMGEAAMKLRDELAES-F 424

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V +DD    IG ++   D +G P  + V  + + D  V ++ R T  +E + + +   +
Sbjct: 425 PVQYDD-AASIGKRYRRQDEIGTPFCITVDHQSIEDGTVTVRFRDTAQQERIDMSQTAAF 483

Query: 438 ASHRFS 443
            + + +
Sbjct: 484 ITAKMA 489


>gi|254718989|ref|ZP_05180800.1| seryl-tRNA synthetase [Brucella sp. 83/13]
 gi|265983979|ref|ZP_06096714.1| seryl-tRNA synthetase [Brucella sp. 83/13]
 gi|264662571|gb|EEZ32832.1| seryl-tRNA synthetase [Brucella sp. 83/13]
          Length = 427

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 176 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 232 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSV-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 291 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSTCGDFQGRRMNARY 368


>gi|329850424|ref|ZP_08265269.1| seryl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328840739|gb|EGF90310.1| seryl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 427

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 21/226 (9%)

Query: 21  ASHKLMLRTG-MIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVP 72
             H  +     M+   +     G       GQ A     +   + + Q N  G  E++ P
Sbjct: 142 KDHADLGEAMKMMDFEAAAKISGSRFVFLKGQLARLERAIGQFMLDVQTNEHGYTEVNPP 201

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L        +G+   + +++ + A    +     PT E  +T++ R  I +   LP   
Sbjct: 202 VLVKDHAMFGTGQLPKFEEDLFKTA----EPFYLIPTAEVSLTNLIREAITAEEELPLRL 257

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +   FR E     R   G++R  +F   +  S   TPE S   + +M      I  RL
Sbjct: 258 TALTNCFRAEAGSAGRDTKGMIRQHQFQKVELVSI-TTPEQSSEEHERMTGCAESILKRL 316

Query: 189 GLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
            L    M   +G +G         E  + +     ++    +  DF
Sbjct: 317 ELPYRTMLLCTGDMGFGARKTYDLEVWLPSQNTYREISSCSNCGDF 362


>gi|313897385|ref|ZP_07830928.1| glycine--tRNA ligase [Clostridium sp. HGF2]
 gi|312957755|gb|EFR39380.1| glycine--tRNA ligase [Clostridium sp. HGF2]
          Length = 460

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 119/364 (32%), Gaps = 68/364 (18%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +    A+   P   + M   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVVEDAKSAIYLRPETAQGMFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P      Y       +     LG+                S
Sbjct: 211 FIFRTREFEQMELEFF-CQPGTDMEWYQYYKDYCMSFLTNLGIN---------------S 254

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                   T E   F SK   D                 +   Q             +  
Sbjct: 255 DHLRFRDHTAEELAFYSKGTCDIE--------------YNFHSQIGWGELWGIADRTDYD 300

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E  + S   ++                        + +        +G  R++ A
Sbjct: 301 LKQHQEASKKSLEYLDPAT--------------------NEKYLAYCVEPAVGVERLMLA 340

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  ++D + +             +AP K  ++ +        D   +++  ++ VG + 
Sbjct: 341 FMCDAYDEEELENDTRIVMHLHPFLAPIKACVMPLSKK---LSDKAMEVFQLIAPVG-NC 396

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  + V  +  +D+ V ++HR +  +E +SL+++  Y  
Sbjct: 397 DYDEAG-SIGKRYRRQDAVGTPFCITVDFETENDNCVTVRHRDSMEQERVSLKDLSAYIE 455

Query: 440 HRFS 443
            R  
Sbjct: 456 ERIK 459


>gi|238794829|ref|ZP_04638430.1| Histidyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238725842|gb|EEQ17395.1| Histidyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 444

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 136/448 (30%), Gaps = 75/448 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + +I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 26  QAIRGMNDYLPADTAIWQRIESILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 85

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 86  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 141

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG        
Sbjct: 142 YRQFHQLGAEVFGLQGPDIDAE---LILLTARWWRALGISE-HVQLELNSIGS-----LD 192

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD  E  V   +  ++                    +               +  D  
Sbjct: 193 ARADYREALVTFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSEYLDEE 252

Query: 272 PENK------------------RVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
            +                        RG++     +F       G + ++     + G  
Sbjct: 253 SKQHFAGLCELLDQASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLV 312

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G+        + +G  R+V  V   + D +        A   + +I+     Q   
Sbjct: 313 EQLGGRATPAV--GFAMGLERLVLLVQAVNADFQVP------ATVDVYVISSGQDTQS-- 362

Query: 363 DACEKIYARLSKV-----------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            A   +   L              G +V           QF  AD  G  + +++G   V
Sbjct: 363 -AAMLLAENLRDAMPTLKLMTNYGGGNVK---------KQFTRADKWGARVALMLGESEV 412

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  +V +K    G +E ++  +V    +
Sbjct: 413 AAQQVVVKDLRNGEQETLAQADVAARLA 440


>gi|161486631|ref|NP_934118.2| seryl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|46577168|sp|Q7MLV2|SYS_VIBVY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 435

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 17  DAEIASHKLMLRTG--MIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGDGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L +AD    +G+   +GK++           D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNADSLFGTGQLPKFGKDLFHTEPLTEKASDEEPRKLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 255 ISDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-----EFIVLADTGETQVFCSKDFMDFPI 232
                ++   L L    +   +G +G   SH     E  V A     ++    +  DF  
Sbjct: 314 TGHAEKVLQLLELPYRKVLLCTGDMGF-GSHKTYDLEVWVPAQNTYREISSCSNMWDFQA 372

Query: 233 PSENTDF 239
                 F
Sbjct: 373 RRMQARF 379


>gi|331004983|ref|ZP_08328393.1| Seryl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330421225|gb|EGG95481.1| Seryl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 437

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 13/205 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +   N  G  E+ VP L + D    +G+   + +++ +  D  ++ + 
Sbjct: 183 ARLHRALIQFMIDVHSNEHGYQEVHVPFLVNRDSLFGTGQLPKFEEDLFKTND--ERELY 240

Query: 106 YGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
             PT E  +T++ R  +      LP         FR E     R   G++R  +F   + 
Sbjct: 241 LIPTAEVPITNLLRDELLQDDTQLPIKIVSHTPCFRSEAGSHGRDTRGMIRQHQFEKVEM 300

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            +F + P  S  +   +      I  +L L    +    G IG   +     E  V +  
Sbjct: 301 VNF-VKPSESMQALEDLTACAEAILEKLELPYRTVILCGGDIGFSSAKTYDIEVWVPSQD 359

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++     F DF        F +
Sbjct: 360 KYREISSCSSFGDFQARRMKARFRN 384


>gi|319956131|ref|YP_004167394.1| seryl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319418535|gb|ADV45645.1| seryl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 414

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +     +     G  E +VP + ++++   +G+   + +++ ++ D +   + 
Sbjct: 170 GARLQTALINFFLDRNIAAGFEEYAVPFMVNSEMLRGTGQLPKFEEDLFKVCDED---LY 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I+   I     LP         FR E     R   G++R  +F   +  
Sbjct: 227 LIPTAEVPLTNIYHDEILPAEELPVLMTAYSPCFRKEAGSAGRDTRGMIRQHQFAKVEMV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +    PE S   + KM      +   LGL    +   +G +G   
Sbjct: 287 AI-TRPEESDEIFQKMVQQASDLLTELGLPHRWVELCTGDLGFSA 330


>gi|254525907|ref|ZP_05137959.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221537331|gb|EEE39784.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 425

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGARLERALINFMLDMHTKNGYLELMPPALVNSESLKGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ +   + LP  +      FR E     +   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNELIDPKQLPIKYVAYSPCFRREAGSYGKDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ K+      I  +L L    +   +G +G   S     E  + +  
Sbjct: 289 YWF-CDPTKSLEAHKKITSDAENILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|218131906|ref|ZP_03460710.1| hypothetical protein BACEGG_03529 [Bacteroides eggerthii DSM 20697]
 gi|317474491|ref|ZP_07933765.1| glycyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|217986209|gb|EEC52548.1| hypothetical protein BACEGG_03529 [Bacteroides eggerthii DSM 20697]
 gi|316909172|gb|EFV30852.1| glycyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 513

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 117/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M              +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 197 MFTTEMGSTSEGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      +     + L+    LG      R           
Sbjct: 257 FIFRMREFEQMEMQ-FFVKPGTELDWFKTWKETRLKWHKALGFGDDHYR----------Y 305

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+   LA                             +   I       +     +H+   
Sbjct: 306 HDHDKLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTN 340

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                       K+S      F     + +   +    IG  R+  +
Sbjct: 341 FDLSQH------------------EKFSGKNIKYFDPETNESYTPYVIETSIGVDRMFLS 382

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++ +S+  + +           P ++AP K++++ +   D    +   +I   L K    
Sbjct: 383 IMSASYCEEQLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNL-KFHFH 440

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  
Sbjct: 441 CQYDE-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNII 499

Query: 439 SHRFS 443
           + R S
Sbjct: 500 ADRVS 504


>gi|166077768|gb|ABY80978.1| glutamyl-prolyl tRNA synthetase [Paramysis loxolepis]
          Length = 145

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S      F+      K  YV   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDIVFEDPSAPDKKQYVYQNSWGMT-XRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQ 387
           KG++ P  VA     ++ +    +   D       A E++   L +       D      
Sbjct: 81  KGLVLPPRVAAIHCIIMPVGITAKTTDDERLALIKAAEQLQKELVEGDVRAECDFRENVT 140

Query: 388 IGSQF 392
              +F
Sbjct: 141 PAWKF 145


>gi|72381901|ref|YP_291256.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123746309|sp|Q46LS5|SYH_PROMT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|72001751|gb|AAZ57553.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
          Length = 426

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 134/439 (30%), Gaps = 51/439 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP   +    V +I  E  +R G  E+  P ++  +L+        D  GKEM  
Sbjct: 9   GMVDLLPAQSQGWQKVESIALEHFSRAGLQEIRTPIIEQTELFSRGIGENTDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  ++    P     +      H    +  P   +     FR E RP+ G  R R+F
Sbjct: 69  FDDRGGRSCTLRPEGTASVARSIVQHGLLNK-GPQRLWYRGPMFRYE-RPQAG--RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGD---- 205
                    L    S      +          +GL  + +        E   I  +    
Sbjct: 125 HQIGVEFVGLASVISDAE---VISIAWNFLKDVGLNELTLEINSLGSNEDRNIFKEELKD 181

Query: 206 --------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY- 256
                   L  +     +    ++  SK+     + SE     D +S  S          
Sbjct: 182 WLNQRFDLLDEDSQKRINVNPLRILDSKNNSTKELLSEAPSLIDFLSNESKTRFDYLQEL 241

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQ 313
                +  E  ++ +      S    E+    + G++ ++     + G     G      
Sbjct: 242 LVNLKIPYEINYNLVRGLDYYSHTAFEI-TSDHLGSQATVCGGGRYDGLISELGGPQAPS 300

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +G + IG  R++    +     K            + +I+     +       +I  +L 
Sbjct: 301 IG-WAIGMERLIILAGDKILQSKSP---------DVYVIH---KGKKAEQLALEITCQLR 347

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE- 432
                +  D  G     QF  AD       +++G   VS  ++ +K      +++ S E 
Sbjct: 348 SSNLIIELDYSGSSFSKQFKRADKSRAKWALVIGEDEVSKGQLLMKKLRDKQKDEESREY 407

Query: 433 -----EVINYASHRFSNNR 446
                ++        +  +
Sbjct: 408 IFSKSDLDQLIKKLIAEKK 426


>gi|217316829|gb|ACK37820.1| putative glutamyl-prolyl tRNA synthetase [Euastacus spinichelatus]
          Length = 123

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           RGI+     + G  +S      F+  +  +  Y    S+G+   R +  ++    D KG+
Sbjct: 17  RGIQGATSHHLGQNFSKMFEIVFEDPETQQKQYCYQNSWGLT-TRTIGVMVMVHGDDKGL 75

Query: 339 IWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDV 379
           + P  VA  +  ++ +               DAC K+ A L+  G   
Sbjct: 76  VLPPRVASVQAIIMPVGITAKSSEQDKSSLMDACNKLAADLNAAGVRA 123


>gi|329116293|ref|ZP_08245010.1| histidine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906698|gb|EGE53612.1| histidine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 436

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 134/438 (30%), Gaps = 45/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 15  QKPKGTQDILPAEAAKWQYVEHVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVSK 74

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+  + +   P   E    + RS++++         P   Y I+  FR E RP+
Sbjct: 75  EMYDFNDKGGRHITLRP---EGTAPVVRSYVENKLFAPEVQKPLKMYYIEPMFRYE-RPQ 130

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F       F             M  +Y  +F+ LG+ ++ +   S       
Sbjct: 131 AG--RLRQFHQIGVECFGSANPAIDVETIAM--AY-DLFNALGIGNLKLSINSLGNPSSR 185

Query: 207 SHEFIVLAD---TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           +     L D     + ++           P    D  +   + ++    +       +  
Sbjct: 186 AAYRQALIDFLTPQKDKLSKDSQRRLEENPLRVLDSKEKEDIEAVKNAPSILEFLDEESQ 245

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGADGKDHYVQMGSYGIGAM 322
                     +    +  I+   +      Y+        +  D +      G Y     
Sbjct: 246 AHFDGVRDMLDMLGISYTIDTNMVRGL-DYYNHTIFEVITEIEDSELTVCGGGRYDGLVT 304

Query: 323 ----------------RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                             +  +IE      GI  P       + +  +            
Sbjct: 305 YFDGPETAAFGFGLGLERLLMIIEKL----GIELPIEEN-LDLYMAVLGDG---ANSKAL 356

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   + + G     D +G +I +QF  AD+      + +G   V   KV IK+  T   
Sbjct: 357 ELVQAIRRQGFKAERDYLGRKIKAQFKSADVFKAKAIITLGESEVEAGKVTIKNNQTRQE 416

Query: 427 EDMSLEEVINYASHRFSN 444
            +++ EE+ N  +   + 
Sbjct: 417 LEVTFEELTNDFAAVLAK 434


>gi|321441309|gb|ADW85069.1| glu- + pro-tRNA synthetase [Hemerophila felis]
          Length = 134

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPETHEKAYVYQNSWGLT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++          A       +C ++  +L         DD      
Sbjct: 74  GLVLPPRVACVQAVVVPCGITASSTPAERAALYASCTELSEQLKAANIRTEVDDRENYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|167764216|ref|ZP_02436343.1| hypothetical protein BACSTE_02601 [Bacteroides stercoris ATCC
           43183]
 gi|167698332|gb|EDS14911.1| hypothetical protein BACSTE_02601 [Bacteroides stercoris ATCC
           43183]
          Length = 513

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 117/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M              +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 197 MFTTEMGSTSEGAMKVYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      +     + L+    LG      R           
Sbjct: 257 FIFRMREFEQMEMQ-FFVKPGTELDWFKTWKETRLKWHKALGFGDDHYR----------Y 305

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+   LA                             +   I       +     +H+   
Sbjct: 306 HDHDKLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTN 340

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                       K+S      F     + +   +    IG  R+  +
Sbjct: 341 FDLSQH------------------EKFSGKNIKYFDPETNESYTPYVIETSIGVDRMFLS 382

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++ +S+  + +           P ++AP K++++ +   D    +   +I   L K    
Sbjct: 383 IMSASYCEEQLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIINDL-KFHFH 440

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  
Sbjct: 441 CQYDE-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNII 499

Query: 439 SHRFS 443
           + R S
Sbjct: 500 ADRVS 504


>gi|325288210|ref|YP_004264391.1| seryl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963611|gb|ADY54390.1| seryl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 421

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 12/207 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K   ++   + +     G  E+  P +   +    +G+   + ++  ++    
Sbjct: 164 FYKGLGAKLERSLINFMLDRHTAKGYSEIFPPFMVHRNSMFGTGQLPKFEQDAFKV---E 220

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           +      PT E  +T+++R  I     LP         FR E     R   G++R  +F 
Sbjct: 221 NTEYFLIPTAEVPVTNLYRDEILEAEKLPIRHCAYSACFRAEAGAAGRDTRGIIRQHQFN 280

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F L PE S     ++  S   I   L L    +   +G +G   +     E  +
Sbjct: 281 KVELVKFSL-PEKSYEELEELTNSAETILQELELPYRVVALSTGDMGFSSAKTYDIEVWL 339

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF 239
            +     ++    +F DF     N  F
Sbjct: 340 PSFNTYREISSCSNFEDFQARRANIRF 366


>gi|163938025|ref|YP_001642909.1| seryl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229009527|ref|ZP_04166756.1| Seryl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|229053863|ref|ZP_04195300.1| Seryl-tRNA synthetase [Bacillus cereus AH603]
 gi|229131024|ref|ZP_04259940.1| Seryl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|229165006|ref|ZP_04292804.1| Seryl-tRNA synthetase [Bacillus cereus AH621]
 gi|163860222|gb|ABY41281.1| seryl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228618458|gb|EEK75485.1| Seryl-tRNA synthetase [Bacillus cereus AH621]
 gi|228652436|gb|EEL08357.1| Seryl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228721473|gb|EEL72990.1| Seryl-tRNA synthetase [Bacillus cereus AH603]
 gi|228751738|gb|EEM01535.1| Seryl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 424

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I S   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEIVSKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|303254927|ref|ZP_07341011.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303259625|ref|ZP_07345601.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262070|ref|ZP_07348015.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303264527|ref|ZP_07350446.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303267199|ref|ZP_07353065.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|301802793|emb|CBW35567.1| histidyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302598109|gb|EFL65171.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636710|gb|EFL67200.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639177|gb|EFL69636.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302643263|gb|EFL73544.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302645897|gb|EFL76125.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 429

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 140/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     + LE +    S  F  
Sbjct: 393 RQVTVKNNQTREEVQVLLETISQNFSEIFEK 423


>gi|167747961|ref|ZP_02420088.1| hypothetical protein ANACAC_02693 [Anaerostipes caccae DSM 14662]
 gi|167652611|gb|EDR96740.1| hypothetical protein ANACAC_02693 [Anaerostipes caccae DSM 14662]
          Length = 463

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 110/364 (30%), Gaps = 71/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + +PF   Q+   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F                                  ++        
Sbjct: 215 FTFRTREFEQMELEFF-------------------------------CEPDTDLEWFAYW 243

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F +        +   +  +      E + +    S    +  +            +  
Sbjct: 244 KDFCINWLKTL-GITDDQMRVRDHGKEELSFYSKATSDIEFLFPFGWGELWGIADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                                             F     + +   +    +GA RV  A
Sbjct: 303 LTQHQNTSGEDL--------------------TYFDDEKKERYIPYVIEPSLGADRVTLA 342

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + +          +  ++AP KI ++ +        +   K+Y  L+K   +
Sbjct: 343 FLCAAYDEEELEGGDKRTVLRFHPAIAPVKIGVLPLSKK---LAEGAGKVYETLAKY-YN 398

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+ G  IG ++   D +G P  V        D  V ++ R T  +E + +E++  Y 
Sbjct: 399 CEYDERGN-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDTMEQERVKIEDLKEYF 457

Query: 439 SHRF 442
             +F
Sbjct: 458 EKKF 461


>gi|331268359|ref|YP_004394851.1| glycyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329124909|gb|AEB74854.1| glycyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 463

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 118/354 (33%), Gaps = 73/354 (20%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P T + +  +   +   S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDTTSEIYLRPETAQGIFVNFKNAQRTSRKKVPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      ++       +    LG                ++
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFHYWKDYCWKFLLDLG----------------MT 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +   D GE ++               + + +  S    +  +            +  
Sbjct: 258 EENLRFRDHGEEEL---------------SFYSNATSDIEFLFPFGWGELWGIADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
                E+                          T+      + +   +    +GA RV  
Sbjct: 303 LKKHMEHSGQ---------------------ELTYLDPTTNEKYVPYVIEPSLGADRVAL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        +   ++Y++LSK   
Sbjct: 342 AFLVDAYDEEELENGDTRTVLRLHPALAPFKAAILPLSKK---LSEKALEVYSKLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           ++ +D+ G  IG ++   D +G P  + V    + D+ V ++ R    +  +S+
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTVRDRDNMTQVRLSI 450


>gi|330840299|ref|XP_003292155.1| hypothetical protein DICPUDRAFT_7467 [Dictyostelium purpureum]
 gi|325077610|gb|EGC31311.1| hypothetical protein DICPUDRAFT_7467 [Dictyostelium purpureum]
          Length = 407

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 131/430 (30%), Gaps = 66/430 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEML 94
           KG Y + P  ++    VN I +      G  E+S P ++  +L+  S G Y D   KEM 
Sbjct: 5   KGTYDYFPNEKRVYSFVNQIGKSVSELYGYEEISTPIIEPFELFNRSVGEYSDIVMKEMF 64

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSR 153
              D + +A+   P     +     +   +    P   +Y     FR E RP+ G  R R
Sbjct: 65  TFKDLSGQAICLRPEGTAGVIRAIINEGSTTSTSPTQKYYYSGPMFRYE-RPQKG--RQR 121

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F    A     +   S      M  +Y  I  +LG+ S     +   +G   S +    
Sbjct: 122 QFEQFGAELIGDSHPRSDVEIIDM--AYHFI-EKLGIPSDQFHLKINSLGDKNSIKTYSD 178

Query: 214 ADT----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           A T    G+               +     D     +  + +             ++ F 
Sbjct: 179 ALTEFYQGKIDKLSPDSIKRLQRGNALRILDSKDKGDIEINKDAPLLQNYLSDSCKQRFK 238

Query: 270 S--LPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKGAD----------------GKD 309
           S     +       I+ G +   G  Y             +                G  
Sbjct: 239 SVLEGLDNLGIKYQIDNGLVR--GLDYYRHTIFEIIILKDNLAILGGGRYDGLANNIGYK 296

Query: 310 HYVQMGSYGIGA--MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           H   + S G  +   R+   +I  + D    I P    P  I +      +Q+  D+   
Sbjct: 297 HNEILPSIGWASGIDRI---LIYINQD----IIPKKSNPIGIVI-----GNQIFSDSAMS 344

Query: 368 IYARLSKVGCDV-----FWDDMGEQIGSQFAVADLLGF-----PLQVIVGSKFVSDSKVE 417
           + +RL K G          D+             L           VI G   +  + V 
Sbjct: 345 LCSRLRKNGFYTVLPTFKLDEENMT-------KQLKKISKFNPNFVVIFGEDEMKSNSVC 397

Query: 418 IKHRLTGIRE 427
           IK+     +E
Sbjct: 398 IKNMNERTQE 407


>gi|320200078|gb|EFW74667.1| Histidyl-tRNA synthetase [Escherichia coli EC4100B]
          Length = 424

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 47/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVTFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQVLLNDAPALGDYLDKESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R   AV  +    + ++   +V P      +  I + A     + A   +  RL      
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERL------ 351

Query: 379 VFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                  E  G +             FA AD  G  + V++G   V++    +K   +G 
Sbjct: 352 -----RDELQGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGE 406

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + V  +     
Sbjct: 407 QTAVAQDSVAAHLRTLL 423


>gi|300704413|ref|YP_003746016.1| histidyl-tRNA synthetase (histidine--tRNA ligase) [Ralstonia
           solanacearum CFBP2957]
 gi|299072077|emb|CBJ43409.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) [Ralstonia
           solanacearum CFBP2957]
          Length = 432

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 129/439 (29%), Gaps = 60/439 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 8   KGMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMY 67

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 68  SFTDSLNGEHLTLRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 123

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +              M     R++  LGL  + +          RA      
Sbjct: 124 QFHQVGVEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQAEERAAHRADL 180

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F  + D    +   +         +         +   I     A       V 
Sbjct: 181 IKYLEGFQDILDEDGKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGEASLKHFEGVQ 240

Query: 264 NEKLFDSLPE-NKRVSARGIEV-------GHIFYFGTKYSLP----MSATFKGADGKDHY 311
                +++P        RG++              G + ++          +   GK   
Sbjct: 241 ALLKANNIPYTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAP 300

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDACEK 367
                + +G  R++  + E             +AP      + +++     QV       
Sbjct: 301 A--CGWAMGVERIIELLREE-----------RLAPEPQGCDVYIVHQGDQAQVQALVA-- 345

Query: 368 IYARLSKVGCDVFWDDMGE----QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
              RL   G DV      E       SQF  AD  G    VI+G   V+    +IK  R 
Sbjct: 346 -AERLRDAGLDVILHCSPEGSNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQIKPLRG 404

Query: 423 T---GIREDMSLEEVINYA 438
                 ++ +  +++++  
Sbjct: 405 EPNADTQQTVPSDQLVDRL 423


>gi|217316807|gb|ACK37809.1| putative glutamyl-prolyl tRNA synthetase [Gramastacus gracilis]
          Length = 134

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  Y    S+G+   R +  +I    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIFEDPETQQKKYCFQNSWGLT-TRTIGVMIMVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVCR-----DACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++   I A           D+C K+ A L+  G     D   
Sbjct: 74  GLVLPPRVASVQAIIMPVGITAKSSEQDKSNLIDSCHKLVADLNAAGVRARCDTRD 129


>gi|303269709|ref|ZP_07355463.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302640742|gb|EFL71135.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS458]
          Length = 426

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 140/451 (31%), Gaps = 71/451 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   R    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPAESAKWQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P  FY +   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F  +   +      M          +G++ + +   +       
Sbjct: 120 AG--RLRQFHQIGVECFGSSNPATDVETIAMAA---HFLKEIGIQGVKLHLNTLGNPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     +    +V  SK+  D           D +   S 
Sbjct: 175 AAYRQALIDYLTPLKETLSKDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-------------GTK 293
                            +             RG++     IF F             G +
Sbjct: 235 AHFDAVRQML-------ENLGVDYIIDTNMVRGLDYYNHTIFEFITEIEGNDLTVCAGGR 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   + A F G +          +G+G  R++  +     + +G+  P   A   + +  
Sbjct: 288 Y-DGLVAYFGGPE-----TAGFGFGLGVERLLLIL-----EKQGVALPIENA-LDVYIAV 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +     V      ++   L + G     D +  ++ +QF  AD+      + +G   V  
Sbjct: 336 LGDGANV---KALELVQALRQQGFKAERDYLNRKLKAQFKSADVFAAKTLITLGESEVES 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +V +K+  T     + LE +    S  F  
Sbjct: 393 RQVTVKNNQTREEVQVLLETISQNFSEIFEK 423


>gi|262037439|ref|ZP_06010902.1| serine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261748529|gb|EEY35905.1| serine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 423

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 13/189 (6%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   ++   +G+   +  +M ++    ++ +   PT
Sbjct: 174 RALINFMLDTHTTEHGFEEIMTPQMAKREIMTGTGQLPKFEDDMYKI---EEEDLFLIPT 230

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I S   LP  +      FR E     +   G++R  +F   +     +
Sbjct: 231 AEVTLTNLHNGEILSEEELPKYYCGFTACFRKEAGSGGKDLKGIIRQHQFNKVEMVKI-V 289

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
            PE S     KM  +  RI  +L L    +   SG IG   S     E  V +     ++
Sbjct: 290 HPESSYEELEKMVSNAERILQKLELPYRVIALCSGDIGFSASKTYDIEVWVPSQDKYREI 349

Query: 222 FCSKDFMDF 230
               +  DF
Sbjct: 350 SSCSNTEDF 358


>gi|85859585|ref|YP_461787.1| seryl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85722676|gb|ABC77619.1| seryl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 448

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   + +      G  E+  P + + D    +G+   + +++ ++    +   
Sbjct: 192 GAMLERAIINFMLDLHIMEHGYTEILPPFMANRDSMTGTGQLPKFAEDLFKI---ENLEY 248

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I   + LP  +      FR E     +   G++R  +F   + 
Sbjct: 249 YLIPTAEVPVTNIHREEILEEKALPIYYVAYSPCFRAEAGSYGKDTRGLIRQHQFNKVEM 308

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             F  +PE S     K+ V+   +  RL +    +   +G +G   +  + V A
Sbjct: 309 VKF-TSPETSYDELEKLTVNAEEVLKRLNIPYRTVSLCTGDLGFSSAKTYDVEA 361


>gi|222150263|ref|YP_002559416.1| seryl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|254783034|sp|B9E909|SYS_MACCJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|222119385|dbj|BAH16720.1| seryl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 423

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 8/172 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  EM  P L +A     +G+   + +++ ++     + + 
Sbjct: 170 GARLERALMNFMLDTHRANGYEEMVTPQLVNAASMFGTGQLPKFEEDLFKV---EKEGLY 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+ +R  I +   LP  F  +   FR E     R   G++R  +F   +  
Sbjct: 227 TIPTSEVPLTNFYRDEILTNDMLPTKFTAMTACFRSEAGSAGRDTRGLIRMHQFNKVEMV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   PE S  +   M  S   I  +L +    +   SG IG   +  + V 
Sbjct: 287 RF-ERPEDSYAALEDMTRSAESILEKLNIPYRTIALCSGDIGFGAAKTYDVE 337


>gi|254302703|ref|ZP_04970061.1| histidine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322895|gb|EDK88145.1| histidine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 412

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 133/406 (32%), Gaps = 36/406 (8%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G      P  +  +L+    G   D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQKMFENYGYKFAKTPIFEETELFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              M   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASMVRCYLENSIYAKEDISRFYYNGSMFRYE-RPQAG--RQREFNQIGVEVFGEKSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 M  ++L    +LG+  + ++  S  +G   S     +      + F S      
Sbjct: 141 DAEVIAMGYNWL---AKLGVTDLEVKINS--VGSKGS---RTIYREKLVEHFKSHLDDMC 192

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
               +  + + +  L+  V+     Y +   + +    D     + V         IF  
Sbjct: 193 EDCKDRINRNPLRLLDCKVDGEKDFYKSAPSIIDYLFEDERKHYEEVKKYL----TIF-- 246

Query: 291 GTKYSL-PMSATFKGADGKDHYVQMGSYGIGAMRVVAA-----VIESSHDGKGIIWPDSV 344
           G KY+  P             +  + +       V+       +++   D     +  + 
Sbjct: 247 GIKYTEDPTLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAFGFAA 306

Query: 345 A-----------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                       P  +  I I        +   KI   L K    V+ D   + + +   
Sbjct: 307 GVERVMMLVDEYPKDVPDIYIAWLGDSTVETAMKIAEDLRKNDIKVYVDYSSKGMKAHMK 366

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            AD L     +I+G   ++   V +K   T  ++++ +EE+INY  
Sbjct: 367 KADKLETKYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIINYIK 412


>gi|146340973|ref|YP_001206021.1| seryl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|166200605|sp|A4YV70|SYS_BRASO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|146193779|emb|CAL77796.1| Seryl-tRNA synthetase (Serine--tRNA ligase) [Bradyrhizobium sp.
           ORS278]
          Length = 442

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 99/314 (31%), Gaps = 74/314 (23%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR---------LADRN 100
             +   + +      G  E++ P L   D+   +G+   +  +              +R 
Sbjct: 175 RAIGQFMLDLHTTEHGYTEVNPPLLVRNDVMFGTGQLPKFEDDQFWAVRGELLIAPDERL 234

Query: 101 DKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
               +   PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F
Sbjct: 235 KAERLGLIPTAEVALTNLVRESIVDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQF 294

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +  S   TPE SK  + +M      +  RL L    +   +G +G      + +   
Sbjct: 295 TKVELVSI-TTPETSKDEHERMLACAEEVLRRLDLHYRVITLCTGDMGFSSQKTYDIE-- 351

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                       +  P   +   F +I S +                             
Sbjct: 352 ------------VWMPGQGDGGAFREISSCSV---------------------------- 371

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHD 334
                          G   +  M A ++ +DGK  +V  +   G    R + AV+E+   
Sbjct: 372 --------------CGDFQARRMDARYRASDGKPRFVHTLNGSGTAVGRALIAVMETYQQ 417

Query: 335 GKG-IIWPDSVAPF 347
             G I  PD + P+
Sbjct: 418 ADGSIAVPDVLQPY 431


>gi|90021082|ref|YP_526909.1| histidyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|89950682|gb|ABD80697.1| histidyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 423

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 145/444 (32%), Gaps = 63/444 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        + + +     R G  E+  P L+  +L+  S G   D   K
Sbjct: 5   QALRGMNDLLPQDSPVWQYLESTVTTLFKRYGYQEIRFPILEQTELFKRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPT-------HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           EM    DRND+++   P          E    +F     + +      +     FR E +
Sbjct: 65  EMYTFKDRNDESLTLRPEGTASCVRACEQNQLLFNRGTLTQK-----LWYQGPMFRYE-K 118

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P+ G  R R+F      +F L           M     R++  LG+ S  +  +   +G 
Sbjct: 119 PQKG--RLRQFHQFGVEAFGLNGPDIDAELLIMSA---RLWKELGISS-AVELQLNSLGS 172

Query: 205 DLSHEFIVLADTGETQVFCSKDFMD---------------FPIPSENTDFDDIISLNSIV 249
                    A      V   +   +                 + S+      ++     +
Sbjct: 173 S-----DARAKFKADLVAFLEQHKERLDEDSQRRLGSNPLRILDSKEAKTQALLDEAPSL 227

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMS 299
             +    +       + L D+            RG++     +F       G++ ++   
Sbjct: 228 LDYLDDESLAHFEQLKALLDAAGVAYTINPRLVRGLDYYGKTVFEWVTTQLGSQGTVCAG 287

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV-APFKISLINIKA 356
             + G   +          +G+G  R+V  + E +      + P+ +     + ++ +  
Sbjct: 288 GRYDGLVNQLGGQPTPAVGFGMGIERLVLLLQEMN------VLPEEIFQTLDVYIMAVGD 341

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    E+I  R   +   V     G    +Q   AD  G  + +I+G   V+  +V
Sbjct: 342 VAPAAFSLAEQIRDRFPAM--RVQTHCGGGSFKNQMKKADRSGADVALILGENEVAAQEV 399

Query: 417 EIKH-RLTGIREDMSLEEVINYAS 439
            +K+ R    +  +   ++++  +
Sbjct: 400 TLKYLRKDQPQTTIKQTDLLDLLA 423


>gi|88855020|ref|ZP_01129685.1| glycyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88815548|gb|EAR25405.1| glycyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 461

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 78/478 (16%), Positives = 151/478 (31%), Gaps = 73/478 (15%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIRE--EQNRTG 65
           NP DA I    L  R G + Q     G     + + PLG    +N+     +   Q R  
Sbjct: 5   NPLDAVI---NLAKRRGFVFQSGEIYGGSRSAWDYGPLGMALKENIKKQWWQTIVQGRDD 61

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            + +    +    +W  SG  + +     E L    R     +     E+        H 
Sbjct: 62  VVGIDSAVILPRKVWEASGHVEVFSDPLVESLHTHKRYRADHLLEAYEEKH------GHP 115

Query: 123 KSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLM---KDAYSFDLTPEGSKHSYNKMF 178
                               E +   G++++  FL     +     L PE ++  +    
Sbjct: 116 PVNGLADIRDPDTGQPGSWTEPQNFSGLLKT--FLGPVDNEEGMHYLRPETAQGIFTNFA 173

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    +G   +      G +G    +E         T+ F   +   F  P  + +
Sbjct: 174 NV-------MGAARMKPPFGIGQVGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEE 226

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG------- 291
           +       S+           +    E    +  +    S R ++V + F F        
Sbjct: 227 WHQYWIDESMKWYTDLGIKPENLRFYEH---AQEKLSHYSKRTVDVEYRFRFAGSEWGEL 283

Query: 292 ------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                 T + L   +   GAD         +     +     G  R + A +  ++    
Sbjct: 284 MGIANRTDFDLRTHSEASGADLSYFDQAKDERWTPYVIEPAFGLTRALMAFLIDAYAEDE 343

Query: 338 -------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
                        +     ++P K++++ + + ++        + A L K   +V +DD 
Sbjct: 344 APNAKGGVDKRTVLRLDRRLSPVKVAVLPL-SRNERLSPLARSVAADLRKFW-NVDFDDA 401

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G  IG ++   D +G P  V +    + D+ V ++ R T  ++ M LEE+  Y +   
Sbjct: 402 GA-IGRRYRRQDEIGTPFCVTIDFDSLDDNAVTVRERDTMEQKRMPLEELRGYLAQEL 458


>gi|317967929|ref|ZP_07969319.1| seryl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 426

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 12/200 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + + LG +   ++   + +     G  E+  P L ++     SG+   + +E  R A 
Sbjct: 167 FVTLMGLGARLERSLINFMLDLHGGKGYREVLPPILVNSASLTGSGQLPKFAEESFRCA- 225

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  +     LP  +      FR E     R   G++R  +
Sbjct: 226 --EDDLWLTPTAEVPVTSLHRGEVIPADQLPLKYVAYTPCFRREAGSYGRDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F   PE S  ++ ++      +   L L    +   +G +G   +     E 
Sbjct: 284 FNKVELYWFCH-PEHSADAHQQITADAEAVLEALELPYRKIELCTGDMGFSATRTYDLEV 342

Query: 211 IVLADTGETQVFCSKDFMDF 230
            +       ++       DF
Sbjct: 343 WLPGAGAYREISSCSVCGDF 362


>gi|225016772|ref|ZP_03705964.1| hypothetical protein CLOSTMETH_00684 [Clostridium methylpentosum
           DSM 5476]
 gi|224950440|gb|EEG31649.1| hypothetical protein CLOSTMETH_00684 [Clostridium methylpentosum
           DSM 5476]
          Length = 425

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 12/207 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G +    V     +   + G  E+  P + +      +G+   + ++  RLA+ +
Sbjct: 166 FYKGAGARLERAVINFYLDTHTKNGYTEVFPPFMVNRASMTGTGQLPKFEEDAFRLANMD 225

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T+++R  I     +P  F      FR E     R   G++R  +F 
Sbjct: 226 ---YFLIPTAEVPVTNMYRDEIIDGDKIPVKFCAYSACFRAEAGSAGRDTRGLIRQHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S     K+     R+   L L    +   +G +G   +     E  +
Sbjct: 283 KVELVKF-ADPENSYEELEKLTADAERVLQLLELPYRVVCLSTGDLGFSSAKTYDIEVWL 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF 239
            +     ++    +F DF     N  F
Sbjct: 342 PSYNNYKEISSCSNFEDFQARRANIKF 368


>gi|294852237|ref|ZP_06792910.1| seryl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820826|gb|EFG37825.1| seryl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 352

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   +    +G+   + +++ R  D         PT
Sbjct: 176 RALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   + LP  F  +   FR E     R   G++R  +FL  +  S   
Sbjct: 232 AEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             E S   + +M      +  RLGL    +   +G +G
Sbjct: 291 DAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMG 328


>gi|328474881|gb|EGF45681.1| histidyl-tRNA synthetase [Listeria monocytogenes 220]
          Length = 396

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 135/404 (33%), Gaps = 48/404 (11%)

Query: 66  AIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             E+  P  +  +L+        D   KEM    D+  +++   P     +   F  H K
Sbjct: 7   YEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEH-K 65

Query: 124 SYRNL--PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            Y  +  P   Y  +  FR E RP+ G  R R+F      +              +    
Sbjct: 66  LYGEVSQPIKMYYNEPMFRYE-RPQGG--RQRQFTQMGIEALGSDDPSIDVE---VISLA 119

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLS----------------HEFIVLAD----TGETQV 221
           +  F ++GL  I ++     +G   S                 EF             ++
Sbjct: 120 MEFFRKIGL--INIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRI 177

Query: 222 FCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              K   D P I S  +  D +   +    +    Y    ++  E     +      +  
Sbjct: 178 LDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKKYLNALEIPFEIDSTMVRGLDYYNHT 237

Query: 281 GIEVGHIFY-FGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
             E+  +   FG K +L     + G     G      MG +GIG  R++ A+     +  
Sbjct: 238 TFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGMG-FGIGVERILLAL-----EKA 291

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            I  P    P ++ +I  +   ++       +  +L + G     D +  +  +Q   A+
Sbjct: 292 DIKIPAK-KPLEVYVITAQPEAEL---KAVTLVNKLRQNGISAEKDYLKRKFKAQLKDAN 347

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                  +I+G + +     ++K+  TG +E +S   ++    +
Sbjct: 348 RKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKLIN 391


>gi|229828494|ref|ZP_04454563.1| hypothetical protein GCWU000342_00556 [Shuttleworthia satelles DSM
           14600]
 gi|229793088|gb|EEP29202.1| hypothetical protein GCWU000342_00556 [Shuttleworthia satelles DSM
           14600]
          Length = 465

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 149/434 (34%), Gaps = 55/434 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     + +    L +   WV SG   S+   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFIQESPQNVGIDGAILMNPQTWVASGHLGSFSDPLMDCK 91

Query: 98  DRNDK---AMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           + +++     I     +E    +  S    S + +     +  +      +  F  +R  
Sbjct: 92  ECHERFRADKIIEDFAQEHQIVLPSSVDGWSNKEMEDWIQEHNVPCPSCGKHNFTEIR-- 149

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPIGGDLS 207
           +F +    +F    E +K++      +   IF  +  K++       +    G IG    
Sbjct: 150 QFNLM-FKTFQGVTEDAKNTVYLRPETAQGIF--VNFKNVQRTSRKKIPFGIGQIGKSFR 206

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E      T  T+ F   +   F  P  + ++           +        +  H    
Sbjct: 207 NEITPGNFTFRTREFEQMELEFFCEPGTDMEWFHYWRG---FCRDWLLSLGMNKDHIRLR 263

Query: 268 FDSLPENKRVSARGIEVGHIFYFG----------TKYSL--------PMSATFKGADGKD 309
                E    S    ++ + F FG          T Y L           + F  A  + 
Sbjct: 264 DHDKEELSFYSKGTTDIEYTFPFGWGELWGIADRTDYDLTRHQEVSGADMSYFDDAKNEK 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAH 357
           +   +    +GA RVV A +  ++D + I             +  ++AP K+ ++ +   
Sbjct: 324 YIPYVIEPSLGADRVVLAFLCEAYDEENIGTEDKPDMRTVLHFHPALAPVKVGVLPLSKK 383

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +   KIY RLSK   +  +DD G  IG ++   D +G P  V       +D  V 
Sbjct: 384 ---LAEGATKIYERLSKK-FNCEYDDRGN-IGKRYRRQDEIGTPFCVTYDFDSETDGAVT 438

Query: 418 IKHRLTGIREDMSL 431
           ++ R +  +  + +
Sbjct: 439 VRDRDSMEQVRLPI 452


>gi|251798352|ref|YP_003013083.1| histidyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545978|gb|ACT02997.1| histidyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 416

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 67/439 (15%), Positives = 130/439 (29%), Gaps = 53/439 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q S G    LP   +         R+   R    E+  P  ++ +L+        D 
Sbjct: 1   MAFQKSPGTQDILPGVVERWQYAEQKARDICRRFNFREIRTPIFEATELFQRGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR D+++   P     +   +  +           Y I   FR E R + G
Sbjct: 61  VEKEMYTFTDRGDRSITLRPEGTAGVVRSYVENKLYGEPDVSKLYYIGPMFRYE-RQQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      +              +  ++   F  +GLK + +   S  +G     
Sbjct: 120 --RYRQFHQFGIEALGSVEPAIDAEVIALGYTF---FTEVGLKGVRVEINS--VGTPA-- 170

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              V A   E  +       +       +  +         +   A + A   + +    
Sbjct: 171 ---VRAAFREKLLAFLMPMREQLCKDCQSRMERNPLRVLDCKTDQARFEAAPSILDSLDE 227

Query: 269 DSLPENKRVSARGIEVGHIFYF------GTKYSLPMSATFKGA----------------- 305
           +     ++V     ++G  F        G  Y    +  +K                   
Sbjct: 228 ECTTHFEKVKTCLSDMGIPFTINPRLVRGLDYYTHTAFEYKAEGIGAIDTIGGGGRYNGL 287

Query: 306 ----DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G D        G+G  R +  +     +             ++ +  +   +   
Sbjct: 288 VAEIGGPDQPGV--GLGLGLERTIMLLEHQQAELDN--------AHQVDVYVVALGEAAD 337

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R+    +Y  L   G     D +G ++ +Q   AD L      I+G   +   ++ +K  
Sbjct: 338 REVTRLVY-ELRTSGIRAERDYLGRKMKAQMKSADRLQARYTAILGDDELERGEIALKEM 396

Query: 422 LTGIREDMSLEEVINYASH 440
            TG +  ++L  + +    
Sbjct: 397 ATGEQRVVALASLASELKS 415


>gi|304314455|ref|YP_003849602.1| histidyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587914|gb|ADL58289.1| histidyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 427

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 132/439 (30%), Gaps = 55/439 (12%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEML 94
            +G   +L    +    V  ++R      G  E+  P  +   L+ V+SG  +    ++ 
Sbjct: 6   PRGTRDFLFAEMRNRKEVENVLRRTFETYGYHEIKTPIFEDLKLFTVKSG--EEVVNQIY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + +   P     +  ++ + ++     P   Y     FR E RP+ G  R R+
Sbjct: 64  HFTDKGGRELALRPELTAPVARLYMNEMQRE-PKPIKMYYFGSCFRYE-RPQAG--RFRQ 119

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR----------AESGPIGG 204
           F              ++     +         RLGL+   +                IG 
Sbjct: 120 FWQFGCELIGGRSPLAEAE---VITLAAESLRRLGLEGFEVHVGHLGILRGILGRENIGD 176

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-----------IVEQWT 253
           +L    + + D G+     S        P       ++I  +            +     
Sbjct: 177 ELQDRIMGIIDKGDVDELESCLDGVEISPESRDLLMNLIGTHGGPEVLNDVRGLLEGYPE 236

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDH 310
           +  A           +           GI  G  +Y G     Y   + A  +   G  +
Sbjct: 237 SLSALDEFAELVDTLEHFGLEDYHVNLGIARGLDYYTGAVFEIYVPRLGAQRQICGGGTY 296

Query: 311 YVQMGSYGIGAM---------RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            +     G             R++ A+     D +            + +I I    +  
Sbjct: 297 NLVETFGGERVESTGFAFGFDRLMNALEMDEGDMRM---------VDVFVIPI---HEST 344

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +I   +  VG     D  G ++    + AD +G    V+ G + + + KV ++  
Sbjct: 345 LPEAIRITQEIRSVGIAADMDLAGRKLRKALSHADHIGARFVVLTGERDLHEGKVTLRDM 404

Query: 422 LTGIREDMSLEEVINYASH 440
               +E +   E+++    
Sbjct: 405 EDASQEAVDRTEIVDRLKK 423


>gi|302023321|ref|ZP_07248532.1| histidyl-tRNA synthetase [Streptococcus suis 05HAS68]
          Length = 405

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 133/417 (31%), Gaps = 61/417 (14%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    R    +    E+  P  +  ++   S     D   KEM    D+ ++ +   P  
Sbjct: 1   MENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLRP-- 58

Query: 111 EEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
            E    + RS++++         P  FY +   FR E RP+ G  R R+F       F  
Sbjct: 59  -EGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYE-RPQAG--RLRQFHQIGVECFGS 114

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLS 207
               +      M  +Y   F  LG+K I +   S                   P+   LS
Sbjct: 115 NNPATDVETIAM--AYH-FFEELGIKDIRLHLNSLGNPESRAAYRQALIDYLTPLKDQLS 171

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +    +V  SK+  D           D +   S                    
Sbjct: 172 KDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESTAHFEAVKTML-------DS 224

Query: 268 FDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSATFKG---ADGKDHYVQMGSY 317
                       RG++     IF F     G   ++     + G     G       G +
Sbjct: 225 LGIAYVIDTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGRYDGLVTYFGGPETPAFG-F 283

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+G  R++  +     + +GI  P       + +  +    Q        +   + K G 
Sbjct: 284 GMGIERLILVL-----EKQGIELPLDTQ-LDVYIAVLG---QEANGGALDLVQAIRKQGF 334

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               D +  ++ +QF  AD+ G    + +G   +   +V +K+  T  + + SLE +
Sbjct: 335 RAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIESGQVVVKNNQTRSQVETSLEAL 391


>gi|169334057|ref|ZP_02861250.1| hypothetical protein ANASTE_00450 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258774|gb|EDS72740.1| hypothetical protein ANASTE_00450 [Anaerofustis stercorihominis DSM
           17244]
          Length = 466

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/449 (13%), Positives = 150/449 (33%), Gaps = 70/449 (15%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML----- 94
           + P+G   L+NV     ++  +     +++    L +  +W  SG   ++   ++     
Sbjct: 40  YGPIGTLILNNVKNAWFKKFIQECPYNVALDSAILVNPKVWEASGHLKNFNDPLMDCKNC 99

Query: 95  -------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
                  +L + + +     P           +   S   +     +  +   +  +  F
Sbjct: 100 KARFRADKLIEDDLEKKGLDP----------NADGWSNEKMEGYIEENNIVCPNCGKHDF 149

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP------ 201
             +R  +F +       +T +     Y +   +   IF    +    ++  +        
Sbjct: 150 TGIR--QFNLMFKTFQGVTEDSVNTIYLR-PETCQGIF----INFKNVQRSTRKKLPFGI 202

Query: 202 --IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +G    +E         T+ F   +   F  P +   + +           +      
Sbjct: 203 GQVGKSFRNEITPGNFIFRTREFEQMELEFFCEPKDEMKWFEYWRQYCFDFLVSLGIDKE 262

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD----- 306
           +    +   + L      +   IE  + F +G        T + L     F G D     
Sbjct: 263 NIKFRDHAKEQLSHYSNATTD-IEYNYPFGWGELWGIADRTDFDLKSHEEFSGKDMKYVD 321

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINI 354
               +  +       +GA R+   ++  ++  + +              +AP+K++++ +
Sbjct: 322 PITNEKFHPYCIEPSVGAGRLFFTLLCDNYVEETLEDGTTRNVFKLHPYLAPYKVAVLPL 381

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   ++Y++L+K    V +D+ G  IG ++   D +G P  V +      D 
Sbjct: 382 TKK---LSEEATEVYSKLAKY-FMVDYDEAGN-IGKRYRRQDEIGTPYCVTIDFDTKEDG 436

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V ++ R T  +E + ++++ +Y + +  
Sbjct: 437 AVTVRDRDTMEQERVKIDDLADYITKKVE 465


>gi|330881215|gb|EGH15364.1| seryl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 265

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ ++    +  + 
Sbjct: 9   ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKITREGEADLY 68

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 69  LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 128

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 129 QIVA-PEDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 187

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 188 YREISSCSNCGDF 200


>gi|289422591|ref|ZP_06424434.1| serine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289157163|gb|EFD05785.1| serine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 443

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 71/170 (41%), Gaps = 8/170 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    + +   ++ +  G  E+  P + + + ++ +G+   + ++M ++        
Sbjct: 190 LGARLERALLSFYMDQHSENGYTEIIPPFMANRNSFIGTGQLPKFEEDMFKI---EGLDY 246

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++ + I  + +LP         FR E     R   G++R  +F   + 
Sbjct: 247 FLVPTAEVPVTNLYNNEIVDFDSLPIKHCAYTPCFRSEAGSAGRDTRGLVRQHQFNKVEL 306

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             F + PE S      +     ++   LGL    ++  +G +G   + ++
Sbjct: 307 VKF-VKPEDSYEELESLTNDAEKMLQLLGLPYRVVKICTGDLGFTAAKKY 355


>gi|238027072|ref|YP_002911303.1| histidyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876266|gb|ACR28599.1| Histidyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 446

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 136/443 (30%), Gaps = 61/443 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A  +      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAALWEFFEATAKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDSLNGENLTMRPENTAAVVRASIEHNLLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +       +      M     R++  LGL  I +          RA      
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F    D  E             + ++N    +I      +  +    +      
Sbjct: 188 IKYLEQFADQLD--EDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDTSRAHFEG 245

Query: 264 NEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHY 311
            ++L  +            RG++     +F       G + ++     +           
Sbjct: 246 LQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKP 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL-INIKAHDQVCRDACEKIYA 370
                + +G  R++  + E             + P +  + + I    +  R+    I  
Sbjct: 306 TAACGWAMGIERILELLKEE-----------QLVPEQDGVDVYIVHQGEAAREQAFIIGE 354

Query: 371 RLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
           RL   G DV +    D  G     +     AD  G    VI+G   V++  V +K  R  
Sbjct: 355 RLRDTGLDVIFHCSAD--GASASFKSQMKRADASGAAYAVILGEDEVANGTVGVKALRGA 412

Query: 424 G------IREDMSLEEVINYASH 440
           G       ++ +++E +  +  +
Sbjct: 413 GADGEKSEQQTVTVENLTEFLIN 435


>gi|254761666|ref|ZP_05213684.1| seryl-tRNA synthetase [Bacillus anthracis str. Australia 94]
          Length = 424

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|39938613|ref|NP_950379.1| histidyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|46396583|sp|P60918|SYH_ONYPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|39721722|dbj|BAD04212.1| histidyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 422

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/441 (14%), Positives = 134/441 (30%), Gaps = 54/441 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLR 95
           KG Y  +         V   IR    +    E+  P ++   ++  +    +   KE   
Sbjct: 6   KGTYDLMSDKMVCWQKVENHIRTLFAKYHLQEIRTPIIEYRGVFDRAAQHSEMVSKETYT 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            AD+ ++ +   P     +   +  +     +    F+     FR E RP+ G  R R+F
Sbjct: 66  FADKKERFITLRPEGTAGVIRSYVENKLDKTSQLHKFFYYGPCFRYE-RPQKG--RYRQF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                     +          +  +Y  I   LG+  I ++  S  +G   ++   +   
Sbjct: 123 HQVGVEILGQSNPFLDVEVIAL--AYETI-KSLGICDITVKINS--LGCKTTYNNYLQVF 177

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                   +      P+  E  + + +   +               + +  + D+     
Sbjct: 178 KN---YLQAHYQQLCPLCQERFEKNILRIWDCKNCNNEPFLKQAPRIFDHLVEDAKVRFL 234

Query: 276 RVSARGIEVGHIFYF------GTKY--SLPMSATFKGADGKDHYVQMGSYGIGA------ 321
           +V     ++   F        G  Y         +    G  H   +G  G         
Sbjct: 235 QVLEGLKQMNVNFELCHDLVRGLDYYTHSVFEIVYNNEQG--HQAVLGGGGCYDNLVTLF 292

Query: 322 -------------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                        M  + +++ +       I P S+  F +  +    +  +       +
Sbjct: 293 GGNPSPGIGFALGMERLMSILATHSFCNKNILP-SLDAFILVSVPQFFYQGLA------L 345

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP-LQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L   G     +            A L   P   +I+G K   ++++ IK+  T  + 
Sbjct: 346 ATTLRHQGFSADLNYQFLSFSKSLKQA-LKQQPLYLLILGPKEFDNNQITIKNTDTQQQT 404

Query: 428 DMSLEEVINYASHRFSNNRPV 448
            +  ++V++Y    F NN+ +
Sbjct: 405 TILQKDVVSY----FQNNKEL 421


>gi|332670830|ref|YP_004453838.1| glycyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
 gi|332339868|gb|AEE46451.1| glycyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
          Length = 461

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 120/385 (31%), Gaps = 80/385 (20%)

Query: 82  ESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             G++       M+       + D +    +   T + +  +    +  +    PF   Q
Sbjct: 130 TKGQWTEPRDFNMMLKTYLGPVEDESGLHYLRPETAQGIFVNFKNVYTAARMRPPFGIGQ 189

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           I   FR+E+ P   + R+REF   +                                   
Sbjct: 190 IGKSFRNEITPGNFIFRTREFEQMEM---------------------------------- 215

Query: 195 MRAESGPIGGDLSHEFIVLADTGET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                         EF V   T ET  Q +       +     + D   +    +     
Sbjct: 216 --------------EFFVEPGTDETWHQYWIDTRTDWYVDLGLDRDNLRLYEHPAEKLSH 261

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLPMSATFKGADGKDH 310
            +      +           E + ++ R   ++G H  + G   S      F  A  + +
Sbjct: 262 YSKRTVDIEYRFGFQGSEWGELEGIANRTDFDLGTHSEHSGQDLSF-----FDQAKNERY 316

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAH 357
              +     G  R + A +  ++                 +     +AP K +++ + + 
Sbjct: 317 VPYVIEPAAGLTRSLMAFLVEAYAEDEAPNTKGGVDKRVVLKLDPRLAPVKAAVLPL-SR 375

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++        + A L +   +V +DD G  IG ++   D +G P  + V    + D  V 
Sbjct: 376 NEQLSPKARDLAAELRRSW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVT 433

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           I+HR    +E ++L++V  Y +   
Sbjct: 434 IRHRDDMSQERVALDKVTGYLAQHL 458


>gi|262305793|gb|ACY45489.1| glu- + pro-tRNA synthetase [Stenochrus portoricensis]
          Length = 134

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+ G   + G  +S      ++  +  +  YV   S+G+   R +  +I    D  
Sbjct: 15  SGRAIQGGTSHHLGQNFSKMFEIIYEDPETNEKKYVFQNSWGLT-TRTIGVMIMLHGDNT 73

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA +++ ++       +  +        C++    L+  G  V  D       
Sbjct: 74  GLVLPPRVALYQVVIVPCGITASLSEEGKNDLINKCKEFETVLTSAGIRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|268680375|ref|YP_003304806.1| seryl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618406|gb|ACZ12771.1| seryl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 414

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 76/207 (36%), Gaps = 12/207 (5%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +   + +     G  E++VP + + +  + +G+   +  ++ ++   + + +   PT 
Sbjct: 175 RALINYMLDFNRSRGFHEVAVPYIVNRETLMGTGQLPKFEDDLFKI---DGEELFLIPTA 231

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T++FR  I S   LP         FR E     +   G++R  +F   +  S   T
Sbjct: 232 EVPVTNLFRDEILSKEELPLKMTAYSACFRKEAGSAGKDTRGMIRQHQFDKVELVSI-TT 290

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVF 222
           PE S+  + +M      +   LGL    +    G +G   +     E  +       ++ 
Sbjct: 291 PEQSETVFEEMLSCASDLLSSLGLPHRHLMLCGGDLGFSAAKTVDLEVWLPGQNRYREIS 350

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIV 249
              +  DF        F D      + 
Sbjct: 351 SVSNTFDFQARRAKIRFKDEGKNRLVH 377


>gi|218768704|ref|YP_002343216.1| seryl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|30173212|sp|Q9JT77|SYS_NEIMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|121052712|emb|CAM09055.1| seryl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|319410937|emb|CBY91332.1| seryl-tRNA synthetase (serine-tRNA ligase; SerRS) [Neisseria
           meningitidis WUE 2594]
          Length = 431

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 80/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D +       PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKTTQYLIPTAEVTLTNTVAGSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYETLEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|146329531|ref|YP_001209428.1| histidyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|146233001|gb|ABQ13979.1| histidyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 426

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 132/435 (30%), Gaps = 56/435 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP      + +   I  + ++ G +   +P L+   L+  +     D   KEM  
Sbjct: 11  GMRDILPPESDLREQLMDKIHHKLHQFGYLPADLPLLEKTALFQRTIGSETDVVTKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR+++++   P              ++ +      Y     FR E RP+ G  R R+F
Sbjct: 71  FLDRSEESVTLRPEATAGAVRAIIEQGRAQQV--QRLYVEGAMFRYE-RPQKG--RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG------------ 203
                 SF +           +      +F  LGL S+ +R E   IG            
Sbjct: 126 SQVSVESFGVKSAAQDVE---LIQLAYELFQELGLISL-VRLELNTIGLPEERQLFQKDL 181

Query: 204 --------GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                    +L  +     +T   ++  SKD              D +   S        
Sbjct: 182 VAYLQNHRQELDEDSQRRLETNPLRILDSKDPQVQACLDAAPALLDYLGSESQQHFEQVT 241

Query: 256 Y-------AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--AD 306
                       +    +  D                     G + ++     + G    
Sbjct: 242 TLLNALDIPWRLNPRLVRGLDYYCHTVFEW-------TTDALGAQSAVCAGGRYDGLVEQ 294

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                     +  G  R++  ++E +      IW     P    +I   A   +      
Sbjct: 295 LGGAATPAAGFAFGVDRILL-LLEQNA-----IWQAR-RPLIYMVIASFAEQAMAMQWAA 347

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+  +       V  +D  + + +QF  AD  G    ++ G +   + +V  K   +G +
Sbjct: 348 KLRQQFPDDAI-VLHNDY-QSLKNQFKKADKSGADFVLVFGEQERENQQVNCKDLQSGAQ 405

Query: 427 EDMSLEEVINYASHR 441
                +E++ Y + +
Sbjct: 406 HCFGFDELVAYLTAQ 420


>gi|187924517|ref|YP_001896159.1| histidyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|229558663|sp|B2SXS9|SYH_BURPP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|187715711|gb|ACD16935.1| histidyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 446

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/448 (15%), Positives = 133/448 (29%), Gaps = 71/448 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFKRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLMGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E      K        ++   + + + +           A  +    + L +    
Sbjct: 182 AHRVELIAHLEKHMDVLDEEAKRRLYTNPLRVLDTKNPAMQEVAQNAPKLIDFLGEESRA 241

Query: 274 NKRVSARGIEVGHIFYF-------GTK-YSLPMSATFKGADGKD---------------- 309
           +     R ++  +I +        G   Y+L +        G                  
Sbjct: 242 HFEGLQRILKANNIPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E             + P      +  +   D   R+  
Sbjct: 302 GGKPTAACGWAMGIERILELLKEE-----------QLVPEDEGCDVYVVHQGD-AAREQA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             I  RL   G DV      D  G+    +     AD  G    V++G   +++  V +K
Sbjct: 350 FIIAERLRDTGLDVILHCSAD--GQTASFKSQMKRADASGAAFAVVLGEDEIANGTVGVK 407

Query: 420 -HRLT------GIREDMSLEEVINYASH 440
             R T        ++++  E++  +  +
Sbjct: 408 PLRDTNANGGKNEQQNVPAEDLTEFLIN 435


>gi|120554056|ref|YP_958407.1| histidyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|120323905|gb|ABM18220.1| histidyl-tRNA synthetase [Marinobacter aquaeolei VT8]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 10/198 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V + +R    + G  E+ +P ++  +L+  S G   D   K
Sbjct: 5   QAIRGMNDILPDQTPVWQYVESTVRRVLGQYGYQEIRMPVVEHTELFKRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   +       +     FR E RP+ G  R
Sbjct: 65  EMYTFEDRNGDSLTLRPEGTAGCVRAAEEHGLLFNQT-RRLWYTGPMFRHE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F +           + +   R++  LGL     R E   IG   S +  
Sbjct: 121 YRQFHQIGVECFGMAGPDIDAE---LLILTARLWSALGLSD-HARLEINSIGTSDSRKVY 176

Query: 212 VLADTGETQVFCSKDFMD 229
             A     + +  K   D
Sbjct: 177 RQALVAYLEQYQDKLDDD 194


>gi|329934676|ref|ZP_08284717.1| glycyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329305498|gb|EGG49354.1| glycyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 460

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/446 (14%), Positives = 142/446 (31%), Gaps = 64/446 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++      L 
Sbjct: 33  WDYGPLGVELKENIKRQWWRYMVTSREDVVGLDSSVILATEVWVASGHVATFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSY--RNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
           +       +   H E   +  + H  +    +L       +  F  E +   G++ +   
Sbjct: 90  ECTSCHKRFRADHLEEAYEEKKGHAPANGLADLNCPNCGNKGTF-TEPKQFSGLLSTHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG----LKSIPMRAESGPIGGDLSHEF 210
                     L PE ++            IF   G                +G    +E 
Sbjct: 149 PTQDSGSVAYLRPETAQ-----------GIFTNFGQVQQTSRRKPPFGIAQMGKSFRNEI 197

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P E+  + +               +  +    E   + 
Sbjct: 198 TPGNFIFRTREFEQMEMEFFVKPGEDEKWQEYWMEQRWNWYRGLGLSEENMRWYEHPKE- 256

Query: 271 LPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKD 309
             +    S R  ++ + F FG             T Y L   +   G D        G+ 
Sbjct: 257 --KLSHYSKRTADIEYRFQFGGSEWGELEGVANRTDYDLSAHSKASGQDLSYFDQEAGER 314

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
               +     G  R + A +  ++                 +     +AP K++++ +  
Sbjct: 315 WTPYVIEPAAGVGRTMLAFLLDAYVEDEAPNAKGKMEKRTVLRLDPRLAPVKVAVLPLSR 374

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           + +      + +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V
Sbjct: 375 NPE-LSPKAKGLAQALRQ-NWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAV 431

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++ R +  +E +SL+++  Y   R 
Sbjct: 432 TVRERDSMKQERVSLDQIEGYLGSRL 457


>gi|317490870|ref|ZP_07949306.1| histidyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920417|gb|EFV41740.1| histidyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 143/450 (31%), Gaps = 71/450 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + A +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPEDTALWQPIEAALKQVLTSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSF-----DLTPE----------------------------GSKHSYNKMF 178
            R+F    A  F     D+  E                             ++ +Y    
Sbjct: 122 YRQFHQLGAEVFGLNGPDVDAELILLTARWWRALGISEHVSLELNSIGSLEARANYRDAL 181

Query: 179 VSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           V+YL  F     +    R  S P  +    + E   L +          +          
Sbjct: 182 VAYLEQFKDKLDEDCKRRMYSNPLRVLDSKNPEVQALLNDAPRLSEYLDEESREHFAGLC 241

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              DD     ++ E+        +    E + +SL     V A G   G +   G     
Sbjct: 242 QLLDDAGIAYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLVAQLG----- 296

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                     G         + +G  R+V  V   + D           P +   + + +
Sbjct: 297 ----------GHATPAV--GFAMGLERLVLLVQAVNPDF---------QPQRAVDVYLIS 335

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSD 413
             +  + A  ++  ++      V         G    QFA AD  G  + +++G   ++ 
Sbjct: 336 SGEGTQSAAMRLAEKIRDAYPQVKLM-TNYGGGNFKKQFARADKWGARIALVLGENEMNA 394

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ +K+  +G ++ ++ ++V    +   +
Sbjct: 395 GQINVKNLQSGDQQTIAQDDVAAILASMLA 424


>gi|228898770|ref|ZP_04063054.1| Seryl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228860862|gb|EEN05238.1| Seryl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|229074077|ref|ZP_04207126.1| Seryl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|229094737|ref|ZP_04225745.1| Seryl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229100803|ref|ZP_04231621.1| Seryl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|229113691|ref|ZP_04243128.1| Seryl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228669757|gb|EEL25162.1| Seryl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228682610|gb|EEL36669.1| Seryl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228688675|gb|EEL42545.1| Seryl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228709040|gb|EEL61164.1| Seryl-tRNA synthetase [Bacillus cereus Rock4-18]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|255543218|ref|XP_002512672.1| glycyl-tRNA synthetase, putative [Ricinus communis]
 gi|223548633|gb|EEF50124.1| glycyl-tRNA synthetase, putative [Ricinus communis]
          Length = 686

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 109/388 (28%), Gaps = 80/388 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-- 185
           LPF   QI   FR+E+ PR G++R REF + +   F    + S   Y ++      +F  
Sbjct: 279 LPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKYTEVADLEFLMFPR 338

Query: 186 -------------------------HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                                      LG     +      +G D            E  
Sbjct: 339 EEQMSGQSAKRIRLGEAVSKGIVNNETLGYFIGRVYLFLIRLGIDKERLRFRQHLANEMA 398

Query: 221 VFCSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAPYAATSDVHNEKLF----DSLP 272
            + +  +      S          D  + +      +  +       +            
Sbjct: 399 HYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSVSTFFFKQLKDRSILFRWESNIMNC 458

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSA--------------------------TFKGAD 306
              +   R + +   F    K ++ M A                          T     
Sbjct: 459 WLLKNLTRMLILHCKFAMNEKEAMEMKASLETKGEVEFYVCTLEKNVTIKKNMVTISKEK 518

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------------IIWPDSVAPFKISLI 352
            K+H        I     +  +I    +                   +P  VAP K ++ 
Sbjct: 519 KKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYMRPSKAGDEQLNVFRFPPVVAPIKCTVF 578

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +  + Q   +  + I   L+  G     D  G  IG ++A  D LG P  + V     S
Sbjct: 579 PLVQNQQY-EEVAKVISRSLTAAGISHKIDITGTSIGKRYARTDELGVPFAITVD----S 633

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASH 440
            S V I+ R +  +  +++EE  +    
Sbjct: 634 TSSVTIRERDSKDQIRVNIEEAASVVKS 661



 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMI-----HQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTG 65
           +E  R A +  + L  R   I     ++   G+Y + P G     NV A  R+       
Sbjct: 76  REAFRQAVV--NTLERRLFYIPSFKIYRGVAGLYDYGPPGCSVKSNVLAFWRQHFVLEEN 133

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +E+  P +    +   SG  D +   M  + D  
Sbjct: 134 MLEVDCPCVTPEIVLKASGHVDKFTDLM--VKDEK 166


>gi|196041939|ref|ZP_03109226.1| serine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196027194|gb|EDX65814.1| serine--tRNA ligase [Bacillus cereus NVH0597-99]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|206972683|ref|ZP_03233623.1| seryl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228950564|ref|ZP_04112700.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229067780|ref|ZP_04201099.1| Seryl-tRNA synthetase [Bacillus cereus F65185]
 gi|229077289|ref|ZP_04209972.1| Seryl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229176616|ref|ZP_04304022.1| Seryl-tRNA synthetase [Bacillus cereus 172560W]
 gi|206732403|gb|EDZ49585.1| seryl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228606846|gb|EEK64261.1| Seryl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228706012|gb|EEL58317.1| Seryl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228715333|gb|EEL67190.1| Seryl-tRNA synthetase [Bacillus cereus F65185]
 gi|228809107|gb|EEM55590.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|194335210|ref|YP_002017004.1| glycyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307687|gb|ACF42387.1| glycyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 491

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/481 (14%), Positives = 148/481 (30%), Gaps = 66/481 (13%)

Query: 19  EIASHKLM---LRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           +   HKL+    R G I   S         + + PLG +   N+  +      R     +
Sbjct: 17  DKVMHKLVSLAKRRGFIFPSSEIYEGLSSCFDYGPLGSEMKRNIKELWWNSMTRRHQNIV 76

Query: 70  SV--PTLQSADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHE------------- 111
            +    + +  +W  SG   S+   M+       R     +     E             
Sbjct: 77  GLDASIMMNPRVWEASGHVASFNDPMIDDKTTKRRYRADHLIENHIEKLRRDGKEEELLR 136

Query: 112 -EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
            +   +       S R L        +K +D     +     R+F +    +     + S
Sbjct: 137 VQSAYEAVAGAEDSNRALYDIIIAEGIKAQDTGSGDWT--EVRQFNLMFQCNMGAVADKS 194

Query: 171 K------HSYNKMFVSYLRIFHR------LGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   +   +FV++  +          G+  I     +  + G+     +V  +  E
Sbjct: 195 NIVYLRPETAQGIFVNFHNVRESSRMKVPFGIAQIGKAFRNEIVKGNFIFR-MVEFEQME 253

Query: 219 TQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            Q F           +   + F    S   + ++    Y      H   L   +      
Sbjct: 254 MQYFVKPGTQAEAFEAWREERFAWYTSALGLRKEKLHWYKHDKLAHYADLAYDIKFEFPF 313

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVI 329
               IE  H     T + L     + G +         + +   +     G  R+  A++
Sbjct: 314 GIEEIEGIHSR---TDFDLKQHQEYSGKNMEYIDQLTNERYLPYVVETSAGCDRLFLALL 370

Query: 330 ESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             ++            +     VAP K +++ +        +    +   LS     V +
Sbjct: 371 ADAYTEDTVDGDERVVLKLSPKVAPIKAAVLPL-MKKCGMGEMASLLREELSAAHL-VQY 428

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++   D +G P  + V  + + ++ V +++R T  +E + +  V  + + +
Sbjct: 429 DDAG-SIGKRYRRQDEIGTPFCITVDHQSLEENSVTVRYRDTATQERIEISRVREFLASK 487

Query: 442 F 442
            
Sbjct: 488 L 488


>gi|261417513|ref|YP_003251195.1| seryl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319765171|ref|YP_004130672.1| seryl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261373970|gb|ACX76713.1| seryl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317110037|gb|ADU92529.1| seryl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + +++  L 
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYEEVLPPYLVNRASMIGTGQLPKFAEDVFHL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             + +     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 222 --DSEDYFLIPTAEVPVTNLHRDEILAADDLPIYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+      I  RLGL    +   +G +G   +  + + 
Sbjct: 280 QFNKVELVKF-VKPEDSYDELEKLTRQAETILQRLGLPYRVVALCTGDLGFSAAKTYDIE 338


>gi|52145196|ref|YP_081631.1| seryl-tRNA synthetase [Bacillus cereus E33L]
 gi|67461705|sp|Q63HF6|SYS_BACCZ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|51978665|gb|AAU20215.1| serine--tRNA ligase (seryl-tRNA synthetase) [Bacillus cereus E33L]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|30018290|ref|NP_829921.1| seryl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|218233674|ref|YP_002364867.1| seryl-tRNA synthetase [Bacillus cereus B4264]
 gi|228918967|ref|ZP_04082348.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228956457|ref|ZP_04118255.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229039921|ref|ZP_04189687.1| Seryl-tRNA synthetase [Bacillus cereus AH676]
 gi|229107702|ref|ZP_04237340.1| Seryl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229125533|ref|ZP_04254567.1| Seryl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229142822|ref|ZP_04271266.1| Seryl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|229148425|ref|ZP_04276683.1| Seryl-tRNA synthetase [Bacillus cereus m1550]
 gi|296500850|ref|YP_003662550.1| seryl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|46577219|sp|Q81JC4|SYS_BACCR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701388|sp|B7HII5|SYS_BACC4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|29893830|gb|AAP07122.1| Seryl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|218161631|gb|ACK61623.1| serine--tRNA ligase [Bacillus cereus B4264]
 gi|228635034|gb|EEK91605.1| Seryl-tRNA synthetase [Bacillus cereus m1550]
 gi|228640636|gb|EEK97022.1| Seryl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228657917|gb|EEL13721.1| Seryl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228675742|gb|EEL30948.1| Seryl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228727411|gb|EEL78602.1| Seryl-tRNA synthetase [Bacillus cereus AH676]
 gi|228803214|gb|EEM50034.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228840682|gb|EEM85942.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296321902|gb|ADH04830.1| seryl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|30260206|ref|NP_842583.1| seryl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47525268|ref|YP_016617.1| seryl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183051|ref|YP_026303.1| seryl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49478185|ref|YP_034372.1| seryl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65317479|ref|ZP_00390438.1| COG0172: Seryl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|118475790|ref|YP_892941.1| seryl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|165873234|ref|ZP_02217845.1| seryl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167635026|ref|ZP_02393343.1| seryl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167641731|ref|ZP_02399974.1| seryl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170688939|ref|ZP_02880141.1| seryl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170707501|ref|ZP_02897954.1| seryl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177655686|ref|ZP_02937011.1| seryl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190569337|ref|ZP_03022229.1| seryl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196036387|ref|ZP_03103784.1| seryl-tRNA synthetase [Bacillus cereus W]
 gi|196047691|ref|ZP_03114895.1| seryl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218901218|ref|YP_002449052.1| seryl-tRNA synthetase [Bacillus cereus AH820]
 gi|225862069|ref|YP_002747447.1| seryl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227812690|ref|YP_002812699.1| seryl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228912755|ref|ZP_04076404.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228925270|ref|ZP_04088368.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931519|ref|ZP_04094427.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943823|ref|ZP_04106210.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229089148|ref|ZP_04220432.1| Seryl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229119679|ref|ZP_04248942.1| Seryl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229159191|ref|ZP_04287217.1| Seryl-tRNA synthetase [Bacillus cereus R309803]
 gi|229182411|ref|ZP_04309664.1| Seryl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229194407|ref|ZP_04321212.1| Seryl-tRNA synthetase [Bacillus cereus m1293]
 gi|229600591|ref|YP_002864668.1| serine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254686605|ref|ZP_05150464.1| seryl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254724158|ref|ZP_05185943.1| seryl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254737007|ref|ZP_05194712.1| seryl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744205|ref|ZP_05201886.1| seryl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751196|ref|ZP_05203235.1| seryl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|301051753|ref|YP_003789964.1| seryl-tRNA synthetase [Bacillus anthracis CI]
 gi|46577221|sp|Q81W25|SYS_BACAN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461763|sp|Q6HPZ8|SYS_BACHK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166200600|sp|A0R891|SYS_BACAH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701386|sp|B7JJC8|SYS_BACC0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783003|sp|C3P9G2|SYS_BACAA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783004|sp|C3LIY9|SYS_BACAC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783005|sp|C1ES19|SYS_BACC3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|30253527|gb|AAP24069.1| serine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47500416|gb|AAT29092.1| seryl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176978|gb|AAT52354.1| seryl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49329741|gb|AAT60387.1| serine--tRNA ligase (seryl-tRNA synthetase) [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118415015|gb|ABK83434.1| seryl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|164711032|gb|EDR16598.1| seryl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167510285|gb|EDR85688.1| seryl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167529500|gb|EDR92250.1| seryl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170127497|gb|EDS96371.1| seryl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170667163|gb|EDT17924.1| seryl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172080026|gb|EDT65126.1| seryl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190559559|gb|EDV13552.1| seryl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|195991017|gb|EDX54988.1| seryl-tRNA synthetase [Bacillus cereus W]
 gi|196021476|gb|EDX60179.1| seryl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218539339|gb|ACK91737.1| seryl-tRNA synthetase [Bacillus cereus AH820]
 gi|225785776|gb|ACO25993.1| serine--tRNA ligase [Bacillus cereus 03BB102]
 gi|227004875|gb|ACP14618.1| serine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228589063|gb|EEK47076.1| Seryl-tRNA synthetase [Bacillus cereus m1293]
 gi|228601057|gb|EEK58624.1| Seryl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228624272|gb|EEK81072.1| Seryl-tRNA synthetase [Bacillus cereus R309803]
 gi|228663770|gb|EEL19347.1| Seryl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228694189|gb|EEL47868.1| Seryl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228815847|gb|EEM62081.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228828137|gb|EEM73863.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834384|gb|EEM79923.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846882|gb|EEM91885.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229264999|gb|ACQ46636.1| serine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|300373922|gb|ADK02826.1| seryl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
 gi|324324006|gb|ADY19266.1| seryl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|294782755|ref|ZP_06748081.1| histidine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294481396|gb|EFG29171.1| histidine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 412

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 130/408 (31%), Gaps = 40/408 (9%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + +E     G      P  +  DL+    G   D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQEMFENYGYKFAKTPIFEETDLFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              M   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASMVRCYLENSIYAKEDVSRFYYNGSMFRYE-RPQAG--RQREFNQIGVEVFGEKSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 M         +LG+  + ++  S  +G   S     +      + F S      
Sbjct: 141 DAEVIAMG---YNFLTKLGITDLEVKINS--VGSKGS---RTIYREKLVEHFQSHLDDMC 192

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
               +  + + +  L+  V+     Y +   + +    D     + V         IF  
Sbjct: 193 EDCKDRINRNPLRLLDCKVDGDKDFYKSAPSIIDYLFEDERKHYEEVKKYL----TIF-- 246

Query: 291 GTKYSL-PMSATFKGADGKDHYVQMGSYGIGAMRVVAA-----VIESSHDGKGIIWPDSV 344
           G K++  P             +  + +       V+       +++   D     +  + 
Sbjct: 247 GVKFTEDPTLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAFGFAA 306

Query: 345 A-----------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-- 391
                       P  +  + I        +   KI   L K    V+ D   +  G +  
Sbjct: 307 GVERVMMLVEDYPKDVPDVYIAWLGDDTIETAMKIAETLRKNNAKVYVDYSSK--GMKSH 364

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              AD L     +I+G   ++   V +K   T  ++++ +EE+IN+  
Sbjct: 365 MKKADKLETKYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIINHIK 412


>gi|255010000|ref|ZP_05282126.1| glycyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313147793|ref|ZP_07809986.1| glycyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313136560|gb|EFR53920.1| glycyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 513

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 120/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +M   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 DMGSTADGAMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K     L+    LG              GD  + F 
Sbjct: 261 MREFEQMEMQFF-VRPGSELEYFKKWKEIRLKWHKALGF-------------GDDHYRFH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I       +     +H+   FD  
Sbjct: 307 ----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 AYCEEQLENGESRIVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMEQERVAISELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|187928153|ref|YP_001898640.1| histidyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|187725043|gb|ACD26208.1| histidyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 450

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 130/437 (29%), Gaps = 56/437 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 26  KGMNDLLPADAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMY 85

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 86  TFTDALNGEQLTMRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 141

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +              M     R++  LGL  + +          RA      
Sbjct: 142 QFHQVGVEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQAEERAAHRADL 198

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F  + D  E             + ++N    D+ +    +  +    +      
Sbjct: 199 IKYLEGFQDVLD--EDGKRRLYTNPLRVLDTKNPALQDMAAGAPKLLDYLGDESRAHFEG 256

Query: 264 NEKLFDSLPEN---KRVSARGIEV-------GHIFYFGTKYSLP----MSATFKGADGKD 309
            +KL  +            RG++              G + ++          +   GK 
Sbjct: 257 VQKLLKANNIPFIINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKP 316

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R    +IE   + K            + +++     QV         
Sbjct: 317 APA--CGWAMGVER----IIELLREEK---LEPEAQGCDVYIVHQGDEAQVQALIA---A 364

Query: 370 ARLSKVGCDVFWDD----MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT- 423
            RL   G DV              SQF  AD  G    VI+G   V+    +IK  R   
Sbjct: 365 ERLRDAGLDVILHASPEGRNGSFKSQFKRADASGASYAVIIGDDEVTQGVAQIKPLRGDP 424

Query: 424 --GIREDMSLEEVINYA 438
               ++ +  +++++  
Sbjct: 425 TADAQQTVPSDQLVDRL 441


>gi|226360355|ref|YP_002778133.1| glycyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|226238840|dbj|BAH49188.1| glycyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 468

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/447 (14%), Positives = 149/447 (33%), Gaps = 64/447 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +   ++WV SG    +     E L
Sbjct: 39  WDYGPLGVELKENIKKQWWRNMVTSREDVVGLDSSVILPREVWVASGHVGVFNDPLVECL 98

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRD-ELRPRFGVM 150
               R+ +  +     E       +  + +  ++P             +  E R    ++
Sbjct: 99  NCHKRHRQDHLQEAYAE-------KKGLDNPDDVPMDVVGCPDCGTVGQWTEPRDFNMML 151

Query: 151 RSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           ++    ++       L PE ++     +FV++  +               G IG    +E
Sbjct: 152 KTYLGPVESEEGMHYLRPETAQ----GIFVNFANVLTT---SRKKPPFGIGQIGKSFRNE 204

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                    T+ F   +   F  P E+ ++        +           +    E   D
Sbjct: 205 ITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDYRMDWYTGLGINKDNLRLYEHAQD 264

Query: 270 SLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GK 308
              +    S R +++ + F+F              T + L   +   G D        G+
Sbjct: 265 ---KLSHYSKRTVDIEYRFHFQGSEWGELEGVANRTDFDLSTHSKHSGTDLNYYDQASGE 321

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIK 355
            +   +     G  R + A +  ++                 +     +AP K +++ + 
Sbjct: 322 RYTPYVIEPAAGLTRSLMAFLVDAYTEDEAPNAKGGVDKRTVLRLDRRLAPVKAAVLPL- 380

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + +       + + A L +   +V +DD G  IG ++   D +G P  + V    + D  
Sbjct: 381 SRNADLTPKAKDLAATLRQHW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDHA 438

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R +  +E ++L++V  Y + R 
Sbjct: 439 VTVRERDSMAQERVALDQVEGYLAQRL 465


>gi|229170865|ref|ZP_04298470.1| Seryl-tRNA synthetase [Bacillus cereus MM3]
 gi|228612600|gb|EEK69817.1| Seryl-tRNA synthetase [Bacillus cereus MM3]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|207723165|ref|YP_002253564.1| histidyl-trna synthetase (histidine--trna ligase)(hisrs) protein
           [Ralstonia solanacearum MolK2]
 gi|207743443|ref|YP_002259835.1| histidyl-trna synthetase (histidine--trna ligase)(hisrs) protein
           [Ralstonia solanacearum IPO1609]
 gi|206588359|emb|CAQ35322.1| histidyl-trna synthetase (histidine--trna ligase)(hisrs) protein
           [Ralstonia solanacearum MolK2]
 gi|206594840|emb|CAQ61767.1| histidyl-trna synthetase (histidine--trna ligase)(hisrs) protein
           [Ralstonia solanacearum IPO1609]
          Length = 423

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 130/433 (30%), Gaps = 60/433 (13%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR- 99
           LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM    D  
Sbjct: 5   LPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYSFTDSL 64

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N + +   P            H   Y + P   +     FR E RP+ G  R R+F    
Sbjct: 65  NGEQLTLRPEGTAAAVRAVIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYRQFHQVG 120

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIGGDLSHE 209
             +              M     R++  LGL  + +          RA           +
Sbjct: 121 VEALGFAGPDIDAEVILMCQ---RLWDDLGLVGLKLELNSLGQAEERAAHRADLIKYLED 177

Query: 210 FIVLAD--------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           F  + D        T   +V  +K+     + +      D +   S+           ++
Sbjct: 178 FQDILDEDSKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGEASLKHFEGVQALLKAN 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP----MSATFKGADGKDHYVQMGSY 317
                +   L          +        G + ++          +   GK        +
Sbjct: 238 NIPYTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPA--CGW 295

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDACEKIYARLS 373
            +G  R    +IE   + K       +AP      + +++     QV          RL 
Sbjct: 296 AMGVER----IIELLREEK-------LAPEPQGCDVYIVHQGDQAQVQALVA---AERLR 341

Query: 374 KVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT---GI 425
             G DV      +       SQF  AD  G    VI+G   V+    +IK  R       
Sbjct: 342 DAGLDVILHCSPEGRNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQIKPLRGEPNADT 401

Query: 426 REDMSLEEVINYA 438
           ++ +  +++++  
Sbjct: 402 QQTVPSDQLVDRL 414


>gi|218895153|ref|YP_002443564.1| seryl-tRNA synthetase [Bacillus cereus G9842]
 gi|228937319|ref|ZP_04099967.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228963114|ref|ZP_04124285.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228970205|ref|ZP_04130866.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228976775|ref|ZP_04137189.1| Seryl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|226701387|sp|B7IS31|SYS_BACC2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218545743|gb|ACK98137.1| seryl-tRNA synthetase [Bacillus cereus G9842]
 gi|228782937|gb|EEM31101.1| Seryl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228789506|gb|EEM37424.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228796570|gb|EEM44007.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228822344|gb|EEM68324.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326937809|gb|AEA13705.1| seryl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|294497108|ref|YP_003560808.1| glycyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|295702473|ref|YP_003595548.1| glycyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294347045|gb|ADE67374.1| glycyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294800132|gb|ADF37198.1| glycyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 460

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 115/353 (32%), Gaps = 53/353 (15%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   Q+   FR+E+ P  
Sbjct: 152 MFKTHQGVTETSTNEIYLRPETAQGIFVNFKNVQRSMRKKLPFGIGQVGKSFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N    +  +    LG+K   +R        +LS
Sbjct: 212 FTFRTREFEQMELEFF-CKPGTELEWFNYWKETCNKWLLSLGMKEENVRL-RDHDDDELS 269

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H      D              FP            +   + +           V  E  
Sbjct: 270 HYSNATTD----------FEYKFPFGWGELWGVASRTDYDLKQHMEHSGEDFQYVDQETN 319

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +P     S  G +   + Y    Y           DG    V               
Sbjct: 320 ERYVPYCIEPSL-GADRVTLAYMIDAYEEE-----TLEDGSSRTVMQ------------- 360

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                          ++APFK +++ +        +    ++  L+K    + +DD G  
Sbjct: 361 ------------LHPALAPFKAAVLPLSKK---LSNEARAVFEDLAKY-FMIDYDDAG-S 403

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           IG ++   D +G P  +      + D++V I++R T  ++ +++ ++ N    
Sbjct: 404 IGKRYRRHDEIGTPFCITFDFDSLEDNQVTIRNRDTMEQKRVAISDLKNIIEE 456


>gi|292670501|ref|ZP_06603927.1| serine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647911|gb|EFF65883.1| serine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 423

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 74/222 (33%), Gaps = 13/222 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +        + +    + G  EM  P + + D  + +G+   + ++M +L 
Sbjct: 162 FMFYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNEDSMIGTGQLPKFAEDMFKL- 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E   T+  R  I     LP  +      FR E     R   G++R  
Sbjct: 221 --DGLDYYLVPTAEVPTTNYHRDEILEAEQLPEYYTSYTACFRAEAGSAGRDTRGLIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F +TPE S     +M  +   +   L L    ++  +G +    +     E
Sbjct: 279 QFNKVELIKF-VTPETSWDELERMVEAAEDVLKILELPYRVIQLCTGDMSFTSAKTYDLE 337

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             + A     ++    +  D+     N  +            
Sbjct: 338 VWMPAQNKYREISSCSNCTDYQARRANIKYRPERGAKPAFLH 379


>gi|307729250|ref|YP_003906474.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307583785|gb|ADN57183.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 446

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 135/442 (30%), Gaps = 59/442 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      D     ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWDFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSH--EF 210
           +F      +       +      M     R++  LGL  I +   S G      +H  E 
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAQERAAHRVEL 187

Query: 211 IVLADT-----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           I   +       E             + ++N    ++      +  +    +       +
Sbjct: 188 IAYLEKHMDVLDEDAKRRLYTNPLRVLDTKNPALQEVAQNAPKLIDFLGEESRAHFEGLQ 247

Query: 266 KLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHYVQ 313
           ++  +            RG++     +F       G + ++     +             
Sbjct: 248 RILKANNIPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKATA 307

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
              + +G  R++  + E             + P      +  +   D   R+    I  R
Sbjct: 308 ACGWAMGIERILELLKEE-----------QLVPEDEGCDVYVVHQGD-AAREQAFIIAER 355

Query: 372 LSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT- 423
           L   G DV      D  G+    +     AD  G    V++G   +++  V +K  R T 
Sbjct: 356 LRDTGLDVILHCSAD--GQSASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTN 413

Query: 424 -----GIREDMSLEEVINYASH 440
                  + ++  E++  +  +
Sbjct: 414 ANGGKNEQHNVPAEDLTEFLIN 435


>gi|270264728|ref|ZP_06192993.1| histidyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270041411|gb|EFA14510.1| histidyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 140/428 (32%), Gaps = 45/428 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPEDTALWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFNQLGVEVFGLQGPDIDAE---LILLTARWWKALGISE-HVNLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK---LF 268
             A     +        D      +     + S N  V+         S+  +E+    F
Sbjct: 178 RDALVAFLEQHKDTLDEDCKRRMYSNPLRVLDSKNPEVQALLNDAPRLSEYLDEESKAHF 237

Query: 269 DSLP----------ENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
           D L                  RG++     +F       G + ++     + G      G
Sbjct: 238 DGLCELLSQAGIPYTINERLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACE 366
           +        + +G  R+V  V E + D K        A   + +I+  A  Q       E
Sbjct: 298 RATPAV--GFAMGLERLVLLVQEVNPDFKAP------ATIDVYVISSGAGAQSAAMQLAE 349

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +     ++     +     +   Q   AD  G  + +I+G   V+  +V +K   +G +
Sbjct: 350 NVRDAAPQLKLMTNYGGGNFK--KQITRADKWGARVALILGENEVAAQQVVVKDLRSGEQ 407

Query: 427 EDMSLEEV 434
           E ++  EV
Sbjct: 408 ETLAQSEV 415


>gi|321441341|gb|ADW85085.1| glu- + pro-tRNA synthetase [Tinea columbariella]
          Length = 134

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+GI   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIYDDPETQEKKYVFQNSWGIT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHD-----QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++   I A+      +  + +CE +   L   G     D       
Sbjct: 74  GLVLPPRVAAVQVIVVPCGITANSTAEDRENLKKSCEALVKELVDAGVRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|217316867|gb|ACK37839.1| putative glutamyl-prolyl tRNA synthetase [Discias sp. AT-2008]
          Length = 134

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  +  +  +    S+G+   R +  ++    D KG+
Sbjct: 17  RAIQGATSHHLGQNFSKMFDIVFEHPETQQKQFCYQNSWGLT-TRTIGVMVMVHGDNKGL 75

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           + P  VA  +  ++         +       DAC+K+   L   G     D   
Sbjct: 76  VLPPRVAAVQAIIMPCGVTAKITEQEKBNLYDACKKLEEELKCAGIRARCDLRD 129


>gi|111018230|ref|YP_701202.1| glycyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|110817760|gb|ABG93044.1| glycine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 463

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/447 (14%), Positives = 149/447 (33%), Gaps = 64/447 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +   ++WV SG    +     E L
Sbjct: 34  WDYGPLGVELKENIKKQWWRNMVTSREDVVGLDSSVILPREVWVASGHVGVFNDPLVECL 93

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRD-ELRPRFGVM 150
               R+ +  +     E       +  + +  ++P             +  E R    ++
Sbjct: 94  NCHKRHRQDHLQEAYAE-------KKGLDNPDDVPMDVVACPDCGTVGQWTEPRDFNMML 146

Query: 151 RSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           ++    ++       L PE ++     +FV++  +               G IG    +E
Sbjct: 147 KTYLGPVESEEGMHYLRPETAQ----GIFVNFANVLTT---SRKKPPFGIGQIGKSFRNE 199

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                    T+ F   +   F  P E+ ++        +           +    E   D
Sbjct: 200 ITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDYRMDWYTGLGINKDNLRLYEHAQD 259

Query: 270 SLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GK 308
              +    S R +++ + F+F              T + L   +   G D        G+
Sbjct: 260 ---KLSHYSKRTVDIEYRFHFQGSEWGELEGVANRTDFDLSTHSKHSGTDLNYYDQATGE 316

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIK 355
            +   +     G  R + A +  ++                 +     +AP K +++ + 
Sbjct: 317 RYTPYVIEPAAGLTRSLMAFLVDAYTEDEAPNAKGGVDKRTVLRLDRRLAPVKAAVLPL- 375

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + +       + + A L +   +V +DD G  IG ++   D +G P  + V    + D  
Sbjct: 376 SRNADLTPKAKDLAATLRQHW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDHA 433

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R +  +E ++L++V  Y + R 
Sbjct: 434 VTVRERDSMAQERVALDQVEGYLAQRL 460


>gi|320530062|ref|ZP_08031132.1| seryl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320137495|gb|EFW29407.1| seryl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 437

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 13/199 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    V +G+   + ++M +L   
Sbjct: 178 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNESSMVGTGQLPKFAEDMFKL--- 234

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 235 EGLDYYLVPTAEVPTTNYHRDEILDAAQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 294

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F +TPE S      M  +   +   L L    ++  +G +    +     E  
Sbjct: 295 NKVELIKF-VTPETSWDELESMVEAAEDVLRTLELPYRVIQLCTGDMSFTSAKTYDLEVW 353

Query: 212 VLADTGETQVFCSKDFMDF 230
           + A     ++    +  D+
Sbjct: 354 MPAQNKYREISSCSNCTDY 372


>gi|317499137|ref|ZP_07957414.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893550|gb|EFV15755.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 462

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 154/443 (34%), Gaps = 52/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     + +    L +   WV SG   ++   ++   
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFIQESPYNVGIDAAILMNPQTWVASGHLGNFSDPLMDCK 91

Query: 98  DRNDKAMI------YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           + +++         Y   H   +     +  K         + +          +     
Sbjct: 92  ECHERFRADKLIEDYMQEHGMEIEGSVDAWSKEEMESFINEHDVVCPTC----GKKNFTE 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPIGGD 205
            R+F +    +F    E +K++      +   IF  +  K++       +    G IG  
Sbjct: 148 IRQFNLM-FKTFQGVTEDAKNTVYLRPETAQGIF--VNFKNVQRTSRKKIPFGIGQIGKS 204

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +E      T  T+ F   +   F  P ++ ++ +      I    T           +
Sbjct: 205 FRNEITPGNFTFRTREFEQMELEFFCEPDKDLEWFEYWKNYCINWLQTLGIKEDEMRVRD 264

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMS--------ATFKGADGKD 309
              + L    + ++  IE    F +G        T Y L             F   + + 
Sbjct: 265 HEKEELSHYSKATSD-IEFMFPFGWGELWGIADRTDYDLTQHQNTSGEDLTYFDDVNKER 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +      
Sbjct: 324 YIPYVIEPSLGADRVTLAFLCSAYDEEELEGGDTRTVLHFHPALAPVKIGILPLSKK--- 380

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+Y  L+K   +  +D+ G  IG ++   D +G P  V      + D  V ++ 
Sbjct: 381 LSDGAMKVYEELAKE-YNCEFDERGN-IGKRYRRQDEIGTPYCVTFDFDSLEDGAVTVRD 438

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E + +E +  Y + +F+
Sbjct: 439 RDTMEQERVKIENLKAYFAEKFA 461


>gi|228905813|ref|ZP_04069712.1| Seryl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228853821|gb|EEM98579.1| Seryl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|229188301|ref|ZP_04315352.1| Seryl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228595169|gb|EEK52937.1| Seryl-tRNA synthetase [Bacillus cereus ATCC 10876]
          Length = 424

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|315149220|gb|EFT93236.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0012]
          Length = 433

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 140/435 (32%), Gaps = 51/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +E     D +  
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYL-N 230

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVG-HIFYFGTKYSLPMSATF 302
                 + A       +      DS         +    E+       G + ++     +
Sbjct: 231 EPSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRY 290

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G     G       G +G+G  RV   ++    +   I    +++     ++ I +   
Sbjct: 291 NGLVEELGGPDTPGFG-FGMGIERV---LLTMEAEEVVI---PALSELDAYVVGIGSETN 343

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V   A  ++   +   G     D M  +  +QF  AD L   L + +G   +++  V +K
Sbjct: 344 V---AALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVK 400

Query: 420 HRLTGIREDMSLEEV 434
              T   +   L  +
Sbjct: 401 SMATREEKSFPLSAI 415


>gi|318040473|ref|ZP_07972429.1| seryl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 424

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 12/200 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G +    +   + +     G  E+  P L ++     SG+   + +E  R A 
Sbjct: 167 FVTLLGQGARLERALINFMLDLHGGKGYREVLPPILVNSASLTGSGQLPKFAEESFRCA- 225

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  +     LP  +      FR E     R   G++R  +
Sbjct: 226 --EDDLWLTPTAEVPVTSLHRDEVIPAEQLPLKYVAYTPCFRREAGSYGRDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F   P+ S  ++ ++      +   L L    +   +G +G   +     E 
Sbjct: 284 FNKVELYWFCH-PDHSAEAHQQITADAEAVLEALELPYRKIELCTGDMGFSAARTYDLEV 342

Query: 211 IVLADTGETQVFCSKDFMDF 230
            +       ++       DF
Sbjct: 343 WLPGAGAYREISSCSVCGDF 362


>gi|309775526|ref|ZP_07670526.1| glycine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916620|gb|EFP62360.1| glycine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 460

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 119/364 (32%), Gaps = 68/364 (18%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +    A+   P   + M   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVVEDAKSAIYLRPETAQGMFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P      Y       +     LG+                S
Sbjct: 211 FIFRTREFEQMELEFF-CQPGTDMEWYQYYKDFCMSFLTNLGIN---------------S 254

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                   T E   F SK   D                 +   Q             +  
Sbjct: 255 EHLRFRDHTPEELAFYSKGTCDIE--------------YNFHSQIGWGELWGIADRTDYD 300

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E  + S   ++                        + +        +G  R++ A
Sbjct: 301 LKQHQEASKKSLEYLDPAT--------------------NEKYLAYCVEPAVGVERLMLA 340

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  ++D + +             +AP K  ++ +            ++++ ++ +G + 
Sbjct: 341 FMCDAYDEEELENDTRIVMHLHPFLAPIKACVMPLSKK---LSSKAMEVFSMIAPIG-NC 396

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  + V  +  +D+ V ++HR +  +E +SL+E+  Y  
Sbjct: 397 DYDEAG-SIGKRYRRQDAVGTPFCITVDFETENDNCVTVRHRDSMEQERVSLDELSAYIE 455

Query: 440 HRFS 443
            R  
Sbjct: 456 ERIK 459


>gi|313838644|gb|EFS76358.1| glycyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
          Length = 506

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 119/398 (29%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 166 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 219

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 220 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------- 266

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                  G D              Q +       +     N D 
Sbjct: 267 -----------------------GTDEEW----------HQYWIDVRTAWYTDLGINPDN 293

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 294 LRHYEHPKEKLSHYSKRTVDVEYKFGFSGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 351

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 352 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVVKLDPRL 408

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 409 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 465

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V I+ R T  ++ +S+++V  Y   + 
Sbjct: 466 TVDFDSLEDDAVTIRERDTMAQQRVSIDKVEEYLGGKL 503


>gi|308389806|gb|ADO32126.1| seryl-tRNA synthetase [Neisseria meningitidis alpha710]
          Length = 431

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYETLEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRLKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385


>gi|72382646|ref|YP_292001.1| seryl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123620933|sp|Q46JN0|SYS_PROMT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|72002496|gb|AAZ58298.1| seryl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
          Length = 426

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
            ++   + +   + G +E+  P L +      SG+   + +E  R AD +   +   PT 
Sbjct: 178 RSLINFMLDLHIKKGYLEVLPPALVNTASLTGSGQLPKFAEESFRCADDD---LWLTPTA 234

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T + R  I     LP  +      FR E     R   G++R  +F   + Y F  T
Sbjct: 235 EVPITSLHRGEIIPRDLLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFS-T 293

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVF 222
           PE S+ +  ++      +   L L    ++  +G +G         E  +       ++ 
Sbjct: 294 PERSEDALEQITSDAESVLQELELPYRVIQLCTGDLGFSAKKTYDLEVWLPGANTFREIS 353

Query: 223 CSKDFMDF 230
              +  DF
Sbjct: 354 SCSNCGDF 361


>gi|67906698|gb|AAY82781.1| predicted glycyl-tRNA synthetase [uncultured bacterium
           eBACred22E04]
          Length = 323

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 109/336 (32%), Gaps = 50/336 (14%)

Query: 105 IYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++ I S  R+LPF   QI   FR+E+ PR  + R REF   +   F
Sbjct: 17  YLRPETAQQIYINFKNVIDSTSRSLPFGIAQIGKSFRNEITPRNFIFRVREFEQMELEFF 76

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
               E                +H+  +    +   +  I  D      V   TG+     
Sbjct: 77  VTPGEDDD-------------WHKKWVDERLVWWVNQGIPKDKLELLHV---TGDDLAHY 120

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           SK  +D                  I+ Q+         + N   FD     K      I+
Sbjct: 121 SKSTVD------------------IMYQFPHGLEELEGIANRTDFDLGSHTKNQKDLNID 162

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK------- 336
              +       S       +    +     +     G  R V A+I  ++  +       
Sbjct: 163 AKVM----ENESSNTRLAVQNESKEWIVPYVIEPSAGVDRGVLAIINEAYTIEDLGDNKQ 218

Query: 337 --GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFA 393
              +     ++P K ++I +K ++         +   L K     V  ++ G  IG  + 
Sbjct: 219 RTLLKLKKHLSPIKAAVIPLKRNNDDLVKLAHDVKTSLQKFQIGRVVVENTGN-IGKSYR 277

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             D +G PL + +    +  + V I+ R +  +  +
Sbjct: 278 KHDEIGTPLCITIDFDSLEKNTVTIRDRDSMEQRVL 313


>gi|15677532|ref|NP_274688.1| seryl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|30173214|sp|Q9JY95|SYS_NEIMB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|7226938|gb|AAF42032.1| seryl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|316984831|gb|EFV63788.1| seryl-tRNA synthetase [Neisseria meningitidis H44/76]
 gi|325140853|gb|EGC63363.1| seryl-tRNA synthetase [Neisseria meningitidis CU385]
 gi|325199722|gb|ADY95177.1| seryl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 431

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYETLEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRLKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385


>gi|126654927|ref|ZP_01726461.1| histidyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126623662|gb|EAZ94366.1| histidyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 433

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 137/440 (31%), Gaps = 52/440 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
            G    LP        V +I  +  +R    E+  P  +   L+    G   D  GKEM 
Sbjct: 8   PGTRDILPEEIGYWQYVESIATQILSRAMYYEIRPPIFEQTSLFERGIGEATDVVGKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             +DR D+++   P     +   +  +           +     FR E RP+ G  R R+
Sbjct: 68  TFSDRGDRSLTLRPEGTAGVVRAYLQNNLYAAGGVQRLWYCGPMFRYE-RPQAG--RQRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F              +      +      I   LGL+S+  + +   +G           
Sbjct: 125 FHQIGLELIGTADPRADVE---VIALATDILKTLGLQSL--KLDINSVG----------- 168

Query: 215 DTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-----EKL 267
           D  + Q +       F       + D  D +  N +    +          N     E L
Sbjct: 169 DRNDRQRYREALVNYFLPYKEELDPDSQDRLQRNPLRILDSKDKRTKEINENAPSILEHL 228

Query: 268 FDSLPEN-----KRVSARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHY 311
            D+  ++     + +S  GIE         G  Y         S  + A      G  + 
Sbjct: 229 GDASKKHFDQVQQLLSDLGIEYNINPCLVRGLDYYTHTAFEMISDDLGAQATVCGGGRYD 288

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA--PFKISLINIKAHDQVCRDACEKIY 369
             +   G  A   V   I      + II    +   P     I + +  +        + 
Sbjct: 289 GLVEELGGNATPAVGWAIGM---ERLIILLKQLQSSPEMTPDIYLVSRGEAAEGQGLILA 345

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L K G  V  D  G   G QF  AD  G    +++G +   +  +++K   +  ++ M
Sbjct: 346 QKLRKEGLTVELDMSGSAFGKQFKRADRSGAIACIVLGEEEAENKTMQLKWLQSKEQQAM 405

Query: 430 SLEEVINYA---SHRFSNNR 446
           +  E+         +   ++
Sbjct: 406 TQAELFTKVGELKEQLDRHK 425


>gi|29349019|ref|NP_812522.1| glycyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571164|ref|ZP_04848571.1| glycyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|298386727|ref|ZP_06996282.1| glycine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|29340926|gb|AAO78716.1| glycyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839117|gb|EES67201.1| glycyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|298260401|gb|EFI03270.1| glycine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 513

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 121/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTSDGAMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K     L+    LG              GD S+ + 
Sbjct: 261 MREFEQMEMQFF-VKPGTELDWFKKWKEIRLKWHKALGF-------------GDASYRYH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I       +     +H+   FD  
Sbjct: 307 ----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 AYCEEQLENGESRVVLKLPAALAPVKLAVMPLIKKD-GLPEKAREIIDAL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPFCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|212637862|ref|YP_002314382.1| seryl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212559342|gb|ACJ32397.1| Seryl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +    + G  E+  P + +      +G+   + ++  R+ 
Sbjct: 165 FVFYKGLGARLERALINFMLDVHVEQHGYEEVLPPYIVNRASMTGTGQLPKFEEDAFRIE 224

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 225 SED---YFLIPTAEVPVTNLHRDEILSADDLPIKYAAYSACFRSEAGSAGRDTRGLIRQH 281

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     RI   LGL    M   +  +G   + ++ + 
Sbjct: 282 QFNKVELVKF-VKPEDSYEELEKLTNDAERILQLLGLPYRVMSMCTADLGFTAAKKYDIE 340


>gi|54308358|ref|YP_129378.1| seryl-tRNA synthetase [Photobacterium profundum SS9]
 gi|67461771|sp|Q6LT00|SYS_PHOPR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|46912786|emb|CAG19576.1| Putative seryl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 430

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 19/241 (7%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFEVKDHVDLGEMAGGLDFASAVKISGSRFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           M VP L +AD    +G+   +G+++            M   PT E  +T++ R  I    
Sbjct: 195 MYVPYLVNADSLFGTGQLPKFGEDLFHTKPATEEGVGMSLIPTAEVPVTNMVRDTITDEA 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     R   G++R  +F   +       PE S  +  ++     
Sbjct: 255 DLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEELTGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 KVLQLLELPYRKVILCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNMQDFQARRMQAR 373

Query: 239 F 239
           F
Sbjct: 374 F 374


>gi|226320444|ref|ZP_03796010.1| threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226234086|gb|EEH32801.1| threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 263

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  + +L + +E   RD      +L L +  IH+    G+  + P G K    +    RE
Sbjct: 169 KELRSYLNLREEIKKRDHRKLGKELDLFS--IHEEIGPGLVFFHPNGAKIRALIEDFWRE 226

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           E ++ G   +  P +  + LW  SG  D Y   M 
Sbjct: 227 EHSKNGYDILFTPHIGKSWLWQTSGHLDFYKDSMF 261


>gi|227488798|ref|ZP_03919114.1| histidyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091220|gb|EEI26532.1| histidyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 405

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/412 (14%), Positives = 119/412 (28%), Gaps = 42/412 (10%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHE 111
                E Q   G   + +P  +   L+        D   KEM    DR  +++   P   
Sbjct: 13  ETFTHEAQR-AGFEHIELPIFEDTHLFARGVGESTDVVTKEMYTFEDRGGRSVTLRPEGT 71

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
             +      H      LP         FR E RP+ G  R R+       +  +      
Sbjct: 72  AGVMRAVIEHNLDRGQLPVKLVYSGPFFRYE-RPQAG--RYRQLQQVGVEAIGVDDPALD 128

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQVFCSK 225
                +     R +  +GL    +   S       P   +    F+      E     ++
Sbjct: 129 AEIIALAD---RCYKSVGLTGYRLDLSSLGDAECRPAYREKLQAFLRKLPLDEETQRRAE 185

Query: 226 DFMDFPIPSENTDFDDIISLNSI---VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 +  +  +  +++    +       ++             F           RG+
Sbjct: 186 INPLRVLDDKRPEVQEMLVDAPLLLDHLSNSSREHFEVVKGLLGDFGVSYTINPKLVRGL 245

Query: 283 EVGHI-------FYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV-IESS 332
           +              G +  +     + G  A      +    +G+G  R + A+  E  
Sbjct: 246 DYYTKTCFEFVHEGLGAQSGIGGGGRYDGLMAQLGGQELSGIGFGLGVDRTLLALEAEGV 305

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGS 390
             G         +P ++ +  +    +  R     +   L   G      + D G + G+
Sbjct: 306 SAG---------SPRRVDVYGVPLGSEAKRVLA-GVVNNLRAAGVSTDMSYGDRGLK-GA 354

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               A   G    +++G + ++D  V ++      +E +SL  V  +   R 
Sbjct: 355 M-KGASRSGARYCLVLGEQELADGNVAVRDMNNHEQETVSLSAVQAFLEERL 405


>gi|225163703|ref|ZP_03726006.1| Histidine--tRNA ligase [Opitutaceae bacterium TAV2]
 gi|224801694|gb|EEG19987.1| Histidine--tRNA ligase [Opitutaceae bacterium TAV2]
          Length = 461

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 73/465 (15%), Positives = 143/465 (30%), Gaps = 64/465 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGK 91
            Q   G   + P      +++  + R+  +  G  E   P L+  +L+  +SG  D    
Sbjct: 4   FQSLPGFREFYPDAFARRNHIFRMWRQANHAFGFQEYDAPILEPLELYKAKSG--DEIEA 61

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           ++    D+  + +   P     +  +  +   + +  P  ++ I   +R E R + G  R
Sbjct: 62  QLFSFTDKGGRDVALRPEMTPTVCRLVGAKANALKR-PIKWFSIGEFYRYE-RAQKG--R 117

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMR------A 197
            R F   +   F      ++     + V  +R         + RL  +++          
Sbjct: 118 ERAFFQLNCDIFGEPGPEAEIELIALLVQAIRSFGLTAADFYVRLSDRNLWFYYLEALGF 177

Query: 198 ESGPIGGDLS--HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
               I G LS   +F  + D        +   +   + ++  +F  + SL ++ +     
Sbjct: 178 ADAQIRGILSAVDKFEKIGDDAFKPYAEAHGALTPELKAKVLEFLGVKSLPALEKILAPH 237

Query: 256 YAATSDVHNE---------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            A       +         KL   L          ++ G +   G  Y            
Sbjct: 238 IAQNPTAGEKLTARLADWRKLLGGLEAMGLGEFVEVDFGVVR--GLAYYTGFVFEAFDRK 295

Query: 307 GKDHYVQMGSY----------------GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G+   +  G                  G     V   ++      +G+  P  V    I 
Sbjct: 296 GELRAIAGGGRYNDLVAKLGYGDLPAVGFAIGDVTMGLLLEQ---RGLT-PAYVQAADIY 351

Query: 351 LI-----NIKAHDQVCRDACEKIYA-----RLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           ++     N  +         E+I A      L   G  V +       G QF  A   G 
Sbjct: 352 VVIGDSTNTNSEGGGGGVGKERIAAFGAINDLRAAGYRVEYPLKTTAFGKQFKAAVESGA 411

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            L +I GS  ++   V+ +        ++  ++V       FS N
Sbjct: 412 KLALIFGSDELAKGVVKFRDLTDRSEHEIPRDQVPAAVRDFFSGN 456


>gi|253699796|ref|YP_003020985.1| histidyl-tRNA synthetase [Geobacter sp. M21]
 gi|251774646|gb|ACT17227.1| histidyl-tRNA synthetase [Geobacter sp. M21]
          Length = 416

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 134/432 (31%), Gaps = 49/432 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP   +    + A  R      G  E+ +P L+  +L+  S     D   KEM 
Sbjct: 7   KGFNDILPGEVEKWQYIEATARRVFELYGLSEIRIPILEKTELFCRSIGDATDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ +  +   P     +   +  H     +     Y +   FR E RP+ G  R R+
Sbjct: 67  SFVDKGENKVTMRPEGTASVMRAYVEHKMHALDPVARLYYMGPMFRYE-RPQKG--RYRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F    A    +           M       F+ LGL    ++  S       P+  D   
Sbjct: 124 FHQIGAEITGVAAPSVDAQVLTML---THFFNELGLTEPTLQINSLGCPCCRPLYRDALK 180

Query: 209 EFIVLADTGE------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           +F  L D  E       + + S         S         + + +        A     
Sbjct: 181 KF--LLDRIESLCEDCKRRYESNPLRALDCKSAGCQEATKGAPSMLDYLCGECGAHFDQT 238

Query: 263 HNEKLFDSLPE-NKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG---ADGKDHY 311
                    P    +   RG++              G + ++     + G     G    
Sbjct: 239 RKYLELAGTPYAIDKRMVRGLDYYTRTTFEMVTTLLGAQSAVAAGGRYDGLIAEIGGPQI 298

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +G + +G  RV   + E     +    PD         + I A  +       ++ + 
Sbjct: 299 PGIG-FAMGVERVALLLAEKEFSRR----PD---------LFIAAMGEEAHAEAFRLMSA 344

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V  D  G+ + SQ   AD       +I+G   +S     +K    G + ++ L
Sbjct: 345 LQRGGAAVEIDYEGKSLKSQMRRADKFNSRFTLIIGGDELSRGTAPLKDMDGGTQSEVPL 404

Query: 432 --EEVINYASHR 441
             + +++    R
Sbjct: 405 SADAILSALKGR 416


>gi|163791200|ref|ZP_02185617.1| seryl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873531|gb|EDP67618.1| seryl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 427

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 13/201 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + +      G  EM  P L ++D    +G++  + +++ ++ 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDLHTEEHGYTEMMTPYLVNSDSMFGTGQFPKFKEDVFQI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 +   PT E  +T+ +R+ I     LP  F  +   FR E     R   G++R  
Sbjct: 222 --EGTDLTLIPTAEVPLTNYYRNEILKEEQLPVYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F   PE S     KM  +   +  +L L    +   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-KPETSYDELEKMTNNAEAVLQKLNLPYRVLALCTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDF 230
             + A     ++    +   F
Sbjct: 339 VWIPAQETYREISSCSNTEAF 359


>gi|91793103|ref|YP_562754.1| seryl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123356823|sp|Q12NE5|SYS_SHEDO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|91715105|gb|ABE55031.1| seryl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 428

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H  +     G+  + +    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 VKDHLDLGEALGGLDFKSAVKITGSRFIVMKGQLARLNRALGQFMLDLHTQEHGYTETYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L + D  + +G+   +G+++          + +   PT E  +T++ R  I    +LP
Sbjct: 196 PLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDTIVEVSDLP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             F      FR E     R   G++R  +F   +     + PE S  +  ++ +   ++ 
Sbjct: 256 LKFTAQTSCFRSEAGSYGRDTRGLIRQHQFEKVELVQI-VKPEDSMQALEELTLHAEKVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             LGL    M   +G +G   S     E  + A     ++    +  DF
Sbjct: 315 QLLGLPYRTMLLCTGDMGFGASKTYDLEVWLPAQNTYREISSCSNMKDF 363


>gi|110634154|ref|YP_674362.1| seryl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123353591|sp|Q11HC8|SYS_MESSB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|110285138|gb|ABG63197.1| seryl-tRNA synthetase [Chelativorans sp. BNC1]
          Length = 431

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P L   +    +G+   + +++ R  D         PT
Sbjct: 180 RALGQFMLDLHTTEHGYTEVQPPLLVRDEALFGTGQLPKFDEDLFRTTD----GRWMIPT 235

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  +  +   FR E     R   G++R  +F   +  S   
Sbjct: 236 AEVPLTNLVREEILDGEKLPLRYTALTPCFRSEAGSAGRDTRGMLRQHQFYKVELVSI-T 294

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             E +   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 295 DAESALAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQKTYDIEVWLPGQKTYREI 354

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 355 SSCSVCGDFQARRMNARY 372


>gi|254520543|ref|ZP_05132599.1| glycyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914292|gb|EEH99493.1| glycyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 463

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 114/360 (31%), Gaps = 61/360 (16%)

Query: 93  MLRL----ADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +      + +   +   P   + +   F+S    S + +PF   Q+   FR+E+ P  
Sbjct: 155 MFKTFQGITEDSASTIYLRPETAQGIFVNFKSVQRTSRKKVPFGIAQVGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +      Y + +    L ++ ++ ++  +     
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFK-----YWKDYCWNFLLNLGVQQDNLRMRDHGE 268

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        S     FP            +   + +         S +     
Sbjct: 269 EELSFYSN------ATSDIEYLFPFGWGELWGIADRTDYDLKKHQEHSGQDMSYLDPSTN 322

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMR 323
              +P     S            G  + +L         +   G D    M         
Sbjct: 323 EKYVPYVIEPS-----------LGADRVALAFLVDAYDEEELEGGDVRTVMH-------- 363

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                              ++AP+K +++ +        +    +Y+ LSK   ++ +D+
Sbjct: 364 ----------------LHPALAPYKAAILPLSKK---LSEKALDVYSDLSKK-FNIEYDE 403

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G  IG ++   D +G P  + +    + D  V I++R T  +E + + ++  Y      
Sbjct: 404 AG-SIGKRYRRQDEIGTPFCITIDFDTLEDEAVTIRNRDTMEQERIKISDLEAYIEKSLE 462


>gi|226310121|ref|YP_002770015.1| histidyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226093069|dbj|BAH41511.1| histidyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 433

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 140/450 (31%), Gaps = 70/450 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   ++P  Q   + +   +       G   +  P LQ  +L   + G  D   KE+ R
Sbjct: 10  KGTKDFMPQEQMQRNWIRRTLEAVFETYGCKPLETPMLQHYELLASKYGGGDEILKEVYR 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+ D+ +         +T +   + +    +PF  Y+I   FRD         R REF
Sbjct: 70  LNDQGDRELGLRYDLTVPLTKVVGMNPEMR--MPFKRYEIGKVFRD---GPVKTGRLREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  D      T   ++     M       F RLGL  + +   +  +   +  E  V  +
Sbjct: 125 IQCDVDIVGTTSVLAEAELLSM---AFEAFKRLGLD-VYIEVNNRKLLSGVLQELGVPVE 180

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI--------------------------- 248
                +          +     D  +     S+                           
Sbjct: 181 RAGDVMLSLDKLEKIGVDGVRDDLRERNVEESLVLAITSFLQEGVITLDLLKERFTSPLV 240

Query: 249 -----VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF----------GTK 293
                  +    Y   + V  E  F            GI V  IF            G +
Sbjct: 241 QEGIRELREMLAYVTGAGVAGELRFSPFLARGLGIYTGI-VYEIFLQDGSMTSSIGSGGR 299

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           Y   +        G+++     S+G+    ++AA+   + + +            + +I 
Sbjct: 300 YDQIIGRLLDD--GREYPAVGISFGLDV--ILAALANRNTEEQR--------AADVLVIP 347

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +             +  RL + G  V  +  G ++      A+  GF   +I G   V+ 
Sbjct: 348 LGTEASSLG-----LANRLRESGIRVELELTGRRLKKALDYANKEGFAFALIYGENEVNS 402

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +V ++    G  + + LE V  + S + S
Sbjct: 403 GQVVVRDMREGTEQPVPLELVEKWLSDKLS 432


>gi|91782396|ref|YP_557602.1| seryl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123168824|sp|Q143D9|SYS_BURXL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|91686350|gb|ABE29550.1| seryl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 431

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 73/228 (32%), Gaps = 15/228 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G  E+  P + + ++   +G+   +  +M
Sbjct: 157 SGARFTMLRGQIARLHRALAQFMIDTHTQHHGYTEIYTPYIVNPEILYGTGQLPKFADDM 216

Query: 94  LRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPR 146
            R+    D N        T E  +T+  R  I     LP         FR E     R  
Sbjct: 217 FRVEKGGDENTVTQYLISTSEISLTNTVRDSILEADALPIKLTAHSPCFRSEAGSYGRDT 276

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G++R  +F   +       PE S  +  +M      I  +L L    +   +G +G   
Sbjct: 277 RGLIRQHQFDKVEMVQIVA-PETSYDALEQMVGHAETILQKLELPYRVITLCTGDMGFSA 335

Query: 207 SH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +     E  V A     ++    +   F        + +      +V 
Sbjct: 336 AKTYDLEVWVPAQNTYREISSCSNTESFQARRMQARYRNAQGKPELVH 383


>gi|206978343|ref|ZP_03239217.1| seryl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217957593|ref|YP_002336135.1| seryl-tRNA synthetase [Bacillus cereus AH187]
 gi|222093786|ref|YP_002527834.1| seryl-tRNA synthetase [Bacillus cereus Q1]
 gi|228983272|ref|ZP_04143487.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229136860|ref|ZP_04265489.1| Seryl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|229153796|ref|ZP_04281928.1| Seryl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|226701626|sp|B7HPS8|SYS_BACC7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783006|sp|B9IYI0|SYS_BACCQ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|206743435|gb|EDZ54868.1| seryl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217068054|gb|ACJ82304.1| seryl-tRNA synthetase [Bacillus cereus AH187]
 gi|221237832|gb|ACM10542.1| serine--tRNA ligase (seryl-tRNA synthetase) [Bacillus cereus Q1]
 gi|228629665|gb|EEK86360.1| Seryl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228646595|gb|EEL02800.1| Seryl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|228776452|gb|EEM24803.1| Seryl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 424

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +   +  G  E+  P + +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILNKDQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|163841662|ref|YP_001626066.1| glycyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162955138|gb|ABY24653.1| glycyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 479

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 119/361 (32%), Gaps = 70/361 (19%)

Query: 98  DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           D  +      P T + + T+       S +  PF   QI   FR+E+ P   + R+REF 
Sbjct: 170 DNQEGLHYLRPETAQGIFTNFNNVLTTSRKKPPFGIGQIGKVFRNEITPGNFIFRTREFE 229

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F   P  +   +                                 H      + 
Sbjct: 230 QMEIEFFTA-PADADEWFK--------------------------------HWVDACWEW 256

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVHNEKLFDSLPEN 274
                    +   F +P ++       +++   +     + +     + N   FD    +
Sbjct: 257 FVDLGINPDNMRKFDVPEDDRAHYSAGTIDVEYKFGFQGSEWGELMGIANRTDFDLNNHS 316

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K               GT+ S      F  A G+ +   +     G  R + A +  ++ 
Sbjct: 317 KAS-------------GTELS-----YFNQASGERYTPYVIEPSFGLTRSMMAFLIDAYT 358

Query: 335 GKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                           +     +AP K +++ + + ++      + + A L K   ++ +
Sbjct: 359 EDQAPNTKGGVDTRTVLKLDPRLAPIKAAVLPL-SRNEDLSPKAKDLAAELRKSW-NIEF 416

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++   D +G P  + V    + D  V I+ R +  +E ++L++V  Y + R
Sbjct: 417 DDAGA-IGRRYRRQDEVGTPFCITVDFDTLEDQAVTIRERDSMSQERVALDKVRGYLAER 475

Query: 442 F 442
            
Sbjct: 476 L 476


>gi|160903235|ref|YP_001568816.1| histidyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|160360879|gb|ABX32493.1| histidyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 421

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 128/415 (30%), Gaps = 33/415 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + +    ++     G  E+  P ++  +L+        D   KEM    D+  +++   
Sbjct: 21  WEYIENTAKKLFKIYGYKEIRTPLIEKTELFSRGIGQETDIVQKEMYTFDDKKGRSLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +       P   + +   FR E +P+ G  R REF    A  F    
Sbjct: 81  PEGTASVARAYIENSLITFGSPQKLFYMGPMFRYE-KPQAG--RYREFYQIGAEIFGTDH 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE-FIVLADTGETQVFCSKD 226
             +      +       F++L L +  ++     IG   S E +  +  T    +  +  
Sbjct: 138 PLADAE---LITFVYDFFNKLKLSNFKVKI--NNIGTFESREKYKEVLKTYYQPLLPNLC 192

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                  + N        ++    +         D  + + F++L +  +      +V  
Sbjct: 193 EDCQRRFNTNIMRLLDCKIDVEAAKNAPSILDYLDEESREHFENLQKYLKAYNVPFQVDP 252

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               G  Y    +   + +D  +  V  G            ++E     K      ++  
Sbjct: 253 KIVRGLDYYTKTAFEVEHSDLGEQAVVAGGGRYDD------LVEQLGGPKTPGVGFAIGI 306

Query: 347 FKISL----------------INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            ++                  + I    +    A   +   L K G + F +     +  
Sbjct: 307 ERVIEALKKENVEVESESEIDVYIAFQGEKGEMAAVTLSKELRKKGINTFLNISKRNLSG 366

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           QF  A+ L     V++G + +S   V IK+  +G +  +    V      +    
Sbjct: 367 QFKHANRLNAKYVVVIGEEEISRDIVTIKNMKSGEQTQIERNWVSEIIVEKLREE 421


>gi|289425072|ref|ZP_06426849.1| glycine--tRNA ligase [Propionibacterium acnes SK187]
 gi|295130509|ref|YP_003581172.1| glycine--tRNA ligase [Propionibacterium acnes SK137]
 gi|289154050|gb|EFD02738.1| glycine--tRNA ligase [Propionibacterium acnes SK187]
 gi|291377378|gb|ADE01233.1| glycine--tRNA ligase [Propionibacterium acnes SK137]
          Length = 481

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 119/398 (29%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 141 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 194

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 195 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------- 241

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                  G D              Q +       +     N D 
Sbjct: 242 -----------------------GTDEEW----------HQYWIDVRTAWYTDLGINPDN 268

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 269 LRHYEHPKEKLSHYSKRTVDVEYKFGFSGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 326

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 327 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 383

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 384 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 440

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V I+ R T  ++ +S+++V  Y   + 
Sbjct: 441 TVDFDSLEDDAVTIRERDTMAQQRVSIDKVEEYLGGKL 478


>gi|229007232|ref|ZP_04164833.1| Glycyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228753986|gb|EEM03423.1| Glycyl-tRNA synthetase [Bacillus mycoides Rock1-4]
          Length = 455

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 117/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +     +       LG+                 
Sbjct: 208 FTFRTREFEQMELEFF-CKPGEDLEWFTFWRNTCKNWLLSLGMH---------------- 250

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 251 EESMRLRDHGEDELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 295

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 296 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 335

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 336 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGAGEVFAELAK-DFVV 391

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 392 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 450

Query: 440 HRFS 443
            +  
Sbjct: 451 KKIQ 454


>gi|29349720|ref|NP_813223.1| seryl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569915|ref|ZP_04847324.1| seryl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|298383977|ref|ZP_06993538.1| serine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|29341630|gb|AAO79417.1| seryl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840296|gb|EES68378.1| seryl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|298263581|gb|EFI06444.1| serine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 424

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 119/349 (34%), Gaps = 75/349 (21%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 EEKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKESHQQMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S              F +    DF + SE    
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMS--------------FTAALCFDFEVYSEAQKR 349

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                                     +EV  +  F T  +  + 
Sbjct: 350 W-----------------------------------------LEVSSVSNFDTYQANRLK 368

Query: 300 ATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
             ++ A+ K      +    +   R+VAA++E++   +GI  P ++ P+
Sbjct: 369 CRYRSAEKKTELCHTLNGSALALPRIVAALLENNQTPEGIRIPKALVPY 417


>gi|331703077|ref|YP_004399764.1| serine tRNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801632|emb|CBW53785.1| Serine tRNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 422

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K +  +  I+ +   +    E+  P + +    + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRVIADILLKRHEKHNYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVG--- 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 225 --EQYLIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +     + P+ S +    +      + +   L    +   SG IG   +     E   
Sbjct: 283 KVELVKI-VHPDQSMNELELLVKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYDLEVWF 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                  ++    +  DF   +  T F D  S   +V 
Sbjct: 342 PEQNKYREISSCSNCTDFQARNIQTRFKDKDSKIKLVH 379


>gi|296840775|ref|ZP_06863421.2| serine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296839997|gb|EFH23935.1| serine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 441

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 80/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 145 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLKHGYTEH 204

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D +       PT E  +T+     I    
Sbjct: 205 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKTTQYLIPTAEVTLTNTVADSILDEG 264

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 265 GLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 323

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 324 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 383

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 384 FKDENGKNRLVH 395



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 380 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 431


>gi|326790254|ref|YP_004308075.1| histidyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326541018|gb|ADZ82877.1| histidyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 421

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 124/422 (29%), Gaps = 47/422 (11%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             +V  IIR   +  G  ++  P  +  DL+        D   KEM    D+ +  +   
Sbjct: 20  WLDVEQIIRNLCDDFGFNQIRTPMFEFTDLFARGVGETTDIVNKEMYSFVDKGENRITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H       P   Y I   FR E RP+ G  R R+F       F    
Sbjct: 80  PESTAAVVRAFLEHSMFADTQPTKLYYISPTFRYE-RPQAG--RQRQFHQFGVEMFGTDS 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK 225
             +      +  + L+   RLG+  + +   S  GP      +E +      + +  C  
Sbjct: 137 PTADAEVIAIGHTLLK---RLGINKVELHINSLGGPECRKKYNESLKAFLNTKKEHLCEL 193

Query: 226 DFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                                     +            +     +   +  E   V   
Sbjct: 194 CQERMDKNPLRVLDCKNPQCQEHLKGAPTVLENLGEECRAHFETLQKLLTAMEIPFVVDP 253

Query: 281 GIEVGHIFYFGTKY---SLPMSAT-----------FKGADGKDHYVQMGSYGIGAMRVVA 326
           GI  G  +Y  T +   S  + A                 G  H   +G +G G  R++ 
Sbjct: 254 GIVRGLDYYTKTVFEFISNDIGAQGTVCGGGRYDRLVDEIGGKHVPAVG-FGAGMERLII 312

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD--M 384
                ++          +AP    L      D+   +   K+   L + G     D    
Sbjct: 313 VRDAENNA--------PLAPAMRDLFIGYRGDEAMME-AFKLVNALRQEGISAESDHLQR 363

Query: 385 GEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +   +FA             I+G   + + ++++K   +G    + + + +   S+  
Sbjct: 364 SIKAQMKFAN----KINARYSAIIGESELENGEIQLKEMESGDSVTVPMSQFVQMFSNII 419

Query: 443 SN 444
             
Sbjct: 420 KK 421


>gi|167587051|ref|ZP_02379439.1| histidyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 446

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 135/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGEHLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +              +    + L D    
Sbjct: 182 AHRVELIKYLEQHVDALDADAQRRLYTNPLRVLDTKNPALQEIVQNAPKLIDFLGDHSRA 241

Query: 274 NKRVSARGIEVGHIFYF-------GTK-YSLPMSATFKGADGKD---------------- 309
           +     R ++  +I +        G   Y+L +        G                  
Sbjct: 242 HFDGLQRLLKANNIPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E             + P +  + +  +    +  R+  
Sbjct: 302 GGKPTAACGWAMGVERILELLKEE-----------QLMPEQDGVDVYVVHQG-EAAREQA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
                RL   G DV +    D       SQ   AD  G    VI G + +++  V +K  
Sbjct: 350 FIAAERLRDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEIANGTVGVKAL 409

Query: 421 RLTGI------REDMSLEEVINYASH 440
           R TG       ++ + +E +  +  +
Sbjct: 410 RGTGEEGEKNAQQTVPVESLTEFLIN 435


>gi|114800440|ref|YP_760631.1| seryl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123027986|sp|Q0C0W2|SYS_HYPNA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|114740614|gb|ABI78739.1| seryl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 432

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 78/260 (30%), Gaps = 21/260 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTG--MIHQHSKG------IYSWLPLGQKALDNVNAIIREE 60
           P L  +P+D       L  + G  M+   +          +      +    +   + + 
Sbjct: 133 PKLINDPKDHADLGEALKGQGGFPMMDFEAAARMSGARFVALRGKLTRLERALANFMLDL 192

Query: 61  QN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           Q    G  EMSVP L        +G+   + +++ R    +       PT E  +T++ R
Sbjct: 193 QTTEHGYEEMSVPVLVRDQALYGTGQLPKFAEDLFRTTVDH----WLTPTAEVSLTNLVR 248

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I     LP  F      FR E     R   G++R  +F   +  S             
Sbjct: 249 EQILDAAQLPLRFTAHTPCFRSEAGSAGRDTKGMIRQHQFNKVELVSIVANEAEGLAELE 308

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +M      +  RL L    M   +G +G         E  + +     ++       DF 
Sbjct: 309 RMTGCAEEVLKRLELPFRRMLLCTGDMGAGARKTYDLEVWLPSQNTYREISSCSYCGDFQ 368

Query: 232 IPSENTDFDDIISLNSIVEQ 251
               +  +            
Sbjct: 369 ARRMDARYRPEPKAKPEYVH 388


>gi|319901328|ref|YP_004161056.1| seryl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319416359|gb|ADV43470.1| seryl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 424

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 118/349 (33%), Gaps = 75/349 (21%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E   
Sbjct: 133 MENELPKDA-LPHWELTKKYDIIDFDLGVKITGAGFPVYKGKGARLQRALINFFLDEART 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTECFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S              F S    DF + SE    
Sbjct: 308 HVEGLLKKLELPYRILRLC----GGDMS--------------FTSSICYDFEVYSEAQKR 349

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                                     +EV  +  F T  +  + 
Sbjct: 350 W-----------------------------------------LEVSSVSNFDTYQANRLK 368

Query: 300 ATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
             ++ A+ K      +    +   R+VAA++E++   +GI  P ++ P+
Sbjct: 369 CRYRTAEKKTELCHTLNGSALALPRIVAALLENNQTPEGIRIPKALVPY 417


>gi|304407553|ref|ZP_07389205.1| histidyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304343504|gb|EFM09346.1| histidyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 416

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 131/437 (29%), Gaps = 47/437 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q   G    LP   +    V +  R+   R    E+  P  ++ +L+        D 
Sbjct: 1   MAFQKPPGTQDLLPGAVERWQFVESKARDICRRFNFREIRTPIFEATELFQRGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR ++++   P         F  +           Y I   FR E R + G
Sbjct: 61  VEKEMYTFTDRGNRSLTLRPEGTAGAVRAFVENKLYGEPDLTKLYYIGPMFRYE-RAQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE---SGPIGGD 205
             R R+F      +              +  ++   +  +GLK + +      +  +   
Sbjct: 120 --RYRQFHQFGVEALGAVDPALDAEVIALGYTF---YTEVGLKGVRVEINSVGTPAVRAA 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              + +   +   + +           P    D      ++    +       + D   +
Sbjct: 175 FREKLLSFLEPKRSLLCKDCQSRIDRNPLRVLD----CKVDQAHFEGAPSILESLDEECQ 230

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-------------------- 305
             FD +           E+      G  Y    +  +K                      
Sbjct: 231 THFDKVKTYLSDMNIPFEINPRLVRGLDYYTHTAFEYKAEGIGAIDTVGGGGRYNGLVAE 290

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G D        G+G  R V  ++E          P++ A     ++ +    +     
Sbjct: 291 VGGPDQPGV--GLGLGLERTVM-LLEHQQTE----LPNATA-IDAYVVALG---EAAERE 339

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+  +L   G  V  D  G ++ +Q   AD L      I+G   ++  ++ +K   TG
Sbjct: 340 TSKLIYQLRSSGLSVERDYQGRKMKAQMKSADRLQARYTAILGDDELARGEIALKEMATG 399

Query: 425 IREDMSLEEVINYASHR 441
            +  +SL+ +      +
Sbjct: 400 EQRFVSLDSLAEAIKKQ 416


>gi|320323766|gb|EFW79850.1| seryl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327907|gb|EFW83912.1| seryl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 426

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ ++    +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKITREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PEDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|319740173|gb|ADV60380.1| glu- + pro-tRNA synthetase [Oberthueria formosibia]
          Length = 135

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           RGI+       G  +S     T +  +  G+  +V   S+G+ + RV+  ++    D KG
Sbjct: 17  RGIQGATSHCLGQNFSKMFDITVENPEKKGEKIHVWQNSWGL-STRVIGVMVMIHGDDKG 75

Query: 338 IIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++ P  +A  ++ LI +           +      + +   L K G     D  
Sbjct: 76  LVLPPRIAKTQVILIAVGITAKTTPEDREKLEGKTDDLRNELRKAGLRAESDLR 129


>gi|139474588|ref|YP_001129304.1| histidyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|166228619|sp|A2RGY1|SYH_STRPG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134272835|emb|CAM31113.1| histidyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 426

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 AAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEA-------VKDMLEALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       + L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDVYLAVLGDG- 339

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 340 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQELEVSFED 412


>gi|15639659|ref|NP_219109.1| glycyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025897|ref|YP_001933669.1| glycyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094401|sp|O83678|SYG_TREPA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|238689338|sp|B2S3R1|SYG_TREPS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|3322974|gb|AAC26570.1| glycyl-tRNA synthetase (glyS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018472|gb|ACD71090.1| glycyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 462

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 149/478 (31%), Gaps = 80/478 (16%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G +   S+      G++ + P+G    +N+     ++  R     + +    L  
Sbjct: 7   LCKRRGFVFPSSEIYGGQGGVWDYGPMGIALKNNIAHAWWQDMTRLHDHIVGLDAAILMH 66

Query: 77  ADLWVESGRYDSYGK----------------------------------------EMLRL 96
            ++W  SG  D +                                           M   
Sbjct: 67  PNVWRTSGHVDHFSDPLVDCTVCKSRFRADQVAVPSAGGPCPQCGGALTGVRNFNLMFST 126

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMR 151
                D     +   P   + +   +++ +++ R  +PF   QI   FR+E+  +  + R
Sbjct: 127 HMGPTDERASLLYLRPETAQGIYVNYKNVLQTTRLKVPFGIAQIGKAFRNEIVTKNFIFR 186

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EF   +   F    E + H +          + + G++   MR  +       +HE  
Sbjct: 187 TCEFEQMEMQFFVRPAEDT-HWFEYWCAQRWAFYQKYGVRMNHMRWRT-----HAAHELA 240

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A      +  +       +   +   D  ++ ++        Y       +      +
Sbjct: 241 HYARAACD-IEYAFPMGFRELEGVHNRGDFDLTRHAQHSGKDLCYVDPDPNLDAAARRYV 299

Query: 272 PENKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           P     SA       +F       +Y    +  F  ++      Q G+   G MR+V   
Sbjct: 300 PCVVETSAGLTRCVLMFLCDAYTEEYVQAPNVAF--SETTQTADQEGAARTGEMRIV--- 354

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                    +    +++P  ++ + +   D +  D    +   L +      +D  G  I
Sbjct: 355 ---------LRLHPALSPTTVAFLPLVKKDGLV-DLARAVRDELRE-DFACDFDAAGA-I 402

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G ++   D +G P  V V  +   D  V ++ R +  +  +S   +  +      + R
Sbjct: 403 GKRYRRQDEVGTPFCVTVDYQSKEDDTVTVRLRDSMAQRRVSRAFLAEFLRTEIKHYR 460


>gi|166712549|ref|ZP_02243756.1| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 426

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD  + +G+   +  ++ +  +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMLGTGQLPKFEDDLFQ-TEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           +    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACA-PEDSDAEHQRMTRCAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|305663775|ref|YP_003860063.1| glycyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378344|gb|ADM28183.1| glycyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 585

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 82/536 (15%), Positives = 158/536 (29%), Gaps = 141/536 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE---EQNRTGAIEMSVPTLQSADLWVESGRYDSYG--- 90
            G Y   PLG    +N+  + RE   +Q++   +E+  P +  A ++  SG  +++    
Sbjct: 30  SGFYDLGPLGVLLKNNIVDLWREYFVKQHQDFVVEIETPIITPAIVFRASGHEENFTDYA 89

Query: 91  ----------------KEMLRLADRN------DKAMIYGPTHEEV----------MTDIF 118
                           +E+L+++         D+ +        V             +F
Sbjct: 90  VECLSCHRVYRADHLVEEILKISAEGLTGEQLDEIIEKNNIRCPVCKGSLSKTRKFLLLF 149

Query: 119 RSHIKSY----------------------------RNLPFTFYQIQLKFRDELRPRFGVM 150
           +++I  Y                            R LP    QI    R+E+ PR G +
Sbjct: 150 QTYIGPYTPENLAYLRPEAAQGMFINFKRVYELMRRRLPLGIAQIGRVARNEISPRQGPI 209

Query: 151 RSREFLMKD-AYSFDLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAES------- 199
           R REF + +  + +D         Y +     +RI     R      P+           
Sbjct: 210 RLREFTIMEIEFFYDDKDPRCDILYERCSDRKIRILTAQQRERGDDKPIEISVVEAYKEG 269

Query: 200 ------------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               IG      +       E   +  + F    I  +    + 
Sbjct: 270 FIKSPWLAYWMCIAHNFISAIGVPEDKTYFEEKLPTERAHYSQQTFDQMVIVDKWGKLEV 329

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSA 300
                            ++           P  +R     I+   I   FG++      A
Sbjct: 330 SGHAYRHTYDIDRHIRFSNADLYAIRQLPSPRIERKRRVKIDKTLIIKIFGSRAGEVFKA 389

Query: 301 TF-KGADG-------------------------------------KDHYVQMGSYGIGAM 322
            +  G D                                      +     +     GA 
Sbjct: 390 LYSLGEDRLAEIVEKTPGDRIMLNDGIEIPKNILKIEEVEEQIWTERFIPHVAEPSFGAE 449

Query: 323 RVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R++   +E ++        + +P  +AP KI++  +    +   +    IY  L +    
Sbjct: 450 RLLYIALEYAYTEDEGRIILKFPKRIAPIKIAITPLVDR-EPLTNVAVNIYKTLKQYYYS 508

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           ++ +  G  IG ++A AD LG P  V V  + +  +   I+ R T  +  + + E+
Sbjct: 509 IYIE--GGSIGKKYAYADELGIPYVVTVDYESIERADATIRDRDTRKQIRVPINEL 562


>gi|15675899|ref|NP_270073.1| histidyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71911627|ref|YP_283177.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|32130143|sp|Q99XK9|SYH_STRP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|13623136|gb|AAK34794.1| putative histidine-tRNA ligase [Streptococcus pyogenes M1 GAS]
 gi|71854409|gb|AAZ52432.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 426

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 AAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEA-------VKDMLEALDIPYVIDTNMVRGLDYYSHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       I L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDIYLAVLGDG- 339

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 340 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQEVEVSFED 412


>gi|296327394|ref|ZP_06869943.1| histidine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155509|gb|EFG96277.1| histidine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 413

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 131/414 (31%), Gaps = 51/414 (12%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+    G   D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYE-RPQAG--RQREFNQIGLEVFGEKSPKV 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----------HEFIVLADTGETQ 220
                 +     +   +LG+  + ++  S  +G   S          H    L D  E  
Sbjct: 141 DAEVIAIG---YKFLEKLGITDLEVKINS--VGSKASRTVYREKLIEHFKSHLDDMCEDC 195

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
                      +  +     D       +  +            +K  D           
Sbjct: 196 RDRINRNPLRLLDCKVDGEKDFYKSAPSIIDYLFEDERKHYDDVKKYLDVFGIKYTEDPT 255

Query: 280 --RGIEVG--HIF-----YFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAA 327
             RG++     +F       G++ ++     +       G      +G +  G  R++  
Sbjct: 256 LVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVG-FATGVERIMM- 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E ++            P     + I    +   +   KI   L      V+ D   + 
Sbjct: 314 LLEENY------------PKNTPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEK- 360

Query: 388 IGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            G +     AD L     VI+G   ++   V +K   T  ++++ +EE+INY  
Sbjct: 361 -GMKSHMKKADKLETRYCVILGEDELNKGIVLLKDFSTREQKEIKIEEIINYIK 413


>gi|253996801|ref|YP_003048865.1| seryl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983480|gb|ACT48338.1| seryl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 424

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 13/196 (6%)

Query: 37  KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  GQ  K    +   + + Q  + G  E   P L +A+    +G+   + +++
Sbjct: 157 SGARFTLMRGQIAKMHRALAQFMLDTQTEQHGYEECYTPYLVNAETLTGTGQLPKFEEDL 216

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
             LA  ND  +   PT E  +T+  R  I    +LP         FR E     R   G+
Sbjct: 217 FSLAH-NDSKLYLIPTSEVTLTNTVRDEIVPLESLPIKLTAHTPCFRSEAGSYGRDTKGM 275

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +     + PE S  +  +M      +   LGL    +   +G +G   +  
Sbjct: 276 IRQHQFDKVEMVQI-VHPETSYQALEEMVGHAENVLKALGLPYRVVSLCTGDMGFGAAKT 334

Query: 209 ---EFIVLADTGETQV 221
              E  + A     ++
Sbjct: 335 YDLEVWLPAQNTYREI 350


>gi|228999674|ref|ZP_04159250.1| Glycyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228760036|gb|EEM09006.1| Glycyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 458

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 117/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +     +       LG+                 
Sbjct: 211 FTFRTREFEQMELEFF-CKPGEDLEWFTFWRNTCKNWLLSLGMH---------------- 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEDELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGAGEVFAELAK-DFVV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|260598900|ref|YP_003211471.1| histidyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260218077|emb|CBA32825.1| Histidyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 424

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 133/430 (30%), Gaps = 33/430 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGDTAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGVEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE---KLF 268
             A     +    K   D      +     + S N  V+          D  +E   + F
Sbjct: 178 RDALVAFLEQHVDKLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPMLGDYLDEESREHF 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM-- 322
             L      +     V      G  Y          T  G+ G       G Y       
Sbjct: 238 AGLCAFLDDAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGT--VCAGGRYDGLVEQL 295

Query: 323 --RVVAAVIESSHDGKGIIWPDSVAP-------FKISLINI-KAHDQVCRDACEKIYARL 372
             R   AV  +    + ++   +V P         I LI              E++   L
Sbjct: 296 GGRAAPAVGFAMGLERLVLLVQAVNPEFTADPVVDIYLIASGNGTQSAAMQLAERVRDAL 355

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                   +     +   QFA AD  G  + +++G   V++ +V +K   +G ++ ++  
Sbjct: 356 PGCKLMTNYGGGNFK--KQFARADKWGARIALVLGEDEVANRQVVVKDLRSGEQQALAQS 413

Query: 433 EVINYASHRF 442
           E+  +     
Sbjct: 414 ELAAHLQTLL 423


>gi|172035843|ref|YP_001802344.1| seryl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171697297|gb|ACB50278.1| seryl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 429

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 12/205 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L ++     +G+   + +E   +    +  + 
Sbjct: 178 GAALERALINFMLDQQIAAGYLEVMPPVLINSAALQGTGQLPKFAEESFNVP---EDDLW 234

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++   I     LP         FR E     +   G++R  +F   +  
Sbjct: 235 LAPTAEVPVTNLYSGEILEAEILPIKHCAFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 294

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+ ++ ++      I   L L    +   +G +G   +     E  + +   
Sbjct: 295 KL-VHPETSEAAHQQLVEDAEAILQALKLPYRVLELCTGDLGFGATKCYDLEVWMPSSNS 353

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDI 242
             ++    +  DF     N  F + 
Sbjct: 354 YREISSCSNCWDFQARRANIRFKEK 378


>gi|153009670|ref|YP_001370885.1| seryl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|151561558|gb|ABS15056.1| seryl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 442

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E   P +   +    +G+   + +++ R  D         PT
Sbjct: 191 RALGQFMLDLHTMEHGYTETMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 246

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   ++LP  +  +   FR E     R   G++R  +FL  +  S   
Sbjct: 247 AEVPLTNLVADEIVDTKSLPQRYTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 305

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             + S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 306 DADSSIAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQKTYDIEVWLPGQNTYREI 365

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 366 SSCSVCGDFQGRRMNARY 383


>gi|251791827|ref|YP_003006547.1| histidyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247533214|gb|ACS96460.1| histidyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 425

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 145/438 (33%), Gaps = 46/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V + +R   +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTDTPLWQWVESKVRSVLSAYGYAEIRMPIVESTPLFARAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR+++++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMFTFDDRDEESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F +           +     R++  LG+    +  +   IG   + +  
Sbjct: 122 YRQFHQVGVEIFGIPNPEIDAE---LIALTARLWKDLGIFD-HVTLQLNSIGSLDARKNY 177

Query: 212 VLADT----------GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S++    ++++    +  +    +    
Sbjct: 178 RQALVDFLQNHIDILDEDSKRRLTTNPLRILDSKDQRVQEVLNDAPKLHDYLDDESREHF 237

Query: 262 VHNEKLFDSLPEN---KRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKD 309
                L DSL       +   RG++     +F       G + ++     + G       
Sbjct: 238 AQLCTLLDSLGIQYEINQKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACE 366
           H      + +G  R+V  V E +        P    P  + L  +   +       +  E
Sbjct: 298 HATSGVGFAMGLERLVLLVQEVN--------PHIELPRAVDLYVVYQGEDTTIAAFNLAE 349

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGI 425
           K+ + L            G     QF  AD  G  L +++G + V + +V +K  L  G 
Sbjct: 350 KLRSELP--HLRTMLHCSGGNFKKQFKRADKTGAKLALVIGEEEVKNQQVVVKDLLQQGE 407

Query: 426 REDMSLEEVINYASHRFS 443
           +  ++  ++ ++  +   
Sbjct: 408 QTAVAFADITSHIKNTLK 425


>gi|121635325|ref|YP_975570.1| seryl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|166222753|sp|A1KV93|SYS_NEIMF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|120867031|emb|CAM10794.1| seryl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325132820|gb|EGC55500.1| seryl-tRNA synthetase [Neisseria meningitidis M6190]
 gi|325138723|gb|EGC61275.1| seryl-tRNA synthetase [Neisseria meningitidis ES14902]
 gi|325198782|gb|ADY94238.1| seryl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 431

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|94501124|ref|ZP_01307647.1| histidyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94426700|gb|EAT11685.1| histidyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 426

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 74/454 (16%), Positives = 145/454 (31%), Gaps = 79/454 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +      + ++   +  G  E+  P ++   L+  S G   D   K
Sbjct: 7   QAIRGMNDILPGESQVWRYFESTVKSVLDGFGYQEIRTPVVEQTHLFKRSIGEVTDIVEK 66

Query: 92  EMLRLADRNDKAMIYGPT-------HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           EM    DRN +++   P          E    I  +  +         + +   FR E R
Sbjct: 67  EMYTFDDRNGESLTLRPEGTASCVRACEQHQLIANNQRQ-------RLWYMGPMFRYE-R 118

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P+ G  R R+F      +F +           M     +++ +LG++   +  E   IG 
Sbjct: 119 PQKG--RYRQFHQIGVETFGMADPAIDAELIVM---THQLWKKLGIRD-KVELELNTIGS 172

Query: 205 DLS--------------------HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +                     +     DT   ++  SKD     + ++  +F D + 
Sbjct: 173 NEARANYKAALVDYLSGVKDQLDEDSQRRLDTNPLRILDSKDQNTQSLLNDAPNFHDYLD 232

Query: 245 LNSIVEQ-------WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH--IFYFGTKYS 295
             S                    +    +  D             E+G       G +Y 
Sbjct: 233 EESEAHFAELKALLDEVGIEYKVNPRLVRGLDYY-SKTVFEWITSELGAQGTVCAGGRY- 290

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV-APFKISLINI 354
                  +   GK       + G   M  +  ++ES +     + PD V +   + L+++
Sbjct: 291 ---DGLVEQLGGKATPAVGFAMG---MERLILLLESLN-----VIPDQVKSNIDVYLVSM 339

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG-----SQFAVADLLGFPLQVIVGSK 409
                       ++   + K+   +        IG      Q   AD  G    +I+G  
Sbjct: 340 GNVTTAAMALAAQLREAVPKLRLQMH-------IGGGNFKKQMKKADESGARFALILGED 392

Query: 410 FVSDSKVEIKH-RLTGIREDMSLEEVINYASHRF 442
            V   +  IK  R +  +  ++ +E+ N+   + 
Sbjct: 393 EVKAGQASIKSLRDSAEQMTLNNDELANWLQQQL 426


>gi|78224711|ref|YP_386458.1| seryl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|123570656|sp|Q39PU1|SYS_GEOMG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78195966|gb|ABB33733.1| seryl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 423

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 13/194 (6%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +    + G  E   P + + +    +G+   + +++  L   +    
Sbjct: 168 GARLERALINFMLDLHTEKHGYEETLPPFMVNRESMTGTGQLPKFEEDLFHL---DGTDY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP ++      FR E     +   G++R  +F   + 
Sbjct: 225 YLIPTAEVPVTNIHRGEILKGSDLPLSYTAYTPCFRKEAGSYGKDVRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   P  S     ++  +   +  +LGL    +   +G +G   +     E  + A  
Sbjct: 285 VKF-THPSTSYAELERLLANAEEVLRQLGLHYRVVELCTGDMGFSAAKTYDIEVWLPAQD 343

Query: 217 GETQVFCSKDFMDF 230
              ++    +F DF
Sbjct: 344 TYREISSCSNFEDF 357


>gi|296158991|ref|ZP_06841819.1| histidyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295890866|gb|EFG70656.1| histidyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 446

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 135/448 (30%), Gaps = 71/448 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIIEHTQLFKRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +   S      L+HE    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLMGIKLEINSL----GLAHERA-- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E      K        ++   + + + +           A  +    + L +    
Sbjct: 182 AHRVELIAHLEKHMDVLDEEAKRRLYTNPLRVLDTKNPAMQEVAQNAPKLIDFLGEESRA 241

Query: 274 NKRVSARGIEVGHIFYF-------GTK-YSLPMSATFKGADGKD---------------- 309
           +     R ++  +I +        G   Y+L +        G                  
Sbjct: 242 HFDGLQRILKANNIPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E             + P      +  +   D   R+  
Sbjct: 302 GGKPTAACGWAMGIERILELLKEE-----------QLVPEDEGCDVYVVHQGD-AAREEA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             I  RL   G DV      D  G+    +     AD  G    V++G   +++  V +K
Sbjct: 350 FIIAERLRDTGLDVILHCSAD--GQTASFKSQMKRADASGAAFAVVLGEDEIANGTVGVK 407

Query: 420 -HRLT------GIREDMSLEEVINYASH 440
             R T        + ++  E++  +  +
Sbjct: 408 PLRDTNANGGKNEQHNVPAEDLTEFLIN 435


>gi|223994633|ref|XP_002287000.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220978315|gb|EED96641.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 683

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 146/424 (34%), Gaps = 80/424 (18%)

Query: 93  MLRLA--DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           M + +            P T + +  +  R    + + +PF   QI L FR+E+ PR G+
Sbjct: 237 MFKTSIGPEGTAVGYLRPETAQGLFVNFRRLLDANSQKMPFAAAQIGLGFRNEIAPRSGL 296

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LG-LKSIPMRAESGPIGGD 205
           +R REF M +   F    + S  +++ +    L +F R   LG  K+  +R       G 
Sbjct: 297 LRVREFCMGEIEHFVNPDDKSHPNFSSVANKELVLFGRDDQLGSGKTKTIRVGDAVATGL 356

Query: 206 LSHEFIVLADTGETQVFCSKDFMDF-----------PIPSENTDFDDIISLNSIVEQWTA 254
           +++E +       TQ+F  +  MD             +     D  D+   +S       
Sbjct: 357 VNNETLAYF-MARTQLFMERIGMDPSRLRFRQHLTTEMAHYACDCWDLEIQSSYGWVECV 415

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGA-------- 305
            +A  +    +    +       + +  E   +     K+    +  TFKG         
Sbjct: 416 GHADRACYDLDVHGKATKTPMIATMKLDEAREVEVAKLKFDRKALGKTFKGDQRVVAAAL 475

Query: 306 -------------------------DGKDHYVQMGSY-------------------GIGA 321
                                    DG +   +M ++                     G 
Sbjct: 476 EALAENWADFEPVATTLESDGKATVDGFEITKEMVTWKKETKKVHEIKYTPSVIEPSFGM 535

Query: 322 MRVVAAVIESSHDGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            R++ +++E     +        + +  +VAP K +++ I + D+      ++I A L  
Sbjct: 536 GRILYSLLEHCFYQRDADEQRCVMRFKPAVAPHKCAVLPISSGDE-VNAVVDEIAADLMD 594

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                  D     +G +++ AD +G P  V V    ++D  V ++ R + ++  +   EV
Sbjct: 595 SDMATRVDKSTASLGRRYSRADEVGVPFAVTVDFDTLADGTVTLRERDSTVQIRLPKSEV 654

Query: 435 INYA 438
               
Sbjct: 655 TKTV 658


>gi|51245616|ref|YP_065500.1| seryl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|67461743|sp|Q6AMD2|SYS_DESPS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|50876653|emb|CAG36493.1| probable seryl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 425

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 9/168 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G  E+  P L ++     +G+   + +++  + D +   +   PT
Sbjct: 179 RALTNFMLDLHTQKHGYTEVLPPFLVNSASLTATGQLPKFKEDLFAIKDWD---LYLIPT 235

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+I R    + ++LP  +      FR E     R   G++R  +F   +   F  
Sbjct: 236 AEVPVTNIHRDETIAEQDLPIKYTAFTPCFRSEAGSHGRDTRGLVRQHQFNKVELVKF-T 294

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           TPE S      +      +   LGL    ++  +G +G   S  + + 
Sbjct: 295 TPERSTDELESLLGDAEEVLQLLGLHYRVVKLCTGDLGFSSSKTYDIE 342


>gi|118579055|ref|YP_900305.1| seryl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166222758|sp|A1ALM7|SYS_PELPD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|118501765|gb|ABK98247.1| seryl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 422

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 13/215 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    + + + +      G +E+  P + + D    +G+   + +++ ++ D      
Sbjct: 168 GARMERALISFMLDLHTASHGYLEVLPPFMVNRDSMTGTGQLPKFEEDLFKMTDP---EY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP  +      FR E     +   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRGEILKKSDLPIRYAAYTPCFRREAGSYGKDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   P  S     K+     ++   L L    M   S  IG   +     E  +    
Sbjct: 285 VKFSH-PSQSAEELEKLTADAEKVLQLLELPYRVMALCSADIGFSAARTYDLEVWLPGQN 343

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              ++     F DF     N  F +          
Sbjct: 344 CYREISSCSCFGDFQARRANIRFREEEKSKPEFVH 378


>gi|304386837|ref|ZP_07369101.1| serine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304339091|gb|EFM05181.1| serine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 431

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 80/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D +       PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKTTQYLIPTAEVTLTNTVAGSILDEG 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 GLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|239831764|ref|ZP_04680093.1| seryl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824031|gb|EEQ95599.1| seryl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 407

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E   P +   +    +G+   + +++ R  D         PT
Sbjct: 156 RALGQFMLDLHTTEHGYTETMPPLMVRDEAVYGTGQLPKFSEDLFRTTD----GRWLIPT 211

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I   ++LP  +  +   FR E     R   G++R  +FL  +  S   
Sbjct: 212 AEVPLTNLVADEIVDAKSLPQRYTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSI-T 270

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             + S   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 271 DADSSIEEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQKTYDIEVWLPGQNTYREI 330

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 331 SSCSVCGDFQGRRMNARY 348


>gi|229541948|ref|ZP_04431008.1| glycyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229326368|gb|EEN92043.1| glycyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 512

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 113/356 (31%), Gaps = 53/356 (14%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++      + LPF   QI   FR+E+ P  
Sbjct: 204 MFKTYQGVTEDSTNELYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 263

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  K      +  Y + + R  L ++ M+ E+  +     
Sbjct: 264 FIFRTREFEQMELEFFCRPGEELK------WFDYWKQYAREFLLNLGMKEENLRLRDHEK 317

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        +    +FP            +   +           + +  E  
Sbjct: 318 EELSHYSN------ATTDFEYNFPFGWGELWGIASRTDYDLKRHMEYSGEDFTYLDQETN 371

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +P     S     V   F     Y+       +  DG    V               
Sbjct: 372 ERFVPYCIEPSLGADRVALAF-LIDSYAEE-----ELEDGTSRTVMH------------- 412

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                          ++AP+K +++ +             I++ LSK    V +D+ G  
Sbjct: 413 ------------LHPALAPYKAAVLPLSKK---LSAEARDIFSDLSKT-FMVDFDETG-S 455

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++   D +G P  +        D  V ++ R T  +  + + E+  +   +  
Sbjct: 456 IGKRYRRQDEIGTPFCITYDFDSRDDHMVTVRDRDTMEQTRVPITELKAFLEEKIK 511


>gi|238758836|ref|ZP_04620009.1| Histidyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238702944|gb|EEP95488.1| Histidyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 424

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 133/433 (30%), Gaps = 55/433 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTALWQRIEGSLKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LILLTARWWRALGITE-HVQLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD  E  V   +  +D                    +                  D  
Sbjct: 173 ARADYREALVTFLEQHVDKLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDEE 232

Query: 272 PENK------------------RVSARGIEVG--HIFY-----FGTKYSLPMSATFKG-- 304
            +                        RG++     +F       G + ++     + G  
Sbjct: 233 SKQHFAGLCELLDQASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLV 292

Query: 305 AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VC 361
               G+        + +G  R+V  V   + + K        A   + LI+     Q   
Sbjct: 293 EQLGGRATPAV--GFAMGLERLVLLVQAVNPEFKVP------AIIDVYLISSGEGAQSAA 344

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++   L  +     +     +   Q   AD  G  + +I+G   ++  +V +K  
Sbjct: 345 MQLAERVRDDLPNLKLMTNYGGGNFK--KQITRADKWGARVALILGENEIAAKQVVVKDL 402

Query: 422 LTGIREDMSLEEV 434
            +G +E ++  +V
Sbjct: 403 RSGEQETLAQADV 415


>gi|224026479|ref|ZP_03644845.1| hypothetical protein BACCOPRO_03236 [Bacteroides coprophilus DSM
           18228]
 gi|224019715|gb|EEF77713.1| hypothetical protein BACCOPRO_03236 [Bacteroides coprophilus DSM
           18228]
          Length = 514

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 119/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M         D   K  +   T + +  +           +PF   QI   FR+E+  R 
Sbjct: 198 MFTTEMGSTADGAMKVYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQ 257

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      + K   + L+    LG      R           
Sbjct: 258 FIFRMREFEQMEMQFF-VKPGTELEWFKKWKETRLKWHKALGFGDDHYR----------Y 306

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+   LA                             +   I       +     +H+   
Sbjct: 307 HDHEKLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTN 341

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD                       K+S      F     + +   +    IG  R+  +
Sbjct: 342 FDLSQH------------------EKFSGKSIKYFDPEINESYTPYVIETSIGVDRMFLS 383

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           ++ +++  + +           P ++AP K++++ +   D    +   +I   L K    
Sbjct: 384 IMSAAYCEETLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIMNDL-KFHFH 441

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +D+  + IG ++   D +G P  + +  + + D+ V +++R T  +E +++ E+ N  
Sbjct: 442 CQYDE-KDSIGKRYRRQDAIGTPYCITIDHQTLEDNCVTLRNRDTMKQERVAISELNNII 500

Query: 439 SHRFS 443
           + + S
Sbjct: 501 ADKVS 505


>gi|148979608|ref|ZP_01815613.1| histidyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145961693|gb|EDK26990.1| histidyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 422

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 139/428 (32%), Gaps = 30/428 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        V + ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVESAVKNVVSAHGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRSCIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGID-KHVRLELNSIGSTEDRANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     +        D            + + N  V+         S+   E+     
Sbjct: 178 RTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKQHF 237

Query: 272 -PENKRVSARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHYVQMGSYGI 319
               + + A GIE         G  Y         +  + A      G  +   +   G 
Sbjct: 238 AGLCELLDAVGIEYQVNERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGG 297

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSK-- 374
            A   V   +      + ++  +++   ++     + + A  +    A  ++  +L    
Sbjct: 298 KATPAVGFAMGL---ERLVLMMETLELTEVRRSVDVYMVAAGEGTMIAGMQLANQLRDTV 354

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V     G     QF  AD +G  + +++G   V+D+ V +K  + G +E +S  EV
Sbjct: 355 EGVRVMSHFGGGSFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVGGEQETVSQTEV 414

Query: 435 INYASHRF 442
               +   
Sbjct: 415 AAKVAALI 422


>gi|187923045|ref|YP_001894687.1| seryl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|238689594|sp|B2T1A6|SYS_BURPP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|187714239|gb|ACD15463.1| seryl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 431

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+  +      G    +  GQ A     +   + +    + G  E+
Sbjct: 133 DFEVKDHVDVGTPLGLDFETGAKLSGARFTMLRGQIARLHRALAQFMIDTHTQQHGYTEV 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + ++   +G+   +  +M R+    D N        T E  +T+  R  I    
Sbjct: 193 YTPYIVNPEILYGTGQLPKFADDMFRVEKGGDENTVTQYLISTSEISLTNTVRDSILEAD 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +       PE S  +  +M     
Sbjct: 253 ALPIKLTAHSPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQIVA-PETSYAALEEMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  V A     ++    +   F        
Sbjct: 312 TILQKLELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREISSCSNTESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           + +      +V 
Sbjct: 372 YRNAQGKPELVH 383


>gi|260893520|ref|YP_003239617.1| histidyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865661|gb|ACX52767.1| histidyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 429

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 121/441 (27%), Gaps = 54/441 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYG 90
            +   G+   LP        +  IIRE        E+  P  + A L+    G   D   
Sbjct: 6   FRLPPGVKDILPEEIPKWHYLEDIIRELAELYRFREIRTPIFEMALLFQRGVGEATDIVV 65

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM    DR  + +   P     +   +  H    R  P   Y +   FR + RP+ G  
Sbjct: 66  KEMYIFKDRGGRELALRPEGTAPVARAYVEHGLHTRPQPLKLYYVGPMFRHD-RPQMG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+R+F    A  F      +      +         R G+K   +   S           
Sbjct: 123 RNRQFHQFGAEIFGAPGPAADAE---VIFLLAEFLRRAGVKDWELELNS----------V 169

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                  +      +                +      V                   D 
Sbjct: 170 GCPVCRPQLVAALEEYLGKHASSLCPDCRQRLERNPLRVLDCKEDSCRQVVQQAPTPLDY 229

Query: 271 LPENKRVSARGIE-----VGHIFYF------GTKY---------SLPMSATF-KGADGKD 309
           L        RG++     +G  F        G  Y         S  + A    G  G+ 
Sbjct: 230 LCSRCESHFRGVQEELCSLGVPFRLNPRLVRGLDYYTGTAFEVLSPRLGAQNALGGGGRY 289

Query: 310 HYVQMGSYGIGA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            Y+     G           +  V   +E   D      P       + +       +  
Sbjct: 290 DYLVEECGGPSTPGVGFAVGLERVLLALEKQEDSP---LPKEEVRRGVFIAAADEEGRKR 346

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           +    ++   L   G     D    + + +Q   AD       +I+G++ +    V ++ 
Sbjct: 347 QAYWLRL---LRSAGLPADRDYASGRGLRAQLKQADRHRARWALILGAEELGRGMVRLRD 403

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +G + D+   EVI +   +
Sbjct: 404 LESGEQVDLPETEVIAWLRQK 424


>gi|308066924|ref|YP_003868529.1| Seryl-tRNA synthetase (serine--tRNA ligase) [Paenibacillus polymyxa
           E681]
 gi|171704681|gb|ACB54661.1| seryl tRNA synthetase [Paenibacillus polymyxa]
 gi|305856203|gb|ADM67991.1| Seryl-tRNA synthetase (Serine--tRNA ligase) [Paenibacillus polymyxa
           E681]
          Length = 427

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +  +   G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYKGLGARLERALINFMMDLHSSEHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKL--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            D      PT E  +T+  R  I +   LP  +      FR E     R   G++R  +F
Sbjct: 222 RDTEYYLIPTAEVPVTNYHREEIMNAEQLPKYYVAYSSCFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +     + P+ S     KM  +  R+   LGL    +   +G +G
Sbjct: 282 NKVEMLKL-VHPDTSYEELEKMTNNAERVLQLLGLPYRVLALCTGDMG 328


>gi|161350030|ref|YP_397784.2| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 425

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGAKLERALINFMLDIHTKNGYLELMPPALVNSESLRGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNEIIDPKQLPIKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ K+      I  +L L    +   +G +G   S     E  + +  
Sbjct: 289 YWF-CDPSKSLEAHKKITSDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|119963161|ref|YP_947256.1| glycyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|119950020|gb|ABM08931.1| glycyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 461

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 72/460 (15%), Positives = 148/460 (32%), Gaps = 62/460 (13%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS---VPTLQSADLWV 81
            + + G I+  S+  + + PLG +  +N+     +     G  ++       +    +W 
Sbjct: 19  FVFQAGEIYGGSRSAWDYGPLGAELKENIKRQWWQSM-VRGREDVVGLDSSVILPRQVWE 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  + +      L +       Y   H E   +  +                  +   
Sbjct: 78  ASGHVEVFSD---PLVECLSCHKRYRADHLEEEYEEKKGRPPENGLKDIACANCGTRGAW 134

Query: 142 -ELRPRFGVMRSREFL---MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            E +   G++++  FL     D     L PE ++     +FV++  +             
Sbjct: 135 TEPQEFSGLLKT--FLGPVANDEGMHYLRPETAQ----GIFVNFNNVLTT---SRKKPPF 185

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             G IG    +E         T+ F   +   F  P  + ++        +         
Sbjct: 186 GIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHQYWMKERMSWYTDLGIR 245

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKG 304
             +    E   + L    + +    ++ + F F              T + L   A   G
Sbjct: 246 EDNLRFFEHPLEKLSHYSKGTT---DIEYRFGFQGSEWGELEGIANRTDFDLSTHAKASG 302

Query: 305 AD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDS 343
            D         + +   +     G  R   A +  ++                 +     
Sbjct: 303 TDLSYFNQATNERYTPFVIEPAAGLTRSFMAFLIDAYTEDEAPNAKGGVDVRTVLKLDPR 362

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPL 402
           +AP K +++ + + ++      + + A+L K    D  +DD G  IG ++   D +G P 
Sbjct: 363 LAPVKAAVLPL-SRNEDLSPKAKALGAQLRKNWNID--FDDAGA-IGRRYRRQDEIGTPF 418

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + V    + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 419 CITVDFDTLEDQAVTIRERDTMSQERVSLDKVEGYLAARL 458


>gi|78713171|gb|ABB50348.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 431

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 178 NGAKLERALINFMLDIHTKNGYLELMPPALVNSESLRGSGQLPKFSNESFKCS---NDDL 234

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 235 WLSPTAEVPLTAFHRNEIIDPKQLPIKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 294

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ K+      I  +L L    +   +G +G   S     E  + +  
Sbjct: 295 YWF-CDPSKSLEAHKKITSDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 353

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 354 CYREISSCSNCLDF 367


>gi|71737900|ref|YP_275259.1| seryl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485413|ref|ZP_05639454.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625403|ref|ZP_06458357.1| seryl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649314|ref|ZP_06480657.1| seryl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298487528|ref|ZP_07005570.1| Seryl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|123635963|sp|Q48H74|SYS_PSE14 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71558453|gb|AAZ37664.1| seryl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298157912|gb|EFH98990.1| Seryl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330866860|gb|EGH01569.1| seryl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330987919|gb|EGH86022.1| seryl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 426

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ ++    +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKITREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PEDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|304391793|ref|ZP_07373735.1| seryl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303296022|gb|EFL90380.1| seryl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 426

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 14/210 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   +     E++ P L  +++    G    +  ++ + +D         PT
Sbjct: 176 RALGQFMVDLHVDEHAYHEVAPPVLVRSEVLFGVGNLPKFEDDLFKTSD----DRYLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I   + LP  +  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 SEAPLTNLVRESILDEKTLPRRYTALTNCFRAEAGSAGRDTRGMLRQHQFAKCEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQV 221
           TP+ S     +M      +  RLGL    ++  +G +G      L  E  +       ++
Sbjct: 291 TPDNSDAEQQRMVGCAEEVLKRLGLHYRVVKLCTGDLGFSARRTLDIEVWLPGQDTFREI 350

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  DF     +  +        +   
Sbjct: 351 SSCSTCGDFQARRMDARYRPEGEKQPVHVH 380


>gi|331010750|gb|EGH90806.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 358

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ ++    +  + 
Sbjct: 102 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKITREGEADLY 161

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 162 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 221

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 222 QIVA-PEDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 280

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 281 YREISSCSNCGDF 293


>gi|210623920|ref|ZP_03294129.1| hypothetical protein CLOHIR_02081 [Clostridium hiranonis DSM 13275]
 gi|210153284|gb|EEA84290.1| hypothetical protein CLOHIR_02081 [Clostridium hiranonis DSM 13275]
          Length = 423

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 11/188 (5%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +   ++            G  E+  P + + D +  +G+ 
Sbjct: 154 RAGKI--TGSRFTLYKGLGARLERSLINFFLNTHTADHGYTEVLPPFMANRDSFCGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M +L           PT E  +T+I R+ I +   LP  +      FR E    
Sbjct: 212 PKFEEDMFKL---EGLEYFLVPTAEVPVTNIHRNEILTADQLPIKYCAYTPCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F L PE S     K+ +    I   LGL    ++  +G +
Sbjct: 269 GRDTRGLVRQHQFNKVELVKFVL-PENSYDELEKLTMDAEEILQLLGLPYRRVKICTGDL 327

Query: 203 GGDLSHEF 210
           G   + +F
Sbjct: 328 GFTAAFKF 335


>gi|186475408|ref|YP_001856878.1| seryl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|238691271|sp|B2JEF5|SYS_BURP8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|184191867|gb|ACC69832.1| seryl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 432

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D EI  H  +    G+  +      G    L  GQ A     +   + +    + G  E+
Sbjct: 133 DFEIKDHVDVGTPLGLDFETGAKLSGARFTLLRGQIARLHRALAQFMIDTHTQQHGYTEV 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + ++   +G+   +  +M R+     +         T E  +T+  R  I    
Sbjct: 193 YTPYIVNPEILFGTGQLPKFADDMFRVEKGGGENTVTQYLISTSEISLTNTVRDSIVDSN 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +     ++P+ S  +  +M     
Sbjct: 253 ELPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQI-VSPDTSYDALEQMVAHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  V A     ++    +   F        
Sbjct: 312 VILQKLELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREISSCSNTEAFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           F +      +V 
Sbjct: 372 FRNAQGKPELVH 383


>gi|312196061|ref|YP_004016122.1| glycyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311227397|gb|ADP80252.1| glycyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 461

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 75/468 (16%), Positives = 152/468 (32%), Gaps = 73/468 (15%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQS 76
           L  R G +   S      +  + + PLG +  +NV     +   Q R   + +    + +
Sbjct: 14  LAKRRGFVFPSSEIYGGLRASWDYGPLGVELKNNVKRAWWKSVVQGRDDVVGLDSCVILA 73

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNLPFTFYQI 135
            ++W  SG  + +      L +  +    Y   H EE            +   P    ++
Sbjct: 74  REVWETSGHVEVFVD---PLTECTNCHKRYRADHLEEAFE-------AKHGRAPAGLAEV 123

Query: 136 QLKFRD------ELRPRFGVMRSREFLMKD-AYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                       E +   G++++    ++D +    L PE ++     +F++Y  +    
Sbjct: 124 VCTNCGTRGAFTEPKMFNGLLKTYLGPVEDPSGLAYLRPETAQ----GIFINYANVQST- 178

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                      G IG    +E         T+ F   +   F  P E+  + D       
Sbjct: 179 --ARRKPPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVPPGEDEQWHDYWITERT 236

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYS 295
                      +  H E   +   +    S R +++ + F F              T Y 
Sbjct: 237 RWYTELGIKPDNLRHYEHPKE---KLSHYSKRTVDIEYRFNFAGLPWGELEGIANRTDYD 293

Query: 296 LPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------- 337
           L   +   GAD               +     G  R     +  ++D             
Sbjct: 294 LTAHSKGSGADLSFFDQATNTRFTPFVIEPAAGVDRATLTFLLDAYDEDEAPNTKGGVDR 353

Query: 338 ---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              +     +AP K +++ +  H          + A L +   +V +DD    IG ++  
Sbjct: 354 RIVLRLDPRLAPVKAAVLPLSRH-ADLSPVARDLAADLRRHW-NVEYDDSQA-IGRRYRR 410

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            D +G P  V V    ++D  V I+ R +  ++ +++++V  Y + + 
Sbjct: 411 QDEIGTPYCVTVDFDTLNDQSVTIRERDSMAQQRIAIDKVATYLNAQL 458


>gi|307151559|ref|YP_003886943.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306981787|gb|ADN13668.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 430

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG      +   + + Q   G +E+  P L ++     +G+   + +E  + +   +  +
Sbjct: 175 LGAALERALINFMLDRQIEAGYLEVMPPILINSTSLQGTGQLPKFSEESFKCS---EDEL 231

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I     LP         FR E     R   G++R  +F   + 
Sbjct: 232 WLAPTAEVPVTNLYRDEIIDLDQLPIKHCAYTPCFRREAGSYGRDTKGLIRLHQFNKVEL 291

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + P+ S+  +  +      I   L L    +   +G +G   +     E  + +  
Sbjct: 292 VKI-VPPDTSEAEHQALVSDAEAILQALKLPYRVIELCTGDLGFGAAKCYDLEVWLPSSN 350

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDI 242
              ++    +F DF     N  F + 
Sbjct: 351 TYREISSCSNFRDFQARRANIRFKEK 376


>gi|195952750|ref|YP_002121040.1| seryl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|229890220|sp|B4U7F1|SYS_HYDS0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|195932362|gb|ACG57062.1| seryl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 421

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +   + E   + G  EM VP L      V +G+   + +E+  + D +   +   PT 
Sbjct: 176 RALINFMLEINAKNGYQEMIVPHLVKPQTLVGTGQLPKFQEELYYVKDDD---LYLIPTA 232

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  + ++F+  I    +LP         +R E     +   G++R  +F   +     + 
Sbjct: 233 EVPLVNVFKDTILKEDDLPINLTAYTPCYRREAGSHGKDVKGLIRQHQFDKVELVKI-VH 291

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVF 222
           P+ S     ++  +   I   L L    +   SG IG   S     E  + +     ++ 
Sbjct: 292 PDSSYDELERLLSNAEEILQLLELPYRVVALCSGDIGFSASKTYDIEVWIPSQNKYREIS 351

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVE 250
              +  DF     N  F D    N  V 
Sbjct: 352 SCSNCEDFQARRANMRFKDKTGKNRFVH 379


>gi|110834720|ref|YP_693579.1| histidyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|123149360|sp|Q0VNE1|SYH_ALCBS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110647831|emb|CAL17307.1| Histidyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 422

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 139/440 (31%), Gaps = 61/440 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP        + A +       G  E+ +P ++  DL+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTGLWQWLEAKVGAVLASYGYQEIRMPIVEQTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPT-------HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             DRN  ++   P          E    ++              +     FR E RP+ G
Sbjct: 70  FDDRNGDSLTLRPEGTASCVRACEQHGLLYNQT--------QRLWYAGPMFRHE-RPQAG 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      +F +T          + +   R++  LGL+   +  E   +G     
Sbjct: 121 --RYRQFHQIGVETFGMTGPDIDAE---VILLTARLWKALGLED-KVVLELNSLGDSADR 174

Query: 209 EFIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAA 258
                A     +        D            + S++T   +++     +  +    A 
Sbjct: 175 ARYRDALVDYLKAHFDDLDGDSQKRLERSPLRVLDSKDTGTREVLKGAPQLADYLNDEAV 234

Query: 259 TSDVHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD 306
                 + L D+     +      RG++     +F       G + ++     + G    
Sbjct: 235 AHFEGLKALLDASGIAYKVNPYLVRGLDYYGKTVFEWVTDALGAQGTVCAGGRYDGLVEQ 294

Query: 307 --GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        + +G  R++  +IE          P+  AP  + ++ +          
Sbjct: 295 LGGKPTPAV--GFAMGIERLIL-LIEQER-------PELSAPVDVYVMAMGDVLAPTMAL 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
            E +   L            G    SQ   AD  G  + +I+G   ++   V +K  R  
Sbjct: 345 SEHLRDALPGRAI--QLHCGGGSFKSQMKKADRSGAAVGLIMGEDELASGVVTVKPLRGQ 402

Query: 424 GIREDMSLEEVINYASHRFS 443
           G +  ++  +V N  +    
Sbjct: 403 GEQVQVAQGDVANAVTSFLE 422


>gi|284929345|ref|YP_003421867.1| seryl-tRNA synthetase [cyanobacterium UCYN-A]
 gi|284809789|gb|ADB95486.1| seryl-tRNA synthetase [cyanobacterium UCYN-A]
          Length = 427

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 75/214 (35%), Gaps = 12/214 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + + + ++   +G IE+  P L +++    +G+   + +E        +  + 
Sbjct: 176 GAALERALISYMLDQHIASGYIEVMPPILVNSNALRGTGQLPKFAEESFFC---REDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +++ + I     L          FR E     +   G++R  +F   +  
Sbjct: 233 LSPTAEVPVMNLYSNEILEKEALSIRHCAFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P+ S+  + ++  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KI-VHPQDSEIEHQRLVENVESILQNLKLPYRILELCTGDLGFGAAKCYDLEVWLPSSNS 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             ++    +  DF     N  F +     +    
Sbjct: 352 YREISSCSNCWDFQARRANIRFREKGQKGTKYVH 385


>gi|302538647|ref|ZP_07290989.1| seryl-tRNA synthetase [Streptomyces sp. C]
 gi|302447542|gb|EFL19358.1| seryl-tRNA synthetase [Streptomyces sp. C]
          Length = 427

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 12/254 (4%)

Query: 9   PILQENPRDAEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           P L + P D      +L L      +     G + +   G      +      E    G 
Sbjct: 129 PDLGDTPLDHVELCDRLGLVDFARGVKLGGNGYWLYTGAGAALEWALIDFFNREHYAAGY 188

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             M  P L + +    +G++  +  ++  + A  +D+     PT E  + +++R  I   
Sbjct: 189 TFMLPPHLLTEESGFAAGQFPKFYDDVFHVQAGEDDRKSFLLPTAETAILNVYRDEILPT 248

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LPF  +     +R E         G +R  +F   + + F   P+ ++ ++ ++    
Sbjct: 249 DTLPFKAFAYTPSYRREAGSHRSSERGTIRGHQFNKVEMFQFAA-PDQAEEAFRELVDRT 307

Query: 182 LRIFHRLGLKS----IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +  +LGL      +  R  S  +      E  + +     +V  +    D+     N 
Sbjct: 308 EMLVEKLGLHYQTTLLAARDASATMRMTYDVEVWIPSIASYKEVSSASWAGDYQARRANI 367

Query: 238 DFDDIISLNSIVEQ 251
            +       +    
Sbjct: 368 RYRPAAGGPTAHVH 381


>gi|229520458|ref|ZP_04409883.1| seryl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|262402530|ref|ZP_06079091.1| seryl-tRNA synthetase [Vibrio sp. RC586]
 gi|229342556|gb|EEO07549.1| seryl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|262351312|gb|EEZ00445.1| seryl-tRNA synthetase [Vibrio sp. RC586]
          Length = 435

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +   ++ G  E
Sbjct: 135 DFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQFARLHRAIAQFMLDLHTDQHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           + VP L +A+    +G+   +G+++           D   + +   PT E  +T++ R  
Sbjct: 195 LYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLDLPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|162139170|ref|YP_603425.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 426

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 AAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEA-------VQDMLEALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       I L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDIYLAVLGDG- 339

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 340 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQEVEVSFED 412


>gi|162139093|ref|YP_599515.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 426

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 SAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEAVKAML-------EALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       I L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDIYLAVLGDG- 339

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 340 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQELEVSFED 412


>gi|311280197|ref|YP_003942428.1| seryl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308749392|gb|ADO49144.1| seryl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 430

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D ++  H  +     G+    +    G    +  GQ       +   + +    + G  E
Sbjct: 133 DFDVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEILD 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMDALEEMTSH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLELLGLPYRRVALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDF 365


>gi|302039659|ref|YP_003799981.1| histidyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300607723|emb|CBK44056.1| Histidyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 418

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 136/424 (32%), Gaps = 26/424 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG+   LP        +    R+   R G  E+ VP  ++  L+  S     D   KEM 
Sbjct: 6   KGVKDLLPEESPRWRFIEDTARQWALRYGFQEIRVPIFETTTLFARSIGASTDIVEKEMY 65

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             ADR+  ++   P         F  H ++    P  +      FR E RP+ G  R R+
Sbjct: 66  TFADRDGSSLTLRPEGTAGTVRAFIEHNRAADPRPQKYCYAGPMFRHE-RPQAG--RLRQ 122

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F      SF ++   +      +     R+   L L  + +      I      E     
Sbjct: 123 FHQFGVESFGVSDPRADVE---VISLLWRLLSDLTLPGLTLE-----INNLGYTEDRARY 174

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                  + + +  L+  V +  +       + +    ++    
Sbjct: 175 KPLLVAFLNGVQSRLCGNCQRRIETNPLRVLDCKVPECRSATEDAPRLADSLSSEARDHF 234

Query: 275 KRVSARGIEVGHIFYF------GTKYS--LPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +RV++    VG  F+       G  Y        T      ++     G Y     ++  
Sbjct: 235 ERVTSGLQSVGIPFHMNPRLVRGLDYYCLTAFEVTCSHLGAQNAVGAGGRYDGLVEQLGG 294

Query: 327 AVIESSHDGKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           A + +     G     ++ P++VA   I  + + A           +   L + G     
Sbjct: 295 AAVPAVGFAVGLERIALMLPETVAVPSIPRVYVAAFGTQAVGLGFTLLDELRRTGVPADM 354

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D     + +    AD L     +++G   V+     +++  T  +ED+ + ++ +    R
Sbjct: 355 DFRAASLKAHLRQADRLNALYTILLGDDEVTKGVATVRNMQTKAQEDVPIPDLASALRTR 414

Query: 442 FSNN 445
             N 
Sbjct: 415 LVNR 418


>gi|269798268|ref|YP_003312168.1| histidyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094897|gb|ACZ24888.1| histidyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 423

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 136/443 (30%), Gaps = 51/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G   +LP        +   +RE     G  E+  P  +   L++       D 
Sbjct: 1   MAIRKPRGTQDFLPEQMINWHYIEQRMREICKVYGFNEIRTPAFEETKLFLRGIGETTDV 60

Query: 89  YGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM      D    +    P +       +  +    +     +Y +   FR + +P+
Sbjct: 61  VQKEMYTFTTGDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHD-KPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
            G  R R+F    A                M V   ++    GLK + +   S       
Sbjct: 120 AG--RYRQFHQFGAEVLGSQSPVVDSEVICMVV---QLLKDFGLKDLNVEVNSVGCPTCR 174

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+  +    F    +  + Q+        +  P    D  +    +  +           
Sbjct: 175 PVYREKLIAFF---EPKKEQLCSDCQERLYKNPLRILDCKNETCKSLSIGAPEIHEHLCE 231

Query: 261 DVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT----------- 301
           + H+            +          RG++      F  +Y+ P+ A            
Sbjct: 232 ECHDHFEELKTYLTAANVQYTLNPRLVRGLDYYTKTAFEVQYT-PLGAQSAVAGGGRYDG 290

Query: 302 -FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG         + +G  R++ A+       K  + P+     + S   +   D  
Sbjct: 291 LVEELDGPHTPAI--GFAMGMERLLLAL------EKQNLLPEPT--VEPSAFVVALGDAA 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KI  +L  +   V  D  G+ + +Q   A+ +     +I+G   +   +  I+ 
Sbjct: 341 KVE-AFKICQKLRSLDIPVEMDGQGKSMKAQLKYANKINAKYVIILGDDELVRKEAIIRF 399

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             T  +E +SL+ V    +    
Sbjct: 400 MDTSEQETVSLDTVAERITSLVK 422


>gi|187935133|ref|YP_001885234.1| histidyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|187723286|gb|ACD24507.1| histidine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 417

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 128/422 (30%), Gaps = 35/422 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+     G  E+  P  +  +L++       D   K
Sbjct: 6   QAPKGTKDMLPQDAYKWHYVENTFRDVVKTYGIREIRTPMFEHTELFLRGVGDTTDIVQK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+ ++++   P         F  +       P   + I   FR E        R
Sbjct: 66  EMYTFNDKGNRSVTLKPEGTAPAVRAFIENRLFNEAQPTKLFYITPAFRYE---NVQKGR 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP----------MRAESGP 201
            R+F       F            K+    +    +LGLKS+            RA+   
Sbjct: 123 LRQFHQCGIEMFGSKEPTMDVEAIKVA---MDTLSKLGLKSLSLHINNLGCPTCRAKYNE 179

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E            F               +     +   +           + 
Sbjct: 180 ALKKFLEENYENLCETCKSRFEKNPMRILDCKERKCNEITKNAPQILDYVCEECETHFNK 239

Query: 262 VHNE-KLFDSLPENKRVSARGIEVGH--IFYF-GTKYSLPMSATFKG---ADGKDHYVQM 314
           V     +        +   RG++     IF      +++     +       G      +
Sbjct: 240 VKEYLDILGISYVVDQGIVRGLDYYTKTIFEIVNDDFTVCGGGRYDKLIEELGGPEMPAV 299

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G + IG  R++  +     + +GI  P+      +  + I A  +  ++   KI   L K
Sbjct: 300 G-FAIGEERIIMTL-----ENEGIEIPNEN----MVDLYIGARGEAEKNYAFKIAHDLRK 349

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G     + MG  I ++   A+ +G     I+G   + ++++ +K    G    +SL+ +
Sbjct: 350 LGVKCEINHMGRSIKAEMKYANKIGSKFTTILGEDELQNNQINLKRMEDGEIFTLSLDNI 409

Query: 435 IN 436
             
Sbjct: 410 EE 411


>gi|168704391|ref|ZP_02736668.1| threonyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 142

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRS 152
           ++ +   D+ +   P        +++S  +SYR+LP    ++   +R E      G+ R 
Sbjct: 1   MKTSRDRDEKLCLRPMCCPHHIQVYKSKARSYRDLPIRIAELGNMYRFERSGVVGGLSRV 60

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-GDLSHEFI 211
           R   + DA+ F + P+  KH    +     + +  LG+     R        G  S +++
Sbjct: 61  RCMTLNDAHLF-VRPDQVKHEIAGVLQLMKKAYADLGITEYRFRLSKNADPDGPPSDKYV 119

Query: 212 VLADTGET 219
                 E+
Sbjct: 120 DNPAMWES 127


>gi|156846538|ref|XP_001646156.1| hypothetical protein Kpol_1039p49 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116829|gb|EDO18298.1| hypothetical protein Kpol_1039p49 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 663

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 121/397 (30%), Gaps = 82/397 (20%)

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLR- 183
           PF    I   FR+E+ PR G++R REFLM +   F L PE            + +S+L  
Sbjct: 249 PFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-LDPEDKSHPKFEEVKDIKLSFLPR 307

Query: 184 ----------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                     I   +G        ++  +G  ++  +  L   G  +             
Sbjct: 308 EVQESGSTEPIVKTIGEAVESKMVDNQTLGYFIARIYKFLVTIGVDESKMRFRQHMANEM 367

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR---------GIEV 284
           +          L +          A    ++  +     + K V  +           E+
Sbjct: 368 AHYAADCWDAELKTSYGWIECVGCADRSAYDLTVHSIKTKEKMVVRQKLETPVEVTQWEI 427

Query: 285 GHIFYF-GTKYS-----------------LPMSATFKGADGK------------------ 308
                  G K+                  L  +A    AD K                  
Sbjct: 428 DLTKKLFGPKFRKDAPKVEAFLLGMSQEELADNAEKLKADNKIVLKVDGVEGDVELDSNF 487

Query: 309 -------------DHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAPFK 348
                        +    +     G  R++ +V E S+           + +P  VAP K
Sbjct: 488 VTIEKRTKVEHVREFVPNVIEPSFGIGRIIYSVFEHSYWNRPEDTARSVLSFPPLVAPTK 547

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + L+ +  H  +      ++   L K       DD G  IG ++A  D LG P  V +  
Sbjct: 548 VLLVPLSNHKDLA-PITSQVSKILRKEKIPFKVDDSGVSIGKRYARNDELGTPFGVTIDF 606

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               D  V ++ R +  +   S+E+VI        NN
Sbjct: 607 DSTKDGSVTLRERDSTKQVRGSVEDVIKAIRDITYNN 643



 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G     NV  I R+        +E+    L   ++   SG  D +   M
Sbjct: 41 SGLYDYGPPGCAFQANVVDIWRKHFILEEDMLEVDCTMLTPHEVLKTSGHVDKFSDWM 98


>gi|146304364|ref|YP_001191680.1| Ser-tRNA(Thr) hydrolase [Metallosphaera sedula DSM 5348]
 gi|145702614|gb|ABP95756.1| Ser-tRNA(Thr) hydrolase [Metallosphaera sedula DSM 5348]
          Length = 386

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +    ++  ++  S + +    P  ++P  + ++ ++  D V     E     L + G  
Sbjct: 247 VDVGLLLYYILLKSREKQTPTLPLWLSPIHVRILKVRKEDNV-----EDFAKSLKERGIR 301

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD+ E +G++   A +   P   I G + +    + ++ R T  ++ M+++E+    
Sbjct: 302 VQVDDLEEGLGNKIRRAGMDWIPFVAIAGERELKTGNLTVRVRETSEQKPMTVDEIERVV 361

Query: 439 SH 440
             
Sbjct: 362 KS 363


>gi|301336273|ref|ZP_07224475.1| seryl-tRNA synthetase [Chlamydia muridarum MopnTet14]
          Length = 428

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   +  +Q   G      P L   D+   SG+   +  +  R
Sbjct: 159 GSGWPAYKNTGVLLEWALLTYLLNKQQSHGFQLWLPPLLVKRDILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D  ++++   PT E V+       I + ++LP  +      FR E         G++R
Sbjct: 219 VED-GEQSLFLIPTAEVVLNGFHSQEILNEQDLPLYYAAFTPCFRREAGAGGSHERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   + ++F  TPE  + +Y KM      I   L L        +G +
Sbjct: 278 VHQFHKIEMFAF-TTPEQEETAYQKMIGIVEEILSELQLPYQLSLLSTGDM 327


>gi|302815693|ref|XP_002989527.1| hypothetical protein SELMODRAFT_269525 [Selaginella moellendorffii]
 gi|300142705|gb|EFJ09403.1| hypothetical protein SELMODRAFT_269525 [Selaginella moellendorffii]
          Length = 597

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKI 349
            +        +     +     G  R++  + E   D +G          +P  VAP K 
Sbjct: 423 FNKQVTKKSKEKFTPSVIEPSFGIGRIIYCLFEHCFDTRGGVDGQLNVFRFPALVAPVKC 482

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++  +   +    +    I A+L + G     D  G  IG ++A  D +G P  + V   
Sbjct: 483 TVFPL-VQNPKLDEIARAISAKLREAGIANKIDTTGRSIGRRYARTDEIGVPFAITV--- 538

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              D  V ++ R +  +  + LEEV++  +   +  R
Sbjct: 539 DSEDG-VTVRDRDSKDQIRVPLEEVVDLIADMSAGKR 574



 Score = 46.5 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           LPF   QI   FR+E+ PR G++R REF + +   F
Sbjct: 182 LPFGAAQIGQAFRNEIAPRQGLLRVREFTLAEIEFF 217


>gi|322420563|ref|YP_004199786.1| histidyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126950|gb|ADW14510.1| histidyl-tRNA synthetase [Geobacter sp. M18]
          Length = 428

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 135/419 (32%), Gaps = 45/419 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP   +   ++ A  R      G  E+ +P L+  +L+  S     D   KEM 
Sbjct: 7   KGFNDILPGEVEKWQHIEATARRVFELYGLSEIRIPILEKTELFCRSIGDATDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+    +   P     +   +  H     +     Y +   FR E RP+ G  R R+
Sbjct: 67  SFEDKGGNKVTMRPEGTASVMRAYVEHKMHALDPVARLYYMGPMFRYE-RPQKG--RYRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F    A    +           M       F  LGL    ++  S       P+  +   
Sbjct: 124 FHQIGAEITGVAAPTVDAQVLTML---THFFQELGLTEPSLQINSLGCPCCRPVYREALK 180

Query: 209 EF------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           +F      ++  D            +D              S+   +      +   +  
Sbjct: 181 KFLLDRIDMLCDDCKRRYDTNPLRALDCKSTGCQEATQGAPSMLDYLCAECGDHFDRTRK 240

Query: 263 HNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG---ADGKDHYV 312
           H E +      NKR+  RG++              G + ++     + G     G     
Sbjct: 241 HLELVGTPYTLNKRM-VRGLDYYTRTTFEMVTTLLGAQSAVAAGGRYDGLISEIGGPQIP 299

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +G + +G  RV   + E     +    PD         + I A  +       ++ + L
Sbjct: 300 GIG-FAMGVERVALLLAEKDFSRR----PD---------LFIAALGEEAHAEAFRLMSAL 345

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            ++G  V  D  G+ + SQ   AD       +I+G   +S     +K+   G + D++L
Sbjct: 346 QRLGFAVEIDYEGKSLKSQMRRADKFNSRFTLIIGGDELSRGTAPLKNMDGGTQADVAL 404


>gi|254490108|ref|ZP_05103300.1| histidyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224464696|gb|EEF80953.1| histidyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 418

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 137/432 (31%), Gaps = 52/432 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP        V   ++   +  G  E+  P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDLLPEVTPYWQAVEGTMKTVLSGYGYQEIRFPIVEKTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            +    +      + +   FR E RP+ G  R R+F
Sbjct: 70  FDDRNGDSLTLRPEGTAGCVRAAMQNGMLNQT--QRLWYMGPMFRHE-RPQKG--RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 ++  +          M +   R++  LGL  I ++     I    S E  +   
Sbjct: 125 HQLGVEAYGFSGPDIDAE---MIMMTARLWKALGLTGISLQ-----INSLGSTEARLAYR 176

Query: 216 TGETQVFCSKDFM-----------------DFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               Q F +                     D   P      ++            +    
Sbjct: 177 EELIQYFEAHQEQLDEDSQRRLHSNPLRILDSKNPEM-QALNEAAPKLIDHLDAESKADF 235

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKD 309
               H         E      RG++     +F       G++ ++     + G  A    
Sbjct: 236 EQLCHTLDKVGIRYEINPRLVRGLDYYSKTVFEWVTDQLGSQGTVCAGGRYDGLVAQLGG 295

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-ACEKI 368
                  + IG  R++ A++E++           +A     L+ +     +      E +
Sbjct: 296 KDATAIGFAIGLERLI-ALLEATDA------LPEIAQTDAYLVAVGDAAAIQAPLLAEAL 348

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L  +         G    SQF  AD  G    +I+G + V++  + +K   TG +E 
Sbjct: 349 RDQLPALKLITHC--GGGSFKSQFKRADRSGARWTLILGEEEVNNESIGVKTMATGEQET 406

Query: 429 MSLEEVINYASH 440
           +S  ++  Y S 
Sbjct: 407 ISWYDLAAYLSQ 418


>gi|59798520|sp|Q6A964|SYG_PROAC RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
          Length = 472

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 119/398 (29%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 132 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 185

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 186 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------- 232

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                  G D              Q +       +     N D 
Sbjct: 233 -----------------------GTDEEW----------HQYWIDVRTAWYTDLGINPDN 259

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 260 LRHYEHPKEKLSHYSKRTVDVEYKFGFSGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 317

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 318 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 374

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 375 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 431

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V I+ R T  ++ +S+++V  Y   + 
Sbjct: 432 TVDFDSLEDDAVTIRERDTMAQQRVSIDKVEEYLGGKL 469


>gi|15834727|ref|NP_296486.1| seryl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270284894|ref|ZP_06194288.1| seryl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270288922|ref|ZP_06195224.1| seryl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|13878799|sp|Q9PLJ7|SYS_CHLMU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|7190137|gb|AAF38982.1| seryl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 428

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   +  +Q   G      P L   D+   SG+   +  +  R
Sbjct: 159 GSGWPAYKNEGVLLEWALLTYLLNKQQAHGFQLWLPPLLVKRDILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D  ++++   PT E V+       I + ++LP  +      FR E         G++R
Sbjct: 219 VED-GEQSLFLIPTAEVVLNGFHSQEILNEQDLPLYYAAFTPCFRREAGAGGSHERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   + ++F  TPE  + +Y KM      I   L L        +G +
Sbjct: 278 VHQFHKVEMFAF-TTPEQEEIAYQKMIGIVEEILSELQLPYQLSLLSTGDM 327


>gi|257052836|ref|YP_003130669.1| seryl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691599|gb|ACV11936.1| seryl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 451

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 10/227 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G Y       +    +   +R+     G  E+  P   S++    +G+   +  +  +
Sbjct: 164 GGGFYFLKGDAARLEHALIQFMRDIHREQGYEEVFPPIPVSSESMTGTGQLPKFADDAYK 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMR 151
           L    ++ +   PT E  +T+++R  I    +LP         FR E         G++R
Sbjct: 224 L---EEEDLWLCPTAEVPVTNMYRDEILLDDDLPLKHQAYTPNFRQEAGEHGTETRGIVR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHE 209
             +F   +  +F + PE S      +      +  RL L    +   +G        +++
Sbjct: 281 VHQFNKVELVNF-VEPEESDERLEGLLDEAEEVLRRLELPYRILELCTGDLTFASAKTYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             V A   + +   ++      + S +   D       I  +     
Sbjct: 340 VEVWAPGDDMEEGPTEGGRWLEVSSASNFEDFQARRAGIRYRPERHE 386


>gi|309775571|ref|ZP_07670571.1| histidine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916665|gb|EFP62405.1| histidine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 445

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 130/445 (29%), Gaps = 51/445 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSY 89
           M +Q  +G    LP        +  +IR+        E+  P  +  +++       D  
Sbjct: 1   MNYQVPRGTQDILPEEIGKWHRLEELIRQFTYVYNYQEIRTPIFEHTNVFKRGNDSSDMV 60

Query: 90  GKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
            KEM      N    +   P     +   F  H    Y +LP   Y +  + R E RP+ 
Sbjct: 61  NKEMYTFQLENSSTSLTLRPECTAGVARAFVEHKMYGYADLPIKMYYVGPQCRHE-RPQK 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R F                     +  S++     LGLK + +   +  +G D S
Sbjct: 120 G--RMRIFNQFGVEVIGAKSPLLDVETIALGWSFI---SALGLKDMKVLINT--LGDDES 172

Query: 208 HEFIVLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                 A              D       +     D  +     + +     A   +  +
Sbjct: 173 RAAYRKALKEHFKNDISHMCADCQRRYEQNPLRILDCKVDHELPIMKNVPKMADYLNEES 232

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSAT--------FKG- 304
           +  F  + E         EV      G  Y           +  M A         + G 
Sbjct: 233 KAYFKQVLEGLDALGIPYEVDDKLVRGLDYYTHTVFEVVSVNKEMGAQSTVFAGGRYDGL 292

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIES---SHDGKGIIWPDSVAPFKISLINIKAHDQ 359
               G    +    + +G  R++ A+        D +G+            ++ +     
Sbjct: 293 VEYFGGPQGMSGIGWAMGLERLLIALEAEGISLADEEGL---------DAYVLCLSP--- 340

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++   L   G     D +     +QF   D     + +++G   V +  V +K
Sbjct: 341 EAATTALQVVTELRAAGYRSDMDYLNRSFKAQFKTVDRKKAKVAIMIGETEVQNGTVNMK 400

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
              T  +  ++L+ V++     F  
Sbjct: 401 EIETQEKLTVALDAVVDTMDAMFHE 425


>gi|289549035|ref|YP_003474023.1| seryl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182652|gb|ADC89896.1| seryl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 424

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 12/208 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +   + +     G  E+  P L   ++ V +G+   + +++ +        +
Sbjct: 170 WGAKLERALINFMLDLHTSRGYTEVMTPHLVKPEILVGTGQLPKFEEDLYKC---ERDQL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++FR  I    +LP         +R E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVTLTNLFREEILREEDLPIYLTAYTPCYRREAGAYGKDVRGIIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S     ++      +   L L    +   +G +G   +     E    +  
Sbjct: 287 VKI-VKPEDSYKELERLLEDAEEVLRLLQLPYRVVELCTGDLGFSSAKTYDIEVWFPSQG 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS 244
              +V    +  DF     N  + D   
Sbjct: 346 RYREVSSCSNCEDFQARRMNLRYRDANG 373


>gi|282901474|ref|ZP_06309399.1| tRNA synthetase, class II (G, H, P and S) [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193753|gb|EFA68725.1| tRNA synthetase, class II (G, H, P and S) [Cylindrospermopsis
           raciborskii CS-505]
          Length = 426

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   +  +    G IE+S P L + D    +G+   + +E  + A   +  + 
Sbjct: 175 GAALERALIQFMLSKHIENGYIEISPPLLVNTDSLTGTGQLPKFAQESFKCA---EDELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  +LP         FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILNKEDLPIYHTAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              ++PE S     K+  S   I   L L    +   +G +G   +     E  + +   
Sbjct: 292 KI-VSPESSFEELEKLVGSAESILQSLKLPYRVIELCTGDLGFGATKTYDLEVWLPSFNK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    + +DF     +  F +
Sbjct: 351 YREISSCSNCIDFQARRADIRFKE 374


>gi|90021342|ref|YP_527169.1| seryl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123396207|sp|Q21K22|SYS_SACD2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|89950942|gb|ABD80957.1| seryl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 426

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 86/241 (35%), Gaps = 19/241 (7%)

Query: 17  DAEIASHKLMLRT--GMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+  + +    G    L  G        +  ++     +     E
Sbjct: 133 DFEVQDHVDVGAAIGGLDFETATKITGARFSLMRGDIASMHRALTQLMLNTHIDEHKYEE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           + VP + + D    +G+   + +++ +L D  D+     PT E  +T+I R  I     L
Sbjct: 193 VYVPYIVNKDSLYGTGQLPKFEEDLFKLTD--DREFYLIPTAEVPVTNIARGEIFDESQL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     R   G++R  +F   +     + PE S ++  ++      I
Sbjct: 251 PVRFVAHTPCFRSEAGSYGRDTRGMIRQHQFEKVELVQL-VKPEDSLNALEELTQHAEAI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +LGL    +    G IG   +     E  + +     ++     F DF        + 
Sbjct: 310 LQKLGLPYRKVVLCGGDIGFSATKTYDLEVWIPSQGKYREISSCSCFGDFQARRMMARYR 369

Query: 241 D 241
           +
Sbjct: 370 N 370


>gi|300174045|ref|YP_003773211.1| seryl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299888424|emb|CBL92392.1| Seryl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 436

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 8/172 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R++     A  
Sbjct: 179 GARLERAVYNFMLDEHRKEGYTEMITPIVVNDAAMFGTGQYPKFQDDAYRVS---GLAQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYSGETLPAEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   P+ S      M  +   I  +LGL    +   +G +G   +  + + 
Sbjct: 296 KF-TKPDQSYAELESMTANAESILQKLGLPYHVIMLSTGDMGFSAAKTYDIE 346


>gi|261253432|ref|ZP_05946005.1| seryl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260936823|gb|EEX92812.1| seryl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 435

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGGGLDFASATKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYSE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +GK++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLEEKVNDEEPRKLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ISDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMDALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|168003459|ref|XP_001754430.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694532|gb|EDQ80880.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 464

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 75/268 (27%), Gaps = 11/268 (4%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
           Y     G      +         + G   +  P     ++  E  +   + +E+ ++   
Sbjct: 167 YFLKQYGVMLNQALINFGLAFLLKRGYTLLQTPFFMRQEVMAECAQLAQFDEELYKVTGE 226

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            D       T E+ +    R      + LP  +      FR E     R   G+ R  +F
Sbjct: 227 GD-DKYLIATAEQPLCSFHRGSWMDPKALPIKYAGYSTCFRKEAGSHGRDTLGIFRVHQF 285

Query: 156 LMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
              + +         S   + +M  +    + +LGL    +   SG +    +     E 
Sbjct: 286 EKVEQFCITSPNDNDSWEVHEEMLKNSEEFYQQLGLPYRVVSIVSGALNDSAAKKYDLEA 345

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A     ++    +  D+   +    +      + +        +  +          
Sbjct: 346 WFPASKTYRELVSCSNCTDYQSRNLEIRYGQKKMNDQVKNYCHLLNSTLTATERTLCCIL 405

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPM 298
                    R  EV   F   T++ LP 
Sbjct: 406 ENYQTPDGVRVPEVLQPFMLNTEF-LPF 432


>gi|300782829|ref|YP_003763120.1| histidyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299792343|gb|ADJ42718.1| histidyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 429

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 123/410 (30%), Gaps = 28/410 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           KG   +LP        V   + +   R G +    P L+SA+++      +   K++  L
Sbjct: 11  KGTRDFLPAEMSVRTQVFGHLYDVLERRGFLRYDGPILESAEIYERKSGQELADKQLYTL 70

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +     KS  + P  +Y      R E  P+ G  R RE  
Sbjct: 71  TDKGGRRLALRPEMTPSVARMIAGSAKS-LSFPVRWYSHPNCHRYEA-PQRG--RVREHW 126

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGGDLSH 208
             +A  F       +    ++    +            R+  +++   A +   G    H
Sbjct: 127 QINADIFGSDSANCEIEIFELVHDMMAALGATPDMFVLRVNDRNLLTSALTDVAGVSADH 186

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              V A     + +  +   +       +D        ++           ++V  E   
Sbjct: 187 LSQVFALVDRWEKYPREKLAESAGEIGLSDKQFEKLAETLDAGEALLDELPAEVRAESNL 246

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV---- 324
             +  +   S    E   +       S          + +      G Y   A       
Sbjct: 247 VRVLNSSAGSLVKYEPIIVRGLAYYTSTVFEVFDTSPENRRALFGGGRYSDLASMFTPQQ 306

Query: 325 VAAV--------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +  +        +    D  G+  P   +   + +I +    +   DA   +   L + G
Sbjct: 307 IPGIGFGMGDVTLIDFLDTHGLT-PAPRSEVDVMVIPVT---EDLADAARSVAGSLRQAG 362

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                     ++G +   AD  G    VIVG +  +   V ++   T  +
Sbjct: 363 LRTSTPIEHRKLGKELTRADKAGAVAVVIVGQEDWAAGNVTVRSLATREQ 412


>gi|291060038|gb|ADD72773.1| glycyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 474

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 149/478 (31%), Gaps = 80/478 (16%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G +   S+      G++ + P+G    +N+     ++  R     + +    L  
Sbjct: 19  LCKRRGFVFPSSEIYGGQGGVWDYGPMGIALKNNIAHAWWQDMTRLHDHIVGLDAAILMH 78

Query: 77  ADLWVESGRYDSYGK----------------------------------------EMLRL 96
            ++W  SG  D +                                           M   
Sbjct: 79  PNVWRTSGHVDHFSDPLVDCTVCKSRFRADQVAVPSAGGPCPQCGGALTGVRNFNLMFST 138

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMR 151
                D     +   P   + +   +++ +++ R  +PF   QI   FR+E+  +  + R
Sbjct: 139 HMGPTDERASLLYLRPETAQGIYVNYKNVLQTTRLKVPFGIAQIGKAFRNEIVTKNFIFR 198

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           + EF   +   F    E + H +          + + G++   MR  +       +HE  
Sbjct: 199 TCEFEQMEMQFFVRPAEDT-HWFEYWCAQRWAFYQKYGVRMNHMRWRT-----HAAHELA 252

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A      +  +       +   +   D  ++ ++        Y       +      +
Sbjct: 253 HYARAACD-IEYAFPMGFRELEGVHNRGDFDLTRHAQHSGKDLCYVDPDPNLDAAARRYV 311

Query: 272 PENKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           P     SA       +F       +Y    +  F  ++      Q G+   G MR+V   
Sbjct: 312 PCVVETSAGLTRCVLMFLCDAYTEEYVQAPNVAF--SETTQTADQEGAARTGEMRIV--- 366

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                    +    +++P  ++ + +   D +  D    +   L +      +D  G  I
Sbjct: 367 ---------LRLHPALSPTTVAFLPLVKKDGLV-DLARAVRDELRE-DFACDFDAAGA-I 414

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G ++   D +G P  V V  +   D  V ++ R +  +  +S   +  +      + R
Sbjct: 415 GKRYRRQDEVGTPFCVTVDYQSKEDDTVTVRLRDSMAQRRVSRAFLAEFLRTEIKHYR 472


>gi|289427082|ref|ZP_06428798.1| glycine--tRNA ligase [Propionibacterium acnes J165]
 gi|289159551|gb|EFD07739.1| glycine--tRNA ligase [Propionibacterium acnes J165]
          Length = 463

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 119/398 (29%), Gaps = 82/398 (20%)

Query: 67  IEMSVPTLQSADLWVESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E++ P   +       G++       M+       + D++    +   T + +  +   
Sbjct: 123 EEVNCPNCGNK------GQWTEPRDFNMMLKTYLGPVEDKSGLHYLRPETAQGIFVNFQN 176

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               + +  PF   Q    FR+E+ P   + R+REF   +   F                
Sbjct: 177 VLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEP------------- 223

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                  G D              Q +       +     N D 
Sbjct: 224 -----------------------GTDEEW----------HQYWIDVRTAWYTDLGINPDN 250

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVG-HIFYFGTKYSLP 297
                         +      +           E + ++ R   ++G H  + G   S  
Sbjct: 251 LRHYEHPKEKLSHYSKRTVDVEYKFGFSGSDWGELEGIANRTDFDLGNHSRHSGKDLS-- 308

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
               +  A+ K +   +     G  R + A +  ++                 +     +
Sbjct: 309 ---YYDQANNKRYLPYVIEPAAGLTRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRL 365

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +P K +++ +  +          + ARL +   +V +DD    IG ++   D +G P  +
Sbjct: 366 SPVKAAVLPLSRNSD-LSPKARDLAARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCI 422

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            V    + D  V I+ R T  ++ +S+++V  Y   + 
Sbjct: 423 TVDFDSLEDDAVTIRERDTMAQQRVSIDKVEEYLGGKL 460


>gi|238917275|ref|YP_002930792.1| glycyl-tRNA synthetase, class II [Eubacterium eligens ATCC 27750]
 gi|259511934|sp|C4Z1I4|SYG_EUBE2 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|238872635|gb|ACR72345.1| glycyl-tRNA synthetase, class II [Eubacterium eligens ATCC 27750]
          Length = 462

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 149/449 (33%), Gaps = 64/449 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFV----QESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK--FRDELR------P 145
           +   + +++           + + +              +  +    F DE         
Sbjct: 88  MDCKECHERFRADK------LIEDWADENSYDLGGSVDGWTQEQMKNFIDEKNICCPSCG 141

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAES 199
           +      R+F +    +F    E +K++      +   IF  +  K++       +    
Sbjct: 142 KHNFTDIRQFNLM-FKTFQGVTEDAKNTVYLRPETAQGIF--VNFKNVQRTSRKKVPFGI 198

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IG    +E      T  T+ F   +   F  P  + ++        I           
Sbjct: 199 GQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFTYWRQYCIDWLKALGIKED 258

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD----- 306
                +   + L    + +   IE    F +G        T Y L    T  G D     
Sbjct: 259 EMRARDHSPEELCFYSKGTTD-IEFLFPFGWGELWGIADRTDYDLTQHQTVSGEDMSYFD 317

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINI 354
               + +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +
Sbjct: 318 DEAKEKYIPYVIEPSLGADRVTLAFLCSAYDEEELEGGDVRTVLHFHPAIAPVKIGILPL 377

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +  EK+YA LSK   +  +DD G  IG ++   D +G P  +        D 
Sbjct: 378 SKK---LNEGAEKVYAELSKY-YNCEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSEEDG 432

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V ++ R T  +E + + ++  Y   +F 
Sbjct: 433 AVTVRDRDTMQQERIKIADLKAYFEDKFR 461


>gi|227874495|ref|ZP_03992668.1| glycine--tRNA ligase [Oribacterium sinus F0268]
 gi|227839661|gb|EEJ50118.1| glycine--tRNA ligase [Oribacterium sinus F0268]
          Length = 428

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 118/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++    S + LPF   QI   FR+E+ P  
Sbjct: 120 MFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRSSRKKLPFGIAQIGKSFRNEITPGN 179

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F       +      +  Y + + +  L ++ M+ E   +     
Sbjct: 180 FTFRTREFEQMELEFFCKPDTDLE------WFHYWKDYCQKWLLNLGMKPE---MLRARD 230

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE   L+               F   +              +             H E  
Sbjct: 231 HEAAELS---------------FYSKATTDLEFLFPFGWGELWGIADRTNYDLSRHEEVS 275

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +                              F     + +   +    +GA RV  A
Sbjct: 276 GQDMKY----------------------------FDDEINEHYLPYVVEPSLGADRVTLA 307

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D + +          +  ++AP KI ++ +        +  EKI+  LSK    
Sbjct: 308 FLCAAYDVEELEGGDERTVLRFHPALAPIKIGVLPLAKK---LGEGAEKIHEELSKYWM- 363

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  V    +   D  V ++ R +  +  + + E+  Y 
Sbjct: 364 CEYDDRGN-IGKRYRRQDEIGTPYCVTYDFQSEEDHAVTVRERDSMEQVRIPISELQAYF 422

Query: 439 SHRFS 443
           + + +
Sbjct: 423 AEKLA 427


>gi|254430508|ref|ZP_05044211.1| seryl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197624961|gb|EDY37520.1| seryl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 425

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 12/211 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G +    + + + +     G  E+  P L ++     SG+   + +E  R + 
Sbjct: 166 FVTLLGQGARLERALISFMLDRHGSRGYTEVMPPILVNSASLTASGQLPKFAEESFRCS- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T + R  +     LP  +      FR E     R   G++R  +
Sbjct: 225 --GDDLWLTPTAEVPLTSLHRDEVIPAEQLPLKYCAYTPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F   P+ S  ++ ++      I   L L    +   +G +G   +     E 
Sbjct: 283 FNKVELYWF-TRPDHSAEAHEQITSDAEAILEALELPYRRIELCTGDLGFSAARTFDLEV 341

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +       ++       DF     +  F D
Sbjct: 342 WLPGAGAYREISSCSVCGDFQARRASIRFKD 372


>gi|330957528|gb|EGH57788.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 429

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 147/437 (33%), Gaps = 48/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP       +    +    +  G  ++ +P ++  DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRN  ++   P            H  +        + I   FR E RP+ G  R
Sbjct: 66  EMYTFADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHE-RPQKG--R 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-------- 203
            R+F       F+L           M     R++  LG++   ++ E   +G        
Sbjct: 123 YRQFHQIGVEVFNLDGPDIDAELIVM---TWRLWGLLGIRD-AVKLELNSLGTSEARGRY 178

Query: 204 GDLSHEF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            D   EF    L    E      K      + +++ +   ++     +  +    +    
Sbjct: 179 RDALVEFLSAHLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVNAPKLADYLDDESRVHF 238

Query: 262 VHNEKLFDSLPEN---KRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKD 309
              +   D+            RG++     +F       G + ++     + G       
Sbjct: 239 EGLKARLDAAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGG 298

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQVC-RDACEK 367
                  + +G  R+V  ++E+         P+ +A    + L       ++      EK
Sbjct: 299 KPTAGVGFAMGIERLVL-LLETLEQ-----VPEEIARQVDVYLCAFGDAAELAGLTLAEK 352

Query: 368 IYARLSKVGCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
           +  +L  +   V         G  +  F  AD  G    +I+G + ++   + +K  R  
Sbjct: 353 VRDQLPNLRLQV-----NAGAGSFKSQFKKADKSGALYALILGEEELAAKVIGVKPLRGQ 407

Query: 424 GIREDMSLEEVINYASH 440
           G +++++ + ++ + + 
Sbjct: 408 GEQQNIAWDALLEHLAS 424


>gi|238921038|ref|YP_002934553.1| histidyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259511947|sp|C5BET0|SYH_EDWI9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|238870607|gb|ACR70318.1| histidyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 424

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 136/428 (31%), Gaps = 29/428 (6%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + A +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTALWQPIEAALKQVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M   + ++   LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLAGPDIDAEIIMMTARWWKV---LGIAD-HVTLELNSIGSLEARAAY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK---LF 268
             A     + +  +   D      +     + S N  V+         S+  +      F
Sbjct: 178 RDALVAYLEQYKDQLDEDCLRRMYSNPLRVLDSKNPQVQALLNAAPRLSEYLDADSRAHF 237

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAMRV 324
           D L      +     V      G  Y          T  GA G       G Y     ++
Sbjct: 238 DGLCRLLDDAGIVYTVNERLVRGLDYYNRTVFEWVTTSLGAQGT--VCAGGRYDGLVAQL 295

Query: 325 VAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
                 +     G+            +  P +   + + A  +  + A  ++  +L    
Sbjct: 296 GGHATSAVGFAMGLERLVLLVQAVNPAFLPQRAVDVYLIAAGEGTQSAAMRLAEQLRDAL 355

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               +  +  G     QFA AD  G  + +++G   V   +V +K   +G ++ ++ ++ 
Sbjct: 356 PTLRLMTNYGGGNFKKQFARADKWGARIALVLGESEVQSGQVNVKCLASGEQQTVAQDQA 415

Query: 435 INYASHRF 442
               +   
Sbjct: 416 ATLLATLL 423


>gi|150390772|ref|YP_001320821.1| glycyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|254781872|sp|A6TSJ4|SYG_ALKMQ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|149950634|gb|ABR49162.1| glycyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 462

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 119/357 (33%), Gaps = 55/357 (15%)

Query: 93  MLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +       D + +  +   T + +  +       + + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTHQGVNEDTSTEIFLRPETAQGIFVNFKNVQRTARKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F    +  +      +  Y   F +  L  + M+        + S
Sbjct: 214 YTFRTREFEQMELEFFCKPGDDLE------WFDYWSNFCKKWLLDLSMK--------ETS 259

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEK 266
                  +   +    +   ++F  P    +   I    +  ++Q T          +  
Sbjct: 260 IRLRAHTEEELSHYSNATTDIEFKFPFGWGELWGIADRTDFDLKQHTEHSGVQLIYQDPV 319

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             +         + G +   + +    Y           D                R+V 
Sbjct: 320 TNEKYVPYCIEPSLGADRVTLAFLVDAYEEE---QIDEKD---------------SRIV- 360

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                      +    ++APFK +++ +       ++   +++ +LS     + +DD G 
Sbjct: 361 -----------LKLHPALAPFKAAVLPLTKK---LKEQSLELFEKLSDK-FMIDYDDAG- 404

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  +      + D+ V ++ R T  ++ ++++E+  +   +  
Sbjct: 405 SIGKRYRRHDEIGTPYCITYDFDTLEDNCVTVRDRDTMEQQRVAIDELEVFLEEKIK 461


>gi|32033510|ref|ZP_00133837.1| COG0172: Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208344|ref|YP_001053569.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|166200593|sp|A3N0M8|SYS_ACTP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|126097136|gb|ABN73964.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 435

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    +LP  +      FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDENSLPLRYTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|328958771|ref|YP_004376157.1| serine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328675095|gb|AEB31141.1| serine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 427

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 13/201 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + +      G  EM  P L ++D    +G++  + +++ ++ 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDLHTGEHGYTEMMTPYLVNSDSMFGTGQFPKFKEDVFQI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 +   PT E  +T+ +R+ I     LP  F  +   FR E     R   G++R  
Sbjct: 222 --EGTDLTLIPTAEVPLTNYYRNEILKEEQLPVYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F   PE S     KM  +   +  +L L    +   +G +G   +     E
Sbjct: 280 QFNKVEMVKFS-KPETSYDELEKMTNNAEAVLQKLNLPYRVLALCTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDF 230
             + A     ++    +   F
Sbjct: 339 VWIPAQETYREISSCSNTEAF 359


>gi|296269165|ref|YP_003651797.1| glycyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296091952|gb|ADG87904.1| glycyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 461

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 69/467 (14%), Positives = 154/467 (32%), Gaps = 70/467 (14%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQS 76
           L  R G ++  S      +  + + PLG +  +N+     +   +     + +    + +
Sbjct: 14  LAKRRGFVYPSSEIYGGLRASWDYGPLGVELKNNIKREWWKAMVQGREDVVGVDSCVILA 73

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ++W  SG  D++      L +       Y   H   + + + +   +            
Sbjct: 74  REVWQASGHVDTFTD---PLTECLSCHKRYRADH---LIEAYAAKHGAEPAGGLNDVSCP 127

Query: 137 LKFRDELRPRFG-VMRSREF--LMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLG 189
                      G     R+F  L+K          G       +   +F+++L +     
Sbjct: 128 NC------GNKGAFTPPRQFSGLLKTFLGPVEDESGLAYLRPETAQGIFINFLNVQQS-- 179

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +    G IG    +E         T+ F   +   F  P  + ++        + 
Sbjct: 180 -ARKKIPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGTDEEWHQYWIDERLR 238

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSL 296
                     +    E   +   +    S R +++ + F F              T + L
Sbjct: 239 WYIDLGINKDNLRLYEHPKE---KLSHYSKRTVDIEYRFNFPGMEWGELEGIANRTDFDL 295

Query: 297 PMSATFKGAD--------GKDHYVQMGSYGIGAMRVV------AAVIESSHDGKG----- 337
              +   G D        G+ +   +     G  R        A  ++ + + KG     
Sbjct: 296 SSHSKASGQDLSYFDQETGQRYIPYVIEPAAGVDRTALTFLLDAYTVDEAPNAKGEMEQR 355

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +     +AP K++++ + + +         + A+L +   +V +DD G  IG ++   
Sbjct: 356 TVLRLDPRLAPVKVAVLPL-SRNADLSPKARDLAAQLRR-RWNVEFDDAGA-IGRRYRRQ 412

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +G P  V +  + + D+ V ++ R +  +E +S+++V  Y   R 
Sbjct: 413 DEIGTPYAVTIDFQTLEDNAVTVRERDSMAQERISIDQVEAYLRERL 459


>gi|295132359|ref|YP_003583035.1| glycyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294980374|gb|ADF50839.1| glycyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 513

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 106/344 (30%), Gaps = 66/344 (19%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F    E
Sbjct: 219 TAQGIFVNFANVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRQREFEQMEMQFFVRPGE 278

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K   +  +    LGL                           E   F   + +
Sbjct: 279 EL-SWFEKWKETRQKWHASLGLGD-------------------------EKYRFHDHEKL 312

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                +      D       +E   +        H E                       
Sbjct: 313 AHYANAATDIEFDFPFGFKELEGIHSRTDFDLKAHEEHSGKK------------------ 354

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI------ESSHDGKG---II 339
               ++  P         G+++   +    IG  R+  AV       E   DGK    + 
Sbjct: 355 ---LRFYDP-------EMGENYVPYVIETSIGLDRMFLAVFSASLQEEDLGDGKSRTVLK 404

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P  +AP K +++ +   D    +  ++I   L K    V +D+    +G ++   D  G
Sbjct: 405 LPAVLAPTKAAILPLVKKD-GLPELAQEIVEEL-KWDFRVQYDEKDA-VGRRYRRQDAAG 461

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            PL + V    + D  V +++R T  ++ + + E+ +      +
Sbjct: 462 TPLCITVDHDSLEDKTVTVRYRDTMEQKRVPISELASIIDQEVN 505


>gi|313897403|ref|ZP_07830946.1| histidine--tRNA ligase [Clostridium sp. HGF2]
 gi|312957773|gb|EFR39398.1| histidine--tRNA ligase [Clostridium sp. HGF2]
          Length = 445

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 139/444 (31%), Gaps = 53/444 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSY 89
           M +Q  +G    LP        +  +IR+        E+  P  +  +++       D  
Sbjct: 1   MSYQVPRGTQDILPNEISKWHRLEELIRQFTYVYNYQEIRTPIFEHTNVFKRGNDSSDMV 60

Query: 90  GKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
            KEM      N    +   P     +   F  H    Y +LP   Y +  + R E RP+ 
Sbjct: 61  NKEMYTFQLENSSTSLTLRPEGTAGVARAFVEHKMYGYADLPMKMYYVGPQCRHE-RPQK 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R F                     +  S++     LGLK + +   +  +G D S
Sbjct: 120 G--RMRIFNQFGVEVIGAKSPLLDVETIALGWSFI---SALGLKDMKVLINT--LGDDAS 172

Query: 208 HEFIVLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                 A              D       +     D  I  +  + +     A   +  +
Sbjct: 173 RAAYREALKEHFKNDIDHMCTDCKRRYEQNPLRILDCKIDHDLDIMKQVPKMADYLNEES 232

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSAT------------ 301
           +  F+ + E         EV      G  Y           +  M A             
Sbjct: 233 KAYFEQVLEGLDALGIPYEVDDKLVRGLDYYTHTVFEVVSVNKEMGAQSTVFAGGRYDGL 292

Query: 302 ---FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              F G +G    +    + +G  R++ A+     +G  ++  DS+    + ++ +    
Sbjct: 293 VEYFGGPEG----MSGIGWAMGLERLLIAL---EAEGISLVDEDSL---DVYVLCLSPK- 341

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++  +L   G     D +   + +QF   D +   + +++G + +      +
Sbjct: 342 --ASTTVLQVVTQLRAAGYRTDTDYLNRSMKAQFKTVDRMHAKVAIMIGEQDLESGSAAV 399

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           K+  T  + +++ + ++      F
Sbjct: 400 KNIETKEKTEVAFDSIVEAIDAMF 423


>gi|290985788|ref|XP_002675607.1| Glycyl-tRNA synthetase [Naegleria gruberi]
 gi|284089204|gb|EFC42863.1| Glycyl-tRNA synthetase [Naegleria gruberi]
          Length = 650

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSH----------DGKGII-----WPDSVAPFKISL 351
           G+++   +     G  R++  ++E S+          +   I       P ++AP+K++L
Sbjct: 473 GRNYTPGVIEPSFGIGRIIYCLLEHSYWVRPKQEHEKEEDKIQRAVLSLPPAIAPYKVAL 532

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + IKA         +K+   L++ G     D   + IG ++A AD +G P  + +    V
Sbjct: 533 LPIKAD---QDQIVKKLQQSLARYGISHRVDAGNQNIGKKYARADDIGIPFAITIDDNSV 589

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   V I+ R +  +  + + ++I   +      +
Sbjct: 590 TAGTVTIRERDSCEQVIVPISDLITVLNDLIDRIK 624



 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           + +PF   QI   FR+E+ PR G++R REF + +   F
Sbjct: 221 KQMPFASAQIGQAFRNEISPRSGLLRVREFTLAEIEHF 258


>gi|282898294|ref|ZP_06306285.1| tRNA synthetase, class II (G, H, P and S) [Raphidiopsis brookii D9]
 gi|281196825|gb|EFA71730.1| tRNA synthetase, class II (G, H, P and S) [Raphidiopsis brookii D9]
          Length = 426

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 77/204 (37%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   +  +    G IE+S P L + D    +G+   + +E  + A   +  + 
Sbjct: 175 GAALERALIQFMLSKHIDNGYIEISPPLLVNTDSLTGTGQLPKFAQESFKCA---EDELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  +LP         FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILNKEDLPIYHTAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              +TPE S     K+  S   I   L L    +   +G +G   +     E  + +   
Sbjct: 292 KI-VTPESSFEELEKLVGSAESILQSLKLPYRVIELCTGDLGFGATKTYDLEVWLPSLDK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    + +DF     +  F +
Sbjct: 351 YREISSCSNCIDFQARRADIRFKE 374


>gi|262305781|gb|ACY45483.1| glu- + pro-tRNA synthetase [Pedetontus saltator]
          Length = 134

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+ G   + G  +S      ++  +  +   V   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGGTSHHLGQNFSKMFDIVYEDPETHEKKLVYQNSWGLT-TRTIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P +VA  ++ ++         D       ++C+ + + L   G  V  D       
Sbjct: 74  GLVLPPNVACIQVVIVPCGITATMKDAERDSLLNSCKDLESELXAGGVRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|257084827|ref|ZP_05579188.1| histidyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256992857|gb|EEU80159.1| histidyl-tRNA synthetase [Enterococcus faecalis Fly1]
          Length = 433

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 140/435 (32%), Gaps = 51/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +E     D +  
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYL-N 230

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVG-HIFYFGTKYSLPMSATF 302
                 + A       +      DS         +    E+       G + ++     +
Sbjct: 231 EPSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRY 290

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G     G       G +G+G  RV   ++    +   I    +++     ++ I +   
Sbjct: 291 NGLVEELGGPDTPGFG-FGMGIERV---LLTMEAEEVVI---PALSELDAYVVGIGSETN 343

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V   A  ++   +   G     D M  +  +QF  AD L   L + +G   +++  V +K
Sbjct: 344 V---AALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVK 400

Query: 420 HRLTGIREDMSLEEV 434
              T   +   L  +
Sbjct: 401 SMATREEKAFPLSAI 415


>gi|162447800|ref|YP_001620932.1| glycyl-tRNA synthetase, class II [Acholeplasma laidlawii PG-8A]
 gi|161985907|gb|ABX81556.1| glycyl-tRNA synthetase, class II [Acholeplasma laidlawii PG-8A]
          Length = 456

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 122/354 (34%), Gaps = 54/354 (15%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P   + +   F++  ++ R  +PF   QI   FR+E+ P  
Sbjct: 147 MFKTFQGVVEETANEVYLRPETAQGIFINFKNIQRAQRLKVPFGVAQIGKSFRNEITPGN 206

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      ++      L+    LG+K   +RAE         
Sbjct: 207 FTFRTREFEQMELEFF-CKPGTEIQWFDYWLDRMLKFLTSLGVKEESLRAEP-------- 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                 A    +    +   ++F  P    +   I S  +   +     +     + +  
Sbjct: 258 -----HAKEALSHYSNATTDIEFKYPWGFDELWGIASRTNFDLKSHQDLSKEDMSYLDPE 312

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +                                 + + G +  + +          +  
Sbjct: 313 TNERYIP-------------------------YVVEPSVGVERLLLVFLLNGLEEETL-- 345

Query: 328 VIESSHDGKG-IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
               + D +  +     +AP+K +++ +   +   +    +I+  LS+   DV +D+  +
Sbjct: 346 ---ENGDVRQVLKLHPKLAPYKAAILPLVRKEHSQK--AREIHEMLSE-NLDVVYDET-Q 398

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            IG ++   D +G P  + V  + + D  V I+HR +  +  ++++++  +   
Sbjct: 399 NIGKRYRRQDAIGTPFCITVDHQTMDDDTVTIRHRDSMEQSRIAIKDIEQFIQQ 452


>gi|157374572|ref|YP_001473172.1| histidine--tRNA ligase [Shewanella sediminis HAW-EB3]
 gi|189082312|sp|A8FT71|SYH_SHESH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157316946|gb|ABV36044.1| Histidine--tRNA ligase [Shewanella sediminis HAW-EB3]
          Length = 424

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 151/438 (34%), Gaps = 48/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +  ++RE  +  G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKLETVLRETVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       + +           + +   R++ +LG+    +  E   +G        
Sbjct: 122 YRQFNQFGVEVYGIGSADVDAE---VLMLSHRLWEKLGITE-HVTLELNTLGDPAERAAY 177

Query: 212 VLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     + F  +   +            + ++N D   +++    + ++         
Sbjct: 178 RDALIAYLEQFKEQLDEESQRRMYTNPLRVLDTKNPDVQALLTDAPELMEYLGEETRAHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
            H  +L D++           RG++     +F       G + ++     + G      G
Sbjct: 238 SHLCELLDAVGIKYVINPRLVRGLDYYNRTVFEWVTSSLGAQGTVLAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+       + +G  R+V  ++E+    K I       P  + +      D    +A  K
Sbjct: 298 KNTPAV--GFAMGLERIVL-MLETLELTKDI-------PATVDVYVTAMGDASKIEAI-K 346

Query: 368 IYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG 424
           I   L        V     G     Q   AD  G  + +++G   +++++V +K+ R   
Sbjct: 347 IAQSLRSELPHLRVMSHCGGGNFKKQMKRADKSGAQVALVIGEDELANNQVAVKYLREKK 406

Query: 425 IREDMSLEEVINYASHRF 442
            +E ++ + +  Y +   
Sbjct: 407 EQELVARDALATYIAELI 424


>gi|50555007|ref|XP_504912.1| YALI0F02629p [Yarrowia lipolytica]
 gi|49650782|emb|CAG77717.1| YALI0F02629p [Yarrowia lipolytica]
          Length = 453

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 6/180 (3%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
           Y     G      +     +   + G + +  P + + D+   + +   + +E+ ++ D 
Sbjct: 170 YFLKSYGVFLNQALINYGLDFLTKRGYVPLQAPMMMNKDVMARTAQLSQFDEELYKVMDG 229

Query: 100 NDKAMIYGPTHEEVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            D+  +   + + +          +    LP  +      FR E     +  +G+ R  +
Sbjct: 230 QDEKYLIATSEQPISAYHANEWFERPEEQLPRRYAGYSTCFRREAGSHGKDAWGIFRVHQ 289

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +       PE S   +++M  +    +  LGL    +   SG +    + ++ + A
Sbjct: 290 FEKIE-QFCITDPEKSWEEFDRMIDASEEFYKSLGLPYRVVSIVSGELNNAAAKKYDLEA 348


>gi|256762900|ref|ZP_05503480.1| histidyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256964756|ref|ZP_05568927.1| histidyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257082209|ref|ZP_05576570.1| histidyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257087176|ref|ZP_05581537.1| histidyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|307272837|ref|ZP_07554084.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307287884|ref|ZP_07567917.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|312900882|ref|ZP_07760176.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|256684151|gb|EEU23846.1| histidyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256955252|gb|EEU71884.1| histidyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256990239|gb|EEU77541.1| histidyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256995206|gb|EEU82508.1| histidyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|306501029|gb|EFM70336.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306510451|gb|EFM79474.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|311291981|gb|EFQ70537.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315025976|gb|EFT37908.1| histidyl-tRNA synthetase [Enterococcus faecalis TX2137]
 gi|315033288|gb|EFT45220.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315143401|gb|EFT87417.1| histidyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315163664|gb|EFU07681.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315167504|gb|EFU11521.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315169380|gb|EFU13397.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315174312|gb|EFU18329.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1346]
 gi|327535486|gb|AEA94320.1| histidine--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 433

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 140/435 (32%), Gaps = 51/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +E     D +  
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYL-N 230

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVG-HIFYFGTKYSLPMSATF 302
                 + A       +      DS         +    E+       G + ++     +
Sbjct: 231 EPSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRY 290

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G     G       G +G+G  RV   ++    +   I    +++     ++ I +   
Sbjct: 291 NGLVEELGGPDTPGFG-FGMGIERV---LLTMEAEEVVI---PALSELDAYVVGIGSETN 343

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V   A  ++   +   G     D M  +  +QF  AD L   L + +G   +++  V +K
Sbjct: 344 V---AALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVK 400

Query: 420 HRLTGIREDMSLEEV 434
              T   +   L  +
Sbjct: 401 SMATREEKAFPLSAI 415


>gi|310639562|ref|YP_003944320.1| seryl tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309244512|gb|ADO54079.1| Seryl tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 427

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 87/267 (32%), Gaps = 22/267 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +  +   G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYKGLGARLERALINFMMDLHSSEHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKL--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            D      PT E  +T+  R  I +   LP  +      FR E     R   G++R  +F
Sbjct: 222 RDTEYYLIPTAEVPVTNYHREEIMNADQLPKYYVAYSSCFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +     + P+ S     KM  +  R+   LGL    +   +G +G   +     E  
Sbjct: 282 NKVEMLKL-VHPDTSYEELEKMTNNAERVLQLLGLPYRVLALCTGDMGFTSAKTYDLEVW 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW---------TAPYAATSDV 262
           +       ++    +  DF     N  F                          A   + 
Sbjct: 341 LPESGMYREISSCSNTEDFQARRANIRFRPDAKAKPEFVHTLNGSGLAVGRTVAAILENY 400

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFY 289
             E     +PE  R   RGIEV     
Sbjct: 401 QQEDGSIVIPEVLRSYMRGIEVITPKQ 427


>gi|217970182|ref|YP_002355416.1| seryl-tRNA synthetase [Thauera sp. MZ1T]
 gi|217507509|gb|ACK54520.1| seryl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 430

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 80/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQ-NRTGAIEM 69
           D E+  H  L    G+  +      G       G   +    +   + +      G  E 
Sbjct: 133 DFEVRDHVDLGAPLGLDFETGAKLSGSRFAFLRGPVARLHRALAQFMLDTHTREHGYTEC 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + +      +G+   + +++  +    D         PT E  +T+  R  + +  
Sbjct: 193 YTPYIVNGSALYGTGQLPKFKEDLFWVLRGGDEEGLEQYLIPTAEITLTNSVREEVLALE 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     R   G++R  +F   +     + P  SK +  +M     
Sbjct: 253 SLPIRLTAHSPCFRSEAGSGGRDVRGMIRQHQFDKVEMVQI-VEPAKSKEALEQMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 AILQKLELPYRVITLCTGDMGFSAAKTYDLEVWLPAQNTYREISSCSNCESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           F +    N +V 
Sbjct: 372 FKNAQGKNELVH 383


>gi|29376493|ref|NP_815647.1| histidyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227519313|ref|ZP_03949362.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227555480|ref|ZP_03985527.1| histidyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257416407|ref|ZP_05593401.1| histidyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|39932157|sp|Q833I1|SYH_ENTFA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|29343957|gb|AAO81717.1| histidyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227073242|gb|EEI11205.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227175390|gb|EEI56362.1| histidyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257158235|gb|EEU88195.1| histidyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|315147634|gb|EFT91650.1| histidyl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315574558|gb|EFU86749.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315581800|gb|EFU93991.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 433

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 140/435 (32%), Gaps = 51/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +E     D +  
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYL-N 230

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVG-HIFYFGTKYSLPMSATF 302
                 + A       +      DS         +    E+       G + ++     +
Sbjct: 231 EPSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRY 290

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G     G       G +G+G  RV   ++    +   I    +++     ++ I +   
Sbjct: 291 NGLVEELGGPDTPGFG-FGMGIERV---LLTMEAEEVVI---PALSELDAYVVGIGSDTN 343

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V   A  ++   +   G     D M  +  +QF  AD L   L + +G   +++  V +K
Sbjct: 344 V---AALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVK 400

Query: 420 HRLTGIREDMSLEEV 434
              T   +   L  +
Sbjct: 401 SMATREEKAFPLSAI 415


>gi|329962119|ref|ZP_08300130.1| serine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328530767|gb|EGF57625.1| serine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 424

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 119/349 (34%), Gaps = 75/349 (21%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPVKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S              F S    DF + SE    
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMS--------------FTSALCFDFEVYSEAQKR 349

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                                     +EV  +  F T  +  + 
Sbjct: 350 W-----------------------------------------LEVSSVSNFDTYQANRLK 368

Query: 300 ATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
             ++ A+ K      +    +   R+VAA++E++   +GI  P ++ P+
Sbjct: 369 CRYRTAEKKTELCHTLNGSALALPRIVAALLENNQTPEGIRIPKALVPY 417


>gi|217316861|gb|ACK37836.1| putative glutamyl-prolyl tRNA synthetase [Eumunida funambulus]
          Length = 134

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  +  +  +    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVFEDPETNQKKFCYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVC-----RDACEKIYARLSKVGCDVFWDDMG 385
           G++ P   A  +I ++   I A           + C+K+   L   G  V  D   
Sbjct: 74  GLVLPPRAASVQIIIMPVGITAKSSEQDKNNLLEECKKLEKDLISHGIRVRCDTRD 129


>gi|157961134|ref|YP_001501168.1| histidyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189082311|sp|A8H246|SYH_SHEPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157846134|gb|ABV86633.1| histidyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 424

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 65/434 (14%), Positives = 151/434 (34%), Gaps = 40/434 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +  ++R+     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKLETVLRDTVGSYGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAES------GPIGG 204
            R+F       + +           + +   +++ +LG+   + +   +           
Sbjct: 122 YRQFHQFGVEVYGIPTADIDAE---VLMLSAKLWEKLGITEHVTLELNTLGDTEERAAYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D    F+        +    + + +    + S+N D   +++   ++  +      +   
Sbjct: 179 DALIAFLEQHKEVLDEDSQRRMYSNPLRVLDSKNADVQALLADAPVLMDYFGEDTRSHFS 238

Query: 263 HNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKGADGKD--H 310
           H  +L +++           RG++     +F       G++ ++     + G  G+    
Sbjct: 239 HLCELLEAVGIQYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVGQLGGK 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIY 369
                 + +G  R+V  ++  + +    I P       + +  +  +         +++ 
Sbjct: 299 PTPAVGFAMGLERIV--LLLQTLELDKDIGP----AVDVYVTAMGDNCKVEAIKIAQELR 352

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIRED 428
           A L              +   Q   AD  G  + +++G   +++++V +KH R    +E 
Sbjct: 353 ASLPTAKVMSHCGGGNFK--KQMKRADKSGACVALVIGEDELANNQVAVKHLREDKAQEL 410

Query: 429 MSLEEVINYASHRF 442
           ++ + +  Y +   
Sbjct: 411 VARDALATYIAELI 424


>gi|94548835|gb|ABF38881.1| Histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 438

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 16  QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 75

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 76  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 131

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 132 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 186

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 187 AAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 246

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 247 AHFEA-------VQDMLEALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 299

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       I L  +    
Sbjct: 300 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDIYLAVLGDG- 351

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 352 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 409

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 410 KNNRSRQEVEVSFED 424


>gi|290559795|gb|EFD93119.1| tRNA synthetase class II (G H P and S) [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 492

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 82/475 (17%), Positives = 148/475 (31%), Gaps = 97/475 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG------------ 84
            G + + P+G +  +N+    R+  N    +E+S   +    +   SG            
Sbjct: 37  SGFWEYGPVGFRIFNNLLTQWRKLVNSMNGVEISGSVVLPKKVLQASGHEDNFFDMEIAC 96

Query: 85  -------RYDSYGKE-----------------------------------------MLRL 96
                  R D   +E                                         M  L
Sbjct: 97  VKCGSVYRVDKLLEEKENSRSFEGLSEGEYLNYIKEYGIKCAKCGGELGEIKKFGTMFPL 156

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
               D      P   + +   F+     S R  P    Q+   FR+E+ PR  ++R REF
Sbjct: 157 KIGEDVQGYLRPEACQSIFLDFKRVFDTSGRKFPLVIAQVGKAFRNEISPRNNLIRQREF 216

Query: 156 LMKDAYSFDLTPE-GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
              D   F +      K  Y       ++I+ +    ++ +         D + +  V  
Sbjct: 217 YQNDIEIFFVEDNFELKEDYT------VQIYDKEKNNTMNVNIS--AALSDGTIKNKV-- 266

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T    SK +        + D      L        A YA  S     K  DS  E 
Sbjct: 267 ----TAYALSKIYGFLLSIGFDKDVIRFRKLYE----DKAFYAEESFDLEIKKGDSWVEL 318

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-H 333
              + RGI            S       KG +   +  ++    +G  R+   ++  S  
Sbjct: 319 VACNHRGIH---------DLSSYEKYGAKGMNIDSNIPKVFELSMGTDRLFYLLLLVSMK 369

Query: 334 DGKGIIWP---DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 W      ++PFK ++  + + D        +I+   S    D+ + D G  IG 
Sbjct: 370 KDSERRWLSLDSKISPFKYAIFPLVSKD-GVDSKASEIFEN-SVYRDDILYSDSG-SIGK 426

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++  A+ +G  L   V  + + +  V I+   +  +  +S+   I+  +  F +N
Sbjct: 427 RYRKAEEIGVRLAFTVDYESLENETVTIRESDSMKQFRISI-NYIDIITKEFESN 480


>gi|189424820|ref|YP_001951997.1| histidyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|259511949|sp|B3EB83|SYH_GEOLS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189421079|gb|ACD95477.1| histidyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 419

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 127/418 (30%), Gaps = 41/418 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP        +    R+   R G  E+ VP ++  +L+  S     D   KEM 
Sbjct: 7   KGFNDLLPAESGLWQFIEQTARQVFARYGFNEIRVPIVEKTELFCRSIGDTTDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+   ++   P     +      H     +     Y +   FR E RP+ G  R R+
Sbjct: 67  TFMDKGGSSLTLRPEGTASVMRALIEHKLYALDSINKLYYMGPMFRHE-RPQKG--RYRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVL 213
           F    A                M     R+F   GL    ++  S G      ++   ++
Sbjct: 124 FHQIGAEVTGAADPLIDAQVLLMV---SRLFQEFGLTEPRLQINSLGCPACRPAYRQALV 180

Query: 214 ADTGETQVFCSKDFM-----------DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           A   E Q    +D             D  +P          ++   +      + +    
Sbjct: 181 AFLAERQEALCEDCRRRQGTNPLRALDCKVPGCIEATQGAPAMVEHLCNECDQHFSMVQN 240

Query: 263 HNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG-ADGKDHYVQM 314
           +          N R+  RG++              G + ++     + G  +        
Sbjct: 241 YLTAAEVPFSLNPRM-VRGLDYYTRTTFELVTGLLGAQSAVAAGGRYDGLVEQLGGPAVP 299

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G      +  VA ++      K            + +  +       R A  ++ A L  
Sbjct: 300 GIGFALGVERVALLLGDRSFEKTP---------DLFIAVMG---DAARTAGFRLMAALQD 347

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G  V  D  G+ + SQ   AD L     +++G   +      +K    G ++ + LE
Sbjct: 348 QGFWVETDCEGKSLKSQMRRADKLKSRYSIVLGDTELVAGSGTLKRMADGNQQPVHLE 405


>gi|292669403|ref|ZP_06602829.1| histidine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292648964|gb|EFF66936.1| histidine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 421

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 129/437 (29%), Gaps = 41/437 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP    A   V  +IR+   R G  E+  P  +  +L+        D 
Sbjct: 1   MLTNAPRGTKDILPDAVGAWTYVENVIRDLCARYGYHEIRTPIFEHTELFQRGIGDGTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRF 147
             KEM    DR D+++   P +       +    K Y +      + I   FR + RP+ 
Sbjct: 61  VDKEMYTFTDRGDRSLTLRPENTASAVRAY-LQNKLYADGGLQKLFYIGSMFRYD-RPQA 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GP 201
           G  R REF      +       +        +    +   LGL  + ++  S       P
Sbjct: 119 G--RMREFHQFGVEAIGEAGPAADAET---ILLAFDVLTALGLTGLTLKLNSVGCPNCRP 173

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +  +   E+         +             + +         ++         A T  
Sbjct: 174 VYRERLQEYF-------KEYLHELCDDCQERYTRSPLRILDCKKDAERSFMAGAPAITDC 226

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSY 317
           +  E           +++ GI          G  Y         +     +      G Y
Sbjct: 227 LCAECADHFGQVKDYLTSAGISYTLDPRLVRGLDYYTRTAFEIAYPPLGAQSAVAGGGRY 286

Query: 318 GIGAMRV---------VAAVIES--SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                 +          AA +E       +  + P+   P    +  I   D   R A  
Sbjct: 287 DGLVEELGGTPTPAVGFAAGLERVLLALEQQNLVPE--QPPAADVFLITLGDAASR-AAF 343

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L   G     D  G  + +Q   A+  G    VI+G   ++     ++  +   +
Sbjct: 344 PLLHELRCGGVRALMDYGGRSMKAQMKQANKSGARYAVILGEDELTQHAALVRDMMESTQ 403

Query: 427 EDMSLEEVINYASHRFS 443
           E  SL++++        
Sbjct: 404 ESYSLDDIVRRLISEVK 420


>gi|237809053|ref|YP_002893493.1| seryl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259516216|sp|C4L937|SYS_TOLAT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|237501314|gb|ACQ93907.1| seryl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 432

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 19/212 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +    + G  E  VP L +AD  + +G+   + +++
Sbjct: 158 SGSRFVVLKGQIARMHRALAQFMLDLHTQQHGYTECYVPYLVNADSLLGTGQLPKFAEDL 217

Query: 94  LRLA-----DRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
              A     D     +     PT E  +T+I R  I   + LP         FR E    
Sbjct: 218 FHTAINGEGDEEGKVRKFSLIPTAEVPLTNIARDEIYDEKALPVKMTAHSPCFRSEAGSY 277

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +     + PE S  +  +M     ++   LGL    +   +G +
Sbjct: 278 GRDTRGLIRMHQFDKVEMVQL-VHPEKSWDALEEMVGHAEKVLQLLGLPYRVVSLCTGDM 336

Query: 203 GGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           G   +     E  + A     ++    +  DF
Sbjct: 337 GFSAAKTYDLEVWLPAQNTYREISSCSNCTDF 368


>gi|77917941|ref|YP_355756.1| seryl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123575016|sp|Q3A7Q8|SYS_PELCD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|77544024|gb|ABA87586.1| seryl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 423

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 9/173 (5%)

Query: 46  GQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +        +E+  P + + D    +G+   +  ++  L   +D   
Sbjct: 168 GARLERALINFMLDLHTGEHKYVEILPPLMVNRDTMTGTGQLPKFESDLFHL---DDPDF 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I +  +LP  +      FR E     R   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRDEILADGDLPVCYAAYTPCFRKEAGSHGRDTRGLIRMHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             F   PE S     K+  +   +  RL L    +   +G IG   +  F + 
Sbjct: 285 VKF-ARPEESDQELLKLLDNAEEVLRRLKLPYRVVDLCTGDIGFSAARTFDIE 336


>gi|90413226|ref|ZP_01221221.1| seryl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90325778|gb|EAS42236.1| seryl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 430

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 19/241 (7%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFEVKDHVDLGEMAGGLDFASAVKISGSRFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           M VP L +AD    +G+   +G+++            M   PT E  +T++ R  I    
Sbjct: 195 MYVPYLVNADSLFGTGQLPKFGEDLFHTKPATEEGVGMSLIPTAEVPVTNMVRDTITDEA 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     R   G++R  +F   +       PE S  +  ++     
Sbjct: 255 DLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEELTGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 KVLQLLELPYRKVILCTGDMGFGAAKTYDLEVWVPAQETYREISSCSNMQDFQARRMQAR 373

Query: 239 F 239
           F
Sbjct: 374 F 374


>gi|87198872|ref|YP_496129.1| seryl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
 gi|123736268|sp|Q2GA28|SYS_NOVAD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|87134553|gb|ABD25295.1| seryl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
          Length = 426

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 16/214 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G       GQ A     +   + + Q    G +E   P L   +    +G+   + +++
Sbjct: 159 SGARFTFLKGQMARLHRALAQFMLDRQTGENGYMECIPPLLVKDEAVFGTGQLPKFAEDL 218

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            R  D         PT E  +T+  +  I     LP     +   FR E     R   G 
Sbjct: 219 FRTTD----GRWLIPTAEVSLTNAVQGQILGEAQLPLRMTALTPCFRSEAGAAGRDTRGF 274

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GD 205
           +R  +F   +  S    PE S+  + +M      I   LGL    +   +G +G      
Sbjct: 275 IRQHQFEKVELVSI-TRPEDSESEHERMTQCAEGILQALGLPYRKVLLCTGDMGFTARKT 333

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E  +       ++    +  DF     N  +
Sbjct: 334 YDLEVWLPGQGAYREISSCSNCGDFQARRMNARY 367


>gi|332796483|ref|YP_004457983.1| histidyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694218|gb|AEE93685.1| histidyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 426

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 143/433 (33%), Gaps = 43/433 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  +     + +  +     +   ++G +E   P L+  +L+   G  +     M    
Sbjct: 9   GMRDYFGEDAEKIRYIEEQFSKIVKKSGYMEAITPILEEFELFALKGG-EELRNTMYTFI 67

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+  + +   P     +  +F + ++ +   P   Y I   +R +  P+FG  R REF  
Sbjct: 68  DKGGREVALRPEFTPSIVRLFLNSMQ-HLPKPIRLYYIGTVYRYDE-PQFG--RYREFRQ 123

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----------DLS 207
                     E S ++  ++       F+++ L +I ++  +  I            D  
Sbjct: 124 AGIEMLG---ESSINADLEVLSLLWEFFNKINLTNITIKINNIAIYRELFSILKMSEDQE 180

Query: 208 HEFIVLADTGETQ--------VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
              + L D G           +  SK          N+   +   +  I +         
Sbjct: 181 DHLLHLIDKGNKDSVMEYLSNIADSKILNILREMLYNSISKESDFIELIKDMNDEHSKVL 240

Query: 260 SDVHNEKLFDSLPENKRVSARGIEV----GHIFYFGTKYSLPM-SATFKGADGKDHYVQM 314
            +  +          K      I++    G  +Y G  + +   S +F  A G  +   +
Sbjct: 241 ENQISRLFKIYEILAKLNVPIKIDLSLVRGLAYYTGVIFEVTHPSVSFSIAGGGRYDNLV 300

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVA----PFKISLINIKAHDQVCRDACEKIYA 370
             YG  +   +   I      + +    ++       KI++I +    +   D   K+  
Sbjct: 301 QLYGGPSTPSIGFAIGV---ERVLSVLQNLKIKDNARKIAIIPLN---ENVIDYALKVLF 354

Query: 371 RLSKVGCDVFWDDMGEQIGSQF-AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L +       +     +      + D+    + +I+G     ++KV IK   T  +  +
Sbjct: 355 ILHENDIPAILNTKNISLSKIIPNLLDMN-INIVIIIGENEKRENKVSIKDLTTRQQSSI 413

Query: 430 SLEEVINYASHRF 442
           SL +++ Y     
Sbjct: 414 SLNDLLPYIRQII 426


>gi|256959284|ref|ZP_05563455.1| histidyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|300861096|ref|ZP_07107183.1| histidine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|256949780|gb|EEU66412.1| histidyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|300850135|gb|EFK77885.1| histidine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|315034526|gb|EFT46458.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0027]
          Length = 433

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 129/426 (30%), Gaps = 33/426 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 204 GDLSHEFIVLADTGE---TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
              +     L D  E    ++           P    D  D      + E  +       
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILEYLNE 231

Query: 261 DVHNEKLFDSLPENKRVSARGIEV----GHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                    +   +       I+     G  +Y  T + +   A   GA  +      G 
Sbjct: 232 PSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGA--QSTICAGGR 289

Query: 317 YGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRD-------ACEKI 368
           Y      +          G GI     ++   ++ +  +   D            A  ++
Sbjct: 290 YNGLVEELGGPDTPGFGFGMGIERVLLTMEAEEVVIPALSELDAYVVGIGSETNVAALQL 349

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              +   G     D M  +  +QF  AD L   L + +G   +++  V +K   T   + 
Sbjct: 350 VQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVKSMATREEKA 409

Query: 429 MSLEEV 434
             L  +
Sbjct: 410 FPLSAI 415


>gi|262305697|gb|ACY45441.1| glu- + pro-tRNA synthetase [Aphonopelma chalcodes]
          Length = 134

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R ++     + G  +S      F+  + G+  +V   S+G+   R +  ++    D  G+
Sbjct: 17  RAVQGATSHHLGQNFSKMFEIVFEHPETGEKEFVYQNSWGLT-TRTIGVIVMVHGDNSGL 75

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
           + P  VAP ++ ++          +  ++  D CE +   L      V  D       G
Sbjct: 76  VLPPRVAPHQVVIVPCGITANLSDSDKKLLMDTCEALEKELHGASVKVKGDYRENYSPG 134


>gi|262171855|ref|ZP_06039533.1| seryl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|261892931|gb|EEY38917.1| seryl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 435

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +   ++ G  E
Sbjct: 135 DFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQFARLHRAIAQFMLDLHTDQHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           + VP L +A+    +G+   +G+++           D   + +   PT E  +T++ R  
Sbjct: 195 LYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|328871735|gb|EGG20105.1| seryl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 452

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 108/377 (28%), Gaps = 70/377 (18%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKG-------IYSWLPLGQKALDNVNAIIREE 60
           +    E     ++ +H  +L         +G        Y     G      +       
Sbjct: 132 VRTWGECKNTPDLLNHHHLLEMIDGFDMERGASISGHRCYFLKGPGVMLNQAIINYGLAF 191

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFR 119
             +     +  P     D+  E+ + + + +E+ +++ D  +       T E+ ++   R
Sbjct: 192 LAKRQYTALQTPFFMRKDVMAETAQLEQFDEELYKVSGDGEENEKYLIATSEQPISAFHR 251

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
                 ++LP  +      FR E     R  +G+ R  +F   +       PE S   + 
Sbjct: 252 GEWLEEKDLPKRYAGYSTCFRKEAGSHGRDTWGIFRVHQFEKIE-QFVITKPEDSWEMHE 310

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +M  +    +  LGL    +   S  +    + ++                         
Sbjct: 311 QMIKTAEEYYQELGLPYQVVSIVSSALNNAAAKKY------------------------- 345

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                      +  +   S        AR +E+      G K  
Sbjct: 346 ------------------DLEGWFPGYNAYRELVSCSNCTDYQARDLEI----RCGMK-- 381

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLIN 353
                  +G   K +   + S      RV+  ++E+     GI  P  + PF   ++ I 
Sbjct: 382 ------KQGQQQKRYVHMLNSTLAATTRVICCILENYQTEGGINVPTVLQPFMGGVTFIP 435

Query: 354 IKAHDQVCRDACEKIYA 370
                   + A +KI A
Sbjct: 436 FVKPKPKIKAAVQKINA 452


>gi|74317247|ref|YP_314987.1| seryl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|123611947|sp|Q3SJH9|SYS_THIDA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|74056742|gb|AAZ97182.1| seryl-tRNA synthetase, class IIa [Thiobacillus denitrificans ATCC
           25259]
          Length = 427

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 10/204 (4%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E+ VP + +A+    +G+   + +++  +   +   + 
Sbjct: 170 ARLHRALAQFMLDLHTTEHGYTEVYVPYVVNAESMRGTGQLPKFEEDLFHVPRSDADRLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I +   LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPVTNLVRDEIVAAEALPLKFVAHTPCFRSEAGSYGRDTRGMIRQHQFDKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S  +   +      +  RLGL    M   SG +G   +     E  + A   
Sbjct: 290 QM-VRPEDSYAALEGLAAHAETVLQRLGLPYRKMALCSGDMGFSAAKTYDLEVWLPAQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +F  F        F +
Sbjct: 349 YREISSCSNFEAFQARRMQARFRE 372


>gi|124026368|ref|YP_001015484.1| seryl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166222761|sp|A2C409|SYS_PROM1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123961436|gb|ABM76219.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 426

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
            ++   + +   + G +E+  P L +      SG+   + +E  R AD +   +   PT 
Sbjct: 178 RSLINFMLDLHIKKGYLEVLPPALVNTASLTGSGQLPKFAEESFRCADDD---LWLTPTA 234

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T + R  I     LP  +      FR E     R   G++R  +F   + Y F  T
Sbjct: 235 EVPITSLHRGEIIPRDLLPLKYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFS-T 293

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVF 222
           PE S+ +  ++      +   L L    ++  +G +G         E  +       ++ 
Sbjct: 294 PETSEDALEQITSDAESVLQELELPYRVIQLCTGDLGFSAKKTYDLEVWLPGANTFREIS 353

Query: 223 CSKDFMDF 230
              +  DF
Sbjct: 354 SCSNCGDF 361


>gi|255318826|ref|ZP_05360052.1| seryl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|255304082|gb|EET83273.1| seryl-tRNA synthetase [Acinetobacter radioresistens SK82]
          Length = 423

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDTARL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 310 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 368


>gi|94544923|gb|ABF34971.1| Histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 438

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 145/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 16  QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 75

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 76  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 131

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 132 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 186

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 187 SAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 246

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 247 AHFEAVKAML-------EALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 299

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +GI  P       I L  +    
Sbjct: 300 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGITLPIE-TEMDIYLAVLGDG- 351

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 352 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 409

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 410 KNNRSRQELEVSFED 424


>gi|78185357|ref|YP_377792.1| seryl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123580767|sp|Q3AV47|SYS_SYNS9 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78169651|gb|ABB26748.1| seryl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 425

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 10/204 (4%)

Query: 9   PILQENPRDAEIASHKLMLR--TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           P ++E   +    + +L L      +        + +  G +    +   + +     G 
Sbjct: 134 PRIEEGLEEHWQIAQRLNLFDTERSVRIAQSRFVTLMGQGARLERALINFMLDLHTSKGY 193

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L +      SG+   + +E  R AD +   +   PT E  +T + R  I    
Sbjct: 194 REVMPPVLVNTASLTGSGQLPKFAEESFRCADDD---LWLTPTAEVPVTSLHRDEIIPAD 250

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  +      FR E     R   G++R  +F   + Y F + P+ S+ ++ ++     
Sbjct: 251 QLPLRYSAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWF-VHPDQSEEAHQQITADAE 309

Query: 183 RIFHRLGLKSIPMRAESGPIGGDL 206
            +   L L    +   +G +G   
Sbjct: 310 AVLQALDLPYRVLDLCTGDLGFSA 333


>gi|83593105|ref|YP_426857.1| seryl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123526569|sp|Q2RTH5|SYS_RHORT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|83576019|gb|ABC22570.1| seryl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
          Length = 423

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAI 67
            PR        L    GM  + +    G    +  GQ A     +   + +      G  
Sbjct: 135 TPRQHFEIGESL---GGMDFEAAARLSGARFVVLKGQIARLERALGQFMLDLHITEHGYQ 191

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P L  A     +G+   + +++ R+    +      PT E  +T++    + +   
Sbjct: 192 EVQTPVLVRAPALQGTGQLPKFAEDLFRV----EGDFFLIPTAEVTVTNLVAGQVLAATA 247

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     +   G++R  +F   +  S  + P+ S     +M      
Sbjct: 248 LPLRMTAFTQCFRSEAGAAGKDTRGMIRQHQFEKVEMVSI-VHPDDSAAELERMTACAED 306

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +  RL L    M   +G +G         E  +       ++    +  DF     N  F
Sbjct: 307 VLKRLELPYRVMALCAGDVGFSARQTYDLEVWLPGQDRYREISSCSNTGDFQARRMNGRF 366


>gi|224542127|ref|ZP_03682666.1| hypothetical protein CATMIT_01302 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524964|gb|EEF94069.1| hypothetical protein CATMIT_01302 [Catenibacterium mitsuokai DSM
           15897]
          Length = 458

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 133/417 (31%), Gaps = 86/417 (20%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSADLWVESGRYDSYGKEMLRL 96
               P G    + +   IRE  +     E        ++  +L  E+         M  +
Sbjct: 109 PELHPDGWTP-EEMMTFIRE--HNIACPECGGHDFTDIRQFELMFET--------SMGVV 157

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   K  +   T + +  +       S + LPF   QI   FR+E+ P   + R+REF 
Sbjct: 158 KDAKSKIYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEITPGNFIFRTREFE 217

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +                      L  F +                             
Sbjct: 218 QME----------------------LEFFTK----------------------------P 227

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E   +  K   D      +   +         +Q    +  +    + +        + 
Sbjct: 228 NEDLEWFEKWRHDCMQFLYDLGINKENLRYRDHDQKELSF-YSKATTDIEYLYPFGWGEL 286

Query: 277 VSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSH 333
               GI     +  G   +YS   +  +   D  + Y   +    +GA R+  +V+  + 
Sbjct: 287 W---GIADRTDYDLGRHQEYSKK-NLEYLDPDTHEKYLPYVIEPSVGADRLFLSVLADAF 342

Query: 334 DGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + + +          +  ++AP K++++ +        D   ++Y  L K      +D  
Sbjct: 343 EEQKLENGDVRKVMHFHPALAPVKVAVLPLTKKQS---DEAMELYNDLVK-DFYCEYDQA 398

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G+ IG ++   D +G PL V V      D  V +++R T  +  + ++++  Y + +
Sbjct: 399 GQ-IGKRYRRQDAIGTPLCVTVDFDTAEDHSVTVRNRDTMEQIRLPIDQLKAYIADK 454


>gi|110669023|ref|YP_658834.1| seryl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121684671|sp|Q18FL9|SYS_HALWD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|109626770|emb|CAJ53238.1| serine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 460

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 111/342 (32%), Gaps = 63/342 (18%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G Y     G +    +   + +     G  ++  P   ++   V +G++  + ++  R
Sbjct: 164 GGGFYFAKGDGARLEHALVQFMLDIHREQGYQDVFPPIPVNSQSMVGTGQFPKFTEDAYR 223

Query: 96  LADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PR 146
           + + ND+          PT E  +T+++R  I    +LP         FR E        
Sbjct: 224 IGETNDEPWDNDDLWLCPTAEVPVTNMYRDEILLDDDLPVKIQAYTPNFRREAGEHGTET 283

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G++R  +F   +  +F + PE S   ++ +      +  RLGL    +   +G +G   
Sbjct: 284 RGIVRVHQFNKVELVNF-VRPEDSAERFDGLLTEAEVVLQRLGLPYRILEMCTGDLGFTQ 342

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                             K  ++   P ++      I                       
Sbjct: 343 ----------------RKKYDIEVWAPGDDMATGPDIG---------------------- 364

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG--SYGIGAMRV 324
                        R +EV  +  FG   S      ++    +           G+   RV
Sbjct: 365 ------------GRWLEVSSVSNFGAFQSRRAGLRYRPERHESASYLHTLNGSGVAVPRV 412

Query: 325 VAAVIESSHDGKG-IIWPDSVAPFKISLINIKAHDQVCRDAC 365
           + A++E   +  G I  P+ + P+   L  I+ HD V   A 
Sbjct: 413 MVAIMEYYQNDDGTITIPEPLQPYMNGLSVIEGHDPVGEAAV 454


>gi|227548800|ref|ZP_03978849.1| glycyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079130|gb|EEI17093.1| glycyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 460

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 116/347 (33%), Gaps = 42/347 (12%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFL 156
           D ++      P   + +   F++ + S R  P F    +   FR+E+ P   + R+REF 
Sbjct: 151 DDSEGLHYLRPETAQGIFVNFKNVMTSARMKPPFGIANMGKSFRNEITPGNFIFRTREFE 210

Query: 157 MKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
             +   F    E  + H Y     + L+ +  LG+    +R    P              
Sbjct: 211 QMEMEFFVKPGEDEQWHQYW--IDNRLQWYIDLGIDPENLRLYEHP-------------- 254

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E     SK  +D       T                           +  F     N+
Sbjct: 255 -KEKLSHYSKRTVDVEYAYNFTGSKWGELEGVANRTDYDLKTHAEASGEDLSFFDQETNE 313

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           R     IE       G      M A    A  +D      + G    RVV          
Sbjct: 314 RWIPYCIEPA--AGLG----RAMMAFLIDAYHEDEAP--NAKGGVDTRVV---------- 355

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +     +AP K++++ +    ++     E +   L +   +V +D  G  IG ++   
Sbjct: 356 --LKLDRRLAPIKVAVLPLSKKPELSGP-AEDLAQTLRQHW-NVDYDTSGA-IGRRYRRQ 410

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +G P  V      + D+ V ++ R T  +E + ++E+ +Y + + 
Sbjct: 411 DEIGTPFCVTFDFDSLEDNAVTVRERDTMQQERVKIDELESYLAAQL 457


>gi|294085497|ref|YP_003552257.1| Histidyl-tRNA synthetase, class IIa [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665072|gb|ADE40173.1| Histidyl-tRNA synthetase, class IIa [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 422

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 126/419 (30%), Gaps = 25/419 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP        V    R    + G  EM+ P  +  D++ +      D   K
Sbjct: 5   QPVRGTSDLLPADMAGHRFVVDHARAASAQYGFQEMATPIFEFTDVFSKPLGTSSDVVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  + +   P +   +     S     ++LP  F+     FR E RP+ G  R
Sbjct: 65  ETYSFEDRGGEQITLRPENTAGVVRAMISGGL-TQSLPLKFFYAGPMFRYE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F          T   +            R+   +G+    +      +G   S    
Sbjct: 121 MRQFHQIGIEYLGPTDALADAEIIACGA---RVLADIGVLDKCV-LHLNSLGDTESRLTY 176

Query: 212 VLADT----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             A      G              +       D     +  +           +  ++  
Sbjct: 177 RAALVDYLGGHKDALSDDSKQRLAVN-PLRILDSKDKGDREIIVAAPRLQDHLNDLSKAH 235

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           F++L      +    +   +   G  Y    +        GA G    +  G Y   +  
Sbjct: 236 FETLTTALDAAKIAWQFDPLLVRGLDYYCHTAFEFITDALGAQGT--VLGGGRYDGLSEM 293

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLIN---IKAHDQVCRDACEKIYARLSKVGCDVF 380
           +    I       GI     +A     ++    + + D        ++   L   G  V 
Sbjct: 294 LGGPAIAGVGWAGGIERLAMLAAGGTVVVPQLAVVSADSESDHHAFQLAESLRDAGFSVD 353

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
               G  +G +    D  G  + +I+G   V    V++++   G +++++ + ++   S
Sbjct: 354 LPTAGN-MGKKMKKLDKAGIKIAIILGGDEVERGVVQLRNLADGSQDEVTRDALVKALS 411


>gi|261339231|ref|ZP_05967089.1| hypothetical protein ENTCAN_05465 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319086|gb|EFC58024.1| serine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 430

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ       +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++      +++A        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMDALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    M   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLELLGLPYRRMALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDF 365


>gi|254786029|ref|YP_003073458.1| seryl-tRNA synthetase [Teredinibacter turnerae T7901]
 gi|259516191|sp|C5BIK4|SYS_TERTT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|237685707|gb|ACR12971.1| serine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 426

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 12/207 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E+ VP + + D    +G+   + +++ +L  R+D+   
Sbjct: 170 ARLHRALIQFMLNTHTGEHGYDEIYVPYIVNKDSLYGTGQLPKFEEDLFKL--RDDRDFY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPVTNMMRDEIIDEKQLPVRFACHTPCFRSEAGSYGRDTRGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F + P  S  +   +      I  +L L    +    G  G   +     E  + +   
Sbjct: 288 QF-VKPGESMAALESLVGHAETILQKLSLPYRKVILCGGDTGFSSTKTYDLEVWLPSQNT 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +F DF        + +  +
Sbjct: 347 YREISSCSNFGDFQARRMKARYRNAET 373


>gi|257466068|ref|ZP_05630379.1| histidyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917224|ref|ZP_07913464.1| histidyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691099|gb|EFS27934.1| histidyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 413

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 131/407 (32%), Gaps = 42/407 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYG 107
            + ++ I ++     G   +  P  +  DL+    G   D   KEM    DR D+++   
Sbjct: 21  YNYISEIAKQVFESYGCQFIKTPIFEETDLFKRGIGEATDVVEKEMYTFKDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +    +     FY     FR E RP+ G  R REF            
Sbjct: 81  PENTASVVRSYLENAIYAKEDVSRFYYNGSMFRYE-RPQAG--RQREFNQIGVEILGEKS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE------SGPIGGDLSHEFIVLA--DTGET 219
                    M     ++  +LG+  + +R        S         E+      D  E 
Sbjct: 138 PILDAEIIAMG---YKLLQKLGITDLEVRINCIGSNASRTEYRKKLLEYFTPMKEDLCED 194

Query: 220 QVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                +      +  + + D  D                  +      +F          
Sbjct: 195 CKNRLERNPLRVLDCKVDHDKMDGAPSIIDSLFEEERAHYEAVKKYLTIFGVPFVEDPGL 254

Query: 279 ARGIEVG--HIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIE 330
            RG++     +F       G++ ++     +     +     + ++G  + +  +  ++E
Sbjct: 255 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKQLGDKDIAAFGFASGVERIMMLLE 314

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                          P K + + I    +   +   +I A L +    V  D   +  G 
Sbjct: 315 DY-------------PKKATDVYIAWLGENTLEKAMEITALLRENNLKVAVDYNSK--GM 359

Query: 391 Q--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +     AD L     VI+G   ++ + V +K+  T  +E++S+E ++
Sbjct: 360 KSHMKKADKLNTKYCVILGEDELAKNVVVLKNFKTREQEEVSVENIL 406


>gi|19746998|ref|NP_608134.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|32130117|sp|Q8NZ19|SYH_STRP8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19749254|gb|AAL98633.1| putative histidine-tRNA ligase [Streptococcus pyogenes MGAS8232]
          Length = 426

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 143/433 (33%), Gaps = 57/433 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LFEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---DFDDIISL 245
                       P+   LS +     D    +V  SK+  D     +     D+ D  S 
Sbjct: 175 AAYRQALIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 246 NSIVEQWTAPYA----ATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYFGTKYSLPMSA 300
                      A       D +  +  D            +E        G +Y      
Sbjct: 235 AHFEAVKDMLEALNIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYD----- 289

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G  G       G +G+G  R++  +     + +GI  P       + L  +      
Sbjct: 290 SLVGYFGGPETPGFG-FGLGLERLLMVI-----EKQGITLPIE-TEMDVYLAVLGDG--- 339

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   + + G     D +G +I +QF  AD     L + +G   V   K  IK+
Sbjct: 340 ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKN 399

Query: 421 RLTGIREDMSLEE 433
             +    ++S E+
Sbjct: 400 NRSRQEVEVSFED 412


>gi|262305745|gb|ACY45465.1| glu- + pro-tRNA synthetase [Hadrurus arizonensis]
          Length = 134

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+ G   + G  +S      F+  +  +  +V   S+G+   R +  ++    D  
Sbjct: 15  SGRAIQGGTSHHLGQNFSKMFEIVFEDPETNEKKFVYQNSWGLT-TRTIGVMVMIHGDNL 73

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++       +  DA       CE +   L+     V  D       
Sbjct: 74  GLVLPPKVASVQVIIVPCGITASLSEDAKQDLMCKCEDLEYLLANANIRVKRDCRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|159905440|ref|YP_001549102.1| histidyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|229558695|sp|A9A947|SYH_METM6 RecName: Full=Histidyl-tRNA synthetase
 gi|159886933|gb|ABX01870.1| histidyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 418

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDS 88
            ++ Q  KG   +LP   K   N+   +R+  +     E++ PT +S +L   ++G  + 
Sbjct: 1   MLMFQKPKGTRDFLPEEMKKRKNIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG--EE 58

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             K++    D  D+ M   P     +   + +  K+    P   Y     FR E  P+ G
Sbjct: 59  IRKQLFVFKDHGDREMGLRPELTSSVARFYINEFKNT-PKPVKLYYFTNCFRYE-NPQAG 116

Query: 149 VMRSREFLMK------------DAYSFDLTPEGSKHSYNKMFVSY------LRIFHRLGL 190
             R REF               DA   +L  EG K       ++         +F +  L
Sbjct: 117 --RYREFWQMGSELIGSKKPIADAEVINLAIEGLKEINMDFEINIGHLGVLKGVFEKYDL 174

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I  +            E++         F +       + I     + E
Sbjct: 175 SDDEGNEIRRLIDKEDMDGLKTALSRIESEKNIEISEKVFEVLELKGGREVIS---KLKE 231

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           + +   ++ + + N         ++ +   GI  G  +Y G  +       +   +G   
Sbjct: 232 KLSEFESSVTALENLDSILEFVPHEYIINFGIARGLDYYTGMVFE-----IYGKREGARQ 286

Query: 311 YVQMGSYGIGAMRVVAA----VIESSHDGKGIIWP------DSVAPFKISLINIKAHDQV 360
               G Y    + +        +  ++    I+        +  + F + + +       
Sbjct: 287 VCGGGRYD-NLIELFEGEPSPAVGFAYGFDRIMLNIDDFEVEEESIFVVPVKSSDMLLNE 345

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    + +          V  D MG ++      A+  G    +IVG   + + KV +K+
Sbjct: 346 CLKIAKTLRDAGKA----VELDLMGRKLNKALNYANTKGIKKVLIVGENDILEGKVALKN 401

Query: 421 RLTGIREDMSLEEVIN 436
             TG +  + L++++ 
Sbjct: 402 METGEQSLIELKDILT 417


>gi|15827170|ref|NP_301433.1| histidyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229648|ref|YP_002503064.1| histidyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|13432210|sp|P46696|SYH_MYCLE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|3136015|emb|CAA19087.1| histidyl-tRNA synthetase [Mycobacterium leprae]
 gi|13092718|emb|CAC30002.1| histidyl-tRNA synthase [Mycobacterium leprae]
 gi|219932755|emb|CAR70587.1| histidyl-tRNA synthase [Mycobacterium leprae Br4923]
          Length = 427

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 134/431 (31%), Gaps = 41/431 (9%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
            KGI  + P        V   +     R G  ++ +P  +   L+        D   KEM
Sbjct: 13  PKGIPDYFPPDSAQFVAVRDGLLTAARRAGYGDIELPVFEDTALFARGVGESTDVVAKEM 72

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              ADR D+++   P     +      H      LP         FR E RP+ G  R R
Sbjct: 73  YTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG--RCR 129

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLS 207
           +       +  +           +  +    F  LGL    +   S       P    L 
Sbjct: 130 QLQQVGVEAIGVDDPALDAEVITIADA---GFRSLGLDGFQLEITSLGDGTCRPQYRKLL 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            EF++  D  E     ++      +  +      + +   ++    +  A          
Sbjct: 187 QEFLLQLDLDEDTRRRAELNPLRVLDDKRPQVQAMTAAAPVLLDHLSDGAKQHFDTVLAH 246

Query: 268 FDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQM 314
            D+L     ++ R             E  H    G +  +     + G         +  
Sbjct: 247 LDALRVPYVINPRMVRGLDYYTKTTFEFVHPG-LGAQSGIGGGGRYDGLMRQLGGQDLSG 305

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +G+G  R + A+     +GK +        F +SL       +  +     +  +L  
Sbjct: 306 IGFGLGVDRTLLAL---HAEGKTVGETTRCDVFGVSL------GEAAKLKVAMLAGQLRA 356

Query: 375 VGCDV--FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G  V   + D G + G+    A   G  + +IV    +    V ++   TG +  ++++
Sbjct: 357 AGVRVDLIYGDRGIR-GAM-RAAGRSGARIALIVDDCAIKADGVGVRDLATGEQISVAVD 414

Query: 433 EVINYASHRFS 443
            V+     R +
Sbjct: 415 SVVAEVISRIA 425


>gi|15641123|ref|NP_230755.1| seryl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591279|ref|ZP_01678574.1| seryl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121726249|ref|ZP_01679539.1| seryl-tRNA synthetase [Vibrio cholerae V52]
 gi|147674801|ref|YP_001216578.1| seryl-tRNA synthetase [Vibrio cholerae O395]
 gi|153213559|ref|ZP_01948849.1| seryl-tRNA synthetase [Vibrio cholerae 1587]
 gi|153816911|ref|ZP_01969578.1| seryl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153823886|ref|ZP_01976553.1| seryl-tRNA synthetase [Vibrio cholerae B33]
 gi|153824956|ref|ZP_01977623.1| seryl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|153828114|ref|ZP_01980781.1| seryl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|227081283|ref|YP_002809834.1| seryl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229505295|ref|ZP_04394805.1| seryl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229511035|ref|ZP_04400514.1| seryl-tRNA synthetase [Vibrio cholerae B33]
 gi|229515492|ref|ZP_04404951.1| seryl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229518156|ref|ZP_04407600.1| seryl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229525721|ref|ZP_04415126.1| seryl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229529801|ref|ZP_04419191.1| seryl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229608314|ref|YP_002878962.1| seryl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254225503|ref|ZP_04919113.1| seryl-tRNA synthetase [Vibrio cholerae V51]
 gi|254848239|ref|ZP_05237589.1| seryl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255745522|ref|ZP_05419470.1| seryl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|258621723|ref|ZP_05716754.1| seryl-tRNA synthetase [Vibrio mimicus VM573]
 gi|258626331|ref|ZP_05721178.1| seryl-tRNA synthetase [Vibrio mimicus VM603]
 gi|262158404|ref|ZP_06029520.1| seryl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262165386|ref|ZP_06033123.1| seryl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262170266|ref|ZP_06037953.1| seryl-tRNA synthetase [Vibrio cholerae RC27]
 gi|298498786|ref|ZP_07008593.1| seryl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|30173216|sp|Q9KSZ6|SYS_VIBCH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|172047403|sp|A5F2H1|SYS_VIBC3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783501|sp|C3LU07|SYS_VIBCM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|9655580|gb|AAF94269.1| seryl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546863|gb|EAX57021.1| seryl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121631195|gb|EAX63568.1| seryl-tRNA synthetase [Vibrio cholerae V52]
 gi|124115895|gb|EAY34715.1| seryl-tRNA synthetase [Vibrio cholerae 1587]
 gi|125621973|gb|EAZ50297.1| seryl-tRNA synthetase [Vibrio cholerae V51]
 gi|126512498|gb|EAZ75092.1| seryl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126518589|gb|EAZ75812.1| seryl-tRNA synthetase [Vibrio cholerae B33]
 gi|146316684|gb|ABQ21223.1| seryl-tRNA synthetase [Vibrio cholerae O395]
 gi|148876356|gb|EDL74491.1| seryl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|149741468|gb|EDM55498.1| seryl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|227009171|gb|ACP05383.1| seryl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|227012925|gb|ACP09135.1| seryl-tRNA synthetase [Vibrio cholerae O395]
 gi|229333575|gb|EEN99061.1| seryl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229339302|gb|EEO04319.1| seryl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229344871|gb|EEO09845.1| seryl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229347261|gb|EEO12221.1| seryl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229351000|gb|EEO15941.1| seryl-tRNA synthetase [Vibrio cholerae B33]
 gi|229357518|gb|EEO22435.1| seryl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229370969|gb|ACQ61392.1| seryl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254843944|gb|EET22358.1| seryl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255736597|gb|EET91994.1| seryl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|258581383|gb|EEW06285.1| seryl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258585954|gb|EEW10672.1| seryl-tRNA synthetase [Vibrio mimicus VM573]
 gi|262021281|gb|EEY39995.1| seryl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262025102|gb|EEY43770.1| seryl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262029845|gb|EEY48493.1| seryl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|297543119|gb|EFH79169.1| seryl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|327483814|gb|AEA78221.1| Seryl-tRNA synthetase [Vibrio cholerae LMA3894-4]
          Length = 435

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +   ++ G  E
Sbjct: 135 DFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQFARLHRAIAQFMLDLHTDQHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           + VP L +A+    +G+   +G+++           D   + +   PT E  +T++ R  
Sbjct: 195 LYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|307719261|ref|YP_003874793.1| histidyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306532986|gb|ADN02520.1| histidyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 437

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 131/445 (29%), Gaps = 49/445 (11%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +  KG   +LP  +    ++   + E     G + +  P L+ A+ L  +SG    
Sbjct: 1   MIQPRVLKGFRDFLPDLEARKKSIVRTLEEVFTSFGYLPIDTPVLEYAEILLGKSG--GE 58

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             K++ R  D   + +                H  +   LPF  Y I   FR E   R  
Sbjct: 59  TEKQVYRFTDHGGRDVALRFDLTVPFARFMAQH-MAELYLPFRRYHIAKVFRGENTQR-- 115

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFV-------------------SYLRIFHRLG 189
             R REF+  D          +      +                            RLG
Sbjct: 116 -GRYREFMQCDFDIVGPDSTSADLEVLLIMQKALASLGMERFTIHLSHRGVLQDFLARLG 174

Query: 190 LKSIPMRAES----GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +        +      IG +   E   LA   + +          P          +   
Sbjct: 175 VSEPVEVLRTVDKIRKIGREKVRE--TLAQLSDEERAGRILDFIAPGSEPEEALSRMEEG 232

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A       V  E              RG++      F T  S         +
Sbjct: 233 VGADNPHLARLKEIWAVIGELGLAGFFTIDPSITRGLDYYTGVVFETFLSDLPDIGSVCS 292

Query: 306 DGKDHYVQ-------MGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            G+   +        M   G    +  + A ++     + I    ++AP  + +      
Sbjct: 293 GGRYDNLVGLYSTQSMSGVGASIGLDRLMAAMQELGMLEAI---PTMAPEVLVVC----M 345

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++        + A L   G          ++G QF+ A+  G P  +I+G   ++   + 
Sbjct: 346 EERFLAHYHGVAAALRARGVRTEVYPQARKLGQQFSYAEKKGIPFALIMGEDEIAAGTMA 405

Query: 418 IKHRLTGIREDMS-LEEVINYASHR 441
           +K  +   +  +  LEEV++   +R
Sbjct: 406 LKDLVARTQRVVQGLEEVVDAVEYR 430


>gi|229163896|ref|ZP_04291836.1| Glycyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228619517|gb|EEK76403.1| Glycyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 458

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 117/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +     +       LG+                 
Sbjct: 211 FTFRTREFEQMELEFF-CKPGEDLEWFAFWRETCKNWLLSLGMH---------------- 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|29832178|ref|NP_826812.1| glycyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|59798584|sp|Q82BR9|SYG_STRAW RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|29609296|dbj|BAC73347.1| putative glycyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 460

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/466 (15%), Positives = 152/466 (32%), Gaps = 68/466 (14%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQS 76
           L  R G +   S      K  + + PLG +  +N+          +    + +    + +
Sbjct: 12  LSKRRGFVFPCSEIYGGQKAAWDYGPLGVELKENIKRQWWRYMVTSREDVVGIDSSVILA 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ++WV SG   ++   +      + +        E       RS      ++       +
Sbjct: 72  TEVWVASGHVATFSDPLTECTSCHKRYRA-DHLEEAYEAKHNRSPENGLADINCPNCGNK 130

Query: 137 LKFRDELRPRFGVMRSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LGLKS 192
            +F  E +   G++ +             L PE ++  +   F    +   R    G+  
Sbjct: 131 GQF-TEPKQFSGLLSTHLGPTQDSGSVAYLRPETAQGIFTN-FAQVQQTSRRKPPFGIAQ 188

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                    +G    +E         T+ F   +   F  P E+  + +       +++ 
Sbjct: 189 ---------MGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEKWQEFW-----MQER 234

Query: 253 TAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFG-------------TKYSLP 297
              Y           +   P  K    S R  ++ + F FG             T Y L 
Sbjct: 235 WNWYTGLGLREENMRWYDHPAEKLSHYSKRTADIEYRFQFGGNEWGELEGVANRTDYDLS 294

Query: 298 MSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------------ 337
             A   G D        G+     +     G  R + A +  ++                
Sbjct: 295 AHAKASGQDLSYFDQEAGERWTPYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGKMEKRT 354

Query: 338 -IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +     ++P K++++ +  + +      + +   L +   ++ +DD G  IG ++   D
Sbjct: 355 VLRLDPRLSPVKVAVLPLSRNPE-LSPKAKGLATALRQHW-NIEFDDAGA-IGRRYRRQD 411

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G P  V V    + D+ V ++ R +  +E +SL+++  Y + R 
Sbjct: 412 EIGTPFCVTVDFDTLDDNAVTVRERDSMKQERVSLDQIEGYLAARL 457


>gi|332522579|ref|ZP_08398831.1| histidine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332313843|gb|EGJ26828.1| histidine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 425

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 140/439 (31%), Gaps = 47/439 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V A+ RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPEEAAKWQYVEAVARETFEKYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ ++ +   P   E    + RS +++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGERHITLRP---EGTAPVVRSFVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      S      M      +F  LG+K I +   S       
Sbjct: 120 AG--RLREFHQIGVECFGSANPASDVETIAMAN---HLFETLGIKDITLHINSLGNPTSR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +  +  
Sbjct: 175 AAYRQALIDYLTPMREQLSKDSQRRLDENPLRVLDSKEKEDKIAVENAPSILDYLD-DES 233

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGA-D 306
              +    A  +D+    + D+                IF F  T  +  ++    G  D
Sbjct: 234 QAHFETVKAMLADLEIPYVIDTNMVRGLDYYNH----TIFEFMATVDNSELTICAGGRYD 289

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQVCRDAC 365
           G   Y            +    +    + +GI  P  V P   + +  +           
Sbjct: 290 GLVSYFNGPETPGFGFGLGLERLLLILEKQGITLP--VVPGMDVYVAVLG---DRANSKA 344

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +   L + G  V  D +G +I +QF  AD     + + +G   V   KV +K+  +  
Sbjct: 345 LALVQSLRRQGFKVERDYLGRKIKAQFKSADSFKAKVIMTLGESEVEAGKVTLKNNQSRQ 404

Query: 426 REDMSLEEVINYASHRFSN 444
             + S EE+ N      S 
Sbjct: 405 EIEASFEEISNDFPRLLSK 423


>gi|239825598|ref|YP_002948222.1| seryl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259511672|sp|C5D340|SYS_GEOSW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|239805891|gb|ACS22956.1| seryl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 424

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  E+  P L +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGLGARLERALINFMLDVHIEEFGYQEILPPYLVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 223 TDD---YFLIPTAEVPVTNLHRDEILSAEDLPIYYVAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     RI   LGL    +   +G +G   +  + + 
Sbjct: 280 QFNKVELVKF-VKPEDSYDELEKLTNQAERILQLLGLPYRVVCLCTGDLGFSSAKTYDIE 338


>gi|58617455|ref|YP_196654.1| histidyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|75507481|sp|Q5FG57|SYH_EHRRG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|58417067|emb|CAI28180.1| Histidyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 414

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 137/422 (32%), Gaps = 60/422 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYGP 108
              +  + +   +R G I +  P ++  +++ + G   D   KEM    D+  + +   P
Sbjct: 23  FQYIQHLAQTIASRYGFIPVDTPIIEFTEVFTKLGNTSDIVTKEMYNFKDKAGEDITLRP 82

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
              E  + I R  I     +P   +     FR E RP+    R R+F   +   F     
Sbjct: 83  ---EFTSAIVRLLISKNLTIPVKLFSSGPVFRYE-RPQK--CRQRQFHQINFEFFGSDSP 136

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------------------DLSH 208
            +      M      I   L L    ++ E   +G                     DLS 
Sbjct: 137 IADVE---MISLCYNILSELKLSDR-IKLEINFLGDQETINSYKIHLVEYLNKYQKDLSE 192

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +          ++  SK   D  I        D  + NS            +   N  + 
Sbjct: 193 DSQRRLVVNPLRILDSKSPEDCKILLNAPSISDFYTQNSQNFFKEVLDGLDNLSINYVIN 252

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGKDHYVQMGSYGIGAMRV 324
            ++        + +        G++ S+     + G      G        + G+     
Sbjct: 253 HNIVRGLDYYCKTVFEFTTSELGSQNSVIAGGRYDGLVKSMGGHSTPAIGFAAGV---ER 309

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD- 383
           ++A+I+  H            P +I LI I            K+   L   G  V W++ 
Sbjct: 310 LSALIDYEHKK----------PKRIVLIPIGDD---ATSYAIKLAYELRCKGIHVCWNNY 356

Query: 384 MGEQIGSQFAVADLLGFP---LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            G  +       +L       + +I G + +  + V++K   TG ++++++ ++++   H
Sbjct: 357 RGTSL-----KNELRKANDTDIVLIFGDEELQSNTVKVKDMKTGDQQNVAVCDLLDNLLH 411

Query: 441 RF 442
           R 
Sbjct: 412 RI 413


>gi|257060727|ref|YP_003138615.1| seryl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256590893|gb|ACV01780.1| seryl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 427

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+  P L ++D    +G+   + +E  + +   +  + 
Sbjct: 176 GAALERALINFMLDCQINAGYLEVIPPVLINSDSLQGTGQLPKFAEESFKCS---EDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYRDEIVEAEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+  +  +  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KL-VHPETSEAEHQSLVNNAEAILQALKLPYRVLELCTGDLGFGATKCYDLEVWLPSSGT 351

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 352 YREISSCSNCGDF 364


>gi|218247950|ref|YP_002373321.1| seryl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|226701390|sp|B7JY63|SYS_CYAP8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218168428|gb|ACK67165.1| seryl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 427

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+  P L ++D    +G+   + +E  + +   +  + 
Sbjct: 176 GAALERALINFMLDCQINAGYLEVIPPVLINSDSLQGTGQLPKFAEESFKCS---EDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYRDEIVEAEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+  +  +  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KL-VHPETSEAEHQSLVNNAEAILQALKLPYRVLELCTGDLGFGATKCYDLEVWLPSSGT 351

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 352 YREISSCSNCGDF 364


>gi|159903816|ref|YP_001551160.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|159888992|gb|ABX09206.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 442

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 12/200 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G +    +   + +  ++ G +E+  P L +      SG+   + +E  R A 
Sbjct: 181 FVTLLNQGARLERALINFMLDMHSKKGYLEVLPPVLVNTASLTASGQLPKFSEESFRCA- 239

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 240 --EDDLWLTPTAEVPLTSLHRGEIIPSEELPIKYVAYTPCFRREAGSYGRDTRGLIRLHQ 297

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + + F + PE S  ++ ++      I   L L    +   +G +G   S     E 
Sbjct: 298 FNKVELFWF-VHPEKSPAAHEQITKDAESILQALELPYRVLELCTGDLGFSASRTYDLEV 356

Query: 211 IVLADTGETQVFCSKDFMDF 230
            +       ++  S    DF
Sbjct: 357 WLPGANAYREISSSSICNDF 376


>gi|323498308|ref|ZP_08103310.1| seryl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323316736|gb|EGA69745.1| seryl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 435

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLM--LRTGMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +  L  G+    +    G    +  GQ A     +   + +   +  G  E
Sbjct: 135 DFELKDHVDLGELGGGLDFASATKITGARFIVMKGQFARLHRAIAQFMLDLHTDEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +GK++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLEEKVNDEEPRKLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 255 ISDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEESMNALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|262378914|ref|ZP_06072071.1| seryl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|262300199|gb|EEY88111.1| seryl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 425

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 135 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDTARL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 312 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 370


>gi|229087427|ref|ZP_04219561.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228695849|gb|EEL48700.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 455

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 117/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 148 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +     +       LG+                 
Sbjct: 208 FTFRTREFEQMELEFF-CKPGEDLEWFTFWRNTCKNWLLALGMN---------------- 250

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 251 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 295

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 296 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 335

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 336 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGAGEVFAELAK-DFVV 391

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 392 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 450

Query: 440 HRFS 443
            +  
Sbjct: 451 KKIQ 454


>gi|323333769|gb|EGA75160.1| YER087W-like protein [Saccharomyces cerevisiae AWRI796]
          Length = 294

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 3/141 (2%)

Query: 215 DTGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +  SK    MD  + S++   D  +              +  D    ++     
Sbjct: 148 EKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGKCE 207

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIES 331
           E +    + IEVGHIF  G KYS P++  F   + K+     MG YGIG  R+V A+ E 
Sbjct: 208 EGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKENKNETFVHMGCYGIGVSRLVGAIAEL 267

Query: 332 SHDGKGIIWPDSVAPFKISLI 352
             D  G  WP  +AP+K+S+ 
Sbjct: 268 GRDSNGFRWPAIMAPYKVSIC 288



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+SG IGG+ S EF ++ ++
Sbjct: 1   MKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADSGDIGGEFSKEFHLIHES 60

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           GE  +   K   D      +  + +     S               H+  +    P++++
Sbjct: 61  GEDTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALT---KDHSTLICFYYPKDRQ 117

Query: 277 VSA 279
           ++ 
Sbjct: 118 LNW 120


>gi|319404548|emb|CBI78154.1| Seryl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 425

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   +  G  E+SVP L   ++   + +   + +++ R  D          T
Sbjct: 176 RALGQFMLDMHVDEHGYQEISVPLLVRDEIVYGAAQLPKFSEDLFRTID----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  + ++  S I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLVNLVNSEILDITELPLRFTSLTPCFRSEAGAAGRDTRGMLRQHQFRKVELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           T E S     +M      +  RLGL    +   +G +G
Sbjct: 291 TEEQSLEELERMTECAENVLKRLGLPFRTVVLSTGDMG 328


>gi|150002813|ref|YP_001297557.1| glycyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254882314|ref|ZP_05255024.1| glycyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294777258|ref|ZP_06742713.1| glycine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|319643076|ref|ZP_07997707.1| glycyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|149931237|gb|ABR37935.1| glycyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254835107|gb|EET15416.1| glycyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294448878|gb|EFG17423.1| glycine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|317385244|gb|EFV66192.1| glycyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 513

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 121/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTADGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K   + L+    LG              GD  + F 
Sbjct: 261 MREFEQMEMQ-FFVKPGTELEWFPKWKETRLKWHKALGF-------------GDDHYRFH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I       +     +H+   FD  
Sbjct: 307 ----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 AYTEETLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIMNDL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  + V  + + D+ V +++R T  +E +++ E+ N  + + 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCITVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|317154684|ref|YP_004122732.1| seryl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944935|gb|ADU63986.1| seryl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 425

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 15/205 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + + Q    G  E+  P + +      +G+   + +++
Sbjct: 158 AGSRFALSFGWCARLERALAQFMLDTQTTLHGYTEVIPPYIVNRRTMTGTGQLPKFEEDL 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +L           PT E  +T+I+   +     LP  F      FR E     +   G+
Sbjct: 218 FKL---EGVDSFLIPTAEVPLTNIYAGEVIDEAALPVKFCAHTPCFRSEAGSYGKDTKGL 274

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +  +F   P+ S  +   M  +  +I   LG+    +   +G +G   +  
Sbjct: 275 IRLHQFHKVEMVNF-AHPDTSYEALEAMTAAAEKILQLLGIHYRVIELCTGDMGFGATKT 333

Query: 209 ---EFIVLADTGETQVFCSKDFMDF 230
              E  +       ++    +  DF
Sbjct: 334 YDIEVWLPGQNQYREISSCSNCGDF 358


>gi|261210729|ref|ZP_05925021.1| seryl-tRNA synthetase [Vibrio sp. RC341]
 gi|260840214|gb|EEX66794.1| seryl-tRNA synthetase [Vibrio sp. RC341]
          Length = 435

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +   ++ G  E
Sbjct: 135 DFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQFARLHRAIAQFMLDLHTDQHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           + VP L +A+    +G+   +G+++           D   + +   PT E  +T++ R  
Sbjct: 195 LYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|148658650|ref|YP_001278855.1| histidyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148570760|gb|ABQ92905.1| histidyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 457

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 129/445 (28%), Gaps = 50/445 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP        +   +     R G   +  P ++ A+     G+     K + R  
Sbjct: 10  GMRDHLPSAMILRQYIIDTLTSVFERYGFEPLQTPVVEYAETLD--GKIGDDEKLIYRFE 67

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   + +      + V      +  +     P+  Y I   +R E RP  G  R RE   
Sbjct: 68  DHGGRKVALR-YDQTVPLARVVAQYQGQLLFPWRRYAIGQSYRGE-RPGRG--RYRELWQ 123

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP-----------MRAESGPIGGDL 206
            D          +      +    L      G  ++            +        GD+
Sbjct: 124 ADIDIVGSASPLADAEILAVLTDALTALGFTGFTTLISHRQILGGIARVSGLDDAAAGDV 183

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSE-----------NTDFDDIISLNSIVEQWTAP 255
                 L   G   V            +            + D         +     A 
Sbjct: 184 YRAIDKLDKIGIDGVRNDLLQSGVSTAAAERILALIDLQGDADEVLNALAQQLQGDERAL 243

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKY-----SLPMSATFKGADGK 308
            A  +         ++   +        +  G  +Y G  +     + PM +   G  G+
Sbjct: 244 QAIDNVRAIIGYARAMGVPEERIVIAPRLARGLSYYTGAVFESIVQNPPMGSLLGG--GR 301

Query: 309 DHYVQ-MGSYGIGAMRVVAAVIESSHD-----GKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +  M +        +A  IE  HD     G G     ++A   ++L N     +  R
Sbjct: 302 YDELIGMFAGRSIPTVGLAFGIERLHDVMEELGMGPA-SRTIATAFVTLFNPDMAAESLR 360

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +   L + G  V    D  E++G Q   AD  G P  +++G   ++  +V +K  
Sbjct: 361 -----LAQELRRAGLLVETALDPSEKLGKQLQYADRRGIPYALVIGPDELARGEVVVKDL 415

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +G ++ +    V +         R
Sbjct: 416 RSGAQQSVVRSAVASQLRSAADARR 440


>gi|261252179|ref|ZP_05944752.1| histidyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260935570|gb|EEX91559.1| histidyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 422

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 138/428 (32%), Gaps = 30/428 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENTVKNVVSAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRSCIENSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGID-KHVRLELNSIGSLEDRANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     +        D            + + N  V+         SD   E+  +  
Sbjct: 178 RTALIAFLEQHIDILDDDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKEHF 237

Query: 272 -PENKRVSARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHYVQMGSYGI 319
               + + A GIE         G  Y         +  + A      G  +   +   G 
Sbjct: 238 AGLCELLDAAGIEYTVNERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGG 297

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV- 375
            A   V   +      + ++  +++   ++     + +    +    A  K+   L +  
Sbjct: 298 KATPAVGFAMGL---ERLVLMLETLELTEVRRSVDVYMVTAGEGTMMAGMKLAESLREQV 354

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V     G     QF  AD +G  + +++G   V+D+ V +K  + G +E  S  +V
Sbjct: 355 SGLRVMNHFGGGNFKKQFKRADKVGAAVALVLGENEVADNTVVLKDLIGGTQETYSQTDV 414

Query: 435 INYASHRF 442
           I   S   
Sbjct: 415 IAKLSELV 422


>gi|330834490|ref|YP_004409218.1| Ser-tRNA(Thr) hydrolase [Metallosphaera cuprina Ar-4]
 gi|329566629|gb|AEB94734.1| Ser-tRNA(Thr) hydrolase [Metallosphaera cuprina Ar-4]
          Length = 386

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
              P  ++P  + ++ +   ++V     +K    L + G  V  DD+ E IG +   A +
Sbjct: 265 PSLPLWLSPIHVRVLKLTESEEV-----DKFSLSLKERGIRVQVDDLDEGIGKKIRRAGM 319

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              P   IVG + +    + +K R    ++ M++EE+      
Sbjct: 320 DWIPYVAIVGERELQTKNLTVKVRDGSEQKPMTVEELEKVVRE 362


>gi|148255774|ref|YP_001240359.1| seryl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|166200604|sp|A5EJV9|SYS_BRASB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|146407947|gb|ABQ36453.1| seryl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
          Length = 442

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 99/314 (31%), Gaps = 74/314 (23%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR---------LADRN 100
             +   + +      G  E++ P L   D+   +G+   +  +              +R 
Sbjct: 175 RAIGQFMLDLHTTEHGYTEINPPLLVRNDVMFGTGQLPKFEDDQFWAVRGELLIAPDERL 234

Query: 101 DKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
               +   PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F
Sbjct: 235 KTERLGLIPTAEVALTNLVRESIVDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQF 294

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +  S   TPE SK  + +M      +  RL L    +   +G +G      + +   
Sbjct: 295 TKVELVSI-TTPETSKDEHERMLACAEEVLRRLDLHYRVITLCTGDMGFSSQKTYDIE-- 351

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                       +  P   +   F +I S +                             
Sbjct: 352 ------------VWMPGQGDGGAFREISSCSV---------------------------- 371

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHD 334
                          G   +  M A ++ +DGK  +V  +   G    R + AV+E+   
Sbjct: 372 --------------CGDFQARRMDARYRASDGKPRFVHTLNGSGTAVGRALIAVMETYQQ 417

Query: 335 GKG-IIWPDSVAPF 347
             G I  PD + P+
Sbjct: 418 ADGSIAVPDVLQPY 431


>gi|206895371|ref|YP_002247110.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206737988|gb|ACI17066.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 406

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 139/423 (32%), Gaps = 42/423 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           ++ KG+   LP        +  ++ +     G  E+  P L+ ++L+ +      D   K
Sbjct: 3   RNPKGMRDILPPETFKWRRLEILLSKAALLYGYGEIRTPILEFSELFRKGLGDESDVALK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVM 150
           EM    D+N   +   P     +      H     ++P    +     FR E RP+ G  
Sbjct: 63  EMYEFEDKNGDVLSLRPEGTAPVARAVIQHHLY--DIPVLRLFYTGPMFRRE-RPQAG-- 117

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-----PIGGD 205
           R R+F      +F ++          + +   RIF  L L         G     PI  +
Sbjct: 118 RYRQFHQFGIEAFGVSQPYMDIE---VLLVVKRIFSLLNLPLTIHINSLGCDECRPIYME 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F++ A   + ++   + F   P+   ++   +   + +   + +         H  
Sbjct: 175 QLRNFVLSAIPEDEEI---ERFKKNPLKLFDSKRPEHAEVKAEAPKISEYLCPACKDHYA 231

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTK-----YSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  +            ++   F + T+     Y    +    G    DH V        
Sbjct: 232 HVIRAAKLFGVPIVEDPQLARGFDYYTRTVFEGYVGEFNLAVVGGGRYDHLVSFYGGPDV 291

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--------QVCRDACEKIYARL 372
                A  +E                 K+ +I+ +           +   +   ++  +L
Sbjct: 292 PGIGFAIGLERLITSLE----------KVPIIDPEPKKTYFLATTGEDMIEPAFQLAEKL 341

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  +  D    ++  Q  +A+ +     +I+G +   +  + ++  +TG +  ++ E
Sbjct: 342 RDHGIGIIMDLRQGKLQKQLKLANKVEVRYVLILGEEEQRNHVITLRDMVTGEQRIVAQE 401

Query: 433 EVI 435
            V+
Sbjct: 402 AVL 404


>gi|254361093|ref|ZP_04977238.1| serine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261495418|ref|ZP_05991866.1| serine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153092579|gb|EDN73634.1| serine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261308923|gb|EEY10178.1| serine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 435

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    +LP  +      FR E     R   G++R  +
Sbjct: 231 EVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGAAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|466828|gb|AAA17103.1| hisS [Mycobacterium leprae]
          Length = 427

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 134/431 (31%), Gaps = 41/431 (9%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
            KGI  + P        V   +     R G  ++ +P  +   L+        D   KEM
Sbjct: 13  PKGIPDYFPPDSAQFVAVRDGLLTAARRRGYGDIELPVFEDTALFARGVGESTDVVAKEM 72

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              ADR D+++   P     +      H      LP         FR E RP+ G  R R
Sbjct: 73  YTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG--RCR 129

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLS 207
           +       +  +           +  +    F  LGL    +   S       P    L 
Sbjct: 130 QLQQVGVEAIGVDDPALDAEVITIADA---GFRSLGLDGFQLEITSLGDGTCRPQYRKLL 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            EF++  D  E     ++      +  +      + +   ++    +  A          
Sbjct: 187 QEFLLQLDLDEDTRRRAELNPLRVLDDKRPQVQAMTAAAPVLLDHLSDGAKQHFDTVLAH 246

Query: 268 FDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQM 314
            D+L     ++ R             E  H    G +  +     + G         +  
Sbjct: 247 LDALRVPYVINPRMVRGLDYYTKTTFEFVHPG-LGAQSGIGGGGRYDGLMRQLGGQDLSG 305

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +G+G  R + A+     +GK +        F +SL       +  +     +  +L  
Sbjct: 306 IGFGLGVDRTLLAL---HAEGKTVGETTRCDVFGVSL------GEAAKLKVAMLAGQLRA 356

Query: 375 VGCDV--FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G  V   + D G + G+    A   G  + +IV    +    V ++   TG +  ++++
Sbjct: 357 AGVRVDLIYGDRGIR-GAM-RAAGRSGARIALIVDDCAIKADGVGVRDLATGEQISVAVD 414

Query: 433 EVINYASHRFS 443
            V+     R +
Sbjct: 415 SVVAEVISRIA 425


>gi|323499821|ref|ZP_08104780.1| histidyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323315062|gb|EGA68114.1| histidyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 422

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 137/428 (32%), Gaps = 30/428 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRSCIENSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F +           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGIDGPDVDAELIMM---TARLWRELGID-KHVRLELNSIGSLDDRANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     +        D            + + N  V+         SD   E+  +  
Sbjct: 178 RTALIAFLEQHIDILDDDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKEHF 237

Query: 272 -PENKRVSARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHYVQMGSYGI 319
               + + A GIE         G  Y         +  + A      G  +   +   G 
Sbjct: 238 AGLCELLDAAGIEYTVNERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGG 297

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV- 375
            A   V   +      + ++  +++    +     + +    +    A  K+   L +  
Sbjct: 298 KATPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYMVTAGEGTMLAGMKLAELLREQV 354

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V     G     QF  AD +G  + +++G   V+D+ V +K  + G +E  S  +V
Sbjct: 355 PGLRVMNHFGGGSFKKQFKRADKVGAAVALVLGENEVADNSVVLKDLIGGTQETYSQADV 414

Query: 435 INYASHRF 442
           I   +   
Sbjct: 415 IAKLAELV 422


>gi|308187769|ref|YP_003931900.1| Histidyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308058279|gb|ADO10451.1| Histidyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 426

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 134/439 (30%), Gaps = 47/439 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  ++++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTALWQRIEGVLKQTLASYGYSEIRLPLVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M  +  R +  LG+    +R E   IG   +    
Sbjct: 122 YRQFYQIGVEVFGLQGPDIDAELI-MLNA--RWWKSLGISE-HVRLELNSIGSLEARAHY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHKDVLDEDCKRRMYSNPMRVLDSKNPDVQQLLNDAPQLGDYLDDESREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSY 317
                L D         +   RG++          Y+  +      + G +      G Y
Sbjct: 238 SGLCALLDDAGISYTVNQRLVRGLDY---------YNRTVIEWVTDSLGSQGTVCGGGRY 288

Query: 318 GIGAM----RVVAAVIESSHDGKGIIWPDSVAP-------FKISLINIKAH-DQVCRDAC 365
                    R   AV  +    + ++   +V P         + +I              
Sbjct: 289 DGLVEQLGGRATPAVGFAMGMERLVLLVQAVNPEFEPTSNVDVYVIASGQGVQSAAMQLA 348

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EK+     ++     +     +   QFA AD  G  + +++G   V   +V IK    G 
Sbjct: 349 EKLRDEAPELRLMTNFGGGNFK--KQFARADKWGARVALVLGEDEVKAGQVVIKDLRRGE 406

Query: 426 REDMSLEEVINYASHRFSN 444
           ++ +   E          +
Sbjct: 407 QQTLDQAEAAAVLRTLLQS 425


>gi|304415632|ref|ZP_07396234.1| seryl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304282511|gb|EFL91072.1| seryl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 430

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 86/251 (34%), Gaps = 21/251 (8%)

Query: 14  NPRDAEIASH-KLMLRTGMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTG 65
              D  +  H  L  R G +   +     G    +  G  A     ++  + +    + G
Sbjct: 130 RKDDCNVQDHVTLGERRGELDFAAGVKLTGTRFVVMKGAIARLHRALSQFMLDLHTEQHG 189

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSH 121
             E+ VP L +++  + +G+   +G+++       +++        PT E  +T++ R  
Sbjct: 190 YQEVYVPYLVNSNSLLGTGQLPKFGEDLFHTKPLAEESSSSNYALIPTAEVPLTNLVRGE 249

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 250 ILEGASLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEHSMEALEEL 308

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  + A     ++    +  DF   
Sbjct: 309 TKHAEKVLQLLKLPYRKVLLCTGDMGAAACKTYDLEVWLPAQKKYREISSCSNMGDFQAR 368

Query: 234 SENTDFDDIIS 244
                + D   
Sbjct: 369 RMEARYRDKQG 379


>gi|295096401|emb|CBK85491.1| seryl-tRNA synthetase [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 430

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ       +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++      +++A        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEESMDALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    M   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLELLGLPYRRMALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDF 365


>gi|187733422|ref|YP_001881305.1| histidyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|229558742|sp|B2TXT9|SYH_SHIB3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|187430414|gb|ACD09688.1| histidyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|320175077|gb|EFW50190.1| Histidyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
          Length = 424

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 130/431 (30%), Gaps = 35/431 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAP-------FKISLINIKAHDQ-VCRDACEKIYARLSK 374
           R   AV  +    + ++   +V P         I L+   A  Q       E++   L  
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPIVDIYLVASGADTQSAAMALAERLRDELQG 357

Query: 375 VGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           V             G    QFA AD  G  + V++G   V++    +K   +G +  ++ 
Sbjct: 358 VKLM-----TNHGGGNFKKQFARADKWGARVAVVLGESEVTNGTAVVKDLRSGEQTAVAQ 412

Query: 432 EEVINYASHRF 442
           + V  +     
Sbjct: 413 DSVAAHLRTLL 423


>gi|290769989|gb|ADD61756.1| putative protein [uncultured organism]
          Length = 462

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 149/449 (33%), Gaps = 64/449 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFV----QESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK--FRDELR------P 145
           +   + +++           + + +              +  +    F DE         
Sbjct: 88  MDCKECHERFRADK------LIEDWADENSYDLGGSVDGWTQEQMKNFIDEKNICCPSCG 141

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAES 199
           +      R+F +    +F    E +K++      +   IF  +  K++       +    
Sbjct: 142 KHNFTDIRQFNLM-FKTFQGVTEDAKNTVYLRPETAQGIF--VNFKNVQRTSRKKVPFGI 198

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IG    +E      T  T+ F   +   F  P  + ++        I           
Sbjct: 199 GQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFTYWRQYCIDWLKALGMKED 258

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD----- 306
                +   + L    + +   IE    F +G        T Y L    T  G D     
Sbjct: 259 EMRARDHSPEELCFYSKGTTD-IEFLFPFGWGELWGIADRTDYDLTQHQTVSGEDMSYFD 317

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINI 354
               + +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +
Sbjct: 318 DEAKEKYIPYVIEPSLGADRVTLAFLCSAYDEEELEGGDVRTVLHFHPALAPVKIGILPL 377

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +  EK+YA LSK   +  +DD G  IG ++   D +G P  +        D 
Sbjct: 378 SKK---LNEGAEKVYAELSKY-YNCEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSEEDG 432

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V ++ R T  +E + + ++  Y   +F 
Sbjct: 433 AVTVRDRDTMQQERIKIADLKAYFEDKFR 461


>gi|260655870|ref|ZP_05861339.1| serine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260629486|gb|EEX47680.1| serine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 430

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 10/216 (4%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +    + G  E +VP + S +    +G+   + +++ ++   +D  
Sbjct: 168 LGARLERAMANYMLDLHCLKQGYTEYNVPLMVSTETMTGTGQLPKFAEDLYKIGGDDDVP 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T++      S  +LP         FR E     +   G+MR  +F   +
Sbjct: 228 LWLIPTAEVPLTNLHSGETLSEDDLPMYMTAYTPCFRREAGSYGKDVRGIMRLHQFDKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 TPE S     K+      +   LGL    +   SG IG   +     E  + + 
Sbjct: 288 MVKL-CTPETSYDELEKLTADAESVLQGLGLPYRVIVLCSGDIGFGSAKTYDVEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               ++    +  DF     N  +            
Sbjct: 347 NCYREISSCSNCEDFQTRRMNCRYRPAGGGKLRYPH 382


>gi|315641701|ref|ZP_07896746.1| histidine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315482550|gb|EFU73084.1| histidine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 431

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 149/441 (33%), Gaps = 53/441 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MKYQRPKGTNDILPGESEKWQFVEETARLLFKDYQFDEIRTPLFEHIEVISRSVGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-----FTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I RS +++    P     +  Y     FR E 
Sbjct: 61  VTKEMYDFYDKGDRHITLRP---EGTAPIVRSFVENKLYGPEFPKPYKVYYTGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F       F      +      M +++   F +LG+  + +   +    
Sbjct: 117 RPQKG--RLRQFHQIGVECFGSKNPATDVEIMAMALAF---FEQLGISDLRLVINTLGDS 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P    LS +          +V  SKD  D  I +      D ++ 
Sbjct: 172 ETRVSYRQALIEYLTPFEEQLSADSKRRLHENPLRVLDSKDKKDKEIVANAPQILDYLTT 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGH-IFYFGTKYSLPMSATF 302
            S    +    A    +      DS         +    E+ H     GT+ ++     +
Sbjct: 232 ES-KTHFETVTAMLDTLGIVYEVDSNMVRGLDYYTHTIFEIMHDSDALGTQSTICAGGRY 290

Query: 303 KG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKISLINIKAHD 358
                +          +GIG  RV+  +     D +GI  P  D++  + + L      D
Sbjct: 291 DNLIEEFGGESTPGFGFGIGIERVLLTL-----DSEGIELPTIDTIDAYVVHL-----GD 340

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +   K+   +   G     D MG +  +QF  AD     L V +G   +++ +V+I
Sbjct: 341 ETNVE-ALKLVQAIRNAGFSADRDYMGRKAKAQFKSADKAKARLVVTIGDSELAEQQVKI 399

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           K+  T +     L ++ +  +
Sbjct: 400 KNMATRVEATYPLAKIYDEFA 420


>gi|312888874|ref|ZP_07748436.1| glycyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311298615|gb|EFQ75722.1| glycyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 493

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 70/482 (14%), Positives = 156/482 (32%), Gaps = 82/482 (17%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV-- 71
           + SH      G + Q S        +Y +   G +  +N+     +   +     + +  
Sbjct: 12  VISHAK--EYGFVFQSSEIYDGLSAVYDYGQNGAELKNNIKTYWWKAMVQMHENIVGIDS 69

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE-------EVMTDI------- 117
                  +W  SG  D +   M+   D   +        E       E  TD+       
Sbjct: 70  AIFMHPKIWKASGHVDGFNDPMIDNKDSKKRYRADQLIEERIALYDTEGKTDLAEKLQHD 129

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK- 176
               +KS          I+   +  +         R+F +  +  F    EGS+  Y + 
Sbjct: 130 MDEALKSDDLGRLREIIIEHGIKCPISGTANWTEVRQFNLMFSTQFGAMAEGSEEIYLRP 189

Query: 177 -----MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                +FV++L +    R+ +     +     IG    +E I        + F   +   
Sbjct: 190 ETAQGIFVNFLNVQKSGRMKIPFGIAQ-----IGKAFRNEVIARQFIIRMREFEQMEMQF 244

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           F  P    ++ +      +              +++    +       +   +++ + F 
Sbjct: 245 FIRPGTEMEWYEYWKAARLKWHVALGTDPAKYQYHDHAKLAH-----YANAAVDIEYEFP 299

Query: 290 FG----------TKYSLP------------MSATFKGADGKD---HYVQMGSYGIGAMRV 324
           FG          T + L                      GK    +   +    IG  R+
Sbjct: 300 FGFKEVEGIHSRTDFDLSQHQKFSNKKMQYFDPEVDPETGKPYGNYIPYVIETSIGLDRM 359

Query: 325 VAAVIESSHDGKG------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               + ++++ +             +  P  +AP K ++  +   D    +   +I  +L
Sbjct: 360 FLLTMINAYEEEDLSTEERQDSRTVLRLPAVLAPVKAAIFPLTKKD-GLPEKAREIMDKL 418

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K+  +V +++    IG ++   D +G P+ + V  + + D+ V I+HR +  +E +  +
Sbjct: 419 -KLEYNVQYEEKDA-IGKRYRRQDAIGTPICITVDHQSLEDNTVTIRHRDSMAQERVPAD 476

Query: 433 EV 434
           ++
Sbjct: 477 DL 478


>gi|254508478|ref|ZP_05120597.1| seryl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219548590|gb|EED25596.1| seryl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 435

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGGGLDFASATKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYSE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +GK++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLEEKVNDEEPRKLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ISDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMDALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|254291533|ref|ZP_04962324.1| seryl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|150422597|gb|EDN14553.1| seryl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 435

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +   ++ G  E
Sbjct: 135 DFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQFARLHRAIAQFMLDLHTDKHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           + VP L +A+    +G+   +G+++           D   + +   PT E  +T++ R  
Sbjct: 195 LYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|315123115|ref|YP_004065121.1| histidyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315016875|gb|ADT70212.1| histidyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 426

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 141/440 (32%), Gaps = 48/440 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +    V  I+RE  +  G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAVRGMNDCLPGDTQVWQKVEHILRETVSSFGYQEIRFPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRN   +   P    V       +   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADRNGDNLTLRPEGTAVCVRAGNENGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F      +F +           + +   +++   G+    +R E   +G + +    
Sbjct: 122 YRQFHQFGLETFGIASADIDAE---VILLTAQLWEAFGISD-HVRLELNSLGSNEARAQY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     + +     +    
Sbjct: 178 RDALIAFLEQHTDVLDEDSKRRMYSNPLRVLDTKNPDIQAILVDAPKLSEHLDTESKEHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
            +  +  D+            RG++     +F       G + ++     + G      G
Sbjct: 238 ENLCERLDAAGVKYTVNEKLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K       + G+  + ++   +E   D +            + L  +     +       
Sbjct: 298 KSTPAVGFAMGLERLVLLLQALECVGDIRRS--------TDVYLAAMGDKASIQ---API 346

Query: 368 IYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG 424
           I + L +   G  V     G     Q   AD     + VI+G   +    V IK+ R   
Sbjct: 347 IASTLRRDVPGLRVMVHAGGGNFKKQLKRADKSDALVAVIIGEDELEQGVVTIKYLRERK 406

Query: 425 IREDMSLEEVINYASHRFSN 444
            +  + LE+     +   ++
Sbjct: 407 EQVTLELEQAKALLAELINS 426


>gi|262305761|gb|ACY45473.1| glu- + pro-tRNA synthetase [Lynceus sp. 'Lyn']
          Length = 134

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      ++  + ++       S+G+   R +  +I    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVYEDPETQEKKFVFQNSWGLT-TRTIGVMIMVHSDNQ 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHDQVCR-DACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++       +   D+     ACE+    L  V   V  D       
Sbjct: 74  GLVLPPHVACIQVVIVPCGITASLSTEDKAALIKACEEYEKLLKAVDVRVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|321441345|gb|ADW85087.1| glu- + pro-tRNA synthetase [Urodus decens]
          Length = 134

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   D  +  +V   S+G+   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSRMFDIVYDDPDTQEKKHVFQNSWGLT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++         +   +   DAC+++   L + G     D       
Sbjct: 74  GLVLPPRVAAVQTIVVPCGITASSTQEERKALIDACKQLVDELVQAGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|319900290|ref|YP_004160018.1| glycyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319415321|gb|ADV42432.1| glycyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 513

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 120/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTSDGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      +     + L+    LG      R           H+  
Sbjct: 261 MREFEQMEMQ-FFVKPGTELEWFKTWKATRLKWHKALGFGDDHYR----------YHDHD 309

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            LA                             +   I       +     +H+   FD  
Sbjct: 310 KLA-------------------------HYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKNIKYFDPETNESYTPFVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 SYCEETLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDDL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADRV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|157813078|gb|ABV81284.1| putative bifunctional aminoacyl-tRNA synthetase [Cydia pomonella]
          Length = 134

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   D  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPDTQEKKYVFQNSWGLT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++             Q   D C K+   L   G     D       
Sbjct: 74  GLVLPPRVADIQVIVVPCGITASTSNEDRQKLMDECSKLVGELVAAGIKSEGDFRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|153802126|ref|ZP_01956712.1| seryl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124122319|gb|EAY41062.1| seryl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 435

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +   ++ G  E
Sbjct: 135 DFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQFARLHRAIAQFMLDLHTDQHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           + VP L +A+    +G+   +G+++           D   + +   PT E  +T++ R  
Sbjct: 195 LYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ILDETELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|297528389|ref|YP_003669664.1| seryl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297251641|gb|ADI25087.1| seryl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 424

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + ++   L 
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYEEVLPPYLVNRASMIGTGQLPKFAEDAFHL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             + +     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 222 --DSEDYFLIPTAEVPVTNLHRDEILAADDLPIYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+      I  RLGL    +   +G +G   +  + + 
Sbjct: 280 QFNKVELVKF-VKPEDSYDELEKLTRQAETILQRLGLPYRVVALCTGDLGFSAAKTYDIE 338


>gi|296162244|ref|ZP_06845039.1| seryl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295887511|gb|EFG67334.1| seryl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 431

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 73/228 (32%), Gaps = 15/228 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G  E+  P + + ++   +G+   +  +M
Sbjct: 157 SGARFTMLRGQIARLHRALAQFMIDTHTQHHGYTEIYTPYIVNPEILYGTGQLPKFADDM 216

Query: 94  LRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPR 146
            R+    D N        T E  +T+  R  I     LP         FR E     R  
Sbjct: 217 FRVERGGDENTVTQYLISTSEISLTNTVRDSIVEADALPIKLTAHSPCFRSEAGSYGRDT 276

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G++R  +F   +       PE S  +  +M      I  +L L    +   +G +G   
Sbjct: 277 RGLIRQHQFDKVEMVQIVA-PETSYDALEQMVGHAETILQKLELPYRVITLCTGDMGFSA 335

Query: 207 SH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +     E  V A     ++    +   F        + +      +V 
Sbjct: 336 AKTYDLEVWVPAQNTYREISSCSNTESFQARRMQARYRNAQGKPELVH 383


>gi|296103101|ref|YP_003613247.1| seryl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057560|gb|ADF62298.1| seryl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 430

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ       +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++      +++A        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEESMDALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    M   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLELLGLPYRRMALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDF 365


>gi|183598338|ref|ZP_02959831.1| hypothetical protein PROSTU_01730 [Providencia stuartii ATCC 25827]
 gi|188020514|gb|EDU58554.1| hypothetical protein PROSTU_01730 [Providencia stuartii ATCC 25827]
          Length = 429

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 20/242 (8%)

Query: 17  DAEIASHKLM--LRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +  L  G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEIKDHVSLGELAGGLDFPAAVKLTGARFVVMKGQIARLHRALAQFMLDLHTEQHGYQE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDIFRSHIKSY 125
           + VP L + D    +G+   +G+++       ++A       PT E  +T++ R  I   
Sbjct: 193 LYVPYLVNHDTLYGTGQLPKFGEDLFHTKPLEEEAESTYALIPTAEVPVTNLVRDEILDE 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP         FR E     R   G++R  +F   +     + PE S  +  ++    
Sbjct: 253 DALPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VHPEKSMEALEELTGHA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            ++   L L    +   +G IG         E  + A     ++    +  DF       
Sbjct: 312 EKVLQLLKLPYRKVILCTGDIGFGSRKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQA 371

Query: 238 DF 239
            F
Sbjct: 372 RF 373


>gi|261345333|ref|ZP_05972977.1| histidine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282566374|gb|EFB71909.1| histidine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 420

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 134/422 (31%), Gaps = 40/422 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP   +    + A ++      G  E+  P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTRVWQKIEATLKNILQGYGFSEIRTPIVEQTPLFRRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN++++   P +          H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFNDRNEESLTLRPENTAGCVRAGIEHGLLYNQE-QRLWYLGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLAGPDIDAEVILM---TARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D      +     + S N  +        A    + +E     
Sbjct: 178 RDALVAFLEQHKDKLDEDCKRRMYSNPLRVLDSKNKDVQALLNDAPALFDYLDDESREHF 237

Query: 271 LPENKRVSARGIE--VGHIFYFGTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM-- 322
               K +   GI+  V      G  Y          T  G+ G       G Y       
Sbjct: 238 DGLCKLLDNAGIQYRVNQRLVRGLDYYNRTVFEWVTTALGSQGT--VCAGGRYDGLVEQL 295

Query: 323 --RVVAAVIESSHDGKGIIWPDSVAP--------FKISLINIKAHD-QVCRDACEKIYAR 371
             R   AV  +    + ++    V P          + L +   +  Q      EK+   
Sbjct: 296 GGRATPAVGFAMGMERMVLLVQEVNPEFTADNSVADVYLASFGDNSQQAALLVAEKVRDA 355

Query: 372 LSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           L  +             G    Q A AD  G  L +I+G   + +S+V +K   TG +E 
Sbjct: 356 LPTLRLM-----TNHGGGNFKKQLARADKQGAKLALILGEDEIQNSQVTLKDLRTGTQET 410

Query: 429 MS 430
           +S
Sbjct: 411 IS 412


>gi|261493580|ref|ZP_05990100.1| serine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261310762|gb|EEY11945.1| serine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 435

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    +LP  +      FR E     R   G++R  +
Sbjct: 231 EVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGAAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|325123239|gb|ADY82762.1| seryl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 423

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGSLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDTERL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 310 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 368


>gi|222148967|ref|YP_002549924.1| seryl-tRNA synthetase [Agrobacterium vitis S4]
 gi|254782999|sp|B9JXD8|SYS_AGRVS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|221735953|gb|ACM36916.1| seryl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 427

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 14/210 (6%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +   +    +G+   + +E+ +  D         PT
Sbjct: 176 RALGQFMIDLHTSEHGYTEVSSPLMVRDEAMYGTGQLPKFSEELFKTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVSGEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             + +   + +M      +  RLGL    M   +G +G   +     E  +       ++
Sbjct: 291 DAQSALAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGAAKTYDLEVWLPGQNTFREI 350

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  DF     N  + +     +    
Sbjct: 351 SSCSVCGDFQGRRMNARYRNKDGKGTTFVH 380


>gi|49474113|ref|YP_032155.1| seryl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|67461757|sp|Q6G036|SYS_BARQU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|49239617|emb|CAF25976.1| Seryl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 425

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   +  G  E+SVP L   ++   + +   +  ++ R  D          T
Sbjct: 176 RALGQFMLDVHVDEHGYTEVSVPLLVRDEIVYGAAQLPKFADDLFRTTD----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++  + I    +LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLTNLVNNEILEISDLPLRFSSLTPCFRSEAGSAGRDTRGMLRQHQFWKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           T E S     +M      +  RLGL    +   +G +G
Sbjct: 291 TEEQSLMELERMTECAEDVLKRLGLPFRTVVLSTGDMG 328


>gi|317120858|ref|YP_004100861.1| seryl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315590838|gb|ADU50134.1| seryl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 425

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 17/224 (7%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G + +  +   + +      G  E+  P L      V +G+   + ++  R+AD +    
Sbjct: 170 GARLVRALIQFMLDLHTQEHGYTEVLPPFLVHRQSMVGTGQLPKFEEDAFRVADSD---F 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I     LP         FR E     R   G++R  +F   + 
Sbjct: 227 FLVPTAEVPVTNLYRDEILDGAQLPIYHVAYTPCFRAEAGSAGRDTRGLIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F + P+ S   + K+      +  RLGL    +   +G +G          A   + +
Sbjct: 287 VKF-VHPDRSAEEHEKLVADAEAVLQRLGLPYRLVLICTGDMG-------FAQAKQYDLE 338

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           V+         I S + ++ D  +  + +     P A    VH 
Sbjct: 339 VWMPSYGRYVEISSCS-NYRDYQARRANIRFRPEPGARPQFVHT 381


>gi|295676902|ref|YP_003605426.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436745|gb|ADG15915.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 446

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 136/442 (30%), Gaps = 59/442 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRASIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSH--EF 210
           +F      +       +      M     R++  LGL  I +   S G      +H  E 
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIIMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 211 IVLADT-----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           I   +       E             + ++N    ++      +  +    +       +
Sbjct: 188 IAYLEKHMDVLDEDAKRRLYTNPLRVLDTKNPALQEVAQNAPKLIDFLGEESRAHFEGLQ 247

Query: 266 KLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHYVQ 313
           +L  +            RG++     +F       G + ++     +             
Sbjct: 248 RLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTA 307

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
              + +G  R++  + E             + P      +  +   D   R+    I  R
Sbjct: 308 ACGWAMGIERILELLKEE-----------QLVPEDEGCDVYVVHQGD-AAREQAFIIAER 355

Query: 372 LSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT- 423
           L   G DV      D  G+    +     AD  G    V++G   +++  V +K  R T 
Sbjct: 356 LRDTGLDVILHCSAD--GQSASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTQ 413

Query: 424 -----GIREDMSLEEVINYASH 440
                  ++++  E++  Y  +
Sbjct: 414 AHGGKNEQQNVPAEDLTEYLIN 435


>gi|255975491|ref|ZP_05426077.1| histidyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256961540|ref|ZP_05565711.1| histidyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|257079351|ref|ZP_05573712.1| histidyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|257090253|ref|ZP_05584614.1| histidyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|293384700|ref|ZP_06630555.1| histidine--tRNA ligase [Enterococcus faecalis R712]
 gi|293387400|ref|ZP_06631955.1| histidine--tRNA ligase [Enterococcus faecalis S613]
 gi|294779747|ref|ZP_06745134.1| histidine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|307268142|ref|ZP_07549529.1| histidyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307277693|ref|ZP_07558779.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312902750|ref|ZP_07761954.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|312908314|ref|ZP_07767278.1| histidyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312910612|ref|ZP_07769454.1| histidyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|255968363|gb|EET98985.1| histidyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256952036|gb|EEU68668.1| histidyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256987381|gb|EEU74683.1| histidyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256999065|gb|EEU85585.1| histidyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|291078007|gb|EFE15371.1| histidine--tRNA ligase [Enterococcus faecalis R712]
 gi|291083191|gb|EFE20154.1| histidine--tRNA ligase [Enterococcus faecalis S613]
 gi|294453121|gb|EFG21536.1| histidine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|295113236|emb|CBL31873.1| histidyl-tRNA synthetase [Enterococcus sp. 7L76]
 gi|306505572|gb|EFM74756.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306515532|gb|EFM84060.1| histidyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310625728|gb|EFQ09011.1| histidyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|310633804|gb|EFQ17087.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|311289160|gb|EFQ67716.1| histidyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|315161367|gb|EFU05384.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315576681|gb|EFU88872.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0630]
 gi|323481107|gb|ADX80546.1| histidyl-tRNA synthetase [Enterococcus faecalis 62]
 gi|329568729|gb|EGG50529.1| histidine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 433

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 140/435 (32%), Gaps = 51/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +E     D +  
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYL-N 230

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVG-HIFYFGTKYSLPMSATF 302
                 + A       +      DS         +    E+       G + ++     +
Sbjct: 231 EPSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRY 290

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G     G       G +G+G  RV   ++    +   I    +++     ++ I +   
Sbjct: 291 NGLVEELGGPDTPGFG-FGMGIERV---LLTMEAEEVVI---PALSELDAYVVGIGSETN 343

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +   A  ++   +   G     D M  +  +QF  AD L   L + +G   +++  V +K
Sbjct: 344 I---AALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVK 400

Query: 420 HRLTGIREDMSLEEV 434
              T   +   L  +
Sbjct: 401 SMATREEKAFPLSAI 415


>gi|78223120|ref|YP_384867.1| histidyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|123742840|sp|Q39UD2|SYH_GEOMG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78194375|gb|ABB32142.1| histidyl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 413

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 138/421 (32%), Gaps = 47/421 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP   +   ++ A  R      G  E+ VP L+  +L+  S     D   KEM 
Sbjct: 6   KGFNDILPGEVERWQHIEATARRVFGLYGYAEIRVPILEKTELFCRSIGDTTDIVEKEMY 65

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ + A+   P     +   +  H    ++     Y +   FR E RP+ G  R R+
Sbjct: 66  SFVDKGENAVTMRPEGTASVMRAYIEHKLYAQDPVAKLYYMGPMFRYE-RPQKG--RYRQ 122

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F    A    +T          M       F  LGL    ++  S       P+  +   
Sbjct: 123 FHQIGAEVTGVTDPKVDAQVLTML---CHFFAELGLTEPTLQINSLGCPECRPVYREALK 179

Query: 209 EF------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            F       +  D            +D           D  ++   +      + A +  
Sbjct: 180 SFLRERLDRLCDDCKRRYETNPLRALDCKSAHCKEATADAPAMLDHLCAGCDDHFAATRR 239

Query: 263 HNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFK----GADGKDHY 311
           H E+       N R+  RG++              G + ++     +       DG    
Sbjct: 240 HLERAGTPYSINNRM-VRGLDYYTRTTFELVTGLLGAQSAVAAGGRYDGLIADLDGPAVP 298

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                + +G  RV   + +     +    PD         + I A     +D   ++   
Sbjct: 299 GI--GFAMGVERVALLLGQQEFARR----PD---------LFIAALGTEAQDEAFRLMCG 343

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L ++G  V  D  G+ + SQ   +D       +I+GS  ++  +  +K   TG + D+ L
Sbjct: 344 LQRLGVSVEMDYEGKSLKSQMRRSDKFNSRFTLIIGSDEMASGRATLKAMDTGTQSDVLL 403

Query: 432 E 432
           +
Sbjct: 404 D 404


>gi|169806666|ref|XP_001828077.1| glycyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|161779205|gb|EDQ31229.1| glycyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 625

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/397 (13%), Positives = 127/397 (31%), Gaps = 56/397 (14%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ND   +     + +  +  + +  +   +PF  Y I   +R+E+  R G++R++EF   +
Sbjct: 220 NDHQYMRPELAQGIFINFKKGYDFNNGQMPFAIYSIGKSYRNEISARGGMLRTKEFYQAE 279

Query: 160 AYSFDLT-----------------PEGSKHSY---------------NKMFVSYLRIFHR 187
              F                    P  S+ S+                 M V   R +  
Sbjct: 280 IEYFTEDKTHKDFSNIADIELVLLPNSSESSFTLSLRAALNQNIISSEAMCVFLARGY-- 337

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           L L  I +  ++        +E    A D  + ++     +++    ++ +++ D+    
Sbjct: 338 LFLIDIGIYPQTIRCRQHRCNEMAHYAHDCWDIEILTITGWVECIGIADRSNY-DLTVHA 396

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY--------FGTKYSLPM 298
             +  +             ++            + IE                  Y +  
Sbjct: 397 KNINSYVKKKIQPIRTKKLEIIKKHIIKDLKEEKYIEFEQYVQSIPVDNYKNKVNYDVTF 456

Query: 299 SATFKG-------ADGKDHYVQMGSYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPF 347
           +             +  ++   +     G  R++ A+IE +     +   +     +   
Sbjct: 457 NGKVYNLRVIDKIIEHVEYIPTVIEPSFGISRILYALIEQNLLFYTNRTVLALKPKLCFK 516

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            +S+  +  ++ +      K+     K       +     IG ++  +D +G P  + V 
Sbjct: 517 HVSITTL-INNTITDKYLNKLENDAIKSNIRYQINRRNVSIGKKYFSSDEIGIPFFITVD 575

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           S+   +  V I+ R T  +  + +E+ IN   +  + 
Sbjct: 576 SETNINQTVTIRDRNTMSQIRVQIEDAINIVVNLINE 612


>gi|59801685|ref|YP_208397.1| seryl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|240014583|ref|ZP_04721496.1| seryl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240121105|ref|ZP_04734067.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
 gi|240123934|ref|ZP_04736890.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|254494125|ref|ZP_05107296.1| seryl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268682559|ref|ZP_06149421.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|67461600|sp|Q5F752|SYS_NEIG1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|59718580|gb|AAW89985.1| putative seryl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|226513165|gb|EEH62510.1| seryl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268622843|gb|EEZ55243.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 431

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 78/252 (30%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAII-REEQNRTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   +      + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHMLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVAGSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYGALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|56418548|ref|YP_145866.1| seryl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|67461631|sp|Q5L3Y0|SYS_GEOKA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56378390|dbj|BAD74298.1| seryl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 424

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + ++   L 
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYEEVLPPYLVNRASMIGTGQLPKFAEDAFHL- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             + +     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 222 --DSEDYFLIPTAEVPVTNLHRDEILAADDLPIYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+      I  RLGL    +   +G +G   +  + + 
Sbjct: 280 QFNKVELVKF-VKPEDSYDELEKLTRQAETILQRLGLPYRVVALCTGDLGFSAAKTYDIE 338


>gi|325144922|gb|EGC67206.1| seryl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325205599|gb|ADZ01052.1| seryl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 431

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRLKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385


>gi|24217038|ref|NP_714519.1| seryl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659295|ref|YP_003381.1| seryl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|30173162|sp|Q8EY78|SYS_LEPIN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|59798552|sp|Q72LS1|SYS_LEPIC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|24198447|gb|AAN51537.1| seryl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602541|gb|AAS72018.1| seryl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 417

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 9/173 (5%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           Y++   G +    +   + +         E+ VP++ + +  + +G+Y  +  E  R+  
Sbjct: 165 YTYWKDGARLERALMNFMLDVHTKEHDYTEVWVPSMVNDESMMATGQYPKFKDEFYRI-- 222

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            +   +   PT E  +T+++R  I     LP +       FR E     +   G++R  +
Sbjct: 223 -DKDELNLIPTAEVPLTNLYRDEIIPEDQLPISVTAHTSCFRREAGSYGKDTRGLVRVHQ 281

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           F   +   F   PE S+  + KM      I  +L L    +   SG I  + S
Sbjct: 282 FQKVELVKF-CKPEDSEEEHKKMLSHAENILKKLELPYRVIILCSGDISANSS 333


>gi|227874941|ref|ZP_03993092.1| glycine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|227844461|gb|EEJ54619.1| glycine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
          Length = 485

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 73/488 (14%), Positives = 157/488 (32%), Gaps = 72/488 (14%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +RS      L++    A+      +   G I+  ++  + + PLG +  +N+        
Sbjct: 20  KRSSPVASTLEQVISLAKRRG--FVYPCGEIYGGTRAAWDYGPLGVELKENIKKAWWNYM 77

Query: 62  NRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R+    + +    +    +W  SG   ++   ++     + +        E+ + + + 
Sbjct: 78  VRSREDVVGLDSSVILPPKVWEASGHLKAFTDPLIECTSCHKRYR------EDDLQEKYA 131

Query: 120 SHIKSYRNLPFTFYQIQLKFRD------ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKH 172
                          +  +         E R   G++++    + D      L PE ++ 
Sbjct: 132 EKHGIDNPDTVDMAVVACENCGVKGQWTEPRAFSGLLKTYLGPVDDESGLHFLRPETAQG 191

Query: 173 SYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
            +            R   G+         G IG    +E         T+ F   +   F
Sbjct: 192 IFINFANVMNSARMRPPFGI---------GQIGKSFRNEITPGNFIFRTREFEQMELEFF 242

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIF 288
             P  + ++      +         Y       +   F   P+ K    S R +++ + F
Sbjct: 243 VEPGTDEEWHQYWIDHRFAW-----YTDLGISADNLRFYEHPKEKLSHYSKRTVDIEYAF 297

Query: 289 YFG-------------TKYSLPMSAT-------FKGADGKDHY-VQMGSYGIGAMRVVAA 327
            F              T Y L + A        +      + +   +     G  R + A
Sbjct: 298 GFEGSKWGELEGIANRTDYDLSVHAEASGQKLDYYDQAKDERWVPYVIEPSAGLTRSLMA 357

Query: 328 VIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +  ++                 +     +AP K+++  + +  +   D    I A L K
Sbjct: 358 FLIEAYTEDEAPNTKGGVDKRTVLRLDPRLAPVKVAVFPL-SKKETLPDLARGIAADLRK 416

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +V +DD G  +G ++   D +G P  V V    VSD  V ++ R +  +E + +E +
Sbjct: 417 FW-NVDYDDAGA-VGRRYRRQDEIGTPYCVTVDFDSVSDHAVTVRERDSMTQERIPMEGL 474

Query: 435 INYASHRF 442
           + Y   + 
Sbjct: 475 VAYLRDKL 482


>gi|206890029|ref|YP_002247872.1| seryl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|238065108|sp|B5YGU2|SYS_THEYD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|206741967|gb|ACI21024.1| seryl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 424

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 8/163 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G +    +   + +   + G IE+  P L +      +G+   + +++ ++ D      
Sbjct: 171 MGARLERALINFMLDLHTQKGYIEVLPPILVNKVSMTGTGQLPKFEEDLFKIVDP---EF 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I S   LP  +      FR E     +   G++R  +F   + 
Sbjct: 228 YLIPTAEVPVTNIHREEILSEDELPIYYVSYTPCFRKEAGSHGKDVRGLIRQHQFNKVEL 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             F + PE S      +      +   LGL    +   +G +G
Sbjct: 288 VKF-VKPEDSYEELESLTRDAEEVLKMLGLPYRVVALCTGDLG 329


>gi|34762826|ref|ZP_00143812.1| Histidyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|294784988|ref|ZP_06750276.1| histidine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|27887528|gb|EAA24612.1| Histidyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|294486702|gb|EFG34064.1| histidine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 413

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 130/415 (31%), Gaps = 53/415 (12%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++         +  P  +  +L+    G   D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYNYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASLVRCYLENAIYAKEDISRFYYNGSMFRYE-RPQAG--RQREFNQIGIEVFGEKSPKV 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--------------LSHEFIVLADT 216
                 +     +   +LG+  + ++  S  +G +               SH   +  D 
Sbjct: 141 DAEVIAIG---YKFLEKLGITDLEVKINS--VGSNASRTVYREKLVEHFKSHLDDMCDDC 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +         +D  +  ++ DF                           +F        
Sbjct: 196 KDRINRNPLRLLDCKV-DKDKDFYKSAPNIIDFLFEDERKHYEDVKKYLDVFGIKYTEDP 254

Query: 277 VSARGIEVG--HIF-----YFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVA 326
              RG++     +F       G++ ++     +       G      +G +  G  R++ 
Sbjct: 255 TLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVG-FATGVERIMM 313

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++  ++                  + I    +   +   KI   L      V+ D   +
Sbjct: 314 -LLGENYPKNNP------------DVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEK 360

Query: 387 QIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G +     AD L     +I+G   ++   V +K   T  ++++ +EE++NY  
Sbjct: 361 --GMKSHMKKADKLSVRYCIILGEDELNKGIVLLKDFSTREQKEVKIEEILNYIK 413


>gi|291280329|ref|YP_003497164.1| seryl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290755031|dbj|BAI81408.1| seryl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 425

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 8/172 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G K    +   + + Q+  G  E+  P L +      +G+   + +E+ +    N   + 
Sbjct: 170 GAKLERALINFMLDVQSENGYQEIIPPFLVNEKTMTGTGQLPKFEEELFKCERDN---LY 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I+   I S  +LP         FR E     +   G++R  +F   +  
Sbjct: 227 LIPTAEVPVTNIYADEILSEDDLPLYMTAYTPCFRREAGSHGKDVRGLIRQHQFNKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              + PE S     K+ +   +I   L +    M   SG +G   +  + + 
Sbjct: 287 KI-VKPEDSDEELEKLLLDAEKILQLLEIPYRVMTLCSGDLGFSAAKTYDIE 337


>gi|254671651|emb|CBA09379.1| Seryl-tRNA synthetase [Neisseria meningitidis alpha153]
          Length = 291

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDK 102
            +    +   + +    + G  E   P +        +G+   + +++  +    D +  
Sbjct: 31  ARLHRALAQFMLDTHTLKHGYTEHYTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKT 90

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                PT E  +T+     I     LP         FR E     +   G++R  +F   
Sbjct: 91  TQYLIPTAEVTLTNTVAGSIIPSEQLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKV 150

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +     + PE S  +  +M      I   L L    +   +G +G   +     E  V A
Sbjct: 151 EMVQI-VHPEKSYETLEEMVGHAENILKALELPYRVITLCTGDMGFGATKTYDLEVWVPA 209

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +  DF        F D    N +V 
Sbjct: 210 QNTYREISSCSNCEDFQARRMKARFKDENGKNRLVH 245



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 230 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 281


>gi|159027044|emb|CAO89230.1| hisS [Microcystis aeruginosa PCC 7806]
          Length = 426

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 131/436 (30%), Gaps = 38/436 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G    LP        +              E+  P  +   L+    G   D  GK
Sbjct: 5   QAIRGTKDILPAEVGYWQWLEETASRILGTALYQEIRTPIFEQTQLFERGIGEATDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR  +++   P     +   +  H           +     FR E RP+ G  R
Sbjct: 65  EMYTFLDRGQRSLTLRPEGTAGVVRAYIEHKLQAAGGVQRLWYKGPMFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +      +      I   +GL+++ +   S     D  +   
Sbjct: 122 QRQFHQIGVELLGTDDPRADVE---VITLASEILKAVGLENLKLDLNSLGNAQDRQNYRQ 178

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DS 270
            L D      + +    D    S+     + + +    ++ T      +    E L  DS
Sbjct: 179 ALLD------YLTPYKADLDADSQQRLEKNPLRILDSKDEKTKIICENAPSILEHLGSDS 232

Query: 271 LPENKRVSARGIEVGHIFYF------GTKY---------SLPMSATFKGADGKDHYVQMG 315
               +RV +   ++G I+        G  Y         S  + A      G  +   + 
Sbjct: 233 QKHFERVQSLLTDLGVIYNLNPSLVRGLDYYTHTAFEIQSDDLGAQATVCGGGRYDGLIA 292

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             G      V   I      + II         F +    + +  +        +  +L 
Sbjct: 293 QLGGPDTPAVGWAIGL---ERLIILLQQKQSLSFLVPDFYLVSKGEKAEARSVVLAQQLR 349

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G  V  D  G   G QF  AD       +I+G     +  V++K   T  +  ++  +
Sbjct: 350 GLGFSVELDLSGSAFGKQFKRADRAKAVGCIILGDAEAENGTVQLKWMATQEQISLTQAD 409

Query: 434 VIN---YASHRFSNNR 446
           ++        + S ++
Sbjct: 410 LLTQARELKAQISRHK 425


>gi|91977257|ref|YP_569916.1| seryl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|123735378|sp|Q136H4|SYS_RHOPS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|91683713|gb|ABE40015.1| seryl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
          Length = 434

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 92/292 (31%), Gaps = 65/292 (22%)

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  E++ P L   D    + +   +  +           +     PT E  +T++ R  
Sbjct: 190 HGYTEVNPPLLVKDDAMFGTAQLPKFRDDQFAAGAIGSGGEGYWLIPTAEVSLTNLVRES 249

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I   + LP     +   FR E     R   G++R  +F   +  S   TPE SK  + +M
Sbjct: 250 ILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI-TTPEKSKDEHERM 308

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +  RLGL    M   +G +G      + +               +  P   E  
Sbjct: 309 LSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIE--------------VWMPGQGEGG 354

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            + +I S +                                            G   +  
Sbjct: 355 AYREISSCSV------------------------------------------CGDFQARR 372

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A  +G DGK  +V  +   G    R + AVIE+     G I  PD + P+
Sbjct: 373 MDARSRGPDGKPRFVHTLNGSGTAVGRALIAVIENYQQEDGSIAVPDVLLPY 424


>gi|257065307|ref|YP_003144979.1| seryl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
 gi|256792960|gb|ACV23630.1| seryl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
          Length = 428

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P + + +    +G+   + +++        + +
Sbjct: 170 LGARLERALINFMADTHGSRGYKEWWCPVMANGNTLYGTGQLPKFEEDLFHTT----EGL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +     LP  +      FR+E     R   G++R  +F   + 
Sbjct: 226 YLIPTAEVQLTNIHAGDVLEASQLPLKYCGYTACFREEAGSAGRDTRGLIRVHQFDKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F  TPE   +    M      I   LGL    +   +G +G   +     E  + +  
Sbjct: 286 VKF-ATPEDGFNQLELMVEDAENILQLLGLPYRVISLCTGDLGFSAAKTYDLEVWLPSYD 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              ++       DF     N  + D          +
Sbjct: 345 AYKEISSCSCCTDFQARRANIRYRDPNKFKGTRYVY 380


>gi|237738388|ref|ZP_04568869.1| seryl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420268|gb|EEO35315.1| seryl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 423

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 14/222 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  E   P +   ++   +G+   +  +M R  
Sbjct: 162 FVLYRGLGARVERALINFMLDLHTLEHGYTEHITPFMVKREICEGTGQLPKFEDDMYRTT 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     M    T E  MT+I R  I   + LP  +      FR E     +   G++R  
Sbjct: 222 D----DMFLISTSEITMTNIHRKEILDEKELPKYYTAYSPCFRREAGSYGKDVKGIIRLH 277

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +        E S     KM  +   +  RL L    ++  +G +G   +     E
Sbjct: 278 QFNKVEMVKI-TNQESSYDELEKMVNNAEEVLQRLELPYRVIQLCTGDLGFGAAKTYDIE 336

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             + +     ++    +   F        +    S  S    
Sbjct: 337 VWLPSQKKYREISSCSNCEGFQARRMGLKYRPNGSSKSEYCH 378


>gi|193213437|ref|YP_001999390.1| histidyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|229558644|sp|B3QQI7|SYH_CHLP8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|193086914|gb|ACF12190.1| histidyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 430

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 144/442 (32%), Gaps = 50/442 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG     P        V  +IR      G  E+  P  +  +L+        D  GK
Sbjct: 5   QAVKGTRDIFPDEIARWHYVEGVIRSVAELYGFSEVRTPVFEYTELFQRGIGATTDIVGK 64

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM     D N +++   P     +           ++     Y I   FR E RP+ G  
Sbjct: 65  EMFTFQPDPNGRSLTLRPEMTAGVMRACLQKNLLSQSPVSKLYYISDLFRKE-RPQAG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R+F    A    ++   +      +    +++F  LGL  + +R  S     D +   
Sbjct: 122 RQRQFTQFGAELLGVSNPAAVAE---VLTFMMQVFSSLGLHGLRLRINSLGDLDDRARYR 178

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD-----IISLNSIVEQWTAPYAATSDVHNE 265
             L D      +      D   PS+     +          ++ E         + +  E
Sbjct: 179 EALRD------YFMPYQNDLDEPSKERLEKNPLRILDSKNPALQEMIAGAPRLYASLKPE 232

Query: 266 KLFDSLPENKRVSARGI--EVGHIFYFGTKY---------SLPMSAT--------FKG-- 304
            + D       +  R I  +V H+   G  Y         S  + A         + G  
Sbjct: 233 SVADFEKVLSYLDDRQIAYDVDHLLVRGLDYYCHAAFEVTSSELGAQDAIGGGGRYDGLA 292

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G  + +    + +G  R++ A+     + +G+    ++ P    L+ +    +   D
Sbjct: 293 RELGASNDLPAVGFAVGMERLMIAM-----EKQGLF--ATLNP-HGPLVYVVVQQKELTD 344

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  RL K G     D  G  + +Q   A+ +G    + +G   +      +K+  T
Sbjct: 345 HAMQVAFRLRKSGLKTEIDLAGRSMKAQMRDANRMGAAYALFIGQSEMESGHYALKNLET 404

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +  + L+ +I       S  
Sbjct: 405 SEQTSLDLDAIIEVLHEAVSQE 426


>gi|123966593|ref|YP_001011674.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|166222763|sp|A2BXQ6|SYS_PROM5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123200959|gb|ABM72567.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 425

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +  +  G +E+  P L +++    SG+   +  E  + A   +  +
Sbjct: 172 NGARLERALINFMLDVHSNNGYLELMPPALVNSESLQGSGQLPKFSNESFKCA---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   ++ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHKNEIIDPKLLPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ ++      I  +L L    +   +G +G   S     E  + ++ 
Sbjct: 289 YWFS-DPNKSLEAHKEITADAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSNK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    +  DF
Sbjct: 348 CYREISSCSNCRDF 361


>gi|315635769|ref|ZP_07891032.1| serine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315480066|gb|EFU70736.1| serine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 412

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +   + G  E  VP + +++    +G+   +  ++ ++     + + 
Sbjct: 168 GARLERALINYMLDFNRQRGFNEWYVPFMANSNTLQGTGQLPKFADDLFKI---EGEDLY 224

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++   I     LP         FR E     R   G++R  +F   +  
Sbjct: 225 LIPTAEVSLTNLYNDEIIDKSELPLLLTSYTPCFRKEAGSAGRDTRGLIRQHQFDKVEMV 284

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +   + E S   + KM      +   LGL    ++  SG +G   
Sbjct: 285 AI-TSQEQSDEIFEKMVNCASDLLSSLGLCHQKVQLCSGDLGFSA 328


>gi|260773037|ref|ZP_05881953.1| seryl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612176|gb|EEX37379.1| seryl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 435

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 82/246 (33%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 135 DFEVKDHVDLGEMSGGLDFASATKITGARFVIMKGQFARLHRAIAQFMLDLHTEQHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           + VP L + +    +G+   +GK++           D + +     PT E  +T++ R  
Sbjct: 195 LYVPYLVNQETLFGTGQLPKFGKDLFHTEPLTEKASDEDPRRFSLIPTAEVPVTNLVRDV 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TAHAEKVLQLLNLPYRKVVLCTGDMGFGACKTYDLEVWVPAQKTYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|323495032|ref|ZP_08100121.1| seryl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323310689|gb|EGA63864.1| seryl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 435

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGDGLDFASATKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +GK++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLEEKVNDEEPRKLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ISDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMDALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|315023937|gb|EFT36939.1| glycyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
          Length = 513

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 117/363 (32%), Gaps = 72/363 (19%)

Query: 99  RNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
            N   +   P T + +  +       S   LPF   QI   FR+E+  R  + R REF  
Sbjct: 208 ENAMELYLRPETAQGIFVNFSNVQKTSRHKLPFGIAQIGKAFRNEIVARQFIFRMREF-- 265

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     E  +  +     + L  +                                
Sbjct: 266 ----------EQMEMQFFVAPGTELSFYE------------------------------- 284

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E +       +   + +EN  F D   L                   E            
Sbjct: 285 EWKQKRLNWHLALGLGTENYKFHDHEKLAHYANAAADIEFKFPFGFKELE---------- 334

Query: 278 SARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV------- 328
              GI     F      K+S      F    G+ +   +    +G  R+  AV       
Sbjct: 335 ---GIHSRTDFDLSAHEKFSGRKLQYFDPERGESYVPYVVETSVGLDRMFLAVFSSSLKE 391

Query: 329 --IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             +E       +  P ++AP K +++ +   D    +  EKI+  L K   +V +++  +
Sbjct: 392 EALEDGSTRTVLSLPPALAPVKAAILPLVKKD-GLPEFAEKIFNEL-KYDFNVIFEE-KD 448

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            IG ++   D +G P  + V    ++D+ V ++ R T  +E +S+E++      +  N R
Sbjct: 449 SIGKRYRRQDAIGTPFCITVDHDSLNDNTVTLRERDTMKQERVSVEDLRKIIDDKV-NFR 507

Query: 447 PVL 449
            +L
Sbjct: 508 TLL 510


>gi|261378875|ref|ZP_05983448.1| serine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269144690|gb|EEZ71108.1| serine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 431

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 78/252 (30%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ       +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIAHLHRALAQFMLDTHTLKHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVAGSILDEG 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 GLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|157736606|ref|YP_001489289.1| seryl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|166987309|sp|A8ERP6|SYS_ARCB4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157698460|gb|ABV66620.1| seryl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 412

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +   + G  E  VP + +++    +G+   +  ++ ++     + + 
Sbjct: 168 GARLERALINYMLDFNRQRGFNEWYVPFMANSNTLQGTGQLPKFADDLFKI---EGEDLY 224

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++   I     LP         FR E     R   G++R  +F   +  
Sbjct: 225 LIPTAEVSLTNLYNDEIIDKSELPLLLTSYTPCFRKEAGSAGRDTRGLIRQHQFDKVEMV 284

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +   + E S   + KM      +   LGL    ++  SG +G   
Sbjct: 285 AI-TSQEQSDEIFEKMVNCASDLLSSLGLCHQKVQLCSGDLGFSA 328


>gi|77918646|ref|YP_356461.1| histidyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123743059|sp|Q3A5R6|SYH_PELCD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|77544729|gb|ABA88291.1| histidyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 419

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 138/430 (32%), Gaps = 46/430 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG+   LP   +    +           G  E+ VP ++  +L+  S     D   KEM 
Sbjct: 7   KGMNDILPSDVETWQFLEREAHRIFKLYGFAEIRVPVVEKTELFCRSIGETTDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR+  ++   P     +   F  H     +     Y +   FR E RP+ G  R R+
Sbjct: 67  TFDDRSSNSLTLRPEGTAPVMRSFIEHKLHALDPVSKLYYMGPMFRYE-RPQKG--RYRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GP------I 202
           F    A +  +           M   Y   F  +G+ ++ +   S       P       
Sbjct: 124 FHQIGAEAIGVDDPMMDAQVLAMLCHY---FDAVGIDNVELHVNSLGCQECRPQYRQALT 180

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSD 261
           G   S    + AD            +D  +P+      D  S+ + +       +A    
Sbjct: 181 GYLESRLDKLCADCQRRYQTNPLRVLDCKVPACQEATKDAPSVLDLLCSGCNDHFAQVRQ 240

Query: 262 VHNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG---ADGKDHY 311
              E   D     +    RG++              G++ ++     + G     G    
Sbjct: 241 HLQELQIDYTINARM--VRGLDYYTKTTFEMVTNQLGSQNAVAAGGRYDGLIKELGGPAL 298

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +G + +G  R+V    E             V P     + + A  +        +  R
Sbjct: 299 PGIG-FAMGVERLVLMKGEQ-----------QVQP-PRPDVFLAALGEAAGQKAFALMYR 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L ++         G+ + +Q   A  L     +++G + ++  + +++    G +E ++L
Sbjct: 346 LQRLDLRAEMAFTGKSLKAQMRRAGKLNARYVLMLGEEELASGQAQLRDMDNGSQEPIAL 405

Query: 432 EEVINYASHR 441
           E +      +
Sbjct: 406 EGIEQALLEK 415


>gi|262305755|gb|ACY45470.1| glu- + pro-tRNA synthetase [Limnadia lenticularis]
          Length = 134

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  + ++       S+GI   R +  ++    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVFEDPETQEKKFVFQNSWGIT-TRTIGVMVMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++       +K  D      AC+K  A L   G  V  D       
Sbjct: 74  GLVLPPHVACIQVVIVPCGITASMKEEDRSALVAACKKFEADLVAAGVRVRGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|163868042|ref|YP_001609246.1| seryl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|189083558|sp|A9IS21|SYS_BART1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|161017693|emb|CAK01251.1| Seryl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 425

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 89/305 (29%), Gaps = 72/305 (23%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   N  G  E+SVP L   ++   + +   + +++ +  D          T
Sbjct: 176 RALGQFMLDVHVNEHGYTEVSVPLLVRDEIVYGAAQLPKFAEDLFQTTD----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I    +LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLTNLVNDEILEVSDLPLRFSSLSPCFRSEAGAAGRDTRGMLRQHQFWKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           + E S     +M      I  RLGL    +   +G +G                      
Sbjct: 291 SEEQSLMELERMTECAEDILKRLGLPFRTVVLSTGDMG---------------------- 328

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                                 I                    D                
Sbjct: 329 --------------FAARKTYDIEVWLPGQECYREISSCSVCGDFQGRR----------- 363

Query: 286 HIFYFGTKYSLPMSATFKGA-DGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPD 342
                       M+A ++   D K H+V  +   G    R + AV+E+     G II PD
Sbjct: 364 ------------MNARYRKEGDKKLHFVHSLNGSGTAVGRCLIAVLENYQQADGSIIVPD 411

Query: 343 SVAPF 347
            + P+
Sbjct: 412 VLQPY 416


>gi|309810164|ref|ZP_07704009.1| histidine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169436|gb|EFO71484.1| histidine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
          Length = 428

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 138/437 (31%), Gaps = 56/437 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      D V  I +    +    E+  P  ++ +++  S     D   K
Sbjct: 4   QKPKGTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFGV 149
           EM    D+ D+ +   P     +   +  +       P     + I   FR E RP+ G 
Sbjct: 64  EMYDFMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +        V    +   LG+K   +   S          
Sbjct: 122 -RQREFHQIGVESFGSDNALADVET---IVLAHDLLSTLGIKKYELHINSLGNEAVRTAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    PI   LS +      T   ++  SKD  D    S      D +  +   + 
Sbjct: 178 RQALVDYFTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIKFVSNAPRIRDYLD-DESKKN 236

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARG------------IEVGHIFYFGTKYSLPMS 299
           +       S++  + + D           G             +       G +Y+    
Sbjct: 237 FEFIIKTLSELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNH--- 293

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +  DG         +GIG  R++  +   +        P+ +    I        ++
Sbjct: 294 -LVEEFDGPKTPAV--GFGIGEERLMLVLKAQN--------PELLTDSNIDFYITNIGEE 342

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E I   L K G  V +D   +++ +QF  AD       + +G + + ++ + IK
Sbjct: 343 TITKTVE-IARELRKQGLKVQYDVEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIK 401

Query: 420 HRLTGIREDMSLEEVIN 436
               G     +++E+ N
Sbjct: 402 RLSDGESYAFNMDEIAN 418


>gi|262371908|ref|ZP_06065187.1| seryl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262311933|gb|EEY93018.1| seryl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 425

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 135 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADTLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPITNFVRDEIIDADRL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPEHSMQALEELTAHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 312 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 370


>gi|167624137|ref|YP_001674431.1| seryl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083586|sp|B0TUP4|SYS_SHEHH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167354159|gb|ABZ76772.1| seryl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 428

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 19/232 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIE 68
           D E+  H  +     G+  +++    G    +  GQ A     +   + +      G  E
Sbjct: 133 DFEVKDHVELGENIGGLDFKNAVKITGSRFIVMKGQIARMHRALAQFMLDLHTTEHGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             VP L + D  + +G+   +G+++          + +   PT E  +T++ R  I    
Sbjct: 193 AYVPLLVNEDSLMGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDTIVDEE 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +     + PE S  +  ++     
Sbjct: 253 ELPIKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL-VKPENSMQALEELTAHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            +  +LGL    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 312 TVLQKLGLPYRTVVLCTGDMGFGSSKTYDIEVWLPAQNTFREISSCSNMQDF 363


>gi|149908868|ref|ZP_01897528.1| histidyl-tRNA synthetase [Moritella sp. PE36]
 gi|149808142|gb|EDM68083.1| histidyl-tRNA synthetase [Moritella sp. PE36]
          Length = 426

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 141/445 (31%), Gaps = 58/445 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V +I+R+     G  E+ +P ++S +L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPEQTPVWQKVESILRDTVAAYGYSEIRMPIVESTNLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      R+ I++          + I   FR E RP+ G 
Sbjct: 66  EMYTFDDRNGDSLTLRP---EGTASTVRAGIQNGLLYNQERRMWYIGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L    +      + +   R++  LG++   +  +   +G      
Sbjct: 121 -RYRQFHQFGVEIFGLKGADTDAE---VILLTARLWRLLGIEQ-HVTLQLNSLGSSAERS 175

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDVHNEK 266
               A     + F  +   +            + S N  V+         A       + 
Sbjct: 176 AHKEALISFLEGFKDQLDEESQRRMYTNPLRVLDSKNPNVQALLNDAPSLADYYGEETKA 235

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSATFKGADGKDHYVQMGSY 317
            FD L +    +    ++ H    G  Y         +  + A      G  +   +   
Sbjct: 236 HFDGLCKMLDSAGVNYQINHRLVRGLDYYNYTVFEWVTESLGAQGTVCGGGRYDGLVEQL 295

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVA----PFKISLINIKAHDQVCRDACEKIYARLS 373
           G  A   V   +        +   +  A       + +  +     +       +  +L 
Sbjct: 296 GGKATPAVGFALGIERLVLLLETLELTADIAGAVDVYIAALGEGADMHGML---LAEQL- 351

Query: 374 KVGCDVFWDDMGEQIGSQF-------------AVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                       +    +F               AD  G  + +I+GS  + + +V +K 
Sbjct: 352 ----------RDQMPNVKFMMHNGGGNFKKQLKRADQNGAKVALILGSDEIENQQVTVKD 401

Query: 421 RLTG-IREDMSLEEVINYASHRFSN 444
                 ++ +++ E++N  +   S 
Sbjct: 402 LTGKTQQQTIAVTELVNKLTTLLSK 426


>gi|152978776|ref|YP_001344405.1| seryl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171704281|sp|A6VNC3|SYS_ACTSZ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|150840499|gb|ABR74470.1| seryl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 429

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 11/194 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAM 104
            K    +   + +    + G +E  VP L +      +G+   +G+++        ++  
Sbjct: 171 AKLHRALAQFMLDLHTEKHGYLETYVPYLVNHTTLYGTGQLPKFGEDLFHTKALEGEQPY 230

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I S  NLP         FR E     R   G++R  +F   + 
Sbjct: 231 ALIPTAEVPVTNLVRDEILSVENLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEM 290

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADT 216
               + PE S  +  ++      +   L L    +   SG +G         E  + A  
Sbjct: 291 VQI-VEPEKSMEALEELTGHAEEVLRLLNLPYRKVLLCSGDMGFGACKTYDLEVWLPAQN 349

Query: 217 GETQVFCSKDFMDF 230
              ++    +  DF
Sbjct: 350 TYREISSCSNMWDF 363


>gi|217316825|gb|ACK37818.1| putative glutamyl-prolyl tRNA synthetase [Barbicambarus cornutus]
          Length = 119

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           RGI+     + G  +S      F+  +  +  Y    S+ +   R +  ++    D KG+
Sbjct: 2   RGIQGAISHHLGQNFSKMFEIIFEDPETRQKQYCFQNSWELT-TRTIGVMVMVHGDDKGL 60

Query: 339 IWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + P  VA  +  ++ +               DAC K+ A LS  G     D  
Sbjct: 61  VLPPWVACVQAIIMPVGITAKSTEKDKSHLLDACNKLAADLSAAGVRARCDLR 113


>gi|149275931|ref|ZP_01882076.1| glycine--tRNA ligase (glycyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149233359|gb|EDM38733.1| glycine--tRNA ligase (glycyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 493

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 117/359 (32%), Gaps = 50/359 (13%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M            + +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 171 MFSTQFGAMAEGSEEVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEVIARQ 230

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            +MR REF   +   F    E +K      + +Y +            R +     G  +
Sbjct: 231 FIMRMREFEQMEMQFFVRPGEDAK------WFAYWK----------EARLKWHQALGTPA 274

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            ++             +   ++F  P    + + I S           ++     + +  
Sbjct: 275 DKYRFHDHVKLAHYANAATDIEFEFPFGFKEVEGIHSRTDFDLSQHQQFSGKKMQYFDND 334

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRV 324
            +   +        + +         + L M   F+  D   G+              R 
Sbjct: 335 LNEDGKPYGNYIPYV-IETSIGLDRMFLLTMINAFEEEDLSEGEKQD----------SRT 383

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +            +     +AP K+++  +   D    +  ++I   L K+  +  +++ 
Sbjct: 384 L------------LRLHPCLAPVKVAIFPLTKKD-GLPEKAKEIMNSL-KLDFNCIYEEK 429

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              IG ++   D +G P  V V  + + D+ V ++HR +  ++ + +E +    + + S
Sbjct: 430 DA-IGKRYRRQDAIGTPFCVTVDHQTLEDNTVTVRHRDSMEQQRIEIEHLETLIASKVS 487


>gi|262369374|ref|ZP_06062702.1| seryl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262315442|gb|EEY96481.1| seryl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 425

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 82/250 (32%), Gaps = 19/250 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   +        G  E
Sbjct: 135 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRAITQFMLNTHTLENGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDADRL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPEDSMQALEELTGHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              LGL    +    G +G   +     E  V +     ++    +  DF        + 
Sbjct: 312 LKALGLPYRKIILCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARYR 371

Query: 241 DIISLNSIVE 250
                   V 
Sbjct: 372 ADQKKTEFVH 381


>gi|157363624|ref|YP_001470391.1| histidyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166980050|sp|A8F593|SYH_THELT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157314228|gb|ABV33327.1| histidyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 433

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 132/402 (32%), Gaps = 39/402 (9%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  E+  P  +  +L+  S     D   KEM    D+  +++   P         F  +
Sbjct: 34  FGYKEIRTPVFEQTELFARSVGQETDIVQKEMYTFTDKGGRSITLRPEGTAPTIRAFLEN 93

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP  FY +   FR E RP+ G  R R+F              +     ++   +
Sbjct: 94  SMINLGLPQRFYYLGPMFRYE-RPQAG--RLRQFHQFGIELIGSADPAADVETIQLAKMF 150

Query: 182 LRIFH----RLGLKSI----PMRAESGPIGGDLSHEFIVLAD-------TGETQVFCSKD 226
           L        ++ + SI      RA    +     H +  + D       T   ++   K 
Sbjct: 151 LDSLELKKYKIYINSIGCQECRRAYKEALRSYYEHHYDHICDDCKRRFETNIMRLLDCKV 210

Query: 227 FMDFPIPSENT-DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
            ++    +    D+      +                H +       +    +    E+ 
Sbjct: 211 DINVAKQAPKISDYLCDHCRDHYESIKQMLTDLRVYFHEDSSLVRGLDYYTRTV--FEIK 268

Query: 286 HIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           H    G + ++     + G     G      +G +  G  R++ AV       + I  P 
Sbjct: 269 H-ESLGAQSTILAGGRYDGLCKELGGHDIPSLG-FASGIERLILAV-----KAEEIEIPK 321

Query: 343 SVAPF-KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              P+  + + +I       R    +I   L      V  D     + +Q   AD LG  
Sbjct: 322 P--PYCDVYIASIGKQ---ARVKAFQIAQGLRLCKIPVISDVNSRSLKAQLKHADKLGAI 376

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           L +I+G   ++ S V++K+ LT  + ++  + V++Y      
Sbjct: 377 LAIIIGENELAQSTVQVKNLLTETQSEVEFDYVVDYVLDLLK 418


>gi|261344310|ref|ZP_05971954.1| serine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282567914|gb|EFB73449.1| serine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 430

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 84/243 (34%), Gaps = 21/243 (8%)

Query: 17  DAEIASHKLM--LRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +  L  G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVKDHVSLGELAGGLDFPAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEKHGYQE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
           + VP L + D    +G+   +G+++       ++A        PT E  +T++ R  I  
Sbjct: 193 LYVPYLVNHDTLYGTGQLPKFGEDLFHTKPLEEEADSSTYALIPTAEVPVTNLVRDEILD 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 253 EDALPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VHPEKSMEALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++   L L    +   +G IG         E  + A     ++    +  DF      
Sbjct: 312 AEKVLQLLELPYRKVILCTGDIGFGSRKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQ 371

Query: 237 TDF 239
             F
Sbjct: 372 ARF 374


>gi|196230472|ref|ZP_03129334.1| seryl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196225402|gb|EDY19910.1| seryl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 423

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 8   LPILQENPRDA-EIASH-KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIRE 59
           +    E P  A    SH  L    G++           G   +   G +    +   + +
Sbjct: 125 VRTWGEKPAFAFTPKSHVDLGKDLGLLDFERATKISGSGFALYTGQGARLERALINFLLD 184

Query: 60  EQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G  E+S P L ++D  V + +   + ++  R  +R+D  M   PT E  +T++ 
Sbjct: 185 LHTREHGYGEVSPPFLVNSDALVGTTQLPKFEEQQYR-CERDD--MYLVPTAEVPVTNLH 241

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  I     LP  +      FR E         G++R  +F   +      TPE S    
Sbjct: 242 REEILRQEQLPIRYAAYTPCFRREAGAAGLGTRGLIRIHQFDKVELVKI-TTPETSFAEL 300

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             +  +  ++   LGL    +   +G IG   +     E          +V    +F DF
Sbjct: 301 ESLTANAEKVLQLLGLHYRVIELCTGDIGFGSAKTYDIEVWAPGQNAYLEVSSCSNFGDF 360

Query: 231 PIPSENTDFDDIISLNSIVE 250
                N  F +    N    
Sbjct: 361 QARRMNLRFKNAEGKNQFAH 380


>gi|218441904|ref|YP_002380233.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|226737066|sp|B7KFP0|SYH_CYAP7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218174632|gb|ACK73365.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 430

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 124/420 (29%), Gaps = 19/420 (4%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP        V  +  E  +R   +E+  P  +   L+        D  GK
Sbjct: 5   QALRGTRDILPHEVGYWQQVERVAAEILSRALYLEIRPPIFEQTALFERGIGEGTDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR D+++   P     +   F  H           +     FR E RP+ G  R
Sbjct: 65  EMYTFKDRGDRSITLRPEGTAGVVRSFIEHNLYATGGVQRLWYTGPMFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +      +      I   LGLK++ +   S     D  +   
Sbjct: 122 QRQFHQIGLELLGSGDYRADVE---VIALATDILQTLGLKNLKLDLNSVGNREDRQNYRQ 178

Query: 212 VLADT-GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            L D     +     D  D    +     D       I+ Q            +++ F+ 
Sbjct: 179 ALVDYLTPYKAQLDPDSQDRLERNPLRILDSKDERTKIICQDAPSILEYLGTESKRHFEQ 238

Query: 271 LPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRV---- 324
           + +         ++      G  Y               +      G Y    + +    
Sbjct: 239 VQQLLGDLNIKYQLNPCLVRGLDYYTHTAFEIQSDDLGAQATVCGGGRYDGLVVELGGPA 298

Query: 325 ---VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
              V   I        +    S  P     I I +  +        +  +L   G  V  
Sbjct: 299 TPAVGWAIGMERLILLLQQLQS-TPTLTPDIYIVSRGEKAESQGLILAQKLRHWGLSVEL 357

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G   G QF  AD  G    +I+G +   +  V++K   +  ++ ++  E+++     
Sbjct: 358 DLSGSAFGKQFKRADRTGAIACLILGDQEAENQTVQLKWMTSSQQQTLTQVELLSQLEEL 417


>gi|225159077|ref|ZP_03725385.1| glycyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224802335|gb|EEG20599.1| glycyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 508

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 119/371 (32%), Gaps = 73/371 (19%)

Query: 92  EMLRLAD----RNDKA-MIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRP 145
            M+        R+D +     P   + M   F++ + + R  LPF   Q    FR+E+ P
Sbjct: 190 NMMFETHVGALRDDSSLTWLRPETAQGMFVDFKNVVDTGRVKLPFGIAQTGKSFRNEITP 249

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           R  + RSREF   +   F    +     +                               
Sbjct: 250 RNFIFRSREFEQMEMQYFIHEDDDWAKWHR------------------------------ 279

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             H     A+  ++         +F  P     F    + + I+ ++         +   
Sbjct: 280 --HWINWCANWLKSIGLPESHLSEFDHPKAKLAFYSRGTTD-IMFKYPFGVQELWGIAAR 336

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             +D     K          H       +             K     +    +G  R+ 
Sbjct: 337 GNYDLTQHAK----------HSGKPQEIFDEATK--------KKFVPHVIEPAVGLDRIF 378

Query: 326 AAVIESSH------DGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            AV+ + +      D KG       +     +AP K++++ +  + +      +++Y ++
Sbjct: 379 LAVLCAGYSEEEVKDEKGNVEKRVVLRLSPRIAPVKVAVLPLLKNKEELTARAQELYKKI 438

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSL 431
            +     F+D+ G  +G ++   D +G P  V +  + +  D    ++ R T  ++ ++ 
Sbjct: 439 KRK-YTAFYDESGA-VGRRYRRQDEIGTPWCVTIDFETIEKDGTFTLRDRDTMQQKRITE 496

Query: 432 EEVINYASHRF 442
            E+      + 
Sbjct: 497 AELFALLDEQV 507


>gi|147920334|ref|YP_685893.1| glycyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|110621289|emb|CAJ36567.1| glycyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 577

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 65/151 (43%), Gaps = 10/151 (6%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGK--------GIIWPDSVAPFKISLINIKAH 357
           +G++    +     G  R++ +V+E ++D +         + +  +VAP  ++++ + + 
Sbjct: 422 NGENVIPHVVEPSYGVDRILYSVLEHAYDEEIVEGEGRVVMRFDRTVAPITVAVLPLLSK 481

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D +   A E I   L   G  V +D+ G  IG ++   D  G P  V V  + + D  V 
Sbjct: 482 DPLASRAAE-IARGLKAAGYFVEYDESG-TIGKRYRRNDEAGTPFCVTVDHQTIEDGTVT 539

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           ++ R +  +     + +    S      +P+
Sbjct: 540 VRDRDSMAQIRYPADGLAGLISELLCTGKPL 570



 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 69/219 (31%), Gaps = 63/219 (28%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYG 90
           I+  + G Y + PLG      +    R       G  E+  PT+    ++  SG    + 
Sbjct: 23  IYGGASGFYDYGPLGATLKRKIEDAWRRFYCVGEGFYEIEAPTIGVEAIFEASGHVGGFA 82

Query: 91  K---------EMLR----------LADRNDKAMIYGPTHEEVM---------------TD 116
                     E  R          + D   K  +    H+  +                 
Sbjct: 83  DPMTTCQKCKESFRADHVIKGEMEIPDGLKKEQMTEIIHQHHIKCPECGGDLGDVYDFNL 142

Query: 117 IFRSHI--------------------------KSYRN-LPFTFYQIQLKFRDELRPRFGV 149
           +F + I                          + YR  LPF   QI   +R+E+ PR GV
Sbjct: 143 MFSTWIGPGQKKKGYMRPETAQGMFVDFPRLLRFYREKLPFGVTQIGKSYRNEISPRQGV 202

Query: 150 MRSREFLMKDAYSFDLTPEGSKH-SYNKMFVSYLRIFHR 187
           +R REF   +A  F      +KH ++  +    L ++  
Sbjct: 203 IRLREFTQAEAEVFVNPQFKNKHPNFAAVKDLVLPLYDE 241


>gi|20807458|ref|NP_622629.1| glycyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|59798595|sp|Q8RB46|SYG_THETN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|20515983|gb|AAM24233.1| Glycyl-tRNA synthetase, class II [Thermoanaerobacter tengcongensis
           MB4]
          Length = 461

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 152/444 (34%), Gaps = 57/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  I  ++  +     + +    L + ++WV SG   S+      L 
Sbjct: 34  WDYGPLGVEMKNNIKRIWWKKFIQESPYNVGIDSAILMNREVWVASGHVASFSD---PLM 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR------PRFGVMR 151
           D  +    +     +++ D  +          +T  Q+ ++F  E +             
Sbjct: 91  DCKECKSRFRAD--QLIEDYIKEKGLDISIEGWTNEQM-MEFIKEHKVPCPKCGAHNFTE 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R+F +       +T +     + +      +FV++  +          +    G IG  
Sbjct: 148 IRKFNLMFKTYVGVTEDSKSEVFLRPETAQGIFVNFKNVQRT---SRKKIPFGIGQIGKS 204

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +E         T+ F   +   F  P E+ ++ +      +           +    +
Sbjct: 205 FRNEITPGNFIFRTREFEQMELEFFCKPGEDMEWFNYWRQFCMDWLVEFGLKRENLRFRD 264

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD--------G 307
              + L      +    ++ + F FG          T Y L       G D        G
Sbjct: 265 HKKEELSHYSTATT---DIEYNFPFGWGELWGIANRTDYDLRQHMEHSGEDMTYTDPVTG 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQ 359
           + +        +G  R++ A +  ++D +         +    ++AP K+++  +     
Sbjct: 322 EKYIPYCIEPSVGVDRLMLAFLVDAYDEEEVEGETRVVLRLHPAIAPVKVAVFPLSKK-- 379

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +A  KIY  L K      +D+ G  IG ++   D +G P  V       +D KV I+
Sbjct: 380 -LNEAAYKIYLDLKKK-FPAEYDESG-SIGRRYRRQDEIGTPFCVTYDFDSENDHKVTIR 436

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + +++V  Y   +  
Sbjct: 437 DRDTMEQIRIDIDQVDKYLEEKLK 460


>gi|332296462|ref|YP_004438385.1| Seryl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332179565|gb|AEE15254.1| Seryl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 426

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG + +  +   + +     G +E+  P L +      +G+   +  E+ + AD      
Sbjct: 170 LGARLVRALLNFMMDMHRSDGFVELWPPYLVNEASMYGTGQLPKFRDELFKCAD---DPY 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ FR  I S  +LP  F      FR E     +   G++R  +F   + 
Sbjct: 227 FLIPTAEVPVTNFFRDEILSDDSLPIRFCAYSACFRREAGSYGKDVRGIIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S +  + +     ++  +L L    +   SG +G   +     E  +    
Sbjct: 287 VVF-CRPEDSMNELSIITEQAQKVLKQLKLPYRVIELCSGDLGFGSAKTYDIEVYMAYSK 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              ++    +F DF     N  +         V 
Sbjct: 346 NYREISSCSNFTDFQARRANIRYKPKGGKTRYVH 379


>gi|321441319|gb|ADW85074.1| glu- + pro-tRNA synthetase [Lasiocampa quercus]
          Length = 134

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   D +   YV   S+G+   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPDTQDKKYVYQNSWGLT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             +   D C K+   L + G     D       
Sbjct: 74  GLVLPPRVAEIQAIVVPCGITASSTTEERKTLIDECRKLVDSLVEAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|188518695|ref|ZP_03004122.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188997689|gb|EDU66786.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
          Length = 418

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFVDDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           F   +       PE S      M      I   L L    +   +G +G  
Sbjct: 281 FHKVELVKL-CKPEDSFKELESMTRQAESILEALELPYRRIALCTGDLGFS 330


>gi|185178824|ref|ZP_02964612.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024432|ref|ZP_02997087.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|209554387|ref|YP_002284526.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225551523|ref|ZP_03772469.1| serine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|238065110|sp|B5ZAT6|SYS_UREU1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|184209459|gb|EDU06502.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018723|gb|EDU56763.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|209541888|gb|ACI60117.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379338|gb|EEH01703.1| serine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 418

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFVDDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           F   +       PE S      M      I   L L    +   +G +G  
Sbjct: 281 FHKVELVKL-CKPEDSFKELESMTRQAESILEALELPYRRIALCTGDLGFS 330


>gi|321441335|gb|ADW85082.1| glu- + pro-tRNA synthetase [Spodoptera frugiperda]
          Length = 134

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +   D  +  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEVVYDDPDTQEKKYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++                 D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRVADVQAIVVPCGITASSTTEERNKLMDSCKDLVKDLLAAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|302347938|ref|YP_003815576.1| Glycyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328350|gb|ADL18545.1| Glycyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 583

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCR 362
           G+ +   +     G  R++   +E ++  K     +  P  +AP   ++  +   ++   
Sbjct: 428 GRSYTPHVVEPSFGTDRLLYVALERAYREKEGRVVLSLPRYLAPVDAAVFPLIEGEEKLE 487

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   L   G  V +DD G  IG ++A AD +G P    V  + + D  V ++ R 
Sbjct: 488 ARARQLRDLLVSAGFTVLYDDSG-SIGKRYARADEIGVPAAFTVDYQTLEDGTVTLRDRD 546

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           T  +  + LE+          N
Sbjct: 547 TWRQVRLRLEDAPEALKKFIYN 568



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 92/337 (27%), Gaps = 82/337 (24%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESGRYDSYGKEM 93
            G Y   P G      +    R            E+  P +  + ++  SG  +S+   +
Sbjct: 30  AGFYDIGPYGLTVKRKIIEAWRRLFVFNHQDYVVEIETPAVGPSIVYEASGHVESFTDPV 89

Query: 94  LRLA-------------------------DRNDKAMIYGPTHEEV----------MTDIF 118
           +R                           +   + +        V             +F
Sbjct: 90  VRCTKCGRIYRADHLVEDALKVSAEGLSPEELTRKIRENNIRCPVCGGELSEVSTFNLLF 149

Query: 119 RSHIKSY---------------------------RNLPFTFYQIQLKFRDELRPRFGVMR 151
           ++ I  Y                             +P    Q+    R+E+ PR G++R
Sbjct: 150 KTQIGPYEGSVGYIRPELAQGMFVSFRRVLETMRNRMPLGIAQVGRVGRNEISPRQGMIR 209

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F + +   F     G   + +++    LR+      +   +R E G        EF 
Sbjct: 210 LRDFTIMEMEFFFDPQSGQCPNLDRVMDRKLRV------RQYKVRLEGG-----GPQEFT 258

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V     +  V          +     D    I +      +          +  ++FD L
Sbjct: 259 VRELIEKKVVAHPCMAYWMTV---GLDLVKYIGVTEDETFFEEKGPKEKAHYATQVFDQL 315

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
               R     +EV    Y G  Y L     + G D K
Sbjct: 316 VRTSRWGW--VEVAGYAYRG-DYDLSRHMKYSGQDLK 349


>gi|227530052|ref|ZP_03960101.1| histidyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227350020|gb|EEJ40311.1| histidyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 433

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 137/440 (31%), Gaps = 43/440 (9%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--S 83
           M +  + +Q  +G    LP   +    V  + R      G  E+  P  +  +++     
Sbjct: 1   MAKAKVNYQRPRGTVDILPGESELWQKVENVARNTFAEFGYSEIRTPMFEDYNVFARNVG 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRD 141
              D   K+M    D+ D+ +   P     +   +  +         P+  Y +   FR 
Sbjct: 61  DTSDIVEKQMYDFHDKGDRHIALRPEGTAGVVRAYVQNKLFGPEYAKPYKVYYMGPMFRY 120

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-- 199
           E RP  G  R R+F      + +            + +  L  F RLG+  + +   +  
Sbjct: 121 E-RPESG--RQRQFTQIGCEALNSESPQIDAE---VILEALMFFKRLGISGLRVAINTLG 174

Query: 200 ----------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                            P   +LS +          +V  SKD  D  I ++     D +
Sbjct: 175 DKETRDNYRQALIDYLKPHYDELSDDSKERLYKNPLRVLDSKDETDKKIVADAPSILDSL 234

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSAT 301
           S  S     +              F+          RG++     IF   +  S      
Sbjct: 235 SDYSAKYFDS-------VKRILDKFNVDYVVDNEMVRGLDYYTHTIFEIMSN-SSVFGGG 286

Query: 302 FKGADGKDHYVQMGSYGIGAMR--VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +    G   Y  + S   G     +   +              S  P     +      +
Sbjct: 287 YTTICGGGRYNGLISQIGGPDEGGIGYGIGVERLLLLLRQENKSFIPQPGLDLFFATVGE 346

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE-- 417
              +   ++   L  +G  V  D  G ++G+Q   A         ++G   VS  ++E  
Sbjct: 347 EADEFAFELMEPLRNMGIKVDKDYQGLKVGTQIKEASRRNSKYFAVIGDNEVSSKEIELN 406

Query: 418 IKHRLTGIR-EDMSLEEVIN 436
           +    +  + + +S++E+++
Sbjct: 407 LTEADSSEKGQKVSIDELLS 426


>gi|225550730|ref|ZP_03771679.1| serine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379884|gb|EEH02246.1| serine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 418

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           F   +       PE S      M      I   L L    +   +G +G  
Sbjct: 281 FHKVELVKL-CKPEDSFKELESMTRQAESILEALELPYRRIALCTGDLGFS 330


>gi|188524127|ref|ZP_03004200.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867376|ref|ZP_03079380.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273528|ref|ZP_03206064.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|195660003|gb|EDX53383.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660852|gb|EDX54105.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198250048|gb|EDY74828.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
          Length = 418

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           F   +       PE S      M      I   L L    +   +G +G  
Sbjct: 281 FHKVELVKL-CKPEDSFKELESMTRQAESILEALELPYRRIALCTGDLGFS 330


>gi|188533175|ref|YP_001906972.1| histidyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|229558666|sp|B2VE90|SYH_ERWT9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|188028217|emb|CAO96075.1| Histidyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 425

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 74/431 (17%), Positives = 140/431 (32%), Gaps = 53/431 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V  I+++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAVWQRVEQILKQVLSSYGFSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M     R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQIGAEVFGLQGPDIDAELIMM---TARWWKALGIAD-HVSLELNSIGSLEARANY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   +++    +  +    +    
Sbjct: 178 RNALVAFLEQHIEVLDEDCKRRMYSNPLRVLDSKNPDIQALLNDAPALGDYLDDESREHF 237

Query: 262 VHNEKLFDSLP---ENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
                  D+        +   RG++     +F       G + ++     + G      G
Sbjct: 238 AGLCHQLDAAGIAYRVNQRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +             P ++  + + A     + A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN---------PEFEPMRVVDVYVIASGDGVQSAAML 346

Query: 368 IYARLSKVGCDVFWDDMGEQIG-----SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  RL     ++         G      QFA AD  G  + +++G   V++ ++ IK   
Sbjct: 347 LAERLRDALPELKLMT---NFGGGNFKKQFARADKWGARIALVLGEDEVANKQLVIKDLR 403

Query: 423 TGIREDMSLEE 433
            G ++ ++  +
Sbjct: 404 NGEQQTLAQSD 414


>gi|171920715|ref|ZP_02931931.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|171903457|gb|EDT49746.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
          Length = 418

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           F   +       PE S      M      I   L L    +   +G +G  
Sbjct: 281 FHKVELVKL-CKPEDSFKELESMTRQAESILEALELPYRRIALCTGDLGFS 330


>gi|309803244|ref|ZP_07697341.1| histidine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|312875673|ref|ZP_07735674.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|329920142|ref|ZP_08276973.1| histidine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|308164752|gb|EFO67002.1| histidine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|311088927|gb|EFQ47370.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|328936596|gb|EGG33040.1| histidine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 428

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 138/437 (31%), Gaps = 56/437 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      D V  I +    +    E+  P  ++ +++  S     D   K
Sbjct: 4   QKPKGTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFGV 149
           EM    D+ D+ +   P     +   +  +       P     + I   FR E RP+ G 
Sbjct: 64  EMYDFMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +        V    +   LG+K   +   S          
Sbjct: 122 -RQREFHQIGVESFGSDNALADVET---IVLAHDLLSTLGIKKYELHINSLGNEAVRTAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    PI   LS +      T   ++  SKD  D    S      D +  +   + 
Sbjct: 178 RQALVDYFTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLD-DESKKN 236

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARG------------IEVGHIFYFGTKYSLPMS 299
           +       S++  + + D           G             +       G +Y+    
Sbjct: 237 FEFIIKTLSELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNH--- 293

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +  DG         +GIG  R++  +   +        P+ +    I        ++
Sbjct: 294 -LVEEFDGPKTPAV--GFGIGEERLMLVLKAQN--------PELLTDSNIDFYITNIGEE 342

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E I   L K G  V +D   +++ +QF  AD       + +G + + ++ + IK
Sbjct: 343 TITKTVE-IARELRKQGLKVQYDVEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIK 401

Query: 420 HRLTGIREDMSLEEVIN 436
               G     +++E+ N
Sbjct: 402 RLSDGESYAFNMDEIAN 418


>gi|291288281|ref|YP_003505097.1| seryl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885441|gb|ADD69141.1| seryl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 422

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 12/197 (6%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           ++ LG K    +   + +     G  E+  P L +A+    +G+   + ++  +      
Sbjct: 165 YMGLGAKLERALINFMLDAHAERGYKEVLAPYLVNAEAMKGTGQLPKFEEDAFKC---EK 221

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
             +   PT E  +T+++   I     LP         FR E     +   G++R  +F  
Sbjct: 222 DGLYLIPTAEVSVTNLYSQEILDEEMLPVKHCSYSACFRREAGSHGKDVRGLIRQHQFNK 281

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVL 213
            +     + PE S     ++  S   I  +L +    M   SG +G   +     E  + 
Sbjct: 282 VELVKV-VKPEDSDTELMELLESAEMILQKLNIPYRIMTLCSGDLGFSSAKTFDIEVWLP 340

Query: 214 ADTGETQVFCSKDFMDF 230
           +  G  ++     FMDF
Sbjct: 341 SQGGYREISSCSTFMDF 357


>gi|258619958|ref|ZP_05714998.1| histidyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|262172169|ref|ZP_06039847.1| histidyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|258587691|gb|EEW12400.1| histidyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|261893245|gb|EEY39231.1| histidyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 422

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 149/439 (33%), Gaps = 54/439 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  +++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+    +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGISE-HVRLELNSIGSLEARA 175

Query: 210 FIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A     + + S    D            + S+N D   I+     +  +    +  
Sbjct: 176 NYRSALIEYLEQYQSVLDEDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQ 235

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--------- 305
                 +L D+        +   RG++     +F + T+ SL    T  G          
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQ 294

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        + +G  R+V  ++E+  +             +   + +    +    A
Sbjct: 295 LGGKPTPAV--GFAMGLERLVL-MMETLGNTD---------VRRSVDVYMVTAGEGTMMA 342

Query: 365 CEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K+  +L +   G  V     G     QF  AD +G  + +++G   V+   V +K   
Sbjct: 343 GMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLA 402

Query: 423 TGIREDMSLEEVINYASHR 441
            G +  ++  EV    +H 
Sbjct: 403 GGDQSTVAQAEVAKLLAHL 421


>gi|15920555|ref|NP_376224.1| glycyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|15621338|dbj|BAB65333.1| 571aa long hypothetical glycyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 571

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 66/142 (46%), Gaps = 7/142 (4%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVC 361
           +G+     +     G  R +   + +++  K     +  P  +AP+ +++  +   +++ 
Sbjct: 417 NGEKIIPHVVEPSFGVERCLYLTLLNAYKEKEGRIVLSLPKYLAPYDVAVFPLLEKEELI 476

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++Y  L +   D  +DD G  IG ++A AD +G P  + +  + + D+ V I+ R
Sbjct: 477 N-KAKEVYN-LVRERFDTIFDDSG-SIGKRYARADEIGVPYSITIDPQTLVDNSVTIRDR 533

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +  +++ ++++     F 
Sbjct: 534 DTWQQIRVNINDIVSVLERLFK 555



 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 84/337 (24%), Gaps = 89/337 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESGRY------- 86
            G+Y   P+G +  + +  + R       +    E+  P +    +   SG         
Sbjct: 26  AGLYDIGPIGVRIKNKIIELWRRYFIYDNSEFVVEIETPMITPYKVLEASGHVENFTDPI 85

Query: 87  ------------DSYGKEMLRLA---------DRNDKAMIYGPTHEEV-------MTDIF 118
                       D   +E+ ++          DR  +                     +F
Sbjct: 86  VECTKCHKIYRADHLIEELAKINVEGLSPSELDRIIREKGLKCPACGGELGEVRLFNLLF 145

Query: 119 RSHIKSY---------------------------RNLPFTFYQIQLKFRDELRPRFGVMR 151
            ++I  Y                           + LP    Q+    R+E+ PR G++R
Sbjct: 146 TTNIGPYTGNQGFLRPETAQGMFTSFKRVFEAFRQKLPLGIAQVGRVARNEISPRQGLIR 205

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF + +   F            K     L I                 +  +   E+ 
Sbjct: 206 MREFTIMEVEFFFDPESNVNPPLEKFGNMKLNILR-----------GEDKLKNEKPKEYS 254

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV--EQWTAPYAATSDVHNEKLFD 269
           +     E  V            ++      + S           A Y+  +      + D
Sbjct: 255 IEELLKEKIVLNPWMLYWMATAAKFVTALGMKSYYFEEKLPHERAHYSKQTFDQIVVIGD 314

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E    + R           T Y L     + G D
Sbjct: 315 EKVEISGHAYR-----------TDYDLSRHMKYSGQD 340


>gi|331270693|ref|YP_004397185.1| serine--tRNA ligase [Clostridium botulinum BKT015925]
 gi|329127243|gb|AEB77188.1| serine--tRNA ligase [Clostridium botulinum BKT015925]
          Length = 426

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +     +      G  E+  P + + +    +G+   + ++  ++   
Sbjct: 167 IYKGLGARLERAIINYFLDMHTIDHGYTEILPPYMVNRESMTGTGQLPKFEEDAFKV--- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R+ I +   LP         FR E     R   G++R  +F
Sbjct: 224 ENNGYFLIPTAEVPVTNMYRNEILNGEELPIKHAAYSACFRAEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLSHEFI 211
              +   F + PE S     K+      +   LGL    +R   G +G         E  
Sbjct: 284 NKVELVKF-VKPEQSYDELEKLTNDAEDVLKGLGLPYRVVRICKGDLGFTAALKYDIEVW 342

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           + +     ++    +F DF     N  + D          
Sbjct: 343 MPSYNRYVEISSCSNFEDFQARRANIRYKDNQKSKPEFIH 382


>gi|303240067|ref|ZP_07326588.1| seryl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302592336|gb|EFL62063.1| seryl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 423

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +   ++   + +    + G  E+  P +   +  + +G+   + ++  ++A  
Sbjct: 164 FYKGLGARLERSLMNFMLDLHTGKHGYTEVFPPFMVHRNSMIGTGQLPKFEEDAFKVA-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  I   + LP         FR E     R   G++R  +F
Sbjct: 222 -NNDYFLIPTAEVPVTNMYREQILDAKELPIKHAAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F  TPE S      +      +   LG+    ++   G +G   + ++ + 
Sbjct: 281 NKVELVKF-TTPETSYEELEALTRDAEEVLQILGIPYRVVKICVGDLGFTAAMKYDIE 337


>gi|313891371|ref|ZP_07824987.1| histidine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313120146|gb|EFR43322.1| histidine--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 418

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 139/431 (32%), Gaps = 43/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP        +   IR+  +  G  E+  P  ++ +L++       D   KEM  
Sbjct: 6   GTQDILPENIYKWQYLEREIRQICDLYGFKEIRTPIFEATELFLRGIGDTTDVVTKEMYT 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P +   +   +  +     N     + I   FR + RP+ G  R REF
Sbjct: 66  FNDRGGRSITLRPENTAAVVRSYLENKMYADNTTHKLFYIGSMFRYD-RPQAG--RYREF 122

Query: 156 LMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPMRAES-GPIG-GDLSHE-F 210
                  F L   GS + Y   ++    ++ F  LGLK + +   S G I    + HE  
Sbjct: 123 HQ-----FGLEALGSDNPYVDAEVIDLAVQFFKDLGLKELKLHINSVGHIECRKVFHEKL 177

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I   +  + ++    +   +  P    D  +      I            D   +     
Sbjct: 178 IAFLEPKKDELCEDCNTRLYKNPLRVLDCKNTTCKRIIDGAPNIVDCLCDDCSEKFEKLK 237

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFK------------------GADGKDHYV 312
              ++      ++   +       +      ++                     G     
Sbjct: 238 TYLDELGIEYIVDPLLVRGLDYYTNTAFEIMYEPLGAQSTICGGGRYDGLVNEIGGIQVP 297

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +G + IG  R+V A+       K  ++P+     ++ +  +    +        I   L
Sbjct: 298 GIG-FAIGMERLVLAL------EKQNLFPEVKNENQVFIATVG---ENAIIKGVGIVKAL 347

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +    V     G+ + S    AD   +   +I+G   +   K  +K+  T  ++++  E
Sbjct: 348 RREQIHVGIAMQGKSLKSLLKQADKEKYQFVLIIGEDELQKGKAILKNMETKEQKEIDFE 407

Query: 433 EVINYASHRFS 443
            ++        
Sbjct: 408 SIVEVVKKMVK 418


>gi|228993636|ref|ZP_04153543.1| Glycyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228766065|gb|EEM14712.1| Glycyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 117/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +     +       LG+                 
Sbjct: 211 FTFRTREFEQMELEFF-CKPGEDLEWFTFWRNTCKNWLLSLGMH---------------- 253

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 254 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 299 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 338

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 339 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGAGEVFAELAK-DFVV 394

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 395 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 453

Query: 440 HRFS 443
            +  
Sbjct: 454 KKIQ 457


>gi|296136104|ref|YP_003643346.1| seryl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295796226|gb|ADG31016.1| seryl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 430

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 8/198 (4%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E  VP + SA     +G+   + +++  +     ++  
Sbjct: 172 ARLHRALAQFMLDVHTTEHGYTEAYVPYIVSAQALRGTGQLPKFEEDLFPVKHGEGESHY 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  F      FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPLTNLVRDQIVDAAQLPLRFVAHTPCFRSEAGSGGRDVRGLIRQHQFDKVE-L 290

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGET 219
            +    E S  +  ++      I  RL L    +   +G +  G   +H+  V      T
Sbjct: 291 VWVTRAEESATALEQLTAHAESILQRLQLPYRTIVLCTGDMGFGSARTHDIEVWLPAQNT 350

Query: 220 QVFCSKDFMDFPIPSENT 237
               S         +   
Sbjct: 351 YREISSCSNMEAFQARRM 368


>gi|212690852|ref|ZP_03298980.1| hypothetical protein BACDOR_00340 [Bacteroides dorei DSM 17855]
 gi|237712657|ref|ZP_04543138.1| glycyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237723598|ref|ZP_04554079.1| glycyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265752342|ref|ZP_06088135.1| glycyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212666581|gb|EEB27153.1| hypothetical protein BACDOR_00340 [Bacteroides dorei DSM 17855]
 gi|229438051|gb|EEO48128.1| glycyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453978|gb|EEO59699.1| glycyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|263237134|gb|EEZ22604.1| glycyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 513

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 120/361 (33%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTADGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + K     L+    LG              GD  + F 
Sbjct: 261 MREFEQMEMQ-FFVKPGTELEWFPKWKEIRLKWHKALGF-------------GDDHYRFH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I       +     +H+   FD  
Sbjct: 307 ----------------------DHDKLAHYANAATDIEFLMPFGFKEVEGIHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +++ +
Sbjct: 345 QH------------------EKFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSA 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           ++  + +           P ++AP K++++ +   D    +   +I   L K      +D
Sbjct: 387 AYTEETLESGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIMNDL-KFHFHCQYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  + V  + + D+ V +++R T  +E +++ E+ N  + + 
Sbjct: 445 E-KDSIGKRYRRQDAIGTPYCITVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|119355895|ref|YP_910539.1| glycyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|119353244|gb|ABL64115.1| glycyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 489

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 153/482 (31%), Gaps = 72/482 (14%)

Query: 19  EIASHKLM---LRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   HKL+    R G I   S         + + PLG +   N+  +      R     +
Sbjct: 17  EKVMHKLVSLAKRRGFIFPSSEIYEGLSSCFDYGPLGSEMKKNIKDLWWNAMTRRHQNIV 76

Query: 70  SV--PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH--EEVMTDIFRS----- 120
            +    + +  +W  SG   S+   M    D       Y   H  E  +  + R      
Sbjct: 77  GIDASIMMNPRVWEASGHVASFNDPM---IDDKATKRRYRADHLIENHIEKLRRDGKDDT 133

Query: 121 ---------HIKSYRNLPFTFYQI----QLKFRDELRPRFGVMRSREF-LMKDAYSFDLT 166
                       +  +L    Y I     +K +D     +     R+F LM       L 
Sbjct: 134 ALKVQTAYEQASTAADLNRALYDIIIAEGIKAQDTGSGEWT--EVRQFNLMFQCGMGALA 191

Query: 167 PEGSK-----HSYNKMFVSYLRIFHR------LGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            + S       +   +FV++  +          G+  I     +  + G+     +V  +
Sbjct: 192 DKASIVYLRPETAQGIFVNFHNVRESSRMKVPFGIAQIGKAFRNEIVKGNFIFR-MVEFE 250

Query: 216 TGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             E Q F           +   + F+   S   I       Y      H   L   +   
Sbjct: 251 QMEMQYFVKPGTQAEAFEAWREERFNWYTSALGINRDKLHWYKHDKLAHYADLAYDIKFE 310

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
                  IE  H     T + L     + G +         + +   +     G  R+  
Sbjct: 311 FPFGIEEIEGIHSR---TDFDLKQHQEYSGKNMEYIDQLTNERYIPYVVETSAGCDRLFL 367

Query: 327 AVIESSHDGK--------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           A++  ++            + +   VAP K +++ +    ++  +   +I   L ++   
Sbjct: 368 ALLSDAYSEDVVDGEPRISLRFSPKVAPVKAAVLPLLKKGEMA-EKAARIADDLRQL-YM 425

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +  DD G  IG ++   D +G P  + +  + + +  + I+HR T  +E +S   +  + 
Sbjct: 426 IQQDDAG-SIGKRYRRQDEIGTPFCLTIDHETLENDTLTIRHRDTASQERISASSIREFL 484

Query: 439 SH 440
           + 
Sbjct: 485 AA 486


>gi|229549690|ref|ZP_04438415.1| histidyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255972388|ref|ZP_05422974.1| histidyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|312951289|ref|ZP_07770190.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|229305170|gb|EEN71166.1| histidyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255963406|gb|EET95882.1| histidyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|310630725|gb|EFQ14008.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315152595|gb|EFT96611.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315159885|gb|EFU03902.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0312]
          Length = 433

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 129/426 (30%), Gaps = 33/426 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 204 GDLSHEFIVLADTGE---TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
              +     L D  E    ++           P    D  D      + E  +       
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILEYLNE 231

Query: 261 DVHNEKLFDSLPENKRVSARGIEV----GHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                    +   +       I+     G  +Y  T + +   A   GA  +      G 
Sbjct: 232 PSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGA--QSTICAGGR 289

Query: 317 YGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRD-------ACEKI 368
           Y      +          G GI     ++   ++ +  +   D            A  ++
Sbjct: 290 YNGLVEELGGPDTPGFGFGMGIERVLLTMEAEEVVIPALSELDAYVVGIGSETNVAALQL 349

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              +   G     D M  +  +QF  AD L   L + +G   +++  V +K   T   + 
Sbjct: 350 VQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVKSMATREEKA 409

Query: 429 MSLEEV 434
             L  +
Sbjct: 410 FPLSTI 415


>gi|55379745|ref|YP_137595.1| histidyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|68052895|sp|Q5UXW4|SYH_HALMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|55232470|gb|AAV47889.1| histidyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 435

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 131/434 (30%), Gaps = 54/434 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P   +A       + +   R G  E+  P L+  +++V +SG  +   +E+  
Sbjct: 6   KGFRDFYPKEMQARRWAMDTLEDVAQRYGFREIGTPALEPTEMYVDKSG--EEIVEELYS 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +  +F  +    S    P  +   +  +R E  P+ G  R R
Sbjct: 64  FEDKGGRKVALTPELTPTVARMFVAKQQELS---KPIKWVSTRPFWRYEE-PQQG--RFR 117

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEFI 211
           EF   +   F      +      + V  L     LGL  +   +R     I   +   F 
Sbjct: 118 EFYQTNVDIFGSAEPTADAEILAVAVDML---TDLGLTGEDFEIRVSHRDILSGVLESFE 174

Query: 212 VLADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              D  E              +++D    +  +          +               +
Sbjct: 175 ADVDVPEAIRAVDKRAKVDHDEYLDALAEAGLSYGQADTFDEMLQIDAEEIETLGDLTGS 234

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYF--------GTKYSLPMSATFKGADGKDHYVQMG- 315
           E +  +    + V     + G   +         G  Y   +      + G+      G 
Sbjct: 235 EDVRTATDNLQAVLDAAEDFGVREHLTVSLTTARGLDYYTGVVFECFDSTGEVSRSVFGG 294

Query: 316 --------SYGIGAMRVVA-----AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                    +G      V      A ++      G +WP         ++ +       R
Sbjct: 295 GRYDDLIEGFGGQPTPAVGFAPGHATLQLLCQRAG-VWPAEELSTDYYVLQVGD----TR 349

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKH 420
               +I   L + G  V  D      G+Q   AD  G      VIVG + + + +V +K 
Sbjct: 350 PTAARIARDLRERGHVVESDVADRSFGAQMGYAD--GINAETVVIVGEQDLENDEVTLKE 407

Query: 421 RLTGIREDMSLEEV 434
              G +  + L   
Sbjct: 408 MDDGEQVSVPLSAF 421


>gi|302336512|ref|YP_003801719.1| seryl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301320352|gb|ADK68839.1| seryl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 428

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 76/238 (31%), Gaps = 19/238 (7%)

Query: 29  TGMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           TGMI         G   +L  G  A     +     +   R G  E   P + + D    
Sbjct: 149 TGMIDFDRGVKLAGSRFYLLGGMGARMERALINFFIDMHVRAGFKEWWPPVITNYDSLFG 208

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +G+   + +++  ++      M   PT E ++T+I R        LP  +      FR+E
Sbjct: 209 TGQLPKFDEDLFHVSG----GMYLIPTAEVMLTNIHRDETLDASQLPLLYTAFTPCFREE 264

Query: 143 L----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
                R   G++R  EF   +   F   PE S      M          LGL    +   
Sbjct: 265 AGSAGRDTRGIIRVHEFDKVEMVKF-AKPEDSMSQLESMVAEAELCLKTLGLPYHVVTLC 323

Query: 199 SGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           +G IG         E  + +     ++    +  DF     N  + D           
Sbjct: 324 TGDIGFSACKCYDIEVWLPSYNSYKEISSCSNCGDFQARRANIKYRDPSEFKGARYVH 381


>gi|297566462|ref|YP_003685434.1| histidyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296850911|gb|ADH63926.1| histidyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 430

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 130/418 (31%), Gaps = 47/418 (11%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY---GKEMLRLADRNDKAMI 105
               +    ++    +GA  +  P  + A+++ +     S     KEM    DR ++ + 
Sbjct: 24  VFRYIVETAQKVLASSGAQPIHTPIFEYAEVFQKGVGLTSDIVVKKEMYVFEDRGERLLA 83

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD- 164
             P     +   +  H       P   +     FR E R + G  R ++F   D  +   
Sbjct: 84  LRPEPTASIVRAYNEHGMKVWPQPVRLFTWGPIFRAE-RHQKG--RYKQFHQVDYEAIGS 140

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDL 206
             P     S   M     +I+  LGL+ + ++  S                   P    L
Sbjct: 141 ADPLVDAESIALMV----KIYRELGLQGLEVKLGSVGDPEDRLRYNAYLRELFRPHVKRL 196

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENT-DFDDIISLNSIVEQWTAPYAATSDVHNE 265
           S +     ++   ++  SKD  D  +  E           +       A       +   
Sbjct: 197 SQDSQARLESNPMRILDSKDPGDQALLGELQVKPMLEFLGSESSAFHQAVQRYLERLGIP 256

Query: 266 KLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIG 320
              D               EV H    G K +L     + G     G      +G +GIG
Sbjct: 257 FHVDPSIVRGLDYYVRTAWEVHH-RQIGAKSALGGGGRYDGLSEMLGGPRVPGVG-FGIG 314

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             RV  A+     + +GI  P   +P  + L  +   D+  +     +  RL +    V 
Sbjct: 315 IERVAIAL-----EEEGISIPPDPSP-DLYLAPL---DEAAKGEALSLAERL-RPKFRVE 364

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                +++G     A   G      +G        V +KH  +G + ++  E +    
Sbjct: 365 IGYSVKKVGKALEEALKRGARYVGFLGEAERQKGVVALKHLASGEQREVRWEALEEAL 422


>gi|77459804|ref|YP_349311.1| seryl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123604068|sp|Q3KA84|SYS_PSEPF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|77383807|gb|ABA75320.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Pseudomonas fluorescens Pf0-1]
          Length = 426

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 10/204 (4%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A     +G+   + +++ ++A   +  + 
Sbjct: 170 ARLHRALAQFMINLHVTEHGYEEAYTPYLVQAPALQGTGQLPKFEEDLFKIAREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEIVDSKQLPIKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  ++   LGL    +   +G +G         E  + +   
Sbjct: 290 QI-VEPSKSMEALESLTANAEKVLQLLGLPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        F +
Sbjct: 349 YREISSCSNCGDFQARRMQARFRN 372


>gi|282891064|ref|ZP_06299569.1| hypothetical protein pah_c045o080 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499057|gb|EFB41371.1| hypothetical protein pah_c045o080 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 515

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 116/365 (31%), Gaps = 65/365 (17%)

Query: 93  MLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +      +         P   + +   FR+ + + R  +PF   QI   FR+E+ PR 
Sbjct: 201 MFKTMIGAIEDPSAIAYLRPETAQGIFVNFRNVLDTSRVKMPFGIAQIGKAFRNEVTPRN 260

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F + P+ +   Y          +  +G+                S
Sbjct: 261 FTFRSREFEQMEIEFF-VPPKDAADWYQYWRKKRYEWWQSIGIS---------------S 304

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               + A T E     +K+            F D              Y       +   
Sbjct: 305 ENLRLRAQTLEELAHYAKEGAGSSDIEYKFPFTDPDFGELEGIAHRTDYDLRQHAEHSGQ 364

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D                       KY       +     + ++  +     GA R   A
Sbjct: 365 GDR---------------------LKY-------YDQEKNERYFPHVIEPSAGADRGALA 396

Query: 328 VIESSHDGKG-------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG---C 377
           ++  ++           + +   +AP K ++  +   D    +   +++  L K      
Sbjct: 397 LLCEAYHDDPNRPSGVVMKFHPRMAPIKAAIFPLVDKD-GMPEIARQLFTDLRKKWPIQL 455

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV      + IG ++A  D +G P    V ++ + D  V +++R T  +E + L++V  +
Sbjct: 456 DVK-----QNIGKRYARMDEVGTPYCFTVDTQTLQDQTVTVRYRDTLQQERIGLDQVKQF 510

Query: 438 ASHRF 442
            +   
Sbjct: 511 LTDHI 515


>gi|212703760|ref|ZP_03311888.1| hypothetical protein DESPIG_01808 [Desulfovibrio piger ATCC 29098]
 gi|212672728|gb|EEB33211.1| hypothetical protein DESPIG_01808 [Desulfovibrio piger ATCC 29098]
          Length = 423

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 122/425 (28%), Gaps = 58/425 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG     P        +    RE   R G +E+  P L+  DL+  S     D   KEM 
Sbjct: 9   KGFADMYPPQSSLFTRMENTAREIFGRYGFVELRTPVLEYTDLFKRSIGEETDVVQKEMF 68

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR  + M   P     +   +    +  R      +     FR E RP+ G  R R+
Sbjct: 69  TFPDRKGRMMTMRPEATAGVMRAYVEDARYSRESVSRLFTTGPMFRYE-RPQKG--RMRQ 125

Query: 155 FLM--KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGG-- 204
           F     +          +      + +   R    LGLK + ++  S       P+    
Sbjct: 126 FHQINCECLGSHSPYADAD-----LIIMLTRFLTALGLKDLTLKLNSLGCAHCRPLFKQA 180

Query: 205 --DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             D  H         E      +      +  +      +      +  +  P       
Sbjct: 181 LVDYLHRQDCCDQLCEDCTRRMETNPLRVLDCKQEKCRCVTDEAPRLLDYNCPECKEHFD 240

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP---------------MSATFKGADG 307
              +L D+      +  R +  G  +Y  T + +                     K   G
Sbjct: 241 TVLRLLDAAGVKYEIDHRLV-RGLDYYCRTTFEVVSGSIGAQAAVAGGGRYDGLVKSVGG 299

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            D      + G   M  +A ++    D +    PD  A          A D   RD    
Sbjct: 300 PDVPGVGFACG---MERLALML---GDEEAPR-PDFYAV---------AMDAQSRDLSFG 343

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +  RL  +G     +      G +     A         I+G    +   V +K   +G 
Sbjct: 344 LVQRLRGLGLKGEMNFSD--AGFKGLMRQAGKSNARFCCIMGPDEAAAGAVVVKDMDSGE 401

Query: 426 REDMS 430
           ++ +S
Sbjct: 402 QQTLS 406


>gi|319407542|emb|CBI81192.1| Seryl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 425

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   +  G  E+SVP L   ++   + +   + +++ R  D          T
Sbjct: 176 RALGQFMLDMHVDEHGYQEISVPLLVRDEIVYGAAQLPKFSEDLFRTID----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  + ++  S I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLVNLVNSEILDITELPLRFTSLTPCFRSEAGAAGRDTRGMLRQHQFRKVELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           T E S     +M      +  RLGL    +   +G +G
Sbjct: 291 TEEQSLDELERMTECAENVLKRLGLPFRTVVLSTGDMG 328


>gi|313676633|ref|YP_004054629.1| glycyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312943331|gb|ADR22521.1| glycyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 492

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 114/351 (32%), Gaps = 50/351 (14%)

Query: 93  MLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       ++D + K  +   T + +  +       +   +PF   QI   FR+E+  R 
Sbjct: 174 MFSTQMGSVSDGSGKIYLRPETAQGIFVNFLNVQKTARMKVPFGIAQIGKAFRNEIVARQ 233

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      Y K     L+    +G+ S  +R           
Sbjct: 234 FIFRMREFEQMEMQFF-VRPGEEMEWYEKWRDMRLKWHKAIGIASEDLRL---------- 282

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE   LA      V        FP   +  +     +   +                E  
Sbjct: 283 HEHEKLAHYANAAV---DVEYKFPFGFKEVEGIHSRTDFDLKSHQEVSKKKLQYFDPEIG 339

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            + +P     S     VG    F   +         G   K                   
Sbjct: 340 KNYIPYVVETS-----VGCDRLFLMLFCSAFKNEEVGEGDKIKTRT-------------- 380

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +    ++AP K +++ +   D    +  ++IY  L     +V +++    
Sbjct: 381 ---------YLKLHPALAPVKAAILPLTKKD-GLPEKGQEIYKSLKGA-FNVVYEE-AAS 428

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           IG ++   DL+G P  + V  + + D  V I+HR +  +E M + E+ +Y 
Sbjct: 429 IGKRYTRQDLIGTPFCIAVDHQTLEDETVTIRHRDSTEQERMPVSELESYI 479


>gi|240172984|ref|ZP_04751642.1| glycyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 460

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/478 (14%), Positives = 138/478 (28%), Gaps = 126/478 (26%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGK------ 91
           + + PLG +  +N+     R         + +    +   ++WV SG  + +        
Sbjct: 32  WDYGPLGVELKENIKRQWWRSVITSRDDVVGIDSSIILPREVWVASGHVEVFHDPLVESL 91

Query: 92  -----------------------------------------------EML------RLAD 98
                                                           M+       +  
Sbjct: 92  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPDTGEPGQWTEPREFNMMLKTYLGPIET 151

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                 +   T + +  +       S +  PF   QI   FR+E+ P   + R+REF   
Sbjct: 152 EEGLHYLRPETAQGIFINFANVVTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 211

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +   F + P  +K  +     + L+ +  LG+    +R                      
Sbjct: 212 EMEFF-VEPSTAKEWHQYWIDTRLQWYVELGIDPQNLRL--------------------- 249

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                     + P    +   D  + +         P+     V N   FD         
Sbjct: 250 ---------WEHPKEKLSHYSDRTVDIEYKFGFLGNPWGELEGVANRTDFDLST------ 294

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG- 337
                  H  + GT  +      +   +   +   +     G  R   A +  ++     
Sbjct: 295 -------HSKHSGTDLNF-----YDQVNDTRYTPYVIEPAAGLTRSFMAFLIDAYSEDEA 342

Query: 338 ------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       +     +AP K +++ +  H          + A L     ++ +DD G
Sbjct: 343 PNAKGVMEKRTVLRLDARLAPVKAAVLPLSRH-ADLSPKARDLAAELRTCW-NIEFDDAG 400

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             IG ++   D +G P  V V    + D+ V ++ R    +E +++++V +Y + R  
Sbjct: 401 A-IGRRYRRQDEIGTPYCVTVDFDSLEDNAVTVRERDAMTQERIAIDKVADYLAVRLK 457


>gi|194476552|ref|YP_002048731.1| seryl-tRNA synthetase [Paulinella chromatophora]
 gi|171191559|gb|ACB42521.1| seryl-tRNA synthetase [Paulinella chromatophora]
          Length = 426

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G K    +   + +   + G  E+  P L + +    SG+   + +E  R +   +  + 
Sbjct: 173 GAKLERALINFMLDFHTKKGYCEILPPILANTNSLTGSGQLPKFAEESFRCS---EDDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I +  +LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LIPTSEVPITSLHRDEIIAADDLPLKYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F   P+ S  ++ ++      +   L L    +   +G IG   +     E  +     
Sbjct: 290 WFSH-PDDSDKAHIQITADAEAVLQALELPYRVLDLCTGDIGFSATRTYDLEVWLPGANA 348

Query: 218 ETQVFCSKDFMDF 230
             ++  S +  DF
Sbjct: 349 YREISSSSNCADF 361


>gi|166362915|ref|YP_001655188.1| histidyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|189082301|sp|B0JRF1|SYH_MICAN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166085288|dbj|BAF99995.1| histidyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 426

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 130/436 (29%), Gaps = 38/436 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G    LP        +              E+  P  +   L+    G   D  GK
Sbjct: 5   QAIRGTKDILPAEVGYWQWLEETASRILGTALYQEIRTPIFEQTQLFERGIGEATDVVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR  +++   P     +   +  H           +     FR E RP+ G  R
Sbjct: 65  EMYTFLDRRQRSLTLRPEGTAGVVRAYIEHKLQAAGGVQRLWYKGPMFRYE-RPQAG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +      +      I   +GL+++ +   S     D  +   
Sbjct: 122 QRQFHQIGVELLGSDDPRADVE---VITLASEILKAVGLENLKLDINSLGNAQDRQNYRQ 178

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DS 270
            L D      + +    D    S+     + + +    ++ T           E L  DS
Sbjct: 179 ALLD------YLTPYKADLDADSQQRLEKNPLRILDSKDEKTKIICENVPSILEHLGSDS 232

Query: 271 LPENKRVSARGIEVGHIFYF------GTKY---------SLPMSATFKGADGKDHYVQMG 315
               +RV +   ++G I+        G  Y         S  + A      G  +   + 
Sbjct: 233 QKHFERVQSLLTDLGVIYNLNPCLVRGLDYYTHTAFEIQSDDLGAQATVCGGGRYDGLIA 292

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             G      V   I      + II         F +    + +  +        +  +L 
Sbjct: 293 QLGGLDTPAVGWAIGL---ERLIILLQQKQSLSFLVPDFYLVSKGEKAEARSVVLAQQLR 349

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G  V  D  G   G QF  AD       +I+G     +  V++K   T  +  ++  +
Sbjct: 350 GLGFSVELDLSGSAFGKQFKRADRAKAVGCIILGDAEAENGTVQLKWMATQEQISLTQAD 409

Query: 434 VIN---YASHRFSNNR 446
           ++        + S ++
Sbjct: 410 LLTQAGELKAQISRHK 425


>gi|255087340|ref|XP_002505593.1| predicted protein [Micromonas sp. RCC299]
 gi|226520863|gb|ACO66851.1| predicted protein [Micromonas sp. RCC299]
          Length = 407

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 137/428 (32%), Gaps = 62/428 (14%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +  + +    R+     G  E   P L+S +L+V     +    ++    D+  + +  
Sbjct: 1   MRVRNWLFGHFRDVARSFGFEEFDAPVLESEELYVRKAG-EEITTQLYNFEDKGARRVAL 59

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P        +     KS   LP  ++ +   +R E R   G  R RE    +     + 
Sbjct: 60  RPELTPSFARLIMQQGKS-LALPAKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIVGVE 115

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLAD--------- 215
              ++     +  +    F RLG+    + ++  S  +   +   F V  D         
Sbjct: 116 GVEAEAE---LLAAITDFFTRLGITSADVGIKVSSRKVLQAVLRRFDVPDDSFAPVCVVV 172

Query: 216 ----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT---------------APY 256
                   +    +        +      D +++ SI +  +                 +
Sbjct: 173 DKIEKLPREKVVEELAALGVKEAAIDGILDAMAMRSIDQLESLLGADADAVSDLKLLFSH 232

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--------KYSLPMSATFKGADGK 308
           A      +  +FD+          G+        G         +Y   + A      G+
Sbjct: 233 AEAYGYRDWLVFDASVVRGLSYYTGVVFEGFDRAGELRAICGGGRYDKLLGAL----GGE 288

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           D  +    +G        AVI      KG++ P+S+    +  + +   +   R A   I
Sbjct: 289 DRPMVGFGFG-------DAVIMELVKDKGLL-PESLKSGNVDDL-VYPMNAALRPAAMGI 339

Query: 369 YARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            ARL   G   D+  +D G++    F  A+  G    V++G K      V +K   T   
Sbjct: 340 AARLRAAGRSVDLVIED-GKKPKWAFKHAERCGASRVVLIGEKEWEQGVVRVKDLATREE 398

Query: 427 EDMSLEEV 434
            D+  E++
Sbjct: 399 TDVKPEDL 406


>gi|163749556|ref|ZP_02156803.1| histidyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161330666|gb|EDQ01603.1| histidyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 424

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 146/438 (33%), Gaps = 48/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +  ++RE  +  G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKLETVLRETVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTASTVRAGNQHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       + +           + +   R++ +LG+    +  E   +G        
Sbjct: 122 YRQFNQFGVEVYGIGTADVDAE---VLMLSARLWEKLGISD-HVTLELNTLGDPAERAAY 177

Query: 212 VLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     + F  +   +            + ++N +   ++     +  +         
Sbjct: 178 REALIAYLEPFKEQLDEESQRRMYTNPLRVLDTKNPEVQALLVDAPELMDYLGEETRAHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
            H  +L D++           RG++     +F       G++ ++     + G      G
Sbjct: 238 SHLCELLDAVGIKYVINPRLVRGLDYYNRTVFEWVTTSLGSQGTVLAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+       + +G  R+V  +                A   + +  +    +V   A  K
Sbjct: 298 KNTPAV--GFAMGLERIVLMLETLELTDDIP------ATVDVYVTAMGDASKV---AAIK 346

Query: 368 IYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG 424
           I   L +   G  V     G     Q   AD  G  + +I+G   ++ ++V +K+ R   
Sbjct: 347 IAQALRRELPGLRVMSHCGGGNFKKQMKRADKSGALIALIIGEDELASNQVAVKYLREKK 406

Query: 425 IREDMSLEEVINYASHRF 442
            +  ++ + +  Y +   
Sbjct: 407 EQALVARDGLAAYIAELI 424


>gi|313890391|ref|ZP_07824022.1| histidine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121234|gb|EFR44342.1| histidine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 433

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 135/445 (30%), Gaps = 59/445 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V A+ RE   +    E+  P  +  ++   S     D   K
Sbjct: 12  QKPKGTQDILPEEAAKWQYVEAVARETFEKYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 71

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS +++         P   Y I   FR E RP+
Sbjct: 72  EMYDFHDKGDRHITLRP---EGTAPVVRSFVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 127

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M      +F  LG+K I +   S       
Sbjct: 128 AG--RLREFHQIGVECFGSANPATDVETIAMAN---HLFETLGIKDITLHINSLGSPASR 182

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D           D +   S 
Sbjct: 183 AAYRQALIDYLTPMREQLSKDSQRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQ 242

Query: 249 VEQWTA-------PYAATSDVHNEKLFDSLPENKRVSARGIE-VGHIFYFGTKYSLPMSA 300
                              D +  +  D            ++        G +Y      
Sbjct: 243 AHFEAVKDMLADLEIPYVIDTNMVRGLDYYNHTIFEFMATVDKSELTICAGGRY----DG 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQ 359
                DG +       +G G        +    + +GI  P  VAP   + +  +    +
Sbjct: 299 LVSYFDGPETP----GFGFGLG---LERLLLILEKQGITLP--VAPEMDVYIAVLG---E 346

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +   L + G     D +G +I +QF  AD     + + +G   V   KV +K
Sbjct: 347 SANSKALALVQSLRRQGFKAERDYLGRKIKAQFKSADNFKAKVIMTLGESEVEAGKVTLK 406

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
           +  +    +   EE+ N      S 
Sbjct: 407 NNQSRHEIEARFEEISNDFPSLLSK 431


>gi|309388302|gb|ADO76182.1| seryl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 422

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 9/161 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +     +  G  E+  P + +AD    +G+   + K+M +L        
Sbjct: 169 GARLERALINFMLNLHTDEHGYKEVFPPFIANADSMTGTGQLPKFEKDMFKL---EGLDY 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I     LP         FR E     R   G++R  +F   + 
Sbjct: 226 YLIPTAEVPVTNMYRDEILDVEQLPEYLTAYSACFRAEAGAHGRDTRGIIRQHQFNKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
             F + PE S     K+      +  RL L    +   +G 
Sbjct: 286 VKF-VKPEDSYAELEKITADAEDVLQRLELPYRVVSLCTGD 325


>gi|299768961|ref|YP_003730987.1| seryl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298699049|gb|ADI89614.1| seryl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 423

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGSLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDTERL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +   +      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEDLTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 310 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 368


>gi|293375175|ref|ZP_06621462.1| histidine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292646212|gb|EFF64235.1| histidine--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 469

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 138/427 (32%), Gaps = 25/427 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDS 88
           M     KG Y  LP       NV ++IRE  +     E+  P  +S  L+  S     D 
Sbjct: 1   MNFNKPKGTYDVLPKDSARWQNVESLIREICSIFNYKEIRTPMFESTQLYHRSAGETSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KE     DR D+ M   P     +   +  +      +    + I   FR E R + G
Sbjct: 61  VSKETYDFKDRGDRMMTLRPEGTAGVVRSYIENKMYADQMVQKMFYIGPMFRYE-RQQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+ +      F             +    + ++  LGL++I ++  S  +G   S 
Sbjct: 120 --RYRQHIQFGTEVFGSADPSIDAE---VISLAVTLYKVLGLRNIKVKLNS--LGDTESR 172

Query: 209 EFIVLADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           E    A     +    +   D  +   +N        ++   E   +       +  E  
Sbjct: 173 ENYRAALLAHFEGHKEELCADCQVRLEKNPLRVLDCKVDRNKEIMQSAPQMIDHLTEEDK 232

Query: 268 FDSLPENKRVSARGIEV--------GHIFYFGTKYSLPMSATFKGAD------GKDHYVQ 313
              +   K + A GIE         G  +Y  T + +       G+       G+ + + 
Sbjct: 233 AYFMNVQKYLKAMGIEYEYDASLVRGFDYYTHTIFEIQAEIKGFGSQNTLCGGGRYNKLV 292

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               G     +   +               VA      + +    +  +    ++   L 
Sbjct: 293 AELGGPTVPAIGFGMGLERLLLALEAENIQVAGEDAVDLFLITLGEDAKVFGSRLLLDLR 352

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D +G+ +  QF  AD        I+G + +    + IK+  TG +E + +  
Sbjct: 353 SRGLACETDYLGKNLKGQFKQADRYHARYTAILGDEELQHGMINIKNNQTGTQESIPVGF 412

Query: 434 VINYASH 440
           VI+Y   
Sbjct: 413 VIDYIIE 419


>gi|76162547|gb|AAX30465.2| SJCHGC03807 protein [Schistosoma japonicum]
          Length = 106

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           P ++ ++ + +    C +   ++  RL   G  V  D D G  +  +     LL     +
Sbjct: 1   PRQVLVVPVVS---ACDEYAIEVKNRLHDAGFMVSVDTDPGRTLNKKIRNGQLLQNNFIL 57

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +VG K +++  V ++ R   +      E ++ +   RF  
Sbjct: 58  VVGEKEIANGTVNVRTRDNKVHG----EHLVEHVIERFRQ 93


>gi|2664208|emb|CAA10903.1| Glycyl-tRNA synthetase [Thermus thermophilus]
          Length = 506

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 112/340 (32%), Gaps = 63/340 (18%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI- 184
           R L F   Q     R+E+ PR  + R REF   +   F    E     Y   +    R+ 
Sbjct: 207 RKLGFGIAQSARPSRNEITPRNFIFRVREFEQMEIEYFVRPGE---DEYWHRYWVEERLK 263

Query: 185 -FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + R+GL                S E +V       ++                      
Sbjct: 264 WWQRMGL----------------SRENLVPYQQPPEELAH-----------------YAK 290

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           +   I+ ++         + N   FD     K   A GI          ++S    A   
Sbjct: 291 ATVDILYRFPHGLEELEGIANRTDFDLGSHTKDQEALGI---TARVLRNEHSTQRLAYRD 347

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINI 354
              GK     +     G  R V A++  +   + +              +AP K+++I +
Sbjct: 348 PETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPL 407

Query: 355 KAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV------- 406
             +     +  +++ ARL  +G   V ++D G  IG  +   D +G P  V V       
Sbjct: 408 VKNRPEITEYAKRLKARLLALGLGRVLYEDTGN-IGKAYRRHDEVGTPFAVTVDYDTIGQ 466

Query: 407 ---GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              G+  + D  V ++ R T  +  + ++E+  +   R  
Sbjct: 467 SKDGTTRLKD-TVTVRDRDTMEQIRLHVDELEGFLRERLR 505


>gi|291618410|ref|YP_003521152.1| HisS [Pantoea ananatis LMG 20103]
 gi|291153440|gb|ADD78024.1| HisS [Pantoea ananatis LMG 20103]
          Length = 424

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 123/420 (29%), Gaps = 39/420 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V  +++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDFLPADTAIWQRVEDVLKSVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M  +  R +  LG+    +R E   IG        
Sbjct: 122 YRQFHQIGVEVFGLQGPDIDAELI-MLNA--RWWKALGIAD-HVRLELNSIGSPE----- 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A+  +  V   +   +                    +                  D  
Sbjct: 173 ARANYRDALVAFLEQHKEALDEDCKRRMYSNPMRVLDSKNPDIQTLLNDAPQLGDYLDVE 232

Query: 272 PENKRVSARGI--EVGHIFYFGTK-------YSLPMSATFKGADG-KDHYVQMGSYGIGA 321
                   R +  + G  +    +       Y+  +      + G +      G Y    
Sbjct: 233 SREHFDGLRALLDDAGIAYTVNQRLVRGLDYYNRTVIEWVTDSLGSQGTVCGGGRYDGLV 292

Query: 322 M----RVVAAVIESSHDGKGIIWPDSVAP-------FKISLINIKAH-DQVCRDACEKIY 369
                R    V  +    + ++   +V P         + +I              EK+ 
Sbjct: 293 EQLGGRATPGVGFAMGMERLVLLVQAVNPEFEPARNVDVYVIASGQGVQSAAMQLAEKLR 352

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L ++     +     +   QFA AD  G  + +++G       +V IK    G ++ +
Sbjct: 353 DHLPEMKLMTNFGGGNFK--KQFARADKWGARVALVLGEDEQKAGQVVIKDLRNGEQQTL 410


>gi|256822347|ref|YP_003146310.1| seryl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256795886|gb|ACV26542.1| seryl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 422

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 86/224 (38%), Gaps = 26/224 (11%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           A+IA+ + +++ G++               K    +   + +      G  E+ VP + +
Sbjct: 155 AKIAASRFIVKKGLV--------------AKLHRALIQFMLDLHSKEHGYEEVYVPYMVN 200

Query: 77  ADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           A+    +G+   + +++ +    +++D+ +   PT E  +T++ R  I     LP  F  
Sbjct: 201 AESLTGTGQLPKFEEDLFKAQGKNQDDRPLYLIPTAEVPVTNLVRDEIIEADQLPLQFVA 260

Query: 135 IQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
               FR E     R   G++R  +F   +       PE S  +  ++     ++   L L
Sbjct: 261 HTPCFRSEAGSYGRDVRGLIRLHQFEKVELVHI-AKPEDSMEALERLIGHAEKVLQLLEL 319

Query: 191 KSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
               +   SG IG   +     E  + +     ++    +  DF
Sbjct: 320 PYRVVTLCSGDIGFGATKTYDIEVWLPSQDTYREISSCSNTGDF 363


>gi|77460821|ref|YP_350328.1| histidyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123603394|sp|Q3K7B7|SYH_PSEPF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|77384824|gb|ABA76337.1| Histidyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 429

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 141/436 (32%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP            +    +  G  ++ +P ++  +L+  S G   D   K
Sbjct: 6   QAIRGMNDILPEQTPVWRYFEGTVSRLLDNYGYKQIRMPIVEFTELFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H  +        + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHE-RPQKG--R 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F+L           + +   R++  LG++   ++ E   +G   S    
Sbjct: 123 YRQFHQIGLEVFNLDGPDIDAE---LIIMTWRLWGELGIRD-AVKLELNSLGTSESRGRY 178

Query: 212 VLA----------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E      K      + ++N D   ++     +  +    +    
Sbjct: 179 REALVEYLSAHHDKLDEDSQRRLKTNPLRVLDTKNADTQAVLVDAPKMADYLDDESRAHF 238

Query: 262 VHNEKLFDSLPEN---KRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKD 309
              +   D++           RG++     +F       G + ++     + G       
Sbjct: 239 KGLKARLDAVGIPYVLNPKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGG 298

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQVC-RDACEK 367
                  + +G  R+V  ++E+         P+ ++    + L       ++      E+
Sbjct: 299 KPTPGVGFAMGIERLVL-LLETLEQ-----IPEEISRQVDVYLCAFGEEAELAGLALAER 352

Query: 368 IYARLSKVGCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
           +  +L  +   V         G  +  F  AD  G    +I+G   ++   V  K  R  
Sbjct: 353 VRDQLPNLRLQV-----NAGAGSFKSQFKKADKSGALYALILGDDEMAQQVVGFKPLRGQ 407

Query: 424 GIREDMSLEEVINYAS 439
           G ++ ++ + +  + +
Sbjct: 408 GEQQSIAWDALAAHLA 423


>gi|307245732|ref|ZP_07527818.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306853434|gb|EFM85653.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
          Length = 435

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    +LP  +      FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|305662506|ref|YP_003858794.1| histidyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304377075|gb|ADM26914.1| histidyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 429

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/443 (13%), Positives = 138/443 (31%), Gaps = 62/443 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   ++P     +  +    +    R G  E+  PTL++  L+  +SG  +   + M   
Sbjct: 10  GFRDYIPPDSDIITWICDSFKIIVKRFGYKEIKTPTLENFKLFALKSG--EEIRESMFVF 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ ++ +   P     +  ++   +++    P   + I   FR +  P+FG  R REF 
Sbjct: 68  KDKAEREVALRPEVTPSVIRVYLRELRNI-PKPLRLFYIANVFRYDE-PQFG--RYREFT 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----------GGDL 206
                              ++       +  +G+K    +  +  I            D 
Sbjct: 124 QAGVEILGADGLNYDVELIEILE---EFYDSIGIKERMYKVNNVAIFRELAKRARLNEDE 180

Query: 207 SHEFIVLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                   D G          E         +++       D   II++     ++    
Sbjct: 181 IERMFHFLDKGRFNDVINIFKEKGAVKEAQVIEYLYRERQRDITAIINMLEGYNEYKEIQ 240

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS----------------LPMSA 300
                +            K         G  +Y G  +                   ++ 
Sbjct: 241 KHVETLMRYIDMGKAIGAKIYVDPAFARGIAYYTGIIFEVMVPNMSISIAGGGRYDNLTT 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + G +     +    + IG  R   A+   ++    + +P ++       + + ++D  
Sbjct: 301 VYGGEE-----LSSTGFAIGVERTFLAL--RNNIEIDLGYPKTL-------VLLLSNDIE 346

Query: 361 CRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +   L + G  + ++  +  +++      A   GF   +IVG K +  + V I
Sbjct: 347 GFTKMYNVVKMLRRQGISIQFEVLESAQRLSRWLEYASKQGFNYVIIVGRKEMEKNVVVI 406

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +      +E++ L+ +  +   +
Sbjct: 407 RDMKKWTQEEVPLDMLREFLVKK 429


>gi|293610923|ref|ZP_06693222.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826575|gb|EFF84941.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 425

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 135 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGSLARLQRALTQFMLDTHTLKNGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDTERL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 312 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 370


>gi|258649081|ref|ZP_05736550.1| glycine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260850716|gb|EEX70585.1| glycine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 513

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/484 (13%), Positives = 144/484 (29%), Gaps = 91/484 (18%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +   G +  +N+     +         + +         +W  SG  D++      L
Sbjct: 33  VYDYGQNGVELKNNIKQYWWQSMVLLHENIVGIDSAVFMHPTVWKASGHVDAFND---PL 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF----------------- 139
            D  D    Y      +   I +   K  + +     +    F                 
Sbjct: 90  IDNRDSKKRYRADV-LIEDQIAKYEEKIEKEVAKARKRFGDAFDEAQFCATNQRVIDNQT 148

Query: 140 -------RDE-----------------------LRPRFGVMRSREFLMKDAYSFDLTPEG 169
                  R E                       +         R+F +        T EG
Sbjct: 149 RRDALHKRYEEAMNANDLKALYQIIIDEEIVDPISGTRNWTEVRQFNLMFKTEVGSTAEG 208

Query: 170 SKHSYNK------MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   Y +      +FV+YL +    R+ L     +     IG    +E +        + 
Sbjct: 209 ASAIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQ-----IGKAFRNEIVARQFIFRMRE 263

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY-AATSDVHNEKLFDSLPENKRVSAR 280
           F   +   F  P    ++ +      +       + A     H+ +              
Sbjct: 264 FEQMEMQFFVKPGTEHEWFNRWKEWRMKWHQALGFGAECYRFHDHEKLAHYANAATDIEF 323

Query: 281 GIEVGHIFYFG----TKYSLPMSATFKG--------ADGKDHYVQMGSYGIGAMRVVAAV 328
            +  G     G    T Y L     F G           + +        IG  R+  +V
Sbjct: 324 KMPFGFKEVEGIHSRTDYDLRRHEEFSGKSIKYFDPETNESYTPYDIETSIGVDRMFLSV 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  ++  + +           P ++AP K++++ +   D    +   +I   L K   + 
Sbjct: 384 MCHAYTEEKLDNGETRVVLRLPAALAPVKLAVLPLVRKD-GLPEKAREIMNEL-KFHFNC 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +++  + IG ++  AD +G P  + +    + ++ V ++ R T  +E + +E++     
Sbjct: 442 KYEE-KDTIGKRYRRADAIGTPYCITIDHDTLKENTVTLRDRDTMTQERVPVEQLRALIE 500

Query: 440 HRFS 443
            + S
Sbjct: 501 DKVS 504


>gi|253682644|ref|ZP_04863441.1| histidine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253562356|gb|EES91808.1| histidine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 417

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 142/441 (32%), Gaps = 51/441 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP+       +   ++E        E+  P  +  +L+        D 
Sbjct: 1   MAIQAPKGTKDLLPMDSYKWHYIEGKLKELAGEYALKEIRTPIFEHTELFERGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++             F  +      LP   +     FR E      
Sbjct: 61  VQKEMYTFKDKGDRSITLKAEGTAPAARAFIENGLFNEALPIKMFYFTPVFRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-----------PMRA 197
             R R+        F  +          +    +R F   G+ ++             + 
Sbjct: 118 KGRLRQHHQFGVEVFGSSEASVDAE---IIGLAMRAFKEFGINNLELNINNIGCPECRKK 174

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +  +     +E+  L DT +T+    +      +  +N    +I     ++  +     
Sbjct: 175 YNDALREYFKNEYNELCDTCKTRY---ERNPMRLLDCKNKKCKEIGKDAPVILDYVCDDC 231

Query: 258 ATSDVHNEKLFDSLPENKR---VSARGIEVGHIFYF-----------GTKYSLPMSATFK 303
                + +   D+L    +      RG++      F           G +Y    +   +
Sbjct: 232 KNHFENLKTYLDALSIEYKVNPYIVRGLDYYTKTVFEIINNDITVCGGGRY----NGLIE 287

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              GK        +G+G  R++  + E++     I  P    P +I +      ++   +
Sbjct: 288 EIGGKPTPAV--GFGMGIERLILTLGENN-----IEIPK---PKEIDIYVGSMGERGKIE 337

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K G     D M + + +Q   A+ +     +I+G   + + K  +K    
Sbjct: 338 -SFKVVNELRKKGIKAECDHMNKSVKAQMKYANKIEALYSMIIGETEIEEGKANLKRMED 396

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G + ++SL  +   A+   +N
Sbjct: 397 GQQFEVSLNNLDEIATMILNN 417


>gi|165976289|ref|YP_001651882.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|190150196|ref|YP_001968721.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|303252866|ref|ZP_07339025.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247856|ref|ZP_07529892.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307250109|ref|ZP_07532071.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|307263534|ref|ZP_07545149.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|238687564|sp|B0BPF3|SYS_ACTPJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238692394|sp|B3H1K7|SYS_ACTP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|165876390|gb|ABY69438.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|189915327|gb|ACE61579.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|302648296|gb|EFL78493.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306855658|gb|EFM87825.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306857840|gb|EFM89934.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306871177|gb|EFN02906.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 435

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    +LP  +      FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|94496665|ref|ZP_01303241.1| histidyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94424025|gb|EAT09050.1| histidyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 419

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 126/402 (31%), Gaps = 44/402 (10%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              G   + VP  ++  ++  S     D   KEM    DR   ++   P     ++  + 
Sbjct: 40  RLYGFQRVEVPVFEATAVFARSLGESTDVVSKEMYTFEDRGGDSITLRPEFTAGISRAYI 99

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +     +  P         FR E RP+ G  R R+F   DA        G+      M  
Sbjct: 100 TEGW-QQYAPLKVATHGPLFRYE-RPQKG--RFRQFHQLDAEIIGAGEPGADVELLVMGD 155

Query: 180 SYLRIFHRLG----LKSIPMRAESG-----------PIGGDLSHEFIVLADTGETQVFCS 224
             LR     G    L ++   A                 GDLS + +        ++  S
Sbjct: 156 QLLRELKIEGVTLTLNTLGDAASRDAWRAALIAHFEANRGDLSEDSVERLAKNPLRILDS 215

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR---VSARG 281
           KD  D PI     D D  ++            A           D+            RG
Sbjct: 216 KDPRDRPIADSAPDIDAYLT----------DEARGFFEKVTAGLDAAGVAWERNARLVRG 265

Query: 282 IEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           ++      F F T   L    T  G  G  +   + + G  A   V            + 
Sbjct: 266 LDYYRHTAFEFVTD-RLGAQGTVLG--GGRYDGLIENLGGPATPAVGWAAGIERLAMLVD 322

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P+   P  + LI +    +        I A L + G        G  +  +   A+  G
Sbjct: 323 APEVEKP-SVVLIPMG---EAAEARATGIIADLRRAGIACDMGYRGN-MKKRMQRANASG 377

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               +I+G   ++  +  +++  TG ++ ++L+ ++   +  
Sbjct: 378 ADWAIILGDDELAQGEAAVRNLGTGEQQAVALDALVGTVTAL 419


>gi|13471180|ref|NP_102749.1| seryl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|30173204|sp|Q98LC8|SYS_RHILO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|14021924|dbj|BAB48535.1| seryl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 434

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 11/210 (5%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P +   ++   + +   + +++        + +   PT
Sbjct: 181 RAIGQFMLDLHTTEHGYEEVIPPLMVRDEVLFGTNQLPKFEEDLFFTPHGEGR-LGLIPT 239

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I ++  LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 240 AEVPLTNLVREEITAHEKLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFYKVELVSI-T 298

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             + S   + +M      +  RL L    M   +G +G         E  +       ++
Sbjct: 299 DQDSSLAEHERMTQCAEEVLKRLELPFRTMVLCTGDMGFGARKTYDIEVWLPGQNAYREI 358

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  DF     +  + D     +    
Sbjct: 359 SSCSVCGDFQARRMDARYKDKDGKGNRFVH 388


>gi|282880410|ref|ZP_06289121.1| glycine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305766|gb|EFA97815.1| glycine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 514

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 118/361 (32%), Gaps = 66/361 (18%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM  L+D  +K  +   T + +  +           LPF   QI   FR+E+  R  + R
Sbjct: 201 EMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F + P      + +     +     LG              G  ++ F 
Sbjct: 261 MREFEQMEMQ-FFVKPGTELEWFKRWKELRMAWHQALGF-------------GAENYRFH 306

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                           +   I  +    +     VH+   FD  
Sbjct: 307 ----------------------DHEKLAHYANAATDIEFKMPFGFKEVEGVHSRTNFDLS 344

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                K+S      F     + +   +    IG  R+  +V+  
Sbjct: 345 QH------------------EKFSGKSIKYFDPETNESYVPYVIETSIGVDRMFLSVMCH 386

Query: 332 SHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           S+  + +           P ++AP K +++ +    +   +   +I   L K   +  +D
Sbjct: 387 SYQEEELEGGDKRIVLRLPAALAPVKCAVMPLVRK-EGLPEKAREIVNLL-KFHFNTSYD 444

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  + IG ++   D +G P  V V    + D+KV ++HR T  +E + + E+  +   + 
Sbjct: 445 E-KDSIGKRYRRQDAVGTPYCVTVDFDTLKDNKVTLRHRDTMQQERIDISELCAHIEDKV 503

Query: 443 S 443
           S
Sbjct: 504 S 504


>gi|262305759|gb|ACY45472.1| glu- + pro-tRNA synthetase [Loxothylacus texanus]
          Length = 134

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      ++  D +    V   S+GI   R +  V+    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSRMFDIGYEHPDTQQRCLVYQNSWGIT-TRTLGVVVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  ++ ++             Q   D C ++  RL++V      D       
Sbjct: 74  GLVLPPRIAAIQVVIVPCGVTSSLSDESRQNLLDMCVQLQKRLAEVDIRCHADLRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|262281252|ref|ZP_06059034.1| seryl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257483|gb|EEY76219.1| seryl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 425

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 135 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGSLARLQRALTQFMLDTHTLKNGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDTERL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +   +      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEDLTAHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 312 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 370


>gi|325134782|gb|EGC57419.1| seryl-tRNA synthetase [Neisseria meningitidis M13399]
          Length = 431

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRLKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385


>gi|268590183|ref|ZP_06124404.1| serine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291314463|gb|EFE54916.1| serine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 430

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 21/243 (8%)

Query: 17  DAEIASHKLM--LRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +  L  G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVKDHVSLGELSGGLDFPAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEQHGYQE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
           + VP L + D    +G+   +G+++       ++A        PT E  +T++ R  I  
Sbjct: 193 LYVPYLVNHDTLYGTGQLPKFGEDLFHTKPLEEEADSSTYALIPTAEVPVTNLVRDEILD 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 253 EDSLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VHPEKSMDALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++   L L    +   +G IG         E  + A     ++    +  DF      
Sbjct: 312 AEKVLQLLNLPYRKVILCTGDIGFGSRKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQ 371

Query: 237 TDF 239
             F
Sbjct: 372 ARF 374


>gi|183599737|ref|ZP_02961230.1| hypothetical protein PROSTU_03241 [Providencia stuartii ATCC 25827]
 gi|188021997|gb|EDU60037.1| hypothetical protein PROSTU_03241 [Providencia stuartii ATCC 25827]
          Length = 430

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 148/439 (33%), Gaps = 45/439 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP   +    + A+++         E+  P ++   L+  + G   D   K
Sbjct: 6   QAVRGMNDYLPADTRVWQKIEAVLKNILQGYSFSEIRTPIVEHTPLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           EM    DR+D           P +          H   Y       + +   FR E RP+
Sbjct: 66  EMYTFIDRHDTDKAEVSLTLRPENTAGCVRAGIEHGLLYNQE-QRLWYLGPMFRHE-RPQ 123

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F    A  F L           M     R +  LG+    +  E   IG   
Sbjct: 124 KG--RYRQFHQLGAEVFGLAGPDIDAELIMM---TARWWRALGISE-HVTLELNSIGSLD 177

Query: 207 SHEFIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPY 256
           +      A     +    K   D            + S+N D   +++    +  +    
Sbjct: 178 ARANYREALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNQDVQALLNDAPELFDYLDDE 237

Query: 257 AATSDVHNEKLFDSLPEN---KRVSARGIEVG--HIFY-----FGTKYSLPMSATFKGAD 306
           +        KL D+        +   RG++     +F       G++ ++     + G  
Sbjct: 238 SREHFDGLCKLLDAAGIQYRVNQRLVRGLDYYNRTVFEWVTTALGSQGTVCAGGRYDGLV 297

Query: 307 GKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRD 363
           G+          + +G  R+V   +       G I  +SV    + L +   + Q     
Sbjct: 298 GQLGGKPTPAVGFAMGMERMV---LLVESLNPGFIADESV--TDVYLASFGENSQKSALL 352

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++   L      V  +  G     Q A AD  G  + +I+G + +++ +V +K   T
Sbjct: 353 LAEQVRDALPS--LRVMTNHGGGNFKKQLARADKQGAKVALILGEEEIANHQVGVKDLRT 410

Query: 424 GIREDMSLEEVINYASHRF 442
           G +E +S +++    +   
Sbjct: 411 GEQETVSQQQLAQRLAELL 429


>gi|222055711|ref|YP_002538073.1| histidyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221565000|gb|ACM20972.1| histidyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 415

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 136/419 (32%), Gaps = 43/419 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP   +   ++ A  R      G  E+ VP L+  +L+  S     D   KEM 
Sbjct: 7   KGFNDILPGEVEKWQHIEAAARRIFGLYGFSEIRVPILEKTELFCRSIGDSTDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ +  +   P     +   F  H     +     Y +   FR E RP+ G  R R+
Sbjct: 67  SFVDKGENKVTMRPEGTASIMRAFIEHKLYVADPVAKLYYMGPMFRYE-RPQKG--RYRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F    A    +           M       F  LGL    ++  S       P    +  
Sbjct: 124 FHQIGAEVTGIADPKVDAQVLTML---CHFFAELGLTEPHLQINSLGCPECRPKYRQVLK 180

Query: 209 EF------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           +F       +  D            +D          +   S+   +      + A +  
Sbjct: 181 DFLKSRIGKLCDDCRRRIDTNPLRALDCKAAGCKEATEGAPSVLDYLCHDCNDHFAKTRC 240

Query: 263 HNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
           H E +  S   N R+  RG++              G++ ++     + G  +D     + 
Sbjct: 241 HLESVGTSYSINTRM-VRGLDYYTRTTFELVTGLLGSQSAVAAGGRYDGLISDLGGPSLP 299

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              + +G  RV   + E     +   +             I A  +  ++   ++ + L 
Sbjct: 300 GIGFAMGVERVALLLAEKDFRKRPDFF-------------IAALGETAQEEAFRLMSGLQ 346

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + GC V  D  G+ + SQ   AD       +I+G   +      +K+  +G + D+ L 
Sbjct: 347 QKGCSVEMDFAGKSLKSQMRRADKFNAHFTLILGEDELVKGTAALKNMDSGTQTDVRLN 405


>gi|256832756|ref|YP_003161483.1| glycyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256686287|gb|ACV09180.1| glycyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 461

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 108/369 (29%), Gaps = 86/369 (23%)

Query: 98  DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           D         P T + +  +       S    PF   QI   FR+E+ P   + R+REF 
Sbjct: 152 DNEQGLHYLRPETAQGIFVNFANVQTASRLKPPFGIGQIGKSFRNEITPGNFIFRTREFE 211

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +                                                 EF V   T
Sbjct: 212 QMEL------------------------------------------------EFFVKPGT 223

Query: 217 GET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            E   Q +       +     N D   +           +      +           E 
Sbjct: 224 DEEWHQRWIDARKAWYVDLGINPDNLRLYEHPQEKLSHYSKRTVDIEYRFGFTGGEWGEL 283

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           + V+ R           T Y L       G D        G  ++  +     G  R V 
Sbjct: 284 EGVANR-----------TDYDLRTHTEHSGKDLSFFDQAEGTRYFPYVIEPAAGLTRSVM 332

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           A +  ++                 +     +AP K++++ + + +         + A L 
Sbjct: 333 AFLVEAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKVAVLPL-SRNADLSPKARDLAADLR 391

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +   +V +DD G  IG ++   D +G P  + V    + D+ V I+HR +  +  ++L++
Sbjct: 392 QFW-NVDFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDNAVTIRHRDSMEQHRVALDQ 449

Query: 434 VINYASHRF 442
           V  Y +   
Sbjct: 450 VRTYLATHL 458


>gi|325295343|ref|YP_004281857.1| Seryl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065791|gb|ADY73798.1| Seryl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 428

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G K    +   + +      G  E+  P L +      +G+   + +++ ++ 
Sbjct: 166 FVIYKKWGAKLERALINFMLDLHTSNHGYEEIIPPFLVNTKTMTGTGQLPKFEEDLYKI- 224

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++ +   PT E  +T+I    I   + LP  +      FR E     R   G+MR  
Sbjct: 225 --ENEDLWLIPTAEVPLTNIHAGEILPEKELPKYYTAYTPCFRREAGAHGRDVRGIMRLH 282

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +     + PE S     K+     ++   LGL    +   +G +G   +     E
Sbjct: 283 QFNKVELVKI-VHPETSYEELEKLVREAEKVLQLLGLHYRVVELCTGDLGFSAAKTYDIE 341

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             + +     ++    +  DF        F D       V 
Sbjct: 342 VWIPSQNKYREISSCSNCEDFQARRAKIRFRDKNGKTRFVH 382


>gi|329910977|ref|ZP_08275424.1| Seryl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546036|gb|EGF31113.1| Seryl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 431

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 14/217 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRND 101
            +    +   + +      G  E   P + +AD    +G+   +  E+  +     +   
Sbjct: 169 ARLHRALAQFMLDTHTGEHGYTECYTPYIVNADSLRGTGQLPKFEAELFAVKKGGQEGEG 228

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           + +   PT E  +T+I R  I +  +LP         FR E     R   G++R  +F  
Sbjct: 229 ETLYLIPTSEVSLTNIVRDQIIAIDDLPVKMTAHTPCFRSEAGSYGRDTRGMIRQHQFDK 288

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVL 213
            +     + PE S     +M      I  +LGL    +   +G IG   +     E  + 
Sbjct: 289 VEMVQV-VHPEQSFAVLEEMVGHAEVILQKLGLPYRVVSLCTGDIGFSATKTYDIEVWLP 347

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           A     ++    +   F      T F +      ++ 
Sbjct: 348 AQKTYREISSLSNCDSFQARRMQTRFRNAQGKPELLH 384


>gi|188588876|ref|YP_001920364.1| histidyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499157|gb|ACD52293.1| histidyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 417

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 125/422 (29%), Gaps = 35/422 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+     G  E+  P  +  +L++       D   K
Sbjct: 6   QAPKGTKDMLPQDAYKWHYVENTFRDVVKAYGIREIRTPMFEHTELFLRGVGDTTDIVQK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+ ++++   P         F  +       P   + I   FR E        R
Sbjct: 66  EMYTFNDKGNRSVTLKPEGTAPAVRAFIENRLFNEAQPTKLFYITPTFRYE---NVQKGR 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP----------MRAESGP 201
            R+F       F            K+    +    +LGLKS+            RA+   
Sbjct: 123 LRQFHQCGIEIFGSKEPTMDVEAIKVA---MDTLSKLGLKSLSLHINNLGCPTCRAKYNE 179

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E            F                     +   +           + 
Sbjct: 180 ALKKFLEENYENLCDTCKSRFEKNPMRILDCKERKCHEITKNAPQILDYVCEECETHFNK 239

Query: 262 VHNEKLFDSLPEN-KRVSARGIEVGH--IFYF-GTKYSLPMSATFKG---ADGKDHYVQM 314
           V        +P    +   RG++     IF      +++     +       G      +
Sbjct: 240 VKEYLDVLEIPYIVDQGIVRGLDYYTKTIFEIINDDFTVCGGGRYDKLVEELGGPEMPAV 299

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G + IG  R++  +     + +GI  P+      +  + I A     +    K+   L  
Sbjct: 300 G-FAIGEERIIMTL-----ENEGIEIPNEN----MVDLYIGARGDAEKKYAFKLAHDLRS 349

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G     + MG  I ++   A+ +G     I+G   + ++++ +K    G    +SL+ +
Sbjct: 350 LGIKCEINHMGRSIKAEMKYANKIGSKFTTILGEDELENNRINLKRMEDGEIFTLSLDSI 409

Query: 435 IN 436
             
Sbjct: 410 EE 411


>gi|148241646|ref|YP_001226803.1| seryl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|166223304|sp|A5GRE1|SYS_SYNR3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|147849956|emb|CAK27450.1| Seryl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 425

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    + + + +  +  G  E+  P L ++     SG+   + +E  R AD +   + 
Sbjct: 173 GARLERALISFMLDLHSTKGYTEVMPPILVNSASLTGSGQLPKFAEESFRCADDD---LW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  + +   LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPLTSLHRDEVIAVEQLPLKYAAYTPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            F   PE S  ++ ++ +    +   L L    +   +G +G   
Sbjct: 290 WFCH-PEKSAEAHEQLTLDAEAVLEALELPYRRLELCTGDMGFSA 333


>gi|258627190|ref|ZP_05721978.1| histidyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|262165072|ref|ZP_06032809.1| histidyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|258580492|gb|EEW05453.1| histidyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|262024788|gb|EEY43456.1| histidyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 422

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 149/439 (33%), Gaps = 54/439 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  +++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F +           M     R++  LG+    +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGIDGPDVDAELIMM---TARLWRELGISE-HVRLELNSIGSLEARA 175

Query: 210 FIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A     + + S    D            + S+N D   I+     +  +    +  
Sbjct: 176 NYRSALIEYLEQYQSVLDEDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQ 235

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--------- 305
                 +L D+        +   RG++     +F + T+ SL    T  G          
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQ 294

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        + +G  R+V  ++  +     +          + +  + A  +    A
Sbjct: 295 LGGKPTPAV--GFAMGLERLV--LMMETLGNTEVR-------RSVDVYMVTAG-EGTMMA 342

Query: 365 CEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K+  +L +   G  V     G     QF  AD +G  + +++G   V+   V +K   
Sbjct: 343 GMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLA 402

Query: 423 TGIREDMSLEEVINYASHR 441
            G +  ++  EV    +H 
Sbjct: 403 GGDQSTVAQAEVAKLLTHL 421


>gi|225871432|ref|YP_002747379.1| histidyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|254782346|sp|C0MB21|SYH_STRE4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225700836|emb|CAW95552.1| histidyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 426

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 142/440 (32%), Gaps = 49/440 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP+       V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPVAAAKWQYVEGVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F RLG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGSANPATDVETIAM--AYH-LFERLGIKEVTLHLNSLGNAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D    +      D +   S 
Sbjct: 175 AAYRQALIDYLSPMRETLSKDSQRRLDENPLRVLDSKEKEDKIAVANAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA- 305
                            ++            RG++     IF F T+          G  
Sbjct: 235 AHFDAVRSML-------EVLAIPYVIDTNMVRGLDYYNHTIFEFITEVDQSELTICAGGR 287

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG   Y    +       +    +    D +G+  P       + +  + A       A
Sbjct: 288 YDGLVEYFGGPATPGFGFGLGLERLLLILDKQGVELPVEEG-LDVYIAVLGA---YANVA 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   + + G  V  D +G +I +QF  AD     + + +G   +   +  +KH  T 
Sbjct: 344 ALALTQAIRRQGFTVERDYLGRKIKAQFKSADAFKAKVVITLGESEIKTGQAVLKHNQTR 403

Query: 425 IREDMSLEEVINYASHRFSN 444
               +S +++    +  F+ 
Sbjct: 404 QEMTVSFDQIQTNFASIFAE 423


>gi|328947281|ref|YP_004364618.1| glycyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447605|gb|AEB13321.1| glycyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 484

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/475 (13%), Positives = 144/475 (30%), Gaps = 61/475 (12%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G ++Q S       G + + PLG +   N+         +     + +     Q 
Sbjct: 18  LCKRRGFVYQASEIYGGMAGAWDYGPLGVEFKRNIQNEWWHYMTQLHDDVVGLDSAIFQH 77

Query: 77  ADLWVESGRYDSYGKEMLRLAD----------RNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
              W  SG    +   M+   +            D     G T  + +  +    +K++ 
Sbjct: 78  HTTWEASGHVGHFSDPMIDCTECKARFRADQLIEDYFDKTGETPSKPVDTMSHEEMKAFI 137

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +              ++R    + ++ +  +  +A    L PE  +  +           
Sbjct: 138 DEKINCPTCGKHSWTDVREFNLMFKTHQGPVATEASLVYLRPETCQGIFTDFKNIVQS-- 195

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFI--------VLADTGETQVFCSKDFMDFPIPSENT 237
           +R+ +     +     +G    +E I           +  E + FC     D        
Sbjct: 196 NRMKIPFGVAQ-----VGKSFRNEIIFKNFIFRTCEFEQMEMEYFCKPGTEDETFARWRK 250

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVH---NEKLFDSLPENKRVSARGIEVGHIFYFGT-- 292
           D  +      I E     +      H   +                GI     F      
Sbjct: 251 DRWNFYLKYGIAEDHLNWHHHDKLAHYAKDAYDIQYKFPIGFEEIEGIHSRTDFDLSQHE 310

Query: 293 KYSLP-MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------I 338
           +YS   M    +    K +   +     G  R     +  +++ +              +
Sbjct: 311 QYSKKDMHYIDQDDGNKRYIPYVVETSAGLNRNFLMFLCEAYEEQNVAKEGEPEDFRTVL 370

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +AP  ++++ +   D +  +  ++I   L +      +D  G  IG ++   D +
Sbjct: 371 HLDPRLAPVTVAVLPLMKKDGLA-EKAKEIQHILKE-DFVTDYDQSG-TIGKRYRRQDEI 427

Query: 399 GFPLQVIVGSKFVSD-----SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G P  V V    +       + V ++ R +  ++ +SL+++I +      +  PV
Sbjct: 428 GTPFCVTVDHDTLDSSSADFNTVTVRFRDSMEQKRVSLDDLIPFIQKEIKSYVPV 482


>gi|149908479|ref|ZP_01897142.1| seryl-tRNA synthetase [Moritella sp. PE36]
 gi|149808642|gb|EDM68577.1| seryl-tRNA synthetase [Moritella sp. PE36]
          Length = 428

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 19/232 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+  + +    G    +  GQ A     +   + +      G  E
Sbjct: 133 DFEIKDHVDVGEALNGLDFKTAVKISGSRFIVMRGQVARMHRAIAQFMLDTHTEEHGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           + VP L +AD    + +   +G+++          + +   P+ E  +T+  R  I    
Sbjct: 193 LYVPYLVNADSLYGTAQLPKFGEDLFHTKPATEEGQGLSLIPSAEVPVTNTARDTITDEA 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     R   G++R  +F   +       PE S  +  +M     
Sbjct: 253 DLPVRLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQL-AHPEKSYEALEEMCQHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            I  +L L    +   +G +G   +     E  V A     ++    +  DF
Sbjct: 312 NILIKLNLPYRVVTLCTGDMGFSAAKTYDLEVWVPAQKTYREISSISNCEDF 363


>gi|295400623|ref|ZP_06810600.1| glycyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977204|gb|EFG52805.1| glycyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 460

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/441 (14%), Positives = 141/441 (31%), Gaps = 50/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML--- 94
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGTELKNNIKRAWWKKFVQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDCK 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +   R+    +     EE   ++    +   + +     +  +   +     F  +R  +
Sbjct: 92  QCKARHRADKLIESALEEKGIEMVVDGLPFEK-MEELIKEHNIACPECGSHDFTNIR--Q 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRL--GLKSIPMRAESGPIGGDL 206
           F +       +T   +   Y +      +FV++  +   +   L     +     IG   
Sbjct: 149 FNLMFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQ-----IGKSF 203

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDVH 263
            +E      T  T+ F   +   F  P E   + D                        H
Sbjct: 204 RNEITPGNFTFRTREFEQMELEFFCKPGEELKWFDYWKQFCKQWLLSLGMKEENIRLRDH 263

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKGAD--------GKDHY 311
            ++                  G    +G    T Y L     + G D         + + 
Sbjct: 264 TKEELSHYSNATTDIEYKFPFGWGELWGIASRTDYDLKQHMEYSGEDFRYIDQETNERYI 323

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RV  A +  ++D + +             ++AP+K ++  +        
Sbjct: 324 PYCIEPSLGADRVTLAFMIDAYDEEELEDGTTRTVMRLHPALAPYKAAVFPLSKK---LA 380

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    I+A LSK    V +D+ G  IG ++   D +G P  +        D  V ++ R 
Sbjct: 381 EGARNIFADLSKH-FMVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSEQDGMVTVRDRD 438

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + + ++ ++   +  
Sbjct: 439 TMEQVRIPISQLKSFLEEKVQ 459


>gi|116492878|ref|YP_804613.1| histidyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
 gi|122265658|sp|Q03F51|SYH_PEDPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116103028|gb|ABJ68171.1| histidyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
          Length = 424

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 128/443 (28%), Gaps = 49/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   K    V    RE        E+  P  +  +++  S     D 
Sbjct: 1   MKYQKPKGTADILPPFSKEWQFVEQNARETFALYNYEEIRTPIFEKFEVFSRSAGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+  + +   P     +   F            P   Y +   FR E RP+
Sbjct: 61  VTKEMYDFDDKGGRHIALRPEGTAGVVRAFVENKLYGPEHQKPVKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP------------ 194
            G  R REF      +F             M + +L+     GLK +             
Sbjct: 120 SG--RLREFHQIGVEAFGSDSPKIDVETIMMGMDFLKKLKVSGLKLVINTLGDKESRDRY 177

Query: 195 ---MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +     P   +LS +          +V  SKD  D  I     +  D ++ ++    
Sbjct: 178 RQALIDYLEPHFEELSDDSKARLHKNPLRVLDSKDKNDQKIVENAPEILDFLTEDAQKHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKD 309
            +                          RG++     IF         M A      G  
Sbjct: 238 TSVKE-------ELDTLGVDYVVDSSMVRGLDYYNHTIF-------EIMIADSPLGKGDV 283

Query: 310 HYVQMGSYGIGAMRV---------VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                G Y      +             +E            ++   ++    +   D V
Sbjct: 284 TICAGGRYNGLVEELGGPEVSGVGFGLGVERLLLLLNAETQTTLQSKQLDFYVVGIGDLV 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+   L ++      D +  +  +QF  AD L     V +G   ++D   ++K 
Sbjct: 344 QNDV-LKVVHELRQMNFVTEQDYLDRKPKAQFKSADKLNAKYVVTIGESEMNDRIFKLKD 402

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             +G    ++L E IN       
Sbjct: 403 MHSGEERTVALSE-INTLKDLLK 424


>gi|269956954|ref|YP_003326743.1| glycyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305635|gb|ACZ31185.1| glycyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 466

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 143/445 (32%), Gaps = 61/445 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           + + PLG +  +N+     +    R   + +    +    +WV SG    +   +     
Sbjct: 38  WDYGPLGVELKENIKRQWWKAMTRRDDVVGLDSSVILPRPVWVASGHVGVFTDPLTECLS 97

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE-LRPRFGVMRSREFLM 157
            + +  +        M +          + P       +   +   R ++     R+F M
Sbjct: 98  CHKRYRVDQ------MQEAVAEKKG--LDNPDDVALDTIACPNCGTRGQWT--EPRDFNM 147

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEFI 211
                     + S   Y +   +   IF  +   ++     S P      IG    +E  
Sbjct: 148 MLKTYLGPVEDESGLHYLR-PETAQGIF--VNFANVAAATRSKPPFGIAQIGKSFRNEIT 204

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T+ F   +   F  P  + ++                    +  H E      
Sbjct: 205 PGNFIFRTREFEQMEMEFFVKPGTDAEWHQYWIDQRTAWYTDLGIDPENLRHYEH---PA 261

Query: 272 PENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDH 310
            +    S R +++ + F F              T + L       G D         + +
Sbjct: 262 EKLSHYSTRTVDIEYRFGFQGSEWGELEGIANRTDFDLKTHTEHSGKDLGYRDPVTNEKY 321

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAH 357
           +  +     G  R + A +  ++D                +     +AP K +++ + + 
Sbjct: 322 FPYVIEPAAGLTRSLMAFLVEAYDEDEAPNTKGGVDKRTVLHLDPRLAPVKAAVLPL-SK 380

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   EK+ A L +   +V +D + + IG ++   D +G P  V V    + D  V 
Sbjct: 381 STDLLPTAEKLAAELRQHW-NVDYD-VTQAIGKRYRRQDEIGTPFCVTVDFDTLDDQAVT 438

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           I+HR T  +E ++L++V +Y + R 
Sbjct: 439 IRHRDTMAQERVALDQVASYLAARL 463


>gi|194332877|ref|YP_002014737.1| glycyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|194310695|gb|ACF45090.1| glycyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 488

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 151/475 (31%), Gaps = 69/475 (14%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I   S         + + PLG +   N+  +      R     + +    + +
Sbjct: 25  LAKRRGFIFPSSEIYGGLSSCFDYGPLGSEMKKNIKDLWWTSMTRKHQNIVGIDASIMMN 84

Query: 77  ADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEE-----VMTDIFRSHIKSYR--- 126
             +W  SG   S+   M+  +   R  +A      H E       TD  +    SY    
Sbjct: 85  PTVWEASGHVSSFNDPMIDDKTTKRRYRADHLIENHIEKLRRDGKTDEAQRISSSYEQAA 144

Query: 127 ---NLPFTFYQIQLKFRDELR----PRFGVMRSREF----------LMKDAYSFDLTPEG 169
              +    FY I +   +E++            R+F          L   A S  L PE 
Sbjct: 145 DAEDSNKAFYDIIIA--EEIKAPDTGSSDWTEVRQFNLMFKCNMGALADSAGSVYLRPET 202

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           ++  +       +R  +R+ +     +     IG    +E +          F   +   
Sbjct: 203 AQGIFVNFHN--VRESNRMKVPFGIAQ-----IGKAFRNEIVKGNFIFRMVEFEQMEMQY 255

Query: 230 FPIPSENTDFDDIISLNSIVEQWTA------PYAATSDVHNEKLFDSLPENKRVSARGIE 283
           F  P    +  +                                 D   + K     GIE
Sbjct: 256 FVKPGTQKETFEAWREERFNWYKERLGLTPGKLHWYKHDKLAHYADLAYDIKFEFPFGIE 315

Query: 284 VGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                +  T + L     F G +         + +   +     GA R+  A++  ++  
Sbjct: 316 EIEGIHSRTDFDLKQHQEFSGKNMEYIDQATNERYIPYVVETSAGADRLFLALLCDAYTE 375

Query: 336 KGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             I         +  ++AP K +++ +    ++  +   K    L++    V +DD G  
Sbjct: 376 DVIDGEERVMMKFSPTIAPVKAAVLPLMKKGEM-GEKASKFRNDLAEQ-FLVQYDDAG-S 432

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           IG ++   D +G P    V  + + D  V +++R T  ++ M + +V  + +   
Sbjct: 433 IGKRYRRQDEIGTPFCFTVDHQTLEDDTVTVRYRDTAEQQRMEMSKVPEFLAAEI 487


>gi|47458927|ref|YP_015789.1| seryl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|67461764|sp|Q6KIJ8|SYS_MYCMO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|47458255|gb|AAT27578.1| seryl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 421

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 95/262 (36%), Gaps = 27/262 (10%)

Query: 10  ILQENPR------DAEIASHKLMLRTGMIHQHSKG-------IYSWLPLGQKALDNVNAI 56
           IL+E P+       A+   +++ +   +I   S+G          +   G K +  + + 
Sbjct: 124 ILKEFPKIGRGLVKAKKPHYEIGVEKDLIDF-SRGAKLSGSRFIVYKNAGAKLIRALESF 182

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           + +   + G  E+  P L ++ +   +G+   + +++ ++       +   PT E  +T+
Sbjct: 183 MLDTHEKNGYSEIMPPFLVNSKMMYGTGQLPKFKEDLFKI---EGHDLYLIPTAEVPVTN 239

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +F + I         F      FR E     R   G++R  +F   +   F    +  + 
Sbjct: 240 LFNNEIID-LEKNSKFSSFTNCFRSEAGSAGRDTKGIIRLHQFNKVELVEFASEQKSLR- 297

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFM 228
           ++N +  +   +   L +    +   +G +G      +  E  + ++    +V     F 
Sbjct: 298 AFNSVLKNAKYLLELLEIPYREVLLCTGDLGFSSRKTIDLELWLPSEQRYREVSSVSYFG 357

Query: 229 DFPIPSENTDFDDIISLNSIVE 250
           DF        + D       V 
Sbjct: 358 DFQSRRSMIRYRDENKNTQYVH 379



 Score = 37.2 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIW 340
           EV  + YFG   S      ++  +    YV  +   G+   RV+AA++E   +  G I  
Sbjct: 349 EVSSVSYFGDFQSRRSMIRYRDENKNTQYVHTINGSGLAIDRVLAAILEQYQNDDGSISV 408

Query: 341 PDSVAPF 347
           P  + P+
Sbjct: 409 PKVLIPY 415


>gi|325842216|ref|ZP_08167633.1| histidine--tRNA ligase [Turicibacter sp. HGF1]
 gi|325489683|gb|EGC92042.1| histidine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 469

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 139/427 (32%), Gaps = 25/427 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDS 88
           M     KG Y  LP       NV ++IRE  +     E+  P  +S  L+  S     D 
Sbjct: 1   MNFNKPKGTYDVLPKDSARWQNVESLIREICSIFNYKEIRTPMFESTQLYHRSAGETSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KE     DR D+ M   P     +   +  +      +    + I   FR E R + G
Sbjct: 61  VSKETYDFKDRGDRMMTLRPEGTAGVVRSYIENKMYADQMVQKMFYIGPMFRYE-RQQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+ +      F             +    + ++  LGL++I ++  S  +G   S 
Sbjct: 120 --RYRQHIQFGTEVFGSADPSIDAE---VISLAVTLYKVLGLRNIKVKLNS--LGDTESR 172

Query: 209 EFIVLADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           E    A     +    +   D  +   +N        ++   E   +       +  E  
Sbjct: 173 ENYRAALLAHFEGHKEELCADCQVRLEKNPLRVLDCKVDRNKEIMQSAPQMIDHLTEEDK 232

Query: 268 FDSLPENKRVSARGIEVGHIFYF--GTKY----SLPMSATFKGADGKDHYVQMGSYGIGA 321
              +   K + A GIE  +      G  Y       + A  +G   ++     G Y    
Sbjct: 233 AYFMNVQKYLKAMGIEYEYDASLVRGFDYYTHTIFEIQAEIEGFGSQNTLCGGGRYNKLV 292

Query: 322 MRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +    + +   G G              VA      + +    +  +    ++   L 
Sbjct: 293 AELGGPTVPAIGFGMGLERLLLALEAENIQVAGEDAVDLFLITLGEDAKVFGSRLLLDLR 352

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D +G+ +  QF  AD        I+G + +    + IK+  TG +E + +  
Sbjct: 353 SRGLACETDYLGKNLKGQFKQADRYHARYTAILGDEELQHGMINIKNNQTGTQESIPVGF 412

Query: 434 VINYASH 440
           VI+Y   
Sbjct: 413 VIDYIIE 419


>gi|303251272|ref|ZP_07337450.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307252495|ref|ZP_07534391.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649814|gb|EFL79992.1| seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860087|gb|EFM92104.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 435

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    +LP  +      FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|313125296|ref|YP_004035560.1| seryl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312291661|gb|ADQ66121.1| seryl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 460

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 85/225 (37%), Gaps = 18/225 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E P D  I  + L     ++           G Y     G +    +   + +     
Sbjct: 134 LRELP-DEVIPHYDLGEELDILDFERGAKVTGGGFYFAKGDGARLEHALIQFMMDVHREQ 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIFR 119
           G +++  P   ++     +G++  + ++  R+      +R+D  +   PT E  +T+++R
Sbjct: 193 GYVDLFPPIPVNSQSMTGTGQFPKFTEDAYRIGKANGKERDDDDLWLCPTAEVPVTNMYR 252

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I    +LP         FR E         G++R  +F   +  +F + PE S   + 
Sbjct: 253 DEILLDDDLPVKHQAYTPNFRREAGEHGTETRGIVRVHQFNKVEMVNF-VRPENSYEQFE 311

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL-ADTGET 219
           ++      +  RL L    +   +G +G   + ++ +     G+ 
Sbjct: 312 ELLDEAEEVLRRLELPYRILEMCTGDLGFTQAKKYDIEVWAPGDD 356


>gi|162139069|ref|YP_597556.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|162139118|ref|YP_601442.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 426

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 144/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +  +LG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LLEKLGIKDVTLHLNSLGSPESR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 175 SAYRQTLIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 235 AHFEAVKAML-------EALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 287

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +G+  P       + L  +    
Sbjct: 288 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGLALPIE-TEMDVYLAVLGDG- 339

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 340 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 397

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 398 KNNRSRQEVEVSFED 412


>gi|157165317|ref|YP_001466859.1| histidyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|166227955|sp|A7ZDK1|SYH_CAMC1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|112801287|gb|EAT98631.1| histidyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 408

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 133/427 (31%), Gaps = 52/427 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   K    +     E     G  ++  P L+   L+  S     D  GKEM +
Sbjct: 7   GMKDMLPARAKLYAQIIKTCEEVAKNYGYEQILTPHLEETALFKRSVGESSDIVGKEMYQ 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+    +   P     +   F        N+    +     FR E RP+ G  R REF
Sbjct: 67  FEDKGGNDVCLRPEGTAGVVRAFIEAKLDRANVTKRCFYHGSMFRYE-RPQKG--RLREF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                  F    EGS +    + +    IF+RL +K+       G      S++  ++  
Sbjct: 124 HQFGCECFG---EGSVYEDASIILMVSEIFNRLNIKTTLKINSLGDESSMKSYKEKLVKF 180

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E      +D     + +     D  I     + +       +     +  F  L E  
Sbjct: 181 LDENDDKICEDCKRRKLLNPIRVLDCKIESCQEIYKNAPVITDSLSDEAQADFAKLQEIL 240

Query: 276 RVSARGIEVGHIFYFGTKY----SLPMSATFKGAD------GKDHYVQMGSYGIGA---- 321
             +    E+      G  Y    +    +   G+       G+   +     G  +    
Sbjct: 241 TANGVKFEIDTKLVRGLDYYCKTAFEFISNEIGSQSAVAGGGRYDRLVEYLGGRASYGVG 300

Query: 322 ----MRVVAAVIESSHDGKGIIWPDSVAPFKISLI---NIKAHDQVCRDA---CEKIYAR 371
               +  +  ++  + D +  ++  ++    +  I     K   +   +     +K+   
Sbjct: 301 FAMGVERIMEILGEAGDERDGVYLCALDAANVDFIYNLGSKLRKKYQVEISYEAKKLQKH 360

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L         D+   +I               + VG   + ++K+  K+  T   + ++L
Sbjct: 361 LQNA------DNKNAKIF--------------LCVGENEMKENKIWYKNLETKDEKTINL 400

Query: 432 EEVINYA 438
           +E+    
Sbjct: 401 DELEKEL 407


>gi|33240753|ref|NP_875695.1| seryl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|46577201|sp|Q7VAZ8|SYS_PROMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33238281|gb|AAQ00348.1| Seryl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 425

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +   ++   + +     G  E+  P L +      SG+   + +E  + +   +  + 
Sbjct: 173 GARLERSLINFMLDIHTSKGYSEVLPPVLVNTASLEGSGQLPKFAEESFKCS---EDDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R+ +  +  LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPLTSLHRNEVIPFEKLPIKYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----HEFIVLADTG 217
            F + P+ SK ++  +      I  +L L    +   SG +G   S     E  +     
Sbjct: 290 WF-VEPKKSKEAHQIITADAEAILQKLELPYRVVELCSGDLGFSASCTYDLEVWLPGANS 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCDDF 361


>gi|294787454|ref|ZP_06752707.1| glycine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315226976|ref|ZP_07868764.1| glycyl-tRNA synthetase beta subunit [Parascardovia denticolens DSM
           10105]
 gi|294484810|gb|EFG32445.1| glycine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315121108|gb|EFT84240.1| glycyl-tRNA synthetase beta subunit [Parascardovia denticolens DSM
           10105]
          Length = 502

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 77/467 (16%), Positives = 153/467 (32%), Gaps = 60/467 (12%)

Query: 24  KLMLRTGMIHQHS--KG----IYSWLPLGQKALDNVN-AIIREEQNRTG-AIEMSVPTLQ 75
           +L  R G +       G     + + PLG    DN+     R      G  + +    + 
Sbjct: 33  QLAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKHEWWRSMVTTRGDVVGVDTSVIL 92

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            +++WV SG    +      L +  +    +   H E   +  +   +    L       
Sbjct: 93  PSEVWVASGHVKVFND---PLVECLNCHKRFRADHLEEHFE-AKHGRQPSGMLEIPCPAC 148

Query: 136 QLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               +  E R    ++R+    ++D  S   L PE ++     +FV + ++   LG    
Sbjct: 149 GTVGKWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQ----GIFVDFAQV---LGTSRQ 201

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                   +G    +E         T+ F   +   F  P E+ ++              
Sbjct: 202 KPPFGIANMGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDARRAWYID 261

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSA 300
                 +    E   +   +    S R +++ + F F              T Y L   +
Sbjct: 262 LGVNPDNLRLYEHPKE---KLSHYSKRTVDIEYKFGFQGSDWGELEGIANRTDYDLSAHS 318

Query: 301 TFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------II 339
              G D        G+ +   +     G  R + A +  ++D                + 
Sbjct: 319 RHSGKDLSYFDPASGERYVPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGVDTRTVLR 378

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               ++P K +++ +     +      ++   L +   D+ +D+ G  IG ++   D +G
Sbjct: 379 LDPRLSPVKAAVLPLSKQPDLQN-IAHRLADELREDDWDIDYDEAGA-IGRRYRRQDEIG 436

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            PL V V    V D  V I+ R +  +E ++L  V +Y      + R
Sbjct: 437 TPLCVTVDFDTVDDQAVTIRERDSMKQERVALGRVADYVGSFIRDKR 483


>gi|237756220|ref|ZP_04584783.1| seryl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691612|gb|EEP60657.1| seryl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 251

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 13/209 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G  E+  P L   ++   +G+   +  ++ ++ D +   +   PT
Sbjct: 10  RALINFMLDVHIKQHGYTEVWTPALVKPEILFGTGQLPKFKDDLYKIEDED---LYLIPT 66

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I S  +LP  +      FR E     +   G++R  +F   +     +
Sbjct: 67  AEVTLTNLHADEILSEEDLPKYYTAYTPCFRKEAGSHGKDVKGILRQHQFDKVELVKI-V 125

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
            PE S +   K+     RI   L +    +   +G +G   +     E  + +     ++
Sbjct: 126 KPEDSYNELEKLVNEAERILQLLEIPYRVVLLCTGDMGFSAAKTYDIEVWIPSQNRYREI 185

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +  DF        + D    N  V 
Sbjct: 186 SSCSNTEDFQARRAKIRYKDKDGKNHYVH 214


>gi|257419652|ref|ZP_05596646.1| histidyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257161480|gb|EEU91440.1| histidyl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 433

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 139/433 (32%), Gaps = 51/433 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +E     D +  
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYL-N 230

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVG-HIFYFGTKYSLPMSATF 302
                 + A       +      DS         +    E+       G + ++     +
Sbjct: 231 EPSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRY 290

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G     G       G +G+G  RV   ++    +   I    +++     ++ I +   
Sbjct: 291 NGLVEELGGPDTPGFG-FGMGIERV---LLTMEAEEVVI---PALSELDAYVVGIGSDTN 343

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V   A  ++   +   G     D M  +  +QF  AD L   L + +G   +++  V +K
Sbjct: 344 V---AALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVK 400

Query: 420 HRLTGIREDMSLE 432
              T   +   L 
Sbjct: 401 SMATREEKAFPLS 413


>gi|189345581|ref|YP_001942110.1| glycyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|189339728|gb|ACD89131.1| glycyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 489

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 75/481 (15%), Positives = 151/481 (31%), Gaps = 66/481 (13%)

Query: 19  EIASHKLM---LRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           +   HKL+    R G I   S         + + PLG +   N+  +      R  A  +
Sbjct: 17  DKVMHKLVSLAKRRGFIFPSSEIYGGLSSCFDYGPLGSEMKKNIKELWWNSMTRRHANIV 76

Query: 70  SV--PTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEE------------- 112
            +    + +  +W  SG   S+   M+  R   R  +A      H E             
Sbjct: 77  GIDASIMMNPTVWEASGHVASFNDPMIDDRTTKRRYRADHLIENHIEKLRRDGKTDHAEA 136

Query: 113 --VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF----------LMKDA 160
                +       S R L        +K  D     +     R+F          +   +
Sbjct: 137 VQSAYEAVAGAPDSNRALYDLITGEAIKAPDTGSGDWT--EVRQFNLMFQCNMGAVADTS 194

Query: 161 YSFDLTPEGSKHSYNKMFVS--YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
               L PE ++  +          R+    G+  I     +  + G+     +V  +  E
Sbjct: 195 GIVYLRPETAQGIFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFIFR-MVEFEQME 253

Query: 219 TQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            Q F           +   + F+  ++   I ++    Y      H   L   +      
Sbjct: 254 MQYFVKPGSQIEAFEAWREERFNWYVTELGITQEKLHWYKHDKLAHYADLAYDIKFEFPF 313

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVI 329
               IE  H     T + L     + G +         + +   +     G  R+  A++
Sbjct: 314 GTEEIEGIHSR---TDFDLSQHQQYSGKNMEYIDQTTNERYIPYVVETSSGCDRLFLALL 370

Query: 330 ESSHDGK--------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             +++           +     VAP K +++ +    ++  +  E   + LS     V +
Sbjct: 371 SDAYNEDVVDGEPRVMLKLSPKVAPVKAAVLPLVKKGEM-GEKAELFRSELSTA-FMVQY 428

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD    IG ++   D +G P    V  + + D  V +++R +  +E + +     + + +
Sbjct: 429 DD-AASIGKRYRRQDEIGTPFCFTVDHQTLEDQTVTVRYRDSATQERIDMSRAKEFLATK 487

Query: 442 F 442
            
Sbjct: 488 I 488


>gi|307254703|ref|ZP_07536531.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307256921|ref|ZP_07538699.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307259145|ref|ZP_07540875.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306862376|gb|EFM94342.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306864655|gb|EFM96560.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306866812|gb|EFM98670.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 435

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    +LP  +      FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|303244762|ref|ZP_07331092.1| histidyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302484896|gb|EFL47830.1| histidyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 373

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 131/392 (33%), Gaps = 52/392 (13%)

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            S+    ++G  +   K++    D  ++ M   P     +   + + +K+    P   Y 
Sbjct: 3   VSSSYLKKTG--EDIRKQLFVFKDHGNREMGLRPELTSSVVRFYINELKN-LPKPLKLYY 59

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY--------NKMFVSYL---- 182
               FR E  P+ G  R REF              +            NK+ + Y     
Sbjct: 60  FANCFRYE-NPQAG--RYREFWQMGCELIGSKYPIADAEIINLAMDGLNKIDMDYEINIG 116

Query: 183 ------RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  IF    L       E   I   +  E     +   +++  S +  D      N
Sbjct: 117 HLGVLRGIFKEFNLSE----DEELKIRRLIDKEDYKGLENYLSEIKSSDELRDIIFKILN 172

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           +  D  +  +        P +  +  + E++ + +  +  V   GI  G  +Y G  +  
Sbjct: 173 SKGDKSVISDLKEVLKDYPTSIEAMNNLEEILEFVKHDNIVVNFGIARGLDYYTGMVFE- 231

Query: 297 PMSATFKGADGKDHYVQMGSY-------GIGAMRVVAAV-----IESSHDGKGIIWPDSV 344
                +   +G       G Y       G      V        +  + D         V
Sbjct: 232 ----IYGKKEGARQVCGGGRYDNLIELFGEKPTPAVGFAYGFDRVMLNIDD------FEV 281

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
               I +I IK   ++ ++ C  I   L K G  V  + M  ++      A+ +G    +
Sbjct: 282 EDESILIIPIKKDKKLLKE-CLNIADVLRKSGKSVEIELMNRKLNKALNYANAVGINKVI 340

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           IVG + +S  KV +K+  TG +E + L+E+ N
Sbjct: 341 IVGEQELSKGKVSLKNMKTGEQELVGLDELEN 372


>gi|227503138|ref|ZP_03933187.1| glycyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|306836623|ref|ZP_07469589.1| glycyl-tRNA synthetase beta subunit [Corynebacterium accolens ATCC
           49726]
 gi|227076199|gb|EEI14162.1| glycyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|304567453|gb|EFM43052.1| glycyl-tRNA synthetase beta subunit [Corynebacterium accolens ATCC
           49726]
          Length = 459

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 154/464 (33%), Gaps = 70/464 (15%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVE 82
           L+ + G I+  S+  + + PLG +  +N+         ++    + +    +Q   +WV 
Sbjct: 17  LVYQAGEIYGGSRSAWDYGPLGVELKENIKRQWWRHMVQSRPDVVGVDTSVIQPRQVWVS 76

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT-FYQIQLKF-- 139
           SG  + +      L +       Y   H      +  ++ + + + P      I      
Sbjct: 77  SGHVEVFTD---PLVESRHTGKRYRADH------LIEAYEEKHGHEPENGLADINDPETG 127

Query: 140 ----RDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                 E +   G++++    + D      L PE ++  +            R+      
Sbjct: 128 QPGDWTEPKAFSGLLKTFLGPVDDEQGLHYLRPETAQGIFINFKNVMTS--SRMKPPFGI 185

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                  IG    +E         T+ F   +   F  P E+ ++      +        
Sbjct: 186 A-----NIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDDR-----YK 235

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFG-------------TKYSLPM- 298
            Y               P+ K    S R ++V + F F              T Y L + 
Sbjct: 236 WYTDLGIKEENLRLYEHPKEKLSHYSKRTVDVEYAFGFKGSKWGELEGVANRTDYDLSVH 295

Query: 299 ------SATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG-------------I 338
                   ++      + +   +     G  R + A +  ++D +              +
Sbjct: 296 DKGSGEDLSYYDQANDERWIPYVIEPAAGLGRSMMAFLVDAYDEEEAPNAKGGTDKRVVL 355

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +AP K++++ +   +++      ++  +L     +V +D  G  IG ++   D +
Sbjct: 356 RLDRRLAPIKVAVLPLSKKEELSTP-ARELADKLRAYW-NVDFDVSGA-IGRRYRRQDEV 412

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P  V      + D+ V ++ R T  +E + +E++ +Y + R 
Sbjct: 413 GTPFCVTFDFDSLEDNAVTVRERDTMEQERVKIEDLESYLAARL 456


>gi|171920478|ref|ZP_02931777.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171902936|gb|EDT49225.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813]
          Length = 418

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFSEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           F   +       PE S      M      I   L L    +   +G +G  
Sbjct: 281 FHKVELVKL-CKPEDSFKELESMTRQAESILEALELPYRRIVLCTGDLGFS 330


>gi|13357663|ref|NP_077937.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762301|ref|YP_001752189.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508823|ref|ZP_02958276.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701768|ref|ZP_02971450.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|30173220|sp|Q9PR38|SYS_UREPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083594|sp|B1AI95|SYS_UREP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|11271515|pir||D82932 seryl-tRNA synthetase UU106 [imported] - Ureaplasma urealyticum
 gi|6899062|gb|AAF30512.1|AE002111_1 seryl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827878|gb|ACA33140.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|182675788|gb|EDT87693.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701042|gb|EDU19324.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 418

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFSEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           F   +       PE S      M      I   L L    +   +G +G  
Sbjct: 281 FHKVELVKL-CKPEDSFKELESMTRQAESILEALELPYRRIVLCTGDLGFS 330


>gi|124267877|ref|YP_001021881.1| seryl-tRNA synthetase [Methylibium petroleiphilum PM1]
 gi|166222744|sp|A2SJA7|SYS_METPP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|124260652|gb|ABM95646.1| seryl-tRNA synthetase [Methylibium petroleiphilum PM1]
          Length = 432

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 14/217 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRND 101
            +    +   + + Q    G  E   P + + ++   +G+   +  +M  +     D   
Sbjct: 172 ARLHRALAQFMLDVQTQEHGYTECYTPYIVNREVLEGTGQLPKFEADMFWVTRGGDDDEA 231

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
                  T E  +T+  R  + +   LP         FR E     R   G++R  +F  
Sbjct: 232 TTQYLISTSEISLTNSVREQVLAADQLPIKLTAHSPCFRSEAGSAGRDTRGMIRQHQFDK 291

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVL 213
            +      T E S  +   M      +  +L L    +   +G +G   +     E  + 
Sbjct: 292 VEMVQI-TTAEQSDAALEAMVGHAEAVLQKLELPYRVITLCTGDMGFGAAKTYDLEVWLP 350

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           A     ++    +   F      T +      N +V 
Sbjct: 351 AQNTYREISSCSNCEAFQARRMQTRYKTAQGKNELVH 387


>gi|238788169|ref|ZP_04631964.1| Histidyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238723756|gb|EEQ15401.1| Histidyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 424

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 142/443 (32%), Gaps = 65/443 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + +I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIESILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LILLSARWWRALGISE-HVQLELNSIGSLDARADY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N D   +++    +  +    +    
Sbjct: 178 REALVTFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDEESKQHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
               +L D             RG++     +F       G + ++     + G      G
Sbjct: 238 AGLCELLDKAGIPYTVNERLVRGLDYYNRTVFEWVTSSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +        + +G  R+V  V   +        PD   P  + +  I + +     A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PDFQVPATVDVYVISSGENTQS-AAML 346

Query: 368 IYARLSKV-----------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +   L              G +V           QF  AD  G  + +++G   V+  KV
Sbjct: 347 LAEHLRDAMPTLKLMTNYGGGNVK---------KQFTRADKWGARVALMLGESEVAAQKV 397

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            +K    G +E ++  +V    +
Sbjct: 398 VVKDLRNGEQETLAQADVAARLA 420


>gi|322434825|ref|YP_004217037.1| seryl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321162552|gb|ADW68257.1| seryl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 451

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 14/173 (8%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN---- 100
           G +    +   + +    + G  E+  P + ++     +G+   + +++    D+     
Sbjct: 174 GARLERALANFMLDLHTRQHGYTEVLPPAMVNSKSLFGTGQLPKFAEDLFHCDDKGPYEP 233

Query: 101 ----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRS 152
               D      PT E  +T+IFR       +L  +F      +R E     +   G++R 
Sbjct: 234 GNYQDSDHWLIPTAEVPLTNIFRDETLDEADLTISFCAYTSCYRSEAGSHGKDTRGLIRQ 293

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            +F   +   F   P+ S+  +  +  +   I  +LGL    M   +G +G  
Sbjct: 294 HQFQKVELVKF-TRPQDSEAEHENLTRNAETILEQLGLPYRRMLLCTGDMGFS 345


>gi|168335374|ref|ZP_02693468.1| glycyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 460

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 111/357 (31%), Gaps = 53/357 (14%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 152 MFKTFQGVTEDSKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 211

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F   P      +             LG+    +R     +     
Sbjct: 212 FIFRTREFEQMELEFF-CKPGTELEWFVTWKNICKSWLLNLGIDEKSIR-----MRDHAK 265

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E    ++        S     FP            +   + +         +       
Sbjct: 266 EELSHYSN------ATSDIEFKFPFGWGELWGIASRTDYDLKQHMEHSGEDMNYFDPTTN 319

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +P     S  G +   + +    Y           DG    +               
Sbjct: 320 EKYIPYCIEPSL-GADRVTLAFLCEAY-----CEESLEDGDSRNIFK------------- 360

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                       +  ++AP K +++ +        +    IY  LS    +V +D+ G  
Sbjct: 361 ------------FHPALAPVKAAILPLSKK---LSEQALNIYNMLSDH-FNVEYDEAG-S 403

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IG ++   D +G P  +        D+ V I+ R +  +E +++ E++ Y + +  N
Sbjct: 404 IGKRYRRQDEIGTPFCITYDFDSKDDNSVTIRDRDSMKQERINIXEILKYITKKIDN 460


>gi|83645246|ref|YP_433681.1| seryl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123533541|sp|Q2SJB8|SYS_HAHCH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|83633289|gb|ABC29256.1| seryl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 427

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 12/193 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E   P L  A     +G+   +  ++ ++   +D    
Sbjct: 170 ARLHRALAQFMLDIHTTEHGYQETMTPFLVHAHALQGTGQLPKFEADLFKVPGEHD--FY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I   + LP         FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPVTNLVREEILDAKELPLKMTSHTPCFRSEAGSYGRDVRGMIRQHQFEKVELI 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +  ++  +  RI   L L    +    G +G   +     E  + A   
Sbjct: 288 HVVA-PEQSDAALEELTGNAERILQLLNLPYRVVALCGGDLGFSAAKTYDIEVWLPAQKK 346

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 347 YREISSCSNCRDF 359


>gi|329998190|ref|ZP_08303002.1| serine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|328538805|gb|EGF64880.1| serine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 430

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHGGLDFAAAVKLTGSRFVVMKGQLARLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I +
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIIN 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKVALCTGDMGFSACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|313206863|ref|YP_004046040.1| glycyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312446179|gb|ADQ82534.1| glycyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|325335699|gb|ADZ11973.1| Glycyl-tRNA synthetase (class II) [Riemerella anatipestifer RA-GD]
          Length = 513

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 117/363 (32%), Gaps = 72/363 (19%)

Query: 99  RNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
            N   +   P T + +  +       S   LPF   QI   FR+E+  R  + R REF  
Sbjct: 208 ENAMELYLRPETAQGIFVNFSNVQKTSRHKLPFGIAQIGKAFRNEIVARQFIFRMREF-- 265

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     E  +  +     + L  +                                
Sbjct: 266 ----------EQMEMQFFVAPGTELSFYE------------------------------- 284

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E +       +   + +EN  F D   L                   E            
Sbjct: 285 EWKQKRLNWHLALGLGTENYKFHDHEKLAHYANAAADIEFKFPFGFKELE---------- 334

Query: 278 SARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV------- 328
              GI     F      K+S      F    G+ +   +    +G  R+  AV       
Sbjct: 335 ---GIHSRTDFDLTAHEKFSGRKLQYFDPERGESYVPYVVETSVGLDRMFLAVFSSSLKE 391

Query: 329 --IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             +E       +  P ++AP K +++ +   D    +  EKI+  L K   +V +++  +
Sbjct: 392 EALEDGSTRTVLSLPPALAPVKAAILPLVKKD-GLPEFAEKIFNEL-KYDFNVIFEE-KD 448

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            IG ++   D +G P  + V    ++D+ V ++ R T  +E +S+E++      +  N R
Sbjct: 449 SIGKRYRRQDAIGTPFCITVDHDSLNDNTVTLRERDTMKQERVSVEDLRKIIDDKV-NFR 507

Query: 447 PVL 449
            +L
Sbjct: 508 TLL 510


>gi|229076294|ref|ZP_04209259.1| Glycyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|229099375|ref|ZP_04230305.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229105535|ref|ZP_04236169.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|229118387|ref|ZP_04247741.1| Glycyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228664957|gb|EEL20445.1| Glycyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228677805|gb|EEL32048.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228683999|gb|EEL37947.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228706729|gb|EEL58937.1| Glycyl-tRNA synthetase [Bacillus cereus Rock4-18]
          Length = 495

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 117/364 (32%), Gaps = 70/364 (19%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  +S  + LPF   QI   FR+E+ P  
Sbjct: 188 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 247

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +     +       LG+                 
Sbjct: 248 FTFRTREFEQMELEFF-CKPGEDLEWFAFWRETCKNWLLSLGMH---------------- 290

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E + L D GE ++                 + +  +       +            +  
Sbjct: 291 EESMRLRDHGEEELSH---------------YSNATTDIEFKFPFGWGELWGVASRTDFD 335

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E+       I+                        + +        +GA RV  A
Sbjct: 336 LKRHMEHSNEDFNYIDPQT--------------------NERYVPYCIEPSLGADRVTLA 375

Query: 328 VIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            +  +++ + +         +  ++AP+K +++ +        +   +++A L+K    V
Sbjct: 376 FLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGATEVFAELAK-DFMV 431

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+ G  IG ++   D +G P  +      V D  V ++ R T  +  M + E+  +  
Sbjct: 432 DFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLE 490

Query: 440 HRFS 443
            +  
Sbjct: 491 KKIQ 494


>gi|310819975|ref|YP_003952333.1| seryl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309393047|gb|ADO70506.1| Seryl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 426

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 7/167 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +     +    +   + +   + G  E+  P L   +  + +G+   +  +  + +   
Sbjct: 165 FYKAALARLERALVTFMIDVHTQKGYTELLPPYLVLRETMMGTGQLPKFEDDAFKTS--G 222

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D      PT E  +T+     I     LP  +      FR E     R   G++R  +F 
Sbjct: 223 DPERFLIPTAEVPVTNYHSDEILEGGQLPLKYCAFSPCFRAEAGAAGRDTRGLIRQHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             +   F  TPE S      M      I  RLGL    M   +G +G
Sbjct: 283 KVELVKF-ATPETSLSELEGMTDDACDILRRLGLHHRVMLLCTGDMG 328


>gi|304398584|ref|ZP_07380456.1| histidyl-tRNA synthetase [Pantoea sp. aB]
 gi|304353795|gb|EFM18170.1| histidyl-tRNA synthetase [Pantoea sp. aB]
          Length = 424

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 134/438 (30%), Gaps = 47/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  ++++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTALWQRIEGVLKQTLASYGYSEIRLPLVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M  +  R +  LG+    +R E   IG   +    
Sbjct: 122 YRQFYQIGVEVFGLQGPDIDAELI-MLNA--RWWKALGISE-HVRLELNSIGSLEARAHY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S+N+D   +++    +  +    +    
Sbjct: 178 RDALVAFLEQHKEVLDEDCKRRMYSNPMRVLDSKNSDVQQLLNDAPQLGDYLDDESREHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSY 317
                L D         +   RG++          Y+  +      + G +      G Y
Sbjct: 238 SGLCALLDDAGISYTVNQRLVRGLDY---------YNRTVIEWVTDSLGSQGTVCGGGRY 288

Query: 318 GIGAM----RVVAAVIESSHDGKGIIWPDSVAP-------FKISLINIKAH-DQVCRDAC 365
                    R   AV  +    + ++   +V P         + +I              
Sbjct: 289 DGLVEQLGGRATPAVGFAMGMERLVLLVQAVNPEFEPTSNVDVYVIASGQGVQSAAMQLA 348

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EK+     ++     +     +   QFA AD  G  + +++G   V   +V IK    G 
Sbjct: 349 EKLRDEAPELRLMTNFGGGNFK--KQFARADKWGARVALVLGEDEVKAGQVVIKDLRRGE 406

Query: 426 REDMSLEEVINYASHRFS 443
           ++ +   E          
Sbjct: 407 QQTLDQAEAAAVLRTLLQ 424


>gi|226309605|ref|YP_002769499.1| seryl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|254783010|sp|C0ZH54|SYS_BREBN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226092553|dbj|BAH40995.1| seryl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 426

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 11/203 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   N  G  E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALMNFMMDLHSNEHGYEEVIPPFIVNRTSMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T++ R  I    +LP  +      FR E     R   G++R  
Sbjct: 222 --EGPDYFLIPTAEVPVTNMHRDEIMDGADLPRYYTAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI-- 211
           +F   +   F + PE S    +K+  +  ++   LGL    +   +G +G   + +F   
Sbjct: 280 QFNKVELVKF-VKPEESYDELDKLVKNAEKVLQLLGLPYRVLSMCTGDLGFTAAKKFDIE 338

Query: 212 VLADTGETQVFCSKDFMDFPIPS 234
           V   +G+T    S         +
Sbjct: 339 VWIPSGDTYREISSCSNFEDFQA 361


>gi|119486228|ref|ZP_01620288.1| seryl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119456719|gb|EAW37848.1| seryl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 429

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G +E+  P L ++     +G+   + +E  + +   +  + 
Sbjct: 174 GAALERALVQFMLDTHTSNGYVEVMPPLLVNSTSLQGTGQLPKFAEESFKCS---EDDLW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + + +R  I     LP         FR E     +   G++R  +F   +  
Sbjct: 231 LIPTSEVPVVNFYRDEILDGEQLPIYHCSFTPCFRREAGSYGKDTRGLIRLHQFHKVELI 290

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+  + K+      I   L L    +   +G +G   +     E  + +   
Sbjct: 291 KL-VRPETSEAEHEKLVQDAEGILQALKLPYRVIELCTGDLGFSAAKCYDIEVWLPSSQS 349

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 350 YREISSCSNVKDF 362


>gi|296130022|ref|YP_003637272.1| glycyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021837|gb|ADG75073.1| glycyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 462

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 138/455 (30%), Gaps = 82/455 (18%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +    + +    +    +WV SG    +     E L
Sbjct: 35  WDYGPLGVELKENIKRQWWRAMVTSRDDIVGLDSSVILPRQVWVASGHVGVFTDPLTECL 94

Query: 95  RLADRNDKAMIYGPTH-------EEVMTDIF------RSHIKSYRNLPFTFYQIQLKFRD 141
               R  +  +            E  + +I       R      R+             D
Sbjct: 95  SCHKRFREDHLLEDFEAKKGRAPETGLAEIACPNCGTRGQWTEPRDFNMMLKTYLGPVED 154

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E     G+   R                   +   +FV++  ++    +K        G 
Sbjct: 155 ES----GLHYLR-----------------PETAQGIFVNFKNVYTAARMKP---PFGIGQ 190

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IG    +E         T+ F   +   F  P  +  +                 A  + 
Sbjct: 191 IGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDETWHQYWIDTRTDWYVDLGIARENL 250

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD-- 306
            H E       +    S R +++ + F F              T + L   +   G D  
Sbjct: 251 RHYEH---PAEKLSHYSKRTVDIEYKFGFSGSEWGELEGIANRTDFDLGTHSEHSGQDLS 307

Query: 307 ------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPF 347
                  + +   +     G  R + A +  S+                 +     +AP 
Sbjct: 308 FFDQAKNERYVPYVIEPAAGLTRSLMAFLVESYSEDEAPNTKGGVDKRTVLKLDPRLAPV 367

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K +++ +  ++Q        + A L +   +V +DD G  IG ++   D +G P  + V 
Sbjct: 368 KAAVLPLSRNEQ-LSPKARDLAAELRRSW-NVDFDDAGA-IGRRYRRQDEIGTPFCITVD 424

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              + D  V I+HR    ++ ++L++V  Y + R 
Sbjct: 425 FDTLDDQAVTIRHRDDMSQQRVALDQVTGYLAQRL 459


>gi|251792122|ref|YP_003006842.1| seryl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247533509|gb|ACS96755.1| seryl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 435

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 19/212 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     ++  + +    + G  E  VP L + D    +G+   +G+++
Sbjct: 159 TGSRFVVMKGQIARLHRAISQFMLDLHTEQHGYTEAYVPYLVNHDTLYGTGQLPKFGEDL 218

Query: 94  LRLA-----DRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
                    D N+  +     PT E  +T++ R  I    NLP         FR E    
Sbjct: 219 FHTKPLEGQDPNEVQRTYGLIPTAEVPVTNLVRGEILEAENLPLKMTAHTPCFRSEAGSY 278

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +     + PE S  +  ++     ++   LGL    +   +G +
Sbjct: 279 GRDTRGLIRMHQFDKVELVQI-VEPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDM 337

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDF 230
           G         E  V A     ++    +  DF
Sbjct: 338 GFGSCKTYDLEVWVPAQNTYREISSCSNMWDF 369


>gi|315179812|gb|ADT86726.1| seryl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 435

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +    + G  E+ VP L ++D    +G+   +GK++
Sbjct: 160 TGARFVIMKGQFARLHRAIAQFMLDLHTEQHGYTELYVPYLVNSDTLFGTGQLPKFGKDL 219

Query: 94  LRLA-------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
                      D   + +   PT E  +T++ R  I    +LP         FR E    
Sbjct: 220 FHTEPLAEKASDEEPRRLSLIPTAEVPVTNLVRDTITEEADLPLKMTAHTPCFRSEAGSY 279

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +       PE S  +  ++     ++   L L    +   +G +
Sbjct: 280 GRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEELTGHAEKVLQLLELPYRKVILCTGDM 338

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G         E  V A     ++    +  DF        F
Sbjct: 339 GFGSCKTYDLEVWVPAQKTYREISSCSNMWDFQARRMQARF 379


>gi|262305765|gb|ACY45475.1| glu- + pro-tRNA synthetase [Machiloides banksi]
          Length = 134

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+ G   + G  +S      ++  +  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGGTSHHLGQNFSKMFEIVYEDPETREKKYVYQNSWGLT-TRTIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P +VA  ++ ++         D       ++C+ +   L   G  V  D       
Sbjct: 74  GLVLPPNVACIQVVIVPCGITASMKDAERDSLLNSCKDLETELVAGGVRVRGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|209521126|ref|ZP_03269854.1| histidyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209498436|gb|EDZ98563.1| histidyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 446

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 136/442 (30%), Gaps = 59/442 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRASIEHNMLY-DGPKRLWYVGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSH--EF 210
           +F      +       +      M     R++  LGL  I +   S G      +H  E 
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLSGIKLEINSLGLAEERAAHRVEL 187

Query: 211 IVLADT-----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           I   +       E             + ++N    +I      +  +    +       +
Sbjct: 188 IAYLEKHMDVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGEESRAHFEGLQ 247

Query: 266 KLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHYVQ 313
           +L  +            RG++     +F       G + ++     +             
Sbjct: 248 RLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTA 307

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
              + +G  R++  + E             + P      +  +   D   R+    I  R
Sbjct: 308 ACGWAMGIERILELLKEE-----------QLVPEDEGCDVYVVHQGD-AAREQAFIIAER 355

Query: 372 LSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT- 423
           L   G DV      D  G+    +     AD  G    V++G   +++  V +K  R T 
Sbjct: 356 LRDTGLDVILHCSAD--GQSASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTQ 413

Query: 424 -----GIREDMSLEEVINYASH 440
                  ++++  E++  +  +
Sbjct: 414 ANGGKNEQQNVPAEDLTEFLIN 435


>gi|159903269|ref|YP_001550613.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|229558704|sp|A9B9Z7|SYH_PROM4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|159888445|gb|ABX08659.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 423

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 126/411 (30%), Gaps = 43/411 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYG 90
            Q  +G+   LP+  +    V  + R   +R G  E+  P L+  +L+    G   D  G
Sbjct: 4   FQTLRGMVDLLPMQTQRWQIVENLARHHFHRAGLKEIRTPLLEITELFARGIGEATDVVG 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM    DR D++    P     +      H       P   +     FR E RP+ G  
Sbjct: 64  KEMYTFLDRGDRSCTLRPEGTASVVRSVVQHGLLN-QGPQRLWYGGPMFRYE-RPQAG-- 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R+F       F L    +      +      +   LGLK + +   S     D  +  
Sbjct: 120 RQRQFHQMGVEFFGLPSIHADAE---LISIAWDLLQDLGLKDLKLELNSLGTFEDRQNYH 176

Query: 211 IVLADTGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             L +  E       KD  D    +     D        + +            +++ F 
Sbjct: 177 ARLNEWLECNFKLLDKDSQDRIHKNPLRILDTKNQSTQELLKDAPLLTDYLSDLSKERFL 236

Query: 270 SLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQM---- 314
            L E         ++ H    G  Y            L   AT  G  G+   +      
Sbjct: 237 CLQEALHKLKIPFDLNHNLVRGLDYYCHTAFEITSSQLGAQATVCGG-GRYDRLVKQLGG 295

Query: 315 -----GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + IG  R++  + +S H  +            + +  I   +    +    + 
Sbjct: 296 PDTPSIGWAIGMERLIILLEDSIHKEQF-----------VDVYFINRGELPAIE-ALSLT 343

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +L      V  D        QF  A+       +I+G   ++  ++ +K 
Sbjct: 344 RKLRAFNIIVELDHSQANFSKQFKRANRSNAKWAIIMGEDEIAKGEIRLKR 394


>gi|167856483|ref|ZP_02479199.1| histidyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167852392|gb|EDS23690.1| histidyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 429

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 145/446 (32%), Gaps = 58/446 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+    P        V + IR+     G  EM  P ++S DL+    G   D   K
Sbjct: 6   QALRGMNDLSPTETPLWQWVESNIRDIFASYGYTEMRSPIMESTDLFKRGVGEATDIVEK 65

Query: 92  EMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           EM      +   ++    P            H   Y       + I   FR E RP+ G 
Sbjct: 66  EMFTFTRSEEAGESFTLRPEGTAGCVRAAIEHGWIYNQE-QRLWYIGPMFRYE-RPQKG- 122

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F +    +      + V   R++ +LG++   +  +   IGG     
Sbjct: 123 -RYRQFHQAGVEIFGIPNAEADAE---LIVLTARLWEKLGIRE-HVTLQLNSIGG----- 172

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA----ATSDVHNE 265
             V     E  V   ++ +D      +++     +   I++               +H+ 
Sbjct: 173 LEVRTRYREALVAFLQNHLDVLKQDPDSERRLTTNPLRILDTKNQALQAVLNDAPKLHDF 232

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA----------TFKGADGK------- 308
              +S     R+ A   E+G  +    K    +            T  GA G        
Sbjct: 233 LDDESKAHFARLCAILDEMGIAYEVNQKLVRGLDYYNKTVFEWVTTALGAQGTVCGGGRY 292

Query: 309 --------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                    H  +   + +G  R+V  V E +        P+   P  + +  + +  + 
Sbjct: 293 DGLVAQLGGHATEGVGFAMGLERLVLLVQEVN--------PNVQLPRAVDIYVVHSG-EG 343

Query: 361 CRDACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 ++   L              G     QF  AD  G  + +++G   V++ KV +
Sbjct: 344 TTAVAFRLAETLRNAFPQLRTMLHTSGGNFKKQFKRADKSGAKIALVLGESEVAEQKVVV 403

Query: 419 KHR-LTGIREDMSLEEVINYASHRFS 443
           K       +  ++  ++IN  + RF+
Sbjct: 404 KDLFGEAEQMTIAQADLINELTTRFA 429


>gi|149190995|ref|ZP_01869256.1| seryl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148835129|gb|EDL52105.1| seryl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 435

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFEVKDHVDLGEMGDGLDFASATKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L +AD    +G+   +GK++           D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNADSLFGTGQLPKFGKDLFHTEPLTEKASDEEPRKLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 255 ISEEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|297538756|ref|YP_003674525.1| seryl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258103|gb|ADI29948.1| seryl-tRNA synthetase [Methylotenera sp. 301]
          Length = 426

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+         G    L  GQ  K    +   +   Q  + G  E 
Sbjct: 133 DFEVKDHADVGTPLGLDFDTGTKLSGTRFTLMRGQIAKMHRALAQFMLNTQTEQHGYEEC 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L +A+    +G+   + +++  L   ND  +   PT E  +T+  R  I    +LP
Sbjct: 193 YTPYLVNAETLTGTGQLPKFEEDLFSLQH-NDSKLYLIPTSEVTLTNTVRDEIVPLESLP 251

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     R   G++R  +F   +     + P+ S  +  +M      I 
Sbjct: 252 IKLTAHTPCFRSEAGSYGRDTKGMIRQHQFDKVEMVQI-VHPDTSYAALEEMVGHAENIL 310

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             LGL    +   +G +G   +     E  + A     ++
Sbjct: 311 KALGLPYRVVSLCTGDMGFGAAKTYDLEVWLPAQNTYREI 350


>gi|260914213|ref|ZP_05920686.1| serine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631846|gb|EEX50024.1| serine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 429

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 79/246 (32%), Gaps = 18/246 (7%)

Query: 14  NPRDAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTG 65
              D E+  H  +     G+         G    +  GQ  K    ++  + +      G
Sbjct: 131 KKFDFEVKDHVTLGENLQGLDFSAGAKLSGSRFAVMKGQIAKLHRALSQFMLDLHTQEHG 190

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E  VP L +      +G+   +G+++        ++     PT E  +T++ R  I  
Sbjct: 191 YTEAYVPYLVNHATLYGTGQLPKFGEDLFHTNALEGEQPYALIPTAEVPVTNLVRDEILD 250

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +       PE S  +  ++   
Sbjct: 251 ESELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQIVA-PETSMEALEELTGQ 309

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++   L L    +   +G +G         E  + A     ++    +  DF      
Sbjct: 310 AEKVLQLLELPYRKVLLCTGDMGFGSCKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQ 369

Query: 237 TDFDDI 242
             + + 
Sbjct: 370 ARYRNK 375


>gi|262040251|ref|ZP_06013502.1| histidine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042360|gb|EEW43380.1| histidine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 424

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 135/461 (29%), Gaps = 95/461 (20%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSF-----DLTPE----------------------------GSKHSYNKMF 178
            R+F    A  F     D+  E                             ++ +Y    
Sbjct: 122 YRQFHQIGAEVFGLQGPDIDAELIMLTARWWRELGISEHVSLELNSIGSLEARANYRDAL 181

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           V+YL  F     +    R  + P+    S    V A   +        ++D    +    
Sbjct: 182 VAYLEQFTDKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGD--YLDEESKAHFAG 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----PENKRVSARGIEVGHIFYFGTKY 294
              ++    I            D +N  +F+ +         V A G   G +   G   
Sbjct: 240 LCALLDDAGIRYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLG--- 296

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                       G+        + +G  R+V  V   +                +  I +
Sbjct: 297 ------------GRATPGV--GFAMGLERLVLLVQAVN---------PEFKADPVVDIYL 333

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFP 401
            A     + A   +  ++                G +             FA AD  G  
Sbjct: 334 VASGTDTQSAAMCLAEQV-----------RDALPGVKLMTNHGGGNFKKQFARADKWGAR 382

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + ++VG   ++D  V +K   +G +  ++ E V  +     
Sbjct: 383 VALVVGESEIADGNVVVKDLRSGEQTTVTQESVAAHLRTLL 423


>gi|229816611|ref|ZP_04446909.1| hypothetical protein COLINT_03668 [Collinsella intestinalis DSM
           13280]
 gi|229807817|gb|EEP43621.1| hypothetical protein COLINT_03668 [Collinsella intestinalis DSM
           13280]
          Length = 430

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 13/204 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +           G  E   P + + ++   +G+   +  +         +   
Sbjct: 174 GATLDRALQNFFLNTHISRGFTEFIPPVIVNREIMYGTGQLPKFEDDAYHT----GEDQF 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    +     LP  +      FR+E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVALTNLHAGEVLDASQLPLRYTAGTPCFREEAGSAGRDTRGIIRQHQFTKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F   PE S      M      I  +LGL    +   +G +G         E  + +   
Sbjct: 290 KF-AKPEESDDELESMVAEAEFILQQLGLPYRVISLCTGDLGFSARQTYDIEVWLPSYNA 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     N  + D
Sbjct: 349 YKEISSCSNCGDFQARRANIKYRD 372


>gi|113953126|ref|YP_731293.1| seryl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123327682|sp|Q0I8C9|SYS_SYNS3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|113880477|gb|ABI45435.1| seryl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 425

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  E+  P L ++     SG+   + +E  R AD +   + 
Sbjct: 173 GARLERALINFMLDLHTGKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCADDD---LW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I     LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPLTSLHRDEIIPSDQLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            F + PE S+ ++  +      +   L L    +   +G +G   
Sbjct: 290 WF-VHPEHSEEAHELITADAEAVLQALELPYRVLELCTGDLGFSA 333


>gi|330503300|ref|YP_004380169.1| seryl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328917586|gb|AEB58417.1| seryl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 426

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A     +G+   + +++ ++   +   + 
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEAYTPYLVQAPALQGTGQLPKFEEDLFKIRREDQADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   M  +  R+   L L    +   +G +G         E  V +   
Sbjct: 290 QI-VEPSKSFEALEGMTANAERVLQLLELPYRKLALCTGDMGFSAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|262305751|gb|ACY45468.1| glu- + pro-tRNA synthetase [Metajapyx subterraneus]
          Length = 139

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGA-----DGKDHYVQMGSYGIGAMRVVAAVIESS 332
           S RG++     + GT +S      F+        GK  +    S+G+ + R + A++   
Sbjct: 15  SGRGLQGATSHHLGTNFSSMFGIQFEDPTAAEGSGKKCFAYQNSWGL-STRTIGALVMVH 73

Query: 333 HDGKGIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSK-VGCDVFWDDM 384
            D KG++ P  VA  +  L+             Q    A   +  RL +  G     D  
Sbjct: 74  GDDKGLVLPPEVAQVQAVLVPCGVSATAATTEVQDLSQAARAMERRLQQGAGVRAKCDLR 133

Query: 385 -GEQIG 389
                G
Sbjct: 134 DNYSPG 139


>gi|9719727|gb|AAF97829.1|AC034107_12 Contains similarity to threonyl-tRNA synthetase from Arabidopsis
           thaliana gb|Y14329
          Length = 130

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +  V +    + ++  + A++   + GK   W   ++P +  + ++    +  R   +K+
Sbjct: 3   ERSVLIHRAVLSSVERLFAILLEQYKGKFPFW---LSPRQAIVCSV---SEDYRSYADKV 56

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             ++ + G  V  D     +  +   A +  +   ++VG +     +V +  R     E 
Sbjct: 57  RDQIHEAGYYVDVDTTDRNVSDKVQEAQVAHYNYILVVGDEEARTGQVTVWLRD----EM 112

Query: 429 MSLEEVINYASHRFSN 444
           MS+E + +    + +N
Sbjct: 113 MSIETLSDEFKLKTAN 128


>gi|290508293|ref|ZP_06547664.1| histidyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|289777687|gb|EFD85684.1| histidyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 414

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 137/434 (31%), Gaps = 57/434 (13%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   YLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N  ++   P            H   Y       + +   FR E RP+ G  R R+F    
Sbjct: 64  NGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRHE-RPQKG--RYRQFHQIG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A  F L           + +   R +  LG+    +  E   IG   +      A     
Sbjct: 120 AEVFGLQGPDIDAE---LIMLTARWWRELGIAD-HVSLELNSIGSLEARANYRDALVAYL 175

Query: 220 QVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           + F  K   D            + S+N D   +++    +  +    + T       L D
Sbjct: 176 EQFTDKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKTHFAGLCALLD 235

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM----RVV 325
                  V+ R +  G  +Y  T +      T  G+ G       G Y         R  
Sbjct: 236 DAGIRYTVNQRLV-RGLDYYNRTVFEWV--TTSLGSQGT--VCAGGRYDGLVEQLGGRAT 290

Query: 326 AAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             V  +    + ++   +V P      +  I + A     + A  ++  ++         
Sbjct: 291 PGVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQV--------- 341

Query: 382 DDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
                  G +             FA AD  G  + ++VG   ++D  V +K   +G +  
Sbjct: 342 --RDALPGVKLMTNHGGGNFKKQFARADKWGARIALVVGESEIADGNVVVKDLRSGEQTT 399

Query: 429 MSLEEVINYASHRF 442
           ++ E V  +     
Sbjct: 400 VTQESVAAHLRTLL 413


>gi|257422240|ref|ZP_05599230.1| histidyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|257164064|gb|EEU94024.1| histidyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|315157280|gb|EFU01297.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0043]
          Length = 433

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/437 (18%), Positives = 134/437 (30%), Gaps = 55/437 (12%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +E     D +  
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYL-N 230

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                 + A       +      DS              G  +Y  T + +   A   GA
Sbjct: 231 EPSKAHFEAVTDMLDLLEIPYEIDSNMVR----------GLDYYTHTIFEIMSEAPKMGA 280

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRD- 363
             +      G Y      +          G GI     ++   ++ +  +   D      
Sbjct: 281 --QSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTMEAEEVVISALSELDAYVVGI 338

Query: 364 ------ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                 A  ++   +   G     D M  +  +QF  AD L   L + +G   +++  V 
Sbjct: 339 GSETNIAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVN 398

Query: 418 IKHRLTGIREDMSLEEV 434
           +K   T   +   L  +
Sbjct: 399 VKSMATREEKAFPLSAI 415


>gi|312112686|ref|YP_003991002.1| glycyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311217787|gb|ADP76391.1| glycyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 460

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 141/441 (31%), Gaps = 50/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML--- 94
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGTELKNNIKRAWWKKFVQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDCK 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +   R+    +     EE   +I    +   + +     +  +   +     F  +R  +
Sbjct: 92  QCKARHRADKLIESALEEKGIEIVVDGLPFEK-MEELIKEHNIACPECGSHDFTNIR--Q 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRL--GLKSIPMRAESGPIGGDL 206
           F +       +T   +   Y +      +FV++  +   +   L     +     IG   
Sbjct: 149 FNLMFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQ-----IGKSF 203

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDVH 263
            +E      T  T+ F   +   F  P E   + D                        H
Sbjct: 204 RNEITPGNFTFRTREFEQMELEFFCKPGEELKWFDYWKQFCKQWLLSLGMKEENIRLRDH 263

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKGAD--------GKDHY 311
            ++                  G    +G    T Y L     + G D         + + 
Sbjct: 264 TKEELSHYSNATTDIEYKFPFGWGELWGIASRTDYDLKQHMEYSGEDFRYIDQETNERYI 323

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RV  A +  ++D + +             ++AP+K ++  +        
Sbjct: 324 PYCIEPSLGADRVTLAFMIDAYDEEELEDGTTRTVMRLHPALAPYKAAVFPLSKK---LA 380

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    I+A LSK    V +D+ G  IG ++   D +G P  +        D  V ++ R 
Sbjct: 381 EGARNIFADLSKH-FMVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSEQDGMVTVRDRD 438

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + + ++ ++   +  
Sbjct: 439 TMEQVRIPISQLKSFLEEKVQ 459


>gi|194099100|ref|YP_002002185.1| seryl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|239999406|ref|ZP_04719330.1| seryl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240017028|ref|ZP_04723568.1| seryl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
 gi|240081336|ref|ZP_04725879.1| seryl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|240116105|ref|ZP_04730167.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|240118389|ref|ZP_04732451.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|240126134|ref|ZP_04739020.1| seryl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|240128611|ref|ZP_04741272.1| seryl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|260440085|ref|ZP_05793901.1| seryl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|268595226|ref|ZP_06129393.1| seryl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268597438|ref|ZP_06131605.1| seryl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268601771|ref|ZP_06135938.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268604101|ref|ZP_06138268.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268684720|ref|ZP_06151582.1| seryl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|268686999|ref|ZP_06153861.1| seryl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291043373|ref|ZP_06569096.1| seryl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|238690216|sp|B4RN50|SYS_NEIG2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|193934390|gb|ACF30214.1| seryl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|268548615|gb|EEZ44033.1| seryl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268551226|gb|EEZ46245.1| seryl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268585902|gb|EEZ50578.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268588232|gb|EEZ52908.1| seryl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268625004|gb|EEZ57404.1| seryl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|268627283|gb|EEZ59683.1| seryl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291012979|gb|EFE04962.1| seryl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|317164654|gb|ADV08195.1| seryl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 431

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVAGSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYGALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|158335226|ref|YP_001516398.1| seryl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|189083555|sp|B0BYR8|SYS_ACAM1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|158305467|gb|ABW27084.1| seryl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 424

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 79/204 (38%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L ++D    +G+   + +E  + A   +  + 
Sbjct: 173 GAALERALIQFMLDQQVEAGYVEVLPPVLVNSDSLTATGQLPKFAEESFKCA---EDDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  +LP         FR E     R   G++R  +F   +  
Sbjct: 230 LSPTAEVPVTNLYRDEIINADDLPIFHCAYTPCFRREAGSYGRDTRGLIRLHQFNKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S   +  +  +   I   L L    ++  +G +G   +     E  + +   
Sbjct: 290 KL-VHPSTSAAEHEALVKNAAAILEALKLPYRVLQLCTGDLGFSAAKCYDLEVWLPSADC 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +F+DF     N  F +
Sbjct: 349 YREISSCSNFLDFQARRGNIRFKE 372


>gi|94497464|ref|ZP_01304034.1| seryl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94423095|gb|EAT08126.1| seryl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 425

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 10/162 (6%)

Query: 47  QKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + ++Q    G  E  VP L        +G+   + +++ +  D       
Sbjct: 171 ARLHRALAQFMLDQQTVANGYEETIVPLLVKDAALFGTGQLPKFAEDLFKTTD----GRW 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I     LP     +   FR E     R   G +R  +F   +  
Sbjct: 227 LIPTAEVSLTNLVADQIVPEERLPLRLTALTPCFRSEAGSAGRDTRGFIRQHQFEKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           +    PE S+  + +M  +   I   L L    M   +G +G
Sbjct: 287 TI-CRPEESEAEHERMVAAAEGILQALALPYRKMLLCTGDMG 327


>gi|319746002|gb|EFV98284.1| histidine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 438

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 128/426 (30%), Gaps = 41/426 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  +IR    +    E+  P  +  ++   S     D   K
Sbjct: 16  QKPKGTQDILPGESAKWQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTK 75

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 76  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYE-RPQ 131

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF       F      +      M      +F  LG+K++ +   S  +G   
Sbjct: 132 AG--RLREFHQVGVECFGSNNPATDVETIAMG---HHLFEDLGIKNVKLHLNS--LGSPE 184

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +    A          +   D            + S     +       +  D  +E 
Sbjct: 185 SRQAYRQALIDYLTPIREQLSKDSQRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDES 244

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
               FD++            +      G  Y       F     D +      G Y    
Sbjct: 245 SQAHFDAVCHMLDALNIPYIIDTNMVRGLDYYNHTIFEFITEIEDNELTICAGGRYDGLV 304

Query: 322 MRVVAA-------------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                               +    D +GI  P       + +  +         A   +
Sbjct: 305 S-YFGGPETPAFGFGLGLERLLLILDKQGISLPIENT-IDLYIAVLGT---EANLAALDL 359

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              +   G  V  D +G +I +QF  AD     + + +GS  V   +V +K+  T     
Sbjct: 360 AQSIRHQGFKVERDYLGRKIKAQFKSADTFNAKVIMTLGSSEVDSKEVSLKNNQTRQEVK 419

Query: 429 MSLEEV 434
           +S E +
Sbjct: 420 VSFENI 425


>gi|302761720|ref|XP_002964282.1| hypothetical protein SELMODRAFT_230438 [Selaginella moellendorffii]
 gi|300168011|gb|EFJ34615.1| hypothetical protein SELMODRAFT_230438 [Selaginella moellendorffii]
          Length = 604

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 13/157 (8%)

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKI 349
            +        +     +     G  R++  + E   D +G          +P  VAP K 
Sbjct: 430 FNKQVTKKSKEKFTPSVIEPSFGIGRIIYCLFEHCFDTRGGVDGQLNVFRFPPLVAPVKC 489

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++  +   +         I A+L + G     D  G  IG ++A  D +G P  + V   
Sbjct: 490 TVFPL-VQNPKLDGIARAISAKLREAGIGNKIDTTGRSIGRRYARTDEIGVPFAITV--- 545

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              D  V ++ R +  +  + LEEV++  +   +  R
Sbjct: 546 DSEDG-VTVRDRDSKDQIRVPLEEVVDLIADMSAGKR 581



 Score = 46.5 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           LPF   QI   FR+E+ PR G++R REF + +   F
Sbjct: 189 LPFGAAQIGQAFRNEIAPRQGLLRVREFTLAEIEFF 224



 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G++ + P G     NV +  R+        +E+  P L    +   SG  + +   M+R
Sbjct: 14 AGLFDYGPPGCAVKANVLSFWRQHFVVNDDLLEVDCPCLTPEAVLRASGHVEKFTDLMVR 73


>gi|262305731|gb|ACY45458.1| glu- + pro-tRNA synthetase [Eremocosta gigasella]
          Length = 134

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  + G+  +V   S+G+   R +  ++ +  D  
Sbjct: 15  SGRAIQAATSHHLGQNFSKMFQIVFEDPETGEKQFVHQNSWGLT-TRSIGVMVMTHGDDV 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQVCRDA---CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA +++ ++     +   +Q   D    C +    L   G     D       
Sbjct: 74  GLVLPPRVACYQVVIVPCGITVNLTEQEKCDLINKCREFENLLIDAGIRCKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|210631790|ref|ZP_03297032.1| hypothetical protein COLSTE_00919 [Collinsella stercoris DSM 13279]
 gi|210159910|gb|EEA90881.1| hypothetical protein COLSTE_00919 [Collinsella stercoris DSM 13279]
          Length = 430

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 65/215 (30%), Gaps = 13/215 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +           G  E   P + + ++   +G+   +  +         +   
Sbjct: 174 GATLDRALQNFFLNTHISRGFKEFIPPVIVNREIMYGTGQLPKFEDDAYHT----GEDQF 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    +     LP  +      FR+E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVALTNLHAGEVLDAAQLPLRYTAGTPCFREEAGSAGRDTRGIIRQHQFTKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F   PE S      M      I  +LGL    +   +G +G         E  + +   
Sbjct: 290 KF-ARPEESDAELESMVAEAEFILQQLGLPYRVISLCTGDLGFSARQTYDIEVWLPSYNA 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++    +  DF     N  + D  +        
Sbjct: 349 YKEISSCSNCGDFQARRANIKYRDPENFKGTRFVH 383


>gi|325293088|ref|YP_004278952.1| Seryl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060941|gb|ADY64632.1| Seryl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 427

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +   +    +G+   + +++ +  D         PT
Sbjct: 176 RALGQFMIDLHTSEHGYTEVSSPLMVRDEAMFGTGQLPKFSEDLFKTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVSGEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQV 221
             E +   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 291 DAESAVAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFSARKTYDLEVWLPGQNTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSVCGDFQARRMNARY 368


>gi|118443475|ref|YP_879284.1| seryl-tRNA synthetase [Clostridium novyi NT]
 gi|166219868|sp|A0Q3T2|SYS_CLONN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|118133931|gb|ABK60975.1| seryl-tRNA synthetase [Clostridium novyi NT]
          Length = 426

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 9/164 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +     +      G  E+  P + + D    +G+   + ++  ++    +  
Sbjct: 171 LGARLERAIINYFLDMHTIDHGYTEILPPYMVNRDSMTGTGQLPKFEEDAFKV---ENNG 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R+ I +  +LP         FR E     R   G++R  +F   +
Sbjct: 228 YFLIPTAEVPVTNMYRNEILNGDDLPIKHAAYSACFRAEAGSAGRDTRGLVRQHQFNKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              F + PE S     K+      +   LGL    +R   G +G
Sbjct: 288 LVKF-VKPEQSYDELEKLTNDAEDVLKGLGLPYRVVRICKGDLG 330


>gi|110806445|ref|YP_689965.1| histidyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|110615993|gb|ABF04660.1| histidine tRNA synthetase [Shigella flexneri 5 str. 8401]
          Length = 414

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 134/438 (30%), Gaps = 65/438 (14%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        +   ++         E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   YLPGETAIWQRIEGTLKNVLGSYCYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N  ++   P            H   Y       + I   FR E RP+ G  R R+F    
Sbjct: 64  NGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--RYRQFHQLG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVS----YLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLA 214
              F L           M  +     L IF  + L+ +     E+     D    F+   
Sbjct: 120 CEVFGLQGPDIDAELI-MLTARWWRALGIFEHVTLELNSIGSLEARANYRDALVAFLEQH 178

Query: 215 DTGETQVFCSKDFM------DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                +    + +       D   P      +D  +L   +++ +  + A      E   
Sbjct: 179 KEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAG 238

Query: 269 DSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKDHYVQMGSY 317
            +     +   RG++     +F       G++ ++     + G      G+        +
Sbjct: 239 IAY-TVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV--GF 295

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G  R+V  V   +                +  I + A     + A   +  RL     
Sbjct: 296 AMGLERLVLLVQAVN---------PEFKADPVVDIYLVASGADTQSAAMALAERL----- 341

Query: 378 DVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                   E +G +             FA AD  G  + V++G   V++    +K   +G
Sbjct: 342 ------RDELLGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG 395

Query: 425 IREDMSLEEVINYASHRF 442
            +  ++ + V  +     
Sbjct: 396 EQTAVAQDSVAAHLRTLL 413


>gi|56416461|ref|YP_153535.1| histidyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|81677670|sp|Q5PBP9|SYH_ANAMM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56387693|gb|AAV86280.1| histidyl tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 430

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 156/441 (35%), Gaps = 57/441 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP       ++  +  +   R G + +  P  +  D+++++     D  GK
Sbjct: 7   QPVRGTRDLLPEECYKFWHIRDVAHDIGERYGFVPVETPIFEFQDVFLKTLGDSSDIIGK 66

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR    ++  P   E+   + R  I     LP   +     FR E RP+    R
Sbjct: 67  EMYSFPDRGGDVLVLRP---ELTAAVARMLICERLTLPARLFTFGPVFRYE-RPQK--CR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS---- 207
            R+F   +   F     G       M ++Y  I   L L+S  ++ E   +G   S    
Sbjct: 121 QRQFHQINYEHFGA---GCTADAELMALAY-DILGALNLRS-EVQLEINSLGNQDSILGY 175

Query: 208 -------HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E    A + E      +      + S++     I+    ++  +    +  +
Sbjct: 176 RNSLLKYFEKHEHALS-EDSRRRLQTNPLRILDSKDRGDIAILCGAPVIADFYDDESNMT 234

Query: 261 DVHNEKLFDSLPENKR---VSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                +  D+L           RG++   G +F F T       A   G  G+   +   
Sbjct: 235 FNGVMQQLDNLGIPYTVNPRLVRGLDYYCGTVFEFKTTSLGSQDAVIAG--GRYDKLVAS 292

Query: 316 SYGIGA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
             G           +  +A++   SH  +          F ++ + +    +       +
Sbjct: 293 MGGGDVPAVGFAGGVERLASLAAYSHSTR----------FSVAFLPLG---EEAARCAMR 339

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQF--AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
               L   G  V  D + E++  +     AD  G  L +I+G + ++  +V  +H  TG+
Sbjct: 340 SAYELRGRGIRVLCDGVVEKL--KIGLKHADRSGVDLALILGDEEIAKGEVLCRHMDTGL 397

Query: 426 REDMSLEEVINYASHRFSNNR 446
           ++ +S+  + +Y S   SN +
Sbjct: 398 QQTVSISNLGDYVSGMESNAQ 418


>gi|302037512|ref|YP_003797834.1| seryl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300605576|emb|CBK41909.1| Seryl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 428

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 9/173 (5%)

Query: 46  GQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +      G  E+  P L +      +G+   +  ++ +L    D+ +
Sbjct: 169 GARLERALINYMLDMHTTRHGYREVLPPLLVNRTAMTGTGQLPKFEDDLFQL---RDEEL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I +  +LP  +      FR E     +   G++R  +F   + 
Sbjct: 226 FLIPTAEVPVTNLHREEIMAEESLPIRYTAYTPCFRREAGSYGKDTRGLIRLHQFNKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            +F   PE S     ++      I   LGL    +    G +G   +  + + 
Sbjct: 286 VAF-ARPEQSYDELERLTSHAEAILQGLGLHYRVITLCKGDMGFSAAKTYDIE 337


>gi|294637688|ref|ZP_06715966.1| histidine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291089164|gb|EFE21725.1| histidine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 424

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 140/421 (33%), Gaps = 41/421 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        + A +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTALWQPIEAALKQVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           M   + ++   LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLAGPDIDAEIIMMTARWWKV---LGIAE-HVALELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     + +  +   D            + S+N D   +++    +  +    +    
Sbjct: 178 RDALVAYLEQYKDQLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPRLSDYLDEESRIHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKD 309
               +L D             RG++     +F       G + ++     + G  A    
Sbjct: 238 AGLCRLLDDAGIAYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLVAQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKI 368
           H      + +G  R+V  V   + D      P       + LI +    Q       E++
Sbjct: 298 HATPAVGFAMGLERLVLLVQAVNPD----FLPQRT--VDVYLIAVGEGTQSAAMRLAEQL 351

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L ++     +     +   QFA AD  G  + +++G   V   +V +K   +G ++ 
Sbjct: 352 RDALPQMRLMTNYGGGNFK--KQFARADKWGARIALVLGESEVQSGQVNVKCLASGEQQS 409

Query: 429 M 429
           +
Sbjct: 410 V 410


>gi|115378515|ref|ZP_01465672.1| seryl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115364484|gb|EAU63562.1| seryl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 369

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 7/167 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +     +    +   + +   + G  E+  P L   +  + +G+   +  +  + +   
Sbjct: 108 FYKAALARLERALVTFMIDVHTQKGYTELLPPYLVLRETMMGTGQLPKFEDDAFKTS--G 165

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D      PT E  +T+     I     LP  +      FR E     R   G++R  +F 
Sbjct: 166 DPERFLIPTAEVPVTNYHSDEILEGGQLPLKYCAFSPCFRAEAGAAGRDTRGLIRQHQFH 225

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             +   F  TPE S      M      I  RLGL    M   +G +G
Sbjct: 226 KVELVKF-ATPETSLSELEGMTDDACDILRRLGLHHRVMLLCTGDMG 271


>gi|282902640|ref|ZP_06310533.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282918077|ref|ZP_06325827.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282921299|ref|ZP_06329017.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|283767799|ref|ZP_06340714.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282315714|gb|EFB46098.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282318362|gb|EFB48722.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282597099|gb|EFC02058.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|283461678|gb|EFC08762.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 428

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRCVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|254555575|ref|YP_003061992.1| seryl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|254044502|gb|ACT61295.1| seryl-tRNA synthetase [Lactobacillus plantarum JDM1]
          Length = 423

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G      V + + +    + G  E+  P L +A     +G++  + +++  + 
Sbjct: 163 FVYYKDAGALLERAVYSFMLDLHTQKQGYHEIIPPYLVNAQTMYGTGQFPKFKEDVYTVE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 M   PT E  +T+ + + I S   LP  F  +   +R E     R   G++R  
Sbjct: 223 SSG---MTLIPTAEVPLTNYYANEILSEDQLPTYFTAMTPCYRSEAGSAGRDTRGLIRMH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   +   PE S     K+  +   + H LGL    ++  +G  G   +  + V 
Sbjct: 280 QFHKVEMVKY-CKPENSYDELEKLTDNAEEVLHELGLAYHVIKLSTGDTGFSSAKTYDVE 338


>gi|258652148|ref|YP_003201304.1| glycyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258555373|gb|ACV78315.1| glycyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 460

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 147/441 (33%), Gaps = 52/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+         R+    + +    +    +WV SG   ++   ++   
Sbjct: 33  WDYGPLGVELKDNIKRQWWNAMIRSRDDIVGLDSSVILPRQVWVASGHVAAFVDPLVECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        EE      R       ++       +  +  E +   G++++    +
Sbjct: 93  SCHKRFRA-DHLEEEFAEKKGRQPENGLADIACPNCGTRGAW-TEPKEFNGLLKTYLGPV 150

Query: 158 KDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           +D      L PE ++     +FV+Y  +               G IG    +E       
Sbjct: 151 EDESGLHYLRPETAQ----GIFVNYNNVAAS---SRKKPPFGIGQIGKSFRNEITPGNFI 203

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
             T+ F   +   F  P  + ++                 A  +    E   +   +   
Sbjct: 204 FRTREFEQMEMEFFVKPGTDEEWHQYWIDTRTDWYVDLGIARDNLRQYEHPKE---KLSH 260

Query: 277 VSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYVQMG 315
            S R +++ + F+F              T + L   +   G D        G+     + 
Sbjct: 261 YSKRTVDIEYRFHFQGSEWGELEGIANRTDFDLKTHSEHSGVDLSYFEQESGERWTPYVI 320

Query: 316 SYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCR 362
               G  R + A +  ++                 +     +AP K +++ + + +    
Sbjct: 321 EPAAGVGRPMMAFLLEAYAQDEAPNTKGGVDVRTVLRLDPRLAPIKAAVLPL-SRNADLS 379

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                + A L K   +V +DD G+ IG ++   D +G P  + V     +D  V I+ R 
Sbjct: 380 PIARDLAASLRKSW-NVDFDDAGQ-IGRRYRRQDEIGTPFCLTVDFDTATDQAVTIRDRD 437

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +E + L++VI Y   R +
Sbjct: 438 TMSQERVGLDQVIGYLGARLA 458


>gi|189499024|ref|YP_001958494.1| glycyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|189494465|gb|ACE03013.1| glycyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 488

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQS 76
           L  R G I+  S         + + PLG +   N+  +            + +    + +
Sbjct: 25  LAKRRGFIYPSSEIYGGLSSCFDYGPLGSEMKKNIKDLWWISMTRKHRNIVGIDASIMMN 84

Query: 77  ADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHE-------EVMTDIFRSHIKSYR 126
             +W  SG   S+   M+       R     +     E       E       S+ +S  
Sbjct: 85  PTVWEASGHVSSFNDPMIDDKTTKRRYRADHLIENHIEKLRRDAKEEDAHRVSSYYESAS 144

Query: 127 ---NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF---VS 180
              +    FY I +   +E++           + +    F         S  K++    +
Sbjct: 145 EAEDQNRAFYDIIIA--EEIKAPDTGSADWTEVRQFNLMFQCNMGALAESSGKVYLRPET 202

Query: 181 YLRIFHRLGLKSIPMRAESGP--------IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              IF    +    +R  S          IG    +E +          F   +   F  
Sbjct: 203 AQGIF----VNFHNVRESSRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYFVK 258

Query: 233 PSENTDFDDIISLNSIVEQW------TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           P    +  +                                 D   + K     GIE   
Sbjct: 259 PGTQVESFESWREERFNWYIERLGITPEKLHWYKHDKLAHYADLAYDIKFEYPFGIEEIE 318

Query: 287 IFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
             +  T + L     F G +         + +   +     G+ R+  A++  S+    I
Sbjct: 319 GIHSRTDFDLKQHQEFSGKNMEYIDQTTNERYIPYVVETSAGSDRLFLALLCDSYTEDVI 378

Query: 339 --------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                    +   +AP K +++ +    ++  +   K+   L      V +DD G  IG 
Sbjct: 379 DGEQRVMMRFAPKIAPVKAAILPLMKKGEM-GEKAAKLRDEL-ATDFMVQYDDAG-SIGK 435

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++   D +G P    V    + D  V +++R T  +E + + +V  +   + 
Sbjct: 436 RYRRQDEIGTPFCFTVDHDSMEDHSVTVRYRDTAKQERIEISKVKEFLGAKL 487


>gi|329889968|ref|ZP_08268311.1| seryl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
 gi|328845269|gb|EGF94833.1| seryl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
          Length = 427

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 24/238 (10%)

Query: 20  IASHKLMLRT-GMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           +  H  +    G++   +     G    +  GQ A     +   + + Q  + G  E++ 
Sbjct: 140 VKDHADLGEALGLLDFEAAAKMSGSRFAVLKGQLARLERAIGQFMLDLQTGKHGYQEVAP 199

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--P 129
           P +   D    +G+   + +++ R         +  PT E  +T++ R  I S   +  P
Sbjct: 200 PYMVKDDAMFGTGQLPKFEEDLFR-----AGEHLLIPTAEVSLTNLVREQILSEDEVAQP 254

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                +   FR E     R   G++R  +F   +  S    PE S+  + +M      + 
Sbjct: 255 LRMAALTPCFRAEAGSAGRDTRGLIRQHQFSKVEMVSI-CRPEDSEAEHERMTGCAEAVL 313

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L L    +    G +G         E  + +     ++    +  DF     +  F
Sbjct: 314 QALELPYRKVLLCKGDMGFSAQKTYDLEVWLPSQNTYREISSCSNCGDFQARRMDARF 371


>gi|311113190|ref|YP_003984412.1| glycyl-tRNA synthetase subunit beta [Rothia dentocariosa ATCC
           17931]
 gi|310944684|gb|ADP40978.1| glycyl-tRNA synthetase beta subunit [Rothia dentocariosa ATCC
           17931]
          Length = 459

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/510 (14%), Positives = 145/510 (28%), Gaps = 133/510 (26%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            L      A+      + + G I+  S+  + + PLG +  +N+     +   R+ A  +
Sbjct: 6   TLDNVIALAKRRG--FVFQAGEIYGGSRSAWDYGPLGVELKENIRQQWWQRFVRSRADMV 63

Query: 70  SV--PTLQSADLWVESGRYDSYG------------------------------KEM---- 93
            +    +    +W  SG   ++                               + M    
Sbjct: 64  GLDSSVILPRPVWEASGHVATFMDPLVECLSCHRRQRQDHLIEAFEAKKGRAPENMGEVV 123

Query: 94  ---------------LR--------LADRNDKAMIYGPTHEEVMTDIFRSHI-KSYRNLP 129
                                      D  +      P   + +   F + +  + +  P
Sbjct: 124 CPNCGTRGEWTEPQNFSGLLKTYLGPVDNEEGLHFLRPETAQGIFVNFNNVVTAARKRPP 183

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F   QI   FR+E+ P   + R+REF   +   F    E  KH                 
Sbjct: 184 FGIGQIGKAFRNEITPGNFIFRTREFEQMEIEYFVHPDEADKH----------------- 226

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F    +           +  F     N +      +    
Sbjct: 227 --------------------FNAWVE---------DCWNWFVDLGINPENMRRFDVPEDD 257

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADG 307
               +      +           E   V+ R       +  G   ++S      F  A G
Sbjct: 258 RAHYSAGTIDIEYRFGFQGGEWGELMGVANR-----TDYDLGVHNEHSNAKLEYFDQASG 312

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINI 354
           + +   +     G  R + A +  ++                 +     +AP K +++ +
Sbjct: 313 ERYVPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDKRVVLKLDPRLAPVKAAVLPL 372

Query: 355 KAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               +   +   K+ A L      D  +D+ G  IG ++   D +G P  + V    + D
Sbjct: 373 SKKPE-LSEPAHKLAADLCGAWNID--YDEAGA-IGRRYRRQDEIGTPFCITVDFDTLED 428

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V I+ R T  +E ++L++V  Y + R +
Sbjct: 429 QAVTIRERDTMSQERVALDQVKAYLAARLA 458


>gi|59711237|ref|YP_204013.1| histidyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197336212|ref|YP_002155387.1| histidyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|75507079|sp|Q5E771|SYH_VIBF1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229470703|sp|B5FAX3|SYH_VIBFM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|59479338|gb|AAW85125.1| histidyl tRNA synthetase [Vibrio fischeri ES114]
 gi|197317702|gb|ACH67149.1| histidyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 422

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 138/429 (32%), Gaps = 32/429 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   ++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGSVKRVISAYGYNEVRMPIVEQTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIENGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R++  LG+    +R E   IG   +    
Sbjct: 122 YRQFHQVGVEVFGLNGPDVDAE---LIMMTARLWRELGIDQ-HVRLELNSIGSLEARANY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     + ++    +    
Sbjct: 178 RTALVAFLEQHLDVLDEDCKRRMHTNPMRVLDTKNPDVQAILGDAPKLSEYLDDDSKAHF 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYG 318
               +L D+     +V+ R +  G  +Y  T +   +  + A      G  +   +   G
Sbjct: 238 SGLCELLDAAGIQYQVNERLV-RGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLG 296

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV 375
                 V   +      + ++  +++    +     + +    +    A  K+   L + 
Sbjct: 297 GKTTPAVGFAMGL---ERLVLLMETLELTDVRRSVDVYMVTAGEGTLMAGMKLAESLREQ 353

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V     G     QF  AD  G  + +I+G   V++  V +K    G +  +   +
Sbjct: 354 VPGLRVMCHFGGGNFKKQFKRADNAGAAVALILGETEVAEQTVNVKDLRNGEQVTLPQSD 413

Query: 434 VINYASHRF 442
           V    +   
Sbjct: 414 VFTKLAELI 422


>gi|87123701|ref|ZP_01079551.1| putative seryl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86168270|gb|EAQ69527.1| putative seryl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 425

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  E+  P L ++     SG+   + +E  R AD +   + 
Sbjct: 173 GARLERALINFMLDLHTSKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCADDD---LW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I +   LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPVTSLHRDEIIAADQLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            F   P+ S+ ++ ++      +   L L    +   +G +G   
Sbjct: 290 WF-AHPDQSEEAHAQITADAESVLQALELPYRVLDLCTGDLGFSA 333


>gi|271967380|ref|YP_003341576.1| histidine--tRNA ligase [Streptosporangium roseum DSM 43021]
 gi|270510555|gb|ACZ88833.1| Histidine--tRNA ligase [Streptosporangium roseum DSM 43021]
          Length = 421

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 129/442 (29%), Gaps = 55/442 (12%)

Query: 34  QHSKGIYSWLPL----GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYD 87
           Q  KG + WLP          + + A +R      G   +  P  +   L+V       D
Sbjct: 4   QAPKGTFDWLPPRSEQALAVREALTAPVRR----AGYGYIETPVFEDTALFVRGVGESTD 59

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
              KEM    D+  +++   P     +      H      LP   +    +FR E R + 
Sbjct: 60  IVSKEMYTFEDKGGRSLTLRPEGTASVVRSVLQHGLHNGQLPVKLWYSGSQFRYE-RAQK 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GP 201
           G  R R F    A +              + V     +  LGL  + +   +       P
Sbjct: 119 G--RYRHFWQIGAEALGAEDPALDAE---LIVLAADGYAGLGLTGVRLLLNTLGDKECRP 173

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  +F+   D  E      +      +  +  +    ++   +V            
Sbjct: 174 GYRTALQDFLRALDLDEPTRQRIEINPLRVLDDKRPEVQAQLAGAPLVVDHLCEACKAYH 233

Query: 262 VHNEKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKGAD---G 307
                L  +         R             E  H    G++ ++     + G     G
Sbjct: 234 EEVRSLLTAAGVAYTDDPRLVRGLDYYTRTTFEFVHDG-LGSQSAVGGGGRYDGLSEMLG 292

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +G + +G  R + A+      G       + +  ++  + +    +  R     
Sbjct: 293 GPALPSVG-WALGVDRTLLAMEAEGLAGAE----TAESRVQVYGVPLG---EEARRRMFL 344

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   L + G D          G +        AD  G    VI+G + ++    ++K   
Sbjct: 345 LMTELRRAGLDA-----DMSFGGKGVKGAMKGADRSGASYAVILGERDIAAGSAQVKDLA 399

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           +G +  + L E++     R   
Sbjct: 400 SGDQTAVPLAEIVTTLKERLKK 421


>gi|298693331|gb|ADI96553.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 428

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VCF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|317050489|ref|YP_004111605.1| seryl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316945573|gb|ADU65049.1| seryl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 430

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 75/215 (34%), Gaps = 13/215 (6%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +    +   + +      G  E+  P L + +    +G+   + +++      N   
Sbjct: 168 MGARLERALINFMLDIHTGEHGYTEVQPPLLVNRESMTATGQLPKFEEDLFATEGGN--- 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           ++  PT E  +T+I R  I     LP  +      FR E     +   G++R  +F   +
Sbjct: 225 LLLIPTAEVPVTNIHRDEILPMDALPLNYTAYTPCFRREAGSYGKDTKGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F   P+ S      +      I  RL L    +   SG +G   +     E  V + 
Sbjct: 285 LVKFCH-PDTSYEELETLLHHAEVILQRLELPYRVVCLCSGDLGFSAAKTYDIEVWVPSQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++    +F DF        F D    N +V 
Sbjct: 344 NTFREISSCSNFEDFQARRGAIRFKDATGKNRLVH 378


>gi|254506761|ref|ZP_05118901.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219550342|gb|EED27327.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 422

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 138/428 (32%), Gaps = 30/428 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRSCIENSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFHQCGVEVFGLEGPDVDAELIMM---TARLWRELGID-KHVRLELNSIGSLEDRANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     +        D            + + N  V+         SD   E+  +  
Sbjct: 178 RTALIEFLEQHIDILDDDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKEHF 237

Query: 272 -PENKRVSARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHYVQMGSYGI 319
               + + A GIE         G  Y         +  + A      G  +   +   G 
Sbjct: 238 AGLCELLDAAGIEYTVNERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGG 297

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV- 375
            A   V   +      + ++  +++    +     + +    +    A  K+   L +  
Sbjct: 298 KATPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYMVTAGEGTMLAGMKLAETLREQV 354

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V     G     QF  AD +G  + +++G   V+D+ V +K  + G ++ +S  +V
Sbjct: 355 PGLRVMSHFGGGNFKKQFKRADKVGAAVALVLGENEVADNTVVVKDLIGGTQDTLSQADV 414

Query: 435 INYASHRF 442
           +   +   
Sbjct: 415 VAKLAELV 422


>gi|261212140|ref|ZP_05926426.1| histidyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260838748|gb|EEX65399.1| histidyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 422

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 149/439 (33%), Gaps = 54/439 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  +++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+    +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGIAE-HVRLELNSIGSLEARA 175

Query: 210 FIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A     + + +    D            + S+N D   I+     +  +    +  
Sbjct: 176 NYRSALIEYLEQYQNVLDEDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQ 235

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--------- 305
                 +L D+        +   RG++     +F + T+ SL    T  G          
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQ 294

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        + +G  R+V  ++  +     +          + +  + A  +    A
Sbjct: 295 LGGKPTPAV--GFAMGLERLV--LMMETLGNTEVR-------RSVDVYMVTAG-EGTMMA 342

Query: 365 CEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K+  +L +   G  V     G     QF  AD +G  + +++G   V+   V +K   
Sbjct: 343 GMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLA 402

Query: 423 TGIREDMSLEEVINYASHR 441
            G +  ++  EV    +H 
Sbjct: 403 GGEQSTVAQAEVAQLLAHL 421


>gi|251781086|ref|ZP_04824006.1| histidine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085401|gb|EES51291.1| histidine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 417

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 125/422 (29%), Gaps = 35/422 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    R+     G  E+  P  +  +L++       D   K
Sbjct: 6   QAPKGTKDMLPQDAYKWHYVENTFRDVVKAYGIREIRTPMFEHTELFLRGVGDTTDIVQK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+ ++++   P         F  +       P   + I   FR E        R
Sbjct: 66  EMYTFNDKGNRSVTLKPEGTAPAVRAFIENRLFNEAQPTKLFYITPTFRYE---NVQKGR 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP----------MRAESGP 201
            R+F       F            K+    +    +LGLKS+            RA+   
Sbjct: 123 LRQFHQCGIEIFGSKEPTMDVEAIKVA---MDTLSKLGLKSLSLHINNLGCPTCRAKYNE 179

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E            F                     +   +           + 
Sbjct: 180 ALKKFLEENYEDLCDTCKSRFEKNPMRILDCKERKCHEITKNAPQILDYVCEECETHFNK 239

Query: 262 VHNEKLFDSLPEN-KRVSARGIEVGH--IFYF-GTKYSLPMSATFKG---ADGKDHYVQM 314
           V        +P    +   RG++     IF      +++     +       G      +
Sbjct: 240 VKEYLDILEIPYIVDQGIVRGLDYYTKTIFEIINDDFTVCGGGRYDKLVEELGGPEMPAV 299

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G + IG  R++  +     + +GI  P+      +  + I A     +    K+   L  
Sbjct: 300 G-FAIGEERIIMTL-----ENEGIEIPNEN----MVDLYIGARGDAEKKYAFKLAHDLRS 349

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G     + MG  I ++   A+ +G     I+G   + ++++ +K    G    +SL+ +
Sbjct: 350 LGVKCEINHMGRSIKAEMKYANKIGSKFTTILGEDELENNRINLKRMEDGEIFTLSLDNI 409

Query: 435 IN 436
             
Sbjct: 410 EE 411


>gi|152971375|ref|YP_001336484.1| histidyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|330007780|ref|ZP_08306077.1| histidine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|150956224|gb|ABR78254.1| histidyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328535324|gb|EGF61809.1| histidine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 414

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 134/438 (30%), Gaps = 65/438 (14%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   YLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N  ++   P            H   Y       + +   FR E RP+ G  R R+F    
Sbjct: 64  NGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRHE-RPQKG--RYRQFHQIG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A  F L           + +   R +  LG+    +  E   IG   +      A     
Sbjct: 120 AEVFGLQGPDIDAE---LIMLTARWWRELGISE-HVSLELNSIGSLEARANYRDALVAYL 175

Query: 220 QVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           + F  K   D            + S+N D   +++    +  +    +         L D
Sbjct: 176 EQFTDKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKAHFAGLCALLD 235

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM----RVV 325
                  V+ R +  G  +Y  T +      T  G+ G       G Y         R  
Sbjct: 236 DAGIRYTVNQRLV-RGLDYYNRTVFEWV--TTSLGSQGT--VCAGGRYDGLVEQLGGRAT 290

Query: 326 AAVIESSHDGKGIIWPDSVAP-------FKISLINIKAHDQ-VCRDACEKIYARLSKVGC 377
             V  +    + ++   +V P         I L+      Q       E++   L     
Sbjct: 291 PGVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQVRDAL----- 345

Query: 378 DVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                      G +             FA AD  G  + ++VG   ++D  V +K   +G
Sbjct: 346 ----------PGVKLMTNHGGGNFKKQFARADKWGARVALVVGESEIADGNVVVKDLRSG 395

Query: 425 IREDMSLEEVINYASHRF 442
            +  ++ E V  +     
Sbjct: 396 EQTTVTQESVAAHLRTLL 413


>gi|159184878|ref|NP_354691.2| seryl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|30173186|sp|Q8UEQ2|SYS_AGRT5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|159140158|gb|AAK87476.2| seryl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 427

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +   +    +G+   + +++ R  D         PT
Sbjct: 176 RALGQFMIDLHTSEHGYTEVSSPLMVRDEAMFGTGQLPKFAEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVSGEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQV 221
             E +   + +M      +  RLGL    +   +G +G         E  +       ++
Sbjct: 291 DAESAVAEHERMTACAEEVLKRLGLHFRTLTLCTGDMGFSARKTYDLEVWLPGQNTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSVCGDFQARRMNARY 368


>gi|240113545|ref|ZP_04728035.1| seryl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268599610|ref|ZP_06133777.1| seryl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268583741|gb|EEZ48417.1| seryl-tRNA synthetase [Neisseria gonorrhoeae MS11]
          Length = 431

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVAGSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYGALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|160946398|ref|ZP_02093607.1| hypothetical protein PEPMIC_00358 [Parvimonas micra ATCC 33270]
 gi|158447514|gb|EDP24509.1| hypothetical protein PEPMIC_00358 [Parvimonas micra ATCC 33270]
          Length = 463

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 118/374 (31%), Gaps = 89/374 (23%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++  + S + +PF   Q+   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNIARTSRKKVPFGIAQVGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+RE                              F ++ L+                
Sbjct: 215 FTFRTRE------------------------------FEQMELEFFC------------- 231

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                    GE      + +  +   S N      ++  ++  +       +        
Sbjct: 232 -------KPGEDL----EWYEYWKNYSFNWLLSLGMNEETLRLRDHEKEELSFYSKATCD 280

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGI 319
            + L         GI         T Y L       G D         + +        +
Sbjct: 281 IEFLFPFGWGELWGI------ADRTDYDLSRHIEVSGEDLRYIDPVTNEKYIPYCIEPSL 334

Query: 320 GAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           GA RV  A + +++D + I             ++APFK +++ +        +  ++IY 
Sbjct: 335 GADRVALAFLCNAYDEEEIGEGDVRTVLRLHPALAPFKAAILPLTKK---LSEKSDEIYD 391

Query: 371 RLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            LSK    D    D+   IG ++   D +G P  + V    + D  V ++ R T  +E +
Sbjct: 392 ELSKYFMIDT---DVSGSIGKRYRRQDEIGTPFCITVDFDTLEDECVTVRFRDTMEQERI 448

Query: 430 SLEEVINYASHRFS 443
            + E+ ++      
Sbjct: 449 KISELKDFIEKSLE 462


>gi|52078504|ref|YP_077295.1| seryl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52783868|ref|YP_089697.1| seryl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319648532|ref|ZP_08002747.1| seryl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|67461715|sp|Q65PL0|SYS_BACLD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|52001715|gb|AAU21657.1| seryl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346370|gb|AAU39004.1| SerS [Bacillus licheniformis ATCC 14580]
 gi|317389380|gb|EFV70192.1| seryl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 425

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEYGYTEVIPPYMVNRASMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S   LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNLHRDEILSADELPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHE 209
           +F   +   F + PE S     K+     ++   L L    M   +G +G         E
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNQAEKVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +     ++    +F  F     N  F
Sbjct: 339 VWIPSQNTYREISSCSNFEAFQARRANIRF 368


>gi|224541605|ref|ZP_03682144.1| hypothetical protein CATMIT_00776 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525475|gb|EEF94580.1| hypothetical protein CATMIT_00776 [Catenibacterium mitsuokai DSM
           15897]
          Length = 433

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 131/449 (29%), Gaps = 58/449 (12%)

Query: 31  MIHQHSK-------GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           M  +          G     P   +    +  ++R         EM  P  +  +L+  +
Sbjct: 1   MFKKEEPMKYNRPRGTVDITPENSEKWIEMEQLLRTVAANYNVKEMRTPIFEHTELFSRA 60

Query: 84  --GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF---YQIQLK 138
                D   KEM    D+ D+++   P     +   +         LP      Y +   
Sbjct: 61  VGDTTDVVTKEMYTFKDKGDRSLTLRPEGTAGIARAYVEDKMY--ALPEKLQKVYYMGPM 118

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FR E RP+ G  R R+F         +  E        M ++   I   LG+K+I +   
Sbjct: 119 FRYE-RPQNG--RQRQFHQFGVEMLGV--ESPYVDVECMLMAVT-IVEALGIKNIKLHIN 172

Query: 199 SGPIGGDLSHEFIVLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           S  +G D S      A             +D       +     D  +   + +      
Sbjct: 173 S--LGDDESRTAYREALKDHFRPVLNDLCEDCQARFEKNPLRILDCKVDAKNPIMTSAPR 230

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                    +  FD +            V      G  Y           D K       
Sbjct: 231 TIDYLSEKAKAHFDKVCSLLDDLEIEYVVDTNLVRGLDYYSHTVFEIISDDPKLGAGSTV 290

Query: 316 S---------------------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                                 +  G  R++ A+ +   +  GI          + ++ +
Sbjct: 291 GGGGRYNGLVEELGGPATPGVGFAFGMERLMLALDDEEDEENGI---------DVYVMPL 341

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  RD   +I   L   G     D  G  +  QF  +D  G  L +I+G   V   
Sbjct: 342 G---DEARDLAMQIITMLRANGFTCDMDYAGRGLKGQFKSSDRFGAHLSIIIGEDEVKGE 398

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V I+   +  + ++ LE++++Y  + + 
Sbjct: 399 YVNIRCNHSKEQSEVKLEDILSYIENHYE 427


>gi|297199539|ref|ZP_06916936.1| glycyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197713535|gb|EDY57569.1| glycyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 460

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 148/450 (32%), Gaps = 72/450 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++      L 
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSY--RNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
           +       +   H E   +  + H       ++       + +F  E +   G++ +   
Sbjct: 90  ECTSCHKRFRADHLEEAYEAKKGHAPENGLADVNCPNCGNKGQF-TEPKQFSGLLSTHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSH 208
                     L PE ++            IF       + + +   P      +G    +
Sbjct: 149 PTQDSGSVAYLRPETAQ-----------GIFT--NFAQVQVASRKKPPFGIAQMGKSFRN 195

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E         T+ F   +   F  P E+  + +       +EQ    Y           +
Sbjct: 196 EITPGNFIFRTREFEQMEMEFFVKPGEDEKWQEYW-----MEQRWNWYTGLGLREENMRW 250

Query: 269 DSLPENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD------- 306
              P  K    S R  ++ + F FG             T Y L   +   G D       
Sbjct: 251 YDHPAEKLSHYSKRTADIEYRFQFGGNEWGELEGVANRTDYDLTAHSKASGQDLFFYDQE 310

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLI 352
            G+     +     G  R + A +  ++                 +     +AP K++++
Sbjct: 311 AGERWTPYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGKLEKRTVLRLDHRLAPVKVAVL 370

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +  + +      + +   L +   ++ +DD G  IG ++   D +G P  V V    + 
Sbjct: 371 PLSRNAE-LSPKAKGLAQALRQ-NWNIEFDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLD 427

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D+ V ++ R +  +E +SL+++  Y + R 
Sbjct: 428 DNAVTVRERDSMKQERVSLDQIEGYLAARL 457


>gi|262274498|ref|ZP_06052309.1| seryl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262221061|gb|EEY72375.1| seryl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 428

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 19/241 (7%)

Query: 17  DAEIASHKLM--LRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIE 68
           D E+  H  +  L  G+    +    G    +  GQ A     +   + +      G  E
Sbjct: 133 DFEVKDHVDLGELTGGLDFASAVKLSGSRFIVMKGQMARLHRAIAQFMLDLHTTEHGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           M VP L +AD    +G+   +G+++            M   PT E  +T++ R  I    
Sbjct: 193 MYVPYLVNADSLFGTGQLPKFGEDLFHTKPATEEGVGMSLIPTAEVPLTNMVRDTIVEEA 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     R   G++R  +F   +     + PE S  +  ++     
Sbjct: 253 DLPIRMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VKPEDSMAALEELTGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 312 KVLQLLKLPYRKVILCTGDMGFGSAKTYDLEVWVPAQGTYREISSCSNMTDFQARRMQAR 371

Query: 239 F 239
           F
Sbjct: 372 F 372


>gi|154493369|ref|ZP_02032689.1| hypothetical protein PARMER_02706 [Parabacteroides merdae ATCC
           43184]
 gi|154086579|gb|EDN85624.1| hypothetical protein PARMER_02706 [Parabacteroides merdae ATCC
           43184]
          Length = 514

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 112/363 (30%), Gaps = 70/363 (19%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTSDGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF                                                     E  
Sbjct: 261 MREFEQM--------------------------------------------------EMQ 270

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                GE      +        +    +   + L +   ++          +     +  
Sbjct: 271 FFVRPGE------EMEWFKQWKATRLKWHQAMGLGNEKYRYHDHEKLAHYANAATDIEFE 324

Query: 272 PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    GI     F      K+S      F     + +   +    IG  RV  +V+
Sbjct: 325 MPFGFKEVEGIHSRTNFDLSQHEKFSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSVM 384

Query: 330 ESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             S+  + +           P ++AP K++++ +   D    +  E+I   L +      
Sbjct: 385 AGSYCEETLENGETRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIMKML-RFDFRCQ 442

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+  + IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  S 
Sbjct: 443 YDE-KDSIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVSIDKLHDIISE 501

Query: 441 RFS 443
           + S
Sbjct: 502 KVS 504


>gi|300871818|ref|YP_003786691.1| histidyl-tRNA synthetase class IIa [Brachyspira pilosicoli 95/1000]
 gi|300689519|gb|ADK32190.1| histidyl-tRNA synthetase class IIa [Brachyspira pilosicoli 95/1000]
          Length = 416

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/412 (14%), Positives = 130/412 (31%), Gaps = 39/412 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
           L+ +   I+E     G   +  P  +  DL+        D  GKEM    DR  +++   
Sbjct: 22  LEFIENKIKEIVRLYGYKRIRTPLFEYTDLFTRGIGEGTDIVGKEMFTFEDRGGRSLTLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +           + +   +R E RP+ G  R REF          T 
Sbjct: 82  PEGTASVARAYVENSLQNEYAINKLFYLGTMYRAE-RPQKG--RYREFNQFGIECIGGTS 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKD 226
                    +    + I    G+ ++ +   + G      ++   +    GE +    + 
Sbjct: 139 PVIDAE---VIALNINILKEFGIDNVNLLINTVGCSNCKPNYNRALREAIGERKNELCET 195

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +    +     D        + +    +        ++ FDSL        +   + +
Sbjct: 196 CQNRYENNILRILDCKNEKCKEILKDIPKFYDYVCDECKEHFDSLCNELTKINQNFTIDN 255

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-------------------AMRVVAA 327
           +   G  Y    +   +          +G                         +  +  
Sbjct: 256 MLVRGLDYYTKTAFEVQTNALGSQSAILGGGRYDNLIGLFNSNKDVPAVGSAMGLERLLI 315

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V+E++++    I  D +    + +I  K       +    I   L        +D   + 
Sbjct: 316 VLENNNN----IINDRL---DVFVIAFKETQNEVLN----IMQLLRAKNISCDFDYNIKS 364

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           I +QF  A+       +IVG + + ++K ++K+  T    D++L ++  + +
Sbjct: 365 IKNQFKSANKRNAKYALIVGEEELKNNKFKLKNMDTSEERDVALSDIAKFIN 416


>gi|254382919|ref|ZP_04998275.1| glycyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194341820|gb|EDX22786.1| glycyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 460

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 147/443 (33%), Gaps = 58/443 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +         + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWKAMVTGREDIVGLDSSVILAPEVWQASGHVATFSDPLTECT 92

Query: 98  DRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
             + +         +E     +  + +    ++      ++ +F  E +   G++ +   
Sbjct: 93  SCHKRHRADHLEEAYEAKHGRLPANGL---ADINCPNCGVKGQF-TEPKQFSGMLETHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVL 213
                     L PE ++  +          F ++   S          +G    +E    
Sbjct: 149 PTQDTGSKAYLRPETAQGIFTN--------FAQVQTTSRKKPPFGIAQMGKSFRNEITPG 200

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                T+ F   +   F  P E+  + +                  +    E   +   +
Sbjct: 201 NFIFRTREFEQMEMEFFVKPGEDEQWQEYWMAERWNWYRGLGIREENIRWYEHPKE---K 257

Query: 274 NKRVSARGIEVGHIFYFG-------------TKYSLPM-------SATFKGAD-GKDHYV 312
               S R  ++ + F FG             T + L           T+   + G+ +  
Sbjct: 258 LSHYSKRTADIEYRFNFGGNEFSELEGVANRTDFDLKAHSAASGQDLTYFDQEAGERYTP 317

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R + A +  +++                +     +AP K++++ +  + Q
Sbjct: 318 YVIEPAAGVNRAMLAFMLDAYNEDEAPNAKGVMEKRTVMRLDPRLAPIKVAVLPLSRNPQ 377

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + + A L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++
Sbjct: 378 -LSPKAKGLAADLRK-NWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVR 434

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  +E +SL+++ +Y   R 
Sbjct: 435 ERDTMKQERVSLDQIQSYLGSRL 457


>gi|94542963|gb|ABF33012.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546851|gb|ABF36898.1| Histidyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 438

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 144/435 (33%), Gaps = 61/435 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R+  ++    E+  P  +  ++   S     D   K
Sbjct: 16  QKPKGTQDILPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTK 75

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 76  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 131

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +  +LG+K + +   S       
Sbjct: 132 AG--RLREFHQIGVECFGAANPATDVETIAM--AYH-LLEKLGIKDVTLHLNSLGSPESR 186

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D     +     D +   S 
Sbjct: 187 SAYRQTLIDYLTPMRDQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQ 246

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYF-----GTKYSLPMSAT 301
                            +  D          RG++     IF F     G+  ++     
Sbjct: 247 AHFEAVKAML-------EALDIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGR 299

Query: 302 FK---GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G  G       G +G+G  R++  +     + +G+  P       + L  +    
Sbjct: 300 YDSLVGYFGGPETPGFG-FGLGLERLLMII-----EKQGLALPIE-TEMDVYLAVLGDG- 351

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   + + G     D +G +I +QF  AD     L + +G   V   K  I
Sbjct: 352 --ANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVI 409

Query: 419 KHRLTGIREDMSLEE 433
           K+  +    ++S E+
Sbjct: 410 KNNRSRQEVEVSFED 424


>gi|293376411|ref|ZP_06622645.1| serine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325839304|ref|ZP_08166770.1| serine--tRNA ligase [Turicibacter sp. HGF1]
 gi|292644967|gb|EFF63043.1| serine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325490586|gb|EGC92901.1| serine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 424

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 15/221 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +    + + + +      G  E+  P + +      +G+ 
Sbjct: 154 RAGKI--TGSRFAVYKGLGARLERALISFMLDLHTGDHGYTEILPPVIVNRASMTGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             +  +  +L D +       PT E  +T++ R  I S   LP  +      FR E    
Sbjct: 212 PKFEDDAFKLVDSD---YFLIPTAEVPVTNLHRDEILSADQLPIKYTAYSPCFRAEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F + PE S      +  +  ++   LGL    +   +G I
Sbjct: 269 GRDTRGIIRQHQFNKVELVKF-VKPEDSYQELESLTANAEKVLQLLGLPYRVIELCTGDI 327

Query: 203 GGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G   +     E  + +     ++    +F DF     N  F
Sbjct: 328 GFSAAKTYDIEVWLPSYNAYKEISSCSNFEDFQARRANIKF 368


>gi|167623300|ref|YP_001673594.1| histidyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189082310|sp|B0TLI5|SYH_SHEHH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|167353322|gb|ABZ75935.1| histidyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 424

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 148/435 (34%), Gaps = 42/435 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +  ++RE     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKLETVLRETVGSYGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGG 204
            R+F       + +           + +   +++ +LG+              E      
Sbjct: 122 YRQFHQFGVEVYGIPTADIDAE---VLMLSAKLWEKLGITEHVTLELNTLGDVEERAAYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D    F+        +    + + +    + S+N D   +++   ++  +      +   
Sbjct: 179 DALIAFLEQHKEVLDEDSQRRMYSNPLRVLDSKNADVQALLADAPVLMDYFGEDTRSHFS 238

Query: 263 HNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKGADGKD--H 310
           H  +L +++           RG++     +F       G++ ++     + G  G+    
Sbjct: 239 HLCELLEAVGIQYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVGQLGGK 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                 + +G  R+V  ++  + +    I P       + +  +  +   CR    KI  
Sbjct: 299 PTPAVGFAMGLERIV--LLLETLELDKDIGPS----VDVYVTAMGDN---CRVEAIKIAQ 349

Query: 371 RLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIRE 427
            L                  +     AD  G  + +++G   +++++V +KH R    +E
Sbjct: 350 ELRASLPTAKVMSHCGGGNFKKQMKRADKSGATVALVIGEDELANNQVAVKHLREDKAQE 409

Query: 428 DMSLEEVINYASHRF 442
            ++ + +  Y +   
Sbjct: 410 LVARDALATYIAELI 424


>gi|312882486|ref|ZP_07742227.1| seryl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369886|gb|EFP97397.1| seryl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 435

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEIGGGLDFASATKLTGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +G+++        ++ D + + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGEDLFHTEPLTEKVNDEDPRKLSLIPTAEVPLTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITDEDELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMDALEQL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TAHAEKVLQLLELPYRKVILCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|161349959|ref|YP_047472.2| seryl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|146345523|sp|Q6F8G5|SYS_ACIAD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 423

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 85/250 (34%), Gaps = 19/250 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDAERL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPEDSMQALEELTGHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              LGL    +    G +G   +     E  V +     ++    +  DF        + 
Sbjct: 310 LQALGLPYRKILLCGGDMGFGSTKTYDLEVWVPSQNTYREISSCSNMGDFQARRMMARYR 369

Query: 241 DIISLNSIVE 250
                  +V 
Sbjct: 370 TDQKKTELVH 379


>gi|258517403|ref|YP_003193625.1| seryl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257781108|gb|ACV65002.1| seryl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 423

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 9/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    +   +E+  P + + D    +G+   + ++M +L + 
Sbjct: 164 FYKGLGARLERALINFMLDLHTSQHNYVEIFPPFIANQDSMQGTGQLPKFAEDMFKLENT 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           N       PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 224 N---YYLIPTAEVPVTNLYREEILDGEKLPICHVAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +   F   P+ S    +K+ ++  ++   L L    +   +G +G   +  F
Sbjct: 281 NKVEMVKFCH-PDTSFEELDKLVLNAEKVLQLLELPYRLIILCTGDLGFSSAKTF 334


>gi|313107648|ref|ZP_07793831.1| seryl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|310880333|gb|EFQ38927.1| seryl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 426

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 17/241 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS----KGIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D E+  H  L  R G +   +     G    L  G   +    +   +        G  E
Sbjct: 133 DFEVKDHVALGERHGWLDFETAAKLSGARFALMRGPIARLHRALAQFMINLHTAEHGYEE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P L  A     +G+   + +++ ++    +  +   PT E  +T+I    I   + L
Sbjct: 193 AYTPYLVQAPALQGTGQLPKFEEDLFKIGRDGEADLYLIPTAEVSLTNIVSGQILDAKQL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     R   G++R  +F   +     + P  S  +   +  +  R+
Sbjct: 253 PLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMVQI-VDPATSYEALEGLTANAERV 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              L L    +   +G +G   +     E  V +     ++    +  DF      T + 
Sbjct: 312 LQLLELPYRVLALCTGDMGFGATKTYDLEVWVPSQDKYREISSCSNCGDFQARRMQTRYR 371

Query: 241 D 241
           +
Sbjct: 372 N 372


>gi|257454217|ref|ZP_05619487.1| seryl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257448390|gb|EEV23363.1| seryl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 421

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 19/230 (8%)

Query: 17  DAEIASHKLMLR-TGMI-HQHSK---GIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  +    G++  + +    G    +  GQ  K    + A +     ++ G  E
Sbjct: 133 DFEVKDHSDLGENLGLLDFEMAAKLTGSRFSVLKGQLAKLNRALIAFMLTTHTDKYGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           M VP + +AD  + +G+   + +++ +L  R +K     PT E  +T+  R  I     L
Sbjct: 193 MYVPYMVNADSLLGTGQLPKFEEDLFKL--RGEKEYYLIPTSEVPLTNSVRDKILDPEAL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   G++R  +F   +     + PE S  +   M      I
Sbjct: 251 PIKVTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMVQI-VHPETSMQALEDMTGQAEYI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             +LGL    +    G +G         E  + + T   ++    +  DF
Sbjct: 310 LQQLGLPYRVIVLCGGDMGFSAVKTYDIEVWLPSQTTYREISSCSNCGDF 359


>gi|255293004|dbj|BAH90101.1| glycyl-tRNA synthetase [uncultured bacterium]
          Length = 492

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 149/452 (32%), Gaps = 72/452 (15%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +  + +W  SG   ++   ++   
Sbjct: 61  WDYGPYGVELKENIKRQWWRSMVTGRDDVVGLDSSVILPSRVWEASGHLKAFVDPLIECK 120

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR------DELRPRFGVMR 151
             + +        E+ + + +                I            E R   G+++
Sbjct: 121 SCHKR------FREDHLQEEYAEKKGIDNPDTVDTALIACPNCGAKEQWSEPRQFNGLLK 174

Query: 152 SREFL---MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           +  FL     ++    L PE ++     +FV++  +     +K        G +G    +
Sbjct: 175 T--FLGPVEDESGLHYLRPETAQ----GIFVNFANVMTTARMKP---PFGIGQVGKSFRN 225

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E         T+ F   +   F  P  + ++        +       Y       +    
Sbjct: 226 EITPGNFIFRTREFEQMELEFFVKPGSDEEWHQHWIDARVDW-----YVDLGIDRDNLRL 280

Query: 269 DSLPENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGADGKDHY-- 311
              P+ K    S R +++ + F F              T + L       G + +  Y  
Sbjct: 281 YEHPQEKLSHYSKRTVDIEYRFRFQGSEWGELEGIANRTDFDLSTHGEHSGKEKQMQYFD 340

Query: 312 --------VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKIS 350
                     +     G  R + A +  ++  +              +     +AP K++
Sbjct: 341 QQANERWTPYVIEPSAGLTRSLMAFMVDTYAEEEAPNAKGGTDIRTVLKLDKRLAPVKVA 400

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + + ++      + + A L K   +V +DD    IG ++   D +G P  + V  + 
Sbjct: 401 VLPL-SRNEQLSPKAKDLAAALRK-NWNVDFDDAQA-IGRRYRRQDEIGTPYCITVDFET 457

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + D  V I+ R T  +E ++L++V  Y + R 
Sbjct: 458 LEDQAVTIRDRDTMAQERVALDQVEGYLAQRL 489


>gi|58038523|ref|YP_190487.1| histidyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|81672761|sp|Q5FUR8|SYH_GLUOX RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|58000937|gb|AAW59831.1| Histidyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 415

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 128/414 (30%), Gaps = 61/414 (14%)

Query: 58  REEQNRTGAIEMSVPT-----LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
           R      G  E S P      + S  L   S   D   KEM    DR  +++   P    
Sbjct: 29  RRVLRTYGFEEWSTPIFEDTRVFSRTLGETS---DVVSKEMYTFEDRGGESITLRPEGTA 85

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
            +     ++    ++LP   +     FR E RP+ G  R R+F    A            
Sbjct: 86  AICRALVTNGL-TQSLPQKVFYHGSMFRYE-RPQKG--RYRQFHQIGAELIGAESPLRDA 141

Query: 173 SYNKMFVSYLRIFHRLGL-KSIPMRAES------------------GPIGGDLSHEFIVL 213
               M      I   LGL   + +   +                        LS E  V 
Sbjct: 142 ETIAMAQ---DILRELGLGDHVTLELNTLGDLASRQAWREALVAYFRDHADALSEESRVR 198

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    ++  SK   D  +      F D ++ +S                + + F     
Sbjct: 199 LEANPLRILDSKSEQDRKLLDAAPAFADYLNDDS-------RQFWDGLRSSLQAFGVDFV 251

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV----VAAVI 329
                 RG++    +Y  T +      +  GA G    +  G Y     ++    + A+ 
Sbjct: 252 ENPRIVRGLD----YYSHTAF--EFVTSKLGAQGT--VLAGGRYEGLVEQMGGPAIPAIG 303

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +    +  +  DSV      +  +   D+    A   I   L   G         E  G
Sbjct: 304 WAGGIERLAMLLDSVPELPAGIALVPMGDEAVLKAA-SIARVLRSAGLRAEI----ETRG 358

Query: 390 SQFAVADLL---GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +     + +   G    +++G + ++ + V+++   +  ++++ + ++    S 
Sbjct: 359 NMKKRMERVVKSGASHAIVLGDEEIAKNIVQLRDLSSREQQEVPVADLARILSA 412


>gi|330972886|gb|EGH72952.1| seryl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 426

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|217316851|gb|ACK37831.1| putative glutamyl-prolyl tRNA synthetase [Praebebalia longidactyla]
          Length = 134

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  + K+  +    S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETKEKQFAYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +        A       AC  + A L   G     D   
Sbjct: 74  GLVLPPRVASIQAIIMPVGITAKTTEADKAALYQACNDLEAELKADGVRTKCDLKD 129


>gi|110798993|ref|YP_694487.1| seryl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|123050143|sp|Q0TV53|SYS_CLOP1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|110673640|gb|ABG82627.1| seryl-tRNA synthetase [Clostridium perfringens ATCC 13124]
          Length = 425

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +   ++     ++     G  E+  P + + D    +G+   + ++  ++    +  
Sbjct: 171 MGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPKFEEDAFKV---ENNG 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R+       LP         FR E     R   G++R  +F   +
Sbjct: 228 YFLIPTAEVPVTNMYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              F   PE S    +K+      +   LGL    +R   G +G
Sbjct: 288 LVKF-CKPEQSYEELDKLVQDAESVLQGLGLPYRIVRICKGDLG 330


>gi|262402855|ref|ZP_06079416.1| histidyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262351637|gb|EEZ00770.1| histidyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 422

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 149/439 (33%), Gaps = 54/439 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  +++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPAQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+    +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGIAE-HVRLELNSIGSLEARA 175

Query: 210 FIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A     + + +    D            + S+N D   I+     +  +    +  
Sbjct: 176 NYRSALIEYLEQYQNVLDEDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQ 235

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--------- 305
                 +L D+        +   RG++     +F + T+ SL    T  G          
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQ 294

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        + +G  R+V  ++  +     +          + +  + A  +    A
Sbjct: 295 LGGKPTPAV--GFAMGLERLV--LMMETLGNTEVR-------RSVDVYMVTAG-EGTMMA 342

Query: 365 CEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K+  +L +   G  V     G     QF  AD +G  + +++G   V+   V +K   
Sbjct: 343 GMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLA 402

Query: 423 TGIREDMSLEEVINYASHR 441
            G +  ++  EV    +H 
Sbjct: 403 GGEQSTVAQAEVAQLLAHL 421


>gi|217316853|gb|ACK37832.1| putative glutamyl-prolyl tRNA synthetase [Ethusa sp. AT-2008]
          Length = 134

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  + K+  YV   S+G+   R V  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIFEDPETKEKRYVYQNSWGLT-TRTVGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  L+ +           +    AC  + A L   G     D   
Sbjct: 74  GLVLPPRVASIQAILMPVGITAKTSETEKEALYQACHHLEAELKAGGLRTKCDMRD 129


>gi|166154071|ref|YP_001654189.1| seryl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166154946|ref|YP_001653201.1| seryl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335275|ref|ZP_07223519.1| seryl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|238687414|sp|B0BAI4|SYS_CHLTB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238687427|sp|B0B8V5|SYS_CHLT2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|165930059|emb|CAP03542.1| seryl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165930934|emb|CAP06496.1| seryl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 428

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   +  +Q   G      P L   D+   SG+   +  +  R
Sbjct: 159 GSGWPAYCNEGVLLEWALLTYLLNKQQAHGFQLWLPPLLVKRDILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D  D+++   PT E V+       I + ++LP  +      FR E         G++R
Sbjct: 219 VED-GDRSLFLIPTAEVVLNGFHSQEILNEQDLPLCYAAFTPCFRREAGAGGAHERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   + ++F  TPE  +  Y KM      I   L L        +G +
Sbjct: 278 VHQFHKVEMFAF-TTPEQEEVVYQKMLHVVEEILSELQLPYQLSLLSTGDM 327


>gi|28209854|ref|NP_780798.1| seryl-tRNA synthetase [Clostridium tetani E88]
 gi|46577248|sp|Q899T6|SYS_CLOTE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|28202289|gb|AAO34735.1| seryl-tRNA synthetase [Clostridium tetani E88]
          Length = 426

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V     +   +  G  E+  P + +      +G+   + ++  RL   
Sbjct: 167 FYKGLGARLERAVINYYLDTHIDEHGYTEILPPYMVNRKSMTGTGQLPKFEEDAFRL--- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            ++     PT E  +T+++R  I +  +LP         FR E     R   G++R  +F
Sbjct: 224 EEQDYFLIPTAEVPVTNLYRDEILNGSDLPMKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +   F   PE S     K+      +   LG+    +R   G +G
Sbjct: 284 NKVELVKF-TKPEQSYEELEKLTKDAEDVLQGLGIPYRVVRICKGDLG 330


>gi|304319796|ref|YP_003853439.1| seryl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303298699|gb|ADM08298.1| seryl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 425

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 22/253 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQNR-TGA 66
             P+D       L     M  + +    G    L  G   +    +   + +      G 
Sbjct: 135 ATPQDHVDLGEGL---GQMDFETAAKISGSRFALLTGDLARLERALATFMLDLHRHEFGY 191

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           IE+S P L   D  V +G+   + +++ +    +       PT E  +T++ R  +    
Sbjct: 192 IEVSPPVLVRDDALVGTGQLPKFEEDLFKTTSGH----YLTPTAEVPLTNLVRDSLLEED 247

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP  +      FR E     R   G++R  +F   +  S   TPE     + +M  +  
Sbjct: 248 SLPRRYTAYTPCFRSEAGSAGRDTRGMIRLHQFSKVELVSI-TTPEEGHQEHERMTQAAE 306

Query: 183 RIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +  RL L    +   +G IG         E  + A     ++       DF     N  
Sbjct: 307 TVLQRLDLPYRVVTLCAGDIGFGALKTYDLEVWLPAQNTYREISSCSYVGDFQARRMNAR 366

Query: 239 FDDIISLNSIVEQ 251
           F        +   
Sbjct: 367 FRREGEKKPLYVH 379


>gi|222474830|ref|YP_002563245.1| histidyl tRNA synthetase (hisS) [Anaplasma marginale str. Florida]
 gi|254994688|ref|ZP_05276878.1| histidyl-tRNA synthetase [Anaplasma marginale str. Mississippi]
 gi|255002804|ref|ZP_05277768.1| histidyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico]
 gi|255003936|ref|ZP_05278737.1| histidyl-tRNA synthetase [Anaplasma marginale str. Virginia]
 gi|254782305|sp|B9KHM7|SYH_ANAMF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222418966|gb|ACM48989.1| histidyl tRNA synthetase (hisS) [Anaplasma marginale str. Florida]
          Length = 430

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 156/441 (35%), Gaps = 57/441 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G    LP       ++  +  +   R G + +  P  +  D+++++     D  GK
Sbjct: 7   QPVRGTRDLLPEECYKFWHIRDVAHDIGERYGFVPVETPIFEFQDVFLKTLGDSSDIIGK 66

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR    ++  P   E+   + R  I     LP   +     FR E RP+    R
Sbjct: 67  EMYSFPDRGGDVLVLRP---ELTAAVARMLICERLTLPARLFTFGPVFRYE-RPQK--CR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS---- 207
            R+F   +   F     G       M ++Y  I   L L+S  ++ E   +G   S    
Sbjct: 121 QRQFHQINYEHFGA---GCTADAELMALAY-DILGALNLRS-EVQLEINSLGNQDSVLEY 175

Query: 208 -------HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E    A + E      +      + S++     I+    ++  +    +  +
Sbjct: 176 RNSLLKYFEKHEHALS-EDSRRRLQTNPLRILDSKDRGDIAILCGAPVIADFYDDESKMT 234

Query: 261 DVHNEKLFDSLPENKR---VSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                +  D+L           RG++   G +F F T       A   G  G+   +   
Sbjct: 235 FNGVMQQLDNLGIPYTVNPRLVRGLDYYCGTVFEFKTTSLGSQDAVIAG--GRYDKLVAS 292

Query: 316 SYGIGA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
             G           +  +A++   SH  +          F ++ + +    +       +
Sbjct: 293 MGGGDVPAVGFAGGVERLASLAAYSHSTR----------FSVAFLPLG---EEAARCAMR 339

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQF--AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
               L   G  V  D + E++  +     AD  G  L +I+G + ++  +V  +H  TG+
Sbjct: 340 SAYELRGRGIRVLCDGVVEKL--KIGLKHADRSGVDLALILGDEEIAKGEVLCRHMDTGL 397

Query: 426 REDMSLEEVINYASHRFSNNR 446
           ++ +S+  + +Y S   SN +
Sbjct: 398 QQTVSISNLGDYVSGMESNAQ 418


>gi|317131290|ref|YP_004090604.1| histidyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469269|gb|ADU25873.1| histidyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 429

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 125/410 (30%), Gaps = 37/410 (9%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRND 101
           P        V    R      G  E+  PT +  +L+        D   KEM    DR  
Sbjct: 16  PDQVYKWQYVEQTARRTAATFGFEEIRFPTFEYTELFSRGVGDTTDVVQKEMYTFEDRGG 75

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           +++   P            +  +   LP   + +   FR E RP+ G  R REF    A 
Sbjct: 76  RSITLRPEGTASTVRALLQNGLAGGPLPLKLFYLISCFRGE-RPQAG--RLREFHQFGAE 132

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F      +     ++  + L+    LG+K + +   S  IG     +    A       
Sbjct: 133 LFGAAGAAADVELIELAGAALK---ALGVKDLRLELNS--IGCPTCRKDYHAA---LKAY 184

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           F +++           + + +  L+  V    A       V +    D     + V AR 
Sbjct: 185 FKARETELCDDCKNRLERNPMRLLDCKVPTCKAIAKDAPVVTDYLCDDCKAHFEDVKARL 244

Query: 282 IEVGHIFYF------GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV---------VA 326
            + G  F        G  Y       F            G Y      +           
Sbjct: 245 TDAGQTFVLNPRIVRGLDYYTRTVFEFVDEAQGLTVCGGGRYDGLVSELGGPSLPGLGFG 304

Query: 327 AVIE---SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             +E      + +G  +P   AP    L+ I A           +   L   G     D 
Sbjct: 305 MGLERLLILMESQGCAFPP--APK--GLVYIGAIGGPASQKAAALARTLRAAGIAAGTDL 360

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLE 432
            G  + +Q   AD  GF   V++G   + + +  +K  R  G R  + LE
Sbjct: 361 AGRSVKAQMKYADKQGFAYAVMLGDAELENGEAALKALRGDGAR-TVPLE 409


>gi|116073516|ref|ZP_01470778.1| seryl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116068821|gb|EAU74573.1| seryl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 425

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 8/172 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L ++     SG+   + +E  R A 
Sbjct: 166 FVTLMGQGARLERALINFMLDLHCSKGYKEVLPPVLVNSASLQGSGQLPKFAEESFRCA- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 225 --EDDLWLTPTAEVPVTSLHRDEIIPADQLPVRYVAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           F   + Y F + P+ S+ ++ ++      +   L L    +   +G IG   
Sbjct: 283 FNKVELYWF-VHPDHSEKAHAQITADAEAVLQALELPYRVLDLCTGDIGFSA 333


>gi|49531938|emb|CAG69650.1| seryl-tRNA synthetase ; also charges selenocystein tRNA with serine
           [Acinetobacter sp. ADP1]
          Length = 425

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 85/250 (34%), Gaps = 19/250 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 135 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDAERL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPEDSMQALEELTGHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              LGL    +    G +G   +     E  V +     ++    +  DF        + 
Sbjct: 312 LQALGLPYRKILLCGGDMGFGSTKTYDLEVWVPSQNTYREISSCSNMGDFQARRMMARYR 371

Query: 241 DIISLNSIVE 250
                  +V 
Sbjct: 372 TDQKKTELVH 381


>gi|226330729|ref|ZP_03806247.1| hypothetical protein PROPEN_04649 [Proteus penneri ATCC 35198]
 gi|225201524|gb|EEG83878.1| hypothetical protein PROPEN_04649 [Proteus penneri ATCC 35198]
          Length = 290

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 15/217 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   +        G  EM VP L +      +G+   + +++
Sbjct: 19  TGSRFVVMKGQIARLHRAITQFMLNLHTEEHGYQEMYVPYLVNHATLYGTGQLPKFSEDL 78

Query: 94  L---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPR 146
                L +  +      PT E  +T++ R  I    +LP         FR E     R  
Sbjct: 79  FHTKPLEEEAESQYALIPTAEVPVTNMVRDVILEEDDLPLKMTAHTPCFRSEAGSYGRDT 138

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--- 203
            G++R  +F   +       PE S  +  ++     ++   L L    +   +G IG   
Sbjct: 139 RGLIRMHQFDKVELVQI-AHPEKSMEALEELTGHAEKVLQLLNLPYRKVVLCTGDIGFGS 197

Query: 204 -GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                 E  V A     ++    +  DF        F
Sbjct: 198 RKTYDLEVWVPAQNTYREISSCSNMWDFQARRMQARF 234


>gi|285018475|ref|YP_003376186.1| seryl-tRNA synthetase (serine--tRNA ligase) (serrs) protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473693|emb|CBA16196.1| probable seryl-trna synthetase (serine--trna ligase) (serrs)
           protein [Xanthomonas albilineans]
          Length = 437

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +         E +VP + +AD    +G+   + ++M   A   ++   
Sbjct: 182 ARLHRALAQFMLDLHTGPHAYQETNVPVIVNADSLYGTGQLPKFEEDMFATA-LGEQKRY 240

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T++ R  I     LP       L FR E     R   G++R  +F   +  
Sbjct: 241 LISTSEISLTNLVRDEIVEAERLPLRMTAHSLCFRSEAGSGGRDTRGMIRQHQFEKVELV 300

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   + +M      +   LGL    M   SG +G   S     E  + +   
Sbjct: 301 SV-CRPEESAAEHERMTRCAEVVLETLGLPYRKMLLCSGDMGFSASKTYDLEVWLPSQQT 359

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 360 FREISSCSNCGDF 372


>gi|50426035|ref|XP_461614.1| DEHA2G01694p [Debaryomyces hansenii CBS767]
 gi|49657284|emb|CAG90061.1| DEHA2G01694p [Debaryomyces hansenii]
          Length = 460

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 16  RDAEIASHKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +A+++ H+++LR  G      +       Y     G      +         +     +
Sbjct: 148 AEAKLSHHEILLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLAKNDYTPL 207

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-L 128
             P + + ++  ++ +   + +E+ ++ D +D+  +   + + +         +S +  L
Sbjct: 208 QAPVMMNKEVMAKTAQLSQFDEELYKVMDGDDEKYLIATSEQPISAYHAGEWFESPQEQL 267

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     +  +G+ R   F   +       PE S   +++M       
Sbjct: 268 PVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPEKSWEEFDRMIGLSEEF 326

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           +  LGL    +   SG +    + ++ + A
Sbjct: 327 YKSLGLPYRVVGIVSGELNNAAAKKYDLEA 356


>gi|321441347|gb|ADW85088.1| glu- + pro-tRNA synthetase [Eucalantica sp. JCR-2011]
          Length = 134

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIYDDPETQEKKYVYQNSWGLT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P +VA  +  ++             +   D+C+++   L   G     D       
Sbjct: 74  GLVLPPNVASVQAIVVPCGITASSTTEERKQLMDSCKQLTQDLLAAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|253682724|ref|ZP_04863520.1| serine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561046|gb|EES90499.1| serine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 426

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +     +      G  E+  P + + +    +G+   + ++  ++   
Sbjct: 167 IYKGLGARLERAIINYFLDMHTIDHGYTEILPPYMVNRESMTGTGQLPKFEEDAFKV--- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R+ I +   LP         FR E     R   G++R  +F
Sbjct: 224 ENNGYFLIPTAEVPVTNMYRNEILNGEELPIKHAAYSACFRAEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLSHEFI 211
              +   F + PE S     K+      +   LGL    +R   G +G         E  
Sbjct: 284 NKVELVKF-VKPEQSYDELEKLTRDAEDVLKGLGLPYRVVRICKGDLGFTAALKYDIEVW 342

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           + +     ++    +F DF     N  + D          
Sbjct: 343 MPSYNRYVEISSCSNFEDFQARRANIRYKDSQKSKPEFIH 382


>gi|146282637|ref|YP_001172790.1| seryl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166223273|sp|A4VLU7|SYS_PSEU5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|145570842|gb|ABP79948.1| seryl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 426

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E   P L  A     +G+   +  ++ +++   +    
Sbjct: 170 ARLHRALAQFMIDLHTREHGYEEAYTPYLVQAPALQGTGQLPKFEDDLFKISREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +  ++  +  ++   L L    +   +G +G   +     E  V +   
Sbjct: 290 QI-VEPSKSFEALEELTGNAEKVLQLLELPYRVLSLCTGDMGFGATKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|125974866|ref|YP_001038776.1| seryl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256003878|ref|ZP_05428865.1| seryl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281418668|ref|ZP_06249687.1| seryl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166219869|sp|A3DI04|SYS_CLOTH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|125715091|gb|ABN53583.1| seryl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|255992216|gb|EEU02311.1| seryl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281407752|gb|EFB38011.1| seryl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316939077|gb|ADU73111.1| seryl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 423

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 72/178 (40%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +   ++ G +E+  P L   +  + +G+   + ++  +++D 
Sbjct: 164 FYKGLGARLERALMNFMLDLHVDKHGYVEVFPPFLVHRNSMIGTGQLPKFEEDAFKVSDT 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T+++R  I   ++LP         FR E     R   G++R  +F
Sbjct: 224 D---YFLIPTAEVPVTNMYREQILDVKDLPIKHVAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F  TPE S     K+      +   L +    ++   G +G   + ++ + 
Sbjct: 281 NKVELVKF-TTPETSYEELEKLTRDAEEVLQMLEIPYRVVKICVGDLGFTAAMKYDIE 337


>gi|260768113|ref|ZP_05877047.1| seryl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260616143|gb|EEX41328.1| seryl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 435

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +    + G  E+ VP L ++D    +G+   +GK++
Sbjct: 160 TGARFVIMKGQFARLHRAIAQFMLDLHTEQHGYTELYVPYLVNSDTLFGTGQLPKFGKDL 219

Query: 94  LRLA-------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
                      D   + +   PT E  +T++ R  I    +LP         FR E    
Sbjct: 220 FHTEPLAEKASDEEPRRLSLIPTAEVPVTNLVRDTITEEADLPLKMTAHTPCFRSEAGSY 279

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +       PE S  +  ++     ++   L L    +   +G +
Sbjct: 280 GRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEELTGHAEKVLQLLELPYRKVVLCTGDM 338

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G         E  V A     ++    +  DF        F
Sbjct: 339 GFGACKTYDLEVWVPAQKTYREISSCSNMWDFQARRMQARF 379


>gi|126179531|ref|YP_001047496.1| histidyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|166228583|sp|A3CVW4|SYH_METMJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125862325|gb|ABN57514.1| histidyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 410

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 134/431 (31%), Gaps = 49/431 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKE 92
           Q  +G   +LP   +    +   +R+   R G  E+  P  +  +L+ ++SG  +   +E
Sbjct: 3   QKPRGTRDFLPDEMERRRLIERRMRDAARRWGYREVCTPDFEHLELFTMKSG--EGIIQE 60

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    D+  + M   P     +  ++ +  K     P  +      FR E RP+ G  R 
Sbjct: 61  MYVFEDKGGRKMTLRPEVTAAVLRMYVNEGKV-LPKPLRWCYFADCFRYE-RPQKG--RY 116

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLR----IFH-RLGLKSIPMRAESGPIGGDLS 207
           R+F              +      +    LR     F   +G  +      SG   GD  
Sbjct: 117 RQFWQFGVELIGADTASADAEVIMLADDTLRSTGVTFDLHVGHLAPMKHLLSGLDPGDQR 176

Query: 208 HEFIVL---ADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                L      G   V   K+      P +   +   +  +  +               
Sbjct: 177 AIMAYLDKHDQKGLEAVLFGKNLTHLAEPLAALGECRTVSEVFEVAGDVPERARIEETFT 236

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-GADGKDHYVQM------GS 316
             +  +         ARG++      F   ++  + A  +    G      +       S
Sbjct: 237 LLESQEIDYRPDFGIARGLDYYTGMVF-EGFAKNLGAENQILGGGTYRLAHLFGGDDVAS 295

Query: 317 YGIGA--MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            G      RV+ ++      G        +A   +  +         R    ++     +
Sbjct: 296 CGFAIGFDRVMVSI------GDF-----ELAHEPVVGVVCTPEG---RARALEVARAFRE 341

Query: 375 VGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            G     D M   +G+Q       AD        ++G + V    V +K+  +G +++ S
Sbjct: 342 AGVRAEADLMQRGMGAQVSHAAKTAD-----FAAVLGKREVEAGTVTLKNLHSGEQQERS 396

Query: 431 LEEVINYASHR 441
           LEE I   +  
Sbjct: 397 LEEAIAEVARH 407


>gi|161485645|ref|NP_560930.2| seryl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|168206221|ref|ZP_02632226.1| seryl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168210470|ref|ZP_02636095.1| seryl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|168214044|ref|ZP_02639669.1| seryl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168217726|ref|ZP_02643351.1| seryl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|169343428|ref|ZP_02864431.1| seryl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|182625424|ref|ZP_02953197.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|30173188|sp|Q8XPE9|SYS_CLOPE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169298514|gb|EDS80600.1| seryl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|170662379|gb|EDT15062.1| seryl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170711415|gb|EDT23597.1| seryl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170714531|gb|EDT26713.1| seryl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177909421|gb|EDT71873.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182380223|gb|EDT77702.1| seryl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 425

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +   ++     ++     G  E+  P + + D    +G+   + ++  ++    +  
Sbjct: 171 MGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPKFEEDAFKV---ENNG 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R+       LP         FR E     R   G++R  +F   +
Sbjct: 228 YFLIPTAEVPVTNMYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              F   PE S    +K+      +   LGL    +R   G +G
Sbjct: 288 LVKF-CKPEQSYEELDKLVQDAESVLQGLGLPYRIVRICKGDLG 330


>gi|83588895|ref|YP_428904.1| seryl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|123525300|sp|Q2RMH8|SYS_MOOTA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|83571809|gb|ABC18361.1| seryl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 427

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 13/201 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    +   + +    + G  E+  P + ++   + +G+   + ++M  + 
Sbjct: 162 FVFYRGAGARLERALINFMLDLHTIKHGYTEIFPPYMVNSASMLGTGQLPKFAEDMFHV- 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+++R  I     LP         FR E     R   G++R  
Sbjct: 221 --EGTDYYLIPTAEVPVTNLYRGEILPGEKLPIYHVAYSACFRAEAGAAGRDTRGLIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F   PE S     K+      +   LGL    +   +G +G   +     E
Sbjct: 279 QFNKVELVKF-TRPEDSYEELEKLTRDAEEVLQLLGLPYRVVALCAGDLGFSAAKTYDLE 337

Query: 210 FIVLADTGETQVFCSKDFMDF 230
             +       ++    +F DF
Sbjct: 338 VWMPGTACYREISSCSNFEDF 358


>gi|331017250|gb|EGH97306.1| seryl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|302551280|ref|ZP_07303622.1| glycyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302468898|gb|EFL31991.1| glycyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 460

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 148/444 (33%), Gaps = 60/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++      L 
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGIDSSVILAPEVWVASGHVATFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSY--RNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
           +       +   H E   +  + H       +L       +  F  E +   G++ +   
Sbjct: 90  ECTSCHKRFRADHLEEAYEEKKGHAPENGLADLNCPNCGNKGTF-TEPKQFSGLLSTHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                     L PE ++     +F ++ ++                 +G    +E     
Sbjct: 149 PTQDSGSIAYLRPETAQ----GIFTNFSQVQTT---SRRKPPFGIAQMGKSFRNEITPGN 201

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T+ F   +   F  P E+  + +       +EQ    Y           +   P+ 
Sbjct: 202 FIFRTREFEQMEMEFFVKPGEDEKWQEYW-----MEQRWNWYTGLGLREENMRWYEHPKE 256

Query: 275 K--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHY 311
           K    S R  ++ + F FG             T Y L   +   G D        G+   
Sbjct: 257 KLSHYSKRTADIEYRFQFGGSEWGELEGVANRTDYDLGAHSKASGQDLSYFDQEAGERWT 316

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHD 358
             +     G  R + A +  ++                 +     +AP K++++ +  + 
Sbjct: 317 PYVIEPAAGVGRSLLAFLLDAYVEDEAPNAKGKMEKRTVLRLDHRLAPVKVAVLPLSRNP 376

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      + +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V +
Sbjct: 377 E-LSPKAKGLAQALRQ-NWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTV 433

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +E +SL+++  Y + R 
Sbjct: 434 RERDTMKQERISLDQIEGYLAARL 457


>gi|327480895|gb|AEA84205.1| seryl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E   P L  A     +G+   +  ++ +++   +    
Sbjct: 170 ARLHRALAQFMIDLHTREHGYEEAYTPYLVQAPALQGTGQLPKFEDDLFKISREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +  ++  +  ++   L L    +   +G +G   +     E  V +   
Sbjct: 290 QI-VEPSKSFEALEELTGNAEKVLQLLELPYRVLSLCTGDMGFGATKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|307243436|ref|ZP_07525592.1| serine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306493160|gb|EFM65157.1| serine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 9/171 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG K   ++     ++     G  E+  P + + + ++ +G+   + ++M +L       
Sbjct: 172 LGSKLERSLIGFFLDQHTENNGYTEVIPPFIANRNSFIGTGQLPKFEEDMFKL---EGLE 228

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++ + I S   LP         FR E     R   G++R  +F   +
Sbjct: 229 YFLVPTAEVPVTNLYNNEILSLDKLPIKHCAYTPCFRSEAGSAGRDTRGLVRQHQFNKVE 288

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              F + PE S      +     ++   LGL    ++  +G +G   + ++
Sbjct: 289 LVKF-VKPEDSYQELETLTNDAEKMLQLLGLPYRVVKICTGDLGFTAAKKY 338


>gi|319740159|gb|ADV60373.1| glu- + pro-tRNA synthetase [Bombyx mori]
          Length = 134

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++     + G  +S      +  A+  + +YV   S+GI   R +  ++    D K
Sbjct: 15  SGRGVQGATSHHLGQNFSKMFEIVYDDAETLEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             Q   D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRVAEIQAVVVPCGITASSSADERQALMDSCKALVDDLLAAGVRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|310778224|ref|YP_003966557.1| histidyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309747547|gb|ADO82209.1| histidyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 413

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 128/421 (30%), Gaps = 58/421 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            +++    +E     G   + +P  +  +L+        D   KEM    DR D+++   
Sbjct: 21  YNHIVNTAKEVFEAYGYSMIKIPIFEETNLFKRGIGEGTDVVEKEMYTFTDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H    +     +Y     FR E RP+ G  R REF      +     
Sbjct: 81  PEGTASVVRSYLEHKIYGKEEFTRYYYTGSMFRYE-RPQAG--RQREFNQLGIEALGEGS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----------VLADTG 217
                    M  + L    +LG+  + +   S  +GG+ S                 +  
Sbjct: 138 PILDAEVIAMSYTLL---EKLGITDLEVNINS--VGGNESRSKYRDTLINFLTPSKDELC 192

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E      +      +  +N    +I      +               +K  D      R 
Sbjct: 193 EDCRARYERNPLRVLDCKNPKCKEITEEAPSIIDSLNQEEREHYESVKKYLDIFGIKYRE 252

Query: 278 SARGIEVGHIFYFGTKYSLPMSA-----TFKGA----------DGKDHYVQMGSYGIGAM 322
           ++R +  G  +Y  T Y +  +      T  G             K+      + GI   
Sbjct: 253 NSRLV-RGLDYYSSTVYEVITNKLGSQGTVLGGGRYDNLLKQLGNKEIPAVGFAAGI--- 308

Query: 323 RVVAAVIESSHDGK---GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
             +  ++E          I W                 D+        I   L   G   
Sbjct: 309 ERLMMLLEDYPKNNPEVFIAWL--------------GKDEAT--YAFGIAKALRDAGIKT 352

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +     + +    AD LG    +I+G + +++ K+ +K+     +E +S+E+VI    
Sbjct: 353 CIEFSSRSLKASMKKADKLGVGHAIIIGDEEMANKKMVLKNFQERTQETLSIEDVIKRLK 412

Query: 440 H 440
            
Sbjct: 413 K 413


>gi|259046695|ref|ZP_05737096.1| histidine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036591|gb|EEW37846.1| histidine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 438

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 142/434 (32%), Gaps = 46/434 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  KG    LP   K    +    R         EM  P  +S DL+        D 
Sbjct: 1   MIQK-PKGTADLLPEELKIWHYIEETARIILGDYQFEEMRTPMFESYDLFSRGVGDTSDI 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +         P+  Y +   FR E RP+
Sbjct: 60  VSKEMYDFYDKGDRHITLRPEGTAAIVRAYVENKLFGPEHKKPYKVYYMAPMFRYE-RPQ 118

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R R+F       F+ T   +      M      +   LGL ++ +   S       
Sbjct: 119 SG--RLRQFHQLGVEVFESTNPATDVETIAM---AWDLLKELGLSNMRLVINSLGKTADR 173

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P   +LS +          +V  SKD  D  I        + +S  + 
Sbjct: 174 IKYREALISYLEPFADELSEDSKNRLHKNPLRVLDSKDKRDIEIVKNAPRILEFLSDEAR 233

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFY-FGTKYSLPMSATFKG-- 304
                      +     ++ +++          I E+      FG K ++     + G  
Sbjct: 234 THFEKVQQYLNALEIPFEIDETMVRGLDYYQDTIFEIMTDSKSFGAKTTICGGGRYDGLV 293

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              DG +       +G+G  R+V  + +   +         +    + ++ +    +   
Sbjct: 294 QELDGPETPGF--GFGLGIERLVLLMKDEQVEV------PELQELDVYIVGLG---EATE 342

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   K+   L + G  V  D  G +   QF  A   G  + + +G + +   +V +K   
Sbjct: 343 EEVLKLSISLRQQGYSVDRDFFGRKAKPQFKNAQKYGAKVVITLGEEELETKQVPVKVMK 402

Query: 423 TGIREDMSLEEVIN 436
           TG    ++L+E+  
Sbjct: 403 TGKEVKINLQELYE 416


>gi|197285699|ref|YP_002151571.1| histidyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227356210|ref|ZP_03840599.1| histidyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|229558705|sp|B4EZT2|SYH_PROMH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194683186|emb|CAR43824.1| histidyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227163674|gb|EEI48590.1| histidyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 427

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 141/438 (32%), Gaps = 52/438 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP   +    +   +++     G  E+  P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTRVWQKIENTLKQILAGYGFSEIRTPIVEHTPLFQRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           EM    DR + A      P +          H   Y       + +   FR E RP+ G 
Sbjct: 66  EMYTFTDRGEDAQSLTLRPENTAGCVRAGIEHGLLYNQE-QRLWYLGPMFRYE-RPQKG- 122

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F    A  F L           + +   R +  LG+    +  E   IG   +  
Sbjct: 123 -RYRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWKALGIAE-HVTLELNSIGSLEARA 177

Query: 210 FIVLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A             E             + S+N +   +++    +  +    +  
Sbjct: 178 KYREALVAFLEQHVDQLDEDCKRRMYSNPLRVLDSKNPEIQTLLNDAPELFDYLDDESRE 237

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADG 307
                  L D++       +   RG++     +F       G++ ++     + G     
Sbjct: 238 HFDGLCALLDAVGITYRVNQRLVRGLDYYNRTVFEWVTSALGSQGTVCAGGRYDGLVKQL 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQVCRD 363
             H      + +G  R++  V   +        P+ VA   ++ + +             
Sbjct: 298 GGHPTPAVGFAMGMERMILLVQAVN--------PEFVADTHVADVYLASFGDNSQSAALM 349

Query: 364 ACEKIYARLSKVGCDVFWDDMG--EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+I  +L  +            +Q+G     AD  G  + +I+G   ++   V +K  
Sbjct: 350 LAEEIRDQLPTLRLMTNHGKGNFKKQLGR----ADKHGAKIALILGEDEINAGTVAVKDL 405

Query: 422 LTGIREDMSLEEVINYAS 439
            +G +  +S  E+    +
Sbjct: 406 RSGEQTIVSRSELAQQLT 423


>gi|321441291|gb|ADW85060.1| glu- + pro-tRNA synthetase [Atteva punctella]
          Length = 134

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+GI   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIYDDPETQEKKYVYQNSWGIT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             +   D+C+++   L+K G     D       
Sbjct: 74  GLVLPPRVASVQAIVVPCGITASSTAEERKSLLDSCKELVGELAKAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|224372146|ref|YP_002606518.1| seryl-tRNA synthetase [Nautilia profundicola AmH]
 gi|254783040|sp|B9L7B0|SYS_NAUPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|223589986|gb|ACM93722.1| seryl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 416

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 75/207 (36%), Gaps = 12/207 (5%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +     +     G  E+ VP + + +    +G+   + +++ ++    ++ +   PT 
Sbjct: 177 RALINFFLDHNREWGFEEVYVPFMVNRETMTGTGQLPKFEEDLFKI---ENEELYLIPTA 233

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T++FR  I +  + P         FR E     +   G++R  +F   +  +    
Sbjct: 234 EVPLTNLFRDEIITNLDEPIKLTAYTPCFRKEAGSYGKDTKGIIRQHQFDKVELVAI-TK 292

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVF 222
           PE S   +++M         +LGL    +   +G +G   +     E  + +     ++ 
Sbjct: 293 PEDSDKMFDEMVACASNALEKLGLPYRQLMLCTGDLGFSAAKTIDLEVWIPSQNKYREIS 352

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIV 249
              +  DF        + D      + 
Sbjct: 353 SVSNTRDFQARRAKIRYKDGKKNKLVH 379


>gi|229545446|ref|ZP_04434171.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256619445|ref|ZP_05476291.1| histidyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256853486|ref|ZP_05558856.1| histidyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|307275910|ref|ZP_07557043.1| histidyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307295913|ref|ZP_07575745.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|229309362|gb|EEN75349.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256598972|gb|EEU18148.1| histidyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256711945|gb|EEU26983.1| histidyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|306496244|gb|EFM65823.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|306507240|gb|EFM76377.1| histidyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|315028897|gb|EFT40829.1| histidyl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 433

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 139/435 (31%), Gaps = 51/435 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I R+ +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHVTLRP---EGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R R+F      +F             M    L  F +LG++ I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGVEAFGSENPALDVEIMAM---ALDFFKQLGIQQIKLVINSLGDK 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +E     D +  
Sbjct: 172 ETRATYRQALIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYL-N 230

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVG-HIFYFGTKYSLPMSATF 302
                 + A       +      DS         +    E+       G + ++     +
Sbjct: 231 EPSKAHFEAVTDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRY 290

Query: 303 KG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G     G       G +G+G  RV   ++    +   I    +++     ++ I +   
Sbjct: 291 NGLVEELGGPDTPGFG-FGMGIERV---LLTMEAEEVVI---PALSELDAYVVGIGSETN 343

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +      ++   +   G     D M  +  +QF  AD L   L + +G   +++  V +K
Sbjct: 344 IT---ALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVK 400

Query: 420 HRLTGIREDMSLEEV 434
              T   +   L  +
Sbjct: 401 SMATREEKAFPLSAI 415


>gi|254468986|ref|ZP_05082392.1| histidyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087796|gb|EDZ65079.1| histidyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 421

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 149/431 (34%), Gaps = 45/431 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG Y  LP  QK          +  +R    E+ +P +++ DL++ S   + D   KEM 
Sbjct: 8   KGFYDVLPEKQKYWRFFYETAYQVLDRFAYDEIKLPIVENTDLYIHSVGEQTDIVEKEMY 67

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N+  +   P            +  +Y N P   +     FR E        R R
Sbjct: 68  SWQDNLNNDKLTLRPEGTAGCVRAVIENNLTY-NGPIRLFYQGPMFRHE---NVQKGRQR 123

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGDLS 207
           +F      +F  +          +  S   ++  LGLK+I ++       E   +     
Sbjct: 124 QFNQLGIEAFGFSEPLLDAEVICLLDS---LWKNLGLKNIELQINNIGDPEERAVYRQEL 180

Query: 208 HEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            ++      +  E             + S+N     +I          +  +A       
Sbjct: 181 IKYFESHQDELDEDAKRRLYTNPMRILDSKNPKMQGLIDKAPKFLDQNSAESAKHFEQVT 240

Query: 266 KLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLP----MSATFKGADGKDHY 311
           +  D         +   RG++     +F       G++ ++          +  +GK+  
Sbjct: 241 QYLDQSNIAYKINKNLVRGLDYYNRTVFEFVTSDLGSQGTIAGGGRFDYLIQSINGKEIP 300

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 GIG  R++  ++E  ++    I P      ++ ++++    +   +    I  +
Sbjct: 301 AF--GVGIGIERIIL-LLEELNNSSFDIKP------QVYVLSLG---ENVDNYAFNISNQ 348

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMS 430
           L      V  +       SQ   AD  G    +I+G   V++  V+IK  R    +E+++
Sbjct: 349 LRNSNISVCMNVGKNSFKSQMKKADKSGAQFAIIIGDNEVNNDSVQIKLLRQELSQEEIN 408

Query: 431 LEEVINYASHR 441
            ++++++ +  
Sbjct: 409 KKDIVHFITQH 419


>gi|198276597|ref|ZP_03209128.1| hypothetical protein BACPLE_02793 [Bacteroides plebeius DSM 17135]
 gi|198270122|gb|EDY94392.1| hypothetical protein BACPLE_02793 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 115/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E   
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGARLQRALINFFLDEARA 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PT+ +A     +G+      +M      N   +   PT E  +T+I+R  I 
Sbjct: 192 AGYEEIMPPTVVNAASGYGTGQLPDKEGQMY---HCNLDDLYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLKKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++      T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRTAEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|110801909|ref|YP_697363.1| seryl-tRNA synthetase [Clostridium perfringens SM101]
 gi|122956934|sp|Q0SWW9|SYS_CLOPS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|110682410|gb|ABG85780.1| serine--tRNA ligase [Clostridium perfringens SM101]
          Length = 425

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +   ++     ++     G  E+  P + + D    +G+   + ++  ++    +  
Sbjct: 171 MGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPKFEEDAFKV---ENNG 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R+       LP         FR E     R   G++R  +F   +
Sbjct: 228 YFLIPTAEVPVTNMYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              F   PE S    +K+      +   LGL    +R   G +G
Sbjct: 288 LVKF-CKPEQSYEELDKLVQDAESVLQGLGLPYRIVRICKGDLG 330


>gi|66046404|ref|YP_236245.1| seryl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|289679158|ref|ZP_06500048.1| seryl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
 gi|81308101|sp|Q4ZRL5|SYS_PSEU2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|63257111|gb|AAY38207.1| Seryl-tRNA synthetase, class IIa [Pseudomonas syringae pv. syringae
           B728a]
 gi|330900602|gb|EGH32021.1| seryl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330940282|gb|EGH43412.1| seryl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330981394|gb|EGH79497.1| seryl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|28870509|ref|NP_793128.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38258311|sp|Q87ZS9|SYS_PSESM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|28853757|gb|AAO56823.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|257452138|ref|ZP_05617437.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317058683|ref|ZP_07923168.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313684359|gb|EFS21194.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 413

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 131/407 (32%), Gaps = 42/407 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYG 107
            + ++ I ++     G   +  P  +  DL+    G   D   KEM    DR D+++   
Sbjct: 21  YNYISEIAKQVFESYGCQFIKTPIFEETDLFKRGIGEATDVVEKEMYTFKDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +    +     FY     FR E RP+ G  R REF            
Sbjct: 81  PENTASVVRSYLENAIYAKEDVSRFYYNGSMFRYE-RPQAG--RQREFNQIGVEVLGEKS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE------SGPIGGDLSHEFIVLA--DTGET 219
                    M     ++  +LG+  + +R        S         E+      D  E 
Sbjct: 138 PILDAEIIAMG---YKLLQKLGITDLEVRINCIGSNASRTEYRKKLLEYFTPMKEDLCED 194

Query: 220 QVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                +      +  + + D  D                  +      +F          
Sbjct: 195 CKNRLERNPLRVLDCKVDHDKMDGAPSIIDSLFEEERAHYEAVKKYLTIFGVPFVEDSGL 254

Query: 279 ARGIEVG--HIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIE 330
            RG++     +F       G++ ++     +     +     + ++G  + +  +  ++E
Sbjct: 255 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKQLGDKDIAAFGFASGVERIMMLLE 314

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                          P K + + I    +   +   +I A L +    V  D   +  G 
Sbjct: 315 DY-------------PKKATDVYIAWLGENTLEKAMEITALLRENNLKVAVDYNSK--GM 359

Query: 391 Q--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +     AD L     VI+G   ++ + V +K+  T  +E++S+E ++
Sbjct: 360 KSHMKKADKLNTKYCVILGEDELAKNVVVLKNFETREQEEVSVENIL 406


>gi|18143671|dbj|BAB79720.1| serine-tRNA ligase [Clostridium perfringens str. 13]
          Length = 427

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +   ++     ++     G  E+  P + + D    +G+   + ++  ++    +  
Sbjct: 173 MGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPKFEEDAFKV---ENNG 229

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R+       LP         FR E     R   G++R  +F   +
Sbjct: 230 YFLIPTAEVPVTNMYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVE 289

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              F   PE S    +K+      +   LGL    +R   G +G
Sbjct: 290 LVKF-CKPEQSYEELDKLVQDAESVLQGLGLPYRIVRICKGDLG 332


>gi|28377392|ref|NP_784284.1| seryl-tRNA synthetase [Lactobacillus plantarum WCFS1]
 gi|38258545|sp|Q88Z60|SYS1_LACPL RecName: Full=Seryl-tRNA synthetase 1; AltName: Full=Serine--tRNA
           ligase 1; Short=SerRS 1; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 1
 gi|28270224|emb|CAD63125.1| serine--tRNA ligase [Lactobacillus plantarum WCFS1]
          Length = 423

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G      V + + +    + G  E+  P L +A     +G++  + +++  + 
Sbjct: 163 FVYYKDAGALLERAVYSFMLDLHTQKQGYHEIIPPYLVNAQTMYGTGQFPKFKEDVYTVE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 M   PT E  +T+ + + I S   LP  F  +   +R E     R   G++R  
Sbjct: 223 SSG---MTLIPTAEVPLTNYYANEILSEDQLPTYFTAMTPCYRSEAGSAGRDTRGLIRMH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   +   PE S     K+  +   +   LGL    ++  +G  G   +  + V 
Sbjct: 280 QFHKVEMVKY-CKPENSYDELEKLTDNAEEVLRELGLAYHVIKLSTGDTGFSSAKTYDVE 338


>gi|307545960|ref|YP_003898439.1| seryl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307217984|emb|CBV43254.1| seryl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 442

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + ++Q    G  E  VP + + D    +G+   +G+++ RL D  ++   
Sbjct: 186 ARLHRALTQFMLDKQTLEHGYEECYVPYMVNDDSLYGTGQLPKFGEDLFRLED--ERGYR 243

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  I  ++ LP         FR E     R   G++R  +F   +  
Sbjct: 244 LIPTAEVPLTNFARDEIIEHKALPVRLTAHTPCFRSEAGSHGRDTRGMIRQHQFDKVEMV 303

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +  +M      I   L L    +   +G +G   +     E  + +   
Sbjct: 304 QL-VEPSTSYDTLEEMRGHAEAILQALDLPYRVVTLCTGDMGAGAAKTYDLEVWLPSQET 362

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        F  
Sbjct: 363 YREISSVSNCEDFQARRMQARFRH 386


>gi|218258680|ref|ZP_03475001.1| hypothetical protein PRABACTJOHN_00656 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225305|gb|EEC97955.1| hypothetical protein PRABACTJOHN_00656 [Parabacteroides johnsonii
           DSM 18315]
          Length = 514

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 112/363 (30%), Gaps = 70/363 (19%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF                                                     E  
Sbjct: 261 MREFEQM--------------------------------------------------EMQ 270

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                GE      +        +    +   + L +   ++          +     +  
Sbjct: 271 FFVRPGE------EMEWFKQWKATRLKWHQAMGLGNEKYRYHDHEKLAHYANAATDIEFE 324

Query: 272 PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    GI     F      K+S      F     + +   +    IG  RV  +V+
Sbjct: 325 MPFGFKEVEGIHSRTNFDLSQHEKFSGKKVQYFDPELNQSYTPYVIETSIGVDRVFLSVM 384

Query: 330 ESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             S+  + +           P ++AP K++++ +   D    +  E+I   L +      
Sbjct: 385 AGSYCEETLESGETRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIMKML-RFDFRCQ 442

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+  + IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  S 
Sbjct: 443 YDE-KDSIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVSIDKLHDIISE 501

Query: 441 RFS 443
           + S
Sbjct: 502 KVS 504


>gi|15597808|ref|NP_251302.1| seryl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|107102134|ref|ZP_01366052.1| hypothetical protein PaerPA_01003183 [Pseudomonas aeruginosa PACS2]
 gi|116050599|ref|YP_790582.1| seryl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891227|ref|YP_002440093.1| seryl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|254235598|ref|ZP_04928921.1| seryl-tRNA synthetase [Pseudomonas aeruginosa C3719]
 gi|254241045|ref|ZP_04934367.1| seryl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|296388929|ref|ZP_06878404.1| seryl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
 gi|30173211|sp|Q9I0M6|SYS_PSEAE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122259722|sp|Q02NA4|SYS_PSEAB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701396|sp|B7UW10|SYS_PSEA8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|9948677|gb|AAG06000.1|AE004689_12 seryl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|115585820|gb|ABJ11835.1| seryl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167529|gb|EAZ53040.1| seryl-tRNA synthetase [Pseudomonas aeruginosa C3719]
 gi|126194423|gb|EAZ58486.1| seryl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|218771452|emb|CAW27219.1| seryl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS----KGIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D E+  H  L  R G +   +     G    L  G   +    +   +        G  E
Sbjct: 133 DFEVKDHVALGERHGWLDFETAAKLSGARFALMRGPIARLHRALAQFMINLHTAEHGYEE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P L  A     +G+   + +++ ++    +  +   PT E  +T+I    I   + L
Sbjct: 193 AYTPYLVQAPALQGTGQLPKFEEDLFKIGRDGEADLYLIPTAEVSLTNIVSGQILDAKQL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     R   G++R  +F   +     + P  S  +   +  +  R+
Sbjct: 253 PLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMVQI-VDPATSYEALEGLTANAERV 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
              L L    +   +G +G   +     E  V +     ++    +  DF
Sbjct: 312 LQLLELPYRVLALCTGDMGFGATKTYDLEVWVPSQDKYREISSCSNCGDF 361


>gi|229827512|ref|ZP_04453581.1| hypothetical protein GCWU000182_02901 [Abiotrophia defectiva ATCC
           49176]
 gi|229788450|gb|EEP24564.1| hypothetical protein GCWU000182_02901 [Abiotrophia defectiva ATCC
           49176]
          Length = 462

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 120/365 (32%), Gaps = 71/365 (19%)

Query: 93  MLRL----ADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +      + +   +   P   + +   F++    S + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGITEDSKAVVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF                               ++ L+           G D+ 
Sbjct: 214 FTFRTREF------------------------------EQMELEFFCE------PGTDME 237

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                     +  +       +  +   + +     S  +   ++  P+           
Sbjct: 238 WFHYWRQFCKDWLISLGMKEEEMRLRDHDPEELSFYSKGTTDIEFLFPFGWGELWGIADR 297

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D      +  +                 PM   F     + +   +    +GA RV  A
Sbjct: 298 TDYDLGRHQEIS---------------GEPMEY-FDDEKKEKYIPYVVEPSLGADRVTLA 341

Query: 328 VIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            +  ++D + +          +   +AP K++++ +        +  EK++A LSK   +
Sbjct: 342 FLCGAYDEEELEGGDVRTVLRFHPFLAPVKVAVLPLSKK---LGEGAEKVFAELSK-DWN 397

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  +       +D  V ++ R +  +E +++ E+ NY 
Sbjct: 398 CEYDDRGA-IGKRYRRQDEIGTPFCITYDFDSETDGMVTVRDRDSMEQERVAISELRNYF 456

Query: 439 SHRFS 443
             +F 
Sbjct: 457 REKFE 461


>gi|163801972|ref|ZP_02195868.1| seryl-tRNA synthetase [Vibrio sp. AND4]
 gi|159174113|gb|EDP58921.1| seryl-tRNA synthetase [Vibrio sp. AND4]
          Length = 435

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGGGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +GK++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLAEKVNDEEPRKLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 255 ISDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|145588877|ref|YP_001155474.1| seryl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083578|sp|A4SWP6|SYS_POLSQ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|145047283|gb|ABP33910.1| seryl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 436

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 26/248 (10%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQ-NRTGAIEM 69
           D EI  H  L    G+  + +    G    +  G   +    +   + +      G  E+
Sbjct: 133 DFEIKDHVDLGGPLGLDFEVAAKISGSRFVVLKGPIARLHRALAQFMIDTHATHHGYQEV 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL------ADRNDKA----MIYGPTHEEVMTDIFR 119
             P + +A     +G+   + +++ ++       D   +A        PT E  +T++ R
Sbjct: 193 YAPYMVNAASMRGTGQLPKFEEDLFKVPRQMGGEDEGGEAKTENFYLIPTAEVPVTNLVR 252

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I +   LP  F      FR E     R   G++R  +F   +       PE S  +  
Sbjct: 253 DEIVNADTLPLKFVAHTPCFRSEAGSYGRDVRGMIRQHQFDKVELVQI-TKPEHSMQALE 311

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFP 231
           ++     RI   L L    +   +G +G   +     E  V +     ++       DF 
Sbjct: 312 ELTGHAERILELLELPYRKVLLCTGDMGFGSTKTYDLEVWVPSQNAYREISSCSSMGDFQ 371

Query: 232 IPSENTDF 239
                  F
Sbjct: 372 ARRMQARF 379


>gi|293394876|ref|ZP_06639166.1| histidine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291422627|gb|EFE95866.1| histidine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 424

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 137/444 (30%), Gaps = 67/444 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPEDTALWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG   +    
Sbjct: 122 YRQFHQLGAEVFGLQGPDVDAE---LILLTARWWKALGIAE-HVKLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI------------VEQWTAPYAAT 259
             A     +        D      +     + S N                      A  
Sbjct: 178 RDALVAFLEQHVELLDDDCKRRMYSNPLRVLDSKNPQVQALLNDAPRLSEYLDADSKAHF 237

Query: 260 SDVHNEKLFDSLPE-NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
             +        +P        RG++     +F       G + ++     + G      G
Sbjct: 238 DGLCELLTLAGIPYTINERLVRGLDYYNRTVFEWVTSSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---------- 357
           +        + +G  R+V  V   + D K        AP  I +  I +           
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVNPDFK--------APATIDIYVISSGAGTQSAAMRL 347

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSK 415
            +  RDA  ++    +  G              +     AD  G  + +I+G   V+  +
Sbjct: 348 AEAVRDAAPQLKLMTNYGGG-----------NFKKQITRADKWGARVALILGENEVAAQQ 396

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           V +K   +G +E ++  E+    +
Sbjct: 397 VVVKDLRSGEQETLAQSELAARLA 420


>gi|187778364|ref|ZP_02994837.1| hypothetical protein CLOSPO_01956 [Clostridium sporogenes ATCC
           15579]
 gi|187771989|gb|EDU35791.1| hypothetical protein CLOSPO_01956 [Clostridium sporogenes ATCC
           15579]
          Length = 415

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 124/425 (29%), Gaps = 35/425 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    LP        +    R      G  E+  P  +  +L+        D   K
Sbjct: 4   QAPKGTKDLLPTESYKWQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F          P   Y      R E        R
Sbjct: 64  EMYTFEDKAGRSITLKPEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+        F             +    +RI+  LG+    +      IG     +  
Sbjct: 121 LRQHHQFGIEIFGAKDASVDAE---VISIPVRIYKELGVN--GVELNINSIGCPKCRKTY 175

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     + + SK++       +     + + +              + +  + + D  
Sbjct: 176 NEA----LKKYLSKNYDKLCSTCKTRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDEC 231

Query: 272 PENKRVSARGIEVGHIFYF-------GTKYSLPMSATFKGAD-----GKDHYVQMGSYGI 319
            E+       ++V +I Y        G  Y       F   D     G  +   +   G 
Sbjct: 232 KEHFESLKSYLDVLNINYKVDPFIVRGLDYYSKTVFEFITDDITICAGGRYDYLIEEIGG 291

Query: 320 GAMRVVAAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +M  V   +           K I  P+      + L      D+   +   K+   L  
Sbjct: 292 PSMPAVGFGMGMERLLLTLQEKAIEIPEE---AYVDLYLGNMGDKAKLEV-LKLAKELRD 347

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                  D MG+ + +Q   A+ +G    +++G + ++  K  +K    G + +++++++
Sbjct: 348 RHIKCEIDHMGKSVKAQMKYANRIGAKYSMVLGEEELNTGKATVKRMEDGEQIEVNIKDI 407

Query: 435 INYAS 439
                
Sbjct: 408 DTLIK 412


>gi|328958438|ref|YP_004375824.1| serine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328674762|gb|AEB30808.1| serine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 423

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 13/221 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + +    + G  E+  P L        +G++  + +++  + 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDLHTRKHGYTEVIPPYLVKESAMFGTGQFPKFKEDVFSIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           + N   ++  PT E  +T+ + + I  Y  LP  F  +   FR E     R   G++R  
Sbjct: 223 NEN---LVLIPTAEVPLTNYYANEIIEYEKLPIYFTALSPSFRSEAGSAGRDTRGLIRMH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F    E S     KM      +   L +    +   +G +G   +     E
Sbjct: 280 QFHKVEMVKF-TDKESSFDELEKMTHDAEEVLQLLEIPYKTIVLSTGDMGFSATKTYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +     ++    + +DF        + D       V 
Sbjct: 339 VWFPSQDTYREISSCSNCLDFQARRAKIRYRDSKGKIEFVH 379


>gi|213970055|ref|ZP_03398187.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301381411|ref|ZP_07229829.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302058409|ref|ZP_07249950.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
 gi|302130342|ref|ZP_07256332.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925159|gb|EEB58722.1| seryl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|218548049|ref|YP_002381840.1| histidyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226737075|sp|B7LKC4|SYH_ESCF3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218355590|emb|CAQ88201.1| histidyl tRNA synthetase [Escherichia fergusonii ATCC 35469]
          Length = 429

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 129/442 (29%), Gaps = 52/442 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP+       V  II+      G  E+  P L+   L+  + G   D   K
Sbjct: 6   QSVRGMNDYLPVETAVWQRVERIIKSVVESYGYSEIRTPILEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           EM    DR   A         P            H   Y       + +   FR E RP+
Sbjct: 66  EMYTFNDRERDAKEVVSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRHE-RPQ 123

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F       F L           + +   R +  LG+    +  E   IG   
Sbjct: 124 KG--RYRQFHQIGLEVFGLQGPDIDAE---LIMLTARWWRELGISE-HVTLELNSIGSLE 177

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNE 265
           +      A     +    K   D            + S N  +        A    +  E
Sbjct: 178 ARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEE 237

Query: 266 KLFDSLPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGA 321
                    K + + GI          G   Y+  +      + G +      G Y    
Sbjct: 238 SREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLV 297

Query: 322 M----RVVAAVIESSHDGKGIIWPDSVAPF----KISLINIKAHDQVCRDACEKIYARLS 373
                R  +AV  +    + ++   +V P      +  I + A     + A   +  RL 
Sbjct: 298 EQLGGRATSAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQPAAMALAERL- 356

Query: 374 KVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                       E  G +             F  AD  G  + V++G   V++    +K 
Sbjct: 357 ----------RDELPGVKLMTNHGGGNFKKQFGRADKWGARIAVVLGESEVANGTAVVKD 406

Query: 421 RLTGIREDMSLEEVINYASHRF 442
             +G +  ++ + V  +     
Sbjct: 407 LRSGEQTAVAQDSVAAHLRTLL 428


>gi|262305787|gb|ACY45486.1| glu- + pro-tRNA synthetase [Scutigerella sp. 'Scu3']
          Length = 134

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+ G   + G  +S      F   +  +  YV   S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGGTSHHLGQNFSKMFEIVFDDPETNEKQYVHQNSWGLT-TRTIGVLVMVHADNK 73

Query: 337 GIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  ++  +  +I             +     C +    L K G     D       
Sbjct: 74  GLVLPPRISSVQAIIIPCGITATLGDEDKKKLIAKCNEYDGLLCKHGIRSKVDSRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|184159299|ref|YP_001847638.1| seryl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|332872559|ref|ZP_08440528.1| serine--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|238690993|sp|B2HXU5|SYS_ACIBC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|183210893|gb|ACC58291.1| Seryl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|322509210|gb|ADX04664.1| seryl-tRNA synthetase [Acinetobacter baumannii 1656-2]
 gi|323519239|gb|ADX93620.1| seryl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739245|gb|EGJ70103.1| serine--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 423

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDADRL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 310 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 368


>gi|260776356|ref|ZP_05885251.1| seryl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607579|gb|EEX33844.1| seryl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 435

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFEVKDHVDLGEMGDGLDFASATKITGARFIIMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +G+++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGEDLFHTEPLTEKVNDEEPRKLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 IVDEADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEESMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNTWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|78065554|ref|YP_368323.1| seryl-tRNA synthetase [Burkholderia sp. 383]
 gi|123569084|sp|Q39IN7|SYS_BURS3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|77966299|gb|ABB07679.1| seryl-tRNA synthetase [Burkholderia sp. 383]
          Length = 433

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDK 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+    + N  
Sbjct: 169 ARLHRALAQFMIDTHTLQHGYTETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGEENKV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVDASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PEASYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|33635224|emb|CAE21549.1| putative seryl-tRNA synthetase [Prochlorococcus marinus str. MIT
           9313]
          Length = 429

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L +      SG+   + +E  R A 
Sbjct: 170 FVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNTASLTGSGQLPKFAEESFRCA- 228

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 229 --EDDLWLTPTAEVPVTSLHRDEIIPAEQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 286

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           F   + Y F + P+ S+ ++ ++      +   L L    +   +G +G   S
Sbjct: 287 FNKVELYWF-VHPDHSQAAHAQITADAEAVLQALELPYRVIELCTGDLGFSSS 338


>gi|296242907|ref|YP_003650394.1| glycyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
 gi|296095491|gb|ADG91442.1| glycyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
          Length = 581

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 10/163 (6%)

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDS 343
           F  G ++        +   G      +     G  R++  V+E+S   +     +  P  
Sbjct: 416 FKLGREF-FIFKEEVEKVHGVKIVPHVVEPSFGLERLLYVVLENSLKTREEKTVLALPPQ 474

Query: 344 VAPFKISLINI----KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +AP+ +++  +    K   +   +   K Y  L   G +  +DD    IG ++A  D +G
Sbjct: 475 IAPYHVAVFPLVTGSKPEHRRIVELARKTYWDLINAGFNCIYDD-DGSIGRRYARVDEIG 533

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            PL V V  + + D  V ++ R T  +E + L  +  Y + + 
Sbjct: 534 VPLAVTVDYQSIEDETVTVRDRDTTQQERVHLGNLKKYLAEKL 576



 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 65/204 (31%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGR--------- 85
            G Y + PLG      +  +  +    +    +E+  P +    ++  SG          
Sbjct: 32  AGFYDYGPLGVLLKRRIQDLWLKYFVYSNDMVVEVETPIINPRVIFKASGHEESFTDPVT 91

Query: 86  ----------YDSYGKEMLRLA------DRNDKAMIYGPTHEEVMT----------DIFR 119
                      D   KE+L +       +   K +I         +           +F+
Sbjct: 92  ECLKCGRIYRVDHLLKEVLGVEAEGLSPEEYKKIIIEKNVKCPACSGELAEPSYTLLLFK 151

Query: 120 SHIKSYR---------------------------NLPFTFYQIQLKFRDELRPRFGVMRS 152
           + I  Y+                            LP    Q+    R+E+ PR G++R 
Sbjct: 152 TEIGPYKGSLGYLRPENAQGMFVNFANVLRITRNKLPLGIAQVGKVARNEISPRQGLLRL 211

Query: 153 REFLMKDAYSFDLTPEGSKHSYNK 176
           REF + +   F   PE       +
Sbjct: 212 REFTIMEMEFF-FDPETVSEDIRE 234


>gi|330875798|gb|EGH09947.1| seryl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|323526577|ref|YP_004228730.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383579|gb|ADX55670.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 446

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 135/448 (30%), Gaps = 71/448 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  K        ++   + + + +           A  +    + L      
Sbjct: 182 AHRVELIAYLEKHMDVLDEDAKRRLYTNPLRVLDTKNPALQEVAQNAPKLIDFLGAESRA 241

Query: 274 NKRVSARGIEVGHIFYF-------GTKY---------SLPMSATFKGADGKDHYVQM--- 314
           +     R ++  +I +        G  Y         +  + A    A G  +   +   
Sbjct: 242 HFEGLQRILKANNIPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 315 -------GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E             + P      +  +   D   R+  
Sbjct: 302 GGKATAACGWAMGIERILELLKEE-----------QLVPEDEGCDVYVVHQGD-AAREQA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             I  RL   G DV      D  G+    +     AD  G    V++G   +++  V +K
Sbjct: 350 FIIAERLRDTGLDVILHCSAD--GQSASFKSQMKRADASGAAFAVVLGEDEIANGTVGVK 407

Query: 420 -HRLT------GIREDMSLEEVINYASH 440
             R T        + ++  E++  +  +
Sbjct: 408 PLRDTSANGGKSEQHNVPAEDLTEFLIN 435


>gi|255007813|ref|ZP_05279939.1| seryl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313145518|ref|ZP_07807711.1| seryl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313134285|gb|EFR51645.1| seryl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 424

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 105/317 (33%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  ++G  E+  PT+ +A     +G+      +M  
Sbjct: 164 GAGFPVYKGKGAQLQRALINFFLDEARKSGYTEIMPPTVVNAASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE S+ S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSRQSHQEMLDHVEGLLQKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF + SE                                    
Sbjct: 332 ----------FTAALCFDFEVYSEAQKRW------------------------------- 350

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                     +EV  +  F T  +  +   ++  + K      +    +   R+VAA++E
Sbjct: 351 ----------LEVSSVSNFDTYQANRLKCRYRSGEKKTELCHTLNGSALALPRIVAALLE 400

Query: 331 SSHDGKGIIWPDSVAPF 347
           +    +GI  P ++ P+
Sbjct: 401 NHQTPEGIRIPKALVPY 417


>gi|171321334|ref|ZP_02910293.1| histidyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171093391|gb|EDT38579.1| histidyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 446

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 138/444 (31%), Gaps = 63/444 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRASIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +       +      M     R++  LGL  I +          RA      
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F  + D  E             + ++N    +I      +  +    +      
Sbjct: 188 IKYLEQFADVLD--EDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFEG 245

Query: 264 NEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHY 311
            ++L  +     +      RG++     +F       G + ++     +           
Sbjct: 246 LQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKP 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIY 369
                + +G  R    ++E   +         +AP +  + +  +    +  R+      
Sbjct: 306 TAACGWAMGIER----ILELLKEED-------LAPEQEGVDVYVVHQG-ETAREQAFIAA 353

Query: 370 ARLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
            RL   G DV +    D  G     +     AD  G    VI G + V++  V +K  R 
Sbjct: 354 ERLRDTGLDVIFHCSAD--GASASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRG 411

Query: 423 TGI------REDMSLEEVINYASH 440
            G       ++ + +E +  +  +
Sbjct: 412 AGEEGEKNAQQTVPVENLTEFLIN 435


>gi|167855515|ref|ZP_02478278.1| seryl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853381|gb|EDS24632.1| seryl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 434

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-- 103
            +    ++  + +    + G +E  VP L + D    +G+   +G+++        +   
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETYVPYLVNHDTLYGTGQLPKFGEDLFHTQPLEGQDPN 230

Query: 104 -----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                    PT E  +T++ R  I    +LP         FR E     R   G++R  +
Sbjct: 231 AVQKPYALIPTAEVPVTNLVRDEILDEESLPLKLTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   L L    M   SG +G   S     E 
Sbjct: 291 FDKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLNLPYRKMLLCSGDMGFGSSKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|89892754|ref|YP_516241.1| seryl-tRNA synthetase [Desulfitobacterium hafniense Y51]
 gi|122484260|sp|Q252J5|SYS_DESHY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|89332202|dbj|BAE81797.1| seryl-tRNA synthetase [Desulfitobacterium hafniense Y51]
          Length = 421

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 12/207 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    + + + +  +  G +E+  P +   +  + +G+   + ++  ++A   
Sbjct: 164 FYKGLGAKLERALISFMLDRHSAKGYVEVLPPYMVHRNSMIGTGQLPKFEEDAFKVA--- 220

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T+++R  I     LP         FR E     R   G++R  +F 
Sbjct: 221 GTDYFLIPTAEVPVTNMYREEILEAEQLPIHHCAYSACFRAEAGSAGRDTRGLIRQHQFN 280

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S      +      I   L L    M   +G +G   +     E  +
Sbjct: 281 KVELVKFAF-PENSYEELESLTRDAESILQELELPYRVMALSTGDLGFTSAKTYDLEVWL 339

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF 239
            +     ++    +F DF     N  F
Sbjct: 340 PSFNTYREISSCSNFEDFQARRANIRF 366


>gi|163856331|ref|YP_001630629.1| histidyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|163260059|emb|CAP42360.1| hisS [Bordetella petrii]
          Length = 431

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 144/441 (32%), Gaps = 35/441 (7%)

Query: 24  KLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           K M +     + +   G+   LP      +   +I+RE     G   +  P L+   L+ 
Sbjct: 2   KKMTQA--FQKVAAIRGMNDVLPGDGARWEQFESIVREWLRGYGYRNVRTPVLEHTRLFA 59

Query: 82  ES-GR-YDSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
              G   D   KEM    D  N  ++   P     +      H   Y + P   Y I   
Sbjct: 60  RGIGEVTDIVEKEMYTFTDALNGDSLTMRPEMTAGVVRASIEHNLLY-DRPQRVYSIGPV 118

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FR E RP+ G  R R+F   D  +              M     R++ RLGL  + +   
Sbjct: 119 FRHE-RPQRG--RYRQFHQIDVEALGFAGPDVDAELIVMLA---RLWKRLGLTDVRLELN 172

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           S     + +     L +  E       +     + S      D     ++     +    
Sbjct: 173 SLGQPAERAAHRAALIEHLERHRDILDEDGQRRLYSNPLRVLDTK-NPAMQAMADSAPRL 231

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADGKDHYVQMG 315
              + +E         + ++  GIE         G   Y+L +        G    V  G
Sbjct: 232 FDFLGDESRAHFDGLCQLLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGG 291

Query: 316 SYGIGAMRVVA-----AVIESSHDGKGI-IWPDSV--APFKISLINIKAHDQVCRDACEK 367
               G + ++      AV  +    + + +W  SV  AP     + +    +  +    +
Sbjct: 292 GRYDGLIELLGGKPAPAVGFAIGMERLLDLWEQSVPPAPTPECEVYVVHQGEAAQRLAAR 351

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT- 423
           +  +L   G  V         G +  F  AD  G  + VI+GS  V+     +K  R   
Sbjct: 352 VGEQLRDAGLSVIV--HAGSSGFKSQFKRADASGARVAVILGSDEVAAGTASVKFLRADA 409

Query: 424 -GI--REDMSLEEVINYASHR 441
            G   ++ ++L+ + +    +
Sbjct: 410 AGEAAQQQVALDRLADVLKSK 430


>gi|317047549|ref|YP_004115197.1| seryl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316949166|gb|ADU68641.1| seryl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 430

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 14/197 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-- 103
            +    ++  + +    + G +E  VP L + D    +G+   +G+++      +++A  
Sbjct: 170 ARLHRALSQFMIDLHTQQHGYLETYVPYLVNHDTLYGTGQLPKFGEDLFHTKPLDEEAGS 229

Query: 104 --MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
                 PT E  +T++ R  I    NLP         FR E     R   G++R  +F  
Sbjct: 230 SNYALIPTAEVPLTNLVRDEIVEEENLPIKLTAHTPCFRSEAGSYGRDTRGLIRMHQFDK 289

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVL 213
            +       PE S  +  ++     ++   L L    +   +G +G   +     E  + 
Sbjct: 290 VEMVQIVA-PETSMQALEELVGHAEKVLQLLNLPYRKVLLCTGDMGFGSTKTYDLEVWLP 348

Query: 214 ADTGETQVFCSKDFMDF 230
           A     ++    +  DF
Sbjct: 349 AQNTYREISSCSNMWDF 365


>gi|313885298|ref|ZP_07819049.1| serine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619404|gb|EFR30842.1| serine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 432

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 7/180 (3%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG +    +   + +     G  EM VP + +      +G++  + +++ +L D
Sbjct: 163 FVYYKGLGARLERAIYNFMLDTHTNNGYKEMIVPYIVNDKAMFGTGQFPKFKEDVFQLTD 222

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             ++ +   PT E  +T+ +   I     LP  F  +   FR E     R   G++R  +
Sbjct: 223 --ERGLTLIPTAEVPLTNFYADEILDLDQLPTKFVGLSPAFRSEAGSAGRDTRGLIRMHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F   P+ S      M      I   L +    +   +G +G   +  + + A
Sbjct: 281 FNKVELVKF-AHPDHSYEELEGMTRDAESILQALEIPYRTIVLCTGDMGFSAAKTYDIEA 339


>gi|259500577|ref|ZP_05743479.1| histidine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|302191268|ref|ZP_07267522.1| histidyl-tRNA synthetase [Lactobacillus iners AB-1]
 gi|309806600|ref|ZP_07700597.1| histidine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|309807560|ref|ZP_07701512.1| histidine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|325912619|ref|ZP_08175002.1| histidine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|259167961|gb|EEW52456.1| histidine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|308167020|gb|EFO69202.1| histidine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308169166|gb|EFO71232.1| histidine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|325478040|gb|EGC81169.1| histidine--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 428

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 138/437 (31%), Gaps = 56/437 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      D V  I +    +    E+  P  ++ +++  S     D   K
Sbjct: 4   QKPKGTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFGV 149
           EM    D+ D+ +   P     +   +  +       P     + I   FR E RP+ G 
Sbjct: 64  EMYDFMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +        V    +   LG+K   +   S          
Sbjct: 122 -RQREFHQIGVESFGSDNALADVET---IVLAHDLLSTLGIKKYELHINSLGNEAVRTAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    PI   LS +      T   ++  SKD  D    S      D +  +   + 
Sbjct: 178 RQALVDYFTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLD-DESKKN 236

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARG------------IEVGHIFYFGTKYSLPMS 299
           +       S++  + + D           G             +       G +Y+    
Sbjct: 237 FEFIIRTLSELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNH--- 293

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +  DG         +GIG  R++  +   +        P+ +    I        ++
Sbjct: 294 -LVEEFDGPKTPAV--GFGIGEERLMLVLKAQN--------PELLTDSNIDFYITNIGEE 342

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E I   L K G  V +D   +++ +QF  AD       + +G + + ++ + IK
Sbjct: 343 TITKTVE-IARELRKQGLKVQYDVEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIK 401

Query: 420 HRLTGIREDMSLEEVIN 436
               G     +++E+ N
Sbjct: 402 RLSDGKSYAFNMDEIAN 418


>gi|262371083|ref|ZP_06064405.1| histidyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262313969|gb|EEY95014.1| histidyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 431

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/438 (15%), Positives = 138/438 (31%), Gaps = 43/438 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP    A   +   +    +  G  ++ +P ++  +L+  S     D   KEM 
Sbjct: 8   KGFNDILPTQTPAWRRLEQHLASLMDAYGYQQIRLPIVEQTNLFKRSIGDATDIVEKEMY 67

Query: 95  RLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+ +  +++   P            H       P  +Y I   FR E +P+ G  R 
Sbjct: 68  TFLDKGNPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWY-IGPMFRYE-KPQKG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGGD 205
           R+F      +F +           M     R++ R+G+             ++       
Sbjct: 124 RQFHQFGVETFGVATPDMDAELILM---TARLWKRMGVADKVQLELNTLGESDERAAYRA 180

Query: 206 LSHEFIVLADTGETQ------------VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
              EF+        +            +  SKD     I        D +   ++    T
Sbjct: 181 ALVEFLESHKNDLDEDSQRRLTTNPLRILDSKDAKTQAILENAPKLHDFMGEETLQHFAT 240

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGKD 309
                T    +  +   L        + +      + G++ ++     + G      GK 
Sbjct: 241 LQEYLTDAGVSFVINQKLVRGLDYYNKTVFEWTTTHLGSQGTVCAGGRYDGLVGQLKGKA 300

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                       M  +  ++E   D   I         ++ L+   A         E+I 
Sbjct: 301 DQSVPAVGFAMGMERLLLLLEQVEDATPIR------DCEMFLLADPASQGKALVLAEQIR 354

Query: 370 ARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +L        +     G  + SQ   AD  G    +I+G + V  ++  +K   T  + 
Sbjct: 355 NQLDAASSTLRLKVGSHG-SMKSQMKKADQSGALFALILGEREVEAAQFAVKELATAEQT 413

Query: 428 DMSLEEVINYASHRFSNN 445
            +++++++ +   +FS+ 
Sbjct: 414 LVAVDDIVPFMIEKFSSK 431


>gi|253990316|ref|YP_003041672.1| seryl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253781766|emb|CAQ84929.1| seryl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 429

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 83/247 (33%), Gaps = 20/247 (8%)

Query: 12  QENPRDAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
           +    D E+  H  +     G+    +    G    +  GQ A     +   +      +
Sbjct: 128 EPRKYDFEVKDHVSLGELANGLDFAAAVKLTGSRFVVMKGQIARLHRALAQFMLNLHTEQ 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVMTDIFRS 120
            G +E  VP L + D    +G+   +G+++     L +         PT E  +T++ R 
Sbjct: 188 HGYLETYVPYLVNHDTLYGTGQLPKFGEDLFHTKPLEEETGSHYALIPTAEVPVTNLVRD 247

Query: 121 HIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            I     LP         FR E     R   G++R  +F   +     + PE S ++  +
Sbjct: 248 EILDESELPLRMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VHPEESMNALEE 306

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +     ++   L L    +   +G +G         E  + A     ++    +  DF  
Sbjct: 307 LTGHAEKVLQLLNLPYRKVLLCTGDMGFGACKTYDLEVWLPAQNAYREISSCSNMWDFQA 366

Query: 233 PSENTDF 239
                 F
Sbjct: 367 RRMQARF 373


>gi|224024370|ref|ZP_03642736.1| hypothetical protein BACCOPRO_01094 [Bacteroides coprophilus DSM
           18228]
 gi|224017592|gb|EEF75604.1| hypothetical protein BACCOPRO_01094 [Bacteroides coprophilus DSM
           18228]
          Length = 425

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 105/318 (33%), Gaps = 69/318 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E +  G  E+  PT+ +A     +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINFFLDEAHAAGYEEIMPPTVVNAASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 223 --HCNLDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKIELVRID-KPEHSKQSHQEMLDHVEGLLKKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF + SE                                    
Sbjct: 332 ----------FTAAICFDFEVYSEAQKRW------------------------------- 350

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ-MGSYGIGAMRVVAAVI 329
                     +EV  +  F T  +  +   ++   D K      +    +   R+VAA++
Sbjct: 351 ----------LEVSSVSNFDTYQANRLKCRYRKESDKKTELCHTLNGSALALPRIVAALL 400

Query: 330 ESSHDGKGIIWPDSVAPF 347
           E++   +GI  P ++ P+
Sbjct: 401 ENNQTPEGIRIPKALVPY 418


>gi|213157669|ref|YP_002320467.1| seryl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|215482472|ref|YP_002324658.1| seryl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|301344900|ref|ZP_07225641.1| seryl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301511071|ref|ZP_07236308.1| seryl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|332854214|ref|ZP_08435234.1| serine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332866344|ref|ZP_08436949.1| serine--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|226701385|sp|B7GXI2|SYS_ACIB3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701417|sp|B7I6V5|SYS_ACIB5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|213056829|gb|ACJ41731.1| seryl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|213987623|gb|ACJ57922.1| seryl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|332728139|gb|EGJ59527.1| serine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332734692|gb|EGJ65796.1| serine--tRNA ligase [Acinetobacter baumannii 6013113]
          Length = 423

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDADRL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 310 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 368


>gi|33861744|ref|NP_893305.1| seryl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|46577195|sp|Q7V0R7|SYS_PROMP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33640112|emb|CAE19647.1| Seryl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 424

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +  +  G +E+  P L +++    SG+   +  E  + A   +  +
Sbjct: 171 NGARLERALVNFMLDVHSNNGYLELMPPALVNSESLQGSGQLPKFSNESFKCA---NDDL 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   ++ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 228 WLSPTAEVPLTAFHKNEIIDPKILPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ ++      I  +L L    +   +G +G   S     E  + +  
Sbjct: 288 YWFCH-PNKSLEAHKEITADAESILKKLNLPYRSVDICTGDLGFSSSRTFDLEVWLPSSQ 346

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 347 CYREISSCSNCLDF 360


>gi|239502305|ref|ZP_04661615.1| seryl-tRNA synthetase [Acinetobacter baumannii AB900]
          Length = 423

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDADRL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 310 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 368


>gi|321441323|gb|ADW85076.1| glu- + pro-tRNA synthetase [Platynota idaeusalis]
          Length = 134

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   D  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPDTQEKKYVYQNSWGLT-TRTIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++             +   D C+ +   L   G     D       
Sbjct: 74  GLVLPPRVADIQVIVVPCGITASTAGEEREKLMDQCKALTEELVSKGLKAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|294340309|emb|CAZ88690.1| Seryl-tRNA synthetase (Serine--tRNA ligase) (SerRS) [Thiomonas sp.
           3As]
          Length = 430

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 8/198 (4%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E  VP + SA     +G+   + +++  +     ++  
Sbjct: 172 ARLHRALAQFMLDVHTTEHGYTEAYVPYIVSAQALRGTGQLPKFEEDLFPVKHGEGESHY 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  F      FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPLTNLVRDQIVDAVQLPLRFVAHTPCFRSEAGSGGRDVRGLIRQHQFDKVE-L 290

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGET 219
            +    E S  +  ++      I  RL L    +   +G +  G   +H+  V      T
Sbjct: 291 VWVTRAEESATALEQLTAHAESILQRLQLPYRTIVLCTGDMGFGSARTHDIEVWLPAQNT 350

Query: 220 QVFCSKDFMDFPIPSENT 237
               S         +   
Sbjct: 351 YREISSCSNMEAFQARRM 368


>gi|294140147|ref|YP_003556125.1| histidyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293326616|dbj|BAJ01347.1| histidyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 424

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 145/437 (33%), Gaps = 46/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        + A++RE  +  G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKLEAVLRETVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTASTVRAGNQHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       + +           + +   R++ +LG+    +  E   +G        
Sbjct: 122 YRQFNQFGVEVYGIGTADVDAE---VLMLSARLWEKLGITD-HVTLELNTLGDPAERATY 177

Query: 212 VLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A     + F  +   +            + ++N +   ++     +  +         
Sbjct: 178 REALIAYLEQFKEQLDEESQRRMYTNPLRVLDTKNPEVQALLVDAPELMDYLGEETRAHF 237

Query: 262 VHNEKLFDSLPE---NKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
            H  +L D++           RG++     +F       G++ ++     + G      G
Sbjct: 238 SHLCELLDAVGIKYVINPRLVRGLDYYNRTVFEWVTTSLGSQGTVLAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACE 366
           K+       + +G  R+V  +                A   + +  +    +V      +
Sbjct: 298 KNTPAV--GFAMGLERIVLMLETLELTDDIP------ATVDVYVTAMGDASKVEAIKIAQ 349

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI 425
            +   L   G  V     G     Q   AD  G  + +++G   ++ ++V +K+ R    
Sbjct: 350 ALRTELP--GLRVMSHCGGGNFKKQMKRADKSGALIALVIGEDELASNQVAVKYLREKKE 407

Query: 426 REDMSLEEVINYASHRF 442
           +  ++ + +  Y +   
Sbjct: 408 QALVARDGLATYIAELI 424


>gi|261868430|ref|YP_003256352.1| seryl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413762|gb|ACX83133.1| seryl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 438

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 24/237 (10%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ  K    +   + +    + G  E
Sbjct: 134 DFEVKDHVTLGENLQGLDFAAAVKLTGSRFVVMKGQIAKLHRAIAQFMLDLHTEQHGYTE 193

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRND--KAMIYGPTHEEVMTDIFRSH 121
             VP L + D    +G+   +G+++         D N+  +     PT E  +T++ R  
Sbjct: 194 AYVPYLVNHDTLYGTGQLPKFGEDLFHTKPLEGQDPNEVQRTYGLIPTAEVPVTNLVRGE 253

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    NLP         FR E     R   G++R  +F   +     + PE S  +  ++
Sbjct: 254 ILDAENLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VEPEKSMEALEEL 312

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
                ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 313 TGHAEKVLQLLGLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYREISSCSNMWDF 369


>gi|257465419|ref|ZP_05629790.1| seryl-tRNA synthetase [Actinobacillus minor 202]
 gi|257451079|gb|EEV25122.1| seryl-tRNA synthetase [Actinobacillus minor 202]
          Length = 435

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-------D 98
            +    ++  + +    + G +E +VP L + D    +G+   +G+++           +
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
              +     PT E  +T++ R  I     LP  +      FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDEETLPLRYTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +     +TPE S  +  ++     ++   L L    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQI-VTPEKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|218438799|ref|YP_002377128.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|226701389|sp|B7KCF5|SYS_CYAP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218171527|gb|ACK70260.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 430

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 12/205 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+  P L +      +G+   + +E  + +   +  + 
Sbjct: 176 GAALERALINFMLDRQIEAGYLEVMPPILINTTSLQGTGQLPKFSEESFKCS---EDELW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R ++     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYRDNVIEGEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+  +  +      I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KL-VHPETSEAEHEALVKDAEAILQALKLPYRVIELCTGDLGFGAAKCYDIEVWLPSSDT 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDI 242
             ++    +F DF     N  F + 
Sbjct: 352 YREISSCSNFRDFQARRANIRFKEK 376


>gi|182438813|ref|YP_001826532.1| glycyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326779468|ref|ZP_08238733.1| glycyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|178467329|dbj|BAG21849.1| putative glycyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326659801|gb|EGE44647.1| glycyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 460

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 143/446 (32%), Gaps = 64/446 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+               + +    + + D+WV SG   ++   +    
Sbjct: 33  WDYGPLGVEMKENLKRQWWRYMVTAREDVVGLDSSVILAPDVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
             + +         +EE      +  +    +L       +  F  E +   G++ +   
Sbjct: 93  SCHKRYRADHLEEAYEEKHG---KPPVNGLADLNCPNCGNKGTF-TEPKEFSGLLSTHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--LKSIPMRAESGP--IGGDLSHEF 210
                     L PE ++            IF   G  L++   +   G   +G    +E 
Sbjct: 149 PTQDSGSVAYLRPETAQ-----------GIFTNFGQVLQTSRKKPPFGIAQMGKSFRNEI 197

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P E+ ++                    +    E   + 
Sbjct: 198 TPGNFIFRTREFEQMEMEFFVKPGEDEEWQQYWMDQRWNWYTDLGMREENMRWFEHPKE- 256

Query: 271 LPENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT--------FKGADGKD 309
             +    S R  ++ + F FG             T Y L   +         +     + 
Sbjct: 257 --KLSHYSKRTADIEYRFRFGGSEWGELEGVANRTDYDLKAHSEASGTDLQFYDQEANER 314

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
               +     G  R + A +  ++                 +     +AP K++++ +  
Sbjct: 315 WTPYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGVMEKRTVMRLDHRLAPVKVAVLPLSR 374

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           + Q      + + A L K   ++ +DD G  IG ++   D +G P  V V    + D+ V
Sbjct: 375 NPQ-LSPKAKGLAADLRK-NWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAV 431

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++ R T  +E +SL+++  Y   R 
Sbjct: 432 TVRERDTMKQERVSLDQIQAYLGSRL 457


>gi|308179597|ref|YP_003923725.1| serine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308045088|gb|ADN97631.1| serine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 423

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G      V + + +    + G  E+  P L +A     +G++  + +++  + 
Sbjct: 163 FVYYKDAGALLERAVYSFMLDLHIQKQGYHEIIPPYLVNAQTMYGTGQFPKFKEDVYTVE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 M   PT E  +T+ + + I S   LP  F  +   +R E     R   G++R  
Sbjct: 223 SSG---MTLIPTAEVPLTNYYANEILSEDQLPTYFTAMTPCYRSEAGSAGRDTRGLIRMH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   +   PE S     K+  +   +   LGL    ++  +G  G   +  + V 
Sbjct: 280 QFHKVEMVKY-CKPENSYDELEKLTDNAEEVLRELGLAYHVIKLSTGDTGFSSAKTYDVE 338


>gi|302185001|ref|ZP_07261674.1| seryl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|262305735|gb|ACY45460.1| glu- + pro-tRNA synthetase [Endeis laevis]
          Length = 134

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      ++    K   +V   S+GI   R +  +     D  
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIIYEDPKTKQKEFVYQNSWGIT-TRTIGVMTMVHGDNS 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P +VA  +  +I                 DACE +  +L+  G  V  D       
Sbjct: 74  GLVLPPNVASVQAIIIPCGITASLSDEDKNKLIDACETLEQKLTDSGIRVSSDTRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|251778552|ref|ZP_04821472.1| serine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082867|gb|EES48757.1| serine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 425

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +   ++     ++     G  E+  P + + D    +G+   + ++  ++    +  
Sbjct: 171 LGARLERSIINYFLDKHTTENGYTEILPPYMVNRDSMTGTGQLPKFEEDAFKV---ENNG 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R+ + S   LP         FR E     R   G++R  +F   +
Sbjct: 228 YFLIPTAEVPVTNMYRNEVLSGDILPIKHAAYSACFRAEAGSAGRDTRGLVRQHQFNKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              F   PE S    NK+      +   LGL    +R   G +G
Sbjct: 288 LVKF-CKPEDSYDELNKLVEDAESVLQGLGLPYRIVRICKGDLG 330


>gi|238598681|ref|XP_002394671.1| hypothetical protein MPER_05401 [Moniliophthora perniciosa FA553]
 gi|215464082|gb|EEB95601.1| hypothetical protein MPER_05401 [Moniliophthora perniciosa FA553]
          Length = 164

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQV 360
           ++    +     G  R++  ++E S         +G++  P  VAP K+ ++ + A ++ 
Sbjct: 1   REFTPNVIEPSFGLGRILYTLLEHSFWSREQDIERGVLSLPPLVAPTKVLIVPLSAKEE- 59

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L + G     DD    IG ++A  D LG P  + V    V +  V ++ 
Sbjct: 60  FDPLVNEISTKLRRAGIFSRVDDSNTSIGKRYARNDELGTPYGITVDFASVQNRTVTLRE 119

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +   S++EVI   +    
Sbjct: 120 RDTMDQRISSIDEVIATVTELVE 142


>gi|330965617|gb|EGH65877.1| seryl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|330958183|gb|EGH58443.1| seryl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 E    +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVAPDESMA-ALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|300214567|gb|ADJ78983.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 406

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 142/426 (33%), Gaps = 62/426 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DS 88
           M +Q  KG    LP        V    RE   +    EM  P  +S +++   SG   D 
Sbjct: 1   MKYQRPKGTADILPSESVKWQYVEEKARELFKKYRYEEMRTPIFESFEVFSRTSGETSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    + RS +++         PF  Y +   FR E 
Sbjct: 61  VTKEMYDFYDKGDRHITLRP---EGTAGVVRSFVENKLYGPEVQKPFKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---- 199
           RP+ G  R REF      +F +           M V  L+     GL S+ +   +    
Sbjct: 117 RPQSG--RLREFHQIGVEAFGVDNPTLDVEVMAMAVDLLK---SFGLNSLRVAVNTLGDL 171

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P   +LS +          +V  SKD  D  I +      D ++ 
Sbjct: 172 ETRNNYRQALIDYLEPFEAELSDDSKERLHKNPLRVLDSKDEKDKEIVANAPSILDYLTE 231

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT---- 301
           ++  + +    +  +D+  E + DS                IF   +  S   +      
Sbjct: 232 DA-QKHFETVKSLLNDLGIEYVIDSNMVRGLDYYNH----TIFEIMSD-SKAFNGKWTTV 285

Query: 302 -----FKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                + G     G      +G +G+G  R++  +     D +    P    P  + ++ 
Sbjct: 286 CAGGHYSGLVEQLGGPQTPGVG-FGLGVERLLLIL-----DAEEDALPIEN-PLDVYVVG 338

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I     V   A  K+   L   G     D +  +   QF  A+ L     + +G   + +
Sbjct: 339 IG---DVTNAATLKLVQNLRHQGFTADRDYLNRKPKGQFKSANRLNARFTLTIGETELQE 395

Query: 414 SKVEIK 419
            +  +K
Sbjct: 396 QEANLK 401


>gi|260913153|ref|ZP_05919635.1| histidine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632740|gb|EEX50909.1| histidine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 423

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 139/427 (32%), Gaps = 47/427 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        V   +R      G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWVEGKVRSVLQNYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y       + +   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNQE-QRLWYMGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----------------- 204
            F +           + +   R++  LG+    +  +   IG                  
Sbjct: 131 VFGIPNPEIDAE---LIILTARLWKELGI-FEHVTLQLNSIGSLEARKNYRSALVEFLQQ 186

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               LS E     +    ++  +K+     + +E     D +  +S            + 
Sbjct: 187 HVDLLSDEEKERLEKNPLRILDTKNQALQEVLNEAPKLLDYLDDDSREHFAQLCSLLDAI 246

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGI 319
               ++   L        + +        G + ++     + G       H      + +
Sbjct: 247 GIQYEVNPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHSTTGVGFAM 306

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVG 376
           G  R+V  V E + D   I+ P +     + +  +   +     A    E + + LS   
Sbjct: 307 GLERLVLLVQEVNKD---ILLPSA-----VDIYVVYQGEGTTLAAFRLAETLRSELS--H 356

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVI 435
             V     G     QF  AD  G  L +++G   V + +V +KH L G  ++ ++L E++
Sbjct: 357 LRVMTHCSGGNFKKQFKRADKSGATLALVIGESEVQNQQVVVKHLLNGAEQQTIALSEIV 416

Query: 436 NYASHRF 442
            Y  +  
Sbjct: 417 AYIKNNL 423


>gi|242372594|ref|ZP_04818168.1| seryl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242349649|gb|EES41250.1| seryl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 435

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 177 GAHLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 233

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 234 YTIPTAEVPLTNFYRDEIIQPGVLPEKFTGQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 293

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S  +   M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 294 VRF-EKPEDSWDALEDMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 352

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 353 DYKEISSCSNCTDFQARRANIRF 375


>gi|298491543|ref|YP_003721720.1| seryl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233461|gb|ADI64597.1| seryl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 426

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   +  +  + G IE+S P L + D    +G+   + +E  + AD     + 
Sbjct: 175 GAALERALIQFMLSKHIQAGYIEVSPPLLVNTDSLTGTGQLPKFAEESFKCAD---DELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+ +R  I +   LP         FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNFYRGEIINAEELPIYHCAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S     K+  S   I   L L    +   +  +G   +     E  +   + 
Sbjct: 292 KL-VKPENSFDELEKLVESAESILQALKLPYRVINLCTADVGFGATKTYDLEVWLPYSSK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     +  F +
Sbjct: 351 YREISSCSNCGDFQARRADIRFKE 374


>gi|154150357|ref|YP_001403975.1| glycyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|153998909|gb|ABS55332.1| glycyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 573

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLI 352
                 G++    +     G  R+  AV+E ++D           + +   VAP ++++ 
Sbjct: 416 EVVDIRGEEIVPHVIEPSYGIDRMCYAVLEQAYDEDTADGEKRTVLRFSPQVAPVQVAVF 475

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            + A D        +I A L K G    +DD G  IG ++   D +G P  + V      
Sbjct: 476 PLMARD-GLDTLAGEITATLQKQGILAEYDDSGA-IGRRYRRQDEIGTPFAITVDYDSKE 533

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +  V ++ R +  +  ++++++    S     +R
Sbjct: 534 NHTVTLRDRDSMKQVRIAVDKIPETVSALVRGDR 567



 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 72/226 (31%), Gaps = 69/226 (30%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSA 77
           L  R G I   S       G   + PLG      +  I R     + G  E+  PT+   
Sbjct: 11  LAKRRGFIWPTSECYGAVAGFIDYGPLGAMMKRRIENIWRHFYVVQEGYYEIECPTIAQE 70

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK---------------------------AMIYGPTH 110
            +++ SG    +  +M +     +                            A    P  
Sbjct: 71  AVFIASGHVKGFSDKMCQCPHCKEYLRADHVADGGGVCGAATMDNATLAAAIAGCKCPAC 130

Query: 111 EEV--------MTDIFRSHI--------------------------KSYRN-LPFTFYQI 135
            EV           +F++ I                          + YR+ LPF   QI
Sbjct: 131 GEVLGNVEVYNFNLMFQTTIGPGSQRVGYLRPETAQGMFVDFARLLRFYRDKLPFGAVQI 190

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
              +R+E+ PR G++R REF   +A  F    E ++H   K +  Y
Sbjct: 191 GKSYRNEISPRQGMIRLREFTQAEAEIFVHPNEKNRHPAFKRYADY 236


>gi|161525589|ref|YP_001580601.1| seryl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189349682|ref|YP_001945310.1| seryl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221201182|ref|ZP_03574222.1| seryl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221206364|ref|ZP_03579377.1| seryl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221213643|ref|ZP_03586617.1| seryl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|30913321|sp|Q9AEN2|SYS_BURCE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238687044|sp|A9AES3|SYS_BURM1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|13591535|emb|CAC36357.1| putative seryl-tRNA synthetase [Burkholderia cepacia]
 gi|160343018|gb|ABX16104.1| seryl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189333704|dbj|BAG42774.1| seryl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221166432|gb|EED98904.1| seryl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221173673|gb|EEE06107.1| seryl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221179032|gb|EEE11439.1| seryl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 433

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVEASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQIVA-PESSYAALDEMVGHAEAILQKLGLPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|156932943|ref|YP_001436859.1| histidyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531197|gb|ABU76023.1| hypothetical protein ESA_00746 [Cronobacter sakazakii ATCC BAA-894]
          Length = 414

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 130/422 (30%), Gaps = 33/422 (7%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   YLPGDTAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N  ++   P            H   Y       + I   FR E RP+ G  R R+F    
Sbjct: 64  NGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--RYRQFHQLG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A  F L           + +   R +  LG+    +  E   IG   +      A     
Sbjct: 120 AEVFGLQGPDIDAE---LIMLTARWWRALGIAE-HVSLELNSIGSLDARANYRDALIAFL 175

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE---KLFDSLPENKR 276
           +    K   D      +     + S N  V+          D  +E   + F  L     
Sbjct: 176 EQHVDKLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPMLGDYLDEESREHFAGLCAFLD 235

Query: 277 VSARGIEVGHIFYFGTKY--SLPMS--ATFKGADGKDHYVQMGSYGIGAM----RVVAAV 328
            +     V      G  Y          T  G+ G       G Y         R   AV
Sbjct: 236 DAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGT--VCAGGRYDGLVEQLGGRATPAV 293

Query: 329 IESSHDGKGIIWPDSVAP-------FKISLINI-KAHDQVCRDACEKIYARLSKVGCDVF 380
             +    + ++   +V P         I LI              E++   L        
Sbjct: 294 GFAMGLERLVLLVQAVNPEFTADPVVDIYLIASGNGAQSAAMQLAERVRDALPGCKLMTN 353

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +     +   QFA AD  G  + +++G   V++ +V +K   +G ++ ++  E+  +   
Sbjct: 354 YGGGNFK--KQFARADKWGARIALVLGEDEVANRQVVVKDLRSGEQQALAQSELAAHLQT 411

Query: 441 RF 442
             
Sbjct: 412 LL 413


>gi|56479428|ref|YP_161017.1| seryl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|67461652|sp|Q5NXU8|SYS_AZOSE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56315471|emb|CAI10116.1| Seryl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 427

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 11/213 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E+ VP L + D    +G+   +  E+  +   + +   
Sbjct: 170 ARLHRALAQFMLDVHTREHGYTEVHVPYLVNPDSMFGTGQLPKFEAELFSVMKDDGR-FY 228

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R+ + ++  LP  F      FR E     R   G++R  +F   +  
Sbjct: 229 LIPTAEVPITNIVRNELLAHDVLPLKFVGHTPCFRSEAGSYGRDTRGMIRQHQFDKVELV 288

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
             +  P+ S  +  ++      I  +L L    +   +G +G   +     E  + A   
Sbjct: 289 RIEH-PDASWAALEELTGHAEAILRKLELPYRKVVLCTGDMGFSAAKTYDLEVWLPAQKT 347

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++        F        F +    N +V 
Sbjct: 348 YREISSCSCTGAFQARRMQARFRNTQGKNELVH 380


>gi|161350042|ref|NP_895201.2| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|46577198|sp|Q7V608|SYS_PROMM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 425

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L +      SG+   + +E  R A 
Sbjct: 166 FVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNTASLTGSGQLPKFAEESFRCA- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 225 --EDDLWLTPTAEVPVTSLHRDEIIPAEQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           F   + Y F + P+ S+ ++ ++      +   L L    +   +G +G   S
Sbjct: 283 FNKVELYWF-VHPDHSQAAHAQITADAEAVLQALELPYRVIELCTGDLGFSSS 334


>gi|329123881|ref|ZP_08252435.1| serine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|327468488|gb|EGF13969.1| serine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 429

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|305664305|ref|YP_003860593.1| tRNA synthetase class II (G H P and S) [Ignisphaera aggregans DSM
           17230]
 gi|304378874|gb|ADM28713.1| tRNA synthetase class II (G H P and S) [Ignisphaera aggregans DSM
           17230]
          Length = 532

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 110/393 (27%), Gaps = 92/393 (23%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNA-IIREEQNRTGAIEMSVPTLQSADLWV 81
           +K++   G I + S G + + P     L+ +    I E     G  E   P +   ++ +
Sbjct: 189 NKVLEDIGWIKRMSIGQWLYTPPLTHLLNALKKLFIDEVLKPLGFEEAIFPKMYPLEVGI 248

Query: 82  ESGRYDSYGKEM--------------------LRLADR---NDKAMIYGP-------THE 111
           ++G        M                    + + D     D      P          
Sbjct: 249 KTGHLKGVINSMIFASLPKSFNISEFEDLIDYIYVMDEVSPEDLQKYLKPPSYFLCFAQC 308

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           E     F + I    +LP  +Y      +R E     G+ R  EF   +   +   PE  
Sbjct: 309 EPFYWFFENEILDDESLPIKWYDHSGPSYRWESGGIHGIERVIEFHRIEVV-WLGKPEQV 367

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
               N++   Y                                      +V   +  M +
Sbjct: 368 IEIRNELLNKYEYFM---------------------------------DKVLDLEWRMAW 394

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
             P           +   +++           +     D+           +E+G+I   
Sbjct: 395 VTPWYYEQTGITQKVEMDIDRPGTIDFEAWLPYRGPRDDNKNW--------LEIGNISIH 446

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---IWPD----- 342
           GTK++            +   +  G  G G+ R + A++      KG+    WP      
Sbjct: 447 GTKFTESFRI----KHNRGEILWTGCSGFGSERWLIALL----AQKGLNPENWPKKFFEY 498

Query: 343 -SVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
            S +PF  S+  +        ++   KI +   
Sbjct: 499 VSASPFPRSIRTVTYPKTNEGKELLNKIISAFR 531


>gi|261749646|ref|YP_003257332.1| glycyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497739|gb|ACX84189.1| glycyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 487

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 129/358 (36%), Gaps = 52/358 (14%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M ++ +      +   T + + ++ F     S + +PF   QI   FR+E+  R  + R 
Sbjct: 174 MFKIKEEKGDLFLRPETAQGIFSNFFSVKKSSRKKIPFGIAQIGKSFRNEIMARQFLFRM 233

Query: 153 REFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           REF   +   F L  E  K + Y K       +   LG K   +R         L+H   
Sbjct: 234 REFEQMEMQFFILPEEEMKWYEYWKKIRLKWHLELNLGDKKYQLRNH-----DHLAHYAS 288

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD             +F  P    + + I S      +    ++           ++ 
Sbjct: 289 AGADI------------EFHFPFGFKEIEGIHSRRDFDLKRHEFFSKKKLRVFRDNLENY 336

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 ++ G++    F+    YS  +       +GK+  V                   
Sbjct: 337 IPYVIETSLGLD---RFFLAI-YSSSLKKEKLD-NGKERVV------------------- 372

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                 +  P  ++P K ++  +   D    +  +KI+  L K+   + +D   E IG  
Sbjct: 373 ------LKIPPCLSPVKAAIFPLVLKD-GLPEIAKKIFQNL-KIDYRLVYD-QKESIGKL 423

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +   D +G P+   +    ++D  V +++R + +++ + ++E I+    + +  R +L
Sbjct: 424 YRRQDAIGTPICFTIDYDTINDDTVTMRYRDSMLQKRVPIKE-ISKIIEKETGMRKIL 480


>gi|219666079|ref|YP_002456514.1| seryl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|254783022|sp|B8FXX3|SYS_DESHD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219536339|gb|ACL18078.1| seryl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 421

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 12/207 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    + + + +  +  G +E+  P +   +  + +G+   + ++  ++A   
Sbjct: 164 FYKGLGAKLERALISFMLDRHSAKGYVEVLPPYMVHRNSMIGTGQLPKFEEDAFKVA--- 220

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T+++R  I     LP         FR E     R   G++R  +F 
Sbjct: 221 GTDYFLIPTAEVPVTNMYREEILEAEQLPIHHCAYSACFRAEAGSAGRDTRGLIRQHQFN 280

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F   PE S      +      I   L L    M   +G +G   +     E  +
Sbjct: 281 KVELVKFAF-PENSYEELESLTRDAESILQELELPYRVMALSTGDLGFTSAKTYDLEVWL 339

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF 239
            +     ++    +F DF     N  F
Sbjct: 340 PSFNTYREISSCSNFEDFQARRANIRF 366


>gi|238928176|ref|ZP_04659936.1| serine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238884136|gb|EEQ47774.1| serine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 423

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    + +G+   + ++M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNEASMIGTGQLPKFAEDMFKL--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 221 EGLDYYLVPTAEVPTTNYHRDEILDAEQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F +TPE S      M  +   +   L L    ++  +G +    +     E  
Sbjct: 281 NKVELIKF-VTPETSWDELESMVAAAEDVLKILELPYRVIQLCTGDMSFTSAKTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           + A     ++    +  D+     N  +        +   
Sbjct: 340 MPAQDKYREISSCSNCTDYQARRANIKYRPARGAKPVFLH 379


>gi|148381006|ref|YP_001255547.1| histidyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153931156|ref|YP_001385377.1| histidyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153937842|ref|YP_001388784.1| histidyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|166227960|sp|A7FY04|SYH_CLOB1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227961|sp|A5I6D6|SYH_CLOBH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|148290490|emb|CAL84618.1| histidyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152927200|gb|ABS32700.1| histidyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152933756|gb|ABS39255.1| histidine--tRNA ligase [Clostridium botulinum A str. Hall]
 gi|322807356|emb|CBZ04930.1| histidyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 415

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 123/432 (28%), Gaps = 49/432 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    LP        +    R      G  E+  P  +  +L+        D   K
Sbjct: 4   QAPKGTKDLLPTESYKWQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F          P   Y      R E        R
Sbjct: 64  EMYTFEDKAGRSITLKPEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLS 207
            R+        F             +    + I+  LG++   +      IG        
Sbjct: 121 LRQHHQFGIEIFGAKDASVDAE---VISIPVGIYKELGVE--GVELNINSIGCPKCRKTY 175

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E +    +      CS     F           + +   IV+          D   +  
Sbjct: 176 NEALKKYLSKNYDKLCSTCKTRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECKDHF 235

Query: 268 ---------FDSLPENKRVSARGIEVG--HIFYF---------GTKYSLPMSATFKGADG 307
                     D   +      RG++     +F F         G +Y        +   G
Sbjct: 236 EALKSYLDVLDIKYKVDPFIVRGLDYYSKTVFEFIIDDITICAGGRY----DYLIEEIGG 291

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    +G+G  R++  +       K I  P+      + L      D+   +   K
Sbjct: 292 PSMPAV--GFGMGIERLLLTL-----QEKAIEIPEE---AYVDLYLGNMGDKAKLEV-LK 340

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L         D MG+ + +Q   A+ +G    +++G + ++  KV +K    G + 
Sbjct: 341 LAKELRDRHIKCEIDHMGKSVKAQMKYANRIGAKYSMVLGEEELNTGKVSLKRMEDGQQI 400

Query: 428 DMSLEEVINYAS 439
           ++ ++E+     
Sbjct: 401 EVDIKEIDTLIK 412


>gi|15640779|ref|NP_230409.1| histidyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591433|ref|ZP_01678711.1| histidyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121726005|ref|ZP_01679304.1| histidyl-tRNA synthetase [Vibrio cholerae V52]
 gi|147674318|ref|YP_001216245.1| histidyl-tRNA synthetase [Vibrio cholerae O395]
 gi|153216233|ref|ZP_01950333.1| histidyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|153800575|ref|ZP_01955161.1| histidyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|153817271|ref|ZP_01969938.1| histidyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153822725|ref|ZP_01975392.1| histidyl-tRNA synthetase [Vibrio cholerae B33]
 gi|153824620|ref|ZP_01977287.1| histidyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|153828282|ref|ZP_01980949.1| histidyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|227080939|ref|YP_002809490.1| histidyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229505626|ref|ZP_04395136.1| histidyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510702|ref|ZP_04400181.1| histidyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229513101|ref|ZP_04402567.1| histidyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229517824|ref|ZP_04407268.1| histidyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229523418|ref|ZP_04412825.1| histidyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229530110|ref|ZP_04419500.1| histidyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229608644|ref|YP_002879292.1| histidyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254847897|ref|ZP_05237247.1| histidyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255744566|ref|ZP_05418517.1| histidyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262192499|ref|ZP_06050650.1| histidyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|297581159|ref|ZP_06943083.1| histidyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|298499107|ref|ZP_07008914.1| histidyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|31077006|sp|Q9KTX0|SYH_VIBCH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|172047440|sp|A5F3G1|SYH_VIBC3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782354|sp|C3LT13|SYH_VIBCM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|9655206|gb|AAF93925.1| histidyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546710|gb|EAX56887.1| histidyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121631487|gb|EAX63857.1| histidyl-tRNA synthetase [Vibrio cholerae V52]
 gi|124114378|gb|EAY33198.1| histidyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124123864|gb|EAY42607.1| histidyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|126512187|gb|EAZ74781.1| histidyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126519756|gb|EAZ76979.1| histidyl-tRNA synthetase [Vibrio cholerae B33]
 gi|146316201|gb|ABQ20740.1| histidyl-tRNA synthetase [Vibrio cholerae O395]
 gi|148876236|gb|EDL74371.1| histidyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|149741838|gb|EDM55867.1| histidyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|227008827|gb|ACP05039.1| histidyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|227012584|gb|ACP08794.1| histidyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229333884|gb|EEN99370.1| histidyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229339781|gb|EEO04796.1| histidyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229344539|gb|EEO09513.1| histidyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229349994|gb|EEO14948.1| histidyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229350667|gb|EEO15608.1| histidyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229357849|gb|EEO22766.1| histidyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229371299|gb|ACQ61722.1| histidyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254843602|gb|EET22016.1| histidyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255737597|gb|EET92991.1| histidyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262031658|gb|EEY50245.1| histidyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|297534475|gb|EFH73312.1| histidyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297543440|gb|EFH79490.1| histidyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 422

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 150/439 (34%), Gaps = 54/439 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  +++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+ +  +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGI-AQHVRLELNSIGSLEARA 175

Query: 210 FIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A     + + +    D            + S+N D   I+     +  +    +  
Sbjct: 176 NYRTALIDYLEQYQNVLDEDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQ 235

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--------- 305
                 +L D+        +   RG++     +F + T+ SL    T  G          
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQ 294

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        + +G  R+V  ++E+  +             +   + +    +    A
Sbjct: 295 LGGKPTPAV--GFAMGLERLVL-MMETLGNTD---------VRRSVDVYMVTAGEGTMMA 342

Query: 365 CEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K+  +L +   G  V     G     QF  AD +G  + +++G   V+   V +K   
Sbjct: 343 GMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLA 402

Query: 423 TGIREDMSLEEVINYASHR 441
            G +  ++  EV    +H 
Sbjct: 403 GGEQNTVAQAEVAKLLAHL 421


>gi|219130142|ref|XP_002185231.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403410|gb|EEC43363.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 503

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 138/433 (31%), Gaps = 38/433 (8%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            KG   + P   +    +    R      G  E   P L+S  L+V     +   + +  
Sbjct: 81  PKGTRDFYPQDMRLRTWLFDHWRAVAKSFGFSEYDAPVLESEALYVRKAGEEVTTQ-LYN 139

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ D+A+   P     +  +  +  K    +P  +Y I   +R E R   G  R RE 
Sbjct: 140 FVDKGDRAVALRPEMTPSLARMVMAQ-KGGLPMPLKWYSIPQCWRYE-RMTRG--RRREH 195

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVL 213
              +   + +    ++     +  + +  F  +GL  + + ++  S  + G++     + 
Sbjct: 196 FQWNMDVWGVAGPEAEAE---LMAAMVTFFENVGLTAEDVGIKVNSRLVIGEVLDSLGIP 252

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-- 271
            +               PI +   D +++    S+VE+        S    +        
Sbjct: 253 EEKFAVTCVLVDKLEKVPIEAIQGDLEELGLDRSVVEKLLDVLTNKSLDALKGTLGEDSQ 312

Query: 272 ------PENKRVSARGIEVGHIFYF----GTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                        A  I+   +F      G  Y   +        G+   +  G      
Sbjct: 313 AVKELSQFMTLCEAYNIQNWILFDASVVRGLAYYTGIVFEAFDRRGELRAIAGGGRYDKL 372

Query: 322 MRVVA-------------AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +                 AVI      + ++           +  +    Q        +
Sbjct: 373 LETFGGVQTPAAGFGFGDAVIVELLKERDVLPSFESTGVDTVVFAMN---QDLYAPAVGV 429

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            + L K G  V     G+++   F  AD +G    V+VG+    + +V IK    G ++ 
Sbjct: 430 ASVLRKAGQSVDVVLEGKKLKWVFKHADRIGAKYCVVVGADEYLNGEVAIKDLSGGAQKS 489

Query: 429 MSLEEVINYASHR 441
           + ++++ N+ S  
Sbjct: 490 VKIDDLSNWVSDE 502


>gi|169794926|ref|YP_001712719.1| seryl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|169147853|emb|CAM85716.1| seryl-tRNA synthetase ; also charges selenocystein tRNA with serine
           [Acinetobacter baumannii AYE]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 135 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDADRL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 312 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 370


>gi|170754518|ref|YP_001782690.1| histidyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|229558648|sp|B1IMD8|SYH_CLOBK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169119730|gb|ACA43566.1| histidyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 415

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 123/432 (28%), Gaps = 49/432 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    LP        +    R      G  E+  P  +  +L+        D   K
Sbjct: 4   QAPKGTKDLLPTESYKWQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F          P   Y      R E        R
Sbjct: 64  EMYTFEDKAGRSITLKPEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLS 207
            R+        F             +    + I+  LG++   +      IG        
Sbjct: 121 LRQHHQFGIEIFGAKDASVDAE---VISIPVGIYKELGVE--GVELNINSIGCPKCRKTY 175

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E +    +      CS     F           + +   IV+          D   +  
Sbjct: 176 NEALKKYLSKNYDKLCSTCKTRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECKDHF 235

Query: 268 ---------FDSLPENKRVSARGIEVG--HIFYF---------GTKYSLPMSATFKGADG 307
                     D   +      RG++     +F F         G +Y        +   G
Sbjct: 236 ESLKSYLDVLDIKYKVDPFIVRGLDYYSKTVFEFIIDDITICAGGRY----DYLIEEIGG 291

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    +G+G  R++  +       K I  P+      + L      D+   +   K
Sbjct: 292 PSMPAV--GFGMGIERLLLTL-----QEKAIEIPEE---AYVDLYLGNMGDKAKLEV-LK 340

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L         D MG+ + +Q   A+ +G    +++G + ++  KV +K    G + 
Sbjct: 341 LAKELRDRHIKCEIDHMGKSVKAQMKYANRIGAKYSMVLGEEELNTGKVSLKRMEDGKQI 400

Query: 428 DMSLEEVINYAS 439
           ++ ++E+     
Sbjct: 401 EVDIKEIDTLIK 412


>gi|15602123|ref|NP_245195.1| seryl-tRNA synthetase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431879|sp|P57836|SYS_PASMU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|12720487|gb|AAK02342.1| SerS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 428

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 13/206 (6%)

Query: 37  KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ  K    ++  + +    + G  E  VP L +      +G+   +G+++
Sbjct: 159 SGSRFVVMKGQIAKLHRALSQFMLDLHTEQHGYTETYVPYLVNHATLYGTGQLPKFGEDL 218

Query: 94  LRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFG 148
                   ++     PT E  +T++ R  I    +LP         FR E     R   G
Sbjct: 219 FHTNALEGEQPYALIPTAEVPVTNLVRDEILDEADLPLKMTAHTPCFRSEAGSYGRDTRG 278

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----G 204
           ++R  +F   +       PE S     ++     ++   L L    +   +G +G     
Sbjct: 279 LIRMHQFDKVELVQIVA-PETSMQVLEELTGQAEKVLQLLELPYRKVLLCTGDMGFGSCK 337

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF 230
               E  + A     ++    +  DF
Sbjct: 338 TYDLEVWLPAQNTYREISSCSNMWDF 363


>gi|256375404|ref|YP_003099064.1| glycyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255919707|gb|ACU35218.1| glycyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 461

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 149/443 (33%), Gaps = 57/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSADLWVESGRYDSYGKEMLRL 96
           + + PLG +  DN+           G  ++       +   ++W  SG  +++   ++  
Sbjct: 33  WDYGPLGVELKDNIKRQWWNFM-VRGREDVVGLDSSVILPREVWTASGHVEAFVDPLVEC 91

Query: 97  ADRNDKAMIYGPTHE--EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR- 153
              + +      + E  E           S  ++P      + ++  E R   G++++  
Sbjct: 92  NSCHKRFRQDTLSEEYAERTGKDVAEGDVS--DVPCPNCGTRGQY-TEPRMFNGLLKTHL 148

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             +  +     L PE ++     +F ++L +               G IG    +E    
Sbjct: 149 GPVETEEGLHYLRPETAQ----GIFTNFLNVQTT---SRRKPPFGIGQIGKSFRNEITPG 201

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                T+ F   +   F  P  +  +                 +A +  H E       +
Sbjct: 202 NFIFRTREFEQMEMEFFVEPGTDEQWHQYWIDERTRWYTELGISADNLRHYEH---PAEK 258

Query: 274 NKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYV 312
               + R +++ + F FG             T + L   +   G D           +  
Sbjct: 259 LSHYAKRTVDIEYRFRFGGQEWGELEGIANRTDFDLTTHSNHSGVDLSYFDQATNSRYRP 318

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +     G  R + A +  ++                 +     +AP K +++ + + + 
Sbjct: 319 FVIEPAAGVGRPMMAFLLEAYTEDEAPNAKGGVDKRVVLRLDRRLAPVKAAVLPL-SRNA 377

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + + A L K   +V +DD G  IG ++   D +G P  V V    ++D  V ++
Sbjct: 378 DLSPKAKDLAAALRKHW-NVEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLTDHAVTVR 435

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  +E +S++++  Y + R 
Sbjct: 436 ERDTMSQERVSMDQIEGYLAARL 458


>gi|224538465|ref|ZP_03679004.1| hypothetical protein BACCELL_03359 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519933|gb|EEF89038.1| hypothetical protein BACCELL_03359 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 272

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 106/317 (33%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  + G +E+  PT+ +A     +G+      +M  
Sbjct: 12  GAGFPVYKGKGAQLQRALINFFLDEARKAGYLEIMPPTVVNAASGYGTGQLPDKEGQMYH 71

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 72  CEVDD---LYLIPTAEVPVTNIYRDVILEEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE S+ S+ +M      +  +L L    +R      GGD+S    
Sbjct: 129 LHEFSKVELVRID-KPEHSRQSHKEMLDHVEGLLQKLELPYRILRLC----GGDMS---- 179

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF + SE                                    
Sbjct: 180 ----------FTAALCFDFEVYSEAQKRW------------------------------- 198

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                     +EV  +  F T  +  +   ++  + K      +    +   R+VAA++E
Sbjct: 199 ----------LEVSSVSNFDTYQANRLKCRYRSGEKKTELCHTLNGSALALPRIVAALLE 248

Query: 331 SSHDGKGIIWPDSVAPF 347
           ++   +GI  P ++ P+
Sbjct: 249 NNQTPEGIRIPKALVPY 265


>gi|56459772|ref|YP_155053.1| seryl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|67461667|sp|Q5R0B0|SYS_IDILO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56178782|gb|AAV81504.1| Seryl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 430

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 89/254 (35%), Gaps = 20/254 (7%)

Query: 17  DAEIASHKLMLRT---GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAI 67
           D E+  H  +      GM  + +    G    +  G  A     +   + +   +  G +
Sbjct: 133 DFEVKDHVDLGEALAKGMDFETAAKLTGARFVVMRGGIARMHRALTQFMLDLHTDEHGYL 192

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSY 125
           E  VP + + D    +G+   +GK++  +     +   M   PT E  +T+++R  I   
Sbjct: 193 ETYVPYMVNQDSLYGTGQLPKFGKDLFHIEGESQDQIPMSLIPTAEVPLTNLYRDEIADE 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP  F      FR E     R   G++R  +F   +   + + PE S  +  ++    
Sbjct: 253 EELPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFDKVE-LVWLVKPEQSMDALEQLTGHA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +  +L L    +   +G +G   +     E  + A     ++    +  DF       
Sbjct: 312 ETVLQKLELPYRKVLLCTGDMGFGAAKTYDLEVWLPAQEAYREISSCSNMQDFQARRMQA 371

Query: 238 DFDDIISLNSIVEQ 251
            F    +    +  
Sbjct: 372 RFRRKGAKKPELMH 385


>gi|294141063|ref|YP_003557041.1| seryl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293327532|dbj|BAJ02263.1| seryl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 428

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 19/230 (8%)

Query: 19  EIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMS 70
           E+  H  +     G+  +++    G    +  GQ A     +   + +   +  G  E  
Sbjct: 135 EVKDHVDLGEALGGLDFKNAVKLTGSRFIIMKGQIARMHRALAQFMLDLHTDEHGYTEAY 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           VP L + D    +G+   +G+++          + +   PT E  +T++ R  I     L
Sbjct: 195 VPLLVNEDSLFGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLARDTIIDEDEL 254

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   G++R  +F   +     + PE S  + + +      +
Sbjct: 255 PVKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQM-VKPEDSMAALDALTGHAETV 313

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             +L L    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 314 LQKLDLPYRTVILCTGDMGFGASKTFDIEVWLPAQNTFREISSCSNMQDF 363


>gi|126696727|ref|YP_001091613.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166222760|sp|A3PE37|SYS_PROM0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|126543770|gb|ABO18012.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G +E+  P L +++    SG+   +  E  +     +  +
Sbjct: 172 NGARLERALINFMLDMHTKNGYLELMPPALVNSESLTGSGQLPKFSNESFKC---FNDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ +   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNELIDPKKLPIKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ K+      I  +L L    +   +G +G   S     E  + +  
Sbjct: 289 YWF-CDPSKSLEAHKKITSDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|319787313|ref|YP_004146788.1| seryl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465825|gb|ADV27557.1| seryl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP + +AD    +G+   + +++    +  +    
Sbjct: 170 ARLHRALAQFMLDLHTGEHGYEETNVPVIVNADSLRGTGQLPKFEEDLFS-TELGEHRRY 228

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 229 LIPTSEVPLTNIVRDGILDGDKLPLRMTAHSMCFRSEAGSGGRDVRGMIRQHQFEKVELV 288

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           S    PE S   + +M      +  +LGL    M   +G +G         E  + +   
Sbjct: 289 SI-TRPEESDAEHERMTRCAEVVLEKLGLPYRRMLLCTGDMGFSARKTYDLEVWLPSQHT 347

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 348 YREISSCSNCGDF 360


>gi|309805189|ref|ZP_07699241.1| histidine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|312871836|ref|ZP_07731924.1| histidine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872922|ref|ZP_07732982.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312874202|ref|ZP_07734236.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|315653587|ref|ZP_07906507.1| histidine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|308165423|gb|EFO67654.1| histidine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|311090272|gb|EFQ48682.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311091444|gb|EFQ49828.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092778|gb|EFQ51134.1| histidine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|315488949|gb|EFU78591.1| histidine--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 428

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 138/437 (31%), Gaps = 56/437 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      D V  I +    +    E+  P  ++ +++  S     D   K
Sbjct: 4   QKPKGTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFGV 149
           EM    D+ D+ +   P     +   +  +       P     + I   FR E RP+ G 
Sbjct: 64  EMYDFMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +        V    +   LG+K   +   S          
Sbjct: 122 -RQREFHQIGVESFGSDNALADVET---IVLAHDLLSTLGIKKYELHINSLGNEAVRTAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    PI   LS +      T   ++  SKD  D    S      D +  +   + 
Sbjct: 178 RQALVDYFTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLD-DESKKN 236

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARG------------IEVGHIFYFGTKYSLPMS 299
           +       S++  + + D           G             +       G +Y+    
Sbjct: 237 FEFIIKTLSELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNH--- 293

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +  DG         +GIG  R++  +   +        P+ +    I        ++
Sbjct: 294 -LVEEFDGPKTPAV--GFGIGEERLMLVLKAQN--------PELLTDSNIDFYITNIGEE 342

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E I   L K G  V +D   +++ +QF  AD       + +G + + ++ + IK
Sbjct: 343 TITKTVE-IARELRKQGLKVQYDVEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIK 401

Query: 420 HRLTGIREDMSLEEVIN 436
               G     +++E+ N
Sbjct: 402 RLSDGKSYAFNMDEIAN 418


>gi|262305717|gb|ACY45451.1| glu- + pro-tRNA synthetase [Cryptocellus centralis]
          Length = 134

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  + K   YV   S+GI   R +  V+    D  
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVFEHPETKQKEYVHQNSWGIT-TRTIGVVVMIHSDNM 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHDQVCR-DACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A +++ +I       +   ++    + C ++   +S  G     D       
Sbjct: 74  GLVLPPKIACYQVVIIPCGISVSLTEEEEKTLIEKCRELENEISAAGIRCNGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|217316863|gb|ACK37837.1| putative glutamyl-prolyl tRNA synthetase [Polycheles typhlops]
          Length = 134

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  + K   +    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFDIIFEDPETKQKQFCYQNSWGLT-TRSIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVCR-----DACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++   I A           +AC K+ A L+  G     D   
Sbjct: 74  GLVLPPRVASVQAIIMPVGITAKSTEQEKLNLLEACNKLAADLNADGVRTRCDVRD 129


>gi|169632602|ref|YP_001706338.1| seryl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|260557291|ref|ZP_05829507.1| seryl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|169151394|emb|CAP00119.1| seryl-tRNA synthetase ; also charges selenocystein tRNA with serine
           [Acinetobacter baumannii]
 gi|260409397|gb|EEX02699.1| seryl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 135 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDADRL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G   +     E  V +     ++    +  DF        +
Sbjct: 312 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 370


>gi|124022316|ref|YP_001016623.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166222762|sp|A2C798|SYS_PROM3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123962602|gb|ABM77358.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L +      SG+   + +E  R A 
Sbjct: 166 FVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNTASLTGSGQLPKFAEESFRCA- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 225 --EDDLWLTPTAEVPVTSLHRDEIIPADQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           F   + Y F + P+ S+ ++ ++      +   L L    +   +G +G   S
Sbjct: 283 FNKVELYWF-VHPDHSQAAHAQITADAEAVLQALELPYRVIELCTGDLGFSSS 334


>gi|91069868|gb|ABE10799.1| seryl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           ASNC1363]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +     G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGARLERALINFMLDMHTSNGYLELMPPALVNSESLTGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNDIIDPKKLPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P  S  ++ K+ +    I  +L L    +   +G +G   S     E  + +  
Sbjct: 289 YWF-CEPSKSIEAHKKITLDAESILKKLNLPYRLIDICTGDLGFSSSRTYDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|53712299|ref|YP_098291.1| seryl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60680477|ref|YP_210621.1| seryl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|253563663|ref|ZP_04841120.1| seryl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265762490|ref|ZP_06091058.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|52215164|dbj|BAD47757.1| seryl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60491911|emb|CAH06670.1| putative seryl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|251947439|gb|EES87721.1| seryl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263255098|gb|EEZ26444.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301162011|emb|CBW21555.1| putative seryl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 424

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 105/317 (33%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  ++G  E+  PT+ +A     +G+      +M  
Sbjct: 164 GAGFPVYKGKGAQLQRALINFFLDEARKSGYTEIMPPTVVNAASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE S+ S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSRQSHQEMLDHVEGLLQKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF + SE                                    
Sbjct: 332 ----------FTAALCFDFEVYSEAQKRW------------------------------- 350

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                     +EV  +  F T  +  +   ++  + K      +    +   R+VAA++E
Sbjct: 351 ----------LEVSSVSNFDTYQANRLKCRYRSGEKKTELCHTLNGSALALPRIVAALLE 400

Query: 331 SSHDGKGIIWPDSVAPF 347
           +    +GI  P ++ P+
Sbjct: 401 NHQTPEGIRIPKALVPY 417


>gi|296393871|ref|YP_003658755.1| histidyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181018|gb|ADG97924.1| histidyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 429

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 135/450 (30%), Gaps = 53/450 (11%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
             S KL        Q  KG+  +LP           ++ E     G   + +P  +   L
Sbjct: 6   KKSQKL--------QAPKGVPDYLPPESARFVAAKRVLAEAAELAGYRPVELPVFEDTAL 57

Query: 80  WVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +V       D  GKEM    D+  +++   P     +      H      LP   +    
Sbjct: 58  YVRGVGASTDIVGKEMYTFPDQGGRSLTLRPEWTAGVVRAVVEHGLDRGQLPVKLWYAGP 117

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E RP+ G  R R+F      +  +           +    LR   RLGL    +  
Sbjct: 118 CFRYE-RPQSG--RYRQFQQMGVEAIGVDDPALDAEAVAVAEEGLR---RLGLGGYRLEI 171

Query: 198 ES------GPIGGDLSHEFIVLADTGETQVFCSKDFM----DFPIPSENTDFDDIISLNS 247
            S       P   +    F+   D  E     ++       D   P       D   L  
Sbjct: 172 NSLGDEACRPEYRERLLSFLRGLDLDEATRQRAERNPLRVLDDKRPEVKAQLVDAPLLVD 231

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKR-------VSARGIEVGHIFYFGTKYSLPMSA 300
            +      +  T   H   L  +   + +        +    E  H    G + +L    
Sbjct: 232 HLSDSAKEHFETVLEHLRGLGVAYSLSPKLVRGLDYYTKTTFEFVHTG-LGAQSALGGGG 290

Query: 301 TFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + G  AD     +    + IG  R + A+               + P     + +    
Sbjct: 291 HYDGLVADLGGQPLPGVGFSIGLERTLLALAAE-----------GIPPQDSGSVPVFGVA 339

Query: 359 --QVCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                +     +   L + G  V     D   +       AD  G    +I+G   ++  
Sbjct: 340 LGAEAKGRMTSLAGALREAGIGVDLAYGDRALKAA--MRAADRSGARFVLIIGEAELASE 397

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + ++K   +G +  + L +V++  + R + 
Sbjct: 398 QAQLKDMRSGEQSCVPLPDVVSEMASRLAE 427


>gi|153951229|ref|YP_001398568.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|166228635|sp|A7H4Y8|SYS_CAMJD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|152938675|gb|ABS43416.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 411

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPITNLYSGEILTSETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-TKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|322417644|ref|YP_004196867.1| seryl-tRNA synthetase [Geobacter sp. M18]
 gi|320124031|gb|ADW11591.1| seryl-tRNA synthetase [Geobacter sp. M18]
          Length = 422

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   +    IEM  P + + D    +G+   + +++  L       
Sbjct: 167 LGARLERALINFMLDLHIDEHKYIEMLPPFMVNRDSMTGTGQLPKFEEDLFHL---EGVD 223

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+I R  I    +LP ++      FR E     +   G++R  +F   +
Sbjct: 224 FFLIPTAEVPVTNIHRGEILKGSDLPISYCAYTPCFRKEAGSYGKDTRGLIRQHQFNKVE 283

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              F   PE S     K+      +  RL +    +   +G IG   +  F + 
Sbjct: 284 LVKFTA-PEESYQELQKLLGHAEEVLRRLQIPYRVVELCTGDIGFSAAKTFDIE 336


>gi|254383603|ref|ZP_04998953.1| histidyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342498|gb|EDX23464.1| histidyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 419

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 135/443 (30%), Gaps = 59/443 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  +P        V   I      +G   +  P  +  DL+        D   
Sbjct: 4   FKAPKGTYDLIPPYSAKYLAVRDAISGPLRLSGYGYVETPGFEDVDLFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRDELRPRFG 148
           KEM  L  +    +   P                ++   LP   +     +R E RP+ G
Sbjct: 64  KEMYTLTTKGGANLALRPEG-TASVLRAALEANLHKAGGLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL++  +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRTLGLRNFRILLNSLGDQECRPV 176

Query: 203 ----------GGDLSHEFIVLADTGETQVFCSKDFMDFP----IPSENTDFDDIISLNSI 248
                     G DL  E +  A+    +V   K           P       D       
Sbjct: 177 YREALQTFLRGLDLDEETVRRAEINPLRVLDDKRPEVQKQLAGAPMLRAYLCDACKAYHE 236

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-- 306
             +     A  +   +EKL   L    R      E  H    G++ ++     + G    
Sbjct: 237 EVRALITAAGVTFEDDEKLVRGLDYYTRT---TFEFVHDG-LGSQSAVGGGGRYDGLSEM 292

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R V A+     +G  +  P + + F ++L          +   
Sbjct: 293 IGGPALPSVG-WALGVDRTVLAL---EAEGVELDIPAATSVFAVAL-------GEAKPVL 341

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   L K G            G +        A+  G    V+ G + +++  V++K 
Sbjct: 342 FGLVTELRKSGIAADI-----SYGGKGLKGAMKDANRSGARFAVVAGDRDLAEGVVQLKD 396

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             +G +  ++L EV      R +
Sbjct: 397 MESGEQSPVALAEVAEVLRARLA 419


>gi|325279156|ref|YP_004251698.1| seryl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324310965|gb|ADY31518.1| seryl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 424

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 73/224 (32%), Gaps = 10/224 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +  LG +    +     +E  + G  E+  P + +AD    +G+      +M  
Sbjct: 163 GAGFPLYKGLGARLQRALINFFLDENIKAGYQEVQPPLMVNADSGYGTGQLPDKDGQMYY 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +   N+  +   PT E  +T+I+R  I     LP         FR E     +   G+ R
Sbjct: 223 V---NEDNLYLIPTAEVPVTNIYRDVILDGDQLPVKNTAYSACFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
             +F   +       PE S  +   M      +  +LGL    +R   G I     L+ +
Sbjct: 280 LHQFDKVEIVQI-TRPEVSYEALEGMVKHVESLLIKLGLPYRIVRLCGGDISFTSALTFD 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
           F V +   E  +  S         +           +       
Sbjct: 339 FEVYSKAQEKWLEVSSVSNFEEFQANRLKLRFKDKGDKKTTTCH 382


>gi|300743942|ref|ZP_07072962.1| glycine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380303|gb|EFJ76866.1| glycine--tRNA ligase [Rothia dentocariosa M567]
          Length = 459

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 72/509 (14%), Positives = 145/509 (28%), Gaps = 133/509 (26%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            L      A+      + + G I+  S+  + + PLG +  +N+     +   R+ A  +
Sbjct: 6   TLDNVIALAKRRG--FVFQAGEIYGGSRSAWDYGPLGVELKENIRQQWWQRFVRSRADMV 63

Query: 70  SV--PTLQSADLWVESGRYDSYG------------------------------KEM---- 93
            +    +    +W  SG   ++                               + M    
Sbjct: 64  GLDSSVILPRPVWEASGHVATFMDPLVECLSCHRRQRQDHLIEAFEAKKGRAPENMGEVV 123

Query: 94  ---------------LR--------LADRNDKAMIYGPTHEEVMTDIFRSHI-KSYRNLP 129
                                      D  +      P   + +   F + +  + +  P
Sbjct: 124 CPNCGTRGEWTEPQNFSGLLKTYLGPVDNEEGLHFLRPETAQGIFVNFNNVVTAARKRPP 183

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F   QI   FR+E+ P   + R+REF   +   F    E      +K F +         
Sbjct: 184 FGIGQIGKAFRNEITPGNFIFRTREFEQMEIEYFVHPDEA-----DKHFDA--------- 229

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                                           +    +  F     N +      +    
Sbjct: 230 --------------------------------WVEDCWNWFVDLGINPENMRRFDVPEDD 257

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADG 307
               +      +           E   V+ R       +  G   ++S      F  A G
Sbjct: 258 RAHYSAGTIDIEYRFGFQGGEWGELMGVANR-----TDYDLGVHNEHSNAKLEYFDQASG 312

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINI 354
           + +   +     G  R + A +  ++                 +     +AP K +++ +
Sbjct: 313 ERYVPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDKRVVLKLDPRLAPVKAAVLPL 372

Query: 355 KAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               +   +   K+ A L      D  +D+ G  IG ++   D +G P  + V    + D
Sbjct: 373 SKKPE-LSEPAHKLAADLCGAWNID--YDEAGA-IGRRYRRQDEIGTPFCITVDFDTLED 428

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
             V I+ R T  +E ++L++V  Y + R 
Sbjct: 429 QAVTIRERDTMSQERVALDQVKAYLAARL 457


>gi|148545036|ref|YP_001272406.1| histidyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184154370|ref|YP_001842711.1| histidyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364184|ref|ZP_03848281.1| histidyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325683387|ref|ZP_08162903.1| histidine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|148532070|gb|ABQ84069.1| histidyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183225714|dbj|BAG26231.1| histidyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070823|gb|EEI09149.1| histidyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324977737|gb|EGC14688.1| histidine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 433

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 134/439 (30%), Gaps = 43/439 (9%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--S 83
           M +  + +Q  +G    LP   +    V  I R      G  E+  P  +  +++     
Sbjct: 1   MAKAKVNYQRPRGTVDILPGESELWQKVENIARNTFAEFGYSEIRTPMFEDYNVFARNVG 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRD 141
              D   K+M    D+ ++ +   P     +   +  +       P     Y +   FR 
Sbjct: 61  DTSDIVEKQMYDFHDKGERHVALRPEGTAGVVRAYVQNKLFGPEYPKPYKVYYMGPMFRY 120

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-- 199
           E RP  G  R R+F      + +            + +  L  F RLG+  + +   +  
Sbjct: 121 E-RPESG--RQRQFTQIGCEALNSESPQIDAE---VILEALMFFKRLGITELRVAINTLG 174

Query: 200 ----------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                            P   +LS +          +V  SKD  D  I +      D +
Sbjct: 175 DKETRDNYRQALIDYLKPHYDELSDDSKERLYKNPLRVLDSKDETDKKIVANAPSILDSL 234

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSAT 301
           S  S     +              F+          RG++     IF   +  S      
Sbjct: 235 SGYSAKYFDS-------VKKILDKFNVDYVVDNEMVRGLDYYTHTIFEIMSN-SPVFGGG 286

Query: 302 FKGADGKDHYVQMGSYGIGAMR--VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +    G   Y  + S   G     +   +              S  P     +      +
Sbjct: 287 YTTICGGGRYNGLISQIGGPDEGGIGYGIGVERLLLLLREENKSFIPQPGLDLFFVTVGE 346

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI- 418
              +   ++   L  +G  V  D  G ++G+Q   A         ++G K +   ++E+ 
Sbjct: 347 KADNFAFELMEPLRTMGIKVDKDYQGLKVGTQIKEASRRNSRYFAVIGDKEILSKEIELN 406

Query: 419 --KHRLTGIREDMSLEEVI 435
             +   +   + +S++E++
Sbjct: 407 FTESDSSEEGKKVSIDELL 425


>gi|327438151|dbj|BAK14516.1| seryl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 430

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 11/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +   ++ G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYKGLGARLERALLNFMMDLHSDQHGYTEMLPPQIVNRDSLTGTGQLPKFEEDVFKLVRE 224

Query: 100 NDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            D+      PT E  +T+ +R  I S   LP  F      FR E     R   G++R  +
Sbjct: 225 EDEMDYYLIPTAEVPVTNYYRDEILSADMLPQAFSAFSANFRSEAGSAGRDTRGLIRQHQ 284

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEF 210
           F   +   F + PE S      +     ++   LGL    ++  +  +G         E 
Sbjct: 285 FNKVELVRF-VKPEESYEQLEILTGHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEV 343

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDF 239
            + A     ++    +F DF     N  F
Sbjct: 344 WIPAQNMYREISSCSNFEDFQARRANIRF 372


>gi|153940828|ref|YP_001392333.1| histidyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|166227962|sp|A7GHS3|SYH_CLOBL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|152936724|gb|ABS42222.1| histidine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320326|gb|ADG00704.1| histidine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 415

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 124/432 (28%), Gaps = 49/432 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    LP        +    R      G  E+  P  +  +L+        D   K
Sbjct: 4   QAPKGTKDLLPTESYKWQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F          P   Y      R E        R
Sbjct: 64  EMYTFEDKAGRSITLKPEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLS 207
            R+        F             +    + I+  LG++   +      IG        
Sbjct: 121 LRQHHQFGIEIFGAKDASVDAE---VISIPVGIYKELGVE--GVELNINSIGCPKCRKTY 175

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E +    +      CS     F           + +   IV+          D   +  
Sbjct: 176 NEALKKYLSKNYDKLCSTCKTRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECKDHF 235

Query: 268 ---------FDSLPENKRVSARGIEVG--HIFYF---------GTKYSLPMSATFKGADG 307
                     D   +      RG++     +F F         G +Y        +   G
Sbjct: 236 ESLKSYLDVLDIKYKVDPFIVRGLDYYSKTVFEFIIDDITICAGGRY----DYLIEEIGG 291

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    +G+G  R++  +       K I  P+  A   + L NI       +    K
Sbjct: 292 PSMPAV--GFGMGIERLLLTL-----QEKAIEIPEE-AYVDLYLGNIGDK---AKLEVLK 340

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L         D MG+ + +Q   A+ +G    +++G + ++  KV +K    G + 
Sbjct: 341 LAKELRDRHIKCEIDHMGKSVKAQMKYANRIGAKYSMVLGEEELNTGKVSLKRMEDGKQI 400

Query: 428 DMSLEEVINYAS 439
           ++ ++E+     
Sbjct: 401 EVDIKEIDTLIK 412


>gi|82749786|ref|YP_415527.1| seryl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123548272|sp|Q2YUR2|SYS_STAAB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|82655317|emb|CAI79697.1| seryl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 428

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    + MDF     N  F
Sbjct: 346 DYKEISSCSNCMDFQARRANIRF 368


>gi|300769636|ref|ZP_07079520.1| serine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300492789|gb|EFK27973.1| serine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 434

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G      V + + +    + G  E+  P L +A     +G++  + +++  + 
Sbjct: 174 FVYYKDAGALLERAVYSFMLDLHTQKQGYHEIIPPYLVNAQTMYGTGQFPKFKEDVYTVE 233

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 M   PT E  +T+ + + I S   LP  F  +   +R E     R   G++R  
Sbjct: 234 SSG---MTLIPTAEVPLTNYYANEILSEDQLPTYFTAMTPCYRSEAGSAGRDTRGLIRMH 290

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   +   PE S     K+  +   +   LGL    ++  +G  G   +  + V 
Sbjct: 291 QFHKVEMVKY-CKPENSYDELEKLTDNAEEVLRELGLAYHVIKLSTGDTGFSSAKTYDVE 349


>gi|289809607|ref|ZP_06540236.1| hypothetical protein Salmonellaentericaenterica_36347 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 70

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+IG +     L   P  ++ G K V   KV ++ R       + + +VI        
Sbjct: 2   RNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDVIEKLQQEIR 61

Query: 444 NN 445
           + 
Sbjct: 62  SR 63


>gi|157813068|gb|ABV81279.1| putative bifunctional aminoacyl-tRNA synthetase [Cypridopsis vidua]
          Length = 134

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F   + G+  +V   S+G+   R +  ++    D  
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFDIVFDDPETGEXRHVYQNSWGLT-TRTIGVMVMVHADNT 73

Query: 337 GIIWPDSVAPFKISLINIKA-------HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA +++ ++             Q   D C+    RL K G  V  D       
Sbjct: 74  GLVLPPRVAAYQVVVVPCGVGVNTKPEESQALXDLCKAYCDRLEKAGVRVHADLRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|78186477|ref|YP_374520.1| seryl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|123583337|sp|Q3B5A4|SYS_PELLD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78166379|gb|ABB23477.1| seryl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 430

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 10/202 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   ++  G +    +   + +      G  E+  P L + D    +G++  +     
Sbjct: 164 GAGFPVYVGKGARLERALINFMLDRHTEEHGYTEVFPPFLVNRDSLRGTGQWPKFAD--- 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           ++    +  +   PT E  +T++ R  + S   LP ++      FR E     +   G +
Sbjct: 221 QVYHMEEDELYAIPTAEVPVTNLHRDEMLSAEALPISYAAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R  +F   +   F   PE S  +   +      I   L +    +   SG I  + +  +
Sbjct: 281 RVHQFNKVEMVKF-TRPEESYAALETIRGHAEAILCALEIPYRVLLLCSGDISANAAKCY 339

Query: 211 IVL-ADTGETQVFCSKDFMDFP 231
            +      E +   +    +F 
Sbjct: 340 DIEVWSPAERKYLEASSCSNFE 361


>gi|50364832|ref|YP_053257.1| seryl-tRNA synthetase [Mesoplasma florum L1]
 gi|67461751|sp|Q6F2A0|SYS_MESFL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|50363388|gb|AAT75373.1| seryl-tRNA synthetase [Mesoplasma florum L1]
          Length = 422

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 13/214 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG K + +++ I+       G  E++VP L +      +G+   + ++      
Sbjct: 165 FVVYTGLGAKLVRSLSNILLNLHTSKGYTEITVPLLVNPQAMYGTGQLPKFKEDAYITT- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                    PT E  +T++    I     LP  +      FR E     R   G++R  +
Sbjct: 224 ---NDQYLIPTGEVPLTNLHAGEILDLNQLPIHYTTYSQCFRQEAGSAGRDTKGLIRLHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        E S+     M      +     L    +   +G +G   S     E 
Sbjct: 281 FNKVELVKI-TNQESSEAELQAMVNDAEAVLQLFNLPYRVVELCTGDVGFSSSKTYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                    ++    +  DF   +  T + D   
Sbjct: 340 WFPEQNKYREISSCSNCTDFQARNMQTRYRDANG 373


>gi|220910001|ref|YP_002485312.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|254783020|sp|B8HL86|SYS_CYAP4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219866612|gb|ACL46951.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 424

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G +E+  P L ++     +G+   + +E  +        + 
Sbjct: 173 GAALERALIQFMLDRHTSAGYLEVLPPFLINSTSLTATGQLPKFAEESFKC---EADDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  NLP         FR E     R   G++R  +F   +  
Sbjct: 230 LAPTAEVPVTNLYRDEILTAENLPIYHCAYTPCFRREAGSYGRDTRGLIRLHQFNKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S+  +  +      I   L L    +   +G +G   +     E  + +   
Sbjct: 290 KL-VHPSTSEQEHEALVRDASAILEALQLPYRVIELCTGDLGFSAAKCYDLEVWLPSAGC 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +F DF
Sbjct: 349 YREISSCSNFYDF 361


>gi|170760205|ref|YP_001788375.1| histidyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|229558649|sp|B1L097|SYH_CLOBM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169407194|gb|ACA55605.1| histidine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 415

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 123/432 (28%), Gaps = 49/432 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    LP        +    R      G  E+  P  +  +L+        D   K
Sbjct: 4   QAPKGTKDLLPTESYKWQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F          P   Y      R E        R
Sbjct: 64  EMYTFEDKAGRSITLKPEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLS 207
            R+        F             +    + I+  LG++   +      IG        
Sbjct: 121 LRQHHQFGIEIFGAKDASVDAE---VISIPVGIYKELGVE--GVELNINSIGCPKCRKTY 175

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E +    +      CS     F           + +   IV+          D   +  
Sbjct: 176 NEALKKYLSKNYDKLCSTCKTRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECRDHF 235

Query: 268 ---------FDSLPENKRVSARGIEVG--HIFYF---------GTKYSLPMSATFKGADG 307
                     D   +      RG++     +F F         G +Y        +   G
Sbjct: 236 EALKSYLDVLDIKYKVDPFIVRGLDYYSKTVFEFIIDDITICAGGRY----DYLIEEIGG 291

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    +G+G  R++  +       K I  P+      + L      D+   +   K
Sbjct: 292 PSMPAV--GFGMGIERLLLTL-----QEKAIEIPEE---AYVDLYLGNMGDKAKLEV-LK 340

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L         D MG+ + +Q   A+ +G    +++G + ++  KV +K    G + 
Sbjct: 341 LAKELRDRHIKCEIDHMGKSVKAQMKYANKIGAKYSMVLGEEELNTGKVALKRMEDGQQI 400

Query: 428 DMSLEEVINYAS 439
           ++ ++E+     
Sbjct: 401 EVDIKEIDTLIK 412


>gi|317122078|ref|YP_004102081.1| histidyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315592058|gb|ADU51354.1| histidyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 453

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 141/426 (33%), Gaps = 52/426 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G Y   P        + A IR+   R G  E+  P +++ +L+  +     D   K
Sbjct: 5   QRPRGTYDVTPQEAPRWQALEARIRDVAARFGFGELRTPVIEARELFQRTVGETTDIVQK 64

Query: 92  EMLRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM  L     D+ ++  P         +  +       P   + IQ  FR E RP+ G  
Sbjct: 65  EMYVLTPPGSDRQLVLRPEGTAAAVRAYLENGLHNGPQPVKLFYIQPMFRHE-RPQAG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----------- 199
           R R+ +      F      +      + V+   +F  LGL+ + +   S           
Sbjct: 122 RYRQHVQFGVEIFGAGEATADAEIIALAVT---LFAELGLEGLEVHLNSIGCPVCRPRYR 178

Query: 200 -------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                   P   +L  +     +T   ++   K   D P  +      D +  ++  + +
Sbjct: 179 QALLEYYRPRAAELCSDCRARLETNPLRLLDCKVPADQPHKAGAPRTVDYL-CDACRDHF 237

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGA---DGK 308
               AA + +      DS         RG++      F  KY  L    T  G    DG 
Sbjct: 238 DQLQAALAALGIAYRLDS------GLVRGLDYYTRTVFEIKYGGLGAQDTVCGGGRYDGL 291

Query: 309 DH-----YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                        +G+G  R++  +            P +  P    +       QV R 
Sbjct: 292 IELLGGPPTPGVGFGMGLERLLLTL------EALGRVPGAARPLHAFVAVTG---QVPRA 342

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L + G  V  D +G  + +Q   A  L     VI+G +  +  +  ++H  +
Sbjct: 343 RVLALVQDLRRAGLAVDMDHVGRSLKAQLRAAARLPVRYAVILGDEEWAAGQATVRHLES 402

Query: 424 GIREDM 429
           G +  +
Sbjct: 403 GAQRRV 408


>gi|258423229|ref|ZP_05686121.1| seryl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257846558|gb|EEV70580.1| seryl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 428

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|269103274|ref|ZP_06155971.1| histidyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163172|gb|EEZ41668.1| histidyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 422

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 146/433 (33%), Gaps = 40/433 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +++  +  G  E+ +P ++S  L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGTVKQVISSYGYNEVRMPIVESTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + I   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIQNGLLYNQEQRLWYIGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+    +  E   IG   +  
Sbjct: 121 -RYRQFHQFGVEVFGLNGPDIDAELIMM---TARLWRELGIHE-HVTLELNSIGSLEARA 175

Query: 210 FIVLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A             E             + ++N +  +I+     + ++    +  
Sbjct: 176 EYRTALIAFLEQHMEVLDEDAKRRMYTNPLRVLDTKNPEIQNILGDAPKLSEYLDQDSRE 235

Query: 260 SDVHNEKLFDSLPENKR---VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                 +L D+     +      RG++     +F + T  SL    T  G  G  +   +
Sbjct: 236 HFAGLCELLDAAGIKYQVNERLVRGLDYYNRTVFEWVTD-SLGAQGTVCG--GGRYDGLV 292

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYAR 371
              G      V   +      + ++  +++   ++     + +    +    A  K+   
Sbjct: 293 EQLGGKVTPAVGFAMGL---ERLVLLMETLEQTEVRRSVDVYMVTAGEGTLAAGMKLAEV 349

Query: 372 LSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L        V     G     QF  AD +G  + +++G   ++++ V +K    G +  M
Sbjct: 350 LRSQIPDLRVMTHFGGGNFKKQFKRADNVGAVVALVLGENEIAENTVVVKDLRGGEQITM 409

Query: 430 SLEEVINYASHRF 442
           + ++V    +   
Sbjct: 410 NQDDVAAKLAELI 422


>gi|169628792|ref|YP_001702441.1| glycyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|169240759|emb|CAM61787.1| Glycyl-TRNA synthetase (GlyS) [Mycobacterium abscessus]
          Length = 472

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/388 (12%), Positives = 112/388 (28%), Gaps = 88/388 (22%)

Query: 84  GRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           G++       M+       +        +   T + +  +       S +  PF   QI 
Sbjct: 143 GQWTEPRDFNMMLKTYLGPIETEEGLHYLRPETAQGIFINFKNVVTTSRQKPPFGIGQIG 202

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ P   + R+REF   +   F                               + 
Sbjct: 203 KSFRNEITPGNFIFRTREFEQMEMEFF-------------------------------VE 231

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             + P      H++ +                 +     + +   +           +  
Sbjct: 232 PSTAPEW----HKYWI-----------DTRLQWYVDLGIDPENLRLYDHPKEKLSHYSDG 276

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GK 308
               +       +   E + ++ R           T + L   A   G D         +
Sbjct: 277 TVDIEYKFGFSGNPWGELEGIANR-----------TDFDLSTHAKHSGEDLSYYDQAEDR 325

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIK 355
            +   +     G  R   A +  ++                 +     +AP K++++ + 
Sbjct: 326 RYTPYVIEPAAGLTRSFMAFLVDAYHEDEAPNAKGGVDTRTVLRLDPRLAPVKVAVLPL- 384

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + +       + + A L +   +V +DD G  IG ++   D +G P  V V    + D  
Sbjct: 385 SRNADLSPRAKALAAELRQSW-NVDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDDS 442

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R    ++ + +  V ++ +    
Sbjct: 443 VTVRDRDEMTQQRIPIGGVADHLAKTLK 470


>gi|94263583|ref|ZP_01287393.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
 gi|93456003|gb|EAT06154.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
          Length = 427

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 13/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              +    + + + +    + G  E+  P L ++     +G+   + +++ R+       
Sbjct: 171 FAARLERALISFMLDLHTEKHGYTEVLPPFLVNSASMTATGQLPKFAEDLFRI---EGAD 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+I R    + + LP  +      FR E     R   G++R  +F   +
Sbjct: 228 LWLIPTAEVPVTNIHRDETLAEKELPIYYCAYTPCFRSEAGSYGRDTKGLIRQHQFDKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLAD 215
              F  TPE S     K+     ++   L L    +   SG +G         E  + A 
Sbjct: 288 LVKF-TTPETSDAELEKLLSDAEKVLQLLELPHRVVTLCSGDLGFSARKTYDIEVWMPAQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++    +F DF
Sbjct: 347 NCYREISSCSNFGDF 361


>gi|319899194|ref|YP_004159287.1| Seryl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319403158|emb|CBI76717.1| Seryl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   +  G  E+SVP L   ++   + +   + +++ R  D          T
Sbjct: 176 RALGQFMLDLHVDEHGYQEISVPLLVRDEIVYGAAQLPKFSEDLFRTTD----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  + ++  S I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLVNLVNSEILDVTELPLRFTSLTPCFRSEAGAAGRDTRGMLRQHQFRKVELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           T E S     +M      +   LGL    +   +G +G
Sbjct: 291 TEEQSLDELERMTECAENVLKHLGLPFRTIVLSTGDMG 328


>gi|313498111|gb|ADR59477.1| SerS [Pseudomonas putida BIRD-1]
          Length = 426

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P +  A     +G+   + +++ ++    +    
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEHYTPYMVQAPALQGTGQLPKFEEDLFKITREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I   + LP         FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNLVAGEILDAKQLPLKLVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  R+   L L    +   +G +G         E  V +   
Sbjct: 290 QV-VEPAKSMEALEGLTANAERVLQLLELPYRVLALCTGDMGFGAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|312884305|ref|ZP_07744014.1| histidyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368078|gb|EFP95621.1| histidyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 422

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 131/444 (29%), Gaps = 62/444 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWHKLENAVKNVVSVYGYSEVRMPIVEMTQLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG        
Sbjct: 122 YRQFTQCGVEVFGLNGPDVDAELIMM---TARLWRELGID-KHVRLELNSIGS-----LQ 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS- 270
             AD  E  V   +  +D                    +                  D  
Sbjct: 173 ARADYREALVGFLEQHIDVLDEDCKRRMHTNPLRVLDTKNAEIQAILGDAPKLSDYLDEE 232

Query: 271 -----LPENKRVSARGIEVGHIFYF--GTKY---------SLPMSAT------------F 302
                    + + + GIE         G  Y         +  + A              
Sbjct: 233 SKQHFQGLCELLDSVGIEYSVNQRLVRGLDYYNRTVFEWITESLGAQGTICGGGRYDGLV 292

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAV--IESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   GK        + +G  R+V  +  +E     +G           + +  + A +  
Sbjct: 293 EQLGGKSTPAV--GFAMGLERLVLMLETLELDSVRRG-----------VDVYVVTAGEGT 339

Query: 361 CRDACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              A  K+   L +   G  V     G     QF  AD +G  + +++G   VS+  V +
Sbjct: 340 LL-AGMKLAEALREEVPGLRVMSHFGGGNFKKQFKRADKVGAAVALVLGEDEVSEGTVVL 398

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           K  + G +      +++   +   
Sbjct: 399 KDLIGGTQNTYPQAQIVTKLAELV 422


>gi|282857769|ref|ZP_06266978.1| serine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282584439|gb|EFB89798.1| serine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 428

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 79/216 (36%), Gaps = 13/216 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +    + G  E +VP + +++  + +G+   + +++ ++       
Sbjct: 168 LGARLERAIMNYMLDMHTQKHGYTEFNVPVMVNSESMLGTGQLPKFAEDLYKV---EKDD 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T++    + S   LP  +      FR E     R   G+MR  +F   +
Sbjct: 225 LWMIPTAEVPLTNMHNGEMLSESELPKYYTAYTPCFRRESGSYGRDVRGIMRLHQFDKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 TPE S     K+  +   +   LGL    +   +G +G   +     E  + + 
Sbjct: 285 MVKI-CTPESSWDELEKLTGNAEEVLQGLGLPYRVIVLCTGDMGFGSAKTYDVEVWLPSQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               ++    + +DF     NT +            
Sbjct: 344 NCYREISSCSNCVDFQARRMNTRYRPADGGKPRYVH 379


>gi|255994652|ref|ZP_05427787.1| serine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993365|gb|EEU03454.1| serine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 421

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 10/190 (5%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
           R G I         +  LG +   +V   +       G  E+  P + +      +G+  
Sbjct: 154 RAGKI--TGSRFTVYKGLGARLERSVINFMLNTHVDNGYTEVMTPFMVNRRAMTGTGQLP 211

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL---- 143
            + +++  +   N K     PT E  +T++    I +   +P  +      FR E     
Sbjct: 212 KFEEDLFAV---NAKDYFLIPTAEVPVTNLHSGEILNVEEVPKNYVAYTACFRKEAGAAG 268

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           R   G++R  +F   +     + PE S    +K+  +   I  +L L    ++  +G +G
Sbjct: 269 RDTKGLIRQHQFNKVELVKL-VQPENSYEELDKLLANAESILKKLELPYRVVKLCTGDLG 327

Query: 204 GDLSHEFIVL 213
              +  + + 
Sbjct: 328 FSAAMTYDIE 337


>gi|229496630|ref|ZP_04390344.1| glycyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316527|gb|EEN82446.1| glycyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 518

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 70/508 (13%), Positives = 155/508 (30%), Gaps = 97/508 (19%)

Query: 19  EIASHKLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV- 71
           +I SH      G +   S+       +Y +   G +  +N+ A   +         + + 
Sbjct: 9   KIVSHCK--EYGFVFPSSEIYDGLGAVYDYGQYGVELKNNIKAFWWKSMTLLHENVVGID 66

Query: 72  -PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGP---------------------- 108
                   +W  SG  D++      L D  D    Y                        
Sbjct: 67  SAIFMHPKIWQASGHVDAFND---PLIDNKDSKKRYRADILIEDYLAKLDEKIDKEVAKA 123

Query: 109 ---THEEVMTDIFRS---HIKSY-RNLPFTFYQIQLKFRDE-----------------LR 144
                E     ++R     ++ Y      T  +      D                  + 
Sbjct: 124 AKRFGESFDAALYRETNPRVQGYLAEKNETLERFSKALNDNDLEAIRTIIIDKKIVCPIS 183

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFH--RLGLKSIPMR 196
                   R+F +  A     T +G+   Y +      +FV+YL +    R+ L     +
Sbjct: 184 GTCNWTEVRQFNLMFATEMGSTADGASKIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQ 243

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW---- 252
                IG    +E +        + F   +   F  P E   + +      +        
Sbjct: 244 -----IGKAFRNEIVARQFIFRMREFEQMEMQFFVAPGEEMKWFEYWKKTRMAFHKSLGL 298

Query: 253 -TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----- 306
               Y            ++  + +     G +     +  T Y L     F G       
Sbjct: 299 GDNKYRYHDHEKLAHYANAATDIEYEMPFGFKEVEGIHSRTNYDLSRHEEFSGKKLRYFD 358

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSH----DGKG-----IIWPDSVAPFKISLINI 354
              G+ +   +    IG  R+  +++  ++       G     +  P ++AP K++++ +
Sbjct: 359 PQTGESYIPYVVETSIGVDRLFLSLMCGAYCEEPTENGEMRTVLRLPAALAPIKLAVLPL 418

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D    +   ++   L +      +D+  + IG ++   D +G P  + + ++ + D+
Sbjct: 419 VRKD-GLDEKAREVVREL-RFDFTCQYDE-KDSIGKRYRRQDAIGTPYCITIDNQTMEDN 475

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V I+ R T  +  +++ ++    + + 
Sbjct: 476 TVTIRERDTMEQHRVAITDLRKEIAQKV 503


>gi|146307407|ref|YP_001187872.1| seryl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166223271|sp|A4XUX4|SYS_PSEMY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|145575608|gb|ABP85140.1| seryl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 426

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A     +G+   + +++ ++   +   + 
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEAYTPYLVQAPALQGTGQLPKFEEDLFKIRREDQADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   M     R+   L L    +   +G +G         E  V +   
Sbjct: 290 QI-VEPSKSFEALEGMTAHAERVLQLLELPYRKLALCTGDMGFSAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|269122820|ref|YP_003305397.1| seryl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314146|gb|ACZ00520.1| seryl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 422

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 13/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +    +   + +      G  E+  P L   D+ + +G+   + ++M ++     + 
Sbjct: 168 MGARLERALINFMLDVHTEEHGFTEILTPQLAKKDIMIGTGQLPKFEEDMYKIQ---GED 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+++   I     LP  F      FR E     R   G++R  +F   +
Sbjct: 225 LYLIPTAEVTLTNMYAGEILKEEELPKHFCGFTACFRQEAGSGGRDLKGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                + P+ S      M     +I  +L L    +   +G +G   +     E  V + 
Sbjct: 285 MVKI-VHPDKSYEELEHMTNCGEKILQKLNLPYRVLSLCTGDMGFSAAKTYDIEVWVPSQ 343

Query: 216 TGETQVFCSKDFMDF 230
               ++    +  DF
Sbjct: 344 NKYREISSCSNTEDF 358


>gi|152969482|ref|YP_001334591.1| seryl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238893954|ref|YP_002918688.1| seryl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|166222736|sp|A6T6Z0|SYS_KLEP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|150954331|gb|ABR76361.1| seryl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238546270|dbj|BAH62621.1| seryl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 430

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHGGLDFAAAVKLTGSRFVVMKGQLARLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKVALCTGDMGFSACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|152989408|ref|YP_001347960.1| seryl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166223270|sp|A6V4H5|SYS_PSEA7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|150964566|gb|ABR86591.1| seryl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 426

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS----KGIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D E+  H  L  R G +   +     G    L  G   +    +   +        G  E
Sbjct: 133 DFEVKDHVALGERHGWLDFETAAKLSGARFALMRGPIARLHRALAQFMINLHTAEHGYEE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P L  A     +G+   + +++ ++    +  +   PT E  +T+I    I   R L
Sbjct: 193 AYTPYLVQAPALQGTGQLPKFEEDLFKIGRDGEADLYLIPTAEVSLTNIVSGQILDARQL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     R   G++R  +F   +     + P  S  +   +  +  R+
Sbjct: 253 PLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMVQI-VDPATSYEALEGLTANAERV 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
              L L    +   +G +G   +     E  V +     ++    +  DF
Sbjct: 312 LQLLELPYRVLALCTGDMGFGATKTYDLEVWVPSQDKYREISSCSNCGDF 361


>gi|294673444|ref|YP_003574060.1| serine--tRNA ligase [Prevotella ruminicola 23]
 gi|294473781|gb|ADE83170.1| serine--tRNA ligase [Prevotella ruminicola 23]
          Length = 439

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 105/318 (33%), Gaps = 69/318 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++  G +    +     +E  ++G  E+  PT+ +A     +G+      +M  
Sbjct: 178 GAGFPVYIGKGARLQRALINFFLDEARKSGYTEIMPPTVVNAASGYGTGQLPDKEGQMYH 237

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +       PT E  +T+I+R  I   ++LP         FR E     +   G+ R
Sbjct: 238 CEVDD---FYLIPTAEVPVTNIYRDVILDEKDLPIKNCAYTECFRREAGSYGKDVRGLNR 294

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +       GGD S    
Sbjct: 295 LHEFSKIEIVRID-KPEHSKESHKEMLEHVEGLLKKLELPYRILLLC----GGDQS---- 345

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + SE                                    
Sbjct: 346 ----------FTSAICYDFEVYSEAQGRW------------------------------- 364

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--RVVAAVI 329
                     +EV  +  F T  +  +   ++ ++ K   +     G      R+VAA++
Sbjct: 365 ----------LEVSSVSNFDTYQANRLKCRYRNSETKKTELCHTLNGSALALPRIVAALL 414

Query: 330 ESSHDGKGIIWPDSVAPF 347
           E++    GI  P ++ P+
Sbjct: 415 ENNQTENGIKIPAALVPY 432


>gi|312142431|ref|YP_003993877.1| seryl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311903082|gb|ADQ13523.1| seryl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 422

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 11/191 (5%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
            ++   + +         E+  P + +AD    +G+   + K+M +L           PT
Sbjct: 174 RSLVNFMLDYHTAEHDYEEVFPPFIANADSMTGTGQLPKFKKDMFKL---EGLDYYLIPT 230

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+++R  I   + LP         FR E     R   G++R  +F   +   F +
Sbjct: 231 AEVPVTNMYRDQIMEPQELPKYLCAYSACFRAEAGAHGRDTRGIIRQHQFNKVEMVKF-V 289

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFC 223
            P+ S     K+      I  +LGL    +   +G        +++  V     ET    
Sbjct: 290 KPDDSYQELEKITADAEDILQQLGLPYRVVTLCTGDLTFSSAKTYDLEVWMPAYETYREI 349

Query: 224 SKDFMDFPIPS 234
           S         +
Sbjct: 350 SSCSNFEDFQA 360


>gi|307701747|ref|ZP_07638761.1| glycine--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|307613005|gb|EFN92260.1| glycine--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 461

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 71/480 (14%), Positives = 154/480 (32%), Gaps = 72/480 (15%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            L++    A+      +   G I+  ++  + + PLG +  +N+         R+    +
Sbjct: 4   TLEQVISLAKRRG--FVYPCGEIYGGTRAAWDYGPLGVELKENIKKAWWNYMVRSREDVV 61

Query: 70  SV--PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +    +    +W  SG   ++   ++     + +        E+ + + +         
Sbjct: 62  GLDSSVILPPKVWEASGHLKAFTDPLIECTSCHKRYR------EDDLQEKYAEKHGIDNP 115

Query: 128 LPFTFYQIQLKFRD------ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVS 180
                  +  +         E R   G++++    + D      L PE ++  +      
Sbjct: 116 DTVDMAVVACENCGVKGQWTEPRAFSGLLKTYLGPVDDESGLHFLRPETAQGIFINFANV 175

Query: 181 YLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                 R   G+         G IG    +E         T+ F   +   F  P  + +
Sbjct: 176 MNSARMRPPFGI---------GQIGKSFRNEITPGNFIFRTREFEQMELEFFVEPGTDEE 226

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFG----- 291
           +      +         Y       +   F   P+ K    S R +++ + F F      
Sbjct: 227 WHQYWIDHRFAW-----YTDLGISADNLRFYEHPKEKLSHYSKRTVDIEYAFGFEGSKWG 281

Query: 292 --------TKYSLPMSAT-------FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDG 335
                   T Y L + A        +      + +   +     G  R + A +  ++  
Sbjct: 282 ELEGIANRTDYDLSVHAEASGQKLDYYDQAKDERWVPYVIEPSAGLTRSLMAFLIEAYTE 341

Query: 336 KG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                          +     +AP K+++  + +  +   D    I A L K   +V +D
Sbjct: 342 DEAPNTKGGVDKRTVLRLDPRLAPVKVAVFPL-SKKETLPDLARGIAADLRKFW-NVDYD 399

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D G  +G ++   D +G P  V V    VSD  V ++ R +  +E + +E ++ Y   + 
Sbjct: 400 DAGA-VGRRYRRQDEIGTPYCVTVDFDSVSDHAVTVRERDSMTQERIPMEGLVAYLRDKL 458


>gi|167034601|ref|YP_001669832.1| seryl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083580|sp|B0KLW8|SYS_PSEPG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166861089|gb|ABY99496.1| seryl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 426

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A     +G+   + +++ ++    +    
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEHYTPYLVQAPALQGTGQLPKFEEDLFKITREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I   + LP         FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNLVAGEILDAKQLPLKLVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  R+   L L    +   +G +G         E  V +   
Sbjct: 290 QV-VEPAKSMEALEGLTANAERVLQLLELPYRVLALCTGDMGFGAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|15603876|ref|NP_246950.1| histidyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431889|sp|P57988|SYH_PASMU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|12722453|gb|AAK04095.1| HisS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 423

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 144/427 (33%), Gaps = 47/427 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        V   +R      G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWVEGKVRSVLQNYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y       + +   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNQE-QRLWYMGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG---- 217
            F +           + +   R++  LG+    +  +   IG   + +    A       
Sbjct: 131 VFGIPNPEIDAE---LIMLTARLWKELGIAE-HVTLQLNSIGSLEARKNYRSALVAFLQQ 186

Query: 218 ------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E +    +      + ++N    ++++    +  +    +         L D++
Sbjct: 187 HVDLLSEEEKERLEKNPLRILDTKNQALQEVLNDAPKLLAYLDDDSREHFAQLCALLDAV 246

Query: 272 PENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGI 319
                      RG++     +F       G + ++     + G       H      + +
Sbjct: 247 GIQYEVNPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATTGVGFAM 306

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVG 376
           G  R+V  V E +     I  P +     + +  +   +     A    E +   L +  
Sbjct: 307 GLERLVLLVQEVNQS---IRLPSA-----VDIYVVYQGEGTTLAAFQLAETLRTELPQ-- 356

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVI 435
             V     G     QF  AD  G  L +++G   V + +V +KH L G  ++ ++L++++
Sbjct: 357 LRVMTHCSGGNFKKQFKRADKSGATLALVIGESEVQNQQVVVKHLLGGAEQQTLALDDIV 416

Query: 436 NYASHRF 442
           +Y  + F
Sbjct: 417 DYIKNNF 423


>gi|296126531|ref|YP_003633783.1| seryl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296018347|gb|ADG71584.1| seryl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 426

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G      +   + ++     G  E   P L ++     +G+   + +++ +  D  D A
Sbjct: 170 KGAALERALINFMLKKHTSEHGYTEYVPPMLVNSRTMTGTGQLPKFEEDLFKTTD--DPA 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+I+R  I     LP         FR E     R   G++R  +F   +
Sbjct: 228 LYLIPTAEVPLTNIYREEIIPENMLPIYATAYTPCFRSEAGSYGRDMRGLIRQHQFDKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   + SK  + KM      I   L L    +   SG IG         E  + + 
Sbjct: 288 LVKVCA-ADKSKEEHEKMLKDAESILQALELPYRVVVLSSGDIGNAAYKTFDIEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++    +  D+
Sbjct: 347 NTYREISSVSNCWDY 361


>gi|110598390|ref|ZP_01386663.1| seryl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110339999|gb|EAT58501.1| seryl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 429

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 74/213 (34%), Gaps = 13/213 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G  +++  G +    +   + +      G  E+  P   + +    +G++  +     
Sbjct: 164 GAGFPAYMGKGARLERALINFMLDMHTENHGYTEVFPPFFVNRESLRGTGQWPKFAD--- 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           ++    +  +   PT E  +T++ R  +     LP ++      FR E     +   G +
Sbjct: 221 QVYHMQEDDLYAIPTAEVPVTNLHRGEMLDNGALPISYAAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +   F   PE S  +  ++  +   I   L +    +   SG I  + +   
Sbjct: 281 RVHQFNKVEMVKF-TRPEESYEALEQIRRNAEAILIALKIPYRVLLLCSGDISANAAKCY 339

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             E    A+    +     +F D+     N  F
Sbjct: 340 DIEVWSPAEQKYLEASSCSNFEDYQARRANIRF 372


>gi|319776729|ref|YP_004139217.1| Seryl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|317451320|emb|CBY87558.1| Seryl-tRNA synthetase [Haemophilus influenzae F3047]
          Length = 429

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|227879060|ref|ZP_03996950.1| histidyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256843054|ref|ZP_05548542.1| histidyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256850294|ref|ZP_05555723.1| histidyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|262046027|ref|ZP_06018991.1| histidyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|293381308|ref|ZP_06627311.1| histidyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|227861355|gb|EEJ68984.1| histidyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256614474|gb|EEU19675.1| histidyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256712931|gb|EEU27923.1| histidyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|260573986|gb|EEX30542.1| histidyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|290922124|gb|EFD99123.1| histidyl-tRNA synthetase [Lactobacillus crispatus 214-1]
          Length = 428

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 142/443 (32%), Gaps = 62/443 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K
Sbjct: 4   QKPKGTVDILPDQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFARSSGDSSEIVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGV 149
           +M    D+  + +   P     +   +         +  PF  + ++  FR E RP+ G 
Sbjct: 64  QMYDFDDKGGRHIALRPEGTASVVRAYVEDKMYAPEVVKPFNVFYMESTFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF  +   S      M      +   LG+K+  +   +          
Sbjct: 122 -RQREFHQIGVESFGSSNPLSDVQTIMMG---HDLLGELGVKNYQLHINTLGNEQVRQDY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMD----FPIPSENTDFDDIISLNS 247
                    P+  +LS +          ++  SKD  D       P      DD    N 
Sbjct: 178 HDALVNYFTPLKDELSEDSQRRLRDNPLRILDSKDERDKKFLPKAPKIREFLDDDSKANF 237

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR-------GIEVGHIFYFGTKYSLPMSA 300
                         V ++ L   L     +            E       G +Y      
Sbjct: 238 EAILKMLDQLGIDYVIDDDLVRGLDYYTGIIFEFMVEDKSLWESATTILGGGRY----DH 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---HDGKGIIWPDSVAPFKISLINIKAH 357
             +  +G         +GIG  R++  + + +    + +GI            + NI   
Sbjct: 294 LVEEFNGPATPAV--GFGIGEERLMLVLKKQNPALFEKRGI---------DFFITNIGDG 342

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             Q   +        L   G +  +D   +++ +QF  AD  G    + +G K +++  +
Sbjct: 343 TAQKAIEIAR----SLRNQGFEADFDVNQKKLKNQFKKADREGAKYVITLGEKELANGVL 398

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            IK    G   D+SLE++ N   
Sbjct: 399 NIKRLADGKTIDLSLEDLNNMTK 421


>gi|295112155|emb|CBL28905.1| seryl-tRNA synthetase [Synergistetes bacterium SGP1]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 78/216 (36%), Gaps = 13/216 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +    + A + +    + G +E+  P +  + +   +G+   + +++ R+AD +   
Sbjct: 168 MGARMERALIAFMLDLHTQKQGYLEVEPPFMVRSAILEGTGQLPKFAEDLYRIADED--- 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T++ R  I    +LP  +      FR E     R   G++R  +F   +
Sbjct: 225 LWLIPTAEVPLTNLHRESILEESDLPLYYTAYTPCFRREAGSAGRDVRGMLRQHQFDKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 TPE S     K+      +   L L    +   SG IG   +     E  + + 
Sbjct: 285 MVKL-CTPETSYDELEKLTADAESVLQALELPYRVVSLCSGDIGFGSTKTYDLEVWLPSQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               ++    +  DF     N  +            
Sbjct: 344 KRYREISSCSNCEDFQARRMNCRYRPASGGKPRFVH 379


>gi|288936304|ref|YP_003440363.1| seryl-tRNA synthetase [Klebsiella variicola At-22]
 gi|290510641|ref|ZP_06550011.1| seryl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|288891013|gb|ADC59331.1| seryl-tRNA synthetase [Klebsiella variicola At-22]
 gi|289777357|gb|EFD85355.1| seryl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 430

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHGGLDFAAAVKLTGSRFVVMKGQLARLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKVALCTGDMGFSACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|260548984|ref|ZP_05823206.1| seryl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260408152|gb|EEX01623.1| seryl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 423

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDADRL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G         E  V +     ++    +  DF        F
Sbjct: 310 LQALGLPYRKILLCGGDMGFGAMKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARF 368


>gi|91226055|ref|ZP_01260982.1| seryl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|269967795|ref|ZP_06181842.1| seryl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|91189496|gb|EAS75773.1| seryl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|269827615|gb|EEZ81902.1| seryl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 435

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGDGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +GK++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLAEKVNDEEPRKLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 255 ISDEADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|148263944|ref|YP_001230650.1| histidyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146397444|gb|ABQ26077.1| histidyl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 415

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 136/429 (31%), Gaps = 43/429 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP   +   ++ A  R      G  E+ VP L+  +L+  S     D   KEM 
Sbjct: 7   KGFNDILPGEVEKWQHIEATARRVFELYGFAEIRVPILEKTELFCRSIGDSTDIVEKEMY 66

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ + ++   P     +   F  H     +     Y +   FR E RP+ G  R R+
Sbjct: 67  SFTDKGENSVTMRPEGTASVMRAFIEHKLYVADAVAKLYYMGPMFRYE-RPQKG--RYRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F    A    +T          M       F  LGL    ++  S            VL 
Sbjct: 124 FHQIGAEVTGVTDPKVDAQVLTML---CHFFAELGLDEPSLQINSLGCPDCRPQYRQVLK 180

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D         +  +++        F+         +      A            +   +
Sbjct: 181 D-------FLRSRLEYLCDDCKRRFETNPLRALDCKSTGCKEATVGAPSVLDHLCASCND 233

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R     H+   GT YS+                ++ +  +G+   VAA     +D
Sbjct: 234 HFTRTRQ----HLEAVGTTYSINARMVRGLDYYTRTTFELVTGLLGSQSAVAA--GGRYD 287

Query: 335 G-----KGIIWP---DSVAPFKISL------------INIKAHDQVCRDACEKIYARLSK 374
           G      G   P    ++   +++L            + I A  +  ++   ++   L K
Sbjct: 288 GLISDLGGPQLPGIGFAMGVERVALLLAEKDFRKRPDLFIAALGESAQNMAFRLMCGLQK 347

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D  G+ + SQ   AD       +I+G   ++     +K+   G + D+ L   
Sbjct: 348 EGAAVEIDYEGKSLKSQMRRADKFNARFTLIIGDDELTKGAAGLKNMDEGSQSDVELN-- 405

Query: 435 INYASHRFS 443
           +   + R  
Sbjct: 406 VGVIAQRIK 414


>gi|307261353|ref|ZP_07543028.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869084|gb|EFN00886.1| Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 435

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    +LP  +      FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMKALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|237742494|ref|ZP_04572975.1| histidyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229430142|gb|EEO40354.1| histidyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 412

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 128/415 (30%), Gaps = 54/415 (13%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G      P  +  +L+    G   D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQKMFENYGYKFAKTPIFEETELFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              M   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASMVRCYLENSIYAKEDVSRFYYNGSMFRYE-RPQAG--RQREFNQIGVEVFGEKSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----------HEFIVLADTGETQ 220
                 M      +  +LG+  + ++  S  +G   S          H    L D  E  
Sbjct: 141 DAEVIAMG---YNLLTKLGVTDLEVKINS--VGSKGSRTVYREKLVEHFKSHLDDMCED- 194

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK------LFDSLPEN 274
             C       P+   +   D                      H E+      +F      
Sbjct: 195 --CRDRINRNPLRLLDCKVDGEKDFYKSAPSIIDYLFEDERKHYEEVKKYLTIFGIKYTE 252

Query: 275 KRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRV 324
                RG++     +F       G++ ++     +       G      +G +  G  R+
Sbjct: 253 DPTLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKEIPAVG-FAAGVERI 311

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  + +               P  I  + I        +   KI   L K    V+ D  
Sbjct: 312 MMLIDDY--------------PRDIPDVYIAWLGDNTVETAMKIAEDLRKNDIKVYVDYS 357

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + + +    AD L     +I+G   ++   V +K   T  ++++ +E++ N   
Sbjct: 358 SKGMKAHMKKADKLETKYCIILGEDELNKGVVLLKDFSTREQKEVKIEDITNQIK 412


>gi|114562295|ref|YP_749808.1| histidyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122300420|sp|Q085U5|SYH_SHEFN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|114333588|gb|ABI70970.1| histidyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 424

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 140/436 (32%), Gaps = 44/436 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V A++R   +  G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKVEAVLRSSVSAFGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNSDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-KSIPMRAES------GPIGG 204
            R+F       + +           + +   R++  LG+ + + +   +           
Sbjct: 122 YRQFHQFGVEVYGIGSADIDAE---VLMLSARLWDLLGIKEHVALELNTLGDPAERAAYR 178

Query: 205 DLSHEFIVLADTGETQ------------VFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           D    F+        +            V  SKD     I  +     D +  +S     
Sbjct: 179 DALIAFLEQHKDKLDEDSQRRMYSNPLRVLDSKDPQVQAILGDAPALMDYLGEDSKTHFS 238

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--H 310
           T      +      +   L        R +        G++ ++     + G  G+    
Sbjct: 239 TLCELLDAVGIQYTINPRLVRGLDYYNRTVFEWVTTSLGSQGTVLAGGRYDGLVGQLGGK 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEK 367
                 + +G  R+V  +               +AP ++ +      +    +A    ++
Sbjct: 299 DTPAVGFAMGLERIVLLLETLELTSD-------IAP-EVDVYVTAMGENCVVEAIKVAQE 350

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIR 426
           +  +L  +           +   Q   AD  G    +I+G   +++++V IK  R    +
Sbjct: 351 LRQQLPTLKVMSHCGGGNFK--KQMKRADKSGAQFALIIGENEIANNQVAIKPLRTNNEQ 408

Query: 427 EDMSLEEVINYASHRF 442
           + ++  E++   +   
Sbjct: 409 QLVTRSELVAKIAELI 424


>gi|256840569|ref|ZP_05546077.1| seryl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256737841|gb|EEU51167.1| seryl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 424

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 105/317 (33%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +  LG +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGLGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSKQSHQEMLNHVEGLLQKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF +                   ++       +V +   FD+ 
Sbjct: 332 ----------FTAALCFDFEV-------------------YSEAQQRWLEVSSVSNFDTY 362

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
             N+                           +  + K      +    +   R+VAA++E
Sbjct: 363 QANRLKCRY----------------------RDENKKTQLCHTLNGSALALPRIVAALLE 400

Query: 331 SSHDGKGIIWPDSVAPF 347
           ++   +GI  P ++ P+
Sbjct: 401 NNQTPEGIRIPKALIPY 417


>gi|37525551|ref|NP_928895.1| seryl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|46577174|sp|Q7N6E7|SYS_PHOLL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|36784979|emb|CAE13897.1| seryl-tRNA synthetase (serine--tRNA ligase) (SERRS) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 429

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 15/217 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   +      + G +E  VP L + +    +G+   +G+++
Sbjct: 158 TGSRFVVMKGQIARLHRALAQFMLNLHTEQHGYLETYVPYLVNHETLYGTGQLPKFGEDL 217

Query: 94  L---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPR 146
                L +  +      PT E  +T++ R  I     LP         FR E     R  
Sbjct: 218 FHTKPLEEEAESHYALIPTAEVPITNLVRGDILDENELPLKMTAHTPCFRSEAGSYGRDT 277

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G++R  +F   +     + P+ S  +   +     ++   L L    +   +G +G   
Sbjct: 278 RGLIRMHQFDKVELVQI-VHPDESMDALEALTGHAEKVLQLLNLPYRKVLLCTGDMGFSA 336

Query: 207 SH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                 E  + A     ++    +  DF        F
Sbjct: 337 CKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQARF 373


>gi|193203271|ref|NP_001122525.1| Prolyl tRNA Synthetase family member (prs-2) [Caenorhabditis
           elegans]
 gi|148472914|emb|CAN86903.1| C. elegans protein T27F6.5d, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 138

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 51/85 (60%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H +++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++++P + +  LW +
Sbjct: 23  HTMLVENGFILPTAKGFYSLLPLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWEK 82

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYG 107
           +GR+++ G EM+R  DR    M   
Sbjct: 83  TGRWEAMGPEMIRFHDRQQNHMCLQ 107


>gi|331269254|ref|YP_004395746.1| histidyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329125804|gb|AEB75749.1| histidyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 420

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 138/441 (31%), Gaps = 51/441 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP+       +   ++   +     E+  P  +  +L+        D 
Sbjct: 4   MAIQAPKGTKDLLPMDSYKWHYIEGKLKGLASEYALREIRTPIFEHTELFERGVGETTDV 63

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++             F  +      LP   +     FR E      
Sbjct: 64  VQKEMYTFKDKGDRSITLKAEGTAPAARAFIENGLFNEALPIKMFYFTPVFRYE---NVQ 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-----------PMRA 197
             R R+        F  +          +    +R F   G+ ++             + 
Sbjct: 121 KGRLRQHHQFGVEVFGSSEASVDAE---IIGLAMRAFKEFGINNLELNINNIGCPECRKK 177

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +  +      ++  L DT +T+    +      +  +N    +I     ++  +     
Sbjct: 178 YNDALREYFKEQYDELCDTCKTRY---ERNPMRLLDCKNKKCKEIGKNAPVILDYVCDDC 234

Query: 258 ATSDVHNEKLFDSLPENKR---VSARGIEVGHIFYF-----------GTKYSLPMSATFK 303
                + +   D+L    +      RG++      F           G +Y    +   +
Sbjct: 235 KNHFENLKTYLDALSIEYKVNPYIVRGLDYYTKTVFEIINNDITVCGGGRY----NGLIE 290

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              GK        +G+G  R++  +         I  P      +   I + +  +  + 
Sbjct: 291 EIGGKPTPAV--GFGMGIERLILTL-----GENSIEIPKP----QEMDIYVGSMGEKGKI 339

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L + G     D M + + +Q   A+ +     +I+G   + + KV +K    
Sbjct: 340 ESFKVVNALREKGIKAECDHMNKSVKAQMKYANKIEALYSMIIGDTEIEEGKVNLKRMED 399

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G + ++SL  +   A+   +N
Sbjct: 400 GQQFEVSLNNLDEIATLVLNN 420


>gi|322514581|ref|ZP_08067614.1| serine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322119520|gb|EFX91607.1| serine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 435

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +    + G +E +VP L + D    +G+   +G+++         D N
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I     LP         FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDEDTLPLRCTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   LGL    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|269960798|ref|ZP_06175169.1| seryl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269834462|gb|EEZ88550.1| seryl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 435

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGDGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +GK++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLVEKVNDEEPRKLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 255 ISDEADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|148240241|ref|YP_001225628.1| seryl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166223303|sp|A5GN16|SYS_SYNPW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|147848780|emb|CAK24331.1| Seryl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  E+  P L ++     SG+   + +E  R AD +   + 
Sbjct: 173 GARLERALINFMLDLHTGKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCADDD---LW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I     LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPLTSLHRDEIIPLDQLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            F + P+ +  ++  +      +   L L    +   +G +G   
Sbjct: 290 WF-VHPDHADEAHAAITADAEAVLQALELPYRVLELCTGDLGFSA 333


>gi|189499787|ref|YP_001959257.1| seryl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|238692278|sp|B3ENZ9|SYS_CHLPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189495228|gb|ACE03776.1| seryl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 427

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 13/225 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   ++  G +    +   + +      G  E+  P + + D    +G++  +  ++ 
Sbjct: 164 GTGFPVYIGKGARLERALLNFMLDCHTENHGYTEVFPPFMVNEDSLRGTGQWPKFADQVY 223

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +   N+  +   PT E  +T++ R+ +     LP ++      FR E     +   G +
Sbjct: 224 YM---NEDNLYAIPTAEVPVTNLHRNEMLKDEELPISYAAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +   F   PE S  +  K+  +   I + L +    +   SG I    +   
Sbjct: 281 RVHQFNKIEMVKF-TRPEESYDALEKILQNAEAILNALRIPYRVLLLCSGDISAGATKCY 339

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             E    A+    +     +F D+     N  F    S       
Sbjct: 340 DIEVWSPAEKKYLEASSCSNFEDYQARRANIRFKPAGSSKPTYVH 384


>gi|300087729|ref|YP_003758251.1| seryl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527462|gb|ADJ25930.1| seryl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 413

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y     G +   ++ ++  +    + G  EM +P +   +    SG    +   + R  
Sbjct: 152 FYVLKNAGARLQRSLISLFLDIHTRQHGYSEMYLPFMVKQESLFGSGNLPKFADNLYR-- 209

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D ND  +   PT E  +T++ R  I +   LP  +      FR E     +   G+ R  
Sbjct: 210 DAND-DLWMVPTAEVPLTNLHRDEILASSELPKHYCAYTACFRREKMSAGKDTRGIKRGH 268

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHEFI 211
           +F   + Y F  TPE S     K+      I   L L    +   +G IG     S++  
Sbjct: 269 QFDKVELYKF-TTPESSNQELEKLLNDAEAIAKALELPYRIVELCTGDIGFASSKSYDIE 327

Query: 212 VLAD-TGET-QVFCSKDFMDFPIPSENTDF 239
           + A   GE  +V    + +DF     N  +
Sbjct: 328 IWAPGVGEWLEVSSCSNCLDFQARRANIRY 357


>gi|262041004|ref|ZP_06014225.1| serine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041639|gb|EEW42689.1| serine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 430

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHGGLDFAAAVKLTGSRFVVMKGQLARLHRALAQFMLDLHIEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKVALCTGDMGFSACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|226328004|ref|ZP_03803522.1| hypothetical protein PROPEN_01895 [Proteus penneri ATCC 35198]
 gi|225203708|gb|EEG86062.1| hypothetical protein PROPEN_01895 [Proteus penneri ATCC 35198]
          Length = 427

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 69/438 (15%), Positives = 144/438 (32%), Gaps = 52/438 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP   +    +   +++     G  E+  P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTRVWQKIENTLKQILAGYGFSEIRTPIVEHTPLFQRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           EM    DR + A      P +          H   Y       + +   FR E RP+ G 
Sbjct: 66  EMYTFTDRGEDAQSLTLRPENTAGCVRAGIEHGLLYNQE-QRLWYLGPMFRYE-RPQKG- 122

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F    A  F L           + +   R +  LG+    +  E   IG   +  
Sbjct: 123 -RYRQFHQLGAEVFGLQGPDIDAE---LIMLTARWWKALGIAE-HVTLELNSIGSLEARA 177

Query: 210 FIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A     +    K   D            + S+N +   +++    +  +    +  
Sbjct: 178 KYREALVAFLEQHVDKLDEDCKRRMYSNPLRVLDSKNPEIQTLLNDAPELFDYLDDESRA 237

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADG 307
                  L D++       +   RG++     +F       G++ ++     + G     
Sbjct: 238 HFDGLCALLDAVGITYRVNQRLVRGLDYYNRTVFEWVTSALGSQGTVCAGGRYDGLVKQL 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----AHDQVCRD 363
             H      + +G  R++  V   +        P+ VA   ++ + +             
Sbjct: 298 GGHPTPAVGFAMGMERMILLVQAVN--------PEFVADTNVADVYLASFGEKSQSAALM 349

Query: 364 ACEKIYARLSKVGCDVFWDDMG--EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             E+I  +L  +       +    +Q+G     AD  G  + +I+G   ++   V +K  
Sbjct: 350 LAEEIRDQLPTLRLMTNHGNGNFKKQLGR----ADKQGAKIALILGEDEINAGTVAVKDL 405

Query: 422 LTGIREDMSLEEVINYAS 439
            +G +  ++  ++    +
Sbjct: 406 RSGEQTIVARNDLAQQLT 423


>gi|152973866|ref|YP_001373383.1| seryl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189083557|sp|A7GJT0|SYS_BACCN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|152022618|gb|ABS20388.1| seryl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 424

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 65/180 (36%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    + + + +      G  E+  P + +      +G+   + ++   + 
Sbjct: 163 FVFYKGAGARLERALISFMLDLHTEEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFLIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I S   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILSAEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEESYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|260911612|ref|ZP_05918197.1| histidine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634318|gb|EEX52423.1| histidine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 456

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 161/461 (34%), Gaps = 68/461 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-------------SADLWVE 82
            KG   + P      + +   I++     G  ++  P+++                L+  
Sbjct: 7   PKGTRDFSPAEMAKRNYIFDTIKDVYALYGYQQIETPSMETLQTLMGKYGEEGDKLLFKI 66

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEE-----VMTDIFRSHIKSYRN---LPFTF 132
             SG +         ++D     +       E      +T  F  ++  +R+   +PF  
Sbjct: 67  LNSGDFIGKLPANEFVSD---NVLKLAANICEKGLRYDLTVPFARYVVMHRDELQMPFKR 123

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           YQIQ  +R + RP+ G  R REF   DA         ++    ++  +   +F + G+ +
Sbjct: 124 YQIQPVWRAD-RPQKG--RYREFYQCDADVVGSDSLLNEVELVQIIDT---VFIKFGI-N 176

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           + ++  +  I   ++          +  V   K               + I+ +++ +  
Sbjct: 177 VQIKLNNRKILAGIAEYIGQPDKIIDITVAIDKLDKIGVEAVNAEMLANGITQDAVGKLQ 236

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIE-----------VGHIFYFGTKYSLPMSAT 301
                + ++V   +          +  +G+E           VG         +L     
Sbjct: 237 PILTMSGTNVEKLETIAQTICTSEIGLKGVEETRFILEKIEAVGLKNELQLDLTLARGLN 296

Query: 302 FKGA---DGKDHYVQMGSY----------GIGAMRVVAAVIESSHDGK-------GIIWP 341
           +      + K   V +GS           GI  M  ++ V  S    +         ++P
Sbjct: 297 YYTGAIFEVKAKDVAIGSITGGGRYDNLTGIFGMPGLSGVGISFGADRIYDVLNMLDLYP 356

Query: 342 -DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            +++   ++  IN     +   D C  I +++   G  V       ++  Q A A+  G 
Sbjct: 357 QNAIQATQVLFINFG---EAEADYCLPIASQIRAAGISVELYPDCAKMKKQMAYANAKGI 413

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P  V+ G   ++  KV +K+ LTG ++ +S EE+I   + +
Sbjct: 414 PFVVLAGESEINLGKVTLKNMLTGDQQLVSTEELIAIITSK 454


>gi|116072764|ref|ZP_01470030.1| seryl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116064651|gb|EAU70411.1| seryl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 425

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 10/204 (4%)

Query: 9   PILQENPRDAEIASHKLMLR--TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           P ++E   +    + +L L      +        + +  G +    +   + +     G 
Sbjct: 134 PRIEEGLEEHWQIAQRLNLFDTERSVRIAQSRFVTLIGQGARLERALINFMLDLHTSKGY 193

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L +      SG+   + +E  R A   +  +   PT E  +T + R  I    
Sbjct: 194 REVMPPVLVNTASLTGSGQLPKFAEESFRCA---EDDLWLTPTAEVPVTSLHRDEIIPAD 250

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  +      FR E     R   G++R  +F   + Y F + P+ S+ ++ ++     
Sbjct: 251 QLPLRYSAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWF-VHPDQSEEAHQQITADAE 309

Query: 183 RIFHRLGLKSIPMRAESGPIGGDL 206
            +   L L    +   +G +G   
Sbjct: 310 AVLQALDLPYRVLDLCTGDLGFSA 333


>gi|325578023|ref|ZP_08148217.1| serine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160256|gb|EGC72384.1| serine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 429

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I    +LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIVDEADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQDTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|322368267|ref|ZP_08042836.1| seryl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552283|gb|EFW93928.1| seryl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 451

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 76/207 (36%), Gaps = 15/207 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L++ P D  I  ++L     +I +         G Y     G +    +   + +     
Sbjct: 133 LRDLPAD-VIPHYELGEELDIIDEERAAKTTGSGFYFLKGDGARLEHAIMQFMLDVHREQ 191

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             +++  P   ++D    +G+   + ++  ++     + +   PT E  +T+++   I  
Sbjct: 192 DYVDIFPPIPINSDSMTGTGQLPKFAEDAYKI---EGEDLWLCPTAEVPVTNMYADDILL 248

Query: 125 YRNLPFTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E         G++R  +F   +  +F + PE S    + +   
Sbjct: 249 RDDLPLKHQAYTPNFRREAGEHGTETRGIVRVHQFNKVEMVNF-VEPEESYDRLDILLDE 307

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLS 207
              +  RL L    +   +G +G   +
Sbjct: 308 AEEVLRRLELPYRVLELCTGDLGFKAT 334


>gi|288818895|ref|YP_003433243.1| seryl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788295|dbj|BAI70042.1| seryl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752482|gb|ADO45965.1| seryl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 424

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G K    +   + +   + G +E+  P L    +   +G+   + +E+ R        +
Sbjct: 170 MGAKLERALINFMLDMHAKKGYVEIMPPHLVKPQVLEGTGQLPKFEEELYRC---ERDEL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++FR  I     LP         +R E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVPLTNLFRDEILREDQLPIYLTSYTPCYRREAGAYGKDIRGIIRQHQFNKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S      +      I   L L    +   +G +G   +     E    + +
Sbjct: 287 VKI-VKPEDSYRELEGLTSDAEDILRALELPYRVVLLCTGDMGFSSAKTYDIEVWFPSQS 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              +V    +  +F      T + D    N  V 
Sbjct: 346 RYREVSSCSNCEEFQARRMGTRYKDQKGRNIYVH 379


>gi|49484921|ref|YP_042142.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|56749400|sp|Q6GD81|SYS_STAAS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|49243364|emb|CAG41781.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 428

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|15920522|ref|NP_376191.1| histidyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|32130136|sp|Q975U9|SYH_SULTO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|15621305|dbj|BAB65300.1| 426aa long hypothetical histidyl-tRNA synthetase [Sulfolobus
           tokodaii str. 7]
          Length = 426

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 141/436 (32%), Gaps = 34/436 (7%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI     +G+  +       +  V     +     G  E+  P ++   L+   G  +  
Sbjct: 1   MISYEPVRGMKDYYGEELHKIKVVENAFLKIVKLAGYQEVETPIVEDFQLFALKGG-EEL 59

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
              M    D+  + +   P     +   + + ++ +   P   Y +   +R +  P+FG 
Sbjct: 60  RNTMYVFKDKAGREVALRPEFTPSIVRFYLNSLQ-HLPKPIRLYYLGTVYRYDE-PQFG- 116

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-----------IPMRAE 198
            R REF          +   S     ++ +    I+  L L +           I     
Sbjct: 117 -RYREFRQAGIELLGSSNIYSDLEILQILI---EIYRELNLINKIRLKINNISLIRKILN 172

Query: 199 SGPIGGDLSHEFIVLADTGETQ----VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              I  +L   F+ L D G+      +  S ++ +      + +  DI S N I E  T 
Sbjct: 173 KLNISDNLQEHFLHLIDKGKIDEALSLLPSSEYTELITNILSVNNLDISSYNKIKEDLTE 232

Query: 255 PYAATSDVHN-------EKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGAD 306
            Y     + +       + + D+L  N      G   G  +Y G  +  L  S +F  A 
Sbjct: 233 KYNLKDLIQDLDRIMLLKNILDNLGVNS-YIDLGFVRGLAYYTGLIFEVLHPSVSFSIAG 291

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  +   +  YG      +   I        +  P++V   +  +  I   D+       
Sbjct: 292 GGRYDNLVELYGGPQTPAIGFAIGVERTALVLEEPNTVKEKQNKIGVIVLSDEAIL-YAI 350

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I  +L         +     I          G+   + +G K   D  + +K+  T  +
Sbjct: 351 RIVDKLRSNNYIATINLKSISISKLIPSYAEEGYSFLIFIGKKEYEDKTITLKNLSTKEQ 410

Query: 427 EDMSLEEVINYASHRF 442
             +  E +++Y     
Sbjct: 411 VTIKEENLLDYLKQII 426


>gi|255349124|ref|ZP_05381131.1| seryl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503661|ref|ZP_05382051.1| seryl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255507340|ref|ZP_05382979.1| seryl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525773|emb|CBJ15254.1| seryl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435348|gb|ADH17526.1| seryl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296439065|gb|ADH21218.1| seryl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 428

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   +  +Q   G      P L   D+   SG+   +  +  R
Sbjct: 159 GSGWPAYCNEGVLLEWALLTYLLNKQQAHGFQLWLPPLLVKRDILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D  D+++   PT E V+       I + ++LP  +      FR E         G++R
Sbjct: 219 VED-GDQSLFLIPTAEVVLNGFHSQEILNEQDLPLCYAAFTPCFRREAGAGGAHERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   + ++F  TPE  +  Y KM      I   L L        +G +
Sbjct: 278 VHQFHKVEMFAF-TTPEQEEVVYQKMLHVVEEILSELQLPYQLSLLSTGDM 327


>gi|258511548|ref|YP_003184982.1| glycyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478274|gb|ACV58593.1| glycyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 464

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 72/462 (15%), Positives = 148/462 (32%), Gaps = 53/462 (11%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I   S+   G+   + + PLG +   N+             + + +    L +
Sbjct: 11  LAKRRGFIFPGSEIYGGLANTWDYGPLGAQVKHNLKRAWWRFFIEQNPLNVGLDSAILMN 70

Query: 77  ADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
             +WV SG   ++   M+   +   R     +     E     +    +  +  +     
Sbjct: 71  KQVWVASGHVANFHDPMVDCRQCKARFRADKLIEEAAEAKGKSLVVDGLP-FAEMERLME 129

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           ++Q+   +           R+F M       +T + +   Y +   +   IF        
Sbjct: 130 ELQIACPNC--GARDFTNVRQFNMMFRTFQGVTEDAANEVYLR-PETAQGIFVNFKNVQR 186

Query: 194 PMR----AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            MR       G  G    +E         T+ F   +   F  P E+  +        + 
Sbjct: 187 TMRKKLPFGIGQFGKSFRNEITPGNFIFRTREFEQMELEFFCAPGEDEKWFAYWRQTCMD 246

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMS 299
              +         H      +  +    S    ++ + F FG          T Y L   
Sbjct: 247 WLLSLG---IKPDHLRFRDHAKEQLSHYSKATTDIEYRFPFGWGELLGVANRTDYDLKAH 303

Query: 300 ATFKGADG-------KDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDS 343
               G +        +          IGA R+  AV   ++D +          +     
Sbjct: 304 QEHSGENMMVQEEGQEPFIPYCIEPSIGADRLFLAVFADAYDEEEVAEGDTRVVLRLHPK 363

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP++++++ +        +   ++Y  L K      +D+ G  IG ++   D +G P  
Sbjct: 364 LAPYQVAVLPLSKK---LNEPAHRLYLDLIKT-YSADYDETG-SIGKRYRRQDEIGTPFC 418

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V    +  SD +V I+ R +  +  + +E V  +   +  ++
Sbjct: 419 VTYDFESESDGQVTIRMRDSMEQVRIPIEGVRTWLDEQLQSS 460


>gi|49482262|ref|YP_039486.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221141524|ref|ZP_03566017.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257424205|ref|ZP_05600634.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426882|ref|ZP_05603284.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429518|ref|ZP_05605905.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432165|ref|ZP_05608528.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257435126|ref|ZP_05611177.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282907056|ref|ZP_06314904.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910035|ref|ZP_06317843.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912283|ref|ZP_06320079.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912923|ref|ZP_06320715.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282922551|ref|ZP_06330241.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|283959493|ref|ZP_06376934.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497976|ref|ZP_06665830.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511566|ref|ZP_06670260.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293550175|ref|ZP_06672847.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|295429306|ref|ZP_06821928.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589192|ref|ZP_06947833.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|304379957|ref|ZP_07362686.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56749429|sp|Q6GKT6|SYS_STAAR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|49240391|emb|CAG39037.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257273223|gb|EEV05325.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276513|gb|EEV07964.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279999|gb|EEV10586.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283044|gb|EEV13176.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257285722|gb|EEV15838.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|269939535|emb|CBI47893.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
 gi|282314772|gb|EFB45158.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282323023|gb|EFB53342.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282323979|gb|EFB54295.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326101|gb|EFB56406.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329955|gb|EFB59476.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789085|gb|EFC27912.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919222|gb|EFD96298.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291096907|gb|EFE27165.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465524|gb|EFF08056.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|295127065|gb|EFG56709.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577703|gb|EFH96416.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|302749920|gb|ADL64097.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304341537|gb|EFM07447.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436850|gb|ADQ75921.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195235|gb|EFU25623.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00]
 gi|329312733|gb|AEB87146.1| Seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
          Length = 428

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|57651117|ref|YP_184920.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87160901|ref|YP_492731.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193832|ref|YP_498617.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151220220|ref|YP_001331043.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161508275|ref|YP_001573934.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253730408|ref|ZP_04864573.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733830|ref|ZP_04867995.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451358|ref|ZP_05699389.1| seryl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|262049439|ref|ZP_06022311.1| seryl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262051875|ref|ZP_06024090.1| seryl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282920728|ref|ZP_06328447.1| seryl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|284023046|ref|ZP_06377444.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|294849837|ref|ZP_06790577.1| seryl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|2501053|sp|P95689|SYS_STAA8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461619|sp|Q5HJY7|SYS_STAAC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123487796|sp|Q2FKP7|SYS_STAA3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|172048753|sp|A6QD48|SYS_STAAE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083592|sp|A8YYT2|SYS_STAAT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|1835218|emb|CAA71057.1| seryl-trna synthetase [Staphylococcus aureus]
 gi|57285303|gb|AAW37397.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87126875|gb|ABD21389.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201390|gb|ABD29200.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373020|dbj|BAF66280.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160367084|gb|ABX28055.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725888|gb|EES94617.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728133|gb|EES96862.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257860888|gb|EEV83705.1| seryl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|259160202|gb|EEW45231.1| seryl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|259162436|gb|EEW47006.1| seryl-tRNA synthetase [Staphylococcus aureus D30]
 gi|282594136|gb|EFB99124.1| seryl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|283469238|emb|CAQ48449.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
 gi|294823385|gb|EFG39814.1| seryl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|315197927|gb|EFU28260.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141426|gb|EFW33269.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144409|gb|EFW36174.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329731890|gb|EGG68250.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 428

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|15605462|ref|NP_220248.1| seryl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789469|ref|YP_328555.1| seryl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237803159|ref|YP_002888353.1| seryl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237805080|ref|YP_002889234.1| seryl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311560|ref|ZP_05354130.1| seryl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317861|ref|ZP_05359107.1| seryl-tRNA synthetase [Chlamydia trachomatis 6276s]
 gi|8928371|sp|O84734|SYS_CHLTR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123606634|sp|Q3KKW5|SYS_CHLTA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|3329186|gb|AAC68324.1| Seryl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167999|gb|AAX51007.1| seryl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273380|emb|CAX10295.1| seryl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274393|emb|CAX11188.1| seryl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|296437204|gb|ADH19374.1| seryl-tRNA synthetase [Chlamydia trachomatis G/11222]
 gi|297748860|gb|ADI51406.1| Seryl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749740|gb|ADI52418.1| Seryl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 428

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   +  +Q   G      P L   D+   SG+   +  +  R
Sbjct: 159 GSGWPAYCNEGVLLEWALLTYLLNKQQAHGFQLWLPPLLVKRDILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D  D+++   PT E V+       I + ++LP  +      FR E         G++R
Sbjct: 219 VED-GDQSLFLIPTAEVVLNGFHSQEILNEQDLPLCYAAFTPCFRREAGAGGAHERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   + ++F  TPE  +  Y KM      I   L L        +G +
Sbjct: 278 VHQFHKVEMFAF-TTPEQEEVVYQKMLHVVEEILSELQLPYQLSLLSTGDM 327


>gi|301156526|emb|CBW15997.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Haemophilus parainfluenzae T3T1]
          Length = 429

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I    +LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIVDEADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQDTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|21281738|ref|NP_644824.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|297209443|ref|ZP_06925841.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300911467|ref|ZP_07128916.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|30173173|sp|Q8NYY2|SYS_STAAW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21203173|dbj|BAB93874.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|296885904|gb|EFH24839.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300887646|gb|EFK82842.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 428

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|321441327|gb|ADW85078.1| glu- + pro-tRNA synthetase [Poecilocampa populi]
          Length = 134

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   + ++  YV   S+G+   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPETQEKNYVYQNSWGLT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             +   D C+K+   L   G     D       
Sbjct: 74  GLVLPPRVAEIQAIVVPCGITASSTTEERKSLTDECKKLVDSLIAAGVRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|294651243|ref|ZP_06728571.1| serine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822896|gb|EFF81771.1| serine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 423

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADTLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPITNFVRDEIIDADRL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYSAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPEHSMQALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G         E  V +     ++    +  DF        +
Sbjct: 310 LQALGLPYRKILLCGGDMGFGAVKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 368


>gi|301063988|ref|ZP_07204453.1| serine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300441899|gb|EFK06199.1| serine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 428

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +        G  E+  P + +A     +G+   + +++ ++     + +
Sbjct: 169 GAALERALINFMIHIHTTEHGYTEILPPFMVNAASMFGTGQLPKFEEDLFKVK---GRDL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  +    +LP  +      FR E     +   G++R  +F   + 
Sbjct: 226 YLIPTAEVPVTNMHREEVLQEDDLPAAYVAYTPCFRSEAGSYGKDTRGLIRQHQFNKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             F   PE S H   K+  +   I  RL L    +   +G IG   +  +
Sbjct: 286 VKFS-KPEDSYHELEKLTQNAEEILRRLELPYRVVTLCTGDIGFSAAKTY 334


>gi|297559717|ref|YP_003678691.1| glycyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844165|gb|ADH66185.1| glycyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 462

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 139/442 (31%), Gaps = 56/442 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV         +     + +    + + ++W  SG   ++   +    
Sbjct: 35  WDYGPLGVELKNNVKRQWWRSMVQERDDIVGLDSSVILAREVWEASGHVTAFVDPLTECQ 94

Query: 98  DRNDKAMI--YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
             + +         +EE         + +                 E R   G++R+   
Sbjct: 95  SCHKRFRADHLVEAYEEKHGHEPAEGLAAIACPNCGAKDSFT----EPRMFNGLLRTYLG 150

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +  +     L PE ++     +F++Y  +          +    G IG    +E     
Sbjct: 151 PVQDEKGLAYLRPETAQ----GIFINYKNVEQS---ARRKVPFGIGQIGKSFRNEITPGN 203

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T+ F   +   F  P  + ++                 A  +    E       + 
Sbjct: 204 FIFRTREFEQMEMEFFVKPGSDEEWHQHWIDIRHQWYVDLGIAKDNLRLYEH---PQEKL 260

Query: 275 KRVSARGIEVGHIFYFG-------------TKYSLPMSAT--------FKGADGKDHYVQ 313
              S R +++ + F F              T Y L   +         F     + +   
Sbjct: 261 SHYSKRTVDIEYRFNFQGSEWGELEGIANRTDYDLRTHSEASGVDLSYFDQESNERYIPY 320

Query: 314 MGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQV 360
           +     G  R V   +  +++                +     +AP K +++ + + +  
Sbjct: 321 VIEPAAGVDRAVLTFMLDAYNVDEAPNAKGKLEKRAVMRLDPRLAPVKAAVLPL-SRNAD 379

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                  + ARL K   +V +DD G  IG ++   D +G P  V V    + D  V ++ 
Sbjct: 380 LSPKARDLAARLRK-RWNVEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLEDDAVTVRE 437

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R T  +E +SL+ V  Y   R 
Sbjct: 438 RDTMSQERVSLDRVETYLFERL 459


>gi|294636937|ref|ZP_06715263.1| serine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291089855|gb|EFE22416.1| serine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 430

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G +E
Sbjct: 133 DFEVRDHVTLGEMADGLDFAAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEQHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +G ++       ++A        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHDTLYGTGQLPKFGADLFHTRPLEEEADSSTYALIPTAEVPVTNLVRGEILD 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 253 ESELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VRPEDSMAALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   L L    +   +G +G   S     E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLNLPYRKVLLCTGDMGFGSSKTYDLEVWVPAQNTYREISSCSNMWDF 365


>gi|269976456|ref|ZP_06183441.1| glycyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|306818266|ref|ZP_07451995.1| glycyl-tRNA synthetase beta subunit [Mobiluncus mulieris ATCC
           35239]
 gi|269935257|gb|EEZ91806.1| glycyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|304648911|gb|EFM46207.1| glycyl-tRNA synthetase beta subunit [Mobiluncus mulieris ATCC
           35239]
          Length = 461

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 154/480 (32%), Gaps = 72/480 (15%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            L++    A+      +   G I+  ++  + + PLG +  +N+         R+    +
Sbjct: 4   TLEQVISLAKRRG--FVYPCGEIYGGTRAAWDYGPLGVELKENIKKAWWNYMVRSREDVV 61

Query: 70  SV--PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +    +    +W  SG   ++   ++     + +        E+ + + +         
Sbjct: 62  GLDSSVILPPKVWEASGHLKAFTDPLIECTSCHKRYR------EDDLQEKYAEKHGIDNP 115

Query: 128 LPFTFYQIQLKFRD------ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVS 180
                  +  +         E R   G++++    + D      L PE ++  +      
Sbjct: 116 DTVDMAVVACENCGVKGQWTEPRAFSGLLKTYLGPVDDESGLHFLRPETAQGIFINFANV 175

Query: 181 YLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                 R   G+         G IG    +E         T+ F   +   F  P  + +
Sbjct: 176 MNSARMRPPFGI---------GQIGKSFRNEITPGNFIFRTREFEQMELEFFVEPGTDEE 226

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFG----- 291
           +      +         Y       +   F   P+ K    S R +++ + F F      
Sbjct: 227 WHQYWIDHRFAW-----YTDLGISADNLRFYEHPKEKLSHYSKRTVDIEYAFGFEGSKWG 281

Query: 292 --------TKYSLPMSAT-------FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDG 335
                   T Y L + A        +      + +   +     G  R + A +  ++  
Sbjct: 282 ELEGIANRTDYDLSVHAEASGQKLDYYDQAKDERWVPYVIEPSAGLTRSLMAFLIEAYTE 341

Query: 336 KG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                          +     +AP K+++  + +  +   +    I A L K   +V +D
Sbjct: 342 DEAPNTKGGVDKRTVLRLDPRLAPVKVAVFPL-SKKETLPELARGIAADLRKFW-NVDYD 399

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D G  +G ++   D +G P  V V    VSD  V ++ R +  +E + +E ++ Y   + 
Sbjct: 400 DAGA-VGRRYRRQDEIGTPYCVTVDFDSVSDHAVTVRERDSMTQERIPMEGLVAYLRDKL 458


>gi|218129700|ref|ZP_03458504.1| hypothetical protein BACEGG_01279 [Bacteroides eggerthii DSM 20697]
 gi|317475947|ref|ZP_07935202.1| seryl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988112|gb|EEC54436.1| hypothetical protein BACEGG_01279 [Bacteroides eggerthii DSM 20697]
 gi|316907879|gb|EFV29578.1| seryl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 117/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKESHQEMLN 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++      T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRTAEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|329732416|gb|EGG68766.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 428

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|323439689|gb|EGA97407.1| seryl-tRNA synthetase [Staphylococcus aureus O11]
          Length = 428

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|156974089|ref|YP_001444996.1| seryl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166223309|sp|A7MSW8|SYS_VIBHB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|156525683|gb|ABU70769.1| hypothetical protein VIBHAR_01800 [Vibrio harveyi ATCC BAA-1116]
          Length = 435

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +   G  +    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFELKDHVDLGEMGGGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L ++D    +G+   +GK++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLVEKVNDEEPRKLSLIPTAEVPVTNLVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S ++  ++
Sbjct: 255 ISDEADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|119719569|ref|YP_920064.1| histidyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|119524689|gb|ABL78061.1| histidyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 431

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 122/419 (29%), Gaps = 45/419 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           ++ Q  +G   WLP    A   V+  IRE     G  E+  P  +  DL       +   
Sbjct: 5   LVLQPPRGTRDWLPEEAYAKRIVSEKIREVFESYGYGEVITPAFEYLDLLKAKAG-EEVV 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           +++    D+  + +         +  I  S +   +  P  FY +Q  +R E  P+ G  
Sbjct: 64  EQIYAFKDKAGRELGLRFEMTTPIARIVASRLDLAK--PLRFYYVQPVWRYEE-PQRG-- 118

Query: 151 RSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYL--------------RIFHRLGL----- 190
           R REF       F ++ PEG        F +                R+   L L     
Sbjct: 119 RWREFWQAGIELFGISEPEGDAEVVAVTFDALKAVGLKDFDIRVNDRRVVEDLVLGAGIP 178

Query: 191 -KSIPMRAESGPIGGDLSHEFIV--LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
              +P              E++V  LA  G  +   +         S + D         
Sbjct: 179 GDLLPSALRVLDKMDKFGEEYVVSELAKLGLREDAATSLLEKLKSGSLDIDTSTQPGREG 238

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG----IEVGHIFYFGTKYSLPMSATFK 303
           +           +        D           G    ++ G     G   S+     + 
Sbjct: 239 LRRLALVVDTLKNCYGINVTVDYAIVRGLGYYTGFVFEVKAGSSEGLG---SIAGGGRYD 295

Query: 304 GADGKDHYVQMGSYGIGAMRVVAA--VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                   V  G     +   +    ++E+      +          + +I +K   ++ 
Sbjct: 296 D----LVSVVGGPKIPASGMAIGVERLLEALSMQGALKLDYRE--VDVCVIPVKKTPEIL 349

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +A   +   L   G  V  +     +      A   G    +I+G + + +  V ++ 
Sbjct: 350 SEAV-AVARELRVAGMKVVLEVSERSLSKLLEAASKRGARFAIILGERELKEGVVTVRD 407


>gi|333030166|ref|ZP_08458227.1| seryl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332740763|gb|EGJ71245.1| seryl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 15/200 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + P DA I   +L  +  +I           G   +   G +    +     +E    G 
Sbjct: 136 DLPADA-IPHWELAKKYDLIDFELGVKITGAGFPVYKGKGARLQRALINFFLDEARDAGY 194

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +A     +G+      +M      +   +   PT E  +T+I+R  I + +
Sbjct: 195 LEIEPPYVVNAASGFGTGQLPDKEGQMYHATADD---LYLIPTAEVPVTNIYRDVILNEK 251

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G+ R  +F   +    D TPE S  S  +M     
Sbjct: 252 ELPIKNCAYSACFRREAGSYGKDVRGLNRLHQFNKVEIVRID-TPEHSYESLKEMIAHVE 310

Query: 183 RIFHRLGLKSIPMRAESGPI 202
            + ++LGL    +R   G +
Sbjct: 311 GLVNKLGLPYRILRLCGGDM 330


>gi|221194874|ref|ZP_03567931.1| histidyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185778|gb|EEE18168.1| histidyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 437

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 129/444 (29%), Gaps = 69/444 (15%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV--ESGRYDSYGKEMLRL-------- 96
            ++ + +  I R      G   +  P ++  D +V       D   KEM R+        
Sbjct: 16  MRSWERMQDIARHLFGTYGFDRIETPAIEQVDTFVHGIGESTDVVRKEMFRVFSGALMED 75

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR----NLPFTFYQIQLKFRDELRPRF 147
                ++   K         E    + R+ ++         P   +  +  FR E RP+ 
Sbjct: 76  LLASGSEAGLKPRQRMAMRPEGTAGVVRAAVEHNFVPQGAAPAKMWYAEAMFRGE-RPQK 134

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD-- 205
           G  R R+F          +   +      M    ++ F  LG  +  ++     +G    
Sbjct: 135 G--RLRQFHQVGVEWLGASDPAADAESIIML---MQFFKELGFDTSRLKLMINSMGDAEC 189

Query: 206 ------------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                       L H   +  D  E          D    S      D   ++  +    
Sbjct: 190 RPAYREKVKQFILDHADRMCDDCIERAEINPLRAFDCKNESCQAVMKDAPLISDNLCDDC 249

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF--------------GTKYSLPMS 299
             +      + +    +  E+     RG++      F              G +Y   M 
Sbjct: 250 RAHYEQVKAYLDAAGIAYVEDPT-LVRGLDYYTRTVFEVEALDAGIGAIGGGGRYDGLME 308

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  GK        + +G  R++ A+     +         +A     +       +
Sbjct: 309 L----EGGKPTPGV--GFAVGFERIMLALAAQGIETD-------IAA-PCCVYVATTSAE 354

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             R+    +   L   G     D  G  + +QF  AD LG  L V++G   V+     ++
Sbjct: 355 EARE-AFSVVLALRGAGIRTEADRTGRSLKAQFKQADKLGAKLCVVLGPDEVAAGVATLR 413

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
              T  +  +  + ++     R +
Sbjct: 414 DMTTHEQIQVPADRLVEEVRQRLA 437


>gi|15922999|ref|NP_370533.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925714|ref|NP_373247.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|148266456|ref|YP_001245399.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150392489|ref|YP_001315164.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156978340|ref|YP_001440599.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316847|ref|ZP_04840060.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|254663943|ref|ZP_05143415.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793547|ref|ZP_05642526.1| seryl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258411147|ref|ZP_05681426.1| seryl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258420949|ref|ZP_05683883.1| seryl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258438588|ref|ZP_05689811.1| seryl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443956|ref|ZP_05692294.1| seryl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258446228|ref|ZP_05694388.1| seryl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258449113|ref|ZP_05697219.1| seryl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258454409|ref|ZP_05702377.1| seryl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|269201699|ref|YP_003280968.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894288|ref|ZP_06302518.1| seryl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282927759|ref|ZP_06335373.1| seryl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|295406873|ref|ZP_06816677.1| seryl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296275678|ref|ZP_06858185.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245908|ref|ZP_06929770.1| seryl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|46577645|sp|P61083|SYS_STAAM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|46577646|sp|P99178|SYS_STAAN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166223293|sp|A7WWP0|SYS_STAA1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083590|sp|A6TXF9|SYS_STAA2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083591|sp|A5INQ0|SYS_STAA9 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|13699926|dbj|BAB41225.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14245776|dbj|BAB56171.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147739525|gb|ABQ47823.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149944941|gb|ABR50877.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156720475|dbj|BAF76892.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787519|gb|EEV25859.1| seryl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257840032|gb|EEV64497.1| seryl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257843139|gb|EEV67554.1| seryl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257848147|gb|EEV72139.1| seryl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257850840|gb|EEV74784.1| seryl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257855054|gb|EEV77997.1| seryl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257857546|gb|EEV80441.1| seryl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257863503|gb|EEV86263.1| seryl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262073989|gb|ACY09962.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590519|gb|EFB95597.1| seryl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282763333|gb|EFC03463.1| seryl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|285815736|gb|ADC36223.1| Seryl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|294968338|gb|EFG44363.1| seryl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|297177273|gb|EFH36526.1| seryl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|312828572|emb|CBX33414.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129552|gb|EFT85544.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725506|gb|EGG61985.1| serine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 428

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDIEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|296170819|ref|ZP_06852387.1| histidine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894524|gb|EFG74263.1| histidine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 420

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 134/432 (31%), Gaps = 41/432 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  ++P        V   +     R G  ++ +P  +   L+        D   KE
Sbjct: 6   APKGVPDYVPPDSAQFVAVRDGLLGAARRAGYGDIELPIFEDTALFARGVGESTDVVSKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   ADR D+++   P     +      H      LP         FR E RP+ G  R 
Sbjct: 66  MYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYE-RPQAG--RY 122

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+       +  +           +  +    F  LGL    +   S       P   +L
Sbjct: 123 RQLQQVGVEAIGVDDPALDAEVIAVADA---GFRSLGLDGFRLEITSLGDDSCRPQYREL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             EF+   D  +     ++      +  +      + +   ++    +  A         
Sbjct: 180 LQEFLFGLDLDDETRRRAEINPLRVLDDKRPGVRAMTADAPVLLDHLSDVAKQHFDTVLA 239

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYV 312
             D+L     ++ R             E  H    G +  +     + G     G     
Sbjct: 240 HLDALGVPYVINPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMRELGGQDLS 298

Query: 313 QMGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            +G +G+G  R + A+  E    G         A   +  + + +     + A      R
Sbjct: 299 GIG-FGLGVDRTLLALRAEGKSVG-------ETARCDVFAVPL-SEQAKLQLAVLAARLR 349

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +    D+ + D G + G+    AD  G  + +++G + +    V +K   TG +  +  
Sbjct: 350 AAGARVDMAYGDRGLK-GAM-RAADRSGARVALVLGDRDIEAGTVGVKDLTTGEQVSVPA 407

Query: 432 EEVINYASHRFS 443
           + V      +  
Sbjct: 408 DSVAAQVLSQLR 419


>gi|255526675|ref|ZP_05393580.1| histidyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296187180|ref|ZP_06855577.1| histidyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255509655|gb|EET85990.1| histidyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048215|gb|EFG87652.1| histidyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 415

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 116/421 (27%), Gaps = 27/421 (6%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V    RE   + G  E+  P  +  +L+        D   K
Sbjct: 4   QAPKGTKDMLPKDAYKWHYVENKFRELSEQYGIKEIRTPMFEHTELFTRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F          P   Y     FR E        R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPSVRAFIESSLYNEAQPTKLYYFIPAFRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-DLSHEF 210
            R+F       F                  +R    LGLK++ +   S  +G  D   +F
Sbjct: 121 LRQFHQYGVEIFGSQEASIDAE---GISIAMRALDELGLKNLSLNINS--LGCPDCRKKF 175

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                +   + +             N             +           + ++     
Sbjct: 176 NDALKSFLKENYDDLCPTCKSRFERNPMRILDCKEEKCKKIAKNAPTILDYICDDCKNHF 235

Query: 271 LPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKGAD-----GKDHYVQMGSYGIGAMR 323
               K + A GI+     Y   G  Y           D     G  +   +   G   M 
Sbjct: 236 EELKKYLDAIGIKYTIDPYIVRGLDYYTKTVFEIIYKDLTVCGGGRYDKLIEELGGPDMP 295

Query: 324 VVAAV-----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                     +  + + +GI  P S        + + A     +    KI   L   G  
Sbjct: 296 AFGFAAGLERLIMTLESEGIEIPRS----DYVDLYVGAMGDDAKIEAFKIVNALRAKGLK 351

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D M   + +    A+  G    V++G   +     ++K    G + ++ L+++ +  
Sbjct: 352 CDSDHMNRSVKASMKYANKTGARFTVVLGENELQAGTAKLKRMEDGQQFEVDLKDLDSIV 411

Query: 439 S 439
            
Sbjct: 412 K 412


>gi|237800569|ref|ZP_04589030.1| seryl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023429|gb|EGI03486.1| seryl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 426

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMLNLHINEHGYEEAYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P+ S  +   +  +  R+   L L    +   +G +G         E  + +   
Sbjct: 290 QIVA-PDDSMAALESLTGNAERVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|189347312|ref|YP_001943841.1| seryl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|238692177|sp|B3EF00|SYS_CHLL2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189341459|gb|ACD90862.1| seryl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 427

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 10/202 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   +   G +   ++   + +      G  E+  P L + +    +G++  +  ++ 
Sbjct: 164 GAGFPVYTGKGARLERSLINFMLDTHTSGHGYTEIFPPFLVNRESLRGTGQWPKFADQVY 223

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +    +  +   PT E  +T++ R  +    +LP  +      FR E     +   G +
Sbjct: 224 TI---EEDGLYAIPTAEVPVTNLHRGEMLDAADLPIAYAAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R  +F   +   F   PE S  +  ++      I   L +    +   SG I  + +  +
Sbjct: 281 RVHQFNKVEMVRF-TRPEVSYEALEEIRQHAEAILLALKIPYRVLLLCSGDISANATKCY 339

Query: 211 IVL-ADTGETQVFCSKDFMDFP 231
            +      E +   +    +F 
Sbjct: 340 DIEVWSPAEDKYLEASSCSNFE 361


>gi|196231356|ref|ZP_03130215.1| glycyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196224692|gb|EDY19203.1| glycyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 588

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 63/394 (15%), Positives = 124/394 (31%), Gaps = 65/394 (16%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             A  ND A +   T + +          S + +PF   QI   FR+E+ PR    RSRE
Sbjct: 205 PTATENDIAYLRPETAQAIFAQFKNVVDSSRQRVPFGICQIGKAFRNEVTPRNFTFRSRE 264

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F + P+ +  +      ++               A+      +   E     
Sbjct: 265 FEQMELEFF-IKPDEAIEAVCGSVAAWSE------------GADLSVPQDNWGWEMWHRY 311

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSL 271
              E   + +   +   +   +    + ++      +   +  P+            D  
Sbjct: 312 WVKERTDYYAGIGLGADVLDYHWQTKEELAHYARACVDILFKFPFGTEELEGLAARGDFD 371

Query: 272 PENKRVSARGI------EVGHIFYFGTKYSLPMSATFKGADGKDH--------------- 310
               + ++R        EV + F   T          K A+ +                 
Sbjct: 372 LMAHQTASRKPMDVFDEEVKNAFAKWTDEQRAALVERKKAEHRAKEKGGLTDAQVDEWCQ 431

Query: 311 -------YVQMGSYGIGAMRVVAAVIESSH------DGKG-------IIWPDSVAPFKIS 350
                     +     G  R+  AV+ +++      D KG       +     +AP K+ 
Sbjct: 432 KLFKGFYVPHVIEPSAGLDRLALAVLSNAYSEVEKTDAKGKSETLYVMRLHPRLAPVKVG 491

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV---- 406
           +  +  +         +++  L K     F+D+ G  IG ++A  D  G P  + +    
Sbjct: 492 VFPLLKNKPELVAKAREVFELLRKH-FSAFYDE-GGSIGKRYARQDEAGTPFCLTIDFET 549

Query: 407 -GSKFVS-DSKVEIKHRLTGIREDMSLEEVINYA 438
            G K       V ++HR  G +E + + E++   
Sbjct: 550 LGEKGEELKDTVTLRHRDDGSKERVKISELLGKL 583



 Score = 41.5 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 12 QENPRDAEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NR 63
          +E P+  +I S  L  R G + Q S       G + + PLG +   N+          +R
Sbjct: 5  KEIPQMEKIVS--LAKRRGFVFQSSEIYGGINGFWDYGPLGAELKRNLRDTWWRTMTRDR 62

Query: 64 TGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
             + +    +    +W  SG  D++   M
Sbjct: 63 EDVVGLDATIIMHPAIWKASGHVDTFADLM 92


>gi|254230182|ref|ZP_04923576.1| seryl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262394647|ref|YP_003286501.1| seryl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151937320|gb|EDN56184.1| seryl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338241|gb|ACY52036.1| seryl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 435

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G  EM VP L ++D    +G+   +GK++
Sbjct: 160 TGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTEMYVPYLVNSDSLFGTGQLPKFGKDL 219

Query: 94  L-------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
                   ++ D   + +   PT E  +T++ R  I    +LP         FR E    
Sbjct: 220 FHTEPLAEKVNDEEPRKLSLIPTAEVPVTNLVRDTISDEADLPIKMTAHTPCFRSEAGSY 279

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +       PE S ++  ++     ++   L L    +   +G +
Sbjct: 280 GRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEELTGHAEKVLQLLELPYRKVVLCTGDM 338

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G         E  V A     ++    +  DF        F
Sbjct: 339 GFGARKTYDLEVWVPAQETYREISSCSNMWDFQARRMQARF 379


>gi|323443262|gb|EGB00879.1| seryl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 428

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|57239428|ref|YP_180564.1| histidyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579400|ref|YP_197612.1| histidyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81672776|sp|Q5HAI0|SYH_EHRRW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|57161507|emb|CAH58433.1| histidyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418026|emb|CAI27230.1| Histidyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 414

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 141/438 (32%), Gaps = 60/438 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKE 92
           +  +G    L         +  + +   +R G I +  P ++  +++ + G   D   KE
Sbjct: 7   REVRGTKDLLDDELYKFQYIQHLAQTIASRYGFIPVDTPIIEFTEVFTKLGNTSDIVTKE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    D+  + +   P   E  + I R  I     +P   +     FR E RP+    R 
Sbjct: 67  MYNFKDKAGEDITLRP---EFTSAIVRLLISKNLTIPVKLFSSGPVFRYE-RPQK--CRQ 120

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-------- 204
           R+F   +   F      +      M      I   L L    ++ E   +G         
Sbjct: 121 RQFHQINFEFFGSDSPIADVE---MISLCYNILSELKLSDR-IKLEINFLGDQETINSYK 176

Query: 205 ------------DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                       DLS +          ++  SK   D  I        D  + NS     
Sbjct: 177 IHLVEYLNKYQKDLSEDSQRRLVVNPLRILDSKSPEDCKILLNAPSISDFYNQNSQNFFK 236

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGK 308
                  +   N  +  ++        + +        G++ S+     + G      G 
Sbjct: 237 EVLDGLDNLSINYVINHNIVRGLDYYCKTVFEFTTSELGSQNSVIAGGRYDGLVKSMGGH 296

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                  + G+     ++A+I+  H            P +I LI I            K+
Sbjct: 297 STPAIGFAAGV---ERLSALIDYEHKK----------PKRIVLIPIGDD---AISYAIKL 340

Query: 369 YARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFP---LQVIVGSKFVSDSKVEIKHRLTG 424
              L   G  V W++  G  +       +L       + +I G + +  + V++K   TG
Sbjct: 341 AYELRCKGIHVCWNNYRGTSL-----KNELRKANDTDIVLIFGDEELQSNTVKVKDMKTG 395

Query: 425 IREDMSLEEVINYASHRF 442
            ++++++ ++++   +R 
Sbjct: 396 DQQNVAVCDLLDNLLYRI 413


>gi|294155972|ref|YP_003560356.1| serine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600158|gb|ADE19654.1| serine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 422

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 13/223 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G K +  +   + +  +  G IE   P +    +   +G+   + +++  L  
Sbjct: 164 FVLYKDKGAKLVRALMNFMLDLHSSKGYIECLPPVIVKDKMLYGTGQLPKFKEDLFTL-- 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                M   PT E  +T+I+   I    + P  F      FR E     R   G++R+ +
Sbjct: 222 -EGGEMYLIPTAEVPLTNIYNDEIVDLTS-PILFTAFTECFRSEAGSSGRDTRGIIRNHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEF 210
           F   +        +  K  + KM      +  +L +    +   +G +G      +  E 
Sbjct: 280 FKKVELVKITSEKDSIKE-FEKMLEDAKDVLVKLEIPFREVLLCTGDLGFSSRKTIDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            + ++    +V       DF        + D  +         
Sbjct: 339 WLPSEMKFREVSSVSYMGDFQARRGMIRYRDENNQTQYAHTMN 381


>gi|221195108|ref|ZP_03568164.1| seryl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185011|gb|EEE17402.1| seryl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 427

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 76/215 (35%), Gaps = 15/215 (6%)

Query: 37  KGIYSWL--PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G   +L   LG +    +   + ++ N+ G  E   P + + D    +G+   +  ++ 
Sbjct: 161 AGTRFYLLGGLGARMERALINFMIDQHNKAGFKEFWPPVITNHDSLFGTGQLPKFEDDLY 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +       +   PT E  +T+I R  I     LP  +      FR+E     R   G++
Sbjct: 221 HVQP----DLYLIPTAEVQLTNIHRGEILDADQLPLLYTAFTPCFREEAGSAGRDTRGII 276

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +   F   PE S +    M     +I   L L    +   +G +G   +   
Sbjct: 277 RVHEFDKVEMVKFS-KPEDSMNQLESMVTEAEKILQLLKLPYHVVTLCTGDLGFSAAKCY 335

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             E  + +     ++    +  DF        F D
Sbjct: 336 DIEVWLPSYNNYKEISSCSNCKDFQARRAGIRFKD 370


>gi|170725902|ref|YP_001759928.1| histidyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|229558741|sp|B1KKJ3|SYH_SHEWM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169811249|gb|ACA85833.1| histidyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 148/436 (33%), Gaps = 44/436 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +  ++RE     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKLETVLRETVAAYGYSEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAES------GPIGG 204
            R+F       + +           + +   R++ +LG+K  + +   +           
Sbjct: 122 YRQFNQFGVEVYGIGTADVDAE---VLMLSARLWEKLGIKEHVTLELNTLGDPAERATYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               EF+        +    + + +    + ++N +   ++     +  +    +     
Sbjct: 179 SALIEFLEQFKEQLDEESQRRMYTNPLRVLDTKNPEVQALLVDAPELMDFLGEESRAHFS 238

Query: 263 HNEKLFDSLPEN---KRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GK 308
           H  +L D++           RG++     +F       G++ ++     + G      GK
Sbjct: 239 HLCELLDAVGIQYVINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVEQLGGK 298

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEK 367
           D       + +G  R+V  +                +   + +  +    +       + 
Sbjct: 299 DTPAV--GFAMGLERIVLLLETLELTSDIP------STVDVYVTAMGDTSKIEAIKIAQT 350

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIR 426
           + + L      V     G     Q   AD  G  + +++G   +++++V +K+ R    +
Sbjct: 351 LRSELPN--LRVMSHCGGGNFKKQMKRADKSGAQIALVIGEDELANNQVAVKYLREKKEQ 408

Query: 427 EDMSLEEVINYASHRF 442
           E ++ + +  Y + + 
Sbjct: 409 ELVARDGLATYIAKQI 424


>gi|262376674|ref|ZP_06069902.1| seryl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262308384|gb|EEY89519.1| seryl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 425

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 19/250 (7%)

Query: 17  DAEIASHKLMLRT--GMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   +     ++ G  E
Sbjct: 135 DFEIKDHTDLGEMMGGLEFETATKLTGSRFSVLKGPLARLQRAITQFMLNTHTDQNGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 195 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEFYLIPTAEVPVTNFVRDEIIDADRL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S     ++      I
Sbjct: 253 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQVLEELTGHAEGI 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              LGL    +    G +G   +     E  V +     ++    +  DF        + 
Sbjct: 312 LQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARYR 371

Query: 241 DIISLNSIVE 250
                   V 
Sbjct: 372 ADQKKTEFVH 381


>gi|16272084|ref|NP_438284.1| seryl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260580586|ref|ZP_05848413.1| seryl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174543|sp|P43833|SYS_HAEIN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|1573062|gb|AAC21787.1| seryl-tRNA synthetase (serS) [Haemophilus influenzae Rd KW20]
 gi|260092648|gb|EEW76584.1| seryl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 429

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|330446442|ref|ZP_08310094.1| seryl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490633|dbj|GAA04591.1| seryl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 435

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFEVKDHVDLGEMAGGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L +AD    +G+   +G+++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNADSLFGTGQLPKFGEDLFHTQPLTEKVNDEEPRTLSLIPTAEVPVTNMMRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITDEADLPVKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGSCKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|317055191|ref|YP_004103658.1| histidyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315447460|gb|ADU21024.1| histidyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 440

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 125/432 (28%), Gaps = 29/432 (6%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
             MI +  KG    LP        +  +  E   + G  E+ VP  +   L++ S     
Sbjct: 1   MAMIQR-PKGTADMLPSQAYKWHTIEKLASETAEQYGFREIRVPAFEETGLFLRSVGETT 59

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM  +    D      P     +      +       P   + +   FR E    
Sbjct: 60  DVVQKEMYTVTATGDSEFTLRPEGTAGVMRAMIENGLLNEAFPQKVFYLINCFRHE---N 116

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               R REF              +      M  S++    R+GL+ I +   S  IG   
Sbjct: 117 VQKGRLREFHQFGCEMVGSADAKADADVISMAKSFM---DRIGLRDIELNINS--IGCPT 171

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  A          +         E      +   + I ++         D   E 
Sbjct: 172 CRAKYQQALREYFGARREELCDTCKERLEKNPMRLLDCKSPICKEIGKNAPLIIDYLCED 231

Query: 267 LFDSLPENKRVSA-RGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGA 321
             D   + K+     GI+         G  Y          K    +      G Y    
Sbjct: 232 CNDHFEKLKKYLGLMGIDFVVNPRIVRGLDYYTRTVFEFISKDIGAQGTVCGGGRYDGLI 291

Query: 322 MRVVAAVIESSHDGKGI---IWPDSVAPFKI-----SLINIKAHDQVCRDACEKIYARLS 373
             +    + +     GI   I                 + I +      D   ++  +L 
Sbjct: 292 EELSGKAVPALGFAMGIERLILTMEAQNCDFMEAKTCDLYIASMGDDAADKAMELAMKLR 351

Query: 374 KVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G  V +D    G +   ++  A  +G    +++GS  +     ++K+  +G + D+ L
Sbjct: 352 DEGYFVEYDLMGRGIKPQMKY--AGKIGAKFVLVIGSSELETGCAKLKNMASGEQADIKL 409

Query: 432 EE-VINYASHRF 442
           ++  I+  S+  
Sbjct: 410 DDSFIDDFSNAL 421


>gi|162446896|ref|YP_001620028.1| seryl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|189083556|sp|A9NE72|SYS_ACHLI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|161985003|gb|ABX80652.1| seryl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 423

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +      G  E+  P + +      +G++  + ++  +L       
Sbjct: 169 LGARLERALINFMIDTHAYTHGYTEIIPPFIVNDKSMYATGQFPKFKEDAFKL---EGFD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E    ++FR  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 226 WYLNPTAEVPTINLFRDEIIDNDALPIQYVAYTTAFRSEAGSAGRDTKGILRQHQFNKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              F   PE S+ ++  M  +  RI   L +    +   +G +G  +S  + + 
Sbjct: 286 LIKF-ARPEDSEQAHQDMLANSERILQLLNIPYRVVVLSTGDMGFGMSKTYDIE 338


>gi|94268694|ref|ZP_01291257.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
 gi|93451499|gb|EAT02326.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 13/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              +    + + + +    + G  E+  P L ++     +G+   + +++ R+       
Sbjct: 171 FAARLERALISFMLDLHTEKHGYTEVLPPFLVNSASMTATGQLPKFAEDLFRI---EGAD 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+I R    + + LP  +      FR E     R   G++R  +F   +
Sbjct: 228 LWLIPTAEVPVTNIHRDETLAEKELPIYYCAYTPCFRSEAGSYGRDTKGLIRQHQFDKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLAD 215
              F  TPE S     K+     ++   L L    +   SG +G         E  + A 
Sbjct: 288 LVKF-TTPETSDAELEKLLSDAEKVLQLLELPHRVVTLCSGDLGFSARKTYDIEVWMPAQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++    +F DF
Sbjct: 347 NCYREISSCSNFGDF 361


>gi|302331781|gb|ADL21974.1| seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 428

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|217316873|gb|ACK37842.1| putative glutamyl-prolyl tRNA synthetase [Cyclograpsus cinereus]
          Length = 133

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  + K+  YV   S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVFEDPESKEKQYVYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++        I+        AC  +   L   G     D   
Sbjct: 74  GLVLPPRVASIQAVIMPVGITAKTIEGDKTALYQACRDLEKELQDSGVRARCDLKD 129


>gi|94270597|ref|ZP_01291778.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
 gi|93450746|gb|EAT01810.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 13/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              +    + + + +    + G  E+  P L ++     +G+   + +++ R+       
Sbjct: 171 FAARLERALISFMLDLHTEKHGYTEVLPPFLVNSASMTATGQLPKFAEDLFRI---EGAD 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+I R    + + LP  +      FR E     R   G++R  +F   +
Sbjct: 228 LWLIPTAEVPVTNIHRDETLAEKELPIYYCAYTPCFRSEAGSYGRDTKGLIRQHQFDKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLAD 215
              F  TPE S     K+     ++   L L    +   SG +G         E  + A 
Sbjct: 288 LVKF-TTPETSDAELEKLLSDAEKVLQLLELPHRVVTLCSGDLGFSARKTYDIEVWMPAQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++    +F DF
Sbjct: 347 NCYREISSCSNFGDF 361


>gi|85059737|ref|YP_455439.1| histidyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123725388|sp|Q2NS41|SYH_SODGM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|84780257|dbj|BAE75034.1| histidyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 142/436 (32%), Gaps = 49/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        V   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPEETAFWQCVEGTLKNVLASYGYSEIRLPIVEQTPLFQRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F             + +   R +  LG++   +  E   IG   +    
Sbjct: 122 YRQFHQMGAEVFGQQGPDVDAE---LILLTARWWRALGIQE-HVALELNSIGSLEACARY 177

Query: 212 VLADTG-----ETQVFCSKDFMDFPIPSENTDFDD-------IISLNSIVEQWTAPYAAT 259
             A        E ++           P    D  +         +            A  
Sbjct: 178 REALVAFLRQHEDRLDEDCRRRMHTNPMRVLDTKNPDIQVLLNDAPVLTDYLDDDSQAHF 237

Query: 260 SDVHNEKLFDSLPEN-KRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--AD--G 307
           S +        +P        RG++     +F       G++ ++     + G      G
Sbjct: 238 SGLCELLDLAGIPYTVNPRLVRGLDYYNRTVFEWVTTRLGSQGTVCGGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA--- 364
           +        + +G  R+V  V   +        PD  A  ++    + A D V R+A   
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVN--------PDFAAAARVDAYLVAAGDGVQREALRL 347

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++   LS +     +   G     QF  AD  G  + +++G    +  +V +K   TG
Sbjct: 348 AEQLRDELSSLRLMTNY--GGGSFKKQFGRADKHGARIALVLGESEAAAGQVVVKDLATG 405

Query: 425 IREDMSLEEVINYASH 440
            +E ++  +V    + 
Sbjct: 406 NQETLAQSDVAARLAS 421


>gi|319779674|ref|YP_004130587.1| Histidyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317109698|gb|ADU92444.1| Histidyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 444

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 133/441 (30%), Gaps = 45/441 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP        +  ++       G   +  P L+   L+    G   D   KEM  
Sbjct: 14  GMNDILPTESFQWLILEDMLHSLMKSYGYKNIRTPVLEQTRLFARGIGEVTDIVEKEMYT 73

Query: 96  LADRNDKAMIYGPTHE-EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            +   DKA +     E                +     Y +   FR E RP+ G  R R+
Sbjct: 74  FSMSQDKADMLTMRPEFTAGVVRAAIEHSITFDRAQRLYTMGPVFRHE-RPQKG--RYRQ 130

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSH-EFIV 212
           F      +   +          M     R++   GL+ I +   S G     L+H E ++
Sbjct: 131 FHQLSVEAMGFSGPDVDAEQIIMLA---RLWGTFGLEDIHLEINSLGQPNERLAHREALI 187

Query: 213 LADTGETQVFCSKDFMDFPIP------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   V                  ++N D   + +    +  +    +       + 
Sbjct: 188 KHLEANIDVLDDDAKRRMYSNPLRVLDTKNPDMQSMANEAPKLFDYLGEESKAHFDELKI 247

Query: 267 LFDSLPENKR---VSARGIEVG--HIFYFGTKYSLPMSATFKGA----------DGKDHY 311
             D      R      RG++     +F + T  SL   AT  G            GK   
Sbjct: 248 RLDEAGIKYRINPRLVRGLDYYNLTVFEWVTG-SLGAQATVCGGGRYDGLFELLGGKPTP 306

Query: 312 VQMGSYGIGAMRVVAAVI-ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                + IG  R+++ +I +S +      + D     ++  I+    +      C K+  
Sbjct: 307 CV--GFAIGLERLISLIISDSKNAEIKSKFTDIGQETQVYFIH---QNSEAARKCSKLAE 361

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG------ 424
                G DV      +   +QF  AD  G    +I+G   + +  V +K           
Sbjct: 362 LCRNSGIDVIVHAGSQNFKNQFKRADFSGANYAIIIGESELQNDTVSLKQLRPNPDGSSI 421

Query: 425 IREDMSLEEVINYASHRFSNN 445
            +  +   +V+       +  
Sbjct: 422 EQITIPSSDVVVNLLKLINKK 442


>gi|19703643|ref|NP_603205.1| histidyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|32130122|sp|Q8RGJ5|SYH_FUSNN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19713757|gb|AAL94504.1| Histidyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 413

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 130/414 (31%), Gaps = 51/414 (12%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+    G   D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     FY     FR E RP+ G  R REF       F       
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYE-RPQAG--RQREFNQIGLEVFGEKSPKV 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----------HEFIVLADTGETQ 220
                 +     +   +LG+  + ++  S  +G   S          H    L D  E  
Sbjct: 141 DAEVIAIG---YKFLEKLGITDLEVKINS--VGSKASRTVYREKLIEHFKSHLDDMCEDC 195

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
                      +  +     D       +  +            +K  D           
Sbjct: 196 RDRINRNPLRLLDCKVDGEKDFYKSAPSIIDYLFEDERKHYDDVKKYLDIFGIKYTEDPT 255

Query: 280 --RGIEVG--HIF-----YFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAA 327
             RG++     +F       G++ ++     +       G      +G +  G  R++  
Sbjct: 256 LVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVG-FATGVERIMM- 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E ++            P     + I    +   +   KI   L      V+ D   + 
Sbjct: 314 LLEENY------------PKNTPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEK- 360

Query: 388 IGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            G +     AD L     VI+G    +   V +K   T  ++++ +EE+INY  
Sbjct: 361 -GMKSHMKKADKLETRYCVILGEDEFNKGIVLLKDFSTREQKEIKIEEIINYIK 413


>gi|321311056|ref|YP_004193385.1| seryl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319802900|emb|CBY93546.1| seryl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 404

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +  +  +E    G  E  +P L ++D  + + +   + +++ +
Sbjct: 146 GSGYVVYTGEGARIFRALIRLTLDENASKGYSERYLPVLVNSDCLLGTAQLPKFEEDLFK 205

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
           ++D         PT E  + +++R+ I     LP         FR E         GV+R
Sbjct: 206 VSD----DKYLSPTSETQLVNLYRNRIVEASELPIKLTANTNCFRREAGSAGVDTAGVIR 261

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   +   F   PE S      M      I  +L L    ++     I
Sbjct: 262 LHQFNKTEIVVF-CKPEESYEWLQVMVKDACSILEKLNLPYRVLQLAQNDI 311


>gi|300788441|ref|YP_003768732.1| glycyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299797955|gb|ADJ48330.1| glycyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 462

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 120/372 (32%), Gaps = 74/372 (19%)

Query: 92  EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            M+       +      A +   T + +  +       S +  PF   QI   FR+E+ P
Sbjct: 141 NMMLKTYLGPVESEEGLAYLRPETAQGIFVNFSNVQTTSRKKPPFGIGQIGKSFRNEITP 200

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
              + R+R                    + +M +                          
Sbjct: 201 GNFIFRTR-------------------EFEQMEM-------------------------- 215

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF V  + GE + +      +      +         +    +    + A   V  E
Sbjct: 216 ---EFFV--EPGEDERWHQYWIDERTKWYTDLGIKADNLRHYEHPKEKLSHYAKRTVDIE 270

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKG-ADGKDHYVQMGSYGIGAMR 323
             F      +     GI     F   T  +      +F   A G+ +   +     G  R
Sbjct: 271 YRFAFNAGQEWGELEGIANRTDFDLTTHSNHSGQDLSFFDQASGQRYRPFVIEPAAGVGR 330

Query: 324 VVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + A +  S+  +              +     ++PFK++++ + + +       +++ A
Sbjct: 331 SMMAFLVDSYVEEEVPNAKGGTDTRVVLRLDPRLSPFKVAVLPL-SRNADLTPKAKEVAA 389

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   +V +DD    IG ++   D +G P  V V    + D  V ++ R +  +E ++
Sbjct: 390 TLRKHW-NVDFDDAQA-IGRRYRRQDEIGTPYCVTVDFDSLEDQAVTVRERDSMSQERIA 447

Query: 431 LEEVINYASHRF 442
           ++++ +Y + R 
Sbjct: 448 IDKLESYLAGRL 459


>gi|167765169|ref|ZP_02437282.1| hypothetical protein BACSTE_03555 [Bacteroides stercoris ATCC
           43183]
 gi|167696797|gb|EDS13376.1| hypothetical protein BACSTE_03555 [Bacteroides stercoris ATCC
           43183]
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 117/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKESHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++      T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRTAEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|160890213|ref|ZP_02071216.1| hypothetical protein BACUNI_02653 [Bacteroides uniformis ATCC 8492]
 gi|270294260|ref|ZP_06200462.1| seryl-tRNA synthetase [Bacteroides sp. D20]
 gi|317481474|ref|ZP_07940540.1| seryl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860601|gb|EDO54032.1| hypothetical protein BACUNI_02653 [Bacteroides uniformis ATCC 8492]
 gi|270275727|gb|EFA21587.1| seryl-tRNA synthetase [Bacteroides sp. D20]
 gi|316902384|gb|EFV24272.1| seryl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 117/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++      T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRTAEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|217316821|gb|ACK37816.1| putative glutamyl-prolyl tRNA synthetase [Lepidophthalmus
           louisianensis]
          Length = 134

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  + K   +V   S+G+   R +  ++    D KG+
Sbjct: 17  RAIQGATSHHLGQNFSKMXEIVFEHPETKQKEFVYQNSWGLT-TRTIGVMVMVHGDNKGL 75

Query: 339 IWPDSVAPFKISLINI----KAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE 386
           + P  VA  ++ ++ +    K  DQ      DAC K+   L+        D    
Sbjct: 76  VLPPQVACVQVVIMPVGITAKTTDQEKLNLIDACNKLAEELNANEIRARCDLRDH 130


>gi|126642757|ref|YP_001085741.1| seryl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|126388641|gb|ABO13139.1| seryl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 278

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 12/202 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E  VP L +AD    +G+   + +++ +L    +K   
Sbjct: 25  ARLQRALTQFMLDTHTLKNGYTEAYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYY 82

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 83  LIPTAEVPVTNFVRDEIIDADRLPLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMV 142

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S  +  ++      I   LGL    +    G +G   +     E  V +   
Sbjct: 143 QI-VKPETSMQALEELTAHAEGILQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNT 201

Query: 218 ETQVFCSKDFMDFPIPSENTDF 239
             ++    +  DF        +
Sbjct: 202 YREISSCSNMGDFQARRMKARY 223


>gi|295394795|ref|ZP_06805010.1| glycyl-tRNA synthetase beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972391|gb|EFG48251.1| glycyl-tRNA synthetase beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 458

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 115/351 (32%), Gaps = 66/351 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
               P   + +   F + +  + R  PF   Q+   FR+E+ P   + R+REF   +   
Sbjct: 156 HYLRPETAQGIFVNFNNVVTAARRKPPFGIGQVGKAFRNEITPGNFIFRTREFEQMEIEY 215

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F   P+ ++  +++   +    F  LG            I  D   +F V AD  E   +
Sbjct: 216 F-THPDDAQKYFDEWVDACWNWFVDLG------------INPDNMRKFDVPAD--ERAHY 260

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                           F    +    +             H E     L    + +    
Sbjct: 261 SDATI------DLEYKFGFQGNPWGELMGVANRTDFDLSNHTEASGAKLQYFDQAT---- 310

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----- 337
                   G +Y+                  +     G  R + A +  ++         
Sbjct: 311 --------GDRYT----------------PYVIEPSFGLTRSMMAFLVDAYSEDEAPNTK 346

Query: 338 --------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                   +     +AP K +++ + + ++        + A L K   ++ +DD G  IG
Sbjct: 347 GGTDKRIVLKLDPRLAPVKAAVLPL-SRNEKLSPQARALAANLRK-RWNIDFDDAGA-IG 403

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            ++   D +G P  +      + D+ V ++ R    +E +++++V NY + 
Sbjct: 404 RRYRRQDEIGTPFCITFDFDSLDDNAVTVRKRDDMSQERIAIDDVENYLAQ 454


>gi|77164549|ref|YP_343074.1| seryl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|254433480|ref|ZP_05046988.1| seryl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|123594620|sp|Q3JCA2|SYS_NITOC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|76882863|gb|ABA57544.1| seryl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207089813|gb|EDZ67084.1| seryl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 427

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 89/257 (34%), Gaps = 22/257 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQ-N 62
           P L+  P+D       L    GM  + +    G      +G   +    +   + +    
Sbjct: 130 PALEFVPKDHVDLGASL----GMDFETAVKLSGTRFVTLIGPLAQLHRALIQFMLDVHTR 185

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+ VP L + +  V +G+   + + +  + D         PT E  +T++ R  I
Sbjct: 186 EHGYTEVYVPYLANRESLVGTGQLPKFEEGLFAIRDTG---YYLIPTAEVPVTNLVRGEI 242

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                LP  +      FR E     +   G++R  +F   +     + PE S+ ++  + 
Sbjct: 243 LLAERLPLKYVAHTPCFRSEAGSYGKDTRGMIRQHQFEKVELVQI-VPPEVSQQAHEDLT 301

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPS 234
                I  RLGL    M   +G +G   S     E  +       ++    +F+DF    
Sbjct: 302 GHAEAILQRLGLPYRVMNLCAGDLGFASSKTYDLEVWLPGQQTYREISSCSNFLDFQARR 361

Query: 235 ENTDFDDIISLNSIVEQ 251
               + D  +       
Sbjct: 362 IQARWRDPKTQKPAWVH 378


>gi|163846039|ref|YP_001634083.1| seryl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222523768|ref|YP_002568238.1| seryl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|189083562|sp|A9WE34|SYS_CHLAA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783017|sp|B9LIV1|SYS_CHLSY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|163667328|gb|ABY33694.1| seryl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222447647|gb|ACM51913.1| seryl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 423

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 10/183 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    V   + +     G  E+  P +    +   SG+   +   + R   
Sbjct: 162 FYVMRGAGARLQRAVIQWLIDLHLEQGYQEVYTPFVVKESVLWASGQLPKFRDNLYR--- 218

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T ++   I     LP         FR E     R   G+ R  +
Sbjct: 219 DEESGLWLVPTAEVPLTSLYADEILDASQLPIYHVAYTPCFRKEQLSAGRDVRGIKRGHQ 278

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIV 212
           F   + Y F +TP+ S  +  K+         RLGL        +G    G   +++  V
Sbjct: 279 FDKVEMYMF-VTPDQSYQALEKLRRDAEECARRLGLPFRTKLLCTGDLGFGSTKTYDIEV 337

Query: 213 LAD 215
            A 
Sbjct: 338 WAP 340


>gi|189426285|ref|YP_001953462.1| seryl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|238692147|sp|B3EAQ9|SYS_GEOLS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189422544|gb|ACD96942.1| seryl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 423

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 13/194 (6%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    + + + +      G  E+  P + +      +G+   + +++ RL D      
Sbjct: 168 GARLERALISFMLDLHSTEHGYTEVLPPFMVNRASMTGTGQLPKFEEDLFRLMDP---EY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP ++      FR E     +   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRDEILKKSDLPISYTAYTPCFRREAGSYGKDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F + P+ S+    K+     ++   L L    M   SG IG         E  + +  
Sbjct: 285 VKF-VHPDESQAELEKLTGHAEKVLQLLELPYRVMALCSGDIGFSACKTYDLEVWLPSQN 343

Query: 217 GETQVFCSKDFMDF 230
              ++     F DF
Sbjct: 344 TYREISSCSSFGDF 357


>gi|262161299|ref|ZP_06030410.1| histidyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262168792|ref|ZP_06036487.1| histidyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262022910|gb|EEY41616.1| histidyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262029049|gb|EEY47702.1| histidyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
          Length = 412

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 146/430 (33%), Gaps = 54/430 (12%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 5   LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++   P   E      RS I++          + +   FR E RP+ G  R R+F   
Sbjct: 65  GDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG--RYRQFHQC 118

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
               F L           M     R++  LG+ +  +R E   IG   +      A    
Sbjct: 119 GVEVFGLDGPDVDAELIMM---TARLWRELGI-AQHVRLELNSIGSLEARANYRTALIDY 174

Query: 219 TQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            + + +    D            + S+N D   I+     +  +    +        +L 
Sbjct: 175 LEQYQNVLDEDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELL 234

Query: 269 DSLPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA----------DGKDHYVQ 313
           D+        +   RG++     +F + T+ SL    T  G            GK     
Sbjct: 235 DAAGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQLGGKPTPAV 293

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              + +G  R+V  ++E+  +             +   + +    +    A  K+  +L 
Sbjct: 294 --GFAMGLERLVL-MMETLGNTD---------VRRSVDVYMVTAGEGTMMAGMKLAEQLR 341

Query: 374 KV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +   G  V     G     QF  AD +G  + +++G   V+   V +K    G +  ++ 
Sbjct: 342 EQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGEQNTVAQ 401

Query: 432 EEVINYASHR 441
            EV    +H 
Sbjct: 402 AEVAKLLAHL 411


>gi|331002910|ref|ZP_08326423.1| glycyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413203|gb|EGG92577.1| glycyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 462

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 153/444 (34%), Gaps = 54/444 (12%)

Query: 40  YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + +  LG +  +NV        I+E     G   +    L +   W+ SG   S+   ++
Sbjct: 32  WDYGNLGVELKNNVKAAWWQKFIKESPYNVG---VDCAILMNPQTWIASGHLGSFSDPLM 88

Query: 95  RLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
              + +++     +I    HE  +         S   +     +  ++     +  F  +
Sbjct: 89  DCKECHERFRADKIIEDYMHENGIVTEGSVDAWSNEEMKKYIEEHNIECPTCGKHNFTDI 148

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPIGG 204
           R  +F +    +F    E +K+       +   IF  +  K++       +    G +G 
Sbjct: 149 R--QFNLM-FKTFQGVTEDAKNVVYLRPETAQGIF--VNFKNVQRTSRKKVPFGIGQVGK 203

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +E      T  T+ F   +   F  P  + ++ D      I    +           
Sbjct: 204 SFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFDYWRSYCINWLTSLGIREDQMRLR 263

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMS--------ATFKGADGK 308
           +   + L      +   IE    F +G        T Y L             F     +
Sbjct: 264 DHDKEELSFYSNATTD-IEFLFPFGWGELWGIADRTDYDLNRHQEVSGQDLTYFDDETSE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGK---------GIIWPDSVAPFKISLINIKAHDQ 359
            +   +    +GA RV  A + +++D +          + +  ++AP KI ++ +     
Sbjct: 323 RYIPYVIEPSLGADRVTLAFLCAAYDEEILEGGESRTVLRFHPALAPVKIGILPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   KI   LSK   +V +DD G  IG ++   D +G P  +       +D+ V ++
Sbjct: 381 -LNEGALKISEELSKY-YNVEFDDRGN-IGKRYRRQDEIGTPFCITYDFDSENDNAVTVR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R +  +  + + E+ NY   +F 
Sbjct: 438 DRDSMEQVRIPIAELKNYFEDKFR 461


>gi|304437075|ref|ZP_07397038.1| histidine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370026|gb|EFM23688.1| histidine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 421

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 123/429 (28%), Gaps = 25/429 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP    A  +V  +IR+   R G  E+  P  +  +L+        D 
Sbjct: 1   MLTNAPRGTKDILPDAVGAWTHVEHVIRDLCARYGYGEIRTPIFEHTELFQRGIGDGTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRF 147
             KEM   +DR D+++   P +       +    K Y +      + I   FR + RP+ 
Sbjct: 61  VDKEMYTFSDRGDRSLTLRPENTASAVRAY-LQNKLYADGGLQKLFYIGSMFRYD-RPQA 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R REF      +              +   +L +               G       
Sbjct: 119 G--RMREFHQFGVEALGEESPALDAEVILLAYDFLTV--LGLTGLTLKLNSVGCPACRPV 174

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +   + A   E       D  D    S     D                         + 
Sbjct: 175 YRERLQAYFKEYLPTLCDDCKDRYTRSPLRILDCKRDAEQPFMTGAPAITDCLCPACTEH 234

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRV- 324
           F+ + ++   +    E+      G  Y         +     +      G Y      + 
Sbjct: 235 FEQVQQHLTAAGVSYELDPRLVRGLDYYTRTAFEIAYPPLGAQSAVAGGGRYDGLVEELG 294

Query: 325 --------VAAVIES--SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                    AA +E       +  + P  V P    +  I   D   + A   +   L  
Sbjct: 295 GNPTPAVGFAAGLERVLLALEQQNLLP--VQPPAADVFLIALGDAAAK-AAFPLLHELRH 351

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G     D  G  + +Q   A+  G    VI+G   ++     ++      +E  +L+++
Sbjct: 352 GGVRALMDYAGRSMKAQMKQANRSGARYAVILGEDELAAHTALVRDMAESAQETCALDDL 411

Query: 435 INYASHRFS 443
           +        
Sbjct: 412 VEKMISEVK 420


>gi|328543816|ref|YP_004303925.1| Seryl-tRNA synthetase [polymorphum gilvum SL003B-26A1]
 gi|326413560|gb|ADZ70623.1| Seryl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 426

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 16/214 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  GQ A     +   + +      G  E++ P L  AD    + +   + +++
Sbjct: 162 SGSRFVLLKGQLARLERALGQFMLDLHTGEHGYTEVAPPLLVRADALYGTSQLPKFEEDL 221

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            + +  +       PT E  +T++    I    +LP     +   FR E     R   G+
Sbjct: 222 FKTSSDH----YLVPTAEVPLTNMVAGEILGEGDLPLRVSALTHCFRSEAGSAGRDVRGM 277

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F+  +  S    PE S     +M      +  +LGL    +   +G +G      
Sbjct: 278 LRQHQFVKCELVSV-TRPEDSLSELERMLGCAETVLQKLGLHYRVVTLCTGDMGFASQKT 336

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E  +       ++       DF     N  +
Sbjct: 337 YDIEVWLPGQNAYREISSCSVCGDFQARRMNARY 370


>gi|309805100|ref|ZP_07699153.1| serine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165554|gb|EFO67784.1| serine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 406

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E  + G  E+  P L + D    +G++  + +++  + D
Sbjct: 133 FVYYKGAGALLERAVFNFFLDENVKAGYTEVIPPYLVNYDSMQGTGQFPKFTEDVYTIVD 192

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I   + LP     +   FR E     R   G++
Sbjct: 193 NDDPDKPRELTLIPTAEVPLVNYFRDKILDIKQLPINVTAMSPAFRSEAGSAGRDTRGLI 252

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        + S    +K+  +   +  +L L    +   +G      +   
Sbjct: 253 RMHEFRKVEMVKI-CDEDSSWQELDKLTKNAEHLLQKLELPYHVVALSTGDASFTSAKTY 311

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             E  + A     ++    +  DF        + D
Sbjct: 312 DLEVWMPAQNQYREISSCSNCTDFQARRSLIRYRD 346


>gi|209522691|ref|ZP_03271249.1| seryl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209496740|gb|EDZ97037.1| seryl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 431

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G +E+  P L ++     +G+   + +E  + AD +   + 
Sbjct: 174 GAALERALVQFMLDTHTANGYLEVIPPLLVNSISLTATGQLPKFAEESFKCADDD---LW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +++R  I     LP         FR E     +   G++R  +F   +  
Sbjct: 231 LIPTSEVPVVNLYRDEILESEQLPIYHCSFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 290

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+  + K+      I   L L    +   +G +G   +     E  + +   
Sbjct: 291 KL-VHPETSELEHEKLVADAEGILQALKLPYRVIELCTGDLGFAAAKCYDLEVWLPSAGT 349

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     N  F +   
Sbjct: 350 YREISSCSNVKDFQARRANIRFREAKG 376


>gi|149030653|gb|EDL85690.1| threonyl-tRNA synthetase-like 1, isoform CRA_b [Rattus norvegicus]
          Length = 186

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLG 399
           P  ++PF++ +I ++   +   D   ++   L   G     D D G  +  +   A L  
Sbjct: 76  PLWLSPFQVVVIPVRTEQE---DYARQVQQCLQAAGLVSDLDADCGLTLSRRVRRAQLAH 132

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +  Q +VG +  S   V ++ R      +  L E +           P
Sbjct: 133 YNFQFVVGQREQSQMSVNVRTRDNRQLGERGLAESVQRLLELQDARVP 180


>gi|150399970|ref|YP_001323737.1| glycyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|166227937|sp|A6URK3|SYG_METVS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|150012673|gb|ABR55125.1| glycyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 574

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 6/144 (4%)

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK----GIIWPDSVAPFKISLINIKAHD 358
           K   G+     +     G  R+   VIE +   +     + + ++V+P K+ +  +  + 
Sbjct: 433 KNVTGEKIVPHVIEPSYGIDRITYCVIEHAFKEEDDRTLLAFVNTVSPVKVGVFPL-VNK 491

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +  E +  +  K G    +DD G  IG ++   D +G P  V V  + + D+ V I
Sbjct: 492 EGMDEIAENLKNKFRKNGIIAEYDDSGA-IGRRYMRMDEIGTPFCVTVDGETLKDNTVTI 550

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R +  +  + L+ V++Y   + 
Sbjct: 551 RERDSREQFRIPLDGVVDYIKEKL 574



 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 63/190 (33%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESG----------- 84
            G + + PLG     +V    R+      G  E+  PT+   ++   SG           
Sbjct: 28  AGFFDYGPLGAILKSSVINTWRKHYIINEGFYEIDSPTVNPYEVLKASGHVENFTDPLVE 87

Query: 85  --------RYDSYGKE----------------------------------------MLRL 96
                   R D   +E                                        M   
Sbjct: 88  CKSCLESFRADHIIEENIEVDTEGKTLNELQEMIEKNNIKCPKCGGEFKEVNTFNLMFAT 147

Query: 97  A--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
           +      +A    P   + +   F+   + +RN LP+   QI   +R+E+ PR GV+R R
Sbjct: 148 SIGPGGKRAAFMRPETAQGIFIQFKRISQFFRNKLPYGAVQIGKAYRNEISPRQGVIRLR 207

Query: 154 EFLMKDAYSF 163
           EF   +A  F
Sbjct: 208 EFTQAEAEFF 217


>gi|152967313|ref|YP_001363097.1| glycyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|151361830|gb|ABS04833.1| glycyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 462

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 140/446 (31%), Gaps = 64/446 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+      +   +    + +    +    +W  SG  + +     E L
Sbjct: 35  WDYGPLGVELKENIKRQWWRQMVSSRDDVVGLDSSVILPRRVWEASGHVEVFSDPLVESL 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD---ELRPRFGVMR 151
           +   R     +               H     N        +   R    E R   G+M+
Sbjct: 95  QTHKRYRADHLLEAYE--------AKHGHPPVNGLADVPDPETGVRGQWTEPRDFSGLMK 146

Query: 152 SREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +    + +      L PE ++     +FV++  +   +G          G IG    +E 
Sbjct: 147 TYLGAVDNEEGLHYLRPETAQ----GIFVNFANV---MGSARKKPPFGIGQIGKSFRNEI 199

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P  +  +        +         A +    E     
Sbjct: 200 TPGNFIFRTREFEQMEMEFFVEPGTDEQWHQYWLDERMSWYTGLGIDAGNLRFFEH---P 256

Query: 271 LPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKD 309
             +    S R +++ + F F              T Y L   +   G D        G+ 
Sbjct: 257 QEKLSHYSKRTVDIEYRFGFQGSEWGELEGIANRTDYDLSTHSRESGVDLSYFDQTKGER 316

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKA 356
               +     G  R + A +  ++                 +     +AP K ++  + +
Sbjct: 317 WIPYVIEPAAGLTRSLMAFLVDAYTEDEAPNTKGGVDKRTVLRLDHRLAPVKAAVFPL-S 375

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            ++        + A L +   +V +DD G  IG ++   D +G P  + V    + D  V
Sbjct: 376 RNEQLSPKARDLAAELRR-NWNVEFDDAGA-IGRRYRRHDEVGTPYCITVDFDTLEDEAV 433

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            I+ R T  +E + L +V ++   R 
Sbjct: 434 TIRERDTMAQERVGLTQVTSWLGARL 459


>gi|26990705|ref|NP_746130.1| seryl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|38258319|sp|Q88FT2|SYS_PSEPK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|24985698|gb|AAN69594.1|AE016593_2 seryl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 426

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P +  A     +G+   + +++ ++    +    
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEHYTPYMVQAPALQGTGQLPKFEEDLFKITREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I   + LP         FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNLVAGEILDAKQLPLKLVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  R+   L L    +   +G +G         E  V +   
Sbjct: 290 QV-VEPSKSMEALEGLTANAERVLQLLELPYRVLALCTGDMGFGAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|329957008|ref|ZP_08297576.1| serine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328523765|gb|EGF50857.1| serine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 424

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 117/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKESHQEMLN 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++      T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRTAEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|260582539|ref|ZP_05850329.1| histidyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260094350|gb|EEW78248.1| histidyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 423

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 141/428 (32%), Gaps = 49/428 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F    A 
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGAE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+ ++  +  E  V      +D   P       D            +             
Sbjct: 187 HQDLMSDEEKERLVRNPLRILDTKNPE-LQKVLDNAPKLLDYLDDESREHFEQLCSLLDA 245

Query: 268 FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
            D   E      RG++     +F       G + ++     + G       H      + 
Sbjct: 246 VDIQYEINPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFA 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKV 375
           +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L   
Sbjct: 306 MGLERLVLLVQEVN-----PNVPVKSA---VDIYVVYQGEGTTLAAFELAEKVRSELP-- 355

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEV 434
             +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  V
Sbjct: 356 HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGADQQTLDLVNV 415

Query: 435 INYASHRF 442
           I+Y   +F
Sbjct: 416 IDYIQTQF 423


>gi|167569733|ref|ZP_02362607.1| histidyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 446

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 139/451 (30%), Gaps = 77/451 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYVGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +   S           + L
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINS-----------LGL 176

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLP 272
           A+           +++  +   + D    +  N +    T   A    V N     D L 
Sbjct: 177 AEERAAHRVELIKYLEQHVAQLDDDAQRRLYTNPLRVLDTKNPALQEIVQNAPKLIDFLG 236

Query: 273 ENKRVSARGIEV-----GHIFYFGTK-------YSLPMSATFKGADGKD----------- 309
           +  R    G++         F    +       Y+L +        G             
Sbjct: 237 DASRAHFEGLQKLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDP 296

Query: 310 -------HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQV 360
                         + +G  R++  + E            S+ P +  + +  +   D  
Sbjct: 297 LIEQLGGKPTAACGWAMGVERILELLKEE-----------SLVPEQEGVDVYVVHQGD-A 344

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKV 416
            R+    +  RL   G DV      +  G+ F      AD  G    VI G   +++   
Sbjct: 345 AREQAFVVAERLRDTGLDVVLHCSADGAGASFKSQMKRADASGAAFAVIFGEDEIANGTA 404

Query: 417 EIK-HRLTG------IREDMSLEEVINYASH 440
            +K  R  G      +++ + +E + ++  +
Sbjct: 405 SVKPLRGMGAEGEKNVQQSVPVESLTDFLIN 435


>gi|157813070|gb|ABV81280.1| putative bifunctional aminoacyl-tRNA synthetase [Speleonectes
           tulumensis]
          Length = 134

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  +V   S+GI   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPETQERKFVYQNSWGIT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++             +   D+C ++       G     D       
Sbjct: 74  GLVLPPRVASIQVIVVPCGITASSTAEDRKTLMDSCRELERAFVAAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|325524775|gb|EGD02749.1| histidyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 446

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 139/442 (31%), Gaps = 59/442 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +       +      M     R++  LGL  I +          RA      
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F+ + D  E             + ++N    +I      +  +    +      
Sbjct: 188 IKYLEQFVDVLD--EDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFEG 245

Query: 264 NEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHY 311
            ++L  +     +      RG++     +F       G + ++     +           
Sbjct: 246 LQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKP 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIY 369
                + +G  R    ++E   +         +AP +  + +  +    +  R+      
Sbjct: 306 TAACGWAMGIER----ILELLKEED-------LAPEQEGVDVYVVHQG-EAAREQAFIAA 353

Query: 370 ARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
            RL   G DV +    D       SQ   AD  G    VI G + V++  V +K  R  G
Sbjct: 354 ERLRDTGLDVIFHCSADGGPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAG 413

Query: 425 I------REDMSLEEVINYASH 440
                  ++ + +E +  +  +
Sbjct: 414 EEGEKNVQQTVPVESLTEFLIN 435


>gi|24374822|ref|NP_718865.1| histidyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|32130107|sp|Q8EC33|SYH_SHEON RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|24349508|gb|AAN56309.1|AE015769_5 histidyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 425

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 148/437 (33%), Gaps = 48/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V A++R      G  E+  P +++ DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKVEAVLRSSVAAYGYSEIRTPIVENTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       + +           + +   R++ +LG+    +  E   +G        
Sbjct: 122 YRQFHQFGVEIYGIGSADIDAE---VLMLSARLWEKLGITE-HVTLELNTLGDPAERAAY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + S++     I++    +  +    ++   
Sbjct: 178 REALIAFLEQHKDKLDEDSQRRMYSNPLRVLDSKDPQVQSILADAPALMDYLGEESSQHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG----ADG 307
               +L D++    R      RG++     +F       G++ ++     + G      G
Sbjct: 238 AQLRELLDAVGIQYRVNSRLVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRYDGLVAQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+       + +G  R+V  ++E+    + I       P ++ +      D    +A  K
Sbjct: 298 KETPAV--GFAMGLERIVL-LLETLALTQDI-------PAEVDVYVAAMGDNCLVEAI-K 346

Query: 368 IYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG 424
           +   L        V     G  +  Q   AD  G  + +++G + +++  V +K+ R   
Sbjct: 347 VAQELRSALPTLRVMSHCGGGNLKKQMKRADKSGAQVALLIGEEELAEGVVTVKYLRNDN 406

Query: 425 IREDMSLEEVINYASHR 441
            ++ ++   +  + +  
Sbjct: 407 EQQRVARNALSAFLAEL 423


>gi|217316849|gb|ACK37830.1| putative glutamyl-prolyl tRNA synthetase [Ebalia tuberculosa]
          Length = 134

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  + K+  +    S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETKEKQFAYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  L+ +        A       AC  + A L   G     D   
Sbjct: 74  GLVLPPHVASVQAILMPVGITAKTTEAEKAALYQACRDLEAELKADGVRAKSDLKD 129


>gi|209695311|ref|YP_002263240.1| seryl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|238065094|sp|B6ENN5|SYS_ALISL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|208009263|emb|CAQ79529.1| seryl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 435

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 87/246 (35%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +      G +E
Sbjct: 135 DFEVRDHVALGELADGLDFASAVKISGSRFIVMKGQFARLHRALSQFMLDLHTEEHGYME 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L + D    +G+   +G+++        +++D   K +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNHDSLYGTGQLPKFGEDLFHTSPLTEQVSDVPLKMLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITEEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSRKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|197284595|ref|YP_002150467.1| seryl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227356777|ref|ZP_03841162.1| seryl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|238693172|sp|B4EV93|SYS_PROMH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194682082|emb|CAR41638.1| seryl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227163067|gb|EEI48002.1| seryl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 429

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   +      + G  E
Sbjct: 133 DFELKDHVTLGELTDGLDFPSAVKITGSRFVVMKGQIARLHRAIAQFMLNLHTEQHGYQE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           M VP L +      +G+   +  ++     L + ++      PT E  +T++ R  I   
Sbjct: 193 MYVPYLVNHATLYGTGQLPKFSGDLFHTKPLEEESESQYALIPTAEVPVTNMVRDVILEE 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP         FR E     R   G++R  +F   +     + PE S  +  ++    
Sbjct: 253 DELPLRMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VHPEKSMDALEELTGHA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            ++   L L    +   +G +G         E  V A     ++    +  DF       
Sbjct: 312 EKVLQLLNLPYRKVVLCTGDMGFGARKTYDLEVWVPAQNTYREISSCSNCWDFQARRMQA 371

Query: 238 DF 239
            F
Sbjct: 372 RF 373


>gi|323141849|ref|ZP_08076713.1| serine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413689|gb|EFY04544.1| serine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 426

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 13/209 (6%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             +  +G +    V     +    + G  E   P + +      +G+   + ++M +L  
Sbjct: 163 VFYRGMGSRLERAVINFFLDVHTRKHGYTEFFPPFIVNGASMQGTGQLPKFAEDMYKL-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  M   PT E  +T+  R  I +   LP  +      FR E     R   G++R  +
Sbjct: 221 -ENGDMYLIPTAEVPVTNYHRDDILTGDELPLKYTAYSACFRAEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE S    +K+      +   LGL    +R  +G +G   +     E 
Sbjct: 280 FNKVELVKF-TKPEESWAELDKLTNDAEEVLQLLGLPYHVVRLCTGDLGFSSATTYDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDF 239
            + A     ++    +F+DF     N  F
Sbjct: 339 WLPAANCYREISSCSNFLDFQARRANIRF 367


>gi|239931399|ref|ZP_04688352.1| glycyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291439772|ref|ZP_06579162.1| glycyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291342667|gb|EFE69623.1| glycyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 460

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 148/444 (33%), Gaps = 60/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++      L 
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGIDSSVILAPEVWVASGHVATFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSY--RNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
           +       +   H E   +  + H       +L       +  F  E +   G++ +   
Sbjct: 90  ECTSCHKRFRADHLEEAYEEKKGHAPENGLADLNCPNCGNKGTF-TEPKQFSGLLSTHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                     L PE ++     +F ++ ++                 +G    +E     
Sbjct: 149 PTQDSGSIAYLRPETAQ----GIFTNFAQVQTT---SRRKPPFGIAQMGKSFRNEITPGN 201

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T+ F   +   F  P E+  + +       +EQ    Y           +   P+ 
Sbjct: 202 FIFRTREFEQMEMEFFVKPGEDEKWQEYW-----MEQRWNWYTGLGLREENMRWYEHPQE 256

Query: 275 K--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHY 311
           K    S R  ++ + F FG             T + L   +   G D        G+   
Sbjct: 257 KLSHYSKRTADIEYRFQFGGSEWGELEGVANRTDFDLGAHSKASGQDLSYFDQEAGERWT 316

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHD 358
             +     G  R + A +  ++                 +     +AP K++++ +  + 
Sbjct: 317 PYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGKLEKRTVLRLDHRLAPVKVAVLPLSRNP 376

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      + +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V +
Sbjct: 377 E-LSPKAKGLAQALRQ-NWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTV 433

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +E +SL+++  Y + R 
Sbjct: 434 RERDTMKQERISLDQIEGYLAARL 457


>gi|227552625|ref|ZP_03982674.1| histidine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257896962|ref|ZP_05676615.1| histidyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293378682|ref|ZP_06624841.1| histidine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|227178251|gb|EEI59223.1| histidine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257833527|gb|EEV59948.1| histidyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|292642722|gb|EFF60873.1| histidine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 430

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 134/437 (30%), Gaps = 35/437 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSFQRPKGTNDILPGESEKWQFVEETARLLFRDYQYNEIRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPR 146
             KEM    D+ ++ +   P     +   F  H         PF  + +   FR E RP+
Sbjct: 61  VSKEMYDFYDKGERHVTLRPEGTAPIVRSFVEHKLFGPEYAKPFKTFYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESG 200
            G  R R+F      +F    E        M ++ L  F +LG+  I +        ++ 
Sbjct: 120 KG--RLRQFHQIGVEAFGS--ENPATDVESMVMA-LDFFKQLGITQIRLVINSLGDKDTR 174

Query: 201 PIGGDLSHEF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   ++     A+  E       +     + S++      ++    +  + +  A 
Sbjct: 175 QAYRQALIDYLLPFEAELSEDSKRRLHENPLRVLDSKDKRDQKFVADAPSILDYLSEPAQ 234

Query: 259 TSDVHNEKLFDS---LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                   + D+     E      RG++    +Y  T + +   A   GA  +      G
Sbjct: 235 KHFDTVVSMLDALAVPYEIDSNMVRGLD----YYTHTIFEIMSDAPKMGA--QATICAGG 288

Query: 316 SYGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDA-------CEK 367
            Y      +            GI     ++   ++ +      D               K
Sbjct: 289 RYDNLVEELGGPSTPGFGFAMGIERLLLTMEAEEVVIPAFNELDAYVVALGDETNIEALK 348

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   +   G     D M  +  +QF  AD     L +++G   ++   + +K   +   +
Sbjct: 349 VVQAIRNFGFSADRDFMNRKAKAQFKTADKANAKLVLVIGEDELASQTINVKAMASRKEK 408

Query: 428 DMSLEEVINYASHRFSN 444
              LEE+  +    +  
Sbjct: 409 SFPLEEIYEHFDEVYDE 425


>gi|57168528|ref|ZP_00367661.1| seryl-tRNA synthetase [Campylobacter coli RM2228]
 gi|305432945|ref|ZP_07402103.1| serine--tRNA ligase [Campylobacter coli JV20]
 gi|57020033|gb|EAL56710.1| seryl-tRNA synthetase [Campylobacter coli RM2228]
 gi|304444099|gb|EFM36754.1| serine--tRNA ligase [Campylobacter coli JV20]
          Length = 411

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L ++     +G+   +  +M ++ D +   + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNSPTMFGTGQLPKFKDDMYKIEDED---LY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +  +LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILTSESLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  + +   
Sbjct: 283 SI-TKPEQSDSIFNEMVECASDLLSSLGLAHRHLMLCTGDLGFSAAKTIDLEVWIPSQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEKGKNELVH 374


>gi|328473158|gb|EGF44006.1| seryl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 435

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G  EM VP L ++D    +G+   +GK++
Sbjct: 160 TGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTEMYVPYLVNSDSLFGTGQLPKFGKDL 219

Query: 94  L-------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
                   ++ D   + +   PT E  +T++ R  I    +LP         FR E    
Sbjct: 220 FHTEPLAEKVNDEEPRKLSLIPTAEVPVTNLVRDTITDEADLPIKMTAHTPCFRSEAGSY 279

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +       PE S ++  ++     ++   L L    +   +G +
Sbjct: 280 GRDTRGLIRMHQFDKVELVQI-TKPEDSMNALEELTGHAEKVLQLLELPYRKVVLCTGDM 338

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G         E  V A     ++    +  DF        F
Sbjct: 339 GFGARKTYDLEVWVPAQETYREISSCSNMWDFQARRMQARF 379


>gi|293398677|ref|ZP_06642855.1| seryl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291611148|gb|EFF40245.1| seryl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 431

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVAGSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYGALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREISSCSNCEDFQAHRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385


>gi|145633678|ref|ZP_01789404.1| seryl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|229845506|ref|ZP_04465635.1| seryl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|144985438|gb|EDJ92259.1| seryl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|229811609|gb|EEP47309.1| seryl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 429

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|238795841|ref|ZP_04639354.1| Seryl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238720304|gb|EEQ12107.1| Seryl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 430

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 83/239 (34%), Gaps = 21/239 (8%)

Query: 12  QENPRDAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
           +    D E+  H  +     G+    +    G    +  GQ A     ++  + +    +
Sbjct: 128 EPRKYDFEVRDHVSLGEMAGGLDFAAAVKLTGARFVVMKGQVARMHRALSQFMLDLHTEK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFR 119
            G  E  VP L +      +G+   +G+++       +++        PT E  +T++ R
Sbjct: 188 HGYQEAYVPYLVNHATLYGTGQLPKFGEDLFHTKPLEEESDSSNYALIPTAEVPLTNLVR 247

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I    +LP         FR E     R   G++R  +F   +       PE S  +  
Sbjct: 248 DEILEEESLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-TRPEDSMAALE 306

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           ++     ++   L L    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 307 ELTGHAEKVLQLLELPYRKVLLCTGDMGFGSSKTYDLEVWLPAQNTYREISSCSNMWDF 365


>gi|262305719|gb|ACY45452.1| glu- + pro-tRNA synthetase [Craterostigmus tasmanianus]
          Length = 134

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+ G   + G  +S      F+     +  Y    S+G+ + R +  ++    D  
Sbjct: 15  SGRGIQGGTSHHLGQNFSKMFDIVFEHPESNEKEYAHQNSWGL-STRTIGVMVMVHADNS 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ +I         +          ++    L+K       D       
Sbjct: 74  GLVLPPRVACIQVVIIPCGITVSLPEEEKDALLKKVQEYEQLLTKENVRCKADFRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|223985700|ref|ZP_03635747.1| hypothetical protein HOLDEFILI_03053 [Holdemania filiformis DSM
           12042]
 gi|223962311|gb|EEF66776.1| hypothetical protein HOLDEFILI_03053 [Holdemania filiformis DSM
           12042]
          Length = 458

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 106/366 (28%), Gaps = 73/366 (19%)

Query: 93  MLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +     L D      +   T + +  +         R LPF   QI   FR+E+ P  
Sbjct: 150 MFKTFQGILEDAKSTIYLRPETAQGMFVNFKNVQRSMRRKLPFGIGQIGKSFRNEITPGN 209

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF   +   F    E  +  Y       +     LGL +              S
Sbjct: 210 FIFRTREFEQMEMEFFCKPGEDLQ-WYEYWKNFCMNWLTNLGLNA-------------ES 255

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             F       E   F SK   D                   +             H E  
Sbjct: 256 LRFREHTP--EELAFYSKGTSDIE--------YLFPFGWGELWGIADRTDYDLKTHQEHS 305

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
            +S                               +      + +        +G  R++ 
Sbjct: 306 GES-----------------------------LEYLDPQTNEKYLPYCVEPAVGVERLML 336

Query: 327 AVIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++AP K  ++ +           ++IYA+L+    
Sbjct: 337 AFLCDAYDEEVLNEKDTRVVLHLHPALAPVKACILPLSKQLSAS---AKEIYAQLADSFV 393

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              +D+ G  IG ++   D +G P  V +      D  V ++ R +  +  + + E+  +
Sbjct: 394 -CEYDEAG-SIGKRYRRQDAIGTPFCVTIDFDTEKDGCVTVRERDSMEQVRLPISELQAH 451

Query: 438 ASHRFS 443
                 
Sbjct: 452 IEASLK 457


>gi|148547068|ref|YP_001267170.1| seryl-tRNA synthetase [Pseudomonas putida F1]
 gi|166223272|sp|A5W1H6|SYS_PSEP1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148511126|gb|ABQ77986.1| seryl-tRNA synthetase [Pseudomonas putida F1]
          Length = 426

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P +  A     +G+   + +++ ++    +    
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEHYTPYMVQAPALQGTGQLPKFEEDLFKITREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I   + LP         FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNLVAGEILDAKQLPLKLVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  R+   L L    +   +G +G         E  V +   
Sbjct: 290 QV-VEPSKSMEALEGLTANAERVLQLLELPYRVLALCTGDMGFGAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|167562550|ref|ZP_02355466.1| histidyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 446

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 138/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYVGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +             ++    + L D+   
Sbjct: 182 AHRVELIKYLEQHVAQLDDDAQRRLYTNPLRVLDTKNPALQEIVQSAPKLIDFLGDASRA 241

Query: 274 NKRVSARGIEVGHIFYF-------GTK-YSLPMSATFKGADGKD---------------- 309
           +     + ++  ++ +        G   Y+L +        G                  
Sbjct: 242 HFEGLQKLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R++  + E            S+ P +  + +  +   D   R+  
Sbjct: 302 GGKPTAACGWAMGVERILELLKEE-----------SLVPEQEGVDVYVVHQGD-AAREQA 349

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
             +  RL   G DV      +  G+ F      AD  G    VI G   +++    +K  
Sbjct: 350 FVVAERLRDTGLDVVLHCSADGAGASFKSQMKRADASGAAFAVIFGEDEIANGTASVKPL 409

Query: 421 RLTG------IREDMSLEEVINYASH 440
           R  G      +++ + +E + ++  +
Sbjct: 410 RGMGAEGEKNVQQSVPVESLTDFLIN 435


>gi|321441325|gb|ADW85077.1| glu- + pro-tRNA synthetase [Pollanisus sp. JCR-2011]
          Length = 134

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
           S RG++     + G  +S      +   + ++       S+GI   R +  ++    D +
Sbjct: 15  SGRGVQGATSHHLGQNFSKMFEIVYDDPETQEKNYVFQNSWGIT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHDQVCRDAC-EKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++         A D+    A   ++   L   G     D       
Sbjct: 74  GLVLPPRVASVQVMIVPCGVTASSTAEDRAALYASGRELADTLLAAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|302877502|ref|YP_003846066.1| seryl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302580291|gb|ADL54302.1| seryl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 431

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 14/197 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRND 101
            +    +   + +   +  G  E+ VP L +AD    +G+   + +++     ++ +   
Sbjct: 170 ARLHRALAQFMLDTHTDTHGYTEVYVPYLVNADSMRGTGQLPKFEEDLFAVPRQMGEGGM 229

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           +     PT E  +T++ R  I     LP  +      FR E     R   G++R  +F  
Sbjct: 230 QNFYLIPTAEVPVTNMVRDEIIPLEQLPLKYVAHTPCFRSEAGSAGRDTRGLIRQHQFEK 289

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVL 213
            +     + P+ S  +  ++      I  +LGL    +R  +G IG   +     E  + 
Sbjct: 290 VELVQI-VHPDDSYAALEQLLGHAEAILQKLGLHYRVVRLCTGDIGFSSATTYDIEVWLP 348

Query: 214 ADTGETQVFCSKDFMDF 230
           A     ++    +F  F
Sbjct: 349 AQNTYREISSCSNFEAF 365


>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040357|gb|ACT57153.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 430

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
                 +   + +      G  E+S P L   +    +G+   +  +M    D       
Sbjct: 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD----GRW 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++   I   ++LP  F  +   FR E     R   G++R  +F   +  
Sbjct: 228 LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           S     E S   + +M      I  RL L    +   +G +G   
Sbjct: 288 SI-TREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSA 331


>gi|145635512|ref|ZP_01791212.1| seryl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145267277|gb|EDK07281.1| seryl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 429

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|186476177|ref|YP_001857647.1| histidyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|229558662|sp|B2JIV0|SYH_BURP8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|184192636|gb|ACC70601.1| histidyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 446

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 135/444 (30%), Gaps = 63/444 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +     ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRASIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDTDAEIILMCQ---RLWDDLGLTGIKLE-----INSLGLAEERAK 182

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               E   +  K        ++   + + + +           A  +    + L D    
Sbjct: 183 HRV-ELIAYLEKHMDVLDEDAKRRLYTNPLRVLDTKNPALQAVAQNAPKLIDFLGDESRA 241

Query: 274 NKRVSARGIEVGHIFYF-------GTK-YSLPMSATFKGADGKD---------------- 309
           +     R ++  +I +        G   Y+L +        G                  
Sbjct: 242 HFEGLQRILKANNIPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                    + +G  R++  + E +      + P++    +   + +    +  RD    
Sbjct: 302 GGKPTAACGWAMGIERILELLKEEN------LVPEN----EGCDVYVAHQGEAARDQAFI 351

Query: 368 IYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
           +  RL   G DV      D       SQ   AD  G    VI+G   +++    +K  R 
Sbjct: 352 VAERLRDTGLDVILHCSPDGQASSFKSQMKRADASGAAFAVILGEDEIANGTAGVKALRD 411

Query: 423 T------GIREDMSLEEVINYASH 440
           +        ++ + LE++  Y  +
Sbjct: 412 SSQSNGKSEQQTVPLEDLTEYLIN 435


>gi|297182854|gb|ADI19005.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0070_05I22]
          Length = 417

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 140/418 (33%), Gaps = 39/418 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  +G    LP        V    R    R G  EM+ P L+ ++++        D   K
Sbjct: 5   QPVRGTADLLPDLMAQHRLVIDTARNATARYGFQEMATPILEFSEVFSRPLGNSSDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  + +   P +   +     S     ++LP  ++     FR E RP+ G  R
Sbjct: 65  ENYSFVDRGGEQLTLRPENTAGVVRAMISGGL-TQSLPLKYFYAGPMFRYE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGP--- 201
            R+F              +      +  +  R    LG+    +        AES     
Sbjct: 121 MRQFHQVGIEYLGPNDALADAE---VISAGARFLAELGVLPHCVLHLNSLGDAESRAAYR 177

Query: 202 ---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              +G   +HE  +  D+           +D     +     DI+     ++ +    + 
Sbjct: 178 AALVGFLQTHESALSDDSKRRLAVNPLRILDSKEAGD----RDILQTAPKLQDYLNAASK 233

Query: 259 TSDVHNEKLFDSLPENK---RVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                     D+            RG++      F F T  +L    T       D   +
Sbjct: 234 AHFQTLTTALDAAGVTWVFDPFLVRGLDYYCHTAFEFVTD-ALGTQGTVLAGGRYDGLAE 292

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           M      A    AA IE      G     ++A  ++++++      +   A  ++  +L 
Sbjct: 293 MLGGPAVAGTGWAAGIERLAMLAG---DAAIAAPQVAMLSTDPETDL---AAFQLAEKLR 346

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G D+ +   G  IG +   A      L +I+G   ++ + ++++   TG + ++++
Sbjct: 347 DTGIDIEFPTAGA-IGKKLKKAARSNIRLAIILGGDELAKNTLQLRDLTTGTQAEIAM 403


>gi|126663425|ref|ZP_01734422.1| histidyl-tRNA synthetase [Flavobacteria bacterium BAL38]
 gi|126624373|gb|EAZ95064.1| histidyl-tRNA synthetase [Flavobacteria bacterium BAL38]
          Length = 474

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 122/360 (33%), Gaps = 57/360 (15%)

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             ++    PF  YQIQ  +R + RP+ G  R REF   DA                +   
Sbjct: 131 QHQNEIEFPFKRYQIQPVWRAD-RPQKG--RFREFYQCDADVVGSN--SLWQEVELV-QL 184

Query: 181 YLRIFHRLGLKSIPMRAESGPI---------GGDLSHEFIVLADT----GET-------Q 220
           Y  +F +LGL  + ++  +  I           D   +F V  D     GE        +
Sbjct: 185 YDSVFSQLGLNGVTIKINNRKILSGIAEVIGASDKLIDFTVALDKLDKIGEDGVKKEMLE 244

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD------SLPEN 274
              S+  ++   P  N        +  +             V+  +          L   
Sbjct: 245 KGISETAIEKVQPLFNFTGTINEKIEKLAVLLANSEEGMKGVNELQFICDNVSTLGLQTA 304

Query: 275 KRVSARGIEVGHIFYFGTKYSLPM-----------SATFKGADG----KDHYVQMGSYGI 319
                  +  G  +Y G  + +                +    G    K+      S+G+
Sbjct: 305 FLDLDVTLARGLNYYTGAIFEVAAPKGVAMGSIGGGGRYDDLTGIFGLKNMSGVGISFGL 364

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                +A VIE        ++P++V     +L  +   D+    A + I  +L + G  V
Sbjct: 365 D---RIALVIEELG-----LFPEAVLATSKALF-LNFGDKEALYAMQAI-GKLRQAGIKV 414

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                  +IG QF  AD  G P  V+VG + + +++  IK+  +G ++ +  E ++    
Sbjct: 415 ELYPDNAKIGKQFQHADKRGIPFTVLVGEEEIQNNQYAIKNLASGEQQKVDFETLVALLK 474


>gi|84387626|ref|ZP_00990643.1| histidyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84377471|gb|EAP94337.1| histidyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 422

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 146/439 (33%), Gaps = 52/439 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP        V + ++   +  G  E+ +P ++  +L+  +     D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVESAVKSVVSAYGYNEVRMPIVEETNLFSRAVGEETDVVSK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +    R+     + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAGCVRSCIQNSLINRDE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   I    S E  
Sbjct: 122 YRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGID-KHVRLELNSI---GSQEDR 174

Query: 212 VLADTG-------------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           V   T              E             + ++N D   I+     + ++    + 
Sbjct: 175 VSYRTALVAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESK 234

Query: 259 TSDVHNEKLFDSLPENKR---VSARGIEVG--HIFYFGTKYSLPMSATFKG--------A 305
                  +L D++    +      RG++     +F + T  SL    T  G         
Sbjct: 235 QHFAGLCELLDAVGIEYQVNERLVRGLDYYNRTVFEWITD-SLGAQGTVCGGGRYDGLVE 293

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                      + +G  R+V  ++  + +   +          + +  + A  +    A 
Sbjct: 294 QLGGKATNAVGFAMGLERLV--LMMETLELTEVR-------RSVDVYVVAAG-EGTMIAG 343

Query: 366 EKIYARLSK--VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            ++  +L     G  V     G     QF  AD +G  + +++G   V+D+ V +K  + 
Sbjct: 344 MQLANQLRDTVEGVRVMNHFGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVG 403

Query: 424 GIREDMSLEEVINYASHRF 442
           G +E +S  EV    +   
Sbjct: 404 GEQETVSQTEVAEKVAALI 422


>gi|315633929|ref|ZP_07889218.1| serine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315477179|gb|EFU67922.1| serine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 438

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            K    +   + +    + G  E  VP L + D    +G+   + +++         D N
Sbjct: 171 AKLHRALAQFMLDLHTEQHGYTEAYVPYLVNHDTLYGTGQLPKFSEDLFHTKPLEGQDPN 230

Query: 101 D--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +  +     PT E  +T++ R  I    NLP         FR E     R   G++R  +
Sbjct: 231 EVQRTYALIPTAEVPVTNLVRGDILEAENLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEF 210
           F   +     + PE S  +  ++     ++   LGL    +   +G +G         E 
Sbjct: 291 FDKVELVQI-VEPERSMEALEELTGHAEKVLQLLGLPYRKVLLCTGDMGFGSCKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            V A     ++    +  DF
Sbjct: 350 WVPAQNTYREISSCSNMWDF 369


>gi|260773384|ref|ZP_05882300.1| histidyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612523|gb|EEX37726.1| histidyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 412

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 147/429 (34%), Gaps = 50/429 (11%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP        V   ++   +  G  E+ +P ++   L+  + G   D   KEM   ADRN
Sbjct: 5   LPTQSPLWQKVENAVKNVVSAYGYSEVRMPIVEMTPLFSRAIGEVTDVVEKEMYTFADRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   Y       + I   FR E RP+ G  R R+F     
Sbjct: 65  GDSLSLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--RYRQFHQCGV 120

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--------EFIV 212
             F +           M     R++  LG+    +R E   IG   +         E++ 
Sbjct: 121 EVFGIDGPDVDAELIMM---TARLWRELGIAE-HVRLELNSIGSLAARADYRSALIEYLE 176

Query: 213 LADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                  +    + + +    + S+N D   I+     +  +    +        +L D+
Sbjct: 177 QHQDVLDEDCKRRMYTNPLRVLDSKNPDVQSILGDAPELADYLDAESKQHFSGLCELLDA 236

Query: 271 LPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA----------DGKDHYVQMG 315
                   +   RG++     +F + T+ SL    T  G            GK       
Sbjct: 237 AGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQLGGKATPAV-- 293

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            + +G  R+V  ++E+  +              + +  + A +     A  K+  +L + 
Sbjct: 294 GFAMGLERLVL-MMETLGNTDVRR--------SVDVYIVTAGEGTTM-AGMKLAEQLREQ 343

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V     G     QF  AD +G  + +++G   +++  V +K  L G +  +S  +
Sbjct: 344 VPGLRVMNHCGGGNFKKQFKRADKVGAAVALVLGENEIAEKTVVLKDLLGGQQTTLSQTD 403

Query: 434 VINYASHRF 442
           + +  +H  
Sbjct: 404 IASQLAHLV 412


>gi|205355961|ref|ZP_03222729.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346085|gb|EDZ32720.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 263

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 18  GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 74

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 75  LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 134

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 135 SI-TKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 193

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 194 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 226


>gi|30021425|ref|NP_833056.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|39932342|sp|Q81B71|SYH1_BACCR RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|29896979|gb|AAP10257.1| Histidyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 426

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 143/444 (32%), Gaps = 67/444 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LQDQGKRELALRYDLTIPFAKVVAMNPNLR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ES  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMAMAF-ELFRTLNLEITIQYNNRKLLNGILESINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPL 238

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 239 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 299 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADVFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              Q     C +I  +L       V  +  G ++      A+    P  +I+G   +S +
Sbjct: 348 TELQ-----CLQIAQQLRSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTN 402

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
            V +++   G    + +  +  Y 
Sbjct: 403 TVVLRNMKEGSEVKVPISSLSRYL 426


>gi|86130922|ref|ZP_01049521.1| Seryl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85818333|gb|EAQ39493.1| Seryl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 423

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 101/317 (31%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    + A   ++    G  E  VP L +      +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALIAYFLDKNTAAGYTEYQVPHLVNEASGFGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +    +  +   PT E  +T++FR  ++S+  LP T       FR E         G+ R
Sbjct: 223 VT---EDDLYLIPTAEVPVTNMFRGDLRSHSELPITCTGYTPCFRREAGSYGAHVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    +  P+ S  + + M      I   L L    +R   G +G        
Sbjct: 280 LHQFDKVEIVRIEH-PDNSAAALDGMVDHVKTILQELELPYRILRLCGGDLG-------- 330

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S   D                                 
Sbjct: 331 ----------FTSHLTYDFELFSTAQDRW------------------------------- 349

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                     +E+  +  F T  +  +   FK  DG++     +    +   RV+A ++E
Sbjct: 350 ----------LEISSVSNFLTFQANRLKLRFKDQDGQNKLAHTLNGSALALPRVLAGILE 399

Query: 331 SSHDGKGIIWPDSVAPF 347
           +    +GI  P ++ P+
Sbjct: 400 NCQTPEGIKIPKALVPY 416


>gi|325962743|ref|YP_004240649.1| glycyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468830|gb|ADX72515.1| glycyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 461

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 68/461 (14%), Positives = 145/461 (31%), Gaps = 64/461 (13%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS---VPTLQSADLWV 81
            + + G I+  S+  + + PLG +  +N+     +     G  ++       +    +W 
Sbjct: 19  FVFQAGEIYGGSRSAWDYGPLGAELKENIKRQWWQSM-VRGREDVVGLDSSVILPRQVWE 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  + +      L +       Y   H E   +  +                  + + 
Sbjct: 78  ASGHVEVFSD---PLVECLSCHKRYRADHLEEEYEEKKGRPAENGLKDIACANCGTRGQW 134

Query: 142 -ELRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIPMR 196
            E +   G++++             + EG       +   +FV++  +            
Sbjct: 135 TEPQEFSGLLKT-------YLGPVASEEGLHYLRPETAQGIFVNFNNVLTT---SRKKPP 184

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
              G IG    +E         T+ F   +   F  P  + ++        +        
Sbjct: 185 FGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHKYWMNERMAWYTGLGI 244

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFK 303
              +    E   + L    + +    ++ + F F              T + L   A   
Sbjct: 245 REENLRFFEHPQEKLSHYSKGTT---DIEYRFGFQGSEWGELEGIANRTDFDLSTHAKAS 301

Query: 304 GAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPD 342
           G D         + +   +     G  R   A +  ++                 +    
Sbjct: 302 GTDLSYFNQATNERYIPYVIEPAAGLTRSFMAFLVDAYTEDEAPNAKGGVDVRTVLKLDP 361

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFP 401
            +AP K +++ + + ++      + + A+L K    D  +DD G  IG ++   D +G P
Sbjct: 362 RLAPVKAAVLPL-SRNEDLSPKAKDLGAQLRKNWNID--FDDAGA-IGRRYRRQDEIGTP 417

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + V    + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 418 FCITVDFDTLEDQAVTIRERDTMSQERVSLDKVEGYLAARL 458


>gi|293392027|ref|ZP_06636361.1| seryl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952561|gb|EFE02680.1| seryl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 438

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 24/237 (10%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ  K    +   + +    + G  E
Sbjct: 134 DFEVKDHVTLGENLQGLDFAAAVKLTGSRFVVMKGQIAKLHRAIAQFMLDLHTEQHGYTE 193

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRND--KAMIYGPTHEEVMTDIFRSH 121
             VP L + D    +G+   + +++         D N+  +     PT E  +T++ R  
Sbjct: 194 AYVPYLVNHDTLYGTGQLPKFSEDLFHTKPLEGQDPNEVQRTYGLIPTAEVPVTNLVRGE 253

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    NLP         FR E     R   G++R  +F   +     + PE S  +  ++
Sbjct: 254 ILDAENLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VEPEKSMEALEEL 312

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
                ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 313 TGHAEKVLQLLGLPYRKVLLCTGDMGFGSCKTYDLEVWVSAQNTYREISSCSNMWDF 369


>gi|194366308|ref|YP_002028918.1| seryl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|238693459|sp|B4SP40|SYS_STRM5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194349112|gb|ACF52235.1| seryl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 426

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    + +   +  ++ + A   D    
Sbjct: 171 ARLHRALAQFMVDLHTGEHGYEETNVPLLVNADSLRGTSQLPKFEDDLFKTAV-GDSTRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIVDAERLPLRMTAHSMCFRAEAGSGGRDVRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 SIS-RPEDSDAEHQRMTRCAEVVLEKLGLPYRKVLLCTGDMGFSAVKTYDLEVWLPSQET 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|90415908|ref|ZP_01223841.1| seryl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90332282|gb|EAS47479.1| seryl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 425

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 14/213 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
                 +   +        G  E+ VP + + +    +G+   + +++ +L D  ++   
Sbjct: 174 ASLHRALTQFMLNTHIGEHGYEEVYVPYIVNRESLFGTGQLPKFEEDLFKLND--EREFY 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R+ I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPITNLYRNEIVDR--LPIKYVSHTPCFRSEAGSYGRDTRGMIRQHQFEKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F + P+ S  +   +      I  +L L    +    G +G   +     E  + +   
Sbjct: 290 QF-VHPDESWDALESLVGHAEAILQKLELPYRSVILCGGDLGFSAAKTIDLEVWLPSQEK 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +F DF        F +      ++ 
Sbjct: 349 YREISSCSNFADFQARRMKARFRNAEGKPELLH 381


>gi|292487821|ref|YP_003530696.1| seryl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292899049|ref|YP_003538418.1| seryl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291198897|emb|CBJ46007.1| seryl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291553243|emb|CBA20288.1| Seryl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 430

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 20  IASH-KLMLRT-GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H +L  R  G+    +    G    +  GQ AL    ++  + +    + G  E  V
Sbjct: 136 VRDHVELGERAAGLDFAAAVKLTGSRFIVMKGQIALMHRALSQFMLDLHTEQHGYQETYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRN 127
           P L +      +G+   +G+++      +++A        PT E  +T++ R  I    +
Sbjct: 196 PYLVNHASLYGTGQLPKFGEDLFHTRPLDEEASSSNYALIPTSEVPLTNLVRDEILEEES 255

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +       PE S  +  ++     +
Sbjct: 256 LPLKMTAHTPCFRSEAGAYGRDTRGLIRMHQFDKVEMVHI-TRPEDSMDALEELVGHAEK 314

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +   L L    +   +G +G         E  + A     ++    +  DF
Sbjct: 315 VLQLLNLPYRKVLLCTGDMGFGAQKTYDLEVWLPAQDTYREISSCSNMGDF 365


>gi|288931794|ref|YP_003435854.1| glycyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894042|gb|ADC65579.1| glycyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 565

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRD 363
             +     G  R+   ++E + D           +     +AP  ++++ + + ++  + 
Sbjct: 414 PHVVEPSFGLDRITYVLLEHAFDKDVVDGEERRVLRLKRWMAPIDVAVLPLLSREEFQK- 472

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L + G    +DD G  IG ++   D +G P  V V  +   D  V I+ R T
Sbjct: 473 KALEIVEMLRENGIYTEYDDSG-SIGRRYRRFDEVGVPFCVTVDHQTFEDDTVTIRDRDT 531

Query: 424 GIREDMSLEEVINYASHRFSNNRPV 448
             +  + +EE++       ++ + +
Sbjct: 532 TKQVRVKVEELVGVLKELLNSEKSI 556



 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 67/237 (28%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQS 76
           ++++R G + Q         G   + PLG      +  + R+       ++E+  PT+  
Sbjct: 6   EMLVRRGFLWQSFEIYGGMAGFIDYGPLGNAVRRKLENLWRKYFVINERSVEIDTPTIGV 65

Query: 77  ADLWVESGRY-------------------DSYGKE------------------------- 92
            ++++ SG                     D Y KE                         
Sbjct: 66  EEVFIASGHAEGFTDVAIECESCGRVFRADHYIKEKLNIEVDPTIERVWDVIVEFNLKCE 125

Query: 93  -------------MLRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQ 136
                        M        K       P   + +   F+     +R+ LPF   QI 
Sbjct: 126 CGGNFKKPFHFNLMFETKIGPGKGKKGYLRPETAQGIFIAFKRLSNYFRDKLPFGVAQIG 185

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             +R+E+ PR GV+R REF   +   F    E     + K     + +  +   +  
Sbjct: 186 RAYRNEISPRQGVIRLREFNQAELEFFCHPGEKKHPEFYKYANDVVTLVDKFDKEHR 242


>gi|152993537|ref|YP_001359258.1| seryl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166223301|sp|A6QBP2|SYS_SULNB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|151425398|dbj|BAF72901.1| seryl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 414

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 12/199 (6%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +     +     G  E  VP + +A +   +G+   +  ++ ++ D +   +   PT 
Sbjct: 175 RALINFFLDTNRERGFEEFCVPFMNNAAMLQGTGQLPKFEDDLFKIEDED---LYLIPTA 231

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T+++   I +  +LP         FR E     R   G++R  +F   +  +    
Sbjct: 232 EVPLTNMYHDEILAEIDLPVLMTGYTPCFRKEAGSAGRDTRGMIRQHQFDKVEMVAI-AH 290

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVF 222
           P+ S   ++ M  +   I   LGL    +    G +G   +     E  +       ++ 
Sbjct: 291 PDNSDEVFDMMVQNASDILTALGLPHRVVELCGGDLGFSAAKTIDLEVWLPGQNKYREIS 350

Query: 223 CSKDFMDFPIPSENTDFDD 241
              +  DF        F D
Sbjct: 351 SISNTRDFQARRAKIRFKD 369


>gi|76788408|ref|YP_330637.1| histidyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|77405121|ref|ZP_00782220.1| histidyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77410833|ref|ZP_00787190.1| histidyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|123601069|sp|Q3JYL6|SYH_STRA1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|76563465|gb|ABA46049.1| histidyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|77163051|gb|EAO74005.1| histidyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77176264|gb|EAO79034.1| histidyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 426

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 128/426 (30%), Gaps = 41/426 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  +IR    +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGESAKWQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF       F      +      M      +F  LG+K++ +   S  +G   
Sbjct: 120 AG--RLREFHQVGVECFGSNNPATDVETIAMG---HHLFEDLGIKNVKLHLNS--LGSPE 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +    A          +   D            + S     +       +  D  +E 
Sbjct: 173 SRQAYRQALIDYLTPIREQLSKDSQRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDES 232

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
               FD++            +      G  Y       F     D +      G Y    
Sbjct: 233 SQAHFDAVCHMLDALNIPYIIDTNMVRGLDYYNHTIFEFITEIEDNELTICAGGRYDGLV 292

Query: 322 MRVVAA-------------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                               +      +GI  P       + +  + +       A   +
Sbjct: 293 S-YFGGPETPAFGFGLGLERLLLILGKQGIPLPIENT-IDLYIAVLGS---EANLAALDL 347

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              +   G  V  D +G +I +QF  AD     + + +GS  V   +V +K+  T     
Sbjct: 348 AQSIRHQGFKVERDYLGRKIKAQFKSADTFNAKVIMTLGSSEVDSREVSLKNNQTRQEVK 407

Query: 429 MSLEEV 434
           +S E +
Sbjct: 408 VSFENI 413


>gi|312171939|emb|CBX80196.1| Seryl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 430

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 20  IASH-KLMLRT-GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H +L  R  G+    +    G    +  GQ AL    ++  + +    + G  E  V
Sbjct: 136 VRDHVELGERAAGLDFAAAVKLTGSRFIVMKGQIALMHRALSQFMLDLHTEQHGYQETYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRN 127
           P L +      +G+   +G+++      +++A        PT E  +T++ R  I    +
Sbjct: 196 PYLVNHASLYGTGQLPKFGEDLFHTRPLDEEASSSNYALIPTSEVPLTNLVRDEILEEES 255

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +       PE S  +  ++     +
Sbjct: 256 LPLKMTAHTPCFRSEAGAYGRDTRGLIRMHQFDKVEMVHI-TRPEDSMDALEELVGHAEK 314

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +   L L    +   +G +G         E  + A     ++    +  DF
Sbjct: 315 VLQLLNLPYRKVLLCTGDMGFGAQKTYDLEVWLPAQDTYREISSCSNMGDF 365


>gi|294668779|ref|ZP_06733872.1| serine--tRNA ligase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309296|gb|EFE50539.1| serine--tRNA ligase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 384

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D +I  H  L    G+  +      G    +  GQ A     +   + +    +    E 
Sbjct: 89  DFDIKDHVDLGAPLGLDFEGGAALSGSRFTVMKGQIARLHRALAQFMLDTHTQQHDYTEH 148

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + +      +G+   +G+++  +    D +       PT E  +T+  R  I    
Sbjct: 149 YTPYIVNDSTLYGTGQLPKFGEDLFHVTRGGDESKTTQYLIPTAEVTLTNTVRDSIVPSE 208

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 209 KLPLKLTAHSPCFRSEAGSHGKDVRGLIRQHQFDKVEMVQI-VRPETSYDALEEMVGHAE 267

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 268 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 327

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 328 FKDENGKNRLVH 339


>gi|307266972|ref|ZP_07548489.1| glycyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918021|gb|EFN48278.1| glycyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 462

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 149/449 (33%), Gaps = 66/449 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   Q     + +    L + ++WV SG   S+      L 
Sbjct: 34  WDYGPLGVELKNNIKRMWWKRFIQQSPYNVGIDTAILMNPEVWVASGHVSSFSD---PLM 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ----LKFRDELR------PRF 147
           D  +    +          +   +IK  + L  +         ++F  E +        +
Sbjct: 91  DCKECKSRFRAD------QLIEDYIK-EKELNISIEGWTNEQLMEFIKEHKVPCPKCGAY 143

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGP 201
                R+F +       +T +     Y +      +FV++  +          +    G 
Sbjct: 144 NFTDIRKFNLMFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRT---TRKKIPFGIGQ 200

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IG    +E         T+ F   +   F  P E+ ++        +           + 
Sbjct: 201 IGKSFRNEITPGNFIFRTREFEQMELEFFCKPGEDMEWFSYWRKYCMDWLLEFGLKEENL 260

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD----- 306
              +   + L      +    ++ + F FG          T + L       G D     
Sbjct: 261 RFRDHKKEELSHYSTATT---DIEYNFPFGWGELWGIANRTDFDLRQHMEHSGVDLSYMD 317

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINI 354
              G+ +        +G  R++ A +  +++ +          +    ++AP K +++ +
Sbjct: 318 PVTGEKYIPYCIEPSVGVDRLMLAFLIDAYEEEELEDGETRVVLRLHPALAPIKAAVLPL 377

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D 
Sbjct: 378 SKK---LSENAYKLYDQLRNKFV-VDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDH 432

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V I+ R T  +  + +EEV  Y   R +
Sbjct: 433 CVTIRDRDTMEQVRIKIEEVEKYLEERLN 461


>gi|262305715|gb|ACY45450.1| glu- + pro-tRNA synthetase [Carcinoscorpius rotundicauda]
          Length = 134

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++     + G  +S      F+  D  + ++V   S+GI + R + A++    D  
Sbjct: 15  SGRGLQGATSHHLGQNFSKMFEILFEDPDTSEKNFVYQNSWGI-STRTLGALVMVHSDNT 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVCR-----DACEKIYARLSKVGCDVFWDDM-GEQI 388
           GI+ P  VA F++ ++   +             D C+     +++ G  V+ D       
Sbjct: 74  GIVLPPKVACFQVVIVPCGMTVKLSEADRIDLIDKCKVFENLMTENGIRVYGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|21672579|ref|NP_660646.1| seryl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|22654286|sp|P81434|SYS_BUCAP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21623207|gb|AAM67857.1| seryl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 427

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  G  AL    ++  + +    + G  E  VP L + D    +G+   +  ++
Sbjct: 158 SGARFIVMKGNIALLHRALSQFMLDLHTIKHGYTETYVPYLVNHDSLYGTGQLPKFTDDL 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
             +   + K  +  PT E  +T++F + I +   LP         FR E     R   G+
Sbjct: 218 FHINSIDKKKYVLIPTAEVPLTNLFSNQILNETELPIMLTAHTPCFRSEASSYGRDSKGL 277

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +     + PE S ++   +     ++   L L    +    G +G   +  
Sbjct: 278 IRLHQFDKVELVQI-IQPELSMNALELLTHHAEKVLQLLELPYRKVLLCGGEMGFSATKT 336

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E    +     ++    +  DF      T +
Sbjct: 337 YDLEVWFPSQKKYREISSCSNMSDFQARRMKTRY 370


>gi|269127431|ref|YP_003300801.1| glycyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268312389|gb|ACY98763.1| glycyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 462

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 147/442 (33%), Gaps = 56/442 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     +   ++    + +    + + ++W  SG   ++   +    
Sbjct: 35  WDYGPLGVELKNNVKRQWWKSMVQSREDVVGLDSCVILAREVWEASGHVQAFVDPLTECT 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL- 156
             + +        E       R       ++       +  F  E R   G++++  FL 
Sbjct: 95  SCHKRFRA-DHLEEAYQAKHGRPPAGGLADVNCPNCGTKGAF-TEPRMFNGLLKT--FLG 150

Query: 157 --MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                +    L PE ++     +F++++ +          +    G IG    +E     
Sbjct: 151 PVEDASGLAYLRPETAQ----GIFINFMNVQQS---SRRKIPFGIGQIGKSFRNEITPGN 203

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T+ F   +   F  P  + ++        +           +    E       + 
Sbjct: 204 FIFRTREFEQMEMEFFVEPGTDEEWHQYWIDQRLQWYVDLGIRKENLRLYEH---PAEKL 260

Query: 275 KRVSARGIEVGHIFYF-------------GTKYSLPMSATFKGAD--------GKDHYVQ 313
              S R +++ + F F              T + L   A   G D        G+ +   
Sbjct: 261 SHYSKRTVDIEYRFDFVGAEWGELEGIANRTDFDLSTHAKASGQDLSYFDQEKGERYIPY 320

Query: 314 MGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQV 360
           +     G  R V   +  ++                 +     +AP K +++ + + +  
Sbjct: 321 VIEPAAGVDRCVLTFLLDAYAEDEAPNAKGKLEKRTVLRLDPRLAPVKAAVLPL-SRNAD 379

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                  + ARL K   +V +DD G  IG ++   D +G P  + V    + D  V ++ 
Sbjct: 380 LSPKARDLAARLRKHW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDDAVTVRE 437

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +  +E +++ +V ++ + + 
Sbjct: 438 RDSMKQERIAISQVESFLAAQL 459


>gi|304437508|ref|ZP_07397466.1| serine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369558|gb|EFM23225.1| serine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 423

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    + +G+   + ++M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNEASMIGTGQLPKFAEDMFKL--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 221 EGLDYYLVPTAEVPTTNYHRDEILDAEQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F +TPE S      M  +   +   L L    ++  +G +    +     E  
Sbjct: 281 NKVELIKF-VTPETSWDELESMVTAAEDVLKILELPYRVIQLCTGDMSFTSAKTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           + A     ++    +  D+     N  +            
Sbjct: 340 MPAQDKYREISSCSNCTDYQARRANIKYRPARGAKPTFLH 379


>gi|238926285|ref|ZP_04658045.1| histidine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885965|gb|EEQ49603.1| histidine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 421

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 129/430 (30%), Gaps = 27/430 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+    +G    LP    A  +V  +IR+   R G  E+  P  +  +L+        D 
Sbjct: 1   MLTNAPRGTKDILPDAVGAWTHVEHVIRDLCARYGYGEIRTPMFEHTELFQRGIGDGTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRF 147
             KEM   +DR D+++   P +       +    K Y +      + I   FR + RP+ 
Sbjct: 61  VDKEMYTFSDRGDRSLTLRPENTASAVRAY-LQNKLYADGGLQKLFYIGSMFRYD-RPQA 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI---------FHRLGLKS-IPMRA 197
           G  R REF      +              +   +L +          + +G  +  P+  
Sbjct: 119 G--RMREFHQFGVEALGEESPALDAEVILLAYDFLTVLGLTGLTLKLNSVGCPACRPVYR 176

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           E              L D  + +   S   +          F       +          
Sbjct: 177 ERLQAYFKEY--LPTLCDDCKDRYTRSPLRILDCKRDAEQPFMAGAPAITDCLCPACTEH 234

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                 +        E      RG++      F   Y  P+ A    A G  +   +   
Sbjct: 235 FEQVQQHLTAAGVSYELDPRLVRGLDYYTRTAFEIAY-PPLGAQSAVAGGGRYDGLVEEL 293

Query: 318 GIGAMRV--VAAVIES--SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           G         AA +E       +  + P  V P    +  I   D   + A   +   L 
Sbjct: 294 GGNPTPAVGFAAGLERVLLALEQQNLLP--VQPPAADVFLIALGDAAAK-AAFPLLHELR 350

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D  G  + +Q   A+  G    VI+G   ++     ++      +E  +L++
Sbjct: 351 HGGVRALMDYAGRSMKAQMKQANRSGARYAVILGEDELAAHTALVRDMAESAQETCALDD 410

Query: 434 VINYASHRFS 443
           ++        
Sbjct: 411 LVEKMISEVK 420


>gi|119945378|ref|YP_943058.1| seryl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|166223274|sp|A1SVE4|SYS_PSYIN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|119863982|gb|ABM03459.1| seryl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 428

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 19/241 (7%)

Query: 8   LPILQENPRDAEIASHKLMLRT--GMIHQHS---KGIYSWLPLG--QKALDNVNAIIREE 60
           L   +    D E+  H  +     G+  + +    G    +  G   K    +   + + 
Sbjct: 124 LKWGEPKKFDFEVKDHVDLGEALDGLDFKSAVKISGSRFIVMRGKIAKLHRALAQYMLDL 183

Query: 61  Q-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDI 117
             +  G  EM VP L +AD    +G+   +G ++   + A      M   PT E  +T++
Sbjct: 184 HTDHHGYTEMYVPYLVNADSLYGTGQLPKFGDDLFNTKPATEEGIGMSLIPTAEVPLTNM 243

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
            R  I    +LP         FR E     R   G++R  +F   +   F + PE S  +
Sbjct: 244 SRDMIYDESDLPLKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQF-VHPEKSFEA 302

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMD 229
             ++     ++   L L    +   +G +G   +     E  + A     ++    +  D
Sbjct: 303 LEELTGHAEQVLKNLQLPYRKVVLCTGDMGFGATKTYDLEVWLPAQDQYREISSCSNIGD 362

Query: 230 F 230
           F
Sbjct: 363 F 363


>gi|68171802|ref|ZP_00545142.1| Histidyl-tRNA synthetase, class IIa [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658069|ref|YP_507112.1| histidyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123736410|sp|Q2GHH1|SYH_EHRCR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|67998775|gb|EAM85487.1| Histidyl-tRNA synthetase, class IIa [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599526|gb|ABD44995.1| histidyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 413

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 134/429 (31%), Gaps = 74/429 (17%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEMLRLADRNDKAMIYG 107
              ++ + +   +R G I +  P ++  +++ ++   DS    KEM    D++ + +   
Sbjct: 23  FQYIHRLSQSIAHRYGFIAVDTPIIEFTEVFTKTLGDDSDIVMKEMYNFQDKSGENITLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P   E  + I R  I     +P   +     FR E RP+    R R+F   +   F    
Sbjct: 83  P---EFTSAIVRVLINKNLIIPVKLFSSGPVFRYE-RPQK--CRQRQFHQVNFEFFGSDL 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKS-----IPMRAESGPIGG--------------DLSH 208
             +      M      I   L L       I    +   +                DLS 
Sbjct: 137 PLADIE---MIALGYHILDELKLLDDITLEINFLGDKETMNSYKLSLIEYLNKYKKDLSE 193

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +      T   ++  SK   D  I     +     S +S        Y            
Sbjct: 194 DSQRRLITNPLRILDSKAPEDREILLNVPNISYFYSKSSNDFFAEVLYGL-------DEL 246

Query: 269 DSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIGA--- 321
               +      RG++     +F F T      +A   G   DG       G+        
Sbjct: 247 CIPYKVNHSIVRGLDYYCNTVFEFTTSKLGAQNAVVAGGRYDG-LVKSMGGNDTPAVGFA 305

Query: 322 --MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
             +  V+A+I+  H            P  + LI I            K+   L   G  V
Sbjct: 306 MGVERVSALIDYKHQE----------PRSVVLIPIGKD---AVSYALKLAYELRCNGISV 352

Query: 380 FWDDMGEQIGSQ---FAVADLLGF---PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            W         +      A L       + +I G + + ++ +++K   TG ++++   +
Sbjct: 353 NW-------NYKNANLRNA-LRKVGDDNIVLIFGDEELKNNTIQVKDMKTGEQQEIVRCD 404

Query: 434 VINYASHRF 442
           +++   ++ 
Sbjct: 405 LLDTLCNKI 413


>gi|309808556|ref|ZP_07702453.1| serine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308168206|gb|EFO70327.1| serine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 384

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E  + G  E+  P L + D    +G++  + +++  + D
Sbjct: 111 FVYYKGAGALLERAVFNFFLDENVKAGYTEVIPPYLVNYDSMQGTGQFPKFTEDVYTIVD 170

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I   + LP     +   FR E     R   G++
Sbjct: 171 NDDPDKPRELTLIPTAEVPLVNYFRDKILDIKQLPINVTAMSPAFRSEAGSAGRDTRGLI 230

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        + S    +K+  +   +  +L L    +   +G      +   
Sbjct: 231 RMHEFRKVEMVKI-CDEDSSWQELDKLTKNAEHLLQKLELPYHVVALSTGDASFTSAKTY 289

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             E  + A     ++    +  DF        + D
Sbjct: 290 DLEVWMPAQNQYREISSCSNCTDFQARRSLIRYRD 324


>gi|190574986|ref|YP_001972831.1| seryl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|229559993|sp|B2FKE4|SYS_STRMK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|190012908|emb|CAQ46540.1| putative seryl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
          Length = 426

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    + +   +  ++ + A   D    
Sbjct: 171 ARLHRALAQFMVDLHTGEHGYEETNVPLLVNADSLRGTSQLPKFEDDLFKTAV-GDSTRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIVDAERLPLRMTAHSMCFRAEAGSGGRDVRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 SIS-RPEDSDAEHQRMTRCAEVVLEKLGLPYRKVLLCTGDMGFSAVKTYDLEVWLPSQET 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|330889681|gb|EGH22342.1| seryl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020]
          Length = 426

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     N  G  E   P L  A     +G+   + +++ ++    +  + 
Sbjct: 170 ARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKITREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +   +  +  R+   L      +   +G +G         E  + +   
Sbjct: 290 QIVA-PEDSMAALESLTGNAERVLQLLEPPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|330685310|gb|EGG96971.1| serine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 428

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S  +  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EKPEDSWDALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|284166745|ref|YP_003405024.1| histidyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284016400|gb|ADB62351.1| histidyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 434

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 133/440 (30%), Gaps = 56/440 (12%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYG 90
           ++ H KG   + P    A   V   +     R G  E+  P L+   ++V +SG  +   
Sbjct: 1   MYDHLKGFRDFYPAEMGARREVIDTLEATARRYGFREVGTPALERTQMYVDKSG--EEIV 58

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +E+    D+  + +   P     +  +   +    S    P  +   +  +R E   +  
Sbjct: 59  EELYAFEDKGGREVALTPELTPTVARMVVAKQQELS---KPIKWVSTRPFWRYEQVQQ-- 113

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDL 206
             R REF   +   F  +   +           L     LGL  +    R     I G L
Sbjct: 114 -GRFREFYQTNVDIFGSSEPEADAEILAFAADAL---TDLGLTGEEFEFRVSHRDILGGL 169

Query: 207 SHEFIVLADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
              F    DT         ++     ++ D  + +  +        + +           
Sbjct: 170 FESFDADVDTAAAIRAVDKSEKISHNEYHDLLVDAGLSYDQAAEFDDLLAVGEDDLDELV 229

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYF--------GTKYSLPMSATFKGADGKDHY 311
                +++  ++   + V     + G   Y         G  Y   +      + G+   
Sbjct: 230 EFAGTDRVEAAVTNLQNVLEAAADFGAREYCTLSLETARGLDYYTGVVFECFDSTGEVSR 289

Query: 312 VQMG---------SYGIGAMRVVAA--------VIESSHDGKGIIWPDSVAPFKISLINI 354
              G         S+G      V          ++    D    +WPD        ++ I
Sbjct: 290 SVFGGGRYDDLIESFGGQPTPAVGVAPGLAPLSLLLQRAD----VWPDEAFTTDYYVLQI 345

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                       +I   L + G  V  D      GSQ   AD +     V+ G + + + 
Sbjct: 346 GDTRSE----AARIVRDLRERGHVVETDVADRSFGSQLNYADSINAETVVVAGEQDLEND 401

Query: 415 KVEIKHRLTGIREDMSLEEV 434
           +V IK   +G +    ++E 
Sbjct: 402 EVTIKDMESGDQTQAPIDEF 421


>gi|182679617|ref|YP_001833763.1| seryl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|238691238|sp|B2IJG1|SYS_BEII9 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|182635500|gb|ACB96274.1| seryl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 436

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML------RLADRNDKA 103
             +   + +      G  E++ P L   D    + +     ++M          +     
Sbjct: 176 RALGQFMLDLHTGEHGYTEVNPPILARDDALFGTAQLPKLEEDMFAAHAGRVPQEAAGDL 235

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E V+T++ R  I   + LP  F      FR E     R   G++R  +F   +
Sbjct: 236 YWLIPTSEVVLTNLVRETILDEKQLPLRFTACTPCFRAEAGSAGRDTRGMIRQHQFTKTE 295

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             S   TPE +   + +M      +  RLGL    +   +G +G
Sbjct: 296 LVSI-TTPEEALVEHERMLTCAEEVLKRLGLAYRVVTLCTGDMG 338


>gi|146311074|ref|YP_001176148.1| seryl-tRNA synthetase [Enterobacter sp. 638]
 gi|166987313|sp|A4W8R7|SYS_ENT38 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|145317950|gb|ABP60097.1| seryl-tRNA synthetase [Enterobacter sp. 638]
          Length = 430

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQ--KALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ       +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHAGLDFAAAVKLTGARFVVMKGQIAHLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++      +++A        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEAESSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEVSMDALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    M   +G +G   +     E  V A     ++    +  DF
Sbjct: 312 AEKVLELLGLPYRRMALCTGDMGFGATKTFDLEVWVPAQNTYREISSCSNVGDF 365


>gi|50365183|ref|YP_053608.1| histidyl-tRNA synthetase [Mesoplasma florum L1]
 gi|81695673|sp|Q6F199|SYH_MESFL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|50363739|gb|AAT75724.1| histidyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 457

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 139/419 (33%), Gaps = 50/419 (11%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + V    R+  N     E+  P  +S +L+V       D   KEM    DR  +  +  
Sbjct: 61  WNAVEEKFRKVLNLFNYGEIITPMFESKELFVRGVGDSSDIVSKEMYEFTDRKGREYVLR 120

Query: 108 PTHE-EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P      +  +  + +    NLP+  + I   FR E RP+ G  R R+F      +F + 
Sbjct: 121 PEGTAPTVRALIENKLYIQENLPYKTFYIGPIFRYE-RPQAG--RYRQFNQLGVETFGID 177

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                     +  S+L+    L +    +   +  I G+   E+ +     E + + +  
Sbjct: 178 SISHDVELISLGQSFLK---ELKINKDVIVEMNYLISGNERKEYEL-----ELKKYLNLF 229

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH--NEKLFDSLPENKRVSARGIEV 284
                      + + +  L+  ++      A    +    E          ++   GIE 
Sbjct: 230 DDLCSDCEIRINKNVLRVLDCKIDGNKFAEAPKMTLFASQENKERLNKTFDQLKQLGIEA 289

Query: 285 GHIFYF--GTKYSLPMSATFKGADGKDHYVQMGSY-----------------GIGAMRVV 325
              F    G  Y   +   FK        +  GSY                  IG  R++
Sbjct: 290 KINFNLVRGLDYYTGLVFEFKNIKTDQAIIAGGSYNNLVEELGGPNLPASGFAIGIERIM 349

Query: 326 AAVIESS---HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             + +      D   +          + +I +    Q   +    + AR + +  D  W+
Sbjct: 350 MILSDQEIKVADEDEL---------DLFIIPLSDDAQFLTNKLL-LEARTANLKVDTNWN 399

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               + G +   A+ L     VI+G   ++     IK + +G  +++  ++++ Y    
Sbjct: 400 IKNLKAGFK--SAERLKSKNIVIIGENSINSDIYAIKDQKSGETKELKFKDIVKYLKGE 456


>gi|190571128|ref|YP_001975486.1| histidyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018532|ref|ZP_03334340.1| histidyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|229470704|sp|B3CLR6|SYH_WOLPP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|190357400|emb|CAQ54834.1| histidyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995483|gb|EEB56123.1| histidyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 407

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 148/443 (33%), Gaps = 71/443 (16%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  +G    L        ++        +  G + +  P  +  +++ ++     D 
Sbjct: 1   MTNQTVRGTKDLLFDEWYKFKHIEQTASRISSLYGFLPVQTPIFEYTEVFTKTLGDSSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  K++   P   E    I R  I+     P   + I   FR E RP+ G
Sbjct: 61  ITKEMYTFIDKGGKSITLRP---EFTAAIVRLLIEKKLQAPIKLFSIGPAFRYE-RPQKG 116

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG---- 204
             R R+F   +   F +    +      +      +    G+ +  ++ E   +G     
Sbjct: 117 --RQRQFHQINFEVFGIEDPKADIE---LISLAQHLLTEFGI-NKNVKLEINSLGDSETI 170

Query: 205 ----------------DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                           DLS +          ++  SKD  D  I S+     D  +  S 
Sbjct: 171 TQYREALISYLKKFQNDLSEDSQNRLIKNPLRILDSKDKTDKEIISDAPKISDYYTKES- 229

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKG-- 304
                  Y     ++  +             RG++     +F F T+      A F G  
Sbjct: 230 ------SYFFDQVLNGLQALGIPYTVNSKLVRGLDYYCHTVFEFVTEDLGAQGAVFAGGR 283

Query: 305 ------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                 + G  H   +G  G G  R++  +   ++  K            I +I I    
Sbjct: 284 YDNLVSSVGGKHTPAIGFAG-GIERIMELI---NYAEKKER--------PIYIIPIGGEA 331

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMG---EQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +   +    + + L + G  V ++  G    ++  +   A+     + +I G + +S   
Sbjct: 332 E---EHALTLASELRRNGLYVIYEYSGTLKTRM-KKANQANAK---VVLIFGDEELSSKT 384

Query: 416 VEIKHRLTGIREDMSLEEVINYA 438
           ++IK+  TG  + ++ ++ +   
Sbjct: 385 LKIKNMDTGEEKMIARDKTVENI 407


>gi|113868337|ref|YP_726826.1| histidyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123032872|sp|Q0K963|SYH_RALEH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|113527113|emb|CAJ93458.1| Histidyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 456

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 137/448 (30%), Gaps = 75/448 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++     R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 29  KGMNDMLPADAPLWEHFENAARAMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMY 88

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 89  SFTDSLNGEQLTLRPEGTAAAVRATIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 144

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F    A +              M     R++  LGL  + +R E   +G   +HE    
Sbjct: 145 QFHQLGAEALGFAGPDVDAEIILMCQ---RLWDDLGL--VGVRLELNSLG--QAHERAAH 197

Query: 214 AD----------------------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            +                      T   +V  +K+     + +      D +   S+   
Sbjct: 198 REQLIKYLEGFQDILDDDSKRRLYTNPLRVLDTKNPALQEMAANAPKLIDFLGEESLAHF 257

Query: 252 -------WTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                           +    +  D              G + G I   G +Y  P+ A 
Sbjct: 258 EGVQRLLKANNIPFKINPRLVRGLDYYNLTVFEWITDKLGAQ-GTIAG-GGRY-DPLIAQ 314

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             G            + +G  R++  + E        + PD+ A   + L++     +  
Sbjct: 315 MGG-----KPAPACGWAMGIERIIELIREEG------VVPDA-AGCDVYLVH---QGEAA 359

Query: 362 RDACEKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV- 416
                    RL   G DV      D  G    SQ   AD  G    VI+G   V+   V 
Sbjct: 360 AQQAMIAAERLRDAGLDVVLHASPDGKGGSFKSQMKRADTSGAAYAVIIGDDEVAAGVVQ 419

Query: 417 --EIKHR----LTGIREDMSLEEVINYA 438
             E++ R      G +  +  E +++Y 
Sbjct: 420 VKELRQREQAEGGGQQATVPAEGLVDYL 447


>gi|2947036|gb|AAC05434.1| seryl-tRNA synthase [Buchnera aphidicola]
          Length = 427

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  G  AL    ++  + +    + G  E  VP L + D    +G+   +  ++
Sbjct: 158 SGARFIVMKGNIALLHRALSQFMLDLHTIKHGYTETYVPYLVNHDSLYGTGQLPKFTDDL 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
             +   + K  +  PT E  +T++F + I +   LP         FR E     R   G+
Sbjct: 218 FHINSIDKKKYVLIPTAEVPLTNLFSNQILNETELPIMLTAHTPCFRSEASSYGRDSKGL 277

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +     + PE S ++   +     ++   L L    +    G +G   +  
Sbjct: 278 IRLHQFDKVELVQI-IQPELSMNALELLTHHAEKVLQLLELPYRKVLLCGGEMGFSATKT 336

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E    +     ++    +  DF      T +
Sbjct: 337 YDLEVWFPSQKKYREISSCSNMSDFQARRMKTRY 370


>gi|283796156|ref|ZP_06345309.1| glycine--tRNA ligase [Clostridium sp. M62/1]
 gi|291076375|gb|EFE13739.1| glycine--tRNA ligase [Clostridium sp. M62/1]
 gi|295092207|emb|CBK78314.1| glycyl-tRNA synthetase, dimeric type [Clostridium cf.
           saccharolyticum K10]
 gi|295115529|emb|CBL36376.1| glycyl-tRNA synthetase, dimeric type [butyrate-producing bacterium
           SM4/1]
          Length = 462

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 146/447 (32%), Gaps = 60/447 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L ++  WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFV----QESPYNVGVDCAILMNSQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMI------YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +      ++         Y   +   M        +         + I          + 
Sbjct: 88  MDCKSCKERFRADKLIEDYMAANNIEMEGSVDGWSQEEMKQYIDDHNICCPSC----GKH 143

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGP 201
                R+F +    +F    E +K++      +   IF  +  K++       +    G 
Sbjct: 144 DFTDIRQFNLM-FKTFQGVTEDAKNTVYLRPETAQGIF--VNFKNVQRTSRKKIPFGIGQ 200

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IG    +E      T  T+ F   +   F  P  + ++        I    T        
Sbjct: 201 IGKSFRNEITPGNFTFRTREFEQMELEFFCEPGTDLEWFAYWKEFCINWLKTLGIKDDEM 260

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMS--------ATFKGA 305
              +   + L    + +   +E    F +G        T Y L             F   
Sbjct: 261 RARDHSPEELCFYSKATTD-LEFLFPFGWGELWGIADRTDYDLTQHQNTSGQDMTYFDDE 319

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKA 356
             + +   +    +GA RV  A + S++D + I          +  ++AP KI ++ +  
Sbjct: 320 KKEKYIPYVIEPSLGADRVTLAFLCSAYDEEEIGEGDVRTVLHFHPAIAPVKIGVLPLSK 379

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  EK+YA LSK   +  +DD G  IG ++   D +G P  V       +D  V
Sbjct: 380 K---LNEGAEKVYAELSKY-YNCEFDDRGN-IGKRYRRQDEIGTPFCVTYDFDSETDGAV 434

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R T  +  + + E+ NY   +F 
Sbjct: 435 TVRDRDTMEQVRIPIAELKNYFEDKFR 461


>gi|145219987|ref|YP_001130696.1| seryl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|189083579|sp|A4SFD5|SYS_PROVI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|145206151|gb|ABP37194.1| seryl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 430

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 10/202 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   ++  G +    +   + +    + G  E+  P + + +    +G++  +  E+ 
Sbjct: 164 GAGFPVYVGKGARLERALINFMLDSHTEKHGYKEVFPPFMVNRESLRGTGQWPKFAGEVY 223

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
                 +  +   PT E  +T++ R  +    +LP ++      FR E     +   G +
Sbjct: 224 ---HAPEDELYLIPTAEVPVTNLHRGELLETESLPISYAAYSACFRREAGSYGKETRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R  +F   +   F   PE S  +   +      I   L +    +   SG I  + +  +
Sbjct: 281 RVHQFNKVEMVKF-TKPEDSYQALEDIRGHAEAILRALEIPYRVLLLCSGDISANAAKCY 339

Query: 211 IVL-ADTGETQVFCSKDFMDFP 231
            +      E +   +    +F 
Sbjct: 340 DIEVWSPAEEKYLEASSCSNFE 361


>gi|323491632|ref|ZP_08096811.1| histidyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323314208|gb|EGA67293.1| histidyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 412

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 137/421 (32%), Gaps = 34/421 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP        +   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 5   LPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHI-KSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++   P   E      RS I  S  +      + +   FR E RP+ G  R R+F   
Sbjct: 65  GDSLTLRP---EGTAGCVRSCIENSLIDRSEQRLWYMGPMFRHE-RPQKG--RYRQFHQC 118

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
               F L           + +   R++  LG+    +R E   IG          A    
Sbjct: 119 GVEVFGLDGPDVDAE---LIMMTARLWRELGID-KHVRLELNSIGSLEDRANYRTALIAF 174

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRV 277
            +        D            + + N  V+         SD   E+         + +
Sbjct: 175 LEQHIDILDDDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKQHFAGLCELL 234

Query: 278 SARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
            A GIE         G  Y         +  + A      G  +   +   G  A   V 
Sbjct: 235 DAAGIEYSVNQRLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGGKATPAVG 294

Query: 327 AVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
             +      + ++  +++   ++     + +    +    A  K+   L +   G  V  
Sbjct: 295 FAMGL---ERLVLMLETLELTEVRRSVDVYMVTAGEGTMLAGMKLAETLREQVPGLRVMS 351

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              G     QF  AD +G  + +++G   V+D+ V +K  + G +E  S  +VI   S  
Sbjct: 352 HFGGGNFKKQFKRADKVGAAVALVLGENEVADNTVVLKDLIGGTQETYSQADVIAKLSEL 411

Query: 442 F 442
            
Sbjct: 412 V 412


>gi|239637294|ref|ZP_04678281.1| seryl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239597131|gb|EEQ79641.1| seryl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 428

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S  +  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EKPEDSWDALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|330994790|ref|ZP_08318712.1| Histidyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329758051|gb|EGG74573.1| Histidyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 415

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 131/430 (30%), Gaps = 77/430 (17%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            ++V    R   +  G  E S P  +   ++  S     D   KEM    DR  +++   
Sbjct: 18  FNHVVETARRIVSLYGFDEWSTPIFEDTRVFSRSLGDTSDVVSKEMYTFEDRGGESLTLR 77

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +     ++    ++LP   +     FR E RP+ G  R R+F    A       
Sbjct: 78  PEGTAAICRALVTNGL-TQSLPQKVFYAGPMFRYE-RPQKG--RYRQFHQIGAELLGAAE 133

Query: 168 EGSKHSYNKMFVSYLRIFHRLGL---------------------KSIPMRAESGPIGGDL 206
             +      M      +   LG+                      ++           DL
Sbjct: 134 PLADAEIIAMGR---DVLGALGIGDEVVLELNTLGDTASRDAWRTALITYFSDRR--DDL 188

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +     +    ++  SK   D  + ++    D  ++  +                   
Sbjct: 189 SADSQTRLERNPLRILDSKAQQDRALVADAPTIDQFLTPEA-------QEFWDGLRRTLD 241

Query: 267 LFDSLPENKRVSARGIEV-GHI------FYFGTKYSLPMSATFKG---ADGKDHYVQMGS 316
           +      +     RG++  GH          G + ++     + G     G      +G 
Sbjct: 242 VMGVPFRHNPRIVRGLDYYGHTAFEFVTERLGAQGTVLAGGRYDGLVAEMGGPATPAIG- 300

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +  G  R+   + ES  D           P  +++I + A     + A   +   +   G
Sbjct: 301 WAGGIERLSMLLAESPAD-----------PRPVAVIPMGAD---AQAAGLTVLQAIRAAG 346

Query: 377 CDVFWDDMG------EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                   G      E+     A          ++VGS  ++   V++K   +G + +++
Sbjct: 347 IRAETSYRGNMKRRMERANRMNATH-------AIVVGSDEIARGVVQVKDLDSGQQAEVA 399

Query: 431 LEEVINYASH 440
           ++ V ++   
Sbjct: 400 MDGVADFLRA 409


>gi|308272097|emb|CBX28705.1| Seryl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 431

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G K   ++   + E      G  E+  P + ++     +G+   +  ++ +L 
Sbjct: 169 FPLYFGAGAKLERSIINFMLEIHTTEHGYTEVLPPFIVNSQSLTSTGQLPKFKDDLFKL- 227

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+I ++ I    +LP  +      FR E     +   G++R  
Sbjct: 228 --EGWDYYMVPTAEVPVTNIHQNEILDESDLPILYTAYTPCFRSEAGSYGKDTKGLIRQH 285

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F + PE S     K+      I  RL L    +   +G +G   +     E
Sbjct: 286 QFNKVELVKF-VKPETSYDELEKLTQDAESILKRLNLPYRVVSLCAGDLGFSSAQTYDIE 344

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + A     ++    +F +F     N  F
Sbjct: 345 VWMPAQGVYREISSCSNFENFQARRGNIRF 374


>gi|254457173|ref|ZP_05070601.1| seryl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085965|gb|EDZ63249.1| seryl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 416

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 80/213 (37%), Gaps = 12/213 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G K    +   +    ++ G  E+SVP L +      +G+   +  ++ ++   + + +
Sbjct: 169 MGAKLERALINFMLNFNSKRGFEEVSVPALVNRTALEGTGQLPKFEDDLYKI---DGQEL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++++  I S   LP         FR E     R   G++R  +F   + 
Sbjct: 226 FLIPTAEVPVTNLYQDEILSADELPKKMTAYTSCFRKEAGAAGRDTRGMIRQHQFHKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            +    P+ S+  +++M      I   L L    +   +G +G   +H    E  +    
Sbjct: 286 VALS-KPDESEVIFDEMVECASDILTALELPHRIVNLCTGDLGFSAAHTTDIEVWLPGQN 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              ++    +  DF        F D    + + 
Sbjct: 345 QYREISSISNTRDFQARRAKIRFKDGNKNSIVH 377


>gi|296119853|ref|ZP_06838407.1| glycine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967007|gb|EFG80278.1| glycine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 459

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 124/351 (35%), Gaps = 48/351 (13%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFL 156
           D  +      P   + +   F++ + S R  P F    I   FR+E+ P   + R+REF 
Sbjct: 150 DDEEGLHYLRPETAQGIFVNFKNVMTSARMKPPFGIANIGKSFRNEITPGNFIFRTREFE 209

Query: 157 MKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
             +   F    E  + H Y     + L+ +  LG+    +R    P    LSH      D
Sbjct: 210 QMEMEFFVKPGEDEQWHQYW--IDNRLQWYVDLGVNPDNLRLYEHP-QEKLSHYSKRTVD 266

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                 F    + +    +  TD+                  +     +   FD    ++
Sbjct: 267 VEYAFGFAGSKWGELEGVANRTDY-------------DLRVHSEHSGEDLSYFD-QTTDE 312

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           R +   IE       G      M A    A  ++      S G    RVV          
Sbjct: 313 RWTPYTIEPA--AGLG----RSMMAFLVDAYTEEEVP--NSKGGTDTRVV---------- 354

Query: 336 KGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             +     ++P K++++ +   +++    ++  +K+   L  +  DV        IG ++
Sbjct: 355 --LKLDRRLSPVKVAVLPLSKKEELSTPAKEVADKLRG-LWNIDFDV-----SGAIGRRY 406

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              D +G P  V      + D+ V ++ R +  +E + ++E+  Y + R +
Sbjct: 407 RRQDEIGTPFCVTYDFDSLEDNAVTVRERDSMEQERVKIDELETYLAARLA 457


>gi|293396837|ref|ZP_06641111.1| serine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291420308|gb|EFE93563.1| serine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 430

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 16/209 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +    + G +E  VP L +      +G+   +G+++
Sbjct: 158 TGARFVVMKGQIARMHRALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDL 217

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                  +++        PT E  +T++ R  I    +LP         FR E     R 
Sbjct: 218 FHTKPLEEESDSSNYALIPTAEVPLTNLVRDEILEEESLPLKMTAHTPCFRSEAGSYGRD 277

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +     + PE S  +  ++     ++   L L    +   +G +G  
Sbjct: 278 TRGLIRMHQFDKVEMVQI-VRPEDSMDALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFG 336

Query: 206 LSH----EFIVLADTGETQVFCSKDFMDF 230
            S     E  + A     ++    +  DF
Sbjct: 337 SSKTYDLEVWLPAQNTYREISSCSNMWDF 365


>gi|254491288|ref|ZP_05104469.1| seryl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224463801|gb|EEF80069.1| seryl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 424

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 13/193 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    +   + +    + G  E  VP L +AD    +G+   + +++ ++   +D    
Sbjct: 170 AKLQRALTQFMLDTHSEQHGYTETYVPYLVNADSLRGTGQLPKFEEDLFKV---DDGQFY 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP  F      FR E     R   G++R  +F   +  
Sbjct: 227 LIPTAEVPVTNIVRDTISENTELPLRFVAHTPCFRSEAGSHGRDVRGLIRQHQFEKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P+ S  ++ ++     +I   L L    +   +G +G   +     E  + +   
Sbjct: 287 QI-VRPQDSAAAHEELTAHAEKILQLLELPYRKVNLCTGDLGFSSTKTYDLEVWLPSQNT 345

Query: 218 ETQVFCSKDFMDF 230
             ++    +F DF
Sbjct: 346 YREISSCSNFGDF 358


>gi|188588464|ref|YP_001919477.1| seryl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|238689621|sp|B2UX54|SYS_CLOBA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|188498745|gb|ACD51881.1| seryl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 425

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +   ++     ++     G  E+  P + + D    +G+   + ++  ++    +  
Sbjct: 171 LGARLERSIINYFLDKHTTENGYTEILPPYMVNRDSMTGTGQLPKFEEDAFKV---ENNG 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R+ + S   LP         FR E     R   G++R  +F   +
Sbjct: 228 YFLIPTAEVPVTNMYRNEVLSGDILPIKHAAYSACFRAEAGSAGRDTRGLVRQHQFNKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              F   PE S    +K+      +   LGL    +R   G +G
Sbjct: 288 LVKF-CKPEDSYAELDKLVEDAESVLQGLGLPYRIVRICKGDLG 330


>gi|154253470|ref|YP_001414294.1| seryl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|171769667|sp|A7HXK4|SYS_PARL1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|154157420|gb|ABS64637.1| seryl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 435

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 83/256 (32%), Gaps = 22/256 (8%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAI 67
            P++       L L   M  + +    G    +  GQ A     +   + +      G  
Sbjct: 137 APKEHFDLGEALGL---MDFEAAAKMSGARFTVLKGQLARLERAIGNFMVDLHTTEFGYE 193

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLR----LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           E++ P +   D    + +   +  +       LA  + +     PT E  +T++ R  I 
Sbjct: 194 EVAPPLMVRDDAMFGTAQLPKFEDDQFATFKGLARDDQEKYWLIPTAEVPLTNLVRESIL 253

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S   LP  F      FR E     R   G++R  +F   +  S   TPE S+  + +M  
Sbjct: 254 SEEELPKRFTAYTACFRAEAGSAGRDTRGMIRQHQFSKVELVSI-TTPEKSREEHERMLS 312

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
               +  RL L    M   +G +G         E  +       ++       DF     
Sbjct: 313 CAEEVLKRLDLHYRVMTLSTGDMGFASRKTYDIEVWLPGQNAFREISSCSVCGDFQARRM 372

Query: 236 NTDFDDIISLNSIVEQ 251
           N  +      N+    
Sbjct: 373 NARYRPKGEKNTRFVH 388


>gi|91786855|ref|YP_547807.1| seryl-tRNA synthetase [Polaromonas sp. JS666]
 gi|91696080|gb|ABE42909.1| seryl-tRNA synthetase [Polaromonas sp. JS666]
          Length = 468

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 31/268 (11%)

Query: 13  ENPRDA-EIASHKLMLR-TGMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQN-RT 64
           E P  A E+  H  + +  G+  +      G    +  GQ A     +   + + Q    
Sbjct: 154 EPPAFAFEVKDHVDVGQPLGLDFELGTKLTGSRFTVMKGQLARLHRALAQFMLDVQTLEH 213

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA---------DRN-----DKAMIYGPTH 110
           G  E   P + + D    +G+   +  ++ R+          D        +++   PT 
Sbjct: 214 GYTECYTPYIVNGDSLRGTGQLPKFEGDLFRVEAGLGLATAHDEQIAELTKRSLYLIPTS 273

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T+  R  I     LP  F      FR E     R   G++R  +F   +     + 
Sbjct: 274 EVPLTNFVRDEIVPEAQLPLKFTAHTPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQI-VH 332

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVF 222
           PE S  +   M      I  +LGL    M   +G +G   S     E  + A +   ++ 
Sbjct: 333 PEKSYEALEDMTGHAEMILQKLGLPYRVMLLCTGDMGFGASKTYDLEVWLPAQSTYREIS 392

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVE 250
              +   F        F +    N  V 
Sbjct: 393 SISNCEAFQARRLQARFKNAQGKNEFVH 420


>gi|217316855|gb|ACK37833.1| putative glutamyl-prolyl tRNA synthetase [Chorilia longipes]
          Length = 134

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  YV   S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETAEKQYVFQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  L+ +        A        C  + A L   G     D   
Sbjct: 74  GLLLPPRVASIQAILMPVGITAKTTEADKTSLYKVCRDLEAELRDSGVRAKCDLRD 129


>gi|90419386|ref|ZP_01227296.1| seryl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336323|gb|EAS50064.1| seryl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 427

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 20/201 (9%)

Query: 14  NPRDAEIASHKLMLRTGMI-HQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGA 66
            P++     ++L    G++  + +    G    +  GQ A     +   + +      G 
Sbjct: 137 APKEH----YELGEGLGLMDFEQAAKISGSRFTILKGQLARMERALGQFMLDLHTGEHGY 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E + P L   +    +G+   + +++   +    +     PT E  +T++ R  +    
Sbjct: 193 QETAAPLLVRDEALFGTGQLPKFSEDLFHTS----EGRWLIPTAEVPLTNMVREQMLGAG 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP  F  +   FR E     R   G++R  +F   +  S       S   + +M  +  
Sbjct: 249 DLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFYKVELVSV-TDEGSSIAEHERMTAAAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIG 203
            +  RLGL    +   +G +G
Sbjct: 308 EVLKRLGLSYRVVTLCAGDMG 328


>gi|56461133|ref|YP_156414.1| histidyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81678386|sp|Q5QYB0|SYH_IDILO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56180143|gb|AAV82865.1| Histidyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 415

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 138/425 (32%), Gaps = 47/425 (11%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP    A   V A+IR      G  E+ +P L+S  L+  S G   D   KEM    DRN
Sbjct: 5   LPEQSPAWQQVEAVIRRVAASYGYSEIRMPVLESTQLFKRSIGEVTDIVEKEMYTFDDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P            H   Y  +    + +   FR E RP+ G  R R+F     
Sbjct: 65  GESVTLRPEGTASCVRAGNQHGLLYNQI-QRLWYMGPMFRYE-RPQKG--RYRQFHQFGI 120

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG--- 217
            +F L    +      + +   R++   GL    +  +   +G + +      A      
Sbjct: 121 ETFGLESADADAE---VILLSARLWREFGLAD-QVELQLNSLGSNEARANYRDALKAYLS 176

Query: 218 --ETQVFCSKDFMDFPIPSENTDFDDIISLNSI--------VEQWTAPYAATSDVHNEKL 267
             E+++           P    D  D  +   +             +           + 
Sbjct: 177 DYESELDDDSKRRLESNPLRILDSKDEKTQKILEGAPSLSEYWDAESKEHFEQLTARLEA 236

Query: 268 FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--GKDHYVQMGS 316
                       RG++     +F       G + ++     + G      GK        
Sbjct: 237 AGISYTLNERLVRGLDYYNRTVFEWVTTALGAQGTVCAGGRYDGLVEQLGGKATPAV--G 294

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           + +G  R+V  +       +G + P  V      L+ +    ++      E++   L + 
Sbjct: 295 FAMGMERLVLLL-----QEQGKLTPRRV--VDAYLMPLGEEAELNAPRIAEQLRNELPE- 346

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
              +     G  +  Q   AD  G  + +I+G+  ++   V +K  R    ++ +  + +
Sbjct: 347 -LRLVSHCGGGSMKKQMKKADKSGAQVALIIGADEIAQQLVTVKPLRTAEEQQTLGWQAL 405

Query: 435 INYAS 439
           I +  
Sbjct: 406 IEFLQ 410


>gi|257094687|ref|YP_003168328.1| seryl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047211|gb|ACV36399.1| seryl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 427

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 12/225 (5%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  GQ A     +   + +    + G  E+  P L +    + +G+   + +++
Sbjct: 158 AGTRFSLMKGQLARLHRVLAQFMLDTHVGQHGYTEVYAPYLVNGASLLGTGQLPKFEEDL 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            ++   + + +   PT E  +T+I R  I     LP         FR E     R   G+
Sbjct: 218 FKILRADAEPLYLIPTAEVPVTNIVRGEILPAEALPLKLVCHTPCFRSEAGSYGRDTRGM 277

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S  ++ ++     RI   L L    +   +G +G   +  
Sbjct: 278 IRQHQFDKVELVQIVA-AEDSIAAHEELTAHAERILELLDLPYRRVALSTGDMGFSSAKT 336

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              E  + A     ++    +F  F        + +  +   +V 
Sbjct: 337 YDLEVWLPAQNAYREISSCSNFEAFQARRMQARYRNERNKTELVH 381


>gi|303231013|ref|ZP_07317756.1| serine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514395|gb|EFL56394.1| serine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 426

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  + D     
Sbjct: 168 LGARLERALINFMVDLHVDKQGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVEDT---E 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHSGEILSEDELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S +   K+  +   +   L L    +   +G IG   +     E  + A 
Sbjct: 285 MVKLS-KPEDSWNELEKLTDNAEEVLRLLELPFRVITLCTGDIGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 NKYREISSCSNMTDFQARRANIKF 367


>gi|255658869|ref|ZP_05404278.1| serine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260849274|gb|EEX69281.1| serine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 426

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +   N+ G  EM  P + + +    +G+   +  +M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHANKHGYTEMLAPYIANKESMTGTGQLPKFADDMFKL--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 221 EGLDYYLVPTAEVPTTNYHRDEILDGNKLPEYYSCYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFI 211
              +   F + PE S H  + M  +   +   L L    ++  +G +          E  
Sbjct: 281 NKVELIKF-VKPETSWHELDTMVDAAEDVLRLLELPYHVVKLCTGDMSFTSATTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
             A     ++    +  D+     N  F
Sbjct: 340 FPAQNKYREISSCSNCTDYQARRANIKF 367


>gi|321441329|gb|ADW85079.1| glu- + pro-tRNA synthetase [Prionoxystus robiniae]
          Length = 134

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G ++S      F   + ++  YV   S+G    R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQQFSKMFEIVFDDPETQEKEYVYQNSWGFT-TRSIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++             Q   D+C+++   L  V      D       
Sbjct: 74  GLVLPPRVASVQVIVVPCGITASSSAEERQKLTDSCKQLVDELIDVDIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|90579108|ref|ZP_01234918.1| seryl-tRNA synthetase [Vibrio angustum S14]
 gi|90439941|gb|EAS65122.1| seryl-tRNA synthetase [Vibrio angustum S14]
          Length = 435

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G  EM VP L +AD    +G+   +G+++
Sbjct: 160 TGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTEMYVPYLVNADSLFGTGQLPKFGEDL 219

Query: 94  L-------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
                   ++ D   + +   PT E  +T++ R  I    +LP         FR E    
Sbjct: 220 FHTQPLTEKVNDEEPRVLSLIPTAEVPVTNMMRDTITDEADLPVKMTAHTPCFRSEAGSY 279

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +       PE S  +  ++     ++   L L    +   +G +
Sbjct: 280 GRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEELTGHAEKVLQLLELPYRKVVLCTGDM 338

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G         E  V A     ++    +  DF        F
Sbjct: 339 GFGACKTYDLEVWVPAQETYREISSCSNMWDFQARRMQARF 379


>gi|300856530|ref|YP_003781514.1| histidyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300436645|gb|ADK16412.1| histidyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 416

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 68/434 (15%), Positives = 123/434 (28%), Gaps = 40/434 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M  Q  KG    LP        +    +      G  E+  P  +  +L+        D 
Sbjct: 1   MAIQAPKGTKDILPTESYKWHYLEDKFKNIAASYGYREIRTPVFEYTELFERGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++             F          P   +      R E      
Sbjct: 61  VQKEMYTFQDKAGRSLTLKAEGTSPAVRAFVESSLYNEVQPTKLFYFTPVLRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R RE       +F             +    +R++  LG+K I +   S  IG     
Sbjct: 118 KGRLREHHQFGIEAFGAENASLDAE---VISLAMRVYKELGVKGIELNINS--IGCATCR 172

Query: 209 EFIVLADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +    A      + + +         S+N        + S  E           + ++  
Sbjct: 173 KKYNEALKKFLKENYDALCDTCKSRFSKNPMRILDCKVESCKEIVKDAPLMIDYLCDDCK 232

Query: 268 FDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGAD----------------GKD 309
                  K +SA  IE  +  +   G  Y           D                G  
Sbjct: 233 EHFESLQKYLSAVNIEFKINPLIVRGLDYYTKTVFEIINNDITICGGGRYDYLIEEVGGP 292

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G +G+G  R +  +     +   I  P+   P+ I L      D   +     + 
Sbjct: 293 KMPAVG-FGMGIERTLLTL-----EENKIEIPNR--PY-IDLYVGAMGDD-AKLKALNLV 342

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L +       D     + ++   A+ +G    VI+G   +     + K    G + ++
Sbjct: 343 NQLREKNVRCECDHTNRSVKAEMKYANKIGARFTVILGDNELECGIAKFKRMEDGNQFEI 402

Query: 430 SLEEVINYASHRFS 443
            LEE+ +  S    
Sbjct: 403 KLEEL-DKISDLIR 415


>gi|262305763|gb|ACY45474.1| glu- + pro-tRNA synthetase [Hexagenia limbata]
          Length = 134

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  +V   S+GI   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETQEKKFVYQNSWGIT-TRTIGVMIMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQVCRDA---CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++         ++        C+++   L      V  D       
Sbjct: 74  GLVLPPRVACIQVVIVPCGITANMKEEDKAALLTSCQELEDALKSKNVKVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|73667073|ref|YP_303089.1| seryl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|123745850|sp|Q3YS14|SYS_EHRCJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|72394214|gb|AAZ68491.1| seryl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 423

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P L         G+   +  +  +  +         PT
Sbjct: 173 RALANFMLDIHTKEFGYSEISHPILVHESAMYGVGQLPKFADDSFKTTEN----FRLVPT 228

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++      +  +LP         FR E     +   G+MR  +F   +  S  +
Sbjct: 229 SEVALTNLVSGMNINSCDLPIRLTACSPCFRLEAGSAGKDTRGMMRQHQFNKVELVSI-V 287

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----HEFIVLADTGETQV 221
           T E S     +M      +  RL L    M   +G +G   S     E  V +     ++
Sbjct: 288 TEEQSASELERMVQVAEEVLKRLELPYRVMMLCTGDMGFSASITYDIEVWVPSQNRYREI 347

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               +  DF     NT +  I +   + +   
Sbjct: 348 SSCSNCKDFQARRMNTKYTTITNNVKVSKFAH 379


>gi|257888147|ref|ZP_05667800.1| histidyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257899578|ref|ZP_05679231.1| histidyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293571371|ref|ZP_06682402.1| histidyl-tRNA synthetase [Enterococcus faecium E980]
 gi|257824201|gb|EEV51133.1| histidyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257837490|gb|EEV62564.1| histidyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291608587|gb|EFF37878.1| histidyl-tRNA synthetase [Enterococcus faecium E980]
          Length = 430

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 134/437 (30%), Gaps = 35/437 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP   +    V    R         EM  P  +  ++   S     D 
Sbjct: 1   MSFQRPKGTNDILPGESEKWQFVEETARLLFRDYQYNEMRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPR 146
             KEM    D+ ++ +   P     +   F  H         PF  + +   FR E RP+
Sbjct: 61  VSKEMYDFYDKGERHVTLRPEGTAPIVRSFVEHKLFGPEYAKPFKTFYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESG 200
            G  R R+F      +F    E        M ++ L  F +LG+  I +        ++ 
Sbjct: 120 KG--RLRQFHQIGVEAFGS--ENPATDVESMVMA-LDFFKQLGITQIRLVINSLGDKDTR 174

Query: 201 PIGGDLSHEF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                   ++     A+  E       +     + S++      ++    +  + +  A 
Sbjct: 175 QAYRQALIDYLLPFEAELSEDSKRRLHENPLRVLDSKDKRDQKFVADAPSILDYLSEPAQ 234

Query: 259 TSDVHNEKLFDS---LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                   + D+     E      RG++    +Y  T + +   A   GA  +      G
Sbjct: 235 KHFDTVVSMLDALAVPYEIDSNMVRGLD----YYTHTIFEIMSDAPKMGA--QATICAGG 288

Query: 316 SYGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDA-------CEK 367
            Y      +            GI     ++   ++ +      D               K
Sbjct: 289 RYDNLVEELGGPSTPGFGFAMGIERLLLTMEAEEVVIPAFNELDAYVVALGDETNIEALK 348

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   +   G     D M  +  +QF  AD     L +++G   ++   + +K   +   +
Sbjct: 349 VVQAIRNFGFSADRDFMNRKAKAQFKTADKANAKLVLVIGEDELASQTINVKAMASRKEK 408

Query: 428 DMSLEEVINYASHRFSN 444
              LEE+  +    +  
Sbjct: 409 SFPLEEIYEHFDEVYDE 425


>gi|206577361|ref|YP_002239454.1| seryl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|238065104|sp|B5XY99|SYS_KLEP3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|206566419|gb|ACI08195.1| seryl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 430

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHGGLDFAAAVKLTGSRFVVMKGQLARLHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMVALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKVALCTGDMGFSACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|332686838|ref|YP_004456612.1| histidyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332370847|dbj|BAK21803.1| histidyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 429

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 141/430 (32%), Gaps = 37/430 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    +    R         E+  P  ++ ++   S     D 
Sbjct: 1   MKYQRPKGTNDLLPSMSEKWQFIEETARLLFKDYQYKEIRTPIFENYEVIARSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL-----PFTFYQIQLKFRDEL 143
             KEM    D+ D+ +   P   E    I RS +++         P+  Y +   FR E 
Sbjct: 61  VSKEMYDFYDKGDRHITLRP---EGTAPIVRSFVENKLFGPEYAKPYKTYYMGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP+ G  R R+F      +F             M + Y   F++LG+K I +   S    
Sbjct: 117 RPQAG--RLRQFHQIGIETFGSENPAIDVEGMAMALDY---FNQLGIKQIKLVINSLGDK 171

Query: 204 GDLSHEFIVLADTGE---TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
              ++    L D  E    ++        +  P    D  D    +  V           
Sbjct: 172 ETRTNYRQALIDYLEPRIDELSEDSRRRLYNNPLRVLDSKDK--KDQFVVSEAPSILDYL 229

Query: 261 DVHNEKLFDSLPENKRVSARGIEV------GHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              ++  FD++           E+      G  +Y  T + +   A   GA  +      
Sbjct: 230 SEKSKVHFDTVINMLNALNITYEIDSNMVRGLDYYTNTIFEIMSEAPGMGA--QASICAG 287

Query: 315 GSYGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDACE------- 366
           G Y      +            G+     ++   ++++ +    D       E       
Sbjct: 288 GRYDGLVEELGGPATSGFGFAMGVERLLLTMEAEQLTIPSADYLDVYVVGIGEEANLESL 347

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   +   G     D M  +  +QF  AD L   L + +GS+ + +  V+I+       
Sbjct: 348 KLVQAIRNFGFSADRDFMNRKPKAQFKTADKLKAQLVLTIGSEELLERNVKIRSLKDHKE 407

Query: 427 EDMSLEEVIN 436
           +  S +EV +
Sbjct: 408 QTFSFDEVYD 417


>gi|310778421|ref|YP_003966754.1| seryl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309747744|gb|ADO82406.1| seryl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 423

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 10/171 (5%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +      G  E   P L   D+   +G+   +  +M +  D     
Sbjct: 168 LGARLERALINFMLDLHTTEHGYTEHITPFLVRRDICEGTGQLPKFEDDMYKTTDE---- 223

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           M    T E  +T++ R  I    +LP  +      FR E     R   G++R  +F   +
Sbjct: 224 MFLISTSEITLTNLHRKEILEESDLPKYYTAHSPCFRREAGSYGRDVKGLIRQHQFNKVE 283

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
                 TPE S    +KM V+   +  +LGL    ++  SG IG   +  +
Sbjct: 284 MVKI-TTPENSYDELDKMVVNAETVLQKLGLPYRLVQLCSGDIGFSAAKTY 333


>gi|283833814|ref|ZP_06353555.1| serine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291070481|gb|EFE08590.1| serine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 430

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +    TG+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHTGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++      +++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDALPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMEALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|262305741|gb|ACY45463.1| glu- + pro-tRNA synthetase [Hanseniella sp. 'Han2']
          Length = 134

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +       F+  +  +  +    S+G+   R +  ++    D +
Sbjct: 15  SGRAIQGATSHHLGQNFXKMFEIIFEDPETSEKQFAHQNSWGLT-TRTIGVLVMVHGDNQ 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  ++ +I                   CE+    LS  G     D       
Sbjct: 74  GLVLPPRIASIQVVIIPCGITANMADTDRTKLTAKCEEYNRLLSAGGIRCKLDSRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|255660022|ref|ZP_05405431.1| seryl-tRNA synthetase [Mycoplasma genitalium G37]
          Length = 375

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 13/219 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             ++     K L  +  ++ +  N++   E ++P + +      +G+   +  ++ +L  
Sbjct: 159 FVAYTDKAAKLLRAITNLMID-LNKSKYQEWNLPVVINELSLRSTGQLPKFKDDVFKL-- 215

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +      PT E  + ++  + I +  +LP  +    + FR E     +   G +R  +
Sbjct: 216 -ENTRYYLSPTLEVQLINLHANEIFNEEDLPKYYTATGINFRQEAGSAGKQTKGTIRLHQ 274

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE + +    M     +I   L L    +   +G +G         E 
Sbjct: 275 FQKTELVKF-CKPENAINELEAMVRDAEQILKALKLPFRRLLLCTGDMGFSAEKTYDLEV 333

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + A     +V       DF        + DI +  +++
Sbjct: 334 WMAASNEYREVSSCSSCGDFQARRAMIRYKDINNGKTVM 372


>gi|229128599|ref|ZP_04257577.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-Cer4]
 gi|228654792|gb|EEL10652.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-Cer4]
          Length = 428

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 143/444 (32%), Gaps = 67/444 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 10  KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 70  LQDQGKRELALRYDLTIPFAKVVAMNPNLR--LPFKRYEIGKVFRD---GPIKQGRFREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ES  I  +L
Sbjct: 125 IQCDVDIVGV--ESVMAEAELMAMAF-ELFRTLNLEITIQYNNRKLLNGILESINIPTEL 181

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +              +N  
Sbjct: 182 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPL 240

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 241 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGGR 300

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 301 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADVFIIPLG 349

Query: 356 AHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              Q     C +I  +L       V  +  G ++      A+    P  +I+G   +S +
Sbjct: 350 TELQ-----CLQIAQQLRSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTN 404

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
            V +++   G    + +  +  Y 
Sbjct: 405 TVVLRNMKEGSEVKVPISSLSRYL 428


>gi|107029010|ref|YP_626105.1| histidyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|116689832|ref|YP_835455.1| histidyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|123179919|sp|Q1BGX3|SYH_BURCA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227947|sp|A0K7T5|SYH_BURCH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|105898174|gb|ABF81132.1| histidyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|116647921|gb|ABK08562.1| histidyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
          Length = 446

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 139/442 (31%), Gaps = 59/442 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRASIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +       +      M     R++  LGL  I +          RA      
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F  + D  E             + ++N    DI      +  +    +      
Sbjct: 188 IKYLEQFADVLD--EDAKRRLYTNPLRVLDTKNPALQDIAQNAPKLIDFLGDESRAHFEG 245

Query: 264 NEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHY 311
            ++L  +     +      RG++     +F       G + ++     +           
Sbjct: 246 LQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKP 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIY 369
                + +G  R    ++E   +         +AP +  + +  +   D   R+      
Sbjct: 306 TAACGWAMGIER----ILELLKEED-------LAPEQEGVDVYVVHQGD-TAREQAFIAA 353

Query: 370 ARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
            RL   G DV +    D       SQ   AD  G    VI G + V++  V +K  R  G
Sbjct: 354 ERLRDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAG 413

Query: 425 ------IREDMSLEEVINYASH 440
                 +++ + +E +  +  +
Sbjct: 414 AEGEKNVQQTVPVESLTEFLIN 435


>gi|325281010|ref|YP_004253552.1| glycyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324312819|gb|ADY33372.1| glycyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 517

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 112/354 (31%), Gaps = 50/354 (14%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M              +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 197 MFATEMGSTAEGASKIYLRPETAQGIFVNFLNVQKTGRMKVPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      + K   + +R    LG              G+ +
Sbjct: 257 FIFRMREFEQMEMQFF-VRPGSELEWFKKWKTTRMRWHQLLGF-------------GEEN 302

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           + F             +     FP   +  +     +   + +              E  
Sbjct: 303 YRFHDHEKLAHYANAATDIEFKFPFGFKEVEGIHSRTDFDLSQHQQYSGKKIQYFDTELN 362

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +P     S     +G    F    S          DGK              RVV  
Sbjct: 363 ESYVPYVIETS-----IGVDRMFLQIMSAAYCEEDLSKDGKQD-----------SRVV-- 404

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +  P ++AP K++++ +   D    +  ++I   L K   +  +D+  + 
Sbjct: 405 ----------LRLPAALAPVKMAIMPLVKKD-GLPEKAQEIMN-LLKYDFNCQYDE-KDS 451

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           IG ++   D +G P  + V  + + D  V I+ R T  +E ++++++      +
Sbjct: 452 IGKRYRRQDAIGTPFCITVDHQTLEDHAVTIRDRDTMQQERVAIDQLFGILKEK 505


>gi|321441317|gb|ADW85073.1| glu- + pro-tRNA synthetase [Lagoa crispata]
          Length = 134

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++     + G  +S      +   + ++  YV   S+G+ + R +  ++    D +
Sbjct: 15  SGRGVQGATSHHLGQNFSKMFEVVYDDPETQEKRYVYQNSWGL-STRTIGVMVLIHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++             +   D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRIADIQAIVVPCGITASSTTEDRKKLYDSCKVLVDELVAAGIRAEGDYRENYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|315647593|ref|ZP_07900695.1| histidyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315277032|gb|EFU40373.1| histidyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 426

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 131/449 (29%), Gaps = 68/449 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY---DSYG 90
           Q+ KG Y +    Q     V + +R+        EM    L   +L   S +Y   +   
Sbjct: 2   QNVKGTYDYFGKEQAVRRKVQSTLRDVFESYDYEEMESTILNERELL--SSKYAGGEEIQ 59

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM +L D+  + +            +          LPF  +++   FRD         
Sbjct: 60  KEMYQLTDQGKRDLGLRYDLTIPFAKVIA--FNPGIELPFKRFEMGKVFRD---GPVKRG 114

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REFL  D     +   G +     M ++    F RL +  +     S    G++    
Sbjct: 115 RLREFLQCDVDVVGIP--GPEAEVELMQLAV-EAFRRLEIPVLLRWNNSR-FLGEVLESM 170

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ-----------WTAPYAAT 259
            V A+   T +                +    +    + +            +       
Sbjct: 171 GVPAEMKSTVMLTLDKIEKIGREGVRQELVSKVLAPEVCDHILEFVDLKEPSFEQIVGRY 230

Query: 260 SDVHNEKLFDSLPENKRVSARGIEV----------GHIFYFGTKYS-------------- 295
               N    +       +   G+E           G  FY GT Y               
Sbjct: 231 RVGDNPGAREVQMLQDMLQRVGLEQDCVFDPFLSRGLSFYTGTVYEIFDVSGSYRSSLGG 290

Query: 296 ----LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                 + A   G D   +     S+G+ +       I      +    P   +  ++ +
Sbjct: 291 GGRYDAIIAHLVGRDDIAYPTVGLSFGMES-------IMEMIRNR----PMGTSKPQVIV 339

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I I         A     A L   G    +   G ++    + A   G P  +++G +  
Sbjct: 340 IPIGDAIPEGLRAA----AVLRNQGLRTEFAHNGRKLKKTLSKASSDGIPYVILIGEEEA 395

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +  +V +K         M LEEV+ +   
Sbjct: 396 AAGQVRLKDMHENTEVQMRLEEVVAFMKQ 424


>gi|313894660|ref|ZP_07828223.1| serine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313440850|gb|EFR59279.1| serine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 426

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  + D     
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVEDT---E 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGDEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S      +  +   +   L L    +   +G +G   +     E  + A 
Sbjct: 285 MVKL-AKPEDSFKELETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|259501267|ref|ZP_05744169.1| serine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|302191075|ref|ZP_07267329.1| seryl-tRNA synthetase [Lactobacillus iners AB-1]
 gi|309803335|ref|ZP_07697430.1| serine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|309807340|ref|ZP_07701309.1| serine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|309809016|ref|ZP_07702890.1| serine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|312871091|ref|ZP_07731193.1| serine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872053|ref|ZP_07732128.1| serine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312873500|ref|ZP_07733550.1| serine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|312875339|ref|ZP_07735347.1| serine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|315653217|ref|ZP_07906140.1| serine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|325911293|ref|ZP_08173706.1| serine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|325913547|ref|ZP_08175912.1| serine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|329920825|ref|ZP_08277412.1| serine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|259167394|gb|EEW51889.1| serine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|308164499|gb|EFO66751.1| serine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|308166322|gb|EFO68532.1| serine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308170672|gb|EFO72691.1| serine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|311089173|gb|EFQ47609.1| serine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|311091009|gb|EFQ49403.1| serine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311092346|gb|EFQ50715.1| serine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311093419|gb|EFQ51761.1| serine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|315489380|gb|EFU79019.1| serine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|325476853|gb|EGC80006.1| serine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|325477126|gb|EGC80273.1| serine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|328935605|gb|EGG32072.1| serine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 436

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E  + G  E+  P L + D    +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVFNFFLDENVKAGYTEVIPPYLVNYDSMQGTGQFPKFTEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I   + LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRELTLIPTAEVPLVNYFRDKILDIKQLPINVTAMSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        + S    +K+  +   +  +L L    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKI-CDEDSSWQELDKLTKNAEHLLQKLELPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             E  + A     ++    +  DF        + D
Sbjct: 342 DLEVWMPAQNQYREISSCSNCTDFQARRSLIRYRD 376


>gi|253681235|ref|ZP_04862033.1| glycine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253562473|gb|EES91924.1| glycine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 463

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 116/354 (32%), Gaps = 73/354 (20%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + +     +   P T + +  +   +   S + +PF   QI   FR+E+ P  
Sbjct: 155 MFKTFQGVTEDTTSEIYLRPETAQGIFVNFKNAQRTSRKKVPFGIGQIGKSFRNEITPGN 214

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      ++       +    LG                ++
Sbjct: 215 FTFRTREFEQMELEFF-CKPGTDLEWFHYWKDYCWKFLLDLG----------------MT 257

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +   D GE ++               + + +  S    +  +            +  
Sbjct: 258 EENLRFRDHGEEEL---------------SFYSNATSDIEFLFPFGWGELWGIADRTDYD 302

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
                E+                          T+      + +   +    +GA RV  
Sbjct: 303 LKKHMEHSGQ---------------------ELTYLDPTTNEKYVPYVIEPSLGADRVAL 341

Query: 327 AVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A +  ++D + +             ++APFK +++ +        +   ++Y +LSK   
Sbjct: 342 AFLVDAYDEEELENGDTRTVLHLHPALAPFKAAILPLSKK---LSEKALEVYGKLSKK-F 397

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           ++ +D+ G  IG ++   D +G P  + V    + D+ V ++ R    +  + +
Sbjct: 398 NIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLQDNTVTVRDRDNMTQVRLKI 450


>gi|310767171|gb|ADP12121.1| seryl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 430

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 20  IASH-KLMLRT-GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H +L  R  G+    +    G    +  GQ AL    ++  + +    + G  E  V
Sbjct: 136 VRDHVELGERAAGLDFAAAVKLTGSRFIVMKGQIALMHRALSQFMLDLHTEQHGYQETYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRN 127
           P L +      +G+   +G+++      +++A        PT E  +T++ R  I    +
Sbjct: 196 PYLVNHASLNGTGQLPKFGEDLFHTRPLDEEASSSNYALIPTSEVPLTNLVRDEILEEES 255

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +       PE S  +  ++     +
Sbjct: 256 LPLKMTAHTPCFRSEAGAYGRDTRGLIRMHQFDKVEMVHV-TRPEDSMDALEELVGHAEK 314

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +   L L    +   +G +G         E  + A     ++    +  DF
Sbjct: 315 VLQLLNLPYRKVLLCTGDMGFGAQKTYDLEVWLPAQDTYREISSCSNMGDF 365


>gi|262305753|gb|ACY45469.1| glu- + pro-tRNA synthetase [Libinia emarginata]
          Length = 134

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  YV   S+G+   R V  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIFEDPETAEKKYVFQNSWGLT-TRTVGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  L+ +        A       AC  + A L   G     D   
Sbjct: 74  GLLLPPRVASVQAILMPVGITAKTAEADKNSLYKACRDLEAELQASGVRAKCDLRD 129


>gi|253998905|ref|YP_003050968.1| seryl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253985584|gb|ACT50441.1| seryl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 429

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 16/200 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  GQ A     +   + + Q  R G  E   P + +AD    +G+   +  ++
Sbjct: 157 AGARFTLMRGQIARLHRALAQFMLDTQTERHGYTECYTPYIVNADSLRGTGQLPKFEADL 216

Query: 94  LRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                   +   +A+   PT E  +T+  R  I +  +LP         FR E     R 
Sbjct: 217 FAAQKGGQEGEGEALYLIPTSEVTLTNTVRDEILAAESLPIKLTAHTPCFRSEAGSYGRD 276

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +     + PE S  +  +M      I   LGL    +   +G +G  
Sbjct: 277 TRGMIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAEYILQALGLPYRVVSLCTGDMGFG 335

Query: 206 LSH----EFIVLADTGETQV 221
            +     E  + A     ++
Sbjct: 336 AAKTYDLEVWLPAQNTYREI 355


>gi|212640589|ref|YP_002317109.1| glycyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212562069|gb|ACJ35124.1| Glycyl-tRNA synthetase (class II) [Anoxybacillus flavithermus WK1]
          Length = 460

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 64/444 (14%), Positives = 146/444 (32%), Gaps = 56/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML--- 94
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGTELKNNIKRAWWKKFVQQSPYNVGLDAAILMNPRTWEASGHLGNFNDPMIDCK 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +   R+    +     E    ++    +   + +     +  +   D     F  +R  +
Sbjct: 92  QCKARHRADKLIEGALEAKGIEMVVDGLPFEK-MEQLIQEHDIACPDCGSRDFTNIR--Q 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRL--GLKSIPMRAESGPIGGDL 206
           F +       +T   +   Y +      +FV++  +   +   L     +     IG   
Sbjct: 149 FNLMFKTFQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQ-----IGKSF 203

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E      T  T+ F   +   F  P E   + D           +      +    + 
Sbjct: 204 RNEITPGNFTFRTREFEQMELEFFCKPGEELQWFDYWRQYCEQWLLSLGMKRENIRLRDH 263

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD--------GK 308
             D L      +    ++ + F FG          T Y L     + G D         +
Sbjct: 264 SEDELSHYSNATT---DIEYKFPFGWGELWGIASRTDYDLRRHMEYSGEDFHYLDQETNE 320

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGII---------WPDSVAPFKISLINIKAHDQ 359
                     +GA RV  A +  +++ + +             ++AP+K +++ +     
Sbjct: 321 RFIPYCIEPSLGADRVTLAFMIDAYEEEQLADGTTRTVMHLHPALAPYKAAVLPLSKK-- 378

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +    I+ +LS+    V +D+ G  IG ++   D +G P  +        D  V ++
Sbjct: 379 -LSEGARAIFEQLSQH-FMVDYDESG-SIGKRYRRQDEIGTPFCITYDFDSEQDQMVTVR 435

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + + E+ ++   +  
Sbjct: 436 DRDTMEQTRIPIAELKSFLEEKIQ 459


>gi|187934733|ref|YP_001884277.1| seryl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|238691597|sp|B2THC5|SYS_CLOBB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|187722886|gb|ACD24107.1| serine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 425

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +   ++     ++     G  E+  P + + D    +G+   + ++  ++    +  
Sbjct: 171 LGARLERSIINYFLDKHTTENGYTEILPPYMVNRDSMTGTGQLPKFEEDAFKV---ENNG 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R+ + S   LP         FR E     R   G++R  +F   +
Sbjct: 228 YFLIPTAEVPVTNMYRNEVLSGDILPIKHAAYSACFRAEAGSAGRDTRGLVRQHQFNKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              F   PE S    +K+      +   LGL    +R   G +G
Sbjct: 288 LVKF-CKPEDSYAELDKLVEDAESVLQGLGLPYRIVRICKGDLG 330


>gi|116251809|ref|YP_767647.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|166223278|sp|Q1MHM2|SYS_RHIL3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|115256457|emb|CAK07541.1| putative seryl-tRNA synthetase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 427

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G IE+S P +   +    + +   + +++ R  D         PT
Sbjct: 176 RALGQFMIDLHTSEHGYIEVSSPLMVRDEAVYGTAQLPKFAEDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVREEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E +   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 291 DAESAVAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSVCGDFQGRRMNARY 368


>gi|269302656|gb|ACZ32756.1| seryl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 427

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 10/217 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   + ++Q   G      P L   ++   SG+   +  +  R
Sbjct: 159 GSGWPAYKNRGVLLEWALLTYMLQKQAAHGFQLWLPPLLVKKEILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
           + D  ++ +   PT E V+       I + + LP  +      FR E         G++R
Sbjct: 219 VED-GEQYLYLIPTAEVVLNGFRSQDILTEKELPLYYAACTPCFRREAGAAGAQERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   + ++F  TP     +Y KM      +   L L        +G +    S    
Sbjct: 278 VHQFHKVEMFAF-TTPNQDDIAYEKMLSIVEEMLTELKLPYRLSLLSTGDMSFTASKTID 336

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            E  +       +V       DF      T + D   
Sbjct: 337 AEVWLPGQKAFYEVSSISQCTDFQSRRSGTRYKDSQG 373


>gi|183222806|ref|YP_001840802.1| seryl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912838|ref|YP_001964393.1| seryl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|238687768|sp|B0S8Z4|SYS_LEPBA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238687846|sp|B0SRZ1|SYS_LEPBP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167777514|gb|ABZ95815.1| Serine--tRNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781228|gb|ABZ99526.1| Seryl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 418

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y++  LG K   ++  ++ +      G  EM VP L + +    +G+   + ++  RL 
Sbjct: 164 FYTYRGLGAKLERSLMNLMLDTHTSENGYEEMWVPVLVNDESMTATGQLPKFAEDFYRL- 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 +   PT E  +T+ +R  I   + LP +       FR E     R   G++R  
Sbjct: 223 --EKDGLNLIPTAEVPLTNYYRDEIIQEKELPISVCAHTSCFRREAGSYGRDTRGLVRVH 280

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S  ++ KM      I  +L L    M   S  +    S  + + 
Sbjct: 281 QFQKVELVKF-VEPEKSGEAHEKMLQDAESILQKLKLPYRVMLLCSKDMSSASSKTYDIE 339


>gi|15618779|ref|NP_225065.1| seryl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836403|ref|NP_300927.1| seryl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752169|ref|NP_445536.1| seryl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242230|ref|NP_877171.1| seryl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|8928381|sp|Q9Z736|SYS_CHLPN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|4377187|gb|AAD19008.1| Seryl tRNA Synthetase-2 [Chlamydophila pneumoniae CWL029]
 gi|7189912|gb|AAF38777.1| seryl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8979244|dbj|BAA99078.1| seryl tRNA synthetase-2 [Chlamydophila pneumoniae J138]
 gi|33236741|gb|AAP98828.1| seryl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 427

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 10/217 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   + ++Q   G      P L   ++   SG+   +  +  R
Sbjct: 159 GSGWPAYKNRGVLLEWALLTYMLQKQAAHGFQLWLPPLLVKKEILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
           + D  ++ +   PT E V+       I + + LP  +      FR E         G++R
Sbjct: 219 VED-GEQYLYLIPTAEVVLNGFRSQDILTEKELPLYYAACTPCFRREAGAAGAQERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   + ++F  TP     +Y KM      +   L L        +G +    S    
Sbjct: 278 VHQFHKVEMFAF-TTPNQDDIAYEKMLSIVEEMLTELKLPYRLSLLSTGDMSFTASKTID 336

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            E  +       +V       DF      T + D   
Sbjct: 337 AEVWLPGQKAFYEVSSISQCTDFQSRRSGTRYKDSQG 373


>gi|307690441|ref|ZP_07632887.1| histidyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 396

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 122/416 (29%), Gaps = 49/416 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ Q  KG    LP        +   +R+     GA E+  P  +  +L++       D 
Sbjct: 1   MLVQAPKGTKDMLPGIAYKWQYLEEKMRKTAAEYGAREIRTPAFEHTELFIRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         F          P   Y     FR E      
Sbjct: 61  VQKEMYTFEDKGGRSVTLKPEGTASAVRAFIEGSLFNDAQPTKMYYFTPVFRYE---NVQ 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R RE        F             +    LR+   LG+ ++ +   S        I
Sbjct: 118 KGRLREHHQFGVEVFGSQDASIDSE---LISLALRVLTELGVNNLELNINSIGCPNCRAI 174

Query: 203 GGDLSHEF------------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                 EF                +    ++   K+     I +   +  D +       
Sbjct: 175 YNAALKEFLKKNYDDLCPTCKSRFEKNPMRILDCKEEKCKIINASAPEILDYLDDECKSH 234

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-FGTKYSLPMSATF---KG 304
                             D   +      RG++     +F      +++     +     
Sbjct: 235 FEA-------LKAYLTAMDIKYKINPRIVRGLDYYTKTVFEILNNNFTVCGGGRYDNLIN 287

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G      +G +G+G  R++  + ES+           +       + I A     +  
Sbjct: 288 QVGGPSMPAVG-FGMGMERLILTLEESN---------IEIPRTPYIDLYIGAMGDSSKIE 337

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             K+   L K+G     D M + + +Q   A+ +     +I+G   ++  KV++K 
Sbjct: 338 SLKLAYNLRKLGLKCEIDHMNKSVKAQMKYANKIDASYTLILGDDELATKKVKLKR 393


>gi|296436275|gb|ADH18449.1| seryl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296438135|gb|ADH20296.1| seryl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140636|gb|ADH97394.1| seryl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 428

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G  ++   G      +   +  +Q   G      P L   D+   SG+   +  +  R
Sbjct: 159 GSGWPAYCNEGVLLEWALLTYLLNKQQAHGFQLWLPPLLVKRDILFGSGQIPKFDGQYYR 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D  D+++   PT E V+       I + ++LP  +      FR E         G++R
Sbjct: 219 VED-GDQSLFLIPTAEVVLNGFHSQEILNEQDLPLCYTAFTPCFRREAGAGGAHERGLVR 277

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   + ++F  TPE  +  Y KM      I   L L        +G +
Sbjct: 278 VHQFHKVEMFAF-TTPEQEEVVYQKMLHVVEEILSELQLPYQLSLLSTGDM 327


>gi|226356066|ref|YP_002785806.1| histidyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|259511942|sp|C1CV35|SYH_DEIDV RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226318056|gb|ACO46052.1| putative histidine--tRNA ligase (histidyl-tRNA synthetase)
           [Deinococcus deserti VCD115]
          Length = 448

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 121/421 (28%), Gaps = 48/421 (11%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVM 114
           R    R GA     P  + A+L      G  D   KEM  +    D    I  P     +
Sbjct: 37  RRVLERAGAQFTDTPLFEEAELVQRGVGGSTDIVRKEMFTVYYFGDHGGFILRPEGTAGL 96

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
              +  +       P   +     FR E        R R+F   D               
Sbjct: 97  VRSYLQNGLKQLPAPLKLWTHGPMFRAE---NVQKGRLRQFHQVDYEVLGSADALVDAE- 152

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------------------DLSHEFIVLA 214
                    +   LG++ + ++   G IG                      LS +     
Sbjct: 153 --AIALMTEVVRALGVQKVKVKL--GSIGDPEDREAYNTYLRELFTPHLEALSDDSKDRL 208

Query: 215 DTGETQVFCSKDFMD---FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +    ++  SK   D             D +        +    Y    DV  E     +
Sbjct: 209 NRNPMRILDSKSESDQTLIAQLGVRPMLDFLGEGARTHFEQVQAYLNAWDVSYEVDPSIV 268

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAV 328
                      E+ H    G K +L     + G     G    V    +  G  R++ A+
Sbjct: 269 RGLDYYRRTAWELHH-EGVGAKSALGGGGRYDGLAQELGSKEVVPGIGWAFGIERLLLAM 327

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                D +G+  P++  P    L+ + A D         +     +      +     + 
Sbjct: 328 -----DAEGVALPETSGP----LLYVAAMDDENVTYAATVALTTRRT-ARAEFAYRAMKP 377

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + F  A+  G     ++GS  V+   + IK+  TG +  +   ++  + + +   + P 
Sbjct: 378 AAAFRDAERRGARFIALIGSDEVAQDTLSIKNLQTGQQSKVQTRDLQAFLAGQADQHSPA 437

Query: 449 L 449
           +
Sbjct: 438 I 438


>gi|81428473|ref|YP_395473.1| histidyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123755849|sp|Q38XB7|SYH_LACSS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78610115|emb|CAI55164.1| Histidyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 434

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 138/426 (32%), Gaps = 38/426 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP        V    R+   R    E+  P  +S D++  S     D 
Sbjct: 1   MGYQKPKGTADILPGESDQWQLVEKTARDVFARYQFKEIRTPLFESYDVFSRSSGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F            P+  Y +   FR E RP+
Sbjct: 61  VSKEMYDFMDKGDRHIALRPEGTAGVVRAFVENKLYGPEHQKPYKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----RLGLKSIPMRAES--- 199
            G  R R+F      SF             M +  LR F     +L + ++   A     
Sbjct: 120 SG--RQRQFHQIGVESFGSESPAVDVEVISMAMRLLREFKITDLKLAINTLGDAASRAAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    P   +LS +  V       +V  SKD  D  I  +     D ++  + V  
Sbjct: 178 HEALVNYLEPHFEELSDDSKVRLHKNPLRVLDSKDAKDQEIVKDAPVILDYLTDEAKVHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFY-FGTKYSLPM-SATFKG---A 305
            T      S     ++   +          I E+       G  Y+  +    + G    
Sbjct: 238 NTVKTLLESLNIPYEVDTEMVRGLDYYNHTIFEIMTSNKVLGRGYTTVLAGGRYNGLVEQ 297

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G +G+G  R++  +   + D   ++    +  + + +              
Sbjct: 298 LGGPDMPGVG-FGLGVERLLLLMNAQNSD---LVAAPVLDAYVVGI------GAETSATT 347

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +   L + G     D +  +  +QF  A+ L     V +G   ++D    +K   +G+
Sbjct: 348 LHLVESLREAGLTADRDYLDRKPKAQFKTANKLNAQFVVTIGESELADKTAHVKDMTSGV 407

Query: 426 REDMSL 431
              + L
Sbjct: 408 EITVPL 413


>gi|267058|sp|P30053|SYH_STREQ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 426

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 137/430 (31%), Gaps = 49/430 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    L +       V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILSVAAAKWQYVEGVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F RLG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGSANPATDVETIAM--AYH-LFERLGIKGVTLHLNSLGNAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D    +      D     S 
Sbjct: 175 AAYRQALIDYLSPMRDTLSKDSQRRLDENPLRVLDSKEKEDKIAVANAPSILDYQDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA- 305
                            +             RG++     IF F T+          G  
Sbjct: 235 AHFDAVRSML-------EALAIPYVIDTNMVRGLDYYNHTIFEFITEVDQSELTICAGGR 287

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG   Y    +       +    +    D +G+  P       + +  + A   V   A
Sbjct: 288 YDGLVEYFGGPATPGFGFGLGLERLLLILDKQGVELPVEEG-LDVYIAVLGADANV---A 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   + + G  V  D +G +I +QF  AD     + + +G   +   +  +KH  T 
Sbjct: 344 ALALTQAIRRQGFTVERDYLGRKIKAQFKSADTFKAKVVITLGESEIKAGQAVLKHNQTR 403

Query: 425 IREDMSLEEV 434
               +S +++
Sbjct: 404 QEMTVSFDQI 413


>gi|329956027|ref|ZP_08296798.1| glycine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328524786|gb|EGF51840.1| glycine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 513

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 71/484 (14%), Positives = 150/484 (30%), Gaps = 91/484 (18%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +  +G +  +N+     +         + +         +W  SG  D++      L
Sbjct: 33  VYDYGQMGVELKNNIKQYWWQSMVLLHENIVGIDSAIFMHPTIWKASGHVDAFND---PL 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-----LKFR----------- 140
            D  D    Y      +   + +   K  + +     +        +FR           
Sbjct: 90  IDNRDSKKRYRADV-LIEDQLAKYDDKINKEVAKAAKRFGEAFDEAQFRSTNTRVLEHQA 148

Query: 141 ------------------DELR-------------PRFGVMRSREFLMKDAYSFDLTPEG 169
                             DELR                     R+F +        T EG
Sbjct: 149 KRDALHERFAKALNDNNLDELRQIILDEEIVCPISGTKNWTEVRQFNLMFTTEMGSTSEG 208

Query: 170 SKHSYNK------MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   Y +      +FV+YL +    R+ +     +     IG    +E +        + 
Sbjct: 209 AMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQ-----IGKAFRNEIVARQFIFRMRE 263

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL---------- 271
           F   +   F  P    D+        +       +      +++    +           
Sbjct: 264 FEQMEMQFFVKPGTELDWFKTWKATRLKWHKALGFGDDHYRYHDHDKLAHYANAATDIEF 323

Query: 272 -PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     GI     F      K+S      F     + +   +    IG  R+  ++
Sbjct: 324 LMPFGFKEVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPYVIETSIGVDRMFLSI 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           + +S+  + +           P ++AP K++++ +   D    +   +I   L K     
Sbjct: 384 MSASYCEEQLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNL-KFHFHC 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  +
Sbjct: 442 QYDE-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIA 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|321310208|ref|YP_004192537.1| glycyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319802052|emb|CBY92698.1| glycyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 428

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 63/448 (14%), Positives = 138/448 (30%), Gaps = 105/448 (23%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G Y +  LG      +  +           +  +      S D+W  SG  +++   ++
Sbjct: 27  SGYYDYGHLGVLLKKKIQRLWERYFVDRKPNSYYLDATIFTSGDVWKASGHMENFNDILV 86

Query: 95  RLAD-------------------------------------RNDKAMIYGPTHEEVMTDI 117
              D                                     R  +     P   + +   
Sbjct: 87  DCKDCKKRYREDHLPDSGGIKKCPNCGASNWTEAKPFNLIFRAQEDHYLRPETAQSIFIN 146

Query: 118 FRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+  ++S    +PF   Q+   FR+E+     + R++EF   +   F    +        
Sbjct: 147 FKGFLRSTNAKIPFCICQVGKAFRNEVTISNFIFRTKEFEQMECEWFIHPNDAMDVFTQC 206

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                + + + LG+K   ++    P                E +   S    D       
Sbjct: 207 QKEMEIFLVNILGIKREMIKVVEIP---------------KEDRAHYSSRSSD------- 244

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +F+       +               N    D                       +Y  
Sbjct: 245 VEFEFPHGWGELWGLAYRSDFDLLSHQNASGKDH----------------------QYLD 282

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD----GKG-----IIWPDSVAPF 347
           P +        + +   +  + IG  R++ AV+ S+++      G     +     +AP+
Sbjct: 283 PFT-------NEKYVPHVVEHSIGLNRLLYAVVSSAYEVEQLENGESRELLRISKDLAPY 335

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
             S++ +  ++   +D  + ++  L + G      D G  IG ++   DL+G P  + + 
Sbjct: 336 LFSILPLTKNE---KDLAQDLFLELIENGISSSLLDKG-SIGKRYRKNDLIGTPYCITLD 391

Query: 408 SKFVSDS-KVEIKHRLTGIREDMSLEEV 434
            +   D+    ++ R + +++ +SLEE 
Sbjct: 392 QETSRDNFSFTVRDRDSMLQKRISLEEF 419


>gi|302801640|ref|XP_002982576.1| hypothetical protein SELMODRAFT_268613 [Selaginella moellendorffii]
 gi|300149675|gb|EFJ16329.1| hypothetical protein SELMODRAFT_268613 [Selaginella moellendorffii]
          Length = 676

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 14/158 (8%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG----------KGIIWPDSVAPFK 348
             T K  D +     +     G  R++  + E   D               +P  VAP K
Sbjct: 498 QVTKKTKDKESFTPSVIEPSFGIGRIIYCLFEHCFDTREGADSVEQLNFFRFPPVVAPVK 557

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            S+ ++   +    +  + I   L + G  V  D  G  IG ++A  D +G P  + V  
Sbjct: 558 CSVFSL-VQNAGLDELAQSISVELRRAGLAVKTDITGRSIGKRYARTDEIGIPFAITV-- 614

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              S+  V ++ R +  +  + +E+V    +   + N+
Sbjct: 615 -DSSEGGVTVRDRDSKEQIRVPVEQVTQLLADLSAGNK 651



 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           LPF   Q+   FR+E+ PR G++R REF + +   F
Sbjct: 256 LPFGAAQVGQAFRNEISPRQGLLRVREFTLAEIEFF 291



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGR 85
           +++  I+    G++ + P G    DNV +   +        +++  P L    +   SG 
Sbjct: 71  VKSFKIYGGVAGLFDYGPPGSAVKDNVLSFWHQHFVVYDDLLKVDCPCLTPEAVLKASGH 130

Query: 86  YDSYGKEM 93
            D +   M
Sbjct: 131 VDRFTDLM 138


>gi|260424728|ref|ZP_05733081.2| serine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402970|gb|EEW96517.1| serine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 440

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 78/247 (31%), Gaps = 19/247 (7%)

Query: 20  IASHKLMLRTGMIHQHSKG------IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVP 72
              ++L    G++     G       Y +L +  +    V   + +    +    E+  P
Sbjct: 143 KEHYELGENLGILDSERAGKVSGARFYFYLSMAARLERAVYNFMLDVHTQQNDFTEVIPP 202

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +      +G+   +  +M ++   N   M   PT E  +T+ F   I     LP   
Sbjct: 203 YIINGASMQGTGQLPKFEDDMYKVEGEN---MYMTPTAEVPLTNYFSGEILDGAVLPVHL 259

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +   FR E     +   G++R  +F   +   +   PE S      +     +I   L
Sbjct: 260 TALTPCFRKEAGSAGKDTRGLIRQHQFHKVEMVKY-CKPEDSWDELESLTAEAEKILQLL 318

Query: 189 GLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            L    +   +G IG   +     E  +       ++    + +DF     N  F     
Sbjct: 319 KLPYHVVCLCTGDIGFSSAKTYDIEVWMPGQQKYREISSCSNCLDFQARRANIRFRRHQG 378

Query: 245 LNSIVEQ 251
                  
Sbjct: 379 DKPEFVH 385


>gi|313206450|ref|YP_004045627.1| seryl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312445766|gb|ADQ82121.1| seryl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|315023609|gb|EFT36613.1| seryl-tRNA synthetase [Riemerella anatipestifer RA-YM]
 gi|325336105|gb|ADZ12379.1| Seryl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 422

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 10/189 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +     G   +L  G +    +     ++    G +E++ P + +      +G+      
Sbjct: 159 VKIAGAGFPVYLGKGARLQRALVQFFLDKNTDAGYLEVNPPHVVNEASGYGTGQLPDKEG 218

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RF 147
           +M  +   N+  +   PT E  +T+I+R  I   + LP         +R E         
Sbjct: 219 QMYFV---NEDNLYLIPTAEVPVTNIYRDVILEEKKLPVKNTAFSQCYRREAGSYGADVR 275

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GD 205
           G+ R  +F   +       PE S  + ++M      I   L L    +R   G +G    
Sbjct: 276 GLNRLHQFEKVEIVRL-EKPENSYTALDEMVAHVKSILEDLELPFRILRLCGGDMGFTSA 334

Query: 206 LSHEFIVLA 214
           L+++F V +
Sbjct: 335 LTYDFEVWS 343


>gi|332993163|gb|AEF03218.1| seryl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 430

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 12/202 (5%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYG 107
             +   + +      G  EM VP L +AD    +G+   +G+++   + A    + +   
Sbjct: 175 RAIAQFMLDVHTTEHGYDEMYVPFLVNADSLYGTGQLPKFGEDLFHTQPATEEGQGLSLI 234

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T+I R  I   ++LP         FR E     R   G++R  +F   +    
Sbjct: 235 PTAEVPLTNIARDEILDEKSLPIKMTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL 294

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGET 219
            + PE S  +  ++      I  +L L    +   +G +G         E  + A     
Sbjct: 295 -VKPEDSFDALEELTQHAETILQKLELPYRKVLLCTGDMGFGACKTYDLEVWLPAQNTYR 353

Query: 220 QVFCSKDFMDFPIPSENTDFDD 241
           ++    + +DF        F +
Sbjct: 354 EISSCSNMVDFQARRMQARFRN 375


>gi|194246533|ref|YP_002004172.1| Seryl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|254783041|sp|B3R0F5|SYS_PHYMT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|193806890|emb|CAP18319.1| Seryl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 423

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 7/179 (3%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG +   ++   + +  +  G IE+  P + +      +G+   +  +  RL +
Sbjct: 163 FIVYKGLGARLERSLIQFMMDLHSEKGYIEIIPPFIVNDISMFSTGQLPKFKNDSYRLEN 222

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N+      PT E    ++ R+ + S +NLP  +      FR E     +   G++R  +
Sbjct: 223 SNN--WYLNPTGEVPAINLHRNEVLSQKNLPLNYVVFTTCFRQEAGTAGKDTRGILRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           F   +   F   P+ S      M      +  +L L    +   S  +G   S  + + 
Sbjct: 281 FNKVELIKF-TEPQDSYLELENMLQDAESVLQKLELPYRVIMLPSHELGFSASKTYDIE 338


>gi|17547056|ref|NP_520458.1| seryl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|30173189|sp|Q8XWY3|SYS_RALSO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|17429357|emb|CAD16044.1| probable seryl-trna synthetase protein [Ralstonia solanacearum
           GMI1000]
          Length = 438

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 21/224 (9%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------- 96
            +    +   + +      G  E  VP + +A     +G+   + +++ R+         
Sbjct: 169 ARLHRALAQFMLDTHTQEHGYTEAYVPYIVNAASMRGTGQLPKFEEDLFRVPRKMGQATE 228

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
             A  + +     PT E  +T++ R  I +   LP  F      FR E     +   G++
Sbjct: 229 AEAGEHVENFYLIPTAEVPLTNLVRDEIVAGDALPMKFAAHSPCFRSEAGSYGKDTRGMI 288

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +     + PE S  + + M      I  +L L    +   +G +G   +   
Sbjct: 289 RQHQFDKVEMVQI-VQPETSFEALDAMTHHAENILRKLELPFRTVVLCTGDMGFGSTKTY 347

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        F +      ++ 
Sbjct: 348 DIEVWIPAQNTYREISSCSNMGDFQARRMQARFRNAQGKPELLH 391


>gi|114562974|ref|YP_750487.1| seryl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122299903|sp|Q083B6|SYS_SHEFN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|114334267|gb|ABI71649.1| seryl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 428

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 19/232 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIE 68
           D E+  H  +     G+  +++    G    +  GQ A     +   + +      G  E
Sbjct: 133 DFEVKDHIDLGEALEGLDFKNAVKISGSRFIIMRGQIARLNRALGQFMLDLHTTEHGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             VP L + +  + +G+   +G+++          + +   PT E  +T+  R  I    
Sbjct: 193 TYVPLLVNEESLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNYVRDMIVDET 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP     +   FR E     R   GV+R  +F   +       P+ S  +   +     
Sbjct: 253 ELPMKMTALTPCFRSEAGSYGRDTRGVIRLHQFDKVELVQI-AHPDHSMQALEDITSHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           ++   L L    M   +G +G   S     E  + A     ++    +  DF
Sbjct: 312 KVLQLLNLPYRTMVLCTGDMGFGSSKTFDIEVWLPAQNTYREISSCSNMKDF 363


>gi|317478512|ref|ZP_07937671.1| glycyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|316905326|gb|EFV27121.1| glycyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 513

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 70/484 (14%), Positives = 151/484 (31%), Gaps = 91/484 (18%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +  +G +  +N+     +         + +         +W  SG  D++      L
Sbjct: 33  VYDYGQMGVELKNNIKQYWWQSMVLLHENIVGIDSAIFMHPTIWKASGHVDAFND---PL 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-----LKFR----------- 140
            D  D    Y      +   + +   K  + +     +        +FR           
Sbjct: 90  IDNRDSKKRYRADV-LIEDQLAKYDDKINKEVAKAAKRFGEAFDEAQFRSTNGRVLEHQA 148

Query: 141 ------------------DELR-------------PRFGVMRSREFLMKDAYSFDLTPEG 169
                             DELR                     R+F +  +     T +G
Sbjct: 149 KRDALHERLAKALNDNNLDELRQIILDEEIVCPISGTKNWTEVRQFNLMFSTEMGSTADG 208

Query: 170 SKHSYNK------MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   Y +      +FV+YL +    R+ +     +     IG    +E +        + 
Sbjct: 209 AMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQ-----IGKAFRNEIVARQFIFRMRE 263

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL---------- 271
           F   +   F  P    D+        +       +      +++    +           
Sbjct: 264 FEQMEMQFFVKPGTELDWFKTWKATRLKWHKALGFGDDHYRYHDHDKLAHYANAATDIEF 323

Query: 272 -PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     GI     F      K+S      F     + +   +    IG  R+  ++
Sbjct: 324 LMPFGFKEVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPYVIETSIGVDRMFLSI 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           + +S+  + +           P ++AP K++++ +   D    +   +I   L K     
Sbjct: 384 MSASYCEEKLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNL-KFHFHC 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  +
Sbjct: 442 QYDE-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIA 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|307329105|ref|ZP_07608272.1| glycyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306885300|gb|EFN16319.1| glycyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 460

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/450 (14%), Positives = 144/450 (32%), Gaps = 72/450 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++W  SG   ++      L 
Sbjct: 33  WDYGPLGVELKENIKRQWWRSMVTSRDDVVGLDSSVILAREVWEASGHVATFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT-FYQIQLKFRD------ELRPRFGVM 150
           +       +   H E   +        +  LP      +            E +   G++
Sbjct: 90  ECTSCHKRFRADHLEEAYE------AKHGRLPENGLADVNCPHCGNKGSFTEPKQFSGLL 143

Query: 151 RSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LGLKSIPMRAESGPIGGDL 206
            +             L PE ++  +   F++  +   R    G+  +         G   
Sbjct: 144 ATHLGPTQDSGSIAYLRPETAQGIFTN-FLAVQQTSRRKPPFGIAQV---------GKSF 193

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E         T+ F   +   F  P E+  + +                  +    E 
Sbjct: 194 RNEITPGNFIFRTREFEQMEMEFFVKPGEDETWHEYWMEQRWNWYRDLGLQEANIRWYEH 253

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD------- 306
             +   +    S R  ++ + F FG             T + L   +   G D       
Sbjct: 254 PKE---KLSHYSKRTADIEYRFSFGGSEWGELEGLANRTDFDLKAHSAASGQDLSYFDQE 310

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLI 352
            G+     +     G  R + A +  ++                 +     +AP K++++
Sbjct: 311 AGERWTPYVIEPAAGVGRAMLAFMLDAYVEDEAPNAKGKMEKRTVMRLDPRLAPVKVAVL 370

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +  + Q      + + A L K   ++ +DD G  IG ++   D +G P  V V    + 
Sbjct: 371 PLSRNPQ-LSPKAKGLAADLRKHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLD 427

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D+ V ++ R T  +E +SL+++ +Y   R 
Sbjct: 428 DNAVTVRERDTMKQERVSLDQIQSYLGGRL 457


>gi|299066066|emb|CBJ37247.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Ralstonia solanacearum CMR15]
          Length = 438

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 21/224 (9%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------- 96
            +    +   + +      G  E  VP + +A     +G+   + +++ R+         
Sbjct: 169 ARLHRALAQFMLDTHTQEHGYTEAYVPYIVNAASMRGTGQLPKFEEDLFRVPRKMGQATE 228

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
             A  + +     PT E  +T++ R  I +   LP  F      FR E     +   G++
Sbjct: 229 AEAGEHVENFYLIPTAEVPLTNLVRDEIVAGDALPMKFAAHSPCFRSEAGSYGKDTRGMI 288

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +     + PE S  + + M      I  +L L    +   +G +G   +   
Sbjct: 289 RQHQFDKVEMVQI-VQPETSFEALDAMTHHAENILRKLELPFRTVVLCTGDMGFGSTKTY 347

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        F +      ++ 
Sbjct: 348 DIEVWIPAQNTYREISSCSNMGDFQARRMQARFRNAQGKPELLH 391


>gi|197334999|ref|YP_002155670.1| seryl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|238690279|sp|B5FCK7|SYS_VIBFM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|197316489|gb|ACH65936.1| seryl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 435

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +      G  E
Sbjct: 135 DFEVKDHVDLGEMADGLDFASAVKISGSRFIVMKGQFARLHRALSQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L + D    +G+   +G+++        +++D   K +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNPDSLFGTGQLPKFGEDLFHTSPLTEQVSDVPLKKLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    ++P         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITDEADMPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TRPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGSRKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|193211698|ref|YP_001997651.1| glycyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085175|gb|ACF10451.1| glycyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 489

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 68/473 (14%), Positives = 142/473 (30%), Gaps = 65/473 (13%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I   S         + + PLG +   N+  +      R     + +    + +
Sbjct: 26  LAKRRGFIFPSSEIYGGLSSCFDYGPLGSEMKKNIKDLWWNAMTRRHQNIVGLDASIMMN 85

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH--EEVMTDIFRSHIKSYRNLPFTFYQ 134
             +W  SG   S+      L D       Y   H  E  +  + R   ++        Y+
Sbjct: 86  PTVWEASGHVASFND---PLIDDKTTKRRYRADHLIENHIEKLHREGKEAEAAAVKVAYE 142

Query: 135 IQLKFRDELRPRFGVM----------------RSREFLMK----------DAYSFDLTPE 168
                 D  R  + ++                  R+F +                 L PE
Sbjct: 143 AAEGTEDPNRTLYNIIIESGIKAPDTGSADWTEVRQFNLMFQCNMGAIAGSGGVVYLRPE 202

Query: 169 GSKHSYNKMFVS--YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            ++  +          R+    G+  I     +  + G+     +V  +  E Q F    
Sbjct: 203 TAQGIFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFIFR-MVEFEQMEMQYFVKPG 261

Query: 227 FMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                  +   + F        + ++    Y      H   L   +          IE  
Sbjct: 262 TQLEAFEAWREERFRWYSETLGMTKEKLHWYKHDKLAHYADLAYDIKFEFPFGTEEIEGI 321

Query: 286 HIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGK- 336
           H     T + L     + G           + +   +     G  R   A++  ++    
Sbjct: 322 HSR---TDFDLTQHQEYSGKSMEYIDQTTNERYIPYVVETSSGCDRTFLALLSDAYQEDV 378

Query: 337 -------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                   +     VAP K +++ +    ++  +   ++ A LS+    V +DD    IG
Sbjct: 379 VDGEPRVMLKLAPKVAPVKAAVLPLMKKGEMA-EKARQLCAALSES-FMVQYDD-AASIG 435

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ++   D +G P    V    + +  + +++R T  +E + + +   + + + 
Sbjct: 436 KRYRRQDEIGTPFCFTVDHDTLENGTITVRYRDTAAQERIEMSKAAEFLASKL 488


>gi|28897882|ref|NP_797487.1| seryl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364482|ref|ZP_05777107.1| serine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260877041|ref|ZP_05889396.1| serine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260902447|ref|ZP_05910842.1| serine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|31340446|sp|Q87QP1|SYS_VIBPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|28806095|dbj|BAC59371.1| seryl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308093830|gb|EFO43525.1| serine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308110643|gb|EFO48183.1| serine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|308114618|gb|EFO52158.1| serine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 435

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G  EM VP L ++D    +G+   +GK++
Sbjct: 160 TGARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTEMYVPYLVNSDSLFGTGQLPKFGKDL 219

Query: 94  L-------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
                   ++ D   + +   PT E  +T++ R  I    +LP         FR E    
Sbjct: 220 FHTEPLAEKVNDEEPRKLSLIPTAEVPVTNLVRDTITDEADLPIKMTAHTPCFRSEAGSY 279

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +       PE S  +  ++     ++   L L    +   +G +
Sbjct: 280 GRDTRGLIRMHQFDKVELVQI-TKPEDSMTALEELTGHAEKVLQLLELPYRKVVLCTGDM 338

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G         E  V A     ++    +  DF        F
Sbjct: 339 GFGARKTYDLEVWVPAQETYREISSCSNMWDFQARRMQARF 379


>gi|229145901|ref|ZP_04274280.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST24]
 gi|296503833|ref|YP_003665533.1| histidyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|228637509|gb|EEK93960.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST24]
 gi|296324885|gb|ADH07813.1| histidyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 426

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 145/443 (32%), Gaps = 65/443 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LQDQGKRDLALRYDLTIPFAKVVAMNPNLR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ES  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMSMAF-ELFQTLNLEVTIQYNNRKLLNGILESINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPL 238

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 239 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 299 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADLFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              Q C    +++ +  S     V  +  G ++      A+    P  +I+G   +S + 
Sbjct: 348 TELQ-CLPIAQQLRSTTS---LKVELELAGRKLKRALNYANKENIPYVLIIGENELSTNT 403

Query: 416 VEIKHRLTGIREDMSLEEVINYA 438
           V +++   G    + +  + NY 
Sbjct: 404 VVLRNMKEGSEVKVPISSLSNYL 426


>gi|189467869|ref|ZP_03016654.1| hypothetical protein BACINT_04261 [Bacteroides intestinalis DSM
           17393]
 gi|189436133|gb|EDV05118.1| hypothetical protein BACINT_04261 [Bacteroides intestinalis DSM
           17393]
          Length = 424

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 118/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELTKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 AGYLEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 EEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHKEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++ +    T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRSGEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|154149298|ref|YP_001405817.1| seryl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|166201246|sp|A7HZX6|SYS_CAMHC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|153805307|gb|ABS52314.1| seryl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 417

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 10/212 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G K    +   + +     G   +++P L   ++   +G+   +  ++ ++ D ++ ++
Sbjct: 169 MGAKLNLAIINYMIDFNQSRGFELVNLPFLVKDEILFGTGQLPKFKDDLYKV-DNDELSL 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E   T+ +   I S   LP  F      FR E     +   G++R  +F   + 
Sbjct: 228 YLIPTSEVTATNFYNGEILSEDELPVKFTSYSHCFRKEAGSAGKDTRGMIRQHQFEKVEL 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            S    PE S   +++M      +   LGL    M   SG +G   +     E  +    
Sbjct: 288 VSI-TKPEDSDKMFDEMVSCASDLLKSLGLAHRQMMLCSGDLGFSAAKTIDLEVWLPGQN 346

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
              ++    +  DF        + D    N +
Sbjct: 347 TYREISSISNCRDFQARRAKIRYKDKNGKNRL 378


>gi|157375268|ref|YP_001473868.1| seryl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|189083588|sp|A8FV67|SYS_SHESH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157317642|gb|ABV36740.1| Serine--tRNA ligase [Shewanella sediminis HAW-EB3]
          Length = 428

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 19/230 (8%)

Query: 19  EIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMS 70
           E+  H  +  T  G+  + +    G    +  GQ A     +   + +      G  E  
Sbjct: 135 EVKDHVELGETLGGLDFKAAVKITGTRFIIMKGQIARMNRALAQFMLDLHTTEHGYTEAY 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           VP L + +  + +G+   +G+++          + +   PT E  +T+I R  I    +L
Sbjct: 195 VPLLVNEESLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNIARDTIIDEADL 254

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   G++R  +F   +     + PE S  + + +      +
Sbjct: 255 PVKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL-VKPEDSMAALDSLTGHAETV 313

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             +L L    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 314 LQKLELPYRTVVLCTGDMGFGSSKTFDIEVWLPAQNTYREISSCSNMQDF 363


>gi|283769649|ref|ZP_06342545.1| histidine--tRNA ligase [Bulleidia extructa W1219]
 gi|283103917|gb|EFC05303.1| histidine--tRNA ligase [Bulleidia extructa W1219]
          Length = 423

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 129/433 (29%), Gaps = 39/433 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSY 89
           M +Q  +G Y  LP   K    V  +IR+   +    E+  P  +   ++       D  
Sbjct: 1   MSYQTPRGTYDILPQEMKRWHYVEKVIRQITKKYRYQEIRTPYFEETKVFKRENDSSDMV 60

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFG 148
            KEM    D    +    P     +   F  H       LP   Y +   FR E RP+ G
Sbjct: 61  NKEMYTF-DMGKDSYTLRPEGTAGVIRSFDQHKLYGSMELPVRLYYLGAMFRHE-RPQKG 118

Query: 149 VMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R R+F      +    +PE    +    +        ++G+ SI +   +  +G D S
Sbjct: 119 --RQRQFTQFGIENIGAKSPELDAETIALGYDLV----KQMGISSIKVLINT--LGDDES 170

Query: 208 HEFIVLA-----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE--------QWTA 254
                 A          ++           P    D       + + +           +
Sbjct: 171 RANYRQALKEHFQPHLEELCSDCRRRYEQNPLRILDCKIDHDQDCLHKAPRLVDSLNEAS 230

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF---GTKYSLPMSATFKGADGKDHY 311
               +  +          E      RG++      F    T+      AT   A G+  +
Sbjct: 231 REYFSRVLAALDALGIPYEVDDHLVRGLDYYTHTVFEVVSTRPDSGAQATIF-AGGRYDH 289

Query: 312 VQMGSYGIGAMRVVAAVIES----SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 G     +  A+           +G  +   +      +I +            K
Sbjct: 290 FVEYYGGPDMSGIGFAIGMERLISLASDEGFDFGKDIT-CDAYVIGLGDVSLEVL----K 344

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L   G  V  + +   + SQF  AD       +I+G   V + +V +K      + 
Sbjct: 345 MAQELRTNGFIVEANLLPRSLKSQFKSADRHEAKYVIILGEDEVKNGRVNVKRTSDKTQV 404

Query: 428 DMSLEEVINYASH 440
            +  +E+I     
Sbjct: 405 TIVRQELIKQLES 417


>gi|325981898|ref|YP_004294300.1| histidyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325531417|gb|ADZ26138.1| histidyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 424

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 126/428 (29%), Gaps = 40/428 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP      +    ++R      G   +  P ++  DL++ S G   D   KEM  
Sbjct: 10  GMNDILPEESYLWEYFEQMVRLWLTAYGYRNIRTPIVEQTDLFIRSIGEVTDIVEKEMYT 69

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N+ ++   P            H   Y   P   Y     FR E RP+ G  R R+
Sbjct: 70  FIDHLNNDSLTLRPEGTASCVRAAIEHNLLYA-GPQRLYYAGPMFRHE-RPQRG--RYRQ 125

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F      +              M V   R++  LG+  + +   +        +      
Sbjct: 126 FHQVGVEALGYAGPDIDAELIVMCV---RLWELLGISDLRLEISTLGNTESRALHRSRLL 182

Query: 209 EFIVLADTGETQ------------VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           ++         +            +  SK+     I        D +   S     +   
Sbjct: 183 KYFERHRDNLDEDSLRRLYVNPLRILDSKNPEMQQIIENAPKLIDDLDPESCGHFESLQR 242

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQM 314
                  N  +   L        R +        G + ++     + G            
Sbjct: 243 ILRERGINYNINLRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVEQVGGKPTPA 302

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             + +G  R+++ + E     +  + PD    ++         D+   D   K    L  
Sbjct: 303 CGFAMGVERLLSLMQEYGKKIQQPV-PDVYIAYQ--------GDEQVMDYAWKCAEFLRD 353

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEE 433
            G DV     G    SQ   AD  G    +I+G+      +V IK  R    +  + L E
Sbjct: 354 EGFDVILHCGGGSFKSQMKKADSSGAVYALIIGNDEFRAQQVTIKPLRDLIEQVSLKLSE 413

Query: 434 VINYASHR 441
           V    + +
Sbjct: 414 VAEIINKK 421


>gi|113474598|ref|YP_720659.1| histidyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|110165646|gb|ABG50186.1| histidyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 467

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 84/487 (17%), Positives = 163/487 (33%), Gaps = 92/487 (18%)

Query: 26  MLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           M +   I+     G   +LP  ++    +   IR+   R G   +  P ++  ++    G
Sbjct: 1   MAKADKINYSCPSGFPEFLPGEKRLESYLMDTIRQVFERYGFTPIETPAVERLEVLQAKG 60

Query: 85  RYDSYGKEM-------LRLADRNDKAMIYGPTHEE--------VMTDIFRSHIKSYRNLP 129
              + G  +       L    + +K        EE        V    + +   +  N P
Sbjct: 61  ---NQGDNIVYGLSPILPPNRQAEKDQAGDSGSEERGLKFDQTVPLAAYIARHLNALNFP 117

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-RIFHRL 188
           F  YQ+ + FR E R + G  R R+F   D              Y+    + +  IF  +
Sbjct: 118 FARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVVGRGKLSLL--YDAQIPAIIAEIFEAI 172

Query: 189 GLKSIPMRAESGPIGG-----------------------DLSHEFIV---LADTGETQVF 222
            +    +R  +  +                         +   E  V   L + G ++  
Sbjct: 173 KIGDFLIRINNRKVLTGFFASVGVLVENIVSCIRIVDTVEKVGEVKVKKALKEIGLSEDQ 232

Query: 223 CSKDFMDFPIPSENTDFDD--------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             K +    I     D  D        + +   + +         S V N  + D     
Sbjct: 233 VEKVWDFTNIKGTVDDVLDKLKSMTKTVENSEVLSQGIYELETVISGVRNLGVSDQRFCI 292

Query: 275 KRVSARGIE-----------VGH----IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
               ARG++           +GH        G +Y   +  TF    G+       S G+
Sbjct: 293 DLSIARGLDYYTGTVYETTLIGHEALGSICSGGRY-EELVGTFI---GEKMPGVGISIGL 348

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R+++ ++       GI+  +S AP   +++ +   + +     + +  +L + G +V
Sbjct: 349 --TRLMSRLL-----KAGIL--ESFAPTPATVMVVNMQESLMATYLD-VSQKLRRSGMNV 398

Query: 380 F--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              +D  G  +G Q   AD    P  +I+GS+  + +   +K   TG +  + +  + + 
Sbjct: 399 ITSFDGRG--VGKQLQQADKQKIPFCIIIGSEEAAANMCSLKDLRTGEQMKVPIGSLADV 456

Query: 438 ASHRFSN 444
              R SN
Sbjct: 457 LKQRLSN 463


>gi|313201004|ref|YP_004039662.1| seryl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312440320|gb|ADQ84426.1| seryl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 429

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 16/200 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  GQ A     +   + + Q  R G  E   P + +AD    +G+   +  ++
Sbjct: 157 AGARFTLMRGQIARLHRALAQFMLDTQTERHGYTECYTPYIVNADSLRGTGQLPKFEADL 216

Query: 94  LRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                   +   +A+   PT E  +T+  R  I +  +LP         FR E     R 
Sbjct: 217 FAAQKGGQEGEGEALYLIPTSEVTLTNTVRDEILAAESLPVKLTAHTPCFRSEAGSYGRD 276

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +     + PE S  +  +M      I   LGL    +   +G +G  
Sbjct: 277 TRGMIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAEYILQALGLPYRVVSLCTGDMGFG 335

Query: 206 LSH----EFIVLADTGETQV 221
            +     E  + A     ++
Sbjct: 336 AAKTYDLEVWLPAQNTYREI 355


>gi|262381190|ref|ZP_06074328.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|262296367|gb|EEY84297.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_33B]
          Length = 424

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 104/317 (32%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSKQSHQEMLNHVEGLLQKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF +                   ++       +V +   FD+ 
Sbjct: 332 ----------FTAALCFDFEV-------------------YSEAQQRWLEVSSVSNFDTY 362

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
             N+                           +  + K      +    +   R+VAA++E
Sbjct: 363 QANRLKCRY----------------------RDENKKTQLCHTLNGSALALPRIVAALLE 400

Query: 331 SSHDGKGIIWPDSVAPF 347
           ++   +GI  P ++ P+
Sbjct: 401 NNQTPEGIRIPKALIPY 417


>gi|241204418|ref|YP_002975514.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858308|gb|ACS55975.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 427

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 14/210 (6%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +   +    + +   +  ++ R  D         PT
Sbjct: 176 RALGQFMIDLHTSEHGYSEVSSPLMVRDEAVYGTAQLPKFADDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVREEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E +   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 291 DAESAVAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREI 350

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  DF     N  +      N+    
Sbjct: 351 SSCSVCGDFQGRRMNARYRGKEDKNNKFVH 380


>gi|256375836|ref|YP_003099496.1| histidyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255920139|gb|ACU35650.1| histidyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 421

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 128/445 (28%), Gaps = 69/445 (15%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG+  + P    A   V + +     R G   + +P  +   L+        D   KE
Sbjct: 7   APKGVPDYFPPNSAAFTAVRSALLGATARAGYGYIELPVFEDTALFARGVGESTDVVSKE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR  +++   P     +      H      LP         FR E  P+ G  R 
Sbjct: 67  MYTFTDRGGRSITLRPEGTAGVMRAVIEHGLDRGQLPVKLAYAAQFFRAEQ-PQAG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDL 206
           R+F      +  +           +       F  LGL    +   S       P   + 
Sbjct: 124 RQFHQVGVEAIGVDDPALDAEVIAIAD---EGFRALGLTGYRLELTSLGDATCRPQYREK 180

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              F+      E     ++      +  +  +  ++++   ++    +P         + 
Sbjct: 181 LQAFLAKLPLDEDTRRRAEINPLRVLDDKRPEVRELVAEAPLMLDNLSPETLEHYERVKA 240

Query: 267 LFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQ 313
               L      + R             E  H    G +  +     + G  A      + 
Sbjct: 241 HLGDLGVKYVENPRMVRGLDYYTKTTFEFVHDG-LGAQSGIGGGGRYDGLMAQLGGQELS 299

Query: 314 MGSYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              +G+G  R + A  +E    G        V    +  + +       R     I A L
Sbjct: 300 GVGFGLGVDRALLACQVEGLAVGD-------VTRCDVYGVPLG---DAARSRLVGIGAPL 349

Query: 373 SKVGCDVFWD---------------DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
              G    +D               D     G++FA          +++G + +    V+
Sbjct: 350 RAAGVR--YDMAYGGKGLKGAMKGADRS---GARFA----------LVLGERDIEAGVVQ 394

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +K   TG + ++ L++V+       
Sbjct: 395 LKELATGEQREVPLDDVVTEVRGAL 419


>gi|326202063|ref|ZP_08191933.1| LOW QUALITY PROTEIN: glycyl-tRNA synthetase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987858|gb|EGD48684.1| LOW QUALITY PROTEIN: glycyl-tRNA synthetase [Clostridium
           papyrosolvens DSM 2782]
          Length = 462

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 116/367 (31%), Gaps = 75/367 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++    + + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSKAEIFLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF                                                    
Sbjct: 214 FTFRTREFEQM------------------------------------------------- 224

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E     + G   +   K + DF      +      +L     +       ++   + + 
Sbjct: 225 -ELEFFCEPG-KDLEWFKYWKDFCYNWLLSLNMTKENLKLRDHEKEELSHYSNATTDIEF 282

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGAD-GKDHYVQMGSYGIGAMRVV 325
                  +     GI     F      +      ++      + +        +GA RV 
Sbjct: 283 LFPFGWGELW---GIADRTDFDLKQHMTHAKDDLSYFDPTTNEKYVPYCIEPSLGADRVT 339

Query: 326 AAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            A +  +++ +          + +  ++AP KI+++ +        +  EK+Y  L+K  
Sbjct: 340 LAFLCDAYNEEEVSEGDVRTVLRFHPAIAPVKIAVLPLSKK---LGEEAEKVYHMLTKT- 395

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +D+ G  IG ++   D +G P  +      + D  V I+ R T  +  + ++E+  
Sbjct: 396 FYCEYDETG-SIGKRYRRQDEIGTPYCITFDFDSLEDKSVTIRERDTMQQVRIKIDELAA 454

Query: 437 YASHRFS 443
           Y  ++F 
Sbjct: 455 YFENKFE 461


>gi|311694385|gb|ADP97258.1| histidyl-tRNA synthetase [marine bacterium HP15]
          Length = 426

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 62/176 (35%), Gaps = 10/176 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V + +R    + G  E+ +P ++  DL+  S G   D   K
Sbjct: 5   QAIRGMNDILPEQTPVWQFVESTVRRVLAQYGYQEIRMPIVEQTDLFKRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   +       +     FR E RP+ G  R
Sbjct: 65  EMYTFEDRNGDSLTLRPEGTAGCVRAAEEHGLLFNQT-RRLWYTGPMFRHE-RPQKG--R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            R+F       F +           + +   R++  LGL     R E   IG   S
Sbjct: 121 YRQFHQIGVECFGMNGPDIDAE---LLILTARLWKELGLAE-HTRLEINSIGTSES 172


>gi|259908927|ref|YP_002649283.1| seryl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224964549|emb|CAX56061.1| Seryl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
          Length = 430

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 20  IASH-KLMLRT-GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H +L  R  G+    +    G    +  GQ AL    ++  + +    + G  E  V
Sbjct: 136 VRDHVELGERAAGLDFAAAVKLTGSRFIVMKGQIALMHRALSQFMLDLHTEQHGYQETYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRN 127
           P L +      +G+   +G+++      +++A        PT E  +T++ R  I    +
Sbjct: 196 PYLVNHASLYGTGQLPKFGEDLFHTRPLDEEASSSNYALIPTSEVPLTNLVRDEILEEES 255

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +       PE S  +  ++     +
Sbjct: 256 LPLKMTAHTPCFRSEAGAYGRDTRGLIRMHQFDKVEMVHV-TRPEDSMDALEELVGHAEK 314

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +   L L    +   +G +G         E  + A     ++    +  DF
Sbjct: 315 VLQLLNLPYRKVLLCTGDMGFGAQKTYDLEVWLPAQDTYREISSCSNMGDF 365


>gi|157813074|gb|ABV81282.1| putative bifunctional aminoacyl-tRNA synthetase [Tanystylum
           orbiculare]
          Length = 134

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+    K    V   S+GI   R +  +     D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIEFEDPKTKQKQNVYQNSWGIT-TRTIGVMTMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P   A +++ +I         +       + CE +  +L   G  V  D       
Sbjct: 74  GLVLPPRAACYQVVIIPCGITASLPQEDKTKLFEMCETLEQKLKCGGVRVMCDIRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|262305699|gb|ACY45442.1| glu- + pro-tRNA synthetase [Achelia echinata]
          Length = 134

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 8/120 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S R I+     + G  +S      F+    K       +      R +  +     D  G
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFDIEFENPKTKQKQYVFQNSFGVTTRTIGVMTMVHGDNTG 74

Query: 338 IIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
           ++ P  VA +++ +I                 + C+ +  +L      V  D       G
Sbjct: 75  LVLPPKVACYQVVIIPCGITASLSDEDKTKLFECCDTLEKKLKDADVRVMGDTRDNYSPG 134


>gi|329298236|ref|ZP_08255572.1| seryl-tRNA synthetase [Plautia stali symbiont]
          Length = 430

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 16/209 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     ++  + +    + G +E  VP L + +    +G+   +G+++
Sbjct: 158 TGSRFIVMQGQIARLHRALSQFMIDLHSQQHGYLETYVPYLVNHETLYGTGQLPKFGEDL 217

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                  ++A        PT E  +T++ R  I    +LP         FR E     R 
Sbjct: 218 FHTKPLGEEAGSSNYALIPTAEVPLTNLVRDEIVEEESLPIKLTAHTPCFRSEAGSYGRD 277

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +       PE S  +  ++     ++   L L    +   +G +G  
Sbjct: 278 TRGLIRMHQFDKVEMVQIVA-PETSMDALEELVGHAEKVLQLLNLPYRKVLLCTGDMGFG 336

Query: 206 LSH----EFIVLADTGETQVFCSKDFMDF 230
            +     E  + A     ++    +  DF
Sbjct: 337 SAKTYDLEVWLPAQDTYREISSCSNMWDF 365


>gi|284163661|ref|YP_003401940.1| seryl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284013316|gb|ADB59267.1| seryl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 459

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 18/212 (8%)

Query: 21  ASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
             ++L     +I +         G Y     G +    +   + +     G +++  P  
Sbjct: 142 PHYELGEELDIIDEQRAAKTTGSGFYFLKGAGAQLEHALIQFMMDLHREQGYVDLFPPIP 201

Query: 75  QSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             +     +G+   +  +  RL      D  D+ +   PT E  +T+++   I    +LP
Sbjct: 202 VKSSSMRGTGQLPKFADDAYRLGGSNEEDYEDEDLWLCPTAEVPVTNMYADEILLQDDLP 261

Query: 130 FTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E         G++R  +F   +  +F + PE S      +      + 
Sbjct: 262 LKHQAYTPNFRREAGEHGTETRGIVRVHQFNKVELVNF-VEPEESYDRLENLLDEAEEVL 320

Query: 186 HRLGLKSIPMRAESGP--IGGDLSHEFIVLAD 215
            +LGL    +   +G        +++  V A 
Sbjct: 321 RQLGLPYRILELCTGDLTFASAKTYDIEVWAP 352


>gi|260434791|ref|ZP_05788761.1| seryl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412665|gb|EEX05961.1| seryl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 425

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 8/172 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L ++     SG+   + +E  R A 
Sbjct: 166 FVTLMGQGARLERGLINFMLDLHTSKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCA- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 225 --EDDLWLTPTAEVPVTSLHRDEIIPADQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           F   + Y F + P+ S+ ++ ++      +   L L    +   +  +G   
Sbjct: 283 FNKVELYWF-VHPDQSEEAHQQITADAEAVLQALELPYRVLDLCTADLGFSA 333


>gi|302798685|ref|XP_002981102.1| hypothetical protein SELMODRAFT_268427 [Selaginella moellendorffii]
 gi|300151156|gb|EFJ17803.1| hypothetical protein SELMODRAFT_268427 [Selaginella moellendorffii]
          Length = 676

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 14/158 (8%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG----------KGIIWPDSVAPFK 348
             T K  D +     +     G  R++  + E   D               +P  VAP K
Sbjct: 498 QVTKKTKDKESFTPSVIEPSFGIGRIIYCLFEHCFDTREGADSVEQLNFFRFPPVVAPVK 557

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            S+ ++   +    +  + I   L + G  V  D  G  IG ++A  D +G P  + V  
Sbjct: 558 CSVFSL-VQNAGLDELAQSISVELRRAGLAVKTDITGRSIGKRYARTDEIGIPFAITV-- 614

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              S+  V ++ R +  +  + +E+V    +   + N+
Sbjct: 615 -DSSEGGVTVRDRDSKEQIRVPVEQVTQLLTDLSAGNK 651



 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           LPF   Q+   FR+E+ PR G++R REF + +   F
Sbjct: 256 LPFGAAQVGQAFRNEISPRQGLLRVREFTLAEIEFF 291



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGR 85
           +++  I+    G++ + P G    DNV +   +        +++  P L    +   SG 
Sbjct: 71  VKSFKIYGGVAGLFDYGPPGSAVKDNVLSFWHQHFVVYDDLLKVDCPCLTPEAVLKASGH 130

Query: 86  YDSYGKEM 93
            D +   M
Sbjct: 131 VDRFTDLM 138


>gi|255015191|ref|ZP_05287317.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 424

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 104/317 (32%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSKQSHQEMLNHVEGLLQKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF +                   ++       +V +   FD+ 
Sbjct: 332 ----------FTAALCFDFEV-------------------YSEAQQRWLEVSSVSNFDTY 362

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
             N+                           +  + K      +    +   R+VAA++E
Sbjct: 363 QANRLKCRY----------------------RDENKKTQLCHTLNGSALALPRIVAALLE 400

Query: 331 SSHDGKGIIWPDSVAPF 347
           ++   +GI  P ++ P+
Sbjct: 401 NNQTPEGIRIPKALIPY 417


>gi|85057874|ref|YP_456790.1| histidyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123725331|sp|Q2NIN2|SYH_AYWBP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|84789979|gb|ABC65711.1| histidyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 427

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/440 (13%), Positives = 132/440 (30%), Gaps = 64/440 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLR 95
           KG +  +         V   IR    +    E+  P ++   ++  +    +   KE   
Sbjct: 6   KGTHDLMLDKMVCWQKVENHIRTLFAKYHLQEIRTPIIEYRGVFDRAAQHSEMVSKETYT 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +   +  +     +    F+     FR E RP+ G  R R+F
Sbjct: 66  FTDKKGRFITLRPEGTAGVIRSYVENKLDKTSQLHKFFYYGPFFRYE-RPQKG--RYRQF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                     +          +F++Y +    LG+  I ++  S  +G   ++   +   
Sbjct: 123 HQVGVEILGQSSPFLD--VEVIFLAY-KTLKSLGICDITVKINS--LGCKTTYNNYLQVF 177

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                   +      P+  E  + + +   +               + +  + D+     
Sbjct: 178 KN---YLQTHYQQLCPLCQERFEKNILRIWDCKNCNNEPFLKQAPRIFDHLVEDAKVRFL 234

Query: 276 RVSARGIEVGHIFYF------GTKY--SLPMSATFKGADGKDHYVQMGSYGIGA------ 321
           +V     ++   F        G  Y  +      +    G  H   +G  G         
Sbjct: 235 QVLEGLKQMNVNFELCHDLVRGLDYYTNSVFEIVYNNEQG--HQAVLGGGGCYDNLVTLF 292

Query: 322 -------------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                        M  + +++ +       I P S+  F      I   +        ++
Sbjct: 293 RGSPSPGIGFALGMERLMSILATRSFCNKNILP-SLDAF------ILVSEPQFFYQGLEL 345

Query: 369 YARLSKVGCDVFWDDMGEQIGSQF-------AVADLLGFP-LQVIVGSKFVSDSKVEIKH 420
              L   G              +F         A L   P   +I+G K  +++++ IK+
Sbjct: 346 ATTLRHQGFSADL-------NYKFLSFSKSLKQA-LKKQPLYLLILGPKEFANNQITIKN 397

Query: 421 RLTGIREDMSLEEVINYASH 440
             T  +  +  ++V++Y  +
Sbjct: 398 TYTQQQTTILQKDVVSYLQN 417


>gi|15605830|ref|NP_213207.1| seryl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|3915066|sp|O66647|SYS_AQUAE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|2982982|gb|AAC06595.1| seryl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 425

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 75/205 (36%), Gaps = 12/205 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G  E+  P L   ++ + +G+   + +++ +    N   +
Sbjct: 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDN---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I    NLP         +R E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + P+ S     K+      +   LGL    +   +G +G   +     E    +  
Sbjct: 287 VKI-VHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++    +  DF     NT F D
Sbjct: 346 KYREISSCSNCEDFQARRMNTRFKD 370


>gi|332880939|ref|ZP_08448609.1| glycine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681113|gb|EGJ54040.1| glycine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 513

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 112/367 (30%), Gaps = 75/367 (20%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +            +   P T + +  +           LPF   QI   FR+E+  R 
Sbjct: 197 MFKTEVGSTAEGSSTIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF            E  +  Y                    ++  +        
Sbjct: 257 FIFRMREF------------EQMEMQY-------------------FVKPGT-------- 277

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            +             +   +   +   ++          +    
Sbjct: 278 -----------------ELQWFETWKKTRMAWHQALGFGAENYRFHDHEKLAHYANAASD 320

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +           GI     F      KYS      F     + +   +    IG  R+ 
Sbjct: 321 IEFHMPFGFKEVEGIHSRTNFDLSQHAKYSGKKIEYFDPETNESYTPYVIETSIGVDRMF 380

Query: 326 AAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            +++  S++ + +           P+++AP K++++ +   D    +   +I + L +  
Sbjct: 381 LSIMCHSYEEEKLENGETRVVLKLPEALAPVKLAVMPLVKKD-GLPEKAHEIISNL-RFH 438

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  +D+  + IG ++   D +G P  V V    + D+ V ++HR T  ++ +++ ++  
Sbjct: 439 FNCKYDE-KDSIGKRYRRQDAIGTPYCVTVDYDTLKDNTVTLRHRDTMEQKRVNIADLQG 497

Query: 437 YASHRFS 443
               R S
Sbjct: 498 IIEDRVS 504


>gi|329766897|ref|ZP_08258425.1| glycyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328837622|gb|EGF87247.1| glycyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 457

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 113/350 (32%), Gaps = 69/350 (19%)

Query: 105 IYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++  +S  + LPF   QI   FR+E+ P   + R+RE         
Sbjct: 165 YLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRTRE--------- 215

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                F ++ L+           G +L             +   
Sbjct: 216 ---------------------FEQMELEFFCE------PGTELDW--HTTWKNNCEKFLL 246

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                   I   + D +++   ++        +            +      R      +
Sbjct: 247 DLGMTKENIRLRDHDQEELSHYSNATTDIEFKFPFGW-------GELWGIASRTDYDLKQ 299

Query: 284 VGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----- 337
             H+ + G         T++  +  +          +G  RV+ A +  +++ +      
Sbjct: 300 --HMEHSGQD------LTYQDLSTNEKFIPYCIEPSVGVDRVLLAFLCDAYNEEEVGEND 351

Query: 338 ----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               + +  ++APFK +++ +        D   ++Y +L      V +D+ G  IG ++ 
Sbjct: 352 TRTVLKFHPALAPFKAAVLPLSKK---LSDKAVEVYQQL-AADFMVDFDETG-SIGKRYR 406

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D +G P  +    +  +D  V ++ R T  +  + + E+  Y   +  
Sbjct: 407 RQDEVGTPFCITYDFESENDGMVTVRDRDTMEQTRIPIAELKQYIEEKIK 456


>gi|59711515|ref|YP_204291.1| seryl-tRNA synthetase [Vibrio fischeri ES114]
 gi|67461597|sp|Q5E6E3|SYS_VIBF1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|59479616|gb|AAW85403.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Vibrio fischeri ES114]
          Length = 435

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +      G  E
Sbjct: 135 DFEVKDHVDLGEMADGLDFASAVKISGSRFIVMKGQFARLHRALSQFMLDLHTEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L + D    +G+   +G+++        +++D   K +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNPDSLFGTGQLPKFGEDLFHTSPLTEQVSDVPLKKLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    ++P         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITDEADMPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGSRKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|330996112|ref|ZP_08320005.1| glycine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329573883|gb|EGG55464.1| glycine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 513

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 112/367 (30%), Gaps = 75/367 (20%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +            +   P T + +  +           LPF   QI   FR+E+  R 
Sbjct: 197 MFKTEVGSTAEGSSTIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF            E  +  Y                    ++  +        
Sbjct: 257 FIFRMREF------------EQMEMQY-------------------FVKPGT-------- 277

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            +             +   +   +   ++          +    
Sbjct: 278 -----------------ELQWFETWKKTRMAWHQALGFGAENYRFHDHEKLAHYANAASD 320

Query: 268 FDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +           GI     F      KYS      F     + +   +    IG  R+ 
Sbjct: 321 IEFHMPFGFKEVEGIHSRTNFDLSQHAKYSGKKIEYFDPETNESYTPYVIETSIGVDRMF 380

Query: 326 AAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            +++  S++ + +           P+++AP K++++ +   D    +   +I + L +  
Sbjct: 381 LSIMCHSYEEEKLENGETRVVLKLPEALAPVKLAVMPLVKKD-GLPEKAHEIISNL-RFH 438

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  +D+  + IG ++   D +G P  V V    + D+ V ++HR T  ++ +++ ++  
Sbjct: 439 FNCKYDE-KDSIGKRYRRQDAIGTPYCVTVDYDTLKDNTVTLRHRDTMEQKRVNIADLQG 497

Query: 437 YASHRFS 443
               R S
Sbjct: 498 IIEDRVS 504


>gi|283138943|gb|ADB12546.1| seryl-tRNA synthetase [uncultured bacterium 9F08]
          Length = 428

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 16/203 (7%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAI 67
            P D      +L    G+    +    G    +  G   +    +   + +      G  
Sbjct: 135 EPLDHVDIGQRL---GGLDFDAASKLTGSRFAVMSGPLARLHRALIQFMLDLHTTEHGYR 191

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E  VP + ++D    +G+   + +++  L   +D      PT E  +T++ R  I     
Sbjct: 192 ETYVPYIVNSDSLRGTGQLPKFEEDLFALQGEHDYY--LIPTAEVPVTNLVREEIIEAAQ 249

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP  F      FR E     R   G++R  +F   +     + PE S  +   +      
Sbjct: 250 LPLCFAAHTPCFRSEAGSYGRDTRGMIRQHQFEKVELVQI-VHPEHSFEALEALTGHAEV 308

Query: 184 IFHRLGLKSIPMRAESGPIGGDL 206
           +  RLGL    M   +G IG   
Sbjct: 309 VLQRLGLPYRLMNLCTGDIGFSA 331


>gi|254524009|ref|ZP_05136064.1| seryl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219721600|gb|EED40125.1| seryl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 426

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    + +   +  ++ + A   D    
Sbjct: 171 ARLHRALAQFMVDLHTGEHGYEETNVPLLVNADSLRGTSQLPKFEDDLFKTAV-GDSTRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIVDAERLPLRMTAHSMCFRAEAGSGGRDVRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           S    PE S   + +M      +  +LGL    +   +G +G         E  + +   
Sbjct: 290 SIS-RPEDSDAEHQRMTRCAEVVLEKLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQET 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|84623645|ref|YP_451017.1| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161898995|ref|YP_200755.2| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188576837|ref|YP_001913766.1| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188577030|ref|YP_001913959.1| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|123522189|sp|Q2P3Y4|SYS_XANOM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|84367585|dbj|BAE68743.1| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521289|gb|ACD59234.1| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521482|gb|ACD59427.1| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 449

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 32/215 (14%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------A 97
            +    +   + +      G  E +VP L +AD    +G+   +  ++ R+         
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFRIYENEYEGHT 230

Query: 98  DRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           D                D A    PT E  +T+I R  I     LP       + FR E 
Sbjct: 231 DEETGESFYTPTGGVDPDPAYYLIPTSEVPLTNIVRDEIIDAERLPLRMTAHSMCFRAEA 290

Query: 144 ----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
               R   G++R  +F   +  +    PE S   + +M      +  +LGL    +   +
Sbjct: 291 GSGGRDTRGMIRQHQFEKVELVTACA-PEDSDAEHQRMTRCAEVVLEQLGLPYRKVLLCT 349

Query: 200 GPIGGD----LSHEFIVLADTGETQVFCSKDFMDF 230
           G +G         E  + +     ++    +  DF
Sbjct: 350 GDMGFSAIKTYDLEVWLPSQNTYREISSCSNCGDF 384


>gi|330840034|ref|YP_004414614.1| Seryl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329747798|gb|AEC01155.1| Seryl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 425

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    + +G+   + ++M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHATKHGYTEMLAPYIANEASMIGTGQLPKFAEDMFKL--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I   R LP  +      FR E     R   G++R  +F
Sbjct: 221 EGLDYYLVPTAEVPTTNYHRDEILDGRKLPERYTSYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F   PE S      M  +   +   L +    +   +G +    +     E  
Sbjct: 281 NKVELIKF-TKPEESWDELEGMVDAAEDVLRILEIPYHVVLLCTGDMSFTSAKTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           + A     ++    + +D+     N  F            
Sbjct: 340 MPAQNTYREISSCSNCLDYQARRANIKFRREPKAKPEFCH 379


>gi|308171904|ref|YP_003918609.1| seryl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307604768|emb|CBI41139.1| seryl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328551712|gb|AEB22204.1| seryl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328909972|gb|AEB61568.1| seryl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 425

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +     E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEYHYTEVIPPYMVNRTSMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S   LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNMHRDEILSDDALPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|317133446|ref|YP_004092760.1| glycyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471425|gb|ADU28029.1| glycyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 459

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 114/365 (31%), Gaps = 71/365 (19%)

Query: 93  MLR----LADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M R    + +     +   P T + +  +       + R +PF   QI   FR+E+ P  
Sbjct: 151 MFRTYQGVTEDAKAQIYLRPETAQGIFVNFLNVQRTTRRKVPFGIGQIGKSFRNEITPGN 210

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +     +       LGL    +R           
Sbjct: 211 FTFRTREFEQMELEFF-CKPGTDLEWFYYWKDTCKNWLLALGLTEDGIRLRD-------- 261

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HE        E   F SK   D                      +            +  
Sbjct: 262 HE-------AEELSFYSKATTDIE----------------FRFPFGWGELWGIADRTDYD 298

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            ++               HI   G          F     + +   +    +GA RV  A
Sbjct: 299 LNA---------------HIRQSGKDLD-----YFDPETNERYVPYVIEPSLGADRVALA 338

Query: 328 VIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            + +++D +          +    ++AP+K +++ +        DA   +Y+ LSK    
Sbjct: 339 FLINAYDEEAVGEKDVRTVLHLHPALAPYKAAVLPLSKK---LGDAALLVYSELSKS-FP 394

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD G  IG ++   D +G P  +       +D  V ++ R +  +E +S+  V  Y 
Sbjct: 395 TEYDDAG-SIGKRYRRQDEIGTPFCITYDFDSQNDGCVTVRDRDSMKQERISIGAVKQYV 453

Query: 439 SHRFS 443
                
Sbjct: 454 LDHLE 458


>gi|150401716|ref|YP_001325482.1| glycyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|150014419|gb|ABR56870.1| glycyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 579

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R+   ++E S + +     +    +V+P K+ +  +  + Q   
Sbjct: 442 GEKVLPHVIEPSHGIDRITFCLLEHSFNEEEDRTYLSINPTVSPIKVGVFPL-VNKQGMP 500

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    I   L K G    +DD G  IG ++   D +G P  + V  + + D+ + I+ R 
Sbjct: 501 EIAMDIKNNLRKNGILAEYDDSGA-IGRRYMRMDEVGAPFCITVDGQTLEDNTITIRERD 559

Query: 423 TGIREDMSLEEVINYASHRF 442
           +  +  + +EEV++Y  ++ 
Sbjct: 560 SREQIRIKIEEVVDYIKNKL 579



 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 63/190 (33%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESG----------- 84
            G   + PLG    +N+    R+         E+  PT+   D+   SG           
Sbjct: 34  AGFVDYAPLGAMLKNNIIDTWRKHYITNEEFYEIDCPTITPHDVLKASGHVDNFTDPMIE 93

Query: 85  --------RYDSYGKE----------------------------------------ML-- 94
                   R D   +E                                        M   
Sbjct: 94  CKECLESYRADHIIEENIDIDTEGKTLEELQQLMETHKITCPKCSGQFGEVKSYNLMFLT 153

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
            +    ++     P   + +   FR   + +RN LPF   QI   +R+E+ PR GV+R R
Sbjct: 154 SIGPSGNRIGYMRPETAQGIFIQFRRLSQFFRNKLPFGVAQIGKAYRNEISPRQGVIRLR 213

Query: 154 EFLMKDAYSF 163
           EF   +A  F
Sbjct: 214 EFTQAEAEFF 223


>gi|88807545|ref|ZP_01123057.1| seryl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88788759|gb|EAR19914.1| seryl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 425

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  E+  P L ++     SG+   + +E  R AD +   + 
Sbjct: 173 GARLERALINFMLDLHTGKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCADDD---LW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I     LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPLTSLHRDEIIPADQLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            F + P+ +  ++  +      +   L L    +   +G +G   
Sbjct: 290 WF-VHPDHAHEAHAAITADAEAVLQALELPYRVLELCTGDLGFSA 333


>gi|260888172|ref|ZP_05899435.1| serine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260862201|gb|EEX76701.1| serine--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 430

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    + +G+   + ++M +L   
Sbjct: 169 FYKGLGARLERACINFMMDLHATKHGYTEMLAPYIANEASMIGTGQLPKFAEDMFKL--- 225

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I   R LP  +      FR E     R   G++R  +F
Sbjct: 226 EGLDYYLVPTAEVPTTNYHRDEILDGRKLPERYTSYTACFRAEAGSAGRDTRGLIRQHQF 285

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F   PE S      M  +   +   L +    +   +G +    +     E  
Sbjct: 286 NKVELIKF-TKPEESWDELEGMVDAAEDVLRILEIPYHVVLLCTGDMSFTSAKTYDIEVW 344

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           + A     ++    + +D+     N  F            
Sbjct: 345 MPAQNTYREISSCSNCLDYQARRANIKFRREPKAKPEFCH 384


>gi|168179549|ref|ZP_02614213.1| histidyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182669807|gb|EDT81783.1| histidyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 415

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 122/426 (28%), Gaps = 37/426 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    LP        +    R      G  E+  P  +  +L+        D   K
Sbjct: 4   QAPKGTKDLLPTESYKWQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F          P   Y      R E        R
Sbjct: 64  EMYTFEDKAGRSITLKPEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLS 207
            R+        F             +    +RI+  LG++   +      IG        
Sbjct: 121 LRQHHQFGIEIFGAKDASVDAE---VISIPVRIYKELGVE--GVELNINSIGCPKCRKTY 175

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E +    +      CS     F           + +   IV+              E  
Sbjct: 176 NEALKKYLSKNYDKLCSTCKTRFDKNPLRILDCKVDTCKEIVKDAPIILDYICGECKEHF 235

Query: 268 FDSLPE-NKRVSARGIE----VGHIFYFGTKYSLPMSATFKGADGKDHYVQM-------- 314
                  +       I+     G  +Y  T +   +      A G+  Y+          
Sbjct: 236 ESLKNYLDVLNINYKIDPFIVRGLDYYSKTVFEFIIDDITICAGGRYDYLIEEIGGPSMP 295

Query: 315 -GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              +G+G  R++  +       K I  P+      + L      D+   +   K+   L 
Sbjct: 296 AVGFGMGMERLLLTL-----QEKTIEIPEE---AYVDLYLGNMGDKAKLEV-LKLAKELR 346

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                   D MG+ + +Q   A+ +G    +++G + ++  K  IK    G +  +++++
Sbjct: 347 DRHIKCEIDHMGKSVKAQMKYANKIGAKYSMVLGEEELNTGKATIKRMEDGEQISVNIKD 406

Query: 434 VINYAS 439
           +     
Sbjct: 407 IDTLIK 412


>gi|154684531|ref|YP_001419692.1| seryl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166200599|sp|A7Z0D5|SYS_BACA2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|52313148|emb|CAH55604.1| Seryl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|154350382|gb|ABS72461.1| SerS [Bacillus amyloliquefaciens FZB42]
          Length = 425

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +     E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEYDYTEVIPPYMVNRTSMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S  NLP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNMHRDEILSGENLPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|300870425|ref|YP_003785296.1| seryl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300688124|gb|ADK30795.1| seryl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 426

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G      +   + ++     G  E   P L +      +G+   + +++ +  D  D A
Sbjct: 170 KGAALERALINFMLKKHTSEHGYTEYVPPMLVNGRTMTGTGQLPKFEEDLFKTTD--DPA 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+I+R  I     LP         FR E     +   G++R  +F   +
Sbjct: 228 LYLIPTAEVPLTNIYREEIIPENMLPLYCTAYTPCFRSEAGSYGKDMRGLIRQHQFDKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   + SK  + KM      I   L L    +   SG IG         E  + + 
Sbjct: 288 LVKICA-ADKSKEEHEKMLKDAESILQALELPYRVVVLSSGDIGNAAYKTFDIEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++    +  D+
Sbjct: 347 NMYREISSVSNCWDY 361


>gi|145537973|ref|XP_001454695.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422466|emb|CAK87298.1| unnamed protein product [Paramecium tetraurelia]
          Length = 243

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 9/141 (6%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             +++  +++   KY L          G    V +    +G++  + AV+     GK   
Sbjct: 3   YTVQLHLLYFLEKKYELGYH---HLKAGFARPVIVHRAILGSLERMIAVLTEQCGGK--- 56

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  ++P ++ L  +       +D  EKI ARL   G  V  D+  + +  +   A +  
Sbjct: 57  WPFWLSPKQLVLCPV---SAYYKDVAEKIAARLRLEGYTVNTDESDQTLAKKVRNAQIQY 113

Query: 400 FPLQVIVGSKFVSDSKVEIKH 420
           +    ++G + V    ++++ 
Sbjct: 114 YNFVGVIGEEEVKAGVIDVRD 134


>gi|170733171|ref|YP_001765118.1| histidyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|206560246|ref|YP_002231010.1| histidyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|229558659|sp|B1JT91|SYH_BURCC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558660|sp|B4EAW8|SYH_BURCJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169816413|gb|ACA90996.1| histidyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|198036287|emb|CAR52183.1| histidyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 446

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 139/442 (31%), Gaps = 59/442 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRASIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +       +      M     R++  LGL  I +          RA      
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F  + D  E             + ++N    DI      +  +    +      
Sbjct: 188 IKYLEQFADVLD--EDAKRRLYTNPLRVLDTKNPALQDIAQNAPKLIDFLGDESRAHFEG 245

Query: 264 NEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHY 311
            ++L  +     +      RG++     +F       G + ++     +           
Sbjct: 246 LQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKP 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIY 369
                + +G  R    ++E   +         +AP +  + +  +    +  R+      
Sbjct: 306 TAACGWAMGIER----ILELLKEED-------LAPEQEGVDVYVVHQG-ETAREQAFIAA 353

Query: 370 ARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
            RL   G DV +    D       SQ   AD  G    VI G + V++  V +K  R  G
Sbjct: 354 ERLRDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAG 413

Query: 425 ------IREDMSLEEVINYASH 440
                 +++ + +E +  +  +
Sbjct: 414 AEGEKNVQQTVPVESLTEFLIN 435


>gi|300867994|ref|ZP_07112633.1| Seryl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300334015|emb|CBN57811.1| Seryl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 424

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 71/204 (34%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +  ++ +     G +E+  P L ++     +G+   + +E  +    +   + 
Sbjct: 173 GAALERAIIQLMLDRHTTAGYVEVIPPFLVNSASLTATGQLPKFAEESFKC---DQDDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +++R  I +   LP         FR E     +   G++R  +F   +  
Sbjct: 230 LIPTSEVPVVNLYRDEILAAEQLPIYHCSYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S   + K+      +   L L    +   +G IG   +     E  + +   
Sbjct: 290 KL-VHPSTSAAEHQKLVQDAEGVLQALKLPYRVIELCTGDIGFSAAKTYDLEVWLPSAGK 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     N  F +
Sbjct: 349 YREISSCSNVGDFQARRANIRFKE 372


>gi|282850506|ref|ZP_06259885.1| histidine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579999|gb|EFB85403.1| histidine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 423

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 134/443 (30%), Gaps = 51/443 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G   +LP        +   +RE     G  E+  P  +   L++       D 
Sbjct: 1   MAIRKPRGTQDFLPEQMIHWHYIEQRMREICKVYGFNEIRTPAFEETKLFLRGIGETTDV 60

Query: 89  YGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM      D    +    P +       +  +    +     +Y +   FR + +P+
Sbjct: 61  VQKEMYTFTTGDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHD-KPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------G 200
            G  R R+F    A                M V   ++    GLK + +   S       
Sbjct: 120 AG--RYRQFHQFGAEVLGSQSPVVDSEVICMVV---QLLKDFGLKDLNVEVNSVGCPTCR 174

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P+  +    F    +  + Q+        +  P    D  +    +  V           
Sbjct: 175 PVYREKLIAFF---EPKKEQLCSDCQERLYKNPLRILDCKNETCKSLSVGAPEIHEHLCE 231

Query: 261 DVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT----------- 301
           + H+            +          RG++      F  +Y+ P+ A            
Sbjct: 232 ECHDHFEELKTYLTAANVQYTLNPRLVRGLDYYTKTAFEVQYT-PLGAQSAVAGGGRYDG 290

Query: 302 -FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG         + +G  R++ A+       K  + P+     + S+  +   D  
Sbjct: 291 LVEELDGPHTPAI--GFAMGMERLLLAL------EKQNLLPEPT--VEPSVFVVALGDAA 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KI   L      V  D  G+ + +Q   A+ +     +I+G   +   +  I+ 
Sbjct: 341 KVE-AFKICQALHDEYITVEMDGQGKSMKAQLKYANKINAKYVIILGDDELVRKEAIIRF 399

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             T  +E +SL  V    +    
Sbjct: 400 MDTSEQETVSLNIVAERITSLVK 422


>gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351174|sp|P47251|SYS_MYCGE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|1045673|gb|AAC71221.1| seryl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078963|gb|ABY79581.1| seryl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 417

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             ++     K L  +  ++ +  N++   E ++P + +      +G+   +  ++ +L  
Sbjct: 159 FVAYTDKAAKLLRAITNLMID-LNKSKYQEWNLPVVINELSLRSTGQLPKFKDDVFKL-- 215

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +      PT E  + ++  + I +  +LP  +    + FR E     +   G +R  +
Sbjct: 216 -ENTRYYLSPTLEVQLINLHANEIFNEEDLPKYYTATGINFRQEAGSAGKQTKGTIRLHQ 274

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE + +    M     +I   L L    +   +G +G         E 
Sbjct: 275 FQKTELVKF-CKPENAINELEAMVRDAEQILKALKLPFRRLLLCTGDMGFSAEKTYDLEV 333

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + A     +V       DF        + DI 
Sbjct: 334 WMAASNEYREVSSCSSCGDFQARRAMIRYKDIN 366


>gi|330721801|gb|EGG99781.1| Seryl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 426

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 12/193 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +      + G  E+ VP + +++    +G+   + +++ ++   ND    
Sbjct: 170 AQLHRALIQFMLNLHTQQHGYEEVYVPYIVNSETLYGTGQLPKFAEDLFKVGSEND--WY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I     LP  F      FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPVTNMYRGEILDAGELPKRFTAHTPCFRSEAGSYGRDTRGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +  ++     ++   L L    +    G +G   +     E  +     
Sbjct: 288 QL-VEPTKSFDALEELVGQAEKVLQLLNLPYRKVILCGGDLGFSATKTYDLEVWLPGQDK 346

Query: 218 ETQVFCSKDFMDF 230
             ++    + +DF
Sbjct: 347 YREISSCSNCLDF 359


>gi|238784519|ref|ZP_04628527.1| Seryl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238714582|gb|EEQ06586.1| Seryl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 430

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 83/239 (34%), Gaps = 21/239 (8%)

Query: 12  QENPRDAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
           +    D E+  H  +     G+    +    G    +  GQ A     ++  + +    +
Sbjct: 128 EPRKYDFEVRDHVSLGEMAGGLDFAAAVKLTGARFVVMKGQIARMHRALSQFMLDLHTEK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFR 119
            G  E  VP L +      +G+   +G+++       +++        PT E  +T++ R
Sbjct: 188 HGYQEAYVPYLVNHATLYGTGQLPKFGEDLFHTKPLEEESDSSNYALIPTAEVPLTNLVR 247

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I    +LP         FR E     R   G++R  +F   +       PE S  +  
Sbjct: 248 DEILEEESLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-TRPEDSMAALE 306

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           ++     ++   L L    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 307 ELTGHAEKVLQLLELPYRKVLLCTGDMGFGSSKTYDLEVWLPAQDTYREISSCSNMWDF 365


>gi|23015682|ref|ZP_00055451.1| COG0124: Histidyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 412

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 141/437 (32%), Gaps = 57/437 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-----LQSADLWVESGRYDS 88
           Q  +G +  LP   +    V  I      R G  E+  P      + +  L   S   D 
Sbjct: 5   QPVRGTHDLLPDESRRHRRVEEIAFSAARRYGFGEIMTPIFEFTDVFARTLGETS---DV 61

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM   +DR+ +++   P     +   F S   + ++LP   +     FR E RP+ G
Sbjct: 62  VTKEMYTFSDRSGESITLRPEGTAGVARAFISGGLA-QSLPLKLFYRGPMFRHE-RPQKG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F         +    +      +     R+   LGL S  +R E   +G   S 
Sbjct: 120 --RLRQFHQVGVELLGVESPLADVE---VIALAWRVLSELGLAS-KVRLEINTLGDAESR 173

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E            F      D     E      + S +    +        +D  +    
Sbjct: 174 ETYRNTLVAYLSEFREALSEDSRNRLERNPLRILDSKDEGDRRIVENAPLMNDSLSPAAR 233

Query: 269 DSLPENKRVSARGIEVGHIFYF------GTKY----SLPMSATFKGAD------GKDHYV 312
           +   +          +G  F        G  Y    +   + T  GA       G+   +
Sbjct: 234 EFFAQVTDGLHA---LGIPFVLNSRLVRGLDYYCHTAFEFTTTELGAQGTVLAGGRYDEL 290

Query: 313 QMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                G+       AA +E      G I PD+V P  +    I   D V   A   +  R
Sbjct: 291 IATMGGVRTPGIGWAAGVERLSMLVGDI-PDTVRPISV----IPMGDAV---AAMVVAER 342

Query: 372 LSKVGCDVFWDDMGEQIGS----QFAVADLLGFP--LQVIVGSKFVSDSKVEIKHRLTGI 425
           L ++GC+V        +G     +  +A          VI+G +  +   V I+   T  
Sbjct: 343 LRRMGCNVE-------MGFSGNMKKRMARANKVNARFAVILGEEESARKAVTIRDLDTST 395

Query: 426 REDMSLEEVINYASHRF 442
           ++++ L ++  +     
Sbjct: 396 QDEVPLAQLEEHLGRLL 412


>gi|289449623|ref|YP_003475535.1| serine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184170|gb|ADC90595.1| serine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 432

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 13/216 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G + +  +G +    +     +E  +     + VP + +      +G++  + +++  
Sbjct: 158 GNGFWIYKNMGARLEWALLNYFMQEHLKDNYEMLLVPHILNYTCGFTAGQFPKFKEDVFW 217

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RF 147
           L               PT E  + +++R  I    +LP  F+     +R E         
Sbjct: 218 LVSEEGTEEANRQFILPTAETALVNLYRDEILDESDLPKKFFAYTPCYRKEAGSYRAEER 277

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IG 203
           G++R  +F   + + + L PE S  +++++     R+   LGL     +  +G     + 
Sbjct: 278 GMIRGHQFNKIEMFQYTL-PENSAQAFDELVDKACRLVAGLGLHFRLSKLAAGDCSASMA 336

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                E  + +     +V  + +  D+     N  F
Sbjct: 337 RTDDIEIWIPSMNDYKEVSSASNACDYQARRGNMKF 372


>gi|126668581|ref|ZP_01739535.1| histidyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126626986|gb|EAZ97629.1| histidyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 417

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 137/438 (31%), Gaps = 61/438 (13%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP        V A +R+   + G  E+ +P ++  DL+  S G   D   KEM    DRN
Sbjct: 5   LPEQTPVWQYVEATVRKVLGQYGYQEIRMPIVEQTDLFKRSIGEVTDIVEKEMYTFDDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   +      +Y     FR E RP+ G  R R+F     
Sbjct: 65  GDSLTLRPEGTAGCVRAAEQHGLLFNQTRRMWYT-GQMFRYE-RPQKG--RYRQFHQVGV 120

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F +           + +   R++   GL     R E   IG   +      A     Q
Sbjct: 121 ECFGMAGPDIDAE---LLMLTARLWKTFGLAD-HARLEINSIGTAEARRNYREALVAYLQ 176

Query: 221 VFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            F ++   D            + S++     ++     ++ W    +       ++L D+
Sbjct: 177 QFKAELDEDSQRRLESNPLRILDSKSAATRKVLEQAPKLDAWLDDESRDHFERLKQLLDA 236

Query: 271 LPENKRV---SARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
                 V     RG++     +F       G + ++     + G              + 
Sbjct: 237 AGIEYTVNPALVRGLDYYGKTVFEWITESLGAQGTICAGGRYDGLVEQLGGKPTVAVGFA 296

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKV 375
           +G  R               + P+SV   +  +      DQ    A    E++  +L   
Sbjct: 297 MGVER------LILLLETLNLIPESVN-NQADVYVTAMGDQAVSPALLLAEELRDQLPGY 349

Query: 376 GCDVFWDDMGEQIG------SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
                       IG       +     AD  G    +I+G   + +  V +K   T   +
Sbjct: 350 II----------IGHCGAGSFKSQMKKADRSGARYALILGDNELQNQSVGLKSLRTDEPQ 399

Query: 427 EDMSLEEVINYASHRFSN 444
           ++   ++V    +   S+
Sbjct: 400 QEFPRQQVAEALAQALSH 417


>gi|82544963|ref|YP_408910.1| histidyl-tRNA synthetase [Shigella boydii Sb227]
 gi|123741953|sp|Q31XX6|SYH_SHIBS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81246374|gb|ABB67082.1| histidine tRNA synthetase [Shigella boydii Sb227]
 gi|320185214|gb|EFW59994.1| Histidyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332092796|gb|EGI97865.1| histidyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 424

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 129/431 (29%), Gaps = 35/431 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D N  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDLNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           + +   R +  LG+    +  E   IG   +    
Sbjct: 122 YRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISE-HVTLELNSIGSLEARANY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDS 270
             A     +    K   D            + S N  +        A    +  E     
Sbjct: 178 RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHF 237

Query: 271 LPENKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADG-KDHYVQMGSYGIGAM---- 322
               K + + GI          G   Y+  +      + G +      G Y         
Sbjct: 238 AGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAP-------FKISLINIKAHDQ-VCRDACEKIYARLSK 374
           R   AV  +    + ++   +V P         I L+   A  Q       E++   L  
Sbjct: 298 RATPAVGFAMGLERLVLLVQAVNPEFKADPIVDIYLVASGADTQSAAMALAERLRDELQG 357

Query: 375 VGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           V             G    QFA AD  G  + V++G   V++    +K   +G +  ++ 
Sbjct: 358 VKLM-----TNHGGGNFKKQFARADKWGARVAVVLGESEVTNGTAVVKDLRSGEQTAVAQ 412

Query: 432 EEVINYASHRF 442
           + V  +     
Sbjct: 413 DSVAAHLRTLL 423


>gi|121601913|ref|YP_988834.1| seryl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|166200601|sp|A1US81|SYS_BARBK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|120614090|gb|ABM44691.1| seryl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 425

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 82/304 (26%), Gaps = 70/304 (23%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   N  G  E+S+P L   ++   + +   +  ++ R  D          T
Sbjct: 176 RALGQFMLDVHVNEHGYEEISLPLLVRDEIVYGAAQLPKFSDDLFRTTD----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  + ++    +    +LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLVNLVNGEVLHESDLPLRFSSLTPCFRSEAGAAGRDTRGMLRQHQFWKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T E S     +M      +  RL L    +   +G +G                      
Sbjct: 291 TEEQSLIELERMTECAEDVLKRLELPFRTVVLSTGDMG---------------------- 328

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                                 I                    D          R     
Sbjct: 329 --------------FASCKTYDIEVWLPGQGCYREISSCSVCGDFQGRRMNARYR----- 369

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDS 343
                            K  D   H+V  +   G    R + A++E+     G II P +
Sbjct: 370 -----------------KDGDKTLHFVHSLNGSGTAIGRCLIAILENYQQADGSIIIPGA 412

Query: 344 VAPF 347
           + P+
Sbjct: 413 LQPY 416


>gi|329897036|ref|ZP_08271808.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328921476|gb|EGG28862.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 424

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 156/439 (35%), Gaps = 49/439 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP+  ++   +   +R      G  E+ +P L+S  L+  S G   D   K
Sbjct: 5   QAIRGMPDILPVDTESWQWLEQKVRNLVQSYGYQEIRMPILESTHLFARSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM   ADRN  ++   P           ++++ S    P   +     FR E RP+ G  
Sbjct: 65  EMYTFADRNGDSLTLRPEGTAGCVRAAIQNNLIST---PQRLWYQGPMFRHE-RPQKG-- 118

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R R+F      +F +    +      +     R++  LG+  + +  +   IG   +   
Sbjct: 119 RLRQFQQIGLEAFGVATPDADAE---LIALSARLWRELGVADV-VELQLNSIGSLEARAT 174

Query: 209 ------EF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                 E+     AD  E      +      + S+N    ++++    +  +    +A  
Sbjct: 175 YKAALVEYLSKHQADLDEDSQRRLQTNPLRILDSKNAGTQELLNNAPNLHDFLDDESAND 234

Query: 261 DVHNEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG----AD 306
                 L DS+  + +      RG++     +F       G + ++     + G      
Sbjct: 235 FARLRTLLDSVGVHYKVNPKLVRGLDYYNKTVFEWVTTELGAQGTICAGGRYDGLVAQLG 294

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK        + +G  RV+  +        GI  P S AP    +   +A ++ C    E
Sbjct: 295 GKTTPGV--GFAMGLERVLLLLAAQ-----GITAPRS-APLAFGVGVGEAGEKACFTGIE 346

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI 425
            +   L +       +  G    +Q   AD  G  + +I G     +  V +K  R    
Sbjct: 347 ALRNDLPQHDIR--LNTGGGSFKAQMKRADKSGARVALIWGDSEAENDTVTLKFLRDDEP 404

Query: 426 REDMSLEEVINYASHRFSN 444
           ++ ++   ++     R SN
Sbjct: 405 QKTVA-SALLTQELERISN 422


>gi|301311140|ref|ZP_07217068.1| serine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300830714|gb|EFK61356.1| serine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 424

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 104/317 (32%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSKQSHQEMLNHVEGLLQKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF +                   ++       +V +   FD+ 
Sbjct: 332 ----------FTAALCFDFEV-------------------YSEAQQRWLEVSSVSNFDTY 362

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
             N+                           +  + K      +    +   R+VAA++E
Sbjct: 363 QANRLKCRY----------------------RDENKKTQLCHTLNGSALALPRIVAALLE 400

Query: 331 SSHDGKGIIWPDSVAPF 347
           ++   +GI  P ++ P+
Sbjct: 401 NNQTPEGIRIPKALIPY 417


>gi|217316857|gb|ACK37834.1| putative glutamyl-prolyl tRNA synthetase [Cosmonotus grayi]
          Length = 121

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  + K   Y    S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETKNKQYCYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGC 377
           G++ P  VA  ++ ++ +               DAC+ + A L + G 
Sbjct: 74  GLVLPPQVASIQVIIMPVGITAKSSDQDKANLTDACKTLEAELKEGGV 121


>gi|150007194|ref|YP_001301937.1| seryl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298377619|ref|ZP_06987571.1| serine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|149935618|gb|ABR42315.1| seryl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298265638|gb|EFI07299.1| serine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 424

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 104/317 (32%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSKQSHQEMLNHVEGLLQKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF +                   ++       +V +   FD+ 
Sbjct: 332 ----------FTAALCFDFEV-------------------YSEAQQRWLEVSSVSNFDTY 362

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
             N+                           +  + K      +    +   R+VAA++E
Sbjct: 363 QANRLKCRY----------------------RDENKKTQLCHTLNGSALALPRIVAALLE 400

Query: 331 SSHDGKGIIWPDSVAPF 347
           ++   +GI  P ++ P+
Sbjct: 401 NNQTPEGIRIPKALIPY 417


>gi|284048847|ref|YP_003399186.1| histidyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283953068|gb|ADB47871.1| histidyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 417

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 66/418 (15%), Positives = 131/418 (31%), Gaps = 31/418 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+    +G    LP           IIRE        E+  P  +  +L+        D 
Sbjct: 1   MLTGVPRGTKDILPGTINGWRYAEQIIREVCREFNYQEIRTPIFEHTELFQRGIGDGTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR+ +++   P +   +   F  +      +P   + I   FR + RP+ G
Sbjct: 61  VDKEMYTFTDRSGRSLTLRPENTASVVRSFVENKLYAEPMPLKVFYIGPMFRYD-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPMRAES------G 200
             R R+F       F +   G++      ++ +  L +  R GLK + ++  S       
Sbjct: 120 --RMRQFHQ-----FGVEALGAESPVVDAEVILLALTVLKRFGLKDLKLKINSVGCPNCR 172

Query: 201 PIGGDLSHEFI--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           P    L  ++    L +  E             +  +       ++    +         
Sbjct: 173 PQHRKLLQDYFRPHLDELCEDCQSRFDRSPLRILDCKVDADKPFMAGAPKITDHLCDECR 232

Query: 259 TSDVHNEKLFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                 +KL D             RG++      F  +Y+ P+ A      G  +   + 
Sbjct: 233 AHFETVKKLLDEAGVEYEVDSNLVRGLDYYTKTAFEIQYA-PLGAQSAVGGGGRYDGLVE 291

Query: 316 SYGIGAMRVVAAVI----ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             G  +   V   I          K  + P       + +  +   +    D   ++   
Sbjct: 292 ELGGPSTPGVGFAIGLERILLAMEKQNLLPT--GKEAVDIFAVIPDEGGVTD-AFRVITN 348

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L   G     + +   + +Q   A+       +I G +  S   V +++     +E++
Sbjct: 349 LRNKGLVCDMNLVERSMKAQMKQANREQARFALIFGEEERSRGAVTVRNMADSSQEEV 406


>gi|56476109|ref|YP_157698.1| histidyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|81677555|sp|Q5P7B4|SYH_AZOSE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56312152|emb|CAI06797.1| histidyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 438

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 134/439 (30%), Gaps = 49/439 (11%)

Query: 31  MIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-Y 86
           MI   Q  +G+   LP   +A ++   I+R+     G   + +P ++   L+  + G   
Sbjct: 7   MIQALQAVRGMNDILPDEAEAWEHFEDIVRDWLRSYGYRPIRMPIVEPTPLFKRAIGEVT 66

Query: 87  DSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           D   KEM    D  N + +   P              K         Y     FR E RP
Sbjct: 67  DIVEKEMYSFEDALNGEQLTLRPEG-TASCVRAAIQHKMLSAGAQRLYYHGPMFRHE-RP 124

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           + G  R R+F      +           +  M     R++   GL+ + +   S    G 
Sbjct: 125 QKG--RYRQFHQIGVEALGFDGPDIDAEHILMCA---RLWDDFGLEDVRLELNS---LGS 176

Query: 206 LSHEFIVLAD---------------------TGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                   A+                     T   ++  +K+     +        D + 
Sbjct: 177 SDERARHRAELVAYLERHRERLDDDGRRRLHTNPLRILDTKNPELQDLVDNAPKLLDFLG 236

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +S+                 ++   L        R +        G + ++     + G
Sbjct: 237 EDSLKHFNGVQVLLKDAGVPYRINHRLVRGLDYYNRTVFEWVTTRLGAQGTVCAGGRYDG 296

Query: 305 --ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                         + +G  R++ A+   S             P +  +  +   +Q  R
Sbjct: 297 LVEQLGGRPAPAAGFAMGIERLL-ALWRESGGEAE--------PAQPDVYVVHLGEQAQR 347

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HR 421
               +    L   G  V     G    SQ   AD  G P+ V++G    +  +V +K  R
Sbjct: 348 -LAFRAAEALRSHGFAVLMHCGGGSFKSQMKKADASGAPVAVVIGDDEAATGEVGLKPLR 406

Query: 422 LTGIREDMSLEEVINYASH 440
             G ++ ++L+ + N  + 
Sbjct: 407 GPGGQQRVALDGLANAVAE 425


>gi|116669891|ref|YP_830824.1| glycyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|116610000|gb|ABK02724.1| glycyl-tRNA synthetase [Arthrobacter sp. FB24]
          Length = 461

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 72/462 (15%), Positives = 151/462 (32%), Gaps = 66/462 (14%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQSADL 79
            + + G I+  S+  + + PLG +  +N+       ++R  ++  G   +    +    +
Sbjct: 19  FVFQAGEIYGGSRSAWDYGPLGAELKENIKRQWWQSVVRGREDVVG---LDSSVILPRQV 75

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  + +      L +       Y   H E   +  +                  + 
Sbjct: 76  WEASGHVEVFSD---PLVECLSCHKRYRADHLEEEYEEKKGRPAENGLKDIACANCGTRG 132

Query: 140 RD-ELRPRFGVMRSREFL---MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              E +   G++++  FL     +     L PE ++     +FV++  +           
Sbjct: 133 EWTEPQEFSGLLKT--FLGPVANEEGMHYLRPETAQ----GIFVNFNNVLTT---SRKKP 183

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
               G IG    +E         T+ F   +   F  P  +  +        +       
Sbjct: 184 PFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEQWHQYWMKERMDWYTGLG 243

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATF 302
             A +    E   + L    + +    ++ + F F              T + L   +  
Sbjct: 244 LKAENLRFFEHPLEKLSHYSKGTT---DIEYRFGFQGSEWGELEGIANRTDFDLTTHSKA 300

Query: 303 KGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWP 341
            G D         + +   +     G  R   A +  ++                 +   
Sbjct: 301 SGHDLSYFNQATNERYTPYVIEPAAGLTRSFMAFLIDAYTEDEAPNAKGGVDVRTVLKLD 360

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGF 400
             +AP K +++ + + ++      + + A+L K    D  +DD G  IG ++   D +G 
Sbjct: 361 PRLAPVKAAVLPL-SRNEDLSPKAKALGAQLRKNWNID--FDDAGA-IGRRYRRQDEIGT 416

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           P  + V    + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 417 PFCITVDFDTLEDQAVTIRERDTMSQERVSLDKVEGYLAARL 458


>gi|319740169|gb|ADV60378.1| glu- + pro-tRNA synthetase [Manduca sexta]
          Length = 134

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +  A+ ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVYDDAETQEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++             +   D+C  +   L   G     D       
Sbjct: 74  GLVLPPRIAEIQAIVVPCGVTAASTADERKALIDSCXALVDDLLAAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|323525163|ref|YP_004227316.1| seryl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323382165|gb|ADX54256.1| seryl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 431

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+  +      G    +  GQ A     +   + +    + G  E+
Sbjct: 133 DFEVKDHVDVGAPLGLDFETGAKLSGARFTMLRGQIARLHRALAQFMIDTHTQQHGYTEI 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + ++   +G+   +  +M R+     +         T E  +T+  R  I    
Sbjct: 193 YTPYIVNPEILYGTGQLPKFADDMFRVEKGGGENTVTQYLISTSEISLTNTVRESIVEAN 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +       PE S  +  +M     
Sbjct: 253 ALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVA-PETSYDALEQMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 TILQKLELPYRVITLCTGDMGFSATKTYDLEVWLPAQNTYREISSCSNTESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           + +      +V 
Sbjct: 372 YRNAQGKPELVH 383


>gi|328954350|ref|YP_004371684.1| Seryl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454674|gb|AEB10503.1| Seryl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 425

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 9/158 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G +E+  P + +      +G+   + +++ +L D +       PT
Sbjct: 174 RALINFMLDLHTQKHGYLEVWPPFIINRASAQGTGQLPKFKEDLFKLEDWD---YYLTPT 230

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+I R  I +   LP ++      FR E     +   G++R  +F   +   F  
Sbjct: 231 AEVPVTNIHRDEILAEEALPISYTAYTPCFRSEAGSHGKDVRGLIRQHQFDKVELVKFTA 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            PE S  +  K+      +   L L    +   +G +G
Sbjct: 291 -PESSYEALEKLLSDAEEVLQELELPYQVVVLCTGDMG 327


>gi|238019657|ref|ZP_04600083.1| hypothetical protein VEIDISOL_01531 [Veillonella dispar ATCC 17748]
 gi|237863698|gb|EEP64988.1| hypothetical protein VEIDISOL_01531 [Veillonella dispar ATCC 17748]
          Length = 426

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 70/204 (34%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  + D     
Sbjct: 168 LGARLERALINFMVDLHVDKQGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVEDT---E 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHSGEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S      +  +   +   L L    +   +G IG   +     E  + A 
Sbjct: 285 MVKL-AKPEDSYKELETLTDNAEEVLRLLELPFRVITLCTGDIGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|39995148|ref|NP_951099.1| seryl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|67461826|sp|Q74H55|SYS_GEOSL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|39981910|gb|AAR33372.1| seryl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298504178|gb|ADI82901.1| seryl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 422

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 46  GQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +        +EM  P + + +    +G+   +  ++  L        
Sbjct: 168 GARLERALVNFMLDLHTERHNYLEMLPPFVVNRESMTGTGQLPKFEDDLFHL---EGVDY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R+ I    +LP ++      FR E     +   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRAEILKAADLPLSYTAYTPCFRKEAGSYGKDVRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F + P  S     K+  +   +  +LGL    +   +G +G   +     E  +    
Sbjct: 285 VKF-VHPATSYDELEKLLSNAEEVLRQLGLAYRVVELCTGDMGFSAAKTYDIEVWLPGQE 343

Query: 217 GETQVFCSKDFMDF 230
              ++    +F DF
Sbjct: 344 TYREISSCSNFEDF 357


>gi|289523031|ref|ZP_06439885.1| serine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503574|gb|EFD24738.1| serine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 430

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    +   + +      G +E   P + ++     +G+   +  ++      +   
Sbjct: 172 NGARLARALINFMLDLHTREHGYLEFEPPFIVNSKTMTGTGQLPKFANDLYHCESDD--- 228

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T++    I     LP  +      FR E     R   G++R  +F   +
Sbjct: 229 LWLIPTAEVPLTNMHAEEILDEDVLPLYYTAYTPCFRREAGSHGRDVRGMLRQHQFDKVE 288

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 TPE S     K+  +   +  RLGL    +   +G +G   S     E  + + 
Sbjct: 289 LVKI-CTPETSYDELEKLTQNAEEVLKRLGLPYRVVCLCTGDMGFAASKTYDLEVWLPSQ 347

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     NT +
Sbjct: 348 NTYREISSCSNCEDFQARRMNTRY 371


>gi|253698745|ref|YP_003019934.1| seryl-tRNA synthetase [Geobacter sp. M21]
 gi|259511671|sp|C6E7Z3|SYS_GEOSM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|251773595|gb|ACT16176.1| seryl-tRNA synthetase [Geobacter sp. M21]
          Length = 422

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +   +    IEM  P + + +    +G+   + +++           
Sbjct: 168 GARLERALINYMLDLHIDEHKYIEMLPPFMVNRECMTGTGQLPKFEEDLF---HMEGVDF 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP ++      FR E     +   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRGEILKGSDLPISYVAYTPCFRKEAGSYGKDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             F  +PE S     K+      +  RL +    +   +G IG   +  F + 
Sbjct: 285 VKF-TSPEDSYEQLQKLLGHAEEVLRRLQIPYRVVELCTGDIGFSAAKTFDIE 336


>gi|171911399|ref|ZP_02926869.1| seryl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 423

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 80/254 (31%), Gaps = 17/254 (6%)

Query: 9   PILQENPRDAEIASHK---LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-T 64
           P     P+D      +   L    G           +   G +    +   + +      
Sbjct: 132 PTYDFAPKDHVALGAQHGMLDFEAG-AKITGSAFVVYRGAGARLERALINFLLDLHTTSH 190

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E++ P +  AD  V + +   +     ++    +  +   PT E  +T++ R  I  
Sbjct: 191 GYTEVNTPFVVKADALVGTTQLPKFAD---QVYHCQEDDLYLVPTAEVPVTNLHREEIVK 247

Query: 125 YRNLPFTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP  +      FR E         G++R  +F   +      TPE S     K+  +
Sbjct: 248 AESLPIQYAAYTPCFRREAGSAGLGTRGLIRMHQFDKVELVKI-TTPETSMDELEKLTAN 306

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +   LGL    +   +G +G   +     E          +V    +F +F     N
Sbjct: 307 AEAVLQTLGLHYRIIELCTGDVGFGSTKTYDIEVWAPGQGTYLEVSSCSNFGEFQARRMN 366

Query: 237 TDFDDIISLNSIVE 250
             + D    N    
Sbjct: 367 LRYKDENGKNRFCH 380


>gi|27466925|ref|NP_763562.1| seryl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57865923|ref|YP_190086.1| seryl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|30173136|sp|Q8CU95|SYS_STAES RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461620|sp|Q5HK07|SYS_STAEQ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|27314467|gb|AAO03604.1|AE016744_7 seryl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57636581|gb|AAW53369.1| seryl-tRNA synthetase [Staphylococcus epidermidis RP62A]
          Length = 428

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPELFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S  +  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRI-VQPEDSWDALEEMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|120598179|ref|YP_962753.1| histidyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|146293747|ref|YP_001184171.1| histidyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166228615|sp|A4Y8T9|SYH_SHEPC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228617|sp|A1RHQ4|SYH_SHESW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|120558272|gb|ABM24199.1| histidyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|145565437|gb|ABP76372.1| histidyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|319427121|gb|ADV55195.1| histidyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 425

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 148/449 (32%), Gaps = 72/449 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V A++R   +  G  E+  P +++ DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKVEAVLRSSVSAYGYSEIRTPIVENTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAES------GPIGG 204
            R+F       + +           + +   R++ +LG+   + +   +           
Sbjct: 122 YRQFHQFGVEVYGIGSADIDAE---VLMLSARLWEKLGISEHVTLELNTLGDPAERAAYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D    F+        +    + + +    + S++     I++    +  +    ++    
Sbjct: 179 DALIAFLEQHKDKLDEDSQRRMYSNPLRVLDSKDPQVQGILTDAPALMDYLGEESSQHFA 238

Query: 263 HNEKLFDSLPENKR---VSARGIEVG--HIFYF-------------GTKYSLPMSATFKG 304
              +L D++    R      RG++     +F +             G +Y   + A   G
Sbjct: 239 QLRELLDAVGIQYRVNPRLVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRY-DGLVAQLGG 297

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D       MG      +  +  ++E+    + I       P  + +      +    +A
Sbjct: 298 KDTPAVGFAMG------LERIVLLLETLGLTQDI-------PAAVDVYVTAMGENCLVEA 344

Query: 365 CEKIYARLSKV-----------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
             K+   L              G +V           Q   AD  G  + +++G + +++
Sbjct: 345 I-KVAQELRSALPHLKVMSHCGGGNVK---------KQMKRADKSGASVALLIGEEELAE 394

Query: 414 SKVEIKH-RLTGIREDMSLEEVINYASHR 441
             V +KH R    ++ ++   +  + +  
Sbjct: 395 GMVTVKHLRNDNEQQQVARNALSAFLAEL 423


>gi|300781071|ref|ZP_07090925.1| histidine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532778|gb|EFK53839.1| histidine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 441

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 132/433 (30%), Gaps = 50/433 (11%)

Query: 35  HSKGIYSWLPLGQKALDNVN-AIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
             KG+  ++P        V    +R+ Q   G   + +P  +   L+        D   K
Sbjct: 18  APKGVPDYVPPTSATFHAVRSEFVRQAQ-LAGYQHIELPIFEDTTLFARGVGESTDVVSK 76

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADR D+++   P     +      H      LP         FR E RP+ G  R
Sbjct: 77  EMYTFADRGDRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLNYYGPFFRYE-RPQAG--R 133

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+       +  +           +     R +  +GL    +   S       P    
Sbjct: 134 YRQLQQVGVEAIGVDDPLLDVE---VIALADRCYRAVGLTGYRLELTSLGDSTCRPAYRQ 190

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              +F++     E     ++      +  +  +  ++ +   ++    +           
Sbjct: 191 KLQDFLLDLPLDEETRHRAQINPLRVLDDKRPEVQEMTADAPLMLDHLSDECRAHFETVT 250

Query: 266 KLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYV 312
              D L     ++ R             E  H    G +  +     + G  A      +
Sbjct: 251 GSLDDLGIAYTINPRMVRGLDYYTKTCFEFVHDG-LGAQSGIGGGGRYDGLMAQIGGQDL 309

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +G+G  R V A+       +G+     V  + + +      +Q  +     +   L
Sbjct: 310 SGIGFGLGVDRTVLALEAEGVQIEGV--DQRVVAYGVGI-----GEQAQKRMAL-LIDEL 361

Query: 373 SKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              G            G +        AD  G    +++G + +   ++ +K+     ++
Sbjct: 362 RANGISA-----DMSYGGRGLKGAMKGADRSGAGAALVLGERELEAGEITVKNLEDQTQK 416

Query: 428 DMSLE--EVINYA 438
            ++L+  E+I+  
Sbjct: 417 TVALDVHEIIDAI 429


>gi|217316869|gb|ACK37840.1| putative glutamyl-prolyl tRNA synthetase [Kiwa hirsuta]
          Length = 134

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  +  +  +    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFDIVFEDPETNQKKFCFQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVC-----RDACEKIYARLSKVGCDVFWDDMG 385
           G++ P   A  ++ ++   I A           + C+K+   L      V  D   
Sbjct: 74  GLVLPPRAASVQVIIMPVGITAKSSEQDKNNLLEECKKLEKNLISHDVRVRCDTRD 129


>gi|167836396|ref|ZP_02463279.1| histidyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 446

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 67/440 (15%), Positives = 138/440 (31%), Gaps = 55/440 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFVDSLNGEHLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYLGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLS 207
           +F      +       +      M     R++  LGL  I +       AE         
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLAGIKLEINSLGLAEERAAHRVEL 187

Query: 208 HEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +++             + + +    + ++N    +I+     +  +    +       +
Sbjct: 188 IKYLEQHAESLDDDAQRRLYTNPLRVLDTKNPALQEIVQNAPKLIDFLGDASRAHFEGLQ 247

Query: 266 KLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHYVQ 313
           +L  +            RG++     +F       G + ++     +             
Sbjct: 248 RLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTA 307

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIYAR 371
              + +G  R++  + E +           + P +  + +  +   D   R+       R
Sbjct: 308 ACGWAMGVERILELLKEEN-----------LMPEQEGVDVYVVHQGD-AAREQAFIAAER 355

Query: 372 LSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG-- 424
           L   G DV      +  G+ F      AD  G    VI G   V++    +K  R  G  
Sbjct: 356 LRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVANGAASVKPLRGAGAD 415

Query: 425 ----IREDMSLEEVINYASH 440
               +++ + +E +  +  +
Sbjct: 416 GEKNVQQSVPVESLTEFLIN 435


>gi|110598295|ref|ZP_01386570.1| glycyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340103|gb|EAT58603.1| glycyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 489

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 75/482 (15%), Positives = 140/482 (29%), Gaps = 68/482 (14%)

Query: 19  EIASHKLM---LRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           +   HKL+    R G I+  S         + + PLG +   N+  +      R     +
Sbjct: 17  DKVMHKLVSLAKRRGFIYPSSEIYEGLSSCFDYGPLGSELKKNIKELWWNTMTRRHQNIV 76

Query: 70  SV--PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +    L +  +W  SG   S+   M  + DR  K         E   +  R   K    
Sbjct: 77  GIDASILMNPRVWEASGHVASFNDPM--IDDRTTKRRYRADHLIENHIEKLRRDGKDEE- 133

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS---YNKMFV----- 179
                 ++Q  + +            E ++ +      T  G       +N MF      
Sbjct: 134 ----LQKVQSAYENVASAEDSNRALYELIIAEKIKAPDTGSGDWTEVRQFNLMFQCNMGA 189

Query: 180 -------SYLRIFHRLGL--KSIPMRAESGP--------IGGDLSHEFIVLADTGETQVF 222
                   YLR     G+      +R  S          IG    +E +          F
Sbjct: 190 VADKSSIVYLRPETAQGIFVNFHNVRESSRMRVPFGIAQIGKAFRNEIVKGNFIFRMVEF 249

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQ------WTAPYAATSDVHNEKLFDSLPENKR 276
              +   F  P       +                                 D   + K 
Sbjct: 250 EQMEMQYFVKPGTQKGAFEAWREERFAWYSTALGLRAEKLHWYKHDKLAHYADLAYDIKY 309

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAV 328
               GIE     +  T + L     + G +         +     +     G  R+  A+
Sbjct: 310 EFPFGIEEIEGIHSRTDFDLKQHQEYSGKNMEYIDQLTNERFIPYVVETSAGCDRLFLAL 369

Query: 329 IESSHDGK--------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +  ++            +     VAP K +++ +        +   ++   LS+    V 
Sbjct: 370 LADAYREDVVDGEERVMLKLAPKVAPVKAAVLPL-MKKGGMGEKAAQLRDELSES-FLVQ 427

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +DD G  IG ++   D +G P  + V  + + +  V ++ R +  +E + L  V  +   
Sbjct: 428 YDDAG-SIGKRYRRQDEIGTPFCITVDHQSLEEGTVTVRFRDSAAQERIDLSRVREFICE 486

Query: 441 RF 442
           + 
Sbjct: 487 KL 488


>gi|257068863|ref|YP_003155118.1| glycyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559681|gb|ACU85528.1| glycyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
          Length = 463

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 109/357 (30%), Gaps = 74/357 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
               P   + +   F + + + R  P F   QI   FR+E+ P   + R+REF   +   
Sbjct: 160 HFLRPETAQGIFVNFLNVVNATRQKPPFGIGQIGKAFRNEITPGNFIFRTREFEQMEI-- 217

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV- 221
                                                         E+   A+  E Q  
Sbjct: 218 ----------------------------------------------EYFTPAEQAEAQFD 231

Query: 222 -FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            +    +  F     + D      +        +      +           E   ++ R
Sbjct: 232 EWVEACWNWFIDLGIDADNLRRFDVPDSERAHYSAATIDLEYRFGFTGSEWGELMGIANR 291

Query: 281 GIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG- 337
                  F     T  S      F  A  + +   +     G  R + A +  ++     
Sbjct: 292 -----TDFDLSSHTDASGTKMQYFDQAANERYTPYVIEPSFGLTRSMMAFLVDAYTEDEA 346

Query: 338 ------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       +     +AP K++++ + +  +       ++  +L +   +V  D + 
Sbjct: 347 PNAKGGVDKRTVLKLDPRLAPVKVAVLPL-SKSEALVPRATELADQLRRHW-NVEMD-VT 403

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + IG ++   D +G P  V V  +   D  V I+ R +  +E ++L++V +Y + R 
Sbjct: 404 QAIGRRYRRQDEIGTPFCVTVDFETAEDQSVTIRERDSMAQERVALDQVESYLAARL 460


>gi|254285478|ref|ZP_04960442.1| histidyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|150424340|gb|EDN16277.1| histidyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 422

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 143/438 (32%), Gaps = 52/438 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  +++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+ +  +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGI-AQHVRLELNSIGSLEARA 175

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-EKLF 268
               A     + + +    D            + S N  V+         SD  + E   
Sbjct: 176 NYRTALIDYLEQYQNVLDEDCKRRMYTNPLRVLDSKNPYVQAILGDAPQLSDYLDAESKQ 235

Query: 269 DSLPENKRVSARGIEVGHIFYF--GTKY-----------SLPMSATFKGA---------- 305
                 + + A GIE         G  Y           SL    T  G           
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITESLGSQGTVCGGGRYDGLVEQL 295

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            GK        + +G  R+V  ++E+  +             +   + +    +    A 
Sbjct: 296 GGKPTPAV--GFAMGLERLVL-MMETLGNTD---------VRRSVDVYMVTAGEGTMMAG 343

Query: 366 EKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            K+  +L +   G  V     G     QF  AD +G  + +++G   V+   V +K    
Sbjct: 344 MKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLAG 403

Query: 424 GIREDMSLEEVINYASHR 441
           G +  ++  EV    +H 
Sbjct: 404 GEQNTVAQAEVAKLLAHL 421


>gi|315926699|gb|EFV06078.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 411

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-AKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|170691961|ref|ZP_02883125.1| seryl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170143245|gb|EDT11409.1| seryl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 431

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+  +      G    +  GQ A     +   + +    + G  E+
Sbjct: 133 DFEVKDHVDVGAPLGLDFETGAKLSGARFTMLRGQIARLHRALAQFMIDTHTQQHGYTEI 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + ++   +G+   +  +M R+     +         T E  +T+  R  I    
Sbjct: 193 YTPYIVNPEILYGTGQLPKFADDMFRVEKGGGENTVTQYLISTSEISLTNTVRDSIVEGN 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +       PE S  +  +M     
Sbjct: 253 ALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVA-PETSYDALEQMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 TILQKLELPYRVITLCTGDMGFSATKTYDLEVWLPAQNTYREISSCSNTESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           + +      +V 
Sbjct: 372 YRNAQGKPELVH 383


>gi|121613220|ref|YP_001000100.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005058|ref|ZP_02270816.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|166228636|sp|A1VYA9|SYS_CAMJJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|87250089|gb|EAQ73047.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 411

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-TKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|86153826|ref|ZP_01072029.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842787|gb|EAQ59999.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 411

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-AKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|119357562|ref|YP_912206.1| seryl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|166228638|sp|A1BHA5|SYS_CHLPD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|119354911|gb|ABL65782.1| seryl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 431

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 13/213 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   ++  G +    +   + +   +  G  E+  P   + +    +G++  +  ++ 
Sbjct: 164 GAGFPVYIGKGARLERALINFMLDYHTDHHGFTEVFPPFFVNQESLRGTGQWPKFADQVY 223

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            + + N   +   PT E  +T++ R+ +     LP ++      FR E     +   G +
Sbjct: 224 HIEEDN---LYAIPTAEVPVTNLHRNEMIDAERLPVSYVAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +   F   PE S     K+ +S   I   L +    +   SG I  + +   
Sbjct: 281 RVHQFNKVEMVKF-TRPEESYQELEKILMSAEAILQALMIPYRVLLLCSGDISANATKCY 339

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             E    A+    +     +F D+     N  F
Sbjct: 340 DIEVWSPAEEKYLEASSCSNFEDYQARRMNIRF 372


>gi|329735738|gb|EGG72019.1| serine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 428

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPELFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S  +  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRI-VQPEDSWDALEEMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|319896555|ref|YP_004134748.1| seryl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317432057|emb|CBY80406.1| Seryl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 429

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA + ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALQGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|283456448|ref|YP_003361012.1| glycyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283103082|gb|ADB10188.1| GlyS Glycyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 438

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 137/422 (32%), Gaps = 68/422 (16%)

Query: 69  MSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           +    +    +WV SG    +     E L    R+    +     E+    +  + +K  
Sbjct: 11  VDTSIILPPAVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGDKLPENGLKD- 69

Query: 126 RNLPFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLR 183
                       +    E R    ++R+    ++D  S   L PE ++  +         
Sbjct: 70  ----IVCPDCGTRGNWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIF--------- 116

Query: 184 IFHRLGLKSIPMRAESGP------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               +  K++   + S P      +G    +E         T+ F   +   F  P  + 
Sbjct: 117 ----VDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEMEFFVAPGTDE 172

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG------ 291
           ++                    +  H E   + L    +   R +++ + F F       
Sbjct: 173 EWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSK---RTVDIEYKFGFQGSDWGE 229

Query: 292 -------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                  T + L   A   G D        G+ +   +     G  R + A +  ++D  
Sbjct: 230 LEGVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMAFLVDAYDVD 289

Query: 337 G-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                         +     +AP K +++ +    ++     + +   L +    + +D+
Sbjct: 290 EAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQNLADDLRQHDWMIDYDE 348

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G  IG ++   D +G PL V V    + D  V I+ R T  +E ++L++V +Y + R  
Sbjct: 349 AGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQERVALDKVADYVAARIG 407

Query: 444 NN 445
             
Sbjct: 408 EK 409


>gi|149194939|ref|ZP_01872032.1| seryl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134860|gb|EDM23343.1| seryl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 415

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +     +     G  E+ VP + + +    +G+   + +++ ++     + +   PT 
Sbjct: 176 RALINFFLDHNREYGFEEVWVPVIVNKETMTGTGQLPKFEEDLFKI---EKEGLYLIPTA 232

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T++FR  I    + P         FR E     +   G++R  +F   +  +    
Sbjct: 233 EVPLTNLFRDEIIENLDTPIKLTSYTPCFRKEAGSYGKDTKGIIRQHQFDKVELVAI-TK 291

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVF 222
           PE S   + +M         +L L    +   +G +G   +     E  + +     ++ 
Sbjct: 292 PEDSDKVFEEMVECASSALEKLELPYRQVMLCTGDLGFSAAKTIDLEVWIPSQNKYREIS 351

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIV 249
              +  DF        + D      + 
Sbjct: 352 SISNTRDFQARRAKIRYKDGKKNKLVH 378


>gi|321441305|gb|ADW85067.1| glu- + pro-tRNA synthetase [Ethmia eupostica]
          Length = 134

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   D ++  +V   S+GI   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPDTQEKAFVYQNSWGIT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++          +        C+++   L   G     D       
Sbjct: 74  GLVLPPRVAEIQVVVVPCGITASSTAEERKSLIDSCKQLVDNLLDGGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|217316875|gb|ACK37843.1| putative glutamyl-prolyl tRNA synthetase [Lomis hirta]
          Length = 134

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  +     Y    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVFEDPETNXKKYCYQNSWGLT-TRTIGVMVMVHGDDK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P   A  ++ ++ +               + C+ + + LS     V  D   
Sbjct: 74  GLVLPPRAASLQVVIMPVGITAKSSEQEKNKLIEECKILESDLSSHDVRVRCDIRD 129


>gi|127512948|ref|YP_001094145.1| seryl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166223287|sp|A3QEI8|SYS_SHELP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|126638243|gb|ABO23886.1| seryl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 428

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 19/232 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIE 68
           D ++  H  +     G+  + +    G    +  GQ A     +   + +      G  E
Sbjct: 133 DFDVKDHVDLGEQHAGLDFKSAVKITGSRFIVMKGQIARMHRALTQFMLDLHTTEHGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             VP L + D  + +G+   +G+++          + +   PT E  +T++ R  I    
Sbjct: 193 TYVPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLARDTIIDED 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +     + PE S  +   +     
Sbjct: 253 ELPIKMTAHTACFRSEAGSYGRDTRGLIRQHQFDKVELVQL-VKPEDSMAALESLTQHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            +  RLGL    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 312 TVLQRLGLPYRTVVLCTGDMGFGAAKTFDIEVWLPAQNTYREISSCSNMQDF 363


>gi|17231468|ref|NP_488016.1| seryl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|30173193|sp|Q8YQ59|SYS_ANASP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|17133110|dbj|BAB75675.1| seryl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 426

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G IE+S P L + D    +G+   + +E  + AD     + 
Sbjct: 175 GAALERALINFMLKMQTAAGYIEVSPPLLVNTDSLTGTGQLPKFAEESFKCAD---DELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  NLP         FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILAAENLPIYHCAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S     K+  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 292 KV-VHPSTSFDELEKLVGNAEAILQALKLPYRVINLCTGDLGFGATKTYDLEVWLPSSGK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     +  F +
Sbjct: 351 YREISSCSNCFDFQARRADIRFKE 374


>gi|313683011|ref|YP_004060749.1| seryl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313155871|gb|ADR34549.1| seryl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 414

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 63/163 (38%), Gaps = 8/163 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G +    +   + +     G  E SVP L +      +G+   +  ++ ++    ++ +
Sbjct: 169 MGARLERALINFMLDFNRERGFEEYSVPMLVNRRALEGTGQLPKFEDDLFKV---EEEEL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++F+  I +  +LP         FR E     R   G++R  +F   + 
Sbjct: 226 YLIPTAEVPLTNLFQDEILNGTDLPIKMTGYTSCFRKEAGSGGRDVRGMIRQHQFHKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +     + S   +  M      +   LGL    +   +G +G
Sbjct: 286 VAI-TRADQSDAVFEDMVACASDLLAALGLPHRLVTLCTGDLG 327


>gi|269214206|ref|ZP_05986067.2| serine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269210393|gb|EEZ76848.1| serine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 441

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +      G  E 
Sbjct: 145 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLEHGYTEH 204

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + +      +G+   + +++  +    D +  A    PT E  +T+     I  + 
Sbjct: 205 YTPYIVNGGTLYGTGQLPKFAEDLFHVTRGGDESKTAQYLIPTAEVTLTNTVAGSIIPFE 264

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 265 QLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYGALEEMVGHAE 323

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 324 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 383

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 384 FKDENGKNRLVH 395


>gi|225620534|ref|YP_002721791.1| seryl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|254783009|sp|C0R1U9|SYS_BRAHW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225215353|gb|ACN84087.1| seryl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 426

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G      +   + ++     G  E   P L +      +G+   + +++ +  D  D A
Sbjct: 170 KGAALERALINFMLKKHTSEHGYTEYVPPILVNGRTMTGTGQLPKFEEDLFKTTD--DPA 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+I+R  I     LP         FR E     R   G++R  +F   +
Sbjct: 228 LYLIPTAEVPLTNIYREEIIPENMLPLYCTAYTPCFRSEAGSYGRDMRGLIRQHQFDKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   + SK  + KM      I   L L    +   SG IG         E  + + 
Sbjct: 288 LVKICA-ADKSKEEHEKMLKDAESILQALELPYRVVVLSSGDIGNAAYKTFDIEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++    +  D+
Sbjct: 347 NMYREISSVSNCWDY 361


>gi|212550514|ref|YP_002308831.1| glycyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548752|dbj|BAG83420.1| glycyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 515

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 119/367 (32%), Gaps = 75/367 (20%)

Query: 93  MLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M         D   +  +   T + +  +           +PF   QI   FR+E+  R 
Sbjct: 198 MFSTKIGSTADAKMEIYLRPETAQGIFANFLNVQKSGRMKIPFGIAQIGKAFRNEIVTRQ 257

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P      + +     ++    LGL                +
Sbjct: 258 FIFRMREFEQMEMQ-FFVRPGEEFQWFERWKQIRMKWHKALGL---------------GN 301

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H++             +   ++F +P                      +     +H+   
Sbjct: 302 HKYRFHDHNRLAHYANAATDIEFEMP--------------------FGFKEVEGIHSRTD 341

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVA 326
           FD     K    +                     F   +  K +   +    IG  R+  
Sbjct: 342 FDLNNHEKYSGKK-------------------IRFFDPNINKSYVPYVIETSIGLDRIFL 382

Query: 327 AVIESSHDGKGII----------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +++  S+  K I+           P ++AP K++++ +   D    +   +I  +L KV 
Sbjct: 383 SILAGSY-CKEILKGKDSRVVLKLPPALAPVKLAILPLVRKD-GFPEKAREIMDQL-KVS 439

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +D+  + IG ++   D +G P    +    +   ++ I+ R T  +E +S++ +  
Sbjct: 440 FRCQYDE-KDSIGKRYRRQDAIGTPYCATIDQNTLDHDQLTIRSRDTMEQEHISIDWLQK 498

Query: 437 YASHRFS 443
             + + +
Sbjct: 499 VIADKVN 505


>gi|219116973|ref|XP_002179281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409172|gb|EEC49104.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 702

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 128/393 (32%), Gaps = 76/393 (19%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +PF   QI L FR+E+ PR G++R REF M +   F    + S  ++  +    L +F R
Sbjct: 267 MPFAAAQIGLGFRNEIAPRSGLLRVREFCMGEIEHFVNPKDKSHPNFKSVTDKELVLFGR 326

Query: 188 ---LGLKSIPMRA-----ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF--PIPSENT 237
              LG       A     ESG I  +    F+        ++      + F   + +E  
Sbjct: 327 DDQLGSGKTKTIACGEAVESGLINNETLAYFMARTQLYMEKIGMDPQRLRFRQHLATEMA 386

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------- 283
            +        I   +                +      + S    +              
Sbjct: 387 HYAADCWDLEIKSSYGWQECVGHADRACYDLEVHSRATKTSMVATQKVDPPQEMEVAKLK 446

Query: 284 -----VGHIFYFGTKYSLPM-------------SATFKGADGK----------------- 308
                +G  F    +    M              AT    DGK                 
Sbjct: 447 FDRKLLGQAFKGDQRVVSGMLESLAESWTDFEPIATKLENDGKTTVEGFEITKEMMTWTK 506

Query: 309 -DHYVQMGSYGIGAM-------RVVAAVIESSHDGKG-------IIWPDSVAPFKISLIN 353
               V    +    +       R++ +++E S   +        + +   VAP K +++ 
Sbjct: 507 QKKTVHEIKFTPSVIEPSFGMGRILYSLLEHSFYQRESDEQRVVMRFTPQVAPEKCAVLP 566

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I ++ + C +  + I   L         D     IG +++ +D LG P  V V    ++D
Sbjct: 567 ISSNPE-CNEIVDDIARDLMDSDLATRVDKSTAAIGRRYSRSDELGIPFAVTVDFDTLND 625

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             V ++ R + ++  +   + INY   +  ++R
Sbjct: 626 GTVTLRERDSTVQVRLPKND-INYLLFQIVHSR 657


>gi|58426333|gb|AAW75370.1| seryl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 466

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 32/215 (14%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------A 97
            +    +   + +      G  E +VP L +AD    +G+   +  ++ R+         
Sbjct: 188 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFRIYENEYEGHT 247

Query: 98  DRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           D                D A    PT E  +T+I R  I     LP       + FR E 
Sbjct: 248 DEETGESFYTPTGGVDPDPAYYLIPTSEVPLTNIVRDEIIDAERLPLRMTAHSMCFRAEA 307

Query: 144 ----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
               R   G++R  +F   +  +    PE S   + +M      +  +LGL    +   +
Sbjct: 308 GSGGRDTRGMIRQHQFEKVELVTACA-PEDSDAEHQRMTRCAEVVLEQLGLPYRKVLLCT 366

Query: 200 GPIGGD----LSHEFIVLADTGETQVFCSKDFMDF 230
           G +G         E  + +     ++    +  DF
Sbjct: 367 GDMGFSAIKTYDLEVWLPSQNTYREISSCSNCGDF 401


>gi|329724156|gb|EGG60674.1| serine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 428

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPELFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S  +  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRI-VQPEDSWDALEEMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|308049679|ref|YP_003913245.1| seryl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307631869|gb|ADN76171.1| seryl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 429

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 20/233 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     +   + +      G  E
Sbjct: 133 DFEIKDHVDLGEAMNGIDFAMAAKLSGSRFVVMRGQVARMHRALAQFMLDLHTTEHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           M VP L + D    +G+   +G+++     L++ +D+ +   PT E  +T+  R  I   
Sbjct: 193 MYVPYLVNPDSLFGTGQLPKFGEDLFHTQPLSEDSDRKLSLIPTAEVPLTNFARDEILDE 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            +LP         FR E     R   G++R  +F   +     + PE S  +  ++    
Sbjct: 253 ADLPVRMTAHTPCFRSEAGSSGRDTRGLIRQHQFDKVELVQL-VKPEDSMAALEELTGHA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            ++   LGL    +   +G +G   +     E  V +     ++    +  DF
Sbjct: 312 EKVLQLLGLPYRRVVLCTGDMGFGATKTYDLEVWVPSQNKYREISSCSNVGDF 364


>gi|86151194|ref|ZP_01069409.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315123949|ref|YP_004065953.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841541|gb|EAQ58788.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017671|gb|ADT65764.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 411

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-TKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|169335836|ref|ZP_02863029.1| hypothetical protein ANASTE_02262 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258574|gb|EDS72540.1| hypothetical protein ANASTE_02262 [Anaerofustis stercorihominis DSM
           17244]
          Length = 424

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 123/428 (28%), Gaps = 38/428 (8%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
             KG    LP   KA + V   I+E  +     ++ VP  +   L+        D   KE
Sbjct: 7   APKGTRDILPKEVKAWEMVEGKIKEICSAFNYKQIRVPDFEHYALFDRGVGESTDIVSKE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M  L  R        P     +   F  H  +    P   Y I   FR E RP+ G  R 
Sbjct: 67  MYTLNHRGSDVFALKPEGTSSVIRAFIEHGMTSGITPTKLYYITSCFRSE-RPQKG--RQ 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F      +              +  +        GL+             D       
Sbjct: 124 RQFHQFGIEAIGSYSASMDAEVIMLVDTLFSELKIKGLELRINSVGCPKCRSDYYERLKN 183

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV--EQWTAPYAATSDVHNEKLFDS 270
             +  + ++           P    D  +      +                H E + + 
Sbjct: 184 FVEPFKNELCEDCQDRLSKNPMRILDCKNEHCKTLLKEAPLMVDYLCEDCKEHFESVKEY 243

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK---------DHYVQMGS----- 316
           L           ++     + T+ +    +T  G+ G             +  GS     
Sbjct: 244 LNSAGIDFVVDPKIVRGLDYYTQTAFEFVSTDLGSQGTVCGGGRYNGLVKMIGGSDTPGV 303

Query: 317 -YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            +G+G  R++  +I      +G++         I L  +            K +  L+K 
Sbjct: 304 GFGLGLERLM--LIME---EQGLLNDMEEDGIDIYLAPVGKD---ALKIAFKSFRELTKK 355

Query: 376 GCDVFWD--DMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G     D  D   +   ++A             I+G   ++     +++  T  +E++ +
Sbjct: 356 GIKSGIDVMDRSLKAQMKYAN----KVNTKYTAILGEDELNKGVYTVRNMGTKEQEEIKI 411

Query: 432 EEVINYAS 439
           E +  Y  
Sbjct: 412 ENLTEYIK 419


>gi|157813062|gb|ABV81276.1| putative bifunctional aminoacyl-tRNA synthetase [Mastigoproctus
           giganteus]
          Length = 134

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+ G   + G  +S      ++  +  +  YV   S+G+   R +  ++    D  
Sbjct: 15  SGRAIQGGTSHHLGQNFSKMFEIVYEDPETSEKKYVYQNSWGLT-TRTIGVMVMVHGDNI 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++             +   ++C +    L   G  V  D       
Sbjct: 74  GLVLPPQVASVQVIIVPCGITANLNEKEKEKLLNSCVEFETVLGNAGIKVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|115351800|ref|YP_773639.1| histidyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|170702838|ref|ZP_02893687.1| histidyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|172060771|ref|YP_001808423.1| histidyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|122323093|sp|Q0BEW8|SYH_BURCM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558658|sp|B1YR43|SYH_BURA4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|115281788|gb|ABI87305.1| histidyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|170132256|gb|EDT00735.1| histidyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|171993288|gb|ACB64207.1| histidyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 446

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 138/442 (31%), Gaps = 59/442 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRASIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +       +      M     R++  LGL  I +          RA      
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F  + D  E             + ++N    +I      +  +    +      
Sbjct: 188 IKYLEQFADVLD--EDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFEG 245

Query: 264 NEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHY 311
            ++L  +     +      RG++     +F       G + ++     +           
Sbjct: 246 LQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKP 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIY 369
                + +G  R    ++E   +         +AP +  + +  +    +  R+      
Sbjct: 306 TAACGWAMGIER----ILELLKEED-------LAPEQEGVDVYVVHQG-ETAREQAFIAA 353

Query: 370 ARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
            RL   G DV +    D       SQ   AD  G    VI G + V++  V +K  R  G
Sbjct: 354 ERLRDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAG 413

Query: 425 I------REDMSLEEVINYASH 440
                  ++ + +E +  +  +
Sbjct: 414 EEGEKNVQQTVPVESLTEFLIN 435


>gi|327394802|dbj|BAK12224.1| histidyl-tRNA synthetase HisS [Pantoea ananatis AJ13355]
          Length = 414

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 119/412 (28%), Gaps = 39/412 (9%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADR 99
           +LP        V  +++      G  E+ +P ++   L+  + G   D   KEM    DR
Sbjct: 4   FLPADTAIWQRVEDVLKSVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFDDR 63

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N +++   P            H   Y       + +   FR E RP+ G  R R+F    
Sbjct: 64  NGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYMGPMFRYE-RPQKG--RYRQFHQIG 119

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
              F L           M  +  R +  LG+    +R E   IG          A+  + 
Sbjct: 120 VEVFGLQGPDIDAELI-MLNA--RWWKALGIAD-HVRLELNSIGSPE-----ARANYRDA 170

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            V   +   +                    +                  D          
Sbjct: 171 LVAFLEQHKEALDEDCKRRMYSNPMRVLDSKNPDIQTLLNDAPQLGDYLDVESREHFDGL 230

Query: 280 RGI--EVGHIFYFGTK-------YSLPMSATFKGADG-KDHYVQMGSYGIGAM----RVV 325
           R +  + G  +    +       Y+  +      + G +      G Y         R  
Sbjct: 231 RALLDDAGIAYTVNQRLVRGLDYYNRTVIEWVTDSLGSQGTVCGGGRYDGLVEQLGGRAT 290

Query: 326 AAVIESSHDGKGIIWPDSVAP-------FKISLINIKAH-DQVCRDACEKIYARLSKVGC 377
             V  +    + ++   +V P         + +I              EK+   L ++  
Sbjct: 291 PGVGFAMGMERLVLLVQAVNPEFEPARNVDVYVIASGQGVQSAAMQLAEKLRDHLPEMKL 350

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
              +     +   QFA AD  G  + +++G       +V IK    G ++ +
Sbjct: 351 MTNFGGGNFK--KQFARADKWGARVALVLGEDEQKAGQVVIKDLRNGEQQTL 400


>gi|320161762|ref|YP_004174987.1| seryl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319995616|dbj|BAJ64387.1| seryl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 424

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 10/176 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    + A + +   R G  E  +P +   D    SG+   +   +       ++ + 
Sbjct: 169 GARLQRALIAWMLDLHIRQGYREAYLPFMVKGDTLYASGQLPKFRDNLY---HDIEEDLW 225

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T +    +   + LP  +      FR E     R   G+ R  +F   + Y
Sbjct: 226 MVPTAEVPLTGLHMGEVLDEKQLPLRYTAYTPCFRREKMSAGRDVRGIKRGHQFDKVEMY 285

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLAD 215
            +   PE S     KM     +    LGL    ++  +G    G  ++++  V A 
Sbjct: 286 IYS-KPEDSMKELQKMLADAEQTCAELGLAYRVVQLCTGDLGFGAAITYDLEVWAP 340


>gi|301168770|emb|CBW28361.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Haemophilus influenzae 10810]
          Length = 429

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA + ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALQGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|307728953|ref|YP_003906177.1| seryl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307583488|gb|ADN56886.1| seryl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 431

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+  +      G    +  GQ A     +   + +    + G  E+
Sbjct: 133 DFEVKDHVDVGAPLGLDFETGAKLSGARFTMLRGQIARLHRALAQFMIDTHTQQHGYTEI 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + ++   +G+   +  +M R+     +         T E  +T+  R  I    
Sbjct: 193 YTPYIVNPEILYGTGQLPKFADDMFRVEKGGGENTVTQYLISTSEISLTNTVRESIVEGN 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +       PE S  +  +M     
Sbjct: 253 ALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVA-PETSYDALEQMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 TILQKLELPYRVITLCTGDMGFSATKTYDLEVWLPAQNTYREISSCSNTESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           + +      +V 
Sbjct: 372 YRNAQGKPELVH 383


>gi|256384437|gb|ACU79007.1| histidine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385270|gb|ACU79839.1| histidine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455715|gb|ADH21950.1| histidine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 414

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 141/430 (32%), Gaps = 42/430 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G   +     K  + V   ++E  ++    E+  P  +S +L++ S G   D   K
Sbjct: 3   QKPRGTQDFFLDEAKLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGSTTDIVSK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRN--LPFTFYQIQLKFRDELRPRF 147
           EM    D+ +++++  P   E    + R+ I++  Y+   LP   Y I   FR E RP+ 
Sbjct: 63  EMYEFVDKKNRSLVLKP---EGTASVVRAVIENKLYKEENLPLKVYYISPMFRYE-RPQN 118

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F       F       +  Y  +     +I ++  L        +  I G   
Sbjct: 119 G--RYRQFHQLGIEVFGSD--SIQQDYE-VLNIATKIINQFKLNENIKIYTNFLITGKNR 173

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            ++I+      +      D       +     D  I         +        +  E+ 
Sbjct: 174 EDYILELKKYLSDFKLCNDCNTRLEKNPLRVLDCKIDDKQFKNVPS----MQDFLTKEQK 229

Query: 268 FDSLPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                  +      I V H      G  Y         +   + +   +  G Y      
Sbjct: 230 TRYDQTLELFKKTNISVIHDDKLVRGLDYYTGFIFEIKYLNNNNEQTIIAGGRYNNLVNE 289

Query: 324 VVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           +    + +   G G+  + + +     SL+N K +  +     + +   L++       D
Sbjct: 290 IGNINLAACGFGMGLERFINIIKEQNSSLVNQKTNIDLYTICIDDLAIELNQQ----ILD 345

Query: 383 DMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                IG +                AD L     +I+GS     ++  IK ++   +   
Sbjct: 346 LTR-SIGLKADSNYYHLSLKSALKKADKLNPKYVIILGSNEAKTNEFIIKDQINKTQIKT 404

Query: 430 SLEEVINYAS 439
           +L + I Y  
Sbjct: 405 TLTKFIKYLK 414


>gi|46206189|ref|ZP_00047605.2| COG0423: Glycyl-tRNA synthetase (class II) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 322

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 107/366 (29%), Gaps = 81/366 (22%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + D +    +   T + +  +       S +  PF   QI   FR+E+ P   + R+RE
Sbjct: 9   PVEDESGLHYLRPETAQGIFVNFANVMGASRKKPPFGIGQIGKSFRNEITPGNFIFRTRE 68

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F                                       G D         
Sbjct: 69  FEQMEMEFFVEP------------------------------------GTDAEW------ 86

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                Q +       +       D   +           +      +           E 
Sbjct: 87  ----HQYWIDTRTDWYVDLGIQRDNLRLYEHPQEKLSHYSTRTVDIEYRFGFSGSEWGEL 142

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVA 326
           + ++ R           T + L   A   G D         +     +     G  R + 
Sbjct: 143 EGIANR-----------TDFDLKTHAEHSGKDLSYFDQTKNERWVPYVIEPAAGLTRSLM 191

Query: 327 AVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           A +  ++                 +     +AP K +++ + + ++      + +   L 
Sbjct: 192 AFLVEAYTEDEAPNAKGGVDTRTVLRLDHRLAPVKAAVLPL-SRNEQLSPKAKDLATELR 250

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K   +V +DD G  IG ++   D +G P  + V    + D  V I+HR +  +E ++L++
Sbjct: 251 KYW-NVDFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLDDQAVTIRHRDSMSQERVALDK 308

Query: 434 VINYAS 439
           V  Y +
Sbjct: 309 VTEYLA 314


>gi|319937181|ref|ZP_08011588.1| histidyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319807547|gb|EFW04140.1| histidyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 426

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 127/442 (28%), Gaps = 51/442 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +   +G    L         +  ++R         EM  P  +  +L+  +     D 
Sbjct: 1   MAYSAPRGTVDILSDNSGQWQQLEQLLRTICANYNVKEMRTPIFEHTELFTRAVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  ++M   P     +      + + +       +Y +   FR E RP+ 
Sbjct: 61  VTKEMYTFEDKKGRSMTLRPEGTAGIARSYVENKLYALPEKLQKYYYMGPMFRYE-RPQS 119

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G  R R+F         L  E        M ++   +   LGL+ I +   S  +G + S
Sbjct: 120 G--RQRQFHQFGVEMIGL--ESPYVDVEAMVLAVT-VVEALGLQDITLHINS--LGDEES 172

Query: 208 HEFIVLADTGETQVFCSKDFMDF---PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +    A     +        D       +     D  +                   + 
Sbjct: 173 RDAYREALKKHFEPVIKDLCYDCQQRYEKNPLRILDCKVDREHPFMNDAPHTIDYLSENA 232

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS-------- 316
           +  FD + E          +      G  Y           D K                
Sbjct: 233 KAHFDKVCELLDDLEIEYVIDTNLVRGLDYYSHTVFEVISDDPKLGAGATVGGGGRYNTL 292

Query: 317 -------------YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                        +  G  R++ A  +   +  G+          + ++ +       +D
Sbjct: 293 ISELGGPDVPGVGFAFGMERLLIANSDVDAEEDGL---------DVYVMPLGN---EAKD 340

Query: 364 ACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              +I   L   G     D  D G +   QF  AD       +I+G + V    V +K  
Sbjct: 341 LAMQIVTMLRANGFTCDMDQCDRGLK--GQFKSADRFHAHFSMIIGEEEVKKEVVNMKCN 398

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  + ++ LE ++ +    + 
Sbjct: 399 HSKEQNEVLLENIVAFIEAHYE 420


>gi|290960578|ref|YP_003491760.1| glycyl-tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260650104|emb|CBG73220.1| glycyl-tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 460

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 146/448 (32%), Gaps = 68/448 (15%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++      L 
Sbjct: 33  WDYGPLGVELKENIKRQWWRYMVTSREDVVGIDSSVILAPEVWVASGHVATFSD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL--KFRDELRPRFGVMRSR-E 154
           +       +   H E   +  +  +     +           +F  E +   G++ +   
Sbjct: 90  ECTSCHKRFRADHLEEAYEAKKGRLPENGLVDINCPNCGTKGQF-TEPKQFSGLLSTHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LGLKSIPMRAESGPIGGDLSHEFI 211
                     L PE ++  +   F        R    G+  +         G    +E  
Sbjct: 149 PTQDTGSVAYLRPETAQGIFTN-FAQVQTTSRRKPPFGIAQV---------GKSFRNEIT 198

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T+ F   +   F  P E+  + +       +++    Y           +   
Sbjct: 199 PGNFIFRTREFEQMEMEFFVKPGEDEKWQEYW-----MQERWNWYTGLGLREENMRWYDH 253

Query: 272 PENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GK 308
           P+ K    S R  ++ + F FG             T Y L   +   G D         +
Sbjct: 254 PKEKLSHYSKRTADIEYRFQFGGNEWGELEGVANRTDYDLNAHSKASGQDLSYYDQESSE 313

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIK 355
            +   +     G  R + A +  ++                 +     +AP K++++ + 
Sbjct: 314 RYTPYVIEPAAGVGRTLLAFLLDAYTEDEAPNAKGKLEKRAVLRLDHRIAPVKVAVLPLS 373

Query: 356 AHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            + +      + + A L +    D  +DD G  IG ++   D +G P  V V    + D+
Sbjct: 374 RNPE-LSPKAKGLAAALRQNWNID--FDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLDDN 429

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V ++ R +  +E +SL+++  Y + R 
Sbjct: 430 AVTVRERDSMKQERVSLDQIEGYLAGRL 457


>gi|160887863|ref|ZP_02068866.1| hypothetical protein BACUNI_00266 [Bacteroides uniformis ATCC 8492]
 gi|270295531|ref|ZP_06201732.1| glycyl-tRNA synthetase [Bacteroides sp. D20]
 gi|156862693|gb|EDO56124.1| hypothetical protein BACUNI_00266 [Bacteroides uniformis ATCC 8492]
 gi|270274778|gb|EFA20639.1| glycyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 513

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 70/484 (14%), Positives = 151/484 (31%), Gaps = 91/484 (18%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +  +G +  +N+     +         + +         +W  SG  D++      L
Sbjct: 33  VYDYGQMGVELKNNIKQYWWQSMVLLHENIVGIDSAIFMHPTIWKASGHVDAFND---PL 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-----LKFR----------- 140
            D  D    Y      +   + +   K  + +     +        +FR           
Sbjct: 90  IDNRDSKKRYRADV-LIEDQLAKYDDKINKEVAKAAKRFGEAFDEAQFRSTNGRVLEHQA 148

Query: 141 ------------------DELR-------------PRFGVMRSREFLMKDAYSFDLTPEG 169
                             DELR                     R+F +  +     T +G
Sbjct: 149 KRDALHERFSKALNDNNLDELRQIILDEEIVCPISGTKNWTEVRQFNLMFSTEMGSTADG 208

Query: 170 SKHSYNK------MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   Y +      +FV+YL +    R+ +     +     IG    +E +        + 
Sbjct: 209 AMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQ-----IGKAFRNEIVARQFIFRMRE 263

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL---------- 271
           F   +   F  P    D+        +       +      +++    +           
Sbjct: 264 FEQMEMQFFVKPGTELDWFKSWKATRLKWHKALGFGDDHYRYHDHDKLAHYANAATDIEF 323

Query: 272 -PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     GI     F      K+S      F     + +   +    IG  R+  ++
Sbjct: 324 LMPFGFKEVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPYVIETSIGVDRMFLSI 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           + +S+  + +           P ++AP K++++ +   D    +   +I   L K     
Sbjct: 384 MSASYCEETLDSGESRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNL-KFHFHC 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+  + IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  +
Sbjct: 442 QYDE-KDSIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIA 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|254225023|ref|ZP_04918637.1| histidyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125622410|gb|EAZ50730.1| histidyl-tRNA synthetase [Vibrio cholerae V51]
          Length = 422

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 149/439 (33%), Gaps = 54/439 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  +++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+ +  +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGI-AQHVRLELNSIGSLEARA 175

Query: 210 FIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A     + + +    D            + S+N D   I+     +  +    +  
Sbjct: 176 NYRTALIDYLEQYQNVLDEDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQ 235

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--------- 305
                 +L D+        +   RG++     +F + T+ SL    T  G          
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQ 294

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        + +G  R+V  ++E+  +             +   + +    +    A
Sbjct: 295 LGGKPTPAV--GFAMGLERLVL-MMETLGNTD---------VRRSVDVYMVTAGEGTMMA 342

Query: 365 CEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K+  +L +   G  V     G     QF  AD +G  + +++G   V+   V +K   
Sbjct: 343 GMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLA 402

Query: 423 TGIREDMSLEEVINYASHR 441
            G +  +   EV    +H 
Sbjct: 403 GGEQNTVVQAEVAKLLAHL 421


>gi|83746913|ref|ZP_00943960.1| Seryl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|207723628|ref|YP_002254026.1| seryl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|300703435|ref|YP_003745037.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Ralstonia solanacearum CFBP2957]
 gi|83726498|gb|EAP73629.1| Seryl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|206588831|emb|CAQ35793.1| seryl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|299071098|emb|CBJ42409.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Ralstonia solanacearum CFBP2957]
          Length = 438

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 21/224 (9%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------- 96
            +    +   + +      G  E  VP + +A     +G+   + +++ R+         
Sbjct: 169 ARLHRALAQFMLDTHTQEHGYTETYVPYIVNAASMRGTGQLPKFEEDLFRVPRKMGQAAE 228

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
             A  + +     PT E  +T++ R  I S   LP  F      FR E     +   G++
Sbjct: 229 GEAGEHVENFYLIPTAEVPLTNLVRDEIVSGDALPMKFAAHSPCFRSEAGSYGKDTRGMI 288

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +     + P+ S  + + M      I  +L L    +   +G +G   +   
Sbjct: 289 RQHQFDKVEMVQI-VHPDTSFEALDTMTHHAENILRKLELPFRTVVLCTGDMGFGSTKTY 347

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        F +      ++ 
Sbjct: 348 DIEVWIPAQNTYREISSCSNMGDFQARRMQARFRNAQGKPELLH 391


>gi|209885385|ref|YP_002289242.1| seryl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|229890229|sp|B6JFP3|SYS_OLICO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|209873581|gb|ACI93377.1| seryl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 439

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 93/292 (31%), Gaps = 61/292 (20%)

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSH 121
            G  E++ P L   D    + +   + ++       D   +     PT E  +T++ R  
Sbjct: 190 HGYTEVNPPLLVRDDAMFGTAQLPKFREDQFAAGSLDAEGQGYWLIPTAEVPLTNLVRES 249

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I   + LP     +   FR E     R   G++R  +F   +  S   TP+ S++ + +M
Sbjct: 250 ILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSI-TTPDESRNEHERM 308

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 +  RLGL    M   +G +G                  F S+   D  +     
Sbjct: 309 LSCAEEVLKRLGLHYRVMTLCTGDMG------------------FASQKTYDIEV----W 346

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I S             +       +  D                            
Sbjct: 347 MPGQISSQGEGGMYREISSCSVCGDFQARRMD---------------------------- 378

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
             A ++G D K H+V  +   G    R + AV+E+     G I  PD + P+
Sbjct: 379 --ARYRGPDNKPHFVHTLNGSGTAVGRALIAVMETYQQEDGSIAVPDVLQPY 428


>gi|315929261|gb|EFV08477.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305]
          Length = 411

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-TKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRSKIRYKNEQGKNELVH 374


>gi|283955812|ref|ZP_06373303.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792767|gb|EFC31545.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 411

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-TKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|189501797|ref|YP_001957514.1| glycyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497238|gb|ACE05785.1| hypothetical protein Aasi_0361 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 496

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 129/420 (30%), Gaps = 84/420 (20%)

Query: 46  GQKALDNVNAIIREE----QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA---- 97
            Q+ L+ + A+++ E     +     E  V  +     W E  R++     M        
Sbjct: 123 AQELLEKLQALLQAEELAGLHTLLLQEKIVCPISRTANWTEVHRFNL----MFATKVGAQ 178

Query: 98  DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           + N   +   P T + +  +       +   +PF   QI   FR+E+  R  + R REF 
Sbjct: 179 EENADTIYLRPETAQGIFVNFLNVQKTARMKVPFGIAQIGKAFRNEIVARQFIFRMREFE 238

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F                                       G +           
Sbjct: 239 QMEMQFFIQP------------------------------------GSEEKWFNYWQQAR 262

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +  +          I           +   I  Q+   Y     +H    FD L  ++ 
Sbjct: 263 WQWHIALGLTEEKLRIKPHAQLAHYAKAAVDIEYQFPFGYKEIEGIHARSDFD-LKNHEV 321

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH--- 333
            S + ++          +   ++  +           +    +G+ R++  ++  +    
Sbjct: 322 ASRKKLQY---------FDPELNQNYL--------PHVIETSLGSDRLILMLLCEAFTEE 364

Query: 334 ---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD-VFWDD 383
                        +    ++AP K ++  +   D       ++I+  L     D     +
Sbjct: 365 TITEEESAKTRTYLKLHPALAPIKAAIFPLVKKDN-LPQKAQEIFKSLK---YDFPLIYE 420

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + IG ++A  DL+G P  + +  + + D  V ++ R +  +E + +  + ++   + S
Sbjct: 421 ENQSIGKRYARQDLIGTPYCITIDHQTLEDDTVTLRERDSMQQERVHVNILRDFLLEKVS 480


>gi|321313681|ref|YP_004205968.1| seryl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320019955|gb|ADV94941.1| seryl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 425

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +     E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNMHRDEILSGDSLPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|317491441|ref|ZP_07949877.1| seryl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920988|gb|EFV42311.1| seryl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 430

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D ++  H  +     G+    +    G    +  GQ A     +   + +    + G +E
Sbjct: 133 DFDVRDHVTLGEMTGGLDFAAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEQHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +G ++       ++A        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHDTLYGTGQLPKFGGDLFHTRPLEEEADSSTYALIPTAEVPVTNLVRGEILE 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 253 EESLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VRPEDSMDALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   L L    +   +G +G   S     E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLNLPYRKVLLCTGDMGFGSSKTYDLEVWVPAQNTYREISSCSNMWDF 365


>gi|315186817|gb|EFU20575.1| histidyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 437

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 132/448 (29%), Gaps = 55/448 (12%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +  KG   +LP  +    ++   + E     G + +  P L+ A+ L  +SG    
Sbjct: 1   MIQPRVLKGFRDFLPDLEARKKSIVRTLEEVFTSFGYLPIDTPVLEYAEILLGKSG--GE 58

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             K++ R  D   + +                H  +   LPF  Y I   FR E   R  
Sbjct: 59  TEKQVYRFTDHGGRDVALRFDLTVPFARFMAQH-MAELYLPFRRYHIAKVFRGENTQR-- 115

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE---------- 198
             R REF+  D          +      + +   +    LG++   +             
Sbjct: 116 -GRYREFMQCDFDIVGPDSTSADLE---VLLIMQKALASLGMERFTIHLSHRGVLQDFLA 171

Query: 199 ----------------SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                              IG +   E   LA   + +          P          +
Sbjct: 172 RLEVSEPVEVLRTVDKIRKIGREKVRE--TLAQLSDEERAGRILDFIAPGSEPEEALSRM 229

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A       V  E              RG++      F T  S       
Sbjct: 230 EEGVGADNPHLARLKEIWAVIGELGLARFFTIDPSITRGLDYYTGVVFETFLSDLPDIGS 289

Query: 303 KGADGKDHYVQ-------MGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + G+   +        M   G    +  + A ++     + I    ++AP  + +   
Sbjct: 290 VCSGGRYDNLVGLYSAQSMSGVGASIGLDRLMAAMQELGMLEAI---PTMAPEVLVVC-- 344

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              ++        + A L   G          ++G QF+ A+  G P  +I+G   ++  
Sbjct: 345 --MEERFLAHYHGVAAALRARGVRTEVYPQARKLGQQFSYAEKKGIPFALIMGEDEIAAG 402

Query: 415 KVEIKHRLTGIREDM-SLEEVINYASHR 441
            + +K      +  +  LEEV++   HR
Sbjct: 403 AMALKDLAARTQRVVRGLEEVVHAVEHR 430


>gi|217973367|ref|YP_002358118.1| seryl-tRNA synthetase [Shewanella baltica OS223]
 gi|254783045|sp|B8EET7|SYS_SHEB2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|217498502|gb|ACK46695.1| seryl-tRNA synthetase [Shewanella baltica OS223]
          Length = 428

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           I  H  +     G+  +++    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 IKDHIDLGEGLNGLDFKNAVKITGSRFIVMKGQVARLNRAIGQFMLDLHTIEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VKPEDSMAALEALTGHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 315 QRLGLPYRTVILCTGDMGFGSSKTYDIEVWLPAQNTYREISSCSNMKDF 363


>gi|237730858|ref|ZP_04561339.1| seryl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226906397|gb|EEH92315.1| seryl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 430

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +    TG+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHTGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++      +++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDALPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMDALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|88603748|ref|YP_503926.1| seryl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|121721452|sp|Q2FS27|SYS_METHJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|88189210|gb|ABD42207.1| seryl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 425

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 12/225 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G Y            +     +     G   +  P + +   + E    D + K M +
Sbjct: 162 GAGFYFLKGNLVLLDLALQRFSLDILMEKGYTPIIPPYMINRKSYEEVTDLDDFEKVMYK 221

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
           + D +        T E  M  +++  I   ++LP     +   FR E+        G+ R
Sbjct: 222 IEDDD---AYLIATSEHPMAAMYQDEIFEEKDLPLRLAGLSPCFRREIGSHGLDTKGLFR 278

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   + + +   P+ S   + ++  +   IF +L +    +   +G IG   +    
Sbjct: 279 VHQFHKVEQFVYCH-PDDSWTIHEELRENAEEIFQKLEIPYRVVNICTGDIGTVAAKKYD 337

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            E  +  +    +V    +   +     N    D     S     
Sbjct: 338 IEAWMPRENEYREVVSCSNCTTYQAVRLNIRVRDKEDFESKQFVH 382


>gi|198275440|ref|ZP_03207971.1| hypothetical protein BACPLE_01604 [Bacteroides plebeius DSM 17135]
 gi|198271069|gb|EDY95339.1| hypothetical protein BACPLE_01604 [Bacteroides plebeius DSM 17135]
          Length = 513

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 63/484 (13%), Positives = 147/484 (30%), Gaps = 91/484 (18%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +   G +  +N+     +         + +         +W  SG  D++      L
Sbjct: 33  VYDYGQNGVELKNNIKQYWWQSMVLLHDNIVGIDSAIFMHPTIWKASGHVDAFND---PL 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE-------------- 142
            D  D    Y      +   I +   K  + +     +    F +E              
Sbjct: 90  IDNRDSKKRYRADV-LIEDQIAKYDEKINKEVAKAAKKYGEAFNEEEFRSTNARVLEHQA 148

Query: 143 ---------------------------------LRPRFGVMRSREFLMKDAYSFDLTPEG 169
                                            +         R+F +        T +G
Sbjct: 149 KRDALHERYSKAMNANDLAELRQIILDEEIVCPISGTKNWTEVRQFNLMFTTEMGSTADG 208

Query: 170 SKHSYNK------MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   Y +      +FV+YL +    R+ +     +     IG    +E +        + 
Sbjct: 209 AMKVYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQ-----IGKAFRNEIVARQFIFRMRE 263

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL---------- 271
           F   +   F  P    D+        +       +      +++    +           
Sbjct: 264 FEQMEMQFFVKPGTELDWFKKWKEIRLKWHKALGFGDDHYRYHDHEKLAHYANAATDIEF 323

Query: 272 -PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     GI     F      K+S      F     + +   +    IG  R+  +V
Sbjct: 324 LMPFGFKEVEGIHSRTNFDLSQHEKFSGKSIKYFDPEINESYTPYVIETSIGVDRMFLSV 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           + +++  + +           P ++AP K++++ +   D    +   +I   L K   + 
Sbjct: 384 MSAAYHEEKLENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIVNDL-KFHFNC 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+  + IG ++   D +G P  + +  + + D+ V +++R T  +E +++ ++ N  +
Sbjct: 442 QYDE-KDSIGKRYRRQDAIGTPYCITIDHQTLEDNCVTLRNRDTMEQERVAIADLNNIIA 500

Query: 440 HRFS 443
            + S
Sbjct: 501 DKVS 504


>gi|171463819|ref|YP_001797932.1| seryl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238689067|sp|B1XVE1|SYS_POLNS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|171193357|gb|ACB44318.1| seryl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 436

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 26/248 (10%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQNRTG-AIEM 69
           D E+  H  L    G+  + +    G    +  G   +    +   + +         E+
Sbjct: 133 DFEVKDHVDLGGPLGLDFEVAAKISGSRFIVLKGPIARLHRALAQFMIDTHATEHQYQEV 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL------ADRNDKA----MIYGPTHEEVMTDIFR 119
             P + +A     +G+   + +++ ++       D N +A        PT E  +T++ R
Sbjct: 193 YAPYMVNAASMRGTGQLPKFEEDLFKVPRQMGGEDGNGEAKTENFYLIPTAEVPVTNLVR 252

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I +  NLP  F      FR E     R   G++R  +F   +       PE S  +  
Sbjct: 253 DEIVNTDNLPMKFVAHTPCFRSEAGSYGRDVRGMIRQHQFDKVELVQI-TKPEDSMQALE 311

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFP 231
            +     RI   L L    +   +G +G   +     E  V +     ++       DF 
Sbjct: 312 DLTGHAERILELLELPYRKVLLCTGDMGFGSTKTYDLEVWVPSQNAYREISSCSSMGDFQ 371

Query: 232 IPSENTDF 239
                  F
Sbjct: 372 ARRMQARF 379


>gi|94676769|ref|YP_588488.1| histidyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219919|gb|ABF14078.1| histidyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 430

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 151/435 (34%), Gaps = 41/435 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP     L  +  ++++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMKDYLPKEMVFLQYLENLLKQVLVSYGYSEIRLPIVEQTLLFKRAIGEITDVVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D N   +   P            H   ++ L   ++ I   FR E RP+ G  R R+F
Sbjct: 70  FEDLNGDHLTLRPEGTAGCVRAGIEHSLFHQKLEQRWWYIGPMFRHE-RPQKG--RYRQF 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-------PMRAESGPIGGDLSH 208
               A  F             + +   R +  LG+              ++         
Sbjct: 127 YQLGAEVFGQHGPDIDAE---LIMLTARWWKVLGISEYVTLELNSIGSVDTRNRYCKALV 183

Query: 209 EFIVLADTGETQVFCSKDFMDFP--IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            F+V  +     ++    + +    + ++N    ++++   ++ ++    A        K
Sbjct: 184 TFLVQHERYLNNIYRRSIYTNPMRILDTKNIQIQELLNDAPVIAEYLDDNAHKHFSSICK 243

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-----DHYVQMGSYGIGA 321
           L D    N +++ R +  G  +Y  T +         G+ G       + + +   G  A
Sbjct: 244 LLDLTGINYKINTRLV-RGLDYYNYTVFEWT--TKHLGSQGTICAGGRYDLLVEQLGGKA 300

Query: 322 MRVVAAVIESSHDGKGIIWP-----DSVA----PFKISLINIKAHDQ-VCRDACEKIYAR 371
              + A I        ++        S++    P  I ++ +    Q       EKI+  
Sbjct: 301 TPAIGAAIGL----DRLVLLVQRLKPSLSLITLPIDIYIVAVGDATQSRAMLLAEKIHDA 356

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +  +     +     +   QF+ A+     L +I+G   +   +V IK   TG ++ ++ 
Sbjct: 357 IPSLRIVTNYGGGNFK--KQFSRANKYSASLTLIIGENEIVTQQVTIKDLSTGKQKTLAQ 414

Query: 432 EEVINYASHRFSNNR 446
            E+I Y    F   +
Sbjct: 415 NEIIAYLYSFFFKKK 429


>gi|304408763|ref|ZP_07390384.1| seryl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302766|ref|ZP_07582521.1| seryl-tRNA synthetase [Shewanella baltica BA175]
 gi|304352584|gb|EFM16981.1| seryl-tRNA synthetase [Shewanella baltica OS183]
 gi|306913126|gb|EFN43548.1| seryl-tRNA synthetase [Shewanella baltica BA175]
          Length = 428

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           I  H  +     G+  +++    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 IKDHIDLGEGLNGLDFKNAVKITGSRFIVMKGQVARLNRAIGQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VKPEDSMAALEALTGHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 315 QRLGLPYRTVILCTGDMGFGSSKTYDIEVWLPAQNTYREISSCSNMKDF 363


>gi|240949608|ref|ZP_04753943.1| seryl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240295866|gb|EER46542.1| seryl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 435

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 72/200 (36%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-------D 98
            +    ++  + +    + G +E +VP L + D    +G+   +G+++           +
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLFGTGQLPKFGEDLFHTQPLTGQDPN 230

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
              +     PT E  +T++ R  I     LP  +      FR E     R   G++R  +
Sbjct: 231 ETQRPFSLIPTAEVPVTNLVRDEIIDEETLPLRYTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +       PE S  +  ++     ++   L L    +   +G +G   +     E 
Sbjct: 291 FEKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSAKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|153000732|ref|YP_001366413.1| seryl-tRNA synthetase [Shewanella baltica OS185]
 gi|160875431|ref|YP_001554747.1| seryl-tRNA synthetase [Shewanella baltica OS195]
 gi|166223286|sp|A6WNG1|SYS_SHEB8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083585|sp|A9L269|SYS_SHEB9 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|151365350|gb|ABS08350.1| seryl-tRNA synthetase [Shewanella baltica OS185]
 gi|160860953|gb|ABX49487.1| seryl-tRNA synthetase [Shewanella baltica OS195]
 gi|315267621|gb|ADT94474.1| seryl-tRNA synthetase [Shewanella baltica OS678]
          Length = 428

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           I  H  +     G+  +++    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 IKDHIDLGEGLNGLDFKNAVKITGSRFIVMKGQVARLNRAIGQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VKPEDSMAALEALTGHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 315 QRLGLPYRTVILCTGDMGFGSSKTYDIEVWLPAQNTYREISSCSNMKDF 363


>gi|126174377|ref|YP_001050526.1| seryl-tRNA synthetase [Shewanella baltica OS155]
 gi|166223285|sp|A3D4J4|SYS_SHEB5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|125997582|gb|ABN61657.1| seryl-tRNA synthetase [Shewanella baltica OS155]
          Length = 428

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           I  H  +     G+  +++    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 IKDHIDLGEGLNGLDFKNAVKITGSRFIVMKGQVARLNRAIGQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VKPEDSMAALEALTGHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 315 QRLGLPYRTVILCTGDMGFGSSKTYDIEVWLPAQNTYREISSCSNMKDF 363


>gi|269139541|ref|YP_003296242.1| seryl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267985202|gb|ACY85031.1| seryl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304559430|gb|ADM42094.1| Seryl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 430

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D ++  H  +     G+    +    G    +  GQ A     +   + +    + G +E
Sbjct: 133 DFDVRDHVTLGEMADGLDFAAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEQHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +G ++       ++A        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHDTLYGTGQLPKFGADLFHTRPLEEEADSSTYALIPTAEVPVTNLVRGEILE 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 253 ESALPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VRPEDSMAALEELTAH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   L L    +   +G +G   S     E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLNLPYRKVLLCTGDMGFGSSKTYDLEVWVPAQNTYREISSCSNMWDF 365


>gi|148259967|ref|YP_001234094.1| seryl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|166200591|sp|A5FX43|SYS_ACICJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|146401648|gb|ABQ30175.1| seryl-tRNA synthetase [Acidiphilium cryptum JF-5]
          Length = 433

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 14/203 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   N  G  E+S P L +      +G+   + +++ R  D         PT
Sbjct: 181 RALGQFMLDLHVNEHGYTEVSPPLLVNDATMYGTGQLPKFAEDLFRTTD----GRWLIPT 236

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I    +LP     +   FR E     R   G++R  +F   +  S   
Sbjct: 237 AEVPLTNLAAGEILDAASLPLRMTALTPSFRSEAGSAGRDTRGMLRQHQFWKVELVSL-T 295

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
           TPE S   + +M      +  RLGL    M   +G  G   +     E  +       ++
Sbjct: 296 TPEASADEHERMTSCAESVLERLGLPYRRMLLCAGDTGFSSAKTYDLEVWLPGQGAYREI 355

Query: 222 FCSKDFMDFPIPSENTDFDDIIS 244
               +   F     N  +    +
Sbjct: 356 SSCSNCRAFQARRMNARYRPPQT 378


>gi|170722569|ref|YP_001750257.1| seryl-tRNA synthetase [Pseudomonas putida W619]
 gi|229890231|sp|B1JBE0|SYS_PSEPW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169760572|gb|ACA73888.1| seryl-tRNA synthetase [Pseudomonas putida W619]
          Length = 426

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A     +G+   + +++ ++    +    
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEHYTPYLVQAPALQGTGQLPKFEEDLFKITREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I   + LP         FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNLVAGEIIDAKQLPLKLVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  R+   L L    +   +G +G         E  V +   
Sbjct: 290 QV-VEPSKSMEALEGLTANAERVLQLLELPYRVLALCTGDMGFGAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|293363963|ref|ZP_06610699.1| serine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552453|gb|EFF41227.1| serine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 422

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 72/223 (32%), Gaps = 13/223 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G K +  +   + +     G  E+  P L    +   +G+   + +++  L  
Sbjct: 164 FVLYKNKGAKLVRALMNFMLDLHETKGYEEILPPVLVKDKMLFGTGQLPKFKEDLFFLES 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N   +   PT E  +T+I+   I      P  F      FR E     +   G++R+ +
Sbjct: 224 SN---LYLIPTAEVPLTNIYNDEIVDLSK-PLAFTAFTECFRSEAGSSGKDTRGIIRNHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL----SHEF 210
           F   +      + + +   Y KM      +  +L +    +   +G +G         E 
Sbjct: 280 FKKVELVKI-TSEQDAISEYEKMVEDAKDVLVKLEIPFRELLLCTGDLGFSARKTIDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            + ++    +V       DF        + D  +         
Sbjct: 339 WLPSEIKYREVSSISYMGDFQARRGMIRYRDQNNATQYAHTMN 381


>gi|284054154|ref|ZP_06384364.1| histidyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 392

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/409 (17%), Positives = 119/409 (29%), Gaps = 55/409 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G    LP        V ++  E   R    E+  P  +   L+    G   D  GKEM  
Sbjct: 9   GTRDILPEEVGYWQWVASVAEETLARGNYQEIRTPIFEPTALFERGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D+++   P     +   +              + +   FR E RP+ G  R R+F
Sbjct: 69  FCDRGDRSITLRPEGTAGVVRAYIERKLHANPGVQRLWYMGPMFRYE-RPQAG--RQRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------------- 199
                         +      + V    I   LG+ ++ +   S                
Sbjct: 126 HQLGVEVLGSDDPRADVEVIAVAV---DILKSLGITNLHLNLNSVGDRTDRQNYRQALVD 182

Query: 200 --GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
              P  G+L  +          ++  SKD     I        D +   S        Y 
Sbjct: 183 YLTPFSGELDQDSRDRLTRNPMRILDSKDERTQEITRNAPSILDYLGERSQSHFERVQYL 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG---ADG 307
                   K             RG++              G + ++     + G     G
Sbjct: 243 I-------KELGISYTLNPRLVRGLDYYTHTAFEIISDDLGAQATVCGGGRYDGLVQELG 295

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +G + IG  R++  +++  H       P  V P ++ L+   +  +        
Sbjct: 296 GPSVPAVG-WAIGLERLII-LLQQLHQ------PPQVTP-QLYLV---SRGEKAEANGLI 343

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  +L + G  V  D  G     QF  AD  G    +++G        V
Sbjct: 344 LAQKLRQAGLRVELDLSGSAFSKQFKRADRSGAGACLVLGDAEAIAGTV 392


>gi|283478928|emb|CAY74844.1| serS [Erwinia pyrifoliae DSM 12163]
          Length = 447

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 20  IASH-KLMLRT-GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H +L  R  G+    +    G    +  GQ AL    ++  + +    + G  E  V
Sbjct: 153 VRDHVELGERAAGLDFAAAVKLTGSRFIVMKGQIALMHRALSQFMLDLHTEQHGYQETYV 212

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRN 127
           P L +      +G+   +G+++      +++A        PT E  +T++ R  I    +
Sbjct: 213 PYLVNHASLYGTGQLPKFGEDLFHTRPLDEEASSSNYALIPTSEVPLTNLVRDEILEEES 272

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +       PE S  +  ++     +
Sbjct: 273 LPLKMTAHTPCFRSEAGAYGRDTRGLIRMHQFDKVEMVHV-TRPEDSMDALEELVGHAEK 331

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +   L L    +   +G +G         E  + A     ++    +  DF
Sbjct: 332 VLQLLNLPYRKVLLCTGDMGFGAQKTYDLEVWLPAQDTYREISSCSNMGDF 382


>gi|254413141|ref|ZP_05026913.1| seryl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196180305|gb|EDX75297.1| seryl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 427

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + + + + Q   G +E+  P L ++     +G+   + +E  +  D +D  + 
Sbjct: 176 GAALERALISFMLDRQIAAGYVEVIPPILINSRSLTATGQLPKFAEESFK-CDSDD--LW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I     LP         FR E     R   G++R  +F   +  
Sbjct: 233 LSPTAEVPLTNLYRDEILDASQLPIYHCAYTPCFRREAGSYGRDTKGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S+  + K+  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KI-VHPSTSEAEHEKLVENAAAILEALKLPYRVIELCTGDLGFSATKCYDLEVWLPSSGK 351

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 352 YREISSCSNCGDF 364


>gi|145639615|ref|ZP_01795219.1| seryl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145271406|gb|EDK11319.1| seryl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309750469|gb|ADO80453.1| Seryl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 429

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA + ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALQGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|332882901|ref|ZP_08450508.1| serine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679109|gb|EGJ52099.1| serine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 429

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 104/318 (32%), Gaps = 69/318 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  ++G  E+  PT+ +      +G+      +M  
Sbjct: 164 GAGFPVYRGKGARLQRALINFFLDEARKSGYEEIMPPTVVNEASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N       PT E  +T+I+R  I   ++LP         FR E     +   G+ R
Sbjct: 223 --HCNLDDFYLIPTAEVPVTNIYRDVILDEKDLPVKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE S+ S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSEQSHQEMLAHVEGLLQKLELPYRILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + SE                                    
Sbjct: 332 ----------FTSSICYDFEVYSEAQKRW------------------------------- 350

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATF-KGADGKDHYVQ-MGSYGIGAMRVVAAVI 329
                     +EV  +  F T  +  +   + +  D K      +    +   R+VAA++
Sbjct: 351 ----------LEVSSVSNFDTYQANRLKCRYRRTEDKKTELCHTLNGSALALPRIVAAIM 400

Query: 330 ESSHDGKGIIWPDSVAPF 347
           E++   +GI  P  + P+
Sbjct: 401 ENNQTPEGIRMPKCLVPY 418


>gi|326386512|ref|ZP_08208135.1| seryl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209173|gb|EGD59967.1| seryl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 426

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 77/240 (32%), Gaps = 23/240 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAI 67
            PR+       L    G+  +      G       GQ A     +   + + Q    G  
Sbjct: 137 TPREHADIGPAL----GLDFETGALISGARFTFLRGQMARLHRALAQFMLDFQTGTNGYT 192

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E + P +   +    +G+   + +++ R  D         PT E  +T+  R  I +   
Sbjct: 193 ECATPLMVRDEAVFGTGQLPKFAEDLFRTTD----GRWLIPTAEVSLTNSVREQILTDAA 248

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP     +   FR E     R   G +R  +F   +  S    PE S+  + +M  +   
Sbjct: 249 LPLRMTALTPCFRSEAGAAGRDTRGFIRQHQFEKVELVSI-TRPEDSEAEHERMTGAAQA 307

Query: 184 IFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +   L L    +    G +G         E  +       ++    +  DF     N  +
Sbjct: 308 VLEALDLPYRKVVLCEGDMGFTARKTYDLEVWLPGQNTYREISSCSNCGDFQARRMNARY 367


>gi|313667939|ref|YP_004048223.1| seryl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313005401|emb|CBN86835.1| seryl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 431

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +      G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLEHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + +      +G+   +G+++  +    D +  A    PT E  +T+     I    
Sbjct: 195 YTPYIVNGGTLYGTGQLPKFGEDLFHVTRGGDESKTAQYLIPTAEVTLTNTVAGSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYGALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|195378418|ref|XP_002047981.1| GJ13721 [Drosophila virilis]
 gi|194155139|gb|EDW70323.1| GJ13721 [Drosophila virilis]
          Length = 679

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 122/396 (30%), Gaps = 87/396 (21%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD----------------------- 164
           LPF   QI   FR+E+ PR G++R REF M +   F                        
Sbjct: 265 LPFAVAQIGNSFRNEISPRSGLIRVREFTMAEIEHFCDPSLKDHPKFAKVAGEKLTLYSA 324

Query: 165 ------------------LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                              +   +  +         +  H +G+K   +R     +G ++
Sbjct: 325 CNQMDGKSSQQSTIGEAVASQLVANETLGYYMARIQQFLHAIGIKPECLRF-RQHMGNEM 383

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD--------------------DIISLN 246
           +H      D    ++  S  +++    ++ + +D                          
Sbjct: 384 AHYACDCWD---AEILTSYGWVECVGCADRSAYDLSQHTAATGVRLVAEKRLPAPKTVEV 440

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP------MSA 300
           S +         T     + + D+L +      + +E         K +LP      + A
Sbjct: 441 SEIVPNKQALGKTFKKEAKAITDALAKLSLDDIKQVEAQLATGGPYKLTLPDGATHELGA 500

Query: 301 TFKGADGKDHYVQMGSYGIGAMR------VVAAVIESSH----DGKG----IIWPDSVAP 346
              G       V +  +    +        +   +        DG         P  VAP
Sbjct: 501 ETIGVKHATKTVHVEEFIPSVVEPSFGIGRIMYALLEHSFQCRDGDEQRCYFTLPPLVAP 560

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            K S++ +  + +  +   +++ A L+K       DD    IG ++A  D +  P  + V
Sbjct: 561 LKCSILPLSNNAE-FQPYTQQLSAALTKAELSHKVDDSSGSIGRRYARTDEIAIPYGITV 619

Query: 407 GSKFVSDS-KVEIKHRLTGIREDMSLEEVINYASHR 441
               + +   V ++ R T  +  + L+ V+      
Sbjct: 620 DFDTLKEPHTVTLRDRNTMKQVRIGLDVVVGVVKDL 655


>gi|149198613|ref|ZP_01875657.1| seryl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149138328|gb|EDM26737.1| seryl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 425

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 10/213 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G Y W   G +    +     ++    G  E  VP + +      +G+   + +E+  
Sbjct: 159 GSGFYLWKGAGARLERALINFFLDQNTENGYKEAWVPFVVNPKAMTGTGQLPKFAEEIYH 218

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
             + N   +   PT E  +T+I    I   + LP  +      FR E     +   G++R
Sbjct: 219 APEDN---LYLVPTAEVPVTNIHADEILDAKELPIAYTAYTPCFRREAGAAGKDSRGILR 275

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS--HE 209
             +F   +   F + P  S      +      +  +LGL    +   SG +G   +  ++
Sbjct: 276 VHQFSKVEMVKF-VEPSTSYTELEMLLADAEHLLQQLGLHYRVIELCSGDLGFSAARCYD 334

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             V A   E  +  S         S        
Sbjct: 335 IEVWAPGTERYLEVSSCSNFEDFQSRRCKIRYK 367


>gi|86149043|ref|ZP_01067275.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597260|ref|ZP_01100495.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926480|ref|ZP_01810163.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|218562047|ref|YP_002343826.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|30173219|sp|Q9PIB3|SYS_CAMJE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|85840401|gb|EAQ57658.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190321|gb|EAQ94295.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359753|emb|CAL34539.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|145844643|gb|EDK21749.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|284925660|gb|ADC28012.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 411

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-TKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|325273409|ref|ZP_08139664.1| seryl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324101454|gb|EGB99045.1| seryl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 426

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A     +G+   + +++ ++    +    
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEHYTPYLVQAPALQGTGQLPKFEEDLFKITREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I   + LP         FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNLVAGAILDAKQLPLKLVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  R+   L L    +   +G +G         E  V +   
Sbjct: 290 QV-VEPAKSMEALEGLTANAERVLQLLELPYRVLALCTGDMGFGAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|145637661|ref|ZP_01793315.1| seryl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145269121|gb|EDK09070.1| seryl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 429

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  + A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWLPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|153807618|ref|ZP_01960286.1| hypothetical protein BACCAC_01900 [Bacteroides caccae ATCC 43185]
 gi|149129980|gb|EDM21192.1| hypothetical protein BACCAC_01900 [Bacteroides caccae ATCC 43185]
          Length = 424

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 15/203 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G IE+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYIEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPI 202
               +  +L L    +R   G +
Sbjct: 308 HVEGLLQKLELPYRILRLCGGDM 330


>gi|120603778|ref|YP_968178.1| seryl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|166221435|sp|A1VH35|SYS_DESVV RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|120564007|gb|ABM29751.1| seryl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 424

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +     +    +     +      G  E+  P + +      +G+   + +++ RL   
Sbjct: 164 VYWKWAARLERALANYFLDTHISANGYTEVLPPFMVNRKTMTGTGQLPKFEEDLFRLESW 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T++    I    +LP  +      FR E     +   G++R  +F
Sbjct: 224 D---YFLIPTAEVPLTNLHADEILEEGDLPLGYTAQTPCFRSEAGSYGKDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F   PE S     +M      +   LGL    +   SG +G   +     E  
Sbjct: 281 TKVEMVRF-AHPERSFEELERMRGHAEALLQNLGLPYRVITLCSGDMGFSATKTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +       ++    +  DF     N  F            
Sbjct: 340 LPGQDKYREISSCSNCGDFQARRANIRFRPAGGGKPEFVH 379


>gi|330824025|ref|YP_004387328.1| histidyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329309397|gb|AEB83812.1| Histidyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 429

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 139/441 (31%), Gaps = 59/441 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      + +   +R    R     +  P ++   L+V   G   D   KEM 
Sbjct: 8   KGMNDILPPESARWEWLEDTVRTLMARYAYRNIRTPIVEPTPLFVRGLGEVTDIVEKEMY 67

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              DR N + +   P     +      H   Y +     Y +   FR E RP+ G  R R
Sbjct: 68  SFEDRLNGEQLTLRPEATAGVVRAVVEHSMLY-DGGKRLYYMGPMFRHE-RPQRG--RYR 123

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD-------- 205
           +F    A +       +      + +    ++  LGLK + +   S     +        
Sbjct: 124 QFHQIGAEALGFPGAEADAE---IILLAHALWAELGLKDVRLELNSLGQPDERRAHRAAL 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           ++H      +  E             + ++N     ++     +  +    +       +
Sbjct: 181 IAHLEQHQDELDEDARRRLHSNPLRILDTKNPAMQAVVEAAPRLIDFLGEASLKHFETVK 240

Query: 266 KLFDSLPENK---RVSARGIEVG--HIFYF-------------GTKYSLPMSATFKGADG 307
            + D+            RG++     +F F             G +Y        +   G
Sbjct: 241 AILDANGVAWSLNPRLVRGMDYYNLTVFEFVTDQLGSQGTICGGGRY----DYLIEQIGG 296

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K        + +G  RV+  + E           ++ AP  ++       D         
Sbjct: 297 KPAPAV--GWALGVERVLELIKEQ----------EAQAPRPVADAYAIVPDASALPVVMA 344

Query: 368 IYARLSKVGCDVFWDD---MGEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
              RL  +G  V        GE +GS    F  AD  G    ++ G+  ++   V IK  
Sbjct: 345 ALQRLRALGVSVQMHSPTAAGEGMGSMKSQFKKADASGSRFALVFGADEMARGAVTIKPL 404

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G + +  L  + ++A+  
Sbjct: 405 RDGGEQVERPLATLADWAASL 425


>gi|257460194|ref|ZP_05625298.1| seryl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257442635|gb|EEV17774.1| seryl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 416

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 71/205 (34%), Gaps = 10/205 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG K    +   + E  N  G   +++P L    +   +G+   +  ++  + D  ++ +
Sbjct: 169 LGAKLNMALINYMIEFNNSRGFELVNMPFLVRDQILYGTGQLPKFKDDLYHV-DDEEQNL 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E   T++F   I     LP         FR E     R   G++R  +F   + 
Sbjct: 228 YLIPTSEVTATNLFSDEILRSEELPIKLTSYSHCFRKEAGSAGRDTRGMIRQHQFEKVEL 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            +    PE S     +M      +   LGL    M   SG +G   +     E  +    
Sbjct: 288 VAI-TRPEDSAKMLEEMISCASDLLASLGLPHRHMLLCSGDLGFSAAKTVDLEVWLPGQN 346

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++    +  DF        F D
Sbjct: 347 QYREISSISNCRDFQARRAKIRFKD 371


>gi|219870880|ref|YP_002475255.1| seryl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|254783029|sp|B8F4Q5|SYS_HAEPS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219691084|gb|ACL32307.1| seryl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 434

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 17/200 (8%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-- 103
            +    ++  + +    + G +E  VP L + D    +G+   +G+++      + +   
Sbjct: 171 ARLHRALSQFMLDLHTEQHGYVETYVPYLVNHDTLYGTGQLPKFGEDLFHTQPLDGQDPN 230

Query: 104 -----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                    PT E  +T++ R  I    +LP         FR E     R   G++R  +
Sbjct: 231 AVQKPYALIPTAEVPVTNLVRDEILDEESLPLKLTAHTPCFRSEAGSYGRDTRGLIRMHQ 290

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSH--EF 210
           F   +       PE S  +  ++     ++   L L    M   SG +  G   ++  E 
Sbjct: 291 FDKVEMVQIVA-PEKSMEALEELTGHAEKVLQLLNLPYRKMLLCSGDMSFGSSKTYDLEV 349

Query: 211 IVLADTGETQVFCSKDFMDF 230
            + A     ++    +  DF
Sbjct: 350 WLPAQNTYREISSCSNMWDF 369


>gi|119897219|ref|YP_932432.1| histidyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|254782319|sp|A1K3Z0|SYH_AZOSB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119669632|emb|CAL93545.1| Histidine--tRNA ligase [Azoarcus sp. BH72]
          Length = 433

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 139/433 (32%), Gaps = 48/433 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +  ++   I+R+     G   + +P ++   L+  + G   D   K
Sbjct: 6   QAVRGMNDILPDEAETWEHFEDIVRDWLKSYGYRPIRMPLVEPTPLFKRAIGEVTDIVEK 65

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D  N + +   P            H     + P   Y     FR E RP+ G  
Sbjct: 66  EMYSFEDALNGEHLTLRPEGTASCVRAAIQHNLVAGHGPQRLYYHGPMFRHE-RPQKG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHE 209
           R R+F      +           +  M     R++  LGL+ + +   S G       H 
Sbjct: 123 RYRQFHQIGVEALGFAGPDIDAEHIIMCA---RLWDDLGLEDVSLEINSLGAAEERAQHR 179

Query: 210 FIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             ++A  +    ++        +  P    D  +      +  +     A      +   
Sbjct: 180 AALIAYLEQHRDKLDEDGQRRLYTNPLRILDTKNPDLQPVV--EAAPRLADYLGDESRAH 237

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKY--SLPMS--ATFKGAD----------------- 306
           FD++    + +     + H    G  Y          T  GA                  
Sbjct: 238 FDAVQLFLKDAGIPYRINHRLVRGLDYYNRTVFEWVTTRLGAQGTVCAGGRYDGLVAQLG 297

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK        + +G  R++ A+ + S        P+  AP  + ++++    +  +    
Sbjct: 298 GKPQPA--AGFAMGVERLL-ALWQESGGE-----PERQAP-DVYVVHLG---EAAQRLAF 345

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI 425
           +    L   G        G    SQ   AD  G  + V++G    +  +V +K  R  G 
Sbjct: 346 QAAEALRGHGFSAVLHCGGGSFKSQMKKADGSGASIAVVIGEDEAAAGEVGVKPLRGPGG 405

Query: 426 REDMSLEEVINYA 438
           ++ ++L  +    
Sbjct: 406 QQRVTLAALAEAV 418


>gi|284161335|ref|YP_003399958.1| glycyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011332|gb|ADB57285.1| glycyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 567

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 10/150 (6%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHD 358
           G+     +     G  R+  AV+E S D           +     VAP  ++++ + +  
Sbjct: 411 GEKIVPHVIEPSFGLDRITYAVLEHSFDKDVVEGEERRVLRLKRWVAPIPVAVLPLLSR- 469

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      ++I   L + G    +DD G  IG ++   D +G P  + +  +   D  V I
Sbjct: 470 EPFTSKAKEIVQMLRENGFYTEYDDSG-SIGRRYRRFDEIGTPFCITIDHQTFEDETVTI 528

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + R T  +  + + E+    +   ++++ +
Sbjct: 529 RDRDTTKQVRVKISELPKVLNELLTSDKDI 558



 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 66/212 (31%), Gaps = 67/212 (31%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQS 76
           +++ R G   Q         G   + PLG      +  I R+       A+E+  PT+  
Sbjct: 6   EMLTRRGFFWQSFEIYGGMAGFVDYGPLGNALRRKIENIWRKHFVVRERAVEIDTPTVCV 65

Query: 77  ADLWVESGRY-------------------DSYGKE------------------------- 92
            +++V SG                     D Y K+                         
Sbjct: 66  EEVFVASGHVSCFTDVAIECESCGRVFRADHYIKDVLGIEIEPNIETVKEIIETYDLKCS 125

Query: 93  -------------MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQ 136
                        M          K     P   + +   FR  ++ +R+ LPF   QI 
Sbjct: 126 CGGKFKEPFLFNLMFSTTIGPGKGKKGYLRPETAQGIFIDFRRLLEYFRHKLPFGVAQIG 185

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
             +R+E+ PR GV+R REF   +   F    E
Sbjct: 186 RAYRNEISPRQGVIRLREFNQAELEYFVNPRE 217


>gi|16077081|ref|NP_387894.1| seryl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307822|ref|ZP_03589669.1| seryl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312144|ref|ZP_03593949.1| seryl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317077|ref|ZP_03598371.1| seryl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221321340|ref|ZP_03602634.1| seryl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|586064|sp|P37464|SYS_BACSU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|467403|dbj|BAA05249.1| seryl-tRNA synthetase [Bacillus subtilis]
 gi|2632280|emb|CAB11789.1| seryl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 425

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +     E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNMHRDEILSGDSLPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|187479159|ref|YP_787184.1| seryl-tRNA synthetase [Bordetella avium 197N]
 gi|123514094|sp|Q2KWF5|SYS_BORA1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|115423746|emb|CAJ50296.1| seryl-tRNA synthetase [Bordetella avium 197N]
          Length = 449

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 66/212 (31%), Gaps = 24/212 (11%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMS 70
            PRD       L L      + S G       GQ A     +   + + Q    G  E  
Sbjct: 143 APRDHVAIGEPLGLDFDTAAKLS-GARFSFMRGQMARLHRALAQFMLDLQTGEHGYTECY 201

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA----------DRND-----KAMIYGPTHEEVMT 115
            P + ++     +G+   +  +M  +           D        +      T E  +T
Sbjct: 202 TPYIVNSSTLYGTGQLPKFKDDMFFVTKGGGDDDPKVDEQGKPLAREDQYLISTSEITLT 261

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            + R  I     LP         FR E     R   G++R  +F   +       PE S 
Sbjct: 262 SVVRDTIVPGDVLPLRMTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQV-ANPEQSY 320

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +  +M      +  RLGL    M   +G +G
Sbjct: 321 DALEQMVGHAEEVLRRLGLPYRVMLLCTGDMG 352


>gi|78212123|ref|YP_380902.1| seryl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|123578699|sp|Q3AM35|SYS_SYNSC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78196582|gb|ABB34347.1| seryl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 425

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 8/172 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L ++     SG+   + +E  R A 
Sbjct: 166 FVTLMGQGARLERALINFMLDLHTSKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCA- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 225 --EDDLWLTPTAEVPVTSLHRDEIIPADQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           F   + Y F + P+ S  ++ ++      +   L L    +   +  +G   
Sbjct: 283 FNKVELYWF-VHPDHSDEAHQRITADAEAVLQALELPYRVLDLCTADLGFSA 333


>gi|84394178|ref|ZP_00992909.1| seryl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84375198|gb|EAP92114.1| seryl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 435

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  G+ A     +   + +   +  G  E
Sbjct: 135 DFEVKDHVDLGEMSGGLDFASAVKISGSRFIVMKGKFARLHRAIAQFMLDLHTDEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L + D    +G+   +G+++        +++D   K +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNHDSLYGTGQLPKFGEDLFHTSPLTEQVSDVPLKTLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G   +     E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSAKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|332530379|ref|ZP_08406324.1| seryl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
 gi|332040190|gb|EGI76571.1| seryl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 437

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 18/231 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + + Q  + G  E   P + +AD    +G+   + +++
Sbjct: 162 TGARFTVMKGQIARLHRALAQFMLDVQTQQHGYTECYTPYIVNADTLRGTGQLPKFEEDL 221

Query: 94  LRLA------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL---- 143
                     +  + ++   PT E  +T+  R  I +  +LP         FR E     
Sbjct: 222 FAAKKGGQEGEAENVSLYLIPTSEVTLTNFVRDEIVAEADLPIKLTAHTPCFRSEAGSYG 281

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           R   G++R  +F   +     + P+ S  +  +M      I  +LGL    M   +G +G
Sbjct: 282 RDTRGMIRQHQFDKVEMVQI-VHPDKSYEALEEMTRHAEAILQKLGLPYRVMSLCTGDMG 340

Query: 204 GDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              +     E  + A     ++    +   F        F +    N ++ 
Sbjct: 341 FGAAKTYDLEVWLPAQNTYREISSVSNCEAFQARRLQARFKNAQGKNELLH 391


>gi|297717880|gb|ADI50083.1| seryl-tRNA synthetase [Candidatus Odyssella thessalonicensis L13]
          Length = 429

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 14/201 (6%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             + A + +    + G  E+  P L        +G+   + ++  +    +       PT
Sbjct: 174 RALAAFMIDIHTSQYGYQEVYAPVLVHEKTMYGTGQLPKFREDQFQTTTGH----WIIPT 229

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E V+T++    I +   LP  +      FR E     R   G++R  +F   +  S   
Sbjct: 230 AEVVLTNLVAEAILAEEQLPLRYTAYTPCFRAEAGAAGRDTRGMIRLHQFGKVELVSI-T 288

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
            P  SK  + +M ++   I  +L L    M   +G +G         E  + +     ++
Sbjct: 289 HPSESKAEHERMTMAAEEILKQLKLPYRVMALCAGDMGFSAQKTYDLEVWLPSQNTYREI 348

Query: 222 FCSKDFMDFPIPSENTDFDDI 242
               +  +F     N  +  +
Sbjct: 349 SSCSNCSNFQARRMNARYRPM 369


>gi|300811782|ref|ZP_07092255.1| serine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497281|gb|EFK32330.1| serine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|325685463|gb|EGD27561.1| serine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 435

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E    G  E+  P+L + D    +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVYNFFLDENTSEGYTEVITPSLVNNDSMQGTGQFPKFTEDVYTIVD 222

Query: 99  RNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D  +       PT E  + + FR  I   +NLP     +   FR E     R   G++
Sbjct: 223 NDDPEVARNLTLIPTAEVPLVNYFRGDIIDGKNLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     + PE S      +  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKV-VKPEDSWKELENLTHNAEHLLQKLGLPYRVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDTYREISSCSNCTDFQARRAQIRYRDEDGKVKLTH 385


>gi|300775357|ref|ZP_07085219.1| serine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300506097|gb|EFK37233.1| serine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 422

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 71/210 (33%), Gaps = 10/210 (4%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +     G   +L  G +    +     ++    G  E++ P + +      +G+      
Sbjct: 159 VKIAGAGFPVYLGKGARLQRALVQYFLDKNVEKGYTEVNPPHVVNEASGFGTGQLPDKEG 218

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRF 147
           +M  +   N+  +   PT E  +T+++R  +   ++LP         +R E         
Sbjct: 219 QMYYI---NEDKLYLIPTAEVPVTNLYRDVLFDEKDLPVKNTAFSQCYRREAGSYGAHVR 275

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GD 205
           G+ R  +F   +       PE S     +M      I   L L    +R   G  G    
Sbjct: 276 GLNRLHQFEKVEIVRI-EKPENSYAVLEEMVEHIKEILTDLELPFRVLRLCGGDTGFASA 334

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++++F V +   E  +  S         + 
Sbjct: 335 MTYDFEVWSAAQEMWLEVSSVSNFETFQAN 364


>gi|148827255|ref|YP_001292008.1| seryl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166222730|sp|A5UFR9|SYS_HAEIG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148718497|gb|ABQ99624.1| seryl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 429

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA + ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALQGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|217316835|gb|ACK37823.1| putative glutamyl-prolyl tRNA synthetase [Anchistioides
           antiguensis]
          Length = 134

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  +  +  Y    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGAXSHHLGQNFSKMFEIIFEDPETQQKQYCYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  ++ +               +AC K+   L   G     D   
Sbjct: 74  GLVLPPRVATIQAVIVPVGITVKTSEQERADIYNACXKLTEELKACGVXXRCDLRD 129


>gi|104774578|ref|YP_619558.1| seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116514698|ref|YP_813604.1| seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122274570|sp|Q048F6|SYS_LACDB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123077195|sp|Q1G8N2|SYS_LACDA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|103423659|emb|CAI98620.1| Seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116094013|gb|ABJ59166.1| seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325126383|gb|ADY85713.1| Seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 435

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E    G  E+  P+L + D    +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVYNFFLDENTSEGYTEVITPSLVNNDSMQGTGQFPKFTEDVYTIVD 222

Query: 99  RNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D  +       PT E  + + FR  I   +NLP     +   FR E     R   G++
Sbjct: 223 NDDPEVARNLTLIPTAEVPLVNYFRGDIIDGKNLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     + PE S      +  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKV-VKPEDSWKELENLTHNAEHLLQKLGLPYRVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDTYREISSCSNCTDFQARRAQIRYRDEDGKVKLTH 385


>gi|237752023|ref|ZP_04582503.1| seryl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376590|gb|EEO26681.1| seryl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 425

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 15/224 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            ++ +G K    +   + +  +  G  E+  P + +A     +G+   + +++ +++D  
Sbjct: 165 VFMGMGAKLERALINYMLDFNSARGFSEVGTPVIANAQTLFGTGQLPKFEEDLFKISDFK 224

Query: 101 DKAM------IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           D+           PT E  +T+++   I     LP         FR E     R   G++
Sbjct: 225 DEESGKGHALYLIPTAEATLTNLYSDEILKEDMLPVMLTAYTPCFRKEAGSAGRDTRGII 284

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +  +  + P+ S     +M      +   LGL    ++   G +G   S+  
Sbjct: 285 RQHQFDKVELVALTM-PQDSDMMQERMIACASELLVSLGLPHRLVQLCGGDLGFSASNTV 343

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  +       ++    +  DF        + D    N +V 
Sbjct: 344 DIEVWLPGQNCYREISSISNTRDFQARRAKIRYKDSNKKNVLVH 387


>gi|219871010|ref|YP_002475385.1| histidyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|219691214|gb|ACL32437.1| histidyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 419

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 141/436 (32%), Gaps = 58/436 (13%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLA--DR 99
           P        V + IR+     G  EM  P ++S DL+    G   D   KEM      + 
Sbjct: 6   PTETPLWQWVESNIRDTFASYGYTEMRSPIMESTDLFKRGVGEATDIVEKEMFTFTRSEE 65

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             ++    P            H   Y       + I   FR E RP+ G  R R+F    
Sbjct: 66  AGESFTLRPEGTAGCVRAAIEHGWIYNQE-QRLWYIGPMFRYE-RPQKG--RYRQFHQAG 121

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
              F +    +      + V   R++ +LG++   +  +   IGG       V     E 
Sbjct: 122 VEIFGIPNAEADAE---LIVLTARLWEKLGIRE-HVTLQLNSIGG-----LEVRTRYREA 172

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA----ATSDVHNEKLFDSLPENK 275
            V   ++ +D      +++     +   I++               +H+    +S     
Sbjct: 173 LVAFLQNHLDVLKQDPDSERRLTTNPLRILDTKNQALQAVLNDAPKLHDFLDDESKAHFA 232

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA----------TFKGADGK---------------DH 310
           R+ A   E+G  +    K    +            T  GA G                 H
Sbjct: 233 RLCAILDEMGIAYEVNQKLVRGLDYYNKTVFEWVTTALGAQGTVCGGGRYDGLVAQLGGH 292

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
             +   + +G  R+V  V E +        P+   P  + +  + +  +       ++  
Sbjct: 293 ATEGVGFAMGLERLVLLVQEVN--------PNVQLPRAVDIYVVHSG-EGTTAVAFRLTE 343

Query: 371 RLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIRE 427
            L              G     QF  AD  G  + +++G   V++ KV +K       + 
Sbjct: 344 TLRNAFPQLRTMLHTSGGNFKKQFKRADKSGAKIALVLGESEVAEQKVVVKDLFGEAEQM 403

Query: 428 DMSLEEVINYASHRFS 443
            ++  ++IN  + RF+
Sbjct: 404 TIAQADLINELTTRFA 419


>gi|218710023|ref|YP_002417644.1| seryl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|254783502|sp|B7VH19|SYS_VIBSL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218323042|emb|CAV19219.1| Seryl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 435

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  G+ A     +   + +   +  G  E
Sbjct: 135 DFEVKDHVDLGEMSGGLDFASAVKISGSRFIVMKGKFARLHRAIAQFMLDLHTDEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L + D    +G+   +G+++        +++D   K +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNHDSLYGTGQLPKFGEDLFHTSPLTEQVSDVPLKTLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G   +     E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSAKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|145223306|ref|YP_001133984.1| glycyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315443766|ref|YP_004076645.1| glycyl-tRNA synthetase [Mycobacterium sp. Spyr1]
 gi|145215792|gb|ABP45196.1| glycyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315262069|gb|ADT98810.1| glycyl-tRNA synthetase [Mycobacterium sp. Spyr1]
          Length = 467

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/382 (15%), Positives = 120/382 (31%), Gaps = 72/382 (18%)

Query: 82  ESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             G++       M+       +        +   T + +  +       + +  PF   Q
Sbjct: 136 TKGQWTEPRDFNMMLKTYLGPIESEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQ 195

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           I   FR+E+ P   + R+REF   +   F + P  +   +     + L+ +  LG++   
Sbjct: 196 IGKSFRNEITPGNFIFRTREFEQMEMEFF-VEPSTAAEWHKYWIETRLQWYVDLGIERDN 254

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +R                                + P    +   D    +         
Sbjct: 255 LRL------------------------------YEHPKEKLSHYSDGTTDIEYKFGFAGN 284

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           P+     + N   FD    ++     G+++       + Y       +           +
Sbjct: 285 PWGELEGIANRTNFDLSTHSQ---HSGVDL-------SFYDQAADTRYV--------PYV 326

Query: 315 GSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVC 361
                G  R + A +  ++                 +     +AP K +++ +  H    
Sbjct: 327 IEPAAGLTRSLMAFLVDAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADL 385

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 + A L +   +V +DD G  IG ++   D +G P  + V    + D  V I+ R
Sbjct: 386 SPKARDLAAELRQSW-NVEFDDAGA-IGRRYRRQDEIGTPYCITVDFDSLEDHAVTIRER 443

Query: 422 LTGIREDMSLEEVINYASHRFS 443
               +E +++ EV NY + R  
Sbjct: 444 DAMSQERIAISEVSNYLAVRLK 465


>gi|313124469|ref|YP_004034728.1| seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312281032|gb|ADQ61751.1| Seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 435

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E    G  E+  P+L + D    +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVYNFFLDENTSEGYTEVITPSLVNNDSMQGTGQFPKFTEDVYTIVD 222

Query: 99  RNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D  +       PT E  + + FR  I   +NLP     +   FR E     R   G++
Sbjct: 223 NDDPEVARNLTLIPTAEVPLVNYFRGDIIDGKNLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     + PE S      +  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKV-VKPEDSWKELENLTHNAEHLLQKLGLPYRVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDTYREISSCSNCTDFQARRAQIRYRDEDGKVKLTH 385


>gi|212709769|ref|ZP_03317897.1| hypothetical protein PROVALCAL_00817 [Providencia alcalifaciens DSM
           30120]
 gi|212687580|gb|EEB47108.1| hypothetical protein PROVALCAL_00817 [Providencia alcalifaciens DSM
           30120]
          Length = 430

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 17  DAEIASHKLM--LRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +  L  G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVKDHVSLGELAGGLDFPAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEKHGYQE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
           + VP L +      +G+   +G+++       ++A        PT E  +T++ R  I  
Sbjct: 193 LYVPYLVNHATLYGTGQLPKFGEDLFHTKPLEEEADSSTYALIPTAEVPVTNLVRDEILD 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 253 EDALPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VHPEKSMAALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
             ++   L L    +   +G IG         E  + A     ++    +  DF      
Sbjct: 312 AEKVLQLLNLPYRKVLLCTGDIGFGSRKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQ 371

Query: 237 TDF 239
             F
Sbjct: 372 ARF 374


>gi|73667326|ref|YP_303342.1| histidyl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|83305869|sp|Q3YRB1|SYH_EHRCJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|72394467|gb|AAZ68744.1| histidyl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 413

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 129/429 (30%), Gaps = 74/429 (17%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEMLRLADRNDKAMIYG 107
              +  + +   NR G I +  P ++  +++ ++   DS    KEM    D++ + +   
Sbjct: 23  FQYIQHLSQAIANRYGFIAVDTPIIEFTEVFTKTLGDDSDIVTKEMYNFQDKSGENITLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P   E  + I R  I      P   +     FR E RP+    R R+F   +   F    
Sbjct: 83  P---EFTSAIVRLLINKNLVTPVKLFSSGPVFRYE-RPQK--CRQRQFHQVNFEFFGSDS 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKS-----IPMRAESGPIGG--------------DLSH 208
             +      M      I   L L +     I    +   +                DLS 
Sbjct: 137 PLADVE---MIALGYNILSELKLLNNITLEINFLGDKETMNSYRLSLVEYLNKYKKDLSG 193

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +      T   +V  SK   D  I     +  D  +  S              +      
Sbjct: 194 DSQRRLITNPLRVLDSKSPEDCEILLNAPNIGDFYTKYSSDFFTE-------VLDGLNDL 246

Query: 269 DSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIGA--- 321
               +      RG++     +F F T      +A   G   DG       G+        
Sbjct: 247 CIPYQLNNRIVRGLDYYCNTVFEFTTSELGSQNAVIAGGRYDG-LVRSMGGNDTPAVGFA 305

Query: 322 --MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
             +  V+A+I+  H               + L+ I            K+   L   G  V
Sbjct: 306 MGIERVSALIDYEHKES----------RNVVLVPIGKD---AMSYALKLAYELRCKGISV 352

Query: 380 FWDDMGEQIGSQ---FAVADLLGFP---LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            W         +        L       + +I G + +  + V++K   TG ++++    
Sbjct: 353 GW-------NYKNTGLKNM-LRKINDNSIVLIFGDEELKSNTVQVKDMKTGEQQEVEKGN 404

Query: 434 VINYASHRF 442
           +++   ++ 
Sbjct: 405 LLDALYNKI 413


>gi|145608852|ref|XP_369806.2| hypothetical protein MGG_06321 [Magnaporthe oryzae 70-15]
 gi|145016282|gb|EDK00772.1| hypothetical protein MGG_06321 [Magnaporthe oryzae 70-15]
          Length = 665

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSH---DGKG-------IIWPDSVAPFKISLINI 354
            + ++    +     G  R++  ++E ++      G       + +   VAP K+ ++ +
Sbjct: 493 ENTREFIPNVIEPSFGIGRILYCLLEHNYWTRASDGGDEARGVLSFTPVVAPTKVLIVPL 552

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             HD       +KI  +L  VG     DD    IG +++  D LG PL + V  + V D 
Sbjct: 553 SRHDDFV-PFVQKISQKLRSVGVSSRVDDSSATIGRRYSRNDELGTPLGITVDFQTVKDG 611

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + ++ R T ++     ++++       S N+
Sbjct: 612 TITLRDRDTTVQVRADQDKIVEAIQELVSGNK 643



 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           + + +PF    I   +R+E+ PR G++R REFLM +   F + PE 
Sbjct: 238 NNQQMPFASASIGKSYRNEISPRSGLLRVREFLMAEIEHF-VDPES 282



 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 10 ILQENPRDAEIASHKLMLRTGM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQN-R 63
           L+  P D       L  R        I+    G+Y + P G     N+    R+     
Sbjct: 7  TLKGQPLDRGALDTILRRRMFYTPSFEIYGGVSGLYDYGPPGCALQANIIDAWRKHFVLE 66

Query: 64 TGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
             +E+    L  AD+   SG  D +   M
Sbjct: 67 DDMLEVDCSVLTPADVLKTSGHVDKFADWM 96


>gi|86147113|ref|ZP_01065430.1| seryl-tRNA synthetase [Vibrio sp. MED222]
 gi|85835178|gb|EAQ53319.1| seryl-tRNA synthetase [Vibrio sp. MED222]
          Length = 435

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  G+ A     +   + +   +  G  E
Sbjct: 135 DFEVKDHVDLGEMSGGLDFASAVKISGSRFIVMKGKFARLHRAIAQFMLDLHTDEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L + D    +G+   +G+++        +++D   K +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNHDSLYGTGQLPKFGEDLFHTSPLTEQVSDVPLKTLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G   +     E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVILCTGDMGFGSAKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|326403078|ref|YP_004283159.1| seryl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325049939|dbj|BAJ80277.1| seryl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 433

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 14/203 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +   N  G  E+S P L +      +G+   + +++ R  D         PT
Sbjct: 181 RALGQFMLDLHVNEHGYTEVSPPLLVNDTTMYGTGQLPKFAEDLFRTTD----GRWLIPT 236

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I    +LP     +   FR E     R   G++R  +F   +  S   
Sbjct: 237 AEVPLTNLAAGEILDAASLPLRMTALTPSFRSEAGSAGRDTRGMLRQHQFWKVELVSL-T 295

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
           TPE S   + +M      +  RLGL    M   +G  G   +     E  +       ++
Sbjct: 296 TPEASADEHERMTSCAESVLERLGLPYRRMLLCAGDTGFSSAKTYDLEVWLPGQGAYREI 355

Query: 222 FCSKDFMDFPIPSENTDFDDIIS 244
               +   F     N  +    +
Sbjct: 356 SSCSNCRAFQARRMNARYRPPQT 378


>gi|229083329|ref|ZP_04215689.1| Seryl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228699976|gb|EEL52601.1| Seryl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 424

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 9/173 (5%)

Query: 46  GQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G K    + + + +         E+  P + +      +G+   + ++  R+   +    
Sbjct: 170 GAKLERALISFMLDLHTEEHEYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIESED---Y 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I +   LP  +      FR E     R   G++R  +F   + 
Sbjct: 227 FLIPTAEVPVTNMHRDEILNVDQLPIRYAAFSACFRSEAGSAGRDTRGLIRQHQFNKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             F + PE S     K+     R+   LGL    M   +G +G   + ++ + 
Sbjct: 287 VKF-VKPEDSYEELEKLTNDAERVLQLLGLPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|15598997|ref|NP_252491.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|116051827|ref|YP_789330.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254236706|ref|ZP_04930029.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa C3719]
 gi|254242493|ref|ZP_04935815.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|296387683|ref|ZP_06877158.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
 gi|313109220|ref|ZP_07795188.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|32130147|sp|Q9HXJ5|SYH_PSEAE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122260974|sp|Q02RV6|SYH_PSEAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|9949975|gb|AAG07189.1|AE004798_12 histidyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|115587048|gb|ABJ13063.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168637|gb|EAZ54148.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa C3719]
 gi|126195871|gb|EAZ59934.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|310881690|gb|EFQ40284.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 429

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 135/445 (30%), Gaps = 56/445 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP    A   +        +  G  E+ +P L+  +L+        D   K
Sbjct: 6   QAIRGMNDILPEQTPAWRYLERTFAGLLDGYGYSEIRLPILEFTELFARGIGEGTDVVDK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H  S        +     FR E +P+ G  R
Sbjct: 66  EMYTFLDRNGESLTMRPEGTAGCVRAVLEHGLSGGGQVQKLWYTGPMFRYE-KPQKG--R 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F+L           + +   R++ +LG+      A +  +    S E  
Sbjct: 123 YRQFHQIGVEVFNLPGPDIDAE---LIILTWRLWQKLGMAD----AVTLQLNTLGSSEAR 175

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                        +              + +  L+S VE   A       +H+    +S+
Sbjct: 176 ARYREALVAYLQERFEQLDEDSQRRMTTNPLRILDSKVESTQALLVGAPTLHDYLDEESI 235

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSA-------TFKGADGKD--------------- 309
              + + AR   VG  +    K    +               G                 
Sbjct: 236 AHFEGLKARLDAVGLRYEINQKLVRGLDYYCRTAFEWVTDKLGAQGTVCGGGRYDGLVSQ 295

Query: 310 ---HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQVCRDAC 365
                     + +G  R+V  ++E+       + P  +  P  + +       +    A 
Sbjct: 296 FGGKPTPGVGFAMGVERLVL-LLETLG-----VIPAELNRPADLYVCAFG---EPAELAA 346

Query: 366 EKIYARLSKV--GCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK- 419
             +  +L     G  +         G  +  F  AD  G    +I+G   V++  V  K 
Sbjct: 347 LTLAEQLRSAIPGIRLLV---NAGAGSFKSQFKKADKSGARFALILGEDEVANRVVGFKP 403

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R  G ++ ++ + +  + +   + 
Sbjct: 404 LRDEGEQQSIAWDALPEHLAACLAQ 428


>gi|332665948|ref|YP_004448736.1| seryl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334762|gb|AEE51863.1| seryl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 425

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 73/217 (33%), Gaps = 10/217 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G K    +     +E +  G  E+  P + + D    +G+      +M  
Sbjct: 164 GAGFPVYRGKGAKLERALINFFLDEASAAGYEEIIPPLMVNEDSARGTGQLPDKEAQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +   N   +   PT E  +T+I+R  I     LP         FR E         G+ R
Sbjct: 224 VTLDN---LYLIPTAEVPVTNIYRDEILDAAALPIKMTAYTPCFRREAGSYGAHVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
             +F   +     + P+ S  +  +M      + ++LGL    +R   G +G    L+ +
Sbjct: 281 VHQFDKIEIVQI-VHPDKSYDTLMEMLEHVAGLLNKLGLPFRILRLCGGDMGFTSALTFD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           F V +   +  +  S         S           +
Sbjct: 340 FEVWSAAQKRWLEVSSVSNFETFQSNRMKMRFREGRD 376


>gi|307566163|ref|ZP_07628618.1| glycine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307345128|gb|EFN90510.1| glycine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 517

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 113/367 (30%), Gaps = 75/367 (20%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M            + +   P T + +  +           LPF   QI   FR+E+  R 
Sbjct: 197 MFSTEMGSTAEGSQKIYLRPETAQGIFVNFLNVQKTGRMKLPFGIAQIGKAFRNEIVARQ 256

Query: 148 GVMRSREFLMKDAYSFDLTP--EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            V R REF   +   F   P  E     Y K                       G   GD
Sbjct: 257 FVFRMREFEQMEMQ-FFCQPGTEMKWFEYWKAHRLAWH---------------EGLGMGD 300

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            ++ F                         +       +   I       +     +H+ 
Sbjct: 301 ENYRFH----------------------DHDKLAHYANAATDIEFHLPFGFKEIEGIHSR 338

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             FD     K  S R I          KY  P          +++   +    IG  R+ 
Sbjct: 339 TNFDLSQHEK-FSGRQI----------KYFDP-------ELNENYTPYVVETSIGVDRMF 380

Query: 326 AAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            +V+  ++  + +           P+ +AP K +++ +   D    +  ++I   L K  
Sbjct: 381 LSVMCHAYQEEKLDNGSSRIVLKLPEPLAPIKCAVLPLVNKD-GLPEKAQEIVNDL-KFH 438

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                 +  + IG ++   D +G P  V V    +S+  V +++R T  +E + + ++  
Sbjct: 439 FTTHM-EAKDSIGKRYRRQDAIGTPFCVTVDGNTLSEGTVTLRYRDTMEQERVPISKLRE 497

Query: 437 YASHRFS 443
               R S
Sbjct: 498 IIEDRVS 504


>gi|260752559|ref|YP_003225452.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551922|gb|ACV74868.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 425

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 12/178 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + + Q  + G  E++ P L        +G+   + +++
Sbjct: 159 SGARFALMKGAMARLNRAIGQYMLDCQTEKNGFTEIAPPLLVRDHALFGTGQLPKFEEDL 218

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
               D         PT E  +T+I R  I   + LP  F  +   FR E     R   G+
Sbjct: 219 FHTTD----DRWLIPTAEVCLTNIVRESILDEKALPLRFTALTPCFRAEAGAAGRDTRGL 274

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           +R  +F   +  +   TPE S     +M     +I   L L    +   +G +G   +
Sbjct: 275 IRQHQFDKVEMVAI-TTPEQSTAEQMRMVECAEQILQNLKLPYRRVLLCTGDMGFSAT 331


>gi|238920371|ref|YP_002933886.1| seryl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259511668|sp|C5BE90|SYS_EDWI9 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238869940|gb|ACR69651.1| seryl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 430

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 74/209 (35%), Gaps = 16/209 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +    + G +E  VP L + D    +G+   +G ++
Sbjct: 158 TGARFVVMKGQIARMHRALAQFMLDLHTEQHGYLETYVPYLVNHDTLYGTGQLPKFGADL 217

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                  ++A        PT E  +T++ R  I     LP         FR E     R 
Sbjct: 218 FHTRPLEEEADSSIYALIPTAEVPVTNLVRGEILEESALPLKMTAHTPCFRSEAGSYGRD 277

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +     + PE S  +  ++     ++   L L    +   +G +G  
Sbjct: 278 TRGLIRMHQFDKVELVQI-VRPEDSMAALEELTAHAEKVLQLLNLPYRKVLLCTGDMGFG 336

Query: 206 LSH----EFIVLADTGETQVFCSKDFMDF 230
            S     E  V A     ++    +  DF
Sbjct: 337 SSKTYDLEVWVPAQNTYREISSCSNMWDF 365


>gi|224826934|ref|ZP_03700033.1| seryl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224600921|gb|EEG07105.1| seryl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 428

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--- 102
            +    +   +     N+ G  EM  P + +  +   +G+   + ++M ++    ++   
Sbjct: 169 AQLHRALAQFMLNTHTNQHGYTEMYTPYIVNDSVLFGTGQLPKFAEDMFKVTRGGEEGAV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 DQYLISTSEITLTNTVRESILKLDELPVKMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +     + PE S  +  +M      I   L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQV-VHPEKSYDALEEMVGHAEAILKALELPYRVITLCTGDMGFGAAKTYDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F D    N +V 
Sbjct: 348 QNTYREISSCSNCEAFQARRMQARFKDENGKNQLVH 383


>gi|297626120|ref|YP_003687883.1| glycyl-tRNA synthetase (glycine--tRNA ligase) (GlyRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921885|emb|CBL56445.1| Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 462

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 84/502 (16%), Positives = 149/502 (29%), Gaps = 138/502 (27%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G +          K  + + PLG +  +N+          +    + +    +  
Sbjct: 12  LCKRRGFVFPCGEIYGGTKAAWDYGPLGVELKENIKKQWWRYMVTSRGDIVGLDSSVILP 71

Query: 77  ADLWVESG-------------------RYDSYGKE------------------------- 92
            ++WV SG                   R D   +E                         
Sbjct: 72  REVWVASGHVAVFNDPLVECQNCHKRFRADQLQEEYAFRKGIADADTVKLEDIPCPNCGV 131

Query: 93  -----------ML---RLADRNDKA--MIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQI 135
                      M+    L   +D+A      P   + +   F++ + S R  P F   Q 
Sbjct: 132 RGKFTEPRDFNMMLETYLGPIHDEAGLHYLRPETAQGIFINFKNVLTSTRMKPPFGVGQT 191

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
              FR+E+ P   + R+REF   +   F    T E     +     ++   +  LG++  
Sbjct: 192 GKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHQYWIDHRKAW---YVGLGIEED 248

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +R    P    LSH      D      F   D+ +    +  TDFD             
Sbjct: 249 NLRLFEHP-KEKLSHYSKRTVDIEYKFGFAGSDWGELEGIANRTDFDLKT---------- 297

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                                           H  + GT  S      F  A  K +   
Sbjct: 298 --------------------------------HTEHSGTDLS-----YFDQAQNKHYIPY 320

Query: 314 MGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQV 360
           +     G  R   A +  ++                 +     +AP K++++ + + ++ 
Sbjct: 321 VIEPAAGLTRSFMAFMVDAYTEDEAPNAKGGVDKRTVLKIDPRLAPVKVAVLPL-SRNEK 379

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                  +   L +   +V +DD    IG ++   D +G P  V +    + D  V I+ 
Sbjct: 380 LSPKARGLADELRQYW-NVDFDDAQA-IGKRYRRQDEIGTPYCVTIDFDTLDDDAVTIRE 437

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +  +E + L  V  Y S R 
Sbjct: 438 RDSMAQERVPLSGVSEYLSSRL 459


>gi|239978421|ref|ZP_04700945.1| histidyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291450317|ref|ZP_06589707.1| histidyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291353266|gb|EFE80168.1| histidyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 420

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 134/435 (30%), Gaps = 42/435 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  LP        V   I      +G   +  P  +   L+        D   
Sbjct: 4   FKAPKGTYDLLPPDSATYLAVREAISAPLRNSGYGYIETPGFEDVALFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDQLALRPEG-TASVLRAALEASLHKAGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL+   +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLREFRILLNSLGDQECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 EF+   D  E             +  +  D    ++   ++  +          
Sbjct: 177 YRAALQEFLRGLDLDEETRRRIDINPLRVLDDKRADVQKQLTDAPVLRDYLCDACKAYHE 236

Query: 263 HNEKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKGAD---GK 308
               L  +         R             E  H    G++ ++     + G     G 
Sbjct: 237 EVRALISAAGVVFEDDERLVRGLDYYTRTTFEFVHDG-LGSQSAVGGGGRYDGLSEMIGG 295

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +G + +G  R V A+     +G  +  P   +P  +  + +    +  R A   +
Sbjct: 296 PALPSVG-WALGVDRTVLAL---RAEGVELDLP---SPTSVFAVPLG---EEARRALFGV 345

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             RL + G    +   G+ + +    A+  G    ++ G + +++  V++K   +G +  
Sbjct: 346 VTRLRQDGVAADFAYGGKGLKAAMKAANRSGARYTLVAGERDLAEGVVQLKEMESGEQTA 405

Query: 429 MSLEEVINYASHRFS 443
           + L+ V+   + R +
Sbjct: 406 VPLDSVVAEVAARLA 420


>gi|260581970|ref|ZP_05849765.1| seryl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260094860|gb|EEW78753.1| seryl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 429

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
            ++   + +    + G +E  VP L +      +G+   +G+++   LA + ++     P
Sbjct: 175 RSLAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALQGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|157813058|gb|ABV81274.1| putative bifunctional aminoacyl-tRNA synthetase [Limulus
           polyphemus]
          Length = 134

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++     + G  +S      F+  +  +  +V   S+GI + R + A++    D  
Sbjct: 15  SGRGLQGATSHHLGQNFSKMFEVVFEDPETSEKKFVYQNSWGI-STRTIGALVMIHSDNV 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA F++ +I          A      +  +   + L + G     D       
Sbjct: 74  GLVLPPQVACFQVVIIPCGITASLTDADKNDLINKSKDFESMLMESGIRTHCDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|309378431|emb|CBX22926.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 431

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +      G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLEHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + +      +G+   +G+++  +    D +  A    PT E  +T+     I    
Sbjct: 195 YTPYIVNGGTLYGTGQLPKFGEDLFHVTRGGDESKTAQYLIPTAEVTLTNTVAGSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGAYGKDVRGLIRQHQFDKVEMVQI-VHPEKSYGALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I   L L    +   +G +G   +     E  V A     ++    +  DF        
Sbjct: 314 NILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKAR 373

Query: 239 FDDIISLNSIVE 250
           F D    N +V 
Sbjct: 374 FKDENGKNRLVH 385



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
           M A FK  +GK+  V  +   G+   R + AV+E+  +  G I  P ++ P+
Sbjct: 370 MKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPY 421


>gi|291615031|ref|YP_003525188.1| seryl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291585143|gb|ADE12801.1| seryl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 445

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 36/273 (13%)

Query: 13  ENPRDA-EIASHKLMLRT--GMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQ-NR 63
           E P+ A E+  H  +     G+  + +    G    L  G   +    +   + +    +
Sbjct: 128 EIPKFAFEVKDHVSIGEGLGGLDFETATKIAGARFSLLKGPLARLHRALAQFMLDTHTEQ 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------------------NDKAMI 105
            G  E  VP L +AD    +G+   +  ++ R+  R                        
Sbjct: 188 HGYTETYVPYLVNADSMRGTGQLPKFEADLFRVTARPSANRLTALIHPEATQFEEVGDFY 247

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  F      FR E     R   G++R  +F   +  
Sbjct: 248 LIPTAEVPVTNMVRDEIVPLEKLPLKFVAHTPCFRSEAGSYGRDTRGMIRQHQFDKVELV 307

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S  +   +      I   LGL    ++  +G +G   +     E  + A   
Sbjct: 308 QI-VHPEKSYEALEGLLGHAETILKLLGLPYRVVKLCTGDMGFSAATTYDIEVWLPAQNT 366

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +F  F        F +      +V 
Sbjct: 367 YREISSCSNFEAFQARRMQARFRNAAGKPELVH 399


>gi|77408139|ref|ZP_00784885.1| histidyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77173239|gb|EAO76362.1| histidyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 426

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 129/426 (30%), Gaps = 41/426 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  +IR    +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGESAKWQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF       F      +      M      +F  LG+K++ +   S  +G   
Sbjct: 120 AG--RLREFHQVGVECFGSNNPTTDVETIAMG---HHLFEDLGIKNVKLHLNS--LGSPE 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +    A          +   D            + S     +       +  D  +E 
Sbjct: 173 SRQAYRQALIDYLTPIREQLSKDSQRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDES 232

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
               FD++            +      G  Y       F     D +      G Y    
Sbjct: 233 SQAHFDAVCHMLDALNIPYIIDTNMVRGLDYYNHTIFEFITEIEDNELTICAGGRYDGLV 292

Query: 322 MRVVAA-------------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                               +    D +GI  P       + +  + +       A   +
Sbjct: 293 S-YFGGPETPAFGFGLGLERLLLILDKQGISLPIENT-IDLYIAVLGS---EANLAALDL 347

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              +   G  V  D +G +I +QF  AD     + + +GS  V   +V +K+  T     
Sbjct: 348 AQSIRHQGFKVERDYLGRKIKAQFKSADTFNAKVIMTLGSSEVDSKEVGLKNNQTRQEVK 407

Query: 429 MSLEEV 434
           +S E +
Sbjct: 408 VSFENI 413


>gi|206561375|ref|YP_002232140.1| seryl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|238693102|sp|B4EBR4|SYS_BURCJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|198037417|emb|CAR53352.1| seryl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 433

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+      N  
Sbjct: 169 ARLHRALAQFMIDTHTQQHGYTETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVDGAALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PETSYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|148244761|ref|YP_001219455.1| histidyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166228628|sp|A5CWE8|SYH_VESOH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146326588|dbj|BAF61731.1| histidyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 422

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 145/434 (33%), Gaps = 46/434 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP       ++   I +     G   +  P ++  D +  +  G  D   K
Sbjct: 6   QAIRGMNDLLPKNSALWLSLEKTIFDLFITYGYQNIRTPIVEKTDTFCRAIGGDTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    + + +++   P        +   H     ++   FYQ    FR E RP+ G  R
Sbjct: 66  EMYSWKETSGESLSLRPEGTAGCVRMMIEHNLPRESIQKVFYQ-GAMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD 205
            R+F       F +    +      +  +   ++  +GLK+I +   +            
Sbjct: 122 YRQFHQVGLEIFGVFNAKADAELMIIMHA---LWQTIGLKNIVLEINTLGSNEVRNAYRK 178

Query: 206 LSHEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           +   +         E  +   K      + S+N     +IS    +  +    +      
Sbjct: 179 ILVAYFNQHKNQLNEDGLKQLKTNPFRILDSKNKAIHSLISDAPKLMDYLDKKSIQHFKQ 238

Query: 264 NEKLFDS---LPENKRVSARGIEV-------GHIFYFGTKYSLPMSATFKG--ADGKDHY 311
            +   D+            RG++              GT+ ++     + G         
Sbjct: 239 FKSYLDALNITYVINTSLVRGLDYYNRTVFEWTTTDLGTQSTICAGGRYDGLIEKMGGTP 298

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYA 370
                  IG  R+V  +     + + +I   S     I LI     +Q         ++ 
Sbjct: 299 TPAVGLAIGLERLVLLL-----EAQNLISTKST--LSIYLIAFGKKEQIKSIQIANVLHD 351

Query: 371 RLSKVGCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIR 426
            L  V   + ++D    +G  +  F  AD       +I+G + ++++++ IK  R  G +
Sbjct: 352 ELPNV---ILYND--LTLGSFKSQFEKADKAKANFALILGEQELNNNQISIKPLRNQGTQ 406

Query: 427 EDMSLEEVINYASH 440
           + M+LEE I Y   
Sbjct: 407 QTMNLEEAIKYFKE 420


>gi|148981577|ref|ZP_01816464.1| seryl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145960820|gb|EDK26154.1| seryl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 435

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  G+ A     +   + +   +  G  E
Sbjct: 135 DFEVKDHVDLGEMSGGLDFASAVKISGSRFIVMKGKFARLHRAIAQFMLDLHTDEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L + D    +G+   +G+++        +++D   K +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNHDSLYGTGQLPKFGEDLFHTSPLTEQVSDVPLKTLSLIPTAEVPVTNMVRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ITDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G   +     E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGAAKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|254246060|ref|ZP_04939381.1| Seryl-tRNA synthetase, class IIa [Burkholderia cenocepacia PC184]
 gi|124870836|gb|EAY62552.1| Seryl-tRNA synthetase, class IIa [Burkholderia cenocepacia PC184]
          Length = 487

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+      N  
Sbjct: 223 ARLHRALAQFMIDTHTQQHGYTETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGAENTV 282

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 283 TQYLISTSEISLTNTVRESIVDGAALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 342

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 343 EMVQVVA-PETSYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 401

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 402 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 437


>gi|89890029|ref|ZP_01201540.1| seryl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89518302|gb|EAS20958.1| seryl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 423

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 106/340 (31%), Gaps = 73/340 (21%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E  +D +I   +L  +         G   +   G +    +     ++    G  EM VP
Sbjct: 145 ELVKDYDIIDFELGTKI-----TGAGFPVYKRKGARLQRALINYFLDKNTAAGYEEMQVP 199

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L +      +G+      +M  +   +   +   PT E  +T+++R  +   ++LP   
Sbjct: 200 HLVNEASGFGTGQLPDKEGQMYHVGVDD---LYLIPTAEVPITNLYRGDLLEAKDLPIAM 256

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                 FR E         G+ R  +F   +    +  P+ S  + + M V    I   L
Sbjct: 257 TGYTPCFRREAGSYGSDVRGLNRLHQFDKVEILRIEH-PDQSDSALDAMVVHVKNILEEL 315

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            L    +R   G +G                  F S    DF I S   D          
Sbjct: 316 ELPYRILRLCGGDLG------------------FTSTLTYDFEIYSTAQDKW-------- 349

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                                            +EV  +  F    S  +   F+ ++GK
Sbjct: 350 ---------------------------------LEVSSVSNFMAFQSNRLKLRFRNSEGK 376

Query: 309 DHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                 +    +   R++A ++E+     GI  P+ + P+
Sbjct: 377 TELAHTLNGSSLALPRILAGILENYQTESGIQIPEVLKPY 416


>gi|71906935|ref|YP_284522.1| seryl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|123627807|sp|Q47GH9|SYS_DECAR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71846556|gb|AAZ46052.1| seryl-tRNA synthetase [Dechloromonas aromatica RCB]
          Length = 427

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 12/225 (5%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E+  P L +A     +G+   + +++
Sbjct: 158 SGARFSLLKGGLARLHRALAQFMLDTHTAEHGYTELYAPYLVNAASLYGTGQLPKFEEDL 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            ++   +   +   PT E  +T+I R  I S   LP  F      FR E     R   G+
Sbjct: 218 FKVLRGDQDPLYLIPTAEVPVTNIVRDEILSAEALPLKFVCHTPCFRSEAGSGGRDVRGM 277

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +     + PE S  ++ ++      I  +L L    M   SG +G   +  
Sbjct: 278 IRQHQFDKVELVQV-VHPEKSAEAHEELTRQAEIILEKLELPYRRMALCSGDMGFSAAKT 336

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              E  + A     ++    +F  F        F +  +   +  
Sbjct: 337 YDLEVWLPAQNTYREISSCSNFGAFQARRMQARFRNDKNKTELCH 381


>gi|83592514|ref|YP_426266.1| anticodon-binding [Rhodospirillum rubrum ATCC 11170]
 gi|83575428|gb|ABC21979.1| Anticodon-binding [Rhodospirillum rubrum ATCC 11170]
          Length = 387

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/416 (12%), Positives = 105/416 (25%), Gaps = 89/416 (21%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
                G   WLP G   L  +   +R      G  E+  P L                  
Sbjct: 37  RATGGGNPYWLPRGLTLLRVIEGGLRAWLEAAGYAEIRTPPLV----------------- 79

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR- 151
                        +          +  +  +   + P   +++ +  R            
Sbjct: 80  ----------DGAFRGGTCAAH-RLVHALARRAEDGPLRLFELGVCHRGGPGEGLLGGAA 128

Query: 152 ------SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                    F   +A+ F            ++  +        G   I +R         
Sbjct: 129 FTPPAVGTAFTTDEAHVFCPADHCVAE-VARIVTASAATLAAFGFPVIGVR--------- 178

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                   A  GE               +    +   ++     E      +      ++
Sbjct: 179 -----WGTARAGEE--------CPLAAGARRAGYQPGLAAGPAGEGAPTGGSWLVFEVDD 225

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
               + P                       L +     G  G+   + +     G++   
Sbjct: 226 GAGGAWPCGG--------------------LTLEGEAIGGAGERAIL-LCHRLFGSLEAA 264

Query: 326 AAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             ++ +  DG    W    +AP ++ L    A + + R     I  R ++ G  V  D  
Sbjct: 265 VGLLLARGDG----WLAPWLAPQQVLLAGTAAEEAIVR----SIAGRFAEAGLRVGADLG 316

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            E +G + A A  LG P+   +G +      V +       +E + +E  +   S 
Sbjct: 317 AESLGVKRARARALGIPVVASLGPREAFSKTVTLSWPDDR-KETLYIEAALARLSA 371


>gi|89073400|ref|ZP_01159924.1| seryl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89050887|gb|EAR56361.1| seryl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 435

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  G+ A     +   + +      G  EM VP L +AD    +G+   +G+++
Sbjct: 160 TGARFIVMKGRFARLHRAIAQFMLDLHTEEHGYTEMYVPYLVNADSLFGTGQLPKFGEDL 219

Query: 94  L-------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
                   ++ D   + +   PT E  +T++ R  I    +LP         FR E    
Sbjct: 220 FHTQPLTEKVNDEEPRVLSLIPTAEVPVTNMMRDTITDEADLPVKMTAHTPCFRSEAGSY 279

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +       PE S  +  ++     ++   L L    +   +G +
Sbjct: 280 GRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEELTGHAEKVLQLLELPYRKVVLCTGDM 338

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G         E  V A     ++    +  DF        F
Sbjct: 339 GFGACKTYDLEVWVPAQETYREISSCSNMWDFQARRMQARF 379


>gi|170732292|ref|YP_001764239.1| seryl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|238688596|sp|B1JX98|SYS_BURCC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169815534|gb|ACA90117.1| seryl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 433

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+      N  
Sbjct: 169 ARLHRALAQFMIDTHTQQHGYTETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVDGAALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PETSYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|330810440|ref|YP_004354902.1| Serine--tRNA ligase (seryl-tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378548|gb|AEA69898.1| Serine--tRNA ligase (seryl-tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 426

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 68/204 (33%), Gaps = 10/204 (4%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A     +G+   + +++ +++   +  + 
Sbjct: 170 ARLHRALAQFMINLHVTEHGYEEAYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEIVDAKQLPIKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  ++   L L    +   +G +G         E  + +   
Sbjct: 290 QI-VEPSKSMEALESLTANAEKVLQLLELPYRTLALCTGDMGFSAVKTYDLEVWIPSQDK 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        F +
Sbjct: 349 YREISSCSNCGDFQARRMQARFRN 372


>gi|311070660|ref|YP_003975583.1| seryl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310871177|gb|ADP34652.1| seryl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 425

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +     E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNMHRDEILSGESLPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYDELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|302379863|ref|ZP_07268346.1| serine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302312341|gb|EFK94339.1| serine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 421

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 11/215 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    +   + +   ++ G  EM+ P L S      +G+   + ++M          
Sbjct: 168 KGARLERALMNFMVDLHTDKQGYTEMNTPVLMSPSAMRGTGQIPKFKEDMFYC---EKDD 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           M   PT E  +T++    I    +LP  +      FR E     R   G++R+ +F   +
Sbjct: 225 MYLAPTAEVPVTNLLSGEILEQGSLPIYYTAFTQCFRREAGSAGRDTRGLIRNHQFEKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTG 217
              F + P  S     K+  +   I   L +    +R  SG +G    ++++  V   + 
Sbjct: 285 MVKF-VEPSTSYDELEKLTNNAEEILQLLEIPYRVVRLCSGDLGFSSAMTYDIEVWMPSY 343

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              V  S         +   +       N      
Sbjct: 344 NRYVEISSCSNFEDFQARRANIRYRDENNKPQYVH 378


>gi|291532482|emb|CBL05595.1| seryl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 402

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +   ++ G  EM  P + + D    +G+   + ++M +L   
Sbjct: 140 FYKGLGARLERALINFMMDLHVDKQGYTEMLAPFIANKDSMTGTGQLPKFSEDMFKL--- 196

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 197 EGLDYYLVPTGEVPATNYHRDEILDGDKLPEYYSVYTACFRAEAGSAGRDTRGLIRQHQF 256

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +   F + PE S     KM  +   +   L +    ++  +G IG
Sbjct: 257 NKVEMIKF-VKPETSYDELEKMVNNAEEVLQLLEIPYHVVKLCTGDIG 303


>gi|260220448|emb|CBA27995.1| Seryl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 436

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 22/255 (8%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D E+  H  + +  G+  +      G    +  GQ A     +   + + Q    G  E 
Sbjct: 138 DFEVKDHVDLGQPLGLDFEMGVKLTGSRFTVMKGQIARLHRALAQFMLDTQTGEHGYTEC 197

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------RNDKAMIYGPTHEEVMTDIFRSHIK 123
             P + + D    +G+   + +++            ++ A+   PT E  +T+  R  + 
Sbjct: 198 YTPYIVNGDSLRGTGQLPKFEEDLFAAKKGGQDGGDDNTALYLIPTSEVPLTNFVRDVVS 257

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +  +LP         FR E     R   G++R  +F   +     + PE S  +   M  
Sbjct: 258 AESDLPIKLTAHTPCFRSEAGSGGRDIRGLIRQHQFDKVEMVQI-VHPEKSYEALEDMTR 316

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSE 235
               I  +LGL    M   +G +G   +     E  + A     ++    +   F     
Sbjct: 317 HAEAILQKLGLPYRVMSLCTGDMGFGAAKTYDLEVWLPAQNTYREISSVSNCEAFQARRL 376

Query: 236 NTDFDDIISLNSIVE 250
              F +    N +V 
Sbjct: 377 QARFKNAQGKNELVH 391


>gi|157414684|ref|YP_001481940.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047058|sp|A8FKH6|SYS_CAMJ8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157385648|gb|ABV51963.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747324|gb|ADN90594.1| Seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315932677|gb|EFV11607.1| seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 411

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSHGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    PE S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SI-TKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|56551882|ref|YP_162721.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761798|ref|ZP_04759884.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|67461650|sp|Q5NNV0|SYS_ZYMMO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56543456|gb|AAV89610.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373712|gb|EER63272.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 425

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 12/178 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + + Q  + G  E++ P L        +G+   + +++
Sbjct: 159 SGARFALMKGAMARLNRAIGQYMLDCQTEKNGFTEIAPPLLVRDHALFGTGQLPKFEEDL 218

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
               D         PT E  +T+I R  I   + LP  F  +   FR E     R   G+
Sbjct: 219 FHTTD----DRWLIPTAEVCLTNIVRESILDEKALPLRFTALTPCFRAEAGAAGRDTRGL 274

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           +R  +F   +  +   TPE S     +M     +I   L L    +   +G +G   +
Sbjct: 275 IRQHQFDKVEMVAI-TTPEQSTAEQMRMVECAEQILQNLKLPYRRVLLCTGDMGFSAT 331


>gi|291279934|ref|YP_003496769.1| histidyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754636|dbj|BAI81013.1| histidyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 415

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 141/419 (33%), Gaps = 51/419 (12%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    ++     G  E+ +P L+  +L+V       D   KEM    DR+   +   
Sbjct: 19  WHLIEDSFKKLFPTFGYEEIKLPILEKTELFVRGIGDTTDIVEKEMFTFKDRDGSYLSLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLP---FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
           P   E    + R+ I++    P     +Y     FR E RP+ G  R R+F      +F 
Sbjct: 79  P---EGTASVVRAFIENKLYEPPAIRKYYYYGPMFRRE-RPQKG--RFRQFYQIGIEAFG 132

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                       +F+ Y +  +   LK   +R E   IG                ++   
Sbjct: 133 SESPLLDAEI--IFLLY-KFLNDFDLKDF-LRMEINSIGC------PECRPKYRDKLIQY 182

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                  +  +     +   L  +  +  +            + D+L +      R ++ 
Sbjct: 183 FKNNYEDLCEDCKRRLEKNPLRILDCKVES--CKVIVKDAPIILDNLCDVCDNHFRKLKS 240

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA------VIESSHDGKGI 338
            ++  FG +Y++                +M +  +GA   V A      +I+        
Sbjct: 241 -YLNQFGVEYNVNPYIVRGLDYYVRTAFEMVTDKLGASSAVGAGGRYDGLIKELGGPDIP 299

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIY----ARLSKVGCDVFWDDMGEQIGSQFA- 393
               ++   ++  + IK  +++ +D  + IY       ++VG ++  +      G +   
Sbjct: 300 GIGFAIGVDRLVEL-IKMKNELKKDEVD-IYIITFEEFTEVGINISNELRD--AGFKVNL 355

Query: 394 -------VADLLGFP-----LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                   +++           +I+G   +S  K  +K   +G +  ++ +E+I +   
Sbjct: 356 GYDLGSIKSEMKKANRLNSRYVLIIGEDEISSGKFTLKDMNSGEQFKINRDEIIKFLQE 414


>gi|68171715|ref|ZP_00545070.1| Seryl-tRNA synthetase, class IIa [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67998859|gb|EAM85556.1| Seryl-tRNA synthetase, class IIa [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 406

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 14/212 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             ++  + +      G  E+S P L         G+   +  +  +  +         PT
Sbjct: 156 RALSNFMLDIHIKEFGYSEISHPILVHESAMYGVGQLPKFADDSFKTTEN----FRLIPT 211

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++  +   +  +LP  F      FR E     R   G+MR  +F   +  S  +
Sbjct: 212 SEVALTNLVSNMNINACDLPLRFTACSPCFRSEAGSAGRDTRGMMRQHQFNKVELVSI-V 270

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----HEFIVLADTGETQV 221
           T E S     +M      I  RL L    M   +G +G   S     E  + +     ++
Sbjct: 271 TEEQSAPELERMTQIAEEILKRLELPYRVMMLCTGDMGFSASITYDIEVWIPSQNQYREI 330

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               +   F     NT +  II+   + +   
Sbjct: 331 SSCSNCKAFQARRMNTKYTTIINNVKVSKFVH 362


>gi|68248725|ref|YP_247837.1| seryl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81336860|sp|Q4QP70|SYS_HAEI8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|68056924|gb|AAX87177.1| Seryl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 429

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA   ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  + A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWLPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|311028946|ref|ZP_07707036.1| seryl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 425

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 15/197 (7%)

Query: 28  RTGMIHQHSKG------IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLW 80
             G+I     G         +  LG +    +   + +   +  G  E+  P L +    
Sbjct: 146 ELGVIDFERAGKVTGSRFVFYRGLGARLERALFNFMLDLHVDEHGYTEVLPPYLVNRASM 205

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             +G+   + ++   +     +     PT E  +T++ R  I S   LP  +      FR
Sbjct: 206 TGTGQLPKFEEDAFLI---EKEDYFLVPTAEVPITNMHRDEILSGDQLPINYAAFSACFR 262

Query: 141 DEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            E     R   G++R  +F   +   F + PE S     K+  +  ++   LGL    + 
Sbjct: 263 SEAGSAGRDTRGLIRQHQFNKVELVKF-VKPEESYEELEKLTGNAEKVLQLLGLPYRVLS 321

Query: 197 AESGPIGGDLSHEFIVL 213
             +  +G   + ++ + 
Sbjct: 322 MCTADLGFTAAKKYDIE 338


>gi|296415556|ref|XP_002837452.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633324|emb|CAZ81643.1| unnamed protein product [Tuber melanosporum]
          Length = 444

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 60/180 (33%), Gaps = 6/180 (3%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD- 98
           Y     G      +     E     G   +  P     D+  ++ + + +  E+ ++ D 
Sbjct: 170 YFLKQWGVFLNQALINYGLEFLASKGYTPLQTPQFMLKDMMAKTAQLEQFDDELYKVVDG 229

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                     T E+ ++ +        + LP  +      +R E     +  +G+ R  +
Sbjct: 230 EEKNDKYLIATSEQPISALHADEWLQQKELPIRYAGFSSCYRREAGAHGKDAWGIFRVHQ 289

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +       PE S  ++++M       +  L +    +   SG +    + ++ + A
Sbjct: 290 FEKIE-QFVITDPEKSWEAFDEMINYSEEFYKSLNIPYRVVTIVSGALNNAAAKKYDLEA 348


>gi|183983647|ref|YP_001851938.1| glycyl-tRNA synthetase GlyS [Mycobacterium marinum M]
 gi|183176973|gb|ACC42083.1| glycyl-tRNA synthetase GlyS [Mycobacterium marinum M]
          Length = 463

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 120/381 (31%), Gaps = 74/381 (19%)

Query: 84  GRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           G++    +  M+       +        +   T + +  +       S +  PF   QI 
Sbjct: 134 GQWTEPREFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIG 193

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ P   + R+REF   +   F + P  +K  +     + L+ +  LG+ +  +R
Sbjct: 194 KSFRNEITPGNFIFRTREFEQMEMEFF-VEPSTAKEWHQYWIDTRLQWYVDLGIDAENLR 252

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
               P    LSH      D      F    + +    +  TDFD                
Sbjct: 253 LFEHP-KEKLSHYSDRTVDIEYKFGFVGNPWGELEGVANRTDFD--------------LS 297

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +     E  F    E+ R +   IE                                 
Sbjct: 298 THSKHSGTELSFYDQVEDVRYTPYVIE--------------------------------- 324

Query: 317 YGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRD 363
              G  R   A +  ++                 +     +AP K +++ +  H      
Sbjct: 325 PAAGLTRSFMAFLIDAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSP 383

Query: 364 ACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               + A L K    D  +DD G  IG ++   D +G P  V V    + D  V ++ R 
Sbjct: 384 KARDLAAELRKYWNID--FDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDDAVTVRERD 440

Query: 423 TGIREDMSLEEVINYASHRFS 443
              +E + + +V +Y + R  
Sbjct: 441 AMTQERIGIAKVADYLAPRLK 461


>gi|315225631|ref|ZP_07867440.1| glycyl-tRNA synthetase beta subunit [Capnocytophaga ochracea F0287]
 gi|314944448|gb|EFS96488.1| glycyl-tRNA synthetase beta subunit [Capnocytophaga ochracea F0287]
          Length = 516

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 109/345 (31%), Gaps = 70/345 (20%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   Q    FR+E+  R  + R REF   +   F     
Sbjct: 219 TAQGIFVNFLNVQKSGRMKIPFGIAQTGKAFRNEIVARQFIFRMREFEQMEMQFFIKPGT 278

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +                                                     + + 
Sbjct: 279 QQQ---------------------------------------------------WYEYWK 287

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +  +    +      +      +  A YA  +     +      E + + +R       F
Sbjct: 288 ETRLKWHLSLGMGEENYRYHPHEKLAHYADAACDIEFRFPFGFKELEGIHSR-----TNF 342

Query: 289 YFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------- 337
             G   KYS      F   + K +   +    IG  R+  AV  +S   +          
Sbjct: 343 DLGNHEKYSGKKMQYFDPEENKSYTPYVLETSIGLDRMFLAVFSNSLQEEALEGGDTRTV 402

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +  P  +AP K++++ +   D    +  E+I   L K   +V +D+    +G ++   D 
Sbjct: 403 LRLPFVLAPTKVAVLPLLKKD-GLPEVAEQIVNEL-KYDFNVAYDEKDA-VGRRYRRQDA 459

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P  V V  + + D+ V ++HR T  +  +++ E+ N  +   
Sbjct: 460 VGTPFCVTVDHQTLEDNTVTLRHRDTMEQVRIAIPELRNTIAKEV 504


>gi|258593676|emb|CBE70017.1| Seryl-tRNA synthetase (Serine--tRNA ligase) [NC10 bacterium 'Dutch
           sediment']
          Length = 428

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 9/163 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +      G  E+  P L +A+    +G+   +G+E+ +  D     +
Sbjct: 170 GARLERALIGFMLDLHGKEHGYTEILPPLLVNAEAMRGTGQLPKFGEELFKTKDEG---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I     LP ++      FR E     +   G+MR  +F   + 
Sbjct: 227 YMIPTAEVPVTNLHREEILPPGTLPLSYVAYTPCFRREAGSYGKDTRGLMRQHQFNKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                 PE S  +  +M      +  RLGL    +   +  +G
Sbjct: 287 VKL-AEPERSYEALEEMTRHAETVLQRLGLPYRTVALCTTDLG 328


>gi|303288834|ref|XP_003063705.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454773|gb|EEH52078.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 503

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 138/449 (30%), Gaps = 65/449 (14%)

Query: 28  RTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           R  MI  Q  KG   + P   +  + +    R+     G  E   P L++ +L+V     
Sbjct: 77  RKKMIDLQPPKGTRDFAPEEMRVRNWLFGHFRDVARTFGFEEWDAPVLETEELYVRKAG- 135

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +    ++    D+ ++ +   P        +     KS   LP  ++ I   +R E R  
Sbjct: 136 EEITTQLYNFEDKGNRRVALRPELTPSFARLILQQGKS-LALPAKWFAIGQCWRYE-RMT 193

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPI-- 202
            G  R RE    +     +    ++     +  + +  F RLG+    + ++  S  +  
Sbjct: 194 RG--RRREHYQWNMDIVGVDGVEAEAE---LLAAIVEFFTRLGITSADVGLKVSSRKVLQ 248

Query: 203 --------------------------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                                       +   E +      E  +      M+     + 
Sbjct: 249 AVLTRYDVPEASFAPVCVVVDKIEKLPREKIVEELAGLGVTEDAIDGILAAMEMKTIDDL 308

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT---- 292
                  +           +A      +  +FD+          G+        G     
Sbjct: 309 AALLGADADAVKDLTTLFSHAEAYGYADWLVFDASVVRGLSYYTGVVFEGFDRAGELRAI 368

Query: 293 ----KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
               +Y   + A      G+D  +    +G          I    + +G++ P+S+    
Sbjct: 369 CGGGRYDKLLGAL----GGEDRSMVGFGFGDAV-------IMELVNDRGLL-PESLK-TG 415

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---DDMGEQIGSQFAVADLLGFPLQVI 405
                +       R A   I ARL K G  V     D  G++    F  A+  G    V+
Sbjct: 416 CVDDLVYPMTAALRPAAMAIAARLRKAGRRVDLVIED--GKKPKWVFKHAERSGAARVVL 473

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G K  ++ KV +K   +    D+  E +
Sbjct: 474 LGEKEWAEGKVRVKDLASREETDVDPESL 502


>gi|85712402|ref|ZP_01043452.1| seryl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85693845|gb|EAQ31793.1| seryl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 430

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 19/247 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQNR 63
           P L   P+D    +  L    GM  + +    G    +  G+ A     +   + +    
Sbjct: 130 PQLDFEPKDHVELAEAL--AKGMDFEAAAKLTGARFVVMRGKIARLHRALTQFMLDTHTE 187

Query: 64  T-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG--PTHEEVMTDIFRS 120
             G  E  VP L + D    +G+   +GK++  +    ++ +     PT E  +T++ R 
Sbjct: 188 AHGYAETYVPYLVNHDSLYGTGQLPKFGKDLFHIQGETEEQIPLSLIPTAEVPLTNLARD 247

Query: 121 HIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            I     LP         FR E     R   G++R  +F   +   +   PE S  +  +
Sbjct: 248 EIFDEAELPVKLTAHTPCFRSEAGSHGRDTRGLIRQHQFDKVE-LVWLAHPEQSMDALEQ 306

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPI 232
           +      I  +LGL    +   +G +G   +     E  + A     ++    +  DF  
Sbjct: 307 LTQHAETILQKLGLAYRKVLLCTGDMGFGATKTYDLEVWLPAQNTYREISSCSNMGDFQA 366

Query: 233 PSENTDF 239
                 F
Sbjct: 367 RRMQARF 373


>gi|303257971|ref|ZP_07343980.1| serine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000048|ref|ZP_08323743.1| serine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859314|gb|EFL82396.1| serine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329572932|gb|EGG54552.1| serine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 433

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 81/253 (32%), Gaps = 20/253 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D EI  H  +    G+         G       GQ A     +   + +      G  E 
Sbjct: 133 DFEIKDHVDVGGPLGLDFDVGAKLAGTRFCFMKGQVARLHRALAQFMLDTHTQENGYTEC 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             P + + +  + +G+   + +++        +   +     PT E  +T+  R  +   
Sbjct: 193 YTPYIANQETLIGTGQLPKFEEDLFAAKKGGQEGEGEIFYLIPTSEVTLTNSVRGQMLKE 252

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            +LP         FR E     +   G++R  +F   +     + PE S     +M V  
Sbjct: 253 SDLPIKITAQTPCFRSEAGSYGKDTRGMIRQHQFEKVEMVRI-VKPEESYKHLEEMVVCA 311

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I  +LGL    +   +G +G   +     E  + A     ++    +   F      T
Sbjct: 312 EGILQKLGLPYRVITLCTGDMGFGSAKTYDLEVWIPAQNTYREISSVSNCEAFQARRMQT 371

Query: 238 DFDDIISLNSIVE 250
            F +       V 
Sbjct: 372 RFKNAQGKTEYVH 384


>gi|289578137|ref|YP_003476764.1| glycyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527850|gb|ADD02202.1| glycyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 462

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 148/449 (32%), Gaps = 66/449 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +   N+  +  +   Q     + +    L + ++WV SG   S+      L 
Sbjct: 34  WDYGPLGVELKSNIKRMWWKRFIQQSPYNVGIDSAILMNPEVWVASGHVSSFSD---PLM 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ----LKFRDELR------PRF 147
           D  +    +          +   +IK  + L  +         ++F  E +         
Sbjct: 91  DCKECKSRFRAD------QLIEDYIK-EKELNISIEGWTNEQLMEFIKEHKVPCPKCGAH 143

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGP 201
                R+F +       +T +     Y +      +FV++  +          +    G 
Sbjct: 144 NFTNIRKFNLMFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRT---TRKKIPFGIGQ 200

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IG    +E         T+ F   +   F  P E+ ++ +      +           + 
Sbjct: 201 IGKSFRNEITPGNFIFRTREFEQMELEFFCKPGEDMEWFNYWRKYCMDWLLEFGLKKENL 260

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD----- 306
              +   + L      +    ++ + F FG          T + L       G D     
Sbjct: 261 RFRDHKKEELSHYSTATT---DIEYNFPFGWGELWGIANRTDFDLRQHMEHSGVDLSYMD 317

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINI 354
              G+ +        +G  R++ A +  +++ +          +    ++AP K +++ +
Sbjct: 318 PVTGEKYIPYCIEPSVGVDRLMLAFLIDAYEEEELEDGETRVVLRLHPALAPIKAAVLPL 377

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D 
Sbjct: 378 SKK---LSENAYKLYDQLRNKFV-VDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDH 432

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V I+ R T  +  + +EEV  Y   R +
Sbjct: 433 CVTIRDRDTMEQVRVKIEEVEKYLEERLN 461


>gi|220929210|ref|YP_002506119.1| glycyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|254781875|sp|B8I2Z6|SYG_CLOCE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|219999538|gb|ACL76139.1| glycyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 462

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 119/367 (32%), Gaps = 75/367 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++    + R +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVQRTTRRKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+RE                              F ++ L+                
Sbjct: 214 FTFRTRE------------------------------FEQMELEFFC------------- 230

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                  + G   +   K + DF      +      +L     +       ++   + + 
Sbjct: 231 -------EPG-KDLEWFKYWKDFCYNWLLSLNMKKENLKLRDHEKEELSHYSNATTDIEF 282

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGAD-GKDHYVQMGSYGIGAMRVV 325
                  +     GI     F      +      ++      + +        +GA RV 
Sbjct: 283 LFPFGWGELW---GIADRTDFDLKQHMTHSKDDLSYFDPTTNEKYVPYCIEPSLGADRVT 339

Query: 326 AAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            A +  ++D +          + +  ++AP KI+++ +        +  +K+Y  L+K  
Sbjct: 340 LAFLCEAYDEEEVAEGDVRTVLRFHPALAPVKIAVLPLSKK---LGEDADKVYQMLAKS- 395

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +D+ G  IG ++   D +G P  +      + D  V I+ R T  +  + +E++  
Sbjct: 396 YYCEYDETG-SIGKRYRRQDEIGTPYCITFDFDSLEDKSVTIRDRDTMQQVRIKIEDLAA 454

Query: 437 YASHRFS 443
           Y  ++F 
Sbjct: 455 YFENKFE 461


>gi|116689002|ref|YP_834625.1| seryl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|162218059|ref|YP_620385.2| seryl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|166200606|sp|A0K5F5|SYS_BURCH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116647091|gb|ABK07732.1| seryl-tRNA synthetase [Burkholderia cenocepacia HI2424]
          Length = 433

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+      N  
Sbjct: 169 ARLHRALAQFMIDTHTQQHGYTETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVDASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PETSYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|105892247|gb|ABF75412.1| seryl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
          Length = 471

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+      N  
Sbjct: 207 ARLHRALAQFMIDTHTQQHGYTETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGAENTV 266

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 267 TQYLISTSEISLTNTVRESIVDASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 326

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 327 EMVQVVA-PETSYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 385

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 386 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 421


>gi|239994319|ref|ZP_04714843.1| seryl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 433

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 12/202 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYG 107
             +   + +      G  EM VP L +AD    +G+   +G+++          + +   
Sbjct: 175 RAIAQFMLDTHTQEHGYQEMYVPYLVNADSLYGTGQLPKFGEDLFHTKPATEEGQGLSLI 234

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T+I R  I   + LP         FR E     R   G++R  +F   +    
Sbjct: 235 PTAEVPLTNIARDEILDAKTLPVKMTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL 294

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGET 219
            + PE S  +   +      I  +L L    +   +G +G         E  + A     
Sbjct: 295 -VKPEESFDALEALTGHAEVILQKLELPYRKVLLCTGDMGFGACKTYDLEVWLPAQNTYR 353

Query: 220 QVFCSKDFMDFPIPSENTDFDD 241
           ++    + +DF        F +
Sbjct: 354 EISSCSNMLDFQARRMQARFRN 375


>gi|327398592|ref|YP_004339461.1| Histidyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181221|gb|AEA33402.1| Histidyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 410

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 128/424 (30%), Gaps = 51/424 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   K    +  + RE     G  E+  P L+   L+  S     D   KEM  
Sbjct: 6   GFKDILPQDIKKWQKLEKVARETLESFGYKEIRTPILEKTSLFARSVGETTDIVEKEMYI 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPF-TFYQIQLKFRDELRPRFGVMRSR 153
             D++ +++   P   E      R+ I ++    PF  +Y I   FR E RP+ G  R R
Sbjct: 66  FLDKSGESVTLRP---EGTAGTVRAFIDNHLENYPFKKYYYIGPMFRYE-RPQKG--RLR 119

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGDLS 207
           +F       F +           +    L    +L +  + +        +  P      
Sbjct: 120 QFHQIGIEVFGIDNPAVDAEVVLVDKIML---DKLNISDLRIEINNIGCPDCRPEYSKRL 176

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK- 266
            E+  L   GE    C +     P+   +   +    +     +       +   H EK 
Sbjct: 177 KEYFQLH-KGELCDDCRRRLDRNPLRILDCKNNTCSQIAKGAPKIIEFVCDSCKNHYEKV 235

Query: 267 -----LFDSLPENKRVSARGIEVGHIF-------YFGTKYSLPMSATFKG--ADGKDHYV 312
                      E      RG++    F         G + ++     +            
Sbjct: 236 KNNLTALGIEFEENPHLVRGLDYYTKFVFEIITDKLGAQGTVSAGGRYDNLVEQLGGKPT 295

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +  G  R++  + E    G               + N+   D    D   K+   L
Sbjct: 296 SGIGFASGCERLINLMDEDETQG-----------IDYYIANL-DEDVYAMDIARKL--SL 341

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +     V ++    +  S    AD +     VIVG    +   + +K      +E+  + 
Sbjct: 342 TGRSVYVEYESRSLK--SMLKKADKMNARFVVIVGENEKNKGIIIVKDMEDSTQEEKQVN 399

Query: 433 EVIN 436
           + I 
Sbjct: 400 KFIE 403


>gi|237715588|ref|ZP_04546069.1| seryl-tRNA synthetase [Bacteroides sp. D1]
 gi|262408597|ref|ZP_06085143.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294647519|ref|ZP_06725099.1| serine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294808139|ref|ZP_06766907.1| serine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|298481433|ref|ZP_06999625.1| serine--tRNA ligase [Bacteroides sp. D22]
 gi|229444297|gb|EEO50088.1| seryl-tRNA synthetase [Bacteroides sp. D1]
 gi|262353462|gb|EEZ02556.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292637131|gb|EFF55569.1| serine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294444646|gb|EFG13345.1| serine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086896|emb|CBK68419.1| seryl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
 gi|298272297|gb|EFI13866.1| serine--tRNA ligase [Bacteroides sp. D22]
          Length = 424

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 117/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 EEKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++      T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRNAEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|332881107|ref|ZP_08448775.1| glycine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681019|gb|EGJ53948.1| glycine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 516

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 108/345 (31%), Gaps = 70/345 (20%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   Q    FR+E+  R  + R REF   +   F     
Sbjct: 219 TAQGIFVNFLNVQKSGRMKIPFGIAQTGKAFRNEIVARQFIFRMREFEQMEMQFFIKPGT 278

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +                                                     + + 
Sbjct: 279 QQQ---------------------------------------------------WYEYWK 287

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +  +    +      +      +  A YA  +     +      E + + +R       F
Sbjct: 288 ETRLKWHLSLGMGEENYRYHPHEKLAHYADAACDIEFRFPFGFKELEGIHSR-----TNF 342

Query: 289 YFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------- 337
             G   KYS      F   D +     +    IG  R+  AV+ +S   +          
Sbjct: 343 DLGNHEKYSGKKMQYFDPEDNQSFTPYVLETSIGLDRMFLAVLSNSLQEETLEGGDTRTV 402

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +  P  +AP K++++ +   D    +  E+I   L K   +V +D+    +G ++   D 
Sbjct: 403 LRLPFVLAPTKVAVLPLLKKD-GLPEVAEQIVNEL-KYDFNVAYDEKDA-VGRRYRRQDA 459

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P  V V  + + D+ V ++HR T  +  +++ E+    +   
Sbjct: 460 VGTPFCVTVDHQTLEDNTVTLRHRDTMEQVRIAIPELRAAIAKEV 504


>gi|298372889|ref|ZP_06982879.1| serine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275793|gb|EFI17344.1| serine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 424

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 112/345 (32%), Gaps = 73/345 (21%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + P DA +   +L  R  +I           G   +   G +    +     +E    G 
Sbjct: 136 DMPTDA-LPHWELAKRYDLIDFELGVKITGAGFPVYKGKGARLQRALINFFLDEARNAGY 194

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + + D    +G+      +M  +   +   +   PT E  +T+IFR  I + +
Sbjct: 195 LEIEPPYVVNTDSGYGTGQLPDKEGQMYHVTVDD---LYLIPTAEVPVTNIFRDVILAEK 251

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     +   G+ R  +F   +    D  PE S  S ++M     
Sbjct: 252 DLPCKLTAYSACFRREAGSYGKDVRGLNRLHQFNKVEIVRID-KPEHSYDSLDEMVRYVE 310

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +  +L L    +R   G +    S  F         +VF +       + S +    + 
Sbjct: 311 NLICKLELPYRILRLCGGDMSFTSSLTFDF-------EVFSAAQKRWLEVSSVSN--FES 361

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              N +  ++      T   H                           G+  +LP     
Sbjct: 362 YQANRLKCRYKTAEGKTELCHTLN------------------------GSALALP----- 392

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                               R+VAA++E++    GI  P ++ P+
Sbjct: 393 --------------------RIVAALLENNQTPNGIRIPKTLVPY 417


>gi|256820207|ref|YP_003141486.1| glycyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581790|gb|ACU92925.1| glycyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 516

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 109/345 (31%), Gaps = 70/345 (20%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   Q    FR+E+  R  + R REF   +   F     
Sbjct: 219 TAQGIFVNFLNVQKSGRMKIPFGIAQTGKAFRNEIVARQFIFRMREFEQMEMQFFIKPGT 278

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             K                                                     + + 
Sbjct: 279 QQK---------------------------------------------------WYEYWK 287

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +  +    +      +      +  A YA  +     +      E + + +R       F
Sbjct: 288 ETRLKWHLSLGMGEENYRYHPHEKLAHYADAACDIEFRFPFGFKELEGIHSR-----TNF 342

Query: 289 YFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------- 337
             G   KYS      F   + K +   +    IG  R+  AV  +S   +          
Sbjct: 343 DLGNHEKYSGKKMQYFDPEENKSYTPYVLETSIGLDRMFLAVFSNSLQEEALEGGDTRTV 402

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +  P  +AP K++++ +   D    +  E+I   L K   +V +D+    +G ++   D 
Sbjct: 403 LRLPFVLAPTKVAVLPLLKKD-GLPEVAEQIVNEL-KYDFNVAYDEKDA-VGRRYRRQDA 459

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P  V V  + + D+ V ++HR T  +  +++ E+ N  +   
Sbjct: 460 VGTPFCVTVDHQTLEDNTVTLRHRDTMEQVRIAIPELRNTIAKEV 504


>gi|222085788|ref|YP_002544318.1| seryl-tRNA synthetase (serine-tRNA ligase) protein [Agrobacterium
           radiobacter K84]
 gi|254782998|sp|B9JEH1|SYS_AGRRK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|221723236|gb|ACM26392.1| seryl-tRNA synthetase (serine-tRNA ligase) protein [Agrobacterium
           radiobacter K84]
          Length = 427

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P +   +    +G+   + ++  R    +       PT
Sbjct: 176 RALGQFMLDLHTSEHGYTEVSSPLMVRDEAMFGTGQLPKFAEDSFRTTGGH----WLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I     LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVTLTNLVSGDILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQV 221
             E S   + +M      +  RLGL    M   +G +G         E  +       ++
Sbjct: 291 DAESSIAEHERMTACAEEVLKRLGLHYRVMTLSTGDMGFGARKTYDLEVWLPGQDTYREI 350

Query: 222 FCSKDFMDFPIPSENTDF 239
                  DF     N  +
Sbjct: 351 SSCSVCGDFQARRMNARY 368


>gi|289548264|ref|YP_003473252.1| histidyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289181881|gb|ADC89125.1| histidyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 408

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 134/426 (31%), Gaps = 44/426 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
            +  +G +  L    +    V   +RE   R    E+ +P ++ A+L+  S     D   
Sbjct: 4   FRTVRGFHDILGEDLRKFRRVTQTVREVLRRFNFEEVILPVVEYAELFQRSIGDFTDIVQ 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEM    DR  + +   P         +  +           +     FR E RP+ G  
Sbjct: 64  KEMFVFPDRKGRLLALRPEGTASAVRAYLQNRLYTLRPYVKLFYEGPMFRYE-RPQAG-- 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-----PIGGD 205
           R R+F    A  F            K+      I   LG+ ++      G     P+  +
Sbjct: 121 RYRQFHQIGAEVFGSEDPLVDAEVIKIVHL---ILKELGIPAVVEINSLGCKVCRPVYRE 177

Query: 206 LSHEF-----IVLADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
              +F       L D   E +       +D  + +      +   +   + +    +  +
Sbjct: 178 ALSKFLESVAGHLCDVCMERKDKNPLRVLDCKVTTCQEAVKEAPRMLDYLCEDCKKHHHS 237

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
              + E +            RG++      F    S  ++ T   A G+  Y+     G 
Sbjct: 238 VKRYLEVMEVPY-RENPHLVRGLDYYTRTVF-EAVSETLNITII-AGGRYDYLVEELGGP 294

Query: 320 GA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                     +  ++ ++    + + + +   V PF               +    +   
Sbjct: 295 PTPAVGFAVGVERLSMLVSVQEEEEPLYF---VIPF-----------GQVEEYALMVADF 340

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V        +  Q  +A+       VIVG    + S+V IK   TG +  + L
Sbjct: 341 LRSQGKRVEISYKKGSLKKQLELANKFKARYAVIVGEDEKNSSEVSIKDLATGEQRRVKL 400

Query: 432 EEVINY 437
           E + +Y
Sbjct: 401 EALKDY 406


>gi|291482383|dbj|BAI83458.1| seryl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 444

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +     E+  P + +      +G+   + ++  ++ 
Sbjct: 182 FVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDAFKI- 240

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 241 --REEDYFLIPTAEVPITNMHRDEILSGDSLPINYAAFSACFRSEAGSAGRDTRGLIRQH 298

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 299 QFNKVELVKF-VKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 357


>gi|284931433|gb|ADC31371.1| glycyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 463

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 115/354 (32%), Gaps = 70/354 (19%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++ +++ R  LPF   QI   FR+E+ P   + R+REF   +   F
Sbjct: 166 YLRPETAQGIFINFKNILRTQRMKLPFGVAQIGKAFRNEITPGNFIFRTREFEQFEIEYF 225

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
            L PE  K      F  Y+       +  + +           + E I   +  + ++  
Sbjct: 226 -LEPELVKE----KFDWYINQIEDFLINKLLI-----------NKELIKRHEIAKDELAH 269

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                                       +   ++    + +   FD              
Sbjct: 270 YSSRTI-----------------DFQFNFPHGWSELWGLAHRGNFDLT------------ 300

Query: 284 VGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSH--------- 333
             H    G       +  +    +       +    +G  R++ A++ + +         
Sbjct: 301 -AHSNQSGK------TLDYHNEIEKTKIIPDVIEPSLGIERILYAIVCAHYHVEQLADND 353

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMGEQIGS 390
             + +  P S++P++++++ +       +D   ++Y  L K+        +D  G  IG 
Sbjct: 354 SREVLRLPISLSPYQLAILPLVNK---LKDQAYQLYLELLKISDTNLRFDFDSAG-SIGK 409

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++   D +G    +      +    V I+ R +  +  + + E+  +  +    
Sbjct: 410 RYRRYDAIGTKYCLTYDFDSLEKGIVTIRERDSMEQIKLPISELKQWIRNNLHE 463


>gi|226951584|ref|ZP_03822048.1| seryl-tRNA synthetase; also charges selenocystein tRNA with serine
           [Acinetobacter sp. ATCC 27244]
 gi|226837687|gb|EEH70070.1| seryl-tRNA synthetase; also charges selenocystein tRNA with serine
           [Acinetobacter sp. ATCC 27244]
          Length = 423

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 19/239 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADTLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPITNFVRDEIIDADRL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYSAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPEHSMPALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              LGL    +    G +G         E  V +     ++    +  DF        +
Sbjct: 310 LQALGLPYRKILLCGGDMGFGAVKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARY 368


>gi|169856615|ref|XP_001834964.1| glycine-tRNA ligase [Coprinopsis cinerea okayama7#130]
 gi|116503951|gb|EAU86846.1| glycine-tRNA ligase [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQV 360
           ++    +     G  R++  ++E S         +G++  P  VAP K+ ++ + A ++ 
Sbjct: 490 REFVPNVIEPSFGLGRILYCLLEHSFWAREQDIERGVLSLPPLVAPTKVLIVPLSAREE- 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I A+L K G     DD    IG ++A  D LG P  + +    V +  V I+ 
Sbjct: 549 FDPLVQEITAKLRKAGVFSRVDDSNTSIGKRYARNDELGTPYGLTIDFASVQNRTVTIRE 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R T  +    ++EV+   +   + N
Sbjct: 609 RDTMDQRIGKIDEVVATVTDLVNGN 633



 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 93  MLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGV 149
           M +  +           P   +     F   ++ +   +PF   Q+   FR+E+ PR G+
Sbjct: 202 MFQSSIGPTGQHKGYLRPETAQGHFLNFNRLLEYNNGRVPFASAQVGRSFRNEISPRAGL 261

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +R REF M +   +    + S  S+  + 
Sbjct: 262 LRVREFTMAEVEHYVDPDDKSHPSFKDVR 290



 Score = 38.4 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G     N+ +  R+      G +E+    +  + ++  SG    +   M
Sbjct: 38 AGLYDYGPPGSALQANIISEWRKHFIIEEGMLEVDTTIMTPSAVFETSGHVARFADWM 95


>gi|89096141|ref|ZP_01169034.1| histidyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89088995|gb|EAR68103.1| histidyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 430

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 142/439 (32%), Gaps = 68/439 (15%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M +Q+ KG   +LP  +     +   + +   + G   +  P L   +L   + G     
Sbjct: 4   MNYQNVKGTKDYLPEEEIVRRRIQRELEDVFIQYGCKPLETPILNYTELLASKYGGGAEI 63

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +EM  L+DR  + +                +      LPF  Y+I   FRD        
Sbjct: 64  LEEMYTLSDRGGRDLALRYDLTIPFAKAAAMNPGIR--LPFKRYEIGRVFRD---GPIKT 118

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R REF            + ++     M    L  F R+GL  I ++  +  +   +  E
Sbjct: 119 GRLREFTQCAVDIAGADSQLAEAELMVM---ALDAFQRIGLD-ITIQYNNRKLLSGMLQE 174

Query: 210 FIVLADTGETQVF---------CSKDFMDFPIPSENTD----FDDIISLNSIVEQWTAPY 256
           F VL +     +            K   +        +        IS  +I +      
Sbjct: 175 FGVLEEKRNEAILVLDKLEKAGWQKVSEELAAKGIGYEAIQRIAGFISDKNIGKLAYYEE 234

Query: 257 AATSDVHNEKLFDSLPENKRVSA---------------RGIEV--GHIFYF--------- 290
               +VH ++    L E +                   RG+++  G I+           
Sbjct: 235 MEDKNVHLKEGLQELMELEGYLNYLNSSRKAVFNPFLARGLDIYTGTIYEIFLTDRSLAS 294

Query: 291 ----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               G +Y   +   F G+ GK       S+G+ A  +  AV +S        W +  + 
Sbjct: 295 SIGSGGRYDNAIG-GFIGS-GKKVATVGISFGLDA--IFTAVSQSLS------WTEREST 344

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
               +I I    +        +   L + G  V  +    +I      A+       +++
Sbjct: 345 ADYFIIPINTPKESLA-----LAQYLREKGWRVELELGSRKISKALERANKENIRKVILL 399

Query: 407 GSKFVSDSKVEIKHRLTGI 425
           G + VS+++ ++K   TG 
Sbjct: 400 GEEEVSNNQYKVKDMETGE 418


>gi|269219508|ref|ZP_06163362.1| glycine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211087|gb|EEZ77427.1| glycine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 465

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/459 (13%), Positives = 131/459 (28%), Gaps = 88/459 (19%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEM---- 93
           + + PLG +  +N+          +    + +    +   ++WV SG    +   +    
Sbjct: 36  WDYGPLGVELKENIKRQWWRHMVTSRDDVVGLDSSIILPREVWVASGHVGVFNDPLTECL 95

Query: 94  -----LRLADRNDKAMIYGPTHEEVMTDIF---------RSHIKSYRNLPFTFYQIQLKF 139
                 R+    ++        +    ++          R      R+            
Sbjct: 96  SCHKRFRVDQIQEEFAAKKGIEDPDSVELAEIACGNCGTRGQWTEPRDFNMMLKTYLGPV 155

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRA 197
            DE     G+   R             PE ++  +            R   G+       
Sbjct: 156 EDES----GLHYLR-------------PETAQGIFVDFQNVMTSARKRPPFGI------- 191

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             G IG    +E         T+ F   +   F  P  + ++                  
Sbjct: 192 --GQIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGTDEEWHQYWIDERRNWYVGLGID 249

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKG 304
             +    E       +    S R +++ + F F              T + L       G
Sbjct: 250 PENLRLYEH---PQEKLSHYSKRTVDIEYRFGFRGSDWGELEGIANRTDFDLSTHTKHSG 306

Query: 305 AD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDS 343
            D        G+     +     G  R + A +  ++                 +     
Sbjct: 307 KDLSYFDQASGERWIPYVIEPAAGLTRSLMAFLVEAYAEDEAPNAKGGVDKRVVLRLDPR 366

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           ++P K +++ + + D+       ++ A L K   +V +DD G  +G ++   D +G P  
Sbjct: 367 LSPVKAAVLPL-SRDERLSPLARELAAELRK-NWNVDFDDAGA-VGRRYRRQDEIGTPFC 423

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + V    + D  V I+ R T  +  + + +V    + + 
Sbjct: 424 ITVDFDSLEDRAVTIRDRDTMEQVRLPIADVEGRLAAKL 462


>gi|182412822|ref|YP_001817888.1| glycyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|177840036|gb|ACB74288.1| glycyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 509

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 100/330 (30%), Gaps = 68/330 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LPF   QI   FR+E+ PR  + RSREF   +   F          + +           
Sbjct: 232 LPFGIAQIGKSFRNEITPRNFIFRSREFEQMEMEYFIHEDADWAKCHQEWID-------- 283

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                   R     IG   SH     +   E   F SK  +D           ++  + +
Sbjct: 284 ------WCRNWLISIGLPESH-LSFFSHPKEKLAFYSKGTVDIMFK-YPFGVQELWGIAA 335

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                   +A  S    E   +                                      
Sbjct: 336 RGNYDLNQHAQASGKSQEYFDEPSK----------------------------------- 360

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINI 354
           K     +    +G  R+  AV+ +++                 +     +AP K++++ +
Sbjct: 361 KRFVPHVIEPAVGVDRIFLAVLCAAYTEDEAPDEKGKMEKRIVLKLSPRIAPVKVAVLPL 420

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD- 413
             + +      + +YA+L +     F+DD G  IG ++   D +G P  V +    +   
Sbjct: 421 LKNKEQLTQRAKALYAKLKRK-YAAFYDDGGA-IGRRYRRQDEIGTPWCVTIDFDTIEKP 478

Query: 414 -SKVEIKHRLTGIREDMSLEEVINYASHRF 442
                ++ R +  +  ++  E+      + 
Sbjct: 479 GDTFTLRERDSMKQSRITEAELFALLDEKV 508


>gi|238792410|ref|ZP_04636044.1| Seryl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238728336|gb|EEQ19856.1| Seryl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 430

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 21/239 (8%)

Query: 12  QENPRDAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
           +    D E+  H  +     G+    +    G    +  GQ A     ++  + +    +
Sbjct: 128 EPRKYDFEVRDHVSLGEMTGGLDFAAAVKLTGARFVVMKGQIARMHRALSQFMLDLHTEK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFR 119
            G  E  VP L +      +G+   +G+++       +++        PT E  +T++ R
Sbjct: 188 HGYQEAYVPYLVNHATLYGTGQLPKFGEDLFHTKPLEEESDSSNYALIPTAEVPLTNLVR 247

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I     LP         FR E     R   G++R  +F   +       PE S  +  
Sbjct: 248 DEILEEDTLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-TRPEDSMAALE 306

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           ++     ++   L L    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 307 ELTGHAEKVLQLLDLPYRKVLLCTGDMGFGSSKTYDLEVWLPAQDTYREISSCSNMWDF 365


>gi|194018062|ref|ZP_03056667.1| seryl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010254|gb|EDW19831.1| seryl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 424

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 13/222 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEFGFTEVLPPYMVNRASMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I     LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNMHRDEILEGEQLPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHE 209
           +F   +   F + PE S     K+     ++   L L    M   +G +G         E
Sbjct: 280 QFNKVELVKF-VRPEDSYEELEKLTNQAEKVLQLLNLPYRVMSMCTGDLGFTAAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             + +     ++    +F  F     N  F            
Sbjct: 339 VWIPSQDTYREISSCSNFEAFQARRANIRFRPEPKAKPEHVH 380


>gi|194290005|ref|YP_002005912.1| histidyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|229558653|sp|B3R1K1|SYH_CUPTR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|193223840|emb|CAQ69849.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Cupriavidus taiwanensis LMG 19424]
          Length = 456

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 134/444 (30%), Gaps = 67/444 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++     R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 29  KGMNDMLPADAPLWEHFENAARAMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMY 88

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 89  SFTDSLNGEQLTLRPEGTAAAVRATIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 144

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F    A +              M     R++  LGL  + +          RA      
Sbjct: 145 QFHQLGAEALGFAGPDVDAEIILMCQ---RLWDDLGLTGVRLEINSLGQADERAAHREQL 201

Query: 204 GDLSHEFIVLAD--------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ---- 251
                 F  + D        T   +V  +K+     + +      D +   S+       
Sbjct: 202 IKYLEGFQDILDDDSKRRLYTNPLRVLDTKNPALQDMAANAPKLIDFLGEESLAHFEGVQ 261

Query: 252 ---WTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                       +    +  D              G + G I   G +Y  P+ A   G 
Sbjct: 262 RLLKANNIPFKINPRLVRGLDYYNLTVFEWITDKLGAQ-GTIAG-GGRY-DPLIAQMGG- 317

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                      + +G  R++  + E        + PD+V    + L++     +      
Sbjct: 318 ----KPAPACGWAMGIERIIELIREEG------VVPDAVG-CDVYLVH---QGEAAAQQA 363

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV---EI 418
                RL   G DV      D  G    SQ   AD  G    VI+G   V+   V   E+
Sbjct: 364 MVAAERLRDAGLDVVLHASPDGKGGSFKSQMKRADASGAAYAVIIGDDEVAAGVVQVKEL 423

Query: 419 KHR----LTGIREDMSLEEVINYA 438
           + R      G +  +  + +++Y 
Sbjct: 424 RQREQAEGGGQQATVPADGLVDYL 447


>gi|188534278|ref|YP_001908075.1| seryl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|238689714|sp|B2VC55|SYS_ERWT9 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|188029320|emb|CAO97197.1| Seryl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 21/231 (9%)

Query: 20  IASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H  +     G+    +    G    +  GQ AL    ++  + +    + G  E  V
Sbjct: 136 VRDHVELGEMAAGLDFAAAVKLTGSRFIVMKGQIALMHRALSQFMLDLHTEQHGYQETYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRN 127
           P L +      +G+   +G+++      +++A        PT E  +T++ R  I     
Sbjct: 196 PYLVNHASLYGTGQLPKFGEDLFHTRPLDEEASSSNYALIPTSEVPLTNLVRDEILEEET 255

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +       PE S  +  ++     +
Sbjct: 256 LPLKMTAHTPCFRSEAGAYGRDTRGLIRMHQFDKVEMVHI-TRPEDSMDALEELVGHAEK 314

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +   L L    +   +G +G         E  + A     ++    +  DF
Sbjct: 315 VLQLLNLPYRKVLLCTGDMGFGAQKTYDLEVWLPAQDTYREISSCSNMGDF 365


>gi|304316662|ref|YP_003851807.1| glycyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778164|gb|ADL68723.1| glycyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 462

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 109/356 (30%), Gaps = 53/356 (14%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++ +++ R  +PF   QI   FR+E+ P  
Sbjct: 154 MFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVLRTTRRKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R+REF   +   F   P      +N      +     LGLK   +R        D S
Sbjct: 214 FTFRTREFEQMELEFF-CKPGEDIEWFNYWKEFCMNWLLNLGLKKENLRF------RDHS 266

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +       T +     F    +       D  +  +         Y           
Sbjct: 267 KEELSHYSNATTDIEYRFPFGWGELWGIADRTDFDLKRHMEHSGVDLTYFDPITNEKYIP 326

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +   P                    + +L         +                     
Sbjct: 327 YCIEPSVGA---------------DRVALAFLIDAYNEEE-------------------- 351

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +E +     +     +AP K +++ +        D   K+Y  L K    V +D+ G  
Sbjct: 352 -VEENDTRVVLKLHPMIAPIKAAVLPLSKK---LGDNAYKLYDDLRKEFV-VDYDETG-S 405

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++   D +G P  +      ++D  V I+ R T  +  + + EV  Y   +  
Sbjct: 406 IGKRYRRQDEIGTPYCITYDFDSLNDESVTIRDRDTMQQVRLKINEVKPYLESKLK 461


>gi|309972472|gb|ADO95673.1| Histidyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 423

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 139/428 (32%), Gaps = 49/428 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIILTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+ ++  +  E  V      +D   P       D            +             
Sbjct: 187 HQDLMNDEEKERLVRNPLRILDTKNPE-LQKVLDNAPKLLDYLDDESREHFEQLCSLLDA 245

Query: 268 FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
                E      RG++     +F       G + ++     + G       H      + 
Sbjct: 246 VGIQYEINPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFA 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKV 375
           +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L   
Sbjct: 306 MGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGAILAAFELAEKVRSELP-- 355

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEV 434
             +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  +
Sbjct: 356 HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNI 415

Query: 435 INYASHRF 442
           I+Y   +F
Sbjct: 416 IDYLQTQF 423


>gi|326389845|ref|ZP_08211409.1| glycyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994113|gb|EGD52541.1| glycyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 462

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 149/449 (33%), Gaps = 66/449 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   Q     + +    L + ++WV SG   S+      L 
Sbjct: 34  WDYGPLGVELKNNIKRMWWKRFIQQSPYNVGIDTAILMNPEVWVASGHVSSFSD---PLM 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ----LKFRDELR------PRF 147
           D  +    +          +   +IK  + L  +         ++F  E +        +
Sbjct: 91  DCKECKSRFRAD------QLIEDYIK-EKELNISIEGWTNEQLMEFIKEHKVPCPKCGAY 143

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGP 201
                R+F +       +T +     Y +      +FV++  +          +    G 
Sbjct: 144 NFTDIRKFNLMFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRT---TRKKIPFGIGQ 200

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IG    +E         T+ F   +   F  P E+ ++        +           + 
Sbjct: 201 IGKSFRNEITPGNFIFRTREFEQMELEFFCKPGEDMEWFSYWRKYCMDWLLEFGLKEENL 260

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD----- 306
              +   + L      +    ++ + F FG          T + L       G D     
Sbjct: 261 RFRDHKKEELSHYSTATT---DIEYNFPFGWGELWGIANRTDFDLRQHMEHSGVDLSYMD 317

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINI 354
              G+ +        +G  R++ A +  +++ +          +    ++AP K +++ +
Sbjct: 318 PVTGEKYIPYCIEPSVGVDRLMLAFLIDAYEEEELEDGETRVVLRLHPALAPIKAAVLPL 377

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D 
Sbjct: 378 SKK---LSENAYKLYDQLRNKFV-VDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDH 432

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V I+ R T  +  + +EEV  Y   R +
Sbjct: 433 CVTIRDRDTMQQVRIKIEEVEKYLEERLN 461


>gi|204930096|ref|ZP_03221117.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321090|gb|EDZ06291.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|322616395|gb|EFY13304.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619645|gb|EFY16520.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622659|gb|EFY19504.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628572|gb|EFY25359.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634947|gb|EFY31676.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637035|gb|EFY33738.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641604|gb|EFY38241.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644441|gb|EFY40981.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649589|gb|EFY46020.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654109|gb|EFY50432.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659224|gb|EFY55473.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663498|gb|EFY59700.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670234|gb|EFY66374.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322671470|gb|EFY67592.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676826|gb|EFY72893.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682751|gb|EFY78770.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686430|gb|EFY82412.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323191716|gb|EFZ76970.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199759|gb|EFZ84848.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202196|gb|EFZ87250.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209023|gb|EFZ93960.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210415|gb|EFZ95304.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215844|gb|EGA00584.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222449|gb|EGA06823.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226864|gb|EGA11047.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229818|gb|EGA13941.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233043|gb|EGA17139.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240778|gb|EGA24820.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243095|gb|EGA27115.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247417|gb|EGA31373.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250911|gb|EGA34788.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256446|gb|EGA40180.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263112|gb|EGA46654.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267978|gb|EGA51457.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270716|gb|EGA54156.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEIRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDQLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|70725009|ref|YP_251923.1| seryl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|123661703|sp|Q4LAK8|SYS_STAHJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|68445733|dbj|BAE03317.1| seryl-tRNA synthetase (Serine-tRNA ligase) [Staphylococcus
           haemolyticus JCSC1435]
          Length = 428

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPEKFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                 PE S  +   M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRI-EKPEDSWDALEDMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYD 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 NYKEISSCSNCTDFQARRANIRF 368


>gi|161378160|ref|NP_299565.2| seryl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|30173217|sp|Q9PB58|SYS_XYLFA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 426

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E++VP + +AD    +G+   + ++M       +    
Sbjct: 171 ARLHRALAQCMLDLHVRQHGYEEVNVPIIVNADSLYGTGQLPKFEEDMFSTQ-LGEHRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T++ R+ I     LP       L FR E     R   G++R  +F   +  
Sbjct: 230 LISTSEISLTNLVRNEIIEADRLPLRMAAHSLCFRSEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    P+ S+  + +M      +   LGL    +   +G +G   +     E  + +   
Sbjct: 290 SV-CKPQESEGEHQRMTRCAETVLEMLGLPYRKILLCTGDMGFAATKTYDLEVWLPSQGM 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|332141537|ref|YP_004427275.1| seryl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693277|sp|B4RZU0|SYS_ALTMD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|327551559|gb|AEA98277.1| seryl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 12/202 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYG 107
             +   + +      G  EM VP L +AD    +G+   +G+++          + +   
Sbjct: 175 RALAQFMLDTHTQEHGYQEMYVPYLVNADSLYGTGQLPKFGEDLFHTKPATEEGQGLSLI 234

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSF 163
           PT E  +T+I R  I   + LP         FR E     R   G++R  +F   +    
Sbjct: 235 PTAEVPLTNIARDEILDAKTLPVKMTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL 294

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGET 219
            + PE S  +   +      I  +L L    +   +G +G         E  + A     
Sbjct: 295 -VKPEDSFDALEALTGHAEVILQKLELPYRKVLLCTGDMGFGACKTYDLEVWLPAQNTYR 353

Query: 220 QVFCSKDFMDFPIPSENTDFDD 241
           ++    + +DF        F +
Sbjct: 354 EISSCSNMLDFQARRMQARFRN 375


>gi|223043384|ref|ZP_03613430.1| seryl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222443173|gb|EEE49272.1| seryl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 428

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMITKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPEKFTGQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                 PE S  +   M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRI-EKPEDSWDALEDMTKNAESILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|76803150|ref|YP_331245.1| histidyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|121696645|sp|Q3IMP5|SYH_NATPD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|76559015|emb|CAI50613.1| histidine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 432

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 124/434 (28%), Gaps = 56/434 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P    A   V   I     R G  E+  P L+   L+V +SG  +   +E+  
Sbjct: 6   KGFREFYPGEMSARREVTDTIETRARRYGFREVGTPALERTQLYVDKSG--EEIVEELYA 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  +  +  ++    P  ++  +  +R E   +    R REF
Sbjct: 64  FEDKGGREVSLTPELTPTVARMVVAKQQALAK-PVKWFSTRPFWRYEQVQQ---GRFREF 119

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVL 213
              +   F      +      +  +       LGL       R     I G L       
Sbjct: 120 YQTNIDIFGSERPEADAE---VLATAADALTDLGLDGADFEFRVSHRDILGGLLAAMDSD 176

Query: 214 ADTGETQVFCSKD-----------------FMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            DT +      K                    +     ++    D +S            
Sbjct: 177 VDTTDAIRAVDKREKIDDEEYRSLLVGAGLTHEEADTFDSLLRTDDLSELVEFAGTDRVE 236

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG- 315
           AA  ++       +    +   +  +E       G  Y   +        G+      G 
Sbjct: 237 AAVENLQAVLDAAADFGVREFCSVSLETAR----GLDYYTGVVFECFDTSGEVSRSVFGG 292

Query: 316 --------SYGIGAMRVVAAVIES-----SHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                   S+G      V   I            G +WP         ++ +       R
Sbjct: 293 GRYDDLIESFGGQPTPAVGVGIGHETLSLLCQRAG-VWPAEELSTDYYVLTVGD----TR 347

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP--LQVIVGSKFVSDSKVEIKH 420
           D    +   L  +G  V  D      G Q + AD  G      V+VG + + D  V +K 
Sbjct: 348 DVALDVARELRALGHVVETDLSDRGFGDQLSYAD--GINAETVVVVGEQDLEDDAVTLKD 405

Query: 421 RLTGIREDMSLEEV 434
             +G +  + L   
Sbjct: 406 MASGDQTQVPLAAF 419


>gi|15897222|ref|NP_341827.1| histidyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284174467|ref|ZP_06388436.1| histidyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|32130140|sp|Q980L3|SYH_SULSO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|13813419|gb|AAK40617.1| Histidyl-tRNA synthetase (hisS) [Sulfolobus solfataricus P2]
 gi|261601888|gb|ACX91491.1| histidyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 426

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/434 (13%), Positives = 144/434 (33%), Gaps = 35/434 (8%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            +  +G+  ++ +  + +  + +  R+   + G  E+  P ++   L+   G  +   + 
Sbjct: 4   FETVRGMKDYIGIDAEKIRYLESTFRDLAKKYGYSEIITPVVEEFKLFELKGG-EELRQT 62

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    D+ D+ +   P     +   +  +++S    P   +     +R +  P++G  R 
Sbjct: 63  MYVFKDKADREISLRPEITPSVARAYIQNLQS-SPKPIRLFYFGTVYRYDE-PQYG--RY 118

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFI 211
           REF          +   +      +       + +L L K I ++  +  I   +  ++ 
Sbjct: 119 REFRQAGIEMIGDSSILADVE---VLDLLYNFYDKLNLSKDITIKINNIGIFRKIMDKYN 175

Query: 212 VLADTGETQV-FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +  +  E  +    K+ +D  +     +  +   ++ +    T   A   D+ +    + 
Sbjct: 176 IEDNLQEHVLHLIDKNKVDEALVILEKNIKNKDIMDFLNMILTKKEAKLEDIESLAELEE 235

Query: 271 LP---------------------ENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGK 308
           +                        K     G   G  +Y G  +  L  S  F  A G 
Sbjct: 236 VSKLDIKNEFEYLLRLSRILSSLNVKFKVDLGFVRGLAYYTGLIFEVLHPSVQFSIAGGG 295

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +   +  YG      +   I        I       P  + ++ I    +    A   +
Sbjct: 296 RYDKLIELYGGLPSPAIGFAIGVERTLLVIKDLKVEEPINVIVVGI---SEEAIPAMFTV 352

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K    V  +   + +          GF L +I+G + +  + + +++ +T  +  
Sbjct: 353 SRMLRKEEYKVVINTKDQPLSKLLPYYASQGFKLAIIIGKQELEKNMITVRNLITRKQIS 412

Query: 429 MSLEEVINYASHRF 442
           + LE V++      
Sbjct: 413 IPLENVLDAIKQTL 426


>gi|261209229|ref|ZP_05923621.1| histidyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289566145|ref|ZP_06446580.1| histidyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294614200|ref|ZP_06694120.1| histidyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|260076775|gb|EEW64510.1| histidyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289162090|gb|EFD09955.1| histidyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592976|gb|EFF24565.1| histidyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 128/435 (29%), Gaps = 31/435 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP   +    V    R         EM  P  +  ++   S     D 
Sbjct: 1   MSFQRPKGTNDILPGESEKWQFVEETARLLFRDYQYNEMRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPR 146
             KEM    D+ ++ +   P     +   F  H         PF  + +   FR E RP+
Sbjct: 61  VSKEMYDFYDKGERHVTLRPEGTAPIVRSFVEHKLFGPEYAKPFKTFYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F      +F    E        M ++ L  F +LG+  I  R     +G   
Sbjct: 120 KG--RLRQFHQIGVEAFGS--ENPATDVESMVMA-LDFFKQLGITQI--RLVINSLGDKE 172

Query: 207 SHEFIVLADTG-----ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           + +    A        E+++           P    D  D      + E  +     +  
Sbjct: 173 TRQAYRQALIDYLLPFESELSEDSKRRLHENPLRVLDSKDKRDQKFVAEAPSILDYLSEP 232

Query: 262 VHNEKLFDSLPENKRVSARGIEV----GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                       N       I+     G  +Y  T + +   A   GA  +      G Y
Sbjct: 233 AQKHFDTVVSMLNALAVPYEIDSNMVRGLDYYTHTIFEIMSDAPKMGA--QATICAGGRY 290

Query: 318 GIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDA-------CEKIY 369
                 +            GI     ++   ++ +      D               K+ 
Sbjct: 291 DNLVEELGGPSTPGFGFAMGIERLLLTMEAEEVVIPAFNELDAYVVALGDETNIEALKVV 350

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             +   G     D M  +  +QF  AD     L +++G   ++   + +K   +   +  
Sbjct: 351 QAIRNFGFSADRDFMNRKAKAQFKTADKANAKLVLVIGEDELASQTINVKAMASRKEKSF 410

Query: 430 SLEEVINYASHRFSN 444
            LEE+  +    +  
Sbjct: 411 PLEEIYEHFDEVYDE 425


>gi|224582773|ref|YP_002636571.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|254783044|sp|C0PXT0|SYS_SALPC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|224467300|gb|ACN45130.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEIRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDQLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|314934952|ref|ZP_07842311.1| serine--tRNA ligase [Staphylococcus caprae C87]
 gi|313652882|gb|EFS16645.1| serine--tRNA ligase [Staphylococcus caprae C87]
          Length = 428

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMITKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPEKFTGQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                 PE S  +   M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRI-EKPEDSWDALEDMTKNAESILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|217316865|gb|ACK37838.1| putative glutamyl-prolyl tRNA synthetase [Munidopsis rostrata]
          Length = 134

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  + K   +    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVFEDPETKQKQFCFQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVCR-----DACEKIYARLSKVGCDVFWDDMG 385
           G++ P   A  ++ ++   I A           + C K+   L+  G  V  D   
Sbjct: 74  GLVLPPRAASVQVIIMPVGITAKSSEQDKANLIEECRKLEKDLADHGMRVRCDMRD 129


>gi|241895222|ref|ZP_04782518.1| seryl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241871528|gb|EER75279.1| seryl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 427

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 7/179 (3%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G +    V   + +E  + G  EM  P L   +    +G+Y  +  +  R+  
Sbjct: 163 FVYYVGQGARLERAVYNFMLDEHQKEGYKEMITPYLVKDEAMYGTGQYPKFMDDAYRVGT 222

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            ++  M   PT E  +T+ FR  +     LP++   +   FR E     R   G++R  +
Sbjct: 223 NDE--MTLIPTAEVPLTNYFREEVIDADKLPYSVTALSPAFRQEAGSAGRDTRGLIRMHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           F   +   F   PE S  +   M V+   +  +L L    +   +G +G   +  + V 
Sbjct: 281 FNKVEMVKF-TKPEDSYQALEDMTVNAENLLKKLNLPYHVITLSTGDMGFSAAKTYDVE 338


>gi|269926347|ref|YP_003322970.1| histidyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790007|gb|ACZ42148.1| histidyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 439

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 135/455 (29%), Gaps = 80/455 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE-MLRL 96
           G   +LP        V     E   R G + +  P+L+ A+ +   G+  +  +  M + 
Sbjct: 12  GFRDFLPESMALRKYVIRTFEEIFERYGFLPLETPSLEYAETFE--GKSSTEAETLMYKF 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   + +         +  +   H      +PF  Y I   +R E RP+ G  R REF 
Sbjct: 70  VDAGGRRVGLRYDLTVPLARVVGMHPD--LPMPFKRYHIAPVWRAE-RPQKG--RYREFW 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--------RAESGPIGGDLSH 208
             D          +      +          +G K   +         A +   G     
Sbjct: 125 QCDVDIVGSDEPAADAEILAII---SDCLSAVGFKEYRVLINHRKILSAMARVAGASPEQ 181

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              V           +       I           S   I        A T   H E+L 
Sbjct: 182 AVHVYRAIDRLSKVGADGVRQELIQ---LGLSPDSSDRLIALINIEGDADTVLSHLERLL 238

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA--------------------TFKGAD-- 306
           +  PE  +      E+  I    + Y++ M++                    T       
Sbjct: 239 EDQPEGIQAIN---ELRSILNLLSNYNVNMNSYLIQPSLARGLDYYTGAVFETVVDEPKV 295

Query: 307 -----------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                            GK       S G+     +  V+E      G++ P  V+    
Sbjct: 296 GSVTGGGRYDELVGIFAGKKIPTVGTSLGL---ERIIDVLEEL----GLMTPPRVS---- 344

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIV 406
           + + +   D  C  +  +I A L + G          + G    Q   A  LG P  +I 
Sbjct: 345 ADVFVTVFDTSCIASSIQIAANLRRKGIKTELYL--GKPGSLRKQLTYASRLGIPWVIIA 402

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G   +++++V ++   +G ++ + L E+  +    
Sbjct: 403 GPDELANNEVTLRDMQSGEQKRLPLHELPEHIKSL 437


>gi|170782097|ref|YP_001710430.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156666|emb|CAQ01824.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 461

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 149/476 (31%), Gaps = 94/476 (19%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVE 82
            + + G I+  S+  + + PLG    +N+     +         + +    +    +W  
Sbjct: 19  FVFQAGEIYGGSRSAWDYGPLGVALKENIKRQWWQTMVNGRDDVVGLDSSVILPRRVWEA 78

Query: 83  SGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT-FYQI--- 135
           SG  + +     E L    R     +                   + + P      +   
Sbjct: 79  SGHVEVFSDPLVESLHTHKRYRADHLLEAYE------------AKHGHPPVNGLADVNDP 126

Query: 136 ---QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHR- 187
              Q     E +   G++++  FL           EG       +   +FV++  +    
Sbjct: 127 DTGQPGSWTEPQNFSGLLKT--FLGP-----VDNQEGLHYLRPETAQGIFVNFANVLSAA 179

Query: 188 -----LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                 G+         G IG    +E           +F +++F    +        D 
Sbjct: 180 RQKPPFGI---------GQIGKSFRNEITPQ-----NWIFRTREFEQMEMEFFVEPGTDA 225

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFG--------- 291
                 ++   A Y               P  K    S R +++ + F F          
Sbjct: 226 EWHQYWIDARYAWYTDLGIDPENLRLFEHPAAKLSHYSTRTVDIEYRFGFAGGAWGELEG 285

Query: 292 ----TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-- 337
               T Y L   +   G D         +     +     G  R + A +  ++      
Sbjct: 286 IANRTDYDLRTHSEASGQDLSYFDQTKNERWIPYVIEPAAGLTRSMMAFLVDAYHEDEAP 345

Query: 338 -----------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                      +     +AP K++++ + + ++       ++ A L K+  ++ +DD G 
Sbjct: 346 NAKGGVDKRTVLRLDRRLAPVKVAVLPL-SRNEKLSPVARELAAELRKIW-NIEFDDAGA 403

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            IG ++   D +G P  V +    + D  V ++ R T  +E + L+E++ Y + + 
Sbjct: 404 -IGRRYRRQDEIGTPFCVTIDFDTLDDRAVTVRERDTMAQERIPLDELVGYLAGQL 458


>gi|160887095|ref|ZP_02068098.1| hypothetical protein BACOVA_05111 [Bacteroides ovatus ATCC 8483]
 gi|237721366|ref|ZP_04551847.1| seryl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293369930|ref|ZP_06616501.1| serine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|299148593|ref|ZP_07041655.1| serine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|156107506|gb|EDO09251.1| hypothetical protein BACOVA_05111 [Bacteroides ovatus ATCC 8483]
 gi|229449162|gb|EEO54953.1| seryl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292634976|gb|EFF53497.1| serine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|298513354|gb|EFI37241.1| serine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 424

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 117/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 EEKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++      T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRNAEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|115350893|ref|YP_772732.1| seryl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323794|sp|Q0BHH5|SYS_BURCM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|115280881|gb|ABI86398.1| seryl-tRNA synthetase [Burkholderia ambifaria AMMD]
          Length = 433

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--- 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+     +   
Sbjct: 169 ARLHRALAQFMIDTHTLQHGYTETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGGENTI 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVEGSALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       P+ S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PDASYAALDEMVGHAEAILQKLGLPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|269959126|ref|YP_003328915.1| histidyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848957|gb|ACZ49601.1| histidyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 146/435 (33%), Gaps = 69/435 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P        +  I      R G + +  P  +  D+++++     D  GKEM  
Sbjct: 11  GTRDLSPEECYKFWYIRDIAHSMGERYGFVPVETPIFEFQDVFLKTLGDSSDIIGKEMYS 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR    ++  P   E+   + R  I     LP   +     FR E RP+    R R+F
Sbjct: 71  FPDRGGDVLVLRP---ELTAAVARMLICERLALPARLFTFGPVFRYE-RPQK--CRQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-------- 207
              +   F     G       M ++Y  I   L L++  +  E   +G   S        
Sbjct: 125 HQINYEHFGA---GCTADAELMALAY-DILGALNLRN-KVHLEINSLGSQDSILKYKSSL 179

Query: 208 ------HEFIVLAD------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 HE  +  D      T   ++  SKD  D  I        D     S +      
Sbjct: 180 LQYFSEHEHALSGDSRRRVHTNPLRILDSKDRGDMAILCNAPVVADFYDDESKM------ 233

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            A    V                 RG++   G +F F T       A   G  G+   + 
Sbjct: 234 -AFDGVVRQLDNLGIPHTVNPRLVRGLDYYCGVVFEFKTTCLGAQDAVIAG--GRYDKLV 290

Query: 314 MGSYGIGA--------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
               G           M  +A++++ SH G G         F ++ + +    +   +  
Sbjct: 291 ASMGGDNVPAVGFAGGMERLASLVDYSH-GTG---------FSVAFLPLG---EGAVECA 337

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQF--AVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            +    L   G  V  D   E++  +     AD  G  L +I+G + ++  +V  +H  T
Sbjct: 338 MRSAYELRSRGIRVLCDGAVEKL--KIGLKHADRSGVDLALILGDEEIAKGEVLCRHMAT 395

Query: 424 GIREDMSLEEVINYA 438
           G +E +S+ ++ +Y 
Sbjct: 396 GAQETVSICKLGDYV 410


>gi|16759834|ref|NP_455451.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16764324|ref|NP_459939.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29142393|ref|NP_805735.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56413985|ref|YP_151060.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62179487|ref|YP_215904.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161614806|ref|YP_001588771.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167550365|ref|ZP_02344122.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167994705|ref|ZP_02575796.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230857|ref|ZP_02655915.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168263551|ref|ZP_02685524.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466548|ref|ZP_02700410.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168822936|ref|ZP_02834936.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445741|ref|YP_002040162.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194471358|ref|ZP_03077342.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197249370|ref|YP_002145881.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197262813|ref|ZP_03162887.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362908|ref|YP_002142545.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198244710|ref|YP_002214887.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200390080|ref|ZP_03216691.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205352171|ref|YP_002225972.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856355|ref|YP_002243006.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213428591|ref|ZP_03361341.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213580909|ref|ZP_03362735.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213609744|ref|ZP_03369570.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|213851472|ref|ZP_03381370.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|238913262|ref|ZP_04657099.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289830102|ref|ZP_06547533.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|54039690|sp|P67564|SYS_SALTI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|54042041|sp|P67563|SYS_SALTY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461661|sp|Q5PGI6|SYS_SALPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|81309725|sp|Q57R38|SYS_SALCH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083584|sp|A9N7X6|SYS_SALPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238689928|sp|B5BBR2|SYS_SALPK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238690019|sp|B5F146|SYS_SALA4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238690350|sp|B5FQ36|SYS_SALDC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238690425|sp|B5QYP4|SYS_SALEP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238690487|sp|B5R8I1|SYS_SALG2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238693584|sp|B4T128|SYS_SALNS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|25293157|pir||AI0611 seryl-tRNA synthetase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16419475|gb|AAL19898.1| serine tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16502127|emb|CAD05363.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138023|gb|AAO69584.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56128242|gb|AAV77748.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62127120|gb|AAX64823.1| serine tRNA synthetase ; also charges selenocystein tRNA with
           serine [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364170|gb|ABX67938.1| hypothetical protein SPAB_02558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404404|gb|ACF64626.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194457722|gb|EDX46561.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195631016|gb|EDX49602.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197094385|emb|CAR59900.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197213073|gb|ACH50470.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241068|gb|EDY23688.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197939226|gb|ACH76559.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199602525|gb|EDZ01071.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205271952|emb|CAR36796.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205324587|gb|EDZ12426.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327478|gb|EDZ14242.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334663|gb|EDZ21427.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205340753|gb|EDZ27517.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205347703|gb|EDZ34334.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206708158|emb|CAR32451.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261246180|emb|CBG23984.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992697|gb|ACY87582.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157507|emb|CBW16997.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911951|dbj|BAJ35925.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320085200|emb|CBY94986.1| Seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223287|gb|EFX48356.1| Seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322713956|gb|EFZ05527.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323129229|gb|ADX16659.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326622640|gb|EGE28985.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326627215|gb|EGE33558.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332987855|gb|AEF06838.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEIRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDQLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|294628353|ref|ZP_06706913.1| histidyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292831686|gb|EFF90035.1| histidyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 420

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 140/433 (32%), Gaps = 40/433 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  +P        V   I      +G   +  P  ++ +L+        D   
Sbjct: 4   FKAPKGTYDLIPPDSAKFLAVREAIAAPLRNSGYGYIETPGFENVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDKLALRPEG-TASVLRAALEANLHKAGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL++  +   S       PI
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLRNFRILLNSLGDKECRPI 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E  +  ++      +  +  D    ++   ++  +          
Sbjct: 177 YRAALQDFLRGLDLDEDTLRRAEINPLRVLDDKRPDVQKQLTDAPLLRDYLCDGCKAYHE 236

Query: 263 HNEKLFDSLPENKRVSA---RGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKD 309
              +L  +   +        RG++      F       G++ ++     + G     G  
Sbjct: 237 EVRELITAAGVSFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G + +G  R V A+     +G  +  P + + F + L       +  R       
Sbjct: 297 ALPSVG-WALGVDRTVLAL---EAEGVELQLPATTSVFAVPL------GEEARRVLFAKV 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K G    +   G+ + +    A+  G    +++G + +++  V++K   +G +  +
Sbjct: 347 TELRKNGVAADFSYGGKGLKAAMKAANRSGARYALVMGERDLAEGVVQLKDMESGEQVAI 406

Query: 430 SLEEVINYASHRF 442
            + E++     R 
Sbjct: 407 GVNEIVAELESRL 419


>gi|297181088|gb|ADI17287.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0070_17D04]
          Length = 463

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 135/431 (31%), Gaps = 33/431 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q ++G    +P        V    R      G  EM+ P  + A+++        D   K
Sbjct: 48  QPARGTTDLMPAAMAGHQRVIGTARAAAGLYGFQEMATPMFEFAEVFSRPLGDSSDVVTK 107

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  + +   P +   +     S+    ++LP  F+     FR E RP+ G  R
Sbjct: 108 ETYNFTDRGGETLTLRPENTAGVVRAMISNGL-TQSLPLKFFYAGPMFRYE-RPQKG--R 163

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +            RI   LG+  +        +G   S +  
Sbjct: 164 MRQFHQIGIEYLGPRDGLADAEIIGCGA---RILDDLGVLDLCT-LRLNSLGDSESRQAY 219

Query: 212 ----------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       AD  E             + S++     II+    ++ +    +    
Sbjct: 220 RAALIDFLNAHEADLSEDSRTRLTSNPLRILDSKDAGDRAIIAEAPRLDAFLNDGSRRHF 279

Query: 262 VHNEKLFDSLPENKRVSA---RGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                  D    +        RG++      F F T  +L    T  G    D   +M  
Sbjct: 280 DSVTGALDGAGISWSFDPLLVRGLDYYCHTAFEFITD-ALGAQGTVLGGGRYDGLSEMLG 338

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
                    AA +E      G + P   AP  ++++ +    +    A   +   L   G
Sbjct: 339 GPPVPGVGWAAGVERLAMLVGNVEPA--APR-VAVMPMDGDAEG---AAFALAESLRGAG 392

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V     G  IG +    D  G  + VI+GS  V+ S  +I+    G ++++   E+ +
Sbjct: 393 IAVDLPAGGA-IGKRLKKVDRAGVRIAVILGSDEVAGSSAQIRDLGAGTQQEVPQAELAS 451

Query: 437 YASHRFSNNRP 447
                    + 
Sbjct: 452 VLHGMLGEGQA 462


>gi|325528345|gb|EGD05497.1| seryl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 433

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVEASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PETSYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|312795387|ref|YP_004028309.1| Seryl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167162|emb|CBW74165.1| Seryl-tRNA synthetase (EC 6.1.1.11) [Burkholderia rhizoxinica HKI
           454]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 13/217 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RND 101
             +    +   + +      G  E   P + + +    +G+   +  +M R+      N 
Sbjct: 168 AARLHRALAQFMLDTHTQTHGYTECYTPYIVNPESLYGTGQLPKFADDMFRVEKGGGDNK 227

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
                  T E  +T+  R  I     LP         FR E     R   G++R  +F  
Sbjct: 228 VTQYLISTSEISLTNTVRDSIVDADRLPIRLTAHSPCFRSEAGAYGRDTRGMIRQHQFDK 287

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVL 213
            +      +P+ S  +  +M      I  RL L    +   +G +G   +     E  + 
Sbjct: 288 VEMVQI-TSPDSSYQALEEMVGHAETILQRLELPYRVITLCTGDMGFSAAKTYDLEVWLP 346

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           A     ++    +   F        F +      +V 
Sbjct: 347 AQRAYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|321441301|gb|ADW85065.1| glu- + pro-tRNA synthetase [Cyclotorna sp. JCR-2011]
          Length = 134

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIYDDPETQEKKYVFQNSWGLT-TRTIGVMILVHGDDQ 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +I ++             +   D+C+++   L   G     D       
Sbjct: 74  GLVLPPRVADIQIIVVPCGITASSTPDERKKLMDSCKELVDCLVASGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|297571270|ref|YP_003697044.1| glycyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931617|gb|ADH92425.1| glycyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 464

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/444 (14%), Positives = 146/444 (32%), Gaps = 59/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +         + +    +   ++WV SG   ++   ++   
Sbjct: 36  WDYGPLGVELKENIKRQWWKANVTGREDMVGLDSSIILPREVWVASGHVSTFSDPLIECQ 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        +            S  ++       + ++  E +P  G++++  FL 
Sbjct: 96  HCHKRLREDDLIEQYAEKKGVAESEVSMSDVACPNCGTRGQW-TESKPFSGLLKT--FLG 152

Query: 158 ---KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIV 212
               +     L PE ++  +            +   G+         G +G    +E   
Sbjct: 153 PVDNEEGLHYLRPETAQGIFVNFLNVVTAARKKPPFGI---------GQVGKSFRNEITP 203

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                 T+ F   +   F  P E+ ++        +        +  +    E   +   
Sbjct: 204 GNFIFRTREFEQMEIEFFVKPGEDEEWHQSWIDARLAWYEDLGVSRENLRLYEHPKE--- 260

Query: 273 ENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT--------FKGADGKDHY 311
           +    S R +++ + F F              T + L   +         F  A G+ + 
Sbjct: 261 KLSHYSKRTVDIEYRFGFQGSEWGELEGIANRTDFDLSSHSEASGKKLEYFDQATGERYT 320

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHD 358
             +     G  R + A +  ++                 +     +AP K++++ + +  
Sbjct: 321 PYVVEPSAGLTRSLMAFLTEAYTEDEAPNTKGGVDKRIVLKLDPRLAPVKVAVLPL-SRS 379

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++ A+L K   +V +DD G  +G ++   D +G P  V V    + D  V I
Sbjct: 380 ADLSPMARELAAKLRKHW-NVDFDDAGA-VGRRYRRQDEIGTPFCVTVDFDSLEDQAVTI 437

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +  + L EV  Y + + 
Sbjct: 438 RDRDTMEQVRIPLAEVEAYLAGKL 461


>gi|197116508|ref|YP_002136935.1| seryl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|238690859|sp|B5E8F6|SYS_GEOBB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|197085868|gb|ACH37139.1| seryl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 422

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +   +    IEM  P + + +    +G+   + +++           
Sbjct: 168 GARLERALINYMLDLHTDEHKYIEMLPPFMVNRECMTGTGQLPKFEEDLF---HMEGVDF 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP ++      FR E     +   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRGEILKGSDLPISYVAYTPCFRKEAGSYGKDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             F  +PE S     K+      +  RL +    +   +G IG   +  F + 
Sbjct: 285 VKF-TSPEDSYQQLQKLLGHAEEVLRRLQIPYRVVELCTGDIGFSAAKTFDIE 336


>gi|89100960|ref|ZP_01173806.1| seryl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084331|gb|EAR63486.1| seryl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 426

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G +E+  P + +      +G+   + ++   + 
Sbjct: 163 FVFYKGLGARLERALFNFMLDLHTEEHGYMEVLPPYMVNRASMTGTGQLPKFEEDAFLIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHRDEILTNEQLPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     ++   LGL    +   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VRPEDSYEELEKLTGHAEKVLQLLGLPYRVLSMCTGDLGFTAAKKYDIE 338


>gi|332992290|gb|AEF02345.1| histidyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 426

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/439 (15%), Positives = 139/439 (31%), Gaps = 48/439 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V +++R+     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDCLPEVSGTWQKVESVLRQVVASYGYQEIRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQQ-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--------------------- 190
            R+F      ++ L          ++ +   R++   G+                     
Sbjct: 122 YRQFHQFGVETYGLDGPDID---LEVILLSARLWKAFGIEKHVTLQINSLGSNEARQAYR 178

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +++    +       L  E +   ++   +V  SK+       ++     D +   S   
Sbjct: 179 ETLISYLKERA--DKLDEESLRRLESNPLRVLDSKNPNVQAAIADAPSLLDHLDEESKTH 236

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--AD-- 306
             +     T    + ++   L        R +        G++ ++     + G      
Sbjct: 237 FDSLCERLTQAGISFEINPRLVRGLDYYNRTVFEWVTESLGSQGTVCAGGRYDGLVEQLG 296

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK       + G   M  +  ++ +  +        S A   + +  +         +  
Sbjct: 297 GKATPAVGFAMG---MERLVLLLTTLSEDA---LDTSSA--DVYVTAMGDDAQAYALEVS 348

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
           E +   L      V     G     Q   AD  G    +++GS+ +   +V +K  R   
Sbjct: 349 EHLRDTLPN--VRVMMHCGGGNFKKQLKRADKTGARFALLLGSQEMQSREVAVKPLRDGQ 406

Query: 425 IREDMSLEEVINYASHRFS 443
            ++ ++   + +  +   +
Sbjct: 407 EQQTIAFNALSSTIADLLN 425


>gi|332088847|gb|EGI93959.1| seryl-tRNA synthetase [Shigella boydii 5216-82]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|238026472|ref|YP_002910703.1| seryl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237875666|gb|ACR27999.1| Seryl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 433

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+  +      G    +  G   +    +   + +    + G  E 
Sbjct: 133 DFEVRDHVDVGTPLGLDFETGAKLSGARFTMLRGPIARLHRALAQFMIDTHTQQHGYTET 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + D+   +G+   +  +M R+     +         T E  +T+  R  I    
Sbjct: 193 YTPYIVNPDILRGTGQLPKFADDMFRVEKGGGENTVTQYLISTSEITLTNTVRESILDAA 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +       P+ S  +  +M     
Sbjct: 253 ELPVKLTAHSPCFRSEAGAYGRDTRGMIRQHQFDKVEMVQVTA-PDASYAALEEMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 AILQKLELPYRVVTLCTGDMGFSAAKTYDLEVWLPAQNTYREISSCSNTESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           F +      +V 
Sbjct: 372 FRNAQGKPELVH 383


>gi|221483162|gb|EEE21486.1| glycyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 134

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%)

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +    ++APF+ ++  +  +         ++   L + G  V WD     IG ++  AD
Sbjct: 4   FLNLHPALAPFQAAVFPVVTNVHELTARARRLCGWLRERGFSVLWDFSSTSIGRRYRRAD 63

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            LG P    +    ++D  V ++ R +  +  +  EE  ++   R
Sbjct: 64  GLGIPFCFTLDRTSLNDGTVTVRWRNSAEQRRLKFEEAESFLKER 108


>gi|118618885|ref|YP_907217.1| glycyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|118570995|gb|ABL05746.1| glycyl-tRNA synthetase GlyS [Mycobacterium ulcerans Agy99]
          Length = 459

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/482 (15%), Positives = 138/482 (28%), Gaps = 134/482 (27%)

Query: 40  YSWLPLGQKALDNVNAIIRE-----EQNRTGAIEMSVPTLQSADLWVESGRYDSYGK--- 91
           + + PLG +  +N+            ++  G   +    +   ++WV SG  + +     
Sbjct: 32  WDYGPLGVELKENIKRQWWRSVVTGREDVVG---LDSSIILPREVWVASGHVEVFHDPLV 88

Query: 92  --------------------------------------------------EML------R 95
                                                              M+       
Sbjct: 89  ESLITHKRYRADHLIEAYEAKHGQPPPNGLADIRDPETGEPGQWTEPREFNMMLKTYLGP 148

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +        +   T + +  +       S +  PF   QI   FR+E+ P   + R+REF
Sbjct: 149 IETEEGLHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREF 208

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F + P  +K  +     + L+ +  LG+ +  +R    P    LSH      D
Sbjct: 209 EQMEMEFF-VEPSTAKEWHQYWIDTRLQWYVDLGIDAENLRLFEHP-KEKLSHYSDRTVD 266

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                 F    + +    +  TDFD                  +     E  F    E+ 
Sbjct: 267 IEYKFGFVGNPWGELEGVANRTDFD--------------LSTHSKHSGTELSFYDQVEDV 312

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           R +   IE                                    G  R   A +  ++  
Sbjct: 313 RYTPYVIE---------------------------------PAAGLTRSFMAFLIDAYTE 339

Query: 336 KG-------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-VGCDVFW 381
                          +     +AP K +++ +  H          + A L K    D  +
Sbjct: 340 DEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLAAELRKYWNID--F 396

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++   D +G P  V V    + D  V ++ R    +E + + +V +Y + R
Sbjct: 397 DDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDDAVTVRERDAMTQERIGIAKVADYLAPR 455

Query: 442 FS 443
             
Sbjct: 456 LK 457


>gi|82777585|ref|YP_403934.1| seryl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|309784010|ref|ZP_07678654.1| seryl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|123769580|sp|Q32E12|SYS_SHIDS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|81241733|gb|ABB62443.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Shigella dysenteriae Sd197]
 gi|308928153|gb|EFP73616.1| seryl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 430

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|317133698|ref|YP_004093012.1| seryl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471677|gb|ADU28281.1| seryl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 429

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 8/177 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    V           G  E+  P L +      +G+   +  +       +
Sbjct: 166 FYKGLGARLERAVINYFLNTHTANGYTEILPPFLVNRASMTGTGQLPKFEDDAF---HID 222

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
            + +   PT E  +T+  R  I     LP  +      FR+E     R   G++R  +F 
Sbjct: 223 KEDLFLIPTAEVPVTNFHRDEILDGAQLPIKYCAYSACFREEAGSAGRDTRGLIRQHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             +   F + PE S     K+     R+   LGL    +   +G +G   +  + + 
Sbjct: 283 KVELVKF-VRPEDSYEELEKLTGDAERVLQGLGLPYHVVTLCAGDLGFSSAKTYDIE 338


>gi|9107447|gb|AAF85085.1|AE004040_10 seryl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 432

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 11/193 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E++VP + +AD    +G+   + ++M       +    
Sbjct: 177 ARLHRALAQCMLDLHVRQHGYEEVNVPIIVNADSLYGTGQLPKFEEDMFSTQ-LGEHRRY 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T++ R+ I     LP       L FR E     R   G++R  +F   +  
Sbjct: 236 LISTSEISLTNLVRNEIIEADRLPLRMAAHSLCFRSEAGSGGRDTRGMIRQHQFEKVELV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    P+ S+  + +M      +   LGL    +   +G +G   +     E  + +   
Sbjct: 296 SV-CKPQESEGEHQRMTRCAETVLEMLGLPYRKILLCTGDMGFAATKTYDLEVWLPSQGM 354

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 355 YREISSCSNCGDF 367


>gi|260171593|ref|ZP_05758005.1| seryl-tRNA synthetase [Bacteroides sp. D2]
 gi|315919907|ref|ZP_07916147.1| seryl-tRNA synthetase [Bacteroides sp. D2]
 gi|313693782|gb|EFS30617.1| seryl-tRNA synthetase [Bacteroides sp. D2]
          Length = 424

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 117/348 (33%), Gaps = 73/348 (20%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 EEKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S    +  D    +V+         + S +   
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMSFTAALCFDF---EVYSEAQKRWLEVSSVSN-- 358

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D    N +  ++      T   H                           G+  +LP  
Sbjct: 359 FDTYQANRLKCRYRNAEKKTELCHTLN------------------------GSALALP-- 392

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                                  R+VAA++E++   +GI  P ++ P+
Sbjct: 393 -----------------------RIVAALLENNQTPEGIRIPKALVPY 417


>gi|217316845|gb|ACK37828.1| putative glutamyl-prolyl tRNA synthetase [Cycloes granulosa]
          Length = 134

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  + K+  YV   S+G+   R V  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMTEIVFEDPETKEKRYVYQNSWGMT-TRTVGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  L+ +        A       AC+ + A L   G     D   
Sbjct: 74  GLVLPPRVASIQAILMPVGITAKTTEAEKAALYQACQDLEAELKAGGVKARCDLRD 129


>gi|328956051|ref|YP_004373384.1| histidyl-tRNA synthetase [Coriobacterium glomerans PW2]
 gi|328456375|gb|AEB07569.1| histidyl-tRNA synthetase [Coriobacterium glomerans PW2]
          Length = 438

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 125/431 (29%), Gaps = 67/431 (15%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWV--ESGRYDSYGKEMLRL-------------ADRNDKA 103
           E     G      P ++  D++V       D   KEM R+              + N KA
Sbjct: 29  EVFEPFGFELAETPAIEQVDVFVHGIGQSTDVVRKEMFRVFSGANLERALTQGTEANLKA 88

Query: 104 MIYGPTHEEVMTDIFRSHIKSYR----NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
                   E    + R+ ++         P   Y  +  FR E RP+ G  R R+F    
Sbjct: 89  KQRLALRPEGTAGLVRAVVEGNLVPPGGAPVKLYYAEAMFRGE-RPQRG--RLRQFHQIG 145

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                     +      M    +  + R+G     +R     +G          A   + 
Sbjct: 146 IEWLGAPDAAADAESIVML---MEFYRRIGFDMNRLRLSINSMGDAR----CRPAYREKV 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           + F ++   +           + +          +    ++ +  + L +    +     
Sbjct: 199 RDFIARHADEMCDECRERAQLNPLRAFDCKNDRCSKIMRSAPLMIDNLCEECRAHHDQVK 258

Query: 280 RGIEVGHIFYF-------GTKY-------SLPMSATFKG-------------ADGKDHYV 312
           R ++   + Y        G  Y          + A                   GK    
Sbjct: 259 RYLDAAGVSYLEDPTLVRGLDYYTRTVFEVEALDAAVGSIGGGGRYDGLVELEGGKPTPG 318

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              + G      +   +E+     G   P  V         +       R+    I  +L
Sbjct: 319 VGFAVGF---ERIMLALEAQGTRLGKDAPPCV--------YVANAGADLRERVFDIALQL 367

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D  G  +  QF  AD L   L +++G++ ++   V ++  ++     ++L+
Sbjct: 368 RAAGVRTEADYQGRSLKGQFKQADRLKAALIIVIGAEELAAGAVRVRDMVSHEERLVALD 427

Query: 433 EVINYASHRFS 443
           E++     R S
Sbjct: 428 EILEDVRSRLS 438


>gi|317506968|ref|ZP_07964737.1| glycyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316254726|gb|EFV14027.1| glycyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 466

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 119/384 (30%), Gaps = 82/384 (21%)

Query: 84  GRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           G++       M+       +        +   T + +  +       + R  PF   QI 
Sbjct: 135 GQWTEPRDFNMMLKTHLGPIETEEGMHYLRPETAQGIFVNFANVVTTARRKPPFGIAQIG 194

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ P   + R+REF            E  +  +                      
Sbjct: 195 KSFRNEITPGNFIFRTREF------------EQMEMEF---------------------- 220

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                        F+  A   E      + ++D  +        D  +L           
Sbjct: 221 -------------FVEPATAAE----WHQHWIDTRLQWYVDLGIDPENLRLYEHPKEKLS 263

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQM 314
             +    + +       ++     G+     F   T  K+S    + +  A+ + +   +
Sbjct: 264 HYSDRTVDIEYRFRFQGSEWGELEGVANRTDFDLSTHAKHSGVDLSYYDQAEDRRYTPYV 323

Query: 315 GSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVC 361
                G  R + A +  ++                 +     +AP K +++ ++   ++ 
Sbjct: 324 IEPAAGLTRSLMAFLVDAYAEDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLQKDGELV 383

Query: 362 RDACEKIYARLSKV-GCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +++ ARL K         D  E   IG ++   D +G P  + V  + + D  V I
Sbjct: 384 G-KAKELAARLRKRWNI-----DYDETQAIGRRYRRQDEIGTPFCITVDFESLEDQAVTI 437

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +E ++L++V  Y   R 
Sbjct: 438 RERDTMSQERVALDQVGRYLLERL 461


>gi|154483909|ref|ZP_02026357.1| hypothetical protein EUBVEN_01615 [Eubacterium ventriosum ATCC
           27560]
 gi|149735400|gb|EDM51286.1| hypothetical protein EUBVEN_01615 [Eubacterium ventriosum ATCC
           27560]
          Length = 427

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 7/178 (3%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG K    +     +    + G  E+  P + S +    +G+   + ++  ++   
Sbjct: 164 VYRDLGAKLERAIVNFFLDTHTTKHGYTEVFPPFMVSRESMTGTGQLPKFEEDAYKVQG- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           + K     PT E  +T+++R+ I     LP         FR E     R   G++R  +F
Sbjct: 223 DGKEYFLVPTAEVPVTNMYRNQILDGSKLPIMHCAYTACFRAEAGSAGRDTRGLIRQHQF 282

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    ++   G +G   + ++ + 
Sbjct: 283 NKVELVKF-CKPETSYDELEKLTRDAEDVLQMLGLPYRVVKICIGDLGFTAAMKYDIE 339


>gi|145632616|ref|ZP_01788350.1| histidyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|229844543|ref|ZP_04464683.1| histidyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|144986811|gb|EDJ93363.1| histidyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|229812792|gb|EEP48481.1| histidyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 423

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 147/429 (34%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++    +     + +  
Sbjct: 187 HQDLMNDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRTHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGATLAAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVN 414

Query: 434 VINYASHRF 442
           +I+Y   +F
Sbjct: 415 IIDYLQTQF 423


>gi|332305585|ref|YP_004433436.1| histidyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172914|gb|AEE22168.1| histidyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 145/437 (33%), Gaps = 44/437 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP            IRE     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDCLPEQSGLWQWAEKAIREVVASYGYQEVRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRND ++   P     +      H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADRNDDSLTLRPEGTASVVRAGNEHGLLYNQQ-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           +     R++ + G+    +  E   +G + + E  
Sbjct: 122 YRQFHQFGVEVFGLAGPDIDAE---VIALSARLWKKFGISE-QVTLELNSLGSNQARETY 177

Query: 212 VLA----------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E  +   +      + S+N      I+    +  +    +    
Sbjct: 178 RQALVEYLLERKEHLDEDSLRRLQSNPLRVLDSKNPQVQAAITDAPSLIDYLDAESKEHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKD 309
               +  D+L    R      RG++     +F       G + ++     + G       
Sbjct: 238 QALCERLDALGIQYRVNPRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              Q   + IG  R+V  +++++   + +       P  + +      D+V      KI 
Sbjct: 298 KTTQGVGFAIGLERLVL-MLQANGAEEFV-------PSPVDVYVTAMGDEVEL-YALKIA 348

Query: 370 ARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIR 426
             L  V     V     G     Q   AD     + +++G     +++V IK  R    +
Sbjct: 349 ESLRDVMPSLRVQTHFGGGNFKKQMKRADKSAARVALVLGESEQQEAQVSIKFLREDKPQ 408

Query: 427 EDMSLEEVINYASHRFS 443
             ++  E+ +  S  FS
Sbjct: 409 IRVARSELESTLSTLFS 425


>gi|295425887|ref|ZP_06818566.1| serine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295064429|gb|EFG55358.1| serine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 462

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 99/319 (31%), Gaps = 70/319 (21%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 190 FVFYKGAGALLERAVFNFFLDENTKEGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVD 249

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I     LP     +   FR E     R   G++
Sbjct: 250 NDDPDKPRDLTLIPTAEVPLVNYFRDEIIHGEKLPINVTALSPAFRSEAGSAGRDTRGLI 309

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R  EF   +       PE S     K+  +   +  +LGL    +   +G          
Sbjct: 310 RMHEFRKVEMVKV-CKPEDSWDQLEKLTHNAEHLLQKLGLPYHVVALSTG---------- 358

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      F S    D  +      + D     S     T   A  + +        
Sbjct: 359 --------DASFTSAKTYDLEV---WMPYQDKYREISSCSNCTDFQARRAHIR------- 400

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVI 329
                                          ++  +GK H V  +   G+   R VAA++
Sbjct: 401 -------------------------------YRDENGKLHLVHTLNGSGLAVGRCVAAIL 429

Query: 330 ESSHDGKGII-WPDSVAPF 347
           E+  +  G +  PD + P+
Sbjct: 430 ENYQNEDGSVTVPDVLVPY 448


>gi|303228838|ref|ZP_07315651.1| serine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516458|gb|EFL58387.1| serine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +    +  
Sbjct: 168 LGARLERALINFMVDLHVDKQGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHV---ENTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHSGEILSEDELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S +   K+  +   +   L L    +   +G IG   +     E  + A 
Sbjct: 285 MVKLS-KPEDSWNELEKLTDNAEEVLRLLELPFRVITLCTGDIGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 NKYREISSCSNMTDFQARRANIKF 367


>gi|253827922|ref|ZP_04870807.1| Seryl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253511328|gb|EES89987.1| Seryl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 20/229 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            ++ +  K    +   + +   + G  E+  P + ++ +   +G+   +  ++ +++D  
Sbjct: 165 VFMGMAAKLERALINYMLDFNTQRGFSEVGTPVIVNSQILFGTGQLPKFENDLFKISDFE 224

Query: 101 DK-----------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
           ++            +   PT E  +T+++ + I    +LP         FR E     R 
Sbjct: 225 EEELDSKEAKKGHELYLIPTAEVTLTNLYNNEILKEEDLPLMMTAYTPCFRKEAGSAGRD 284

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +  +   TP+ S     +M      +   LGL    ++  SG +G  
Sbjct: 285 TRGIIRQHQFDKVELVAI-TTPQDSDIMQERMVACASDLLTSLGLPHRLVQLCSGDLGFS 343

Query: 206 LSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            S+    E  +       ++    +  DF        + D    N +V 
Sbjct: 344 ASNTIDIEVWLPGQNCYREISSISNTRDFQARRAKIRYKDSNKKNLLVH 392


>gi|168240814|ref|ZP_02665746.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194451035|ref|YP_002044956.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|238690614|sp|B4TD24|SYS_SALHS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194409339|gb|ACF69558.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205340363|gb|EDZ27127.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEIRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDQLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|317508691|ref|ZP_07966346.1| histidyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316253012|gb|EFV12427.1| histidyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 432

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 131/447 (29%), Gaps = 69/447 (15%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG+  +LP            + E     G     +P  +   L+V       D  GK
Sbjct: 15  QAPKGVPDYLPPDSVRFVATKRALVEAAELAGYQPAELPVFEDTALYVRGVGESTDIVGK 74

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P     +      H      LP   +     FR E RP+ G  R
Sbjct: 75  EMYTFPDQGGRSLTLRPEWTAGVVRAVVEHGLDRGQLPVKLWYAGPCFRYE-RPQSG--R 131

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL----------------KSIPM 195
            R+F      +  +           +    LR   RLGL                     
Sbjct: 132 YRQFQQMGVEAIGVDDPALDAEVVAVADEGLR---RLGLGGYRLEINSLGDETCRPEYRE 188

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           R  S   G DL       A+    +V   K   +                +S  E +   
Sbjct: 189 RLLSFLRGLDLDEATRQRAERNPLRVLDDK-RPEVKAQLVGAPLLVDCLSDSAKEHFETV 247

Query: 256 YAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKG--AD--GKD 309
            A    +  E              +    E  H    G + ++     + G  AD  G+ 
Sbjct: 248 LAHLRGLGVEYTLSPKLVRGLDYYTKTTFEFVHPG-LGAQSAIGGGGHYDGLVADLGGQQ 306

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                 S G+    +  A  +   DG G     +V  F ++L          ++   ++ 
Sbjct: 307 LPGVGFSIGLERTMLALAAEDIKDDGAG-----AVPVFGVAL------GSAAKERMTRLA 355

Query: 370 ARLSKVGCDVFW---D----------DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             L K    V     D          D     G++F           +I+G   ++    
Sbjct: 356 GELRKADIGVDLAYGDRAMKAAMRAADRS---GARF----------VLILGETELASEHA 402

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           ++K   +G +  + L +V+   + R +
Sbjct: 403 QLKDMRSGEQSAVPLPDVVAELARRIA 429


>gi|229046982|ref|ZP_04192608.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH676]
 gi|229110740|ref|ZP_04240303.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock1-15]
 gi|228672619|gb|EEL27900.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock1-15]
 gi|228724340|gb|EEL75671.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH676]
          Length = 425

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 144/444 (32%), Gaps = 67/444 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRELALRYDLTIPFAKVVAMNPNLR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMAMAF-ELFRTLNLEITIQYNNRKLLNGILQAINIPTEL 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +              +N  
Sbjct: 179 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPL 237

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 238 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGGR 297

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 298 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADLFIIPLG 346

Query: 356 AHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              Q     C +I  +L       V  +  G ++      A+    P  +I+G   +S +
Sbjct: 347 TELQ-----CLQIAQQLRSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTN 401

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
            V +++   G    + +  + NY 
Sbjct: 402 TVVLRNMKEGSEVKVPISSLSNYL 425


>gi|170769264|ref|ZP_02903717.1| seryl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170121916|gb|EDS90847.1| seryl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEIRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|168236873|ref|ZP_02661931.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735850|ref|YP_002114015.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|238693663|sp|B4TRS5|SYS_SALSV RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194711352|gb|ACF90573.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290153|gb|EDY29510.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEIRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDQLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWVPAQNTYREISSCSNVWDF 365


>gi|187929624|ref|YP_001900111.1| seryl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|309781610|ref|ZP_07676344.1| serine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|238691803|sp|B2U9Y5|SYS_RALPJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|187726514|gb|ACD27679.1| seryl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|308919585|gb|EFP65248.1| serine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 438

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 27/257 (10%)

Query: 20  IASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVP 72
           +  H  L    G+         G    +  GQ A     +   + +      G  E  VP
Sbjct: 136 VKDHVDLGAALGLDFDAGAKLSGARFTVLKGQVARLHRALAQFMLDTHTLEHGYTEAYVP 195

Query: 73  TLQSADLWVESGRYDSYGKEMLRL-------ADRND----KAMIYGPTHEEVMTDIFRSH 121
            + +A     +G+   + +++ R+       A+  D    +     PT E  +T++ R  
Sbjct: 196 YIVNAASMRGTGQLPKFEEDLFRVPRKMGHSAEEGDGERVENFYLIPTAEVPLTNLVRDE 255

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I +   LP  F      FR E     +   G++R  +F   +     + PE S  +   M
Sbjct: 256 IVAADTLPMMFAAHSPCFRSEAGSYGKDTRGMIRQHQFDKVEMVQI-VQPETSAAALEAM 314

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                 I  +L L    +   +G +G   +     E  + A     ++    +  DF   
Sbjct: 315 TNCAENILRKLELPFRTVVLCTGDMGFGSTKTYDIEVWIPAQNTYREISSCSNMGDFQAR 374

Query: 234 SENTDFDDIISLNSIVE 250
                F +      +V 
Sbjct: 375 RMQARFRNAQGKPELVH 391


>gi|161486749|ref|YP_507395.2| seryl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 423

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 14/212 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             ++  + +      G  E+S P L         G+   +  +  +  +         PT
Sbjct: 173 RALSNFMLDIHTKEFGYSEISHPILVHESAMYGVGQLPKFADDSFKTTEN----FRLIPT 228

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++  +   +  +LP  F      FR E     R   G+MR  +F   +  S  +
Sbjct: 229 SEVALTNLVSNMNINGCDLPLRFTACSPCFRSEAGSAGRDTRGMMRQHQFNKVELVSI-V 287

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----HEFIVLADTGETQV 221
           T E S     +M      I  RL L    M   +G +G   S     E  + +     ++
Sbjct: 288 TEEQSAPELERMTQIAEEILKRLELPYRVMMLCTGDMGFSASITYDIEVWIPSQNQYREI 347

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               +   F     NT +  II+   + +   
Sbjct: 348 SSCSNCKAFQARRMNTKYTTIINNVKVSKFVH 379


>gi|330817166|ref|YP_004360871.1| Histidyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327369559|gb|AEA60915.1| Histidyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 444

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 134/439 (30%), Gaps = 55/439 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   + ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFESTVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + +   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTLRPENTAAVVRAAIEHNLLY-DGPKRLWYVGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLS 207
           +F      +       +      M     R++  LGL  I +       AE         
Sbjct: 131 QFHQVGVEAIGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 208 HEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +++        E             + ++N    +I      +  +    +       +
Sbjct: 188 IKYLEQHVEVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGESSRAHFDGLQ 247

Query: 266 KLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHYVQ 313
           +L  +            RG++     +F       G + ++     +             
Sbjct: 248 RLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTA 307

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL-INIKAHDQVCRDACEKIYARL 372
              + +G  R++  + E             + P +  + + +    +  R+    I  RL
Sbjct: 308 ACGWAMGVERILELLKEE-----------QLVPEQDGVDVYLVHQGEAAREQAFIIGERL 356

Query: 373 SKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI- 425
              G DV +    D  G     +     AD  G    VI+G   V++    +K       
Sbjct: 357 RDTGLDVIFHCSAD--GASASFKSQMKRADASGAAYAVILGEDEVANGTAGVKALRGAEG 414

Query: 426 ----REDMSLEEVINYASH 440
               ++ +++E +  +  +
Sbjct: 415 EKSAQQTVTVENLTEFLIN 433


>gi|225874558|ref|YP_002756017.1| serine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|254782997|sp|C1F4G5|SYS_ACIC5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225793357|gb|ACO33447.1| serine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 444

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 14/178 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +   G +    + A + +      G  E+  P + ++     +G+   + +++ R  D 
Sbjct: 166 VYWAEGARLERALAAFMLDLHTREHGYTEVLPPLMVNSRSLFGTGQLPKFAEDLFRCEDG 225

Query: 100 N--------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRF 147
                    +      PT E  +T++FR        L  +       FR E     +   
Sbjct: 226 EPYQAGKYRENDHWLIPTAEVPLTNLFRDETLDDSQLSTSLVAHTSCFRSEAGSYGKDVR 285

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           G++R  +F   +   F   PE S   +  +      +  RLGL    M   +G +G  
Sbjct: 286 GIIRQHQFQKVELVKF-TRPEDSAAEHEALTRHAETVLERLGLPYRRMLLCTGDMGFS 342


>gi|77414026|ref|ZP_00790197.1| histidyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77159908|gb|EAO71048.1| histidyl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 129/426 (30%), Gaps = 41/426 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  +IR    +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGESAKWQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF       F      +      M      +F  LG+K++ +   S  +G   
Sbjct: 120 AG--RLREFHQVGVECFGSNNPATDVETIAMG---HHLFEDLGIKNVKLHLNS--LGNPE 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +    A          +   D            + S     +       +  D  +E 
Sbjct: 173 SRQAYRQALIDYLTPIREQLSKDSQRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDES 232

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
               FD++            +      G  Y       F     D +      G Y    
Sbjct: 233 SQAHFDAVCHMLDALNIPYIIDTNMVRGLDYYSHTIFEFITEIEDNELTICAGGRYDGLV 292

Query: 322 MRVVAA-------------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                               +    D +GI  P       + +  + +       A   +
Sbjct: 293 S-YFGGPETPAFGFGLGLERLLLILDKQGISLPIENT-IDLYIAVLGS---EANLAALDL 347

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              +   G  V  D +G +I +QF  AD     + + +GS  V   +V +K+  T     
Sbjct: 348 AQSIRHQGFKVERDYLGRKIKAQFKSADTFNAKVIMTLGSSEVDSKEVGLKNNQTRQEVK 407

Query: 429 MSLEEV 434
           +S E +
Sbjct: 408 VSFENI 413


>gi|69247936|ref|ZP_00604552.1| Histidyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257880300|ref|ZP_05659953.1| histidyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257882155|ref|ZP_05661808.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257885347|ref|ZP_05665000.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257890959|ref|ZP_05670612.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257894214|ref|ZP_05673867.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258614752|ref|ZP_05712522.1| histidyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260562396|ref|ZP_05832910.1| histidyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293552796|ref|ZP_06673456.1| histidyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|293560708|ref|ZP_06677187.1| histidyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|293566142|ref|ZP_06678545.1| histidyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|294618767|ref|ZP_06698294.1| histidyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|294622236|ref|ZP_06701296.1| histidyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314938573|ref|ZP_07845857.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314940918|ref|ZP_07847824.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948061|ref|ZP_07851463.1| histidyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314952054|ref|ZP_07855077.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314991936|ref|ZP_07857391.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314995194|ref|ZP_07860308.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68194638|gb|EAN09125.1| Histidyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257814528|gb|EEV43286.1| histidyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257817813|gb|EEV45141.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257821203|gb|EEV48333.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257827319|gb|EEV53945.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257830593|gb|EEV57200.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260073320|gb|EEW61661.1| histidyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291590068|gb|EFF21860.1| histidyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291594955|gb|EFF26305.1| histidyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291598278|gb|EFF29371.1| histidyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291603043|gb|EFF33235.1| histidyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291605299|gb|EFF34754.1| histidyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313590603|gb|EFR69448.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593520|gb|EFR72365.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313595844|gb|EFR74689.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313600276|gb|EFR79119.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313642130|gb|EFS06710.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645477|gb|EFS10057.1| histidyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 128/435 (29%), Gaps = 31/435 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q  KG    LP   +    V    R         EM  P  +  ++   S     D 
Sbjct: 1   MSFQRPKGTNDILPGESEKWQFVEETARLLFRDYQYNEMRTPIFEHYEVISRSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPR 146
             KEM    D+ ++ +   P     +   F  H         PF  + +   FR E RP+
Sbjct: 61  VSKEMYDFYDKGERHVTLRPEGTAPIVRSFVEHKLFGPEYAKPFKTFYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F      +F    E        M ++ L  F +LG+  I  R     +G   
Sbjct: 120 KG--RLRQFHQIGVEAFGS--ENPATDVESMVMA-LDFFKQLGITQI--RLVINSLGDKE 172

Query: 207 SHEFIVLADTG-----ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           + +    A        E+++           P    D  D      + E  +     +  
Sbjct: 173 TRQAYRQALIDYLLPFESELSEDSKRRLHENPLRVLDSKDKRDQKFVAEAPSILDYLSEP 232

Query: 262 VHNEKLFDSLPENKRVSARGIEV----GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                       +       I+     G  +Y  T + +   A   GA  +      G Y
Sbjct: 233 AQKHFDTVVSMLDALAVPYEIDSNMVRGLDYYTHTIFEIMSDAPKMGA--QATICAGGRY 290

Query: 318 GIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDA-------CEKIY 369
                 +            GI     ++   ++ +      D               K+ 
Sbjct: 291 DNLVEELGGPSTPGFGFAMGIERLLLTMEAEEVVIPAFNELDAYVVALGDETNIEALKVV 350

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             +   G     D M  +  +QF  AD     L +++G   ++   + +K   +   +  
Sbjct: 351 QAIRNFGFSADRDFMNRKAKAQFKTADKANAKLVLVIGEDELASQTINVKAMASRKEKSF 410

Query: 430 SLEEVINYASHRFSN 444
            LEE+  +    +  
Sbjct: 411 PLEEIYEHFDEVYDE 425


>gi|313142486|ref|ZP_07804679.1| seryl-tRNA synthetase synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313131517|gb|EFR49134.1| seryl-tRNA synthetase synthetase [Helicobacter canadensis MIT
           98-5491]
          Length = 423

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 20/229 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            ++ +  K    +   + +   + G  E+  P + ++ +   +G+   +  ++ +++D  
Sbjct: 158 VFMGMAAKLERALINYMLDFNTQRGFSEVGTPVIVNSQILFGTGQLPKFENDLFKISDFE 217

Query: 101 DK-----------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
           ++            +   PT E  +T+++ + I    +LP         FR E     R 
Sbjct: 218 EEELDSKEAKKGHELYLIPTAEVTLTNLYNNEILKEEDLPLMMTAYTPCFRKEAGSAGRD 277

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +  +   TP+ S     +M      +   LGL    ++  SG +G  
Sbjct: 278 TRGIIRQHQFDKVELVAI-TTPQDSDIMQERMVACASDLLTSLGLPHRLVQLCSGDLGFS 336

Query: 206 LSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            S+    E  +       ++    +  DF        + D    N +V 
Sbjct: 337 ASNTIDIEVWLPGQNCYREISSISNTRDFQARRAKIRYKDSNKKNLLVH 385


>gi|297544412|ref|YP_003676714.1| glycyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842187|gb|ADH60703.1| glycyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 462

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 123/368 (33%), Gaps = 77/368 (20%)

Query: 93  MLR----LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M +    + + +   +   P   + +   F++    + + +PF   QI   FR+E+ P  
Sbjct: 154 MFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+REF            E  +  +                                 
Sbjct: 214 FIFRTREF------------EQMELEF--------------------------------- 228

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             F    +  E   +  K  MD+ +       +     +   E      A T   +N   
Sbjct: 229 --FCKPGEDMEWFNYWRKYCMDWLLEFGLKKENLRFRDHKKEELSHYSTATTDIEYNFPF 286

Query: 268 FDSLPENKRVSARG-IEV-GHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRV 324
                E   ++ R   ++  H+ + G   S      +   A G+ +        +G  R+
Sbjct: 287 G--WGELWGIANRTDFDLRQHMEHSGVDLS------YMDPATGEKYIPYCIEPSVGVDRL 338

Query: 325 VAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           + A +  +++ +          +    ++AP K +++ +        +   K+Y +L   
Sbjct: 339 MLAFLIDAYEEEELENGETRVVLRLHPALAPIKAAVLPLSKK---LSENAYKLYDQLRNK 395

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V +D+ G  IG ++   D +G P  +       +D  V I+ R T  +  + +EEV 
Sbjct: 396 FV-VDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDHCVTIRDRDTMEQVRIKIEEVE 453

Query: 436 NYASHRFS 443
            Y   R +
Sbjct: 454 KYLEERLN 461


>gi|78188020|ref|YP_378358.1| glycyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|78170219|gb|ABB27315.1| glycyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 489

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 70/469 (14%), Positives = 144/469 (30%), Gaps = 63/469 (13%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G +   S         + + PLG +    +  +      R     + +    + +
Sbjct: 26  LAKRRGFVFPSSEIYEGLSACFDYGPLGSEMKRTIKELWWNAMTRRHQNIVGIDASIMMN 85

Query: 77  ADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHE-------EVMTDIFRSHIK--- 123
             +W  SG   S+   M+       R     +     E       E      ++  +   
Sbjct: 86  PRVWEASGHVASFNDPMIDDKTTKRRYRADHLIENHIEKLRRDGKEEALQRVQATYEAVG 145

Query: 124 SYRNLPFTFYQI----QLKFRDELRPRFGVMRSREF----------LMKDAYSFDLTPEG 169
           S  +     Y++     +K  D     +     R+F          L   +    L PE 
Sbjct: 146 STEDSNRALYELILAEGIKAPDTGSADWT--EVRQFNLMFQCNMGALSDRSGIVYLRPET 203

Query: 170 SKHSYNKMFVS--YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           ++  +          R+    G+  I     +  + G+ +   +V  +  E Q F     
Sbjct: 204 AQGIFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFTFR-MVEFEQMEMQYFVKPGT 262

Query: 228 MDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                 +   + F   ++   I       Y      H   L   +          IE  H
Sbjct: 263 QLEAFEAWREERFAWYVNSLGITPSKLHWYKHDKLAHYADLAYDIKFEFPFGIEEIEGIH 322

Query: 287 IFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG- 337
                T + L     + G +         + +   +     G  R+  A++  ++     
Sbjct: 323 SR---TDFDLKQHQEYSGKNMEYIDQTTNERYIPYVVETSAGCDRLFLALLADAYTEDVV 379

Query: 338 -------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                  +     VAP K +++ +        +    +   LS     V +DD G  IG 
Sbjct: 380 DGEERVVLRLAPRVAPVKAAILPL-MKKGGLGEKAMALCNELSSSYL-VQYDDAG-SIGK 436

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++   D +G P  + V  + + D  V +++R +  +E ++L  V  + +
Sbjct: 437 RYRRQDEIGTPFCITVDHQSLEDESVTVRYRDSAAQERIALSRVQEFLA 485


>gi|121998174|ref|YP_001002961.1| seryl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|166222731|sp|A1WWU7|SYS_HALHL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|121589579|gb|ABM62159.1| seryl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 425

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 20/237 (8%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQ- 61
           +P L   PRD       L    GM  + +    G       G   +    +   + +   
Sbjct: 129 IPALSFKPRDHVDLGELL---GGMDFEAAARIAGSRFVTLSGPLARLHRALTQFMLDLHC 185

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+ VP L +A     +G+   +  ++ R+   +D ++   PT E  +T++ +  
Sbjct: 186 REHGYTEVYVPYLVNARSLTGTGQLPKFEDDLFRV--EHDPSLYLAPTAEVPVTNLVQER 243

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    ++P  F      FR E     +   G++R  +F   +     + P  S  +   +
Sbjct: 244 IVEDADMPLRFVCHTPCFRSEAGSYGKDTRGMIRQHQFEKVELVQV-VRPGESWDALEAL 302

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
                 +  RL L    +    G IG   +     E  + A     ++    +F DF
Sbjct: 303 TGHAETVLRRLALPYRVVSLCGGDIGFSAARTYDLEVWLPAQERYREISSCSNFTDF 359


>gi|282874728|ref|ZP_06283607.1| serine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|281296444|gb|EFA88959.1| serine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|329736077|gb|EGG72350.1| serine--tRNA ligase [Staphylococcus epidermidis VCU045]
          Length = 428

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPELFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 287 VRI-VQPEDSWNALEEMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|319740161|gb|ADV60374.1| glu- + pro-tRNA synthetase [Endromis versicolora]
          Length = 134

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R ++     + G  +S      +   D  +  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAVQGATSHHLGQNFSKMFEIVYDDPDTQEKKYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             +   D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRVADIQAIVVPCGVTASSGADERKSLIDSCKALVEDLVAAGVRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|57237444|ref|YP_178457.1| seryl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|67461625|sp|Q5HW78|SYS_CAMJR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|57166248|gb|AAW35027.1| seryl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|315057812|gb|ADT72141.1| Seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 411

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   + ++M ++   +D+ + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKV---DDEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++   I +   LP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S   T E S   +N+M      +   LGL    +   +G +G   +     E  +     
Sbjct: 283 SITKT-EQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 YREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|260597297|ref|YP_003209868.1| seryl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260216474|emb|CBA29619.1| Seryl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +  T  GM    +    G    +  GQ A     ++  + +      G  E
Sbjct: 133 DFEIRDHVTLGETLGGMDFASAVKLTGSRFVVMKGQIARLHRALSQFMLDLHTEEHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EETLPVKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMQALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   SG +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKVLLCSGDMGFGARKTYDLEVWLPAQDTYREISSCSNMWDF 365


>gi|241663731|ref|YP_002982091.1| seryl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240865758|gb|ACS63419.1| seryl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 438

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 84/257 (32%), Gaps = 27/257 (10%)

Query: 20  IASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVP 72
           +  H  L    G+         G    +  GQ A     +   + +      G  E  VP
Sbjct: 136 VKDHVDLGAALGLDFDAGAKLSGARFTVLKGQVARLHRALAQFMLDTHTLEHGYTEAYVP 195

Query: 73  TLQSADLWVESGRYDSYGKEMLRL----------ADRND-KAMIYGPTHEEVMTDIFRSH 121
            + +A     +G+   + +++ R+           D    +     PT E  +T++ R  
Sbjct: 196 YIVNAASMRGTGQLPKFEEDLFRVPRKMGHSAEGEDGERVENFYLIPTAEVPLTNLVRDE 255

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I +   LP  F      FR E     +   G++R  +F   +     + P+ S  +   M
Sbjct: 256 IVAADALPMMFAAHSPCFRSEAGSYGKDTRGMIRQHQFDKVEMVQI-VQPQTSFDALEAM 314

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
             +   I  +L L    +   +G +G   +     E  + A     ++    +  DF   
Sbjct: 315 TNAAENILRKLELPFRTVVLCTGDMGFGSTKTYDIEVWIPAQNTYREISSCSNMGDFQAR 374

Query: 234 SENTDFDDIISLNSIVE 250
                F +      +V 
Sbjct: 375 RMQARFRNAQGKPELVH 391


>gi|148827508|ref|YP_001292261.1| histidyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166227972|sp|A5UGH2|SYH_HAEIG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|148718750|gb|ABQ99877.1| hypothetical protein CGSHiGG_04655 [Haemophilus influenzae PittGG]
          Length = 423

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 140/428 (32%), Gaps = 49/428 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIILTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+ ++  +  +  V      +D   P       D            +             
Sbjct: 187 HQDLMSDEEKDRLVKNPLRILDTKNPE-LQKVLDNAPKLLDYLDDESREHFEQLCSLLDA 245

Query: 268 FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
            D   E      RG++     +F       G + ++     + G       H      + 
Sbjct: 246 VDIQYEINPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFA 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKV 375
           +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L   
Sbjct: 306 MGLERLVLLVQEVN-----PNVPVKSA---VDIYVVYQGEGTTLAAFELAEKVRSELP-- 355

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEV 434
             +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  V
Sbjct: 356 HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGADQQTLDLVNV 415

Query: 435 INYASHRF 442
           I+Y   +F
Sbjct: 416 IDYIQTQF 423


>gi|75907945|ref|YP_322241.1| seryl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|123609900|sp|Q3MCE0|SYS_ANAVT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|75701670|gb|ABA21346.1| seryl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+S P L + D    +G+   + +E  + AD     + 
Sbjct: 175 GAALERALINFMLKTQTVAGYVEVSPPLLVNTDSLTGTGQLPKFAEESFKCAD---DELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  NLP         FR E     R   G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILAAENLPIYHCAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S     K+  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 292 KV-VHPSTSFDELEKLVGNAEAILQALKLPYRVINLCTGDLGFGATKTYDLEVWLPSSGK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     +  F +
Sbjct: 351 YREISSCSNCFDFQARRADIRFKE 374


>gi|193070743|ref|ZP_03051678.1| seryl-tRNA synthetase [Escherichia coli E110019]
 gi|192955936|gb|EDV86404.1| seryl-tRNA synthetase [Escherichia coli E110019]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|187730384|ref|YP_001880909.1| seryl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|238691690|sp|B2TUI5|SYS_SHIB3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|187427376|gb|ACD06650.1| seryl-tRNA synthetase [Shigella boydii CDC 3083-94]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|73747962|ref|YP_307201.1| histidyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|147668658|ref|YP_001213476.1| histidyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|83305868|sp|Q3ZWB6|SYH_DEHSC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082292|sp|A5FSR7|SYH_DEHSB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|73659678|emb|CAI82285.1| histidyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|146269606|gb|ABQ16598.1| histidyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 418

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/438 (14%), Positives = 127/438 (28%), Gaps = 47/438 (10%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           ++Q  +G    LP  Q     V           G      P  + A L+V S     D  
Sbjct: 1   MYQSPRGTEDILPEDQPYWHFVRQQAARIAALYGYQRTDTPVFEDAGLFVRSVGEGTDIV 60

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            KEM    DR    +   P     +   +  H    R  P   Y +   FR + RP+ G 
Sbjct: 61  SKEMYTFEDRGGDKLTLRPEGTAPVCRAYLEHGMQTRTKPVKLYYLSSIFRYD-RPQAG- 118

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIG 203
            R R+       +             +M       ++ LG+  + +   S       P  
Sbjct: 119 -RYRQHHQFGFEAIGEADASLDAEIIEM---AWSFYNLLGITDLSLELNSIGCRQCRPNY 174

Query: 204 GDLSHEFIVLA------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                ++                D    ++   K      +        D +  + +   
Sbjct: 175 ISALKDYYQQHAGKLCPDCNTRLDKNTLRLLDCKRAECQAVAGNAPRSADYLCPDCLAHY 234

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKD 309
                          + D          RG++     +F       +   A      G  
Sbjct: 235 SRLKECL-------TILDLPFHENFRLVRGLDYYSRTVFEIQ---PMAEGAQSTIGGGGR 284

Query: 310 HYVQMGSYGIGAMRVVAAV-----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +   +   G  A   +        I  +   +GI+ P   +P     + +    +    A
Sbjct: 285 YDGLIEQLGGEATPAMGFATGIERIILNLKRQGIV-P---SPLPSPAVFLAYMGETASLA 340

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + + L K G  ++     + I +Q   A+ LG    VI+G + +      +++    
Sbjct: 341 SFALASDLRKAGIGIYQTYAQKSIKAQLRQANSLGVDWVVILGEEELKQGCAVLRNMKEA 400

Query: 425 IREDMSLEEVINYASHRF 442
            + ++ L+++I     + 
Sbjct: 401 GQANIPLDQLICEIKKQI 418


>gi|297623943|ref|YP_003705377.1| seryl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165123|gb|ADI14834.1| seryl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 103/331 (31%), Gaps = 71/331 (21%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L L  G +     G   +   G + L  +N          G  E++VP L +A+    +G
Sbjct: 152 LDLEAG-VKTTGAGFPVFKGPGARLLRALNTYCLNALVAAGYTEVAVPLLVNAESATATG 210

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL- 143
           +      +M  L D         PT E  +T++ R  I     LP  +      FR E  
Sbjct: 211 QLPDKEGQMYELRD----GFYLIPTSELALTNLHRGEILDAAELPLRYAAQTPCFRREAG 266

Query: 144 ---RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
                  GV R  +F   +   F   P+ S  +  +M      +   LG+    +   +G
Sbjct: 267 SYGAHVRGVNRVHQFDKVEMVQF-THPDRSFEALEEMAAFAESLLETLGMPYRRLLMCTG 325

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            +G          A   + +V+ +       + S +   D                    
Sbjct: 326 DMG-------FTQAKKYDLEVWSAGQGRWLEVSSVSNITDF------------------- 359

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY--- 317
                                         GT++         GA G+     + +    
Sbjct: 360 -------------------------QARRLGTRFRE------GGAQGRGKPELVHTLNGS 388

Query: 318 GIGAMRVVAAVIESSHDGKGII-WPDSVAPF 347
             G +R+ AA++E++    G +  P+ + P+
Sbjct: 389 AFGMVRLFAALLENAQHEDGTVSVPEPLQPY 419


>gi|297587952|ref|ZP_06946596.1| serine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297574641|gb|EFH93361.1| serine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 421

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 11/215 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    +   + +   ++ G  EM+ P L S    + +G+   + ++M          
Sbjct: 168 KGARLERALMNFMVDLHTDKQGYTEMNTPVLMSPSAMMGTGQIPKFKEDMFYC---EKDD 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           M   PT E  +T++    I    +LP  +      FR E     R   G++R+ +F   +
Sbjct: 225 MYLAPTAEVPVTNLLAGEILEQGSLPIYYTAFTQCFRREAGSAGRDTRGLIRNHQFEKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTG 217
              F + P  S     K+  +   I   L +    +R  SG +G    ++++  V   + 
Sbjct: 285 MVKF-VEPSTSYDELEKLTNNAEEILQLLEIPYRVVRLCSGDLGFSSAMTYDVEVWMPSY 343

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              V  S         +   +       N      
Sbjct: 344 NRYVEISSCSNFEDFQARRANIRYRDENNKPQYVH 378


>gi|89256780|ref|YP_514142.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115315171|ref|YP_763894.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502942|ref|YP_001429007.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010731|ref|ZP_02275662.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368068|ref|ZP_04984088.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|122324830|sp|Q0BKX7|SYS_FRATO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122500428|sp|Q2A2B0|SYS_FRATH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166221439|sp|A7NDJ8|SYS_FRATF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|89144611|emb|CAJ79930.1| Seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115130070|gb|ABI83257.1| serine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253878|gb|EBA52972.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253545|gb|ABU62051.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    ++  + +    + G  E+ VP L + D    +G+   +   + +L    D  
Sbjct: 170 KIAKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAANLFKL--EGDFE 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 228 YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 T +  + S   +     ++  +L L    M+  +G +G         E  + + 
Sbjct: 288 LVHI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 347 NTYREISSCSWCGDF 361


>gi|182420365|ref|ZP_02951587.1| histidyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237668877|ref|ZP_04528861.1| histidine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375731|gb|EDT73329.1| histidyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657225|gb|EEP54781.1| histidine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 419

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 134/430 (31%), Gaps = 38/430 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V ++ R      G  E+  P  +  +L++       D   K
Sbjct: 6   QAPKGTKDMLPQDAYKWHYVESVFRNVTKTYGIREIRTPIFEHTELFLRGVGDTTDIVQK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+ D+++   P         F  +       P   Y I   FR E        R
Sbjct: 66  EMYTFNDKGDRSITLKPEGTAPAVRAFVENRLFNEAQPTKLYYITPAFRYE---NVQKGR 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP----------MRAESGP 201
            R+F       F            K+    +    +LGLKS+            RA+   
Sbjct: 123 LRQFHQCGIEMFGSKEPTMDVEAIKV---AMDTLSKLGLKSLSLHINNLGCPTCRAKYNE 179

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E            F            +  +     +   +           + 
Sbjct: 180 ALKKFLQENYENLCDTCKSRFEKNPMRILDCKEKRCNEITKNAPQILDYVCEECETHFNS 239

Query: 262 VHNEKLFDSLPE-NKRVSARGIEVG--HIFY-FGTKYSLPMSATF---KGADGKDHYVQM 314
           V        +P    +   RG++     IF      +++     +       G      +
Sbjct: 240 VKEYLDVLEIPYEIDQGIVRGLDYYTKTIFEIINDDFTVCGGGRYDKLISELGGPEMPAV 299

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G + IG  R++  +     + +GI  P+      +  + I A  +  +    K+ + L  
Sbjct: 300 G-FAIGVERIIMTL-----ENEGIEIPNDN----LIDLYIAARGEEEKKTAFKLASDLRT 349

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL--- 431
           +G     + MG  I ++   A+ LG     I+G   +++ K+ +K    G   + SL   
Sbjct: 350 LGGKCEINHMGRSIKAEMKFANKLGAAFTTILGEDELANKKINLKRMSDGEIFEASLENT 409

Query: 432 EEVINYASHR 441
           EE++   S +
Sbjct: 410 EEIVKIISAK 419


>gi|157369929|ref|YP_001477918.1| seryl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166987317|sp|A8GCF0|SYS_SERP5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157321693|gb|ABV40790.1| seryl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 16/209 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     ++  + +    + G  E  VP L +      +G+   +G+++
Sbjct: 158 TGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYQETYVPYLVNHATLFGTGQLPKFGEDL 217

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                  +++        PT E  +T++ R  I    +LP         FR E     R 
Sbjct: 218 FHTKPLEEESDSSNYALIPTAEVPLTNLVRDEILEEESLPLKMTAHTPCFRAEAGSYGRD 277

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-- 203
             G++R  +F   +     + PE S  +  ++     ++   L L    M   +G +G  
Sbjct: 278 TRGLIRMHQFDKVEMVQI-VRPEDSMTTLEELTGHAEKVLQLLNLPYRKMLLCTGDMGAG 336

Query: 204 --GDLSHEFIVLADTGETQVFCSKDFMDF 230
                  E  + A     ++    +  D+
Sbjct: 337 SCKTYDLEVWLPAQDTYREISSCSNMWDY 365


>gi|15830232|ref|NP_309005.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|16128860|ref|NP_415413.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli str. K-12 substr. MG1655]
 gi|24112268|ref|NP_706778.1| seryl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|26246919|ref|NP_752959.1| seryl-tRNA synthetase [Escherichia coli CFT073]
 gi|30062380|ref|NP_836551.1| seryl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|74311451|ref|YP_309870.1| seryl-tRNA synthetase [Shigella sonnei Ss046]
 gi|82543379|ref|YP_407326.1| seryl-tRNA synthetase [Shigella boydii Sb227]
 gi|89107743|ref|AP_001523.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli str. K-12 substr. W3110]
 gi|91209938|ref|YP_539924.1| seryl-tRNA synthetase [Escherichia coli UTI89]
 gi|110641093|ref|YP_668823.1| seryl-tRNA synthetase [Escherichia coli 536]
 gi|110804894|ref|YP_688414.1| seryl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|117623077|ref|YP_851990.1| seryl-tRNA synthetase [Escherichia coli APEC O1]
 gi|157157556|ref|YP_001462091.1| seryl-tRNA synthetase [Escherichia coli E24377A]
 gi|157160416|ref|YP_001457734.1| seryl-tRNA synthetase [Escherichia coli HS]
 gi|168752125|ref|ZP_02777147.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168756984|ref|ZP_02781991.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|168762973|ref|ZP_02787980.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168769886|ref|ZP_02794893.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168776256|ref|ZP_02801263.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168783803|ref|ZP_02808810.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168787321|ref|ZP_02812328.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168801425|ref|ZP_02826432.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|170020705|ref|YP_001725659.1| seryl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|170080551|ref|YP_001729871.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli str. K-12 substr. DH10B]
 gi|170683015|ref|YP_001744277.1| seryl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188492608|ref|ZP_02999878.1| seryl-tRNA synthetase [Escherichia coli 53638]
 gi|191167614|ref|ZP_03029425.1| seryl-tRNA synthetase [Escherichia coli B7A]
 gi|191172133|ref|ZP_03033677.1| seryl-tRNA synthetase [Escherichia coli F11]
 gi|193064674|ref|ZP_03045753.1| seryl-tRNA synthetase [Escherichia coli E22]
 gi|194428395|ref|ZP_03060936.1| seryl-tRNA synthetase [Escherichia coli B171]
 gi|194438706|ref|ZP_03070793.1| seryl-tRNA synthetase [Escherichia coli 101-1]
 gi|195939556|ref|ZP_03084938.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208808989|ref|ZP_03251326.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208815536|ref|ZP_03256715.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208822033|ref|ZP_03262352.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209396596|ref|YP_002269566.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209918142|ref|YP_002292226.1| seryl-tRNA synthetase [Escherichia coli SE11]
 gi|215486023|ref|YP_002328454.1| seryl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|217326397|ref|ZP_03442481.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218553479|ref|YP_002386392.1| seryl-tRNA synthetase [Escherichia coli IAI1]
 gi|218557801|ref|YP_002390714.1| seryl-tRNA synthetase [Escherichia coli S88]
 gi|218688681|ref|YP_002396893.1| seryl-tRNA synthetase [Escherichia coli ED1a]
 gi|218694366|ref|YP_002402033.1| seryl-tRNA synthetase [Escherichia coli 55989]
 gi|218700589|ref|YP_002408218.1| seryl-tRNA synthetase [Escherichia coli IAI39]
 gi|218704322|ref|YP_002411841.1| seryl-tRNA synthetase [Escherichia coli UMN026]
 gi|227884140|ref|ZP_04001945.1| seryl-tRNA synthetase [Escherichia coli 83972]
 gi|237707117|ref|ZP_04537598.1| seryl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238900151|ref|YP_002925947.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli BW2952]
 gi|253774078|ref|YP_003036909.1| seryl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161007|ref|YP_003044115.1| seryl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|254792093|ref|YP_003076930.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|256020979|ref|ZP_05434844.1| seryl-tRNA synthetase [Shigella sp. D9]
 gi|256023406|ref|ZP_05437271.1| seryl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|260843143|ref|YP_003220921.1| seryl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260854184|ref|YP_003228075.1| seryl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260867065|ref|YP_003233467.1| seryl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|261227398|ref|ZP_05941679.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256179|ref|ZP_05948712.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281896|ref|YP_003498714.1| Seryl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|293404200|ref|ZP_06648194.1| seryl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|293409271|ref|ZP_06652847.1| seryl-tRNA synthetase [Escherichia coli B354]
 gi|293414175|ref|ZP_06656824.1| seryl-tRNA synthetase [Escherichia coli B185]
 gi|293433190|ref|ZP_06661618.1| seryl-tRNA synthetase [Escherichia coli B088]
 gi|297518813|ref|ZP_06937199.1| seryl-tRNA synthetase [Escherichia coli OP50]
 gi|298379981|ref|ZP_06989586.1| seryl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300817005|ref|ZP_07097224.1| seryl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300823632|ref|ZP_07103759.1| seryl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300896500|ref|ZP_07115024.1| seryl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300902950|ref|ZP_07120894.1| seryl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300921073|ref|ZP_07137457.1| seryl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300926531|ref|ZP_07142320.1| seryl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300929586|ref|ZP_07145049.1| seryl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300937613|ref|ZP_07152422.1| seryl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300949747|ref|ZP_07163724.1| seryl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300954716|ref|ZP_07167151.1| seryl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300978543|ref|ZP_07174296.1| seryl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300983196|ref|ZP_07176475.1| seryl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|301022878|ref|ZP_07186711.1| seryl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301024412|ref|ZP_07188097.1| seryl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|301047849|ref|ZP_07194899.1| seryl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|301302500|ref|ZP_07208631.1| seryl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|301325784|ref|ZP_07219232.1| seryl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|301646338|ref|ZP_07246226.1| seryl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|306812651|ref|ZP_07446844.1| seryl-tRNA synthetase [Escherichia coli NC101]
 gi|307137521|ref|ZP_07496877.1| seryl-tRNA synthetase [Escherichia coli H736]
 gi|307311720|ref|ZP_07591360.1| seryl-tRNA synthetase [Escherichia coli W]
 gi|309795298|ref|ZP_07689716.1| seryl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|312969039|ref|ZP_07783246.1| seryl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312971020|ref|ZP_07785199.1| seryl-tRNA synthetase [Escherichia coli 1827-70]
 gi|331641414|ref|ZP_08342549.1| serine--tRNA ligase [Escherichia coli H736]
 gi|331646160|ref|ZP_08347263.1| serine--tRNA ligase [Escherichia coli M605]
 gi|331651912|ref|ZP_08352931.1| serine--tRNA ligase [Escherichia coli M718]
 gi|331656965|ref|ZP_08357927.1| serine--tRNA ligase [Escherichia coli TA206]
 gi|331662308|ref|ZP_08363231.1| serine--tRNA ligase [Escherichia coli TA143]
 gi|331667267|ref|ZP_08368132.1| serine--tRNA ligase [Escherichia coli TA271]
 gi|331672434|ref|ZP_08373224.1| serine--tRNA ligase [Escherichia coli TA280]
 gi|331676680|ref|ZP_08377376.1| serine--tRNA ligase [Escherichia coli H591]
 gi|331682402|ref|ZP_08383021.1| serine--tRNA ligase [Escherichia coli H299]
 gi|332282204|ref|ZP_08394617.1| seryl-tRNA synthetase [Shigella sp. D9]
 gi|67473027|sp|P0A8L1|SYS_ECOLI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67473028|sp|P0A8L2|SYS_ECOL6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67473029|sp|P0A8L3|SYS_ECO57 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67473030|sp|P0A8L4|SYS_SHIFL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122424423|sp|Q1RE21|SYS_ECOUT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122957696|sp|Q0T8M9|SYS_SHIF8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123049332|sp|Q0TJF7|SYS_ECOL5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123617600|sp|Q3Z3M7|SYS_SHISS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123755624|sp|Q323L0|SYS_SHIBS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166221437|sp|A1A9D6|SYS_ECOK1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166987311|sp|A7ZJW2|SYS_ECO24 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166987312|sp|A7ZYJ7|SYS_ECOHS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083568|sp|B1IWN0|SYS_ECOLC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701391|sp|B7MHK5|SYS_ECO45 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701392|sp|B7NM82|SYS_ECO7I RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701393|sp|B7M821|SYS_ECO8A RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701394|sp|B7NAP4|SYS_ECOLU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226701395|sp|B1LJX0|SYS_ECOSM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229559900|sp|B1X833|SYS_ECODH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238065099|sp|B5YT28|SYS_ECO5E RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238065100|sp|B6I8W4|SYS_ECOSE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783025|sp|B7UMY4|SYS_ECO27 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783026|sp|B7LD85|SYS_ECO55 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783027|sp|B7MRV6|SYS_ECO81 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|259511667|sp|C4ZQ19|SYS_ECOBW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|26107319|gb|AAN79502.1|AE016758_106 Seryl-tRNA synthetase [Escherichia coli CFT073]
 gi|42950|emb|CAA28673.1| unnamed protein product [Escherichia coli]
 gi|1651420|dbj|BAA35625.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli str. K12 substr. W3110]
 gi|1787120|gb|AAC73979.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli str. K-12 substr. MG1655]
 gi|13360437|dbj|BAB34401.1| serine tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|24051120|gb|AAN42485.1| serine tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30040626|gb|AAP16357.1| serine tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|73854928|gb|AAZ87635.1| serine tRNA synthetase [Shigella sonnei Ss046]
 gi|81244790|gb|ABB65498.1| serine tRNA synthetase [Shigella boydii Sb227]
 gi|91071512|gb|ABE06393.1| seryl-tRNA synthetase [Escherichia coli UTI89]
 gi|110342685|gb|ABG68922.1| seryl-tRNA synthetase [Escherichia coli 536]
 gi|110614442|gb|ABF03109.1| serine tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|115512201|gb|ABJ00276.1| seryl-tRNA synthetase [Escherichia coli APEC O1]
 gi|157066096|gb|ABV05351.1| seryl-tRNA synthetase [Escherichia coli HS]
 gi|157079586|gb|ABV19294.1| seryl-tRNA synthetase [Escherichia coli E24377A]
 gi|169755633|gb|ACA78332.1| seryl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|169888386|gb|ACB02093.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli str. K-12 substr. DH10B]
 gi|170520733|gb|ACB18911.1| seryl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|187768390|gb|EDU32234.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188013954|gb|EDU52076.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|188487807|gb|EDU62910.1| seryl-tRNA synthetase [Escherichia coli 53638]
 gi|188998912|gb|EDU67898.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189355936|gb|EDU74355.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189361156|gb|EDU79575.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189366796|gb|EDU85212.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189372720|gb|EDU91136.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189376450|gb|EDU94866.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|190902375|gb|EDV62113.1| seryl-tRNA synthetase [Escherichia coli B7A]
 gi|190907660|gb|EDV67255.1| seryl-tRNA synthetase [Escherichia coli F11]
 gi|192927731|gb|EDV82346.1| seryl-tRNA synthetase [Escherichia coli E22]
 gi|194413610|gb|EDX29891.1| seryl-tRNA synthetase [Escherichia coli B171]
 gi|194422338|gb|EDX38338.1| seryl-tRNA synthetase [Escherichia coli 101-1]
 gi|208728790|gb|EDZ78391.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208732184|gb|EDZ80872.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208737518|gb|EDZ85201.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209157996|gb|ACI35429.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209775018|gb|ACI85821.1| serine tRNA synthetase [Escherichia coli]
 gi|209775020|gb|ACI85822.1| serine tRNA synthetase [Escherichia coli]
 gi|209775022|gb|ACI85823.1| serine tRNA synthetase [Escherichia coli]
 gi|209775024|gb|ACI85824.1| serine tRNA synthetase [Escherichia coli]
 gi|209775026|gb|ACI85825.1| serine tRNA synthetase [Escherichia coli]
 gi|209911401|dbj|BAG76475.1| seryl-tRNA synthase [Escherichia coli SE11]
 gi|215264095|emb|CAS08437.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli O127:H6 str. E2348/69]
 gi|217322618|gb|EEC31042.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218351098|emb|CAU96802.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli 55989]
 gi|218360247|emb|CAQ97797.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli IAI1]
 gi|218364570|emb|CAR02256.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli S88]
 gi|218370575|emb|CAR18382.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli IAI39]
 gi|218426245|emb|CAR07070.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli ED1a]
 gi|218431419|emb|CAR12297.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli UMN026]
 gi|222032627|emb|CAP75366.1| Seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli LF82]
 gi|226898327|gb|EEH84586.1| seryl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|227838892|gb|EEJ49358.1| seryl-tRNA synthetase [Escherichia coli 83972]
 gi|238863546|gb|ACR65544.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli BW2952]
 gi|242376708|emb|CAQ31421.1| seryl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253325122|gb|ACT29724.1| seryl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972908|gb|ACT38579.1| seryl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253977122|gb|ACT42792.1| seryl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|254591493|gb|ACT70854.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli O157:H7 str. TW14359]
 gi|257752833|dbj|BAI24335.1| seryl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257758290|dbj|BAI29787.1| seryl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257763421|dbj|BAI34916.1| seryl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|260449961|gb|ACX40383.1| seryl-tRNA synthetase [Escherichia coli DH1]
 gi|281178027|dbj|BAI54357.1| seryl-tRNA synthetase [Escherichia coli SE15]
 gi|281600221|gb|ADA73205.1| Seryl-tRNA synthetase [Shigella flexneri 2002017]
 gi|284920746|emb|CBG33809.1| seryl-tRNA synthetase [Escherichia coli 042]
 gi|290761769|gb|ADD55730.1| Seryl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|291324009|gb|EFE63431.1| seryl-tRNA synthetase [Escherichia coli B088]
 gi|291428786|gb|EFF01811.1| seryl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|291434233|gb|EFF07206.1| seryl-tRNA synthetase [Escherichia coli B185]
 gi|291469739|gb|EFF12223.1| seryl-tRNA synthetase [Escherichia coli B354]
 gi|294493263|gb|ADE92019.1| seryl-tRNA synthetase [Escherichia coli IHE3034]
 gi|298279679|gb|EFI21187.1| seryl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|299880384|gb|EFI88595.1| seryl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300300277|gb|EFJ56662.1| seryl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300306960|gb|EFJ61480.1| seryl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300318327|gb|EFJ68111.1| seryl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300359649|gb|EFJ75519.1| seryl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300397340|gb|EFJ80878.1| seryl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300405011|gb|EFJ88549.1| seryl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300409622|gb|EFJ93160.1| seryl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300411924|gb|EFJ95234.1| seryl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300417448|gb|EFK00759.1| seryl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300450861|gb|EFK14481.1| seryl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300457343|gb|EFK20836.1| seryl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300462474|gb|EFK25967.1| seryl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300523832|gb|EFK44901.1| seryl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300530357|gb|EFK51419.1| seryl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300842339|gb|EFK70099.1| seryl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300847427|gb|EFK75187.1| seryl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|301075441|gb|EFK90247.1| seryl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|305853414|gb|EFM53853.1| seryl-tRNA synthetase [Escherichia coli NC101]
 gi|306908275|gb|EFN38774.1| seryl-tRNA synthetase [Escherichia coli W]
 gi|307552735|gb|ADN45510.1| serine tRNA synthetase [Escherichia coli ABU 83972]
 gi|307627677|gb|ADN71981.1| seryl-tRNA synthetase [Escherichia coli UM146]
 gi|308120948|gb|EFO58210.1| seryl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|309701169|emb|CBJ00469.1| seryl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|310336781|gb|EFQ01948.1| seryl-tRNA synthetase [Escherichia coli 1827-70]
 gi|312286441|gb|EFR14354.1| seryl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312945416|gb|ADR26243.1| seryl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313650195|gb|EFS14607.1| seryl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|315060178|gb|ADT74505.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia coli W]
 gi|315135541|dbj|BAJ42700.1| seryl-tRNA synthetase [Escherichia coli DH1]
 gi|315257933|gb|EFU37901.1| seryl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|315287520|gb|EFU46931.1| seryl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315291252|gb|EFU50612.1| seryl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315296139|gb|EFU55448.1| seryl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|315619205|gb|EFU99784.1| seryl-tRNA synthetase [Escherichia coli 3431]
 gi|320180610|gb|EFW55539.1| Seryl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320183168|gb|EFW58026.1| Seryl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|320192620|gb|EFW67261.1| Seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320196611|gb|EFW71234.1| Seryl-tRNA synthetase [Escherichia coli WV_060327]
 gi|320202288|gb|EFW76859.1| Seryl-tRNA synthetase [Escherichia coli EC4100B]
 gi|320637763|gb|EFX07555.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320642887|gb|EFX12088.1| seryl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320648344|gb|EFX16999.1| seryl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320654182|gb|EFX22250.1| seryl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320659806|gb|EFX27362.1| seryl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664275|gb|EFX31426.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
 gi|323157221|gb|EFZ43344.1| seryl-tRNA synthetase [Escherichia coli EPECa14]
 gi|323159518|gb|EFZ45498.1| seryl-tRNA synthetase [Escherichia coli E128010]
 gi|323165354|gb|EFZ51141.1| seryl-tRNA synthetase [Shigella sonnei 53G]
 gi|323172135|gb|EFZ57773.1| seryl-tRNA synthetase [Escherichia coli LT-68]
 gi|323175485|gb|EFZ61080.1| seryl-tRNA synthetase [Escherichia coli 1180]
 gi|323185142|gb|EFZ70507.1| seryl-tRNA synthetase [Escherichia coli 1357]
 gi|323190715|gb|EFZ75984.1| seryl-tRNA synthetase [Escherichia coli RN587/1]
 gi|323379265|gb|ADX51533.1| seryl-tRNA synthetase [Escherichia coli KO11]
 gi|323937999|gb|EGB34261.1| seryl-tRNA synthetase [Escherichia coli E1520]
 gi|323942809|gb|EGB38974.1| seryl-tRNA synthetase [Escherichia coli E482]
 gi|323947318|gb|EGB43326.1| seryl-tRNA synthetase [Escherichia coli H120]
 gi|323953397|gb|EGB49263.1| seryl-tRNA synthetase [Escherichia coli H252]
 gi|323958200|gb|EGB53909.1| seryl-tRNA synthetase [Escherichia coli H263]
 gi|323962941|gb|EGB58514.1| seryl-tRNA synthetase [Escherichia coli H489]
 gi|323967140|gb|EGB62564.1| seryl-tRNA synthetase [Escherichia coli M863]
 gi|323969605|gb|EGB64892.1| seryl-tRNA synthetase [Escherichia coli TA007]
 gi|323976720|gb|EGB71808.1| seryl-tRNA synthetase [Escherichia coli TW10509]
 gi|324009812|gb|EGB79031.1| seryl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|324012983|gb|EGB82202.1| seryl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|324116106|gb|EGC10030.1| seryl-tRNA synthetase [Escherichia coli E1167]
 gi|326338211|gb|EGD62040.1| Seryl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
 gi|326346188|gb|EGD69926.1| Seryl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|327253681|gb|EGE65310.1| seryl-tRNA synthetase [Escherichia coli STEC_7v]
 gi|330910675|gb|EGH39185.1| seryl-tRNA synthetase [Escherichia coli AA86]
 gi|331038212|gb|EGI10432.1| serine--tRNA ligase [Escherichia coli H736]
 gi|331044912|gb|EGI17039.1| serine--tRNA ligase [Escherichia coli M605]
 gi|331050190|gb|EGI22248.1| serine--tRNA ligase [Escherichia coli M718]
 gi|331055213|gb|EGI27222.1| serine--tRNA ligase [Escherichia coli TA206]
 gi|331060730|gb|EGI32694.1| serine--tRNA ligase [Escherichia coli TA143]
 gi|331065623|gb|EGI37516.1| serine--tRNA ligase [Escherichia coli TA271]
 gi|331070340|gb|EGI41705.1| serine--tRNA ligase [Escherichia coli TA280]
 gi|331075369|gb|EGI46667.1| serine--tRNA ligase [Escherichia coli H591]
 gi|331080033|gb|EGI51212.1| serine--tRNA ligase [Escherichia coli H299]
 gi|332097143|gb|EGJ02126.1| seryl-tRNA synthetase [Shigella boydii 3594-74]
 gi|332104556|gb|EGJ07902.1| seryl-tRNA synthetase [Shigella sp. D9]
 gi|332342282|gb|AEE55616.1| seryl-tRNA synthetase SerS [Escherichia coli UMNK88]
 gi|332760582|gb|EGJ90871.1| seryl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|332762948|gb|EGJ93198.1| seryl-tRNA synthetase [Shigella flexneri K-671]
 gi|332768071|gb|EGJ98257.1| seryl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333006696|gb|EGK26195.1| seryl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333021000|gb|EGK40258.1| seryl-tRNA synthetase [Shigella flexneri K-304]
          Length = 430

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|242243248|ref|ZP_04797693.1| seryl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233197|gb|EES35509.1| seryl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 435

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 177 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 233

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 234 YTIPTAEVPLTNFYRDEIIQPGVLPELFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 293

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 294 VRI-VQPEDSWNALEEMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 352

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 353 DYKEISSCSNCTDFQARRANIRF 375


>gi|88599731|gb|ABD45200.1| seryl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 14/212 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             ++  + +      G  E+S P L         G+   +  +  +  +         PT
Sbjct: 176 RALSNFMLDIHTKEFGYSEISHPILVHESAMYGVGQLPKFADDSFKTTEN----FRLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++  +   +  +LP  F      FR E     R   G+MR  +F   +  S  +
Sbjct: 232 SEVALTNLVSNMNINGCDLPLRFTACSPCFRSEAGSAGRDTRGMMRQHQFNKVELVSI-V 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----HEFIVLADTGETQV 221
           T E S     +M      I  RL L    M   +G +G   S     E  + +     ++
Sbjct: 291 TEEQSAPELERMTQIAEEILKRLELPYRVMMLCTGDMGFSASITYDIEVWIPSQNQYREI 350

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               +   F     NT +  II+   + +   
Sbjct: 351 SSCSNCKAFQARRMNTKYTTIINNVKVSKFVH 382


>gi|332091134|gb|EGI96224.1| seryl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 430

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|209964355|ref|YP_002297270.1| seryl-tRNA synthetase [Rhodospirillum centenum SW]
 gi|238065106|sp|B6ISM1|SYS_RHOCS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|209957821|gb|ACI98457.1| seryl-tRNA synthetase SerS [Rhodospirillum centenum SW]
          Length = 424

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 16/194 (8%)

Query: 24  KLMLRTGMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L    G++         G    +  GQ A     +   + +      G  E+S P L  
Sbjct: 140 ELGEALGLMDFEGAARMSGARFTVLKGQLARLERALGDFMLDLHTREFGYTEVSPPLLVR 199

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +    +G+   +  ++ R    +       PT E  +T++    I     LP+      
Sbjct: 200 DEAVFGTGQLPKFADDLFRTTTGH----WLIPTAEVTLTNLANDSIIDAEALPWRLTART 255

Query: 137 LKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
             FR E     +   G++R  +F+  +  S  L PE S+  + +M  +   +  RLGL  
Sbjct: 256 PCFRSEAGSAGKDTRGMIRQHQFMKVELVSITL-PEQSEAEHERMTKAAETVLERLGLPF 314

Query: 193 IPMRAESGPIGGDL 206
             +   +G +G   
Sbjct: 315 RTVVLCTGDMGFSA 328


>gi|148825613|ref|YP_001290366.1| seryl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229847080|ref|ZP_04467186.1| seryl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|166222729|sp|A5UB32|SYS_HAEIE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148715773|gb|ABQ97983.1| seryl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229810164|gb|EEP45884.1| seryl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|309972758|gb|ADO95959.1| Seryl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 429

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGP 108
             +   + +    + G +E  VP L +      +G+   +G+++   LA + ++     P
Sbjct: 175 RALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALQGEQPYALIP 234

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E  +T++ R  I     LP         FR E     R   G++R  +F   +     
Sbjct: 235 TAEVPVTNLVRDVIIDEAKLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI- 293

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQ 220
           + P+ S  +  ++     ++   L L    +   +G +G         E  V A     +
Sbjct: 294 VDPDKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYRE 353

Query: 221 VFCSKDFMDF 230
           +    +  DF
Sbjct: 354 ISSCSNMWDF 363


>gi|284052154|ref|ZP_06382364.1| seryl-tRNA synthetase [Arthrospira platensis str. Paraca]
 gi|291568222|dbj|BAI90494.1| seryl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 431

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G +E+  P L ++     +G+   + +E  + AD +   + 
Sbjct: 174 GAALERALVQFMLDTHTANGYLEVIPPLLVNSISLTATGQLPKFAEESFKCADDD---LW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +++R  I     LP         FR E     +   G++R  +F   +  
Sbjct: 231 LIPTSEVPVVNLYRDEILEGEQLPIYHCSFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 290

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P+ S+  + K+      I   L L    +   +G +G   +     E  + +   
Sbjct: 291 KL-VHPDTSELEHEKLVADAEGILQALKLPYRVIELCTGDLGFAAAKCYDLEVWLPSAGT 349

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     N  F +   
Sbjct: 350 YREISSCSNVKDFQARRANIRFREAKG 376


>gi|260497970|ref|ZP_05816086.1| seryl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260196478|gb|EEW94009.1| seryl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 347

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +  A++   +G+   + ++M
Sbjct: 84  SGSRFVLYRGAAARLERALINFMLDVHTLEEGYTEHITPFMVKAEVCEGTGQLPKFEEDM 143

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 144 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGKDVKGL 199

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 200 IRVHQFNKVEMVKI-TDAESSYDELEKMVKNAETILQRLELPYRVIQLCSGDLGFSAAKT 258

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 259 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 302


>gi|328675779|gb|AEB28454.1| Seryl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 426

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K   +++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D  
Sbjct: 170 KIAKLHRSLSQFMLDMHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKL--EGDFE 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 228 YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 T +  + S   +     ++  +L L    M+  +G +G         E  + + 
Sbjct: 288 LVHI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 347 NTYREISSCSWCGDF 361


>gi|298491438|ref|YP_003721615.1| histidyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233356|gb|ADI64492.1| histidyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 462

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 156/471 (33%), Gaps = 79/471 (16%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
                G   +LP  ++    +  IIR      G   +  P ++  ++    G   + G  
Sbjct: 9   FSTPSGFPEFLPSEKRLEVYLLDIIRRVFESYGFTPIETPAVERLEVLQAKG---NQGDN 65

Query: 93  MLRLAD------RNDKAMIYGPTHEEV------MTDIFRSHIKSYRN---LPFTFYQIQL 137
           ++   D      R  +    G T  E        T  F ++I  + N    PF+ YQ+ +
Sbjct: 66  IIYGIDPILPPNRQAEKDKSGETALEARALKFDQTVPFAAYIARHLNELTFPFSRYQMDM 125

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN-KMFVSYLRIFHRLGLKSIPMR 196
            FR E R + G  R R+F   D              Y+ +M      IF  + +    +R
Sbjct: 126 VFRGE-RAKDG--RFRQFRQCDIDVVARGKLSLL--YDAQMPAIITEIFEAINIGDFAIR 180

Query: 197 AESGPI--GGDLSHEFIV------------LADTGE----------------TQVFCSKD 226
             +  I  G   S E               L   GE                T+      
Sbjct: 181 INNRKILTGFFQSVEVPENQIKACIAIIDNLEKIGEAKVKSELEKEGISSEQTEKIIEFI 240

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            +D  +       + +       EQ+       + V N      + + +      I  G 
Sbjct: 241 KIDGSVDDVLDKLNHLAQSFPEAEQFNLGVTELATVINGVRDLGVADKRFCIDLSIARGL 300

Query: 287 IFYFGTKYS------LPMSATFKGAD---------GKDHYVQMGSYGIGAMRVVAAVIES 331
            +Y GT Y         + +   G           G+       S G+   R+++ ++  
Sbjct: 301 NYYTGTVYETTLIGHEALGSICSGGRYEELVGMFLGEKMPGVGISIGL--TRLISRLL-- 356

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                GI+   S  P ++ ++N+    +       K+  +L + G +V  +     +G Q
Sbjct: 357 ---KAGILNTLSATPTQVVVVNM---QEDLIAVYLKVSQQLRQAGINVVTNFEKRPLGKQ 410

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  AD  G    VI+G+   +  K  +K+  +G + +++L ++      R 
Sbjct: 411 FQAADKQGIQFCVIIGADEAAAQKSSLKNLKSGEQVEVALADLAEEIKRRL 461


>gi|254369671|ref|ZP_04985681.1| serine-tRNA ligase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122630|gb|EDO66759.1| serine-tRNA ligase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 426

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    ++  + +    + G  E+ VP L + D    +G+   +   + +L    D  
Sbjct: 170 KIAKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAANLFKL--EGDFE 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 228 YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 T +  + S   +     ++  +L L    M+  +G +G         E  + + 
Sbjct: 288 LVHI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 347 NTYREISSCSWCGDF 361


>gi|33152253|ref|NP_873606.1| seryl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|46577207|sp|Q7VM65|SYS_HAEDU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33148475|gb|AAP95995.1| seryl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 435

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 17/202 (8%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----D 98
              +    +   + +    + G +E++VP L + D    +G+   +G+++         D
Sbjct: 169 KIARLHRALAQFMLDLHSEQHGYMEVNVPLLVNHDTLYGTGQLPKFGEDLFHTQPLTGQD 228

Query: 99  RND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRS 152
            N+  +     PT E  +T++ R  I    +LP         FR E     R   G++R 
Sbjct: 229 PNEVQRPYGLIPTAEVPLTNLVRDEIVDEDSLPIKLVAHTPCFRAEAGSYGRDTRGLIRM 288

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---- 208
            +F   +       PE S  +  ++     +I   L L    +   +G +G   +     
Sbjct: 289 HQFEKVELVQIVA-PEKSMEALEELTGQAEKILQLLHLPYRKVLLCTGDMGFGSAKTYDL 347

Query: 209 EFIVLADTGETQVFCSKDFMDF 230
           E  + A     ++    +  DF
Sbjct: 348 EVWLPAQNTYREISSCSNMWDF 369


>gi|94985224|ref|YP_604588.1| histidyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|123079905|sp|Q1IZB5|SYH_DEIGD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|94555505|gb|ABF45419.1| histidyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 431

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 134/448 (29%), Gaps = 56/448 (12%)

Query: 31  MIHQHSKGIYSWLPLG---------QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           M  Q  KG    LP G           A   V    R    R GA  ++ P  + A+L  
Sbjct: 1   MALQRPKGTQDHLPDGSPKLSRDVQASAFAYVQDTARRVLERAGAQFIATPLFEEAELVR 60

Query: 82  E--SGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
               G  D   KEM  +    D    +  P     +   +  +       P   +     
Sbjct: 61  RGVGGSTDIVRKEMFTVYYFGDHGGYVLRPEGTAGIVRAYLQNGLKQLPAPLKLWTHGPM 120

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           FR E        R R+F   D  +     P     +   M+     +   LGL  + ++ 
Sbjct: 121 FRAE---NVQKGRLRQFHQVDYEALGSADPLVDAEAIWLMWE----VVRELGLTGVRVKL 173

Query: 198 ESGPIGGD------------------LSHEFIVLADTGETQVFCSKDFMDFP-IPSENTD 238
            S     D                  LS +          ++  SK   D   I      
Sbjct: 174 GSIGDPADREAYNAYLRDCFTPHAARLSDDSRDRLTRNPMRILDSKSTGDQALIGELQVK 233

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSL 296
                   +    + A  A     +     D          R    E+ H    G K +L
Sbjct: 234 PMLDFLGEAASSHFAAVQAYLRAWNVPFDIDPAIVRGLDYYRRTAWELHHQGV-GAKSAL 292

Query: 297 PMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                + G     G      +G +  G  R++ A+     + +G+ +P+   P    L+ 
Sbjct: 293 GGGGRYDGLSTQLGGPEVPGIG-WAFGIERLLLAL-----EAEGVTFPEESGP----LLF 342

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           + A D+        +     +V   V +     +  + F  AD        ++GS     
Sbjct: 343 LAALDEEHVARAAGLALEGRRV-ARVEFAYRALKPANAFKEADRRRARYAGLLGSDEAER 401

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             + IKH  +G ++++ L  +  + + R
Sbjct: 402 GVLTIKHLASGEQQEVPLAALNTFLAER 429


>gi|261493283|ref|ZP_05989810.1| histidine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496473|ref|ZP_05992853.1| histidine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307676|gb|EEY08999.1| histidine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311133|gb|EEY12309.1| histidine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 425

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 145/428 (33%), Gaps = 47/428 (10%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        V   +R      G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PSESPLWQWVEQKVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P                Y N     + +   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIERGWIYNNE-QRLWYMGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-------SIPMRAESGPIGGDLSHEF--I 211
            F    PE        + +   R++  LG+        +     E+         +F   
Sbjct: 131 VFGIANPEIDAE----LIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLEN 186

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A   E +           + ++N    ++++    +  +    +         L D++
Sbjct: 187 HTALMNEEEKERLVKNPLRILDTKNEALQNVLNDAPKLLDYLDDDSREHFTQLCALLDAM 246

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK---------------DHYVQMGS 316
                V+ + +  G  +Y  T +    SA   G+ G                 H  Q   
Sbjct: 247 GIRYEVNPKLV-RGLDYYNKTVFEWVTSALALGSQGTVCGGGRYDGLVEQLGGHATQGVG 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           + +G  R+V  V E +   K I  P +V    + ++       +      E+I + L  V
Sbjct: 306 FAMGLERLVLLVQEVN---KEIDLPKTV---DVYIVFSGEGATLNAFQLAEQIRSELPHV 359

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEV 434
           G        G +   QF  AD +   + +++G   V++ +V IK  R    +  ++  E+
Sbjct: 360 GVMTHC--SGGKFQKQFKRADKVEAQIALVIGESEVAEKQVVIKDLRSGAEQITIAQSEL 417

Query: 435 INYASHRF 442
           I   S RF
Sbjct: 418 IAELSKRF 425


>gi|225440069|ref|XP_002277086.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 554

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 146/437 (33%), Gaps = 61/437 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEML 94
            +G   + P   +  + +    RE     G  E+  P L+S  L+  ++G  +    ++ 
Sbjct: 140 PRGTRDFPPEDMRLRNWLFNHFREVSRSFGFEEVDFPVLESEALFIRKAG--EEIRDQLY 197

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR ++ +   P     +  +     KS  +LP  ++ +   +R E R   G  R RE
Sbjct: 198 CFEDRGNRRVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYE-RMTRG--RRRE 253

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGP----------I 202
               +     + PE    +  ++  S +  F R+G+    +  +  S            I
Sbjct: 254 HYQWNMDIIGV-PEVMAEA--ELISSIVTFFKRVGITASDVGFKVSSRKVLQEVLRCYSI 310

Query: 203 GGDLSHEFIVLADTGE----TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
             +L  +  V+ D  E     ++      +     +       +   +    +     A 
Sbjct: 311 PENLFGKVCVIIDKMEKIPIDEITKELKSLGMSEEAIKDLLQVLSIKSLTKLEEILGAAG 370

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +    ++LF    +         +   +   G  Y   +       +GK   +     G
Sbjct: 371 EAVADLKQLFSLAEKFGYSEWIQFDASVVR--GLAYYTGIVFEGFDREGKLRAI---CGG 425

Query: 319 IGAMRVVA----------------AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               R+++                AVI      KG++    ++  ++  I + A D   +
Sbjct: 426 GRYDRLLSTFGGDDVPACGFGFGDAVIIELLKEKGLL--PELS-LQVENI-VCALDHYLQ 481

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFA-----VADLLGFPLQVIVGSKFVSDSKVE 417
            A   +  RL + G  V      + +   F       A  L     ++VG+       V 
Sbjct: 482 GAAAAVATRLREKGQSVDLVLESKPLKWVFKRAARTNAQRL-----ILVGNSEWQRGMVS 536

Query: 418 IKHRLTGIREDMSLEEV 434
           +K   +G + ++ L+E+
Sbjct: 537 VKILSSGEQYEIKLDEL 553


>gi|218889914|ref|YP_002438778.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|226737077|sp|B7UWI9|SYH_PSEA8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218770137|emb|CAW25899.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 429

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 134/445 (30%), Gaps = 56/445 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G+   LP    A   +        +  G  E+ +P L+  +L+        D   K
Sbjct: 6   QAIRGMNDILPEQTPAWRYLERTFAGLLDGYGYSEIRLPILEFTELFARGIGEGTDVVDK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H  S        +     FR E +P+ G  R
Sbjct: 66  EMYTFLDRNGESLTMRPEGTAGCVRAVLEHGLSGGGQVQKLWYTGPMFRYE-KPQKG--R 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F+L           + +   R++ +LG+      A +  +    S E  
Sbjct: 123 YRQFHQIGVEVFNLPGPDIDAE---LIILTWRLWQKLGMAD----AVTLQLNTLGSSEAR 175

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                        +              + +  L+S VE   A       +H+    +S+
Sbjct: 176 ARYREALVAYLQERFEQLDEDSQRRMTTNPLRILDSKVESTQALLVGAPTLHDYLDEESI 235

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSA-------TFKGADGKD--------------- 309
              + + AR   VG  +    K    +               G                 
Sbjct: 236 AHFEGLKARLDAVGLRYEINQKLVRGLDYYCRTAFEWVTDKLGAQGTVCGGGRYDGLVSQ 295

Query: 310 ---HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQVCRDAC 365
                     + +G  R+V  ++E+       + P  +  P  + +       +    A 
Sbjct: 296 FGGKPTPGVGFAMGVERLVL-LLETLG-----VIPAELNRPADLYVCAFG---EPAELAA 346

Query: 366 EKIYARLSKV--GCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK- 419
             +  +L     G  +         G  +  F  AD  G    +I+G   V++  V  K 
Sbjct: 347 LTLAEQLRSAIPGIRLLV---NAGAGSFKSQFKKADKSGARFALILGEDEVANRVVGFKP 403

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R  G ++ ++ + +  + +     
Sbjct: 404 LRDEGEQQSIAWDALPEHLAACLEQ 428


>gi|325912101|ref|ZP_08174499.1| histidine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|325476051|gb|EGC79219.1| histidine--tRNA ligase [Lactobacillus iners UPII 143-D]
          Length = 428

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 137/437 (31%), Gaps = 56/437 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP      D V  I +    +    E+  P  ++ +++  S     D   K
Sbjct: 4   QKPKGTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF--TFYQIQLKFRDELRPRFGV 149
           EM    D+ D+ +   P     +   +  +       P     + I   FR E RP+ G 
Sbjct: 64  EMYDFMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R REF      SF      +        V    +   LG+K   +   S          
Sbjct: 122 -RQREFHQIGVESFGSDNALADVET---IVLAHDLLSTLGIKKYELHINSLGNEAVRTAY 177

Query: 200 --------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    PI   LS +      T   ++  SKD  D    S      D +  +   + 
Sbjct: 178 RQALVDYFTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLD-DESKKN 236

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARG------------IEVGHIFYFGTKYSLPMS 299
           +       S++  + + D           G             +       G +Y+    
Sbjct: 237 FEFIIKTLSELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNH--- 293

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +  DG         +GIG  R++  +   +        P+ +    I        ++
Sbjct: 294 -LVEEFDGPKTPAV--GFGIGEERLMLVLKAQN--------PELLTDSNIDFYITNIGEE 342

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E I   L   G  + +D   +++ +QF  AD       + +G + + ++ + IK
Sbjct: 343 TITKTVE-IARELRNQGLKIQYDVEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIK 401

Query: 420 HRLTGIREDMSLEEVIN 436
               G     +++E+ N
Sbjct: 402 RLSDGKSYAFNMDEIAN 418


>gi|320175334|gb|EFW50440.1| Seryl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
          Length = 430

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|251811371|ref|ZP_04825844.1| seryl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|293367573|ref|ZP_06614226.1| serine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|251805120|gb|EES57777.1| seryl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|291318286|gb|EFE58679.1| serine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 435

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 177 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 233

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 234 YTIPTAEVPLTNFYRDEIIQPGVLPELFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 293

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S ++  +M  +   I   LGL    +   +G IG   S     E  + +  
Sbjct: 294 VRI-VQPEDSWNALEEMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 352

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 353 DYKEISSCSNCTDFQARRANIRF 375


>gi|21675063|ref|NP_663128.1| glycyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|59798593|sp|Q8KAB1|SYG_CHLTE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|21648301|gb|AAM73470.1| glycyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 470

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/472 (13%), Positives = 143/472 (30%), Gaps = 63/472 (13%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I   S         + + PLG +   N+  +      R     + +    + +
Sbjct: 7   LAKRRGFIFPSSEIYGGLSSCFDYGPLGSEMKKNIKDLWWNAMTRRHQNIVGIDASIMMN 66

Query: 77  ADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVM----------TDIFRSHIK 123
             +W  SG   S+   M+       R     +     E++             +      
Sbjct: 67  PTVWEASGHVASFNDPMIDDKTTKRRYRADHLIENHIEKLHRDGKEAEAAAIKVAYEAAG 126

Query: 124 SYRNLPFTFYQI----QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS------KHS 173
              +   T Y I     +K  D     +     R+F +    +     + +        +
Sbjct: 127 GTEDPNRTLYNIIIEAGIKAPDTGSADWT--EVRQFNLMFQCNMGAVADSAGVVYLRPET 184

Query: 174 YNKMFVSYLRIFHR------LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +FV++  +          G+  I     +  + G+     +V  +  E Q F     
Sbjct: 185 AQGIFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFIFR-MVEFEQMEMQYFVKPGT 243

Query: 228 MDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                 +   + F        + ++    Y      H   L   +          IE  H
Sbjct: 244 QLEAFEAWREERFRWYSETLGMSKEKLHWYKHDKLAHYADLAYDIKFEFPFGIEEIEGIH 303

Query: 287 IFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGK-- 336
                T + L     + G           + +   +     G  R   A++  ++     
Sbjct: 304 SR---TDFDLSQHQKYSGKSMEYIDQTTNERYIPYVVETSSGCDRTFLALLSDAYQEDVV 360

Query: 337 ------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                  +     VAP K +++ +    ++  +   ++   LS+    V +DD    IG 
Sbjct: 361 DGEPRVMLKLAPKVAPVKAAVLPLMKKGEM-GEKAAQLCRDLSES-FMVQYDD-AASIGK 417

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++   D +G P    V    + +  + +++R T  +E +++ +   + + + 
Sbjct: 418 RYRRQDEIGTPFCFTVDHDTLENGTITVRYRDTAAQERINMSKAAEFLATKL 469


>gi|225548175|ref|ZP_03769460.1| hypothetical protein RUMHYD_00154 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040614|gb|EEG50860.1| hypothetical protein RUMHYD_00154 [Blautia hydrogenotrophica DSM
           10507]
          Length = 464

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 153/448 (34%), Gaps = 62/448 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFI----QESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGP----THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           +   + +++          + E+ +         S   +     +  +      +  F  
Sbjct: 88  MDCKECHERFRADKLIEDYSAEKGIELEGSVDAWSQEQMMDFIKEHNVPCPTCGKHNFTD 147

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPIG 203
           +R  +F +    +F    E +K++      +   IF  +  K++       +    G IG
Sbjct: 148 IR--QFNLM-FKTFQGVTEDAKNTVYLRPETAQGIF--VNFKNVQRTSRKKLPFGIGQIG 202

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
               +E      T  T+ F   +   F  P  + ++        +    +         +
Sbjct: 203 KSFRNEITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKKFCLDWLSSLGLKEDEVRY 262

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD------- 306
            +   + L    + +    +V  +F FG          T Y L       G D       
Sbjct: 263 RDHEKEELSFYSKATT---DVEFLFPFGWGELWGIADRTDYDLTQHQNVSGEDLTYFDDE 319

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGK-----------GIIWPDSVAPFKISLINI 354
             + +   +    +GA R+V A + S++D +            + +   +AP KI ++ +
Sbjct: 320 KKQRYIPYVIEPSLGADRMVLAFLCSAYDEEVLDEEKNDVRTVLHFHPVLAPVKIGVLPL 379

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   KIY +LSK   +  +DD G  IG ++   D +G P  V        D 
Sbjct: 380 SKK---LNEGALKIYEQLSKK-YNCEYDDRGN-IGKRYRRQDEIGTPFCVTYDFDSEEDG 434

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V ++ R T  +  + +EE+  Y + +F
Sbjct: 435 SVTVRDRDTMEQVRVKIEELDAYFADKF 462


>gi|15616922|ref|NP_240135.1| seryl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681676|ref|YP_002468062.1| seryl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682231|ref|YP_002468615.1| seryl-tRNA synthetase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471367|ref|ZP_05635366.1| seryl-tRNA synthetase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11134954|sp|P57398|SYS_BUCAI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783012|sp|B8D9A3|SYS_BUCA5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783013|sp|B8D7K5|SYS_BUCAT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|25293163|pir||E84966 serine-tRNA ligase (EC 6.1.1.11) [imported] - Buchnera sp.  (strain
           APS)
 gi|10038986|dbj|BAB13021.1| seryl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219621964|gb|ACL30120.1| seryl-tRNA synthetase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624519|gb|ACL30674.1| seryl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311086051|gb|ADP66133.1| seryl-tRNA synthetase [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086624|gb|ADP66705.1| seryl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087207|gb|ADP67287.1| seryl-tRNA synthetase [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 427

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 17/256 (6%)

Query: 12  QENPRDAEIASH-KLMLRTGMIHQHSK----GIYSWLPLGQKAL--DNVNAIIREEQN-R 63
           Q+   D EI  H +L  +   +   S     G    +  G+ AL    ++  + +    +
Sbjct: 128 QKKKYDFEIQDHIELGKKFNELDWKSSAQMSGSRFVIMKGKIALLHRALSQFMLDLHTLK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G IE  VP L  ++    +G+   +  ++  +   + K  I  PT E  +T++    I 
Sbjct: 188 HGYIESYVPYLVHSEALYGTGQLPKFSDDLFHINLTDKKKYILIPTGEVPLTNLVYDQII 247

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             ++LP         FR E     R   G++R  +F   +     + PE S  +  K+  
Sbjct: 248 DEKDLPIMLTAHTPCFRSEASSYGRDTKGLIRLHQFDKVELVQI-VKPEKSYEALEKLTN 306

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSE 235
              ++   L L    M   +G  G         E    ++    +V    +  DF     
Sbjct: 307 HAEKVLQLLNLPYRKMLLCTGDTGFAAVKTYDLEVWFPSEKKYREVSSCSNMSDFQARRI 366

Query: 236 NTDFDDIISLNSIVEQ 251
              +       +    
Sbjct: 367 KARYRKKSEQKNFFVH 382


>gi|254566971|ref|XP_002490596.1| Cytosolic seryl-tRNA synthetase, class II aminoacyl-tRNA synthetase
           [Pichia pastoris GS115]
 gi|238030392|emb|CAY68315.1| Cytosolic seryl-tRNA synthetase, class II aminoacyl-tRNA synthetase
           [Pichia pastoris GS115]
 gi|328350984|emb|CCA37384.1| seryl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 460

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 78/209 (37%), Gaps = 14/209 (6%)

Query: 18  AEIASHKLMLRTGMIHQHSKGI-------YSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           A+++ H+++LR        +G+       Y     G      +         + G + + 
Sbjct: 152 AKLSHHEVLLRLDGYDPE-RGVKIVGHRGYFLRNYGVFLNQALINYGLSYLAQKGYLPLQ 210

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LP 129
            P + + D+  ++ +   + +E+ ++ D +D+  +   + + +         +  +  LP
Sbjct: 211 APVMMNKDVMAKTAQLSQFDEELYKVTDGDDEKYLIATSEQPISAYHSNEWFEKPQEQLP 270

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             +      FR E     +  +G+ R   F   +       P+ S   +++M  +    +
Sbjct: 271 IRYAGFSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFCLTEPDKSWEEFDRMIGAAEGFY 329

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             LGL    +   SG +    + ++ + A
Sbjct: 330 QSLGLPYRVVGIVSGELNNAAAKKYDLEA 358


>gi|66823277|ref|XP_644993.1| seryl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|75009955|sp|Q7KWQ2|SYSC_DICDI RecName: Full=Seryl-tRNA synthetase, cytoplasmic; AltName:
           Full=Serine--tRNA ligase; Short=SerRS; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase
 gi|60473019|gb|EAL70967.1| seryl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 451

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 6/176 (3%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y    +G      +         + G++ +  P   + D+  ++ + + +  E+ ++  
Sbjct: 167 CYFLKGIGVLLNQAIINFALMHMTKRGSVPLQTPFFMNKDVMAKTAQLEQFDDELYKVTG 226

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N++      T E+ ++   +      ++LP  +      FR E     R  +G+ R  +
Sbjct: 227 DNEEKY-LIATSEQPISAFHQDEWIEEKDLPKKYVGYSTCFRKEAGSHGRDTWGIFRVHQ 285

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           F   +       PE S     +M  +  + +  LG+    +   SG +    S ++
Sbjct: 286 FEKIE-QFCITEPEKSWDMMEEMINNSEQFYQELGIPYRVVNIVSGALNNAASKKY 340


>gi|255513918|gb|EET90183.1| glycyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 500

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 119/338 (35%), Gaps = 17/338 (5%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F+   + Y   LP    Q    FR+E+ PR  ++R REF   +   F
Sbjct: 171 YLRPETAQGIFVNFKYLYRVYGMKLPGGIGQAGKVFRNEISPRQILIRLREFSQMELELF 230

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
              PE    S N + V +  +  ++   S   +         +S    V       ++  
Sbjct: 231 -FDPERDSDSVNGIAVDWSSLETKINFISEKDQKGGEAKVSRMSIAECVSEGYIPNRLMG 289

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                +     E    +D      +++     Y+  +      + +S  E    + R   
Sbjct: 290 YAIAEEVVFLKELGFKEDEFRFRQLLKDELPHYSRGNVDLEVSIGNSWEEAAGNAYR--- 346

Query: 284 VGHIFYFGTKYSLP-MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----- 337
               F   +  S+     +    D K     +    +G  R+   ++ +S    G     
Sbjct: 347 --TDFDLKSHQSMSNQDMSVVDMD-KKVLPHVVEVSLGLDRLFWGLLHNSLYRDGKRDWD 403

Query: 338 -IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++  D +AP+K +L  +   D        +I   L   G   ++   G  IG ++A AD
Sbjct: 404 VLLLADDIAPYKYALFPL-QKDDKIIAKSVEIGNLLKSKGIYPYYSASG-SIGKRYAKAD 461

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +G P+ + V    + +  V I+  L G +  +  E++
Sbjct: 462 EVGIPMAITVDYDTLENGTVTIRKALDGSQTRVKFEDI 499


>gi|189459794|ref|ZP_03008579.1| hypothetical protein BACCOP_00423 [Bacteroides coprocola DSM 17136]
 gi|189433494|gb|EDV02479.1| hypothetical protein BACCOP_00423 [Bacteroides coprocola DSM 17136]
          Length = 424

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 15/203 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E   
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGQGARLQRALINFFLDEARA 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PT+ +A     +G+      +M      N   +   PT E  +T+I+R  I 
Sbjct: 192 AGYEEIMPPTVVNAASGYGTGQLPDKEGQMY---HCNLDDLYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPI 202
               +  +L L    +R   G +
Sbjct: 308 HVEGLLQKLELPYRILRLCGGDM 330


>gi|145634635|ref|ZP_01790344.1| histidyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268180|gb|EDK08175.1| histidyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 423

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 140/428 (32%), Gaps = 49/428 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQYVTLQLNSIGSLEARANYRSALVGFLKN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+ ++  +  E  V      +D   P       D            +             
Sbjct: 187 HQDLMSDEEKERLVKNPLRILDTKNPELQKIL-DNAPELLDYLDDESREHFEQLCALLDA 245

Query: 268 FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
                E      RG++     +F       G + ++     + G       H      + 
Sbjct: 246 VGIQYEINPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFA 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKV 375
           +G  R+V  V E +        P   A   + +  +   +    V  +  EK+ + L   
Sbjct: 306 MGLERLVLLVQEVN-----PNVPVKSA---VDIYVVYQGEGATLVAFELAEKVRSELP-- 355

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEV 434
             +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  V
Sbjct: 356 HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGADQQTLDLVNV 415

Query: 435 INYASHRF 442
           I+Y   +F
Sbjct: 416 IDYIQTQF 423


>gi|22538242|ref|NP_689093.1| histidyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|25012099|ref|NP_736494.1| histidyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76798538|ref|ZP_00780771.1| histidyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|54039672|sp|P67486|SYH_STRA5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|54042035|sp|P67485|SYH_STRA3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|22535155|gb|AAN00966.1|AE014287_6 histidyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|24413643|emb|CAD47720.1| histidyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76586102|gb|EAO62627.1| histidyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
          Length = 426

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 129/426 (30%), Gaps = 41/426 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        V  +IR    +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILPGESAKWQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFHDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R REF       F      +      M      +F  LG+K++ +   S  +G   
Sbjct: 120 AG--RLREFHQVGVECFGSNNPATDVETIAMG---HHLFEDLGIKNVKLHLNS--LGNPE 172

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           S +    A          +   D            + S     +       +  D  +E 
Sbjct: 173 SRQAYRQALIDYLTPIREQLSKDSQRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDES 232

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
               FD++            +      G  Y       F     D +      G Y    
Sbjct: 233 SQAHFDAVCHMLDALNIPYIIDTNMVRGLDYYNHTIFEFITEIEDNELTICAGGRYDGLV 292

Query: 322 MRVVAA-------------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                               +    D +GI  P       + +  + +       A   +
Sbjct: 293 S-YFGGPETPAFGFGLGLERLLLILDKQGISLPIENT-IDLYIAVLGS---EANLAALDL 347

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              +   G  V  D +G +I +QF  AD     + + +GS  V   +V +K+  T     
Sbjct: 348 AQSIRHQGFKVERDYLGRKIKAQFKSADTFNAKVIMTLGSSEVDSKEVGLKNNQTRQEVK 407

Query: 429 MSLEEV 434
           +S E +
Sbjct: 408 VSFENI 413


>gi|118594714|ref|ZP_01552061.1| seryl-tRNA synthetase [Methylophilales bacterium HTCC2181]
 gi|118440492|gb|EAV47119.1| seryl-tRNA synthetase [Methylophilales bacterium HTCC2181]
          Length = 426

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 76/246 (30%), Gaps = 12/246 (4%)

Query: 16  RDAEIASHKLMLRTGM-IHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPT 73
           +D     H L L   M I                    +   + +         E   P 
Sbjct: 137 KDHVDLGHPLGLDFDMGIKLSGARFAVIRSNLALLHRALGQFMLDTHTREHNYEECYTPY 196

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           L + +  + +G+   + +++        +  +   PT E  +T+  R  I     LP   
Sbjct: 197 LVNNESLLGTGQLPKFEEDLFNTKKGGSEDNLFLIPTGEVPLTNFVRDVIVDKNELPIRL 256

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +   FR E     +   G++R  +F   +       PE S  + ++M      I  +L
Sbjct: 257 TALTPCFRSEAGSYGKDTRGMIRQHQFDKVEMVQI-AHPESSYEALDEMLGHAESIMQKL 315

Query: 189 GLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            L    +   +G +G   +     E  V +     ++    +  DF        F D   
Sbjct: 316 ALPYRVISLCAGDMGFGATKTFDIEVWVPSQNCYREISSVSNCEDFQARRLKARFRDNDK 375

Query: 245 LNSIVE 250
            N  + 
Sbjct: 376 KNKFLH 381


>gi|27379859|ref|NP_771388.1| seryl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|46577251|sp|Q89L00|SYS_BRAJA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|27353012|dbj|BAC50013.1| seryl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 443

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 96/315 (30%), Gaps = 75/315 (23%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN-----DKAM 104
             +   + +      G  E++ P L   ++   +G+   +  +             D   
Sbjct: 176 RAIGQFMLDLHTTEHGYTEINPPLLVRNEVMFGTGQLPKFEDDQFWAIKGELLASPDHER 235

Query: 105 I------YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +        PT E  +T++ R  I   + LP     +   FR E     R   G++R  +
Sbjct: 236 LKTERLGLIPTAEVSLTNLARESILDEKQLPMRLTALTPCFRAEAGAAGRDTRGMIRQHQ 295

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +  S   TPE SK    +M     ++  +L L    M   +G +G      + +  
Sbjct: 296 FTKVELVSI-TTPEASKDELERMLSCAEQVLQKLDLHYRVMTLCAGDMGFSSQKTYDIE- 353

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                        +  P   +   F +I S +                            
Sbjct: 354 -------------VWMPGQGDGGMFREISSCSV--------------------------- 373

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSH 333
                           G   +  M A  +G DGK  +V  +   G    R + AV+E+  
Sbjct: 374 ---------------CGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRALIAVMETYQ 418

Query: 334 DGKG-IIWPDSVAPF 347
              G I  P  + P+
Sbjct: 419 QEDGSIAVPSVLQPY 433


>gi|224418974|ref|ZP_03656980.1| seryl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 442

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 20/229 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            ++ +  K    +   + +   + G  E+  P + ++ +   +G+   +  ++ +++D  
Sbjct: 177 VFMGMAAKLERALINYMLDFNTQRGFSEVGTPVIVNSQILFGTGQLPKFENDLFKISDFE 236

Query: 101 DK-----------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
           ++            +   PT E  +T+++ + I    +LP         FR E     R 
Sbjct: 237 EEELDSKEAKKGHELYLIPTAEVTLTNLYNNEILKEEDLPLMMTAYTPCFRKEAGSAGRD 296

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +  +   TP+ S     +M      +   LGL    ++  SG +G  
Sbjct: 297 TRGIIRQHQFDKVELVAI-TTPQDSDIMQERMVACASDLLTSLGLPHRLVQLCSGDLGFS 355

Query: 206 LSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            S+    E  +       ++    +  DF        + D    N +V 
Sbjct: 356 ASNTIDIEVWLPGQNCYREISSISNTRDFQARRAKIRYKDSNKKNLLVH 404


>gi|1333826|emb|CAA78919.1| histidine--tRNA ligase [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 407

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 132/414 (31%), Gaps = 49/414 (11%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 1   WQYVEGVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 60

Query: 108 PTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           P   E    + RS++++         P   Y I   FR E RP+ G  R REF       
Sbjct: 61  P---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQAG--RLREFHQIGVEC 114

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGG 204
           F      +      M  +Y  +F RLG+K + +   S                   P+  
Sbjct: 115 FGSANPATDVETIAM--AYH-LFERLGIKGVTLHLNSLGNAASRAAYRQALIDYLSPMRD 171

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            LS +     D    +V  SK+  D    +      D     S                 
Sbjct: 172 TLSKDSQRRLDENPLRVLDSKEKEDKIAVANAPSILDYQDEESQAHFDAVRSML------ 225

Query: 265 EKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIG 320
            +             RG++     IF F T+          G   DG   Y    +    
Sbjct: 226 -EALAIPYVIDTNMVRGLDYYNHTIFEFITEVDQSELTICAGGRYDGLVEYFGGPATPGF 284

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
              +    +    D +G+  P       + +  + A   V   A   +   + + G  V 
Sbjct: 285 GFGLGLERLLLILDKQGVELPVEEG-LDVYIAVLGADANV---AALALTQAIRRQGFTVE 340

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            D +G +I +QF  AD     + + +G   +   +  +KH  T     +S +++
Sbjct: 341 RDYLGRKIKAQFKSADTFKAKVVITLGESEIKAGQAVLKHNQTRQEMTVSFDQI 394


>gi|166077770|gb|ABY80979.1| glutamyl-prolyl tRNA synthetase [Caspiomysis knipowitschi]
          Length = 137

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           S R I+     + G  +S     TF+      K  +V   S+G+   R +  ++    D 
Sbjct: 22  SGRAIQGATSHHLGQNFSKMFDITFEDPKVPDKKQFVFQNSWGLT-TRTIGVMVMVHGDD 80

Query: 336 KGIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWD 382
           KG++ P  VA     ++ +               DA +++   L         D
Sbjct: 81  KGLVLPPRVAAVHCIIMPVGITAKTTDDERSALVDAAKQLNDELVAGDIRAECD 134


>gi|154496106|ref|ZP_02034802.1| hypothetical protein BACCAP_00390 [Bacteroides capillosus ATCC
           29799]
 gi|150274661|gb|EDN01725.1| hypothetical protein BACCAP_00390 [Bacteroides capillosus ATCC
           29799]
          Length = 465

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 149/474 (31%), Gaps = 82/474 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   D + AI+RE     G   +  P ++++++ +  G  ++  K++ R 
Sbjct: 10  SGFMELLPADQVLFDRMVAILRESYALYGFTPLDTPAIEASEVLLAKGGGET-EKQIYRF 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             + D  +         +      H  +  + PF  +QI   +R E R + G  R REF 
Sbjct: 69  Q-KGDSDLSLRFDLTVPLAKYVALHY-NELSFPFRRFQIGKVYRGE-RAQRG--RFREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG---------------- 200
             D            +      + Y R F  LGL+   +R  +                 
Sbjct: 124 QADIDVIGDGKLDIINEAEIPSIIY-RAFTALGLRRFKIRVNNRMVLNGLFALLGLEQQA 182

Query: 201 -----------PIGGD-----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                       IG D     L  +F V ADT +T +                  +++  
Sbjct: 183 GDVMRTIDKLEKIGPDKVKAILVDDFAVSADTADTLLSLLSAADPMAALEPFKGKNELFD 242

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM----SA 300
           L          Y A            +P +  +    I  G  +Y GT Y   M      
Sbjct: 243 LGVEELNTVVKYMAAF---------GVPADHFMVDLTIARGLDYYTGTVYETVMLDHPEV 293

Query: 301 TFKGADGK-----DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               + G+     ++Y      G+G    +  +     + K +   ++ AP  + ++ + 
Sbjct: 294 GSICSGGRYDNLAEYYTDKQLPGVGISIGLTRLFYVLQEQKMLNASNA-APADVLILPMT 352

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                           L   G         ++   +   A+ L  P    +G   V    
Sbjct: 353 EDLSAAISFA----TALRAQGVRAQLHCEQKKFKQKLNYANKLSIPFAAFLGEDEVKAGT 408

Query: 416 VEIKHRLTGI-----------------REDMSLEEVINYASHRFS---NNRPVL 449
           V +K+ L G                  +  + + E ++Y  +  S   ++RP+L
Sbjct: 409 VTVKNLLMGDDFTEEEKADMESQGFFKQVTLPVAEAVSYVKNCLSDPKDDRPIL 462


>gi|82617275|emb|CAI64180.1| glycyl-tRNA synthetase [uncultured archaeon]
          Length = 594

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDG--------KGIIWPDSVAPFKISLINIKAHD 358
           G+     +     G  R++ A +E S             +  P  VAP +++++ +   +
Sbjct: 440 GERVIPHVIEPSFGIDRIIYAALEHSFSEELVAGVTRNVLHLPAEVAPVQVAVLPLLTRE 499

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           ++       I   L + G  V +DD G  IG ++   D +G P  V +  + + D  V I
Sbjct: 500 ELIAP-ALAIVGTLRENGVFVSYDDSG-TIGRRYRRNDEIGTPFSVTIDYETLDDDTVTI 557

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + R +  +  M + E+         +
Sbjct: 558 RDRDSMAQIRMPIGELAETLRAMIRH 583



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 66/213 (30%), Gaps = 64/213 (30%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML- 94
            G Y + PLG      +  I R+      G  E+  PT+  A ++  SG    +   M+ 
Sbjct: 37  AGFYDYGPLGAMLKRRIEDIWRKMYVIEEGFYEIETPTIGIAAIFDASGHTRGFSDPMVV 96

Query: 95  ------------------------------RLADRNDKAMIYGPTHEEV-----MTDIFR 119
                                         RL D N                     +F+
Sbjct: 97  CSKCDHSFRADHLIEGIVETPDALPASEIKRLIDENGIKCPQCGGSGTFGGVSSFNLMFK 156

Query: 120 SHI--------------------------KSYRN-LPFTFYQIQLKFRDELRPRFGVMRS 152
           + I                          + YR  LPF   QI   +R+E+ PR GV+R 
Sbjct: 157 TTIGPGAERVGYLRPETAQGMFVDFEHLFRFYREKLPFGVTQIGKAYRNEISPRQGVIRL 216

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           REF   +A  F    E +   ++ +    LR +
Sbjct: 217 REFTQAEAEIFINPTEKNHPKFSMIEDMVLRYY 249


>gi|303235352|ref|ZP_07321969.1| serine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302493473|gb|EFL53262.1| serine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 421

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 11/215 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    +   + +   ++ G  EM+ P L S      +G+   + ++M          
Sbjct: 168 KGARLERALMNFMVDLHTDKQGYTEMNTPVLMSPSAMRGTGQIPKFKEDMFYC---EKDD 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           M   PT E  +T++    I    +LP  +      FR E     R   G++R+ +F   +
Sbjct: 225 MYLAPTAEVPVTNLLGGEILEQGSLPIYYTAFTQCFRREAGSAGRDTRGLIRNHQFEKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTG 217
              F + P  S     K+  +   I   L +    +R  SG +G    ++++  V   + 
Sbjct: 285 MVKF-VEPSTSYDELEKLTNNAEEILQLLEIPYRVVRLCSGDLGFSSAMTYDIEVWMPSY 343

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              V  S         +   +       N      
Sbjct: 344 NRYVEISSCSNFEDFQARRANIRYRDENNKPQYVH 378


>gi|116630183|ref|YP_815355.1| seryl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|311110225|ref|ZP_07711622.1| serine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122272880|sp|Q041F5|SYS_LACGA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116095765|gb|ABJ60917.1| seryl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|311065379|gb|EFQ45719.1| serine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 436

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V+    +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVSNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFTEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I   + LP         FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRGKILDAKQLPINVTAFSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     +  + S     K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKI-VDEDSSWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRSLIRYRDENGKLHLAH 385


>gi|224367377|ref|YP_002601540.1| HisS [Desulfobacterium autotrophicum HRM2]
 gi|259511944|sp|C0QFI0|SYH_DESAH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|223690093|gb|ACN13376.1| HisS [Desulfobacterium autotrophicum HRM2]
          Length = 425

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 140/438 (31%), Gaps = 41/438 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDS 88
           MI Q  +G    LP        +     +     G  E+ +P ++  +L+  S G   D 
Sbjct: 1   MI-QTIRGFRDILPGETPLWQTIERAASQLFEDFGFQEIRLPLIERTELFARSIGEVTDI 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR  + +   P     +   +  H     +     Y +   FR E RP+ G
Sbjct: 60  VEKEMYTFPDRKGENITLRPEATASVVRSYIQHKMYAADPIQKLYTMGPMFRRE-RPQKG 118

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R+F   +A  F +          ++ +    +F RLGL  +     S       P+
Sbjct: 119 --RYRQFFQINAEVFGIASPYIDA---QLILLLNELFKRLGLTDLTAHLNSLGCRECRPL 173

Query: 203 GGDLSHEFIV------LADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAP 255
                 EF+V       +D            +D  +P       D  +  + +    +  
Sbjct: 174 FHRALTEFLVSKQDRLCSDCRRRMDKNPLRTLDCKVPGCREAMQDAPTTLDHLCSDCSDH 233

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           +         +  D      +   RG++      F   T     + A    A G  +   
Sbjct: 234 FTTVKATLKAQGVDF--LVDKTLVRGLDYYSRTAFEIQTT---ALGAQSAVAGGGRYDAL 288

Query: 314 MGSYGIGAMRVVAAVI------ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   G   +  +   I      E     KG   P    P  + +I +        +    
Sbjct: 289 IKELGGPEVPAIGFAIGLDRLAEVMAQLKGCPAPR--GP-DLFIIPLGPG---AMEKAYL 342

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +RL+ VG     D  G+ + S    AD L     +I+  +    +   +++  T  + 
Sbjct: 343 CSSRLNLVGIRSETDYNGKSLKSLMKRADKLNAGHALILDYRQPDKNAPVLRNMKTREQV 402

Query: 428 DMSLEEVINYASHRFSNN 445
            + LE+  +      +N 
Sbjct: 403 TLGLEDPTDEVIKILTNE 420


>gi|15800756|ref|NP_286770.1| seryl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|12514055|gb|AAG55380.1|AE005278_6 serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Escherichia coli O157:H7 str. EDL933]
          Length = 430

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDALYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|46578654|ref|YP_009462.1| seryl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|67461806|sp|Q72FH6|SYS_DESVH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|46448065|gb|AAS94721.1| seryl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232527|gb|ADP85381.1| seryl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 424

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 13/220 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +     +    +     +      G  E+  P + +      +G+   + +++ RL   
Sbjct: 164 VYWKWAARLERALANYFLDTHISANGYTEVLPPFMVNRKTMTGTGQLPKFEEDLFRLESW 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T++    I    +LP  +      FR E     +   G++R  +F
Sbjct: 224 D---YFLIPTAEVPLTNLHADEILEEGDLPLGYTAQTPCFRSEAGSYGKDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F   PE S     +M      +   LGL    +   SG +G   +     E  
Sbjct: 281 TKVEMVRF-AHPERSFDELERMRGHAEALLQNLGLPYRVITLCSGDMGFSATKTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           +       ++    +  DF     N  F            
Sbjct: 340 LPGQDKYREISSCSNCGDFQARRANIRFRPAGGGKPEFVH 379


>gi|300722523|ref|YP_003711813.1| serine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297629030|emb|CBJ89615.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Xenorhabdus nematophila ATCC 19061]
          Length = 429

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 15/217 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   +      + G +E  VP L + D    +G+   +G+++
Sbjct: 158 TGSRFVVMKGQIARLHRAIAQFMLNLHTEQHGYLETYVPYLVNYDSLYGTGQLPKFGEDL 217

Query: 94  L---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPR 146
                L + +       PT E  +T++ R  I     LP         FR E     R  
Sbjct: 218 FHTRPLEEESASNYALIPTAEVPVTNLVRDEILDESELPLKMTAHTPCFRSEAGSYGRDT 277

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--- 203
            G++R  +F   +     + PE S  +  ++     ++   L L    M   +G +G   
Sbjct: 278 RGLIRMHQFDKVELVQI-VHPEKSMEALEELTGHAEKVLQLLNLPYRKMLLCTGDMGAGA 336

Query: 204 -GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                 E  + A     ++    +  DF        F
Sbjct: 337 RKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQARF 373


>gi|302872935|ref|YP_003841568.1| seryl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307686551|ref|ZP_07628997.1| seryl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302575792|gb|ADL49804.1| seryl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 426

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 95/290 (32%), Gaps = 36/290 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + +   +   +  G  E+  P + + +    +G+   + ++   +   
Sbjct: 167 FYRGLGARLERALISYFLDTHVDINGYTEIMPPLMANRNSMKGTGQLPKFEEDAFTIQ-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+ +R  I     LP         FR E     R   G++R  +F
Sbjct: 225 -NNGYFLIPTAEVPVTNYYRDEILVGEELPIKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F    E S    +K+      I   LGL    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKQEQSYEELDKLVKDAESILEGLGLPYRKVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +  +   S  ++F+D  +  + ++      A    VH            
Sbjct: 338 ---DLEVWMPSYNKYVEISSCSNFEDFQARRANIKYREDAKAKPQFVHTLNG-------- 386

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                G+ VG  F         +   ++  DG     ++    +G + V+
Sbjct: 387 ----SGLAVGRTF-------AAILENYQNEDGSVTIPEVLRKYMGGVEVI 425


>gi|238852918|ref|ZP_04643319.1| serine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|238834454|gb|EEQ26690.1| serine--tRNA ligase [Lactobacillus gasseri 202-4]
          Length = 436

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V+    +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVSNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFTEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I   + LP         FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRGKILDAKQLPINVTAFSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     +  + S     K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKI-VDEDSSWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRSLIRYRDENGKLHLAH 385


>gi|212635388|ref|YP_002311913.1| seryl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|226701397|sp|B8CP82|SYS_SHEPW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|212556872|gb|ACJ29326.1| Seryl-tRNA synthetase, class IIa [Shewanella piezotolerans WP3]
          Length = 428

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 19/230 (8%)

Query: 19  EIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMS 70
           E+  H  +  T  G+  +++    G    +  GQ A     +   + +      G  E  
Sbjct: 135 EVKDHVELGETLGGLDFKNAVKLTGSRFIIMKGQIARMHRALAQFMLDLHTTEHGYTEAY 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           VP L + D  + +G+   +G+++          + +   PT E  +T+I R  I    +L
Sbjct: 195 VPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNIARDSIIDEDDL 254

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   G++R  +F   +     + PE S  +  ++      +
Sbjct: 255 PVMMTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL-VKPEDSMQALEELTGHAETV 313

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             +LGL    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 314 LQKLGLPYRTVVLCTGDMGFGAAKTFDIEVWLPAQDTFREISSCSNMQDF 363


>gi|195978984|ref|YP_002124228.1| histidyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|229558734|sp|B4U0K6|SYH_STREM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|195975689|gb|ACG63215.1| histidyl-tRNA synthetase HisS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 426

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 138/430 (32%), Gaps = 49/430 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    L +       V  + RE   +    E+  P  +  ++   S     D   K
Sbjct: 4   QKPKGTQDILSVAAAKWQYVEGVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDELRPR 146
           EM    D+ D+ +   P   E    + RS++++         P   Y I   FR E RP+
Sbjct: 64  EMYDFYDKGDRHITLRP---EGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------- 199
            G  R REF       F      +      M  +Y  +F RLG+K + +   S       
Sbjct: 120 AG--RLREFHQIGVECFGSANPATDVETIAM--AYH-LFERLGIKGVTLHLNSLGNAASR 174

Query: 200 -----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                       P+   LS +     D    +V  SK+  D    +      D +   S 
Sbjct: 175 AAYRQALIDYLSPMRETLSKDSQRRLDENPLRVLDSKEKEDKIAVANVPSILDYLDEESQ 234

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA- 305
                            +             RG++     IF F T+          G  
Sbjct: 235 AHFDAVRSML-------EALAIPYVIDTNMVRGLDYYNHTIFEFITEVDQSELTICAGGR 287

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG   Y    +       +    +    D +G+  P       + +  + A   V   A
Sbjct: 288 YDGLVEYFGGPATPGFGFGLGLERLLLILDKQGVELPVEEG-LDVYIAVLGADANV---A 343

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   + + G  V  D +G +I +QF  AD     + + +G   +   +  +KH  T 
Sbjct: 344 ALALTQAIRRQGFTVERDYLGRKIKAQFKSADTFKAKVVITLGESEIKAGQAVLKHNQTR 403

Query: 425 IREDMSLEEV 434
               +S +++
Sbjct: 404 QEMTVSFDQI 413


>gi|21226967|ref|NP_632889.1| seryl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|30173179|sp|Q8PYJ6|SYS_METMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|20905281|gb|AAM30561.1| Seryl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 422

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 15/222 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G   +  +G K    +   + +   R G +E+  P L +      +G+   +  +M  
Sbjct: 160 GQGFAVYKGMGAKLERALINFMLDVHTRQGYLEVFPPVLINEKAMTGTGQLPKFKDDMYG 219

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMR 151
             D         PT E  +T++F        NLP         FR E         G++R
Sbjct: 220 CTD----GFYLAPTAEVPVTNLFMDEYME--NLPVFLTAYTACFRREAGKHGQDTRGIIR 273

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
           + +F   +   F + PE S     K+ +    I   L L    +   +G +G   +    
Sbjct: 274 NHQFNKVELVKFVM-PETSYEELEKLTLDAEEILKLLKLPYRVVSLCTGDLGFSAAKTYD 332

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            E  V       ++    +F +F     N  +        + 
Sbjct: 333 LEVWVPTQEKYREISSCSNFDNFQARRANIRYRTPEGPQFVH 374


>gi|330814078|ref|YP_004358317.1| seryl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487173|gb|AEA81578.1| seryl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 392

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 14/207 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E +VP L +      +G+   +  +  +     +  +   PT
Sbjct: 146 RALVNFMLDIHTEENGYDEYNVPILVNTKAMYGTGQLPKFRDDQFQT----NNDLWLIPT 201

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++  + I  Y  LP  +      FR E     +   G+MR  +F   +  S  +
Sbjct: 202 GEVPLTNMVANKITKYEKLPLRYVAATPCFRLEAGSAGKDTKGMMRQHQFSKVELVSI-V 260

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
            PE  +    K+  S  R+   L L    M   +G +G         E  + +     ++
Sbjct: 261 QPEFREKELEKLLKSAERVLELLKLPYRVMLLSTGDMGFSAEKTYDIEVWIPSQEKYREI 320

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSI 248
                   F        +  + + N +
Sbjct: 321 SSCSSCSTFQSNRMKARYKTVDNKNEL 347


>gi|254372616|ref|ZP_04988105.1| hypothetical protein FTCG_00180 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570343|gb|EDN35997.1| hypothetical protein FTCG_00180 [Francisella novicida GA99-3549]
          Length = 262

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D  
Sbjct: 6   KIAKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKL--EGDFE 63

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 64  YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 123

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   +G + S   +     ++  +L L    M+  +G +G         E  + + 
Sbjct: 124 LVHITAADKG-EESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQ 182

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 183 NTYREISSCSWCGDF 197


>gi|20806566|ref|NP_621737.1| seryl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|254478338|ref|ZP_05091717.1| seryl-tRNA synthetase [Carboxydibrachium pacificum DSM 12653]
 gi|30173181|sp|Q8RDJ5|SYS_THETN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|20515006|gb|AAM23341.1| Seryl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|214035696|gb|EEB76391.1| seryl-tRNA synthetase [Carboxydibrachium pacificum DSM 12653]
          Length = 425

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +    + G  E+  P L        +G+   + ++  ++ 
Sbjct: 162 FVFYKGLGARLERALINFMLDLHIEKHGYKEVFPPFLVHRRSMFGTGQLPKFEEDAFKV- 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+++R  I     LP         FR E     R   G++R  
Sbjct: 221 --EGTDYFLIPTAEVPVTNLYRETIIDGEQLPIYHCAYSACFRQEAGAAGRDTRGLIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F   P+ S     KM      +   LGL    +   +G +G   S ++ + 
Sbjct: 279 QFDKVELVKF-TEPDKSYEELEKMTRDAEEVLQALGLPYRVVAICTGDLGFTASKKYDIE 337


>gi|319655041|ref|ZP_08009111.1| seryl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317393265|gb|EFV74033.1| seryl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 425

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + +      +G+   + ++   + 
Sbjct: 163 FVFYKGLGARLERALFNFMLDLHTDEHGYKEVLPPYMVNRTSMTGTGQLPKFEEDAFLIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +       PT E  +T++ R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SED---YFLIPTAEVPVTNMHREEILNADELPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     ++   LGL    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEESYEELEKLTGHAEKVLQMLGLPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|294155542|ref|YP_003559926.1| glycine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600446|gb|ADE19942.1| glycine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 468

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 169/469 (36%), Gaps = 74/469 (15%)

Query: 19  EIASHKLMLRTGMIHQHSK---GI---YSWLPLGQKALDNV-----NAIIREEQNRTGAI 67
           EI +H  +  +G + Q S+   G+   + + PLG    DN+        I +E N     
Sbjct: 25  EIVNH--LKSSGFVFQGSEIYGGLSNTWDYGPLGSLLKDNIAYSWKQNFIWKEANN---H 79

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEM---------LR----LADRNDKAMIYGPTHEEVM 114
            +    L + ++WV SG   ++   +          R    + + N   +    T EE  
Sbjct: 80  LIDSKILMNPNVWVTSGHVSNFSDPLIENKINQKRYRADKLIQEINPDIIPEKMTFEE-- 137

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA-YSFDLTPEGSKHS 173
             IF +                     E++    +  +++ + +D+     L PE ++  
Sbjct: 138 MQIFLNEHMKEYEGSK--ATWG-----EIKKFNLMFETKQGVTEDSKSKVYLRPETAQ-- 188

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQVFCSKDFMDF 230
              +F+++  +          +    G IG    +E      +  T E +    + F   
Sbjct: 189 --GIFINFKNVLRT---TRSKLPLGIGQIGKSFRNEVTPGNFIFRTREFEQMELEVFCYP 243

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            + S   ++      + ++    +P      VH+++                  G     
Sbjct: 244 ELASNTYEYYIQKCYDFVINLGVSPKLIRKRVHDKEELSHYSAGTTDIEFEFPFGWGELL 303

Query: 291 G----TKYSLP--MSAT-----FKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           G    T + L   MSAT     +   +  K     +    +G  R++ A++ ++++ + +
Sbjct: 304 GIANRTDFDLKAHMSATNESLEYLDPETNKKIIPFIIEPSVGLDRLMLAILCAAYEEEKL 363

Query: 339 ---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                         ++P+K++++ +        D  ++I+ +L +      +D+ G  IG
Sbjct: 364 EDGDTRIVLRLNKKLSPYKVAILPLVKK---LGDKAKEIFDKLIENSVQATYDETG-SIG 419

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            ++   D +G    + +    + D  V I+ R T  +  + ++++ NY 
Sbjct: 420 KRYRRQDAIGTFYCITIDYDSLEDDSVTIRERDTMNQTRIKIDDIKNYL 468


>gi|151946513|gb|EDN64735.1| glycyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 667

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 120/391 (30%), Gaps = 80/391 (20%)

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR----- 183
           PF    I   FR+E+ PR G++R REFLM +   F    + S   +N++    L      
Sbjct: 249 PFASASIGKSFRNEISPRAGLLRVREFLMAEIEHFVDPSDKSHPKFNEIKDIKLSFLPRD 308

Query: 184 ---------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIP 233
                    I   +G        ++  +G  ++  +  L   G  +     +  M   + 
Sbjct: 309 VQEAGSTEPIVKTVGEAVASRMVDNETLGYFIARIYQFLMKIGVDESKLRFRQHMANEMA 368

Query: 234 SENTDFDDIISLNSIVEQWTAPYAA--------TSDVHNEKLFDSLPENKRVSARGIEVG 285
               D  D     S         A          S    EKL      +  +     E+ 
Sbjct: 369 HYAADCWDGELKTSYGWIECVGCADRSAYDLTVHSKKTKEKLVVRQKLDNPIEVTKWEID 428

Query: 286 HIFYF-GTKYSL----------------------------PMSATFKGADG--------- 307
                 G K+                                +    G DG         
Sbjct: 429 LTKKLFGPKFRKDAPKVESHLLNMSQDDLASKAELLKANGKFTIKVDGVDGEVELDDKLV 488

Query: 308 -----------KDHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAPFKI 349
                      +++   +     G  R++ +V E S            + +P  VAP K+
Sbjct: 489 KIEQRTKVEHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKV 548

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L+ +  H  +      ++   L K       DD G  IG ++A  D LG P  V +  +
Sbjct: 549 LLVPLSNHKDLV-PVTTEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFE 607

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              D  V ++ R +  +   S+E+VI     
Sbjct: 608 SAKDHSVTLRERDSTKQVRGSVEDVIKAIRD 638



 Score = 41.5 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    +N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 41  SGLYDYGPPGCAFQNNIIDAWRKHFILEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMCR 100


>gi|167746630|ref|ZP_02418757.1| hypothetical protein ANACAC_01341 [Anaerostipes caccae DSM 14662]
 gi|167653590|gb|EDR97719.1| hypothetical protein ANACAC_01341 [Anaerostipes caccae DSM 14662]
          Length = 397

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 131/420 (31%), Gaps = 57/420 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  + ++        E+  P  +   L+  S     D   KEM    D+ ++++   
Sbjct: 4   RTYLENVFKDLCETYNIHEIITPVFEHTVLFQRSVGETTDVVQKEMYTFEDKGNRSITLK 63

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +  H       P   + I   FR E +P+ G  R R+             
Sbjct: 64  PEGTAGAIRAYLEHGMQNEPQPVKMFYITPAFRYE-KPQSG--RLRQHHQFGIEFVGAES 120

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             ++     +  +++    ++GL    +   S  IG           D  E  +      
Sbjct: 121 PLAEVELITLVTTFIN---KIGLSDAKLHINS--IGCS-----NCRKDYNEALLAYLHRH 170

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK------------ 275
            D   P+     +         +  +               D                  
Sbjct: 171 EDKLCPTCRERMEKNPLRVIDCKVPSCKEIIKDAPRTIDYLDEECREHFEELKSLLDSLN 230

Query: 276 ------RVSARGIEVGHI----FYFGTKYSLPMSATFKG----ADGKDHYVQMGSYGIGA 321
                     RG++        F  G  ++L     +       DGK     +G +G+G 
Sbjct: 231 IPYEVDTGIVRGLDYYTKTVFEFVNGEGFTLCGGGRYDNLVHEIDGKASMPSVG-FGMGV 289

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISL-INIKAHDQVCRDACEKIYARLSKVGCDVF 380
            R++  +     + +G   P   A   ++L + I   +   R    +I + L   G  V 
Sbjct: 290 ERILFFL-----EEEGAELP---AGRPLNLYVGILGKEAKARAY--EIVSGLRMEGFKVE 339

Query: 381 WDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            D +G   G +     A+ L     +I+G   + ++K  +K+  +G   ++SL+++ N  
Sbjct: 340 TDYLGR--GVKAQMKYANKLRAQNTIIIGENELKENKGRLKNMESGEEIEISLDDIKNAL 397


>gi|124025391|ref|YP_001014507.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166228593|sp|A2C182|SYH_PROM1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123960459|gb|ABM75242.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 423

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 134/419 (31%), Gaps = 45/419 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP   +    V +I  E  +R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMLDLLPAQSQGWQKVESIALEHFSRAGLQEIRTPILEQTELFSRGIGENTDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  ++    P     +      H     N P   +     FR E RP+ G  R R+F
Sbjct: 69  FDDRGGRSCTLRPEGTAPVARSIIQHGLLN-NGPQRLWYRGPMFRYE-RPQAG--RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA------ESGPIGGD---- 205
                    L    S      +          +GL  + +        E   I  +    
Sbjct: 125 HQIGVEFVGLASVMSDAE---VISIAWNFLKDVGLNDLTLEINSLGSNEDRNIFKEELKD 181

Query: 206 --------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY- 256
                   L  +     +    ++  SK+     + SE    +D +S  S          
Sbjct: 182 WLNQRFDLLDEDSQKRINVNPLRILDSKNNSTKELLSEAPSLNDFLSSESKTRFDYLQEL 241

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQ 313
                +  +  ++ +      S    E+    + G++ ++     + G     G      
Sbjct: 242 LVNLKIPYKINYNLVRGLDYYSHTAFEI-TSDHLGSQATVCGGGRYDGLISELGGPQAPS 300

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +G + IG  R+V         G  I+   S  P  + +I+     +       +I  +L 
Sbjct: 301 IG-WAIGMERLVIL------AGDKILQTKS--P-DVYVIH---KGKKAEQLALEITCQLR 347

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                +  D  G     QF  AD       +++G   VS  ++ +K      +++ S E
Sbjct: 348 SSNLIIELDYSGSSFSKQFKRADKSRAKWALVIGEDEVSKGQLLMKKLRDKQKDEESRE 406


>gi|70606652|ref|YP_255522.1| glycyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|68567300|gb|AAY80229.1| glycyl-tRNA synthetase class II [Sulfolobus acidocaldarius DSM 639]
          Length = 574

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R +   + +S+  K     +  P  ++P+ I++  +   D++ +
Sbjct: 422 GERVIPHVIEPSFGVERCLYLTLLNSYMEKDGRIILSLPKRLSPYDIAIFPLLEKDELIK 481

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +IY  L +   D+ +DD G  IG ++A  D +G P  + V    ++D+ V I+ R 
Sbjct: 482 -KAREIYDSLKE-RYDIIFDDSG-SIGKRYARVDEIGVPYSITVDPMTLTDNTVTIRDRD 538

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  +++ +++N     F 
Sbjct: 539 SWQQIRVNITDLMNVLDRLFK 559



 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 98/336 (29%), Gaps = 86/336 (25%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESG--------- 84
            G+Y   P+G +  + +  + R+   +  +    E+  P L    +   SG         
Sbjct: 29  AGLYDIGPIGVRIKNKIVDLWRKHFIKDNSDFVVEIDTPALTPYKVLEASGHVDNFTDPV 88

Query: 85  ----------RYDSYGKEMLRLADRN---------------------------------- 100
                     R D   +E+ ++                                      
Sbjct: 89  VECNSCHNVYRADHLVEEIAKVTTEGLPPSELDKIIREKGIKCPKCGGELGEVRLFNLLF 148

Query: 101 ---------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                    +KA +   T + + T   R +    + LP    QI    R+E+ PR G++R
Sbjct: 149 ETRIGPYSTNKAFLRPETAQGMFTSFKRVYEAFRQKLPIGIAQIGKVGRNEISPRQGLIR 208

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF + +   F       +   ++++   + I           R +    G +   ++ 
Sbjct: 209 MREFTIMEVEFFFDPNSDVEPPLDRLYDLEINIL----------RGDDKARGEEKYTKYK 258

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E  V          I S   +   I S     +        +    ++ +    
Sbjct: 259 FSEIVNEKIVINKWMAYWMGIASNFVNSLGISSFYFEEKLPHERAHYSKQTFDQIVV--- 315

Query: 272 PENKRVSARGIEV-GHIFYFGTKYSLPMSATFKGAD 306
                +    +E+ GH +   + Y L   + + G D
Sbjct: 316 -----IDNVKVEISGHAYR--SDYDLSRHSAYSGQD 344


>gi|312876134|ref|ZP_07736122.1| seryl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797120|gb|EFR13461.1| seryl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 420

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P L +    + +G+   + ++  +  D 
Sbjct: 164 FYRGLGARLERALINFMLDLHIEKHGYTEIFPPFLVARKSMIGTGQLPKFEEDAFKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I    +LP  +      FR E     +   G++R  +F
Sbjct: 223 ---DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    +   SG +G   +  + + 
Sbjct: 280 NKVELVKF-AKPEDSYDELEKLTADAEDVLKELGLPYRVVLLCSGDLGFSSAKTYDIE 336


>gi|301595146|ref|ZP_07240154.1| seryl-tRNA synthetase [Acinetobacter baumannii AB059]
          Length = 334

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 15/199 (7%)

Query: 17  DAEIASHKLMLR--TGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +     G+  + +    G    +  G   +    +   + +    + G  E
Sbjct: 133 DFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP L +AD    +G+   + +++ +L    +K     PT E  +T+  R  I     L
Sbjct: 193 AYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEKEYYLIPTAEVPVTNFVRDEIIDADRL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S  +  ++      I
Sbjct: 251 PLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQI-VKPETSMQALEELTAHAEGI 309

Query: 185 FHRLGLKSIPMRAESGPIG 203
              LGL    +    G +G
Sbjct: 310 LQALGLPYRKILLCGGDMG 328


>gi|148377324|ref|YP_001256200.1| seryl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|238686658|sp|A5IXJ4|SYS_MYCAP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148291370|emb|CAL58753.1| Seryl tRNA synthetase [Mycoplasma agalactiae PG2]
          Length = 422

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 13/216 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G K    +   + +     G  E SVP L   ++   +G+   +  ++  +   N   M 
Sbjct: 171 GAKLARALQNFMLDLHTANGYKEYSVPVLVKPEILFGTGQLPKFKDDLFFMEQTN---MY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++ + I      P         FR E     +   G++RS +F   +  
Sbjct: 228 LIPTAEVPLTNLYNNEIIDLSQ-PVRLTGFTECFRSEAGSGGKDMKGIIRSHQFKKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
               + E  +  + +M      +   L L    ++  +G +G      +  E  + ++  
Sbjct: 287 KI-TSEEDWEFEFKQMLEQAKLVLEELELPYRELQLCTGDLGFSSRTTVDLEVWLPSELK 345

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             ++       DF        + D  +         
Sbjct: 346 YREISSVSYMGDFQARRAMIRYRDDNNEVKFTHTMN 381


>gi|193217033|ref|YP_002000275.1| seryl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|238692483|sp|B3PNG9|SYS_MYCA5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|193002356|gb|ACF07571.1| seryl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 424

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 13/223 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G K +  +   + +     G  E+    L ++ +   +G+   +  ++ R++D
Sbjct: 164 FVLYKNAGAKLIRALANFMLDTHINNGYKEIMPAHLVNSKMLFGTGQLPKFKDDLFRVSD 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            +   +   PT E  +T+     I +    P  +      FR E     R   G++R  E
Sbjct: 224 SD---LWLIPTAEVPLTNYHYDEILNLNE-PIKYVAYTKCFRSEAGSGGRDTRGIIRQHE 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +     +  E +   + KM      I   L L    +   +G +G   +     E 
Sbjct: 280 FHKVELVKI-VRQEDAMGEWEKMVNDAKNILTLLELPYREILLCTGDMGFSSAKTIDLEI 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            + ++    +        DF        + D            
Sbjct: 339 WIPSEQRYRETSSISICKDFQARRAKIRYKDADGKTKYAFTMN 381


>gi|315637975|ref|ZP_07893160.1| serine--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315481823|gb|EFU72442.1| serine--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 411

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L + +    +G+   +  +M ++    ++ + 
Sbjct: 166 GALLNRALINYMIDFNRSRGFKFVNVPFLVNQNAMFGTGQLPKFKDDMYKV---EEEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T++F   I +  NLP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIALTNLFNDEILNAENLPLKMTAYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S   +P+ S+  +N+M      +   LGL    M   +G +G   +     E  +     
Sbjct: 283 SI-TSPKQSESVFNEMCECASDLLSSLGLAHRWMMLCTGDLGFSAAKTIDLEVWLPGQNQ 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 FREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|114320852|ref|YP_742535.1| seryl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311524|sp|Q0A7Z2|SYS_ALHEH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|114227246|gb|ABI57045.1| seryl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 424

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 19/231 (8%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQN-RTGAI 67
            PRD        +L  G+  + +    G    +  G  A     +   + +      G  
Sbjct: 135 RPRDHVELGE--LLDGGLDFEAAAKLTGARFVVMRGAVARLHRALIQFMLDTHTAEHGYQ 192

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+ VP + + D    +G+   +  ++  L    D      PT E  +T++ R  I +   
Sbjct: 193 EIYVPYMVNRDSLFGTGQLPKFAADLFHLDAEQDYY--LIPTAEVPVTNMARDEIIADGQ 250

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP  F      FR E     +   G++R  +F   +     + PE S  +   +      
Sbjct: 251 LPLKFACHTPCFRSEAGSHGKDTRGMIRQHQFEKVELVQM-VRPEASWEALEALTGHAET 309

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           I  RL L    +   +G +G   +     E  + A     ++    +F+DF
Sbjct: 310 ILQRLDLPYRVVTLCTGDLGFSSAKTYDIEVWLPAQETYREISSCSNFLDF 360


>gi|291276507|ref|YP_003516279.1| seryl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290963701|emb|CBG39534.1| seryl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 432

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 15/173 (8%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-------- 96
           +G +    +   + +   + G   +S P + +  +   +G+   + ++M R+        
Sbjct: 174 MGARLNRALINFMLDCNQKAGFELVSAPVIVNEKMLFGTGQLPKFAEDMFRIDGNMDPLH 233

Query: 97  --ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
              +   + +    T E  +T+++   I    +LP         FR E     R   G++
Sbjct: 234 VGEEEEKQDLYLISTSEITLTNLYYDEILQAEDLPLLLTTQTPCFRKEAGSAGRDTRGMI 293

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           R  +F   +  +    PE S     KM  +   I   LGL    ++   G +G
Sbjct: 294 RQHQFDKVELVAI-TKPEQSDAIQQKMIDTASGILRTLGLPHRLVQLCGGDLG 345


>gi|282164416|ref|YP_003356801.1| seryl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282156730|dbj|BAI61818.1| seryl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 421

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 15/222 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G   +  +G K    +   + +  +R G  E+  P L +      +G+   + ++M  
Sbjct: 160 GEGFTVYKGMGAKLERALINFMLDVHSRQGYTEVFPPVLMNEKAMTGTGQLPKFKEDMYA 219

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMR 151
             D         PT E  +T+++        NLP         FR E         G++R
Sbjct: 220 CTD----GYYLAPTAEVPVTNLYMDEYLE--NLPIYLTAYTACFRREAGKHGQDTRGIIR 273

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   +   F L PE S   + K+      I   L L    +   +G +G   +    
Sbjct: 274 QHQFNKVELVKFSL-PETSYEEHEKLTRDAEEILQLLKLPYRVINLCTGDLGFSAAKTYD 332

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            E  V A     ++    +F  +     N  +        + 
Sbjct: 333 IEVWVPAQGKYREISSCSNFESYQARRANIRYRTPEGPKFVH 374


>gi|291613882|ref|YP_003524039.1| histidyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291583994|gb|ADE11652.1| histidyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 423

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 136/439 (30%), Gaps = 51/439 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP           ++R+     G   + +P ++   L+  + G   D   K
Sbjct: 7   QAVRGMNDILPDEAGLWLWFEEVVRDWLEAYGYRNIRMPLVEPTALFKRAIGEVTDIVEK 66

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D  N   +   P            H   Y N P   Y     FR E RP+ G  
Sbjct: 67  EMYSFRDDLNGDELTLRPEGTASCVRAVLQHNLLY-NAPQRLYYSGPMFRHE-RPQKG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----------- 199
           R R+F      +              M     R++ +LG++ + ++  +           
Sbjct: 123 RYRQFHQIGVEAMGFAGPDIDAEQIVMCA---RLWKKLGIRDVALQINTLGDVAARQRHR 179

Query: 200 -GPIGGDLSHEFIVLAD------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              I     H+ ++ AD      +   ++  +K+     + +      D +  ++I    
Sbjct: 180 EKLIAYFEQHKDVLDADGQRRLYSNPLRILDTKNPAMQELVAAAPKLMDELDEDAITHFE 239

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDH 310
                        ++   L        R +        G + ++     F G        
Sbjct: 240 AVQAILQQHGIAFEINPRLVRGLDYYNRTVFEWVTTRLGAQGTICAGGRFDGLIEQIGGK 299

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                 + +G  R++A +        G+  P   AP  + +++     +  R    ++  
Sbjct: 300 PAPACGFAMGVERLLALL-----QEDGMQNPA--APLDVYVVH---QGEQARIQAWRVAE 349

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLG-----FPLQVIVGSKFVSDSKVEIK-HRLTG 424
            L   G  V     G     +   + +            I+G   V+ + V +K  R  G
Sbjct: 350 DLRDGGLRVLLHCGGGS--FK---SQMKKADASAAVCAAIIGDDEVAANVVMLKPLRSGG 404

Query: 425 IREDMSLEEVINYASHRFS 443
            ++ + L+++ +       
Sbjct: 405 EQQRVGLDDLQHKVRELIK 423


>gi|255943789|ref|XP_002562662.1| Pc20g01010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587397|emb|CAP85430.1| Pc20g01010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1334

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSH---DGKG----IIWPDSVAPFKISLINIKAH 357
            + +++   +     G  R++ +VIE S+    G      + +P ++AP K+ L+ +  H
Sbjct: 491 ENVREYTPNVIEPSFGIGRILYSVIEHSYWYRAGDETRGVLSFPPAIAPTKVLLVPLSTH 550

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   +++ ++L K G     DD    IG +++  D LG P  V V  + V D+   
Sbjct: 551 -ASFKPLTQRLTSKLRKAGVSNRVDDSSASIGKRYSRNDELGTPFGVTVDFQSVQDNTFT 609

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +   S +E++        
Sbjct: 610 LRDRDTTKQVRASEDEILQAVKSLVE 635



 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGV 149
           M + +    ++      P   +     F   ++  +  +PF    I   FR+E+ PR G+
Sbjct: 202 MFQTSIGPSSNMPGYLRPETAQGQFLNFAKLLEFNQQSMPFASASIGKSFRNEISPRAGL 261

Query: 150 MRSREFLMKDAYSFDLTPEGSKHS-YNKMFVSYLRIFHR 187
           +R REFLM +   +     G KHS ++++  + L +  R
Sbjct: 262 LRVREFLMAEIEHYVDPEGGKKHSRFDEVKDTELSLLDR 300



 Score = 43.8 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 26 MLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
          MLR  M +  S        G+Y + P G   + N+  + R+        +E+    L   
Sbjct: 20 MLRRRMFYTPSFEIYGGVSGLYDYGPPGTALIANMTDLWRKHFVLEEDMLEVDTTMLTPH 79

Query: 78 DLWVESGRYDSYGKEM 93
          ++   SG  D +   M
Sbjct: 80 EILKTSGHVDKFADWM 95


>gi|171920436|ref|ZP_02931750.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508559|ref|ZP_02958077.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|171902885|gb|EDT49174.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182676001|gb|EDT87906.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 473

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/491 (14%), Positives = 147/491 (29%), Gaps = 144/491 (29%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK------ 91
           + + PLG    +N+  +  +E        + +    + +  +W  SG  D++        
Sbjct: 35  WDYGPLGVLLKNNLKNLWWKEFVTRQKNIVGLDSAIILNPLVWKASGHLDNFSDPLIDCK 94

Query: 92  ------------EML-------------RLADRNDKAMIYGPTHEE-------VMTDIFR 119
                       E                     +   I+ PT ++           +F+
Sbjct: 95  NCKTRYRADKLIESFNKNIHIAENSTNEEFMKVLNDHKIFCPTCKQFNWTDIRHFNLMFK 154

Query: 120 SHI-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           +H                                  +LPF   QI   FR+E+ P   + 
Sbjct: 155 THQGVIEDPKNIVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNEITPGNFIF 214

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REF   +   F       + +   +F  YL                            
Sbjct: 215 RTREFEQMEIEFFLK-----EETAYDVFDKYLN--------------------------- 242

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                             ++ +     D       N++ +        +        F+ 
Sbjct: 243 ---------------QIQNWLVTCCGLDL------NNLRKHEHPREELSHYSKKTIDFEY 281

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
              +      GI     +      +L     T+   + K  Y   +    +G  R++ A+
Sbjct: 282 NFLHGFSELYGIAYRTNYDLSVHMNLSKKDLTYFDEETKQKYIPHVIEPSVGVERLLYAI 341

Query: 329 IES-------SHDGKGII--WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +         ++D + I+      +AP+KI+++ +       ++  E +Y ++  +   V
Sbjct: 342 LTEATFIEKLANDEERILMNLKYDLAPYKIAVMPLVNK---LKEKAEAVYNKILDLNVSV 398

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIV-----GSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +D+ G  IG ++   D +G    + +     G +   D    I+ R T  ++ + L E+
Sbjct: 399 TFDNSG-SIGKRYRRQDAIGTIYCITIDYDSFGDEH--DPTFTIRERNTMAQKRIKLSEL 455

Query: 435 INYASHRFSNN 445
             Y S +   N
Sbjct: 456 SLYLSQKAHEN 466


>gi|197294640|ref|YP_001799181.1| seryl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|171853967|emb|CAM11930.1| Seryl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 418

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 6/173 (3%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +  +  G  E+  P + +      +G+   +  E+ +++  +    
Sbjct: 162 LGARLERALIQFMMDLHSTKGYQEIIPPYIINEKSMFATGQLPKFEAEVFKISH-HKNNW 220

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E    ++ R        LP  +      FR E         G+ R  +F   + 
Sbjct: 221 YLNPTAEVPTINLHRDEFFPRNALPLKYVAYTTSFRQEAGSAGSYSRGIFRQHQFNKVEL 280

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             F   P+ S    ++M      +   L L    +   +G +G  +S  + + 
Sbjct: 281 IQFCH-PQNSYSLLDQMLQDSCAVLDLLKLPYRVIVLSTGDLGFGMSKTYDIE 332


>gi|148378026|ref|YP_001252567.1| seryl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153931011|ref|YP_001382425.1| seryl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153937253|ref|YP_001385977.1| seryl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|166219865|sp|A7FQ53|SYS_CLOB1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166219866|sp|A5HXR1|SYS_CLOBH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148287510|emb|CAL81569.1| seryl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152927055|gb|ABS32555.1| seryl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152933167|gb|ABS38666.1| serine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 426

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +   ++ +   +    + G  E+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERSLISYFLDTHTEKHGYTEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEILKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYEELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDAKAKPQYVHT 383


>gi|78044066|ref|YP_361018.1| histidyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123743144|sp|Q3AA16|SYH_CARHZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|77996181|gb|ABB15080.1| histidyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 423

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 8/171 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           M+ Q  KG     P      + +    RE   R G  E+  P  +  +L+        D 
Sbjct: 1   MLTQKPKGTNDLFPPEVFLWEEIERKFREVCRRFGYQEIRTPIFEHTELFERGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P     +   +    K     P  ++ I   FR + +P+ G
Sbjct: 61  VEKEMYTFLDKAGRSITLRPEGTAAVIRAYVEAKKYADPGPAKYFYIGPMFRYD-KPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             R R+F                     M    L  +  +GL  + +R  S
Sbjct: 120 --RLRQFHQLGVEILGSDEPMVDAEVILMA---LEFYREIGLNDVELRLNS 165



 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  R+    +   L ++   V  D  G+ + +Q   A+ L     +I+G + +   +  +
Sbjct: 335 EEAREYGFPLINELRRLNLWVETDYQGKSLKAQLKAANRLKAKAALIIGEEELKSGRFIL 394

Query: 419 KHRLTGIREDMSLEEVIN-YASHR 441
           +   TG + ++S +E+I  YA  R
Sbjct: 395 RDLDTGEQVELSRDELIEKYARER 418


>gi|303235731|ref|ZP_07322338.1| serine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302484178|gb|EFL47166.1| serine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 429

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 100/317 (31%), Gaps = 67/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P L +    + +G+      +M  
Sbjct: 164 GAGFPIYIGKMARFQRALEAFFLEEARKSGYLEVQPPLLVNQASGLGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +   +   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 224 VQADD---LYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSSCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    D TP+ S  S N+M      +  +L L    +R      GGD+S    
Sbjct: 281 LHQFDKVEIVRID-TPQHSYESLNEMLEHVESLLQKLELPYHILRLC----GGDMSF--- 332

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T   C    +         +   + +  S                        
Sbjct: 333 -------TSAICYDFEVWSAAQKRWLEVSSVSNFESYQANRLHC---------------- 369

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                                +Y           D K      +    +   R+VAA+IE
Sbjct: 370 ---------------------RYRKA-------EDKKIELCHTLNGSALALPRIVAAIIE 401

Query: 331 SSHDGKGIIWPDSVAPF 347
           ++   +GI  P ++ P+
Sbjct: 402 NNQTPEGIRVPKALVPY 418


>gi|188997109|ref|YP_001931360.1| seryl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229560100|sp|B2VA33|SYS_SULSY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|188932176|gb|ACD66806.1| seryl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 417

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 75/209 (35%), Gaps = 13/209 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G  E+  P L   ++   +G+   +  ++ ++ D +   +   PT
Sbjct: 176 RALINFMLDVHTKQHGYTEVWTPALVKPEILFGTGQLPKFKDDLYKIEDED---LYLIPT 232

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I +  +LP  +      FR E     +   G++R  +F   +     +
Sbjct: 233 AEVTLTNLHADEILNEEDLPKYYTAYTPCFRKEAGSHGKDVKGILRQHQFDKVELVKI-V 291

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
            PE S +   K+     +I   L +    +   +G +G   +     E  + +     ++
Sbjct: 292 KPEDSYNELEKLVNEAEKILQLLEIPYRVVLLCTGDMGFSAAKTYDIEVWIPSQNRYREI 351

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +  DF        + D    N  V 
Sbjct: 352 SSCSNTEDFQARRAKIRYKDKDGKNHYVH 380


>gi|319740179|gb|ADV60383.1| glu- + pro-tRNA synthetase [Paonias myops]
          Length = 134

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R ++     + G  +S      +  A+  + +YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAVQGATSHHLGQNFSKMFEIVYDDAETHEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++             +   D+C+++   L   G     D       
Sbjct: 74  GLVLPPRIAEIQAIVVPCGITASXTPEERKALIDSCKELVHDLEAAGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|313678192|ref|YP_004055932.1| serine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950294|gb|ADR24889.1| serine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 422

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 13/223 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G K    +   + +     G  E +VP L   ++   +G+   +  ++  +  
Sbjct: 164 FVIFKKDGAKLARALRNFMIDLHTANGYEEYAVPVLVKPEILFGTGQLPKFKDDLFYMEQ 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N   M   PT E  +T+++   I +    P         FR E+    +   G++R+ +
Sbjct: 224 TN---MYLIPTAEVPLTNLYNDEIIN-LEKPIRLTGFTECFRSEVGSGGKDMRGIIRNHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEF 210
           F   +      + +  +  YN+M      +   L L    ++  +G +G      +  E 
Sbjct: 280 FKKVELVKI-TSEKDWETEYNQMLEQAKLVLEELELPYRELKLCTGDLGFSSRTTVDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            + ++    ++       DF        + D  +         
Sbjct: 339 WLPSELKYREISSVSYMGDFQARRAMIRYRDENNEVQFAHTMN 381


>gi|296272111|ref|YP_003654742.1| seryl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096286|gb|ADG92236.1| seryl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 414

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +   + +     G  E  VP + + +    +G+   +G+++ ++     + +   PT 
Sbjct: 175 RALINYMLKFNAERGFEEWYVPFMANTNALQGTGQLPKFGEDLFKI---EGEDLYLIPTA 231

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T+++   I     LP+        FR E     R   G++R  +F   +  +   T
Sbjct: 232 EVALTNLYNDEIIPVEELPYLMTSYTPCFRKEAGSAGRDTRGLIRQHQFDKVEMVAI-TT 290

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            E S+  + KM      +   LGL    +   +G +G   +
Sbjct: 291 QEQSEEVFEKMVACASDLLTSLGLAHQKVMLCTGDLGFSAT 331


>gi|269120640|ref|YP_003308817.1| seryl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268614518|gb|ACZ08886.1| seryl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 423

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 14/195 (7%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +  K    +   + +      G  EM  P L   D+ V +G+   +  +  +  D     
Sbjct: 168 MAAKLERALINFMLDLHTSEHGYEEMLTPQLVKRDIMVGTGQLPKFEDDAYKTTD----D 223

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           M   PT E  +T++ +  I +   LP  +      FR E     +   G++R  +F   +
Sbjct: 224 MFLIPTAEVTLTNLHKDEILAESELPKYYCGFTACFRREAGSHGKDMKGILRQHQFNKVE 283

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                + PE S     KM  +   +  +L +    +   SG IG   S     E  + + 
Sbjct: 284 MVKI-VHPENSYDELEKMVNNAETVLQKLNIPYRVLALCSGDIGFGASKTYDLEVWIPSQ 342

Query: 216 TGETQVFCSKDFMDF 230
               ++    +  DF
Sbjct: 343 NKYREISSCSNTEDF 357


>gi|262305767|gb|ACY45476.1| glu- + pro-tRNA synthetase [Neogonodactylus oerstedii]
          Length = 134

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  ++  +   F+  + K   +V   S+GI   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFAKMVDIVFEDPETKQKKFVYQNSWGIT-TRSIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           G++ P  VA  +  ++ +       K        AC  +   L   G  V  D    
Sbjct: 74  GLVLPPRVALMQAIIMPVGITAKTTKEEKDKLMSACTALEEELKVGGVRVRSDFRDH 130


>gi|319763712|ref|YP_004127649.1| histidyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|317118273|gb|ADV00762.1| histidyl-tRNA synthetase [Alicycliphilus denitrificans BC]
          Length = 429

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 138/441 (31%), Gaps = 59/441 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      + +   +R    R     +  P ++   L+V   G   D   KEM 
Sbjct: 8   KGMNDILPPESARWEWLEDTVRTLMARYAYRNIRTPIVEPTPLFVRGLGEVTDIVEKEMY 67

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              DR N + +   P     +      H   Y +     Y +   FR E RP+ G  R R
Sbjct: 68  SFEDRLNGEQLTLRPEATAGVVRAVVEHSMLY-DGGKRLYYMGPMFRHE-RPQRG--RYR 123

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD-------- 205
           +F    A +       +      + +    ++  LGLK + +   S     +        
Sbjct: 124 QFHQIGAEALGFPGAEADAE---IILLAHALWAELGLKDVRLELNSLGQPDERRAHRAAL 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           ++H         E             + ++N     ++     +  +    +       +
Sbjct: 181 IAHLEQHQDALDEDARRRLHSNPLRILDTKNPAMQAVVEAAPRLIDFLGEASLKHFETVK 240

Query: 266 KLFDSLPENK---RVSARGIEVG--HIFYF-------------GTKYSLPMSATFKGADG 307
            + D+            RG++     +F F             G +Y        +   G
Sbjct: 241 AILDANGVAWSLNPRLVRGMDYYNLTVFEFVTDQLGSQGTICGGGRY----DYLIEQIGG 296

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K        + +G  RV+  + E           ++ AP  ++       D         
Sbjct: 297 KPAPAV--GWALGVERVLELIKEQ----------EAQAPRPVADAYAIVPDASALPVVMA 344

Query: 368 IYARLSKVGCDVFWDD---MGEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
              RL  +G  V        GE +GS    F  AD  G    ++ G+  ++   V IK  
Sbjct: 345 ALQRLRALGVSVQMHSPTAAGEGMGSMKSQFKKADASGSRFALVFGADEMARGAVTIKPL 404

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G + +  L  + ++A+  
Sbjct: 405 RDGGEQVERPLATLADWAASL 425


>gi|212692033|ref|ZP_03300161.1| hypothetical protein BACDOR_01528 [Bacteroides dorei DSM 17855]
 gi|237724685|ref|ZP_04555166.1| seryl-tRNA synthetase [Bacteroides sp. D4]
 gi|265755598|ref|ZP_06090219.1| seryl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212665425|gb|EEB25997.1| hypothetical protein BACDOR_01528 [Bacteroides dorei DSM 17855]
 gi|229436880|gb|EEO46957.1| seryl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|263234204|gb|EEZ19797.1| seryl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 424

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 104/316 (32%), Gaps = 66/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E   +G  E+  PT+ +      +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINFFLDEARASGYEEIMPPTVVNTASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSKQSHQEMLDHVEGLLKKLELPYRILRLC----GGDMSFTAA 335

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +  D    +V+         + S +    D    N +  ++ +    T   H        
Sbjct: 336 LCFDF---EVYSEAQQRWLEVSSVSN--FDTYQANRLKCRYRSAEKKTELCHTLN----- 385

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                              G+  +LP                         R+VAA++E+
Sbjct: 386 -------------------GSALALP-------------------------RIVAALLEN 401

Query: 332 SHDGKGIIWPDSVAPF 347
           +   +GI  P ++ P+
Sbjct: 402 NQTPEGIRIPKALVPY 417


>gi|161349975|ref|NP_280742.2| seryl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169236663|ref|YP_001689863.1| seryl-tRNA synthetase [Halobacterium salinarum R1]
 gi|30179880|sp|Q9HNJ8|SYS_HALSA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229559949|sp|B0R6Z8|SYS_HALS3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167727729|emb|CAP14517.1| serine--tRNA ligase [Halobacterium salinarum R1]
          Length = 460

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 11/239 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G Y     G +    +   + +     G  ++  P   SA     +G++  + ++  R
Sbjct: 163 GGGFYFSKGAGARLEHALVQFMLDVHREQGYEDVFPPMPVSARSMEGTGQFPKFVEDAYR 222

Query: 96  LADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PR 146
           +   ND           PT E  +T+++R  I    +LP         FR E        
Sbjct: 223 IGGENDADYDDDDLWLLPTAEVPVTNMYRDEILLDDDLPVKHQAYSPNFRREAGEHGTET 282

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G++R  +F   +  +F + PE S   ++ +      +  RL L    +   +G +G   
Sbjct: 283 RGIVRVHQFNKVELVNF-VRPEDSAERFHGLLDEAEAVLRRLDLPYRVLEMCTGDMGFTQ 341

Query: 207 SHEFIVL-ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           + ++ +     G+      +    +   S  ++F D  +  + ++     + +   +H 
Sbjct: 342 AKKYDIEVWAPGDDMDGGPEMGGRWLEVSSVSNFKDFQARRADIQYRPERHESAEHLHT 400


>gi|33866426|ref|NP_897985.1| seryl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|46577187|sp|Q7U518|SYS_SYNPX RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33633204|emb|CAE08409.1| putative seryl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 425

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 12/200 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L ++     SG+   +  +  R + 
Sbjct: 166 FVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNSASLTGSGQLPKFADDCFRCS- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 225 --EDDLWLTPTAEVPVTSLHRDEIIPADQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F   P+ S  ++ ++      +   L L    +   +  IG         E 
Sbjct: 283 FNKVELYWF-AHPDHSAEAHAQITADAEAVLQALELPYRVLDLCTADIGFSAQRTYDLEV 341

Query: 211 IVLADTGETQVFCSKDFMDF 230
            +       ++       DF
Sbjct: 342 WLPGAEAYREISSCSVCGDF 361


>gi|332798257|ref|YP_004459756.1| Seryl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332695992|gb|AEE90449.1| Seryl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 425

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 16/224 (7%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +    +    E+  P + + D    +G+   + ++  +LA+ ND   
Sbjct: 169 GARLERALINFMLDLHTQKHNYKEIFPPFIVNRDSMTGTGQLPKFEEDAFKLANNND--Y 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I S  +LP  +      FR E     R   G++R  +F   + 
Sbjct: 227 FLIPTAEVPVTNLHRDEILSKDDLPIYYVAYSGCFRAEAGSAGRDTRGLIRQHQFNKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F    + S     K+      +   LGL    +   +G +G          A T + +
Sbjct: 287 VKF-TDAQSSMQELEKLTADAEEVLKLLGLPYRVVVLSTGDLGFSS-------AKTYDIE 338

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           V+         I S + +F D  +  + ++      A    VH 
Sbjct: 339 VWMPSYNRYVEISSCS-NFKDFQARRARIQYRPEKGAKPVYVHT 381


>gi|300363019|ref|ZP_07059189.1| serine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300353069|gb|EFJ68947.1| serine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 436

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V+    +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVSNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFTEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I   + LP         FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRGKILDAKQLPINVTAFSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     +  + S     K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKI-VDEDSSWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRSLIRYRDENGKLHLAH 385


>gi|170760371|ref|YP_001785350.1| seryl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|238688798|sp|B1L1M0|SYS_CLOBM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169407360|gb|ACA55771.1| serine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 426

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +   ++ +   +    + G  E+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERSLISYFLDTHTEKHGYTEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEILKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYEELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDAKAKPQYVHT 383


>gi|10581491|gb|AAG20222.1| serine-tRNA synthetase [Halobacterium sp. NRC-1]
          Length = 474

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 11/239 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G Y     G +    +   + +     G  ++  P   SA     +G++  + ++  R
Sbjct: 177 GGGFYFSKGAGARLEHALVQFMLDVHREQGYEDVFPPMPVSARSMEGTGQFPKFVEDAYR 236

Query: 96  LADRNDKAM-----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PR 146
           +   ND           PT E  +T+++R  I    +LP         FR E        
Sbjct: 237 IGGENDADYDDDDLWLLPTAEVPVTNMYRDEILLDDDLPVKHQAYSPNFRREAGEHGTET 296

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G++R  +F   +  +F + PE S   ++ +      +  RL L    +   +G +G   
Sbjct: 297 RGIVRVHQFNKVELVNF-VRPEDSAERFHGLLDEAEAVLRRLDLPYRVLEMCTGDMGFTQ 355

Query: 207 SHEFIVL-ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           + ++ +     G+      +    +   S  ++F D  +  + ++     + +   +H 
Sbjct: 356 AKKYDIEVWAPGDDMDGGPEMGGRWLEVSSVSNFKDFQARRADIQYRPERHESAEHLHT 414


>gi|238757608|ref|ZP_04618792.1| Seryl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238704113|gb|EEP96646.1| Seryl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 387

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 83/259 (32%), Gaps = 21/259 (8%)

Query: 12  QENPRDAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
           +    D E+  H  +     G+         G    +  GQ A     +   + +    +
Sbjct: 128 EPRKYDFEVRDHVSLGEMAGGLDFAAGVKLTGARFVVMKGQIARMHRALAQFMLDLHTEK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFR 119
            G +E  VP L +      +G+   +G ++       +++        PT E  +T++ R
Sbjct: 188 HGYLETYVPYLVNHATLYGTGQLPKFGDDLFHTKPLEEESDSSNYALIPTAEVPVTNLVR 247

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I    +LP         FR E     R   G++R  +F   +       PE S  +  
Sbjct: 248 DEILEEDSLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-TRPEDSMAALE 306

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFP 231
           ++     ++   L L    M   +G +G   S     E  + A     ++    +  DF 
Sbjct: 307 ELTGHAEKVLQLLDLPYRKMLLCTGDMGFGSSKTYDLEVWLPAQNTYREISSCSNMWDFQ 366

Query: 232 IPSENTDFDDIISLNSIVE 250
                    +      +  
Sbjct: 367 ARRMQARCRNKTDRKPVWF 385


>gi|223041022|ref|ZP_03611280.1| seryl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222877694|gb|EEF12817.1| seryl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 414

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 78/205 (38%), Gaps = 12/205 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G +    +   + +  +  G   ++VP L +++    +G+   + +++ ++ D +   +
Sbjct: 169 MGARLSRALVNYMIDFNSARGFELVNVPFLVNSNTLYGTGQLPKFEEDLYKVQDED---L 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++   I    +LP         FR E     R   G++R  +F   + 
Sbjct: 226 YLIPTSEVPVTNLYNDEILPVESLPIKMTCYSACFRKEAGSAGRDTRGMIRQHQFEKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            S   TPE S    ++M      +   LGL    M   SG +G   +     E  +    
Sbjct: 286 VSI-TTPEQSAQMLDEMVACASDLLTSLGLPHRHMLLCSGDLGFSAAKTIDLEVWLPGQN 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++    +  DF        + D
Sbjct: 345 KYREISSVSNTRDFQARRAKIRYKD 369


>gi|299117081|emb|CBN73852.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 509

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 10/187 (5%)

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+S+P L +      +G+   + +++ +      ++     PT E  +T++ R  +
Sbjct: 259 HGYTEVSLPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQL 318

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                LP +   +   FR E     R   G++R  +FL  +   F  TPE S++ +  + 
Sbjct: 319 LDKAQLPMSLVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKF-TTPEDSRNEHEALT 377

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                +   L L    +   SG IG         E  +       ++    +  DF    
Sbjct: 378 QHAEAVLKALKLPFRRVSLCSGDIGFGARLCYDLEVWMPGQGAFREISSCSNCQDFQARR 437

Query: 235 ENTDFDD 241
            N  + +
Sbjct: 438 MNLRYRE 444


>gi|158423363|ref|YP_001524655.1| seryl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|172047946|sp|A8I4J4|SYS_AZOC5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|158330252|dbj|BAF87737.1| seryl-tRNA synthetase, class IIa [Azorhizobium caulinodans ORS 571]
          Length = 445

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 19/214 (8%)

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL----------ADRNDKAMI 105
            +     + G  E++ P L   +    + +   +  +   +           + + +   
Sbjct: 187 FLDMHVEQHGYTEVNPPLLVRDETMYGTAQLPKFFDDQFAVYAGSTQRAIGDETDAERYW 246

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I S   LP  F      FR E     R   G++R  +F   +  
Sbjct: 247 LIPTAEVPLTNLVRDSILSEDELPLRFTANTPCFRAEAGSAGRDTRGMIRQHQFTKVEMV 306

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
           S   TPE S+  +++M      +  +L L    +   +G +G         E  +     
Sbjct: 307 SI-TTPETSEEEHHRMLACAEAVLQKLDLHYRVVTLCTGDMGFASRKTFDIEVWLPGQNA 365

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             ++       DF     N  +            
Sbjct: 366 YREISSCSVCGDFQARRMNARYRPAEGKGPRFVH 399


>gi|258404151|ref|YP_003196893.1| histidyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796378|gb|ACV67315.1| histidyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 419

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 121/417 (29%), Gaps = 35/417 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG     P        +    RE  +R G  E+ VP L+  +L+  S     D   KEM 
Sbjct: 8   KGFNDLFPPVSAIYSRMEQTAREVFSRYGYYEIRVPLLEKTELFARSIGDETDVVQKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR  +++   P     +   +  + +         +     FR E RP+ G  R R+
Sbjct: 68  TFPDRKGRSLTLRPEATASVVRAYIENKRYASESVSRMFTFGPMFRYE-RPQKG--RQRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRI---------FHRLG-LKSIPMRAESGPIGG 204
           F   +          S      M   YL+           + LG  +  P   E+     
Sbjct: 125 FHQVNCELLGAEAPQSDAELILMLWEYLQALGLDGLHLDLNSLGCRECRPAYHET----- 179

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD-DIISLNSIVEQWTAPYAATSDVH 263
             S+   V AD         K      +     +    ++     +         +    
Sbjct: 180 LGSYLAGVDADELCDDCRRRKTTNPLRVLDCKVEGCRSVMQQAPRLADHLCSGCQSHFAS 239

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GSYGIGA 321
              + D       ++ R +        G  Y    +      +          G Y    
Sbjct: 240 VRTILDRAGIPYTINPRLVR-------GLDYYQRTTFEVVAENIGAQTAVAGGGRYDGLV 292

Query: 322 MRVVAAVIESSHDGKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +    +  +    G     ++  +   P       +   D   RD       +L K G
Sbjct: 293 SDLGGPALPGTGFACGMERLALLLQEQEQPGTPVDFFLAVLDDEARDEAILQAQQLRKQG 352

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                    +   S    A+  G    +++G + + +    +K+  +G +E +S EE
Sbjct: 353 LAGEVGYEAKSPKSHLRHANKAGAAYCLLLGGQELQEKAFVVKNMQSGAQETVSWEE 409


>gi|110834155|ref|YP_693014.1| seryl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|123345548|sp|Q0VQ06|SYS_ALCBS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|110647266|emb|CAL16742.1| seryl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 429

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 82/236 (34%), Gaps = 19/236 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-N 62
             L   P+D       L    G+  + +    G    +  G  A     +   + +   +
Sbjct: 134 KTLPFEPKDHVDIGEAL--EGGLDFERAAKLSGARFAVMSGGLARMHRALIDFMLDIHSD 191

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+ VP L   +    +G+   + +++ ++    ++ +   PT E  +T++    I
Sbjct: 192 EHGYQEVYVPFLVGPEALRGTGQLPKFAEDLFKI--EGERELYLIPTAEVPVTNLAADEI 249

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                +P  +      FR E     R   G++R  +F   +     + PE S  +   + 
Sbjct: 250 LEANTMPRRYTCHTPCFRSEAGSHGRDTRGMIRQHQFEKVELVQM-VRPEESDAALEALT 308

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
                I  +L L    +    G +G   S     E  + +     ++    +F D+
Sbjct: 309 GHAEAILQKLDLPYRVVILCGGDLGFSSSKTYDIEVWLPSQQCYREISSCSNFRDY 364


>gi|91200885|emb|CAJ73940.1| strongly similar to seryl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 439

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 74/228 (32%), Gaps = 20/228 (8%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G       G K    +   + +      G  E+  P L +      +G+      +M 
Sbjct: 160 GSGFILLKGAGAKLERALFNFMLDIHTRDHGYTEIFPPFLVNRKSMTGTGQLPKLEDDMY 219

Query: 95  RL-------ADRND---KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL- 143
           R        A       + +   PT E  +T+I R  I  Y+NLP  +      FR E  
Sbjct: 220 RTLQMYTAHASEKKAVAEDLFLVPTAEVPVTNIHRDEILLYKNLPIYYTAYTPCFRREAG 279

Query: 144 ---RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
              +   G+MR  +F   +     + PE S      +  +  +I   L L+   ++  +G
Sbjct: 280 SYGKDTRGIMRVHQFNKVELVKL-VRPETSYGELETLLANAEKILQLLELEYRVVKLCTG 338

Query: 201 PIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +    +     E          +V    +F DF     N  F D   
Sbjct: 339 DMSFAAAKCYDIEVWAPGVDKYLEVSSCSNFEDFQARRINLRFRDEDG 386


>gi|251789953|ref|YP_003004674.1| seryl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247538574|gb|ACT07195.1| seryl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 431

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 16/209 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G  E  VP L + +    +G+   +G+++
Sbjct: 159 TGARFSVMKGQVARLHRALAQFMLDLHTGEHGYQEAYVPYLVNHNTLYGTGQLPKFGEDL 218

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                 ++++        PT E  +T++ R  I     LP         FR E     R 
Sbjct: 219 FHTKPLSEESETSNYALIPTAEVPLTNLVRDEILDEDALPIKLTAHTPCFRSEAGSYGRD 278

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-- 203
             G++R  +F   +     + PE S  +  ++     ++   L L    +   SG +G  
Sbjct: 279 TRGLIRVHQFDKVEMVQI-VRPEESMQALEELTGHAEKVLQLLKLPYRKVLLCSGDMGFG 337

Query: 204 --GDLSHEFIVLADTGETQVFCSKDFMDF 230
                  E  + A     ++    +  DF
Sbjct: 338 SCKTYDLEVWLPAQNTYREISSCSNMWDF 366


>gi|68471585|ref|XP_720099.1| potential serine tRNA synthetase [Candida albicans SC5314]
 gi|20140251|sp|Q9HGT6|SYSC_CANAL RecName: Full=Seryl-tRNA synthetase, cytoplasmic; AltName:
           Full=Serine--tRNA ligase; Short=SerRS; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase
 gi|9931532|gb|AAG02209.1|AF290915_1 seryl-tRNA synthetase [Candida albicans]
 gi|46441951|gb|EAL01244.1| potential serine tRNA synthetase [Candida albicans SC5314]
 gi|238880695|gb|EEQ44333.1| seryl-tRNA synthetase [Candida albicans WO-1]
          Length = 462

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 75/208 (36%), Gaps = 12/208 (5%)

Query: 18  AEIASHKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A+++ H+++LR  G      +       Y     G      +        +  G + +  
Sbjct: 150 AKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQA 209

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPF 130
           P + + ++  ++ +   + +E+ ++ D  D+  +   + + +         +S    LP 
Sbjct: 210 PVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPV 269

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +  +G+ R   F   +       PE S   +++M       + 
Sbjct: 270 RYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPEKSWEEFDRMIGCSEEFYQ 328

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            LGL    +   SG +    + ++ + A
Sbjct: 329 SLGLPYRVVGIVSGELNNAAAKKYDLEA 356


>gi|238753493|ref|ZP_04614856.1| Seryl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238708446|gb|EEQ00801.1| Seryl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 431

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D ++  H  +     G+         G    +  GQ A     +   + +    + G +E
Sbjct: 133 DFDVRDHVSLGEMAAGLDFAAGVKLTGARFVVMKGQIARMHRALAQFMLDLHTEKHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L +      +G+   +G ++      ++++        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHATLYGTGQLPKFGGDLFHTKPLDEESASSNYALIPTAEVPVTNLVRDEILE 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 253 EESLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VRPEDSTEALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    M   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKMLLCTGDMGFGSRKTYDLEVWLPAQNTYREISSCSNMWDF 365


>gi|220927137|ref|YP_002502439.1| seryl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|254783036|sp|B8IN20|SYS_METNO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219951744|gb|ACL62136.1| seryl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 437

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 24  KLMLRTGMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L   TG++   +     G    +  G  A     +   + +      G  E++ P L  
Sbjct: 142 ELGEATGLMDFEAAAKLSGARFVVLKGHLARLERALGQFMLDLHTTEHGYTEVAPPLLVR 201

Query: 77  ADLWVESGRYDSYGKEML-----RLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            ++   + +   +  +        +            PT E  +T++ R  I S   LP 
Sbjct: 202 DEVMFGTAQLPKFRDDQFAAMPGSVEAEGGAPTRWLIPTAEVPLTNLVRESILSEDELPL 261

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            F  +   FR E     R   G++R  +F   +  S   TPE S   + +M  S   +  
Sbjct: 262 RFTALTPCFRAEAGAAGRDTRGMLRQHQFTKVELVSV-TTPEQSDEEHERMLASAEAVLK 320

Query: 187 RLGLKSIPMRAESGPIG 203
           +L L    +   +G +G
Sbjct: 321 KLDLPYRVVTLCTGDMG 337


>gi|257784208|ref|YP_003179425.1| histidyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472715|gb|ACV50834.1| histidyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 436

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/438 (13%), Positives = 123/438 (28%), Gaps = 61/438 (13%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV--ESGRYDSYGKEMLRLADRNDKAM 104
            ++ +++  + R      G   +  P L+  D +V       D   KEM R+        
Sbjct: 16  MRSWEHMQDVARHLFGTYGFDRIETPALEQVDTFVHGIGESTDVVRKEMFRVFSGALLDD 75

Query: 105 IYGPTHE-------------EVMTDIFRSHIKSYR----NLPFTFYQIQLKFRDELRPRF 147
           +    +E             E    + R+ ++         P   +  +  FR E RP+ 
Sbjct: 76  LLAAGNESGLKPRQRMAMRPEGTAGVVRAAVEHNFVPQGGTPAKLWYAEAMFRGE-RPQK 134

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD-- 205
           G  R R+F          +   +      M    ++ + ++G     M+     +G    
Sbjct: 135 G--RLRQFHQVGVEWLGASDPAADAESIIML---MKFYEQMGFSPANMKLMINSMGDAEC 189

Query: 206 ------------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                       L H+  +  D  E          D      +    D   ++  +    
Sbjct: 190 RPAYREKVKQFILDHKDQMCEDCLERAEINPLRAFDCKNEGCHAVMKDAPLISDNLCDDC 249

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY----------SLPMSATFK 303
             +      + +       E+     RG++      F  +                   +
Sbjct: 250 RTHYEQVKAYLDAAGILYIEDPT-LVRGLDYYTRTVFEVEIPNAGVGAIGGGGRYDGLVE 308

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              GK       + G      +   +E+         P        S + +         
Sbjct: 309 LEGGKPTPGVGFAVGF---ERIMLALEALGVSAEPAAP--------SCVYVACAGAEQAP 357

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                   L + G     D  G  + +QF  AD +G  L V++G   V    V ++   +
Sbjct: 358 VVFDAVLALREAGIRCEADRTGRSLKAQFKQADKMGAALCVVIGPDEVEAGVVTLRDMES 417

Query: 424 GIREDMSLEEVINYASHR 441
             +  +  ++++     R
Sbjct: 418 HEQVQVPSDQLVAEVKAR 435


>gi|164686346|ref|ZP_02210376.1| hypothetical protein CLOBAR_02784 [Clostridium bartlettii DSM
           16795]
 gi|164601948|gb|EDQ95413.1| hypothetical protein CLOBAR_02784 [Clostridium bartlettii DSM
           16795]
          Length = 424

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 70/175 (40%), Gaps = 10/175 (5%)

Query: 41  SWLPLGQKALDNVNAI-IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +   G +   ++    +       G  E   P + +A+ ++ +G+   + ++M ++   
Sbjct: 165 LYKDKGARLERSLYNFFLDTNTGVNGYTEFIPPFMANANSFLGTGQLPKFEEDMFKV--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            D      PT E  +T+I  + I  Y  LP  +      FR E     R   G++R  +F
Sbjct: 222 -DNGYYLIPTAEVPLTNIHANEILPYDALPLNYTAYTPCFRSEAGSAGRDTRGLVRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +       PE S +   K+  +   +  +LGL    +R  +G +G   + ++
Sbjct: 281 NKVEMVKICA-PEESYNELEKLTANAEYLLQQLGLPYRVVRICTGDLGFTAAFKY 334


>gi|163759446|ref|ZP_02166531.1| seryl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283043|gb|EDQ33329.1| seryl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 427

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 14/195 (7%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E++ P L +      + +   +G ++ R  D         PT
Sbjct: 176 RALGQFMLDLHTGEHGYTEVNPPLLVNDAAAYGTDKLPKFGDDLFRTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T +    I +   LP  +      FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLTYMAAGEILAEDELPKRYAAHTACFRSEAGSAGRDTRGMLRQHQFSKVELVSV-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
           TPE S   + +M  S   +  RLGL    +   +G +G         E  +       ++
Sbjct: 291 TPETSLEEHERMTASAEAVLTRLGLHFRTVVLCTGDMGFGAQKTYDIEVWLPGQNAYREI 350

Query: 222 FCSKDFMDFPIPSEN 236
                  DF     N
Sbjct: 351 SSCSVCGDFQARRMN 365


>gi|78066581|ref|YP_369350.1| histidyl-tRNA synthetase [Burkholderia sp. 383]
 gi|123742580|sp|Q39FR0|SYH_BURS3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|77967326|gb|ABB08706.1| histidyl-tRNA synthetase [Burkholderia sp. 383]
          Length = 446

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 139/442 (31%), Gaps = 59/442 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRASIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F      +       +      M     R++  LGL  I +          RA      
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLEINSLGLAEERAAHRVEL 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F  + D  E             + ++N    +I      +  +    +      
Sbjct: 188 IKYLEQFADVLD--EDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFEG 245

Query: 264 NEKLFDSLPENKR---VSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDHY 311
            ++L  +     +      RG++     +F       G + ++     +           
Sbjct: 246 LQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKP 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDACEKIY 369
                + +G  R    ++E   +         +AP +  + +  +    +  R+      
Sbjct: 306 TAACGWAMGIER----ILELLKEDD-------LAPEQEGVDVYVVHQG-ETAREQAFIAA 353

Query: 370 ARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
            RL   G DV +    D       SQ   AD  G    VI G + V++  V +K  R  G
Sbjct: 354 ERLRDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAG 413

Query: 425 ------IREDMSLEEVINYASH 440
                 +++ + +E +  +  +
Sbjct: 414 GDGEKNVQQTVPVEGLTEFLIN 435


>gi|299537316|ref|ZP_07050616.1| seryl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727207|gb|EFI67782.1| seryl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 428

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  EM  P + + D    +G    + +++ +L   
Sbjct: 165 FYRGLGARLERALMTFMMDLHAEEHGYEEMLPPIIVNRDSLTGTGNLPKFEEDLFKL--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F
Sbjct: 222 EETDYFMIPTAEVPVTNFYRDEILLAEALPQGFASYSPCFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
              +   F + PE S      +     ++   LGL    ++  +  +G         E  
Sbjct: 282 NKVELVRF-VKPEDSYEQLELLTGHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEVW 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +F DF     N  F
Sbjct: 341 IPAQNMYREISSCSNFEDFQARRANIRF 368


>gi|150006127|ref|YP_001300871.1| seryl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254883514|ref|ZP_05256224.1| seryl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294775307|ref|ZP_06740830.1| serine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|319641697|ref|ZP_07996380.1| seryl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|149934551|gb|ABR41249.1| seryl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254836307|gb|EET16616.1| seryl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294450884|gb|EFG19361.1| serine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|317386671|gb|EFV67567.1| seryl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 424

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 104/316 (32%), Gaps = 66/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E   +G  E+  PT+ +      +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINFFLDEARASGYEEIMPPTVVNTASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 281 LHEFSKVELVRID-KPEHSKQSHQEMLDHVEGLLKKLELPYRILRLC----GGDMSFTAA 335

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +  D    +V+         + S +    D    N +  ++ +    T   H        
Sbjct: 336 LCFDF---EVYSEAQQRWLEVSSVSN--FDTYQANRLKCRYRSAEKKTELCHTLN----- 385

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                              G+  +LP                         R+VAA++E+
Sbjct: 386 -------------------GSALALP-------------------------RIVAALLEN 401

Query: 332 SHDGKGIIWPDSVAPF 347
           +   +GI  P ++ P+
Sbjct: 402 NQTPEGIRIPKALVPY 417


>gi|145636363|ref|ZP_01792032.1| histidyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145270528|gb|EDK10462.1| histidyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 423

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 146/429 (34%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++    +     + +  
Sbjct: 187 HQDLMNDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRTHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGATLAAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +            QF  AD  G  L +++G   V + +V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVN 414

Query: 434 VINYASHRF 442
           +I+Y   +F
Sbjct: 415 IIDYLQTQF 423


>gi|302545522|ref|ZP_07297864.1| glycine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463140|gb|EFL26233.1| glycine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 460

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 68/450 (15%), Positives = 145/450 (32%), Gaps = 72/450 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++W  SG   ++      L 
Sbjct: 33  WDYGPLGVELKENIKRQWWRSMVTSRDDVVGLDSSVILAREVWEASGHVATFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT-FYQIQLKFRD------ELRPRFGVM 150
           +       +   H E   +        +  LP      +            E +   G++
Sbjct: 90  ECTSCHKRFRADHLEEAYE------AKHGKLPENGMADLNCPHCGNKGSFTEPKQFSGLL 143

Query: 151 RSR-EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LGLKSIPMRAESGPIGGDL 206
            +             L PE ++  +   F++  +   R    G+  +         G   
Sbjct: 144 STHLGPTQDSGSVAYLRPETAQGIFTN-FLAVQQTSRRKPPFGIAQL---------GKSF 193

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E         T+ F   +   F  P E+  + +                 ++    E 
Sbjct: 194 RNEITPGNFIFRTREFEQMEMEFFVKPGEDEQWHEYWMEQRYNWYRDLGIQESNIRWFEH 253

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD------- 306
             +   +    S R  ++ + F FG             T Y L   +   G D       
Sbjct: 254 PKE---KLSHYSKRTADIEYRFSFGGSEWGELEGVANRTDYDLKAHSAASGQDLSYFDQE 310

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLI 352
            G+     +     G  R + A +  ++                 +     +AP K++++
Sbjct: 311 AGERWTPYVIEPAAGVGRAMLAFMLDAYIEDEAPNAKGKLEKRTVMQLDPRLAPVKVAVL 370

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +  + Q      + + A L K   ++ +DD G  IG ++   D +G P  V V    + 
Sbjct: 371 PLSRNPQ-LSPKAKGLAADLRKHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLD 427

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D+ V ++ R T  +E +SL+++ +Y   R 
Sbjct: 428 DNAVTVRERDTMKQERVSLDQIQSYLGGRL 457


>gi|145638722|ref|ZP_01794331.1| histidyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145272317|gb|EDK12225.1| histidyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309750212|gb|ADO80196.1| Histidyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 423

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 148/429 (34%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++  A +     + +  
Sbjct: 187 HQDLMNDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNIPVKSA---VDIYVVYQGEGATLAAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVN 414

Query: 434 VINYASHRF 442
           +I+Y   +F
Sbjct: 415 IIDYLQTQF 423


>gi|228915931|ref|ZP_04079506.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843749|gb|EEM88823.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 426

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/450 (16%), Positives = 144/450 (32%), Gaps = 79/450 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LQDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMSMAF-ELFQTLNLELTIQYNNRKLLNGILQAINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLERGISKEMADTICNTVLSCLKLTIADFKEAFNNPL 238

Query: 267 LFDSLPENKRVSARGIEV--------------GHIFYFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +              G   Y GT Y + +  +   +       
Sbjct: 239 VADGVNELQQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDSLITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  +     +   + +I + 
Sbjct: 299 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALAQKETV----SSTADVFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 348 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 396

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + +S + V +++   G    + +  + NY 
Sbjct: 397 EELSTNTVMLRNMKEGSEVKVPISSLSNYL 426


>gi|52549236|gb|AAU83085.1| glycyl-tRNA synthetase [uncultured archaeon GZfos26E7]
          Length = 593

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 10/153 (6%)

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG--------KGIIWPDSVAPFKIS 350
               +   G+     +     G  R++ A +E S             +  P  VAP +++
Sbjct: 432 ETVIEDVRGERVIPHVIEPSFGIDRIIYAALEHSFSEEPVEGETRNVLHLPAEVAPVQVA 491

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +   +++       I   L + G  V +DD G  IG ++   D +G P  + +  + 
Sbjct: 492 VLPLLTREELITP-SLAIVKTLRENGVFVSYDDSG-TIGRRYRRNDEIGTPFSITIDYET 549

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + D  V I+ R +  +  + + E+         
Sbjct: 550 LDDDTVTIRDRDSMAQIRVPVGELAETIRAMIR 582



 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 66/213 (30%), Gaps = 64/213 (30%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML- 94
            G Y + PLG      +  I R+      G  E+  PT+  A ++  SG    +   M+ 
Sbjct: 37  AGFYDYGPLGAMLKRRIEDIWRKMYVIEEGFYEIETPTIGIAAIFDASGHTRGFSDPMVV 96

Query: 95  ------------------------------RLADRNDKAM-------------------- 104
                                         RL D +                        
Sbjct: 97  CSGCDHAFRADHLIEGIVETPDALPASEIKRLIDEHGIECPQCGGVGTFGDVSSFNLMFK 156

Query: 105 -----------IYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRS 152
                         P   + M   F    + YR  LPF   QI   +R+E+ PR GV+R 
Sbjct: 157 TTIGPGAERVGYLRPETAQGMFVDFEHLFRFYREKLPFGVTQIGKAYRNEISPRQGVIRL 216

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           REF   +A  F    + +   ++ +  + LR +
Sbjct: 217 REFTQAEAEIFINPTDKNHPRFSMIEDTVLRYY 249


>gi|282860361|ref|ZP_06269429.1| glycine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282586859|gb|EFB92096.1| glycine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 517

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 111/367 (30%), Gaps = 78/367 (21%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD + K  +   T + +  +           LPF   QI   FR+E+  R  V R
Sbjct: 201 EMGSTADGSQKIYLRPETAQGIFVNFLNVQKTGRMKLPFGIAQIGKAFRNEIVARQFVFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE                              F ++ ++                    
Sbjct: 261 MRE------------------------------FEQMEMQFFCQP--------------- 275

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                       ++        +    + + + +     ++          +     +  
Sbjct: 276 -----------GTEMKWFEYWKAHRLAWHEGLGMGDDNYRFHDHDKLAHYANAATDIEFH 324

Query: 272 PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAV 328
                    GI     F  G   K+S      +   D  +++   +    IG  R+   V
Sbjct: 325 LPFGFKEIEGIHSRTDFDLGQHEKFS-GRQIKYFDPDRNENYTPYVVETSIGVDRMFLTV 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---G 376
           +  ++  + +           P+ +AP K +++ +   D    +  ++I   L       
Sbjct: 384 MCHAYQEEQLENGSSRVVLKLPEPLAPIKCAVLPLVNKD-GLPEKAQEIVNDLKFHFTTH 442

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +       + IG ++   D +G P  V V    ++D  V +++R T  +E + ++++  
Sbjct: 443 IEAK-----DSIGKRYRRQDAIGTPFCVTVDGDTLTDGTVTLRYRDTMEQERVPIDKLRE 497

Query: 437 YASHRFS 443
               R S
Sbjct: 498 IIEDRVS 504


>gi|149245668|ref|XP_001527311.1| seryl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449705|gb|EDK43961.1| seryl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 461

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 81/245 (33%), Gaps = 20/245 (8%)

Query: 18  AEIASHKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A ++ H+++LR  G      +       Y    +G      +        +  G   +  
Sbjct: 150 ASLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNVGVWLNQALINYGLSFLHSKGYTPLQA 209

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPF 130
           P + + ++  ++ +   + +E+ ++ D  D+  +   + + +         +S +  LP 
Sbjct: 210 PVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPQEQLPI 269

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +  +G+ R   F   +       P+ S   +++M  +    + 
Sbjct: 270 RYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPDKSWEEFDRMIGASEDFYQ 328

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LGL    +        G +S E    A              ++      ++  D  S N
Sbjct: 329 SLGLPYRVV--------GIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRN 380

Query: 247 SIVEQ 251
             +  
Sbjct: 381 LEIRC 385


>gi|161712041|ref|YP_304102.2| seryl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|146325743|sp|Q46F20|SYS_METBF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 423

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 71/222 (31%), Gaps = 15/222 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G   +  +G K    +   + E   R G +E+  P L +      +G+   +  +M  
Sbjct: 160 GQGFTVYKGMGAKLERALVNFMLEVHARQGYLEVFPPVLINEKAMTGTGQLPKFKDDMYL 219

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMR 151
             D         PT E  +T++F         LP         FR E         G++R
Sbjct: 220 CTD----GYYLAPTAEVPVTNLFMDDYIE--KLPVFLTAYTACFRREAGKHGQDTRGIIR 273

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   +   F + PE S     K+      I   L L    +   +G IG   +    
Sbjct: 274 QHQFNKVELVKF-VKPETSYDELEKLTNDAEEILKLLKLPYRVVNLCTGDIGFSAAKTYD 332

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            E  V       ++    +F +F     N  F        + 
Sbjct: 333 LEVWVPTQEKYREISSCSNFENFQARRANIRFRTPDGPQFVH 374


>gi|146298609|ref|YP_001193200.1| seryl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|146153027|gb|ABQ03881.1| seryl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 423

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 97/317 (30%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     ++    G  E+ VP L +      +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALINYFLDKNTAAGYNEVQVPHLVNEASGYGTGQLPDKEGQMY- 221

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T++FR  I +   LP         FR E         G+ R
Sbjct: 222 --HAGVDDLYLIPTAEVPVTNLFRDVILNESELPILHTAYTPCFRREAGSYGAHVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    +  P+ S  + + M      I   L L    +R   G +G        
Sbjct: 280 LHQFDKVEIVRVEH-PDNSYAALDGMVEHVKNILQELKLPYRILRLCGGDMG-------- 330

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S   D                                 
Sbjct: 331 ----------FTSALTYDFEVFSTAQDRW------------------------------- 349

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                     +E+  +  F T  +  +   FK  DGK+     +    +   RV+A ++E
Sbjct: 350 ----------LEISSVSNFETFQANRLKLRFKDKDGKNQLAHTLNGSSLALPRVLAGILE 399

Query: 331 SSHDGKGIIWPDSVAPF 347
           +    +GI+ P+ + P+
Sbjct: 400 NYQTPEGIVIPEVLRPY 416


>gi|317126756|ref|YP_004093038.1| seryl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315471704|gb|ADU28307.1| seryl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 425

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + + D    +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALINFMMDLHQDEHGYEEILPPYMVNRDSMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I     LP  +      FR E     R   G++R  
Sbjct: 222 --REEEYFLIPTAEVPVTNLHRDEIMQAEELPKAYTAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHE 209
           +F   +   F + PE S     ++     ++   L L    +   +G +G         E
Sbjct: 280 QFNKVELVRF-VKPEESYEQLEQLTSQAEKVLQLLKLPYRVLNMCTGDLGFTAAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + ++    ++    +F  F     N  F
Sbjct: 339 VWIPSNNAYREISSCSNFEAFQARRANIRF 368


>gi|242280836|ref|YP_002992965.1| seryl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259511664|sp|C6BS43|SYS_DESAD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|242123730|gb|ACS81426.1| seryl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 425

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 13/216 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    + + + + Q    G  E+  P + + D    +G+   + +++ +L    +  
Sbjct: 168 WGARLERALTSFMVDVQTMDHGYTEVIPPYIVNRDSLFGTGQLPKFEEDLFKLK---NWE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  + S  +L   +      FR E     +   G++R  +F   +
Sbjct: 225 YYMIPTAEVPLTNLHRDEVLSEDDLSIAYCAPTPCFRSEAGSYGKDTKGLIRQHQFHKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F   P+ S     KM      I  RLGL    +   +G +G   +     E  +   
Sbjct: 285 MVRF-AHPDKSFEDLEKMTGHAEEILKRLGLHYRVITLCTGDMGFGSAKTYDIEVWLPGQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               ++    + +DF     N  F    S       
Sbjct: 344 DKYREISSCSNCVDFQARRANIKFQPKDSKKKQFVH 379


>gi|108800411|ref|YP_640608.1| glycyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119869540|ref|YP_939492.1| glycyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|108770830|gb|ABG09552.1| glycyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119695629|gb|ABL92702.1| glycyl-tRNA synthetase [Mycobacterium sp. KMS]
          Length = 468

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/463 (17%), Positives = 152/463 (32%), Gaps = 60/463 (12%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVE 82
           L+ ++G I+  +K  + + PLG +  +N+           R   + +    +    +WV 
Sbjct: 20  LVYQSGEIYGGTKSAWDYGPLGVELKENIKRQWWRSVVTGRDDVVGLDSAIILPRQVWVA 79

Query: 83  SGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           SG  + +     E L    R+ +  +     E       +   K     P +    ++  
Sbjct: 80  SGHVEVFNDPLVECLNCHKRHRQDHLQEAYFE-------KKGAKDGLAGPDSVPMDEIVC 132

Query: 140 RDE-LRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIP 194
            D   + ++   R    ++K       T EG       +   +FV++  +          
Sbjct: 133 PDCGTKGQWTEPRDFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANVVTT---ARKK 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                G IG    +E         T+ F   +   F  PS   ++        +      
Sbjct: 190 PPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPSTAKEWHQYWIDTRLQWYVDL 249

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT 301
                +    E   D   +    S R +++ + F F              T + L   A 
Sbjct: 250 GIDRDNLRLYEHPKD---KLSHYSDRTVDIEYKFGFAGNPWGELEGVANRTDFDLSTHAK 306

Query: 302 FKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIW 340
             GAD           +   +     G  R + A +  S+                 +  
Sbjct: 307 HSGADLSFYDQATETRYTPYVIEPAAGLTRSLMAFLVDSYTEDEAPNAKGGVDKRTVLRL 366

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP K +++ +  H          + A L K   +V +DD G  IG ++   D +G 
Sbjct: 367 DPRLAPVKAAVLPLSRH-ADLSPKARDLAAELRK-NWNVEFDDAGA-IGRRYRRQDEIGT 423

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P  + V    ++D  V I+ R T  ++ ++L EV +Y + R  
Sbjct: 424 PYCITVDFDSLTDHAVTIRERDTMTQDRVALSEVSDYLALRLK 466


>gi|56708386|ref|YP_170282.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670857|ref|YP_667414.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134302372|ref|YP_001122341.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187931980|ref|YP_001891965.1| seryl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457515|ref|ZP_03665988.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371010|ref|ZP_04987013.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875208|ref|ZP_05247918.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|67461645|sp|Q5NFB0|SYS_FRATT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122970886|sp|Q14GR3|SYS_FRAT1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166222727|sp|A4IZ69|SYS_FRATW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238691511|sp|B2SDH2|SYS_FRATM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56604878|emb|CAG45963.1| Seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321190|emb|CAL09346.1| Seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134050149|gb|ABO47220.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569251|gb|EDN34905.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187712889|gb|ACD31186.1| seryl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254841207|gb|EET19643.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282160006|gb|ADA79397.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 426

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D  
Sbjct: 170 KIAKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKL--EGDFE 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 228 YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 T +  + S   +     ++  +L L    M+  +G +G         E  + + 
Sbjct: 288 LVHI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 347 NTYREISSCSWCGDF 361


>gi|282852800|ref|ZP_06262141.1| serine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|282555908|gb|EFB61529.1| serine--tRNA ligase [Lactobacillus gasseri 224-1]
          Length = 436

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V+    +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVSNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFTEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE----LRPRFGVM 150
            +D    + +   PT E  + + FR  I   + LP         FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRGKILDAKQLPINVTAFSPAFRSESGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     +  + S     K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKI-VDEDSSWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRSLIRYRDENGKLHLAH 385


>gi|258544668|ref|ZP_05704902.1| serine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258520086|gb|EEV88945.1| serine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 426

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 11/214 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  EM VP L +A     +G+   + +++ + A   ++   
Sbjct: 168 ARLHRAIAQFMLDTHTRDEGYTEMYVPYLANAQALFGTGQLPKFEEDLFKTA-LGERHFY 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    +    +LP  +      FR E     R   G++R  +F   +  
Sbjct: 227 LIPTSEVSLTNLVADSVLEEADLPLYYTAHTPCFRSEAGSHGRDVRGMIRQHQFDKVEMV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S     K+  +   I  +L L    +   +G +G   +     E  +     
Sbjct: 287 KIVA-PETSYDELEKLTANAENILQKLNLPYRVVLLCTGDMGFSAAKTYDLEVWLPGQGK 345

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             ++    +  DF        +    S       
Sbjct: 346 YREISSCSNCTDFQARRMQARYRPKDSKKPQPVH 379


>gi|308190318|ref|YP_003923249.1| seryl-tRNA synthetase [Mycoplasma fermentans JER]
 gi|319777714|ref|YP_004137365.1| seryl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|238810224|dbj|BAH70014.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307625060|gb|ADN69365.1| seryl-tRNA synthetase [Mycoplasma fermentans JER]
 gi|318038789|gb|ADV34988.1| Seryl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 423

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 75/223 (33%), Gaps = 13/223 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG +    +   + +   + G  E SVP +   ++   +G+   + +++  L D
Sbjct: 164 FVIYKGLGARLARAIMNFMLDLHTKNGYEEYSVPVIVKPEILFGTGQLPKFKEDLFALED 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                    PT E  +T+ + + I      P         FR E     +   G++R+ +
Sbjct: 224 ---AQSYLIPTAEVPLTNYYNNEIIDLSK-PIRMTAFTECFRSEAGSSGKDTRGIIRNHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEF 210
           F   +     ++ +  +  +N+M      +   L +    +   +G +G      +  E 
Sbjct: 280 FKKVELVKI-VSEKDWEAEFNQMLEQAKSVLEELEIPYRELLLCTGDLGFSSRKTIDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            + ++    ++       DF        + +    N       
Sbjct: 339 WLPSEIKYREISSVSYMGDFQARRAMIRYKNENGENVYAHTMN 381


>gi|163752526|ref|ZP_02159712.1| seryl-tRNA synthetase [Shewanella benthica KT99]
 gi|161327581|gb|EDP98779.1| seryl-tRNA synthetase [Shewanella benthica KT99]
          Length = 428

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 19/230 (8%)

Query: 19  EIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMS 70
           E+  H  +     G+  + +    G    +  GQ A     +   + +   +  G  E+ 
Sbjct: 135 EVKDHVDLGEALGGLDFKSAVKITGSRFIIMKGQIARMHRALAQFMLDLHTDEHGYTEVY 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           VP L + D  + + +   +G+++          + +   PT E  +T++ R  I     L
Sbjct: 195 VPLLVNEDSLLGTSQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNMARDTIIDEDEL 254

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   G++R  +F   +     + PE S  + + +      +
Sbjct: 255 PVKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL-VKPEDSMAALDALTGHAETV 313

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             +L L    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 314 LQKLALPYRTVILCTGDMGFGASKTYDIEVWLPAQDTYREISSCSNMQDF 363


>gi|68248972|ref|YP_248084.1| histidyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81336616|sp|Q4QNH3|SYH_HAEI8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|68057171|gb|AAX87424.1| histidyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 423

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 149/429 (34%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++  A +     + +  
Sbjct: 187 HQDLMSDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +    V  +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNVPTKSA---VDIYVVYQGEGATLVAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVN 414

Query: 434 VINYASHRF 442
           +I+Y   +F
Sbjct: 415 IIDYLQTQF 423


>gi|332637146|ref|ZP_08416009.1| seryl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 427

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G +    V   + +E  + G  EM  P +        +G+Y  + ++  R+  
Sbjct: 163 FVYYVGQGARLERAVYNFMLDEHQKEGYKEMITPYMVKDAAMFGTGQYPKFMEDAYRVGT 222

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             ++ M   PT E  +T+ FR  +     LP++   +   FR E     R   G++R  +
Sbjct: 223 --NEDMTLIPTAEVPLTNYFREEVIDADKLPYSVTAVSPSFRQEAGSAGRDTRGLIRMHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           F   +   F   PE S  +   M  +   I  +L L    +   +G +G   +  +
Sbjct: 281 FNKVEMVKF-TKPEQSYQALEDMTANAENILQKLNLPYHVITLSTGDMGFSAAKTY 335


>gi|227495966|ref|ZP_03926277.1| glycine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834454|gb|EEH66837.1| glycine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 469

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 68/452 (15%), Positives = 146/452 (32%), Gaps = 74/452 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +   R+    + +    +   + WV SG   ++   ++   
Sbjct: 40  WDYGPLGVELKENIKRQWWQYMVRSRDDVVGLDSSVILPRETWVASGHVKAFTDPLIECT 99

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD------ELRPRFGVMR 151
             + +        E+ + + + +          +  Q+            E R   G+++
Sbjct: 100 SCHKR------LREDELQEAYAAKHGIEDPDSVSLDQLVCPNCGTRGQFTEPRAFSGLLK 153

Query: 152 SREFLM---KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDL 206
           +  FL     +A    L PE ++  +            +   G+         G +G   
Sbjct: 154 T--FLGPVDDEAGLHYLRPETAQGIFINFANVMSAARKKPPFGI---------GQVGKSF 202

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E         T+ F   +   F  P  + ++              A Y       +  
Sbjct: 203 RNEITPGNFIFRTREFEQMELEFFCEPGTDEEWHQYWIDYR-----KAWYTGLGIKEDNL 257

Query: 267 LFDSLPENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD----- 306
                P  K    S R +++ + F F              T + L   A   G D     
Sbjct: 258 RLYEHPAEKLSHYSKRTVDLEYRFGFQGSEWGELEGIANRTDFDLSTHAEHSGKDLSYFD 317

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKIS 350
               +     +     G  R + A +  ++                 +     +AP K +
Sbjct: 318 QTKNERWTPYVIEPSAGLTRSLMAFLVEAYTEDEAPNTKGGVDTRVLLKLDPRLAPVKAA 377

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +   +++     +++ ARL +   +V +DD G  +G ++   D +G P  +      
Sbjct: 378 VLPLSRKEELTGP-AKELAARLRRTW-NVDYDDAGA-VGRRYRRQDEIGTPFCITYDFDS 434

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             D  V ++ R T  +E + LE V  Y + R 
Sbjct: 435 PQDGAVTVRERDTMAQERIPLEGVERYLAERL 466


>gi|108757304|ref|YP_630179.1| seryl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|122981222|sp|Q1DAZ4|SYS_MYXXD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|108461184|gb|ABF86369.1| seryl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 426

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 65/190 (34%), Gaps = 13/190 (6%)

Query: 24  KLMLRTGM--IHQHSK--GIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSA 77
           +L  + GM    + +K  G       G  A     +   + +     G  E+  P L   
Sbjct: 142 ELGEKLGMLDFERAAKVSGSRFTFYKGALARLERALVTFMIDVHTSKGYTELLPPYLVLR 201

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +  + +G+   +  +  +     ++     PT E  +T+     I    +LP  +     
Sbjct: 202 ETMMGTGQLPKFEDDAFKTLGEPER--FLIPTAEVPVTNYHADEILEGESLPIRYCAFSP 259

Query: 138 KFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            FR E     +   G++R  +F   +   F    E S      M      I  RLG+   
Sbjct: 260 SFRAEAGAAGKDTRGLIRQHQFHKVELVKF-AHQEKSLDELEAMTDDACDILRRLGIHHR 318

Query: 194 PMRAESGPIG 203
            M   +G +G
Sbjct: 319 VMLLCTGDMG 328


>gi|297198348|ref|ZP_06915745.1| histidyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197714402|gb|EDY58436.1| histidyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 420

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 138/434 (31%), Gaps = 42/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            Q  KG Y  +P        V   I      +G   +  P  +S +L+        D   
Sbjct: 4   FQAPKGTYDLIPPDSAKFLAVREAIAAPLRTSGYGYIETPGFESVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDKLALRPEG-TASVLRAALEANLHKLGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL++  +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLRNFRILLNSLGDKECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E  +  ++      +  +       +    ++  +          
Sbjct: 177 YRAALQDFLRGLDLDEDTLRRAEINPLRVLDDKRESVQKQLGDAPLLRDYLCDACKAYHE 236

Query: 263 HNEKLFDSLPENKRVSA---RGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKD 309
              +L  +            RG++      F       G++ ++     + G     G  
Sbjct: 237 EVRELITAAGVAFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G + +G  R V A+     +G  +  P + A F + L       +  R       
Sbjct: 297 ALPSVG-WALGVDRTVLAL---EAEGVELELPSTTAVFAVPL------GEEARRVLFAKV 346

Query: 370 ARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L KVG    +   G+ + G+    A+  G    V+ G + +++  V++K   +G +  
Sbjct: 347 TELRKVGIAADFAYGGKGLKGAM-KNANRSGARYTVVAGERDLAEGVVQLKDMESGEQSA 405

Query: 429 MSLEEVINYASHRF 442
           + + E++     R 
Sbjct: 406 IGVNEIVAELESRL 419


>gi|171692755|ref|XP_001911302.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946326|emb|CAP73127.1| unnamed protein product [Podospora anserina S mat+]
          Length = 450

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
           Y     G      +     E  ++   I +  P L   +   ++ +   + +E+ ++   
Sbjct: 170 YFLKKWGLFLNQAIINYGLEFLDQKDYIALGTPMLMLKEQMAKTAQLSQFDEELYKVTG- 228

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +        T E+ ++          ++LP  +      FR E     R  +G+ R  EF
Sbjct: 229 DQADKYLIATSEQPISAFHSDEWLQSKDLPLKYAGYSTCFRKEAGAHGRDVWGIFRVHEF 288

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
              +       PE S   +++M  +    +  LG+    +   SG +    S +  + A
Sbjct: 289 TKVE-QFCLTDPEKSWEMFDQMIANSEEFYKSLGIPYRVVAIVSGALNNAASKKLDLEA 346


>gi|72395249|gb|AAZ69522.1| seryl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 450

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 71/222 (31%), Gaps = 15/222 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G   +  +G K    +   + E   R G +E+  P L +      +G+   +  +M  
Sbjct: 187 GQGFTVYKGMGAKLERALVNFMLEVHARQGYLEVFPPVLINEKAMTGTGQLPKFKDDMYL 246

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMR 151
             D         PT E  +T++F         LP         FR E         G++R
Sbjct: 247 CTD----GYYLAPTAEVPVTNLFMDDYIE--KLPVFLTAYTACFRREAGKHGQDTRGIIR 300

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   +   F + PE S     K+      I   L L    +   +G IG   +    
Sbjct: 301 QHQFNKVELVKF-VKPETSYDELEKLTNDAEEILKLLKLPYRVVNLCTGDIGFSAAKTYD 359

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            E  V       ++    +F +F     N  F        + 
Sbjct: 360 LEVWVPTQEKYREISSCSNFENFQARRANIRFRTPDGPQFVH 401


>gi|255693386|ref|ZP_05417061.1| serine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260620864|gb|EEX43735.1| serine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 424

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 15/203 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 EEKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPI 202
               +  +L L    +R   G +
Sbjct: 308 HVEGLLQKLELPYRILRLCGGDM 330


>gi|269797577|ref|YP_003311477.1| seryl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094206|gb|ACZ24197.1| seryl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 426

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +       
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHV---EGTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGGEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S      +  +   +   L L    +   +G +G   +     E  + A 
Sbjct: 285 MVKL-AKPEDSFKELETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|218548415|ref|YP_002382206.1| seryl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226701416|sp|B7LN61|SYS_ESCF3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218355956|emb|CAQ88572.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Escherichia fergusonii ATCC 35469]
 gi|324113810|gb|EGC07785.1| seryl-tRNA synthetase [Escherichia fergusonii B253]
 gi|325496838|gb|EGC94697.1| seryl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 430

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALAQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|157691302|ref|YP_001485764.1| seryl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|166987310|sp|A8FAD7|SYS_BACP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157680060|gb|ABV61204.1| serine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 424

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 13/222 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEFGFTEVLPPYMVNRASMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I     LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNMHRDEIIEGEQLPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHE 209
           +F   +   F + PE S     K+     ++   L L    M   +G +G         E
Sbjct: 280 QFNKVELVKF-VRPEDSYEELEKLTNQAEKVLQLLNLPYRVMSMCTGDLGFTAAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
             + +     ++    +F  F     N  F            
Sbjct: 339 VWIPSQDTYREISSCSNFEAFQARRANIRFRPEPKAKPEHVH 380


>gi|294056084|ref|YP_003549742.1| seryl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293615417|gb|ADE55572.1| seryl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 423

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 92/311 (29%), Gaps = 68/311 (21%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +     G   ++    + +  +     +E    G  E+  P + +A+    +G+      
Sbjct: 155 VKATGAGFPFYVGEMSRLVRALVNFFLQEAQENGYEEVLPPIVVNAESATATGQLPDKEG 214

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRF 147
           +M       ++ +   PT E  +T+ +R  I     LP         FR E         
Sbjct: 215 QMY---VDENEGLYLIPTAEVPVTNFYRDEILEADQLPIYRCAYTPCFRREAGSWGAHVR 271

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R  +F   +   +    E S     K+  +      +LGL    +R  +G IG    
Sbjct: 272 GLNRLHQFDKVELVKW-TDAETSMDELEKLRENVEGTLQKLGLPYRVLRMCTGDIG---- 326

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                 A   + +VF +       + S +                               
Sbjct: 327 ---FPHAKQYDLEVFAAGQKRWLEVSSCSNF----------------------------- 354

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVA 326
                               F      +      ++G DGK      +   G+   RV+A
Sbjct: 355 ------------------TDFQ-----ARRAGIRYRGEDGKPVTAHTLNGSGLAVPRVLA 391

Query: 327 AVIESSHDGKG 337
           A++E++    G
Sbjct: 392 AILENNLQADG 402


>gi|302561717|ref|ZP_07314059.1| histidyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302479335|gb|EFL42428.1| histidyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 420

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 136/434 (31%), Gaps = 42/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  +P        V   I      +G   +  P  ++ +L+        D   
Sbjct: 4   FKAPKGTYDLIPPDSAKYLAVREAIAAPLRGSGYGYIETPGFENVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDRLALRPEG-TASVLRAALEANLHKAGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL++  +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLQNFRILLNSLGDKECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E  +  ++      +  +       ++   ++  +          
Sbjct: 177 YRSALQDFLRGLDLDEDTLRRAEINPLRVLDDKREAVQKQLTGAPLLRDYLCDACKAYHE 236

Query: 263 HNEKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKGAD---GK 308
              +L  +         R             E  H    G++ ++     + G     G 
Sbjct: 237 EVRELITAAGVVFEDDPRLVRGLDYYTRTTFEFVHDG-LGSQSAVGGGGRYDGLSEMIGG 295

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +G + +G  R V A+     +G  +  P + + F + L       +  R      
Sbjct: 296 PALPSVG-WALGVDRTVLAL---EAEGVQLELPATTSVFAVPL------GEEARRVLFAK 345

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K G    +   G+ + +    A+  G    +++G + +++  V++K   +G +  
Sbjct: 346 VTELRKNGVAADFAYGGKGLKAAMKAANRSGARYALVLGERDLAEGVVQLKDMESGEQTA 405

Query: 429 MSLEEVINYASHRF 442
           + + E++     R 
Sbjct: 406 VGVNEIVAELESRL 419


>gi|254374079|ref|ZP_04989561.1| seryl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151571799|gb|EDN37453.1| seryl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 426

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D  
Sbjct: 170 KIAKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKL--EGDFE 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 228 YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 T +  + S   +     ++  +L L    M+  +G +G         E  + + 
Sbjct: 288 LVHI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 347 NTYREISSCSWCGDF 361


>gi|119510137|ref|ZP_01629276.1| tRNA synthetase, class II (G, H, P and S) [Nodularia spumigena
           CCY9414]
 gi|119465198|gb|EAW46096.1| tRNA synthetase, class II (G, H, P and S) [Nodularia spumigena
           CCY9414]
          Length = 455

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+S P L + D    +G+   + +E  + AD     + 
Sbjct: 204 GAALERALIQFMLKTQTEAGYVEVSPPLLVNTDALTGTGQLPKFAEESFKCAD---DELW 260

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +   LP         FR E     R   G++R  +F   +  
Sbjct: 261 LIPTAEVPVTNLYRGEILAAEELPIYHCAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 320

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S     K+ V+   I   L L    +   +  +G   +     E  + +   
Sbjct: 321 KV-VHPSSSFEELEKLVVNAEAILQALKLPYRVINLCTADLGFGATKTYDLEVWLPSSGK 379

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    + +DF     +  F +
Sbjct: 380 YREISSCSNCVDFQARRADIRFKE 403


>gi|95928408|ref|ZP_01311156.1| seryl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95135679|gb|EAT17330.1| seryl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 424

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 9/173 (5%)

Query: 46  GQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +        +EM  P + + D    +G+   + +++  +        
Sbjct: 168 GARLERALINFMLDLHTEQHKYVEMLPPFMVNRDSMTGTGQLPKFEEDLFHV---EGPDY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I     LP  +      FR E     R   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRDEILGAEQLPLCYTAYTPCFRKEAGSHGRDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             F   PE S    +K+  +  ++   L L    +   +G IG   +  F + 
Sbjct: 285 VKFVA-PENSDAELDKLLANAEKVLQLLELPYRVVDLCTGDIGFSAARTFDIE 336


>gi|217316847|gb|ACK37829.1| putative glutamyl-prolyl tRNA synthetase [Calappa gallus]
          Length = 134

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S  M   F+  + K+       S+G+   R V  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMMEIVFEDPETKEKRFVYQNSWGMT-TRTVGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  +  L+ +        A       AC  +   L   G     D   
Sbjct: 74  GLVLPPHVASIQAILMPVGITAKTTEAEKAALYQACHDLEGELKSGGVKARCDLRD 129


>gi|228475643|ref|ZP_04060361.1| serine--tRNA ligase [Staphylococcus hominis SK119]
 gi|314935208|ref|ZP_07842561.1| serine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|228270425|gb|EEK11860.1| serine--tRNA ligase [Staphylococcus hominis SK119]
 gi|313656543|gb|EFS20282.1| serine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 427

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R+ I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRNEIIQPDVLPEKFTGQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S  +   M  +   I   L L    +   +G IG   S     E  + +  
Sbjct: 287 VRF-EKPEDSWDALEDMTQNAEAILEELKLPYRRVNLCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|57505889|ref|ZP_00371814.1| seryl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57015919|gb|EAL52708.1| seryl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 411

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L + +    +G+   +  +M ++    ++ + 
Sbjct: 166 GALLNRALINYMIDFNRSRGFKFVNVPFLVNQNAMFGTGQLPKFKDDMYKV---EEEDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T++F   I +  NLP         FR E     R   G++R  +F   +  
Sbjct: 223 LISTSEIALTNLFNDEILNAENLPLKMTAYSACFRKEAGSAGRDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S   +P+ S+  +N+M      +   LGL    M   +G +G   +     E  +     
Sbjct: 283 SI-TSPKQSESVFNEMCECASDLLSSLGLAHRWMMLCTGDLGFSAAKTIDLEVWLPGQNQ 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        + +    N +V 
Sbjct: 342 FREISSVSNCRDFQARRAKIRYKNEQGKNELVH 374


>gi|218289124|ref|ZP_03493360.1| glycyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240707|gb|EED07886.1| glycyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 464

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 71/459 (15%), Positives = 144/459 (31%), Gaps = 47/459 (10%)

Query: 25  LMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G I   S+   G+   + + PLG +   N+             + + +    L +
Sbjct: 11  LAKRRGFIFPGSEIYGGLANTWDYGPLGAQVKHNLKRAWWRFFIEQNPLNVGLDSAILMN 70

Query: 77  ADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
             +WV SG   ++   M+   +   R     +     E     +    +  +  +     
Sbjct: 71  KQVWVASGHVANFHDPMVDCRQCKARFRADKLIEEAAEAKGKSVVVDGLP-FAEMERLME 129

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           ++Q+   +           R+F M       +T + +   Y +   +   IF        
Sbjct: 130 ELQIACPNC--GARDFTNVRQFNMMFRTFQGVTEDAANEVYLR-PETAQGIFVNFKNVQR 186

Query: 194 PMR----AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            MR       G  G    +E         T+ F   +   F  P E+  +        + 
Sbjct: 187 TMRKKLPFGIGQFGKSFRNEITPGNFIFRTREFEQMELEFFCAPGEDEKWFVYWRQTCMD 246

Query: 250 EQ---WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATF 302
                   P       H ++      +           G     G    T Y L      
Sbjct: 247 WLLSLGIKPDNLRFRDHAKEQLSHYSKATTDIEYRFPFGWGELLGVANRTDYDLKAHQEH 306

Query: 303 KGADG-------KDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAP 346
            G +        +          IGA R+  AV   ++D +          +     +AP
Sbjct: 307 SGENMMVQEEGQEPFIPYCIEPSIGADRLFLAVFADAYDEEEVSEGDTRVVLRLHPKLAP 366

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           ++++++ +        +   ++Y  L K      +D+ G  IG ++   D +G P  V  
Sbjct: 367 YQVAVLPLSKK---LNEPAHRLYLDLIKH-YSADYDETG-SIGKRYRRQDEIGTPFCVTY 421

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +  SD +V I+ R +  +  + +E V  +   +  ++
Sbjct: 422 DFESESDGQVTIRMRDSMDQVRIPIEGVRTWLDEQLQSS 460


>gi|78188671|ref|YP_379009.1| seryl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123580121|sp|Q3ASQ9|SYS_CHLCH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78170870|gb|ABB27966.1| seryl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 426

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 72/202 (35%), Gaps = 10/202 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   ++  G +    +   + +    + G  E+  P L + +    +G++  +  ++ 
Sbjct: 164 GAGFPVYVGKGARLERALINFMLDMHTEQHGYTEVFPPFLVNQESLRGTGQWPKFADQVY 223

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +    +  +   PT E  +T++ R  +     LP ++      FR E     +   G +
Sbjct: 224 YI---GEDDLYAIPTAEVPLTNLHRGEMVETNALPISYTAYTACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R  +F   +   F   PE S  +  ++      I   L +    +   SG I  + +  +
Sbjct: 281 RVHQFNKVEMVKF-TRPEDSYTALEEIRHHAQAILEALKIPYRVLLLCSGDISANATKCY 339

Query: 211 IVL-ADTGETQVFCSKDFMDFP 231
            +      E +   +    +F 
Sbjct: 340 DIEVWSPAEEKYLEASSCSNFE 361


>gi|282850025|ref|ZP_06259407.1| serine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282580214|gb|EFB85615.1| serine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 426

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +       
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHV---EGTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGGEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S      +  +   +   L L    +   +G +G   +     E  + A 
Sbjct: 285 MVKL-AKPEDSFKELETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|114332132|ref|YP_748354.1| histidyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122313187|sp|Q0AE43|SYH_NITEC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|114309146|gb|ABI60389.1| histidyl-tRNA synthetase [Nitrosomonas eutropha C91]
          Length = 421

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 126/433 (29%), Gaps = 44/433 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           +  +G+   LP            IR      G   +  P ++  DL+V S G   D   K
Sbjct: 6   RAVRGMNDILPDESDLWGFFEDTIRTWLAAYGYRNLRTPIVEQTDLFVRSIGEVTDIVEK 65

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D+ N + +   P            H   Y   P   Y     FR E RP+ G  
Sbjct: 66  EMYSFIDQLNGENLTLRPEGTASCVRAVIEHNLLYS-GPQRLYYSGPMFRHE-RPQKG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R+F      +              M     R++  LG+  + +   +  +G   S   
Sbjct: 122 RYRQFHQVGVEALGFVGPDIDAELIIMCA---RLWRLLGIPDVRLEIST--LGSIESRLI 176

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK---L 267
                    + F  +   D     +      + S N  + +         D  +E     
Sbjct: 177 YRARLISYLEKFYDELDEDARRRLKTNPLRILDSKNPGMREILEGAPHLFDDLDEDSLIH 236

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGKD----------------- 309
           FD+L    R      E+ H    G  Y +  +        G                   
Sbjct: 237 FDALQRILRNQGISFEINHRLVRGLDYYNRTVFEWVTDKLGAQGTICAGGRYDGLIAQIG 296

Query: 310 -HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                   + +G  R+++ + E+    +            +  + +     +      K+
Sbjct: 297 GKPAPACGFAMGIERILSLISETDVAAE---------IHTVPDVYVVHQGDIAAGFSWKV 347

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIRE 427
              L   G  V     G    +Q   AD  G     I+G    +  +V IK  R    + 
Sbjct: 348 AESLRDAGFKVVLHSGGGSFKAQMKKADASGARFAAIIGDDEAATGQVSIKSLREAVEQV 407

Query: 428 DMSLEEVINYASH 440
            + L +V  +  +
Sbjct: 408 KIDLTKVAVFLEN 420


>gi|300118312|ref|ZP_07056059.1| histidyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|298724281|gb|EFI64976.1| histidyl-tRNA synthetase [Bacillus cereus SJ1]
          Length = 425

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 145/450 (32%), Gaps = 79/450 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  +A+            +   +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRALALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMSMAF-ELFQTLNLEVTIQYNNRKLLNGILQAINIPTEL 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +     +        +N  
Sbjct: 179 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIADFKEAFNNPL 237

Query: 267 LFDSLPENKRVSARGIEV--------------GHIFYFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +              G   Y GT Y + +      +       
Sbjct: 238 IADGVNELQQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGR 297

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  +     +   + +I + 
Sbjct: 298 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETV----SSTADVFIIPLG 346

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 347 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 395

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + +S + V +++   G    + L  + NY 
Sbjct: 396 EELSTNTVMLRNMKEGSEVKVPLSSLSNYL 425


>gi|288930008|ref|ZP_06423849.1| glycine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328667|gb|EFC67257.1| glycine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 513

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 119/363 (32%), Gaps = 70/363 (19%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM  L+D   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSLSDAASKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F +TP                                   G +L   F 
Sbjct: 261 MREFEQMEMQ-FFVTP-----------------------------------GTELDW-FH 283

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +T        K        +EN  F D   L       +           E      
Sbjct: 284 KWKET------RMKWHQALGFGAENYRFHDHEKLAHYANAASDIEFRMPFGFKEVE---- 333

Query: 272 PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    GI     F      K+S      F     + +   +    IG  R+  +V+
Sbjct: 334 ---------GIHSRTDFDLSQHEKFSGKSIKYFDPQTNESYTPYVIETSIGVDRMFLSVM 384

Query: 330 ESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             + + + +           P ++AP K++++ +   D    +   +I   L K   +  
Sbjct: 385 CHAFEEEKLENGETRTVLKLPAALAPVKLAVLPLVKKD-GLPEKAREIVNNL-KFKFNTH 442

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+  + IG ++   D +G P  V V    ++D+ V ++ R    +E ++++++ N    
Sbjct: 443 YDE-KDTIGKRYRRQDAIGTPYCVTVDHDTLTDNCVTLRFRDNMQQERVNIDQLENIIED 501

Query: 441 RFS 443
           + S
Sbjct: 502 KVS 504


>gi|157371843|ref|YP_001479832.1| histidyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166980049|sp|A8GHW4|SYH_SERP5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157323607|gb|ABV42704.1| histidyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 424

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 145/428 (33%), Gaps = 45/428 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  I+++  +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPEETALWQRIEGILKQVLSGYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYVGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-------PMRAESGPIGG 204
            R+F    A  F L          ++ +   R +  LG+              E+     
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDA---ELILLSARWWKALGISEHVKLELNSIGSLEARANYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFM------DFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           D    F+        +    + +       D   P      +D   L+  ++  +  +  
Sbjct: 179 DALVAFLEQHQEKLDEDCKRRMYSNPLRVLDSKNPEVQALLNDAPRLSEYLDADSKAHFE 238

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--AD--G 307
                  +       N+R   RG++     +F       G + ++     + G      G
Sbjct: 239 GLCELLAQAGIPYTINER-LVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACE 366
           +        + +G  R+V  V   + + K      + A   + +I+  A  Q       E
Sbjct: 298 RATPAV--GFAMGLERLVLLVQAVNPEFK------AAATIDVYVISSGAGTQSAAMQLAE 349

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++     ++     +     +   Q   AD  G  + +I+G   V+  +V +K   +G +
Sbjct: 350 RVRDAAPQLKLMTNYGGGNFK--KQITRADKWGARVALILGENEVAAQQVVVKDLRSGEQ 407

Query: 427 EDMSLEEV 434
           E ++  EV
Sbjct: 408 ETLAQSEV 415


>gi|321441293|gb|ADW85061.1| glu- + pro-tRNA synthetase [Axia margarita]
          Length = 134

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +   D ++  YV   S+GI   R +  ++    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEVVYDDPDTQEKAYVYQNSWGIT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++          +        C+ +   L   G     D       
Sbjct: 74  GLVLPPRVAEIQAIVVPCGITASSTAEERKSLIDSCKALVDNLVAAGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|241952971|ref|XP_002419207.1| class II aminoacyl-tRNA synthetase, putative; cytosolic seryl-tRNA
           synthetase, putative [Candida dubliniensis CD36]
 gi|223642547|emb|CAX42796.1| class II aminoacyl-tRNA synthetase, putative [Candida dubliniensis
           CD36]
          Length = 462

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 76/208 (36%), Gaps = 12/208 (5%)

Query: 18  AEIASHKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A+++ H+++LR  G      +       Y     G      +        ++ G + +  
Sbjct: 150 AKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSKKGYVPLQA 209

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPF 130
           P + + ++  ++ +   + +E+ ++ D  D+  +   + + +         +S    LP 
Sbjct: 210 PVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPV 269

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +  +G+ R   F   +       PE S   +++M       + 
Sbjct: 270 RYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPEKSWEEFDRMIGCSEEFYQ 328

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            LGL    +   SG +    + ++ + A
Sbjct: 329 SLGLPYRVVGIVSGELNNAAAKKYDLEA 356


>gi|323705874|ref|ZP_08117446.1| seryl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534870|gb|EGB24649.1| seryl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 423

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 9/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P +        +G+   + ++  ++A  
Sbjct: 164 FYKGLGCRLERALINFMMDLHTEKHGYTEVFPPFMVHRRSMFGTGQLPKFEEDAFKVA-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 222 -GTDYFLIPTAEVPVTNMYRETIIDSEKLPIYNCAYSACFRQEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +       PE S     KM      +   LG+    +   +G +G   + ++
Sbjct: 281 NKVELVKI-TEPEKSYEELEKMVSDAEDVLKTLGIPYRVVSICTGDLGFTAAKKY 334


>gi|320095946|ref|ZP_08027565.1| glycyl-tRNA synthetase beta subunit [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977117|gb|EFW08841.1| glycyl-tRNA synthetase beta subunit [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 509

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 149/444 (33%), Gaps = 59/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +   R  A  + +    +   + WV SG   ++   ++   
Sbjct: 82  WDYGPLGVELKENIKRQWWDHMVRRRADVVGLDSSVILPRETWVASGHVKAFTDPLIECL 141

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           + + +A       E            S  ++P     ++ ++  E R   G++++  FL 
Sbjct: 142 NCHKRAREDQLVEELAAKKGVEESQVSLADVPCPNCGVRGQW-TEPRAFSGLLKT--FLG 198

Query: 158 ---KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIV 212
               +A    L PE ++  +            +   G+         G IG    +E   
Sbjct: 199 PVDDEAGLHYLRPETAQGIFINFANVMTAARKKPPFGI---------GQIGKSFRNEITP 249

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                 T+ F   +   F  P  + ++                    +    E   +   
Sbjct: 250 GNFIFRTREFEQMELEFFCEPGTDEEWHQYWIDYRKAWYVGLGIDPENLREYEHPKE--- 306

Query: 273 ENKRVSARGIEVGHIFYFG-------------TKYSLPMS-------ATFKGADGKDHY- 311
           +    S R +++ + F F              T Y L +          +     K+ + 
Sbjct: 307 KLSHYSKRTVDLEYRFGFAGGEWGELEGIANRTDYDLTVHSQASGAKLDYFDPASKERWT 366

Query: 312 VQMGSYGIGAMR-VVAAVIESSHDGKGII------------WPDSVAPFKISLINIKAHD 358
             +     G  R ++A +IE+ H+ +                   +AP K +++ +    
Sbjct: 367 PYVIEPSAGLTRSLMAFLIEAYHEDEAPNAKGGVDKRVVLKLDPRLAPVKAAVLPLSRKP 426

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           ++   A E +   L  +  +V +DD G  +G ++   D +G P  +      V D  V +
Sbjct: 427 ELTGPASE-LADGLRGLW-NVDYDDAGA-VGRRYRRQDEIGTPFCITYDFDSVEDHAVTV 483

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R +  +  + L++V  Y   R 
Sbjct: 484 RERDSMEQVRIPLDQVKPYLVERL 507


>gi|186701898|ref|ZP_02971551.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186701208|gb|EDU19490.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 473

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 69/491 (14%), Positives = 148/491 (30%), Gaps = 144/491 (29%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK------ 91
           + + PLG    +N+  +  +E    +   + +    + +  +W  SG  D++        
Sbjct: 35  WDYGPLGVLLKNNLKNLWWKEFVTKQKNIVGLDSAIILNPLVWKASGHLDNFSDPLIDCK 94

Query: 92  ------------EML-------------RLADRNDKAMIYGPTHEE-------VMTDIFR 119
                       E                     +   I+ PT ++           +F+
Sbjct: 95  SCKTRYRADKLIESFNKDIHIAENSTNEEFMKVLNDHKIFCPTCKQFNWTDIRHFNLMFK 154

Query: 120 SHI-----------------------------KSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           +H                                  +LPF   QI   FR+E+ P   + 
Sbjct: 155 THQGVIEDPKNIVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNEITPGNFIF 214

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REF   +   F       + +   +F  YL                            
Sbjct: 215 RTREFEQMEIEFFLK-----EETAYDVFDKYLN--------------------------- 242

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                             ++ +     D       N++ +        +        F+ 
Sbjct: 243 ---------------QIQNWLVTCCGLDL------NNLRKHEHPREELSHYSKKTIDFEY 281

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGADGKDHY-VQMGSYGIGAMRVVAAV 328
              +      GI     +      +L     T+   + K  Y   +    +G  R++ A+
Sbjct: 282 NFLHGFSELYGIAYRTNYDLSVHMNLSKKDLTYFDEETKQKYIPHVIEPSVGVERLLYAI 341

Query: 329 IES-------SHDGKGII--WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +         ++D + I+      +AP+KI+++ +       ++  E +Y ++  +   V
Sbjct: 342 LTEATFIEKLANDEERILMNLKYDLAPYKIAVMPLVNK---LKEKAEAVYNKILDLNISV 398

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIV-----GSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +D+ G  IG ++   D +G    + +     G +   D    I+ R T  ++ + L E+
Sbjct: 399 TFDNSG-SIGKRYRRQDAIGTIYCITIDYDSFGDEH--DPTFTIRERNTMAQKRIKLSEL 455

Query: 435 INYASHRFSNN 445
             Y S +   N
Sbjct: 456 SLYLSQKAHEN 466


>gi|33597976|ref|NP_885619.1| seryl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|33602882|ref|NP_890442.1| seryl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|46577215|sp|Q7W545|SYS_BORPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|46577216|sp|Q7WCM7|SYS_BORBR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33574405|emb|CAE38743.1| seryl-tRNA synthetase [Bordetella parapertussis]
 gi|33577324|emb|CAE35881.1| seryl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 451

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 29/262 (11%)

Query: 19  EIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           E+  H  +    G+    +    G       GQ A     +   + + Q    G  E   
Sbjct: 146 EVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYT 205

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA----------DRND-----KAMIYGPTHEEVMTD 116
           P + ++     +G+   +  +M  +           D        +      T E  +T 
Sbjct: 206 PYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTS 265

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + R  I +  +LP         FR E     R   G++R  +F   +       PE S  
Sbjct: 266 VVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQI-AHPEHSYE 324

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +  +M     R+   L L    M   +G +  G   +++  V     +T    S      
Sbjct: 325 ALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCE 384

Query: 231 PIPSENTDFDDIISLNSIVEQW 252
              +         + N      
Sbjct: 385 TFQARRMQARFRNAQNKPEYVH 406


>gi|33593453|ref|NP_881097.1| seryl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|46577212|sp|Q7VW08|SYS_BORPE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33572809|emb|CAE42742.1| seryl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|332382862|gb|AEE67709.1| seryl-tRNA synthetase [Bordetella pertussis CS]
          Length = 451

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 29/262 (11%)

Query: 19  EIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           E+  H  +    G+    +    G       GQ A     +   + + Q    G  E   
Sbjct: 146 EVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYT 205

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA----------DRND-----KAMIYGPTHEEVMTD 116
           P + ++     +G+   +  +M  +           D        +      T E  +T 
Sbjct: 206 PYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTS 265

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           + R  I +  +LP         FR E     R   G++R  +F   +       PE S  
Sbjct: 266 VVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQI-AHPEHSYE 324

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +  +M     R+   L L    M   +G +  G   +++  V     +T    S      
Sbjct: 325 ALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCE 384

Query: 231 PIPSENTDFDDIISLNSIVEQW 252
              +         + N      
Sbjct: 385 TFQARRMQARFRNAQNKPEYVH 406


>gi|171315517|ref|ZP_02904753.1| seryl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171099354|gb|EDT44092.1| seryl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 433

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--- 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+     +   
Sbjct: 169 ARLHRALAQFMIDTHTLQHGYSETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGGENTI 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVEGSALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       P+ S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PDASYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|170698494|ref|ZP_02889565.1| seryl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170136578|gb|EDT04835.1| seryl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 433

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--- 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+     +   
Sbjct: 169 ARLHRALAQFMIDTHTLQHGYSETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGGENTI 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVDGSALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       P+ S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PDASYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|157813080|gb|ABV81285.1| putative bifunctional aminoacyl-tRNA synthetase [Prodoxus
           quinquepunctellus]
          Length = 134

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S RGI+     + G  +S      F+  + ++    + +      R +  ++    D +G
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVFEDPETQEKKFVLQNSWGLTTRSIGVMVMVHGDNQG 74

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM-GEQIG 389
           ++ P  VA  ++ +I       +  +        C++   +LS  G     D       G
Sbjct: 75  LVLPPRVACVQVIVIPCGVTASMTEEEKDNLTASCKQYVEKLSAAGVRARGDYRDNYSPG 134


>gi|145640319|ref|ZP_01795903.1| histidyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274905|gb|EDK14767.1| histidyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 423

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 147/429 (34%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++  A +     + +  
Sbjct: 187 HQDLMNDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGATLAAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +            QF  AD  G  L +++G   V + +V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVN 414

Query: 434 VINYASHRF 442
           +I+Y   +F
Sbjct: 415 IIDYLQTQF 423


>gi|68471848|ref|XP_719967.1| potential serine tRNA synthetase [Candida albicans SC5314]
 gi|46441814|gb|EAL01108.1| potential serine tRNA synthetase [Candida albicans SC5314]
          Length = 458

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 80/245 (32%), Gaps = 20/245 (8%)

Query: 18  AEIASHKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A+++ H+++LR  G      +       Y     G      +        +  G + +  
Sbjct: 146 AKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQA 205

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPF 130
           P + + ++  ++ +   + +E+ ++ D  D+  +   + + +         +S    LP 
Sbjct: 206 PVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPV 265

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +  +G+ R   F   +       PE S   +++M       + 
Sbjct: 266 RYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPEKSWEEFDRMIGCSEEFYQ 324

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LGL    +        G +S E    A              ++      ++  D  S N
Sbjct: 325 SLGLPYRVV--------GIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRN 376

Query: 247 SIVEQ 251
             +  
Sbjct: 377 LEIRC 381


>gi|291165779|gb|EFE27827.1| serine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 423

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 9/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +   ++            G  EM  P + +A  ++ +G+   + ++M RL   
Sbjct: 165 LYRDLGARLERSIINFFLNTHTAENGYTEMLPPFIANARSFIGTGQLPKFEEDMFRL--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+I R  I    +L   +      FR E     R   G++R  +F
Sbjct: 222 EGLDYYLVPTAEVPVTNIHRDEIMKAEDLTTKYCSYTPCFRAEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +   F   PE S      +      +  +LGL    ++  SG +G   + ++
Sbjct: 282 QKVELVKF-TKPEDSYAELETLVQDAESVLQKLGLPYRVVQICSGDLGFTAAFKY 335


>gi|120404776|ref|YP_954605.1| glycyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|166227938|sp|A1TBP9|SYG_MYCVP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|119957594|gb|ABM14599.1| glycyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 468

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/388 (13%), Positives = 112/388 (28%), Gaps = 84/388 (21%)

Query: 82  ESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             G++       M+       +        +   T + +  +       + +  PF   Q
Sbjct: 137 TKGQWTEPRDFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQ 196

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           I   FR+E+ P   + R+REF   +   F                               
Sbjct: 197 IGKSFRNEITPGNFIFRTREFEQMEMEFF------------------------------- 225

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVEQWT 253
                           +  +   E   +  +     +     N D   +           
Sbjct: 226 ----------------VEPSTAAEWHRYWIETRLQWYVDLGINRDNLRLYEHPKEKLSHY 269

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHY 311
           +      +       +   E + ++ R       F   T  K+S    + +  A+   + 
Sbjct: 270 SDGTTDIEYKFGFAGNPWGELEGIANR-----TNFDLSTHSKHSGVDLSFYDQANDTRYV 324

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAH- 357
             +     G  R + A +  ++                 +     +AP K +++ +  H 
Sbjct: 325 PYVIEPAAGLTRSLMAFLVDAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRHA 384

Query: 358 --DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 RD   ++    +     V +DD G  IG ++   D +G P  +      + D  
Sbjct: 385 DLSPKARDLAAELRQSWN-----VEFDDAGA-IGRRYRRQDEIGTPYCITFDFDSLEDHA 438

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V I+ R    +E +++ EV NY + R  
Sbjct: 439 VTIRERDAMTQERVAISEVSNYLAVRLK 466


>gi|172059906|ref|YP_001807558.1| seryl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|238689188|sp|B1YUL5|SYS_BURA4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|171992423|gb|ACB63342.1| seryl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 433

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--- 102
            +    +   + +    + G  E   P + + ++   +G+   +  +M R+     +   
Sbjct: 169 ARLHRALAQFMIDTHTLQHGYSETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGGENTI 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVEGSALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       P+ S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PDASYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|330998357|ref|ZP_08322181.1| serine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329568463|gb|EGG50268.1| serine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 429

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 116/350 (33%), Gaps = 76/350 (21%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYNLIDFDLGVKITGAGFPVYRGKGARLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +      +G+      +M      N       PT E  +T+I+R  I 
Sbjct: 192 SGYEEIMPPTVVNEASGYGTGQLPDKEGQMY---HCNLDNFYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             ++LP         FR E     +   G+ R  EF   +    D  PE S+ S+ +M  
Sbjct: 249 DEKDLPVKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVEIVRID-KPEHSEQSHQEMLA 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +  +L L    +R      GGD+S              F S    DF + SE    
Sbjct: 308 HVEGLLQKLELPYRILRLC----GGDMS--------------FTSSICYDFEVYSEAQKR 349

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                                     +EV  +  F T  +  + 
Sbjct: 350 W-----------------------------------------LEVSSVSNFDTYQANRLK 368

Query: 300 ATF-KGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
             + +  D K      +    +   R+VAA++E++   +GI  P  + P+
Sbjct: 369 CRYRRAEDKKTELCHTLNGSALALPRIVAAIMENNQTPEGIRVPKCLVPY 418


>gi|257053054|ref|YP_003130887.1| histidyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691817|gb|ACV12154.1| histidyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 434

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 135/435 (31%), Gaps = 56/435 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P    A   V   + +   R G  E++ P L+   ++  +SG  +   +++  
Sbjct: 6   KGFRDFYPAEMAAHREVIDTVEDTAARYGFREIATPALEETRMYVEKSG--EEIVEDLYS 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +  +   +    S    P  +Y  +  +R E  P+ G  R R
Sbjct: 64  FEDQGGRDVALTPELTPTVARMVVEKQQALS---KPIKWYSTRPFWRYEE-PQQG--RFR 117

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEFI 211
           EF   +   F      +           L     LGL       R     I G L   F 
Sbjct: 118 EFYQTNVDIFGSEEPEADAEILAFAADAL---TNLGLDADDFDFRVSHRDILGGLLEAFD 174

Query: 212 VL-------------ADTGETQVF-----------CSKDFMDFPIPSENTDFDDIISLNS 247
                          A   E + +            ++ F       +  +  D    + 
Sbjct: 175 ADVDQRAAIRAVDKSAKIEEAEYYDLLTESGLSYDQAEQFDALLATDDLDELTDFAGTDR 234

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGA 305
           + +      A  +   +  + +        +ARG++   G +F           A F   
Sbjct: 235 VADAVENLEAVLAAAEDFGVREYT-TISLETARGLDYYTGVVFECFDSVGEVSRAVFG-- 291

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI------IWPDSVAPFKISLINIKAHDQ 359
            G  +   + S+G      V       +    +      +WP+        ++ +     
Sbjct: 292 -GGRYDDLIESFGGQPTPAVGVAPGVMNSTLPLLLQRAGVWPEEELSTDYYVLQVGD--- 347

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             R    +I   L + G  V  D      G Q   AD +     +IVG + + + ++ IK
Sbjct: 348 -TRSVASRIARELRERGHVVETDVSDRSFGGQLDYADSINAETAIIVGERDLENDEITIK 406

Query: 420 HRLTGIREDMSLEEV 434
              +G +  + + + 
Sbjct: 407 DMASGDQVQVPVADF 421


>gi|326799118|ref|YP_004316937.1| glycyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326549882|gb|ADZ78267.1| glycyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 488

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/494 (13%), Positives = 163/494 (32%), Gaps = 84/494 (17%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV-- 71
           + SH      G +   S        +Y +  LG +  +N+     +   +     + +  
Sbjct: 11  VISHAK--EYGFVFPSSEIYDGLSAVYDYGQLGAELKNNIKTYWWKAMVQLNENIVGIDS 68

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF- 130
                  +W  SG  D +   M+   D   +         E     +    K+ + +   
Sbjct: 69  AIFMHPKIWKASGHVDGFNDPMIDNKDSKKRYRADQLI--EDKIARYEKDGKTDKAVKLQ 126

Query: 131 -------------TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
                            I  +   E+             R+F +  +       +GS+  
Sbjct: 127 ADLDAALNSDDLGRLKSIIEEH--EIACPVSGTKNWTEVRQFNLMFSTQMGAMADGSEEV 184

Query: 174 YNK------MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y +      +FV++L +    R+ +     +     IG    +E I        + F   
Sbjct: 185 YLRPETAQGIFVNFLNVQKTGRMKIPFGIAQ-----IGKAFRNEVIARQFIMRMREFEQM 239

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +   F  P    ++ +      +          +   +++ +  +       +   +++ 
Sbjct: 240 EMQFFVRPGTELEWYNQWKETRLKWHLALKPNPSKYRYHDHVKLAH-----YANAAVDIE 294

Query: 286 HIFYFG----------TKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAA 327
           + F FG          T + L    TF G           +++   +    IG  R+   
Sbjct: 295 YEFPFGFKEVEGIHSRTDFDLSQHQTFSGRKLQYFDPEINQNYVPYVIETSIGLDRMFLT 354

Query: 328 VIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           ++ ++++ + +                ++AP K ++  +   D    +   ++   L K+
Sbjct: 355 ILCNAYEEEDLSTDEKQDSRSVLHLHPALAPIKAAVFPLTKKD-GLPEKAREVMDLL-KI 412

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             ++ +++    IG ++   D +G P+ + V  + + D  V I+HR +  +E ++++++ 
Sbjct: 413 DYNIIYEEKDA-IGKRYRRQDAIGTPICITVDHQSLQDDTVTIRHRDSMEQERVAIKDL- 470

Query: 436 NYASHRFSNNRPVL 449
                     +P+L
Sbjct: 471 EKLLDGIVGWKPLL 484


>gi|312792870|ref|YP_004025793.1| seryl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180010|gb|ADQ40180.1| seryl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 420

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P L +    + +G+   + ++  +  D 
Sbjct: 164 FYRGLGARLERALINFMLDLHIEKHGYTEIFPPFLVARKSMIGTGQLPKFEEDAFKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I    +LP  +      FR E     +   G++R  +F
Sbjct: 223 ---DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    +   SG +G   +  + + 
Sbjct: 280 NKVELVKF-AKPEESYDELEKLTADAEDVLKELGLPYRVVLLCSGDLGFSSAKTYDIE 336


>gi|169823798|ref|YP_001691409.1| seryl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|238687725|sp|B0RZY8|SYS_FINM2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167830603|dbj|BAG07519.1| seryl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 421

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 11/215 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    +   + +   ++ G  EM+ P L S    + +G+   + ++M          
Sbjct: 168 KGARLERALMNFMVDLHTDKQGYTEMNTPVLMSPSAMMGTGQIPKFKEDMFYC---EKDD 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           M   PT E  +T++    I    +LP  +      FR E     R   G++R+ +F   +
Sbjct: 225 MYLAPTAEVPVTNLLGGEILEQGSLPIYYTAFTQCFRREAGSAGRDTRGLIRNHQFEKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTG 217
              F + P  S     K+  +   I   L +    +R  SG +G    ++++  V   + 
Sbjct: 285 MVKF-VEPSTSYDELEKLTNNAEEILQLLEIPYRVVRLCSGDLGFSSAMTYDIEVWMPSY 343

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              V  S         +   +       N      
Sbjct: 344 NRYVEISSCSNFEDFQARRANIRYRDENNKPQYVH 378


>gi|157813066|gb|ABV81278.1| putative bifunctional aminoacyl-tRNA synthetase [Nebalia hessleri]
          Length = 134

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+G+   R +  ++    D K
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYDDPETHEKRYVFQNSWGLT-TRTIGVMVMVHGDDK 73

Query: 337 GIIWPDSVAPFKISL----INIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGE 386
           G++ P  VA  ++ +    + +K  ++      D+C+++   L   G     D    
Sbjct: 74  GLVLPPRVATVQVIIMAVGVTVKTSEEDRXKLFDSCKELEQSLKXDGVRXRCDFRDH 130


>gi|86749859|ref|YP_486355.1| seryl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|123004117|sp|Q2IWG6|SYS_RHOP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|86572887|gb|ABD07444.1| seryl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
          Length = 476

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 82/252 (32%), Gaps = 63/252 (25%)

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           +     PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F  
Sbjct: 273 ERFWLIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTK 332

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +  S   TPE SK  + +M      +  RLGL    M   +G +G      + +     
Sbjct: 333 VELVSI-TTPEQSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIE---- 387

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                     +  P   E   + +I S +                               
Sbjct: 388 ----------VWMPGQGEGGAYREISSCSV------------------------------ 407

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
                        G   +  M A  +G DGK  +V  +   G    R + AVIE+     
Sbjct: 408 ------------CGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRALIAVIENYQQED 455

Query: 337 G-IIWPDSVAPF 347
           G I  PD++ P+
Sbjct: 456 GSIAVPDALQPY 467


>gi|317402141|gb|EFV82733.1| SerS protein [Achromobacter xylosoxidans C54]
          Length = 448

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 21/177 (11%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-------- 97
            +    +   + + Q    G  E   P + +A     +G+   +  +M  ++        
Sbjct: 177 ARLHRALAQFMLDLQTGTHGYTECYTPYIVNASTLYGTGQLPKFKDDMFAVSKGGGDDDP 236

Query: 98  --DRND-----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPR 146
             D +      +      T E  +T + R  I++  +LP         FR E     R  
Sbjct: 237 KVDEHGKPFVREDQYLISTSEITLTSVVRDTIQAAADLPLKLTAHTPCFRSEAGSGGRDT 296

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            G++R  +F   +       P+ S  +   M     R+   LGL    M   +G +G
Sbjct: 297 RGMIRQHQFDKVEMVQV-TQPDQSYEALEGMVGHAERVLQLLGLPYRVMLLCTGDMG 352


>gi|290961832|ref|YP_003493014.1| histidyl tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260651358|emb|CBG74480.1| histidyl tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 420

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 139/434 (32%), Gaps = 42/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            Q  KG Y  +P        V   I      +G   +  P  ++ +L+        D   
Sbjct: 4   FQAPKGTYDLIPPDSATYLAVREAIAAPLRDSGYGYIETPGFENVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDRLALRPEG-TASVLRAALEANLHKTGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL++  +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLQNFRILLNSLGDKECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E  +  +       +  +       +    ++  +          
Sbjct: 177 YRAALQDFLRGLDLDEDTLRRADINPLRVLDDKREAVQKQLGDAPLLRDYLCDACKAYHE 236

Query: 263 HNEKLFDSLP---ENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKD 309
              +L  +     E+     RG++      F       G++ ++     + G     G  
Sbjct: 237 EVRELITAAGVAFEDDLKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G + +G  R V A+     +G  +  P + + + + L       +  R       
Sbjct: 297 ALPSVG-WALGVDRTVLAL---EAEGVALELPATTSVYAVPL------GEEARRLLFAKV 346

Query: 370 ARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L KVG    +   G+ + G+    A+  G    V+ G + +++  V++K   +G +  
Sbjct: 347 TELRKVGIAADFAYGGKGLKGAM-KNANRSGARYTVVAGERDLAEGVVQLKDMESGEQVA 405

Query: 429 MSLEEVINYASHRF 442
           + + E++     R 
Sbjct: 406 VGVNEIVAELEARL 419


>gi|229846456|ref|ZP_04466564.1| histidyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810549|gb|EEP46267.1| histidyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 423

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 137/428 (32%), Gaps = 49/428 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
            F    PE        + +   R++  LG+    +  +   IG   +      A  G  +
Sbjct: 131 VFGIANPEIDAE----LIILTYRLWKALGIDQY-VTLQLNSIGSLEARANYRSALVGFLE 185

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSA 279
                   +            + + N  +++           + +E           + A
Sbjct: 186 NHQDLMSDEEKDRLVKNPLRILDTKNPELQKVLDNAPKLLDYLDDESREHFEQLCALLDA 245

Query: 280 RGIEVGHIFYF--GTKY---------SLPMSAT--------FKG--ADGKDHYVQMGSYG 318
            GI+         G  Y         +  + A         + G       H      + 
Sbjct: 246 VGIQYEINPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFA 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKV 375
           +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L   
Sbjct: 306 MGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGATLAAFELAEKVRSELP-- 355

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEV 434
             +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  +
Sbjct: 356 HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNI 415

Query: 435 INYASHRF 442
           I+Y   +F
Sbjct: 416 IDYLQTQF 423


>gi|84496816|ref|ZP_00995670.1| glycyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84383584|gb|EAP99465.1| glycyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 471

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 143/449 (31%), Gaps = 61/449 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +         + +    +   + WV SG   ++      L 
Sbjct: 35  WDYGPLGVELKENIRRQWWKSMVIGRDDIVGLDSSIILPRETWVASGHVGTFTD---PLT 91

Query: 98  DRNDKAMIYGPTH-EEVMTDIFRSHIKSYRNL---PFTFYQIQLKFRDELRPRFGVMRSR 153
           +       +   H +E + D       +   +         I        R ++    +R
Sbjct: 92  ECLSCHKRFRVDHMQEAIADKANKRAAADAQVDPDSIQLADIACPNCG-TRGQWT--EAR 148

Query: 154 EFLMKDAYSFDLTPEGS------KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           EF M       +  +          +   +F+++L +      K     A++   G    
Sbjct: 149 EFNMMLKTHLGVIEDDKGLAYLRPETAQGIFINFLNVMQTSRKKPPFGIAQT---GKSFR 205

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E         T+ F   +   F  P ++ ++                    +  H E  
Sbjct: 206 NEITPGNFIFRTREFEQMEMEFFVKPGDDVEWHQYWIDERTRWYVDLGINPDNLRHFEHP 265

Query: 268 FDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD-------- 306
            D   +    S R +++ + F F              T + L       G D        
Sbjct: 266 AD---KLSHYSTRTVDIEYRFNFAGSEWGELEGIANRTDFDLKTHTEHSGTDLLFFDQTT 322

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLIN 353
           G+ +   +     G  R +   +  ++                 +     +AP K +++ 
Sbjct: 323 GEKYTPYVIEPAAGLSRSLMTFLVDAYAEDEAPNTKGGVDKRVVLKLDRRLAPVKAAVLP 382

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           + + +         + A L K   +V +DD G  IG ++   D +G P  + V    + D
Sbjct: 383 L-SRNADLSPKARDLAATLRKHW-NVDFDDAGA-IGKRYRRQDEIGTPFCITVDFDTLDD 439

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
             V I+ R T  +E ++L++V  Y + R 
Sbjct: 440 QAVTIRERDTMAQERVALDQVEGYLAQRL 468


>gi|295675841|ref|YP_003604365.1| seryl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295435684|gb|ADG14854.1| seryl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 431

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+  +      G    +  GQ A     +   + +    + G  E+
Sbjct: 133 DFEVKDHVDVGTPLGLDFETGAKLSGARFTMLRGQIARLHRALAQFMIDTHTQQHGYTEI 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDIFRSHIKSYR 126
             P + + D+   +G+   +  +M R+     ++        T E  +T+  R  I    
Sbjct: 193 YTPYIVNPDILYGTGQLPKFADDMFRVEKGGGESTVTQYLISTSEISLTNTVRESIVDAD 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +       P+ S  +  +M     
Sbjct: 253 ALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVA-PDASYDALEQMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 AILQKLELPYRVITLCTGDMGFSAAKTYDLEVWLPAQNTYREISSCSNTESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           F +      +V 
Sbjct: 372 FRNAQGKPELVH 383


>gi|70998636|ref|XP_754040.1| glycyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66851676|gb|EAL92002.1| glycyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159126226|gb|EDP51342.1| glycyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 699

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 64/149 (42%), Gaps = 8/149 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAPFKISLINIKAH 357
            + +++   +     G  R++ ++IE  +           + +P ++AP K+ ++ +  H
Sbjct: 534 ENVREYTPNVIEPSFGIGRILYSMIEHVYWAREEDEARGVLSFPPAIAPTKVLIVPLSTH 593

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R   +++  +L ++G     DD    IG ++A  D LG P  + V  + V D+   
Sbjct: 594 -ASFRPLLQQLMTKLRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFT 652

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R T  +   S +E++          +
Sbjct: 653 LRDRDTTKQVRASEDEILQAIKSLVDGEK 681



 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMFVSYL 182
           +PF    I   FR+E+ PR G++R REFLM +   + + PEG K          + +++L
Sbjct: 283 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEGGKKHHRFEEVKDIEMAFL 341

Query: 183 R 183
            
Sbjct: 342 N 342



 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y + P G   L+N+  + R+        +E+    L   ++   SG  D +   M
Sbjct: 81  SGLYDYGPPGTALLNNIVDLWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWM 138


>gi|319740163|gb|ADV60375.1| glu- + pro-tRNA synthetase [Hyles lineata]
          Length = 134

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R ++     + G  +S      +  A+ ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAVQGATSHHLGQNFSKMFEIVYDDAETQEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++          +        C+ +   L   G     D       
Sbjct: 74  GLVLPPRIAEIQAIVVPCGITASSTAEERKSLIDSCKALVDDLVAAGIRADGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|239932408|ref|ZP_04689361.1| histidyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291440774|ref|ZP_06580164.1| histidyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291343669|gb|EFE70625.1| histidyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 420

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 138/433 (31%), Gaps = 40/433 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  +P        V   I      +G   +  P  +S +L+        D   
Sbjct: 4   FKAPKGTYDLIPPDSAKYLAVRDAIAAPLRNSGYGYIETPGFESVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDRLALRPEG-TASVLRAALEANLHKAGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL    +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLSDFRILLNSLGDQECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E  +  ++      +  +       ++   ++  +      T   
Sbjct: 177 YRAALQDFLRGLDLDEDTLRRAEINPLRVLDDKRESVQKQLTGTPLLRDYLCDACKTYHE 236

Query: 263 HNEKLFDSLPENKRVSA---RGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKD 309
              +L  +            RG++      F       G++ ++     + G     G  
Sbjct: 237 EVRELITAAGVAFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G + +G  R V A+     +G  +  P++ + F + L       +  R       
Sbjct: 297 ALPSVG-WALGVDRTVLAL---EAEGVELQLPETTSVFAVPL------GEEARRVLFAKV 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K G    +   G+ + +    A   G    +++G + +++  V++K+  +G +  +
Sbjct: 347 TELRKNGVAADFAYGGKGLKAAMKAAHRSGARYALVLGERDLAEGVVQLKNMESGEQTAV 406

Query: 430 SLEEVINYASHRF 442
            + E++     R 
Sbjct: 407 GVNEIVAELESRL 419


>gi|160915140|ref|ZP_02077353.1| hypothetical protein EUBDOL_01148 [Eubacterium dolichum DSM 3991]
 gi|158432939|gb|EDP11228.1| hypothetical protein EUBDOL_01148 [Eubacterium dolichum DSM 3991]
          Length = 483

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 71/452 (15%), Positives = 131/452 (28%), Gaps = 53/452 (11%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-G 84
           + R  M +Q  KG    LP        +  +IR+        E+  P  +  +++     
Sbjct: 41  IRRDFMSYQVPKGTQDILPSEIGKWHRLEELIRQFCYVYNYKEIRTPIFEHTNVFKRGND 100

Query: 85  RYDSYGKEMLRLADRNDKAMI-YGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDE 142
             D   KEM      N    +   P     +   F  H      +LP   Y +  +FR E
Sbjct: 101 SSDMVNKEMYTFQLENSATSLTLRPEGTAGVARAFVEHKLYGNADLPMKMYYVGPQFRHE 160

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL--RIFHRLGLKSIPMRAESG 200
            RP+ G  R R F       F +   G+K +   +    L       LGL+ + +   + 
Sbjct: 161 -RPQKG--RMRIFNQ-----FGVEVIGAKSAMLDVEAIALGWSFVSALGLQDMKVLINT- 211

Query: 201 PIGGDLSHEFIVLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +G D S      A              D       +     D  +  +  + +     A
Sbjct: 212 -LGDDASRAAYRKALKEHFKADIDTMCADCKRRYEQNPLRILDCKVDKDKDIMKNVPRMA 270

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGAD--------- 306
              +  ++  FD +           EV      G  Y             +         
Sbjct: 271 DYLNEESKAYFDEVLAGLDALGIPYEVDDRLVRGLDYYTHTVFEVVSVNKEMGAQSTVFA 330

Query: 307 -----------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                      G    +    + +G  R++ A      +G  +   +S+  + + L    
Sbjct: 331 GGRYDGLVEYFGGPTSMSGIGWAMGLERLILA---CEAEGIELADEESLDAYVVCL---- 383

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                 R    ++  +L   G     D  D   +   +            ++VG   +  
Sbjct: 384 --SSSVRKQVLQLVTQLRAAGYSTDTDYLDRSFKAQFKTVARTRAKA--AIVVGEDDIEK 439

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V IK      + ++ LE+++      F   
Sbjct: 440 GSVTIKRVADQKKLEVKLEDIVEGMDTLFQEE 471


>gi|326381627|ref|ZP_08203321.1| glycyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199874|gb|EGD57054.1| glycyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 461

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 113/370 (30%), Gaps = 83/370 (22%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + D+     +   T + +  +       + R  PF   QI   FR+E+ P   + R+RE
Sbjct: 150 PVDDQEGLHYLRPETAQGIFVNFKNVMTTARRKPPFGIAQIGKSFRNEITPGNFIFRTRE 209

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F            E  +  +                                   F+   
Sbjct: 210 F------------EQMEMEF-----------------------------------FVKPG 222

Query: 215 DTGETQVFC-SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           +  E   +        +     + +   +           +      +       +   E
Sbjct: 223 EDEEWHKYWIDARHNWYVDLGIDPENLRLYEHPKEKLSHYSKSTVDVEYKFGFGGNPWGE 282

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVV 325
            + V+ R           T Y L   +   G D        G+     +     G  R +
Sbjct: 283 LEGVANR-----------TDYDLSTHSKASGEDLSFFDQASGERFTPFVIEPAAGLGRSM 331

Query: 326 AAVIESSHDGK-------------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            A +  ++  +              +     +AP K +++ + + ++        + A L
Sbjct: 332 MAFLCDAYTEEEVPNAKGGTDTRTMLKLDRRLAPVKAAVLPL-SRNEKLSPKARDLAAEL 390

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K   ++ +DD  + IG ++   D +G P  V V    + D  V I+ R T  +E ++L+
Sbjct: 391 RKHW-NIEFDD-AQGIGKRYRRQDEIGTPFCVTVDFDTLDDQAVTIRERDTMSQERVALD 448

Query: 433 EVINYASHRF 442
           +V+ Y   + 
Sbjct: 449 KVVEYLGGKL 458


>gi|304397062|ref|ZP_07378941.1| seryl-tRNA synthetase [Pantoea sp. aB]
 gi|304355211|gb|EFM19579.1| seryl-tRNA synthetase [Pantoea sp. aB]
          Length = 430

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 21/232 (9%)

Query: 19  EIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMS 70
           ++  H  +     G+    +    G    +  GQ A     ++  + +    + G +E S
Sbjct: 135 QVKDHVELGEAAKGLDFAAAVKLTGSRFVVMQGQIARLHRALSQFMIDLHTEQHGYLETS 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYR 126
           VP L +      +G+   +G+++       +++        PT E  +T++ R  I    
Sbjct: 195 VPYLVNHATLYGTGQLPKFGEDLFHTRPLEEESDSSNYALIPTAEVPLTNLVRDEILEED 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +     +TPE S  +  ++     
Sbjct: 255 TLPVKLTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VTPEQSMEALEELTGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           ++   L L    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 314 KVLQLLNLPYRKVLLCTGDMGFGATKTYDLEVWLPAQNTYREISSCSNMGDF 365


>gi|302550150|ref|ZP_07302492.1| histidyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302467768|gb|EFL30861.1| histidyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 420

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 132/438 (30%), Gaps = 50/438 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  +P        V   I      +G   +  P  ++ +L+        D   
Sbjct: 4   FKAPKGTYDLIPPDSAKYLAVREAIAAPLRNSGYGYIETPGFENVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDRLALRPEG-TASVLRAALEANLHKAGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL    +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LLILADQAYRSLGLSDFRILLNSLGDSECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E  +  ++      +  +       +    ++  +          
Sbjct: 177 YRTALQDFLRGLDLDEDTLRRAEINPLRVLDDKRESVQKQLGEAPLLRDYLCDACKAYHE 236

Query: 263 HNEKLFDSLPENKRVSA---RGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKD 309
              +L  +            RG++      F       G++ ++     + G     G  
Sbjct: 237 EVRELITAAGVAFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G + +G  R V A+     +G  +  P + + F + L       +  R       
Sbjct: 297 ALPSVG-WALGVDRTVLAL---EAEGVELELPATTSVFAVPL------GEEARRVLFAKV 346

Query: 370 ARLSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             L K G    +       G +        A+  G    V+ G + +++  V++K   +G
Sbjct: 347 TELRKNGIAADF-----SYGGKGLKGAMKNANRSGARYTVVAGERDLAEGVVQLKDMESG 401

Query: 425 IREDMSLEEVINYASHRF 442
            +  + + E++     R 
Sbjct: 402 EQTAVGVNEIVAELEARL 419


>gi|37678951|ref|NP_933560.1| histidyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|161501850|ref|NP_759422.2| histidyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|320157273|ref|YP_004189652.1| histidyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|31340443|sp|Q8DEZ9|SYH_VIBVU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|39932021|sp|Q7MNF0|SYH_VIBVY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|37197693|dbj|BAC93531.1| histidyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|319932585|gb|ADV87449.1| histidyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319999067|gb|AAO08949.2| histidyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 422

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 144/431 (33%), Gaps = 36/431 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +   ++   +  G  EM +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLEGAVKNVISAYGYNEMRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y      +Y +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIENGLLYNQEQRVWY-MGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           M     R++  LG+    +R E   IG   +    
Sbjct: 122 YRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGID-KHVRLELNSIGSLEARANY 177

Query: 212 VLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E             + ++N D   I+     +  +  P +    
Sbjct: 178 RTALIAFLEQHIDVLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLDPESTQHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               +L D+            RG++     +F + T+ SL    T  G  G  +   +  
Sbjct: 238 AGLCELLDAAGIEYTVNERLVRGLDYYNRTVFEWITE-SLGSQGTVCG--GGRYDGLVEQ 294

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLS 373
            G  A   V   +      + ++  +++    +     + +    +    A  K+  ++ 
Sbjct: 295 LGGKATPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQVR 351

Query: 374 KV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +   G  V     G     QF  AD +G  + +++G   V+D+ V +K    G +   S 
Sbjct: 352 EAIPGVRVMNHFGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLAGGEQVTYSQ 411

Query: 432 EEVINYASHRF 442
           +E+ +  +   
Sbjct: 412 QEIASKIAELI 422


>gi|319896698|ref|YP_004134891.1| histidyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|301169071|emb|CBW28668.1| histidyl tRNA synthetase [Haemophilus influenzae 10810]
 gi|317432200|emb|CBY80552.1| histidyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 423

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 147/429 (34%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++  A +     + +  
Sbjct: 187 HQDLMSDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNIPAKSA---VDIYVVYQGEGATLAAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +            QF  AD  G  L +++G   V + +V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVN 414

Query: 434 VINYASHRF 442
           +I+Y   +F
Sbjct: 415 IIDYLQTQF 423


>gi|52840758|ref|YP_094557.1| seryl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|67461694|sp|Q5ZY59|SYS_LEGPH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|52627869|gb|AAU26610.1| seryl tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 83/243 (34%), Gaps = 19/243 (7%)

Query: 20  IASHKLMLRT--GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           + SH  +      M    +    G    +  G  A     +   + +    + G  E+ V
Sbjct: 136 VKSHDELGEALGQMDFALAAKITGSRFVVMKGHLARLHRALIQFMLDIHIQQHGYQEIYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +AD  + +G+   +  ++ +L    D       T E  +T+  R  I S   LP  
Sbjct: 196 PYIVNADSLLGTGQLPKFEADLFKLT--GDNGYYLTSTSEIPVTNTVREMILSAEQLPIR 253

Query: 132 FYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +      FR E     +   G++R  +F   +   +   PE S ++  ++      I  R
Sbjct: 254 YVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVE-LVWITKPEDSYNALEQLTQHAEIILQR 312

Query: 188 LGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           L L    +   +G IG   +     E  + +     ++    +   F        F +  
Sbjct: 313 LNLPYRVVALCTGDIGAGSAKTYDLEVWLPSQNTYREISSCSNMEAFQARRMKARFRNPD 372

Query: 244 SLN 246
           +  
Sbjct: 373 TNE 375


>gi|293604542|ref|ZP_06686947.1| histidine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292817123|gb|EFF76199.1| histidine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 431

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 139/426 (32%), Gaps = 33/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP      +    I+R      G   +  P L+   L+    G   D   KEM  
Sbjct: 16  GMNDVLPGPSARWEQFEEIVRGWLRGYGYRNVRTPVLEHTRLFTRGIGEVTDIVEKEMYT 75

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N  ++   P     +      H   Y + P   Y I   FR E RP+ G  R R+
Sbjct: 76  FTDALNGDSLTMRPEMTAGIVRASIEHNMLY-DRPQRVYSIGPVFRHE-RPQRG--RYRQ 131

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D  +              M     R++  LGLK + +   S     + +     L 
Sbjct: 132 FHQIDVEALGFVGPDVDAELIVMLA---RLWKLLGLKDVRLELNSLGQPAERAAHRAALI 188

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +  E       +     + +      D  +        +AP      + +E         
Sbjct: 189 EHLEKHRDILDEDGQRRLYTNPLRVLDTKNPAMQEMANSAP-RLFDFLGDESRAHFEGVC 247

Query: 275 KRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA----- 326
           +R++  GIE         G   Y+L +        G    V  G    G + ++      
Sbjct: 248 QRLTEAGIEYSLNPRLVRGLDYYNLTVFEWVTDRLGSQGTVCGGGRYDGLIELLGGKPAP 307

Query: 327 AVIESSHDGKGI-IWPDSV---APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           AV  +    + + +W  SV   AP +  +  +   +   R     +   L   G  V   
Sbjct: 308 AVGFAIGMERLLDLWEQSVQLEAPAECDVYVVHQGEDAQR-LAASVGETLRDAGLSVIV- 365

Query: 383 DMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKH-----RLTGIREDMSLEEVI 435
                 G +  F  AD  G  + VI+G+  V+     +K+     +    ++ ++L ++ 
Sbjct: 366 -HAGSAGFKSQFKRADASGARVAVILGADEVASQTASVKYLRADAQGDTAQQQVALADLA 424

Query: 436 NYASHR 441
              +++
Sbjct: 425 AVLNNK 430


>gi|226954470|ref|ZP_03824934.1| histidyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834819|gb|EEH67202.1| histidyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 430

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 139/442 (31%), Gaps = 53/442 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP    A  ++   +    +  G  ++ +P ++   L+  +     D   KEM 
Sbjct: 8   KGFNDILPTQTAAWRSLEQQLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMY 67

Query: 95  RLADRN--DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+    +++   P            H       P  +Y +   FR E +P+ G  R 
Sbjct: 68  TFFDKGTPPESLTLRPEGTAGCVRAMLEHNLLRGAAPRVWY-VGPMFRYE-KPQKG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F      +F +           M     R++ R+G+    +R E   +G     E   
Sbjct: 124 RQFHQFGVETFGVATPDIDAEIILM---TARLWKRMGMAE-NVRLELNTLG-----ETDE 174

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNEKLFDS 270
            A+     V       D                  +S +E           +H+    DS
Sbjct: 175 RAEYRAALVEFLNQHKDQLDDDSQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDS 234

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI----------- 319
           L   +++     + G  F    K    +   +     +     +GS G            
Sbjct: 235 LNHFQQLQQYLTDAGVEFVINQKLVRGLDY-YNKTVFEWTTTMLGSQGTVCAGGRYDGLV 293

Query: 320 -----GAMRVVAAVIESSHDGKGIIWPDSVAPF------KISLINIKAHDQVCRDACEKI 368
                   + V AV  +    + ++  + VA        ++ L+   A+        E+I
Sbjct: 294 GQLKGKPDQSVPAVGFAMGMERLLLLLEQVAQTKDTRDCEVFLLAEPAYQAKALVLAEQI 353

Query: 369 YARLSKVGCDVFWDDMGEQIGSQ------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +L      +       + GSQ         AD  G    VI+G +     ++ +K   
Sbjct: 354 RDQLEAANSTIRL-----KTGSQGSMKSQMKKADQSGAVYAVILGEREWDSQQLLVKELA 408

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           T  +  +SL E+  +   +F  
Sbjct: 409 TAEQSQVSLAELAPFFIEKFKQ 430


>gi|225010202|ref|ZP_03700674.1| glycyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005681|gb|EEG43631.1| glycyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
          Length = 514

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 119/346 (34%), Gaps = 66/346 (19%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F + P 
Sbjct: 219 TAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRQREFEQMEMQFF-VRPG 277

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             K  Y+K   + ++  + LG  +   R           H+   LA   +          
Sbjct: 278 TQKEWYDKWKETRIKWHYSLGFSADNYRF----------HDHDKLAHYADAAA------- 320

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                              I  ++   +     +H+   FD    +++ S + ++     
Sbjct: 321 ------------------DIEFKFPFGFKELEGIHSRTDFDLS-SHEKHSGKKLQF---- 357

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV----IESSHDGKG-----II 339
                +   ++ ++           +    IG  R+  A+    +E      G     + 
Sbjct: 358 -----FDPELNESYV--------PYVVETSIGVDRMFLAIFSKSLEEETLENGSTRTVLK 404

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P  +AP K +++ +   D    +   +I+  L      V +D+    +G ++   D LG
Sbjct: 405 LPAVLAPTKAAILPLVKKD-GLSELAHEIFQELQ-WDFAVSYDEKDA-VGRRYRRQDALG 461

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P  + V  +   D  V I+HR +  +E ++++++        S  
Sbjct: 462 TPFCITVDHQTKEDQTVTIRHRDSMEQERVAVKDLAGIIEQAVSAK 507


>gi|312134746|ref|YP_004002084.1| seryl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774797|gb|ADQ04284.1| seryl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 420

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P L +    + +G+   + ++  +  D 
Sbjct: 164 FYRGLGARLERALINFMLDLHIEKHGYTELFPPFLVARKSMIGTGQLPKFEEDAFKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I    +LP  +      FR E     +   G++R  +F
Sbjct: 223 ---DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    +   SG +G   +  + + 
Sbjct: 280 NKVELVKF-AKPEDSYDELEKLTADAEDVLKELGLPYRVVLLCSGDLGFSSAKTYDIE 336


>gi|294793380|ref|ZP_06758525.1| serine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294455811|gb|EFG24176.1| serine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +       
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHV---EGTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGGEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S      +  +   +   L L    +   +G +G   +     E  + A 
Sbjct: 285 MVKL-AKPEDSFKELETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|152979678|ref|YP_001345307.1| histidyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171704494|sp|A6VQX5|SYH_ACTSZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150841401|gb|ABR75372.1| histidyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 423

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 138/426 (32%), Gaps = 45/426 (10%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        +   +R      G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTDSPLWQWIEDKVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            +   Y N     + +   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIENGWIYNNE-QRLWYMGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG--- 217
            F    PE        + +   R++  LG++   +  +   IG   +      A      
Sbjct: 131 IFGIANPEIDAE----LIILTARLWKELGIEQ-HVSLQLNSIGSLAARAGYRTALVAFLE 185

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             Q   S +  +  + +     D        V           D  + + F  L      
Sbjct: 186 NHQALMSDEEKERLLKNPLRILDTKNEALQEVLNDAPKLLDYLDDESRQHFTQLCALLDN 245

Query: 278 SARGIEVGHIFYFGTKY---------SLPMSAT--------FKG--ADGKDHYVQMGSYG 318
                E+      G  Y         +  + A         + G       H  Q   + 
Sbjct: 246 MGVQYEINPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATQGVGFA 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR-DACEKIYARLSKVGC 377
           +G  R+V  V E +   K I  P++V    I ++       +      EKI + L     
Sbjct: 306 MGLERLVLLVQEVN---KNISVPNAV---DIYVVFSGEGTTLAAFQTAEKIRSELP--HL 357

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVIN 436
            V     G +   QF  AD LG  L +++G   V   +V +K       ++ +S+ E+I+
Sbjct: 358 RVMTHCSGGKFQKQFKRADKLGAKLALVIGESEVQTDRVVVKDLSGAVEQQTISVVELID 417

Query: 437 YASHRF 442
           Y    F
Sbjct: 418 YLKRVF 423


>gi|304315564|ref|YP_003850709.1| seryl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777066|gb|ADL67625.1| seryl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 423

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 9/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +   ++ + + +    + G  E+  P +        +G+   + ++  ++A  
Sbjct: 164 FYKGLGCRLERSLISFMMDLHTEKHGYTEVFPPFMVHRRSMYGTGQLPKFEEDAFKVA-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 222 -GTDYFLIPTAEVPVTNMYRETIIDAEELPIYNCAYSACFRQEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +       PE S     KM      +   LG+    +   +G +G   + ++
Sbjct: 281 NKVELVKI-TEPERSYEELEKMVNDAEDVLKTLGIPYRVVSICTGDLGFTAAKKY 334


>gi|322804293|emb|CBZ01843.1| seryl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V +   +    + G  E+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERAVISYFLDTHTEKHGYTEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEILKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYEELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDAKAKPQYVHT 383


>gi|269102238|ref|ZP_06154935.1| seryl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162136|gb|EEZ40632.1| seryl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 436

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +      G  E
Sbjct: 135 DFEVKDHVDLGEMSDGLDFASAVKITGARFIVMKGQFARLHRAIAQFMLDLHIEEHGYTE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           M VP L +AD    +G+   +G ++        ++ D   + +   PT E  +T++ R  
Sbjct: 195 MYVPYLVNADSLFGTGQLPKFGADLFHTQPLTEKVNDEEPRTLSLIPTAEVPVTNLMRDT 254

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +       PE S  +  ++
Sbjct: 255 ISEEADLPVKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-TKPEDSMAALEEL 313

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                ++   L L    +   +G +G         E  V A     ++    +  DF   
Sbjct: 314 TGHAEKVLQLLELPYRKVVLCTGDMGFGSCKTYDLEVWVPAQETYREISSCSNMWDFQAR 373

Query: 234 SENTDF 239
                F
Sbjct: 374 RMQARF 379


>gi|218282368|ref|ZP_03488650.1| hypothetical protein EUBIFOR_01232 [Eubacterium biforme DSM 3989]
 gi|218216654|gb|EEC90192.1| hypothetical protein EUBIFOR_01232 [Eubacterium biforme DSM 3989]
          Length = 458

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 130/419 (31%), Gaps = 49/419 (11%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLRLADRNDKAMI-YG 107
              +   +R         E+  P  +  +++       D   KEM      N K  +   
Sbjct: 42  WQALEQTLRSFCYMYNYDEIRTPIFEHTEVFKRENDSSDMVNKEMYTFKLENSKTSLTLR 101

Query: 108 PTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +      + + +  +LP  FY +    R E RP+ G  R R F       F + 
Sbjct: 102 PEGTAGVVRSFVENKMYANPDLPAKFYYMGPMSRHE-RPQKG--RMRIFNQ-----FGVE 153

Query: 167 PEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             G K  Y  +   V    I   LGL  I +   +  +G D S      A       +  
Sbjct: 154 ALGVKSPYVDVETIVLAFSILKSLGLNDIKVCLNT--LGDDESRANYRSALKEYFAPYVD 211

Query: 225 KDFMDF---PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           +   D       +     D  +  +    +     +   +  +++ F+++ E        
Sbjct: 212 ELCSDCKRRYEQNPLRILDCKVDHDHECMKNAPKMSDYLNEASQEYFNTVCELLDKLEIP 271

Query: 282 IEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQM--------------------GSYGI 319
            EV      G  Y            ++       +                      + +
Sbjct: 272 YEVDDKLVRGLDYYTHTVFEIVSMNSEMGAQSTVLAGGRYDGLISYFGGPEGMSGIGWAL 331

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++ A+     +G  +    ++  + + L      D   R    ++   L   G   
Sbjct: 332 GMERLLIAL---EAEGIELETKPALDAYVMCL------DPEARTYAFEVLTSLRAYGYRC 382

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             D M     +QF   D     L +++G   + + KV +K+     +E + +E++I Y 
Sbjct: 383 DMDMMERSFKAQFKAVDRSKAKLAILIGKSELEEKKVTVKNIAHKEQESIEVEKLIPYV 441


>gi|149190089|ref|ZP_01868366.1| histidyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148836119|gb|EDL53079.1| histidyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 422

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 134/452 (29%), Gaps = 78/452 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   ++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVENTVKHVVSAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMYTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+    +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGLNGPDVDAELIMM---TARLWRELGIAE-HVRLELNSIGSLEARA 175

Query: 210 FIVLADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A             E             + S+N D   I+     +  +    +  
Sbjct: 176 DYRTALIAHLEQHIDVLDEDSKRRMYTNPLRVLDSKNPDVQAILVDAPELSDYLDADSKQ 235

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEV--------------------------GHIFYF 290
                 +L D+        +   RG++                           G +   
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQL 295

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G K +  +         +   +          R V A + ++ +G  +            
Sbjct: 296 GGKATPAVGFAMGLE--RLVLMMETLELTDVRRSVDAYVVTAGEGTMM------------ 341

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
                          E +   +   G  V     G     QF  AD +G    +++G   
Sbjct: 342 ---------AGMKLAESLREAIP--GIRVMNHFGGGNFKKQFKRADKVGAVYALVLGENE 390

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           V+++ V +K    G +E ++  E+    +   
Sbjct: 391 VAENTVVVKDLQGGEQETIAQTELAAKLADII 422


>gi|292656050|ref|YP_003535947.1| seryl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291371684|gb|ADE03911.1| seryl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 460

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 79/239 (33%), Gaps = 19/239 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQ------HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L+E P D     + L     +I +         G Y     G      +   + +     
Sbjct: 134 LRELP-DEVTPHYDLGEELDIIDEGRAAKTTGSGFYFLKGEGAMLEHALVQFMLDVHREQ 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR-----LADRNDKAMIYGPTHEEVMTDIFR 119
             +++  P          +G+   + ++  R       + +D  +   PT E  +T+++R
Sbjct: 193 EYVDLFPPIPVKTTSMEGTGQLPKFAEDAYRIGGAETENYDDDDLWLCPTAEVPVTNMYR 252

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I    +LP         FR E         G++R  +F   +  +F + P+ S     
Sbjct: 253 DEILLKDDLPLKHQAYTPNFRREAGEHGTETRGIVRVHQFNKVELVNF-VEPDESYDRLE 311

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            +      +  RLGL    +   +G        +++  V A   E++    +      +
Sbjct: 312 ALVDEAAEVLDRLGLPYRVLSLCTGDLTFASAKTYDLEVWAPGTESEDAPEQGGRWLEV 370


>gi|224006852|ref|XP_002292386.1| seryl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220972028|gb|EED90361.1| seryl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 499

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 63/209 (30%), Gaps = 14/209 (6%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
           Y     G      +         + G   +  P   + D+     + + + +++ +++ +
Sbjct: 194 YFLKNAGVLLNQALINYGIAFLRKRGYQVLQPPYFMNKDVMSGIAQLEDFDEQLYKVSGK 253

Query: 100 NDK-----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            D            T E+ +    ++     + LPF +  I   FR E     R   G+ 
Sbjct: 254 TDDPENTSEKYLIATSEQPICAYHKNEWIDDKALPFRYAGISTCFRKEAGSSGRDIRGIF 313

Query: 151 RSREFLMKDAYSFDLTP-EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----D 205
           R  +F   + +   +   E S     +M  +    +  LG     +   SG +       
Sbjct: 314 RVHQFEKIEQFCVVVDDFEESSKEQTRMIDAAKEFYESLGFPYRVVCIVSGALNDAAVKK 373

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              E          ++    +  D+    
Sbjct: 374 YDLEAWFPGQQAYRELVSCSNCTDYQARG 402


>gi|218290707|ref|ZP_03494789.1| seryl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239245|gb|EED06444.1| seryl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +    R G  EM    + + +  + +G    +G EM ++ 
Sbjct: 163 FVLYKGLGARLERALANFMLDFHVERHGYTEMFPAFIANEESLIGTGNLPKFGDEMFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+ +R  I S   LP  F      FR E     +   G++R  
Sbjct: 222 --EGLPYYLIPTAEVPLTNYYRDEILSADQLPVKFAGYSACFRSEAGSAGKDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +  +  L PE S     ++      +   L L    +   +G +G   +     E
Sbjct: 280 QFQKVELVNLCL-PEQSYEVLEQLTREAEAVLEALQLPYRRIEICTGDLGAKDAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + A     ++    +F D+     N  F
Sbjct: 339 VWLPAQNRYREISSCTNFEDYQARRANLRF 368


>gi|29833386|ref|NP_828020.1| histidyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|39932146|sp|Q827T0|SYH_STRAW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|29610509|dbj|BAC74555.1| putative histidyl-tRNA synthetase [Streptomyces avermitilis
           MA-4680]
          Length = 420

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 68/434 (15%), Positives = 140/434 (32%), Gaps = 42/434 (9%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  +P        V   I      +G   +  P  ++ +L+        D   
Sbjct: 4   FKAPKGTYDLIPPDSAKYLAVREAIAAPLRNSGYGYIETPGFENVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDRLALRPEG-TASVLRAALEANLHKAGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL++  +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQSYRSLGLRNFRILLNSLGDKECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E  +  ++      +  +  D    +    ++  +          
Sbjct: 177 YRAALQDFLRGLDLDEDTLRRAEINPLRVLDDKREDVQKQLGGAPLLRDYLCDACKAYHE 236

Query: 263 HNEKLFDSLPENKRV---SARGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKD 309
              +L  +   +        RG++      F       G++ ++     + G     G  
Sbjct: 237 EVRELITAAGVSFEDDAKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGP 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G + +G  R V A+     +G  +  P S + F + L       +  R       
Sbjct: 297 ALPSVG-WALGVDRTVLAL---EAEGVELELPSSTSVFAVPL------GEEARRILFAKV 346

Query: 370 ARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L KVG    +   G+ + G+    A+  G    V+ G + +++  V++K   +G +  
Sbjct: 347 TELRKVGIAADFAYGGKGLKGAM-KNANRSGARYTVVAGERDLAEGVVQLKDMESGEQTA 405

Query: 429 MSLEEVINYASHRF 442
           + + E++     R 
Sbjct: 406 VGVNEIVAELEARL 419


>gi|237708975|ref|ZP_04539456.1| LOW QUALITY PROTEIN: seryl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
 gi|229457037|gb|EEO62758.1| LOW QUALITY PROTEIN: seryl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
          Length = 304

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 104/316 (32%), Gaps = 66/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E   +G  E+  PT+ +      +G+      +M  
Sbjct: 44  GAGFPVYKGKGARLQRALINFFLDEARASGYEEIMPPTVVNTASGYGTGQLPDKEGQMYH 103

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 104 CEVDD---LYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 160

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +R      GGD+S    
Sbjct: 161 LHEFSKVELVRID-KPEHSKQSHQEMLDHVEGLLKKLELPYRILRLC----GGDMSFTAA 215

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +  D    +V+         + S +    D    N +  ++ +    T   H        
Sbjct: 216 LCFDF---EVYSEAQQRWLEVSSVSN--FDTYQANRLKCRYRSAEKKTELCHTLN----- 265

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                              G+  +LP                         R+VAA++E+
Sbjct: 266 -------------------GSALALP-------------------------RIVAALLEN 281

Query: 332 SHDGKGIIWPDSVAPF 347
           +   +GI  P ++ P+
Sbjct: 282 NQTPEGIRIPKALVPY 297


>gi|157813076|gb|ABV81283.1| putative bifunctional aminoacyl-tRNA synthetase [Antheraea
           paukstadtorum]
          Length = 134

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +  AD ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVYDDADTQEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++             +   D+C+     L   G     D       
Sbjct: 74  GLVLPPRIAEIQAIVVPCGITASSTXEERKNLMDSCKAFVDTLXAGGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|104781341|ref|YP_607839.1| seryl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|122403636|sp|Q1IBD0|SYS_PSEE4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|95110328|emb|CAK15035.1| seryl-tRNA synthetase ; also charges selenocystein tRNA with serine
           [Pseudomonas entomophila L48]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 10/193 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A     +G+   + +++ +++   +    
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEHYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I   + LP         FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNLVAGEIIDAKQLPIKLVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  R+   L L    +   +G +G         E  V +   
Sbjct: 290 QV-VEPSKSMEALEGLTANAERVLQLLELPYRVLALCTGDMGFGAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 349 YREISSCSNCGDF 361


>gi|16272317|ref|NP_438530.1| histidyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260580568|ref|ZP_05848396.1| histidyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174513|sp|P43823|SYH_HAEIN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1573338|gb|AAC22027.1| histidyl-tRNA synthetase (hisS) [Haemophilus influenzae Rd KW20]
 gi|260092910|gb|EEW76845.1| histidyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 423

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 146/429 (34%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++    +     + +  
Sbjct: 187 HQDLMSDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRTHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGATLAAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +            QF  AD  G  L +++G   V + +V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVN 414

Query: 434 VINYASHRF 442
           +I+Y   +F
Sbjct: 415 IIDYLQTQF 423


>gi|313212317|emb|CBY36313.1| unnamed protein product [Oikopleura dioica]
          Length = 673

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 133/429 (31%), Gaps = 77/429 (17%)

Query: 93  MLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGV 149
           M R  +     +     P   + +   F+  +  +   LPF   QI   FR+E+ PR G+
Sbjct: 225 MFRSEIGPTGAQPAFLRPETAQGIFLNFKRLLDFNNGKLPFAGAQIGHSFRNEIAPRAGL 284

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LG----------------- 189
           +R REF M +   F    + S  S + +    L  F +   +G                 
Sbjct: 285 IRCREFQMAEIEHFYDPADASHSSIDSVKELILPFFTKDAQMGGGKLTKCSIGAALKNEV 344

Query: 190 -----LKSIPMR--AESGPIGGDLS-HEFIVLADTGETQVFCSKDF--------MDFPIP 233
                L     R    +  IG D +   F    D                        + 
Sbjct: 345 LCNETLAYFIGRTFLFAKAIGIDPARMRFRQHMDNEMAHYAKDCWDLECRTSYGWVECVG 404

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI------ 287
             +    D+       +              +++F+++P  K+  A+  +          
Sbjct: 405 CADRSCFDLQCHAEASKVNLQAERTLPQPIEKEVFEAIPV-KKFIAKQFKKDTPAVTEAI 463

Query: 288 -----------FYFGTKYSLP------MSATFKGADGKDHY----VQMGSYGIGAMRVVA 326
                      F  G K +L           FK +  K H       +     G  R++ 
Sbjct: 464 QSADASDLEKQFENGEKINLAGFEIGKEMIQFKKSIKKFHTESFTPFVIEPSFGIGRLIY 523

Query: 327 AVIESSHDGK-------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           A +E ++D +           P  VAP+K S++ I    +        I A L       
Sbjct: 524 ACLEHNYDCREKDVERRFFTIPPLVAPYKCSVLPISNKPE-FDPFISTISAGLKNFSLAH 582

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS--DSKVEIKHRLTGIREDMSLEEVINY 437
             D     IG ++A  D +  P  V V    V    + V ++ R +  +  + +++  N 
Sbjct: 583 KVDKSSGSIGKRYARTDEIAVPFGVTVDFHTVKITPATVTLRDRDSLDQIRVPVQDTANL 642

Query: 438 ASHRFSNNR 446
            +   S  +
Sbjct: 643 INDMASQRQ 651



 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G++ + P+G    +N+  I R         +E+    +  + +   SG    +   M
Sbjct: 89  AGLFDYGPVGCMLKNNIIDIWRRHFITNDDMLEVECTMMTPSKVLDASGHAQRFADLM 146


>gi|323490216|ref|ZP_08095433.1| seryl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396112|gb|EGA88941.1| seryl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 424

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  EM  P + + +    +G+   + ++   + 
Sbjct: 163 FVFYRGLGARLERALINFMMDLHQEEHGYEEMLPPYMVNRESLTGTGQLPKFEEDAFLI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               +     PT E  +T+ +R  I +   LP  F      FR E     R   G++R  
Sbjct: 222 --EKEDYFLIPTSEVPVTNFYRDEILTADMLPQAFASYSSNFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHE 209
           +F   +   F + PE S     K+     ++   LGL    ++  +  +G         E
Sbjct: 280 QFNKVELVRF-VKPEDSYDELEKLTGHAEKVLQLLGLPYRVLKMCTADLGFTAAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +     ++    +F DF     N  F
Sbjct: 339 VWIPSQETYREISSCSNFEDFQARRANIKF 368


>gi|300690798|ref|YP_003751793.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Ralstonia solanacearum PSI07]
 gi|299077858|emb|CBJ50496.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Ralstonia solanacearum PSI07]
          Length = 438

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 27/257 (10%)

Query: 20  IASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVP 72
           +  H  L    G+         G    +  GQ A     +   + +      G  E  VP
Sbjct: 136 VKDHVDLGAALGLDFDAGAKLSGSRFTVLKGQVARLHRALAQFMLDTHTQEHGYTEAYVP 195

Query: 73  TLQSADLWVESGRYDSYGKEMLRL-----------ADRNDKAMIYGPTHEEVMTDIFRSH 121
            + +A     +G+   + +++ R+              + +     PT E  +T++ R  
Sbjct: 196 YIVNAASMRGTGQLPKFEEDLFRVPRKMGQTTESETGEHVENFYLIPTAEVPLTNLVRDE 255

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I     LP  F      FR E     +   G++R  +F   +     + P+ S  + + M
Sbjct: 256 IVLGDALPMKFAAHSPCFRSEAGSYGKDTRGMIRQHQFDKVEMVQI-VHPDTSFDALDTM 314

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                 I  +L L    +   +G +G   +     E  + A     ++    +  DF   
Sbjct: 315 THHAENILRKLELPFRTVVLCTGDMGFGSTKTYDIEVWIPAQNTYREISSCSNMGDFQAR 374

Query: 234 SENTDFDDIISLNSIVE 250
                F +      ++ 
Sbjct: 375 RMQARFRNAQGKPELLH 391


>gi|254449273|ref|ZP_05062720.1| seryl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198261128|gb|EDY85426.1| seryl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 427

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 78/203 (38%), Gaps = 11/203 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAM 104
            +    +   + +   ++ G  E+ VP + + D    +G+   +G+++ ++  +  D + 
Sbjct: 170 CRLHRALTQFMLDTHADQHGYQEVYVPYIVNQDSLYGTGQLPKFGEDLFKIEREGEDNSF 229

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I   ++LP         FR E     R   G++R  +F   + 
Sbjct: 230 YLIPTAEVPVTNMARDVIYEEKDLPLKRVAHTPCFRSEAGSYGRDTRGMIRQHQFEKVEL 289

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S  +  ++      I  +L L    +    G +G   +     E  +   +
Sbjct: 290 VQL-VKPEDSWQALEELCGHAETILQKLELPYRKVVLCGGDLGFSAAKTYDLEVWLPGQS 348

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +F+DF        +
Sbjct: 349 AYREISSCSNFVDFQARRMKARY 371


>gi|150387877|ref|YP_001317926.1| seryl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|166987307|sp|A6TJ99|SYS_ALKMQ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|149947739|gb|ABR46267.1| seryl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 11/184 (5%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     + + + +   +  G  E+  P + +    + +G+   + ++ 
Sbjct: 159 TGSRFTLYRGMAARLERALISFMLDLHTDEHGYTELLPPFMVNRASMIGTGQLPKFEEDA 218

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            ++     K     PT E  +T+I+R  I     LP  +      FR E     R   G+
Sbjct: 219 FKIP---QKDYFLVPTAEVPVTNIYRDDIIEGDQLPIKYVAYTPCFRSEAGSAGRDTRGL 275

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R  +F   +   F + PE S     K+  +  ++   LGL    +R  +G +G   + +
Sbjct: 276 IRQHQFNKVELVKF-VRPEDSYEELEKLTNNAEKVLQLLGLPYRIVRICTGDLGFTAAFK 334

Query: 210 FIVL 213
           + + 
Sbjct: 335 YDIE 338


>gi|333006955|gb|EGK26450.1| seryl-tRNA synthetase [Shigella flexneri K-218]
          Length = 430

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMIAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|190344834|gb|EDK36592.2| seryl-tRNA synthetase [Meyerozyma guilliermondii ATCC 6260]
          Length = 497

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 18  AEIASHKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A ++ H+++LR  G      +       Y     G      +           G   +  
Sbjct: 188 AALSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLHFLASNGYTPLQA 247

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPF 130
           P + + ++  ++ +   + +E+ ++ D +D+  +   + + +         +S    LP 
Sbjct: 248 PVMMNKEVMAKTAQLSQFDEELYKVIDGDDEKYLIATSEQPISAYHAGEWFESPEEQLPV 307

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +  +G+ R   F   +       PE S   +++M     + + 
Sbjct: 308 RYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPEKSWEEFDRMIGLSEKFYQ 366

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            LGL    +   SG +    + ++ + A
Sbjct: 367 SLGLPYRVVGIVSGELNNAAAKKYDLEA 394


>gi|126436034|ref|YP_001071725.1| glycyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|126235834|gb|ABN99234.1| glycyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 468

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 79/463 (17%), Positives = 152/463 (32%), Gaps = 60/463 (12%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVE 82
           L+ ++G I+  +K  + + PLG +  +N+           R   + +    +    +WV 
Sbjct: 20  LVYQSGEIYGGTKSAWDYGPLGVELKENIKRQWWRSVVTGRDDVVGLDSAIILPRQVWVA 79

Query: 83  SGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           SG  + +     E L    R+ +  +     E       +   K     P +    ++  
Sbjct: 80  SGHVEVFNDPLVECLNCHKRHRQDHLQEAYFE-------KRGAKDGLAGPDSVPMDEIAC 132

Query: 140 RDE-LRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIP 194
            D   + ++   R    ++K       T EG       +   +FV++  +          
Sbjct: 133 PDCGTKGQWTEPRDFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANVVTT---ARKK 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                G IG    +E         T+ F   +   F  PS   ++        +      
Sbjct: 190 PPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPSTAKEWHQYWIDTRLQWYVDL 249

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSAT 301
                +    E   D   +    S R +++ + F F              T + L   A 
Sbjct: 250 GIDRDNLRLFEHPKD---KLSHYSDRTVDIEYKFGFAGNPWGELEGVANRTDFDLSTHAK 306

Query: 302 FKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIW 340
             GAD           +   +     G  R + A +  S+                 +  
Sbjct: 307 HSGADLSFYDQATETRYTPYVIEPAAGLTRSLMAFLVDSYTEDEAPNAKGGVDKRTVLRL 366

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP K +++ +  H          + A L K   +V +DD G  IG ++   D +G 
Sbjct: 367 DPRLAPVKAAVLPLSRH-ADLSPKARDLAAELRK-NWNVEFDDAGA-IGRRYRRQDEIGT 423

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P  + V    ++D  V I+ R T  ++ ++L EV +Y + R  
Sbjct: 424 PYCITVDFDSLTDHAVTIRERDTMTQDRVALSEVSDYLAVRLK 466


>gi|6434818|gb|AAF08322.1|U31860_1 threonyl-tRNA synthetase [Streptococcus pyogenes]
          Length = 70

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 17 DAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
          D      +L L   MI  +  +G+  WLP G      +   I +++  +G   +  P L 
Sbjct: 1  DHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLA 58

Query: 76 SADLWVESGRYD 87
          S +L+  SG +D
Sbjct: 59 SVELYKTSGHWD 70


>gi|332759807|gb|EGJ90110.1| seryl-tRNA synthetase [Shigella flexneri 4343-70]
          Length = 430

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMIAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|332188256|ref|ZP_08389984.1| histidyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332011755|gb|EGI53832.1| histidyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 440

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 131/429 (30%), Gaps = 69/429 (16%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            + L     +            + +P  +   ++  S     D   KEM    DR    +
Sbjct: 25  AEVLRTFEQV----HELYAFQRLDLPVFEDTQVFARSIGETTDVVSKEMYTFPDRGGDML 80

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P     +   + +     +  P         FR E RP+ G  R R+F   DA    
Sbjct: 81  TLRPEFTAGIARAYLTEGW-QQYAPLKLVTSGPVFRYE-RPQKG--RYRQFHQIDAEILG 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGPIGGD------------ 205
                +      M     ++ H LG+             AE+     D            
Sbjct: 137 AAEPAADVELLVMAD---QLLHELGIAEGVTLQLNTLGDAETRDAWRDALVAHFEAHRDQ 193

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           LS + +V  +    ++  SKD  D PI     D D  ++          P A        
Sbjct: 194 LSEDSLVRLEKNPLRILDSKDPRDRPIADAAPDIDAYLT----------PEARAFFEAVT 243

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGK-----DHYVQMGS 316
              D+       +AR +        G  Y    +        GA G       +   + S
Sbjct: 244 AGLDAAGVAWTRNARLVR-------GLDYYRHTAFEFVTDRLGAQGTVLAGGRYDGLIES 296

Query: 317 YGIGAMRVV--AAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQVCRDACEKIYARLS 373
            G  A   V  AA +E       ++  +   P     ++ + A  ++       + A L 
Sbjct: 297 LGGPATPGVGWAAGVERLA----MLLDEPAKPVIDAVVVPMGAAAEL---RATGLVAELR 349

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G        G  +  + A A+  G    +I+G   +++ +V++K   TG +  + LE 
Sbjct: 350 RAGVATDMAFRGN-MKRRMAKANDQGASYALILGDDELANGQVQVKALATGEQATVPLES 408

Query: 434 VINYASHRF 442
           V        
Sbjct: 409 VSQSIFDLL 417


>gi|260945325|ref|XP_002616960.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238848814|gb|EEQ38278.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 457

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 6/180 (3%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
           Y     G      +           G + +  P + + D+  ++ +   + +E+ ++ D 
Sbjct: 178 YFLRKWGVFLNQALINYGLSFLYEKGYLPLQAPVMMNKDVMAKTAQLSQFDEELYKVMDG 237

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
           +D+  +   + + +         +S    LP  +      FR E     +  +G+ R   
Sbjct: 238 DDEKYLIATSEQPISAYHSGEWFESPAEQLPIRYAGYSSCFRREAGSHGKDAWGIFRVHA 297

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +       PE S   +++M  +    +  LGL    +   SG +    + +F + A
Sbjct: 298 FEKIE-QFVLTEPEKSWEEFDRMIANSEEFYQSLGLPYRVVGIVSGELNNAAAKKFDLEA 356


>gi|194435163|ref|ZP_03067396.1| seryl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194416601|gb|EDX32737.1| seryl-tRNA synthetase [Shigella dysenteriae 1012]
          Length = 430

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQMPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|146422756|ref|XP_001487313.1| seryl-tRNA synthetase [Meyerozyma guilliermondii ATCC 6260]
          Length = 497

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 18  AEIASHKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A ++ H+++LR  G      +       Y     G      +           G   +  
Sbjct: 188 AALSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLHFLASNGYTPLQA 247

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPF 130
           P + + ++  ++ +   + +E+ ++ D +D+  +   + + +         +S    LP 
Sbjct: 248 PVMMNKEVMAKTAQLSQFDEELYKVIDGDDEKYLIATSEQPISAYHAGEWFESPEEQLPV 307

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +  +G+ R   F   +       PE S   +++M     + + 
Sbjct: 308 RYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPEKSWEEFDRMIGLSEKFYQ 366

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            LGL    +   SG +    + ++ + A
Sbjct: 367 SLGLPYRVVGIVSGELNNAAAKKYDLEA 394


>gi|145628725|ref|ZP_01784525.1| histidyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|144979195|gb|EDJ88881.1| histidyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
          Length = 423

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 143/429 (33%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-------------SIPMRAESGPIGGDLS 207
            F    PE        + +   R++  LG+                     S  +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSDLVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++  A +     + +  
Sbjct: 187 HQDLMNDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGATLAAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +            QF  AD  G  L +++G     + +V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSSGNFKKQFKRADKSGATLALVIGESEAQNKQVVVKHLQGGTDQQTLDLVN 414

Query: 434 VINYASHRF 442
           +I+Y   +F
Sbjct: 415 IIDYLQTQF 423


>gi|269792616|ref|YP_003317520.1| seryl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100251|gb|ACZ19238.1| seryl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 427

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 12/208 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G IE+S P L S+     +G+   + +++ R A   +  +
Sbjct: 168 LGARLERALVQYMLDLHTSNGFIEVSPPFLVSSATMTGTGQLPKFSEDLYRCA---NDDL 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++    I    +LP  +      FR E     R   G++R  +F   + 
Sbjct: 225 WLIPTAEVPLTNLHSGEILDEDSLPLHYTAHTPCFRREAGSYGRDVKGMLRVHQFPKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                 PE S      +  S   +   LGL    +   +G +G   S     E  + +  
Sbjct: 285 VKI-CRPEESYDELESLTASAESVLKGLGLPYRVVCLCTGDMGFASSKTYDIEVWLPSQG 343

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS 244
              ++    +  DF     NT +     
Sbjct: 344 CYREISSCSNCEDFQARRMNTRYRPKEG 371


>gi|302534311|ref|ZP_07286653.1| glycyl-tRNA synthetase [Streptomyces sp. C]
 gi|302443206|gb|EFL15022.1| glycyl-tRNA synthetase [Streptomyces sp. C]
          Length = 460

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 68/451 (15%), Positives = 144/451 (31%), Gaps = 74/451 (16%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +         + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWKAMVTGREDVVGLDSSVILAPEVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT-FYQIQLKFRDELRPRFG-VMRSREF 155
             + +       H E   +        +  LP      I            G     ++F
Sbjct: 93  SCHKRQ---RADHLEEAYE------AKHGRLPENGLADINCPHC----GVKGQFTEPKQF 139

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGDLS 207
                     T +    +Y +   +   IF    +    ++  S          +G    
Sbjct: 140 SGMLETHLGPTQDTGSKAYLR-PETAQGIFTNFAM----VQTSSRKKPPFGIAQMGKSFR 194

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E         T+ F   +   F  P E     D       +++    Y           
Sbjct: 195 NEITPGNFIFRTREFEQMEMEFFVKPGE-----DDQWQEYWMQERWNWYRGLGLREENMR 249

Query: 268 FDSLPENK--RVSARGIEVGHIFYFG-------------TKYSLPM-------SATFKGA 305
           +   P  K    S R  ++ + F FG             T Y L            +   
Sbjct: 250 WYDHPAEKLSHYSKRTADIEYRFNFGGSEFSELEGVANRTDYDLKAHSAASGTDLVYYDQ 309

Query: 306 DGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISL 351
           + ++ Y   +     G  R + A +  ++                 + +   +AP K+++
Sbjct: 310 EAQEKYTPYVIEPAAGVNRAMLAFMLDAYVEDEAPNAKGAMEKRTVMRFDPRLAPVKVAV 369

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + + + +       + + A L K   ++ +DD G  IG ++   D +G P  V V    +
Sbjct: 370 LPL-SRNANLSPKAKGLAADLRK-NWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTL 426

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            D+ V ++ R T  +E +SL+++ +Y   R 
Sbjct: 427 DDNAVTVRERDTMKQERVSLDQIQSYLGSRL 457


>gi|241889715|ref|ZP_04777013.1| glycyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863337|gb|EER67721.1| glycyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 457

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 114/350 (32%), Gaps = 69/350 (19%)

Query: 105 IYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++  +S  + LPF   QI   FR+E+ P   + R+RE         
Sbjct: 165 YLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRTRE--------- 215

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                F ++ L+           G +L             +   
Sbjct: 216 ---------------------FEQMELEFFCE------PGTELDW--HTTWKNNCEKFLL 246

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                   I   + D +++   ++        +            +      R      +
Sbjct: 247 DLGMTKENIRLRDHDKEELSHYSNATTDIEFKFPFGW-------GELWGIASRTDYDLKQ 299

Query: 284 VGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----- 337
             H+ + G         T++  +  +          +G  RV+ A +  +++ +      
Sbjct: 300 --HMEHSGQD------LTYQDLSTNEKFIPYCIEPSVGVDRVLLAFLCDAYNEEEVGEND 351

Query: 338 ----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               + +  ++AP+K +++ +        D   ++Y +L  V   V +D+ G  IG ++ 
Sbjct: 352 TRTVLKFHPALAPYKAAILPLSKK---LSDKAVEVYQQL-AVDFMVDFDETG-SIGKRYR 406

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D +G P  +    +  +D  V ++ R T  +  + + E+  Y   +  
Sbjct: 407 RQDEVGTPFCITYDFESENDGMVTVRDRDTMEQTRIPITELKQYIEEKIK 456


>gi|321441283|gb|ADW85056.1| glu- + pro-tRNA synthetase [Apoda biguttata]
          Length = 134

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +   +  +  YV   S+GI   R +  ++    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSKIFDVIYDDPETQEKKYVYQNSWGIT-TRTIGVMVLVHGDNR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  ++ ++             +   D+C  + A L   G     D       
Sbjct: 74  GLVLPPRIADIQVIVVPCGITASSTPEDRKSLYDSCSSLVAELVAAGLRADGDYRENYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|312128024|ref|YP_003992898.1| seryl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778043|gb|ADQ07529.1| seryl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 420

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P L +    + +G+   + ++  +  D 
Sbjct: 164 FYRGLGARLERALINFMLDLHIEKHGYTELFPPFLVARKSMIGTGQLPKFEEDAFKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I    +LP  +      FR E     +   G++R  +F
Sbjct: 223 ---DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    +   SG +G   +  + + 
Sbjct: 280 NKVELVKF-AKPEDSYDELEKLTADAEDVLKELGLPYRVVLLCSGDLGFSSAKTYDIE 336


>gi|310658348|ref|YP_003936069.1| histidyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825126|emb|CBH21164.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Clostridium sticklandii]
          Length = 430

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 136/443 (30%), Gaps = 69/443 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G    LP  Q+  D++   I +   + G   +  P ++ AD L V+SG      K++  
Sbjct: 12  PGFMELLPNEQRIFDDIATKILKVYEKNGCYPIDTPVIEKADVLLVKSG--GETEKQVYA 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +    +                HI +    PF  YQ+   +R E R + G  R REF
Sbjct: 70  FQ-KGKNDLALRFDLTVPFARYVAQHI-NELEFPFKRYQLGKVYRGE-RNQRG--RYREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------DLS 207
              D    +       +    +     + F  + L +   +  +  I          + S
Sbjct: 125 YQLDIDVINKDKLSVDNDAW-VISLASQAFKEIKLPNYKFQISNRKILSGIFEYLQIENS 183

Query: 208 HEFIVLAD----------TGETQVFCSKDFMDFPIPSENTD---FDDIISLNSIVEQWTA 254
            E + L D            E +    ++   F     + D      I  L +     T 
Sbjct: 184 FETMNLIDKYDKMPTNEFKAELEKLIGEEKSSFINKIMSIDGSSVQIINQLKAFNINETY 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPM-------------S 299
                      K+ D L  +++     +++  G  +Y GT +   +              
Sbjct: 244 AEGVNEIARVVKMLDILKVDEKEYDINLKIIRGLDYYTGTVFETKLIGNESYGSICSGGR 303

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--------SHDGKGIIWPDSVAPFKISL 351
                 +  D  +      IG  R+   + E         +     II P          
Sbjct: 304 YDNLAENYTDTVLPGVGISIGLTRLFFVLQEIGFIDTYNLNRSDDFIILPL--------- 354

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                      D C  I  +L   G           +  +   A+ L     +IVG + V
Sbjct: 355 -------GDTMDYCSIILDKLLANGSRASIYFDDASLKKKLKYANNLKIQKVIIVGEEEV 407

Query: 412 SDSKVEIKHRLTGIREDMSLEEV 434
            +  V+IK  L+G  + + ++++
Sbjct: 408 KNKIVKIKDMLSGEEKIIKIDDL 430


>gi|319740181|gb|ADV60384.1| glu- + pro-tRNA synthetase [Quentalia chromana]
          Length = 134

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +  A+ ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVYDDAETQEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++             +   D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRIAEIQAIVVPCGVTASSSAEERKKLIDSCKALVDLLVAAGVRSEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|294781766|ref|ZP_06747099.1| serine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294481876|gb|EFG29644.1| serine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 421

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 14/224 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     + + + +      G  E   P +  A++   +G+   + ++M
Sbjct: 158 SGSRFVLYRGAAARLERALISFMLDTHTLEHGYTEHITPFMVKAEVCEGTGQLPKFEEDM 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     R   G+
Sbjct: 218 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGRDVKGL 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LS 207
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G     +
Sbjct: 274 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 332

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           ++  V   +       S         +        ++  S    
Sbjct: 333 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYKVTNGSEFCH 376


>gi|170754615|ref|YP_001779642.1| seryl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|229559899|sp|B1IDV4|SYS_CLOBK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169119827|gb|ACA43663.1| seryl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V +   +    + G  E+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERAVISYFLDTHTEKHGYTEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEILKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYEELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDAKAKPQYVHT 383


>gi|116490520|ref|YP_810064.1| seryl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|290889920|ref|ZP_06553007.1| hypothetical protein AWRIB429_0397 [Oenococcus oeni AWRIB429]
 gi|122277293|sp|Q04GM3|SYS_OENOB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116091245|gb|ABJ56399.1| seryl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|290480530|gb|EFD89167.1| hypothetical protein AWRIB429_0397 [Oenococcus oeni AWRIB429]
          Length = 439

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 7/162 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  R G  E+  P + + +    +G++  +  +   +    +++M 
Sbjct: 181 GARLERAVYNFMLDEHRREGYTELLTPYMVTNESMYATGQFPKFVDDAYEVG--KNQSMT 238

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +  R  +     LP     +   FR E     +   G++R  +F   +  
Sbjct: 239 MIPTAEVALVNWRRDEVLDESELPLYITALSPAFRQEAGAAGKDTRGLIRLHQFNKVEMV 298

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            F   PE S +   KM V    I  +L L    +R  +G +G
Sbjct: 299 KF-TKPEDSYNELEKMTVDAENILQKLELPYHVIRLSTGDMG 339


>gi|319740171|gb|ADV60379.1| glu- + pro-tRNA synthetase [Nataxa flavescens]
          Length = 134

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
           S R ++     + G  +S      +   D ++       S+GI   R +  ++    D K
Sbjct: 15  SGRAVQGATSHHLGQNFSKMFEIVYDDPDTQEKNYVFQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-----IKAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++        + D+     D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRVAEIQAIVVPCGITASSSADERXSLIDSCKGLVDDLLAAGVRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|311744086|ref|ZP_07717892.1| glycyl-tRNA synthetase beta subunit [Aeromicrobium marinum DSM
           15272]
 gi|311313216|gb|EFQ83127.1| glycyl-tRNA synthetase beta subunit [Aeromicrobium marinum DSM
           15272]
          Length = 462

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 64/448 (14%), Positives = 140/448 (31%), Gaps = 66/448 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+         +     + +    +    +W  SG   ++     E L
Sbjct: 33  WDYGPLGVELKENIKRQWWRTMVQGRDDVVGLDSSVVLPPAVWEASGHLSAFVDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF---YQIQLKFRD-ELRPRFGVM 150
               R  +  +     E       +  +     +            K +  E +   G++
Sbjct: 93  SCHRRYRQDHLQEAYAE-------KKGLDDPDAVGMDLLVCANCGTKGQWTEPKMFNGLL 145

Query: 151 RSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           ++    ++ A     L PE ++  +                         G IG    +E
Sbjct: 146 KTHLGPVESAEGLHYLRPETAQGIFVNFAQVMTS-------SRRKPPFGIGQIGKSFRNE 198

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                    T+ F   +   F  P  + +  +      +        AA +    E    
Sbjct: 199 ITPGNFIFRTREFEQMEMEYFVAPGADEEAHEYWLGERMRWYTDLGIAADNLRFFEH--- 255

Query: 270 SLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GK 308
              +    + R +++ + F F              T + L   ++  G D        G 
Sbjct: 256 PAEKLSHYAKRTVDIEYRFGFQGSEWGELEGVANRTDFDLSTHSSHSGKDLRYFDQESGD 315

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIK 355
             +  +     G  R + A +  ++                 +     +AP K++++ + 
Sbjct: 316 RWFPYVIEPAAGVNRSMMAFLVDAYAEDEAPNSKGGVDTRTVLRLDPRLAPCKVAVLPL- 374

Query: 356 AHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           + ++    A   +   L   G  +V +DD    IG ++   D +G P  V V    + D 
Sbjct: 375 SRNEQLSPAARSLATELR--GYWNVDFDDSAA-IGKRYRRQDEIGTPFCVTVDFDTLDDQ 431

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V I+ R +  +E ++L +V  + + R 
Sbjct: 432 AVTIRERDSMQQERVALTQVREWLAARL 459


>gi|217316809|gb|ACK37810.1| putative glutamyl-prolyl tRNA synthetase [Aegla alacalufi]
          Length = 134

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F+  +  +  +    S+G+   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFDIIFEDPETNQKKFCYQNSWGLT-TRTIGVMVMVHGDNK 73

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           G++ P   A  ++ ++ +               + C+K+   L         D   
Sbjct: 74  GLVLPPRAASVQVIIMPVGITAKSLEQDKTNLVEECKKLERELVSRDVRARCDIRD 129


>gi|117618684|ref|YP_856296.1| histidyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166227941|sp|A0KJ45|SYH_AERHH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|117560091|gb|ABK37039.1| histidyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 425

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 135/441 (30%), Gaps = 56/441 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  I+R+     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPEQSPVWQKVEQILRQVVASYGYSEVRMPIVEQTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLSLRPEGTASCVRAGIEHGLLYNQE-RRMWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F +           + +   R++   G+    +  +   +G        
Sbjct: 122 YRQFHQFGVELFGINGPDIDAE---LIMLTHRLWRLFGISE-HVTLQLNTLGQSSERAAY 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             A     + +  +   +      +     + S +  V+          D   E+     
Sbjct: 178 RDALVAYLEQYKDQLDEESQRRMYSNPLRVLDSKDEKVQAILVGAPRLFDHLGEESLAHF 237

Query: 272 PENKR---VSARGIEVGHIFYFGTK-YSLPMSATFKGADGKD------------------ 309
              KR    +    EV      G   Y+L +      + G                    
Sbjct: 238 EGLKRLLESAGIQYEVNERLVRGLDYYNLTVFEWVTNSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 310 HYVQMGSYGIGAMRVVAAV--IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                  + +G  R+V  +  +E + D +               + +    +    A  +
Sbjct: 298 QPTPAVGFAMGMERLVLMLETLELNGDIR-----------PAVDVYLAMVGEGTEQAGFQ 346

Query: 368 IYARLSKVGCDVFWDDM------GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH- 420
           +  RL     D   D        G     Q   AD  G  + +I+G   V + ++ IK+ 
Sbjct: 347 LAERLR----DALPDLRLMSHCGGGNFKKQLKRADKSGAAIALILGETEVQNGEITIKYL 402

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R    ++ ++++  I   + +
Sbjct: 403 RGQAEQQTVTVDAAIALLAAK 423


>gi|294651486|ref|ZP_06728799.1| histidine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822636|gb|EFF81526.1| histidine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 430

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 139/442 (31%), Gaps = 53/442 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP    A  ++   +    +  G  ++ +P ++   L+  +     D   KEM 
Sbjct: 8   KGFNDILPTQTAAWRSLEQQLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMY 67

Query: 95  RLADRN--DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+    +++   P            H       P  +Y +   FR E +P+ G  R 
Sbjct: 68  TFFDKGTPPESLTLRPEGTAGCVRAMLEHNLLRGAAPRVWY-VGPMFRYE-KPQKG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F      +F +           M     R++ R+G+    +R E   +G     E   
Sbjct: 124 RQFHQFGVETFGVATPDIDAEIILM---TARLWKRMGMAE-NVRLELNTLG-----ETDE 174

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNEKLFDS 270
            A+     V       D                  +S +E           +H+    DS
Sbjct: 175 RAEYRAALVEFLNQHKDQLDEDSQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDS 234

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI----------- 319
           L   +++     + G  F    K    +   +     +     +GS G            
Sbjct: 235 LNHFQQLQQYLTDAGVEFVINQKLVRGLDY-YNKTVFEWTTTMLGSQGTVCAGGRYDGLV 293

Query: 320 -----GAMRVVAAVIESSHDGKGIIWPDSVAP------FKISLINIKAHDQVCRDACEKI 368
                   + V AV  +    + ++  + VA        ++ L+   A+        E+I
Sbjct: 294 GQLKGKPDQSVPAVGFAMGMERLLLLLEQVAQNKDTRDCEVFLLAEPAYQAKALVLAEQI 353

Query: 369 YARLSKVGCDVFWDDMGEQIGSQ------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +L      +       + GSQ         AD  G    VI+G +     ++ +K   
Sbjct: 354 RDQLEAANSTIRL-----KTGSQGSMKSQMKKADQSGAVYAVILGEREWDSQQLLVKELA 408

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           T  +  +SL E+  +   +F  
Sbjct: 409 TAEQSQVSLAELAPFFIEKFKQ 430


>gi|258510034|ref|YP_003183468.1| seryl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476760|gb|ACV57079.1| seryl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +    R G  EM    + + +  + +G    +G EM ++ 
Sbjct: 163 FVLYKGLGARLERALANFMLDFHVERHGYTEMFPAFIANEESLIGTGNLPKFGDEMFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+ +R  I S   LP  F      FR E     +   G++R  
Sbjct: 222 --EGLPYYLIPTAEVPLTNYYRDEILSADQLPVKFAGYSACFRSEAGSAGKDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +  +  L PE S     ++      +   L L    +   +G +G   +     E
Sbjct: 280 QFQKVELVNLCL-PEQSYEVLEQLTREAEAVLEALQLPYRRIEICTGDLGAKDAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + A     ++    +F D+     N  F
Sbjct: 339 VWLPAQNRYREISSCTNFEDYQARRANLRF 368


>gi|34557266|ref|NP_907081.1| seryl-tRNA synthetase [Wolinella succinogenes DSM 1740]
 gi|46577165|sp|Q7M9J5|SYS_WOLSU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|34482982|emb|CAE09981.1| SERYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 428

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 19/223 (8%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM- 104
           G +    + + + +  +  G  E+  P + + +  + +G+   +  ++ ++++  ++   
Sbjct: 170 GARMSRALISYMLDFNHSRGFEEVVTPVIVNRETLLGTGQLPKFENDLFKISEVIEEEQG 229

Query: 105 ---------IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                       PT E  +T+++R  I  +  LP         FR E     R   G++R
Sbjct: 230 GEKGRGHELYLIPTAEVTLTNLYRDEIIPHDELPLLLTAHTPCFRKEAGSAGRDTRGIIR 289

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
             +F   +  +    PE S     KM      +   LGL    ++   G +G   S+   
Sbjct: 290 QHQFDKVELVAL-TKPEESDAIQQKMIDCASDLLSSLGLPHRLVQLCGGDLGFGASNTVD 348

Query: 209 -EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            E  +       ++    +  DF        + D    N +V 
Sbjct: 349 IEVWLPGQNCYREISSISNTRDFQARRAMIRYKDEDKKNRLVH 391


>gi|288927731|ref|ZP_06421578.1| histidine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330565|gb|EFC69149.1| histidine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 456

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 159/458 (34%), Gaps = 62/458 (13%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEML 94
            KG   + P      + +   I++     G  ++  P++++   L  + G  +   K + 
Sbjct: 7   PKGTRDFSPAEMAKRNYIFDTIKDVYALYGYQQIETPSMETLQTLMGKYG--EEGDKLLF 64

Query: 95  RLADRND-------KAMI------YGPTHEE-----VMTDIFRSHIKSYRN---LPFTFY 133
           ++ +  D       +  +            E      +T  F  ++  +R+   +PF  Y
Sbjct: 65  KILNSGDFIGKVPAEEFVSDNVLKLAAKICEKGLRYDLTVPFARYVVMHRDELQMPFKRY 124

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           QIQ  +R + RP+ G  R REF   DA         ++    ++  +   +F + G+ ++
Sbjct: 125 QIQPVWRAD-RPQKG--RYREFYQCDADVVGSDSLLNEVELVQIIDT---VFTKFGI-NV 177

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            ++  +  I   ++          +  V   K               + IS +++ +   
Sbjct: 178 QIKLNNRKILAGIAEYIGQPDKIVDITVAIDKLDKIGVEAVNAEMLANGISQDAVDKLQP 237

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIE-----------VGHIFYFGTKYSLPMSATF 302
               + ++V   +          +  +G+E           VG         +L     +
Sbjct: 238 ILTMSGTNVEKLETIAQTIATSEIGVKGVEETRFILEKIAAVGLKNELQLDLTLARGLNY 297

Query: 303 KGA---DGKDHYVQMGSY----------GIGAMRVVAAVIESSHDG------KGIIWPDS 343
                 + K   V +GS           GI  M  ++ V  S            +     
Sbjct: 298 YTGAIFEVKAKDVAIGSITGGGRYDNLTGIFGMPGLSGVGISFGADRIYDVLNTLDLYPQ 357

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
            A     ++ I    +   D C  I +++   G  V       ++  Q A A+  G P  
Sbjct: 358 NATQGTEVLFINFG-ETESDYCLPIASQVRAAGISVELYPDCAKMKKQMAYANAKGIPFV 416

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           V+ G   +S  KV +K+ LTG ++ +S EE+I   + +
Sbjct: 417 VLAGESEISQGKVTLKNMLTGDQQLVSAEELIAKITSK 454


>gi|153939104|ref|YP_001389385.1| seryl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|166219867|sp|A7G9C5|SYS_CLOBL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|152935000|gb|ABS40498.1| serine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295317492|gb|ADF97869.1| serine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 426

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V +   +    + G  E+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERAVISYFLDTHTEKHGYTEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEILKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYEELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDAKAKPQYVHT 383


>gi|330823695|ref|YP_004386998.1| Seryl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329309067|gb|AEB83482.1| Seryl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 438

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 86/254 (33%), Gaps = 21/254 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLG--QKALDNVNAIIREEQN-RTGAIEMSVP 72
           +D       L L   M  + S G    +  G   +    +   + + Q    G  E  VP
Sbjct: 142 KDHVDLGAPLGLDFDMGAKLS-GSRFTVMKGPIARLHRALAQFMLDVQTGEHGYTECYVP 200

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            + +AD    +G+   +  ++              +D  +   PT E  +T+I R  + +
Sbjct: 201 YIVNADSLRGTGQLPKFEGDLFAAKKGGQEGEPVPDDAQLYLIPTSEVPLTNIVRDEVLA 260

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + P+ S  +  +M   
Sbjct: 261 ESDLPIRLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKIEMVQI-VHPDKSYEALEEMTRH 319

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSEN 236
              I  +LGL    +   +G +G   +     E  + A     ++    +   F      
Sbjct: 320 AEAILQKLGLPYRVVSLCTGDMGFGSAKTYDLEVWLPAQGTYREISSVSNCEAFQARRMQ 379

Query: 237 TDFDDIISLNSIVE 250
             F +    N +V 
Sbjct: 380 ARFKNAQGRNELVH 393


>gi|145589471|ref|YP_001156068.1| histidyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047877|gb|ABP34504.1| histidyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 442

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 148/432 (34%), Gaps = 56/432 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP       +++ ++R+     G   +  P +++  ++    G   D   KEM  
Sbjct: 21  GMNDLLPADAAHWAHLDHVLRDLTRAYGYEFLRTPIVEATAVFQRGIGEVTDIVEKEMYS 80

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFGVMRS 152
             DR N + +   P   E    + RS I++      P   +     FR E RP+ G  R 
Sbjct: 81  FEDRLNGEQLTLRP---EGTAAVVRSVIENNLLYEGPKRLWYTGPMFRHE-RPQRG--RY 134

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPI 202
           R+F      +              M     R++  LGLK + +          RAE    
Sbjct: 135 RQFHQFGIEALGFAGPDIDAEIILMGQ---RLWDELGLKGVRLEINSLGQANERAEHRAA 191

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +     D  E             + S+N +   +I     +  +    +     
Sbjct: 192 LIKYFEKHQSQLD--EDSRRRLLTNPLRILDSKNPEMQTLIDGAPQLLDFLGEESLKHFN 249

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYGI 319
             + L  +     +++ R +  G  +Y  T +   +  + A    A G  +   +   G 
Sbjct: 250 AVQALLKANNIPCKINPRLV-RGLDYYNLTVFEWVTEELGAQGTIAGGGRYDPLIERMGG 308

Query: 320 GA---------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            A         M  V  +++ S        P++ A  +  +  +    +    A   I  
Sbjct: 309 KAAPACGWAMGMERVLELMKVSGS-----LPEAQA--QCDIFVLHQGGET-LTAAMIIAE 360

Query: 371 RLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLT 423
           RL   G D       D  G+    +     AD  G    VI+G   ++ ++ ++K  R T
Sbjct: 361 RLRSAGIDTILFCPPD--GQSASFKSQMKKADASGAAFAVIIGPDELAKNEAQLKDLRGT 418

Query: 424 GIREDMSLEEVI 435
           G ++ + L+EV+
Sbjct: 419 GEQKSVPLDEVL 430


>gi|321441287|gb|ADW85058.1| glu- + pro-tRNA synthetase [Archiearis parthenias]
          Length = 134

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S +GI+     + G  +S      +   D  +  +V   S+G+   R +  ++    D +
Sbjct: 15  SGKGIQGATSHHLGQNFSKMFEVVYDDPDTHEKAFVYQNSWGLT-TRTIGVMVMVHGDNR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++         +   +   D+C+ +       G     D       
Sbjct: 74  GLVLPPRVADVQVIVVPCGITASSTQEERKTLIDSCKALVNDFIDAGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|148360873|ref|YP_001252080.1| seryl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|296106062|ref|YP_003617762.1| seryl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166222738|sp|A5IH84|SYS_LEGPC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148282646|gb|ABQ56734.1| seryl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|295647963|gb|ADG23810.1| seryl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 426

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 83/243 (34%), Gaps = 19/243 (7%)

Query: 20  IASHKLMLRT--GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           + SH  +      M    +    G    +  G  A     +   + +    + G  E+ V
Sbjct: 136 VKSHDELGEALGQMDFALAAKITGSRFVVMKGHLARLHRALIQFMLDIHIQQHGYQEIYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +AD  + +G+   +  ++ +L    D       T E  +T+  R  I S   LP  
Sbjct: 196 PYIVNADSLLGTGQLPKFEADLFKLT--GDNGYYLTSTSEIPVTNTVREMILSAEQLPIR 253

Query: 132 FYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +      FR E     +   G++R  +F   +   +   PE S ++  ++      I  R
Sbjct: 254 YVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVE-LVWITKPEDSYNALEQLTQHAEVILQR 312

Query: 188 LGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           L L    +   +G IG   +     E  + +     ++    +   F        F +  
Sbjct: 313 LNLPYRVVALCTGDIGAGSAKTYDLEVWLPSQNTYREISSCSNMEAFQARRMKARFRNPD 372

Query: 244 SLN 246
           +  
Sbjct: 373 TNE 375


>gi|321441297|gb|ADW85063.1| glu- + pro-tRNA synthetase [Chelepteryx collesi]
          Length = 134

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R ++     + G  +S      +   D ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAVQGATSHHLGQNFSKMFEIVYDDPDTQEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVCR-----DACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++   I A           D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRVAEIQAIVVPCGITASSSAEERKGLIDSCKGLVDDLIAAGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|118587514|ref|ZP_01544938.1| seryl-tRNA synthetase [Oenococcus oeni ATCC BAA-1163]
 gi|118431965|gb|EAV38707.1| seryl-tRNA synthetase [Oenococcus oeni ATCC BAA-1163]
          Length = 439

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 7/162 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  R G  E+  P + + +    +G++  +  +   +    +++M 
Sbjct: 181 GARLERAVYNFMLDEHRREGYTELLTPYMVTNESMYATGQFPKFVDDAYEVG--KNQSMT 238

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +  R  +     LP     +   FR E     +   G++R  +F   +  
Sbjct: 239 MIPTAEVALVNWRRDEVLDESELPLYITALSPAFRQEAGAAGKDTRGLIRLHQFNKVEMV 298

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            F   PE S +   KM V    I  +L L    +R  +G +G
Sbjct: 299 KF-TKPEDSYNELEKMTVDAENILQKLELPYHVIRLSTGDMG 339


>gi|332184775|gb|AEE27029.1| Histidyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 421

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 147/432 (34%), Gaps = 50/432 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G    LPL       + + I+   +R    E  +P ++ ++L+  S G   D   KE   
Sbjct: 9   GFNDILPLDSYKWQFLESKIKLILDRYNYSETRLPVVEKSELFHRSVGETSDIVSKETYD 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P        +   +  + R      +     FR E RP+ G  R R+F
Sbjct: 69  FQDRNGDSLTLRPEGTAGCVRMVIENNLATRGQVQKLWYCGPMFRYE-RPQKG--RYRQF 125

Query: 156 LMK--DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-HEF-- 210
                +AY FD      +     +      +F  LG+    +  E   +G  L+  E+  
Sbjct: 126 YQLGVEAYGFDGIAIDLE-----ILAITWSLFKELGISEY-VTLELNSLGSSLNRQEYTQ 179

Query: 211 -------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                     A+  E  +          + S+      I++    +  +           
Sbjct: 180 ALLEYLKPYHAELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLIDFIDEDLRLRFKQ 239

Query: 264 NEKLFDSLP---ENKRVSARGIEV--GHIF-----YFGTKYSLPMSATFKG--ADGKDHY 311
             +  D+L    +  +   RG++   G +F       G++ ++     +     +     
Sbjct: 240 TRQYLDALGVVYKINQNLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDSLIENLGGQK 299

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                + IG  R++  ++E          P+      +  +   A         E I   
Sbjct: 300 TAAIGFAIGMERLLI-LLEDLGK-----LPNQDNACDVFFVLDSAQLYQSLAIVENIRQE 353

Query: 372 LSKVGCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRE 427
           L ++       DM  + G  +  F  AD  G  + +I+G   + +    IK  +  G ++
Sbjct: 354 LPQLKI-----DMDLKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNGEQQ 408

Query: 428 DMSLEEVINYAS 439
            ++ +E+IN+  
Sbjct: 409 QVAFDELINFLE 420


>gi|255066456|ref|ZP_05318311.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049336|gb|EET44800.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 310

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADL 79
             E+  P +   +L
Sbjct: 289 YKEVKTPQIMDKNL 302


>gi|237738609|ref|ZP_04569090.1| seryl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229424092|gb|EEO39139.1| seryl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 421

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 14/224 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     + + + +      G  E   P +  A++   +G+   + ++M
Sbjct: 158 SGSRFVLYRGAAARLERALISFMLDTHTLEHGYTEHITPFIVKAEVCEGTGQLPKFEEDM 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     R   G+
Sbjct: 218 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGRDVKGL 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LS 207
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G     +
Sbjct: 274 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 332

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           ++  V   +       S         +        ++  S    
Sbjct: 333 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYKVTNGSEFCH 376


>gi|302409932|ref|XP_003002800.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261358833|gb|EEY21261.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 104

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 35 HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
          +S G   +LP G +  + +   +R +    G  E+  P +    LW  SG   +Y  +M 
Sbjct: 5  YSPGSPIFLPNGARIFNRLVDFLRRQYVSYGFEEVITPNIYKKSLWEVSGHLQNYADDMY 64

Query: 95 RLADR 99
           +  R
Sbjct: 65 TVTSR 69


>gi|161507947|ref|YP_001577911.1| seryl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048352|sp|A8YWU9|SYS_LACH4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|160348936|gb|ABX27610.1| Seryl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 435

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDL 206
           R  EF   +        E       K+  +   +  +LGL    +   +G          
Sbjct: 283 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSARTY 341

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|284990200|ref|YP_003408754.1| glycyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284063445|gb|ADB74383.1| glycyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 467

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 141/441 (31%), Gaps = 54/441 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+         Q R   + +    +    +WV SG    +      L 
Sbjct: 40  WDYGPLGTELKDNIKRQWWRAVVQGRDDIVGLDSSVILPRPVWVASGHVGVFTD---PLT 96

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
           +  +    +   H E   +  +           +      K    E R    ++++    
Sbjct: 97  ECQNCHKRFRADHLEEEFEARKGRAPENGLADISCPNCGTKGAWTEPRDFNMMLKTHLGP 156

Query: 157 MKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           ++D      L PE ++     +FV++  +   +G          G IG    +E      
Sbjct: 157 VEDESGLHYLRPETAQ----GIFVNFANV---MGAARKKPPFGIGQIGKSFRNEITPGNF 209

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              T+ F   +   F  P  +  +                    +  H E   +   +  
Sbjct: 210 IFRTREFEQMEMEFFVEPGTDEQWHQYWIDERTRWYTDLGIDPANLRHYEHPKE---KLS 266

Query: 276 RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHYVQM 314
             S R +++ + F F              T + L   +   GAD               +
Sbjct: 267 HYSTRTVDIEYRFGFQGSEWGELEGIANRTDFDLKTHSEHSGADLTYFDQASNTRWTPYV 326

Query: 315 GSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVC 361
                G  R + A +   +                 +     +AP K +++ + + +   
Sbjct: 327 IEPAAGLTRSLMAFLIEGYTEDEAPNAKGGVDTRTVLRLDPRLAPVKAAVLPL-SRNADL 385

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 + A+L +   +V +DD G  IG ++   D +G P  + V    ++D  V ++ R
Sbjct: 386 SPKARDLAAQLRQSW-NVDFDDAGA-IGRRYRRQDEIGTPFCLTVDFDTLTDDAVTVRER 443

Query: 422 LTGIREDMSLEEVINYASHRF 442
            +  +E + L++V  Y   R 
Sbjct: 444 DSMSQERVGLDQVETYLKTRL 464


>gi|262066815|ref|ZP_06026427.1| serine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379481|gb|EFE86999.1| serine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 421

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 14/224 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     + + + +      G  E   P +  A++   +G+   + ++M
Sbjct: 158 SGSRFVLYRGAAARLERALISFMLDTHTLEHGYTEHITPFMVKAEVCEGTGQLPKFEEDM 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     R   G+
Sbjct: 218 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGRDVKGL 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LS 207
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G     +
Sbjct: 274 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 332

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           ++  V   +       S         +        ++  S    
Sbjct: 333 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYKVTNGSEFCH 376


>gi|219853213|ref|YP_002467645.1| seryl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219547472|gb|ACL17922.1| tRNA synthetase class II (G H P and S) [Methanosphaerula palustris
           E1-9c]
          Length = 506

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 81/273 (29%), Gaps = 42/273 (15%)

Query: 26  MLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVES 83
           M+  G I H  S+G +   P   +       I+ EE   T G  EM  P L   ++W +S
Sbjct: 195 MIERGWIKHALSRGQWIHGPQSVQLFRAFEQIVMEEIITTLGFTEMIFPKLVPWEVWEKS 254

Query: 84  GRYDSYGKEMLRLADRNDKAMIY------------------------------GPTHEEV 113
           G       E+  +     +   Y                                     
Sbjct: 255 GHAKGVYPEIYYVCTPKTRDPAYWEEVGDYFKVTGKVPIDMIREKVDGPIGGLCYAQCPS 314

Query: 114 MTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
                +    +   LP   +       R E     G+ R  EF   +   +  TPE    
Sbjct: 315 FWPFVQGQTLASDCLPIRIFDRSGTSHRYESGGIHGIERVDEFHRIEIL-WLGTPEQVVE 373

Query: 173 SYNKMFVSYLRIFHR-LGLKSI------PMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           + +K+  +Y  +F   L L+           A+ G + G+  +E I   D  E  +  S 
Sbjct: 374 TADKLHAAYKHLFDEVLNLEWRSAKVTPWFMAQEGMLDGEGVNERIGTTDY-EAILPYSD 432

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
            +++F   S N D         +          
Sbjct: 433 SWLEFQNVSVNGDKYPKGFNVKVQTGKDCWSGC 465


>gi|161503911|ref|YP_001571023.1| seryl-tRNA synthetase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189083583|sp|A9MHZ1|SYS_SALAR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|160865258|gb|ABX21881.1| hypothetical protein SARI_02001 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 430

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEIRDHVTLGEMHSGLDFAAAVKLTGSRFVVMRGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDQLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  V A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWVPAQNTYREISSCSNIWDF 365


>gi|302871467|ref|YP_003840103.1| seryl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574326|gb|ADL42117.1| seryl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 420

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P L +    + +G+   + ++  +  D 
Sbjct: 164 FYRGLGARLERALINFMLDLHIEKHGYTELFPPFLVARKSMIGTGQLPKFEEDAFKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I    +LP  +      FR E     +   G++R  +F
Sbjct: 223 ---DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    +   SG +G   +  + + 
Sbjct: 280 NKVELVKF-AKPEDSYDELEKLTADAEDVLRELGLPYRVVLLCSGDLGFSSAKTYDIE 336


>gi|298243503|ref|ZP_06967310.1| histidyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297556557|gb|EFH90421.1| histidyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 438

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 140/450 (31%), Gaps = 62/450 (13%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR-YDSYG 90
            +  +G    LP  Q     V  + +E     G   +  P L+   L+   SG   D   
Sbjct: 5   FRALQGFRDVLPDEQPYWQYVEMVAQEIAELFGYRRIETPLLEETSLFRRTSGESSDIVS 64

Query: 91  KEMLRLADRNDKAMI-----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKFRDELR 144
           KEM    DR DK          P     +   +  H  S    P   Y +    FR + R
Sbjct: 65  KEMYSFDDRADKEGRSQNLSLRPEGTAGVVRAYLEHGMSRLPQPVKLYYLSEPMFRRD-R 123

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPI 202
           P+ G  R RE       +              M     + + RLGLK I ++  S   P 
Sbjct: 124 PQAG--RYREHHQFGCEALGENDPVLDAE---MIALLYQFYTRLGLKQINVQVNSIGDPE 178

Query: 203 GGDLSHE----------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           G     E              AD            +D   P +     +       + + 
Sbjct: 179 GRPQYIEKLREYYRPLLDTCCADCKVRFEKNPLRLLDCKEPQDQAKIANAPKTIDHLSES 238

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGA-DGKD 309
              + A    + E        N     RG++     +F F +++   +S    G  DG  
Sbjct: 239 AQQHFAALRRYLEAYGVPYEINPL-LVRGLDYYSHTVFEFISEFDSKLSINGGGRYDGLA 297

Query: 310 H-----YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                 +V    +G G  R    ++E    G     P +    ++ ++      +  +DA
Sbjct: 298 ELLGGAHVPGIGFGAGIERT---ILEMKRQGIE---PPAEKKAQVFVV-YFDRTEELKDA 350

Query: 365 CEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFP-----LQVIVGSKFVSDSKVE 417
              + ARL K G      + D           A +           +++ +  +++  + 
Sbjct: 351 AVHVTARLRKAGLRTEMSYGDRS-------RKAQMKQANNSQAEYAILIIADELANGVIT 403

Query: 418 IKH-RLTGI-----REDMSLEEVINYASHR 441
           IK  R  G      +  + L+E+  Y   R
Sbjct: 404 IKDMRAEGEDIDSKQTQVRLDELEAYFQQR 433


>gi|145631822|ref|ZP_01787581.1| histidyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144982541|gb|EDJ90095.1| histidyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 423

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 146/431 (33%), Gaps = 55/431 (12%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H+ ++  +  E  V      +D   P    +   ++     +  +    +         L
Sbjct: 187 HQDLMSDEEKERLVRNPLRILDTKNP----ELQKVLDHAPKLLDYLDDESRAHFEQLCSL 242

Query: 268 FDSLPENKRV---SARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMG 315
            D++     +     RG++     +F       G + ++     + G       H     
Sbjct: 243 LDAVGIQYEINPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSI 302

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARL 372
            + +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L
Sbjct: 303 GFAMGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGATLAAFELAEKVRSEL 354

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSL 431
                +            QF  AD  G  L +++G   V + +V +KH   G  ++ + L
Sbjct: 355 P--HLNTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDL 412

Query: 432 EEVINYASHRF 442
             +I+Y   +F
Sbjct: 413 VNIIDYLQTQF 423


>gi|73661318|ref|YP_300099.1| seryl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643864|sp|Q4A172|SYS_STAS1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|72493833|dbj|BAE17154.1| seryl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 427

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
                  G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++ 
Sbjct: 163 FVFLTGDGAQLERALMNYMITKHTTQHGYTEMMVPQLVNADSMYGTGQLPKFEEDLFKV- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               + +   PT E  +T+ +R+ I +   LP  F      +R E     R   G++R  
Sbjct: 222 --EKEGLYTIPTAEVPLTNYYRNEIIAPDVLPAKFTAQSACYRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +       PE S  +   M      I   LGL    +   +G IG   S  +
Sbjct: 280 QFDKVEMVRI-EKPEDSWQALEDMTHHAEAILEELGLPYRRVILCTGDIGFGSSKTY 335


>gi|86140926|ref|ZP_01059485.1| seryl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85832868|gb|EAQ51317.1| seryl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 422

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 94/317 (29%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     ++    G  E+ VP L +      +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALINYFLDKNTAAGYNEVQVPHLVNEASGFGTGQLPDKEGQMY- 221

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T++FR  +   ++LP T       FR E         G+ R
Sbjct: 222 --HIGIDDLYLIPTAEVPVTNMFRDSLLEEKDLPITCTGYTPCFRREAGSYGAHVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +        E S  + + M      I   L L    +R   G +G        
Sbjct: 280 LHQFDKVEIVRI-EKAEDSDAALDGMVEHVKMILDELKLPYRILRLCGGDLG-------- 330

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S   D                                 
Sbjct: 331 ----------FTSTLTYDFEVFSTAQDRW------------------------------- 349

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                     +E+  +  F T  +  +   ++ A+G       +    +   RV+A ++E
Sbjct: 350 ----------LEISSVSNFKTFQANRLKLRYRDAEGNKQLAHTLNGSSLALPRVLAGILE 399

Query: 331 SSHDGKGIIWPDSVAPF 347
           +     GI  P+ + P+
Sbjct: 400 NYQTEDGINIPEVLIPY 416


>gi|168181745|ref|ZP_02616409.1| histidine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796511|ref|YP_002864063.1| histidyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259511940|sp|C3KTB7|SYH_CLOB6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|182675096|gb|EDT87057.1| histidine--tRNA ligase [Clostridium botulinum Bf]
 gi|229261383|gb|ACQ52416.1| histidine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 415

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 119/422 (28%), Gaps = 29/422 (6%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q  KG    LP        +    R      G  E+  P  +  +L+        D   K
Sbjct: 4   QAPKGTKDLLPTESYKWQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F          P   Y      R E        R
Sbjct: 64  EMYTFEDKAGRSITLKPEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYE---NVQKGR 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLS 207
            R+        F             +    +RI+  LG++   +      IG        
Sbjct: 121 LRQHHQFGIEIFGAKEASVDAE---VISIPVRIYKELGVE--GVELNINSIGCPKCRKTY 175

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +E +    +      CS     F           + +   IV+              E  
Sbjct: 176 NEALKKYLSKNYDKLCSTCKTRFDKNPLRILDCKVDTCKEIVKDAPIILDYICGECKE-H 234

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-----GKDHYVQMGSYGIGAM 322
           F+SL     V     ++      G  Y       F   D     G  +   +   G  +M
Sbjct: 235 FESLKNYLDVLNINYKIDPFIVRGLDYYSKTVFEFITDDITICAGGRYDYLIEEIGGPSM 294

Query: 323 RVVAAVIESSH-----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             V   +           K I  P+      + L      D+   +   K+   L     
Sbjct: 295 PAVGFGMGMERLLLTLQEKAIEIPEE---AYVDLYLGNMGDKAKLEV-LKLAKELRDRHI 350

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D MG+ + +Q   A+ +G    +++G + ++  K  IK    G + ++ ++++   
Sbjct: 351 KCEIDHMGKSVKAQMKYANRIGAKYSMVLGEEELNTGKATIKKMEDGQQIEVDIKDIDTL 410

Query: 438 AS 439
             
Sbjct: 411 IK 412


>gi|262305737|gb|ACY45461.1| glu- + pro-tRNA synthetase [Euperipatoides rowelli]
          Length = 134

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+ G   + GT +S       +  +  +  +V   S+G+   R +  +     D  
Sbjct: 15  SGRAIQGGTSHHLGTNFSKMFDIVIEDPETNQKCFVYQNSWGLT-TRTIGVMCMVHGDNT 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHDQVC-RDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G+I P  VA  ++ +I       +   DQ    D C     +  K G     D       
Sbjct: 74  GLILPPRVASIQVIIIPCGITTSLPEADQKALLDKCTDYEQQFVKHGLRCKGDFRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|256419457|ref|YP_003120110.1| glycyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256034365|gb|ACU57909.1| glycyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 476

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 110/357 (30%), Gaps = 50/357 (14%)

Query: 93  MLR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M       + D   +  +   T + +  +           +PF   Q+   FR+E+  R 
Sbjct: 165 MFSTQLGSVTDEASEIYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQVGKAFRNEIVARQ 224

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R REF   +   F + P   K  +       L+    LG+     R           
Sbjct: 225 FIFRMREFEQMEMQFF-VRPGTQKEWFAYWKEERLKWHKSLGIDPDKYR----------- 272

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             F V                +FPI  +  +     + + +                E  
Sbjct: 273 --FHVHDKLAFYADAAEDIEYEFPIGFKEVEGIHSRTDHDLSRHQEFSRKKMQYFDTEIN 330

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            + +P     S     +G    F               DGK+             RVV  
Sbjct: 331 QNYIPYVIETS-----IGLDRMFLLTICDAYVEEDLTKDGKED-----------SRVV-- 372

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +  P  +AP K+++  +   D    +  +++  +        F+++    
Sbjct: 373 ----------MKLPAKLAPVKLAIFPLTKKD-GLPEIGKELMDKCKSA-FHCFYEEKDA- 419

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IG ++   D +G P  V +  +   D  V I++R    +E + +++V     ++ + 
Sbjct: 420 IGRRYRRQDAIGTPFCVTIDHQTKEDGTVTIRYRDNMEQERIPMDKVKELVLNKINE 476


>gi|54296544|ref|YP_122913.1| seryl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|67461683|sp|Q5X7N0|SYS_LEGPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|53750329|emb|CAH11723.1| hypothetical protein lpp0575 [Legionella pneumophila str. Paris]
          Length = 426

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 83/243 (34%), Gaps = 19/243 (7%)

Query: 20  IASHKLMLRT--GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           + SH  +      M    +    G    +  G  A     +   + +    + G  E+ V
Sbjct: 136 VKSHDELGEALGQMDFALAAKITGSRFVVMKGHLARLHRALIQFMLDIHIQQHGYQEIYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +AD  + +G+   +  ++ +L    D       T E  +T+  R  I S   LP  
Sbjct: 196 PYIVNADSLLGTGQLPKFEADLFKLT--GDNGYYLTSTSEIPVTNTVREMILSAEQLPIR 253

Query: 132 FYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +      FR E     +   G++R  +F   +   +   PE S ++  ++      I  R
Sbjct: 254 YVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVE-LVWITKPEDSYNALEQLTQHAEVILQR 312

Query: 188 LGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           L L    +   +G IG   +     E  + +     ++    +   F        F +  
Sbjct: 313 LNLPYRVVALCTGDIGAGSAKTYDLEVWLPSQNTYREISSCSNMEAFQARRMKARFRNPD 372

Query: 244 SLN 246
           +  
Sbjct: 373 TNE 375


>gi|282859535|ref|ZP_06268640.1| serine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282587763|gb|EFB92963.1| serine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 429

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 110/316 (34%), Gaps = 65/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + +    + +G+      +M  
Sbjct: 164 GAGFPIYIGKMARLQRALEAFFLDEARKSGYLEVQPPLVVNTASGLGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 224 ATVDD---LYLIPTAEVPVTNIFRDEILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    D  PE S  S  +M      +  +L L    ++      GGD+S    
Sbjct: 281 LHQFDKVEIVRID-KPEHSYDSLKEMLDHVEGLLKKLELPYHILKLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S   +    +S  S  E + A        H E      
Sbjct: 332 ----------FTSAICYDFEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHTED----- 376

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + IE+ H    G+  +LP                         R+VAA+IE+
Sbjct: 377 --------KKIELCHTLN-GSALALP-------------------------RIVAAIIEN 402

Query: 332 SHDGKGIIWPDSVAPF 347
           +   +G+  P ++ P+
Sbjct: 403 NQTPEGVRVPKALVPY 418


>gi|270261178|ref|ZP_06189451.1| seryl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270044662|gb|EFA17753.1| seryl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 430

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D ++  H  +     G+    +    G    +  GQ A     ++  + +    + G +E
Sbjct: 133 DFQVRDHVDLGEMAGGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L +      +G+   +G ++       +++        PT E  +T++ R  I  
Sbjct: 193 AYVPYLVNHATLYGTGQLPKFGDDLFHTKPLEEESDSSNYALIPTAEVPLTNLVRDEILE 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  ++   
Sbjct: 253 EESLPLKMTAHTPCFRAEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   L L    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLNLPYRKVLLCTGDMGFGACKTYDLEVWLPAQDTYREISSCSNMWDF 365


>gi|187776522|ref|ZP_02992995.1| hypothetical protein CLOSPO_00019 [Clostridium sporogenes ATCC
           15579]
 gi|187775181|gb|EDU38983.1| hypothetical protein CLOSPO_00019 [Clostridium sporogenes ATCC
           15579]
          Length = 426

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 80/229 (34%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V +   +    + G  E+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERAVISYFLDTHTEKHGYTEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEILKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYEELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  S  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQSRRANIRYKEDAKAKPQYVHT 383


>gi|157813056|gb|ABV81273.1| putative bifunctional aminoacyl-tRNA synthetase [Lithobius
           forticatus]
          Length = 134

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++     + G  +S      ++  D  +  +V   S+G+ + R + A+I    D  
Sbjct: 15  SGRGLQGATSHHLGQNFSKMFEILYEDPDTXEKKFVYQNSWGL-STRSIGAMIMVHADNN 73

Query: 337 GIIWPDSVAPFKISLIN----IKAHDQVCRDA---CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++  I     +   ++  +     CE+   RL+        D       
Sbjct: 74  GLVLPPRVACVQVXXIPCGITVNLKEEERKALINKCEEYEHRLNNEQVRCRGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|57339548|gb|AAW49761.1| hypothetical protein FTT1330 [synthetic construct]
          Length = 461

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D  
Sbjct: 196 KIAKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKL--EGDFE 253

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 254 YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 313

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                 T +  + S   +     ++  +L L    M+  +G +G         E  + + 
Sbjct: 314 LVHI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQ 372

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 373 NTYREISSCSWCGDF 387


>gi|71908597|ref|YP_286184.1| histidyl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|83305866|sp|Q47BR7|SYH_DECAR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71848218|gb|AAZ47714.1| histidyl-tRNA synthetase [Dechloromonas aromatica RCB]
          Length = 429

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 134/434 (30%), Gaps = 42/434 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +  +     IR      G   + +P ++   L+  + G   D   K
Sbjct: 6   QAVRGMNDVLPDEAEFWELFEDTIRSWLKGYGYRPIRMPIVEPTPLFKRAIGEVTDIVEK 65

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D  N +A+   P            H  + R      Y I   FR E RP+ G  
Sbjct: 66  EMYSFVDGLNGEALTLRPEGTAGCVRAVIEHNLAARQT-QRLYYIGQMFRHE-RPQKG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----------G 200
           R R+F      SF +           M +   R++  LGL  I ++  S           
Sbjct: 122 RYRQFHQVGVESFGMAGPDIDAE---MILMGARLWADLGLDGIELQLNSLGQPEERALHR 178

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E   L D    +   +         +         +   I        A   
Sbjct: 179 AALITYFEENAELLDEDAKRRLHTNPLRILDTKNPAMQELCAAAPKLIDYLGAESLAHFE 238

Query: 261 DVHNEKLFDSLPE-NKRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKDH 310
            V        +P        RG++     +F       G + ++     + G        
Sbjct: 239 GVQRVLRDAGVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGGK 298

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                 + +G  R++ A+I  S        P + AP  + L++     +       ++  
Sbjct: 299 PTPACGFAMGVERLI-ALIRESGGE-----PAAPAP-DVYLVH---QGEAAARQAFRVAE 348

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG-IRED 428
            L   G +V     G    SQ   AD  G    VI+G    +  + ++K  R  G  +  
Sbjct: 349 GLRDQGINVLQHCGGGSFKSQMKKADGSGATFAVIIGDDEAATGEAQLKSLRAEGSAQLK 408

Query: 429 MSLEEVINYASHRF 442
           + ++++      + 
Sbjct: 409 LKVDDLAEAIIGQL 422


>gi|315425704|dbj|BAJ47360.1| histidyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 349

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 10/167 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           M  +  +G+   LP        +  +IRE     G  E+  PTL+  +L+  +SG  +  
Sbjct: 1   MSFEPPRGMDDLLPEEFAVKQRIVDVIREIYRLYGYEEVETPTLEYLELFEAKSG--EEI 58

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
              M    D + + ++  P     +  +  S + S R LP     I   +R +  P++G 
Sbjct: 59  RHRMFVFDDPHGRKLVLRPEVTASVARLVASKL-SRRPLPLRLGYIADCYRYDE-PQWG- 115

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            R R F       F      S      + ++   +F RLGL     +
Sbjct: 116 -RRRRFWQGGLELFGSRDPMSDAE---IILASRDVFQRLGLVEQRFK 158


>gi|296282871|ref|ZP_06860869.1| seryl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 427

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + + Q    G +E + P L   D    +G+   +  ++    D       
Sbjct: 172 ARLHRALGQFMLDRQVTENGYLECNPPLLVRDDAVFGTGQLPKFADDLFHTTD----GRW 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R HI    +LP     +   FR E     +   G +R  +F   +  
Sbjct: 228 LIPTAEVSLTNAVRGHIIEEAHLPLRMTALTPCFRSEAGAAGKDTRGFIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           S  + PE S+  + +M      +   LGL    M   +G +G
Sbjct: 288 SI-VRPEDSEAEHERMTQCAEGVLQALGLPYRKMLLCTGDMG 328


>gi|238898398|ref|YP_002924079.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259511673|sp|C4K5T8|SYS_HAMD5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229466157|gb|ACQ67931.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 430

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 12/214 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKA 103
            +    ++  + +    + G  E  VP   + D  + +G+   +G+++  +     +DK 
Sbjct: 170 ARLHRALSQFMLDLHTKQNGYTEFYVPYFVNHDSLLGTGQLPKFGEDLFHIEPLGSDDKK 229

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I    +LP         FR E     R   G++R  +F   +
Sbjct: 230 YALIPTAEVPLTNLVRQQILEESSLPLKMMAHTPCFRSEAGSYGRDTRGLIRMHQFDKVE 289

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S  +  ++     ++  +L L    M   +G +G         E  +   
Sbjct: 290 LVQI-TRPEDSMRALEELTEHAEQVLKKLELPYRKMLLCTGDMGFGAKKTYDLEVWLEGQ 348

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF      T +        + 
Sbjct: 349 KTYREISSCSNMGDFQARRMQTRYKTASKNCFVH 382


>gi|237793335|ref|YP_002860887.1| seryl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259511662|sp|C3KXS1|SYS_CLOB6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229262324|gb|ACQ53357.1| serine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 426

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V +   +    + G IE+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERAVISYFLDTHTEKHGYIEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  +     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEVLKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYDELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDSKAKPQYVHT 383


>gi|157146419|ref|YP_001453738.1| seryl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|166219863|sp|A8AII9|SYS_CITK8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157083624|gb|ABV13302.1| hypothetical protein CKO_02178 [Citrobacter koseri ATCC BAA-895]
          Length = 430

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D ++  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFDVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDALPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEESMDALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIVLCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|34540153|ref|NP_904632.1| seryl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|34396465|gb|AAQ65531.1| seryl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 423

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 74/223 (33%), Gaps = 10/223 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G  E+  P + + D    +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALVNFFLDEARNAGFTEIEPPYVVNEDSGYGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +   N   +   PT E  +T+IFR  I S   LP         FR E     +   G+ R
Sbjct: 223 VTADN---LYLIPTAEVPVTNIFRDVILSEDELPILLTAYSACFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
             +F   +    D  PE S    ++M      +  +LGL    +R   G I     L+++
Sbjct: 280 LHQFNKVEIVCID-KPEHSYEQLDQMVGYVQGLVDKLGLPWRILRLCGGDISFTSALTYD 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           F V +   E  +  S         +         +   +    
Sbjct: 339 FEVYSAAQERWLEVSSVSNFESFQANRLKCRYRNADKKVELCH 381


>gi|254577065|ref|XP_002494519.1| ZYRO0A03410p [Zygosaccharomyces rouxii]
 gi|238937408|emb|CAR25586.1| ZYRO0A03410p [Zygosaccharomyces rouxii]
          Length = 459

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRT-GMIHQHS---KGI--YSWLPLGQKALDNVNAIIR 58
           K   PI     + A+++ H+++LR  G   +      G   Y +   G      +     
Sbjct: 137 KEVGPIAAATGKPAKLSHHEVLLRLDGYDPERGVKISGHRGYFFRNNGVFLNQALINYGL 196

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G   +  P + + ++  ++ +   + +E+ ++ D +D+  +   + + +     
Sbjct: 197 SFLATKGYTPLQPPVMMNKEVMGKTAQLSQFDEELYKVMDGDDEKYLIATSEQPISAYHS 256

Query: 119 RSHIKSYRN-LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
               +  +  LP  +      FR E     +  +G+ R   F   +       PE S   
Sbjct: 257 GEWFEKPQEQLPVRYAGYSSCFRREAGAHGKDAWGIFRVHAFEKIE-QFCLTEPEKSWEE 315

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           +++M       +  L L    +   SG +    + +F + A
Sbjct: 316 FDRMISLSEEFYQGLNLPYRVVGIVSGELNNAAAKKFDLEA 356


>gi|208779037|ref|ZP_03246383.1| seryl-tRNA synthetase [Francisella novicida FTG]
 gi|208744837|gb|EDZ91135.1| seryl-tRNA synthetase [Francisella novicida FTG]
 gi|328676733|gb|AEB27603.1| Seryl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 426

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D  
Sbjct: 170 KIAKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKL--EGDFE 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 228 YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   +G + S   +     ++  +L L    M+  +G +G         E  + + 
Sbjct: 288 LVHITAADKG-EESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 347 NTYREISSCSWCGDF 361


>gi|255513782|gb|EET90047.1| seryl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 431

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 111/346 (32%), Gaps = 82/346 (23%)

Query: 24  KLMLRTGM--IHQHS--KGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSA 77
           +++ + GM  + + +   G   +  +G        +     +E ++ G   +S P +   
Sbjct: 139 EVLEKLGMLEMQKAAEVSGARFYYLMGDMVRLEQALIRFAIDELSKKGYTVVSPPFMLKK 198

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK-----------AMIYGPTHEEVMTDIFRSHIKSYR 126
           + +  +     + + + ++AD N+                  T E  +  +    + S +
Sbjct: 199 EYYRGATALGDFEELLYKIADPNEAAGRKDYERIESETFLISTSEHAIAAMHAGDLFSGK 258

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP  +  I   FR E     +   G+ R  +F   + + F    E     ++++  +  
Sbjct: 259 DLPLKYVGISPCFRREAGAHGKDTKGIFRVHQFYKVEQFVFSRADESWG-YFDELLGNSE 317

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+ +LG+    +   +G IG        V A   + + +         + S +      
Sbjct: 318 SIYRKLGIPHRVVDICTGDIGT-------VAAKKNDIEAYMPSQGRYREVVSCSNC---- 366

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                                                        +      ++ +   +
Sbjct: 367 -------------------------------------------TDWQ-----AMRLDIKY 378

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-IIWPDSVAPF 347
              DG+ +   + S  I   R + A+IE+  +  G I  P ++ P+
Sbjct: 379 DDKDGRHYVHTLNSTAIATTRTMVAIIENYLNDDGSITVPKALVPY 424


>gi|307609316|emb|CBW98796.1| hypothetical protein LPW_05921 [Legionella pneumophila 130b]
          Length = 426

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 19/238 (7%)

Query: 20  IASHKLMLRT--GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           + SH  +      M    +    G    +  G  A     +   + +    + G  E+ V
Sbjct: 136 VKSHDELGEALGQMDFALAAKITGSRFVVMKGHLARLHRALIQFMLDIHIQQHGYQEIYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +AD  + +G+   +  ++ +L    D       T E  +T+  R  I S   LP  
Sbjct: 196 PYIVNADSLLGTGQLPKFEADLFKLT--GDNGYYLTSTSEIPVTNTVREMILSAEQLPIR 253

Query: 132 FYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +      FR E     +   G++R  +F   +   +   PE S ++  ++      I  R
Sbjct: 254 YVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVE-LVWITKPEDSYNALEQLTQHAEVILQR 312

Query: 188 LGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L L    +   +G IG   +     E  + +     ++    +   F        F +
Sbjct: 313 LNLPYRVVALCTGDIGAGSAKTYDLEVWLPSQNTYREISSCSNMEAFQARRMKARFRN 370


>gi|83718513|ref|YP_442109.1| seryl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167619053|ref|ZP_02387684.1| seryl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|123537279|sp|Q2SY90|SYS_BURTA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|83652338|gb|ABC36401.1| seryl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 433

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + D+   +G+   + ++M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPDVLYGTGQLPKFAEDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVDASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I   L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQIVA-PEASYAALDEMVGHAEAILQTLELPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTESFQARRMQARFRNAQGKPELVH 383


>gi|288574952|ref|ZP_06393309.1| seryl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570693|gb|EFC92250.1| seryl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 425

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 13/215 (6%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +   +R G  E++ P + ++     +G+   +  ++ R+AD +   +
Sbjct: 169 GARLERALLNFMLDLHVDRHGYKEINPPFMVNSATMTGTGQLPKFADDLYRIADDD---L 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++    I    +LP  +      FR E     R   G+MR  +F   + 
Sbjct: 226 WLIPTAEVPLTNLHGGEIMEESDLPLYYTAYTPCFRKEAGSHGRDVRGIMRQHQFEKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                TPE S     K+  +   +   L L    +   +G +G   S     E  + +  
Sbjct: 286 VKLS-TPENSYEELEKLTSNAEEVLQLLKLPYRVITLCTGDMGFGASKTYDIEVWLPSQG 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              ++    +  DF     NT +            
Sbjct: 345 RYREISSCSNCEDFQARRMNTRYRPSQGGKPRFVH 379


>gi|167037771|ref|YP_001665349.1| glycyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167039989|ref|YP_001662974.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|256751965|ref|ZP_05492835.1| glycyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914079|ref|ZP_07131395.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307724688|ref|YP_003904439.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|320116186|ref|YP_004186345.1| glycyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166854229|gb|ABY92638.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|166856605|gb|ABY95013.1| glycyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749170|gb|EEU62204.1| glycyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889014|gb|EFK84160.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307581749|gb|ADN55148.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|319929277|gb|ADV79962.1| glycyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 462

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 151/445 (33%), Gaps = 58/445 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   Q     + +    L + ++WV SG   S+      L 
Sbjct: 34  WDYGPLGVELKNNIKRMWWKRFIQQSPYNVGIDSAILMNPEVWVASGHVSSFSD---PLM 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR------PRFGVMR 151
           D  +    +     +++ D  +    +     +T  Q+ ++F  E +             
Sbjct: 91  DCKECKSRFRAD--QLIEDYIKEKGLNISIEGWTNEQM-MEFIKEHKVSCPKCGAHNFTD 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R+F +       +T +     Y +      +FV++  +          +    G IG  
Sbjct: 148 IRKFNLMFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRT---TRKKIPFGIGQIGKS 204

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +E         T+ F   +   F  P E+ ++        +           +    +
Sbjct: 205 FRNEITPGNFIFRTREFEQMELEFFCKPGEDMEWFSYWRKYCMDWLLEFGLKEENLRFRD 264

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD--------G 307
              + L      +    ++ + F FG          T + L       G D        G
Sbjct: 265 HKKEELSHYSTATT---DIEYNFPFGWGELWGIANRTDFDLRQHMEHSGVDLSYMDPVTG 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHD 358
           + +        +G  R++ A +  +++ +          +    ++AP K +++ +    
Sbjct: 322 EKYIPYCIEPSVGVDRLMLAFLIDAYEEEELEDGETRVVLRLHPALAPIKAAVLPLSKK- 380

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D  V I
Sbjct: 381 --LSENAYKLYDQLRNKFV-VDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDHCVTI 436

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  + +EEV  Y   R +
Sbjct: 437 RDRDTMQQVRIKIEEVEKYLEERLN 461


>gi|149241134|pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
 gi|149241135|pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
          Length = 425

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 12/205 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +     +   + G  E+  P L   ++ + +G+   + +++ +    N   +
Sbjct: 170 WGARLERALINFXLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDN---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I    NLP         +R E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + P+ S     K+      +   LGL    +   +G +G   +     E    +  
Sbjct: 287 VKI-VHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++    +  DF     NT F D
Sbjct: 346 KYREISSCSNCEDFQARRXNTRFKD 370


>gi|299820883|ref|ZP_07052772.1| serine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299817904|gb|EFI85139.1| serine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 429

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + +      +G+   + ++   + 
Sbjct: 163 FVFYKKLGARLERALLNFMMDLHADEHGYDEILPPYMVNRVSMTGTGQLPKFEEDAFLV- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               +     PT E  +T++ R  I   ++LP  +      FR E     R   G++R  
Sbjct: 222 --EKEDYFLIPTAEVPVTNLHRDEIFQAKDLPRKYTAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S  +  K+  +   +  RL L    +   +  +G   + ++ + 
Sbjct: 280 QFNKVELVQF-VKPEDSYEALEKLTDNAEEVLRRLELPYRVLSMCTADLGFTAAKKYDIE 338


>gi|312880090|ref|ZP_07739890.1| seryl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783381|gb|EFQ23779.1| seryl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 424

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    +   + +      G +E++ P L ++     +G+   + +++ R +   +  
Sbjct: 168 WGARLERALTQFMLDRHTQNHGFLEIAPPYLVNSKTMRGTGQLPKFAEDLYRCS---NDD 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  MT++    I   + LP  +      FR E     R   G++R  +F   +
Sbjct: 225 LWLIPTAEVPMTNLHAGEILQEKELPLYYTAYTPCFRREAGTYGRDMKGMLRVHQFDKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S      +      I   L L    +   +G +G   +     E  + + 
Sbjct: 285 LVKL-CRPEDSYEELESLTRCAESILQDLELPFRTICLCTGDMGFSAAKTYDLEVWIPSQ 343

Query: 216 TGETQVFCSKDFMDF 230
               ++    +  DF
Sbjct: 344 NCYREISSCSNCEDF 358


>gi|304414049|ref|ZP_07395417.1| histidyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304283263|gb|EFL91659.1| histidyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 426

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 144/435 (33%), Gaps = 43/435 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G++  LP       +V  +++   +R G  E+ +P ++ + L+  + G   D   K
Sbjct: 8   QAIRGMHDSLPAETALWQHVEDVVKRVLSRYGYSEIRLPIVEQSQLFKRAIGEMTDVVEK 67

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 68  EMYSFDDRNGESLTLRPEGTAGCIRAGIEHGLLYNQQ-QRLWYIGPMFRHE-RPQKG--R 123

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    +  E   IG        
Sbjct: 124 YRQFHQLGAEVFGLFGPDIDAE---LIMLTARCWRELGIAD-HVELELNSIGSLQERARY 179

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE---KLF 268
             A     ++  +K   D            + S N  ++Q        S+  +E   + F
Sbjct: 180 RDALVAFLEIHKNKLDEDCQRRMYFNPLRVLDSKNPNIQQLLHDAPVLSEYLDEKSKQHF 239

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSATFKGADGKD---------- 309
             L      +    +V      G  Y         +  + A      G            
Sbjct: 240 AGLCAFLDQTNIKYKVNPRLVRGLDYYNHTVFEWITKNLGAQGTICAGGRYDELVEQLGG 299

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R++  V   +        P+  A   I +  I +  +  + A  ++ 
Sbjct: 300 QATPGIGFSMGLERLILLVQAIN--------PNFTAAKMIDVYLIASG-EGTQSAAMQLA 350

Query: 370 ARLSKVGCDVFWDDM--GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             L      +       G +I  QF+ A+  G    +++GS  +S  KV +K+   G +E
Sbjct: 351 EDLRNKIPSLKLMTHHGGGKIARQFSRAEQCGARFALVLGSNELSTRKVTLKNLAIGEQE 410

Query: 428 DMSLEEVINYASHRF 442
            +   ++    +   
Sbjct: 411 TVQQADIAVRLAKLL 425


>gi|227112001|ref|ZP_03825657.1| seryl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227328169|ref|ZP_03832193.1| seryl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 431

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 80/231 (34%), Gaps = 21/231 (9%)

Query: 20  IASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H  +     G+    +    G    +  GQ A     +   + +    + G  E  V
Sbjct: 137 VRDHVELGEMAAGLDFAAAVKLTGARFVVMKGQIARLHRALAQFMLDLHTQQHGYQEAYV 196

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRN 127
           P L +      +G+   +G+++      +++A        PT E  +T++ R  I    +
Sbjct: 197 PYLVNHATLYGTGQLPKFGEDLFHTTPLSEEAESSSYALIPTAEVPLTNLVRDEILDEES 256

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +     + PE S  +  ++      
Sbjct: 257 LPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VRPEDSMQALEELTTHAET 315

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +   L L    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 316 VLQLLKLPYRKVLLCTGDMGFGSTKTYDLEVWLPAQDTYREISSCSNMWDF 366


>gi|308186248|ref|YP_003930379.1| Seryl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308056758|gb|ADO08930.1| Seryl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 430

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 87/246 (35%), Gaps = 21/246 (8%)

Query: 19  EIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMS 70
           ++  H  +     G+    +    G    +  GQ A     ++  + +    + G +E  
Sbjct: 135 QVKDHVELGEAAKGLDFAAAVKLTGSRFVVMQGQIARLHRALSQFMIDLHTEQHGYLETY 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYR 126
           VP L + +    +G+   +G+++       +++        PT E  +T++ R  I    
Sbjct: 195 VPYLVNHETLYGTGQLPKFGEDLFHTRPLEEQSDSSNYALIPTAEVPLTNLMRDEIVEED 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP         FR E     R   G++R  +F   +     +TPE S  +  ++     
Sbjct: 255 SLPVKLTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VTPEQSMDALEELTGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++   L L    +   +G +G   +     E  + A     ++    +  DF        
Sbjct: 314 KVLQLLNLPYRKVLLCTGDMGFGSTKTYDLEVWLPAQNTYREISSCSNMGDFQARRMQAR 373

Query: 239 FDDIIS 244
           + +   
Sbjct: 374 YRNKQE 379


>gi|168181130|ref|ZP_02615794.1| seryl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182668022|gb|EDT80001.1| seryl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 426

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V +   +    + G IE+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERAVISYFLDTHTEKHGYIEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  +     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEVLKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYDELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDSKAKPQYVHT 383


>gi|188995510|ref|YP_001929762.1| seryl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|188595190|dbj|BAG34165.1| seryl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 423

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 74/223 (33%), Gaps = 10/223 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G  E+  P + + D    +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALVNFFLDEARNAGFTEIEPPYVVNEDSGYGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +   N   +   PT E  +T+IFR  I S   LP         FR E     +   G+ R
Sbjct: 223 VTADN---LYLIPTAEVPVTNIFRDVILSEDELPILLTAYSACFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
             +F   +    D  PE S    ++M      +  +LGL    +R   G I     L+++
Sbjct: 280 LHQFNKVEIVCID-KPEHSYEQLDQMVGYVQGLVDKLGLPWRILRLCGGDISFTSALTYD 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           F V +   E  +  S         +         +   +    
Sbjct: 339 FEVYSAAQERWLEVSSVSNFESFQANRLKCRYRNADKKVELCH 381


>gi|319740175|gb|ADV60381.1| glu- + pro-tRNA synthetase [Phiditia sp. JCR-2009]
          Length = 134

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      F   D ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEIVFDDQDTQEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN--IKAHDQVCR-----DACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++   I A           D+C+ +   L   G     D       
Sbjct: 74  GLVLPPYIAEVQAIVVPCGITASSSAEERKNLIDSCKALVDDLIAGGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|302346704|ref|YP_003815002.1| serine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302150536|gb|ADK96797.1| serine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 429

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 111/316 (35%), Gaps = 65/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + +    +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQESGQATGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I + ++LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILNEQDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    D  PE S  S ++M      +  +L L    +R      GGD+S    
Sbjct: 281 LHQFDKVEIVRID-KPEHSYQSLDEMLDHVEGLLKKLELPYHILRLC----GGDIS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF + S   +    +S  S  E + A        H E      
Sbjct: 332 ----------FTAALCYDFEVWSAAQERWLEVSSVSNFESYQANRLHCRFRHAED----- 376

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + IE+ H    G+  +LP                         R+VAA+IE+
Sbjct: 377 --------KKIELCHTLN-GSALALP-------------------------RIVAAIIEN 402

Query: 332 SHDGKGIIWPDSVAPF 347
           +   +GI  P  + P+
Sbjct: 403 NQTPEGIRVPKVLVPY 418


>gi|146296476|ref|YP_001180247.1| seryl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166201242|sp|A4XJH1|SYS_CALS8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|145410052|gb|ABP67056.1| seryl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 420

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 10/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G +E+  P L +    + +G+   + ++  +  D 
Sbjct: 164 FYRGLGARLERALINFMLDLHIEKHGYVELFPPFLVARKSMIGTGQLPKFEEDAFKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I    +LP  +      FR E     +   G++R  +F
Sbjct: 223 ---DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    +   SG +G   +  + + 
Sbjct: 280 NKVELVKF-AKPEDSYDELEKLTADAEDVLKHLGLPYRVVLLCSGDLGFSSAKTYDIE 336


>gi|329667903|gb|AEB93851.1| seryl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 436

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V+    +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVSNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFTEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I     LP         FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRGKILDGEQLPINVTAFSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     +  E S     K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKI-VDEESSWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRSLIRYRDENGKLHLAH 385


>gi|312962904|ref|ZP_07777391.1| Histidyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311282931|gb|EFQ61525.1| Histidyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 429

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 143/436 (32%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V   +    +  G  ++ +P ++  +L+  S G   D   K
Sbjct: 6   QAIRGMNDILPEQTPLWRYVEGTVARLLDNYGYKQIRMPIVEFTELFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H  +    P   + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAACVRAVLEHGLTGGGQPQKLWYIGPMFRHE-RPQKG--R 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F+L           + V   R++  LG++   ++ E   +G   S    
Sbjct: 123 YRQFHQIGLEVFNLDGPDIDAE---LIVLTWRLWGMLGIRD-AVKLELNSLGTSESRARY 178

Query: 212 VLADT----------GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E      K      + ++N D    +     +  +    + T  
Sbjct: 179 REALVEFLSARLDMLDEDSQRRLKTNPLRVLDTKNADTQAALVDAPKMADYLDDESRTHF 238

Query: 262 VHNEKLFDSLPEN---KRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKD 309
              +   D+            RG++     +F       G + ++     + G       
Sbjct: 239 EGLKARLDAAGIPYVINPKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGG 298

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIK-AHDQVCRDACEK 367
                  + +G  R++  ++E+         P+ +A    + L     A +       EK
Sbjct: 299 KPTTGVGFAMGIERLIL-LLETLEQ-----VPEEIARQVDVYLCAFGEAAELAALALSEK 352

Query: 368 IYARLSKVGCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
           +  +L  +   +         G  +  F  AD  G    +I+G   ++   +  K  R  
Sbjct: 353 VRDQLPNLRLQI-----NAGAGSFKSQFKKADKSGALYALILGDDELARQVIGFKPLRGQ 407

Query: 424 GIREDMSLEEVINYAS 439
           G +++++ + +  + +
Sbjct: 408 GEQQNIAFDALAAHLA 423


>gi|222528873|ref|YP_002572755.1| seryl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|254783001|sp|B9MQM8|SYS_ANATD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|222455720|gb|ACM59982.1| seryl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 420

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P L +    + +G+   + ++  +  D 
Sbjct: 164 FYRGLGARLERALINFMLDLHIEKHGYTELFPPFLVARKSMIGTGQLPKFEEDAFKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I    +LP  +      FR E     +   G++R  +F
Sbjct: 223 ---DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    +   SG +G   +  + + 
Sbjct: 280 NKVELVKF-TKPEDSYDELEKLTADAEDVLKELGLPYRVVLLCSGDLGFSSAKTYDIE 336


>gi|189485027|ref|YP_001955968.1| seryl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|238065109|sp|B1GZ25|SYS_UNCTG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|170286986|dbj|BAG13507.1| seryl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 423

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + +   ++    G  E++ P L +      +G+  +  ++  + A  +   + 
Sbjct: 170 GSALERAIISFFLDKHKEKGYKEITTPYLVNRASMTGTGQLPNLEEDSFKCAIDD---LY 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE----LRPRFGVMRSREFLMKDAY 161
             PT E  +T+I+R  +     LP  +      FR E     +   G++R+ +F   +  
Sbjct: 227 LIPTAEVPVTNIYRDDVLEESALPQKYVSYSACFRRESGSYGKDTKGLIRNHQFDKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            F   PE S      + +    +   LGL    +   +G IG   S  +
Sbjct: 287 KF-AKPETSSEELESLVLDAGNVLELLGLPYRVVLLSTGDIGFSSSKTY 334


>gi|91774249|ref|YP_566941.1| seryl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121689020|sp|Q12TN5|SYS2_METBU RecName: Full=Type-2 seryl-tRNA synthetase; AltName:
           Full=Serine--tRNA ligase; Short=SerRS; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase
 gi|91713264|gb|ABE53191.1| Seryl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 502

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 37/222 (16%)

Query: 12  QENPRDAEIAS--HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAI 67
           + + ++   A    + M++ G I +  S+G +   P   K       I+ +E     G  
Sbjct: 173 ESDKKEHTFAGDPTQEMMKHGWIKRGASRGQWIHGPQSTKMFRTFEKIVYDELLEPLGYR 232

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-------------GPTH---- 110
           EM  P L   ++W +SG       E+  +     +   Y              PT     
Sbjct: 233 EMIFPKLVPWEVWQKSGHAKGVYPEIYYVCPPKTRDPAYWEEVSDHYKVTHEVPTELIKS 292

Query: 111 -------------EEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPRFGVMRSREFL 156
                                +         P   +       R E     G+ R  EF 
Sbjct: 293 KIGDPIGGLCYAQCPPFWMYLQGETIPTDEFPIKVFDKSGTSHRYESGGIHGIERVDEFH 352

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRA 197
             +   +  T E    +  K+   Y+ IF+  L L+      
Sbjct: 353 RVEIV-WLGTKEQVIETARKLHERYMHIFNEILDLEWRKAWV 393


>gi|167580961|ref|ZP_02373835.1| seryl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 433

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + D+   +G+   + ++M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPDVLYGTGQLPKFAEDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVDASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQIVA-PEASYAALDEMVGHAEAILQKLELPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTESFQARRMQARFRNAQGKPELVH 383


>gi|261856154|ref|YP_003263437.1| seryl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261836623|gb|ACX96390.1| seryl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 431

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 12/193 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +   N+ G  EM VP + +      +G+   +G+++  L    D    
Sbjct: 169 ARLHRALAQFMLDLHSNQHGYTEMYVPYIVNDKSLFGTGQLPKFGEDLFAL--NGDADWY 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  + S  +LP  +      FR E     R   G++R  +F   +  
Sbjct: 227 LIPTAEVPLTNLVRDELLSANDLPRRYVAHTPSFRAEAGAAGRDTRGMIRQHQFDKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              +  E S  +   +      +   L L    M+  +G +G   +     E  +     
Sbjct: 287 QI-VRAEDSAAALEALTSHAEAVLQALELPYRVMQLCTGDMGFSAAKTYDLEVWLPGQNT 345

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 346 YREISSCSNCTDF 358


>gi|34541737|ref|NP_906216.1| glycyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|34398055|gb|AAQ67115.1| glycyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 515

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 114/366 (31%), Gaps = 76/366 (20%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 202 EMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGICQIGKAFRNEIVARQFIFR 261

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F    E     + K     ++    LG              GD  + F 
Sbjct: 262 MREFEQMEMQFFVRPGEEL-QWFEKWKNLRMQWHRALGF-------------GDDKYRFH 307

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I  +    +     +H+   FD  
Sbjct: 308 ----------------------DHDKLAHYANAATDIEFEMPFGFKEVEGIHSRTDFDLS 345

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI-- 329
                                ++S      F     K +   +    IG  R+   ++  
Sbjct: 346 RH------------------EEFSGKKLQYFDPEQNKSYVPYVVETSIGLDRMFLTILFG 387

Query: 330 ----ESSHDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
               E + +G+    +  P ++AP K++++ +   D        +I   L        +D
Sbjct: 388 SYCEEETSNGEMRVVLKLPAALAPVKLAVLPLVRKD-GLDAKAREIVHDLR-------FD 439

Query: 383 -----DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
                D  + IG ++   D +G P  + V  + + D+ V I++R T  +E + +  +   
Sbjct: 440 FACQYDEKDSIGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRYRDTMEQERVEISRLNAI 499

Query: 438 ASHRFS 443
            S   S
Sbjct: 500 ISEYVS 505


>gi|295698414|ref|YP_003603069.1| seryl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157080|gb|ADD79525.1| seryl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 438

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 15/207 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRN 100
            +    ++  + +   ++ G  E+ VP + +      +G    +  ++  +        N
Sbjct: 170 ARLYRALSQFMIDLHVDQHGYYEVLVPYIVNYQSLYHTGHLPKFMNDLFSIKLNKNLKEN 229

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
            +     PT E  M ++ +  I SY +LP         FR E     +   G++RS +F 
Sbjct: 230 HEDYFLVPTGEVPMVNLVQDKIFSYESLPIKLISNTACFRLEAGSYGKKTRGLIRSHQFD 289

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +     + PE S+ +  ++     +I   L L    +   S  +G   S     E   
Sbjct: 290 KVELVQI-VQPEKSRTALEELTSHAEKILELLKLPYRKLILHSENLGFSSSKTYDLEVWF 348

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF 239
            +     ++    +  DF     NT F
Sbjct: 349 PSQKKYIEISSCSNTTDFQSRRMNTKF 375


>gi|262305703|gb|ACY45444.1| glu- + pro-tRNA synthetase [Amblyomma sp. 'Amb2']
          Length = 134

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      F+  +  +  +    S+G+   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIQFEDPETREKKFAFQNSWGLT-TRTIGVLVMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA ++I ++       +  +        C+   + LSK G     D       
Sbjct: 74  GLVLPPRVASYQIVIVPCGITAAMTEEQKAALIKFCQDFESTLSKEGVRCKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|187251906|ref|YP_001876388.1| seryl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|238065101|sp|B2KEV5|SYS_ELUMP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|186972066|gb|ACC99051.1| Seryl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 424

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 75/213 (35%), Gaps = 11/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    + + + ++  + G  E+  P++ + ++ + +G+   + ++M  L    +    
Sbjct: 172 GARLERALISYMLDKHAKKGYTEVVPPSIVNEEILIGTGQLPKFREDMYAL--EGEPKQF 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T++ R  +     LP         FR E     +   G++R+ +F   +  
Sbjct: 230 LISTAEIPLTNMNRGKVLQEAELPVKLTAGTPCFRKEAGTYGKDTRGLIRNHQFDKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
               + +   +    M      +   LGL    +   +G +G   +     E  + ++  
Sbjct: 290 MISNSNDSF-NLLEAMTADAEDVLKGLGLAYRTVELCTGDMGFSSAKTYDIEVWMPSENK 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +   F     N  + +       V 
Sbjct: 349 YREISSCSNCTSFQARRMNLRYKNAEGKIEFVH 381


>gi|257469473|ref|ZP_05633565.1| histidyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317063717|ref|ZP_07928202.1| histidyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313689393|gb|EFS26228.1| histidyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 415

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 116/420 (27%), Gaps = 56/420 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              ++ + +E     G   +  P  +  DL+        D   KEM    DR ++++   
Sbjct: 21  YTYISKMAQEVFENYGYTYIKTPIFEETDLFKRGIGEGTDVVEKEMYTFKDRGERSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +    +     +Y     FR E RP+ G  R REF          + 
Sbjct: 81  PENTASVVRSYLENGIYGKEEVTRYYYNGSMFRYE-RPQAG--RQREFNQIGVEVLGESS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
                    M  + L    +LG+  + +   S                   PI  +L  +
Sbjct: 138 PILDAEVIAMSYTLL---EKLGISDLEVHINSVGTTASRTQYREKLLNFLNPIKEELCED 194

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDD-------IISLNSIVEQWTAPYAATSDV 262
             +  +    +V   K      +  E     D           +              D 
Sbjct: 195 CQMRMEKNPLRVLDCKVEKCKELTKEAPSIIDSLTEEERAHYEDVKKYLDIFGIKYVEDP 254

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              +  D                     G      +       D         + G+   
Sbjct: 255 KLVRGLDYYSSTVYEIVTNKLGAQGTVLGGGRYDNLLKQLGDKD---IPAVGFAAGV--- 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             +  ++E            S +P    +      D+  +D   KI   L   G   F D
Sbjct: 309 ERMMMLLEEY---------PSNSP---DVYVAWLGDE-AKDFGIKITKVLRDAGVKTFVD 355

Query: 383 DMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              +  G +     AD LG    +I G   ++   V +K      +E++S E+ +     
Sbjct: 356 FNSK--GMKSHMKKADKLGVKYCIIAGEDEINKGTVVLKDFANRTQEELSFEKAMEIIKE 413


>gi|257138294|ref|ZP_05586556.1| seryl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 475

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + D+   +G+   + ++M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPDVLYGTGQLPKFAEDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVDASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I   L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQIVA-PEASYAALDEMVGHAEAILQTLELPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTESFQARRMQARFRNAQGKPELVH 383


>gi|90994539|ref|YP_537029.1| histidine-tRNA synthetase [Porphyra yezoensis]
 gi|116242479|sp|Q1XDD9|SYH_PORYE RecName: Full=Histidyl-tRNA synthetase, chloroplastic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|90819103|dbj|BAE92472.1| histidine tRNA synthetase [Porphyra yezoensis]
          Length = 430

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 139/433 (32%), Gaps = 40/433 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GK 91
           Q  +G    LP   +    ++  I +        E+  P  ++++L+      D+    K
Sbjct: 5   QAIRGTKDILPDEIQYWQFIHNKISKLLECANYQEIRTPIFENSELYDRGIGEDTDIVNK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM R  DR+++ +   P     +   F  +  SY +     +     FR E RP+ G  R
Sbjct: 65  EMYRFHDRSNRDITLRPEGTAGIVRSFIENKMSYHHSLQRLWYSGPMFRYE-RPQSG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPIG-- 203
            R+F              +      +    + IF+ L L ++        + E   I   
Sbjct: 122 QRQFHQLGIEFIGSLDARADSE---VIHLAMSIFNNLNLHNLKLDLNSIGKVEDRSIYQV 178

Query: 204 --GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              D   ++    DT   +   S           NT      +                D
Sbjct: 179 KLRDYLTKYHDDLDTDSQKRLTSNPIRILDSKDSNTQKILTEAPKISDFLSLESQQHFGD 238

Query: 262 VHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----GKDHYVQMGS 316
           V N     ++P N      RG++  +   F  K     + T KG D    G  +   +  
Sbjct: 239 VCNYLKLLNIPYNINNKLVRGLDYYNDTAFEIK-----TLTSKGQDTICGGGRYDSLVHQ 293

Query: 317 YGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            G  A   V   I            I  P+    F I+            +   +I   L
Sbjct: 294 LGGKATPAVGCAIGLERLLLIAKDNIDLPNKSIDFYIA-----TQGTKANETGMQIMRFL 348

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +    +  D        Q   A+       +I+GS  +++  + IK   +  +E++++ 
Sbjct: 349 HQQFFKIEIDVSSSNFSKQIKQANKKRAVACIIIGSNEIAEGIITIKWLFSQKQENITVV 408

Query: 433 EV---INYASHRF 442
           ++   ++Y   + 
Sbjct: 409 QLKHSVSYLKKKI 421


>gi|71892303|ref|YP_278037.1| histidyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|83305863|sp|Q492E1|SYH_BLOPB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71796409|gb|AAZ41160.1| histidyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 438

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 10/176 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G++ +LP        +  I+    +  G  E+  P ++  +L+  S G   D   K
Sbjct: 9   QSVRGMHDYLPKDTILWQYIENILITILDSYGYKEIRFPIIEDTNLFKRSIGEVTDVIEK 68

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN   +   P            H   Y       + +   FR E RP+ G  R
Sbjct: 69  EMYNFTDRNGNNLTLRPEGTSGCVRAGIKHGLFYHQE-QRLWYLGPMFRYE-RPQKG--R 124

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            R+F    A +F             + +   R + +LG+ +  +  E   IG   S
Sbjct: 125 YRQFHQFSAEAFGQIGPDIDAE---LILITARCWKKLGI-NHHLSLELNSIGSLSS 176


>gi|26553858|ref|NP_757792.1| seryl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|30173161|sp|Q8EW01|SYS_MYCPE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|26453865|dbj|BAC44196.1| seryl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 426

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            + +  LG K +  +  +  +     G +EMS+P + ++     +G+   + +++  L  
Sbjct: 164 FFIYKGLGSKLMRALQMLTLDINTSNGYLEMSLPVIVNSASLTSTGQLPKFKEDLFAL-- 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +      PT E  +T+ +R+ I     LP  F    L FR E     +   G++R  +
Sbjct: 222 -ENSDYYLSPTLEVQLTNYYRNEILEESALPMKFTASSLNFRSEAGSAGKDTRGIIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           F   +  +  + PE S  +  +M ++   I   L L    +   +G +G   S  + + 
Sbjct: 281 FYKTELVNL-VHPEKSYQALEEMTLNAESILEALELPYRRILLCTGDMGFSSSKTYDIE 338


>gi|298372789|ref|ZP_06982779.1| glycine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275693|gb|EFI17244.1| glycine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 516

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 112/354 (31%), Gaps = 73/354 (20%)

Query: 93  MLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M         D   K  +   T + +  +           +PF   QI   FR+E+  R 
Sbjct: 198 MFSTEIGSVADGATKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQ 257

Query: 148 GVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            + R REF   +   F    E  K   Y K F    R    LGL             GD 
Sbjct: 258 FIFRMREFEQMEMQFFVRPGEEMKWFDYWKHFRM--RWHRSLGL-------------GDG 302

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            + F                                 +   I  +    +     +H+  
Sbjct: 303 KYRFH----------------------DHEKLAHYANAATDIEFEMPFGFKEVEGIHSRT 340

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
            FD                       KYS      F     + +   +    IG  R+  
Sbjct: 341 DFDLSQH------------------EKYSGKNIKYFDPELNESYVPYVIETSIGVDRMFL 382

Query: 327 AVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           +++ +S++ +          +  P  +AP K++++ +   D + + A E +   L K   
Sbjct: 383 SIMAASYEEQQLEGGDSRVVLHLPPVLAPNKVAVLPLVKKDGLPQKAAE-VMNML-KFDF 440

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              +D+  + IG ++   D +G P  V +  + + D  V I+HR +  +  + +
Sbjct: 441 KTVYDE-KDSIGKRYRRQDAVGTPFCVTIDHQTLEDDTVTIRHRDSMEQSRVPV 493


>gi|288802310|ref|ZP_06407750.1| serine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288335277|gb|EFC73712.1| serine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 429

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 111/316 (35%), Gaps = 65/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + +    +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQESGQATGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I + ++LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILNEQDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    D  PE S  S ++M      +  +L L    +R      GGD+S    
Sbjct: 281 LHQFDKVEIVRID-KPEHSYQSLDEMLDHVEGLLKKLELPYHILRLC----GGDIS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F +    DF + S   +    +S  S  E + A        H E      
Sbjct: 332 ----------FTAALCYDFEVWSAAQERWLEVSSVSNFESYQANRLHCRFRHAED----- 376

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + IE+ H    G+  +LP                         R+VAA+IE+
Sbjct: 377 --------KKIELCHTLN-GSALALP-------------------------RIVAAIIEN 402

Query: 332 SHDGKGIIWPDSVAPF 347
           +   +GI  P  + P+
Sbjct: 403 NQTPEGIRVPKVLVPY 418


>gi|23014252|ref|ZP_00054079.1| COG0172: Seryl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 422

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 22/237 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMS 70
           D +    KL L   M    +    G    +  GQ A     +   + + Q    G  EM 
Sbjct: 138 DHDAIGAKLGL---MDFDGAAKLSGARFVVLKGQLARLQRAIGQFMLDLQTTEHGYTEMD 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +        +G+   + +++ +    +       PT E  +T++    I   ++LP 
Sbjct: 195 PPLMVKDGAAFGTGQLPKFSEDLFKTNTGH----WLIPTAEVPLTNLVSDEILDEKSLPL 250

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
               +   FR E     +   G++R  +F   +  S    P+ S   + +M      +  
Sbjct: 251 RMTALTPCFRSEAGSAGKDTRGMIRQHQFHKVEMVSI-AHPDKSDEEHERMTKCAETVLQ 309

Query: 187 RLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           RLGL    +   +G +G         E  +       ++    +  DF        F
Sbjct: 310 RLGLAYRVIVLCTGDMGFSSRKTYDIEVWLPGQQRYREISSCSNCGDFQARRMKARF 366


>gi|188994073|ref|YP_001928325.1| glycyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|188593753|dbj|BAG32728.1| glycyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 515

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 114/366 (31%), Gaps = 76/366 (20%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 202 EMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGICQIGKAFRNEIVARQFIFR 261

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F    E     + K     ++    LG              GD  + F 
Sbjct: 262 MREFEQMEMQFFVRPGEEL-QWFEKWKNLRMQWHRALGF-------------GDDKYRFH 307

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                   +       +   I  +    +     +H+   FD  
Sbjct: 308 ----------------------DHDKLAHYANAATDIEFEMPFGFKEVEGIHSRTDFDLS 345

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI-- 329
                                ++S      F     K +   +    IG  R+   ++  
Sbjct: 346 RH------------------EEFSGKKLQYFDPEQNKSYVPYVVETSIGLDRMFLTILFG 387

Query: 330 ----ESSHDGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
               E + +G+    +  P ++AP K++++ +   D        +I   L        +D
Sbjct: 388 SYCEEETSNGEMRVVLKLPAALAPVKLAVLPLVRKD-GLDAKAREIVHDLR-------FD 439

Query: 383 -----DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
                D  + IG ++   D +G P  + V  + + D+ V I++R T  +E + +  +   
Sbjct: 440 FACQYDEKDSIGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRYRDTMEQERVEISRLNAI 499

Query: 438 ASHRFS 443
            S   S
Sbjct: 500 ISEYVS 505


>gi|156934612|ref|YP_001438528.1| seryl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|166221438|sp|A7MER7|SYS_ENTS8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|156532866|gb|ABU77692.1| hypothetical protein ESA_02446 [Cronobacter sakazakii ATCC BAA-894]
          Length = 430

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +  T  G+    +    G    +  GQ A     ++  + +      G  E
Sbjct: 133 DFEIRDHVTLGETLGGLDFASAVKLTGSRFVVMKGQIARLHRALSQFMLDLHTEEHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EESLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQV-VRPEDSMQALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   SG +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKVLLCSGDMGFGARKTYDLEVWLPAQDTYREISSCSNMWDF 365


>gi|311105360|ref|YP_003978213.1| histidyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760049|gb|ADP15498.1| histidyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 431

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 137/427 (32%), Gaps = 35/427 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP      +    I+R      G   +  P L+   L+    G   D   KEM  
Sbjct: 16  GMNDLLPGASARWEQFEEIVRGWLRGYGYRNVRTPVLEHTRLFARGIGEVTDIVEKEMYT 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS--HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
            AD  D+         E+   I R+        + P   Y I   FR E RP+ G  R R
Sbjct: 76  FADGPDEE--LLTMRPEMTAGIVRASIEHNLLYDRPQRVYSIGPVFRRE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   D  +              M     R++  LGL  + +   S     + +     L
Sbjct: 131 QFHQIDVEALGFAGPDVDAELIVMLA---RLWKLLGLTDVRLELNSLGQPAERAAHRAAL 187

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +  E       +     + S      D     ++ E   +       +  E        
Sbjct: 188 IEHLEKHRDILDEDGQRRMYSNPLRVLDT-KNPAMQEMADSAPRLFDFLGEESRAHFDGM 246

Query: 274 NKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA---- 326
            +R++  GIE         G   Y+L +        G    V  G    G + ++     
Sbjct: 247 CQRLTDAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLIELLGGKSA 306

Query: 327 -AVIESSHDGKGI-IWPDSVAPFK---ISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            AV  +    + + +W  SV   +     +  +   ++  R    ++   L   G  V  
Sbjct: 307 PAVGFAIGMERLLDLWEQSVQVEQQAECDVYVVHQGEEAQR-LAARVGEDLRDAGLSVVV 365

Query: 382 DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT--GI--REDMSLEEV 434
                  G +  F  AD  G  + VI+G+  V+     +K  R    G   ++ + L  +
Sbjct: 366 --HAGSAGFKSQFKRADASGARVAVILGADEVAAQTASVKFLRADAQGETAQQQVPLAGL 423

Query: 435 INYASHR 441
            +  +++
Sbjct: 424 ADVLNNK 430


>gi|254449209|ref|ZP_05062658.1| histidyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198261186|gb|EDY85482.1| histidyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 413

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 136/433 (31%), Gaps = 47/433 (10%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDSYGKEMLRL 96
           ++  LP    A   + + ++    + G  E+ +P L+  +L+  S     D   KEM   
Sbjct: 1   MHDILPDQTPAWQQLESTLQHLMQQYGYREIRMPVLEQTELFSRSIGDVTDIVEKEMYTF 60

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            DRN  ++   P            H   +       + +   +R E RP+ G  R REF 
Sbjct: 61  EDRNGDSLTLRPEGTASCVRAGIQHGLLFNQT-QRLWYMGTMYRHE-RPQKG--RYREFR 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLSHEF 210
                ++ +     +     M     R++ RLGLK + +       AE          EF
Sbjct: 117 QIGVETYGMPGPDVEAELILMSA---RLWKRLGLKQVRLELNTLGTAEERQQYRQQLIEF 173

Query: 211 IVLADTGETQ------------VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               +    +            +  SK+     + +      D +   S     T     
Sbjct: 174 YQAHEEQLDEEAKSRLHSNPLRILDSKNPQVAALNTSAPSLMDALGEESRAHFDTLCELL 233

Query: 259 TSDVHNEKLFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +                   RG++     +F + T     + A      G  +   +  
Sbjct: 234 RAA-------GVDYCINPKLVRGLDYYCHTVFEWITD---ELGAQGTICAGGRYDGLVEQ 283

Query: 317 YGIGAMRVVA-AVIESSHDGKGIIWPDSVAP--FKISLINIKAHDQVCRDACEKIYARLS 373
            G  A   V  A+             +   P    I ++ + A D+    A  +   +L 
Sbjct: 284 LGGRATPAVGMAMGMDRLLALLEELGELTMPSAADIYVLALGADDEA---AAMQCAEQLR 340

Query: 374 KVGCD--VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
               D  V W   G  + S+F  AD  G    V++G       +V IK    G +  ++ 
Sbjct: 341 DQMVDYKVQWHCGGGSLKSRFKKADKSGARYAVLIGGDEGQRGEVVIKPLRGGEQITVAS 400

Query: 432 EEVINYASHRFSN 444
           +E+    +     
Sbjct: 401 DELAQRLTSYIQE 413


>gi|319953428|ref|YP_004164695.1| seryl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319422088|gb|ADV49197.1| seryl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 423

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 99/321 (30%), Gaps = 68/321 (21%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +     G   +   G +    +     ++    G  E+ VP + +      +G+      
Sbjct: 159 VKIAGAGFPVYKGKGARLQRALINYFLDKNTAAGYNEIQVPHVVNEASGYGTGQLPDKEG 218

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRF 147
           +M  +   +   +   PT E  +T++FR  I + ++ P T       FR E         
Sbjct: 219 QMYYMPADD---LYLIPTAEIPVTNVFRDVIVTEKDFPITHTAYTPCFRREAGSYGAHVR 275

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R  +F   +    +  P  S  + + M      I   L L    +R  +G +G    
Sbjct: 276 GLNRLHQFDKVEIVRVEH-PSKSYEALDGMVEHVKGILRELKLPYRILRLCAGDLG---- 330

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                         F S    DF + S   D                             
Sbjct: 331 --------------FTSALTFDFEVFSTAQDRW--------------------------- 349

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVA 326
                         +E+  +  F T  +  +   FK  DGK      +    +   RV+A
Sbjct: 350 --------------LEISSVSNFETYQANRLKLRFKDEDGKSQLAHTLNGSALALPRVLA 395

Query: 327 AVIESSHDGKGIIWPDSVAPF 347
            ++E+     GI  P+ + P+
Sbjct: 396 GILENYQTPDGITIPEVLIPY 416


>gi|302345856|ref|YP_003814209.1| glycine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302149762|gb|ADK96024.1| glycine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 515

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 70/514 (13%), Positives = 151/514 (29%), Gaps = 107/514 (20%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV- 71
           +I SH      G +   S        +Y +   G +  +N+     +      +  + + 
Sbjct: 9   KIVSHCK--EYGFVFPSSDIYDGLAAVYDYGQNGVELKNNIKQYWWQSMVLLHSNIVGID 66

Query: 72  -PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                   +W  SG  D++      L D  D    Y   +  +   I +   K  + +  
Sbjct: 67  ASIFMHPTVWKASGHVDAFND---PLIDNRDSKKRYRADN-LIEDQIGKYEEKIEKEVAK 122

Query: 131 TFYQIQLKFRDELRPRFGVMRS-------------------------------------- 152
              +    F DE + R    R                                       
Sbjct: 123 AARKFGESF-DEAKFRETNPRVLENQKKRDDLHARYTEAMQGPDLEALKQIILDEGIVDP 181

Query: 153 ----------REFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFH--RLGLKSIP 194
                     R+F +  +     + + +   Y +      +FV++L +    R+ L    
Sbjct: 182 ISGTTNWTDVRQFNLMFSTEMGASADATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGI 241

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--- 251
            +     IG    +E +        + F   +   F  P     + +    + +      
Sbjct: 242 CQ-----IGKAFRNEIVARQFVFRMREFEQMEMQFFCQPGTEMKWFEYWKKHRLAWHEGL 296

Query: 252 --------WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSAT 301
                   +          +     +           GI     F      KYS      
Sbjct: 297 GMGDDNYRFHDHEKLAHYANAATDIEFHMPFGFKEVEGIHSRTNFDLSQHEKYSGRQVKY 356

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLI 352
           F     +++   +    IG  R+  +V+  S+  + +           P+ +AP K +++
Sbjct: 357 FDPERNENYTPYVVETSIGVDRMFLSVMCHSYTEEALENGSSRVVLKLPEPLAPVKCAVL 416

Query: 353 NIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +   D    +  ++I   L        +       + IG ++   D +G P  V V   
Sbjct: 417 PLVNKD-GLPEKAQEIVNSLKFHFNTHMEAK-----DSIGKRYRRQDAIGTPFCVTVDGD 470

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++D+ V +++R +  +E + +E++      R S
Sbjct: 471 TLTDNTVTLRYRDSMKQERVPVEKLREIIEDRVS 504


>gi|323143152|ref|ZP_08077851.1| serine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322417079|gb|EFY07714.1| serine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 436

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 17/196 (8%)

Query: 51  DNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-------DRNDK 102
             +   + +   +  G  E+ VP L + D    +G+   +G+++   +       D  ++
Sbjct: 174 RALVHYMLDLHCKHQGYTEVYVPYLVNLDSLYGTGQMPKFGEDLFHTSLNGNADGDDVNR 233

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                PT E  +T++ R  I     LP         FR E     R   G++R  +F   
Sbjct: 234 HFCLIPTAEVPLTNMVRGEIIPEEKLPIKVTAHTPCFRSEAGSAGRDTRGLIRMHQFDKV 293

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +     + PE S  +   +      +   L L    M   +G IG   +     E  + A
Sbjct: 294 EMVQI-VRPEDSWEALEILTHDAEAVLQGLELPYRVMTLSTGDIGFSSAKTYDLEVWLPA 352

Query: 215 DTGETQVFCSKDFMDF 230
                ++    +  DF
Sbjct: 353 QNTYREISSCSNCTDF 368


>gi|294795199|ref|ZP_06760333.1| serine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294453991|gb|EFG22366.1| serine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 426

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +       
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHV---EGTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGGEIFSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                  PE S      +  +   +   L L    +   +G +G   +     E  + A 
Sbjct: 285 MVKL-AKPEDSFKELETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|42519649|ref|NP_965579.1| seryl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|227889410|ref|ZP_04007215.1| seryl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|67461827|sp|Q74HZ5|SYS_LACJO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|41583938|gb|AAS09545.1| seryl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|227850042|gb|EEJ60128.1| seryl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 436

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V+    +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVSNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFTEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I     LP         FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRGKILDGEQLPINVTAFSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     +  E S     K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKI-VDEESSWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRSLIRYRDENGKLHLAH 385


>gi|257462975|ref|ZP_05627379.1| histidyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317060592|ref|ZP_07925077.1| histidyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686268|gb|EFS23103.1| histidyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 413

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/413 (14%), Positives = 127/413 (30%), Gaps = 46/413 (11%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYG 107
            + ++ I ++     G   +  P  +  DL+    G   D   KEM    DR ++++   
Sbjct: 21  YNYISDISKQVFESYGCQFIKTPIFEETDLFKRGIGEATDVVEKEMYTFKDRGNRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +    +     FY     FR E RP+ G  R REF            
Sbjct: 81  PENTASVVRSYLENAIYAKEDVSRFYYNGSMFRYE-RPQAG--RQREFNQIGVEVLGEKS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------------GPIGGDLSHE 209
                    M     ++  RLG+  + +R                      P+  +L  +
Sbjct: 138 PILDAEIIAMG---YKLLQRLGITDLEVRINCIGSNASRTEYRKKLLEYFKPMKEELCED 194

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                +    +V   K        + +          +  E              E    
Sbjct: 195 CKNRLERNPLRVLDCKIDHAKMENAPSIIDSLFEEERAHYEAVKKYLTIFGIPFVEDPGL 254

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAV 328
               +   S    E+      G++ ++     +     +     + ++G  + +  +  +
Sbjct: 255 VRGLDYYSSTV-FEIVTN-KLGSQGTVLGGGRYDNLLKQLGDKDIPAFGFASGVERIMML 312

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E        ++   +              +   +   +I A L +    V  D   +  
Sbjct: 313 LEEYPKKSTDVYLAWL-------------GENTLEKAMEITALLRENNTKVSVDYHSK-- 357

Query: 389 GSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G +     AD L     +I+G   ++ + V +K+  T  +E++S+E ++    
Sbjct: 358 GMKSHMKKADKLNTKYCIILGEDELAKNVVILKNFETREQEEISMENIVRAIK 410


>gi|70731235|ref|YP_260976.1| seryl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|123654458|sp|Q4K9V7|SYS_PSEF5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|68345534|gb|AAY93140.1| seryl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 426

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 10/204 (4%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E   P L  A   V + +   + +++ ++    +  + 
Sbjct: 170 ARLHRALAQFMINLHTGEHGYEEAYTPYLVQAPALVGTSQLPKFEEDLFKITREGEADLY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +   +  +  ++   L L    +   +G +G         E  V +   
Sbjct: 290 QV-VEPSTSMEALEGLTANAEKVLQLLQLPYRVLALCTGDMGFSAVKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        F +
Sbjct: 349 YREISSCSNCGDFQARRMQARFRN 372


>gi|126440240|ref|YP_001059999.1| seryl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|167903832|ref|ZP_02491037.1| seryl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|254298870|ref|ZP_04966320.1| seryl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|166201240|sp|A3NCC8|SYS_BURP6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|126219733|gb|ABN83239.1| serine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|157808968|gb|EDO86138.1| seryl-tRNA synthetase [Burkholderia pseudomallei 406e]
          Length = 433

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + D+   +G+   + ++M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPDVLYGTGQLPKFAEDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIIEASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQIVA-PEASYAALDEMVGHAEAILQKLELPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTESFQARRMQARFRNAQGKPELVH 383


>gi|222823544|ref|YP_002575118.1| seryl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254783014|sp|B9KFN2|SYS_CAMLR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|222538766|gb|ACM63867.1| seryl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 411

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 75/213 (35%), Gaps = 12/213 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   ++VP L +      +G+   +  +M ++    +  + 
Sbjct: 166 GALLSRALVNYMIDFNRSRGFELVNVPFLVNGATMYGTGQLPKFKDDMYKV---ENDDLY 222

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+++ + I +   LP         FR E     +   G++R  +F   +  
Sbjct: 223 LISTSEIPVTNLYSNEILTQEELPLKMTCYSACFRQEAGSAGKDTRGIIRQHQFEKVELV 282

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S    P+ S+  + +M      +   LGL    +   +G +G   +     E  + +   
Sbjct: 283 SI-CKPDQSELMFEEMLNCASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPSQNK 341

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             ++    +  DF        F +    N +V 
Sbjct: 342 YREISSVSNCKDFQARRAKIRFKNDKGKNELVH 374


>gi|321441315|gb|ADW85072.1| glu- + pro-tRNA synthetase [Lacosoma chiridota]
          Length = 134

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +   D  + +YV   S+GI   R +  ++    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEVVYDDPDTHEKNYVFQNSWGIT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             +   D+C+++   L   G     D       
Sbjct: 74  GLVLPPRVADIQAIVVPCGITASSTAEERKALVDSCKQLVDELVAGGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|268320022|ref|YP_003293678.1| hypothetical protein FI9785_1556 [Lactobacillus johnsonii FI9785]
 gi|262398397|emb|CAX67411.1| serS [Lactobacillus johnsonii FI9785]
          Length = 436

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V+    +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVSNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFTEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR  I     LP         FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRGKILDGEQLPINVTAFSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +     +  E S     K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKI-VDEESSWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRSLIRYRDENGKLHLAH 385


>gi|315452620|ref|YP_004072890.1| seryl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315131672|emb|CBY82300.1| seryl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 419

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 8/166 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G   +S P + +      +G+   + +++ ++ D   +++ 
Sbjct: 171 GALVHRALANFMLDSNASRGFEIVSPPVIVNTTTLFGTGQLPKFQEDLFKIED---ESLY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++   I    +LP         FR E     +   G++R  +F   +  
Sbjct: 228 LIPTSEVSLTNLYADEILRVEDLPIMMTACTPCFRKEAGSASKDTHGMIRQHQFDKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           +     E + H   KM  +   I   L L    ++  SG +G   S
Sbjct: 288 AITHPDESA-HMQEKMLEAASAILCALELPHRFVQLCSGDLGFSAS 332


>gi|126652931|ref|ZP_01725073.1| seryl-tRNA synthetase [Bacillus sp. B14905]
 gi|126590261|gb|EAZ84383.1| seryl-tRNA synthetase [Bacillus sp. B14905]
          Length = 426

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYRGLGARLERALMTFMMDLHAEEHGYEEMLPPVIVNRDSLTGTGQLPKFEEDVFKL--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+ +R  I +   LP  F      FR E     R   G++R  +F
Sbjct: 222 EETDYFMIPTAEVPVTNFYRDEILTAEALPQGFAAYSACFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
              +   F + PE S      +     ++   LGL    ++  +  +G         E  
Sbjct: 282 NKVELVRF-VKPEESYEQLELLTGHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEVW 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +F DF     N  F
Sbjct: 341 IPAQNMYREISSCSNFEDFQARRANIRF 368


>gi|320583800|gb|EFW98013.1| Cytosolic seryl-tRNA synthetase, class II aminoacyl-tRNA synthetase
           [Pichia angusta DL-1]
          Length = 464

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 77/212 (36%), Gaps = 16/212 (7%)

Query: 16  RDAEIASHKLMLRT-GMIHQHSKGI-------YSWLPLGQKALDNVNAIIREEQNRTGAI 67
           + A+++ H+++LR  G      +G+       Y     G      +              
Sbjct: 150 KQAKLSHHEVLLRLDGY--DPERGVKIVGHRGYFLRNYGVFLNQALINYGLSFLTSKNYT 207

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            M  P + + D+  ++ +   + +E+ ++ D +D+  +   + + +         +S   
Sbjct: 208 PMQAPVMMNKDVMAKTAQLSEFDEELYKVLDGDDEKYLIATSEQPISAYHSNEWFESPAE 267

Query: 128 -LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  +      FR E     +  +G+ R   F   +       PE S   +++M  +  
Sbjct: 268 QLPIRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKVE-QFCISEPEKSWDEFDRMIQNSE 326

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             +  LGL    +   SG +    + ++ + A
Sbjct: 327 EFYQSLGLPYRVVSIVSGELNNAAAKKYDLEA 358


>gi|303238626|ref|ZP_07325159.1| glycyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593745|gb|EFL63460.1| glycyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 462

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 150/440 (34%), Gaps = 48/440 (10%)

Query: 40  YSWLPLGQKALDNVN-AIIREEQNRTGA-IEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV  A  R+    +   + +    L +  +WV SG    +   ++   
Sbjct: 34  WDYGPLGVELKNNVKKAWWRKFVQESPYNVGVDCAILMNPQVWVASGHVGGFSDPLIDCK 93

Query: 98  D---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           D   R+    +    + E   D  R    +   L     +  +K  +     F  +R  +
Sbjct: 94  DCKTRHRADKMIEDWNAENNLD-VRIDGWTNDQLIEYVKEKGVKCPNCGSANFTDIR--K 150

Query: 155 FLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           F +       +T +     + +      +FV++  +          +    G IG    +
Sbjct: 151 FNLMFKTFQGVTEDSKAEIFLRPETAQGIFVNFKNVQRT---SRKKIPFGIGQIGKSFRN 207

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E      T  T+ F   +   F  P ++ ++ D                  S    +   
Sbjct: 208 EITPGNFTFRTREFEQMELEFFCEPGKDLEWFDYWKNYCFNWLLNLGINQDSLKMRDHEK 267

Query: 269 DSLPENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD--------GKDHYV 312
           + L      +   IE    F +G        T + L    T    D         + +  
Sbjct: 268 EELSHYSNATTD-IEFKFPFGWGELWGIADRTDFDLKQHMTHSKDDLSYFDPTTNEKYVP 326

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRD 363
                 +GA RV  A +  ++D +          + +  ++AP KI+++ +        D
Sbjct: 327 YCIEPSLGADRVTLAFLCDAYDEEEVAEGDVRVVLHFHPAIAPVKIAILPLSKK---LGD 383

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+Y  L+K      +D+ G  IG ++   D +G P  +      + D  V I+ R  
Sbjct: 384 DAYKVYEALTKKYV-CEYDETG-SIGKRYRRQDEIGTPYCITFDFDSLEDKSVTIRDRDN 441

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  + +E++ NY   +F 
Sbjct: 442 MQQVRVKIEDLDNYFEGKFE 461


>gi|293363634|ref|ZP_06610386.1| glycine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552790|gb|EFF41548.1| glycine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 446

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 130/407 (31%), Gaps = 73/407 (17%)

Query: 48  KALDNVN-AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR----LADRNDK 102
           K +  ++  II E+       E     L++ +              M      + + +  
Sbjct: 97  KLIQEIDPEIIPEKMTNLQMQEFLTNNLKTYENSKTDWSSIKQFNLMFETQQGVIEDSKS 156

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
            +   P   + +   F++  +  R  LP    QI   FR+E+ P   + R+REF   +  
Sbjct: 157 KVYLRPETAQGIFVNFKNVSRVTRSKLPMGVGQIGKSFRNEVTPGNFIFRTREFEQMELE 216

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F    E ++  Y             +G+K   +R                  D  E   
Sbjct: 217 VF-CKEEQAQDLYKYYIQKAYNFATLVGIKKDSIRIR--------------EHDKEELSH 261

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           + +                     + I   +   +     + N   FD     K      
Sbjct: 262 YSA-------------------GTSDIEFNFPFGWGELLGIANRTNFDLNAHMKATGE-- 300

Query: 282 IEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-- 338
                            S  +   +  K     +    +G  R++ A+I  +++ + +  
Sbjct: 301 -----------------SLEYLDPETNKKIVPYVIEPSMGLDRLMLAIICDAYELEELEN 343

Query: 339 -------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                   +   ++P+KI+++ +    +       +IY  L        +D+ G  IG +
Sbjct: 344 NDSRIVLKFNKELSPYKIAVLPLVKKLEK---EAREIYNFLLDKNVSATYDETG-SIGKR 399

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +   D +G    +      ++D  V +++R T  +  + +++++ Y 
Sbjct: 400 YRRQDAVGTYWCLTYDYDSLNDQSVTLRNRDTMEQIRIKIKDIVKYL 446


>gi|49475354|ref|YP_033395.1| seryl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|67461759|sp|Q6G419|SYS_BARHE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|49238160|emb|CAF27369.1| Seryl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 425

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+SVP L   +    + +   +  ++ R  D          T
Sbjct: 176 RALGQFMLDVHVYEHGYTEVSVPLLVRDESVYGAAQLPKFADDLFRTTD----GRWLIST 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++  + I    +LP  F  +   FR E     R   G++R  +F   +  S   
Sbjct: 232 AEVPLTNLVNNEILEISDLPLRFSSLTPCFRSEAGSAGRDTRGMLRQHQFWKVEMVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           T E S     +M      +  RL L    M   +G +G
Sbjct: 291 TAEQSLIELERMTECAEDVLKRLDLPFRTMVLSTGDMG 328


>gi|325921976|ref|ZP_08183781.1| seryl-tRNA synthetase [Xanthomonas gardneri ATCC 19865]
 gi|325547526|gb|EGD18575.1| seryl-tRNA synthetase [Xanthomonas gardneri ATCC 19865]
          Length = 449

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 32/215 (14%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--------A 97
            +    +   + +      G  E +VP L +A+    +G+   +  ++ R+         
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNAESMHGTGQLPKFEDDLFRIYEDEYDSQT 230

Query: 98  DRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           D                + A    PT E  +T+I R  I     LP       + FR E 
Sbjct: 231 DEETGEVAHWRTGQIDPEPAYYLIPTSEVPLTNIVRDEIVDAERLPLRMTAHSMCFRAEA 290

Query: 144 ----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
               R   G++R  +F   +  +    PE S   + +M      +  +LGL    +   +
Sbjct: 291 GSGGRDTRGMIRQHQFEKVELVTACA-PEDSDAEHQRMTRCAEVVLEKLGLPYRKVLLCT 349

Query: 200 GPIGGD----LSHEFIVLADTGETQVFCSKDFMDF 230
           G +G         E  + +     ++    +  DF
Sbjct: 350 GDMGFAAIKTYDLEVWLPSQDTYREISSCSNCGDF 384


>gi|284931761|gb|ADC31699.1| Seryl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 420

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 93/262 (35%), Gaps = 15/262 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G + +  +     +  N     E   P + + D +  SG++  + +++ +L   N
Sbjct: 164 IYKKDGARLMRAIQQFCLDV-NADKYEEYLPPVIVNKDSYYGSGQFPKFVEDVFKLEGTN 222

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                   T E  + ++ R+ I    +LP  +      FR E     +   G++R  +F 
Sbjct: 223 ---YYLASTAEVQLVNLHRNEILKEADLPKYYTASTACFRSEAGSAGKDTKGLIRQHQFY 279

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +     + P  SK  +  M     +I   L L    M   +G +G   +     E  +
Sbjct: 280 KTELVKI-VHPSTSKQEHEAMAKDAEKILELLELPYRRMVLCTGDMGFSATKTYDLEVWI 338

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            ++    ++    +  DF     N  F D IS  ++        A   D     + +   
Sbjct: 339 PSENKYREISSISNCGDFQARRANIKFKDAISKKNLYVHTLNASALAHDRLFVAIVE--N 396

Query: 273 ENKRVSARGIEVGHIFYFGTKY 294
             ++  +  I    + YFG +Y
Sbjct: 397 YQQKDGSIKIPKALVKYFGKEY 418


>gi|167825379|ref|ZP_02456850.1| seryl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167895446|ref|ZP_02482848.1| seryl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167920072|ref|ZP_02507163.1| seryl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|226193869|ref|ZP_03789471.1| serine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|225934174|gb|EEH30159.1| serine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
          Length = 433

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + D+   +G+   + ++M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPDVLYGTGQLPKFAEDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVEASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQIVA-PEASYAALDEMVGHAEAILQKLELPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTESFQARRMQARFRNAQGKPELVH 383


>gi|167720765|ref|ZP_02404001.1| seryl-tRNA synthetase [Burkholderia pseudomallei DM98]
          Length = 433

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + D+   +G+   + ++M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPDVLYGTGQLPKFAEDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVEASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQIVA-PEASYAALDEMVGHAEAILQKLELPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTESFQARRMQARFRNAQGKPELVH 383


>gi|53720210|ref|YP_109196.1| seryl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|53725981|ref|YP_103689.1| seryl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|67643953|ref|ZP_00442696.1| serine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|76811815|ref|YP_334445.1| seryl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121599178|ref|YP_992139.1| seryl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124384403|ref|YP_001028583.1| seryl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126450411|ref|YP_001081518.1| seryl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126454758|ref|YP_001067277.1| seryl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134280315|ref|ZP_01767026.1| seryl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|166998315|ref|ZP_02264175.1| serine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167739749|ref|ZP_02412523.1| seryl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816969|ref|ZP_02448649.1| seryl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167851461|ref|ZP_02476969.1| seryl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167912098|ref|ZP_02499189.1| seryl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|217420921|ref|ZP_03452426.1| serine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|237813402|ref|YP_002897853.1| serine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|242317656|ref|ZP_04816672.1| serine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254175570|ref|ZP_04882230.1| seryl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254181010|ref|ZP_04887608.1| seryl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254191854|ref|ZP_04898357.1| seryl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254196127|ref|ZP_04902552.1| seryl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254202385|ref|ZP_04908748.1| seryl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254207717|ref|ZP_04914067.1| seryl-tRNA synthetase [Burkholderia mallei JHU]
 gi|254260671|ref|ZP_04951725.1| serine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254356383|ref|ZP_04972659.1| seryl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|67461699|sp|Q62HY1|SYS_BURMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461707|sp|Q63RS1|SYS_BURPS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123598315|sp|Q3JPQ8|SYS_BURP1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166200607|sp|A3MMN2|SYS_BURM7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166201237|sp|A2S9G4|SYS_BURM9 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166201238|sp|A1V1N6|SYS_BURMS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166201239|sp|A3NY56|SYS_BURP0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|52210624|emb|CAH36608.1| seryl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|52429404|gb|AAU49997.1| seryl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76581268|gb|ABA50743.1| seryl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121227988|gb|ABM50506.1| seryl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124292423|gb|ABN01692.1| serine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126228400|gb|ABN91940.1| seryl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126243281|gb|ABO06374.1| serine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134248322|gb|EBA48405.1| seryl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|147746632|gb|EDK53709.1| seryl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147751611|gb|EDK58678.1| seryl-tRNA synthetase [Burkholderia mallei JHU]
 gi|148025380|gb|EDK83534.1| seryl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157939525|gb|EDO95195.1| seryl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160696614|gb|EDP86584.1| seryl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169652871|gb|EDS85564.1| seryl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184211549|gb|EDU08592.1| seryl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217396333|gb|EEC36350.1| serine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|237505314|gb|ACQ97632.1| serine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238525426|gb|EEP88854.1| serine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242140895|gb|EES27297.1| serine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243065387|gb|EES47573.1| serine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254219360|gb|EET08744.1| serine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 433

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + D+   +G+   + ++M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQQHGYSETYTPYIVNPDVLYGTGQLPKFAEDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVEASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  + ++M      I  +L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQIVA-PEASYAALDEMVGHAEAILQKLELPYRVVALCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTESFQARRMQARFRNAQGKPELVH 383


>gi|47564460|ref|ZP_00235505.1| histidyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47558612|gb|EAL16935.1| histidyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 425

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 143/451 (31%), Gaps = 81/451 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK------------------SIPMRA 197
           +  D     +  E        M +++  +F  L L+                  +IP   
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMCMAF-ELFQTLNLEVTIQYNNRKLLNGILQAINIPTEL 178

Query: 198 ESG---------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS---- 244
            S           IG D   + ++     E       + +   +     DF D  S    
Sbjct: 179 TSDVILSLDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIDDFKDAFSTPLV 238

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF----------GTKY 294
            + + E         +   NE    +    + ++     V  IF            G +Y
Sbjct: 239 TDGVNELQQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDDSITSSIGSGGRY 298

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              + A F+G D  ++     S+G+         I ++   K  I     +   + +I +
Sbjct: 299 DNIIGA-FRG-DNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADVFIIPL 345

Query: 355 KAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVG 407
               Q     C +I  +L     +  ++         G +       A+    P  +I+G
Sbjct: 346 GTELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIG 394

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            + +S   V +++   G    + +  + NY 
Sbjct: 395 EEELSTDTVVLRNMKEGSEVKVPISSINNYL 425


>gi|321441307|gb|ADW85068.1| glu- + pro-tRNA synthetase [Emmelina monodactyla]
          Length = 134

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   D ++  YV   S+G+   R +  +I    D +
Sbjct: 15  SGRGIQGATSHHLGHNFSKIFDIIYDDPDTQEKVYVYQNSWGLT-TRSIGVMILVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ ++             +   DAC+ +   +   G     D       
Sbjct: 74  GLVLPPRVADVQVIVVPCGITASSTAEDRKKLTDACKDLVQDMVXGGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|294496887|ref|YP_003560587.1| seryl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|295702254|ref|YP_003595329.1| seryl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294346824|gb|ADE67153.1| seryl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294799913|gb|ADF36979.1| seryl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 425

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALINFMMDLHMDEHGYEEILPPYMVNRTSMTGTGQLPKFEEDAFKIK 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S   LP  +      FR E     R   G++R  
Sbjct: 223 ---EEDYFLIPTAEVPVTNLHRDEILSGDQLPIAYTAYSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     ++   LGL    +   +  +G   + ++ + 
Sbjct: 280 QFNKVELVRF-VKPEDSYDELEKLTGHAEKVLQLLGLPYRVLSMCTADLGFTAAKKYDIE 338


>gi|120601078|ref|YP_965478.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|166227965|sp|A1V9B1|SYH_DESVV RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|120561307|gb|ABM27051.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 417

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 142/432 (32%), Gaps = 57/432 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEML 94
           KG     P        + ++ R+   R G +E+  P L+  DL+  S   ++    KEM 
Sbjct: 8   KGFADLFPPESDVFTRMESVARQVFGRYGFVELRTPILERTDLFCRSIGTETDVVQKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR D+++   P     +   +    +  +      +     FR E RP+ G  R R+
Sbjct: 68  TFPDRKDRSLTMRPEATAGVMRAYIESGRHTQEPVSKLFTSGPMFRYE-RPQKG--RMRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F   +          +      M    +R    LGL  + ++  S       P+      
Sbjct: 125 FHQINCEVLGPVEPHADAELVLML---MRFLTELGLTGLSLQINSLGCKECRPLYRKALS 181

Query: 209 EFIVLADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +F+   D     E      +      +  +     ++ +    + +   P   T      
Sbjct: 182 DFLASIDNAALCEDCRRRMETNPLRVLDCKVPGCRELTANAPTILEHNCPECRTHFDAVL 241

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV- 324
           ++ DS      ++ R +  G  +Y  T + +   +   G+ G       G Y     ++ 
Sbjct: 242 RILDSRNVPYVLNDRLV-RGLDYYNRTTFEVVSDS--IGSQGS--VAGGGRYDGLISQLG 296

Query: 325 --------VAAVIESSHDGKGIIWPDSVAP---FKISLINIKAHDQVCRDACEKIYARLS 373
                    A  +E       ++ P + AP   F ++++     D   +DA   +   L 
Sbjct: 297 GPDVPGVGFACGMERLA----LMMPGAEAPRPHFHVAVL-----DPAAQDAALLLAEDLR 347

Query: 374 KVGCDVFWDDMGEQIGS-------QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             G           +G        +  +A   G    +I+G   ++   V +K   +G +
Sbjct: 348 AQGL-------AGSVGFGAGSIKSRMRLAGKSGARACLILGGDELAAGTVVVKDMDSGEQ 400

Query: 427 EDMSLEEVINYA 438
           E +  + V    
Sbjct: 401 ETIGRDAVAARL 412


>gi|22126673|ref|NP_670096.1| seryl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45441041|ref|NP_992580.1| seryl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|51595744|ref|YP_069935.1| seryl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108806666|ref|YP_650582.1| seryl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108812762|ref|YP_648529.1| seryl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145599588|ref|YP_001163664.1| seryl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149366636|ref|ZP_01888670.1| seryl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|153948058|ref|YP_001401558.1| seryl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162418210|ref|YP_001606120.1| seryl-tRNA synthetase [Yersinia pestis Angola]
 gi|165924544|ref|ZP_02220376.1| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938994|ref|ZP_02227547.1| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009792|ref|ZP_02230690.1| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211248|ref|ZP_02237283.1| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400076|ref|ZP_02305594.1| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419704|ref|ZP_02311457.1| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424036|ref|ZP_02315789.1| seryl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024906|ref|YP_001721411.1| seryl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186894822|ref|YP_001871934.1| seryl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|218928527|ref|YP_002346402.1| seryl-tRNA synthetase [Yersinia pestis CO92]
 gi|229841348|ref|ZP_04461507.1| Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843453|ref|ZP_04463599.1| Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229895825|ref|ZP_04510995.1| Seryl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229903171|ref|ZP_04518284.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Yersinia pestis Nepal516]
 gi|270486966|ref|ZP_06204040.1| serine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503369|ref|YP_003567431.1| seryl-tRNA synthetase [Yersinia pestis Z176003]
 gi|30173194|sp|Q8ZGC4|SYS_YERPE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461725|sp|Q66CJ9|SYS_YERPS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123072932|sp|Q1CA85|SYS_YERPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123246327|sp|Q1CGF1|SYS_YERPN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166223311|sp|A4TN29|SYS_YERPP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166987319|sp|A7FJY0|SYS_YERP3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238687315|sp|A9R5V2|SYS_YERPG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238688567|sp|B1JRF0|SYS_YERPY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238691445|sp|B2KA12|SYS_YERPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21959689|gb|AAM86347.1|AE013883_1 serine tRNA synthetase [Yersinia pestis KIM 10]
 gi|45435900|gb|AAS61457.1| seryl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|51589026|emb|CAH20644.1| seryl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108776410|gb|ABG18929.1| seryl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|108778579|gb|ABG12637.1| seryl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|115347138|emb|CAL20031.1| seryl-tRNA synthetase [Yersinia pestis CO92]
 gi|145211284|gb|ABP40691.1| seryl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149291010|gb|EDM41085.1| seryl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|152959553|gb|ABS47014.1| seryl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162351025|gb|ABX84973.1| seryl-tRNA synthetase [Yersinia pestis Angola]
 gi|165913141|gb|EDR31765.1| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923604|gb|EDR40736.1| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991188|gb|EDR43489.1| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207019|gb|EDR51499.1| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962445|gb|EDR58466.1| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050784|gb|EDR62192.1| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056885|gb|EDR66648.1| seryl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751440|gb|ACA68958.1| seryl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186697848|gb|ACC88477.1| seryl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|229678941|gb|EEO75044.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Yersinia pestis Nepal516]
 gi|229689800|gb|EEO81861.1| Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697714|gb|EEO87761.1| Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700748|gb|EEO88777.1| Seryl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361409|gb|ACY58130.1| seryl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365054|gb|ACY61611.1| seryl-tRNA synthetase [Yersinia pestis D182038]
 gi|270335470|gb|EFA46247.1| serine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294353828|gb|ADE64169.1| seryl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320015764|gb|ADV99335.1| Seryl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 430

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     ++  + +    + G +E  VP L +      +G+   +G+++
Sbjct: 158 TGARFVVMKGQIARMHRALSQFMLDLHTEKHGYLEAYVPYLVNHATLYGTGQLPKFGEDL 217

Query: 94  LRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                   + ++      PT E  +T++ R  I    +LP         FR E     R 
Sbjct: 218 FHTKPLAEESDNSNYALIPTAEVPLTNLVRDEILEEDSLPLKLTAHTPCFRSEAGSYGRD 277

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +       PE S  +  ++     ++   L L    +   +G +G  
Sbjct: 278 TRGLIRMHQFDKVEMVQI-TRPEDSMAALEELTGHAEKVLQLLELPYRKVLLCTGDMGFG 336

Query: 206 LSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            S     E  + A     ++    +  DF        + + 
Sbjct: 337 SSKTYDLEVWLPAQDTYREISSCSNMWDFQARRMQARYRNK 377


>gi|315142866|gb|ADT81008.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila neilyoungi]
          Length = 105

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 3   RAIQGATSHHLGQNFSKMFEIVFEHPDTVEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 61

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKV 375
           + P  VAP ++ ++         ++  ++  + CE +   L + 
Sbjct: 62  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELREA 105


>gi|256092161|ref|XP_002581846.1| threonyl-tRNA synthetase [Schistosoma mansoni]
 gi|238668125|emb|CAZ38086.1| threonyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 91

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
           + + ++ D   +     P +      ++   I+S++ LP  F    +  R+E      G+
Sbjct: 1   EHLFKI-DVEKQTFGLKPMNCPGHCLMYAKEIRSHKELPLRFADFGVLHRNEFSGALSGL 59

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            R R F   DA+ F    +   +S+  + + Y+
Sbjct: 60  TRVRRFQQDDAHIF-CREDQVTNSFEIVHIIYM 91


>gi|194333565|ref|YP_002015425.1| seryl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|238693328|sp|B4S6M3|SYS_PROA2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194311383|gb|ACF45778.1| seryl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 431

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 85/241 (35%), Gaps = 22/241 (9%)

Query: 9   PILQENPR-DAEI---ASHKLML--RTGMIHQH------SKGIYSWLPLGQKALDNVNAI 56
            I +E    D ++     + L L  R G++           G   +   G +    +   
Sbjct: 125 HIYREKLSFDHKLDFPLDNHLDLGKRLGILDFERGAKITGAGFPVYTAKGARLERALINF 184

Query: 57  IREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           + ++     G  E+  P   + +    +G++  +  ++  +   N+  +   PT E  +T
Sbjct: 185 MLDQHTSVNGYTEVLPPLFVNRESLRGTGQWPKFADQVYYM---NEDNLYAIPTAEVPLT 241

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           ++ R  I    ++P  +      FR E     +   G +R  +F   +   +  TP  S 
Sbjct: 242 NMHRDEILDASDIPLAYAAYTPCFRREAGSYGKDTRGFLRVHQFNKVELVRY-ATPTTSY 300

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL-ADTGETQVFCSKDFMDF 230
            +  ++      I   L +    +   SG I  + +  + +     GE +   +    +F
Sbjct: 301 DALQEILSHAEGILQALKIPYRVLLLCSGDISANATKCYDIEVWAPGEGKFLEASSCSNF 360

Query: 231 P 231
            
Sbjct: 361 E 361


>gi|317495322|ref|ZP_07953692.1| glycyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914744|gb|EFV36220.1| glycyl-tRNA synthetase [Gemella moribillum M424]
          Length = 457

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 110/354 (31%), Gaps = 77/354 (21%)

Query: 105 IYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++  +S  + LPF   QI   FR+E+ P   + R+RE         
Sbjct: 165 YLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRTRE--------- 215

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                F ++ L+   +        G          DT E  +  
Sbjct: 216 ---------------------FEQMELEFFCV-------PGTELDWHKAWKDTCENWLLD 247

Query: 224 SKDFMDF-----PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                +        P E + + +  +       +            +       E+    
Sbjct: 248 LGMTKENIRLRDHDPEELSHYSNATTDIEFKFPFGWGELWGIASRTDYDLKQHMEHSGQD 307

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG- 337
               ++                       + +        +G  RV+ A +  +++ +  
Sbjct: 308 MTYQDLLT--------------------NEKYIPYCIEPSVGVDRVLLAFLCDAYNEEEV 347

Query: 338 --------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                   + +   +AP+K +++ +        D   ++Y++L      V +D+ G  IG
Sbjct: 348 GENDTRTVLKFHPVLAPYKAAILPLSKK---LSDKASEVYSQL-AADFMVDFDETG-SIG 402

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++   D +G P  +    +  +D  V ++ R T  +  +++ E+  Y   R  
Sbjct: 403 KRYRRQDEIGTPFCITYDFESENDGMVTVRERDTMEQTRIAISELKQYIEERVK 456


>gi|313229967|emb|CBY07672.1| unnamed protein product [Oikopleura dioica]
          Length = 673

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 133/429 (31%), Gaps = 77/429 (17%)

Query: 93  MLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELRPRFGV 149
           M R  +     +     P   + +   F+  +  +   LPF   QI   FR+E+ PR G+
Sbjct: 225 MFRSEIGPTGAQPAFLRPETAQGIFLNFKRLLDFNNGKLPFAGAQIGHSFRNEIAPRAGL 284

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---LG----------------- 189
           +R REF M +   F    + S  S + +    L  F +   +G                 
Sbjct: 285 IRCREFQMAEIEHFYDPADASHSSIDSVKELILPFFTKDAQMGGGKLTKCSIGAALKNEV 344

Query: 190 -----LKSIPMR--AESGPIGGDLS-HEFIVLADTGETQVFCSKDF--------MDFPIP 233
                L     R    +  IG D +   F    D                        + 
Sbjct: 345 LCNETLAYFIGRTFLFAKAIGIDPARMRFRQHMDNEMAHYAKDCWDLECRTSYGWVECVG 404

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI------ 287
             +    D+       +              +++F+++P  K+  A+  +          
Sbjct: 405 CADRSCFDLQCHAEASKVNLQAERTLPQPIEKEVFEAIPV-KKFIAKQFKKDTPAVTEAI 463

Query: 288 -----------FYFGTKYSLP------MSATFKGADGKDHY----VQMGSYGIGAMRVVA 326
                      F  G K +L           FK +  K H       +     G  R++ 
Sbjct: 464 QSADASDLEKQFENGEKINLAGFEIGKEMIQFKKSIKKFHTESFTPFVIEPSFGIGRLIY 523

Query: 327 AVIESSHDGK-------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           A +E ++D +           P  VAP+K S++ I    +        I A L       
Sbjct: 524 ACLEHNYDCREKDVERRFFTIPPLVAPYKCSVLPISNKPE-FDPFISTISAGLKNFTLAH 582

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS--DSKVEIKHRLTGIREDMSLEEVINY 437
             D     IG ++A  D +  P  V V    V    + V ++ R +  +  + +++  N 
Sbjct: 583 KVDKSSGSIGKRYARTDEIAVPFGVTVDFHTVKITPATVTLRDRDSLDQIRVPVQDTANL 642

Query: 438 ASHRFSNNR 446
            +   S  +
Sbjct: 643 INDMASQRQ 651



 Score = 41.1 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G++ + P+G    +N+  I R         +E+    +  + +   SG    +   M
Sbjct: 89  AGLFDYGPVGCMLKNNIIDIWRRHFIMNDDMLEVECTMMTPSKVLEASGHAQRFADLM 146


>gi|317151961|ref|YP_004120009.1| histidyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942212|gb|ADU61263.1| histidyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 418

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 14/168 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG     P        +  + R+  +R    E+  P L+  +L+ +S     D  GKEM 
Sbjct: 8   KGFVDLFPEEAAKFTRMETLARDIFSRYAFGELRTPVLEKTELFQKSIGEDTDVVGKEMF 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP---FTFYQIQLKFRDELRPRFGVMR 151
              DR D+++   P   E    + R+ I+S  + P     F+     FR E RP+ G  R
Sbjct: 68  TFPDRKDRSLTMRP---EATAGVVRAFIESGTHQPGKVSKFFTFGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            R+F   +A  F      +      M  ++L     LGL  + +   S
Sbjct: 122 QRQFHQINAEIFGAPEAQADGELILMLRTFLN---ALGLTKLTVELNS 166


>gi|256027996|ref|ZP_05441830.1| seryl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 421

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +  A++   +G+   + ++M
Sbjct: 158 SGSRFVLYRGAAARLERALINFMLDVHTLEEGYTEHITPFMVKAEVCEGTGQLPKFEEDM 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 218 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGKDVKGL 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 274 IRVHQFNKVEMVKI-TDAESSYDELEKMVKNAETILQRLELPYRVIQLCSGDLGFSAAKT 332

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 333 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 376


>gi|126695987|ref|YP_001090873.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166228592|sp|A3PBZ7|SYH_PROM0 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|126543030|gb|ABO17272.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 426

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 138/438 (31%), Gaps = 54/438 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G     P       NV  I+ E+ +R    E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLFPDQLIKWQNVERILLEQLSRASIKEIRTPILEMTELFIRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      +  S   L   +Y +   FR E RP+ G  R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQNGISSNPLQKLWY-MGPMFRYE-RPQAG--RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---EFIV 212
                         S  S  ++      I  +LG+K + +   +     D S+    F+ 
Sbjct: 125 HQLGVEFIGHD---SVRSDVEIIALAWDILSKLGIKELNLEINTLGDTNDRSNFQKSFLK 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                +  +           P    D  +I +   +          +   H+        
Sbjct: 182 WLQANKDSLDLDSQNRISKNPLRILDSKNIQTKKVLENAPRLSNFLSEKSHSRY------ 235

Query: 273 ENKRVSARGIEVGHI-----FYF--GTKY-----------SLPMSATFKGADGKDHYVQM 314
                  R +EV +I     F    G  Y           +L   AT  G    D  ++ 
Sbjct: 236 ---LELKRQLEVLNIPYVENFNLVRGLDYYTHTAFEITSGALGSQATVCGGGRYDDLIKQ 292

Query: 315 GSYGIGAMRVVAAVIE--SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                      A  +E      GK +  P +     I +IN      +       +  +L
Sbjct: 293 MGGPNTPAIGFAIGLERLILLAGKELEIPRN---TDIYIIN---KGLIAESFAMDLSRKL 346

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  D  G     QF  A+ L     +++G     +   E   RL G   + + E
Sbjct: 347 RNYDLLVELDLSGASFSKQFKKANKLKSKSIIVIGDDEAVNG--EFIIRLFGQSGNGNKE 404

Query: 433 EVINY-----ASHRFSNN 445
           EVI++       +  +NN
Sbjct: 405 EVISFENDIKLENWINNN 422


>gi|165976603|ref|YP_001652196.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165876704|gb|ABY69752.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 413

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 138/426 (32%), Gaps = 45/426 (10%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        +   +R      G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 6   PTESPLWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 64

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P                Y N     + +   FR E RP+ G  R R+F      
Sbjct: 65  EQLTLRPEGTAGCVRAAIERGWIYNNE-QRLWYMGPMFRHE-RPQKG--RYRQFHQAGVE 120

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------------DLS 207
            F +           + +   R++  LG+    +  +   IG                 +
Sbjct: 121 VFGIPNPEIDAE---LIILTARLWKELGIDQ-HVSLQLNSIGSLEARANYRSALVKFLEN 176

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H  ++  +  E  V      +D    +     +D   L        +        H    
Sbjct: 177 HTALMSDEEKERLVKNPLRILDTKNQALQEVLNDAPKL-LDYLDDGSREHFAHLCHLLDA 235

Query: 268 FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
                E      RG++     +F       G++ ++     + G       H  Q   + 
Sbjct: 236 MGITYEVNPKLVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGIGFA 295

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           +G  R+V  V E +   K I  P +V    + ++       +      E+I + L ++G 
Sbjct: 296 MGLERLVLLVQEVN---KEINLPKAV---DVYVVYSGEGATLNAFQMAERIRSELPQLGV 349

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVIN 436
                  G     QF  AD +   + +++G   V    V +K   +G  +  ++  ++I 
Sbjct: 350 MTHC--SGGNFKKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVTIAQADLIA 407

Query: 437 YASHRF 442
             + RF
Sbjct: 408 ELTKRF 413


>gi|332296201|ref|YP_004438124.1| Histidyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332179304|gb|AEE14993.1| Histidyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 419

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 156/442 (35%), Gaps = 60/442 (13%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DS 88
           M ++  KG +       K  + +  + ++  N  G  ++  P  + A L+V S G   D 
Sbjct: 1   MNYKAPKGTFDIFGKKAKIYEKIENVSKKIMNLYGFSQIRTPIFEDAGLFVRSLGETSDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY--RNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P   E    + R+ I++   +N P   +     FR E RP+
Sbjct: 61  VQKEMYLFKDKGDRLLALRP---EGTAPVIRAIIENKLAQNSPIKLFYTGQMFRYE-RPQ 116

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F    A         S      +  S ++I   LG++        G +    
Sbjct: 117 AG--RFRQFYQFGAEIVGTHDPISDFE---IIDSSIKILKELGVEYELHLNSVGCMDCRN 171

Query: 207 SHEFIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIIS--LNSIVEQWTAPYAATSDV 262
            ++ ++L      E ++  +     +  P    D  +     + S   + T        +
Sbjct: 172 VYKEVLLTFLKNHENELCENCKTRMYKNPLRVLDCKEDQCKLITSAAPKITDYLCDGCKI 231

Query: 263 HNE------KLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGA---------- 305
           H E      K F           RG++      F    +SL       G           
Sbjct: 232 HFEKLQSYLKKFKIEYILDPRLVRGLDYYTKTAFEALNFSLGSQNAVLGGGRYDGLAEEL 291

Query: 306 DGKDHYVQMGSYGIGAMRVVAAV--IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            GK+       +  G  R+V  +  ++ +++ +           K  +I +  ++    D
Sbjct: 292 GGKNLPGV--GFASGIERLVTILERLDKTYEKE----------HKFMVIPVTENE---FD 336

Query: 364 ACEKIYARLSKVGCDVF-WDDMGEQIGSQFA---VADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  A+L    C +F +D    +   + A     D       V++G   + ++ + +K
Sbjct: 337 FALEFLAQLRNFVCSLFPYDYKNLKSSMKLASKLDCD-----YVVLIGQDEIKNNMISLK 391

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           +   G ++  S +E +N  S+ 
Sbjct: 392 NLENGQQKSFSKDEFLNIISNE 413


>gi|311104420|ref|YP_003977273.1| seryl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310759109|gb|ADP14558.1| seryl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 452

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWL--PLGQKALDNVNAIIREEQN-RTGAIEMSVP 72
           RD       L L   M  + S   +S++  P+  +    ++  + + Q    G  E   P
Sbjct: 145 RDHVAIGEPLGLDFDMAAKLSGARFSFMRGPI-ARLHRALSQFMLDLQTGTHGYTECYTP 203

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA----DRN-----------DKAMIYGPTHEEVMTDI 117
            + +A     +G+   +  +M  ++    D +            +      T E  +T +
Sbjct: 204 YIVNASTLYGTGQLPKFKDDMFAVSKGGGDDDPKVDDQGKPYVREDQYLISTSEITLTSV 263

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
            R  I++  +LP         FR E     R   G++R  +F   +       P+ S  +
Sbjct: 264 ARDTIQAAADLPLKLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQI-TQPDQSYEA 322

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              M     R+   LGL    +   +G +G
Sbjct: 323 LEDMVGHAERVLQLLGLPYRVVLLCTGDMG 352


>gi|262039269|ref|ZP_06012587.1| histidine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261746763|gb|EEY34284.1| histidine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 412

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 135/420 (32%), Gaps = 55/420 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            D +    ++   + G   +  P L+  +L+  S     D   KEM    D+ ++ +   
Sbjct: 19  YDFIVDTAKKVFTKYGFERIITPILEETELFRRSVGDETDVVSKEMYDFKDKGERNVTLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +        +    ++     +R E  P+ G  R REF    A  F +  
Sbjct: 79  PEGTAGVVRAYLEAGLHKSDPVVKWFYNGPMYRYEA-PQKG--RYREFHQIGAEIFGIRS 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLSHEFIV--LADTGET 219
                   KM         +LG+  + +        ES     D   EF+   L    E 
Sbjct: 136 PYLDAEVIKMG---CEFLEKLGITGLTVELNSLGNLESRKKYIDDLKEFMAQRLDKLSED 192

Query: 220 QVFCSKDFM----DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                +       D     +   F D   L   +++ +  Y   +  + E L     EN 
Sbjct: 193 SKKRYEKNPLRALDSKDKGDQEQFKDAPKLYDYLDEESKKYFEDTKRYLEILGVKYVENP 252

Query: 276 RVSARGIEV--GHIFYF-------------GTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +   RG++     +F               G +Y   +       D         + G  
Sbjct: 253 K-LVRGLDYYSDTVFEIKSDKLGAQATVLAGGRYDRLLEIL----DNVKIPAIGFAAG-- 305

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            M   A +++ S               KI ++      +      E+    L K G  V 
Sbjct: 306 -MERAAMLMDES--------LLEQKEEKIYVVYFDETKEYFIKTVEE----LRKKGIKVN 352

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D   +   +Q   A+ +     +I+G +   ++ V +K   TG +E  +L+EVI   + 
Sbjct: 353 FDYNPKSFSAQMKKANKINAEYVLILGEEEQKENVVTLKRFSTGEQEKYNLKEVIEILNK 412


>gi|157813064|gb|ABV81277.1| putative bifunctional aminoacyl-tRNA synthetase [Narceus
           americanus]
          Length = 134

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           + RG++     + G  ++  +   F+  +  +  +V   S+G+ + R + A++    D  
Sbjct: 15  TGRGLQGATSHHLGQNFAKMVDIVFEDPETNEKKFVFQNSWGL-STRCIGAMVMVHGDNT 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G+I P +VA  ++ ++       I   D Q     C++  ARL   G     D       
Sbjct: 74  GLILPPNVACIQVVIVPCGITATISDEDRQSLNTRCKEYEARLVLAGVRCHGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|313902373|ref|ZP_07835776.1| histidyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313467304|gb|EFR62815.1| histidyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 437

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 134/436 (30%), Gaps = 52/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  +G Y   P        + A IR    R G  E+  P +++ +L+  +     D   K
Sbjct: 5   QRPRGTYDVTPEEAPRWQALEARIRHVAARFGFGELRTPVIEARELFQRTVGETTDIVQK 64

Query: 92  EMLRLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM  L     D+ ++  P         +  +       P   + IQ  FR E RP+ G  
Sbjct: 65  EMYVLTPPGSDRQLVLRPEGTAAAVRAYLENGLHNGPQPVKLFYIQPMFRHE-RPQAG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----------- 199
           R R+ +   A  F      +      +    + +F  LGL+ + +   S           
Sbjct: 122 RYRQHVQFGAEIFGAGEATADAE---IIALAMTLFAELGLEGLEVHLNSIGCPACRPRYR 178

Query: 200 -------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                   P   +L  +     +T   ++   K   D P  +      D +  +      
Sbjct: 179 QALLEYYRPRAAELCADCRARLETNPLRLLDCKVPADQPHKAGAPRTVDYLCQDCRAHFD 238

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGA---DGK 308
               A                      RG++      F  KY  L    T  G    DG 
Sbjct: 239 ELQSAL-------DALGIAYRLDPGLVRGLDYYTRTVFEIKYGGLGAQDTVCGGGRYDGL 291

Query: 309 DH-----YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                        +G+G  R+   ++     G+    P +  P    +       QV R 
Sbjct: 292 IELLGGPPTPGVGFGMGLERL---LLTLEAAGRP---PGARRPLDAYVAVAG---QVPRT 342

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L   G  V  D +G  + +Q   A  L     VI+G    +  +  ++   +
Sbjct: 343 RVLALVQALRHQGLAVDMDHVGRSLKAQLRAAGRLPVRYAVILGDDEWARGEAAVRELAS 402

Query: 424 GIREDMSLEEVINYAS 439
           G +  + L E+     
Sbjct: 403 GQQRRVPLGELAAVLR 418


>gi|218887314|ref|YP_002436635.1| seryl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226701585|sp|B8DQP8|SYS_DESVM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218758268|gb|ACL09167.1| seryl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 425

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 12/183 (6%)

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
            +       G +E+  P + +      +G+   + +++ +L           PT E  +T
Sbjct: 180 FLDTHVTEHGYVEIIPPFMVNRKTMTGTGQLPKFEEDLFKL---EGWDYFLIPTAEVPLT 236

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           ++    +     LP  +  +   FR E     +   G++R  +F   +   F   PE S 
Sbjct: 237 NLHADDVLEEAQLPMGYAAMTPCFRSEAGSYGKDTRGLIRQHQFTKVEMVRF-AHPERSF 295

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDF 227
               KM      +  RLGL    +   +G +G   +     E  +       ++    + 
Sbjct: 296 DELEKMRGHAEVLLQRLGLPYRVITLCTGDMGFSSAKTYDIEVWLPGQNAYREISSCSNC 355

Query: 228 MDF 230
            DF
Sbjct: 356 GDF 358


>gi|299135512|ref|ZP_07028696.1| histidyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298601636|gb|EFI57790.1| histidyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 446

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 138/442 (31%), Gaps = 47/442 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           +  +G    LP      + V A  R   +R G  E+  P  ++ +L+        D   K
Sbjct: 15  KAVRGTRDLLPDQTPLWNRVEATARAVFSRYGFGEIRTPVFEATELFARGVGEETDIVSK 74

Query: 92  EMLRLADRNDKAMI------YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           EM    DR   A          P     +   +  H           Y I  +FR E RP
Sbjct: 75  EMFTWEDRARAASEKAQNLTLRPESTAGVVRAYIEHKLGETGQLQKLYYIGPQFRRE-RP 133

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYN--KMFVSYLRIFHRLGLKSIPMRAES---- 199
           + G  R R+F    A        G++      ++      +   LG++   +   S    
Sbjct: 134 QRG--RYRQFWQIGAEVIGPQTSGAESPLRDAEVLEMLASLLDELGIRDWKLELNSVGNA 191

Query: 200 --------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                          P+   +  +    A+T   +V  SK+  D  I +      D +  
Sbjct: 192 EDRARFNVALREALAPVKDRMCPDNQRRAETNPLRVLDSKEEADQEIINALPKIADYLGD 251

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR-GIEVGHIFYFGTKYSLPMSATFKG 304
            S         A  +      +   L        R   E       GT+ +L     + G
Sbjct: 252 ESREHFEQVKAALDACGVPYHVNPRLVRGLDYYTRTTFEFTVTTGLGTQNALLGGGRYDG 311

Query: 305 AD---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP----FKISLINIKAH 357
                G      +G + IG  R++  +   +           +AP      + +  +   
Sbjct: 312 LSEMLGGPKAPGIG-FAIGEDRLILTLQAQAEADAAA---SGIAPTEPKLDVYIAPLGI- 366

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                 A  K+   L + G  V   D   +IG  F  AD L     +++G   V  + + 
Sbjct: 367 --AQNPAALKLARELRREGLSVEVGDGSFKIGKSFGFADKL-ARHIILLGEDEVVTNVLT 423

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           +K   TG +  ++ + + +   
Sbjct: 424 VKTFSTGEQVKVNRDVLADTLR 445


>gi|296332946|ref|ZP_06875404.1| seryl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672711|ref|YP_003864382.1| seryl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296149910|gb|EFG90801.1| seryl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410954|gb|ADM36072.1| seryl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 425

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +     E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPITNMHRDEILSGDSLPINYAAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F + PE S     K+     R+   L L    M   +G +G   + ++ + 
Sbjct: 280 QFNKVELVKF-VKPEDSYGELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIE 338


>gi|288559908|ref|YP_003423394.1| glycyl-tRNA synthetase GlyS [Methanobrevibacter ruminantium M1]
 gi|288542618|gb|ADC46502.1| glycyl-tRNA synthetase GlyS [Methanobrevibacter ruminantium M1]
          Length = 570

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 10/169 (5%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI-------ESSH 333
            +E+   F    K  L      +   G+     +     G  R++   +       E   
Sbjct: 404 TLELDQSFEI-LKEHLLFEDIEEEVKGERIIPHVIEPSFGIDRILYCTLLHSFKTEEDGF 462

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D +   + + +AP ++S+  +   D    +   +I   L + G  V  D  G  IG ++A
Sbjct: 463 DKEYFKFANEIAPIQVSVFPLMNRD-GLGEIATEITHNLREAGFTVDNDTSG-TIGKRYA 520

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            AD +G P+ + V      D  V +++R T  +E + +E++      ++
Sbjct: 521 RADEVGVPIAITVDYDTKEDDTVTVRNRDTEEQERVKIEDLKEVIETKY 569



 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 64/195 (32%), Gaps = 63/195 (32%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESG------ 84
           I+    G   + PLG    +N+    R++     G  E+  PT+   ++   SG      
Sbjct: 22  IYSGVSGFTDYGPLGASLKNNIMQKWRKQYIAGEGFHEIEGPTVMPKEVLKASGHVDNFT 81

Query: 85  -------------RYDSYGKE--------------------------------------- 92
                        R D   +E                                       
Sbjct: 82  DPMTKCKDCGEVFRADHIIEEAIGEDVESLENEEMDEIVRKNDIKCPSCGGELANIWNYN 141

Query: 93  -MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFG 148
            M +     + DK     P   + +  +F+   + ++N LPF   Q+   +R+E+ PR G
Sbjct: 142 LMFKTEIGAKGDKVGYMRPETAQGIFILFKRLSRFFKNKLPFGAVQLGKAYRNEISPRQG 201

Query: 149 VMRSREFLMKDAYSF 163
           V+R REF   +A  F
Sbjct: 202 VIRLREFTQAEAEIF 216


>gi|58337885|ref|YP_194470.1| seryl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|67461604|sp|Q5FIN5|SYS_LACAC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|58255202|gb|AAV43439.1| seryl-tRNA synthetase [Lactobacillus acidophilus NCFM]
          Length = 435

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKDGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTAMSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKICKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|159040920|ref|YP_001540172.1| glycyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|157919755|gb|ABW01182.1| glycyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 590

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHD--GKGIIW--PDSVAPFKISLINIKAHDQVCRD 363
           ++    +     G  R++   +E+++      I+   P  VAP  ++++ I +  ++ + 
Sbjct: 433 ENFIPHVIEPSFGIDRILYVTLENAYALIDGRIVLKLPRDVAPITVAVLPIVSRGELIK- 491

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I   L   G    +DD G  IG+++A  D LG PL V V +  + D+ V ++ R +
Sbjct: 492 VAKDIRINLINEGITAVYDD-GGTIGARYAKWDSLGTPLAVTVDADTLKDNTVTVRDRDS 550

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            ++  + ++++++         
Sbjct: 551 RVQVRVKVQDLVSIIRELLRGK 572



 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 79/249 (31%), Gaps = 30/249 (12%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P   + M   F    +    LP    Q+    R+E+ PR G++R REF   +   F 
Sbjct: 166 YLRPETAQGMFVNFNRIYRIMGKLPMAIAQVGKVGRNEISPRQGLVRLREFSQMEIELFF 225

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
              + S    N +               + +R  +        +E  V++     ++   
Sbjct: 226 DPQDSSCPYINDV-------------NDVKLRLLTEEDVAKGVNEPRVVSAEEAVRMGYV 272

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +       + +  F   + +    + + A        +   ++D +   +R     +EV
Sbjct: 273 ANEWMAFYMALSVKFLKSLGVPEEKQMFIAKLPNERAHYARMVYDHVVYTERFGW--LEV 330

Query: 285 -GHIFYFGTKYSLPMSATFKGAD-------GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            GH +     Y L   +++ G D        +   ++         R     I   +  +
Sbjct: 331 SGHAYR--GDYDLSRHSSYSGQDISAVRRLKEPKVIEEHRVYPNPSR-----IREVYGNE 383

Query: 337 GIIWPDSVA 345
             +   ++A
Sbjct: 384 APLVLKALA 392



 Score = 41.5 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 16/166 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREE----QNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + G Y +  LG     N+    R             E+  P +  + ++  SG  + + 
Sbjct: 27  EAGGFYDYGLLGVLLKRNIIEKWRRMFILPYLEFTY-EVETPVIMPSIVFEASGHVEHFT 85

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR-PRFG- 148
             ++  +    K        EE    + +  IK             L  R+ +R P  G 
Sbjct: 86  DYLVTCSKCGRKYRADHLVEEE----LGKRGIKVKTEGLNEVELTGLIRRNNIRCPACGG 141

Query: 149 -VMRSREFLMKDAYSFDLTPEGS----KHSYNKMFVSYLRIFHRLG 189
            +   ++F +    +     E        +   MFV++ RI+  +G
Sbjct: 142 ELSDVQKFNLLFKTTIGPYSENVGYLRPETAQGMFVNFNRIYRIMG 187


>gi|110667082|ref|YP_656893.1| histidyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121689465|sp|Q18DQ2|SYH_HALWD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|109624829|emb|CAJ51237.1| histidine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 434

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 69/432 (15%), Positives = 126/432 (29%), Gaps = 50/432 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P    A   V  I+     + G  E+  PTL+   ++V +SG  +   +E+  
Sbjct: 6   KGFRDFYPPEMTARRQVIDILETTATQYGFREVGTPTLEQTQMYVDKSG--EGIEEELYA 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
            +D   + +   P     +  +   +    S    P  +   +  +R E   +    R R
Sbjct: 64  FSDDGGRDVTLIPELTPTVARMVVDKQQALS---KPIKWVSTRPFWRYEQVQQ---GRFR 117

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPI-GGDLSHEF 210
           EF   +   F      +           LR    LGL       R     I  G L+   
Sbjct: 118 EFYQTNVDIFGTADPIADAEILAFAADALR---NLGLTASDFEFRVSHRDILSGLLASIT 174

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              AD        + D       +E      D        + +              + +
Sbjct: 175 NDDADIDTRAAIRAVDKRAKIEQAEYHGLLTDAGLSYDQAQSFDDLLTTADLDEIATVGN 234

Query: 270 SLPENKRVSARGI-----EVGHIFYF--------GTKYSLPMSATFKGADGKDHYVQMG- 315
            +      + R +     ++G   +         G  Y   +      A G+      G 
Sbjct: 235 DIVTTAVQNLRSVLAAVDDLGVGEFCDISLTTARGLDYYTGVVFECFDATGEVSRSVFGG 294

Query: 316 --------SYGIGAMRVVAAV-----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                   S+G      V        +       G +WP         ++ +       R
Sbjct: 295 GRYDNLIESFGGQPTPAVGVAPGLAPLSLLCQRAG-VWPTEELTTDYYILTVGD----TR 349

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   L      V  D      G+Q   AD +     +IVG + + + ++ IK   
Sbjct: 350 SVATRIARELRVNKNTVEIDIADRSFGAQMGYADSINAETVIIVGERDLENDEITIKDMN 409

Query: 423 TGIREDMSLEEV 434
           +G +  + +E  
Sbjct: 410 SGDQTTVPVEAF 421


>gi|21220965|ref|NP_626744.1| glycyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|256787874|ref|ZP_05526305.1| glycyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289771758|ref|ZP_06531136.1| glycyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|11387143|sp|Q9L2H9|SYG_STRCO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|6752347|emb|CAB69725.1| glycyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289701957|gb|EFD69386.1| glycyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 460

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 148/444 (33%), Gaps = 60/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++      L 
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFTD---PLT 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSY--RNLPFTFYQIQLKFRDELRPRFGVMRSR-E 154
           +       +   H E   +  + H       +L       +  F  E +   G++ +   
Sbjct: 90  ECTSCHKRFRADHLEEAYEEKKGHAPENGLADLNCPNCGNKGTF-TEPKQFSGLLSTHLG 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                     L PE ++     +F ++ ++                 +G    +E     
Sbjct: 149 PTQDSGSVAYLRPETAQ----GIFTNFAQVQTT---SRRKPPFGIAQMGKSFRNEITPGN 201

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T+ F   +   F  P E+  + +       +EQ    Y           +   P  
Sbjct: 202 FIFRTREFEQMEMEFFVKPGEDEKWQEYW-----MEQRWNWYTGLGLREENMRWYEHPAE 256

Query: 275 K--RVSARGIEVGHIFYFG-------------TKYSLPMSAT-------FKGADGKDHY- 311
           K    S R  ++ + F FG             T Y L   A        +   + ++ + 
Sbjct: 257 KLSHYSKRTADIEYRFSFGGSEWGELEGVANRTDYDLSSHAKASGQDLSYYDQEAQERWT 316

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHD 358
             +     G  R + A +  ++                 +     ++P K++++ +  + 
Sbjct: 317 PYVIEPAAGVGRAMLAFLLDAYIEDEAPNAKGKLEKRTVLRLDPRLSPVKVAVLPLSRNP 376

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      + +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V +
Sbjct: 377 E-LSPKAKGLAQALRQ-NWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTV 433

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +E +SL+++  Y + R 
Sbjct: 434 RERDTMKQERVSLDQIEGYLASRL 457


>gi|296166319|ref|ZP_06848756.1| glycyl-tRNA synthetase beta subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898328|gb|EFG77897.1| glycyl-tRNA synthetase beta subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 496

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/392 (14%), Positives = 111/392 (28%), Gaps = 92/392 (23%)

Query: 82  ESGRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             G++    +  M+       +        +   T + +  +       + +  PF   Q
Sbjct: 165 TKGQWTEPREFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANIVTTARKKPPFGIGQ 224

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           I   FR+E+ P   + R+REF            E  +  +                    
Sbjct: 225 IGKSFRNEITPGNFIFRTREF------------EQMEMEF-------------------- 252

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          F+  +   E   +        +     N +   +    +      
Sbjct: 253 ---------------FVEPSTAKEWHQYWIDTRHQWYVDLGINPENLRLFEHPAEKLSHY 297

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------- 306
           +      +       +   E + V+ R           T + L   A   GAD       
Sbjct: 298 SDRTVDIEYKFGFAGNPWGELEGVANR-----------TDFDLSTHAKHSGADLSYYDQV 346

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLI 352
               +   +     G  R   A +  ++                 +     +AP K +++
Sbjct: 347 TDTRYTPYVIEPAAGLTRSFMAFLIDAYTEDQAPNAKGVMEKRTLLRLDPRLAPVKAAVL 406

Query: 353 NIKAHDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +  H          + A L      D  +DD G  IG ++   D +G P  V V    +
Sbjct: 407 PLSRH-ADLSPKARDLAAELRTCWNID--FDDAGA-IGRRYRRQDEVGTPFCVTVDFDSL 462

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D+ V ++ R    +E +++  V +Y + R  
Sbjct: 463 EDNAVTVRRRDDMTQERVAMNAVGDYLAARLK 494


>gi|53803953|ref|YP_114403.1| seryl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|67461697|sp|Q606P5|SYS_METCA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|53757714|gb|AAU92005.1| seryl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 427

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 12/193 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G IE  VP L +AD    +G+   + +++ ++   ++    
Sbjct: 170 ARLQRALTQFMLDIHTGEHGYIETYVPFLVNADSLRGTGQLPKFEEDLFKVQ--HEPVFY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPVTNLVRDEIVEEERLPLKYVCHTPCFRSEAGSYGRDVRGLIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+ ++  +      I  RLGL    +   +G  G   +     E  +     
Sbjct: 288 QI-VRPEDSREAHEALTRHAEVILERLGLPYRRVLLCAGDTGFSSAKTYDLEVWLPGQQS 346

Query: 218 ETQVFCSKDFMDF 230
             ++    +F DF
Sbjct: 347 YREISSCSNFRDF 359


>gi|293381923|ref|ZP_06627889.1| seryl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|290921510|gb|EFD98546.1| seryl-tRNA synthetase [Lactobacillus crispatus 214-1]
          Length = 435

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKEGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKVCEPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|134295006|ref|YP_001118741.1| seryl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166201241|sp|A4JCA3|SYS_BURVG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|134138163|gb|ABO53906.1| seryl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 433

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 69/216 (31%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +      G  E   P + + ++   +G+   +  +M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTQLHGYSETYTPYIVNPEILYGTGQLPKFADDMFRVEKGGAENTI 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRESIVDASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       P+ S  + ++M      I  +LGL    +   +G +G   +     E  + A
Sbjct: 289 EMVQVVA-PDTSYAALDEMVGHAEAILQKLGLPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTEAFQARRMQARFRNAQGKPELVH 383


>gi|307250431|ref|ZP_07532378.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306857560|gb|EFM89669.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 423

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 138/426 (32%), Gaps = 45/426 (10%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        +   +R      G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P                Y N     + +   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIERGWIYNNE-QRLWYMGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------------DLS 207
            F +           + +   R++  LG+    +  +   IG                 +
Sbjct: 131 VFGIPNPEIDAE---LIILTARLWKELGIDQ-HVSLQLNSIGSLEARANYRSALVKFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H  ++  +  E  V      +D    +     +D   L        +        H    
Sbjct: 187 HTALMSDEEKERLVKNPLRILDTKNQALQEVLNDAPKL-LDYLDDGSREHFAHLCHLLDA 245

Query: 268 FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
                E      RG++     +F       G++ ++     + G       H  Q   + 
Sbjct: 246 MGITYEVNPKLVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGIGFA 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           +G  R+V  V E +   K I  P +V    + ++       +      E+I + L ++G 
Sbjct: 306 MGLERLVLLVQEVN---KEINLPKAV---DVYVVYSGEGATLNAFQMAERIRSELPQLGV 359

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVIN 436
                  G     QF  AD +   + +++G   V    V +K   +G  +  ++  ++I 
Sbjct: 360 MTHC--SGGNFKKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVTIAQADLIA 417

Query: 437 YASHRF 442
             + RF
Sbjct: 418 ELTKRF 423


>gi|91070259|gb|ABE11178.1| histidyl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           HF10-11H7]
          Length = 426

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 137/438 (31%), Gaps = 54/438 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G     P       NV  I+ E+ +R    E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLFPDQLIKWQNVEKILLEQLSRASIKEIRTPILEMTELFIRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             DR +++    P     +   + ++ I S  +     + +   FR E RP+ G  R R+
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQNGISSNPH--QKLWYMGPMFRYE-RPQAG--RQRQ 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---EFI 211
           F              S  S  ++      I  +LG+K + +   +     D S+    F+
Sbjct: 124 FHQLGVEFIGHD---SVRSDVEIIALAWDILGKLGIKELNLEINTLGDTNDRSNFQKSFL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +T +  +           P    D  +I +   +          +   HN       
Sbjct: 181 KWLETNKDSLDLDSQNRISKNPLRILDSKNIQTKKVLENAPRLFNFLSEKSHNRY----- 235

Query: 272 PENKRVSARGIEVGHI-----FYF--GTKY-----------SLPMSATFKGADGKDHYVQ 313
                   R +EV  I     F    G  Y           +L   AT  G    D  ++
Sbjct: 236 ----LDLKRQLEVLKIPYVENFNLVRGLDYYTHTAFEITSGALGSQATVCGGGRYDDLIK 291

Query: 314 MGSYGIGAMRVVAAVIE--SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                       A  +E      GK +  P +     I +IN      V       +  +
Sbjct: 292 QMGGPNTPAIGFAIGLERLILLAGKELEIPRN---TDIYIINQGL---VAESLAMDLSRK 345

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIRE 427
           L      V  D  G     QF  A+ L     +++G     + +  I+           E
Sbjct: 346 LRNYDLLVELDLSGASFSKQFKKANKLKSKSIIVIGDDEAVNGEFIIRLFDQSGNGNEEE 405

Query: 428 DMSLEEVINYASHRFSNN 445
            +S E  I    +  +NN
Sbjct: 406 VISFENDI-KLENWINNN 422


>gi|333008793|gb|EGK28253.1| seryl-tRNA synthetase [Shigella flexneri K-272]
 gi|333020323|gb|EGK39589.1| seryl-tRNA synthetase [Shigella flexneri K-227]
          Length = 430

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++        + +       PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLAEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|329123605|ref|ZP_08252165.1| histidine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|327469804|gb|EGF15269.1| histidine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 423

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 147/429 (34%), Gaps = 51/429 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQVGVE 130

Query: 162 SFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK-----------SIPMRAESGP--IGGDLS 207
            F    PE        + +   R++  LG+            S+  RA      +G   +
Sbjct: 131 VFGIANPEIDAE----LIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H+ ++  +  E  V      +D   P      D+    L+ + ++  A +     + +  
Sbjct: 187 HQDLMSDEEKERLVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAV 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G + ++     + G       H      +
Sbjct: 247 GIQYEINPKL--VRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
            +G  R+V  V E +        P   A   + +  +   +       +  EK+ + L  
Sbjct: 305 AMGLERLVLLVQEVN-----PNVPAKSA---VDIYVVYQGEGATLAAFELAEKVRSELP- 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEE 433
              +      G     QF  AD  G  L +++G   V +  V +KH   G  ++ + L  
Sbjct: 356 -HLNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKLVVVKHLQGGADQQTLDLVN 414

Query: 434 VINYASHRF 442
           VI+Y   +F
Sbjct: 415 VIDYIQTQF 423


>gi|167837523|ref|ZP_02464406.1| seryl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 433

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDK 102
            +    +   + +    + G  E   P + + D+   +G+   + ++M R+      N  
Sbjct: 169 ARLHRALAQFMLDTHTLQHGYSETYTPYIVNPDVLYGTGQLPKFAEDMFRVEKGGAENTV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+  R  I     LP         FR E     R   G++R  +F   
Sbjct: 229 TQYLISTSEISLTNTVRDSIVEASALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +     +TPE S  + ++M      I  +L L    +   +G +G   +     E  + A
Sbjct: 289 EMVQI-VTPEASYAALDEMVGHAEAILQKLELPYRVITLCTGDMGFSAAKTFDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        F +      +V 
Sbjct: 348 QNTYREISSCSNTESFQARRMQARFRNAQGKPELVH 383


>gi|254428921|ref|ZP_05042628.1| seryl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195090|gb|EDX90049.1| seryl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 429

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 15/234 (6%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKAL--DNVNAIIREEQ-NRT 64
             L   PRD       L             G    +  G  A     +   + +   +  
Sbjct: 134 KTLPFEPRDHVDVGEALDGGLDFERAAKLSGARFSVMSGGLARMHRALIDFMLDMHSDEH 193

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+ VP L   +    +G+   + +++ ++    ++ +   PT E  +T++    I  
Sbjct: 194 GYQEVYVPFLVGPEALRGTGQLPKFAEDLFKM--EGERELYLIPTAEVPVTNLAADEILE 251

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              +P  +      FR E     +   G++R  +F   +     +  E S  +   +   
Sbjct: 252 ADTMPRRYTCHTPCFRSEAGSHGKDTRGMIRQHQFEKVELVQM-VRAEESDAALEALTGH 310

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
              +  +L L    +    G +G   S     E  + +     ++    +F D+
Sbjct: 311 AEAVLQKLDLPYRVVILCGGDLGFSSSKTYDIEVWLPSQQRYREISSCSNFQDY 364


>gi|94676816|ref|YP_588766.1| seryl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|166200602|sp|Q1LTE8|SYS_BAUCH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94219966|gb|ABF14125.1| seryl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 430

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 10/173 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-- 103
            +    ++  + +    + G  E  +P L +      +G    + +++  +   N +   
Sbjct: 170 ARLYRALSQFMLDLHTQQHGYEEYYLPYLVNRTSLYGTGHLPKFYEDLFHIQSINKENIS 229

Query: 104 --MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
                 PT E  + ++ R  I     LP         FR E     R   G++R  +F  
Sbjct: 230 NIYTLIPTAEVPLINLLRDKIFDENILPLKMTANTPCFRAEAGSYGRDTHGLIRMHQFDK 289

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            +     + PE S  +  +M     ++   L L    +   +G  G   S  +
Sbjct: 290 VEMVQ-AIKPEHSMIALEEMTKHAEKVLQLLNLHYRKVLLCTGDTGFASSKTY 341


>gi|229018548|ref|ZP_04175407.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1273]
 gi|229024804|ref|ZP_04181240.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1272]
 gi|228736515|gb|EEL87074.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1272]
 gi|228742760|gb|EEL92901.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1273]
          Length = 430

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 141/442 (31%), Gaps = 67/442 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         + REF
Sbjct: 67  LKDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGKFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L                ES  I  +L
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLDVTIQYNNRKLLNGILESINIPTEL 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D        +  D I    +              +N  
Sbjct: 179 TSDVILSLDKIE-KIGIDGVRKDILERGITVEMADTICTTVLSCLKLTIADFKETFNNPL 237

Query: 267 LFDSLPENKRVSAR----GIEVGHIF----------YFGTKY----SLPMSATFKGADGK 308
           + D + E +++       GI    IF          Y GT Y    +     +  G+ G+
Sbjct: 238 VTDGVEELQQLQQYLSALGINENTIFNPFLARGLTMYTGTVYEIFLTDASITSSIGSGGR 297

Query: 309 DHYVQ-------MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +        M    +G    +  +  +    + I +        + +I +    Q  
Sbjct: 298 YDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETISFTA-----DVFIIPLGTELQ-- 350

Query: 362 RDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSDS 414
              C +I  +L     +  ++         G +       A+    P  +I+G + +S  
Sbjct: 351 ---CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTE 401

Query: 415 KVEIKHRLTGIREDMSLEEVIN 436
            V +++   G    +SL  + N
Sbjct: 402 TVVLRNMKEGTEVKISLSSLEN 423


>gi|296329009|ref|ZP_06871516.1| serine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153902|gb|EFG94713.1| serine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 421

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +  A++   +G+   + ++M
Sbjct: 158 SGSRFVLYRGAAARLERAIINFMLDVHTLEEGYTEHITPFMVKAEVCEGTGQLPKFEEDM 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 218 YKTTD----DMYLISTSEITMTNIHRKEILEQAELPKYYTAYSPCFRREAGSYGKDVKGL 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 274 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 332

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 333 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 376


>gi|289765941|ref|ZP_06525319.1| seryl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289717496|gb|EFD81508.1| seryl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 424

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +  A++   +G+   + ++M
Sbjct: 161 SGSRFVLYRGAAARLERALINFMLDVHTLEEGYTEHITPFMVKAEVCEGTGQLPKFEEDM 220

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 221 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGKDVKGL 276

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 277 IRVHQFNKVEMVKI-TDAESSYDELEKMVKNAETILQRLELPYRVIQLCSGDLGFSAAKT 335

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 336 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 379


>gi|282878742|ref|ZP_06287510.1| glycine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299133|gb|EFA91534.1| glycine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 533

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 72/511 (14%), Positives = 148/511 (28%), Gaps = 101/511 (19%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV- 71
           +I SH      G +   S        +Y +   G +   N+     +         + + 
Sbjct: 9   KIVSHCK--EYGFVFPSSDIYDGLAAVYDYGQNGVELKKNIKEYWWKSMVLLHDNIVGID 66

Query: 72  -PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                   +W  SG  D++      L D  D    Y      +   I +   K  + +  
Sbjct: 67  SAIFMHPTIWKASGHVDAFND---PLIDNRDSKKRYRADV-LIEDQIAKYEEKIDKEVAK 122

Query: 131 TFYQIQLKFRDELRPRFGVMR--------------------------------------- 151
              +    F DE + R    R                                       
Sbjct: 123 AAKRFGDAF-DEAKFRATNQRVLDHQAKRDALHERYTQAMQGPDLAELKQIIVDEGIVDP 181

Query: 152 ---------SREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFH--RLGLKSIP 194
                     R+F +  +       + +   Y +      +FV+YL +    R+ L    
Sbjct: 182 ISGTKNWTDVRQFNLMFSTEMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKLPFGI 241

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--- 251
            +     IG    +E +        + F   +   F  P    ++        +      
Sbjct: 242 AQ-----IGKAFRNEIVARQFIFRMREFEQMEMQFFVKPGTELEWFKQWKQTRMAWHQAL 296

Query: 252 --------WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSAT 301
                   +          +     +           GI     F      K+S      
Sbjct: 297 GFGAENYRFHDHEKLAHYANAATDIEFKMPFGFKEVEGIHSRTNFDLSQHEKFSGKNLKY 356

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLI 352
           F     + +   +    IG  R+  +V+  S+  + +           P ++AP K +++
Sbjct: 357 FDPETSESYVPYVIETSIGVDRMFLSVMCHSYQEEELENGEKRVVLRLPAALAPVKCAVM 416

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +    +   +   +I   L K   +  +D+  + IG ++   D +G P  V V    + 
Sbjct: 417 PLVRK-EGLPEKAREIVDLL-KFHFNTSYDE-KDSIGKRYRRQDAVGTPYCVTVDFDTLE 473

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D+KV ++HR T  ++ + + E+ +    + S
Sbjct: 474 DNKVTLRHRDTMEQQRVDISELCSVIEEKVS 504


>gi|160872440|ref|ZP_02062572.1| histidyl-tRNA synthetase [Rickettsiella grylli]
 gi|159121239|gb|EDP46577.1| histidyl-tRNA synthetase [Rickettsiella grylli]
          Length = 427

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 9/159 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP       NV  ++R   N+ G  E+ +P L+  DL+    G   D   K
Sbjct: 6   QAIRGMNDILPAQNFIWQNVEKVLRNLVNQYGYQEIRLPILEKTDLFKRCIGHVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y  +   ++ +   FR E RP+ G  R
Sbjct: 66  EMYTFIDRNGESLSLRPEGTAGCVRAGVEHGLFYNQI-QRWWYLGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            R+F       F +           M     R +  L L
Sbjct: 122 YRQFHQWGVEVFGIAQAYIDAELILM---TARFWKELKL 157


>gi|42521723|ref|NP_967103.1| seryl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|67461781|sp|Q6MRK1|SYS_BDEBA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|39574253|emb|CAE77757.1| serS [Bdellovibrio bacteriovorus HD100]
          Length = 431

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 76/209 (36%), Gaps = 13/209 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + ++   + G  EM  P + +++  + +G +  + +++  L       +   PT
Sbjct: 182 RALIQFMMDKHSMKHGYTEMIPPFMVNSNSLLGTGNFPKFKEDVFHL---EGSDLYLIPT 238

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+ + + I   ++LP +F      FR E     R   G++R  +F   +   F  
Sbjct: 239 AEVPVTNYYNNEILDEKDLPQSFCAYSPCFRSEAGSAGRDTKGLIRQHQFDKVELMVF-A 297

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
            P+ S   +  +     +I   L L    +   +G +G   +     E  +       ++
Sbjct: 298 HPDKSHEVHEALTSHAEQILMDLELPFRRVLLCTGDMGFGSAKTYDLEVWLPGQNAYREI 357

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +F DF     N  F         V 
Sbjct: 358 SSCSNFEDFQARRANIRFRSAGGKPQFVH 386


>gi|299542086|ref|ZP_07052402.1| seryl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298725401|gb|EFI66049.1| seryl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 426

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYRGLGARLERALMTFMMDLHAEEHGYEEMLPPVIVNRDSLTGTGQLPKFEEDVFKL--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F
Sbjct: 222 EETDYFMIPTAEVPVTNFYRDEILPAEALPQGFAAYSACFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
              +   F + PE S      +     ++   LGL    ++  +  +G         E  
Sbjct: 282 NKVELVRF-VKPEESYEQLELLTSHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEVW 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +F DF     N  F
Sbjct: 341 IPAQNMYREISSCSNFEDFQARRANIRF 368


>gi|148262370|ref|YP_001229076.1| seryl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|189083570|sp|A5GD47|SYS_GEOUR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|146395870|gb|ABQ24503.1| seryl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 422

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTL 74
           R A++A  +  L  G               G +    +   + +        +EM  P +
Sbjct: 152 RGAKLAGARFTLYKGF--------------GARLERALINFMLDLHTERHKYLEMLPPFM 197

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            + +    +G+   + +++              PT E  +T+I R  I    +LP  +  
Sbjct: 198 VNRESMTGTGQLPKFEEDLF---HMEGVDYFLIPTAEVPVTNIHRGEILKAADLPLCYTA 254

Query: 135 IQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
               FR E     +   G++R  +F   +   F + P  S +  +K+  +   +   LGL
Sbjct: 255 YTPCFRKEAGSYGKDTRGLIRQHQFNKVELVKF-VHPAHSYNELDKLLDNAEEVLRLLGL 313

Query: 191 KSIPMRAESGPIGGDL 206
               +   +  IG   
Sbjct: 314 PYRVVDLCTADIGFSA 329


>gi|326440043|ref|ZP_08214777.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 420

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 136/440 (30%), Gaps = 52/440 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            Q  +G Y  LP        V   I      +G   +  P  ++ +L+        D   
Sbjct: 4   FQAPRGTYDLLPPDSATFLAVREAIAAPLKNSGYGYVETPGFEAVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++   LP   +     +R E +P+ G
Sbjct: 64  KEMYAFETKGGTKLALRPEG-TASVLRAALEANLHKQGVLPVKLWYSGSYYRYE-KPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL+   +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLRHFRILLNSLGDQECRPV 176

Query: 203 GGDLSHEFIVLADTGE--------------TQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
             +   EF+   D  E                            PS      D       
Sbjct: 177 YREALQEFLRGLDLDEETRRRVEINPLRVLDDKRPEVRRQLTGAPSLRDSLCDGCRAYHQ 236

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-- 306
             +     A  S   +EKL   L    R      E  H    G++ ++     + G    
Sbjct: 237 EVRELLTEAGVSFEDDEKLVRGLDYYTRT---TFEFVHDG-LGSQSAVGGGGRYDGLSEM 292

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R V A+     +G  +  P + + F + L       +  R A 
Sbjct: 293 LGGPALPSVG-WALGVDRTVLAL---QAEGVSLELPPATSVFAVPL------GEEARRAL 342

Query: 366 EKIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +  RL + G    +     G + G+   VA   G    V+ G + +++  V++K+  +
Sbjct: 343 FGVVTRLRRAGVAADFAYGGRGLK-GAM-KVAHRSGARYTVVAGERDLAEGVVQLKNMES 400

Query: 424 GIREDMSLEEVINYASHRFS 443
           G +  + L  V++      +
Sbjct: 401 GEQRPVPLSTVVDELGALLA 420


>gi|320534185|ref|ZP_08034713.1| glycyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133595|gb|EFW26015.1| glycyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 463

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 74/454 (16%), Positives = 144/454 (31%), Gaps = 79/454 (17%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     +   R+    + +    +   ++WV SG   ++     E L
Sbjct: 35  WDYGPLGVELKENIKRQWWQYMVRSRDDVVGLDSSVILPREVWVASGHVGAFTDPLVESL 94

Query: 95  RLADR-------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
               R        D A   G   E V  D+    +             Q     E R   
Sbjct: 95  HTHKRYRADQLVEDYAARKGLDPEAVTLDMVPDPVTG-----------QPGSWTEPREFS 143

Query: 148 GVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGG 204
           G++++    + D      L PE ++  +            +   G+         G +G 
Sbjct: 144 GLLKTYLGPVDDESGLHYLRPETAQGIFINFTNVMSAARKKPPFGI---------GQVGK 194

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +E         T+ F   +   F  P  + ++              A Y       +
Sbjct: 195 SFRNEITPGNFIFRTREFEQMELEFFCEPGTDEEWHQYWIDYR-----KAWYTDLGISED 249

Query: 265 EKLFDSLPENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--- 306
                  P  K    S R +++ + F F              T + L   A   G D   
Sbjct: 250 NLRLYEHPTEKLSHYSKRTVDLEYRFGFAGSEWGELEGIANRTDFDLSTHAEHSGKDLSY 309

Query: 307 -----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFK 348
                 +     +     G  R + A +  ++                 +     +AP K
Sbjct: 310 FDQTRSERWTPYVIEPSAGLTRSLMAFLVEAYTEDEAPNTKGGVDKRIVLKLAPRIAPVK 369

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +   +++     +++ ARL +   +V +DD G  +G ++   D +G P  +    
Sbjct: 370 AAVLPLSRKEELTGP-AKELAARLRRSW-NVEYDDAGA-VGRRYRRQDEVGTPFCLTYDF 426

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               D  V ++ R T  +E + LE V  Y + R 
Sbjct: 427 DSPEDGAVTVRERDTMTQERIPLEGVERYLAERL 460


>gi|294811572|ref|ZP_06770215.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294324171|gb|EFG05814.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 426

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 136/440 (30%), Gaps = 52/440 (11%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            Q  +G Y  LP        V   I      +G   +  P  ++ +L+        D   
Sbjct: 10  FQAPRGTYDLLPPDSATFLAVREAIAAPLKNSGYGYVETPGFEAVELFARGVGESTDIVT 69

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++   LP   +     +R E +P+ G
Sbjct: 70  KEMYAFETKGGTKLALRPEG-TASVLRAALEANLHKQGVLPVKLWYSGSYYRYE-KPQKG 127

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL+   +   S       P+
Sbjct: 128 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLRHFRILLNSLGDQECRPV 182

Query: 203 GGDLSHEFIVLADTGE--------------TQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
             +   EF+   D  E                            PS      D       
Sbjct: 183 YREALQEFLRGLDLDEETRRRVEINPLRVLDDKRPEVRRQLTGAPSLRDSLCDGCRAYHQ 242

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-- 306
             +     A  S   +EKL   L    R      E  H    G++ ++     + G    
Sbjct: 243 EVRELLTEAGVSFEDDEKLVRGLDYYTRT---TFEFVHDG-LGSQSAVGGGGRYDGLSEM 298

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G      +G + +G  R V A+     +G  +  P + + F + L       +  R A 
Sbjct: 299 LGGPALPSVG-WALGVDRTVLAL---QAEGVSLELPPATSVFAVPL------GEEARRAL 348

Query: 366 EKIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +  RL + G    +     G + G+   VA   G    V+ G + +++  V++K+  +
Sbjct: 349 FGVVTRLRRAGVAADFAYGGRGLK-GAM-KVAHRSGARYTVVAGERDLAEGVVQLKNMES 406

Query: 424 GIREDMSLEEVINYASHRFS 443
           G +  + L  V++      +
Sbjct: 407 GEQRPVPLSTVVDELGALLA 426


>gi|71280601|ref|YP_269467.1| seryl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|123632220|sp|Q480Q2|SYS_COLP3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71146341|gb|AAZ26814.1| seryl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 426

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 19/248 (7%)

Query: 17  DAEIASHKLMLRT---GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAI 67
           D E+  H  +  +   G+  +      G    +  G+ A     +   + +      G  
Sbjct: 133 DFEVKDHVDLGFSVDKGLDFESGAKLAGTRFVVMRGKIARLHRAIAQFMLDTHTEEHGYQ 192

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           EM VP L +A     +G+   +G+++    D ++K     PT E  +T++ R  I    +
Sbjct: 193 EMYVPYLVNAASLYGTGQLPKFGEDLFH-TDLSNKKFSLIPTSEVPLTNLVRDEIVDEDD 251

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +     + PE S  + +++      
Sbjct: 252 LPIKMTAHTPCFRSEAGSGGRDIRGLIRQHQFDKVEMVQI-VKPETSMTALDELTRHAEI 310

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           I  +L L    ++  SG +G   +     E  + A     ++    +   F        F
Sbjct: 311 ILEKLELPYRTVQLCSGDVGFSAAKTFDLEVWLPAQDTYREISSCSNMGAFQARRMQARF 370

Query: 240 DDIISLNS 247
            +  +   
Sbjct: 371 RNNETNKP 378


>gi|260776632|ref|ZP_05885527.1| histidyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607855|gb|EEX34120.1| histidyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 422

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 137/430 (31%), Gaps = 34/430 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +   ++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKLENAVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHI-KSYRNLP-FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I  S  +      + +   FR E RP+ G 
Sbjct: 66  EMYTFDDRNGDSLTLRP---EGTAGCVRSCIENSLIDRSEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+    +R E   IG      
Sbjct: 121 -RYRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGID-KHVRLELNSIGSLEDRA 175

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A     +        D            + + N  V+         SD   E+   
Sbjct: 176 NYRTALIAFLEQHIDVLDDDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKQ 235

Query: 270 SL-PENKRVSARGIEVGHIFYF--GTKY---------SLPMSATFKGADGKDHYVQMGSY 317
                 + + A GIE         G  Y         +  + A      G  +   +   
Sbjct: 236 HFAGLCELLDAAGIEYTVNERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQL 295

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSK 374
           G  A   V   +      + ++  +++    +     + +    +    A  K+   L +
Sbjct: 296 GGKATPAVGFAMGL---ERLVLMLETLELTDVRRSVDVYMVTAGEGTMMAGMKLAELLRE 352

Query: 375 V--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V     G     QF  AD +G  + +++G   V+D+ V +K  + G +E     
Sbjct: 353 QVPGIRVMNHFGGGNFKKQFKRADKVGAAVALVLGENEVADNTVVLKDLIGGTQETYGQA 412

Query: 433 EVINYASHRF 442
           +V    +   
Sbjct: 413 DVAAKLAELV 422


>gi|289208071|ref|YP_003460137.1| seryl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943702|gb|ADC71401.1| seryl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 429

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 18/201 (8%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGA 66
            PRD       L L  G +   +     G    +  G+ A     +   + +    + G 
Sbjct: 135 APRDHV----DLGLPGGWLDFEAAVRVAGSRFVVMRGEMARLHRALTQFMLDLHTQQHGY 190

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E  VP L + +    +G+   + +++  +    D+     PT E  +T++ R  I    
Sbjct: 191 QETYVPYLANPESLEGTGQLPKFDEDLFSVDC--DQRFRLIPTAEVTLTNLVREQILEAG 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +     + PE S+ +  ++     
Sbjct: 249 ALPLKMTAHTPCFRSEAGSYGRDVRGLIRQHQFEKVELVQV-VHPEQSEAALEELLGHAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIG 203
            +   L L    M   +G +G
Sbjct: 308 AVLQALELPYRVMLLSTGDMG 328


>gi|283784715|ref|YP_003364580.1| seryl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282948169|emb|CBG87736.1| seryl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 430

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +    TG+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHTGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDLLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKIVLCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|227902950|ref|ZP_04020755.1| seryl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|227869299|gb|EEJ76720.1| seryl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 441

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 169 FVYYIGAGALLERAVFNFFLDENTKDGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVD 228

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 229 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTAMSPAFRSEAGSAGRDTRGLI 288

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 289 RMHEFRKVEMVKICKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 347

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 348 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 391


>gi|148272762|ref|YP_001222323.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830692|emb|CAN01632.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 461

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 69/467 (14%), Positives = 149/467 (31%), Gaps = 76/467 (16%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVE 82
            + + G I+  S+  + + PLG    +N+     +         + +    +    +W  
Sbjct: 19  FVFQAGEIYGGSRSAWDYGPLGVALKENIKRQWWQTMVNGRDDVVGLDSSVILPRRVWEA 78

Query: 83  SGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           SG  + +     E L    R     +    +E        + +   ++        Q   
Sbjct: 79  SGHVEVFSDPLVESLHTHKRYRADHLLEA-YEAKHGHPPVNGLADVKDPDTG----QPGS 133

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHR------LG 189
             E +   G++++  FL           EG       +   +FV++  +          G
Sbjct: 134 WTEPQNFSGLLKT--FLGP-----VDNQEGMHYLRPETAQGIFVNFANVLSAARQKPPFG 186

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +         G IG    +E         T+ F   +   F  P  + ++          
Sbjct: 187 I---------GQIGKSFRNEITPQNWIFRTREFEQMEMEFFVEPGTDAEWHQYWIDARYA 237

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSL 296
                     +    E       +    S R +++ + F F              T Y L
Sbjct: 238 WYTDLGIDPENLRLFEH---PAEKLSHYSTRTVDIEYRFGFAGGAWGELEGIANRTDYDL 294

Query: 297 PMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----------- 337
              +   G D         +     +     G  R + A +  ++               
Sbjct: 295 RTHSEASGQDLSYFDQTKNERWIPYVIEPAAGLTRSMMAFLVDAYHEDEAPNAKGGVDKR 354

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +     +AP K++++ + + ++       ++ A L KV  ++ +DD G  IG ++   
Sbjct: 355 TVLRLDRRLAPVKVAVLPL-SRNEKLSPVARELAAELRKVW-NIEFDDAGA-IGRRYRRQ 411

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +G P  V V    + D  V ++ R T  +E + L++++ Y + + 
Sbjct: 412 DEIGTPFCVTVDFDTLDDRAVTVRERDTMAQERIPLDDLMGYLAGQL 458


>gi|237743593|ref|ZP_04574074.1| seryl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229432624|gb|EEO42836.1| seryl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 424

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +  A++   +G+   + ++M
Sbjct: 161 SGSRFVLYRGAAARLERALINFMLDVHTLEEGYTEHITPFMVKAEVCEGTGQLPKFEEDM 220

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 221 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGKDVKGL 276

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 277 IRVHQFNKVEMVKI-TDAESSYDELEKMVKNAETILQRLELPYRVIQLCSGDLGFSAAKT 335

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 336 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 379


>gi|296125535|ref|YP_003632787.1| histidyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296017351|gb|ADG70588.1| histidyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 415

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 130/415 (31%), Gaps = 45/415 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
           L+ + + I++     G   +  P  +  DL+        D  GKEM    DR  +++   
Sbjct: 21  LEFIESKIKDIVKLYGYGRIRTPLFEYTDLFTRGIGEGTDIVGKEMFTFEDRGGRSLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +           + +   +R E RP+ G  R REF          T 
Sbjct: 81  PEGTASVARAYVENSMQNEFAINKLFYLGTMYRAE-RPQKG--RYREFNQFGVECIGGTS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHEFIVLADTGETQVFCSKD 226
                    + +  + +    G+ ++ +   + G      S+   +    G  +    + 
Sbjct: 138 PLIDAE---IILLNINVLKEFGIDNVNLLINTVGCSKCKPSYNNALKEAIGSRKDELCET 194

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                  +     D          +    +        ++ FD L +      +   V H
Sbjct: 195 CQKRYEGNILRILDCKNEKCKETIKDIPKFYDYVCDECKEHFDKLCDELTRIGQNFTVDH 254

Query: 287 IFYFGTKY---------SLPMSAT--------FKG-----ADGKDHYVQMGSYGIGAMRV 324
           +   G  Y         +  + A         +        +GKD         +G  R+
Sbjct: 255 MLVRGLDYYTKTAFEVQTNALGAQSAILGGGRYDNLIGLFNNGKDVPAV--GSAMGIERL 312

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +   ++     I  D +    + ++  K  +        K+   L        +D  
Sbjct: 313 LLVLESQNN-----IITDRL---DVFIVAFKETENNVL----KVMQTLRANNISCDYDFA 360

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + + SQF  A+       +++G   +     ++K+  TG  +++SL ++ +   
Sbjct: 361 CKSVKSQFKSANKRNAKYALVLGEDELKREMCKLKNMDTGEEKEVSLNDIHSNIK 415


>gi|328464544|gb|EGF35915.1| seryl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 435

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSQAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|310657365|ref|YP_003935086.1| seryl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308824143|emb|CBH20181.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Clostridium sticklandii]
          Length = 425

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 9/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +   ++            G  E+  P + +   ++ +G+   + ++M +L   
Sbjct: 165 LYKDLGARLERSLINFFLNTHTAEHGYTEVLPPFIANRTSFIGTGQLPKFEEDMFKL--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+I ++ I +  +L   +      FR E     R   G++R  +F
Sbjct: 222 EGFEYFLVPTAEVPVTNIHQNEIMNGDDLTTKYCAYTPCFRAEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +   F   PE S      +     ++   LGL    +R  SG +G   ++++
Sbjct: 282 NKVELVKF-TKPEDSYKELETLTADAEKVLQLLGLPYRVVRICSGDLGFTAAYKY 335


>gi|290473945|ref|YP_003466819.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Xenorhabdus bovienii SS-2004]
 gi|289173252|emb|CBJ80027.1| serine tRNA synthetase; also charges selenocystein tRNA with serine
           [Xenorhabdus bovienii SS-2004]
          Length = 429

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 73/217 (33%), Gaps = 15/217 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +    + G +E  VP L + +    +G+   +G+++
Sbjct: 158 TGSRFVVMKGQIARLHRALAQFMLDLHTEQHGYLETYVPYLVNHETLYGTGQLPKFGEDL 217

Query: 94  L---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPR 146
                L +         PT E  +T++ R  I     LP         FR E     R  
Sbjct: 218 FHTNPLEEETGSNYALIPTAEVPVTNLVRGDILDESALPLKMTAHTPCFRSEAGSYGRDT 277

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD- 205
            G++R  +F   +       PE S  +  ++     ++   L L    M   +G +G   
Sbjct: 278 RGLIRMHQFDKIELVQI-AHPEKSMDALEELTGHAEKVLQLLKLPYRKMLLCTGDMGASA 336

Query: 206 ---LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                 E  + A     ++    +  DF        F
Sbjct: 337 RKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQARF 373


>gi|221633715|ref|YP_002522941.1| seryl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|254783499|sp|B9L131|SYS_THERP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|221156826|gb|ACM05953.1| seryl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 445

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 19/235 (8%)

Query: 37  KGIYSWLPLG--QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G   ++  G   +    + A + +   N  G +E+  P L   +  + +G    +G  +
Sbjct: 157 AGSRFYVLRGDLARLQRALIAWMIDLHVNEHGYLEVYPPFLVRREAMIGTGNLPKFGDNL 216

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
                  +  +   PT E  +T++FR  I    +LP         FR E     R   G+
Sbjct: 217 Y---HDEETDLWLIPTAEVPVTNLFRDEILPPGSLPIYLVAATPCFRKERVSAGRDVRGI 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R  +F   +   F + P+ S     ++      +  RL L    ++  +G        +
Sbjct: 274 KRVHQFEKVEMVKF-VEPDRSDEELQRLVADAEDVLRRLELPYRVVQMCTG--------D 324

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               A         +    ++   S  ++F D  +  + +    +  A    VH 
Sbjct: 325 LSFTAAKKFDLEVWAPGSQEWLEVSSCSNFRDFQARRANIRYRPSEGARPQFVHT 379


>gi|161485661|ref|NP_603020.2| seryl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|30173182|sp|Q8RH11|SYS_FUSNN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 421

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +  A++   +G+   + ++M
Sbjct: 158 SGSRFVLYRGAAARLERAIINFMLDVHTLEEGYTEHITPFMVKAEVCEGTGQLPKFEEDM 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 218 YKTTD----DMYLISTSEITMTNIHRKEILEQAELPKYYTAYSPCFRREAGSYGKDVKGL 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 274 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 332

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 333 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 376


>gi|330805610|ref|XP_003290773.1| hypothetical protein DICPUDRAFT_49409 [Dictyostelium purpureum]
 gi|325079086|gb|EGC32704.1| hypothetical protein DICPUDRAFT_49409 [Dictyostelium purpureum]
          Length = 443

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 8/179 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-- 96
            Y    +G      +         + G   +  P     ++  E+ + + + +E+ ++  
Sbjct: 167 CYFLKGIGVLLNQAIINFALTYLTKKGYTALQTPFFMKKEIMAETAQLEQFDEELYKVVG 226

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
            A   +       T E+ ++   R      + LP  +      FR E     R  +G+ R
Sbjct: 227 GAAGEENEKYLIATSEQPISAFHRGEWLDEKELPKRYVGYSTCFRKEAGSSGRDTWGIFR 286

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             +F   +       PE S     +M  +  + +  LG+    +   SG +    S ++
Sbjct: 287 VHQFEKIE-QFCVTEPEKSWDMMEEMISNSEQFYQELGIPYRVVNIVSGALNNAASKKY 344


>gi|288958288|ref|YP_003448629.1| seryl-tRNA synthetase [Azospirillum sp. B510]
 gi|288910596|dbj|BAI72085.1| seryl-tRNA synthetase [Azospirillum sp. B510]
          Length = 423

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 74/204 (36%), Gaps = 19/204 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQN-RTG 65
            NP+      ++L    G++   +     G    +  G  A     +   + +      G
Sbjct: 133 ANPKQH----YELGEALGLMDFEAAARMSGARFTVLKGGLARLERALADFMLDIHTSEHG 188

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P +        +G+   + +++ +    +       PT E  +T++    I + 
Sbjct: 189 FTEIAPPLMVRDTALFGTGQLPKFEEDLFKTTASD---HYLIPTSEVPLTNLVNDQIVAA 245

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP  +  +   FR E     R   G++R  +F   +  +    P+ S+  + +M    
Sbjct: 246 EELPLRYTALTPCFRAEAGSAGRDTRGMIRQHQFWKVEMVAITA-PDQSEDEHQRMTRCA 304

Query: 182 LRIFHRLGLKSIPMRAESGPIGGD 205
             I  RLGL    +   +G +G  
Sbjct: 305 ETILERLGLPYRTIVLCTGDMGFS 328


>gi|51209886|ref|YP_063550.1| histidine-tRNA synthetase [Gracilaria tenuistipitata var. liui]
 gi|68052941|sp|Q6B910|SYH_GRATL RecName: Full=Histidyl-tRNA synthetase, chloroplastic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|50657640|gb|AAT79625.1| histidine tRNA synthetase [Gracilaria tenuistipitata var. liui]
          Length = 420

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 123/429 (28%), Gaps = 32/429 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DS 88
              Q  +G    LP       +++       +     E+  P ++S  L+  S G   D 
Sbjct: 4   YFMQPLRGTKDILPNEINYWHHIHDKALTILSLHNYSEIRTPIIESTSLFKRSIGETSDI 63

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++   P     +   F S+   + N+    + +   FR E RP+ G
Sbjct: 64  INKEMYTFTDQGDRSITLRPEATASIARAFISNKLYHSNI-QRLWYLGPMFRYE-RPQSG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F              +      +     ++   L +K+  +   S  IG     
Sbjct: 122 --RQRQFHQLGIECIGSINPMADTE---VIHLANQLLKELQVKNYILEINS--IGTLEER 174

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA---ATSDVHNE 265
           +   L        +      D      +     + S N   ++            +  + 
Sbjct: 175 QSYKLDLVEYLSQYQQDLDQDSKNRMYSNPLRILDSKNLKTQEILDGAPKLKKYLNKRST 234

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + F  +           ++ +    G  Y             + ++     G Y     +
Sbjct: 235 EHFYLVCTYLNNLNITYKINYKLVRGLDYYNQTAFEIKTNSKNSQNTICGGGRYDTLIEQ 294

Query: 324 V-------VAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +       V   I            +I P      KI++          +   E I A L
Sbjct: 295 LGGPKTPAVGWAIGIERLLKIIEDKLILPKQ----KINVYIATQGLAAQKKIWEIIQA-L 349

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K       D        Q   A  LG    +I+G + + D+ V IK     ++      
Sbjct: 350 EKKNIKFELDLSNTSFHKQIKKAGKLGAKFCIILGDQEIMDNCVTIKRLDEYVQYTAQYS 409

Query: 433 EVINYASHR 441
             +      
Sbjct: 410 NFLQEIHKL 418


>gi|302336158|ref|YP_003801365.1| histidyl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301319998|gb|ADK68485.1| histidyl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 437

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 138/447 (30%), Gaps = 77/447 (17%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV--ESGRYDSYGKEMLRL-------- 96
            +A  ++  + RE     G   +  P ++  D +V       D   KEM R+        
Sbjct: 16  MRAWQHMQDVARELLGTYGFDMIETPAIEQVDTFVHGIGASTDVVRKEMFRVFSGALMER 75

Query: 97  -----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR----NLPFTFYQIQLKFRDELRPRF 147
                ++   KA        E    + R+ +++        P   +     FR E RP+ 
Sbjct: 76  LLESGSEGGLKAKQRMAMRPEGTAGVVRAAVENNFVPQGGAPAKLWYAGAMFRGE-RPQK 134

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--- 204
           G  R R+F          +   +      M    +  + RLG  +  ++     +G    
Sbjct: 135 G--RLRQFHQVGVEWLGASDPAADAESIIML---MEFYKRLGFPAERLQLRINSMGDAEC 189

Query: 205 -------------DLSHEFIV----LADTGETQVFCSKDFMDFPI----PSENTDFDDII 243
                        D + E        A+    + F  K+     +    P    +  D  
Sbjct: 190 RPAYRASVRQFILDHADEMCEDCLERAEINPLRAFDCKNDRCREVMATAPLAKDNLCDGC 249

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV----SARGIEVGHIFYFGTKYSLPMS 299
           +++    +     A  + V +  L   L    R        G  VG I   G +Y   M 
Sbjct: 250 AIHYAKVKQYLDEAGVTYVEDPTLVRGLDYYTRTVFEVECEGSRVGAIGG-GGRYDGLME 308

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAV----IESSHDGKGIIWPDSVAPFKISLINIK 355
                  GK        + +G  R+  A+    ++   +  G ++             + 
Sbjct: 309 L----EGGKPTPGI--GFAVGFERMCLALRSLGVDVEGEDPGCVY-------------VA 349

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 RDA       L   G     D  G  + SQF  AD LG  L V++GS  ++   
Sbjct: 350 CTSAAERDAVFSATLALRGAGVRTEADYQGRSLKSQFKQADKLGARLCVVLGSDEIAAGV 409

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
             ++   T  +  + + E+      + 
Sbjct: 410 ATLRDMRTHEQGRVPMGELAARVVEKL 436


>gi|262305727|gb|ACY45456.1| glu- + pro-tRNA synthetase [Eurytemora affinis]
          Length = 134

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S     TF+  + G+  +V   S+G+   R +  ++    D  G+
Sbjct: 17  RAIQGATSHHLGQNFSKMFDITFENPETGEKQFVFQNSWGLT-TRTIGVLVMVHGDNNGL 75

Query: 339 IWPDSVAPFK------ISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
           + P  VA  +         +N+ A D +     CE    RL+K G  V  D       G
Sbjct: 76  VLPPKVACLQVVVVPCGVTVNLSAQDREALYAECEGYRERLTKAGVRVKADMRENYSPG 134


>gi|54293502|ref|YP_125917.1| seryl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|67461679|sp|Q5WZ31|SYS_LEGPL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|53753334|emb|CAH14781.1| hypothetical protein lpl0551 [Legionella pneumophila str. Lens]
          Length = 426

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 83/243 (34%), Gaps = 19/243 (7%)

Query: 20  IASHKLMLRT--GMIHQHSK---GIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           + SH  +      M    +    G    +  G  A     +   + +    + G  E+ V
Sbjct: 136 VKSHDELGEALGQMDFALAAKITGSRFVVMKGHLARLHRALIQFMLDIHIQQHGYQEIYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +AD  + +G+   +  ++ +L    D       T E  +T+  R  I S   LP  
Sbjct: 196 PYIVNADSLLGTGQLPKFEADLFKLT--GDNGYYLTSTSEIPVTNTVREMILSAEQLPIR 253

Query: 132 FYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +      FR E     +   G++R  +F   +   +   PE S ++  ++      I  R
Sbjct: 254 YVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVE-LVWITKPEDSYNALEQLTQHAEVILQR 312

Query: 188 LGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           L L    +   +G IG   +     E  + +     ++    +   F        F +  
Sbjct: 313 LKLPYRVVALCTGDIGAGSAKTYDLEVWLPSQNTYREISSCSNMEAFQARRMKARFRNPD 372

Query: 244 SLN 246
           +  
Sbjct: 373 TNE 375


>gi|77409694|ref|ZP_00786359.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77171692|gb|EAO74896.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 69

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1  MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKXKTIMRQE 60


>gi|329938954|ref|ZP_08288328.1| histidyl tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301839|gb|EGG45732.1| histidyl tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 420

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 137/435 (31%), Gaps = 44/435 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  LP        V   I      +G   +  P  +S DL+        D   
Sbjct: 4   FKAPKGTYDLLPPDSATFLAVREAIARPLRNSGYGYIETPGFESVDLFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++  NLP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDRLALRPEG-TASVLRAALEANLHKAGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL+   +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLRGFRVLLNSLGDKECRPV 176

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +F+   D  E  +  ++      +  +  D    ++   I+  +          
Sbjct: 177 YRAALQDFLRGLDLDEETLRRAEINPLRVLDDKRPDVQKQLTDAPILRDYLCDACKAYHE 236

Query: 263 HNEKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKGAD---GK 308
              +L  +         R             E  H    G++ ++     + G     G 
Sbjct: 237 EVRELLRAAGVAFEDDPRLVRGLDYYTRTTFEFVHDG-LGSQSAVGGGGRYDGLSEMIGG 295

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +G + +G  R V A+     + +GI  P   +   +  + +    +  R      
Sbjct: 296 PALPSVG-WALGVDRTVLAL-----EAEGIELPLP-SVTSVYAVPLG---EEARRVLFAK 345

Query: 369 YARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L ++G    +   G+ + G+    A+  G    ++ G + +++  V++K   +G + 
Sbjct: 346 VTELRRLGIATDFAYGGKGLKGAM-KNANRSGARYAIVAGERDLAEGVVQLKDMESGEQA 404

Query: 428 DMSLEEVINYASHRF 442
            + L E++     R 
Sbjct: 405 PVGLNEIVAELETRL 419


>gi|325954605|ref|YP_004238265.1| seryl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437223|gb|ADX67687.1| seryl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 422

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     ++       E+  P + +      +G+      +M  
Sbjct: 162 GAGFPVYKGKGARLQRALIQYFLDKNTAADYQEIIPPFVVNEASGYGTGQLPDKEGQMYY 221

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +    +  +   PT E  +T+I+R  I     LP         FR E     +   G+ R
Sbjct: 222 VK---EDDLYLIPTSEVPVTNIYRDVILRDEELPLKHTAYSPCFRREAGSYGKDVRGLNR 278

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
             +F   +       PE S  + ++M      +   L L    +R  +G  G    ++++
Sbjct: 279 LHQFEKVEIVRI-EKPENSMAALDEMVEHVKGLLEELDLPYRILRLCAGDTGFASSITYD 337

Query: 210 FIVLADTGETQV 221
           F V +   E  +
Sbjct: 338 FEVFSQAQEKWL 349


>gi|227894178|ref|ZP_04011983.1| seryl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227864019|gb|EEJ71440.1| seryl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 435

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKEGYTEVIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHGSKLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|300311235|ref|YP_003775327.1| seryl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|124483334|emb|CAM32540.1| Seryl-tRNA synthetase [Herbaspirillum seropedicae]
 gi|300074020|gb|ADJ63419.1| seryl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 16/219 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DR 99
            +    +   +        G  E   P + +AD    +G+   +  ++          + 
Sbjct: 169 ARLHRALAQFMLNTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGEA 228

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            + A+   PT E  +T+  R  I +   LP  F      FR E     R   G++R  +F
Sbjct: 229 ENAALYLIPTAEVPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQF 288

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +     + PE S  + ++M      I  +LGL    +   +G +G   +     E  
Sbjct: 289 DKVEMVQI-VHPEQSYDALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVW 347

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           + A     ++    +   F        F +      ++ 
Sbjct: 348 LPAQKTYREISSVSNCEAFQARRMQARFRNAQGKPELLH 386


>gi|57239182|ref|YP_180318.1| seryl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579140|ref|YP_197352.1| seryl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81819249|sp|Q5HB76|SYS_EHRRW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|57161261|emb|CAH58182.1| seryl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417766|emb|CAI26970.1| Seryl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 427

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P L         G+   +  +  +  D         PT
Sbjct: 173 RALANFMLDVHTQEFGYSEISHPVLVHESAMYGVGQLPKFADDSFKTTDN----FRLIPT 228

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++  +   +   LP         FR E     +   G+MR  +F   +  S  +
Sbjct: 229 SEVALTNLVSNTNTNANELPIRLTACSQCFRSEAGSAGKDVRGMMRQHQFNKVELVSI-V 287

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----HEFIVLADTGETQV 221
           T E S+    +M      I  +L L    M   +G +G   S     E  + +     ++
Sbjct: 288 TEEQSELELERMTQVAEEILKKLELPYRVMMLCTGDLGFSASITYDIEVWIPSQNQYREI 347

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               +   F     N  +  I + N + +   
Sbjct: 348 SSCSNCKAFQARRMNAKYHTISNGNKVNKFVH 379


>gi|331698238|ref|YP_004334477.1| glycyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952927|gb|AEA26624.1| glycyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 465

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 67/463 (14%), Positives = 137/463 (29%), Gaps = 97/463 (20%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEM---- 93
           + + PLG +  +N+               + +    +    +WV SG    +   +    
Sbjct: 37  WDYGPLGVELKENIKRQWWRTMVTGREDVVGLDSSVILPRQVWVASGHVGVFNDPLVECL 96

Query: 94  -----LR--------------LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF-Y 133
                 R               A  +D + +  P          R      ++       
Sbjct: 97  SCHKRFRADQLAEEYVERTGKTASEDDLSDVPCPNCGT------RGQYTPPQDFNMMLET 150

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            +     DE     G+   R                   +   +FV++L +         
Sbjct: 151 HLGPVKTDE-----GLHYLR-----------------PETAQGIFVNFLNVQTT---SRK 185

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                 G +G    +E         T+ F   +   F  P  + +               
Sbjct: 186 KPPFGIGQMGKSFRNEITPGNFIFRTREFEQMEMEYFVEPGTDEELHQYWIDERTRWYTD 245

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG-------------TKYSLPMSA 300
              A  +  H E   +   +    S R +++ + F F              T + L   +
Sbjct: 246 LGIARENLRHYEHPKE---KLSHYSKRTVDIEYRFEFTGQEWGELEGIANRTDFDLTTHS 302

Query: 301 TFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------II 339
              G D        G  +   +     G  R + A +  ++                 + 
Sbjct: 303 NHSGVDLSFYDQASGTRYRPYVIEPAAGVGRSMMAFLIEAYTEDEAPNAKGGVDKRVVLR 362

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +AP K +++ + + +         + A L +   +V +DD G  IG ++   D +G
Sbjct: 363 LDRRLAPVKAAVLPL-SRNADLSPKARDLAAALRR-NWNVEFDDAGA-IGRRYRRQDEIG 419

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            P  + V    ++D  V I+ R T  +E ++L++V +Y + R 
Sbjct: 420 TPFCITVDFDTLTDQAVTIRERDTMSQERIALDQVESYLAARL 462


>gi|317495625|ref|ZP_07953992.1| seryl-tRNA synthetase [Gemella moribillum M424]
 gi|316914244|gb|EFV35723.1| seryl-tRNA synthetase [Gemella moribillum M424]
          Length = 426

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 83/263 (31%), Gaps = 22/263 (8%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G      +   + +      G  E  VP L +      +G++  + +++  + 
Sbjct: 163 FVFYKKAGALLERALINFMIDTHVIEHGYEEYMVPQLVNKTALFGTGQFPKFVEDVYTVE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 +   PT E  +T+ + + I S   LP       + FR E     R   G++R  
Sbjct: 223 SEG---LTLIPTAEVPLTNYYNNEILSEDMLPKGVTAFSICFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F   PE S      M      I  +L L    +   SG  G   +     E
Sbjct: 280 QFNKVEMVRF-AKPENSYEQLEIMTEHAENILKKLNLPYRVITLCSGDTGFSSAKTYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW---------TAPYAATS 260
             + +     ++    +  DF     N  F    +                     A   
Sbjct: 339 VWLPSYDAYKEISSCSNCTDFQARRANMRFKREDTGKVEFIHTLNGSGLAVGRCLAAIIE 398

Query: 261 DVHNEKLFDSLPENKRVSARGIE 283
           +  NE    ++PE  R   RG+E
Sbjct: 399 NYQNEDGSITIPEVLRPYMRGLE 421


>gi|311894343|dbj|BAJ26751.1| putative seryl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 420

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    + + + +      G +EMSVP L + +    +G+   +  ++       ++ +
Sbjct: 161 GARLERALASFLLDLHTREHGYVEMSVPHLVTRESMTATGQLPKFADDLFGTRAA-EREL 219

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  + ++FR    S   LP         FR E     R   GV+R  EF   + 
Sbjct: 220 FLIPTAEVPLVNLFRGETLSSAALPLAVTAHTACFRSEAGSYGRDTRGVIRLHEFAKVEL 279

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                  + ++H +  +         RLGL    +   +G +G   
Sbjct: 280 VRLCA-AQDARHEHEVLLGHAEEALRRLGLHYRVVELRTGDLGFSA 324


>gi|260063153|ref|YP_003196233.1| histidyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|257796362|gb|EAR14033.2| histidyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 460

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 79/471 (16%), Positives = 150/471 (31%), Gaps = 91/471 (19%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--- 92
            KG   + P      +++   IRE+  R G   +  P+ ++ D  +       YG+E   
Sbjct: 8   PKGTRDFSPQEVARRNHIIGAIREQFERFGFQPIETPSFENYDTLM-----GKYGEEGDR 62

Query: 93  -MLRLADRND-----KAMIYGPTHEEVMTDIFRSHIKSY----------------RNLPF 130
            + ++ +  D      A +        +T         Y                 + PF
Sbjct: 63  LIFKILNSGDFLKKADATVLQDKDSAGLTPQIAEKALRYDLTVPFARYVVMHQNEIDFPF 122

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQIQ  +R + RP+ G  R REF   DA     T    +  +      Y R+F  LGL
Sbjct: 123 KRYQIQPVWRAD-RPQRG--RFREFYQCDADVVGATGLIQEAEF---IQLYDRVFASLGL 176

Query: 191 KSIPMRAESGPIGG---------DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD--- 238
             + ++     +           D   +F V  D    ++   K   +      + +   
Sbjct: 177 NGVTIKLNHRKVLSGIAEVIGAADRLTDFTVALDK-LDKIGREKVEAEMEEKGISREAIR 235

Query: 239 ----FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI------- 287
                 D+    S          A S    + + +           G+E G         
Sbjct: 236 KAAPLFDLSGEASGQLAALRGLLAKSPTGLQGVEELEELLDLTRQMGLEAGKCVLDVTLA 295

Query: 288 ----FYFGTKYSLPMSAT-----------FKGADG----KDHYVQMGSYGIGAMRVVAAV 328
               +Y GT + +    T           +    G    +D      S+G+     +  V
Sbjct: 296 RGLNYYTGTIFEVAAPETVQMGSIGGGGRYDDLTGIFGLRDVSGVGISFGLD---RICLV 352

Query: 329 IESSHDGKGIIWPDSV-APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +E        ++P+++     +  IN    +        ++  RL   G          +
Sbjct: 353 MEELG-----LFPETLDRALDVFCINFGPEEARS---ALRLVMRLRSRGIRADLYPNDAK 404

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G QF  AD    P  V++G + +   +  ++    G ++   L+   ++A
Sbjct: 405 VGKQFKYADKRDVPFVVLIGDEELRKGEFTVRDMRGGGQQSYPLDAWEDFA 455


>gi|325294499|ref|YP_004281013.1| histidyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064947|gb|ADY72954.1| Histidyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 410

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 132/424 (31%), Gaps = 30/424 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  +  +G+   +P   +  + V    +   N+ G  E+ +P  + A L+  S     D 
Sbjct: 1   MEFKAVRGVEDLIPPESEKFEKVVETFKNVVNKAGFREVILPIFEEAGLFSRSVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  + +   P         +  H    +     ++ +   FR E RP+ G
Sbjct: 61  VQKEMYVFEDKGGRVIALRPEGTASAVRAYIEHGVFAKEPFTKWFYVGPMFRFE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL-- 206
             R R+F       F L+  G+     K+    L+         I    E   IG +   
Sbjct: 120 --RKRQFFQAGCEVFGLSSPGADAEVIKVACDILKALK------IDYSLELNSIGCEKCR 171

Query: 207 SHEFIVLADTGE--TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           S     L +  E   +  C      F           + +  +IV +         +  +
Sbjct: 172 SEYKRALIEFLESRKEKLCEDCIKRFERNPLRVLDCKVETCQNIVAEAPKITDFLCNECS 231

Query: 265 EKL---------FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           E            D          RG++      F  K S  + A      G  +   + 
Sbjct: 232 EHFEKLKEYLALLDVKFVENPFLVRGLDYYTKTVFEFK-SKKLGAQSTILAGGRYDKLVS 290

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G      +   +      + ++    +   +  +  +    +       K+   L + 
Sbjct: 291 QLGGPETPALGFAMGV---DRAMLLLPEIEEKREGIFLVTRG-EKAYKEGLKLLRLLREK 346

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEV 434
           G  V  D       +Q   AD +     VI+G   V +     K   TG +E + ++E +
Sbjct: 347 GFRVEIDHRQGSFKAQMKAADRVKAKYVVIIGESEVEEGFFSFKELETGKQERVENIEAL 406

Query: 435 INYA 438
           I   
Sbjct: 407 IARF 410


>gi|294892656|ref|XP_002774168.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239879385|gb|EER05984.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 9/129 (6%)

Query: 319 IGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            G  R++  ++E +   +          +  P  VAP K+S++ I ++    + A  KI 
Sbjct: 521 FGVGRIIYTILEHTFRSREMEDQELRCYLSLPPVVAPTKVSVLPISSNPTQFKPAMHKIT 580

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G     DD G+ IG ++A  D +G P  + +  + ++D  V ++ R +  +  +
Sbjct: 581 DALKEHGISYKVDDSGQAIGKRYARTDEIGIPFGITIDFQSLNDDTVTLRERDSMSQIRL 640

Query: 430 SLEEVINYA 438
            + +V +  
Sbjct: 641 PIADVADLV 649



 Score = 45.3 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +PF   QI L FR+E+ PR G++R REF M +   F          ++K+    L +F
Sbjct: 259 MPFAAAQIGLGFRNEIAPRAGLLRVREFPMAEIEHFVHPDHKDHPDFHKVADLKLPLF 316



 Score = 43.8 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ A+ R    N    +E+    L    +   SG  + +   M++
Sbjct: 88  AGLYDFGPPGCALKANLEALWRRHFINHDNMLEIQCTCLTPEVVLKTSGHVEKFTDLMVK 147

Query: 96  LADRNDKAMIYGPTHEE 112
                D+        EE
Sbjct: 148 NEKNPDEYYRADKLLEE 164


>gi|169825637|ref|YP_001695795.1| seryl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|238688179|sp|B1HS47|SYS_LYSSC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|168990125|gb|ACA37665.1| Seryl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  EM  P + + +    +G+   + +++ +LA+ 
Sbjct: 165 FYRGLGARLERALMTFMMDLHAEEHGYEEMLPPVIVNRESLTGTGQLPKFEEDVFKLAET 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T+ +R  I +   LP  F      FR E     R   G++R  +F
Sbjct: 225 D---YFMIPTAEVPVTNFYRDEILTAEALPQGFAAYSACFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
              +   F + PE S      +     ++   LGL    ++  +  +G         E  
Sbjct: 282 NKVELVRF-VKPEESYEQLELLTGHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEVW 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +F DF     N  F
Sbjct: 341 IPAQNMYREISSCSNFEDFQARRANIRF 368


>gi|158520686|ref|YP_001528556.1| histidyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|229558655|sp|A8ZUR6|SYH_DESOH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|158509512|gb|ABW66479.1| histidyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 423

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 133/441 (30%), Gaps = 48/441 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GK 91
           Q  KG    LP        +  +        G  E+  P ++  +L+  S   D+    K
Sbjct: 3   QLIKGFKDILPGEADRWRRIETLAAVTFGAFGFSEIRPPVMERTELFKRSIGEDTDIVEK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVM 150
           EM    DR    +   P     +   +  H K Y + P    Y I   FR E RP+ G  
Sbjct: 63  EMYTFEDRGGDLVTLRPEATASVVRAYIQH-KLYADTPVAKLYTIGPMFRRE-RPQKG-- 118

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI-- 202
           R R+F   +A +F +           M +    +F  LGLK   +   S       P   
Sbjct: 119 RYRQFHQINAEAFGVAAPYMDAQLIFMLMI---LFSALGLKDTRVHINSLGCAQCRPAFK 175

Query: 203 ----------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                       DL  +     D    +V   K      + +E     D +         
Sbjct: 176 QRLLSFLEGRKADLCEDCTRRIDRNPLRVLDCKVDRCRHVSAEAPQITDFLCPGCAAHFD 235

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGK 308
                 T       +   L        R          G + ++     +        G 
Sbjct: 236 EVTGLLTDLGVGFDIDKRLVRGLDYYTRTTFEVQTDRLGAQSAIAGGGRYDDLVKLLGGP 295

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           D       + +G  R+V  V               VA  ++ +  +    +  R      
Sbjct: 296 DQPAV--GFAVGLERLVELVAMEETVSD-------VAHLRLFIAALG---ERARRRAFGW 343

Query: 369 YARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
              L++ G DV    ++ G +  SQ   AD       +IVG   +    + +++  T  +
Sbjct: 344 MCELNRRGFDVEMSLEERGLK--SQMKTADKWNASHVLIVGDAEMETGSLILRNMKTKAQ 401

Query: 427 EDMSLEEVINYASHRFSNNRP 447
           +++ L +V         N + 
Sbjct: 402 QEIPLGDVPGALITMMDNRQE 422


>gi|148825348|ref|YP_001290101.1| histidyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166227971|sp|A5UAB7|SYH_HAEIE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|148715508|gb|ABQ97718.1| histidyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 423

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 136/427 (31%), Gaps = 47/427 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P            H   Y N     + I   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIEHGWIYNNE-QRLWYIGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F +           + +   R++  LG+    +  +   IG   +      A  G  + 
Sbjct: 131 VFGIANPKIDAE---LIMLTYRLWKALGIDQY-VTLQLNSIGSLEARANYRSALVGFLEN 186

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSAR 280
                  +            + + N  +++           + +E           + A 
Sbjct: 187 HQDLMSDEEKDRLVKNPLRILDTKNPELQKVLDNAPKLLDYLDDESREHFEQLCSLLDAV 246

Query: 281 GIEVGHIFYF--GTKY---------SLPMSAT--------FKG--ADGKDHYVQMGSYGI 319
           GI+         G  Y         +  + A         + G       H      + +
Sbjct: 247 GIQYEINPKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAM 306

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVG 376
           G  R+V  V E +        P   A   + +  +   +       +  EK+ + L    
Sbjct: 307 GLERLVLLVQEVN-----PNVPVKSA---VDIYVVYQGEGTTLAAFELAEKVRSELP--H 356

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVI 435
            +      G     QF  AD  G  L +++G   V + +V +KH   G  ++ + L  +I
Sbjct: 357 LNTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGADQQTLDLVNII 416

Query: 436 NYASHRF 442
           +Y   +F
Sbjct: 417 DYIQTQF 423


>gi|120437853|ref|YP_863539.1| glycyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|117580003|emb|CAL68472.1| glycyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 515

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 107/324 (33%), Gaps = 68/324 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +PF   QI   FR+E+  R  + R REF   +   F    E     Y K     L     
Sbjct: 238 IPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVRPGEEL-EWYEKWKEIRLNWHRS 296

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           LGL     R           H+   LA                             +   
Sbjct: 297 LGLGEENYRL----------HDHEKLA-------------------------HYANAAAD 321

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           I   +   +     +H+   FD                H  + G K        F   + 
Sbjct: 322 IEFDFPFGFKELEGIHSRTDFDLK-------------AHEEHSGKK------LRFYDPEL 362

Query: 308 KDHY-VQMGSYGIGAMRVVAAVI------ESSHDGKG---IIWPDSVAPFKISLINIKAH 357
           K++Y   +    IG  R+  +V+      E   DG     +  P  +AP K +++ +   
Sbjct: 363 KENYVPYVIETSIGLDRMFLSVLSSSLKEEDLGDGNTRTVLKLPAVLAPTKAAILPLVKK 422

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D    +  +KI   L K    V +D+    IG ++   D  G PL + V    + D+ V 
Sbjct: 423 D-GLPELAQKIVDEL-KWDFKVQYDEKDA-IGRRYRRQDAAGTPLCITVDHDSLEDNAVT 479

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R +  ++ +S+EE+       
Sbjct: 480 VRFRDSMEQKRVSIEELDTLIRKE 503


>gi|107103322|ref|ZP_01367240.1| hypothetical protein PaerPA_01004391 [Pseudomonas aeruginosa PACS2]
          Length = 419

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 131/436 (30%), Gaps = 56/436 (12%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +        +  G  E+ +P L+  +L+        D   KEM    DRN
Sbjct: 5   LPEQTPAWRYLERTFAGLLDGYGYSEIRLPILEFTELFARGIGEGTDVVDKEMYTFLDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P            H  S        +     FR E +P+ G  R R+F     
Sbjct: 65  GESLTMRPEGTAGCVRAVLEHGLSGGGQVQKLWYTGPMFRYE-KPQKG--RYRQFHQIGV 121

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F+L           + +   R++ +LG+      A +  +    S E           
Sbjct: 122 EVFNLPGPDIDAE---LIILTWRLWQKLGMAD----AVTLQLNTLGSSEARARYREALVA 174

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
               +              + +  L+S VE   A       +H+    +S+   + + AR
Sbjct: 175 YLQERFEQLDEDSQRRMTTNPLRILDSKVESTQALLVGAPTLHDYLDEESIAHFEGLKAR 234

Query: 281 GIEVGHIFYFGTKYSLPMSA-------TFKGADGKD------------------HYVQMG 315
              VG  +    K    +               G                          
Sbjct: 235 LDAVGLRYEINQKLVRGLDYYCRTAFEWVTDKLGAQGTVCGGGRYDGLVSQFGGKPTPGV 294

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQVCRDACEKIYARLSK 374
            + +G  R+V  ++E+       + P  +  P  + +       +    A   +  +L  
Sbjct: 295 GFAMGVERLVL-LLETLG-----VIPAELNRPADLYVCAFG---EPAELAALTLAEQLRS 345

Query: 375 V--GCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRED 428
              G  +         G  +  F  AD  G    +I+G   V++  V  K  R  G ++ 
Sbjct: 346 AIPGIRLLV---NAGAGSFKSQFKKADKSGARFALILGEDEVANRVVGFKPLRDEGEQQS 402

Query: 429 MSLEEVINYASHRFSN 444
           ++ + +  + +   + 
Sbjct: 403 IAWDALPEHLAACLAQ 418


>gi|321441281|gb|ADW85055.1| glu- + pro-tRNA synthetase [Apha aequalis]
          Length = 134

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +   D  +  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSKIFEIVYDDPDTHEKAYVFQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++          +        C+ +   L   G     D       
Sbjct: 74  GLVLPPRVADIQAIVVPCGITASSTAEERKGLIDSCKALVDDLVAAGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|294670885|ref|ZP_06735741.1| hypothetical protein NEIELOOT_02589 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307372|gb|EFE48615.1| hypothetical protein NEIELOOT_02589 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 430

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 136/440 (30%), Gaps = 52/440 (11%)

Query: 34  QHSKGIYSWLPLGQK-------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LPL QK              ++R+   R G  ++  P L+   L+V S   
Sbjct: 6   QAVKGMNDLLPLEQKDFKLTSAFWQAFEDVVRKWTRRFGYSQIRTPILEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             D  GKEM   +D ND  ++   P            H   Y N P   + +   FR E 
Sbjct: 66  ETDVVGKEMYTFSDSNDTLSLSLRPEGTASCLRAVVEHNLLY-NSPQKLWYMGPMFRRE- 123

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP+ G  R R+F      +              M     R    LG+    +  E   +G
Sbjct: 124 RPQKG--RYRQFHQVGVEALGFDGPDVDAEMIAMCADLWR---ELGISDF-LTLEINNLG 177

Query: 204 GDLSHEFI----------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                               A   E      K      + S+N D   + +    +  + 
Sbjct: 178 NKEERAAHRSALVAYLQQHEAILDEDSKRRLKTNPLRVLDSKNPDLQAVCNQAPRLLDYL 237

Query: 254 APYAATSDVHNEKLFDSLPE---NKRVSARGIEV-------GHIFYFGTKYSLPMSATFK 303
              +       ++L D L           RG++              G + ++     + 
Sbjct: 238 GEESLAHYNGFKRLLDVLGIAYVENPRLVRGLDYYNLTVFEWTTDKLGAQATVCGGGRYN 297

Query: 304 GADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G  G+          + +G  R+   ++     G         AP  I ++      +  
Sbjct: 298 GLIGELGGKDAPAIGFAMGIERL---LLLVHEYG---RLKTDAAP-DIYVM----QQEEG 346

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +A     +RL   G +V      + + +Q   AD  G    +IVG     +    +K  
Sbjct: 347 LEAAINYASRLRAAGFNVLQHCGNQSLKNQMKKADASGARFALIVGEDEAENGTATVKDL 406

Query: 422 LTG-IREDMSLEEVINYASH 440
                ++ ++  E+    + 
Sbjct: 407 QGQFGQQTIASAELTTLLTQ 426


>gi|260591222|ref|ZP_05856680.1| glycine--tRNA ligase [Prevotella veroralis F0319]
 gi|260537087|gb|EEX19704.1| glycine--tRNA ligase [Prevotella veroralis F0319]
          Length = 515

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 71/509 (13%), Positives = 152/509 (29%), Gaps = 97/509 (19%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV- 71
           +I SH      G +   S        +Y +   G +  +N+     +      +  + + 
Sbjct: 9   KIVSHCK--EYGFVFPSSDIYDGLAAVYDYGQNGVELKNNIKQYWWQSMVLLHSNIVGID 66

Query: 72  -PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                   +W  SG  D++      L D  D    Y   +  +   I +   K  + +  
Sbjct: 67  ASIFMHPTVWKASGHVDAFND---PLIDNRDSKKRYRADN-LIEDQIAKYEEKIDKEVAK 122

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMK-----------------DAYSFDLTPEGSKH- 172
              +    F DE++ R    R  E   K                 +A    +  EG    
Sbjct: 123 AAKKFGADF-DEVKFRETNPRVLEHQKKRDELHARYTEAMQGPDLEALKQIILDEGIVDP 181

Query: 173 -----------SYNKMF--------VSYLRIFHR------LGLKSIPMRAESGP------ 201
                       +N MF         +  +I+ R      + +  + ++           
Sbjct: 182 ISGTKNWTDVRQFNLMFSTEMGASADATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGI 241

Query: 202 --IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ-------- 251
             IG    +E +        + F   +   F  P     + +    + +           
Sbjct: 242 CQIGKAFRNEIVARQFVFRMREFEQMEMQFFCQPGTEMKWFEYWKKHRLAWHEALGMGDD 301

Query: 252 ---WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGAD 306
              +          +     +           GI     F      K+S      F    
Sbjct: 302 NYRFHDHEKLAHYANAATDIEFRMPFGFKEVEGIHSRTNFDLSQHEKFSGRQIKYFDPER 361

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAH 357
            +++        IG  R+  +V+  S+  + +           P+ +AP K +++ +   
Sbjct: 362 NENYVPYDVETSIGVDRMFLSVMCHSYTEEPLENGSSRIVLKLPEPLAPVKCAVLPLVNK 421

Query: 358 DQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           D    +  ++I  +L        +       + IG ++   D +G P  V V    ++D+
Sbjct: 422 D-GLPEKAQEIVNQLKFHFNTHMEAK-----DSIGKRYRRQDAIGTPFCVTVDGDTLNDN 475

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V +++R +  +E + +E++      R S
Sbjct: 476 TVTLRYRDSMKQERVPVEKLREIIEDRVS 504


>gi|254518949|ref|ZP_05131005.1| histidyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226912698|gb|EEH97899.1| histidyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 432

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 150/438 (34%), Gaps = 58/438 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD--LWVESGRYDSYGKEML 94
            G    LP+ Q+  +++   I +     G + +  P ++ A+  L   +G  +   K++ 
Sbjct: 12  PGFMELLPIEQRKFNDIVEKITKVYEENGCLPIDTPIIEKAEILLAKNAGETE---KQVY 68

Query: 95  RL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
                 N+ A+ +  T   V    + S   +  N P   YQI   +R E R + G  R R
Sbjct: 69  AFQKGSNNLALRFDLT---VPFARYTSQYFNDLNFPLKRYQIGKVYRGE-RNQRG--RYR 122

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--------GGD 205
           EF   D           K+    +     + F  +GLK    +  +  I          +
Sbjct: 123 EFYQCDVDIIGKDKLSIKND-ALVISLASKAFKSIGLKDYKFQISNRKILSALLSSLNIE 181

Query: 206 LSHEFIVLADT------------------GETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            S + ++L D                    E+    +K         +  +  +++++  
Sbjct: 182 SSIDVMILIDKYDKIGEQTFKEELDKLVNKESAKIINKVININGSKDKVLEELELLNIQD 241

Query: 248 IVEQWTAPYAATSDVHNEKLF--DSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFK 303
                            E L   DS         RG++   G +F      +    +   
Sbjct: 242 EKFTLGLNELKEVTTTLEVLGVYDSEYIINLKIIRGLDYYTGTVFETLLINNEEYGSICS 301

Query: 304 G-------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           G        +  ++ +      IG  R+   + E          P  V   +  +I I  
Sbjct: 302 GGRYDNLAENYTNNILPGVGISIGLTRLFFVLKEIGFVESY-KLPSKV---EYLIIPIGD 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                   C ++Y +L++ G  V      +++  +   A+ L  P  +++G +  ++  +
Sbjct: 358 ----TLKYCGEVYKKLTESGKAVEMYFEDDKLKKKLNYANKLEIPYVILLGEEEEANKSI 413

Query: 417 EIKHRLTGIREDMSLEEV 434
            IK+ +TG +E +  E++
Sbjct: 414 NIKNMITGKQETLKFEDI 431


>gi|52548690|gb|AAU82539.1| glycyl-tRNA synthetase [uncultured archaeon GZfos18C8]
          Length = 593

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDG--------KGIIWPDSVAPFKISLINIKAHD 358
           G+     +     G  R++ A +E S             +  P  VAP +++++ +   +
Sbjct: 440 GERVIPHVIEPSFGIDRIIYAALEHSFSEEPVEGVTRNVLHLPAEVAPVQVAMLPLLTRE 499

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           ++  +    I   L + G  V +DD G  IG ++   D +G P  V +  + + D  V I
Sbjct: 500 ELI-EPALAIVKTLRENGVFVSYDDAG-TIGRRYRRNDEIGTPFSVTIDYETLDDDTVTI 557

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +  +  + + E+         
Sbjct: 558 RDRDSMAQIRVPVGELAETIRAMIR 582



 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 66/213 (30%), Gaps = 64/213 (30%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML- 94
            G Y + PLG      +  I R+      G  E+  PT+  A ++  SG    +   M+ 
Sbjct: 37  AGFYDYGPLGAMLKRRIEDIWRKMYVIEEGFYEIETPTIGIAAIFDASGHTRGFSDPMVV 96

Query: 95  ------------------------------RLADRNDKAM-------------------- 104
                                         RL D +                        
Sbjct: 97  CSGCDHAFRADHLIEGIVETPDALPASEIKRLIDEHGIECPQCGGVGTFGDVSSFNLMFK 156

Query: 105 -----------IYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRS 152
                         P   + M   F    + YR  LPF   QI   +R+E+ PR GV+R 
Sbjct: 157 TTIGPGAERVGYLRPETAQGMFVDFEHLFRFYREKLPFGVTQIGKAYRNEISPRQGVIRL 216

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           REF   +A  F    + +   ++ +  + LR +
Sbjct: 217 REFTQAEAEIFINPTDKNHPRFSMIEDTVLRYY 249


>gi|326390337|ref|ZP_08211896.1| seryl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993614|gb|EGD52047.1| seryl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 423

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P +        +G+   + ++  ++   
Sbjct: 164 FYKGLGARLERALINFMLDLHIEKHGYTEVFPPFMVHRRSMFGTGQLPKFEEDAFKV--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 221 YGTDYFLIPTAEVPVTNMYRDTIIDGDKLPIYHCAYSACFRQEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   P+ S     KM      +   LGL    +   +G +G   S ++ + 
Sbjct: 281 NKVELVKF-TEPDKSYEELEKMTRDAEEVLQALGLPYRVVAICTGDLGFTASKKYDIE 337


>gi|229525406|ref|ZP_04414811.1| histidyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229338987|gb|EEO04004.1| histidyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
          Length = 422

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 150/439 (34%), Gaps = 54/439 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  +++   +  G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGV 149
           EM    DRN  ++   P   E      RS I++          + +   FR E RP+ G 
Sbjct: 66  EMHTFEDRNGDSLTLRP---EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F       F L           M     R++  LG+ +  +R E   IG   +  
Sbjct: 121 -RYRQFHQCGVEVFGLDGPDVDAELIMM---TARLWRELGI-AQHVRLELNSIGSLEARA 175

Query: 210 FIVLADTGETQVFCSKDFMDF----------PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               A     + + +    D            + S+N D   I+     +  +    +  
Sbjct: 176 NYRTALIDYLEQYQNVLDEDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQ 235

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVG--HIFYFGTKYSLPMSATFKGA--------- 305
                 +L D+        +   RG++     +F + T+ SL    T  G          
Sbjct: 236 HFAGLCELLDAAGIEYTVNQRLVRGLDYYNRTVFEWITE-SLGSQGTVCGGGRYDGLVEQ 294

Query: 306 -DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK        + +G  R+V  ++E+  +             +   + +    +    A
Sbjct: 295 LGGKPTPAV--GFAMGLERLVL-MMETLGNTD---------VRRSVDVYMVTAGEGTMMA 342

Query: 365 CEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K+  +L +   G  V     G     QF  AD +G  + +++G   V+   V +K   
Sbjct: 343 GMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIALVLGEDEVAAQTVVVKDLA 402

Query: 423 TGIREDMSLEEVINYASHR 441
            G +  ++  EV    +H 
Sbjct: 403 GGEQNTVAQAEVAKLLAHL 421


>gi|227878024|ref|ZP_03996017.1| seryl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256850727|ref|ZP_05556150.1| seryl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|227862378|gb|EEJ69904.1| seryl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256712440|gb|EEU27438.1| seryl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
          Length = 435

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKEGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|134098086|ref|YP_001103747.1| glycyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007455|ref|ZP_06565428.1| glycyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910709|emb|CAM00822.1| glycyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 461

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 122/358 (34%), Gaps = 47/358 (13%)

Query: 92  EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            M+       +        +   T + +  +       + R  PF   QI   FR+E+ P
Sbjct: 141 NMMLKTFLGPVESEEGLHYLRPETAQGIFVNFANVMTTARRKPPFGIGQIGKSFRNEITP 200

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              + R+REF   +   F    E    H Y       +  +  LG++   +R    P   
Sbjct: 201 GNFIFRTREFEQMEMEYFVEPGEDESWHQYW--IDQRMSWYTDLGIEPENLRLYEHP-KD 257

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            LSH      D      F   ++ +    +  TDFD     N      +    A+   + 
Sbjct: 258 KLSHYSKRTVDIEYRFGFGGGEWGELEGIANRTDFDLTTHSNHSGVDLSYFDQASKSRYR 317

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             + +      R                    PM A    A  +D      + G    R 
Sbjct: 318 PYVIEPAAGVGR--------------------PMMAFLIDAFHEDQAP--NAKGGVDERT 355

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           V            +     +AP K++++ +  + +        +   L K   ++ +DD 
Sbjct: 356 V------------LKLDRRLAPVKVAVLPLSRNAE-LSPKARDLATGLRKHW-NIEFDDA 401

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G  IG ++   D +G P  V V    ++D  V ++ R T  +E ++++++ +Y + R 
Sbjct: 402 GA-IGRRYRRHDEIGTPFCVTVDFDSLTDHAVTVRERDTMAQERVAMDKLEDYLAVRL 458


>gi|256844211|ref|ZP_05549698.1| seryl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|262047844|ref|ZP_06020793.1| seryl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|312976669|ref|ZP_07788418.1| serine--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|256614116|gb|EEU19318.1| seryl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|260571837|gb|EEX28409.1| seryl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|310895997|gb|EFQ45062.1| serine--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 435

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKEGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|187736261|ref|YP_001878373.1| glycyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426313|gb|ACD05592.1| glycyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 525

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 75/518 (14%), Positives = 153/518 (29%), Gaps = 109/518 (21%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQS 76
           L  R G I Q +       G + + P+G +   N+      +  Q R   + M    L  
Sbjct: 18  LCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKNVQEREDVVGMDGSILTH 77

Query: 77  ADLWVESGRYDSYGKEM-----------------------LRLA--------DRNDKAMI 105
             + V SG    +   M                                   +   K  +
Sbjct: 78  NSVLVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYTGAAKKDGSWNIEKKYSV 137

Query: 106 YGPTHEEV---------MTDIFRSHIKSYRNLPFT---FYQIQLKFRDELRPRFGVMRSR 153
              + ++                    SY+++         +             +  +R
Sbjct: 138 LVESEKQADKARKTAAQYYAQLAGKDASYKDMELKGECMETVTDSTMYNPANGSLLTEAR 197

Query: 154 EFLMKDAYSFDLTPEGSK---------HSYNKMFVSYLRIFH--RLGLKSIPMRAESGPI 202
           EF +    +   T + +           +   +F  Y  I    R+ L     +     I
Sbjct: 198 EFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDSSRVKLPFGIAQ-----I 252

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           G    +E      T  ++ F   +   F  P +     D    + +              
Sbjct: 253 GKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCFY---DEVGVPRE 309

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMS-------ATFKGA 305
           H   L     E    S +  ++ + F FG          T Y L            +   
Sbjct: 310 HIHILDVPDGERAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGSGRPLEYFDE 369

Query: 306 DGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISL 351
           + ++ +   +     G  R + A+I  ++D + ++             +   +AP K ++
Sbjct: 370 ETREKFIPHVVEPSAGCDRTILAIICEAYDEEELVDDKGKKDVRTVLRFVPRMAPIKAAI 429

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV----- 406
             +   +        +I   L      VF+D+ G  +G ++   D +G P  + V     
Sbjct: 430 FPLLKKNGEQVRIAREIEKTLQ-PWMSVFYDETGA-VGRRYRRQDEVGTPFCITVDFETL 487

Query: 407 GSKFVS-DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G    S    V I+HR +  +E +++E+++++   R  
Sbjct: 488 GENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR 525


>gi|146276505|ref|YP_001166664.1| seryl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554746|gb|ABP69359.1| seryl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 430

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 77/253 (30%), Gaps = 24/253 (9%)

Query: 14  NPRDA-EIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGA 66
            P++  EIA     ++ GM    +    G    +  G        +   + +      G 
Sbjct: 137 TPKEHFEIAG----VKPGMDFATAAKLSGSRFVMLTGAVIRVHRALAQFMLDTHVAEHGL 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E   P L   +    +G+   + ++  +            PT E  +T+     I    
Sbjct: 193 TETWTPVLVKDEAMFGTGQLPKFSEDSYQTT----NGWWLIPTAEVTLTNTVAGEILEEA 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +  S   TPE S+  + +M     
Sbjct: 249 QLPIRMTAHTQCFRSEAGSAGKDTAGMLRQHQFEKVEMVSI-TTPETSRAEHERMTRCAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +LGL    +   +G +G   +     E  +       ++       DF     N  
Sbjct: 308 AILEKLGLPYRTIVLCTGDMGFGATRTHDLEVWLPGQNTYREISSVSVCGDFQARRMNAR 367

Query: 239 FDDIISLNSIVEQ 251
           F            
Sbjct: 368 FRPAGGGKPEFVH 380


>gi|218262762|ref|ZP_03477120.1| hypothetical protein PRABACTJOHN_02799 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223164|gb|EEC95814.1| hypothetical protein PRABACTJOHN_02799 [Parabacteroides johnsonii
           DSM 18315]
          Length = 424

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 19/255 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGQGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
               +  +L L    +R   G +          E    A     +V    +F ++     
Sbjct: 308 HVEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWLEVSSVSNFDNYQANRL 367

Query: 236 NTDFDDIISLNSIVE 250
              + D      +  
Sbjct: 368 KCRYRDENKKTQLCH 382


>gi|295693517|ref|YP_003602127.1| seryl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295031623|emb|CBL51102.1| Seryl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 435

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKEGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|194476950|ref|YP_002049129.1| histidyl-tRNA synthetase [Paulinella chromatophora]
 gi|171191957|gb|ACB42919.1| histidyl-tRNA synthetase [Paulinella chromatophora]
          Length = 422

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 141/434 (32%), Gaps = 64/434 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP        +    R    R+G  E+  P L+  +L+        D   KEM  
Sbjct: 9   GMVDLLPEHTPLWQFIEETARTHFRRSGVNEIRTPLLEPTELFARGIGESTDVVNKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS--HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             DR D++    P   E    I R+          P  F+     FR E RP+ G  R R
Sbjct: 69  FFDRGDRSCTLRP---EGTASIVRAALQHNLLAQGPQRFWYSGPMFRYE-RPQAG--RQR 122

Query: 154 EFLM--KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE-- 209
           +F     + + +   P     + +  +   +     LG+K + +   +    G +S    
Sbjct: 123 QFHQIGLELHGYS-DPRSDVEAISIAWDLLM----DLGVKRLALELNT---LGSISDRIL 174

Query: 210 FIVLADTGETQVFCSKDFM-------------DFPIPSENTDFDDIISLNSIVEQWTAPY 256
           +    +T  +  F   D               D  IPS   +      L S      +  
Sbjct: 175 YRQKLETWLSDHFNELDEDSRARVSSNPLRILDSKIPSTK-ELLKKAPLLSNELSAESSE 233

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADG 307
              +            +      RG++      F       G + ++     + G     
Sbjct: 234 RFAAVREGLANLGIPFKINPYLVRGLDYYSHTAFEIISDQLGAQSTVCGGGRYDGLVEQL 293

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
             H      + +G  R+V  +++ +        P  +      +IN     +V       
Sbjct: 294 GGHNTPAIGWALGVERLVLLIMQGN-------IPIKIPSPDFYIIN---KGKVAEAIALT 343

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVAD----LLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +  +L   G  V  D        QF  AD    L      +I+G + V+ +++ IK+  T
Sbjct: 344 LARQLRNSGMIVELDCSKSAFSKQFKRADRSNALQ----AIILGEEEVARNQIRIKNLRT 399

Query: 424 GIR-EDMSLEEVIN 436
            I    +++E+ ++
Sbjct: 400 NISNRSLNIEDFLD 413


>gi|88860149|ref|ZP_01134788.1| seryl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88818143|gb|EAR27959.1| seryl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 434

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 83/246 (33%), Gaps = 24/246 (9%)

Query: 17  DAEIASHKLMLRT---GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAI 67
           D E+  H  +  +   G+  +      G    +  GQ A     +   + +   ++ G  
Sbjct: 133 DFEVKDHVDLGESLNKGLDFEAGVKLSGARFTVMRGQIARMHRALVQFMLDTHSDKNGYT 192

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTDIFRSH 121
           EM VP L + D    +G+   + +++                    PT E  +T+  R  
Sbjct: 193 EMYVPYLVNKDSLFGTGQLPKFAEDLFHTKGLVNDDGVEQDGFSLIPTAEVPLTNCARDE 252

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I    +LP         FR E     R   G++R  +F   +     + PE S  +  ++
Sbjct: 253 IYDEADLPIKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQL-VKPEDSMAALEEL 311

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                +I   L L    +   +G +G   +     E  + A     ++    + +DF   
Sbjct: 312 TGHAEQILQALELPYRKVILCTGDMGFGSAKTYDLEVWLPAQNTYREISSCSNMVDFQAR 371

Query: 234 SENTDF 239
                F
Sbjct: 372 RMQARF 377


>gi|212223791|ref|YP_002307027.1| glycyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212008748|gb|ACJ16130.1| glycyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 567

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 6/140 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R    ++E+S     D   +     +AP +++++ + A  +  +
Sbjct: 427 GEKIVPHVLEPSFGIDRPFYLLLENSLVIEDDRTYLRLKKDMAPIEVAVLPLVAK-EPLK 485

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +++ +L K G    +D+  + IG ++   D +G P  V + ++   D  V I+ R 
Sbjct: 486 SIAYEVFRKLQKAGFIAVYDE-KDTIGRRYIRYDEIGTPYCVTIDNQTPEDGTVTIRDRD 544

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +  + +EE+        
Sbjct: 545 TREQVRVKIEELPEKLRELI 564



 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 76/231 (32%), Gaps = 68/231 (29%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  ++G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 9   QDLMRRRGFAWGSFEIYGGTRGFYDYGPLGATIKRKIEQKIREAFQREGFFELETPDITP 68

Query: 77  ADLWVESG-------------------RYDSYGKE------------------------- 92
             +++ SG                   R D   +E                         
Sbjct: 69  EKVFIASGHVDKFVDPLVECRKCGARFRADHLVEEALGIDTEGMSADHLTRLIREHDIKC 128

Query: 93  ---------------MLRLA--DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQ 134
                          M         D+     P T + +  +  R +  +   LPF  +Q
Sbjct: 129 PECGGELSDVWYFNLMFETKIGPYGDQKGYLRPETAQGIFVNFRRLNAFARNKLPFGVFQ 188

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           I   +R+E+ PR G++R REF   +A  F    E     ++++    LR++
Sbjct: 189 IGKAYRNEISPRQGMLRLREFTQAEAEIFFNPKETEHPHFDEVKDEVLRLY 239


>gi|254252258|ref|ZP_04945576.1| Histidyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124894867|gb|EAY68747.1| Histidyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 446

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 134/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAALWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP  G  R R
Sbjct: 75  SFTDALNGEHLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRLE-RPHRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +           A  +    + L D    
Sbjct: 182 AHRVELIKYLEQHVDVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDQSRA 241

Query: 274 NKRVSARGIEVGHI-FYFGTK-------YSLPMSATFKGADGKD---------------- 309
           +     R +   ++ F    +       Y+L +        G                  
Sbjct: 242 HFEGLQRLLLANNVPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R    ++E   +         +AP +  + +  +    +  R+  
Sbjct: 302 GGKPTAACGWAMGIER----ILELLKEED-------LAPEQEGVDVYVVHQG-EAAREQA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
                RL   G DV +    D       SQ   AD  G    VI G + V++    +K  
Sbjct: 350 FIAAERLRDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTAGVKAL 409

Query: 421 RLTGI------REDMSLEEVINYASH 440
           R TG       ++ + +E +  +  +
Sbjct: 410 RGTGDEGEKNVQQTVPVESLTEFLIN 435


>gi|325982390|ref|YP_004294792.1| seryl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325531909|gb|ADZ26630.1| seryl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 438

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 78/233 (33%), Gaps = 20/233 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E  VP L + +    +G+   + +++
Sbjct: 158 SGARFSLMKGGLARLHRALAQFMLDTHTLEHGYTETYVPYLVNRNSLRGTGQLPKFAQDL 217

Query: 94  LRLADRNDK--------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL-- 143
             +   + +             PT E  +T++ R  I   ++LP  +      FR E   
Sbjct: 218 FAITAGDAESSSAGNISEYHLIPTAEVPITNMVRDEIVPLQSLPLKYVSHTPCFRSEAGS 277

Query: 144 --RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
             R   G++R  +F   +     + P+ S  +  ++     +I  +L L    M   +G 
Sbjct: 278 YGRDTRGLIRQHQFDKVELVHI-VHPDQSYDALEQLVGHAEKILQKLMLPYRVMALCTGD 336

Query: 202 IGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +G   +     E  + A     ++    +   F        F +      ++ 
Sbjct: 337 MGFSAAKTYDIEVWLPAQNTYREISSCSNCEAFQARRMQARFRNENGKPMLLH 389


>gi|322832176|ref|YP_004212203.1| seryl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321167377|gb|ADW73076.1| seryl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 430

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 16/209 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     ++  + +    + G +E  VP L + +    +G+   +G+++
Sbjct: 158 TGARFVVMKGQIARMHRALSQFMLDLHTEQHGYLETYVPYLVNQETLYGTGQLPKFGEDL 217

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                 +++A        PT E  +T++ R  I    +LP         FR E     R 
Sbjct: 218 FHTKPLDEEAGSSNYALIPTAEVPLTNLTRDEILEEESLPLKMTAHTPCFRSEAGSYGRD 277

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-- 203
             G++R  +F   +     + PE S  +  ++     ++   L L    +   +G +G  
Sbjct: 278 TRGLIRMHQFDKVEMVQI-VRPEDSMDALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFG 336

Query: 204 --GDLSHEFIVLADTGETQVFCSKDFMDF 230
                  E  + A     ++    +  DF
Sbjct: 337 SCKTYDLEVWLPAQDTYREISSCSNMGDF 365


>gi|291333903|gb|ADD93583.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 206

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 302 FKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSH------DGKG---IIWPDSVAPFKISL 351
            +  D  +     +     G  R V A++  ++      DGK    +     ++P K ++
Sbjct: 50  IQDKDSNEWIVPFVIEPSAGVERGVLAILNEAYKIEKLEDGKERIVLALKPHLSPIKAAV 109

Query: 352 INIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I +K +++      + +   L  +G   V  ++ G  IG  +   D +G P+ + +    
Sbjct: 110 IPLKKNNEDLVSLAKNVKDELQSLGKGRVLLENTGN-IGKSYRKHDEVGTPMCITIDFDS 168

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + ++ V I+ R +  ++ + ++E+  Y S+  S N
Sbjct: 169 LDNNTVTIRDRDSMEQKTIQIQELTTYFSNFLSKN 203


>gi|299134937|ref|ZP_07028128.1| seryl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298589914|gb|EFI50118.1| seryl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 486

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 106/323 (32%), Gaps = 68/323 (21%)

Query: 44  PLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRND 101
           P        V  + RE  +    A   S+  L +  D    S R  +   EM  + D   
Sbjct: 224 PGSFNIRKLVEILEREAIDHEIDAAPFSLAKLGAIFDFNNASERAKTLLAEM--VEDSRV 281

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           +     PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F  
Sbjct: 282 RRW-LIPTAEVPLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTK 340

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +  S   TPE SK+ + +M      +  RLGL    M   +G +G      + +     
Sbjct: 341 VELVSI-TTPEESKNEHERMLSCAEEVLKRLGLHYRVMTLCTGDMGFASQKTYDIE---- 395

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                     +  P   EN  + +I S +                               
Sbjct: 396 ----------VWMPGQGENGMYREISSCSV------------------------------ 415

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
                        G   +  M A ++G+D K  +V  +   G    R + AV+E+     
Sbjct: 416 ------------CGDFQARRMDARYRGSDNKPRFVHTLNGSGTAVGRALIAVMETYQQED 463

Query: 337 G-IIWPDSVAPFKISLINIKAHD 358
           G I  PD + P+   L  I   +
Sbjct: 464 GSIAVPDVLQPYMGGLKVIAKDN 486


>gi|11596253|gb|AAG38542.1|AF309805_7 glycyl tRNA synthetase [Pneumocystis carinii]
          Length = 615

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 120/364 (32%), Gaps = 66/364 (18%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +PF    +   FR+E+ PR G++R REF M +   + + P    H              R
Sbjct: 234 MPFASVVVGKSFRNEISPRSGLLRMREFTMAEIEHY-VDPLNKDH-------------RR 279

Query: 188 LG-LKSIPMRAESGPIGGDLSHEFIVL----------ADTGETQVFCSKDFMDFPIPSEN 236
              ++++ M+  +  I      E I +           +      F ++  +       N
Sbjct: 280 FNEVENVKMKFLTREIQMSGKEEVIEMKIGEAVARGILENTTLAYFLARIHLFLIRIGMN 339

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS- 295
            +        +      A     +++     +         +A  + V H      K   
Sbjct: 340 QEKLRFRQHMNNEMAHYASVCWDAELLTSYGWIECVGCADRAAYDLTV-HSEKTKEKLVV 398

Query: 296 -----LPMSAT--FKGADGK------------------------DHYVQMGSYGIGAMRV 324
                 PM  T      D K                        ++   +     G  R+
Sbjct: 399 RELLPKPMEVTEWVVNVDKKKIENLKFPSSLFTIEQVKKTISVREYIPNVIEPSFGIGRI 458

Query: 325 VAAVIESSH-------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           + ++IE S+       D   + +P  VAP K  L+ +  +        +K+   L ++G 
Sbjct: 459 LYSLIEHSYWIRSDDVDRCVLSFPPIVAPVKCLLVPLSNNS-AFDPIIDKLSFELRQLGI 517

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               DD    IG +++  D LG P  + V  + V+D  + ++ R T  +   S +E++  
Sbjct: 518 SHKVDDSSAAIGRRYSRNDELGTPFGITVDFQTVNDGSLTLRERDTTRQIRASEKEILRV 577

Query: 438 ASHR 441
               
Sbjct: 578 IKEL 581


>gi|293603800|ref|ZP_06686216.1| serine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292817798|gb|EFF76863.1| serine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 448

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWL--PLGQKALDNVNAIIREEQN-RTGAIEMSVP 72
           RD       L L   M  + S   +S++  P+  +    ++  + + Q    G  E   P
Sbjct: 145 RDHVAIGEPLGLDFDMAAKLSGARFSFMRGPI-ARLHRALSQFMLDLQTGTHGYTECYTP 203

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA----DRN-----------DKAMIYGPTHEEVMTDI 117
            + +A     +G+   +  +M  ++    D +            +      T E  +T +
Sbjct: 204 YIVNASTLYGTGQLPKFKDDMFAVSKGGGDDDPKVDAAGNPYVREDQYLISTSEITLTSV 263

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
            R  I++  +LP         FR E     R   G++R  +F   +       P+ S  +
Sbjct: 264 ARDTIQAAADLPLKLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQI-TQPDQSYEA 322

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              M     R+   LGL    M   +G +G
Sbjct: 323 LEDMVGHAERVLQLLGLPYRVMLLCTGDMG 352


>gi|145532883|ref|XP_001452194.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419877|emb|CAK84797.1| unnamed protein product [Paramecium tetraurelia]
          Length = 299

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 23/188 (12%)

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  F    +  R+E+     G+ R R F   DA+ F    +  +          
Sbjct: 4   HSYRDLPVRFADFGVLHRNEVHGALSGLTRVRRFQQDDAHIF-CRMDQIQEEIKSCLDFL 62

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G +   +   + P     + E    A+    Q            P +      
Sbjct: 63  SYIYSLFGFEF-KLYLSTRPEKFLGTKEVWDNAEYQLEQGLKKFGKPFEVNPGDG----- 116

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                          A      + KL+D+     +     ++      F  +Y       
Sbjct: 117 ---------------AFYGPKIDVKLYDAYKREHQCGTIQLDFNLPERFNLQYRASEDVQ 161

Query: 302 FKGADGKD 309
               D + 
Sbjct: 162 EVQQDKEQ 169


>gi|33240229|ref|NP_875171.1| histidyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|39932092|sp|Q7VCG1|SYH_PROMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33237756|gb|AAP99823.1| Histidyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 421

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 140/406 (34%), Gaps = 43/406 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP        V  +  +   R G  E+  P L+  +L+    G   D  GKEM  
Sbjct: 9   GMVDLLPSHSARWQKVETLAIKNFERAGIKEIRTPILELTELFSRGIGEATDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  ++    P     +      +    +  P   +     FR E RP+ G  R R+F
Sbjct: 69  FEDRGGRSCTLRPEGTASVARAVIQNGLL-KQGPQRLWYGGPMFRYE-RPQAG--RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--------LS 207
                  F L+   S      +        + LGL+++ ++  +     D        +S
Sbjct: 125 HQIGVEFFGLSSVRSDAE---LISIAWDFLNELGLRNLKLQINTLGTSEDRKNYRSKLIS 181

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                    GE  +   K      + S+N++   +I+   ++       +       +K+
Sbjct: 182 WLENFPELLGEDSLNQLKKNPLRILDSKNSNIQKLINDAPLLGDHLNQSSINRFESLQKV 241

Query: 268 FDSLPEN---KRVSARGIE--VGHIFY-----FGTKYSLPMSATFKG---ADGKDHYVQM 314
            ++L       +   RG++      F       G + ++     + G     G  H   +
Sbjct: 242 LNTLKIPFSVNQRLVRGLDYYCHTAFEIISDDLGAQATVCGGGRYDGLVEQLGGPHAPAI 301

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G + +G  R++  +        G    + + P  + LIN     +        +  +L  
Sbjct: 302 G-FAVGMERLLILI--------GDRLANEIHP-DVYLIN---KGEKAEAEALLLARQLRL 348

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               V  DD G     QF  A+ +G    +++G + ++  ++ +K 
Sbjct: 349 QDFIVELDDSGAAFAKQFKRANRVGATWAIVIGDEEINKGEIRLKR 394


>gi|238789329|ref|ZP_04633116.1| Seryl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238722661|gb|EEQ14314.1| Seryl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 430

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 21/239 (8%)

Query: 12  QENPRDAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
           +    D E+  H  +     G+    +    G    +  GQ A     +   + +    +
Sbjct: 128 EPRKYDFEVRDHVSLGEMAGGLDFAAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFR 119
            G +E  VP L +      +G+   +G ++       +++        PT E  +T++ R
Sbjct: 188 HGYLETYVPYLVNHATLYGTGQLPKFGGDLFHTKPLEEESDSSNYALIPTAEVPVTNLVR 247

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I    +LP         FR E     R   G++R  +F   +       PE S  +  
Sbjct: 248 DEILEEESLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-TRPEDSMAALE 306

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           ++     ++   L L    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 307 ELTGHAEKVLQLLELPYRKVLLCTGDMGFGSSKTYDLEVWLPAQNTYREISSCSNMWDF 365


>gi|294661131|ref|YP_003573006.1| hypothetical protein Aasi_1519 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336281|gb|ACP20878.1| hypothetical protein Aasi_1519 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 434

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 8/172 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  + G  E+  P L +      +G+      +M  
Sbjct: 175 GAGFPVYKGKGARLQRALINFFLDEARKAGYEEIQPPILVNKASAYGTGQLPDKEGQMYE 234

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           LA   ++ +   PT E  +T+++R  I S   LP         FR E         G+ R
Sbjct: 235 LA---NEPLYLIPTAEVPVTNLYRDQILSKDVLPIRHVAYTPCFRREAGSWGSHVRGLNR 291

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             +F   +     L PE S  +   M      +  +L L    ++  SG +G
Sbjct: 292 LHQFDKVEIVEISL-PELSYQALETMRRYVESLVQKLELPYRVLKLCSGDLG 342


>gi|312130764|ref|YP_003998104.1| seryl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311907310|gb|ADQ17751.1| seryl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 423

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G K    +      E  + G  E+  P + +A     +G+      +M  
Sbjct: 164 GAGFPFYKGKGAKIQRALINFFLNEAEKAGYFEVQPPIVINAASGFGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+++R  I S   LP         FR E         G+ R
Sbjct: 224 ATADD---LYLIPTAEVPVTNMYRDVILSENELPKKNVAYTPCFRREAGSWGAHVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   +      TPE S  +  +M      +  +L L    ++   G +
Sbjct: 281 LHQFDKVEIVQI-TTPEKSYDALEEMLNHVRGLLEKLQLPYRILKLCGGDM 330


>gi|154494911|ref|ZP_02033916.1| hypothetical protein PARMER_03955 [Parabacteroides merdae ATCC
           43184]
 gi|154085461|gb|EDN84506.1| hypothetical protein PARMER_03955 [Parabacteroides merdae ATCC
           43184]
          Length = 424

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 19/255 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  E P+DA +   +L  +  +I           G   +   G +    +     +E  +
Sbjct: 133 METELPKDA-LPHWELAKKYDLIDFDLGVKITGAGFPVYKGQGAQLQRALINFFLDEARK 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  PT+ +A     +G+      +M      +   +   PT E  +T+I+R  I 
Sbjct: 192 SGYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCEVDD---LYLIPTAEVPVTNIYRDVIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M  
Sbjct: 249 DEKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRID-KPEHSKQSHQEMLD 307

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
               +  +L L    +R   G +          E    A     +V    +F ++     
Sbjct: 308 HVEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWLEVSSVSNFDNYQANRL 367

Query: 236 NTDFDDIISLNSIVE 250
              + D      +  
Sbjct: 368 KCRYRDENKKTQLCH 382


>gi|19713538|gb|AAL94319.1| Seryl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 424

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +  A++   +G+   + ++M
Sbjct: 161 SGSRFVLYRGAAARLERAIINFMLDVHTLEEGYTEHITPFMVKAEVCEGTGQLPKFEEDM 220

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 221 YKTTD----DMYLISTSEITMTNIHRKEILEQAELPKYYTAYSPCFRREAGSYGKDVKGL 276

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 277 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 335

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 336 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 379


>gi|15896443|ref|NP_349792.1| glycyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|59798597|sp|Q97EB8|SYG_CLOAB RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|15026266|gb|AAK81132.1|AE007815_2 Glycyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325510601|gb|ADZ22237.1| glycyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 462

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/391 (14%), Positives = 117/391 (29%), Gaps = 75/391 (19%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR----LADRNDKAMIY 106
           + +   I+++        +  P     +    S R  +    M +    + +     +  
Sbjct: 125 EKLENFIKDKH-------IKCPKCGKENF--TSIRKFNL---MFKTFQGVTEDASSEIYL 172

Query: 107 GPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
            P   + +   F++    S + +PF   QI   FR+E+ P     R+REF   +   F  
Sbjct: 173 RPETAQGIFVNFKNVQRSSRKKVPFGIGQIGKAFRNEITPGNFTFRTREFEQMELE-FFC 231

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            P      +             LG+    +R        D S E +V      + +    
Sbjct: 232 KPGTDLEWFKYWKDYCWSFLLDLGINKENLRF------RDHSAEELVFYSKATSDI---- 281

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
               FP            +   + +         + +        +P     S       
Sbjct: 282 -EYKFPFGWGELWGVADRTDYDLKKHMDHSGEDMNYLDPSTNEKYVPYVIEPS------- 333

Query: 286 HIFYFG-TKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                G  + +L         +   G D  + +                         + 
Sbjct: 334 ----LGADRVALAFLIDAYDEEELEGGDQRIVLH------------------------FH 365

Query: 342 DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             +AP K +++ +     +   D   KI ++ +     + +D+ G  IG ++   D +G 
Sbjct: 366 PQIAPIKAAVLPLSKKLSEKALDVYSKISSKFN-----IEYDETG-SIGKRYRRQDEIGT 419

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           P  + V    + D  V I+ R +  +  + +
Sbjct: 420 PYCITVDFDTLEDEAVTIRDRDSMSQVRVKI 450


>gi|319399907|gb|EFV88153.1| seryl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 428

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G      +   +  +   + G  EM  P L +AD    +G+   + +++ ++     + +
Sbjct: 170 GALLERALMNYMLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNFYRDEIIQPGVLPELFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
               + PE S ++  +M  +   I   L L    +   +G IG   S     E  + +  
Sbjct: 287 VRI-VQPEDSWNALEEMTQNAEAILEELDLPYRRVILCTGDIGFSASKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     N  F
Sbjct: 346 DYKEISSCSNCTDFQARRANIRF 368


>gi|229592440|ref|YP_002874559.1| histidyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|259511954|sp|C3K1L3|SYH_PSEFS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229364306|emb|CAY52045.1| Histidyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 429

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 146/436 (33%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP          + +    +  G  ++ +P ++  +L+  S G   D   K
Sbjct: 6   QAIRGMNDILPEQTPLWRYFESTVARLLDNYGYKQIRMPIVEFTELFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H  +    P   + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAACVRAVLEHGLTGGGQPQKLWYIGPMFRHE-RPQKG--R 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
            R+F       F+L           + V   R++  LG++   ++ E   +G   S    
Sbjct: 123 YRQFHQIGLEVFNLDGPDIDAE---LIVLTWRLWGVLGIRD-AVKLELNSLGTSESRGRY 178

Query: 209 -----EF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                E+    L    E      K      + ++N D   ++     +  +    + T  
Sbjct: 179 RVALVEYLSAHLDKLDEDSQRRLKTNPLRVLDTKNADTQAVLVNAPKMADYLDDESRTHF 238

Query: 262 VHNEKLFDSLPEN---KRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKD 309
              +   D+            RG++     +F       G + ++     + G       
Sbjct: 239 EGLKARLDAAGIPYVINPKLVRGLDYYSKTVFEWVTEKLGAQGTVCAGGRYDGLVEQMGG 298

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIK-AHDQVCRDACEK 367
                  + +G  R++  ++E+         P+ ++    + L     A +       EK
Sbjct: 299 KPTTGVGFAMGIERLIL-LLETLEQ-----VPEEISRQVDVYLCAFGEAAELAALALSEK 352

Query: 368 IYARLSKVGCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
           +  +L  +   +         G  +  F  AD  G    +I+G   ++   +  K  R  
Sbjct: 353 VRDQLPNLRLQI-----NAGAGSFKSQFKKADKSGALYALILGEDELAQQVIGFKPLRGQ 407

Query: 424 GIREDMSLEEVINYAS 439
           G +++++ + +  + +
Sbjct: 408 GEQQNIAFDALAAHLA 423


>gi|51244423|ref|YP_064307.1| histidyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|81692950|sp|Q6AQS3|SYH_DESPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|50875460|emb|CAG35300.1| probable histidyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 429

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 88/418 (21%), Positives = 138/418 (33%), Gaps = 43/418 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG    LP   +    V  I R+   R    E+ +P L+  DL+  S G   D   KEM 
Sbjct: 18  KGFKDILPGEVELWQQVEKITRDIFTRHNFSEIRMPILEQTDLFARSIGEATDIVEKEMY 77

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPF-TFYQIQLKFRDELRPRFGVMR 151
              D+            E    + R++I++  Y   P    + I   FR E RP+ G  R
Sbjct: 78  TFVDKK------VTMRPEATASLIRAYIENGLYVAKPVQRLFTIGPMFRHE-RPQKG--R 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-----RAESGPIGGDL 206
            R+F   D                 M      +F  LG+            E  P+    
Sbjct: 129 LRQFHQMDIEVLGSVNPLVDAELMAMGSM---VFRTLGINVRLEMNSLGCPECRPVYRQA 185

Query: 207 SHEF------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
             EF       +  D            +D          ++  S+   +    A +  T 
Sbjct: 186 LVEFIEDRFEHLCDDCKRRSKTNPLRVLDCKNAGCRAQVEEAPSILDYLCGDCADHFDTV 245

Query: 261 DVHNEKLFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
               E L      NK    RG++      F F T      SA   GA G+   +     G
Sbjct: 246 CTTLESLEIPYSLNK-FMVRGLDYYCRTTFEFITDDLGAQSAV--GAGGRYDGLVEKLGG 302

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDS-----VAPFKISLINIKAHDQVCRDACEKIYARLS 373
              M  +   I      + I+         VA  K+ L  I   D   + AC  +   L 
Sbjct: 303 PVGMPGIGFAIGM---ERLILLLQQKETEFVA-EKLDLFVIGLGDAATKLAC-ILSQDLR 357

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +G  V  D  G  + +Q  +A+  G    +I+G   +   K  +K+  +  + +++L
Sbjct: 358 GLGVGVAVDYEGRSLKAQMKLANKAGVAATLILGENEIETGKAVLKNMDSQEQCEVAL 415


>gi|291398353|ref|XP_002715854.1| PREDICTED: seryl-tRNA synthetase isoform 1 [Oryctolagus cuniculus]
          Length = 538

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 92/330 (27%), Gaps = 54/330 (16%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G   +   G        +           G   +  P     ++  E  +   + +E+ 
Sbjct: 189 AGSRGYFLKGVLVFLEQALIQYALRTLRNRGYTPIYTPFFMRKEVMQEVAQLSQFDEELY 248

Query: 95  RLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
           ++         D +        T E+ +  + R       +LP  +  +   FR E+   
Sbjct: 249 KVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSH 308

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEG-SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            R   G+ R  +F   + + +    +  S   + +M  +    +  LG+    +   SG 
Sbjct: 309 GRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIATAEEFYQSLGIPYHIVNIVSGS 368

Query: 202 IGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +    S     E          ++    +  D+        +     +    +      A
Sbjct: 369 LNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKRKNNLPLSA 428

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                    LF         S + +E  H                           + + 
Sbjct: 429 QNKLEATSSLF---------SPKKVEFVH--------------------------MLNAT 453

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                R + A++E+    KGII P+ +  F
Sbjct: 454 MCATTRTICAILENYQTEKGIIVPEKLKEF 483


>gi|288803216|ref|ZP_06408650.1| glycine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288334257|gb|EFC72698.1| glycine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 515

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 70/514 (13%), Positives = 151/514 (29%), Gaps = 107/514 (20%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV- 71
           +I SH      G +   S        +Y +   G +  +N+     +      +  + + 
Sbjct: 9   KIVSHCK--EYGFVFPSSDIYDGLAAVYDYGQNGVELKNNIKQYWWQSMVLLHSNIVGID 66

Query: 72  -PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                   +W  SG  D++      L D  D    Y   +  +   I +   K  + +  
Sbjct: 67  ASIFMHPTVWKASGHVDAFND---PLIDNRDSKKRYRADN-LIEDQIGKYEEKIEKEVAK 122

Query: 131 TFYQIQLKFRDELRPRFGVMR--------------------------------------- 151
              +    F DE + R    R                                       
Sbjct: 123 AAKKFGESF-DEAKFRETNPRVLENQKKRDDLHARYTEAMQGPDLEALKQIILDEGIVDP 181

Query: 152 ---------SREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFH--RLGLKSIP 194
                     R+F +  +     + + +   Y +      +FV++L +    R+ L    
Sbjct: 182 ISGTTNWTDVRQFNLMFSTEMGASADATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGI 241

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--- 251
            +     IG    +E +        + F   +   F  P     + +    + +      
Sbjct: 242 CQ-----IGKAFRNEIVARQFVFRMREFEQMEMQFFCQPGTEMKWFEYWKKHRLAWHEGL 296

Query: 252 --------WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSAT 301
                   +          +     +           GI     F      KYS      
Sbjct: 297 GMGDENYRFHDHEKLAHYANAATDIEFHMPFGFKEVEGIHSRTNFDLSQHEKYSGRQVKY 356

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLI 352
           F     +++   +    IG  R+  +V+  S+  +          +  P+ +AP K +++
Sbjct: 357 FDPERNENYTPYVVETSIGVDRMFLSVMCHSYTEEALENGSSRVVLKLPEPLAPVKCAVL 416

Query: 353 NIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +   D    +  ++I   L        +       + IG ++   D +G P  V V   
Sbjct: 417 PLVNKD-GLPEKAQEIVNSLKFHFNTHMEAK-----DSIGKRYRRQDAIGTPFCVTVDGD 470

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++D+ V +++R +  +E + +E++      R S
Sbjct: 471 TLTDNTVTLRYRDSMKQERVPVEKLREIIEDRVS 504


>gi|94987428|ref|YP_595361.1| histidyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731677|emb|CAJ55040.1| Histidyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 419

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 140/420 (33%), Gaps = 43/420 (10%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEMLRLADRNDKAMI 105
                +    R   +     E+ +P L+  +L+  S   ++    KEM    DR ++++ 
Sbjct: 20  NMFSYIEHTARAIFSLYNYEELRIPLLERTELFCRSIGLETDIVQKEMYTFLDRKNRSLT 79

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   +  + K  +     F  I   FR E RP+ G  R R+F   +     +
Sbjct: 80  LRPEATASIIRAYIENKKYTQEAVSKFLSIGPMFRYE-RPQKG--RMRQFHQVNCECLGV 136

Query: 166 TPEGSKHSYNKMFVSYLRIFH----RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           T          M + +L        RL + S+   A+  P+  D+        D  +TQ 
Sbjct: 137 TDSYIDAEIIIMLMQFLTALEIKDIRLEINSLGC-ADCRPLYKDI---LQKWLDQLDTQT 192

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
            C                D  +S           +           F ++     +    
Sbjct: 193 LCDDCQRRKETN-PLRVLDCKVSFCKEKTSQAPHFLDYQCKTCLDQFSTVTTLLSLENIP 251

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM--GSYGIGAMRV---------VAAVIE 330
             + H    G  Y +  +     ++          G Y     ++          A  +E
Sbjct: 252 YIINHRLVRGLDYYMRTTFEVISSNIGSQGAIAGGGRYNGLVAQLGGPDIPGIGFACGME 311

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE---Q 387
                  ++ P    P    +I +   +   +D    I ++L K G        GE    
Sbjct: 312 RLA----LLLPRKDLPRPDFMIGVFIAEG--KDKAFSISSQLHKAGF------SGEMLFN 359

Query: 388 IGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +GS       A+       +++G++ ++ + + IK+  TG++E +SL++V +Y   + S 
Sbjct: 360 LGSMKSLMRHANKARVRYCLLLGTEELALNSISIKNMDTGVQEKISLDKVSSYFITKLSK 419


>gi|262305733|gb|ACY45459.1| glu- + pro-tRNA synthetase [Ephemerella inconstans]
          Length = 134

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      ++  + ++       S+G+   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIVYEDPETQEKKFVFQNSWGLT-TRTIGVMVMVHADNQ 73

Query: 337 GIIWPDSVAPFKISLIN------IKAHDQVC-RDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +I ++       +K  D+    D+C+++   L      V  D       
Sbjct: 74  GLVLPPRVACIQIVIVPCGITASMKDEDRKALLDSCQELENSLVATQVKVKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|254479915|ref|ZP_05093163.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214039477|gb|EEB80136.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 428

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 136/449 (30%), Gaps = 73/449 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP    +   V  +I       G  E+ +P ++  DL+        D   KEM  
Sbjct: 9   GMNDILPDVTPSWQYVETVIGSLMASYGYSEVRMPIVEQTDLFRRGVGETTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN++++   P            H           +     FR E RP+ G  R R+F
Sbjct: 69  FLDRNEESLTLRPEGTAGCVRAAIQHGLLNTV--QRLWYTGAMFRYE-RPQKG--RQRQF 123

Query: 156 LMKDAYSF-----DLTPE----------------------------GSKHSYNKMFVSYL 182
               A +F     D+  E                             S+++Y    V+YL
Sbjct: 124 HQVGAEAFGVASPDMDAEVILLTARLWRELGIAEDVQLQLNSIGNAQSRNAYRDALVAYL 183

Query: 183 RIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           R       +    R +S P  I    + E   + D   + V    +             D
Sbjct: 184 RERVDALDEDSQRRLDSNPLRILDSKNQETQAVLDGAPSLVDFLDEESAADFSRLRELLD 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 S+  +        +    E + D L     V   G   G +   G         
Sbjct: 244 AAGVAYSLNPRLVRGLDYYNKTVFEWVTDRLGAQGTVCGGGRYDGLVEQLG--------- 294

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ- 359
                 GK        + +G  R+V  ++E          P + A   + +++     Q 
Sbjct: 295 ------GKSVPGV--GFAMGIERLVL-LLEECGQ-----LPPAEASADVYVVSFGDSAQT 340

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               A E++   L   G  +   + G    SQ   AD  G  L +I G   V+ + V IK
Sbjct: 341 EALAAAEQLRDALP--GLRIVQHNGGGSFKSQMKKADKSGARLALIWGDDEVAANTVSIK 398

Query: 420 --HRLTGIR---EDMSLEEVINYASHRFS 443
                   R   + ++  E+        +
Sbjct: 399 PLREQNNERVGQQSVARAELEQTLRALLA 427


>gi|332534673|ref|ZP_08410504.1| histidyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035885|gb|EGI72367.1| histidyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 372

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 15/198 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +    V +I+RE     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAVRGMNDCLPGDTQVWQKVESILRETVASFGYQEIRFPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRN   +   P    V       +   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADRNGDLLTLRPEGTAVCVRAGNQNGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F      +F +           + +   +++   G+    +R E   +G +      
Sbjct: 122 YRQFHQFGLETFGIATADIDAE---VILLTAQLWEAFGITD-HVRLELNSLGSNE----- 172

Query: 212 VLADTGETQVFCSKDFMD 229
             AD  +  V   +  +D
Sbjct: 173 ARADYRDALVAYLEQHID 190


>gi|330507921|ref|YP_004384349.1| glycyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928729|gb|AEB68531.1| glycyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 581

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRD 363
             +     G  R++ ++++ S+    I         +   VAP +++++ +    ++   
Sbjct: 426 PHVIEPSFGIDRILYSILDHSYYEDEIDGEKRAVLRFKPQVAPIEVAVLPLMDRSELVGP 485

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +KI   L   G    +D  G  IG ++   D +G P +V +  + + +  V I+ R +
Sbjct: 486 -AKKILEELRSRGMRTDYDTSG-SIGRRYRRNDEIGTPYEVTIDYETIEEGTVTIRDRDS 543

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  ++  +V++      +
Sbjct: 544 MSQVRVARWQVVDKLQALLN 563



 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 68/232 (29%)

Query: 23  HKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQ 75
           ++L  R G +         + G Y + PLG      +  I R+      G  E+  PT+ 
Sbjct: 8   NELARRRGFLWPAFELYGGAAGFYDYGPLGAPLKRRIEDIWRQYFVIAEGFAEIEAPTIG 67

Query: 76  SADLWVESG-------------------RYDSYGKEMLRLADRNDKAMIYGPTHEEVMT- 115
              ++  SG                   R D   K ++ + D      IY    E  +T 
Sbjct: 68  VEGIFQASGHLSGFSDPLTGCKECKEVYRADHLIKHIIEVPDALTNEEIYRCMQENEITC 127

Query: 116 --------------DIFRSHI-------------------------KSYR--NLPFTFYQ 134
                          +F++ I                           Y    LPF   Q
Sbjct: 128 PECGGELSSVYEFNLMFKTMIGPGNKMTGYMRPETAQGMFINFPRLLRYFRGALPFAAVQ 187

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           I   +R+E+ PR GV+R REF   +A  F    + +   ++++    ++ + 
Sbjct: 188 IGKSYRNEISPRQGVIRLREFTQAEAEIFIDPRDKTHPRFDEVKAIRMKFYS 239


>gi|224477947|ref|YP_002635553.1| seryl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783046|sp|B9DPW5|SYS_STACT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|222422554|emb|CAL29368.1| Seryl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 428

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
                  G +    +   +  +   + G  EM VP L +A+    +G+   + +++ ++ 
Sbjct: 163 FVFLTNEGAQLERALMNYMLTKHTTQHGYTEMMVPQLVNANSMYGTGQLPKFEEDLFKV- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               + +   PT E  +T+ +R  + S   LP  F      FR E     R   G++R  
Sbjct: 222 --EKEGLYMIPTAEVPLTNYYREEVLSADQLPGKFTAQSACFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +   F   PE S  +  ++  +   I   L L    +   +G +G   S  +
Sbjct: 280 QFDKVELVRF-EKPEDSWDALEQLTSNAEAILEELELPYRRVILCTGDLGFSSSKTY 335


>gi|68076963|ref|XP_680401.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56501321|emb|CAH98677.1| hypothetical protein PB001269.02.0 [Plasmodium berghei]
          Length = 384

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP-TLQSADLWV 81
           ++++++ +I  +   G Y   P      + +      E  +        P  +    L  
Sbjct: 250 QVIVKSELIEYYDISGCYILRPASYYIWECIQTFFNNEIKKLDVENSYFPLFVTKNKLEK 309

Query: 82  ESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D    + +    T E +M  +F   I+S+R+LP    Q   
Sbjct: 310 EKNHIEGFSPEVAWVTKYGDTNLPEEIAIRLTSETIMYSVFSKWIRSHRDLPLKLNQWNT 369

Query: 138 KFRDELRPRFGVMRS 152
             R E +     +R+
Sbjct: 370 VVRWEFKQPTPFIRT 384


>gi|225849021|ref|YP_002729185.1| seryl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643211|gb|ACN98261.1| seryl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 417

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 13/209 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +    + G  E+  P L  +     +G+   + +++ ++ D +   +   PT
Sbjct: 176 RALINFMLDVHTKQHGYTEVWTPLLVKSKTLQGTGQLPKFKEDLYKIEDED---LYLIPT 232

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I     LP  +      FR E     +   G++R  +F   +     +
Sbjct: 233 AEVTLTNLHADEIIPEDQLPKYYTAYTPCFRKEAGSHGKDVRGILRQHQFDKVELVKI-V 291

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
            PE S +   K+     +I   L L    +   +G +G   +     E  + +     ++
Sbjct: 292 KPEDSYNELEKLVNEAEKILQLLELPYRVVLLCTGDMGFSAAKTYDIEVWIPSQNRYREI 351

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +  DF        + D    N  V 
Sbjct: 352 SSCSNTEDFQARRAMIRYKDKEGKNHFVH 380


>gi|297621143|ref|YP_003709280.1| hypothetical protein wcw_0913 [Waddlia chondrophila WSU 86-1044]
 gi|297376444|gb|ADI38274.1| hypothetical protein wcw_0913 [Waddlia chondrophila WSU 86-1044]
          Length = 509

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 13/167 (7%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-----IGAMRVVAAVIESSHDG 335
            IE       G ++S P     + A G      M S+        ++  + A++  S  G
Sbjct: 341 AIEARFTDSLGREWSGP-RIELRDASGFQIDQSMDSFVLVGSVFRSLESLIALLLESSKG 399

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +   W   +AP ++ ++ +K  D        +I   L + G  V  D     +  + +VA
Sbjct: 400 ELPFW---LAPEQVRILPVKQED---VAWAVEIAEELIENGYRVHCDADPGSLSEKVSVA 453

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-MSLEEVINYASHR 441
           +    P  V+VG +   +  V ++    G +   +S E  +     +
Sbjct: 454 NQYKVPYIVVVGKREREEQAVSVRCSSKGNKASVVSFELFMEELKKQ 500


>gi|307132059|ref|YP_003884075.1| histidyl tRNA synthetase [Dickeya dadantii 3937]
 gi|306529588|gb|ADM99518.1| histidyl tRNA synthetase [Dickeya dadantii 3937]
          Length = 424

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 10/173 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPAETALWQRIEDSLKQVLRGYGYSEIRMPIVEQTSLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGILYNQE-QRLWYIGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            R+F       F L           M +   R +  LG+    +  E   IG 
Sbjct: 122 YRQFHQLGCEVFGLKGPDVDAE---MILMTARWWRVLGIDQ-HVSLELNSIGS 170



 Score = 44.2 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   EK+   L ++     +     +   QFA AD  G  + +++G   V+  +V 
Sbjct: 341 QHAAIQLAEKVRDALPQLKLMTNYGGGNFK--KQFARADKSGARVALVLGETEVAAGQVV 398

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +K+  +G +E ++  +V    +   +
Sbjct: 399 VKNLTSGEQETLAQADVAARLAALLN 424


>gi|121593583|ref|YP_985479.1| histidyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|189082284|sp|A1W578|SYH_ACISJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|120605663|gb|ABM41403.1| histidyl-tRNA synthetase [Acidovorax sp. JS42]
          Length = 429

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 135/441 (30%), Gaps = 63/441 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      + +   +R    R     +  P ++   L+V   G   D   KEM 
Sbjct: 8   KGMNDILPPDSARWEWLEDKVRTLMARYAYRNIRTPIVEPTPLFVRGLGEVTDIVEKEMY 67

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              DR N + +   P     +      H   Y +     Y +   FR E RP+ G  R R
Sbjct: 68  SFEDRLNGEQLTLRPEATAGVVRAVVEHSMLY-DGGKRLYYMGPMFRHE-RPQRG--RYR 123

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F    A +       +      + +    ++  LGL++  +R E   +G          
Sbjct: 124 QFHQIGAEALGFPGAEADAE---IILLAHALWAELGLEN--VRLELNSLGQPDERRAHRA 178

Query: 214 ADTG----------ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           A             E             + ++N     ++     +  +    +      
Sbjct: 179 ALIAYLEQHMDVLDEDARRRLHSNPLRILDTKNPAMQALVEGAPRLIDFLGEASLQHFET 238

Query: 264 NEKLFDSLPENK---RVSARGIEVG--HIFYF-------------GTKYSLPMSATFKGA 305
            + + D+            RG++     +F F             G +Y        +  
Sbjct: 239 VKAILDANGVVWSLNPRLVRGMDYYNLTVFEFVTDQLGSQGTICGGGRY----DYLIEQI 294

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            GK        + +G  RV+  + E              A    +++     D       
Sbjct: 295 GGKSAPAV--GWALGVERVLELLKEQEAQVARP------AADAYAVVP----DASALPVV 342

Query: 366 EKIYARLSKVGCDVFWDDM---GEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                RL   G  V        GE +GS    F  AD  G    ++ G+  ++   V +K
Sbjct: 343 MATLQRLRAQGVSVQMHSSTAAGEGMGSMKSQFKKADASGARYALVFGADELARGAVTVK 402

Query: 420 -HRLTGIREDMSLEEVINYAS 439
             R +G + +  L  +  +A+
Sbjct: 403 PLRDSGEQAERPLAALAEWAA 423


>gi|109899430|ref|YP_662685.1| histidyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|122971704|sp|Q15R57|SYH_PSEA6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|109701711|gb|ABG41631.1| histidyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 426

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 140/436 (32%), Gaps = 42/436 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP            IRE     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAIRGMNDCLPEQSGLWQWAEKAIREVVASYGYQEVRTPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRND ++   P     +      H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADRNDDSLTLRPEGTASVVRAGNEHGLLYNQQ-QRLWYLGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F       F L           +     R++ + G+    +  E   +G + + E  
Sbjct: 122 YRQFHQFGVEVFGLAGPDIDAE---VIALSARLWKKFGISE-QVTLELNSLGSNEARETY 177

Query: 212 VLA----------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A             E  +   +      + S+N      I+    +  +    +    
Sbjct: 178 RKALVEFLLARKEHLDEDSLRRLESNPLRVLDSKNPQVQAAITDAPSLIDYLDAESKEHF 237

Query: 262 VHNEKLFDSLPENKR---VSARGIEVG--HIFYFGTKYSLPMSATFKGA--DGKDHYV-- 312
               +  D+L    R      RG++     +F + T           G   DG    +  
Sbjct: 238 HALCERLDALGIQYRVNPRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGG 297

Query: 313 --QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
               G      M  +  ++++S   + +      +P  + +  +    ++      +I  
Sbjct: 298 KSTQGVGFAIGMERLVLMLQASGAEEFVA-----SPVDVYVTAMGDEVEL---YALQIAE 349

Query: 371 RLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRE 427
            L  V     V     G     Q   AD     + +++G     + +V IK  R    + 
Sbjct: 350 SLRDVMPTLRVQTHFGGGNFKKQMKRADKSAARVALVLGETEQQEEQVSIKFLREDKPQS 409

Query: 428 DMSLEEVINYASHRFS 443
            ++  E+ +     FS
Sbjct: 410 RIARSELESTLVELFS 425


>gi|92114436|ref|YP_574364.1| seryl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
 gi|122419603|sp|Q1QV43|SYS_CHRSD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|91797526|gb|ABE59665.1| seryl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 425

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 17/235 (7%)

Query: 17  DAEIASH-KLMLRTGMI-HQHSK---GIYSWLPLG--QKALDNVNAIIREEQ-NRTGAIE 68
           D E+  H  L  + G +  + +    G    +  G   +    +   + ++Q    G  E
Sbjct: 133 DFEVRDHVDLGAKFGYLDFEMAAKLTGSRFAVMRGPIARLHRALAQFMLDKQTREHGYEE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             VP + +      +G+   +G+++ +L    D      PT E  +T+I R  I +   L
Sbjct: 193 CYVPYIVNDASLTGTGQLPKFGEDLFKL--EGDHDFYLIPTAEVPLTNIAREQIFTPAEL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   G++R  +F   +     + P  S  +   M      I
Sbjct: 251 PLKLTAHTPCFRSEAGAYGRDTRGMIRQHQFDKVEMVQI-VDPATSYDALESMRGHAEAI 309

Query: 185 FHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              L L    +   +G +  G   +++  V   + ET    S         +   
Sbjct: 310 LQALELPYRVVTLCAGDMGFGAAKTYDLEVWLPSQETYREISSISNCEDFQARRM 364


>gi|13541818|ref|NP_111506.1| seryl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|30173200|sp|Q979Z3|SYS_THEVO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|14325255|dbj|BAB60159.1| tRNA synthetase Ser [Thermoplasma volcanium GSS1]
          Length = 441

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 83/255 (32%), Gaps = 22/255 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHS----KGIYSWLPLGQKALDN--VNAIIREEQN 62
            ++ E P+       +L    G+I   S     G   +    +       +     +  +
Sbjct: 151 EVIDERPKSHVDLGQEL----GIIDLESAAKISGARFYFIKNRLLKLEMALENYAVDFLS 206

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P + + +    +   +++   + ++ D +   +    T E  +  +  +  
Sbjct: 207 QRGFTVVEPPYMLNLESMRGATDLETFKDTLYKIEDED---LYLIATSEHSIASMLSNEF 263

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + LP     +   FR E     +   G+ R  +F   + + F   PE S     ++ 
Sbjct: 264 LEEKELPIRVAGVSACFRREAGAHGKDTKGIFRVHQFNKIEQFIF-CKPEDSWDYLEEIL 322

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGG----DLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +   I+  LG+    +   SG +G         E    A     ++  + +  D+   S
Sbjct: 323 SNAEEIYRSLGIPYRVVNVCSGELGRLAAKKYDIEAWFPAQGKFREIVSASNDTDYQARS 382

Query: 235 ENTDFDDIISLNSIV 249
            N  +        + 
Sbjct: 383 LNIKYRKSGGNEFVH 397


>gi|294508373|ref|YP_003572431.1| glycyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294344701|emb|CBH25479.1| glycyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 512

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 69/488 (14%), Positives = 146/488 (29%), Gaps = 103/488 (21%)

Query: 30  GMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           G I Q S         Y + P+G +   NV     +         + +    +     W 
Sbjct: 50  GFIVQSSEIYGGLSATYDYGPMGVELKRNVKEKWWQSMVYQNDDIVGLDASIMMHPKTWD 109

Query: 82  ESGRYDSYGKEMLRLADRN--------------------------------DKAMIYGPT 109
            SG  +++      L D                                  ++ +     
Sbjct: 110 ASGHTEAFND---PLIDDKASGNRYRADELIENYIRALREEGEEAHAEAVRERLVEALNA 166

Query: 110 HEEV----MTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            EE+       I    I +  +  F +    Q  L F  E+ P             D   
Sbjct: 167 GEEMNDALHAIIMDEEIPAPESGAFDWTDVRQFNLMFETEMGP------------VDGQK 214

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             L PE ++  +     +  R   RL +     +     IG    +E +        + F
Sbjct: 215 VFLRPETAQGIFVNFHNA--REPARLHVPFGVAQ-----IGKAFRNEIVARQFVFRMREF 267

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +   F  P    D+ +      +    +          +   F    +    +   +
Sbjct: 268 EQMEMQYFVKPGTELDWYEQWKERRMKWHESLG-----IDPSNLRFHEHDQLSHYANAAV 322

Query: 283 EVGHIFYFG----------TKYSLPMSATFKGA--------DGKDHYVQMGSYGIGAMRV 324
           ++ + F  G          T Y L     + G         + + +   +     G  R 
Sbjct: 323 DIQYDFPIGWKELEGIHSRTDYDLSRHEEYSGKKMSYYDPWEEERYTPYVVETSTGLDRT 382

Query: 325 VAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +  V+  ++  +         + +   VAP +  +  +    +   D   +I   L++  
Sbjct: 383 LFMVLCDAYYEEEVKGDTRSVLQFHPEVAPVRAGIFPLTDK-EGLPDIAREIEDDLNQH- 440

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD G  +G ++   D  G P  + V    + D  V ++ R T  ++ ++++++  
Sbjct: 441 FNVRYDDRG-SMGKRYRRQDEAGTPFCITVDFDTLDDQTVTVRDRDTMEQDRVAIDQLAT 499

Query: 437 YASHRFSN 444
           Y   + +N
Sbjct: 500 YIFDQTAN 507


>gi|218782225|ref|YP_002433543.1| seryl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|226701615|sp|B8FNA6|SYS_DESAA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218763609|gb|ACL06075.1| Seryl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 424

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 9/170 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G      +   +        G  E+  P + +      +G+   + +++ +L 
Sbjct: 162 FPLYFGDGALMERALINFMLMTHTTRHGYKEVLPPFIVNRKTMTGTGQLPKFEEDLFKL- 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+I    I     LP  +      FR E     +   G++R  
Sbjct: 221 --EGWEYFLIPTAEVPVTNIHAEEILEEEALPLYYTAFTPCFRSEAGSAGKDTRGLIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           +F   +   F   P+ S      M  +   I   LGL    +   +G IG
Sbjct: 279 QFNKVEMVKFSH-PDNSYDELEGMLQNAETILQELGLPYRVLNLCTGDIG 327


>gi|150026060|ref|YP_001296886.1| histidyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|149772601|emb|CAL44084.1| Histidine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 472

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 75/483 (15%), Positives = 152/483 (31%), Gaps = 95/483 (19%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-----LWVESGRYDSYG 90
            KG   + P        +   +R    + G   +  P+ ++++        E  R     
Sbjct: 6   PKGTRDFSPAEVAKRQYIIQKMRTHFEKFGYQPIETPSFENSETLMGKYGEEGDRLIFKI 65

Query: 91  KE--MLRLADRNDK-----AMIYGPTHEEV----------MTDIFRSHIKSY-------- 125
                     +  +       +   + E +           T+        Y        
Sbjct: 66  LNSGNFFFNKKKIELPESIQSLQLNSAETIAVNELVELNKFTNNISEKALRYDLTVPFAR 125

Query: 126 --------RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                      PF  YQIQ  +R + RP+ G  R REF   DA     T          +
Sbjct: 126 YVVQHQNEIEFPFKRYQIQPVWRAD-RPQKG--RFREFYQCDADVVGST--SLWQEVELV 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---------EFIVLADT----GET----- 219
              Y  +F  LGL  + ++  +  I   ++          +F V  D     GE      
Sbjct: 181 -QLYDSVFTDLGLNGVTIKINNRKILSGIAEVIGASNKLIDFTVALDKLDKIGEDGVKKE 239

Query: 220 --QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +   S+  ++   P  N        +  +     A       V   +       +  +
Sbjct: 240 MIEKGISETAIEKVQPLFNFAGSISEKIAKLSVLLAASTEGMKGVEELQFICDNVTDLGL 299

Query: 278 SARGIEVGHIFYFGTKY------------SLPMSA-----TFKGADG----KDHYVQMGS 316
           S+  +++      G  Y            ++ M +      +    G    K+      S
Sbjct: 300 SSAILDLDVTLARGLNYYTGAIFEVAPPKAVAMGSIGGGGRYDDLTGIFGLKNMSGVGIS 359

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +G+     +  VIE        ++P++V     ++  +    +  +    K   +L K G
Sbjct: 360 FGLD---RIYLVIEELG-----LFPETVTTTSKAIF-LNFGQEETK-YAMKAITQLRKEG 409

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V       +I  QF  A+  G  L +IVG+  + +++  +K+ ++G ++ +S +E+ +
Sbjct: 410 IKVELYPDNAKIAKQFQYAEKRGILLAIIVGNDEMQNNQFAVKNLVSGEQQKVSFDELKS 469

Query: 437 YAS 439
              
Sbjct: 470 LLQ 472


>gi|312796094|ref|YP_004029016.1| histidyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167869|emb|CBW74872.1| Histidyl-tRNA synthetase (EC 6.1.1.21) [Burkholderia rhizoxinica
           HKI 454]
          Length = 445

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 130/443 (29%), Gaps = 66/443 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   + ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPRDAGLWEFFESTVKSMLRAYGYQNIRTPIVEHTSLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFVDSLNGEQLTMRPENTAAVVRAAIEHNLLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +   S      L       
Sbjct: 131 QFHQVGVEALGFAGPDADAEIILMCQ---RLWDDLGLTGIRLEINS------LGQAQERA 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +           A  +    + L D+   
Sbjct: 182 AHRNELIAYLERHVELLDDDAKRRLYTNPLRVLDTKNPAMQDIATHAPKLIDFLGDASLA 241

Query: 274 NKRVSARGIEVGHIFYF-------GTK-YSLPMSATFKGADGKD---------------- 309
           +     R +   HI +        G   Y+L +        G                  
Sbjct: 242 HFEGVQRLLSANHIPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAGGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESS--HDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                    + +G  R++  + E        G           + +++        R+  
Sbjct: 302 GGKPAPACGWALGVERILELLREDQLVPSDDGC---------DVYVVH---QGDAARERA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             I  RL   G DV      D       SQ   AD  G    VI+G   V   +V IK  
Sbjct: 350 FVIAERLRDTGLDVILHCSADGAPASFKSQMKRADASGAAYAVILGDDEVQRDEVSIKAL 409

Query: 422 L------TGIREDMSLEEVINYA 438
                   G+++ +  E +  + 
Sbjct: 410 RGDPAGADGVQQRVPAEHLTEFL 432


>gi|255969566|gb|ACU45412.1| seryl-tRNA synthetase [Peanut witches'-broom phytoplasma]
          Length = 429

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 6/173 (3%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +   ++   + +        E+  P + +      +G+   + +++ +L + +    
Sbjct: 170 LGARLERSLINFMIDTHVSNKYSEVIPPFIVNQQSMFATGQLPKFSQDVFKL-NLDKYNW 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E    ++ R  I   ++LP  +      FR+E     +   G+ R ++F   + 
Sbjct: 229 YLNPTAEVPTINLHRQEILDIKSLPIKYVSYTTCFREEAGSSGKNTKGIWRQKQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             F + P+ S     +M      I  +L L    M   +G +G  +S  + + 
Sbjct: 289 IQF-VEPKTSYIVLEQMLKDAAVILDKLKLPYRIMLLSTGDLGFSMSKTYDIE 340


>gi|123968214|ref|YP_001009072.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166228596|sp|A2BQA4|SYH_PROMS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123198324|gb|ABM69965.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 426

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 81/437 (18%), Positives = 135/437 (30%), Gaps = 52/437 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G     P       NV  I+ E+ +R    E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLFPDQLIKWQNVEKILLEQLSRASIKEIRTPILEMTELFIRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      +  S   +   +Y +   FR E RP+ G  R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQNGISSNPIQKLWY-MGPMFRYE-RPQAG--RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---EFIV 212
                         S  S  ++      I  +LG+K + +   +     D S+    F+ 
Sbjct: 125 HQLGVEFIGHD---SVRSDVEIIALAWDILRKLGIKELNLEINTLGDTNDRSNFQKSFLK 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +T +  +           P    D  +I +   +          +   HN        
Sbjct: 182 WLETNKDSLDLDSQNRISKNPLRILDSKNIQTKKVLENAPRLFNFLSEKSHNRY------ 235

Query: 273 ENKRVSARGIEVGHI-----FYF--GTKY-----------SLPMSATFKGADGKDHYVQM 314
                  R +EV  I     F    G  Y           +L   AT  G    D  ++ 
Sbjct: 236 ---LDLKRQLEVLKIPYVENFNLVRGLDYYTHTAFEITSGALGSQATVCGGGRYDDLIKQ 292

Query: 315 GSYGIGAMRVVAAVIE--SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                      A  +E      GK +  P +     I +IN      V       +  +L
Sbjct: 293 MGGPNTPAIGFAIGLERLILLAGKELEIPRN---TDIYIIN---KGLVAESLAMDLSRKL 346

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIRED 428
                 V  D  G     QF  A+ L     +++G     + +  I+           E 
Sbjct: 347 RNYDLLVELDLSGASFSKQFKKANKLKSKSIIVIGEDEAVNGEFIIRLFDQSGNGNEEEV 406

Query: 429 MSLEEVINYASHRFSNN 445
           +S E  I    +  +NN
Sbjct: 407 ISFENDI-KLENWINNN 422


>gi|316933996|ref|YP_004108978.1| seryl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601710|gb|ADU44245.1| seryl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 496

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 80/248 (32%), Gaps = 63/248 (25%)

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F   +  
Sbjct: 295 LIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELV 354

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           S   TPE SK  + +M      +  RLGL    M   +G +G      + +         
Sbjct: 355 SI-TTPEQSKDEHERMLACAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIE-------- 405

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                 +  P   E   + +I S +                                   
Sbjct: 406 ------VWMPGQGEGGAYREISSCSV---------------------------------- 425

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-II 339
                    G   +  M A  +G DGK  +V  +   G    R + AVIE+     G I 
Sbjct: 426 --------CGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRALIAVIENYQQEDGSIA 477

Query: 340 WPDSVAPF 347
            PD + P+
Sbjct: 478 VPDVLQPY 485


>gi|327475188|gb|AEA77189.1| seryl-tRNA synthetase [Exiguobacterium sp. EPVM]
          Length = 427

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 13/201 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + + D    +G+   + ++  ++A
Sbjct: 163 FVFYKGLGARLERALINFMMDMHADEHGYSEVLPPYMVNRDAMTGTGQLPKFEEDAFKVA 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D N       PT E  +T++ R  I +   LP T+      FR E     R   G++R  
Sbjct: 223 DTN---YFLVPTAEVPVTNMHRDEIIAEDQLPITYTAYSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHE 209
           +F   +   F + PE S      +      +  RLGL    +   +  +G         E
Sbjct: 280 QFNKVELVRF-VKPEESYEQLELLTGHAEEVLKRLGLPYQVLSMCTADLGFTAAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDF 230
             + A     ++    +F DF
Sbjct: 339 VWMPAQGMYREISSCSNFEDF 359


>gi|295798138|emb|CAX68980.1| Seryl-tRNA synthetase [uncultured bacterium]
          Length = 423

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 9/174 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G      +   + +      G  EM  P L + D    +G+  +  ++M +L 
Sbjct: 161 FVLYKGQGALLERALINFMLQVHTTEHGYKEMWPPVLVNPDSMFGTGQLPNLEEDMYKLK 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+I+R  I     LP         FR E     +   G++R  
Sbjct: 221 ---NDDLYLIPTAEVPLTNIYREEILDEEVLPHKITAYSSCFRREAGSYGKDTRGLVRLH 277

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           +F   +   F + PE S +    +      I  +L L    +   +G I    S
Sbjct: 278 QFDKVELVKF-VKPEDSYNELELLLSDACDILDKLKLPYRILLLATGDISFASS 330


>gi|255534305|ref|YP_003094676.1| seryl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340501|gb|ACU06614.1| Seryl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 422

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 10/207 (4%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G   +   G +   ++     ++    G +E++ P + +      +G+      +M 
Sbjct: 162 AGAGFPVYFGKGARLQRSLVQYFLDKNTDAGYLEVNPPHVVNEASGYGTGQLPDKEGQMY 221

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
                 +  +   PT E  +T+++R  +   R LP         +R E         G+ 
Sbjct: 222 Y---APEDKLYLIPTAEVPVTNLYRDVLLEERELPIKNTAFSQCYRREAGSYGAHVRGLN 278

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSH 208
           R  +F   +       PE S  + ++M      +   L L    +R   G +G    +++
Sbjct: 279 RLHQFEKVEIVRL-EKPENSYAALDEMVEHVKTLLTELELPFRILRLCGGDMGFTSSMTY 337

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSE 235
           +F V +   E  +  S         + 
Sbjct: 338 DFEVWSAAQEKWLEVSSVSNFETFQAN 364


>gi|167464554|ref|ZP_02329643.1| seryl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 292

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G +E+  P L + D    +G+   + +++ R+ 
Sbjct: 29  FVFYKGLGARLERALLNFMMDLHSDEHGYMEILPPYLVNRDSLTGTGQLPKFAEDVFRI- 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             ++      PT E  +T+  R  I +   LP  F      FR E     R   G++R  
Sbjct: 88  --DNSDYFLIPTAEVPVTNYHRDEILTEEQLPGNFVAFSACFRSEAGAAGRDTRGLIRQH 145

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +     + PE S      +     R+   L L    +   +G +G   +     E
Sbjct: 146 QFNKVELVKL-VKPEDSYKELEILTSHAERVLQLLHLPYRVLTLCTGDLGFSSAKTYDLE 204

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +     ++    +F DF     N  F
Sbjct: 205 VWLPSSGTYREISSCSNFEDFQARRSNIRF 234


>gi|260435174|ref|ZP_05789144.1| histidyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260413048|gb|EEX06344.1| histidyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 430

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 122/420 (29%), Gaps = 62/420 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G+   LP   +    V A+ RE  + +G  E+  P L++ DL+       +   D  GKE
Sbjct: 9   GMVDLLPEALQRWQAVEAMAREHFHLSGFGEIRTPLLETTDLFCRGIGEAT---DVVGKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR------ 146
           M    DR D++    P     +      H    +     +Y     FR E RP+      
Sbjct: 66  MYSFQDRGDRSCTLRPEGTASVVRAALQHGLLSQGAQKLWYA-GPMFRYE-RPQAGRQRQ 123

Query: 147 --------FGVMRSREFLMKDAYSFDL-----------------TPEGSKHSYNKMFVSY 181
                    G  R+R  +   A ++DL                 T E  + +Y    V++
Sbjct: 124 FHQIGVEWLGAERARSDVEVIALAWDLLASLGVGGLQLELNSLGTAED-RQAYRNALVAW 182

Query: 182 LRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           L             R  + P  I    +     L +   T      +             
Sbjct: 183 LEQRSEALDPDSQTRLSTNPLRILDSKNKATQALLEEAPTLADALCEASRERFADVQRGL 242

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             +     +  +        S    E   D L     V   G   G I   G        
Sbjct: 243 TALGIPFRLNPRLVRGLDYYSHTAFEITSDQLGAQATVCGGGRYDGLIGQLG-------- 294

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  G         + +G  R++  +  ++      +     A     +  +   D 
Sbjct: 295 -------GSPTPAI--GWALGMERLLLVLEAAAQADAQGVAARLTAAAAPDVYLVNRGDA 345

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             R     +   L   G  V  D  G   G QF  AD  G P  +++G       +V +K
Sbjct: 346 AERS-ALALARDLRASGLRVELDASGSAFGKQFKRADRSGAPWALVIGEDEAERGEVRLK 404


>gi|260102998|ref|ZP_05753235.1| serine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083209|gb|EEW67329.1| serine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 457

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 185 FVYYIGAGALLERAVFNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFHEDVYTIVD 244

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 245 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSQAFRSEAGSAGRDTRGLI 304

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 305 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 363

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 364 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 407


>gi|110004380|emb|CAK98718.1| probable glycyl-trna synthetase, protein [Spiroplasma citri]
          Length = 455

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 164/476 (34%), Gaps = 78/476 (16%)

Query: 19  EIASHKLMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV- 71
           E+ +H  +   G + Q S+   G+   + + PLG +   N+  +  +         + + 
Sbjct: 7   EVVNH--LKTQGFVFQGSEIYGGLANSWDFGPLGVELERNLKNLWWQHFITKSKYNVGLD 64

Query: 72  -PTLQSADLWVESGRYDSYGKEM---------LRL----ADRNDKAMIYGPTHEEVMTDI 117
              L + ++W  SG   ++   +         +R+     D   K    G ++E++ T I
Sbjct: 65  SAILMNNNVWKASGHLGNFADPLLDCKKCKTRMRVDKLIEDNYPKLNCGGWSNEQLETFI 124

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +I         F +I  +F    +   GV+        +     L PE ++     +
Sbjct: 125 TEKNILCPNCGGHDFTEI-RQFELMFKTNQGVI------EDEKSVVYLRPETAQ----GI 173

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQVFCSKDFMDFPIPS 234
           FV++  +   L      +    G IG    +E      +  T E +    + F D     
Sbjct: 174 FVNFKNVQRSLR---KKIPFGVGQIGKSFRNEITPGNFIFRTREFEQMELEFFYDSNEKV 230

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-- 292
              ++        +              HN             + R I++ + F FG   
Sbjct: 231 NWFEYWVKEVTKFLELINLKSENYRFREHNADEL------AHYAKRTIDIEYKFPFGIGE 284

Query: 293 --------KYSL-------PMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSH--- 333
                    Y L           ++   +  +     +    +G  R++ A++  ++   
Sbjct: 285 LWGIADRGDYDLRRHSEMSKNDLSYLNQETNEKIMPHVIEPSVGVGRLMLAILYDAYHVE 344

Query: 334 --DGKG----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             D       +     +AP++I++I +            ++Y +L  V     +D+ G  
Sbjct: 345 KVDENETRIVLKLSPLLAPYQIAVIPLSKQ---LNSETYQLYEKLL-VHFQCTYDETGN- 399

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++   D +G P  V V      D KV +++R T  +E +++  + +Y +    
Sbjct: 400 IGKRYRRQDAIGTPFCVTVDFDTQEDQKVTVRNRDTMKQERVAITNLESYFTAALK 455


>gi|333029668|ref|ZP_08457729.1| glycyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332740265|gb|EGJ70747.1| glycyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 512

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 64/483 (13%), Positives = 145/483 (30%), Gaps = 90/483 (18%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +  +G +  +N+     +         + +         +W  SG  D++      L
Sbjct: 33  VYDYGQMGVELKNNIKKYWWDSMVLLHENIVGIDSAIFMHPTIWKASGHVDAFND---PL 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE-------------- 142
            D  D    Y      V   + +   K  + +     +    F +E              
Sbjct: 90  IDNKDSKKRYRADV-LVEDQLAKYDEKIDKEVKKAAKRFGDAFDEEQFRATNPRVLANQE 148

Query: 143 ---------------------------------LRPRFGVMRSREFLMKDAYSFDLTPEG 169
                                            +         R+F +  +     T E 
Sbjct: 149 KRDALHERFAKALNDNDLTELRQIIVDEEIVCPISGTRNWTEVRQFNLMFSTEMGSTAES 208

Query: 170 SKHSYNK------MFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +   Y +      +FV+Y+ +    R+ +     +     IG    +E +        + 
Sbjct: 209 AMKVYLRPETAQGIFVNYMNVQKSGRMKIPFGIAQ-----IGKAFRNEIVARQFIFRMRE 263

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWT---APYAATSDVHNEKLFDSL------- 271
           F   +   F  P    ++ ++     +                 H++    +        
Sbjct: 264 FEQMEMQFFVRPGSELEWFEMWKAQRLKWHENLGLGHENYRFHDHDKLAHYANAATDIEY 323

Query: 272 -PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                     GI     F      K+S      F     K +   +    IG  R+  ++
Sbjct: 324 LMPFGFKEVEGIHSRTDFDLSQHEKFSGKSIKYFDPELNKSYVPYVVETSIGLDRMFLSI 383

Query: 329 IE--------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +          +     +  P ++AP K++++ +   D    +   +I   L K   +  
Sbjct: 384 MAGSFCEEELENGSRVVLKLPAALAPVKLAVLPLVKKD-GLPEKAREIIDDL-KFHFNCQ 441

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+  + IG ++   D +G P  + V    + D+ V +++R T  +E +++ ++ N  + 
Sbjct: 442 YDE-KDSIGKRYRRQDAIGTPYCITVDHDSLKDNCVTLRNRDTMEQERVAIADLNNIIAD 500

Query: 441 RFS 443
           R S
Sbjct: 501 RVS 503


>gi|289577292|ref|YP_003475919.1| seryl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527005|gb|ADD01357.1| seryl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 423

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P +      + +G+   + ++  ++   
Sbjct: 164 FYKGLGARLERALINFMLDLHVEKHGYTEVFPPFMVHRRSMLGTGQLPKFEEDAFKV--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 221 YGTDYFLIPTAEVPVTNMYRDTIIDGDKLPIYHCAYSACFRQEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   P+ S     KM      +   LGL    +   +G +G   S ++ + 
Sbjct: 281 NKVELVKF-TEPDKSYEELEKMTKDAEEVLQLLGLPYRVVAICTGDLGFTASKKYDIE 337


>gi|221106336|ref|XP_002157171.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 372

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 85/298 (28%), Gaps = 28/298 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--- 96
           Y     G      +  +  +    +G   +  P     ++  E  +   + +E+ ++   
Sbjct: 63  YFLKGPGVLLQQALINLALQTLVGSGYTPIYTPFFMRKEVMQEVAQLSQFDEELYKVVGK 122

Query: 97  -ADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRF 147
            ++R+D    +      T E+ +    R    S  +LP  +  I   FR E+    R   
Sbjct: 123 GSERDDDTAVEEKYLIATSEQPIAAFHRGEWMSTSDLPKKYAGISSCFRQEVGCHGRDTR 182

Query: 148 GVMRSREFLMKDAYSFDL--TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-- 203
           G+ R  +F   + +        E  KH  ++M  +  + +  L +    +   SG +   
Sbjct: 183 GIFRVHQFEKVEQFVICSPHDNESWKH-LDEMVNNAEKFYQALNIPYRIVGIVSGALNNA 241

Query: 204 --GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               L  E          ++    +  D+        +     +N   E      A    
Sbjct: 242 AAKKLDLEAWFPGSGAFRELCSCSNCTDYQARRLLVRYGQTKKMNDKTEFCHMLNATMCA 301

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT----KYSLPM----SATFKGADGKDHY 311
                                E+   F  G     KY        +   KG   K   
Sbjct: 302 STRVICCILENNQTEEGIIVPELLRPF-MGNVEFIKYVKTAPIEGNKDVKGKSNKKKP 358


>gi|83814713|ref|YP_446435.1| glycyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83756107|gb|ABC44220.1| glycyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 512

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 69/488 (14%), Positives = 147/488 (30%), Gaps = 103/488 (21%)

Query: 30  GMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           G I Q S         Y + P+G +   NV     +         + +    +     W 
Sbjct: 50  GFIVQSSEIYGGLSATYDYGPMGVELKRNVKEKWWQSMVYQNDDIVGLDASIMMHPKTWD 109

Query: 82  ESGRYDSYGKEMLRLADRN--------------------------------DKAMIYGPT 109
            SG  +++      L D                                  ++ +     
Sbjct: 110 ASGHTEAFND---PLIDDKASGNRYRADELIENYIRALREEGEEAHAEAVRERLVEALNA 166

Query: 110 HEEV----MTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            EE+       I    I +  +  F +    Q  L F  E+ P             D  +
Sbjct: 167 GEEMNDALHAIIMDEEIPAPESGAFDWTDVRQFNLMFETEMGP------------VDGQT 214

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             L PE ++  +     +  R   RL +     +     IG    +E +        + F
Sbjct: 215 VFLRPETAQGIFVNFHNA--REPARLHVPFGVAQ-----IGKAFRNEIVARQFVFRMREF 267

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +   F  P    D+ +      +    +          +   F    +    +   +
Sbjct: 268 EQMEMQYFVKPGTELDWYEQWKERRMKWHESLG-----IDPSNLRFHEHDQLSHYANAAV 322

Query: 283 EVGHIFYFG----------TKYSLPMSATFKGA--------DGKDHYVQMGSYGIGAMRV 324
           ++ + F  G          T Y L     + G         + + +   +     G  R 
Sbjct: 323 DIQYDFPIGWKELEGIHSRTDYDLSRHEEYSGKKMSYYDPWEEERYTPYVVETSTGLDRT 382

Query: 325 VAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +  V+  ++  +         + +   VAP +  +  +    +   D   +I   L++  
Sbjct: 383 LFMVLCDAYYEEEVKGDTRSVLQFHPEVAPVRAGIFPLTDK-EGLPDIAREIEDDLNQH- 440

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD G  +G ++   D  G P  + V    + D  V ++ R T  ++ ++++++  
Sbjct: 441 FNVRYDDRG-SMGKRYRRQDEAGTPFCITVDFDTLDDQTVTVRDRDTMEQDRVAIDQLAT 499

Query: 437 YASHRFSN 444
           Y   + +N
Sbjct: 500 YIFDQTAN 507


>gi|14591389|ref|NP_143467.1| glycyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|11387128|sp|O59235|SYG_PYRHO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|3258043|dbj|BAA30726.1| 570aa long hypothetical glycyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 570

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSH--DGKGIIWPDS---VAPFKISLINIKAHDQVC 361
           G+     +     G  R    ++E+S   D  G I+      +AP +++++ + A  +  
Sbjct: 430 GEKIVPHVLEPSFGIDRPFYLLLENSLTVDEDGRIYLKIKKDMAPIEVAVLPLVAK-EPL 488

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +IY  L K G  V +D+  + IG ++   D +G P  V V ++   D  V I+ R
Sbjct: 489 TTIAYEIYRTLQKEGFIVVYDE-KDSIGKRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDR 547

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  + +EE+        
Sbjct: 548 DTREQIRVKIEELPRKLKELI 568



 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 79/231 (34%), Gaps = 68/231 (29%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  S+G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 12  QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIERKIREAFIREGFFEIETPDITP 71

Query: 77  ADLWVESGRYDSYG--------------------------------KEMLRLADRN---- 100
             +++ SG  + +                                 +EM R+   +    
Sbjct: 72  EQVFIASGHVEKFVDPVVECKKCGMRFRADHLIEEFLGIDVEGKSAEEMSRIIREHGLKC 131

Query: 101 -------------------------DKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQ 134
                                    DK     P T + +  +  R +  +   LPF  +Q
Sbjct: 132 PECGGELSDVFYFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQ 191

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           I   +R+E+ PR G++R REF   +A  F    E     +N++    L+++
Sbjct: 192 IGKAYRNEISPRQGMIRLREFTQAEAEIFFNPNETEHPHFNEVKHEKLKLY 242


>gi|300724171|ref|YP_003713488.1| histidine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297630705|emb|CBJ91370.1| histidine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 426

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 136/438 (31%), Gaps = 55/438 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP        V + ++   +  G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDCLPAETAIWQRVESTVKRVLSGYGFSEIRTPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P +          H   Y       + I   FR E RP+ G  R R+F
Sbjct: 70  FDDRNGESLTLRPENTAGCVRAGIQHGLLYNQE-QRLWYIGPMFRYE-RPQKG--RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A  F L           M +   R +  LG+    +  E   IG   +      A 
Sbjct: 126 HQLGAEVFGLQGPDIDAE---MILMTARWWRELGIAD-HVTLELNSIGSLEARANYREAL 181

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP 272
               +    K   D            + S N  ++Q            D  ++  FD L 
Sbjct: 182 VAFLEQHKEKLDEDCQRRMYTNPLRVLDSKNPEIQQLLNDAPELFDYLDAESKAHFDGLC 241

Query: 273 ENKRVSARGIEVGHIFYFGTKY---------SLPMSAT------------FKGADGKDHY 311
           +    +     +      G  Y         +  + A              +   GK   
Sbjct: 242 QILDSTGIKYRINQRLVRGLDYYNRTVFEWVTSALGAQGTICAGGRYDGLVEQLGGKAAT 301

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----HDQVCRDACEK 367
             +G + +G  R+V  V E +        PD VA  +++ + + +             EK
Sbjct: 302 PAVG-FAMGMERMVLLVQEIN--------PDFVADLRVADVYLSSFGEGSQHAALILAEK 352

Query: 368 IYARLSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           I  +L ++             G    Q   A   G  + +++G   +    + +K    G
Sbjct: 353 IRDQLPELRLM-----TNHGGGNFKKQLVRAGKHGAKVALLLGEDEIQAGNITVKDLRNG 407

Query: 425 IREDMSLEEVINYASHRF 442
            +E +  + +    S   
Sbjct: 408 EQETLPQQTIAARLSELL 425


>gi|297620081|ref|YP_003708186.1| glycyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379058|gb|ADI37213.1| glycyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 584

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 98/303 (32%), Gaps = 28/303 (9%)

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R+ L  +   +      ++         Y     R G     +           SH 
Sbjct: 301 MRFRQHLPNEMAHYASDCWDAE--------LYS---DRFGWVE-CVGVADRTDYDLKSH- 347

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFD-----DIISLNSIVEQWTAPYAATSDVHN 264
              +A +GE      +      I + + + +          +S + Q          +  
Sbjct: 348 ---MATSGEDLSVFVEYEEPKEIETFDIELNFKALGKTFKGDSKIIQKLISEMDYQKIEE 404

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                   E         E G  F   ++Y      T K  +G+     +     G  R+
Sbjct: 405 MVSGIENNEKGNKYILKAEDGKEFELTSEYLTAKKIT-KTVNGEKVIPHVIEPSYGVDRI 463

Query: 325 VAAVIESSHDGK----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
              VIE + + +     +    SVAP K  +  +   +Q+      +I   L   G    
Sbjct: 464 TYFVIEHAFNEEEDRTFMKLAPSVAPIKAGVFPLVNKEQMPI-IAREIEETLRNSGIIAE 522

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +DD G  IG ++   D +G P  + V  + +    V I+ R    ++ + +EE+  Y ++
Sbjct: 523 YDDSGA-IGRRYLRMDEVGTPFCITVDGESLDSGTVTIRERDERTQKRLKIEELGEYINN 581

Query: 441 RFS 443
              
Sbjct: 582 SLK 584



 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 63/209 (30%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESG----------- 84
            G + + PLG    +N+    R+      G  E+  PT+   ++   SG           
Sbjct: 34  AGFFDYGPLGAILKNNIVNTWRKHYIINEGFYEIEGPTINPYEVLKASGHVDNFTDPLVQ 93

Query: 85  --------RYDSYGKE----------------------------------------MLRL 96
                   R D   +E                                        M + 
Sbjct: 94  CKECNESFRADHIIEENVDIDTEGKTLDELQALITENDIKCPLCGGEFKEVDTFNLMFKT 153

Query: 97  A---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +        A +   T + +     R +      LPF   QI   +R+E+ PR GV+R R
Sbjct: 154 SIGPSGKRVAFMRPETAQGIFIQFKRINQFFRNKLPFGAVQIGKSYRNEISPRQGVIRLR 213

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           EF   +A  F    + +   + ++    L
Sbjct: 214 EFSQAEAEFFIHPDKKNYEKFERVKDMVL 242


>gi|134295842|ref|YP_001119577.1| histidyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166227953|sp|A4JEN9|SYH_BURVG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134138999|gb|ABO54742.1| histidyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 446

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 135/446 (30%), Gaps = 67/446 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      +   A ++      G   +  P ++   L+    G   D   KEM 
Sbjct: 15  KGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMY 74

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P +   +      H   Y + P   + I   FR E RP+ G  R R
Sbjct: 75  SFTDALNGENLTMRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYR 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F      +       +      M     R++  LGL  I +      I      E    
Sbjct: 131 QFHQVGVEALGFAGPDADAEIIMMCQ---RLWDDLGLTGIKLE-----INSLGLAEERA- 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   +  +        ++   + + + +           A  +    + L D    
Sbjct: 182 AHRVELIKYLEQHVDVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRA 241

Query: 274 NKRVSARGIEVGHI-FYFGTK-------YSLPMSATFKGADGKD---------------- 309
           +     R +   +I F    +       Y+L +        G                  
Sbjct: 242 HFEGLQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQL 301

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK--ISLINIKAHDQVCRDAC 365
                    + +G  R    ++E   +         +AP +  + +  +    +  R+  
Sbjct: 302 GGKPTAACGWAMGIER----ILELLKEED-------LAPEQEGVDVYVVHQG-EAAREQA 349

Query: 366 EKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
                RL   G DV +    D       SQ   AD  G    VI G + V++    +K  
Sbjct: 350 FIAAERLRDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTAGVKAL 409

Query: 421 RLTG------IREDMSLEEVINYASH 440
           R  G      +++ + +E +  +  +
Sbjct: 410 RGAGQEGEKNVQQTVPVEGLTEFLIN 435


>gi|319740183|gb|ADV60385.1| glu- + pro-tRNA synthetase [Saturnia naessigi]
          Length = 134

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +  AD ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAIQGATSHHLGQNFSRMFEIVYDDADTQEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +  ++             +   D+C+     L   G     D       
Sbjct: 74  GLVLPPRIAEIQAIVVPCGITASSTPDERKNLIDSCKAFVDMLLAGGIRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|307265411|ref|ZP_07546967.1| seryl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919525|gb|EFN49743.1| seryl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 423

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    R G  E+  P +        +G+   + ++  ++   
Sbjct: 164 FYKGLGARLERALINFMLDLHIERHGYTEVFPPFMAHRRSMFGTGQLPKFEEDAFKV--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 221 YGTDYFLIPTAEVPVTNMYRDTIIDGDKLPIYHCAYSACFRQEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   P+ S     KM      +   LGL    +   +G +G   S ++ + 
Sbjct: 281 NKVELVKF-TEPDKSYEELEKMTRDAEEVLQALGLPYRVVAICTGDLGFTASKKYDIE 337


>gi|229820268|ref|YP_002881794.1| glycyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566181|gb|ACQ80032.1| glycyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 462

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 64/493 (12%), Positives = 143/493 (29%), Gaps = 128/493 (25%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVE 82
            + + G I+  S+  + + PLG +  +N+          +    + +    +    +WV 
Sbjct: 20  FVFQAGEIYGGSRSAWDYGPLGVELKENIKRQWWRAMVTSRDDIVGLDSSVILPRPVWVA 79

Query: 83  SGRYDSYGK--------------------------------------------------- 91
           SG   ++                                                     
Sbjct: 80  SGHVGAFSDPLTECLSCHKRFREDHLIEEFEERKGRAPEGGLAEIACPNCGTRGQWTEPR 139

Query: 92  --EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              M+       + D +    +   T + +  +       + +  PF   QI   FR+E+
Sbjct: 140 DFNMMLKTYLGPVEDESGLHYLRPETAQGIFVNFANVMGAARKKPPFGIAQIGKSFRNEI 199

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            P   + R+REF            E  +  Y                             
Sbjct: 200 TPGNFIFRTREF------------EQMEMEY---------------------------FV 220

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              S E          Q +       +     + D   +    +      +      +  
Sbjct: 221 EPGSDEQWH-------QYWIDARTDWYVDLGIDRDNLRLYEHPAEKLSHYSTRTVDIEYR 273

Query: 264 NEKLFDSLPENKRVSARG-IEV-GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                    E + ++ R   ++  H  + G      +S   +G + +     +       
Sbjct: 274 FGFTGSEWGELEGIANRTDFDLKTHSEHSGRD----LSYFDQGKNERWVPYVIEPAAGLT 329

Query: 322 MRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             ++A ++E+  + +                   +AP K++++ + +           + 
Sbjct: 330 RSLMAFLVEAYAEDEAPNTKGGVDVRTVLRLDHRLAPVKVAVLPL-SRSGDLSPKARGLA 388

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L +   +V +DD G  IG ++   D +G P  V V    ++D  V ++HR +  +E +
Sbjct: 389 AELRQAW-NVDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLTDDAVTVRHRDSMQQERV 446

Query: 430 SLEEVINYASHRF 442
           +L +V  Y +   
Sbjct: 447 ALSKVRGYLAEHL 459


>gi|327393325|dbj|BAK10747.1| seryl-tRNA synthetase SerS [Pantoea ananatis AJ13355]
          Length = 416

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D ++  H  +     G+    +    G    +  GQ A     ++  + +    + G +E
Sbjct: 133 DFQVKDHVELGEAAKGLDFAAAVKLTGSRFVVMQGQIARLHRALSQFMIDLHTEQHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKS 124
             VP L +      +G+   +G+++       ++         PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHATLYGTGQLPKFGEDLFHTRPLEEESESSHYALIPTAEVPLTNLVRDEIVE 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             NLP         FR E     R   G++R  +F   +       PE S  +  ++   
Sbjct: 253 EENLPLKLTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVA-PETSMDALEELVGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   L L    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLNLPYRKVLLCTGDMGFGATKTYDLEVWLPAQNTYREISSCSNMGDF 365


>gi|217316823|gb|ACK37817.1| putative glutamyl-prolyl tRNA synthetase [Sergio mericeae]
          Length = 122

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           RGI+     + G  +S      F+  + K   YV   S+G+   R +  ++    D KG+
Sbjct: 17  RGIQGATSHHLGQNFSKMFDIVFEHPETKQKEYVYQNSWGLT-TRTIGVMVMVHGDNKGL 75

Query: 339 IWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCD 378
           + P  VA  ++ ++ +               DAC+K+   L+     
Sbjct: 76  VLPPRVACVQVIIMPVGITAKTTEQEKSSLTDACKKLADELNAGEIR 122


>gi|20092841|ref|NP_618916.1| seryl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|30173184|sp|Q8TIU3|SYS_METAC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|19918144|gb|AAM07396.1| seryl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 421

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 14/223 (6%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             +G   +  LG K    +   + +   R G +E+  P L +      +G+   + ++M 
Sbjct: 159 AGQGFTVYKGLGAKLERALINFMLDVHTRQGYLEVFPPVLINEKAMTGTGQLPKFKEDMY 218

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----PRFGVM 150
                        PT E  +T++F        NLP +       FR E         G++
Sbjct: 219 LCCADG---YYLAPTAEVPVTNLFMDEYME--NLPVSLTAYTACFRREAGKHGQDTRGII 273

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +   F + PE S     K+ +    I   L L    +   +G +G   +   
Sbjct: 274 RQHQFNKVELVKF-VKPETSYEELEKLTLDAEEILKLLKLPYRLVTLCTGDLGFSAAKTY 332

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             E  V       ++    +F +F     N  F        + 
Sbjct: 333 DIEVWVPTQEKYREISSCSNFENFQARRANIRFRTPEGPQFVH 375


>gi|317484900|ref|ZP_07943789.1| seryl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316923838|gb|EFV45035.1| seryl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 424

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 71/224 (31%), Gaps = 14/224 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G    +  G  A     +     +  +  G  E+  P + +      +G+   + +++ 
Sbjct: 158 AGSRFTVSWGWAARLERALVCFYLDFHHEQGRTEILPPLMVNRKTMQGTGQLPKFEEDLF 217

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           ++AD         PT E  +T++    I     LP  +      FR E     +   G +
Sbjct: 218 KVADW---EYYLIPTAEVPVTNLHADEILDEEALPKRYCSQTPCFRSEAGSAGKDTRGYI 274

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +       P+ S     +M  S   +  RL L    +   +G +G       
Sbjct: 275 RQHQFTKVEMVYI-THPDDSFKYLEEMRRSAETLLERLELPYRTITLCAGDMGFSACKTY 333

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  +       ++    + +DF     N  F         V 
Sbjct: 334 DVEVWLPGQRTYREISSCSNCVDFQARRANIRFRPKGGKPEWVH 377


>gi|168184974|ref|ZP_02619638.1| serine--tRNA ligase [Clostridium botulinum Bf]
 gi|182671959|gb|EDT83920.1| serine--tRNA ligase [Clostridium botulinum Bf]
          Length = 426

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V +   +    + G IE+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERAVISYFLDTHTEKHGYIEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  +     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEVLKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYDELGKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDSKAKPQYVHT 383


>gi|256751428|ref|ZP_05492306.1| seryl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749647|gb|EEU62673.1| seryl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 423

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P +        +G+   + ++  ++   
Sbjct: 164 FYKGLGARLERALINFMLDLHIEKHGYTEVFPPFMVHRRSMFGTGQLPKFEEDAFKV--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 221 YGTDYFLIPTAEVPVTNMYRDTIIDGDKLPIYHCAYSACFRQEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   P+ S     KM      +   LGL    +   +G +G   S ++ + 
Sbjct: 281 NKVELVKF-TEPDKSYEELEKMTRDAEEVLQALGLPYRVVVICTGDLGFTASKKYDIE 337


>gi|297543541|ref|YP_003675843.1| seryl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841316|gb|ADH59832.1| seryl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 423

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P +      + +G+   + ++  ++   
Sbjct: 164 FYKGLGARLERALINFMLDLHVEKHGYTEVFPPFIVHRRSMLGTGQLPKFEEDAFKV--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 221 YGTDYFLIPTAEVPVTNMYRDTIIDGDKLPIYHCAYSACFRQEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   P+ S     KM      +   LGL    +   +G +G   S ++ + 
Sbjct: 281 NKVELVKF-TEPDKSYEELEKMTKDAEEVLQLLGLPYRVVAICTGDLGFTASKKYDIE 337


>gi|167036460|ref|YP_001664038.1| seryl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167038703|ref|YP_001661688.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300913738|ref|ZP_07131055.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307723246|ref|YP_003902997.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|320114885|ref|YP_004185044.1| seryl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|238687557|sp|B0K0Z5|SYS_THEPX RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238687674|sp|B0KAI8|SYS_THEP3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166852943|gb|ABY91352.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|166855294|gb|ABY93702.1| seryl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|300890423|gb|EFK85568.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307580307|gb|ADN53706.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|319927976|gb|ADV78661.1| seryl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 423

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P +        +G+   + ++  ++   
Sbjct: 164 FYKGLGARLERALINFMLDLHIEKHGYTEVFPPFMVHRRSMFGTGQLPKFEEDAFKV--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 221 YGTDYFLIPTAEVPVTNMYRDTIIDGDKLPIYHCAYSACFRQEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   P+ S     KM      +   LGL    +   +G +G   S ++ + 
Sbjct: 281 NKVELVKF-TEPDKSYEELEKMTRDAEEVLQALGLPYRVVVICTGDLGFTASKKYDIE 337


>gi|91216110|ref|ZP_01253078.1| seryl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91185627|gb|EAS72002.1| seryl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 423

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 8/172 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    + +   ++    G  E+ VP L +      +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALISYFLDKNTEAGYNEVQVPLLVNEASGYGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +    +  +   PT E  +T+I+R  + ++++LP         FR E         G+ R
Sbjct: 223 V---GNDDLYLIPTSEVPLTNIYRDDLLNFKDLPIQLTAYTPCFRREAGSYGAHVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             +F   +  +  + P+ S    + M      I   L L    +R   G +G
Sbjct: 280 LHQFDKVELVNL-VKPDDSYQVLDTMVEHIKTILRELKLPYRILRLCGGDLG 330


>gi|329946915|ref|ZP_08294327.1| glycine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526726|gb|EGF53739.1| glycine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 464

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 143/448 (31%), Gaps = 66/448 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +   R+    + +    +   ++WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKENIKRQWWQYMVRSRDDVVGLDSSVILPREVWVASGHVQAFTDPLIECQ 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT---FYQIQLKFRD-ELRPRFGVMRSR 153
             + +        E   T   +  I+    +            + R  E +   G++++ 
Sbjct: 95  SCHKRLRE----DELQETYAAKHGIEDPSTVSLEQVACPSCGTRGRFTEPKAFSGLLKTY 150

Query: 154 EFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEF 210
              + D      L PE ++  +            +   G+         G +G    +E 
Sbjct: 151 LGPVDDESGLHYLRPETAQGIFVNFAAVMSAARKKPPFGI---------GQVGKSFRNEI 201

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P  + ++              A Y              
Sbjct: 202 TPGNFIFRTREFEQMELEFFCEPGTDEEWHQYWIDYR-----KAWYTDLGISEGNLRLYE 256

Query: 271 LPENK--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------G 307
            P  K    S R +++ + F F              T + L   A   G D         
Sbjct: 257 HPAEKLSHYSKRTVDLEYRFGFAGSEWGELEGIANRTDFDLSTHAEHSGKDLSYFDQTRS 316

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINI 354
           +     +     G  R + A +  ++                 +     +AP K +++ +
Sbjct: 317 ERWIPYVIEPSAGLTRSLMAFLVEAYTEDEAPNTKGGVDKRIVLRLDPRIAPVKAAVLPL 376

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +++     +++ ARL +   +V +DD G  +G ++   D +G P  +        D 
Sbjct: 377 SRKEELTGP-AKELAARLRRSW-NVDYDDAGA-VGRRYRRQDEVGTPFCLTYDFDSPEDG 433

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V ++ R T  +E + LE V  Y + R 
Sbjct: 434 AVTVRERDTMTQERIPLEGVERYLAERL 461


>gi|321468238|gb|EFX79224.1| hypothetical protein DAPPUDRAFT_245240 [Daphnia pulex]
          Length = 192

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 72/225 (32%), Gaps = 40/225 (17%)

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           P  G+ R R F   DA+ F +     K   N        IF   G     +R  + P   
Sbjct: 6   PLSGLTRVRRFQQDDAHIFCIM-GQIKSEINGALAFLRDIF---GFTF-QLRLSTRPEKF 60

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               E    A+   T+            P +                     A      +
Sbjct: 61  LGEIETWNHAEKELTESLNEFGDTWQLNPGDG--------------------AFYGPKID 100

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMR 323
             + D+L    + +   +E    F    +++L          G K+  V +    +G+++
Sbjct: 101 ITIMDALRRPHQCATIQLE----FQLPIRFNLSF----INEAGEKEKPVIIHRAILGSVQ 152

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            + A++   + GK   WP  ++P +  ++ +     V     +++
Sbjct: 153 HMIAILTEIYAGK---WPFWLSPRQCVVVLVGP---VFHGYAQQV 191


>gi|303253248|ref|ZP_07339397.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307248199|ref|ZP_07530227.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302647930|gb|EFL78137.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306855376|gb|EFM87551.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 423

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 138/426 (32%), Gaps = 45/426 (10%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        +   +R      G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PTESPLWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P                Y N     + +   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIERGWIYNNE-QRLWYMGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------------DLS 207
            F +           + +   R++  LG+    +  +   IG                 +
Sbjct: 131 VFGIPNPEIDAE---LIILTARLWKELGIDQ-HVSLQLNSIGSLEARANYRSALVKFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           H  ++  +  E  V      +D    +     +D   L        +        H    
Sbjct: 187 HTALMSDEEKERLVKNPLRILDTKNQALQEVLNDAPKL-LDYLDDDSREHFAHLCHLLDA 245

Query: 268 FDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
                E      RG++     +F       G++ ++     + G       H  Q   + 
Sbjct: 246 MGITYEVNPKLVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGFA 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           +G  R+V  V E +   K I  P +V    + ++       +      E+I + L ++G 
Sbjct: 306 MGLERLVLLVQEVN---KEINLPKAV---DVYVVYSGEGATLNAFQMAERIRSELPQLGV 359

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVIN 436
                  G     QF  AD +   + +++G   V    V +K   +G  +  ++  ++I 
Sbjct: 360 MTHC--SGGNFKKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVTIAQADLIA 417

Query: 437 YASHRF 442
             + RF
Sbjct: 418 ELTKRF 423


>gi|300716073|ref|YP_003740876.1| Seryl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299061909|emb|CAX59025.1| Seryl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 430

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 14/193 (7%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK----AMI 105
             ++  + +    + G +E  VP L +      +G+   +G+++       ++       
Sbjct: 174 RALSQFMLDLHTEQHGYLETYVPYLVNHASLHGTGQLPKFGEDLFHTRPLEEEASSSDYA 233

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I    +LP  F      FR E     R   G++R  +F   +  
Sbjct: 234 LIPTSEVPLTNMVRDEILEEESLPLKFTAHTPCFRSEAGAYGRDTRGLIRMHQFDKVEMV 293

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTG 217
                PE S  +  ++     ++   L L    +   +G +G         E  + A   
Sbjct: 294 HI-TRPEDSMDALEELVGHAEKVLQLLELPYRKVLLCTGDMGFGSCKTYDLEVWLPAQDT 352

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 353 YREISSCSNMGDF 365


>gi|260575191|ref|ZP_05843191.1| seryl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259022451|gb|EEW25747.1| seryl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 429

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 80/252 (31%), Gaps = 24/252 (9%)

Query: 14  NPRDA-EIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGA 66
            P++  EI +    ++ GM    +    G    L  G        +   + +   N  G 
Sbjct: 137 TPKEHFEIKA----VQPGMDFAAAAKLSGARFVLLRGAVLRVHRALGQFMLDTHINEHGL 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E   P L   +    +G    + ++  +            PT E  +T+     I    
Sbjct: 193 TETWTPVLVKDEAMFGTGNLPKFAEDSYQTT----NGWWLIPTAEVTLTNTVAGEILDDA 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP     +   FR E     +   G++R  +F   +  S   TPE S   +++M     
Sbjct: 249 QLPIRMCALTQCFRSEAGSAGKDTSGMLRQHQFEKVEMVSI-TTPEASLAEHDRMTRCAE 307

Query: 183 RIFHRLGLKSIPMRAESGPI--GGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +LGL    +   +G +  G   +H  E  +       ++       DF     N  
Sbjct: 308 AILEKLGLPYRTIVLCTGDMGFGSQKTHDLEVWLPGQNTYREISSVSICGDFQARRMNAR 367

Query: 239 FDDIISLNSIVE 250
           F         V 
Sbjct: 368 FRAQGGKPEFVH 379


>gi|256788893|ref|ZP_05527324.1| histidyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 420

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 144/432 (33%), Gaps = 38/432 (8%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  LP        V   I      +G   +  P  ++ +L+        D   
Sbjct: 4   FKAPKGTYDLLPPDSAKFLAVREAIAAPLRNSGYGYIETPGFENVELFARGVGESTDIVT 63

Query: 91  KEMLRLADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM     +    +   P T   V+  +  +++    NLP   +    ++R E RP+ G 
Sbjct: 64  KEMYVFETKGGDRLALRPETTAPVLRAVLEANLHKAGNLPVKVWYSGSQYRYE-RPQKG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIG 203
            R R F    A +              + +   + +  LGL+   +   S       P+ 
Sbjct: 122 -RYRHFSQVGAEAIGAEDPALDAE---LIILADQSYRALGLQDFRILLNSLGDQECRPVY 177

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F+   D  E  +  ++      +  +  D    ++   ++  +           
Sbjct: 178 RAALQDFLRGLDLDEETLRRAEINPLRVLDDKRPDVQKQLTEAPLLRDYLCDACKAYHEE 237

Query: 264 NEKLFDSLPENKRVSA---RGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKDH 310
             +L  +            RG++      F       G++ ++     + G     G   
Sbjct: 238 VRELITAAGVVFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPS 297

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +G + +G  R V A+     +G  +  P + + F + L       +  R        
Sbjct: 298 LPSVG-WALGVDRTVLAL---EAEGIELDIPSATSVFAVPL------GEEARRILFAKVT 347

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K G    +   G+ + +    A+  G    +++G + +++  V++K   +G +  + 
Sbjct: 348 ELRKNGVAADFSYGGKGLKAAMKAANRSGARYTLVLGERDLAEGVVQLKDMESGEQTAIG 407

Query: 431 LEEVINYASHRF 442
           + E++     R 
Sbjct: 408 VNEIVAELESRL 419


>gi|256851919|ref|ZP_05557307.1| seryl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260661820|ref|ZP_05862730.1| seryl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|282931840|ref|ZP_06337321.1| serine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297205544|ref|ZP_06922940.1| serine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256615877|gb|EEU21066.1| seryl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260547289|gb|EEX23269.1| seryl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|281304003|gb|EFA96124.1| serine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297150122|gb|EFH30419.1| serine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 435

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 13/218 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E  + G  E+  P L + D    +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVYNFFLDENTKEGYTEVIPPYLVNDDSMQGTGQFPKFTEDVYTIVD 222

Query: 99  RNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D          PT E  + + FR  I   + LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPLNLTLIPTAEVPLVNYFRGEIVDGKKLPINVTALTPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +       PE S +  +K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHQFNKVEMVKV-CKPEESWNELDKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             E  + A     ++    +  DF        + D   
Sbjct: 342 DLEVWMPAQNKYREISSCSNCTDFQARRAQIRYRDEDG 379


>gi|21220009|ref|NP_625788.1| histidyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289772779|ref|ZP_06532157.1| histidyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|32130150|sp|Q9KXP2|SYH_STRCO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|8249967|emb|CAB93388.1| histidyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289702978|gb|EFD70407.1| histidyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 425

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 144/432 (33%), Gaps = 38/432 (8%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  LP        V   I      +G   +  P  ++ +L+        D   
Sbjct: 9   FKAPKGTYDLLPPDSAKFLAVREAIAAPLRNSGYGYIETPGFENVELFARGVGESTDIVT 68

Query: 91  KEMLRLADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM     +    +   P T   V+  +  +++    NLP   +    ++R E RP+ G 
Sbjct: 69  KEMYVFETKGGDRLALRPETTAPVLRAVLEANLHKAGNLPVKVWYSGSQYRYE-RPQKG- 126

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIG 203
            R R F    A +              + +   + +  LGL+   +   S       P+ 
Sbjct: 127 -RYRHFSQVGAEAIGAEDPALDAE---LIILADQSYRALGLQDFRILLNSLGDQECRPVY 182

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                +F+   D  E  +  ++      +  +  D    ++   ++  +           
Sbjct: 183 RAALQDFLRGLDLDEETLRRAEINPLRVLDDKRPDVQKQLTEAPLLRDYLCDACKAYHEE 242

Query: 264 NEKLFDSLPENKRVSA---RGIEVG--HIFY-----FGTKYSLPMSATFKGAD---GKDH 310
             +L  +            RG++      F       G++ ++     + G     G   
Sbjct: 243 VRELITAAGVVFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPS 302

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +G + +G  R V A+     +G  +  P + + F + L       +  R        
Sbjct: 303 LPSVG-WALGVDRTVLAL---EAEGIELDIPSATSVFAVPL------GEEARRILFAKVT 352

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K G    +   G+ + +    A+  G    +++G + +++  V++K   +G +  + 
Sbjct: 353 ELRKNGVAADFSYGGKGLKAAMKAANRSGARYTLVLGERDLAEGVVQLKDMESGEQTAIG 412

Query: 431 LEEVINYASHRF 442
           + E++     R 
Sbjct: 413 VNEIVAELESRL 424


>gi|126461215|ref|YP_001042329.1| seryl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102879|gb|ABN75557.1| seryl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
          Length = 430

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 76/253 (30%), Gaps = 24/253 (9%)

Query: 14  NPRDA-EIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGA 66
            P++  EIA     ++ GM    +    G    +  G        +   + +      G 
Sbjct: 137 APKEHFEIAG----VKPGMDFATAAKLSGSRFVMLKGAVIRVHRALAQFMLDTHVTEHGL 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E   P L   +    +G+   + ++  +            PT E  +T+     I    
Sbjct: 193 TETWTPVLVKDEAMFGTGQLPKFSEDSYQTT----NGWWLIPTSEVTLTNTVSGEILDEA 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +  S   TPE S   + +M     
Sbjct: 249 QLPVRMTAHTQCFRSEAGSAGKDTSGMLRQHQFEKVEMVSI-TTPETSLAEHERMTGCAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +LGL    +   +G +G   +     E  +       ++       DF     N  
Sbjct: 308 AILQKLGLPYRTIVLCTGDMGFGATKTHDLEVWLPGQNTYREISSVSVCGDFQARRMNAR 367

Query: 239 FDDIISLNSIVEQ 251
           F            
Sbjct: 368 FRPAGGGKPEFVH 380


>gi|313125233|ref|YP_004035497.1| histidyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312291598|gb|ADQ66058.1| histidyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 431

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 128/436 (29%), Gaps = 61/436 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   + P    A   V   + +   R G  E++ P L+   ++V +SG  +   +E+  
Sbjct: 6   KGFRDFYPDEMSARRQVFDAVEDAAARYGFREIATPRLERTQMYVDKSG--EEIVEELYA 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +  +   +    S    P  +   +  +R E   +    R R
Sbjct: 64  FEDKGGREVSLTPELTPTVARMVVAKQQALS---KPIKWVSSRPFWRFEQVQQ---GRFR 117

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEFI 211
           EF   +   F  +   +           L     LGL       R     I G L   F 
Sbjct: 118 EFYQTNVDIFGSSEPEADAEILAFAADAL---TSLGLTADDFEFRVSHRDILGGLLDSFD 174

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-- 269
              DT        K              D  +S +   E      A   D   E   D  
Sbjct: 175 ADVDTRNAIRAVDKRAKVEDEEYLGLLSDAGLSYDQAREFDNLIVAGDLDAIAEFGGDDV 234

Query: 270 --------------------SLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKG--- 304
                                  +    +ARG++   G +F           A F G   
Sbjct: 235 KDAVENLRAVLAATEDFGVRQYCDISLTTARGLDYYTGVVFECFDSTGDVSRAAFGGGRY 294

Query: 305 ----AD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                D  G+         G+        ++    D    +WP+        ++ +    
Sbjct: 295 DNLIEDFGGQPTPAV----GVALGDATLQLLCERAD----VWPEEELQTDYYVLTVGD-- 344

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              R    ++   L   G  V  D      G+Q   AD +     VIVG + + + +V +
Sbjct: 345 --TRAVASRVARDLRDRGNVVEMDVADRSFGAQMGYADSINAETVVIVGEQDLENDEVTV 402

Query: 419 KHRLTGIREDMSLEEV 434
           K   TG +    + + 
Sbjct: 403 KDMDTGDQTTAPVSDF 418


>gi|19074790|ref|NP_586296.1| GLYCYL-tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74664167|sp|Q8SQZ6|SYG_ENCCU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
 gi|19069432|emb|CAD25900.1| GLYCYL-tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 579

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 133/418 (31%), Gaps = 68/418 (16%)

Query: 93  ML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGV 149
           M   ++  +  + M   P   +     F+   +   + LPF    I   +R+E+ PR G+
Sbjct: 157 MFGTQIGYKGGQTMFLRPETAQGQFLNFKKLCEYNNDKLPFASASIGKAYRNEISPRSGL 216

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-------AESGPI 202
           +R REF   +   F LT E     ++ +    L++ H    + I ++         +  +
Sbjct: 217 LRVREFDQAEIEHFVLTDEKDHPKFSTVQGIKLKLMHHDASEEITLKEAIERGIVCNETM 276

Query: 203 GGDLSHEFIVLADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           G  +    + L + G + ++   +      +        D     S         A  + 
Sbjct: 277 GYYIGRTALFLIELGIDRELLRFRQHKKDEMAHYAKGCWDAEIYTSYGWIECVGIADRAC 336

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIF-------------YFGTKYSLPM---------- 298
                  D    + R   R  E   I                  ++S+ M          
Sbjct: 337 YDLSCHEDGSKVDLRCKRRLAEPKEIEEWVLKLDKKEWGAKLRDRFSVLMETVNGLSQKY 396

Query: 299 ---SATFKGADGKDHYVQMGSYGIGAM-------------------------RVVAAVIE 330
              +    G +     V+   Y I                            R++ A+IE
Sbjct: 397 IEKNVVSIGENRNRLSVKFDEYTINIECSRVKKKVFVENVIPDVIEPSFGIGRILYALIE 456

Query: 331 SSHDGKG-----IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            S   +        +  ++AP + ++  +   D+   +    I   L+  G  V  ++  
Sbjct: 457 HSFYLREDSRPVFRFKPAIAPVQCAIGYLIHFDE-FNEHILNIKRFLTDNGLVVHVNERS 515

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             IG +++  D LG P  +     F+ D  V I+ R +  +  + +E+  +       
Sbjct: 516 CSIGRKYSSCDELGIPFFITFDPDFLKDRMVTIRERDSMQQIRVDVEKCPSIVLEYIR 573



 Score = 37.2 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 24 KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
          +++ +   I Q +       G+Y   P G     N+ ++ R+        +E+   T+  
Sbjct: 11 QILKKRFFITQSAYIYGGVSGLYDLGPPGLSIKTNILSLWRKHFVLEEDMLEIETTTMLP 70

Query: 77 ADLWVESGRYDSYGK 91
           D+   SG  D +  
Sbjct: 71 HDVLKASGHVDKFCD 85


>gi|315122209|ref|YP_004062698.1| seryl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495611|gb|ADR52210.1| seryl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 432

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 10/161 (6%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P L   +    +G+   +  +M    D         PT
Sbjct: 176 RALGQFMLDLHTSEHGYTEVSAPLLVRDEAMYGTGQLPKFANDMFCTTD----GRWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T+IF + I  +  LP     +   FR E     R   G++R  +F   +  S   
Sbjct: 232 SEVSLTNIFSNEIIDFNLLPLRLVALAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITK 291

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             E     + +M     ++  +L L    +   SG +G   
Sbjct: 292 EEESHIE-HERMLSCAEKVLKKLDLHYRIVSLCSGDLGFSA 331


>gi|116753590|ref|YP_842708.1| glycyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121693195|sp|A0B5U4|SYG_METTP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|116665041|gb|ABK14068.1| glycyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 577

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHD 358
           G+     +     G  R++  V+E S+  +         + +   ++P  ++++ +   D
Sbjct: 421 GEYVVPHVIEPSFGIDRILYTVLEHSYHEEPVEDEMRVVLRFLPGISPIDVAILPLMDKD 480

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           ++  +   +I+    + G    +D  G  IG ++   D +G P  + V  + + D  V +
Sbjct: 481 ELV-EPARRIFDEFRRCGMLAEFDTSG-SIGRRYRRNDEIGTPYCITVDYQTLEDGTVTV 538

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  +  +  ++      S
Sbjct: 539 RDRDTMQQIRIEADRAVDIIRDLMS 563



 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 62/214 (28%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYG---- 90
           + G Y + PLG +    +  I R       G  E+  PT+   +++  SG    +     
Sbjct: 27  AAGFYDYGPLGARLKRRIEDIWRRFFVIGEGFAEIECPTIGIEEVFRASGHLSGFSDPLT 86

Query: 91  ---------------------------KEMLRLADRND---------------------- 101
                                      +E+ R+   ND                      
Sbjct: 87  ECKECKEIYRADHLIKHIVEVPDALSAEEIYRMIKENDITCPECGGELSEVYEFNLMFRT 146

Query: 102 -------KAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSR 153
                        P   + M   F+  ++ YR+ LPF   QI   +R+E+ PR GV+R R
Sbjct: 147 AIGPGNRHPGYLRPETAQGMFINFQRLLRYYRDSLPFGAVQIGRSYRNEISPRQGVIRLR 206

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           EF   +A  F          ++++    LR++ R
Sbjct: 207 EFSQAEAEVFIDPRNKQHPRFSEVKDLRLRLYSR 240


>gi|328881157|emb|CCA54396.1| Histidyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 420

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 133/441 (30%), Gaps = 54/441 (12%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYG 90
            +  KG Y  +P        V   I      +G   +  P  +  +L+        D   
Sbjct: 4   FKAPKGTYDLIPPFSAQYLAVRDAIAAPLRTSGYGYVETPGFEDVNLFARGVGESTDIVS 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRDELRPRFG 148
           KEM     +    +   P                ++   LP   +     +R E RP+ G
Sbjct: 64  KEMYAFETKGGDKLALRPEG-TASVLRAALEASLHKQGNLPVKLWYSGSYYRYE-RPQKG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPI 202
             R R F    A +              + +   + +  LGL++  +   S       P+
Sbjct: 122 --RYRHFSQVGAEAIGAEDPALDAE---LIILADQAYRSLGLRNFRILLNSLGDKECRPV 176

Query: 203 ----------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                     G DL  +     +    +V   K               D +  ++     
Sbjct: 177 YREALQGFLRGLDLDDDTRRRIEINPLRVLDDKREAVQKQLVGAPLLRDYL-CDACKAYH 235

Query: 253 TAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGAD---G 307
               A  +        D+         +    E  H    G++ ++     + G     G
Sbjct: 236 EEVRALITSAGVVFEDDAKLVRGLDYYTRTTFEFVHDG-LGSQSAVGGGGRYDGLSEMIG 294

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +G + +G  R V A+     +G  +  P + + F + L          R     
Sbjct: 295 GPALPSVG-WALGVDRTVLAL---EAEGIELDIPAATSVFAVPL------GDEARRVLFG 344

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   L K G    +       G++        A+  G    ++ G + +++  V++K   
Sbjct: 345 VVTELRKAGVATDF-----SFGAKGLKGHMKNANRSGARYAIVAGERDLAEGVVQLKDME 399

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +G ++ ++L+ ++     R +
Sbjct: 400 SGEQQAVALDGLVEAVRTRLA 420


>gi|77462339|ref|YP_351843.1| seryl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|77386757|gb|ABA77942.1| seryl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
          Length = 430

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 76/253 (30%), Gaps = 24/253 (9%)

Query: 14  NPRDA-EIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGA 66
            P++  EIA     ++ GM    +    G    +  G        +   + +      G 
Sbjct: 137 APKEHFEIAG----VKPGMDFATAAKLSGSRFVMLKGAVIRVHRALAQFMLDTHVTEHGL 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E   P L   +    +G+   + ++  +            PT E  +T+     I    
Sbjct: 193 TETWTPVLVKDEAMFGTGQLPKFSEDSYQTT----NGWWLIPTSEVTLTNSVAGEILDEA 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +  S   TPE S   + +M     
Sbjct: 249 QLPIRMTAHTQCFRSEAGSAGKDTSGMLRQHQFEKVEMVSI-TTPETSLAEHERMTGCAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +LGL    +   +G +G   +     E  +       ++       DF     N  
Sbjct: 308 AILQKLGLPYRTIVLCTGDMGFGATKTHDLEVWLPGQNTYREISSVSVCGDFQARRMNAR 367

Query: 239 FDDIISLNSIVEQ 251
           F            
Sbjct: 368 FRPAGGGKPEFVH 380


>gi|332560222|ref|ZP_08414544.1| seryl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
 gi|332277934|gb|EGJ23249.1| seryl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
          Length = 430

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 76/253 (30%), Gaps = 24/253 (9%)

Query: 14  NPRDA-EIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGA 66
            P++  EIA     ++ GM    +    G    +  G        +   + +      G 
Sbjct: 137 APKEHFEIAG----VKPGMDFATAAKLSGSRFVMLKGAVIRVHRALAQFMLDTHVTEHGL 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E   P L   +    +G+   + ++  +            PT E  +T+     I    
Sbjct: 193 TETWTPVLVKDEAMFGTGQLPKFSEDSYQTT----NGWWLIPTSEVTLTNSVAGEILDEA 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +  S   TPE S   + +M     
Sbjct: 249 QLPIRMTAHTQCFRSEAGSAGKDTSGMLRQHQFEKVEMVSI-TTPETSLAEHERMTGCAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +LGL    +   +G +G   +     E  +       ++       DF     N  
Sbjct: 308 AILQKLGLPYRTIVLCTGDMGFGATKTHDLEVWLPGQNTYREISSVSVCGDFQARRMNAR 367

Query: 239 FDDIISLNSIVEQ 251
           F            
Sbjct: 368 FRPAGGGKPEFVH 380


>gi|319740185|gb|ADV60386.1| glu- + pro-tRNA synthetase [Carthaea saturnioides]
          Length = 134

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R ++     + G  +S      +  A+  + +YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAVQGATSHHLGQNFSKMFEIVYDDAETHEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             +   D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRVAEIQAIVVPCGITASSSAEERKTLIDSCKALVNDLVAAGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|262305739|gb|ACY45462.1| glu- + pro-tRNA synthetase [Eurypauropus spinosus]
          Length = 134

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     +    +S      F     G+  +V   S+GI   R +  V+    D +
Sbjct: 15  SGRGIQGATSHHLAQNFSKMFEIVFDHPESGEKSFVFQNSWGIT-TRTIGVVVMVHGDDQ 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  ++ +I             Q   + C +    L+  G     D       
Sbjct: 74  GLVLPPKLASIQVVIIPCGITSSLSDVEKQSILNKCSEQANLLNGQGIRCKCDLRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|28199204|ref|NP_779518.1| seryl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182681934|ref|YP_001830094.1| seryl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130164|sp|Q87BX8|SYS_XYLFT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238691047|sp|B2I631|SYS_XYLF2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|28057310|gb|AAO29167.1| seryl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632044|gb|ACB92820.1| seryl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578190|gb|ADN62159.1| seryl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 426

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E++VP + +AD    +G+   + ++M       +       T E  +T++ R+ I
Sbjct: 188 QHGYEEVNVPIIVNADSLHGTGQLPKFEEDMFSTQ-LGEHRRYLISTSEISLTNLVRNEI 246

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                LP       L FR E     R   G++R  +F   +  S    P+ S+  +++M 
Sbjct: 247 IEADRLPLRMVAHSLCFRSEAGSGGRDTRGMIRQHQFEKVELVSV-CKPQDSEGEHHRMT 305

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
                +   LGL    +   +G +G   +     E  + +     ++    +  DF
Sbjct: 306 RCAETVLEMLGLPYRKILLCTGDMGFAATKTYDLEVWLPSQGMYREISSCSNCGDF 361


>gi|221638196|ref|YP_002524458.1| seryl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|221158977|gb|ACL99956.1| Seryl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 430

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 76/253 (30%), Gaps = 24/253 (9%)

Query: 14  NPRDA-EIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGA 66
            P++  EIA     ++ GM    +    G    +  G        +   + +      G 
Sbjct: 137 APKEHFEIAG----VKPGMDFATAAKISGSRFVMLKGAVIRVHRALAQFMLDTHVTEHGL 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E   P L   +    +G+   + ++  +            PT E  +T+     I    
Sbjct: 193 TETWTPVLVKDEAMFGTGQLPKFSEDSYQTT----NGWWLIPTSEVTLTNSVAGEILDEA 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +  S   TPE S   + +M     
Sbjct: 249 QLPIRMTAHTQCFRSEAGSAGKDTSGMLRQHQFEKVEMVSI-TTPETSLAEHERMTGCAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +LGL    +   +G +G   +     E  +       ++       DF     N  
Sbjct: 308 AILQKLGLPYRTIVLCTGDMGFGATKTHDLEVWLPGQNTYREISSVSVCGDFQARRMNAR 367

Query: 239 FDDIISLNSIVEQ 251
           F            
Sbjct: 368 FRPAGGGKPEFVH 380


>gi|291616897|ref|YP_003519639.1| SerS [Pantoea ananatis LMG 20103]
 gi|291151927|gb|ADD76511.1| SerS [Pantoea ananatis LMG 20103]
          Length = 430

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D ++  H  +     G+    +    G    +  GQ A     ++  + +    + G +E
Sbjct: 133 DFQVKDHVELGEAAKGLDFAAAVKLTGSRFVVMQGQIARLHRALSQFMIDLHTEQHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKS 124
             VP L +      +G+   +G+++       ++         PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHATLYGTGQLPKFGEDLFHTRPLEEESESSHYALIPTAEVPLTNLVRDEIVE 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             NLP         FR E     R   G++R  +F   +       PE S  +  ++   
Sbjct: 253 EENLPLKLTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVA-PETSMDALEELVGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   L L    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLNLPYRKVLLCTGDMGFGATKTYDLEVWLPAQNTYREISSCSNMGDF 365


>gi|224178769|ref|XP_002199495.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 333

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH 172
            + +F    +S+R LP       +  R+EL     G+ R R F   DA+ F  T E  + 
Sbjct: 232 FSLMFAHRPRSWRELPLRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIF-CTMEQIEE 290

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                      ++   G     +   + P       E    A+ 
Sbjct: 291 EIKDCLDFLKSVYAVFGFTF-QLHLSTRPENYLGDLEIWDHAEK 333


>gi|34496830|ref|NP_901045.1| seryl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|46577183|sp|Q7NY99|SYS_CHRVO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|34102685|gb|AAQ59050.1| seryl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 427

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 65/216 (30%), Gaps = 13/216 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--- 102
            +    +   +        G  E   P + +    + +G+   +  +M ++    D+   
Sbjct: 169 ARLHRAIAQFMLNTHTGSHGYQEHYTPYIVNDTALLGTGQLPKFADDMFKVTRGGDESAV 228

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E  +T+     I     LP         FR E     R   G++R  +F   
Sbjct: 229 PQYLISTSEVTLTNTVADTILQESELPKKMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKV 288

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       PE S  +  +M      I   L L    +   +G +G   +     E  + A
Sbjct: 289 EMVRV-EKPEHSYAALEEMVGHAENILKALELPYRVITLCTGDMGFGSAKTYDLEVWLPA 347

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                ++    +   F        + D    N +V 
Sbjct: 348 QNTYREISSCSNCEAFQARRMKARYKDENGKNQLVH 383


>gi|256544610|ref|ZP_05471982.1| histidine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256399499|gb|EEU13104.1| histidine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 432

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 133/434 (30%), Gaps = 43/434 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q A D +  II E       + +  P ++  D+    G  ++  K++  +
Sbjct: 10  AGVMELLPEDQLAFDYIKNIIEETFLSYQFLPIDTPAIEKNDILFAKGGGET-EKQIFGI 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D + K M        V    + S   S  N PF  YQI   +R E R + G  R +EF 
Sbjct: 69  -DSSKKDMSLR-FDLTVPLARYVSEHFSDLNFPFKRYQIAKVYRGE-RNQKG--RYKEFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------------- 201
             D            +      V Y  IF +L    I     +                 
Sbjct: 124 QCDIDIIGNNSLSIHNDALLPKVIY-EIFQKLDFNGIKFHINNRKLLNGFFESLEISDKE 182

Query: 202 -----------IGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                      IG + + E +V     E                   T  + +   ++  
Sbjct: 183 EVLRTIDKKAKIGEENTKELLVEICGEEKADKLMELINNKRENKELLTYLESLNLNDNYK 242

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-----VGHIFYFGTKYSLPMSATFKG 304
                       +    + D          RG++     V   F  G +    + +  + 
Sbjct: 243 IGLNELKEVYDYMIKFGIDDDSIMIDLSITRGLDYYTSTVYETFLDGYESIGSVCSGGRY 302

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +   ++ +    G+G    +  +        G++           +I +   D+     
Sbjct: 303 ENLAGNFSKQNLPGVGLSIGLTRLFYQ-FQQLGLVEKYKTKFTDCLVIPM---DEKLNFY 358

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              I  +L + G  V       +   +   AD +G    +I+G +   +  V +K+   G
Sbjct: 359 AIDIANKLKEQGLKVDIYLEDGKFKKKINYADKIGVKKVLIIGQEEYENKMVSVKNMEDG 418

Query: 425 IREDMSLEEVINYA 438
            +  + +EE+  Y 
Sbjct: 419 KQVSVKVEEIREYL 432


>gi|229179608|ref|ZP_04306959.1| Histidyl-tRNA synthetase 1 [Bacillus cereus 172560W]
 gi|228603811|gb|EEK61281.1| Histidyl-tRNA synthetase 1 [Bacillus cereus 172560W]
          Length = 425

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 144/444 (32%), Gaps = 67/444 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +                +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRELALRYDLTIPFAKFVAMNPNLR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMSMAF-DLFRTLNLEITIQYNNRKLLNGILQAINIPTEL 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +++ I+  D  E ++       D      + +  D I    +              +N+ 
Sbjct: 179 TNDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNQL 237

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 238 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGR 297

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+     + A +               +   + +I + 
Sbjct: 298 YDNIIGAFRGDSMNYPTVGISFGLDV---IYAALSQKETIS--------STADLFIIPLG 346

Query: 356 AHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              Q     C +I  +L       V  +  G ++      A+    P  +IVG + +S +
Sbjct: 347 TELQ-----CLQIAQQLRSTTSLKVELELAGRKLKRALNYANKENIPYVLIVGEEELSTN 401

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
            V +++   G    + +  + +Y 
Sbjct: 402 TVVLRNMKEGSEMKVPISSLSSYL 425


>gi|255654096|ref|ZP_05399505.1| seryl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296452479|ref|ZP_06894178.1| serine--tRNA ligase [Clostridium difficile NAP08]
 gi|296878247|ref|ZP_06902257.1| serine--tRNA ligase [Clostridium difficile NAP07]
 gi|296258685|gb|EFH05581.1| serine--tRNA ligase [Clostridium difficile NAP08]
 gi|296430755|gb|EFH16592.1| serine--tRNA ligase [Clostridium difficile NAP07]
          Length = 423

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 11/188 (5%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +   ++          + G  E+  P + + + ++ +G+ 
Sbjct: 154 RAGKI--TGSRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M ++           PT E  +T+I  + I     LP  +      FR E    
Sbjct: 212 PKFEEDMFKI---EGLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F + PE S +    +      +   LGL    ++  +G +
Sbjct: 269 GRDTRGLVRQHQFNKVELVKF-VKPEDSYNELESLTHDAETMLQMLGLPYRVVKICTGDL 327

Query: 203 GGDLSHEF 210
           G   + ++
Sbjct: 328 GFTAAFKY 335


>gi|254973664|ref|ZP_05270136.1| seryl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091055|ref|ZP_05320533.1| seryl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255312709|ref|ZP_05354292.1| seryl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515469|ref|ZP_05383145.1| seryl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255648561|ref|ZP_05395463.1| seryl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|260681783|ref|YP_003213068.1| seryl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685380|ref|YP_003216513.1| seryl-tRNA synthetase [Clostridium difficile R20291]
 gi|306518690|ref|ZP_07405037.1| seryl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|260207946|emb|CBA60065.1| seryl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211396|emb|CBE01468.1| seryl-tRNA synthetase [Clostridium difficile R20291]
          Length = 423

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 11/188 (5%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +   ++          + G  E+  P + + + ++ +G+ 
Sbjct: 154 RAGKI--TGSRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M ++           PT E  +T+I  + I     LP  +      FR E    
Sbjct: 212 PKFEEDMFKI---EGLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F + PE S +    +      +   LGL    ++  +G +
Sbjct: 269 GRDTRGLVRQHQFNKVELVKF-VKPEDSYNELESLTHDAETMLQMLGLPYRVVKICTGDL 327

Query: 203 GGDLSHEF 210
           G   + ++
Sbjct: 328 GFTAAFKY 335


>gi|315038965|ref|YP_004032533.1| seryl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|325957391|ref|YP_004292803.1| seryl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|312277098|gb|ADQ59738.1| seryl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|325333956|gb|ADZ07864.1| seryl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327184099|gb|AEA32546.1| seryl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 435

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  + G  E+  P L +      +G++  + +++  + D
Sbjct: 163 FVYYIGAGALLERAVFNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPKFHEDVYTIVD 222

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHGDKLPINVTALSPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 342 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 385


>gi|288958831|ref|YP_003449172.1| histidyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911139|dbj|BAI72628.1| histidyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 449

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 136/454 (29%), Gaps = 56/454 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +   G    LP  Q A   +   IR    R G + +  P  ++ D L  +SG      K+
Sbjct: 7   RTPPGTMELLPRQQVAFQRMLDTIRRGYERFGFVPVETPVFETVDTLLTKSG--GETEKQ 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDI-----FRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +  +           P              + +  +     PF  YQIQ  +R E R + 
Sbjct: 65  VYFVQSTGAIQQGNKPELALRFDLTVPLARYVAEHERDLAFPFRRYQIQRVYRGE-RAQR 123

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS-YLRIFHRLGLKSIPMRAESGPIGGDL 206
           G  R REF   D         G    Y+    +    +F  L      +   +  I   L
Sbjct: 124 G--RFREFYQCDIDVIGKD--GLSAHYDAEIPAVIHHVFSELDFGGFTINVNNRKILLGL 179

Query: 207 SH---------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL------ 245
                            E   L   G+ +V  S   +     + +T    I         
Sbjct: 180 LDGLGVADADTRVLVLREIDKLDKIGQDKVRASLLGLGVTGQAADTILSLIDMKGTNAET 239

Query: 246 -------NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                  +     +       + V        +PE        I  G  +Y GT Y   +
Sbjct: 240 LAALGALDIENALFREGVGELTTVIEGLNAFQVPEGTVRINLAIARGLDYYTGTVYETFL 299

Query: 299 SATF---------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           +            +  +   HY +    G+G       +        G+I     AP   
Sbjct: 300 NDHPGIGSVCSGGRYENLASHYTKSKLPGVGISIGATRLFYQL-MEAGLI--KDAAPT-- 354

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           + I +   D        ++ + L   G +      G +I  Q   AD  G P+ +++GS 
Sbjct: 355 AQILVTQMDPALSADYFRMASELRAAGINTEIQLDGGKIAKQMKYADRAGIPVVLLMGSD 414

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +     +KH + G + ++ L E+   A     
Sbjct: 415 EKARGTATLKHLVKGEQVEVPLAELAARAKALLE 448


>gi|269986881|gb|EEZ93158.1| Glycine--tRNA ligase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 488

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/473 (14%), Positives = 141/473 (29%), Gaps = 106/473 (22%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG------------ 84
            G + + P+G + L+N+    R+       +E+S   +    +   SG            
Sbjct: 33  SGFWDYGPIGVRILNNLLEQWRQTVYSMNGLEISGSVVLPKIVLQASGHEENFFDMEIKC 92

Query: 85  -------RYDSYGKE-----------------------------------------MLRL 96
                  R D   +E                                         M  L
Sbjct: 93  KNCGAVYRVDKLLEEKDSSKNFEGLTDEQYFDYIKQYNIKCSKCGGELGEIKKFGTMFSL 152

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
               D      P   + +   F+   + Y +  P    Q+   FR+E+ PR  ++R REF
Sbjct: 153 KVGEDVQAYLRPEACQSIFLDFKRIFEVYGKKFPMVIAQVGKAFRNEISPRNTLLRQREF 212

Query: 156 LMKDAYS------FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
              D         F+L  +     Y+K   S  +I  +  L    +++     G     E
Sbjct: 213 YQNDIEIFFTEDNFNLDNDYEIKIYDKEDKSIDKISIKDALSKGIIKSNVTAYGISKIQE 272

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F++     + ++   K + D    S+ +   +I   +S               H+   ++
Sbjct: 273 FLLRVGFKDEEIRYRKLYEDKAFYSKESFDIEIKKQDS---WVELVACNNRGEHDLLSYE 329

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                       I                              Q+    +G  R+   ++
Sbjct: 330 KYGAKGLRIEGNI-----------------------------PQIFEISMGTDRLFYLLL 360

Query: 330 -ESSHDGKGIIW---PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             S        W     +V+P+K ++  + + D +   A     + + K      + + G
Sbjct: 361 FSSFRKDDQRSWFSMNSAVSPYKAAIFPLVSKDNLDVKAKAMFESSMHKNNI--LYSETG 418

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             IG ++  A+ +G  +   V    V D  + ++   +  +  +S   +  + 
Sbjct: 419 -SIGKRYRRAEEVGIKIAFTVDYDTVEDGTITVRESDSMKQFRISSNNLDRFI 470


>gi|229060917|ref|ZP_04198272.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH603]
 gi|228718564|gb|EEL70196.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH603]
          Length = 431

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 137/448 (30%), Gaps = 79/448 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEISKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LKDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               +S  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLEVTIQYNNRKLLNGILQSINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D        +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLERGITVEMADTICNTVLSCLKLPIADFKDTFNNTL 238

Query: 267 LFDS----LPENKRVSARGIEVGHIF----------YFGTKYSLPMSATFKGA------- 305
           + D         + + A GI    IF          Y GT Y + +      +       
Sbjct: 239 VADGVEELQQLQQYLLALGINENTIFNPFLARGLTMYTGTVYEIFLKDGTITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+     +   +             + +   + +I + 
Sbjct: 299 YDNIIGAFRGDNMNYPTVGISFGLDV---IYTALSQKAT--------TSSTADLFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 348 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 396

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + +S   V +++   G    + L  + N
Sbjct: 397 EELSTETVVLRNMKEGTEVKIPLSSLEN 424


>gi|126697580|ref|YP_001086477.1| seryl-tRNA synthetase [Clostridium difficile 630]
 gi|255099171|ref|ZP_05328148.1| seryl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255304951|ref|ZP_05349125.1| seryl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|115249017|emb|CAJ66828.1| Seryl-tRNA synthetase 1 [Clostridium difficile]
          Length = 423

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 11/188 (5%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +   ++          + G  E+  P + + + ++ +G+ 
Sbjct: 154 RAGKI--TGSRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M ++           PT E  +T+I  + I     LP  +      FR E    
Sbjct: 212 PKFEEDMFKI---EGLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F + PE S +    +      +   LGL    ++  +G +
Sbjct: 269 GRDTRGLVRQHQFNKVELVKF-VKPEDSYNELESLTHDAETMLQMLGLPYRVVKICTGDL 327

Query: 203 GGDLSHEF 210
           G   + ++
Sbjct: 328 GFTAAFKY 335


>gi|222054291|ref|YP_002536653.1| seryl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|254783028|sp|B9M3Q9|SYS_GEOSF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|221563580|gb|ACM19552.1| seryl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 422

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +        +EM  P + + +    +G+   +  ++  L + +   
Sbjct: 167 LGARLERALVNFMLDLHTGRHNYLEMLPPFMVNRESMTGTGQLPKFEDDLFHLGEVD--- 223

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+I R  I     LP  +      FR E     +   G++R  +F   +
Sbjct: 224 YFLIPTAEVPVTNIHRGEILKGSELPLCYTAYTPCFRKEAGSYGKDTRGLIRQHQFNKVE 283

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              F + P  S    +K+  +   +   L L    +   +G IG   +  F + 
Sbjct: 284 LVKF-VHPGHSYAELDKLLDNAEEVLRLLKLPYRVVELCTGDIGFSAARTFDIE 336


>gi|315604760|ref|ZP_07879823.1| glycyl-tRNA synthetase beta subunit [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313772|gb|EFU61826.1| glycyl-tRNA synthetase beta subunit [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 475

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/447 (15%), Positives = 144/447 (32%), Gaps = 65/447 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+         R  A  + +    +   ++WV SG   ++   ++   
Sbjct: 48  WDYGPLGVELKENIKRAWWNYMVRRRADVVGLDSSVILPREVWVASGHVKAFTDPLIECL 107

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD------ELRPRFGVMR 151
           + + ++       E           K       T   +            E R   G+++
Sbjct: 108 NCHKRSREDQLIEELA-------DKKGVEESSLTLADVACPTCGVRGQWTEPRAFSGLLK 160

Query: 152 SREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +    + D      L PE ++     +FV+Y  +   +           G IG    +E 
Sbjct: 161 TYLGPVDDEAGLHYLRPETAQ----GIFVNYANV---MNAARKKPPFGIGQIGKSFRNEI 213

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   T+ F   +   F  P  + ++                    +    E     
Sbjct: 214 TPGNFIFRTREFEQMELEFFCEPGTDEEWHQYWIDYRKAWYVDLGIDPENLREYEH---P 270

Query: 271 LPENKRVSARGIEVGHIFYFG-------------TKYSLPMS-------ATFKGADGKDH 310
             +    S R +++ + F F              T Y L +          +     K+ 
Sbjct: 271 QEKLSHYSKRTVDLEYRFGFQGGQWGELEGIANRTDYDLTVHSEASGAKLDYFDPSTKER 330

Query: 311 Y-VQMGSYGIGAMR-VVAAVIESSHDGKGII------------WPDSVAPFKISLINIKA 356
           +   +     G  R ++A +IE+ H+ +                   +AP K +++ +  
Sbjct: 331 WTPYVIEPSAGLTRSLMAFLIEAYHEDEAPNAKGGVDKRVVLKLDPRLAPVKAAVLPLSR 390

Query: 357 HDQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             ++     +++  +L  +   D  +DD G  +G ++   D +G P  +      V D  
Sbjct: 391 KPELTGP-AQELADQLRGLWNID--YDDAGA-VGRRYRRQDEIGTPYCITYDFDSVEDRA 446

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V I+ R +  +  + LE V +Y   R 
Sbjct: 447 VTIRERDSMQQVRIPLEGVKSYLVERL 473


>gi|312622837|ref|YP_004024450.1| seryl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203304|gb|ADQ46631.1| seryl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 420

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +    + G  E+  P L      + +G+   + ++  +  D 
Sbjct: 164 FYRGLGARLERALINFMLDLHIEKHGYTELFPPFLVVRKSMIGTGQLPKFEEDAFKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I    +LP  +      FR E     +   G++R  +F
Sbjct: 223 ---DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +   F   PE S     K+      +   LGL    +   SG +G   +  + + 
Sbjct: 280 NKVELVKF-TKPEDSYDELEKLTADAEDVLKELGLPYRVVLLCSGDLGFSSAKTYDIE 336


>gi|302528819|ref|ZP_07281161.1| glycyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302437714|gb|EFL09530.1| glycyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 468

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 71/463 (15%), Positives = 142/463 (30%), Gaps = 96/463 (20%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGK------ 91
           + + PLG +  DN+     +   Q+R   + +    +    +WV SG  + +        
Sbjct: 39  WDYGPLGVELKDNIKRQWWKTVVQSREDVVGIDSSVILPRQVWVASGHVNVFTDPLIECL 98

Query: 92  ------------EML-----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
                       E       +    +D + +  P          R      R+       
Sbjct: 99  SCHKRFRADQLAEDFEARTGKTTTEDDLSEVPCPNCGT------RGKYTEPRDFNMMLKT 152

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                  E     G+   R                   +   +FV++L +          
Sbjct: 153 HLGPVETE----EGLAYLR-----------------PETAQGIFVNFLNVQKA---SRKK 188

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                G IG    +E         T+ F   +   F  P ++  +               
Sbjct: 189 PPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGDDEQWHQYWIDARTDWYKDL 248

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--------------TKYSLPMSA 300
                +  H E   +   +    + R +++ + F F               T + L   +
Sbjct: 249 GIKPENLRHFEHPKE---KLSHYAKRTVDIEYRFEFNAGQEWGELEGIANRTDFDLTTHS 305

Query: 301 TFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------II 339
              G D        G+ +   +     G  R + A +  ++D +              + 
Sbjct: 306 NHSGVDLSFFDQASGQRYRPFVIEPAAGVGRSMMAFLIDAYDEEEVPNAKGGTDKRTVLH 365

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +APFK +++ + + +         + ARL K   +V +DD    IG ++   D +G
Sbjct: 366 LDPRLAPFKAAVLPL-SRNADLSPKARDLAARLRKHW-NVDFDDAQA-IGRRYRRQDEIG 422

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            P  V V    + D  V I+ R +  +E +S+++V +Y + R 
Sbjct: 423 TPYCVTVDFDTLEDDAVTIRERDSMKQERISIDQVESYLAGRL 465


>gi|124026953|ref|YP_001012273.1| glycyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
 gi|123977647|gb|ABM79928.1| glycyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
          Length = 593

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSH---DGKGII-WPDSVAPFKISLINIKAHDQVCR 362
           GK     +     G  R++   ++ +H   DG+ I+  P  +AP ++++  +   D+   
Sbjct: 436 GKRFLPHVVEPSFGVERLLLVTLDYAHRERDGRTILSLPRYLAPIEVAVFPLT-RDEKLV 494

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++++  +   G    +DD    IG ++A  D +G P+ V V  + + D+ V ++ R 
Sbjct: 495 AKAKEVFRIVLDAGFYPVYDD-DGSIGKRYARVDEIGVPVAVTVDYQTLEDNTVTLRDRD 553

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  +S++++++      +
Sbjct: 554 TWKQVRVSIDKLVDALRRFLN 574



 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 109/359 (30%), Gaps = 82/359 (22%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGA---IEMSVPTLQSADLWVESGRYDSYG--- 90
            G Y   PLG +  + +  + R+   R  A   +E+  P +  + ++  SG  + +    
Sbjct: 32  AGFYDLGPLGVRLKEKILQLWRDFFIRRHAGFVVEIETPIIAPSRVFEASGHLEHFTDPI 91

Query: 91  -----------------------------KEMLRLADRNDKAM----------------- 104
                                        +EM RL   +D                    
Sbjct: 92  VECRRCGRKFRADHLIEEKLGIKAEGLSIEEMTRLIREHDIRCPVCGGELGEVKKFNLLF 151

Query: 105 ------------IYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMR 151
                          P + + M   F+   ++ R  LP    QI    R+E+ PR G++R
Sbjct: 152 KTTIGPYSENVGYLRPENAQGMFVAFKRVYEAMRQRLPLGIAQIGRVARNEISPRQGMIR 211

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGGDLSHEF 210
            REF + +   F   PE   H+          +  R+G      +RAE    G D   E+
Sbjct: 212 LREFTIAEMEFF-FDPEDPGHN-----GLLDELLGRVGDTKLRILRAEEKEKGADEPSEY 265

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            V     E  V          +     DF   + +      +          ++ + FD 
Sbjct: 266 KVSELVEERIVANPWLAYWMAVA---RDFIKALGVPEQNMYFEEKPPEERAHYSAQTFDQ 322

Query: 271 LPENKRVSARGIEV-GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           L    R     IEV GH +   T Y L       G D      +     +   R +  V
Sbjct: 323 LVRVSRFGW--IEVSGHSYR--TDYDLSRHMKHSGQD--LRVFKQYREPVIVKRKMIFV 375


>gi|158317501|ref|YP_001510009.1| seryl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158112906|gb|ABW15103.1| seryl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 430

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 7/173 (4%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +      G +E SVP L +      +G+   +  ++       D+ M
Sbjct: 169 GARLERALVEFLLDLHTGEHGYVEYSVPYLVTRKTMTGTGQLPKFEADLFATQV-GDREM 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++F   + S R LP         FR E     +   GV+R  +F   + 
Sbjct: 228 FLIPTAEVPLTNLFAGEVVSPRQLPLALTARSACFRAEAGSYGKDTRGVLRLHQFEKVEL 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
               L  E ++   + M         RLGL    M   +G +G      F V 
Sbjct: 288 VRICLLDE-TRDELDVMVGHVEECLRRLGLTYRVMLLAAGDLGFSARLTFDVE 339


>gi|254556005|ref|YP_003062422.1| seryl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|254044932|gb|ACT61725.1| seryl-tRNA synthetase [Lactobacillus plantarum JDM1]
          Length = 425

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 97/308 (31%), Gaps = 69/308 (22%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G K    V     ++    G  E+  P + + +    +G++  + ++  R+     + + 
Sbjct: 170 GAKLERAVYNFFLDQHEAEGYTEVLPPYMVTDESMYGTGQFPKFKEDAFRITT---QDLT 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + + +R  +     LP  F  +   FR+E     R   G++R  +F   +  
Sbjct: 227 LIPTAEVPLVNYYRDEVIPAEKLPVYFTALSPAFREEAGSAGRDTKGLIRLHQFNKVEMV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F   PE S     K+  +   +  +LGL    +   +G +                   
Sbjct: 287 KF-TKPEDSWDELEKLTNNAESLLKKLGLPYHVITLTTGDM------------------S 327

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           F +    D  +      F +      I              H +   D            
Sbjct: 328 FTAAMTHDLEV-----WFPEQDKYREISSCSNCTDFQARRAHIQYRDD------------ 370

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGII- 339
                                   DGK  +V  +   G+   R VAA++E+  +  G + 
Sbjct: 371 ------------------------DGKLQFVHTLNGSGLAVGRTVAAILENYQNEDGTVT 406

Query: 340 WPDSVAPF 347
            PD + P+
Sbjct: 407 IPDVLVPY 414


>gi|91215382|ref|ZP_01252353.1| glycyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186334|gb|EAS72706.1| glycyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 512

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 107/353 (30%), Gaps = 71/353 (20%)

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
            +   P   + +   F +  KS R  +PF   QI   FR+E+  R  + R REF   +  
Sbjct: 212 DLYLRPETAQGIFVNFANVQKSGRLKIPFGIAQIGKAFRNEIVARQFIFRQREFEQMEMQ 271

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F    E  K                                     E          +V
Sbjct: 272 YFVRPGEELK-----------------------------------WFEHW--------KV 288

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
             +K      +  EN  F D   +       T           E               G
Sbjct: 289 LRTKWHQSLNLGEENYRFHDHEKMAHYANAATDIEFNFPFGFKELE-------------G 335

Query: 282 IEVGHIFYFGTKYSLP-MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVI------ESSH 333
           I     F      +L      F   + G+++   +    IG  R+  AV       E+  
Sbjct: 336 IHSRTDFDLKAHENLSGKKLQFFDPELGENYVPYVIETSIGLDRMFLAVFSSALQEETLK 395

Query: 334 DGKG---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           DG     +  P  +AP K ++  +   D    +  +++   L     +V +D+    +G 
Sbjct: 396 DGSSRTVLKLPSILAPVKAAVFPLLKKD-GLPEIAKELLKELQ-WDFNVVYDEKDA-VGR 452

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++   D  G P  + V      D  V I+HR T  ++ + + EV        +
Sbjct: 453 RYRRQDAAGTPFCITVDHDTKEDHCVTIRHRDTMEQQRVPMSEVKAIIQKEIN 505


>gi|262305773|gb|ACY45479.1| glu- + pro-tRNA synthetase [Peripatus sp. 'Pep']
          Length = 134

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+ G   + G  +S       +  +  +  +V   S+G+ + R +  +     D  G+
Sbjct: 17  RAIQGGTSHHLGQNFSKMFEIVIEDPETSQKSFVYQNSWGL-STRTIGVMCMVHGDNVGL 75

Query: 339 IWPDSVAPFKISLIN------IKAHDQVC-RDACEKIYARLSKVGCDVFWDDM-GEQIG 389
           I P  VA  +I +I       +   D+    D C++      K G     D       G
Sbjct: 76  ILPPKVAAVQIIIIPCGITTSLPEADEKALLDKCKEYEQLFVKHGLRCKGDYRDNYSPG 134


>gi|77362056|ref|YP_341630.1| histidyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|123586939|sp|Q3ICZ6|SYH_PSEHT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|76876967|emb|CAI89184.1| histidine tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 426

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 10/175 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +    V  I+RE     G  E+  P ++S DL+  S G   D   K
Sbjct: 6   QAVRGMNDCLPGDTQVWQKVENILRETVASFGYQEIRFPIVESTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADRN   +   P    V       +   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADRNGDLLTLRPEGTAVCVRAGNENGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            R+F      +F +           + +   +++   G+    +R E   +G + 
Sbjct: 122 YRQFHQFGLETFGIASADIDAE---VILLTAQLWESFGISE-HVRLELNSLGSNE 172


>gi|82703491|ref|YP_413057.1| histidyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|82411556|gb|ABB75665.1| histidyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 419

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 122/434 (28%), Gaps = 51/434 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDSYGK 91
           Q  +G+   LP      +     +R+     G   + +P ++  DL+V S     D   K
Sbjct: 7   QAVRGMNDILPDQIDRWEFFEQSVRDWMAAYGYRNIRMPIVEQTDLFVRSIGAVTDIVEK 66

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D  N +++   P            H   Y   P   Y     FR E RP+ G  
Sbjct: 67  EMYTFVDHLNGESLTLRPEGTASCVRAVLEHNLLYS-GPQRLYYSGAMFRHE-RPQKG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R+F    A +              M      ++ RLG+  + +      IG   S E 
Sbjct: 123 RYRQFHQVGAEALGYGGPDIDAELIIMGA---DLWKRLGVSGVRLE-----IGTLGSAES 174

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             +  T                 S     + +  L+S              + ++   DS
Sbjct: 175 RSVHRTRLIDYLQRHLCKLDEDASRRLHSNPLRILDSKNAGMREIIEGAPRLLDDLDEDS 234

Query: 271 LPENKRVSARGIEVGHIFYFGTK-------YSLPMSATFKGADG-KDHYVQMGSYGIGA- 321
           L   +R+     E G  F    +       Y+  +        G +      G Y     
Sbjct: 235 LIHFERLQQILREQGVDFEINPRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVE 294

Query: 322 ---------------MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                          +  V A++            DS+ P     + +            
Sbjct: 295 QVGGKATPACGFALGVERVLALVM-----------DSIIPQAPPDVYVVHKGDAAAGFAW 343

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI 425
           K    L   G             +Q   AD  G    +I+G       ++ IK  R    
Sbjct: 344 KTARHLRDRGFQAILHCGEGSFKAQMRKADASGARFAIIIGDDEAQAGEISIKPLREAAE 403

Query: 426 REDMSLEEVINYAS 439
           +  + L E  +   
Sbjct: 404 QVRVGLAEAADLLK 417


>gi|325142845|gb|EGC65213.1| seryl-tRNA synthetase [Neisseria meningitidis 961-5945]
          Length = 426

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 69/218 (31%), Gaps = 19/218 (8%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D EI  H  +    G+  +      G    +  GQ A     +   + +    + G  E 
Sbjct: 135 DFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEH 194

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +        +G+   + +++  +    D         PT E  +T+     I    
Sbjct: 195 YTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSE 254

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     +   G++R  +F   +     + PE S  +  +M     
Sbjct: 255 QLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEMVGHAE 313

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            I   L L    +   +G +G   +     E  V A  
Sbjct: 314 NILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQI 351


>gi|313682359|ref|YP_004060097.1| histidyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313155219|gb|ADR33897.1| histidyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 405

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 118/422 (27%), Gaps = 73/422 (17%)

Query: 54  NAIIREEQ---------NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDK 102
               R E           R G   +  P L+   L+  S     D  GKEM +  D+ D 
Sbjct: 14  EDYERFEYFLSQASTIAKRYGFHYIETPLLEETSLFKRSVGESSDIVGKEMYQFTDKGDN 73

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +   P     +   F  H    +     FY     FR E RP+ G  R REF       
Sbjct: 74  DVCLRPEGTAGVVRAFVQHKLDKKGGIHRFYYHGPMFRYE-RPQKG--RLREFHQ----- 125

Query: 163 FDLTPEGSKHSYNK--MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--EFIVLADTGE 218
           F +   G    Y    M +    I   LG+         G      ++  + +   ++  
Sbjct: 126 FGVESFGVDSVYEDALMIMMIADILKALGIGYRLKLNSLGDQHCMPAYRQKLVSFIESCG 185

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             +           P    D  +    N                  +  FD+L       
Sbjct: 186 DAICADCQRRKSTNPIRVLDCKNEHCQNL--YVNAPKLIDNLCEGCQSDFDTLKTILEQH 243

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGA---------------------DGKDHYVQMGSY 317
             G E+      G  Y    +  F                        DGK        +
Sbjct: 244 NIGYEIDTNLVRGLDYYSKTAFEFVSDNIGSQSAIAGGGRYDRLIEFLDGKPTPAV--GF 301

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPD----SVAPFKISLINIKAHDQVCRDAC-EKIYARL 372
            +G  R++  ++      +G         +++P  ++   I+  D+   +     + A L
Sbjct: 302 ALGIERLMELIVMPESVREGYYLGAMDALALSPVLLAAEKIRRSDKAVVEYEPRSLKAHL 361

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                        ++I ++             ++G   ++ + + +K  +      + L 
Sbjct: 362 KGA----------DRINAR----------YCAVIGENELAQNSIWVKDLVEKTESLIPLN 401

Query: 433 EV 434
           + 
Sbjct: 402 DF 403


>gi|262280927|ref|ZP_06058710.1| histidyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257827|gb|EEY76562.1| histidyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 430

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/447 (14%), Positives = 135/447 (30%), Gaps = 63/447 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM 
Sbjct: 8   KGFNDVLPTQTVAWRRLEQYLASLMDAYGYQQIRLPIIEQTGLFKRTIGDATDIVEKEMY 67

Query: 95  RLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+ +  +++   P            H       P  +Y +   FR E +P+ G  R 
Sbjct: 68  TFFDKGNPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWY-MGPMFRYE-KPQKG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F      +F +           + +   R++ R+G+    ++ E   +G     E   
Sbjct: 124 RQFHQFGVETFGVATPDIDAE---LILLTARLWKRMGVAD-KVQLELNTLG-----EADE 174

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNEKLFDS 270
             +     V    +  D                  +S +E           +H+    DS
Sbjct: 175 RTEYRNALVAFLNEHKDALDEDSQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDS 234

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           L   K++       G  F    K    +         K  +    +            + 
Sbjct: 235 LDHFKQLQDYLTAAGIQFVINQKLVRGLDYY-----NKTVFEWTTTALGS-----QGTVC 284

Query: 331 SSHDGKGIIW-----PDSVAP--------------------------FKISLINIKAHDQ 359
           +     G++      PD   P                           ++ L+   A+  
Sbjct: 285 AGGRYDGLVGQLKGKPDQSVPAVGFAMGMERLLLLLEQVEQAEVIRDCEVFLVAEPAYQT 344

Query: 360 VCRDACEKIYARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                 E++  +L        +     G  + SQ   AD  G    +I+G +     ++ 
Sbjct: 345 KALILAEQLRDQLEAANSSIRIKTGSQG-SMKSQMKKADQAGALFALILGEREWDAQQLA 403

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           +K   T  +  +++ +++ +   +F+ 
Sbjct: 404 VKELATAEQSQVAIADLVPFLIQKFTK 430


>gi|187250797|ref|YP_001875279.1| histidyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|229558665|sp|B2KBC0|SYH_ELUMP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|186970957|gb|ACC97942.1| Histidyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 410

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 126/412 (30%), Gaps = 52/412 (12%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPT 109
            + A  R      G  E+ +PTL+  +L+++S     D   KEM    D   + +   P 
Sbjct: 21  ELEACARRVFTLAGGTEVRIPTLELKELFIKSTGDTTDIVQKEMYAFEDAGGRVLAMRPE 80

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
                   +  +  +        + I   FR E RP+ G  R REF              
Sbjct: 81  GTPGTVRAYIENNFAQTAPVQKLFYIGNMFRAE-RPQAG--RYREFEQIGMEYIGNPSPA 137

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGD-----LSHEFIVLADTGE 218
           +      M      I    G+K+  ++  S       P         L  +F  L +  +
Sbjct: 138 ADAEIILMIK---DIVTSFGVKNYGVKINSLGCQECRPAYKQELINYLKKDFDTLCEKCK 194

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            ++    +     +     D           +   A     ++V                
Sbjct: 195 DRL----EKNPLRVLDCKIDGARFKENAPKQKLCAACENHFNEVKTFLQGRIDYIIDPSL 250

Query: 279 ARGIEVGH----IFYFGTKYSLP------MSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            RG++        F  G              +  K   G D       + +G  R +AA 
Sbjct: 251 VRGLDYYTRTVFEFQAGDSAQNAIAGGGRYDSLVKSMGGADMPAV--GFAMGVERTIAAR 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD--DMGE 386
            E+  +            F +SL      D+ C     +I + L   G  V  D     +
Sbjct: 309 GETKDN-------KQNKIFVVSL------DKNCNAKAFEIMSLLRSAG--VICDGGLFDK 353

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            + +Q   AD       +++G+       V ++   +G ++++   +++N  
Sbjct: 354 NLKAQMKQADRTKSSFALLLGADEFEKGVVTMRDLSSGEQQEIKFNDILNKV 405


>gi|71899891|ref|ZP_00682039.1| Seryl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
 gi|71730331|gb|EAO32414.1| Seryl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
          Length = 426

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E++VP + +AD    +G+   + ++M       +       T E  +T++ R+ I
Sbjct: 188 QHGYEEVNVPIIVNADSLHGTGQLPKFEEDMFSTQ-LGEHRRYLISTSEISLTNLVRNEI 246

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                LP       L FR E     R   G++R  +F   +  S    P+ S+  +++M 
Sbjct: 247 IEADRLPLRMVAHSLCFRSEAGSGGRDTRGMIRQHQFEKVELVSV-CKPQESEGEHHRMT 305

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
                +   LGL    +   +G +G   +     E  + +     ++    +  DF
Sbjct: 306 RCAETVLEMLGLPYRKILLCTGDMGFAATKTYDLEVWLPSQGMYREISSCSNCGDF 361


>gi|311334530|emb|CBN08646.1| seryl-tRNA synthetase [Microcosmus squamiger]
          Length = 449

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 12/186 (6%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--- 96
           Y            +  +  +     G   +  P     ++  E  +   + +E+ ++   
Sbjct: 194 YFLKGPLVFLEQALINLALQTLADNGYTPLYTPFFMRKEMMQEVAQLSQFDEELYKVIGK 253

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFG 148
               +D          T E+ +    R       +LP  +      FR E     R   G
Sbjct: 254 ASDKSDEGVDEKYLIATSEQPIAAFHRDEWLKREDLPIKYAGFSTCFRQEAGSHGRDTRG 313

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R  +F   + + F   P+ S  +++ M  +    + +LG+    +   SG +    + 
Sbjct: 314 IFRVHQFEKIEQFVFSA-PDDSWEAFDTMIGTAESFYKKLGIPYRIINIVSGALNNAAAK 372

Query: 209 EFIVLA 214
           +F + A
Sbjct: 373 KFDLEA 378


>gi|297583175|ref|YP_003698955.1| histidyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297141632|gb|ADH98389.1| histidyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 433

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 135/441 (30%), Gaps = 69/441 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLR 95
           KG  +++P  ++    +   + +   R G   +  P L  A L  +  G      KEM R
Sbjct: 14  KGTVTYMPEKERVRRRIRRTLEDVFIRYGCEPLETPILNQASLMTDKYGGGAEIVKEMYR 73

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+ ++ +            +   +    +  PF  Y+I   FRD         R REF
Sbjct: 74  LTDQGERDLALRYDLTMPFARVCVMNPTLRK--PFKRYEIGKVFRD---GPIKAGRYREF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              D     ++ + ++     M    L  F RLG+ ++ ++  +      L   F V   
Sbjct: 129 TQCDVDVLGVSSQLAEAELMIM---ALDAFERLGM-AVTIQYNNRKFLTGLLDVFGVPES 184

Query: 216 TGETQVFC---------SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              + V           +    +  +     D  + I                   +  +
Sbjct: 185 LIPSAVLTLDKLEKKGAAAVLDELLVKGVTEDVTERIGAFLTAGDAADIERIRVYGNGSQ 244

Query: 267 LFDS-------------------LPENKRVSARGIEV--GHIFYF--------------G 291
             +                            ARG+E+  G ++                G
Sbjct: 245 QVEEGAAELQELTSFLGATGTLDQCVFNPFLARGLEIYTGTVYEVFSAEPGALSSSIASG 304

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +Y   +       +G  +     S+G+     +  V+ES  D         +   K+  
Sbjct: 305 GRYDQAVGGLSGSDEG--YPSVGISFGLDV---ITTVLESRIDE-------EIQEEKVDC 352

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I   +     A   +   L   G  V  D  G++ G     A+  G    +++GS  V
Sbjct: 353 LIIPVGEP---QAALVLAQALRAQGTSVELDMSGKKPGKALERANREGVRDVILIGSDEV 409

Query: 412 SDSKVEIKHRLTGIREDMSLE 432
                 +K   TG  E +S  
Sbjct: 410 ETGIYTVKRMKTGEEEAVSFS 430


>gi|221125751|ref|XP_002157134.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 730

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 128/399 (32%), Gaps = 82/399 (20%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKD-AYSFDLTPEGS---KHSYNKMFVSYLR 183
           LPF   QI   FR+E+ PR G++R REF+M +  Y  D   +     K   + + V Y R
Sbjct: 314 LPFGGAQIGCGFRNEIAPRAGLLRVREFIMAEIEYFVDPEEKEITKFKDVQDTVCVLYPR 373

Query: 184 ----------------------IFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                                 IF+  +G     +++    IG D +          E  
Sbjct: 374 DVQMAGEPALKMTLKEALEKGIIFNTAMGYFLARIQSFMLKIGVDPTKMRFRQHMANEMA 433

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
            + + D  D  + +     + +   +           A+ +     +  + P +  V   
Sbjct: 434 HY-ACDCWDCELKTSYGWVECVGCADRACFDLQQHTNASGEKLVAMVDLATPVSVDVVEV 492

Query: 281 GIE---VGHIFY----------------------FGTKYSLPMSATFKGADG-------- 307
            +E   VG  F                          K +   S      +         
Sbjct: 493 CLEKSAVGKSFKNEAKAVTEYVAKMTVDEIEKLELSIKENGLFSINVNDKEYVLKKEMVK 552

Query: 308 -----------KDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------IIWPDSVAPFKI 349
                      ++    +     G  R++ AV+E +   +        +  P  +AP K 
Sbjct: 553 EVRRFKKDIHVREVSPHVVEPSFGIGRIMYAVLEQNFRVREGDEQRTWLSLPPLLAPVKC 612

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           S++ + + ++      +KI A L+++      DD    IG ++A  D +  P  V V   
Sbjct: 613 SVLPL-SKNEAFDPFVKKISAMLTELDVSHKVDDSSISIGRRYARTDEIAIPYGVTVDFD 671

Query: 410 FV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +    + V ++ R T  +  + +  V           R
Sbjct: 672 TINKEPNTVTLRERNTTKQIRVEVNSVGELVRDLVKGKR 710



 Score = 38.4 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+ AI R         +E+    L    +   SG  D +   M+R
Sbjct: 140 AGLYDFGPMGCAMENNLLAIWRSHFVLEEQFLEVRCTQLTPIQVLKASGHVDRFTDVMVR 199


>gi|288574556|ref|ZP_06392913.1| histidyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570297|gb|EFC91854.1| histidyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 430

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 131/433 (30%), Gaps = 35/433 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           +  +G+   LP       +   + R+  +     E+ +P  +  +L+        D   K
Sbjct: 6   KAPRGVRDILPDDSWKWGHTLNMSRKIADLFSYKEVHLPIFEHTELFARGIGDTTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P     M   +  H  +    P   +     FR E RP+ G  R
Sbjct: 66  EMYTFEDKGGRSITLRPELTASMVRCYLEHSMNGGAQPVKLWGSGPMFRYE-RPQKG--R 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F   D  +             ++ ++ + +F  LG+ ++ +      I      E  
Sbjct: 123 YRQFWQLDFEALGSDSPLVD---LEVIMTAIELFRNLGMSNLEV-----VINSVGCPECR 174

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                     D + +  L+             +    E L D  
Sbjct: 175 PAYRKALMDYLRPYLDELCGTCQNRFDRNPLRILDC-KNDRCKEITDGAPAIFETLCDEC 233

Query: 272 PENKRVSARGIE----VGHIFY---FGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMR 323
            E+ +    G++    V HI      G  Y    +   +  D G  + V  G        
Sbjct: 234 SEHFKAVTSGLDSLGIVYHIDKRLVRGLDYYTKTAFEVQSGDLGAQNAVCGGGRYDNLSE 293

Query: 324 VVAA----VIESSHDGKGIIWPDSVA-------PFKISLINIKAHDQVCRDACEKIYARL 372
            +       +  +     I+             P     + +   D++ R     +  RL
Sbjct: 294 AIGGPHVPGVGFAAGLDRIVLTMEQQGCDFGREPTP--DVFVVCADEIARSLAVDVLYRL 351

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G     D +G  + +Q   A   G  +  IVG   +    V +K      +  + LE
Sbjct: 352 RREGISADMDYLGRSMKAQMKSAVNGGSSVACIVGGDELDKGVVTVKDLSRSEQSQVELE 411

Query: 433 EVINYASHRFSNN 445
            + +  S     +
Sbjct: 412 SLTSSVSRLLDQS 424


>gi|307721641|ref|YP_003892781.1| seryl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306979734|gb|ADN09769.1| seryl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 418

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 8/166 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G +    +   + +   + G  E+SVP L +      +G+   +  ++ ++ D   + +
Sbjct: 171 MGARLERALINFMLDFNRQRGFDEVSVPALVNRKALEGTGQLPKFEDDLYKIQD---QEL 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++++  I S   LP         FR E     R   G++R  +F   + 
Sbjct: 228 FLIPTAEVPVTNLYQDEILSVDELPKRMTAYTSCFRKEAGAAGRDTRGMIRQHQFHKVEL 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            S   TP  S   ++ M      +   L L    +   +G +G   
Sbjct: 288 VSIS-TPGESNIIFDDMVTCASDLLKALELPHRLVTLCTGDLGFSA 332


>gi|114776321|ref|ZP_01451366.1| seryl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114553151|gb|EAU55549.1| seryl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 427

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 16/204 (7%)

Query: 14  NPRDAEIASH-KLMLRTGMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTG 65
           NPR  E+  H  + +  G++   +     G    +  G  A     +   + +   +  G
Sbjct: 133 NPRMDEVPPHWDIGVDLGILDFEAGATLAGSRFTVMKGAAARMERALMQFMLDLHADAHG 192

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+ VP + ++     +G+   +  ++ +L     +     PT E  +T++++  I   
Sbjct: 193 YQEVWVPAIANSKTMTGTGQLPKFADDLYKL---EGEDAFLIPTAEVPVTNLYQDKILDA 249

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP         FR E     R   G++R  +F   +      TPE +     ++    
Sbjct: 250 SELPKRHCAYTPCFRREAGSAGRDERGIIRQHQFDKVELVHI-TTPERALSDLEELTAHA 308

Query: 182 LRIFHRLGLKSIPMRAESGPIGGD 205
             +   L L    +   S  IG  
Sbjct: 309 EAVLQALELPYRKVELCSADIGFS 332


>gi|71274488|ref|ZP_00650776.1| Seryl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|71898321|ref|ZP_00680494.1| Seryl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
 gi|170730591|ref|YP_001776024.1| seryl-tRNA synthetase [Xylella fastidiosa M12]
 gi|238687926|sp|B0U3G5|SYS_XYLFM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71164220|gb|EAO13934.1| Seryl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|71731844|gb|EAO33902.1| Seryl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
 gi|167965384|gb|ACA12394.1| Serine--tRNA ligase [Xylella fastidiosa M12]
          Length = 426

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E++VP + +AD    +G+   + ++M       +       T E  +T++ R+ I
Sbjct: 188 QHGYEEVNVPIIVNADSLHGTGQLPKFEEDMFSTQ-LGEHRRYLISTSEISLTNLVRNEI 246

Query: 123 KSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                LP       L FR E     R   G++R  +F   +  S    P+ S+  +++M 
Sbjct: 247 IEADRLPLRMVAHSLCFRSEAGSGGRDTRGMIRQHQFEKVELVSV-CKPQESEGEHHRMT 305

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
                +   LGL    +   +G +G   +     E  + +     ++    +  DF
Sbjct: 306 RCAETVLEMLGLPYRKILLCTGDMGFAATKTYDLEVWLPSQGMYREISSCSNCGDF 361


>gi|332291633|ref|YP_004430242.1| seryl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169719|gb|AEE18974.1| seryl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 423

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 8/173 (4%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G   +   G +    + A   ++    G  E  VP L +      +G+      +M 
Sbjct: 162 AGAGFPVYKGKGARLQRALIAYFLDKNTEAGYTEYQVPHLVNEASGFGTGQLPDKEGQMY 221

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +    +  +   PT E  +T++FR  ++++  LP T       FR E         G+ 
Sbjct: 222 HVT---EDDLYLIPTAEVPVTNMFRGDLRNHNELPITCTGYTPCFRREAGSYGAHVRGLN 278

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           R  +F   +       PE S  + + M      I   L +    +R   G +G
Sbjct: 279 RLHQFDKVEIVRI-ERPEDSAAALDGMVDHVKTILDELEMPYRILRLCGGDLG 330


>gi|87303148|ref|ZP_01085946.1| seryl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87282315|gb|EAQ74275.1| seryl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 430

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    + + + ++    G  EM  P L ++     SG+   + +E    AD +   + 
Sbjct: 177 GARLERALISFMLDQHASRGYREMLPPILVNSASLTASGQLPKFAEESFSCADDD---LW 233

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T   R  I +   LP  +      FR E     R   G++R  +F   + Y
Sbjct: 234 LTPTAEVPLTSFHRDEILAAEQLPLKYAAYTPCFRREAGSYGRDTRGLIRLHQFNKVELY 293

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            F   P+ S+ ++ ++      I   L L    +    G +G   +  F
Sbjct: 294 WFCH-PDESEAAHAQLTADAEAILQSLELPYRVLDLCCGDLGFSAARTF 341


>gi|332291587|ref|YP_004430196.1| glycyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169673|gb|AEE18928.1| glycyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 511

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 108/335 (32%), Gaps = 48/335 (14%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   Q    FR+E+  R  + R REF   +   F    E
Sbjct: 219 TAQGIFVNFLNVQKTGRMKIPFGIAQTGKAFRNEIVARQFIFRMREFEQMEMQFFVRPGE 278

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             K  Y     + L+    LGL             G+ ++ F             +    
Sbjct: 279 EMK-WYEHWKETRLKWHKSLGL-------------GEENYRFHDHEKLAHYANAATDIEF 324

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +FP   +  +     +   +                E     +P           V    
Sbjct: 325 NFPFGFKELEGIHSRTDFDLKAHEEHSGKKLQFFDPELNESYVPYV---------VETSI 375

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +    SA+ +  + ++          G  RVV            +  P  +AP K
Sbjct: 376 GLDRMFLAVFSASLQDEELEN----------GTSRVV------------LKLPAILAPVK 413

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +   D    +  +KI   L K    V +D+    +G ++   D  G PL + V  
Sbjct: 414 AAILPLVKKD-GLPEVAQKIIDDL-KYDYRVAYDEKDA-VGRRYRRQDAAGTPLCITVDH 470

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + D+ V ++ R T  ++ + + ++ +  + + +
Sbjct: 471 DTLEDNMVTVRDRDTMEQQRVLITDLPDILNKKVN 505


>gi|300709494|ref|YP_003735308.1| glycyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299123177|gb|ADJ13516.1| glycyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 600

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKI 349
            S       G+     +     G  R + A+   ++            +     +AP  +
Sbjct: 425 FSIEEVTESGEHVTPHVVEPSFGVGRTLYALFAHAYREDEVDGEERSYLSLAPEMAPTTV 484

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  +   D    +   ++ + L   G +V +DD G  IG ++   D +G P  V V  +
Sbjct: 485 GVFPLMDRD-GLGERARELASELRAAGLEVAYDDSGN-IGRRYRRQDEVGTPFCVTVDYE 542

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVI 435
            + D  V ++ R +  +  + + +++
Sbjct: 543 SLEDGTVTLRDRDSTTQVRVPIVQLV 568



 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 64/217 (29%), Gaps = 73/217 (33%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQS 76
           +L  R G     +       G Y++ P G     ++    R+      G  E+  PT+  
Sbjct: 15  ELAKRRGFFFPSNGVYGGVAGFYTYGPEGAALKRHLEDAWRDRFTVREGNREIEAPTVMP 74

Query: 77  ADLWVESGRY-------------------DSYGKEMLRLADRN-----------DKAMIY 106
             ++  SG                     D   ++   + D              +  + 
Sbjct: 75  EAVFEASGHLDGFDDMLVECAECGESHRADHLIEDNTAIEDAEALPISEVEELIREHELV 134

Query: 107 GPTHE--------EVMTDIFRSHI---------------------------KSYRNLPFT 131
            P+          E    +F + I                            +   LPF 
Sbjct: 135 CPSCGAALAGEPVEEFNLMFETTIGPGSGQTGYMRPETAQGIFVEFPQLAEYARNQLPFG 194

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
             QI   +R+E+ PR G++R REF   +   F + PE
Sbjct: 195 VTQIGPAYRNEISPRKGIIRVREFTQAELEQF-VDPE 230


>gi|28377821|ref|NP_784713.1| seryl-tRNA synthetase [Lactobacillus plantarum WCFS1]
 gi|308179999|ref|YP_003924127.1| seryl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|38258537|sp|Q88XZ7|SYS2_LACPL RecName: Full=Seryl-tRNA synthetase 2; AltName: Full=Serine--tRNA
           ligase 2; Short=SerRS 2; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 2
 gi|28270654|emb|CAD63560.1| serine--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|308045490|gb|ADN98033.1| seryl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 425

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 97/308 (31%), Gaps = 69/308 (22%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G K    V     ++    G  E+  P + + +    +G++  + ++  R+     + + 
Sbjct: 170 GAKLERAVYNFFLDQHEAEGYTEVLPPYMVTDESMYGTGQFPKFKEDAFRITT---QDLT 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + + +R  +     LP  F  +   FR+E     R   G++R  +F   +  
Sbjct: 227 LIPTAEVPLVNYYRDEVIPAEKLPVYFTALSPAFREEAGSAGRDTKGLIRLHQFNKVEMV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F   PE S     K+  +   +  +LGL    +   +G +                   
Sbjct: 287 KF-TKPEDSWDELEKLTNNAESLLKKLGLPYHVITLTTGDM------------------S 327

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           F +    D  +      F +      I              H +   D            
Sbjct: 328 FTAAMTHDLEV-----WFPEQDKYREISSCSNCTDFQARRAHIQYRDD------------ 370

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGII- 339
                                   DGK  +V  +   G+   R VAA++E+  +  G + 
Sbjct: 371 ------------------------DGKLQFVHTLNGSGLAVGRTVAAILENYQNEDGTVT 406

Query: 340 WPDSVAPF 347
            PD + P+
Sbjct: 407 IPDVLVPY 414


>gi|225851091|ref|YP_002731325.1| seryl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645430|gb|ACO03616.1| seryl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 419

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 13/209 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+  P L  +++ V +G+   + +++ R++   ++ +   PT
Sbjct: 178 RALINFMLDLHTKEHGYTEVWTPVLVRSEILVGTGQLPKFEEDLYRIS---EEDLYLLPT 234

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    I     LP  +      FR E     +   G++R  +F   +     +
Sbjct: 235 AEVSLTNLHAGEILKEEELPKYYTAYTPCFRREAGSHGKDVRGILRQHQFDKVELVKI-V 293

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
            PE S     K+     ++   L L    +   +G +G   +     E  + +     ++
Sbjct: 294 KPEDSYEELEKLVREAEKVLQLLELPYRVVELCTGDLGFSAAKTYDIEVWIPSQKRYREI 353

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +  DF        F D    N  V 
Sbjct: 354 SSCSNTEDFQARRAKIRFKDKDGKNRFVH 382


>gi|115532352|ref|NP_001040691.1| Prolyl tRNA Synthetase family member (prs-2) [Caenorhabditis
           elegans]
 gi|90185946|emb|CAJ85764.1| C. elegans protein T27F6.5c, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 166

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 314 MGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
           M  +GIG  R++ A I+      K +  P ++APF   +I  K+    V  +      +R
Sbjct: 1   MCCFGIGVTRLLPAAIDLLSVSDKALRLPRAIAPFDAVIIVKKSLMSNVIVEMASSSASR 60

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG---SKFVSDSK--VEIKHRLTG- 424
             K G     DD  E   G +   A+ LG P  +++     + ++  K  +E+       
Sbjct: 61  YLKGGI--LLDDRVEMSAGKRIHDANRLGIPFILVIANETERSLATQKPVIEVFTTHAKS 118

Query: 425 ----IREDMSLEEVINYASHRF 442
                +  MSL+  + +     
Sbjct: 119 AEPMSQGSMSLDRFVTFVQSTL 140


>gi|307298529|ref|ZP_07578332.1| histidyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915694|gb|EFN46078.1| histidyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 424

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/418 (16%), Positives = 124/418 (29%), Gaps = 41/418 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V   IR   +R    E+  P  ++ +L+  S     D   KEM    D+  +++   
Sbjct: 23  WHYVEEAIRSISHRYSFTEIRTPIFEATELFKRSVGESTDVVQKEMYTFEDKGGRSITLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +       P   +     FR E +P+ G  R R+F    A       
Sbjct: 83  PEGTASVARAFIENSLVNLGAPIKLFYNGPMFRYE-KPQAG--RLRQFHQFGAEILGSES 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCSKD 226
             +     +M  S+L+      LK    +     IG     E    A             
Sbjct: 140 PLADFEIIEMANSFLK-----ELKVSKTKLFINSIGCPKCREDYKTALRDYYRDKLPGMC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                    N        ++  + +         D      F+ L      +    EV  
Sbjct: 195 TDCRRRFDTNVLRLLDCKIDKELAKKAPSILDYLDEDCRNHFEELQWYLEKADIEYEVDP 254

Query: 287 IFYFGTKY--SLPMSATFKGADGKDHYVQMGSY-----------------GIGAMRVVAA 327
           +   G  Y               +D  V  G Y                  IG  R+V  
Sbjct: 255 LLVRGLDYYSRTAFEIRSSSLGSQDQIVGGGRYDGLVEYIGGNSCPAVGFAIGLERIVML 314

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCDVFWDDMGE 386
           +     +      P      +++++     + +   D       RL K+G   + D M  
Sbjct: 315 LKSEKVNVNVPKIP------QVAILAFGREENIRGFDYSR----RLRKMGISTYVDVMER 364

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + ++   A  +G  + +IVG + +    V +K    G +  +  + + +Y   +  +
Sbjct: 365 NMRNKMKHAARIGAKISLIVGKEEIERDIVTVKIMSDGSQFQVDSDYMSDYVVDKLRD 422


>gi|296535523|ref|ZP_06897707.1| serine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296264149|gb|EFH10590.1| serine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 426

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 14/198 (7%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   +        G  E SVP L +      +G+   + +++ R  D         PT
Sbjct: 174 RALGQYMISLHVEEHGYTETSVPLLVNDATMYGTGQLPKFEEDLFRTTD----GRWLIPT 229

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++    + + + LP  +  +   FR E     R   G++R  +F   +  +   
Sbjct: 230 AEVPLTNLVAGELLAEQALPLRYTALSPCFRSEAGSAGRDTRGMLRQHQFTKVEMVAI-T 288

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQV 221
             E S   + +M     R+   LGL    +   +G  G   +     E  +       ++
Sbjct: 289 RAEDSAAEHERMTRCAERVLTELGLVWRRVLLCAGDTGFSAARTYDLEVWLPGQGAWREI 348

Query: 222 FCSKDFMDFPIPSENTDF 239
               +  DF     N  +
Sbjct: 349 SSCSNCRDFQARRMNARY 366


>gi|260890524|ref|ZP_05901787.1| hypothetical protein GCWU000323_01702 [Leptotrichia hofstadii
           F0254]
 gi|260859766|gb|EEX74266.1| serine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 423

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 20/251 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIE 68
           D EI SH +L +  G++               +     +    + A + +      G  E
Sbjct: 133 DFEIKSHDELGVELGILDFERGAKLGGSRFTVYKNAAARLERALIAFMIDVHTGEHGFEE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P L   ++ V +G+   +  +  ++       M   PT E  +T++  S I     L
Sbjct: 193 IFTPQLVRREMMVGTGQLPKFADDAYKI---EGDEMYLIPTAEVTLTNLHNSEILDEEEL 249

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     R   G++R  +F   +     + PE S     KM     +I
Sbjct: 250 PKYYCGYTACFRKEAGSGGRDLKGLIRQHQFNKVEMVKI-VKPETSYDELEKMVNCAEKI 308

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +L L    +   SG IG   +     E  V +     ++    +  DF        + 
Sbjct: 309 LQKLELPYRVLALCSGDIGFSAAKTYDLEVWVPSQGKYREISSCSNTEDFQARRAMIKYR 368

Query: 241 DIISLNSIVEQ 251
           +  +  S    
Sbjct: 369 EKETGKSHFVH 379


>gi|190570965|ref|YP_001975323.1| seryl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|238065111|sp|B3CQ06|SYS_WOLPP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|190357237|emb|CAQ54659.1| seryl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 426

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 20/233 (8%)

Query: 23  HKLMLRTGMI-HQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQ 75
           ++L  R G++  + +    G    +  GQ A     +   + E   N     E+  P L 
Sbjct: 141 YELGERLGLMDFEQAAKISGSRFTILKGQLAKLGRALINFMLETHVNEFAYTEVYHPALV 200

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +     G+   +  +     D+        PT E V+T++    I   + LP  F   
Sbjct: 201 KNEAMYNVGQLPKFSDDSYLTTDKLR----LIPTSEVVLTNLVADKIIEEKELPIRFTAY 256

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +  S   T + SK    +M  +   I  +L L 
Sbjct: 257 SECFRKEAGSAGRDTRGMIRQHQFGKVELVSI-TTEDQSKDELERMTNAAEEILKKLELP 315

Query: 192 SIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              M   SG +G         E  +       ++    +   F     NT + 
Sbjct: 316 YRIMLLCSGDMGFAAQKTYDIEVWLPEQNKYREISSCSNCGTFQARRMNTKYF 368


>gi|161511500|ref|NP_853504.2| seryl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|46577176|sp|Q7NAD6|SYS_MYCGA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|284812299|gb|AAP57072.2| Seryl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284931004|gb|ADC30943.1| Seryl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 420

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 15/262 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G + +  +        N     E   P + + D +  SG++  + +++ +L   N
Sbjct: 164 IYKKDGARLMRAIQQFCLYV-NADKYEEYLPPVIVNKDSYYGSGQFPKFVEDVFKLEGTN 222

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                   T E  + ++ R+ I    +LP  +      FR E     +   G++R  +F 
Sbjct: 223 ---YYLASTAEVQLVNLHRNEILKEADLPKYYTASTACFRSEAGSAGKDTKGLIRQHQFY 279

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +     + P  SK  +  M     +I   L L    M   +G +G   +     E  +
Sbjct: 280 KTELVKI-VHPSTSKQEHEAMAKDAEKILELLELPYRRMVLCTGDMGFSATKTYDLEVWI 338

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            ++    ++    +  DF     N  F D IS  ++        A   D     + +   
Sbjct: 339 PSENKYREISSISNCGDFQARRANIKFKDAISKKNLYVHTLNASALAHDRLFVAIVE--N 396

Query: 273 ENKRVSARGIEVGHIFYFGTKY 294
             ++  +  I    + YFG +Y
Sbjct: 397 YQQKDGSIKIPKALVKYFGKEY 418


>gi|323490068|ref|ZP_08095289.1| glycyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396364|gb|EGA89189.1| glycyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 458

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 150/445 (33%), Gaps = 58/445 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEML--- 94
           + + PLG +  +N+     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 30  WDYGPLGVELKNNIKKAWWKKFVQESPYNVGLDAAILMNPKTWVASGHVGNFNDPMIDCK 89

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG---VMR 151
               R+    +     +    ++    +           ++  +  D   P  G      
Sbjct: 90  SCKTRHRADKLIEDALDAKGIELIVDGLSFD-----RMAELIQEH-DVKCPTCGAQDFTE 143

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R+F +       +T   +   + +      +FV+Y  +   +      M      IG  
Sbjct: 144 IRQFNLMFKTFQGVTEASTNEIFLRPETAQGIFVNYKNVQRSMR---KKMPFGIAQIGKS 200

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +E      T  T+ F   +   F  P E+ ++       S            +    E
Sbjct: 201 FRNEITPGNFTFRTREFEQMELEFFCKPGEDLEWYAYWRDFSKNWLLNLNMNEDNMRLRE 260

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFG----------TKYSLPMSATFKGAD--------G 307
              D L      S   +++ + F FG          T + L     + G D         
Sbjct: 261 HDEDEL---SHYSNATVDIEYKFPFGWGELWGIADRTDFDLKRHMEYSGEDFNYIDPVTN 317

Query: 308 KDHYVQMGSYGIGAMRV-VAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHD 358
           +          +GA RV +A ++++ H+           + +  ++AP+K +++ +    
Sbjct: 318 ERFVPYCIEPSLGADRVTLAFLVDAYHEEALENDDKRTVLKFHPALAPYKAAVLPLSKK- 376

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +    ++A L+K    V +D+  + IG ++   D +G P  +      V D +V +
Sbjct: 377 --LAEGATGVFADLAKH-FMVDYDES-QSIGKRYRRQDEIGTPFCITYDFDSVEDGQVTV 432

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           +HR +  +  M + EV  Y      
Sbjct: 433 RHRDSMEQTRMPIAEVQAYIEKHIQ 457


>gi|319778381|ref|YP_004129294.1| Seryl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317108405|gb|ADU91151.1| Seryl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 459

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 70/244 (28%), Gaps = 42/244 (17%)

Query: 19  EIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           E+  H  +    G+    +    G       G  A     +   +        G  E   
Sbjct: 145 EVKDHVTLGEPLGLDFDCAIKLTGSRFSFMKGAVARMHRALAQFMLNTHTSEHGYTECYT 204

Query: 72  PTLQSADLWVESGRYDSYGKEMLRL--------------------------ADRNDKAMI 105
           P + ++     +G+   + ++M  +                               + + 
Sbjct: 205 PYIVNSSTLFGTGQLPKFKEDMFWVIKGGEGLDPEAKTDSEDSSLGASGATTSEQKEDLY 264

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T   ++ I     LP         FR E     R   G++R  +F   +  
Sbjct: 265 LISTSEITLTGTVKNSIVVETELPIRLTAHSPCFRSEAGSGGRDTRGIIRQHQFDKVEMV 324

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +  +M     +I   L L    ++  +G +G   +     E  V +   
Sbjct: 325 QI-AHPEKSYEALEEMLGHAEKILQALALPYRVVQLCTGDMGFSAAKTYDLEVWVPSQNT 383

Query: 218 ETQV 221
             ++
Sbjct: 384 FREI 387


>gi|222111942|ref|YP_002554206.1| seryl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|254783024|sp|B9MEG7|SYS_ACIET RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|221731386|gb|ACM34206.1| seryl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 442

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 25/258 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMS 70
            P+D       L L   M  + S G    +  G  A     +   + + Q    G  E  
Sbjct: 144 TPKDHVDLGEPLGLDFDMGVKLS-GSRFTVMKGGIARLHRALAQFMLDVQTQEHGYTECY 202

Query: 71  VPTLQSADLWVESGRYDSYGKEML----------RLADRNDKAMIYGPTHEEVMTDIFRS 120
           VP + +AD    +G+   +  ++            + D  +  +   PT E  +T+  R 
Sbjct: 203 VPYVVNADSLKGTGQLPKFEGDLFAAQKGGQDAEPVPD--NAQLYLIPTSEVPLTNFVRD 260

Query: 121 HIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            + +   LP         FR E     R   G++R  +F   +     + P+ S  +  +
Sbjct: 261 EVLAEAQLPLKLTAHTPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQI-VHPDKSYEALEE 319

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPI 232
           M      +  +LGL    M   +G +G   +     E  + A     ++    +   F  
Sbjct: 320 MTRHAEAVLQKLGLPYRVMSLCTGDMGFGAAKTYDLEVWLPAQNTYREISSVSNCEAFQA 379

Query: 233 PSENTDFDDIISLNSIVE 250
                 F +    N +V 
Sbjct: 380 RRLQARFKNAQGKNELVH 397


>gi|121595739|ref|YP_987635.1| seryl-tRNA synthetase [Acidovorax sp. JS42]
 gi|166200592|sp|A1WBD4|SYS_ACISJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|120607819|gb|ABM43559.1| seryl-tRNA synthetase [Acidovorax sp. JS42]
          Length = 442

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 25/258 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMS 70
            P+D       L L   M  + S G    +  G  A     +   + + Q    G  E  
Sbjct: 144 TPKDHVDLGEPLGLDFDMGVKLS-GSRFTVMKGGIARLHRALAQFMLDVQTQEHGYTECY 202

Query: 71  VPTLQSADLWVESGRYDSYGKEML----------RLADRNDKAMIYGPTHEEVMTDIFRS 120
           VP + +AD    +G+   +  ++            + D  +  +   PT E  +T+  R 
Sbjct: 203 VPYVVNADSLKGTGQLPKFEGDLFAAQKGGQDAEPVPD--NAQLYLIPTSEVPLTNFVRD 260

Query: 121 HIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
            + +   LP         FR E     R   G++R  +F   +     + P+ S  +  +
Sbjct: 261 EVLAEAQLPLKLTAHTPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQI-VHPDKSYEALEE 319

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPI 232
           M      +  +LGL    M   +G +G   +     E  + A     ++    +   F  
Sbjct: 320 MTRHAEAVLQKLGLPYRVMSLCTGDMGFGAAKTYDLEVWLPAQNTYREISSVSNCEAFQA 379

Query: 233 PSENTDFDDIISLNSIVE 250
                 F +    N +V 
Sbjct: 380 RRLQARFKNAQGKNELVH 397


>gi|238763314|ref|ZP_04624278.1| Seryl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238698413|gb|EEP91166.1| Seryl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 430

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 21/239 (8%)

Query: 12  QENPRDAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NR 63
           +    D E+  H  +     G+    +    G    +  GQ A     +   + +    +
Sbjct: 128 EPRKYDFEVRDHVSLGEMAGGLDFAAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEK 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFR 119
            G +E  VP L +      +G+   +G ++       +++        PT E  +T++ R
Sbjct: 188 HGYLETYVPYLVNHATLYGTGQLPKFGGDLFHTKPLEEESDSSTYALIPTAEVPVTNLVR 247

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I    +LP         FR E     R   G++R  +F   +       PE S  +  
Sbjct: 248 DEILEEESLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-TRPEDSMAALE 306

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           ++     ++   L L    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 307 ELTGHAEKVLQLLELPYRKVLLCTGDMGFGSSKTYDLEVWLPAQDTYREISSCSNMWDF 365


>gi|83311620|ref|YP_421884.1| seryl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|123541738|sp|Q2W4A0|SYS_MAGSA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|82946461|dbj|BAE51325.1| Seryl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 422

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 22/237 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMS 70
           D +    KL L   M    +    G    +  GQ A     +   + + Q    G  EM 
Sbjct: 138 DHDAIGAKLGL---MDFDGAAKLSGARFVVLKGQLARLQRAIGQFMLDLQTVEHGYTEMD 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +        +G+   +G+++ +    +       PT E  +T++    I   + LP 
Sbjct: 195 PPLMVKDGAAFGTGQLPKFGEDLFKTNTGH----WLIPTAEVPLTNLVSDEILDEKALPL 250

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
               +   FR E     +   G++R  +F   +  S    P+ S   + +M      +  
Sbjct: 251 RMTALTPCFRSEAGAAGKDTRGMIRQHQFHKVEMVSI-AHPDASGAEHERMTQCAETVLQ 309

Query: 187 RLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           RLGL    +   +G +G         E  +       ++    +  DF        F
Sbjct: 310 RLGLAYRVIVLCTGDMGFSAQKTYDIEVWLPGQQRYREISSCSNCGDFQARRMKARF 366


>gi|324019016|gb|EGB88235.1| seryl-tRNA synthetase [Escherichia coli MS 117-3]
          Length = 430

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     ++  + +    + G  E
Sbjct: 133 DFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L + D    +G+   +  ++       ++A        PT E  +T++ R  I  
Sbjct: 193 NYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIID 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +     + PE S  +  +M   
Sbjct: 253 EDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-VRPEDSMAALEEMTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADTGETQVFCSKDFMDF 230
             ++    GL    +   +G +G         E  + A     ++    +  DF
Sbjct: 312 AEKVLQLRGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDF 365


>gi|288801194|ref|ZP_06406649.1| serine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331805|gb|EFC70288.1| serine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 429

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 108/316 (34%), Gaps = 65/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPFYIGKMARLQRALEAFFLEEARKSGYLEVQPPYVVNQASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 224 AQLDN---LYLIPTAEVPVTNIFRDVILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    D  PE S  S  +M V    +  +L L    ++      GGD+S    
Sbjct: 281 LHQFDKVEIVRID-KPEHSYESLKEMLVHVEGLCKKLELPYRILKLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S        +S  S  E + A        H E      
Sbjct: 332 ----------FTSAICFDFEVWSAAQQRWLEVSSVSNFESYQANRLKCRYRHTED----- 376

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + IE+ H    G+  +LP                         R+VAA++E+
Sbjct: 377 --------KKIELCHTLN-GSALALP-------------------------RIVAAILEN 402

Query: 332 SHDGKGIIWPDSVAPF 347
           +   KGI  P  + P+
Sbjct: 403 NQTSKGIRVPKVLVPY 418


>gi|46397793|sp|Q7VWL1|SYH_BORPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 428

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 137/435 (31%), Gaps = 51/435 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP      +    I+R      G   +  P L+   L+    G   D   KEM  
Sbjct: 13  GMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTDIVEKEMYT 72

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N  ++   P     +      H   Y + P   Y I   FR E RP+ G  R R+
Sbjct: 73  FTDALNGDSLTMRPEMTAGIVRASIEHNMLY-DRPHRVYAIGPVFRHE-RPQRG--RYRQ 128

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D  +              M V   R++  LGL+ + +   S              A
Sbjct: 129 FHQIDVEALGFAGPDVDAE---MIVMLARLWKLLGLQDVRLELNS----------LGQPA 175

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    +    +         +      + S    V     P          +LFD L E 
Sbjct: 176 ERAAHRAALIEHLERHQDVLDEDGRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEA 235

Query: 275 KRVSARGI-----EVGHIFYFGTK-------YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            R    G+     + G  +    +       Y+L +        G    V  G    G +
Sbjct: 236 SRSHFDGLCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLV 295

Query: 323 RVVA-----AVIESSHDGKGI-IWPDSV---APFKISLINIKAHDQVCRDACEKIYARLS 373
            ++      AV  +    + + +W  SV    P +  +  +   ++  R    ++  +L 
Sbjct: 296 ELLGGKPTPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGEEGQR-LAARVGEQLR 354

Query: 374 KVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIR 426
             G DV         G +  F  AD  G  + VI+G   V+     IKH          +
Sbjct: 355 DAGLDVIVHAGA--AGFKAQFKRADASGARIAVILGGDEVASRTASIKHLRGPVGADAAQ 412

Query: 427 EDMSLEEVINYASHR 441
           + + L ++ +    +
Sbjct: 413 QQVPLAQLADVLKSK 427


>gi|189345839|ref|YP_001942368.1| histidyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|229558643|sp|B3EFA6|SYH_CHLL2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189339986|gb|ACD89389.1| histidyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 430

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 148/437 (33%), Gaps = 48/437 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYG 90
           +Q  KG     P       +V  +I       G  E+  P  +  +L+  S     D  G
Sbjct: 4   YQVVKGARDIFPDEILQWKHVEGVIHRLAALYGFNEIRTPVFEYTELFQRSIGSSTDIVG 63

Query: 91  KEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFG 148
           KEM     D + +++   P     +              P    Y I   FR E RP+ G
Sbjct: 64  KEMFSFLPDPSGRSITLRPEMTAGVMR-AALQKNLLAAAPVQKLYYISELFRKE-RPQAG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F    A    +    S  +  ++    + +F  LGL+ + +R  +    G++  
Sbjct: 122 --RQRQFSQFGAELLGV---SSPAAVAEVITFMMHVFEDLGLQGLKLRINT---LGNMDD 173

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH--NEK 266
                         C +   D        +   I+   +   Q     A     +   E 
Sbjct: 174 RKRYRDALRNYLAPCYEQLDDASKERFEKNPLRILDSKNPEMQQIVKDAPKLYDYLGREA 233

Query: 267 LFDSLPENKRVSARGIEVGHIFYF--GTKY---------SLPMSATF-KGADGKDHY--V 312
           L D       +SARGI          G  Y         S  + A    G  G+     V
Sbjct: 234 LDDFEKVLFYLSARGIPFQIDHRLVRGLDYYSYTAFEVTSSALGAQDALGGGGRYDSLAV 293

Query: 313 QMGSYG--------IGAMRVVAAVIESSHDGKGIIW-PDSVAPFKISLINIKAHDQVCRD 363
           ++GS G        +G  R++ A+       +G+    D+ AP    ++      +   D
Sbjct: 294 ELGSSGEVPASGFAVGMERLLIAM-----QKQGLFSDLDAAAPSVFVIV----QQEELFD 344

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L + G     D  G  + +Q   A+ +     + VGS  ++  K  +K   +
Sbjct: 345 QALEIVTTLRRAGISAVIDLAGRSMKAQLREANRMNAANALFVGSDELASGKCTMKDLRS 404

Query: 424 GIREDMSLEEVINYASH 440
            ++++  LEE+I+    
Sbjct: 405 SLQDEYFLEEIIDKFRK 421


>gi|149926359|ref|ZP_01914620.1| histidyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824722|gb|EDM83936.1| histidyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 441

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 33/425 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  KG+   LP+     +N+  ++RE     G   +  P L+   L+    G   D   K
Sbjct: 19  QSVKGMNDVLPVEGIHWENLEVMLREWLTSYGYRLIKTPVLEPTSLFRRGIGEVTDIVEK 78

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    DR N   +   P     +      H  +Y   P   Y +   FR E RP+ G  
Sbjct: 79  EMFSFVDRLNGDELTLRPEFTAGIARATIQHNLTYAA-PQRVYSMGPVFRHE-RPQRG-- 134

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-GPIGGDLSHE 209
           R R+F   D  +              M     R++  +GL+ + +     G     L+H 
Sbjct: 135 RYRQFHQLDVEALGFAGPDIDAELIVML---SRLWREMGLEDVRLEINCLGEAPERLAHR 191

Query: 210 ------FIVLAD-TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 F   A+   E             + ++N    D+++    + ++    +     
Sbjct: 192 QALITYFEANAELLDEDAKRRLHSNPLRILDTKNPTMQDMVNGAPRLSEFLGEQSLAHYQ 251

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYGI 319
             ++L D        + R +  G  +Y  T +   +  +        G  +   +   G 
Sbjct: 252 GVKRLLDDAGVRYIENPRLV-RGLDYYNLTVFEWITDALGTQGTICGGGRYDGLIEVLGG 310

Query: 320 GAMRVVAAVIESSHDGKGIIW---PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
                +   I      +  +    PD  A   + +++     +        +   L   G
Sbjct: 311 KPTPAIGFAIGLERLLELYLEVNQPDDTADLDVYVVH---QGEGTARRAFTLAEELRDAG 367

Query: 377 CDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEE 433
             V     G   G +     AD+ G  + VI+G   ++     +K  R    +E+   E 
Sbjct: 368 FAVVLHAGGG--GFKSQMKRADVSGAAVAVILGENELNAGTAAVKLLRGESKQEEFKQEG 425

Query: 434 VINYA 438
           +    
Sbjct: 426 LAEAI 430


>gi|150399673|ref|YP_001323440.1| histidyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|166228584|sp|A6UQQ6|SYH_METVS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150012376|gb|ABR54828.1| histidyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 418

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 139/435 (31%), Gaps = 48/435 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           + Q  KG   +LP+  K    +   +R   +     E++ PT +S +L   ++G  +   
Sbjct: 1   MFQKPKGTRDFLPVEMKKRKLIEKKLRNIFDSYNFSEINTPTFESFELLSKKTG--EEIR 58

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            ++    D  ++ M   P     +   + +  K+    P   Y     FR E  P+ G  
Sbjct: 59  NQLFVFNDHGNREMGLRPEFTSSVARFYINEFKNT-PKPVKMYYFGNCFRYE-NPQAG-- 114

Query: 151 RSREFLMK------------DAYSFDLTPEGSK------HSYNKMFVSYLRIFHRLGLKS 192
           R REF               DA   ++  EG K                  +F +  L  
Sbjct: 115 RYREFWQMGAELIGSNKSISDAEVLNMAIEGLKSINMDFEINIGHLGVLKGVFEKYSLSE 174

Query: 193 IPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                    I  + +     VL    E +       +   +  +            + + 
Sbjct: 175 EDETLIRRLIDKEDTEGLKQVLLKIEEEKNIEISKKVFEVLTLKGGKEVISKLKEKLTDF 234

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKD 309
             +  A  +     +L           ARG++   G +F             +   +G  
Sbjct: 235 EKSLDALNNLDEILELVPHDYVVNFGIARGLDYYTGMVFEI-----------YGKKEGAR 283

Query: 310 HYVQMGSYGIGAMRVVAA----VIESSHDGKGIIWP---DSVAPFKISLINIKAHDQVCR 362
                G Y    + +        +  ++    II       V    I +I +K +D    
Sbjct: 284 QVCGGGRYD-NLIELFEGEKSPAVGFAYGFDRIILNIDDFEVQDDSIFIIPVK-NDIFLL 341

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C KI   L   G  V  D MG ++      A+       +I+G   +   K+ +K+  
Sbjct: 342 KECLKIAKTLRDFGNPVEIDLMGRKLNKALNYANSKNIKRVIIIGENDIFSGKIPLKNME 401

Query: 423 TGIREDMSLEEVINY 437
           TG +  + ++++ N+
Sbjct: 402 TGEQVLIDVKDLKNF 416


>gi|145509547|ref|XP_001440712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407940|emb|CAK73315.1| unnamed protein product [Paramecium tetraurelia]
          Length = 451

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 90/313 (28%), Gaps = 61/313 (19%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
           Y     G      + +   +  N+ G   +  P         E+ +   +  ++ ++   
Sbjct: 175 YFLKGPGLLLNQALVSYGIQFLNQRGYTPVQTPFFMKKTCMAETAQLSDFDDQLYKVTGN 234

Query: 100 -NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            +D+ +    T E+ ++ ++R      ++LP  +      FR E     +  +G+ R  +
Sbjct: 235 PDDEDLYLIATSEQPISAMYRKEWLEPKDLPIKYGGSSTCFRKEAGAYGKDVWGIFRVHQ 294

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +      +PE S   +++M  +       L L    +   SG +    + ++    
Sbjct: 295 FEKIE-QFVICSPEESWKFHDEMITAGQDFVKSLELPYRVVNIVSGALNDAAAKKY---- 349

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                                     A      + +   S    
Sbjct: 350 ---------------------------------------DLEAWFPGYKDYRELQSCSNC 370

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
               +R +E+               A       K +   + +      R +  ++E+   
Sbjct: 371 LDYQSRALEI------------RFGAKKTDEKEKKYVHMLNATLCATERTLCCILENYQT 418

Query: 335 GKGIIWPDSVAPF 347
             G+  P  + PF
Sbjct: 419 ETGVKVPVVLQPF 431


>gi|169830232|ref|YP_001716214.1| seryl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
 gi|238688210|sp|B1I161|SYS_DESAP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169637076|gb|ACA58582.1| seryl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
          Length = 425

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 9/167 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +   +R G  E+  P L +A     +G+   +  +M ++    ++  
Sbjct: 169 GARLERALICFMLDLHVDRHGYTELFPPFLVNAQSMTGTGQLPKFAADMYKV---ENEDY 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+  R  I     LP  +      FR E     R   G++R  +F   + 
Sbjct: 226 YLVPTAEVPVTNYLRDEILDGDTLPRKYAAYSACFRAEAGAAGRDTRGLIRQHQFNKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             F   PE S+    K+      +   L L    +   +G +G   S
Sbjct: 286 VKF-TRPEDSEDELEKLVRDAEEVLRLLRLPYRVVLLCTGDLGFSSS 331


>gi|123441840|ref|YP_001005823.1| seryl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332162217|ref|YP_004298794.1| seryl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|166223310|sp|A1JMG0|SYS_YERE8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122088801|emb|CAL11607.1| seryl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606280|emb|CBY27778.1| seryl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325666447|gb|ADZ43091.1| seryl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 430

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D E+  H  +     G+    +    G    +  GQ A     +   + +    + G +E
Sbjct: 133 DFEVRDHVSLGEMAGGLDFAAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEKHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L +      +G+   +G ++       +++        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHATLYGTGQLPKFGGDLFHTKPLEEESDSSNYALIPTAEVPVTNLVRDEILE 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +       PE S  +  ++   
Sbjct: 253 EESLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQI-TRPEDSMAALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   L L    M   +G +G   S     E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLELPYRKMLLCTGDMGFGSSKTYDLEVWLPAQNTYREISSCSNMWDF 365


>gi|159039176|ref|YP_001538429.1| seryl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157918011|gb|ABV99438.1| seryl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 427

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 15/198 (7%)

Query: 8   LPILQENPRDAEIASH-KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREE 60
           +    E P   ++  H +L    G++           G + +  LG +    +   + ++
Sbjct: 124 VKTFGEPPAIEKVRDHVELSRLLGLVDHERGVKLGGSGFWMYTGLGARLEWALVNWLVDQ 183

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIF 118
               G   +  P L        +G++  +  ++  L DR    +     PT E  +   +
Sbjct: 184 NVAAGYEFLLPPHLLLDSAGFAAGQFPKFHDDVYHL-DRQSAPRGQFLLPTAETAILGAY 242

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +  I     LP   +     +R E         G +R  +F   + + F L PE +  + 
Sbjct: 243 QDEILDTAKLPLKVFAYTPCYRREAAGSHSDERGTVRGHQFNKVEIFQFTL-PEQADAAL 301

Query: 175 NKMFVSYLRIFHRLGLKS 192
             M      +  RLGL  
Sbjct: 302 EAMVAHAEGLVERLGLHY 319


>gi|325286672|ref|YP_004262462.1| seryl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324322126|gb|ADY29591.1| seryl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 423

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 10/210 (4%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +     G   +   G +    + A   ++    G  E+ VP L +      +G+      
Sbjct: 159 VKIAGAGFPVYKGKGARLQRALIAYFLDKNTAAGYQEIQVPHLVNETSGYGTGQLPDKEG 218

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRF 147
           +M  +   +   +   PT E  +T+IFR+ I + ++ P T+      FR E         
Sbjct: 219 QMYHVTADD---LYLIPTAEVPVTNIFRNTIVNQKDFPITYTGYTPCFRREAGSYGAHVR 275

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GD 205
           G+ R  +F   +    +  P+ S  + + M      I   L L    +R   G +G    
Sbjct: 276 GLNRLHQFDKVELVRVEH-PDNSYAALDGMVEHIKDILRELKLPYRLLRLCGGDLGFTSA 334

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           L+ +F V +   +  +  S         + 
Sbjct: 335 LTFDFEVFSTAQDRWLEISSASNFEAYQAN 364


>gi|315142790|gb|ADT80970.1| glutamyl- and prolyl-tRNA synthetase [Myrmekiaphila fluviatilis]
          Length = 126

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+  D  +  YV   S+G+ + R +   +    D  G+
Sbjct: 25  RAIQGATSHHLGQNFSKMFEIVFEHPDTLEKQYVYQNSWGL-SSRSIGVAVMVHGDNAGL 83

Query: 339 IWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSK 374
           + P  VAP ++ ++         ++  ++  + CE +   L +
Sbjct: 84  VLPPRVAPHQVVIVPCGVTANLPESEKKLLAEKCEALEKELRE 126


>gi|289581841|ref|YP_003480307.1| seryl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531394|gb|ADD05745.1| seryl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 459

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 81/239 (33%), Gaps = 19/239 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +++ P D  +  + L     +I +         G Y     G +    +   + +     
Sbjct: 133 MRDLPDDI-VPHYDLGEEMDIIDEARGAKTTGSGFYFLKGDGARLEHALIQFMLDIHREQ 191

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIFR 119
             +++  P   +++    +G+   +  +  RL      D  D+ +   PT E  +T+++ 
Sbjct: 192 DYVDLFPPVPVTSESMRGTGQLPKFADDAYRLGGSNEEDYEDEDLWLCPTAEVPVTNMYA 251

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I    +LP         FR E         G++R  +F   +  +F + PE S     
Sbjct: 252 DDILLKDDLPLKHQAYTPNFRREAGEHGTETRGIVRVHQFNKVELVNF-VEPENSYDRLE 310

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            +      +  +LGL    +   +G        +++  + A   +      +      +
Sbjct: 311 GLLSEAEEVLQQLGLPYRILELCTGDLTFASAKTYDIEIWAPADDMDDGPDEGGRWLEV 369


>gi|289581194|ref|YP_003479660.1| histidyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289530747|gb|ADD05098.1| histidyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 432

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 133/431 (30%), Gaps = 50/431 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
           KG   + P    A       + +     G  E+  P L+ A++W  +SG  D    E+  
Sbjct: 6   KGFRDFYPGEMAARRATIDTLEDTARGYGFREIGTPALERAEMWTDKSG--DDIVDELYA 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +  +   +    S    P  ++  +  +R E   +    R R
Sbjct: 64  FEDQGGRHVTLTPELTPTVARMVVAKQQELS---KPIKWFSTRPFWRYEQVQQ---GRQR 117

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK-MFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEF 210
           EF   +   F  +   +          +       LGL  +    R     I G +   +
Sbjct: 118 EFYQTNVDIFGSSEPEADAEILAWAADAMTN----LGLTGEHFEFRISHRDILGGVLESY 173

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-----APYAATSDVHNE 265
               DT +      K      +   +      ++ +  VE                 + E
Sbjct: 174 DADVDTEDAIRAVDKSDKLSTVEYHDLLIGAGLTADQAVEFDDLIAGGDLEDVREFANTE 233

Query: 266 KLFDSLPENKRVSARGIEVGHIFYF--------GTKYSLPMSATFKGADGKDHYVQMG-- 315
           ++  ++   + V A   + G   +         G  Y   +      + G+      G  
Sbjct: 234 RVDAAVDNLQNVLAAADDFGAREFCTISLETARGLDYYTGVVFECFDSAGEVSRSIFGGG 293

Query: 316 -------SYGIGAMRVVA-----AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                  S+G      V      A +       G +WP         ++ I       R 
Sbjct: 294 RYDTLIESFGGQPTPAVGVAPGHATLSLLCQRAG-VWPAEEVTTDYYVLQIGD----TRT 348

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L + G  V  D  G   GSQ   AD +     VI G + +++ +V IK   +
Sbjct: 349 EAAQITRELRERGHVVETDVAGRSFGSQLNYADSINAETVVIAGEQDLANDEVTIKDMAS 408

Query: 424 GIREDMSLEEV 434
           G +  + +E  
Sbjct: 409 GDQLQVPVESF 419


>gi|124024229|ref|YP_001018536.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166228594|sp|A2CCR1|SYH_PROM3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123964515|gb|ABM79271.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 436

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 129/421 (30%), Gaps = 32/421 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP   +    V ++ R+   R G  E+  P L+  +L+    G   D  GKEM  
Sbjct: 9   GMVDLLPEQTRCWQAVESVARDHFRRAGLQEIRTPLLEVTELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      H       P   +     FR E RP+ G  R R+F
Sbjct: 69  FVDRGDRSCTLRPEGTASVVRAALQHGLL-SQGPQRLWYGGPMFRYE-RPQAG--RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                    +    S      +  + L      GL        +         E +   +
Sbjct: 125 YQIGVEYLGVGSPRSDAEVIALAWALLVDLGVQGLVLEINSLGTLQDRQKYREELVAWLE 184

Query: 216 TGETQVFCSKDFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               Q+        +  P     S+N    +++     + +  +  +       +   ++
Sbjct: 185 ARSDQLDDDSRKRLYTNPLRILDSKNPAISELLQDAPTLFEALSVESKARFEEVQVDLEA 244

Query: 271 LPENKR---VSARGIE-VGHI------FYFGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
           L    +      RG++  GH          G + ++     + G              + 
Sbjct: 245 LQIPFQLNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLVEQLGGAPTPAFGWA 304

Query: 319 IGAMRVVA---AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            G  R++    +    + +G       S  P  + ++N     +        I  +L   
Sbjct: 305 FGMERLMLLLESAASINPNGSAARLTASTRP-DLYVVN---RGEQAERVALVIAHQLRAA 360

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEE 433
           G  V  D  G     QF  A        +++G       +  +K+      +   + +++
Sbjct: 361 GLVVELDSSGSAFNKQFKRAGRSRATWALVIGDDEAERGEARLKYLQEATTQANPIPIDQ 420

Query: 434 V 434
           +
Sbjct: 421 L 421


>gi|257387357|ref|YP_003177130.1| histidyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169664|gb|ACV47423.1| histidyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 436

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 128/439 (29%), Gaps = 62/439 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG     P    A   V   I     + G  E++ P L++ +++V +SG  +   +E+  
Sbjct: 6   KGFRDVYPAEMAAYRQVIDEIETTARQYGFREITTPALEATEMYVDKSG--EEIVEELYH 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +  +   +    S    P  +   +  +R E   +    R R
Sbjct: 64  FEDKGGRDVALTPELTPTVARMVVAKQQELS---KPIKWVSTRPFWRYEQVQQ---GRFR 117

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEFI 211
           EF   +   F  +   +      +    L     LGL       R     I   L   F 
Sbjct: 118 EFHQTNIDIFGSSEPTADAEILAVATDML---TGLGLSADDFDFRVSHRDILTGLLESFE 174

Query: 212 VLADTGETQVF---CSKDFMDFPIPSENTDFDDIISLNSIVEQ----WTAPYAATSDVHN 264
              DT +        +K   D  +         +       E          A      +
Sbjct: 175 ADVDTQDAIRVVDKRAKIDRDEYVEGLTDAGLSLDQAEQFDEWLRAGDDDLDALAEMSGS 234

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYF--------GTKYSLPMSATFKGADGKDHYVQMGS 316
           E++ D++   + V A   + G   Y         G  Y   +      + G+      G 
Sbjct: 235 EQVADAVANLEAVLAAAEDFGVREYCTISLTTARGFDYYTGVVFECFDSTGEVSRAVFGG 294

Query: 317 YGIGAMRVVAAVIESSHDGKGI---------------------IWPDSVAPFKISLINIK 355
                      +IE                             +WP+        ++ + 
Sbjct: 295 GRYDD------LIEGFGGEPTPAVGFAPGVMNSTLPLLLQRAGVWPEEAVSTDYYVLQVG 348

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 R    +I   L + G  V  D      G+Q   AD +     VIVG   + + +
Sbjct: 349 D----TRPVAARIARELRESGHVVEADVSDRSFGAQMGYADSINAETVVIVGENDLENDE 404

Query: 416 VEIKHRLTGIREDMSLEEV 434
           V +K   +G +    ++  
Sbjct: 405 VTVKDMASGEQTTAPVDAF 423


>gi|116075543|ref|ZP_01472802.1| histidyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116066858|gb|EAU72613.1| histidyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 445

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 131/409 (32%), Gaps = 40/409 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP        V A+ R    R G  E+  P L+  +L+    G   D  GKEM  
Sbjct: 9   GMVDLLPEQTCRWQAVEAVARVHFQRWGCREIRTPLLEVTELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             DR D++    P   E    + RS +++          +     FR E RP+ G  R R
Sbjct: 69  FQDRGDRSCTLRP---EGTASVVRSALQNGLLSQGAQRLWYGGPMFRYE-RPQAG--RQR 122

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F         ++   S      +      +   LG++ + +   S     D       L
Sbjct: 123 QFHQIGVEWLGVSSAASDAE---VIALAWDLLADLGVEGLALEINSLGTPDDRLAYRTCL 179

Query: 214 ADTGE---TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY--------AATSDV 262
            +  E    Q+           P    D     +   + E                 + +
Sbjct: 180 VEWLEARRDQLDADSQQRLSTNPLRILDSKHPQTKALLEEAPLLEQSLAPESLARHQAVL 239

Query: 263 HNEKLFDSLPENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGA---DGKDHY-----VQ 313
                     +      RG++  GH  +  T   L   AT  G    DG           
Sbjct: 240 QALDALAIPYQCNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLVQQLGGAATP 299

Query: 314 MGSYGIGAMRVVA---AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              + +G  R++    A   ++ DG+      +  P  + ++N     +    A   +  
Sbjct: 300 AIGWALGMERLLLVLEAAATANPDGRAAQLVQAATP-DVYVVN---RGEQALQAALVLTR 355

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +L   G  V  D+ G   G QF  AD  G    +++G +      V IK
Sbjct: 356 QLRSCGLAVERDESGSAFGKQFKRADRSGAAFALVLGDEEAERGVVRIK 404


>gi|261821270|ref|YP_003259376.1| seryl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261605283|gb|ACX87769.1| seryl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 431

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 80/231 (34%), Gaps = 21/231 (9%)

Query: 20  IASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSV 71
           +  H  +     G+    +    G    +  GQ A     +   + +    + G  E  V
Sbjct: 137 VRDHVELGEMAAGLDFAAAVKLTGARFVVMKGQIARLHRALAQFMLDLHTQQHGYQEAYV 196

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRN 127
           P L +      +G+   +G+++      +++A        PT E  +T++ R  I    +
Sbjct: 197 PYLVNHATLYGTGQLPKFGEDLFHTNPLSEEADSSQYALIPTAEVPLTNLVRDEILDEES 256

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     R   G++R  +F   +     + PE S  +  ++      
Sbjct: 257 LPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI-VRPEDSMQALEELTTHAET 315

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +   L L    +   +G +G   +     E  + A     ++    +  DF
Sbjct: 316 VLQLLKLPYRKVLLCTGDMGFGSTKTYDLEVWLPAQDTYREISSCSNMWDF 366


>gi|157962050|ref|YP_001502084.1| seryl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083587|sp|A8H4R2|SYS_SHEPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157847050|gb|ABV87549.1| seryl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 428

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLR--TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           +  H  +     G+  +++    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 VKDHVELGENIGGLDFKNAVKITGSRFIVMKGQIARMHRALAQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L + D  + +G+   +G+++          + +   PT E  +T++ R  I    NLP
Sbjct: 196 PLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDTIVEEDNLP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     R   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQL-VKPEDSMQALEDLTGHAEVVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            +LGL    M   +G +G   +     E  + A     ++    +  DF
Sbjct: 315 QKLGLPYRTMVLCTGDMGFGSAKTYDIEVWLPAQDTYREISSCSNMQDF 363


>gi|229174003|ref|ZP_04301539.1| Histidyl-tRNA synthetase 1 [Bacillus cereus MM3]
 gi|228609335|gb|EEK66621.1| Histidyl-tRNA synthetase 1 [Bacillus cereus MM3]
          Length = 425

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 140/450 (31%), Gaps = 79/450 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ES  I  +L
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLEVTIQYNNRKLLNGILESINIPTEL 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D        +  D I    +     +        +   
Sbjct: 179 TSDVILSLDKIE-KIGIDGVRKDVLERGITEEMADTIYNTVLSCLKLSINDFKDAFNTPL 237

Query: 267 LFDSLPENKRVSARGIEV--------------GHIFYFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +              G   Y GT Y + +      +       
Sbjct: 238 VADGVNELQQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGLITSSIGSGGR 297

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D   +     S+G+         I ++   K  +     +   + +I + 
Sbjct: 298 YDNIIGAFRGDNMSYPTVGISFGLDV-------IYTALSQKETV----SSTADLFIIPLG 346

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 347 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 395

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + +S   V +++   G    + L  + NY 
Sbjct: 396 EELSTETVMLRNMKEGSEVKVPLSSLSNYL 425


>gi|169835972|ref|ZP_02869160.1| histidyl-tRNA synthetase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 441

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 143/450 (31%), Gaps = 54/450 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +   G   +LP  Q   + +  I+R      G   +  P L+ ++ L  +SG      ++
Sbjct: 7   RIPSGFPEYLPAEQIEFNRLVNIVRRVYEEYGFSPIDTPDLELSEVLLTKSG--GETEQQ 64

Query: 93  MLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           + R     ND  M +  T   V    + +  +S    PF  Y I    R E R + G  R
Sbjct: 65  IYRFIKGSNDLTMRFDLT---VPLARYVAQHESELIFPFRRYHIGKVHRGE-RAQAG--R 118

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--------- 202
            REF   D                 M +   +IF +  +    +   +  I         
Sbjct: 119 FREFYQCDIDVIGSNSVAVDAE---MPIVINKIFEQFDIGEFTVHINNRKILNGFFESLG 175

Query: 203 -------------------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                                  + E   L  + +      +            +  + I
Sbjct: 176 LSNISKDVLRIVDKIDKISANSFTEELERLGLSADQITRLREFININGSKDVILNKLEKI 235

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           SLN   +Q+         V        L +++ +    I  G  +Y GT Y   ++   +
Sbjct: 236 SLNCKSDQFKQGVKEVGLVVKTIRDFGLSDSRFMIDLRIARGLDYYTGTVYETTLNNHPE 295

Query: 304 ---------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                      +   HY +    G+G    ++ +     +   I      +  ++ ++ I
Sbjct: 296 IGSICSGGRYDNLASHYTKKYLPGVGVSIGLSRLFYKLCEIGAIELTRFSSA-EVVVMPI 354

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +       A  +I  RL   G +         +  +   AD +GF   V++G   +   
Sbjct: 355 GSG---QITASVRIAERLRSTGINTMLYTEENNMRKKLKYADKMGFEWVVLIGEDELLTE 411

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +V +K+ LTG    +   E+ ++   +   
Sbjct: 412 EVMLKNMLTGESIRIKSVELDSFLLDKIKK 441


>gi|29828836|ref|NP_823470.1| seryl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|46577432|sp|Q82KS8|SYS2_STRAW RecName: Full=Seryl-tRNA synthetase 2; AltName: Full=Serine--tRNA
           ligase 2; Short=SerRS 2; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 2
 gi|29605941|dbj|BAC70005.1| putative seryl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 427

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +     +      G  E SVP L + D    +G+   +  ++ R     D+ +
Sbjct: 167 GARLERALADFFLDLHTGEHGYTEYSVPFLVNRDTMTGTGQLPKFEDDLFRTQV-GDREL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++    +   R LP+ F      FR E     R   G++R  +F   + 
Sbjct: 226 FLIPTAEVPLTNLVAQQLLDARALPYAFTARTPCFRAEAGAYGRDTRGILRLHQFEKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                 PE +      M         RL L    ++  +G +G   
Sbjct: 286 VRVCA-PEDAPAQLELMVGHAEECLRRLELSYRVVQLPAGDLGFSA 330


>gi|15893319|ref|NP_346668.1| seryl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|30173201|sp|Q97N17|SYS1_CLOAB RecName: Full=Seryl-tRNA synthetase 1; AltName: Full=Serine--tRNA
           ligase 1; Short=SerRS 1; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 1
 gi|15022840|gb|AAK78008.1|AE007515_8 Seryl-tRNA synthetase (serine-tRNA ligase) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507428|gb|ADZ19064.1| seryl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 424

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 10/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V     +    + G  E+  P + +      +G+   + ++  ++   
Sbjct: 167 FYKGLGARLERAVINYFLDTHVEKHGYTEILPPYMVNRVSMTGTGQLPKFEEDAFKV--- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            D      PT E  +T++FR  I    +LP+ F      FR E     R   G++R  +F
Sbjct: 224 -DNGFFLIPTAEVPVTNMFRDEILKAEDLPYKFAAYSACFRSEAGSAGRDTRGLVRQHQF 282

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +   F   PE S     K+      I   L +    +R   G +G
Sbjct: 283 NKVELVKF-AKPEESYDELEKLTHDAEEILQILNIPYRVVRICKGDLG 329


>gi|332828951|gb|EGK01634.1| seryl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 423

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 105/316 (33%), Gaps = 66/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     ++    G +E+  P + +A     +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALINYFLDKAREAGYLEVQPPYVVNAASGYGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   ++ P         FR E     +   G+ R
Sbjct: 223 ATVDD---LYLIPTAEVPVTNIYRDVILEEKDFPVMNTAYSACFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    D  PE S  S  +M      +   LGL    +R      GGD+S    
Sbjct: 280 LHQFDKVEIVRID-KPEHSYQSLKEMVAHVQSLVEELGLPWRILRLC----GGDMS---- 330

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S                Q      ++         + L
Sbjct: 331 ----------FTSALTFDFEVFS--------------AAQQRWLEVSSVSNFESYQANRL 366

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
               R + + I++ H    G+  +LP                         R+VAA++E+
Sbjct: 367 KCRYRDADKKIQLVHTLN-GSALALP-------------------------RIVAALLEN 400

Query: 332 SHDGKGIIWPDSVAPF 347
           +   +GI  PD++ P+
Sbjct: 401 NQTPEGIRIPDALVPY 416


>gi|255726666|ref|XP_002548259.1| seryl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240134183|gb|EER33738.1| seryl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 462

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 80/245 (32%), Gaps = 20/245 (8%)

Query: 18  AEIASHKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A+++ H+++LR  G      +       Y     G      +         +   + +  
Sbjct: 150 AKLSHHEVLLRLDGYDPDRGVRIVGHRGYFLRNYGVFLNQALINYGLSFLAKKDYVPLQA 209

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPF 130
           P + + D+  ++ +   + +E+ ++ D  D+  +   + + +         +S +  LP 
Sbjct: 210 PVMMNKDVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPQEQLPV 269

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +  +G+ R   F   +       PE S   +++M       + 
Sbjct: 270 RYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPEKSWEEFDRMIGCSEEFYQ 328

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LGL    +        G +S E    A              ++      ++  D  S N
Sbjct: 329 SLGLPYRVV--------GIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRN 380

Query: 247 SIVEQ 251
             +  
Sbjct: 381 LEIRC 385


>gi|213019481|ref|ZP_03335287.1| seryl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994903|gb|EEB55545.1| seryl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 433

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 20/233 (8%)

Query: 23  HKLMLRTGMI-HQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQ 75
           ++L  R G++  + +    G    +  GQ A     +   + E   N     E+  P L 
Sbjct: 148 YELGERLGLMDFEQAAKISGSRFTILKGQLAKLGRALINFMLETHVNEFAYTEVYHPALV 207

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +     G+   +  +     D+        PT E V+T++    I   + LP  F   
Sbjct: 208 KNEAMYNVGQLPKFSDDSYLTTDKLR----LIPTSEVVLTNLVADKIIEEKELPIRFTAY 263

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +  S   T + SK    +M  +   I  +L L 
Sbjct: 264 SECFRKEAGSAGRDTRGMIRQHQFGKVELVSI-TTEDQSKDELERMTNAAEEILKKLELP 322

Query: 192 SIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              M   SG +G         E  +       ++    +   F     NT + 
Sbjct: 323 YRIMLLCSGDMGFAAQKTYDIEVWLPEQNKYREISSCSNCGTFQARRMNTKYF 375


>gi|115438430|ref|XP_001218064.1| glycyl-tRNA synthetase 1 [Aspergillus terreus NIH2624]
 gi|114188879|gb|EAU30579.1| glycyl-tRNA synthetase 1 [Aspergillus terreus NIH2624]
          Length = 656

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 63/146 (43%), Gaps = 8/146 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIE---SSHDGKG----IIWPDSVAPFKISLINIKAH 357
            + +++   +     G  R+  ++IE    S +G      + +P  +AP K+ ++ +  H
Sbjct: 491 ENVREYTPNVIEPSFGIGRIFYSLIEHVYWSREGDEARGVLSFPPVIAPTKVLIVPLSTH 550

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   +++  +L ++G     DD    IG ++A  D LG P  + V  + V D+   
Sbjct: 551 -ASFKPLSQRLMMKLRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFT 609

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R +  +   S +E++        
Sbjct: 610 LRDRDSTKQVRASEDEIVQALKSLVE 635



 Score = 51.5 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-YNKMFVS 180
           + +++PF    I   FR+E+ PR G++R REFLM +   F     G KHS + ++   
Sbjct: 236 NNQSMPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHFVDPESGKKHSRFEEVKDL 293



 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G   + N+  + R+        +E+    L   ++   SG  + +   M
Sbjct: 38 SGLYDYGPPGCAVVTNIVDLWRKHFVLEEDMLEVDCTMLTPEEILKTSGHVEKFADWM 95


>gi|45185142|ref|NP_982859.1| ABL088Cp [Ashbya gossypii ATCC 10895]
 gi|44980778|gb|AAS50683.1| ABL088Cp [Ashbya gossypii ATCC 10895]
          Length = 459

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 80/245 (32%), Gaps = 20/245 (8%)

Query: 18  AEIASHKLMLRT-GMIHQHS---KGI--YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           A+++ H+++LR  G   +      G   Y +   G      +           G   +  
Sbjct: 150 AKLSHHEVLLRLDGYDPERGVKISGHRGYFFRNYGVFLNQALINYGLSFLAAKGYCPLQA 209

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPF 130
           P + + ++  ++ +   + +E+ ++ D  D+  +   + + +         +  +  LP 
Sbjct: 210 PVMMNKEVMAKTAQLSQFDEELYKVMDGEDEKYLIATSEQPISAYHSGEWFEKPQEQLPI 269

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +  +GV R   F   +       PE S   ++ M  +    + 
Sbjct: 270 RYVGYSSCFRREAGAHGKDAWGVFRVHAFEKIE-QFCITEPEKSWEEFDSMIANSEEFYQ 328

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LG+    +        G +S E    A              ++      ++  D  S N
Sbjct: 329 SLGIPYRIV--------GIVSGELNNAAAKKYDLEAWFPYQQEYKELVSCSNCTDYQSRN 380

Query: 247 SIVEQ 251
             +  
Sbjct: 381 LEIRC 385


>gi|319740167|gb|ADV60377.1| glu- + pro-tRNA synthetase [Mirina christophi]
          Length = 134

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R ++     + G  +S      +   D ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAVQGATSHHLGQNFSKMFEIVYDDPDTQEKNYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             +   D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRVADIQAIVVPCGITASSTTEERKTLIDSCKALVDDLIAAGVKAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|294496119|ref|YP_003542612.1| seryl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292667118|gb|ADE36967.1| seryl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 502

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 61/213 (28%), Gaps = 35/213 (16%)

Query: 19  EIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           E    + ML  G I +  S+G +   P   K       I+ EE     G  EM  P L  
Sbjct: 182 EKDPTQEMLEKGWIKRGASRGQWIHGPQSTKLFRTFEKIVLEELLEPLGYQEMIFPKLVP 241

Query: 77  ADLWVESGRYDSYGKEMLRL---ADRNDKAMIYGPTH----------------------- 110
            D+W +SG       E+  +     R+ +       H                       
Sbjct: 242 WDVWKKSGHAKGVYPEIYYVCPPKTRDPEYWEEVADHYKVTKEVPTELIKEKIGDPIGGL 301

Query: 111 ----EEVMTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
                       +       + P   +       R E     G+ R  EF   +   +  
Sbjct: 302 CYAQCPPFWMYLQGETIPTESFPLKVFDRSGTSHRYESGGIHGMERVDEFHRIEIV-WLG 360

Query: 166 TPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRA 197
           T E    +  ++   Y+ IF+  L L+      
Sbjct: 361 TKEQVVKASEELHERYMHIFNEILDLEWRKAWV 393


>gi|330815820|ref|YP_004359525.1| Seryl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327368213|gb|AEA59569.1| Seryl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 433

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 81/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQN-RTGAIEM 69
           D E+  H  +    G+  +      G    +  G   +    +   + +    + G  E 
Sbjct: 133 DFEVRDHVDIGTPLGLDFETGAKLSGARFTMLRGPIARLHRALAQFMIDTHTLQHGYTET 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + ++   +G+   +  +M R+    + N        T E  +T+  R  I    
Sbjct: 193 YSPYIVNPEILYGTGQLPKFADDMFRVEKGGEENTVTQYLISTSEITLTNTVRDSIVDAA 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +       P+ S  + ++M     
Sbjct: 253 ALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIAA-PDASYAALDEMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 AILQKLELPYRVITLCTGDMGFSAAKTFDLEVWLPAQNTYREISSCSNTESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           F +      +V 
Sbjct: 372 FRNAQGKPELVH 383


>gi|317403339|gb|EFV83852.1| histidyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 431

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 134/423 (31%), Gaps = 31/423 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP      +    I+R      G   +  P L+   L+    G   D   KEM  
Sbjct: 16  GMNDLLPGPSARWEQFEEIVRGWLRGYGYRNVRTPVLEHTRLFTRGIGEVTDIVEKEMYT 75

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N +++   P     +      H   Y + P   Y I   FR E RP+ G  R R+
Sbjct: 76  FTDALNGESLTMRPEMTAGIVRASIEHNLLY-DRPQRVYSIGPVFRHE-RPQRG--RYRQ 131

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D  +              M     R++  LGL    +R E   +G          A
Sbjct: 132 FHQIDVEALGFAGPDVDAELIVMLA---RLWKLLGLTD--VRLELNSLGQPAERAAHRAA 186

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPE 273
                +        D            + + N  +++           +  E        
Sbjct: 187 LIAHLEKHVDILDEDGKRRLYTNPLRVLDTKNPAMQEMADSAPRLFDFLGEESRAHFDGV 246

Query: 274 NKRVSARGIEVGHIFYF--GTK-YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA---- 326
            +R++  GIE         G   Y+L +        G    V  G    G + ++     
Sbjct: 247 CQRLTDAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGSQGTVCGGGRYDGLIELLGGKPA 306

Query: 327 -AVIESSHDGKGI-IWPDSV---APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            AV  +    + + +W  SV   AP +  +  +   +   R    ++   L   G  V  
Sbjct: 307 PAVGFAIGMERLLDLWEQSVQVEAPAECDVYVVHQGEDAQR-LAARVGEDLRDAGLAVVV 365

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-----HRLTGIREDMSLEEVIN 436
                   SQF  AD  G  + VI+G+  V+     IK      +  G ++ + L  + +
Sbjct: 366 HAGAASFKSQFKRADASGARVAVILGADEVASQTASIKFLRADAQGDGAQQQVPLAGLAD 425

Query: 437 YAS 439
             +
Sbjct: 426 VLN 428


>gi|89902012|ref|YP_524483.1| seryl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|122478532|sp|Q21TF1|SYS_RHOFD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|89346749|gb|ABD70952.1| seryl-tRNA synthetase [Rhodoferax ferrireducens T118]
          Length = 452

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 24/257 (9%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D E+  H  +    G+  +      G    +  G  A     +   + + Q    G  E 
Sbjct: 144 DFEVKDHVDIGTPLGLDFELGVKLTGARFTVMKGLIARLHRALAQFMLDVQTQEHGYTEC 203

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI--------YGPTHEEVMTDIFRSH 121
             P + +A     +G+   +  ++        +A            PT E  +T+  R  
Sbjct: 204 YTPYIVNAQSMRGTGQLPKFEADLFAAKKGGQEAEAAPDNSALYLIPTSEVPLTNFVRDV 263

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + +   LP         FR E     R   G++R  +F   +     + P+ S  +  +M
Sbjct: 264 VLAEAELPVKLTAHTPCFRSEAGSAGRDTRGLIRQHQFDKVEMVQI-VHPDKSYETLEQM 322

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                 I  +LGL    M   +G +G   S     E  + A     ++    +   F   
Sbjct: 323 TGHAEAILQKLGLPYRVMSLCTGDMGFGASKTYDLEVWLPAQNTYREISSVSNCEAFQAR 382

Query: 234 SENTDFDDIISLNSIVE 250
                F +    N +V 
Sbjct: 383 RLQARFKNAQGKNELVH 399


>gi|33593202|ref|NP_880846.1| histidyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33563577|emb|CAE42476.1| histidyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|332382613|gb|AEE67460.1| histidyl-tRNA synthetase [Bordetella pertussis CS]
          Length = 434

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 137/435 (31%), Gaps = 51/435 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP      +    I+R      G   +  P L+   L+    G   D   KEM  
Sbjct: 19  GMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTDIVEKEMYT 78

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N  ++   P     +      H   Y + P   Y I   FR E RP+ G  R R+
Sbjct: 79  FTDALNGDSLTMRPEMTAGIVRASIEHNMLY-DRPHRVYAIGPVFRHE-RPQRG--RYRQ 134

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D  +              M V   R++  LGL+ + +   S              A
Sbjct: 135 FHQIDVEALGFAGPDVDAE---MIVMLARLWKLLGLQDVRLELNS----------LGQPA 181

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    +    +         +      + S    V     P          +LFD L E 
Sbjct: 182 ERAAHRAALIEHLERHQDVLDEDGRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEA 241

Query: 275 KRVSARGI-----EVGHIFYFGTK-------YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            R    G+     + G  +    +       Y+L +        G    V  G    G +
Sbjct: 242 SRSHFDGLCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLV 301

Query: 323 RVVA-----AVIESSHDGKGI-IWPDSV---APFKISLINIKAHDQVCRDACEKIYARLS 373
            ++      AV  +    + + +W  SV    P +  +  +   ++  R    ++  +L 
Sbjct: 302 ELLGGKPTPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGEEGQR-LAARVGEQLR 360

Query: 374 KVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIR 426
             G DV         G +  F  AD  G  + VI+G   V+     IKH          +
Sbjct: 361 DAGLDVIVHAGA--AGFKAQFKRADASGARIAVILGGDEVASRTASIKHLRGPVGADAAQ 418

Query: 427 EDMSLEEVINYASHR 441
           + + L ++ +    +
Sbjct: 419 QQVPLAQLADVLKSK 433


>gi|113970304|ref|YP_734097.1| seryl-tRNA synthetase [Shewanella sp. MR-4]
 gi|114047505|ref|YP_738055.1| seryl-tRNA synthetase [Shewanella sp. MR-7]
 gi|117920498|ref|YP_869690.1| seryl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|122943831|sp|Q0HIS7|SYS_SHESM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123030620|sp|Q0HV57|SYS_SHESR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166223289|sp|A0KWW5|SYS_SHESA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|113884988|gb|ABI39040.1| seryl-tRNA synthetase [Shewanella sp. MR-4]
 gi|113888947|gb|ABI42998.1| seryl-tRNA synthetase [Shewanella sp. MR-7]
 gi|117612830|gb|ABK48284.1| seryl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 428

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           +  H  +     G+  + +    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 VKDHIDLGEGLNGLDFKSAVKITGSRFIVMKGQIARLNRALGQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVELVQL-VKPEDSMAALEALTGHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  +       ++    +  DF
Sbjct: 315 QRLGLPYRTVILCTGDMGFGSSKTYDIEVWLPGQNTYREISSCSNMKDF 363


>gi|270159162|ref|ZP_06187818.1| seryl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289166007|ref|YP_003456145.1| Seryl-tRNA synthetase [Legionella longbeachae NSW150]
 gi|269987501|gb|EEZ93756.1| seryl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288859180|emb|CBJ13112.1| putative Seryl-tRNA synthetase [Legionella longbeachae NSW150]
          Length = 428

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 73/204 (35%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E+ VP + +AD  + +G+   + +++ +L    D    
Sbjct: 170 ARLHRGLIQFMLDLHTQQHGYQEIYVPYIVNADSLLGTGQLPKFEEDLFKLT--GDHGYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  + +  NLP  +      FR E     +   G++R  +F   +  
Sbjct: 228 LIPTAEIPVTNTVRDTLLAEENLPIRYACHSPCFRSEAGSYGKDTKGMIRQHQFEKVE-L 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            +   PE S  +  ++      +  RL L    +   SG +    +     E  + +   
Sbjct: 287 VWITKPEDSYAALEQLVRHAEMVLQRLELPYRVVTLCSGDMSPSAAKTYDIEVWLPSQNT 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +   F        +  
Sbjct: 347 YREISSCSNMEAFQARRMKARYRH 370


>gi|260910053|ref|ZP_05916735.1| glycine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635821|gb|EEX53829.1| glycine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 513

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 119/363 (32%), Gaps = 70/363 (19%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM  L+D   K  +   T + +  +           +PF   QI   FR+E+  R  + R
Sbjct: 201 EMGSLSDAASKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFR 260

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            RE                              F ++ ++           G +L   F 
Sbjct: 261 MRE------------------------------FEQMEMQFFV------APGTELDW-FH 283

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +T        K        +EN  F D   L       +           E      
Sbjct: 284 TWKET------RMKWHQALGFGAENYRFHDHEKLAHYANAASDIEFHMPFGFKEVE---- 333

Query: 272 PENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                    GI     F      K+S      F     + +   +    IG  R+  +V+
Sbjct: 334 ---------GIHSRTDFDLSQHEKFSGKSIKYFDPQTNESYTPYVIETSIGVDRMFLSVM 384

Query: 330 ESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             + + + +           P ++AP K++++ +   D    +   +I   L K   +  
Sbjct: 385 CHAFEEEKLENGETRTVLKLPAALAPIKLAVMPLVKKD-GLPEKAREIVNAL-KFKFNTH 442

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+  + IG ++   D +G P  V V    ++D+ V ++ R T  +E ++++++ N    
Sbjct: 443 YDE-KDTIGKRYRRQDAIGTPYCVTVDHDTLTDNCVTLRFRDTMQQERVNIDQLENIIED 501

Query: 441 RFS 443
           + S
Sbjct: 502 KVS 504


>gi|256371008|ref|YP_003108832.1| seryl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007592|gb|ACU53159.1| seryl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 438

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 9/179 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
                 +  LG + +  +     +        E+  PTL   +  V +G    +  +   
Sbjct: 172 GSMFALYRNLGARLVRALTNFALDAHAEA-FEEIHPPTLVRRETMVATGHLPKFADD-AY 229

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + +R+D   I  PT E  +T ++R  I     LP         +R E     R   G++R
Sbjct: 230 VMERDDLYAI--PTAEVPLTSLYRDEILDLAMLPMRLTAATPCYRREAGSAGRDTRGLLR 287

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             EF   +  +    PE +   + ++      +  RLGL    +   +G +G   +  F
Sbjct: 288 LHEFDKVEILALVA-PEDATSMHLELLGRAEALLQRLGLIYRVVDLCTGDLGQSSARTF 345


>gi|254363199|ref|ZP_04979248.1| histidine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|153095093|gb|EDN75644.1| histidine--tRNA ligase [Mannheimia haemolytica PHL213]
          Length = 423

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 144/427 (33%), Gaps = 47/427 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRND 101
           P        V   +R      G  E+ +P ++S  L+  + G   D   KEM    D ND
Sbjct: 16  PSESPLWQWVEQKVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWD-ND 74

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +   P                Y N     + +   FR E RP+ G  R R+F      
Sbjct: 75  EQLTLRPEGTAGCVRAAIERGWIYNNE-QRLWYMGPMFRHE-RPQKG--RYRQFHQAGVE 130

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------------DLS 207
            F +           + +   R++  LG+    +  +   IG                 +
Sbjct: 131 VFGIANPEIDAE---LIILTARLWKELGIDQ-HVSLQLNSIGSLEARANYRSALVKFLEN 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEK 266
           H  ++  +  E  V      +D    +     +D    L+ + +     +     + +  
Sbjct: 187 HTALMNEEEKERLVKKPLRILDTKNEALQNVLNDAPKLLDYLDDDSREHFTQLCALLDAM 246

Query: 267 LFDSLPENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                   K    RG++     +F       G++ ++     + G       H  Q   +
Sbjct: 247 GIRYEVNPKL--VRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVG 376
            +G  R+V  V E +   K I  P +V    + ++       +      E+I + L  VG
Sbjct: 305 AMGLERLVLLVQEVN---KEIDLPKTV---DVYIVFSGEGATLNAFQLAEQIRSELPHVG 358

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVI 435
                   G +   QF  AD +   + +++G   V++ +V IK  R    +  ++  E+I
Sbjct: 359 VMTHC--SGGKFQKQFKRADKVEAQIALVIGESEVAEKQVVIKDLRSGAEQITIAQSELI 416

Query: 436 NYASHRF 442
              S RF
Sbjct: 417 AELSKRF 423


>gi|152991122|ref|YP_001356844.1| seryl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|166222754|sp|A6Q4S8|SYS_NITSB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|151422983|dbj|BAF70487.1| seryl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 414

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +   + +     G  E+ VP + ++   + +G+   + +++ ++ D +   +   PT 
Sbjct: 175 RALINFMLDHNKEYGFEEVCVPFMANSATLLGTGQLPKFEEDLFKICDED---LYMIPTA 231

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T+++R  I      P         FR E     R   G++R  +F   +  +    
Sbjct: 232 EVPLTNLYRDEIIKDLEDPIKLTAYTPCFRKEAGSGGRDVRGMIRQHQFDKVELVAI-TR 290

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           PE S   +++M      +  +LGL    +   +G +G   
Sbjct: 291 PEESDKVFDEMVKCASSLLAKLGLPHRHVMLCTGDLGFSA 330


>gi|296394225|ref|YP_003659109.1| glycyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181372|gb|ADG98278.1| glycyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 465

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 116/384 (30%), Gaps = 82/384 (21%)

Query: 84  GRYDSYGK-EML------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           G++       M+       +   +    +   T + +  +       + R  PF   QI 
Sbjct: 135 GQWTEPRDFNMMLKTYLGPIESEDGLHYLRPETAQGIFVNFANVVTTARRKPPFGIAQIG 194

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR+E+ P   + R+R                    + +M +                 
Sbjct: 195 KSFRNEITPGNFIFRTR-------------------EFEQMEM----------------- 218

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                       EF V   T        + ++D  +        D  +L           
Sbjct: 219 ------------EFFVEPQTARE---WHQHWIDTRLQWYVDLGIDPENLRLYEHPKEKLS 263

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQM 314
             +    + +       ++     G+     F   T  K+S    + +  A  + +   +
Sbjct: 264 HYSDRTVDIEYRFRFQGSEWGELEGVANRTDFDLSTHAKHSGADLSYYDQAQDRRYVPYV 323

Query: 315 GSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVC 361
                G  R + A +  ++                 +     +AP K +++ +   D   
Sbjct: 324 IEPAAGLTRSLMAFLVDAYAEDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPL-QKDGGL 382

Query: 362 RDACEKIYARLSKV-GCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             A + + ARL K         D  E   IG ++   D +G P  V V  + + D  V I
Sbjct: 383 VAAAKDLAARLRKRWNI-----DYDETQAIGRRYRRQDEIGTPFCVTVDFESLEDQAVTI 437

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  ++ ++L++V  +   R 
Sbjct: 438 RERDTMSQQRVALDQVAAFLFERL 461


>gi|291515571|emb|CBK64781.1| seryl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 423

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 10/186 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +     G +E+  P + +      +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALINYFLDCNTAAGYLEVEPPVMVNEASGFGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N       PT E  +T+I+R  I    + P         FR E     +   G+ R
Sbjct: 223 ATVDN---FYLVPTAEVPVTNIYRDVILEKEDFPVKMTAYTPCFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHE 209
             +F   +     L PE S  + + M      I   LGL    +R   G +     L+++
Sbjct: 280 LHQFDKVEIVQLSL-PEKSYEALDGMVAHVESIVKALGLPYRILRLCGGDMSFTSALTYD 338

Query: 210 FIVLAD 215
           F V ++
Sbjct: 339 FEVYSE 344


>gi|257871024|ref|ZP_05650677.1| histidyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257805188|gb|EEV34010.1| histidyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 437

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 138/443 (31%), Gaps = 37/443 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   +    V    R         E+  P  +  ++   S     D 
Sbjct: 1   MSYQRPKGTNDILPGESEKWQFVEETARLVFRDYQYNEIRTPIFEHFEVIARSVGDTTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-----NLPFTFYQIQLKFRDEL 143
             KEM    D+ ++ +   P   E    I RS++++       N P+  + I   FR E 
Sbjct: 61  VSKEMYDFYDKGERHVTLRP---EGTAPIARSYVENKLFGPEYNKPYKVFYIGPMFRYE- 116

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RP+ G  R R+F      +F      +      M    +  F +LGL  +  R     +G
Sbjct: 117 RPQKG--RLRQFHQIGVEAFGSANPATDVETMAM---AMDFFKQLGLSQL--RLVINSLG 169

Query: 204 GDLSHEFIVLA-----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              + +    A        E ++           P    D  D      + +  +     
Sbjct: 170 DKETRKNYRQALIDYLSPHEAELSEDSKRRLHENPLRVLDSKDKRDQQFVADAPSILDYL 229

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEV----GHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           + +            +       I+     G  +Y  T + +   A   GA  +      
Sbjct: 230 SPEAKAHFETVITMLDALDIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGA--QATICAG 287

Query: 315 GSYGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDA-------CE 366
           G Y      +            G+     ++   ++ +  +   D               
Sbjct: 288 GRYDHLVEELGGPQTPGFGFAMGLERLLITMEAEEVVIPALNELDAYVVGLGEATNLEAL 347

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   +   G     D M  +  +QF  AD  G  L + +G   +++  + IK   + I 
Sbjct: 348 KVVQAIRNFGFSADRDFMNRKAKAQFKSADKQGARLVLTLGENELAEQVINIKSMASRIE 407

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
           +   L ++ ++    +     +L
Sbjct: 408 KQFKLADLYDHFDEIYDEMTTIL 430


>gi|212212368|ref|YP_002303304.1| histidyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|229558652|sp|B6IZN1|SYH_COXB2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|212010778|gb|ACJ18159.1| histidyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 421

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 146/438 (33%), Gaps = 53/438 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        +    R   +     E+  P ++   L+  + G   D   K
Sbjct: 6   QAIRGMSDTLPEEIPYWSFLENACRSVVSAYHYREIRFPVVEQTALFKRTIGEATDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            +   Y  +    + +   FR E RP+ G  R
Sbjct: 66  EMYTFTDRNGDSLTLRPEGTAGCVRAGIQNGLFYNQI-QRLWYLGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F      ++ +     +     M    LR++  LGL+S  +  E   +G   S    
Sbjct: 122 YRQFYQLGVETYGMAGAPIEAELIFMC---LRLWKALGLES-CIHLELNTLGTLDSRNAY 177

Query: 212 VLA----------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             A          +  E             + S+N D   +++    +  +    +    
Sbjct: 178 RQALVTYLQSREKELDEDSRRRLHTNPLRILDSKNPDLQPLLAEAPKLIDYLDETSRRHF 237

Query: 262 VHNEKLFD---SLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKG----ADG 307
                L D             RG++              G + ++     +        G
Sbjct: 238 DQLRSLLDQAEVPFIVNPTLVRGLDYYTHTVFEWVTDQLGAQGTVCAGGRYDNLVELLGG 297

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---A 364
           K       + G+  + ++   ++   D             KI +  + A + V ++    
Sbjct: 298 KSTPAAGFAAGLERLVLLLRGVQECLD-------------KIDIYVVIAGEAVIQEGLLM 344

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLT 423
            E++   L +   +   D  G  + SQF  AD  G    +++G + +  + V +KH R T
Sbjct: 345 TEQLRNVLPEWVIEA--DLSGSSLKSQFKRADKSGAKWALVIGEEEIKTNTVTLKHLRET 402

Query: 424 GIREDMSLEEVINYASHR 441
             +++++ + +I+Y    
Sbjct: 403 VPQKNLTRDTLISYLKSE 420


>gi|46581769|ref|YP_012577.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|50403648|sp|P62379|SYH_DESVH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46451192|gb|AAS97837.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232328|gb|ADP85182.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 417

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 142/432 (32%), Gaps = 57/432 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY--GKEML 94
           KG     P        + ++ R+   R G +E+  P L+  DL+  S   ++    KEM 
Sbjct: 8   KGFADLFPPESDVFTRMESVARQVFGRYGFVELRTPILERTDLFCRSIGTETDVVQKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR D+++   P     +   +    +  +      +     FR E RP+ G  R R+
Sbjct: 68  TFPDRKDRSLTMRPEATAGVMRAYIESGRHTQEPVSKLFTSGPMFRYE-RPQKG--RMRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSH 208
           F   +          +      M    +R    LGL  + ++  S       P+      
Sbjct: 125 FHQINCEVLGPVEPHADAELVLML---MRFLTELGLTGLSLQINSLGCKECRPLYRKALS 181

Query: 209 EFIVLADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +F+   D     E      +      +  +     ++ +    + +   P   T      
Sbjct: 182 DFLASIDNAALCEDCRRRMETNPLRVLDCKVPGCRELTANAPTILEHNCPECRTHFDAVL 241

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV- 324
           ++ DS      ++ R +  G  +Y  T + +   +   G+ G       G Y     ++ 
Sbjct: 242 RILDSRNVPYVLNDRLV-RGLDYYNRTTFEVVSDS--IGSQGS--VAGGGRYDGLISQLG 296

Query: 325 --------VAAVIESSHDGKGIIWPDSVAP---FKISLINIKAHDQVCRDACEKIYARLS 373
                    A  +E       ++ P + AP   F ++++     D   +DA   +   L 
Sbjct: 297 GPDVPGVGFACGMERLA----LMMPGADAPRPHFHVAVL-----DPAAQDAALLLAEDLR 347

Query: 374 KVGCDVFWDDMGEQIGS-------QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             G           +G        +  +A   G    +I+G   ++   V +K   +G +
Sbjct: 348 AQGL-------TGSVGFGAGSIKSRMRLAGKSGARACLILGGDELAAGTVVVKDMDSGEQ 400

Query: 427 EDMSLEEVINYA 438
           E +  + V    
Sbjct: 401 ETIGRDAVAARL 412


>gi|307946877|ref|ZP_07662212.1| seryl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307770541|gb|EFO29767.1| seryl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 425

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 71/226 (31%), Gaps = 17/226 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +      G  E+S P L        + +   + +++
Sbjct: 162 SGSRFVVLKGQIARLERALGQFMIDTHTQEHGYTEVSPPLLVHDKPLFGTSQLPKFEEDL 221

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D         PT E  +T++    I     LP     +   FR E     R   G+
Sbjct: 222 FKTGD-----HYLIPTAEVPLTNLVADQILIDEALPVRVSALTYCFRSEAGSAGRDTRGM 276

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GD 205
           +R  +F   +  S    PE S +   +M      I  +LGL    M   +G +G      
Sbjct: 277 LRQHQFQKCELVSV-TKPEDSLNELERMLGCAETILQKLGLHYRVMTLCTGDMGFGARKT 335

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              E  +       ++       DF     N  F       ++   
Sbjct: 336 YDIEVWLPGQDTYREISSCSVCGDFQARRMNARFRPQGEKQTVHVH 381


>gi|260593112|ref|ZP_05858570.1| serine--tRNA ligase [Prevotella veroralis F0319]
 gi|260534912|gb|EEX17529.1| serine--tRNA ligase [Prevotella veroralis F0319]
          Length = 429

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 110/316 (34%), Gaps = 65/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + D  + +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQDSGLGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    D  PE S  S ++M      +  +L L    +R      GGD+S    
Sbjct: 281 LHQFDKVEIVRID-KPEHSYESLDEMLNHVEGLLKKLELPYHILRLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S   +    +S  S  E + A        H E      
Sbjct: 332 ----------FTSAICYDFEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHAED----- 376

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + IE+ H    G+  +LP                         R+VAA+IE+
Sbjct: 377 --------KKIELCHTLN-GSALALP-------------------------RIVAAIIEN 402

Query: 332 SHDGKGIIWPDSVAPF 347
           +   +GI  P  + P+
Sbjct: 403 NQTPEGIRVPKVLVPY 418


>gi|304383920|ref|ZP_07366377.1| glycyl-tRNA synthetase beta subunit [Prevotella marshii DSM 16973]
 gi|304334998|gb|EFM01271.1| glycyl-tRNA synthetase beta subunit [Prevotella marshii DSM 16973]
          Length = 585

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/480 (13%), Positives = 146/480 (30%), Gaps = 83/480 (17%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +   G +  +N+     +         + +         +W  SG  D++      L
Sbjct: 106 VYDYGQNGVELKNNIKEYWWKSMVLLHENIVGIDSAIFMHPTVWKASGHVDAFND---PL 162

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D  D    Y      +   I +   K  + +     +    F DE + R    R  E  
Sbjct: 163 IDNRDSKKRYRADV-LIEDQIAKYEEKIDKEVAKAAKKFGDSF-DEAKFRTTNPRVLEHQ 220

Query: 157 MK-----------------DAYSFDLTPEGSKH------------SYNKMF--------V 179
            K                 +A    +  E                 +N MF         
Sbjct: 221 KKRDALHERYAQAMQGPDLEALKQIIIDEEITDPISGTKNWTDVRQFNLMFSTEMGSLSD 280

Query: 180 SYLRIFHR------LGLKSIPMRAESGP--------IGGDLSHEFIVLADTGETQVFCSK 225
           +  +I+ R      + +  + ++             IG    +E +        + F   
Sbjct: 281 ATNKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQM 340

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWT-----APYAATSDVHNEKLFDSLPENKRVSAR 280
           +   F  P    ++ +      +    T       Y            ++  + +     
Sbjct: 341 EMQFFVKPGTELEWFETWKKTRMKWHQTLGFGAENYRFHDHEKLAHYANAASDIEFRMPF 400

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESS 332
           G +     +  T + L     F G +         + +   +    IG  R+  +V+  +
Sbjct: 401 GFKEVEGIHSRTNFDLSQHEKFSGKNIKYFDPQTNESYTPYVIETSIGVDRMFLSVMCHA 460

Query: 333 HDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ + +           P  +AP K++++ +   D    +   +I   L +   +  +D+
Sbjct: 461 YEEEQLQSGDTRTVLKLPAPLAPVKLAVMPLVKKD-GLPEKAREIVDAL-RFKFNTHYDE 518

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               IG ++   D +G P  V +    + D+ V ++ R T  +E + ++ + +    + S
Sbjct: 519 KDA-IGKRYRRQDAIGTPYCVTIDHNTLQDNCVTLRFRDTMEQERVGIDRLESIIEDKVS 577


>gi|228928378|ref|ZP_04091419.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228831425|gb|EEM77021.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 425

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 144/450 (32%), Gaps = 79/450 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMSMAF-ELFQTLNLEVTIQYNNRKLLNGILQAINIPTEL 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +     +        +N  
Sbjct: 179 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPL 237

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 238 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGR 297

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  +     +   + +I + 
Sbjct: 298 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETV----SSTADVFIIPLG 346

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 347 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 395

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + +    V +++   G    + L  + NY 
Sbjct: 396 EEICTETVMLRNMKEGSEVKVPLSSLSNYL 425


>gi|42560881|ref|NP_975332.1| histidyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|54039667|sp|P62372|SYH_MYCMS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|42492378|emb|CAE76974.1| histidine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320579|gb|ADK69222.1| histidine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 414

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 137/427 (32%), Gaps = 36/427 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G   +     K  + V   ++E  ++    E+  P  +S +L++ S G   D   K
Sbjct: 3   QKPRGTQDFFLDEAKLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGSTTDIVSK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D+ +++++  P     +   +  + + +  NLP   Y I   FR E RP+ G  
Sbjct: 63  EMYEFVDKKNRSLVLKPEGTASVVRAVIENKLYAEENLPLKVYYISPMFRYE-RPQNG-- 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R+F       F       +  Y  +     +I ++  L        +  I G    ++
Sbjct: 120 RYRQFHQLGIEVFGSD--SIQQDYE-VLNIATKIINQFKLNKNIKIYTNFLITGKNREDY 176

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+      +      D       +     D  I         +        +  E+    
Sbjct: 177 ILELKKYLSDFKLCNDCNTRLEKNPLRVLDCKIDDKQFKNVPS----MQDFLTKEQKTRY 232

Query: 271 LPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
               +      I V H      G  Y         +   + +   +  G Y      +  
Sbjct: 233 DQTLELFKKTNISVIHDDKLVRGLDYYTGFIFEIKYLNNNNEQTIIAGGRYNNLVNEIGN 292

Query: 327 AVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             + +   G G+  + + +     SL+N K +  +     + +   L++       D   
Sbjct: 293 INLAACGFGMGLERFINIIKEQNSSLVNQKTNIDLYTICIDDLAIELNQQ----ILDLTR 348

Query: 386 EQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             IG +                AD L     +I+GS     ++  IK ++   +   +L 
Sbjct: 349 -SIGLKADSNYYHLSLKSALKKADKLNPKYVIILGSNEAKTNEFIIKDQINKTQIKTTLT 407

Query: 433 EVINYAS 439
           + I    
Sbjct: 408 KFIKDLK 414


>gi|116754243|ref|YP_843361.1| histidyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|116665694|gb|ABK14721.1| histidyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 470

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           M+ Q  +G   + P        V   + +   R G  E++ PT +  +L+  +SG  +  
Sbjct: 14  MMIQRPRGTRDFPPEEAYRRRAVREKMIDVMERWGYREVATPTFEHLELFTLKSG--EGV 71

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +E+    D+  + +   P     +  ++ S + S    P   Y     FR E RP+ G 
Sbjct: 72  IEEIYSFKDKGGRDIALRPELTAPVMRMYVSELHS-SPKPLRLYYFANCFRYE-RPQKG- 128

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            R REF              S+     M    LR
Sbjct: 129 -RFREFWQLGCELIGGRRPDSEAEVIAMADEVLR 161


>gi|332969950|gb|EGK08950.1| histidine--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 430

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 132/436 (30%), Gaps = 43/436 (9%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           I++   + G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAYWQAFENQIQKWTRKFGYSQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             D  GKEM   +D ND  ++   P            H   + + P   + +   FR E 
Sbjct: 66  ETDVIGKEMYTFSDSNDTLSLTLRPEGTASCLRAVVEHNLLH-DAPRKLWYMGAMFRRE- 123

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR---IFHRLGLK-----SIPM 195
           RP+ G  R R+F      +              M     R   I   L L+     +   
Sbjct: 124 RPQKG--RYRQFHQVGIEALGFADADIDAEIIAMCADLWRELGILEHLTLELNSLGNREE 181

Query: 196 RAESGP--------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           RA                LS E  V  +    ++  +K+     I +      D +  +S
Sbjct: 182 RAAHRAALVEYFSQYTDKLSDEEKVRLEKNPLRLLDTKNPDLQEICNNAPRLVDFLGEDS 241

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--A 305
                T                 L        + +        G + ++     + G   
Sbjct: 242 QKHYQTVKSLLDGLGIQYVENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +          + +G  R++  ++   +         S+       + +         A 
Sbjct: 302 ELGGKPAASIGFAMGIERLL--LLVRDYG--------SLQVSDAPDVFVMQQGDGATLAA 351

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG 424
            K+   L + G +V       ++ +QF  AD  G    +I+     +++ V IK  R   
Sbjct: 352 MKLAQNLRENGFNVAQFSGSTKLKNQFKRADQSGARFGLIIAESEAAENTVTIKDLRGEN 411

Query: 425 IREDMSLEEVINYASH 440
            +  +   ++I+    
Sbjct: 412 GQITVPAAQMISQIKE 427


>gi|315608195|ref|ZP_07883187.1| serine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250164|gb|EFU30161.1| serine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 429

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 8/171 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +L    +    + A   EE  + G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPVYLGKMARFQRALEAFFLEEARKAGYLEVQPPFVVNQASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   +    D TPE S  S N+M      +  +L L    +R   G +
Sbjct: 281 LHQFDKVEIVRID-TPEHSYDSLNEMLNHVEGLLQKLELPYHILRLCGGDM 330


>gi|319426384|gb|ADV54458.1| seryl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 428

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           I  H  +     G+  + +    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 IKDHIDLGEGLNGLDFKSAVKITGSRFIVMKGQIARLNRALGQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVELVQL-VKPEDSMAALETLTNHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  +       ++    +  DF
Sbjct: 315 QRLGLPYRTVVLCTGDMGFGSSKTYDIEVWLPGQNTYREISSCSNMKDF 363


>gi|120598819|ref|YP_963393.1| seryl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|166223290|sp|A1RJJ4|SYS_SHESW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|120558912|gb|ABM24839.1| seryl-tRNA synthetase [Shewanella sp. W3-18-1]
          Length = 428

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           I  H  +     G+  + +    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 IKDHIDLGEGLNGLDFKSAVKITGSRFIVMKGQIARLNRALGQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVELVQL-VKPEDSMAALETLTNHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  +       ++    +  DF
Sbjct: 315 QRLGLPYRTVVLCTGDMGFGSSKTYDIEVWLPGQNTYREISSCSNMKDF 363


>gi|146293103|ref|YP_001183527.1| seryl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166223288|sp|A4Y6Z5|SYS_SHEPC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|145564793|gb|ABP75728.1| seryl-tRNA synthetase [Shewanella putrefaciens CN-32]
          Length = 428

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           I  H  +     G+  + +    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 IKDHIDLGEGLNGLDFKSAVKITGSRFIVMKGQIARLNRALGQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVELVQL-VKPEDSMAALETLTNHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  +       ++    +  DF
Sbjct: 315 QRLGLPYRTVVLCTGDMGFGSSKTYDIEVWLPGQNTYREISSCSNMKDF 363


>gi|329770181|ref|ZP_08261572.1| seryl-tRNA synthetase [Gemella sanguinis M325]
 gi|328837082|gb|EGF86724.1| seryl-tRNA synthetase [Gemella sanguinis M325]
          Length = 426

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 82/263 (31%), Gaps = 22/263 (8%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G      +   + +      G  E  VP L +      +G++  + +++  + 
Sbjct: 163 FVFYKKAGALLERALINFMLDIHVTEHGYEEYMVPQLVNRTALFGTGQFPKFVEDVYTVE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                 +   PT E  +T+ +   I S   LP       + FR E     R   G++R  
Sbjct: 223 SEG---LTLIPTAEVPLTNYYNDEILSEDMLPKGVTAFSICFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F   PE S      M      I  +L L    +   SG  G   +     E
Sbjct: 280 QFNKVEMVRFS-KPENSYEQLEIMTGHAENILKKLNLPYRVITLCSGDTGFSSAKTYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW---------TAPYAATS 260
             + +     ++    +  DF     N  F    +                     A   
Sbjct: 339 VWLPSYNAYKEISSCSNCTDFQARRANMRFKREDTGKVEFIHTLNGSGLAVGRCLAAIIE 398

Query: 261 DVHNEKLFDSLPENKRVSARGIE 283
           +  NE    ++PE  R   RG+E
Sbjct: 399 NYQNEDGSITVPEVLRPYMRGLE 421


>gi|58617193|ref|YP_196392.1| seryl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|81311339|sp|Q5FGY8|SYS_EHRRG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|58416805|emb|CAI27918.1| Seryl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 425

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 51  DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G  E+S P L         G+   +  +  +  D         PT
Sbjct: 173 RALANFMLDVHTQEFGYSEISHPVLVHESAMYGVGQLPKFADDSFKTTDN----FRLIPT 228

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++  +   +   LP         FR E     +   G+MR  +F   +  S  +
Sbjct: 229 SEVALTNLVSNANINANELPIRLTACSQCFRSEAGSAGKDVRGMMRQHQFNKVELVSI-V 287

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----HEFIVLADTGETQV 221
           T E S+    +M      I  +L L    M   +G +G   S     E  + +     ++
Sbjct: 288 TEEQSELELERMTQVAEEILKKLELPYRVMMLCTGDLGFSASITYDIEVWIPSQNQYREI 347

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               +   F     N  +  I + N + +   
Sbjct: 348 SSCSNCKAFQARRMNAKYHTISNGNKVNKFVH 379


>gi|73541773|ref|YP_296293.1| histidyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|83305877|sp|Q46ZI4|SYH_RALEJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|72119186|gb|AAZ61449.1| histidyl-tRNA synthetase [Ralstonia eutropha JMP134]
          Length = 456

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 134/444 (30%), Gaps = 67/444 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
           KG+   LP      ++     R      G  ++  P ++   L+V   G   D   KEM 
Sbjct: 29  KGMNDMLPADAPLWEHFENAARAMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMY 88

Query: 95  RLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              D  N + +   P            H   Y + P   +     FR E RP+ G  R R
Sbjct: 89  SFTDALNGEQLTLRPEGTAAAVRATIEHNLLY-DGPKRLWYTGPMFRHE-RPQRG--RYR 144

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM----------RAESGPIG 203
           +F    A +              M     R++  LGL  + +          RA      
Sbjct: 145 QFHQLGAEALGFAGPDVDAEIILMCQ---RLWDDLGLTGVRLEINSLGQAHERAAHREEL 201

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F  + D    +   +         +         +   I        A    V 
Sbjct: 202 IKYLEGFKDILDEDGKRRLYTNPLRVLDTKNPALQEMAANAPKLIDFLGEESLAHFEGVQ 261

Query: 264 NEKLFDSLPE-NKRVSARGIEVGHIFYF---------------GTKYSLPMSATFKGADG 307
                +++P        RG++  ++  F               G +Y  P+ A      G
Sbjct: 262 RLLKANNIPYKINPRLVRGLDYYNLTVFEWITDKLGAQGTIAGGGRY-DPLIAQMG---G 317

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K        + +G  R++  + E        + PD+V    + L++     +  +     
Sbjct: 318 KAAPA--CGWAMGIERIIELIREEG------VVPDAVG-CDVYLVH---QGEAAQQQATV 365

Query: 368 IYARLSKVGCDVFW----DDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              RL   G DV      D  G+    +     AD  G    VI+G   V+   V++K  
Sbjct: 366 AAERLRDAGLDVVLHATPD--GKSGSFKSQMKRADASGAAYAVIIGEDEVAAGVVQVKEL 423

Query: 422 L-------TGIREDMSLEEVINYA 438
                    G +  +  E +++Y 
Sbjct: 424 RQGAQAEGGGQQAQVPAENLVDYL 447


>gi|188584655|ref|YP_001916200.1| seryl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229890228|sp|B2A2Z8|SYS_NATTJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|179349342|gb|ACB83612.1| seryl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 422

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
             +++    +    +   + +      G +EM  P + + D    +G+   +  +M +L 
Sbjct: 161 FVNYVGDAARLERALIDFMIDVHVTEHGYVEMMPPFIANRDSMTGTGQLPKFEDDMYKLE 220

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D         PT E  +T+++R  I     LP         FR E     R   G++R  
Sbjct: 221 DM---EYFLIPTAEVTLTNLYRDEILPGDFLPRYLVAFTPCFRKEAGAHGRDTRGLIRQH 277

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +   F + PE S    + +  +  R+   L L        +G +G   + ++
Sbjct: 278 QFNKVEMVKF-VEPEKSYQELDSLVANAERVLQLLELPYQISLMCTGDLGFAAAKKY 333


>gi|86134826|ref|ZP_01053408.1| Seryl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821689|gb|EAQ42836.1| Seryl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 424

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 92/317 (29%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     ++    G  E+ VP L +      +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINYFLDKNTAAGYKEVQVPHLVNTASATATGQLPDKDGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T++FR  +    + P         FR E         G+ R
Sbjct: 224 STVDD---LYLIPTAEVPITNMFRGDLVQESDFPIALTGYTPCFRREAGSYGAHVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    +  PE S  + + M      I   L L    +R   G  G        
Sbjct: 281 LHQFDKVEIVRVEH-PENSYKALDGMVEHIKNILRELKLPYRILRLCGGDTG-------- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S   D                                 
Sbjct: 332 ----------FTSALTFDFELFSTAQDRW------------------------------- 350

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                     +E+     F T  +  +   FK  +GK      +    +   RV+A ++E
Sbjct: 351 ----------LEISSASNFETFQANRLKLRFKNKEGKSELAHTLNGSSLALPRVLAGILE 400

Query: 331 SSHDGKGIIWPDSVAPF 347
           +     GI  P+ + P+
Sbjct: 401 NYQTENGIQVPEVLIPY 417


>gi|288925843|ref|ZP_06419774.1| serine--tRNA ligase [Prevotella buccae D17]
 gi|288337498|gb|EFC75853.1| serine--tRNA ligase [Prevotella buccae D17]
          Length = 429

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 8/171 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +L    +    + A   EE  + G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPVYLGKMARFQRALEAFFLEEARKAGYLEVQPPFVVNQASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   +    D TPE S  S N+M      +  +L L    +R   G +
Sbjct: 281 LHQFDKVEIVRID-TPEHSYDSLNEMLNHVEGLLQKLELPYHILRLCGGDM 330


>gi|269114991|ref|YP_003302754.1| glycyl-tRNA synthetase [Mycoplasma hominis]
 gi|268322616|emb|CAX37351.1| Glycyl-tRNA synthetase [Mycoplasma hominis ATCC 23114]
          Length = 458

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/435 (13%), Positives = 144/435 (33%), Gaps = 49/435 (11%)

Query: 40  YSWLPLGQKALDNVNAII-REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           + + PL    +  +     RE   + G +++    + +  +W  SG  D++      L +
Sbjct: 36  WDYGPLAVNIMTAIKKYWVREFIAKEGNVQIDSKIIMNPKVWKASGHLDNFSD---FLIE 92

Query: 99  RNDKAMIYGPTHEEVMTDIFRS---HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                  Y   H  ++ D+F        ++  L     +   ++ D  +  +  +R   F
Sbjct: 93  NKLNQKRYRADH--IVKDLFPEINVEKATFEELEEIIKEKVKEY-DGSKTEWSSIRP--F 147

Query: 156 LMKDAYSFDLTPEGSKHSYNK------MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            +            +  +Y +      +F+++  +          +    G IG    +E
Sbjct: 148 NLMFKTQMGAIDTAANQTYLRPETAQGIFINFKNVLRT---TRAKLPFGIGQIGKSFRNE 204

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT---APYAATSDVHNEK 266
                    T+ F   +   F  PS++  F        +                 H ++
Sbjct: 205 ITPRDFIFRTREFEQMELEYFCNPSDDEKFYHYWIKKCVDFVTLLGLKSENIRIRPHEKE 264

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGT----KYSLPMSATFKGA-------DGKDHYVQMG 315
                 +           G     G      Y L     +          DG      + 
Sbjct: 265 ELSHYSKGTSDIEYLFPFGWGELLGIANRGNYDLSQHMKYSNESLEYLLDDGTKIIPHVI 324

Query: 316 SYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLIN-IKAHDQVCRDAC 365
              IG  R++ A++  S++ + +             ++AP+++++   +K  +   ++  
Sbjct: 325 EPSIGLDRLLLALLVDSYEEQELENNDVRIVLKLDFNIAPYQVAIFPLMKKLNSKAKEIF 384

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +   L K    + +D+ G  IG ++   D +G P  V +    +  + V ++ R +  
Sbjct: 385 DNL---LQKTELRLIYDESG-SIGKRYRRQDAIGTPFAVTIDFDTLEKNTVTVRERDSMK 440

Query: 426 REDMSLEEVINYASH 440
           +  + L+ +I +  +
Sbjct: 441 QHVVELDNLIKFFEN 455


>gi|121712626|ref|XP_001273924.1| glycyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119402077|gb|EAW12498.1| glycyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 699

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 8/149 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIE---SSHDGKG----IIWPDSVAPFKISLINIKAH 357
            + +++   +     G  R++ ++IE    S +G      + +P  +AP K+ ++ +  H
Sbjct: 534 ENIREYTPNVIEPSFGIGRILYSMIEHVYWSREGDEARGVLSFPPVIAPTKVLIVPLSTH 593

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R   +++  +L ++G     DD    IG ++A  D LG P  + V  + V D+   
Sbjct: 594 -ASFRPLLQQLMTKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFT 652

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R T  +   S EE++          +
Sbjct: 653 LRDRDTTKQVRASEEEILQAIKSLVDGEK 681



 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           +PF    I   FR+E+ PR G++R REFLM +   + + PEG
Sbjct: 283 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHY-VDPEG 323



 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y + P G   L+N+  + R+        +EM    L   ++   SG  D +   M
Sbjct: 81  SGLYDYGPPGTALLNNIVDVWRKHFVLEEDMLEMDCTMLTPHEILKTSGHVDKFADWM 138


>gi|262305791|gb|ACY45488.1| glu- + pro-tRNA synthetase [Scolopendra polymorpha]
          Length = 134

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RG++     + G  +S      ++  +  +  +V   S+G+ + R + A+I    D  
Sbjct: 15  SGRGLQGATSHFLGQNFSKMFEIMYEDPETSEKKFVFQNSWGL-STRSIGAMIMIHGDNT 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  ++ +I         +    V    C+     L+K       D       
Sbjct: 74  GLVLPPRVASVQVIIIPCGITVNLPEEEKAVLNKKCQDYERFLNKENIRCQGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|157413040|ref|YP_001483906.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|157387615|gb|ABV50320.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 450

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 137/434 (31%), Gaps = 67/434 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP       NV  I+ E+ +R    E+  P L+  +L+V       D   KEM  
Sbjct: 33  GTVDLLPNELIKWQNVEKILLEQLSRASIKEIRTPILEMTELFVRGIGEGTDVVSKEMYT 92

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +         S   L   +Y +   FR E RP+ G  R R+F
Sbjct: 93  FLDRGERSCTLRPEGTASVARALIQSGISSNPLQKLWY-MGPMFRYE-RPQAG--RQRQF 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                         S  S  ++      I  +LG+K + +             E   L +
Sbjct: 149 HQLGVEFIGHD---SVRSDIEIIALAWDILDKLGIKELNL-------------EINTLGN 192

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T +   F         I   N D  D+ S N I         + +    + L ++     
Sbjct: 193 TNDRSNFQKSFLNWLEI---NKDSLDLDSQNRITRNPLRILDSKNIQTKKALENAPRLFN 249

Query: 276 RVSAR----------GIEVGHI-----FYF--GTKY-----------SLPMSATFKGADG 307
            +S R           +EV  I     F    G  Y           +L   AT  G  G
Sbjct: 250 FLSERSLKRYSDLKKQLEVLKIPYVENFNLVRGLDYYTHTAFEITSGALGSQATVCGG-G 308

Query: 308 KDHYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +   +     G      +   I         GK +  P +     I +IN      +   
Sbjct: 309 RYDDLIKHMGGPN-TPAIGFAIGLERLILLAGKELEVPRN---TDIYIINQGL---IAES 361

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  +L K    V  D  G     QF  A+ L     +++G    +  +  I+    
Sbjct: 362 LAMDLSRKLRKHDLIVELDLSGSTFSKQFKKANKLKSKSIIVIGDDEAAKREFLIRLFD- 420

Query: 424 GIREDMSLEEVINY 437
                 + EEVI++
Sbjct: 421 -QSGKRNKEEVISF 433


>gi|307354508|ref|YP_003895559.1| histidyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157741|gb|ADN37121.1| histidyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 405

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 116/392 (29%), Gaps = 45/392 (11%)

Query: 64  TGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+  PT ++ +L+  +SG  +    EM    D+  + +   P     +  ++ +  
Sbjct: 33  FGYHEVLTPTFENQELYTIKSG--EGIIGEMYTFEDKGGRKLALRPEGTAAILRMYVNEA 90

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           K     P  +  +   +R E RP+ G  R R+F    +                +    L
Sbjct: 91  KV-LPKPIRWCYLLDCYRYE-RPQKG--RYRQFWQFGSELIGADTAAGDAEIILLADGLL 146

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG-ETQVFCSKDFMDFPIPSENTDFDD 241
           R     G++         P+         +L D G E +                   +D
Sbjct: 147 R---AAGVRFSLQVGHLAPMK-------HILLDLGEEDKKRVMALLDKRSFDELEACLND 196

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI----EVGHIFYF----GTK 293
                   +        T D   E   D     +     GI    ++ +        G  
Sbjct: 197 TGKPELYDKLTALIECTTIDEAKEVCGDFPGMERMEEMLGILDSQKLEYSLNLGIVRGLD 256

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF--KI-- 349
           Y   M       +       +G        +     E +      I  D V     ++  
Sbjct: 257 YYTGMVFEGFAENLGAENQIIGGGSYRLAHLFGG--EDTPSCGFGIGFDRVMVSRGEVEL 314

Query: 350 ---SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF----AVADLLGFPL 402
               L+ I    +  +    ++   L + G     + +   +G+Q       A       
Sbjct: 315 KRDPLVAILYTQEGQK-RAFEVAGMLRREGIRTEINLLDRGVGAQMKHASRTAQ-----Y 368

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            V++G   V    V +K+  +G + +  L+++
Sbjct: 369 AVLIGKNEVESGTVTLKNLASGDQVECKLDDL 400


>gi|229591232|ref|YP_002873351.1| seryl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|259511678|sp|C3JY54|SYS_PSEFS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229363098|emb|CAY50099.1| serine tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 426

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 81/241 (33%), Gaps = 17/241 (7%)

Query: 17  DAEIASHKLM--LRTGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +  L  G+  + +    G    L  G   +    +   +        G  E
Sbjct: 133 DFEIKDHVALGELTGGLDFETAAKMSGARFALLRGPIARMHRALAQFMINLHTAEHGYEE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P L  A   + + +   + +++ +++   +  +   PT E  +T+I    I   + L
Sbjct: 193 AYTPYLVQAPALMGTSQLPKFEEDLFKISRDGEADLYLIPTAEVSLTNIVSGEILDAKQL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     R   G++R  +F   +     + P  S  +   +  +  R+
Sbjct: 253 PLKFVAHSPCFRSEAGASGRDTRGMIRQHQFDKVEMVQV-VEPSTSMEALEGLTANAERV 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              L L    +   +G +G         E  V +     ++    +  DF        F 
Sbjct: 312 LQLLELPYRVLALCTGDMGFSAVKTYDLEVWVPSQDKYREISSCSNCGDFQARRMQARFR 371

Query: 241 D 241
           +
Sbjct: 372 N 372


>gi|330807648|ref|YP_004352110.1| histidine--tRNA ligase,(histidyl-tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375756|gb|AEA67106.1| Histidine--tRNA ligase,(Histidyl-tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 429

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 138/436 (31%), Gaps = 48/436 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP            +    +  G  ++ +P ++  +L+  S G   D   K
Sbjct: 6   QAIRGMNDILPEQTPLWRYFEGTVARLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H  +        + +   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYVGPMFRHE-RPQKG--R 122

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
            R+F       F+L           M     R++  LGL+   ++ E   +G   S    
Sbjct: 123 YRQFHQIGLEVFNLEGPDIDAELIVM---TWRLWGELGLRD-AVKLELNSLGTSESRGRY 178

Query: 209 -----EF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                EF    L    E      K      + ++N +   ++     +  +    +    
Sbjct: 179 REALVEFLSAHLDKLDEDSQRRLKTNPLRVLDTKNAETQAVLVDAPKMADYLDDESRAHF 238

Query: 262 VHNEKLFDSLPEN---KRVSARGIEVG--HIF-----YFGTKYSLPMSATFKG--ADGKD 309
              +   D++           RG++     +F       G + ++     + G       
Sbjct: 239 EGLKARLDAVGIPYVINPKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGG 298

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQ-VCRDACEK 367
                  + +G  R+V  +            P+ +A    + L       +       E+
Sbjct: 299 KPTPGVGFAMGIERLVLML------EALDKVPEELARQVDVYLCAFGEAAELAALSLSER 352

Query: 368 IYARLSKVGCDVFWDDMGEQIG-SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
           I  +L  +   +         G  +  F  AD  G    +I+G   ++   V  K  R  
Sbjct: 353 IRDQLPNLRLQI-----NAGAGSFKSQFKKADKSGALYALILGDDELAQQVVGFKPLRGQ 407

Query: 424 GIREDMSLEEVINYAS 439
           G ++ ++ + +  + +
Sbjct: 408 GEQQSIAWDALAAHLA 423


>gi|119476376|ref|ZP_01616727.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119450240|gb|EAW31475.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 417

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 9/174 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP        + + +RE     G  E+  P ++  +L+  S G   D   KEM    DRN
Sbjct: 5   LPEESALWQYLESAVREVLAGYGYQEIRFPIVEQTELFKRSIGEVTDIVEKEMYTFNDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P            +           +     FR E RP+ G  R R+F     
Sbjct: 65  GESLTMRPEGTASCVRACLQNSLLDNQQIQRLWYHGPMFRYE-RPQKG--RLRQFHQIGV 121

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            SF +           M     R++ RLG+    +  E   IG   + E   +A
Sbjct: 122 ESFGVATPDVDAELILM---TARLWKRLGISEY-LTLELNSIGNLEARENYKVA 171


>gi|326802560|ref|YP_004320379.1| seryl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326553324|gb|ADZ81709.1| seryl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 423

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 97/317 (30%), Gaps = 68/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G K    +     ++    G  E+ VP L + D    +G+      +M  
Sbjct: 163 GAGFPVYKGKGAKLQRALINFFLDQAIENGYREVQVPILINGDSGFGTGQLPDKEGQMYY 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + D +   +   PT E  +T+++R  I    + P         FR E         G+ R
Sbjct: 223 VTDDD---LYLIPTAEVPVTNMYRGEILKEEDFPIKNTAYTPCFRREAGSYGAHVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +     + PE S     +M      +  +L L                   + 
Sbjct: 280 LHQFDKVELVQI-VHPEKSYDVLEEMSKYVQSLLQKLQLP------------------YR 320

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           VL   G    F S    D  +                                       
Sbjct: 321 VLRLCGGDMGFASAMTYDMEV--------------------------------------- 341

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                   R +EV  +  F T  S  + A FKG DGK H    +    +   R+VA ++E
Sbjct: 342 --WSGAQQRWLEVSSVSNFETFQSNRLKARFKGQDGKMHLAHTLNGSALALPRIVACILE 399

Query: 331 SSHDGKGIIWPDSVAPF 347
            +   +GI  P  + P+
Sbjct: 400 ENQTDQGIKVPSVLVPY 416


>gi|321441343|gb|ADW85086.1| glu- + pro-tRNA synthetase [Trogoptera salvita]
          Length = 134

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +   D ++  YV   S+GI   R +  ++    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFEVVYDDPDTQEKAYVYQNSWGIT-TRTIGVMVJVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P   A  +  ++             +   D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRXADIQAIVVPCGITASSTXDERKALVDSCKLLVNELESAGLRAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|171686512|ref|XP_001908197.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943217|emb|CAP68870.1| unnamed protein product [Podospora anserina S mat+]
          Length = 734

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 63/152 (41%), Gaps = 11/152 (7%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKG------IIWPDSVAPFKISLINI 354
            + +++   +     G  R++ +++E ++       G      + +P +VAP K+ ++ +
Sbjct: 561 ENVREYTPNVIEPSFGIGRILYSLMEHNYWTRASEGGDEARGVLSFPPAVAPTKVLIVPL 620

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            ++     +   K+  +L   G     DD    IG +++  D LG P  V V  + + D 
Sbjct: 621 SSNKDFTPEV-RKLSQKLRSAGVSSRIDDSSASIGKRYSRNDELGTPFGVTVDFQTLKDG 679

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V ++ R +  +     +++I          +
Sbjct: 680 TVTLRERDSTRQVRAEEDKIIAAIKALVEGTK 711



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-----HSYNKMF 178
           +   +PF    I   +R+E+ PR G++R REFLM +   F + PEG K     H    + 
Sbjct: 306 NTGQMPFASASIGKSYRNEISPRAGLLRVREFLMAEIEHF-VDPEGHKKHARFHEVADVE 364

Query: 179 VSYLR 183
           +++L 
Sbjct: 365 LAFLD 369



 Score = 43.4 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 10  ILQENPRDAEIASHKLMLRTGM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQN-R 63
            L+  P D       L  R        I+    G+Y + P G     NV  + R+     
Sbjct: 72  TLKGQPLDRAALDAMLRRRLFYTPSFEIYGGVSGLYDYGPPGCALQANVIDLWRKHFILE 131

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
              +E+    L   D+   SG  D +   M
Sbjct: 132 EDMLEVDCTVLTPHDVLKTSGHVDKFADWM 161


>gi|254172667|ref|ZP_04879342.1| glycyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033596|gb|EEB74423.1| glycyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 569

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R    ++E+S     D   +     +AP +++++ + A  +  +
Sbjct: 429 GEKIVPHVLEPSFGIDRPFYLLLENSLVIEEDRTYLKLKKDMAPIEVAVLPLVAK-EPLK 487

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                ++ +L K G  V +D+  + IG ++   D +G P  V + ++   D+ V I+ R 
Sbjct: 488 SIAYDVFRKLQKAGFIVVYDE-KDTIGKRYLRYDEIGTPYCVTIDNQTPEDNTVTIRDRD 546

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +  + +EE+ +      
Sbjct: 547 TREQVRVKIEELPSKLRELI 566



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 76/231 (32%), Gaps = 68/231 (29%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  S+G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 11  QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIEQKIREAFQREGFFELETPDITP 70

Query: 77  ADLWVESG-------------------RYDSYGKE------------------------- 92
             +++ SG                   R D   +E                         
Sbjct: 71  EKVFIASGHVEKFVDPLVECKKCGARFRADHLVEEALGMDVEGLSAEELTKLIREHDIRC 130

Query: 93  ---------------MLRLA--DRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQ 134
                          M         D+     P T + +  +  R +  +   LPF  +Q
Sbjct: 131 PECGGELSDVWYFNLMFETKIGPYGDQKGYLRPETAQGMFVNFKRLNAFARNKLPFGVFQ 190

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           I   +R+E+ PR G++R REF   +A  F    E     ++++    LR++
Sbjct: 191 IGKAYRNEISPRQGMLRLREFTQAEAEIFFNPKETEHPHFDEVKDEVLRLY 241


>gi|209520411|ref|ZP_03269173.1| seryl-tRNA synthetase [Burkholderia sp. H160]
 gi|209499148|gb|EDZ99241.1| seryl-tRNA synthetase [Burkholderia sp. H160]
          Length = 431

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 19/252 (7%)

Query: 17  DAEIASHKLMLR-TGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEM 69
           D E+  H  +    G+  +      G    +  GQ A     +   + +    + G  E+
Sbjct: 133 DFEVKDHVDVGTPLGLDFETGAKLSGARFTMLRGQIARLHRALAQFMIDTHTLQHGYTEI 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYR 126
             P + + D+   +G+   +  +M R+     +         T E  +T+  R  I    
Sbjct: 193 YTPYIVNPDILYGTGQLPKFADDMFRVEKGGGENTVTQYLISTSEISLTNTVRESIVEAD 252

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E     R   G++R  +F   +       P+ S  +  +M     
Sbjct: 253 ALPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVA-PDASYDALEQMVGHAE 311

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            I  +L L    +   +G +G   +     E  + A     ++    +   F        
Sbjct: 312 VILQKLELPYRVITLCTGDMGFSAAKTYDLEVWLPAQNTYREISSCSNTESFQARRMQAR 371

Query: 239 FDDIISLNSIVE 250
           F +      +V 
Sbjct: 372 FRNAQGKPELVH 383


>gi|163940978|ref|YP_001645862.1| histidyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163863175|gb|ABY44234.1| histidyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 431

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 139/448 (31%), Gaps = 79/448 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LKDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               +S  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLEVTIQYNNRKLLNGILQSINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D        +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLERGITVEMADTICNTVLSCLKLPIADFKDTFNNTL 238

Query: 267 LFDS----LPENKRVSARGIEVGHIF----------YFGTKYSLPMSATFKGA------- 305
           + D         + + A GI    IF          Y GT Y + +      +       
Sbjct: 239 VADGVEELQQLQQYLLALGINENTIFNPFLARGLTMYTGTVYEIFLKNGTITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+    +  A+ + +            +   + +I + 
Sbjct: 299 YDNIIGAFRGDNMNYPTVGISFGLDV--IYTALSQKTTTS---------STADLFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 348 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 396

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + +S   V +++   G    + L  + N
Sbjct: 397 EELSTETVVLRNMKEGTEVKIPLSSLEN 424


>gi|257463664|ref|ZP_05628055.1| seryl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317061213|ref|ZP_07925698.1| seryl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686889|gb|EFS23724.1| seryl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 424

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 73/226 (32%), Gaps = 15/226 (6%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     + + + +      G  E   P +  A++   +G+   + ++M
Sbjct: 158 SGSRFVLYRGAAARLERALISFMLDTHTTEHGYTEHLTPFMVKAEVCEGTGQLPKFEEDM 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  + N   M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 218 YKTTEDN---MYLISTSEISMTNIHRKEILEQAELPKYYTAYSPCFRREAGSYGKDVKGL 274

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        + S     KM  +   I  +L L    +   SG IG   +  
Sbjct: 275 IRVHQFNKVEMVKI-TDNKTSYEELEKMVNNAEAILQKLELPYRVIALCSGDIGFSAAKT 333

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              E  + +     ++    +  DF        +       S    
Sbjct: 334 YDLEVWLPSQNKYREISSCSNCEDFQARRMGLKYRPQGENKSEFCH 379


>gi|229168072|ref|ZP_04295800.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH621]
 gi|228615316|gb|EEK72413.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH621]
          Length = 431

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 140/448 (31%), Gaps = 79/448 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LKDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               +S  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLEVTIQYNNRKLLNGILQSINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D        +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLERGITVEMADTICNTVLSCLKLPIADFKDTFNNTL 238

Query: 267 LFDSLP----ENKRVSARGIEVGHIF----------YFGTKYSLPMSATFKGA------- 305
           + D +       + + A GI    IF          Y GT Y + +      +       
Sbjct: 239 VADGVKELQQLQQYLLALGINENTIFNPFLARGLTMYTGTVYEIFLKDGTITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 299 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADLFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 348 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 396

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           + +S   V +++   G    + L  + N
Sbjct: 397 EELSTETVVLRNMKEGTEVKIPLSSLEN 424


>gi|123239921|emb|CAM27479.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 163

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          L+    D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 69  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 128

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
             +I +E    G  ++++P+L  A+LW  + R+D
Sbjct: 129 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWD 162


>gi|33602151|ref|NP_889711.1| histidyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|39932137|sp|Q7WHN1|SYH_BORBR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397794|sp|Q7W6P7|SYH_BORPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33576589|emb|CAE33667.1| histidyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 428

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 137/435 (31%), Gaps = 51/435 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP      +    I+R      G   +  P L+   L+    G   D   KEM  
Sbjct: 13  GMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTDIVEKEMYT 72

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N  ++   P     +      H   Y + P   Y I   FR E RP+ G  R R+
Sbjct: 73  FTDALNGDSLTMRPEMTAGIVRASIEHNMLY-DRPHRVYAIGPVFRHE-RPQRG--RYRQ 128

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D  +              M V   R++  LGL+ + +   S              A
Sbjct: 129 FHQIDVEALGFAGPDVDAE---MIVMLARLWKLLGLQDVRLELNS----------LGQPA 175

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    +    +         +      + S    V     P          +LFD L E 
Sbjct: 176 ERAAHRAALIEHLERHQDILDEDGRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEE 235

Query: 275 KRVSARGI-----EVGHIFYFGTK-------YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            R    G+     + G  +    +       Y+L +        G    V  G    G +
Sbjct: 236 SRSHFDGLCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLV 295

Query: 323 RVVA-----AVIESSHDGKGI-IWPDSV---APFKISLINIKAHDQVCRDACEKIYARLS 373
            ++      AV  +    + + +W  SV    P +  +  +   ++  R    ++  +L 
Sbjct: 296 ELLGGKPAPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGEEGQR-LAARVGEQLR 354

Query: 374 KVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIR 426
             G DV         G +  F  AD  G  + VI+G   V+     IKH          +
Sbjct: 355 DAGLDVIVHAGA--AGFKAQFKRADASGARIAVILGGDEVASRTASIKHLRGPVGADAAQ 412

Query: 427 EDMSLEEVINYASHR 441
           + + L ++ +    +
Sbjct: 413 QQVPLAQLADVLKSK 427


>gi|320106187|ref|YP_004181777.1| seryl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319924708|gb|ADV81783.1| seryl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 440

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 18/211 (8%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN---- 100
           G +    +   + +      G  E+  P + ++     +G+   + +++    D+     
Sbjct: 171 GARLERALANFMLDLHTRLHGYTEVLPPFMVNSKSLYGTGQLPKFAEDLFHSDDKGSYVP 230

Query: 101 ----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRS 152
               D      PT E  +T++ R        LP ++      FR E     +   G++R 
Sbjct: 231 GELQDNDHWLIPTAEVPVTNLLRDETIDEVKLPISYCAWTPCFRSEAGSYGKDVRGMIRQ 290

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---- 208
            +F   +   F  TP  S+  + K+      +   L L    M   +G +G   +     
Sbjct: 291 HQFQKVELVKF-ATPADSEFEHEKLTRHAETVLELLKLPYRRMLLCTGDMGFSSAKTYDL 349

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           E  +       ++    +F+DF     N  F
Sbjct: 350 EVWLPGQNLYREISSCSNFLDFQARRANIRF 380


>gi|302388768|ref|YP_003824589.1| seryl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302199396|gb|ADL06966.1| seryl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 426

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 78/231 (33%), Gaps = 16/231 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    +   + +    + G  E+  P + +      +G+   + +E  +L 
Sbjct: 162 FVVYKGAGARLERALINFMLDLHIEKHGYKEIFPPFIVNRASMTGTGQLPKFEEEAFKLF 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             N+      PT E  +T++  + I    +LP  +      FR E     R   G++R  
Sbjct: 222 --NNTDYFLIPTAEVPVTNLHANEILEKEDLPIYYVAYSGCFRAEAGSAGRDTRGIIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F   +   F   PE S     K+      +   LGL    +   +G +G   S  + + 
Sbjct: 280 QFNKVELVKF-TEPEKSMEELEKLTADAEEVLQLLGLPYRVVALCTGDLGFASSKTYDIE 338

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                        +  +   S  ++F D  +  + +       A    VH 
Sbjct: 339 --------VWMPSYNRYVEISSCSNFKDYQARRANIRYRPEKGAKPQYVHT 381


>gi|260583855|ref|ZP_05851603.1| histidine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158481|gb|EEW93549.1| histidine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 438

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 134/445 (30%), Gaps = 52/445 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI +  KG    LP   K    +    R         EM  P  +S +L+        D 
Sbjct: 1   MIQK-PKGTADLLPEEIKIWHYIEETARIILGDYQFEEMRTPMFESYELFSRGVGDTSDI 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF---RSHIKSYRNLPFTFYQIQLKFRDELRP 145
             KEM    D+ D+ +   P     +   +   +     ++  P+  Y +   FR E RP
Sbjct: 60  VSKEMYDFYDKGDRHITLRPEGTAAIVRAYVENKLFGPEHKK-PYKVYYMAPMFRYE-RP 117

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           + G  R R+F       F  T   +      M      +   LGL ++ +   S     D
Sbjct: 118 QSG--RLRQFHQLGVEVFGSTNPATDVETIAM---AWDLLKELGLSNMRLVINSLGKTAD 172

Query: 206 LSHEFIVLADTGE---TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                  L D  E    ++           P    D  D   +  +          + + 
Sbjct: 173 RIAYRQALIDYLEPFTEELSEDSKNRLHKNPLRVLDSKDKRDIEIVKNAPRILEFLSDEA 232

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPMSAT---------- 301
                F+ + +         E+      G  Y           S    A           
Sbjct: 233 RT--HFEKVQQYLTALEIPFEIDETMVRGLDYYQDTIFEIMTDSKSFGAKTTICGGGRYD 290

Query: 302 --FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              +  DG +       +G+G  R+V  + +   +         +      ++ +    +
Sbjct: 291 GLVQELDGPETPGF--GFGLGMERLVLLMKDEQVEI------PDLQELDAYIVGLG---E 339

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+   L + G  V  D  G +   QF  A   G  + + +G + ++  +V +K
Sbjct: 340 ETEEEVLKLSISLRQQGYSVDRDFFGRKAKPQFKNAQKYGAKVVITLGEEELASRQVPLK 399

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
              TG    + L +V       F  
Sbjct: 400 VMNTGKEVKVDLADVYEDFDSLFRQ 424


>gi|219126433|ref|XP_002183462.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405218|gb|EEC45162.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 442

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 9/154 (5%)

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR----NDKAMIYGPTHEEVMTDIF 118
           + G  E+SVP +        + +   + +++  +       N +     PT E  +T++ 
Sbjct: 189 QHGYTEVSVPFVVGRSALEGTSQLPKFQEDLFAITPESHTCNGEDAFLIPTAEVPVTNMH 248

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R  +    +LP ++      FR E     R   G++R+ +F   +      T + S   +
Sbjct: 249 RGQVLEESDLPLSYVAWTPCFRAEAGSYGRDTKGLIRTHQFQKVELVKI-TTADTSDAEH 307

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             +      +   L L    +R  SG IG    H
Sbjct: 308 ETLTAHAEAVLRSLELPYRKVRLCSGDIGFSARH 341


>gi|78777864|ref|YP_394179.1| seryl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|123754693|sp|Q30PY7|SYS_SULDN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78498404|gb|ABB44944.1| seryl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 415

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 78/213 (36%), Gaps = 12/213 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G K    +   +    ++ G  E+SVP+L +      +G+   +  ++ ++     + +
Sbjct: 169 MGAKLERALINFMLNFNSKRGFEEVSVPSLVNRAALEGTGQLPKFEDDLYKIQ---GQEL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++++  I     LP         FR E     R   G++R  +F   + 
Sbjct: 226 FLIPTAEVPVTNLYQDEILHVERLPIKMTAYTSCFRKEAGAAGRDTRGMIRQHQFHKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            S    P+ S   +++M  +   +   L L    +R   G +G   +     E  +    
Sbjct: 286 VSI-TKPQQSDEIFDEMVQTASDLLSALELPHRLVRLCGGDLGFGAAKTVDLEVWLPGQN 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              ++    +  +F        F D    + + 
Sbjct: 345 AYREISSVSNTREFQARRAKIRFKDGDKNSFVH 377


>gi|289642681|ref|ZP_06474821.1| glycyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289507511|gb|EFD28470.1| glycyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 461

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 155/469 (33%), Gaps = 75/469 (15%)

Query: 25  LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G++   S      +  + + PLG +  +NV     +   +     + +    + +
Sbjct: 14  LCKRRGLVFPSSEIYGGLRASWDYGPLGVELKNNVKRAWWKAMVQGREDVVGLDSCVILA 73

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ++W  SG    +      L +       +   H E   +  R         P    ++ 
Sbjct: 74  REVWETSGHVQVFVD---PLTECLSCHKRFRADHLEEAFEARRGRP------PTALTEVA 124

Query: 137 LKFRD------ELRPRFGVMRSREFLMKDA-YSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                      E R   G++++    ++DA     L PE ++     +F++Y  +     
Sbjct: 125 CPNCGSRGTFTEPRMFNGLLKTYLGPVEDASGLAYLRPETAQ----GIFINYANVQAT-- 178

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                     G IG    +E         T+ F   +   F  P E+  +          
Sbjct: 179 -ARRKPPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVPPGEDETWHQYWIDERTK 237

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-------------GTKYSL 296
                     +  H E   +   +    S R +++ + F F              T Y L
Sbjct: 238 WYHDLGVRPENLRHFEHPKE---KLSHYSKRTVDIEYRFDFVGLEWGELEGIANRTDYDL 294

Query: 297 PMSATFKGAD--------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS----- 343
            + A   GAD        G  +   +     G  R     +  ++       P++     
Sbjct: 295 SVHAKASGADLTYFEQATGTRYTPYVIEPAAGVDRATLVFLLDAYAED--TAPNTKGGVD 352

Query: 344 ----------VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     +AP K +++ + + +         + A L +   +V +DD G  IG ++ 
Sbjct: 353 RRVVLRLDRRLAPVKAAVLPL-SRNADLSPVARDLAAALRRHW-NVDFDDAGA-IGRRYR 409

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             D +G P  + V    + D  V I+ R T  +E +++++ ++Y + + 
Sbjct: 410 RQDEIGTPFCLTVDFDSLQDQAVTIRERDTMAQERVAMDQAVSYLNAKL 458


>gi|189218097|ref|YP_001938739.1| Histidyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189184955|gb|ACD82140.1| Histidyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 405

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 132/422 (31%), Gaps = 39/422 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
            G   + P      + + +  RE   R   +E   P L++ +L+  +SG  D    ++  
Sbjct: 5   PGFRDFYPSDCAFRNFIFSRWRESCRRFNFVEYDGPLLETIELYQKKSG--DEILSQIYH 62

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  +  +H K Y+  P  ++ I   FR E R + G  R RE 
Sbjct: 63  FIDKGSRHVALRPEMTPTLARMIEAHFKEYKK-PIKWFSIPQLFRYE-RAQKG--RLREH 118

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +          +      + +  L  F  LG     +R        +   +  +  D
Sbjct: 119 YQLNCDIVGEADLEADIELINLAIDILLSF-DLGKDDFVVRVSDRLFWTEFLKKKAIPRD 177

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                   +       I  E  +  +    +   E +    +       E L + L    
Sbjct: 178 DW-----YAFFQAIDKIEREPREEIERRLGDLAKEVFAILESPPCWERFEILLEGLRHRG 232

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV----------------QMGSYGI 319
                 I++G +   G  Y   +        G+   +                 + + G 
Sbjct: 233 LAEYVCIDLGIVR--GLAYYTGIVYEIFDRAGEFRAIAGGGRYDDLLKQIGGEDIPAAGF 290

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G   VV   I          +P       + ++  +            +  +L + G  V
Sbjct: 291 GMGDVVLGEIIRKKKVIEPSFPR----LDVYVVFPEGKKNPQGLF---LIEQLRRQGFSV 343

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +     ++  Q A A  L     +IV  K + +  VEIK+     +  + +E++  +  
Sbjct: 344 DFSFCPSKLKKQLATAQSLNARFALIVSDK-IEEGVVEIKNMDERTQLTLPVEQLAGWLK 402

Query: 440 HR 441
            R
Sbjct: 403 ER 404


>gi|262340835|ref|YP_003283690.1| glycine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272172|gb|ACY40080.1| glycine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 478

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 114/359 (31%), Gaps = 70/359 (19%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMR 151
           M ++ + N K +   P   + +   F + IKS R  +PF   QI   FR+E+  R  + R
Sbjct: 169 MFQIKNENKKDLYLRPETAQGIFCNFNNVIKSNRMKIPFGIAQIGKSFRNEIFARKFIFR 228

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   +   F    E  K                                      + 
Sbjct: 229 MREFEQMEMQFFIFPEEEKK-------------------------------------WYE 251

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D          D  ++ +   +       + + I   +   +     +H+ + FD  
Sbjct: 252 YWKDIRFKWHLFLGDQKNYKLRDHDHLAHYASAGSDIEYNFPFGFQEVEGIHSRRDFDLK 311

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV--- 328
                                 +S      F+       YV   S G+   R+  A+   
Sbjct: 312 KHEY------------------FSKKKLRVFESRKNYIPYVIETSLGLD--RLFLAIFTS 351

Query: 329 ------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                 +E+ +    +  P  ++P K ++  +   D    +  +KI+             
Sbjct: 352 SLKEEKLENGNTRIVLKLPPYLSPIKGAIFPLVKKD-GLPETAKKIFNDFKIHHK--LIY 408

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  E IG  +   D +G PL   V  + +  + V +++R +  ++ + ++++     + 
Sbjct: 409 DEKESIGKLYRRQDAIGTPLCFTVDYETIETNTVTMRYRDSMQQKRVHIKDICRIIKYE 467


>gi|254385101|ref|ZP_05000434.1| seryl-tRNA synthetase 2 synthetase 2 [Streptomyces sp. Mg1]
 gi|194343979|gb|EDX24945.1| seryl-tRNA synthetase 2 synthetase 2 [Streptomyces sp. Mg1]
          Length = 430

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 6/155 (3%)

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
            +     R G +E +VP L S      +G+   + +++ +     D+ +   PT E  +T
Sbjct: 180 FLDIHTRRHGYVEHAVPYLVSRKTMTGTGQLPKFEEDLFK-TGVADRELFLIPTAEVPLT 238

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           +++   I    +LP +       FR E     R   G++R  +F   +     + P  + 
Sbjct: 239 NLYADEIIPPTDLPLSLTAHTPCFRSEAGSYGRDTRGLIRQHQFAKVEIVQM-VDPADAD 297

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            +   M          LGL    ++  +G  G   
Sbjct: 298 ATLETMVGHAEACLKELGLAYRVVKLAAGDTGFSA 332


>gi|221065437|ref|ZP_03541542.1| seryl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220710460|gb|EED65828.1| seryl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 438

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 24/257 (9%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D EI  H  L    G+  +      G    +  GQ A     +   + + Q  + G  E 
Sbjct: 138 DFEIKDHVDLGAPIGLDFEAGVKLSGARFTVMQGQIARLHRALAQFMLDLQTEQHGYTEC 197

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM--------IYGPTHEEVMTDIFRSH 121
            VP + ++D    +G+   +  ++         A            PT E  +T++ R  
Sbjct: 198 YVPYIVNSDSLKGTGQLPKFEGDLFAAQKGGQDAEPLPDTAALYLIPTAEVPLTNLVRDE 257

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + +   LP         FR E     R   G++R  +F   +     + PE S  +  +M
Sbjct: 258 VLAEDRLPIKLTAHSPCFRSEAGSGGRDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEM 316

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                 +  +LGL    M   +G +G   +     E  V A     ++    +   F   
Sbjct: 317 TGHAEAVLQKLGLPYRVMSLCTGDMGFGAAKTYDLEVWVPAQGTYREISSVSNCEAFQAR 376

Query: 234 SENTDFDDIISLNSIVE 250
                F +    N +V 
Sbjct: 377 RMQARFKNAQGRNELVH 393


>gi|332665395|ref|YP_004448183.1| glycyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334209|gb|AEE51310.1| glycyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 516

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 155/510 (30%), Gaps = 102/510 (20%)

Query: 30  GMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           G I Q S        +Y + P G +  +N+         +     + +          W 
Sbjct: 19  GFIFQSSEIYDGLAAVYDYGPYGVELKNNIKDYWWAAMVQMHDNIVGLDAAIFMHPKTWK 78

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  D++   ++   D   +        EE+     +   K+ + +     +    F D
Sbjct: 79  ASGHVDAFNDPLVDNKDSKRRFRADQLIEEEID----KIQGKADKEVEKAKKKFGDSF-D 133

Query: 142 ELRPRFGVMRSREFLMK---------------DAYSFDLTPEGSKHS------------- 173
           E   R    R  E+  K               D        E    +             
Sbjct: 134 EALYRTTNPRVLEYTQKAQAINDRLTEAMSKGDMAEMKTIIEDLDITDPDTGSRNWTEVR 193

Query: 174 -YNKMF------------VSYLRIFHRLGL--KSIPMRAESGP--------IGGDLSHEF 210
            +N MF              YLR     G+    + ++  +          IG    +E 
Sbjct: 194 QFNLMFNTQLGNIAGEEGKLYLRPETAQGIFVNFLNVQKSTRQKIPFGIAQIGKAFRNEI 253

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +        + F   +   F  P E   + D      +         A      +  F  
Sbjct: 254 VARQFIFRMREFEQMEMQFFIRPGEEMKWYDYWKQTRMNWHLKIGTPA-----EKLRFKD 308

Query: 271 LPENKRVSARGIEVGHIFYFG----------TKYSLPMS-------ATFKGAD-GKDHYV 312
                  +   +++ + F FG          T + L            +   +  +++  
Sbjct: 309 HDNLAHYANAAVDIQYEFPFGFKELEGIHSRTNFDLSSHQELSGKKLQYFDPELNENYVP 368

Query: 313 QMGSYGIGAMRVVAAVIESS------HDGKG-------IIWPDSVAPFKISLINIKAHDQ 359
            +    +GA R+  A++  S       D KG       +    ++AP K++++ +  + +
Sbjct: 369 YVVETSVGADRMFLAMMSESLKEESVPDAKGEDSTRVVMKLHPALAPVKVAVLPLLKNRE 428

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               A   ++ +L K      +D+    IG ++   D +G P  V +  + + ++ V I+
Sbjct: 429 ELVKASTDVFNKL-KFSFQCQYDEKDA-IGRRYRRQDAIGTPYCVTIDFETLENNTVTIR 486

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            R +  +E + ++ +      R      +L
Sbjct: 487 ERDSLKQERVHIDRIEEIVRQRVDMKTLLL 516


>gi|321441295|gb|ADW85062.1| glu- + pro-tRNA synthetase [Caloptilia bimaculatella]
          Length = 134

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S RGI+     + G  +S      +   +  +  YV   S+GI   R +  ++    D +
Sbjct: 15  SGRGIQGATSHHLGQNFSKMFEIIYDDPETQEKKYVFQNSWGIT-TRTIGVMVLVHGDDR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQI 388
           G++ P  VA  ++ ++         +   +   D+C+ +   L   G     D       
Sbjct: 74  GLVLPPRVAAIQVIIVPCGITASSTQEERKSLIDSCKDLEQVLIAGGIRAEGDYKDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|114320408|ref|YP_742091.1| histidyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311859|sp|Q0A986|SYH_ALHEH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|114226802|gb|ABI56601.1| histidyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 429

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 142/434 (32%), Gaps = 55/434 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G    LP        V + I+      G  E+ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GFSDILPEQTPLWQFVESNIQATLEAYGYREIRLPIVEKTELFSRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            +   +   P  +Y     FR E RP+ G  R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRCGIQNGLFHGGQPRVWYA-GPMFRHE-RPQKG--RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHE 209
               A  +  +  G       M +   R+   LGL+ + +   +               E
Sbjct: 126 HQIGAEVYGESGPGVDAE---MILMTARLLRCLGLEDVRLELNTLGTGEARAAHRAALVE 182

Query: 210 FIVLAD------------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-- 255
           ++   +            +   ++  +K+     +  +     D +  +S          
Sbjct: 183 YLQAHEDRLDDDARRRLHSNPLRILDTKNPDMQALVEQAPRLMDYLDEDSRSHFQAVCRV 242

Query: 256 -------YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                  Y     +     + S    + ++ R    G +   G +Y        +   GK
Sbjct: 243 LDQAGVAYRVNPRLVRGLDYYSRTVFEWITDRLGAQGTV-LAGGRY----DTLVEQIGGK 297

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                  + G+     + +++E S    GI  P S          + A         E +
Sbjct: 298 PTPAIGFALGL---ERLVSLLEES----GISGPQS----GPHAFVVSADSLRALPLVEGL 346

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIRE 427
             RL   G  +     G    SQF  AD  G  L +++G + +++ +  +K  R    ++
Sbjct: 347 RDRLP--GLRLQMQTEGGSFRSQFKRADRSGAALALVLGEEELAEGRFGVKDLRGDAEQQ 404

Query: 428 DMSLEEVINYASHR 441
            +  E + +Y + R
Sbjct: 405 RLDPEALSDYLARR 418


>gi|225181881|ref|ZP_03735316.1| seryl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167395|gb|EEG76211.1| seryl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 426

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 9/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +   G +    +   + +      G  E+  P +   +  V +G+   + ++  R+AD 
Sbjct: 164 FYKGQGAQLERALINFMLDLHITEHGYTEIFPPFMVHRESMVGTGQLPKFEEDAFRVADT 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E  +T++ R  I +  +LP  +      FR E     R   G++R  +F
Sbjct: 224 D---YFLIPTAEVPVTNLHREEIFTEEDLPKHYVAYSACFRAEAGAHGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +   F   P+ S      +  +   I  RLGL    M   +  +G   + ++
Sbjct: 281 NKVELVKF-ARPQDSMQELETLTANAEEILKRLGLPYQTMLMCTADLGFAAAKKY 334


>gi|294101987|ref|YP_003553845.1| seryl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616967|gb|ADE57121.1| seryl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 423

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 13/208 (6%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +      G  E+  P + S+     +G+   + +++ +      + +
Sbjct: 169 GARLERALINFMLDLHTEHHGYKEIQPPFMVSSQTMQGTGQLPKFAEDLYKC---EGEDL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++    I     LP  +      FR E     R   G+MR  +F   + 
Sbjct: 226 WLIPTAEVPLTNLHSGEILPEEVLPLYYTAYTPCFRKEAGSYGRDVRGMMRQHQFDKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                 PE S     K+  +   +  +LGL    +   +G +G   S     E  +    
Sbjct: 286 VKIS-KPENSYDELEKLTANAEEVLQKLGLPYRVITLCTGDMGFGASKTYDLEVWLPFQD 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS 244
              ++    +  DF      T +     
Sbjct: 345 KYREISSCSNCEDFQARRMGTRYKPADG 372


>gi|294660421|ref|NP_853173.2| glycyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|298286863|sp|Q7NB88|SYG_MYCGA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|284812080|gb|AAP56741.2| glycyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930655|gb|ADC30594.1| glycyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 463

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 111/354 (31%), Gaps = 70/354 (19%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
              P   + +   F++ +++ R  LPF   QI   FR+E+ P   + R+REF   +   F
Sbjct: 166 YLRPETAQGIFINFKNIVRTQRMKLPFGVAQIGKAFRNEITPGNFIFRTREFEQFEIEYF 225

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                       + F  Y+       +                             ++  
Sbjct: 226 LEP-----ELVKEKFDWYINQIEDFLIN----------------------------KLLI 252

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +K  +     +++               +   ++    + +   FD    +   S + ++
Sbjct: 253 NKQLIKRHEIAKDELAHYSSRTIDFQFNFPHGWSELWGLAHRGNFDLT-AHSNESGKTLD 311

Query: 284 VGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSH--------- 333
                             +    +       +    +G  R++ A+  + +         
Sbjct: 312 ------------------YHNEIEKTKIIPDVIEPSLGIERILYAIFCAHYHVEQLADND 353

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK---VGCDVFWDDMGEQIGS 390
             + +  P S++P++++++ +       +D   ++Y  L K         +D  G  IG 
Sbjct: 354 SREVLRLPVSLSPYQLAILPLVNK---LKDQAYQLYLDLLKISDANLRFDFDSAG-SIGK 409

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++   D +G    +      +    V I+ R +  +  + + E+  +  +    
Sbjct: 410 RYRRYDAIGAKYCLTYDFDSLEKGIVTIRERDSMEQIKIPISELRQWIRNNLHE 463


>gi|254786615|ref|YP_003074044.1| histidine--tRNA ligase [Teredinibacter turnerae T7901]
 gi|237683869|gb|ACR11133.1| histidine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 423

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 20/168 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  KG+   LP        + A I +     G  E+  P L++ +L+  S G   D   K
Sbjct: 5   QAVKGMNDLLPADSPYWQYLEATITDVVQGYGFQEIRFPILEATELFKRSIGEVTDIVEK 64

Query: 92  EMLRLADRNDKAMIYGPT-------HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           EM    DRND+++   P          E    ++     + +      + +   FR E +
Sbjct: 65  EMYTFLDRNDESVTLRPEGTASCVRACEQHQLLYNRGTIAQK-----LWYMGPMFRYE-K 118

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           P+ G  R R+F      ++ +    +      M     R++  LG+  
Sbjct: 119 PQKG--RLRQFHQIGVEAYGIASADADAELLIM---TARLWKTLGIDD 161


>gi|229080541|ref|ZP_04213062.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock4-2]
 gi|228702843|gb|EEL55308.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock4-2]
          Length = 436

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 151/461 (32%), Gaps = 80/461 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACGDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRDIALRYDLTIPFAKVVAMNQNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLEISIQYNNRKLLNGILQAINIPTEL 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +++ I+  D  E ++       D      + +  D I    +              +N+ 
Sbjct: 179 TNDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIVDFKEAFNNQL 237

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 238 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTIYEIFLKDGSITSSIGSGGR 297

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 298 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADLFIIPLG 346

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 347 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 395

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVI-NYASHRFSNNRPV 448
           + +S + V +++   G    + L  +  N  +  F+   P+
Sbjct: 396 EELSTNTVVLRNMKEGSEMKVPLSSLKNNTLNKYFTTPTPL 436


>gi|237654046|ref|YP_002890360.1| histidyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|237625293|gb|ACR01983.1| histidyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 431

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 129/446 (28%), Gaps = 78/446 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP   +  +    I+R+     G   + +P ++   L+  + G   D   K
Sbjct: 6   QAVRGMNDILPADAETWEYFEDIVRDWLQSYGYRPIRMPLVEPTPLFKRAIGEVTDIVEK 65

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D  N + +   P            H       P   Y     FR E RP+ G  
Sbjct: 66  EMYSFEDALNGEHLTLRPEGTASCVRAAIQHNLIPAGGPQRLYYYGPMFRHE-RPQKG-- 122

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI----------------- 193
           R R+F      +       +      M     R++  LGL+ +                 
Sbjct: 123 RYRQFHQIGVEALGFAGADTDAELILMCA---RLWEDLGLEDVALEINSLGSPEERAQHR 179

Query: 194 ------------------PMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                               R  + P  I    + E   + +          D       
Sbjct: 180 AALIAHLEQHQDKLDEDGKRRLYTNPLRILDTKNPELQAIVEAAPRLADYLGDESKAHFE 239

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +      D      I  +        +    E +   L     + A G   G     G  
Sbjct: 240 AVQVFLKDAGIPYRINHRLVRGLDYYNRTVFEWVTTRLGAQGTICAGGRYDGLFEQLG-- 297

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS--VAPFKISL 351
                        GK        + IG  R++            ++W      A   +  
Sbjct: 298 -------------GKPQPA--AGFAIGIERLL------------LLWQACGGEAERPVPD 330

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + + +  +  +    +    L + G  V     G    SQ   AD    P+ +++G    
Sbjct: 331 VYVVSVGEAAQRLGFRAAETLREHGFAVLMHCGGGSFKSQMKKADASEAPVAIVIGEDEA 390

Query: 412 SDSKVEIK-HRLTGIREDMSLEEVIN 436
           +  +V +K  R+ G ++ +++++++ 
Sbjct: 391 AAGEVGLKPLRVAGAQQRVAIDDLVE 416


>gi|229005605|ref|ZP_04163310.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides Rock1-4]
 gi|228755637|gb|EEM04977.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides Rock1-4]
          Length = 441

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 139/451 (30%), Gaps = 70/451 (15%)

Query: 31  MIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY 86
           MI    ++ KG   +LP  Q   + +     E   R G   +  PTL   +L   + G  
Sbjct: 1   MIQMDVRNVKGTKDYLPAEQLLRNKIKRACEETFERYGCKPLETPTLNMYELMAYKYGGG 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
               KEM  L D+ ++ +            +   +      LPF  Y+I   FRD     
Sbjct: 61  AEILKEMYTLRDQGNREIALRYDLTIPFAKVVAMNPDIR--LPFKRYEIGKVFRD---GP 115

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------A 197
               R REF+  D     +  E        M +++  +F  L L                
Sbjct: 116 IKQGRFREFIQCDVDIVGV--ESVIAEAELMAMAF-DLFKTLNLDVTIQYNNRKLLTGIL 172

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ----WT 253
           +S  I  + +++ I+  D  E ++       D        D  +++              
Sbjct: 173 KSVEIQDEQTNDVILSLDKLE-KIGIDGVRKDLQSRGIVNDTIEVVCHTVESCMTLELNE 231

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF----------YFGTKYSLPM----- 298
                ++ +  E + +     + + A GI+   +F          Y GT Y + +     
Sbjct: 232 FKQIFSNSLVTEGINELQQLQQYLLALGIQDNTVFNPFLARGLTMYTGTVYEIFLTDGSI 291

Query: 299 ------SATFKG------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                    +         D   +     S+G+     +   +                 
Sbjct: 292 TSSIGSGGRYDNIIGAFRNDNTSYPTIGISFGLDV---IYTALTQKETESTCA------- 341

Query: 347 FKISLINIKAHDQVCRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
             I +I I    +     C +I   L  K    V  +  G ++      A+    P  +I
Sbjct: 342 -DIFIIPINTEVE-----CLRITQLLRSKSTFKVELELAGRKLKRSLNYANKENIPYVLI 395

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G   +S   + +++   G    + L  + +
Sbjct: 396 IGDTEISTETIVLRNMKEGTEMKLPLSCIED 426


>gi|255527097|ref|ZP_05393985.1| seryl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296187885|ref|ZP_06856278.1| seryl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255509199|gb|EET85551.1| seryl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296047506|gb|EFG86947.1| seryl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 426

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V     +    + G  E+  P + ++   V +G+   + ++  R++  
Sbjct: 167 FYRGLGARLERAVITYFLDVHTEKHGYEELFPPYMVNSSSMVGTGQLPKFEEDTFRIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE----LRPRFGVMRSREF 155
            +  +   PT E  +T+ +R  +    +LP         FR E     R   G++R R+F
Sbjct: 225 -NSDLFLIPTAEVPVTNFYRDEVLKGEDLPIKHVAYSACFRSESSSAGRDTRGLVRQRQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              +   F   PE S     K+      I   L L    ++   G +G
Sbjct: 284 NKVELVKF-TKPEQSYDELEKLTNDAEEILQGLCLPYRVVKICKGDLG 330


>gi|145356603|ref|XP_001422517.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582760|gb|ABP00834.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 405

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 133/422 (31%), Gaps = 64/422 (15%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
           +    RE     G  E   P L+S +L+  ++G  +    ++   +D+ D+ +   P   
Sbjct: 7   LFGHFRECAKVFGFDEFDAPVLESEELFTRKAG--EEITTQLYNFSDKGDRRVALRPELT 64

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
                +     KS   LP  ++ I   +R E R   G  R RE    +     ++   ++
Sbjct: 65  PSFARLILQQGKS-LALPAKWFAIGQCWRYE-RMTRG--RRREHYQWNMDIVGVSGVEAE 120

Query: 172 HSYNKMFVSYLRIFHRLGLK--SIPMRAESGP----------IGGDLSHEFIVLADTGET 219
                +  +    F R+G+    + ++  S            I  +      V+ D  E 
Sbjct: 121 AE---LLAAITTFFKRVGVTSADVGIKVSSRKLLQEVLTRFGIDSESFAPVCVVVDKIEK 177

Query: 220 -------QVFCSKDFMDFPIPSE-----------NTDFDDIISLNSIVEQWTAPYAATSD 261
                  +        D  +                      +      +    YA    
Sbjct: 178 LPREKIEEELRELGVSDEAVEGILAATSMRTVEELEALIGPDAEAVKDLKKLFEYADAYG 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--------KYSLPMSATFKGADGKDHYVQ 313
             +  +FD+          GI        G         +Y + + A      G++  + 
Sbjct: 238 YRDWLVFDACVVRGLAYYTGIVFEGFDRAGELRAICGGGRYDMLLGAL----GGENQPMV 293

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQVCRDACEKIYARL 372
              +G        AVI      KG++ PD      +  +  +    +  R A  ++ A+L
Sbjct: 294 GFGFG-------DAVIVELLKDKGLM-PDFSKGDVQDLVFPLG---ESLRPAAMRVAAQL 342

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V      ++    F  A+ +G    +++G K      V +K   +    D+ LE
Sbjct: 343 RDAGRTVDLILEDKKAKWAFKQAERVGAQRVILLGEKEWEAGNVRVKDLASREEVDVKLE 402

Query: 433 EV 434
           ++
Sbjct: 403 DL 404


>gi|56961795|ref|YP_173517.1| seryl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|67461675|sp|Q5WM19|SYS_BACSK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56908029|dbj|BAD62556.1| seryl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 424

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 13/216 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +         E+  P + +    + +G+   + +++ +++   ++ 
Sbjct: 169 LGARLERALINFMMDMHATEHDYTEVLPPYIVNRASMIGTGQLPKFEEDVFKIS---EED 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  +     LP  +      FR E     R   G++R  +F   +
Sbjct: 226 YFLIPTAEVPVTNLHRGEVLQGEQLPIAYNAYSTNFRSEAGSAGRDTRGLIRQHQFNKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F L PE S +    M      +  RLGL    +   +G +    +     E  + + 
Sbjct: 286 LVRFSL-PEDSNNQLEIMTTHAENVLKRLGLPYRVVTLCTGDLTFASTKTYDLEVWMPSA 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               ++    +  DF     N  F            
Sbjct: 345 NTYREISSCSNIGDFQARRANIKFRRDPKSKPEYVH 380


>gi|159467701|ref|XP_001692030.1| seryl-trna synthetase [Chlamydomonas reinhardtii]
 gi|158278757|gb|EDP04520.1| seryl-trna synthetase [Chlamydomonas reinhardtii]
          Length = 472

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 13/205 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            +G Y     G      +     +   + G   +  P     ++  E  +   +  E+ +
Sbjct: 170 GRGYYLTH-EGVLLNQALINAALQMAYKRGYAPVHTPFFMRQEIMAECAQLSQFDDELYK 228

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +    D       T E+ +  + R       +LP  +      FR E+    R   G+ R
Sbjct: 229 VTGEGD-DKYLIATSEQTLCAMHRKGWFEKADLPTKYVGYSTCFRKEVGSHGRDTLGIFR 287

Query: 152 SREFLMKDAYSFDLTPEG--SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
             +F   +      +PEG  S  +  +M  +    +  LGL    +   SG +    S  
Sbjct: 288 IHQFEKVE-QFVIASPEGNASWEAMEEMLANAEDFYQSLGLPYRVVNIVSGELNNAASKK 346

Query: 209 ---EFIVLADTGETQVFCSKDFMDF 230
              E    A     ++    + +D+
Sbjct: 347 YDLEAWFPASATFRELVSCSNCLDY 371


>gi|115524706|ref|YP_781617.1| seryl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|122296078|sp|Q07N47|SYS_RHOP5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|115518653|gb|ABJ06637.1| seryl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
          Length = 476

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 81/249 (32%), Gaps = 63/249 (25%)

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I   + LP     +   FR E     R   G++R  +F   + 
Sbjct: 275 WLIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVEL 334

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
            S   TPE SK  + +M      +  RLGL    M   +G +G      + +        
Sbjct: 335 VSI-TTPEQSKDEHERMLACAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIE------- 386

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                  +  P   E   + +I S +                                  
Sbjct: 387 -------VWMPGQGEGGAYREISSCSV--------------------------------- 406

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKG-I 338
                     G   +  M A  +G DGK  +V  +   G    R + AVIE+     G I
Sbjct: 407 ---------CGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRALIAVIENYQQEDGSI 457

Query: 339 IWPDSVAPF 347
             PD++ P+
Sbjct: 458 AVPDALLPY 466


>gi|161511228|ref|NP_840246.2| histidyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718]
 gi|46397795|sp|Q82XU9|SYH_NITEU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 420

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 124/431 (28%), Gaps = 45/431 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           +  +G+   LP            IR      G   +  P ++  DL+V S G   D   K
Sbjct: 6   RAVRGMNDILPDESGLWAFFEDTIRTWLAAYGYRNLRTPIVEQTDLFVRSIGEVTDIVEK 65

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D  N + +   P            H   Y   P   Y     FR E RP+ G  
Sbjct: 66  EMYTFVDHLNGENLTLRPEGTASCVRAVIEHNLLYA-GPQRLYYSGPMFRHE-RPQKG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R+F      +              M     R++  LG+  + +   +  +G   S   
Sbjct: 122 RYRQFHQVGVEALGFAGPDIDAELIVMCA---RLWRLLGISDVRLEIST--LGSTESRSV 176

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK---L 267
                    + FC     D     +      + S N  + +  A      D  +E     
Sbjct: 177 YRARLISYLEKFCDDLDEDARRRLKTNPLRILDSKNPAMREILAGAPRLFDDLDEDSLAH 236

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTK-YSLPMSATFKGADGKD----------------- 309
           F++L    R      E+ +    G   Y+  +        G                   
Sbjct: 237 FEALQRILRNQDISFEINNRLVRGLDYYNRTVFEWVTDKLGAQGTICAGGRYDGLIAQIG 296

Query: 310 -HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                   + +G  R++ A++  +          +V    I  I +    +   +   K+
Sbjct: 297 GKPAPACGFAMGIERIL-ALMGENG---------AVGAHAIPDIYVVHQGEAAAEFSWKV 346

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRE 427
              L   G  V     G    +Q   AD  G     I+G   V   ++ IK  R    + 
Sbjct: 347 AESLRDDGLKVVLHSGGGNFKAQMKKADASGARFAAIIGEDEVVAGQISIKPLREAAEQI 406

Query: 428 DMSLEEVINYA 438
            + L       
Sbjct: 407 RVDLAGAAALL 417


>gi|325967867|ref|YP_004244059.1| glycyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323707070|gb|ADY00557.1| glycyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 591

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCRD 363
           +           G  R+V   +E ++        +  P  +AP K++++ I    +    
Sbjct: 434 ERFIPHDVEPSFGVDRIVYVTLEHAYTEVNGKPLLRLPPDIAPIKVAVLPIIKKQEYVS- 492

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               I+  LS VG    +DD G  IGS++A  D +G P  + +  K   DS V I+ R T
Sbjct: 493 IGRNIFRELSMVGVKAVYDDDGA-IGSRYAKYDSVGVPFAITIDDKTPIDSTVTIRDRDT 551

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
             +  +S+ ++I   +        ++
Sbjct: 552 KAQIRVSMNDIIKVITDAIFRRISII 577



 Score = 51.5 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            I   T + +     +      R LP    QI    R+E+ PR G++R REF   +   F
Sbjct: 167 YIRPETAQGMFVSFPKIFNLMGRKLPLGIAQIGKVGRNEISPRQGLIRLREFTQMEIEFF 226

Query: 164 DLTPEGSKHSYNKMFVSYLRI 184
              PE +K  Y       LRI
Sbjct: 227 -FDPENAKCPYLDELDVKLRI 246



 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 31/206 (15%)

Query: 24  KLMLRTGMIHQ---------HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMS 70
           +LM   G  +             G Y + PLG +   N+    R+            E+ 
Sbjct: 8   ELMSEGGFFYPSFEIYRSKAEVGGFYDYGPLGVELKRNIIEKWRKIFVYP-YQDFIVEIE 66

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    ++  SG  + +   ++       K        EE+          S +    
Sbjct: 67  TPIVMPKIVFEASGHVEHFTDAIVECTKCGRKFRADHLIEEEL-----GKRGISIKTEGL 121

Query: 131 TFYQIQLKFRD----------ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +  ++    RD          EL           F        D        +   MFVS
Sbjct: 122 SLEELDKLIRDYDIKCPVCGGELSSVKPFNLL--FQTTIGPYSDNIGYIRPETAQGMFVS 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL 206
           + +IF+ +G K     A+ G +G + 
Sbjct: 180 FPKIFNLMGRKLPLGIAQIGKVGRNE 205


>gi|269794690|ref|YP_003314145.1| glycyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
 gi|269096875|gb|ACZ21311.1| glycyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
          Length = 462

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 76/467 (16%), Positives = 151/467 (32%), Gaps = 70/467 (14%)

Query: 25  LMLRTGMIHQHS--KG----IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQS 76
           L  R G + Q     G     + + PLG +  +N+          +    + +    +  
Sbjct: 14  LAKRRGFVFQSGEIYGGSRSAWDYGPLGVELKENIKRQWWRTMVTSRDDVVGLDSAVILP 73

Query: 77  ADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
             +W  SG    +     E L    R  +  +     E+      +  +           
Sbjct: 74  RKIWEASGHVGVFTDPLTECLSCHKRFREDQMLEEFEEK------KGRVPENGLADIACP 127

Query: 134 QIQLKFRD-ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               + +  E R    ++++    ++D      L PE ++     +FV++  +   +G  
Sbjct: 128 NCGTRGQWTEPRDFNMMLKTYLGPVEDESGLHYLRPETAQ----GIFVNFANV---VGAS 180

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                   G IG    +E         T+ F   +   F  P       D       ++ 
Sbjct: 181 RKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGT-----DAEWHQYWIDL 235

Query: 252 WTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFG-------------TKYSL 296
            TA Y       +       P+ K    S R +++ + F F              T + L
Sbjct: 236 RTAWYVDLGISRDNLRLFEHPQEKLSHYSTRTVDIEYRFGFTGSEWGELEGIANRTDFDL 295

Query: 297 PMSATFKGAD------GKDHY--VQMGSYGIGAMRVVAAVIESSHDGKG----------- 337
              +   G D      GK+      +     G  R + A +  ++               
Sbjct: 296 KTHSEHSGKDLSYFDQGKNERWVPYVIEPAAGLTRSLMAFLAEAYTEDEAPNAKGGVDTR 355

Query: 338 --IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +     ++P K +++ + + ++        +   L K   +V +DD G  IG ++   
Sbjct: 356 TVLKLDPRLSPVKAAVLPL-SRNEQLSPKARDLATELRKHW-NVDFDDAGA-IGRRYRRQ 412

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +G P  + V    + D  V I+HR    +E ++L++V  Y   R 
Sbjct: 413 DEIGTPFCITVDFDTLDDQAVTIRHRDDMSQERVALDQVTAYLGARL 459


>gi|240103794|ref|YP_002960103.1| glycyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|259511936|sp|C5A1H0|SYG_THEGJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|239911348|gb|ACS34239.1| Glycyl-tRNA synthetase (glyS) [Thermococcus gammatolerans EJ3]
          Length = 570

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 6/140 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R    ++E+S     D   +     +AP +++++ + A  +  +
Sbjct: 430 GEKIVPHVLEPSFGIDRPFYLLLENSLVIEEDRTYLKLKKDMAPIEVAVLPLVAK-EPLK 488

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I+ +L K G  V +D+  + IG ++   D +G P  V + ++   DS V I+ R 
Sbjct: 489 SIAYEIFRKLQKAGFIVVYDE-KDTIGRRYLRYDEIGTPYCVTIDNQTPEDSTVTIRDRD 547

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +  +S+EE+ +      
Sbjct: 548 TREQVRVSIEELPSKLRELI 567



 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 80/241 (33%), Gaps = 69/241 (28%)

Query: 13  ENPRDAEIASHKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           E P   EI    LM R G       I+  S+G Y + PLG      +   IRE   R G 
Sbjct: 3   EKPDKYEIL-QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIEQKIREAFQREGF 61

Query: 67  IEMSVPTLQSADLWVESG-------------------RYDSYGKE--------------- 92
            E+  P +    +++ SG                   R D   +E               
Sbjct: 62  FELETPDITPEKVFIASGHVEKFVDPLVECRKCGARFRADHIIEEALGMDVEGLSAEELT 121

Query: 93  -------------------------MLRLA--DRNDKAMIYGP-THEEVMTDIFRSHIKS 124
                                    M         D+     P T + +  +  R +  +
Sbjct: 122 KLIREHDIRCPECGGELSDVWYFNLMFETKIGPYGDQKGYLRPETAQGIFVNFKRLNAFA 181

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
              LPF  +QI   +R+E+ PR G++R REF   +A  F    E     ++++    LR+
Sbjct: 182 RNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAEAEIFFNPSETEHPHFDEVKNEKLRL 241

Query: 185 F 185
           +
Sbjct: 242 Y 242


>gi|33597411|ref|NP_885054.1| histidyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|33573838|emb|CAE38146.1| histidyl-tRNA synthetase [Bordetella parapertussis]
          Length = 434

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 137/435 (31%), Gaps = 51/435 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G+   LP      +    I+R      G   +  P L+   L+    G   D   KEM  
Sbjct: 19  GMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTDIVEKEMYT 78

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N  ++   P     +      H   Y + P   Y I   FR E RP+ G  R R+
Sbjct: 79  FTDALNGDSLTMRPEMTAGIVRASIEHNMLY-DRPHRVYAIGPVFRHE-RPQRG--RYRQ 134

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D  +              M V   R++  LGL+ + +   S              A
Sbjct: 135 FHQIDVEALGFAGPDVDAE---MIVMLARLWKLLGLQDVRLELNS----------LGQPA 181

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    +    +         +      + S    V     P          +LFD L E 
Sbjct: 182 ERAAHRAALIEHLERHQDILDEDGRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEE 241

Query: 275 KRVSARGI-----EVGHIFYFGTK-------YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            R    G+     + G  +    +       Y+L +        G    V  G    G +
Sbjct: 242 SRSHFDGLCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLV 301

Query: 323 RVVA-----AVIESSHDGKGI-IWPDSV---APFKISLINIKAHDQVCRDACEKIYARLS 373
            ++      AV  +    + + +W  SV    P +  +  +   ++  R    ++  +L 
Sbjct: 302 ELLGGKPAPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGEEGQR-LAARVGEQLR 360

Query: 374 KVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIR 426
             G DV         G +  F  AD  G  + VI+G   V+     IKH          +
Sbjct: 361 DAGLDVIVHAGA--AGFKAQFKRADASGARIAVILGGDEVASRTASIKHLRGPVGADAAQ 418

Query: 427 EDMSLEEVINYASHR 441
           + + L ++ +    +
Sbjct: 419 QQVPLAQLADVLKSK 433


>gi|317036964|ref|XP_001398427.2| glycyl-tRNA synthetase 1 [Aspergillus niger CBS 513.88]
          Length = 738

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 8/146 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIE---SSHDGKG----IIWPDSVAPFKISLINIKAH 357
            + +++   +     G  R++ ++IE    S +G      + +P ++AP K+ ++ +  H
Sbjct: 573 ENVREYTPNVIEPSFGIGRILYSMIEQVYWSREGDEARGVLSFPPAIAPTKVLIVPLSTH 632

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q      +++  +L ++G     DD    IG ++A  D LG P  V V  + V D+   
Sbjct: 633 -QSFAPLVQRLTTKLRRMGVSNRVDDSSASIGKRYARNDELGTPFGVTVDFQSVKDNTFT 691

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R +  +   S +E+         
Sbjct: 692 LRDRDSTKQVRASEDEIAQAIKSLVE 717



 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-YNKMFV 179
           +PF    I   FR+E+ PR G++R REFLM +   F     G KH+ + ++  
Sbjct: 322 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHFVDPQGGKKHARFEEVKD 374



 Score = 46.8 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y + P G   L+N+  + R+        +E+    L   ++   SG  D +   M
Sbjct: 120 SGLYDYGPPGCAVLNNIVDLWRKHFVLEEDMLEVDCTMLTPHEILKTSGHVDKFADWM 177


>gi|256846211|ref|ZP_05551669.1| seryl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256719770|gb|EEU33325.1| seryl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 424

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +   ++   +G+   + ++M
Sbjct: 161 SGSRFVLYRGAAARLERALINFMLDVHTLEEGYTEHITPFMVKPEVCEGTGQLPKFEEDM 220

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 221 YKTTD----DMYLISTSEITMTNIHRKEILEQAELPKYYTAYSPCFRREAGSYGKDVKGL 276

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 277 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 335

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 336 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 379


>gi|217031825|ref|ZP_03437328.1| hypothetical protein HPB128_199g33 [Helicobacter pylori B128]
 gi|298735550|ref|YP_003728071.1| seryl-tRNA synthetase [Helicobacter pylori B8]
 gi|216946477|gb|EEC25079.1| hypothetical protein HPB128_199g33 [Helicobacter pylori B128]
 gi|298354735|emb|CBI65607.1| seryl-tRNA synthetase [Helicobacter pylori B8]
          Length = 415

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 10/168 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +  ++ +   + G   +  P L +  +   +G+   + +++ ++ + N   +
Sbjct: 170 FGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENEN---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++   I S  NLP         FR E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVTLTNLYNDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVEL 286

Query: 161 Y-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
                         Y  M  S   I   L L    ++  SG +G   S
Sbjct: 287 VAITHPKESDVMQEY--MLESASEILKALELPHRFVQLCSGDLGFSAS 332


>gi|255102013|ref|ZP_05330990.1| seryl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255307881|ref|ZP_05352052.1| seryl-tRNA synthetase [Clostridium difficile ATCC 43255]
          Length = 423

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 45  LGQKALDNVNA-IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +    +       G  E+  P + + + ++ +G+   + ++M ++       
Sbjct: 169 LGARLERALLNFYLDTNTKVNGYTEVIPPFMANRNSFLGTGQLPKFEEDMFKI---EGMD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+I  + I  +  LP  +      FR E     R   G++R  +F   +
Sbjct: 226 YFMIPTSEVPLTNIHANEILKFEQLPINYTAYTPCFRSEAGSAGRDTRGLVRQHQFNKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  PE S +   K+  +   +   L L    ++  +G +G   S ++ V 
Sbjct: 286 MVKIVA-PEESYNELEKLTNNAETMLQLLNLPYRVVKICTGDLGFTASFKYDVE 338


>gi|220932938|ref|YP_002509846.1| seryl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|254783031|sp|B8CZZ9|SYS_HALOH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219994248|gb|ACL70851.1| seryl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 422

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +   ++ + + +   + G  E+  P + ++D  + +G+   +  +M ++         
Sbjct: 169 GARLERSLISFMIDHHTQNGYTEIFPPFMVNSDSCIGTGQLPKFAGDMFKV---EGTDYY 225

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  +LP         FR E     R   G++R  +F   +  
Sbjct: 226 LIPTAEVPVTNLYRDEILNAEDLPVYHVAYSACFRAEAGAHGRDTRGIIRQHQFNKVELV 285

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            F + P+ S     K+  +   I   L L    +   +G 
Sbjct: 286 KF-VHPDKSFEELEKLTRNAEEILQMLELPYRVVTLCTGD 324


>gi|323137658|ref|ZP_08072734.1| seryl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322396955|gb|EFX99480.1| seryl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 427

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 10/158 (6%)

Query: 51  DNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             +   + +      G +E++ P L   D    + +   + ++     D         PT
Sbjct: 176 RALAQFMLDLHTGAHGYVEVNPPLLVRDDAMFGTAQLPKFREDQFAAGD----GYWLIPT 231

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDL 165
            E  +T++ R  I     LP         FR E     +   G++R  +F   +  S   
Sbjct: 232 AEVPLTNLVRESILDETQLPIRMTAGTYCFRAEAGAAGKDTRGMIRQHQFYKVELVSI-T 290

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           TPE S   + +M     R+   LGL    +   +G +G
Sbjct: 291 TPEQSLEEHERMTGCAERVLQTLGLPYRKVVLCTGDMG 328


>gi|78355243|ref|YP_386692.1| seryl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123768909|sp|Q316Z9|SYS_DESDG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78217648|gb|ABB36997.1| seryl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 427

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 14/200 (7%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             W     K    + A   +      G +E+  P + +A     +G+   + +++ +L D
Sbjct: 163 VLWH-WAAKLERALTAFFLDVHTREHGYMEVYPPAMVNAQTMTGTGQLPKFEEDLFKLRD 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                    PT E  +T++    +     LP  +      FR E     +   G +R  +
Sbjct: 222 S---EYYLIPTAEVPLTNLHSGEVVPEEKLPIAYTAQTQCFRSEAGSYGKDTKGFIRQHQ 278

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F   PE S     K+      +  +LGL    +   SG +G   +     E 
Sbjct: 279 FTKVEMVRF-AHPEKSFEELEKLRSHAEVLLQKLGLHYRVVTLCSGDMGFSAAKTYDLEV 337

Query: 211 IVLADTGETQVFCSKDFMDF 230
            +       ++    +  DF
Sbjct: 338 WLPGQDKYREISSCSNCTDF 357


>gi|254796923|ref|YP_003081760.1| seryl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254590159|gb|ACT69521.1| seryl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 415

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 13/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +     G  E  +P L   D   ++G+   + +E  R+    D  M
Sbjct: 165 KGARLFRVLKDFMLDHNTEHGHREYFLPYLVKEDAMYKAGQLPKFSQESFRV----DGGM 220

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  + +    +      LP         FR E     +   G++R  +F   + 
Sbjct: 221 RLVPTSEVTLLNFVSDNFFGEAELPLRMTSYSECFRSEAGSSGKDTKGIIRQHQFGKVEL 280

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVLADT 216
            S    PE S     +M      +  +L L    +   SG IG         E  + +  
Sbjct: 281 LSI-TEPEKSDEELERMLCIAEGLLQKLKLPYRVVNLCSGDIGFCSKKTYDIEVWIPSQC 339

Query: 217 GETQVFCSKDFMDF 230
              ++    +  DF
Sbjct: 340 CYREISSCSNCGDF 353


>gi|332520154|ref|ZP_08396618.1| glycyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332044713|gb|EGI80907.1| glycyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 523

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 106/343 (30%), Gaps = 66/343 (19%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   Q    FR+E+  R  + R REF   +   F + P 
Sbjct: 228 TAQGIFVNFLNVQKTGRMKIPFGIAQTGKAFRNEIVARQFIFRMREFEQMEMQ-FFIKP- 285

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                                              G     +    +T        K  +
Sbjct: 286 -----------------------------------GTQGEWYEHWKET------RMKWHL 304

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
              + +EN  F D   L    +              E        +  +        H  
Sbjct: 305 SLGMGAENYRFHDHEKLAHYADAAADIEFKFPFGFKELEGIHSRTDFDLK------AHEE 358

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGII 339
           + G K        F   D   +   +    IG  R+  AV         +E++     + 
Sbjct: 359 HSGKKLQ-----YFDHEDNASYTPYVLETSIGLDRMFLAVFSNALVEEELENNTTRTVLK 413

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P  +APFK +++ +   D    D  +KI   L K   +V +D+    +G ++   D  G
Sbjct: 414 LPAVLAPFKAAILPLVKKD-GLPDVAKKIVEDL-KWDFNVTYDEKDA-VGRRYRRQDANG 470

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            P  + V    + D+ V I+HR T  +  + +E++ +      
Sbjct: 471 TPFCITVDHDTLEDNTVTIRHRDTMEQSRVKIEDLKSIIKKEV 513


>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
 gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
          Length = 1665

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/444 (13%), Positives = 136/444 (30%), Gaps = 45/444 (10%)

Query: 36   SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             +G   + P      + + +  +E     G  E+  P ++S  L+V     +   +++  
Sbjct: 1091 PRGTRDFAPPLMLLRNWLFSHFKEVSRLFGFEEVDFPVVESEALYVRKAG-EEITQQLYN 1149

Query: 96   LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              D++ + +   P     +  +     KS    P  ++ I   +R E R   G  R RE 
Sbjct: 1150 FEDKSGRRLCLRPEITPSIARLIIQKGKS-LVFPLRWFTIGQCWRYE-RMTKG--RRREH 1205

Query: 156  LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDLSHEFIVL 213
               +   F +    ++     +  + + +F  +G     + +R  +  +   +   + V 
Sbjct: 1206 YQWNMDIFGVPGVEAEAE---LLAAIVTLFTNMGFTANDVRIRVSNRKVLQAVLDRYSVP 1262

Query: 214  ADTGE-----------------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             D                     Q           I             +      ++  
Sbjct: 1263 QDKFNSVCVVVDKINKISKEEVDQQLMDLGLSSTAINGIRHAILLKNLDDIQELIGSSSE 1322

Query: 257  AATSDVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
            A         L  +   +   V   GI  G  +Y G  +            GK       
Sbjct: 1323 AFLEMKKLFALSKAYGYDEWLVVDLGIVRGLSYYTGIVF-EAF-----DTQGKFRAICGG 1376

Query: 315  GSYGIGAMRVVAAVIESSHDGKG------IIWPDSVAPF---KISLINIKAHDQVCRDAC 365
            G Y           I +   G G      ++   +++P    ++  +     +++   AC
Sbjct: 1377 GRYDKLISNFGGPSIPACGFGFGDAVIVDLLNECNLSPVLGHEVDDVVFVLDEELRCHAC 1436

Query: 366  EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
              + +RL   G  V      +++   F  A  +     +++G +   +  V +K  +T  
Sbjct: 1437 NIV-SRLRSAGRTVDMILENKKLKWVFNYASRIDAKRMILLGIREWEEGNVRVKDLVTRE 1495

Query: 426  REDMSLEEVINYASHRFSNNRPVL 449
              D+ + E++          +  L
Sbjct: 1496 ETDVKVAELVPRVPKEVQRGQGKL 1519


>gi|255533134|ref|YP_003093506.1| glycyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255346118|gb|ACU05444.1| glycyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 495

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 112/355 (31%), Gaps = 53/355 (14%)

Query: 93  MLRL----ADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           M            + +   P T + +  +           +PF   QI   FR+E+  R 
Sbjct: 171 MFSTQFGAMAEGSEEVYLRPETAQGIFVNFLNVQKSGRMKIPFGIAQIGKAFRNEVIARQ 230

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            +MR REF   +   F    E  K      + +Y +            R +     G  +
Sbjct: 231 FIMRMREFEQMEMQFFVRPGEDKK------WFAYWK----------EARLKWHLALGTPA 274

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            ++             +   ++F  P    + + I S           Y+     + +  
Sbjct: 275 EKYRYHDHVKLAHYANAATDIEFEFPFGFKEVEGIHSRTDFDLSQHQEYSGKKMQYFDND 334

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRV 324
            D   +        + +         + L +   F+  D   G               R 
Sbjct: 335 LDETGKPYGNYVPYV-IETSIGLDRMFLLTLINAFEEQDLSEGDKQD----------SRT 383

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +            +     +AP+K+++  +   D    +    I   L K+  +  +++ 
Sbjct: 384 L------------LRLHPCLAPYKVAIFPLTKKD-GLPEKARAIMDNL-KLDFNCIYEEK 429

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVIN 436
              IG ++   D +G P  V V  + + D  V I+HR T  ++ +    L+E+I 
Sbjct: 430 DA-IGKRYRRQDAIGTPFCVTVDHQTLEDDTVTIRHRDTMEQQRIEIKHLDELIA 483


>gi|34498992|ref|NP_903207.1| histidyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|39932055|sp|Q7NS89|SYH_CHRVO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|34104842|gb|AAQ61199.1| histidyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 423

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 121/433 (27%), Gaps = 44/433 (10%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYG 90
           +Q  KG+   LP      +     +R+     G   +  P ++   L+V S G   D   
Sbjct: 5   YQAVKGMNDVLPAESYQWEYFEEALRKLLADYGYQNIRTPIVEGTPLFVRSIGEVTDIVE 64

Query: 91  KEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM    D  N  ++   P            H   Y   P  +Y +   +R E RP+ G 
Sbjct: 65  KEMYTFVDSLNGDSLTLRPEGTAGTLRAVVEHNLLYNATPKLWY-MGPMYRHE-RPQKG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F      +  L           M     R   RLG+    +R E   I    + E
Sbjct: 122 -RYRQFHQVGVEALGLAGPDIDAEIIAMTADLWR---RLGISQY-VRLE---INSLGNAE 173

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A   E  +   +  +D                    +       A +         
Sbjct: 174 --ERAAHREALIAYLERHVDILDEDGKRRMHTNPLRVLDTKNPALQEMANAAPKLSDYLG 231

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGADGKDHYVQMGS-YGIGAMRVVA- 326
                     +      I   G +Y   P          +  +  + S  G         
Sbjct: 232 EESRAHYEGWKA----MIAALGIEYIENPRLVRGLDYYNRSVFEWVTSELGAQGTICAGG 287

Query: 327 ---AVIESSH--DGKGIIWPDSV--------------APFKISLINIKAHDQVCRDACEK 367
               +IE        GI +   +              A   + +  +    +       K
Sbjct: 288 RYDGLIEQLGGKAASGIGFGMGMERVLLLLQDKGLLPAQRSVDVFLVNQG-EGAGLYSMK 346

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIR 426
           +   L   G  V          SQ   AD  G    +IVG   +   +V +K  R    +
Sbjct: 347 LAQTLRAAGYSVVQHLGEASFKSQMKKADGSGAEFALIVGENEIQAGQVVVKALRADVAQ 406

Query: 427 EDMSLEEVINYAS 439
           + ++ + V+   +
Sbjct: 407 QTVAADAVLATLA 419


>gi|332980824|ref|YP_004462265.1| seryl-tRNA synthetase [Mahella australiensis 50-1 BON]
 gi|332698502|gb|AEE95443.1| seryl-tRNA synthetase [Mahella australiensis 50-1 BON]
          Length = 424

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 9/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +   G +    +  ++ +    + G +E+  P L      V +G+   +  +  +  D 
Sbjct: 164 FYKGAGARLERALVNLMLDMHTRQHGYVEVFPPFLVHRRSMVGTGQLPKFEDDAFKTVDP 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+++R  I   ++LP         FR E     R   G++R  +F
Sbjct: 224 ---EYFLIPTAEVPVTNMYRELILDAKDLPIKHVAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +   F L PE S     K+      +   L +    +   +  +G   + ++
Sbjct: 281 NKVELVKFTL-PEDSYDELEKLTHDAEEVLQALEIPYRVVAICTADLGFAAAKKY 334


>gi|313473046|ref|ZP_07813533.1| serine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|313448839|gb|EEQ67733.2| serine--tRNA ligase [Lactobacillus jensenii 1153]
          Length = 423

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 13/218 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E  + G  E+  P L + D    +G++  + +++  + D
Sbjct: 151 FVYYKGAGALLERAVYNFFLDENTKEGYTEVIPPYLVNDDSMQGTGQFPKFTEDVYTIVD 210

Query: 99  RNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D          PT E  + + FR  I   + LP     +   FR E     R   G++
Sbjct: 211 NDDPDKPLNLTLIPTAEVPLVNYFRGDIVDGKKLPINVTALTPAFRSEAGSAGRDTRGLI 270

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +       PE S +  +++  +   +  +LGL    +   +G      +   
Sbjct: 271 RMHQFNKVEMVKV-CKPEESWNELDRLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 329

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             E  + A     ++    +  DF        + D   
Sbjct: 330 DLEVWMPAQNKYREISSCSNCTDFQARRAQIRYRDEDG 367


>gi|262371651|ref|ZP_06064930.1| histidyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262311676|gb|EEY92761.1| histidyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 430

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/446 (14%), Positives = 134/446 (30%), Gaps = 61/446 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP    A  ++   +    +  G  ++ +P ++   L+  +     D   KEM 
Sbjct: 8   KGFNDTLPSQTAAWRSLEQQLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMY 67

Query: 95  RLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+ +  +++   P            H       P  +Y +   FR E +P+ G  R 
Sbjct: 68  TFFDKGNPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWY-VGPMFRYE-KPQKG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F      +F +           M     R+++R+G+    ++ E   +G     E   
Sbjct: 124 RQFHQFGVETFGVATPDIDAEIILM---TARLWNRMGVVD-KVQLELNTLG-----ETDE 174

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNEKLFDS 270
             +     V    +  D                  +S +E           +H+    DS
Sbjct: 175 RTEYRNALVAFLNEHKDALDEDSQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDS 234

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA----MRVVA 326
           L    ++     + G  F    K    +   +     +     +GS G          + 
Sbjct: 235 LNHFNQLQQYLTDAGIQFVINQKLVRGLDY-YNKTVFEWTTTMLGSQGTVCAGGRYDGLV 293

Query: 327 AVIESSHDGKGIIWPDSV---------------APF---KISLINIKAHDQVCRDACEKI 368
             ++   D        ++                P    ++ L+   A+        E++
Sbjct: 294 GQLKGKADQSVPAVGFAMGMERLLLLLEQVEQAKPVRDCEVFLLAEPAYQAKALVLAEQV 353

Query: 369 YARLSKVGCDVFWDDMGEQIGSQ----------FAVADLLGFPLQVIVGSKFVSDSKVEI 418
              L  V            I  +             AD  G    VI+G +     ++ +
Sbjct: 354 RDELEAV---------NSSIRFKTGSQGSMKSQMKKADQSGAIYAVILGEREWESQQLLV 404

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K   TG +  +++ E+  +   +F  
Sbjct: 405 KELATGEQSQVAVTELTAFLLEKFKQ 430


>gi|262305757|gb|ACY45471.1| glu- + pro-tRNA synthetase [Leiobunum verrucosum]
          Length = 134

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S     T +  +  +  YV   S+G+   R +  ++    D  
Sbjct: 15  SGRAIQGATSHHLGQNFSKMFDITXEDPETTEKSYVYQNSWGLT-TRTIGVMVMIHGDNT 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G+I P +VA +++ ++         +A       +C+     L+  G     D       
Sbjct: 74  GLILPPNVACYQVVIVPCGITXSLSEADKDNLYASCKAFEQDLTNKGIRCKGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|307354815|ref|YP_003895866.1| seryl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307158048|gb|ADN37428.1| seryl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 425

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEML 94
             G Y            +  +  +     G   +  P + +   +   G  D S  + ++
Sbjct: 162 GAGFYILKGRLALMDLALQRLAIDLLAERGYTPVMPPYMMNRAAYE--GVTDLSDFENVM 219

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVM 150
              D  D+      T E  M  ++   I   ++LP     I   FR E+        G+ 
Sbjct: 220 YKIDGEDE--FLIATSEHPMAAMYMDEIFEEKDLPLRLAGISTCFRREIGSHGLDTKGLF 277

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   + + +    E S   + ++  +   IF  L L    +   +G IG   +   
Sbjct: 278 RVHQFNKVEQFIY-CKQEDSWRLHEELLKNAEDIFRMLKLPYHVVNICTGDIGTVAAKKY 336

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             E  +  +    +V    +   +     N    D           
Sbjct: 337 DIEVWMPREETYREVVSCSNCTAYQAVRLNIKVRDPHEFEKKDYVH 382


>gi|210632315|ref|ZP_03297282.1| hypothetical protein COLSTE_01176 [Collinsella stercoris DSM 13279]
 gi|210159631|gb|EEA90602.1| hypothetical protein COLSTE_01176 [Collinsella stercoris DSM 13279]
          Length = 438

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 135/458 (29%), Gaps = 67/458 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV--ESGRYDS 88
           M  Q ++G    +    +A   +  I +E     G   +  P ++  D++V       D 
Sbjct: 1   MQAQKAEGTKDLIGRDMRAWQRMQRIAQETFEPYGFDAIETPAIEQLDVFVHGIGQSTDV 60

Query: 89  YGKEMLRL-------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR----NLPFT 131
             KEM R+              D   KA        E    + RS +++      + PF 
Sbjct: 61  VRKEMFRVFSGANFARVLEEGTDTKLKAKQRLALRPEGTAGVVRSVVENNLVPQGSTPFK 120

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  +  FR E RP+ G  R R+F              +      M    + +F RLG  
Sbjct: 121 AWYAEAMFRGE-RPQKG--RLRQFHQVGIEWLGAPDPAADAECIIML---MELFKRLGFD 174

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +R     +G D S      A     + F      +           + +        
Sbjct: 175 LSKLRLLINSMG-DPS---CRPAYRETVRQFILDHANEMCDECRERAELNPLRAFDCKNP 230

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-------GTKY---------- 294
                   + +  + L D   E+     R ++   I Y        G  Y          
Sbjct: 231 HCHEVMQGAPLMRDCLCDDCREHYEQVKRYLDAAGIEYVEDPTLVRGLDYYTRTVFEVEA 290

Query: 295 ----------SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                             +   GK       + G      +A  +E+     G   P   
Sbjct: 291 PGAGVGSIGGGGRYDGLVELEGGKPTPGVGFAVGF---ERIALALEAFGVELGGQEP--- 344

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
                S + I       R     +   L  +G     D  G+ + +QF  AD LG    V
Sbjct: 345 -----SCVFIANAGADLRGEVFALSRELRGLGVRTECDYQGKSLKAQFKQADKLGASHIV 399

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           I+G   ++  KV++++  T     +   +  +  +   
Sbjct: 400 IIGGDELAAGKVKLRNMGTHDERLVERADAASAIAQLL 437


>gi|163940700|ref|YP_001645584.1| seryl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163862897|gb|ABY43956.1| seryl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 424

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + +      G  E+  P + ++D  + +G++  + +++  L 
Sbjct: 163 FVYYNGLGARLERAVANFMLDLHVEEHGYTEVIPPFIVNSDSLIGTGQFPKFKEDVFTLK 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D +       PT E  + + +R  I +   LP  F      FR E     R   G++R  
Sbjct: 223 DTD---YSLIPTAEVPLANYYRDEILNGAELPINFTAHTPCFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +F   +   +   PE S     K+  +  R+   L L    +   +  I
Sbjct: 280 QFSKVEMVKY-TKPEESYDELEKLTANAERVLQLLRLPYRVIVLCTADI 327


>gi|311894853|dbj|BAJ27261.1| putative histidyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 425

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 124/436 (28%), Gaps = 52/436 (11%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKE 92
             KG Y  LP        +   +     R G   +  P  +   L+        D   KE
Sbjct: 11  APKGTYDLLPPESATFLAIRERLSAPARRAGYGYIETPVFEDVKLFSRGVGESTDIVTKE 70

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRDELRPRFGVM 150
           M  L  +    +   P                ++   LP   +     +R E R + G  
Sbjct: 71  MYNLTTKGGDELALRPEG-TASVLRAALQANLHKQGNLPVKLWYSGSYYRYE-RAQKG-- 126

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GP--- 201
           R R+F    A +              + +     F  LGL+   +   S       P   
Sbjct: 127 RYRQFAQVGAEAIGAEDPALDAE---LIILADDAFRSLGLRDYRLLLNSLGDQRCRPAYR 183

Query: 202 -------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                   G DL  E    A+    +V   K         +     D +           
Sbjct: 184 AALVAFLAGLDLDEETRRRAEINPLRVLDDKRESVQAQLGDAPKLRDHLCEECKAYDAKV 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSAR-GIEVGHIFYFGTKYSLPMSATFKGAD---GKDH 310
               T++         L        R   E  H    G + ++     + G     G   
Sbjct: 244 RELLTANGVAFVDDPKLVRGLDYYTRTTFEFVHDG-LGAQSAIGGGGRYDGLSEMIGGPA 302

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +G + +G  R   A+     +G  +  P + + + ++L       +  ++       
Sbjct: 303 LPSVG-WALGVDRSYLAL---EAEGVALDLPAATSVYVVAL------GEEAKNVLFAKVV 352

Query: 371 RLSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            L + G            G +        AD  G    +I G + +++  V++K   TG 
Sbjct: 353 ELRRAGVATDLA-----FGVKSIKNAMKSADRSGARFALIAGDRDLAEGVVQLKDLTTGE 407

Query: 426 REDMSLEEVINYASHR 441
           +  ++L  ++     +
Sbjct: 408 QTPVALAALVTTLKEK 423


>gi|310792722|gb|EFQ28183.1| seryl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 456

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 6/174 (3%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G      +     E     G      P   + +   ++ + + + +E+ ++   + +  
Sbjct: 176 YGLFLNQALINYGLEFLFNKGYTPNQPPFFMNRNQMAKTAQLEQFDEELYKVTG-DGEEK 234

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
               T E+ ++ +          LP  +      FR E     +  +G+ R  +F   + 
Sbjct: 235 YLIATSEQPLSALHSEEWLQASQLPIKYAGYSTCFRKEAGKHGKEAWGLFRVHQFEKIEQ 294

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           + F    E  KH +++M  +    +  LGL    +   SG +    + ++ + A
Sbjct: 295 FVFCKAEESWKH-FDEMIAASEEFYKSLGLPYRVVSIVSGALNNAAAKKYDLEA 347


>gi|228992057|ref|ZP_04151993.1| Histidyl-tRNA synthetase 1 [Bacillus pseudomycoides DSM 12442]
 gi|228767786|gb|EEM16413.1| Histidyl-tRNA synthetase 1 [Bacillus pseudomycoides DSM 12442]
          Length = 441

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 139/451 (30%), Gaps = 70/451 (15%)

Query: 31  MIH---QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY 86
           MI    ++ KG   +LP  Q   + +     E   R G   +  PTL   +L   + G  
Sbjct: 1   MIQMDVRNVKGTKDYLPAEQLLRNKIKCACEETFERYGCKPLETPTLNMYELMAYKYGGG 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
               KEM  L D+ ++ +            +   +      LPF  Y+I   FRD     
Sbjct: 61  AEILKEMYTLRDQGNREIALRYDLTIPFAKVVAMNPDIR--LPFKRYEIGKVFRD---GP 115

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------A 197
               R REF+  D     +  E        M +++  +F  L L                
Sbjct: 116 IKQGRFREFIQCDVDIVGV--ESVIAEAELMAMAF-DLFKTLNLDVTIQYNNRKLLTGIL 172

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ----WT 253
           +S  I  + +++ I+  D  E ++       D        D  +++              
Sbjct: 173 KSVEIQDEQTNDVILSLDKLE-KIGIDGVRKDLQSRGIVNDTIEVVCHTVESCMTLELNE 231

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF----------YFGTKYSLPM----- 298
                ++ +  E + +     + + A GI+   +F          Y GT Y + +     
Sbjct: 232 FKQIFSNSLVTEGINELQQLQQYLLALGIQDNTVFNPFLARGLTMYTGTVYEIFLTDGSI 291

Query: 299 ------SATFKG------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                    +         D   +     S+G+     +   +                 
Sbjct: 292 TSSIGSGGRYDNIIGAFRNDNTSYPTVGISFGLDV---IYTALTQKETESTCA------- 341

Query: 347 FKISLINIKAHDQVCRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
             I +I I    +     C +I   L  K    V  +  G ++      A+    P  +I
Sbjct: 342 -DIFIIPINTEVE-----CLRITQLLRSKSTFKVELELAGRKLKRSLNYANKENIPYVLI 395

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +G   +S   + +++   G    + L  + +
Sbjct: 396 IGDTEISTETIVLRNMKEGTEIKLPLSCIED 426


>gi|91775482|ref|YP_545238.1| seryl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|123078899|sp|Q1H290|SYS_METFK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|91709469|gb|ABE49397.1| seryl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 432

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 17/201 (8%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  GQ A     +   + + Q  + G  E   P + +AD    +G+   +  ++
Sbjct: 157 AGARFTLMRGQIARLHRALAQFMLDTQTEQHGYTECYTPYIVNADSLRGTGQLPKFEADL 216

Query: 94  LR-----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----R 144
                      +++A    PT E  +T+  R  I    +LP         FR E     R
Sbjct: 217 FAAQKGGQEGESNEAFYLIPTSEVTLTNTVRDEIVPLDSLPIKLTAHTPCFRSEAGSYGR 276

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G++R  +F   +       PE S  +  +M      +   LGL    +   +G +G 
Sbjct: 277 DTRGMIRQHQFDKVEMVQI-THPERSYDALEEMVGHAEHVLQALGLPYRVVLLCTGDMGF 335

Query: 205 DLSH----EFIVLADTGETQV 221
             +     E  + A     ++
Sbjct: 336 GAAKTYDLEVWLPAQNTYREI 356


>gi|258647930|ref|ZP_05735399.1| serine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260851769|gb|EEX71638.1| serine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 424

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 104/316 (32%), Gaps = 66/316 (20%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++  G      +     +E  + G  E+  P + +A     +G+      +M  
Sbjct: 164 GAGFPVYIGQGAHLQRALINFFLDEARKAGYTEIMPPIVVNAASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               +   +   PT E  +T+I+R  I   +NLP         FR E     +   G+ R
Sbjct: 224 CEVDD---LYLIPTAEVPVTNIYRDVILEEKNLPIKNCAYTECFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF   +    D  PE SK S+ +M      +  +L L    +       GGD+S    
Sbjct: 281 LHEFSKIELVRID-KPEHSKQSHQEMLDHVEGLLQKLELPYHILLLC----GGDMS---- 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     F S    DF + S                Q      ++    +    + L
Sbjct: 332 ----------FTSSLCYDFEVYS--------------EAQKRWLEVSSVSNFDTYQANRL 367

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
               R   + IE+ H    G+  +LP                         R++AA++E+
Sbjct: 368 QCRYRKQDKKIELCHTLN-GSALALP-------------------------RIMAALLEN 401

Query: 332 SHDGKGIIWPDSVAPF 347
                GI  P ++ P+
Sbjct: 402 FQTPDGIRIPKALQPY 417


>gi|225629896|ref|YP_002726687.1| seryl-tRNA synthetase [Wolbachia sp. wRi]
 gi|225591877|gb|ACN94896.1| seryl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 432

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 16/192 (8%)

Query: 23  HKLMLRTGMI-HQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQ 75
           ++L  + G+I  + +    G    +  GQ A     +   + E   N  G  E+  P L 
Sbjct: 148 YELGEKLGLIDFEQAARISGSRFTILKGQLAKLGRALINCMLEMHVNEFGYTEVYHPALV 207

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +     G+   +  +     D         PT E  +T++    I   + LP  F   
Sbjct: 208 KNEAMYNVGQLPKFSDDSYLTTDELR----LIPTSEVFLTNLVADKIMEEKELPIRFTAY 263

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     R   G++R  +F   +  S   T + S     +M      I  +L L 
Sbjct: 264 SECFRKEAGSAGRDTRGMIRQHQFGKVELVSI-TTEDQSNDELERMTSVAEEILKKLELP 322

Query: 192 SIPMRAESGPIG 203
              M   SG +G
Sbjct: 323 YRVMLLCSGDMG 334


>gi|184156832|ref|YP_001845171.1| histidyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|332873247|ref|ZP_08441204.1| histidine--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|229558636|sp|B2I3E6|SYH_ACIBC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|183208426|gb|ACC55824.1| Histidyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|322506724|gb|ADX02178.1| hisS [Acinetobacter baumannii 1656-2]
 gi|323516598|gb|ADX90979.1| histidyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332738759|gb|EGJ69629.1| histidine--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 430

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 67/439 (15%), Positives = 143/439 (32%), Gaps = 47/439 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM 
Sbjct: 8   KGFNDVLPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMY 67

Query: 95  RLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+ +  +++   P            H       P  +Y +   FR E +P+ G  R 
Sbjct: 68  TFFDKGNPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWY-MGPMFRYE-KPQKG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--------- 203
           R+F      +F +     +     M     R++ R+G+ +  ++ E   +G         
Sbjct: 124 RQFHQFGVETFGVATPDIEAEVILM---TARLWKRMGV-AHMVQLELNTLGEKEERTEYR 179

Query: 204 -----------GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                        L  +      T   ++  SK      I        D +  +S+    
Sbjct: 180 NALVAFLNEHKDALDEDSQRRLTTNPLRILDSKIESTQKILENAPKLYDFLKEDSLSHFQ 239

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK---- 308
                 T+      +   L        + +        G++ ++     + G  G+    
Sbjct: 240 QLQDYLTAAGIKFVINQKLVRGLDYYNKTVFEWTTTALGSQGTVCGGGRYDGLVGQLKGK 299

Query: 309 -DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            D  V    +G+G  R++  ++    +   I+           L+   A+        E+
Sbjct: 300 ADQSVPAVGFGMGMERLL--LLIEQVEQAEIVRDCE-----AFLVAEPAYQSKALVLAEQ 352

Query: 368 IYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +  +L        +     G  + SQ   AD  G    +I+G +     ++ +K   T  
Sbjct: 353 LRDQLEAANSNIRIKTGSQG-SMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAE 411

Query: 426 REDMSLEEVINYASHRFSN 444
           +  ++L E++ +   +F+ 
Sbjct: 412 QSQVALAELVPFLIEKFTK 430


>gi|288561203|ref|YP_003424689.1| seryl-tRNA synthetase SerS [Methanobrevibacter ruminantium M1]
 gi|288543913|gb|ADC47797.1| seryl-tRNA synthetase SerS [Methanobrevibacter ruminantium M1]
          Length = 425

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
           +      E    G I +  P     ++  E+     + + + ++    ++ +    T E+
Sbjct: 176 LIQFALNELEERGYIPLQTPFFVKGEVAAETSELGEFEETLYKV---ENEDLYLIATAEQ 232

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPE 168
            +  + R  I +  +LP  +  +   FR E     +   G+ R  +F   + + F  TPE
Sbjct: 233 TLAALHRDEIINPEDLPMRYCALSTCFRKEAGSHGKDTLGIFRVHQFEKIEQFIFS-TPE 291

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            SK+ ++++      I+ +LGL    +   S  +  + + ++ + A
Sbjct: 292 ESKNEHHRLLEVTEDIYKKLGLPYQIVAIVSSALNDNAAIKYDLEA 337


>gi|229134174|ref|ZP_04262992.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST196]
 gi|228649282|gb|EEL05299.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST196]
          Length = 431

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 67/442 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   DL   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYDLMSYKYGGGDEILKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LKDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLEVTIQYNNRKLLNGILQAINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D        +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLERGITVEMADTICTTVLSCLKLTIADFKETFNNPL 238

Query: 267 LFDSLPENKRVSAR----GIEVGHIF----------YFGTKYSLPM-SATFKGA------ 305
           + D + E +++       GI    IF          Y GT Y + +  A+   +      
Sbjct: 239 VADGVDELQQLQQYLRALGINENTIFNPFLARGLTMYTGTVYEIFLTDASITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 299 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADLFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              Q     C +I  +L       V  +  G ++      A+    P  +I+G + +S  
Sbjct: 348 TELQ-----CLQIAQQLRSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTE 402

Query: 415 KVEIKHRLTGIREDMSLEEVIN 436
            V +++   G    + L  + N
Sbjct: 403 TVVLRNMKEGTEVKIPLSSLEN 424


>gi|300767807|ref|ZP_07077717.1| serine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494792|gb|EFK29950.1| serine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 425

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 97/308 (31%), Gaps = 69/308 (22%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G K    V     ++    G  E+  P + + +    +G++  + ++  ++     + + 
Sbjct: 170 GAKLERAVYNFFLDQHEAEGYTEVLPPYMVTDESMYGTGQFPKFKEDAFQITT---QDLT 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + + +R  +     LP  F  +   FR+E     R   G++R  +F   +  
Sbjct: 227 LIPTAEVPLVNYYRDEVIPAEKLPVYFTALSPAFREEAGSAGRDTKGLIRLHQFNKVEMV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F   PE S     K+  +   +  +LGL    +   +G +                   
Sbjct: 287 KF-TKPEDSWDELEKLTNNAESLLKKLGLPYHVITLTTGDM------------------S 327

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           F +    D  +      F +      I              H +   D            
Sbjct: 328 FTAAMTHDLEV-----WFPEQDKYREISSCSNCTDFQARRAHIQYRDD------------ 370

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGII- 339
                                   DGK  +V  +   G+   R VAA++E+  +  G + 
Sbjct: 371 ------------------------DGKLQFVHTLNGSGLAVGRTVAAILENYQNEDGTVT 406

Query: 340 WPDSVAPF 347
            PD + P+
Sbjct: 407 IPDVLVPY 414


>gi|226947237|ref|YP_002802328.1| serine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|254783018|sp|C1FPI7|SYS_CLOBJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226841928|gb|ACO84594.1| serine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 426

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 17/229 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V +   +    +    E+  P + +    + +G+   + ++  +++  
Sbjct: 167 FYKGLGARLERAVISYFLDTHTEKHDYTEILPPYMVNRTSMIGTGQLPKFEEDAFKIS-- 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+++R  I     LP         FR E     R   G++R  +F
Sbjct: 225 -EDDYFLIPTAEVPVTNLYRDEILKGDELPLKHVAYSACFRSEAGSAGRDTRGLVRQHQF 283

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +   F   PE S     K+      +   LG+    +R   G +G   + ++     
Sbjct: 284 NKVELVKF-TKPEQSYEELEKLTNDAETVLKELGIPYRVVRICKGDLGFTAALKY----- 337

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                      +  +   S  ++F+D  +  + +       A    VH 
Sbjct: 338 ---DLEVWMPSYNRYVEISSCSNFEDFQARRANIRYKEDAKAKPQYVHT 383


>gi|322383128|ref|ZP_08056955.1| seryl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321152790|gb|EFX45416.1| seryl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 409

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G +E+  P L + D    +G+   + +++ R+ 
Sbjct: 146 FVFYKGLGARLERALLNFMMDLHSDEHGYMEILPPYLVNRDSLTGTGQLPKFAEDVFRI- 204

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             ++      PT E  +T+  R  I +   LP  F      FR E     R   G++R  
Sbjct: 205 --DNSDYFLIPTAEVPVTNYHRDEILTEEQLPGNFVAFSACFRSEAGAAGRDTRGLIRQH 262

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +     + PE S      +     R+   L L    +   +G +G   +     E
Sbjct: 263 QFNKVELVKL-VKPEDSYKELEILTSHAERVLQLLHLPYRVLTLCTGDLGFSSAKTYDLE 321

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +     ++    +F DF     N  F
Sbjct: 322 VWLPSSGTYREISSCSNFEDFQARRSNIRF 351


>gi|312220920|emb|CBY00861.1| similar to glycyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 658

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAPFKISLINIKAH 357
            + +++   +     G  R+  A+ E  +           + +P +VAP K+ ++ + +H
Sbjct: 493 ENVREYTPNVIEPSFGIGRIFYALCEHVYWTREQDKARGVLSFPPAVAPTKVLIVPLSSH 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   + + ++L  +G     D  G  IG +++  D LG PL + V  + V D+   
Sbjct: 553 PD-FSPFVQTLRSKLRSIGISSRIDASGASIGKRYSRNDELGTPLGITVDFQSVKDNTFT 611

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R +  +   S++E+I   S+  +
Sbjct: 612 LRDRDSTEQVRASIDEIIAAISNIVN 637



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           + +PF    I   FR+E+ PR G++R REFLM +   F + PEG
Sbjct: 240 QQMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEG 282



 Score = 37.2 bits (85), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G    DN+  + +         +++    L   ++   SG  D +   M
Sbjct: 39 AGLYDYGPAGTALTDNIVDVWKRHFVLEEDMLQVDCTMLTPHEVLKTSGHVDKFADWM 96


>gi|325847052|ref|ZP_08169878.1| histidine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481024|gb|EGC84069.1| histidine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 432

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 136/445 (30%), Gaps = 65/445 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q   D++  II E       + +  P ++  D+    G  ++  K++  +
Sbjct: 10  AGVMELLPDDQLVFDHIKQIIEETFLSYQFLPIDTPAIEKNDILFAKGGGET-EKQIFGI 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D + K M        V    + S   S  N PF  YQI   +R E R + G  R +EF 
Sbjct: 69  -DSSKKDMSLR-FDLTVPLARYVSEHFSDLNFPFKRYQIGKVYRGE-RNQKG--RYKEFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------------- 201
             D            +      V Y  IF +L  K I     +                 
Sbjct: 124 QCDIDIIGNDSLSIHNDALLPKVIY-DIFQKLDFKGIKFHINNRKLLNGFFESIEISDKE 182

Query: 202 -----------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      IG + + E +     GE +    K         +N +  + +    + +
Sbjct: 183 EVLRTIDKKAKIGDEKTKELLTELC-GEDKAL--KLMELINNKRDNKELLEYLESLDLND 239

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS----------- 299
            +        +V++  +   + +   +    I  G  +Y  T Y   +            
Sbjct: 240 NYKLGLRELKEVYDYMIKFGIDDESIMIDLSITRGLDYYTSTVYETFLDGYESIGSVCSG 299

Query: 300 --ATFKGADGKDHYVQMGSYGIGAMRVVAAV----IESSHDGKGIIWPDSVAPFKISLIN 353
                   +     +      IG  R+   +    +   +                 +I 
Sbjct: 300 GRYENLAGNFSKQNLPGVGLSIGLTRLFYQLQELGLLEKYREDF---------TDCLIIP 350

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +   D+        I   L   G  V       +   +   AD +G    +I+G +   +
Sbjct: 351 M---DEKLNFYAIDIGNDLKNKGYKVDIYLEDGKFKKKINYADKIGVKKVIIIGQEEYEN 407

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
             V +K+   G +  + +E++ +Y 
Sbjct: 408 KMVSVKNMEDGNQVSVKIEDIGDYL 432


>gi|300864649|ref|ZP_07109507.1| Histidyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300337398|emb|CBN54655.1| Histidyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 427

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/424 (14%), Positives = 121/424 (28%), Gaps = 33/424 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEML 94
            G    L         + AI RE   +    E+  P  +   L+    G   D  GKEM 
Sbjct: 8   PGTRDILSPEIGYWQRLEAIAREILAKAAYREIRTPIFEQTSLFERGIGEATDVVGKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ D+++   P     +   F  +    +      +     FR E RP+ G  R R+
Sbjct: 68  TFKDKGDRSITLRPEGTAGVVRSFIENSLDAQGGLQRLWYTGPMFRYE-RPQAG--RMRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F              +      +      I   LGL ++    +   +G     +    A
Sbjct: 125 FHQLGVEVLGTADPRADVE---VIAIATDILKTLGLTNLG--LDLNSVGNKEDRQNYRQA 179

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  +  +   D            + S N   ++  A   +  D   E       + 
Sbjct: 180 LIDYLTPYKEELDQDSQNRLIRNPLRILDSKNPRTQEIAADAPSILDYLGENSRRHFEKV 239

Query: 275 KRVSARGIEVGHIFYF------GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRV-- 324
           +++     ++G  +        G  Y               +      G Y      +  
Sbjct: 240 QQMLT---DLGIKYQLNPRLVRGLDYYTYTAFEIISDDLGAQATVCGGGRYDGLVKELGG 296

Query: 325 -------VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
                   A  +E        + P         +++     +V       +  +L   G 
Sbjct: 297 PDTPAVGWAMGLERLILLLQQLQPAPTNTLDFYIVSRGDRAEVQ---AVLLAQKLRSFGF 353

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +  D  G     QF  AD  G    +I+G +      V++K   +  +  ++  +++  
Sbjct: 354 SLEIDLSGSAFKKQFGRADRSGAVACLIIGDEEAESHSVKLKWMASKEQSAIAQSDLLEK 413

Query: 438 ASHR 441
           A   
Sbjct: 414 AEEL 417


>gi|254303605|ref|ZP_04970963.1| serine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323797|gb|EDK89047.1| serine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 421

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +   ++   +G+   + ++M
Sbjct: 158 SGSRFVLYRGAAARLERALINFMLDVHTLEEGYTEHITPFMVKPEVCEGTGQLPKFEEDM 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 218 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGKDVKGL 273

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 274 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 332

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 333 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 376


>gi|294784673|ref|ZP_06749961.1| serine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294486387|gb|EFG33749.1| serine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 424

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +   ++   +G+   + ++M
Sbjct: 161 SGSRFVLYRGAAARLERALINFMLDVHTLEEGYTEHITPFMVKPEVCEGTGQLPKFEEDM 220

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 221 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGKDVKGL 276

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 277 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELPYRVIQLCSGDLGFSAAKT 335

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 336 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 379


>gi|304385081|ref|ZP_07367427.1| histidine--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|304329275|gb|EFL96495.1| histidine--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 424

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 126/434 (29%), Gaps = 48/434 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M +Q  KG    LP   K    V    RE        E+  P  +  +++  S     D 
Sbjct: 1   MKYQKPKGTADILPPYSKEWQFVEQKARETFALYNYEEIRTPMFEKFEVFSRSAGDTSDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+  + +   P     +   F            P   Y +   FR E RP+
Sbjct: 61  VTKEMYDFDDKGGRHIALRPEGTAGVVRAFVENKLYGPEHQKPVKVYYMGPMFRYE-RPQ 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP------------ 194
            G  R REF      +F             M + +L      GLK +             
Sbjct: 120 SG--RLREFHQIGVEAFGSDSPKIDVDTITMAMDFLSQLKVAGLKLVINTLGDQASRQQY 177

Query: 195 ---MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +     P   +LS +          +V  SKD  D  I  +     D ++ ++    
Sbjct: 178 RQALIDYLEPYYDELSDDSKERLHKNPLRVLDSKDATDQEIVKDAPSILDYLTEDAQKHF 237

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKD 309
                            +          RG++     IF         M A      G  
Sbjct: 238 AQVKEQL-------DALEIPYVVDSSMVRGLDYYNHTIF-------EIMVADSALGKGDV 283

Query: 310 HYVQMGSYGIGAMRV---------VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                G Y      +             +E            ++   ++    +   + V
Sbjct: 284 TICAGGRYNGLVQELGGPEVSGVGFGLGVERLLLLLNEQTQAALQASRLDFYVVGIGEAV 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + I   L K+      D +  +  +QF  AD L     + VG   +     ++K 
Sbjct: 344 QTETLK-IVHELRKMNFVTEQDYLERKPKAQFKSADKLNARYVITVGEAEMQAHVFKLKE 402

Query: 421 RLTGIREDMSLEEV 434
             TG  + +SL+E+
Sbjct: 403 MATGTEKTLSLDEL 416


>gi|254469216|ref|ZP_05082621.1| seryl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211961051|gb|EEA96246.1| seryl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 426

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 70/213 (32%), Gaps = 23/213 (10%)

Query: 7   FLPILQENP------RDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNA 55
            L    E P      ++      KL    GM  + +    G    +   Q A     +  
Sbjct: 124 LLHTHGEKPELDFEPKEHYELGEKL---GGMDFETAAKMSGSRFVILKSQIARLERALGQ 180

Query: 56  IIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            + +      G  E+S P L   +    + +   + ++  R     +      PT E  +
Sbjct: 181 FMIDLHTREHGYTEVSPPLLVRDNALYGTSQLPKFAEDQFR---DQETGHWLIPTAEVPL 237

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGS 170
           T++      +  +LP     +   FR E     R   G++R  +F   +  S       S
Sbjct: 238 TNMVAGETLAEADLPIRVTALTYCFRSEAGSAGRDTAGMLRQHQFQKCELVSV-TDENSS 296

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                +M  S  ++   LGL    +   SG +G
Sbjct: 297 LDELERMRESAEKVLKLLGLHYRVVTLCSGDMG 329


>gi|238503390|ref|XP_002382928.1| seryl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|317138770|ref|XP_001817126.2| seryl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40]
 gi|220690399|gb|EED46748.1| seryl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 474

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 88/281 (31%), Gaps = 17/281 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-- 102
            G      +     E     G      P     D+  ++ + + + +E+ ++ +  DK  
Sbjct: 175 YGLFLNLALINYGLEFLWGKGYKPNQPPQFMLKDMMAKTAQLEQFDEELYKVTESEDKST 234

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E+ ++ +        ++LP  +      +R E     +  +G+ R  +F   
Sbjct: 235 DKYLIATSEQPLSALHDGEWLQDKDLPIKYAGYSTCYRKEAGAHGKDAWGIFRVHQFEKI 294

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---D 215
           +       PE S  ++ +M  +    +  LGL    +   SG +    S ++ + A    
Sbjct: 295 E-QFVLTKPEQSWEAFEEMMATSEEFYKSLGLPYQIVTIVSGALNNAASKKYDLEAWFPF 353

Query: 216 TGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            GE  ++    +  D+   +    +    + +       A  A                 
Sbjct: 354 QGEYKELVSCSNCTDYQARALEIRYGTKKATDVKKSYVHALNATLCATERTLCCILENYQ 413

Query: 275 KRVSARGIE------VGHIFYFGTKYSLPMSATFKGADGKD 309
           K       E       G   +      LP  +T + A GK 
Sbjct: 414 KEDGFIVPEPLRKYIPGAPEFLPYTKELPKDSTSQKAKGKQ 454


>gi|121606224|ref|YP_983553.1| seryl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|166222759|sp|A1VSK4|SYS_POLNA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|120595193|gb|ABM38632.1| seryl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 444

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 86/257 (33%), Gaps = 25/257 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK---GIYSWLPLG--QKALDNVNAIIREEQN-RTGAI 67
            PRD       L    G+  +      G    +  G   +    ++  + + Q    G  
Sbjct: 145 EPRDHVDVGQPL----GLDFELGTKLTGSRFTVMKGPLARLHRALSQFMLDVQTAEHGYT 200

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEML------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
           E  VP + ++D    +G+   + +++       +     + A+   PT E  +T+  R  
Sbjct: 201 ECYVPYIVNSDSLRGTGQLPKFEEDLFAARKGGQEGQAENAALYLIPTSEVPLTNFVRDE 260

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +     LP  F      FR E     R   G++R  +F   +     + PE S  +   M
Sbjct: 261 VVPEAQLPLKFTAHTPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQV-VHPEKSYEALEAM 319

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                 I  +LGL    M   +G +G   +     E  + A +   ++    +   F   
Sbjct: 320 TGHAEVILQKLGLPYRVMLLCTGDMGFGATKTYDLEVWLPAQSTYREISSVSNCEAFQAR 379

Query: 234 SENTDFDDIISLNSIVE 250
                F +    N  V 
Sbjct: 380 RLQARFKNAQGKNEFVH 396


>gi|312961665|ref|ZP_07776163.1| Seryl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283924|gb|EFQ62507.1| Seryl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 426

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 17/241 (7%)

Query: 17  DAEIASHKLM--LRTGMIHQHS---KGIYSWLPLG--QKALDNVNAIIREEQN-RTGAIE 68
           D EI  H  +  L  G+  + +    G    L  G   +    +   +        G  E
Sbjct: 133 DFEIKDHVALGELTGGLDFETAAKMSGARFALLRGPIARMHRALAQFMINLHTAEHGYEE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P L  A   V + +   + +++ +++   +  +   PT E  +T+I    I   + L
Sbjct: 193 AYTPYLVQAPALVGTSQLPKFEEDLFKISRDGEADLYLIPTAEVSLTNIVAGEILDAKQL 252

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     R   G++R  +F   +     + P  S  +   +  +  R+
Sbjct: 253 PIKFVAHSPCFRSEAGASGRDTRGMIRQHQFDKVEMVQV-VEPSTSMQALEGLTANAERV 311

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              L L    +   +G +G         E  V +     ++    +  DF        F 
Sbjct: 312 LQLLELPYRVLSLCTGDMGFSAVKTYDLEVWVPSQDKYREISSCSNCGDFQARRMQARFR 371

Query: 241 D 241
           +
Sbjct: 372 N 372


>gi|264679951|ref|YP_003279860.1| seryl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|299531457|ref|ZP_07044865.1| seryl-tRNA synthetase [Comamonas testosteroni S44]
 gi|262210466|gb|ACY34564.1| seryl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|298720620|gb|EFI61569.1| seryl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 438

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 24/257 (9%)

Query: 17  DAEIASH-KLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEM 69
           D EI  H  L    G+  +      G    +  GQ A     +   + + Q  + G  E 
Sbjct: 138 DFEIKDHVDLGAPIGLDFEAGVKLSGARFTVMQGQIARLHRALAQFMLDLQTEQHGYTEC 197

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM--------IYGPTHEEVMTDIFRSH 121
            VP + ++D    +G+   +  ++         A            PT E  +T++ R  
Sbjct: 198 YVPYIVNSDSLKGTGQLPKFEGDLFAAQKGGQDAEPLPDTAALYLIPTAEVPLTNLVRDE 257

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           + +   LP         FR E     R   G++R  +F   +     + PE S  +  +M
Sbjct: 258 VLAEDRLPIKLTAHSPCFRSEAGSGGRDTRGLIRQHQFDKVEMVQI-VHPEKSYEALEEM 316

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIP 233
                 +  +LGL    M   +G +G   +     E  V A     ++    +   F   
Sbjct: 317 TGHAEAVLQKLGLPYRVMSLCTGDMGFGSAKTYDLEVWVPAQGTYREISSVSNCEAFQAR 376

Query: 234 SENTDFDDIISLNSIVE 250
                F +    N +V 
Sbjct: 377 RMQARFKNAQGKNELVH 393


>gi|302560754|ref|ZP_07313096.1| glycyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302478372|gb|EFL41465.1| glycyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 460

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 140/444 (31%), Gaps = 60/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +    + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR-EFL 156
             + +        E       R+      +L       +  F  E +   G++ +     
Sbjct: 93  SCHKRFRA-DHLEEAYEEKKGRAPENGLADLSCPNCGNKGTF-TEPKQFSGLLSTHLGPT 150

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLA 214
                   L PE ++  +            +   G+           +G    +E     
Sbjct: 151 QDSGSVAYLRPETAQGIFTNFAQVQTASRKKPPFGIAQ---------MGKSFRNEITPGN 201

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               T+ F   +   F  P E     D       +EQ    Y           +   P+ 
Sbjct: 202 FIFRTREFEQMEMEFFVKPGE-----DEQWQEYWMEQRWNWYTGLGLREENMRWYEHPKE 256

Query: 275 K--RVSARGIEVGHIFYFG-------------TKYSLPMSATFKGAD--------GKDHY 311
           K    S R  ++ + F FG             T Y L   +   G D        G+   
Sbjct: 257 KLSHYSKRTADIEYRFQFGGSEWGELEGVANRTDYDLGAHSKASGQDLAYFDQEAGERWT 316

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHD 358
             +     G  R + A +  ++                 +     +AP K +++ +  + 
Sbjct: 317 PYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGKMEKRTVLRLDHRLAPVKAAVLPLSRNA 376

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      + +   L     ++ +DD G  IG ++   D +G P  V V    + D+ V +
Sbjct: 377 E-LSPKAKGLAQALRTHW-NIEFDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLDDNAVTV 433

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R +  +E +SL+++  Y + R 
Sbjct: 434 RERDSMKQERVSLDQIEGYLASRL 457


>gi|238749782|ref|ZP_04611287.1| Seryl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238712437|gb|EEQ04650.1| Seryl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 430

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 17  DAEIASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIE 68
           D EI  H  +     G+    +    G    +  GQ A     +   + +    + G +E
Sbjct: 133 DFEIKDHVSLGEMAGGLDFAAAVKLTGARFVVMKGQIARMHRALAQFMLDLHTEKHGYLE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKS 124
             VP L +      + +   +G ++       +++        PT E  +T++ R  I  
Sbjct: 193 TYVPYLVNHATLYGTAQLPKFGGDLFHTKPLEEESDSSNYALIPTAEVPVTNLVRDEILE 252

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +LP         FR E     R   G++R  +F   +       PE S  +  ++   
Sbjct: 253 EDSLPLKMTAHTPCFRAEAGTYGRDTRGLIRMHQFDKVEMVQI-TRPEDSMAALEELTGH 311

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
             ++   LGL    +   +G +G   S     E  + A     ++    +  DF
Sbjct: 312 AEKVLQLLGLPYRKVLLCTGDMGFGSSKTYDLEVWLPAQDTYREISSCSNMWDF 365


>gi|325283190|ref|YP_004255731.1| Histidyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314999|gb|ADY26114.1| Histidyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 430

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 125/418 (29%), Gaps = 54/418 (12%)

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDK-AMIYGPTHE 111
            I  +   R GA  ++ P  + ADL      G  D   KEM  +    +    +  P   
Sbjct: 33  RIAAQVLERAGAQFIATPMFEEADLVQRGVGGSTDIVRKEMFTVYYAGEHGGYVLRPEGT 92

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
             +   +  +       P   +     FR E        R R+F   D      +   + 
Sbjct: 93  APIVRAYLENGLKQLGAPLKLWTHGPMFRAE---NVQKGRLRQFHQVDYECLGSSDALAD 149

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------------------DLSHEFI 211
                       I   LGLK + ++   G IG                      LS +  
Sbjct: 150 AE---AIALMWDIVTALGLKGVSIQL--GSIGDPQDRAAYNEYLRGLFTPHLEGLSEDSK 204

Query: 212 VLADTGETQVFCSKDFMDFPIPS-----ENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   ++  SK   D  I +        DF    +     +              + 
Sbjct: 205 DRLTRNPMRILDSKSESDQAIIAELSVRPMLDFLGAEAAAHFEQVRQHLTDWGVPFETDP 264

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMR 323
                 +  R +    E+ H    G K +L     + G     G    V    +  G  R
Sbjct: 265 SIVRGLDYYRRT--AWELHHQG-IGAKSALGGGGRYDGLAQELGAKDEVPGIGWAFGIER 321

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-VGCDVFWD 382
           ++ A+     + +G+ +P +V P     + + A D         +  +  +  G D  + 
Sbjct: 322 ILLAM-----EDEGLSFPAAVGPA----LYLAALDDEHVALVAALARQARQVAGADFSFR 372

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             G   G  F  AD  G     ++GS   +  ++ +K+  +G +  +  + +  +   
Sbjct: 373 RRG--AGQAFKEADRRGARWAAVIGSNEAAQQRLTLKNLSSGEQVAVPFDGLNIFLKE 428


>gi|255321136|ref|ZP_05362302.1| histidyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262380175|ref|ZP_06073330.1| histidyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255301690|gb|EET80941.1| histidyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298369|gb|EEY86283.1| histidyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 431

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/438 (15%), Positives = 137/438 (31%), Gaps = 43/438 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           KG    LP    A   +   +    +  G  ++ +P ++  +L+  S     D   KEM 
Sbjct: 8   KGFNDILPAQTPAWRRLEQHLLSLMDAYGYQQIRLPIVEQTNLFKRSIGDATDIVEKEMY 67

Query: 95  RLADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+ +  +++   P            H       P  +Y I   FR E +P+ G  R 
Sbjct: 68  TFLDKGNPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWY-IGPMFRYE-KPQKG--RY 123

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-------RAESGP---- 201
           R+F      +F +           M     R++ R+G+             A+       
Sbjct: 124 RQFHQFGVETFGVATPDMDAELILM---TARLWKRMGVAEKVQLELNTLGEADERAAYRA 180

Query: 202 --IGGDLSHEFIVLAD------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             +G   SH+  +  D      T   ++  SKD     I        D +   ++     
Sbjct: 181 ALVGFLESHKADLDEDSQRRLTTNPLRILDSKDAKTQSILENAPKLHDFMGEETLAHFNL 240

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGKD 309
                T    +  +   L        + +      + G++ ++     +        GK 
Sbjct: 241 LQQYLTDAGISFVINQKLVRGLDYYNKTVFEWTTTHLGSQGTVCAGGRYDSLVGQLKGKA 300

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                       M  +  ++E   D        +V   +I L+   A+        E+  
Sbjct: 301 DQSVPAVGFAMGMERLLLLLEQVEDN------TAVRDCEIFLLAEPAYQGKALVMAEQFR 354

Query: 370 ARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +         +     G  + SQ   AD  G    VI+G +   + K+ +K      + 
Sbjct: 355 NQFEAANSPFRLKTGSQG-SMKSQMKKADQSGAIFAVILGQREWENRKLTVKRLENAEQV 413

Query: 428 DMSLEEVINYASHRFSNN 445
           ++ ++ +  Y   + ++ 
Sbjct: 414 EVEIDNLTPYLIEQLASE 431


>gi|50121568|ref|YP_050735.1| seryl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|67461745|sp|Q6D3V0|SYS_ERWCT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|49612094|emb|CAG75544.1| seryl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 431

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 74/209 (35%), Gaps = 16/209 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   + +    + G  E  VP L +      +G+   +G+++
Sbjct: 159 TGARFVVMKGQIARLHRALAQFMLDLHTQQHGYQEAYVPYLVNHATLYGTGQLPKFGEDL 218

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                 +++A        PT E  +T++ R  I    +LP         FR E     R 
Sbjct: 219 FHTNPLSEEAESSQYALIPTAEVPLTNLVRDEILDEESLPLKMTAHTPCFRSEAGSYGRD 278

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G++R  +F   +     + PE S  +  ++      +   L L    +   +G +G  
Sbjct: 279 TRGLIRMHQFDKVELVQI-VRPEDSMQALEELTTHAETVLQLLKLPYRKVLLCTGDMGFG 337

Query: 206 LSH----EFIVLADTGETQVFCSKDFMDF 230
            +     E  + A     ++    +  DF
Sbjct: 338 STKTYDLEVWLPAQDTYREISSCSNMWDF 366


>gi|169612057|ref|XP_001799446.1| hypothetical protein SNOG_09144 [Phaeosphaeria nodorum SN15]
 gi|160702428|gb|EAT83336.2| hypothetical protein SNOG_09144 [Phaeosphaeria nodorum SN15]
          Length = 629

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 131/383 (34%), Gaps = 74/383 (19%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS--YNKMFVSYLR 183
           + +PF    I   FR+E+ PR G++R REFLM +   F + PEG K    ++++    L 
Sbjct: 239 QQMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHF-VDPEGGKKHPRFDEVKDVELE 297

Query: 184 IFHR----------------------------LGLKSIPMRAESGPIGGDL--------- 206
           + +R                            LG     ++     IG D          
Sbjct: 298 LLNREVQLSGKTTVETTKIGKAVETGLVDNETLGYFLARIQQFLLKIGIDAKKIRFRQHM 357

Query: 207 -SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +      AD  + ++  S  +++    ++ + +D  + +                +  E
Sbjct: 358 ANEMAHYAADCWDAELLTSYGWIECVGCADRSAYDLTVHMKKTGAPLVVREPRKEPLKVE 417

Query: 266 K-----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-----------DGKD 309
           +              +   + +E   I          +S   +             DGK 
Sbjct: 418 EWQCDLDKKKFGPKFKKDGKTVEAA-IEALSQDLREKLSLDLEKEGKIVIDVPGVGDGKV 476

Query: 310 HYVQMGSYGIGAMRVVAAVIESSH------DGKGII-WPDSVAPFKISLINIKAHDQVCR 362
              +         RV  A+ E  +      + +GI+ +P +VAP K+ ++ + +H    +
Sbjct: 477 EVPKELISIEKRTRVENALCEHIYWTREQDEARGILSFPPTVAPTKVLIVPLSSHTD-FK 535

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                +  +L ++G             ++F   D LG PL + +  + V D+   ++ R 
Sbjct: 536 PFVRTLSDKLQELGIS--------TPTNEFQRNDELGTPLGITIDFQSVKDNTFTLRDRD 587

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +  +    L+E+    S   +  
Sbjct: 588 STEQVRAGLDEITGAISSLVNGR 610



 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           G+Y + P G    +N+  + R+    +   +E+    L   ++   SG  D +   M
Sbjct: 39 SGLYDFGPPGCALTNNIVDVWRKHFVLKENMLEVDCTMLTPHEVLKTSGHVDKFADWM 96


>gi|49479017|ref|YP_037440.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|81395406|sp|Q6HG86|SYH1_BACHK RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|49330573|gb|AAT61219.1| histidine--tRNA ligase (histidyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 425

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 144/450 (32%), Gaps = 79/450 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMSMAF-ELFQTLNLEVTIQYNNRKLLNGILQAIHIPTEL 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +     +        +N  
Sbjct: 179 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFEEAFNNPL 237

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 238 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGR 297

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  +     +   + +I + 
Sbjct: 298 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETV----SSTADVFIIPLG 346

Query: 356 AHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGS 408
              Q     C +I  +L     +  ++         G +       A+    P  +I+G 
Sbjct: 347 TELQ-----CLQIAQQLRSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGE 395

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + +    V +++   G    + L  + NY 
Sbjct: 396 EEICTETVMLRNMKEGSEVKVPLSSLSNYL 425


>gi|329769632|ref|ZP_08261036.1| glycyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328838387|gb|EGF87996.1| glycyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 457

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 145/447 (32%), Gaps = 65/447 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +      +   W  SG   ++   ML   
Sbjct: 28  WDYGPLGIELKNNIKKAWWKKFIQESPYNVGLDAAIFMNPRTWEASGHVGNFSDPMLDCK 87

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG- 148
                   D+  +   +   +E+++ D           LPF   +  ++  +   P  G 
Sbjct: 88  VCKSRLRADKLIEEYYFNEKNEDIIVD----------GLPFEELEAIIERENIKCPECGG 137

Query: 149 --VMRSREFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMR----AES 199
                 R+F       F       ++S + ++    +   IF         MR       
Sbjct: 138 HDFTNIRQFN----LMFKTNQGVVENSTSVVYLRPETAQGIFVNFKNVQRSMRKKLPFGI 193

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IG    +E         T+ F   +   F  P    ++  I   N             
Sbjct: 194 GQIGKSFRNEITPGNFIFRTREFEQMELEFFCEPGTELEWHKIWKDNCENWLLNLGMTKE 253

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD----- 306
           +    +   + L      +   IE    F +G        T Y L       G D     
Sbjct: 254 NIRLRDHEKEELSHYSNATTD-IEFRFPFGWGELWGIASRTDYDLKQHMQHSGQDLTYQN 312

Query: 307 ---GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINI 354
               +          +G  RV+ A +  +++ +          + +  ++AP+K +++ +
Sbjct: 313 LQTNEKFIPYCIEPSVGVDRVLLAFLCDAYNEEEVGEGDTRTVLKFHPAIAPYKAAILPL 372

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +   K+Y  L      V +D+ G  IG ++   D +G P  +    +  +D 
Sbjct: 373 SKK---LSEQATKVYQEL-AQDFMVDFDETG-SIGKRYRRQDEVGTPFCITYDFESENDG 427

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++ R +  +  M + E+  Y + +
Sbjct: 428 MVTVRDRDSMEQVRMPISELKQYLTEK 454


>gi|319740177|gb|ADV60382.1| glu- + pro-tRNA synthetase [Prismosticta fenestrata]
          Length = 134

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R ++     + G  +S      +   D ++  YV   S+GI   R +  ++    D K
Sbjct: 15  SGRAVQGATSHHLGQNFSKMFEIVYDDPDTQEKVYVYQNSWGIT-TRTIGVMVLVHGDDK 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  VA  +  ++             +   D+C+ +   L + G     D       
Sbjct: 74  GLVLPPRVADIQAIVVPCGVTASSSAEERKSLIDSCKALVDDLIEAGVKAEGDYRDNYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|223996551|ref|XP_002287949.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977065|gb|EED95392.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 398

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 76/192 (39%), Gaps = 13/192 (6%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR----NDKAMIY 106
             +++   +  +  G  E+S P + S      + +   + +++ ++       N +    
Sbjct: 138 RAISSYFLDRASEKGYTEVSPPLVVSRSALEGTSQLPKFEEDLFKIVPESHTCNGQDAFL 197

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  +T++  + I    +LP ++  +   FR E     R   G++R+ +F   +   
Sbjct: 198 IPTAEVPLTNMHANQILEESDLPISYCAMTPCFRAEAGSYGRDTRGLIRTHQFYKVELVK 257

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---DTGE- 218
              T E S + + K+          L +    MR  SG +G    H + + A    TGE 
Sbjct: 258 I-TTAETSANEHEKLTRHAEECLEELKIPFRKMRLCSGDVGFSAQHCYDLEAWLPSTGEY 316

Query: 219 TQVFCSKDFMDF 230
            ++    +  DF
Sbjct: 317 REISSCSNTGDF 328


>gi|296270027|ref|YP_003652659.1| histidyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296092814|gb|ADG88766.1| histidyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 418

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 135/432 (31%), Gaps = 33/432 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDS 88
           MI Q  KG + W+P   +++  +   +     R G   +  P  +   L+        D 
Sbjct: 1   MIFQAPKGTFDWMPPRSESVLAIRDALAAPVRRAGYSYIETPIFEDTRLFQRGVGESTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM     +  +++   P     +      H      LP   +     FR E RP+ G
Sbjct: 61  VTKEMYTFQSKGGQSLTLRPEGTASVMRAVLEHGLYGGPLPIKLWYSGSYFRYE-RPQAG 119

Query: 149 VMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGD 205
             R R F    A +     P             Y  +  R     +      E  P    
Sbjct: 120 --RYRHFSQVGAEALGAQDPAIDAELIVLALDGYASLGLRRVRLLLNSLGCRECRPGYRA 177

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF+   D  E      +      +  +  +    ++   +V                
Sbjct: 178 ALQEFLRGLDLDEATRHRVEINPLRVLDDKREEVRAQLTDAPLVIDHLCGACKAFHEEVR 237

Query: 266 KLFDSLP---ENKRVSARGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQ 313
            L  +      ++    RG++      F       G + S+     + G         + 
Sbjct: 238 GLLSAAGVSYIDEPKLVRGLDYYTRTTFEFVHDGLGAQSSVGGGGRYDGLSEMIGGPPLP 297

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              + +G  R V A+     + +G++   S  P ++ +  +   D+  R     +   L 
Sbjct: 298 GVGWALGVDRTVLAM-----EAEGLL---SERPTRVDVFAVPLGDE-ARRRIFPLVTGLR 348

Query: 374 KVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + G  V         + G+    AD  G    VI+G + +     +IK   TG +  + L
Sbjct: 349 RAGLAVDMAFGGRSVK-GAM-KAADRSGARYAVILGERDLEAGAAQIKDMTTGEQTAVPL 406

Query: 432 EEVINYASHRFS 443
            EV++    R S
Sbjct: 407 AEVVDVLKGRLS 418


>gi|284040464|ref|YP_003390394.1| seryl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283819757|gb|ADB41595.1| seryl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 423

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +     G   +   G +    +     +E  + G +E+  P L + D    +G+      
Sbjct: 160 VKIAGAGFPVYKGKGARIQRAMINFFLDEALKAGYVEVQPPILVNEDSGFGTGQLPDKEG 219

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRF 147
           +M    +     +   PT E  +T+I+R  I +   LP         FR E         
Sbjct: 220 QMYFATEDK---LYLIPTAEVPITNIYRDVILNENQLPVKNVGYTPCFRREAGSWGAHVR 276

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           G+ R  +F   +       PE S  +  +M +    +  +L L    +R   G +G
Sbjct: 277 GLNRLHQFDKVEIVRI-ERPENSYAALEEMSLHVQSLLQKLELPYRVLRLCGGDMG 331


>gi|84503428|ref|ZP_01001488.1| seryl-tRNA synthetase [Oceanicola batsensis HTCC2597]
 gi|84388215|gb|EAQ01167.1| seryl-tRNA synthetase [Oceanicola batsensis HTCC2597]
          Length = 429

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E   P L   ++   +G+   +G++  R      +   
Sbjct: 172 ARIHRALAQFMLDTHVSENGLTETWTPVLVKEEMMYGTGQLPKFGEDSYRT----REGWW 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I    + +   LP  +      FR E     R   G++R  +F   +  
Sbjct: 228 LVPTAEVTLTNIVNDVMIADSYLPRRYVAHTQCFRSEAGSAGRDTAGMLRQHQFEKVEMV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           S    PE S+   ++M      I  RLGL    +   +G +G
Sbjct: 288 SI-TRPEESRAELDRMTDCAEGILRRLGLAFRTVVLCTGDMG 328


>gi|319941978|ref|ZP_08016299.1| seryl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804631|gb|EFW01501.1| seryl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 432

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 14/217 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD----RND 101
                 +   + +      G  E   P + +A     +G+   + +++          + 
Sbjct: 169 AHLHRALAQFMLDVHTREQGYTECYTPYIVTASTMTGTGQLPKFEEDLFAAKKGGAYSDL 228

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           + M   PT E  +T+     I    +LP         FR E     R   G++R  +F  
Sbjct: 229 EQMYLVPTAEVTLTNSVSGQILKAADLPIFLTAHTPCFRSEAGAYGRDTRGMIRQHQFDK 288

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFIVL 213
            +     + PE S      +      I  +L L    M   +G IG         E  + 
Sbjct: 289 VEMVKI-VRPEESYDQLESLTHDAEVILQKLNLPYRVMALSTGDIGFGSCKTYDLEVWIP 347

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           A     ++    +  DF     +  F D       V 
Sbjct: 348 AQNCYREISSCSNCEDFQARRMSARFKDENGRTRYVH 384


>gi|158333833|ref|YP_001515005.1| histidyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|189082282|sp|B0CDA0|SYH_ACAM1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|158304074|gb|ABW25691.1| histidyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 430

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 127/428 (29%), Gaps = 26/428 (6%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-Y 86
            G I Q S+G    LP        V A  R+  ++    E+  P  +  +L+    G   
Sbjct: 1   MGFI-QVSRGTRDILPDEVIYWQYVEATARQLLHQAAYRELRTPIFEQTNLFERGIGEAT 59

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  GKEM    DR D+++   P         F  +    +      + I   FR E   R
Sbjct: 60  DVVGKEMYTFQDRGDRSITLRPEGTAGAVRSFIENKLHAQGGVQRLWYIGPMFRYE---R 116

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G  R R+F      +       +      +     ++   LG+    +   S  +G   
Sbjct: 117 PGAGRQRQFHQIGVEALGSQDPRADAE---VIAIASQLLKSLGVPDWTLSLNS--LGTAE 171

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA---TSDVH 263
             +    A       +      D     +      + S +   ++               
Sbjct: 172 DRQKYREALVTYLSQYKDDLDPDSQDRLQRNPLRILDSKDPKTKEIAQSAPNILDYLGTD 231

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGA 321
           +++ FD + +         ++      G  Y          +G   +      G Y    
Sbjct: 232 SKQHFDRVQQLLTDLDIAYKLNPCLVRGLDYYTHTAFEFELEGLGNQATVCGGGRYDRLV 291

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--------VCRDACEKIYARLS 373
             +     E+   G  I     +   + + I +                     I   L 
Sbjct: 292 SEL--GGPETPAVGWAIGMERLILLLQNAEITLNQSLDFYCVARGPEAEAQALLICQNLR 349

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V  D  G   G Q   A+  G    +I+G     D  V++K   +G +E ++  +
Sbjct: 350 ENGFSVEMDLSGSAFGKQLKRANRSGALACLILGDTEACDRTVQLKWLASGEQESIAQAD 409

Query: 434 VINYASHR 441
           + N  S  
Sbjct: 410 LRNLTSQL 417


>gi|126136162|ref|XP_001384605.1| Seryl-tRNA synthetase, cytoplasmic (Serine--tRNA ligase) (SerRS)
           [Scheffersomyces stipitis CBS 6054]
 gi|126091803|gb|ABN66576.1| Seryl-tRNA synthetase, cytoplasmic (Serine--tRNA ligase) (SerRS)
           [Scheffersomyces stipitis CBS 6054]
          Length = 460

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 70/203 (34%), Gaps = 12/203 (5%)

Query: 23  HKLMLRT-GM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           H+++LR  G      +       Y     G      +         +     +  P + +
Sbjct: 154 HEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLNFLAKNDYTPLQAPVMMN 213

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQI 135
            ++  ++ +   + +E+ ++ D  D+  +   + + +         +S +  LP  +   
Sbjct: 214 KEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPQEQLPVRYAGY 273

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     +  +G+ R   F   +       PE S   +++M       +  LGL 
Sbjct: 274 SSCFRREAGSHGKDAWGIFRVHAFEKIE-QFVLTEPEKSWQEFDRMIGLSEEFYKSLGLP 332

Query: 192 SIPMRAESGPIGGDLSHEFIVLA 214
              +   SG +    + ++ + A
Sbjct: 333 YRVVGIVSGELNNAAAKKYDLEA 355


>gi|74316613|ref|YP_314353.1| histidyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|123745548|sp|Q3SL69|SYH_THIDA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|74056108|gb|AAZ96548.1| Histidyl-tRNA synthetase, class IIa [Thiobacillus denitrificans
           ATCC 25259]
          Length = 419

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 132/427 (30%), Gaps = 34/427 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP    A     AI+R+   R G  EM  P L+   L+  + G   D   K
Sbjct: 6   QSVRGMNDCLPDAADAWQGFEAIVRDWLRRYGYREMRTPILEHTGLFKRAIGEVTDIVEK 65

Query: 92  EMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D  N +++   P            H   Y +     +     FR E RP+ G  
Sbjct: 66  EMYTFVDELNGESLTLRPEGTASSVRAVIQHNLLY-DGGKRLWYSGPMFRHE-RPQKG-- 121

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMRAESGPI 202
           R R+F      +              M     R          + LG      R  S  I
Sbjct: 122 RYRQFHQVGVEALGFAGPDVDAELIVMCADLWRELGIAPTLQLNTLGDHGARQRHRSKLI 181

Query: 203 GGDLSHEFIVLAD------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
               +H  ++ AD      +   ++  SK+     + +E     D +   ++        
Sbjct: 182 AYYEAHRDVLDADAQRRLHSNPLRILDSKNPAMQALNAEAPRLLDELEDEALNHFDALQG 241

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQM 314
              ++    ++   L        R +        G + ++     + G            
Sbjct: 242 LLRANGIAFEINPRLVRGLDYYNRTVFEWVTDQLGAQGTVCAGGRYDGLVEQLGGKPAPA 301

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             + +G  R++ A++E+S        PD+          I            +  A L  
Sbjct: 302 AGFAMGIERLL-ALVETSGKPIVPAVPDAY---------IVHAGDTADAFAWQAAATLRG 351

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEE 433
            G  V     G    SQ   AD       VI+G +  +  +V +K  R T  +  + L  
Sbjct: 352 AGLAVVLHCGGGSFKSQMKKADASRARYAVIIGDEEAAAQQVSVKPLRGTAEQTRVELAL 411

Query: 434 VINYASH 440
            I Y   
Sbjct: 412 AIEYLKK 418


>gi|317013250|gb|ADU83858.1| seryl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 415

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 81/247 (32%), Gaps = 12/247 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +  ++ +   + G   +  P L +  +   +G+   + +++ ++ + N   +
Sbjct: 170 FGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENEN---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++   I S  NLP         FR E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVTLTNLYNDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            +     E        M  S   I   L L    ++  SG +G   S+    E  +    
Sbjct: 287 VAITHPKESDAMQ-ECMLESASEILRALELPHRFVQLCSGDLGFSASNTIDIEVWLPGQN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              ++    +  DF        F +      +     +  A    +          +   
Sbjct: 346 CYREISSVSNTRDFQARRAKIRFKENQKNQLVHTLNGSSLAVGRTMVALMENHQQEDGSI 405

Query: 277 VSARGIE 283
              + +E
Sbjct: 406 HIPKALE 412


>gi|304311216|ref|YP_003810814.1| Seryl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301796949|emb|CBL45162.1| Seryl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 427

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 14/228 (6%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMS 70
            PRD       L      +     G    +  G  A     +   + +    + G  E+ 
Sbjct: 135 EPRDHVDIGEALGELDFEVAAKITGARFVVMNGALARMHRALIQFMLDTHTSQNGYQEVY 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           VP + + D    +G+   +G+E+ RL    +KA    PT E  +T++ R  I +   LP 
Sbjct: 195 VPYVVNEDSLKGTGQLPKFGQELYRL--EGEKAFYLIPTAEVPVTNLMRDEIVAEDELPK 252

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            F      FR E     +   G++R  +F   +     + PE S  +   +      I  
Sbjct: 253 KFACHTPCFRSEAGAYGKDVRGMIRQHQFEKIELVQI-VRPEDSYAALEALTGHAESILQ 311

Query: 187 RLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
           +L L    +    G IG   +     E  +       ++    +F DF
Sbjct: 312 KLNLPYRVITLCGGDIGFSSAKTYDIEVWLPGQQKYREISSCSNFEDF 359


>gi|85000409|ref|XP_954923.1| seryl-tRNA synthetase [Theileria annulata strain Ankara]
 gi|65303069|emb|CAI75447.1| seryl-tRNA synthetase, putative [Theileria annulata]
          Length = 532

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 88/278 (31%), Gaps = 53/278 (19%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E  +  EIA H    R   +    KG    L         +  ++R+     G + +  P
Sbjct: 225 EINKAVEIAGH----RAFFLK--GKGC---LLNMALIQYGLQFLVRK-----GYLPVHTP 270

Query: 73  TLQSADLWVESGRYDSYG-----------------------------KEM-LRLADRNDK 102
                ++  E    D +                              ++M L+  D +  
Sbjct: 271 YFMRKEVMSECAELDDFETTLYCIPLTDSTAPNATADATKTTSTNGTRDMELKEKDVDKN 330

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
            +    T E+ +  + R+ +   + LP  +  I   FR E     +   G+ R  +F   
Sbjct: 331 KLFLIATSEQPIAALHRNEVYQKKQLPIRYAGISTCFRREAGAHGKDLRGIFRVHQFQKV 390

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA--DT 216
           +      TPE S   + +M       +  L L    +   +G +    S ++ + A    
Sbjct: 391 E-QFVVCTPENSIQEHEQMVKFSEEFYRSLKLPYRIVSIVAGALNKAASKKYDLEAWFPG 449

Query: 217 GET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            E   ++    +  D+   + N+ F D  + +      
Sbjct: 450 YEDYRELVSCSNCTDYQAQNLNSKFYDKNNQDRKHVHM 487


>gi|328948006|ref|YP_004365343.1| histidyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328448330|gb|AEB14046.1| Histidyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 433

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 141/442 (31%), Gaps = 57/442 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
           KG   +LP  +    ++   + +     G + +  P L+  + L  +S       K+M R
Sbjct: 11  KGFRDFLPQDEILRSDLIEKLTKTFRSYGFVPIDTPVLEYTEILLRKSN--GETEKQMFR 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D   + +        V    F +  K     PF  Y I   +R E +P+ G  R REF
Sbjct: 69  FEDNGGRDVAMR-FDLTVPFARFTAQHKEELYFPFKRYHISKVWRGE-KPQVG--RYREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVS-------------------YLRIFHRLGLKSIPMR 196
           +  D  +       S      +  +                   + R   +LGL      
Sbjct: 125 VQCDFDTVGSDSAVSDFETLSLMKAALSAIGVDEIKIHVNHRGIFNRFLKKLGLSEKSED 184

Query: 197 AESGPIGGDLSHEFIVLAD----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                       E  V A+    TG             P+ S       I  L    ++ 
Sbjct: 185 ILRAVDKIAKVGEEKVSAELEEITGNADSSAKIIDYIKPLSSFEETLSHIEELAGGEDED 244

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH-------IFYFGTKYSLPMSATFKGA 305
           +        +      +          RG++          +    +  S+     +   
Sbjct: 245 SKRMKTIFSMMKAAGIEGTYMLDPAITRGLDYYTGIVYETFLEKLPSIGSVCSGGRYDNL 304

Query: 306 DG---KDHYVQMGSYGIGAMRVVAAVIE---SSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            G   K+    +GS  IG  R++A + E   ++  G  +          + + N   +  
Sbjct: 305 AGLYMKEKLPGVGS-SIGLDRLIAGLSELGITNAKGSYL---------DVEIFNTDENLN 354

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V     +++ A+L K G  V       +I  Q++V D    P  +++ S   + + + +K
Sbjct: 355 VQY---QEVAAKLRKEGISVEVFPDTVKINKQYSVTDKKQIPWGIMLSSNSETANTITLK 411

Query: 420 HRLTGIR-EDMSLEEVINYASH 440
           +  T    E +S+E+  +    
Sbjct: 412 NLKTREIFESISIEDAASKIKD 433


>gi|311265224|ref|XP_003130564.1| PREDICTED: hypothetical protein LOC100518856 [Sus scrofa]
          Length = 418

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD--- 363
           G+  +  + S+G+   R +  +     D  G++ P  VA  ++ +I     + +  +   
Sbjct: 231 GEKQFAYLNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALAEEDRD 289

Query: 364 ----ACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLL 398
                C     RL  V   V  D       G +F   +L 
Sbjct: 290 ALIAKCHDYRRRLLSVNIRVRVDLRDNYSPGWKFNHWELK 329


>gi|289551842|ref|YP_003472746.1| Seryl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289181373|gb|ADC88618.1| Seryl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 427

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 170 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 227 YTIPTAEVPLTNYYRDEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   L L    +   +G IG   +     E  + +  
Sbjct: 287 VRF-EKPEDSWNALEEMTTNAEAILEELKLPYRRVILCTGDIGFSAAKTYDLEVWLPSYN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS 244
              ++    +  DF     N  F    +
Sbjct: 346 DYKEISSCSNCTDFQARRANIRFKRDHA 373


>gi|197105423|ref|YP_002130800.1| seryl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|238690162|sp|B4RDI1|SYS_PHEZH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|196478843|gb|ACG78371.1| seryl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 426

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 20/238 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGA 66
             P+D       + L   M  + +    G    +  GQ A     +   + + Q    G 
Sbjct: 135 AAPKDHATLGEAMGL---MDFEAAARMSGARFVVLKGQLARLERALGQFMLDLQTQEHGY 191

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E++ P L +      + +   + +++ +  D         PT E  +T +    I +  
Sbjct: 192 TEVNPPLLVNDAAAYGTDKLPKFAEDLFQTTD----GRWLIPTAEVPLTSLVMGQIVAEE 247

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  +  +   FR E     R   G++R  +F   +  S   TPE S   + +M     
Sbjct: 248 ELPLRYTALTPCFRSEAGASGRDTRGMIRQHQFNKVELVSI-TTPEQSADEHERMVGCAE 306

Query: 183 RIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +  RL L    M    G +G     +++  V   + E     S         +   D
Sbjct: 307 AVLKRLELPFRTMLLCRGDMGFGARKTYDLEVWLPSQEKYREISSCSNTGDFQARRMD 364


>gi|170744612|ref|YP_001773267.1| seryl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|238688057|sp|B0UD12|SYS_METS4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|168198886|gb|ACA20833.1| seryl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 435

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 16/195 (8%)

Query: 24  KLMLRTGMIHQHS----KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L    G++   +     G    +  G+ A     +   + +      G  E++ P L  
Sbjct: 142 ELGEAAGLMDFEAAARLSGSRFVVLKGRLARLERALGQFMLDLHTAEHGYTEVAPPLLVR 201

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +    + +   +  +         +         PT E  +T++ R  I S   LP  F
Sbjct: 202 DEAMFGTAQLPKFRDDQFAAQPGAVEPGAPGRWLIPTAEVPLTNLVRESILSEDELPLRF 261

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +   FR E     R   G++R  +F   +  S    PE S   + +M      +  RL
Sbjct: 262 TALTPCFRAEAGAAGRDTRGMLRQHQFTKVELVSITA-PEQSAEEHERMLACAEAVLRRL 320

Query: 189 GLKSIPMRAESGPIG 203
            L    M   +G +G
Sbjct: 321 DLPYRVMTLCTGDMG 335


>gi|42782401|ref|NP_979648.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|54039677|sp|P62367|SYH1_BACC1 RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|42738326|gb|AAS42256.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 436

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 138/440 (31%), Gaps = 67/440 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 7   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 67  LQDQGKRNLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ES  I  + 
Sbjct: 122 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLEVTIQYNNRKLLNGILESINIPTER 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +              +N  
Sbjct: 179 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPL 237

Query: 267 LFDSLPENKRVSARGIEV--------------GHIFYFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +              G   Y GT Y + +      +       
Sbjct: 238 VADGVNELQQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGR 297

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 298 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADVFIIPLG 346

Query: 356 AHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              Q     C +I  +L       V  +  G ++      A+    P  +I+G   +S  
Sbjct: 347 TELQ-----CLQIAQQLRSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTE 401

Query: 415 KVEIKHRLTGIREDMSLEEV 434
            V +++   G    + L  +
Sbjct: 402 TVVLRNMKEGSEVKVPLSSL 421


>gi|330830067|ref|YP_004393019.1| histidyl-tRNA synthetase [Aeromonas veronii B565]
 gi|328805203|gb|AEB50402.1| Histidyl-tRNA synthetase [Aeromonas veronii B565]
          Length = 415

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 125/443 (28%), Gaps = 78/443 (17%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP        V  I+R+     G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 5   LPEQSPVWQKVEQILRQVVASYGYSEVRMPIVEQTHLFKRAIGEVTDVVEKEMYTFEDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   Y       + +   FR E RP+ G  R R+F     
Sbjct: 65  GDSLSLRPEGTASCVRAGIEHGLLYNQE-RRMWYMGPMFRHE-RPQKG--RYRQFHQFGV 120

Query: 161 YSFDLTPEGSKHS---------------------------------YNKMFVSYLRIFHR 187
             F +                                         Y    V+YL  +  
Sbjct: 121 ELFGINGPDIDAELIMLTHRLWRLFGISEHVTLQLNTLGQSAERAAYRDALVAYLEQYKE 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD--FPIPSENTDFDDIISL 245
              +    R  S P+    S +  V A              +            +     
Sbjct: 181 QLDEESQRRMYSNPLRVLDSKDEKVQAILAGAPRLFDHLGEESLAHFEGLKRLLESAGIK 240

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E+        +    E +  SL     V A G   G +   G              
Sbjct: 241 YEVNERLVRGLDYYNLTVFEWVTSSLGAQGTVCAGGRYDGLVEQLG-------------- 286

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G+       + G+  + ++   +E + D +               + +    +    A 
Sbjct: 287 -GQPTPAVGFAMGMERLVLMLETLELNADIR-----------PAVDVYLAMVGEGTEQAG 334

Query: 366 EKIYARLSKVGCDVFWDDM------GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            ++  RL     D   D        G     Q   AD  G  + +I+G   V + ++ IK
Sbjct: 335 FQLAERLR----DALPDLRLMSHCGGGNFKKQLKRADKSGAAIALILGETEVQNGEITIK 390

Query: 420 H-RLTGIREDMSLEEVINYASHR 441
           + R    ++ + ++  I   + +
Sbjct: 391 YLRGQAEQQTVKVDAAIALLAAK 413


>gi|330859276|emb|CBX69626.1| histidyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 357

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 15/209 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN +++   P            H   Y       + I   FR E RP+ G  R
Sbjct: 66  EMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRYE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F    A  F L           + +   R +  LG+    ++ E   IG        
Sbjct: 122 YRQFHQLGAEVFGLQGPDIDAE---LILLTARWWRALGISE-HVQLELNSIGS-----LD 172

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFD 240
             AD  E  V   +  +D           
Sbjct: 173 ARADYREALVTFLEQHVDVLDEDCKRRMY 201


>gi|255656824|ref|ZP_05402233.1| seryl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296452344|ref|ZP_06894047.1| serine--tRNA ligase [Clostridium difficile NAP08]
 gi|296877695|ref|ZP_06901723.1| serine--tRNA ligase [Clostridium difficile NAP07]
 gi|296258845|gb|EFH05737.1| serine--tRNA ligase [Clostridium difficile NAP08]
 gi|296431317|gb|EFH17136.1| serine--tRNA ligase [Clostridium difficile NAP07]
          Length = 423

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 45  LGQKALDNVNA-IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +    +       G  E+  P + + + ++ +G+   + ++M ++       
Sbjct: 169 LGARLERALLNFYLDTNTKVNGYTEVIPPFMANRNSFLGTGQLPKFEEDMFKI---EGLD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+I  + I  +  LP  +      FR E     R   G++R  +F   +
Sbjct: 226 YFMIPTSEVPLTNIHANEILKFEQLPINYTAYTPCFRSEAGSAGRDTRGLVRQHQFNKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  PE S +   K+  +   +   L L    ++  +G +G   S ++ V 
Sbjct: 286 MVKIVA-PEESYNELEKLTNNAETMLQLLNLPYRVVKICTGDLGFTASFKYDVE 338


>gi|34763854|ref|ZP_00144761.1| Seryl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886373|gb|EAA23641.1| Seryl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 424

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 16/224 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    L  G  A     +   + +      G  E   P +   ++   +G+   + ++M
Sbjct: 161 SGSRFVLYRGAAARLERALINFMLDVHTLEEGYTEHITPFMVKPEVCEGTGQLPKFEEDM 220

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            +  D     M    T E  MT+I R  I     LP  +      FR E     +   G+
Sbjct: 221 YKTTD----DMYLISTSEITMTNIHRKEILEQSELPKYYTAYSPCFRREAGSYGKDVKGL 276

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +        E S     KM  +   I  RL L    ++  SG +G   +  
Sbjct: 277 IRLHQFNKVEMVKI-TDAESSYDELEKMVNNAETILQRLELSYRVIQLCSGDLGFSAAKT 335

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  + +     ++    +   F        +          
Sbjct: 336 YDLEVWLPSQNKYREISSCSNCEAFQARRMGLKYRVPNGSEFCH 379


>gi|323467135|gb|ADX70822.1| Serine-tRNA ligase [Lactobacillus helveticus H10]
          Length = 502

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              ++  G      V     +E  +    E+  P L +      +G++  + +++  + D
Sbjct: 230 FVYYIGAGALLERAVFNFFLDENTKDDYTEVIPPYLVNDASMQGTGQFPKFHEDVYTIVD 289

Query: 99  RND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D    + +   PT E  + + FR+ I     LP     +   FR E     R   G++
Sbjct: 290 NDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLI 349

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  EF   +        E       K+  +   +  +LGL    +   +G      +   
Sbjct: 350 RMHEFRKVEMVKVCKPDESWDE-LEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 408

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
             E  + A     ++    +  DF        + D      +  
Sbjct: 409 DLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAH 452


>gi|83764980|dbj|BAE55124.1| unnamed protein product [Aspergillus oryzae]
          Length = 494

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 88/281 (31%), Gaps = 17/281 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-- 102
            G      +     E     G      P     D+  ++ + + + +E+ ++ +  DK  
Sbjct: 195 YGLFLNLALINYGLEFLWGKGYKPNQPPQFMLKDMMAKTAQLEQFDEELYKVTESEDKST 254

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                 T E+ ++ +        ++LP  +      +R E     +  +G+ R  +F   
Sbjct: 255 DKYLIATSEQPLSALHDGEWLQDKDLPIKYAGYSTCYRKEAGAHGKDAWGIFRVHQFEKI 314

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---D 215
           +       PE S  ++ +M  +    +  LGL    +   SG +    S ++ + A    
Sbjct: 315 E-QFVLTKPEQSWEAFEEMMATSEEFYKSLGLPYQIVTIVSGALNNAASKKYDLEAWFPF 373

Query: 216 TGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            GE  ++    +  D+   +    +    + +       A  A                 
Sbjct: 374 QGEYKELVSCSNCTDYQARALEIRYGTKKATDVKKSYVHALNATLCATERTLCCILENYQ 433

Query: 275 KRVSARGIE------VGHIFYFGTKYSLPMSATFKGADGKD 309
           K       E       G   +      LP  +T + A GK 
Sbjct: 434 KEDGFIVPEPLRKYIPGAPEFLPYTKELPKDSTSQKAKGKQ 474


>gi|88812662|ref|ZP_01127909.1| Histidyl-tRNA synthetase, class IIa [Nitrococcus mobilis Nb-231]
 gi|88790078|gb|EAR21198.1| Histidyl-tRNA synthetase, class IIa [Nitrococcus mobilis Nb-231]
          Length = 424

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 128/424 (30%), Gaps = 50/424 (11%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIY 106
               V   + E  +  G  E+ +P ++   L+  + G   D   KEM    DRN +++  
Sbjct: 21  VWRFVETTVCEILDSYGYEEIRLPVVEKTALFARAIGEVTDIVEKEMYTFEDRNGESLTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   ++  P  +Y     FR E RP+ G  R R+F    A  F + 
Sbjct: 81  RPEGTAGCVRACIQHGLLHKGQPRVWYG-GAMFRYE-RPQKG--RYRQFHQIGAEVFGVP 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------------------LSH 208
                     M +   R+   LGL  + ++  S  I                     L  
Sbjct: 137 GPDIDAE---MILMTGRMLRSLGLLDLQLQINSLGIPASRAEYRERLVSYFRRHHEQLDE 193

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E      T   ++  SK     P+ +      + +   S            +      L 
Sbjct: 194 EAQRRLHTNPLRILDSKSLAMQPLIAAAPSILEHLDATSQAHIEQITAILDTAGIAYTLN 253

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             L        R +        G + ++     + G       V+            AA 
Sbjct: 254 PRLVRGLDYYTRTVFEWTSERLGAQGAVCAGGRYDG------LVEQIGGPPTPAIGFAAG 307

Query: 329 IE---SSHDGKGIIWP-DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           IE   +       + P  ++  + + +       +       ++  RL      V     
Sbjct: 308 IERLVTLTAAAECVPPEPALHAYLVVV------GEEAVAPAYRLVERLRDHLPRVRL--R 359

Query: 385 GEQIG--SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYAS 439
               G   +  F  AD  G    +I  ++ ++ ++V +K  R    +  +S  E+I   +
Sbjct: 360 VNSGGGSFKSQFKRADRSGARYALIFAAEELATARVSVKDLRERTDQRRLSEAELIELLA 419

Query: 440 HRFS 443
              +
Sbjct: 420 ECIA 423


>gi|145299530|ref|YP_001142371.1| histidyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166227942|sp|A4SP01|SYH_AERS4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|142852302|gb|ABO90623.1| histidyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 425

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 130/452 (28%), Gaps = 78/452 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V  I+R+     G  E+ +P ++   L+  + G   D   K
Sbjct: 6   QAIRGMNDCLPEQSPVWQKVEQILRQVVASYGYSEVRMPIVEQTHLFKRAIGEVTDVVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DRN  ++   P            H   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFEDRNGDSLSLRPEGTASCVRAGIEHGLLYNQE-RRMWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHS---------------------------------YNKMF 178
            R+F       F +                                         Y    
Sbjct: 122 YRQFHQFGVELFGINGPDIDAELIMLTHRLWRLFGISDHVTLQLNTLGQSSERAAYRDAL 181

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSKDFMDFPIPSEN 236
           V+YL  +     +    R  S P+    S +  V A             +          
Sbjct: 182 VAYLEQYKDQLDEESQRRMYSNPLRVLDSKDERVQAILVKAPRLFDHLGEESLAHFEGLK 241

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +       + E+        +    E +  SL     V A G   G +   G     
Sbjct: 242 RLLESAGIKYEVNERLVRGLDYYNLTVFEWVTTSLGAQGTVCAGGRYDGLVEQLG----- 296

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                     G+       + G+  + ++   +E + D +               + +  
Sbjct: 297 ----------GQATPAVGFAMGMERLVLMLETLELNADIR-----------PAVDVYLAM 335

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDM------GEQIGSQFAVADLLGFPLQVIVGSKF 410
             +    A  ++  RL     D   D        G     Q   AD  G  + +I+G   
Sbjct: 336 VGEGSEQAGFQLAERLR----DALPDLRLMSHCGGGNFKKQLKRADKSGAAIALILGETE 391

Query: 411 VSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
           V + ++ IK+ R    ++ ++++  I   + +
Sbjct: 392 VQNGEITIKYLRGQAEQQTVTVDAAIALLAAK 423


>gi|299535815|ref|ZP_07049136.1| glycyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298729015|gb|EFI69569.1| glycyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 461

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 146/442 (33%), Gaps = 52/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 33  WDYGPLGVELKNNIKKAWWQKFVQESEYNVGIDAAILMNPKAWVASGHVGNFNDPMIDCK 92

Query: 98  D---RNDKAMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
               R+    I         +E++ D       ++  +  T  +  +   D  +  F  +
Sbjct: 93  SCKARHRADKIIEDAALAKGDEIIVD-----GMTFDQMKETMIKYDVVCPDCGKADFTDI 147

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES----GPIGGDL 206
           R  +F +       +T   +   Y +   +   IF         MR  +      IG   
Sbjct: 148 R--QFNLMFKTFQGVTESSTNEIYLR-PETAQGIFVNFKNVQRSMRKRTPFGIAQIGKSF 204

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            +E      T  T+ F   +   F  P E+ ++                    S    + 
Sbjct: 205 RNEITPGNFTFRTREFEQMELEFFCKPGEDLEWHAYWKEFCKNWLLNLGMKEDSMRLRDH 264

Query: 267 LFDSLPENKRVSARGIEVGHIFYFG--------TKYSLPMSATFKGAD--------GKDH 310
             D L      +   IE    F +G        T Y L       G D         + +
Sbjct: 265 EDDELSHYSNATTD-IEFKFPFGWGELWGVADRTDYDLKQHMEHSGEDFTYIDPVSNERY 323

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVC 361
                   +GA RV  A +  ++D +          + +  ++APFK +++ +       
Sbjct: 324 VPYCIEPSLGADRVTLAFLCDAYDEEELEGDDKRTVLRFHPALAPFKAAVLPLSKK---L 380

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    ++A L K    V +D+  + IG ++   D +G P  +        D +V ++HR
Sbjct: 381 SDEATDVWAELRKA-FPVDFDES-QSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHR 438

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +  M + EV  Y      
Sbjct: 439 DSMTQVRMPIAEVKAYIEKHLQ 460


>gi|282877888|ref|ZP_06286697.1| serine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299889|gb|EFA92249.1| serine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 429

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 10/224 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLEEARKSGYLEVQPPFVVNQASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +       +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 224 VQ---LDDLYLIPTAEVPVTNIFRDEILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS--HE 209
             +F   +    D  PE S  S N+M      +  +L L    ++   G +    S  ++
Sbjct: 281 LHQFDKVEIVRID-KPEHSYESLNEMLEHVEGLCKKLELPYHILKLCGGDMSFTSSICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
           F V +   +  +  S         +         + +  +E   
Sbjct: 340 FEVWSAAQKRWLEVSSVSNFESYQANRLKCRYRHAEDGKIELCH 383


>gi|260753919|ref|YP_003226812.1| histidyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553282|gb|ACV76228.1| histidyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 419

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 140/428 (32%), Gaps = 63/428 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            ++V     E +   G     +P  +S  ++  S     D   KEM    DR+ + +   
Sbjct: 23  FNHVVNKFDEIRKLYGFKRAEIPVFESTAVFARSLGETTDVVSKEMYSFPDRSGEQLTLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +T  + +     +  P         FR E RP+ G  R R+F   DA       
Sbjct: 83  PEFTAGLTRAYLTSGW-QQYSPCKIATHGPVFRYE-RPQKG--RYRQFHQIDAEVIGAAE 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------------- 214
             +      +     ++   LG+K   +      +G   S E    A             
Sbjct: 139 PEADVE---LLSLADQLLESLGIKQ-HVTLHLNTLGDSASREAWRAALIEYFQGHFDSLS 194

Query: 215 -DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            ++ E         +D   P++      I     I++ +    AA+         D+   
Sbjct: 195 QESQERLTRNPLRILDSKDPNDKI----IAEKAPIIDDYLTEEAASFFKAVTTGLDAAGV 250

Query: 274 NKRVSAR---GIEVGH-------IFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIG 320
                 R   G++              G + ++     + G   A G +    +G +  G
Sbjct: 251 AWTRDPRLVRGLDYYRHTAFEFITDQLGAQGTVLAGGRYDGLSEALGGNLTPAIG-WAAG 309

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R+   + E   D              +++I +    +  ++    I ++L   G    
Sbjct: 310 IERLAMLIDEPKEDAMN-----------VAVIPLG---EEAKNPAISILSKLRHAGISA- 354

Query: 381 WDDMGEQIGSQFAVADLL---GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             DM  + G+           G    VI+G + ++ ++  ++  +TG ++ ++L+++++ 
Sbjct: 355 --DMSWR-GNMKRRMQKANGWGVRYAVILGEEELAQNEATVRSMVTGEQQAIALDQIVDR 411

Query: 438 ASHRFSNN 445
                 N 
Sbjct: 412 ILSELRNK 419


>gi|159483697|ref|XP_001699897.1| hypothetical protein CHLREDRAFT_112211 [Chlamydomonas reinhardtii]
 gi|158281839|gb|EDP07593.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 443

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 66/443 (14%), Positives = 139/443 (31%), Gaps = 47/443 (10%)

Query: 24  KLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           + + R GMI  Q  +G   + P   +  + +           G  +   P L+S +L+V 
Sbjct: 1   QPVERKGMIDTQPPRGTRDFPPEDMRLRNWLFGEFAAVSAAFGFEQFDAPVLESEELFVR 60

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
               +    ++    D+  + +   P     +  +     K    LP  ++ I   +R E
Sbjct: 61  KAG-EEITDQLYNFEDKGGRRVALRPELTPSLARLVLQRGK-QLPLPAKWFAIGQCWRYE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESG 200
            R   G  R RE    +     +    ++       V++   F R+GL    + ++  + 
Sbjct: 119 -RMTRG--RRREHYQWNMDIVGVPGVEAEAELLAAIVAF---FERVGLTAADVGIKVSNR 172

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            +   +  ++ V  ++              P      +   +    S ++          
Sbjct: 173 KVLQAVLTQYGVPPESFAKVCVIVDKLDKLPREKVEEELRVLGVEASTIDGVLGALQLRD 232

Query: 261 DVHNEKLFDSLPENKRVSARGIEV--GHIFYF----------GTKYSLPMSATFKGADGK 308
                 L  +  E      R  E+  G+ F            G  Y        +   G+
Sbjct: 233 LDQLAALLGADSEAVAELRRLWELAAGYGFQDWLVFDPSVVRGLAYYTGTVFEARDRAGQ 292

Query: 309 DHYVQMGSYGIGAMRVVA-----------------AVIESSHDGKGIIWPDSVAPFKISL 351
              +     G    +++A                 AVI      +G++ P         +
Sbjct: 293 LRAI---CGGGRYDKLLATFGAAEDTPMAGFGFGDAVIVELLKDRGLL-PAPAHRVDDVV 348

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +   D   R A   +   L + G  V      +++   F  A+ LG    V+VG+   
Sbjct: 349 VPL---DGGLRPAAAGVATALRRGGRRVDLVLEAKKMKWAFKHAEKLGASRLVLVGASEW 405

Query: 412 SDSKVEIKHRLTGIREDMSLEEV 434
               V +K      ++++ + E+
Sbjct: 406 ERGAVVVKDLAKFEQKEIQVAEL 428


>gi|298674184|ref|YP_003725934.1| serine--tRNA ligase [Methanohalobium evestigatum Z-7303]
 gi|298287172|gb|ADI73138.1| Serine--tRNA ligase [Methanohalobium evestigatum Z-7303]
          Length = 503

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 57/209 (27%), Gaps = 33/209 (15%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMS 70
           ++ P+  +  + ++M R  +    S+G +   P   K       I+ EE     G  EM 
Sbjct: 177 KKEPKFFDDPTKEMMNRGWIKRGASRGQWIHGPQLAKLFRTFEKIVIEEMLEPLGYKEMM 236

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMI---------------------- 105
            P L   D+W +SG       E+  +     R+ +                         
Sbjct: 237 FPKLIPWDVWKKSGHAKGVYPEIYYVCPPKSRDPEYWEEVTDYYNVTHEVPTEKIKEKIG 296

Query: 106 -----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQI-QLKFRDELRPRFGVMRSREFLMKD 159
                             +         P   +       R E     G+ R  EF   +
Sbjct: 297 EPIGGLCYAQCPPFWIYLQGETIPTNEFPLKVFDHSGTSHRYESGGIHGIERVDEFHRIE 356

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
              +  T +        +   Y  IF  +
Sbjct: 357 IV-WLGTHDQVVSESKALQDKYRHIFDDI 384


>gi|325181060|emb|CCA15469.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 443

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 133/433 (30%), Gaps = 21/433 (4%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
           R     +  +G+           + V+   +    R G  +M  P L+  +L++ S   D
Sbjct: 17  RALCTFRRVRGMKDLYGEVMDIQEFVSQTFQSIVTRYGFQKMQTPVLEYTNLYMRSLGAD 76

Query: 88  SY--GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           S    KEM    D++  ++   P     +    +      + LP   +     +R E RP
Sbjct: 77  SDIVNKEMYTFQDKSGDSVSLRPEGTASVIRALKDGNLVSK-LPRKVFYDGKMYRYE-RP 134

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           + G  R REF                     M    LR         + +          
Sbjct: 135 QRG--RFREFQQFGVEYVGCRSPSVDVEVIVMADRCLRALDVRERTELHINTLGDAESRI 192

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E +    +   ++  S+  + F   +     D     +  + Q    +         
Sbjct: 193 RYKEALREYFSTRIRLLSSESQLRFERGNLLRILDSKNDQDQDLIQCAPSFGQYLSCVAS 252

Query: 266 KLFDSLPENKRVSARGIEVGHIFYF--GTKYSLPMSATFKGADGKDHYVQMGSYGI---G 320
           + F+       +   GI+  H      G  Y       F   D   H       G     
Sbjct: 253 ERFE--GVQSGLQELGIDFVHNTRLVRGLDYYCDTVFEFVEDDPSSHVKMALLAGGCYEN 310

Query: 321 AMRVVAA----VIESSHDGKGIIWPDSV---APFKISLINIKAHDQVCRDACEKIYARLS 373
            M  V       I  +     +   + +   +P  + +I + +  +       +I  +L 
Sbjct: 311 LMESVGGSKLICIGWAAGIDRLCLLNKLRPSSPTSLFIIPLPSTTRNLFPKAFEIAEKLR 370

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V       Q+  Q   AD L     + +G +    ++V +K+  +G ++ ++  +
Sbjct: 371 ETGLIVHLSHGKGQLKKQIKTADRLECDYTIFLGDQEFEAAQVRVKNMQSGEQQTIAWSQ 430

Query: 434 VINYASHRFSNNR 446
           + +    + +  +
Sbjct: 431 L-DQVYSQLAQPK 442


>gi|309792285|ref|ZP_07686757.1| seryl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308225826|gb|EFO79582.1| seryl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 422

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 11/203 (5%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G   ++  G  +     +   + +    + G  E++ P +   D+ V +G    +G+ +
Sbjct: 158 SGSRFFVLKGAGSRLQRALITWMLDLHTQQHGYSEITPPYVVKEDVLVGTGNLPRFGENL 217

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            R+       +   PT E  +T+++R  I    +LP         +R+E     R   G+
Sbjct: 218 FRI---EGADLTLIPTAEVPVTNLYRDEILEASDLPIFHVAYTPCWRNEQMSAGRDVRGI 274

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R  +F   +   F +TPE S      +  +   +   L +    ++  +  +G      
Sbjct: 275 KRVYQFDKVEMVKF-VTPETSYAELLTLVDNAEDVCKALKIPYRLLKLCTADLGTATMKY 333

Query: 210 FIVLADTGETQVFCSKDFMDFPI 232
            + +   G  +        +F  
Sbjct: 334 DLEMWAPGVEEWLEVSSCSNFEA 356


>gi|259482954|tpe|CBF77921.1| TPA: glycyl-tRNA synthetase (AFU_orthologue; AFUA_5G05920)
           [Aspergillus nidulans FGSC A4]
          Length = 689

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------IIWPDSVAPFKISLINIKAH 357
            + +++   +     G  R++ +++E  +  +        + +P  +AP K+ L+ + ++
Sbjct: 524 ENVREYTPNVIEPSFGIGRILYSLMEHVYYYREGDEARGVLSFPPVIAPTKVLLVPLSSN 583

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R   +++  +L ++G     DD    IG ++A  D LG P  V V  + V D+ + 
Sbjct: 584 -PAFRPMVQELTTKLRRLGVSSRVDDSSASIGKRYARNDELGTPFGVTVDFQSVKDNTIT 642

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R +  +   S EE++        
Sbjct: 643 LRDRDSTKQVRASQEEILQALKSLVE 668



 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           +PF    I   FR+E+ PR G++R REFLM +   F + PEG
Sbjct: 286 MPFASASIGKSFRNEISPRAGLLRVREFLMAEIEHF-VDPEG 326



 Score = 44.2 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y + P G   L+N+    R+        +E+    L   ++   SG  D +   M
Sbjct: 85  SGLYDYGPPGCAVLNNIVETWRKHFVLEEDMLEVDCTMLTPEEVLKTSGHVDKFADWM 142


>gi|110589390|gb|ABG77204.1| seryl-tRNA synthetase class IIa [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 312

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 7/164 (4%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +  ++ +   + G  E  VP L ++D    +G+   + +E+ +L   ++      PT 
Sbjct: 64  RALIQLMLDTHIQHGYTEAYVPYLVNSDSLRGTGQLPKFEEELFKLQGEHEYY--LIPTA 121

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T++ R  I     +P  +      FR E     +   G++R  +F   +     + 
Sbjct: 122 EVPLTNLVRDVIIDADEMPRRYVAHTPCFRSEAGSYGKDTRGMIRQHQFEKVELVQI-VR 180

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            E S  +  ++      I  +L L    +   +G IG   +  +
Sbjct: 181 AEDSFDALEQLTSHAEAILQKLELPYRVVTLCTGDIGFSATKTY 224


>gi|302771363|ref|XP_002969100.1| hypothetical protein SELMODRAFT_231245 [Selaginella moellendorffii]
 gi|300163605|gb|EFJ30216.1| hypothetical protein SELMODRAFT_231245 [Selaginella moellendorffii]
          Length = 419

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 89/294 (30%), Gaps = 35/294 (11%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +  R A +A H+             G Y   P G +    +     +     G  ++  P
Sbjct: 151 DVERGAAVAGHR-------------GYYLLDP-GFELNMALVNFGLKFLKDRGYRKIQTP 196

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           TL    +     +   + +E+  LA    +      T E+ +    + +  +  +LP  +
Sbjct: 197 TLMDKAVMKCCAQLSQFDEELYELA---GEGKYLIATSEQALCGYLKDNNVAPESLPLRY 253

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                 FR E     +   G+ R  EF   +      +PE S     +M  +    + +L
Sbjct: 254 AGYSSCFRKEAGSHGKDTLGIFRVHEFQKVE-QFCVTSPETSWDMLEEMIKTSEDFYQQL 312

Query: 189 GLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           GL    +   SG +    +     E    A     ++    +  D+   S N      + 
Sbjct: 313 GLPYQVVNVVSGELNDAAAKKYDLEAWFPAAGKYEELVSCSNCTDYQARSLNIKSGKKLV 372

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                            V N           R   R  EV   F  GT + LP 
Sbjct: 373 HLLNCTLVATQRTMCCIVEN--------YQTRNGVRVPEVLQPFMDGTTF-LPF 417


>gi|260771395|ref|ZP_05880320.1| histidyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260613521|gb|EEX38715.1| histidyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|315180975|gb|ADT87889.1| histidyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 398

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 136/411 (33%), Gaps = 34/411 (8%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           +  I++   +  G  E+ +P ++   L+  + G   D   KEM    DRN  ++   P  
Sbjct: 1   MEGIVKNVISAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRNGDSLTLRP-- 58

Query: 111 EEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
            E      RS I++          + +   FR E RP+ G  R R+F       F +   
Sbjct: 59  -EGTAGCVRSGIENGLLYNQEQRLWYMGPMFRHE-RPQKG--RYRQFHQCGVEVFGIDGP 114

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                   M     R++  LG+    +R E   IG   +      A     + +      
Sbjct: 115 DVDAELIMM---TARLWRELGIADY-VRLELNSIGSLEARANYRTALIEYLEQYQDVLDE 170

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           D            + + N  V+         +  +  E         + + A GIE    
Sbjct: 171 DCKRRMYTNPLRVLDTKNPDVQAVLGDAPKLSDYLDTESKQHFAGLCELLDAAGIEYTIN 230

Query: 288 FYF--GTKY---------SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                G  Y         +  + A      G  +   +   G  A   V   +      +
Sbjct: 231 ERLVRGLDYYNRTVFEWMTDSLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGL---ER 287

Query: 337 GIIWPDSVAPFKI---SLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQ 391
            ++  +++    +     + +    +    A  K+  +L +   G  V     G     Q
Sbjct: 288 LVLMMETLGNTDVRRNVDVYMVTAGEGTLTAGMKLAEQLREQIPGLRVMTHFGGGNFKKQ 347

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  AD +G  + +++G   V++  V +K    G +E +S  EV +  +H  
Sbjct: 348 FKRADKVGAAVALVLGENEVAEHTVVLKDLAGGEQETISQTEVASKLAHLV 398


>gi|94309640|ref|YP_582850.1| seryl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|166223277|sp|Q1LQJ5|SYS_RALME RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|93353492|gb|ABF07581.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with
           serine [Cupriavidus metallidurans CH34]
          Length = 435

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 85/237 (35%), Gaps = 24/237 (10%)

Query: 17  DAEIASH-KLMLRTGMIHQHSK---GIYS-WLPLG-QKALDNVNAIIREEQN-RTGAIEM 69
           D EI  H  +  R G+  + +    G    +L  G  +    +  ++ +      G  EM
Sbjct: 133 DFEIKDHVDVGARLGLDFETATKVTGSRFAFLRGGVARMHRALVQLMVDTHTLEHGYTEM 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL------ADRND--KAMIYGPTHEEVMTDIFRSH 121
            VP + +A     +G+   +  ++ ++       D  D  +     PT E  +T++ R  
Sbjct: 193 YVPYIVNAASMRGTGQLPKFEDDLFKVPRKVGGEDGQDAIENFYLIPTAEVPLTNVVRDA 252

Query: 122 IKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           I +   LP  F      FR E     +   G++R  +F   +     +  E S  +  +M
Sbjct: 253 IVAAEKLPLRFVAHTPCFRSEAGSYGKDTRGMIRQHQFDKVEMVQV-VPSEQSMDALEQM 311

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
                 I  +L L    +   +G +G   +     E  + A     ++       DF
Sbjct: 312 TGHAETILKKLELPFRTVVLCTGDMGFGSTKTYDIEVWIPAQNTYREISSCSSMGDF 368


>gi|117926864|ref|YP_867481.1| histidyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|117610620|gb|ABK46075.1| histidyl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 400

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 64/423 (15%), Positives = 125/423 (29%), Gaps = 48/423 (11%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           +P        + + +R    + G  E+ +P  +  +L+  +     D   KEM    DR 
Sbjct: 1   MPDESVRWQFIESTLRRVFGQYGFGEIRIPLFEKTELFARAVGETTDIVEKEMYTFEDRG 60

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +++   P   E    + RS I +   R LP+  Y I   FR E RP+ G  R R+F   
Sbjct: 61  GESLALRP---EGTASVVRSFINNGLDRQLPWKAYYIGPMFRYE-RPQKG--RYRQFHQA 114

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            A  F      +      M    LR    +G+ +  ++ E   +G          A   +
Sbjct: 115 GAELFGAEGPLADAEIMAMV---LRSLQEIGI-AGQLQLEINSLGCPA----CRPAYRAQ 166

Query: 219 TQVFCSKDFMDFPIPSENTDFDD---IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              +            +N    +   ++       +  A  A     H     D      
Sbjct: 167 LTDYLQSHHGALCGNCQNRLERNPLRVLDCKVESCKAIAKEAPKMRDHLCAGCDHHFAGL 226

Query: 276 RVSARGIEVGHIFYF----GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRV----- 324
                 +++ ++       G  Y        T      ++     G Y      +     
Sbjct: 227 TAHLDALQLPYVINPMMVRGLDYYTRTAFEVTTNALGAQNAVAAGGRYDGLVTEMGGKAT 286

Query: 325 -VAAVIESSHDGKGIIWPDSVA-PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                         ++   ++A P     +     D       E++       G  V  +
Sbjct: 287 PAIGFAMGLERLALLMDESAIAPPLPALYVVSLEADTAAFGFAEQV----RGAGLAVEVN 342

Query: 383 DMGEQIGSQFAVADLLG-----FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             G  +      + +            I+G     + +V +K    G +  +S +E ++ 
Sbjct: 343 LQGGSM-----KSQMKKAGRSNARWCAIIGQTEAQNQQVVLKDMQEGAQATLSWDEALHR 397

Query: 438 ASH 440
              
Sbjct: 398 IRA 400


>gi|119356203|ref|YP_910847.1| histidyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|166980044|sp|A1BDE6|SYH_CHLPD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119353552|gb|ABL64423.1| histidyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 429

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 143/430 (33%), Gaps = 34/430 (7%)

Query: 33  HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDSYG 90
           +Q  KG     P        V  ++    +  G  E+  P  +  +L+  S     D  G
Sbjct: 4   YQVVKGARDIFPDEIVRWHYVEDVVHRLASLYGYSEIRTPVFEYTELFQRSIGTTTDIVG 63

Query: 91  KEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           KEM     D   +++   P     +                  + +   FR E RP+ G 
Sbjct: 64  KEMFSFLPDPQGRSITLRPEMTAGVMRAVLQKNLLSTAPIHKLFYLSELFRKE-RPQAG- 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---------- 199
            R R+F    A    +    S  +  ++    +++F  LG++ + +R  +          
Sbjct: 122 -RQRQFSQFGAELLGV---SSPAAVAEVITFMMQVFETLGIRGLKLRINTLGDSSDRARY 177

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             I       F    D    + F         + S+N D  +II     +    +  A  
Sbjct: 178 REILRAYLAPFYDRLDLASRERFEKNPLR--ILDSKNPDMQEIIEGAPTLHDSLSHEALE 235

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---SLPMSATF-KGADGKDH--YVQ 313
                    DS      +  R +  G  +Y  T +   S  + A    G  G+      +
Sbjct: 236 DFEKVRFYLDSRSIAYDIDYRLV-RGLDYYCHTAFEVTSPELGAQDAIGGGGRYDGLAKE 294

Query: 314 MGSYGIGAMRVVAAVIE---SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +GS G       AA +E    + + +G+    ++ P    +  + A      D   ++  
Sbjct: 295 LGSSGDVPASGFAAGMERVLITMEKQGLF--AALRPSGPKVYVV-AQQHALLDHALQVAY 351

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G     D  G  + +Q   A+ +     + +G   V      +K+ +T  +   S
Sbjct: 352 RLRREGISTEVDLAGRSMKAQMRDANRMRACFALFIGEDEVVSGSYALKNLVTADQTAQS 411

Query: 431 LEEVINYASH 440
           +E +I   + 
Sbjct: 412 IETIIEMLNQ 421


>gi|238855568|ref|ZP_04645871.1| serine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260665157|ref|ZP_05866007.1| seryl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282932346|ref|ZP_06337781.1| serine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|238831852|gb|EEQ24186.1| serine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260561211|gb|EEX27185.1| seryl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281303567|gb|EFA95734.1| serine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 435

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 13/218 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G      V     +E  + G  E+  P L + D    +G++  + +++  + D
Sbjct: 163 FVYYKGAGALLERAVYNFFLDENTKEGYTEVIPPYLVNDDSMQGTGQFPKFTEDVYTIVD 222

Query: 99  RNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +D          PT E  + + FR  I   + LP     +   FR E     R   G++
Sbjct: 223 NDDPDKPLNLTLIPTAEVPLVNYFRGDIVDGKKLPINVTALTPAFRSEAGSAGRDTRGLI 282

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +       PE S +  +++  +   +  +LGL    +   +G      +   
Sbjct: 283 RMHQFNKVEMVKV-CKPEESWNELDRLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTY 341

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             E  + A     ++    +  DF        + D   
Sbjct: 342 DLEVWMPAQNKYREISSCSNCTDFQARRAQIRYRDEDG 379


>gi|291319992|ref|YP_003515250.1| seryl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752321|emb|CBH40292.1| Seryl tRNA synthetase [Mycoplasma agalactiae]
          Length = 422

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 13/216 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G K    +   + +     G  E SVP L   ++   +G+   +  ++  +   N   M 
Sbjct: 171 GSKLARALQNFMLDLHTANGYKEYSVPVLVKPEILFGTGQLPKFKDDLFFMEQTN---MY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++ + I      P         FR E     +   G++RS +F   +  
Sbjct: 228 LIPTAEVPLTNLYNNEIIDLSQ-PVRLTGFTECFRSEAGSGGKDMKGIVRSHQFKKVELV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTG 217
               + +  K  + +M      +   L L    ++  +G +G      +  E  + ++  
Sbjct: 287 KI-TSEKDWKFEFKQMLEQAKLVLEELELPYRELQLCTGDLGFSSRTTVDLEVWLPSELK 345

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             ++       DF        + D  +         
Sbjct: 346 YREISSVSYMGDFQARRAMIRYRDDNNEVKFAHTMN 381


>gi|315659988|ref|ZP_07912846.1| serine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315494889|gb|EFU83226.1| serine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 447

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +  +   + G  EM VP L +AD    +G+   + +++ ++     + +
Sbjct: 190 GAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMFGTGQLPKFEEDLFKV---EKEGL 246

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F   + 
Sbjct: 247 YTIPTAEVPLTNYYRDEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEM 306

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   PE S ++  +M  +   I   L L    +   +G IG   +     E  + +  
Sbjct: 307 VRF-EKPEDSWNALEEMTTNAEAILEELKLPYRRVILCTGDIGFSAAKTYDLEVWLPSYN 365

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS 244
              ++    +  DF     N  F    +
Sbjct: 366 DYKEISSCSNCTDFQARRANIRFKRDHA 393


>gi|331703343|ref|YP_004400030.1| histidyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801898|emb|CBW54051.1| Histidyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 414

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 137/427 (32%), Gaps = 36/427 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G   +     K  + V   ++E  ++    E+  P  +S +L++ S G   D   K
Sbjct: 3   QKPRGTQDFFLDEAKLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGSTTDIVSK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM    D+ +++++  P     +   +  + + +  NLP   Y I   FR E RP+ G  
Sbjct: 63  EMYEFVDKKNRSLVLKPEGTASVVRAVIENKLYAEENLPLKVYYISPMFRYE-RPQNG-- 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R+F       F       +  Y  +     +I ++  L        +  I G    ++
Sbjct: 120 RYRQFHQLGIEVFGSD--SIQQDYE-VLNIATKIINQFKLNKNIKIYTNFLITGKNREDY 176

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+      +      D       +     D  I         +        +  E+    
Sbjct: 177 ILELKKYLSDFKLCNDCNTRLEKNPLRVLDCKIDDKQFKNVPS----MQDFLTKEQKTRY 232

Query: 271 LPENKRVSARGIEVGHIFYF--GTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
               +      I V H      G  Y         +   + +   +  G Y      +  
Sbjct: 233 DQTLELFKKTNISVIHDDKLVRGLDYYTGFIFEIKYLNNNNEQTIIAGGRYNNLVNEIGN 292

Query: 327 AVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             + +   G G+  + + +     +L+N K +  +     + +   L++       D   
Sbjct: 293 INLAACGFGMGLERFINIIKEQNSNLVNQKTNIDLYTICIDDLAIELNQQ----ILDLTR 348

Query: 386 EQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             IG +                AD L     +I+GS     ++  IK ++   +   +L 
Sbjct: 349 -SIGLKADSNYYHLSLKSALKKADKLNPKYVIILGSNEAKTNEFIIKDQINKTQIKTTLT 407

Query: 433 EVINYAS 439
           + I    
Sbjct: 408 KFIKDLK 414


>gi|321441303|gb|ADW85066.1| glu- + pro-tRNA synthetase [Euclea delphinii]
          Length = 134

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           S R I+     + G  +S      +   +  +  +V   S+GI   R +  ++    D +
Sbjct: 15  SGRAIQGATSHHLGQNFSKIFDVIYDDPETQEKKHVFQNSWGIT-TRTIGVMVLVHGDNR 73

Query: 337 GIIWPDSVAPFKISLIN-------IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
           G++ P  +A  +I ++             +   D+CE +   L   G     D       
Sbjct: 74  GLVLPPRIADVQIIVVPCGITASSTPEDRKNLYDSCEALVKDLVVAGLRAEGDYRENYSP 133

Query: 389 G 389
           G
Sbjct: 134 G 134


>gi|149375010|ref|ZP_01892783.1| histidyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149360899|gb|EDM49350.1| histidyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 417

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 64/189 (33%), Gaps = 10/189 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRN 100
           LP        V   +R+  ++ G  E+ +P ++  DL+  S G   D   KEM    DRN
Sbjct: 5   LPEQTPVWQFVEDTVRKVLSQYGYQEIRMPVVEQTDLFKRSIGEVTDIVEKEMYTFEDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   +       +     FR E RP+ G  R R+F     
Sbjct: 65  GDSLTLRPEGTAGCVRAAEEHGLLFNQT-RRLWYTGPMFRHE-RPQKG--RYRQFHQIGV 120

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F +           + V   R++  LGL     R E   IG   + +    A      
Sbjct: 121 ECFGMAGPDIDAE---LLVLTARLWRALGLCE-HTRLEINSIGTSAARKEYREALVAYLS 176

Query: 221 VFCSKDFMD 229
            +  +   D
Sbjct: 177 DYRDQLDDD 185


>gi|156937361|ref|YP_001435157.1| glycyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|156566345|gb|ABU81750.1| glycyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 580

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 61/141 (43%), Gaps = 6/141 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG----IIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R++   +E +   +     +  P  +AP +  ++ +     +  
Sbjct: 426 GERFVPHVVEPSFGVERLLYVTLEYALKEREGRLVLSLPRRLAPIEAVVLPLLEEKPLV- 484

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  ++++  L+  G  V +D+ G  IG ++A  D +G P  + V  + + D+ V ++ R 
Sbjct: 485 EKAKEVWKLLADAGFRVEYDEKG-SIGRRYARYDEVGVPAAITVDFQTLEDNTVTLRDRD 543

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + +EE+        +
Sbjct: 544 TWKQVRVRVEELPGKLRAFLN 564



 Score = 44.2 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             DK  I   T +    +  R +      LPF   QI    R+E+ PR G++R REF + 
Sbjct: 156 EGDKGFIRPETAQGAFVNFKRVYQYMRERLPFGIAQIGRVGRNEISPRQGLLRLREFTIA 215

Query: 159 DAYSF 163
           +   F
Sbjct: 216 EIEFF 220



 Score = 41.1 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN---RTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           G Y   PLG++  + +  + +E+     +   +EM  P +    +   SG  +++  
Sbjct: 29 AGFYDLGPLGKELKNKIVELWKEKLVRPLQRMVVEMETPIITPYKVLEASGHVENFTD 86


>gi|223040985|ref|ZP_03611245.1| histidyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222877741|gb|EEF12862.1| histidyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 415

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 128/433 (29%), Gaps = 52/433 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP      + +  I  E     G   +  P L+   L+  S     D  GKEM +
Sbjct: 7   GMKDVLPPQSGLYERIIKICEEVAKNYGYEFVLSPHLEQTALFRRSVGESSDIVGKEMYQ 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+    +   P     +   F             ++     FR E RP+ G  R REF
Sbjct: 67  FEDKGGNDVCLRPEGTAGVVRAFIEAKFDRTGGVRRYFYHGSMFRYE-RPQKG--RLREF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVL 213
                  F    E S +    + +    IF RLG+K+  +    G     G    + +  
Sbjct: 124 HQFGCECFG---EPSVYEDASVILMINEIFSRLGIKTKLLINSLGDAASMGAYRQKLVKF 180

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  E Q+           P    D        S  + +         +++E   +    
Sbjct: 181 LDAHEEQICEDCKRRKLTNPIRVLD----CKAQSCQKIYENAPLIIGSLNDECAGEFKKL 236

Query: 274 NKRVSARGIEVGHIFYF--GTKYSLPMSATFKGAD----------GKDHYVQMGSYGIGA 321
            + +S  G+E         G  Y    +  F  ++          G+   +     G  +
Sbjct: 237 QEILSGNGVEFEIDPKLVRGLDYYCKTAFEFVSSEIGAKSAVAGGGRYDRLVEYLGGKAS 296

Query: 322 M--------RVVAAVI---ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                      +  ++   ES     G              + I A D    DA  KI  
Sbjct: 297 YGVGFAMGIERIMEILGGRESQSARSG--------------VYIGAMDADGVDAVYKIAI 342

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K    V      +++      AD     + + VG   +   K+ +K       + + 
Sbjct: 343 NLRKS-IPVLVSYEPKKLQKHLNAADNANTRICLCVGEDELKSGKIWLKDLSEKAEKTLD 401

Query: 431 LEEVINYASHRFS 443
           L ++        +
Sbjct: 402 LADLETELKRILN 414


>gi|206968745|ref|ZP_03229700.1| histidyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206735786|gb|EDZ52944.1| histidyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 426

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 143/444 (32%), Gaps = 67/444 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LQDQGKRELALRYDLTIPFAKVVAMNPNLR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               ++  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMGMAF-ELFRTLNLEITIQYNNRKLLNGILQAINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D      + +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKETFNNPL 238

Query: 267 LFDSLPENKRVSARGIEVG----HIF----------YFGTKYSLPMSATFKGA------- 305
           + D + E +++    I +G     IF          Y GT Y + +      +       
Sbjct: 239 VADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 299 YDNIIGAFRGDNINYPTVGISFGLDV-------IYTALSQKETI----SSTADLFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              Q     C +I  +L       V  +  G ++      A+    P  +I+G   +S  
Sbjct: 348 TELQ-----CLQIAQQLRSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTE 402

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
            V +++   G    + +  + +Y 
Sbjct: 403 TVMLRNMKEGSEVKVPISSLSSYL 426


>gi|228473450|ref|ZP_04058203.1| serine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275057|gb|EEK13860.1| serine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 423

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 15/229 (6%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E  +  +I   +L ++         G   +   G K    + +   ++    G  E  VP
Sbjct: 145 ELAKKYDIIDFELGVKL-----TGAGFPVYKGKGAKLQRALISYFLDKNTAAGYQEFQVP 199

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + + D    +G+      +M  +   N   +   PT E  +T+IFR  I S  + P   
Sbjct: 200 HMVNEDSGYGTGQLPDKEGQMYHVQLDN---LYLIPTAEVPVTNIFRDVILSEADFPICC 256

Query: 133 YQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                 FR E         G+ R  +F   +    +  P+ S  +  +M      I + L
Sbjct: 257 TAYTPCFRREAGSYGAHVRGLNRLHQFDKVEIVRIEH-PDRSYQALTQMVEHVKGILNEL 315

Query: 189 GLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            L    +R   G +G    ++++F V +   E  +  S         + 
Sbjct: 316 KLPYRILRLCGGDLGFTSAITYDFEVYSTAQEKWLEISSVSNFETFQAN 364


>gi|167949909|ref|ZP_02536983.1| seryl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 312

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 7/164 (4%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +  ++ +   + G  E  VP L ++D    +G+   + +E+ +L   ++      PT 
Sbjct: 64  RALIQLMLDTHIQHGYTEAYVPYLVNSDSLRGTGQLPKFEEELFKLQGEHEYY--LIPTA 121

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLT 166
           E  +T++ R  I     +P  +      FR E     +   G++R  +F   +     + 
Sbjct: 122 EVPLTNLVRDVIIDADEMPRRYVAHTPCFRSEAGSYGKDTRGMIRQHQFEKVELVQI-VR 180

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            E S  +  ++      I  +L L    +   +G IG   +  +
Sbjct: 181 AEDSFDALEQLTSHAEAILQKLELPYRVVTLCTGDIGFSATKTY 224


>gi|254779990|ref|YP_003058097.1| seryl-tRNA synthetase [Helicobacter pylori B38]
 gi|254001903|emb|CAX30156.1| Seryl-tRNA synthetase (Serine--tRNA ligase) (SerRS) [Helicobacter
           pylori B38]
          Length = 415

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +  ++ +   + G   +  P L +  +   +G+   + +++ ++ + N   +
Sbjct: 170 FGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENEN---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++   I S  NLP         FR E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVTLTNLYNDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVEL 286

Query: 161 Y-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
                 T   +      M  S   I   L L    ++  SG +G   S
Sbjct: 287 VAITHPTESDAMQE--HMLESASEILKALELPHRFVQLCSGDLGFSAS 332


>gi|118497244|ref|YP_898294.1| seryl-tRNA synthetase [Francisella tularensis subsp. novicida U112]
 gi|194323546|ref|ZP_03057323.1| seryl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
 gi|166222726|sp|A0Q5M5|SYS_FRATN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|118423150|gb|ABK89540.1| seryl-tRNA synthetase [Francisella novicida U112]
 gi|194322401|gb|EDX19882.1| seryl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 426

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 12/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
              K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D  
Sbjct: 170 KIAKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKL--EGDFE 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +
Sbjct: 228 YSLIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   +G + S   +     ++  +L L    M+  +G +          E  + + 
Sbjct: 288 LVHITAADKG-EESLELLTSHAEKVLQKLNLPYRVMKLCTGDMSFSAKKTYDLEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDF 230
               ++       DF
Sbjct: 347 NTYREISSCSWCGDF 361


>gi|52627363|gb|AAU84694.1| seryl-tRNA synthetase [Prevotella intermedia]
          Length = 289

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 97/317 (30%), Gaps = 67/317 (21%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P L +    + +G+      +M  
Sbjct: 24  GAGFPIYIGKMARFQRALEAFFLEEARKSGYLEVQPPLLVNQASGLGTGQLPDKEGQMY- 82

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 83  --HAQADDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSSCFRREAGSYGKDVRGLNR 140

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +F   +    D TP+ S  S N+M      +  +L L    +R      GGD+S    
Sbjct: 141 LHQFDKVEIVRID-TPQHSYQSLNEMLEHVENLLIKLELPYRILRLC----GGDMSF--- 192

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  T   C    +         +   + +  S                        
Sbjct: 193 -------TSAICYDFEVWSAAQGRWLEVSSVSNFESYQANRLHC---------------- 229

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIE 330
                                +Y           D K      +    +   R+VAA++E
Sbjct: 230 ---------------------RYRRA-------EDKKIELCHTLNGSALALPRIVAAILE 261

Query: 331 SSHDGKGIIWPDSVAPF 347
           ++   +GI  P  + P+
Sbjct: 262 NNQTPEGIRVPKVLVPY 278


>gi|126175191|ref|YP_001051340.1| histidyl-tRNA synthetase [Shewanella baltica OS155]
 gi|153001517|ref|YP_001367198.1| histidyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217972554|ref|YP_002357305.1| histidyl-tRNA synthetase [Shewanella baltica OS223]
 gi|304410034|ref|ZP_07391653.1| histidyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302253|ref|ZP_07582011.1| histidyl-tRNA synthetase [Shewanella baltica BA175]
 gi|166228612|sp|A3D6V8|SYH_SHEB5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228613|sp|A6WQP6|SYH_SHEB8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782344|sp|B8E9S8|SYH_SHEB2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125998396|gb|ABN62471.1| histidyl-tRNA synthetase [Shewanella baltica OS155]
 gi|151366135|gb|ABS09135.1| histidyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217497689|gb|ACK45882.1| histidyl-tRNA synthetase [Shewanella baltica OS223]
 gi|304351443|gb|EFM15842.1| histidyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306914291|gb|EFN44712.1| histidyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 426

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 71/449 (15%), Positives = 148/449 (32%), Gaps = 72/449 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGK 91
           Q  +G+   LP        V A++R   +  G  E+  P +++ DL+  S G   D   K
Sbjct: 6   QAIRGMNDILPTQSPLWQKVEAVLRSSVSAYGYSEIRTPIVENTDLFKRSIGEVTDIVEK 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   AD N  ++   P            +   Y       + +   FR E RP+ G  R
Sbjct: 66  EMYTFADNNGDSLTLRPEGTASTVRAGNENGLLYNQE-QRLWYMGPMFRHE-RPQKG--R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAES------GPIGG 204
            R+F       + +           + +   R++ +LG+   + +   +        +  
Sbjct: 122 YRQFNQFGVEVYGIGTADIDAE---VLMLSARLWEKLGISDHVSLELNTLGDPAERAVYR 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           D    F+        +    + + +    + S++ +   I++    +  +    + T   
Sbjct: 179 DALIAFLEQHKDALDEDSKRRMYSNPLRVLDSKDQNVQAILAGAPELMDFLGEESKTHFS 238

Query: 263 HNEKLFDSLPENKR---VSARGIEVG--HIFYF-------------GTKYSLPMSATFKG 304
              +L D++           RG++     +F +             G +Y   + A   G
Sbjct: 239 QLRELLDAVGIKYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRY-DGLVAQLGG 297

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D       MG      +  +  ++E+    K I       P ++ +      D    + 
Sbjct: 298 KDTPAVGFAMG------LERIVLLLETLELNKDI-------PSEVDVYVTAMGDSCLVE- 343

Query: 365 CEKIYARLSKV-----------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
             KI   L              G +V           Q   AD  G  + +++G   +++
Sbjct: 344 AIKIAQELRSALPNLKVMSHCGGGNVK---------KQMKRADKSGASVALLIGEDELAE 394

Query: 414 SKVEIKH-RLTGIREDMSLEEVINYASHR 441
             V +KH R    ++ ++   +  + +  
Sbjct: 395 GMVTVKHLRNDIEQQRVARSALGAFLAEL 423


>gi|24373862|ref|NP_717905.1| seryl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|30173158|sp|Q8EEQ9|SYS_SHEON RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|24348273|gb|AAN55349.1|AE015672_5 seryl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 428

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 19/229 (8%)

Query: 20  IASHKLMLRT--GMIHQHS---KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSV 71
           I  H  +     G+  + +    G    +  GQ A     +   + +      G  E  V
Sbjct: 136 IKDHIDLGEGLNGLDFKSAVKITGSRFIVMKGQIARLNRALGQFMLDLHTTEHGYTEAYV 195

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           P L +    + +G+   +G+++          + +   PT E  +T++ R  I     LP
Sbjct: 196 PLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDSIVDEDELP 255

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +     + PE S  +   +      + 
Sbjct: 256 IKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVELVQL-VKPEDSMAALEVLTGHAETVL 314

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            RLGL    +   +G +G   S     E  +       ++    +  DF
Sbjct: 315 QRLGLPYRTVVLCTGDMGFGSSKTYDIEVWLPGQNTYREISSCSNMKDF 363


>gi|317010146|gb|ADU80726.1| seryl-tRNA synthetase [Helicobacter pylori India7]
          Length = 415

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 8/167 (4%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +  ++ +   + G   +  P L +  +   +G+   + +++ ++ + N   +
Sbjct: 170 FGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENEN---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++   I S  NLP         FR E     +   G++R  +F   + 
Sbjct: 227 YLIPTSEVTLTNLYNDTIVSVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            +     E        M  S   I   L L    ++  SG +G   S
Sbjct: 287 VAITHPKESDAMQ-ECMLESASEILKALELPHRFVQLCSGDLGFSAS 332


>gi|219128753|ref|XP_002184570.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404020|gb|EEC43969.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 462

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 79/272 (29%), Gaps = 17/272 (6%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
           Y     G      +        +  G   +  P   + ++     + + + +++ +++ +
Sbjct: 167 YFLTNAGVMLNQAIINYSIAFLSARGYNVLQPPFFMNKEVMAGIAQLEDFDEQLYKVSGK 226

Query: 100 NDK-----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            D            T E+ +    +      + LP  +  I   FR E     +   G+ 
Sbjct: 227 TDDPDGATEKYLIATSEQPICAYHKGDWIDPKTLPLRYAGISTCFRKEAGSSGKDIRGIF 286

Query: 151 RSREFLMKDAYSFDLTP-EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----D 205
           R  +F   + +   +   E S+    +M  +    +  LG+    +   SG +       
Sbjct: 287 RVHQFEKVEQFCLTVDDFEISQAEQKRMLQAAKDFYESLGVGYRVVCLVSGELNDAAVKK 346

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E          ++    +  D+          +      +  + +  +   S +   
Sbjct: 347 YDLEGWFPGQNTYRELVSCSNCTDYQARGVGVRCGNKTKSMDLTARASYVHMLNSTLCAT 406

Query: 266 KLFDSLPENKRVSARGI---EVGHIFYFGTKY 294
                       +  G+   EV   F  GT +
Sbjct: 407 GRGICCLLETYQTETGVVVPEVLRPFMGGTDF 438


>gi|254456443|ref|ZP_05069872.1| seryl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083445|gb|EDZ60871.1| seryl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 419

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 11/208 (5%)

Query: 51  DNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGP 108
             ++  + +         E+S P + S +    +G+   +  +   +  D+        P
Sbjct: 165 RALSNFMLDTHININEYQEISPPLIASDNTMFGTGQLPKFENDQFEIKFDQGSDRKFLIP 224

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFD 164
           T E ++T+I +  I   +NLP  F      FR E     +   G++R  +F   +  S  
Sbjct: 225 TAEVILTNIVKDKIIDKKNLPMRFVASTPCFRKEAGSYGKDTKGMIRQHQFYKVELVSI- 283

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQ 220
           +  E       +M      I  +L L    +   SG +G         E  + ++    +
Sbjct: 284 VEKENCLKELERMTDCATDILDKLKLPYKKIILCSGDMGFSAEKTYDIEVWLPSENKYRE 343

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +        F      T + +       
Sbjct: 344 ISSCSSCSTFQAQRMKTRYKNENKETMF 371


>gi|126700456|ref|YP_001089353.1| seryl-tRNA synthetase [Clostridium difficile 630]
 gi|115251893|emb|CAJ69728.1| Seryl-tRNA synthetase 1 (Seryl-tRNA(Ser/Sec) synthetase 1)
           (Serine--tRNA ligase 1) (SerRS 1) [Clostridium
           difficile]
          Length = 423

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 45  LGQKALDNVNA-IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +    +       G  E+  P + + + ++ +G+   + ++M ++       
Sbjct: 169 LGARLERALLNFYLDTNTKVNGYTEVIPPFMANRNSFLGTGQLPKFEEDMFKI---EGLD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+I  + I  +  LP  +      FR E     R   G++R  +F   +
Sbjct: 226 YFMIPTSEVPLTNIHANEILKFEQLPINYTAYTPCFRSEAGSAGRDTRGLVRQHQFNKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  PE S +   K+  +   +   L L    ++  +G +G   S ++ V 
Sbjct: 286 MVKIVA-PEESYNELEKLTNNAETMLQLLNLPYRVVKICTGDLGFTASFKYDVE 338


>gi|302524212|ref|ZP_07276554.1| histidyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302433107|gb|EFL04923.1| histidyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 407

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 127/403 (31%), Gaps = 40/403 (9%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
            V   + +   R G +    P L+ A+++      +   +++  L  R  + +   P   
Sbjct: 2   QVFGHLYDVLERYGYLRYDGPILEQAEVYERKSGQEIADQQLYTLTTRGGERLALRPEMT 61

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
             +  +   H KS  + P  +Y      R E RP+ G  R RE    +A  F       +
Sbjct: 62  PSVARMIAGHAKS-LSFPVRWYSHPNCHRYE-RPQRG--RVREHWQINADIFGSESANCE 117

Query: 172 HSYNKMFVSYL-------RIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLA--DTGETQV 221
               ++    +        +F  R+  +++   A +  +G    H   V A  D  E   
Sbjct: 118 IEMFELIHDLMGAVGATPDMFAVRVNDRNLLSSALTDVVGISPDHLPQVFALVDRWEKTS 177

Query: 222 FCSKDFMDFPIPSENTDFDDIIS--LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                     I   +  ++ +              P A  ++ +  K+  S   +     
Sbjct: 178 AEEHAASAAEIGLSDKQYEKLAEALGAGPALLDELPEAVKAESNLVKVLSSSAASLVRYE 237

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY----GIGAMRVVAAV------- 328
             I  G  +Y     S            +      G Y     +     ++ +       
Sbjct: 238 PLIVRGLAYYT----STVFEVFDTSPQNRRALFGGGRYSNLASMFTKEQISGIGFGMGDV 293

Query: 329 -IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMG 385
            +    D  G+  P   +   +++I +    +   D    +   L K G       +   
Sbjct: 294 TLMDFLDTHGLT-PQPRSEVDVTVIPVT---EELADPARDVATALRKAGLRTSTPLELR- 348

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ++G +   AD  G    VIVG +  +  +V ++   T  ++ 
Sbjct: 349 -KLGKELTRADKAGAIAVVIVGEEDWAAGRVTVRSLATREQQQ 390


>gi|262341206|ref|YP_003284061.1| serine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272543|gb|ACY40451.1| serine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 431

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 75/223 (33%), Gaps = 12/223 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++  G K   ++     ++  +    E S+P L + +    +G+     +  + 
Sbjct: 171 GPGFSVYMEKGAKLQRSLIRYFLDKNIQALYKEYSLPYLINKESGYATGQIP-DKENQMY 229

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
             ++++  +   PT E  + + +R  I +Y +LP         FR E         G+ R
Sbjct: 230 FIEKDN--LYLIPTGEVPIMNCYRDKIFTYADLPVKATTYTSCFRREAGSYGSKVRGLNR 287

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LS 207
             +F   +      T + S  S  +M +    I   L L    +R     +G        
Sbjct: 288 LHQFEKVEIIQI-TTQDSSYFSLEEMILHVKNILKSLDLPFRLIRLNGPDLGFSSAITYD 346

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            E   +A     +V    + +DF     N  +  I        
Sbjct: 347 FEVYSIAQKKWLEVSSISNCLDFQSNRLNLRYKTITGNIKSCH 389


>gi|242239683|ref|YP_002987864.1| seryl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242131740|gb|ACS86042.1| seryl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 431

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 16/209 (7%)

Query: 37  KGIYSWLPLGQKAL--DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G    +  GQ A     +   +        G  E  VP L +      +G+   + +++
Sbjct: 159 TGSRFSVMKGQVARLHRALAQFMLNLHTAEHGYEEAYVPYLVNHATLYGTGQLPKFKEDL 218

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RP 145
                  ++A        PT E  +T++ R  I    +LP         FR E     R 
Sbjct: 219 FHTRPLEEEAETSSYALIPTAEVPLTNLVRDEILDEESLPIKLTAHTPCFRSEAGSYGRD 278

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG-- 203
             G++R  +F   +     + PE S  +  ++     ++   L L    +   +G +G  
Sbjct: 279 MRGLIRVHQFDKVEMVQI-VRPEDSMQALEELTGHAEKVLQLLQLPYRKVLLCTGDMGFG 337

Query: 204 --GDLSHEFIVLADTGETQVFCSKDFMDF 230
                  E  + A     ++    +  DF
Sbjct: 338 SCKTYDLEVWLPAQNTYREISSCSNMGDF 366


>gi|229012525|ref|ZP_04169699.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides DSM 2048]
 gi|228748685|gb|EEL98536.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides DSM 2048]
          Length = 431

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 139/442 (31%), Gaps = 67/442 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
           KG   +LP  Q   + +     +   R G   +  PTL   DL   + G  D   KE+  
Sbjct: 8   KGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYDLMSYKYGGGDEILKEIYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +   +      LPF  Y+I   FRD         R REF
Sbjct: 68  LKDQGKRDLALRYDLTIPFAKVVAMNPNIR--LPFKRYEIGKVFRD---GPIKQGRFREF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---------AESGPIGGDL 206
           +  D     +  E        M +++  +F  L L+               +S  I  +L
Sbjct: 123 IQCDVDIVGV--ESVMAEAELMSMAF-ELFRTLNLEVTIQYNNRKLLNGILQSINIPTEL 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + I+  D  E ++       D        +  D I    +              +N  
Sbjct: 180 TSDVILSLDKIE-KIGIDGVRKDVLDRGITVEMADTICNTVLSCLKLPIADFKDTFNNTL 238

Query: 267 LFDS----LPENKRVSARGIEVGHIF----------YFGTKYSLPMSATFKGA------- 305
           + D         + + A GI    IF          Y GT Y + +      +       
Sbjct: 239 VADGVEELQQLQQYLLALGINENTIFNPFLARGLTMYTGTVYEIFLKDGTITSSIGSGGR 298

Query: 306 ----------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                     D  ++     S+G+         I ++   K  I     +   + +I + 
Sbjct: 299 YDNIIGAFRGDNMNYPTVGISFGLDV-------IYTALSQKETI----SSTADLFIIPLG 347

Query: 356 AHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              Q     C +I  +L       V  +  G ++      A+    P  +I+G + +S  
Sbjct: 348 TELQ-----CLQIAQQLRSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTE 402

Query: 415 KVEIKHRLTGIREDMSLEEVIN 436
            V +++   G    + L  + N
Sbjct: 403 TVVLRNMKEGTEVKIPLSSLEN 424


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.147    0.418 

Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,848,906,855
Number of Sequences: 14124377
Number of extensions: 436368933
Number of successful extensions: 1068215
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 13194
Number of HSP's successfully gapped in prelim test: 7346
Number of HSP's that attempted gapping in prelim test: 1000156
Number of HSP's gapped (non-prelim): 35118
length of query: 449
length of database: 4,842,793,630
effective HSP length: 142
effective length of query: 307
effective length of database: 2,837,132,096
effective search space: 870999553472
effective search space used: 870999553472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 83 (36.4 bits)